##gff-version 3 ##sequence-region scaffold_2074 1 2001 scaffold_2074 . repeat_region 742 822 . ? . description=trf scaffold_2074 . repeat_region 1799 1882 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2071 1 2002 scaffold_2071 . biological_region 256 261 0.999 + . logic_name=eponine scaffold_2071 . repeat_region 1018 1055 . ? . description=trf scaffold_2071 . repeat_region 1318 1325 . ? . description=dust scaffold_2071 . repeat_region 1387 1800 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2072 1 2002 scaffold_2072 . repeat_region 1 2002 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_2073 1 2002 scaffold_2073 . repeat_region 458 481 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2070 1 2003 scaffold_2070 . repeat_region 213 265 . ? . description=trf scaffold_2070 . repeat_region 1426 1433 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2069 1 2005 ##gff-version 3 ##sequence-region scaffold_2390 1 2013 scaffold_2390 . repeat_region 1 2013 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2067 1 2017 ##gff-version 3 ##sequence-region scaffold_2068 1 2017 scaffold_2068 . biological_region 206 209 0.999 - . logic_name=eponine scaffold_2068 . biological_region 432 433 0.999 - . logic_name=eponine scaffold_2068 . biological_region 773 773 0.999 + . logic_name=eponine scaffold_2068 . repeat_region 851 860 . ? . description=dust scaffold_2068 . biological_region 870 876 0.999 + . logic_name=eponine scaffold_2068 ensembl protein_coding_gene 16 714 . + . ID=Physo145647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20680001;logic_name=jgi_physo1_1 scaffold_2068 ensembl transcript 16 714 . + . ID=Physo145647;Parent=Physo145647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2068 . CDS 16 714 . + 0 ID=Physo145647;Parent=Physo145647;rank=1 scaffold_2068 . exon 16 714 . + . ID=Physo145647.1;Parent=Physo145647;constitutive=1;rank=1 scaffold_2068 ensembl protein_coding_gene 1043 2008 . + . ID=Physo145648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20680002;logic_name=jgi_physo1_1 scaffold_2068 ensembl transcript 1043 2008 . + . ID=Physo145648;Parent=Physo145648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2068 . CDS 1043 2008 . + 0 ID=Physo145648;Parent=Physo145648;rank=1 scaffold_2068 . exon 1043 2008 . + . ID=Physo145648.1;Parent=Physo145648;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2066 1 2021 scaffold_2066 . repeat_region 20 885 . + . description=GypsyPi-1c_I-int scaffold_2066 . repeat_region 1069 1316 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2064 1 2023 scaffold_2064 . biological_region 242 246 0.999 + . logic_name=eponine scaffold_2064 . repeat_region 1269 1288 . ? . description=dust scaffold_2064 . repeat_region 1269 1288 . ? . description=trf scaffold_2064 . repeat_region 1411 2018 . - . description=GypsyPi-1c_I-int scaffold_2064 . biological_region 1558 1559 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2065 1 2023 scaffold_2065 . biological_region 857 860 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2063 1 2043 scaffold_2063 . biological_region 208 209 0.999 + . logic_name=eponine scaffold_2063 . repeat_region 1343 1369 . ? . description=trf scaffold_2063 . biological_region 1775 1778 0.999 + . logic_name=eponine scaffold_2063 ensembl protein_coding_gene 954 2018 . + . ID=Physo145646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20630001;logic_name=jgi_physo1_1 scaffold_2063 ensembl transcript 954 2018 . + . ID=Physo145646;Parent=Physo145646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2063 . CDS 954 2018 . + 0 ID=Physo145646;Parent=Physo145646;rank=1 scaffold_2063 . exon 954 2018 . + . ID=Physo145646.1;Parent=Physo145646;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2062 1 2044 scaffold_2062 . repeat_region 780 821 . ? . description=trf scaffold_2062 . repeat_region 1128 1191 . ? . description=dust scaffold_2062 . repeat_region 1132 1192 . ? . description=trf scaffold_2062 . repeat_region 1133 1191 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2061 1 2047 ##gff-version 3 ##sequence-region scaffold_1649 1 2049 scaffold_1649 ensembl protein_coding_gene 1 504 . + . ID=Physo145548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16490001;logic_name=jgi_physo1_1 scaffold_1649 ensembl transcript 1 504 . + . ID=Physo145548;Parent=Physo145548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1649 . CDS 1 504 . + 0 ID=Physo145548;Parent=Physo145548;rank=1 scaffold_1649 . exon 1 504 . + . ID=Physo145548.1;Parent=Physo145548;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2059 1 2049 scaffold_2059 . biological_region 992 999 0.999 + . logic_name=eponine scaffold_2059 . biological_region 1022 1026 0.999 - . logic_name=eponine scaffold_2059 . biological_region 1055 1063 0.999 - . logic_name=eponine scaffold_2059 . repeat_region 1059 1137 . ? . description=dust scaffold_2059 . repeat_region 1065 1088 . ? . description=trf scaffold_2059 . biological_region 1143 1144 0.999 - . logic_name=eponine scaffold_2059 . biological_region 1499 1502 0.999 - . logic_name=eponine scaffold_2059 ensembl protein_coding_gene 1 2049 . - . ID=Physo145645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20590001;logic_name=jgi_physo1_1 scaffold_2059 ensembl transcript 1 2049 . - . ID=Physo145645;Parent=Physo145645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2059 . exon 1 254 . - . ID=Physo145645.4;Parent=Physo145645;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_2059 . CDS 3 254 . - 0 ID=Physo145645;Parent=Physo145645;rank=4 scaffold_2059 . CDS 330 1118 . - 0 ID=Physo145645;Parent=Physo145645;rank=3 scaffold_2059 . exon 330 1118 . - . ID=Physo145645.3;Parent=Physo145645;constitutive=1;rank=3 scaffold_2059 . CDS 1177 1195 . - 0 ID=Physo145645;Parent=Physo145645;rank=2 scaffold_2059 . exon 1177 1195 . - . ID=Physo145645.2;Parent=Physo145645;constitutive=1;ensembl_phase=2;rank=2 scaffold_2059 . CDS 1379 1950 . - 0 ID=Physo145645;Parent=Physo145645;rank=1 scaffold_2059 . exon 1379 2049 . - . ID=Physo145645.1;Parent=Physo145645;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2060 1 2049 scaffold_2060 . biological_region 1063 1064 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2058 1 2053 scaffold_2058 . repeat_region 538 835 . - . description=Polinton-1_PI scaffold_2058 . repeat_region 954 1032 . - . description=Polinton-1_PI scaffold_2058 . biological_region 1775 1775 0.999 - . logic_name=eponine scaffold_2058 ensembl protein_coding_gene 21 708 . - . ID=Physo145644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20580001;logic_name=jgi_physo1_1 scaffold_2058 ensembl transcript 21 708 . - . ID=Physo145644;Parent=Physo145644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2058 . exon 21 456 . - . ID=Physo145644.2;Parent=Physo145644;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_2058 . CDS 22 456 . - 0 ID=Physo145644;Parent=Physo145644;rank=2 scaffold_2058 . CDS 490 708 . - 0 ID=Physo145644;Parent=Physo145644;rank=1 scaffold_2058 . exon 490 708 . - . ID=Physo145644.1;Parent=Physo145644;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2057 1 2059 ##gff-version 3 ##sequence-region scaffold_2054 1 2062 scaffold_2054 . repeat_region 761 769 . ? . description=dust scaffold_2054 . biological_region 1279 1283 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2056 1 2062 scaffold_2056 . repeat_region 641 661 . ? . description=dust scaffold_2056 . repeat_region 641 661 . ? . description=trf scaffold_2056 . repeat_region 1160 1168 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2053 1 2065 scaffold_2053 . repeat_region 1 1037 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2052 1 2072 scaffold_2052 . repeat_region 1381 1436 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2050 1 2075 scaffold_2050 . repeat_region 540 886 . - . description=GypsyPi-1c_I-int scaffold_2050 ensembl protein_coding_gene 491 745 . - . ID=Physo127011;biotype=protein_coding;external_name=estExt_Genewise1.C_20500002;logic_name=jgi_physo1_1 scaffold_2050 ensembl transcript 491 745 . - . ID=Physo127011;Parent=Physo127011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2050 . CDS 491 727 . - 0 ID=Physo127011;Parent=Physo127011;rank=1 scaffold_2050 . exon 491 745 . - . ID=Physo127011.1;Parent=Physo127011;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2051 1 2078 scaffold_2051 . repeat_region 314 338 . ? . description=dust scaffold_2051 . repeat_region 1989 2001 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2049 1 2082 scaffold_2049 . biological_region 478 481 0.999 + . logic_name=eponine scaffold_2049 . biological_region 715 720 0.999 - . logic_name=eponine scaffold_2049 . biological_region 803 806 0.999 - . logic_name=eponine scaffold_2049 . biological_region 1977 1977 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2048 1 2084 scaffold_2048 . repeat_region 180 205 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2047 1 2087 scaffold_2047 ensembl protein_coding_gene 1 1941 . - . ID=Physo145643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20470001;logic_name=jgi_physo1_1 scaffold_2047 ensembl transcript 1 1941 . - . ID=Physo145643;Parent=Physo145643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2047 . CDS 1 311 . - 0 ID=Physo145643;Parent=Physo145643;rank=4 scaffold_2047 . exon 1 311 . - . ID=Physo145643.4;Parent=Physo145643;constitutive=1;ensembl_phase=1;rank=4 scaffold_2047 . CDS 519 673 . - 0 ID=Physo145643;Parent=Physo145643;rank=3 scaffold_2047 . exon 519 673 . - . ID=Physo145643.3;Parent=Physo145643;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2047 . CDS 795 1125 . - 0 ID=Physo145643;Parent=Physo145643;rank=2 scaffold_2047 . exon 795 1125 . - . ID=Physo145643.2;Parent=Physo145643;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2047 . CDS 1209 1941 . - 0 ID=Physo145643;Parent=Physo145643;rank=1 scaffold_2047 . exon 1209 1941 . - . ID=Physo145643.1;Parent=Physo145643;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2045 1 2088 scaffold_2045 . biological_region 700 706 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2046 1 2088 scaffold_2046 . biological_region 50 53 0.999 - . logic_name=eponine scaffold_2046 . repeat_region 1993 2086 . + . description=(CGA)n scaffold_2046 . repeat_region 2017 2080 . ? . description=dust scaffold_2046 . repeat_region 2035 2086 . ? . description=trf scaffold_2046 . repeat_region 2038 2082 . ? . description=trf scaffold_2046 . repeat_region 2041 2086 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2041 1 2092 scaffold_2041 . repeat_region 1 741 . + . description=Sola3-1_PS scaffold_2041 . repeat_region 741 783 . - . description=Sola3-1_PS scaffold_2041 . repeat_region 780 2092 . + . description=Sola3-1_PS ##gff-version 3 ##sequence-region scaffold_2044 1 2092 scaffold_2044 . repeat_region 1 525 . - . description=GypsyPi-1c_I-int scaffold_2044 . biological_region 870 873 0.999 - . logic_name=eponine scaffold_2044 . biological_region 1123 1126 0.999 - . logic_name=eponine scaffold_2044 . repeat_region 1196 1233 . ? . description=trf scaffold_2044 . biological_region 1210 1211 0.999 - . logic_name=eponine scaffold_2044 . biological_region 1569 1572 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2042 1 2093 scaffold_2042 . biological_region 1196 1199 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2043 1 2095 scaffold_2043 . repeat_region 1 1107 . + . description=GypsyPi-1c_I-int scaffold_2043 . repeat_region 1377 1657 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_2040 1 2103 scaffold_2040 . biological_region 45 46 0.999 + . logic_name=eponine scaffold_2040 . biological_region 361 362 0.999 - . logic_name=eponine scaffold_2040 . biological_region 529 533 0.999 + . logic_name=eponine scaffold_2040 . biological_region 576 579 0.999 + . logic_name=eponine scaffold_2040 . biological_region 602 606 0.999 - . logic_name=eponine scaffold_2040 . biological_region 738 738 0.999 - . logic_name=eponine scaffold_2040 . biological_region 791 795 0.999 + . logic_name=eponine scaffold_2040 . biological_region 829 831 0.999 - . logic_name=eponine scaffold_2040 . biological_region 847 851 0.999 - . logic_name=eponine scaffold_2040 . biological_region 903 904 0.999 + . logic_name=eponine scaffold_2040 . biological_region 979 981 0.999 - . logic_name=eponine scaffold_2040 . biological_region 1058 1063 0.999 + . logic_name=eponine scaffold_2040 . biological_region 1165 1170 0.999 - . logic_name=eponine scaffold_2040 . biological_region 1178 1185 0.999 + . logic_name=eponine scaffold_2040 . biological_region 1194 1195 0.999 + . logic_name=eponine scaffold_2040 . biological_region 1220 1221 0.999 - . logic_name=eponine scaffold_2040 . biological_region 1315 1317 0.999 - . logic_name=eponine scaffold_2040 . biological_region 1491 1492 0.999 + . logic_name=eponine scaffold_2040 . biological_region 1534 1535 0.999 - . logic_name=eponine scaffold_2040 . biological_region 1655 1657 0.999 - . logic_name=eponine scaffold_2040 . biological_region 1706 1706 0.999 - . logic_name=eponine scaffold_2040 . biological_region 1807 1812 0.999 + . logic_name=eponine scaffold_2040 . biological_region 1870 1876 0.999 + . logic_name=eponine scaffold_2040 . biological_region 1918 1923 0.999 - . logic_name=eponine scaffold_2040 . biological_region 1931 1943 0.999 + . logic_name=eponine scaffold_2040 . repeat_region 1935 2013 . ? . description=trf scaffold_2040 . biological_region 1952 1953 0.999 - . logic_name=eponine scaffold_2040 . repeat_region 1958 2031 . ? . description=trf scaffold_2040 . biological_region 1971 1973 0.999 - . logic_name=eponine scaffold_2040 . biological_region 1989 1993 0.999 - . logic_name=eponine scaffold_2040 . biological_region 2031 2034 0.999 - . logic_name=eponine scaffold_2040 . repeat_region 2066 2103 . ? . description=trf scaffold_2040 . biological_region 2075 2080 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2039 1 2106 scaffold_2039 . repeat_region 187 381 . ? . description=trf scaffold_2039 . repeat_region 223 267 . ? . description=trf scaffold_2039 . repeat_region 232 285 . ? . description=trf scaffold_2039 . repeat_region 307 370 . ? . description=trf scaffold_2039 . repeat_region 1671 1697 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2037 1 2111 scaffold_2037 . biological_region 315 317 0.999 - . logic_name=eponine scaffold_2037 . biological_region 718 718 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2038 1 2111 scaffold_2038 . repeat_region 2 83 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2035 1 2116 scaffold_2035 . biological_region 802 803 0.999 + . logic_name=eponine scaffold_2035 . biological_region 1299 1299 0.999 + . logic_name=eponine scaffold_2035 . biological_region 2041 2041 0.999 - . logic_name=eponine scaffold_2035 ensembl protein_coding_gene 217 2006 . + . ID=Physo145642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20350001;logic_name=jgi_physo1_1 scaffold_2035 ensembl transcript 217 2006 . + . ID=Physo145642;Parent=Physo145642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2035 . CDS 217 534 . + 0 ID=Physo145642;Parent=Physo145642;rank=1 scaffold_2035 . exon 217 534 . + . ID=Physo145642.1;Parent=Physo145642;constitutive=1;rank=1 scaffold_2035 . CDS 576 2006 . + 0 ID=Physo145642;Parent=Physo145642;rank=2 scaffold_2035 . exon 576 2006 . + . ID=Physo145642.2;Parent=Physo145642;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2036 1 2117 scaffold_2036 . biological_region 667 668 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2034 1 2119 scaffold_2034 . biological_region 21 24 0.999 - . logic_name=eponine scaffold_2034 . biological_region 1922 1925 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1205 1 2120 scaffold_1205 . repeat_region 962 1011 . ? . description=dust scaffold_1205 . repeat_region 1648 1655 . ? . description=dust scaffold_1205 . repeat_region 1920 1997 . ? . description=dust scaffold_1205 . repeat_region 1920 1997 . ? . description=trf scaffold_1205 . repeat_region 1920 1997 . + . description=(TC)n scaffold_1205 ensembl protein_coding_gene 1614 1850 . - . ID=Physo126539;biotype=protein_coding;external_name=estExt_Genewise1.C_12050001;logic_name=jgi_physo1_1 scaffold_1205 ensembl transcript 1614 1850 . - . ID=Physo126539;Parent=Physo126539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1205 . CDS 1614 1787 . - 0 ID=Physo126539;Parent=Physo126539;rank=1 scaffold_1205 . exon 1614 1850 . - . ID=Physo126539.1;Parent=Physo126539;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2032 1 2120 scaffold_2032 . repeat_region 655 666 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2033 1 2120 scaffold_2033 . repeat_region 17 1647 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_2031 1 2131 scaffold_2031 . repeat_region 40 77 . ? . description=trf scaffold_2031 . repeat_region 340 352 . ? . description=dust scaffold_2031 . biological_region 658 662 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2029 1 2132 scaffold_2029 . biological_region 258 262 0.999 + . logic_name=eponine scaffold_2029 . repeat_region 952 966 . ? . description=dust scaffold_2029 ensembl protein_coding_gene 59 819 . + . ID=Physo145640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20290001;logic_name=jgi_physo1_1 scaffold_2029 ensembl transcript 59 819 . + . ID=Physo145640;Parent=Physo145640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2029 . CDS 59 666 . + 0 ID=Physo145640;Parent=Physo145640;rank=1 scaffold_2029 . exon 59 666 . + . ID=Physo145640.1;Parent=Physo145640;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2029 . CDS 699 819 . + 0 ID=Physo145640;Parent=Physo145640;rank=2 scaffold_2029 . exon 699 819 . + . ID=Physo145640.2;Parent=Physo145640;constitutive=1;ensembl_phase=2;rank=2 scaffold_2029 ensembl protein_coding_gene 1004 2132 . - . ID=Physo145641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20290002;logic_name=jgi_physo1_1 scaffold_2029 ensembl transcript 1004 2132 . - . ID=Physo145641;Parent=Physo145641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2029 . CDS 1004 1984 . - 0 ID=Physo145641;Parent=Physo145641;rank=1 scaffold_2029 . exon 1004 2132 . - . ID=Physo145641.1;Parent=Physo145641;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2025 1 2138 scaffold_2025 . biological_region 1379 1379 0.999 + . logic_name=eponine scaffold_2025 ensembl protein_coding_gene 514 1816 . + . ID=Physo145638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20250001;logic_name=jgi_physo1_1 scaffold_2025 ensembl transcript 514 1816 . + . ID=Physo145638;Parent=Physo145638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2025 . CDS 514 1632 . + 0 ID=Physo145638;Parent=Physo145638;rank=1 scaffold_2025 . exon 514 1632 . + . ID=Physo145638.1;Parent=Physo145638;constitutive=1;rank=1 scaffold_2025 . CDS 1814 1816 . + 0 ID=Physo145638;Parent=Physo145638;rank=2 scaffold_2025 . exon 1814 1816 . + . ID=Physo145638.2;Parent=Physo145638;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2030 1 2138 ##gff-version 3 ##sequence-region scaffold_2028 1 2139 scaffold_2028 . repeat_region 1461 1511 . ? . description=trf scaffold_2028 . repeat_region 1461 1513 . ? . description=trf scaffold_2028 . repeat_region 1574 1611 . ? . description=trf scaffold_2028 . biological_region 1829 1831 0.999 - . logic_name=eponine scaffold_2028 ensembl protein_coding_gene 1672 2139 . - . ID=Physo109762;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20280001;logic_name=jgi_physo1_1 scaffold_2028 ensembl transcript 1672 2139 . - . ID=Physo109762;Parent=Physo109762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2028 . CDS 1672 2130 . - 0 ID=Physo109762;Parent=Physo109762;rank=1 scaffold_2028 . exon 1672 2139 . - . ID=Physo109762.1;Parent=Physo109762;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2020 1 2144 ##gff-version 3 ##sequence-region scaffold_2026 1 2144 scaffold_2026 . repeat_region 5 2144 . - . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_2027 1 2144 scaffold_2027 . repeat_region 394 604 . ? . description=trf scaffold_2027 . repeat_region 396 613 . ? . description=trf scaffold_2027 . repeat_region 1491 1501 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2024 1 2147 scaffold_2024 . biological_region 2047 2049 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2023 1 2148 scaffold_2023 . biological_region 625 629 0.999 - . logic_name=eponine scaffold_2023 . biological_region 661 665 0.999 - . logic_name=eponine scaffold_2023 . biological_region 681 684 0.999 + . logic_name=eponine scaffold_2023 . biological_region 713 717 0.999 + . logic_name=eponine scaffold_2023 . biological_region 809 813 0.999 + . logic_name=eponine scaffold_2023 . biological_region 818 821 0.999 - . logic_name=eponine scaffold_2023 . biological_region 865 868 0.999 - . logic_name=eponine scaffold_2023 . biological_region 874 876 0.999 + . logic_name=eponine scaffold_2023 . biological_region 901 905 0.999 + . logic_name=eponine scaffold_2023 . biological_region 921 928 0.999 + . logic_name=eponine scaffold_2023 . biological_region 948 954 0.999 + . logic_name=eponine scaffold_2023 . biological_region 1094 1096 0.999 + . logic_name=eponine scaffold_2023 . biological_region 1412 1412 0.999 - . logic_name=eponine scaffold_2023 . biological_region 1470 1470 0.999 + . logic_name=eponine scaffold_2023 . biological_region 2001 2004 0.999 + . logic_name=eponine scaffold_2023 . biological_region 2066 2066 0.999 - . logic_name=eponine scaffold_2023 . biological_region 2074 2076 0.999 + . logic_name=eponine scaffold_2023 . biological_region 2106 2114 0.999 - . logic_name=eponine scaffold_2023 . biological_region 2125 2129 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2019 1 2154 scaffold_2019 . repeat_region 674 685 . ? . description=dust scaffold_2019 . biological_region 701 713 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2022 1 2156 scaffold_2022 . repeat_region 1779 1815 . ? . description=trf scaffold_2022 ensembl protein_coding_gene 1 1418 . + . ID=Physo145637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20220001;logic_name=jgi_physo1_1 scaffold_2022 ensembl transcript 1 1418 . + . ID=Physo145637;Parent=Physo145637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2022 . exon 1 1418 . + . ID=Physo145637.1;Parent=Physo145637;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2022 . CDS 260 1249 . + 0 ID=Physo145637;Parent=Physo145637;rank=1 ##gff-version 3 ##sequence-region scaffold_2018 1 2158 scaffold_2018 ensembl protein_coding_gene 20 1282 . + . ID=Physo109761;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20180001;logic_name=jgi_physo1_1 scaffold_2018 ensembl transcript 20 1282 . + . ID=Physo109761;Parent=Physo109761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2018 . CDS 20 1282 . + 0 ID=Physo109761;Parent=Physo109761;rank=1 scaffold_2018 . exon 20 1282 . + . ID=Physo109761.1;Parent=Physo109761;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2021 1 2161 ##gff-version 3 ##sequence-region scaffold_2017 1 2163 ##gff-version 3 ##sequence-region scaffold_2545 1 2164 scaffold_2545 . repeat_region 1 2164 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2016 1 2168 ##gff-version 3 ##sequence-region scaffold_2015 1 2171 scaffold_2015 . repeat_region 508 1111 . - . description=Gypsy-1-I_PI-int scaffold_2015 . repeat_region 1838 1957 . + . description=(ATCG)n scaffold_2015 . repeat_region 1841 1954 . ? . description=trf scaffold_2015 . biological_region 1968 1973 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2014 1 2174 scaffold_2014 ensembl protein_coding_gene 1540 2100 . - . ID=Physo126985;biotype=protein_coding;external_name=estExt_Genewise1.C_20140001;logic_name=jgi_physo1_1 scaffold_2014 ensembl transcript 1540 2100 . - . ID=Physo126985;Parent=Physo126985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2014 . CDS 1540 2064 . - 0 ID=Physo126985;Parent=Physo126985;rank=1 scaffold_2014 . exon 1540 2100 . - . ID=Physo126985.1;Parent=Physo126985;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2014 ensembl protein_coding_gene 361 1410 . + . ID=Physo145635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20140001;logic_name=jgi_physo1_1 scaffold_2014 ensembl transcript 361 1410 . + . ID=Physo145635;Parent=Physo145635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2014 . CDS 361 828 . + 0 ID=Physo145635;Parent=Physo145635;rank=1 scaffold_2014 . exon 361 828 . + . ID=Physo145635.1;Parent=Physo145635;constitutive=1;rank=1 scaffold_2014 . CDS 1000 1410 . + 0 ID=Physo145635;Parent=Physo145635;rank=2 scaffold_2014 . exon 1000 1410 . + . ID=Physo145635.2;Parent=Physo145635;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_2013 1 2181 scaffold_2013 . repeat_region 998 1006 . ? . description=dust scaffold_2013 . repeat_region 1403 1456 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2012 1 2191 scaffold_2012 . repeat_region 1349 1361 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2011 1 2193 scaffold_2011 . repeat_region 1743 1793 . ? . description=trf scaffold_2011 . repeat_region 1835 1865 . ? . description=trf scaffold_2011 . repeat_region 1870 1907 . ? . description=trf scaffold_2011 . biological_region 2125 2127 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2009 1 2194 ##gff-version 3 ##sequence-region scaffold_2010 1 2196 scaffold_2010 . biological_region 121 123 0.999 - . logic_name=eponine scaffold_2010 . biological_region 154 156 0.999 - . logic_name=eponine scaffold_2010 . biological_region 1272 1273 0.999 - . logic_name=eponine scaffold_2010 ensembl protein_coding_gene 1 720 . + . ID=Physo145634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20100001;logic_name=jgi_physo1_1 scaffold_2010 ensembl transcript 1 720 . + . ID=Physo145634;Parent=Physo145634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2010 . exon 1 350 . + . ID=Physo145634.1;Parent=Physo145634;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2010 . CDS 3 350 . + 0 ID=Physo145634;Parent=Physo145634;rank=1 scaffold_2010 . CDS 612 719 . + 0 ID=Physo145634;Parent=Physo145634;rank=2 scaffold_2010 . exon 612 720 . + . ID=Physo145634.2;Parent=Physo145634;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_2008 1 2197 scaffold_2008 . repeat_region 723 731 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_2007 1 2208 scaffold_2007 . repeat_region 1651 1658 . ? . description=dust scaffold_2007 ensembl protein_coding_gene 579 1622 . - . ID=Physo126983;biotype=protein_coding;external_name=estExt_Genewise1.C_20070001;logic_name=jgi_physo1_1 scaffold_2007 ensembl transcript 579 1622 . - . ID=Physo126983;Parent=Physo126983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2007 . CDS 579 608 . - 0 ID=Physo126983;Parent=Physo126983;rank=5 scaffold_2007 . exon 579 608 . - . ID=Physo126983.5;Parent=Physo126983;constitutive=1;rank=5 scaffold_2007 . CDS 680 922 . - 0 ID=Physo126983;Parent=Physo126983;rank=4 scaffold_2007 . exon 680 922 . - . ID=Physo126983.4;Parent=Physo126983;constitutive=1;rank=4 scaffold_2007 . CDS 997 1240 . - 0 ID=Physo126983;Parent=Physo126983;rank=3 scaffold_2007 . exon 997 1240 . - . ID=Physo126983.3;Parent=Physo126983;constitutive=1;ensembl_phase=2;rank=3 scaffold_2007 . CDS 1320 1379 . - 0 ID=Physo126983;Parent=Physo126983;rank=2 scaffold_2007 . exon 1320 1379 . - . ID=Physo126983.2;Parent=Physo126983;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2007 . CDS 1469 1569 . - 0 ID=Physo126983;Parent=Physo126983;rank=1 scaffold_2007 . exon 1469 1622 . - . ID=Physo126983.1;Parent=Physo126983;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2007 ensembl protein_coding_gene 1729 2129 . + . ID=Physo145633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20070002;logic_name=jgi_physo1_1 scaffold_2007 ensembl transcript 1729 2129 . + . ID=Physo145633;Parent=Physo145633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2007 . CDS 1729 1889 . + 0 ID=Physo145633;Parent=Physo145633;rank=1 scaffold_2007 . exon 1729 1889 . + . ID=Physo145633.1;Parent=Physo145633;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2007 . CDS 1958 2129 . + 0 ID=Physo145633;Parent=Physo145633;rank=2 scaffold_2007 . exon 1958 2129 . + . ID=Physo145633.2;Parent=Physo145633;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_2005 1 2212 ##gff-version 3 ##sequence-region scaffold_2006 1 2212 scaffold_2006 . repeat_region 733 793 . + . description=(CTCTG)n scaffold_2006 . repeat_region 739 794 . ? . description=dust scaffold_2006 . repeat_region 740 793 . ? . description=trf scaffold_2006 . repeat_region 741 782 . ? . description=trf scaffold_2006 . repeat_region 741 794 . ? . description=trf scaffold_2006 . repeat_region 1116 1135 . ? . description=trf scaffold_2006 . biological_region 1257 1259 0.999 + . logic_name=eponine scaffold_2006 . biological_region 1634 1639 0.999 + . logic_name=eponine scaffold_2006 . biological_region 1673 1679 0.999 + . logic_name=eponine scaffold_2006 . biological_region 1694 1699 0.999 + . logic_name=eponine scaffold_2006 . repeat_region 1847 1887 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2004 1 2216 scaffold_2004 . repeat_region 565 607 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2003 1 2219 ##gff-version 3 ##sequence-region scaffold_2002 1 2222 scaffold_2002 . biological_region 53 53 0.999 + . logic_name=eponine scaffold_2002 . repeat_region 350 426 . ? . description=trf scaffold_2002 . biological_region 417 419 0.999 + . logic_name=eponine scaffold_2002 . biological_region 479 480 0.999 + . logic_name=eponine scaffold_2002 . biological_region 508 510 0.999 + . logic_name=eponine scaffold_2002 . biological_region 512 518 0.999 - . logic_name=eponine scaffold_2002 . repeat_region 569 615 . ? . description=trf scaffold_2002 . biological_region 597 602 0.999 + . logic_name=eponine scaffold_2002 . biological_region 615 620 0.999 - . logic_name=eponine scaffold_2002 . biological_region 1155 1163 0.999 + . logic_name=eponine scaffold_2002 . biological_region 1176 1182 0.999 + . logic_name=eponine scaffold_2002 . repeat_region 1221 1250 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_2001 1 2223 scaffold_2001 . biological_region 1384 1384 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2000 1 2225 scaffold_2000 . repeat_region 215 519 . ? . description=trf scaffold_2000 . biological_region 223 227 0.999 + . logic_name=eponine scaffold_2000 . repeat_region 309 520 . ? . description=trf scaffold_2000 . biological_region 478 482 0.999 - . logic_name=eponine scaffold_2000 . biological_region 513 516 0.999 - . logic_name=eponine scaffold_2000 . biological_region 535 539 0.999 + . logic_name=eponine scaffold_2000 . biological_region 692 693 0.999 - . logic_name=eponine scaffold_2000 . repeat_region 1336 1366 . ? . description=dust scaffold_2000 . biological_region 1493 1498 0.999 - . logic_name=eponine scaffold_2000 . biological_region 1680 1680 0.999 - . logic_name=eponine scaffold_2000 . biological_region 1815 1819 0.999 + . logic_name=eponine scaffold_2000 . biological_region 1876 1884 0.999 + . logic_name=eponine scaffold_2000 . biological_region 1899 1900 0.999 + . logic_name=eponine scaffold_2000 . biological_region 2162 2169 0.999 - . logic_name=eponine scaffold_2000 ensembl protein_coding_gene 1 1370 . - . ID=Physo145631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20000001;logic_name=jgi_physo1_1 scaffold_2000 ensembl transcript 1 1370 . - . ID=Physo145631;Parent=Physo145631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2000 . exon 1 1370 . - . ID=Physo145631.1;Parent=Physo145631;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2000 . CDS 12 1283 . - 0 ID=Physo145631;Parent=Physo145631;rank=1 ##gff-version 3 ##sequence-region scaffold_1999 1 2233 scaffold_1999 . biological_region 205 209 0.999 + . logic_name=eponine scaffold_1999 . repeat_region 561 573 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1998 1 2236 scaffold_1998 . biological_region 153 157 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1997 1 2239 scaffold_1997 . repeat_region 605 629 . ? . description=trf scaffold_1997 . biological_region 1044 1044 0.999 + . logic_name=eponine scaffold_1997 ensembl protein_coding_gene 2009 2236 . + . ID=Physo126977;biotype=protein_coding;external_name=estExt_Genewise1.C_19970001;logic_name=jgi_physo1_1 scaffold_1997 ensembl transcript 2009 2236 . + . ID=Physo126977;Parent=Physo126977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1997 . exon 2009 2236 . + . ID=Physo126977.1;Parent=Physo126977;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1997 . CDS 2195 2236 . + 0 ID=Physo126977;Parent=Physo126977;rank=1 scaffold_1997 ensembl protein_coding_gene 611 1820 . - . ID=Physo145630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19970001;logic_name=jgi_physo1_1 scaffold_1997 ensembl transcript 611 1820 . - . ID=Physo145630;Parent=Physo145630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1997 . exon 611 1720 . - . ID=Physo145630.2;Parent=Physo145630;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1997 . CDS 759 1720 . - 0 ID=Physo145630;Parent=Physo145630;rank=2 scaffold_1997 . CDS 1754 1820 . - 0 ID=Physo145630;Parent=Physo145630;rank=1 scaffold_1997 . exon 1754 1820 . - . ID=Physo145630.1;Parent=Physo145630;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_223 1 2260 scaffold_223 . biological_region 603 603 0.999 + . logic_name=eponine scaffold_223 . biological_region 1112 1113 0.999 + . logic_name=eponine scaffold_223 . biological_region 1822 1823 0.999 + . logic_name=eponine scaffold_223 ensembl tRNA_gene 453 524 . - . ID=EPrPSOG00000000028;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_223 ensembl transcript 453 524 . - . ID=EPrPSOT00000000028;Parent=EPrPSOG00000000028;biotype=tRNA;logic_name=ncrna_eg scaffold_223 ensembl tRNA_gene 273 344 . - . ID=EPrPSOG00000000037;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_223 ensembl transcript 273 344 . - . ID=EPrPSOT00000000037;Parent=EPrPSOG00000000037;biotype=tRNA;logic_name=ncrna_eg scaffold_223 ensembl tRNA_gene 962 1033 . - . ID=EPrPSOG00000000114;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_223 ensembl transcript 962 1033 . - . ID=EPrPSOT00000000114;Parent=EPrPSOG00000000114;biotype=tRNA;logic_name=ncrna_eg scaffold_223 ensembl tRNA_gene 1492 1563 . - . ID=EPrPSOG00000000135;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_223 ensembl transcript 1492 1563 . - . ID=EPrPSOT00000000135;Parent=EPrPSOG00000000135;biotype=tRNA;logic_name=ncrna_eg scaffold_223 ensembl tRNA_gene 1672 1743 . - . ID=EPrPSOG00000000253;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_223 ensembl transcript 1672 1743 . - . ID=EPrPSOT00000000253;Parent=EPrPSOG00000000253;biotype=tRNA;logic_name=ncrna_eg scaffold_223 . exon 453 524 . - . ID=EPrPSOE00000000028;Parent=EPrPSOT00000000028;constitutive=1;rank=1 scaffold_223 . exon 273 344 . - . ID=EPrPSOE00000000037;Parent=EPrPSOT00000000037;constitutive=1;rank=1 scaffold_223 . exon 962 1033 . - . ID=EPrPSOE00000000114;Parent=EPrPSOT00000000114;constitutive=1;rank=1 scaffold_223 . exon 1492 1563 . - . ID=EPrPSOE00000000135;Parent=EPrPSOT00000000135;constitutive=1;rank=1 scaffold_223 . exon 1672 1743 . - . ID=EPrPSOE00000000253;Parent=EPrPSOT00000000253;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1995 1 2264 scaffold_1995 . repeat_region 2198 2211 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1994 1 2274 scaffold_1994 . biological_region 372 373 0.999 - . logic_name=eponine scaffold_1994 . biological_region 413 414 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1993 1 2280 scaffold_1993 . biological_region 908 911 0.999 - . logic_name=eponine scaffold_1993 . biological_region 1902 1903 0.999 - . logic_name=eponine scaffold_1993 ensembl protein_coding_gene 1178 2263 . - . ID=Physo145629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19930001;logic_name=jgi_physo1_1 scaffold_1993 ensembl transcript 1178 2263 . - . ID=Physo145629;Parent=Physo145629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1993 . exon 1178 1645 . - . ID=Physo145629.2;Parent=Physo145629;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1993 . CDS 1265 1645 . - 0 ID=Physo145629;Parent=Physo145629;rank=2 scaffold_1993 . CDS 1894 2247 . - 0 ID=Physo145629;Parent=Physo145629;rank=1 scaffold_1993 . exon 1894 2263 . - . ID=Physo145629.1;Parent=Physo145629;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1992 1 2285 scaffold_1992 . biological_region 988 989 0.999 + . logic_name=eponine scaffold_1992 . biological_region 995 998 0.999 + . logic_name=eponine scaffold_1992 . repeat_region 1416 1442 . ? . description=trf scaffold_1992 . biological_region 1421 1426 0.999 + . logic_name=eponine scaffold_1992 ensembl protein_coding_gene 1132 2142 . + . ID=Physo145628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19920001;logic_name=jgi_physo1_1 scaffold_1992 ensembl transcript 1132 2142 . + . ID=Physo145628;Parent=Physo145628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1992 . CDS 1132 2142 . + 0 ID=Physo145628;Parent=Physo145628;rank=1 scaffold_1992 . exon 1132 2142 . + . ID=Physo145628.1;Parent=Physo145628;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1991 1 2287 scaffold_1991 . biological_region 380 383 0.999 + . logic_name=eponine scaffold_1991 . biological_region 1615 1620 0.999 + . logic_name=eponine scaffold_1991 . biological_region 1832 1839 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1990 1 2290 scaffold_1990 . repeat_region 392 434 . ? . description=trf scaffold_1990 ensembl protein_coding_gene 1 672 . + . ID=Physo145626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19900001;logic_name=jgi_physo1_1 scaffold_1990 ensembl transcript 1 672 . + . ID=Physo145626;Parent=Physo145626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1990 . exon 1 359 . + . ID=Physo145626.1;Parent=Physo145626;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1990 . CDS 226 359 . + 0 ID=Physo145626;Parent=Physo145626;rank=1 scaffold_1990 . CDS 388 428 . + 0 ID=Physo145626;Parent=Physo145626;rank=2 scaffold_1990 . exon 388 428 . + . ID=Physo145626.2;Parent=Physo145626;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1990 . CDS 487 662 . + 0 ID=Physo145626;Parent=Physo145626;rank=3 scaffold_1990 . exon 487 672 . + . ID=Physo145626.3;Parent=Physo145626;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_1990 ensembl protein_coding_gene 1293 2029 . + . ID=Physo145627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19900002;logic_name=jgi_physo1_1 scaffold_1990 ensembl transcript 1293 2029 . + . ID=Physo145627;Parent=Physo145627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1990 . CDS 1293 1612 . + 0 ID=Physo145627;Parent=Physo145627;rank=1 scaffold_1990 . exon 1293 1612 . + . ID=Physo145627.1;Parent=Physo145627;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1990 . CDS 1654 2029 . + 0 ID=Physo145627;Parent=Physo145627;rank=2 scaffold_1990 . exon 1654 2029 . + . ID=Physo145627.2;Parent=Physo145627;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1989 1 2300 scaffold_1989 . repeat_region 400 425 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1988 1 2307 scaffold_1988 ensembl protein_coding_gene 9 1107 . - . ID=Physo145625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19880001;logic_name=jgi_physo1_1 scaffold_1988 ensembl transcript 9 1107 . - . ID=Physo145625;Parent=Physo145625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1988 . exon 9 1107 . - . ID=Physo145625.1;Parent=Physo145625;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1988 . CDS 10 1107 . - 0 ID=Physo145625;Parent=Physo145625;rank=1 ##gff-version 3 ##sequence-region scaffold_1987 1 2308 scaffold_1987 . repeat_region 1682 1689 . ? . description=dust scaffold_1987 ensembl protein_coding_gene 208 2181 . - . ID=Physo145624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19870001;logic_name=jgi_physo1_1 scaffold_1987 ensembl transcript 208 2181 . - . ID=Physo145624;Parent=Physo145624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1987 . CDS 208 346 . - 0 ID=Physo145624;Parent=Physo145624;rank=6 scaffold_1987 . exon 208 346 . - . ID=Physo145624.6;Parent=Physo145624;constitutive=1;ensembl_phase=2;rank=6 scaffold_1987 . CDS 528 760 . - 0 ID=Physo145624;Parent=Physo145624;rank=5 scaffold_1987 . exon 528 760 . - . ID=Physo145624.5;Parent=Physo145624;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1987 . CDS 783 1054 . - 0 ID=Physo145624;Parent=Physo145624;rank=4 scaffold_1987 . exon 783 1054 . - . ID=Physo145624.4;Parent=Physo145624;constitutive=1;ensembl_phase=1;rank=4 scaffold_1987 . CDS 1084 1433 . - 0 ID=Physo145624;Parent=Physo145624;rank=3 scaffold_1987 . exon 1084 1433 . - . ID=Physo145624.3;Parent=Physo145624;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1987 . CDS 1476 1615 . - 0 ID=Physo145624;Parent=Physo145624;rank=2 scaffold_1987 . exon 1476 1615 . - . ID=Physo145624.2;Parent=Physo145624;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1987 . CDS 1669 2028 . - 0 ID=Physo145624;Parent=Physo145624;rank=1 scaffold_1987 . exon 1669 2181 . - . ID=Physo145624.1;Parent=Physo145624;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1984 1 2312 scaffold_1984 . biological_region 356 362 0.999 + . logic_name=eponine scaffold_1984 . biological_region 555 556 0.999 + . logic_name=eponine scaffold_1984 . biological_region 1866 1867 0.999 + . logic_name=eponine scaffold_1984 ensembl protein_coding_gene 51 861 . - . ID=Physo145622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19840001;logic_name=jgi_physo1_1 scaffold_1984 ensembl transcript 51 861 . - . ID=Physo145622;Parent=Physo145622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1984 . exon 51 248 . - . ID=Physo145622.2;Parent=Physo145622;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1984 . CDS 52 248 . - 0 ID=Physo145622;Parent=Physo145622;rank=2 scaffold_1984 . CDS 326 836 . - 0 ID=Physo145622;Parent=Physo145622;rank=1 scaffold_1984 . exon 326 861 . - . ID=Physo145622.1;Parent=Physo145622;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1986 1 2313 scaffold_1986 . biological_region 1293 1297 0.999 - . logic_name=eponine scaffold_1986 . repeat_region 1635 1709 . ? . description=trf scaffold_1986 . biological_region 2293 2298 0.999 - . logic_name=eponine scaffold_1986 ensembl protein_coding_gene 910 2304 . - . ID=Physo145623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19860001;logic_name=jgi_physo1_1 scaffold_1986 ensembl transcript 910 2304 . - . ID=Physo145623;Parent=Physo145623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1986 . CDS 910 1524 . - 0 ID=Physo145623;Parent=Physo145623;rank=1 scaffold_1986 . exon 910 2304 . - . ID=Physo145623.1;Parent=Physo145623;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1985 1 2316 scaffold_1985 . repeat_region 1242 2288 . + . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_1983 1 2318 scaffold_1983 . repeat_region 962 970 . ? . description=dust scaffold_1983 . repeat_region 1098 1148 . ? . description=trf scaffold_1983 . biological_region 1281 1282 0.999 - . logic_name=eponine scaffold_1983 . biological_region 2240 2243 0.999 + . logic_name=eponine scaffold_1983 . biological_region 2301 2301 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1982 1 2325 scaffold_1982 . repeat_region 1505 1513 . ? . description=dust scaffold_1982 . biological_region 2291 2296 0.999 - . logic_name=eponine scaffold_1982 ensembl protein_coding_gene 106 914 . + . ID=Physo145621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19820001;logic_name=jgi_physo1_1 scaffold_1982 ensembl transcript 106 914 . + . ID=Physo145621;Parent=Physo145621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1982 . CDS 106 834 . + 0 ID=Physo145621;Parent=Physo145621;rank=1 scaffold_1982 . exon 106 914 . + . ID=Physo145621.1;Parent=Physo145621;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_2259 1 2333 scaffold_2259 . repeat_region 1 2333 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1981 1 2354 scaffold_1981 . biological_region 150 153 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1980 1 2356 scaffold_1980 . biological_region 493 500 0.999 + . logic_name=eponine scaffold_1980 . biological_region 522 527 0.999 - . logic_name=eponine scaffold_1980 . biological_region 524 528 0.999 + . logic_name=eponine scaffold_1980 . biological_region 632 636 0.999 - . logic_name=eponine scaffold_1980 . repeat_region 1815 1915 . ? . description=trf scaffold_1980 . repeat_region 1817 1911 . ? . description=trf scaffold_1980 . biological_region 1951 1953 0.999 - . logic_name=eponine scaffold_1980 . biological_region 2002 2006 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1979 1 2358 scaffold_1979 . biological_region 802 803 0.999 - . logic_name=eponine scaffold_1979 . repeat_region 1088 1182 . ? . description=trf scaffold_1979 . biological_region 1811 1817 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1978 1 2362 scaffold_1978 . repeat_region 200 207 . ? . description=dust scaffold_1978 . repeat_region 2143 2150 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1973 1 2364 scaffold_1973 . biological_region 235 238 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1977 1 2364 ##gff-version 3 ##sequence-region scaffold_1972 1 2365 scaffold_1972 . biological_region 138 140 0.999 + . logic_name=eponine scaffold_1972 . biological_region 2100 2104 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1974 1 2365 ##gff-version 3 ##sequence-region scaffold_1975 1 2365 scaffold_1975 . repeat_region 1 547 . - . description=GypsyPi-1c_I-int scaffold_1975 . biological_region 1078 1084 0.999 + . logic_name=eponine scaffold_1975 . biological_region 1145 1148 0.999 - . logic_name=eponine scaffold_1975 . biological_region 1215 1217 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1976 1 2366 scaffold_1976 . biological_region 1321 1327 0.999 - . logic_name=eponine scaffold_1976 . biological_region 1816 1818 0.999 + . logic_name=eponine scaffold_1976 ensembl protein_coding_gene 658 2088 . + . ID=Physo145620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19760001;logic_name=jgi_physo1_1 scaffold_1976 ensembl transcript 658 2088 . + . ID=Physo145620;Parent=Physo145620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1976 . CDS 658 660 . + 0 ID=Physo145620;Parent=Physo145620;rank=1 scaffold_1976 . exon 658 660 . + . ID=Physo145620.1;Parent=Physo145620;constitutive=1;rank=1 scaffold_1976 . CDS 1319 1494 . + 0 ID=Physo145620;Parent=Physo145620;rank=2 scaffold_1976 . exon 1319 1494 . + . ID=Physo145620.2;Parent=Physo145620;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1976 . CDS 1629 1751 . + 0 ID=Physo145620;Parent=Physo145620;rank=3 scaffold_1976 . exon 1629 1751 . + . ID=Physo145620.3;Parent=Physo145620;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1976 . CDS 1821 2049 . + 0 ID=Physo145620;Parent=Physo145620;rank=4 scaffold_1976 . exon 1821 2088 . + . ID=Physo145620.4;Parent=Physo145620;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1971 1 2374 scaffold_1971 . biological_region 514 518 0.999 + . logic_name=eponine scaffold_1971 . biological_region 900 904 0.999 - . logic_name=eponine scaffold_1971 . repeat_region 1898 1938 . ? . description=trf scaffold_1971 ensembl protein_coding_gene 120 1618 . + . ID=Physo109760;biotype=protein_coding;description=Enolase [Source:UniProtKB/TrEMBL%3BAcc:A7XGY9];external_name=ENL;logic_name=jgi_physo1_1 scaffold_1971 ensembl transcript 120 1618 . + . ID=Physo109760;Parent=Physo109760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1971 . exon 120 1618 . + . ID=Physo109760.1;Parent=Physo109760;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1971 . CDS 165 1529 . + 0 ID=Physo109760;Parent=Physo109760;rank=1 ##gff-version 3 ##sequence-region scaffold_1970 1 2375 scaffold_1970 . repeat_region 925 955 . ? . description=trf scaffold_1970 . biological_region 2206 2210 0.999 + . logic_name=eponine scaffold_1970 . biological_region 2267 2272 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1969 1 2378 scaffold_1969 . repeat_region 37 117 . + . description=GypsyPi-1c_LTR scaffold_1969 . repeat_region 1375 1382 . ? . description=dust scaffold_1969 . repeat_region 2298 2307 . ? . description=dust scaffold_1969 ensembl protein_coding_gene 173 483 . + . ID=Physo145618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19690001;logic_name=jgi_physo1_1 scaffold_1969 ensembl transcript 173 483 . + . ID=Physo145618;Parent=Physo145618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1969 . exon 173 483 . + . ID=Physo145618.1;Parent=Physo145618;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1969 . CDS 175 483 . + 0 ID=Physo145618;Parent=Physo145618;rank=1 ##gff-version 3 ##sequence-region scaffold_1967 1 2385 scaffold_1967 . repeat_region 1335 1343 . ? . description=dust scaffold_1967 ensembl protein_coding_gene 1731 2375 . + . ID=Physo145617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19670001;logic_name=jgi_physo1_1 scaffold_1967 ensembl transcript 1731 2375 . + . ID=Physo145617;Parent=Physo145617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1967 . CDS 1731 2375 . + 0 ID=Physo145617;Parent=Physo145617;rank=1 scaffold_1967 . exon 1731 2375 . + . ID=Physo145617.1;Parent=Physo145617;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1968 1 2385 ##gff-version 3 ##sequence-region scaffold_1966 1 2389 scaffold_1966 . biological_region 125 131 0.999 + . logic_name=eponine scaffold_1966 . biological_region 656 660 0.999 + . logic_name=eponine scaffold_1966 . biological_region 1042 1046 0.999 - . logic_name=eponine scaffold_1966 . repeat_region 2040 2080 . ? . description=trf scaffold_1966 ensembl protein_coding_gene 254 1760 . + . ID=Physo109759;biotype=protein_coding;description=Enolase [Source:UniProtKB/TrEMBL%3BAcc:A7XGY9];external_name=ENL;logic_name=jgi_physo1_1 scaffold_1966 ensembl transcript 254 1760 . + . ID=Physo109759;Parent=Physo109759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1966 . exon 254 1760 . + . ID=Physo109759.1;Parent=Physo109759;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1966 . CDS 307 1671 . + 0 ID=Physo109759;Parent=Physo109759;rank=1 ##gff-version 3 ##sequence-region scaffold_1965 1 2390 scaffold_1965 . repeat_region 215 245 . ? . description=dust scaffold_1965 . repeat_region 349 372 . ? . description=dust scaffold_1965 . biological_region 963 964 0.999 + . logic_name=eponine scaffold_1965 . repeat_region 1461 1491 . ? . description=dust scaffold_1965 . repeat_region 1595 1618 . ? . description=dust scaffold_1965 ensembl protein_coding_gene 839 1327 . + . ID=Physo145615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19650001;logic_name=jgi_physo1_1 scaffold_1965 ensembl transcript 839 1327 . + . ID=Physo145615;Parent=Physo145615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1965 . CDS 839 1327 . + 0 ID=Physo145615;Parent=Physo145615;rank=1 scaffold_1965 . exon 839 1327 . + . ID=Physo145615.1;Parent=Physo145615;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1963 1 2393 scaffold_1963 . repeat_region 670 699 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1964 1 2393 scaffold_1964 . repeat_region 2294 2302 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1962 1 2398 scaffold_1962 . repeat_region 605 653 . ? . description=trf scaffold_1962 . biological_region 889 892 0.999 + . logic_name=eponine scaffold_1962 . biological_region 904 907 0.999 - . logic_name=eponine scaffold_1962 . repeat_region 1298 1380 . ? . description=trf scaffold_1962 . repeat_region 1304 1380 . ? . description=trf scaffold_1962 . biological_region 1370 1373 0.999 + . logic_name=eponine scaffold_1962 . biological_region 1374 1377 0.999 - . logic_name=eponine scaffold_1962 . biological_region 1434 1434 0.999 + . logic_name=eponine scaffold_1962 . biological_region 1459 1464 0.999 + . logic_name=eponine scaffold_1962 . biological_region 1467 1472 0.999 - . logic_name=eponine scaffold_1962 . repeat_region 1523 1569 . ? . description=trf scaffold_1962 . biological_region 1551 1556 0.999 + . logic_name=eponine scaffold_1962 . biological_region 1569 1574 0.999 - . logic_name=eponine scaffold_1962 . biological_region 1993 1998 0.999 - . logic_name=eponine scaffold_1962 . biological_region 2073 2073 0.999 + . logic_name=eponine scaffold_1962 . biological_region 2351 2356 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1961 1 2405 scaffold_1961 . repeat_region 1173 1197 . ? . description=trf scaffold_1961 ensembl protein_coding_gene 1017 2093 . + . ID=Physo145614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19610001;logic_name=jgi_physo1_1 scaffold_1961 ensembl transcript 1017 2093 . + . ID=Physo145614;Parent=Physo145614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1961 . CDS 1017 2093 . + 0 ID=Physo145614;Parent=Physo145614;rank=1 scaffold_1961 . exon 1017 2093 . + . ID=Physo145614.1;Parent=Physo145614;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1960 1 2411 scaffold_1960 . biological_region 1940 1947 0.999 + . logic_name=eponine scaffold_1960 . biological_region 1995 1997 0.999 + . logic_name=eponine scaffold_1960 . biological_region 2013 2016 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1959 1 2416 scaffold_1959 . biological_region 1476 1477 0.999 - . logic_name=eponine scaffold_1959 . repeat_region 1946 1966 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1957 1 2417 scaffold_1957 . repeat_region 345 352 . ? . description=dust scaffold_1957 . repeat_region 1938 1970 . ? . description=dust scaffold_1957 . repeat_region 1938 1970 . ? . description=trf scaffold_1957 . biological_region 2215 2216 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1958 1 2421 scaffold_1958 . repeat_region 629 820 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1956 1 2423 scaffold_1956 . biological_region 259 264 0.999 + . logic_name=eponine scaffold_1956 . biological_region 331 335 0.999 - . logic_name=eponine scaffold_1956 . biological_region 449 449 0.999 + . logic_name=eponine scaffold_1956 . biological_region 465 467 0.999 - . logic_name=eponine scaffold_1956 . biological_region 562 565 0.999 - . logic_name=eponine scaffold_1956 . biological_region 651 655 0.999 + . logic_name=eponine scaffold_1956 . biological_region 825 827 0.999 + . logic_name=eponine scaffold_1956 . biological_region 1148 1153 0.999 + . logic_name=eponine scaffold_1956 ensembl protein_coding_gene 71 1425 . - . ID=Physo109758;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_19560001;logic_name=jgi_physo1_1 scaffold_1956 ensembl transcript 71 1425 . - . ID=Physo109758;Parent=Physo109758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1956 . CDS 71 448 . - 0 ID=Physo109758;Parent=Physo109758;rank=3 scaffold_1956 . exon 71 448 . - . ID=Physo109758.3;Parent=Physo109758;constitutive=1;rank=3 scaffold_1956 . CDS 495 514 . - 0 ID=Physo109758;Parent=Physo109758;rank=2 scaffold_1956 . exon 495 514 . - . ID=Physo109758.2;Parent=Physo109758;constitutive=1;ensembl_phase=1;rank=2 scaffold_1956 . CDS 546 1425 . - 0 ID=Physo109758;Parent=Physo109758;rank=1 scaffold_1956 . exon 546 1425 . - . ID=Physo109758.1;Parent=Physo109758;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1954 1 2455 scaffold_1954 . biological_region 1795 1798 0.999 + . logic_name=eponine scaffold_1954 . biological_region 2152 2154 0.999 + . logic_name=eponine scaffold_1954 . biological_region 2221 2224 0.999 + . logic_name=eponine scaffold_1954 . biological_region 2249 2250 0.999 - . logic_name=eponine scaffold_1954 . biological_region 2289 2290 0.999 - . logic_name=eponine scaffold_1954 ensembl protein_coding_gene 561 977 . + . ID=Physo126929;biotype=protein_coding;external_name=estExt_Genewise1.C_19540001;logic_name=jgi_physo1_1 scaffold_1954 ensembl transcript 561 977 . + . ID=Physo126929;Parent=Physo126929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1954 . exon 561 977 . + . ID=Physo126929.1;Parent=Physo126929;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1954 . CDS 597 977 . + 0 ID=Physo126929;Parent=Physo126929;rank=1 scaffold_1954 ensembl protein_coding_gene 1583 1681 . + . ID=Physo126930;biotype=protein_coding;external_name=estExt_Genewise1.C_19540002;logic_name=jgi_physo1_1 scaffold_1954 ensembl transcript 1583 1681 . + . ID=Physo126930;Parent=Physo126930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1954 . exon 1583 1681 . + . ID=Physo126930.1;Parent=Physo126930;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1954 . CDS 1628 1681 . + 0 ID=Physo126930;Parent=Physo126930;rank=1 ##gff-version 3 ##sequence-region scaffold_1953 1 2461 scaffold_1953 . biological_region 1251 1251 0.999 - . logic_name=eponine scaffold_1953 ensembl protein_coding_gene 4 2320 . - . ID=Physo145612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19530001;logic_name=jgi_physo1_1 scaffold_1953 ensembl transcript 4 2320 . - . ID=Physo145612;Parent=Physo145612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1953 . CDS 4 1982 . - 0 ID=Physo145612;Parent=Physo145612;rank=2 scaffold_1953 . exon 4 1982 . - . ID=Physo145612.2;Parent=Physo145612;constitutive=1;ensembl_phase=1;rank=2 scaffold_1953 . CDS 2302 2320 . - 0 ID=Physo145612;Parent=Physo145612;rank=1 scaffold_1953 . exon 2302 2320 . - . ID=Physo145612.1;Parent=Physo145612;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1950 1 2469 scaffold_1950 . biological_region 427 429 0.999 - . logic_name=eponine scaffold_1950 . biological_region 900 902 0.999 - . logic_name=eponine scaffold_1950 . biological_region 1439 1445 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1951 1 2470 scaffold_1951 . repeat_region 1628 1642 . ? . description=dust scaffold_1951 . repeat_region 1671 1713 . ? . description=trf scaffold_1951 . biological_region 2254 2254 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1952 1 2470 scaffold_1952 . biological_region 1246 1252 0.999 + . logic_name=eponine scaffold_1952 . biological_region 1342 1345 0.999 - . logic_name=eponine scaffold_1952 . biological_region 1905 1906 0.999 - . logic_name=eponine scaffold_1952 . biological_region 2459 2460 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1949 1 2471 scaffold_1949 . biological_region 2285 2288 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1947 1 2476 scaffold_1947 . biological_region 1300 1301 0.999 + . logic_name=eponine scaffold_1947 . biological_region 1320 1325 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1948 1 2478 scaffold_1948 . biological_region 774 777 0.999 - . logic_name=eponine scaffold_1948 ensembl protein_coding_gene 554 1204 . + . ID=Physo126927;biotype=protein_coding;external_name=estExt_Genewise1.C_19480001;logic_name=jgi_physo1_1 scaffold_1948 ensembl transcript 554 1204 . + . ID=Physo126927;Parent=Physo126927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1948 . exon 554 1204 . + . ID=Physo126927.1;Parent=Physo126927;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1948 . CDS 569 1204 . + 0 ID=Physo126927;Parent=Physo126927;rank=1 ##gff-version 3 ##sequence-region scaffold_1946 1 2481 scaffold_1946 . repeat_region 1881 1889 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1945 1 2489 scaffold_1945 . biological_region 560 564 0.999 + . logic_name=eponine scaffold_1945 . repeat_region 722 767 . ? . description=trf scaffold_1945 . repeat_region 726 767 . ? . description=trf scaffold_1945 . biological_region 1891 1895 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1944 1 2497 scaffold_1944 . repeat_region 1730 1737 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1943 1 2500 scaffold_1943 . repeat_region 2450 2459 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1942 1 2504 scaffold_1942 . repeat_region 244 260 . ? . description=dust scaffold_1942 . biological_region 1200 1201 0.999 + . logic_name=eponine scaffold_1942 . repeat_region 1207 1275 . ? . description=trf scaffold_1942 . repeat_region 2296 2303 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1940 1 2507 scaffold_1940 . biological_region 910 917 0.999 + . logic_name=eponine scaffold_1940 . biological_region 967 973 0.999 + . logic_name=eponine scaffold_1940 . biological_region 1005 1008 0.999 - . logic_name=eponine scaffold_1940 . biological_region 1113 1114 0.999 + . logic_name=eponine scaffold_1940 . biological_region 1729 1732 0.999 + . logic_name=eponine scaffold_1940 . biological_region 2371 2377 0.999 + . logic_name=eponine scaffold_1940 ensembl protein_coding_gene 25 2494 . + . ID=Physo145610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19400001;logic_name=jgi_physo1_1 scaffold_1940 ensembl transcript 25 2494 . + . ID=Physo145610;Parent=Physo145610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1940 . CDS 25 711 . + 0 ID=Physo145610;Parent=Physo145610;rank=1 scaffold_1940 . exon 25 711 . + . ID=Physo145610.1;Parent=Physo145610;constitutive=1;rank=1 scaffold_1940 . CDS 834 1813 . + 0 ID=Physo145610;Parent=Physo145610;rank=2 scaffold_1940 . exon 834 1813 . + . ID=Physo145610.2;Parent=Physo145610;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1940 . CDS 1966 2494 . + 0 ID=Physo145610;Parent=Physo145610;rank=3 scaffold_1940 . exon 1966 2494 . + . ID=Physo145610.3;Parent=Physo145610;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_1941 1 2508 scaffold_1941 . repeat_region 305 312 . ? . description=dust scaffold_1941 . repeat_region 2118 2184 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1939 1 2519 scaffold_1939 . biological_region 2007 2009 0.999 + . logic_name=eponine scaffold_1939 ensembl protein_coding_gene 80 2079 . + . ID=Physo126922;biotype=protein_coding;external_name=estExt_Genewise1.C_19390001;logic_name=jgi_physo1_1 scaffold_1939 ensembl transcript 80 2079 . + . ID=Physo126922;Parent=Physo126922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1939 . exon 80 1045 . + . ID=Physo126922.1;Parent=Physo126922;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1939 . CDS 138 1045 . + 0 ID=Physo126922;Parent=Physo126922;rank=1 scaffold_1939 . CDS 1122 1227 . + 0 ID=Physo126922;Parent=Physo126922;rank=2 scaffold_1939 . exon 1122 1227 . + . ID=Physo126922.2;Parent=Physo126922;constitutive=1;ensembl_phase=2;rank=2 scaffold_1939 . CDS 1300 2079 . + 0 ID=Physo126922;Parent=Physo126922;rank=3 scaffold_1939 . exon 1300 2079 . + . ID=Physo126922.3;Parent=Physo126922;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1938 1 2527 scaffold_1938 . repeat_region 2 16 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1937 1 2544 scaffold_1937 . repeat_region 1571 1585 . ? . description=dust scaffold_1937 . repeat_region 2336 2343 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1936 1 2549 scaffold_1936 . biological_region 742 744 0.999 - . logic_name=eponine scaffold_1936 . biological_region 1222 1224 0.999 + . logic_name=eponine scaffold_1936 . biological_region 1384 1385 0.999 + . logic_name=eponine scaffold_1936 . repeat_region 1774 1829 . ? . description=trf scaffold_1936 . biological_region 1809 1812 0.999 + . logic_name=eponine scaffold_1936 . biological_region 1814 1815 0.999 - . logic_name=eponine scaffold_1936 . biological_region 1823 1825 0.999 + . logic_name=eponine scaffold_1936 . biological_region 1868 1872 0.999 + . logic_name=eponine scaffold_1936 . biological_region 1871 1875 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1934 1 2554 scaffold_1934 . biological_region 271 273 0.999 + . logic_name=eponine scaffold_1934 . biological_region 287 291 0.999 + . logic_name=eponine scaffold_1934 . biological_region 530 534 0.999 - . logic_name=eponine scaffold_1934 . biological_region 586 590 0.999 + . logic_name=eponine scaffold_1934 . repeat_region 1767 1791 . ? . description=trf scaffold_1934 . biological_region 2005 2009 0.999 + . logic_name=eponine scaffold_1934 . biological_region 2158 2162 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1935 1 2562 scaffold_1935 . biological_region 773 773 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1933 1 2564 scaffold_1933 . repeat_region 48 157 . - . description=Gypsy-2-I_PI-int scaffold_1933 . repeat_region 402 1006 . - . description=Gypsy-2-I_PI-int scaffold_1933 . repeat_region 1365 2526 . - . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_1932 1 2566 scaffold_1932 . repeat_region 308 315 . ? . description=dust scaffold_1932 . repeat_region 667 676 . ? . description=dust scaffold_1932 . biological_region 1273 1277 0.999 + . logic_name=eponine scaffold_1932 . repeat_region 2343 2410 . ? . description=trf scaffold_1932 . repeat_region 2354 2422 . ? . description=trf scaffold_1932 ensembl protein_coding_gene 1830 2318 . - . ID=Physo145607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19320001;logic_name=jgi_physo1_1 scaffold_1932 ensembl transcript 1830 2318 . - . ID=Physo145607;Parent=Physo145607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1932 . CDS 1830 2221 . - 0 ID=Physo145607;Parent=Physo145607;rank=2 scaffold_1932 . exon 1830 2221 . - . ID=Physo145607.2;Parent=Physo145607;constitutive=1;ensembl_phase=1;rank=2 scaffold_1932 . CDS 2288 2318 . - 0 ID=Physo145607;Parent=Physo145607;rank=1 scaffold_1932 . exon 2288 2318 . - . ID=Physo145607.1;Parent=Physo145607;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1931 1 2568 scaffold_1931 . repeat_region 403 413 . ? . description=dust scaffold_1931 . repeat_region 2334 2353 . ? . description=trf scaffold_1931 ensembl protein_coding_gene 902 1549 . - . ID=Physo109756;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_19310001;logic_name=jgi_physo1_1 scaffold_1931 ensembl transcript 902 1549 . - . ID=Physo109756;Parent=Physo109756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1931 . CDS 902 1546 . - 0 ID=Physo109756;Parent=Physo109756;rank=1 scaffold_1931 . exon 902 1549 . - . ID=Physo109756.1;Parent=Physo109756;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1930 1 2584 scaffold_1930 . biological_region 2299 2303 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1929 1 2592 scaffold_1929 . repeat_region 29 146 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1928 1 2604 ##gff-version 3 ##sequence-region scaffold_1927 1 2607 scaffold_1927 . repeat_region 1002 1022 . ? . description=dust scaffold_1927 . repeat_region 1002 1022 . ? . description=trf scaffold_1927 . biological_region 2179 2182 0.999 + . logic_name=eponine scaffold_1927 . biological_region 2199 2199 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1926 1 2628 scaffold_1926 . biological_region 896 901 0.999 - . logic_name=eponine scaffold_1926 . repeat_region 2508 2527 . ? . description=dust scaffold_1926 . repeat_region 2508 2527 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1925 1 2631 scaffold_1925 . biological_region 548 551 0.999 - . logic_name=eponine scaffold_1925 . biological_region 1313 1315 0.999 + . logic_name=eponine scaffold_1925 . biological_region 1390 1394 0.999 + . logic_name=eponine scaffold_1925 . biological_region 1425 1431 0.999 - . logic_name=eponine scaffold_1925 ensembl protein_coding_gene 276 1046 . - . ID=Physo145604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19250001;logic_name=jgi_physo1_1 scaffold_1925 ensembl transcript 276 1046 . - . ID=Physo145604;Parent=Physo145604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1925 . CDS 276 1046 . - 0 ID=Physo145604;Parent=Physo145604;rank=1 scaffold_1925 . exon 276 1046 . - . ID=Physo145604.1;Parent=Physo145604;constitutive=1;rank=1 scaffold_1925 ensembl protein_coding_gene 2332 2631 . + . ID=Physo145605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19250002;logic_name=jgi_physo1_1 scaffold_1925 ensembl transcript 2332 2631 . + . ID=Physo145605;Parent=Physo145605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1925 . CDS 2332 2631 . + 0 ID=Physo145605;Parent=Physo145605;rank=1 scaffold_1925 . exon 2332 2631 . + . ID=Physo145605.1;Parent=Physo145605;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1924 1 2633 ##gff-version 3 ##sequence-region scaffold_1923 1 2638 scaffold_1923 . biological_region 2356 2360 0.999 + . logic_name=eponine scaffold_1923 . repeat_region 2386 2444 . ? . description=trf scaffold_1923 . repeat_region 2395 2432 . ? . description=trf scaffold_1923 . repeat_region 2410 2504 . ? . description=trf scaffold_1923 . repeat_region 2437 2567 . ? . description=trf scaffold_1923 . repeat_region 2465 2522 . ? . description=dust scaffold_1923 . repeat_region 2468 2634 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1922 1 2650 scaffold_1922 . repeat_region 343 350 . ? . description=dust scaffold_1922 . repeat_region 2344 2389 . ? . description=dust scaffold_1922 ensembl protein_coding_gene 5 2262 . + . ID=Physo126918;biotype=protein_coding;external_name=estExt_Genewise1.C_19220001;logic_name=jgi_physo1_1 scaffold_1922 ensembl transcript 5 2262 . + . ID=Physo126918;Parent=Physo126918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1922 . exon 5 337 . + . ID=Physo126918.1;Parent=Physo126918;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1922 . CDS 194 337 . + 0 ID=Physo126918;Parent=Physo126918;rank=1 scaffold_1922 . CDS 409 2262 . + 0 ID=Physo126918;Parent=Physo126918;rank=2 scaffold_1922 . exon 409 2262 . + . ID=Physo126918.2;Parent=Physo126918;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1921 1 2662 scaffold_1921 ensembl protein_coding_gene 431 2217 . - . ID=Physo145602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19210001;logic_name=jgi_physo1_1 scaffold_1921 ensembl transcript 431 2217 . - . ID=Physo145602;Parent=Physo145602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1921 . CDS 431 1651 . - 0 ID=Physo145602;Parent=Physo145602;rank=2 scaffold_1921 . exon 431 1651 . - . ID=Physo145602.2;Parent=Physo145602;constitutive=1;rank=2 scaffold_1921 . CDS 2044 2217 . - 0 ID=Physo145602;Parent=Physo145602;rank=1 scaffold_1921 . exon 2044 2217 . - . ID=Physo145602.1;Parent=Physo145602;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1920 1 2675 scaffold_1920 . repeat_region 734 741 . ? . description=dust scaffold_1920 . biological_region 1344 1353 0.999 + . logic_name=eponine scaffold_1920 . biological_region 1374 1379 0.999 + . logic_name=eponine scaffold_1920 . biological_region 1454 1455 0.999 + . logic_name=eponine scaffold_1920 . biological_region 1892 1897 0.999 + . logic_name=eponine scaffold_1920 . biological_region 1987 1989 0.999 - . logic_name=eponine scaffold_1920 . biological_region 2008 2008 0.999 - . logic_name=eponine scaffold_1920 ensembl protein_coding_gene 1829 2668 . + . ID=Physo145601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19200001;logic_name=jgi_physo1_1 scaffold_1920 ensembl transcript 1829 2668 . + . ID=Physo145601;Parent=Physo145601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1920 . exon 1829 2668 . + . ID=Physo145601.1;Parent=Physo145601;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1920 . CDS 1878 2666 . + 0 ID=Physo145601;Parent=Physo145601;rank=1 ##gff-version 3 ##sequence-region scaffold_1919 1 2695 scaffold_1919 . repeat_region 1031 2222 . + . description=Gypsy-2-I_PI-int scaffold_1919 . repeat_region 1257 1270 . ? . description=dust scaffold_1919 . repeat_region 2432 2682 . + . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_1918 1 2704 scaffold_1918 . repeat_region 6 400 . ? . description=trf scaffold_1918 . biological_region 1926 1927 0.999 + . logic_name=eponine scaffold_1918 . biological_region 2066 2067 0.999 - . logic_name=eponine scaffold_1918 . repeat_region 2222 2264 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1917 1 2707 scaffold_1917 ensembl protein_coding_gene 448 966 . + . ID=Physo126917;biotype=protein_coding;external_name=estExt_Genewise1.C_19170001;logic_name=jgi_physo1_1 scaffold_1917 ensembl transcript 448 966 . + . ID=Physo126917;Parent=Physo126917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1917 . exon 448 966 . + . ID=Physo126917.1;Parent=Physo126917;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1917 . CDS 490 966 . + 0 ID=Physo126917;Parent=Physo126917;rank=1 scaffold_1917 ensembl protein_coding_gene 1131 2390 . - . ID=Physo145600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19170001;logic_name=jgi_physo1_1 scaffold_1917 ensembl transcript 1131 2390 . - . ID=Physo145600;Parent=Physo145600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1917 . CDS 1131 2390 . - 0 ID=Physo145600;Parent=Physo145600;rank=1 scaffold_1917 . exon 1131 2390 . - . ID=Physo145600.1;Parent=Physo145600;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1916 1 2717 ##gff-version 3 ##sequence-region scaffold_1915 1 2718 scaffold_1915 . repeat_region 481 727 . - . description=Polinton-1_PI scaffold_1915 . repeat_region 1908 2715 . - . description=Polinton-1_PI scaffold_1915 ensembl protein_coding_gene 314 664 . - . ID=Physo126915;biotype=protein_coding;external_name=estExt_Genewise1.C_19150001;logic_name=jgi_physo1_1 scaffold_1915 ensembl transcript 314 664 . - . ID=Physo126915;Parent=Physo126915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1915 . exon 314 333 . - . ID=Physo126915.2;Parent=Physo126915;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_1915 . CDS 315 333 . - 0 ID=Physo126915;Parent=Physo126915;rank=2 scaffold_1915 . CDS 452 648 . - 0 ID=Physo126915;Parent=Physo126915;rank=1 scaffold_1915 . exon 452 664 . - . ID=Physo126915.1;Parent=Physo126915;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1915 ensembl protein_coding_gene 1218 1520 . - . ID=Physo126916;biotype=protein_coding;external_name=estExt_Genewise1.C_19150002;logic_name=jgi_physo1_1 scaffold_1915 ensembl transcript 1218 1520 . - . ID=Physo126916;Parent=Physo126916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1915 . CDS 1218 1457 . - 0 ID=Physo126916;Parent=Physo126916;rank=1 scaffold_1915 . exon 1218 1520 . - . ID=Physo126916.1;Parent=Physo126916;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1914 1 2720 scaffold_1914 . repeat_region 324 2690 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1480 1 2728 scaffold_1480 . repeat_region 2330 2359 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1913 1 2728 scaffold_1913 . repeat_region 384 436 . ? . description=trf scaffold_1913 . biological_region 600 601 0.999 - . logic_name=eponine scaffold_1913 . biological_region 1757 1758 0.999 + . logic_name=eponine scaffold_1913 . biological_region 1938 1941 0.999 - . logic_name=eponine scaffold_1913 . biological_region 2365 2365 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1098 1 2729 scaffold_1098 . repeat_region 344 690 . - . description=GypsyPi-1c_I-int scaffold_1098 . repeat_region 1851 2197 . - . description=GypsyPi-1c_I-int scaffold_1098 ensembl protein_coding_gene 295 549 . - . ID=Physo126390;biotype=protein_coding;external_name=estExt_Genewise1.C_10980002;logic_name=jgi_physo1_1 scaffold_1098 ensembl transcript 295 549 . - . ID=Physo126390;Parent=Physo126390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1098 . CDS 295 531 . - 0 ID=Physo126390;Parent=Physo126390;rank=1 scaffold_1098 . exon 295 549 . - . ID=Physo126390.1;Parent=Physo126390;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1911 1 2736 scaffold_1911 . biological_region 105 108 0.999 + . logic_name=eponine scaffold_1911 . biological_region 124 126 0.999 - . logic_name=eponine scaffold_1911 . biological_region 177 181 0.999 - . logic_name=eponine scaffold_1911 . biological_region 199 200 0.999 - . logic_name=eponine scaffold_1911 . repeat_region 2338 2373 . ? . description=trf scaffold_1911 . repeat_region 2434 2486 . ? . description=trf scaffold_1911 . repeat_region 2434 2486 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1912 1 2737 scaffold_1912 . biological_region 559 560 0.999 + . logic_name=eponine scaffold_1912 . biological_region 769 769 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1910 1 2742 scaffold_1910 . biological_region 1737 1741 0.999 - . logic_name=eponine scaffold_1910 . repeat_region 2569 2603 . ? . description=trf scaffold_1910 ensembl protein_coding_gene 1560 2409 . - . ID=Physo145598;biotype=protein_coding;description=PsAvh202a1PsAvh202a2 [Source:UniProtKB/TrEMBL%3BAcc:E0W5S3];external_name=estExt_fgenesh1_pg.C_19100001;logic_name=jgi_physo1_1 scaffold_1910 ensembl transcript 1560 2409 . - . ID=Physo145598;Parent=Physo145598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1910 . CDS 1560 1867 . - 0 ID=Physo145598;Parent=Physo145598;rank=2 scaffold_1910 . exon 1560 1867 . - . ID=Physo145598.2;Parent=Physo145598;constitutive=1;ensembl_phase=1;rank=2 scaffold_1910 . CDS 1968 2409 . - 0 ID=Physo145598;Parent=Physo145598;rank=1 scaffold_1910 . exon 1968 2409 . - . ID=Physo145598.1;Parent=Physo145598;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1909 1 2748 scaffold_1909 . biological_region 2373 2376 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1908 1 2749 scaffold_1908 . repeat_region 602 609 . ? . description=dust scaffold_1908 . biological_region 780 786 0.999 + . logic_name=eponine scaffold_1908 . repeat_region 1002 1037 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1907 1 2751 scaffold_1907 . biological_region 1639 1642 0.999 + . logic_name=eponine scaffold_1907 . biological_region 1758 1764 0.999 + . logic_name=eponine scaffold_1907 . biological_region 1777 1783 0.999 - . logic_name=eponine scaffold_1907 . biological_region 1818 1820 0.999 - . logic_name=eponine scaffold_1907 . biological_region 2408 2412 0.999 + . logic_name=eponine scaffold_1907 . biological_region 2454 2459 0.999 - . logic_name=eponine scaffold_1907 ensembl protein_coding_gene 229 1029 . - . ID=Physo145596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19070001;logic_name=jgi_physo1_1 scaffold_1907 ensembl transcript 229 1029 . - . ID=Physo145596;Parent=Physo145596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1907 . exon 229 418 . - . ID=Physo145596.3;Parent=Physo145596;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1907 . CDS 230 418 . - 0 ID=Physo145596;Parent=Physo145596;rank=3 scaffold_1907 . CDS 490 606 . - 0 ID=Physo145596;Parent=Physo145596;rank=2 scaffold_1907 . exon 490 606 . - . ID=Physo145596.2;Parent=Physo145596;constitutive=1;rank=2 scaffold_1907 . CDS 677 1027 . - 0 ID=Physo145596;Parent=Physo145596;rank=1 scaffold_1907 . exon 677 1029 . - . ID=Physo145596.1;Parent=Physo145596;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1907 ensembl protein_coding_gene 1628 2751 . + . ID=Physo145597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_19070002;logic_name=jgi_physo1_1 scaffold_1907 ensembl transcript 1628 2751 . + . ID=Physo145597;Parent=Physo145597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1907 . CDS 1628 2749 . + 0 ID=Physo145597;Parent=Physo145597;rank=1 scaffold_1907 . exon 1628 2751 . + . ID=Physo145597.1;Parent=Physo145597;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1906 1 2756 scaffold_1906 . repeat_region 410 418 . ? . description=dust scaffold_1906 . repeat_region 1226 1252 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1905 1 2767 scaffold_1905 ensembl protein_coding_gene 908 1228 . + . ID=Physo126910;biotype=protein_coding;external_name=estExt_Genewise1.C_19050001;logic_name=jgi_physo1_1 scaffold_1905 ensembl transcript 908 1228 . + . ID=Physo126910;Parent=Physo126910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1905 . exon 908 1228 . + . ID=Physo126910.1;Parent=Physo126910;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1905 . CDS 938 1228 . + 0 ID=Physo126910;Parent=Physo126910;rank=1 scaffold_1905 ensembl protein_coding_gene 465 542 . - . ID=Physo126912;biotype=protein_coding;external_name=estExt_Genewise1.C_19050003;logic_name=jgi_physo1_1 scaffold_1905 ensembl transcript 465 542 . - . ID=Physo126912;Parent=Physo126912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1905 . CDS 465 542 . - 0 ID=Physo126912;Parent=Physo126912;rank=1 scaffold_1905 . exon 465 542 . - . ID=Physo126912.1;Parent=Physo126912;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1904 1 2768 ##gff-version 3 ##sequence-region scaffold_1903 1 2777 scaffold_1903 . repeat_region 1 1522 . ? . description=trf scaffold_1903 . biological_region 1457 1459 0.999 + . logic_name=eponine scaffold_1903 . repeat_region 1946 1975 . ? . description=trf scaffold_1903 . repeat_region 1949 1985 . ? . description=trf scaffold_1903 . repeat_region 1949 1991 . ? . description=trf scaffold_1903 . repeat_region 2279 2291 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1902 1 2785 scaffold_1902 . biological_region 286 291 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1901 1 2786 ##gff-version 3 ##sequence-region scaffold_1899 1 2817 scaffold_1899 . biological_region 1903 1909 0.999 + . logic_name=eponine scaffold_1899 . biological_region 1945 1950 0.999 - . logic_name=eponine scaffold_1899 . biological_region 1973 1977 0.999 + . logic_name=eponine scaffold_1899 . biological_region 1987 1989 0.999 + . logic_name=eponine scaffold_1899 . repeat_region 2017 2073 . ? . description=dust scaffold_1899 . biological_region 2053 2055 0.999 + . logic_name=eponine scaffold_1899 . biological_region 2062 2069 0.999 + . logic_name=eponine scaffold_1899 . biological_region 2094 2099 0.999 - . logic_name=eponine scaffold_1899 ensembl protein_coding_gene 1 2572 . + . ID=Physo145595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18990001;logic_name=jgi_physo1_1 scaffold_1899 ensembl transcript 1 2572 . + . ID=Physo145595;Parent=Physo145595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1899 . exon 1 407 . + . ID=Physo145595.1;Parent=Physo145595;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1899 . CDS 167 407 . + 0 ID=Physo145595;Parent=Physo145595;rank=1 scaffold_1899 . CDS 501 2572 . + 0 ID=Physo145595;Parent=Physo145595;rank=2 scaffold_1899 . exon 501 2572 . + . ID=Physo145595.2;Parent=Physo145595;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1898 1 2820 scaffold_1898 . biological_region 2494 2499 0.999 - . logic_name=eponine scaffold_1898 . biological_region 2577 2581 0.999 + . logic_name=eponine scaffold_1898 ensembl protein_coding_gene 15 2820 . + . ID=Physo145594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18980001;logic_name=jgi_physo1_1 scaffold_1898 ensembl transcript 15 2820 . + . ID=Physo145594;Parent=Physo145594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1898 . CDS 15 2819 . + 0 ID=Physo145594;Parent=Physo145594;rank=1 scaffold_1898 . exon 15 2820 . + . ID=Physo145594.1;Parent=Physo145594;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1900 1 2821 scaffold_1900 . repeat_region 448 564 . ? . description=trf scaffold_1900 . repeat_region 1937 1953 . ? . description=dust scaffold_1900 . repeat_region 2261 2308 . ? . description=trf scaffold_1900 . repeat_region 2267 2308 . ? . description=trf scaffold_1900 . repeat_region 2415 2463 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1897 1 2838 scaffold_1897 . repeat_region 2163 2220 . ? . description=trf scaffold_1897 . biological_region 2643 2647 0.999 + . logic_name=eponine scaffold_1897 . repeat_region 2695 2714 . ? . description=trf scaffold_1897 . repeat_region 2761 2770 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1896 1 2847 ##gff-version 3 ##sequence-region scaffold_1895 1 2865 ##gff-version 3 ##sequence-region scaffold_1894 1 2871 scaffold_1894 . repeat_region 384 392 . ? . description=dust scaffold_1894 . repeat_region 1744 1751 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1893 1 2883 scaffold_1893 . biological_region 466 472 0.999 + . logic_name=eponine scaffold_1893 . biological_region 496 497 0.999 + . logic_name=eponine scaffold_1893 . biological_region 523 524 0.999 + . logic_name=eponine scaffold_1893 . biological_region 542 542 0.999 - . logic_name=eponine scaffold_1893 . biological_region 562 564 0.999 + . logic_name=eponine scaffold_1893 . biological_region 588 592 0.999 - . logic_name=eponine scaffold_1893 . biological_region 694 696 0.999 - . logic_name=eponine scaffold_1893 . biological_region 1213 1216 0.999 + . logic_name=eponine scaffold_1893 . biological_region 1438 1445 0.999 - . logic_name=eponine scaffold_1893 . biological_region 1578 1581 0.999 - . logic_name=eponine scaffold_1893 . biological_region 1748 1749 0.999 - . logic_name=eponine scaffold_1893 . biological_region 1949 1954 0.999 - . logic_name=eponine scaffold_1893 . biological_region 2205 2209 0.999 - . logic_name=eponine scaffold_1893 . biological_region 2400 2405 0.999 + . logic_name=eponine scaffold_1893 . biological_region 2428 2435 0.999 + . logic_name=eponine scaffold_1893 . biological_region 2478 2479 0.999 + . logic_name=eponine scaffold_1893 . biological_region 2528 2532 0.999 - . logic_name=eponine scaffold_1893 . biological_region 2754 2758 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1892 1 2910 ##gff-version 3 ##sequence-region scaffold_1891 1 2916 scaffold_1891 . biological_region 672 679 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1890 1 2924 scaffold_1890 . biological_region 158 159 0.999 - . logic_name=eponine scaffold_1890 . biological_region 158 164 0.999 + . logic_name=eponine scaffold_1890 . biological_region 1924 1929 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1889 1 2932 scaffold_1889 ensembl protein_coding_gene 782 2301 . + . ID=Physo145593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18890001;logic_name=jgi_physo1_1 scaffold_1889 ensembl transcript 782 2301 . + . ID=Physo145593;Parent=Physo145593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1889 . CDS 782 2210 . + 0 ID=Physo145593;Parent=Physo145593;rank=1 scaffold_1889 . exon 782 2210 . + . ID=Physo145593.1;Parent=Physo145593;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1889 . CDS 2297 2301 . + 0 ID=Physo145593;Parent=Physo145593;rank=2 scaffold_1889 . exon 2297 2301 . + . ID=Physo145593.2;Parent=Physo145593;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1888 1 2934 scaffold_1888 . repeat_region 17 1185 . - . description=Gypsy-2-I_PI-int scaffold_1888 . repeat_region 1671 1710 . ? . description=dust scaffold_1888 . repeat_region 1677 1710 . ? . description=trf scaffold_1888 . repeat_region 1678 1708 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1887 1 2953 scaffold_1887 ensembl protein_coding_gene 1840 2952 . - . ID=Physo145592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18870001;logic_name=jgi_physo1_1 scaffold_1887 ensembl transcript 1840 2952 . - . ID=Physo145592;Parent=Physo145592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1887 . exon 1840 2952 . - . ID=Physo145592.1;Parent=Physo145592;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1887 . CDS 1874 2482 . - 0 ID=Physo145592;Parent=Physo145592;rank=1 ##gff-version 3 ##sequence-region scaffold_1886 1 2957 scaffold_1886 . repeat_region 2217 2257 . ? . description=dust scaffold_1886 . repeat_region 2217 2257 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1885 1 2961 ##gff-version 3 ##sequence-region scaffold_1883 1 2963 scaffold_1883 . biological_region 1552 1552 0.999 - . logic_name=eponine scaffold_1883 ensembl protein_coding_gene 886 1785 . - . ID=Physo145591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18830001;logic_name=jgi_physo1_1 scaffold_1883 ensembl transcript 886 1785 . - . ID=Physo145591;Parent=Physo145591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1883 . CDS 886 1431 . - 0 ID=Physo145591;Parent=Physo145591;rank=1 scaffold_1883 . exon 886 1785 . - . ID=Physo145591.1;Parent=Physo145591;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1884 1 2964 scaffold_1884 . biological_region 123 125 0.999 + . logic_name=eponine scaffold_1884 . biological_region 200 201 0.999 - . logic_name=eponine scaffold_1884 . biological_region 253 257 0.999 + . logic_name=eponine scaffold_1884 . biological_region 273 275 0.999 + . logic_name=eponine scaffold_1884 . biological_region 309 313 0.999 - . logic_name=eponine scaffold_1884 . biological_region 366 366 0.999 + . logic_name=eponine scaffold_1884 . biological_region 498 502 0.999 + . logic_name=eponine scaffold_1884 . biological_region 525 528 0.999 - . logic_name=eponine scaffold_1884 . biological_region 571 575 0.999 - . logic_name=eponine scaffold_1884 . biological_region 742 743 0.999 + . logic_name=eponine scaffold_1884 . biological_region 1058 1058 0.999 - . logic_name=eponine scaffold_1884 . biological_region 1111 1117 0.999 + . logic_name=eponine scaffold_1884 . biological_region 1243 1249 0.999 + . logic_name=eponine scaffold_1884 . biological_region 1347 1351 0.999 + . logic_name=eponine scaffold_1884 . biological_region 1363 1365 0.999 + . logic_name=eponine scaffold_1884 . biological_region 1386 1393 0.999 + . logic_name=eponine scaffold_1884 . biological_region 1393 1397 0.999 - . logic_name=eponine scaffold_1884 . biological_region 1486 1487 0.999 - . logic_name=eponine scaffold_1884 . biological_region 1515 1519 0.999 - . logic_name=eponine scaffold_1884 . biological_region 1538 1543 0.999 + . logic_name=eponine scaffold_1884 . repeat_region 1546 1647 . ? . description=trf scaffold_1884 . repeat_region 1570 1617 . ? . description=trf scaffold_1884 . biological_region 1574 1577 0.999 + . logic_name=eponine scaffold_1884 . biological_region 1624 1631 0.999 - . logic_name=eponine scaffold_1884 . biological_region 1946 1946 0.999 - . logic_name=eponine scaffold_1884 . biological_region 2050 2051 0.999 + . logic_name=eponine scaffold_1884 ensembl tRNA_gene 2876 2947 . - . ID=EPrPSOG00000000214;biotype=tRNA;description=tRNA-Asp for anticodon GUC [Source:TRNASCAN_SE%3BAcc:tRNA-Asp];external_name=tRNA-Asp;logic_name=ncrna_eg scaffold_1884 ensembl transcript 2876 2947 . - . ID=EPrPSOT00000000214;Parent=EPrPSOG00000000214;biotype=tRNA;logic_name=ncrna_eg scaffold_1884 . exon 2876 2947 . - . ID=EPrPSOE00000000214;Parent=EPrPSOT00000000214;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1882 1 2975 scaffold_1882 . repeat_region 1295 1342 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1881 1 2987 scaffold_1881 . repeat_region 2066 2105 . ? . description=trf scaffold_1881 . repeat_region 2069 2113 . ? . description=trf scaffold_1881 ensembl protein_coding_gene 2605 2985 . + . ID=Physo126890;biotype=protein_coding;external_name=estExt_Genewise1.C_18810002;logic_name=jgi_physo1_1 scaffold_1881 ensembl transcript 2605 2985 . + . ID=Physo126890;Parent=Physo126890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1881 . exon 2605 2985 . + . ID=Physo126890.1;Parent=Physo126890;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1881 . CDS 2734 2985 . + 0 ID=Physo126890;Parent=Physo126890;rank=1 scaffold_1881 ensembl protein_coding_gene 47 1522 . + . ID=Physo145590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18810001;logic_name=jgi_physo1_1 scaffold_1881 ensembl transcript 47 1522 . + . ID=Physo145590;Parent=Physo145590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1881 . exon 47 1362 . + . ID=Physo145590.1;Parent=Physo145590;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1881 . CDS 192 1362 . + 0 ID=Physo145590;Parent=Physo145590;rank=1 scaffold_1881 . CDS 1509 1522 . + 0 ID=Physo145590;Parent=Physo145590;rank=2 scaffold_1881 . exon 1509 1522 . + . ID=Physo145590.2;Parent=Physo145590;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1880 1 2993 ##gff-version 3 ##sequence-region scaffold_1879 1 2995 scaffold_1879 ensembl protein_coding_gene 50 816 . - . ID=Physo145588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18790001;logic_name=jgi_physo1_1 scaffold_1879 ensembl transcript 50 816 . - . ID=Physo145588;Parent=Physo145588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1879 . exon 50 87 . - . ID=Physo145588.3;Parent=Physo145588;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1879 . CDS 52 87 . - 0 ID=Physo145588;Parent=Physo145588;rank=3 scaffold_1879 . CDS 151 511 . - 0 ID=Physo145588;Parent=Physo145588;rank=2 scaffold_1879 . exon 151 511 . - . ID=Physo145588.2;Parent=Physo145588;constitutive=1;ensembl_phase=2;rank=2 scaffold_1879 . CDS 572 816 . - 0 ID=Physo145588;Parent=Physo145588;rank=1 scaffold_1879 . exon 572 816 . - . ID=Physo145588.1;Parent=Physo145588;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1879 ensembl protein_coding_gene 2503 2995 . - . ID=Physo145589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18790002;logic_name=jgi_physo1_1 scaffold_1879 ensembl transcript 2503 2995 . - . ID=Physo145589;Parent=Physo145589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1879 . CDS 2503 2919 . - 0 ID=Physo145589;Parent=Physo145589;rank=1 scaffold_1879 . exon 2503 2995 . - . ID=Physo145589.1;Parent=Physo145589;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1878 1 2998 scaffold_1878 . repeat_region 68 347 . - . description=GypsyPi-1c_I-int scaffold_1878 . biological_region 122 122 0.999 + . logic_name=eponine scaffold_1878 . repeat_region 478 527 . ? . description=dust scaffold_1878 . repeat_region 478 527 . ? . description=trf scaffold_1878 . repeat_region 650 2978 . - . description=GypsyPi-1c_I-int scaffold_1878 . biological_region 1555 1557 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1877 1 3003 ##gff-version 3 ##sequence-region scaffold_1757 1 3005 scaffold_1757 . repeat_region 329 336 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1876 1 3005 scaffold_1876 . repeat_region 2694 2730 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1875 1 3016 scaffold_1875 . biological_region 2128 2129 0.999 + . logic_name=eponine scaffold_1875 ensembl protein_coding_gene 1 1345 . + . ID=Physo145586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18750001;logic_name=jgi_physo1_1 scaffold_1875 ensembl transcript 1 1345 . + . ID=Physo145586;Parent=Physo145586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1875 . exon 1 236 . + . ID=Physo145586.1;Parent=Physo145586;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1875 . CDS 116 236 . + 0 ID=Physo145586;Parent=Physo145586;rank=1 scaffold_1875 . CDS 308 1161 . + 0 ID=Physo145586;Parent=Physo145586;rank=2 scaffold_1875 . exon 308 1161 . + . ID=Physo145586.2;Parent=Physo145586;constitutive=1;ensembl_phase=1;rank=2 scaffold_1875 . CDS 1205 1345 . + 0 ID=Physo145586;Parent=Physo145586;rank=3 scaffold_1875 . exon 1205 1345 . + . ID=Physo145586.3;Parent=Physo145586;constitutive=1;rank=3 scaffold_1875 ensembl protein_coding_gene 2073 3013 . + . ID=Physo145587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18750002;logic_name=jgi_physo1_1 scaffold_1875 ensembl transcript 2073 3013 . + . ID=Physo145587;Parent=Physo145587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1875 . exon 2073 2635 . + . ID=Physo145587.1;Parent=Physo145587;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1875 . CDS 2104 2635 . + 0 ID=Physo145587;Parent=Physo145587;rank=1 scaffold_1875 . CDS 2707 3011 . + 0 ID=Physo145587;Parent=Physo145587;rank=2 scaffold_1875 . exon 2707 3013 . + . ID=Physo145587.2;Parent=Physo145587;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1874 1 3021 scaffold_1874 . repeat_region 148 734 . - . description=Polinton-1_PI scaffold_1874 . repeat_region 1021 1598 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1873 1 3029 scaffold_1873 . biological_region 200 202 0.999 + . logic_name=eponine scaffold_1873 . biological_region 831 836 0.999 + . logic_name=eponine scaffold_1873 . repeat_region 1530 1539 . ? . description=dust scaffold_1873 . repeat_region 2214 2221 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1872 1 3031 ##gff-version 3 ##sequence-region scaffold_1871 1 3037 scaffold_1871 . biological_region 1390 1390 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_2263 1 3066 scaffold_2263 . repeat_region 1 3066 . ? . description=trf scaffold_2263 . repeat_region 1 3066 . ? . description=trf scaffold_2263 . repeat_region 1525 1896 . ? . description=trf scaffold_2263 . repeat_region 1694 1727 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1870 1 3099 scaffold_1870 . repeat_region 105 119 . ? . description=dust scaffold_1870 ensembl protein_coding_gene 693 1268 . + . ID=Physo145584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18700001;logic_name=jgi_physo1_1 scaffold_1870 ensembl transcript 693 1268 . + . ID=Physo145584;Parent=Physo145584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1870 . CDS 693 695 . + 0 ID=Physo145584;Parent=Physo145584;rank=1 scaffold_1870 . exon 693 695 . + . ID=Physo145584.1;Parent=Physo145584;constitutive=1;rank=1 scaffold_1870 . CDS 766 1092 . + 0 ID=Physo145584;Parent=Physo145584;rank=2 scaffold_1870 . exon 766 1092 . + . ID=Physo145584.2;Parent=Physo145584;constitutive=1;rank=2 scaffold_1870 . CDS 1167 1268 . + 0 ID=Physo145584;Parent=Physo145584;rank=3 scaffold_1870 . exon 1167 1268 . + . ID=Physo145584.3;Parent=Physo145584;constitutive=1;rank=3 scaffold_1870 ensembl protein_coding_gene 1462 2925 . - . ID=Physo145585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18700002;logic_name=jgi_physo1_1 scaffold_1870 ensembl transcript 1462 2925 . - . ID=Physo145585;Parent=Physo145585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1870 . CDS 1462 2925 . - 0 ID=Physo145585;Parent=Physo145585;rank=1 scaffold_1870 . exon 1462 2925 . - . ID=Physo145585.1;Parent=Physo145585;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1868 1 3108 scaffold_1868 . biological_region 596 605 0.999 + . logic_name=eponine scaffold_1868 . biological_region 684 689 0.999 + . logic_name=eponine scaffold_1868 . biological_region 709 714 0.999 + . logic_name=eponine scaffold_1868 . biological_region 730 735 0.999 + . logic_name=eponine scaffold_1868 . repeat_region 2922 2954 . ? . description=trf scaffold_1868 ensembl protein_coding_gene 167 2547 . - . ID=Physo145581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18680001;logic_name=jgi_physo1_1 scaffold_1868 ensembl transcript 167 2547 . - . ID=Physo145581;Parent=Physo145581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1868 . CDS 167 990 . - 0 ID=Physo145581;Parent=Physo145581;rank=3 scaffold_1868 . exon 167 990 . - . ID=Physo145581.5;Parent=Physo145581;constitutive=1;ensembl_phase=1;rank=5 scaffold_1868 . CDS 1598 1802 . - 0 ID=Physo145581;Parent=Physo145581;rank=2 scaffold_1868 . exon 1598 1802 . - . ID=Physo145581.4;Parent=Physo145581;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1868 . CDS 1874 2098 . - 0 ID=Physo145581;Parent=Physo145581;rank=1 scaffold_1868 . exon 1874 2234 . - . ID=Physo145581.3;Parent=Physo145581;constitutive=1;ensembl_phase=-1;rank=3 scaffold_1868 . exon 2297 2341 . - . ID=Physo145581.2;Parent=Physo145581;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_1868 . exon 2484 2547 . - . ID=Physo145581.1;Parent=Physo145581;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1869 1 3110 scaffold_1869 . biological_region 424 428 0.999 - . logic_name=eponine scaffold_1869 ensembl protein_coding_gene 11 1399 . + . ID=Physo145582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18690001;logic_name=jgi_physo1_1 scaffold_1869 ensembl transcript 11 1399 . + . ID=Physo145582;Parent=Physo145582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1869 . CDS 11 1282 . + 0 ID=Physo145582;Parent=Physo145582;rank=1 scaffold_1869 . exon 11 1399 . + . ID=Physo145582.1;Parent=Physo145582;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1869 ensembl protein_coding_gene 2173 3071 . - . ID=Physo145583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18690002;logic_name=jgi_physo1_1 scaffold_1869 ensembl transcript 2173 3071 . - . ID=Physo145583;Parent=Physo145583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1869 . CDS 2173 3015 . - 0 ID=Physo145583;Parent=Physo145583;rank=1 scaffold_1869 . exon 2173 3071 . - . ID=Physo145583.1;Parent=Physo145583;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1867 1 3136 scaffold_1867 . repeat_region 1186 1231 . ? . description=trf scaffold_1867 ensembl protein_coding_gene 2995 3136 . + . ID=Physo126876;biotype=protein_coding;external_name=estExt_Genewise1.C_18670001;logic_name=jgi_physo1_1 scaffold_1867 ensembl transcript 2995 3136 . + . ID=Physo126876;Parent=Physo126876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1867 . CDS 2995 3135 . + 0 ID=Physo126876;Parent=Physo126876;rank=1 scaffold_1867 . exon 2995 3136 . + . ID=Physo126876.1;Parent=Physo126876;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1867 ensembl protein_coding_gene 593 1239 . - . ID=Physo145580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18670001;logic_name=jgi_physo1_1 scaffold_1867 ensembl transcript 593 1239 . - . ID=Physo145580;Parent=Physo145580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1867 . CDS 593 679 . - 0 ID=Physo145580;Parent=Physo145580;rank=2 scaffold_1867 . exon 593 679 . - . ID=Physo145580.2;Parent=Physo145580;constitutive=1;rank=2 scaffold_1867 . CDS 955 1239 . - 0 ID=Physo145580;Parent=Physo145580;rank=1 scaffold_1867 . exon 955 1239 . - . ID=Physo145580.1;Parent=Physo145580;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1866 1 3144 scaffold_1866 . repeat_region 199 227 . ? . description=trf scaffold_1866 . repeat_region 200 220 . ? . description=dust scaffold_1866 . repeat_region 1633 1640 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1955 1 3148 scaffold_1955 . biological_region 220 221 0.999 + . logic_name=eponine scaffold_1955 . repeat_region 1120 1200 . ? . description=trf scaffold_1955 . biological_region 1747 1748 0.999 + . logic_name=eponine scaffold_1955 . biological_region 2475 2476 0.999 + . logic_name=eponine scaffold_1955 ensembl tRNA_gene 70 141 . - . ID=EPrPSOG00000000030;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_1955 ensembl transcript 70 141 . - . ID=EPrPSOT00000000030;Parent=EPrPSOG00000000030;biotype=tRNA;logic_name=ncrna_eg scaffold_1955 ensembl tRNA_gene 3034 3105 . - . ID=EPrPSOG00000000078;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_1955 ensembl transcript 3034 3105 . - . ID=EPrPSOT00000000078;Parent=EPrPSOG00000000078;biotype=tRNA;logic_name=ncrna_eg scaffold_1955 ensembl tRNA_gene 1597 1668 . - . ID=EPrPSOG00000000104;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_1955 ensembl transcript 1597 1668 . - . ID=EPrPSOT00000000104;Parent=EPrPSOG00000000104;biotype=tRNA;logic_name=ncrna_eg scaffold_1955 ensembl tRNA_gene 2854 2925 . - . ID=EPrPSOG00000000226;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_1955 ensembl transcript 2854 2925 . - . ID=EPrPSOT00000000226;Parent=EPrPSOG00000000226;biotype=tRNA;logic_name=ncrna_eg scaffold_1955 ensembl tRNA_gene 2325 2396 . - . ID=EPrPSOG00000000249;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_1955 ensembl transcript 2325 2396 . - . ID=EPrPSOT00000000249;Parent=EPrPSOG00000000249;biotype=tRNA;logic_name=ncrna_eg scaffold_1955 ensembl tRNA_gene 2145 2216 . - . ID=EPrPSOG00000000272;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_1955 ensembl transcript 2145 2216 . - . ID=EPrPSOT00000000272;Parent=EPrPSOG00000000272;biotype=tRNA;logic_name=ncrna_eg scaffold_1955 . exon 70 141 . - . ID=EPrPSOE00000000030;Parent=EPrPSOT00000000030;constitutive=1;rank=1 scaffold_1955 . exon 3034 3105 . - . ID=EPrPSOE00000000078;Parent=EPrPSOT00000000078;constitutive=1;rank=1 scaffold_1955 . exon 1597 1668 . - . ID=EPrPSOE00000000104;Parent=EPrPSOT00000000104;constitutive=1;rank=1 scaffold_1955 . exon 2854 2925 . - . ID=EPrPSOE00000000226;Parent=EPrPSOT00000000226;constitutive=1;rank=1 scaffold_1955 . exon 2325 2396 . - . ID=EPrPSOE00000000249;Parent=EPrPSOT00000000249;constitutive=1;rank=1 scaffold_1955 . exon 2145 2216 . - . ID=EPrPSOE00000000272;Parent=EPrPSOT00000000272;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1865 1 3162 scaffold_1865 . biological_region 2229 2230 0.999 + . logic_name=eponine scaffold_1865 . biological_region 2389 2396 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1864 1 3165 scaffold_1864 . repeat_region 21 32 . ? . description=dust scaffold_1864 . repeat_region 122 158 . ? . description=trf scaffold_1864 . biological_region 879 884 0.999 + . logic_name=eponine scaffold_1864 . biological_region 909 917 0.999 + . logic_name=eponine scaffold_1864 . biological_region 956 959 0.999 + . logic_name=eponine scaffold_1864 . biological_region 964 970 0.999 - . logic_name=eponine scaffold_1864 . biological_region 2636 2641 0.999 - . logic_name=eponine scaffold_1864 ensembl protein_coding_gene 2019 2706 . - . ID=Physo145579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18640001;logic_name=jgi_physo1_1 scaffold_1864 ensembl transcript 2019 2706 . - . ID=Physo145579;Parent=Physo145579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1864 . CDS 2019 2132 . - 0 ID=Physo145579;Parent=Physo145579;rank=2 scaffold_1864 . exon 2019 2132 . - . ID=Physo145579.2;Parent=Physo145579;constitutive=1;rank=2 scaffold_1864 . CDS 2269 2706 . - 0 ID=Physo145579;Parent=Physo145579;rank=1 scaffold_1864 . exon 2269 2706 . - . ID=Physo145579.1;Parent=Physo145579;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1863 1 3173 scaffold_1863 . repeat_region 2606 2629 . ? . description=dust scaffold_1863 . repeat_region 2606 2629 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1862 1 3183 scaffold_1862 . repeat_region 1449 1672 . ? . description=trf scaffold_1862 . repeat_region 1750 1783 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1861 1 3184 scaffold_1861 . biological_region 577 581 0.999 - . logic_name=eponine scaffold_1861 . biological_region 1223 1231 0.999 - . logic_name=eponine scaffold_1861 . repeat_region 1414 1441 . ? . description=trf scaffold_1861 . biological_region 1851 1855 0.999 + . logic_name=eponine scaffold_1861 . biological_region 2291 2294 0.999 + . logic_name=eponine scaffold_1861 ensembl protein_coding_gene 2349 3012 . + . ID=Physo126874;biotype=protein_coding;external_name=estExt_Genewise1.C_18610002;logic_name=jgi_physo1_1 scaffold_1861 ensembl transcript 2349 3012 . + . ID=Physo126874;Parent=Physo126874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1861 . exon 2349 2471 . + . ID=Physo126874.1;Parent=Physo126874;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1861 . exon 2541 2713 . + . ID=Physo126874.2;Parent=Physo126874;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_1861 . CDS 2559 2713 . + 0 ID=Physo126874;Parent=Physo126874;rank=1 scaffold_1861 . CDS 2781 3012 . + 0 ID=Physo126874;Parent=Physo126874;rank=2 scaffold_1861 . exon 2781 3012 . + . ID=Physo126874.3;Parent=Physo126874;constitutive=1;ensembl_phase=2;rank=3 scaffold_1861 ensembl protein_coding_gene 1 1487 . - . ID=Physo145577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18610001;logic_name=jgi_physo1_1 scaffold_1861 ensembl transcript 1 1487 . - . ID=Physo145577;Parent=Physo145577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1861 . exon 1 1487 . - . ID=Physo145577.1;Parent=Physo145577;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1861 . CDS 3 1487 . - 0 ID=Physo145577;Parent=Physo145577;rank=1 ##gff-version 3 ##sequence-region scaffold_1859 1 3202 scaffold_1859 . repeat_region 929 968 . ? . description=trf scaffold_1859 . repeat_region 929 970 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1858 1 3223 ##gff-version 3 ##sequence-region scaffold_1854 1 3244 scaffold_1854 ensembl snoRNA_gene 877 1101 . + . ID=EPrPSOG00000000126;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_1854 ensembl snoRNA 877 1101 . + . ID=EPrPSOT00000000126;Parent=EPrPSOG00000000126;biotype=snoRNA;logic_name=ncrna_eg scaffold_1854 . exon 877 1101 . + . ID=EPrPSOE00000000126;Parent=EPrPSOT00000000126;constitutive=1;rank=1 scaffold_1854 ensembl protein_coding_gene 1749 2618 . - . ID=Physo145576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18540001;logic_name=jgi_physo1_1 scaffold_1854 ensembl transcript 1749 2618 . - . ID=Physo145576;Parent=Physo145576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1854 . CDS 1749 2402 . - 0 ID=Physo145576;Parent=Physo145576;rank=3 scaffold_1854 . exon 1749 2402 . - . ID=Physo145576.3;Parent=Physo145576;constitutive=1;rank=3 scaffold_1854 . CDS 2461 2470 . - 0 ID=Physo145576;Parent=Physo145576;rank=2 scaffold_1854 . exon 2461 2470 . - . ID=Physo145576.2;Parent=Physo145576;constitutive=1;ensembl_phase=2;rank=2 scaffold_1854 . CDS 2605 2618 . - 0 ID=Physo145576;Parent=Physo145576;rank=1 scaffold_1854 . exon 2605 2618 . - . ID=Physo145576.1;Parent=Physo145576;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1851 1 3250 scaffold_1851 . biological_region 351 354 0.999 - . logic_name=eponine scaffold_1851 ensembl protein_coding_gene 1358 2958 . - . ID=Physo145575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18510001;logic_name=jgi_physo1_1 scaffold_1851 ensembl transcript 1358 2958 . - . ID=Physo145575;Parent=Physo145575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1851 . CDS 1358 1887 . - 0 ID=Physo145575;Parent=Physo145575;rank=3 scaffold_1851 . exon 1358 1887 . - . ID=Physo145575.3;Parent=Physo145575;constitutive=1;ensembl_phase=1;rank=3 scaffold_1851 . CDS 1957 2613 . - 0 ID=Physo145575;Parent=Physo145575;rank=2 scaffold_1851 . exon 1957 2613 . - . ID=Physo145575.2;Parent=Physo145575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1851 . CDS 2682 2958 . - 0 ID=Physo145575;Parent=Physo145575;rank=1 scaffold_1851 . exon 2682 2958 . - . ID=Physo145575.1;Parent=Physo145575;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1847 1 3280 scaffold_1847 . repeat_region 8 16 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1842 1 3299 scaffold_1842 . repeat_region 849 2092 . ? . description=dust scaffold_1842 . repeat_region 2640 2695 . + . description=Sola3-2_PS ##gff-version 3 ##sequence-region scaffold_1836 1 3316 scaffold_1836 . biological_region 844 848 0.999 - . logic_name=eponine scaffold_1836 . repeat_region 2157 2164 . ? . description=dust scaffold_1836 ensembl protein_coding_gene 2431 3309 . - . ID=Physo126870;biotype=protein_coding;external_name=estExt_Genewise1.C_18360001;logic_name=jgi_physo1_1 scaffold_1836 ensembl transcript 2431 3309 . - . ID=Physo126870;Parent=Physo126870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1836 . CDS 2431 3261 . - 0 ID=Physo126870;Parent=Physo126870;rank=1 scaffold_1836 . exon 2431 3309 . - . ID=Physo126870.1;Parent=Physo126870;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1834 1 3323 ##gff-version 3 ##sequence-region scaffold_1832 1 3330 scaffold_1832 . repeat_region 11 45 . ? . description=dust scaffold_1832 . repeat_region 17 45 . ? . description=trf scaffold_1832 . repeat_region 17 45 . ? . description=trf scaffold_1832 . repeat_region 972 1983 . ? . description=dust scaffold_1832 . repeat_region 2610 2956 . - . description=GypsyPi-1c_I-int scaffold_1832 ensembl protein_coding_gene 2594 2767 . - . ID=Physo126869;biotype=protein_coding;external_name=estExt_Genewise1.C_18320001;logic_name=jgi_physo1_1 scaffold_1832 ensembl transcript 2594 2767 . - . ID=Physo126869;Parent=Physo126869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1832 . exon 2594 2767 . - . ID=Physo126869.1;Parent=Physo126869;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1832 . CDS 2646 2765 . - 0 ID=Physo126869;Parent=Physo126869;rank=1 ##gff-version 3 ##sequence-region scaffold_1828 1 3336 scaffold_1828 . biological_region 197 199 0.999 - . logic_name=eponine scaffold_1828 ensembl protein_coding_gene 70 1650 . + . ID=Physo145571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18280001;logic_name=jgi_physo1_1 scaffold_1828 ensembl transcript 70 1650 . + . ID=Physo145571;Parent=Physo145571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1828 . exon 70 253 . + . ID=Physo145571.1;Parent=Physo145571;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1828 . exon 336 375 . + . ID=Physo145571.2;Parent=Physo145571;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_1828 . exon 447 548 . + . ID=Physo145571.3;Parent=Physo145571;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=3 scaffold_1828 . CDS 530 548 . + 0 ID=Physo145571;Parent=Physo145571;rank=1 scaffold_1828 . CDS 641 1119 . + 0 ID=Physo145571;Parent=Physo145571;rank=2 scaffold_1828 . exon 641 1119 . + . ID=Physo145571.4;Parent=Physo145571;constitutive=1;ensembl_phase=1;rank=4 scaffold_1828 . CDS 1183 1357 . + 0 ID=Physo145571;Parent=Physo145571;rank=3 scaffold_1828 . exon 1183 1357 . + . ID=Physo145571.5;Parent=Physo145571;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1828 . CDS 1430 1650 . + 0 ID=Physo145571;Parent=Physo145571;rank=4 scaffold_1828 . exon 1430 1650 . + . ID=Physo145571.6;Parent=Physo145571;constitutive=1;ensembl_phase=1;rank=6 scaffold_1828 ensembl protein_coding_gene 2218 3016 . + . ID=Physo145572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18280002;logic_name=jgi_physo1_1 scaffold_1828 ensembl transcript 2218 3016 . + . ID=Physo145572;Parent=Physo145572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1828 . CDS 2218 2836 . + 0 ID=Physo145572;Parent=Physo145572;rank=1 scaffold_1828 . exon 2218 2836 . + . ID=Physo145572.1;Parent=Physo145572;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1828 . CDS 2997 3016 . + 0 ID=Physo145572;Parent=Physo145572;rank=2 scaffold_1828 . exon 2997 3016 . + . ID=Physo145572.2;Parent=Physo145572;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1830 1 3336 scaffold_1830 . biological_region 260 263 0.999 - . logic_name=eponine scaffold_1830 . biological_region 289 296 0.999 + . logic_name=eponine scaffold_1830 . biological_region 312 318 0.999 - . logic_name=eponine scaffold_1830 . biological_region 352 359 0.999 - . logic_name=eponine scaffold_1830 . biological_region 409 413 0.999 + . logic_name=eponine scaffold_1830 . biological_region 585 586 0.999 + . logic_name=eponine scaffold_1830 . biological_region 611 613 0.999 - . logic_name=eponine scaffold_1830 . biological_region 915 918 0.999 + . logic_name=eponine scaffold_1830 . biological_region 1471 1474 0.999 + . logic_name=eponine scaffold_1830 . biological_region 1533 1535 0.999 + . logic_name=eponine scaffold_1830 . biological_region 1561 1566 0.999 - . logic_name=eponine scaffold_1830 . biological_region 2519 2521 0.999 - . logic_name=eponine scaffold_1830 . biological_region 3261 3268 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1819 1 3354 scaffold_1819 . repeat_region 468 478 . ? . description=dust scaffold_1819 . repeat_region 3023 3031 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1817 1 3356 scaffold_1817 . repeat_region 98 200 . ? . description=trf scaffold_1817 . repeat_region 1017 2172 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1816 1 3360 scaffold_1816 . repeat_region 485 527 . ? . description=trf scaffold_1816 . biological_region 711 714 0.999 - . logic_name=eponine scaffold_1816 . repeat_region 1037 2032 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1814 1 3362 scaffold_1814 . biological_region 226 228 0.999 + . logic_name=eponine scaffold_1814 . biological_region 438 443 0.999 + . logic_name=eponine scaffold_1814 . repeat_region 886 1932 . ? . description=dust scaffold_1814 . repeat_region 2425 2433 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1811 1 3372 scaffold_1811 . repeat_region 120 164 . ? . description=trf scaffold_1811 . biological_region 133 136 0.999 + . logic_name=eponine scaffold_1811 . biological_region 171 176 0.999 - . logic_name=eponine scaffold_1811 . biological_region 215 220 0.999 - . logic_name=eponine scaffold_1811 . biological_region 453 454 0.999 + . logic_name=eponine scaffold_1811 . biological_region 733 737 0.999 + . logic_name=eponine scaffold_1811 ensembl protein_coding_gene 419 2974 . - . ID=Physo145570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18110001;logic_name=jgi_physo1_1 scaffold_1811 ensembl transcript 419 2974 . - . ID=Physo145570;Parent=Physo145570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1811 . exon 419 995 . - . ID=Physo145570.6;Parent=Physo145570;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_1811 . CDS 705 995 . - 0 ID=Physo145570;Parent=Physo145570;rank=6 scaffold_1811 . CDS 1117 1244 . - 0 ID=Physo145570;Parent=Physo145570;rank=5 scaffold_1811 . exon 1117 1244 . - . ID=Physo145570.5;Parent=Physo145570;constitutive=1;ensembl_phase=1;rank=5 scaffold_1811 . CDS 1331 1722 . - 0 ID=Physo145570;Parent=Physo145570;rank=4 scaffold_1811 . exon 1331 1722 . - . ID=Physo145570.4;Parent=Physo145570;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1811 . CDS 1791 1890 . - 0 ID=Physo145570;Parent=Physo145570;rank=3 scaffold_1811 . exon 1791 1890 . - . ID=Physo145570.3;Parent=Physo145570;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1811 . CDS 2118 2425 . - 0 ID=Physo145570;Parent=Physo145570;rank=2 scaffold_1811 . exon 2118 2425 . - . ID=Physo145570.2;Parent=Physo145570;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1811 . CDS 2610 2974 . - 0 ID=Physo145570;Parent=Physo145570;rank=1 scaffold_1811 . exon 2610 2974 . - . ID=Physo145570.1;Parent=Physo145570;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1807 1 3378 scaffold_1807 . biological_region 654 656 0.999 - . logic_name=eponine scaffold_1807 . biological_region 752 755 0.999 - . logic_name=eponine scaffold_1807 . repeat_region 1403 1410 . ? . description=dust scaffold_1807 . repeat_region 1604 2443 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1800 1 3400 scaffold_1800 . repeat_region 1297 1343 . ? . description=trf scaffold_1800 . repeat_region 2430 2477 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1801 1 3400 scaffold_1801 . repeat_region 965 2342 . ? . description=dust scaffold_1801 ensembl protein_coding_gene 54 3039 . + . ID=Physo145569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18010001;logic_name=jgi_physo1_1 scaffold_1801 ensembl transcript 54 3039 . + . ID=Physo145569;Parent=Physo145569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1801 . exon 54 954 . + . ID=Physo145569.1;Parent=Physo145569;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1801 . CDS 366 954 . + 0 ID=Physo145569;Parent=Physo145569;rank=1 scaffold_1801 . CDS 2414 3039 . + 0 ID=Physo145569;Parent=Physo145569;rank=2 scaffold_1801 . exon 2414 3039 . + . ID=Physo145569.2;Parent=Physo145569;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1798 1 3405 scaffold_1798 . repeat_region 2553 2847 . + . description=GypsyPi-1c_LTR scaffold_1798 . repeat_region 2848 3405 . + . description=GypsyPi-1c_I-int scaffold_1798 . biological_region 3092 3093 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1848 1 3405 scaffold_1848 . repeat_region 824 2177 . ? . description=dust scaffold_1848 . biological_region 2892 2894 0.999 + . logic_name=eponine scaffold_1848 . biological_region 3179 3180 0.999 + . logic_name=eponine scaffold_1848 . biological_region 3232 3237 0.999 - . logic_name=eponine scaffold_1848 ensembl protein_coding_gene 2693 3405 . + . ID=Physo145574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_18480001;logic_name=jgi_physo1_1 scaffold_1848 ensembl transcript 2693 3405 . + . ID=Physo145574;Parent=Physo145574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1848 . CDS 2693 2730 . + 0 ID=Physo145574;Parent=Physo145574;rank=1 scaffold_1848 . exon 2693 2730 . + . ID=Physo145574.1;Parent=Physo145574;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1848 . CDS 2919 3405 . + 0 ID=Physo145574;Parent=Physo145574;rank=2 scaffold_1848 . exon 2919 3405 . + . ID=Physo145574.2;Parent=Physo145574;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1794 1 3413 scaffold_1794 . repeat_region 1 42 . ? . description=trf scaffold_1794 . repeat_region 16 60 . ? . description=trf scaffold_1794 . biological_region 42 47 0.999 - . logic_name=eponine scaffold_1794 . repeat_region 125 144 . ? . description=dust scaffold_1794 . repeat_region 341 635 . - . description=Polinton-1_PI scaffold_1794 . repeat_region 905 940 . ? . description=trf scaffold_1794 . repeat_region 1001 1053 . ? . description=trf scaffold_1794 . repeat_region 1001 1053 . ? . description=trf scaffold_1794 . repeat_region 1115 2443 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1793 1 3416 scaffold_1793 . repeat_region 820 2001 . ? . description=dust scaffold_1793 . repeat_region 2344 2368 . ? . description=dust scaffold_1793 . repeat_region 2418 2624 . ? . description=trf scaffold_1793 . repeat_region 2671 2699 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1782 1 3428 scaffold_1782 . repeat_region 1418 2486 . ? . description=dust scaffold_1782 . biological_region 2887 2893 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1784 1 3428 ##gff-version 3 ##sequence-region scaffold_1778 1 3431 scaffold_1778 . repeat_region 800 2119 . ? . description=dust scaffold_1778 . biological_region 2177 2182 0.999 + . logic_name=eponine scaffold_1778 . biological_region 2210 2215 0.999 + . logic_name=eponine scaffold_1778 . biological_region 2230 2235 0.999 - . logic_name=eponine scaffold_1778 . biological_region 2274 2277 0.999 + . logic_name=eponine scaffold_1778 . biological_region 2289 2293 0.999 - . logic_name=eponine scaffold_1778 . biological_region 2317 2318 0.999 - . logic_name=eponine scaffold_1778 . biological_region 2337 2346 0.999 - . logic_name=eponine scaffold_1778 ensembl protein_coding_gene 2120 2453 . - . ID=Physo126865;biotype=protein_coding;external_name=estExt_Genewise1.C_17780001;logic_name=jgi_physo1_1 scaffold_1778 ensembl transcript 2120 2453 . - . ID=Physo126865;Parent=Physo126865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1778 . exon 2120 2453 . - . ID=Physo126865.1;Parent=Physo126865;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1778 . CDS 2297 2452 . - 0 ID=Physo126865;Parent=Physo126865;rank=1 scaffold_1778 ensembl protein_coding_gene 2715 3431 . - . ID=Physo126866;biotype=protein_coding;external_name=estExt_Genewise1.C_17780002;logic_name=jgi_physo1_1 scaffold_1778 ensembl transcript 2715 3431 . - . ID=Physo126866;Parent=Physo126866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1778 . CDS 2715 3431 . - 0 ID=Physo126866;Parent=Physo126866;rank=1 scaffold_1778 . exon 2715 3431 . - . ID=Physo126866.1;Parent=Physo126866;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1775 1 3437 scaffold_1775 . biological_region 1342 1345 0.999 + . logic_name=eponine scaffold_1775 . biological_region 1387 1392 0.999 + . logic_name=eponine scaffold_1775 . repeat_region 1982 1991 . ? . description=dust scaffold_1775 . repeat_region 2028 2745 . ? . description=dust scaffold_1775 ensembl protein_coding_gene 1 1713 . - . ID=Physo145568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_17750001;logic_name=jgi_physo1_1 scaffold_1775 ensembl transcript 1 1713 . - . ID=Physo145568;Parent=Physo145568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1775 . exon 1 427 . - . ID=Physo145568.5;Parent=Physo145568;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_1775 . CDS 3 427 . - 0 ID=Physo145568;Parent=Physo145568;rank=5 scaffold_1775 . CDS 502 634 . - 0 ID=Physo145568;Parent=Physo145568;rank=4 scaffold_1775 . exon 502 634 . - . ID=Physo145568.4;Parent=Physo145568;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1775 . CDS 694 947 . - 0 ID=Physo145568;Parent=Physo145568;rank=3 scaffold_1775 . exon 694 947 . - . ID=Physo145568.3;Parent=Physo145568;constitutive=1;ensembl_phase=1;rank=3 scaffold_1775 . CDS 1029 1071 . - 0 ID=Physo145568;Parent=Physo145568;rank=2 scaffold_1775 . exon 1029 1071 . - . ID=Physo145568.2;Parent=Physo145568;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1775 . CDS 1150 1713 . - 0 ID=Physo145568;Parent=Physo145568;rank=1 scaffold_1775 . exon 1150 1713 . - . ID=Physo145568.1;Parent=Physo145568;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1768 1 3443 scaffold_1768 . repeat_region 822 2041 . ? . description=dust scaffold_1768 . repeat_region 2745 2752 . ? . description=dust scaffold_1768 . repeat_region 2775 2808 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1770 1 3443 scaffold_1770 . repeat_region 1064 2253 . ? . description=dust scaffold_1770 . repeat_region 2536 2670 . - . description=GypsyPi-1c_I-int scaffold_1770 . repeat_region 3142 3428 . - . description=GypsyPi-1c_I-int scaffold_1770 ensembl protein_coding_gene 2530 2634 . - . ID=Physo126860;biotype=protein_coding;external_name=estExt_Genewise1.C_17700001;logic_name=jgi_physo1_1 scaffold_1770 ensembl transcript 2530 2634 . - . ID=Physo126860;Parent=Physo126860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1770 . CDS 2530 2634 . - 0 ID=Physo126860;Parent=Physo126860;rank=1 scaffold_1770 . exon 2530 2634 . - . ID=Physo126860.1;Parent=Physo126860;constitutive=1;rank=1 scaffold_1770 ensembl protein_coding_gene 3148 3437 . - . ID=Physo126861;biotype=protein_coding;external_name=estExt_Genewise1.C_17700002;logic_name=jgi_physo1_1 scaffold_1770 ensembl transcript 3148 3437 . - . ID=Physo126861;Parent=Physo126861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1770 . exon 3148 3437 . - . ID=Physo126861.1;Parent=Physo126861;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1770 . CDS 3149 3430 . - 0 ID=Physo126861;Parent=Physo126861;rank=1 ##gff-version 3 ##sequence-region scaffold_1766 1 3448 scaffold_1766 . repeat_region 1 1248 . - . description=Gypsy-1-I_PI-int scaffold_1766 . repeat_region 1249 2251 . ? . description=dust scaffold_1766 . repeat_region 3387 3437 . - . description=GypsyPi-1c_I-int scaffold_1766 ensembl protein_coding_gene 7 716 . - . ID=Physo126857;biotype=protein_coding;external_name=estExt_Genewise1.C_17660001;logic_name=jgi_physo1_1 scaffold_1766 ensembl transcript 7 716 . - . ID=Physo126857;Parent=Physo126857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1766 . CDS 7 441 . - 0 ID=Physo126857;Parent=Physo126857;rank=1 scaffold_1766 . exon 7 716 . - . ID=Physo126857.1;Parent=Physo126857;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1766 ensembl protein_coding_gene 1037 1249 . - . ID=Physo126858;biotype=protein_coding;external_name=estExt_Genewise1.C_17660002;logic_name=jgi_physo1_1 scaffold_1766 ensembl transcript 1037 1249 . - . ID=Physo126858;Parent=Physo126858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1766 . CDS 1037 1234 . - 0 ID=Physo126858;Parent=Physo126858;rank=1 scaffold_1766 . exon 1037 1249 . - . ID=Physo126858.1;Parent=Physo126858;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1769 1 3448 scaffold_1769 . biological_region 400 401 0.999 + . logic_name=eponine scaffold_1769 . biological_region 485 487 0.999 - . logic_name=eponine scaffold_1769 . biological_region 884 887 0.999 - . logic_name=eponine scaffold_1769 . repeat_region 3020 3051 . ? . description=trf scaffold_1769 . biological_region 3079 3079 0.999 + . logic_name=eponine scaffold_1769 . biological_region 3126 3129 0.999 - . logic_name=eponine scaffold_1769 . repeat_region 3323 3350 . ? . description=dust scaffold_1769 . repeat_region 3323 3350 . ? . description=trf scaffold_1769 ensembl protein_coding_gene 9 532 . - . ID=Physo145564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_17690001;logic_name=jgi_physo1_1 scaffold_1769 ensembl transcript 9 532 . - . ID=Physo145564;Parent=Physo145564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1769 . exon 9 532 . - . ID=Physo145564.1;Parent=Physo145564;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1769 . CDS 11 532 . - 0 ID=Physo145564;Parent=Physo145564;rank=1 scaffold_1769 ensembl protein_coding_gene 2896 3294 . + . ID=Physo145565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_17690002;logic_name=jgi_physo1_1 scaffold_1769 ensembl transcript 2896 3294 . + . ID=Physo145565;Parent=Physo145565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1769 . CDS 2896 3294 . + 0 ID=Physo145565;Parent=Physo145565;rank=1 scaffold_1769 . exon 2896 3294 . + . ID=Physo145565.1;Parent=Physo145565;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1763 1 3456 scaffold_1763 . biological_region 1046 1046 0.999 - . logic_name=eponine scaffold_1763 . repeat_region 1347 2633 . ? . description=dust scaffold_1763 . repeat_region 2724 2774 . ? . description=trf scaffold_1763 . repeat_region 2837 2874 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1761 1 3459 scaffold_1761 . biological_region 489 489 0.999 + . logic_name=eponine scaffold_1761 . repeat_region 539 558 . ? . description=dust scaffold_1761 . repeat_region 1208 2227 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1755 1 3468 scaffold_1755 . repeat_region 428 467 . ? . description=trf scaffold_1755 . repeat_region 1593 2585 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1749 1 3473 scaffold_1749 . repeat_region 107 155 . ? . description=trf scaffold_1749 . biological_region 946 948 0.999 + . logic_name=eponine scaffold_1749 . biological_region 1317 1317 0.999 - . logic_name=eponine scaffold_1749 . repeat_region 1369 2362 . ? . description=dust scaffold_1749 . repeat_region 2874 2918 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1747 1 3474 scaffold_1747 . repeat_region 1102 2567 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1750 1 3475 scaffold_1750 . repeat_region 11 63 . ? . description=trf scaffold_1750 . repeat_region 11 63 . ? . description=trf scaffold_1750 . repeat_region 2772 2832 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1741 1 3480 scaffold_1741 . repeat_region 1090 2255 . ? . description=dust scaffold_1741 . biological_region 2991 2996 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1740 1 3482 scaffold_1740 . repeat_region 29 72 . ? . description=trf scaffold_1740 . biological_region 586 590 0.999 - . logic_name=eponine scaffold_1740 . repeat_region 1367 2722 . ? . description=dust scaffold_1740 . biological_region 2768 2771 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1736 1 3491 scaffold_1736 . biological_region 688 694 0.999 + . logic_name=eponine scaffold_1736 . biological_region 838 839 0.999 - . logic_name=eponine scaffold_1736 . repeat_region 906 2205 . ? . description=dust scaffold_1736 . biological_region 3246 3247 0.999 - . logic_name=eponine scaffold_1736 . biological_region 3269 3272 0.999 + . logic_name=eponine scaffold_1736 . biological_region 3385 3392 0.999 - . logic_name=eponine scaffold_1736 ensembl protein_coding_gene 2924 3491 . + . ID=Physo145563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_17360001;logic_name=jgi_physo1_1 scaffold_1736 ensembl transcript 2924 3491 . + . ID=Physo145563;Parent=Physo145563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1736 . CDS 2924 3490 . + 0 ID=Physo145563;Parent=Physo145563;rank=1 scaffold_1736 . exon 2924 3491 . + . ID=Physo145563.1;Parent=Physo145563;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1734 1 3494 scaffold_1734 . biological_region 10 15 0.999 + . logic_name=eponine scaffold_1734 . biological_region 223 223 0.999 - . logic_name=eponine scaffold_1734 . biological_region 310 315 0.999 - . logic_name=eponine scaffold_1734 . repeat_region 681 723 . ? . description=trf scaffold_1734 . biological_region 766 773 0.999 + . logic_name=eponine scaffold_1734 . biological_region 794 795 0.999 - . logic_name=eponine scaffold_1734 . biological_region 881 889 0.999 + . logic_name=eponine scaffold_1734 . repeat_region 1107 2410 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1735 1 3494 scaffold_1735 . biological_region 403 406 0.999 - . logic_name=eponine scaffold_1735 . repeat_region 1476 2551 . ? . description=dust scaffold_1735 . repeat_region 2685 2695 . ? . description=dust scaffold_1735 . repeat_region 3329 3337 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1732 1 3501 scaffold_1732 . repeat_region 446 471 . ? . description=dust scaffold_1732 . repeat_region 852 2337 . ? . description=dust scaffold_1732 . repeat_region 2632 2639 . ? . description=dust scaffold_1732 . repeat_region 3245 3275 . ? . description=trf scaffold_1732 . repeat_region 3391 3499 . + . description=(CAG)n scaffold_1732 . repeat_region 3414 3495 . ? . description=trf scaffold_1732 . repeat_region 3431 3469 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1729 1 3504 scaffold_1729 . repeat_region 1667 1674 . ? . description=dust scaffold_1729 ensembl protein_coding_gene 2495 3389 . - . ID=Physo145561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_17290001;logic_name=jgi_physo1_1 scaffold_1729 ensembl transcript 2495 3389 . - . ID=Physo145561;Parent=Physo145561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1729 . CDS 2495 2508 . - 0 ID=Physo145561;Parent=Physo145561;rank=3 scaffold_1729 . exon 2495 2508 . - . ID=Physo145561.3;Parent=Physo145561;constitutive=1;ensembl_phase=1;rank=3 scaffold_1729 . CDS 2611 2864 . - 0 ID=Physo145561;Parent=Physo145561;rank=2 scaffold_1729 . exon 2611 2864 . - . ID=Physo145561.2;Parent=Physo145561;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1729 . CDS 3082 3389 . - 0 ID=Physo145561;Parent=Physo145561;rank=1 scaffold_1729 . exon 3082 3389 . - . ID=Physo145561.1;Parent=Physo145561;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1731 1 3505 scaffold_1731 . repeat_region 80 88 . ? . description=dust scaffold_1731 ensembl protein_coding_gene 368 1495 . - . ID=Physo145562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_17310001;logic_name=jgi_physo1_1 scaffold_1731 ensembl transcript 368 1495 . - . ID=Physo145562;Parent=Physo145562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1731 . CDS 368 1495 . - 0 ID=Physo145562;Parent=Physo145562;rank=1 scaffold_1731 . exon 368 1495 . - . ID=Physo145562.1;Parent=Physo145562;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1719 1 3518 scaffold_1719 . repeat_region 18 1148 . - . description=Polinton-1_PI scaffold_1719 . repeat_region 1149 2252 . ? . description=dust scaffold_1719 . repeat_region 2483 2522 . ? . description=trf scaffold_1719 . repeat_region 2576 2852 . - . description=Polinton-1_PI scaffold_1719 . repeat_region 2907 2973 . + . description=Polinton-1_PI scaffold_1719 . repeat_region 2989 3036 . + . description=Polinton-1_PI scaffold_1719 . repeat_region 3054 3220 . - . description=Polinton-1_PI scaffold_1719 ensembl protein_coding_gene 2253 2755 . - . ID=Physo126853;biotype=protein_coding;external_name=estExt_Genewise1.C_17190001;logic_name=jgi_physo1_1 scaffold_1719 ensembl transcript 2253 2755 . - . ID=Physo126853;Parent=Physo126853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1719 . exon 2253 2598 . - . ID=Physo126853.2;Parent=Physo126853;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1719 . CDS 2255 2598 . - 0 ID=Physo126853;Parent=Physo126853;rank=2 scaffold_1719 . CDS 2677 2740 . - 0 ID=Physo126853;Parent=Physo126853;rank=1 scaffold_1719 . exon 2677 2755 . - . ID=Physo126853.1;Parent=Physo126853;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1720 1 3518 scaffold_1720 . biological_region 124 124 0.999 - . logic_name=eponine scaffold_1720 . biological_region 553 554 0.999 - . logic_name=eponine scaffold_1720 . biological_region 1259 1263 0.999 + . logic_name=eponine scaffold_1720 . biological_region 2223 2229 0.999 - . logic_name=eponine scaffold_1720 . biological_region 2247 2253 0.999 + . logic_name=eponine scaffold_1720 . biological_region 2665 2667 0.999 + . logic_name=eponine scaffold_1720 . biological_region 3125 3127 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1721 1 3519 scaffold_1721 . biological_region 1324 1329 0.999 + . logic_name=eponine scaffold_1721 ensembl protein_coding_gene 1 3467 . + . ID=Physo145560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_17210001;logic_name=jgi_physo1_1 scaffold_1721 ensembl transcript 1 3467 . + . ID=Physo145560;Parent=Physo145560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1721 . exon 1 467 . + . ID=Physo145560.1;Parent=Physo145560;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1721 . CDS 34 467 . + 0 ID=Physo145560;Parent=Physo145560;rank=1 scaffold_1721 . CDS 542 632 . + 0 ID=Physo145560;Parent=Physo145560;rank=2 scaffold_1721 . exon 542 632 . + . ID=Physo145560.2;Parent=Physo145560;constitutive=1;ensembl_phase=2;rank=2 scaffold_1721 . CDS 711 793 . + 0 ID=Physo145560;Parent=Physo145560;rank=3 scaffold_1721 . exon 711 793 . + . ID=Physo145560.3;Parent=Physo145560;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1721 . CDS 1250 1989 . + 0 ID=Physo145560;Parent=Physo145560;rank=4 scaffold_1721 . exon 1250 1989 . + . ID=Physo145560.4;Parent=Physo145560;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1721 . CDS 2965 3467 . + 0 ID=Physo145560;Parent=Physo145560;rank=5 scaffold_1721 . exon 2965 3467 . + . ID=Physo145560.5;Parent=Physo145560;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1714 1 3523 scaffold_1714 . repeat_region 976 2429 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1713 1 3527 scaffold_1713 . repeat_region 1037 2545 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1707 1 3533 scaffold_1707 . repeat_region 1170 1370 . ? . description=trf scaffold_1707 . repeat_region 1410 2515 . ? . description=dust scaffold_1707 . repeat_region 2519 2896 . + . description=Polinton-1_PI scaffold_1707 . repeat_region 2886 3533 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1724 1 3534 scaffold_1724 . repeat_region 1006 1036 . ? . description=trf scaffold_1724 . repeat_region 1217 2556 . ? . description=dust scaffold_1724 . repeat_region 2697 2784 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1704 1 3536 scaffold_1704 . repeat_region 1228 2700 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1700 1 3538 scaffold_1700 . repeat_region 365 1403 . - . description=GypsyPi-1c_I-int scaffold_1700 . repeat_region 1421 2838 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1702 1 3538 scaffold_1702 . biological_region 974 977 0.999 - . logic_name=eponine scaffold_1702 . repeat_region 1032 1051 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1703 1 3538 scaffold_1703 . repeat_region 990 2357 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1698 1 3540 scaffold_1698 . repeat_region 1318 2829 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1696 1 3541 scaffold_1696 . repeat_region 1 839 . - . description=Polinton-1_PI scaffold_1696 . repeat_region 840 2350 . ? . description=dust scaffold_1696 . repeat_region 2351 3541 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1697 1 3541 scaffold_1697 . repeat_region 690 697 . ? . description=dust scaffold_1697 . repeat_region 854 1704 . ? . description=dust scaffold_1697 . biological_region 2981 2981 0.999 + . logic_name=eponine scaffold_1697 ensembl protein_coding_gene 463 740 . - . ID=Physo126842;biotype=protein_coding;external_name=estExt_Genewise1.C_16970001;logic_name=jgi_physo1_1 scaffold_1697 ensembl transcript 463 740 . - . ID=Physo126842;Parent=Physo126842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1697 . exon 463 740 . - . ID=Physo126842.1;Parent=Physo126842;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1697 . CDS 465 707 . - 0 ID=Physo126842;Parent=Physo126842;rank=1 ##gff-version 3 ##sequence-region scaffold_1688 1 3554 scaffold_1688 . repeat_region 591 641 . ? . description=trf scaffold_1688 . repeat_region 704 741 . ? . description=trf scaffold_1688 . repeat_region 1237 2618 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1682 1 3562 scaffold_1682 . biological_region 860 864 0.999 - . logic_name=eponine scaffold_1682 . repeat_region 940 2022 . ? . description=dust scaffold_1682 ensembl protein_coding_gene 272 3540 . - . ID=Physo145554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16820001;logic_name=jgi_physo1_1 scaffold_1682 ensembl transcript 272 3540 . - . ID=Physo145554;Parent=Physo145554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1682 . CDS 272 904 . - 0 ID=Physo145554;Parent=Physo145554;rank=4 scaffold_1682 . exon 272 904 . - . ID=Physo145554.4;Parent=Physo145554;constitutive=1;rank=4 scaffold_1682 . CDS 2187 2508 . - 0 ID=Physo145554;Parent=Physo145554;rank=3 scaffold_1682 . exon 2187 2508 . - . ID=Physo145554.3;Parent=Physo145554;constitutive=1;ensembl_phase=2;rank=3 scaffold_1682 . CDS 2709 3046 . - 0 ID=Physo145554;Parent=Physo145554;rank=2 scaffold_1682 . exon 2709 3046 . - . ID=Physo145554.2;Parent=Physo145554;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1682 . CDS 3155 3385 . - 0 ID=Physo145554;Parent=Physo145554;rank=1 scaffold_1682 . exon 3155 3540 . - . ID=Physo145554.1;Parent=Physo145554;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1726 1 3562 scaffold_1726 . biological_region 796 798 0.999 + . logic_name=eponine scaffold_1726 . repeat_region 825 2325 . ? . description=dust scaffold_1726 . biological_region 2380 2381 0.999 + . logic_name=eponine scaffold_1726 . repeat_region 2544 3544 . - . description=GypsyPi-1c_I-int scaffold_1726 ensembl pseudogenic_tRNA 268 339 . + . ID=EPrPSOG00000000264;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_1726 ensembl transcript 268 339 . + . ID=EPrPSOT00000000264;Parent=EPrPSOG00000000264;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_1726 . exon 268 339 . + . ID=EPrPSOE00000000264;Parent=EPrPSOT00000000264;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1678 1 3564 scaffold_1678 . repeat_region 82 103 . ? . description=trf scaffold_1678 . biological_region 127 127 0.999 + . logic_name=eponine scaffold_1678 . biological_region 128 130 0.999 - . logic_name=eponine scaffold_1678 . biological_region 182 185 0.999 + . logic_name=eponine scaffold_1678 . biological_region 218 222 0.999 - . logic_name=eponine scaffold_1678 . biological_region 239 244 0.999 - . logic_name=eponine scaffold_1678 . biological_region 301 303 0.999 - . logic_name=eponine scaffold_1678 . biological_region 327 331 0.999 + . logic_name=eponine scaffold_1678 . biological_region 345 353 0.999 - . logic_name=eponine scaffold_1678 . biological_region 370 376 0.999 - . logic_name=eponine scaffold_1678 . biological_region 406 409 0.999 - . logic_name=eponine scaffold_1678 . biological_region 630 631 0.999 - . logic_name=eponine scaffold_1678 . biological_region 728 731 0.999 + . logic_name=eponine scaffold_1678 . biological_region 774 776 0.999 - . logic_name=eponine scaffold_1678 . biological_region 815 824 0.999 - . logic_name=eponine scaffold_1678 . repeat_region 931 2227 . ? . description=dust scaffold_1678 . biological_region 2586 2591 0.999 + . logic_name=eponine scaffold_1678 . biological_region 2615 2616 0.999 + . logic_name=eponine scaffold_1678 . biological_region 2681 2684 0.999 + . logic_name=eponine scaffold_1678 . biological_region 2710 2713 0.999 - . logic_name=eponine scaffold_1678 . biological_region 2812 2816 0.999 - . logic_name=eponine scaffold_1678 . biological_region 3332 3335 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1680 1 3565 scaffold_1680 . repeat_region 419 440 . ? . description=dust scaffold_1680 . repeat_region 419 440 . ? . description=trf scaffold_1680 . repeat_region 1094 2041 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1677 1 3566 scaffold_1677 . repeat_region 924 2340 . ? . description=dust scaffold_1677 . repeat_region 2832 2845 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1676 1 3568 scaffold_1676 . repeat_region 16 1207 . + . description=Polinton-1_PI scaffold_1676 . repeat_region 1204 1453 . + . description=Polinton-1_PI scaffold_1676 . repeat_region 1454 2865 . ? . description=dust scaffold_1676 . repeat_region 2866 3568 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1675 1 3569 scaffold_1675 . repeat_region 523 547 . ? . description=trf scaffold_1675 . biological_region 619 621 0.999 - . logic_name=eponine scaffold_1675 . repeat_region 1347 2309 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1671 1 3571 scaffold_1671 . repeat_region 1355 2071 . ? . description=dust scaffold_1671 ensembl protein_coding_gene 2613 3501 . + . ID=Physo145552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16710001;logic_name=jgi_physo1_1 scaffold_1671 ensembl transcript 2613 3501 . + . ID=Physo145552;Parent=Physo145552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1671 . CDS 2613 2909 . + 0 ID=Physo145552;Parent=Physo145552;rank=1 scaffold_1671 . exon 2613 2909 . + . ID=Physo145552.1;Parent=Physo145552;constitutive=1;rank=1 scaffold_1671 . CDS 2975 3499 . + 0 ID=Physo145552;Parent=Physo145552;rank=2 scaffold_1671 . exon 2975 3501 . + . ID=Physo145552.2;Parent=Physo145552;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_1672 1 3576 ##gff-version 3 ##sequence-region scaffold_1673 1 3576 scaffold_1673 . repeat_region 1164 2520 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1802 1 3578 scaffold_1802 . repeat_region 289 352 . ? . description=dust scaffold_1802 . repeat_region 1094 2664 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1667 1 3579 scaffold_1667 . repeat_region 979 2331 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1668 1 3579 scaffold_1668 . repeat_region 1030 1967 . ? . description=dust scaffold_1668 . biological_region 2130 2135 0.999 - . logic_name=eponine scaffold_1668 . biological_region 2153 2159 0.999 - . logic_name=eponine scaffold_1668 . biological_region 2212 2213 0.999 + . logic_name=eponine scaffold_1668 . biological_region 2347 2351 0.999 + . logic_name=eponine scaffold_1668 ensembl protein_coding_gene 590 979 . + . ID=Physo145551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16680001;logic_name=jgi_physo1_1 scaffold_1668 ensembl transcript 590 979 . + . ID=Physo145551;Parent=Physo145551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1668 . CDS 590 979 . + 0 ID=Physo145551;Parent=Physo145551;rank=1 scaffold_1668 . exon 590 979 . + . ID=Physo145551.1;Parent=Physo145551;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1666 1 3583 scaffold_1666 . repeat_region 1 309 . + . description=GypsyPi-1c_I-int scaffold_1666 . repeat_region 364 446 . ? . description=trf scaffold_1666 . biological_region 430 433 0.999 - . logic_name=eponine scaffold_1666 . repeat_region 888 2414 . ? . description=dust scaffold_1666 . biological_region 2660 2666 0.999 + . logic_name=eponine scaffold_1666 . biological_region 2689 2692 0.999 + . logic_name=eponine scaffold_1666 . biological_region 2760 2764 0.999 - . logic_name=eponine scaffold_1666 . biological_region 2778 2781 0.999 - . logic_name=eponine scaffold_1666 . repeat_region 3125 3132 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1662 1 3591 scaffold_1662 . repeat_region 374 2754 . - . description=GypsyPi-1c_I-int scaffold_1662 . biological_region 967 971 0.999 - . logic_name=eponine scaffold_1662 . biological_region 2956 2959 0.999 + . logic_name=eponine scaffold_1662 . biological_region 3352 3356 0.999 - . logic_name=eponine scaffold_1662 . biological_region 3420 3425 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1658 1 3592 scaffold_1658 . repeat_region 1192 2558 . ? . description=dust scaffold_1658 . biological_region 2989 2989 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1657 1 3593 scaffold_1657 . repeat_region 1006 2405 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1656 1 3595 scaffold_1656 . repeat_region 912 920 . ? . description=dust scaffold_1656 . repeat_region 929 978 . ? . description=trf scaffold_1656 . repeat_region 1250 2523 . ? . description=dust scaffold_1656 . repeat_region 2988 3190 . + . description=Polinton-1_PI scaffold_1656 . repeat_region 3344 3374 . + . description=Polinton-1_PI scaffold_1656 ensembl protein_coding_gene 3032 3528 . + . ID=Physo145550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16560001;logic_name=jgi_physo1_1 scaffold_1656 ensembl transcript 3032 3528 . + . ID=Physo145550;Parent=Physo145550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1656 . CDS 3032 3526 . + 0 ID=Physo145550;Parent=Physo145550;rank=1 scaffold_1656 . exon 3032 3528 . + . ID=Physo145550.1;Parent=Physo145550;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1661 1 3595 scaffold_1661 . repeat_region 522 893 . - . description=Polinton-1_PI scaffold_1661 . repeat_region 537 574 . ? . description=dust scaffold_1661 . repeat_region 894 2294 . ? . description=dust scaffold_1661 . repeat_region 2306 3503 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1653 1 3599 scaffold_1653 . repeat_region 58 106 . ? . description=trf scaffold_1653 . repeat_region 565 584 . ? . description=dust scaffold_1653 . repeat_region 853 2393 . ? . description=dust scaffold_1653 . biological_region 2740 2741 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1654 1 3601 scaffold_1654 . repeat_region 1044 1741 . ? . description=dust scaffold_1654 . biological_region 1791 1791 0.999 + . logic_name=eponine scaffold_1654 . biological_region 1914 1915 0.999 - . logic_name=eponine scaffold_1654 . biological_region 2290 2290 0.999 + . logic_name=eponine scaffold_1654 . biological_region 2387 2388 0.999 - . logic_name=eponine scaffold_1654 . biological_region 2394 2398 0.999 - . logic_name=eponine scaffold_1654 . biological_region 2450 2452 0.999 + . logic_name=eponine scaffold_1654 . biological_region 2466 2471 0.999 + . logic_name=eponine scaffold_1654 . biological_region 2493 2498 0.999 - . logic_name=eponine scaffold_1654 . biological_region 2534 2539 0.999 + . logic_name=eponine scaffold_1654 . biological_region 2540 2544 0.999 - . logic_name=eponine scaffold_1654 . biological_region 2670 2672 0.999 - . logic_name=eponine scaffold_1654 . biological_region 2732 2735 0.999 - . logic_name=eponine scaffold_1654 . biological_region 2876 2880 0.999 - . logic_name=eponine scaffold_1654 . biological_region 2933 2934 0.999 - . logic_name=eponine scaffold_1654 . repeat_region 3068 3132 . ? . description=trf scaffold_1654 . repeat_region 3187 3570 . ? . description=trf scaffold_1654 . repeat_region 3187 3601 . ? . description=trf scaffold_1654 . repeat_region 3230 3570 . ? . description=trf scaffold_1654 . repeat_region 3277 3513 . ? . description=trf scaffold_1654 . biological_region 3278 3282 0.999 - . logic_name=eponine scaffold_1654 . biological_region 3306 3312 0.999 - . logic_name=eponine scaffold_1654 . repeat_region 3307 3601 . ? . description=trf scaffold_1654 . biological_region 3336 3339 0.999 - . logic_name=eponine scaffold_1654 . biological_region 3355 3359 0.999 - . logic_name=eponine scaffold_1654 . biological_region 3382 3389 0.999 - . logic_name=eponine scaffold_1654 . biological_region 3411 3417 0.999 - . logic_name=eponine scaffold_1654 . biological_region 3442 3443 0.999 - . logic_name=eponine scaffold_1654 . biological_region 3460 3463 0.999 - . logic_name=eponine scaffold_1654 . biological_region 3487 3493 0.999 - . logic_name=eponine scaffold_1654 . biological_region 3516 3522 0.999 - . logic_name=eponine scaffold_1654 . biological_region 3547 3548 0.999 - . logic_name=eponine scaffold_1654 ensembl protein_coding_gene 1832 3588 . + . ID=Physo145549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16540001;logic_name=jgi_physo1_1 scaffold_1654 ensembl transcript 1832 3588 . + . ID=Physo145549;Parent=Physo145549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1654 . CDS 1832 3586 . + 0 ID=Physo145549;Parent=Physo145549;rank=1 scaffold_1654 . exon 1832 3588 . + . ID=Physo145549.1;Parent=Physo145549;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1659 1 3601 scaffold_1659 . repeat_region 113 120 . ? . description=dust scaffold_1659 . repeat_region 623 926 . + . description=GypsyPi-1c_LTR scaffold_1659 . repeat_region 927 1210 . + . description=GypsyPi-1c_I-int scaffold_1659 . repeat_region 1214 2794 . ? . description=dust scaffold_1659 . repeat_region 2795 3597 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1648 1 3604 scaffold_1648 . repeat_region 18 101 . ? . description=trf scaffold_1648 . repeat_region 872 879 . ? . description=dust scaffold_1648 . repeat_region 1109 2649 . ? . description=dust scaffold_1648 . biological_region 3524 3526 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1647 1 3606 scaffold_1647 . biological_region 44 46 0.999 + . logic_name=eponine scaffold_1647 . repeat_region 1951 2761 . ? . description=dust scaffold_1647 . repeat_region 3052 3060 . ? . description=dust scaffold_1647 ensembl protein_coding_gene 1 579 . + . ID=Physo126827;biotype=protein_coding;external_name=estExt_Genewise1.C_16470001;logic_name=jgi_physo1_1 scaffold_1647 ensembl transcript 1 579 . + . ID=Physo126827;Parent=Physo126827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1647 . exon 1 579 . + . ID=Physo126827.1;Parent=Physo126827;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1647 . CDS 14 262 . + 0 ID=Physo126827;Parent=Physo126827;rank=1 ##gff-version 3 ##sequence-region scaffold_1644 1 3607 scaffold_1644 . biological_region 68 68 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1643 1 3609 scaffold_1643 . repeat_region 7 978 . + . description=Polinton-1_PI scaffold_1643 . repeat_region 981 2519 . ? . description=dust scaffold_1643 . repeat_region 2520 2671 . + . description=Polinton-1_PI scaffold_1643 . repeat_region 2621 2657 . ? . description=dust scaffold_1643 . repeat_region 3274 3593 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1640 1 3615 scaffold_1640 . repeat_region 443 500 . ? . description=trf scaffold_1640 . repeat_region 497 526 . ? . description=trf scaffold_1640 . repeat_region 1646 2681 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1641 1 3616 scaffold_1641 . repeat_region 1231 2279 . ? . description=dust scaffold_1641 . repeat_region 3555 3605 . ? . description=dust scaffold_1641 . repeat_region 3556 3605 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1637 1 3618 scaffold_1637 . repeat_region 267 275 . ? . description=dust scaffold_1637 . biological_region 294 303 0.999 + . logic_name=eponine scaffold_1637 . biological_region 351 353 0.999 - . logic_name=eponine scaffold_1637 . repeat_region 1248 2574 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1723 1 3621 scaffold_1723 . repeat_region 433 440 . ? . description=dust scaffold_1723 . repeat_region 830 2082 . ? . description=dust scaffold_1723 . repeat_region 2822 2956 . ? . description=trf scaffold_1723 . repeat_region 2937 3035 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1628 1 3623 scaffold_1628 . biological_region 138 144 0.999 - . logic_name=eponine scaffold_1628 . repeat_region 875 1883 . ? . description=dust scaffold_1628 . biological_region 2414 2421 0.999 + . logic_name=eponine scaffold_1628 . repeat_region 2443 2502 . ? . description=dust scaffold_1628 . repeat_region 2444 2469 . ? . description=trf scaffold_1628 . repeat_region 2450 2506 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1635 1 3624 scaffold_1635 . repeat_region 1003 2588 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1634 1 3625 scaffold_1634 . repeat_region 1255 2724 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1632 1 3626 scaffold_1632 . repeat_region 1023 2401 . ? . description=dust scaffold_1632 . repeat_region 2697 2719 . ? . description=dust scaffold_1632 . repeat_region 2697 2719 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1630 1 3628 scaffold_1630 . biological_region 277 280 0.999 + . logic_name=eponine scaffold_1630 . repeat_region 1757 2560 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1626 1 3632 scaffold_1626 . repeat_region 914 2402 . ? . description=dust scaffold_1626 . biological_region 2881 2882 0.999 + . logic_name=eponine scaffold_1626 . repeat_region 3215 3222 . ? . description=dust scaffold_1626 . repeat_region 3318 3383 . ? . description=trf scaffold_1626 . repeat_region 3318 3407 . ? . description=trf scaffold_1626 . repeat_region 3327 3403 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1624 1 3633 scaffold_1624 . biological_region 84 85 0.999 - . logic_name=eponine scaffold_1624 . biological_region 122 125 0.999 - . logic_name=eponine scaffold_1624 . repeat_region 1219 2416 . ? . description=dust scaffold_1624 . biological_region 2846 2851 0.999 + . logic_name=eponine scaffold_1624 . repeat_region 2855 2896 . ? . description=trf scaffold_1624 . biological_region 2864 2869 0.999 - . logic_name=eponine scaffold_1624 . biological_region 2948 2954 0.999 + . logic_name=eponine scaffold_1624 . biological_region 2956 2958 0.999 - . logic_name=eponine scaffold_1624 . biological_region 2986 2987 0.999 - . logic_name=eponine scaffold_1624 . biological_region 3006 3007 0.999 - . logic_name=eponine scaffold_1624 . biological_region 3032 3035 0.999 - . logic_name=eponine scaffold_1624 . repeat_region 3039 3087 . ? . description=trf scaffold_1624 . biological_region 3453 3457 0.999 + . logic_name=eponine scaffold_1624 . biological_region 3489 3492 0.999 + . logic_name=eponine scaffold_1624 . biological_region 3517 3519 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1625 1 3633 scaffold_1625 . repeat_region 652 659 . ? . description=dust scaffold_1625 . repeat_region 970 980 . ? . description=dust scaffold_1625 . repeat_region 1022 2477 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1664 1 3640 scaffold_1664 . biological_region 393 396 0.999 - . logic_name=eponine scaffold_1664 . repeat_region 992 2521 . ? . description=dust scaffold_1664 ensembl protein_coding_gene 320 585 . + . ID=Physo126830;biotype=protein_coding;external_name=estExt_Genewise1.C_16640001;logic_name=jgi_physo1_1 scaffold_1664 ensembl transcript 320 585 . + . ID=Physo126830;Parent=Physo126830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1664 . CDS 320 484 . + 0 ID=Physo126830;Parent=Physo126830;rank=1 scaffold_1664 . exon 320 585 . + . ID=Physo126830.1;Parent=Physo126830;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1670 1 3640 scaffold_1670 . repeat_region 39 46 . ? . description=dust scaffold_1670 . repeat_region 633 640 . ? . description=dust scaffold_1670 . repeat_region 1223 2682 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1620 1 3641 scaffold_1620 . repeat_region 718 742 . ? . description=trf scaffold_1620 . repeat_region 1082 2468 . ? . description=dust scaffold_1620 . biological_region 2640 2643 0.999 + . logic_name=eponine scaffold_1620 . biological_region 2645 2650 0.999 - . logic_name=eponine scaffold_1620 . biological_region 2676 2682 0.999 - . logic_name=eponine scaffold_1620 . biological_region 2736 2737 0.999 - . logic_name=eponine scaffold_1620 ensembl protein_coding_gene 506 3229 . + . ID=Physo145545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16200001;logic_name=jgi_physo1_1 scaffold_1620 ensembl transcript 506 3229 . + . ID=Physo145545;Parent=Physo145545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1620 . CDS 506 544 . + 0 ID=Physo145545;Parent=Physo145545;rank=1 scaffold_1620 . exon 506 544 . + . ID=Physo145545.1;Parent=Physo145545;constitutive=1;rank=1 scaffold_1620 . CDS 1044 1052 . + 0 ID=Physo145545;Parent=Physo145545;rank=2 scaffold_1620 . exon 1044 1052 . + . ID=Physo145545.2;Parent=Physo145545;constitutive=1;rank=2 scaffold_1620 . CDS 2492 3229 . + 0 ID=Physo145545;Parent=Physo145545;rank=3 scaffold_1620 . exon 2492 3229 . + . ID=Physo145545.3;Parent=Physo145545;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1617 1 3645 scaffold_1617 . repeat_region 1426 2487 . ? . description=dust scaffold_1617 . repeat_region 3256 3306 . ? . description=trf scaffold_1617 . repeat_region 3256 3308 . ? . description=trf scaffold_1617 . repeat_region 3369 3406 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1614 1 3647 scaffold_1614 . repeat_region 262 312 . ? . description=trf scaffold_1614 . repeat_region 262 314 . ? . description=trf scaffold_1614 . repeat_region 354 384 . ? . description=trf scaffold_1614 . repeat_region 389 426 . ? . description=trf scaffold_1614 . repeat_region 685 692 . ? . description=dust scaffold_1614 . repeat_region 1581 2552 . ? . description=dust scaffold_1614 . biological_region 2916 2917 0.999 + . logic_name=eponine scaffold_1614 . biological_region 3110 3111 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1608 1 3650 scaffold_1608 . repeat_region 1105 1164 . ? . description=trf scaffold_1608 . repeat_region 1105 1185 . ? . description=trf scaffold_1608 . repeat_region 1121 1164 . ? . description=dust scaffold_1608 . repeat_region 1247 2515 . ? . description=dust scaffold_1608 ensembl protein_coding_gene 22 3589 . - . ID=Physo145543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16080001;logic_name=jgi_physo1_1 scaffold_1608 ensembl transcript 22 3589 . - . ID=Physo145543;Parent=Physo145543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1608 . CDS 22 156 . - 0 ID=Physo145543;Parent=Physo145543;rank=4 scaffold_1608 . exon 22 156 . - . ID=Physo145543.4;Parent=Physo145543;constitutive=1;rank=4 scaffold_1608 . CDS 517 1231 . - 0 ID=Physo145543;Parent=Physo145543;rank=3 scaffold_1608 . exon 517 1231 . - . ID=Physo145543.3;Parent=Physo145543;constitutive=1;ensembl_phase=2;rank=3 scaffold_1608 . CDS 2552 2905 . - 0 ID=Physo145543;Parent=Physo145543;rank=2 scaffold_1608 . exon 2552 2905 . - . ID=Physo145543.2;Parent=Physo145543;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1608 . CDS 2940 3589 . - 0 ID=Physo145543;Parent=Physo145543;rank=1 scaffold_1608 . exon 2940 3589 . - . ID=Physo145543.1;Parent=Physo145543;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1607 1 3651 scaffold_1607 . repeat_region 675 684 . ? . description=dust scaffold_1607 . repeat_region 1324 2966 . ? . description=dust scaffold_1607 . repeat_region 3027 3073 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1605 1 3652 scaffold_1605 . repeat_region 2 605 . + . description=Sola3-1_PS scaffold_1605 . repeat_region 599 1464 . + . description=Sola3-1_PS scaffold_1605 . repeat_region 1466 2765 . ? . description=dust scaffold_1605 . repeat_region 2766 3451 . + . description=Sola3-1_PS scaffold_1605 . repeat_region 2981 3033 . ? . description=trf scaffold_1605 . repeat_region 2981 3033 . ? . description=dust scaffold_1605 . repeat_region 2993 3023 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1601 1 3654 scaffold_1601 . repeat_region 772 807 . ? . description=trf scaffold_1601 . repeat_region 868 920 . ? . description=trf scaffold_1601 . repeat_region 868 920 . ? . description=trf scaffold_1601 . repeat_region 1093 2564 . ? . description=dust scaffold_1601 . biological_region 3447 3451 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1602 1 3654 scaffold_1602 . repeat_region 1205 2754 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1603 1 3654 scaffold_1603 . repeat_region 292 862 . + . description=GypsyPi-1c_I-int scaffold_1603 . repeat_region 863 2180 . ? . description=dust scaffold_1603 . repeat_region 2183 2666 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1597 1 3655 scaffold_1597 . biological_region 1848 1849 0.999 + . logic_name=eponine scaffold_1597 . repeat_region 2118 2827 . ? . description=dust scaffold_1597 ensembl protein_coding_gene 575 3617 . - . ID=Physo145540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15970001;logic_name=jgi_physo1_1 scaffold_1597 ensembl transcript 575 3617 . - . ID=Physo145540;Parent=Physo145540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1597 . CDS 575 613 . - 0 ID=Physo145540;Parent=Physo145540;rank=4 scaffold_1597 . exon 575 613 . - . ID=Physo145540.4;Parent=Physo145540;constitutive=1;rank=4 scaffold_1597 . CDS 661 1419 . - 0 ID=Physo145540;Parent=Physo145540;rank=3 scaffold_1597 . exon 661 1419 . - . ID=Physo145540.3;Parent=Physo145540;constitutive=1;rank=3 scaffold_1597 . CDS 1742 2090 . - 0 ID=Physo145540;Parent=Physo145540;rank=2 scaffold_1597 . exon 1742 2090 . - . ID=Physo145540.2;Parent=Physo145540;constitutive=1;ensembl_phase=2;rank=2 scaffold_1597 . CDS 2851 3590 . - 0 ID=Physo145540;Parent=Physo145540;rank=1 scaffold_1597 . exon 2851 3617 . - . ID=Physo145540.1;Parent=Physo145540;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1598 1 3655 scaffold_1598 . repeat_region 224 259 . ? . description=trf scaffold_1598 . repeat_region 320 372 . ? . description=trf scaffold_1598 . repeat_region 320 372 . ? . description=trf scaffold_1598 . repeat_region 1732 2770 . ? . description=dust scaffold_1598 ensembl protein_coding_gene 2909 3655 . + . ID=Physo126811;biotype=protein_coding;external_name=estExt_Genewise1.C_15980001;logic_name=jgi_physo1_1 scaffold_1598 ensembl transcript 2909 3655 . + . ID=Physo126811;Parent=Physo126811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1598 . exon 2909 3655 . + . ID=Physo126811.1;Parent=Physo126811;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1598 . CDS 3178 3654 . + 0 ID=Physo126811;Parent=Physo126811;rank=1 scaffold_1598 ensembl protein_coding_gene 468 1731 . + . ID=Physo145541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15980001;logic_name=jgi_physo1_1 scaffold_1598 ensembl transcript 468 1731 . + . ID=Physo145541;Parent=Physo145541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1598 . CDS 468 1107 . + 0 ID=Physo145541;Parent=Physo145541;rank=1 scaffold_1598 . exon 468 1107 . + . ID=Physo145541.1;Parent=Physo145541;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1598 . CDS 1135 1654 . + 0 ID=Physo145541;Parent=Physo145541;rank=2 scaffold_1598 . exon 1135 1654 . + . ID=Physo145541.2;Parent=Physo145541;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1598 . CDS 1674 1731 . + 0 ID=Physo145541;Parent=Physo145541;rank=3 scaffold_1598 . exon 1674 1731 . + . ID=Physo145541.3;Parent=Physo145541;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_1599 1 3656 scaffold_1599 . repeat_region 231 307 . ? . description=trf scaffold_1599 . repeat_region 424 511 . ? . description=trf scaffold_1599 . repeat_region 1280 2774 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1600 1 3656 scaffold_1600 . repeat_region 525 555 . ? . description=trf scaffold_1600 . repeat_region 532 635 . ? . description=trf scaffold_1600 . biological_region 997 1001 0.999 - . logic_name=eponine scaffold_1600 . biological_region 1054 1055 0.999 + . logic_name=eponine scaffold_1600 . repeat_region 1175 2743 . ? . description=dust scaffold_1600 . biological_region 3075 3083 0.999 + . logic_name=eponine scaffold_1600 . biological_region 3096 3104 0.999 + . logic_name=eponine scaffold_1600 . repeat_region 3141 3206 . ? . description=trf scaffold_1600 . biological_region 3145 3149 0.999 + . logic_name=eponine scaffold_1600 . biological_region 3153 3155 0.999 - . logic_name=eponine scaffold_1600 . biological_region 3198 3200 0.999 - . logic_name=eponine scaffold_1600 . biological_region 3209 3210 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1594 1 3660 scaffold_1594 . repeat_region 1010 2665 . ? . description=dust scaffold_1594 . biological_region 3009 3013 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1681 1 3660 scaffold_1681 . repeat_region 620 771 . ? . description=trf scaffold_1681 . repeat_region 740 794 . ? . description=trf scaffold_1681 . repeat_region 869 2382 . ? . description=dust scaffold_1681 . biological_region 2735 2739 0.999 + . logic_name=eponine scaffold_1681 . repeat_region 2803 2857 . ? . description=trf scaffold_1681 . repeat_region 2827 2977 . ? . description=trf scaffold_1681 ensembl protein_coding_gene 2789 3070 . + . ID=Physo126833;biotype=protein_coding;external_name=estExt_Genewise1.C_16810001;logic_name=jgi_physo1_1 scaffold_1681 ensembl transcript 2789 3070 . + . ID=Physo126833;Parent=Physo126833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1681 . CDS 2789 3070 . + 0 ID=Physo126833;Parent=Physo126833;rank=1 scaffold_1681 . exon 2789 3070 . + . ID=Physo126833.1;Parent=Physo126833;constitutive=1;rank=1 scaffold_1681 ensembl protein_coding_gene 515 811 . - . ID=Physo126834;biotype=protein_coding;external_name=estExt_Genewise1.C_16810002;logic_name=jgi_physo1_1 scaffold_1681 ensembl transcript 515 811 . - . ID=Physo126834;Parent=Physo126834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1681 . CDS 515 811 . - 0 ID=Physo126834;Parent=Physo126834;rank=1 scaffold_1681 . exon 515 811 . - . ID=Physo126834.1;Parent=Physo126834;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1596 1 3661 scaffold_1596 . biological_region 1023 1023 0.999 + . logic_name=eponine scaffold_1596 . repeat_region 1411 1428 . ? . description=dust scaffold_1596 . repeat_region 1530 2708 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1595 1 3662 scaffold_1595 . repeat_region 1 1234 . + . description=GypsyPi-1c_I-int scaffold_1595 . biological_region 398 403 0.999 + . logic_name=eponine scaffold_1595 . repeat_region 1268 2441 . ? . description=dust scaffold_1595 . biological_region 2667 2672 0.999 - . logic_name=eponine scaffold_1595 . biological_region 2865 2868 0.999 - . logic_name=eponine scaffold_1595 . repeat_region 3245 3427 . + . description=GypsyPi-1c_LTR scaffold_1595 . repeat_region 3557 3564 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1588 1 3667 scaffold_1588 . biological_region 3065 3066 0.999 - . logic_name=eponine scaffold_1588 . biological_region 3466 3466 0.999 + . logic_name=eponine scaffold_1588 . biological_region 3534 3537 0.999 + . logic_name=eponine scaffold_1588 ensembl protein_coding_gene 1872 2288 . + . ID=Physo126801;biotype=protein_coding;external_name=estExt_Genewise1.C_15880001;logic_name=jgi_physo1_1 scaffold_1588 ensembl transcript 1872 2288 . + . ID=Physo126801;Parent=Physo126801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1588 . exon 1872 2288 . + . ID=Physo126801.1;Parent=Physo126801;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1588 . CDS 1908 2288 . + 0 ID=Physo126801;Parent=Physo126801;rank=1 scaffold_1588 ensembl protein_coding_gene 2701 2991 . + . ID=Physo126802;biotype=protein_coding;external_name=estExt_Genewise1.C_15880002;logic_name=jgi_physo1_1 scaffold_1588 ensembl transcript 2701 2991 . + . ID=Physo126802;Parent=Physo126802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1588 . exon 2701 2991 . + . ID=Physo126802.1;Parent=Physo126802;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1588 . CDS 2794 2991 . + 0 ID=Physo126802;Parent=Physo126802;rank=1 scaffold_1588 ensembl protein_coding_gene 119 556 . + . ID=Physo126803;biotype=protein_coding;external_name=estExt_Genewise1.C_15880003;logic_name=jgi_physo1_1 scaffold_1588 ensembl transcript 119 556 . + . ID=Physo126803;Parent=Physo126803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1588 . exon 119 556 . + . ID=Physo126803.1;Parent=Physo126803;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1588 . CDS 125 556 . + 0 ID=Physo126803;Parent=Physo126803;rank=1 ##gff-version 3 ##sequence-region scaffold_1760 1 3670 scaffold_1760 . repeat_region 11 650 . + . description=GypsyPi-1c_I-int scaffold_1760 . repeat_region 1095 1707 . ? . description=dust scaffold_1760 . biological_region 1921 1925 0.999 - . logic_name=eponine scaffold_1760 . biological_region 2471 2479 0.999 + . logic_name=eponine scaffold_1760 . biological_region 2499 2500 0.999 + . logic_name=eponine scaffold_1760 . biological_region 2569 2572 0.999 - . logic_name=eponine scaffold_1760 . biological_region 2586 2592 0.999 - . logic_name=eponine scaffold_1760 ensembl tRNA_gene 3564 3643 . - . ID=EPrPSOG00000000260;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_1760 ensembl transcript 3564 3643 . - . ID=EPrPSOT00000000260;Parent=EPrPSOG00000000260;biotype=tRNA;logic_name=ncrna_eg scaffold_1760 . exon 3564 3643 . - . ID=EPrPSOE00000000260;Parent=EPrPSOT00000000260;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1589 1 3671 scaffold_1589 . repeat_region 1 56 . ? . description=trf scaffold_1589 . repeat_region 1073 2525 . ? . description=dust scaffold_1589 . biological_region 3416 3416 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1584 1 3673 scaffold_1584 . biological_region 480 481 0.999 + . logic_name=eponine scaffold_1584 . biological_region 939 942 0.999 + . logic_name=eponine scaffold_1584 . repeat_region 1167 2428 . ? . description=dust scaffold_1584 ensembl protein_coding_gene 1 1166 . + . ID=Physo126797;biotype=protein_coding;external_name=estExt_Genewise1.C_15840001;logic_name=jgi_physo1_1 scaffold_1584 ensembl transcript 1 1166 . + . ID=Physo126797;Parent=Physo126797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1584 . exon 1 1166 . + . ID=Physo126797.1;Parent=Physo126797;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1584 . CDS 276 1166 . + 0 ID=Physo126797;Parent=Physo126797;rank=1 ##gff-version 3 ##sequence-region scaffold_1585 1 3674 scaffold_1585 . repeat_region 1110 2735 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1587 1 3674 scaffold_1587 . repeat_region 1011 2411 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1604 1 3675 scaffold_1604 . repeat_region 228 531 . + . description=GypsyPi-1c_LTR scaffold_1604 . repeat_region 532 1082 . + . description=GypsyPi-1c_I-int scaffold_1604 . biological_region 1053 1056 0.999 - . logic_name=eponine scaffold_1604 . repeat_region 1083 2439 . ? . description=dust scaffold_1604 . repeat_region 2440 3673 . + . description=GypsyPi-1c_I-int scaffold_1604 . biological_region 3664 3664 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1582 1 3678 scaffold_1582 . biological_region 259 259 0.999 + . logic_name=eponine scaffold_1582 . repeat_region 907 2387 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1581 1 3680 scaffold_1581 . repeat_region 581 620 . ? . description=trf scaffold_1581 . repeat_region 584 628 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1610 1 3680 scaffold_1610 . repeat_region 1014 2571 . ? . description=dust scaffold_1610 . biological_region 2749 2753 0.999 + . logic_name=eponine scaffold_1610 . biological_region 2778 2784 0.999 - . logic_name=eponine scaffold_1610 . biological_region 3500 3502 0.999 - . logic_name=eponine scaffold_1610 ensembl protein_coding_gene 648 3632 . + . ID=Physo145544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16100001;logic_name=jgi_physo1_1 scaffold_1610 ensembl transcript 648 3632 . + . ID=Physo145544;Parent=Physo145544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1610 . CDS 648 1007 . + 0 ID=Physo145544;Parent=Physo145544;rank=1 scaffold_1610 . exon 648 1007 . + . ID=Physo145544.1;Parent=Physo145544;constitutive=1;rank=1 scaffold_1610 . CDS 2623 2826 . + 0 ID=Physo145544;Parent=Physo145544;rank=2 scaffold_1610 . exon 2623 2826 . + . ID=Physo145544.2;Parent=Physo145544;constitutive=1;rank=2 scaffold_1610 . CDS 2898 3322 . + 0 ID=Physo145544;Parent=Physo145544;rank=3 scaffold_1610 . exon 2898 3322 . + . ID=Physo145544.3;Parent=Physo145544;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1610 . CDS 3367 3631 . + 0 ID=Physo145544;Parent=Physo145544;rank=4 scaffold_1610 . exon 3367 3632 . + . ID=Physo145544.4;Parent=Physo145544;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1645 1 3680 scaffold_1645 . repeat_region 2 524 . + . description=GypsyPi-1c_I-int scaffold_1645 . repeat_region 975 2586 . ? . description=dust scaffold_1645 . repeat_region 3110 3134 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1576 1 3683 scaffold_1576 . repeat_region 1107 2658 . ? . description=dust scaffold_1576 ensembl protein_coding_gene 507 3683 . - . ID=Physo145535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15760001;logic_name=jgi_physo1_1 scaffold_1576 ensembl transcript 507 3683 . - . ID=Physo145535;Parent=Physo145535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1576 . CDS 507 1098 . - 0 ID=Physo145535;Parent=Physo145535;rank=2 scaffold_1576 . exon 507 1098 . - . ID=Physo145535.2;Parent=Physo145535;constitutive=1;ensembl_phase=2;rank=2 scaffold_1576 . CDS 2667 3517 . - 0 ID=Physo145535;Parent=Physo145535;rank=1 scaffold_1576 . exon 2667 3683 . - . ID=Physo145535.1;Parent=Physo145535;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1577 1 3683 scaffold_1577 . repeat_region 5 860 . + . description=GypsyPi-1c_I-int scaffold_1577 . repeat_region 861 2313 . ? . description=dust scaffold_1577 . repeat_region 2315 3678 . + . description=GypsyPi-1c_I-int scaffold_1577 . biological_region 2703 2708 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1580 1 3683 scaffold_1580 . repeat_region 604 798 . - . description=Polinton-1_PI scaffold_1580 . repeat_region 773 893 . - . description=Polinton-1_PI scaffold_1580 . repeat_region 952 1107 . + . description=Polinton-1_PI scaffold_1580 . repeat_region 1116 1508 . ? . description=dust scaffold_1580 . repeat_region 1837 1870 . - . description=Polinton-1_PI scaffold_1580 . repeat_region 2021 2300 . - . description=Polinton-1_PI scaffold_1580 . biological_region 2098 2102 0.999 - . logic_name=eponine scaffold_1580 . repeat_region 3107 3427 . + . description=Polinton-1_PI scaffold_1580 . repeat_region 3410 3655 . + . description=Polinton-1_PI scaffold_1580 ensembl protein_coding_gene 1509 2197 . - . ID=Physo126796;biotype=protein_coding;external_name=estExt_Genewise1.C_15800001;logic_name=jgi_physo1_1 scaffold_1580 ensembl transcript 1509 2197 . - . ID=Physo126796;Parent=Physo126796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1580 . exon 1509 1566 . - . ID=Physo126796.2;Parent=Physo126796;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1580 . CDS 1511 1566 . - 0 ID=Physo126796;Parent=Physo126796;rank=2 scaffold_1580 . CDS 1639 2182 . - 0 ID=Physo126796;Parent=Physo126796;rank=1 scaffold_1580 . exon 1639 2197 . - . ID=Physo126796.1;Parent=Physo126796;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1592 1 3684 scaffold_1592 . repeat_region 889 2458 . ? . description=dust scaffold_1592 ensembl protein_coding_gene 28 3623 . - . ID=Physo145539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15920001;logic_name=jgi_physo1_1 scaffold_1592 ensembl transcript 28 3623 . - . ID=Physo145539;Parent=Physo145539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1592 . exon 28 875 . - . ID=Physo145539.2;Parent=Physo145539;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1592 . CDS 30 875 . - 0 ID=Physo145539;Parent=Physo145539;rank=2 scaffold_1592 . CDS 2489 3400 . - 0 ID=Physo145539;Parent=Physo145539;rank=1 scaffold_1592 . exon 2489 3623 . - . ID=Physo145539.1;Parent=Physo145539;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1618 1 3686 scaffold_1618 . biological_region 19 22 0.999 + . logic_name=eponine scaffold_1618 . biological_region 657 661 0.999 - . logic_name=eponine scaffold_1618 . biological_region 694 698 0.999 - . logic_name=eponine scaffold_1618 . biological_region 713 717 0.999 + . logic_name=eponine scaffold_1618 . biological_region 746 750 0.999 + . logic_name=eponine scaffold_1618 . biological_region 786 786 0.999 - . logic_name=eponine scaffold_1618 . biological_region 843 846 0.999 + . logic_name=eponine scaffold_1618 . biological_region 850 854 0.999 - . logic_name=eponine scaffold_1618 . biological_region 898 902 0.999 - . logic_name=eponine scaffold_1618 . biological_region 905 910 0.999 + . logic_name=eponine scaffold_1618 . biological_region 934 938 0.999 + . logic_name=eponine scaffold_1618 . biological_region 954 960 0.999 + . logic_name=eponine scaffold_1618 . biological_region 981 986 0.999 + . logic_name=eponine scaffold_1618 . repeat_region 1147 2682 . ? . description=dust scaffold_1618 . biological_region 2756 2762 0.999 + . logic_name=eponine scaffold_1618 . biological_region 2791 2797 0.999 - . logic_name=eponine scaffold_1618 . biological_region 2863 2864 0.999 - . logic_name=eponine scaffold_1618 . biological_region 3040 3044 0.999 + . logic_name=eponine scaffold_1618 . biological_region 3303 3308 0.999 + . logic_name=eponine scaffold_1618 . biological_region 3411 3411 0.999 - . logic_name=eponine scaffold_1618 . biological_region 3442 3444 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1572 1 3692 scaffold_1572 . repeat_region 773 829 . ? . description=dust scaffold_1572 . repeat_region 778 826 . ? . description=trf scaffold_1572 . repeat_region 991 2540 . ? . description=dust scaffold_1572 . repeat_region 3442 3450 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1573 1 3692 scaffold_1573 . repeat_region 139 152 . ? . description=dust scaffold_1573 . repeat_region 1377 2842 . ? . description=dust scaffold_1573 ensembl protein_coding_gene 2950 3174 . - . ID=Physo126790;biotype=protein_coding;external_name=estExt_Genewise1.C_15730001;logic_name=jgi_physo1_1 scaffold_1573 ensembl transcript 2950 3174 . - . ID=Physo126790;Parent=Physo126790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1573 . CDS 2950 3174 . - 0 ID=Physo126790;Parent=Physo126790;rank=1 scaffold_1573 . exon 2950 3174 . - . ID=Physo126790.1;Parent=Physo126790;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1571 1 3693 scaffold_1571 . repeat_region 19 740 . - . description=Polinton-1_PI scaffold_1571 . repeat_region 753 2324 . ? . description=dust scaffold_1571 . repeat_region 2342 3601 . - . description=Polinton-1_PI scaffold_1571 ensembl protein_coding_gene 231 434 . - . ID=Physo126789;biotype=protein_coding;external_name=estExt_Genewise1.C_15710001;logic_name=jgi_physo1_1 scaffold_1571 ensembl transcript 231 434 . - . ID=Physo126789;Parent=Physo126789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1571 . CDS 231 281 . - 0 ID=Physo126789;Parent=Physo126789;rank=1 scaffold_1571 . exon 231 434 . - . ID=Physo126789.1;Parent=Physo126789;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1571 ensembl protein_coding_gene 2367 3230 . - . ID=Physo145534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15710001;logic_name=jgi_physo1_1 scaffold_1571 ensembl transcript 2367 3230 . - . ID=Physo145534;Parent=Physo145534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1571 . CDS 2367 3230 . - 0 ID=Physo145534;Parent=Physo145534;rank=1 scaffold_1571 . exon 2367 3230 . - . ID=Physo145534.1;Parent=Physo145534;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1691 1 3698 scaffold_1691 . repeat_region 836 1731 . ? . description=dust scaffold_1691 . repeat_region 3099 3155 . ? . description=trf scaffold_1691 . biological_region 3480 3483 0.999 - . logic_name=eponine scaffold_1691 . repeat_region 3516 3528 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1567 1 3699 scaffold_1567 . repeat_region 1292 2261 . ? . description=dust scaffold_1567 ensembl protein_coding_gene 2891 3677 . + . ID=Physo145533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15670001;logic_name=jgi_physo1_1 scaffold_1567 ensembl transcript 2891 3677 . + . ID=Physo145533;Parent=Physo145533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1567 . CDS 2891 3351 . + 0 ID=Physo145533;Parent=Physo145533;rank=1 scaffold_1567 . exon 2891 3351 . + . ID=Physo145533.1;Parent=Physo145533;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1567 . CDS 3488 3677 . + 0 ID=Physo145533;Parent=Physo145533;rank=2 scaffold_1567 . exon 3488 3677 . + . ID=Physo145533.2;Parent=Physo145533;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1579 1 3700 scaffold_1579 . biological_region 958 961 0.999 + . logic_name=eponine scaffold_1579 . repeat_region 1031 1082 . ? . description=trf scaffold_1579 . biological_region 1162 1162 0.999 - . logic_name=eponine scaffold_1579 . repeat_region 1574 1597 . ? . description=trf scaffold_1579 . repeat_region 1598 2673 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1566 1 3701 scaffold_1566 . repeat_region 1387 2461 . ? . description=dust scaffold_1566 . repeat_region 3461 3589 . + . description=GypsyPi-1c_LTR scaffold_1566 . repeat_region 3590 3652 . + . description=GypsyPi-1c_I-int scaffold_1566 ensembl protein_coding_gene 3 548 . - . ID=Physo126787;biotype=protein_coding;external_name=estExt_Genewise1.C_15660001;logic_name=jgi_physo1_1 scaffold_1566 ensembl transcript 3 548 . - . ID=Physo126787;Parent=Physo126787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1566 . exon 3 548 . - . ID=Physo126787.1;Parent=Physo126787;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1566 . CDS 206 367 . - 0 ID=Physo126787;Parent=Physo126787;rank=1 ##gff-version 3 ##sequence-region scaffold_1564 1 3703 scaffold_1564 . repeat_region 990 2339 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1606 1 3703 scaffold_1606 . repeat_region 751 2385 . ? . description=dust scaffold_1606 . repeat_region 2393 2558 . + . description=GypsyPi-1c_LTR scaffold_1606 . repeat_region 2559 3703 . + . description=GypsyPi-1c_I-int scaffold_1606 . biological_region 2803 2804 0.999 + . logic_name=eponine scaffold_1606 . biological_region 3059 3063 0.999 + . logic_name=eponine scaffold_1606 . biological_region 3080 3081 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1565 1 3706 scaffold_1565 . biological_region 369 372 0.999 + . logic_name=eponine scaffold_1565 . repeat_region 789 2229 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1562 1 3707 scaffold_1562 . biological_region 30 32 0.999 + . logic_name=eponine scaffold_1562 . repeat_region 1212 2703 . ? . description=dust scaffold_1562 . biological_region 2952 2956 0.999 + . logic_name=eponine scaffold_1562 . repeat_region 3328 3359 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1586 1 3707 scaffold_1586 . biological_region 1699 1699 0.999 - . logic_name=eponine scaffold_1586 . repeat_region 1929 2850 . ? . description=dust scaffold_1586 ensembl protein_coding_gene 221 1806 . + . ID=Physo145538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15860001;logic_name=jgi_physo1_1 scaffold_1586 ensembl transcript 221 1806 . + . ID=Physo145538;Parent=Physo145538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1586 . CDS 221 236 . + 0 ID=Physo145538;Parent=Physo145538;rank=1 scaffold_1586 . exon 221 236 . + . ID=Physo145538.1;Parent=Physo145538;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1586 . CDS 331 374 . + 0 ID=Physo145538;Parent=Physo145538;rank=2 scaffold_1586 . exon 331 374 . + . ID=Physo145538.2;Parent=Physo145538;constitutive=1;ensembl_phase=1;rank=2 scaffold_1586 . CDS 461 619 . + 0 ID=Physo145538;Parent=Physo145538;rank=3 scaffold_1586 . exon 461 619 . + . ID=Physo145538.3;Parent=Physo145538;constitutive=1;rank=3 scaffold_1586 . CDS 934 1016 . + 0 ID=Physo145538;Parent=Physo145538;rank=4 scaffold_1586 . exon 934 1016 . + . ID=Physo145538.4;Parent=Physo145538;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1586 . CDS 1099 1489 . + 0 ID=Physo145538;Parent=Physo145538;rank=5 scaffold_1586 . exon 1099 1489 . + . ID=Physo145538.5;Parent=Physo145538;constitutive=1;ensembl_phase=2;rank=5 scaffold_1586 . CDS 1567 1806 . + 0 ID=Physo145538;Parent=Physo145538;rank=6 scaffold_1586 . exon 1567 1806 . + . ID=Physo145538.6;Parent=Physo145538;constitutive=1;rank=6 ##gff-version 3 ##sequence-region scaffold_1561 1 3709 scaffold_1561 . repeat_region 855 885 . ? . description=trf scaffold_1561 . repeat_region 925 977 . ? . description=trf scaffold_1561 . repeat_region 925 977 . ? . description=trf scaffold_1561 . repeat_region 1416 2542 . ? . description=dust scaffold_1561 . biological_region 3427 3431 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1609 1 3713 scaffold_1609 . biological_region 297 304 0.999 - . logic_name=eponine scaffold_1609 . biological_region 663 665 0.999 + . logic_name=eponine scaffold_1609 . biological_region 708 708 0.999 + . logic_name=eponine scaffold_1609 . biological_region 716 720 0.999 + . logic_name=eponine scaffold_1609 . biological_region 727 732 0.999 - . logic_name=eponine scaffold_1609 . biological_region 741 746 0.999 + . logic_name=eponine scaffold_1609 . repeat_region 766 785 . ? . description=trf scaffold_1609 . repeat_region 804 2040 . ? . description=dust scaffold_1609 . repeat_region 2326 2531 . ? . description=trf scaffold_1609 . biological_region 2473 2475 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1690 1 3713 scaffold_1690 . repeat_region 846 1862 . ? . description=dust scaffold_1690 ensembl protein_coding_gene 2374 3578 . + . ID=Physo145556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16900001;logic_name=jgi_physo1_1 scaffold_1690 ensembl transcript 2374 3578 . + . ID=Physo145556;Parent=Physo145556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1690 . CDS 2374 2586 . + 0 ID=Physo145556;Parent=Physo145556;rank=1 scaffold_1690 . exon 2374 2586 . + . ID=Physo145556.1;Parent=Physo145556;constitutive=1;rank=1 scaffold_1690 . CDS 2676 3578 . + 0 ID=Physo145556;Parent=Physo145556;rank=2 scaffold_1690 . exon 2676 3578 . + . ID=Physo145556.2;Parent=Physo145556;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1559 1 3714 scaffold_1559 . biological_region 1734 1736 0.999 + . logic_name=eponine scaffold_1559 . biological_region 1749 1749 0.999 - . logic_name=eponine scaffold_1559 . biological_region 1853 1853 0.999 + . logic_name=eponine scaffold_1559 . repeat_region 2137 2185 . ? . description=trf scaffold_1559 . repeat_region 2198 2844 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1560 1 3715 scaffold_1560 . repeat_region 837 2293 . ? . description=dust scaffold_1560 . biological_region 2534 2535 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1556 1 3716 scaffold_1556 . repeat_region 1144 2352 . ? . description=dust scaffold_1556 ensembl protein_coding_gene 81 219 . + . ID=Physo126785;biotype=protein_coding;external_name=estExt_Genewise1.C_15560001;logic_name=jgi_physo1_1 scaffold_1556 ensembl transcript 81 219 . + . ID=Physo126785;Parent=Physo126785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1556 . exon 81 219 . + . ID=Physo126785.1;Parent=Physo126785;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1556 . CDS 102 185 . + 0 ID=Physo126785;Parent=Physo126785;rank=1 scaffold_1556 ensembl protein_coding_gene 528 983 . - . ID=Physo145532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15560001;logic_name=jgi_physo1_1 scaffold_1556 ensembl transcript 528 983 . - . ID=Physo145532;Parent=Physo145532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1556 . CDS 528 983 . - 0 ID=Physo145532;Parent=Physo145532;rank=1 scaffold_1556 . exon 528 983 . - . ID=Physo145532.1;Parent=Physo145532;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1554 1 3719 scaffold_1554 . repeat_region 1282 2815 . ? . description=dust scaffold_1554 . repeat_region 3621 3646 . ? . description=dust scaffold_1554 . repeat_region 3621 3646 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1551 1 3723 scaffold_1551 . repeat_region 884 2439 . ? . description=dust scaffold_1551 . repeat_region 2492 2538 . ? . description=trf scaffold_1551 . repeat_region 3006 3048 . ? . description=trf scaffold_1551 . repeat_region 3082 3156 . ? . description=trf scaffold_1551 . repeat_region 3082 3157 . ? . description=trf scaffold_1551 . repeat_region 3304 3476 . ? . description=trf scaffold_1551 . repeat_region 3304 3478 . ? . description=trf scaffold_1551 ensembl protein_coding_gene 2867 3478 . - . ID=Physo145531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15510001;logic_name=jgi_physo1_1 scaffold_1551 ensembl transcript 2867 3478 . - . ID=Physo145531;Parent=Physo145531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1551 . exon 2867 3180 . - . ID=Physo145531.2;Parent=Physo145531;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1551 . CDS 3019 3180 . - 0 ID=Physo145531;Parent=Physo145531;rank=2 scaffold_1551 . CDS 3248 3346 . - 0 ID=Physo145531;Parent=Physo145531;rank=1 scaffold_1551 . exon 3248 3478 . - . ID=Physo145531.1;Parent=Physo145531;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1570 1 3723 scaffold_1570 . repeat_region 1 1313 . + . description=Polinton-1_PI scaffold_1570 . repeat_region 1314 2723 . ? . description=dust scaffold_1570 . repeat_region 2753 3513 . + . description=Polinton-1_PI scaffold_1570 . repeat_region 3505 3723 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1550 1 3724 scaffold_1550 . repeat_region 1630 2542 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1708 1 3724 scaffold_1708 . repeat_region 1307 2520 . ? . description=dust scaffold_1708 . repeat_region 2549 2559 . ? . description=dust scaffold_1708 . biological_region 2880 2880 0.999 - . logic_name=eponine scaffold_1708 ensembl protein_coding_gene 128 1301 . + . ID=Physo109755;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_17080001;logic_name=jgi_physo1_1 scaffold_1708 ensembl transcript 128 1301 . + . ID=Physo109755;Parent=Physo109755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1708 . exon 128 1301 . + . ID=Physo109755.1;Parent=Physo109755;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1708 . CDS 168 1145 . + 0 ID=Physo109755;Parent=Physo109755;rank=1 scaffold_1708 ensembl protein_coding_gene 3081 3724 . + . ID=Physo145558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_17080002;logic_name=jgi_physo1_1 scaffold_1708 ensembl transcript 3081 3724 . + . ID=Physo145558;Parent=Physo145558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1708 . CDS 3081 3722 . + 0 ID=Physo145558;Parent=Physo145558;rank=1 scaffold_1708 . exon 3081 3724 . + . ID=Physo145558.1;Parent=Physo145558;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1574 1 3727 scaffold_1574 . repeat_region 1252 2598 . ? . description=dust scaffold_1574 . repeat_region 2618 2641 . ? . description=trf scaffold_1574 . biological_region 3054 3056 0.999 + . logic_name=eponine scaffold_1574 . biological_region 3199 3205 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1547 1 3729 scaffold_1547 . repeat_region 948 2543 . ? . description=dust scaffold_1547 . repeat_region 2742 2846 . ? . description=trf scaffold_1547 . repeat_region 2746 2846 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1623 1 3729 scaffold_1623 . repeat_region 1139 2836 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1545 1 3730 scaffold_1545 . repeat_region 714 1317 . - . description=Gypsy-1-I_PI-int scaffold_1545 . repeat_region 1351 2505 . ? . description=dust scaffold_1545 . repeat_region 2797 2958 . + . description=(ATCG)n scaffold_1545 . repeat_region 2800 2955 . ? . description=trf scaffold_1545 . repeat_region 2809 2936 . ? . description=dust scaffold_1545 . repeat_region 2825 2878 . ? . description=trf scaffold_1545 . biological_region 2969 2974 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1546 1 3730 scaffold_1546 . biological_region 534 537 0.999 + . logic_name=eponine scaffold_1546 . biological_region 751 753 0.999 - . logic_name=eponine scaffold_1546 . biological_region 984 990 0.999 + . logic_name=eponine scaffold_1546 . repeat_region 1131 2466 . ? . description=dust scaffold_1546 . biological_region 3020 3023 0.999 + . logic_name=eponine scaffold_1546 ensembl protein_coding_gene 2573 3618 . + . ID=Physo109753;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_15460001;logic_name=jgi_physo1_1 scaffold_1546 ensembl transcript 2573 3618 . + . ID=Physo109753;Parent=Physo109753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1546 . exon 2573 3618 . + . ID=Physo109753.1;Parent=Physo109753;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1546 . CDS 2620 3618 . + 0 ID=Physo109753;Parent=Physo109753;rank=1 scaffold_1546 ensembl protein_coding_gene 142 1102 . + . ID=Physo145529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15460001;logic_name=jgi_physo1_1 scaffold_1546 ensembl transcript 142 1102 . + . ID=Physo145529;Parent=Physo145529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1546 . exon 142 355 . + . ID=Physo145529.1;Parent=Physo145529;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1546 . CDS 146 355 . + 0 ID=Physo145529;Parent=Physo145529;rank=1 scaffold_1546 . CDS 810 836 . + 0 ID=Physo145529;Parent=Physo145529;rank=2 scaffold_1546 . exon 810 1102 . + . ID=Physo145529.2;Parent=Physo145529;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_1544 1 3733 scaffold_1544 . repeat_region 1040 1090 . ? . description=trf scaffold_1544 . repeat_region 1040 1092 . ? . description=trf scaffold_1544 . repeat_region 1153 1190 . ? . description=trf scaffold_1544 . repeat_region 1522 2768 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1543 1 3735 scaffold_1543 . repeat_region 414 476 . ? . description=trf scaffold_1543 . repeat_region 622 687 . ? . description=trf scaffold_1543 . repeat_region 1250 2555 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1541 1 3736 scaffold_1541 . biological_region 636 637 0.999 + . logic_name=eponine scaffold_1541 . repeat_region 1159 2309 . ? . description=dust scaffold_1541 . repeat_region 2530 2543 . ? . description=dust scaffold_1541 ensembl protein_coding_gene 39 746 . + . ID=Physo145527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15410001;logic_name=jgi_physo1_1 scaffold_1541 ensembl transcript 39 746 . + . ID=Physo145527;Parent=Physo145527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1541 . exon 39 115 . + . ID=Physo145527.1;Parent=Physo145527;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1541 . exon 278 746 . + . ID=Physo145527.2;Parent=Physo145527;constitutive=1;ensembl_phase=-1;rank=2 scaffold_1541 . CDS 525 746 . + 0 ID=Physo145527;Parent=Physo145527;rank=1 ##gff-version 3 ##sequence-region scaffold_1540 1 3738 scaffold_1540 . repeat_region 854 2240 . ? . description=dust scaffold_1540 ensembl protein_coding_gene 146 535 . + . ID=Physo126769;biotype=protein_coding;external_name=estExt_Genewise1.C_15400001;logic_name=jgi_physo1_1 scaffold_1540 ensembl transcript 146 535 . + . ID=Physo126769;Parent=Physo126769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1540 . exon 146 535 . + . ID=Physo126769.1;Parent=Physo126769;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1540 . CDS 152 535 . + 0 ID=Physo126769;Parent=Physo126769;rank=1 scaffold_1540 ensembl protein_coding_gene 670 851 . + . ID=Physo126772;biotype=protein_coding;external_name=estExt_Genewise1.C_15400004;logic_name=jgi_physo1_1 scaffold_1540 ensembl transcript 670 851 . + . ID=Physo126772;Parent=Physo126772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1540 . exon 670 851 . + . ID=Physo126772.1;Parent=Physo126772;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1540 . CDS 672 851 . + 0 ID=Physo126772;Parent=Physo126772;rank=1 ##gff-version 3 ##sequence-region scaffold_1534 1 3739 scaffold_1534 . repeat_region 946 1848 . ? . description=dust scaffold_1534 . repeat_region 3032 3057 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1539 1 3739 scaffold_1539 . repeat_region 1 309 . + . description=Polinton-1_PI scaffold_1539 . repeat_region 348 385 . ? . description=dust scaffold_1539 . repeat_region 1147 2442 . ? . description=dust scaffold_1539 . repeat_region 2449 3285 . + . description=Polinton-1_PI scaffold_1539 . repeat_region 3102 3109 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1621 1 3740 scaffold_1621 . repeat_region 1066 2707 . ? . description=dust scaffold_1621 . biological_region 3036 3040 0.999 + . logic_name=eponine scaffold_1621 . biological_region 3094 3097 0.999 + . logic_name=eponine scaffold_1621 . biological_region 3107 3117 0.999 - . logic_name=eponine scaffold_1621 . repeat_region 3135 3142 . ? . description=dust scaffold_1621 . biological_region 3162 3163 0.999 - . logic_name=eponine scaffold_1621 . repeat_region 3461 3491 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1535 1 3741 scaffold_1535 . repeat_region 608 615 . ? . description=dust scaffold_1535 . repeat_region 1236 2725 . ? . description=dust scaffold_1535 . biological_region 2775 2779 0.999 + . logic_name=eponine scaffold_1535 . biological_region 2827 2830 0.999 + . logic_name=eponine scaffold_1535 . repeat_region 2869 2929 . ? . description=trf scaffold_1535 . biological_region 3736 3739 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1533 1 3743 scaffold_1533 . biological_region 643 645 0.999 - . logic_name=eponine scaffold_1533 . repeat_region 1316 2967 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1532 1 3744 scaffold_1532 . repeat_region 1225 2396 . ? . description=dust scaffold_1532 ensembl protein_coding_gene 2515 2886 . - . ID=Physo126766;biotype=protein_coding;external_name=estExt_Genewise1.C_15320001;logic_name=jgi_physo1_1 scaffold_1532 ensembl transcript 2515 2886 . - . ID=Physo126766;Parent=Physo126766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1532 . CDS 2515 2589 . - 0 ID=Physo126766;Parent=Physo126766;rank=1 scaffold_1532 . exon 2515 2886 . - . ID=Physo126766.1;Parent=Physo126766;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1532 ensembl protein_coding_gene 3021 3287 . - . ID=Physo126767;biotype=protein_coding;external_name=estExt_Genewise1.C_15320002;logic_name=jgi_physo1_1 scaffold_1532 ensembl transcript 3021 3287 . - . ID=Physo126767;Parent=Physo126767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1532 . exon 3021 3287 . - . ID=Physo126767.1;Parent=Physo126767;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1532 . CDS 3122 3250 . - 0 ID=Physo126767;Parent=Physo126767;rank=1 scaffold_1532 ensembl protein_coding_gene 883 1224 . - . ID=Physo126768;biotype=protein_coding;external_name=estExt_Genewise1.C_15320003;logic_name=jgi_physo1_1 scaffold_1532 ensembl transcript 883 1224 . - . ID=Physo126768;Parent=Physo126768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1532 . CDS 883 1188 . - 0 ID=Physo126768;Parent=Physo126768;rank=1 scaffold_1532 . exon 883 1224 . - . ID=Physo126768.1;Parent=Physo126768;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1536 1 3745 scaffold_1536 . repeat_region 386 436 . ? . description=trf scaffold_1536 . biological_region 538 544 0.999 + . logic_name=eponine scaffold_1536 . biological_region 594 594 0.999 - . logic_name=eponine scaffold_1536 . repeat_region 986 2668 . ? . description=dust scaffold_1536 . repeat_region 3534 3560 . ? . description=trf scaffold_1536 . biological_region 3608 3613 0.999 + . logic_name=eponine scaffold_1536 . biological_region 3709 3715 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1527 1 3746 scaffold_1527 . repeat_region 5 1345 . - . description=GypsyPi-1c_I-int scaffold_1527 . repeat_region 1347 2975 . ? . description=dust scaffold_1527 . repeat_region 2976 3690 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1528 1 3747 scaffold_1528 . repeat_region 1301 2648 . ? . description=dust scaffold_1528 . biological_region 2808 2810 0.999 - . logic_name=eponine scaffold_1528 ensembl protein_coding_gene 2650 2772 . - . ID=Physo126764;biotype=protein_coding;external_name=estExt_Genewise1.C_15280001;logic_name=jgi_physo1_1 scaffold_1528 ensembl transcript 2650 2772 . - . ID=Physo126764;Parent=Physo126764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1528 . CDS 2650 2772 . - 0 ID=Physo126764;Parent=Physo126764;rank=1 scaffold_1528 . exon 2650 2772 . - . ID=Physo126764.1;Parent=Physo126764;constitutive=1;rank=1 scaffold_1528 ensembl protein_coding_gene 1 1108 . + . ID=Physo145526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15280001;logic_name=jgi_physo1_1 scaffold_1528 ensembl transcript 1 1108 . + . ID=Physo145526;Parent=Physo145526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1528 . CDS 1 7 . + 0 ID=Physo145526;Parent=Physo145526;rank=1 scaffold_1528 . exon 1 7 . + . ID=Physo145526.1;Parent=Physo145526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1528 . CDS 94 875 . + 0 ID=Physo145526;Parent=Physo145526;rank=2 scaffold_1528 . exon 94 1108 . + . ID=Physo145526.2;Parent=Physo145526;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1529 1 3748 scaffold_1529 . repeat_region 4 374 . - . description=GypsyPi-1c_I-int scaffold_1529 . repeat_region 375 680 . - . description=GypsyPi-1c_LTR scaffold_1529 . repeat_region 960 2548 . ? . description=dust scaffold_1529 . biological_region 3619 3624 0.999 + . logic_name=eponine scaffold_1529 . repeat_region 3637 3660 . ? . description=trf scaffold_1529 ensembl protein_coding_gene 3410 3520 . + . ID=Physo126765;biotype=protein_coding;external_name=estExt_Genewise1.C_15290001;logic_name=jgi_physo1_1 scaffold_1529 ensembl transcript 3410 3520 . + . ID=Physo126765;Parent=Physo126765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1529 . exon 3410 3520 . + . ID=Physo126765.1;Parent=Physo126765;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1529 . CDS 3423 3518 . + 0 ID=Physo126765;Parent=Physo126765;rank=1 ##gff-version 3 ##sequence-region scaffold_1563 1 3749 scaffold_1563 . repeat_region 803 2379 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1508 1 3750 scaffold_1508 . repeat_region 1298 2619 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1526 1 3752 scaffold_1526 . repeat_region 873 2425 . ? . description=dust scaffold_1526 . repeat_region 2809 2859 . ? . description=trf scaffold_1526 . repeat_region 2809 2861 . ? . description=trf scaffold_1526 . repeat_region 2922 2959 . ? . description=trf scaffold_1526 ensembl protein_coding_gene 1 751 . - . ID=Physo145525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15260001;logic_name=jgi_physo1_1 scaffold_1526 ensembl transcript 1 751 . - . ID=Physo145525;Parent=Physo145525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1526 . exon 1 751 . - . ID=Physo145525.1;Parent=Physo145525;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1526 . CDS 2 751 . - 0 ID=Physo145525;Parent=Physo145525;rank=1 ##gff-version 3 ##sequence-region scaffold_1525 1 3753 scaffold_1525 . biological_region 748 748 0.999 - . logic_name=eponine scaffold_1525 . biological_region 970 974 0.999 + . logic_name=eponine scaffold_1525 . repeat_region 1201 2305 . ? . description=dust scaffold_1525 . repeat_region 2801 2851 . ? . description=trf scaffold_1525 . repeat_region 2801 2853 . ? . description=trf scaffold_1525 . repeat_region 2893 2937 . ? . description=trf scaffold_1525 . repeat_region 2942 2979 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1524 1 3755 scaffold_1524 . repeat_region 2321 2329 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1521 1 3757 scaffold_1521 . repeat_region 98 149 . ? . description=dust scaffold_1521 . biological_region 626 630 0.999 - . logic_name=eponine scaffold_1521 . repeat_region 1151 2646 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1522 1 3758 scaffold_1522 . repeat_region 1044 2281 . ? . description=dust scaffold_1522 . repeat_region 3082 3089 . ? . description=dust scaffold_1522 . repeat_region 3483 3490 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1638 1 3760 scaffold_1638 . repeat_region 194 202 . ? . description=dust scaffold_1638 . repeat_region 1501 2933 . ? . description=dust scaffold_1638 . repeat_region 3744 3753 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1520 1 3761 scaffold_1520 . repeat_region 1199 2569 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1557 1 3763 scaffold_1557 . repeat_region 84 384 . + . description=Polinton-1_PI scaffold_1557 . repeat_region 341 348 . ? . description=dust scaffold_1557 . repeat_region 367 1053 . + . description=Polinton-1_PI scaffold_1557 . repeat_region 1055 2731 . ? . description=dust scaffold_1557 . repeat_region 2732 3763 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1515 1 3764 scaffold_1515 . biological_region 116 118 0.999 - . logic_name=eponine scaffold_1515 . biological_region 200 200 0.999 + . logic_name=eponine scaffold_1515 . repeat_region 1307 2816 . ? . description=dust scaffold_1515 . repeat_region 2924 3020 . ? . description=trf scaffold_1515 ensembl protein_coding_gene 1080 1304 . + . ID=Physo126757;biotype=protein_coding;external_name=estExt_Genewise1.C_15150002;logic_name=jgi_physo1_1 scaffold_1515 ensembl transcript 1080 1304 . + . ID=Physo126757;Parent=Physo126757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1515 . exon 1080 1304 . + . ID=Physo126757.1;Parent=Physo126757;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1515 . CDS 1082 1303 . + 0 ID=Physo126757;Parent=Physo126757;rank=1 scaffold_1515 ensembl protein_coding_gene 1 541 . + . ID=Physo145524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15150001;logic_name=jgi_physo1_1 scaffold_1515 ensembl transcript 1 541 . + . ID=Physo145524;Parent=Physo145524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1515 . exon 1 541 . + . ID=Physo145524.1;Parent=Physo145524;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1515 . CDS 3 482 . + 0 ID=Physo145524;Parent=Physo145524;rank=1 ##gff-version 3 ##sequence-region scaffold_1514 1 3765 scaffold_1514 . repeat_region 1021 2076 . ? . description=dust scaffold_1514 . biological_region 3004 3004 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1517 1 3765 scaffold_1517 . repeat_region 1123 2353 . ? . description=dust scaffold_1517 . repeat_region 2609 2616 . ? . description=dust scaffold_1517 . repeat_region 2681 2690 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1512 1 3766 scaffold_1512 . repeat_region 373 396 . ? . description=trf scaffold_1512 . biological_region 446 451 0.999 + . logic_name=eponine scaffold_1512 . biological_region 471 475 0.999 - . logic_name=eponine scaffold_1512 . biological_region 918 922 0.999 + . logic_name=eponine scaffold_1512 . biological_region 1514 1518 0.999 + . logic_name=eponine scaffold_1512 . biological_region 1538 1543 0.999 - . logic_name=eponine scaffold_1512 . repeat_region 1592 1615 . ? . description=trf scaffold_1512 . repeat_region 1655 2475 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1516 1 3767 scaffold_1516 . repeat_region 637 645 . ? . description=dust scaffold_1516 . biological_region 1295 1302 0.999 - . logic_name=eponine scaffold_1516 . biological_region 1352 1355 0.999 + . logic_name=eponine scaffold_1516 . repeat_region 1475 2723 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1511 1 3770 scaffold_1511 . repeat_region 1273 3004 . ? . description=dust scaffold_1511 ensembl protein_coding_gene 232 1194 . - . ID=Physo145523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15110001;logic_name=jgi_physo1_1 scaffold_1511 ensembl transcript 232 1194 . - . ID=Physo145523;Parent=Physo145523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1511 . CDS 232 1194 . - 0 ID=Physo145523;Parent=Physo145523;rank=1 scaffold_1511 . exon 232 1194 . - . ID=Physo145523.1;Parent=Physo145523;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1510 1 3771 scaffold_1510 . repeat_region 1379 2853 . ? . description=dust scaffold_1510 ensembl protein_coding_gene 771 1175 . - . ID=Physo126754;biotype=protein_coding;external_name=estExt_Genewise1.C_15100001;logic_name=jgi_physo1_1 scaffold_1510 ensembl transcript 771 1175 . - . ID=Physo126754;Parent=Physo126754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1510 . CDS 771 911 . - 0 ID=Physo126754;Parent=Physo126754;rank=1 scaffold_1510 . exon 771 1175 . - . ID=Physo126754.1;Parent=Physo126754;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1509 1 3772 scaffold_1509 . biological_region 524 528 0.999 + . logic_name=eponine scaffold_1509 . repeat_region 598 622 . ? . description=trf scaffold_1509 . repeat_region 977 2715 . ? . description=dust scaffold_1509 . repeat_region 3390 3397 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1507 1 3774 scaffold_1507 . biological_region 62 64 0.999 + . logic_name=eponine scaffold_1507 . biological_region 181 183 0.999 + . logic_name=eponine scaffold_1507 . biological_region 204 209 0.999 + . logic_name=eponine scaffold_1507 . biological_region 238 244 0.999 - . logic_name=eponine scaffold_1507 . biological_region 258 266 0.999 - . logic_name=eponine scaffold_1507 . biological_region 317 317 0.999 + . logic_name=eponine scaffold_1507 . biological_region 353 354 0.999 + . logic_name=eponine scaffold_1507 . biological_region 406 410 0.999 - . logic_name=eponine scaffold_1507 . biological_region 503 506 0.999 + . logic_name=eponine scaffold_1507 . biological_region 538 538 0.999 - . logic_name=eponine scaffold_1507 . biological_region 574 578 0.999 - . logic_name=eponine scaffold_1507 . biological_region 652 655 0.999 + . logic_name=eponine scaffold_1507 . biological_region 657 661 0.999 - . logic_name=eponine scaffold_1507 . repeat_region 1200 1505 . - . description=GypsyPi-1c_LTR scaffold_1507 . repeat_region 1659 2732 . ? . description=dust scaffold_1507 . repeat_region 3400 3477 . - . description=GypsyPi-1c_I-int scaffold_1507 ensembl protein_coding_gene 90 907 . - . ID=Physo145522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15070001;logic_name=jgi_physo1_1 scaffold_1507 ensembl transcript 90 907 . - . ID=Physo145522;Parent=Physo145522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1507 . CDS 90 487 . - 0 ID=Physo145522;Parent=Physo145522;rank=2 scaffold_1507 . exon 90 487 . - . ID=Physo145522.2;Parent=Physo145522;constitutive=1;ensembl_phase=1;rank=2 scaffold_1507 . CDS 664 907 . - 0 ID=Physo145522;Parent=Physo145522;rank=1 scaffold_1507 . exon 664 907 . - . ID=Physo145522.1;Parent=Physo145522;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1513 1 3775 scaffold_1513 . repeat_region 1389 2785 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1504 1 3778 scaffold_1504 . biological_region 482 484 0.999 + . logic_name=eponine scaffold_1504 . repeat_region 1111 2582 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1505 1 3778 scaffold_1505 . repeat_region 888 1191 . - . description=GypsyPi-1c_LTR scaffold_1505 . repeat_region 1192 1428 . - . description=GypsyPi-1c_I-int scaffold_1505 . repeat_region 1434 1946 . ? . description=dust scaffold_1505 . repeat_region 1947 3778 . - . description=GypsyPi-1c_I-int scaffold_1505 . biological_region 2551 2556 0.999 - . logic_name=eponine scaffold_1505 . biological_region 2602 2605 0.999 - . logic_name=eponine scaffold_1505 . biological_region 3285 3289 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1503 1 3780 scaffold_1503 . biological_region 609 611 0.999 - . logic_name=eponine scaffold_1503 . repeat_region 3654 3673 . ? . description=trf scaffold_1503 . biological_region 3719 3724 0.999 - . logic_name=eponine scaffold_1503 . biological_region 3757 3759 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_494 1 3782 scaffold_494 . biological_region 2274 2276 0.999 - . logic_name=eponine scaffold_494 . repeat_region 2465 2506 . ? . description=dust scaffold_494 . repeat_region 2987 3036 . ? . description=dust scaffold_494 ensembl protein_coding_gene 1 2069 . - . ID=Physo145115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4940001;logic_name=jgi_physo1_1 scaffold_494 ensembl transcript 1 2069 . - . ID=Physo145115;Parent=Physo145115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_494 . exon 1 646 . - . ID=Physo145115.4;Parent=Physo145115;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_494 . CDS 384 646 . - 0 ID=Physo145115;Parent=Physo145115;rank=4 scaffold_494 . CDS 683 817 . - 0 ID=Physo145115;Parent=Physo145115;rank=3 scaffold_494 . exon 683 817 . - . ID=Physo145115.3;Parent=Physo145115;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_494 . CDS 1026 1629 . - 0 ID=Physo145115;Parent=Physo145115;rank=2 scaffold_494 . exon 1026 1629 . - . ID=Physo145115.2;Parent=Physo145115;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_494 . CDS 2025 2069 . - 0 ID=Physo145115;Parent=Physo145115;rank=1 scaffold_494 . exon 2025 2069 . - . ID=Physo145115.1;Parent=Physo145115;constitutive=1;rank=1 scaffold_494 ensembl protein_coding_gene 3050 3700 . - . ID=Physo145116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4940002;logic_name=jgi_physo1_1 scaffold_494 ensembl transcript 3050 3700 . - . ID=Physo145116;Parent=Physo145116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_494 . CDS 3050 3700 . - 0 ID=Physo145116;Parent=Physo145116;rank=1 scaffold_494 . exon 3050 3700 . - . ID=Physo145116.1;Parent=Physo145116;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1500 1 3787 scaffold_1500 . repeat_region 1037 2695 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1498 1 3788 scaffold_1498 . repeat_region 1155 2616 . ? . description=dust scaffold_1498 . repeat_region 3495 3515 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1496 1 3792 scaffold_1496 . repeat_region 1613 3046 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1495 1 3793 scaffold_1495 . repeat_region 29 330 . - . description=GypsyPi-1c_LTR scaffold_1495 . repeat_region 331 653 . - . description=GypsyPi-1c_I-int scaffold_1495 . biological_region 779 785 0.999 + . logic_name=eponine scaffold_1495 . biological_region 1133 1134 0.999 + . logic_name=eponine scaffold_1495 . repeat_region 1239 2185 . ? . description=dust scaffold_1495 . repeat_region 2191 3793 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1497 1 3793 scaffold_1497 . repeat_region 927 2688 . ? . description=dust scaffold_1497 ensembl protein_coding_gene 38 532 . + . ID=Physo145520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14970001;logic_name=jgi_physo1_1 scaffold_1497 ensembl transcript 38 532 . + . ID=Physo145520;Parent=Physo145520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1497 . CDS 38 532 . + 0 ID=Physo145520;Parent=Physo145520;rank=1 scaffold_1497 . exon 38 532 . + . ID=Physo145520.1;Parent=Physo145520;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1220 1 3794 scaffold_1220 . biological_region 92 97 0.999 - . logic_name=eponine scaffold_1220 . repeat_region 1413 2891 . ? . description=dust scaffold_1220 . repeat_region 3188 3253 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1558 1 3795 scaffold_1558 . repeat_region 1072 2825 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1493 1 3797 scaffold_1493 . repeat_region 11 939 . + . description=Polinton-1_PI scaffold_1493 . repeat_region 945 2236 . ? . description=dust scaffold_1493 . repeat_region 2240 3797 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1494 1 3800 scaffold_1494 . repeat_region 1405 2842 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1523 1 3803 scaffold_1523 . repeat_region 360 383 . ? . description=dust scaffold_1523 . repeat_region 1258 2976 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1492 1 3807 scaffold_1492 . biological_region 473 476 0.999 + . logic_name=eponine scaffold_1492 . repeat_region 660 667 . ? . description=dust scaffold_1492 . repeat_region 945 983 . ? . description=trf scaffold_1492 . biological_region 1060 1063 0.999 + . logic_name=eponine scaffold_1492 . biological_region 1066 1068 0.999 - . logic_name=eponine scaffold_1492 . repeat_region 1148 2813 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1490 1 3810 scaffold_1490 . repeat_region 1057 2426 . ? . description=dust scaffold_1490 . repeat_region 2427 3797 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1489 1 3813 scaffold_1489 . repeat_region 1572 2611 . ? . description=dust scaffold_1489 . repeat_region 3189 3196 . ? . description=dust scaffold_1489 . repeat_region 3240 3813 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1553 1 3817 scaffold_1553 . repeat_region 761 2415 . ? . description=dust scaffold_1553 . biological_region 3572 3575 0.999 - . logic_name=eponine scaffold_1553 ensembl protein_coding_gene 3499 3764 . + . ID=Physo126783;biotype=protein_coding;external_name=estExt_Genewise1.C_15530001;logic_name=jgi_physo1_1 scaffold_1553 ensembl transcript 3499 3764 . + . ID=Physo126783;Parent=Physo126783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1553 . CDS 3499 3663 . + 0 ID=Physo126783;Parent=Physo126783;rank=1 scaffold_1553 . exon 3499 3764 . + . ID=Physo126783.1;Parent=Physo126783;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1488 1 3818 scaffold_1488 . repeat_region 1718 2406 . ? . description=dust scaffold_1488 . repeat_region 2431 2490 . ? . description=trf scaffold_1488 . biological_region 2503 2506 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1537 1 3819 scaffold_1537 . repeat_region 1159 2921 . ? . description=dust scaffold_1537 . repeat_region 3760 3780 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1486 1 3822 scaffold_1486 . repeat_region 1015 2664 . ? . description=dust scaffold_1486 . biological_region 3215 3216 0.999 - . logic_name=eponine scaffold_1486 . biological_region 3238 3241 0.999 + . logic_name=eponine scaffold_1486 . biological_region 3354 3361 0.999 - . logic_name=eponine scaffold_1486 ensembl protein_coding_gene 2893 3548 . + . ID=Physo145519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14860001;logic_name=jgi_physo1_1 scaffold_1486 ensembl transcript 2893 3548 . + . ID=Physo145519;Parent=Physo145519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1486 . CDS 2893 3447 . + 0 ID=Physo145519;Parent=Physo145519;rank=1 scaffold_1486 . exon 2893 3548 . + . ID=Physo145519.1;Parent=Physo145519;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1487 1 3823 scaffold_1487 . repeat_region 1151 1859 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1483 1 3825 scaffold_1483 . repeat_region 98 190 . ? . description=dust scaffold_1483 . repeat_region 1262 2524 . ? . description=dust scaffold_1483 ensembl protein_coding_gene 3242 3565 . + . ID=Physo126747;biotype=protein_coding;external_name=estExt_Genewise1.C_14830002;logic_name=jgi_physo1_1 scaffold_1483 ensembl transcript 3242 3565 . + . ID=Physo126747;Parent=Physo126747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1483 . exon 3242 3565 . + . ID=Physo126747.1;Parent=Physo126747;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1483 . CDS 3290 3565 . + 0 ID=Physo126747;Parent=Physo126747;rank=1 scaffold_1483 ensembl protein_coding_gene 337 795 . + . ID=Physo145518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14830001;logic_name=jgi_physo1_1 scaffold_1483 ensembl transcript 337 795 . + . ID=Physo145518;Parent=Physo145518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1483 . CDS 337 795 . + 0 ID=Physo145518;Parent=Physo145518;rank=1 scaffold_1483 . exon 337 795 . + . ID=Physo145518.1;Parent=Physo145518;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1484 1 3825 scaffold_1484 . repeat_region 1323 2648 . ? . description=dust scaffold_1484 . repeat_region 2672 2769 . ? . description=trf scaffold_1484 . repeat_region 2735 2789 . ? . description=trf scaffold_1484 . repeat_region 2769 2824 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1519 1 3833 scaffold_1519 . repeat_region 1139 2584 . ? . description=dust scaffold_1519 . biological_region 3024 3026 0.999 + . logic_name=eponine scaffold_1519 . biological_region 3383 3386 0.999 + . logic_name=eponine scaffold_1519 . biological_region 3452 3455 0.999 + . logic_name=eponine scaffold_1519 . biological_region 3479 3481 0.999 - . logic_name=eponine scaffold_1519 . biological_region 3517 3521 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1472 1 3842 scaffold_1472 . biological_region 1001 1008 0.999 + . logic_name=eponine scaffold_1472 . biological_region 1071 1075 0.999 - . logic_name=eponine scaffold_1472 . biological_region 1078 1080 0.999 + . logic_name=eponine scaffold_1472 . biological_region 1092 1097 0.999 - . logic_name=eponine scaffold_1472 . repeat_region 1744 2933 . ? . description=dust scaffold_1472 . biological_region 3293 3297 0.999 + . logic_name=eponine scaffold_1472 . biological_region 3371 3377 0.999 + . logic_name=eponine scaffold_1472 . biological_region 3393 3398 0.999 + . logic_name=eponine scaffold_1472 . repeat_region 3399 3433 . ? . description=dust scaffold_1472 . repeat_region 3403 3433 . ? . description=trf scaffold_1472 . biological_region 3430 3433 0.999 - . logic_name=eponine scaffold_1472 . biological_region 3592 3596 0.999 - . logic_name=eponine scaffold_1472 ensembl protein_coding_gene 4 401 . + . ID=Physo145515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14720001;logic_name=jgi_physo1_1 scaffold_1472 ensembl transcript 4 401 . + . ID=Physo145515;Parent=Physo145515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1472 . exon 4 401 . + . ID=Physo145515.1;Parent=Physo145515;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1472 . CDS 12 317 . + 0 ID=Physo145515;Parent=Physo145515;rank=1 scaffold_1472 ensembl protein_coding_gene 711 1743 . - . ID=Physo145516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14720002;logic_name=jgi_physo1_1 scaffold_1472 ensembl transcript 711 1743 . - . ID=Physo145516;Parent=Physo145516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1472 . exon 711 1743 . - . ID=Physo145516.1;Parent=Physo145516;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1472 . CDS 913 1569 . - 0 ID=Physo145516;Parent=Physo145516;rank=1 ##gff-version 3 ##sequence-region scaffold_1477 1 3842 scaffold_1477 . repeat_region 1127 2772 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1501 1 3844 scaffold_1501 . repeat_region 909 2380 . ? . description=dust scaffold_1501 . biological_region 2979 2979 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1475 1 3845 scaffold_1475 . repeat_region 1274 2547 . ? . description=dust scaffold_1475 . biological_region 2987 2990 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1530 1 3845 scaffold_1530 . repeat_region 1309 2790 . ? . description=dust scaffold_1530 . biological_region 3176 3181 0.999 - . logic_name=eponine scaffold_1530 . repeat_region 3212 3223 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1474 1 3847 scaffold_1474 . repeat_region 1237 3074 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1471 1 3849 scaffold_1471 . repeat_region 1 1195 . ? . description=trf scaffold_1471 . biological_region 84 88 0.999 - . logic_name=eponine scaffold_1471 . biological_region 115 115 0.999 - . logic_name=eponine scaffold_1471 . biological_region 132 135 0.999 - . logic_name=eponine scaffold_1471 . biological_region 159 165 0.999 - . logic_name=eponine scaffold_1471 . biological_region 188 194 0.999 - . logic_name=eponine scaffold_1471 . biological_region 219 220 0.999 - . logic_name=eponine scaffold_1471 . biological_region 237 240 0.999 - . logic_name=eponine scaffold_1471 . biological_region 264 270 0.999 - . logic_name=eponine scaffold_1471 . biological_region 293 299 0.999 - . logic_name=eponine scaffold_1471 . biological_region 324 325 0.999 - . logic_name=eponine scaffold_1471 . biological_region 342 345 0.999 - . logic_name=eponine scaffold_1471 . biological_region 369 375 0.999 - . logic_name=eponine scaffold_1471 . biological_region 398 404 0.999 - . logic_name=eponine scaffold_1471 . biological_region 429 430 0.999 - . logic_name=eponine scaffold_1471 . biological_region 446 452 0.999 - . logic_name=eponine scaffold_1471 . biological_region 474 480 0.999 - . logic_name=eponine scaffold_1471 . biological_region 503 509 0.999 - . logic_name=eponine scaffold_1471 . biological_region 534 535 0.999 - . logic_name=eponine scaffold_1471 . biological_region 552 555 0.999 - . logic_name=eponine scaffold_1471 . biological_region 579 585 0.999 - . logic_name=eponine scaffold_1471 . biological_region 608 614 0.999 - . logic_name=eponine scaffold_1471 . biological_region 639 640 0.999 - . logic_name=eponine scaffold_1471 . biological_region 657 660 0.999 - . logic_name=eponine scaffold_1471 . biological_region 684 690 0.999 - . logic_name=eponine scaffold_1471 . biological_region 713 719 0.999 - . logic_name=eponine scaffold_1471 . biological_region 744 745 0.999 - . logic_name=eponine scaffold_1471 . biological_region 761 767 0.999 - . logic_name=eponine scaffold_1471 . biological_region 789 795 0.999 - . logic_name=eponine scaffold_1471 . biological_region 818 824 0.999 - . logic_name=eponine scaffold_1471 . biological_region 849 850 0.999 - . logic_name=eponine scaffold_1471 . biological_region 867 870 0.999 - . logic_name=eponine scaffold_1471 . biological_region 894 900 0.999 - . logic_name=eponine scaffold_1471 . biological_region 923 929 0.999 - . logic_name=eponine scaffold_1471 . biological_region 954 955 0.999 - . logic_name=eponine scaffold_1471 . biological_region 972 975 0.999 - . logic_name=eponine scaffold_1471 . biological_region 999 1005 0.999 - . logic_name=eponine scaffold_1471 . biological_region 1028 1034 0.999 - . logic_name=eponine scaffold_1471 . biological_region 1059 1060 0.999 - . logic_name=eponine scaffold_1471 . biological_region 1077 1080 0.999 - . logic_name=eponine scaffold_1471 . biological_region 1104 1110 0.999 - . logic_name=eponine scaffold_1471 . biological_region 1133 1139 0.999 - . logic_name=eponine scaffold_1471 . repeat_region 1196 2997 . ? . description=dust scaffold_1471 ensembl protein_coding_gene 217 1134 . + . ID=Physo126741;biotype=protein_coding;external_name=estExt_Genewise1.C_14710002;logic_name=jgi_physo1_1 scaffold_1471 ensembl transcript 217 1134 . + . ID=Physo126741;Parent=Physo126741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1471 . CDS 217 1134 . + 0 ID=Physo126741;Parent=Physo126741;rank=1 scaffold_1471 . exon 217 1134 . + . ID=Physo126741.1;Parent=Physo126741;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1473 1 3849 scaffold_1473 . repeat_region 36 83 . ? . description=trf scaffold_1473 . repeat_region 788 825 . ? . description=trf scaffold_1473 . biological_region 1043 1045 0.999 - . logic_name=eponine scaffold_1473 . repeat_region 1154 2674 . ? . description=dust scaffold_1473 . biological_region 3042 3046 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1470 1 3850 scaffold_1470 . repeat_region 977 2238 . ? . description=dust scaffold_1470 . repeat_region 3235 3291 . ? . description=trf scaffold_1470 . repeat_region 3248 3291 . ? . description=trf scaffold_1470 ensembl tRNA_gene 759 839 . + . ID=EPrPSOG00000000261;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_1470 ensembl transcript 759 839 . + . ID=EPrPSOT00000000261;Parent=EPrPSOG00000000261;biotype=tRNA;logic_name=ncrna_eg scaffold_1470 . exon 759 839 . + . ID=EPrPSOE00000000261;Parent=EPrPSOT00000000261;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1481 1 3850 scaffold_1481 . repeat_region 1387 2587 . ? . description=dust scaffold_1481 ensembl protein_coding_gene 1 1386 . - . ID=Physo145517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14810001;logic_name=jgi_physo1_1 scaffold_1481 ensembl transcript 1 1386 . - . ID=Physo145517;Parent=Physo145517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1481 . exon 1 1386 . - . ID=Physo145517.1;Parent=Physo145517;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1481 . CDS 231 1328 . - 0 ID=Physo145517;Parent=Physo145517;rank=1 ##gff-version 3 ##sequence-region scaffold_1467 1 3852 scaffold_1467 . repeat_region 1 999 . - . description=Gypsy-2-I_PI-int scaffold_1467 . repeat_region 1000 1715 . ? . description=dust scaffold_1467 . repeat_region 1716 3236 . - . description=Gypsy-2-I_PI-int scaffold_1467 . repeat_region 3083 3090 . ? . description=dust scaffold_1467 . repeat_region 3246 3360 . - . description=Gypsy-1-LTR_PI scaffold_1467 ensembl protein_coding_gene 44 3070 . - . ID=Physo145513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14670001;logic_name=jgi_physo1_1 scaffold_1467 ensembl transcript 44 3070 . - . ID=Physo145513;Parent=Physo145513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1467 . CDS 44 974 . - 0 ID=Physo145513;Parent=Physo145513;rank=3 scaffold_1467 . exon 44 974 . - . ID=Physo145513.3;Parent=Physo145513;constitutive=1;ensembl_phase=2;rank=3 scaffold_1467 . CDS 2029 2257 . - 0 ID=Physo145513;Parent=Physo145513;rank=2 scaffold_1467 . exon 2029 2257 . - . ID=Physo145513.2;Parent=Physo145513;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1467 . CDS 2386 3070 . - 0 ID=Physo145513;Parent=Physo145513;rank=1 scaffold_1467 . exon 2386 3070 . - . ID=Physo145513.1;Parent=Physo145513;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1469 1 3852 scaffold_1469 . repeat_region 1458 2389 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1482 1 3852 scaffold_1482 . repeat_region 1307 2525 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1468 1 3853 scaffold_1468 . biological_region 494 495 0.999 + . logic_name=eponine scaffold_1468 . biological_region 628 630 0.999 - . logic_name=eponine scaffold_1468 . biological_region 683 685 0.999 + . logic_name=eponine scaffold_1468 . repeat_region 1502 2985 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1462 1 3854 scaffold_1462 . repeat_region 601 637 . ? . description=trf scaffold_1462 . repeat_region 693 721 . ? . description=trf scaffold_1462 . biological_region 983 984 0.999 - . logic_name=eponine scaffold_1462 . repeat_region 1407 2836 . ? . description=dust scaffold_1462 . biological_region 3670 3670 0.999 - . logic_name=eponine scaffold_1462 ensembl protein_coding_gene 826 1392 . - . ID=Physo109752;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_14620001;logic_name=jgi_physo1_1 scaffold_1462 ensembl transcript 826 1392 . - . ID=Physo109752;Parent=Physo109752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1462 . CDS 826 1284 . - 0 ID=Physo109752;Parent=Physo109752;rank=1 scaffold_1462 . exon 826 1392 . - . ID=Physo109752.1;Parent=Physo109752;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1462 ensembl protein_coding_gene 2845 3834 . - . ID=Physo145512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14620002;logic_name=jgi_physo1_1 scaffold_1462 ensembl transcript 2845 3834 . - . ID=Physo145512;Parent=Physo145512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1462 . CDS 2845 3834 . - 0 ID=Physo145512;Parent=Physo145512;rank=1 scaffold_1462 . exon 2845 3834 . - . ID=Physo145512.1;Parent=Physo145512;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1464 1 3854 scaffold_1464 . repeat_region 1315 2514 . ? . description=dust scaffold_1464 . repeat_region 2517 2662 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1465 1 3855 scaffold_1465 . repeat_region 1 1318 . - . description=GypsyPi-1c_I-int scaffold_1465 . biological_region 560 564 0.999 + . logic_name=eponine scaffold_1465 . repeat_region 1319 2691 . ? . description=dust scaffold_1465 . repeat_region 2694 2793 . - . description=GypsyPi-1c_I-int scaffold_1465 . repeat_region 2796 3855 . - . description=GypsyPi-1c_I-int scaffold_1465 . repeat_region 3272 3354 . ? . description=trf scaffold_1465 . repeat_region 3334 3404 . ? . description=trf scaffold_1465 . repeat_region 3385 3550 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1466 1 3855 scaffold_1466 . repeat_region 1404 2636 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1463 1 3858 scaffold_1463 . repeat_region 3168 3216 . ? . description=trf scaffold_1463 . biological_region 3276 3278 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1461 1 3862 scaffold_1461 . biological_region 207 210 0.999 + . logic_name=eponine scaffold_1461 . biological_region 229 232 0.999 + . logic_name=eponine scaffold_1461 . biological_region 338 340 0.999 - . logic_name=eponine scaffold_1461 . repeat_region 1093 2483 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1542 1 3871 scaffold_1542 . repeat_region 1 787 . - . description=Polinton-1_PI scaffold_1542 . repeat_region 789 2075 . ? . description=dust scaffold_1542 . repeat_region 2076 2813 . - . description=Polinton-1_PI scaffold_1542 . repeat_region 3785 3824 . ? . description=trf scaffold_1542 ensembl protein_coding_gene 2993 3871 . - . ID=Physo145528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_15420001;logic_name=jgi_physo1_1 scaffold_1542 ensembl transcript 2993 3871 . - . ID=Physo145528;Parent=Physo145528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1542 . CDS 2993 3829 . - 0 ID=Physo145528;Parent=Physo145528;rank=1 scaffold_1542 . exon 2993 3871 . - . ID=Physo145528.1;Parent=Physo145528;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1459 1 3872 scaffold_1459 . repeat_region 1033 2605 . ? . description=dust scaffold_1459 . repeat_region 2722 2741 . ? . description=trf scaffold_1459 . repeat_region 3004 3047 . ? . description=trf scaffold_1459 . repeat_region 3092 3176 . ? . description=trf scaffold_1459 . repeat_region 3092 3185 . ? . description=trf scaffold_1459 . repeat_region 3102 3202 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1458 1 3873 scaffold_1458 . repeat_region 1533 2778 . ? . description=dust scaffold_1458 ensembl protein_coding_gene 2906 3787 . + . ID=Physo109751;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_14580001;logic_name=jgi_physo1_1 scaffold_1458 ensembl transcript 2906 3787 . + . ID=Physo109751;Parent=Physo109751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1458 . CDS 2906 3787 . + 0 ID=Physo109751;Parent=Physo109751;rank=1 scaffold_1458 . exon 2906 3787 . + . ID=Physo109751.1;Parent=Physo109751;constitutive=1;rank=1 scaffold_1458 ensembl protein_coding_gene 37 1461 . + . ID=Physo145509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14580001;logic_name=jgi_physo1_1 scaffold_1458 ensembl transcript 37 1461 . + . ID=Physo145509;Parent=Physo145509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1458 . CDS 37 153 . + 0 ID=Physo145509;Parent=Physo145509;rank=1 scaffold_1458 . exon 37 153 . + . ID=Physo145509.1;Parent=Physo145509;constitutive=1;rank=1 scaffold_1458 . CDS 182 1348 . + 0 ID=Physo145509;Parent=Physo145509;rank=2 scaffold_1458 . exon 182 1348 . + . ID=Physo145509.2;Parent=Physo145509;constitutive=1;rank=2 scaffold_1458 . CDS 1420 1461 . + 0 ID=Physo145509;Parent=Physo145509;rank=3 scaffold_1458 . exon 1420 1461 . + . ID=Physo145509.3;Parent=Physo145509;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1456 1 3874 scaffold_1456 . biological_region 348 352 0.999 + . logic_name=eponine scaffold_1456 . repeat_region 422 446 . ? . description=trf scaffold_1456 . repeat_region 755 2379 . ? . description=dust scaffold_1456 . biological_region 3658 3662 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1457 1 3875 scaffold_1457 . repeat_region 682 690 . ? . description=dust scaffold_1457 . repeat_region 1890 2910 . ? . description=dust scaffold_1457 ensembl protein_coding_gene 3129 3780 . + . ID=Physo145508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14570001;logic_name=jgi_physo1_1 scaffold_1457 ensembl transcript 3129 3780 . + . ID=Physo145508;Parent=Physo145508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1457 . CDS 3129 3779 . + 0 ID=Physo145508;Parent=Physo145508;rank=1 scaffold_1457 . exon 3129 3780 . + . ID=Physo145508.1;Parent=Physo145508;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1455 1 3877 scaffold_1455 . repeat_region 1201 1234 . ? . description=trf scaffold_1455 . repeat_region 1551 2487 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1454 1 3881 scaffold_1454 . repeat_region 839 915 . - . description=GypsyPi-1c_LTR scaffold_1454 . repeat_region 925 2574 . ? . description=dust scaffold_1454 . repeat_region 2686 3791 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1476 1 3886 scaffold_1476 . repeat_region 189 198 . ? . description=dust scaffold_1476 . repeat_region 1262 2997 . ? . description=dust scaffold_1476 . repeat_region 3718 3776 . ? . description=dust scaffold_1476 . repeat_region 3718 3776 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1451 1 3887 scaffold_1451 . repeat_region 129 177 . ? . description=dust scaffold_1451 . repeat_region 1145 2955 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1452 1 3893 scaffold_1452 . repeat_region 30 190 . ? . description=trf scaffold_1452 . biological_region 1069 1072 0.999 + . logic_name=eponine scaffold_1452 . repeat_region 1140 2690 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1449 1 3897 scaffold_1449 . repeat_region 34 77 . ? . description=dust scaffold_1449 . repeat_region 1927 2964 . ? . description=dust scaffold_1449 . biological_region 3266 3268 0.999 - . logic_name=eponine scaffold_1449 . biological_region 3329 3330 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1548 1 3897 scaffold_1548 . repeat_region 373 384 . ? . description=dust scaffold_1548 . repeat_region 1051 1079 . ? . description=trf scaffold_1548 . repeat_region 1209 1217 . ? . description=dust scaffold_1548 . repeat_region 1226 3046 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1447 1 3901 scaffold_1447 . repeat_region 1493 2021 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1448 1 3901 scaffold_1448 . repeat_region 1 1181 . + . description=Gypsy-2-I_PI-int scaffold_1448 . repeat_region 1226 2369 . ? . description=dust scaffold_1448 . repeat_region 2370 2599 . + . description=Gypsy-2-I_PI-int scaffold_1448 . repeat_region 2683 2793 . + . description=Gypsy-1-LTR_PI scaffold_1448 ensembl protein_coding_gene 3075 3254 . - . ID=Physo126727;biotype=protein_coding;external_name=estExt_Genewise1.C_14480001;logic_name=jgi_physo1_1 scaffold_1448 ensembl transcript 3075 3254 . - . ID=Physo126727;Parent=Physo126727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1448 . CDS 3075 3254 . - 0 ID=Physo126727;Parent=Physo126727;rank=1 scaffold_1448 . exon 3075 3254 . - . ID=Physo126727.1;Parent=Physo126727;constitutive=1;rank=1 scaffold_1448 ensembl protein_coding_gene 417 1136 . - . ID=Physo145507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14480001;logic_name=jgi_physo1_1 scaffold_1448 ensembl transcript 417 1136 . - . ID=Physo145507;Parent=Physo145507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1448 . CDS 417 1136 . - 0 ID=Physo145507;Parent=Physo145507;rank=1 scaffold_1448 . exon 417 1136 . - . ID=Physo145507.1;Parent=Physo145507;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1444 1 3904 scaffold_1444 . repeat_region 1058 2535 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1443 1 3906 scaffold_1443 . repeat_region 998 2536 . ? . description=dust scaffold_1443 . repeat_region 2576 2767 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1445 1 3906 scaffold_1445 . repeat_region 1205 2662 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1446 1 3906 scaffold_1446 . repeat_region 49 60 . ? . description=dust scaffold_1446 . repeat_region 1746 2708 . ? . description=dust scaffold_1446 ensembl protein_coding_gene 77 275 . + . ID=Physo126725;biotype=protein_coding;external_name=estExt_Genewise1.C_14460001;logic_name=jgi_physo1_1 scaffold_1446 ensembl transcript 77 275 . + . ID=Physo126725;Parent=Physo126725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1446 . exon 77 275 . + . ID=Physo126725.1;Parent=Physo126725;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1446 . CDS 128 274 . + 0 ID=Physo126725;Parent=Physo126725;rank=1 scaffold_1446 ensembl protein_coding_gene 654 1020 . + . ID=Physo126726;biotype=protein_coding;external_name=estExt_Genewise1.C_14460002;logic_name=jgi_physo1_1 scaffold_1446 ensembl transcript 654 1020 . + . ID=Physo126726;Parent=Physo126726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1446 . exon 654 1020 . + . ID=Physo126726.1;Parent=Physo126726;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1446 . CDS 744 992 . + 0 ID=Physo126726;Parent=Physo126726;rank=1 ##gff-version 3 ##sequence-region scaffold_1442 1 3907 scaffold_1442 . biological_region 994 995 0.999 + . logic_name=eponine scaffold_1442 . biological_region 1016 1020 0.999 - . logic_name=eponine scaffold_1442 . biological_region 1031 1033 0.999 + . logic_name=eponine scaffold_1442 . biological_region 1074 1077 0.999 - . logic_name=eponine scaffold_1442 . biological_region 1130 1133 0.999 + . logic_name=eponine scaffold_1442 . biological_region 1132 1140 0.999 - . logic_name=eponine scaffold_1442 . repeat_region 1331 3044 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1441 1 3908 scaffold_1441 . repeat_region 1354 2794 . ? . description=dust scaffold_1441 ensembl protein_coding_gene 3002 3247 . + . ID=Physo126724;biotype=protein_coding;external_name=estExt_Genewise1.C_14410001;logic_name=jgi_physo1_1 scaffold_1441 ensembl transcript 3002 3247 . + . ID=Physo126724;Parent=Physo126724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1441 . exon 3002 3247 . + . ID=Physo126724.1;Parent=Physo126724;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1441 . CDS 3009 3179 . + 0 ID=Physo126724;Parent=Physo126724;rank=1 ##gff-version 3 ##sequence-region scaffold_1439 1 3910 scaffold_1439 . repeat_region 1312 2606 . ? . description=dust scaffold_1439 . repeat_region 2751 3047 . + . description=GypsyPi-1c_I-int scaffold_1439 . repeat_region 3051 3740 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1438 1 3911 scaffold_1438 . repeat_region 1347 2374 . ? . description=dust scaffold_1438 . repeat_region 2375 3680 . - . description=GypsyPi-1c_I-int scaffold_1438 ensembl protein_coding_gene 2376 2792 . - . ID=Physo126721;biotype=protein_coding;external_name=estExt_Genewise1.C_14380001;logic_name=jgi_physo1_1 scaffold_1438 ensembl transcript 2376 2792 . - . ID=Physo126721;Parent=Physo126721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1438 . CDS 2376 2633 . - 0 ID=Physo126721;Parent=Physo126721;rank=1 scaffold_1438 . exon 2376 2792 . - . ID=Physo126721.1;Parent=Physo126721;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1438 ensembl protein_coding_gene 2792 3907 . - . ID=Physo145506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14380001;logic_name=jgi_physo1_1 scaffold_1438 ensembl transcript 2792 3907 . - . ID=Physo145506;Parent=Physo145506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1438 . CDS 2792 2798 . - 0 ID=Physo145506;Parent=Physo145506;rank=3 scaffold_1438 . exon 2792 2798 . - . ID=Physo145506.3;Parent=Physo145506;constitutive=1;ensembl_phase=2;rank=3 scaffold_1438 . CDS 2842 3569 . - 0 ID=Physo145506;Parent=Physo145506;rank=2 scaffold_1438 . exon 2842 3569 . - . ID=Physo145506.2;Parent=Physo145506;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1438 . CDS 3668 3907 . - 0 ID=Physo145506;Parent=Physo145506;rank=1 scaffold_1438 . exon 3668 3907 . - . ID=Physo145506.1;Parent=Physo145506;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1436 1 3917 ##gff-version 3 ##sequence-region scaffold_1773 1 3919 scaffold_1773 . repeat_region 282 2024 . ? . description=trf scaffold_1773 . biological_region 288 290 0.999 + . logic_name=eponine scaffold_1773 . repeat_region 390 435 . ? . description=trf scaffold_1773 . repeat_region 707 752 . ? . description=trf scaffold_1773 . repeat_region 1025 1070 . ? . description=trf scaffold_1773 . repeat_region 1343 1388 . ? . description=trf scaffold_1773 . repeat_region 1661 1706 . ? . description=trf scaffold_1773 . repeat_region 2089 2123 . ? . description=trf scaffold_1773 . repeat_region 2164 2209 . ? . description=trf scaffold_1773 . biological_region 2183 2186 0.999 + . logic_name=eponine scaffold_1773 ensembl protein_coding_gene 1 3919 . + . ID=Physo145567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_17730001;logic_name=jgi_physo1_1 scaffold_1773 ensembl transcript 1 3919 . + . ID=Physo145567;Parent=Physo145567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1773 . exon 1 296 . + . ID=Physo145567.1;Parent=Physo145567;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1773 . exon 331 660 . + . ID=Physo145567.2;Parent=Physo145567;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_1773 . exon 702 1931 . + . ID=Physo145567.3;Parent=Physo145567;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_1773 . exon 2021 3919 . + . ID=Physo145567.4;Parent=Physo145567;constitutive=1;ensembl_phase=-1;rank=4 scaffold_1773 . CDS 2369 3919 . + 0 ID=Physo145567;Parent=Physo145567;rank=1 ##gff-version 3 ##sequence-region scaffold_1531 1 3922 scaffold_1531 . repeat_region 1063 2784 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1434 1 3923 scaffold_1434 . repeat_region 1293 2705 . ? . description=dust scaffold_1434 ensembl protein_coding_gene 12 497 . + . ID=Physo145505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14340001;logic_name=jgi_physo1_1 scaffold_1434 ensembl transcript 12 497 . + . ID=Physo145505;Parent=Physo145505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1434 . exon 12 497 . + . ID=Physo145505.1;Parent=Physo145505;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1434 . CDS 465 497 . + 0 ID=Physo145505;Parent=Physo145505;rank=1 ##gff-version 3 ##sequence-region scaffold_1433 1 3924 scaffold_1433 . repeat_region 1133 2596 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1435 1 3924 scaffold_1435 . repeat_region 524 630 . + . description=Polinton-1_PI scaffold_1435 . repeat_region 721 796 . - . description=Polinton-1_PI scaffold_1435 . repeat_region 815 913 . - . description=Polinton-1_PI scaffold_1435 . repeat_region 1265 2469 . ? . description=dust scaffold_1435 . repeat_region 2474 3924 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1432 1 3928 scaffold_1432 . repeat_region 241 293 . ? . description=trf scaffold_1432 . repeat_region 241 293 . ? . description=trf scaffold_1432 . biological_region 839 841 0.999 + . logic_name=eponine scaffold_1432 . repeat_region 868 942 . ? . description=trf scaffold_1432 . repeat_region 1147 2691 . ? . description=dust scaffold_1432 . repeat_region 3575 3627 . ? . description=trf scaffold_1432 . repeat_region 3575 3627 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1430 1 3929 scaffold_1430 . biological_region 101 104 0.999 - . logic_name=eponine scaffold_1430 . biological_region 159 161 0.999 + . logic_name=eponine scaffold_1430 . repeat_region 1033 2155 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1431 1 3930 scaffold_1431 . repeat_region 1209 1218 . ? . description=dust scaffold_1431 . repeat_region 1290 2586 . ? . description=dust scaffold_1431 . biological_region 3372 3376 0.999 + . logic_name=eponine scaffold_1431 . biological_region 3846 3847 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1429 1 3931 scaffold_1429 . biological_region 689 690 0.999 - . logic_name=eponine scaffold_1429 . repeat_region 1198 2681 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1437 1 3933 scaffold_1437 . repeat_region 1112 1164 . ? . description=trf scaffold_1437 . repeat_region 1294 2238 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1427 1 3934 scaffold_1427 . repeat_region 53 92 . ? . description=trf scaffold_1427 . biological_region 1438 1442 0.999 + . logic_name=eponine scaffold_1427 . repeat_region 1464 1639 . ? . description=trf scaffold_1427 . biological_region 1588 1593 0.999 - . logic_name=eponine scaffold_1427 . biological_region 3861 3863 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1428 1 3935 scaffold_1428 . repeat_region 754 2357 . ? . description=dust scaffold_1428 . repeat_region 2544 2623 . ? . description=dust scaffold_1428 . repeat_region 2546 2619 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1426 1 3936 scaffold_1426 . biological_region 335 341 0.999 + . logic_name=eponine scaffold_1426 . biological_region 369 374 0.999 + . logic_name=eponine scaffold_1426 . biological_region 393 394 0.999 - . logic_name=eponine scaffold_1426 . biological_region 399 401 0.999 + . logic_name=eponine scaffold_1426 . biological_region 432 437 0.999 + . logic_name=eponine scaffold_1426 . biological_region 448 452 0.999 - . logic_name=eponine scaffold_1426 . biological_region 475 478 0.999 - . logic_name=eponine scaffold_1426 . biological_region 495 507 0.999 - . logic_name=eponine scaffold_1426 . biological_region 589 595 0.999 - . logic_name=eponine scaffold_1426 . biological_region 606 613 0.999 - . logic_name=eponine scaffold_1426 . repeat_region 1115 2731 . ? . description=dust scaffold_1426 . repeat_region 3483 3547 . ? . description=trf scaffold_1426 ensembl protein_coding_gene 1 610 . - . ID=Physo145504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14260001;logic_name=jgi_physo1_1 scaffold_1426 ensembl transcript 1 610 . - . ID=Physo145504;Parent=Physo145504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1426 . exon 1 610 . - . ID=Physo145504.1;Parent=Physo145504;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1426 . CDS 2 505 . - 0 ID=Physo145504;Parent=Physo145504;rank=1 ##gff-version 3 ##sequence-region scaffold_1450 1 3936 scaffold_1450 . repeat_region 3 1088 . + . description=GypsyPi-1c_I-int scaffold_1450 . repeat_region 759 859 . ? . description=trf scaffold_1450 . repeat_region 809 891 . ? . description=trf scaffold_1450 . biological_region 1074 1080 0.999 - . logic_name=eponine scaffold_1450 . repeat_region 1606 3063 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1423 1 3945 scaffold_1423 . repeat_region 79 87 . ? . description=dust scaffold_1423 . repeat_region 563 570 . ? . description=dust scaffold_1423 . repeat_region 1299 2414 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1478 1 3946 scaffold_1478 . repeat_region 1308 3052 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1421 1 3948 scaffold_1421 . repeat_region 706 798 . ? . description=trf scaffold_1421 . repeat_region 711 815 . ? . description=trf scaffold_1421 . repeat_region 941 2376 . ? . description=dust scaffold_1421 . repeat_region 3159 3167 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1417 1 3952 scaffold_1417 . repeat_region 1 34 . ? . description=trf scaffold_1417 . repeat_region 611 640 . ? . description=trf scaffold_1417 . repeat_region 1690 1697 . ? . description=dust scaffold_1417 . repeat_region 1708 1730 . ? . description=trf scaffold_1417 . repeat_region 2116 2487 . ? . description=dust scaffold_1417 . repeat_region 3115 3176 . ? . description=dust scaffold_1417 . repeat_region 3219 3241 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1506 1 3954 scaffold_1506 . repeat_region 316 397 . ? . description=trf scaffold_1506 . repeat_region 947 2628 . ? . description=dust scaffold_1506 ensembl protein_coding_gene 2630 3100 . + . ID=Physo126752;biotype=protein_coding;external_name=estExt_Genewise1.C_15060001;logic_name=jgi_physo1_1 scaffold_1506 ensembl transcript 2630 3100 . + . ID=Physo126752;Parent=Physo126752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1506 . exon 2630 3100 . + . ID=Physo126752.1;Parent=Physo126752;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1506 . CDS 2765 3100 . + 0 ID=Physo126752;Parent=Physo126752;rank=1 scaffold_1506 ensembl protein_coding_gene 3446 3805 . + . ID=Physo126753;biotype=protein_coding;external_name=estExt_Genewise1.C_15060002;logic_name=jgi_physo1_1 scaffold_1506 ensembl transcript 3446 3805 . + . ID=Physo126753;Parent=Physo126753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1506 . exon 3446 3805 . + . ID=Physo126753.1;Parent=Physo126753;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1506 . CDS 3473 3805 . + 0 ID=Physo126753;Parent=Physo126753;rank=1 ##gff-version 3 ##sequence-region scaffold_1416 1 3955 scaffold_1416 . repeat_region 315 365 . ? . description=trf scaffold_1416 . repeat_region 315 367 . ? . description=trf scaffold_1416 . repeat_region 428 465 . ? . description=trf scaffold_1416 . repeat_region 1189 2291 . ? . description=dust scaffold_1416 . repeat_region 3468 3518 . ? . description=trf scaffold_1416 . repeat_region 3468 3520 . ? . description=trf scaffold_1416 . repeat_region 3581 3618 . ? . description=trf scaffold_1416 . biological_region 3836 3838 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1415 1 3957 scaffold_1415 . biological_region 1065 1067 0.999 - . logic_name=eponine scaffold_1415 . repeat_region 1688 2761 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1413 1 3958 scaffold_1413 . repeat_region 1191 1243 . ? . description=trf scaffold_1413 . repeat_region 1573 2786 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1412 1 3959 scaffold_1412 . repeat_region 877 2561 . ? . description=dust scaffold_1412 . repeat_region 2618 3957 . - . description=GypsyPi-1c_I-int scaffold_1412 ensembl protein_coding_gene 87 467 . - . ID=Physo126713;biotype=protein_coding;external_name=estExt_Genewise1.C_14120004;logic_name=jgi_physo1_1 scaffold_1412 ensembl transcript 87 467 . - . ID=Physo126713;Parent=Physo126713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1412 . CDS 87 398 . - 0 ID=Physo126713;Parent=Physo126713;rank=1 scaffold_1412 . exon 87 467 . - . ID=Physo126713.1;Parent=Physo126713;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1412 ensembl protein_coding_gene 2816 3950 . - . ID=Physo145500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14120001;logic_name=jgi_physo1_1 scaffold_1412 ensembl transcript 2816 3950 . - . ID=Physo145500;Parent=Physo145500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1412 . CDS 2816 2840 . - 0 ID=Physo145500;Parent=Physo145500;rank=2 scaffold_1412 . exon 2816 2840 . - . ID=Physo145500.2;Parent=Physo145500;constitutive=1;ensembl_phase=2;rank=2 scaffold_1412 . CDS 2986 3950 . - 0 ID=Physo145500;Parent=Physo145500;rank=1 scaffold_1412 . exon 2986 3950 . - . ID=Physo145500.1;Parent=Physo145500;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1414 1 3959 scaffold_1414 . biological_region 915 922 0.999 + . logic_name=eponine scaffold_1414 . biological_region 990 991 0.999 + . logic_name=eponine scaffold_1414 . biological_region 1034 1038 0.999 - . logic_name=eponine scaffold_1414 . biological_region 1059 1061 0.999 + . logic_name=eponine scaffold_1414 . repeat_region 1393 2691 . ? . description=dust scaffold_1414 ensembl protein_coding_gene 717 1392 . - . ID=Physo126714;biotype=protein_coding;external_name=estExt_Genewise1.C_14140001;logic_name=jgi_physo1_1 scaffold_1414 ensembl transcript 717 1392 . - . ID=Physo126714;Parent=Physo126714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1414 . exon 717 1392 . - . ID=Physo126714.1;Parent=Physo126714;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1414 . CDS 828 1391 . - 0 ID=Physo126714;Parent=Physo126714;rank=1 ##gff-version 3 ##sequence-region scaffold_1411 1 3965 scaffold_1411 . repeat_region 521 546 . ? . description=dust scaffold_1411 . repeat_region 521 546 . ? . description=trf scaffold_1411 . repeat_region 1405 1434 . ? . description=dust scaffold_1411 . repeat_region 1483 1490 . ? . description=dust scaffold_1411 . repeat_region 2577 2635 . ? . description=trf scaffold_1411 . repeat_region 2814 2850 . ? . description=trf scaffold_1411 ensembl protein_coding_gene 244 1405 . + . ID=Physo145499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14110001;logic_name=jgi_physo1_1 scaffold_1411 ensembl transcript 244 1405 . + . ID=Physo145499;Parent=Physo145499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1411 . CDS 244 445 . + 0 ID=Physo145499;Parent=Physo145499;rank=1 scaffold_1411 . exon 244 445 . + . ID=Physo145499.1;Parent=Physo145499;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1411 . CDS 552 1405 . + 0 ID=Physo145499;Parent=Physo145499;rank=2 scaffold_1411 . exon 552 1405 . + . ID=Physo145499.2;Parent=Physo145499;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1485 1 3965 scaffold_1485 . repeat_region 1516 2625 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1410 1 3968 scaffold_1410 . repeat_region 1121 2381 . ? . description=dust scaffold_1410 . repeat_region 2631 2639 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1408 1 3969 scaffold_1408 . repeat_region 202 217 . ? . description=dust scaffold_1408 . repeat_region 271 278 . ? . description=dust scaffold_1408 . repeat_region 1361 2987 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1407 1 3972 scaffold_1407 . repeat_region 778 1285 . + . description=Polinton-1_PI scaffold_1407 . biological_region 1016 1017 0.999 + . logic_name=eponine scaffold_1407 . repeat_region 1568 2604 . ? . description=dust scaffold_1407 . repeat_region 2605 3967 . + . description=Polinton-1_PI scaffold_1407 ensembl protein_coding_gene 439 1567 . + . ID=Physo126709;biotype=protein_coding;external_name=estExt_Genewise1.C_14070001;logic_name=jgi_physo1_1 scaffold_1407 ensembl transcript 439 1567 . + . ID=Physo126709;Parent=Physo126709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1407 . exon 439 445 . + . ID=Physo126709.1;Parent=Physo126709;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1407 . exon 885 1483 . + . ID=Physo126709.2;Parent=Physo126709;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_1407 . CDS 901 1483 . + 0 ID=Physo126709;Parent=Physo126709;rank=1 scaffold_1407 . CDS 1556 1566 . + 0 ID=Physo126709;Parent=Physo126709;rank=2 scaffold_1407 . exon 1556 1567 . + . ID=Physo126709.3;Parent=Physo126709;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1405 1 3975 scaffold_1405 . repeat_region 1242 2839 . ? . description=dust scaffold_1405 . biological_region 3329 3331 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1406 1 3975 ##gff-version 3 ##sequence-region scaffold_1404 1 3977 scaffold_1404 . repeat_region 868 2620 . ? . description=dust scaffold_1404 . repeat_region 2939 3362 . ? . description=trf scaffold_1404 . repeat_region 3193 3541 . ? . description=trf scaffold_1404 . repeat_region 3193 3977 . ? . description=trf scaffold_1404 . repeat_region 3351 3977 . ? . description=trf scaffold_1404 . repeat_region 3519 3552 . ? . description=trf scaffold_1404 . repeat_region 3699 3732 . ? . description=trf scaffold_1404 . repeat_region 3879 3912 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1424 1 3984 scaffold_1424 . biological_region 61 61 0.999 + . logic_name=eponine scaffold_1424 . biological_region 85 88 0.999 - . logic_name=eponine scaffold_1424 . biological_region 186 188 0.999 - . logic_name=eponine scaffold_1424 . repeat_region 756 2209 . ? . description=dust scaffold_1424 . biological_region 3785 3787 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1440 1 3984 scaffold_1440 . repeat_region 1152 2442 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1400 1 3985 scaffold_1400 . repeat_region 639 696 . ? . description=trf scaffold_1400 . repeat_region 1032 2339 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1762 1 3989 scaffold_1762 . repeat_region 278 438 . ? . description=trf scaffold_1762 . repeat_region 1133 1191 . ? . description=trf scaffold_1762 . repeat_region 1192 3155 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1399 1 3992 scaffold_1399 . repeat_region 1777 2721 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1398 1 3994 scaffold_1398 . repeat_region 1195 2292 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1397 1 3997 scaffold_1397 . repeat_region 1839 2931 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1401 1 3998 scaffold_1401 . repeat_region 1229 2900 . ? . description=dust scaffold_1401 ensembl protein_coding_gene 1 3978 . + . ID=Physo145497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14010001;logic_name=jgi_physo1_1 scaffold_1401 ensembl transcript 1 3978 . + . ID=Physo145497;Parent=Physo145497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1401 . exon 1 1224 . + . ID=Physo145497.1;Parent=Physo145497;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1401 . CDS 91 1224 . + 0 ID=Physo145497;Parent=Physo145497;rank=1 scaffold_1401 . CDS 2921 3976 . + 0 ID=Physo145497;Parent=Physo145497;rank=2 scaffold_1401 . exon 2921 3978 . + . ID=Physo145497.2;Parent=Physo145497;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_1395 1 3999 scaffold_1395 . repeat_region 1301 2815 . ? . description=dust scaffold_1395 . biological_region 3703 3710 0.999 + . logic_name=eponine scaffold_1395 . biological_region 3811 3815 0.999 - . logic_name=eponine scaffold_1395 ensembl protein_coding_gene 3515 3999 . - . ID=Physo126699;biotype=protein_coding;external_name=estExt_Genewise1.C_13950001;logic_name=jgi_physo1_1 scaffold_1395 ensembl transcript 3515 3999 . - . ID=Physo126699;Parent=Physo126699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1395 . exon 3515 3999 . - . ID=Physo126699.1;Parent=Physo126699;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1395 . CDS 3644 3997 . - 0 ID=Physo126699;Parent=Physo126699;rank=1 scaffold_1395 ensembl protein_coding_gene 2816 3538 . + . ID=Physo145495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13950001;logic_name=jgi_physo1_1 scaffold_1395 ensembl transcript 2816 3538 . + . ID=Physo145495;Parent=Physo145495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1395 . exon 2816 3538 . + . ID=Physo145495.1;Parent=Physo145495;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1395 . CDS 2846 3316 . + 0 ID=Physo145495;Parent=Physo145495;rank=1 ##gff-version 3 ##sequence-region scaffold_1396 1 4000 scaffold_1396 . biological_region 1315 1317 0.999 + . logic_name=eponine scaffold_1396 . biological_region 1358 1364 0.999 - . logic_name=eponine scaffold_1396 . repeat_region 1747 2779 . ? . description=dust scaffold_1396 ensembl protein_coding_gene 62 1538 . - . ID=Physo145496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13960001;logic_name=jgi_physo1_1 scaffold_1396 ensembl transcript 62 1538 . - . ID=Physo145496;Parent=Physo145496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1396 . exon 62 1538 . - . ID=Physo145496.1;Parent=Physo145496;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1396 . CDS 132 1538 . - 0 ID=Physo145496;Parent=Physo145496;rank=1 ##gff-version 3 ##sequence-region scaffold_1394 1 4005 scaffold_1394 . biological_region 115 117 0.999 + . logic_name=eponine scaffold_1394 . repeat_region 1000 2386 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1392 1 4009 scaffold_1392 . repeat_region 267 374 . ? . description=trf scaffold_1392 . repeat_region 636 679 . ? . description=trf scaffold_1392 . repeat_region 1099 2462 . ? . description=dust scaffold_1392 . repeat_region 3288 3312 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1420 1 4010 scaffold_1420 . repeat_region 728 735 . ? . description=dust scaffold_1420 . repeat_region 985 2738 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1391 1 4014 scaffold_1391 . biological_region 933 935 0.999 - . logic_name=eponine scaffold_1391 ensembl protein_coding_gene 64 1325 . - . ID=Physo145493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13910001;logic_name=jgi_physo1_1 scaffold_1391 ensembl transcript 64 1325 . - . ID=Physo145493;Parent=Physo145493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1391 . CDS 64 1164 . - 0 ID=Physo145493;Parent=Physo145493;rank=2 scaffold_1391 . exon 64 1164 . - . ID=Physo145493.2;Parent=Physo145493;constitutive=1;rank=2 scaffold_1391 . CDS 1275 1325 . - 0 ID=Physo145493;Parent=Physo145493;rank=1 scaffold_1391 . exon 1275 1325 . - . ID=Physo145493.1;Parent=Physo145493;constitutive=1;rank=1 scaffold_1391 ensembl protein_coding_gene 2131 3693 . - . ID=Physo145494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13910002;logic_name=jgi_physo1_1 scaffold_1391 ensembl transcript 2131 3693 . - . ID=Physo145494;Parent=Physo145494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1391 . CDS 2131 3125 . - 0 ID=Physo145494;Parent=Physo145494;rank=2 scaffold_1391 . exon 2131 3125 . - . ID=Physo145494.2;Parent=Physo145494;constitutive=1;ensembl_phase=1;rank=2 scaffold_1391 . CDS 3291 3693 . - 0 ID=Physo145494;Parent=Physo145494;rank=1 scaffold_1391 . exon 3291 3693 . - . ID=Physo145494.1;Parent=Physo145494;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1386 1 4019 scaffold_1386 . biological_region 156 159 0.999 - . logic_name=eponine scaffold_1386 . biological_region 1303 1305 0.999 - . logic_name=eponine scaffold_1386 . biological_region 1319 1322 0.999 + . logic_name=eponine scaffold_1386 . biological_region 1594 1595 0.999 - . logic_name=eponine scaffold_1386 . repeat_region 1866 2442 . ? . description=dust scaffold_1386 . biological_region 2530 2531 0.999 - . logic_name=eponine scaffold_1386 . repeat_region 3048 3116 . + . description=Gypsy-2-LTR_PI scaffold_1386 . repeat_region 3126 4017 . + . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_1388 1 4019 scaffold_1388 . repeat_region 1315 1356 . ? . description=trf scaffold_1388 . repeat_region 3116 3128 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1387 1 4022 scaffold_1387 . repeat_region 1073 2933 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1389 1 4025 scaffold_1389 . repeat_region 528 537 . ? . description=dust scaffold_1389 . repeat_region 1452 3044 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1385 1 4029 scaffold_1385 . repeat_region 1454 3315 . ? . description=dust scaffold_1385 . repeat_region 3316 3985 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1384 1 4033 scaffold_1384 . repeat_region 1255 3024 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1382 1 4038 scaffold_1382 . biological_region 1199 1199 0.999 + . logic_name=eponine scaffold_1382 . repeat_region 1433 2729 . ? . description=dust scaffold_1382 ensembl protein_coding_gene 2730 3351 . + . ID=Physo126693;biotype=protein_coding;external_name=estExt_Genewise1.C_13820002;logic_name=jgi_physo1_1 scaffold_1382 ensembl transcript 2730 3351 . + . ID=Physo126693;Parent=Physo126693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1382 . exon 2730 3351 . + . ID=Physo126693.1;Parent=Physo126693;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1382 . CDS 2737 3351 . + 0 ID=Physo126693;Parent=Physo126693;rank=1 scaffold_1382 ensembl protein_coding_gene 92 1355 . + . ID=Physo145491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13820001;logic_name=jgi_physo1_1 scaffold_1382 ensembl transcript 92 1355 . + . ID=Physo145491;Parent=Physo145491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1382 . CDS 92 1278 . + 0 ID=Physo145491;Parent=Physo145491;rank=1 scaffold_1382 . exon 92 1278 . + . ID=Physo145491.1;Parent=Physo145491;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1382 . CDS 1298 1355 . + 0 ID=Physo145491;Parent=Physo145491;rank=2 scaffold_1382 . exon 1298 1355 . + . ID=Physo145491.2;Parent=Physo145491;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1383 1 4038 scaffold_1383 . biological_region 19 26 0.999 + . logic_name=eponine scaffold_1383 . biological_region 42 48 0.999 + . logic_name=eponine scaffold_1383 . biological_region 68 76 0.999 - . logic_name=eponine scaffold_1383 . biological_region 79 82 0.999 + . logic_name=eponine scaffold_1383 . biological_region 128 128 0.999 + . logic_name=eponine scaffold_1383 . biological_region 148 153 0.999 + . logic_name=eponine scaffold_1383 . repeat_region 298 427 . ? . description=trf scaffold_1383 . biological_region 443 448 0.999 - . logic_name=eponine scaffold_1383 . biological_region 496 497 0.999 - . logic_name=eponine scaffold_1383 . biological_region 499 503 0.999 + . logic_name=eponine scaffold_1383 . biological_region 525 528 0.999 - . logic_name=eponine scaffold_1383 . biological_region 737 739 0.999 + . logic_name=eponine scaffold_1383 . repeat_region 864 2522 . ? . description=dust scaffold_1383 . repeat_region 2543 2589 . ? . description=trf scaffold_1383 . repeat_region 3470 4038 . ? . description=trf scaffold_1383 . repeat_region 3588 3624 . ? . description=trf scaffold_1383 . repeat_region 3718 3754 . ? . description=trf scaffold_1383 . repeat_region 3848 3884 . ? . description=trf scaffold_1383 . repeat_region 3978 4014 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1381 1 4040 scaffold_1381 . biological_region 77 81 0.999 + . logic_name=eponine scaffold_1381 . biological_region 164 165 0.999 + . logic_name=eponine scaffold_1381 . repeat_region 1379 1391 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1393 1 4040 scaffold_1393 . repeat_region 1357 3064 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1403 1 4043 scaffold_1403 . repeat_region 959 2419 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1684 1 4047 scaffold_1684 . repeat_region 784 2591 . ? . description=dust scaffold_1684 ensembl protein_coding_gene 34 408 . + . ID=Physo145555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_16840001;logic_name=jgi_physo1_1 scaffold_1684 ensembl transcript 34 408 . + . ID=Physo145555;Parent=Physo145555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1684 . exon 34 97 . + . ID=Physo145555.1;Parent=Physo145555;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1684 . exon 125 371 . + . ID=Physo145555.2;Parent=Physo145555;constitutive=1;ensembl_phase=-1;rank=2 scaffold_1684 . CDS 180 371 . + 0 ID=Physo145555;Parent=Physo145555;rank=1 scaffold_1684 . CDS 394 408 . + 0 ID=Physo145555;Parent=Physo145555;rank=2 scaffold_1684 . exon 394 408 . + . ID=Physo145555.3;Parent=Physo145555;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1379 1 4050 scaffold_1379 . repeat_region 1 49 . ? . description=dust scaffold_1379 . repeat_region 1 50 . ? . description=trf scaffold_1379 . repeat_region 786 2209 . ? . description=dust scaffold_1379 . repeat_region 2210 2633 . ? . description=trf scaffold_1379 . repeat_region 2210 2650 . ? . description=trf scaffold_1379 . repeat_region 2948 2955 . ? . description=dust scaffold_1379 ensembl protein_coding_gene 161 2827 . - . ID=Physo145490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13790001;logic_name=jgi_physo1_1 scaffold_1379 ensembl transcript 161 2827 . - . ID=Physo145490;Parent=Physo145490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1379 . exon 161 402 . - . ID=Physo145490.4;Parent=Physo145490;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_1379 . CDS 231 402 . - 0 ID=Physo145490;Parent=Physo145490;rank=4 scaffold_1379 . CDS 475 716 . - 0 ID=Physo145490;Parent=Physo145490;rank=3 scaffold_1379 . exon 475 716 . - . ID=Physo145490.3;Parent=Physo145490;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1379 . CDS 2242 2688 . - 0 ID=Physo145490;Parent=Physo145490;rank=2 scaffold_1379 . exon 2242 2688 . - . ID=Physo145490.2;Parent=Physo145490;constitutive=1;rank=2 scaffold_1379 . CDS 2771 2827 . - 0 ID=Physo145490;Parent=Physo145490;rank=1 scaffold_1379 . exon 2771 2827 . - . ID=Physo145490.1;Parent=Physo145490;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1380 1 4053 scaffold_1380 . repeat_region 95 138 . ? . description=trf scaffold_1380 . repeat_region 290 1336 . + . description=Polinton-1_PI scaffold_1380 . repeat_region 1126 1133 . ? . description=dust scaffold_1380 . repeat_region 1344 2770 . ? . description=dust scaffold_1380 . repeat_region 3598 4044 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1377 1 4054 scaffold_1377 . repeat_region 1460 3244 . ? . description=dust scaffold_1377 . repeat_region 3245 4046 . + . description=GypsyPi-1c_I-int scaffold_1377 ensembl protein_coding_gene 3263 4048 . + . ID=Physo126686;biotype=protein_coding;external_name=estExt_Genewise1.C_13770001;logic_name=jgi_physo1_1 scaffold_1377 ensembl transcript 3263 4048 . + . ID=Physo126686;Parent=Physo126686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1377 . exon 3263 4048 . + . ID=Physo126686.1;Parent=Physo126686;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1377 . CDS 3281 4048 . + 0 ID=Physo126686;Parent=Physo126686;rank=1 ##gff-version 3 ##sequence-region scaffold_1619 1 4054 scaffold_1619 . repeat_region 854 2686 . ? . description=dust scaffold_1619 . biological_region 2992 2995 0.999 + . logic_name=eponine scaffold_1619 . biological_region 3352 3354 0.999 + . logic_name=eponine scaffold_1619 . biological_region 3448 3451 0.999 - . logic_name=eponine scaffold_1619 . biological_region 3503 3505 0.999 + . logic_name=eponine scaffold_1619 . biological_region 3857 3857 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1378 1 4056 scaffold_1378 . repeat_region 587 614 . ? . description=trf scaffold_1378 . repeat_region 587 614 . ? . description=trf scaffold_1378 . repeat_region 1619 3249 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1376 1 4057 scaffold_1376 . repeat_region 14 775 . + . description=GypsyPi-1c_I-int scaffold_1376 . biological_region 709 712 0.999 - . logic_name=eponine scaffold_1376 . biological_region 918 922 0.999 - . logic_name=eponine scaffold_1376 . repeat_region 1226 2620 . ? . description=dust scaffold_1376 . repeat_region 2721 2757 . ? . description=trf scaffold_1376 . repeat_region 2731 2774 . ? . description=trf scaffold_1376 ensembl protein_coding_gene 10 780 . + . ID=Physo126684;biotype=protein_coding;external_name=estExt_Genewise1.C_13760001;logic_name=jgi_physo1_1 scaffold_1376 ensembl transcript 10 780 . + . ID=Physo126684;Parent=Physo126684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1376 . exon 10 780 . + . ID=Physo126684.1;Parent=Physo126684;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1376 . CDS 43 780 . + 0 ID=Physo126684;Parent=Physo126684;rank=1 scaffold_1376 ensembl protein_coding_gene 1021 1215 . + . ID=Physo126685;biotype=protein_coding;external_name=estExt_Genewise1.C_13760002;logic_name=jgi_physo1_1 scaffold_1376 ensembl transcript 1021 1215 . + . ID=Physo126685;Parent=Physo126685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1376 . exon 1021 1215 . + . ID=Physo126685.1;Parent=Physo126685;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1376 . CDS 1037 1207 . + 0 ID=Physo126685;Parent=Physo126685;rank=1 ##gff-version 3 ##sequence-region scaffold_1375 1 4062 scaffold_1375 . repeat_region 701 743 . ? . description=trf scaffold_1375 . repeat_region 1768 3003 . ? . description=dust scaffold_1375 . repeat_region 3216 3334 . ? . description=trf scaffold_1375 . biological_region 3692 3694 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1372 1 4065 scaffold_1372 . repeat_region 1291 3092 . ? . description=dust scaffold_1372 . repeat_region 3529 3541 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1390 1 4070 scaffold_1390 . repeat_region 1205 1829 . ? . description=dust scaffold_1390 . repeat_region 3328 3382 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1422 1 4070 scaffold_1422 . repeat_region 472 480 . ? . description=dust scaffold_1422 . repeat_region 816 2744 . ? . description=dust scaffold_1422 ensembl protein_coding_gene 3168 4031 . + . ID=Physo145503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_14220001;logic_name=jgi_physo1_1 scaffold_1422 ensembl transcript 3168 4031 . + . ID=Physo145503;Parent=Physo145503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1422 . CDS 3168 4031 . + 0 ID=Physo145503;Parent=Physo145503;rank=1 scaffold_1422 . exon 3168 4031 . + . ID=Physo145503.1;Parent=Physo145503;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1371 1 4071 scaffold_1371 . repeat_region 197 207 . ? . description=dust scaffold_1371 . biological_region 695 695 0.999 + . logic_name=eponine scaffold_1371 . repeat_region 711 1001 . + . description=GypsyPi-1c_I-int scaffold_1371 . repeat_region 1007 2742 . ? . description=dust scaffold_1371 . repeat_region 2752 3076 . + . description=GypsyPi-1c_I-int scaffold_1371 . repeat_region 3168 3323 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1373 1 4074 scaffold_1373 . repeat_region 1372 3045 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1370 1 4077 scaffold_1370 . biological_region 1349 1350 0.999 + . logic_name=eponine scaffold_1370 . repeat_region 1449 2698 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1362 1 4085 scaffold_1362 . repeat_region 1327 2411 . ? . description=dust scaffold_1362 . biological_region 2582 2583 0.999 + . logic_name=eponine scaffold_1362 . biological_region 2685 2692 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1365 1 4085 scaffold_1365 . repeat_region 318 325 . ? . description=dust scaffold_1365 . repeat_region 1928 1935 . ? . description=dust scaffold_1365 . repeat_region 2395 2402 . ? . description=dust scaffold_1365 . repeat_region 2642 2664 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1367 1 4085 scaffold_1367 . repeat_region 1510 1869 . + . description=Sola3-1_PS scaffold_1367 . repeat_region 1870 2977 . ? . description=dust scaffold_1367 . repeat_region 2978 4085 . + . description=Sola3-1_PS ##gff-version 3 ##sequence-region scaffold_1366 1 4086 scaffold_1366 . repeat_region 1361 2872 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1361 1 4087 scaffold_1361 . repeat_region 711 892 . - . description=GypsyPi-1c_LTR scaffold_1361 . biological_region 1267 1270 0.999 + . logic_name=eponine scaffold_1361 . biological_region 1463 1468 0.999 + . logic_name=eponine scaffold_1361 . repeat_region 1703 3092 . ? . description=dust scaffold_1361 . repeat_region 3137 4087 . - . description=GypsyPi-1c_I-int scaffold_1361 . biological_region 3179 3186 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1363 1 4096 scaffold_1363 . repeat_region 1392 2885 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1419 1 4096 scaffold_1419 . repeat_region 1259 2824 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1357 1 4097 scaffold_1357 . repeat_region 1430 2807 . ? . description=dust scaffold_1357 ensembl protein_coding_gene 641 1174 . - . ID=Physo145487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13570001;logic_name=jgi_physo1_1 scaffold_1357 ensembl transcript 641 1174 . - . ID=Physo145487;Parent=Physo145487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1357 . CDS 641 1174 . - 0 ID=Physo145487;Parent=Physo145487;rank=1 scaffold_1357 . exon 641 1174 . - . ID=Physo145487.1;Parent=Physo145487;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1425 1 4099 scaffold_1425 . repeat_region 1627 2799 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1629 1 4100 scaffold_1629 . repeat_region 1 130 . ? . description=trf scaffold_1629 . repeat_region 5 111 . ? . description=trf scaffold_1629 . repeat_region 5 148 . ? . description=trf scaffold_1629 . repeat_region 22 64 . ? . description=trf scaffold_1629 . repeat_region 241 265 . ? . description=trf scaffold_1629 . repeat_region 395 430 . ? . description=trf scaffold_1629 . repeat_region 395 445 . ? . description=dust scaffold_1629 . repeat_region 963 992 . ? . description=dust scaffold_1629 . repeat_region 963 992 . ? . description=trf scaffold_1629 . repeat_region 963 992 . ? . description=trf scaffold_1629 . repeat_region 1361 1402 . + . description=(CACTT)n scaffold_1629 . repeat_region 1364 1402 . ? . description=trf scaffold_1629 . repeat_region 1364 3162 . ? . description=dust scaffold_1629 . repeat_region 3243 3334 . ? . description=trf scaffold_1629 . repeat_region 3263 3311 . ? . description=trf scaffold_1629 . repeat_region 3374 3423 . ? . description=trf scaffold_1629 . repeat_region 3423 3447 . ? . description=trf scaffold_1629 . repeat_region 3577 3618 . ? . description=trf scaffold_1629 . repeat_region 3577 3618 . ? . description=trf scaffold_1629 ensembl protein_coding_gene 3164 3760 . - . ID=Physo126826;biotype=protein_coding;external_name=estExt_Genewise1.C_16290001;logic_name=jgi_physo1_1 scaffold_1629 ensembl transcript 3164 3760 . - . ID=Physo126826;Parent=Physo126826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1629 . CDS 3164 3760 . - 0 ID=Physo126826;Parent=Physo126826;rank=1 scaffold_1629 . exon 3164 3760 . - . ID=Physo126826.1;Parent=Physo126826;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1358 1 4101 scaffold_1358 . repeat_region 804 1938 . ? . description=dust scaffold_1358 . repeat_region 2369 2392 . ? . description=trf scaffold_1358 . repeat_region 2511 2518 . ? . description=dust scaffold_1358 . biological_region 3001 3001 0.999 + . logic_name=eponine scaffold_1358 . repeat_region 3228 3276 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1354 1 4104 scaffold_1354 . repeat_region 955 2584 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1355 1 4104 scaffold_1355 . repeat_region 1 1519 . + . description=Polinton-1_PI scaffold_1355 . repeat_region 1653 3085 . ? . description=dust scaffold_1355 . repeat_region 3086 4101 . + . description=Polinton-1_PI scaffold_1355 . repeat_region 3753 3761 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1356 1 4104 scaffold_1356 . repeat_region 1080 1115 . ? . description=trf scaffold_1356 . repeat_region 1176 1228 . ? . description=trf scaffold_1356 . repeat_region 1176 1228 . ? . description=trf scaffold_1356 . repeat_region 1425 3376 . ? . description=dust scaffold_1356 ensembl protein_coding_gene 123 901 . + . ID=Physo145485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13560001;logic_name=jgi_physo1_1 scaffold_1356 ensembl transcript 123 901 . + . ID=Physo145485;Parent=Physo145485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1356 . CDS 123 385 . + 0 ID=Physo145485;Parent=Physo145485;rank=1 scaffold_1356 . exon 123 385 . + . ID=Physo145485.1;Parent=Physo145485;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1356 . CDS 430 901 . + 0 ID=Physo145485;Parent=Physo145485;rank=2 scaffold_1356 . exon 430 901 . + . ID=Physo145485.2;Parent=Physo145485;constitutive=1;ensembl_phase=2;rank=2 scaffold_1356 ensembl protein_coding_gene 3381 4059 . - . ID=Physo145486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13560002;logic_name=jgi_physo1_1 scaffold_1356 ensembl transcript 3381 4059 . - . ID=Physo145486;Parent=Physo145486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1356 . CDS 3381 3935 . - 0 ID=Physo145486;Parent=Physo145486;rank=1 scaffold_1356 . exon 3381 4059 . - . ID=Physo145486.1;Parent=Physo145486;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1352 1 4105 scaffold_1352 . repeat_region 595 751 . ? . description=trf scaffold_1352 . repeat_region 1867 2800 . ? . description=dust scaffold_1352 . repeat_region 2899 2924 . ? . description=trf scaffold_1352 . repeat_region 3519 3572 . ? . description=trf scaffold_1352 . repeat_region 3934 3942 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1360 1 4106 scaffold_1360 . repeat_region 528 578 . ? . description=trf scaffold_1360 . biological_region 659 662 0.999 - . logic_name=eponine scaffold_1360 . repeat_region 841 2268 . ? . description=dust scaffold_1360 . repeat_region 2274 4084 . - . description=GypsyPi-1c_I-int scaffold_1360 . repeat_region 2368 2603 . ? . description=trf scaffold_1360 . repeat_region 3096 3145 . ? . description=trf scaffold_1360 . repeat_region 3106 3145 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1353 1 4108 scaffold_1353 . repeat_region 1457 2564 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1350 1 4109 scaffold_1350 . repeat_region 1134 1211 . - . description=GypsyPi-1c_I-int scaffold_1350 . biological_region 1827 1829 0.999 - . logic_name=eponine scaffold_1350 . repeat_region 2016 2725 . ? . description=dust scaffold_1350 . repeat_region 2761 2810 . ? . description=trf scaffold_1350 . repeat_region 2761 3193 . - . description=GypsyPi-1c_I-int scaffold_1350 . repeat_region 2771 2810 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1351 1 4110 scaffold_1351 . repeat_region 1 95 . - . description=Polinton-1_PI scaffold_1351 . repeat_region 288 1458 . - . description=Polinton-1_PI scaffold_1351 . repeat_region 1459 2117 . ? . description=dust scaffold_1351 . repeat_region 2118 3384 . - . description=Polinton-1_PI scaffold_1351 ensembl protein_coding_gene 1203 2851 . - . ID=Physo145484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13510001;logic_name=jgi_physo1_1 scaffold_1351 ensembl transcript 1203 2851 . - . ID=Physo145484;Parent=Physo145484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1351 . CDS 1203 1213 . - 0 ID=Physo145484;Parent=Physo145484;rank=3 scaffold_1351 . exon 1203 1213 . - . ID=Physo145484.3;Parent=Physo145484;constitutive=1;ensembl_phase=1;rank=3 scaffold_1351 . CDS 1276 1347 . - 0 ID=Physo145484;Parent=Physo145484;rank=2 scaffold_1351 . exon 1276 1347 . - . ID=Physo145484.2;Parent=Physo145484;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1351 . CDS 2146 2851 . - 0 ID=Physo145484;Parent=Physo145484;rank=1 scaffold_1351 . exon 2146 2851 . - . ID=Physo145484.1;Parent=Physo145484;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1418 1 4111 scaffold_1418 . biological_region 286 289 0.999 - . logic_name=eponine scaffold_1418 . repeat_region 1298 2714 . ? . description=dust scaffold_1418 . biological_region 3837 3838 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1364 1 4112 scaffold_1364 . repeat_region 653 2688 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1348 1 4113 ##gff-version 3 ##sequence-region scaffold_1347 1 4114 scaffold_1347 . repeat_region 842 857 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1346 1 4117 scaffold_1346 . repeat_region 1666 1701 . ? . description=dust scaffold_1346 . repeat_region 1668 1701 . ? . description=trf scaffold_1346 . repeat_region 1907 1952 . ? . description=dust scaffold_1346 . repeat_region 1907 1960 . ? . description=trf scaffold_1346 . repeat_region 1961 3096 . ? . description=dust scaffold_1346 . biological_region 3367 3372 0.999 + . logic_name=eponine scaffold_1346 . biological_region 3481 3483 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1345 1 4119 scaffold_1345 . biological_region 987 990 0.999 - . logic_name=eponine scaffold_1345 . biological_region 1106 1108 0.999 - . logic_name=eponine scaffold_1345 . repeat_region 1441 2264 . ? . description=dust scaffold_1345 . repeat_region 2456 2463 . ? . description=dust scaffold_1345 . repeat_region 2605 2636 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1343 1 4122 scaffold_1343 . repeat_region 331 338 . ? . description=dust scaffold_1343 . repeat_region 1424 1439 . ? . description=dust scaffold_1343 . repeat_region 1948 3126 . ? . description=dust scaffold_1343 . repeat_region 3127 3232 . ? . description=trf scaffold_1343 . repeat_region 3127 3232 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1344 1 4122 scaffold_1344 . repeat_region 1147 1180 . ? . description=trf scaffold_1344 ensembl protein_coding_gene 2636 2887 . + . ID=Physo126664;biotype=protein_coding;external_name=estExt_Genewise1.C_13440001;logic_name=jgi_physo1_1 scaffold_1344 ensembl transcript 2636 2887 . + . ID=Physo126664;Parent=Physo126664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1344 . exon 2636 2887 . + . ID=Physo126664.1;Parent=Physo126664;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1344 . CDS 2667 2786 . + 0 ID=Physo126664;Parent=Physo126664;rank=1 ##gff-version 3 ##sequence-region scaffold_1338 1 4128 scaffold_1338 . biological_region 373 374 0.999 - . logic_name=eponine scaffold_1338 . repeat_region 1832 1864 . ? . description=trf scaffold_1338 . biological_region 2361 2363 0.999 + . logic_name=eponine scaffold_1338 . repeat_region 3026 3033 . ? . description=dust scaffold_1338 . repeat_region 3251 3261 . ? . description=dust scaffold_1338 . biological_region 3748 3750 0.999 - . logic_name=eponine scaffold_1338 ensembl protein_coding_gene 1 1600 . - . ID=Physo145480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13380001;logic_name=jgi_physo1_1 scaffold_1338 ensembl transcript 1 1600 . - . ID=Physo145480;Parent=Physo145480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1338 . exon 1 1600 . - . ID=Physo145480.1;Parent=Physo145480;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1338 . CDS 53 1525 . - 0 ID=Physo145480;Parent=Physo145480;rank=1 ##gff-version 3 ##sequence-region scaffold_1341 1 4128 scaffold_1341 . repeat_region 154 219 . ? . description=trf scaffold_1341 . repeat_region 748 1177 . ? . description=trf scaffold_1341 . repeat_region 1635 2175 . ? . description=dust scaffold_1341 . biological_region 2385 2389 0.999 - . logic_name=eponine scaffold_1341 . biological_region 2937 2941 0.999 + . logic_name=eponine scaffold_1341 . biological_region 3462 3467 0.999 + . logic_name=eponine scaffold_1341 ensembl protein_coding_gene 748 1141 . + . ID=Physo126663;biotype=protein_coding;external_name=estExt_Genewise1.C_13410001;logic_name=jgi_physo1_1 scaffold_1341 ensembl transcript 748 1141 . + . ID=Physo126663;Parent=Physo126663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1341 . exon 748 796 . + . ID=Physo126663.1;Parent=Physo126663;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1341 . CDS 781 796 . + 0 ID=Physo126663;Parent=Physo126663;rank=1 scaffold_1341 . CDS 866 1140 . + 0 ID=Physo126663;Parent=Physo126663;rank=2 scaffold_1341 . exon 866 1141 . + . ID=Physo126663.2;Parent=Physo126663;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1341 ensembl protein_coding_gene 2757 3539 . + . ID=Physo145481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13410001;logic_name=jgi_physo1_1 scaffold_1341 ensembl transcript 2757 3539 . + . ID=Physo145481;Parent=Physo145481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1341 . CDS 2757 3539 . + 0 ID=Physo145481;Parent=Physo145481;rank=1 scaffold_1341 . exon 2757 3539 . + . ID=Physo145481.1;Parent=Physo145481;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1339 1 4131 scaffold_1339 . repeat_region 2 865 . - . description=GypsyPi-1c_I-int scaffold_1339 . biological_region 1342 1343 0.999 - . logic_name=eponine scaffold_1339 . repeat_region 1430 2207 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1337 1 4133 scaffold_1337 . biological_region 1652 1655 0.999 + . logic_name=eponine scaffold_1337 . biological_region 1669 1676 0.999 + . logic_name=eponine scaffold_1337 . biological_region 1745 1749 0.999 - . logic_name=eponine scaffold_1337 . repeat_region 1957 3282 . ? . description=dust scaffold_1337 . biological_region 3428 3432 0.999 - . logic_name=eponine scaffold_1337 . biological_region 3595 3596 0.999 + . logic_name=eponine scaffold_1337 . biological_region 3611 3613 0.999 + . logic_name=eponine scaffold_1337 . biological_region 3622 3623 0.999 - . logic_name=eponine scaffold_1337 . biological_region 3766 3768 0.999 + . logic_name=eponine scaffold_1337 . biological_region 3786 3790 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1335 1 4134 scaffold_1335 . repeat_region 64 245 . + . description=GypsyPi-1c_LTR scaffold_1335 . repeat_region 2231 2892 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1336 1 4134 scaffold_1336 . repeat_region 1120 2829 . ? . description=dust scaffold_1336 . biological_region 3092 3096 0.999 + . logic_name=eponine scaffold_1336 . biological_region 3498 3499 0.999 + . logic_name=eponine scaffold_1336 . biological_region 3699 3702 0.999 + . logic_name=eponine scaffold_1336 . biological_region 3744 3759 0.999 + . logic_name=eponine scaffold_1336 . biological_region 3906 3908 0.999 - . logic_name=eponine scaffold_1336 . biological_region 4013 4018 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1359 1 4137 scaffold_1359 . biological_region 1021 1023 0.999 + . logic_name=eponine scaffold_1359 . repeat_region 1141 2870 . ? . description=dust scaffold_1359 . repeat_region 4108 4115 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1334 1 4142 scaffold_1334 . repeat_region 884 1977 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1333 1 4147 scaffold_1333 . biological_region 1183 1190 0.999 + . logic_name=eponine scaffold_1333 . repeat_region 1842 1876 . ? . description=trf scaffold_1333 . repeat_region 1888 2217 . ? . description=dust scaffold_1333 . biological_region 2738 2742 0.999 - . logic_name=eponine scaffold_1333 . biological_region 2748 2753 0.999 - . logic_name=eponine scaffold_1333 . repeat_region 4092 4147 . ? . description=dust scaffold_1333 ensembl tRNA_gene 3990 4061 . - . ID=EPrPSOG00000000013;biotype=tRNA;description=tRNA-Asp for anticodon GUC [Source:TRNASCAN_SE%3BAcc:tRNA-Asp];external_name=tRNA-Asp;logic_name=ncrna_eg scaffold_1333 ensembl transcript 3990 4061 . - . ID=EPrPSOT00000000013;Parent=EPrPSOG00000000013;biotype=tRNA;logic_name=ncrna_eg scaffold_1333 . exon 3990 4061 . - . ID=EPrPSOE00000000013;Parent=EPrPSOT00000000013;constitutive=1;rank=1 scaffold_1333 ensembl protein_coding_gene 2218 3529 . + . ID=Physo126662;biotype=protein_coding;external_name=estExt_Genewise1.C_13330004;logic_name=jgi_physo1_1 scaffold_1333 ensembl transcript 2218 3529 . + . ID=Physo126662;Parent=Physo126662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1333 . exon 2218 2269 . + . ID=Physo126662.1;Parent=Physo126662;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1333 . exon 2377 3529 . + . ID=Physo126662.2;Parent=Physo126662;constitutive=1;ensembl_phase=-1;rank=2 scaffold_1333 . CDS 2408 3529 . + 0 ID=Physo126662;Parent=Physo126662;rank=1 scaffold_1333 ensembl protein_coding_gene 43 1790 . + . ID=Physo145478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13330001;logic_name=jgi_physo1_1 scaffold_1333 ensembl transcript 43 1790 . + . ID=Physo145478;Parent=Physo145478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1333 . exon 43 1790 . + . ID=Physo145478.1;Parent=Physo145478;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1333 . CDS 591 1790 . + 0 ID=Physo145478;Parent=Physo145478;rank=1 ##gff-version 3 ##sequence-region scaffold_1332 1 4154 scaffold_1332 . repeat_region 3578 3704 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1331 1 4156 scaffold_1331 . repeat_region 839 1933 . ? . description=dust scaffold_1331 . biological_region 2980 2982 0.999 + . logic_name=eponine scaffold_1331 . biological_region 3028 3030 0.999 + . logic_name=eponine scaffold_1331 . biological_region 3081 3081 0.999 - . logic_name=eponine scaffold_1331 . biological_region 3966 3972 0.999 + . logic_name=eponine scaffold_1331 ensembl protein_coding_gene 2036 2191 . - . ID=Physo126655;biotype=protein_coding;external_name=estExt_Genewise1.C_13310001;logic_name=jgi_physo1_1 scaffold_1331 ensembl transcript 2036 2191 . - . ID=Physo126655;Parent=Physo126655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1331 . exon 2036 2191 . - . ID=Physo126655.1;Parent=Physo126655;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1331 . CDS 2037 2189 . - 0 ID=Physo126655;Parent=Physo126655;rank=1 scaffold_1331 ensembl protein_coding_gene 309 722 . - . ID=Physo126657;biotype=protein_coding;external_name=estExt_Genewise1.C_13310003;logic_name=jgi_physo1_1 scaffold_1331 ensembl transcript 309 722 . - . ID=Physo126657;Parent=Physo126657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1331 . CDS 309 572 . - 0 ID=Physo126657;Parent=Physo126657;rank=1 scaffold_1331 . exon 309 722 . - . ID=Physo126657.1;Parent=Physo126657;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1331 ensembl protein_coding_gene 2212 2544 . - . ID=Physo145476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13310001;logic_name=jgi_physo1_1 scaffold_1331 ensembl transcript 2212 2544 . - . ID=Physo145476;Parent=Physo145476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1331 . CDS 2212 2544 . - 0 ID=Physo145476;Parent=Physo145476;rank=1 scaffold_1331 . exon 2212 2544 . - . ID=Physo145476.1;Parent=Physo145476;constitutive=1;rank=1 scaffold_1331 ensembl protein_coding_gene 3420 4156 . + . ID=Physo145477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13310002;logic_name=jgi_physo1_1 scaffold_1331 ensembl transcript 3420 4156 . + . ID=Physo145477;Parent=Physo145477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1331 . CDS 3420 3559 . + 0 ID=Physo145477;Parent=Physo145477;rank=1 scaffold_1331 . exon 3420 3559 . + . ID=Physo145477.1;Parent=Physo145477;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1331 . CDS 3588 4155 . + 0 ID=Physo145477;Parent=Physo145477;rank=2 scaffold_1331 . exon 3588 4156 . + . ID=Physo145477.2;Parent=Physo145477;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1330 1 4160 scaffold_1330 . biological_region 590 591 0.999 + . logic_name=eponine scaffold_1330 . repeat_region 1081 2605 . ? . description=dust scaffold_1330 . repeat_region 2832 2876 . ? . description=dust scaffold_1330 . repeat_region 2832 2876 . ? . description=trf scaffold_1330 . repeat_region 3178 3218 . ? . description=trf scaffold_1330 . repeat_region 3322 3390 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1340 1 4160 scaffold_1340 . repeat_region 183 227 . ? . description=trf scaffold_1340 . repeat_region 1890 3036 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1329 1 4162 scaffold_1329 . repeat_region 1 1092 . - . description=GypsyPi-1c_I-int scaffold_1329 . repeat_region 1499 3005 . ? . description=dust scaffold_1329 . biological_region 3033 3036 0.999 + . logic_name=eponine scaffold_1329 . repeat_region 3040 3081 . ? . description=trf scaffold_1329 . biological_region 3132 3139 0.999 + . logic_name=eponine scaffold_1329 . repeat_region 3222 3262 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1327 1 4164 scaffold_1327 . biological_region 66 69 0.999 - . logic_name=eponine scaffold_1327 . biological_region 91 92 0.999 + . logic_name=eponine scaffold_1327 . biological_region 121 124 0.999 + . logic_name=eponine scaffold_1327 . repeat_region 1546 2615 . ? . description=dust scaffold_1327 . biological_region 2953 2957 0.999 + . logic_name=eponine scaffold_1327 . biological_region 3106 3106 0.999 + . logic_name=eponine scaffold_1327 . repeat_region 3237 3285 . ? . description=dust scaffold_1327 . repeat_region 3237 3285 . ? . description=trf scaffold_1327 . repeat_region 3245 3279 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1328 1 4164 scaffold_1328 . repeat_region 1215 1234 . ? . description=trf scaffold_1328 . repeat_region 1517 3384 . ? . description=dust scaffold_1328 ensembl protein_coding_gene 3525 4164 . + . ID=Physo145475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13280001;logic_name=jgi_physo1_1 scaffold_1328 ensembl transcript 3525 4164 . + . ID=Physo145475;Parent=Physo145475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1328 . CDS 3525 4109 . + 0 ID=Physo145475;Parent=Physo145475;rank=1 scaffold_1328 . exon 3525 4164 . + . ID=Physo145475.1;Parent=Physo145475;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1326 1 4169 scaffold_1326 . repeat_region 1054 2485 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1342 1 4172 scaffold_1342 . repeat_region 812 861 . ? . description=dust scaffold_1342 . repeat_region 2211 2940 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1325 1 4180 scaffold_1325 ensembl protein_coding_gene 930 2129 . + . ID=Physo145473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13250001;logic_name=jgi_physo1_1 scaffold_1325 ensembl transcript 930 2129 . + . ID=Physo145473;Parent=Physo145473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1325 . CDS 930 1160 . + 0 ID=Physo145473;Parent=Physo145473;rank=1 scaffold_1325 . exon 930 2129 . + . ID=Physo145473.1;Parent=Physo145473;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1325 ensembl protein_coding_gene 2341 3495 . - . ID=Physo145474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13250002;logic_name=jgi_physo1_1 scaffold_1325 ensembl transcript 2341 3495 . - . ID=Physo145474;Parent=Physo145474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1325 . CDS 2341 3495 . - 0 ID=Physo145474;Parent=Physo145474;rank=1 scaffold_1325 . exon 2341 3495 . - . ID=Physo145474.1;Parent=Physo145474;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1324 1 4185 scaffold_1324 . repeat_region 1472 2490 . ? . description=dust scaffold_1324 ensembl protein_coding_gene 805 1239 . - . ID=Physo126652;biotype=protein_coding;external_name=estExt_Genewise1.C_13240001;logic_name=jgi_physo1_1 scaffold_1324 ensembl transcript 805 1239 . - . ID=Physo126652;Parent=Physo126652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1324 . CDS 805 1230 . - 0 ID=Physo126652;Parent=Physo126652;rank=1 scaffold_1324 . exon 805 1239 . - . ID=Physo126652.1;Parent=Physo126652;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1323 1 4190 scaffold_1323 . repeat_region 5 1858 . - . description=Polinton-1_PI scaffold_1323 . repeat_region 1864 2975 . ? . description=dust scaffold_1323 . repeat_region 3110 3383 . - . description=Polinton-1_PI scaffold_1323 . repeat_region 3437 3503 . + . description=Polinton-1_PI scaffold_1323 . repeat_region 3526 3703 . + . description=Polinton-1_PI scaffold_1323 ensembl protein_coding_gene 258 3239 . - . ID=Physo145472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13230001;logic_name=jgi_physo1_1 scaffold_1323 ensembl transcript 258 3239 . - . ID=Physo145472;Parent=Physo145472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1323 . exon 258 390 . - . ID=Physo145472.7;Parent=Physo145472;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_1323 . CDS 260 390 . - 0 ID=Physo145472;Parent=Physo145472;rank=5 scaffold_1323 . CDS 436 471 . - 0 ID=Physo145472;Parent=Physo145472;rank=4 scaffold_1323 . exon 436 471 . - . ID=Physo145472.6;Parent=Physo145472;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1323 . CDS 571 1136 . - 0 ID=Physo145472;Parent=Physo145472;rank=3 scaffold_1323 . exon 571 1136 . - . ID=Physo145472.5;Parent=Physo145472;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1323 . CDS 1257 1461 . - 0 ID=Physo145472;Parent=Physo145472;rank=2 scaffold_1323 . exon 1257 1461 . - . ID=Physo145472.4;Parent=Physo145472;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1323 . CDS 1482 1785 . - 0 ID=Physo145472;Parent=Physo145472;rank=1 scaffold_1323 . exon 1482 1824 . - . ID=Physo145472.3;Parent=Physo145472;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=3 scaffold_1323 . exon 2978 3130 . - . ID=Physo145472.2;Parent=Physo145472;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_1323 . exon 3163 3239 . - . ID=Physo145472.1;Parent=Physo145472;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1369 1 4191 scaffold_1369 . biological_region 1633 1635 0.999 + . logic_name=eponine scaffold_1369 . repeat_region 1762 3203 . ? . description=dust scaffold_1369 . repeat_region 3922 3957 . ? . description=trf scaffold_1369 . repeat_region 4018 4070 . ? . description=trf scaffold_1369 . repeat_region 4018 4070 . ? . description=trf scaffold_1369 ensembl protein_coding_gene 20 3804 . - . ID=Physo145488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13690001;logic_name=jgi_physo1_1 scaffold_1369 ensembl transcript 20 3804 . - . ID=Physo145488;Parent=Physo145488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1369 . CDS 20 1711 . - 0 ID=Physo145488;Parent=Physo145488;rank=2 scaffold_1369 . exon 20 1711 . - . ID=Physo145488.2;Parent=Physo145488;constitutive=1;rank=2 scaffold_1369 . CDS 3208 3804 . - 0 ID=Physo145488;Parent=Physo145488;rank=1 scaffold_1369 . exon 3208 3804 . - . ID=Physo145488.1;Parent=Physo145488;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1156 1 4195 scaffold_1156 . biological_region 287 295 0.999 - . logic_name=eponine scaffold_1156 . biological_region 903 906 0.999 + . logic_name=eponine scaffold_1156 . biological_region 1092 1096 0.999 - . logic_name=eponine scaffold_1156 . repeat_region 1200 2297 . ? . description=dust scaffold_1156 . repeat_region 3278 3322 . ? . description=trf scaffold_1156 . biological_region 3313 3316 0.999 + . logic_name=eponine scaffold_1156 . biological_region 3328 3330 0.999 + . logic_name=eponine scaffold_1156 . biological_region 3340 3345 0.999 + . logic_name=eponine scaffold_1156 . biological_region 3358 3361 0.999 + . logic_name=eponine scaffold_1156 . biological_region 3362 3365 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1321 1 4196 scaffold_1321 . repeat_region 44 54 . ? . description=dust scaffold_1321 . repeat_region 1418 2358 . ? . description=dust scaffold_1321 . repeat_region 2964 2976 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1320 1 4198 scaffold_1320 . repeat_region 1452 2381 . ? . description=dust scaffold_1320 . biological_region 2569 2569 0.999 - . logic_name=eponine scaffold_1320 . biological_region 2598 2602 0.999 + . logic_name=eponine scaffold_1320 . biological_region 2736 2742 0.999 - . logic_name=eponine scaffold_1320 . repeat_region 2957 3007 . ? . description=trf scaffold_1320 . repeat_region 3900 3985 . ? . description=trf scaffold_1320 . repeat_region 3900 3985 . ? . description=trf scaffold_1320 . biological_region 3991 3993 0.999 - . logic_name=eponine scaffold_1320 . repeat_region 4097 4140 . ? . description=trf scaffold_1320 . repeat_region 4114 4158 . ? . description=trf scaffold_1320 . biological_region 4137 4139 0.999 + . logic_name=eponine scaffold_1320 . biological_region 4139 4147 0.999 - . logic_name=eponine scaffold_1320 . biological_region 4166 4171 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1318 1 4199 scaffold_1318 . repeat_region 1428 2436 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1317 1 4200 scaffold_1317 . repeat_region 1598 3138 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1319 1 4203 scaffold_1319 . repeat_region 8 16 . ? . description=dust scaffold_1319 . repeat_region 2474 2487 . ? . description=dust scaffold_1319 . repeat_region 2816 2838 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1316 1 4205 scaffold_1316 . biological_region 309 315 0.999 - . logic_name=eponine scaffold_1316 . repeat_region 735 1179 . - . description=GypsyPi-1c_I-int scaffold_1316 . repeat_region 1221 1307 . ? . description=trf scaffold_1316 . repeat_region 1523 2944 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1315 1 4210 scaffold_1315 . biological_region 1437 1443 0.999 + . logic_name=eponine scaffold_1315 . biological_region 1518 1523 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1308 1 4213 scaffold_1308 . repeat_region 3 1479 . - . description=GypsyPi-1c_I-int scaffold_1308 . biological_region 296 298 0.999 + . logic_name=eponine scaffold_1308 . repeat_region 1480 3344 . ? . description=dust scaffold_1308 . repeat_region 3346 4211 . - . description=GypsyPi-1c_I-int scaffold_1308 . biological_region 3776 3778 0.999 + . logic_name=eponine scaffold_1308 . biological_region 3794 3798 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1313 1 4215 scaffold_1313 . biological_region 433 436 0.999 + . logic_name=eponine scaffold_1313 . biological_region 489 490 0.999 + . logic_name=eponine scaffold_1313 . biological_region 511 518 0.999 + . logic_name=eponine scaffold_1313 . biological_region 541 545 0.999 - . logic_name=eponine scaffold_1313 . biological_region 603 606 0.999 - . logic_name=eponine scaffold_1313 . biological_region 617 618 0.999 + . logic_name=eponine scaffold_1313 . biological_region 642 647 0.999 - . logic_name=eponine scaffold_1313 . biological_region 763 765 0.999 + . logic_name=eponine scaffold_1313 . repeat_region 1027 1800 . ? . description=dust scaffold_1313 . repeat_region 1853 1892 . ? . description=trf scaffold_1313 . biological_region 2109 2112 0.999 - . logic_name=eponine scaffold_1313 . biological_region 2140 2144 0.999 - . logic_name=eponine scaffold_1313 . repeat_region 2318 2336 . ? . description=dust scaffold_1313 . biological_region 2398 2402 0.999 + . logic_name=eponine scaffold_1313 . biological_region 2457 2460 0.999 - . logic_name=eponine scaffold_1313 . biological_region 2726 2732 0.999 + . logic_name=eponine scaffold_1313 . biological_region 3150 3155 0.999 + . logic_name=eponine scaffold_1313 . repeat_region 3159 3200 . ? . description=trf scaffold_1313 . biological_region 3168 3173 0.999 - . logic_name=eponine scaffold_1313 . biological_region 3252 3258 0.999 + . logic_name=eponine scaffold_1313 . biological_region 3260 3262 0.999 - . logic_name=eponine scaffold_1313 . biological_region 3290 3291 0.999 - . logic_name=eponine scaffold_1313 . biological_region 3310 3311 0.999 - . logic_name=eponine scaffold_1313 . biological_region 3335 3338 0.999 - . logic_name=eponine scaffold_1313 . repeat_region 3343 3386 . ? . description=trf scaffold_1313 . biological_region 3689 3689 0.999 - . logic_name=eponine scaffold_1313 ensembl protein_coding_gene 3663 4204 . - . ID=Physo145471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13130001;logic_name=jgi_physo1_1 scaffold_1313 ensembl transcript 3663 4204 . - . ID=Physo145471;Parent=Physo145471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1313 . exon 3663 3682 . - . ID=Physo145471.2;Parent=Physo145471;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_1313 . CDS 3664 3682 . - 0 ID=Physo145471;Parent=Physo145471;rank=2 scaffold_1313 . CDS 3759 4204 . - 0 ID=Physo145471;Parent=Physo145471;rank=1 scaffold_1313 . exon 3759 4204 . - . ID=Physo145471.1;Parent=Physo145471;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1314 1 4215 scaffold_1314 . biological_region 838 840 0.999 - . logic_name=eponine scaffold_1314 . repeat_region 1094 2340 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1311 1 4216 scaffold_1311 . repeat_region 1682 3281 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1312 1 4217 scaffold_1312 . repeat_region 1656 3339 . ? . description=dust scaffold_1312 . repeat_region 3462 3748 . ? . description=trf scaffold_1312 . repeat_region 3783 3806 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1322 1 4222 scaffold_1322 . repeat_region 992 2571 . ? . description=dust scaffold_1322 . repeat_region 3050 3058 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1307 1 4223 scaffold_1307 . repeat_region 1566 3216 . ? . description=dust scaffold_1307 . repeat_region 3834 4223 . ? . description=trf scaffold_1307 . biological_region 4077 4080 0.999 + . logic_name=eponine scaffold_1307 . biological_region 4208 4209 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1575 1 4229 scaffold_1575 . repeat_region 1682 2638 . ? . description=dust scaffold_1575 . repeat_region 2674 4225 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1305 1 4230 scaffold_1305 . biological_region 1216 1218 0.999 - . logic_name=eponine scaffold_1305 . repeat_region 1690 2395 . ? . description=dust scaffold_1305 . biological_region 2891 2892 0.999 - . logic_name=eponine scaffold_1305 ensembl protein_coding_gene 38 3512 . + . ID=Physo145468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13050001;logic_name=jgi_physo1_1 scaffold_1305 ensembl transcript 38 3512 . + . ID=Physo145468;Parent=Physo145468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1305 . CDS 38 1663 . + 0 ID=Physo145468;Parent=Physo145468;rank=1 scaffold_1305 . exon 38 1663 . + . ID=Physo145468.1;Parent=Physo145468;constitutive=1;rank=1 scaffold_1305 . CDS 2435 2658 . + 0 ID=Physo145468;Parent=Physo145468;rank=2 scaffold_1305 . exon 2435 2658 . + . ID=Physo145468.2;Parent=Physo145468;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1305 . CDS 2707 2904 . + 0 ID=Physo145468;Parent=Physo145468;rank=3 scaffold_1305 . exon 2707 2904 . + . ID=Physo145468.3;Parent=Physo145468;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1305 . CDS 2972 3512 . + 0 ID=Physo145468;Parent=Physo145468;rank=4 scaffold_1305 . exon 2972 3512 . + . ID=Physo145468.4;Parent=Physo145468;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1303 1 4232 scaffold_1303 . repeat_region 660 990 . + . description=GypsyPi-1c_I-int scaffold_1303 . biological_region 1135 1139 0.999 - . logic_name=eponine scaffold_1303 . repeat_region 1395 1420 . ? . description=trf scaffold_1303 . biological_region 1469 1472 0.999 + . logic_name=eponine scaffold_1303 . repeat_region 1607 3355 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1302 1 4235 scaffold_1302 . repeat_region 1195 2257 . ? . description=dust scaffold_1302 . biological_region 3845 3847 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1297 1 4236 scaffold_1297 . repeat_region 1411 2441 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1301 1 4236 scaffold_1301 . repeat_region 2134 3421 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1304 1 4236 scaffold_1304 . repeat_region 1315 1886 . ? . description=dust scaffold_1304 . repeat_region 3126 3248 . ? . description=trf scaffold_1304 . repeat_region 3699 3712 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1298 1 4240 scaffold_1298 . repeat_region 875 925 . ? . description=trf scaffold_1298 . biological_region 1229 1231 0.999 - . logic_name=eponine scaffold_1298 . repeat_region 1316 2758 . ? . description=dust scaffold_1298 . biological_region 3123 3127 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1299 1 4240 scaffold_1299 . repeat_region 10 1494 . + . description=Polinton-1_PI scaffold_1299 . repeat_region 1495 2786 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1294 1 4249 scaffold_1294 . repeat_region 99 122 . ? . description=trf scaffold_1294 . biological_region 172 178 0.999 + . logic_name=eponine scaffold_1294 . biological_region 197 201 0.999 - . logic_name=eponine scaffold_1294 . biological_region 632 634 0.999 + . logic_name=eponine scaffold_1294 . repeat_region 2247 3291 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1291 1 4259 scaffold_1291 . repeat_region 82 179 . ? . description=trf scaffold_1291 . repeat_region 145 199 . ? . description=trf scaffold_1291 . repeat_region 179 234 . ? . description=trf scaffold_1291 . biological_region 1792 1794 0.999 - . logic_name=eponine scaffold_1291 . biological_region 1823 1828 0.999 - . logic_name=eponine scaffold_1291 . biological_region 1853 1856 0.999 - . logic_name=eponine scaffold_1291 . repeat_region 2187 2212 . ? . description=trf scaffold_1291 . biological_region 2190 2193 0.999 + . logic_name=eponine scaffold_1291 . biological_region 2208 2211 0.999 + . logic_name=eponine scaffold_1291 . biological_region 2340 2342 0.999 + . logic_name=eponine scaffold_1291 . biological_region 3009 3014 0.999 + . logic_name=eponine scaffold_1291 . biological_region 3042 3048 0.999 + . logic_name=eponine scaffold_1291 . biological_region 3061 3064 0.999 - . logic_name=eponine scaffold_1291 . biological_region 3064 3068 0.999 + . logic_name=eponine scaffold_1291 . biological_region 3117 3118 0.999 - . logic_name=eponine scaffold_1291 . biological_region 3166 3169 0.999 - . logic_name=eponine scaffold_1291 . biological_region 3358 3359 0.999 - . logic_name=eponine scaffold_1291 . biological_region 3863 3866 0.999 + . logic_name=eponine scaffold_1291 . biological_region 3880 3883 0.999 + . logic_name=eponine scaffold_1291 ensembl protein_coding_gene 2212 3593 . + . ID=Physo145464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12910001;logic_name=jgi_physo1_1 scaffold_1291 ensembl transcript 2212 3593 . + . ID=Physo145464;Parent=Physo145464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1291 . CDS 2212 3330 . + 0 ID=Physo145464;Parent=Physo145464;rank=1 scaffold_1291 . exon 2212 3593 . + . ID=Physo145464.1;Parent=Physo145464;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1295 1 4263 scaffold_1295 . biological_region 1699 1702 0.999 - . logic_name=eponine scaffold_1295 . repeat_region 2091 3170 . ? . description=dust scaffold_1295 ensembl protein_coding_gene 1483 1833 . - . ID=Physo109749;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_12950001;logic_name=jgi_physo1_1 scaffold_1295 ensembl transcript 1483 1833 . - . ID=Physo109749;Parent=Physo109749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1295 . CDS 1483 1833 . - 0 ID=Physo109749;Parent=Physo109749;rank=1 scaffold_1295 . exon 1483 1833 . - . ID=Physo109749.1;Parent=Physo109749;constitutive=1;rank=1 scaffold_1295 ensembl protein_coding_gene 34 1350 . + . ID=Physo145465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12950001;logic_name=jgi_physo1_1 scaffold_1295 ensembl transcript 34 1350 . + . ID=Physo145465;Parent=Physo145465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1295 . exon 34 158 . + . ID=Physo145465.1;Parent=Physo145465;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1295 . CDS 129 158 . + 0 ID=Physo145465;Parent=Physo145465;rank=1 scaffold_1295 . CDS 245 434 . + 0 ID=Physo145465;Parent=Physo145465;rank=2 scaffold_1295 . exon 245 434 . + . ID=Physo145465.2;Parent=Physo145465;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1295 . CDS 503 636 . + 0 ID=Physo145465;Parent=Physo145465;rank=3 scaffold_1295 . exon 503 636 . + . ID=Physo145465.3;Parent=Physo145465;constitutive=1;ensembl_phase=1;rank=3 scaffold_1295 . CDS 822 904 . + 0 ID=Physo145465;Parent=Physo145465;rank=4 scaffold_1295 . exon 822 904 . + . ID=Physo145465.4;Parent=Physo145465;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1295 . CDS 984 1350 . + 0 ID=Physo145465;Parent=Physo145465;rank=5 scaffold_1295 . exon 984 1350 . + . ID=Physo145465.5;Parent=Physo145465;constitutive=1;ensembl_phase=2;rank=5 ##gff-version 3 ##sequence-region scaffold_1499 1 4265 scaffold_1499 . repeat_region 1251 3111 . ? . description=dust scaffold_1499 . repeat_region 3200 3238 . ? . description=dust scaffold_1499 . repeat_region 3200 3238 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1402 1 4267 scaffold_1402 . biological_region 171 172 0.999 - . logic_name=eponine scaffold_1402 . repeat_region 188 279 . ? . description=trf scaffold_1402 . repeat_region 1786 3499 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1288 1 4272 scaffold_1288 . repeat_region 1 445 . - . description=Polinton-1_PI scaffold_1288 . repeat_region 638 1393 . - . description=Polinton-1_PI scaffold_1288 . repeat_region 1394 2735 . ? . description=dust scaffold_1288 . repeat_region 2743 4272 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1306 1 4277 scaffold_1306 . repeat_region 893 942 . ? . description=dust scaffold_1306 . repeat_region 1534 1598 . ? . description=trf scaffold_1306 . repeat_region 2023 2935 . ? . description=dust scaffold_1306 ensembl protein_coding_gene 3823 4212 . + . ID=Physo145469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13060001;logic_name=jgi_physo1_1 scaffold_1306 ensembl transcript 3823 4212 . + . ID=Physo145469;Parent=Physo145469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1306 . CDS 3823 4212 . + 0 ID=Physo145469;Parent=Physo145469;rank=1 scaffold_1306 . exon 3823 4212 . + . ID=Physo145469.1;Parent=Physo145469;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1286 1 4279 scaffold_1286 . repeat_region 71 590 . + . description=GypsyPi-1c_I-int scaffold_1286 . repeat_region 713 720 . ? . description=dust scaffold_1286 . repeat_region 1053 2050 . ? . description=dust scaffold_1286 ensembl protein_coding_gene 2279 2828 . - . ID=Physo126621;biotype=protein_coding;external_name=estExt_Genewise1.C_12860002;logic_name=jgi_physo1_1 scaffold_1286 ensembl transcript 2279 2828 . - . ID=Physo126621;Parent=Physo126621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1286 . exon 2279 2828 . - . ID=Physo126621.1;Parent=Physo126621;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1286 . CDS 2523 2828 . - 0 ID=Physo126621;Parent=Physo126621;rank=1 scaffold_1286 ensembl protein_coding_gene 83 902 . + . ID=Physo145460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12860001;logic_name=jgi_physo1_1 scaffold_1286 ensembl transcript 83 902 . + . ID=Physo145460;Parent=Physo145460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1286 . CDS 83 855 . + 0 ID=Physo145460;Parent=Physo145460;rank=1 scaffold_1286 . exon 83 855 . + . ID=Physo145460.1;Parent=Physo145460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1286 . CDS 896 902 . + 0 ID=Physo145460;Parent=Physo145460;rank=2 scaffold_1286 . exon 896 902 . + . ID=Physo145460.2;Parent=Physo145460;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1284 1 4283 scaffold_1284 . repeat_region 197 254 . ? . description=trf scaffold_1284 . biological_region 232 232 0.999 - . logic_name=eponine scaffold_1284 . biological_region 251 252 0.999 - . logic_name=eponine scaffold_1284 . biological_region 307 311 0.999 - . logic_name=eponine scaffold_1284 . biological_region 477 482 0.999 - . logic_name=eponine scaffold_1284 . biological_region 748 749 0.999 - . logic_name=eponine scaffold_1284 . biological_region 1505 1508 0.999 - . logic_name=eponine scaffold_1284 . biological_region 1553 1553 0.999 - . logic_name=eponine scaffold_1284 . repeat_region 2009 2938 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1285 1 4284 scaffold_1285 . biological_region 28 28 0.999 + . logic_name=eponine scaffold_1285 . biological_region 53 55 0.999 + . logic_name=eponine scaffold_1285 . biological_region 263 266 0.999 - . logic_name=eponine scaffold_1285 . biological_region 1029 1034 0.999 + . logic_name=eponine scaffold_1285 . biological_region 1095 1097 0.999 + . logic_name=eponine scaffold_1285 . biological_region 1161 1164 0.999 + . logic_name=eponine scaffold_1285 . biological_region 1514 1517 0.999 + . logic_name=eponine scaffold_1285 . repeat_region 1619 2473 . ? . description=dust scaffold_1285 . biological_region 3309 3310 0.999 + . logic_name=eponine scaffold_1285 . biological_region 3330 3331 0.999 - . logic_name=eponine scaffold_1285 . biological_region 3687 3692 0.999 - . logic_name=eponine scaffold_1285 . repeat_region 3851 3892 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1283 1 4289 scaffold_1283 . repeat_region 1193 1935 . ? . description=dust scaffold_1283 . repeat_region 2271 2322 . ? . description=trf scaffold_1283 . repeat_region 3341 3378 . ? . description=trf scaffold_1283 . repeat_region 3341 3390 . ? . description=trf scaffold_1283 . biological_region 3969 3972 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1281 1 4294 scaffold_1281 . repeat_region 577 613 . ? . description=dust scaffold_1281 . repeat_region 577 613 . ? . description=trf scaffold_1281 . repeat_region 1106 2198 . ? . description=dust scaffold_1281 . biological_region 4052 4053 0.999 + . logic_name=eponine scaffold_1281 . biological_region 4168 4171 0.999 + . logic_name=eponine scaffold_1281 . biological_region 4209 4211 0.999 - . logic_name=eponine scaffold_1281 ensembl protein_coding_gene 2467 4278 . - . ID=Physo145459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12810001;logic_name=jgi_physo1_1 scaffold_1281 ensembl transcript 2467 4278 . - . ID=Physo145459;Parent=Physo145459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1281 . CDS 2467 4278 . - 0 ID=Physo145459;Parent=Physo145459;rank=1 scaffold_1281 . exon 2467 4278 . - . ID=Physo145459.1;Parent=Physo145459;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1282 1 4297 scaffold_1282 . repeat_region 2014 2874 . ? . description=dust scaffold_1282 . repeat_region 3748 3755 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1280 1 4302 scaffold_1280 . repeat_region 1269 2464 . ? . description=dust scaffold_1280 . biological_region 2971 2977 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1368 1 4306 scaffold_1368 . repeat_region 932 2747 . ? . description=dust scaffold_1368 . repeat_region 3495 3503 . ? . description=dust scaffold_1368 . biological_region 4014 4017 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1278 1 4309 scaffold_1278 . repeat_region 1461 3138 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1479 1 4309 scaffold_1479 . repeat_region 24 319 . - . description=Polinton-1_PI scaffold_1479 . repeat_region 393 1176 . - . description=Polinton-1_PI scaffold_1479 . repeat_region 1779 1995 . - . description=Polinton-1_PI scaffold_1479 . repeat_region 1793 1829 . ? . description=dust scaffold_1479 . repeat_region 1988 2063 . - . description=Polinton-1_PI scaffold_1479 . repeat_region 2064 3530 . ? . description=dust scaffold_1479 . repeat_region 3531 4309 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1276 1 4313 scaffold_1276 . repeat_region 962 2620 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1277 1 4313 scaffold_1277 . repeat_region 815 865 . ? . description=trf scaffold_1277 . repeat_region 815 893 . ? . description=dust scaffold_1277 . repeat_region 1544 3043 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1262 1 4315 scaffold_1262 . repeat_region 551 558 . ? . description=dust scaffold_1262 . repeat_region 973 980 . ? . description=dust scaffold_1262 . repeat_region 1231 2340 . ? . description=dust scaffold_1262 . repeat_region 3150 3194 . ? . description=trf scaffold_1262 . repeat_region 3151 3194 . ? . description=trf scaffold_1262 . repeat_region 3263 3275 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1275 1 4315 scaffold_1275 . biological_region 595 601 0.999 + . logic_name=eponine scaffold_1275 . biological_region 760 764 0.999 - . logic_name=eponine scaffold_1275 . biological_region 775 776 0.999 + . logic_name=eponine scaffold_1275 . repeat_region 1129 1156 . ? . description=trf scaffold_1275 . biological_region 1216 1220 0.999 + . logic_name=eponine scaffold_1275 . biological_region 1233 1240 0.999 - . logic_name=eponine scaffold_1275 . biological_region 1252 1253 0.999 + . logic_name=eponine scaffold_1275 . biological_region 1254 1259 0.999 - . logic_name=eponine scaffold_1275 . biological_region 1279 1283 0.999 - . logic_name=eponine scaffold_1275 . biological_region 1393 1397 0.999 + . logic_name=eponine scaffold_1275 . biological_region 1442 1447 0.999 + . logic_name=eponine scaffold_1275 . biological_region 1452 1453 0.999 - . logic_name=eponine scaffold_1275 . biological_region 1474 1474 0.999 + . logic_name=eponine scaffold_1275 . biological_region 1492 1496 0.999 - . logic_name=eponine scaffold_1275 . biological_region 1526 1530 0.999 + . logic_name=eponine scaffold_1275 . biological_region 1548 1550 0.999 + . logic_name=eponine scaffold_1275 . repeat_region 1675 2898 . ? . description=dust scaffold_1275 ensembl protein_coding_gene 81 3318 . - . ID=Physo145458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12750001;logic_name=jgi_physo1_1 scaffold_1275 ensembl transcript 81 3318 . - . ID=Physo145458;Parent=Physo145458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1275 . exon 81 1628 . - . ID=Physo145458.2;Parent=Physo145458;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_1275 . CDS 104 1628 . - 0 ID=Physo145458;Parent=Physo145458;rank=2 scaffold_1275 . CDS 3314 3318 . - 0 ID=Physo145458;Parent=Physo145458;rank=1 scaffold_1275 . exon 3314 3318 . - . ID=Physo145458.1;Parent=Physo145458;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1292 1 4316 scaffold_1292 . repeat_region 458 510 . ? . description=trf scaffold_1292 . repeat_region 465 510 . ? . description=trf scaffold_1292 . repeat_region 1089 1138 . ? . description=dust scaffold_1292 . repeat_region 2162 3408 . ? . description=dust scaffold_1292 . repeat_region 3427 4311 . + . description=GypsyPi-1c_I-int scaffold_1292 . biological_region 3584 3585 0.999 + . logic_name=eponine scaffold_1292 . biological_region 3842 3844 0.999 + . logic_name=eponine scaffold_1292 . biological_region 3861 3862 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1287 1 4317 scaffold_1287 . repeat_region 8 81 . + . description=GypsyPi-1c_I-int scaffold_1287 . repeat_region 84 557 . + . description=GypsyPi-1c_I-int scaffold_1287 . repeat_region 581 1656 . ? . description=dust scaffold_1287 . repeat_region 1657 2051 . + . description=GypsyPi-1c_I-int scaffold_1287 . biological_region 2120 2120 0.999 + . logic_name=eponine scaffold_1287 . biological_region 2168 2171 0.999 + . logic_name=eponine scaffold_1287 . repeat_region 2402 2750 . + . description=GypsyPi-1c_I-int scaffold_1287 . biological_region 2931 2936 0.999 - . logic_name=eponine scaffold_1287 . repeat_region 3062 3384 . + . description=GypsyPi-1c_I-int scaffold_1287 . biological_region 3129 3132 0.999 - . logic_name=eponine scaffold_1287 . repeat_region 3506 3688 . + . description=GypsyPi-1c_LTR scaffold_1287 ensembl protein_coding_gene 161 382 . + . ID=Physo126622;biotype=protein_coding;external_name=estExt_Genewise1.C_12870001;logic_name=jgi_physo1_1 scaffold_1287 ensembl transcript 161 382 . + . ID=Physo126622;Parent=Physo126622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1287 . exon 161 382 . + . ID=Physo126622.1;Parent=Physo126622;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1287 . CDS 179 382 . + 0 ID=Physo126622;Parent=Physo126622;rank=1 scaffold_1287 ensembl protein_coding_gene 1860 3198 . - . ID=Physo145461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12870001;logic_name=jgi_physo1_1 scaffold_1287 ensembl transcript 1860 3198 . - . ID=Physo145461;Parent=Physo145461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1287 . CDS 1860 1865 . - 0 ID=Physo145461;Parent=Physo145461;rank=3 scaffold_1287 . exon 1860 1865 . - . ID=Physo145461.3;Parent=Physo145461;constitutive=1;rank=3 scaffold_1287 . CDS 1989 2653 . - 0 ID=Physo145461;Parent=Physo145461;rank=2 scaffold_1287 . exon 1989 2653 . - . ID=Physo145461.2;Parent=Physo145461;constitutive=1;ensembl_phase=1;rank=2 scaffold_1287 . CDS 2901 3198 . - 0 ID=Physo145461;Parent=Physo145461;rank=1 scaffold_1287 . exon 2901 3198 . - . ID=Physo145461.1;Parent=Physo145461;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1289 1 4317 scaffold_1289 . repeat_region 1021 1491 . ? . description=dust scaffold_1289 . repeat_region 3354 3403 . ? . description=dust scaffold_1289 . biological_region 4240 4240 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1274 1 4322 scaffold_1274 . repeat_region 772 1204 . ? . description=dust scaffold_1274 . repeat_region 3491 3663 . + . description=(ATCG)n scaffold_1274 . repeat_region 3494 3652 . ? . description=trf scaffold_1274 . repeat_region 3501 3661 . ? . description=trf scaffold_1274 . repeat_region 3511 3586 . ? . description=trf scaffold_1274 . repeat_region 3579 3660 . ? . description=trf scaffold_1274 . biological_region 3639 3644 0.999 - . logic_name=eponine scaffold_1274 . biological_region 3666 3671 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1273 1 4323 scaffold_1273 . biological_region 465 467 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1296 1 4324 scaffold_1296 . repeat_region 1088 2259 . ? . description=dust scaffold_1296 ensembl protein_coding_gene 3276 4324 . + . ID=Physo145467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12960001;logic_name=jgi_physo1_1 scaffold_1296 ensembl transcript 3276 4324 . + . ID=Physo145467;Parent=Physo145467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1296 . CDS 3276 3410 . + 0 ID=Physo145467;Parent=Physo145467;rank=1 scaffold_1296 . exon 3276 3410 . + . ID=Physo145467.1;Parent=Physo145467;constitutive=1;rank=1 scaffold_1296 . CDS 3553 3849 . + 0 ID=Physo145467;Parent=Physo145467;rank=2 scaffold_1296 . exon 3553 3849 . + . ID=Physo145467.2;Parent=Physo145467;constitutive=1;rank=2 scaffold_1296 . CDS 3944 4036 . + 0 ID=Physo145467;Parent=Physo145467;rank=3 scaffold_1296 . exon 3944 4036 . + . ID=Physo145467.3;Parent=Physo145467;constitutive=1;rank=3 scaffold_1296 . CDS 4112 4210 . + 0 ID=Physo145467;Parent=Physo145467;rank=4 scaffold_1296 . exon 4112 4210 . + . ID=Physo145467.4;Parent=Physo145467;constitutive=1;rank=4 scaffold_1296 . CDS 4289 4324 . + 0 ID=Physo145467;Parent=Physo145467;rank=5 scaffold_1296 . exon 4289 4324 . + . ID=Physo145467.5;Parent=Physo145467;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1272 1 4331 scaffold_1272 . repeat_region 4113 4143 . ? . description=trf scaffold_1272 . repeat_region 4148 4185 . ? . description=trf scaffold_1272 ensembl protein_coding_gene 69 1253 . + . ID=Physo109748;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_12720001;logic_name=jgi_physo1_1 scaffold_1272 ensembl transcript 69 1253 . + . ID=Physo109748;Parent=Physo109748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1272 . CDS 69 1253 . + 0 ID=Physo109748;Parent=Physo109748;rank=1 scaffold_1272 . exon 69 1253 . + . ID=Physo109748.1;Parent=Physo109748;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1310 1 4331 scaffold_1310 . repeat_region 905 2473 . ? . description=dust scaffold_1310 . repeat_region 4308 4331 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1271 1 4332 scaffold_1271 . repeat_region 1 261 . - . description=Polinton-1_PI scaffold_1271 . repeat_region 1137 2420 . ? . description=dust scaffold_1271 . repeat_region 2590 3660 . - . description=Polinton-1_PI scaffold_1271 . repeat_region 2767 2774 . ? . description=dust scaffold_1271 . repeat_region 2863 2870 . ? . description=dust scaffold_1271 . repeat_region 3672 3875 . - . description=Polinton-1_PI scaffold_1271 . repeat_region 4041 4282 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1270 1 4336 scaffold_1270 . repeat_region 38 229 . ? . description=trf scaffold_1270 . repeat_region 61 235 . ? . description=trf scaffold_1270 . biological_region 637 638 0.999 - . logic_name=eponine scaffold_1270 . biological_region 660 660 0.999 - . logic_name=eponine scaffold_1270 . biological_region 901 904 0.999 + . logic_name=eponine scaffold_1270 . biological_region 926 929 0.999 - . logic_name=eponine scaffold_1270 . biological_region 1033 1036 0.999 - . logic_name=eponine scaffold_1270 . repeat_region 1086 3084 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1269 1 4342 scaffold_1269 . repeat_region 1127 1192 . ? . description=trf scaffold_1269 . biological_region 2336 2339 0.999 - . logic_name=eponine scaffold_1269 . repeat_region 2397 2431 . ? . description=trf scaffold_1269 . biological_region 2419 2419 0.999 + . logic_name=eponine scaffold_1269 . biological_region 3149 3150 0.999 - . logic_name=eponine scaffold_1269 . repeat_region 4072 4116 . ? . description=trf scaffold_1269 ensembl protein_coding_gene 638 2166 . + . ID=Physo145455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12690001;logic_name=jgi_physo1_1 scaffold_1269 ensembl transcript 638 2166 . + . ID=Physo145455;Parent=Physo145455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1269 . CDS 638 641 . + 0 ID=Physo145455;Parent=Physo145455;rank=1 scaffold_1269 . exon 638 641 . + . ID=Physo145455.1;Parent=Physo145455;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1269 . CDS 1122 1270 . + 0 ID=Physo145455;Parent=Physo145455;rank=2 scaffold_1269 . exon 1122 1270 . + . ID=Physo145455.2;Parent=Physo145455;constitutive=1;ensembl_phase=1;rank=2 scaffold_1269 . CDS 1297 2166 . + 0 ID=Physo145455;Parent=Physo145455;rank=3 scaffold_1269 . exon 1297 2166 . + . ID=Physo145455.3;Parent=Physo145455;constitutive=1;rank=3 scaffold_1269 ensembl protein_coding_gene 2555 4200 . + . ID=Physo145456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12690002;logic_name=jgi_physo1_1 scaffold_1269 ensembl transcript 2555 4200 . + . ID=Physo145456;Parent=Physo145456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1269 . CDS 2555 3516 . + 0 ID=Physo145456;Parent=Physo145456;rank=1 scaffold_1269 . exon 2555 3516 . + . ID=Physo145456.1;Parent=Physo145456;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1269 . CDS 3685 3919 . + 0 ID=Physo145456;Parent=Physo145456;rank=2 scaffold_1269 . exon 3685 3919 . + . ID=Physo145456.2;Parent=Physo145456;constitutive=1;ensembl_phase=2;rank=2 scaffold_1269 . CDS 4015 4200 . + 0 ID=Physo145456;Parent=Physo145456;rank=3 scaffold_1269 . exon 4015 4200 . + . ID=Physo145456.3;Parent=Physo145456;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1268 1 4343 scaffold_1268 . repeat_region 1388 2428 . ? . description=dust scaffold_1268 . repeat_region 3136 3143 . ? . description=dust scaffold_1268 . repeat_region 3371 3379 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1266 1 4348 scaffold_1266 . repeat_region 443 458 . ? . description=dust scaffold_1266 . repeat_region 834 2327 . ? . description=dust scaffold_1266 . repeat_region 3124 3132 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1265 1 4356 scaffold_1265 . biological_region 195 196 0.999 + . logic_name=eponine scaffold_1265 . repeat_region 2446 2699 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1264 1 4358 scaffold_1264 . repeat_region 6 1116 . + . description=Polinton-1_PI scaffold_1264 . repeat_region 1470 2160 . ? . description=dust scaffold_1264 . repeat_region 2165 2821 . + . description=Polinton-1_PI scaffold_1264 . repeat_region 2882 4358 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1261 1 4368 scaffold_1261 . biological_region 6 8 0.999 + . logic_name=eponine scaffold_1261 . repeat_region 369 419 . ? . description=trf scaffold_1261 . repeat_region 369 421 . ? . description=trf scaffold_1261 . repeat_region 482 519 . ? . description=trf scaffold_1261 . repeat_region 1596 2418 . ? . description=dust scaffold_1261 . repeat_region 3868 3918 . ? . description=trf scaffold_1261 . repeat_region 3868 3920 . ? . description=trf scaffold_1261 . repeat_region 3981 4018 . ? . description=trf scaffold_1261 . repeat_region 4196 4246 . ? . description=trf scaffold_1261 . repeat_region 4196 4248 . ? . description=trf scaffold_1261 . repeat_region 4309 4346 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1267 1 4370 scaffold_1267 . biological_region 389 389 0.999 - . logic_name=eponine scaffold_1267 . repeat_region 876 911 . ? . description=trf scaffold_1267 . repeat_region 916 960 . ? . description=trf scaffold_1267 . repeat_region 1138 2708 . ? . description=dust scaffold_1267 . biological_region 3530 3534 0.999 - . logic_name=eponine scaffold_1267 . biological_region 3756 3756 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1309 1 4370 scaffold_1309 . repeat_region 912 923 . ? . description=dust scaffold_1309 . repeat_region 1121 2303 . ? . description=dust scaffold_1309 . biological_region 3378 3380 0.999 - . logic_name=eponine scaffold_1309 ensembl protein_coding_gene 2304 4085 . + . ID=Physo145470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13090001;logic_name=jgi_physo1_1 scaffold_1309 ensembl transcript 2304 4085 . + . ID=Physo145470;Parent=Physo145470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1309 . CDS 2304 2425 . + 0 ID=Physo145470;Parent=Physo145470;rank=1 scaffold_1309 . exon 2304 2425 . + . ID=Physo145470.1;Parent=Physo145470;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1309 . CDS 2488 2858 . + 0 ID=Physo145470;Parent=Physo145470;rank=2 scaffold_1309 . exon 2488 2858 . + . ID=Physo145470.2;Parent=Physo145470;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1309 . CDS 2974 4085 . + 0 ID=Physo145470;Parent=Physo145470;rank=3 scaffold_1309 . exon 2974 4085 . + . ID=Physo145470.3;Parent=Physo145470;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1260 1 4372 scaffold_1260 . repeat_region 1184 2047 . ? . description=dust scaffold_1260 . biological_region 2991 2996 0.999 + . logic_name=eponine scaffold_1260 . biological_region 3013 3014 0.999 - . logic_name=eponine scaffold_1260 . biological_region 3044 3049 0.999 - . logic_name=eponine scaffold_1260 . biological_region 3338 3340 0.999 - . logic_name=eponine scaffold_1260 . biological_region 3361 3365 0.999 + . logic_name=eponine scaffold_1260 . biological_region 3408 3409 0.999 - . logic_name=eponine scaffold_1260 . biological_region 3477 3484 0.999 - . logic_name=eponine scaffold_1260 ensembl protein_coding_gene 2505 3681 . + . ID=Physo145453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12600001;logic_name=jgi_physo1_1 scaffold_1260 ensembl transcript 2505 3681 . + . ID=Physo145453;Parent=Physo145453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1260 . CDS 2505 2542 . + 0 ID=Physo145453;Parent=Physo145453;rank=1 scaffold_1260 . exon 2505 2542 . + . ID=Physo145453.1;Parent=Physo145453;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1260 . CDS 2734 3159 . + 0 ID=Physo145453;Parent=Physo145453;rank=2 scaffold_1260 . exon 2734 3159 . + . ID=Physo145453.2;Parent=Physo145453;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1260 . CDS 3226 3280 . + 0 ID=Physo145453;Parent=Physo145453;rank=3 scaffold_1260 . exon 3226 3280 . + . ID=Physo145453.3;Parent=Physo145453;constitutive=1;ensembl_phase=2;rank=3 scaffold_1260 . CDS 3322 3527 . + 0 ID=Physo145453;Parent=Physo145453;rank=4 scaffold_1260 . exon 3322 3527 . + . ID=Physo145453.4;Parent=Physo145453;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1260 . CDS 3558 3570 . + 0 ID=Physo145453;Parent=Physo145453;rank=5 scaffold_1260 . exon 3558 3681 . + . ID=Physo145453.5;Parent=Physo145453;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_1260 ensembl protein_coding_gene 3648 4372 . - . ID=Physo145454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12600002;logic_name=jgi_physo1_1 scaffold_1260 ensembl transcript 3648 4372 . - . ID=Physo145454;Parent=Physo145454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1260 . exon 3648 4372 . - . ID=Physo145454.1;Parent=Physo145454;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1260 . CDS 3890 4360 . - 0 ID=Physo145454;Parent=Physo145454;rank=1 ##gff-version 3 ##sequence-region scaffold_1300 1 4376 scaffold_1300 . repeat_region 1084 1219 . ? . description=dust scaffold_1300 . repeat_region 1330 1378 . ? . description=trf scaffold_1300 . repeat_region 2155 3405 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1263 1 4378 scaffold_1263 . repeat_region 1548 2739 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1158 1 4379 scaffold_1158 . biological_region 358 359 0.999 + . logic_name=eponine scaffold_1158 . biological_region 366 368 0.999 - . logic_name=eponine scaffold_1158 . biological_region 535 536 0.999 + . logic_name=eponine scaffold_1158 . biological_region 609 613 0.999 - . logic_name=eponine scaffold_1158 . biological_region 631 634 0.999 - . logic_name=eponine scaffold_1158 . biological_region 776 782 0.999 - . logic_name=eponine scaffold_1158 . biological_region 1070 1072 0.999 - . logic_name=eponine scaffold_1158 . repeat_region 1896 1945 . ? . description=dust scaffold_1158 . biological_region 2150 2151 0.999 - . logic_name=eponine scaffold_1158 . biological_region 2312 2312 0.999 - . logic_name=eponine scaffold_1158 . biological_region 2885 2887 0.999 + . logic_name=eponine scaffold_1158 . repeat_region 3474 3523 . ? . description=dust scaffold_1158 . biological_region 3623 3625 0.999 + . logic_name=eponine scaffold_1158 . biological_region 3723 3727 0.999 - . logic_name=eponine scaffold_1158 . repeat_region 3939 3994 . ? . description=trf scaffold_1158 . biological_region 4233 4235 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1259 1 4382 scaffold_1259 . repeat_region 2084 3034 . ? . description=dust scaffold_1259 . repeat_region 3731 3738 . ? . description=dust scaffold_1259 . biological_region 3745 3745 0.999 - . logic_name=eponine scaffold_1259 . biological_region 3764 3766 0.999 - . logic_name=eponine scaffold_1259 . repeat_region 3817 3824 . ? . description=dust scaffold_1259 . repeat_region 3948 3979 . ? . description=trf scaffold_1259 . repeat_region 4113 4132 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1256 1 4385 scaffold_1256 . repeat_region 78 115 . ? . description=trf scaffold_1256 . repeat_region 170 876 . + . description=GypsyPi-1c_I-int scaffold_1256 . repeat_region 619 843 . ? . description=trf scaffold_1256 . repeat_region 1394 2296 . ? . description=dust scaffold_1256 . repeat_region 2465 2515 . ? . description=trf scaffold_1256 . repeat_region 3422 3726 . + . description=GypsyPi-1c_LTR scaffold_1256 ensembl protein_coding_gene 3740 3904 . + . ID=Physo126602;biotype=protein_coding;external_name=estExt_Genewise1.C_12560001;logic_name=jgi_physo1_1 scaffold_1256 ensembl transcript 3740 3904 . + . ID=Physo126602;Parent=Physo126602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1256 . CDS 3740 3904 . + 0 ID=Physo126602;Parent=Physo126602;rank=1 scaffold_1256 . exon 3740 3904 . + . ID=Physo126602.1;Parent=Physo126602;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1258 1 4386 scaffold_1258 . repeat_region 332 371 . ? . description=dust scaffold_1258 . repeat_region 1288 1388 . + . description=Polinton-1_PI scaffold_1258 . repeat_region 1439 2100 . ? . description=dust scaffold_1258 . repeat_region 2907 2949 . ? . description=trf scaffold_1258 . biological_region 3850 3851 0.999 + . logic_name=eponine scaffold_1258 . biological_region 4060 4060 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1253 1 4390 scaffold_1253 . biological_region 247 250 0.999 + . logic_name=eponine scaffold_1253 . biological_region 291 298 0.999 + . logic_name=eponine scaffold_1253 . biological_region 311 316 0.999 + . logic_name=eponine scaffold_1253 . biological_region 338 345 0.999 - . logic_name=eponine scaffold_1253 . biological_region 385 390 0.999 - . logic_name=eponine scaffold_1253 . biological_region 419 423 0.999 - . logic_name=eponine scaffold_1253 . biological_region 569 570 0.999 - . logic_name=eponine scaffold_1253 . biological_region 853 857 0.999 + . logic_name=eponine scaffold_1253 . biological_region 1412 1417 0.999 + . logic_name=eponine scaffold_1253 . repeat_region 1462 1514 . ? . description=trf scaffold_1253 . biological_region 1473 1477 0.999 + . logic_name=eponine scaffold_1253 . biological_region 1552 1553 0.999 - . logic_name=eponine scaffold_1253 . biological_region 1927 1929 0.999 + . logic_name=eponine scaffold_1253 . repeat_region 2483 2552 . ? . description=trf scaffold_1253 . biological_region 2537 2541 0.999 + . logic_name=eponine scaffold_1253 . biological_region 2554 2556 0.999 - . logic_name=eponine scaffold_1253 . repeat_region 2948 3048 . ? . description=trf scaffold_1253 . repeat_region 2948 3049 . ? . description=trf scaffold_1253 . biological_region 2965 2972 0.999 + . logic_name=eponine scaffold_1253 . biological_region 3019 3022 0.999 - . logic_name=eponine scaffold_1253 . biological_region 3053 3058 0.999 - . logic_name=eponine scaffold_1253 . biological_region 3078 3080 0.999 + . logic_name=eponine scaffold_1253 . repeat_region 3177 3221 . ? . description=trf scaffold_1253 . biological_region 3199 3202 0.999 + . logic_name=eponine scaffold_1253 . biological_region 3203 3209 0.999 - . logic_name=eponine scaffold_1253 . biological_region 3232 3232 0.999 - . logic_name=eponine scaffold_1253 . biological_region 3244 3250 0.999 - . logic_name=eponine scaffold_1253 . biological_region 3466 3472 0.999 - . logic_name=eponine scaffold_1253 . biological_region 3509 3511 0.999 - . logic_name=eponine scaffold_1253 . biological_region 3550 3554 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1254 1 4391 scaffold_1254 . repeat_region 880 889 . ? . description=dust scaffold_1254 . repeat_region 1095 3405 . ? . description=dust scaffold_1254 . biological_region 4042 4042 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1255 1 4391 scaffold_1255 . repeat_region 1284 1298 . ? . description=dust scaffold_1255 . biological_region 3951 3957 0.999 + . logic_name=eponine scaffold_1255 ensembl protein_coding_gene 3805 4347 . - . ID=Physo145452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12550001;logic_name=jgi_physo1_1 scaffold_1255 ensembl transcript 3805 4347 . - . ID=Physo145452;Parent=Physo145452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1255 . CDS 3805 4131 . - 0 ID=Physo145452;Parent=Physo145452;rank=1 scaffold_1255 . exon 3805 4347 . - . ID=Physo145452.1;Parent=Physo145452;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1252 1 4398 scaffold_1252 . repeat_region 1154 2708 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1290 1 4404 scaffold_1290 . repeat_region 1220 1269 . ? . description=dust scaffold_1290 . repeat_region 2121 3134 . ? . description=dust scaffold_1290 . biological_region 3230 3231 0.999 + . logic_name=eponine scaffold_1290 . repeat_region 3848 3855 . ? . description=dust scaffold_1290 ensembl protein_coding_gene 301 1083 . - . ID=Physo145462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12900001;logic_name=jgi_physo1_1 scaffold_1290 ensembl transcript 301 1083 . - . ID=Physo145462;Parent=Physo145462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1290 . CDS 301 1083 . - 0 ID=Physo145462;Parent=Physo145462;rank=1 scaffold_1290 . exon 301 1083 . - . ID=Physo145462.1;Parent=Physo145462;constitutive=1;rank=1 scaffold_1290 ensembl protein_coding_gene 1593 3429 . + . ID=Physo145463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12900002;logic_name=jgi_physo1_1 scaffold_1290 ensembl transcript 1593 3429 . + . ID=Physo145463;Parent=Physo145463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1290 . CDS 1593 2059 . + 0 ID=Physo145463;Parent=Physo145463;rank=1 scaffold_1290 . exon 1593 2059 . + . ID=Physo145463.1;Parent=Physo145463;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1290 . CDS 3144 3429 . + 0 ID=Physo145463;Parent=Physo145463;rank=2 scaffold_1290 . exon 3144 3429 . + . ID=Physo145463.2;Parent=Physo145463;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1251 1 4405 scaffold_1251 . repeat_region 49 463 . + . description=GypsyPi-1c_I-int scaffold_1251 . repeat_region 864 1921 . ? . description=dust scaffold_1251 . biological_region 2778 2786 0.999 - . logic_name=eponine scaffold_1251 . biological_region 2815 2816 0.999 + . logic_name=eponine scaffold_1251 . repeat_region 2966 3188 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1250 1 4406 scaffold_1250 . biological_region 192 196 0.999 + . logic_name=eponine scaffold_1250 . repeat_region 1371 2636 . ? . description=dust scaffold_1250 . repeat_region 4024 4036 . ? . description=dust scaffold_1250 . repeat_region 4121 4192 . ? . description=trf scaffold_1250 . repeat_region 4177 4308 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1249 1 4409 scaffold_1249 . repeat_region 739 758 . ? . description=dust scaffold_1249 . repeat_region 739 758 . ? . description=trf scaffold_1249 . biological_region 1515 1516 0.999 - . logic_name=eponine scaffold_1249 . biological_region 1547 1551 0.999 - . logic_name=eponine scaffold_1249 . biological_region 1628 1633 0.999 + . logic_name=eponine scaffold_1249 . biological_region 1636 1640 0.999 - . logic_name=eponine scaffold_1249 . biological_region 1898 1900 0.999 - . logic_name=eponine scaffold_1249 . repeat_region 2369 2378 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1248 1 4414 scaffold_1248 . repeat_region 285 306 . ? . description=dust scaffold_1248 . repeat_region 285 306 . ? . description=trf scaffold_1248 . repeat_region 557 651 . ? . description=trf scaffold_1248 . biological_region 1013 1017 0.999 - . logic_name=eponine scaffold_1248 . repeat_region 1336 2627 . ? . description=dust scaffold_1248 . biological_region 2946 2952 0.999 + . logic_name=eponine scaffold_1248 . repeat_region 3011 3058 . ? . description=trf scaffold_1248 . repeat_region 3011 3064 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1247 1 4418 scaffold_1247 . repeat_region 862 2753 . ? . description=dust scaffold_1247 . repeat_region 3464 3471 . ? . description=dust scaffold_1247 ensembl protein_coding_gene 7 706 . - . ID=Physo145451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12470001;logic_name=jgi_physo1_1 scaffold_1247 ensembl transcript 7 706 . - . ID=Physo145451;Parent=Physo145451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1247 . exon 7 706 . - . ID=Physo145451.1;Parent=Physo145451;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1247 . CDS 8 706 . - 0 ID=Physo145451;Parent=Physo145451;rank=1 ##gff-version 3 ##sequence-region scaffold_1246 1 4420 scaffold_1246 . repeat_region 1482 2627 . ? . description=dust scaffold_1246 . repeat_region 4064 4073 . ? . description=dust scaffold_1246 . biological_region 4267 4271 0.999 - . logic_name=eponine scaffold_1246 ensembl protein_coding_gene 774 1376 . - . ID=Physo145450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12460001;logic_name=jgi_physo1_1 scaffold_1246 ensembl transcript 774 1376 . - . ID=Physo145450;Parent=Physo145450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1246 . CDS 774 1376 . - 0 ID=Physo145450;Parent=Physo145450;rank=1 scaffold_1246 . exon 774 1376 . - . ID=Physo145450.1;Parent=Physo145450;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1257 1 4422 scaffold_1257 . repeat_region 28 1412 . - . description=Polinton-1_PI scaffold_1257 . repeat_region 1630 2056 . - . description=Polinton-1_PI scaffold_1257 . repeat_region 2057 2628 . ? . description=dust scaffold_1257 . repeat_region 2630 4422 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1293 1 4428 scaffold_1293 . repeat_region 1182 1231 . ? . description=trf scaffold_1293 . repeat_region 1401 2439 . ? . description=dust scaffold_1293 ensembl protein_coding_gene 2975 3136 . + . ID=Physo126626;biotype=protein_coding;external_name=estExt_Genewise1.C_12930001;logic_name=jgi_physo1_1 scaffold_1293 ensembl transcript 2975 3136 . + . ID=Physo126626;Parent=Physo126626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1293 . exon 2975 3136 . + . ID=Physo126626.1;Parent=Physo126626;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1293 . CDS 2990 3136 . + 0 ID=Physo126626;Parent=Physo126626;rank=1 ##gff-version 3 ##sequence-region scaffold_1245 1 4429 scaffold_1245 . repeat_region 410 646 . ? . description=trf scaffold_1245 . repeat_region 967 992 . ? . description=trf scaffold_1245 . repeat_region 1200 3597 . ? . description=dust scaffold_1245 ensembl protein_coding_gene 264 967 . + . ID=Physo145449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12450001;logic_name=jgi_physo1_1 scaffold_1245 ensembl transcript 264 967 . + . ID=Physo145449;Parent=Physo145449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1245 . exon 264 967 . + . ID=Physo145449.1;Parent=Physo145449;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1245 . CDS 557 682 . + 0 ID=Physo145449;Parent=Physo145449;rank=1 ##gff-version 3 ##sequence-region scaffold_1349 1 4429 scaffold_1349 . repeat_region 496 521 . ? . description=trf scaffold_1349 . repeat_region 1069 2153 . ? . description=dust scaffold_1349 . biological_region 2245 2249 0.999 + . logic_name=eponine scaffold_1349 . biological_region 2276 2280 0.999 - . logic_name=eponine scaffold_1349 . biological_region 2411 2415 0.999 - . logic_name=eponine scaffold_1349 ensembl protein_coding_gene 2737 4248 . + . ID=Physo109750;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_13490001;logic_name=jgi_physo1_1 scaffold_1349 ensembl transcript 2737 4248 . + . ID=Physo109750;Parent=Physo109750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1349 . CDS 2737 4248 . + 0 ID=Physo109750;Parent=Physo109750;rank=1 scaffold_1349 . exon 2737 4248 . + . ID=Physo109750.1;Parent=Physo109750;constitutive=1;rank=1 scaffold_1349 ensembl protein_coding_gene 86 2307 . + . ID=Physo145482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_13490001;logic_name=jgi_physo1_1 scaffold_1349 ensembl transcript 86 2307 . + . ID=Physo145482;Parent=Physo145482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1349 . CDS 86 1063 . + 0 ID=Physo145482;Parent=Physo145482;rank=1 scaffold_1349 . exon 86 1063 . + . ID=Physo145482.1;Parent=Physo145482;constitutive=1;rank=1 scaffold_1349 . CDS 2161 2307 . + 0 ID=Physo145482;Parent=Physo145482;rank=2 scaffold_1349 . exon 2161 2307 . + . ID=Physo145482.2;Parent=Physo145482;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1243 1 4432 scaffold_1243 . biological_region 123 126 0.999 + . logic_name=eponine scaffold_1243 . repeat_region 1527 2788 . ? . description=dust scaffold_1243 . repeat_region 2834 4426 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1244 1 4433 scaffold_1244 . biological_region 2451 2452 0.999 - . logic_name=eponine scaffold_1244 . repeat_region 2775 2844 . ? . description=trf scaffold_1244 . biological_region 4037 4039 0.999 - . logic_name=eponine scaffold_1244 . biological_region 4079 4081 0.999 + . logic_name=eponine scaffold_1244 . biological_region 4171 4177 0.999 - . logic_name=eponine scaffold_1244 . biological_region 4251 4252 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1241 1 4440 scaffold_1241 . biological_region 520 522 0.999 + . logic_name=eponine scaffold_1241 . repeat_region 880 3059 . ? . description=dust scaffold_1241 . biological_region 3446 3447 0.999 - . logic_name=eponine scaffold_1241 . biological_region 4364 4366 0.999 - . logic_name=eponine scaffold_1241 ensembl protein_coding_gene 3125 3805 . + . ID=Physo109747;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_12410001;logic_name=jgi_physo1_1 scaffold_1241 ensembl transcript 3125 3805 . + . ID=Physo109747;Parent=Physo109747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1241 . CDS 3125 3805 . + 0 ID=Physo109747;Parent=Physo109747;rank=1 scaffold_1241 . exon 3125 3805 . + . ID=Physo109747.1;Parent=Physo109747;constitutive=1;rank=1 scaffold_1241 ensembl protein_coding_gene 4049 4426 . + . ID=Physo126594;biotype=protein_coding;external_name=estExt_Genewise1.C_12410002;logic_name=jgi_physo1_1 scaffold_1241 ensembl transcript 4049 4426 . + . ID=Physo126594;Parent=Physo126594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1241 . exon 4049 4426 . + . ID=Physo126594.1;Parent=Physo126594;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1241 . CDS 4050 4361 . + 0 ID=Physo126594;Parent=Physo126594;rank=1 scaffold_1241 ensembl protein_coding_gene 302 765 . - . ID=Physo126595;biotype=protein_coding;external_name=estExt_Genewise1.C_12410003;logic_name=jgi_physo1_1 scaffold_1241 ensembl transcript 302 765 . - . ID=Physo126595;Parent=Physo126595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1241 . exon 302 373 . - . ID=Physo126595.2;Parent=Physo126595;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1241 . CDS 312 373 . - 0 ID=Physo126595;Parent=Physo126595;rank=2 scaffold_1241 . CDS 448 763 . - 0 ID=Physo126595;Parent=Physo126595;rank=1 scaffold_1241 . exon 448 765 . - . ID=Physo126595.1;Parent=Physo126595;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1238 1 4464 scaffold_1238 . repeat_region 6 102 . - . description=Polinton-1_PI scaffold_1238 . repeat_region 1849 2501 . ? . description=dust scaffold_1238 . repeat_region 3511 3535 . ? . description=trf scaffold_1238 . repeat_region 3511 3536 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1237 1 4480 scaffold_1237 . repeat_region 2092 2481 . ? . description=dust scaffold_1237 . biological_region 2573 2577 0.999 + . logic_name=eponine scaffold_1237 . biological_region 2609 2609 0.999 - . logic_name=eponine scaffold_1237 . repeat_region 3432 4191 . - . description=GypsyPi-1c_I-int scaffold_1237 . biological_region 4026 4027 0.999 - . logic_name=eponine scaffold_1237 . biological_region 4294 4294 0.999 + . logic_name=eponine scaffold_1237 ensembl protein_coding_gene 3117 4401 . - . ID=Physo145445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12370001;logic_name=jgi_physo1_1 scaffold_1237 ensembl transcript 3117 4401 . - . ID=Physo145445;Parent=Physo145445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1237 . CDS 3117 3123 . - 0 ID=Physo145445;Parent=Physo145445;rank=2 scaffold_1237 . exon 3117 3123 . - . ID=Physo145445.2;Parent=Physo145445;constitutive=1;ensembl_phase=2;rank=2 scaffold_1237 . CDS 3164 4401 . - 0 ID=Physo145445;Parent=Physo145445;rank=1 scaffold_1237 . exon 3164 4401 . - . ID=Physo145445.1;Parent=Physo145445;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1279 1 4484 scaffold_1279 . repeat_region 579 587 . ? . description=dust scaffold_1279 . repeat_region 1637 3016 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1233 1 4493 scaffold_1233 . repeat_region 1341 1996 . ? . description=dust scaffold_1233 ensembl protein_coding_gene 276 1340 . + . ID=Physo126580;biotype=protein_coding;external_name=estExt_Genewise1.C_12330002;logic_name=jgi_physo1_1 scaffold_1233 ensembl transcript 276 1340 . + . ID=Physo126580;Parent=Physo126580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1233 . exon 276 1340 . + . ID=Physo126580.1;Parent=Physo126580;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1233 . CDS 309 1340 . + 0 ID=Physo126580;Parent=Physo126580;rank=1 ##gff-version 3 ##sequence-region scaffold_1232 1 4495 scaffold_1232 . biological_region 1121 1123 0.999 + . logic_name=eponine scaffold_1232 . repeat_region 2321 3041 . ? . description=dust scaffold_1232 ensembl protein_coding_gene 73 2236 . - . ID=Physo145441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12320001;logic_name=jgi_physo1_1 scaffold_1232 ensembl transcript 73 2236 . - . ID=Physo145441;Parent=Physo145441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1232 . CDS 73 1785 . - 0 ID=Physo145441;Parent=Physo145441;rank=2 scaffold_1232 . exon 73 1785 . - . ID=Physo145441.2;Parent=Physo145441;constitutive=1;rank=2 scaffold_1232 . CDS 1820 2236 . - 0 ID=Physo145441;Parent=Physo145441;rank=1 scaffold_1232 . exon 1820 2236 . - . ID=Physo145441.1;Parent=Physo145441;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1235 1 4499 scaffold_1235 . repeat_region 600 667 . ? . description=trf scaffold_1235 . repeat_region 2430 2852 . ? . description=dust scaffold_1235 . repeat_region 2947 2995 . ? . description=trf scaffold_1235 . repeat_region 3101 3142 . ? . description=trf scaffold_1235 . repeat_region 3456 3508 . ? . description=dust scaffold_1235 . repeat_region 3456 3508 . ? . description=trf scaffold_1235 ensembl protein_coding_gene 1292 1931 . + . ID=Physo126585;biotype=protein_coding;external_name=estExt_Genewise1.C_12350001;logic_name=jgi_physo1_1 scaffold_1235 ensembl transcript 1292 1931 . + . ID=Physo126585;Parent=Physo126585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1235 . CDS 1292 1459 . + 0 ID=Physo126585;Parent=Physo126585;rank=1 scaffold_1235 . exon 1292 1931 . + . ID=Physo126585.1;Parent=Physo126585;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1235 ensembl protein_coding_gene 1038 1280 . + . ID=Physo126586;biotype=protein_coding;external_name=estExt_Genewise1.C_12350002;logic_name=jgi_physo1_1 scaffold_1235 ensembl transcript 1038 1280 . + . ID=Physo126586;Parent=Physo126586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1235 . exon 1038 1280 . + . ID=Physo126586.1;Parent=Physo126586;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1235 . CDS 1054 1089 . + 0 ID=Physo126586;Parent=Physo126586;rank=1 ##gff-version 3 ##sequence-region scaffold_1231 1 4505 scaffold_1231 . biological_region 35 37 0.999 + . logic_name=eponine scaffold_1231 . repeat_region 1405 1412 . ? . description=dust scaffold_1231 . biological_region 2696 2697 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1239 1 4511 scaffold_1239 . repeat_region 141 814 . + . description=GypsyPi-1c_I-int scaffold_1239 . biological_region 361 362 0.999 + . logic_name=eponine scaffold_1239 . repeat_region 817 2575 . ? . description=dust scaffold_1239 . repeat_region 2577 3033 . + . description=GypsyPi-1c_I-int scaffold_1239 . repeat_region 3180 3214 . ? . description=trf scaffold_1239 . repeat_region 3180 3214 . ? . description=dust scaffold_1239 . biological_region 3651 3651 0.999 + . logic_name=eponine scaffold_1239 . biological_region 4239 4242 0.999 - . logic_name=eponine scaffold_1239 ensembl protein_coding_gene 28 3227 . + . ID=Physo145446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12390001;logic_name=jgi_physo1_1 scaffold_1239 ensembl transcript 28 3227 . + . ID=Physo145446;Parent=Physo145446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1239 . CDS 28 568 . + 0 ID=Physo145446;Parent=Physo145446;rank=1 scaffold_1239 . exon 28 568 . + . ID=Physo145446.1;Parent=Physo145446;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1239 . CDS 606 760 . + 0 ID=Physo145446;Parent=Physo145446;rank=2 scaffold_1239 . exon 606 760 . + . ID=Physo145446.2;Parent=Physo145446;constitutive=1;ensembl_phase=1;rank=2 scaffold_1239 . CDS 2643 3227 . + 0 ID=Physo145446;Parent=Physo145446;rank=3 scaffold_1239 . exon 2643 3227 . + . ID=Physo145446.3;Parent=Physo145446;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1230 1 4513 scaffold_1230 . repeat_region 2437 3726 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1234 1 4515 scaffold_1234 . biological_region 47 48 0.999 + . logic_name=eponine scaffold_1234 . biological_region 70 74 0.999 - . logic_name=eponine scaffold_1234 . repeat_region 1766 3544 . ? . description=dust scaffold_1234 ensembl protein_coding_gene 4 409 . - . ID=Physo145443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12340001;logic_name=jgi_physo1_1 scaffold_1234 ensembl transcript 4 409 . - . ID=Physo145443;Parent=Physo145443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1234 . exon 4 409 . - . ID=Physo145443.1;Parent=Physo145443;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1234 . CDS 5 409 . - 0 ID=Physo145443;Parent=Physo145443;rank=1 scaffold_1234 ensembl protein_coding_gene 688 3685 . - . ID=Physo145444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12340002;logic_name=jgi_physo1_1 scaffold_1234 ensembl transcript 688 3685 . - . ID=Physo145444;Parent=Physo145444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1234 . CDS 688 1692 . - 0 ID=Physo145444;Parent=Physo145444;rank=1 scaffold_1234 . exon 688 1736 . - . ID=Physo145444.2;Parent=Physo145444;constitutive=1;ensembl_phase=-1;rank=2 scaffold_1234 . exon 3545 3685 . - . ID=Physo145444.1;Parent=Physo145444;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1228 1 4521 scaffold_1228 . repeat_region 135 305 . - . description=Polinton-1_PI scaffold_1228 . repeat_region 336 402 . - . description=Polinton-1_PI scaffold_1228 . repeat_region 1522 1803 . + . description=Polinton-1_PI scaffold_1228 . biological_region 1722 1727 0.999 + . logic_name=eponine scaffold_1228 . repeat_region 1824 2008 . + . description=Polinton-1_PI scaffold_1228 . repeat_region 2321 3247 . ? . description=dust scaffold_1228 . repeat_region 3249 4517 . + . description=Polinton-1_PI scaffold_1228 ensembl protein_coding_gene 1231 2320 . + . ID=Physo145439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12280001;logic_name=jgi_physo1_1 scaffold_1228 ensembl transcript 1231 2320 . + . ID=Physo145439;Parent=Physo145439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1228 . exon 1231 1237 . + . ID=Physo145439.1;Parent=Physo145439;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1228 . exon 1626 2029 . + . ID=Physo145439.2;Parent=Physo145439;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_1228 . CDS 1642 2029 . + 0 ID=Physo145439;Parent=Physo145439;rank=1 scaffold_1228 . CDS 2118 2236 . + 0 ID=Physo145439;Parent=Physo145439;rank=2 scaffold_1228 . exon 2118 2320 . + . ID=Physo145439.3;Parent=Physo145439;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1227 1 4526 scaffold_1227 . repeat_region 1632 2513 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1226 1 4532 scaffold_1226 . biological_region 116 121 0.999 + . logic_name=eponine scaffold_1226 . biological_region 136 137 0.999 + . logic_name=eponine scaffold_1226 . biological_region 234 237 0.999 + . logic_name=eponine scaffold_1226 . biological_region 235 236 0.999 - . logic_name=eponine scaffold_1226 . biological_region 252 255 0.999 - . logic_name=eponine scaffold_1226 . biological_region 1351 1351 0.999 - . logic_name=eponine scaffold_1226 . biological_region 1426 1427 0.999 + . logic_name=eponine scaffold_1226 . biological_region 1453 1454 0.999 - . logic_name=eponine scaffold_1226 . biological_region 1618 1621 0.999 - . logic_name=eponine scaffold_1226 . repeat_region 2030 2744 . ? . description=dust scaffold_1226 . repeat_region 3534 3571 . ? . description=trf scaffold_1226 . repeat_region 3626 4332 . + . description=GypsyPi-1c_I-int scaffold_1226 . repeat_region 4075 4299 . ? . description=trf scaffold_1226 ensembl protein_coding_gene 66 518 . + . ID=Physo145438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12260001;logic_name=jgi_physo1_1 scaffold_1226 ensembl transcript 66 518 . + . ID=Physo145438;Parent=Physo145438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1226 . CDS 66 518 . + 0 ID=Physo145438;Parent=Physo145438;rank=1 scaffold_1226 . exon 66 518 . + . ID=Physo145438.1;Parent=Physo145438;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1224 1 4538 scaffold_1224 . repeat_region 1285 3755 . ? . description=dust scaffold_1224 . biological_region 4338 4342 0.999 - . logic_name=eponine scaffold_1224 ensembl protein_coding_gene 1 4442 . + . ID=Physo145437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12240001;logic_name=jgi_physo1_1 scaffold_1224 ensembl transcript 1 4442 . + . ID=Physo145437;Parent=Physo145437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1224 . exon 1 1274 . + . ID=Physo145437.1;Parent=Physo145437;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1224 . CDS 45 1274 . + 0 ID=Physo145437;Parent=Physo145437;rank=1 scaffold_1224 . CDS 3758 3961 . + 0 ID=Physo145437;Parent=Physo145437;rank=2 scaffold_1224 . exon 3758 3961 . + . ID=Physo145437.2;Parent=Physo145437;constitutive=1;rank=2 scaffold_1224 . CDS 4014 4442 . + 0 ID=Physo145437;Parent=Physo145437;rank=3 scaffold_1224 . exon 4014 4442 . + . ID=Physo145437.3;Parent=Physo145437;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1225 1 4538 scaffold_1225 . biological_region 450 452 0.999 - . logic_name=eponine scaffold_1225 . repeat_region 652 693 . ? . description=trf scaffold_1225 . biological_region 708 708 0.999 + . logic_name=eponine scaffold_1225 . biological_region 736 737 0.999 - . logic_name=eponine scaffold_1225 . biological_region 974 974 0.999 - . logic_name=eponine scaffold_1225 . repeat_region 1075 1110 . ? . description=trf scaffold_1225 . biological_region 1291 1298 0.999 + . logic_name=eponine scaffold_1225 . biological_region 1367 1370 0.999 + . logic_name=eponine scaffold_1225 . biological_region 1370 1374 0.999 - . logic_name=eponine scaffold_1225 . repeat_region 1515 1614 . ? . description=trf scaffold_1225 . repeat_region 2472 3224 . ? . description=dust scaffold_1225 . biological_region 3330 3330 0.999 + . logic_name=eponine scaffold_1225 . biological_region 3447 3447 0.999 - . logic_name=eponine scaffold_1225 . biological_region 3571 3579 0.999 - . logic_name=eponine scaffold_1225 . biological_region 3598 3599 0.999 - . logic_name=eponine scaffold_1225 . biological_region 3652 3656 0.999 + . logic_name=eponine scaffold_1225 . biological_region 3766 3767 0.999 - . logic_name=eponine scaffold_1225 . biological_region 3863 3866 0.999 - . logic_name=eponine scaffold_1225 . biological_region 3864 3866 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1236 1 4538 scaffold_1236 . biological_region 1663 1666 0.999 + . logic_name=eponine scaffold_1236 . repeat_region 1689 1744 . ? . description=trf scaffold_1236 . repeat_region 2053 3106 . ? . description=dust scaffold_1236 . biological_region 3992 3994 0.999 + . logic_name=eponine scaffold_1236 . biological_region 4057 4058 0.999 - . logic_name=eponine scaffold_1236 . biological_region 4317 4318 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1223 1 4542 scaffold_1223 . biological_region 137 144 0.999 + . logic_name=eponine scaffold_1223 . biological_region 178 180 0.999 - . logic_name=eponine scaffold_1223 . repeat_region 1062 1215 . ? . description=trf scaffold_1223 . repeat_region 1488 3158 . ? . description=dust scaffold_1223 . repeat_region 3900 3977 . ? . description=trf scaffold_1223 . repeat_region 4070 4154 . ? . description=trf scaffold_1223 . repeat_region 4143 4258 . ? . description=trf scaffold_1223 . repeat_region 4164 4234 . ? . description=trf scaffold_1223 . repeat_region 4172 4225 . ? . description=trf scaffold_1223 . repeat_region 4182 4244 . ? . description=trf scaffold_1223 . repeat_region 4532 4542 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1229 1 4542 scaffold_1229 . repeat_region 1222 1544 . ? . description=trf scaffold_1229 . biological_region 1372 1376 0.999 - . logic_name=eponine scaffold_1229 . biological_region 1456 1458 0.999 + . logic_name=eponine scaffold_1229 . repeat_region 1940 2237 . ? . description=dust scaffold_1229 ensembl protein_coding_gene 2287 2649 . + . ID=Physo145440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12290001;logic_name=jgi_physo1_1 scaffold_1229 ensembl transcript 2287 2649 . + . ID=Physo145440;Parent=Physo145440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1229 . CDS 2287 2649 . + 0 ID=Physo145440;Parent=Physo145440;rank=1 scaffold_1229 . exon 2287 2649 . + . ID=Physo145440.1;Parent=Physo145440;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1222 1 4547 scaffold_1222 . repeat_region 684 701 . ? . description=dust scaffold_1222 . repeat_region 1688 1729 . ? . description=trf scaffold_1222 . biological_region 2788 2790 0.999 + . logic_name=eponine scaffold_1222 . biological_region 3053 3060 0.999 - . logic_name=eponine scaffold_1222 . biological_region 3180 3184 0.999 + . logic_name=eponine scaffold_1222 . repeat_region 3960 3982 . ? . description=dust scaffold_1222 . repeat_region 3963 3982 . ? . description=trf scaffold_1222 ensembl protein_coding_gene 1837 3346 . + . ID=Physo145436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12220001;logic_name=jgi_physo1_1 scaffold_1222 ensembl transcript 1837 3346 . + . ID=Physo145436;Parent=Physo145436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1222 . CDS 1837 1864 . + 0 ID=Physo145436;Parent=Physo145436;rank=1 scaffold_1222 . exon 1837 1864 . + . ID=Physo145436.1;Parent=Physo145436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1222 . CDS 2376 2873 . + 0 ID=Physo145436;Parent=Physo145436;rank=2 scaffold_1222 . exon 2376 2873 . + . ID=Physo145436.2;Parent=Physo145436;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1222 . CDS 2958 3346 . + 0 ID=Physo145436;Parent=Physo145436;rank=3 scaffold_1222 . exon 2958 3346 . + . ID=Physo145436.3;Parent=Physo145436;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1221 1 4557 scaffold_1221 . biological_region 2075 2079 0.999 + . logic_name=eponine scaffold_1221 . biological_region 4019 4022 0.999 - . logic_name=eponine scaffold_1221 . repeat_region 4023 4088 . ? . description=trf scaffold_1221 . repeat_region 4023 4088 . ? . description=trf scaffold_1221 . biological_region 4030 4032 0.999 + . logic_name=eponine scaffold_1221 . biological_region 4082 4083 0.999 - . logic_name=eponine scaffold_1221 . biological_region 4126 4134 0.999 - . logic_name=eponine scaffold_1221 . biological_region 4147 4155 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1219 1 4568 scaffold_1219 . repeat_region 1857 2560 . ? . description=dust scaffold_1219 ensembl protein_coding_gene 3270 3623 . - . ID=Physo145435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12190001;logic_name=jgi_physo1_1 scaffold_1219 ensembl transcript 3270 3623 . - . ID=Physo145435;Parent=Physo145435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1219 . CDS 3270 3623 . - 0 ID=Physo145435;Parent=Physo145435;rank=1 scaffold_1219 . exon 3270 3623 . - . ID=Physo145435.1;Parent=Physo145435;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1240 1 4580 scaffold_1240 . repeat_region 1198 1331 . ? . description=dust scaffold_1240 . repeat_region 1475 1484 . ? . description=dust scaffold_1240 . repeat_region 1569 1640 . ? . description=trf scaffold_1240 . repeat_region 1625 1756 . ? . description=trf scaffold_1240 . biological_region 2666 2670 0.999 - . logic_name=eponine scaffold_1240 . biological_region 2722 2728 0.999 + . logic_name=eponine scaffold_1240 . biological_region 2890 2893 0.999 + . logic_name=eponine scaffold_1240 ensembl protein_coding_gene 2698 4542 . + . ID=Physo145447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12400001;logic_name=jgi_physo1_1 scaffold_1240 ensembl transcript 2698 4542 . + . ID=Physo145447;Parent=Physo145447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1240 . CDS 2698 2926 . + 0 ID=Physo145447;Parent=Physo145447;rank=1 scaffold_1240 . exon 2698 2926 . + . ID=Physo145447.1;Parent=Physo145447;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1240 . CDS 3051 3806 . + 0 ID=Physo145447;Parent=Physo145447;rank=2 scaffold_1240 . exon 3051 3806 . + . ID=Physo145447.2;Parent=Physo145447;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1240 . CDS 3906 4540 . + 0 ID=Physo145447;Parent=Physo145447;rank=3 scaffold_1240 . exon 3906 4542 . + . ID=Physo145447.3;Parent=Physo145447;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_1218 1 4588 scaffold_1218 . repeat_region 1043 1527 . ? . description=dust scaffold_1218 . repeat_region 1638 1648 . ? . description=dust scaffold_1218 . repeat_region 1916 1984 . ? . description=trf scaffold_1218 . biological_region 2059 2063 0.999 + . logic_name=eponine scaffold_1218 . biological_region 2117 2117 0.999 - . logic_name=eponine scaffold_1218 . biological_region 2152 2158 0.999 + . logic_name=eponine scaffold_1218 . biological_region 2168 2175 0.999 - . logic_name=eponine scaffold_1218 . biological_region 2171 2174 0.999 + . logic_name=eponine scaffold_1218 . biological_region 2195 2198 0.999 - . logic_name=eponine scaffold_1218 . biological_region 3203 3203 0.999 + . logic_name=eponine scaffold_1218 . biological_region 3344 3344 0.999 - . logic_name=eponine scaffold_1218 . repeat_region 3468 3489 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1217 1 4603 scaffold_1217 . repeat_region 2041 3190 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1215 1 4625 scaffold_1215 . biological_region 212 217 0.999 + . logic_name=eponine scaffold_1215 . repeat_region 2003 2045 . ? . description=trf scaffold_1215 ensembl protein_coding_gene 597 1860 . - . ID=Physo109746;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_12150001;logic_name=jgi_physo1_1 scaffold_1215 ensembl transcript 597 1860 . - . ID=Physo109746;Parent=Physo109746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1215 . exon 597 901 . - . ID=Physo109746.4;Parent=Physo109746;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_1215 . CDS 836 901 . - 0 ID=Physo109746;Parent=Physo109746;rank=4 scaffold_1215 . CDS 979 1130 . - 0 ID=Physo109746;Parent=Physo109746;rank=3 scaffold_1215 . exon 979 1130 . - . ID=Physo109746.3;Parent=Physo109746;constitutive=1;ensembl_phase=1;rank=3 scaffold_1215 . CDS 1205 1334 . - 0 ID=Physo109746;Parent=Physo109746;rank=2 scaffold_1215 . exon 1205 1334 . - . ID=Physo109746.2;Parent=Physo109746;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1215 . CDS 1440 1853 . - 0 ID=Physo109746;Parent=Physo109746;rank=1 scaffold_1215 . exon 1440 1860 . - . ID=Physo109746.1;Parent=Physo109746;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1215 ensembl protein_coding_gene 2094 3266 . + . ID=Physo126550;biotype=protein_coding;external_name=estExt_Genewise1.C_12150006;logic_name=jgi_physo1_1 scaffold_1215 ensembl transcript 2094 3266 . + . ID=Physo126550;Parent=Physo126550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1215 . CDS 2094 2293 . + 0 ID=Physo126550;Parent=Physo126550;rank=1 scaffold_1215 . exon 2094 2293 . + . ID=Physo126550.1;Parent=Physo126550;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1215 . CDS 2363 2396 . + 0 ID=Physo126550;Parent=Physo126550;rank=2 scaffold_1215 . exon 2363 2396 . + . ID=Physo126550.2;Parent=Physo126550;constitutive=1;ensembl_phase=2;rank=2 scaffold_1215 . CDS 2476 2535 . + 0 ID=Physo126550;Parent=Physo126550;rank=3 scaffold_1215 . exon 2476 2535 . + . ID=Physo126550.3;Parent=Physo126550;constitutive=1;rank=3 scaffold_1215 . CDS 2604 2662 . + 0 ID=Physo126550;Parent=Physo126550;rank=4 scaffold_1215 . exon 2604 2662 . + . ID=Physo126550.4;Parent=Physo126550;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1215 . CDS 2749 2912 . + 0 ID=Physo126550;Parent=Physo126550;rank=5 scaffold_1215 . exon 2749 2912 . + . ID=Physo126550.5;Parent=Physo126550;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1215 . CDS 2981 3104 . + 0 ID=Physo126550;Parent=Physo126550;rank=6 scaffold_1215 . exon 2981 3104 . + . ID=Physo126550.6;Parent=Physo126550;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_1215 . CDS 3206 3266 . + 0 ID=Physo126550;Parent=Physo126550;rank=7 scaffold_1215 . exon 3206 3266 . + . ID=Physo126550.7;Parent=Physo126550;constitutive=1;ensembl_phase=2;rank=7 scaffold_1215 ensembl protein_coding_gene 4021 4622 . + . ID=Physo145434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12150003;logic_name=jgi_physo1_1 scaffold_1215 ensembl transcript 4021 4622 . + . ID=Physo145434;Parent=Physo145434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1215 . CDS 4021 4620 . + 0 ID=Physo145434;Parent=Physo145434;rank=1 scaffold_1215 . exon 4021 4622 . + . ID=Physo145434.1;Parent=Physo145434;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1214 1 4639 scaffold_1214 . repeat_region 621 628 . ? . description=dust scaffold_1214 . repeat_region 1649 1656 . ? . description=dust scaffold_1214 . repeat_region 3758 3767 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1212 1 4646 scaffold_1212 . repeat_region 1224 2429 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1211 1 4655 scaffold_1211 . repeat_region 1096 2310 . ? . description=dust scaffold_1211 . biological_region 3511 3515 0.999 - . logic_name=eponine scaffold_1211 . repeat_region 4096 4146 . ? . description=trf scaffold_1211 . repeat_region 4188 4218 . ? . description=trf scaffold_1211 . repeat_region 4223 4260 . ? . description=trf scaffold_1211 . biological_region 4478 4480 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1216 1 4659 scaffold_1216 . repeat_region 128 178 . ? . description=trf scaffold_1216 . repeat_region 220 264 . ? . description=trf scaffold_1216 . repeat_region 269 306 . ? . description=trf scaffold_1216 . biological_region 792 792 0.999 + . logic_name=eponine scaffold_1216 . repeat_region 1137 2050 . ? . description=dust scaffold_1216 . repeat_region 3041 3076 . ? . description=trf scaffold_1216 . repeat_region 3081 3125 . ? . description=trf scaffold_1216 . repeat_region 3298 3347 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1209 1 4693 scaffold_1209 . repeat_region 191 875 . + . description=Polinton-1_PI scaffold_1209 . repeat_region 876 3543 . ? . description=dust scaffold_1209 . repeat_region 3544 4689 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1207 1 4713 scaffold_1207 . repeat_region 890 901 . ? . description=dust scaffold_1207 . biological_region 2816 2819 0.999 + . logic_name=eponine scaffold_1207 . biological_region 2867 2869 0.999 - . logic_name=eponine scaffold_1207 . repeat_region 3715 3771 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1208 1 4735 scaffold_1208 . repeat_region 775 2425 . ? . description=dust scaffold_1208 . repeat_region 2475 3101 . + . description=GypsyPi-1c_I-int scaffold_1208 . repeat_region 3685 4720 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_1203 1 4743 scaffold_1203 . repeat_region 2395 2619 . ? . description=dust scaffold_1203 . biological_region 2829 2832 0.999 - . logic_name=eponine scaffold_1203 . repeat_region 4669 4743 . ? . description=trf scaffold_1203 . repeat_region 4671 4743 . ? . description=trf scaffold_1203 . repeat_region 4679 4738 . ? . description=dust scaffold_1203 . repeat_region 4679 4743 . ? . description=trf scaffold_1203 ensembl protein_coding_gene 281 2383 . + . ID=Physo145429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12030001;logic_name=jgi_physo1_1 scaffold_1203 ensembl transcript 281 2383 . + . ID=Physo145429;Parent=Physo145429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1203 . CDS 281 2170 . + 0 ID=Physo145429;Parent=Physo145429;rank=1 scaffold_1203 . exon 281 2383 . + . ID=Physo145429.1;Parent=Physo145429;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1203 ensembl protein_coding_gene 2740 4243 . + . ID=Physo145430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12030002;logic_name=jgi_physo1_1 scaffold_1203 ensembl transcript 2740 4243 . + . ID=Physo145430;Parent=Physo145430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1203 . CDS 2740 3065 . + 0 ID=Physo145430;Parent=Physo145430;rank=1 scaffold_1203 . exon 2740 3065 . + . ID=Physo145430.1;Parent=Physo145430;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1203 . CDS 3246 3311 . + 0 ID=Physo145430;Parent=Physo145430;rank=2 scaffold_1203 . exon 3246 3311 . + . ID=Physo145430.2;Parent=Physo145430;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1203 . CDS 3503 4192 . + 0 ID=Physo145430;Parent=Physo145430;rank=3 scaffold_1203 . exon 3503 4192 . + . ID=Physo145430.3;Parent=Physo145430;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1203 . CDS 4237 4243 . + 0 ID=Physo145430;Parent=Physo145430;rank=4 scaffold_1203 . exon 4237 4243 . + . ID=Physo145430.4;Parent=Physo145430;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_1213 1 4769 scaffold_1213 . biological_region 27 33 0.999 + . logic_name=eponine scaffold_1213 . biological_region 1079 1081 0.999 - . logic_name=eponine scaffold_1213 . repeat_region 1408 1535 . ? . description=dust scaffold_1213 . biological_region 1938 1940 0.999 - . logic_name=eponine scaffold_1213 . biological_region 1979 1982 0.999 + . logic_name=eponine scaffold_1213 . biological_region 2048 2048 0.999 - . logic_name=eponine scaffold_1213 . biological_region 2409 2410 0.999 + . logic_name=eponine scaffold_1213 . biological_region 2427 2428 0.999 - . logic_name=eponine scaffold_1213 . repeat_region 2703 3161 . ? . description=dust scaffold_1213 . repeat_region 3162 4264 . + . description=GypsyPi-1c_I-int scaffold_1213 . biological_region 4235 4239 0.999 + . logic_name=eponine scaffold_1213 . repeat_region 4572 4766 . + . description=GypsyPi-1c_I-int scaffold_1213 . biological_region 4664 4667 0.999 + . logic_name=eponine scaffold_1213 ensembl protein_coding_gene 930 4670 . + . ID=Physo145431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12130001;logic_name=jgi_physo1_1 scaffold_1213 ensembl transcript 930 4670 . + . ID=Physo145431;Parent=Physo145431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1213 . CDS 930 1395 . + 0 ID=Physo145431;Parent=Physo145431;rank=1 scaffold_1213 . exon 930 1395 . + . ID=Physo145431.1;Parent=Physo145431;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1213 . CDS 1678 2678 . + 0 ID=Physo145431;Parent=Physo145431;rank=2 scaffold_1213 . exon 1678 2678 . + . ID=Physo145431.2;Parent=Physo145431;constitutive=1;ensembl_phase=1;rank=2 scaffold_1213 . CDS 3277 3579 . + 0 ID=Physo145431;Parent=Physo145431;rank=3 scaffold_1213 . exon 3277 3579 . + . ID=Physo145431.3;Parent=Physo145431;constitutive=1;rank=3 scaffold_1213 . CDS 3664 4584 . + 0 ID=Physo145431;Parent=Physo145431;rank=4 scaffold_1213 . exon 3664 4584 . + . ID=Physo145431.4;Parent=Physo145431;constitutive=1;rank=4 scaffold_1213 . CDS 4635 4670 . + 0 ID=Physo145431;Parent=Physo145431;rank=5 scaffold_1213 . exon 4635 4670 . + . ID=Physo145431.5;Parent=Physo145431;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1202 1 4771 scaffold_1202 . repeat_region 1 1599 . + . description=GypsyPi-1c_I-int scaffold_1202 . biological_region 1037 1042 0.999 + . logic_name=eponine scaffold_1202 . repeat_region 1943 2678 . ? . description=dust scaffold_1202 . biological_region 2721 2729 0.999 + . logic_name=eponine scaffold_1202 . biological_region 2834 2835 0.999 + . logic_name=eponine scaffold_1202 . biological_region 2853 2861 0.999 + . logic_name=eponine scaffold_1202 ensembl protein_coding_gene 703 1101 . + . ID=Physo109745;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_12020001;logic_name=jgi_physo1_1 scaffold_1202 ensembl transcript 703 1101 . + . ID=Physo109745;Parent=Physo109745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1202 . CDS 703 1101 . + 0 ID=Physo109745;Parent=Physo109745;rank=1 scaffold_1202 . exon 703 1101 . + . ID=Physo109745.1;Parent=Physo109745;constitutive=1;rank=1 scaffold_1202 ensembl protein_coding_gene 3 269 . + . ID=Physo126537;biotype=protein_coding;external_name=estExt_Genewise1.C_12020002;logic_name=jgi_physo1_1 scaffold_1202 ensembl transcript 3 269 . + . ID=Physo126537;Parent=Physo126537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1202 . exon 3 269 . + . ID=Physo126537.1;Parent=Physo126537;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1202 . CDS 21 269 . + 0 ID=Physo126537;Parent=Physo126537;rank=1 ##gff-version 3 ##sequence-region scaffold_1204 1 4779 scaffold_1204 . repeat_region 1687 2495 . ? . description=dust scaffold_1204 . biological_region 3269 3274 0.999 - . logic_name=eponine scaffold_1204 . biological_region 4127 4129 0.999 + . logic_name=eponine scaffold_1204 . biological_region 4235 4238 0.999 - . logic_name=eponine scaffold_1204 . biological_region 4257 4260 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1179 1 4784 scaffold_1179 . repeat_region 14 250 . + . description=GypsyPi-1c_I-int scaffold_1179 . biological_region 197 197 0.999 - . logic_name=eponine scaffold_1179 . biological_region 405 408 0.999 - . logic_name=eponine scaffold_1179 . biological_region 1411 1418 0.999 + . logic_name=eponine scaffold_1179 ensembl protein_coding_gene 3769 4203 . - . ID=Physo126524;biotype=protein_coding;external_name=estExt_Genewise1.C_11790001;logic_name=jgi_physo1_1 scaffold_1179 ensembl transcript 3769 4203 . - . ID=Physo126524;Parent=Physo126524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1179 . exon 3769 4203 . - . ID=Physo126524.1;Parent=Physo126524;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1179 . CDS 4094 4201 . - 0 ID=Physo126524;Parent=Physo126524;rank=1 scaffold_1179 ensembl protein_coding_gene 4192 4620 . - . ID=Physo126525;biotype=protein_coding;external_name=estExt_Genewise1.C_11790002;logic_name=jgi_physo1_1 scaffold_1179 ensembl transcript 4192 4620 . - . ID=Physo126525;Parent=Physo126525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1179 . exon 4192 4620 . - . ID=Physo126525.1;Parent=Physo126525;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1179 . CDS 4381 4620 . - 0 ID=Physo126525;Parent=Physo126525;rank=1 scaffold_1179 ensembl protein_coding_gene 48 266 . + . ID=Physo126527;biotype=protein_coding;external_name=estExt_Genewise1.C_11790004;logic_name=jgi_physo1_1 scaffold_1179 ensembl transcript 48 266 . + . ID=Physo126527;Parent=Physo126527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1179 . exon 48 266 . + . ID=Physo126527.1;Parent=Physo126527;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1179 . CDS 97 189 . + 0 ID=Physo126527;Parent=Physo126527;rank=1 ##gff-version 3 ##sequence-region scaffold_1201 1 4794 scaffold_1201 . repeat_region 2466 3205 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1198 1 4813 scaffold_1198 . repeat_region 1109 3745 . ? . description=dust scaffold_1198 . biological_region 4030 4034 0.999 + . logic_name=eponine scaffold_1198 . biological_region 4098 4102 0.999 + . logic_name=eponine scaffold_1198 . biological_region 4122 4126 0.999 - . logic_name=eponine scaffold_1198 . biological_region 4179 4188 0.999 - . logic_name=eponine scaffold_1198 . biological_region 4202 4209 0.999 + . logic_name=eponine scaffold_1198 . biological_region 4210 4215 0.999 - . logic_name=eponine scaffold_1198 . biological_region 4250 4250 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1199 1 4824 scaffold_1199 . repeat_region 284 1667 . + . description=Polinton-1_PI scaffold_1199 . repeat_region 1483 1490 . ? . description=dust scaffold_1199 . repeat_region 2123 2901 . ? . description=dust scaffold_1199 . repeat_region 4121 4321 . ? . description=trf scaffold_1199 . repeat_region 4592 4824 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_1197 1 4825 scaffold_1197 . repeat_region 504 1086 . - . description=GypsyPi-1c_I-int scaffold_1197 . biological_region 832 835 0.999 - . logic_name=eponine scaffold_1197 . biological_region 1622 1622 0.999 - . logic_name=eponine scaffold_1197 . repeat_region 2652 3426 . ? . description=dust scaffold_1197 . biological_region 3846 3846 0.999 + . logic_name=eponine scaffold_1197 . biological_region 3878 3882 0.999 - . logic_name=eponine scaffold_1197 . repeat_region 3920 3943 . ? . description=dust scaffold_1197 . repeat_region 3946 3953 . ? . description=dust scaffold_1197 ensembl protein_coding_gene 41 2043 . - . ID=Physo145426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11970001;logic_name=jgi_physo1_1 scaffold_1197 ensembl transcript 41 2043 . - . ID=Physo145426;Parent=Physo145426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1197 . CDS 41 910 . - 0 ID=Physo145426;Parent=Physo145426;rank=3 scaffold_1197 . exon 41 910 . - . ID=Physo145426.3;Parent=Physo145426;constitutive=1;rank=3 scaffold_1197 . CDS 1092 1663 . - 0 ID=Physo145426;Parent=Physo145426;rank=2 scaffold_1197 . exon 1092 1663 . - . ID=Physo145426.2;Parent=Physo145426;constitutive=1;ensembl_phase=1;rank=2 scaffold_1197 . CDS 1695 2043 . - 0 ID=Physo145426;Parent=Physo145426;rank=1 scaffold_1197 . exon 1695 2043 . - . ID=Physo145426.1;Parent=Physo145426;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1195 1 4826 scaffold_1195 . repeat_region 1 1254 . - . description=Sola3-1_PS scaffold_1195 . repeat_region 1196 1205 . ? . description=dust scaffold_1195 . repeat_region 1256 3837 . ? . description=dust scaffold_1195 ensembl protein_coding_gene 4035 4769 . + . ID=Physo145425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11950001;logic_name=jgi_physo1_1 scaffold_1195 ensembl transcript 4035 4769 . + . ID=Physo145425;Parent=Physo145425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1195 . CDS 4035 4769 . + 0 ID=Physo145425;Parent=Physo145425;rank=1 scaffold_1195 . exon 4035 4769 . + . ID=Physo145425.1;Parent=Physo145425;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1206 1 4826 scaffold_1206 . biological_region 81 85 0.999 - . logic_name=eponine scaffold_1206 . biological_region 105 109 0.999 - . logic_name=eponine scaffold_1206 . biological_region 449 449 0.999 + . logic_name=eponine scaffold_1206 . repeat_region 1097 2174 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1210 1 4827 scaffold_1210 . repeat_region 1516 3303 . ? . description=dust scaffold_1210 . biological_region 4432 4435 0.999 + . logic_name=eponine scaffold_1210 . biological_region 4528 4531 0.999 + . logic_name=eponine scaffold_1210 . biological_region 4568 4568 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1194 1 4833 scaffold_1194 . biological_region 176 178 0.999 - . logic_name=eponine scaffold_1194 . repeat_region 1169 2014 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1196 1 4833 scaffold_1196 . repeat_region 1753 1779 . ? . description=dust scaffold_1196 . repeat_region 2746 2755 . ? . description=dust scaffold_1196 . biological_region 3383 3385 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1188 1 4841 scaffold_1188 . repeat_region 814 826 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1193 1 4842 scaffold_1193 . repeat_region 1666 3611 . ? . description=dust scaffold_1193 ensembl protein_coding_gene 3983 4375 . - . ID=Physo126533;biotype=protein_coding;external_name=estExt_Genewise1.C_11930001;logic_name=jgi_physo1_1 scaffold_1193 ensembl transcript 3983 4375 . - . ID=Physo126533;Parent=Physo126533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1193 . CDS 3983 4255 . - 0 ID=Physo126533;Parent=Physo126533;rank=1 scaffold_1193 . exon 3983 4375 . - . ID=Physo126533.1;Parent=Physo126533;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1192 1 4844 scaffold_1192 . biological_region 1881 1882 0.999 - . logic_name=eponine scaffold_1192 . repeat_region 2111 2773 . ? . description=dust scaffold_1192 ensembl protein_coding_gene 4606 4837 . + . ID=Physo126532;biotype=protein_coding;external_name=estExt_Genewise1.C_11920001;logic_name=jgi_physo1_1 scaffold_1192 ensembl transcript 4606 4837 . + . ID=Physo126532;Parent=Physo126532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1192 . exon 4606 4837 . + . ID=Physo126532.1;Parent=Physo126532;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1192 . CDS 4616 4837 . + 0 ID=Physo126532;Parent=Physo126532;rank=1 ##gff-version 3 ##sequence-region scaffold_1191 1 4846 scaffold_1191 . repeat_region 956 3766 . ? . description=dust scaffold_1191 . biological_region 3889 3893 0.999 + . logic_name=eponine scaffold_1191 . biological_region 4144 4149 0.999 + . logic_name=eponine scaffold_1191 . biological_region 4349 4350 0.999 + . logic_name=eponine scaffold_1191 . biological_region 4517 4521 0.999 + . logic_name=eponine scaffold_1191 . biological_region 4653 4660 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1190 1 4852 scaffold_1190 . biological_region 412 420 0.999 + . logic_name=eponine scaffold_1190 . repeat_region 1437 2667 . ? . description=dust scaffold_1190 . repeat_region 2889 2941 . ? . description=dust scaffold_1190 ensembl protein_coding_gene 577 1436 . + . ID=Physo126531;biotype=protein_coding;external_name=estExt_Genewise1.C_11900001;logic_name=jgi_physo1_1 scaffold_1190 ensembl transcript 577 1436 . + . ID=Physo126531;Parent=Physo126531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1190 . exon 577 1436 . + . ID=Physo126531.1;Parent=Physo126531;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1190 . CDS 839 1435 . + 0 ID=Physo126531;Parent=Physo126531;rank=1 ##gff-version 3 ##sequence-region scaffold_1189 1 4853 scaffold_1189 . repeat_region 216 224 . ? . description=dust scaffold_1189 . biological_region 540 544 0.999 + . logic_name=eponine scaffold_1189 . biological_region 660 660 0.999 - . logic_name=eponine scaffold_1189 . repeat_region 911 944 . ? . description=trf scaffold_1189 . repeat_region 2978 3155 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1187 1 4855 scaffold_1187 . repeat_region 1332 2493 . ? . description=dust scaffold_1187 . repeat_region 4435 4596 . ? . description=trf scaffold_1187 . biological_region 4662 4664 0.999 - . logic_name=eponine scaffold_1187 . biological_region 4755 4758 0.999 - . logic_name=eponine scaffold_1187 ensembl protein_coding_gene 3266 4792 . - . ID=Physo145423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11870001;logic_name=jgi_physo1_1 scaffold_1187 ensembl transcript 3266 4792 . - . ID=Physo145423;Parent=Physo145423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1187 . CDS 3266 3392 . - 0 ID=Physo145423;Parent=Physo145423;rank=4 scaffold_1187 . exon 3266 3392 . - . ID=Physo145423.4;Parent=Physo145423;constitutive=1;ensembl_phase=2;rank=4 scaffold_1187 . CDS 3849 4176 . - 0 ID=Physo145423;Parent=Physo145423;rank=3 scaffold_1187 . exon 3849 4176 . - . ID=Physo145423.3;Parent=Physo145423;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1187 . CDS 4270 4338 . - 0 ID=Physo145423;Parent=Physo145423;rank=2 scaffold_1187 . exon 4270 4338 . - . ID=Physo145423.2;Parent=Physo145423;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1187 . CDS 4390 4792 . - 0 ID=Physo145423;Parent=Physo145423;rank=1 scaffold_1187 . exon 4390 4792 . - . ID=Physo145423.1;Parent=Physo145423;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1186 1 4857 scaffold_1186 . biological_region 741 748 0.999 + . logic_name=eponine scaffold_1186 . biological_region 756 759 0.999 - . logic_name=eponine scaffold_1186 . biological_region 810 814 0.999 + . logic_name=eponine scaffold_1186 . repeat_region 931 939 . ? . description=dust scaffold_1186 . repeat_region 2101 3448 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1185 1 4868 scaffold_1185 . repeat_region 318 368 . ? . description=trf scaffold_1185 . repeat_region 318 370 . ? . description=trf scaffold_1185 . repeat_region 431 468 . ? . description=trf scaffold_1185 . repeat_region 642 795 . ? . description=dust scaffold_1185 . repeat_region 650 813 . ? . description=trf scaffold_1185 . repeat_region 654 795 . ? . description=trf scaffold_1185 . repeat_region 740 792 . ? . description=trf scaffold_1185 . repeat_region 1046 3618 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1183 1 4871 scaffold_1183 . repeat_region 1 183 . - . description=GypsyPi-1c_I-int scaffold_1183 . repeat_region 185 497 . - . description=GypsyPi-1c_LTR scaffold_1183 . biological_region 2378 2381 0.999 - . logic_name=eponine scaffold_1183 . repeat_region 2379 2395 . ? . description=dust scaffold_1183 . repeat_region 2473 2482 . ? . description=dust scaffold_1183 . repeat_region 2522 3894 . ? . description=dust scaffold_1183 . repeat_region 4155 4217 . ? . description=trf scaffold_1183 . repeat_region 4203 4240 . ? . description=trf scaffold_1183 ensembl protein_coding_gene 539 766 . + . ID=Physo126530;biotype=protein_coding;external_name=estExt_Genewise1.C_11830001;logic_name=jgi_physo1_1 scaffold_1183 ensembl transcript 539 766 . + . ID=Physo126530;Parent=Physo126530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1183 . exon 539 766 . + . ID=Physo126530.1;Parent=Physo126530;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1183 . CDS 563 766 . + 0 ID=Physo126530;Parent=Physo126530;rank=1 ##gff-version 3 ##sequence-region scaffold_1184 1 4871 scaffold_1184 . biological_region 157 158 0.999 - . logic_name=eponine scaffold_1184 . biological_region 399 406 0.999 + . logic_name=eponine scaffold_1184 . biological_region 435 448 0.999 - . logic_name=eponine scaffold_1184 . biological_region 489 495 0.999 - . logic_name=eponine scaffold_1184 . biological_region 676 680 0.999 - . logic_name=eponine scaffold_1184 . biological_region 864 867 0.999 - . logic_name=eponine scaffold_1184 . biological_region 1013 1015 0.999 - . logic_name=eponine scaffold_1184 . biological_region 1045 1046 0.999 - . logic_name=eponine scaffold_1184 . biological_region 1102 1104 0.999 + . logic_name=eponine scaffold_1184 . biological_region 1118 1120 0.999 + . logic_name=eponine scaffold_1184 . biological_region 1171 1174 0.999 - . logic_name=eponine scaffold_1184 . biological_region 1212 1212 0.999 - . logic_name=eponine scaffold_1184 . biological_region 1337 1339 0.999 + . logic_name=eponine scaffold_1184 . repeat_region 1379 1424 . ? . description=trf scaffold_1184 . repeat_region 1594 4197 . ? . description=dust scaffold_1184 . biological_region 4381 4386 0.999 - . logic_name=eponine scaffold_1184 . biological_region 4474 4475 0.999 - . logic_name=eponine scaffold_1184 . biological_region 4594 4595 0.999 - . logic_name=eponine scaffold_1184 . biological_region 4839 4839 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1200 1 4876 scaffold_1200 . repeat_region 854 861 . ? . description=dust scaffold_1200 . repeat_region 1431 1923 . ? . description=dust scaffold_1200 . repeat_region 3343 3392 . ? . description=dust scaffold_1200 ensembl protein_coding_gene 3859 4785 . - . ID=Physo145427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_12000001;logic_name=jgi_physo1_1 scaffold_1200 ensembl transcript 3859 4785 . - . ID=Physo145427;Parent=Physo145427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1200 . CDS 3859 4785 . - 0 ID=Physo145427;Parent=Physo145427;rank=1 scaffold_1200 . exon 3859 4785 . - . ID=Physo145427.1;Parent=Physo145427;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1182 1 4882 scaffold_1182 . repeat_region 1078 3760 . ? . description=dust scaffold_1182 . biological_region 3940 3941 0.999 + . logic_name=eponine scaffold_1182 . biological_region 4409 4409 0.999 + . logic_name=eponine scaffold_1182 ensembl protein_coding_gene 220 1011 . - . ID=Physo126528;biotype=protein_coding;external_name=estExt_Genewise1.C_11820001;logic_name=jgi_physo1_1 scaffold_1182 ensembl transcript 220 1011 . - . ID=Physo126528;Parent=Physo126528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1182 . CDS 220 339 . - 0 ID=Physo126528;Parent=Physo126528;rank=2 scaffold_1182 . exon 220 339 . - . ID=Physo126528.2;Parent=Physo126528;constitutive=1;rank=2 scaffold_1182 . CDS 354 848 . - 0 ID=Physo126528;Parent=Physo126528;rank=1 scaffold_1182 . exon 354 1011 . - . ID=Physo126528.1;Parent=Physo126528;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1181 1 4898 scaffold_1181 . repeat_region 1148 3464 . ? . description=dust scaffold_1181 . repeat_region 4644 4657 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1180 1 4901 scaffold_1180 . repeat_region 1510 1517 . ? . description=dust scaffold_1180 . repeat_region 1939 2924 . ? . description=dust scaffold_1180 . repeat_region 2931 4878 . + . description=GypsyPi-1c_I-int scaffold_1180 . biological_region 4236 4238 0.999 - . logic_name=eponine scaffold_1180 . biological_region 4886 4891 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1178 1 4920 scaffold_1178 . repeat_region 1689 4199 . ? . description=dust scaffold_1178 . repeat_region 4200 4741 . - . description=GypsyPi-1c_I-int scaffold_1178 . biological_region 4742 4743 0.999 - . logic_name=eponine scaffold_1178 . biological_region 4767 4768 0.999 + . logic_name=eponine scaffold_1178 . biological_region 4802 4802 0.999 + . logic_name=eponine scaffold_1178 . biological_region 4850 4853 0.999 - . logic_name=eponine scaffold_1178 ensembl protein_coding_gene 4203 4663 . - . ID=Physo126522;biotype=protein_coding;external_name=estExt_Genewise1.C_11780001;logic_name=jgi_physo1_1 scaffold_1178 ensembl transcript 4203 4663 . - . ID=Physo126522;Parent=Physo126522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1178 . CDS 4203 4463 . - 0 ID=Physo126522;Parent=Physo126522;rank=1 scaffold_1178 . exon 4203 4663 . - . ID=Physo126522.1;Parent=Physo126522;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1178 ensembl protein_coding_gene 4691 4798 . - . ID=Physo126523;biotype=protein_coding;external_name=estExt_Genewise1.C_11780002;logic_name=jgi_physo1_1 scaffold_1178 ensembl transcript 4691 4798 . - . ID=Physo126523;Parent=Physo126523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1178 . exon 4691 4798 . - . ID=Physo126523.1;Parent=Physo126523;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1178 . CDS 4693 4797 . - 0 ID=Physo126523;Parent=Physo126523;rank=1 ##gff-version 3 ##sequence-region scaffold_1177 1 4921 scaffold_1177 . repeat_region 2608 2812 . ? . description=dust scaffold_1177 . repeat_region 3346 3436 . - . description=Polinton-1_PI scaffold_1177 ensembl protein_coding_gene 1118 2185 . - . ID=Physo109743;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_11770001;logic_name=jgi_physo1_1 scaffold_1177 ensembl transcript 1118 2185 . - . ID=Physo109743;Parent=Physo109743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1177 . CDS 1118 2185 . - 0 ID=Physo109743;Parent=Physo109743;rank=1 scaffold_1177 . exon 1118 2185 . - . ID=Physo109743.1;Parent=Physo109743;constitutive=1;rank=1 scaffold_1177 ensembl protein_coding_gene 3588 4691 . + . ID=Physo109744;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_11770002;logic_name=jgi_physo1_1 scaffold_1177 ensembl transcript 3588 4691 . + . ID=Physo109744;Parent=Physo109744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1177 . exon 3588 4691 . + . ID=Physo109744.1;Parent=Physo109744;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1177 . CDS 3624 4691 . + 0 ID=Physo109744;Parent=Physo109744;rank=1 ##gff-version 3 ##sequence-region scaffold_1176 1 4924 scaffold_1176 . repeat_region 2335 3153 . ? . description=dust scaffold_1176 . biological_region 3339 3341 0.999 + . logic_name=eponine scaffold_1176 ensembl protein_coding_gene 57 3525 . - . ID=Physo145418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11760001;logic_name=jgi_physo1_1 scaffold_1176 ensembl transcript 57 3525 . - . ID=Physo145418;Parent=Physo145418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1176 . CDS 57 2258 . - 0 ID=Physo145418;Parent=Physo145418;rank=2 scaffold_1176 . exon 57 2258 . - . ID=Physo145418.2;Parent=Physo145418;constitutive=1;rank=2 scaffold_1176 . CDS 3193 3525 . - 0 ID=Physo145418;Parent=Physo145418;rank=1 scaffold_1176 . exon 3193 3525 . - . ID=Physo145418.1;Parent=Physo145418;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1175 1 4936 scaffold_1175 . biological_region 112 114 0.999 + . logic_name=eponine scaffold_1175 . biological_region 342 343 0.999 + . logic_name=eponine scaffold_1175 . biological_region 369 373 0.999 + . logic_name=eponine scaffold_1175 . repeat_region 393 502 . ? . description=trf scaffold_1175 . biological_region 552 555 0.999 - . logic_name=eponine scaffold_1175 . biological_region 609 609 0.999 + . logic_name=eponine scaffold_1175 . biological_region 776 779 0.999 + . logic_name=eponine scaffold_1175 . repeat_region 1695 2944 . ? . description=dust scaffold_1175 . biological_region 3248 3253 0.999 - . logic_name=eponine scaffold_1175 . biological_region 3286 3290 0.999 - . logic_name=eponine scaffold_1175 . repeat_region 3880 3907 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1064 1 4937 scaffold_1064 . biological_region 134 137 0.999 + . logic_name=eponine scaffold_1064 . biological_region 188 190 0.999 - . logic_name=eponine scaffold_1064 . biological_region 204 206 0.999 - . logic_name=eponine scaffold_1064 . biological_region 262 263 0.999 + . logic_name=eponine scaffold_1064 . biological_region 294 294 0.999 + . logic_name=eponine scaffold_1064 . biological_region 440 444 0.999 + . logic_name=eponine scaffold_1064 . biological_region 762 764 0.999 - . logic_name=eponine scaffold_1064 . biological_region 818 823 0.999 + . logic_name=eponine scaffold_1064 . biological_region 1050 1053 0.999 + . logic_name=eponine scaffold_1064 . repeat_region 1280 1329 . ? . description=trf scaffold_1064 . biological_region 1465 1465 0.999 + . logic_name=eponine scaffold_1064 . biological_region 1614 1615 0.999 + . logic_name=eponine scaffold_1064 . biological_region 1663 1666 0.999 + . logic_name=eponine scaffold_1064 . repeat_region 1803 1848 . ? . description=trf scaffold_1064 . biological_region 1889 1891 0.999 - . logic_name=eponine scaffold_1064 . biological_region 2054 2056 0.999 + . logic_name=eponine scaffold_1064 . biological_region 2213 2213 0.999 + . logic_name=eponine scaffold_1064 . biological_region 2341 2342 0.999 + . logic_name=eponine scaffold_1064 . biological_region 2362 2364 0.999 + . logic_name=eponine scaffold_1064 . biological_region 2747 2753 0.999 - . logic_name=eponine scaffold_1064 . biological_region 2804 2806 0.999 - . logic_name=eponine scaffold_1064 . biological_region 4214 4215 0.999 + . logic_name=eponine scaffold_1064 . biological_region 4363 4364 0.999 + . logic_name=eponine scaffold_1064 . biological_region 4715 4718 0.999 + . logic_name=eponine scaffold_1064 . biological_region 4779 4782 0.999 - . logic_name=eponine scaffold_1064 . biological_region 4786 4793 0.999 + . logic_name=eponine scaffold_1064 . biological_region 4820 4829 0.999 - . logic_name=eponine scaffold_1064 . biological_region 4892 4895 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1174 1 4937 scaffold_1174 . repeat_region 813 866 . ? . description=trf scaffold_1174 . repeat_region 1156 2280 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1171 1 4944 scaffold_1171 . repeat_region 4772 4779 . ? . description=dust scaffold_1171 . biological_region 4798 4808 0.999 + . logic_name=eponine scaffold_1171 ensembl protein_coding_gene 1710 3135 . + . ID=Physo145414;biotype=protein_coding;description=PsAvh153a1PsAvh153a2 [Source:UniProtKB/TrEMBL%3BAcc:E0W583];external_name=estExt_fgenesh1_pg.C_11710001;logic_name=jgi_physo1_1 scaffold_1171 ensembl transcript 1710 3135 . + . ID=Physo145414;Parent=Physo145414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1171 . CDS 1710 2782 . + 0 ID=Physo145414;Parent=Physo145414;rank=1 scaffold_1171 . exon 1710 2782 . + . ID=Physo145414.1;Parent=Physo145414;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1171 . CDS 2826 3135 . + 0 ID=Physo145414;Parent=Physo145414;rank=2 scaffold_1171 . exon 2826 3135 . + . ID=Physo145414.2;Parent=Physo145414;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1170 1 4947 scaffold_1170 . repeat_region 1816 2076 . ? . description=dust scaffold_1170 . biological_region 3694 3696 0.999 + . logic_name=eponine scaffold_1170 ensembl protein_coding_gene 73 1422 . - . ID=Physo145412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11700001;logic_name=jgi_physo1_1 scaffold_1170 ensembl transcript 73 1422 . - . ID=Physo145412;Parent=Physo145412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1170 . CDS 73 846 . - 0 ID=Physo145412;Parent=Physo145412;rank=3 scaffold_1170 . exon 73 846 . - . ID=Physo145412.3;Parent=Physo145412;constitutive=1;rank=3 scaffold_1170 . CDS 955 1074 . - 0 ID=Physo145412;Parent=Physo145412;rank=2 scaffold_1170 . exon 955 1074 . - . ID=Physo145412.2;Parent=Physo145412;constitutive=1;rank=2 scaffold_1170 . CDS 1315 1422 . - 0 ID=Physo145412;Parent=Physo145412;rank=1 scaffold_1170 . exon 1315 1422 . - . ID=Physo145412.1;Parent=Physo145412;constitutive=1;rank=1 scaffold_1170 ensembl protein_coding_gene 2966 4103 . - . ID=Physo145413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11700002;logic_name=jgi_physo1_1 scaffold_1170 ensembl transcript 2966 4103 . - . ID=Physo145413;Parent=Physo145413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1170 . CDS 2966 3578 . - 0 ID=Physo145413;Parent=Physo145413;rank=3 scaffold_1170 . exon 2966 3578 . - . ID=Physo145413.3;Parent=Physo145413;constitutive=1;ensembl_phase=2;rank=3 scaffold_1170 . CDS 3760 3997 . - 0 ID=Physo145413;Parent=Physo145413;rank=2 scaffold_1170 . exon 3760 3997 . - . ID=Physo145413.2;Parent=Physo145413;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1170 . CDS 4046 4103 . - 0 ID=Physo145413;Parent=Physo145413;rank=1 scaffold_1170 . exon 4046 4103 . - . ID=Physo145413.1;Parent=Physo145413;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1169 1 4954 scaffold_1169 . repeat_region 241 495 . ? . description=trf scaffold_1169 . repeat_region 298 362 . ? . description=trf scaffold_1169 . repeat_region 404 549 . ? . description=trf scaffold_1169 . repeat_region 2446 3672 . ? . description=dust scaffold_1169 . repeat_region 3673 4026 . ? . description=trf scaffold_1169 . repeat_region 3702 3738 . ? . description=trf scaffold_1169 . repeat_region 3705 4917 . ? . description=trf scaffold_1169 . repeat_region 3723 3999 . ? . description=trf scaffold_1169 . repeat_region 3723 3999 . ? . description=trf scaffold_1169 . repeat_region 3761 4044 . ? . description=trf scaffold_1169 . repeat_region 3761 4314 . ? . description=trf scaffold_1169 . repeat_region 3886 4170 . ? . description=trf scaffold_1169 . repeat_region 3970 4403 . ? . description=trf scaffold_1169 . repeat_region 4022 4779 . ? . description=trf scaffold_1169 . repeat_region 4031 4773 . ? . description=trf scaffold_1169 . repeat_region 4175 4763 . ? . description=trf scaffold_1169 . repeat_region 4425 4512 . ? . description=trf scaffold_1169 . repeat_region 4535 4818 . ? . description=trf scaffold_1169 . repeat_region 4562 4851 . ? . description=trf scaffold_1169 . repeat_region 4805 4899 . ? . description=trf scaffold_1169 ensembl protein_coding_gene 151 881 . + . ID=Physo145410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11690001;logic_name=jgi_physo1_1 scaffold_1169 ensembl transcript 151 881 . + . ID=Physo145410;Parent=Physo145410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1169 . CDS 151 191 . + 0 ID=Physo145410;Parent=Physo145410;rank=1 scaffold_1169 . exon 151 191 . + . ID=Physo145410.1;Parent=Physo145410;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1169 . CDS 396 618 . + 0 ID=Physo145410;Parent=Physo145410;rank=2 scaffold_1169 . exon 396 618 . + . ID=Physo145410.2;Parent=Physo145410;constitutive=1;ensembl_phase=2;rank=2 scaffold_1169 . CDS 819 881 . + 0 ID=Physo145410;Parent=Physo145410;rank=3 scaffold_1169 . exon 819 881 . + . ID=Physo145410.3;Parent=Physo145410;constitutive=1;rank=3 scaffold_1169 ensembl protein_coding_gene 2415 4917 . + . ID=Physo145411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11690002;logic_name=jgi_physo1_1 scaffold_1169 ensembl transcript 2415 4917 . + . ID=Physo145411;Parent=Physo145411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1169 . CDS 2415 2440 . + 0 ID=Physo145411;Parent=Physo145411;rank=1 scaffold_1169 . exon 2415 2440 . + . ID=Physo145411.1;Parent=Physo145411;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1169 . CDS 3735 4671 . + 0 ID=Physo145411;Parent=Physo145411;rank=2 scaffold_1169 . exon 3735 4671 . + . ID=Physo145411.2;Parent=Physo145411;constitutive=1;ensembl_phase=2;rank=2 scaffold_1169 . CDS 4733 4915 . + 0 ID=Physo145411;Parent=Physo145411;rank=3 scaffold_1169 . exon 4733 4917 . + . ID=Physo145411.3;Parent=Physo145411;constitutive=1;ensembl_end_phase=-1;rank=3 ##gff-version 3 ##sequence-region scaffold_1167 1 4977 scaffold_1167 . biological_region 1152 1155 0.999 + . logic_name=eponine scaffold_1167 . repeat_region 1841 1873 . ? . description=trf scaffold_1167 . repeat_region 4326 4420 . ? . description=trf scaffold_1167 . repeat_region 4335 4399 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1166 1 4985 scaffold_1166 . repeat_region 2091 3466 . ? . description=dust scaffold_1166 . biological_region 4818 4821 0.999 + . logic_name=eponine scaffold_1166 . repeat_region 4875 4935 . ? . description=trf scaffold_1166 . repeat_region 4888 4967 . ? . description=dust scaffold_1166 . repeat_region 4894 4982 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1165 1 4992 scaffold_1165 . repeat_region 255 262 . ? . description=dust scaffold_1165 . repeat_region 1274 4130 . ? . description=dust scaffold_1165 ensembl protein_coding_gene 4159 4779 . + . ID=Physo126498;biotype=protein_coding;external_name=estExt_Genewise1.C_11650001;logic_name=jgi_physo1_1 scaffold_1165 ensembl transcript 4159 4779 . + . ID=Physo126498;Parent=Physo126498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1165 . exon 4159 4779 . + . ID=Physo126498.1;Parent=Physo126498;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1165 . CDS 4240 4779 . + 0 ID=Physo126498;Parent=Physo126498;rank=1 scaffold_1165 ensembl protein_coding_gene 162 1076 . - . ID=Physo145409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11650001;logic_name=jgi_physo1_1 scaffold_1165 ensembl transcript 162 1076 . - . ID=Physo145409;Parent=Physo145409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1165 . exon 162 382 . - . ID=Physo145409.4;Parent=Physo145409;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_1165 . CDS 293 382 . - 0 ID=Physo145409;Parent=Physo145409;rank=4 scaffold_1165 . CDS 469 675 . - 0 ID=Physo145409;Parent=Physo145409;rank=3 scaffold_1165 . exon 469 675 . - . ID=Physo145409.3;Parent=Physo145409;constitutive=1;rank=3 scaffold_1165 . CDS 762 832 . - 0 ID=Physo145409;Parent=Physo145409;rank=2 scaffold_1165 . exon 762 832 . - . ID=Physo145409.2;Parent=Physo145409;constitutive=1;ensembl_phase=1;rank=2 scaffold_1165 . CDS 895 1060 . - 0 ID=Physo145409;Parent=Physo145409;rank=1 scaffold_1165 . exon 895 1076 . - . ID=Physo145409.1;Parent=Physo145409;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1173 1 4993 scaffold_1173 . repeat_region 3615 3622 . ? . description=dust scaffold_1173 . repeat_region 3704 3753 . ? . description=dust scaffold_1173 . biological_region 4285 4288 0.999 + . logic_name=eponine scaffold_1173 ensembl protein_coding_gene 3779 4447 . - . ID=Physo126507;biotype=protein_coding;external_name=estExt_Genewise1.C_11730001;logic_name=jgi_physo1_1 scaffold_1173 ensembl transcript 3779 4447 . - . ID=Physo126507;Parent=Physo126507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1173 . CDS 3779 4153 . - 0 ID=Physo126507;Parent=Physo126507;rank=1 scaffold_1173 . exon 3779 4447 . - . ID=Physo126507.1;Parent=Physo126507;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1173 ensembl protein_coding_gene 2057 3400 . - . ID=Physo145417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11730001;logic_name=jgi_physo1_1 scaffold_1173 ensembl transcript 2057 3400 . - . ID=Physo145417;Parent=Physo145417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1173 . exon 2057 2668 . - . ID=Physo145417.4;Parent=Physo145417;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_1173 . CDS 2108 2668 . - 0 ID=Physo145417;Parent=Physo145417;rank=2 scaffold_1173 . CDS 2741 2965 . - 0 ID=Physo145417;Parent=Physo145417;rank=1 scaffold_1173 . exon 2741 3101 . - . ID=Physo145417.3;Parent=Physo145417;constitutive=1;ensembl_phase=-1;rank=3 scaffold_1173 . exon 3173 3216 . - . ID=Physo145417.2;Parent=Physo145417;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_1173 . exon 3359 3400 . - . ID=Physo145417.1;Parent=Physo145417;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1163 1 4997 scaffold_1163 . repeat_region 75 117 . ? . description=trf scaffold_1163 . repeat_region 85 113 . ? . description=trf scaffold_1163 . repeat_region 933 2841 . - . description=Polinton-1_PI scaffold_1163 . repeat_region 1518 1525 . ? . description=dust scaffold_1163 . repeat_region 2842 3792 . ? . description=dust scaffold_1163 . repeat_region 3793 4037 . - . description=Polinton-1_PI scaffold_1163 . repeat_region 4115 4997 . - . description=Polinton-1_PI scaffold_1163 . repeat_region 4449 4459 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1172 1 4997 scaffold_1172 . repeat_region 1857 2304 . ? . description=dust scaffold_1172 . biological_region 2517 2518 0.999 + . logic_name=eponine scaffold_1172 ensembl protein_coding_gene 762 2967 . - . ID=Physo145415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11720001;logic_name=jgi_physo1_1 scaffold_1172 ensembl transcript 762 2967 . - . ID=Physo145415;Parent=Physo145415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1172 . CDS 762 1851 . - 0 ID=Physo145415;Parent=Physo145415;rank=2 scaffold_1172 . exon 762 1851 . - . ID=Physo145415.2;Parent=Physo145415;constitutive=1;ensembl_phase=2;rank=2 scaffold_1172 . CDS 2315 2967 . - 0 ID=Physo145415;Parent=Physo145415;rank=1 scaffold_1172 . exon 2315 2967 . - . ID=Physo145415.1;Parent=Physo145415;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1172 ensembl protein_coding_gene 3942 4924 . - . ID=Physo145416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11720002;logic_name=jgi_physo1_1 scaffold_1172 ensembl transcript 3942 4924 . - . ID=Physo145416;Parent=Physo145416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1172 . CDS 3942 4883 . - 0 ID=Physo145416;Parent=Physo145416;rank=1 scaffold_1172 . exon 3942 4924 . - . ID=Physo145416.1;Parent=Physo145416;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1164 1 5003 scaffold_1164 . repeat_region 2614 3280 . ? . description=dust scaffold_1164 . repeat_region 4746 4782 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1162 1 5004 scaffold_1162 . repeat_region 257 434 . ? . description=dust scaffold_1162 . repeat_region 265 486 . ? . description=trf scaffold_1162 . biological_region 1746 1746 0.999 - . logic_name=eponine scaffold_1162 . repeat_region 2484 2941 . ? . description=dust scaffold_1162 . biological_region 3448 3452 0.999 - . logic_name=eponine scaffold_1162 . biological_region 3538 3538 0.999 + . logic_name=eponine scaffold_1162 . repeat_region 4721 4767 . ? . description=trf scaffold_1162 ensembl protein_coding_gene 161 2144 . + . ID=Physo145407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11620001;logic_name=jgi_physo1_1 scaffold_1162 ensembl transcript 161 2144 . + . ID=Physo145407;Parent=Physo145407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1162 . exon 161 175 . + . ID=Physo145407.1;Parent=Physo145407;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1162 . exon 253 406 . + . ID=Physo145407.2;Parent=Physo145407;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_1162 . exon 937 1032 . + . ID=Physo145407.3;Parent=Physo145407;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_1162 . exon 1382 1724 . + . ID=Physo145407.4;Parent=Physo145407;constitutive=1;ensembl_phase=-1;rank=4 scaffold_1162 . CDS 1461 1724 . + 0 ID=Physo145407;Parent=Physo145407;rank=1 scaffold_1162 . CDS 1747 1863 . + 0 ID=Physo145407;Parent=Physo145407;rank=2 scaffold_1162 . exon 1747 1863 . + . ID=Physo145407.5;Parent=Physo145407;constitutive=1;rank=5 scaffold_1162 . CDS 2031 2144 . + 0 ID=Physo145407;Parent=Physo145407;rank=3 scaffold_1162 . exon 2031 2144 . + . ID=Physo145407.6;Parent=Physo145407;constitutive=1;rank=6 scaffold_1162 ensembl protein_coding_gene 4381 5001 . + . ID=Physo145408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11620002;logic_name=jgi_physo1_1 scaffold_1162 ensembl transcript 4381 5001 . + . ID=Physo145408;Parent=Physo145408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1162 . exon 4381 5001 . + . ID=Physo145408.1;Parent=Physo145408;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1162 . CDS 4422 5000 . + 0 ID=Physo145408;Parent=Physo145408;rank=1 ##gff-version 3 ##sequence-region scaffold_1168 1 5018 scaffold_1168 . repeat_region 244 374 . ? . description=trf scaffold_1168 . repeat_region 359 414 . ? . description=trf scaffold_1168 . repeat_region 1683 2732 . ? . description=dust scaffold_1168 . repeat_region 4053 4102 . ? . description=dust scaffold_1168 . repeat_region 4662 4671 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1161 1 5044 scaffold_1161 . repeat_region 594 642 . ? . description=trf scaffold_1161 . repeat_region 830 837 . ? . description=dust scaffold_1161 . repeat_region 882 941 . - . description=LSU-rRNA_Hca scaffold_1161 . repeat_region 1078 3167 . - . description=LSU-rRNA_Hca scaffold_1161 . biological_region 2561 2566 0.999 + . logic_name=eponine scaffold_1161 . biological_region 2606 2611 0.999 - . logic_name=eponine scaffold_1161 . biological_region 2855 2862 0.999 - . logic_name=eponine scaffold_1161 . repeat_region 3169 3351 . ? . description=dust scaffold_1161 . repeat_region 3352 3529 . - . description=LSU-rRNA_Hca scaffold_1161 . biological_region 3565 3569 0.999 + . logic_name=eponine scaffold_1161 . biological_region 3621 3624 0.999 + . logic_name=eponine scaffold_1161 . biological_region 3624 3629 0.999 - . logic_name=eponine scaffold_1161 . biological_region 3660 3667 0.999 - . logic_name=eponine scaffold_1161 . biological_region 3718 3719 0.999 + . logic_name=eponine scaffold_1161 . biological_region 3966 3971 0.999 - . logic_name=eponine scaffold_1161 . biological_region 3985 3993 0.999 + . logic_name=eponine scaffold_1161 . repeat_region 4123 5044 . - . description=SSU-rRNA_Tps scaffold_1161 . biological_region 4295 4298 0.999 - . logic_name=eponine scaffold_1161 ensembl rRNA_gene 902 3893 . - . ID=EPrPSOG00000000009;biotype=rRNA;description=28s_rRNA [Source:RNAMMER%3BAcc:28s_rRNA];external_name=28s_rRNA;logic_name=ncrna_eg scaffold_1161 ensembl rRNA 902 3893 . - . ID=EPrPSOT00000000009;Parent=EPrPSOG00000000009;biotype=rRNA;logic_name=ncrna_eg scaffold_1161 . exon 902 3893 . - . ID=EPrPSOE00000000009;Parent=EPrPSOT00000000009;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1161 ensembl protein_coding_gene 1334 2083 . + . ID=Physo109742;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_11610001;logic_name=jgi_physo1_1 scaffold_1161 ensembl transcript 1334 2083 . + . ID=Physo109742;Parent=Physo109742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1161 . CDS 1334 1415 . + 0 ID=Physo109742;Parent=Physo109742;rank=1 scaffold_1161 . exon 1334 1415 . + . ID=Physo109742.1;Parent=Physo109742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1161 . CDS 1461 1483 . + 0 ID=Physo109742;Parent=Physo109742;rank=2 scaffold_1161 . exon 1461 1483 . + . ID=Physo109742.2;Parent=Physo109742;constitutive=1;ensembl_phase=1;rank=2 scaffold_1161 . CDS 1508 1699 . + 0 ID=Physo109742;Parent=Physo109742;rank=3 scaffold_1161 . exon 1508 1699 . + . ID=Physo109742.3;Parent=Physo109742;constitutive=1;rank=3 scaffold_1161 . CDS 1733 1779 . + 0 ID=Physo109742;Parent=Physo109742;rank=4 scaffold_1161 . exon 1733 1779 . + . ID=Physo109742.4;Parent=Physo109742;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1161 . CDS 1810 1877 . + 0 ID=Physo109742;Parent=Physo109742;rank=5 scaffold_1161 . exon 1810 1877 . + . ID=Physo109742.5;Parent=Physo109742;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1161 . CDS 1932 2083 . + 0 ID=Physo109742;Parent=Physo109742;rank=6 scaffold_1161 . exon 1932 2083 . + . ID=Physo109742.6;Parent=Physo109742;constitutive=1;ensembl_phase=1;rank=6 scaffold_1161 ensembl protein_coding_gene 3787 5044 . - . ID=Physo126485;biotype=protein_coding;external_name=estExt_Genewise1.C_11610007;logic_name=jgi_physo1_1 scaffold_1161 ensembl transcript 3787 5044 . - . ID=Physo126485;Parent=Physo126485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1161 . exon 3787 3864 . - . ID=Physo126485.5;Parent=Physo126485;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_1161 . exon 4121 4181 . - . ID=Physo126485.4;Parent=Physo126485;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_1161 . exon 4250 4547 . - . ID=Physo126485.3;Parent=Physo126485;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_1161 . exon 4590 4853 . - . ID=Physo126485.2;Parent=Physo126485;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1161 . CDS 4741 4853 . - 0 ID=Physo126485;Parent=Physo126485;rank=2 scaffold_1161 . CDS 4877 4895 . - 0 ID=Physo126485;Parent=Physo126485;rank=1 scaffold_1161 . exon 4877 5044 . - . ID=Physo126485.1;Parent=Physo126485;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1161 ensembl protein_coding_gene 2504 3167 . + . ID=Physo126495;biotype=protein_coding;external_name=estExt_Genewise1.C_11610017;logic_name=jgi_physo1_1 scaffold_1161 ensembl transcript 2504 3167 . + . ID=Physo126495;Parent=Physo126495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1161 . exon 2504 2637 . + . ID=Physo126495.1;Parent=Physo126495;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1161 . exon 2663 3167 . + . ID=Physo126495.2;Parent=Physo126495;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_1161 . CDS 2699 2959 . + 0 ID=Physo126495;Parent=Physo126495;rank=1 ##gff-version 3 ##sequence-region scaffold_1159 1 5064 scaffold_1159 . biological_region 1184 1185 0.999 - . logic_name=eponine scaffold_1159 . biological_region 1779 1781 0.999 - . logic_name=eponine scaffold_1159 . repeat_region 2467 4088 . ? . description=dust scaffold_1159 . biological_region 4186 4186 0.999 + . logic_name=eponine scaffold_1159 ensembl protein_coding_gene 1050 2105 . + . ID=Physo145404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11590001;logic_name=jgi_physo1_1 scaffold_1159 ensembl transcript 1050 2105 . + . ID=Physo145404;Parent=Physo145404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1159 . CDS 1050 2105 . + 0 ID=Physo145404;Parent=Physo145404;rank=1 scaffold_1159 . exon 1050 2105 . + . ID=Physo145404.1;Parent=Physo145404;constitutive=1;rank=1 scaffold_1159 ensembl protein_coding_gene 4089 4969 . + . ID=Physo145405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11590002;logic_name=jgi_physo1_1 scaffold_1159 ensembl transcript 4089 4969 . + . ID=Physo145405;Parent=Physo145405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1159 . exon 4089 4969 . + . ID=Physo145405.1;Parent=Physo145405;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1159 . CDS 4103 4969 . + 0 ID=Physo145405;Parent=Physo145405;rank=1 ##gff-version 3 ##sequence-region scaffold_1157 1 5066 scaffold_1157 . repeat_region 3792 3799 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1155 1 5093 scaffold_1155 . repeat_region 184 202 . ? . description=dust scaffold_1155 . repeat_region 1694 1701 . ? . description=dust scaffold_1155 . repeat_region 2397 3982 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1154 1 5094 scaffold_1154 ensembl protein_coding_gene 1842 2555 . - . ID=Physo109740;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_11540001;logic_name=jgi_physo1_1 scaffold_1154 ensembl transcript 1842 2555 . - . ID=Physo109740;Parent=Physo109740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1154 . CDS 1842 2498 . - 0 ID=Physo109740;Parent=Physo109740;rank=1 scaffold_1154 . exon 1842 2499 . - . ID=Physo109740.2;Parent=Physo109740;constitutive=1;ensembl_phase=-1;rank=2 scaffold_1154 . exon 2546 2555 . - . ID=Physo109740.1;Parent=Physo109740;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1154 ensembl protein_coding_gene 3612 4349 . + . ID=Physo109741;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_11540002;logic_name=jgi_physo1_1 scaffold_1154 ensembl transcript 3612 4349 . + . ID=Physo109741;Parent=Physo109741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1154 . exon 3612 4261 . + . ID=Physo109741.1;Parent=Physo109741;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1154 . CDS 3650 4261 . + 0 ID=Physo109741;Parent=Physo109741;rank=1 scaffold_1154 . CDS 4314 4349 . + 0 ID=Physo109741;Parent=Physo109741;rank=2 scaffold_1154 . exon 4314 4349 . + . ID=Physo109741.2;Parent=Physo109741;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1153 1 5098 scaffold_1153 . biological_region 804 807 0.999 - . logic_name=eponine scaffold_1153 . biological_region 813 813 0.999 + . logic_name=eponine scaffold_1153 . biological_region 860 863 0.999 - . logic_name=eponine scaffold_1153 . biological_region 1698 1699 0.999 - . logic_name=eponine scaffold_1153 ensembl protein_coding_gene 1 438 . - . ID=Physo126475;biotype=protein_coding;external_name=estExt_Genewise1.C_11530001;logic_name=jgi_physo1_1 scaffold_1153 ensembl transcript 1 438 . - . ID=Physo126475;Parent=Physo126475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1153 . CDS 1 438 . - 0 ID=Physo126475;Parent=Physo126475;rank=1 scaffold_1153 . exon 1 438 . - . ID=Physo126475.1;Parent=Physo126475;constitutive=1;rank=1 scaffold_1153 ensembl protein_coding_gene 607 3661 . + . ID=Physo145400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11530002;logic_name=jgi_physo1_1 scaffold_1153 ensembl transcript 607 3661 . + . ID=Physo145400;Parent=Physo145400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1153 . CDS 607 929 . + 0 ID=Physo145400;Parent=Physo145400;rank=1 scaffold_1153 . exon 607 929 . + . ID=Physo145400.1;Parent=Physo145400;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1153 . CDS 1024 3661 . + 0 ID=Physo145400;Parent=Physo145400;rank=2 scaffold_1153 . exon 1024 3661 . + . ID=Physo145400.2;Parent=Physo145400;constitutive=1;ensembl_phase=2;rank=2 scaffold_1153 ensembl protein_coding_gene 4742 5071 . + . ID=Physo145401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11530003;logic_name=jgi_physo1_1 scaffold_1153 ensembl transcript 4742 5071 . + . ID=Physo145401;Parent=Physo145401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1153 . CDS 4742 5071 . + 0 ID=Physo145401;Parent=Physo145401;rank=1 scaffold_1153 . exon 4742 5071 . + . ID=Physo145401.1;Parent=Physo145401;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1152 1 5127 scaffold_1152 . repeat_region 1 774 . + . description=GypsyPi-1c_I-int scaffold_1152 . biological_region 853 853 0.999 - . logic_name=eponine scaffold_1152 . biological_region 1212 1217 0.999 - . logic_name=eponine scaffold_1152 . repeat_region 1414 2833 . ? . description=dust scaffold_1152 . repeat_region 2874 2893 . ? . description=trf scaffold_1152 . repeat_region 5000 5007 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1149 1 5136 scaffold_1149 . repeat_region 966 3720 . ? . description=dust scaffold_1149 . biological_region 4595 4597 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1150 1 5137 scaffold_1150 . biological_region 206 211 0.999 - . logic_name=eponine scaffold_1150 . biological_region 313 314 0.999 + . logic_name=eponine scaffold_1150 . biological_region 401 404 0.999 - . logic_name=eponine scaffold_1150 . biological_region 486 488 0.999 - . logic_name=eponine scaffold_1150 ensembl protein_coding_gene 58 5065 . + . ID=Physo145398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11500001;logic_name=jgi_physo1_1 scaffold_1150 ensembl transcript 58 5065 . + . ID=Physo145398;Parent=Physo145398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1150 . exon 58 2299 . + . ID=Physo145398.1;Parent=Physo145398;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1150 . CDS 95 2299 . + 0 ID=Physo145398;Parent=Physo145398;rank=1 scaffold_1150 . CDS 2432 5065 . + 0 ID=Physo145398;Parent=Physo145398;rank=2 scaffold_1150 . exon 2432 5065 . + . ID=Physo145398.2;Parent=Physo145398;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1160 1 5148 ##gff-version 3 ##sequence-region scaffold_1147 1 5154 scaffold_1147 . repeat_region 2071 2362 . ? . description=dust scaffold_1147 . biological_region 2838 2838 0.999 + . logic_name=eponine scaffold_1147 . biological_region 3001 3004 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1146 1 5177 scaffold_1146 . repeat_region 75 104 . ? . description=trf scaffold_1146 . repeat_region 77 104 . ? . description=dust scaffold_1146 . repeat_region 78 104 . ? . description=trf scaffold_1146 . biological_region 100 100 0.999 + . logic_name=eponine scaffold_1146 . biological_region 169 171 0.999 - . logic_name=eponine scaffold_1146 . biological_region 539 543 0.999 - . logic_name=eponine scaffold_1146 . biological_region 958 964 0.999 + . logic_name=eponine scaffold_1146 . biological_region 1001 1003 0.999 + . logic_name=eponine scaffold_1146 . biological_region 1556 1560 0.999 - . logic_name=eponine scaffold_1146 . biological_region 1634 1638 0.999 + . logic_name=eponine scaffold_1146 . repeat_region 3394 3443 . ? . description=dust scaffold_1146 . repeat_region 4198 4394 . ? . description=dust scaffold_1146 . repeat_region 4557 4564 . ? . description=dust scaffold_1146 . repeat_region 4728 4771 . ? . description=dust scaffold_1146 . biological_region 5086 5087 0.999 - . logic_name=eponine scaffold_1146 ensembl protein_coding_gene 1 1935 . + . ID=Physo145396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11460001;logic_name=jgi_physo1_1 scaffold_1146 ensembl transcript 1 1935 . + . ID=Physo145396;Parent=Physo145396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1146 . exon 1 1935 . + . ID=Physo145396.1;Parent=Physo145396;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1146 . CDS 126 1739 . + 0 ID=Physo145396;Parent=Physo145396;rank=1 scaffold_1146 ensembl protein_coding_gene 2144 3307 . + . ID=Physo145397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11460002;logic_name=jgi_physo1_1 scaffold_1146 ensembl transcript 2144 3307 . + . ID=Physo145397;Parent=Physo145397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1146 . exon 2144 2201 . + . ID=Physo145397.1;Parent=Physo145397;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1146 . CDS 2157 2201 . + 0 ID=Physo145397;Parent=Physo145397;rank=1 scaffold_1146 . CDS 2318 2426 . + 0 ID=Physo145397;Parent=Physo145397;rank=2 scaffold_1146 . exon 2318 2426 . + . ID=Physo145397.2;Parent=Physo145397;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1146 . CDS 2499 2580 . + 0 ID=Physo145397;Parent=Physo145397;rank=3 scaffold_1146 . exon 2499 2580 . + . ID=Physo145397.3;Parent=Physo145397;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1146 . CDS 2650 2732 . + 0 ID=Physo145397;Parent=Physo145397;rank=4 scaffold_1146 . exon 2650 2732 . + . ID=Physo145397.4;Parent=Physo145397;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1146 . CDS 2811 2902 . + 0 ID=Physo145397;Parent=Physo145397;rank=5 scaffold_1146 . exon 2811 2902 . + . ID=Physo145397.5;Parent=Physo145397;constitutive=1;ensembl_phase=1;rank=5 scaffold_1146 . CDS 2981 3120 . + 0 ID=Physo145397;Parent=Physo145397;rank=6 scaffold_1146 . exon 2981 3120 . + . ID=Physo145397.6;Parent=Physo145397;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1146 . CDS 3214 3307 . + 0 ID=Physo145397;Parent=Physo145397;rank=7 scaffold_1146 . exon 3214 3307 . + . ID=Physo145397.7;Parent=Physo145397;constitutive=1;ensembl_phase=2;rank=7 ##gff-version 3 ##sequence-region scaffold_1145 1 5178 scaffold_1145 . biological_region 66 69 0.999 + . logic_name=eponine scaffold_1145 . biological_region 310 317 0.999 - . logic_name=eponine scaffold_1145 . biological_region 710 713 0.999 - . logic_name=eponine scaffold_1145 ensembl protein_coding_gene 2118 3224 . - . ID=Physo109739;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_11450001;logic_name=jgi_physo1_1 scaffold_1145 ensembl transcript 2118 3224 . - . ID=Physo109739;Parent=Physo109739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1145 . CDS 2118 2203 . - 0 ID=Physo109739;Parent=Physo109739;rank=3 scaffold_1145 . exon 2118 2203 . - . ID=Physo109739.3;Parent=Physo109739;constitutive=1;ensembl_phase=1;rank=3 scaffold_1145 . CDS 2284 2893 . - 0 ID=Physo109739;Parent=Physo109739;rank=2 scaffold_1145 . exon 2284 2893 . - . ID=Physo109739.2;Parent=Physo109739;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1145 . CDS 2958 3224 . - 0 ID=Physo109739;Parent=Physo109739;rank=1 scaffold_1145 . exon 2958 3224 . - . ID=Physo109739.1;Parent=Physo109739;constitutive=1;rank=1 scaffold_1145 ensembl protein_coding_gene 125 1288 . + . ID=Physo145393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11450001;logic_name=jgi_physo1_1 scaffold_1145 ensembl transcript 125 1288 . + . ID=Physo145393;Parent=Physo145393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1145 . CDS 125 400 . + 0 ID=Physo145393;Parent=Physo145393;rank=1 scaffold_1145 . exon 125 400 . + . ID=Physo145393.1;Parent=Physo145393;constitutive=1;rank=1 scaffold_1145 . CDS 466 1072 . + 0 ID=Physo145393;Parent=Physo145393;rank=2 scaffold_1145 . exon 466 1072 . + . ID=Physo145393.2;Parent=Physo145393;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1145 . CDS 1145 1230 . + 0 ID=Physo145393;Parent=Physo145393;rank=3 scaffold_1145 . exon 1145 1288 . + . ID=Physo145393.3;Parent=Physo145393;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_1145 ensembl protein_coding_gene 3701 5026 . - . ID=Physo145395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11450003;logic_name=jgi_physo1_1 scaffold_1145 ensembl transcript 3701 5026 . - . ID=Physo145395;Parent=Physo145395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1145 . CDS 3701 5026 . - 0 ID=Physo145395;Parent=Physo145395;rank=1 scaffold_1145 . exon 3701 5026 . - . ID=Physo145395.1;Parent=Physo145395;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1151 1 5181 scaffold_1151 . biological_region 271 271 0.999 + . logic_name=eponine scaffold_1151 . biological_region 391 394 0.999 - . logic_name=eponine scaffold_1151 . repeat_region 414 1333 . - . description=GypsyPi-1c_I-int scaffold_1151 . repeat_region 1334 1383 . ? . description=dust scaffold_1151 . biological_region 1914 1916 0.999 - . logic_name=eponine scaffold_1151 . biological_region 2209 2209 0.999 - . logic_name=eponine scaffold_1151 . biological_region 2273 2276 0.999 - . logic_name=eponine scaffold_1151 . biological_region 2297 2298 0.999 - . logic_name=eponine scaffold_1151 . repeat_region 2706 3235 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_700 1 5186 scaffold_700 . repeat_region 1 5186 . ? . description=trf scaffold_700 ensembl protein_coding_gene 49 5172 . + . ID=Physo145242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7000001;logic_name=jgi_physo1_1 scaffold_700 ensembl transcript 49 5172 . + . ID=Physo145242;Parent=Physo145242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_700 . exon 49 216 . + . ID=Physo145242.1;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_700 . CDS 177 216 . + 0 ID=Physo145242;Parent=Physo145242;rank=1 scaffold_700 . CDS 263 430 . + 0 ID=Physo145242;Parent=Physo145242;rank=2 scaffold_700 . exon 263 430 . + . ID=Physo145242.2;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_700 . CDS 477 644 . + 0 ID=Physo145242;Parent=Physo145242;rank=3 scaffold_700 . exon 477 644 . + . ID=Physo145242.3;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_700 . CDS 691 858 . + 0 ID=Physo145242;Parent=Physo145242;rank=4 scaffold_700 . exon 691 858 . + . ID=Physo145242.4;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_700 . CDS 992 1078 . + 0 ID=Physo145242;Parent=Physo145242;rank=5 scaffold_700 . exon 992 1078 . + . ID=Physo145242.5;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_700 . CDS 1125 1292 . + 0 ID=Physo145242;Parent=Physo145242;rank=6 scaffold_700 . exon 1125 1292 . + . ID=Physo145242.6;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_700 . CDS 1339 1506 . + 0 ID=Physo145242;Parent=Physo145242;rank=7 scaffold_700 . exon 1339 1506 . + . ID=Physo145242.7;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_700 . CDS 1553 1720 . + 0 ID=Physo145242;Parent=Physo145242;rank=8 scaffold_700 . exon 1553 1720 . + . ID=Physo145242.8;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_700 . CDS 1767 1934 . + 0 ID=Physo145242;Parent=Physo145242;rank=9 scaffold_700 . exon 1767 1934 . + . ID=Physo145242.9;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_700 . CDS 2008 2148 . + 0 ID=Physo145242;Parent=Physo145242;rank=10 scaffold_700 . exon 2008 2148 . + . ID=Physo145242.10;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_700 . CDS 2195 2346 . + 0 ID=Physo145242;Parent=Physo145242;rank=11 scaffold_700 . exon 2195 2346 . + . ID=Physo145242.11;Parent=Physo145242;constitutive=1;ensembl_phase=1;rank=11 scaffold_700 . CDS 2468 2647 . + 0 ID=Physo145242;Parent=Physo145242;rank=12 scaffold_700 . exon 2468 2647 . + . ID=Physo145242.12;Parent=Physo145242;constitutive=1;rank=12 scaffold_700 . CDS 2686 2794 . + 0 ID=Physo145242;Parent=Physo145242;rank=13 scaffold_700 . exon 2686 2794 . + . ID=Physo145242.13;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_700 . CDS 2868 3008 . + 0 ID=Physo145242;Parent=Physo145242;rank=14 scaffold_700 . exon 2868 3008 . + . ID=Physo145242.14;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_700 . CDS 3082 3222 . + 0 ID=Physo145242;Parent=Physo145242;rank=15 scaffold_700 . exon 3082 3222 . + . ID=Physo145242.15;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_700 . CDS 3355 3441 . + 0 ID=Physo145242;Parent=Physo145242;rank=16 scaffold_700 . exon 3355 3441 . + . ID=Physo145242.16;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=16 scaffold_700 . CDS 3488 3655 . + 0 ID=Physo145242;Parent=Physo145242;rank=17 scaffold_700 . exon 3488 3655 . + . ID=Physo145242.17;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=17 scaffold_700 . CDS 3702 3869 . + 0 ID=Physo145242;Parent=Physo145242;rank=18 scaffold_700 . exon 3702 3869 . + . ID=Physo145242.18;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=18 scaffold_700 . CDS 3943 4083 . + 0 ID=Physo145242;Parent=Physo145242;rank=19 scaffold_700 . exon 3943 4083 . + . ID=Physo145242.19;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=19 scaffold_700 . CDS 4130 4174 . + 0 ID=Physo145242;Parent=Physo145242;rank=20 scaffold_700 . exon 4130 4174 . + . ID=Physo145242.20;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=20 scaffold_700 . CDS 4216 4302 . + 0 ID=Physo145242;Parent=Physo145242;rank=21 scaffold_700 . exon 4216 4302 . + . ID=Physo145242.21;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=21 scaffold_700 . CDS 4349 4516 . + 0 ID=Physo145242;Parent=Physo145242;rank=22 scaffold_700 . exon 4349 4516 . + . ID=Physo145242.22;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=22 scaffold_700 . CDS 4590 4730 . + 0 ID=Physo145242;Parent=Physo145242;rank=23 scaffold_700 . exon 4590 4730 . + . ID=Physo145242.23;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=23 scaffold_700 . CDS 4777 4923 . + 0 ID=Physo145242;Parent=Physo145242;rank=24 scaffold_700 . exon 4777 4923 . + . ID=Physo145242.24;Parent=Physo145242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=24 scaffold_700 . CDS 5018 5172 . + 0 ID=Physo145242;Parent=Physo145242;rank=25 scaffold_700 . exon 5018 5172 . + . ID=Physo145242.25;Parent=Physo145242;constitutive=1;ensembl_phase=1;rank=25 ##gff-version 3 ##sequence-region scaffold_1144 1 5208 scaffold_1144 . repeat_region 1324 3980 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1143 1 5212 scaffold_1143 . biological_region 993 996 0.999 + . logic_name=eponine scaffold_1143 . biological_region 3301 3308 0.999 + . logic_name=eponine scaffold_1143 . biological_region 3414 3417 0.999 + . logic_name=eponine scaffold_1143 . biological_region 3469 3469 0.999 + . logic_name=eponine scaffold_1143 . biological_region 3534 3540 0.999 - . logic_name=eponine scaffold_1143 . biological_region 3796 3799 0.999 - . logic_name=eponine scaffold_1143 . biological_region 3883 3890 0.999 - . logic_name=eponine scaffold_1143 . biological_region 3960 3962 0.999 - . logic_name=eponine scaffold_1143 . biological_region 3971 3973 0.999 + . logic_name=eponine scaffold_1143 . biological_region 4270 4273 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1142 1 5222 scaffold_1142 . repeat_region 1688 2880 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1141 1 5257 scaffold_1141 . repeat_region 2486 2640 . ? . description=dust scaffold_1141 . repeat_region 2827 2835 . ? . description=dust scaffold_1141 . repeat_region 3278 3287 . ? . description=dust scaffold_1141 . biological_region 3878 3883 0.999 - . logic_name=eponine scaffold_1141 . biological_region 3925 3928 0.999 - . logic_name=eponine scaffold_1141 ensembl protein_coding_gene 152 1280 . - . ID=Physo126461;biotype=protein_coding;external_name=estExt_Genewise1.C_11410003;logic_name=jgi_physo1_1 scaffold_1141 ensembl transcript 152 1280 . - . ID=Physo126461;Parent=Physo126461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1141 . CDS 152 384 . - 0 ID=Physo126461;Parent=Physo126461;rank=2 scaffold_1141 . exon 152 384 . - . ID=Physo126461.2;Parent=Physo126461;constitutive=1;ensembl_phase=1;rank=2 scaffold_1141 . CDS 422 1202 . - 0 ID=Physo126461;Parent=Physo126461;rank=1 scaffold_1141 . exon 422 1280 . - . ID=Physo126461.1;Parent=Physo126461;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1141 ensembl protein_coding_gene 3556 5257 . + . ID=Physo145392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11410001;logic_name=jgi_physo1_1 scaffold_1141 ensembl transcript 3556 5257 . + . ID=Physo145392;Parent=Physo145392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1141 . CDS 3556 4119 . + 0 ID=Physo145392;Parent=Physo145392;rank=1 scaffold_1141 . exon 3556 4119 . + . ID=Physo145392.1;Parent=Physo145392;constitutive=1;rank=1 scaffold_1141 . CDS 4198 4240 . + 0 ID=Physo145392;Parent=Physo145392;rank=2 scaffold_1141 . exon 4198 4240 . + . ID=Physo145392.2;Parent=Physo145392;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1141 . CDS 4322 4575 . + 0 ID=Physo145392;Parent=Physo145392;rank=3 scaffold_1141 . exon 4322 4575 . + . ID=Physo145392.3;Parent=Physo145392;constitutive=1;ensembl_phase=1;rank=3 scaffold_1141 . CDS 4635 4767 . + 0 ID=Physo145392;Parent=Physo145392;rank=4 scaffold_1141 . exon 4635 4767 . + . ID=Physo145392.4;Parent=Physo145392;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1141 . CDS 4842 5257 . + 0 ID=Physo145392;Parent=Physo145392;rank=5 scaffold_1141 . exon 4842 5257 . + . ID=Physo145392.5;Parent=Physo145392;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_1140 1 5266 scaffold_1140 . biological_region 1310 1313 0.999 + . logic_name=eponine scaffold_1140 . repeat_region 1776 2669 . ? . description=dust scaffold_1140 ensembl protein_coding_gene 2770 5243 . + . ID=Physo145391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11400001;logic_name=jgi_physo1_1 scaffold_1140 ensembl transcript 2770 5243 . + . ID=Physo145391;Parent=Physo145391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1140 . CDS 2770 5241 . + 0 ID=Physo145391;Parent=Physo145391;rank=1 scaffold_1140 . exon 2770 5243 . + . ID=Physo145391.1;Parent=Physo145391;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1139 1 5289 scaffold_1139 . repeat_region 1 1038 . ? . description=trf scaffold_1139 . biological_region 86 88 0.999 + . logic_name=eponine scaffold_1139 . repeat_region 216 264 . ? . description=trf scaffold_1139 . biological_region 221 223 0.999 + . logic_name=eponine scaffold_1139 . biological_region 383 386 0.999 + . logic_name=eponine scaffold_1139 . biological_region 518 520 0.999 + . logic_name=eponine scaffold_1139 . biological_region 532 533 0.999 - . logic_name=eponine scaffold_1139 . biological_region 680 683 0.999 + . logic_name=eponine scaffold_1139 . biological_region 815 817 0.999 + . logic_name=eponine scaffold_1139 . biological_region 829 830 0.999 - . logic_name=eponine scaffold_1139 . biological_region 1306 1308 0.999 + . logic_name=eponine scaffold_1139 . biological_region 1308 1312 0.999 - . logic_name=eponine scaffold_1139 . biological_region 1329 1334 0.999 - . logic_name=eponine scaffold_1139 . biological_region 1363 1365 0.999 + . logic_name=eponine scaffold_1139 . biological_region 1446 1450 0.999 - . logic_name=eponine scaffold_1139 . repeat_region 1593 1630 . ? . description=trf scaffold_1139 . biological_region 1907 1912 0.999 + . logic_name=eponine scaffold_1139 . biological_region 1934 1936 0.999 + . logic_name=eponine scaffold_1139 . repeat_region 3027 3041 . ? . description=dust scaffold_1139 . biological_region 3214 3217 0.999 + . logic_name=eponine scaffold_1139 . biological_region 3249 3260 0.999 - . logic_name=eponine scaffold_1139 . biological_region 3363 3372 0.999 + . logic_name=eponine scaffold_1139 . biological_region 3599 3600 0.999 - . logic_name=eponine scaffold_1139 . repeat_region 4667 5289 . ? . description=trf scaffold_1139 . biological_region 4764 4766 0.999 - . logic_name=eponine scaffold_1139 . biological_region 4821 4824 0.999 + . logic_name=eponine scaffold_1139 . biological_region 4838 4843 0.999 + . logic_name=eponine scaffold_1139 . biological_region 4972 4974 0.999 - . logic_name=eponine scaffold_1139 . biological_region 5050 5055 0.999 - . logic_name=eponine scaffold_1139 . biological_region 5109 5112 0.999 + . logic_name=eponine scaffold_1139 . biological_region 5126 5131 0.999 + . logic_name=eponine scaffold_1139 ensembl protein_coding_gene 36 1799 . - . ID=Physo145389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11390001;logic_name=jgi_physo1_1 scaffold_1139 ensembl transcript 36 1799 . - . ID=Physo145389;Parent=Physo145389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1139 . CDS 36 1579 . - 0 ID=Physo145389;Parent=Physo145389;rank=2 scaffold_1139 . exon 36 1579 . - . ID=Physo145389.2;Parent=Physo145389;constitutive=1;ensembl_phase=1;rank=2 scaffold_1139 . CDS 1622 1799 . - 0 ID=Physo145389;Parent=Physo145389;rank=1 scaffold_1139 . exon 1622 1799 . - . ID=Physo145389.1;Parent=Physo145389;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1139 ensembl protein_coding_gene 3145 5283 . + . ID=Physo145390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11390002;logic_name=jgi_physo1_1 scaffold_1139 ensembl transcript 3145 5283 . + . ID=Physo145390;Parent=Physo145390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1139 . CDS 3145 5283 . + 0 ID=Physo145390;Parent=Physo145390;rank=1 scaffold_1139 . exon 3145 5283 . + . ID=Physo145390.1;Parent=Physo145390;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1138 1 5309 scaffold_1138 . repeat_region 21 50 . ? . description=dust scaffold_1138 . repeat_region 21 50 . ? . description=trf scaffold_1138 . repeat_region 804 938 . ? . description=trf scaffold_1138 . repeat_region 3866 3876 . ? . description=dust scaffold_1138 . repeat_region 3870 3916 . + . description=GypsyPi-1c_I-int scaffold_1138 . biological_region 4442 4445 0.999 + . logic_name=eponine scaffold_1138 . biological_region 4463 4466 0.999 + . logic_name=eponine scaffold_1138 . biological_region 4778 4780 0.999 + . logic_name=eponine scaffold_1138 . biological_region 4825 4827 0.999 - . logic_name=eponine scaffold_1138 . biological_region 4842 4846 0.999 - . logic_name=eponine scaffold_1138 . biological_region 5032 5033 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1148 1 5338 scaffold_1148 . repeat_region 1303 3212 . ? . description=dust scaffold_1148 . repeat_region 3223 3260 . ? . description=trf scaffold_1148 . biological_region 5216 5218 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1133 1 5383 scaffold_1133 . biological_region 1417 1419 0.999 - . logic_name=eponine scaffold_1133 . repeat_region 1481 1513 . ? . description=trf scaffold_1133 . biological_region 2303 2307 0.999 + . logic_name=eponine scaffold_1133 . biological_region 2325 2330 0.999 + . logic_name=eponine scaffold_1133 . biological_region 2435 2437 0.999 - . logic_name=eponine scaffold_1133 . biological_region 3291 3293 0.999 + . logic_name=eponine scaffold_1133 . biological_region 4575 4577 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1137 1 5402 scaffold_1137 . repeat_region 1933 2314 . ? . description=dust scaffold_1137 . repeat_region 4024 4073 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1136 1 5412 scaffold_1136 . biological_region 735 739 0.999 + . logic_name=eponine scaffold_1136 . repeat_region 1195 2174 . ? . description=dust scaffold_1136 . repeat_region 2878 2928 . ? . description=trf scaffold_1136 . repeat_region 2878 2930 . ? . description=trf scaffold_1136 . repeat_region 2970 3000 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1135 1 5421 scaffold_1135 . repeat_region 6 215 . ? . description=trf scaffold_1135 . repeat_region 1178 1227 . ? . description=dust scaffold_1135 . biological_region 1534 1534 0.999 + . logic_name=eponine scaffold_1135 . biological_region 2524 2528 0.999 - . logic_name=eponine scaffold_1135 . biological_region 2901 2905 0.999 + . logic_name=eponine scaffold_1135 . repeat_region 3682 4420 . ? . description=dust scaffold_1135 ensembl protein_coding_gene 2311 3424 . - . ID=Physo145388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11350001;logic_name=jgi_physo1_1 scaffold_1135 ensembl transcript 2311 3424 . - . ID=Physo145388;Parent=Physo145388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1135 . CDS 2311 2375 . - 0 ID=Physo145388;Parent=Physo145388;rank=2 scaffold_1135 . exon 2311 2375 . - . ID=Physo145388.2;Parent=Physo145388;constitutive=1;ensembl_phase=1;rank=2 scaffold_1135 . CDS 2446 3424 . - 0 ID=Physo145388;Parent=Physo145388;rank=1 scaffold_1135 . exon 2446 3424 . - . ID=Physo145388.1;Parent=Physo145388;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1134 1 5445 scaffold_1134 . repeat_region 898 962 . ? . description=dust scaffold_1134 . repeat_region 2468 2852 . ? . description=dust scaffold_1134 . repeat_region 5239 5440 . + . description=Sola3-3_PS ##gff-version 3 ##sequence-region scaffold_1131 1 5449 scaffold_1131 . repeat_region 704 2861 . ? . description=dust scaffold_1131 . repeat_region 3940 3983 . ? . description=trf scaffold_1131 . repeat_region 4245 4352 . ? . description=trf scaffold_1131 ensembl protein_coding_gene 3064 3534 . - . ID=Physo145383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11310001;logic_name=jgi_physo1_1 scaffold_1131 ensembl transcript 3064 3534 . - . ID=Physo145383;Parent=Physo145383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1131 . CDS 3064 3534 . - 0 ID=Physo145383;Parent=Physo145383;rank=1 scaffold_1131 . exon 3064 3534 . - . ID=Physo145383.1;Parent=Physo145383;constitutive=1;rank=1 scaffold_1131 ensembl protein_coding_gene 4618 5103 . + . ID=Physo145384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11310002;logic_name=jgi_physo1_1 scaffold_1131 ensembl transcript 4618 5103 . + . ID=Physo145384;Parent=Physo145384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1131 . exon 4618 5103 . + . ID=Physo145384.1;Parent=Physo145384;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1131 . CDS 4711 5103 . + 0 ID=Physo145384;Parent=Physo145384;rank=1 ##gff-version 3 ##sequence-region scaffold_1129 1 5484 scaffold_1129 . repeat_region 3569 4254 . ? . description=dust scaffold_1129 . biological_region 5126 5128 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1132 1 5526 scaffold_1132 . repeat_region 1740 1815 . + . description=(CAG)n scaffold_1132 . repeat_region 1764 1815 . ? . description=dust scaffold_1132 . repeat_region 1766 1797 . ? . description=trf scaffold_1132 . repeat_region 2163 2212 . ? . description=dust scaffold_1132 . biological_region 2329 2331 0.999 + . logic_name=eponine scaffold_1132 . biological_region 2330 2333 0.999 - . logic_name=eponine scaffold_1132 . repeat_region 3471 3520 . ? . description=dust scaffold_1132 . biological_region 5328 5330 0.999 + . logic_name=eponine scaffold_1132 ensembl protein_coding_gene 5285 5518 . - . ID=Physo126448;biotype=protein_coding;external_name=estExt_Genewise1.C_11320005;logic_name=jgi_physo1_1 scaffold_1132 ensembl transcript 5285 5518 . - . ID=Physo126448;Parent=Physo126448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1132 . exon 5285 5518 . - . ID=Physo126448.1;Parent=Physo126448;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1132 . CDS 5286 5516 . - 0 ID=Physo126448;Parent=Physo126448;rank=1 scaffold_1132 ensembl protein_coding_gene 43 984 . + . ID=Physo145385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11320001;logic_name=jgi_physo1_1 scaffold_1132 ensembl transcript 43 984 . + . ID=Physo145385;Parent=Physo145385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1132 . exon 43 984 . + . ID=Physo145385.1;Parent=Physo145385;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1132 . CDS 79 984 . + 0 ID=Physo145385;Parent=Physo145385;rank=1 scaffold_1132 ensembl protein_coding_gene 1069 1962 . - . ID=Physo145386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11320002;logic_name=jgi_physo1_1 scaffold_1132 ensembl transcript 1069 1962 . - . ID=Physo145386;Parent=Physo145386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1132 . CDS 1069 1962 . - 0 ID=Physo145386;Parent=Physo145386;rank=1 scaffold_1132 . exon 1069 1962 . - . ID=Physo145386.1;Parent=Physo145386;constitutive=1;rank=1 scaffold_1132 ensembl protein_coding_gene 2248 4855 . + . ID=Physo145387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11320003;logic_name=jgi_physo1_1 scaffold_1132 ensembl transcript 2248 4855 . + . ID=Physo145387;Parent=Physo145387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1132 . CDS 2248 2655 . + 0 ID=Physo145387;Parent=Physo145387;rank=1 scaffold_1132 . exon 2248 2655 . + . ID=Physo145387.1;Parent=Physo145387;constitutive=1;rank=1 scaffold_1132 . CDS 2728 2973 . + 0 ID=Physo145387;Parent=Physo145387;rank=2 scaffold_1132 . exon 2728 2973 . + . ID=Physo145387.2;Parent=Physo145387;constitutive=1;rank=2 scaffold_1132 . CDS 3559 3864 . + 0 ID=Physo145387;Parent=Physo145387;rank=3 scaffold_1132 . exon 3559 3864 . + . ID=Physo145387.3;Parent=Physo145387;constitutive=1;rank=3 scaffold_1132 . CDS 3929 4855 . + 0 ID=Physo145387;Parent=Physo145387;rank=4 scaffold_1132 . exon 3929 4855 . + . ID=Physo145387.4;Parent=Physo145387;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_1130 1 5528 scaffold_1130 . biological_region 2922 2926 0.999 - . logic_name=eponine scaffold_1130 . repeat_region 3391 3448 . ? . description=dust scaffold_1130 . repeat_region 4250 4257 . ? . description=dust scaffold_1130 ensembl protein_coding_gene 926 2293 . - . ID=Physo145382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11300001;logic_name=jgi_physo1_1 scaffold_1130 ensembl transcript 926 2293 . - . ID=Physo145382;Parent=Physo145382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1130 . CDS 926 2260 . - 0 ID=Physo145382;Parent=Physo145382;rank=1 scaffold_1130 . exon 926 2293 . - . ID=Physo145382.1;Parent=Physo145382;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1128 1 5570 scaffold_1128 . biological_region 209 211 0.999 + . logic_name=eponine scaffold_1128 . biological_region 305 308 0.999 - . logic_name=eponine scaffold_1128 . repeat_region 1274 1347 . ? . description=trf scaffold_1128 . repeat_region 1772 2924 . ? . description=dust scaffold_1128 . repeat_region 3004 3011 . ? . description=dust scaffold_1128 . biological_region 3057 3061 0.999 + . logic_name=eponine scaffold_1128 . biological_region 4005 4007 0.999 - . logic_name=eponine scaffold_1128 . biological_region 4266 4267 0.999 - . logic_name=eponine scaffold_1128 ensembl protein_coding_gene 910 1503 . + . ID=Physo145380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11280001;logic_name=jgi_physo1_1 scaffold_1128 ensembl transcript 910 1503 . + . ID=Physo145380;Parent=Physo145380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1128 . exon 910 1503 . + . ID=Physo145380.1;Parent=Physo145380;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1128 . CDS 973 1458 . + 0 ID=Physo145380;Parent=Physo145380;rank=1 scaffold_1128 ensembl protein_coding_gene 3837 5386 . + . ID=Physo145381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11280002;logic_name=jgi_physo1_1 scaffold_1128 ensembl transcript 3837 5386 . + . ID=Physo145381;Parent=Physo145381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1128 . CDS 3837 5384 . + 0 ID=Physo145381;Parent=Physo145381;rank=1 scaffold_1128 . exon 3837 5386 . + . ID=Physo145381.1;Parent=Physo145381;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1127 1 5577 scaffold_1127 . repeat_region 1437 1444 . ? . description=dust scaffold_1127 . repeat_region 2059 2241 . - . description=GypsyPi-1c_LTR scaffold_1127 . repeat_region 2363 2674 . - . description=GypsyPi-1c_I-int scaffold_1127 . biological_region 2616 2619 0.999 + . logic_name=eponine scaffold_1127 . biological_region 2812 2817 0.999 + . logic_name=eponine scaffold_1127 . repeat_region 3254 3630 . - . description=GypsyPi-1c_I-int scaffold_1127 . repeat_region 3360 3386 . ? . description=trf scaffold_1127 . repeat_region 3632 4425 . ? . description=dust scaffold_1127 . repeat_region 4426 5576 . - . description=GypsyPi-1c_I-int scaffold_1127 . biological_region 4930 4937 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1124 1 5631 scaffold_1124 . repeat_region 1097 3406 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1123 1 5647 scaffold_1123 . repeat_region 428 610 . + . description=GypsyPi-1c_LTR scaffold_1123 . repeat_region 611 2421 . + . description=GypsyPi-1c_I-int scaffold_1123 . biological_region 854 856 0.999 + . logic_name=eponine scaffold_1123 . biological_region 1111 1115 0.999 + . logic_name=eponine scaffold_1123 . biological_region 1130 1133 0.999 - . logic_name=eponine scaffold_1123 . repeat_region 2450 2535 . ? . description=dust scaffold_1123 . repeat_region 2678 5647 . + . description=GypsyPi-1c_I-int scaffold_1123 . biological_region 5183 5187 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1122 1 5682 scaffold_1122 . biological_region 215 219 0.999 + . logic_name=eponine scaffold_1122 . repeat_region 574 608 . ? . description=trf scaffold_1122 ensembl protein_coding_gene 5 646 . - . ID=Physo145377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11220001;logic_name=jgi_physo1_1 scaffold_1122 ensembl transcript 5 646 . - . ID=Physo145377;Parent=Physo145377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1122 . CDS 5 646 . - 0 ID=Physo145377;Parent=Physo145377;rank=1 scaffold_1122 . exon 5 646 . - . ID=Physo145377.1;Parent=Physo145377;constitutive=1;rank=1 scaffold_1122 ensembl protein_coding_gene 2617 5539 . - . ID=Physo145378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11220002;logic_name=jgi_physo1_1 scaffold_1122 ensembl transcript 2617 5539 . - . ID=Physo145378;Parent=Physo145378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1122 . CDS 2617 2882 . - 0 ID=Physo145378;Parent=Physo145378;rank=2 scaffold_1122 . exon 2617 2882 . - . ID=Physo145378.2;Parent=Physo145378;constitutive=1;ensembl_phase=1;rank=2 scaffold_1122 . CDS 2929 5539 . - 0 ID=Physo145378;Parent=Physo145378;rank=1 scaffold_1122 . exon 2929 5539 . - . ID=Physo145378.1;Parent=Physo145378;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1121 1 5725 scaffold_1121 ensembl protein_coding_gene 39 791 . + . ID=Physo145376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11210001;logic_name=jgi_physo1_1 scaffold_1121 ensembl transcript 39 791 . + . ID=Physo145376;Parent=Physo145376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1121 . exon 39 791 . + . ID=Physo145376.1;Parent=Physo145376;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1121 . CDS 171 623 . + 0 ID=Physo145376;Parent=Physo145376;rank=1 ##gff-version 3 ##sequence-region scaffold_1126 1 5740 scaffold_1126 . biological_region 1130 1133 0.999 + . logic_name=eponine scaffold_1126 . biological_region 1319 1320 0.999 - . logic_name=eponine scaffold_1126 . biological_region 1746 1750 0.999 - . logic_name=eponine scaffold_1126 . biological_region 1767 1771 0.999 - . logic_name=eponine scaffold_1126 . biological_region 2125 2127 0.999 + . logic_name=eponine scaffold_1126 . repeat_region 2274 3231 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1120 1 5754 scaffold_1120 . repeat_region 915 1629 . ? . description=dust scaffold_1120 . repeat_region 2778 4087 . + . description=Gypsy-1-I_PI-int scaffold_1120 . repeat_region 4115 4889 . ? . description=dust scaffold_1120 . repeat_region 5006 5421 . + . description=Gypsy-1-I_PI-int ##gff-version 3 ##sequence-region scaffold_1119 1 5768 scaffold_1119 . repeat_region 2019 3309 . ? . description=dust scaffold_1119 . biological_region 3561 3563 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1118 1 5777 scaffold_1118 . repeat_region 1407 3161 . ? . description=dust scaffold_1118 ensembl protein_coding_gene 3239 3658 . - . ID=Physo126434;biotype=protein_coding;external_name=estExt_Genewise1.C_11180001;logic_name=jgi_physo1_1 scaffold_1118 ensembl transcript 3239 3658 . - . ID=Physo126434;Parent=Physo126434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1118 . CDS 3239 3640 . - 0 ID=Physo126434;Parent=Physo126434;rank=1 scaffold_1118 . exon 3239 3658 . - . ID=Physo126434.1;Parent=Physo126434;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1118 ensembl protein_coding_gene 1 777 . + . ID=Physo145374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11180001;logic_name=jgi_physo1_1 scaffold_1118 ensembl transcript 1 777 . + . ID=Physo145374;Parent=Physo145374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1118 . exon 1 115 . + . ID=Physo145374.1;Parent=Physo145374;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1118 . CDS 95 115 . + 0 ID=Physo145374;Parent=Physo145374;rank=1 scaffold_1118 . CDS 190 546 . + 0 ID=Physo145374;Parent=Physo145374;rank=2 scaffold_1118 . exon 190 777 . + . ID=Physo145374.2;Parent=Physo145374;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1118 ensembl protein_coding_gene 3999 4841 . - . ID=Physo145375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11180002;logic_name=jgi_physo1_1 scaffold_1118 ensembl transcript 3999 4841 . - . ID=Physo145375;Parent=Physo145375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1118 . CDS 3999 4841 . - 0 ID=Physo145375;Parent=Physo145375;rank=1 scaffold_1118 . exon 3999 4841 . - . ID=Physo145375.1;Parent=Physo145375;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1116 1 5805 scaffold_1116 . biological_region 284 286 0.999 - . logic_name=eponine scaffold_1116 . repeat_region 884 4405 . ? . description=dust scaffold_1116 . repeat_region 5692 5702 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1117 1 5807 scaffold_1117 . biological_region 1979 1981 0.999 - . logic_name=eponine scaffold_1117 . repeat_region 5294 5319 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1115 1 5809 scaffold_1115 . repeat_region 1163 2809 . ? . description=dust scaffold_1115 . biological_region 2946 2951 0.999 + . logic_name=eponine scaffold_1115 . biological_region 3014 3015 0.999 + . logic_name=eponine scaffold_1115 . biological_region 3293 3294 0.999 + . logic_name=eponine scaffold_1115 . biological_region 3420 3425 0.999 + . logic_name=eponine scaffold_1115 . biological_region 3436 3443 0.999 - . logic_name=eponine scaffold_1115 . biological_region 3452 3453 0.999 + . logic_name=eponine scaffold_1115 . biological_region 3489 3500 0.999 + . logic_name=eponine scaffold_1115 . biological_region 3614 3614 0.999 - . logic_name=eponine scaffold_1115 . biological_region 3632 3637 0.999 + . logic_name=eponine scaffold_1115 . biological_region 3640 3642 0.999 - . logic_name=eponine scaffold_1115 . biological_region 3666 3670 0.999 - . logic_name=eponine scaffold_1115 . biological_region 4077 4078 0.999 - . logic_name=eponine scaffold_1115 . biological_region 4129 4133 0.999 + . logic_name=eponine scaffold_1115 . biological_region 4289 4289 0.999 - . logic_name=eponine scaffold_1115 . biological_region 4920 4924 0.999 + . logic_name=eponine scaffold_1115 . biological_region 4920 4928 0.999 - . logic_name=eponine scaffold_1115 . biological_region 4947 4955 0.999 + . logic_name=eponine scaffold_1115 . biological_region 4976 4984 0.999 + . logic_name=eponine scaffold_1115 ensembl protein_coding_gene 3608 4378 . + . ID=Physo145373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11150001;logic_name=jgi_physo1_1 scaffold_1115 ensembl transcript 3608 4378 . + . ID=Physo145373;Parent=Physo145373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1115 . CDS 3608 4378 . + 0 ID=Physo145373;Parent=Physo145373;rank=1 scaffold_1115 . exon 3608 4378 . + . ID=Physo145373.1;Parent=Physo145373;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1125 1 5845 scaffold_1125 . repeat_region 781 1533 . + . description=Polinton-1_PI scaffold_1125 . repeat_region 1534 3143 . ? . description=dust scaffold_1125 ensembl protein_coding_gene 4022 5530 . + . ID=Physo109738;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_11250001;logic_name=jgi_physo1_1 scaffold_1125 ensembl transcript 4022 5530 . + . ID=Physo109738;Parent=Physo109738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1125 . CDS 4022 5530 . + 0 ID=Physo109738;Parent=Physo109738;rank=1 scaffold_1125 . exon 4022 5530 . + . ID=Physo109738.1;Parent=Physo109738;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1113 1 5873 scaffold_1113 . repeat_region 1483 1539 . ? . description=trf scaffold_1113 . repeat_region 1519 1665 . ? . description=trf scaffold_1113 . biological_region 1536 1539 0.999 + . logic_name=eponine scaffold_1113 . repeat_region 1537 1584 . ? . description=trf scaffold_1113 . repeat_region 1568 1704 . ? . description=trf scaffold_1113 . repeat_region 3261 3268 . ? . description=dust scaffold_1113 ensembl protein_coding_gene 1526 1882 . - . ID=Physo126430;biotype=protein_coding;external_name=estExt_Genewise1.C_11130001;logic_name=jgi_physo1_1 scaffold_1113 ensembl transcript 1526 1882 . - . ID=Physo126430;Parent=Physo126430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1113 . CDS 1526 1669 . - 0 ID=Physo126430;Parent=Physo126430;rank=2 scaffold_1113 . exon 1526 1669 . - . ID=Physo126430.2;Parent=Physo126430;constitutive=1;rank=2 scaffold_1113 . CDS 1694 1882 . - 0 ID=Physo126430;Parent=Physo126430;rank=1 scaffold_1113 . exon 1694 1882 . - . ID=Physo126430.1;Parent=Physo126430;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1111 1 5877 scaffold_1111 . repeat_region 1162 1203 . ? . description=trf scaffold_1111 . biological_region 4322 4324 0.999 + . logic_name=eponine scaffold_1111 . biological_region 5710 5712 0.999 + . logic_name=eponine scaffold_1111 ensembl protein_coding_gene 1698 5875 . - . ID=Physo145369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11110001;logic_name=jgi_physo1_1 scaffold_1111 ensembl transcript 1698 5875 . - . ID=Physo145369;Parent=Physo145369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1111 . exon 1698 5875 . - . ID=Physo145369.1;Parent=Physo145369;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1111 . CDS 1823 5755 . - 0 ID=Physo145369;Parent=Physo145369;rank=1 ##gff-version 3 ##sequence-region scaffold_1114 1 5880 scaffold_1114 . repeat_region 17 405 . + . description=GypsyPi-1c_I-int scaffold_1114 . repeat_region 484 581 . ? . description=trf scaffold_1114 . biological_region 1039 1043 0.999 - . logic_name=eponine scaffold_1114 . biological_region 1564 1568 0.999 - . logic_name=eponine scaffold_1114 . biological_region 2122 2126 0.999 + . logic_name=eponine scaffold_1114 . repeat_region 2302 2351 . ? . description=dust scaffold_1114 . repeat_region 2561 2985 . ? . description=trf scaffold_1114 . repeat_region 2563 2985 . ? . description=trf scaffold_1114 . repeat_region 3219 4370 . ? . description=dust scaffold_1114 ensembl protein_coding_gene 17 283 . + . ID=Physo126432;biotype=protein_coding;external_name=estExt_Genewise1.C_11140002;logic_name=jgi_physo1_1 scaffold_1114 ensembl transcript 17 283 . + . ID=Physo126432;Parent=Physo126432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1114 . exon 17 283 . + . ID=Physo126432.1;Parent=Physo126432;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1114 . CDS 47 283 . + 0 ID=Physo126432;Parent=Physo126432;rank=1 scaffold_1114 ensembl protein_coding_gene 965 1753 . - . ID=Physo145372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11140002;logic_name=jgi_physo1_1 scaffold_1114 ensembl transcript 965 1753 . - . ID=Physo145372;Parent=Physo145372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1114 . CDS 965 1753 . - 0 ID=Physo145372;Parent=Physo145372;rank=1 scaffold_1114 . exon 965 1753 . - . ID=Physo145372.1;Parent=Physo145372;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1110 1 5891 scaffold_1110 . biological_region 2853 2855 0.999 + . logic_name=eponine scaffold_1110 . repeat_region 3642 4217 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1109 1 5895 scaffold_1109 . repeat_region 937 3398 . ? . description=dust scaffold_1109 . biological_region 5260 5263 0.999 + . logic_name=eponine scaffold_1109 ensembl pseudogene 3576 4612 . + . ID=Physo109735;biotype=pseudogene;external_name=estExt_fgenesh1_pm.C_11090001;logic_name=jgi_physo1_1 scaffold_1109 ensembl pseudogene 3576 4612 . + . ID=Physo109735;Parent=Physo109735;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_1109 . exon 3576 3601 . + . ID=Physo109735.1;Parent=Physo109735;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1109 . exon 3673 4612 . + . ID=Physo109735.2;Parent=Physo109735;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1109 ensembl protein_coding_gene 4790 5761 . + . ID=Physo109736;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_11090002;logic_name=jgi_physo1_1 scaffold_1109 ensembl transcript 4790 5761 . + . ID=Physo109736;Parent=Physo109736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1109 . exon 4790 5761 . + . ID=Physo109736.1;Parent=Physo109736;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1109 . CDS 4830 5624 . + 0 ID=Physo109736;Parent=Physo109736;rank=1 ##gff-version 3 ##sequence-region scaffold_1107 1 5908 scaffold_1107 . repeat_region 1103 1110 . ? . description=dust scaffold_1107 . biological_region 1399 1400 0.999 + . logic_name=eponine scaffold_1107 . biological_region 1416 1418 0.999 + . logic_name=eponine scaffold_1107 . biological_region 1457 1457 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1108 1 5908 scaffold_1108 . biological_region 1078 1079 0.999 - . logic_name=eponine scaffold_1108 . biological_region 2816 2820 0.999 - . logic_name=eponine scaffold_1108 . biological_region 3457 3458 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1106 1 5940 scaffold_1106 . repeat_region 1490 2367 . ? . description=dust scaffold_1106 . repeat_region 4094 5011 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1105 1 5962 scaffold_1105 . repeat_region 1787 1795 . ? . description=dust scaffold_1105 . repeat_region 4528 4578 . ? . description=trf scaffold_1105 . repeat_region 4528 4580 . ? . description=trf scaffold_1105 . repeat_region 4620 4650 . ? . description=trf scaffold_1105 . repeat_region 4655 4692 . ? . description=trf scaffold_1105 . biological_region 5776 5777 0.999 + . logic_name=eponine scaffold_1105 ensembl protein_coding_gene 2083 3033 . - . ID=Physo145366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11050001;logic_name=jgi_physo1_1 scaffold_1105 ensembl transcript 2083 3033 . - . ID=Physo145366;Parent=Physo145366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1105 . CDS 2083 3033 . - 0 ID=Physo145366;Parent=Physo145366;rank=1 scaffold_1105 . exon 2083 3033 . - . ID=Physo145366.1;Parent=Physo145366;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1104 1 6000 scaffold_1104 . repeat_region 354 472 . + . description=(TATCG)n scaffold_1104 . repeat_region 354 483 . ? . description=trf scaffold_1104 . repeat_region 360 483 . ? . description=trf scaffold_1104 . biological_region 1121 1124 0.999 - . logic_name=eponine scaffold_1104 . biological_region 5275 5279 0.999 + . logic_name=eponine scaffold_1104 . biological_region 5282 5286 0.999 + . logic_name=eponine scaffold_1104 . repeat_region 5885 5989 . ? . description=trf scaffold_1104 . repeat_region 5891 5990 . ? . description=trf scaffold_1104 ensembl protein_coding_gene 1656 4059 . - . ID=Physo145365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11040001;logic_name=jgi_physo1_1 scaffold_1104 ensembl transcript 1656 4059 . - . ID=Physo145365;Parent=Physo145365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1104 . CDS 1656 2845 . - 0 ID=Physo145365;Parent=Physo145365;rank=2 scaffold_1104 . exon 1656 2845 . - . ID=Physo145365.2;Parent=Physo145365;constitutive=1;ensembl_phase=1;rank=2 scaffold_1104 . CDS 3177 4059 . - 0 ID=Physo145365;Parent=Physo145365;rank=1 scaffold_1104 . exon 3177 4059 . - . ID=Physo145365.1;Parent=Physo145365;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1102 1 6009 scaffold_1102 . repeat_region 972 1997 . ? . description=dust scaffold_1102 . biological_region 2710 2712 0.999 + . logic_name=eponine scaffold_1102 . repeat_region 3655 4637 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1103 1 6025 scaffold_1103 . repeat_region 1577 1712 . ? . description=dust scaffold_1103 . repeat_region 2524 2594 . ? . description=trf scaffold_1103 . repeat_region 2912 2919 . ? . description=dust scaffold_1103 . repeat_region 3450 4490 . ? . description=dust scaffold_1103 ensembl protein_coding_gene 1234 1560 . - . ID=Physo126421;biotype=protein_coding;external_name=estExt_Genewise1.C_11030005;logic_name=jgi_physo1_1 scaffold_1103 ensembl transcript 1234 1560 . - . ID=Physo126421;Parent=Physo126421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1103 . CDS 1234 1455 . - 0 ID=Physo126421;Parent=Physo126421;rank=1 scaffold_1103 . exon 1234 1560 . - . ID=Physo126421.1;Parent=Physo126421;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1103 ensembl protein_coding_gene 7 831 . - . ID=Physo145363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11030001;logic_name=jgi_physo1_1 scaffold_1103 ensembl transcript 7 831 . - . ID=Physo145363;Parent=Physo145363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1103 . CDS 7 831 . - 0 ID=Physo145363;Parent=Physo145363;rank=1 scaffold_1103 . exon 7 831 . - . ID=Physo145363.1;Parent=Physo145363;constitutive=1;rank=1 scaffold_1103 ensembl protein_coding_gene 4547 6010 . + . ID=Physo145364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11030002;logic_name=jgi_physo1_1 scaffold_1103 ensembl transcript 4547 6010 . + . ID=Physo145364;Parent=Physo145364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1103 . CDS 4547 6010 . + 0 ID=Physo145364;Parent=Physo145364;rank=1 scaffold_1103 . exon 4547 6010 . + . ID=Physo145364.1;Parent=Physo145364;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1101 1 6048 scaffold_1101 . repeat_region 1184 1890 . ? . description=dust scaffold_1101 . biological_region 2189 2191 0.999 - . logic_name=eponine scaffold_1101 . repeat_region 2661 2696 . ? . description=trf scaffold_1101 . repeat_region 2711 2774 . ? . description=trf scaffold_1101 . repeat_region 2711 2776 . ? . description=trf scaffold_1101 . repeat_region 2721 2774 . ? . description=dust scaffold_1101 . repeat_region 3031 3108 . ? . description=dust scaffold_1101 . repeat_region 3031 3108 . ? . description=trf scaffold_1101 . repeat_region 3031 3108 . + . description=(TCTG)n scaffold_1101 . biological_region 3621 3623 0.999 - . logic_name=eponine scaffold_1101 . repeat_region 4093 4128 . ? . description=trf scaffold_1101 . repeat_region 4129 4191 . ? . description=dust scaffold_1101 . repeat_region 4143 4206 . ? . description=trf scaffold_1101 . repeat_region 4143 4208 . ? . description=trf scaffold_1101 . repeat_region 4463 4488 . ? . description=dust scaffold_1101 . repeat_region 4463 4488 . ? . description=trf scaffold_1101 ensembl protein_coding_gene 2505 2882 . + . ID=Physo145360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11010001;logic_name=jgi_physo1_1 scaffold_1101 ensembl transcript 2505 2882 . + . ID=Physo145360;Parent=Physo145360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1101 . CDS 2505 2882 . + 0 ID=Physo145360;Parent=Physo145360;rank=1 scaffold_1101 . exon 2505 2882 . + . ID=Physo145360.1;Parent=Physo145360;constitutive=1;rank=1 scaffold_1101 ensembl protein_coding_gene 3937 4314 . + . ID=Physo145361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11010002;logic_name=jgi_physo1_1 scaffold_1101 ensembl transcript 3937 4314 . + . ID=Physo145361;Parent=Physo145361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1101 . CDS 3937 4314 . + 0 ID=Physo145361;Parent=Physo145361;rank=1 scaffold_1101 . exon 3937 4314 . + . ID=Physo145361.1;Parent=Physo145361;constitutive=1;rank=1 scaffold_1101 ensembl protein_coding_gene 4814 5935 . - . ID=Physo145362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11010003;logic_name=jgi_physo1_1 scaffold_1101 ensembl transcript 4814 5935 . - . ID=Physo145362;Parent=Physo145362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1101 . exon 4814 5009 . - . ID=Physo145362.3;Parent=Physo145362;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1101 . CDS 4971 5009 . - 0 ID=Physo145362;Parent=Physo145362;rank=3 scaffold_1101 . CDS 5100 5171 . - 0 ID=Physo145362;Parent=Physo145362;rank=2 scaffold_1101 . exon 5100 5171 . - . ID=Physo145362.2;Parent=Physo145362;constitutive=1;rank=2 scaffold_1101 . CDS 5239 5868 . - 0 ID=Physo145362;Parent=Physo145362;rank=1 scaffold_1101 . exon 5239 5935 . - . ID=Physo145362.1;Parent=Physo145362;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1099 1 6051 scaffold_1099 . repeat_region 1624 2348 . ? . description=dust scaffold_1099 . biological_region 2883 2887 0.999 - . logic_name=eponine scaffold_1099 . biological_region 2936 2941 0.999 - . logic_name=eponine scaffold_1099 . biological_region 2993 2999 0.999 + . logic_name=eponine scaffold_1099 . biological_region 3042 3047 0.999 + . logic_name=eponine scaffold_1099 . repeat_region 3345 4063 . - . description=GypsyPi-1c_I-int scaffold_1099 . biological_region 4093 4096 0.999 + . logic_name=eponine scaffold_1099 . repeat_region 4292 4913 . ? . description=dust scaffold_1099 . repeat_region 4990 5787 . - . description=GypsyPi-1c_I-int scaffold_1099 . biological_region 5788 5789 0.999 - . logic_name=eponine scaffold_1099 . biological_region 5813 5814 0.999 + . logic_name=eponine scaffold_1099 . biological_region 5847 5848 0.999 + . logic_name=eponine scaffold_1099 . biological_region 5896 5899 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1112 1 6061 scaffold_1112 . repeat_region 1009 3207 . ? . description=dust scaffold_1112 . repeat_region 3441 3491 . ? . description=trf scaffold_1112 . repeat_region 3533 3563 . ? . description=trf scaffold_1112 . repeat_region 3568 3605 . ? . description=trf scaffold_1112 . repeat_region 3836 5428 . - . description=Polinton-1_PI scaffold_1112 . repeat_region 5537 5572 . ? . description=trf scaffold_1112 . repeat_region 5577 5607 . ? . description=trf scaffold_1112 . repeat_region 5647 5699 . ? . description=trf scaffold_1112 . repeat_region 5647 5699 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1097 1 6065 scaffold_1097 . biological_region 736 742 0.999 + . logic_name=eponine scaffold_1097 . repeat_region 1374 1469 . ? . description=trf scaffold_1097 . biological_region 2620 2625 0.999 + . logic_name=eponine scaffold_1097 . biological_region 2642 2642 0.999 + . logic_name=eponine scaffold_1097 . biological_region 2660 2665 0.999 - . logic_name=eponine scaffold_1097 . biological_region 2696 2701 0.999 - . logic_name=eponine scaffold_1097 . repeat_region 2698 2734 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1096 1 6074 scaffold_1096 . repeat_region 41 74 . ? . description=dust scaffold_1096 . repeat_region 41 74 . ? . description=trf scaffold_1096 . repeat_region 1912 2076 . ? . description=trf scaffold_1096 . repeat_region 2577 4638 . ? . description=dust scaffold_1096 ensembl protein_coding_gene 2194 2376 . + . ID=Physo126388;biotype=protein_coding;external_name=estExt_Genewise1.C_10960001;logic_name=jgi_physo1_1 scaffold_1096 ensembl transcript 2194 2376 . + . ID=Physo126388;Parent=Physo126388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1096 . CDS 2194 2376 . + 0 ID=Physo126388;Parent=Physo126388;rank=1 scaffold_1096 . exon 2194 2376 . + . ID=Physo126388.1;Parent=Physo126388;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1100 1 6105 scaffold_1100 . repeat_region 3163 3170 . ? . description=dust scaffold_1100 . biological_region 3311 3312 0.999 + . logic_name=eponine scaffold_1100 . biological_region 3360 3364 0.999 - . logic_name=eponine scaffold_1100 . repeat_region 3563 3606 . ? . description=trf scaffold_1100 . biological_region 3581 3582 0.999 + . logic_name=eponine scaffold_1100 . biological_region 3960 3962 0.999 + . logic_name=eponine scaffold_1100 . biological_region 3991 3995 0.999 + . logic_name=eponine scaffold_1100 ensembl protein_coding_gene 718 2013 . + . ID=Physo126407;biotype=protein_coding;external_name=estExt_Genewise1.C_11000015;logic_name=jgi_physo1_1 scaffold_1100 ensembl transcript 718 2013 . + . ID=Physo126407;Parent=Physo126407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1100 . exon 718 906 . + . ID=Physo126407.1;Parent=Physo126407;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1100 . CDS 730 906 . + 0 ID=Physo126407;Parent=Physo126407;rank=1 scaffold_1100 . CDS 982 1039 . + 0 ID=Physo126407;Parent=Physo126407;rank=2 scaffold_1100 . exon 982 1039 . + . ID=Physo126407.2;Parent=Physo126407;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1100 . CDS 1109 1304 . + 0 ID=Physo126407;Parent=Physo126407;rank=3 scaffold_1100 . exon 1109 1304 . + . ID=Physo126407.3;Parent=Physo126407;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1100 . CDS 1380 2013 . + 0 ID=Physo126407;Parent=Physo126407;rank=4 scaffold_1100 . exon 1380 2013 . + . ID=Physo126407.4;Parent=Physo126407;constitutive=1;ensembl_phase=2;rank=4 scaffold_1100 ensembl protein_coding_gene 2120 3047 . - . ID=Physo126409;biotype=protein_coding;external_name=estExt_Genewise1.C_11000017;logic_name=jgi_physo1_1 scaffold_1100 ensembl transcript 2120 3047 . - . ID=Physo126409;Parent=Physo126409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1100 . exon 2120 3047 . - . ID=Physo126409.1;Parent=Physo126409;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1100 . CDS 2586 2834 . - 0 ID=Physo126409;Parent=Physo126409;rank=1 scaffold_1100 ensembl protein_coding_gene 7 483 . + . ID=Physo145355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11000001;logic_name=jgi_physo1_1 scaffold_1100 ensembl transcript 7 483 . + . ID=Physo145355;Parent=Physo145355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1100 . exon 7 483 . + . ID=Physo145355.1;Parent=Physo145355;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1100 . CDS 155 481 . + 0 ID=Physo145355;Parent=Physo145355;rank=1 scaffold_1100 ensembl protein_coding_gene 3219 4202 . + . ID=Physo145358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11000004;logic_name=jgi_physo1_1 scaffold_1100 ensembl transcript 3219 4202 . + . ID=Physo145358;Parent=Physo145358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1100 . CDS 3219 4202 . + 0 ID=Physo145358;Parent=Physo145358;rank=1 scaffold_1100 . exon 3219 4202 . + . ID=Physo145358.1;Parent=Physo145358;constitutive=1;rank=1 scaffold_1100 ensembl protein_coding_gene 4500 5501 . + . ID=Physo145359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_11000005;logic_name=jgi_physo1_1 scaffold_1100 ensembl transcript 4500 5501 . + . ID=Physo145359;Parent=Physo145359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1100 . CDS 4500 5501 . + 0 ID=Physo145359;Parent=Physo145359;rank=1 scaffold_1100 . exon 4500 5501 . + . ID=Physo145359.1;Parent=Physo145359;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1095 1 6183 scaffold_1095 . repeat_region 2790 2843 . ? . description=trf scaffold_1095 . repeat_region 2790 2845 . ? . description=dust scaffold_1095 . repeat_region 2793 2832 . ? . description=trf scaffold_1095 . biological_region 4707 4709 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1093 1 6191 scaffold_1093 . repeat_region 1189 1329 . ? . description=trf scaffold_1093 . repeat_region 2706 2739 . ? . description=trf scaffold_1093 . biological_region 5449 5453 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1094 1 6193 scaffold_1094 . repeat_region 1812 3675 . ? . description=dust scaffold_1094 . repeat_region 3833 3879 . ? . description=dust scaffold_1094 . repeat_region 3840 3876 . ? . description=trf scaffold_1094 . repeat_region 3842 3879 . ? . description=trf scaffold_1094 . repeat_region 3963 4025 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1091 1 6248 scaffold_1091 . repeat_region 3623 3743 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1090 1 6252 scaffold_1090 . repeat_region 1241 2127 . ? . description=dust scaffold_1090 ensembl protein_coding_gene 4410 6252 . + . ID=Physo145353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10900001;logic_name=jgi_physo1_1 scaffold_1090 ensembl transcript 4410 6252 . + . ID=Physo145353;Parent=Physo145353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1090 . exon 4410 4503 . + . ID=Physo145353.1;Parent=Physo145353;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1090 . CDS 4434 4503 . + 0 ID=Physo145353;Parent=Physo145353;rank=1 scaffold_1090 . CDS 4610 4684 . + 0 ID=Physo145353;Parent=Physo145353;rank=2 scaffold_1090 . exon 4610 4684 . + . ID=Physo145353.2;Parent=Physo145353;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1090 . CDS 4775 4875 . + 0 ID=Physo145353;Parent=Physo145353;rank=3 scaffold_1090 . exon 4775 4875 . + . ID=Physo145353.3;Parent=Physo145353;constitutive=1;ensembl_phase=1;rank=3 scaffold_1090 . CDS 4951 5039 . + 0 ID=Physo145353;Parent=Physo145353;rank=4 scaffold_1090 . exon 4951 5039 . + . ID=Physo145353.4;Parent=Physo145353;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1090 . CDS 5111 5154 . + 0 ID=Physo145353;Parent=Physo145353;rank=5 scaffold_1090 . exon 5111 5154 . + . ID=Physo145353.5;Parent=Physo145353;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1090 . CDS 5220 5404 . + 0 ID=Physo145353;Parent=Physo145353;rank=6 scaffold_1090 . exon 5220 5404 . + . ID=Physo145353.6;Parent=Physo145353;constitutive=1;ensembl_phase=1;rank=6 scaffold_1090 . CDS 5475 5578 . + 0 ID=Physo145353;Parent=Physo145353;rank=7 scaffold_1090 . exon 5475 5578 . + . ID=Physo145353.7;Parent=Physo145353;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_1090 . CDS 5649 5894 . + 0 ID=Physo145353;Parent=Physo145353;rank=8 scaffold_1090 . exon 5649 5894 . + . ID=Physo145353.8;Parent=Physo145353;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_1090 . CDS 5968 6089 . + 0 ID=Physo145353;Parent=Physo145353;rank=9 scaffold_1090 . exon 5968 6089 . + . ID=Physo145353.9;Parent=Physo145353;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_1090 . CDS 6165 6250 . + 0 ID=Physo145353;Parent=Physo145353;rank=10 scaffold_1090 . exon 6165 6252 . + . ID=Physo145353.10;Parent=Physo145353;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=10 ##gff-version 3 ##sequence-region scaffold_1092 1 6288 scaffold_1092 . repeat_region 477 869 . - . description=GypsyPi-1c_I-int scaffold_1092 . repeat_region 891 1665 . ? . description=dust scaffold_1092 . repeat_region 2018 3390 . - . description=GypsyPi-1c_I-int scaffold_1092 . repeat_region 3453 4709 . ? . description=dust scaffold_1092 ensembl protein_coding_gene 2343 3056 . - . ID=Physo145354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10920001;logic_name=jgi_physo1_1 scaffold_1092 ensembl transcript 2343 3056 . - . ID=Physo145354;Parent=Physo145354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1092 . CDS 2343 2507 . - 0 ID=Physo145354;Parent=Physo145354;rank=2 scaffold_1092 . exon 2343 2507 . - . ID=Physo145354.2;Parent=Physo145354;constitutive=1;rank=2 scaffold_1092 . CDS 2634 3056 . - 0 ID=Physo145354;Parent=Physo145354;rank=1 scaffold_1092 . exon 2634 3056 . - . ID=Physo145354.1;Parent=Physo145354;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1088 1 6297 scaffold_1088 . repeat_region 1639 1685 . ? . description=dust scaffold_1088 . repeat_region 3035 3225 . - . description=Polinton-1_PI scaffold_1088 . repeat_region 5916 5962 . ? . description=dust scaffold_1088 ensembl protein_coding_gene 3026 3205 . - . ID=Physo126380;biotype=protein_coding;external_name=estExt_Genewise1.C_10880001;logic_name=jgi_physo1_1 scaffold_1088 ensembl transcript 3026 3205 . - . ID=Physo126380;Parent=Physo126380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1088 . CDS 3026 3205 . - 0 ID=Physo126380;Parent=Physo126380;rank=1 scaffold_1088 . exon 3026 3205 . - . ID=Physo126380.1;Parent=Physo126380;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1087 1 6352 scaffold_1087 . repeat_region 3078 3387 . ? . description=dust scaffold_1087 . repeat_region 5388 5407 . ? . description=trf scaffold_1087 . biological_region 5577 5580 0.999 + . logic_name=eponine scaffold_1087 . biological_region 6343 6345 0.999 - . logic_name=eponine scaffold_1087 ensembl protein_coding_gene 405 1934 . - . ID=Physo145349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10870001;logic_name=jgi_physo1_1 scaffold_1087 ensembl transcript 405 1934 . - . ID=Physo145349;Parent=Physo145349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1087 . CDS 405 1934 . - 0 ID=Physo145349;Parent=Physo145349;rank=1 scaffold_1087 . exon 405 1934 . - . ID=Physo145349.1;Parent=Physo145349;constitutive=1;rank=1 scaffold_1087 ensembl protein_coding_gene 2949 4075 . - . ID=Physo145350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10870002;logic_name=jgi_physo1_1 scaffold_1087 ensembl transcript 2949 4075 . - . ID=Physo145350;Parent=Physo145350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1087 . CDS 2949 2982 . - 0 ID=Physo145350;Parent=Physo145350;rank=2 scaffold_1087 . exon 2949 2982 . - . ID=Physo145350.2;Parent=Physo145350;constitutive=1;ensembl_phase=2;rank=2 scaffold_1087 . CDS 3393 4027 . - 0 ID=Physo145350;Parent=Physo145350;rank=1 scaffold_1087 . exon 3393 4075 . - . ID=Physo145350.1;Parent=Physo145350;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1087 ensembl protein_coding_gene 5416 6340 . + . ID=Physo145351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10870003;logic_name=jgi_physo1_1 scaffold_1087 ensembl transcript 5416 6340 . + . ID=Physo145351;Parent=Physo145351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1087 . CDS 5416 6130 . + 0 ID=Physo145351;Parent=Physo145351;rank=1 scaffold_1087 . exon 5416 6130 . + . ID=Physo145351.1;Parent=Physo145351;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1087 . CDS 6207 6340 . + 0 ID=Physo145351;Parent=Physo145351;rank=2 scaffold_1087 . exon 6207 6340 . + . ID=Physo145351.2;Parent=Physo145351;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1089 1 6383 scaffold_1089 . repeat_region 495 519 . ? . description=trf scaffold_1089 . biological_region 1523 1524 0.999 + . logic_name=eponine scaffold_1089 . biological_region 1578 1584 0.999 + . logic_name=eponine scaffold_1089 . biological_region 1610 1615 0.999 + . logic_name=eponine scaffold_1089 . biological_region 1617 1620 0.999 - . logic_name=eponine scaffold_1089 . biological_region 1750 1753 0.999 + . logic_name=eponine scaffold_1089 . biological_region 2068 2071 0.999 + . logic_name=eponine scaffold_1089 . repeat_region 2157 2206 . ? . description=dust scaffold_1089 . biological_region 2439 2439 0.999 - . logic_name=eponine scaffold_1089 . biological_region 2495 2498 0.999 - . logic_name=eponine scaffold_1089 . repeat_region 4804 4853 . ? . description=dust scaffold_1089 . biological_region 5634 5635 0.999 + . logic_name=eponine scaffold_1089 ensembl protein_coding_gene 1030 2297 . - . ID=Physo145352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10890001;logic_name=jgi_physo1_1 scaffold_1089 ensembl transcript 1030 2297 . - . ID=Physo145352;Parent=Physo145352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1089 . CDS 1030 2104 . - 0 ID=Physo145352;Parent=Physo145352;rank=2 scaffold_1089 . exon 1030 2104 . - . ID=Physo145352.2;Parent=Physo145352;constitutive=1;ensembl_phase=2;rank=2 scaffold_1089 . CDS 2278 2297 . - 0 ID=Physo145352;Parent=Physo145352;rank=1 scaffold_1089 . exon 2278 2297 . - . ID=Physo145352.1;Parent=Physo145352;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1086 1 6414 scaffold_1086 . repeat_region 234 272 . ? . description=trf scaffold_1086 . repeat_region 312 342 . ? . description=trf scaffold_1086 . repeat_region 347 384 . ? . description=trf scaffold_1086 . biological_region 1159 1160 0.999 - . logic_name=eponine scaffold_1086 . repeat_region 1744 4648 . ? . description=dust scaffold_1086 . biological_region 4678 4678 0.999 + . logic_name=eponine scaffold_1086 . biological_region 4701 4703 0.999 + . logic_name=eponine scaffold_1086 . repeat_region 4730 4793 . ? . description=dust scaffold_1086 . biological_region 5168 5171 0.999 - . logic_name=eponine scaffold_1086 . biological_region 5940 5943 0.999 + . logic_name=eponine scaffold_1086 . repeat_region 6170 6178 . ? . description=dust scaffold_1086 ensembl protein_coding_gene 680 1015 . - . ID=Physo109733;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10860001;logic_name=jgi_physo1_1 scaffold_1086 ensembl transcript 680 1015 . - . ID=Physo109733;Parent=Physo109733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1086 . CDS 680 1015 . - 0 ID=Physo109733;Parent=Physo109733;rank=1 scaffold_1086 . exon 680 1015 . - . ID=Physo109733.1;Parent=Physo109733;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1085 1 6467 scaffold_1085 . repeat_region 866 897 . ? . description=trf scaffold_1085 . biological_region 3102 3103 0.999 + . logic_name=eponine scaffold_1085 . repeat_region 3436 3443 . ? . description=dust scaffold_1085 . repeat_region 3539 3604 . ? . description=trf scaffold_1085 . repeat_region 3539 3628 . ? . description=trf scaffold_1085 . repeat_region 3548 3624 . ? . description=trf scaffold_1085 . repeat_region 3920 3938 . ? . description=dust scaffold_1085 . repeat_region 4602 4623 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1084 1 6472 scaffold_1084 . repeat_region 1042 2354 . ? . description=dust scaffold_1084 . repeat_region 2372 2452 . ? . description=trf scaffold_1084 . repeat_region 2612 2619 . ? . description=dust scaffold_1084 . biological_region 2762 2763 0.999 + . logic_name=eponine scaffold_1084 . biological_region 2824 2827 0.999 - . logic_name=eponine scaffold_1084 . biological_region 2840 2843 0.999 - . logic_name=eponine scaffold_1084 . biological_region 2876 2884 0.999 - . logic_name=eponine scaffold_1084 . repeat_region 2912 2921 . ? . description=dust scaffold_1084 . repeat_region 2979 3027 . ? . description=trf scaffold_1084 . biological_region 3279 3279 0.999 - . logic_name=eponine scaffold_1084 . repeat_region 3677 5115 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1083 1 6501 scaffold_1083 . repeat_region 242 249 . ? . description=dust scaffold_1083 . biological_region 3075 3077 0.999 - . logic_name=eponine scaffold_1083 . biological_region 3303 3304 0.999 + . logic_name=eponine scaffold_1083 . biological_region 3553 3556 0.999 - . logic_name=eponine scaffold_1083 . biological_region 4373 4375 0.999 + . logic_name=eponine scaffold_1083 ensembl protein_coding_gene 4105 5181 . + . ID=Physo109732;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10830001;logic_name=jgi_physo1_1 scaffold_1083 ensembl transcript 4105 5181 . + . ID=Physo109732;Parent=Physo109732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1083 . CDS 4105 4242 . + 0 ID=Physo109732;Parent=Physo109732;rank=1 scaffold_1083 . exon 4105 4242 . + . ID=Physo109732.1;Parent=Physo109732;constitutive=1;rank=1 scaffold_1083 . CDS 4338 4982 . + 0 ID=Physo109732;Parent=Physo109732;rank=2 scaffold_1083 . exon 4338 4982 . + . ID=Physo109732.2;Parent=Physo109732;constitutive=1;rank=2 scaffold_1083 . CDS 5068 5097 . + 0 ID=Physo109732;Parent=Physo109732;rank=3 scaffold_1083 . exon 5068 5181 . + . ID=Physo109732.3;Parent=Physo109732;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1083 ensembl protein_coding_gene 445 2290 . - . ID=Physo145345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10830001;logic_name=jgi_physo1_1 scaffold_1083 ensembl transcript 445 2290 . - . ID=Physo145345;Parent=Physo145345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1083 . CDS 445 1830 . - 0 ID=Physo145345;Parent=Physo145345;rank=2 scaffold_1083 . exon 445 1830 . - . ID=Physo145345.2;Parent=Physo145345;constitutive=1;rank=2 scaffold_1083 . CDS 1943 2290 . - 0 ID=Physo145345;Parent=Physo145345;rank=1 scaffold_1083 . exon 1943 2290 . - . ID=Physo145345.1;Parent=Physo145345;constitutive=1;rank=1 scaffold_1083 ensembl protein_coding_gene 5920 6489 . + . ID=Physo145347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10830003;logic_name=jgi_physo1_1 scaffold_1083 ensembl transcript 5920 6489 . + . ID=Physo145347;Parent=Physo145347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1083 . CDS 5920 6489 . + 0 ID=Physo145347;Parent=Physo145347;rank=1 scaffold_1083 . exon 5920 6489 . + . ID=Physo145347.1;Parent=Physo145347;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1080 1 6550 scaffold_1080 . repeat_region 1178 2694 . ? . description=dust scaffold_1080 . biological_region 4053 4056 0.999 - . logic_name=eponine scaffold_1080 . repeat_region 4262 5550 . ? . description=dust scaffold_1080 ensembl protein_coding_gene 2710 6057 . + . ID=Physo145344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10800001;logic_name=jgi_physo1_1 scaffold_1080 ensembl transcript 2710 6057 . + . ID=Physo145344;Parent=Physo145344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1080 . CDS 2710 4251 . + 0 ID=Physo145344;Parent=Physo145344;rank=1 scaffold_1080 . exon 2710 4251 . + . ID=Physo145344.1;Parent=Physo145344;constitutive=1;rank=1 scaffold_1080 . CDS 5557 6057 . + 0 ID=Physo145344;Parent=Physo145344;rank=2 scaffold_1080 . exon 5557 6057 . + . ID=Physo145344.2;Parent=Physo145344;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1079 1 6596 scaffold_1079 . biological_region 704 707 0.999 + . logic_name=eponine scaffold_1079 . repeat_region 1240 2803 . ? . description=dust scaffold_1079 . repeat_region 3890 3897 . ? . description=dust scaffold_1079 . repeat_region 4286 5271 . ? . description=dust scaffold_1079 . repeat_region 5987 6044 . ? . description=dust scaffold_1079 . repeat_region 5987 6044 . ? . description=trf scaffold_1079 ensembl protein_coding_gene 1 1147 . + . ID=Physo145343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10790001;logic_name=jgi_physo1_1 scaffold_1079 ensembl transcript 1 1147 . + . ID=Physo145343;Parent=Physo145343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1079 . CDS 1 119 . + 0 ID=Physo145343;Parent=Physo145343;rank=1 scaffold_1079 . exon 1 119 . + . ID=Physo145343.1;Parent=Physo145343;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1079 . CDS 298 1147 . + 0 ID=Physo145343;Parent=Physo145343;rank=2 scaffold_1079 . exon 298 1147 . + . ID=Physo145343.2;Parent=Physo145343;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_1075 1 6624 scaffold_1075 . repeat_region 1531 1804 . ? . description=dust scaffold_1075 . repeat_region 4802 4834 . ? . description=trf scaffold_1075 . biological_region 4938 4940 0.999 + . logic_name=eponine scaffold_1075 . repeat_region 5851 5900 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1077 1 6640 scaffold_1077 . repeat_region 118 1267 . - . description=Polinton-1_PI scaffold_1077 . repeat_region 1277 2690 . ? . description=dust scaffold_1077 . repeat_region 4013 5670 . ? . description=dust scaffold_1077 . repeat_region 6066 6640 . - . description=Polinton-1_PI scaffold_1077 . repeat_region 6082 6118 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1046 1 6651 scaffold_1046 . biological_region 1706 1708 0.999 + . logic_name=eponine scaffold_1046 . repeat_region 1927 1962 . ? . description=trf scaffold_1046 . repeat_region 1964 1997 . ? . description=trf scaffold_1046 . repeat_region 2037 2089 . ? . description=trf scaffold_1046 . repeat_region 2037 2089 . ? . description=trf scaffold_1046 . biological_region 2247 2248 0.999 + . logic_name=eponine scaffold_1046 . repeat_region 4488 5643 . ? . description=dust scaffold_1046 ensembl protein_coding_gene 1 3013 . + . ID=Physo145326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10460001;logic_name=jgi_physo1_1 scaffold_1046 ensembl transcript 1 3013 . + . ID=Physo145326;Parent=Physo145326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1046 . exon 1 1880 . + . ID=Physo145326.1;Parent=Physo145326;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1046 . CDS 173 1880 . + 0 ID=Physo145326;Parent=Physo145326;rank=1 scaffold_1046 . CDS 2298 3013 . + 0 ID=Physo145326;Parent=Physo145326;rank=2 scaffold_1046 . exon 2298 3013 . + . ID=Physo145326.2;Parent=Physo145326;constitutive=1;ensembl_phase=1;rank=2 scaffold_1046 ensembl protein_coding_gene 4188 6641 . - . ID=Physo145327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10460002;logic_name=jgi_physo1_1 scaffold_1046 ensembl transcript 4188 6641 . - . ID=Physo145327;Parent=Physo145327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1046 . CDS 4188 4414 . - 0 ID=Physo145327;Parent=Physo145327;rank=2 scaffold_1046 . exon 4188 4414 . - . ID=Physo145327.2;Parent=Physo145327;constitutive=1;ensembl_phase=1;rank=2 scaffold_1046 . CDS 5714 6641 . - 0 ID=Physo145327;Parent=Physo145327;rank=1 scaffold_1046 . exon 5714 6641 . - . ID=Physo145327.1;Parent=Physo145327;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1078 1 6660 scaffold_1078 . biological_region 1109 1113 0.999 + . logic_name=eponine scaffold_1078 . repeat_region 1235 2818 . ? . description=dust scaffold_1078 . repeat_region 3180 3230 . ? . description=trf scaffold_1078 . repeat_region 3180 3232 . ? . description=trf scaffold_1078 . repeat_region 3293 3330 . ? . description=trf scaffold_1078 . biological_region 3992 3996 0.999 + . logic_name=eponine scaffold_1078 . repeat_region 4009 4108 . ? . description=trf scaffold_1078 . repeat_region 4020 4115 . ? . description=trf scaffold_1078 . repeat_region 4192 5632 . ? . description=dust scaffold_1078 ensembl protein_coding_gene 1 3033 . - . ID=Physo145342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10780001;logic_name=jgi_physo1_1 scaffold_1078 ensembl transcript 1 3033 . - . ID=Physo145342;Parent=Physo145342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1078 . exon 1 1190 . - . ID=Physo145342.2;Parent=Physo145342;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1078 . CDS 3 1190 . - 0 ID=Physo145342;Parent=Physo145342;rank=2 scaffold_1078 . CDS 2833 3033 . - 0 ID=Physo145342;Parent=Physo145342;rank=1 scaffold_1078 . exon 2833 3033 . - . ID=Physo145342.1;Parent=Physo145342;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1019 1 6687 scaffold_1019 . repeat_region 827 846 . ? . description=trf scaffold_1019 . repeat_region 876 925 . ? . description=dust scaffold_1019 . biological_region 1728 1730 0.999 + . logic_name=eponine scaffold_1019 . biological_region 1906 1910 0.999 + . logic_name=eponine scaffold_1019 . repeat_region 2149 2168 . ? . description=trf scaffold_1019 . biological_region 2210 2212 0.999 - . logic_name=eponine scaffold_1019 . biological_region 3519 3519 0.999 - . logic_name=eponine scaffold_1019 . biological_region 3589 3589 0.999 - . logic_name=eponine scaffold_1019 . biological_region 3595 3596 0.999 + . logic_name=eponine scaffold_1019 . biological_region 4116 4117 0.999 + . logic_name=eponine scaffold_1019 . biological_region 4142 4144 0.999 - . logic_name=eponine scaffold_1019 . biological_region 4226 4228 0.999 - . logic_name=eponine scaffold_1019 . biological_region 4298 4300 0.999 - . logic_name=eponine scaffold_1019 . biological_region 4384 4386 0.999 + . logic_name=eponine scaffold_1019 . biological_region 4711 4716 0.999 + . logic_name=eponine scaffold_1019 . biological_region 4751 4752 0.999 - . logic_name=eponine scaffold_1019 . biological_region 4793 4796 0.999 - . logic_name=eponine scaffold_1019 . repeat_region 4994 5003 . ? . description=dust scaffold_1019 . biological_region 5090 5093 0.999 - . logic_name=eponine scaffold_1019 . biological_region 5146 5152 0.999 + . logic_name=eponine scaffold_1019 . biological_region 5208 5212 0.999 - . logic_name=eponine scaffold_1019 . biological_region 5346 5347 0.999 + . logic_name=eponine scaffold_1019 . biological_region 5359 5365 0.999 + . logic_name=eponine scaffold_1019 . biological_region 5418 5419 0.999 - . logic_name=eponine scaffold_1019 . biological_region 5445 5449 0.999 - . logic_name=eponine scaffold_1019 . biological_region 5502 5503 0.999 + . logic_name=eponine scaffold_1019 . biological_region 6286 6289 0.999 - . logic_name=eponine scaffold_1019 . repeat_region 6320 6355 . ? . description=trf scaffold_1019 . biological_region 6330 6333 0.999 - . logic_name=eponine scaffold_1019 . biological_region 6412 6417 0.999 - . logic_name=eponine scaffold_1019 ensembl protein_coding_gene 581 2069 . - . ID=Physo145321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10190001;logic_name=jgi_physo1_1 scaffold_1019 ensembl transcript 581 2069 . - . ID=Physo145321;Parent=Physo145321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1019 . CDS 581 591 . - 0 ID=Physo145321;Parent=Physo145321;rank=3 scaffold_1019 . exon 581 591 . - . ID=Physo145321.3;Parent=Physo145321;constitutive=1;ensembl_phase=1;rank=3 scaffold_1019 . CDS 941 1432 . - 0 ID=Physo145321;Parent=Physo145321;rank=2 scaffold_1019 . exon 941 1432 . - . ID=Physo145321.2;Parent=Physo145321;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1019 . CDS 1493 2069 . - 0 ID=Physo145321;Parent=Physo145321;rank=1 scaffold_1019 . exon 1493 2069 . - . ID=Physo145321.1;Parent=Physo145321;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1019 ensembl protein_coding_gene 6085 6641 . + . ID=Physo145322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10190002;logic_name=jgi_physo1_1 scaffold_1019 ensembl transcript 6085 6641 . + . ID=Physo145322;Parent=Physo145322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1019 . CDS 6085 6639 . + 0 ID=Physo145322;Parent=Physo145322;rank=1 scaffold_1019 . exon 6085 6641 . + . ID=Physo145322.1;Parent=Physo145322;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1074 1 6745 scaffold_1074 . biological_region 388 394 0.999 - . logic_name=eponine scaffold_1074 . biological_region 414 418 0.999 - . logic_name=eponine scaffold_1074 . biological_region 468 477 0.999 + . logic_name=eponine scaffold_1074 . biological_region 491 495 0.999 - . logic_name=eponine scaffold_1074 . biological_region 688 689 0.999 + . logic_name=eponine scaffold_1074 . biological_region 2356 2361 0.999 - . logic_name=eponine scaffold_1074 . biological_region 3418 3418 0.999 - . logic_name=eponine scaffold_1074 . biological_region 4035 4041 0.999 + . logic_name=eponine scaffold_1074 . biological_region 4086 4089 0.999 + . logic_name=eponine scaffold_1074 . repeat_region 4471 4478 . ? . description=dust scaffold_1074 ensembl protein_coding_gene 1 3911 . - . ID=Physo145341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10740001;logic_name=jgi_physo1_1 scaffold_1074 ensembl transcript 1 3911 . - . ID=Physo145341;Parent=Physo145341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1074 . exon 1 3911 . - . ID=Physo145341.1;Parent=Physo145341;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1074 . CDS 2049 3905 . - 0 ID=Physo145341;Parent=Physo145341;rank=1 ##gff-version 3 ##sequence-region scaffold_1073 1 6763 scaffold_1073 . repeat_region 170 206 . ? . description=trf scaffold_1073 . repeat_region 1527 1535 . ? . description=dust scaffold_1073 . repeat_region 2014 4399 . ? . description=dust scaffold_1073 . biological_region 4504 4505 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1076 1 6797 scaffold_1076 . biological_region 145 146 0.999 + . logic_name=eponine scaffold_1076 . repeat_region 760 769 . ? . description=dust scaffold_1076 . repeat_region 1861 1894 . ? . description=trf scaffold_1076 . repeat_region 2117 2166 . ? . description=dust scaffold_1076 . repeat_region 3685 3698 . ? . description=dust scaffold_1076 . repeat_region 3740 3789 . ? . description=dust scaffold_1076 . repeat_region 5073 5081 . ? . description=dust scaffold_1076 . repeat_region 5213 5262 . ? . description=dust scaffold_1076 . repeat_region 5755 5884 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1069 1 6805 scaffold_1069 . repeat_region 856 2667 . ? . description=dust scaffold_1069 . repeat_region 4340 5592 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1081 1 6827 scaffold_1081 . repeat_region 1036 2679 . ? . description=dust scaffold_1081 . repeat_region 3814 5670 . ? . description=dust scaffold_1081 . repeat_region 6018 6080 . ? . description=trf scaffold_1081 . repeat_region 6150 6230 . ? . description=trf scaffold_1081 . repeat_region 6727 6827 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1070 1 6851 scaffold_1070 . biological_region 2316 2320 0.999 - . logic_name=eponine scaffold_1070 . repeat_region 5288 5337 . ? . description=dust scaffold_1070 . repeat_region 5341 6851 . + . description=Sola3-1_PS scaffold_1070 ensembl protein_coding_gene 2166 3080 . + . ID=Physo109731;biotype=protein_coding;description=Glucanase inhibitor protein 1 [Source:UniProtKB/TrEMBL%3BAcc:Q945U0];external_name=estExt_fgenesh1_pm.C_10700001;logic_name=jgi_physo1_1 scaffold_1070 ensembl transcript 2166 3080 . + . ID=Physo109731;Parent=Physo109731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1070 . CDS 2166 2939 . + 0 ID=Physo109731;Parent=Physo109731;rank=1 scaffold_1070 . exon 2166 3080 . + . ID=Physo109731.1;Parent=Physo109731;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_588 1 6875 scaffold_588 . biological_region 2117 2122 0.999 + . logic_name=eponine scaffold_588 . biological_region 2953 2957 0.999 + . logic_name=eponine scaffold_588 . repeat_region 3233 3675 . ? . description=dust scaffold_588 . biological_region 4060 4063 0.999 + . logic_name=eponine scaffold_588 . biological_region 4110 4112 0.999 + . logic_name=eponine scaffold_588 . biological_region 4121 4123 0.999 - . logic_name=eponine scaffold_588 . biological_region 4193 4196 0.999 - . logic_name=eponine scaffold_588 . biological_region 4824 4826 0.999 - . logic_name=eponine scaffold_588 ensembl protein_coding_gene 1879 3755 . + . ID=Physo145182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5880001;logic_name=jgi_physo1_1 scaffold_588 ensembl transcript 1879 3755 . + . ID=Physo145182;Parent=Physo145182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_588 . exon 1879 3229 . + . ID=Physo145182.1;Parent=Physo145182;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_588 . CDS 1917 3229 . + 0 ID=Physo145182;Parent=Physo145182;rank=1 scaffold_588 . CDS 3752 3755 . + 0 ID=Physo145182;Parent=Physo145182;rank=2 scaffold_588 . exon 3752 3755 . + . ID=Physo145182.2;Parent=Physo145182;constitutive=1;ensembl_phase=2;rank=2 scaffold_588 ensembl protein_coding_gene 3949 6534 . + . ID=Physo145183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5880002;logic_name=jgi_physo1_1 scaffold_588 ensembl transcript 3949 6534 . + . ID=Physo145183;Parent=Physo145183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_588 . CDS 3949 6534 . + 0 ID=Physo145183;Parent=Physo145183;rank=1 scaffold_588 . exon 3949 6534 . + . ID=Physo145183.1;Parent=Physo145183;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1062 1 6878 scaffold_1062 . biological_region 1537 1539 0.999 + . logic_name=eponine scaffold_1062 . biological_region 1881 1884 0.999 - . logic_name=eponine scaffold_1062 . biological_region 1920 1925 0.999 + . logic_name=eponine scaffold_1062 . repeat_region 2081 2088 . ? . description=dust scaffold_1062 . biological_region 2663 2664 0.999 + . logic_name=eponine scaffold_1062 . biological_region 3562 3567 0.999 - . logic_name=eponine scaffold_1062 . biological_region 3620 3624 0.999 + . logic_name=eponine scaffold_1062 . repeat_region 5673 5708 . ? . description=trf scaffold_1062 . repeat_region 6255 6264 . ? . description=dust scaffold_1062 . repeat_region 6315 6322 . ? . description=dust scaffold_1062 ensembl protein_coding_gene 194 4037 . - . ID=Physo145332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10620001;logic_name=jgi_physo1_1 scaffold_1062 ensembl transcript 194 4037 . - . ID=Physo145332;Parent=Physo145332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1062 . CDS 194 482 . - 0 ID=Physo145332;Parent=Physo145332;rank=6 scaffold_1062 . exon 194 482 . - . ID=Physo145332.6;Parent=Physo145332;constitutive=1;ensembl_phase=2;rank=6 scaffold_1062 . CDS 623 1818 . - 0 ID=Physo145332;Parent=Physo145332;rank=5 scaffold_1062 . exon 623 1818 . - . ID=Physo145332.5;Parent=Physo145332;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1062 . CDS 2327 2818 . - 0 ID=Physo145332;Parent=Physo145332;rank=4 scaffold_1062 . exon 2327 2818 . - . ID=Physo145332.4;Parent=Physo145332;constitutive=1;rank=4 scaffold_1062 . CDS 2854 3065 . - 0 ID=Physo145332;Parent=Physo145332;rank=3 scaffold_1062 . exon 2854 3065 . - . ID=Physo145332.3;Parent=Physo145332;constitutive=1;ensembl_phase=1;rank=3 scaffold_1062 . CDS 3239 3566 . - 0 ID=Physo145332;Parent=Physo145332;rank=2 scaffold_1062 . exon 3239 3566 . - . ID=Physo145332.2;Parent=Physo145332;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1062 . CDS 3702 3830 . - 0 ID=Physo145332;Parent=Physo145332;rank=1 scaffold_1062 . exon 3702 4037 . - . ID=Physo145332.1;Parent=Physo145332;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1062 ensembl protein_coding_gene 4217 6158 . + . ID=Physo145333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10620002;logic_name=jgi_physo1_1 scaffold_1062 ensembl transcript 4217 6158 . + . ID=Physo145333;Parent=Physo145333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1062 . CDS 4217 4391 . + 0 ID=Physo145333;Parent=Physo145333;rank=1 scaffold_1062 . exon 4217 4391 . + . ID=Physo145333.1;Parent=Physo145333;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1062 . CDS 4469 4668 . + 0 ID=Physo145333;Parent=Physo145333;rank=2 scaffold_1062 . exon 4469 4668 . + . ID=Physo145333.2;Parent=Physo145333;constitutive=1;ensembl_phase=1;rank=2 scaffold_1062 . CDS 4750 5703 . + 0 ID=Physo145333;Parent=Physo145333;rank=3 scaffold_1062 . exon 4750 5703 . + . ID=Physo145333.3;Parent=Physo145333;constitutive=1;rank=3 scaffold_1062 . CDS 5807 5835 . + 0 ID=Physo145333;Parent=Physo145333;rank=4 scaffold_1062 . exon 5807 5835 . + . ID=Physo145333.4;Parent=Physo145333;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1062 . CDS 6059 6158 . + 0 ID=Physo145333;Parent=Physo145333;rank=5 scaffold_1062 . exon 6059 6158 . + . ID=Physo145333.5;Parent=Physo145333;constitutive=1;ensembl_phase=2;rank=5 ##gff-version 3 ##sequence-region scaffold_1065 1 6879 scaffold_1065 . biological_region 372 372 0.999 - . logic_name=eponine scaffold_1065 . biological_region 1254 1259 0.999 + . logic_name=eponine scaffold_1065 . repeat_region 5015 5035 . ? . description=dust scaffold_1065 ensembl protein_coding_gene 6534 6806 . - . ID=Physo126346;biotype=protein_coding;external_name=estExt_Genewise1.C_10650002;logic_name=jgi_physo1_1 scaffold_1065 ensembl transcript 6534 6806 . - . ID=Physo126346;Parent=Physo126346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1065 . CDS 6534 6794 . - 0 ID=Physo126346;Parent=Physo126346;rank=1 scaffold_1065 . exon 6534 6806 . - . ID=Physo126346.1;Parent=Physo126346;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1065 ensembl protein_coding_gene 7 1824 . + . ID=Physo145336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10650001;logic_name=jgi_physo1_1 scaffold_1065 ensembl transcript 7 1824 . + . ID=Physo145336;Parent=Physo145336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1065 . exon 7 1824 . + . ID=Physo145336.1;Parent=Physo145336;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1065 . CDS 143 1657 . + 0 ID=Physo145336;Parent=Physo145336;rank=1 scaffold_1065 ensembl protein_coding_gene 1860 2540 . - . ID=Physo145337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10650002;logic_name=jgi_physo1_1 scaffold_1065 ensembl transcript 1860 2540 . - . ID=Physo145337;Parent=Physo145337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1065 . CDS 1860 2078 . - 0 ID=Physo145337;Parent=Physo145337;rank=3 scaffold_1065 . exon 1860 2078 . - . ID=Physo145337.3;Parent=Physo145337;constitutive=1;rank=3 scaffold_1065 . CDS 2168 2321 . - 0 ID=Physo145337;Parent=Physo145337;rank=2 scaffold_1065 . exon 2168 2321 . - . ID=Physo145337.2;Parent=Physo145337;constitutive=1;ensembl_phase=2;rank=2 scaffold_1065 . CDS 2473 2540 . - 0 ID=Physo145337;Parent=Physo145337;rank=1 scaffold_1065 . exon 2473 2540 . - . ID=Physo145337.1;Parent=Physo145337;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1058 1 6881 scaffold_1058 . repeat_region 1075 1082 . ? . description=dust scaffold_1058 . repeat_region 2003 2029 . ? . description=trf scaffold_1058 . repeat_region 2280 2423 . ? . description=dust scaffold_1058 . repeat_region 2424 2544 . ? . description=trf scaffold_1058 . repeat_region 4190 4198 . ? . description=dust scaffold_1058 . repeat_region 6015 6213 . ? . description=dust scaffold_1058 ensembl protein_coding_gene 6241 6750 . - . ID=Physo126333;biotype=protein_coding;external_name=estExt_Genewise1.C_10580001;logic_name=jgi_physo1_1 scaffold_1058 ensembl transcript 6241 6750 . - . ID=Physo126333;Parent=Physo126333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1058 . CDS 6241 6585 . - 0 ID=Physo126333;Parent=Physo126333;rank=1 scaffold_1058 . exon 6241 6750 . - . ID=Physo126333.1;Parent=Physo126333;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1058 ensembl protein_coding_gene 1090 1599 . - . ID=Physo126334;biotype=protein_coding;external_name=estExt_Genewise1.C_10580002;logic_name=jgi_physo1_1 scaffold_1058 ensembl transcript 1090 1599 . - . ID=Physo126334;Parent=Physo126334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1058 . CDS 1090 1434 . - 0 ID=Physo126334;Parent=Physo126334;rank=1 scaffold_1058 . exon 1090 1599 . - . ID=Physo126334.1;Parent=Physo126334;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1082 1 6894 scaffold_1082 . repeat_region 282 1010 . - . description=GypsyPi-1c_I-int scaffold_1082 . biological_region 401 406 0.999 + . logic_name=eponine scaffold_1082 . biological_region 851 854 0.999 - . logic_name=eponine scaffold_1082 . repeat_region 902 927 . ? . description=trf scaffold_1082 . repeat_region 1034 1254 . ? . description=dust scaffold_1082 . biological_region 2266 2266 0.999 - . logic_name=eponine scaffold_1082 . biological_region 2818 2821 0.999 + . logic_name=eponine scaffold_1082 . repeat_region 2873 2922 . ? . description=dust scaffold_1082 . repeat_region 2925 3343 . - . description=GypsyPi-1c_I-int scaffold_1082 . biological_region 3263 3268 0.999 + . logic_name=eponine scaffold_1082 . biological_region 3701 3705 0.999 + . logic_name=eponine scaffold_1082 . repeat_region 3805 3996 . ? . description=trf scaffold_1082 . repeat_region 3805 3999 . ? . description=trf scaffold_1082 . repeat_region 3828 4003 . ? . description=trf scaffold_1082 . biological_region 4332 4332 0.999 + . logic_name=eponine scaffold_1082 . biological_region 4668 4670 0.999 + . logic_name=eponine scaffold_1082 . biological_region 4692 4697 0.999 - . logic_name=eponine scaffold_1082 . biological_region 4889 4890 0.999 + . logic_name=eponine scaffold_1082 . repeat_region 5023 5145 . ? . description=dust scaffold_1082 . biological_region 5276 5280 0.999 + . logic_name=eponine scaffold_1082 . repeat_region 5428 5754 . - . description=GypsyPi-1c_I-int scaffold_1082 ensembl pseudogenic_tRNA 2212 2283 . + . ID=EPrPSOG00000000227;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_1082 ensembl transcript 2212 2283 . + . ID=EPrPSOT00000000227;Parent=EPrPSOG00000000227;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_1082 . exon 2212 2283 . + . ID=EPrPSOE00000000227;Parent=EPrPSOT00000000227;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1059 1 6895 scaffold_1059 . biological_region 97 97 0.999 + . logic_name=eponine scaffold_1059 . biological_region 1718 1722 0.999 - . logic_name=eponine scaffold_1059 . biological_region 2552 2557 0.999 - . logic_name=eponine scaffold_1059 . biological_region 6010 6015 0.999 - . logic_name=eponine scaffold_1059 . biological_region 6129 6129 0.999 + . logic_name=eponine scaffold_1059 ensembl protein_coding_gene 1141 2794 . - . ID=Physo145330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10590001;logic_name=jgi_physo1_1 scaffold_1059 ensembl transcript 1141 2794 . - . ID=Physo145330;Parent=Physo145330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1059 . CDS 1141 1850 . - 0 ID=Physo145330;Parent=Physo145330;rank=2 scaffold_1059 . exon 1141 1850 . - . ID=Physo145330.2;Parent=Physo145330;constitutive=1;ensembl_phase=1;rank=2 scaffold_1059 . CDS 1967 2756 . - 0 ID=Physo145330;Parent=Physo145330;rank=1 scaffold_1059 . exon 1967 2794 . - . ID=Physo145330.1;Parent=Physo145330;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1059 ensembl protein_coding_gene 4524 6252 . - . ID=Physo145331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10590002;logic_name=jgi_physo1_1 scaffold_1059 ensembl transcript 4524 6252 . - . ID=Physo145331;Parent=Physo145331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1059 . exon 4524 6252 . - . ID=Physo145331.1;Parent=Physo145331;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1059 . CDS 4598 6214 . - 0 ID=Physo145331;Parent=Physo145331;rank=1 ##gff-version 3 ##sequence-region scaffold_1068 1 6912 scaffold_1068 . repeat_region 1 3742 . - . description=Polinton-1_PI scaffold_1068 . repeat_region 1226 2002 . ? . description=dust scaffold_1068 . repeat_region 3746 4339 . ? . description=dust scaffold_1068 . repeat_region 5247 5286 . ? . description=trf scaffold_1068 . repeat_region 5340 5608 . - . description=Polinton-1_PI scaffold_1068 . repeat_region 5653 5756 . + . description=Polinton-1_PI scaffold_1068 . biological_region 6256 6259 0.999 - . logic_name=eponine scaffold_1068 ensembl protein_coding_gene 6680 6826 . - . ID=Physo126347;biotype=protein_coding;external_name=estExt_Genewise1.C_10680001;logic_name=jgi_physo1_1 scaffold_1068 ensembl transcript 6680 6826 . - . ID=Physo126347;Parent=Physo126347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1068 . exon 6680 6826 . - . ID=Physo126347.1;Parent=Physo126347;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1068 . CDS 6715 6825 . - 0 ID=Physo126347;Parent=Physo126347;rank=1 scaffold_1068 ensembl protein_coding_gene 2070 3602 . - . ID=Physo145338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10680001;logic_name=jgi_physo1_1 scaffold_1068 ensembl transcript 2070 3602 . - . ID=Physo145338;Parent=Physo145338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1068 . CDS 2070 2077 . - 0 ID=Physo145338;Parent=Physo145338;rank=3 scaffold_1068 . exon 2070 2077 . - . ID=Physo145338.3;Parent=Physo145338;constitutive=1;ensembl_phase=1;rank=3 scaffold_1068 . CDS 2113 3043 . - 0 ID=Physo145338;Parent=Physo145338;rank=2 scaffold_1068 . exon 2113 3043 . - . ID=Physo145338.2;Parent=Physo145338;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1068 . CDS 3081 3602 . - 0 ID=Physo145338;Parent=Physo145338;rank=1 scaffold_1068 . exon 3081 3602 . - . ID=Physo145338.1;Parent=Physo145338;constitutive=1;rank=1 scaffold_1068 ensembl pseudogene 4455 5520 . - . ID=Physo145339;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_10680002;logic_name=jgi_physo1_1 scaffold_1068 ensembl pseudogene 4455 5520 . - . ID=Physo145339;Parent=Physo145339;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_1068 . exon 4455 5520 . - . ID=Physo145339.1;Parent=Physo145339;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_1054 1 6973 scaffold_1054 . repeat_region 1229 2030 . ? . description=dust scaffold_1054 . repeat_region 3896 4419 . ? . description=dust scaffold_1054 . repeat_region 5774 5793 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1053 1 6976 scaffold_1053 . repeat_region 720 743 . ? . description=trf scaffold_1053 . repeat_region 787 3161 . ? . description=dust scaffold_1053 . biological_region 3520 3521 0.999 + . logic_name=eponine scaffold_1053 . biological_region 3687 3688 0.999 - . logic_name=eponine scaffold_1053 . repeat_region 4792 6002 . ? . description=dust scaffold_1053 ensembl protein_coding_gene 3532 4043 . - . ID=Physo145328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10530001;logic_name=jgi_physo1_1 scaffold_1053 ensembl transcript 3532 4043 . - . ID=Physo145328;Parent=Physo145328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1053 . CDS 3532 3848 . - 0 ID=Physo145328;Parent=Physo145328;rank=2 scaffold_1053 . exon 3532 3848 . - . ID=Physo145328.2;Parent=Physo145328;constitutive=1;ensembl_phase=1;rank=2 scaffold_1053 . CDS 4037 4043 . - 0 ID=Physo145328;Parent=Physo145328;rank=1 scaffold_1053 . exon 4037 4043 . - . ID=Physo145328.1;Parent=Physo145328;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1057 1 6988 scaffold_1057 . repeat_region 1408 3248 . ? . description=dust scaffold_1057 . repeat_region 4243 4250 . ? . description=dust scaffold_1057 . repeat_region 4333 5965 . ? . description=dust scaffold_1057 . repeat_region 6602 6855 . + . description=Polinton-1_PI scaffold_1057 ensembl protein_coding_gene 6672 6884 . + . ID=Physo126332;biotype=protein_coding;external_name=estExt_Genewise1.C_10570001;logic_name=jgi_physo1_1 scaffold_1057 ensembl transcript 6672 6884 . + . ID=Physo126332;Parent=Physo126332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1057 . exon 6672 6884 . + . ID=Physo126332.1;Parent=Physo126332;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1057 . CDS 6688 6882 . + 0 ID=Physo126332;Parent=Physo126332;rank=1 ##gff-version 3 ##sequence-region scaffold_1052 1 6996 scaffold_1052 . repeat_region 386 577 . ? . description=trf scaffold_1052 . repeat_region 1144 6123 . ? . description=dust scaffold_1052 . repeat_region 6517 6540 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1038 1 6997 scaffold_1038 . repeat_region 1027 1076 . ? . description=dust scaffold_1038 . repeat_region 1921 1940 . ? . description=trf scaffold_1038 . repeat_region 2348 2962 . ? . description=dust scaffold_1038 . repeat_region 3877 3900 . ? . description=trf scaffold_1038 . repeat_region 4110 4163 . ? . description=dust scaffold_1038 . repeat_region 4110 4163 . + . description=(CAGA)n scaffold_1038 . repeat_region 4757 5458 . ? . description=dust scaffold_1038 . biological_region 5826 5831 0.999 - . logic_name=eponine scaffold_1038 . biological_region 6452 6453 0.999 + . logic_name=eponine scaffold_1038 . biological_region 6460 6461 0.999 - . logic_name=eponine scaffold_1038 . biological_region 6507 6508 0.999 - . logic_name=eponine scaffold_1038 . biological_region 6816 6818 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1063 1 7004 scaffold_1063 . repeat_region 244 253 . ? . description=dust scaffold_1063 . biological_region 1353 1357 0.999 + . logic_name=eponine scaffold_1063 . biological_region 1985 1990 0.999 + . logic_name=eponine scaffold_1063 . repeat_region 2350 6215 . ? . description=dust scaffold_1063 ensembl protein_coding_gene 6221 7004 . + . ID=Physo109730;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10630001;logic_name=jgi_physo1_1 scaffold_1063 ensembl transcript 6221 7004 . + . ID=Physo109730;Parent=Physo109730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1063 . CDS 6221 6251 . + 0 ID=Physo109730;Parent=Physo109730;rank=1 scaffold_1063 . exon 6221 6251 . + . ID=Physo109730.1;Parent=Physo109730;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1063 . CDS 6373 6947 . + 0 ID=Physo109730;Parent=Physo109730;rank=2 scaffold_1063 . exon 6373 7004 . + . ID=Physo109730.2;Parent=Physo109730;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1063 ensembl protein_coding_gene 1133 1510 . + . ID=Physo145334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10630001;logic_name=jgi_physo1_1 scaffold_1063 ensembl transcript 1133 1510 . + . ID=Physo145334;Parent=Physo145334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1063 . CDS 1133 1510 . + 0 ID=Physo145334;Parent=Physo145334;rank=1 scaffold_1063 . exon 1133 1510 . + . ID=Physo145334.1;Parent=Physo145334;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1049 1 7012 scaffold_1049 . repeat_region 618 661 . ? . description=trf scaffold_1049 . biological_region 1180 1180 0.999 - . logic_name=eponine scaffold_1049 . repeat_region 1856 3019 . ? . description=dust scaffold_1049 . repeat_region 4169 5430 . ? . description=dust scaffold_1049 . repeat_region 5643 5796 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1047 1 7021 scaffold_1047 . repeat_region 860 5768 . ? . description=dust scaffold_1047 . repeat_region 6786 6799 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1044 1 7053 scaffold_1044 . biological_region 544 545 0.999 + . logic_name=eponine scaffold_1044 . repeat_region 1719 1729 . ? . description=dust scaffold_1044 . biological_region 1759 1759 0.999 - . logic_name=eponine scaffold_1044 . biological_region 1961 1966 0.999 + . logic_name=eponine scaffold_1044 . biological_region 5838 5840 0.999 + . logic_name=eponine scaffold_1044 . biological_region 6109 6110 0.999 + . logic_name=eponine scaffold_1044 . biological_region 6127 6130 0.999 - . logic_name=eponine scaffold_1044 . biological_region 6237 6238 0.999 + . logic_name=eponine scaffold_1044 . repeat_region 6448 6478 . ? . description=trf scaffold_1044 . biological_region 6617 6618 0.999 + . logic_name=eponine scaffold_1044 . biological_region 6683 6686 0.999 + . logic_name=eponine scaffold_1044 . biological_region 6715 6717 0.999 - . logic_name=eponine scaffold_1044 . biological_region 6775 6778 0.999 - . logic_name=eponine scaffold_1044 . biological_region 6798 6804 0.999 + . logic_name=eponine scaffold_1044 . biological_region 6806 6810 0.999 - . logic_name=eponine scaffold_1044 . biological_region 6845 6846 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1045 1 7054 scaffold_1045 . repeat_region 1154 6151 . ? . description=dust scaffold_1045 ensembl protein_coding_gene 57 1035 . - . ID=Physo145325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10450001;logic_name=jgi_physo1_1 scaffold_1045 ensembl transcript 57 1035 . - . ID=Physo145325;Parent=Physo145325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1045 . exon 57 1035 . - . ID=Physo145325.1;Parent=Physo145325;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1045 . CDS 58 1035 . - 0 ID=Physo145325;Parent=Physo145325;rank=1 ##gff-version 3 ##sequence-region scaffold_1041 1 7095 scaffold_1041 . repeat_region 313 463 . ? . description=trf scaffold_1041 . repeat_region 589 641 . ? . description=trf scaffold_1041 . repeat_region 694 1151 . + . description=GypsyPi-1c_I-int scaffold_1041 . repeat_region 1158 5999 . ? . description=dust scaffold_1041 . repeat_region 6275 6437 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_1039 1 7097 scaffold_1039 . repeat_region 1184 6138 . ? . description=dust scaffold_1039 . biological_region 6508 6513 0.999 + . logic_name=eponine scaffold_1039 . biological_region 6531 6534 0.999 - . logic_name=eponine scaffold_1039 . biological_region 6605 6610 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1055 1 7138 scaffold_1055 . repeat_region 1702 1820 . ? . description=dust scaffold_1055 . repeat_region 2939 2952 . ? . description=dust scaffold_1055 . repeat_region 3745 3753 . ? . description=dust scaffold_1055 . repeat_region 3946 3995 . ? . description=dust scaffold_1055 . repeat_region 4586 4594 . ? . description=dust scaffold_1055 . repeat_region 4758 6290 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1037 1 7162 scaffold_1037 . repeat_region 55 74 . ? . description=trf scaffold_1037 . repeat_region 1358 6321 . ? . description=dust scaffold_1037 ensembl protein_coding_gene 379 1225 . + . ID=Physo145324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10370001;logic_name=jgi_physo1_1 scaffold_1037 ensembl transcript 379 1225 . + . ID=Physo145324;Parent=Physo145324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1037 . CDS 379 1138 . + 0 ID=Physo145324;Parent=Physo145324;rank=1 scaffold_1037 . exon 379 1138 . + . ID=Physo145324.1;Parent=Physo145324;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1037 . CDS 1203 1225 . + 0 ID=Physo145324;Parent=Physo145324;rank=2 scaffold_1037 . exon 1203 1225 . + . ID=Physo145324.2;Parent=Physo145324;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1051 1 7216 scaffold_1051 . repeat_region 343 350 . ? . description=dust scaffold_1051 . repeat_region 616 624 . ? . description=dust scaffold_1051 . repeat_region 1218 1267 . ? . description=dust scaffold_1051 . repeat_region 2186 2202 . ? . description=dust scaffold_1051 . repeat_region 2582 2631 . ? . description=dust scaffold_1051 . repeat_region 3813 3970 . ? . description=dust scaffold_1051 . repeat_region 5804 6245 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1043 1 7230 scaffold_1043 . repeat_region 1 1334 . + . description=Polinton-1_PI scaffold_1043 . repeat_region 1336 3101 . ? . description=dust scaffold_1043 . repeat_region 3102 4568 . + . description=Polinton-1_PI scaffold_1043 . repeat_region 4570 5715 . ? . description=dust scaffold_1043 . biological_region 6650 6653 0.999 - . logic_name=eponine scaffold_1043 . repeat_region 6852 6893 . ? . description=trf scaffold_1043 . biological_region 6907 6909 0.999 + . logic_name=eponine scaffold_1043 . biological_region 6956 6960 0.999 + . logic_name=eponine scaffold_1043 . biological_region 6977 6980 0.999 - . logic_name=eponine scaffold_1043 . biological_region 7031 7035 0.999 + . logic_name=eponine scaffold_1043 . biological_region 7082 7085 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1030 1 7236 scaffold_1030 . repeat_region 931 6145 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1029 1 7241 scaffold_1029 . repeat_region 952 2526 . ? . description=dust scaffold_1029 . biological_region 2702 2705 0.999 - . logic_name=eponine scaffold_1029 . repeat_region 3605 6386 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1021 1 7272 scaffold_1021 . repeat_region 1489 6408 . ? . description=dust scaffold_1021 ensembl protein_coding_gene 6443 7211 . + . ID=Physo126318;biotype=protein_coding;external_name=estExt_Genewise1.C_10210001;logic_name=jgi_physo1_1 scaffold_1021 ensembl transcript 6443 7211 . + . ID=Physo126318;Parent=Physo126318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1021 . exon 6443 7211 . + . ID=Physo126318.1;Parent=Physo126318;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1021 . CDS 6623 6778 . + 0 ID=Physo126318;Parent=Physo126318;rank=1 scaffold_1021 ensembl protein_coding_gene 50 1087 . - . ID=Physo145323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10210001;logic_name=jgi_physo1_1 scaffold_1021 ensembl transcript 50 1087 . - . ID=Physo145323;Parent=Physo145323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1021 . exon 50 456 . - . ID=Physo145323.2;Parent=Physo145323;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1021 . CDS 52 456 . - 0 ID=Physo145323;Parent=Physo145323;rank=2 scaffold_1021 . CDS 485 1087 . - 0 ID=Physo145323;Parent=Physo145323;rank=1 scaffold_1021 . exon 485 1087 . - . ID=Physo145323.1;Parent=Physo145323;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1020 1 7280 scaffold_1020 . repeat_region 5 1375 . + . description=GypsyPi-1c_I-int scaffold_1020 . repeat_region 1376 6460 . ? . description=dust scaffold_1020 . biological_region 7060 7062 0.999 + . logic_name=eponine scaffold_1020 . biological_region 7171 7176 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1015 1 7292 scaffold_1015 . repeat_region 1215 3160 . ? . description=dust scaffold_1015 . repeat_region 4327 5781 . ? . description=dust scaffold_1015 . biological_region 6022 6024 0.999 + . logic_name=eponine scaffold_1015 ensembl protein_coding_gene 204 3900 . - . ID=Physo145319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10150001;logic_name=jgi_physo1_1 scaffold_1015 ensembl transcript 204 3900 . - . ID=Physo145319;Parent=Physo145319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1015 . exon 204 1177 . - . ID=Physo145319.3;Parent=Physo145319;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_1015 . CDS 361 1177 . - 0 ID=Physo145319;Parent=Physo145319;rank=3 scaffold_1015 . CDS 3425 3444 . - 0 ID=Physo145319;Parent=Physo145319;rank=2 scaffold_1015 . exon 3425 3444 . - . ID=Physo145319.2;Parent=Physo145319;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1015 . CDS 3823 3900 . - 0 ID=Physo145319;Parent=Physo145319;rank=1 scaffold_1015 . exon 3823 3900 . - . ID=Physo145319.1;Parent=Physo145319;constitutive=1;rank=1 scaffold_1015 ensembl protein_coding_gene 5842 6427 . - . ID=Physo145320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10150002;logic_name=jgi_physo1_1 scaffold_1015 ensembl transcript 5842 6427 . - . ID=Physo145320;Parent=Physo145320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1015 . CDS 5842 5889 . - 0 ID=Physo145320;Parent=Physo145320;rank=2 scaffold_1015 . exon 5842 5889 . - . ID=Physo145320.2;Parent=Physo145320;constitutive=1;rank=2 scaffold_1015 . CDS 5936 6427 . - 0 ID=Physo145320;Parent=Physo145320;rank=1 scaffold_1015 . exon 5936 6427 . - . ID=Physo145320.1;Parent=Physo145320;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1012 1 7296 scaffold_1012 . biological_region 1732 1740 0.999 + . logic_name=eponine scaffold_1012 . biological_region 1757 1758 0.999 + . logic_name=eponine scaffold_1012 . repeat_region 2382 2662 . - . description=GypsyPi-1c_I-int scaffold_1012 . repeat_region 2949 5077 . - . description=GypsyPi-1c_I-int scaffold_1012 . repeat_region 5084 5599 . ? . description=dust scaffold_1012 . biological_region 6047 6049 0.999 - . logic_name=eponine scaffold_1012 . repeat_region 7062 7069 . ? . description=dust scaffold_1012 ensembl protein_coding_gene 24 458 . - . ID=Physo126310;biotype=protein_coding;external_name=estExt_Genewise1.C_10120003;logic_name=jgi_physo1_1 scaffold_1012 ensembl transcript 24 458 . - . ID=Physo126310;Parent=Physo126310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1012 . CDS 24 365 . - 0 ID=Physo126310;Parent=Physo126310;rank=1 scaffold_1012 . exon 24 458 . - . ID=Physo126310.1;Parent=Physo126310;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1012 ensembl protein_coding_gene 3021 4989 . - . ID=Physo145317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10120001;logic_name=jgi_physo1_1 scaffold_1012 ensembl transcript 3021 4989 . - . ID=Physo145317;Parent=Physo145317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1012 . CDS 3021 3709 . - 0 ID=Physo145317;Parent=Physo145317;rank=3 scaffold_1012 . exon 3021 3709 . - . ID=Physo145317.3;Parent=Physo145317;constitutive=1;ensembl_phase=1;rank=3 scaffold_1012 . CDS 3730 4210 . - 0 ID=Physo145317;Parent=Physo145317;rank=2 scaffold_1012 . exon 3730 4210 . - . ID=Physo145317.2;Parent=Physo145317;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1012 . CDS 4273 4989 . - 0 ID=Physo145317;Parent=Physo145317;rank=1 scaffold_1012 . exon 4273 4989 . - . ID=Physo145317.1;Parent=Physo145317;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_844 1 7299 scaffold_844 . repeat_region 906 1659 . ? . description=dust scaffold_844 . biological_region 1732 1739 0.999 + . logic_name=eponine scaffold_844 . repeat_region 1762 1787 . ? . description=trf scaffold_844 . repeat_region 1786 1827 . ? . description=trf scaffold_844 . repeat_region 4285 4342 . ? . description=trf scaffold_844 . biological_region 5917 5917 0.999 - . logic_name=eponine scaffold_844 . repeat_region 6330 6379 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1009 1 7305 scaffold_1009 . repeat_region 1643 6427 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1011 1 7306 scaffold_1011 . biological_region 528 534 0.999 + . logic_name=eponine scaffold_1011 . biological_region 549 550 0.999 + . logic_name=eponine scaffold_1011 . biological_region 584 585 0.999 + . logic_name=eponine scaffold_1011 . biological_region 646 651 0.999 - . logic_name=eponine scaffold_1011 . biological_region 665 667 0.999 - . logic_name=eponine scaffold_1011 . biological_region 1195 1201 0.999 + . logic_name=eponine scaffold_1011 . biological_region 1248 1255 0.999 - . logic_name=eponine scaffold_1011 . biological_region 1306 1308 0.999 + . logic_name=eponine scaffold_1011 . biological_region 1314 1316 0.999 - . logic_name=eponine scaffold_1011 . repeat_region 1383 1677 . ? . description=dust scaffold_1011 . repeat_region 2400 3956 . - . description=GypsyPi-1c_I-int scaffold_1011 . biological_region 3255 3257 0.999 + . logic_name=eponine scaffold_1011 . repeat_region 4517 5425 . ? . description=dust scaffold_1011 . biological_region 5696 5698 0.999 - . logic_name=eponine scaffold_1011 ensembl protein_coding_gene 263 664 . + . ID=Physo145315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10110001;logic_name=jgi_physo1_1 scaffold_1011 ensembl transcript 263 664 . + . ID=Physo145315;Parent=Physo145315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1011 . CDS 263 664 . + 0 ID=Physo145315;Parent=Physo145315;rank=1 scaffold_1011 . exon 263 664 . + . ID=Physo145315.1;Parent=Physo145315;constitutive=1;rank=1 scaffold_1011 ensembl protein_coding_gene 2377 3363 . - . ID=Physo145316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10110002;logic_name=jgi_physo1_1 scaffold_1011 ensembl transcript 2377 3363 . - . ID=Physo145316;Parent=Physo145316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1011 . CDS 2377 3363 . - 0 ID=Physo145316;Parent=Physo145316;rank=1 scaffold_1011 . exon 2377 3363 . - . ID=Physo145316.1;Parent=Physo145316;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_1004 1 7327 scaffold_1004 . repeat_region 1177 1186 . ? . description=dust scaffold_1004 . repeat_region 2128 2571 . ? . description=dust scaffold_1004 . biological_region 3230 3233 0.999 + . logic_name=eponine scaffold_1004 . biological_region 3252 3253 0.999 + . logic_name=eponine scaffold_1004 . repeat_region 3644 3664 . ? . description=trf scaffold_1004 . repeat_region 4033 6501 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1017 1 7327 scaffold_1017 . repeat_region 1129 5720 . ? . description=dust scaffold_1017 . biological_region 5862 5863 0.999 - . logic_name=eponine scaffold_1017 . biological_region 6357 6362 0.999 - . logic_name=eponine scaffold_1017 . biological_region 6983 6984 0.999 + . logic_name=eponine scaffold_1017 . biological_region 6991 6992 0.999 - . logic_name=eponine scaffold_1017 . biological_region 7038 7039 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_996 1 7334 scaffold_996 . biological_region 420 428 0.999 + . logic_name=eponine scaffold_996 . biological_region 442 446 0.999 + . logic_name=eponine scaffold_996 . repeat_region 1018 2588 . ? . description=dust scaffold_996 . repeat_region 3591 6641 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_997 1 7334 scaffold_997 . repeat_region 1 776 . - . description=Polinton-1_PI scaffold_997 . repeat_region 777 3878 . ? . description=dust scaffold_997 . repeat_region 3882 4323 . - . description=Polinton-1_PI scaffold_997 . repeat_region 4805 6057 . ? . description=dust scaffold_997 . repeat_region 6768 7307 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_994 1 7339 scaffold_994 . repeat_region 887 6099 . ? . description=dust scaffold_994 . biological_region 6158 6162 0.999 + . logic_name=eponine scaffold_994 . biological_region 6186 6187 0.999 + . logic_name=eponine scaffold_994 . biological_region 6220 6225 0.999 - . logic_name=eponine scaffold_994 ensembl protein_coding_gene 6105 6604 . + . ID=Physo126297;biotype=protein_coding;external_name=estExt_Genewise1.C_9940001;logic_name=jgi_physo1_1 scaffold_994 ensembl transcript 6105 6604 . + . ID=Physo126297;Parent=Physo126297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_994 . exon 6105 6604 . + . ID=Physo126297.1;Parent=Physo126297;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_994 . CDS 6153 6461 . + 0 ID=Physo126297;Parent=Physo126297;rank=1 scaffold_994 ensembl protein_coding_gene 46 648 . - . ID=Physo145310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9940001;logic_name=jgi_physo1_1 scaffold_994 ensembl transcript 46 648 . - . ID=Physo145310;Parent=Physo145310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_994 . CDS 46 648 . - 0 ID=Physo145310;Parent=Physo145310;rank=1 scaffold_994 . exon 46 648 . - . ID=Physo145310.1;Parent=Physo145310;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_991 1 7344 scaffold_991 . repeat_region 970 980 . ? . description=dust scaffold_991 . biological_region 4305 4309 0.999 - . logic_name=eponine scaffold_991 . repeat_region 6935 6946 . ? . description=dust scaffold_991 ensembl protein_coding_gene 4108 5142 . + . ID=Physo145308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9910001;logic_name=jgi_physo1_1 scaffold_991 ensembl transcript 4108 5142 . + . ID=Physo145308;Parent=Physo145308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_991 . CDS 4108 4151 . + 0 ID=Physo145308;Parent=Physo145308;rank=1 scaffold_991 . exon 4108 4151 . + . ID=Physo145308.1;Parent=Physo145308;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_991 . CDS 4209 4440 . + 0 ID=Physo145308;Parent=Physo145308;rank=2 scaffold_991 . exon 4209 4440 . + . ID=Physo145308.2;Parent=Physo145308;constitutive=1;ensembl_phase=2;rank=2 scaffold_991 . CDS 4494 4632 . + 0 ID=Physo145308;Parent=Physo145308;rank=3 scaffold_991 . exon 4494 4632 . + . ID=Physo145308.3;Parent=Physo145308;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_991 . CDS 4694 5142 . + 0 ID=Physo145308;Parent=Physo145308;rank=4 scaffold_991 . exon 4694 5142 . + . ID=Physo145308.4;Parent=Physo145308;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_992 1 7346 scaffold_992 . repeat_region 1493 6536 . ? . description=dust scaffold_992 ensembl protein_coding_gene 1 748 . - . ID=Physo126295;biotype=protein_coding;external_name=estExt_Genewise1.C_9920002;logic_name=jgi_physo1_1 scaffold_992 ensembl transcript 1 748 . - . ID=Physo126295;Parent=Physo126295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_992 . exon 1 748 . - . ID=Physo126295.1;Parent=Physo126295;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_992 . CDS 2 742 . - 0 ID=Physo126295;Parent=Physo126295;rank=1 ##gff-version 3 ##sequence-region scaffold_1007 1 7370 scaffold_1007 . repeat_region 1205 1215 . ? . description=dust scaffold_1007 . repeat_region 1347 2997 . ? . description=dust scaffold_1007 . repeat_region 3742 3791 . ? . description=dust scaffold_1007 . repeat_region 4146 4153 . ? . description=dust scaffold_1007 . repeat_region 5474 5910 . ? . description=dust scaffold_1007 . repeat_region 6598 6606 . ? . description=dust scaffold_1007 . repeat_region 6937 6950 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_1008 1 7371 scaffold_1008 . repeat_region 1867 1916 . ? . description=dust scaffold_1008 . biological_region 2009 2012 0.999 + . logic_name=eponine scaffold_1008 . biological_region 2204 2210 0.999 + . logic_name=eponine scaffold_1008 . repeat_region 2646 3085 . - . description=GypsyPi-1c_I-int scaffold_1008 . repeat_region 3123 3959 . ? . description=dust scaffold_1008 . repeat_region 3962 5719 . - . description=GypsyPi-1c_I-int scaffold_1008 . repeat_region 5720 6455 . ? . description=dust scaffold_1008 . repeat_region 6488 7369 . - . description=GypsyPi-1c_I-int scaffold_1008 . repeat_region 6742 6824 . ? . description=trf scaffold_1008 . repeat_region 6829 6995 . ? . description=trf scaffold_1008 ensembl protein_coding_gene 4590 5621 . - . ID=Physo109729;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10080001;logic_name=jgi_physo1_1 scaffold_1008 ensembl transcript 4590 5621 . - . ID=Physo109729;Parent=Physo109729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1008 . CDS 4590 5621 . - 0 ID=Physo109729;Parent=Physo109729;rank=1 scaffold_1008 . exon 4590 5621 . - . ID=Physo109729.1;Parent=Physo109729;constitutive=1;rank=1 scaffold_1008 ensembl protein_coding_gene 3976 4374 . - . ID=Physo126304;biotype=protein_coding;external_name=estExt_Genewise1.C_10080001;logic_name=jgi_physo1_1 scaffold_1008 ensembl transcript 3976 4374 . - . ID=Physo126304;Parent=Physo126304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1008 . CDS 3976 4329 . - 0 ID=Physo126304;Parent=Physo126304;rank=1 scaffold_1008 . exon 3976 4374 . - . ID=Physo126304.1;Parent=Physo126304;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1008 ensembl protein_coding_gene 1 373 . + . ID=Physo145312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10080001;logic_name=jgi_physo1_1 scaffold_1008 ensembl transcript 1 373 . + . ID=Physo145312;Parent=Physo145312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1008 . exon 1 373 . + . ID=Physo145312.1;Parent=Physo145312;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1008 . CDS 3 371 . + 0 ID=Physo145312;Parent=Physo145312;rank=1 scaffold_1008 ensembl protein_coding_gene 1942 2909 . + . ID=Physo145313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10080002;logic_name=jgi_physo1_1 scaffold_1008 ensembl transcript 1942 2909 . + . ID=Physo145313;Parent=Physo145313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1008 . CDS 1942 2521 . + 0 ID=Physo145313;Parent=Physo145313;rank=1 scaffold_1008 . exon 1942 2521 . + . ID=Physo145313.1;Parent=Physo145313;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1008 . CDS 2572 2909 . + 0 ID=Physo145313;Parent=Physo145313;rank=2 scaffold_1008 . exon 2572 2909 . + . ID=Physo145313.2;Parent=Physo145313;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_1014 1 7376 scaffold_1014 . repeat_region 1834 6383 . ? . description=dust scaffold_1014 ensembl protein_coding_gene 6582 7376 . - . ID=Physo145318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10140001;logic_name=jgi_physo1_1 scaffold_1014 ensembl transcript 6582 7376 . - . ID=Physo145318;Parent=Physo145318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1014 . exon 6582 7376 . - . ID=Physo145318.1;Parent=Physo145318;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1014 . CDS 6778 7284 . - 0 ID=Physo145318;Parent=Physo145318;rank=1 ##gff-version 3 ##sequence-region scaffold_985 1 7381 scaffold_985 . repeat_region 1865 6157 . ? . description=dust scaffold_985 . repeat_region 6738 6803 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_979 1 7401 scaffold_979 . repeat_region 859 5800 . ? . description=dust scaffold_979 ensembl protein_coding_gene 295 820 . + . ID=Physo109727;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_9790001;logic_name=jgi_physo1_1 scaffold_979 ensembl transcript 295 820 . + . ID=Physo109727;Parent=Physo109727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_979 . CDS 295 813 . + 0 ID=Physo109727;Parent=Physo109727;rank=1 scaffold_979 . exon 295 820 . + . ID=Physo109727.1;Parent=Physo109727;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_979 ensembl protein_coding_gene 6254 6771 . - . ID=Physo145303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9790002;logic_name=jgi_physo1_1 scaffold_979 ensembl transcript 6254 6771 . - . ID=Physo145303;Parent=Physo145303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_979 . CDS 6254 6284 . - 0 ID=Physo145303;Parent=Physo145303;rank=2 scaffold_979 . exon 6254 6284 . - . ID=Physo145303.2;Parent=Physo145303;constitutive=1;ensembl_phase=2;rank=2 scaffold_979 . CDS 6314 6771 . - 0 ID=Physo145303;Parent=Physo145303;rank=1 scaffold_979 . exon 6314 6771 . - . ID=Physo145303.1;Parent=Physo145303;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_978 1 7403 scaffold_978 . repeat_region 1091 6472 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_977 1 7406 scaffold_977 . repeat_region 1126 6337 . ? . description=dust scaffold_977 . repeat_region 6957 7012 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_975 1 7409 scaffold_975 . biological_region 593 598 0.999 + . logic_name=eponine scaffold_975 . repeat_region 1366 2876 . ? . description=dust scaffold_975 . repeat_region 2883 2906 . ? . description=trf scaffold_975 . biological_region 3319 3320 0.999 + . logic_name=eponine scaffold_975 . repeat_region 4237 6474 . ? . description=dust scaffold_975 ensembl protein_coding_gene 3214 3619 . + . ID=Physo145301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9750001;logic_name=jgi_physo1_1 scaffold_975 ensembl transcript 3214 3619 . + . ID=Physo145301;Parent=Physo145301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_975 . CDS 3214 3420 . + 0 ID=Physo145301;Parent=Physo145301;rank=1 scaffold_975 . exon 3214 3420 . + . ID=Physo145301.1;Parent=Physo145301;constitutive=1;rank=1 scaffold_975 . CDS 3473 3619 . + 0 ID=Physo145301;Parent=Physo145301;rank=2 scaffold_975 . exon 3473 3619 . + . ID=Physo145301.2;Parent=Physo145301;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_971 1 7414 scaffold_971 . repeat_region 788 6161 . ? . description=dust scaffold_971 . repeat_region 7017 7131 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_973 1 7417 scaffold_973 . biological_region 40 45 0.999 + . logic_name=eponine scaffold_973 . biological_region 85 88 0.999 + . logic_name=eponine scaffold_973 . biological_region 127 129 0.999 + . logic_name=eponine scaffold_973 . biological_region 163 168 0.999 - . logic_name=eponine scaffold_973 . biological_region 201 204 0.999 + . logic_name=eponine scaffold_973 . biological_region 239 243 0.999 - . logic_name=eponine scaffold_973 . repeat_region 1089 1098 . ? . description=dust scaffold_973 . repeat_region 1340 6540 . ? . description=dust scaffold_973 . biological_region 6999 7003 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_970 1 7418 scaffold_970 . repeat_region 753 773 . ? . description=trf scaffold_970 . repeat_region 1000 6362 . ? . description=dust scaffold_970 . biological_region 6885 6887 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_993 1 7422 scaffold_993 . repeat_region 706 5671 . ? . description=dust scaffold_993 . biological_region 7050 7050 0.999 + . logic_name=eponine scaffold_993 . biological_region 7072 7078 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_987 1 7423 scaffold_987 . repeat_region 414 421 . ? . description=dust scaffold_987 . repeat_region 1003 2884 . ? . description=dust scaffold_987 . biological_region 3486 3487 0.999 + . logic_name=eponine scaffold_987 . repeat_region 4565 5734 . ? . description=dust scaffold_987 . biological_region 7125 7126 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_1027 1 7427 scaffold_1027 . repeat_region 901 6224 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_969 1 7429 scaffold_969 . repeat_region 1102 5502 . ? . description=dust scaffold_969 . repeat_region 5503 6053 . + . description=GypsyPi-1c_I-int scaffold_969 . biological_region 6216 6220 0.999 - . logic_name=eponine scaffold_969 . repeat_region 6330 7129 . + . description=GypsyPi-1c_I-int scaffold_969 . biological_region 6539 6540 0.999 + . logic_name=eponine scaffold_969 . biological_region 6669 6671 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_965 1 7433 scaffold_965 . repeat_region 1149 1174 . ? . description=trf scaffold_965 . repeat_region 2730 6351 . ? . description=dust scaffold_965 . repeat_region 6352 6371 . ? . description=trf scaffold_965 . biological_region 6501 6504 0.999 - . logic_name=eponine scaffold_965 . biological_region 7143 7147 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_976 1 7435 scaffold_976 . biological_region 70 70 0.999 + . logic_name=eponine scaffold_976 . biological_region 262 266 0.999 - . logic_name=eponine scaffold_976 . repeat_region 847 897 . ? . description=trf scaffold_976 . repeat_region 917 6301 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_966 1 7438 scaffold_966 . biological_region 610 614 0.999 + . logic_name=eponine scaffold_966 . biological_region 1940 1942 0.999 + . logic_name=eponine scaffold_966 . repeat_region 2636 2661 . ? . description=trf scaffold_966 . repeat_region 3514 3554 . ? . description=trf scaffold_966 . biological_region 3781 3782 0.999 - . logic_name=eponine scaffold_966 ensembl protein_coding_gene 1114 1565 . - . ID=Physo126277;biotype=protein_coding;external_name=estExt_Genewise1.C_9660001;logic_name=jgi_physo1_1 scaffold_966 ensembl transcript 1114 1565 . - . ID=Physo126277;Parent=Physo126277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_966 . CDS 1114 1251 . - 0 ID=Physo126277;Parent=Physo126277;rank=2 scaffold_966 . exon 1114 1251 . - . ID=Physo126277.2;Parent=Physo126277;constitutive=1;rank=2 scaffold_966 . CDS 1284 1325 . - 0 ID=Physo126277;Parent=Physo126277;rank=1 scaffold_966 . exon 1284 1565 . - . ID=Physo126277.1;Parent=Physo126277;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_961 1 7443 scaffold_961 . repeat_region 1280 6585 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_960 1 7446 scaffold_960 . repeat_region 982 6291 . ? . description=dust scaffold_960 ensembl protein_coding_gene 6390 7415 . + . ID=Physo145300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9600001;logic_name=jgi_physo1_1 scaffold_960 ensembl transcript 6390 7415 . + . ID=Physo145300;Parent=Physo145300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_960 . exon 6390 6428 . + . ID=Physo145300.1;Parent=Physo145300;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_960 . CDS 6505 7413 . + 0 ID=Physo145300;Parent=Physo145300;rank=1 scaffold_960 . exon 6505 7415 . + . ID=Physo145300.2;Parent=Physo145300;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_959 1 7447 scaffold_959 . repeat_region 47 92 . ? . description=dust scaffold_959 . biological_region 1172 1172 0.999 + . logic_name=eponine scaffold_959 . repeat_region 1268 6387 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_968 1 7448 scaffold_968 . repeat_region 776 800 . ? . description=dust scaffold_968 . repeat_region 1210 6620 . ? . description=dust scaffold_968 . biological_region 7006 7012 0.999 + . logic_name=eponine scaffold_968 . biological_region 7067 7071 0.999 + . logic_name=eponine scaffold_968 . biological_region 7082 7083 0.999 - . logic_name=eponine scaffold_968 . biological_region 7146 7148 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_962 1 7455 scaffold_962 . biological_region 495 497 0.999 - . logic_name=eponine scaffold_962 . biological_region 586 593 0.999 + . logic_name=eponine scaffold_962 . biological_region 616 618 0.999 + . logic_name=eponine scaffold_962 . repeat_region 1546 6632 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_983 1 7456 scaffold_983 . repeat_region 297 343 . ? . description=dust scaffold_983 . repeat_region 319 356 . ? . description=trf scaffold_983 . repeat_region 571 594 . ? . description=trf scaffold_983 . repeat_region 1065 3371 . ? . description=dust scaffold_983 . repeat_region 3378 4054 . - . description=GypsyPi-1c_I-int scaffold_983 . biological_region 4128 4133 0.999 + . logic_name=eponine scaffold_983 . repeat_region 4137 4178 . ? . description=trf scaffold_983 . biological_region 4146 4151 0.999 - . logic_name=eponine scaffold_983 . biological_region 4230 4236 0.999 + . logic_name=eponine scaffold_983 . biological_region 4238 4240 0.999 - . logic_name=eponine scaffold_983 . biological_region 4268 4269 0.999 - . logic_name=eponine scaffold_983 . biological_region 4288 4289 0.999 - . logic_name=eponine scaffold_983 . biological_region 4314 4317 0.999 - . logic_name=eponine scaffold_983 . repeat_region 4321 4369 . ? . description=trf scaffold_983 . biological_region 4666 4668 0.999 - . logic_name=eponine scaffold_983 . repeat_region 4719 6461 . ? . description=dust scaffold_983 ensembl protein_coding_gene 3374 4045 . - . ID=Physo126293;biotype=protein_coding;external_name=estExt_Genewise1.C_9830001;logic_name=jgi_physo1_1 scaffold_983 ensembl transcript 3374 4045 . - . ID=Physo126293;Parent=Physo126293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_983 . CDS 3374 3889 . - 0 ID=Physo126293;Parent=Physo126293;rank=1 scaffold_983 . exon 3374 4045 . - . ID=Physo126293.1;Parent=Physo126293;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_958 1 7463 scaffold_958 . biological_region 1072 1073 0.999 + . logic_name=eponine scaffold_958 . repeat_region 1163 6320 . ? . description=dust scaffold_958 . repeat_region 6340 6656 . - . description=GypsyPi-1c_I-int scaffold_958 . biological_region 6541 6542 0.999 + . logic_name=eponine scaffold_958 ensembl protein_coding_gene 6380 6652 . - . ID=Physo126276;biotype=protein_coding;external_name=estExt_Genewise1.C_9580001;logic_name=jgi_physo1_1 scaffold_958 ensembl transcript 6380 6652 . - . ID=Physo126276;Parent=Physo126276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_958 . CDS 6380 6586 . - 0 ID=Physo126276;Parent=Physo126276;rank=1 scaffold_958 . exon 6380 6652 . - . ID=Physo126276.1;Parent=Physo126276;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_914 1 7471 scaffold_914 . repeat_region 184 225 . ? . description=trf scaffold_914 . repeat_region 2121 3143 . ? . description=dust scaffold_914 . repeat_region 3145 5136 . + . description=GypsyPi-1c_I-int scaffold_914 . biological_region 4230 4232 0.999 - . logic_name=eponine scaffold_914 . repeat_region 5259 5308 . ? . description=dust scaffold_914 . repeat_region 5259 5308 . ? . description=trf scaffold_914 . biological_region 5396 5396 0.999 + . logic_name=eponine scaffold_914 . repeat_region 5468 6424 . ? . description=dust scaffold_914 . biological_region 6835 6837 0.999 - . logic_name=eponine scaffold_914 . biological_region 7383 7390 0.999 + . logic_name=eponine scaffold_914 . biological_region 7386 7386 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_956 1 7475 scaffold_956 . repeat_region 804 1870 . ? . description=dust scaffold_956 . repeat_region 4917 5418 . ? . description=dust scaffold_956 . biological_region 5661 5663 0.999 + . logic_name=eponine scaffold_956 . biological_region 5742 5747 0.999 + . logic_name=eponine scaffold_956 . biological_region 5758 5765 0.999 + . logic_name=eponine scaffold_956 . biological_region 5763 5766 0.999 - . logic_name=eponine scaffold_956 . biological_region 5817 5821 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_957 1 7478 scaffold_957 . repeat_region 2305 2368 . ? . description=dust scaffold_957 . repeat_region 2481 2488 . ? . description=dust scaffold_957 . biological_region 2818 2820 0.999 + . logic_name=eponine scaffold_957 . biological_region 2828 2829 0.999 + . logic_name=eponine scaffold_957 . biological_region 2981 2983 0.999 - . logic_name=eponine scaffold_957 . biological_region 3328 3334 0.999 + . logic_name=eponine scaffold_957 . biological_region 4191 4193 0.999 - . logic_name=eponine scaffold_957 . repeat_region 4718 4743 . ? . description=trf scaffold_957 . repeat_region 4851 6031 . ? . description=dust scaffold_957 . biological_region 6145 6150 0.999 - . logic_name=eponine scaffold_957 . biological_region 6310 6314 0.999 - . logic_name=eponine scaffold_957 . repeat_region 6977 6999 . ? . description=trf scaffold_957 . biological_region 7204 7206 0.999 - . logic_name=eponine scaffold_957 ensembl protein_coding_gene 764 2888 . - . ID=Physo109726;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_9570001;logic_name=jgi_physo1_1 scaffold_957 ensembl transcript 764 2888 . - . ID=Physo109726;Parent=Physo109726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_957 . CDS 764 1314 . - 0 ID=Physo109726;Parent=Physo109726;rank=6 scaffold_957 . exon 764 1314 . - . ID=Physo109726.6;Parent=Physo109726;constitutive=1;ensembl_phase=1;rank=6 scaffold_957 . CDS 1368 1453 . - 0 ID=Physo109726;Parent=Physo109726;rank=5 scaffold_957 . exon 1368 1453 . - . ID=Physo109726.5;Parent=Physo109726;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_957 . CDS 1592 2292 . - 0 ID=Physo109726;Parent=Physo109726;rank=4 scaffold_957 . exon 1592 2292 . - . ID=Physo109726.4;Parent=Physo109726;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_957 . CDS 2383 2476 . - 0 ID=Physo109726;Parent=Physo109726;rank=3 scaffold_957 . exon 2383 2476 . - . ID=Physo109726.3;Parent=Physo109726;constitutive=1;ensembl_phase=2;rank=3 scaffold_957 . CDS 2560 2701 . - 0 ID=Physo109726;Parent=Physo109726;rank=2 scaffold_957 . exon 2560 2701 . - . ID=Physo109726.2;Parent=Physo109726;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_957 . CDS 2810 2888 . - 0 ID=Physo109726;Parent=Physo109726;rank=1 scaffold_957 . exon 2810 2888 . - . ID=Physo109726.1;Parent=Physo109726;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_957 ensembl protein_coding_gene 6917 7478 . + . ID=Physo145299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9570002;logic_name=jgi_physo1_1 scaffold_957 ensembl transcript 6917 7478 . + . ID=Physo145299;Parent=Physo145299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_957 . exon 6917 7478 . + . ID=Physo145299.1;Parent=Physo145299;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_957 . CDS 7022 7477 . + 0 ID=Physo145299;Parent=Physo145299;rank=1 ##gff-version 3 ##sequence-region scaffold_982 1 7485 scaffold_982 . repeat_region 377 450 . ? . description=trf scaffold_982 . biological_region 1424 1430 0.999 + . logic_name=eponine scaffold_982 . biological_region 1494 1502 0.999 - . logic_name=eponine scaffold_982 . biological_region 1517 1525 0.999 - . logic_name=eponine scaffold_982 . biological_region 1543 1547 0.999 - . logic_name=eponine scaffold_982 . biological_region 1629 1637 0.999 - . logic_name=eponine scaffold_982 . repeat_region 1735 2888 . ? . description=dust scaffold_982 . repeat_region 3322 4193 . - . description=GypsyPi-1c_I-int scaffold_982 . repeat_region 4196 6152 . ? . description=dust scaffold_982 ensembl protein_coding_gene 3955 4191 . - . ID=Physo126289;biotype=protein_coding;external_name=estExt_Genewise1.C_9820002;logic_name=jgi_physo1_1 scaffold_982 ensembl transcript 3955 4191 . - . ID=Physo126289;Parent=Physo126289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_982 . CDS 3955 4083 . - 0 ID=Physo126289;Parent=Physo126289;rank=1 scaffold_982 . exon 3955 4191 . - . ID=Physo126289.1;Parent=Physo126289;constitutive=1;ensembl_phase=-1;rank=1 scaffold_982 ensembl protein_coding_gene 6276 7270 . - . ID=Physo145307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9820001;logic_name=jgi_physo1_1 scaffold_982 ensembl transcript 6276 7270 . - . ID=Physo145307;Parent=Physo145307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_982 . CDS 6276 6879 . - 0 ID=Physo145307;Parent=Physo145307;rank=2 scaffold_982 . exon 6276 6879 . - . ID=Physo145307.2;Parent=Physo145307;constitutive=1;ensembl_phase=2;rank=2 scaffold_982 . CDS 6918 7270 . - 0 ID=Physo145307;Parent=Physo145307;rank=1 scaffold_982 . exon 6918 7270 . - . ID=Physo145307.1;Parent=Physo145307;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1042 1 7486 scaffold_1042 . repeat_region 616 807 . ? . description=trf scaffold_1042 . repeat_region 1251 2434 . ? . description=dust scaffold_1042 . repeat_region 3656 6555 . ? . description=dust scaffold_1042 . biological_region 6692 6694 0.999 + . logic_name=eponine scaffold_1042 . biological_region 6837 6843 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_954 1 7489 scaffold_954 . repeat_region 877 901 . ? . description=trf scaffold_954 . repeat_region 946 6279 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_955 1 7489 scaffold_955 . biological_region 340 345 0.999 - . logic_name=eponine scaffold_955 . repeat_region 482 793 . + . description=GypsyPi-1c_I-int scaffold_955 . biological_region 539 540 0.999 - . logic_name=eponine scaffold_955 . repeat_region 915 1097 . + . description=GypsyPi-1c_LTR scaffold_955 . repeat_region 1277 1285 . ? . description=dust scaffold_955 . repeat_region 3156 3163 . ? . description=dust scaffold_955 . repeat_region 3474 3484 . ? . description=dust scaffold_955 . repeat_region 6357 6366 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_953 1 7493 scaffold_953 . repeat_region 1029 6469 . ? . description=dust scaffold_953 ensembl protein_coding_gene 6508 7491 . - . ID=Physo126267;biotype=protein_coding;external_name=estExt_Genewise1.C_9530001;logic_name=jgi_physo1_1 scaffold_953 ensembl transcript 6508 7491 . - . ID=Physo126267;Parent=Physo126267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_953 . CDS 6508 7452 . - 0 ID=Physo126267;Parent=Physo126267;rank=1 scaffold_953 . exon 6508 7491 . - . ID=Physo126267.1;Parent=Physo126267;constitutive=1;ensembl_phase=-1;rank=1 scaffold_953 ensembl protein_coding_gene 29 886 . + . ID=Physo126269;biotype=protein_coding;external_name=estExt_Genewise1.C_9530003;logic_name=jgi_physo1_1 scaffold_953 ensembl transcript 29 886 . + . ID=Physo126269;Parent=Physo126269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_953 . exon 29 886 . + . ID=Physo126269.1;Parent=Physo126269;constitutive=1;ensembl_phase=-1;rank=1 scaffold_953 . CDS 98 886 . + 0 ID=Physo126269;Parent=Physo126269;rank=1 ##gff-version 3 ##sequence-region scaffold_951 1 7498 scaffold_951 . biological_region 256 256 0.999 - . logic_name=eponine scaffold_951 . repeat_region 654 692 . ? . description=trf scaffold_951 . repeat_region 1045 6204 . ? . description=dust scaffold_951 . repeat_region 6979 7015 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_967 1 7498 scaffold_967 . repeat_region 805 6276 . ? . description=dust scaffold_967 . repeat_region 6299 7063 . + . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_950 1 7500 scaffold_950 . repeat_region 384 410 . ? . description=trf scaffold_950 . biological_region 509 512 0.999 + . logic_name=eponine scaffold_950 . biological_region 516 519 0.999 + . logic_name=eponine scaffold_950 . repeat_region 1073 6442 . ? . description=dust scaffold_950 ensembl pseudogene 6443 6983 . - . ID=Physo126266;biotype=pseudogene;external_name=estExt_Genewise1.C_9500001;logic_name=jgi_physo1_1 scaffold_950 ensembl pseudogene 6443 6983 . - . ID=Physo126266;Parent=Physo126266;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_950 . exon 6443 6983 . - . ID=Physo126266.1;Parent=Physo126266;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_949 1 7501 scaffold_949 . biological_region 255 256 0.999 - . logic_name=eponine scaffold_949 . biological_region 307 311 0.999 + . logic_name=eponine scaffold_949 . biological_region 317 319 0.999 - . logic_name=eponine scaffold_949 . biological_region 556 560 0.999 - . logic_name=eponine scaffold_949 . repeat_region 1276 6311 . ? . description=dust scaffold_949 . repeat_region 7048 7055 . ? . description=dust scaffold_949 . biological_region 7088 7094 0.999 + . logic_name=eponine scaffold_949 . repeat_region 7131 7200 . ? . description=trf scaffold_949 . repeat_region 7296 7361 . ? . description=trf scaffold_949 . biological_region 7304 7317 0.999 + . logic_name=eponine scaffold_949 . biological_region 7341 7341 0.999 + . logic_name=eponine scaffold_949 . biological_region 7344 7346 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_948 1 7503 scaffold_948 . repeat_region 1861 6312 . ? . description=dust scaffold_948 ensembl protein_coding_gene 6453 7433 . + . ID=Physo145295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9480001;logic_name=jgi_physo1_1 scaffold_948 ensembl transcript 6453 7433 . + . ID=Physo145295;Parent=Physo145295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_948 . CDS 6453 6475 . + 0 ID=Physo145295;Parent=Physo145295;rank=1 scaffold_948 . exon 6453 6475 . + . ID=Physo145295.1;Parent=Physo145295;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_948 . CDS 6503 6862 . + 0 ID=Physo145295;Parent=Physo145295;rank=2 scaffold_948 . exon 6503 6862 . + . ID=Physo145295.2;Parent=Physo145295;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_948 . CDS 7223 7433 . + 0 ID=Physo145295;Parent=Physo145295;rank=3 scaffold_948 . exon 7223 7433 . + . ID=Physo145295.3;Parent=Physo145295;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_952 1 7503 scaffold_952 . biological_region 820 823 0.999 - . logic_name=eponine scaffold_952 . repeat_region 869 6245 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_947 1 7507 scaffold_947 . repeat_region 166 174 . ? . description=dust scaffold_947 . repeat_region 272 283 . ? . description=dust scaffold_947 . repeat_region 1437 6442 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_946 1 7517 scaffold_946 . repeat_region 1 178 . - . description=Polinton-1_PI scaffold_946 . repeat_region 153 273 . - . description=Polinton-1_PI scaffold_946 . repeat_region 332 367 . ? . description=trf scaffold_946 . repeat_region 1527 6463 . ? . description=dust scaffold_946 . repeat_region 6465 7506 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_945 1 7524 scaffold_945 . repeat_region 574 588 . ? . description=dust scaffold_945 . repeat_region 597 659 . ? . description=trf scaffold_945 . repeat_region 1049 1097 . ? . description=trf scaffold_945 . repeat_region 1570 6090 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_944 1 7525 scaffold_944 . repeat_region 1058 6030 . ? . description=dust scaffold_944 ensembl protein_coding_gene 22 207 . + . ID=Physo126263;biotype=protein_coding;external_name=estExt_Genewise1.C_9440001;logic_name=jgi_physo1_1 scaffold_944 ensembl transcript 22 207 . + . ID=Physo126263;Parent=Physo126263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_944 . exon 22 207 . + . ID=Physo126263.1;Parent=Physo126263;constitutive=1;ensembl_phase=-1;rank=1 scaffold_944 . CDS 55 207 . + 0 ID=Physo126263;Parent=Physo126263;rank=1 ##gff-version 3 ##sequence-region scaffold_939 1 7533 scaffold_939 . biological_region 686 691 0.999 + . logic_name=eponine scaffold_939 . repeat_region 1082 1089 . ? . description=dust scaffold_939 . repeat_region 1309 6430 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_988 1 7533 scaffold_988 . repeat_region 1149 6578 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_940 1 7535 scaffold_940 . biological_region 374 379 0.999 - . logic_name=eponine scaffold_940 . repeat_region 1418 2214 . ? . description=dust scaffold_940 . repeat_region 2746 2758 . ? . description=dust scaffold_940 . repeat_region 2795 2803 . ? . description=dust scaffold_940 . repeat_region 4181 5263 . ? . description=dust scaffold_940 . biological_region 6358 6359 0.999 - . logic_name=eponine scaffold_940 . biological_region 6931 6932 0.999 - . logic_name=eponine scaffold_940 ensembl protein_coding_gene 2858 3381 . - . ID=Physo145293;biotype=protein_coding;description=PsAvh251PsAvh255 [Source:UniProtKB/TrEMBL%3BAcc:E0W5B7];external_name=estExt_fgenesh1_pg.C_9400001;logic_name=jgi_physo1_1 scaffold_940 ensembl transcript 2858 3381 . - . ID=Physo145293;Parent=Physo145293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_940 . CDS 2858 3303 . - 0 ID=Physo145293;Parent=Physo145293;rank=2 scaffold_940 . exon 2858 3303 . - . ID=Physo145293.2;Parent=Physo145293;constitutive=1;ensembl_phase=1;rank=2 scaffold_940 . CDS 3330 3381 . - 0 ID=Physo145293;Parent=Physo145293;rank=1 scaffold_940 . exon 3330 3381 . - . ID=Physo145293.1;Parent=Physo145293;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_940 ensembl protein_coding_gene 5677 7494 . - . ID=Physo145294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9400002;logic_name=jgi_physo1_1 scaffold_940 ensembl transcript 5677 7494 . - . ID=Physo145294;Parent=Physo145294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_940 . CDS 5677 7338 . - 0 ID=Physo145294;Parent=Physo145294;rank=1 scaffold_940 . exon 5677 7494 . - . ID=Physo145294.1;Parent=Physo145294;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_937 1 7538 scaffold_937 . repeat_region 1258 6620 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_938 1 7538 scaffold_938 . repeat_region 1486 6435 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_964 1 7539 scaffold_964 . repeat_region 1170 6015 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_934 1 7557 scaffold_934 . repeat_region 1 583 . ? . description=trf scaffold_934 . biological_region 544 544 0.999 - . logic_name=eponine scaffold_934 . repeat_region 1028 6260 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_935 1 7558 scaffold_935 . repeat_region 1000 4089 . ? . description=dust scaffold_935 . repeat_region 4132 4139 . ? . description=dust scaffold_935 . repeat_region 4148 4512 . + . description=Polinton-1_PI scaffold_935 . repeat_region 4484 4491 . ? . description=dust scaffold_935 . repeat_region 4627 4757 . + . description=Polinton-1_PI scaffold_935 . repeat_region 4781 4847 . + . description=Polinton-1_PI scaffold_935 . repeat_region 4863 5037 . + . description=Polinton-1_PI scaffold_935 . repeat_region 5045 6527 . ? . description=dust scaffold_935 ensembl protein_coding_gene 4982 7460 . + . ID=Physo145292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9350001;logic_name=jgi_physo1_1 scaffold_935 ensembl transcript 4982 7460 . + . ID=Physo145292;Parent=Physo145292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_935 . CDS 4982 5003 . + 0 ID=Physo145292;Parent=Physo145292;rank=1 scaffold_935 . exon 4982 5003 . + . ID=Physo145292.1;Parent=Physo145292;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_935 . CDS 6642 7459 . + 0 ID=Physo145292;Parent=Physo145292;rank=2 scaffold_935 . exon 6642 7460 . + . ID=Physo145292.2;Parent=Physo145292;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_963 1 7559 scaffold_963 . biological_region 558 558 0.999 + . logic_name=eponine scaffold_963 . repeat_region 835 6231 . ? . description=dust scaffold_963 . repeat_region 6232 7517 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_924 1 7580 scaffold_924 . repeat_region 1223 6234 . ? . description=dust scaffold_924 . biological_region 6334 6339 0.999 - . logic_name=eponine scaffold_924 . biological_region 6960 6961 0.999 + . logic_name=eponine scaffold_924 . biological_region 6968 6969 0.999 - . logic_name=eponine scaffold_924 . biological_region 7015 7016 0.999 - . logic_name=eponine scaffold_924 . biological_region 7324 7326 0.999 + . logic_name=eponine scaffold_924 . repeat_region 7527 7547 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_925 1 7580 scaffold_925 . biological_region 356 358 0.999 - . logic_name=eponine scaffold_925 . repeat_region 834 6305 . ? . description=dust scaffold_925 ensembl tRNA_gene 706 778 . + . ID=EPrPSOG00000000100;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_925 ensembl transcript 706 778 . + . ID=EPrPSOT00000000100;Parent=EPrPSOG00000000100;biotype=tRNA;logic_name=ncrna_eg scaffold_925 . exon 706 778 . + . ID=EPrPSOE00000000100;Parent=EPrPSOT00000000100;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_925 ensembl protein_coding_gene 6309 6398 . + . ID=Physo126259;biotype=protein_coding;external_name=estExt_Genewise1.C_9250001;logic_name=jgi_physo1_1 scaffold_925 ensembl transcript 6309 6398 . + . ID=Physo126259;Parent=Physo126259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_925 . CDS 6309 6398 . + 0 ID=Physo126259;Parent=Physo126259;rank=1 scaffold_925 . exon 6309 6398 . + . ID=Physo126259.1;Parent=Physo126259;constitutive=1;rank=1 scaffold_925 ensembl protein_coding_gene 6840 6953 . + . ID=Physo126260;biotype=protein_coding;external_name=estExt_Genewise1.C_9250002;logic_name=jgi_physo1_1 scaffold_925 ensembl transcript 6840 6953 . + . ID=Physo126260;Parent=Physo126260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_925 . CDS 6840 6953 . + 0 ID=Physo126260;Parent=Physo126260;rank=1 scaffold_925 . exon 6840 6953 . + . ID=Physo126260.1;Parent=Physo126260;constitutive=1;rank=1 scaffold_925 ensembl pseudogene 61 348 . + . ID=Physo145291;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_9250001;logic_name=jgi_physo1_1 scaffold_925 ensembl pseudogene 61 348 . + . ID=Physo145291;Parent=Physo145291;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_925 . exon 61 197 . + . ID=Physo145291.1;Parent=Physo145291;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_925 . exon 220 348 . + . ID=Physo145291.2;Parent=Physo145291;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_923 1 7586 scaffold_923 . biological_region 595 599 0.999 - . logic_name=eponine scaffold_923 . repeat_region 1189 2713 . ? . description=dust scaffold_923 . repeat_region 3734 6781 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_916 1 7596 scaffold_916 . repeat_region 2 1927 . + . description=GypsyPi-1c_I-int scaffold_916 . biological_region 547 550 0.999 + . logic_name=eponine scaffold_916 . biological_region 597 600 0.999 + . logic_name=eponine scaffold_916 . repeat_region 2304 2626 . + . description=GypsyPi-1c_I-int scaffold_916 . biological_region 2371 2374 0.999 - . logic_name=eponine scaffold_916 . biological_region 2379 2383 0.999 - . logic_name=eponine scaffold_916 . repeat_region 2748 2930 . + . description=GypsyPi-1c_LTR scaffold_916 . biological_region 4064 4071 0.999 - . logic_name=eponine scaffold_916 . repeat_region 7032 7070 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_933 1 7597 scaffold_933 . repeat_region 567 617 . ? . description=trf scaffold_933 . repeat_region 568 617 . ? . description=trf scaffold_933 . biological_region 851 855 0.999 - . logic_name=eponine scaffold_933 . repeat_region 1002 5717 . ? . description=dust scaffold_933 . biological_region 6121 6124 0.999 + . logic_name=eponine scaffold_933 . biological_region 6419 6422 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_913 1 7605 scaffold_913 . repeat_region 2 1354 . - . description=GypsyPi-1c_I-int scaffold_913 . repeat_region 1355 6820 . ? . description=dust scaffold_913 . biological_region 7261 7266 0.999 + . logic_name=eponine scaffold_913 . biological_region 7304 7314 0.999 + . logic_name=eponine scaffold_913 . biological_region 7332 7342 0.999 - . logic_name=eponine scaffold_913 . biological_region 7344 7347 0.999 + . logic_name=eponine scaffold_913 . biological_region 7393 7393 0.999 + . logic_name=eponine scaffold_913 . biological_region 7413 7418 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_909 1 7613 scaffold_909 . repeat_region 49 663 . - . description=GypsyPi-1c_I-int scaffold_909 . repeat_region 712 991 . ? . description=trf scaffold_909 . repeat_region 1236 6370 . ? . description=dust scaffold_909 . repeat_region 7149 7212 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_908 1 7614 scaffold_908 . repeat_region 894 6415 . ? . description=dust scaffold_908 . repeat_region 6444 6482 . ? . description=trf scaffold_908 . repeat_region 6456 6511 . ? . description=trf scaffold_908 . repeat_region 6456 6518 . ? . description=dust scaffold_908 . repeat_region 6456 6518 . ? . description=trf scaffold_908 . repeat_region 6456 6522 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_906 1 7615 scaffold_906 . repeat_region 328 335 . ? . description=dust scaffold_906 . biological_region 816 822 0.999 - . logic_name=eponine scaffold_906 . biological_region 837 840 0.999 - . logic_name=eponine scaffold_906 . biological_region 1005 1007 0.999 - . logic_name=eponine scaffold_906 . biological_region 1368 1370 0.999 + . logic_name=eponine scaffold_906 . repeat_region 1608 6827 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_907 1 7615 scaffold_907 . repeat_region 46 974 . - . description=GypsyPi-1c_I-int scaffold_907 . repeat_region 970 1098 . - . description=GypsyPi-1c_I-int scaffold_907 . repeat_region 1103 6279 . ? . description=dust scaffold_907 . repeat_region 6456 6470 . ? . description=dust scaffold_907 . biological_region 7243 7249 0.999 + . logic_name=eponine scaffold_907 ensembl protein_coding_gene 3 266 . - . ID=Physo126255;biotype=protein_coding;external_name=estExt_Genewise1.C_9070002;logic_name=jgi_physo1_1 scaffold_907 ensembl transcript 3 266 . - . ID=Physo126255;Parent=Physo126255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_907 . CDS 3 260 . - 0 ID=Physo126255;Parent=Physo126255;rank=1 scaffold_907 . exon 3 266 . - . ID=Physo126255.1;Parent=Physo126255;constitutive=1;ensembl_phase=-1;rank=1 scaffold_907 ensembl protein_coding_gene 771 977 . - . ID=Physo126256;biotype=protein_coding;external_name=estExt_Genewise1.C_9070003;logic_name=jgi_physo1_1 scaffold_907 ensembl transcript 771 977 . - . ID=Physo126256;Parent=Physo126256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_907 . CDS 771 863 . - 0 ID=Physo126256;Parent=Physo126256;rank=1 scaffold_907 . exon 771 977 . - . ID=Physo126256.1;Parent=Physo126256;constitutive=1;ensembl_phase=-1;rank=1 scaffold_907 ensembl protein_coding_gene 7008 7569 . - . ID=Physo145289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9070001;logic_name=jgi_physo1_1 scaffold_907 ensembl transcript 7008 7569 . - . ID=Physo145289;Parent=Physo145289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_907 . exon 7008 7045 . - . ID=Physo145289.2;Parent=Physo145289;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_907 . exon 7065 7569 . - . ID=Physo145289.1;Parent=Physo145289;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_907 . CDS 7156 7569 . - 0 ID=Physo145289;Parent=Physo145289;rank=1 ##gff-version 3 ##sequence-region scaffold_905 1 7619 scaffold_905 . repeat_region 1033 6335 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_932 1 7620 scaffold_932 . repeat_region 1057 1106 . ? . description=dust scaffold_932 . repeat_region 1626 1676 . ? . description=trf scaffold_932 . repeat_region 1626 1678 . ? . description=trf scaffold_932 . repeat_region 1739 1776 . ? . description=trf scaffold_932 . repeat_region 2870 2916 . ? . description=dust scaffold_932 . repeat_region 2875 2895 . ? . description=trf scaffold_932 . repeat_region 3570 3605 . ? . description=trf scaffold_932 . repeat_region 4049 4566 . ? . description=dust scaffold_932 . biological_region 5331 5331 0.999 + . logic_name=eponine scaffold_932 . repeat_region 5881 6928 . ? . description=dust scaffold_932 . biological_region 7053 7057 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_972 1 7621 scaffold_972 . repeat_region 907 4121 . ? . description=dust scaffold_972 . biological_region 4343 4344 0.999 + . logic_name=eponine scaffold_972 . repeat_region 5318 6721 . ? . description=dust scaffold_972 . repeat_region 7260 7621 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_561 1 7624 scaffold_561 . repeat_region 2 5044 . + . description=Polinton-1_PI scaffold_561 . repeat_region 3045 3057 . ? . description=dust scaffold_561 . repeat_region 5045 5463 . ? . description=dust scaffold_561 . repeat_region 5464 7614 . + . description=Polinton-1_PI scaffold_561 . repeat_region 6493 6500 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_903 1 7624 scaffold_903 . repeat_region 1121 6391 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_904 1 7624 scaffold_904 . repeat_region 429 466 . ? . description=trf scaffold_904 . repeat_region 1330 6139 . ? . description=dust scaffold_904 ensembl protein_coding_gene 60 713 . + . ID=Physo145288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9040001;logic_name=jgi_physo1_1 scaffold_904 ensembl transcript 60 713 . + . ID=Physo145288;Parent=Physo145288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_904 . exon 60 145 . + . ID=Physo145288.1;Parent=Physo145288;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_904 . exon 207 360 . + . ID=Physo145288.2;Parent=Physo145288;constitutive=1;ensembl_phase=-1;rank=2 scaffold_904 . CDS 253 360 . + 0 ID=Physo145288;Parent=Physo145288;rank=1 scaffold_904 . CDS 501 672 . + 0 ID=Physo145288;Parent=Physo145288;rank=2 scaffold_904 . exon 501 672 . + . ID=Physo145288.3;Parent=Physo145288;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_904 . CDS 700 713 . + 0 ID=Physo145288;Parent=Physo145288;rank=3 scaffold_904 . exon 700 713 . + . ID=Physo145288.4;Parent=Physo145288;constitutive=1;ensembl_phase=1;rank=4 ##gff-version 3 ##sequence-region scaffold_900 1 7629 scaffold_900 . repeat_region 1234 6496 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_896 1 7635 scaffold_896 . biological_region 389 392 0.999 - . logic_name=eponine scaffold_896 . repeat_region 592 623 . ? . description=trf scaffold_896 . biological_region 647 648 0.999 + . logic_name=eponine scaffold_896 . biological_region 670 674 0.999 + . logic_name=eponine scaffold_896 . biological_region 697 699 0.999 + . logic_name=eponine scaffold_896 . biological_region 740 743 0.999 - . logic_name=eponine scaffold_896 . biological_region 1376 1383 0.999 + . logic_name=eponine scaffold_896 . biological_region 1395 1400 0.999 + . logic_name=eponine scaffold_896 . biological_region 1457 1463 0.999 + . logic_name=eponine scaffold_896 . biological_region 1501 1507 0.999 - . logic_name=eponine scaffold_896 . biological_region 1526 1531 0.999 - . logic_name=eponine scaffold_896 . repeat_region 1555 6606 . ? . description=dust scaffold_896 . repeat_region 6610 7000 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_895 1 7636 scaffold_895 . repeat_region 958 1057 . ? . description=trf scaffold_895 . repeat_region 1227 6388 . ? . description=dust scaffold_895 ensembl protein_coding_gene 6387 6770 . + . ID=Physo126252;biotype=protein_coding;external_name=estExt_Genewise1.C_8950001;logic_name=jgi_physo1_1 scaffold_895 ensembl transcript 6387 6770 . + . ID=Physo126252;Parent=Physo126252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_895 . exon 6387 6770 . + . ID=Physo126252.1;Parent=Physo126252;constitutive=1;ensembl_phase=-1;rank=1 scaffold_895 . CDS 6399 6770 . + 0 ID=Physo126252;Parent=Physo126252;rank=1 ##gff-version 3 ##sequence-region scaffold_1005 1 7639 scaffold_1005 . repeat_region 964 6546 . ? . description=dust scaffold_1005 ensembl protein_coding_gene 33 7573 . + . ID=Physo145311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10050001;logic_name=jgi_physo1_1 scaffold_1005 ensembl transcript 33 7573 . + . ID=Physo145311;Parent=Physo145311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1005 . CDS 33 958 . + 0 ID=Physo145311;Parent=Physo145311;rank=1 scaffold_1005 . exon 33 958 . + . ID=Physo145311.1;Parent=Physo145311;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1005 . CDS 6680 7021 . + 0 ID=Physo145311;Parent=Physo145311;rank=2 scaffold_1005 . exon 6680 7021 . + . ID=Physo145311.2;Parent=Physo145311;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1005 . CDS 7063 7573 . + 0 ID=Physo145311;Parent=Physo145311;rank=3 scaffold_1005 . exon 7063 7573 . + . ID=Physo145311.3;Parent=Physo145311;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_892 1 7645 scaffold_892 . repeat_region 1366 1414 . ? . description=trf scaffold_892 . repeat_region 1453 6569 . ? . description=dust scaffold_892 . biological_region 7150 7151 0.999 + . logic_name=eponine scaffold_892 . repeat_region 7589 7645 . ? . description=trf scaffold_892 ensembl snRNA_gene 7306 7495 . - . ID=EPrPSOG00000000164;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_892 ensembl snRNA 7306 7495 . - . ID=EPrPSOT00000000164;Parent=EPrPSOG00000000164;biotype=snRNA;logic_name=ncrna_eg scaffold_892 . exon 7306 7495 . - . ID=EPrPSOE00000000164;Parent=EPrPSOT00000000164;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_918 1 7645 scaffold_918 . biological_region 563 569 0.999 + . logic_name=eponine scaffold_918 . repeat_region 2891 2922 . ? . description=trf scaffold_918 . repeat_region 3011 4260 . ? . description=dust scaffold_918 . repeat_region 4494 4520 . ? . description=dust scaffold_918 . repeat_region 4499 4520 . ? . description=trf scaffold_918 . repeat_region 4568 4600 . ? . description=trf scaffold_918 . biological_region 4831 4833 0.999 - . logic_name=eponine scaffold_918 . repeat_region 5200 5249 . ? . description=dust scaffold_918 . repeat_region 7302 7329 . ? . description=dust scaffold_918 . repeat_region 7308 7329 . ? . description=trf scaffold_918 . repeat_region 7377 7409 . ? . description=trf scaffold_918 ensembl pseudogene 6382 7429 . - . ID=Physo109725;biotype=pseudogene;external_name=estExt_fgenesh1_pm.C_9180001;logic_name=jgi_physo1_1 scaffold_918 ensembl pseudogene 6382 7429 . - . ID=Physo109725;Parent=Physo109725;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_918 . exon 6382 7429 . - . ID=Physo109725.1;Parent=Physo109725;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_891 1 7646 scaffold_891 . repeat_region 116 137 . ? . description=trf scaffold_891 . repeat_region 1017 6372 . ? . description=dust scaffold_891 . repeat_region 6757 6876 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_898 1 7651 scaffold_898 . repeat_region 1344 2842 . ? . description=dust scaffold_898 . repeat_region 3569 6779 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_889 1 7652 scaffold_889 . repeat_region 249 266 . ? . description=dust scaffold_889 . repeat_region 1574 6898 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_888 1 7654 scaffold_888 . repeat_region 120 138 . ? . description=dust scaffold_888 . repeat_region 1316 5956 . ? . description=dust scaffold_888 . repeat_region 7461 7509 . ? . description=trf scaffold_888 . repeat_region 7480 7518 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_887 1 7658 scaffold_887 . biological_region 102 104 0.999 - . logic_name=eponine scaffold_887 . biological_region 155 161 0.999 + . logic_name=eponine scaffold_887 . biological_region 211 215 0.999 + . logic_name=eponine scaffold_887 . biological_region 234 237 0.999 + . logic_name=eponine scaffold_887 . biological_region 346 347 0.999 - . logic_name=eponine scaffold_887 . biological_region 819 823 0.999 + . logic_name=eponine scaffold_887 . biological_region 1254 1260 0.999 - . logic_name=eponine scaffold_887 . biological_region 1275 1277 0.999 + . logic_name=eponine scaffold_887 . biological_region 1569 1571 0.999 - . logic_name=eponine scaffold_887 . biological_region 1914 1920 0.999 + . logic_name=eponine scaffold_887 . biological_region 1986 1990 0.999 - . logic_name=eponine scaffold_887 . repeat_region 2033 6798 . ? . description=dust scaffold_887 ensembl protein_coding_gene 806 2030 . + . ID=Physo126248;biotype=protein_coding;external_name=estExt_Genewise1.C_8870001;logic_name=jgi_physo1_1 scaffold_887 ensembl transcript 806 2030 . + . ID=Physo126248;Parent=Physo126248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_887 . exon 806 922 . + . ID=Physo126248.1;Parent=Physo126248;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_887 . CDS 919 922 . + 0 ID=Physo126248;Parent=Physo126248;rank=1 scaffold_887 . CDS 1082 1231 . + 0 ID=Physo126248;Parent=Physo126248;rank=2 scaffold_887 . exon 1082 1231 . + . ID=Physo126248.2;Parent=Physo126248;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_887 . CDS 1310 1640 . + 0 ID=Physo126248;Parent=Physo126248;rank=3 scaffold_887 . exon 1310 1640 . + . ID=Physo126248.3;Parent=Physo126248;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_887 . CDS 1718 2030 . + 0 ID=Physo126248;Parent=Physo126248;rank=4 scaffold_887 . exon 1718 2030 . + . ID=Physo126248.4;Parent=Physo126248;constitutive=1;ensembl_phase=2;rank=4 scaffold_887 ensembl protein_coding_gene 1 591 . - . ID=Physo145284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8870001;logic_name=jgi_physo1_1 scaffold_887 ensembl transcript 1 591 . - . ID=Physo145284;Parent=Physo145284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_887 . CDS 1 591 . - 0 ID=Physo145284;Parent=Physo145284;rank=1 scaffold_887 . exon 1 591 . - . ID=Physo145284.1;Parent=Physo145284;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_881 1 7667 scaffold_881 . repeat_region 3 732 . + . description=Polinton-1_PI scaffold_881 . repeat_region 950 1091 . + . description=Polinton-1_PI scaffold_881 . repeat_region 1092 6560 . ? . description=dust scaffold_881 . repeat_region 6750 6758 . ? . description=dust scaffold_881 . repeat_region 6847 6854 . ? . description=dust scaffold_881 . repeat_region 7375 7415 . + . description=SSU-rRNA_Tps ##gff-version 3 ##sequence-region scaffold_902 1 7668 scaffold_902 . repeat_region 865 1056 . ? . description=trf scaffold_902 . repeat_region 1058 2605 . ? . description=dust scaffold_902 . repeat_region 3573 6886 . ? . description=dust scaffold_902 . repeat_region 6887 7668 . ? . description=trf scaffold_902 . biological_region 7313 7313 0.999 - . logic_name=eponine scaffold_902 ensembl protein_coding_gene 6900 7617 . + . ID=Physo126253;biotype=protein_coding;external_name=estExt_Genewise1.C_9020001;logic_name=jgi_physo1_1 scaffold_902 ensembl transcript 6900 7617 . + . ID=Physo126253;Parent=Physo126253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_902 . exon 6900 7178 . + . ID=Physo126253.1;Parent=Physo126253;constitutive=1;ensembl_phase=-1;rank=1 scaffold_902 . CDS 6954 7178 . + 0 ID=Physo126253;Parent=Physo126253;rank=1 scaffold_902 . CDS 7351 7617 . + 0 ID=Physo126253;Parent=Physo126253;rank=2 scaffold_902 . exon 7351 7617 . + . ID=Physo126253.2;Parent=Physo126253;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_880 1 7669 scaffold_880 . repeat_region 878 3558 . ? . description=dust scaffold_880 . biological_region 3957 3961 0.999 + . logic_name=eponine scaffold_880 . repeat_region 4518 4541 . ? . description=trf scaffold_880 . repeat_region 5448 6263 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_875 1 7672 scaffold_875 . repeat_region 1332 6532 . ? . description=dust scaffold_875 . biological_region 6696 6705 0.999 + . logic_name=eponine scaffold_875 . repeat_region 6715 6809 . ? . description=trf scaffold_875 . biological_region 6755 6756 0.999 + . logic_name=eponine scaffold_875 . biological_region 7404 7405 0.999 + . logic_name=eponine scaffold_875 . biological_region 7528 7530 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_877 1 7672 scaffold_877 . repeat_region 1161 1168 . ? . description=dust scaffold_877 . repeat_region 1338 6787 . ? . description=dust scaffold_877 . repeat_region 6811 7267 . + . description=GypsyPi-1c_I-int scaffold_877 ensembl protein_coding_gene 6787 7257 . + . ID=Physo126245;biotype=protein_coding;external_name=estExt_Genewise1.C_8770001;logic_name=jgi_physo1_1 scaffold_877 ensembl transcript 6787 7257 . + . ID=Physo126245;Parent=Physo126245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_877 . exon 6787 7257 . + . ID=Physo126245.1;Parent=Physo126245;constitutive=1;ensembl_phase=-1;rank=1 scaffold_877 . CDS 6940 7257 . + 0 ID=Physo126245;Parent=Physo126245;rank=1 scaffold_877 ensembl protein_coding_gene 7510 7671 . + . ID=Physo126246;biotype=protein_coding;external_name=estExt_Genewise1.C_8770002;logic_name=jgi_physo1_1 scaffold_877 ensembl transcript 7510 7671 . + . ID=Physo126246;Parent=Physo126246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_877 . exon 7510 7671 . + . ID=Physo126246.1;Parent=Physo126246;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_877 . CDS 7529 7669 . + 0 ID=Physo126246;Parent=Physo126246;rank=1 ##gff-version 3 ##sequence-region scaffold_874 1 7677 scaffold_874 . repeat_region 1090 6392 . ? . description=dust scaffold_874 . repeat_region 6693 6743 . ? . description=trf scaffold_874 . repeat_region 6693 6745 . ? . description=trf scaffold_874 . repeat_region 6806 6843 . ? . description=trf scaffold_874 . biological_region 7205 7209 0.999 + . logic_name=eponine scaffold_874 . repeat_region 7220 7339 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_980 1 7694 scaffold_980 . repeat_region 1487 3352 . ? . description=dust scaffold_980 . repeat_region 4107 6254 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_866 1 7697 scaffold_866 . biological_region 4068 4073 0.999 - . logic_name=eponine scaffold_866 ensembl protein_coding_gene 4621 5559 . - . ID=Physo126242;biotype=protein_coding;external_name=estExt_Genewise1.C_8660004;logic_name=jgi_physo1_1 scaffold_866 ensembl transcript 4621 5559 . - . ID=Physo126242;Parent=Physo126242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_866 . CDS 4621 5460 . - 0 ID=Physo126242;Parent=Physo126242;rank=1 scaffold_866 . exon 4621 5559 . - . ID=Physo126242.1;Parent=Physo126242;constitutive=1;ensembl_phase=-1;rank=1 scaffold_866 ensembl protein_coding_gene 15 3393 . - . ID=Physo145280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8660001;logic_name=jgi_physo1_1 scaffold_866 ensembl transcript 15 3393 . - . ID=Physo145280;Parent=Physo145280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_866 . exon 15 467 . - . ID=Physo145280.5;Parent=Physo145280;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_866 . CDS 16 467 . - 0 ID=Physo145280;Parent=Physo145280;rank=5 scaffold_866 . CDS 499 1747 . - 0 ID=Physo145280;Parent=Physo145280;rank=4 scaffold_866 . exon 499 1747 . - . ID=Physo145280.4;Parent=Physo145280;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_866 . CDS 1867 1899 . - 0 ID=Physo145280;Parent=Physo145280;rank=3 scaffold_866 . exon 1867 1899 . - . ID=Physo145280.3;Parent=Physo145280;constitutive=1;rank=3 scaffold_866 . CDS 2337 2432 . - 0 ID=Physo145280;Parent=Physo145280;rank=2 scaffold_866 . exon 2337 2432 . - . ID=Physo145280.2;Parent=Physo145280;constitutive=1;rank=2 scaffold_866 . CDS 2941 3393 . - 0 ID=Physo145280;Parent=Physo145280;rank=1 scaffold_866 . exon 2941 3393 . - . ID=Physo145280.1;Parent=Physo145280;constitutive=1;rank=1 scaffold_866 ensembl protein_coding_gene 6850 7653 . - . ID=Physo145281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8660002;logic_name=jgi_physo1_1 scaffold_866 ensembl transcript 6850 7653 . - . ID=Physo145281;Parent=Physo145281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_866 . CDS 6850 7653 . - 0 ID=Physo145281;Parent=Physo145281;rank=1 scaffold_866 . exon 6850 7653 . - . ID=Physo145281.1;Parent=Physo145281;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_859 1 7711 scaffold_859 . repeat_region 1338 6424 . ? . description=dust scaffold_859 . biological_region 6595 6601 0.999 + . logic_name=eponine scaffold_859 . biological_region 7082 7084 0.999 + . logic_name=eponine scaffold_859 . biological_region 7190 7194 0.999 - . logic_name=eponine scaffold_859 . repeat_region 7600 7620 . ? . description=trf scaffold_859 ensembl protein_coding_gene 6984 7711 . + . ID=Physo145279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8590001;logic_name=jgi_physo1_1 scaffold_859 ensembl transcript 6984 7711 . + . ID=Physo145279;Parent=Physo145279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_859 . exon 6984 7711 . + . ID=Physo145279.1;Parent=Physo145279;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_859 . CDS 7033 7443 . + 0 ID=Physo145279;Parent=Physo145279;rank=1 ##gff-version 3 ##sequence-region scaffold_857 1 7713 scaffold_857 . repeat_region 802 5987 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_856 1 7714 scaffold_856 . biological_region 397 402 0.999 + . logic_name=eponine scaffold_856 . biological_region 426 427 0.999 - . logic_name=eponine scaffold_856 . biological_region 437 441 0.999 + . logic_name=eponine scaffold_856 . biological_region 499 502 0.999 + . logic_name=eponine scaffold_856 . biological_region 526 533 0.999 - . logic_name=eponine scaffold_856 . biological_region 957 963 0.999 + . logic_name=eponine scaffold_856 . biological_region 1012 1018 0.999 - . logic_name=eponine scaffold_856 . biological_region 1070 1071 0.999 - . logic_name=eponine scaffold_856 . repeat_region 1114 6454 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_884 1 7716 scaffold_884 . repeat_region 515 1320 . - . description=GypsyPi-1c_I-int scaffold_884 . biological_region 833 833 0.999 + . logic_name=eponine scaffold_884 . repeat_region 1321 1370 . ? . description=dust scaffold_884 . repeat_region 1511 3818 . - . description=GypsyPi-1c_I-int scaffold_884 . biological_region 2761 2761 0.999 + . logic_name=eponine scaffold_884 . biological_region 4350 4354 0.999 + . logic_name=eponine scaffold_884 . biological_region 4390 4392 0.999 + . logic_name=eponine scaffold_884 . biological_region 4415 4420 0.999 - . logic_name=eponine scaffold_884 . biological_region 4485 4488 0.999 - . logic_name=eponine scaffold_884 . repeat_region 6897 6906 . ? . description=dust scaffold_884 . biological_region 7272 7273 0.999 + . logic_name=eponine scaffold_884 . biological_region 7290 7291 0.999 + . logic_name=eponine scaffold_884 . biological_region 7386 7392 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_854 1 7718 scaffold_854 . biological_region 307 309 0.999 - . logic_name=eponine scaffold_854 . repeat_region 953 1813 . ? . description=dust scaffold_854 . biological_region 2328 2329 0.999 + . logic_name=eponine scaffold_854 . biological_region 2379 2384 0.999 - . logic_name=eponine scaffold_854 . repeat_region 3472 6250 . ? . description=dust scaffold_854 . repeat_region 6275 6866 . + . description=Polinton-1_PI scaffold_854 . repeat_region 6867 7718 . + . description=Polinton-1_PI scaffold_854 ensembl protein_coding_gene 467 2254 . - . ID=Physo109724;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_8540001;logic_name=jgi_physo1_1 scaffold_854 ensembl transcript 467 2254 . - . ID=Physo109724;Parent=Physo109724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_854 . exon 467 944 . - . ID=Physo109724.2;Parent=Physo109724;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_854 . CDS 468 944 . - 0 ID=Physo109724;Parent=Physo109724;rank=2 scaffold_854 . CDS 1814 1873 . - 0 ID=Physo109724;Parent=Physo109724;rank=1 scaffold_854 . exon 1814 2254 . - . ID=Physo109724.1;Parent=Physo109724;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_853 1 7727 scaffold_853 . repeat_region 864 2578 . ? . description=dust scaffold_853 . repeat_region 2719 2964 . ? . description=trf scaffold_853 . biological_region 2947 2949 0.999 + . logic_name=eponine scaffold_853 . biological_region 3044 3045 0.999 - . logic_name=eponine scaffold_853 . biological_region 3082 3085 0.999 - . logic_name=eponine scaffold_853 . biological_region 3178 3181 0.999 + . logic_name=eponine scaffold_853 . biological_region 3205 3211 0.999 + . logic_name=eponine scaffold_853 . repeat_region 3627 6856 . ? . description=dust scaffold_853 . repeat_region 7194 7351 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_851 1 7729 scaffold_851 . repeat_region 1245 6391 . ? . description=dust scaffold_851 . biological_region 6431 6436 0.999 + . logic_name=eponine scaffold_851 . biological_region 6473 6474 0.999 + . logic_name=eponine scaffold_851 . biological_region 6573 6578 0.999 + . logic_name=eponine scaffold_851 . biological_region 6775 6776 0.999 + . logic_name=eponine scaffold_851 ensembl protein_coding_gene 47 473 . + . ID=Physo145275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8510001;logic_name=jgi_physo1_1 scaffold_851 ensembl transcript 47 473 . + . ID=Physo145275;Parent=Physo145275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_851 . CDS 47 426 . + 0 ID=Physo145275;Parent=Physo145275;rank=1 scaffold_851 . exon 47 426 . + . ID=Physo145275.1;Parent=Physo145275;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_851 . CDS 455 473 . + 0 ID=Physo145275;Parent=Physo145275;rank=2 scaffold_851 . exon 455 473 . + . ID=Physo145275.2;Parent=Physo145275;constitutive=1;ensembl_phase=2;rank=2 scaffold_851 ensembl protein_coding_gene 991 7683 . - . ID=Physo145276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8510002;logic_name=jgi_physo1_1 scaffold_851 ensembl transcript 991 7683 . - . ID=Physo145276;Parent=Physo145276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_851 . CDS 991 1027 . - 0 ID=Physo145276;Parent=Physo145276;rank=3 scaffold_851 . exon 991 1027 . - . ID=Physo145276.4;Parent=Physo145276;constitutive=1;ensembl_phase=2;rank=4 scaffold_851 . CDS 6401 7016 . - 0 ID=Physo145276;Parent=Physo145276;rank=2 scaffold_851 . exon 6401 7016 . - . ID=Physo145276.3;Parent=Physo145276;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_851 . CDS 7352 7469 . - 0 ID=Physo145276;Parent=Physo145276;rank=1 scaffold_851 . exon 7352 7502 . - . ID=Physo145276.2;Parent=Physo145276;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_851 . exon 7573 7683 . - . ID=Physo145276.1;Parent=Physo145276;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_850 1 7734 scaffold_850 . biological_region 486 488 0.999 + . logic_name=eponine scaffold_850 . biological_region 564 565 0.999 + . logic_name=eponine scaffold_850 . biological_region 651 652 0.999 - . logic_name=eponine scaffold_850 . biological_region 679 682 0.999 - . logic_name=eponine scaffold_850 . biological_region 976 977 0.999 + . logic_name=eponine scaffold_850 . biological_region 1152 1154 0.999 + . logic_name=eponine scaffold_850 . repeat_region 2923 3553 . ? . description=dust scaffold_850 . biological_region 3711 3713 0.999 - . logic_name=eponine scaffold_850 . repeat_region 4613 4631 . ? . description=dust scaffold_850 . repeat_region 5769 6606 . ? . description=dust scaffold_850 ensembl protein_coding_gene 5414 5542 . - . ID=Physo126228;biotype=protein_coding;external_name=estExt_Genewise1.C_8500001;logic_name=jgi_physo1_1 scaffold_850 ensembl transcript 5414 5542 . - . ID=Physo126228;Parent=Physo126228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_850 . CDS 5414 5542 . - 0 ID=Physo126228;Parent=Physo126228;rank=1 scaffold_850 . exon 5414 5542 . - . ID=Physo126228.1;Parent=Physo126228;constitutive=1;rank=1 scaffold_850 ensembl protein_coding_gene 1223 2719 . + . ID=Physo145274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8500001;logic_name=jgi_physo1_1 scaffold_850 ensembl transcript 1223 2719 . + . ID=Physo145274;Parent=Physo145274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_850 . CDS 1223 1294 . + 0 ID=Physo145274;Parent=Physo145274;rank=1 scaffold_850 . exon 1223 1294 . + . ID=Physo145274.1;Parent=Physo145274;constitutive=1;rank=1 scaffold_850 . CDS 1421 2719 . + 0 ID=Physo145274;Parent=Physo145274;rank=2 scaffold_850 . exon 1421 2719 . + . ID=Physo145274.2;Parent=Physo145274;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_847 1 7739 scaffold_847 . repeat_region 1438 6932 . ? . description=dust scaffold_847 . biological_region 7135 7135 0.999 - . logic_name=eponine scaffold_847 . biological_region 7614 7618 0.999 + . logic_name=eponine scaffold_847 . biological_region 7618 7623 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_865 1 7740 scaffold_865 . repeat_region 14 497 . + . description=GypsyPi-1c_I-int scaffold_865 . biological_region 411 415 0.999 + . logic_name=eponine scaffold_865 . biological_region 460 465 0.999 + . logic_name=eponine scaffold_865 . repeat_region 901 6547 . ? . description=dust scaffold_865 . repeat_region 6550 7707 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_845 1 7742 scaffold_845 . repeat_region 1270 6595 . ? . description=dust scaffold_845 . repeat_region 6601 6917 . - . description=Polinton-1_PI scaffold_845 . repeat_region 6956 6963 . ? . description=dust scaffold_845 . repeat_region 7376 7474 . + . description=Polinton-1_PI scaffold_845 . repeat_region 7644 7728 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_846 1 7743 scaffold_846 . repeat_region 1355 6945 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_683 1 7756 scaffold_683 . biological_region 1877 1878 0.999 + . logic_name=eponine scaffold_683 . biological_region 2783 2785 0.999 - . logic_name=eponine scaffold_683 . repeat_region 3541 7059 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_839 1 7758 scaffold_839 . repeat_region 1657 6494 . ? . description=dust scaffold_839 . repeat_region 7325 7332 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_840 1 7760 scaffold_840 . biological_region 72 77 0.999 + . logic_name=eponine scaffold_840 . biological_region 107 108 0.999 + . logic_name=eponine scaffold_840 . biological_region 125 130 0.999 - . logic_name=eponine scaffold_840 . repeat_region 1315 2171 . ? . description=dust scaffold_840 . repeat_region 3986 6727 . ? . description=dust scaffold_840 . repeat_region 7713 7736 . ? . description=trf scaffold_840 ensembl protein_coding_gene 1 615 . - . ID=Physo145273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8400001;logic_name=jgi_physo1_1 scaffold_840 ensembl transcript 1 615 . - . ID=Physo145273;Parent=Physo145273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_840 . exon 1 386 . - . ID=Physo145273.2;Parent=Physo145273;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_840 . CDS 2 386 . - 0 ID=Physo145273;Parent=Physo145273;rank=2 scaffold_840 . CDS 578 615 . - 0 ID=Physo145273;Parent=Physo145273;rank=1 scaffold_840 . exon 578 615 . - . ID=Physo145273.1;Parent=Physo145273;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_893 1 7760 scaffold_893 . biological_region 96 103 0.999 + . logic_name=eponine scaffold_893 . repeat_region 155 180 . ? . description=trf scaffold_893 . biological_region 343 344 0.999 - . logic_name=eponine scaffold_893 . repeat_region 1537 2238 . ? . description=dust scaffold_893 . repeat_region 2256 3298 . + . description=GypsyPi-1c_I-int scaffold_893 . repeat_region 3311 5297 . ? . description=dust scaffold_893 . repeat_region 5302 5824 . + . description=GypsyPi-1c_I-int scaffold_893 . biological_region 6320 6322 0.999 - . logic_name=eponine scaffold_893 . biological_region 6325 6325 0.999 + . logic_name=eponine scaffold_893 . biological_region 7536 7543 0.999 + . logic_name=eponine scaffold_893 . repeat_region 7595 7620 . ? . description=trf scaffold_893 ensembl protein_coding_gene 2256 3226 . + . ID=Physo145286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8930001;logic_name=jgi_physo1_1 scaffold_893 ensembl transcript 2256 3226 . + . ID=Physo145286;Parent=Physo145286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_893 . CDS 2256 3124 . + 0 ID=Physo145286;Parent=Physo145286;rank=1 scaffold_893 . exon 2256 3124 . + . ID=Physo145286.1;Parent=Physo145286;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_893 . CDS 3220 3226 . + 0 ID=Physo145286;Parent=Physo145286;rank=2 scaffold_893 . exon 3220 3226 . + . ID=Physo145286.2;Parent=Physo145286;constitutive=1;ensembl_phase=2;rank=2 scaffold_893 ensembl protein_coding_gene 5695 6640 . + . ID=Physo145287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8930002;logic_name=jgi_physo1_1 scaffold_893 ensembl transcript 5695 6640 . + . ID=Physo145287;Parent=Physo145287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_893 . CDS 5695 6089 . + 0 ID=Physo145287;Parent=Physo145287;rank=1 scaffold_893 . exon 5695 6089 . + . ID=Physo145287.1;Parent=Physo145287;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_893 . CDS 6379 6640 . + 0 ID=Physo145287;Parent=Physo145287;rank=2 scaffold_893 . exon 6379 6640 . + . ID=Physo145287.2;Parent=Physo145287;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_837 1 7761 scaffold_837 . biological_region 218 220 0.999 - . logic_name=eponine scaffold_837 . biological_region 346 349 0.999 - . logic_name=eponine scaffold_837 . biological_region 372 375 0.999 - . logic_name=eponine scaffold_837 . biological_region 700 709 0.999 + . logic_name=eponine scaffold_837 . repeat_region 908 6114 . ? . description=dust scaffold_837 . biological_region 6438 6440 0.999 - . logic_name=eponine scaffold_837 . biological_region 6566 6569 0.999 - . logic_name=eponine scaffold_837 . biological_region 6592 6595 0.999 - . logic_name=eponine scaffold_837 . biological_region 6920 6929 0.999 + . logic_name=eponine scaffold_837 . biological_region 7083 7086 0.999 + . logic_name=eponine scaffold_837 . biological_region 7244 7245 0.999 - . logic_name=eponine scaffold_837 . biological_region 7265 7269 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_860 1 7765 scaffold_860 . repeat_region 914 6639 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_830 1 7772 scaffold_830 . repeat_region 9 495 . + . description=Polinton-1_PI scaffold_830 . repeat_region 444 480 . ? . description=dust scaffold_830 . repeat_region 1160 3040 . ? . description=dust scaffold_830 . repeat_region 5077 5877 . ? . description=dust scaffold_830 . repeat_region 6244 7764 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_873 1 7773 scaffold_873 . repeat_region 1112 6206 . ? . description=dust scaffold_873 . biological_region 6481 6485 0.999 - . logic_name=eponine scaffold_873 . biological_region 6926 6927 0.999 + . logic_name=eponine scaffold_873 . biological_region 6943 6946 0.999 + . logic_name=eponine scaffold_873 . biological_region 6974 6979 0.999 + . logic_name=eponine scaffold_873 ensembl protein_coding_gene 201 812 . - . ID=Physo145282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8730001;logic_name=jgi_physo1_1 scaffold_873 ensembl transcript 201 812 . - . ID=Physo145282;Parent=Physo145282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_873 . CDS 201 812 . - 0 ID=Physo145282;Parent=Physo145282;rank=1 scaffold_873 . exon 201 812 . - . ID=Physo145282.1;Parent=Physo145282;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_831 1 7774 scaffold_831 . repeat_region 1050 6681 . ? . description=dust scaffold_831 . biological_region 6776 6780 0.999 + . logic_name=eponine scaffold_831 . biological_region 6832 6833 0.999 - . logic_name=eponine scaffold_831 . biological_region 6869 6869 0.999 - . logic_name=eponine scaffold_831 . biological_region 6920 6928 0.999 + . logic_name=eponine scaffold_831 . biological_region 6942 6948 0.999 + . logic_name=eponine scaffold_831 . biological_region 6977 6982 0.999 - . logic_name=eponine scaffold_831 . biological_region 7003 7005 0.999 - . logic_name=eponine scaffold_831 . biological_region 7122 7124 0.999 - . logic_name=eponine scaffold_831 . biological_region 7700 7705 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_818 1 7781 scaffold_818 . repeat_region 1931 2522 . ? . description=dust scaffold_818 . repeat_region 4639 4701 . ? . description=trf scaffold_818 . repeat_region 6705 6744 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_826 1 7782 scaffold_826 . repeat_region 970 6543 . ? . description=dust scaffold_826 . repeat_region 6987 6996 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_825 1 7785 scaffold_825 . repeat_region 1 1612 . + . description=Gypsy-2-I_PI-int scaffold_825 . repeat_region 1614 6488 . ? . description=dust scaffold_825 . biological_region 6748 6754 0.999 + . logic_name=eponine scaffold_825 . repeat_region 7030 7785 . - . description=GypsyPi-1c_I-int scaffold_825 . biological_region 7102 7103 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_824 1 7788 scaffold_824 . repeat_region 1081 1244 . ? . description=trf scaffold_824 . repeat_region 1587 5855 . ? . description=dust scaffold_824 . repeat_region 6104 6144 . ? . description=trf scaffold_824 . repeat_region 7247 7256 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_942 1 7790 scaffold_942 . repeat_region 1454 6499 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_815 1 7799 scaffold_815 . repeat_region 82 118 . ? . description=trf scaffold_815 . biological_region 753 758 0.999 + . logic_name=eponine scaffold_815 . repeat_region 1087 2795 . ? . description=dust scaffold_815 . repeat_region 3096 3104 . ? . description=dust scaffold_815 . repeat_region 3779 7110 . ? . description=dust scaffold_815 . repeat_region 7427 7434 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_816 1 7799 scaffold_816 . biological_region 411 413 0.999 - . logic_name=eponine scaffold_816 . biological_region 634 640 0.999 - . logic_name=eponine scaffold_816 . repeat_region 1902 1967 . ? . description=trf scaffold_816 . repeat_region 1982 2929 . ? . description=dust scaffold_816 . biological_region 3071 3075 0.999 + . logic_name=eponine scaffold_816 . biological_region 3844 3846 0.999 + . logic_name=eponine scaffold_816 . repeat_region 3854 3915 . ? . description=trf scaffold_816 . biological_region 3866 3874 0.999 + . logic_name=eponine scaffold_816 . biological_region 3873 3877 0.999 - . logic_name=eponine scaffold_816 . biological_region 4020 4022 0.999 + . logic_name=eponine scaffold_816 . repeat_region 4027 4112 . ? . description=trf scaffold_816 . repeat_region 4027 4112 . ? . description=trf scaffold_816 . biological_region 4748 4750 0.999 + . logic_name=eponine scaffold_816 . biological_region 4779 4782 0.999 - . logic_name=eponine scaffold_816 . biological_region 5106 5108 0.999 - . logic_name=eponine scaffold_816 . repeat_region 5519 5571 . ? . description=trf scaffold_816 . biological_region 5557 5561 0.999 - . logic_name=eponine scaffold_816 . biological_region 5617 5621 0.999 - . logic_name=eponine scaffold_816 . biological_region 6176 6181 0.999 - . logic_name=eponine scaffold_816 . biological_region 6575 6576 0.999 + . logic_name=eponine scaffold_816 . biological_region 6611 6616 0.999 + . logic_name=eponine scaffold_816 . biological_region 6644 6649 0.999 + . logic_name=eponine scaffold_816 . biological_region 6688 6695 0.999 + . logic_name=eponine scaffold_816 . biological_region 6722 6724 0.999 - . logic_name=eponine scaffold_816 . biological_region 6736 6743 0.999 - . logic_name=eponine scaffold_816 . biological_region 6763 6766 0.999 + . logic_name=eponine scaffold_816 . biological_region 6777 6780 0.999 + . logic_name=eponine scaffold_816 . biological_region 6784 6789 0.999 - . logic_name=eponine scaffold_816 . biological_region 7315 7320 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_814 1 7800 scaffold_814 . repeat_region 933 990 . ? . description=trf scaffold_814 . repeat_region 987 1016 . ? . description=trf scaffold_814 . repeat_region 1484 6951 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_813 1 7803 scaffold_813 . repeat_region 19 446 . + . description=GypsyPi-1c_I-int scaffold_813 . repeat_region 763 6249 . ? . description=dust scaffold_813 . biological_region 6709 6712 0.999 + . logic_name=eponine scaffold_813 . biological_region 6748 6749 0.999 + . logic_name=eponine scaffold_813 . biological_region 6775 6776 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_812 1 7807 scaffold_812 . repeat_region 1473 6934 . ? . description=dust scaffold_812 . biological_region 7139 7139 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_811 1 7808 scaffold_811 . repeat_region 198 962 . + . description=Polinton-1_PI scaffold_811 . repeat_region 963 4308 . ? . description=dust scaffold_811 . repeat_region 4586 5367 . + . description=Polinton-1_PI scaffold_811 . repeat_region 5441 5619 . + . description=Polinton-1_PI scaffold_811 . repeat_region 5642 6927 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_810 1 7810 scaffold_810 . repeat_region 1974 7078 . ? . description=dust scaffold_810 . repeat_region 7129 7136 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_838 1 7810 scaffold_838 . repeat_region 1 503 . + . description=GypsyPi-1c_I-int scaffold_838 . repeat_region 925 948 . ? . description=trf scaffold_838 . biological_region 2000 2002 0.999 + . logic_name=eponine scaffold_838 . repeat_region 2057 2180 . + . description=GypsyPi-1c_I-int scaffold_838 . biological_region 3302 3303 0.999 - . logic_name=eponine scaffold_838 . biological_region 3339 3345 0.999 - . logic_name=eponine scaffold_838 . biological_region 3729 3733 0.999 + . logic_name=eponine scaffold_838 . biological_region 3847 3850 0.999 + . logic_name=eponine scaffold_838 . biological_region 3848 3849 0.999 - . logic_name=eponine scaffold_838 . biological_region 3865 3868 0.999 - . logic_name=eponine scaffold_838 . biological_region 4964 4964 0.999 - . logic_name=eponine scaffold_838 . biological_region 5039 5040 0.999 + . logic_name=eponine scaffold_838 . biological_region 5066 5067 0.999 - . logic_name=eponine scaffold_838 . biological_region 5231 5234 0.999 - . logic_name=eponine scaffold_838 . repeat_region 5918 5967 . ? . description=dust scaffold_838 . repeat_region 5968 6127 . - . description=GypsyPi-1c_I-int scaffold_838 . repeat_region 6128 6430 . - . description=GypsyPi-1c_LTR scaffold_838 ensembl protein_coding_gene 171 518 . + . ID=Physo126225;biotype=protein_coding;external_name=estExt_Genewise1.C_8380001;logic_name=jgi_physo1_1 scaffold_838 ensembl transcript 171 518 . + . ID=Physo126225;Parent=Physo126225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_838 . exon 171 518 . + . ID=Physo126225.1;Parent=Physo126225;constitutive=1;ensembl_phase=-1;rank=1 scaffold_838 . CDS 261 518 . + 0 ID=Physo126225;Parent=Physo126225;rank=1 scaffold_838 ensembl protein_coding_gene 2051 2380 . + . ID=Physo145271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8380001;logic_name=jgi_physo1_1 scaffold_838 ensembl transcript 2051 2380 . + . ID=Physo145271;Parent=Physo145271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_838 . CDS 2051 2380 . + 0 ID=Physo145271;Parent=Physo145271;rank=1 scaffold_838 . exon 2051 2380 . + . ID=Physo145271.1;Parent=Physo145271;constitutive=1;rank=1 scaffold_838 ensembl protein_coding_gene 3466 4131 . + . ID=Physo145272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8380002;logic_name=jgi_physo1_1 scaffold_838 ensembl transcript 3466 4131 . + . ID=Physo145272;Parent=Physo145272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_838 . CDS 3466 4131 . + 0 ID=Physo145272;Parent=Physo145272;rank=1 scaffold_838 . exon 3466 4131 . + . ID=Physo145272.1;Parent=Physo145272;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_809 1 7811 scaffold_809 . repeat_region 785 6409 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_808 1 7815 scaffold_808 . biological_region 701 704 0.999 - . logic_name=eponine scaffold_808 . biological_region 917 920 0.999 - . logic_name=eponine scaffold_808 . repeat_region 1172 5253 . ? . description=dust scaffold_808 ensembl protein_coding_gene 369 782 . - . ID=Physo126222;biotype=protein_coding;external_name=estExt_Genewise1.C_8080001;logic_name=jgi_physo1_1 scaffold_808 ensembl transcript 369 782 . - . ID=Physo126222;Parent=Physo126222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_808 . CDS 369 560 . - 0 ID=Physo126222;Parent=Physo126222;rank=1 scaffold_808 . exon 369 782 . - . ID=Physo126222.1;Parent=Physo126222;constitutive=1;ensembl_phase=-1;rank=1 scaffold_808 ensembl protein_coding_gene 6312 7559 . - . ID=Physo145270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8080001;logic_name=jgi_physo1_1 scaffold_808 ensembl transcript 6312 7559 . - . ID=Physo145270;Parent=Physo145270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_808 . CDS 6312 7375 . - 0 ID=Physo145270;Parent=Physo145270;rank=2 scaffold_808 . exon 6312 7375 . - . ID=Physo145270.2;Parent=Physo145270;constitutive=1;ensembl_phase=1;rank=2 scaffold_808 . CDS 7448 7559 . - 0 ID=Physo145270;Parent=Physo145270;rank=1 scaffold_808 . exon 7448 7559 . - . ID=Physo145270.1;Parent=Physo145270;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_806 1 7818 scaffold_806 . biological_region 847 853 0.999 + . logic_name=eponine scaffold_806 . biological_region 882 886 0.999 - . logic_name=eponine scaffold_806 . biological_region 1841 1844 0.999 + . logic_name=eponine scaffold_806 . biological_region 1945 1948 0.999 + . logic_name=eponine scaffold_806 . repeat_region 2010 6918 . ? . description=dust scaffold_806 . repeat_region 6919 7818 . + . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_801 1 7821 scaffold_801 . repeat_region 1365 6974 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_802 1 7821 scaffold_802 . repeat_region 338 407 . ? . description=trf scaffold_802 . biological_region 444 447 0.999 - . logic_name=eponine scaffold_802 . biological_region 500 506 0.999 + . logic_name=eponine scaffold_802 . repeat_region 628 926 . ? . description=trf scaffold_802 . repeat_region 1666 6953 . ? . description=dust scaffold_802 . repeat_region 6962 7821 . + . description=GypsyPi-1c_I-int scaffold_802 ensembl protein_coding_gene 7052 7537 . + . ID=Physo145269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8020001;logic_name=jgi_physo1_1 scaffold_802 ensembl transcript 7052 7537 . + . ID=Physo145269;Parent=Physo145269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_802 . CDS 7052 7221 . + 0 ID=Physo145269;Parent=Physo145269;rank=1 scaffold_802 . exon 7052 7221 . + . ID=Physo145269.1;Parent=Physo145269;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_802 . CDS 7273 7537 . + 0 ID=Physo145269;Parent=Physo145269;rank=2 scaffold_802 . exon 7273 7537 . + . ID=Physo145269.2;Parent=Physo145269;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_805 1 7822 scaffold_805 . repeat_region 882 6272 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_832 1 7822 scaffold_832 . repeat_region 882 931 . ? . description=dust scaffold_832 . repeat_region 1658 6431 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_871 1 7830 scaffold_871 . repeat_region 948 956 . ? . description=dust scaffold_871 . repeat_region 1108 1932 . ? . description=dust scaffold_871 . repeat_region 4201 4250 . ? . description=dust scaffold_871 . repeat_region 5461 5510 . ? . description=dust scaffold_871 . repeat_region 7003 7052 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_822 1 7837 scaffold_822 . repeat_region 134 157 . ? . description=dust scaffold_822 . repeat_region 828 3569 . ? . description=dust scaffold_822 . repeat_region 5100 5107 . ? . description=dust scaffold_822 . repeat_region 6706 6755 . ? . description=dust scaffold_822 ensembl protein_coding_gene 6127 6693 . + . ID=Physo126223;biotype=protein_coding;external_name=estExt_Genewise1.C_8220001;logic_name=jgi_physo1_1 scaffold_822 ensembl transcript 6127 6693 . + . ID=Physo126223;Parent=Physo126223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_822 . exon 6127 6693 . + . ID=Physo126223.1;Parent=Physo126223;constitutive=1;ensembl_phase=-1;rank=1 scaffold_822 . CDS 6172 6693 . + 0 ID=Physo126223;Parent=Physo126223;rank=1 ##gff-version 3 ##sequence-region scaffold_800 1 7838 scaffold_800 . repeat_region 560 605 . ? . description=trf scaffold_800 . repeat_region 568 624 . ? . description=trf scaffold_800 . repeat_region 944 996 . ? . description=trf scaffold_800 . repeat_region 1385 7031 . ? . description=dust scaffold_800 . biological_region 7266 7267 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_794 1 7839 scaffold_794 . biological_region 1059 1065 0.999 - . logic_name=eponine scaffold_794 . biological_region 1489 1490 0.999 + . logic_name=eponine scaffold_794 . repeat_region 1992 2041 . ? . description=dust scaffold_794 . repeat_region 3230 4031 . ? . description=dust scaffold_794 . repeat_region 4120 4132 . ? . description=dust scaffold_794 . repeat_region 6039 6658 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_793 1 7842 scaffold_793 . repeat_region 881 5917 . ? . description=dust scaffold_793 . biological_region 7448 7450 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_791 1 7845 scaffold_791 . repeat_region 1097 6869 . ? . description=dust scaffold_791 . biological_region 7358 7359 0.999 + . logic_name=eponine scaffold_791 . biological_region 7358 7359 0.999 - . logic_name=eponine scaffold_791 . biological_region 7415 7415 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_792 1 7845 scaffold_792 . repeat_region 3 505 . - . description=Polinton-1_PI scaffold_792 . repeat_region 1071 4249 . ? . description=dust scaffold_792 . repeat_region 4250 5116 . - . description=Polinton-1_PI scaffold_792 . repeat_region 5123 6858 . ? . description=dust scaffold_792 . repeat_region 6859 7845 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_883 1 7849 scaffold_883 . repeat_region 694 5575 . ? . description=dust scaffold_883 . biological_region 6886 6887 0.999 - . logic_name=eponine scaffold_883 . biological_region 6941 6943 0.999 + . logic_name=eponine scaffold_883 . biological_region 7134 7137 0.999 - . logic_name=eponine scaffold_883 . repeat_region 7473 7491 . ? . description=dust scaffold_883 ensembl protein_coding_gene 257 547 . + . ID=Physo126247;biotype=protein_coding;external_name=estExt_Genewise1.C_8830001;logic_name=jgi_physo1_1 scaffold_883 ensembl transcript 257 547 . + . ID=Physo126247;Parent=Physo126247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_883 . exon 257 547 . + . ID=Physo126247.1;Parent=Physo126247;constitutive=1;ensembl_phase=-1;rank=1 scaffold_883 . CDS 323 547 . + 0 ID=Physo126247;Parent=Physo126247;rank=1 scaffold_883 ensembl protein_coding_gene 6038 7245 . - . ID=Physo145283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_8830001;logic_name=jgi_physo1_1 scaffold_883 ensembl transcript 6038 7245 . - . ID=Physo145283;Parent=Physo145283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_883 . CDS 6038 6057 . - 0 ID=Physo145283;Parent=Physo145283;rank=3 scaffold_883 . exon 6038 6057 . - . ID=Physo145283.3;Parent=Physo145283;constitutive=1;ensembl_phase=1;rank=3 scaffold_883 . CDS 6084 6104 . - 0 ID=Physo145283;Parent=Physo145283;rank=2 scaffold_883 . exon 6084 6104 . - . ID=Physo145283.2;Parent=Physo145283;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_883 . CDS 6162 7245 . - 0 ID=Physo145283;Parent=Physo145283;rank=1 scaffold_883 . exon 6162 7245 . - . ID=Physo145283.1;Parent=Physo145283;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_790 1 7850 scaffold_790 . repeat_region 853 3830 . ? . description=dust scaffold_790 . repeat_region 4214 4237 . ? . description=trf scaffold_790 . biological_region 4792 4798 0.999 - . logic_name=eponine scaffold_790 . repeat_region 5023 6374 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_788 1 7853 scaffold_788 . repeat_region 834 6446 . ? . description=dust scaffold_788 . biological_region 6544 6545 0.999 - . logic_name=eponine scaffold_788 . biological_region 6557 6558 0.999 + . logic_name=eponine scaffold_788 . repeat_region 7317 7369 . ? . description=trf scaffold_788 . biological_region 7355 7359 0.999 - . logic_name=eponine scaffold_788 . biological_region 7415 7419 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_786 1 7859 scaffold_786 . repeat_region 1723 1854 . ? . description=trf scaffold_786 . repeat_region 2075 6968 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_784 1 7860 scaffold_784 . biological_region 166 170 0.999 + . logic_name=eponine scaffold_784 . biological_region 269 272 0.999 + . logic_name=eponine scaffold_784 . biological_region 298 301 0.999 - . logic_name=eponine scaffold_784 . biological_region 338 341 0.999 - . logic_name=eponine scaffold_784 . biological_region 391 396 0.999 - . logic_name=eponine scaffold_784 . repeat_region 775 6600 . ? . description=dust scaffold_784 . biological_region 6856 6858 0.999 + . logic_name=eponine scaffold_784 . biological_region 7228 7230 0.999 + . logic_name=eponine scaffold_784 . biological_region 7364 7371 0.999 + . logic_name=eponine scaffold_784 . repeat_region 7398 7425 . ? . description=trf scaffold_784 . biological_region 7467 7467 0.999 - . logic_name=eponine scaffold_784 . biological_region 7602 7605 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_785 1 7860 scaffold_785 . repeat_region 1 298 . ? . description=trf scaffold_785 . repeat_region 5 282 . ? . description=trf scaffold_785 . biological_region 150 150 0.999 - . logic_name=eponine scaffold_785 . repeat_region 303 448 . ? . description=trf scaffold_785 . repeat_region 1214 6491 . ? . description=dust scaffold_785 . repeat_region 7445 7458 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_783 1 7863 scaffold_783 . repeat_region 1321 6430 . ? . description=dust scaffold_783 . repeat_region 7077 7084 . ? . description=dust scaffold_783 ensembl protein_coding_gene 492 802 . + . ID=Physo126215;biotype=protein_coding;external_name=estExt_Genewise1.C_7830001;logic_name=jgi_physo1_1 scaffold_783 ensembl transcript 492 802 . + . ID=Physo126215;Parent=Physo126215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_783 . exon 492 802 . + . ID=Physo126215.1;Parent=Physo126215;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_783 . CDS 637 786 . + 0 ID=Physo126215;Parent=Physo126215;rank=1 ##gff-version 3 ##sequence-region scaffold_782 1 7866 scaffold_782 . repeat_region 1056 6907 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_779 1 7872 scaffold_779 . repeat_region 1169 5427 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_565 1 7874 scaffold_565 . repeat_region 1009 1035 . ? . description=trf scaffold_565 . repeat_region 4265 4314 . ? . description=dust scaffold_565 . biological_region 4785 4785 0.999 - . logic_name=eponine scaffold_565 . repeat_region 5557 5606 . ? . description=dust scaffold_565 ensembl protein_coding_gene 4483 5544 . - . ID=Physo126031;biotype=protein_coding;external_name=estExt_Genewise1.C_5650001;logic_name=jgi_physo1_1 scaffold_565 ensembl transcript 4483 5544 . - . ID=Physo126031;Parent=Physo126031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_565 . CDS 4483 5397 . - 0 ID=Physo126031;Parent=Physo126031;rank=1 scaffold_565 . exon 4483 5544 . - . ID=Physo126031.1;Parent=Physo126031;constitutive=1;ensembl_phase=-1;rank=1 scaffold_565 ensembl protein_coding_gene 2570 3520 . - . ID=Physo145171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5650001;logic_name=jgi_physo1_1 scaffold_565 ensembl transcript 2570 3520 . - . ID=Physo145171;Parent=Physo145171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_565 . CDS 2570 3520 . - 0 ID=Physo145171;Parent=Physo145171;rank=1 scaffold_565 . exon 2570 3520 . - . ID=Physo145171.1;Parent=Physo145171;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_780 1 7874 scaffold_780 . repeat_region 30 945 . + . description=Polinton-1_PI scaffold_780 . repeat_region 1158 2101 . ? . description=dust scaffold_780 . repeat_region 3554 7235 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_796 1 7875 scaffold_796 . biological_region 836 840 0.999 - . logic_name=eponine scaffold_796 . repeat_region 1240 6845 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_827 1 7875 scaffold_827 . repeat_region 1239 5930 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_778 1 7879 scaffold_778 . repeat_region 1223 7077 . ? . description=dust scaffold_778 . repeat_region 7590 7597 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_777 1 7882 scaffold_777 . repeat_region 219 226 . ? . description=dust scaffold_777 . repeat_region 362 370 . ? . description=dust scaffold_777 . biological_region 758 760 0.999 - . logic_name=eponine scaffold_777 . repeat_region 811 930 . ? . description=trf scaffold_777 . biological_region 811 816 0.999 + . logic_name=eponine scaffold_777 . repeat_region 816 879 . ? . description=dust scaffold_777 . biological_region 877 887 0.999 - . logic_name=eponine scaffold_777 . biological_region 978 981 0.999 - . logic_name=eponine scaffold_777 . repeat_region 1295 1305 . ? . description=dust scaffold_777 . repeat_region 1690 1734 . ? . description=trf scaffold_777 . repeat_region 1922 6684 . ? . description=dust scaffold_777 . repeat_region 6688 7696 . + . description=GypsyPi-1c_I-int scaffold_777 . repeat_region 7433 7482 . ? . description=trf scaffold_777 . repeat_region 7433 7482 . ? . description=trf scaffold_777 ensembl tRNA_gene 589 658 . - . ID=EPrPSOG00000000207;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_777 ensembl transcript 589 658 . - . ID=EPrPSOT00000000207;Parent=EPrPSOG00000000207;biotype=tRNA;logic_name=ncrna_eg scaffold_777 . exon 589 658 . - . ID=EPrPSOE00000000207;Parent=EPrPSOT00000000207;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_820 1 7884 scaffold_820 . biological_region 666 670 0.999 + . logic_name=eponine scaffold_820 . biological_region 741 744 0.999 - . logic_name=eponine scaffold_820 . biological_region 760 768 0.999 - . logic_name=eponine scaffold_820 . repeat_region 1320 3672 . ? . description=dust scaffold_820 . biological_region 5407 5408 0.999 + . logic_name=eponine scaffold_820 . repeat_region 5633 6236 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_773 1 7892 scaffold_773 . repeat_region 296 602 . - . description=GypsyPi-1c_I-int scaffold_773 . biological_region 1174 1175 0.999 + . logic_name=eponine scaffold_773 . biological_region 1201 1202 0.999 - . logic_name=eponine scaffold_773 . biological_region 1270 1272 0.999 - . logic_name=eponine scaffold_773 . repeat_region 1404 6677 . ? . description=dust scaffold_773 . repeat_region 7471 7481 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_774 1 7892 scaffold_774 . repeat_region 1116 2359 . ? . description=dust scaffold_774 . repeat_region 2407 2486 . ? . description=trf scaffold_774 . repeat_region 2711 2723 . ? . description=dust scaffold_774 . biological_region 2895 2897 0.999 - . logic_name=eponine scaffold_774 . repeat_region 3774 6528 . ? . description=dust scaffold_774 ensembl protein_coding_gene 7158 7322 . + . ID=Physo126214;biotype=protein_coding;external_name=estExt_Genewise1.C_7740001;logic_name=jgi_physo1_1 scaffold_774 ensembl transcript 7158 7322 . + . ID=Physo126214;Parent=Physo126214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_774 . exon 7158 7322 . + . ID=Physo126214.1;Parent=Physo126214;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_774 . CDS 7160 7303 . + 0 ID=Physo126214;Parent=Physo126214;rank=1 ##gff-version 3 ##sequence-region scaffold_768 1 7902 scaffold_768 . biological_region 435 439 0.999 - . logic_name=eponine scaffold_768 . biological_region 492 494 0.999 + . logic_name=eponine scaffold_768 . repeat_region 1352 3159 . ? . description=dust scaffold_768 . repeat_region 3795 3814 . ? . description=trf scaffold_768 . biological_region 6899 6899 0.999 + . logic_name=eponine scaffold_768 . biological_region 6952 6952 0.999 + . logic_name=eponine scaffold_768 . repeat_region 7013 7042 . ? . description=trf scaffold_768 . biological_region 7056 7059 0.999 - . logic_name=eponine scaffold_768 . biological_region 7122 7124 0.999 - . logic_name=eponine scaffold_768 ensembl protein_coding_gene 6531 7240 . + . ID=Physo109722;biotype=protein_coding;description=Elicitin proteinPutative elicitin protein SOJ2B [Source:UniProtKB/TrEMBL%3BAcc:Q84UD7];external_name=SOJ2;logic_name=jgi_physo1_1 scaffold_768 ensembl transcript 6531 7240 . + . ID=Physo109722;Parent=Physo109722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_768 . exon 6531 7240 . + . ID=Physo109722.1;Parent=Physo109722;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_768 . CDS 6566 7150 . + 0 ID=Physo109722;Parent=Physo109722;rank=1 scaffold_768 ensembl protein_coding_gene 802 1179 . + . ID=Physo126212;biotype=protein_coding;external_name=estExt_Genewise1.C_7680009;logic_name=jgi_physo1_1 scaffold_768 ensembl transcript 802 1179 . + . ID=Physo126212;Parent=Physo126212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_768 . CDS 802 1179 . + 0 ID=Physo126212;Parent=Physo126212;rank=1 scaffold_768 . exon 802 1179 . + . ID=Physo126212.1;Parent=Physo126212;constitutive=1;rank=1 scaffold_768 ensembl protein_coding_gene 4305 5524 . - . ID=Physo145265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7680002;logic_name=jgi_physo1_1 scaffold_768 ensembl transcript 4305 5524 . - . ID=Physo145265;Parent=Physo145265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_768 . CDS 4305 4660 . - 0 ID=Physo145265;Parent=Physo145265;rank=2 scaffold_768 . exon 4305 4660 . - . ID=Physo145265.2;Parent=Physo145265;constitutive=1;ensembl_phase=1;rank=2 scaffold_768 . CDS 4714 5524 . - 0 ID=Physo145265;Parent=Physo145265;rank=1 scaffold_768 . exon 4714 5524 . - . ID=Physo145265.1;Parent=Physo145265;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_764 1 7903 scaffold_764 . repeat_region 295 346 . ? . description=dust scaffold_764 . repeat_region 1515 5817 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_767 1 7903 scaffold_767 . repeat_region 4 1005 . - . description=GypsyPi-1c_I-int scaffold_767 . biological_region 833 833 0.999 - . logic_name=eponine scaffold_767 . repeat_region 1007 6685 . ? . description=dust scaffold_767 ensembl protein_coding_gene 23 719 . - . ID=Physo145263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7670001;logic_name=jgi_physo1_1 scaffold_767 ensembl transcript 23 719 . - . ID=Physo145263;Parent=Physo145263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_767 . exon 23 719 . - . ID=Physo145263.1;Parent=Physo145263;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_767 . CDS 24 719 . - 0 ID=Physo145263;Parent=Physo145263;rank=1 ##gff-version 3 ##sequence-region scaffold_769 1 7903 scaffold_769 . biological_region 156 156 0.999 + . logic_name=eponine scaffold_769 . biological_region 437 439 0.999 + . logic_name=eponine scaffold_769 . repeat_region 1218 6428 . ? . description=dust scaffold_769 . biological_region 7066 7067 0.999 + . logic_name=eponine scaffold_769 . biological_region 7068 7073 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_766 1 7904 scaffold_766 . repeat_region 951 6544 . ? . description=dust scaffold_766 ensembl protein_coding_gene 6544 7280 . + . ID=Physo126201;biotype=protein_coding;external_name=estExt_Genewise1.C_7660001;logic_name=jgi_physo1_1 scaffold_766 ensembl transcript 6544 7280 . + . ID=Physo126201;Parent=Physo126201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_766 . exon 6544 7280 . + . ID=Physo126201.1;Parent=Physo126201;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_766 . CDS 6756 7142 . + 0 ID=Physo126201;Parent=Physo126201;rank=1 scaffold_766 ensembl protein_coding_gene 7454 7774 . - . ID=Physo126202;biotype=protein_coding;external_name=estExt_Genewise1.C_7660002;logic_name=jgi_physo1_1 scaffold_766 ensembl transcript 7454 7774 . - . ID=Physo126202;Parent=Physo126202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_766 . exon 7454 7774 . - . ID=Physo126202.1;Parent=Physo126202;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_766 . CDS 7647 7772 . - 0 ID=Physo126202;Parent=Physo126202;rank=1 ##gff-version 3 ##sequence-region scaffold_799 1 7905 scaffold_799 . repeat_region 1322 2291 . ? . description=dust scaffold_799 . repeat_region 2312 2335 . ? . description=trf scaffold_799 . biological_region 2748 2750 0.999 + . logic_name=eponine scaffold_799 . biological_region 2893 2898 0.999 - . logic_name=eponine scaffold_799 . repeat_region 3102 3151 . ? . description=dust scaffold_799 . biological_region 3443 3446 0.999 + . logic_name=eponine scaffold_799 . repeat_region 3526 3597 . ? . description=trf scaffold_799 . biological_region 3947 3951 0.999 - . logic_name=eponine scaffold_799 . repeat_region 4743 6770 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_763 1 7906 scaffold_763 . biological_region 450 451 0.999 + . logic_name=eponine scaffold_763 . repeat_region 946 6720 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_759 1 7917 scaffold_759 . repeat_region 108 131 . ? . description=trf scaffold_759 . repeat_region 655 6288 . ? . description=dust scaffold_759 . biological_region 6667 6669 0.999 + . logic_name=eponine scaffold_759 . biological_region 6954 6959 0.999 + . logic_name=eponine scaffold_759 . biological_region 6976 6977 0.999 - . logic_name=eponine scaffold_759 . biological_region 7007 7012 0.999 - . logic_name=eponine scaffold_759 . biological_region 7302 7304 0.999 - . logic_name=eponine scaffold_759 . biological_region 7325 7327 0.999 - . logic_name=eponine scaffold_759 . biological_region 7325 7329 0.999 + . logic_name=eponine scaffold_759 . biological_region 7372 7373 0.999 - . logic_name=eponine scaffold_759 . biological_region 7442 7447 0.999 - . logic_name=eponine scaffold_759 ensembl protein_coding_gene 6468 7635 . + . ID=Physo145260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7590001;logic_name=jgi_physo1_1 scaffold_759 ensembl transcript 6468 7635 . + . ID=Physo145260;Parent=Physo145260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_759 . CDS 6468 6505 . + 0 ID=Physo145260;Parent=Physo145260;rank=1 scaffold_759 . exon 6468 6505 . + . ID=Physo145260.1;Parent=Physo145260;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_759 . CDS 6697 7491 . + 0 ID=Physo145260;Parent=Physo145260;rank=2 scaffold_759 . exon 6697 7491 . + . ID=Physo145260.2;Parent=Physo145260;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_759 . CDS 7522 7534 . + 0 ID=Physo145260;Parent=Physo145260;rank=3 scaffold_759 . exon 7522 7635 . + . ID=Physo145260.3;Parent=Physo145260;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_755 1 7921 scaffold_755 . repeat_region 1415 6545 . ? . description=dust scaffold_755 . repeat_region 7352 7362 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_757 1 7921 scaffold_757 . biological_region 704 710 0.999 - . logic_name=eponine scaffold_757 . repeat_region 1543 6479 . ? . description=dust scaffold_757 . biological_region 7237 7238 0.999 + . logic_name=eponine scaffold_757 ensembl protein_coding_gene 112 7687 . - . ID=Physo145259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7570001;logic_name=jgi_physo1_1 scaffold_757 ensembl transcript 112 7687 . - . ID=Physo145259;Parent=Physo145259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_757 . CDS 112 281 . - 0 ID=Physo145259;Parent=Physo145259;rank=4 scaffold_757 . exon 112 281 . - . ID=Physo145259.4;Parent=Physo145259;constitutive=1;ensembl_phase=1;rank=4 scaffold_757 . CDS 351 923 . - 0 ID=Physo145259;Parent=Physo145259;rank=3 scaffold_757 . exon 351 923 . - . ID=Physo145259.3;Parent=Physo145259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_757 . CDS 1069 1528 . - 0 ID=Physo145259;Parent=Physo145259;rank=2 scaffold_757 . exon 1069 1528 . - . ID=Physo145259.2;Parent=Physo145259;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_757 . CDS 6527 7687 . - 0 ID=Physo145259;Parent=Physo145259;rank=1 scaffold_757 . exon 6527 7687 . - . ID=Physo145259.1;Parent=Physo145259;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_758 1 7922 scaffold_758 . repeat_region 105 135 . ? . description=dust scaffold_758 . repeat_region 940 6409 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_753 1 7923 scaffold_753 . repeat_region 1197 7002 . ? . description=dust scaffold_753 . repeat_region 7196 7231 . ? . description=trf scaffold_753 . repeat_region 7233 7266 . ? . description=trf scaffold_753 . repeat_region 7306 7358 . ? . description=trf scaffold_753 . repeat_region 7306 7358 . ? . description=trf scaffold_753 . biological_region 7641 7643 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_795 1 7928 scaffold_795 . repeat_region 976 6482 . ? . description=dust scaffold_795 . biological_region 6537 6539 0.999 - . logic_name=eponine scaffold_795 ensembl protein_coding_gene 6543 7643 . - . ID=Physo109723;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_7950001;logic_name=jgi_physo1_1 scaffold_795 ensembl transcript 6543 7643 . - . ID=Physo109723;Parent=Physo109723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_795 . CDS 6543 7643 . - 0 ID=Physo109723;Parent=Physo109723;rank=1 scaffold_795 . exon 6543 7643 . - . ID=Physo109723.1;Parent=Physo109723;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_750 1 7939 scaffold_750 . biological_region 124 129 0.999 + . logic_name=eponine scaffold_750 . biological_region 159 160 0.999 + . logic_name=eponine scaffold_750 . biological_region 177 182 0.999 - . logic_name=eponine scaffold_750 . biological_region 467 469 0.999 - . logic_name=eponine scaffold_750 . repeat_region 973 6756 . ? . description=dust scaffold_750 . biological_region 6875 6875 0.999 + . logic_name=eponine scaffold_750 . biological_region 7165 7169 0.999 - . logic_name=eponine scaffold_750 ensembl protein_coding_gene 1 652 . - . ID=Physo145258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7500001;logic_name=jgi_physo1_1 scaffold_750 ensembl transcript 1 652 . - . ID=Physo145258;Parent=Physo145258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_750 . exon 1 395 . - . ID=Physo145258.2;Parent=Physo145258;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_750 . CDS 3 395 . - 0 ID=Physo145258;Parent=Physo145258;rank=2 scaffold_750 . CDS 644 652 . - 0 ID=Physo145258;Parent=Physo145258;rank=1 scaffold_750 . exon 644 652 . - . ID=Physo145258.1;Parent=Physo145258;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_744 1 7943 scaffold_744 . repeat_region 1542 3038 . ? . description=dust scaffold_744 . repeat_region 4113 6581 . ? . description=dust scaffold_744 ensembl protein_coding_gene 3852 4085 . - . ID=Physo126176;biotype=protein_coding;external_name=estExt_Genewise1.C_7440001;logic_name=jgi_physo1_1 scaffold_744 ensembl transcript 3852 4085 . - . ID=Physo126176;Parent=Physo126176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_744 . exon 3852 4085 . - . ID=Physo126176.1;Parent=Physo126176;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_744 . CDS 3976 4083 . - 0 ID=Physo126176;Parent=Physo126176;rank=1 ##gff-version 3 ##sequence-region scaffold_748 1 7944 scaffold_748 . repeat_region 1280 7154 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_776 1 7946 scaffold_776 . repeat_region 248 360 . + . description=Gypsy-1-LTR_PI scaffold_776 . repeat_region 370 775 . + . description=Gypsy-2-I_PI-int scaffold_776 . repeat_region 776 1744 . ? . description=dust scaffold_776 . repeat_region 3199 6464 . ? . description=dust scaffold_776 . repeat_region 6593 6627 . ? . description=dust scaffold_776 . repeat_region 6597 6627 . ? . description=trf scaffold_776 . repeat_region 7493 7556 . ? . description=dust scaffold_776 . repeat_region 7507 7534 . ? . description=trf scaffold_776 . repeat_region 7616 7793 . + . description=(CGA)n scaffold_776 . repeat_region 7746 7855 . ? . description=trf scaffold_776 . repeat_region 7746 7858 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_749 1 7954 scaffold_749 . biological_region 446 449 0.999 - . logic_name=eponine scaffold_749 . repeat_region 1209 1224 . ? . description=dust scaffold_749 . repeat_region 1306 3319 . ? . description=dust scaffold_749 . biological_region 3359 3362 0.999 + . logic_name=eponine scaffold_749 . biological_region 3465 3469 0.999 + . logic_name=eponine scaffold_749 . biological_region 3634 3636 0.999 - . logic_name=eponine scaffold_749 . biological_region 3654 3658 0.999 - . logic_name=eponine scaffold_749 . biological_region 3688 3692 0.999 + . logic_name=eponine scaffold_749 . biological_region 3710 3710 0.999 - . logic_name=eponine scaffold_749 . biological_region 3731 3732 0.999 + . logic_name=eponine scaffold_749 . biological_region 3737 3742 0.999 - . logic_name=eponine scaffold_749 . biological_region 3787 3791 0.999 - . logic_name=eponine scaffold_749 . biological_region 3901 3905 0.999 + . logic_name=eponine scaffold_749 . biological_region 3925 3930 0.999 + . logic_name=eponine scaffold_749 . biological_region 3931 3932 0.999 - . logic_name=eponine scaffold_749 . biological_region 3945 3951 0.999 + . logic_name=eponine scaffold_749 . biological_region 3964 3968 0.999 - . logic_name=eponine scaffold_749 . repeat_region 4048 6694 . ? . description=dust scaffold_749 ensembl protein_coding_gene 2 457 . + . ID=Physo126179;biotype=protein_coding;external_name=estExt_Genewise1.C_7490003;logic_name=jgi_physo1_1 scaffold_749 ensembl transcript 2 457 . + . ID=Physo126179;Parent=Physo126179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_749 . exon 2 457 . + . ID=Physo126179.1;Parent=Physo126179;constitutive=1;ensembl_phase=-1;rank=1 scaffold_749 . CDS 116 457 . + 0 ID=Physo126179;Parent=Physo126179;rank=1 scaffold_749 ensembl protein_coding_gene 6695 7954 . - . ID=Physo126182;biotype=protein_coding;external_name=estExt_Genewise1.C_7490006;logic_name=jgi_physo1_1 scaffold_749 ensembl transcript 6695 7954 . - . ID=Physo126182;Parent=Physo126182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_749 . exon 6695 7954 . - . ID=Physo126182.1;Parent=Physo126182;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_749 . CDS 6696 7898 . - 0 ID=Physo126182;Parent=Physo126182;rank=1 ##gff-version 3 ##sequence-region scaffold_747 1 7955 scaffold_747 . repeat_region 10 107 . + . description=Polinton-1_PI scaffold_747 . repeat_region 102 1141 . + . description=Polinton-1_PI scaffold_747 . repeat_region 1198 2708 . ? . description=dust scaffold_747 . repeat_region 3482 6497 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_740 1 7962 scaffold_740 . repeat_region 62 85 . ? . description=dust scaffold_740 . repeat_region 1124 6916 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_745 1 7962 scaffold_745 . repeat_region 1481 2406 . ? . description=dust scaffold_745 . repeat_region 3933 6362 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_739 1 7966 scaffold_739 . biological_region 880 884 0.999 - . logic_name=eponine scaffold_739 . repeat_region 1097 5864 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_738 1 7969 scaffold_738 . biological_region 1291 1295 0.999 + . logic_name=eponine scaffold_738 . repeat_region 1621 7159 . ? . description=dust scaffold_738 . biological_region 7461 7465 0.999 + . logic_name=eponine scaffold_738 . repeat_region 7535 7559 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_775 1 7969 scaffold_775 . repeat_region 902 910 . ? . description=dust scaffold_775 . repeat_region 955 6881 . ? . description=dust scaffold_775 ensembl protein_coding_gene 209 580 . + . ID=Physo145267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7750001;logic_name=jgi_physo1_1 scaffold_775 ensembl transcript 209 580 . + . ID=Physo145267;Parent=Physo145267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_775 . CDS 209 580 . + 0 ID=Physo145267;Parent=Physo145267;rank=1 scaffold_775 . exon 209 580 . + . ID=Physo145267.1;Parent=Physo145267;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_863 1 7971 scaffold_863 . biological_region 800 804 0.999 + . logic_name=eponine scaffold_863 . biological_region 806 809 0.999 - . logic_name=eponine scaffold_863 . biological_region 1607 1608 0.999 - . logic_name=eponine scaffold_863 . repeat_region 1689 7014 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_735 1 7978 scaffold_735 . repeat_region 733 775 . ? . description=dust scaffold_735 . repeat_region 733 775 . ? . description=trf scaffold_735 . repeat_region 733 813 . + . description=(CTTA)n scaffold_735 . repeat_region 1009 2922 . ? . description=dust scaffold_735 . repeat_region 3877 3918 . ? . description=dust scaffold_735 . repeat_region 3878 3918 . ? . description=trf scaffold_735 . repeat_region 3878 3918 . ? . description=trf scaffold_735 . repeat_region 4516 5477 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_731 1 7980 scaffold_731 . repeat_region 1170 6942 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_771 1 7984 scaffold_771 . repeat_region 1106 6812 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_733 1 7985 scaffold_733 . repeat_region 4723 4767 . ? . description=trf scaffold_733 . repeat_region 5195 5202 . ? . description=dust scaffold_733 . biological_region 6248 6252 0.999 - . logic_name=eponine scaffold_733 . repeat_region 6378 6391 . ? . description=dust scaffold_733 . biological_region 6784 6785 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_730 1 7986 scaffold_730 . biological_region 1768 1769 0.999 + . logic_name=eponine scaffold_730 . repeat_region 2056 3238 . ? . description=dust scaffold_730 . biological_region 3822 3823 0.999 + . logic_name=eponine scaffold_730 . biological_region 3871 3875 0.999 - . logic_name=eponine scaffold_730 . repeat_region 4397 7131 . ? . description=dust scaffold_730 . biological_region 7301 7302 0.999 + . logic_name=eponine scaffold_730 . repeat_region 7521 7556 . ? . description=trf scaffold_730 . repeat_region 7617 7669 . ? . description=trf scaffold_730 . repeat_region 7617 7669 . ? . description=trf scaffold_730 ensembl protein_coding_gene 324 1925 . + . ID=Physo109720;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_7300001;logic_name=jgi_physo1_1 scaffold_730 ensembl transcript 324 1925 . + . ID=Physo109720;Parent=Physo109720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_730 . CDS 324 1925 . + 0 ID=Physo109720;Parent=Physo109720;rank=1 scaffold_730 . exon 324 1925 . + . ID=Physo109720.1;Parent=Physo109720;constitutive=1;rank=1 scaffold_730 ensembl protein_coding_gene 3280 7458 . + . ID=Physo145255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7300002;logic_name=jgi_physo1_1 scaffold_730 ensembl transcript 3280 7458 . + . ID=Physo145255;Parent=Physo145255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_730 . CDS 3280 4356 . + 0 ID=Physo145255;Parent=Physo145255;rank=1 scaffold_730 . exon 3280 4356 . + . ID=Physo145255.1;Parent=Physo145255;constitutive=1;rank=1 scaffold_730 . CDS 7135 7458 . + 0 ID=Physo145255;Parent=Physo145255;rank=2 scaffold_730 . exon 7135 7458 . + . ID=Physo145255.2;Parent=Physo145255;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_729 1 7987 scaffold_729 . repeat_region 520 583 . ? . description=trf scaffold_729 . repeat_region 1021 6820 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_761 1 7993 scaffold_761 . repeat_region 617 808 . ? . description=trf scaffold_761 . repeat_region 879 6572 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_828 1 8001 scaffold_828 . repeat_region 713 6436 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_724 1 8005 scaffold_724 . repeat_region 710 742 . ? . description=dust scaffold_724 . repeat_region 714 742 . ? . description=trf scaffold_724 . biological_region 929 929 0.999 + . logic_name=eponine scaffold_724 . repeat_region 1292 2392 . ? . description=dust scaffold_724 . repeat_region 3386 6988 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_727 1 8009 scaffold_727 . repeat_region 1122 6945 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_726 1 8010 scaffold_726 . repeat_region 1114 6319 . ? . description=dust scaffold_726 . repeat_region 6642 6649 . ? . description=dust scaffold_726 ensembl protein_coding_gene 6672 7636 . - . ID=Physo145253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7260001;logic_name=jgi_physo1_1 scaffold_726 ensembl transcript 6672 7636 . - . ID=Physo145253;Parent=Physo145253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_726 . CDS 6672 6676 . - 0 ID=Physo145253;Parent=Physo145253;rank=2 scaffold_726 . exon 6672 6676 . - . ID=Physo145253.2;Parent=Physo145253;constitutive=1;ensembl_phase=1;rank=2 scaffold_726 . CDS 6706 7636 . - 0 ID=Physo145253;Parent=Physo145253;rank=1 scaffold_726 . exon 6706 7636 . - . ID=Physo145253.1;Parent=Physo145253;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_725 1 8014 scaffold_725 . biological_region 110 117 0.999 + . logic_name=eponine scaffold_725 . biological_region 199 203 0.999 + . logic_name=eponine scaffold_725 . biological_region 680 683 0.999 - . logic_name=eponine scaffold_725 . biological_region 697 697 0.999 + . logic_name=eponine scaffold_725 . biological_region 733 740 0.999 + . logic_name=eponine scaffold_725 . repeat_region 1135 6918 . ? . description=dust scaffold_725 . repeat_region 7096 7103 . ? . description=dust scaffold_725 . repeat_region 7809 7832 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_720 1 8025 scaffold_720 . repeat_region 1214 7082 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_719 1 8026 scaffold_719 . repeat_region 1413 7081 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_717 1 8027 scaffold_717 . biological_region 282 285 0.999 - . logic_name=eponine scaffold_717 . biological_region 297 303 0.999 + . logic_name=eponine scaffold_717 . biological_region 338 339 0.999 + . logic_name=eponine scaffold_717 . biological_region 368 374 0.999 + . logic_name=eponine scaffold_717 . biological_region 392 395 0.999 - . logic_name=eponine scaffold_717 . biological_region 897 901 0.999 + . logic_name=eponine scaffold_717 . repeat_region 922 967 . ? . description=trf scaffold_717 . biological_region 923 930 0.999 + . logic_name=eponine scaffold_717 . repeat_region 970 1006 . ? . description=trf scaffold_717 . repeat_region 1297 6812 . ? . description=dust scaffold_717 . repeat_region 6831 7060 . ? . description=trf scaffold_717 . biological_region 6864 6872 0.999 + . logic_name=eponine scaffold_717 . biological_region 6896 6903 0.999 + . logic_name=eponine scaffold_717 . biological_region 6961 6964 0.999 + . logic_name=eponine scaffold_717 . biological_region 7662 7663 0.999 - . logic_name=eponine scaffold_717 . biological_region 7669 7674 0.999 + . logic_name=eponine scaffold_717 . biological_region 7755 7759 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_718 1 8027 scaffold_718 . biological_region 874 877 0.999 - . logic_name=eponine scaffold_718 . biological_region 900 903 0.999 - . logic_name=eponine scaffold_718 . repeat_region 1332 6977 . ? . description=dust scaffold_718 ensembl protein_coding_gene 7591 7809 . - . ID=Physo126156;biotype=protein_coding;external_name=estExt_Genewise1.C_7180001;logic_name=jgi_physo1_1 scaffold_718 ensembl transcript 7591 7809 . - . ID=Physo126156;Parent=Physo126156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_718 . CDS 7591 7743 . - 0 ID=Physo126156;Parent=Physo126156;rank=1 scaffold_718 . exon 7591 7809 . - . ID=Physo126156.1;Parent=Physo126156;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_715 1 8028 scaffold_715 . repeat_region 366 430 . ? . description=trf scaffold_715 . repeat_region 612 686 . ? . description=dust scaffold_715 . repeat_region 628 690 . ? . description=trf scaffold_715 . repeat_region 700 734 . ? . description=trf scaffold_715 . repeat_region 811 876 . ? . description=trf scaffold_715 . biological_region 1024 1027 0.999 + . logic_name=eponine scaffold_715 . repeat_region 1200 1228 . ? . description=trf scaffold_715 . repeat_region 1458 7116 . ? . description=dust scaffold_715 . biological_region 7171 7175 0.999 - . logic_name=eponine scaffold_715 . biological_region 7227 7230 0.999 + . logic_name=eponine scaffold_715 . repeat_region 7296 7343 . ? . description=trf scaffold_715 . repeat_region 7383 7453 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_737 1 8028 scaffold_737 . repeat_region 819 6335 . ? . description=dust scaffold_737 . repeat_region 6912 8028 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_713 1 8030 scaffold_713 . biological_region 652 658 0.999 + . logic_name=eponine scaffold_713 . biological_region 1864 1865 0.999 + . logic_name=eponine scaffold_713 . biological_region 1883 1883 0.999 - . logic_name=eponine scaffold_713 . repeat_region 2330 3154 . ? . description=dust scaffold_713 . repeat_region 4399 5316 . ? . description=dust scaffold_713 . repeat_region 6349 6376 . ? . description=trf scaffold_713 . repeat_region 7174 7209 . ? . description=trf scaffold_713 . repeat_region 7270 7322 . ? . description=trf scaffold_713 . repeat_region 7270 7322 . ? . description=trf scaffold_713 ensembl protein_coding_gene 3245 5849 . + . ID=Physo145249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7130001;logic_name=jgi_physo1_1 scaffold_713 ensembl transcript 3245 5849 . + . ID=Physo145249;Parent=Physo145249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_713 . CDS 3245 3904 . + 0 ID=Physo145249;Parent=Physo145249;rank=1 scaffold_713 . exon 3245 3904 . + . ID=Physo145249.1;Parent=Physo145249;constitutive=1;rank=1 scaffold_713 . CDS 3989 4360 . + 0 ID=Physo145249;Parent=Physo145249;rank=2 scaffold_713 . exon 3989 4360 . + . ID=Physo145249.2;Parent=Physo145249;constitutive=1;rank=2 scaffold_713 . CDS 5349 5849 . + 0 ID=Physo145249;Parent=Physo145249;rank=3 scaffold_713 . exon 5349 5849 . + . ID=Physo145249.3;Parent=Physo145249;constitutive=1;rank=3 scaffold_713 ensembl protein_coding_gene 7469 8005 . + . ID=Physo145250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7130002;logic_name=jgi_physo1_1 scaffold_713 ensembl transcript 7469 8005 . + . ID=Physo145250;Parent=Physo145250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_713 . CDS 7469 8005 . + 0 ID=Physo145250;Parent=Physo145250;rank=1 scaffold_713 . exon 7469 8005 . + . ID=Physo145250.1;Parent=Physo145250;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_714 1 8030 scaffold_714 . repeat_region 1023 6565 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_716 1 8030 scaffold_716 . repeat_region 52 60 . ? . description=dust scaffold_716 . repeat_region 1333 7155 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_709 1 8031 scaffold_709 . repeat_region 468 487 . ? . description=trf scaffold_709 . biological_region 660 663 0.999 - . logic_name=eponine scaffold_709 . repeat_region 747 757 . ? . description=dust scaffold_709 . biological_region 1143 1144 0.999 + . logic_name=eponine scaffold_709 . repeat_region 1293 2803 . ? . description=dust scaffold_709 . repeat_region 3680 6519 . ? . description=dust scaffold_709 . biological_region 6731 6735 0.999 - . logic_name=eponine scaffold_709 ensembl protein_coding_gene 1017 1292 . + . ID=Physo126145;biotype=protein_coding;external_name=estExt_Genewise1.C_7090002;logic_name=jgi_physo1_1 scaffold_709 ensembl transcript 1017 1292 . + . ID=Physo126145;Parent=Physo126145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_709 . exon 1017 1292 . + . ID=Physo126145.1;Parent=Physo126145;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_709 . CDS 1019 1291 . + 0 ID=Physo126145;Parent=Physo126145;rank=1 scaffold_709 ensembl protein_coding_gene 6601 7284 . + . ID=Physo145246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7090001;logic_name=jgi_physo1_1 scaffold_709 ensembl transcript 6601 7284 . + . ID=Physo145246;Parent=Physo145246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_709 . CDS 6601 7284 . + 0 ID=Physo145246;Parent=Physo145246;rank=1 scaffold_709 . exon 6601 7284 . + . ID=Physo145246.1;Parent=Physo145246;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_708 1 8033 scaffold_708 . repeat_region 817 6057 . ? . description=dust scaffold_708 . biological_region 7582 7584 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_707 1 8042 scaffold_707 . repeat_region 1151 6778 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_770 1 8042 scaffold_770 . repeat_region 1393 6961 . ? . description=dust scaffold_770 . biological_region 7039 7041 0.999 + . logic_name=eponine scaffold_770 . repeat_region 7815 7835 . ? . description=trf scaffold_770 . biological_region 7817 7820 0.999 - . logic_name=eponine scaffold_770 . biological_region 7828 7832 0.999 + . logic_name=eponine scaffold_770 . biological_region 7843 7845 0.999 - . logic_name=eponine scaffold_770 . biological_region 7857 7857 0.999 + . logic_name=eponine scaffold_770 . biological_region 7892 7896 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_722 1 8043 scaffold_722 . repeat_region 652 810 . ? . description=trf scaffold_722 . repeat_region 1015 1070 . ? . description=trf scaffold_722 . repeat_region 1142 6577 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_705 1 8047 scaffold_705 . repeat_region 1617 2946 . ? . description=dust scaffold_705 . repeat_region 2969 3007 . ? . description=trf scaffold_705 . repeat_region 3999 6897 . ? . description=dust scaffold_705 ensembl protein_coding_gene 7691 7792 . - . ID=Physo126141;biotype=protein_coding;external_name=estExt_Genewise1.C_7050001;logic_name=jgi_physo1_1 scaffold_705 ensembl transcript 7691 7792 . - . ID=Physo126141;Parent=Physo126141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_705 . CDS 7691 7738 . - 0 ID=Physo126141;Parent=Physo126141;rank=1 scaffold_705 . exon 7691 7792 . - . ID=Physo126141.1;Parent=Physo126141;constitutive=1;ensembl_phase=-1;rank=1 scaffold_705 ensembl protein_coding_gene 513 674 . + . ID=Physo126142;biotype=protein_coding;external_name=estExt_Genewise1.C_7050002;logic_name=jgi_physo1_1 scaffold_705 ensembl transcript 513 674 . + . ID=Physo126142;Parent=Physo126142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_705 . exon 513 674 . + . ID=Physo126142.1;Parent=Physo126142;constitutive=1;ensembl_phase=-1;rank=1 scaffold_705 . CDS 528 674 . + 0 ID=Physo126142;Parent=Physo126142;rank=1 ##gff-version 3 ##sequence-region scaffold_704 1 8050 scaffold_704 . repeat_region 1434 6645 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_710 1 8052 scaffold_710 . repeat_region 1285 7065 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_765 1 8054 scaffold_765 . biological_region 501 503 0.999 + . logic_name=eponine scaffold_765 . repeat_region 753 6601 . ? . description=dust scaffold_765 . repeat_region 7855 7870 . ? . description=dust scaffold_765 ensembl protein_coding_gene 6 342 . + . ID=Physo126196;biotype=protein_coding;external_name=estExt_Genewise1.C_7650001;logic_name=jgi_physo1_1 scaffold_765 ensembl transcript 6 342 . + . ID=Physo126196;Parent=Physo126196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_765 . exon 6 342 . + . ID=Physo126196.1;Parent=Physo126196;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_765 . CDS 42 341 . + 0 ID=Physo126196;Parent=Physo126196;rank=1 ##gff-version 3 ##sequence-region scaffold_693 1 8055 scaffold_693 . biological_region 728 731 0.999 - . logic_name=eponine scaffold_693 . repeat_region 1136 7026 . ? . description=dust scaffold_693 . repeat_region 7212 7260 . ? . description=trf scaffold_693 . repeat_region 7718 7776 . ? . description=trf scaffold_693 . repeat_region 7718 7776 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_703 1 8057 scaffold_703 . repeat_region 1 1533 . - . description=GypsyPi-1c_I-int scaffold_703 . biological_region 649 650 0.999 + . logic_name=eponine scaffold_703 . repeat_region 1590 3209 . ? . description=dust scaffold_703 . repeat_region 3216 3947 . - . description=GypsyPi-1c_I-int scaffold_703 . biological_region 3443 3446 0.999 - . logic_name=eponine scaffold_703 . biological_region 3703 3704 0.999 - . logic_name=eponine scaffold_703 . repeat_region 3948 4114 . - . description=GypsyPi-1c_LTR scaffold_703 . repeat_region 4120 6872 . ? . description=dust scaffold_703 ensembl protein_coding_gene 6873 7564 . + . ID=Physo109717;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_7030001;logic_name=jgi_physo1_1 scaffold_703 ensembl transcript 6873 7564 . + . ID=Physo109717;Parent=Physo109717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_703 . exon 6873 7564 . + . ID=Physo109717.1;Parent=Physo109717;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_703 . CDS 6875 7327 . + 0 ID=Physo109717;Parent=Physo109717;rank=1 scaffold_703 ensembl protein_coding_gene 18 1297 . - . ID=Physo145243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7030001;logic_name=jgi_physo1_1 scaffold_703 ensembl transcript 18 1297 . - . ID=Physo145243;Parent=Physo145243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_703 . exon 18 1093 . - . ID=Physo145243.2;Parent=Physo145243;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_703 . CDS 20 1093 . - 0 ID=Physo145243;Parent=Physo145243;rank=2 scaffold_703 . CDS 1115 1297 . - 0 ID=Physo145243;Parent=Physo145243;rank=1 scaffold_703 . exon 1115 1297 . - . ID=Physo145243.1;Parent=Physo145243;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_762 1 8058 scaffold_762 . repeat_region 1729 7245 . ? . description=dust scaffold_762 . repeat_region 7246 8058 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_702 1 8060 scaffold_702 . repeat_region 693 4154 . ? . description=dust scaffold_702 . repeat_region 4337 4344 . ? . description=dust scaffold_702 . repeat_region 4541 4552 . ? . description=dust scaffold_702 . repeat_region 4911 6373 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_695 1 8065 scaffold_695 . repeat_region 1127 6910 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_698 1 8065 scaffold_698 . repeat_region 1351 4392 . ? . description=dust scaffold_698 . biological_region 4718 4723 0.999 + . logic_name=eponine scaffold_698 . biological_region 4740 4741 0.999 - . logic_name=eponine scaffold_698 . biological_region 4771 4776 0.999 - . logic_name=eponine scaffold_698 . biological_region 5065 5067 0.999 - . logic_name=eponine scaffold_698 . biological_region 5088 5092 0.999 + . logic_name=eponine scaffold_698 . biological_region 5132 5137 0.999 - . logic_name=eponine scaffold_698 . biological_region 5204 5211 0.999 - . logic_name=eponine scaffold_698 . repeat_region 5620 6584 . ? . description=dust scaffold_698 . repeat_region 7250 7314 . ? . description=trf scaffold_698 ensembl protein_coding_gene 4567 5297 . + . ID=Physo145241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6980001;logic_name=jgi_physo1_1 scaffold_698 ensembl transcript 4567 5297 . + . ID=Physo145241;Parent=Physo145241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_698 . exon 4567 4886 . + . ID=Physo145241.1;Parent=Physo145241;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_698 . CDS 4645 4886 . + 0 ID=Physo145241;Parent=Physo145241;rank=1 scaffold_698 . CDS 4953 5007 . + 0 ID=Physo145241;Parent=Physo145241;rank=2 scaffold_698 . exon 4953 5007 . + . ID=Physo145241.2;Parent=Physo145241;constitutive=1;ensembl_phase=2;rank=2 scaffold_698 . CDS 5049 5254 . + 0 ID=Physo145241;Parent=Physo145241;rank=3 scaffold_698 . exon 5049 5254 . + . ID=Physo145241.3;Parent=Physo145241;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_698 . CDS 5285 5297 . + 0 ID=Physo145241;Parent=Physo145241;rank=4 scaffold_698 . exon 5285 5297 . + . ID=Physo145241.4;Parent=Physo145241;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_723 1 8065 scaffold_723 . repeat_region 1388 2407 . ? . description=dust scaffold_723 . repeat_region 3693 7251 . ? . description=dust scaffold_723 ensembl protein_coding_gene 372 1316 . - . ID=Physo109719;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_7230001;logic_name=jgi_physo1_1 scaffold_723 ensembl transcript 372 1316 . - . ID=Physo109719;Parent=Physo109719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_723 . CDS 372 1316 . - 0 ID=Physo109719;Parent=Physo109719;rank=1 scaffold_723 . exon 372 1316 . - . ID=Physo109719.1;Parent=Physo109719;constitutive=1;rank=1 scaffold_723 ensembl protein_coding_gene 2411 3027 . - . ID=Physo145252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7230002;logic_name=jgi_physo1_1 scaffold_723 ensembl transcript 2411 3027 . - . ID=Physo145252;Parent=Physo145252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_723 . exon 2411 3027 . - . ID=Physo145252.1;Parent=Physo145252;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_723 . CDS 2413 3027 . - 0 ID=Physo145252;Parent=Physo145252;rank=1 ##gff-version 3 ##sequence-region scaffold_696 1 8066 scaffold_696 . repeat_region 3678 3685 . ? . description=dust scaffold_696 . repeat_region 4908 5970 . ? . description=dust scaffold_696 . biological_region 6986 6990 0.999 + . logic_name=eponine scaffold_696 . biological_region 7017 7019 0.999 - . logic_name=eponine scaffold_696 . repeat_region 7312 7336 . ? . description=trf scaffold_696 . biological_region 7723 7725 0.999 + . logic_name=eponine scaffold_696 ensembl protein_coding_gene 3046 4192 . - . ID=Physo145236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6960001;logic_name=jgi_physo1_1 scaffold_696 ensembl transcript 3046 4192 . - . ID=Physo145236;Parent=Physo145236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_696 . exon 3046 3660 . - . ID=Physo145236.2;Parent=Physo145236;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_696 . CDS 3081 3660 . - 0 ID=Physo145236;Parent=Physo145236;rank=2 scaffold_696 . CDS 3738 4192 . - 0 ID=Physo145236;Parent=Physo145236;rank=1 scaffold_696 . exon 3738 4192 . - . ID=Physo145236.1;Parent=Physo145236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_696 ensembl protein_coding_gene 5971 7267 . - . ID=Physo145237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6960002;logic_name=jgi_physo1_1 scaffold_696 ensembl transcript 5971 7267 . - . ID=Physo145237;Parent=Physo145237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_696 . exon 5971 6020 . - . ID=Physo145237.3;Parent=Physo145237;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_696 . CDS 5972 6020 . - 0 ID=Physo145237;Parent=Physo145237;rank=3 scaffold_696 . CDS 6098 6188 . - 0 ID=Physo145237;Parent=Physo145237;rank=2 scaffold_696 . exon 6098 6188 . - . ID=Physo145237.2;Parent=Physo145237;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_696 . CDS 6454 7267 . - 0 ID=Physo145237;Parent=Physo145237;rank=1 scaffold_696 . exon 6454 7267 . - . ID=Physo145237.1;Parent=Physo145237;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_696 ensembl protein_coding_gene 7527 8066 . + . ID=Physo145238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6960003;logic_name=jgi_physo1_1 scaffold_696 ensembl transcript 7527 8066 . + . ID=Physo145238;Parent=Physo145238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_696 . CDS 7527 8066 . + 0 ID=Physo145238;Parent=Physo145238;rank=1 scaffold_696 . exon 7527 8066 . + . ID=Physo145238.1;Parent=Physo145238;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_721 1 8067 scaffold_721 . repeat_region 820 869 . ? . description=dust scaffold_721 . repeat_region 1557 7042 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_537 1 8074 scaffold_537 . biological_region 639 645 0.999 + . logic_name=eponine scaffold_537 . repeat_region 713 762 . ? . description=dust scaffold_537 . repeat_region 792 881 . ? . description=trf scaffold_537 . biological_region 2212 2214 0.999 + . logic_name=eponine scaffold_537 . repeat_region 2294 2826 . ? . description=dust scaffold_537 . biological_region 5113 5113 0.999 + . logic_name=eponine scaffold_537 . biological_region 6790 6797 0.999 - . logic_name=eponine scaffold_537 . biological_region 6819 6823 0.999 - . logic_name=eponine scaffold_537 . biological_region 7325 7328 0.999 + . logic_name=eponine scaffold_537 . biological_region 7346 7352 0.999 - . logic_name=eponine scaffold_537 . biological_region 7381 7382 0.999 - . logic_name=eponine scaffold_537 . biological_region 7417 7423 0.999 - . logic_name=eponine scaffold_537 . biological_region 7435 7438 0.999 + . logic_name=eponine scaffold_537 ensembl protein_coding_gene 2884 4301 . - . ID=Physo145150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5370001;logic_name=jgi_physo1_1 scaffold_537 ensembl transcript 2884 4301 . - . ID=Physo145150;Parent=Physo145150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_537 . CDS 2884 2932 . - 0 ID=Physo145150;Parent=Physo145150;rank=3 scaffold_537 . exon 2884 2932 . - . ID=Physo145150.3;Parent=Physo145150;constitutive=1;ensembl_phase=2;rank=3 scaffold_537 . CDS 2973 4246 . - 0 ID=Physo145150;Parent=Physo145150;rank=2 scaffold_537 . exon 2973 4246 . - . ID=Physo145150.2;Parent=Physo145150;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_537 . CDS 4293 4301 . - 0 ID=Physo145150;Parent=Physo145150;rank=1 scaffold_537 . exon 4293 4301 . - . ID=Physo145150.1;Parent=Physo145150;constitutive=1;rank=1 scaffold_537 ensembl protein_coding_gene 7500 8054 . - . ID=Physo145151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5370002;logic_name=jgi_physo1_1 scaffold_537 ensembl transcript 7500 8054 . - . ID=Physo145151;Parent=Physo145151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_537 . CDS 7500 8054 . - 0 ID=Physo145151;Parent=Physo145151;rank=1 scaffold_537 . exon 7500 8054 . - . ID=Physo145151.1;Parent=Physo145151;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_833 1 8077 scaffold_833 . repeat_region 3 976 . + . description=Polinton-1_PI scaffold_833 . repeat_region 792 799 . ? . description=dust scaffold_833 . repeat_region 1496 6957 . ? . description=dust scaffold_833 . repeat_region 6958 8051 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_689 1 8080 scaffold_689 . repeat_region 1006 6822 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_685 1 8081 scaffold_685 . repeat_region 916 923 . ? . description=dust scaffold_685 . repeat_region 999 6683 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_781 1 8086 scaffold_781 . repeat_region 1383 2514 . ? . description=dust scaffold_781 . repeat_region 4071 7364 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_687 1 8087 scaffold_687 . repeat_region 1495 6909 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_694 1 8087 scaffold_694 . repeat_region 1314 1330 . ? . description=dust scaffold_694 . repeat_region 1466 6967 . ? . description=dust scaffold_694 . repeat_region 7463 7499 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_821 1 8087 scaffold_821 . repeat_region 568 577 . ? . description=dust scaffold_821 . repeat_region 1307 6652 . ? . description=dust scaffold_821 . biological_region 6886 6887 0.999 + . logic_name=eponine scaffold_821 . biological_region 7568 7569 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_688 1 8089 scaffold_688 . repeat_region 1155 4163 . ? . description=dust scaffold_688 . repeat_region 5383 5431 . ? . description=trf scaffold_688 . repeat_region 5958 5965 . ? . description=dust scaffold_688 . repeat_region 6650 6941 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_686 1 8092 scaffold_686 . repeat_region 1579 1681 . ? . description=trf scaffold_686 . repeat_region 2863 6992 . ? . description=dust scaffold_686 . repeat_region 7072 7084 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_732 1 8093 scaffold_732 . repeat_region 361 381 . ? . description=dust scaffold_732 . repeat_region 879 6760 . ? . description=dust scaffold_732 . repeat_region 6889 6925 . ? . description=dust scaffold_732 . repeat_region 6962 6984 . ? . description=dust scaffold_732 . repeat_region 7959 7967 . ? . description=dust scaffold_732 . repeat_region 7963 8023 . ? . description=trf scaffold_732 . repeat_region 7968 8011 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_706 1 8094 scaffold_706 . repeat_region 1330 6823 . ? . description=dust scaffold_706 ensembl protein_coding_gene 7066 8005 . - . ID=Physo145245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7060001;logic_name=jgi_physo1_1 scaffold_706 ensembl transcript 7066 8005 . - . ID=Physo145245;Parent=Physo145245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_706 . CDS 7066 7074 . - 0 ID=Physo145245;Parent=Physo145245;rank=4 scaffold_706 . exon 7066 7074 . - . ID=Physo145245.4;Parent=Physo145245;constitutive=1;rank=4 scaffold_706 . CDS 7106 7371 . - 0 ID=Physo145245;Parent=Physo145245;rank=3 scaffold_706 . exon 7106 7371 . - . ID=Physo145245.3;Parent=Physo145245;constitutive=1;ensembl_phase=1;rank=3 scaffold_706 . CDS 7465 7600 . - 0 ID=Physo145245;Parent=Physo145245;rank=2 scaffold_706 . exon 7465 7600 . - . ID=Physo145245.2;Parent=Physo145245;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_706 . CDS 7721 8005 . - 0 ID=Physo145245;Parent=Physo145245;rank=1 scaffold_706 . exon 7721 8005 . - . ID=Physo145245.1;Parent=Physo145245;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_684 1 8101 scaffold_684 . repeat_region 592 611 . ? . description=trf scaffold_684 . repeat_region 592 614 . ? . description=dust scaffold_684 . repeat_region 1139 3598 . ? . description=dust scaffold_684 . biological_region 5155 5158 0.999 + . logic_name=eponine scaffold_684 . biological_region 5196 5198 0.999 + . logic_name=eponine scaffold_684 . repeat_region 5258 6661 . ? . description=dust scaffold_684 . biological_region 6743 6745 0.999 - . logic_name=eponine scaffold_684 ensembl protein_coding_gene 6879 7914 . - . ID=Physo126120;biotype=protein_coding;external_name=estExt_Genewise1.C_6840001;logic_name=jgi_physo1_1 scaffold_684 ensembl transcript 6879 7914 . - . ID=Physo126120;Parent=Physo126120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_684 . exon 6879 7914 . - . ID=Physo126120.1;Parent=Physo126120;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_684 . CDS 6881 7345 . - 0 ID=Physo126120;Parent=Physo126120;rank=1 scaffold_684 ensembl protein_coding_gene 262 995 . + . ID=Physo126121;biotype=protein_coding;external_name=estExt_Genewise1.C_6840002;logic_name=jgi_physo1_1 scaffold_684 ensembl transcript 262 995 . + . ID=Physo126121;Parent=Physo126121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_684 . exon 262 587 . + . ID=Physo126121.1;Parent=Physo126121;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_684 . CDS 442 587 . + 0 ID=Physo126121;Parent=Physo126121;rank=1 scaffold_684 . CDS 792 939 . + 0 ID=Physo126121;Parent=Physo126121;rank=2 scaffold_684 . exon 792 995 . + . ID=Physo126121.2;Parent=Physo126121;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_682 1 8122 scaffold_682 . repeat_region 14 334 . - . description=GypsyPi-1c_I-int scaffold_682 . biological_region 676 677 0.999 - . logic_name=eponine scaffold_682 . biological_region 826 828 0.999 - . logic_name=eponine scaffold_682 . biological_region 864 866 0.999 + . logic_name=eponine scaffold_682 . biological_region 882 883 0.999 + . logic_name=eponine scaffold_682 . biological_region 1072 1076 0.999 + . logic_name=eponine scaffold_682 . biological_region 1092 1098 0.999 - . logic_name=eponine scaffold_682 . biological_region 1564 1565 0.999 - . logic_name=eponine scaffold_682 . biological_region 5172 5178 0.999 + . logic_name=eponine scaffold_682 . repeat_region 5344 5427 . ? . description=trf scaffold_682 . repeat_region 5369 5677 . ? . description=trf scaffold_682 . repeat_region 5389 5637 . ? . description=trf scaffold_682 . biological_region 5670 5672 0.999 - . logic_name=eponine scaffold_682 . repeat_region 6668 6740 . ? . description=trf scaffold_682 . repeat_region 6832 6922 . ? . description=trf scaffold_682 . repeat_region 6834 6941 . ? . description=trf scaffold_682 ensembl protein_coding_gene 1679 1969 . - . ID=Physo126118;biotype=protein_coding;external_name=estExt_Genewise1.C_6820001;logic_name=jgi_physo1_1 scaffold_682 ensembl transcript 1679 1969 . - . ID=Physo126118;Parent=Physo126118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_682 . CDS 1679 1825 . - 0 ID=Physo126118;Parent=Physo126118;rank=1 scaffold_682 . exon 1679 1969 . - . ID=Physo126118.1;Parent=Physo126118;constitutive=1;ensembl_phase=-1;rank=1 scaffold_682 ensembl protein_coding_gene 2597 2782 . - . ID=Physo126119;biotype=protein_coding;external_name=estExt_Genewise1.C_6820002;logic_name=jgi_physo1_1 scaffold_682 ensembl transcript 2597 2782 . - . ID=Physo126119;Parent=Physo126119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_682 . CDS 2597 2764 . - 0 ID=Physo126119;Parent=Physo126119;rank=1 scaffold_682 . exon 2597 2782 . - . ID=Physo126119.1;Parent=Physo126119;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_681 1 8123 scaffold_681 . repeat_region 1413 1436 . ? . description=trf scaffold_681 . repeat_region 1717 2565 . ? . description=dust scaffold_681 . biological_region 2616 2618 0.999 + . logic_name=eponine scaffold_681 . biological_region 2903 2908 0.999 + . logic_name=eponine scaffold_681 . biological_region 2925 2926 0.999 - . logic_name=eponine scaffold_681 . biological_region 2956 2961 0.999 - . logic_name=eponine scaffold_681 . biological_region 3251 3252 0.999 - . logic_name=eponine scaffold_681 . biological_region 3274 3277 0.999 + . logic_name=eponine scaffold_681 . biological_region 3390 3397 0.999 - . logic_name=eponine scaffold_681 . repeat_region 3901 6608 . ? . description=dust scaffold_681 . biological_region 7511 7518 0.999 + . logic_name=eponine scaffold_681 . biological_region 7529 7535 0.999 + . logic_name=eponine scaffold_681 . biological_region 7608 7620 0.999 + . logic_name=eponine scaffold_681 . biological_region 7637 7640 0.999 + . logic_name=eponine scaffold_681 . biological_region 7663 7667 0.999 + . logic_name=eponine scaffold_681 . biological_region 7678 7683 0.999 - . logic_name=eponine scaffold_681 . biological_region 7721 7726 0.999 + . logic_name=eponine scaffold_681 . biological_region 7741 7746 0.999 - . logic_name=eponine scaffold_681 . biological_region 7774 7779 0.999 - . logic_name=eponine scaffold_681 . biological_region 8069 8070 0.999 - . logic_name=eponine scaffold_681 ensembl protein_coding_gene 2752 3584 . + . ID=Physo126111;biotype=protein_coding;external_name=estExt_Genewise1.C_6810002;logic_name=jgi_physo1_1 scaffold_681 ensembl transcript 2752 3584 . + . ID=Physo126111;Parent=Physo126111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_681 . exon 2752 3584 . + . ID=Physo126111.1;Parent=Physo126111;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_681 . CDS 2830 3483 . + 0 ID=Physo126111;Parent=Physo126111;rank=1 scaffold_681 ensembl protein_coding_gene 993 1484 . - . ID=Physo145233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6810001;logic_name=jgi_physo1_1 scaffold_681 ensembl transcript 993 1484 . - . ID=Physo145233;Parent=Physo145233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_681 . CDS 993 1200 . - 0 ID=Physo145233;Parent=Physo145233;rank=3 scaffold_681 . exon 993 1200 . - . ID=Physo145233.3;Parent=Physo145233;constitutive=1;ensembl_phase=2;rank=3 scaffold_681 . CDS 1242 1303 . - 0 ID=Physo145233;Parent=Physo145233;rank=2 scaffold_681 . exon 1242 1303 . - . ID=Physo145233.2;Parent=Physo145233;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_681 . CDS 1365 1484 . - 0 ID=Physo145233;Parent=Physo145233;rank=1 scaffold_681 . exon 1365 1484 . - . ID=Physo145233.1;Parent=Physo145233;constitutive=1;rank=1 scaffold_681 ensembl protein_coding_gene 7181 8123 . + . ID=Physo145235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6810003;logic_name=jgi_physo1_1 scaffold_681 ensembl transcript 7181 8123 . + . ID=Physo145235;Parent=Physo145235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_681 . CDS 7181 7183 . + 0 ID=Physo145235;Parent=Physo145235;rank=1 scaffold_681 . exon 7181 7183 . + . ID=Physo145235.1;Parent=Physo145235;constitutive=1;rank=1 scaffold_681 . CDS 7558 8121 . + 0 ID=Physo145235;Parent=Physo145235;rank=2 scaffold_681 . exon 7558 8123 . + . ID=Physo145235.2;Parent=Physo145235;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_678 1 8140 scaffold_678 . repeat_region 780 4316 . ? . description=dust scaffold_678 . repeat_region 4558 5429 . + . description=Gypsy-2-I_PI-int scaffold_678 . repeat_region 5452 6840 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_676 1 8142 scaffold_676 . repeat_region 671 812 . ? . description=trf scaffold_676 . repeat_region 964 6918 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_673 1 8146 scaffold_673 . repeat_region 1162 1994 . ? . description=dust scaffold_673 . repeat_region 5357 5435 . ? . description=trf scaffold_673 . repeat_region 5370 5431 . ? . description=dust scaffold_673 . repeat_region 5386 5444 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_674 1 8146 scaffold_674 . biological_region 128 129 0.999 - . logic_name=eponine scaffold_674 . repeat_region 1194 6682 . ? . description=dust scaffold_674 . repeat_region 7278 7326 . ? . description=trf scaffold_674 . repeat_region 7381 7388 . ? . description=dust scaffold_674 . repeat_region 7429 7438 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_675 1 8146 scaffold_675 . repeat_region 213 257 . ? . description=trf scaffold_675 . repeat_region 234 269 . ? . description=trf scaffold_675 . repeat_region 884 917 . ? . description=trf scaffold_675 . repeat_region 1641 7055 . ? . description=dust scaffold_675 . repeat_region 8028 8035 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_677 1 8146 scaffold_677 . biological_region 464 465 0.999 - . logic_name=eponine scaffold_677 . repeat_region 1538 1593 . ? . description=trf scaffold_677 . repeat_region 2261 6907 . ? . description=dust scaffold_677 . biological_region 7618 7618 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_672 1 8154 scaffold_672 . repeat_region 184 308 . ? . description=trf scaffold_672 . repeat_region 184 308 . ? . description=trf scaffold_672 . repeat_region 1813 7069 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_670 1 8156 scaffold_670 . repeat_region 956 3193 . ? . description=dust scaffold_670 . repeat_region 7981 7991 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_669 1 8157 scaffold_669 . repeat_region 635 648 . ? . description=dust scaffold_669 . repeat_region 904 924 . ? . description=trf scaffold_669 . repeat_region 971 990 . ? . description=dust scaffold_669 . repeat_region 971 990 . ? . description=trf scaffold_669 . repeat_region 2352 3392 . ? . description=dust scaffold_669 . biological_region 5509 5512 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_229 1 8173 scaffold_229 . repeat_region 1435 6586 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_697 1 8173 scaffold_697 . biological_region 282 282 0.999 + . logic_name=eponine scaffold_697 . repeat_region 1708 6219 . ? . description=dust scaffold_697 . repeat_region 7256 7305 . ? . description=dust scaffold_697 ensembl protein_coding_gene 42 1322 . - . ID=Physo145239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6970001;logic_name=jgi_physo1_1 scaffold_697 ensembl transcript 42 1322 . - . ID=Physo145239;Parent=Physo145239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_697 . CDS 42 1322 . - 0 ID=Physo145239;Parent=Physo145239;rank=1 scaffold_697 . exon 42 1322 . - . ID=Physo145239.1;Parent=Physo145239;constitutive=1;rank=1 scaffold_697 ensembl protein_coding_gene 7628 7975 . + . ID=Physo145240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6970002;logic_name=jgi_physo1_1 scaffold_697 ensembl transcript 7628 7975 . + . ID=Physo145240;Parent=Physo145240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_697 . CDS 7628 7975 . + 0 ID=Physo145240;Parent=Physo145240;rank=1 scaffold_697 . exon 7628 7975 . + . ID=Physo145240.1;Parent=Physo145240;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_664 1 8186 scaffold_664 . repeat_region 2 922 . + . description=GypsyPi-1c_I-int scaffold_664 . repeat_region 1354 7052 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_660 1 8189 scaffold_660 . repeat_region 899 6680 . ? . description=dust scaffold_660 . biological_region 7205 7206 0.999 - . logic_name=eponine scaffold_660 . biological_region 7216 7217 0.999 + . logic_name=eponine scaffold_660 . biological_region 7272 7276 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_661 1 8189 scaffold_661 . repeat_region 896 906 . ? . description=dust scaffold_661 . repeat_region 1501 6662 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_701 1 8189 scaffold_701 . repeat_region 952 6186 . ? . description=dust scaffold_701 . biological_region 6228 6228 0.999 + . logic_name=eponine scaffold_701 . biological_region 7555 7556 0.999 - . logic_name=eponine scaffold_701 . biological_region 7583 7587 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_658 1 8192 scaffold_658 . repeat_region 918 938 . ? . description=dust scaffold_658 . repeat_region 1075 6990 . ? . description=dust scaffold_658 . repeat_region 6991 8192 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_659 1 8192 scaffold_659 . repeat_region 1 492 . + . description=GypsyPi-1c_I-int scaffold_659 . biological_region 163 164 0.999 + . logic_name=eponine scaffold_659 . biological_region 1014 1016 0.999 + . logic_name=eponine scaffold_659 . repeat_region 1062 6774 . ? . description=dust scaffold_659 . repeat_region 7471 7847 . + . description=Polinton-1_PI scaffold_659 . repeat_region 8021 8072 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_657 1 8193 scaffold_657 . repeat_region 839 6798 . ? . description=dust scaffold_657 . repeat_region 7473 7480 . ? . description=dust scaffold_657 . biological_region 8020 8022 0.999 - . logic_name=eponine scaffold_657 ensembl protein_coding_gene 6800 7198 . - . ID=Physo126103;biotype=protein_coding;external_name=estExt_Genewise1.C_6570001;logic_name=jgi_physo1_1 scaffold_657 ensembl transcript 6800 7198 . - . ID=Physo126103;Parent=Physo126103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_657 . CDS 6800 7198 . - 0 ID=Physo126103;Parent=Physo126103;rank=1 scaffold_657 . exon 6800 7198 . - . ID=Physo126103.1;Parent=Physo126103;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_665 1 8195 scaffold_665 . biological_region 188 190 0.999 - . logic_name=eponine scaffold_665 . repeat_region 1138 7186 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_666 1 8198 scaffold_666 . repeat_region 972 980 . ? . description=dust scaffold_666 . repeat_region 1204 7314 . ? . description=dust scaffold_666 . repeat_region 7336 7381 . ? . description=trf scaffold_666 . repeat_region 7346 7392 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_656 1 8200 scaffold_656 . repeat_region 464 472 . ? . description=dust scaffold_656 . repeat_region 474 557 . ? . description=trf scaffold_656 . repeat_region 475 557 . ? . description=trf scaffold_656 . repeat_region 475 635 . ? . description=dust scaffold_656 . repeat_region 648 660 . ? . description=dust scaffold_656 . repeat_region 1328 1335 . ? . description=dust scaffold_656 . repeat_region 1365 7062 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_668 1 8201 scaffold_668 . repeat_region 1499 2545 . ? . description=dust scaffold_668 . repeat_region 4212 7134 . ? . description=dust scaffold_668 . biological_region 7277 7279 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_654 1 8213 scaffold_654 . repeat_region 416 457 . ? . description=trf scaffold_654 . biological_region 1489 1492 0.999 + . logic_name=eponine scaffold_654 . repeat_region 1599 6926 . ? . description=dust scaffold_654 ensembl protein_coding_gene 1 652 . - . ID=Physo126102;biotype=protein_coding;external_name=estExt_Genewise1.C_6540001;logic_name=jgi_physo1_1 scaffold_654 ensembl transcript 1 652 . - . ID=Physo126102;Parent=Physo126102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_654 . exon 1 652 . - . ID=Physo126102.1;Parent=Physo126102;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_654 . CDS 2 652 . - 0 ID=Physo126102;Parent=Physo126102;rank=1 ##gff-version 3 ##sequence-region scaffold_648 1 8227 scaffold_648 . repeat_region 1005 6375 . ? . description=dust scaffold_648 . repeat_region 7230 7293 . ? . description=trf scaffold_648 . repeat_region 7363 7443 . ? . description=trf scaffold_648 . repeat_region 7933 8080 . ? . description=trf scaffold_648 . repeat_region 8082 8122 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_649 1 8227 scaffold_649 . repeat_region 1482 2557 . ? . description=dust scaffold_649 . repeat_region 3700 6934 . ? . description=dust scaffold_649 ensembl protein_coding_gene 7952 8149 . - . ID=Physo126095;biotype=protein_coding;external_name=estExt_Genewise1.C_6490001;logic_name=jgi_physo1_1 scaffold_649 ensembl transcript 7952 8149 . - . ID=Physo126095;Parent=Physo126095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_649 . exon 7952 8149 . - . ID=Physo126095.1;Parent=Physo126095;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_649 . CDS 7953 8147 . - 0 ID=Physo126095;Parent=Physo126095;rank=1 scaffold_649 ensembl protein_coding_gene 1 1481 . - . ID=Physo145222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6490001;logic_name=jgi_physo1_1 scaffold_649 ensembl transcript 1 1481 . - . ID=Physo145222;Parent=Physo145222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_649 . exon 1 1481 . - . ID=Physo145222.1;Parent=Physo145222;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_649 . CDS 3 1448 . - 0 ID=Physo145222;Parent=Physo145222;rank=1 ##gff-version 3 ##sequence-region scaffold_652 1 8227 scaffold_652 . repeat_region 928 6610 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_650 1 8229 scaffold_650 . biological_region 4630 4632 0.999 - . logic_name=eponine scaffold_650 . biological_region 4655 4658 0.999 + . logic_name=eponine scaffold_650 . biological_region 4702 4708 0.999 - . logic_name=eponine scaffold_650 . biological_region 4718 4724 0.999 - . logic_name=eponine scaffold_650 . biological_region 5134 5138 0.999 - . logic_name=eponine scaffold_650 . biological_region 5344 5347 0.999 + . logic_name=eponine scaffold_650 . repeat_region 5992 6048 . ? . description=dust scaffold_650 . biological_region 6663 6663 0.999 - . logic_name=eponine scaffold_650 . biological_region 6682 6685 0.999 - . logic_name=eponine scaffold_650 . biological_region 7119 7121 0.999 + . logic_name=eponine scaffold_650 . biological_region 8067 8068 0.999 - . logic_name=eponine scaffold_650 ensembl protein_coding_gene 4424 6093 . - . ID=Physo109716;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_6500001;logic_name=jgi_physo1_1 scaffold_650 ensembl transcript 4424 6093 . - . ID=Physo109716;Parent=Physo109716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_650 . CDS 4424 5614 . - 0 ID=Physo109716;Parent=Physo109716;rank=3 scaffold_650 . exon 4424 5614 . - . ID=Physo109716.3;Parent=Physo109716;constitutive=1;rank=3 scaffold_650 . CDS 5659 5987 . - 0 ID=Physo109716;Parent=Physo109716;rank=2 scaffold_650 . exon 5659 5987 . - . ID=Physo109716.2;Parent=Physo109716;constitutive=1;ensembl_phase=1;rank=2 scaffold_650 . CDS 6060 6087 . - 0 ID=Physo109716;Parent=Physo109716;rank=1 scaffold_650 . exon 6060 6093 . - . ID=Physo109716.1;Parent=Physo109716;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_650 ensembl protein_coding_gene 6 4271 . - . ID=Physo145223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6500001;logic_name=jgi_physo1_1 scaffold_650 ensembl transcript 6 4271 . - . ID=Physo145223;Parent=Physo145223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_650 . exon 6 1957 . - . ID=Physo145223.4;Parent=Physo145223;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_650 . CDS 8 1957 . - 0 ID=Physo145223;Parent=Physo145223;rank=4 scaffold_650 . CDS 2099 2275 . - 0 ID=Physo145223;Parent=Physo145223;rank=3 scaffold_650 . exon 2099 2275 . - . ID=Physo145223.3;Parent=Physo145223;constitutive=1;rank=3 scaffold_650 . CDS 2452 3903 . - 0 ID=Physo145223;Parent=Physo145223;rank=2 scaffold_650 . exon 2452 3903 . - . ID=Physo145223.2;Parent=Physo145223;constitutive=1;rank=2 scaffold_650 . CDS 3981 4271 . - 0 ID=Physo145223;Parent=Physo145223;rank=1 scaffold_650 . exon 3981 4271 . - . ID=Physo145223.1;Parent=Physo145223;constitutive=1;rank=1 scaffold_650 ensembl protein_coding_gene 6343 7236 . - . ID=Physo145225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6500003;logic_name=jgi_physo1_1 scaffold_650 ensembl transcript 6343 7236 . - . ID=Physo145225;Parent=Physo145225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_650 . CDS 6343 7236 . - 0 ID=Physo145225;Parent=Physo145225;rank=1 scaffold_650 . exon 6343 7236 . - . ID=Physo145225.1;Parent=Physo145225;constitutive=1;rank=1 scaffold_650 ensembl protein_coding_gene 7865 8224 . + . ID=Physo145226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6500004;logic_name=jgi_physo1_1 scaffold_650 ensembl transcript 7865 8224 . + . ID=Physo145226;Parent=Physo145226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_650 . CDS 7865 8224 . + 0 ID=Physo145226;Parent=Physo145226;rank=1 scaffold_650 . exon 7865 8224 . + . ID=Physo145226.1;Parent=Physo145226;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_651 1 8230 scaffold_651 . biological_region 2632 2635 0.999 + . logic_name=eponine scaffold_651 . repeat_region 2918 2939 . ? . description=trf scaffold_651 . biological_region 4325 4327 0.999 - . logic_name=eponine scaffold_651 . repeat_region 5470 5478 . ? . description=dust scaffold_651 . repeat_region 7007 7017 . ? . description=dust scaffold_651 ensembl protein_coding_gene 4345 4680 . - . ID=Physo145227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6510001;logic_name=jgi_physo1_1 scaffold_651 ensembl transcript 4345 4680 . - . ID=Physo145227;Parent=Physo145227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_651 . CDS 4345 4680 . - 0 ID=Physo145227;Parent=Physo145227;rank=1 scaffold_651 . exon 4345 4680 . - . ID=Physo145227.1;Parent=Physo145227;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_647 1 8233 scaffold_647 . repeat_region 1 238 . + . description=Polinton-1_PI scaffold_647 . repeat_region 313 493 . + . description=Polinton-1_PI scaffold_647 . repeat_region 1032 6741 . ? . description=dust scaffold_647 . repeat_region 6772 8184 . - . description=GypsyPi-1c_I-int scaffold_647 ensembl protein_coding_gene 7132 8097 . - . ID=Physo145221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6470001;logic_name=jgi_physo1_1 scaffold_647 ensembl transcript 7132 8097 . - . ID=Physo145221;Parent=Physo145221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_647 . CDS 7132 7577 . - 0 ID=Physo145221;Parent=Physo145221;rank=2 scaffold_647 . exon 7132 7577 . - . ID=Physo145221.2;Parent=Physo145221;constitutive=1;ensembl_phase=1;rank=2 scaffold_647 . CDS 7833 8097 . - 0 ID=Physo145221;Parent=Physo145221;rank=1 scaffold_647 . exon 7833 8097 . - . ID=Physo145221.1;Parent=Physo145221;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_743 1 8234 scaffold_743 . repeat_region 1842 7188 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_680 1 8240 scaffold_680 . biological_region 601 602 0.999 + . logic_name=eponine scaffold_680 . biological_region 1544 1545 0.999 + . logic_name=eponine scaffold_680 . repeat_region 1635 2452 . ? . description=dust scaffold_680 . repeat_region 4013 4062 . ? . description=dust scaffold_680 . repeat_region 4368 4410 . ? . description=trf scaffold_680 . repeat_region 4889 4936 . ? . description=trf scaffold_680 . repeat_region 4891 4945 . ? . description=trf scaffold_680 . biological_region 7649 7652 0.999 + . logic_name=eponine scaffold_680 ensembl protein_coding_gene 5627 6989 . - . ID=Physo126106;biotype=protein_coding;external_name=estExt_Genewise1.C_6800001;logic_name=jgi_physo1_1 scaffold_680 ensembl transcript 5627 6989 . - . ID=Physo126106;Parent=Physo126106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_680 . exon 5627 5954 . - . ID=Physo126106.2;Parent=Physo126106;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_680 . CDS 5725 5946 . - 0 ID=Physo126106;Parent=Physo126106;rank=1 scaffold_680 . exon 6949 6989 . - . ID=Physo126106.1;Parent=Physo126106;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_680 ensembl protein_coding_gene 4080 4650 . + . ID=Physo145231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6800001;logic_name=jgi_physo1_1 scaffold_680 ensembl transcript 4080 4650 . + . ID=Physo145231;Parent=Physo145231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_680 . exon 4080 4201 . + . ID=Physo145231.1;Parent=Physo145231;constitutive=1;ensembl_phase=-1;rank=1 scaffold_680 . CDS 4082 4201 . + 0 ID=Physo145231;Parent=Physo145231;rank=1 scaffold_680 . CDS 4250 4335 . + 0 ID=Physo145231;Parent=Physo145231;rank=2 scaffold_680 . exon 4250 4335 . + . ID=Physo145231.2;Parent=Physo145231;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_680 . CDS 4364 4640 . + 0 ID=Physo145231;Parent=Physo145231;rank=3 scaffold_680 . exon 4364 4650 . + . ID=Physo145231.3;Parent=Physo145231;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_680 ensembl protein_coding_gene 7221 8240 . + . ID=Physo145232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6800002;logic_name=jgi_physo1_1 scaffold_680 ensembl transcript 7221 8240 . + . ID=Physo145232;Parent=Physo145232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_680 . exon 7221 7498 . + . ID=Physo145232.1;Parent=Physo145232;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_680 . CDS 7227 7498 . + 0 ID=Physo145232;Parent=Physo145232;rank=1 scaffold_680 . CDS 7555 8239 . + 0 ID=Physo145232;Parent=Physo145232;rank=2 scaffold_680 . exon 7555 8240 . + . ID=Physo145232.2;Parent=Physo145232;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_653 1 8241 scaffold_653 . repeat_region 1298 1347 . ? . description=dust scaffold_653 . repeat_region 2249 7373 . ? . description=dust scaffold_653 . repeat_region 7946 7966 . ? . description=trf scaffold_653 ensembl protein_coding_gene 1095 1262 . - . ID=Physo126101;biotype=protein_coding;external_name=estExt_Genewise1.C_6530001;logic_name=jgi_physo1_1 scaffold_653 ensembl transcript 1095 1262 . - . ID=Physo126101;Parent=Physo126101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_653 . exon 1095 1262 . - . ID=Physo126101.1;Parent=Physo126101;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_653 . CDS 1097 1261 . - 0 ID=Physo126101;Parent=Physo126101;rank=1 scaffold_653 ensembl protein_coding_gene 7524 8003 . - . ID=Physo145228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6530001;logic_name=jgi_physo1_1 scaffold_653 ensembl transcript 7524 8003 . - . ID=Physo145228;Parent=Physo145228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_653 . CDS 7524 7703 . - 0 ID=Physo145228;Parent=Physo145228;rank=2 scaffold_653 . exon 7524 7703 . - . ID=Physo145228.2;Parent=Physo145228;constitutive=1;rank=2 scaffold_653 . CDS 7763 7882 . - 0 ID=Physo145228;Parent=Physo145228;rank=1 scaffold_653 . exon 7763 8003 . - . ID=Physo145228.1;Parent=Physo145228;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_644 1 8246 scaffold_644 . repeat_region 1518 7255 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_645 1 8250 scaffold_645 . repeat_region 5 90 . ? . description=trf scaffold_645 . repeat_region 29 101 . ? . description=trf scaffold_645 . repeat_region 985 1018 . ? . description=trf scaffold_645 . repeat_region 985 1019 . ? . description=trf scaffold_645 . biological_region 1133 1135 0.999 - . logic_name=eponine scaffold_645 . biological_region 1419 1423 0.999 + . logic_name=eponine scaffold_645 . biological_region 1506 1508 0.999 - . logic_name=eponine scaffold_645 . repeat_region 1572 2890 . ? . description=dust scaffold_645 . repeat_region 3094 3101 . ? . description=dust scaffold_645 . repeat_region 4296 6706 . ? . description=dust scaffold_645 . biological_region 7818 7824 0.999 + . logic_name=eponine scaffold_645 ensembl protein_coding_gene 1369 1530 . + . ID=Physo145219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6450001;logic_name=jgi_physo1_1 scaffold_645 ensembl transcript 1369 1530 . + . ID=Physo145219;Parent=Physo145219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_645 . exon 1369 1416 . + . ID=Physo145219.1;Parent=Physo145219;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_645 . CDS 1370 1416 . + 0 ID=Physo145219;Parent=Physo145219;rank=1 scaffold_645 . CDS 1477 1528 . + 0 ID=Physo145219;Parent=Physo145219;rank=2 scaffold_645 . exon 1477 1530 . + . ID=Physo145219.2;Parent=Physo145219;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_645 ensembl protein_coding_gene 6825 8250 . - . ID=Physo145220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6450002;logic_name=jgi_physo1_1 scaffold_645 ensembl transcript 6825 8250 . - . ID=Physo145220;Parent=Physo145220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_645 . CDS 6825 6940 . - 0 ID=Physo145220;Parent=Physo145220;rank=2 scaffold_645 . exon 6825 6940 . - . ID=Physo145220.2;Parent=Physo145220;constitutive=1;ensembl_phase=1;rank=2 scaffold_645 . CDS 7006 7456 . - 0 ID=Physo145220;Parent=Physo145220;rank=1 scaffold_645 . exon 7006 8250 . - . ID=Physo145220.1;Parent=Physo145220;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_736 1 8253 scaffold_736 . repeat_region 725 952 . ? . description=trf scaffold_736 . repeat_region 771 952 . ? . description=trf scaffold_736 . repeat_region 775 960 . ? . description=dust scaffold_736 . repeat_region 1291 7027 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_639 1 8254 scaffold_639 . repeat_region 1146 4673 . ? . description=dust scaffold_639 ensembl protein_coding_gene 5008 5773 . - . ID=Physo145218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6390001;logic_name=jgi_physo1_1 scaffold_639 ensembl transcript 5008 5773 . - . ID=Physo145218;Parent=Physo145218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_639 . CDS 5008 5616 . - 0 ID=Physo145218;Parent=Physo145218;rank=2 scaffold_639 . exon 5008 5616 . - . ID=Physo145218.2;Parent=Physo145218;constitutive=1;rank=2 scaffold_639 . CDS 5717 5773 . - 0 ID=Physo145218;Parent=Physo145218;rank=1 scaffold_639 . exon 5717 5773 . - . ID=Physo145218.1;Parent=Physo145218;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_641 1 8257 scaffold_641 . repeat_region 169 188 . ? . description=trf scaffold_641 . repeat_region 1409 6436 . ? . description=dust scaffold_641 . biological_region 6656 6659 0.999 + . logic_name=eponine scaffold_641 . repeat_region 7814 7834 . ? . description=trf scaffold_641 . repeat_region 7814 7870 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_640 1 8260 scaffold_640 . repeat_region 863 6408 . ? . description=dust scaffold_640 . repeat_region 6463 6618 . ? . description=trf scaffold_640 ensembl protein_coding_gene 7977 8254 . - . ID=Physo126093;biotype=protein_coding;external_name=estExt_Genewise1.C_6400001;logic_name=jgi_physo1_1 scaffold_640 ensembl transcript 7977 8254 . - . ID=Physo126093;Parent=Physo126093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_640 . exon 7977 8254 . - . ID=Physo126093.1;Parent=Physo126093;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_640 . CDS 7979 8215 . - 0 ID=Physo126093;Parent=Physo126093;rank=1 ##gff-version 3 ##sequence-region scaffold_636 1 8272 scaffold_636 . repeat_region 1081 1109 . ? . description=trf scaffold_636 . repeat_region 1379 7138 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_642 1 8272 scaffold_642 . repeat_region 2967 2974 . ? . description=dust scaffold_642 . repeat_region 3672 7464 . ? . description=dust scaffold_642 . biological_region 7999 8000 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_637 1 8275 scaffold_637 . biological_region 365 372 0.999 + . logic_name=eponine scaffold_637 . biological_region 572 575 0.999 + . logic_name=eponine scaffold_637 ensembl protein_coding_gene 52 918 . - . ID=Physo145215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6370001;logic_name=jgi_physo1_1 scaffold_637 ensembl transcript 52 918 . - . ID=Physo145215;Parent=Physo145215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_637 . CDS 52 918 . - 0 ID=Physo145215;Parent=Physo145215;rank=1 scaffold_637 . exon 52 918 . - . ID=Physo145215.1;Parent=Physo145215;constitutive=1;rank=1 scaffold_637 ensembl protein_coding_gene 1404 2626 . - . ID=Physo145216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6370002;logic_name=jgi_physo1_1 scaffold_637 ensembl transcript 1404 2626 . - . ID=Physo145216;Parent=Physo145216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_637 . CDS 1404 1790 . - 0 ID=Physo145216;Parent=Physo145216;rank=3 scaffold_637 . exon 1404 1790 . - . ID=Physo145216.3;Parent=Physo145216;constitutive=1;rank=3 scaffold_637 . CDS 1856 2480 . - 0 ID=Physo145216;Parent=Physo145216;rank=2 scaffold_637 . exon 1856 2480 . - . ID=Physo145216.2;Parent=Physo145216;constitutive=1;ensembl_phase=2;rank=2 scaffold_637 . CDS 2502 2626 . - 0 ID=Physo145216;Parent=Physo145216;rank=1 scaffold_637 . exon 2502 2626 . - . ID=Physo145216.1;Parent=Physo145216;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_637 ensembl protein_coding_gene 4680 8238 . - . ID=Physo145217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6370003;logic_name=jgi_physo1_1 scaffold_637 ensembl transcript 4680 8238 . - . ID=Physo145217;Parent=Physo145217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_637 . CDS 4680 4758 . - 0 ID=Physo145217;Parent=Physo145217;rank=3 scaffold_637 . exon 4680 4758 . - . ID=Physo145217.3;Parent=Physo145217;constitutive=1;ensembl_phase=2;rank=3 scaffold_637 . CDS 4822 7253 . - 0 ID=Physo145217;Parent=Physo145217;rank=2 scaffold_637 . exon 4822 7253 . - . ID=Physo145217.2;Parent=Physo145217;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_637 . CDS 7330 8238 . - 0 ID=Physo145217;Parent=Physo145217;rank=1 scaffold_637 . exon 7330 8238 . - . ID=Physo145217.1;Parent=Physo145217;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_663 1 8276 scaffold_663 . repeat_region 2148 6679 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_671 1 8277 scaffold_671 . biological_region 155 155 0.999 - . logic_name=eponine scaffold_671 . biological_region 617 623 0.999 + . logic_name=eponine scaffold_671 . biological_region 662 667 0.999 - . logic_name=eponine scaffold_671 . biological_region 724 729 0.999 - . logic_name=eponine scaffold_671 . biological_region 741 748 0.999 - . logic_name=eponine scaffold_671 . repeat_region 1261 2707 . ? . description=dust scaffold_671 . repeat_region 3740 3789 . ? . description=dust scaffold_671 . repeat_region 4037 4117 . ? . description=trf scaffold_671 . repeat_region 4187 4249 . ? . description=trf scaffold_671 . repeat_region 4503 7361 . ? . description=dust scaffold_671 . repeat_region 8125 8154 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_634 1 8279 scaffold_634 . biological_region 127 127 0.999 + . logic_name=eponine scaffold_634 . biological_region 189 192 0.999 - . logic_name=eponine scaffold_634 . biological_region 265 268 0.999 + . logic_name=eponine scaffold_634 . biological_region 299 300 0.999 + . logic_name=eponine scaffold_634 . biological_region 299 303 0.999 - . logic_name=eponine scaffold_634 . biological_region 1349 1349 0.999 - . logic_name=eponine scaffold_634 . repeat_region 1464 7391 . ? . description=dust scaffold_634 ensembl protein_coding_gene 1136 1463 . - . ID=Physo126091;biotype=protein_coding;external_name=estExt_Genewise1.C_6340001;logic_name=jgi_physo1_1 scaffold_634 ensembl transcript 1136 1463 . - . ID=Physo126091;Parent=Physo126091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_634 . exon 1136 1463 . - . ID=Physo126091.1;Parent=Physo126091;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_634 . CDS 1137 1424 . - 0 ID=Physo126091;Parent=Physo126091;rank=1 scaffold_634 ensembl protein_coding_gene 118 466 . + . ID=Physo145214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6340001;logic_name=jgi_physo1_1 scaffold_634 ensembl transcript 118 466 . + . ID=Physo145214;Parent=Physo145214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_634 . exon 118 466 . + . ID=Physo145214.1;Parent=Physo145214;constitutive=1;ensembl_phase=-1;rank=1 scaffold_634 . CDS 119 466 . + 0 ID=Physo145214;Parent=Physo145214;rank=1 ##gff-version 3 ##sequence-region scaffold_635 1 8286 scaffold_635 . biological_region 2071 2074 0.999 + . logic_name=eponine scaffold_635 . biological_region 3128 3129 0.999 + . logic_name=eponine scaffold_635 . biological_region 3288 3294 0.999 + . logic_name=eponine scaffold_635 . biological_region 3297 3304 0.999 - . logic_name=eponine scaffold_635 . biological_region 3332 3334 0.999 + . logic_name=eponine scaffold_635 . biological_region 3343 3348 0.999 - . logic_name=eponine scaffold_635 . biological_region 3466 3471 0.999 + . logic_name=eponine scaffold_635 . biological_region 3510 3516 0.999 - . logic_name=eponine scaffold_635 . biological_region 4439 4442 0.999 + . logic_name=eponine scaffold_635 . biological_region 4478 4482 0.999 + . logic_name=eponine scaffold_635 . biological_region 6200 6203 0.999 - . logic_name=eponine scaffold_635 . biological_region 6854 6855 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_646 1 8287 scaffold_646 . repeat_region 699 3618 . ? . description=dust scaffold_646 . biological_region 4079 4079 0.999 + . logic_name=eponine scaffold_646 . repeat_region 4134 4157 . ? . description=trf scaffold_646 . repeat_region 6640 6689 . ? . description=dust scaffold_646 . repeat_region 7104 7111 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_638 1 8288 scaffold_638 . repeat_region 1384 3073 . ? . description=dust scaffold_638 . repeat_region 3311 3473 . ? . description=trf scaffold_638 . repeat_region 4151 7136 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_632 1 8303 scaffold_632 . repeat_region 1538 6931 . ? . description=dust scaffold_632 . repeat_region 7362 7370 . ? . description=dust scaffold_632 . repeat_region 7462 7542 . + . description=(TG)n scaffold_632 . repeat_region 7484 7518 . ? . description=trf scaffold_632 . repeat_region 7484 7543 . ? . description=dust scaffold_632 . repeat_region 7518 7543 . ? . description=trf scaffold_632 . repeat_region 7986 7993 . ? . description=dust scaffold_632 . repeat_region 8038 8049 . ? . description=dust scaffold_632 . repeat_region 8200 8215 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_630 1 8316 scaffold_630 . biological_region 467 472 0.999 - . logic_name=eponine scaffold_630 . biological_region 1018 1022 0.999 + . logic_name=eponine scaffold_630 . repeat_region 1239 7243 . ? . description=dust scaffold_630 . biological_region 7292 7293 0.999 + . logic_name=eponine scaffold_630 . biological_region 7426 7429 0.999 - . logic_name=eponine scaffold_630 . repeat_region 7957 8305 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_631 1 8318 scaffold_631 . repeat_region 1003 1118 . + . description=Gypsy-1-LTR_PI scaffold_631 . biological_region 4352 4357 0.999 + . logic_name=eponine scaffold_631 . biological_region 4399 4403 0.999 - . logic_name=eponine scaffold_631 . biological_region 4991 4993 0.999 + . logic_name=eponine scaffold_631 . biological_region 5028 5034 0.999 + . logic_name=eponine scaffold_631 . biological_region 5047 5053 0.999 - . logic_name=eponine scaffold_631 . biological_region 5169 5172 0.999 - . logic_name=eponine scaffold_631 . biological_region 6833 6836 0.999 + . logic_name=eponine scaffold_631 . biological_region 6886 6890 0.999 + . logic_name=eponine scaffold_631 . biological_region 6898 6902 0.999 + . logic_name=eponine scaffold_631 . biological_region 6911 6913 0.999 + . logic_name=eponine scaffold_631 . biological_region 6921 6924 0.999 + . logic_name=eponine scaffold_631 . biological_region 6958 6960 0.999 - . logic_name=eponine scaffold_631 . biological_region 6988 6992 0.999 + . logic_name=eponine scaffold_631 . biological_region 7023 7026 0.999 - . logic_name=eponine scaffold_631 . biological_region 7077 7081 0.999 + . logic_name=eponine scaffold_631 . biological_region 7117 7122 0.999 + . logic_name=eponine scaffold_631 . biological_region 7119 7125 0.999 - . logic_name=eponine scaffold_631 . biological_region 7139 7142 0.999 + . logic_name=eponine scaffold_631 . biological_region 7161 7164 0.999 - . logic_name=eponine scaffold_631 . biological_region 7174 7177 0.999 + . logic_name=eponine scaffold_631 . biological_region 7522 7524 0.999 - . logic_name=eponine scaffold_631 ensembl protein_coding_gene 3573 5182 . - . ID=Physo109715;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_6310001;logic_name=jgi_physo1_1 scaffold_631 ensembl transcript 3573 5182 . - . ID=Physo109715;Parent=Physo109715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_631 . exon 3573 5182 . - . ID=Physo109715.1;Parent=Physo109715;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_631 . CDS 3635 5182 . - 0 ID=Physo109715;Parent=Physo109715;rank=1 scaffold_631 ensembl protein_coding_gene 2301 2918 . + . ID=Physo145209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6310001;logic_name=jgi_physo1_1 scaffold_631 ensembl transcript 2301 2918 . + . ID=Physo145209;Parent=Physo145209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_631 . CDS 2301 2918 . + 0 ID=Physo145209;Parent=Physo145209;rank=1 scaffold_631 . exon 2301 2918 . + . ID=Physo145209.1;Parent=Physo145209;constitutive=1;rank=1 scaffold_631 ensembl protein_coding_gene 5805 8145 . + . ID=Physo145211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6310003;logic_name=jgi_physo1_1 scaffold_631 ensembl transcript 5805 8145 . + . ID=Physo145211;Parent=Physo145211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_631 . CDS 5805 6148 . + 0 ID=Physo145211;Parent=Physo145211;rank=1 scaffold_631 . exon 5805 6148 . + . ID=Physo145211.1;Parent=Physo145211;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_631 . CDS 6204 6320 . + 0 ID=Physo145211;Parent=Physo145211;rank=2 scaffold_631 . exon 6204 6320 . + . ID=Physo145211.2;Parent=Physo145211;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_631 . CDS 6392 6577 . + 0 ID=Physo145211;Parent=Physo145211;rank=3 scaffold_631 . exon 6392 6577 . + . ID=Physo145211.3;Parent=Physo145211;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_631 . CDS 6792 8145 . + 0 ID=Physo145211;Parent=Physo145211;rank=4 scaffold_631 . exon 6792 8145 . + . ID=Physo145211.4;Parent=Physo145211;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_760 1 8319 scaffold_760 . repeat_region 1293 7066 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_628 1 8321 scaffold_628 . repeat_region 632 6876 . ? . description=dust scaffold_628 . repeat_region 7038 7108 . ? . description=trf scaffold_628 . repeat_region 7046 7107 . ? . description=dust scaffold_628 . biological_region 7148 7151 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_629 1 8322 scaffold_629 . repeat_region 78 166 . ? . description=trf scaffold_629 . repeat_region 1436 6939 . ? . description=dust scaffold_629 . repeat_region 7375 7476 . ? . description=dust scaffold_629 . repeat_region 7376 7476 . ? . description=trf scaffold_629 . repeat_region 7384 7477 . ? . description=trf scaffold_629 . repeat_region 7384 7477 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_627 1 8330 scaffold_627 . repeat_region 301 416 . + . description=(GAGAA)n scaffold_627 . repeat_region 306 394 . ? . description=dust scaffold_627 . repeat_region 307 394 . ? . description=trf scaffold_627 . repeat_region 1176 7082 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_626 1 8331 scaffold_626 . repeat_region 1218 1243 . ? . description=trf scaffold_626 . repeat_region 1336 6999 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_625 1 8334 scaffold_625 . repeat_region 1481 6902 . ? . description=dust scaffold_625 ensembl protein_coding_gene 7936 8133 . - . ID=Physo126084;biotype=protein_coding;external_name=estExt_Genewise1.C_6250001;logic_name=jgi_physo1_1 scaffold_625 ensembl transcript 7936 8133 . - . ID=Physo126084;Parent=Physo126084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_625 . exon 7936 8133 . - . ID=Physo126084.1;Parent=Physo126084;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_625 . CDS 7937 8131 . - 0 ID=Physo126084;Parent=Physo126084;rank=1 scaffold_625 ensembl protein_coding_gene 1 1477 . - . ID=Physo145208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6250001;logic_name=jgi_physo1_1 scaffold_625 ensembl transcript 1 1477 . - . ID=Physo145208;Parent=Physo145208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_625 . exon 1 1477 . - . ID=Physo145208.1;Parent=Physo145208;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_625 . CDS 35 1417 . - 0 ID=Physo145208;Parent=Physo145208;rank=1 ##gff-version 3 ##sequence-region scaffold_623 1 8340 scaffold_623 . repeat_region 1568 7641 . ? . description=dust scaffold_623 . biological_region 7971 7971 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_624 1 8342 scaffold_624 . repeat_region 2797 2807 . ? . description=dust scaffold_624 ensembl protein_coding_gene 6843 7092 . + . ID=Physo126079;biotype=protein_coding;external_name=estExt_Genewise1.C_6240001;logic_name=jgi_physo1_1 scaffold_624 ensembl transcript 6843 7092 . + . ID=Physo126079;Parent=Physo126079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_624 . exon 6843 7092 . + . ID=Physo126079.1;Parent=Physo126079;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_624 . CDS 6885 7085 . + 0 ID=Physo126079;Parent=Physo126079;rank=1 ##gff-version 3 ##sequence-region scaffold_633 1 8346 scaffold_633 . repeat_region 824 831 . ? . description=dust scaffold_633 . repeat_region 1784 6729 . ? . description=dust scaffold_633 . repeat_region 7460 7509 . ? . description=dust scaffold_633 . biological_region 7563 7566 0.999 + . logic_name=eponine scaffold_633 ensembl protein_coding_gene 860 1778 . + . ID=Physo126090;biotype=protein_coding;external_name=estExt_Genewise1.C_6330001;logic_name=jgi_physo1_1 scaffold_633 ensembl transcript 860 1778 . + . ID=Physo126090;Parent=Physo126090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_633 . exon 860 1013 . + . ID=Physo126090.1;Parent=Physo126090;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_633 . CDS 913 1013 . + 0 ID=Physo126090;Parent=Physo126090;rank=1 scaffold_633 . CDS 1103 1162 . + 0 ID=Physo126090;Parent=Physo126090;rank=2 scaffold_633 . exon 1103 1162 . + . ID=Physo126090.2;Parent=Physo126090;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_633 . CDS 1242 1485 . + 0 ID=Physo126090;Parent=Physo126090;rank=3 scaffold_633 . exon 1242 1485 . + . ID=Physo126090.3;Parent=Physo126090;constitutive=1;ensembl_phase=2;rank=3 scaffold_633 . CDS 1560 1778 . + 0 ID=Physo126090;Parent=Physo126090;rank=4 scaffold_633 . exon 1560 1778 . + . ID=Physo126090.4;Parent=Physo126090;constitutive=1;rank=4 scaffold_633 ensembl protein_coding_gene 6880 7850 . + . ID=Physo145213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6330002;logic_name=jgi_physo1_1 scaffold_633 ensembl transcript 6880 7850 . + . ID=Physo145213;Parent=Physo145213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_633 . CDS 6880 6962 . + 0 ID=Physo145213;Parent=Physo145213;rank=1 scaffold_633 . exon 6880 6962 . + . ID=Physo145213.1;Parent=Physo145213;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_633 . CDS 7045 7289 . + 0 ID=Physo145213;Parent=Physo145213;rank=2 scaffold_633 . exon 7045 7289 . + . ID=Physo145213.2;Parent=Physo145213;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_633 . CDS 7408 7454 . + 0 ID=Physo145213;Parent=Physo145213;rank=3 scaffold_633 . exon 7408 7454 . + . ID=Physo145213.3;Parent=Physo145213;constitutive=1;ensembl_phase=1;rank=3 scaffold_633 . CDS 7554 7850 . + 0 ID=Physo145213;Parent=Physo145213;rank=4 scaffold_633 . exon 7554 7850 . + . ID=Physo145213.4;Parent=Physo145213;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_622 1 8348 scaffold_622 . biological_region 361 364 0.999 + . logic_name=eponine scaffold_622 . repeat_region 678 4335 . ? . description=dust scaffold_622 . biological_region 5226 5235 0.999 + . logic_name=eponine scaffold_622 . biological_region 5468 5475 0.999 + . logic_name=eponine scaffold_622 . biological_region 5579 5581 0.999 - . logic_name=eponine scaffold_622 . biological_region 7078 7081 0.999 - . logic_name=eponine scaffold_622 . biological_region 7453 7466 0.999 + . logic_name=eponine scaffold_622 . biological_region 7577 7580 0.999 - . logic_name=eponine scaffold_622 . biological_region 7833 7837 0.999 - . logic_name=eponine scaffold_622 ensembl protein_coding_gene 4347 6556 . + . ID=Physo126077;biotype=protein_coding;external_name=estExt_Genewise1.C_6220001;logic_name=jgi_physo1_1 scaffold_622 ensembl transcript 4347 6556 . + . ID=Physo126077;Parent=Physo126077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_622 . exon 4347 4682 . + . ID=Physo126077.1;Parent=Physo126077;constitutive=1;ensembl_phase=-1;rank=1 scaffold_622 . CDS 4362 4682 . + 0 ID=Physo126077;Parent=Physo126077;rank=1 scaffold_622 . CDS 6038 6355 . + 0 ID=Physo126077;Parent=Physo126077;rank=2 scaffold_622 . exon 6038 6437 . + . ID=Physo126077.2;Parent=Physo126077;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_622 . exon 6529 6556 . + . ID=Physo126077.3;Parent=Physo126077;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 ##gff-version 3 ##sequence-region scaffold_620 1 8357 scaffold_620 . biological_region 1802 1805 0.999 - . logic_name=eponine scaffold_620 . repeat_region 2028 7195 . ? . description=dust scaffold_620 ensembl protein_coding_gene 266 1803 . + . ID=Physo145206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6200001;logic_name=jgi_physo1_1 scaffold_620 ensembl transcript 266 1803 . + . ID=Physo145206;Parent=Physo145206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_620 . exon 266 1677 . + . ID=Physo145206.1;Parent=Physo145206;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_620 . CDS 335 1677 . + 0 ID=Physo145206;Parent=Physo145206;rank=1 scaffold_620 . CDS 1712 1718 . + 0 ID=Physo145206;Parent=Physo145206;rank=2 scaffold_620 . exon 1712 1803 . + . ID=Physo145206.2;Parent=Physo145206;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_662 1 8358 scaffold_662 . repeat_region 1412 6629 . ? . description=dust scaffold_662 ensembl protein_coding_gene 6918 7073 . + . ID=Physo126104;biotype=protein_coding;external_name=estExt_Genewise1.C_6620001;logic_name=jgi_physo1_1 scaffold_662 ensembl transcript 6918 7073 . + . ID=Physo126104;Parent=Physo126104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_662 . CDS 6918 7073 . + 0 ID=Physo126104;Parent=Physo126104;rank=1 scaffold_662 . exon 6918 7073 . + . ID=Physo126104.1;Parent=Physo126104;constitutive=1;rank=1 scaffold_662 ensembl protein_coding_gene 7289 7627 . + . ID=Physo126105;biotype=protein_coding;external_name=estExt_Genewise1.C_6620002;logic_name=jgi_physo1_1 scaffold_662 ensembl transcript 7289 7627 . + . ID=Physo126105;Parent=Physo126105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_662 . exon 7289 7354 . + . ID=Physo126105.1;Parent=Physo126105;constitutive=1;ensembl_phase=-1;rank=1 scaffold_662 . CDS 7349 7354 . + 0 ID=Physo126105;Parent=Physo126105;rank=1 scaffold_662 . CDS 7433 7627 . + 0 ID=Physo126105;Parent=Physo126105;rank=2 scaffold_662 . exon 7433 7627 . + . ID=Physo126105.2;Parent=Physo126105;constitutive=1;rank=2 scaffold_662 ensembl protein_coding_gene 356 1154 . + . ID=Physo145230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6620001;logic_name=jgi_physo1_1 scaffold_662 ensembl transcript 356 1154 . + . ID=Physo145230;Parent=Physo145230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_662 . CDS 356 1077 . + 0 ID=Physo145230;Parent=Physo145230;rank=1 scaffold_662 . exon 356 1077 . + . ID=Physo145230.1;Parent=Physo145230;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_662 . CDS 1121 1154 . + 0 ID=Physo145230;Parent=Physo145230;rank=2 scaffold_662 . exon 1121 1154 . + . ID=Physo145230.2;Parent=Physo145230;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_619 1 8359 scaffold_619 . biological_region 190 192 0.999 + . logic_name=eponine scaffold_619 . repeat_region 1818 4325 . ? . description=dust scaffold_619 . repeat_region 4554 4577 . ? . description=trf scaffold_619 . repeat_region 5264 6540 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_618 1 8364 scaffold_618 . biological_region 71 74 0.999 + . logic_name=eponine scaffold_618 . biological_region 928 933 0.999 - . logic_name=eponine scaffold_618 . biological_region 991 993 0.999 - . logic_name=eponine scaffold_618 . repeat_region 1641 7808 . ? . description=dust scaffold_618 . biological_region 8165 8167 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_616 1 8365 scaffold_616 . biological_region 1411 1412 0.999 - . logic_name=eponine scaffold_616 . repeat_region 5986 5993 . ? . description=dust scaffold_616 . repeat_region 6922 7180 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_615 1 8367 scaffold_615 . repeat_region 519 526 . ? . description=dust scaffold_615 . repeat_region 1858 7210 . ? . description=dust scaffold_615 . repeat_region 7245 7293 . ? . description=trf scaffold_615 . repeat_region 7432 7473 . ? . description=trf scaffold_615 . repeat_region 8257 8289 . ? . description=dust scaffold_615 . repeat_region 8257 8289 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_621 1 8369 scaffold_621 . repeat_region 1407 4010 . ? . description=dust scaffold_621 . repeat_region 4011 4686 . - . description=Gypsy-2-I_PI-int scaffold_621 . repeat_region 4687 6616 . ? . description=dust scaffold_621 ensembl protein_coding_gene 4062 4688 . - . ID=Physo126076;biotype=protein_coding;external_name=estExt_Genewise1.C_6210001;logic_name=jgi_physo1_1 scaffold_621 ensembl transcript 4062 4688 . - . ID=Physo126076;Parent=Physo126076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_621 . CDS 4062 4649 . - 0 ID=Physo126076;Parent=Physo126076;rank=1 scaffold_621 . exon 4062 4688 . - . ID=Physo126076.1;Parent=Physo126076;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_613 1 8374 scaffold_613 . biological_region 370 372 0.999 - . logic_name=eponine scaffold_613 . repeat_region 738 6206 . ? . description=dust scaffold_613 . biological_region 6738 6745 0.999 + . logic_name=eponine scaffold_613 . repeat_region 7591 7601 . ? . description=dust scaffold_613 ensembl pseudogene 6428 7595 . - . ID=Physo126069;biotype=pseudogene;external_name=estExt_Genewise1.C_6130001;logic_name=jgi_physo1_1 scaffold_613 ensembl pseudogene 6428 7595 . - . ID=Physo126069;Parent=Physo126069;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_613 . exon 6428 7595 . - . ID=Physo126069.1;Parent=Physo126069;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_643 1 8389 scaffold_643 . repeat_region 1 1076 . + . description=GypsyPi-1c_I-int scaffold_643 . repeat_region 1088 2807 . ? . description=dust scaffold_643 . biological_region 3226 3226 0.999 + . logic_name=eponine scaffold_643 . repeat_region 3719 6855 . ? . description=dust scaffold_643 . repeat_region 7939 7996 . ? . description=trf scaffold_643 . repeat_region 7939 8014 . + . description=(CTCA)n scaffold_643 . repeat_region 7943 7996 . ? . description=dust scaffold_643 . repeat_region 8325 8365 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_679 1 8389 scaffold_679 . repeat_region 631 667 . ? . description=trf scaffold_679 . repeat_region 1651 7635 . ? . description=dust scaffold_679 . biological_region 8150 8154 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_611 1 8392 scaffold_611 . repeat_region 1433 6646 . ? . description=dust scaffold_611 . repeat_region 7351 7393 . ? . description=trf scaffold_611 ensembl protein_coding_gene 7999 8360 . - . ID=Physo145204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6110001;logic_name=jgi_physo1_1 scaffold_611 ensembl transcript 7999 8360 . - . ID=Physo145204;Parent=Physo145204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_611 . exon 7999 8303 . - . ID=Physo145204.2;Parent=Physo145204;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_611 . CDS 8015 8303 . - 0 ID=Physo145204;Parent=Physo145204;rank=2 scaffold_611 . CDS 8323 8339 . - 0 ID=Physo145204;Parent=Physo145204;rank=1 scaffold_611 . exon 8323 8360 . - . ID=Physo145204.1;Parent=Physo145204;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_612 1 8392 scaffold_612 . repeat_region 1871 2072 . + . description=Polinton-1_PI scaffold_612 . repeat_region 2128 7508 . ? . description=dust scaffold_612 . repeat_region 7845 7872 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_610 1 8400 scaffold_610 . repeat_region 153 305 . ? . description=trf scaffold_610 . repeat_region 3637 3672 . ? . description=trf scaffold_610 . repeat_region 4296 4564 . ? . description=dust scaffold_610 . biological_region 6356 6360 0.999 - . logic_name=eponine scaffold_610 ensembl protein_coding_gene 5294 6707 . - . ID=Physo145203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6100001;logic_name=jgi_physo1_1 scaffold_610 ensembl transcript 5294 6707 . - . ID=Physo145203;Parent=Physo145203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_610 . CDS 5294 5325 . - 0 ID=Physo145203;Parent=Physo145203;rank=7 scaffold_610 . exon 5294 5325 . - . ID=Physo145203.7;Parent=Physo145203;constitutive=1;ensembl_phase=1;rank=7 scaffold_610 . CDS 5434 5530 . - 0 ID=Physo145203;Parent=Physo145203;rank=6 scaffold_610 . exon 5434 5530 . - . ID=Physo145203.6;Parent=Physo145203;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_610 . CDS 5603 5751 . - 0 ID=Physo145203;Parent=Physo145203;rank=5 scaffold_610 . exon 5603 5751 . - . ID=Physo145203.5;Parent=Physo145203;constitutive=1;ensembl_phase=1;rank=5 scaffold_610 . CDS 5825 6000 . - 0 ID=Physo145203;Parent=Physo145203;rank=4 scaffold_610 . exon 5825 6000 . - . ID=Physo145203.4;Parent=Physo145203;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_610 . CDS 6090 6195 . - 0 ID=Physo145203;Parent=Physo145203;rank=3 scaffold_610 . exon 6090 6195 . - . ID=Physo145203.3;Parent=Physo145203;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_610 . CDS 6278 6604 . - 0 ID=Physo145203;Parent=Physo145203;rank=2 scaffold_610 . exon 6278 6604 . - . ID=Physo145203.2;Parent=Physo145203;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_610 . CDS 6692 6707 . - 0 ID=Physo145203;Parent=Physo145203;rank=1 scaffold_610 . exon 6692 6707 . - . ID=Physo145203.1;Parent=Physo145203;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_609 1 8402 scaffold_609 . repeat_region 242 838 . - . description=GypsyPi-1c_I-int scaffold_609 . repeat_region 842 6494 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_712 1 8406 scaffold_712 . biological_region 373 377 0.999 + . logic_name=eponine scaffold_712 . biological_region 416 423 0.999 - . logic_name=eponine scaffold_712 . biological_region 450 452 0.999 + . logic_name=eponine scaffold_712 . biological_region 466 469 0.999 - . logic_name=eponine scaffold_712 . biological_region 472 480 0.999 + . logic_name=eponine scaffold_712 . biological_region 503 505 0.999 + . logic_name=eponine scaffold_712 . biological_region 508 513 0.999 - . logic_name=eponine scaffold_712 . biological_region 741 751 0.999 + . logic_name=eponine scaffold_712 . biological_region 768 771 0.999 + . logic_name=eponine scaffold_712 . biological_region 793 798 0.999 + . logic_name=eponine scaffold_712 . biological_region 809 814 0.999 - . logic_name=eponine scaffold_712 . biological_region 845 847 0.999 - . logic_name=eponine scaffold_712 . biological_region 853 853 0.999 + . logic_name=eponine scaffold_712 . biological_region 873 876 0.999 - . logic_name=eponine scaffold_712 . biological_region 905 910 0.999 - . logic_name=eponine scaffold_712 . biological_region 1200 1202 0.999 - . logic_name=eponine scaffold_712 . repeat_region 1255 4345 . ? . description=dust scaffold_712 . repeat_region 5934 6115 . ? . description=dust scaffold_712 . repeat_region 6981 7228 . ? . description=dust scaffold_712 ensembl protein_coding_gene 305 1254 . + . ID=Physo126152;biotype=protein_coding;external_name=estExt_Genewise1.C_7120004;logic_name=jgi_physo1_1 scaffold_712 ensembl transcript 305 1254 . + . ID=Physo126152;Parent=Physo126152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_712 . CDS 305 1252 . + 0 ID=Physo126152;Parent=Physo126152;rank=1 scaffold_712 . exon 305 1254 . + . ID=Physo126152.1;Parent=Physo126152;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_712 ensembl protein_coding_gene 4965 5824 . - . ID=Physo145248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_7120002;logic_name=jgi_physo1_1 scaffold_712 ensembl transcript 4965 5824 . - . ID=Physo145248;Parent=Physo145248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_712 . CDS 4965 5404 . - 0 ID=Physo145248;Parent=Physo145248;rank=2 scaffold_712 . exon 4965 5404 . - . ID=Physo145248.2;Parent=Physo145248;constitutive=1;ensembl_phase=1;rank=2 scaffold_712 . CDS 5437 5824 . - 0 ID=Physo145248;Parent=Physo145248;rank=1 scaffold_712 . exon 5437 5824 . - . ID=Physo145248.1;Parent=Physo145248;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_605 1 8428 scaffold_605 . biological_region 895 895 0.999 - . logic_name=eponine scaffold_605 . repeat_region 1682 6977 . ? . description=dust scaffold_605 ensembl protein_coding_gene 791 1676 . - . ID=Physo145200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6050001;logic_name=jgi_physo1_1 scaffold_605 ensembl transcript 791 1676 . - . ID=Physo145200;Parent=Physo145200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_605 . CDS 791 1654 . - 0 ID=Physo145200;Parent=Physo145200;rank=1 scaffold_605 . exon 791 1676 . - . ID=Physo145200.1;Parent=Physo145200;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_617 1 8433 scaffold_617 . repeat_region 1515 7339 . ? . description=dust scaffold_617 . repeat_region 7340 7905 . + . description=Polinton-1_PI scaffold_617 . repeat_region 7895 8286 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_604 1 8434 scaffold_604 . biological_region 523 525 0.999 - . logic_name=eponine scaffold_604 . biological_region 553 553 0.999 + . logic_name=eponine scaffold_604 . biological_region 805 807 0.999 - . logic_name=eponine scaffold_604 . repeat_region 1168 6843 . ? . description=dust scaffold_604 . biological_region 7024 7026 0.999 + . logic_name=eponine scaffold_604 . biological_region 8019 8023 0.999 + . logic_name=eponine scaffold_604 ensembl protein_coding_gene 505 1113 . - . ID=Physo145198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6040001;logic_name=jgi_physo1_1 scaffold_604 ensembl transcript 505 1113 . - . ID=Physo145198;Parent=Physo145198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_604 . CDS 505 1113 . - 0 ID=Physo145198;Parent=Physo145198;rank=1 scaffold_604 . exon 505 1113 . - . ID=Physo145198.1;Parent=Physo145198;constitutive=1;rank=1 scaffold_604 ensembl protein_coding_gene 7097 8434 . - . ID=Physo145199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6040002;logic_name=jgi_physo1_1 scaffold_604 ensembl transcript 7097 8434 . - . ID=Physo145199;Parent=Physo145199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_604 . CDS 7097 7337 . - 0 ID=Physo145199;Parent=Physo145199;rank=2 scaffold_604 . exon 7097 7337 . - . ID=Physo145199.2;Parent=Physo145199;constitutive=1;ensembl_phase=2;rank=2 scaffold_604 . CDS 7445 7968 . - 0 ID=Physo145199;Parent=Physo145199;rank=1 scaffold_604 . exon 7445 8434 . - . ID=Physo145199.1;Parent=Physo145199;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_608 1 8434 scaffold_608 . repeat_region 915 4141 . ? . description=dust scaffold_608 . repeat_region 8106 8150 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_603 1 8446 scaffold_603 . repeat_region 1 63 . ? . description=dust scaffold_603 . repeat_region 1755 1862 . ? . description=dust scaffold_603 . repeat_region 3477 3484 . ? . description=dust scaffold_603 . repeat_region 3542 6876 . ? . description=dust scaffold_603 . repeat_region 8182 8260 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_602 1 8450 scaffold_602 . repeat_region 554 562 . ? . description=dust scaffold_602 . repeat_region 1215 5802 . ? . description=dust scaffold_602 . biological_region 5885 5887 0.999 + . logic_name=eponine scaffold_602 . biological_region 6372 6376 0.999 - . logic_name=eponine scaffold_602 . biological_region 6387 6392 0.999 + . logic_name=eponine scaffold_602 . biological_region 6458 6463 0.999 - . logic_name=eponine scaffold_602 . biological_region 6514 6517 0.999 + . logic_name=eponine scaffold_602 . biological_region 6835 6839 0.999 + . logic_name=eponine scaffold_602 . biological_region 6869 6873 0.999 + . logic_name=eponine scaffold_602 . biological_region 7169 7169 0.999 - . logic_name=eponine scaffold_602 . biological_region 7310 7311 0.999 + . logic_name=eponine scaffold_602 ensembl protein_coding_gene 90 584 . + . ID=Physo145195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6020001;logic_name=jgi_physo1_1 scaffold_602 ensembl transcript 90 584 . + . ID=Physo145195;Parent=Physo145195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_602 . CDS 90 500 . + 0 ID=Physo145195;Parent=Physo145195;rank=1 scaffold_602 . exon 90 584 . + . ID=Physo145195.1;Parent=Physo145195;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_602 ensembl protein_coding_gene 721 7303 . + . ID=Physo145196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6020002;logic_name=jgi_physo1_1 scaffold_602 ensembl transcript 721 7303 . + . ID=Physo145196;Parent=Physo145196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_602 . exon 721 1166 . + . ID=Physo145196.1;Parent=Physo145196;constitutive=1;ensembl_phase=-1;rank=1 scaffold_602 . CDS 750 1166 . + 0 ID=Physo145196;Parent=Physo145196;rank=1 scaffold_602 . CDS 5847 7199 . + 0 ID=Physo145196;Parent=Physo145196;rank=2 scaffold_602 . exon 5847 7303 . + . ID=Physo145196.2;Parent=Physo145196;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_602 ensembl protein_coding_gene 7318 8046 . - . ID=Physo145197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6020003;logic_name=jgi_physo1_1 scaffold_602 ensembl transcript 7318 8046 . - . ID=Physo145197;Parent=Physo145197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_602 . exon 7318 8046 . - . ID=Physo145197.1;Parent=Physo145197;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_602 . CDS 7435 8046 . - 0 ID=Physo145197;Parent=Physo145197;rank=1 ##gff-version 3 ##sequence-region scaffold_614 1 8452 scaffold_614 . repeat_region 1128 4906 . ? . description=dust scaffold_614 . repeat_region 4907 5819 . - . description=GypsyPi-1c_I-int scaffold_614 . biological_region 5009 5013 0.999 + . logic_name=eponine scaffold_614 . repeat_region 5822 6707 . ? . description=dust scaffold_614 . repeat_region 6708 8452 . - . description=GypsyPi-1c_I-int scaffold_614 . repeat_region 7909 7991 . ? . description=trf scaffold_614 . repeat_region 7909 8016 . ? . description=trf scaffold_614 . repeat_region 7971 8041 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_600 1 8463 scaffold_600 . repeat_region 1771 1795 . ? . description=trf scaffold_600 . biological_region 1866 1870 0.999 - . logic_name=eponine scaffold_600 . repeat_region 3028 3405 . ? . description=dust scaffold_600 . repeat_region 4510 4984 . ? . description=dust scaffold_600 . repeat_region 6037 6674 . ? . description=dust scaffold_600 . biological_region 6877 6883 0.999 + . logic_name=eponine scaffold_600 . repeat_region 7314 7321 . ? . description=dust scaffold_600 . repeat_region 7440 7463 . ? . description=trf scaffold_600 ensembl protein_coding_gene 988 2270 . - . ID=Physo126056;biotype=protein_coding;external_name=estExt_Genewise1.C_6000001;logic_name=jgi_physo1_1 scaffold_600 ensembl transcript 988 2270 . - . ID=Physo126056;Parent=Physo126056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_600 . CDS 988 1185 . - 0 ID=Physo126056;Parent=Physo126056;rank=2 scaffold_600 . exon 988 1185 . - . ID=Physo126056.2;Parent=Physo126056;constitutive=1;rank=2 scaffold_600 . CDS 2169 2222 . - 0 ID=Physo126056;Parent=Physo126056;rank=1 scaffold_600 . exon 2169 2270 . - . ID=Physo126056.1;Parent=Physo126056;constitutive=1;ensembl_phase=-1;rank=1 scaffold_600 ensembl protein_coding_gene 6824 7132 . - . ID=Physo145194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6000001;logic_name=jgi_physo1_1 scaffold_600 ensembl transcript 6824 7132 . - . ID=Physo145194;Parent=Physo145194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_600 . CDS 6824 7132 . - 0 ID=Physo145194;Parent=Physo145194;rank=1 scaffold_600 . exon 6824 7132 . - . ID=Physo145194.1;Parent=Physo145194;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_601 1 8464 scaffold_601 . repeat_region 284 368 . + . description=Polinton-1_PI scaffold_601 . repeat_region 2516 3031 . + . description=Polinton-1_PI scaffold_601 . repeat_region 3278 3618 . + . description=Polinton-1_PI scaffold_601 . repeat_region 4313 4435 . ? . description=trf scaffold_601 . repeat_region 5814 5821 . ? . description=dust scaffold_601 . repeat_region 6184 6205 . ? . description=dust scaffold_601 . repeat_region 6462 6561 . - . description=Polinton-1_PI scaffold_601 . repeat_region 6652 6659 . ? . description=dust scaffold_601 . repeat_region 6995 8463 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_598 1 8466 scaffold_598 . repeat_region 803 4232 . ? . description=dust scaffold_598 . repeat_region 5930 6670 . ? . description=dust scaffold_598 . biological_region 7216 7218 0.999 - . logic_name=eponine scaffold_598 . biological_region 7271 7274 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_607 1 8467 scaffold_607 . repeat_region 1109 1158 . ? . description=dust scaffold_607 . repeat_region 1969 6726 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_599 1 8469 scaffold_599 . repeat_region 210 233 . ? . description=dust scaffold_599 . repeat_region 2275 7136 . ? . description=dust scaffold_599 . biological_region 7333 7336 0.999 + . logic_name=eponine scaffold_599 . repeat_region 7716 7776 . ? . description=dust scaffold_599 . biological_region 7801 7803 0.999 - . logic_name=eponine scaffold_599 . biological_region 7848 7849 0.999 - . logic_name=eponine scaffold_599 ensembl protein_coding_gene 3 161 . - . ID=Physo126054;biotype=protein_coding;external_name=estExt_Genewise1.C_5990001;logic_name=jgi_physo1_1 scaffold_599 ensembl transcript 3 161 . - . ID=Physo126054;Parent=Physo126054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_599 . exon 3 161 . - . ID=Physo126054.1;Parent=Physo126054;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_599 . CDS 4 159 . - 0 ID=Physo126054;Parent=Physo126054;rank=1 scaffold_599 ensembl protein_coding_gene 280 1720 . - . ID=Physo145192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5990001;logic_name=jgi_physo1_1 scaffold_599 ensembl transcript 280 1720 . - . ID=Physo145192;Parent=Physo145192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_599 . CDS 280 570 . - 0 ID=Physo145192;Parent=Physo145192;rank=3 scaffold_599 . exon 280 570 . - . ID=Physo145192.3;Parent=Physo145192;constitutive=1;rank=3 scaffold_599 . CDS 624 1249 . - 0 ID=Physo145192;Parent=Physo145192;rank=2 scaffold_599 . exon 624 1249 . - . ID=Physo145192.2;Parent=Physo145192;constitutive=1;ensembl_phase=1;rank=2 scaffold_599 . CDS 1273 1720 . - 0 ID=Physo145192;Parent=Physo145192;rank=1 scaffold_599 . exon 1273 1720 . - . ID=Physo145192.1;Parent=Physo145192;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_599 ensembl protein_coding_gene 7139 8441 . + . ID=Physo145193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5990002;logic_name=jgi_physo1_1 scaffold_599 ensembl transcript 7139 8441 . + . ID=Physo145193;Parent=Physo145193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_599 . exon 7139 8441 . + . ID=Physo145193.1;Parent=Physo145193;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_599 . CDS 7181 8440 . + 0 ID=Physo145193;Parent=Physo145193;rank=1 ##gff-version 3 ##sequence-region scaffold_691 1 8485 scaffold_691 . repeat_region 1068 4105 . ? . description=dust scaffold_691 . biological_region 4559 4562 0.999 - . logic_name=eponine scaffold_691 . biological_region 4575 4578 0.999 + . logic_name=eponine scaffold_691 . biological_region 4850 4851 0.999 - . logic_name=eponine scaffold_691 . repeat_region 5241 5336 . ? . description=dust scaffold_691 . repeat_region 5267 5310 . ? . description=trf scaffold_691 . repeat_region 5267 5310 . ? . description=trf scaffold_691 . repeat_region 5323 5351 . ? . description=trf scaffold_691 . biological_region 5339 5341 0.999 - . logic_name=eponine scaffold_691 . biological_region 5419 5421 0.999 - . logic_name=eponine scaffold_691 . biological_region 5520 5523 0.999 - . logic_name=eponine scaffold_691 . repeat_region 5590 7338 . ? . description=dust scaffold_691 . biological_region 7936 7938 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_593 1 8490 scaffold_593 . repeat_region 1 954 . - . description=GypsyPi-1c_I-int scaffold_593 . repeat_region 701 799 . ? . description=trf scaffold_593 . repeat_region 782 949 . ? . description=trf scaffold_593 . repeat_region 974 1635 . - . description=GypsyPi-1c_I-int scaffold_593 . repeat_region 1636 2900 . ? . description=dust scaffold_593 . biological_region 3394 3395 0.999 + . logic_name=eponine scaffold_593 . biological_region 4047 4048 0.999 + . logic_name=eponine scaffold_593 . repeat_region 4651 7097 . ? . description=dust scaffold_593 ensembl protein_coding_gene 4137 4576 . + . ID=Physo126050;biotype=protein_coding;external_name=estExt_Genewise1.C_5930001;logic_name=jgi_physo1_1 scaffold_593 ensembl transcript 4137 4576 . + . ID=Physo126050;Parent=Physo126050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_593 . exon 4137 4398 . + . ID=Physo126050.1;Parent=Physo126050;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_593 . CDS 4206 4398 . + 0 ID=Physo126050;Parent=Physo126050;rank=1 scaffold_593 . CDS 4491 4576 . + 0 ID=Physo126050;Parent=Physo126050;rank=2 scaffold_593 . exon 4491 4576 . + . ID=Physo126050.2;Parent=Physo126050;constitutive=1;ensembl_phase=1;rank=2 scaffold_593 ensembl protein_coding_gene 244 830 . - . ID=Physo145189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5930001;logic_name=jgi_physo1_1 scaffold_593 ensembl transcript 244 830 . - . ID=Physo145189;Parent=Physo145189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_593 . CDS 244 751 . - 0 ID=Physo145189;Parent=Physo145189;rank=2 scaffold_593 . exon 244 751 . - . ID=Physo145189.2;Parent=Physo145189;constitutive=1;ensembl_phase=2;rank=2 scaffold_593 . CDS 775 830 . - 0 ID=Physo145189;Parent=Physo145189;rank=1 scaffold_593 . exon 775 830 . - . ID=Physo145189.1;Parent=Physo145189;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_591 1 8495 scaffold_591 . biological_region 1552 1556 0.999 + . logic_name=eponine scaffold_591 . repeat_region 1680 4319 . ? . description=dust scaffold_591 . repeat_region 5196 6745 . ? . description=dust scaffold_591 . biological_region 7606 7613 0.999 - . logic_name=eponine scaffold_591 ensembl protein_coding_gene 19 1283 . + . ID=Physo145187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5910001;logic_name=jgi_physo1_1 scaffold_591 ensembl transcript 19 1283 . + . ID=Physo145187;Parent=Physo145187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_591 . CDS 19 241 . + 0 ID=Physo145187;Parent=Physo145187;rank=1 scaffold_591 . exon 19 241 . + . ID=Physo145187.1;Parent=Physo145187;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_591 . CDS 625 1283 . + 0 ID=Physo145187;Parent=Physo145187;rank=2 scaffold_591 . exon 625 1283 . + . ID=Physo145187.2;Parent=Physo145187;constitutive=1;ensembl_phase=1;rank=2 scaffold_591 ensembl protein_coding_gene 4692 7106 . - . ID=Physo145188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5910002;logic_name=jgi_physo1_1 scaffold_591 ensembl transcript 4692 7106 . - . ID=Physo145188;Parent=Physo145188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_591 . CDS 4692 4706 . - 0 ID=Physo145188;Parent=Physo145188;rank=3 scaffold_591 . exon 4692 4706 . - . ID=Physo145188.3;Parent=Physo145188;constitutive=1;rank=3 scaffold_591 . CDS 4729 5189 . - 0 ID=Physo145188;Parent=Physo145188;rank=2 scaffold_591 . exon 4729 5189 . - . ID=Physo145188.2;Parent=Physo145188;constitutive=1;ensembl_phase=1;rank=2 scaffold_591 . CDS 6809 7106 . - 0 ID=Physo145188;Parent=Physo145188;rank=1 scaffold_591 . exon 6809 7106 . - . ID=Physo145188.1;Parent=Physo145188;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_589 1 8496 scaffold_589 . repeat_region 913 933 . ? . description=dust scaffold_589 . repeat_region 913 933 . ? . description=trf scaffold_589 . repeat_region 1799 7039 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_590 1 8499 scaffold_590 . repeat_region 1028 4928 . ? . description=dust scaffold_590 . biological_region 5029 5031 0.999 + . logic_name=eponine scaffold_590 ensembl protein_coding_gene 241 1027 . - . ID=Physo145184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5900001;logic_name=jgi_physo1_1 scaffold_590 ensembl transcript 241 1027 . - . ID=Physo145184;Parent=Physo145184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_590 . CDS 241 1026 . - 0 ID=Physo145184;Parent=Physo145184;rank=1 scaffold_590 . exon 241 1027 . - . ID=Physo145184.1;Parent=Physo145184;constitutive=1;ensembl_phase=-1;rank=1 scaffold_590 ensembl protein_coding_gene 6203 6631 . - . ID=Physo145185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5900002;logic_name=jgi_physo1_1 scaffold_590 ensembl transcript 6203 6631 . - . ID=Physo145185;Parent=Physo145185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_590 . CDS 6203 6631 . - 0 ID=Physo145185;Parent=Physo145185;rank=1 scaffold_590 . exon 6203 6631 . - . ID=Physo145185.1;Parent=Physo145185;constitutive=1;rank=1 scaffold_590 ensembl protein_coding_gene 7809 8269 . + . ID=Physo145186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5900003;logic_name=jgi_physo1_1 scaffold_590 ensembl transcript 7809 8269 . + . ID=Physo145186;Parent=Physo145186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_590 . CDS 7809 8267 . + 0 ID=Physo145186;Parent=Physo145186;rank=1 scaffold_590 . exon 7809 8269 . + . ID=Physo145186.1;Parent=Physo145186;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_587 1 8510 scaffold_587 . biological_region 261 265 0.999 - . logic_name=eponine scaffold_587 . biological_region 838 841 0.999 + . logic_name=eponine scaffold_587 . biological_region 1846 1849 0.999 + . logic_name=eponine scaffold_587 . biological_region 2181 2183 0.999 - . logic_name=eponine scaffold_587 . biological_region 2262 2268 0.999 - . logic_name=eponine scaffold_587 . biological_region 2908 2908 0.999 - . logic_name=eponine scaffold_587 . biological_region 2911 2913 0.999 + . logic_name=eponine scaffold_587 . repeat_region 2913 2976 . ? . description=dust scaffold_587 . repeat_region 6726 6745 . ? . description=trf scaffold_587 . biological_region 7457 7463 0.999 + . logic_name=eponine scaffold_587 ensembl protein_coding_gene 6445 7146 . - . ID=Physo109713;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_5870001;logic_name=jgi_physo1_1 scaffold_587 ensembl transcript 6445 7146 . - . ID=Physo109713;Parent=Physo109713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_587 . CDS 6445 7146 . - 0 ID=Physo109713;Parent=Physo109713;rank=1 scaffold_587 . exon 6445 7146 . - . ID=Physo109713.1;Parent=Physo109713;constitutive=1;rank=1 scaffold_587 ensembl protein_coding_gene 193 1137 . + . ID=Physo145179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5870001;logic_name=jgi_physo1_1 scaffold_587 ensembl transcript 193 1137 . + . ID=Physo145179;Parent=Physo145179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_587 . CDS 193 489 . + 0 ID=Physo145179;Parent=Physo145179;rank=1 scaffold_587 . exon 193 489 . + . ID=Physo145179.1;Parent=Physo145179;constitutive=1;rank=1 scaffold_587 . CDS 592 1137 . + 0 ID=Physo145179;Parent=Physo145179;rank=2 scaffold_587 . exon 592 1137 . + . ID=Physo145179.2;Parent=Physo145179;constitutive=1;rank=2 scaffold_587 ensembl protein_coding_gene 2910 3227 . + . ID=Physo145180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5870002;logic_name=jgi_physo1_1 scaffold_587 ensembl transcript 2910 3227 . + . ID=Physo145180;Parent=Physo145180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_587 . CDS 2910 3227 . + 0 ID=Physo145180;Parent=Physo145180;rank=1 scaffold_587 . exon 2910 3227 . + . ID=Physo145180.1;Parent=Physo145180;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_606 1 8523 scaffold_606 . repeat_region 2016 3246 . ? . description=dust scaffold_606 . biological_region 3784 3788 0.999 + . logic_name=eponine scaffold_606 . repeat_region 4528 7389 . ? . description=dust scaffold_606 ensembl protein_coding_gene 7972 8391 . - . ID=Physo126068;biotype=protein_coding;external_name=estExt_Genewise1.C_6060001;logic_name=jgi_physo1_1 scaffold_606 ensembl transcript 7972 8391 . - . ID=Physo126068;Parent=Physo126068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_606 . CDS 7972 8298 . - 0 ID=Physo126068;Parent=Physo126068;rank=1 scaffold_606 . exon 7972 8391 . - . ID=Physo126068.1;Parent=Physo126068;constitutive=1;ensembl_phase=-1;rank=1 scaffold_606 ensembl protein_coding_gene 2 1879 . + . ID=Physo145201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6060001;logic_name=jgi_physo1_1 scaffold_606 ensembl transcript 2 1879 . + . ID=Physo145201;Parent=Physo145201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_606 . CDS 2 1879 . + 0 ID=Physo145201;Parent=Physo145201;rank=1 scaffold_606 . exon 2 1879 . + . ID=Physo145201.1;Parent=Physo145201;constitutive=1;rank=1 scaffold_606 ensembl protein_coding_gene 3429 4338 . + . ID=Physo145202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_6060002;logic_name=jgi_physo1_1 scaffold_606 ensembl transcript 3429 4338 . + . ID=Physo145202;Parent=Physo145202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_606 . CDS 3429 3890 . + 0 ID=Physo145202;Parent=Physo145202;rank=1 scaffold_606 . exon 3429 3890 . + . ID=Physo145202.1;Parent=Physo145202;constitutive=1;rank=1 scaffold_606 . CDS 3964 4338 . + 0 ID=Physo145202;Parent=Physo145202;rank=2 scaffold_606 . exon 3964 4338 . + . ID=Physo145202.2;Parent=Physo145202;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_592 1 8525 scaffold_592 . repeat_region 1794 7170 . ? . description=dust scaffold_592 . biological_region 8437 8440 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_594 1 8530 scaffold_594 . repeat_region 1 421 . + . description=GypsyPi-1c_I-int scaffold_594 . biological_region 340 343 0.999 + . logic_name=eponine scaffold_594 . repeat_region 1122 1171 . ? . description=dust scaffold_594 . repeat_region 2079 6515 . ? . description=dust scaffold_594 . repeat_region 6784 6791 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_586 1 8555 scaffold_586 . repeat_region 179 225 . ? . description=trf scaffold_586 . repeat_region 1884 7401 . ? . description=dust scaffold_586 . biological_region 7566 7568 0.999 - . logic_name=eponine scaffold_586 . biological_region 7791 7794 0.999 + . logic_name=eponine scaffold_586 . biological_region 7817 7822 0.999 - . logic_name=eponine scaffold_586 . biological_region 7887 7891 0.999 - . logic_name=eponine scaffold_586 . biological_region 8288 8291 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_585 1 8559 scaffold_585 . repeat_region 1197 6297 . ? . description=dust scaffold_585 . repeat_region 6880 6887 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_584 1 8564 scaffold_584 . repeat_region 731 771 . ? . description=trf scaffold_584 . repeat_region 977 6690 . ? . description=dust scaffold_584 . repeat_region 8030 8078 . ? . description=trf scaffold_584 ensembl protein_coding_gene 6920 7671 . - . ID=Physo145178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5840001;logic_name=jgi_physo1_1 scaffold_584 ensembl transcript 6920 7671 . - . ID=Physo145178;Parent=Physo145178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_584 . CDS 6920 7367 . - 0 ID=Physo145178;Parent=Physo145178;rank=2 scaffold_584 . exon 6920 7367 . - . ID=Physo145178.2;Parent=Physo145178;constitutive=1;ensembl_phase=2;rank=2 scaffold_584 . CDS 7604 7671 . - 0 ID=Physo145178;Parent=Physo145178;rank=1 scaffold_584 . exon 7604 7671 . - . ID=Physo145178.1;Parent=Physo145178;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_655 1 8570 scaffold_655 . repeat_region 491 498 . ? . description=dust scaffold_655 . repeat_region 532 693 . ? . description=trf scaffold_655 . repeat_region 591 631 . ? . description=trf scaffold_655 . repeat_region 1235 7471 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_595 1 8571 scaffold_595 . repeat_region 1501 4529 . ? . description=dust scaffold_595 . repeat_region 5531 7156 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_597 1 8577 scaffold_597 . repeat_region 874 4974 . ? . description=dust scaffold_597 . repeat_region 6341 6613 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_583 1 8578 scaffold_583 . repeat_region 842 1048 . ? . description=trf scaffold_583 . repeat_region 1512 2830 . ? . description=dust scaffold_583 . biological_region 3178 3184 0.999 - . logic_name=eponine scaffold_583 . repeat_region 3430 3581 . - . description=GypsyPi-1c_I-int scaffold_583 . repeat_region 4250 6948 . ? . description=dust scaffold_583 . repeat_region 6956 7185 . - . description=GypsyPi-1c_I-int scaffold_583 . biological_region 7636 7639 0.999 - . logic_name=eponine scaffold_583 . repeat_region 7880 8506 . - . description=GypsyPi-1c_I-int scaffold_583 ensembl protein_coding_gene 3485 8217 . - . ID=Physo145177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5830001;logic_name=jgi_physo1_1 scaffold_583 ensembl transcript 3485 8217 . - . ID=Physo145177;Parent=Physo145177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_583 . CDS 3485 3766 . - 0 ID=Physo145177;Parent=Physo145177;rank=3 scaffold_583 . exon 3485 3766 . - . ID=Physo145177.3;Parent=Physo145177;constitutive=1;rank=3 scaffold_583 . CDS 3834 4181 . - 0 ID=Physo145177;Parent=Physo145177;rank=2 scaffold_583 . exon 3834 4181 . - . ID=Physo145177.2;Parent=Physo145177;constitutive=1;rank=2 scaffold_583 . CDS 7120 8217 . - 0 ID=Physo145177;Parent=Physo145177;rank=1 scaffold_583 . exon 7120 8217 . - . ID=Physo145177.1;Parent=Physo145177;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_582 1 8605 scaffold_582 . repeat_region 327 345 . ? . description=dust scaffold_582 . repeat_region 1371 6956 . ? . description=dust scaffold_582 . repeat_region 6957 8604 . - . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_581 1 8608 scaffold_581 . repeat_region 1547 6224 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_579 1 8613 scaffold_579 . repeat_region 283 307 . ? . description=trf scaffold_579 . biological_region 378 382 0.999 - . logic_name=eponine scaffold_579 . repeat_region 1421 7643 . ? . description=dust scaffold_579 . biological_region 7959 7964 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_580 1 8613 scaffold_580 . repeat_region 26 554 . + . description=Polinton-1_PI scaffold_580 . repeat_region 273 281 . ? . description=dust scaffold_580 . repeat_region 370 377 . ? . description=dust scaffold_580 . repeat_region 896 936 . + . description=SSU-rRNA_Tps scaffold_580 . repeat_region 1419 3877 . ? . description=dust scaffold_580 . repeat_region 3878 7855 . + . description=Polinton-1_PI scaffold_580 . repeat_region 5256 6372 . ? . description=dust scaffold_580 . repeat_region 7603 7610 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_577 1 8621 scaffold_577 . repeat_region 2090 6755 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_578 1 8621 scaffold_578 . biological_region 652 653 0.999 + . logic_name=eponine scaffold_578 . repeat_region 1636 1648 . ? . description=dust scaffold_578 . repeat_region 2499 7659 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_596 1 8626 scaffold_596 . repeat_region 2068 6978 . ? . description=dust scaffold_596 ensembl protein_coding_gene 60 1029 . + . ID=Physo145190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5960001;logic_name=jgi_physo1_1 scaffold_596 ensembl transcript 60 1029 . + . ID=Physo145190;Parent=Physo145190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_596 . CDS 60 894 . + 0 ID=Physo145190;Parent=Physo145190;rank=1 scaffold_596 . exon 60 894 . + . ID=Physo145190.1;Parent=Physo145190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_596 . CDS 968 1029 . + 0 ID=Physo145190;Parent=Physo145190;rank=2 scaffold_596 . exon 968 1029 . + . ID=Physo145190.2;Parent=Physo145190;constitutive=1;ensembl_phase=1;rank=2 scaffold_596 ensembl protein_coding_gene 7240 8513 . - . ID=Physo145191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5960002;logic_name=jgi_physo1_1 scaffold_596 ensembl transcript 7240 8513 . - . ID=Physo145191;Parent=Physo145191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_596 . CDS 7240 7256 . - 0 ID=Physo145191;Parent=Physo145191;rank=2 scaffold_596 . exon 7240 7256 . - . ID=Physo145191.2;Parent=Physo145191;constitutive=1;ensembl_phase=1;rank=2 scaffold_596 . CDS 7301 8513 . - 0 ID=Physo145191;Parent=Physo145191;rank=1 scaffold_596 . exon 7301 8513 . - . ID=Physo145191.1;Parent=Physo145191;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_575 1 8649 scaffold_575 . repeat_region 945 1036 . ? . description=trf scaffold_575 . repeat_region 949 996 . ? . description=trf scaffold_575 . repeat_region 2362 2749 . - . description=GypsyPi-1c_I-int scaffold_575 . repeat_region 2755 7863 . ? . description=dust scaffold_575 . biological_region 8360 8366 0.999 + . logic_name=eponine scaffold_575 . biological_region 8382 8386 0.999 + . logic_name=eponine scaffold_575 . biological_region 8458 8460 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_491 1 8651 scaffold_491 . repeat_region 1457 3065 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_667 1 8654 scaffold_667 . repeat_region 732 4162 . ? . description=dust scaffold_667 . repeat_region 5333 5342 . ? . description=dust scaffold_667 . repeat_region 5437 7227 . ? . description=dust scaffold_667 . biological_region 7271 7276 0.999 + . logic_name=eponine scaffold_667 . biological_region 7324 7327 0.999 + . logic_name=eponine scaffold_667 . biological_region 7342 7346 0.999 - . logic_name=eponine scaffold_667 . biological_region 8562 8569 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_573 1 8664 scaffold_573 . repeat_region 1224 5941 . ? . description=dust scaffold_573 . biological_region 6463 6467 0.999 - . logic_name=eponine scaffold_573 . repeat_region 6894 6903 . ? . description=dust scaffold_573 . repeat_region 8450 8466 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_571 1 8668 scaffold_571 . biological_region 2293 2293 0.999 - . logic_name=eponine scaffold_571 . biological_region 2649 2654 0.999 + . logic_name=eponine scaffold_571 . repeat_region 3660 3905 . ? . description=trf scaffold_571 . repeat_region 3660 3905 . ? . description=trf scaffold_571 . repeat_region 3670 3936 . ? . description=trf scaffold_571 . biological_region 3671 3674 0.999 - . logic_name=eponine scaffold_571 . repeat_region 3704 3930 . ? . description=trf scaffold_571 . biological_region 4031 4035 0.999 - . logic_name=eponine scaffold_571 . biological_region 4115 4118 0.999 + . logic_name=eponine scaffold_571 . biological_region 4443 4446 0.999 - . logic_name=eponine scaffold_571 . repeat_region 4522 4994 . + . description=GypsyPi-1c_I-int scaffold_571 . biological_region 4609 4614 0.999 - . logic_name=eponine scaffold_571 . biological_region 4677 4679 0.999 - . logic_name=eponine scaffold_571 . repeat_region 5028 6133 . ? . description=dust scaffold_571 . repeat_region 6134 6286 . + . description=GypsyPi-1c_I-int scaffold_571 . biological_region 6456 6460 0.999 - . logic_name=eponine scaffold_571 . repeat_region 6633 7156 . + . description=GypsyPi-1c_I-int scaffold_571 . biological_region 6779 6780 0.999 + . logic_name=eponine scaffold_571 . biological_region 6909 6911 0.999 - . logic_name=eponine scaffold_571 . repeat_region 7239 7652 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_570 1 8669 scaffold_570 . repeat_region 1607 4429 . ? . description=dust scaffold_570 . biological_region 5374 5375 0.999 - . logic_name=eponine scaffold_570 ensembl protein_coding_gene 1 4481 . - . ID=Physo145172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5700001;logic_name=jgi_physo1_1 scaffold_570 ensembl transcript 1 4481 . - . ID=Physo145172;Parent=Physo145172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_570 . exon 1 1601 . - . ID=Physo145172.2;Parent=Physo145172;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_570 . CDS 3 1601 . - 0 ID=Physo145172;Parent=Physo145172;rank=2 scaffold_570 . CDS 4446 4481 . - 0 ID=Physo145172;Parent=Physo145172;rank=1 scaffold_570 . exon 4446 4481 . - . ID=Physo145172.1;Parent=Physo145172;constitutive=1;rank=1 scaffold_570 ensembl protein_coding_gene 4903 5493 . + . ID=Physo145173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5700002;logic_name=jgi_physo1_1 scaffold_570 ensembl transcript 4903 5493 . + . ID=Physo145173;Parent=Physo145173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_570 . CDS 4903 5493 . + 0 ID=Physo145173;Parent=Physo145173;rank=1 scaffold_570 . exon 4903 5493 . + . ID=Physo145173.1;Parent=Physo145173;constitutive=1;rank=1 scaffold_570 ensembl protein_coding_gene 6091 7615 . + . ID=Physo145174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5700003;logic_name=jgi_physo1_1 scaffold_570 ensembl transcript 6091 7615 . + . ID=Physo145174;Parent=Physo145174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_570 . CDS 6091 7515 . + 0 ID=Physo145174;Parent=Physo145174;rank=1 scaffold_570 . exon 6091 7615 . + . ID=Physo145174.1;Parent=Physo145174;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_569 1 8675 scaffold_569 . repeat_region 1500 1539 . ? . description=trf scaffold_569 . repeat_region 2034 7611 . ? . description=dust scaffold_569 . repeat_region 8138 8229 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_568 1 8686 scaffold_568 . repeat_region 865 900 . ? . description=trf scaffold_568 . repeat_region 961 1013 . ? . description=trf scaffold_568 . repeat_region 961 1013 . ? . description=trf scaffold_568 . repeat_region 1331 6273 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_574 1 8707 scaffold_574 . repeat_region 397 504 . ? . description=trf scaffold_574 . repeat_region 397 579 . ? . description=trf scaffold_574 . biological_region 1734 1735 0.999 - . logic_name=eponine scaffold_574 . repeat_region 7481 7530 . ? . description=dust scaffold_574 ensembl protein_coding_gene 7226 7480 . + . ID=Physo126033;biotype=protein_coding;external_name=estExt_Genewise1.C_5740001;logic_name=jgi_physo1_1 scaffold_574 ensembl transcript 7226 7480 . + . ID=Physo126033;Parent=Physo126033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_574 . exon 7226 7480 . + . ID=Physo126033.1;Parent=Physo126033;constitutive=1;ensembl_phase=-1;rank=1 scaffold_574 . CDS 7259 7480 . + 0 ID=Physo126033;Parent=Physo126033;rank=1 scaffold_574 ensembl protein_coding_gene 1610 2556 . - . ID=Physo145175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5740001;logic_name=jgi_physo1_1 scaffold_574 ensembl transcript 1610 2556 . - . ID=Physo145175;Parent=Physo145175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_574 . CDS 1610 1890 . - 0 ID=Physo145175;Parent=Physo145175;rank=4 scaffold_574 . exon 1610 1890 . - . ID=Physo145175.4;Parent=Physo145175;constitutive=1;ensembl_phase=1;rank=4 scaffold_574 . CDS 2053 2215 . - 0 ID=Physo145175;Parent=Physo145175;rank=3 scaffold_574 . exon 2053 2215 . - . ID=Physo145175.3;Parent=Physo145175;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_574 . CDS 2307 2348 . - 0 ID=Physo145175;Parent=Physo145175;rank=2 scaffold_574 . exon 2307 2348 . - . ID=Physo145175.2;Parent=Physo145175;constitutive=1;rank=2 scaffold_574 . CDS 2407 2556 . - 0 ID=Physo145175;Parent=Physo145175;rank=1 scaffold_574 . exon 2407 2556 . - . ID=Physo145175.1;Parent=Physo145175;constitutive=1;rank=1 scaffold_574 ensembl protein_coding_gene 7642 8346 . - . ID=Physo145176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5740002;logic_name=jgi_physo1_1 scaffold_574 ensembl transcript 7642 8346 . - . ID=Physo145176;Parent=Physo145176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_574 . CDS 7642 7681 . - 0 ID=Physo145176;Parent=Physo145176;rank=2 scaffold_574 . exon 7642 7681 . - . ID=Physo145176.2;Parent=Physo145176;constitutive=1;ensembl_phase=2;rank=2 scaffold_574 . CDS 7743 8086 . - 0 ID=Physo145176;Parent=Physo145176;rank=1 scaffold_574 . exon 7743 8346 . - . ID=Physo145176.1;Parent=Physo145176;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_563 1 8718 scaffold_563 . biological_region 62 64 0.999 + . logic_name=eponine scaffold_563 . repeat_region 380 732 . ? . description=trf scaffold_563 . biological_region 740 744 0.999 - . logic_name=eponine scaffold_563 . biological_region 964 967 0.999 + . logic_name=eponine scaffold_563 . repeat_region 1815 7470 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_564 1 8721 scaffold_564 . biological_region 1140 1142 0.999 + . logic_name=eponine scaffold_564 . repeat_region 1361 1396 . ? . description=trf scaffold_564 . repeat_region 1426 7030 . ? . description=dust scaffold_564 . repeat_region 8340 8391 . ? . description=trf scaffold_564 . repeat_region 8362 8421 . ? . description=trf scaffold_564 ensembl protein_coding_gene 57 1298 . + . ID=Physo109712;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_5640001;logic_name=jgi_physo1_1 scaffold_564 ensembl transcript 57 1298 . + . ID=Physo109712;Parent=Physo109712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_564 . CDS 57 1298 . + 0 ID=Physo109712;Parent=Physo109712;rank=1 scaffold_564 . exon 57 1298 . + . ID=Physo109712.1;Parent=Physo109712;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_560 1 8732 scaffold_560 . biological_region 177 179 0.999 + . logic_name=eponine scaffold_560 . biological_region 180 188 0.999 - . logic_name=eponine scaffold_560 . biological_region 930 935 0.999 + . logic_name=eponine scaffold_560 . biological_region 969 974 0.999 - . logic_name=eponine scaffold_560 . biological_region 1002 1010 0.999 - . logic_name=eponine scaffold_560 . repeat_region 1007 1043 . ? . description=trf scaffold_560 . repeat_region 1730 7117 . ? . description=dust scaffold_560 . repeat_region 7799 7855 . ? . description=trf scaffold_560 . biological_region 8133 8138 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_566 1 8744 scaffold_566 . repeat_region 119 169 . ? . description=trf scaffold_566 . repeat_region 119 171 . ? . description=trf scaffold_566 . repeat_region 232 269 . ? . description=trf scaffold_566 . repeat_region 1478 7786 . ? . description=dust scaffold_566 . biological_region 7841 7843 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_576 1 8746 scaffold_576 . repeat_region 908 957 . ? . description=dust scaffold_576 . biological_region 2131 2135 0.999 + . logic_name=eponine scaffold_576 . repeat_region 2192 3650 . ? . description=dust scaffold_576 . repeat_region 4386 6434 . ? . description=dust scaffold_576 . repeat_region 6460 6467 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_558 1 8750 scaffold_558 . repeat_region 206 213 . ? . description=dust scaffold_558 . repeat_region 444 472 . ? . description=trf scaffold_558 . repeat_region 540 547 . ? . description=dust scaffold_558 . repeat_region 1357 6648 . ? . description=dust scaffold_558 . repeat_region 7820 7833 . ? . description=dust scaffold_558 . repeat_region 8545 8602 . ? . description=trf scaffold_558 ensembl protein_coding_gene 6648 7309 . + . ID=Physo126019;biotype=protein_coding;external_name=estExt_Genewise1.C_5580001;logic_name=jgi_physo1_1 scaffold_558 ensembl transcript 6648 7309 . + . ID=Physo126019;Parent=Physo126019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_558 . exon 6648 7309 . + . ID=Physo126019.1;Parent=Physo126019;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_558 . CDS 6783 7211 . + 0 ID=Physo126019;Parent=Physo126019;rank=1 ##gff-version 3 ##sequence-region scaffold_557 1 8760 scaffold_557 . repeat_region 1372 7480 . ? . description=dust scaffold_557 . repeat_region 7515 7821 . - . description=GypsyPi-1c_LTR scaffold_557 . repeat_region 8643 8666 . ? . description=trf scaffold_557 ensembl protein_coding_gene 592 774 . - . ID=Physo126018;biotype=protein_coding;external_name=estExt_Genewise1.C_5570001;logic_name=jgi_physo1_1 scaffold_557 ensembl transcript 592 774 . - . ID=Physo126018;Parent=Physo126018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_557 . CDS 592 774 . - 0 ID=Physo126018;Parent=Physo126018;rank=1 scaffold_557 . exon 592 774 . - . ID=Physo126018.1;Parent=Physo126018;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_555 1 8775 scaffold_555 . biological_region 537 540 0.999 + . logic_name=eponine scaffold_555 . biological_region 603 610 0.999 + . logic_name=eponine scaffold_555 . biological_region 658 660 0.999 + . logic_name=eponine scaffold_555 . repeat_region 839 6559 . ? . description=dust scaffold_555 . biological_region 7861 7863 0.999 - . logic_name=eponine scaffold_555 . biological_region 8602 8602 0.999 + . logic_name=eponine scaffold_555 . biological_region 8648 8649 0.999 + . logic_name=eponine scaffold_555 ensembl protein_coding_gene 7035 8160 . + . ID=Physo109711;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_5550001;logic_name=jgi_physo1_1 scaffold_555 ensembl transcript 7035 8160 . + . ID=Physo109711;Parent=Physo109711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_555 . CDS 7035 7073 . + 0 ID=Physo109711;Parent=Physo109711;rank=1 scaffold_555 . exon 7035 7073 . + . ID=Physo109711.1;Parent=Physo109711;constitutive=1;rank=1 scaffold_555 . CDS 7093 8160 . + 0 ID=Physo109711;Parent=Physo109711;rank=2 scaffold_555 . exon 7093 8160 . + . ID=Physo109711.2;Parent=Physo109711;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_553 1 8783 scaffold_553 . repeat_region 1453 1469 . ? . description=dust scaffold_553 . repeat_region 1515 1523 . ? . description=dust scaffold_553 . repeat_region 1570 1579 . ? . description=dust scaffold_553 . repeat_region 1984 2278 . + . description=GypsyPi-1c_I-int scaffold_553 . repeat_region 2323 6415 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_550 1 8800 scaffold_550 . repeat_region 721 778 . + . description=(CAGTA)n scaffold_550 . repeat_region 1586 3753 . ? . description=dust scaffold_550 . biological_region 6298 6303 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_549 1 8806 scaffold_549 . repeat_region 600 636 . ? . description=trf scaffold_549 . biological_region 731 738 0.999 - . logic_name=eponine scaffold_549 . biological_region 749 752 0.999 + . logic_name=eponine scaffold_549 . biological_region 767 770 0.999 + . logic_name=eponine scaffold_549 . biological_region 789 795 0.999 + . logic_name=eponine scaffold_549 . biological_region 811 818 0.999 + . logic_name=eponine scaffold_549 . biological_region 852 854 0.999 + . logic_name=eponine scaffold_549 . biological_region 907 912 0.999 - . logic_name=eponine scaffold_549 . biological_region 927 931 0.999 - . logic_name=eponine scaffold_549 . biological_region 1000 1004 0.999 + . logic_name=eponine scaffold_549 . repeat_region 1605 3422 . ? . description=dust scaffold_549 . repeat_region 3423 3517 . ? . description=trf scaffold_549 . repeat_region 3423 3541 . + . description=(CGA)n scaffold_549 . repeat_region 3447 3532 . ? . description=trf scaffold_549 . repeat_region 3450 3526 . ? . description=trf scaffold_549 . repeat_region 3455 3542 . ? . description=trf scaffold_549 . repeat_region 3460 3517 . ? . description=dust scaffold_549 . biological_region 3521 3524 0.999 - . logic_name=eponine scaffold_549 . biological_region 3691 3695 0.999 + . logic_name=eponine scaffold_549 . repeat_region 4696 4800 . ? . description=trf scaffold_549 . biological_region 4857 4862 0.999 + . logic_name=eponine scaffold_549 . repeat_region 4930 4985 . ? . description=trf scaffold_549 . biological_region 5024 5029 0.999 + . logic_name=eponine scaffold_549 . repeat_region 5028 5082 . ? . description=dust scaffold_549 . biological_region 5040 5043 0.999 + . logic_name=eponine scaffold_549 . biological_region 5110 5110 0.999 - . logic_name=eponine scaffold_549 . repeat_region 5281 6378 . ? . description=dust scaffold_549 . biological_region 6542 6544 0.999 + . logic_name=eponine scaffold_549 . biological_region 6607 6610 0.999 + . logic_name=eponine scaffold_549 . repeat_region 6623 6652 . ? . description=trf scaffold_549 . repeat_region 6650 6693 . ? . description=trf scaffold_549 . repeat_region 6660 6721 . ? . description=trf scaffold_549 . biological_region 6732 6732 0.999 - . logic_name=eponine scaffold_549 . biological_region 6785 6785 0.999 - . logic_name=eponine scaffold_549 . repeat_region 8233 8242 . ? . description=dust scaffold_549 ensembl protein_coding_gene 6425 7152 . - . ID=Physo109710;biotype=protein_coding;description=Putative elicitin protein SOJ2C [Source:UniProtKB/TrEMBL%3BAcc:Q2N086];external_name=estExt_fgenesh1_pm.C_5490001;logic_name=jgi_physo1_1 scaffold_549 ensembl transcript 6425 7152 . - . ID=Physo109710;Parent=Physo109710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_549 . exon 6425 7152 . - . ID=Physo109710.1;Parent=Physo109710;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_549 . CDS 6515 7117 . - 0 ID=Physo109710;Parent=Physo109710;rank=1 scaffold_549 ensembl protein_coding_gene 574 4534 . + . ID=Physo145162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5490001;logic_name=jgi_physo1_1 scaffold_549 ensembl transcript 574 4534 . + . ID=Physo145162;Parent=Physo145162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_549 . CDS 574 1599 . + 0 ID=Physo145162;Parent=Physo145162;rank=1 scaffold_549 . exon 574 1599 . + . ID=Physo145162.1;Parent=Physo145162;constitutive=1;rank=1 scaffold_549 . CDS 3462 4130 . + 0 ID=Physo145162;Parent=Physo145162;rank=2 scaffold_549 . exon 3462 4534 . + . ID=Physo145162.2;Parent=Physo145162;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_549 ensembl protein_coding_gene 4800 5280 . - . ID=Physo145163;biotype=protein_coding;description=Putative elicitin protein SOJ5 [Source:UniProtKB/TrEMBL%3BAcc:Q2N080];external_name=estExt_fgenesh1_pg.C_5490002;logic_name=jgi_physo1_1 scaffold_549 ensembl transcript 4800 5280 . - . ID=Physo145163;Parent=Physo145163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_549 . exon 4800 5280 . - . ID=Physo145163.1;Parent=Physo145163;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_549 . CDS 4884 5279 . - 0 ID=Physo145163;Parent=Physo145163;rank=1 scaffold_549 ensembl protein_coding_gene 8372 8806 . + . ID=Physo145165;biotype=protein_coding;description=Putative elicitin protein SOJ2D [Source:UniProtKB/TrEMBL%3BAcc:Q2N085];external_name=estExt_fgenesh1_pg.C_5490004;logic_name=jgi_physo1_1 scaffold_549 ensembl transcript 8372 8806 . + . ID=Physo145165;Parent=Physo145165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_549 . exon 8372 8806 . + . ID=Physo145165.1;Parent=Physo145165;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_549 . CDS 8407 8805 . + 0 ID=Physo145165;Parent=Physo145165;rank=1 ##gff-version 3 ##sequence-region scaffold_556 1 8822 scaffold_556 . repeat_region 2002 6292 . ? . description=dust scaffold_556 . biological_region 6603 6605 0.999 + . logic_name=eponine scaffold_556 . biological_region 6809 6812 0.999 - . logic_name=eponine scaffold_556 . repeat_region 7576 7625 . ? . description=dust scaffold_556 . repeat_region 8335 8409 . ? . description=trf scaffold_556 ensembl protein_coding_gene 6507 7277 . + . ID=Physo145169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5560001;logic_name=jgi_physo1_1 scaffold_556 ensembl transcript 6507 7277 . + . ID=Physo145169;Parent=Physo145169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_556 . CDS 6507 7277 . + 0 ID=Physo145169;Parent=Physo145169;rank=1 scaffold_556 . exon 6507 7277 . + . ID=Physo145169.1;Parent=Physo145169;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_554 1 8849 scaffold_554 . repeat_region 1179 1187 . ? . description=dust scaffold_554 . biological_region 1438 1442 0.999 - . logic_name=eponine scaffold_554 . repeat_region 3706 3713 . ? . description=dust scaffold_554 . repeat_region 5001 5008 . ? . description=dust scaffold_554 . repeat_region 5308 6004 . ? . description=trf scaffold_554 . repeat_region 6005 6839 . ? . description=dust scaffold_554 . repeat_region 6916 6965 . ? . description=trf scaffold_554 . biological_region 7183 7188 0.999 + . logic_name=eponine scaffold_554 . repeat_region 7625 7992 . - . description=GypsyPi-1c_I-int scaffold_554 . repeat_region 7997 8046 . ? . description=dust scaffold_554 . repeat_region 8795 8832 . ? . description=trf scaffold_554 ensembl protein_coding_gene 963 2695 . + . ID=Physo145166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5540001;logic_name=jgi_physo1_1 scaffold_554 ensembl transcript 963 2695 . + . ID=Physo145166;Parent=Physo145166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_554 . CDS 963 984 . + 0 ID=Physo145166;Parent=Physo145166;rank=1 scaffold_554 . exon 963 984 . + . ID=Physo145166.1;Parent=Physo145166;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_554 . CDS 1309 1507 . + 0 ID=Physo145166;Parent=Physo145166;rank=2 scaffold_554 . exon 1309 1507 . + . ID=Physo145166.2;Parent=Physo145166;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_554 . CDS 1584 1675 . + 0 ID=Physo145166;Parent=Physo145166;rank=3 scaffold_554 . exon 1584 1675 . + . ID=Physo145166.3;Parent=Physo145166;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_554 . CDS 1891 1995 . + 0 ID=Physo145166;Parent=Physo145166;rank=4 scaffold_554 . exon 1891 1995 . + . ID=Physo145166.4;Parent=Physo145166;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_554 . CDS 2072 2304 . + 0 ID=Physo145166;Parent=Physo145166;rank=5 scaffold_554 . exon 2072 2304 . + . ID=Physo145166.5;Parent=Physo145166;constitutive=1;ensembl_phase=1;rank=5 scaffold_554 . CDS 2477 2695 . + 0 ID=Physo145166;Parent=Physo145166;rank=6 scaffold_554 . exon 2477 2695 . + . ID=Physo145166.6;Parent=Physo145166;constitutive=1;rank=6 scaffold_554 ensembl protein_coding_gene 5129 8684 . + . ID=Physo145167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5540002;logic_name=jgi_physo1_1 scaffold_554 ensembl transcript 5129 8684 . + . ID=Physo145167;Parent=Physo145167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_554 . CDS 5129 5185 . + 0 ID=Physo145167;Parent=Physo145167;rank=1 scaffold_554 . exon 5129 5185 . + . ID=Physo145167.1;Parent=Physo145167;constitutive=1;rank=1 scaffold_554 . CDS 5268 5987 . + 0 ID=Physo145167;Parent=Physo145167;rank=2 scaffold_554 . exon 5268 5987 . + . ID=Physo145167.2;Parent=Physo145167;constitutive=1;rank=2 scaffold_554 . CDS 6986 7946 . + 0 ID=Physo145167;Parent=Physo145167;rank=3 scaffold_554 . exon 6986 7946 . + . ID=Physo145167.3;Parent=Physo145167;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_554 . CDS 8094 8370 . + 0 ID=Physo145167;Parent=Physo145167;rank=4 scaffold_554 . exon 8094 8370 . + . ID=Physo145167.4;Parent=Physo145167;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_554 . CDS 8443 8614 . + 0 ID=Physo145167;Parent=Physo145167;rank=5 scaffold_554 . exon 8443 8684 . + . ID=Physo145167.5;Parent=Physo145167;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 ##gff-version 3 ##sequence-region scaffold_546 1 8850 scaffold_546 . biological_region 485 489 0.999 + . logic_name=eponine scaffold_546 . biological_region 575 580 0.999 - . logic_name=eponine scaffold_546 . biological_region 601 604 0.999 - . logic_name=eponine scaffold_546 . repeat_region 1120 6160 . ? . description=dust scaffold_546 . repeat_region 6631 6741 . ? . description=trf scaffold_546 . repeat_region 8201 8208 . ? . description=dust scaffold_546 . repeat_region 8701 8729 . ? . description=trf scaffold_546 ensembl protein_coding_gene 6289 6453 . + . ID=Physo125988;biotype=protein_coding;external_name=estExt_Genewise1.C_5460001;logic_name=jgi_physo1_1 scaffold_546 ensembl transcript 6289 6453 . + . ID=Physo125988;Parent=Physo125988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_546 . exon 6289 6453 . + . ID=Physo125988.1;Parent=Physo125988;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_546 . CDS 6324 6452 . + 0 ID=Physo125988;Parent=Physo125988;rank=1 scaffold_546 ensembl protein_coding_gene 93 655 . + . ID=Physo145161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5460001;logic_name=jgi_physo1_1 scaffold_546 ensembl transcript 93 655 . + . ID=Physo145161;Parent=Physo145161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_546 . exon 93 655 . + . ID=Physo145161.1;Parent=Physo145161;constitutive=1;ensembl_phase=-1;rank=1 scaffold_546 . CDS 98 655 . + 0 ID=Physo145161;Parent=Physo145161;rank=1 ##gff-version 3 ##sequence-region scaffold_548 1 8866 scaffold_548 . repeat_region 3 19 . ? . description=dust scaffold_548 . biological_region 384 389 0.999 + . logic_name=eponine scaffold_548 . biological_region 404 405 0.999 + . logic_name=eponine scaffold_548 . biological_region 500 506 0.999 - . logic_name=eponine scaffold_548 . biological_region 1052 1054 0.999 + . logic_name=eponine scaffold_548 . repeat_region 1560 1609 . ? . description=dust scaffold_548 . repeat_region 1670 2419 . - . description=GypsyPi-1c_I-int scaffold_548 . repeat_region 2636 7224 . ? . description=dust scaffold_548 . repeat_region 7225 8864 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_559 1 8868 scaffold_559 . repeat_region 1012 1057 . ? . description=trf scaffold_559 . biological_region 1451 1452 0.999 - . logic_name=eponine scaffold_559 . repeat_region 1757 2566 . ? . description=dust scaffold_559 . repeat_region 3940 6756 . ? . description=dust scaffold_559 . repeat_region 8527 8535 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_572 1 8871 scaffold_572 . repeat_region 1621 4790 . ? . description=dust scaffold_572 . repeat_region 5067 5152 . ? . description=trf scaffold_572 . biological_region 5599 5601 0.999 + . logic_name=eponine scaffold_572 . repeat_region 5883 7742 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_542 1 8872 scaffold_542 . repeat_region 1729 6942 . ? . description=dust scaffold_542 . biological_region 7947 7950 0.999 + . logic_name=eponine scaffold_542 . biological_region 8212 8216 0.999 - . logic_name=eponine scaffold_542 . biological_region 8678 8682 0.999 + . logic_name=eponine scaffold_542 ensembl protein_coding_gene 173 974 . + . ID=Physo145155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5420001;logic_name=jgi_physo1_1 scaffold_542 ensembl transcript 173 974 . + . ID=Physo145155;Parent=Physo145155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_542 . exon 173 457 . + . ID=Physo145155.1;Parent=Physo145155;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_542 . CDS 202 457 . + 0 ID=Physo145155;Parent=Physo145155;rank=1 scaffold_542 . CDS 526 974 . + 0 ID=Physo145155;Parent=Physo145155;rank=2 scaffold_542 . exon 526 974 . + . ID=Physo145155.2;Parent=Physo145155;constitutive=1;ensembl_phase=1;rank=2 scaffold_542 ensembl protein_coding_gene 7777 8405 . - . ID=Physo145156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5420002;logic_name=jgi_physo1_1 scaffold_542 ensembl transcript 7777 8405 . - . ID=Physo145156;Parent=Physo145156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_542 . CDS 7777 8059 . - 0 ID=Physo145156;Parent=Physo145156;rank=2 scaffold_542 . exon 7777 8059 . - . ID=Physo145156.2;Parent=Physo145156;constitutive=1;ensembl_phase=2;rank=2 scaffold_542 . CDS 8113 8405 . - 0 ID=Physo145156;Parent=Physo145156;rank=1 scaffold_542 . exon 8113 8405 . - . ID=Physo145156.1;Parent=Physo145156;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_547 1 8875 scaffold_547 . repeat_region 4 780 . + . description=GypsyPi-1c_I-int scaffold_547 . biological_region 163 167 0.999 - . logic_name=eponine scaffold_547 . repeat_region 801 850 . ? . description=dust scaffold_547 . biological_region 1442 1443 0.999 - . logic_name=eponine scaffold_547 . biological_region 1801 1806 0.999 - . logic_name=eponine scaffold_547 . biological_region 1999 2002 0.999 - . logic_name=eponine scaffold_547 . repeat_region 2327 6692 . ? . description=dust scaffold_547 . repeat_region 7118 7125 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_541 1 8879 scaffold_541 . repeat_region 1 2342 . + . description=Gypsy-2-I_PI-int scaffold_541 . repeat_region 2346 3569 . ? . description=dust scaffold_541 . repeat_region 3592 3782 . + . description=Gypsy-2-I_PI-int scaffold_541 . repeat_region 3861 3976 . + . description=Gypsy-1-LTR_PI scaffold_541 . repeat_region 6770 6899 . - . description=Gypsy-2-LTR_PI scaffold_541 . biological_region 7308 7310 0.999 - . logic_name=eponine scaffold_541 . repeat_region 8762 8879 . - . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_551 1 8885 scaffold_551 . repeat_region 385 435 . ? . description=trf scaffold_551 . repeat_region 385 437 . ? . description=trf scaffold_551 . repeat_region 498 535 . ? . description=trf scaffold_551 . repeat_region 1609 1659 . ? . description=trf scaffold_551 . repeat_region 1609 1661 . ? . description=trf scaffold_551 . repeat_region 1722 1759 . ? . description=trf scaffold_551 . repeat_region 3770 3820 . ? . description=trf scaffold_551 . repeat_region 3770 3822 . ? . description=trf scaffold_551 . repeat_region 3883 3918 . ? . description=trf scaffold_551 . repeat_region 3986 7764 . ? . description=dust scaffold_551 . repeat_region 8598 8633 . ? . description=trf scaffold_551 . repeat_region 8694 8746 . ? . description=trf scaffold_551 . repeat_region 8694 8746 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_508 1 8886 scaffold_508 . repeat_region 1 1345 . - . description=Polinton-1_PI scaffold_508 . repeat_region 1538 3680 . - . description=Polinton-1_PI scaffold_508 . repeat_region 3701 7615 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_538 1 8896 scaffold_538 . repeat_region 561 1009 . - . description=GypsyPi-1c_I-int scaffold_538 . repeat_region 1017 4971 . ? . description=dust scaffold_538 . biological_region 5625 5628 0.999 - . logic_name=eponine scaffold_538 . biological_region 6477 6478 0.999 - . logic_name=eponine scaffold_538 . biological_region 7275 7276 0.999 - . logic_name=eponine scaffold_538 . repeat_region 7865 8895 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_981 1 8897 scaffold_981 . repeat_region 151 163 . ? . description=dust scaffold_981 . biological_region 651 651 0.999 + . logic_name=eponine scaffold_981 . biological_region 766 769 0.999 + . logic_name=eponine scaffold_981 . repeat_region 770 797 . ? . description=trf scaffold_981 . repeat_region 970 1019 . ? . description=dust scaffold_981 . repeat_region 1558 1585 . ? . description=trf scaffold_981 . biological_region 1587 1590 0.999 - . logic_name=eponine scaffold_981 . repeat_region 1887 1924 . ? . description=trf scaffold_981 . repeat_region 2071 2090 . ? . description=dust scaffold_981 . repeat_region 2071 2090 . ? . description=trf scaffold_981 . repeat_region 2275 2284 . ? . description=dust scaffold_981 . biological_region 2606 2608 0.999 + . logic_name=eponine scaffold_981 . biological_region 2749 2753 0.999 + . logic_name=eponine scaffold_981 . biological_region 2772 2772 0.999 + . logic_name=eponine scaffold_981 . repeat_region 2891 2918 . ? . description=trf scaffold_981 . repeat_region 2988 3037 . ? . description=dust scaffold_981 . repeat_region 3044 3077 . ? . description=trf scaffold_981 . biological_region 3375 3378 0.999 + . logic_name=eponine scaffold_981 . repeat_region 3379 3406 . ? . description=trf scaffold_981 . repeat_region 5094 6233 . ? . description=dust scaffold_981 . repeat_region 8643 8657 . ? . description=dust scaffold_981 ensembl protein_coding_gene 6778 7578 . + . ID=Physo109728;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_9810001;logic_name=jgi_physo1_1 scaffold_981 ensembl transcript 6778 7578 . + . ID=Physo109728;Parent=Physo109728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_981 . CDS 6778 7578 . + 0 ID=Physo109728;Parent=Physo109728;rank=1 scaffold_981 . exon 6778 7578 . + . ID=Physo109728.1;Parent=Physo109728;constitutive=1;rank=1 scaffold_981 ensembl protein_coding_gene 7813 8319 . + . ID=Physo126286;biotype=protein_coding;external_name=estExt_Genewise1.C_9810004;logic_name=jgi_physo1_1 scaffold_981 ensembl transcript 7813 8319 . + . ID=Physo126286;Parent=Physo126286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_981 . exon 7813 8319 . + . ID=Physo126286.1;Parent=Physo126286;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_981 . CDS 7869 8150 . + 0 ID=Physo126286;Parent=Physo126286;rank=1 scaffold_981 ensembl protein_coding_gene 1401 2125 . - . ID=Physo145304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9810001;logic_name=jgi_physo1_1 scaffold_981 ensembl transcript 1401 2125 . - . ID=Physo145304;Parent=Physo145304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_981 . exon 1401 2125 . - . ID=Physo145304.1;Parent=Physo145304;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_981 . CDS 1463 2125 . - 0 ID=Physo145304;Parent=Physo145304;rank=1 scaffold_981 ensembl protein_coding_gene 2583 3563 . + . ID=Physo145305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_9810002;logic_name=jgi_physo1_1 scaffold_981 ensembl transcript 2583 3563 . + . ID=Physo145305;Parent=Physo145305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_981 . CDS 2583 2628 . + 0 ID=Physo145305;Parent=Physo145305;rank=1 scaffold_981 . exon 2583 2628 . + . ID=Physo145305.1;Parent=Physo145305;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_981 . CDS 2736 2930 . + 0 ID=Physo145305;Parent=Physo145305;rank=2 scaffold_981 . exon 2736 2930 . + . ID=Physo145305.2;Parent=Physo145305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_981 . CDS 3041 3501 . + 0 ID=Physo145305;Parent=Physo145305;rank=3 scaffold_981 . exon 3041 3563 . + . ID=Physo145305.3;Parent=Physo145305;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_544 1 8904 scaffold_544 . biological_region 816 816 0.999 + . logic_name=eponine scaffold_544 . biological_region 968 971 0.999 + . logic_name=eponine scaffold_544 . biological_region 1001 1005 0.999 + . logic_name=eponine scaffold_544 . biological_region 1029 1030 0.999 + . logic_name=eponine scaffold_544 . biological_region 1054 1063 0.999 + . logic_name=eponine scaffold_544 . repeat_region 2238 2775 . ? . description=dust scaffold_544 . repeat_region 2813 2831 . ? . description=dust scaffold_544 . repeat_region 3541 3554 . ? . description=dust scaffold_544 . repeat_region 4120 5955 . ? . description=dust scaffold_544 . biological_region 6020 6023 0.999 + . logic_name=eponine scaffold_544 . biological_region 6065 6069 0.999 + . logic_name=eponine scaffold_544 . repeat_region 7183 7232 . ? . description=dust scaffold_544 . biological_region 7889 7891 0.999 - . logic_name=eponine scaffold_544 . biological_region 7935 7939 0.999 - . logic_name=eponine scaffold_544 . biological_region 8664 8666 0.999 - . logic_name=eponine scaffold_544 ensembl protein_coding_gene 7 528 . + . ID=Physo145157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5440001;logic_name=jgi_physo1_1 scaffold_544 ensembl transcript 7 528 . + . ID=Physo145157;Parent=Physo145157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_544 . CDS 7 528 . + 0 ID=Physo145157;Parent=Physo145157;rank=1 scaffold_544 . exon 7 528 . + . ID=Physo145157.1;Parent=Physo145157;constitutive=1;rank=1 scaffold_544 ensembl protein_coding_gene 765 1500 . - . ID=Physo145158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5440002;logic_name=jgi_physo1_1 scaffold_544 ensembl transcript 765 1500 . - . ID=Physo145158;Parent=Physo145158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_544 . CDS 765 1346 . - 0 ID=Physo145158;Parent=Physo145158;rank=2 scaffold_544 . exon 765 1346 . - . ID=Physo145158.2;Parent=Physo145158;constitutive=1;rank=2 scaffold_544 . CDS 1369 1500 . - 0 ID=Physo145158;Parent=Physo145158;rank=1 scaffold_544 . exon 1369 1500 . - . ID=Physo145158.1;Parent=Physo145158;constitutive=1;rank=1 scaffold_544 ensembl protein_coding_gene 2798 3476 . - . ID=Physo145159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5440003;logic_name=jgi_physo1_1 scaffold_544 ensembl transcript 2798 3476 . - . ID=Physo145159;Parent=Physo145159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_544 . CDS 2798 3311 . - 0 ID=Physo145159;Parent=Physo145159;rank=2 scaffold_544 . exon 2798 3311 . - . ID=Physo145159.2;Parent=Physo145159;constitutive=1;ensembl_phase=2;rank=2 scaffold_544 . CDS 3406 3476 . - 0 ID=Physo145159;Parent=Physo145159;rank=1 scaffold_544 . exon 3406 3476 . - . ID=Physo145159.1;Parent=Physo145159;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_544 ensembl protein_coding_gene 7071 8904 . - . ID=Physo145160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5440004;logic_name=jgi_physo1_1 scaffold_544 ensembl transcript 7071 8904 . - . ID=Physo145160;Parent=Physo145160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_544 . CDS 7071 7146 . - 0 ID=Physo145160;Parent=Physo145160;rank=2 scaffold_544 . exon 7071 7146 . - . ID=Physo145160.2;Parent=Physo145160;constitutive=1;ensembl_phase=2;rank=2 scaffold_544 . CDS 7236 8659 . - 0 ID=Physo145160;Parent=Physo145160;rank=1 scaffold_544 . exon 7236 8904 . - . ID=Physo145160.1;Parent=Physo145160;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_536 1 8907 scaffold_536 . repeat_region 793 842 . ? . description=dust scaffold_536 . biological_region 931 933 0.999 + . logic_name=eponine scaffold_536 . biological_region 1218 1222 0.999 + . logic_name=eponine scaffold_536 . biological_region 1271 1276 0.999 - . logic_name=eponine scaffold_536 . biological_region 1566 1568 0.999 - . logic_name=eponine scaffold_536 . biological_region 1589 1593 0.999 + . logic_name=eponine scaffold_536 . biological_region 1636 1637 0.999 - . logic_name=eponine scaffold_536 . biological_region 1705 1712 0.999 - . logic_name=eponine scaffold_536 . repeat_region 1847 1896 . ? . description=dust scaffold_536 . repeat_region 4185 4658 . ? . description=dust scaffold_536 . repeat_region 6384 7350 . ? . description=dust scaffold_536 ensembl protein_coding_gene 1026 1798 . + . ID=Physo109708;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_5360001;logic_name=jgi_physo1_1 scaffold_536 ensembl transcript 1026 1798 . + . ID=Physo109708;Parent=Physo109708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_536 . exon 1026 1053 . + . ID=Physo109708.1;Parent=Physo109708;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_536 . CDS 1028 1053 . + 0 ID=Physo109708;Parent=Physo109708;rank=1 scaffold_536 . CDS 1120 1132 . + 0 ID=Physo109708;Parent=Physo109708;rank=2 scaffold_536 . exon 1120 1132 . + . ID=Physo109708.2;Parent=Physo109708;constitutive=1;ensembl_phase=2;rank=2 scaffold_536 . CDS 1175 1798 . + 0 ID=Physo109708;Parent=Physo109708;rank=3 scaffold_536 . exon 1175 1798 . + . ID=Physo109708.3;Parent=Physo109708;constitutive=1;rank=3 scaffold_536 ensembl protein_coding_gene 12 696 . - . ID=Physo145146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5360001;logic_name=jgi_physo1_1 scaffold_536 ensembl transcript 12 696 . - . ID=Physo145146;Parent=Physo145146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_536 . CDS 12 210 . - 0 ID=Physo145146;Parent=Physo145146;rank=4 scaffold_536 . exon 12 210 . - . ID=Physo145146.4;Parent=Physo145146;constitutive=1;ensembl_phase=2;rank=4 scaffold_536 . CDS 252 313 . - 0 ID=Physo145146;Parent=Physo145146;rank=3 scaffold_536 . exon 252 313 . - . ID=Physo145146.3;Parent=Physo145146;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_536 . CDS 375 606 . - 0 ID=Physo145146;Parent=Physo145146;rank=2 scaffold_536 . exon 375 606 . - . ID=Physo145146.2;Parent=Physo145146;constitutive=1;ensembl_phase=2;rank=2 scaffold_536 . CDS 668 696 . - 0 ID=Physo145146;Parent=Physo145146;rank=1 scaffold_536 . exon 668 696 . - . ID=Physo145146.1;Parent=Physo145146;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_536 ensembl protein_coding_gene 5687 6187 . - . ID=Physo145148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5360003;logic_name=jgi_physo1_1 scaffold_536 ensembl transcript 5687 6187 . - . ID=Physo145148;Parent=Physo145148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_536 . CDS 5687 5903 . - 0 ID=Physo145148;Parent=Physo145148;rank=3 scaffold_536 . exon 5687 5903 . - . ID=Physo145148.3;Parent=Physo145148;constitutive=1;ensembl_phase=2;rank=3 scaffold_536 . CDS 5945 6006 . - 0 ID=Physo145148;Parent=Physo145148;rank=2 scaffold_536 . exon 5945 6006 . - . ID=Physo145148.2;Parent=Physo145148;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_536 . CDS 6068 6187 . - 0 ID=Physo145148;Parent=Physo145148;rank=1 scaffold_536 . exon 6068 6187 . - . ID=Physo145148.1;Parent=Physo145148;constitutive=1;rank=1 scaffold_536 ensembl protein_coding_gene 7615 8275 . + . ID=Physo145149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5360004;logic_name=jgi_physo1_1 scaffold_536 ensembl transcript 7615 8275 . + . ID=Physo145149;Parent=Physo145149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_536 . CDS 7615 7784 . + 0 ID=Physo145149;Parent=Physo145149;rank=1 scaffold_536 . exon 7615 7784 . + . ID=Physo145149.1;Parent=Physo145149;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_536 . CDS 7921 8275 . + 0 ID=Physo145149;Parent=Physo145149;rank=2 scaffold_536 . exon 7921 8275 . + . ID=Physo145149.2;Parent=Physo145149;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_535 1 8926 scaffold_535 . repeat_region 3914 4880 . ? . description=dust scaffold_535 . repeat_region 5971 7551 . ? . description=dust scaffold_535 ensembl protein_coding_gene 7864 8412 . - . ID=Physo125970;biotype=protein_coding;external_name=estExt_Genewise1.C_5350002;logic_name=jgi_physo1_1 scaffold_535 ensembl transcript 7864 8412 . - . ID=Physo125970;Parent=Physo125970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_535 . CDS 7864 8358 . - 0 ID=Physo125970;Parent=Physo125970;rank=1 scaffold_535 . exon 7864 8412 . - . ID=Physo125970.1;Parent=Physo125970;constitutive=1;ensembl_phase=-1;rank=1 scaffold_535 ensembl protein_coding_gene 12 1508 . - . ID=Physo145144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5350001;logic_name=jgi_physo1_1 scaffold_535 ensembl transcript 12 1508 . - . ID=Physo145144;Parent=Physo145144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_535 . CDS 12 1508 . - 0 ID=Physo145144;Parent=Physo145144;rank=1 scaffold_535 . exon 12 1508 . - . ID=Physo145144.1;Parent=Physo145144;constitutive=1;rank=1 scaffold_535 ensembl protein_coding_gene 1993 3816 . - . ID=Physo145145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5350002;logic_name=jgi_physo1_1 scaffold_535 ensembl transcript 1993 3816 . - . ID=Physo145145;Parent=Physo145145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_535 . CDS 1993 3816 . - 0 ID=Physo145145;Parent=Physo145145;rank=1 scaffold_535 . exon 1993 3816 . - . ID=Physo145145.1;Parent=Physo145145;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_543 1 8926 scaffold_543 . repeat_region 2032 8239 . ? . description=dust scaffold_543 . biological_region 8607 8613 0.999 + . logic_name=eponine scaffold_543 . biological_region 8756 8758 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_562 1 8941 scaffold_562 . repeat_region 69 372 . - . description=GypsyPi-1c_LTR scaffold_562 . biological_region 629 632 0.999 + . logic_name=eponine scaffold_562 . biological_region 825 830 0.999 + . logic_name=eponine scaffold_562 . repeat_region 1246 2359 . ? . description=dust scaffold_562 . repeat_region 2369 3489 . - . description=GypsyPi-1c_I-int scaffold_562 . biological_region 2884 2889 0.999 - . logic_name=eponine scaffold_562 . repeat_region 3491 3791 . ? . description=dust scaffold_562 . repeat_region 3793 6207 . - . description=GypsyPi-1c_I-int scaffold_562 . repeat_region 6208 6565 . ? . description=dust scaffold_562 . repeat_region 6566 8253 . - . description=GypsyPi-1c_I-int scaffold_562 . biological_region 7732 7735 0.999 + . logic_name=eponine scaffold_562 . biological_region 7750 7754 0.999 - . logic_name=eponine scaffold_562 . repeat_region 8254 8436 . - . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_540 1 8944 scaffold_540 . repeat_region 1498 1547 . ? . description=dust scaffold_540 . biological_region 1687 1690 0.999 + . logic_name=eponine scaffold_540 . biological_region 2111 2112 0.999 - . logic_name=eponine scaffold_540 . repeat_region 2432 5973 . ? . description=dust scaffold_540 . repeat_region 6794 6822 . ? . description=trf scaffold_540 . repeat_region 6831 6863 . ? . description=trf scaffold_540 . repeat_region 7322 7330 . ? . description=dust scaffold_540 . repeat_region 7470 7501 . ? . description=trf scaffold_540 ensembl protein_coding_gene 5974 6320 . + . ID=Physo125982;biotype=protein_coding;external_name=estExt_Genewise1.C_5400002;logic_name=jgi_physo1_1 scaffold_540 ensembl transcript 5974 6320 . + . ID=Physo125982;Parent=Physo125982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_540 . exon 5974 6181 . + . ID=Physo125982.1;Parent=Physo125982;constitutive=1;ensembl_phase=-1;rank=1 scaffold_540 . CDS 5975 6181 . + 0 ID=Physo125982;Parent=Physo125982;rank=1 scaffold_540 . CDS 6215 6319 . + 0 ID=Physo125982;Parent=Physo125982;rank=2 scaffold_540 . exon 6215 6320 . + . ID=Physo125982.2;Parent=Physo125982;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_540 ensembl protein_coding_gene 379 1284 . + . ID=Physo125983;biotype=protein_coding;external_name=estExt_Genewise1.C_5400003;logic_name=jgi_physo1_1 scaffold_540 ensembl transcript 379 1284 . + . ID=Physo125983;Parent=Physo125983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_540 . CDS 379 405 . + 0 ID=Physo125983;Parent=Physo125983;rank=1 scaffold_540 . exon 379 405 . + . ID=Physo125983.1;Parent=Physo125983;constitutive=1;rank=1 scaffold_540 . CDS 490 501 . + 0 ID=Physo125983;Parent=Physo125983;rank=2 scaffold_540 . exon 490 501 . + . ID=Physo125983.2;Parent=Physo125983;constitutive=1;rank=2 scaffold_540 . CDS 547 1284 . + 0 ID=Physo125983;Parent=Physo125983;rank=3 scaffold_540 . exon 547 1284 . + . ID=Physo125983.3;Parent=Physo125983;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_533 1 8948 scaffold_533 . repeat_region 208 1472 . - . description=Gypsy-1-I_PI-int scaffold_533 . repeat_region 1514 6673 . ? . description=dust scaffold_533 . repeat_region 6834 6841 . ? . description=dust scaffold_533 . repeat_region 8444 8451 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_534 1 8948 scaffold_534 . repeat_region 41 73 . ? . description=trf scaffold_534 . repeat_region 1846 3723 . ? . description=dust scaffold_534 . biological_region 4252 4256 0.999 - . logic_name=eponine scaffold_534 . biological_region 4699 4703 0.999 + . logic_name=eponine scaffold_534 . biological_region 4723 4728 0.999 - . logic_name=eponine scaffold_534 . repeat_region 4777 4800 . ? . description=trf scaffold_534 . repeat_region 4990 5910 . ? . description=dust scaffold_534 . repeat_region 8427 8730 . - . description=GypsyPi-1c_LTR scaffold_534 . repeat_region 8731 8922 . - . description=GypsyPi-1c_I-int scaffold_534 ensembl protein_coding_gene 4267 4950 . - . ID=Physo145143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5340001;logic_name=jgi_physo1_1 scaffold_534 ensembl transcript 4267 4950 . - . ID=Physo145143;Parent=Physo145143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_534 . CDS 4267 4869 . - 0 ID=Physo145143;Parent=Physo145143;rank=2 scaffold_534 . exon 4267 4869 . - . ID=Physo145143.2;Parent=Physo145143;constitutive=1;rank=2 scaffold_534 . CDS 4930 4950 . - 0 ID=Physo145143;Parent=Physo145143;rank=1 scaffold_534 . exon 4930 4950 . - . ID=Physo145143.1;Parent=Physo145143;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_532 1 8954 scaffold_532 . repeat_region 4284 5102 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_552 1 8955 scaffold_552 . repeat_region 1950 3374 . ? . description=dust scaffold_552 . repeat_region 4786 4958 . ? . description=dust scaffold_552 . repeat_region 5695 5732 . ? . description=trf scaffold_552 . repeat_region 5695 5744 . ? . description=trf scaffold_552 . biological_region 6322 6325 0.999 + . logic_name=eponine scaffold_552 . biological_region 8221 8222 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_526 1 9020 scaffold_526 . repeat_region 1340 4409 . ? . description=dust scaffold_526 . repeat_region 4948 4956 . ? . description=dust scaffold_526 . repeat_region 5479 6524 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_527 1 9020 scaffold_527 . repeat_region 1814 4042 . ? . description=dust scaffold_527 . repeat_region 5747 5794 . ? . description=trf scaffold_527 . repeat_region 6305 6414 . ? . description=dust scaffold_527 ensembl protein_coding_gene 4709 5056 . + . ID=Physo125967;biotype=protein_coding;external_name=estExt_Genewise1.C_5270001;logic_name=jgi_physo1_1 scaffold_527 ensembl transcript 4709 5056 . + . ID=Physo125967;Parent=Physo125967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_527 . exon 4709 5056 . + . ID=Physo125967.1;Parent=Physo125967;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_527 . CDS 4737 4958 . + 0 ID=Physo125967;Parent=Physo125967;rank=1 ##gff-version 3 ##sequence-region scaffold_525 1 9024 scaffold_525 . repeat_region 5016 5052 . ? . description=trf scaffold_525 . biological_region 7891 7894 0.999 + . logic_name=eponine scaffold_525 . biological_region 7995 8000 0.999 + . logic_name=eponine scaffold_525 . biological_region 8516 8520 0.999 + . logic_name=eponine scaffold_525 . biological_region 8539 8544 0.999 + . logic_name=eponine scaffold_525 . biological_region 8596 8597 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_530 1 9024 scaffold_530 . repeat_region 838 887 . ? . description=dust scaffold_530 . repeat_region 2216 6804 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_524 1 9029 scaffold_524 . biological_region 2863 2871 0.999 + . logic_name=eponine scaffold_524 . biological_region 2926 2929 0.999 - . logic_name=eponine scaffold_524 . biological_region 2970 2974 0.999 - . logic_name=eponine scaffold_524 . biological_region 3004 3006 0.999 - . logic_name=eponine scaffold_524 . repeat_region 3066 3103 . ? . description=dust scaffold_524 . repeat_region 3067 3106 . ? . description=trf scaffold_524 . repeat_region 3068 3103 . ? . description=trf scaffold_524 . repeat_region 4380 4432 . ? . description=trf scaffold_524 . biological_region 5378 5382 0.999 + . logic_name=eponine scaffold_524 . biological_region 6464 6474 0.999 - . logic_name=eponine scaffold_524 . repeat_region 6684 6725 . ? . description=trf scaffold_524 . biological_region 6829 6831 0.999 + . logic_name=eponine scaffold_524 . biological_region 7971 7972 0.999 + . logic_name=eponine scaffold_524 . biological_region 8719 8724 0.999 + . logic_name=eponine scaffold_524 . biological_region 8772 8773 0.999 - . logic_name=eponine scaffold_524 . biological_region 8842 8846 0.999 + . logic_name=eponine scaffold_524 . biological_region 8925 8927 0.999 - . logic_name=eponine scaffold_524 ensembl protein_coding_gene 1033 1839 . + . ID=Physo145138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5240001;logic_name=jgi_physo1_1 scaffold_524 ensembl transcript 1033 1839 . + . ID=Physo145138;Parent=Physo145138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_524 . CDS 1033 1497 . + 0 ID=Physo145138;Parent=Physo145138;rank=1 scaffold_524 . exon 1033 1497 . + . ID=Physo145138.1;Parent=Physo145138;constitutive=1;rank=1 scaffold_524 . CDS 1552 1839 . + 0 ID=Physo145138;Parent=Physo145138;rank=2 scaffold_524 . exon 1552 1839 . + . ID=Physo145138.2;Parent=Physo145138;constitutive=1;rank=2 scaffold_524 ensembl protein_coding_gene 2729 4207 . + . ID=Physo145139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5240002;logic_name=jgi_physo1_1 scaffold_524 ensembl transcript 2729 4207 . + . ID=Physo145139;Parent=Physo145139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_524 . CDS 2729 2751 . + 0 ID=Physo145139;Parent=Physo145139;rank=1 scaffold_524 . exon 2729 2751 . + . ID=Physo145139.1;Parent=Physo145139;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_524 . CDS 2872 4207 . + 0 ID=Physo145139;Parent=Physo145139;rank=2 scaffold_524 . exon 2872 4207 . + . ID=Physo145139.2;Parent=Physo145139;constitutive=1;ensembl_phase=2;rank=2 scaffold_524 ensembl protein_coding_gene 5552 8261 . + . ID=Physo145140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5240003;logic_name=jgi_physo1_1 scaffold_524 ensembl transcript 5552 8261 . + . ID=Physo145140;Parent=Physo145140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_524 . CDS 5552 5637 . + 0 ID=Physo145140;Parent=Physo145140;rank=1 scaffold_524 . exon 5552 5637 . + . ID=Physo145140.1;Parent=Physo145140;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_524 . CDS 6143 8261 . + 0 ID=Physo145140;Parent=Physo145140;rank=2 scaffold_524 . exon 6143 8261 . + . ID=Physo145140.2;Parent=Physo145140;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_523 1 9044 scaffold_523 . repeat_region 693 2359 . ? . description=dust scaffold_523 . repeat_region 2361 2408 . ? . description=trf scaffold_523 . biological_region 3751 3753 0.999 - . logic_name=eponine scaffold_523 . biological_region 3804 3808 0.999 + . logic_name=eponine scaffold_523 . biological_region 3829 3832 0.999 + . logic_name=eponine scaffold_523 . biological_region 3951 3957 0.999 - . logic_name=eponine scaffold_523 . repeat_region 6225 6249 . ? . description=dust scaffold_523 . repeat_region 6225 6249 . ? . description=trf scaffold_523 . repeat_region 6438 6445 . ? . description=dust scaffold_523 . repeat_region 6963 6970 . ? . description=dust scaffold_523 . biological_region 8932 8937 0.999 + . logic_name=eponine scaffold_523 . biological_region 8952 8953 0.999 + . logic_name=eponine scaffold_523 . biological_region 9037 9043 0.999 - . logic_name=eponine scaffold_523 ensembl protein_coding_gene 5361 6128 . + . ID=Physo125963;biotype=protein_coding;external_name=estExt_Genewise1.C_5230002;logic_name=jgi_physo1_1 scaffold_523 ensembl transcript 5361 6128 . + . ID=Physo125963;Parent=Physo125963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_523 . CDS 5361 6128 . + 0 ID=Physo125963;Parent=Physo125963;rank=1 scaffold_523 . exon 5361 6128 . + . ID=Physo125963.1;Parent=Physo125963;constitutive=1;rank=1 scaffold_523 ensembl protein_coding_gene 3622 4053 . - . ID=Physo145136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5230001;logic_name=jgi_physo1_1 scaffold_523 ensembl transcript 3622 4053 . - . ID=Physo145136;Parent=Physo145136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_523 . CDS 3622 3813 . - 0 ID=Physo145136;Parent=Physo145136;rank=3 scaffold_523 . exon 3622 3813 . - . ID=Physo145136.3;Parent=Physo145136;constitutive=1;rank=3 scaffold_523 . CDS 3842 4000 . - 0 ID=Physo145136;Parent=Physo145136;rank=2 scaffold_523 . exon 3842 4000 . - . ID=Physo145136.2;Parent=Physo145136;constitutive=1;rank=2 scaffold_523 . CDS 4042 4053 . - 0 ID=Physo145136;Parent=Physo145136;rank=1 scaffold_523 . exon 4042 4053 . - . ID=Physo145136.1;Parent=Physo145136;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_522 1 9046 scaffold_522 . repeat_region 20 1857 . + . description=Polinton-1_PI scaffold_522 . repeat_region 1858 3850 . ? . description=dust scaffold_522 . repeat_region 3851 4471 . + . description=Polinton-1_PI scaffold_522 . repeat_region 4549 4556 . ? . description=dust scaffold_522 . repeat_region 4665 6007 . + . description=Polinton-1_PI scaffold_522 . repeat_region 6008 6912 . ? . description=dust scaffold_522 . repeat_region 7528 9046 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_521 1 9052 scaffold_521 . repeat_region 17 123 . - . description=Polinton-1_PI scaffold_521 . repeat_region 1712 1749 . ? . description=trf scaffold_521 . repeat_region 3076 8334 . ? . description=dust scaffold_521 . biological_region 8932 8933 0.999 + . logic_name=eponine scaffold_521 . biological_region 8978 8978 0.999 + . logic_name=eponine scaffold_521 ensembl protein_coding_gene 8333 9051 . + . ID=Physo125961;biotype=protein_coding;external_name=estExt_Genewise1.C_5210002;logic_name=jgi_physo1_1 scaffold_521 ensembl transcript 8333 9051 . + . ID=Physo125961;Parent=Physo125961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_521 . exon 8333 9051 . + . ID=Physo125961.1;Parent=Physo125961;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_521 . CDS 8348 8707 . + 0 ID=Physo125961;Parent=Physo125961;rank=1 scaffold_521 ensembl protein_coding_gene 113 471 . + . ID=Physo145133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5210001;logic_name=jgi_physo1_1 scaffold_521 ensembl transcript 113 471 . + . ID=Physo145133;Parent=Physo145133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_521 . exon 113 471 . + . ID=Physo145133.1;Parent=Physo145133;constitutive=1;ensembl_phase=-1;rank=1 scaffold_521 . CDS 241 471 . + 0 ID=Physo145133;Parent=Physo145133;rank=1 scaffold_521 ensembl protein_coding_gene 1272 2786 . + . ID=Physo145134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5210002;logic_name=jgi_physo1_1 scaffold_521 ensembl transcript 1272 2786 . + . ID=Physo145134;Parent=Physo145134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_521 . CDS 1272 2786 . + 0 ID=Physo145134;Parent=Physo145134;rank=1 scaffold_521 . exon 1272 2786 . + . ID=Physo145134.1;Parent=Physo145134;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_520 1 9057 scaffold_520 . repeat_region 1254 1312 . ? . description=trf scaffold_520 . repeat_region 1354 5509 . ? . description=dust scaffold_520 . repeat_region 8469 8478 . ? . description=dust scaffold_520 ensembl protein_coding_gene 8536 8931 . + . ID=Physo145132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5200001;logic_name=jgi_physo1_1 scaffold_520 ensembl transcript 8536 8931 . + . ID=Physo145132;Parent=Physo145132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_520 . CDS 8536 8931 . + 0 ID=Physo145132;Parent=Physo145132;rank=1 scaffold_520 . exon 8536 8931 . + . ID=Physo145132.1;Parent=Physo145132;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_501 1 9060 scaffold_501 . repeat_region 2270 2294 . ? . description=dust scaffold_501 . repeat_region 3180 3230 . ? . description=trf scaffold_501 . repeat_region 3304 4313 . ? . description=dust scaffold_501 . biological_region 5682 5684 0.999 + . logic_name=eponine scaffold_501 . biological_region 5701 5704 0.999 + . logic_name=eponine scaffold_501 . biological_region 5729 5730 0.999 - . logic_name=eponine scaffold_501 . repeat_region 6289 8669 . + . description=GypsyPi-1c_I-int scaffold_501 . biological_region 7808 7808 0.999 - . logic_name=eponine scaffold_501 . biological_region 8075 8076 0.999 + . logic_name=eponine scaffold_501 ensembl protein_coding_gene 5506 5802 . - . ID=Physo125935;biotype=protein_coding;external_name=estExt_Genewise1.C_5010002;logic_name=jgi_physo1_1 scaffold_501 ensembl transcript 5506 5802 . - . ID=Physo125935;Parent=Physo125935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_501 . CDS 5506 5802 . - 0 ID=Physo125935;Parent=Physo125935;rank=1 scaffold_501 . exon 5506 5802 . - . ID=Physo125935.1;Parent=Physo125935;constitutive=1;rank=1 scaffold_501 ensembl protein_coding_gene 5929 8999 . + . ID=Physo145120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5010001;logic_name=jgi_physo1_1 scaffold_501 ensembl transcript 5929 8999 . + . ID=Physo145120;Parent=Physo145120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_501 . CDS 5929 6008 . + 0 ID=Physo145120;Parent=Physo145120;rank=1 scaffold_501 . exon 5929 6008 . + . ID=Physo145120.1;Parent=Physo145120;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_501 . CDS 6211 8998 . + 0 ID=Physo145120;Parent=Physo145120;rank=2 scaffold_501 . exon 6211 8999 . + . ID=Physo145120.2;Parent=Physo145120;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_539 1 9062 scaffold_539 . repeat_region 605 627 . ? . description=trf scaffold_539 . biological_region 835 837 0.999 - . logic_name=eponine scaffold_539 . biological_region 1346 1350 0.999 - . logic_name=eponine scaffold_539 . biological_region 2410 2412 0.999 + . logic_name=eponine scaffold_539 . repeat_region 2755 7642 . ? . description=dust scaffold_539 ensembl protein_coding_gene 12 978 . - . ID=Physo145152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5390001;logic_name=jgi_physo1_1 scaffold_539 ensembl transcript 12 978 . - . ID=Physo145152;Parent=Physo145152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_539 . exon 12 686 . - . ID=Physo145152.2;Parent=Physo145152;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_539 . CDS 14 686 . - 0 ID=Physo145152;Parent=Physo145152;rank=2 scaffold_539 . CDS 725 978 . - 0 ID=Physo145152;Parent=Physo145152;rank=1 scaffold_539 . exon 725 978 . - . ID=Physo145152.1;Parent=Physo145152;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_539 ensembl protein_coding_gene 8056 8718 . + . ID=Physo145153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5390002;logic_name=jgi_physo1_1 scaffold_539 ensembl transcript 8056 8718 . + . ID=Physo145153;Parent=Physo145153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_539 . CDS 8056 8718 . + 0 ID=Physo145153;Parent=Physo145153;rank=1 scaffold_539 . exon 8056 8718 . + . ID=Physo145153.1;Parent=Physo145153;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_490 1 9109 scaffold_490 . repeat_region 3128 5066 . ? . description=dust scaffold_490 . biological_region 6660 6665 0.999 + . logic_name=eponine scaffold_490 . biological_region 6759 6761 0.999 - . logic_name=eponine scaffold_490 . repeat_region 7779 8966 . - . description=GypsyPi-1c_I-int scaffold_490 ensembl protein_coding_gene 590 1058 . - . ID=Physo125927;biotype=protein_coding;external_name=estExt_Genewise1.C_4900004;logic_name=jgi_physo1_1 scaffold_490 ensembl transcript 590 1058 . - . ID=Physo125927;Parent=Physo125927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_490 . CDS 590 811 . - 0 ID=Physo125927;Parent=Physo125927;rank=1 scaffold_490 . exon 590 1058 . - . ID=Physo125927.1;Parent=Physo125927;constitutive=1;ensembl_phase=-1;rank=1 scaffold_490 ensembl protein_coding_gene 7291 9079 . - . ID=Physo145112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4900001;logic_name=jgi_physo1_1 scaffold_490 ensembl transcript 7291 9079 . - . ID=Physo145112;Parent=Physo145112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_490 . CDS 7291 7356 . - 0 ID=Physo145112;Parent=Physo145112;rank=3 scaffold_490 . exon 7291 7356 . - . ID=Physo145112.3;Parent=Physo145112;constitutive=1;rank=3 scaffold_490 . CDS 7536 7785 . - 0 ID=Physo145112;Parent=Physo145112;rank=2 scaffold_490 . exon 7536 7785 . - . ID=Physo145112.2;Parent=Physo145112;constitutive=1;ensembl_phase=2;rank=2 scaffold_490 . CDS 7809 9079 . - 0 ID=Physo145112;Parent=Physo145112;rank=1 scaffold_490 . exon 7809 9079 . - . ID=Physo145112.1;Parent=Physo145112;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_516 1 9118 scaffold_516 . repeat_region 2752 6912 . ? . description=dust scaffold_516 . biological_region 6961 6966 0.999 + . logic_name=eponine scaffold_516 . biological_region 7280 7282 0.999 + . logic_name=eponine scaffold_516 . biological_region 7306 7308 0.999 - . logic_name=eponine scaffold_516 . repeat_region 7972 8217 . ? . description=trf scaffold_516 . repeat_region 7972 8217 . ? . description=trf scaffold_516 . repeat_region 7982 8248 . ? . description=trf scaffold_516 . biological_region 7983 7986 0.999 - . logic_name=eponine scaffold_516 . biological_region 8342 8347 0.999 - . logic_name=eponine scaffold_516 . biological_region 8427 8430 0.999 + . logic_name=eponine scaffold_516 . biological_region 8755 8758 0.999 - . logic_name=eponine scaffold_516 . repeat_region 8797 9117 . + . description=GypsyPi-1c_I-int scaffold_516 . biological_region 8921 8926 0.999 - . logic_name=eponine scaffold_516 . biological_region 8989 8991 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_518 1 9140 scaffold_518 . repeat_region 1433 1482 . ? . description=dust scaffold_518 . repeat_region 2315 5344 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_517 1 9167 scaffold_517 . biological_region 3772 3776 0.999 - . logic_name=eponine scaffold_517 . repeat_region 6084 6706 . ? . description=dust scaffold_517 . repeat_region 8266 8315 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_531 1 9169 scaffold_531 . repeat_region 236 273 . ? . description=trf scaffold_531 . repeat_region 240 284 . ? . description=trf scaffold_531 . repeat_region 835 4835 . ? . description=dust scaffold_531 . biological_region 5561 5562 0.999 + . logic_name=eponine scaffold_531 . biological_region 5785 5788 0.999 + . logic_name=eponine scaffold_531 . repeat_region 6654 7267 . ? . description=dust scaffold_531 . biological_region 8012 8018 0.999 - . logic_name=eponine scaffold_531 . repeat_region 8027 8036 . ? . description=dust scaffold_531 . biological_region 8115 8115 0.999 - . logic_name=eponine scaffold_531 . biological_region 8455 8456 0.999 + . logic_name=eponine scaffold_531 . biological_region 8679 8682 0.999 + . logic_name=eponine scaffold_531 ensembl protein_coding_gene 5279 7844 . - . ID=Physo145141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5310001;logic_name=jgi_physo1_1 scaffold_531 ensembl transcript 5279 7844 . - . ID=Physo145141;Parent=Physo145141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_531 . CDS 5279 6628 . - 0 ID=Physo145141;Parent=Physo145141;rank=2 scaffold_531 . exon 5279 6628 . - . ID=Physo145141.2;Parent=Physo145141;constitutive=1;rank=2 scaffold_531 . CDS 7275 7844 . - 0 ID=Physo145141;Parent=Physo145141;rank=1 scaffold_531 . exon 7275 7844 . - . ID=Physo145141.1;Parent=Physo145141;constitutive=1;rank=1 scaffold_531 ensembl protein_coding_gene 8173 9135 . - . ID=Physo145142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5310002;logic_name=jgi_physo1_1 scaffold_531 ensembl transcript 8173 9135 . - . ID=Physo145142;Parent=Physo145142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_531 . CDS 8173 9135 . - 0 ID=Physo145142;Parent=Physo145142;rank=1 scaffold_531 . exon 8173 9135 . - . ID=Physo145142.1;Parent=Physo145142;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_512 1 9175 scaffold_512 . biological_region 565 565 0.999 - . logic_name=eponine scaffold_512 . repeat_region 2036 2058 . ? . description=dust scaffold_512 . biological_region 2222 2229 0.999 - . logic_name=eponine scaffold_512 . biological_region 2261 2264 0.999 - . logic_name=eponine scaffold_512 . repeat_region 2564 2618 . ? . description=trf scaffold_512 . repeat_region 3331 8349 . ? . description=dust scaffold_512 ensembl protein_coding_gene 2881 3238 . - . ID=Physo125956;biotype=protein_coding;external_name=estExt_Genewise1.C_5120001;logic_name=jgi_physo1_1 scaffold_512 ensembl transcript 2881 3238 . - . ID=Physo125956;Parent=Physo125956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_512 . exon 2881 3238 . - . ID=Physo125956.1;Parent=Physo125956;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_512 . CDS 3047 3238 . - 0 ID=Physo125956;Parent=Physo125956;rank=1 ##gff-version 3 ##sequence-region scaffold_545 1 9197 scaffold_545 . repeat_region 1941 2878 . ? . description=dust scaffold_545 . repeat_region 3107 3116 . ? . description=dust scaffold_545 . repeat_region 4300 6410 . ? . description=dust scaffold_545 . repeat_region 8057 8106 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_519 1 9212 scaffold_519 . repeat_region 1073 1080 . ? . description=dust scaffold_519 . repeat_region 1761 2460 . ? . description=dust scaffold_519 . repeat_region 4064 6632 . ? . description=dust scaffold_519 . repeat_region 8185 8192 . ? . description=dust scaffold_519 ensembl protein_coding_gene 33 1049 . + . ID=Physo145131;biotype=protein_coding;description=Putative phospholipase D 2 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U1];external_name=estExt_fgenesh1_pg.C_5190001;logic_name=jgi_physo1_1 scaffold_519 ensembl transcript 33 1049 . + . ID=Physo145131;Parent=Physo145131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_519 . CDS 33 1049 . + 0 ID=Physo145131;Parent=Physo145131;rank=1 scaffold_519 . exon 33 1049 . + . ID=Physo145131.1;Parent=Physo145131;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_510 1 9233 scaffold_510 . biological_region 1019 1028 0.999 + . logic_name=eponine scaffold_510 . biological_region 1046 1049 0.999 + . logic_name=eponine scaffold_510 . biological_region 1072 1076 0.999 + . logic_name=eponine scaffold_510 . biological_region 1087 1092 0.999 - . logic_name=eponine scaffold_510 . biological_region 1123 1125 0.999 - . logic_name=eponine scaffold_510 . biological_region 1130 1132 0.999 + . logic_name=eponine scaffold_510 . biological_region 1150 1155 0.999 - . logic_name=eponine scaffold_510 . biological_region 1183 1189 0.999 - . logic_name=eponine scaffold_510 . repeat_region 1437 2947 . ? . description=dust scaffold_510 . repeat_region 4380 5607 . ? . description=dust scaffold_510 . repeat_region 7226 7990 . ? . description=dust scaffold_510 . biological_region 9184 9186 0.999 - . logic_name=eponine scaffold_510 ensembl protein_coding_gene 690 3578 . + . ID=Physo145127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5100001;logic_name=jgi_physo1_1 scaffold_510 ensembl transcript 690 3578 . + . ID=Physo145127;Parent=Physo145127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_510 . CDS 690 714 . + 0 ID=Physo145127;Parent=Physo145127;rank=1 scaffold_510 . exon 690 714 . + . ID=Physo145127.1;Parent=Physo145127;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_510 . CDS 788 1298 . + 0 ID=Physo145127;Parent=Physo145127;rank=2 scaffold_510 . exon 788 1298 . + . ID=Physo145127.2;Parent=Physo145127;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_510 . CDS 1365 1419 . + 0 ID=Physo145127;Parent=Physo145127;rank=3 scaffold_510 . exon 1365 1419 . + . ID=Physo145127.3;Parent=Physo145127;constitutive=1;ensembl_phase=2;rank=3 scaffold_510 . CDS 2990 3001 . + 0 ID=Physo145127;Parent=Physo145127;rank=4 scaffold_510 . exon 2990 3578 . + . ID=Physo145127.4;Parent=Physo145127;constitutive=1;ensembl_end_phase=-1;rank=4 ##gff-version 3 ##sequence-region scaffold_511 1 9236 scaffold_511 . biological_region 743 744 0.999 + . logic_name=eponine scaffold_511 . repeat_region 849 2435 . ? . description=dust scaffold_511 . biological_region 5691 5694 0.999 + . logic_name=eponine scaffold_511 . repeat_region 5717 5772 . ? . description=trf scaffold_511 . repeat_region 6494 6533 . ? . description=trf scaffold_511 . repeat_region 6694 6743 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_507 1 9254 scaffold_507 . repeat_region 3912 6482 . ? . description=dust scaffold_507 . repeat_region 7686 7694 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_529 1 9270 scaffold_529 . repeat_region 1461 1468 . ? . description=dust scaffold_529 . repeat_region 2181 3284 . ? . description=dust scaffold_529 . biological_region 3686 3687 0.999 - . logic_name=eponine scaffold_529 . biological_region 3725 3729 0.999 + . logic_name=eponine scaffold_529 . biological_region 4086 4088 0.999 + . logic_name=eponine scaffold_529 . biological_region 4146 4147 0.999 + . logic_name=eponine scaffold_529 . repeat_region 4740 8561 . ? . description=dust scaffold_529 ensembl tRNA_gene 8592 8661 . + . ID=EPrPSOG00000000063;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_529 ensembl transcript 8592 8661 . + . ID=EPrPSOT00000000063;Parent=EPrPSOG00000000063;biotype=tRNA;logic_name=ncrna_eg scaffold_529 . exon 8592 8661 . + . ID=EPrPSOE00000000063;Parent=EPrPSOT00000000063;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_506 1 9287 scaffold_506 . repeat_region 458 465 . ? . description=dust scaffold_506 . repeat_region 684 2731 . ? . description=dust scaffold_506 . repeat_region 3536 3544 . ? . description=dust scaffold_506 . repeat_region 5002 5426 . ? . description=dust scaffold_506 . repeat_region 7368 8519 . ? . description=dust scaffold_506 . repeat_region 8868 8907 . ? . description=trf scaffold_506 . repeat_region 8917 9000 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_503 1 9342 scaffold_503 . biological_region 874 879 0.999 - . logic_name=eponine scaffold_503 . biological_region 6180 6181 0.999 + . logic_name=eponine scaffold_503 ensembl protein_coding_gene 161 977 . - . ID=Physo145121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5030001;logic_name=jgi_physo1_1 scaffold_503 ensembl transcript 161 977 . - . ID=Physo145121;Parent=Physo145121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_503 . exon 161 977 . - . ID=Physo145121.1;Parent=Physo145121;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_503 . CDS 162 977 . - 0 ID=Physo145121;Parent=Physo145121;rank=1 scaffold_503 ensembl protein_coding_gene 1510 3120 . + . ID=Physo145122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5030002;logic_name=jgi_physo1_1 scaffold_503 ensembl transcript 1510 3120 . + . ID=Physo145122;Parent=Physo145122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_503 . CDS 1510 3120 . + 0 ID=Physo145122;Parent=Physo145122;rank=1 scaffold_503 . exon 1510 3120 . + . ID=Physo145122.1;Parent=Physo145122;constitutive=1;rank=1 scaffold_503 ensembl protein_coding_gene 3273 4484 . - . ID=Physo145123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5030003;logic_name=jgi_physo1_1 scaffold_503 ensembl transcript 3273 4484 . - . ID=Physo145123;Parent=Physo145123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_503 . CDS 3273 4118 . - 0 ID=Physo145123;Parent=Physo145123;rank=2 scaffold_503 . exon 3273 4118 . - . ID=Physo145123.2;Parent=Physo145123;constitutive=1;rank=2 scaffold_503 . CDS 4167 4484 . - 0 ID=Physo145123;Parent=Physo145123;rank=1 scaffold_503 . exon 4167 4484 . - . ID=Physo145123.1;Parent=Physo145123;constitutive=1;rank=1 scaffold_503 ensembl protein_coding_gene 5100 6296 . - . ID=Physo145124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5030004;logic_name=jgi_physo1_1 scaffold_503 ensembl transcript 5100 6296 . - . ID=Physo145124;Parent=Physo145124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_503 . CDS 5100 6176 . - 0 ID=Physo145124;Parent=Physo145124;rank=2 scaffold_503 . exon 5100 6176 . - . ID=Physo145124.2;Parent=Physo145124;constitutive=1;rank=2 scaffold_503 . CDS 6237 6296 . - 0 ID=Physo145124;Parent=Physo145124;rank=1 scaffold_503 . exon 6237 6296 . - . ID=Physo145124.1;Parent=Physo145124;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_505 1 9345 scaffold_505 . repeat_region 36 1780 . - . description=GypsyPi-1c_I-int scaffold_505 . biological_region 2120 2120 0.999 - . logic_name=eponine scaffold_505 . biological_region 2305 2307 0.999 + . logic_name=eponine scaffold_505 . biological_region 2372 2373 0.999 - . logic_name=eponine scaffold_505 . biological_region 2440 2443 0.999 - . logic_name=eponine scaffold_505 . repeat_region 3349 7307 . ? . description=dust scaffold_505 . biological_region 7401 7402 0.999 - . logic_name=eponine scaffold_505 . biological_region 7459 7459 0.999 + . logic_name=eponine scaffold_505 . repeat_region 7669 7677 . ? . description=dust scaffold_505 ensembl protein_coding_gene 59 2144 . - . ID=Physo145126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5050001;logic_name=jgi_physo1_1 scaffold_505 ensembl transcript 59 2144 . - . ID=Physo145126;Parent=Physo145126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_505 . CDS 59 967 . - 0 ID=Physo145126;Parent=Physo145126;rank=4 scaffold_505 . exon 59 967 . - . ID=Physo145126.4;Parent=Physo145126;constitutive=1;rank=4 scaffold_505 . CDS 1172 1430 . - 0 ID=Physo145126;Parent=Physo145126;rank=3 scaffold_505 . exon 1172 1430 . - . ID=Physo145126.3;Parent=Physo145126;constitutive=1;ensembl_phase=2;rank=3 scaffold_505 . CDS 1655 2009 . - 0 ID=Physo145126;Parent=Physo145126;rank=2 scaffold_505 . exon 1655 2009 . - . ID=Physo145126.2;Parent=Physo145126;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_505 . CDS 2072 2144 . - 0 ID=Physo145126;Parent=Physo145126;rank=1 scaffold_505 . exon 2072 2144 . - . ID=Physo145126.1;Parent=Physo145126;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_504 1 9382 scaffold_504 . biological_region 995 995 0.999 + . logic_name=eponine scaffold_504 . repeat_region 1690 1700 . ? . description=dust scaffold_504 . repeat_region 1800 1807 . ? . description=dust scaffold_504 . biological_region 2076 2076 0.999 + . logic_name=eponine scaffold_504 . repeat_region 3029 7442 . ? . description=dust scaffold_504 . repeat_region 8538 8587 . ? . description=dust scaffold_504 . biological_region 9019 9023 0.999 + . logic_name=eponine scaffold_504 . biological_region 9050 9052 0.999 - . logic_name=eponine scaffold_504 . repeat_region 9345 9369 . ? . description=trf scaffold_504 ensembl protein_coding_gene 7868 9300 . - . ID=Physo145125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5040001;logic_name=jgi_physo1_1 scaffold_504 ensembl transcript 7868 9300 . - . ID=Physo145125;Parent=Physo145125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_504 . CDS 7868 7882 . - 0 ID=Physo145125;Parent=Physo145125;rank=4 scaffold_504 . exon 7868 7882 . - . ID=Physo145125.4;Parent=Physo145125;constitutive=1;rank=4 scaffold_504 . CDS 7909 8171 . - 0 ID=Physo145125;Parent=Physo145125;rank=3 scaffold_504 . exon 7909 8171 . - . ID=Physo145125.3;Parent=Physo145125;constitutive=1;ensembl_phase=1;rank=3 scaffold_504 . CDS 8242 8465 . - 0 ID=Physo145125;Parent=Physo145125;rank=2 scaffold_504 . exon 8242 8465 . - . ID=Physo145125.2;Parent=Physo145125;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_504 . CDS 8639 9300 . - 0 ID=Physo145125;Parent=Physo145125;rank=1 scaffold_504 . exon 8639 9300 . - . ID=Physo145125.1;Parent=Physo145125;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_500 1 9387 scaffold_500 . repeat_region 668 675 . ? . description=dust scaffold_500 . biological_region 1029 1031 0.999 - . logic_name=eponine scaffold_500 . repeat_region 1757 1796 . ? . description=trf scaffold_500 . repeat_region 2771 2886 . ? . description=dust scaffold_500 . repeat_region 4285 4342 . ? . description=trf scaffold_500 . repeat_region 4292 4350 . ? . description=trf scaffold_500 . repeat_region 4420 6413 . ? . description=dust scaffold_500 . repeat_region 7308 7406 . ? . description=trf scaffold_500 . repeat_region 7381 7449 . ? . description=trf scaffold_500 . repeat_region 7389 7439 . ? . description=trf scaffold_500 . repeat_region 7389 7442 . ? . description=dust scaffold_500 . repeat_region 7389 7442 . ? . description=trf scaffold_500 . repeat_region 7996 8005 . ? . description=dust scaffold_500 . repeat_region 8045 8064 . ? . description=trf scaffold_500 ensembl protein_coding_gene 6447 7538 . + . ID=Physo145119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5000001;logic_name=jgi_physo1_1 scaffold_500 ensembl transcript 6447 7538 . + . ID=Physo145119;Parent=Physo145119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_500 . CDS 6447 7538 . + 0 ID=Physo145119;Parent=Physo145119;rank=1 scaffold_500 . exon 6447 7538 . + . ID=Physo145119.1;Parent=Physo145119;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_509 1 9415 scaffold_509 . repeat_region 3075 3517 . ? . description=dust scaffold_509 . biological_region 5944 5947 0.999 + . logic_name=eponine scaffold_509 . biological_region 5972 5973 0.999 - . logic_name=eponine scaffold_509 . biological_region 6009 6013 0.999 - . logic_name=eponine scaffold_509 . repeat_region 6420 8018 . ? . description=dust scaffold_509 . repeat_region 8019 9358 . + . description=GypsyPi-1c_I-int scaffold_509 . repeat_region 8897 8941 . ? . description=trf scaffold_509 ensembl protein_coding_gene 5267 5557 . + . ID=Physo125946;biotype=protein_coding;external_name=estExt_Genewise1.C_5090001;logic_name=jgi_physo1_1 scaffold_509 ensembl transcript 5267 5557 . + . ID=Physo125946;Parent=Physo125946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_509 . exon 5267 5557 . + . ID=Physo125946.1;Parent=Physo125946;constitutive=1;ensembl_phase=-1;rank=1 scaffold_509 . CDS 5360 5557 . + 0 ID=Physo125946;Parent=Physo125946;rank=1 scaffold_509 ensembl protein_coding_gene 8025 9336 . + . ID=Physo125950;biotype=protein_coding;external_name=estExt_Genewise1.C_5090005;logic_name=jgi_physo1_1 scaffold_509 ensembl transcript 8025 9336 . + . ID=Physo125950;Parent=Physo125950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_509 . exon 8025 8884 . + . ID=Physo125950.1;Parent=Physo125950;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_509 . CDS 8100 8884 . + 0 ID=Physo125950;Parent=Physo125950;rank=1 scaffold_509 . CDS 8922 9336 . + 0 ID=Physo125950;Parent=Physo125950;rank=2 scaffold_509 . exon 8922 9336 . + . ID=Physo125950.2;Parent=Physo125950;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_498 1 9430 scaffold_498 . biological_region 414 418 0.999 - . logic_name=eponine scaffold_498 . repeat_region 492 509 . ? . description=dust scaffold_498 . repeat_region 831 856 . ? . description=trf scaffold_498 . repeat_region 835 856 . ? . description=dust scaffold_498 . biological_region 1793 1796 0.999 + . logic_name=eponine scaffold_498 . biological_region 2110 2112 0.999 + . logic_name=eponine scaffold_498 . repeat_region 3112 3159 . ? . description=trf scaffold_498 . repeat_region 3178 7206 . ? . description=dust scaffold_498 . biological_region 7274 7278 0.999 + . logic_name=eponine scaffold_498 . repeat_region 9247 9254 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_496 1 9457 scaffold_496 . repeat_region 1816 6069 . ? . description=dust scaffold_496 . repeat_region 6224 6248 . ? . description=trf scaffold_496 . biological_region 6319 6323 0.999 - . logic_name=eponine scaffold_496 ensembl pseudogene 877 1528 . - . ID=Physo145117;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_4960001;logic_name=jgi_physo1_1 scaffold_496 ensembl pseudogene 877 1528 . - . ID=Physo145117;Parent=Physo145117;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_496 . exon 877 936 . - . ID=Physo145117.2;Parent=Physo145117;constitutive=1;rank=2 scaffold_496 . exon 995 1528 . - . ID=Physo145117.1;Parent=Physo145117;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_495 1 9459 scaffold_495 . repeat_region 2136 7048 . ? . description=dust scaffold_495 . repeat_region 7336 7385 . ? . description=trf scaffold_495 . repeat_region 7989 7996 . ? . description=dust scaffold_495 . biological_region 8530 8534 0.999 + . logic_name=eponine scaffold_495 . repeat_region 9343 9350 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_502 1 9498 scaffold_502 . repeat_region 1875 1882 . ? . description=dust scaffold_502 . repeat_region 1994 2053 . ? . description=trf scaffold_502 . repeat_region 2578 2634 . ? . description=trf scaffold_502 . repeat_region 2584 2635 . ? . description=trf scaffold_502 . biological_region 2934 2935 0.999 + . logic_name=eponine scaffold_502 . repeat_region 4039 4220 . ? . description=dust scaffold_502 . repeat_region 5451 5676 . ? . description=trf scaffold_502 . biological_region 5571 5576 0.999 + . logic_name=eponine scaffold_502 . biological_region 5575 5578 0.999 - . logic_name=eponine scaffold_502 . biological_region 5596 5598 0.999 - . logic_name=eponine scaffold_502 . biological_region 5615 5618 0.999 - . logic_name=eponine scaffold_502 . biological_region 5653 5657 0.999 + . logic_name=eponine scaffold_502 . repeat_region 6338 6382 . ? . description=trf scaffold_502 . repeat_region 6345 6496 . ? . description=trf scaffold_502 . repeat_region 6404 6445 . ? . description=trf scaffold_502 . repeat_region 6445 6570 . ? . description=trf scaffold_502 . repeat_region 6454 6570 . ? . description=trf scaffold_502 ensembl protein_coding_gene 3437 3824 . - . ID=Physo125937;biotype=protein_coding;external_name=estExt_Genewise1.C_5020001;logic_name=jgi_physo1_1 scaffold_502 ensembl transcript 3437 3824 . - . ID=Physo125937;Parent=Physo125937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_502 . CDS 3437 3793 . - 0 ID=Physo125937;Parent=Physo125937;rank=1 scaffold_502 . exon 3437 3824 . - . ID=Physo125937.1;Parent=Physo125937;constitutive=1;ensembl_phase=-1;rank=1 scaffold_502 ensembl protein_coding_gene 37 219 . - . ID=Physo125942;biotype=protein_coding;external_name=estExt_Genewise1.C_5020006;logic_name=jgi_physo1_1 scaffold_502 ensembl transcript 37 219 . - . ID=Physo125942;Parent=Physo125942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_502 . CDS 37 219 . - 0 ID=Physo125942;Parent=Physo125942;rank=1 scaffold_502 . exon 37 219 . - . ID=Physo125942.1;Parent=Physo125942;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_493 1 9501 scaffold_493 . biological_region 111 115 0.999 + . logic_name=eponine scaffold_493 . repeat_region 3766 3838 . ? . description=trf scaffold_493 . repeat_region 4120 4138 . ? . description=dust scaffold_493 . repeat_region 4393 4413 . ? . description=trf scaffold_493 . repeat_region 4393 4413 . ? . description=dust scaffold_493 . repeat_region 4848 8794 . ? . description=dust scaffold_493 ensembl protein_coding_gene 2727 2957 . - . ID=Physo125931;biotype=protein_coding;external_name=estExt_Genewise1.C_4930001;logic_name=jgi_physo1_1 scaffold_493 ensembl transcript 2727 2957 . - . ID=Physo125931;Parent=Physo125931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_493 . CDS 2727 2879 . - 0 ID=Physo125931;Parent=Physo125931;rank=1 scaffold_493 . exon 2727 2957 . - . ID=Physo125931.1;Parent=Physo125931;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_492 1 9504 scaffold_492 . biological_region 76 77 0.999 - . logic_name=eponine scaffold_492 . biological_region 801 806 0.999 - . logic_name=eponine scaffold_492 . biological_region 815 815 0.999 + . logic_name=eponine scaffold_492 . biological_region 858 860 0.999 + . logic_name=eponine scaffold_492 . biological_region 877 881 0.999 + . logic_name=eponine scaffold_492 . biological_region 895 901 0.999 - . logic_name=eponine scaffold_492 . biological_region 896 898 0.999 + . logic_name=eponine scaffold_492 . biological_region 912 914 0.999 - . logic_name=eponine scaffold_492 . biological_region 920 924 0.999 - . logic_name=eponine scaffold_492 . biological_region 921 925 0.999 + . logic_name=eponine scaffold_492 . biological_region 948 955 0.999 + . logic_name=eponine scaffold_492 . biological_region 953 956 0.999 - . logic_name=eponine scaffold_492 . biological_region 966 972 0.999 - . logic_name=eponine scaffold_492 . biological_region 1025 1025 0.999 + . logic_name=eponine scaffold_492 . repeat_region 1054 1118 . ? . description=trf scaffold_492 . biological_region 1094 1097 0.999 + . logic_name=eponine scaffold_492 . biological_region 1115 1120 0.999 - . logic_name=eponine scaffold_492 . repeat_region 1378 2285 . ? . description=dust scaffold_492 . repeat_region 4137 8781 . ? . description=dust scaffold_492 ensembl protein_coding_gene 1 1328 . + . ID=Physo145113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4920001;logic_name=jgi_physo1_1 scaffold_492 ensembl transcript 1 1328 . + . ID=Physo145113;Parent=Physo145113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_492 . exon 1 590 . + . ID=Physo145113.1;Parent=Physo145113;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_492 . CDS 103 590 . + 0 ID=Physo145113;Parent=Physo145113;rank=1 scaffold_492 . CDS 665 698 . + 0 ID=Physo145113;Parent=Physo145113;rank=2 scaffold_492 . exon 665 698 . + . ID=Physo145113.2;Parent=Physo145113;constitutive=1;ensembl_phase=2;rank=2 scaffold_492 . CDS 790 1240 . + 0 ID=Physo145113;Parent=Physo145113;rank=3 scaffold_492 . exon 790 1240 . + . ID=Physo145113.3;Parent=Physo145113;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_492 . CDS 1321 1328 . + 0 ID=Physo145113;Parent=Physo145113;rank=4 scaffold_492 . exon 1321 1328 . + . ID=Physo145113.4;Parent=Physo145113;constitutive=1;ensembl_phase=1;rank=4 scaffold_492 ensembl protein_coding_gene 2479 4029 . + . ID=Physo145114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4920002;logic_name=jgi_physo1_1 scaffold_492 ensembl transcript 2479 4029 . + . ID=Physo145114;Parent=Physo145114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_492 . CDS 2479 4029 . + 0 ID=Physo145114;Parent=Physo145114;rank=1 scaffold_492 . exon 2479 4029 . + . ID=Physo145114.1;Parent=Physo145114;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_514 1 9521 scaffold_514 . repeat_region 1437 1462 . ? . description=dust scaffold_514 . biological_region 3053 3055 0.999 - . logic_name=eponine scaffold_514 . biological_region 3129 3133 0.999 - . logic_name=eponine scaffold_514 . biological_region 3143 3150 0.999 + . logic_name=eponine scaffold_514 . biological_region 3177 3179 0.999 - . logic_name=eponine scaffold_514 . biological_region 3202 3204 0.999 - . logic_name=eponine scaffold_514 . repeat_region 3292 3311 . ? . description=trf scaffold_514 . biological_region 4325 4329 0.999 + . logic_name=eponine scaffold_514 . repeat_region 4756 4783 . ? . description=dust scaffold_514 . repeat_region 4756 4783 . ? . description=trf scaffold_514 . repeat_region 4795 6595 . ? . description=dust scaffold_514 . repeat_region 8480 8487 . ? . description=dust scaffold_514 ensembl protein_coding_gene 2732 3799 . + . ID=Physo109706;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_5140001;logic_name=jgi_physo1_1 scaffold_514 ensembl transcript 2732 3799 . + . ID=Physo109706;Parent=Physo109706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_514 . CDS 2732 3799 . + 0 ID=Physo109706;Parent=Physo109706;rank=1 scaffold_514 . exon 2732 3799 . + . ID=Physo109706.1;Parent=Physo109706;constitutive=1;rank=1 scaffold_514 ensembl protein_coding_gene 7465 7848 . + . ID=Physo145129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5140002;logic_name=jgi_physo1_1 scaffold_514 ensembl transcript 7465 7848 . + . ID=Physo145129;Parent=Physo145129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_514 . CDS 7465 7848 . + 0 ID=Physo145129;Parent=Physo145129;rank=1 scaffold_514 . exon 7465 7848 . + . ID=Physo145129.1;Parent=Physo145129;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_489 1 9576 scaffold_489 . repeat_region 3732 3865 . ? . description=dust scaffold_489 . repeat_region 4838 6299 . ? . description=dust scaffold_489 . repeat_region 6511 6536 . ? . description=trf scaffold_489 . repeat_region 7810 7861 . ? . description=dust scaffold_489 . repeat_region 7810 7861 . ? . description=trf scaffold_489 . biological_region 7869 7869 0.999 - . logic_name=eponine scaffold_489 ensembl protein_coding_gene 346 2657 . - . ID=Physo145111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4890001;logic_name=jgi_physo1_1 scaffold_489 ensembl transcript 346 2657 . - . ID=Physo145111;Parent=Physo145111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_489 . CDS 346 528 . - 0 ID=Physo145111;Parent=Physo145111;rank=3 scaffold_489 . exon 346 528 . - . ID=Physo145111.3;Parent=Physo145111;constitutive=1;rank=3 scaffold_489 . CDS 603 1802 . - 0 ID=Physo145111;Parent=Physo145111;rank=2 scaffold_489 . exon 603 1802 . - . ID=Physo145111.2;Parent=Physo145111;constitutive=1;rank=2 scaffold_489 . CDS 1902 2657 . - 0 ID=Physo145111;Parent=Physo145111;rank=1 scaffold_489 . exon 1902 2657 . - . ID=Physo145111.1;Parent=Physo145111;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_497 1 9580 scaffold_497 . repeat_region 635 642 . ? . description=dust scaffold_497 . repeat_region 986 5429 . ? . description=dust scaffold_497 . biological_region 6300 6301 0.999 + . logic_name=eponine scaffold_497 . repeat_region 6666 6695 . ? . description=trf scaffold_497 ensembl protein_coding_gene 6025 7467 . - . ID=Physo145118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4970001;logic_name=jgi_physo1_1 scaffold_497 ensembl transcript 6025 7467 . - . ID=Physo145118;Parent=Physo145118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_497 . exon 6025 6340 . - . ID=Physo145118.4;Parent=Physo145118;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_497 . CDS 6122 6340 . - 0 ID=Physo145118;Parent=Physo145118;rank=4 scaffold_497 . CDS 6385 6912 . - 0 ID=Physo145118;Parent=Physo145118;rank=3 scaffold_497 . exon 6385 6912 . - . ID=Physo145118.3;Parent=Physo145118;constitutive=1;rank=3 scaffold_497 . CDS 6985 7138 . - 0 ID=Physo145118;Parent=Physo145118;rank=2 scaffold_497 . exon 6985 7138 . - . ID=Physo145118.2;Parent=Physo145118;constitutive=1;ensembl_phase=2;rank=2 scaffold_497 . CDS 7415 7467 . - 0 ID=Physo145118;Parent=Physo145118;rank=1 scaffold_497 . exon 7415 7467 . - . ID=Physo145118.1;Parent=Physo145118;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_486 1 9587 scaffold_486 . biological_region 496 499 0.999 - . logic_name=eponine scaffold_486 . repeat_region 2678 8566 . ? . description=dust scaffold_486 . biological_region 9211 9214 0.999 - . logic_name=eponine scaffold_486 . biological_region 9243 9244 0.999 - . logic_name=eponine scaffold_486 . biological_region 9265 9270 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_487 1 9588 scaffold_487 . biological_region 442 446 0.999 + . logic_name=eponine scaffold_487 . repeat_region 3536 7272 . ? . description=dust scaffold_487 . repeat_region 7855 7862 . ? . description=dust scaffold_487 ensembl protein_coding_gene 586 3192 . + . ID=Physo145109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4870001;logic_name=jgi_physo1_1 scaffold_487 ensembl transcript 586 3192 . + . ID=Physo145109;Parent=Physo145109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_487 . CDS 586 3192 . + 0 ID=Physo145109;Parent=Physo145109;rank=1 scaffold_487 . exon 586 3192 . + . ID=Physo145109.1;Parent=Physo145109;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_515 1 9627 scaffold_515 . repeat_region 773 859 . + . description=GypsyPi-1c_I-int scaffold_515 . repeat_region 1427 1924 . ? . description=dust scaffold_515 . repeat_region 2485 2786 . + . description=GypsyPi-1c_LTR scaffold_515 . repeat_region 3850 6758 . ? . description=dust scaffold_515 ensembl protein_coding_gene 7745 8692 . + . ID=Physo145130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_5150001;logic_name=jgi_physo1_1 scaffold_515 ensembl transcript 7745 8692 . + . ID=Physo145130;Parent=Physo145130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_515 . CDS 7745 8692 . + 0 ID=Physo145130;Parent=Physo145130;rank=1 scaffold_515 . exon 7745 8692 . + . ID=Physo145130.1;Parent=Physo145130;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_481 1 9642 scaffold_481 . biological_region 259 264 0.999 + . logic_name=eponine scaffold_481 . biological_region 420 427 0.999 - . logic_name=eponine scaffold_481 . biological_region 1337 1338 0.999 + . logic_name=eponine scaffold_481 . biological_region 4060 4064 0.999 + . logic_name=eponine scaffold_481 . biological_region 4140 4144 0.999 + . logic_name=eponine scaffold_481 . biological_region 4143 4146 0.999 - . logic_name=eponine scaffold_481 . biological_region 4464 4466 0.999 - . logic_name=eponine scaffold_481 . biological_region 4625 4626 0.999 + . logic_name=eponine scaffold_481 . biological_region 5516 5518 0.999 - . logic_name=eponine scaffold_481 . repeat_region 5713 8774 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_528 1 9654 scaffold_528 . repeat_region 1 319 . ? . description=dust scaffold_528 . repeat_region 1 321 . ? . description=trf scaffold_528 . repeat_region 800 2593 . ? . description=dust scaffold_528 . repeat_region 3107 3130 . ? . description=dust scaffold_528 . repeat_region 3107 3130 . ? . description=trf scaffold_528 . biological_region 3548 3549 0.999 - . logic_name=eponine scaffold_528 . biological_region 3605 3605 0.999 + . logic_name=eponine scaffold_528 . biological_region 3769 3774 0.999 + . logic_name=eponine scaffold_528 . biological_region 3823 3824 0.999 + . logic_name=eponine scaffold_528 . biological_region 3903 3906 0.999 - . logic_name=eponine scaffold_528 . biological_region 4469 4472 0.999 + . logic_name=eponine scaffold_528 . biological_region 4487 4489 0.999 - . logic_name=eponine scaffold_528 . repeat_region 4493 4519 . ? . description=trf scaffold_528 . repeat_region 5635 7222 . ? . description=dust scaffold_528 . biological_region 7354 7358 0.999 - . logic_name=eponine scaffold_528 . repeat_region 7517 7633 . ? . description=trf scaffold_528 . biological_region 7607 7607 0.999 + . logic_name=eponine scaffold_528 . repeat_region 8065 8098 . ? . description=trf scaffold_528 . biological_region 8149 8154 0.999 + . logic_name=eponine scaffold_528 . biological_region 8197 8200 0.999 - . logic_name=eponine scaffold_528 . biological_region 8273 8275 0.999 + . logic_name=eponine scaffold_528 . repeat_region 8911 8919 . ? . description=dust scaffold_528 . repeat_region 9129 9139 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_483 1 9657 scaffold_483 . repeat_region 773 792 . ? . description=trf scaffold_483 . repeat_region 3068 6159 . ? . description=dust scaffold_483 . repeat_region 7565 7572 . ? . description=dust scaffold_483 . repeat_region 8586 8635 . ? . description=dust scaffold_483 . repeat_region 9299 9306 . ? . description=dust scaffold_483 ensembl protein_coding_gene 1975 2454 . + . ID=Physo125906;biotype=protein_coding;external_name=estExt_Genewise1.C_4830001;logic_name=jgi_physo1_1 scaffold_483 ensembl transcript 1975 2454 . + . ID=Physo125906;Parent=Physo125906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_483 . exon 1975 2454 . + . ID=Physo125906.1;Parent=Physo125906;constitutive=1;ensembl_phase=-1;rank=1 scaffold_483 . CDS 2050 2454 . + 0 ID=Physo125906;Parent=Physo125906;rank=1 scaffold_483 ensembl protein_coding_gene 6181 6675 . + . ID=Physo125909;biotype=protein_coding;external_name=estExt_Genewise1.C_4830004;logic_name=jgi_physo1_1 scaffold_483 ensembl transcript 6181 6675 . + . ID=Physo125909;Parent=Physo125909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_483 . exon 6181 6675 . + . ID=Physo125909.1;Parent=Physo125909;constitutive=1;ensembl_phase=-1;rank=1 scaffold_483 . CDS 6385 6675 . + 0 ID=Physo125909;Parent=Physo125909;rank=1 scaffold_483 ensembl protein_coding_gene 815 928 . + . ID=Physo125910;biotype=protein_coding;external_name=estExt_Genewise1.C_4830005;logic_name=jgi_physo1_1 scaffold_483 ensembl transcript 815 928 . + . ID=Physo125910;Parent=Physo125910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_483 . exon 815 928 . + . ID=Physo125910.1;Parent=Physo125910;constitutive=1;ensembl_phase=-1;rank=1 scaffold_483 . CDS 821 928 . + 0 ID=Physo125910;Parent=Physo125910;rank=1 ##gff-version 3 ##sequence-region scaffold_499 1 9671 scaffold_499 . repeat_region 1022 1041 . ? . description=trf scaffold_499 . repeat_region 1535 2362 . ? . description=dust scaffold_499 . repeat_region 3478 3576 . ? . description=dust scaffold_499 . repeat_region 4327 8775 . ? . description=dust scaffold_499 . repeat_region 8864 8906 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_473 1 9682 scaffold_473 . repeat_region 1533 1717 . - . description=Polinton-1_PI scaffold_473 . repeat_region 1733 1799 . - . description=Polinton-1_PI scaffold_473 . repeat_region 3332 5973 . ? . description=dust scaffold_473 . repeat_region 5996 6067 . + . description=Polinton-1_PI scaffold_473 . repeat_region 6024 6031 . ? . description=dust scaffold_473 . repeat_region 6050 7933 . + . description=Polinton-1_PI scaffold_473 . repeat_region 7934 8199 . ? . description=dust scaffold_473 . repeat_region 8202 8945 . + . description=Polinton-1_PI scaffold_473 . repeat_region 9137 9682 . + . description=Polinton-1_PI scaffold_473 ensembl protein_coding_gene 6322 7879 . + . ID=Physo145091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4730001;logic_name=jgi_physo1_1 scaffold_473 ensembl transcript 6322 7879 . + . ID=Physo145091;Parent=Physo145091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_473 . CDS 6322 6348 . + 0 ID=Physo145091;Parent=Physo145091;rank=1 scaffold_473 . exon 6322 6348 . + . ID=Physo145091.1;Parent=Physo145091;constitutive=1;rank=1 scaffold_473 . CDS 6375 6467 . + 0 ID=Physo145091;Parent=Physo145091;rank=2 scaffold_473 . exon 6375 6467 . + . ID=Physo145091.2;Parent=Physo145091;constitutive=1;rank=2 scaffold_473 . CDS 6489 7828 . + 0 ID=Physo145091;Parent=Physo145091;rank=3 scaffold_473 . exon 6489 7828 . + . ID=Physo145091.3;Parent=Physo145091;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_473 . CDS 7864 7879 . + 0 ID=Physo145091;Parent=Physo145091;rank=4 scaffold_473 . exon 7864 7879 . + . ID=Physo145091.4;Parent=Physo145091;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_488 1 9695 scaffold_488 . repeat_region 1428 1471 . ? . description=trf scaffold_488 . repeat_region 3669 3718 . ? . description=dust scaffold_488 . repeat_region 4561 4610 . ? . description=dust scaffold_488 . repeat_region 5015 5024 . ? . description=dust scaffold_488 . repeat_region 5089 5096 . ? . description=dust scaffold_488 . repeat_region 5822 8904 . ? . description=dust scaffold_488 ensembl protein_coding_gene 740 4994 . + . ID=Physo145110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4880001;logic_name=jgi_physo1_1 scaffold_488 ensembl transcript 740 4994 . + . ID=Physo145110;Parent=Physo145110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_488 . CDS 740 830 . + 0 ID=Physo145110;Parent=Physo145110;rank=1 scaffold_488 . exon 740 830 . + . ID=Physo145110.1;Parent=Physo145110;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_488 . CDS 897 971 . + 0 ID=Physo145110;Parent=Physo145110;rank=2 scaffold_488 . exon 897 971 . + . ID=Physo145110.2;Parent=Physo145110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_488 . CDS 1038 1088 . + 0 ID=Physo145110;Parent=Physo145110;rank=3 scaffold_488 . exon 1038 1088 . + . ID=Physo145110.3;Parent=Physo145110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_488 . CDS 1194 1394 . + 0 ID=Physo145110;Parent=Physo145110;rank=4 scaffold_488 . exon 1194 1394 . + . ID=Physo145110.4;Parent=Physo145110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_488 . CDS 1479 1685 . + 0 ID=Physo145110;Parent=Physo145110;rank=5 scaffold_488 . exon 1479 1685 . + . ID=Physo145110.5;Parent=Physo145110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_488 . CDS 1770 2813 . + 0 ID=Physo145110;Parent=Physo145110;rank=6 scaffold_488 . exon 1770 2813 . + . ID=Physo145110.6;Parent=Physo145110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_488 . CDS 2992 3495 . + 0 ID=Physo145110;Parent=Physo145110;rank=7 scaffold_488 . exon 2992 3495 . + . ID=Physo145110.7;Parent=Physo145110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_488 . CDS 3764 4116 . + 0 ID=Physo145110;Parent=Physo145110;rank=8 scaffold_488 . exon 3764 4116 . + . ID=Physo145110.8;Parent=Physo145110;constitutive=1;ensembl_phase=1;rank=8 scaffold_488 . CDS 4659 4994 . + 0 ID=Physo145110;Parent=Physo145110;rank=9 scaffold_488 . exon 4659 4994 . + . ID=Physo145110.9;Parent=Physo145110;constitutive=1;rank=9 ##gff-version 3 ##sequence-region scaffold_484 1 9705 scaffold_484 . repeat_region 641 716 . ? . description=trf scaffold_484 . repeat_region 1431 1480 . ? . description=dust scaffold_484 . repeat_region 1963 2003 . ? . description=trf scaffold_484 . repeat_region 3181 7077 . ? . description=dust scaffold_484 . repeat_region 7435 7470 . ? . description=trf scaffold_484 . repeat_region 8154 9524 . + . description=GypsyPi-1c_I-int scaffold_484 . biological_region 9464 9475 0.999 - . logic_name=eponine scaffold_484 ensembl protein_coding_gene 656 1132 . - . ID=Physo109704;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4840001;logic_name=jgi_physo1_1 scaffold_484 ensembl transcript 656 1132 . - . ID=Physo109704;Parent=Physo109704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_484 . CDS 656 1132 . - 0 ID=Physo109704;Parent=Physo109704;rank=1 scaffold_484 . exon 656 1132 . - . ID=Physo109704.1;Parent=Physo109704;constitutive=1;rank=1 scaffold_484 ensembl protein_coding_gene 9054 9521 . + . ID=Physo109705;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4840002;logic_name=jgi_physo1_1 scaffold_484 ensembl transcript 9054 9521 . + . ID=Physo109705;Parent=Physo109705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_484 . CDS 9054 9521 . + 0 ID=Physo109705;Parent=Physo109705;rank=1 scaffold_484 . exon 9054 9521 . + . ID=Physo109705.1;Parent=Physo109705;constitutive=1;rank=1 scaffold_484 ensembl protein_coding_gene 8361 8945 . + . ID=Physo145107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4840002;logic_name=jgi_physo1_1 scaffold_484 ensembl transcript 8361 8945 . + . ID=Physo145107;Parent=Physo145107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_484 . CDS 8361 8945 . + 0 ID=Physo145107;Parent=Physo145107;rank=1 scaffold_484 . exon 8361 8945 . + . ID=Physo145107.1;Parent=Physo145107;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_482 1 9706 scaffold_482 . biological_region 158 161 0.999 - . logic_name=eponine scaffold_482 . biological_region 1683 1686 0.999 - . logic_name=eponine scaffold_482 . repeat_region 2090 2105 . ? . description=dust scaffold_482 . repeat_region 2112 5917 . ? . description=dust scaffold_482 . biological_region 6179 6182 0.999 + . logic_name=eponine scaffold_482 . repeat_region 6478 6700 . ? . description=trf scaffold_482 . repeat_region 6633 6747 . ? . description=trf scaffold_482 . repeat_region 6784 6824 . ? . description=trf scaffold_482 . repeat_region 9174 9223 . ? . description=dust scaffold_482 . repeat_region 9265 9280 . ? . description=dust scaffold_482 ensembl protein_coding_gene 42 819 . - . ID=Physo145102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4820001;logic_name=jgi_physo1_1 scaffold_482 ensembl transcript 42 819 . - . ID=Physo145102;Parent=Physo145102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_482 . CDS 42 635 . - 0 ID=Physo145102;Parent=Physo145102;rank=2 scaffold_482 . exon 42 635 . - . ID=Physo145102.2;Parent=Physo145102;constitutive=1;rank=2 scaffold_482 . CDS 715 819 . - 0 ID=Physo145102;Parent=Physo145102;rank=1 scaffold_482 . exon 715 819 . - . ID=Physo145102.1;Parent=Physo145102;constitutive=1;rank=1 scaffold_482 ensembl protein_coding_gene 1312 1896 . - . ID=Physo145103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4820002;logic_name=jgi_physo1_1 scaffold_482 ensembl transcript 1312 1896 . - . ID=Physo145103;Parent=Physo145103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_482 . CDS 1312 1896 . - 0 ID=Physo145103;Parent=Physo145103;rank=1 scaffold_482 . exon 1312 1896 . - . ID=Physo145103.1;Parent=Physo145103;constitutive=1;rank=1 scaffold_482 ensembl protein_coding_gene 6538 7137 . + . ID=Physo145104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4820003;logic_name=jgi_physo1_1 scaffold_482 ensembl transcript 6538 7137 . + . ID=Physo145104;Parent=Physo145104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_482 . CDS 6538 7137 . + 0 ID=Physo145104;Parent=Physo145104;rank=1 scaffold_482 . exon 6538 7137 . + . ID=Physo145104.1;Parent=Physo145104;constitutive=1;rank=1 scaffold_482 ensembl protein_coding_gene 7250 9173 . - . ID=Physo145105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4820004;logic_name=jgi_physo1_1 scaffold_482 ensembl transcript 7250 9173 . - . ID=Physo145105;Parent=Physo145105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_482 . exon 7250 7479 . - . ID=Physo145105.6;Parent=Physo145105;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_482 . CDS 7363 7479 . - 0 ID=Physo145105;Parent=Physo145105;rank=6 scaffold_482 . CDS 7544 7671 . - 0 ID=Physo145105;Parent=Physo145105;rank=5 scaffold_482 . exon 7544 7671 . - . ID=Physo145105.5;Parent=Physo145105;constitutive=1;ensembl_phase=1;rank=5 scaffold_482 . CDS 7945 8416 . - 0 ID=Physo145105;Parent=Physo145105;rank=4 scaffold_482 . exon 7945 8416 . - . ID=Physo145105.4;Parent=Physo145105;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_482 . CDS 8488 8901 . - 0 ID=Physo145105;Parent=Physo145105;rank=3 scaffold_482 . exon 8488 8901 . - . ID=Physo145105.3;Parent=Physo145105;constitutive=1;rank=3 scaffold_482 . CDS 8971 9066 . - 0 ID=Physo145105;Parent=Physo145105;rank=2 scaffold_482 . exon 8971 9066 . - . ID=Physo145105.2;Parent=Physo145105;constitutive=1;rank=2 scaffold_482 . CDS 9153 9170 . - 0 ID=Physo145105;Parent=Physo145105;rank=1 scaffold_482 . exon 9153 9173 . - . ID=Physo145105.1;Parent=Physo145105;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_479 1 9715 scaffold_479 . repeat_region 799 4120 . ? . description=dust scaffold_479 . biological_region 4191 4193 0.999 + . logic_name=eponine scaffold_479 . repeat_region 4779 5309 . ? . description=dust scaffold_479 . repeat_region 5639 5664 . ? . description=dust scaffold_479 . biological_region 9033 9037 0.999 - . logic_name=eponine scaffold_479 ensembl protein_coding_gene 4121 4565 . - . ID=Physo125904;biotype=protein_coding;external_name=estExt_Genewise1.C_4790001;logic_name=jgi_physo1_1 scaffold_479 ensembl transcript 4121 4565 . - . ID=Physo125904;Parent=Physo125904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_479 . CDS 4121 4513 . - 0 ID=Physo125904;Parent=Physo125904;rank=1 scaffold_479 . exon 4121 4565 . - . ID=Physo125904.1;Parent=Physo125904;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_477 1 9731 scaffold_477 . biological_region 176 177 0.999 + . logic_name=eponine scaffold_477 . biological_region 195 198 0.999 + . logic_name=eponine scaffold_477 . biological_region 3456 3459 0.999 - . logic_name=eponine scaffold_477 . biological_region 3477 3478 0.999 - . logic_name=eponine scaffold_477 . biological_region 4897 4898 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_474 1 9750 scaffold_474 . repeat_region 1435 1445 . ? . description=dust scaffold_474 . biological_region 5243 5246 0.999 - . logic_name=eponine scaffold_474 . biological_region 5250 5253 0.999 - . logic_name=eponine scaffold_474 . biological_region 9413 9416 0.999 + . logic_name=eponine scaffold_474 ensembl protein_coding_gene 1510 2565 . - . ID=Physo145092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4740001;logic_name=jgi_physo1_1 scaffold_474 ensembl transcript 1510 2565 . - . ID=Physo145092;Parent=Physo145092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_474 . CDS 1510 1692 . - 0 ID=Physo145092;Parent=Physo145092;rank=4 scaffold_474 . exon 1510 1692 . - . ID=Physo145092.4;Parent=Physo145092;constitutive=1;rank=4 scaffold_474 . CDS 1719 1870 . - 0 ID=Physo145092;Parent=Physo145092;rank=3 scaffold_474 . exon 1719 1870 . - . ID=Physo145092.3;Parent=Physo145092;constitutive=1;ensembl_phase=1;rank=3 scaffold_474 . CDS 2054 2486 . - 0 ID=Physo145092;Parent=Physo145092;rank=2 scaffold_474 . exon 2054 2486 . - . ID=Physo145092.2;Parent=Physo145092;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_474 . CDS 2539 2565 . - 0 ID=Physo145092;Parent=Physo145092;rank=1 scaffold_474 . exon 2539 2565 . - . ID=Physo145092.1;Parent=Physo145092;constitutive=1;rank=1 scaffold_474 ensembl protein_coding_gene 3284 4774 . - . ID=Physo145093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4740002;logic_name=jgi_physo1_1 scaffold_474 ensembl transcript 3284 4774 . - . ID=Physo145093;Parent=Physo145093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_474 . CDS 3284 4774 . - 0 ID=Physo145093;Parent=Physo145093;rank=1 scaffold_474 . exon 3284 4774 . - . ID=Physo145093.1;Parent=Physo145093;constitutive=1;rank=1 scaffold_474 ensembl protein_coding_gene 5523 6698 . - . ID=Physo145094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4740003;logic_name=jgi_physo1_1 scaffold_474 ensembl transcript 5523 6698 . - . ID=Physo145094;Parent=Physo145094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_474 . CDS 5523 6698 . - 0 ID=Physo145094;Parent=Physo145094;rank=1 scaffold_474 . exon 5523 6698 . - . ID=Physo145094.1;Parent=Physo145094;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_480 1 9760 scaffold_480 . repeat_region 1391 2378 . ? . description=dust scaffold_480 . repeat_region 3692 5176 . ? . description=dust scaffold_480 . repeat_region 6005 8959 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_476 1 9783 scaffold_476 . repeat_region 1077 2394 . ? . description=dust scaffold_476 . biological_region 4750 4753 0.999 + . logic_name=eponine scaffold_476 . repeat_region 5252 5284 . ? . description=trf scaffold_476 . repeat_region 5332 5353 . ? . description=dust scaffold_476 . repeat_region 5332 5353 . ? . description=trf scaffold_476 . repeat_region 7665 7714 . ? . description=dust scaffold_476 . biological_region 8942 8946 0.999 + . logic_name=eponine scaffold_476 . biological_region 8979 8981 0.999 - . logic_name=eponine scaffold_476 . biological_region 9001 9002 0.999 - . logic_name=eponine scaffold_476 ensembl protein_coding_gene 5232 6279 . + . ID=Physo109702;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4760001;logic_name=jgi_physo1_1 scaffold_476 ensembl transcript 5232 6279 . + . ID=Physo109702;Parent=Physo109702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_476 . exon 5232 6279 . + . ID=Physo109702.1;Parent=Physo109702;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_476 . CDS 5372 6271 . + 0 ID=Physo109702;Parent=Physo109702;rank=1 scaffold_476 ensembl protein_coding_gene 7786 8632 . - . ID=Physo109703;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4760002;logic_name=jgi_physo1_1 scaffold_476 ensembl transcript 7786 8632 . - . ID=Physo109703;Parent=Physo109703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_476 . exon 7786 7793 . - . ID=Physo109703.2;Parent=Physo109703;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_476 . CDS 7787 7793 . - 0 ID=Physo109703;Parent=Physo109703;rank=2 scaffold_476 . CDS 7815 8632 . - 0 ID=Physo109703;Parent=Physo109703;rank=1 scaffold_476 . exon 7815 8632 . - . ID=Physo109703.1;Parent=Physo109703;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_476 ensembl protein_coding_gene 648 1075 . - . ID=Physo145095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4760001;logic_name=jgi_physo1_1 scaffold_476 ensembl transcript 648 1075 . - . ID=Physo145095;Parent=Physo145095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_476 . CDS 648 965 . - 0 ID=Physo145095;Parent=Physo145095;rank=1 scaffold_476 . exon 648 1075 . - . ID=Physo145095.1;Parent=Physo145095;constitutive=1;ensembl_phase=-1;rank=1 scaffold_476 ensembl protein_coding_gene 3120 4083 . + . ID=Physo145096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4760002;logic_name=jgi_physo1_1 scaffold_476 ensembl transcript 3120 4083 . + . ID=Physo145096;Parent=Physo145096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_476 . CDS 3120 4054 . + 0 ID=Physo145096;Parent=Physo145096;rank=1 scaffold_476 . exon 3120 4054 . + . ID=Physo145096.1;Parent=Physo145096;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_476 . CDS 4076 4082 . + 0 ID=Physo145096;Parent=Physo145096;rank=2 scaffold_476 . exon 4076 4083 . + . ID=Physo145096.2;Parent=Physo145096;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_467 1 9806 scaffold_467 . repeat_region 212 262 . ? . description=trf scaffold_467 . repeat_region 212 264 . ? . description=trf scaffold_467 . repeat_region 325 362 . ? . description=trf scaffold_467 . biological_region 2872 2873 0.999 + . logic_name=eponine scaffold_467 . repeat_region 3306 3356 . ? . description=trf scaffold_467 . repeat_region 3306 3358 . ? . description=trf scaffold_467 . repeat_region 3419 3456 . ? . description=trf scaffold_467 . biological_region 3674 3676 0.999 - . logic_name=eponine scaffold_467 . repeat_region 3905 6316 . ? . description=dust scaffold_467 . biological_region 6456 6456 0.999 - . logic_name=eponine scaffold_467 . repeat_region 7658 7708 . ? . description=trf scaffold_467 . repeat_region 7658 7710 . ? . description=trf scaffold_467 . repeat_region 7771 7808 . ? . description=trf scaffold_467 . repeat_region 9465 9500 . ? . description=trf scaffold_467 . repeat_region 9561 9613 . ? . description=trf scaffold_467 . repeat_region 9561 9613 . ? . description=trf scaffold_467 ensembl protein_coding_gene 3517 3904 . - . ID=Physo109701;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4670001;logic_name=jgi_physo1_1 scaffold_467 ensembl transcript 3517 3904 . - . ID=Physo109701;Parent=Physo109701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_467 . CDS 3517 3897 . - 0 ID=Physo109701;Parent=Physo109701;rank=1 scaffold_467 . exon 3517 3904 . - . ID=Physo109701.1;Parent=Physo109701;constitutive=1;ensembl_phase=-1;rank=1 scaffold_467 ensembl protein_coding_gene 6485 7511 . - . ID=Physo145087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4670002;logic_name=jgi_physo1_1 scaffold_467 ensembl transcript 6485 7511 . - . ID=Physo145087;Parent=Physo145087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_467 . CDS 6485 6500 . - 0 ID=Physo145087;Parent=Physo145087;rank=2 scaffold_467 . exon 6485 6500 . - . ID=Physo145087.2;Parent=Physo145087;constitutive=1;ensembl_phase=2;rank=2 scaffold_467 . CDS 6616 7511 . - 0 ID=Physo145087;Parent=Physo145087;rank=1 scaffold_467 . exon 6616 7511 . - . ID=Physo145087.1;Parent=Physo145087;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_472 1 9810 scaffold_472 . repeat_region 223 753 . + . description=GypsyPi-1c_I-int scaffold_472 . repeat_region 754 1078 . ? . description=dust scaffold_472 . repeat_region 1087 2084 . + . description=GypsyPi-1c_I-int scaffold_472 . biological_region 1282 1285 0.999 + . logic_name=eponine scaffold_472 . repeat_region 2506 2529 . ? . description=trf scaffold_472 . biological_region 3581 3583 0.999 + . logic_name=eponine scaffold_472 . repeat_region 4704 7930 . ? . description=dust scaffold_472 . repeat_region 8813 9085 . ? . description=dust scaffold_472 . repeat_region 9503 9540 . ? . description=trf scaffold_472 . repeat_region 9595 9774 . + . description=GypsyPi-1c_I-int scaffold_472 ensembl protein_coding_gene 113 2102 . + . ID=Physo145089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4720001;logic_name=jgi_physo1_1 scaffold_472 ensembl transcript 113 2102 . + . ID=Physo145089;Parent=Physo145089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_472 . CDS 113 729 . + 0 ID=Physo145089;Parent=Physo145089;rank=1 scaffold_472 . exon 113 729 . + . ID=Physo145089.1;Parent=Physo145089;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_472 . CDS 1218 1650 . + 0 ID=Physo145089;Parent=Physo145089;rank=2 scaffold_472 . exon 1218 1650 . + . ID=Physo145089.2;Parent=Physo145089;constitutive=1;ensembl_phase=2;rank=2 scaffold_472 . CDS 1746 2102 . + 0 ID=Physo145089;Parent=Physo145089;rank=3 scaffold_472 . exon 1746 2102 . + . ID=Physo145089.3;Parent=Physo145089;constitutive=1;rank=3 scaffold_472 ensembl protein_coding_gene 3632 3961 . + . ID=Physo145090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4720002;logic_name=jgi_physo1_1 scaffold_472 ensembl transcript 3632 3961 . + . ID=Physo145090;Parent=Physo145090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_472 . CDS 3632 3961 . + 0 ID=Physo145090;Parent=Physo145090;rank=1 scaffold_472 . exon 3632 3961 . + . ID=Physo145090.1;Parent=Physo145090;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_478 1 9822 scaffold_478 . biological_region 64 68 0.999 + . logic_name=eponine scaffold_478 . biological_region 124 125 0.999 + . logic_name=eponine scaffold_478 . biological_region 192 195 0.999 + . logic_name=eponine scaffold_478 . biological_region 219 221 0.999 - . logic_name=eponine scaffold_478 . biological_region 257 261 0.999 - . logic_name=eponine scaffold_478 . biological_region 474 475 0.999 + . logic_name=eponine scaffold_478 . repeat_region 792 1979 . + . description=GypsyPi-1c_I-int scaffold_478 . repeat_region 2169 2449 . + . description=GypsyPi-1c_I-int scaffold_478 . biological_region 2999 2999 0.999 + . logic_name=eponine scaffold_478 . biological_region 3095 3098 0.999 - . logic_name=eponine scaffold_478 . repeat_region 6922 6971 . ? . description=dust scaffold_478 . repeat_region 6972 8100 . + . description=Gypsy-2-I_PI-int scaffold_478 . repeat_region 8085 8170 . + . description=Gypsy-2-I_PI-int scaffold_478 . repeat_region 8613 8679 . ? . description=trf scaffold_478 . repeat_region 8613 8679 . ? . description=trf scaffold_478 . repeat_region 8614 8679 . ? . description=trf scaffold_478 . repeat_region 8615 8710 . ? . description=dust scaffold_478 . repeat_region 8874 8949 . ? . description=trf scaffold_478 . repeat_region 8902 8973 . ? . description=trf scaffold_478 . repeat_region 8902 8982 . ? . description=trf scaffold_478 . repeat_region 9736 9754 . ? . description=dust scaffold_478 ensembl protein_coding_gene 7248 7868 . + . ID=Physo125901;biotype=protein_coding;external_name=estExt_Genewise1.C_4780002;logic_name=jgi_physo1_1 scaffold_478 ensembl transcript 7248 7868 . + . ID=Physo125901;Parent=Physo125901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_478 . exon 7248 7868 . + . ID=Physo125901.1;Parent=Physo125901;constitutive=1;ensembl_phase=-1;rank=1 scaffold_478 . CDS 7512 7868 . + 0 ID=Physo125901;Parent=Physo125901;rank=1 scaffold_478 ensembl protein_coding_gene 102 2245 . + . ID=Physo145099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4780001;logic_name=jgi_physo1_1 scaffold_478 ensembl transcript 102 2245 . + . ID=Physo145099;Parent=Physo145099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_478 . exon 102 1920 . + . ID=Physo145099.1;Parent=Physo145099;constitutive=1;ensembl_phase=-1;rank=1 scaffold_478 . CDS 370 1920 . + 0 ID=Physo145099;Parent=Physo145099;rank=1 scaffold_478 . CDS 2004 2156 . + 0 ID=Physo145099;Parent=Physo145099;rank=2 scaffold_478 . exon 2004 2156 . + . ID=Physo145099.2;Parent=Physo145099;constitutive=1;rank=2 scaffold_478 . CDS 2231 2245 . + 0 ID=Physo145099;Parent=Physo145099;rank=3 scaffold_478 . exon 2231 2245 . + . ID=Physo145099.3;Parent=Physo145099;constitutive=1;rank=3 scaffold_478 ensembl protein_coding_gene 8464 9452 . - . ID=Physo145101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4780003;logic_name=jgi_physo1_1 scaffold_478 ensembl transcript 8464 9452 . - . ID=Physo145101;Parent=Physo145101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_478 . CDS 8464 9140 . - 0 ID=Physo145101;Parent=Physo145101;rank=2 scaffold_478 . exon 8464 9140 . - . ID=Physo145101.2;Parent=Physo145101;constitutive=1;ensembl_phase=1;rank=2 scaffold_478 . CDS 9422 9452 . - 0 ID=Physo145101;Parent=Physo145101;rank=1 scaffold_478 . exon 9422 9452 . - . ID=Physo145101.1;Parent=Physo145101;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_485 1 9829 scaffold_485 . biological_region 417 421 0.999 - . logic_name=eponine scaffold_485 . repeat_region 886 2111 . ? . description=dust scaffold_485 . repeat_region 4094 8495 . ? . description=dust scaffold_485 . repeat_region 8496 9829 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_475 1 9837 scaffold_475 . repeat_region 1320 5334 . ? . description=dust scaffold_475 . repeat_region 6216 6223 . ? . description=dust scaffold_475 . biological_region 6900 6900 0.999 + . logic_name=eponine scaffold_475 . repeat_region 7847 8530 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_470 1 9861 scaffold_470 . biological_region 133 133 0.999 + . logic_name=eponine scaffold_470 . biological_region 228 236 0.999 - . logic_name=eponine scaffold_470 . repeat_region 1171 5187 . ? . description=dust scaffold_470 . repeat_region 7357 8155 . ? . description=dust scaffold_470 . repeat_region 9373 9687 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_471 1 9865 scaffold_471 . repeat_region 1717 6251 . ? . description=dust scaffold_471 . repeat_region 7157 7165 . ? . description=dust scaffold_471 . repeat_region 7809 7826 . ? . description=dust scaffold_471 . repeat_region 8373 9136 . ? . description=dust scaffold_471 . repeat_region 9374 9410 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_469 1 9976 scaffold_469 . biological_region 1588 1588 0.999 - . logic_name=eponine scaffold_469 . repeat_region 1689 1696 . ? . description=dust scaffold_469 . biological_region 2299 2302 0.999 + . logic_name=eponine scaffold_469 . biological_region 2461 2461 0.999 + . logic_name=eponine scaffold_469 . biological_region 2814 2816 0.999 - . logic_name=eponine scaffold_469 . repeat_region 5764 5813 . ? . description=dust scaffold_469 . biological_region 7333 7334 0.999 - . logic_name=eponine scaffold_469 . biological_region 7481 7483 0.999 - . logic_name=eponine scaffold_469 . biological_region 8033 8038 0.999 + . logic_name=eponine scaffold_469 . biological_region 8706 8708 0.999 + . logic_name=eponine scaffold_469 . repeat_region 8954 8961 . ? . description=dust scaffold_469 . repeat_region 9058 9065 . ? . description=dust scaffold_469 . repeat_region 9139 9188 . ? . description=dust scaffold_469 . biological_region 9488 9492 0.999 + . logic_name=eponine scaffold_469 . repeat_region 9592 9747 . ? . description=trf scaffold_469 . repeat_region 9615 9750 . ? . description=trf scaffold_469 ensembl pseudogenic_tRNA 7428 7499 . + . ID=EPrPSOG00000000221;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_469 ensembl transcript 7428 7499 . + . ID=EPrPSOT00000000221;Parent=EPrPSOG00000000221;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_469 . exon 7428 7499 . + . ID=EPrPSOE00000000221;Parent=EPrPSOT00000000221;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_448 1 10014 scaffold_448 . biological_region 392 393 0.999 - . logic_name=eponine scaffold_448 . repeat_region 805 828 . ? . description=trf scaffold_448 . repeat_region 1305 4271 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_466 1 10051 scaffold_466 . repeat_region 2522 3336 . ? . description=dust scaffold_466 ensembl protein_coding_gene 2348 2461 . - . ID=Physo125880;biotype=protein_coding;external_name=estExt_Genewise1.C_4660001;logic_name=jgi_physo1_1 scaffold_466 ensembl transcript 2348 2461 . - . ID=Physo125880;Parent=Physo125880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_466 . exon 2348 2461 . - . ID=Physo125880.1;Parent=Physo125880;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_466 . CDS 2350 2460 . - 0 ID=Physo125880;Parent=Physo125880;rank=1 scaffold_466 ensembl protein_coding_gene 3887 4303 . + . ID=Physo125881;biotype=protein_coding;external_name=estExt_Genewise1.C_4660002;logic_name=jgi_physo1_1 scaffold_466 ensembl transcript 3887 4303 . + . ID=Physo125881;Parent=Physo125881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_466 . exon 3887 4303 . + . ID=Physo125881.1;Parent=Physo125881;constitutive=1;ensembl_phase=-1;rank=1 scaffold_466 . CDS 3923 4303 . + 0 ID=Physo125881;Parent=Physo125881;rank=1 scaffold_466 . biological_region 5132 5135 0.999 + . logic_name=eponine scaffold_466 . repeat_region 5453 5826 . + . description=GypsyPi-1c_I-int scaffold_466 . biological_region 5560 5561 0.999 + . logic_name=eponine scaffold_466 . repeat_region 5898 7573 . + . description=GypsyPi-1c_I-int scaffold_466 . biological_region 6711 6712 0.999 - . logic_name=eponine scaffold_466 . biological_region 8735 8738 0.999 - . logic_name=eponine scaffold_466 . biological_region 9096 9098 0.999 + . logic_name=eponine scaffold_466 ensembl protein_coding_gene 6240 7349 . + . ID=Physo109700;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4660001;logic_name=jgi_physo1_1 scaffold_466 ensembl transcript 6240 7349 . + . ID=Physo109700;Parent=Physo109700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_466 . CDS 6240 7349 . + 0 ID=Physo109700;Parent=Physo109700;rank=1 scaffold_466 . exon 6240 7349 . + . ID=Physo109700.1;Parent=Physo109700;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_468 1 10066 scaffold_468 . repeat_region 181 212 . ? . description=trf scaffold_468 . repeat_region 1173 1211 . ? . description=trf scaffold_468 . biological_region 2610 2614 0.999 + . logic_name=eponine scaffold_468 . repeat_region 2734 2756 . ? . description=trf scaffold_468 . biological_region 2966 2967 0.999 - . logic_name=eponine scaffold_468 . repeat_region 3924 3996 . ? . description=trf scaffold_468 . repeat_region 4393 5719 . ? . description=dust scaffold_468 ensembl protein_coding_gene 1585 3108 . - . ID=Physo145088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4680001;logic_name=jgi_physo1_1 scaffold_468 ensembl transcript 1585 3108 . - . ID=Physo145088;Parent=Physo145088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_468 . CDS 1585 3108 . - 0 ID=Physo145088;Parent=Physo145088;rank=1 scaffold_468 . exon 1585 3108 . - . ID=Physo145088.1;Parent=Physo145088;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_464 1 10130 scaffold_464 . repeat_region 768 817 . ? . description=dust scaffold_464 ensembl protein_coding_gene 21 749 . - . ID=Physo145078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4640001;logic_name=jgi_physo1_1 scaffold_464 ensembl transcript 21 749 . - . ID=Physo145078;Parent=Physo145078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_464 . CDS 21 510 . - 0 ID=Physo145078;Parent=Physo145078;rank=2 scaffold_464 . exon 21 510 . - . ID=Physo145078.2;Parent=Physo145078;constitutive=1;ensembl_phase=2;rank=2 scaffold_464 . CDS 532 749 . - 0 ID=Physo145078;Parent=Physo145078;rank=1 scaffold_464 . exon 532 749 . - . ID=Physo145078.1;Parent=Physo145078;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_464 ensembl protein_coding_gene 2808 4514 . + . ID=Physo145079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4640002;logic_name=jgi_physo1_1 scaffold_464 ensembl transcript 2808 4514 . + . ID=Physo145079;Parent=Physo145079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_464 . CDS 2808 2891 . + 0 ID=Physo145079;Parent=Physo145079;rank=1 scaffold_464 . exon 2808 2891 . + . ID=Physo145079.1;Parent=Physo145079;constitutive=1;rank=1 scaffold_464 . CDS 3150 3179 . + 0 ID=Physo145079;Parent=Physo145079;rank=2 scaffold_464 . exon 3150 3179 . + . ID=Physo145079.2;Parent=Physo145079;constitutive=1;rank=2 scaffold_464 . CDS 3954 4514 . + 0 ID=Physo145079;Parent=Physo145079;rank=3 scaffold_464 . exon 3954 4514 . + . ID=Physo145079.3;Parent=Physo145079;constitutive=1;rank=3 scaffold_464 ensembl protein_coding_gene 6286 7493 . + . ID=Physo145080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4640003;logic_name=jgi_physo1_1 scaffold_464 ensembl transcript 6286 7493 . + . ID=Physo145080;Parent=Physo145080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_464 . CDS 6286 7009 . + 0 ID=Physo145080;Parent=Physo145080;rank=1 scaffold_464 . exon 6286 7009 . + . ID=Physo145080.1;Parent=Physo145080;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_464 . CDS 7105 7493 . + 0 ID=Physo145080;Parent=Physo145080;rank=2 scaffold_464 . exon 7105 7493 . + . ID=Physo145080.2;Parent=Physo145080;constitutive=1;ensembl_phase=1;rank=2 scaffold_464 ensembl protein_coding_gene 9635 10009 . - . ID=Physo145081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4640004;logic_name=jgi_physo1_1 scaffold_464 ensembl transcript 9635 10009 . - . ID=Physo145081;Parent=Physo145081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_464 . CDS 9635 9829 . - 0 ID=Physo145081;Parent=Physo145081;rank=1 scaffold_464 . exon 9635 10009 . - . ID=Physo145081.1;Parent=Physo145081;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_401 1 10131 scaffold_401 . repeat_region 488 496 . ? . description=dust scaffold_401 . biological_region 764 767 0.999 + . logic_name=eponine scaffold_401 . repeat_region 2435 2484 . ? . description=dust scaffold_401 . repeat_region 3718 3725 . ? . description=dust scaffold_401 . repeat_region 5256 5323 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_465 1 10165 scaffold_465 . repeat_region 668 791 . ? . description=dust scaffold_465 . repeat_region 2157 2268 . ? . description=dust scaffold_465 . biological_region 2428 2433 0.999 + . logic_name=eponine scaffold_465 . repeat_region 4146 4197 . ? . description=trf scaffold_465 . repeat_region 4834 4887 . ? . description=dust scaffold_465 . repeat_region 4852 4875 . ? . description=trf scaffold_465 . repeat_region 4905 4950 . ? . description=trf scaffold_465 . repeat_region 4910 4951 . ? . description=trf scaffold_465 . repeat_region 4913 4950 . ? . description=trf scaffold_465 ensembl protein_coding_gene 2437 3748 . + . ID=Physo145082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4650001;logic_name=jgi_physo1_1 scaffold_465 ensembl transcript 2437 3748 . + . ID=Physo145082;Parent=Physo145082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_465 . CDS 2437 3492 . + 0 ID=Physo145082;Parent=Physo145082;rank=1 scaffold_465 . exon 2437 3748 . + . ID=Physo145082.1;Parent=Physo145082;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_465 ensembl protein_coding_gene 3842 6924 . - . ID=Physo145083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4650002;logic_name=jgi_physo1_1 scaffold_465 ensembl transcript 3842 6924 . - . ID=Physo145083;Parent=Physo145083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_465 . exon 3842 6924 . - . ID=Physo145083.1;Parent=Physo145083;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_465 . CDS 3940 6924 . - 0 ID=Physo145083;Parent=Physo145083;rank=1 scaffold_465 ensembl protein_coding_gene 7198 9865 . + . ID=Physo145084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4650003;logic_name=jgi_physo1_1 scaffold_465 ensembl transcript 7198 9865 . + . ID=Physo145084;Parent=Physo145084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_465 . CDS 7198 7295 . + 0 ID=Physo145084;Parent=Physo145084;rank=1 scaffold_465 . exon 7198 7295 . + . ID=Physo145084.1;Parent=Physo145084;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_465 . CDS 7360 9865 . + 0 ID=Physo145084;Parent=Physo145084;rank=2 scaffold_465 . exon 7360 9865 . + . ID=Physo145084.2;Parent=Physo145084;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_463 1 10168 scaffold_463 . biological_region 891 893 0.999 - . logic_name=eponine scaffold_463 . repeat_region 1013 4360 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_462 1 10176 scaffold_462 . repeat_region 2 1349 . - . description=GypsyPi-1c_I-int scaffold_462 . repeat_region 1350 6775 . ? . description=dust scaffold_462 . biological_region 7711 7711 0.999 - . logic_name=eponine scaffold_462 . biological_region 9808 9811 0.999 + . logic_name=eponine scaffold_462 . biological_region 9857 9862 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_455 1 10191 scaffold_455 . repeat_region 4034 4602 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_461 1 10208 scaffold_461 . repeat_region 1183 1642 . + . description=GypsyPi-1c_I-int scaffold_461 . repeat_region 4105 4158 . ? . description=trf scaffold_461 . repeat_region 4105 4174 . ? . description=trf scaffold_461 . repeat_region 4116 4189 . ? . description=trf scaffold_461 . repeat_region 4118 4174 . ? . description=trf scaffold_461 . repeat_region 5114 8484 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_460 1 10217 scaffold_460 . repeat_region 1328 1336 . ? . description=dust scaffold_460 . biological_region 1395 1397 0.999 + . logic_name=eponine scaffold_460 . repeat_region 2985 2993 . ? . description=dust scaffold_460 . repeat_region 3056 8445 . ? . description=dust scaffold_460 ensembl tRNA_gene 1637 1709 . + . ID=EPrPSOG00000000189;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_460 ensembl transcript 1637 1709 . + . ID=EPrPSOT00000000189;Parent=EPrPSOG00000000189;biotype=tRNA;logic_name=ncrna_eg scaffold_460 ensembl tRNA_gene 2754 2826 . + . ID=EPrPSOG00000000259;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_460 ensembl transcript 2754 2826 . + . ID=EPrPSOT00000000259;Parent=EPrPSOG00000000259;biotype=tRNA;logic_name=ncrna_eg scaffold_460 . exon 1637 1709 . + . ID=EPrPSOE00000000189;Parent=EPrPSOT00000000189;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_460 . exon 2754 2826 . + . ID=EPrPSOE00000000259;Parent=EPrPSOT00000000259;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_460 ensembl tRNA_gene 8839 8911 . - . ID=EPrPSOG00000000011;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_460 ensembl transcript 8839 8911 . - . ID=EPrPSOT00000000011;Parent=EPrPSOG00000000011;biotype=tRNA;logic_name=ncrna_eg scaffold_460 ensembl tRNA_gene 10027 10099 . - . ID=EPrPSOG00000000027;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_460 ensembl transcript 10027 10099 . - . ID=EPrPSOT00000000027;Parent=EPrPSOG00000000027;biotype=tRNA;logic_name=ncrna_eg scaffold_460 ensembl tRNA_gene 9433 9505 . - . ID=EPrPSOG00000000109;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_460 ensembl transcript 9433 9505 . - . ID=EPrPSOT00000000109;Parent=EPrPSOG00000000109;biotype=tRNA;logic_name=ncrna_eg scaffold_460 . exon 8839 8911 . - . ID=EPrPSOE00000000011;Parent=EPrPSOT00000000011;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_460 . exon 10027 10099 . - . ID=EPrPSOE00000000027;Parent=EPrPSOT00000000027;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_460 . exon 9433 9505 . - . ID=EPrPSOE00000000109;Parent=EPrPSOT00000000109;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_459 1 10244 scaffold_459 . repeat_region 927 2443 . ? . description=dust scaffold_459 . repeat_region 3452 8491 . ? . description=dust scaffold_459 ensembl protein_coding_gene 2578 2838 . - . ID=Physo125874;biotype=protein_coding;external_name=estExt_Genewise1.C_4590003;logic_name=jgi_physo1_1 scaffold_459 ensembl transcript 2578 2838 . - . ID=Physo125874;Parent=Physo125874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_459 . CDS 2578 2796 . - 0 ID=Physo125874;Parent=Physo125874;rank=1 scaffold_459 . exon 2578 2838 . - . ID=Physo125874.1;Parent=Physo125874;constitutive=1;ensembl_phase=-1;rank=1 scaffold_459 . biological_region 8830 8831 0.999 + . logic_name=eponine scaffold_459 . biological_region 9013 9013 0.999 + . logic_name=eponine scaffold_459 . biological_region 9056 9056 0.999 + . logic_name=eponine scaffold_459 ensembl protein_coding_gene 8492 9148 . + . ID=Physo145077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4590001;logic_name=jgi_physo1_1 scaffold_459 ensembl transcript 8492 9148 . + . ID=Physo145077;Parent=Physo145077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_459 . exon 8492 9148 . + . ID=Physo145077.1;Parent=Physo145077;constitutive=1;ensembl_phase=-1;rank=1 scaffold_459 . CDS 8549 9148 . + 0 ID=Physo145077;Parent=Physo145077;rank=1 ##gff-version 3 ##sequence-region scaffold_421 1 10307 scaffold_421 . repeat_region 1 1292 . ? . description=trf scaffold_421 . repeat_region 1307 1356 . ? . description=dust scaffold_421 . biological_region 2095 2096 0.999 + . logic_name=eponine scaffold_421 . biological_region 2184 2185 0.999 - . logic_name=eponine scaffold_421 . biological_region 2207 2213 0.999 - . logic_name=eponine scaffold_421 . biological_region 2760 2764 0.999 + . logic_name=eponine scaffold_421 . repeat_region 3231 3280 . ? . description=dust scaffold_421 . repeat_region 3543 3640 . ? . description=trf scaffold_421 . repeat_region 3720 3728 . ? . description=dust scaffold_421 . repeat_region 3720 6096 . - . description=GypsyPi-1c_I-int scaffold_421 . biological_region 4315 4318 0.999 - . logic_name=eponine scaffold_421 . biological_region 4747 4751 0.999 - . logic_name=eponine scaffold_421 ensembl protein_coding_gene 3798 7605 . - . ID=Physo125810;biotype=protein_coding;external_name=estExt_Genewise1.C_4210001;logic_name=jgi_physo1_1 scaffold_421 ensembl transcript 3798 7605 . - . ID=Physo125810;Parent=Physo125810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_421 . CDS 3798 5762 . - 0 ID=Physo125810;Parent=Physo125810;rank=1 scaffold_421 . exon 3798 6138 . - . ID=Physo125810.3;Parent=Physo125810;constitutive=1;ensembl_phase=-1;rank=3 scaffold_421 ensembl protein_coding_gene 37 1004 . + . ID=Physo125812;biotype=protein_coding;external_name=estExt_Genewise1.C_4210003;logic_name=jgi_physo1_1 scaffold_421 ensembl transcript 37 1004 . + . ID=Physo125812;Parent=Physo125812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_421 . exon 37 164 . + . ID=Physo125812.1;Parent=Physo125812;constitutive=1;ensembl_phase=-1;rank=1 scaffold_421 . CDS 39 164 . + 0 ID=Physo125812;Parent=Physo125812;rank=1 scaffold_421 . CDS 214 333 . + 0 ID=Physo125812;Parent=Physo125812;rank=2 scaffold_421 . exon 214 333 . + . ID=Physo125812.2;Parent=Physo125812;constitutive=1;rank=2 scaffold_421 . CDS 721 840 . + 0 ID=Physo125812;Parent=Physo125812;rank=3 scaffold_421 . exon 721 840 . + . ID=Physo125812.3;Parent=Physo125812;constitutive=1;rank=3 scaffold_421 . CDS 890 1003 . + 0 ID=Physo125812;Parent=Physo125812;rank=4 scaffold_421 . exon 890 1004 . + . ID=Physo125812.4;Parent=Physo125812;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_421 . exon 6393 6478 . - . ID=Physo125810.2;Parent=Physo125810;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_421 . exon 7234 7605 . - . ID=Physo125810.1;Parent=Physo125810;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_421 ensembl protein_coding_gene 9955 10302 . - . ID=Physo125811;biotype=protein_coding;external_name=estExt_Genewise1.C_4210002;logic_name=jgi_physo1_1 scaffold_421 ensembl transcript 9955 10302 . - . ID=Physo125811;Parent=Physo125811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_421 . CDS 9955 10176 . - 0 ID=Physo125811;Parent=Physo125811;rank=1 scaffold_421 . exon 9955 10302 . - . ID=Physo125811.1;Parent=Physo125811;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_457 1 10311 scaffold_457 . biological_region 240 242 0.999 + . logic_name=eponine scaffold_457 . repeat_region 461 496 . ? . description=trf scaffold_457 . repeat_region 501 545 . ? . description=trf scaffold_457 . repeat_region 585 637 . ? . description=trf scaffold_457 . repeat_region 585 637 . ? . description=trf scaffold_457 . repeat_region 729 2352 . - . description=Polinton-1_PI scaffold_457 . repeat_region 2446 2496 . ? . description=trf scaffold_457 . repeat_region 2446 2498 . ? . description=trf scaffold_457 . repeat_region 2559 2596 . ? . description=trf scaffold_457 . repeat_region 2702 2896 . - . description=Polinton-1_PI scaffold_457 . repeat_region 3129 4176 . - . description=Polinton-1_PI scaffold_457 . repeat_region 4601 4609 . ? . description=dust scaffold_457 ensembl protein_coding_gene 1 398 . + . ID=Physo109699;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4570001;logic_name=jgi_physo1_1 scaffold_457 ensembl transcript 1 398 . + . ID=Physo109699;Parent=Physo109699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_457 . exon 1 398 . + . ID=Physo109699.1;Parent=Physo109699;constitutive=1;ensembl_phase=-1;rank=1 scaffold_457 . CDS 18 398 . + 0 ID=Physo109699;Parent=Physo109699;rank=1 scaffold_457 ensembl protein_coding_gene 5286 9428 . + . ID=Physo145076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4570002;logic_name=jgi_physo1_1 scaffold_457 ensembl transcript 5286 9428 . + . ID=Physo145076;Parent=Physo145076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_457 . CDS 5286 6585 . + 0 ID=Physo145076;Parent=Physo145076;rank=1 scaffold_457 . exon 5286 6585 . + . ID=Physo145076.1;Parent=Physo145076;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_457 . CDS 9088 9428 . + 0 ID=Physo145076;Parent=Physo145076;rank=2 scaffold_457 . exon 9088 9428 . + . ID=Physo145076.2;Parent=Physo145076;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_451 1 10412 scaffold_451 . biological_region 767 771 0.999 + . logic_name=eponine scaffold_451 . repeat_region 871 916 . ? . description=trf scaffold_451 . repeat_region 2768 6830 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_446 1 10413 scaffold_446 . repeat_region 1 812 . ? . description=trf scaffold_446 . repeat_region 1670 1814 . ? . description=trf scaffold_446 . repeat_region 3675 3689 . ? . description=dust scaffold_446 . repeat_region 4043 4058 . ? . description=dust scaffold_446 . repeat_region 4072 4080 . ? . description=dust scaffold_446 . biological_region 4327 4328 0.999 + . logic_name=eponine scaffold_446 . repeat_region 4535 4543 . ? . description=dust scaffold_446 . repeat_region 7944 8224 . - . description=GypsyPi-1c_I-int scaffold_446 . repeat_region 8444 9862 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_456 1 10425 scaffold_456 . biological_region 331 331 0.999 - . logic_name=eponine scaffold_456 . repeat_region 422 461 . ? . description=trf scaffold_456 . biological_region 678 681 0.999 - . logic_name=eponine scaffold_456 . biological_region 709 713 0.999 - . logic_name=eponine scaffold_456 . repeat_region 805 4432 . ? . description=dust scaffold_456 . repeat_region 7165 7423 . - . description=Polinton-1_PI scaffold_456 . repeat_region 9409 9703 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_458 1 10433 scaffold_458 . repeat_region 3012 3140 . ? . description=trf scaffold_458 . repeat_region 4252 4568 . ? . description=dust scaffold_458 . biological_region 5863 5864 0.999 - . logic_name=eponine scaffold_458 . biological_region 5902 5906 0.999 + . logic_name=eponine scaffold_458 . biological_region 6263 6265 0.999 + . logic_name=eponine scaffold_458 . biological_region 6323 6324 0.999 + . logic_name=eponine scaffold_458 . biological_region 9755 9755 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_447 1 10466 scaffold_447 . repeat_region 1080 1105 . ? . description=dust scaffold_447 . repeat_region 1846 2256 . ? . description=dust scaffold_447 . repeat_region 3901 7118 . ? . description=dust scaffold_447 . repeat_region 7119 7853 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_452 1 10499 scaffold_452 . repeat_region 3141 3149 . ? . description=dust scaffold_452 . biological_region 3424 3425 0.999 - . logic_name=eponine scaffold_452 . biological_region 3564 3568 0.999 + . logic_name=eponine scaffold_452 . biological_region 3600 3605 0.999 - . logic_name=eponine scaffold_452 . biological_region 4810 4813 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_449 1 10512 scaffold_449 . repeat_region 1312 6119 . ? . description=dust scaffold_449 . biological_region 6251 6252 0.999 - . logic_name=eponine scaffold_449 . repeat_region 9170 9221 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_453 1 10533 scaffold_453 . repeat_region 1573 2488 . ? . description=dust scaffold_453 . repeat_region 4030 9753 . ? . description=dust scaffold_453 . repeat_region 9774 9869 . ? . description=trf scaffold_453 . biological_region 10232 10235 0.999 - . logic_name=eponine scaffold_453 . biological_region 10289 10289 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_513 1 10539 scaffold_513 . repeat_region 1328 1377 . ? . description=dust scaffold_513 . repeat_region 3191 3240 . ? . description=dust scaffold_513 . repeat_region 3912 3961 . ? . description=dust scaffold_513 . biological_region 7559 7561 0.999 + . logic_name=eponine scaffold_513 . repeat_region 7639 7711 . ? . description=trf scaffold_513 . repeat_region 7683 9457 . ? . description=trf scaffold_513 . repeat_region 8023 8754 . ? . description=trf scaffold_513 . repeat_region 8363 8414 . ? . description=trf scaffold_513 . repeat_region 8726 10539 . ? . description=trf scaffold_513 . repeat_region 9066 9117 . ? . description=trf scaffold_513 . repeat_region 9429 9480 . ? . description=trf scaffold_513 . biological_region 9512 9513 0.999 - . logic_name=eponine scaffold_513 . repeat_region 9792 9843 . ? . description=trf scaffold_513 . biological_region 9875 9876 0.999 - . logic_name=eponine scaffold_513 . repeat_region 10155 10206 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_445 1 10594 scaffold_445 . repeat_region 569 588 . ? . description=dust scaffold_445 . repeat_region 569 588 . ? . description=trf scaffold_445 . biological_region 767 770 0.999 + . logic_name=eponine scaffold_445 . repeat_region 894 916 . ? . description=dust scaffold_445 . biological_region 1101 1104 0.999 + . logic_name=eponine scaffold_445 . biological_region 1909 1912 0.999 + . logic_name=eponine scaffold_445 . biological_region 2033 2037 0.999 + . logic_name=eponine scaffold_445 . biological_region 2110 2112 0.999 - . logic_name=eponine scaffold_445 . biological_region 2674 2674 0.999 - . logic_name=eponine scaffold_445 . biological_region 3073 3076 0.999 + . logic_name=eponine scaffold_445 . biological_region 3392 3393 0.999 - . logic_name=eponine scaffold_445 . repeat_region 3620 9208 . ? . description=dust scaffold_445 ensembl protein_coding_gene 91 932 . - . ID=Physo145070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4450001;logic_name=jgi_physo1_1 scaffold_445 ensembl transcript 91 932 . - . ID=Physo145070;Parent=Physo145070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_445 . exon 91 551 . - . ID=Physo145070.2;Parent=Physo145070;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_445 . CDS 131 551 . - 0 ID=Physo145070;Parent=Physo145070;rank=2 scaffold_445 . CDS 654 874 . - 0 ID=Physo145070;Parent=Physo145070;rank=1 scaffold_445 . exon 654 932 . - . ID=Physo145070.1;Parent=Physo145070;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_445 ensembl protein_coding_gene 1969 3478 . + . ID=Physo145071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4450002;logic_name=jgi_physo1_1 scaffold_445 ensembl transcript 1969 3478 . + . ID=Physo145071;Parent=Physo145071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_445 . CDS 1969 3434 . + 0 ID=Physo145071;Parent=Physo145071;rank=1 scaffold_445 . exon 1969 3434 . + . ID=Physo145071.1;Parent=Physo145071;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_445 . CDS 3475 3478 . + 0 ID=Physo145071;Parent=Physo145071;rank=2 scaffold_445 . exon 3475 3478 . + . ID=Physo145071.2;Parent=Physo145071;constitutive=1;ensembl_phase=2;rank=2 scaffold_445 ensembl protein_coding_gene 9722 10506 . - . ID=Physo145072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4450003;logic_name=jgi_physo1_1 scaffold_445 ensembl transcript 9722 10506 . - . ID=Physo145072;Parent=Physo145072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_445 . CDS 9722 10011 . - 0 ID=Physo145072;Parent=Physo145072;rank=3 scaffold_445 . exon 9722 10011 . - . ID=Physo145072.3;Parent=Physo145072;constitutive=1;ensembl_phase=1;rank=3 scaffold_445 . CDS 10105 10279 . - 0 ID=Physo145072;Parent=Physo145072;rank=2 scaffold_445 . exon 10105 10279 . - . ID=Physo145072.2;Parent=Physo145072;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_445 . CDS 10408 10506 . - 0 ID=Physo145072;Parent=Physo145072;rank=1 scaffold_445 . exon 10408 10506 . - . ID=Physo145072.1;Parent=Physo145072;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_442 1 10645 scaffold_442 . repeat_region 1237 1244 . ? . description=dust scaffold_442 . biological_region 2760 2770 0.999 + . logic_name=eponine scaffold_442 . biological_region 2786 2788 0.999 + . logic_name=eponine scaffold_442 . biological_region 3051 3055 0.999 - . logic_name=eponine scaffold_442 . biological_region 3127 3131 0.999 - . logic_name=eponine scaffold_442 . biological_region 3141 3142 0.999 + . logic_name=eponine scaffold_442 . biological_region 3230 3232 0.999 - . logic_name=eponine scaffold_442 . repeat_region 3236 3295 . + . description=(GCTG)n scaffold_442 . repeat_region 3258 3295 . ? . description=dust scaffold_442 . repeat_region 3258 3295 . ? . description=trf scaffold_442 . biological_region 3367 3371 0.999 + . logic_name=eponine scaffold_442 . biological_region 3819 3821 0.999 + . logic_name=eponine scaffold_442 . biological_region 3909 3914 0.999 - . logic_name=eponine scaffold_442 . biological_region 4011 4020 0.999 - . logic_name=eponine scaffold_442 . biological_region 4165 4165 0.999 + . logic_name=eponine scaffold_442 . biological_region 4201 4204 0.999 - . logic_name=eponine scaffold_442 . biological_region 4269 4272 0.999 - . logic_name=eponine scaffold_442 . biological_region 4285 4285 0.999 + . logic_name=eponine scaffold_442 . repeat_region 4294 4322 . ? . description=trf scaffold_442 . repeat_region 4297 4322 . ? . description=dust scaffold_442 . repeat_region 4737 4746 . ? . description=dust scaffold_442 ensembl protein_coding_gene 640 930 . + . ID=Physo125859;biotype=protein_coding;external_name=estExt_Genewise1.C_4420001;logic_name=jgi_physo1_1 scaffold_442 ensembl transcript 640 930 . + . ID=Physo125859;Parent=Physo125859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_442 . exon 640 930 . + . ID=Physo125859.1;Parent=Physo125859;constitutive=1;ensembl_phase=-1;rank=1 scaffold_442 . CDS 706 930 . + 0 ID=Physo125859;Parent=Physo125859;rank=1 scaffold_442 ensembl protein_coding_gene 1341 1923 . - . ID=Physo145062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4420001;logic_name=jgi_physo1_1 scaffold_442 ensembl transcript 1341 1923 . - . ID=Physo145062;Parent=Physo145062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_442 . exon 1341 1923 . - . ID=Physo145062.1;Parent=Physo145062;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_442 . CDS 1473 1835 . - 0 ID=Physo145062;Parent=Physo145062;rank=1 scaffold_442 ensembl protein_coding_gene 2638 3236 . - . ID=Physo145063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4420002;logic_name=jgi_physo1_1 scaffold_442 ensembl transcript 2638 3236 . - . ID=Physo145063;Parent=Physo145063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_442 . exon 2638 3236 . - . ID=Physo145063.1;Parent=Physo145063;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_442 . CDS 2856 3236 . - 0 ID=Physo145063;Parent=Physo145063;rank=1 scaffold_442 . repeat_region 9832 9876 . + . description=(CAGG)n scaffold_442 ensembl protein_coding_gene 5507 6103 . - . ID=Physo145064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4420003;logic_name=jgi_physo1_1 scaffold_442 ensembl transcript 5507 6103 . - . ID=Physo145064;Parent=Physo145064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_442 . exon 5507 6103 . - . ID=Physo145064.1;Parent=Physo145064;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_442 . CDS 5572 6102 . - 0 ID=Physo145064;Parent=Physo145064;rank=1 scaffold_442 ensembl protein_coding_gene 7193 8400 . + . ID=Physo145065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4420004;logic_name=jgi_physo1_1 scaffold_442 ensembl transcript 7193 8400 . + . ID=Physo145065;Parent=Physo145065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_442 . CDS 7193 8276 . + 0 ID=Physo145065;Parent=Physo145065;rank=1 scaffold_442 . exon 7193 8276 . + . ID=Physo145065.1;Parent=Physo145065;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_442 . CDS 8334 8354 . + 0 ID=Physo145065;Parent=Physo145065;rank=2 scaffold_442 . exon 8334 8354 . + . ID=Physo145065.2;Parent=Physo145065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_442 . CDS 8381 8400 . + 0 ID=Physo145065;Parent=Physo145065;rank=3 scaffold_442 . exon 8381 8400 . + . ID=Physo145065.3;Parent=Physo145065;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_444 1 10648 scaffold_444 . repeat_region 121 129 . ? . description=dust scaffold_444 . repeat_region 742 1145 . ? . description=dust scaffold_444 . repeat_region 1566 1767 . - . description=Polinton-1_PI scaffold_444 . repeat_region 2191 6221 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_443 1 10658 scaffold_443 . biological_region 2036 2036 0.999 + . logic_name=eponine scaffold_443 . biological_region 2478 2481 0.999 + . logic_name=eponine scaffold_443 . biological_region 2841 2845 0.999 - . logic_name=eponine scaffold_443 . repeat_region 3046 3053 . ? . description=dust scaffold_443 . biological_region 3403 3405 0.999 + . logic_name=eponine scaffold_443 ensembl protein_coding_gene 6 2923 . - . ID=Physo145066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4430001;logic_name=jgi_physo1_1 scaffold_443 ensembl transcript 6 2923 . - . ID=Physo145066;Parent=Physo145066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_443 . CDS 6 2663 . - 0 ID=Physo145066;Parent=Physo145066;rank=2 scaffold_443 . exon 6 2663 . - . ID=Physo145066.2;Parent=Physo145066;constitutive=1;rank=2 scaffold_443 . CDS 2753 2923 . - 0 ID=Physo145066;Parent=Physo145066;rank=1 scaffold_443 . exon 2753 2923 . - . ID=Physo145066.1;Parent=Physo145066;constitutive=1;rank=1 scaffold_443 ensembl protein_coding_gene 3130 3770 . + . ID=Physo145067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4430002;logic_name=jgi_physo1_1 scaffold_443 ensembl transcript 3130 3770 . + . ID=Physo145067;Parent=Physo145067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_443 . CDS 3130 3262 . + 0 ID=Physo145067;Parent=Physo145067;rank=1 scaffold_443 . exon 3130 3262 . + . ID=Physo145067.1;Parent=Physo145067;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_443 . CDS 3376 3465 . + 0 ID=Physo145067;Parent=Physo145067;rank=2 scaffold_443 . exon 3376 3465 . + . ID=Physo145067.2;Parent=Physo145067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_443 . CDS 3550 3770 . + 0 ID=Physo145067;Parent=Physo145067;rank=3 scaffold_443 . exon 3550 3770 . + . ID=Physo145067.3;Parent=Physo145067;constitutive=1;ensembl_phase=1;rank=3 scaffold_443 . repeat_region 6378 6421 . ? . description=trf scaffold_443 . repeat_region 6378 6436 . ? . description=trf scaffold_443 . repeat_region 6387 6441 . ? . description=trf scaffold_443 ensembl protein_coding_gene 6366 6745 . + . ID=Physo145068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4430003;logic_name=jgi_physo1_1 scaffold_443 ensembl transcript 6366 6745 . + . ID=Physo145068;Parent=Physo145068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_443 . CDS 6366 6624 . + 0 ID=Physo145068;Parent=Physo145068;rank=1 scaffold_443 . exon 6366 6624 . + . ID=Physo145068.1;Parent=Physo145068;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_443 . CDS 6702 6745 . + 0 ID=Physo145068;Parent=Physo145068;rank=2 scaffold_443 . exon 6702 6745 . + . ID=Physo145068.2;Parent=Physo145068;constitutive=1;ensembl_phase=1;rank=2 scaffold_443 ensembl protein_coding_gene 6903 10594 . - . ID=Physo145069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4430004;logic_name=jgi_physo1_1 scaffold_443 ensembl transcript 6903 10594 . - . ID=Physo145069;Parent=Physo145069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_443 . CDS 6903 7207 . - 0 ID=Physo145069;Parent=Physo145069;rank=3 scaffold_443 . exon 6903 7207 . - . ID=Physo145069.3;Parent=Physo145069;constitutive=1;ensembl_phase=1;rank=3 scaffold_443 . CDS 7415 8797 . - 0 ID=Physo145069;Parent=Physo145069;rank=2 scaffold_443 . exon 7415 8797 . - . ID=Physo145069.2;Parent=Physo145069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_443 . CDS 8995 10594 . - 0 ID=Physo145069;Parent=Physo145069;rank=1 scaffold_443 . exon 8995 10594 . - . ID=Physo145069.1;Parent=Physo145069;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_441 1 10661 scaffold_441 . biological_region 855 857 0.999 - . logic_name=eponine scaffold_441 . repeat_region 970 977 . ? . description=dust scaffold_441 . repeat_region 1402 2637 . ? . description=dust scaffold_441 . repeat_region 2733 2764 . ? . description=trf scaffold_441 . repeat_region 3544 6894 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_440 1 10671 scaffold_440 . repeat_region 181 311 . ? . description=trf scaffold_440 . repeat_region 1573 2808 . ? . description=dust scaffold_440 . repeat_region 3619 3634 . ? . description=dust scaffold_440 . repeat_region 3944 6534 . ? . description=dust scaffold_440 . biological_region 6893 6895 0.999 + . logic_name=eponine scaffold_440 . biological_region 6909 6910 0.999 - . logic_name=eponine scaffold_440 . biological_region 7397 7399 0.999 - . logic_name=eponine scaffold_440 . biological_region 7435 7438 0.999 + . logic_name=eponine scaffold_440 . biological_region 7454 7460 0.999 + . logic_name=eponine scaffold_440 . biological_region 7486 7486 0.999 + . logic_name=eponine scaffold_440 . biological_region 7490 7494 0.999 - . logic_name=eponine scaffold_440 . biological_region 7501 7506 0.999 - . logic_name=eponine scaffold_440 . repeat_region 8847 8971 . + . description=GypsyPi-1c_I-int scaffold_440 . biological_region 9493 9494 0.999 + . logic_name=eponine scaffold_440 . repeat_region 9543 10668 . + . description=GypsyPi-1c_I-int scaffold_440 ensembl protein_coding_gene 9351 10659 . + . ID=Physo145061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4400001;logic_name=jgi_physo1_1 scaffold_440 ensembl transcript 9351 10659 . + . ID=Physo145061;Parent=Physo145061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_440 . CDS 9351 9945 . + 0 ID=Physo145061;Parent=Physo145061;rank=1 scaffold_440 . exon 9351 9945 . + . ID=Physo145061.1;Parent=Physo145061;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_440 . CDS 10095 10657 . + 0 ID=Physo145061;Parent=Physo145061;rank=2 scaffold_440 . exon 10095 10659 . + . ID=Physo145061.2;Parent=Physo145061;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_450 1 10676 scaffold_450 . biological_region 1304 1312 0.999 + . logic_name=eponine scaffold_450 . repeat_region 1608 1657 . ? . description=dust scaffold_450 . repeat_region 2469 2518 . ? . description=dust scaffold_450 . repeat_region 3338 4756 . + . description=GypsyPi-1c_I-int scaffold_450 . biological_region 3390 3391 0.999 + . logic_name=eponine scaffold_450 . biological_region 4191 4197 0.999 + . logic_name=eponine scaffold_450 . repeat_region 5236 5370 . + . description=GypsyPi-1c_I-int scaffold_450 ensembl protein_coding_gene 1029 2349 . + . ID=Physo145073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4500001;logic_name=jgi_physo1_1 scaffold_450 ensembl transcript 1029 2349 . + . ID=Physo145073;Parent=Physo145073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_450 . CDS 1029 1053 . + 0 ID=Physo145073;Parent=Physo145073;rank=1 scaffold_450 . exon 1029 1053 . + . ID=Physo145073.1;Parent=Physo145073;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_450 . CDS 1241 1503 . + 0 ID=Physo145073;Parent=Physo145073;rank=2 scaffold_450 . exon 1241 1503 . + . ID=Physo145073.2;Parent=Physo145073;constitutive=1;ensembl_phase=1;rank=2 scaffold_450 . CDS 1708 1887 . + 0 ID=Physo145073;Parent=Physo145073;rank=3 scaffold_450 . exon 1708 1887 . + . ID=Physo145073.3;Parent=Physo145073;constitutive=1;rank=3 scaffold_450 . CDS 1987 2349 . + 0 ID=Physo145073;Parent=Physo145073;rank=4 scaffold_450 . exon 1987 2349 . + . ID=Physo145073.4;Parent=Physo145073;constitutive=1;rank=4 scaffold_450 ensembl protein_coding_gene 3522 6961 . + . ID=Physo145074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4500002;logic_name=jgi_physo1_1 scaffold_450 ensembl transcript 3522 6961 . + . ID=Physo145074;Parent=Physo145074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_450 . CDS 3522 3977 . + 0 ID=Physo145074;Parent=Physo145074;rank=1 scaffold_450 . exon 3522 3977 . + . ID=Physo145074.1;Parent=Physo145074;constitutive=1;rank=1 scaffold_450 . CDS 4037 4358 . + 0 ID=Physo145074;Parent=Physo145074;rank=2 scaffold_450 . exon 4037 4358 . + . ID=Physo145074.2;Parent=Physo145074;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_450 . CDS 4602 4945 . + 0 ID=Physo145074;Parent=Physo145074;rank=3 scaffold_450 . exon 4602 4945 . + . ID=Physo145074.3;Parent=Physo145074;constitutive=1;ensembl_phase=1;rank=3 scaffold_450 . CDS 4985 5321 . + 0 ID=Physo145074;Parent=Physo145074;rank=4 scaffold_450 . exon 4985 5321 . + . ID=Physo145074.4;Parent=Physo145074;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_450 . CDS 5544 5623 . + 0 ID=Physo145074;Parent=Physo145074;rank=5 scaffold_450 . CDS 5717 6038 . + 0 ID=Physo145074;Parent=Physo145074;rank=6 scaffold_450 . CDS 6282 6625 . + 0 ID=Physo145074;Parent=Physo145074;rank=7 scaffold_450 . CDS 6665 6961 . + 0 ID=Physo145074;Parent=Physo145074;rank=8 scaffold_450 . exon 5544 5623 . + . ID=Physo145074.5;Parent=Physo145074;constitutive=1;ensembl_phase=1;rank=5 scaffold_450 . exon 5717 6038 . + . ID=Physo145074.6;Parent=Physo145074;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_450 . exon 6282 6625 . + . ID=Physo145074.7;Parent=Physo145074;constitutive=1;ensembl_phase=1;rank=7 scaffold_450 . exon 6665 6961 . + . ID=Physo145074.8;Parent=Physo145074;constitutive=1;rank=8 ##gff-version 3 ##sequence-region scaffold_438 1 10741 scaffold_438 . biological_region 11 19 0.999 + . logic_name=eponine scaffold_438 . biological_region 281 285 0.999 - . logic_name=eponine scaffold_438 . biological_region 728 728 0.999 + . logic_name=eponine scaffold_438 . repeat_region 899 1277 . - . description=GypsyPi-1c_I-int scaffold_438 . biological_region 961 971 0.999 + . logic_name=eponine scaffold_438 . biological_region 992 996 0.999 - . logic_name=eponine scaffold_438 . biological_region 1012 1018 0.999 + . logic_name=eponine scaffold_438 . repeat_region 1318 2462 . ? . description=dust scaffold_438 . biological_region 2767 2771 0.999 + . logic_name=eponine scaffold_438 . biological_region 2767 2771 0.999 - . logic_name=eponine scaffold_438 . biological_region 2799 2802 0.999 - . logic_name=eponine scaffold_438 . biological_region 2825 2831 0.999 - . logic_name=eponine scaffold_438 . biological_region 2840 2846 0.999 + . logic_name=eponine scaffold_438 . biological_region 2851 2856 0.999 + . logic_name=eponine scaffold_438 . biological_region 2889 2897 0.999 - . logic_name=eponine scaffold_438 . biological_region 2928 2932 0.999 - . logic_name=eponine scaffold_438 . biological_region 2940 2941 0.999 - . logic_name=eponine scaffold_438 . biological_region 3064 3065 0.999 - . logic_name=eponine scaffold_438 . biological_region 3477 3478 0.999 + . logic_name=eponine scaffold_438 . repeat_region 4098 9405 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_437 1 10761 scaffold_437 . biological_region 1786 1788 0.999 - . logic_name=eponine scaffold_437 . repeat_region 1975 6785 . ? . description=dust scaffold_437 . repeat_region 8539 8590 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_435 1 10765 scaffold_435 . repeat_region 4 2533 . + . description=GypsyPi-1c_I-int scaffold_435 . biological_region 2361 2365 0.999 - . logic_name=eponine scaffold_435 . repeat_region 2534 2963 . ? . description=dust scaffold_435 . repeat_region 2965 3364 . + . description=GypsyPi-1c_I-int scaffold_435 . biological_region 3626 3631 0.999 - . logic_name=eponine scaffold_435 . repeat_region 3855 4120 . ? . description=dust scaffold_435 . repeat_region 4151 4550 . + . description=GypsyPi-1c_I-int scaffold_435 . biological_region 4812 4817 0.999 - . logic_name=eponine scaffold_435 . biological_region 5011 5013 0.999 - . logic_name=eponine scaffold_435 . repeat_region 5270 5573 . + . description=GypsyPi-1c_LTR scaffold_435 . repeat_region 8677 8725 . ? . description=trf scaffold_435 . repeat_region 8932 8965 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_434 1 10802 scaffold_434 . repeat_region 1185 4258 . ? . description=dust scaffold_434 . biological_region 5149 5152 0.999 - . logic_name=eponine scaffold_434 . biological_region 5152 5155 0.999 + . logic_name=eponine scaffold_434 . biological_region 5273 5275 0.999 - . logic_name=eponine scaffold_434 . biological_region 5306 5312 0.999 + . logic_name=eponine scaffold_434 . biological_region 5323 5330 0.999 + . logic_name=eponine scaffold_434 . biological_region 5333 5337 0.999 - . logic_name=eponine scaffold_434 ensembl protein_coding_gene 4924 5417 . - . ID=Physo145052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4340001;logic_name=jgi_physo1_1 scaffold_434 ensembl transcript 4924 5417 . - . ID=Physo145052;Parent=Physo145052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_434 . exon 4924 5417 . - . ID=Physo145052.1;Parent=Physo145052;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_434 . CDS 4925 5416 . - 0 ID=Physo145052;Parent=Physo145052;rank=1 scaffold_434 . repeat_region 9531 9562 . ? . description=trf scaffold_434 ensembl protein_coding_gene 8424 9290 . + . ID=Physo145053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4340002;logic_name=jgi_physo1_1 scaffold_434 ensembl transcript 8424 9290 . + . ID=Physo145053;Parent=Physo145053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_434 . CDS 8424 9290 . + 0 ID=Physo145053;Parent=Physo145053;rank=1 scaffold_434 . exon 8424 9290 . + . ID=Physo145053.1;Parent=Physo145053;constitutive=1;rank=1 scaffold_434 ensembl protein_coding_gene 9851 10756 . - . ID=Physo145054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4340003;logic_name=jgi_physo1_1 scaffold_434 ensembl transcript 9851 10756 . - . ID=Physo145054;Parent=Physo145054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_434 . CDS 9851 10160 . - 0 ID=Physo145054;Parent=Physo145054;rank=2 scaffold_434 . exon 9851 10160 . - . ID=Physo145054.2;Parent=Physo145054;constitutive=1;ensembl_phase=2;rank=2 scaffold_434 . CDS 10239 10594 . - 0 ID=Physo145054;Parent=Physo145054;rank=1 scaffold_434 . exon 10239 10756 . - . ID=Physo145054.1;Parent=Physo145054;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_439 1 10815 scaffold_439 . biological_region 556 558 0.999 + . logic_name=eponine scaffold_439 . biological_region 1629 1631 0.999 + . logic_name=eponine scaffold_439 . repeat_region 3555 4656 . ? . description=dust scaffold_439 ensembl protein_coding_gene 1 830 . + . ID=Physo145057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4390001;logic_name=jgi_physo1_1 scaffold_439 ensembl transcript 1 830 . + . ID=Physo145057;Parent=Physo145057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_439 . exon 1 830 . + . ID=Physo145057.1;Parent=Physo145057;constitutive=1;ensembl_phase=-1;rank=1 scaffold_439 . CDS 51 830 . + 0 ID=Physo145057;Parent=Physo145057;rank=1 scaffold_439 ensembl protein_coding_gene 923 3154 . - . ID=Physo145058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4390002;logic_name=jgi_physo1_1 scaffold_439 ensembl transcript 923 3154 . - . ID=Physo145058;Parent=Physo145058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_439 . CDS 923 2034 . - 0 ID=Physo145058;Parent=Physo145058;rank=3 scaffold_439 . exon 923 2034 . - . ID=Physo145058.3;Parent=Physo145058;constitutive=1;ensembl_phase=1;rank=3 scaffold_439 . CDS 2150 2520 . - 0 ID=Physo145058;Parent=Physo145058;rank=2 scaffold_439 . exon 2150 2520 . - . ID=Physo145058.2;Parent=Physo145058;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_439 . CDS 2583 3154 . - 0 ID=Physo145058;Parent=Physo145058;rank=1 scaffold_439 . exon 2583 3154 . - . ID=Physo145058.1;Parent=Physo145058;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_439 ensembl protein_coding_gene 4703 9458 . - . ID=Physo145059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4390003;logic_name=jgi_physo1_1 scaffold_439 ensembl transcript 4703 9458 . - . ID=Physo145059;Parent=Physo145059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_439 . CDS 4703 6328 . - 0 ID=Physo145059;Parent=Physo145059;rank=1 scaffold_439 . exon 4703 6342 . - . ID=Physo145059.2;Parent=Physo145059;constitutive=1;ensembl_phase=-1;rank=2 scaffold_439 . repeat_region 6828 6870 . ? . description=trf scaffold_439 . repeat_region 7443 7479 . ? . description=trf scaffold_439 . exon 9297 9458 . - . ID=Physo145059.1;Parent=Physo145059;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_436 1 10838 scaffold_436 . repeat_region 60 110 . ? . description=trf scaffold_436 . repeat_region 60 112 . ? . description=trf scaffold_436 . repeat_region 173 210 . ? . description=trf scaffold_436 . repeat_region 1466 1477 . ? . description=dust scaffold_436 . repeat_region 2773 4392 . ? . description=dust scaffold_436 ensembl protein_coding_gene 2510 5945 . + . ID=Physo145055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4360001;logic_name=jgi_physo1_1 scaffold_436 ensembl transcript 2510 5945 . + . ID=Physo145055;Parent=Physo145055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_436 . CDS 2510 2746 . + 0 ID=Physo145055;Parent=Physo145055;rank=1 scaffold_436 . exon 2510 2746 . + . ID=Physo145055.1;Parent=Physo145055;constitutive=1;rank=1 scaffold_436 . CDS 4431 5194 . + 0 ID=Physo145055;Parent=Physo145055;rank=2 scaffold_436 . exon 4431 5194 . + . ID=Physo145055.2;Parent=Physo145055;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_436 . CDS 5227 5871 . + 0 ID=Physo145055;Parent=Physo145055;rank=3 scaffold_436 . exon 5227 5871 . + . ID=Physo145055.3;Parent=Physo145055;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_436 . CDS 5909 5945 . + 0 ID=Physo145055;Parent=Physo145055;rank=4 scaffold_436 . biological_region 5444 5444 0.999 - . logic_name=eponine scaffold_436 . biological_region 7578 7581 0.999 - . logic_name=eponine scaffold_436 . biological_region 9992 9994 0.999 + . logic_name=eponine scaffold_436 ensembl protein_coding_gene 6747 7157 . + . ID=Physo109698;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4360001;logic_name=jgi_physo1_1 scaffold_436 ensembl transcript 6747 7157 . + . ID=Physo109698;Parent=Physo109698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_436 . CDS 6747 7157 . + 0 ID=Physo109698;Parent=Physo109698;rank=1 scaffold_436 . exon 6747 7157 . + . ID=Physo109698.1;Parent=Physo109698;constitutive=1;rank=1 scaffold_436 . exon 5909 5945 . + . ID=Physo145055.4;Parent=Physo145055;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_433 1 10860 scaffold_433 . repeat_region 1779 1786 . ? . description=dust scaffold_433 . repeat_region 3361 3501 . + . description=(CTG)n scaffold_433 . repeat_region 3368 3454 . ? . description=dust scaffold_433 . repeat_region 3406 3435 . ? . description=trf scaffold_433 . biological_region 3656 3660 0.999 + . logic_name=eponine scaffold_433 . repeat_region 3778 3797 . ? . description=trf scaffold_433 . biological_region 4665 4667 0.999 - . logic_name=eponine scaffold_433 ensembl protein_coding_gene 2562 4667 . - . ID=Physo145049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4330001;logic_name=jgi_physo1_1 scaffold_433 ensembl transcript 2562 4667 . - . ID=Physo145049;Parent=Physo145049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_433 . exon 2562 4245 . - . ID=Physo145049.2;Parent=Physo145049;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_433 . CDS 2734 4245 . - 0 ID=Physo145049;Parent=Physo145049;rank=2 scaffold_433 . CDS 4266 4667 . - 0 ID=Physo145049;Parent=Physo145049;rank=1 scaffold_433 . exon 4266 4667 . - . ID=Physo145049.1;Parent=Physo145049;constitutive=1;rank=1 scaffold_433 ensembl protein_coding_gene 7896 8657 . + . ID=Physo125846;biotype=protein_coding;external_name=estExt_Genewise1.C_4330003;logic_name=jgi_physo1_1 scaffold_433 ensembl transcript 7896 8657 . + . ID=Physo125846;Parent=Physo125846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_433 . exon 7896 8657 . + . ID=Physo125846.1;Parent=Physo125846;constitutive=1;ensembl_phase=-1;rank=1 scaffold_433 . CDS 8064 8657 . + 0 ID=Physo125846;Parent=Physo125846;rank=1 scaffold_433 ensembl protein_coding_gene 8986 10844 . - . ID=Physo145051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4330003;logic_name=jgi_physo1_1 scaffold_433 ensembl transcript 8986 10844 . - . ID=Physo145051;Parent=Physo145051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_433 . exon 8986 9316 . - . ID=Physo145051.4;Parent=Physo145051;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_433 . CDS 9200 9316 . - 0 ID=Physo145051;Parent=Physo145051;rank=4 scaffold_433 . CDS 9411 9705 . - 0 ID=Physo145051;Parent=Physo145051;rank=3 scaffold_433 . exon 9411 9705 . - . ID=Physo145051.3;Parent=Physo145051;constitutive=1;ensembl_phase=2;rank=3 scaffold_433 . CDS 10243 10729 . - 0 ID=Physo145051;Parent=Physo145051;rank=2 scaffold_433 . exon 10243 10729 . - . ID=Physo145051.2;Parent=Physo145051;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_433 . CDS 10790 10844 . - 0 ID=Physo145051;Parent=Physo145051;rank=1 scaffold_433 . exon 10790 10844 . - . ID=Physo145051.1;Parent=Physo145051;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_430 1 10888 scaffold_430 . repeat_region 519 751 . + . description=Polinton-1_PI scaffold_430 . repeat_region 1574 2464 . ? . description=dust scaffold_430 . repeat_region 4803 4966 . + . description=Polinton-1_PI scaffold_430 . repeat_region 5028 5042 . ? . description=dust scaffold_430 . repeat_region 5114 5346 . + . description=Polinton-1_PI scaffold_430 ensembl protein_coding_gene 571 918 . + . ID=Physo125838;biotype=protein_coding;external_name=estExt_Genewise1.C_4300005;logic_name=jgi_physo1_1 scaffold_430 ensembl transcript 571 918 . + . ID=Physo125838;Parent=Physo125838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_430 . exon 571 780 . + . ID=Physo125838.1;Parent=Physo125838;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_430 . CDS 587 780 . + 0 ID=Physo125838;Parent=Physo125838;rank=1 scaffold_430 . CDS 899 917 . + 0 ID=Physo125838;Parent=Physo125838;rank=2 scaffold_430 . exon 899 918 . + . ID=Physo125838.2;Parent=Physo125838;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_430 ensembl protein_coding_gene 3049 5579 . + . ID=Physo145046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4300002;logic_name=jgi_physo1_1 scaffold_430 ensembl transcript 3049 5579 . + . ID=Physo145046;Parent=Physo145046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_430 . CDS 3049 3077 . + 0 ID=Physo145046;Parent=Physo145046;rank=1 scaffold_430 . exon 3049 3077 . + . ID=Physo145046.1;Parent=Physo145046;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_430 . CDS 3268 4662 . + 0 ID=Physo145046;Parent=Physo145046;rank=2 scaffold_430 . exon 3268 4662 . + . ID=Physo145046.2;Parent=Physo145046;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_430 . CDS 4883 4916 . + 0 ID=Physo145046;Parent=Physo145046;rank=3 scaffold_430 . exon 4883 4916 . + . ID=Physo145046.3;Parent=Physo145046;constitutive=1;ensembl_phase=2;rank=3 scaffold_430 . CDS 5161 5502 . + 0 ID=Physo145046;Parent=Physo145046;rank=4 scaffold_430 . exon 5161 5502 . + . ID=Physo145046.4;Parent=Physo145046;constitutive=1;rank=4 scaffold_430 . CDS 5577 5579 . + 0 ID=Physo145046;Parent=Physo145046;rank=5 scaffold_430 ensembl protein_coding_gene 8173 8523 . + . ID=Physo125834;biotype=protein_coding;external_name=estExt_Genewise1.C_4300001;logic_name=jgi_physo1_1 scaffold_430 ensembl transcript 8173 8523 . + . ID=Physo125834;Parent=Physo125834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_430 . exon 8173 8368 . + . ID=Physo125834.1;Parent=Physo125834;constitutive=1;ensembl_phase=-1;rank=1 scaffold_430 . CDS 8174 8368 . + 0 ID=Physo125834;Parent=Physo125834;rank=1 scaffold_430 . CDS 8504 8521 . + 0 ID=Physo125834;Parent=Physo125834;rank=2 scaffold_430 . exon 8504 8523 . + . ID=Physo125834.2;Parent=Physo125834;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_430 ensembl protein_coding_gene 7317 7619 . + . ID=Physo125835;biotype=protein_coding;external_name=estExt_Genewise1.C_4300002;logic_name=jgi_physo1_1 scaffold_430 ensembl transcript 7317 7619 . + . ID=Physo125835;Parent=Physo125835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_430 . exon 7317 7619 . + . ID=Physo125835.1;Parent=Physo125835;constitutive=1;ensembl_phase=-1;rank=1 scaffold_430 . CDS 7380 7619 . + 0 ID=Physo125835;Parent=Physo125835;rank=1 scaffold_430 . exon 5577 5579 . + . ID=Physo145046.5;Parent=Physo145046;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_429 1 10901 scaffold_429 . repeat_region 2518 2538 . ? . description=trf scaffold_429 . biological_region 5063 5063 0.999 - . logic_name=eponine scaffold_429 . biological_region 5174 5175 0.999 + . logic_name=eponine scaffold_429 ensembl protein_coding_gene 1891 5239 . - . ID=Physo145042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4290001;logic_name=jgi_physo1_1 scaffold_429 ensembl transcript 1891 5239 . - . ID=Physo145042;Parent=Physo145042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_429 . CDS 1891 2008 . - 0 ID=Physo145042;Parent=Physo145042;rank=4 scaffold_429 . exon 1891 2008 . - . ID=Physo145042.4;Parent=Physo145042;constitutive=1;ensembl_phase=2;rank=4 scaffold_429 . CDS 2085 3594 . - 0 ID=Physo145042;Parent=Physo145042;rank=3 scaffold_429 . exon 2085 3594 . - . ID=Physo145042.3;Parent=Physo145042;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_429 . CDS 3685 5133 . - 0 ID=Physo145042;Parent=Physo145042;rank=2 scaffold_429 . exon 3685 5133 . - . ID=Physo145042.2;Parent=Physo145042;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_429 . CDS 5206 5239 . - 0 ID=Physo145042;Parent=Physo145042;rank=1 scaffold_429 . exon 5206 5239 . - . ID=Physo145042.1;Parent=Physo145042;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_429 ensembl protein_coding_gene 5413 6831 . + . ID=Physo145043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4290002;logic_name=jgi_physo1_1 scaffold_429 ensembl transcript 5413 6831 . + . ID=Physo145043;Parent=Physo145043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_429 . CDS 5413 6831 . + 0 ID=Physo145043;Parent=Physo145043;rank=1 scaffold_429 . exon 5413 6831 . + . ID=Physo145043.1;Parent=Physo145043;constitutive=1;rank=1 scaffold_429 . repeat_region 5742 5763 . ? . description=dust scaffold_429 . repeat_region 6958 6966 . ? . description=dust scaffold_429 ensembl protein_coding_gene 7476 8630 . + . ID=Physo145044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4290003;logic_name=jgi_physo1_1 scaffold_429 ensembl transcript 7476 8630 . + . ID=Physo145044;Parent=Physo145044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_429 . CDS 7476 7698 . + 0 ID=Physo145044;Parent=Physo145044;rank=1 scaffold_429 . exon 7476 7698 . + . ID=Physo145044.1;Parent=Physo145044;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_429 . CDS 7749 7916 . + 0 ID=Physo145044;Parent=Physo145044;rank=2 scaffold_429 . exon 7749 7916 . + . ID=Physo145044.2;Parent=Physo145044;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_429 . CDS 8036 8291 . + 0 ID=Physo145044;Parent=Physo145044;rank=3 scaffold_429 . exon 8036 8291 . + . ID=Physo145044.3;Parent=Physo145044;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_429 . CDS 8465 8630 . + 0 ID=Physo145044;Parent=Physo145044;rank=4 scaffold_429 . exon 8465 8630 . + . ID=Physo145044.4;Parent=Physo145044;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_428 1 10909 scaffold_428 . biological_region 298 300 0.999 + . logic_name=eponine scaffold_428 . biological_region 347 353 0.999 + . logic_name=eponine scaffold_428 . repeat_region 858 5834 . ? . description=dust scaffold_428 ensembl protein_coding_gene 258 497 . + . ID=Physo125830;biotype=protein_coding;external_name=estExt_Genewise1.C_4280006;logic_name=jgi_physo1_1 scaffold_428 ensembl transcript 258 497 . + . ID=Physo125830;Parent=Physo125830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_428 . CDS 258 497 . + 0 ID=Physo125830;Parent=Physo125830;rank=1 scaffold_428 . exon 258 497 . + . ID=Physo125830.1;Parent=Physo125830;constitutive=1;rank=1 scaffold_428 ensembl protein_coding_gene 6329 7078 . + . ID=Physo125825;biotype=protein_coding;external_name=estExt_Genewise1.C_4280001;logic_name=jgi_physo1_1 scaffold_428 ensembl transcript 6329 7078 . + . ID=Physo125825;Parent=Physo125825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_428 . exon 6329 7078 . + . ID=Physo125825.1;Parent=Physo125825;constitutive=1;ensembl_phase=-1;rank=1 scaffold_428 . CDS 6347 7078 . + 0 ID=Physo125825;Parent=Physo125825;rank=1 scaffold_428 ensembl protein_coding_gene 7211 8148 . + . ID=Physo125827;biotype=protein_coding;external_name=estExt_Genewise1.C_4280003;logic_name=jgi_physo1_1 scaffold_428 ensembl transcript 7211 8148 . + . ID=Physo125827;Parent=Physo125827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_428 . exon 7211 7339 . + . ID=Physo125827.1;Parent=Physo125827;constitutive=1;ensembl_phase=-1;rank=1 scaffold_428 . CDS 7313 7339 . + 0 ID=Physo125827;Parent=Physo125827;rank=1 scaffold_428 . CDS 7510 7792 . + 0 ID=Physo125827;Parent=Physo125827;rank=2 scaffold_428 . exon 7510 7792 . + . ID=Physo125827.2;Parent=Physo125827;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_428 . CDS 7874 8148 . + 0 ID=Physo125827;Parent=Physo125827;rank=3 scaffold_428 . exon 7874 8148 . + . ID=Physo125827.3;Parent=Physo125827;constitutive=1;ensembl_phase=1;rank=3 scaffold_428 ensembl protein_coding_gene 8346 8639 . + . ID=Physo125828;biotype=protein_coding;external_name=estExt_Genewise1.C_4280004;logic_name=jgi_physo1_1 scaffold_428 ensembl transcript 8346 8639 . + . ID=Physo125828;Parent=Physo125828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_428 . exon 8346 8639 . + . ID=Physo125828.1;Parent=Physo125828;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_428 . CDS 8387 8494 . + 0 ID=Physo125828;Parent=Physo125828;rank=1 scaffold_428 ensembl protein_coding_gene 9859 10248 . + . ID=Physo145041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4280001;logic_name=jgi_physo1_1 scaffold_428 ensembl transcript 9859 10248 . + . ID=Physo145041;Parent=Physo145041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_428 . exon 9859 10248 . + . ID=Physo145041.1;Parent=Physo145041;constitutive=1;ensembl_phase=-1;rank=1 scaffold_428 . CDS 9862 10248 . + 0 ID=Physo145041;Parent=Physo145041;rank=1 ##gff-version 3 ##sequence-region scaffold_432 1 10937 scaffold_432 . biological_region 130 131 0.999 + . logic_name=eponine scaffold_432 . biological_region 139 143 0.999 + . logic_name=eponine scaffold_432 . biological_region 175 181 0.999 + . logic_name=eponine scaffold_432 . biological_region 217 222 0.999 - . logic_name=eponine scaffold_432 . biological_region 227 233 0.999 - . logic_name=eponine scaffold_432 . biological_region 242 248 0.999 + . logic_name=eponine scaffold_432 . biological_region 271 274 0.999 + . logic_name=eponine scaffold_432 . biological_region 302 306 0.999 + . logic_name=eponine scaffold_432 . biological_region 302 306 0.999 - . logic_name=eponine scaffold_432 . repeat_region 1087 1185 . ? . description=trf scaffold_432 . biological_region 1125 1128 0.999 - . logic_name=eponine scaffold_432 . biological_region 1160 1165 0.999 - . logic_name=eponine scaffold_432 . biological_region 1177 1183 0.999 + . logic_name=eponine scaffold_432 . repeat_region 1421 1861 . + . description=GypsyPi-1c_I-int scaffold_432 . biological_region 1811 1817 0.999 - . logic_name=eponine scaffold_432 . biological_region 1833 1837 0.999 + . logic_name=eponine scaffold_432 . biological_region 1858 1868 0.999 - . logic_name=eponine scaffold_432 . biological_region 2101 2101 0.999 - . logic_name=eponine scaffold_432 . biological_region 2544 2548 0.999 + . logic_name=eponine scaffold_432 . biological_region 2795 2797 0.999 - . logic_name=eponine scaffold_432 . repeat_region 2896 2922 . ? . description=trf scaffold_432 . biological_region 3269 3278 0.999 + . logic_name=eponine scaffold_432 . biological_region 3363 3364 0.999 - . logic_name=eponine scaffold_432 . biological_region 3530 3536 0.999 - . logic_name=eponine scaffold_432 . repeat_region 5317 6828 . ? . description=dust scaffold_432 ensembl tRNA_gene 8523 8595 . + . ID=EPrPSOG00000000122;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_432 ensembl transcript 8523 8595 . + . ID=EPrPSOT00000000122;Parent=EPrPSOG00000000122;biotype=tRNA;logic_name=ncrna_eg scaffold_432 ensembl tRNA_gene 9640 9712 . + . ID=EPrPSOG00000000152;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_432 ensembl transcript 9640 9712 . + . ID=EPrPSOT00000000152;Parent=EPrPSOG00000000152;biotype=tRNA;logic_name=ncrna_eg scaffold_432 . exon 8523 8595 . + . ID=EPrPSOE00000000122;Parent=EPrPSOT00000000122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_432 . exon 9640 9712 . + . ID=EPrPSOE00000000152;Parent=EPrPSOT00000000152;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_454 1 10945 scaffold_454 . repeat_region 1009 1058 . ? . description=dust scaffold_454 . repeat_region 3019 3537 . ? . description=dust scaffold_454 . repeat_region 9937 10020 . ? . description=trf scaffold_454 . repeat_region 9937 10023 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_427 1 10967 scaffold_427 . repeat_region 3709 3718 . ? . description=dust scaffold_427 . repeat_region 4461 8635 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_426 1 10974 scaffold_426 . biological_region 1171 1172 0.999 - . logic_name=eponine scaffold_426 . repeat_region 3253 3279 . ? . description=trf scaffold_426 . biological_region 3530 3531 0.999 + . logic_name=eponine scaffold_426 . biological_region 3548 3552 0.999 + . logic_name=eponine scaffold_426 . biological_region 3574 3580 0.999 + . logic_name=eponine scaffold_426 . biological_region 3600 3603 0.999 - . logic_name=eponine scaffold_426 . biological_region 3623 3625 0.999 - . logic_name=eponine scaffold_426 . biological_region 3660 3661 0.999 + . logic_name=eponine scaffold_426 . repeat_region 6229 6247 . ? . description=dust scaffold_426 . repeat_region 7083 7103 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_424 1 11122 scaffold_424 . repeat_region 2275 2324 . ? . description=dust scaffold_424 . repeat_region 4551 4930 . ? . description=dust scaffold_424 ensembl protein_coding_gene 2607 3803 . + . ID=Physo125818;biotype=protein_coding;external_name=estExt_Genewise1.C_4240002;logic_name=jgi_physo1_1 scaffold_424 ensembl transcript 2607 3803 . + . ID=Physo125818;Parent=Physo125818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_424 . exon 2607 3803 . + . ID=Physo125818.1;Parent=Physo125818;constitutive=1;ensembl_phase=-1;rank=1 scaffold_424 . CDS 2685 3803 . + 0 ID=Physo125818;Parent=Physo125818;rank=1 scaffold_424 ensembl protein_coding_gene 65 753 . - . ID=Physo125823;biotype=protein_coding;external_name=estExt_Genewise1.C_4240007;logic_name=jgi_physo1_1 scaffold_424 ensembl transcript 65 753 . - . ID=Physo125823;Parent=Physo125823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_424 . CDS 65 433 . - 0 ID=Physo125823;Parent=Physo125823;rank=1 scaffold_424 . exon 65 753 . - . ID=Physo125823.1;Parent=Physo125823;constitutive=1;ensembl_phase=-1;rank=1 scaffold_424 ensembl protein_coding_gene 1417 1680 . - . ID=Physo125824;biotype=protein_coding;external_name=estExt_Genewise1.C_4240008;logic_name=jgi_physo1_1 scaffold_424 ensembl transcript 1417 1680 . - . ID=Physo125824;Parent=Physo125824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_424 . CDS 1417 1653 . - 0 ID=Physo125824;Parent=Physo125824;rank=1 scaffold_424 . exon 1417 1680 . - . ID=Physo125824.1;Parent=Physo125824;constitutive=1;ensembl_phase=-1;rank=1 scaffold_424 . repeat_region 9163 9213 . ? . description=trf scaffold_424 . repeat_region 9163 9215 . ? . description=trf scaffold_424 . repeat_region 9255 9285 . ? . description=trf scaffold_424 . repeat_region 9290 9327 . ? . description=trf scaffold_424 ensembl protein_coding_gene 9591 11018 . - . ID=Physo145040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4240001;logic_name=jgi_physo1_1 scaffold_424 ensembl transcript 9591 11018 . - . ID=Physo145040;Parent=Physo145040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_424 . exon 9591 10294 . - . ID=Physo145040.2;Parent=Physo145040;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_424 . CDS 9681 10294 . - 0 ID=Physo145040;Parent=Physo145040;rank=2 scaffold_424 . CDS 10496 11018 . - 0 ID=Physo145040;Parent=Physo145040;rank=1 scaffold_424 . exon 10496 11018 . - . ID=Physo145040.1;Parent=Physo145040;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_423 1 11148 scaffold_423 . repeat_region 1116 1165 . ? . description=dust scaffold_423 . repeat_region 2255 2323 . ? . description=trf scaffold_423 . repeat_region 2562 2600 . ? . description=trf scaffold_423 . repeat_region 2828 2835 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_422 1 11189 scaffold_422 . repeat_region 50 1715 . + . description=Polinton-1_PI scaffold_422 . repeat_region 1716 2939 . ? . description=dust scaffold_422 . repeat_region 3883 3932 . ? . description=dust scaffold_422 . repeat_region 5179 5677 . ? . description=dust scaffold_422 ensembl protein_coding_gene 120 470 . + . ID=Physo125816;biotype=protein_coding;external_name=estExt_Genewise1.C_4220002;logic_name=jgi_physo1_1 scaffold_422 ensembl transcript 120 470 . + . ID=Physo125816;Parent=Physo125816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_422 . exon 120 332 . + . ID=Physo125816.1;Parent=Physo125816;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_422 . CDS 136 332 . + 0 ID=Physo125816;Parent=Physo125816;rank=1 scaffold_422 . CDS 451 469 . + 0 ID=Physo125816;Parent=Physo125816;rank=2 scaffold_422 . exon 451 470 . + . ID=Physo125816.2;Parent=Physo125816;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_422 ensembl protein_coding_gene 10410 10761 . + . ID=Physo125815;biotype=protein_coding;external_name=estExt_Genewise1.C_4220001;logic_name=jgi_physo1_1 scaffold_422 ensembl transcript 10410 10761 . + . ID=Physo125815;Parent=Physo125815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_422 . exon 10410 10528 . + . ID=Physo125815.1;Parent=Physo125815;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_422 . CDS 10426 10528 . + 0 ID=Physo125815;Parent=Physo125815;rank=1 scaffold_422 . CDS 10577 10761 . + 0 ID=Physo125815;Parent=Physo125815;rank=2 scaffold_422 . exon 10577 10761 . + . ID=Physo125815.2;Parent=Physo125815;constitutive=1;ensembl_phase=1;rank=2 scaffold_422 ensembl protein_coding_gene 5826 6324 . + . ID=Physo145038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4220001;logic_name=jgi_physo1_1 scaffold_422 ensembl transcript 5826 6324 . + . ID=Physo145038;Parent=Physo145038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_422 . CDS 5826 5843 . + 0 ID=Physo145038;Parent=Physo145038;rank=1 scaffold_422 . exon 5826 5843 . + . ID=Physo145038.1;Parent=Physo145038;constitutive=1;rank=1 scaffold_422 . CDS 5920 6324 . + 0 ID=Physo145038;Parent=Physo145038;rank=2 scaffold_422 . exon 5920 6324 . + . ID=Physo145038.2;Parent=Physo145038;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_418 1 11226 scaffold_418 . biological_region 1973 1978 0.999 + . logic_name=eponine scaffold_418 . biological_region 3959 3962 0.999 + . logic_name=eponine scaffold_418 . repeat_region 5441 10478 . ? . description=dust scaffold_418 ensembl protein_coding_gene 2377 3311 . + . ID=Physo109697;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4180001;logic_name=jgi_physo1_1 scaffold_418 ensembl transcript 2377 3311 . + . ID=Physo109697;Parent=Physo109697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_418 . exon 2377 3311 . + . ID=Physo109697.1;Parent=Physo109697;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_418 . CDS 2396 3145 . + 0 ID=Physo109697;Parent=Physo109697;rank=1 scaffold_418 ensembl protein_coding_gene 1 517 . + . ID=Physo145032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4180001;logic_name=jgi_physo1_1 scaffold_418 ensembl transcript 1 517 . + . ID=Physo145032;Parent=Physo145032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_418 . exon 1 517 . + . ID=Physo145032.1;Parent=Physo145032;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_418 . CDS 16 516 . + 0 ID=Physo145032;Parent=Physo145032;rank=1 scaffold_418 ensembl protein_coding_gene 3489 4460 . + . ID=Physo145034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4180003;logic_name=jgi_physo1_1 scaffold_418 ensembl transcript 3489 4460 . + . ID=Physo145034;Parent=Physo145034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_418 . exon 3489 4460 . + . ID=Physo145034.1;Parent=Physo145034;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_418 . CDS 3529 4323 . + 0 ID=Physo145034;Parent=Physo145034;rank=1 scaffold_418 ensembl protein_coding_gene 4732 10974 . + . ID=Physo145035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4180004;logic_name=jgi_physo1_1 scaffold_418 ensembl transcript 4732 10974 . + . ID=Physo145035;Parent=Physo145035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_418 . CDS 4732 5429 . + 0 ID=Physo145035;Parent=Physo145035;rank=1 scaffold_418 . exon 4732 5429 . + . ID=Physo145035.1;Parent=Physo145035;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_418 . CDS 10762 10804 . + 0 ID=Physo145035;Parent=Physo145035;rank=2 scaffold_418 . CDS 10870 10974 . + 0 ID=Physo145035;Parent=Physo145035;rank=3 scaffold_418 . exon 10762 10804 . + . ID=Physo145035.2;Parent=Physo145035;constitutive=1;ensembl_phase=2;rank=2 scaffold_418 . exon 10870 10974 . + . ID=Physo145035.3;Parent=Physo145035;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_419 1 11338 scaffold_419 . biological_region 181 187 0.999 - . logic_name=eponine scaffold_419 . biological_region 1057 1063 0.999 + . logic_name=eponine scaffold_419 . biological_region 1221 1228 0.999 + . logic_name=eponine scaffold_419 . biological_region 1429 1435 0.999 - . logic_name=eponine scaffold_419 . biological_region 1485 1491 0.999 + . logic_name=eponine scaffold_419 . repeat_region 1615 1636 . ? . description=dust scaffold_419 . repeat_region 1615 1636 . ? . description=trf scaffold_419 . biological_region 1656 1659 0.999 - . logic_name=eponine scaffold_419 . biological_region 1719 1722 0.999 - . logic_name=eponine scaffold_419 . biological_region 2225 2225 0.999 + . logic_name=eponine scaffold_419 . biological_region 2468 2476 0.999 + . logic_name=eponine scaffold_419 . biological_region 2500 2504 0.999 + . logic_name=eponine scaffold_419 . biological_region 2502 2505 0.999 - . logic_name=eponine scaffold_419 . repeat_region 2645 2678 . ? . description=dust scaffold_419 . repeat_region 2645 2678 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_415 1 11377 scaffold_415 . repeat_region 1011 1094 . ? . description=trf scaffold_415 . repeat_region 1082 1132 . ? . description=trf scaffold_415 . repeat_region 1251 7068 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_414 1 11409 scaffold_414 . repeat_region 240 402 . ? . description=trf scaffold_414 . biological_region 1717 1718 0.999 - . logic_name=eponine scaffold_414 . repeat_region 2770 2777 . ? . description=dust scaffold_414 . repeat_region 4226 4243 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_420 1 11409 scaffold_420 . repeat_region 1431 2727 . ? . description=dust scaffold_420 . repeat_region 4424 9816 . ? . description=dust scaffold_420 . repeat_region 9851 9895 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_398 1 11414 scaffold_398 . biological_region 595 599 0.999 + . logic_name=eponine scaffold_398 . biological_region 4152 4156 0.999 + . logic_name=eponine scaffold_398 . repeat_region 4160 4259 . ? . description=trf scaffold_398 . biological_region 4178 4183 0.999 + . logic_name=eponine scaffold_398 . repeat_region 4181 4221 . ? . description=trf scaffold_398 . repeat_region 4206 4242 . ? . description=trf scaffold_398 . repeat_region 4208 4277 . ? . description=trf scaffold_398 . repeat_region 5192 5199 . ? . description=dust scaffold_398 ensembl protein_coding_gene 1227 2671 . + . ID=Physo145024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3980001;logic_name=jgi_physo1_1 scaffold_398 ensembl transcript 1227 2671 . + . ID=Physo145024;Parent=Physo145024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_398 . exon 1227 2531 . + . ID=Physo145024.1;Parent=Physo145024;constitutive=1;ensembl_phase=-1;rank=1 scaffold_398 . CDS 1260 2531 . + 0 ID=Physo145024;Parent=Physo145024;rank=1 scaffold_398 . CDS 2627 2671 . + 0 ID=Physo145024;Parent=Physo145024;rank=2 scaffold_398 . exon 2627 2671 . + . ID=Physo145024.2;Parent=Physo145024;constitutive=1;rank=2 scaffold_398 . repeat_region 10076 10657 . - . description=Gypsy-1-I_PI-int scaffold_398 ensembl protein_coding_gene 9495 10790 . - . ID=Physo125800;biotype=protein_coding;external_name=estExt_Genewise1.C_3980001;logic_name=jgi_physo1_1 scaffold_398 ensembl transcript 9495 10790 . - . ID=Physo125800;Parent=Physo125800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_398 . exon 9495 10790 . - . ID=Physo125800.1;Parent=Physo125800;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_398 . CDS 10374 10721 . - 0 ID=Physo125800;Parent=Physo125800;rank=1 scaffold_398 ensembl protein_coding_gene 6643 7667 . + . ID=Physo145025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3980002;logic_name=jgi_physo1_1 scaffold_398 ensembl transcript 6643 7667 . + . ID=Physo145025;Parent=Physo145025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_398 . CDS 6643 6679 . + 0 ID=Physo145025;Parent=Physo145025;rank=1 scaffold_398 . exon 6643 6679 . + . ID=Physo145025.1;Parent=Physo145025;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_398 . CDS 6886 7667 . + 0 ID=Physo145025;Parent=Physo145025;rank=2 scaffold_398 . exon 6886 7667 . + . ID=Physo145025.2;Parent=Physo145025;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_425 1 11446 scaffold_425 . repeat_region 1600 1641 . ? . description=trf scaffold_425 . repeat_region 1793 2408 . ? . description=dust scaffold_425 . repeat_region 4144 7224 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_431 1 11456 scaffold_431 . repeat_region 853 1158 . + . description=GypsyPi-1c_LTR scaffold_431 . repeat_region 1846 2799 . ? . description=dust scaffold_431 . biological_region 3794 3800 0.999 + . logic_name=eponine scaffold_431 . repeat_region 4132 6868 . ? . description=dust scaffold_431 . repeat_region 7018 7777 . + . description=GypsyPi-1c_I-int scaffold_431 ensembl protein_coding_gene 7270 8089 . + . ID=Physo145047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4310001;logic_name=jgi_physo1_1 scaffold_431 ensembl transcript 7270 8089 . + . ID=Physo145047;Parent=Physo145047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_431 . CDS 7270 8042 . + 0 ID=Physo145047;Parent=Physo145047;rank=1 scaffold_431 . exon 7270 8042 . + . ID=Physo145047.1;Parent=Physo145047;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_431 . CDS 8083 8089 . + 0 ID=Physo145047;Parent=Physo145047;rank=2 scaffold_431 . exon 8083 8089 . + . ID=Physo145047.2;Parent=Physo145047;constitutive=1;ensembl_phase=2;rank=2 scaffold_431 ensembl protein_coding_gene 10852 11397 . - . ID=Physo145048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4310002;logic_name=jgi_physo1_1 scaffold_431 ensembl transcript 10852 11397 . - . ID=Physo145048;Parent=Physo145048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_431 . CDS 10852 11397 . - 0 ID=Physo145048;Parent=Physo145048;rank=1 scaffold_431 . exon 10852 11397 . - . ID=Physo145048.1;Parent=Physo145048;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_413 1 11480 scaffold_413 . biological_region 242 244 0.999 - . logic_name=eponine scaffold_413 . biological_region 299 302 0.999 - . logic_name=eponine scaffold_413 . biological_region 1503 1506 0.999 + . logic_name=eponine scaffold_413 . biological_region 1595 1596 0.999 - . logic_name=eponine scaffold_413 . repeat_region 2184 2904 . ? . description=dust scaffold_413 . repeat_region 3389 3439 . ? . description=trf scaffold_413 . repeat_region 4394 9885 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_417 1 11496 scaffold_417 . repeat_region 134 1404 . - . description=Polinton-1_PI scaffold_417 . repeat_region 1501 1550 . ? . description=dust scaffold_417 . repeat_region 1672 1679 . ? . description=dust scaffold_417 . repeat_region 1701 2397 . - . description=Polinton-1_PI scaffold_417 . repeat_region 3234 3255 . ? . description=trf scaffold_417 . repeat_region 3750 3799 . ? . description=dust scaffold_417 . repeat_region 3800 4625 . - . description=Polinton-1_PI scaffold_417 . repeat_region 4626 6613 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_411 1 11547 scaffold_411 . repeat_region 2132 7284 . ? . description=dust scaffold_411 . biological_region 7545 7550 0.999 - . logic_name=eponine scaffold_411 . biological_region 7566 7569 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_412 1 11570 scaffold_412 . biological_region 258 265 0.999 - . logic_name=eponine scaffold_412 . biological_region 757 763 0.999 + . logic_name=eponine scaffold_412 . biological_region 1727 1731 0.999 + . logic_name=eponine scaffold_412 . repeat_region 4334 4383 . ? . description=dust scaffold_412 . repeat_region 4424 4787 . + . description=Gypsy-1-I_PI-int scaffold_412 . repeat_region 5624 5633 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_410 1 11582 scaffold_410 . biological_region 781 784 0.999 + . logic_name=eponine scaffold_410 . repeat_region 926 5710 . ? . description=dust scaffold_410 . repeat_region 10070 10149 . ? . description=trf scaffold_410 ensembl protein_coding_gene 7274 8536 . + . ID=Physo125808;biotype=protein_coding;external_name=estExt_Genewise1.C_4100001;logic_name=jgi_physo1_1 scaffold_410 ensembl transcript 7274 8536 . + . ID=Physo125808;Parent=Physo125808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_410 . exon 7274 8182 . + . ID=Physo125808.1;Parent=Physo125808;constitutive=1;ensembl_phase=-1;rank=1 scaffold_410 . CDS 7451 8182 . + 0 ID=Physo125808;Parent=Physo125808;rank=1 scaffold_410 . CDS 8213 8536 . + 0 ID=Physo125808;Parent=Physo125808;rank=2 scaffold_410 . exon 8213 8536 . + . ID=Physo125808.2;Parent=Physo125808;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_391 1 11631 scaffold_391 . repeat_region 1028 1101 . + . description=GypsyPi-1c_LTR scaffold_391 . repeat_region 1106 2350 . ? . description=dust scaffold_391 . repeat_region 2353 2517 . ? . description=trf scaffold_391 . repeat_region 2353 5424 . + . description=GypsyPi-1c_I-int scaffold_391 . repeat_region 2496 2566 . ? . description=trf scaffold_391 . biological_region 5214 5218 0.999 - . logic_name=eponine scaffold_391 . repeat_region 5425 5883 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_408 1 11641 scaffold_408 . repeat_region 2129 2136 . ? . description=dust scaffold_408 . repeat_region 4642 4669 . ? . description=dust scaffold_408 . repeat_region 4642 4669 . ? . description=trf scaffold_408 . biological_region 7268 7269 0.999 + . logic_name=eponine scaffold_408 . biological_region 7469 7470 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_407 1 11643 scaffold_407 . repeat_region 4437 4502 . ? . description=trf scaffold_407 . repeat_region 4447 4502 . ? . description=trf scaffold_407 . repeat_region 5304 6889 . ? . description=dust scaffold_407 ensembl protein_coding_gene 1617 3348 . - . ID=Physo145031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4070001;logic_name=jgi_physo1_1 scaffold_407 ensembl transcript 1617 3348 . - . ID=Physo145031;Parent=Physo145031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_407 . CDS 1617 1623 . - 0 ID=Physo145031;Parent=Physo145031;rank=6 scaffold_407 . exon 1617 1623 . - . ID=Physo145031.6;Parent=Physo145031;constitutive=1;ensembl_phase=2;rank=6 scaffold_407 . CDS 1683 1966 . - 0 ID=Physo145031;Parent=Physo145031;rank=5 scaffold_407 . exon 1683 1966 . - . ID=Physo145031.5;Parent=Physo145031;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_407 . CDS 2098 2376 . - 0 ID=Physo145031;Parent=Physo145031;rank=4 scaffold_407 . exon 2098 2376 . - . ID=Physo145031.4;Parent=Physo145031;constitutive=1;rank=4 scaffold_407 . CDS 2459 2635 . - 0 ID=Physo145031;Parent=Physo145031;rank=3 scaffold_407 . exon 2459 2635 . - . ID=Physo145031.3;Parent=Physo145031;constitutive=1;rank=3 scaffold_407 . CDS 2791 3071 . - 0 ID=Physo145031;Parent=Physo145031;rank=2 scaffold_407 . exon 2791 3071 . - . ID=Physo145031.2;Parent=Physo145031;constitutive=1;ensembl_phase=1;rank=2 scaffold_407 . CDS 3099 3177 . - 0 ID=Physo145031;Parent=Physo145031;rank=1 scaffold_407 . exon 3099 3348 . - . ID=Physo145031.1;Parent=Physo145031;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_407 . biological_region 8360 8362 0.999 + . logic_name=eponine scaffold_407 . biological_region 8393 8401 0.999 + . logic_name=eponine scaffold_407 . biological_region 8491 8493 0.999 - . logic_name=eponine scaffold_407 . biological_region 9611 9613 0.999 + . logic_name=eponine scaffold_407 . biological_region 9770 9772 0.999 + . logic_name=eponine scaffold_407 . repeat_region 11506 11643 . + . description=(TAG)n ##gff-version 3 ##sequence-region scaffold_405 1 11716 scaffold_405 . repeat_region 1 667 . - . description=Polinton-1_PI scaffold_405 . repeat_region 885 2508 . - . description=Polinton-1_PI scaffold_405 . repeat_region 1287 1336 . ? . description=dust scaffold_405 . repeat_region 2511 5693 . ? . description=dust scaffold_405 ensembl protein_coding_gene 5728 6807 . + . ID=Physo109696;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_4050001;logic_name=jgi_physo1_1 scaffold_405 ensembl transcript 5728 6807 . + . ID=Physo109696;Parent=Physo109696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_405 . CDS 5728 6807 . + 0 ID=Physo109696;Parent=Physo109696;rank=1 scaffold_405 . exon 5728 6807 . + . ID=Physo109696.1;Parent=Physo109696;constitutive=1;rank=1 scaffold_405 . biological_region 7976 7978 0.999 + . logic_name=eponine scaffold_405 . biological_region 8025 8031 0.999 + . logic_name=eponine scaffold_405 . biological_region 8619 8622 0.999 + . logic_name=eponine scaffold_405 . biological_region 9369 9370 0.999 - . logic_name=eponine scaffold_405 . biological_region 9809 9811 0.999 + . logic_name=eponine scaffold_405 . biological_region 9843 9843 0.999 + . logic_name=eponine scaffold_405 . biological_region 9864 9867 0.999 - . logic_name=eponine scaffold_405 ensembl protein_coding_gene 7933 10018 . + . ID=Physo145029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4050002;logic_name=jgi_physo1_1 scaffold_405 ensembl transcript 7933 10018 . + . ID=Physo145029;Parent=Physo145029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_405 . CDS 7933 9957 . + 0 ID=Physo145029;Parent=Physo145029;rank=1 scaffold_405 . exon 7933 10018 . + . ID=Physo145029.1;Parent=Physo145029;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_405 ensembl protein_coding_gene 10498 11222 . + . ID=Physo145030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_4050003;logic_name=jgi_physo1_1 scaffold_405 ensembl transcript 10498 11222 . + . ID=Physo145030;Parent=Physo145030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_405 . CDS 10498 10834 . + 0 ID=Physo145030;Parent=Physo145030;rank=1 scaffold_405 . exon 10498 10834 . + . ID=Physo145030.1;Parent=Physo145030;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_405 . CDS 10897 11222 . + 0 ID=Physo145030;Parent=Physo145030;rank=2 scaffold_405 . exon 10897 11222 . + . ID=Physo145030.2;Parent=Physo145030;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_406 1 11725 scaffold_406 . repeat_region 2759 2778 . ? . description=trf scaffold_406 . repeat_region 4784 4834 . ? . description=trf scaffold_406 . biological_region 5348 5349 0.999 + . logic_name=eponine scaffold_406 . biological_region 5400 5407 0.999 + . logic_name=eponine scaffold_406 . repeat_region 5575 5641 . ? . description=trf scaffold_406 . repeat_region 5575 5641 . ? . description=trf scaffold_406 . biological_region 5697 5698 0.999 - . logic_name=eponine scaffold_406 . repeat_region 5746 5770 . ? . description=dust scaffold_406 . repeat_region 5746 5770 . ? . description=trf scaffold_406 ensembl snoRNA_gene 7229 7445 . - . ID=EPrPSOG00000000074;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_406 ensembl snoRNA 7229 7445 . - . ID=EPrPSOT00000000074;Parent=EPrPSOG00000000074;biotype=snoRNA;logic_name=ncrna_eg scaffold_406 . exon 7229 7445 . - . ID=EPrPSOE00000000074;Parent=EPrPSOT00000000074;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_403 1 11765 scaffold_403 . repeat_region 1503 2274 . ? . description=dust scaffold_403 . repeat_region 4010 4018 . ? . description=dust scaffold_403 . repeat_region 4656 8790 . ? . description=dust scaffold_403 . repeat_region 9210 9513 . - . description=GypsyPi-1c_LTR scaffold_403 . biological_region 9770 9773 0.999 + . logic_name=eponine scaffold_403 . biological_region 9966 9971 0.999 + . logic_name=eponine scaffold_403 . repeat_region 10137 10724 . - . description=GypsyPi-1c_I-int scaffold_403 . biological_region 10818 10822 0.999 + . logic_name=eponine scaffold_403 . repeat_region 11248 11681 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_416 1 11780 scaffold_416 . repeat_region 1 2547 . - . description=GypsyPi-1c_I-int scaffold_416 . repeat_region 1500 1598 . ? . description=trf scaffold_416 . repeat_region 1530 1600 . ? . description=trf scaffold_416 . repeat_region 1581 1749 . ? . description=trf scaffold_416 . repeat_region 2561 3238 . ? . description=dust scaffold_416 . repeat_region 3239 3825 . - . description=GypsyPi-1c_I-int scaffold_416 . biological_region 3304 3307 0.999 + . logic_name=eponine scaffold_416 . biological_region 3322 3326 0.999 - . logic_name=eponine scaffold_416 . repeat_region 3826 4129 . - . description=GypsyPi-1c_LTR scaffold_416 . repeat_region 4512 7299 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_402 1 11788 scaffold_402 . repeat_region 2894 2943 . ? . description=dust scaffold_402 . repeat_region 3957 4013 . ? . description=trf scaffold_402 . repeat_region 4393 4400 . ? . description=dust scaffold_402 . biological_region 8915 8915 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_400 1 11790 scaffold_400 . repeat_region 954 1068 . ? . description=dust scaffold_400 . biological_region 1690 1696 0.999 + . logic_name=eponine scaffold_400 . repeat_region 3718 3761 . ? . description=trf scaffold_400 . repeat_region 5583 10928 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_409 1 11809 scaffold_409 . repeat_region 2 1031 . - . description=Gypsy-2-I_PI-int scaffold_409 . repeat_region 1081 2383 . ? . description=dust scaffold_409 . repeat_region 3862 6560 . ? . description=dust scaffold_409 . biological_region 10631 10635 0.999 + . logic_name=eponine scaffold_409 . repeat_region 10805 11809 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_399 1 11835 scaffold_399 . biological_region 456 456 0.999 - . logic_name=eponine scaffold_399 . repeat_region 547 586 . ? . description=trf scaffold_399 . biological_region 804 806 0.999 - . logic_name=eponine scaffold_399 . biological_region 834 838 0.999 - . logic_name=eponine scaffold_399 . biological_region 891 891 0.999 + . logic_name=eponine scaffold_399 . biological_region 1055 1058 0.999 - . logic_name=eponine scaffold_399 . biological_region 1080 1085 0.999 + . logic_name=eponine scaffold_399 . biological_region 1139 1143 0.999 - . logic_name=eponine scaffold_399 . biological_region 1438 1444 0.999 + . logic_name=eponine scaffold_399 . biological_region 1863 1867 0.999 + . logic_name=eponine scaffold_399 . repeat_region 1871 1912 . ? . description=trf scaffold_399 . biological_region 1880 1885 0.999 - . logic_name=eponine scaffold_399 . biological_region 1964 1969 0.999 + . logic_name=eponine scaffold_399 . biological_region 2020 2025 0.999 - . logic_name=eponine scaffold_399 . repeat_region 2055 2117 . ? . description=trf scaffold_399 . repeat_region 4298 4322 . ? . description=trf scaffold_399 . repeat_region 4811 4832 . ? . description=dust scaffold_399 ensembl tRNA_gene 11003 11075 . + . ID=EPrPSOG00000000107;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_399 ensembl transcript 11003 11075 . + . ID=EPrPSOT00000000107;Parent=EPrPSOG00000000107;biotype=tRNA;logic_name=ncrna_eg scaffold_399 ensembl tRNA_gene 11414 11494 . + . ID=EPrPSOG00000000176;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_399 ensembl transcript 11414 11494 . + . ID=EPrPSOT00000000176;Parent=EPrPSOG00000000176;biotype=tRNA;logic_name=ncrna_eg scaffold_399 . exon 11003 11075 . + . ID=EPrPSOE00000000107;Parent=EPrPSOT00000000107;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_399 . exon 11414 11494 . + . ID=EPrPSOE00000000176;Parent=EPrPSOT00000000176;constitutive=1;rank=1 scaffold_399 ensembl protein_coding_gene 6288 6485 . + . ID=Physo125801;biotype=protein_coding;external_name=estExt_Genewise1.C_3990001;logic_name=jgi_physo1_1 scaffold_399 ensembl transcript 6288 6485 . + . ID=Physo125801;Parent=Physo125801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_399 . exon 6288 6485 . + . ID=Physo125801.1;Parent=Physo125801;constitutive=1;ensembl_phase=-1;rank=1 scaffold_399 . CDS 6303 6485 . + 0 ID=Physo125801;Parent=Physo125801;rank=1 scaffold_399 ensembl protein_coding_gene 8438 8719 . - . ID=Physo125802;biotype=protein_coding;external_name=estExt_Genewise1.C_3990002;logic_name=jgi_physo1_1 scaffold_399 ensembl transcript 8438 8719 . - . ID=Physo125802;Parent=Physo125802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_399 . CDS 8438 8686 . - 0 ID=Physo125802;Parent=Physo125802;rank=1 scaffold_399 . exon 8438 8719 . - . ID=Physo125802.1;Parent=Physo125802;constitutive=1;ensembl_phase=-1;rank=1 scaffold_399 ensembl protein_coding_gene 8856 9991 . - . ID=Physo145027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3990002;logic_name=jgi_physo1_1 scaffold_399 ensembl transcript 8856 9991 . - . ID=Physo145027;Parent=Physo145027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_399 . CDS 8856 9650 . - 0 ID=Physo145027;Parent=Physo145027;rank=2 scaffold_399 . exon 8856 9650 . - . ID=Physo145027.2;Parent=Physo145027;constitutive=1;rank=2 scaffold_399 . CDS 9758 9991 . - 0 ID=Physo145027;Parent=Physo145027;rank=1 scaffold_399 . exon 9758 9991 . - . ID=Physo145027.1;Parent=Physo145027;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_397 1 11898 scaffold_397 . repeat_region 6 13 . ? . description=dust scaffold_397 . repeat_region 3277 3287 . ? . description=dust scaffold_397 . repeat_region 4465 4543 . ? . description=trf scaffold_397 . repeat_region 5212 5310 . ? . description=trf scaffold_397 ensembl tRNA_gene 3292 3361 . + . ID=EPrPSOG00000000147;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_397 ensembl transcript 3292 3361 . + . ID=EPrPSOT00000000147;Parent=EPrPSOG00000000147;biotype=tRNA;logic_name=ncrna_eg scaffold_397 . exon 3292 3361 . + . ID=EPrPSOE00000000147;Parent=EPrPSOT00000000147;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_397 ensembl protein_coding_gene 5357 7489 . - . ID=Physo145023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3970001;logic_name=jgi_physo1_1 scaffold_397 ensembl transcript 5357 7489 . - . ID=Physo145023;Parent=Physo145023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_397 . CDS 5357 6834 . - 0 ID=Physo145023;Parent=Physo145023;rank=2 scaffold_397 . exon 5357 6834 . - . ID=Physo145023.2;Parent=Physo145023;constitutive=1;ensembl_phase=1;rank=2 scaffold_397 . CDS 7288 7489 . - 0 ID=Physo145023;Parent=Physo145023;rank=1 scaffold_397 . exon 7288 7489 . - . ID=Physo145023.1;Parent=Physo145023;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_393 1 11911 scaffold_393 . repeat_region 917 928 . ? . description=dust scaffold_393 . biological_region 958 967 0.999 + . logic_name=eponine scaffold_393 . biological_region 975 982 0.999 + . logic_name=eponine scaffold_393 . biological_region 1001 1003 0.999 + . logic_name=eponine scaffold_393 . biological_region 1069 1074 0.999 - . logic_name=eponine scaffold_393 . biological_region 1107 1118 0.999 - . logic_name=eponine scaffold_393 . repeat_region 1958 1966 . ? . description=dust scaffold_393 . repeat_region 2213 2262 . ? . description=dust scaffold_393 . repeat_region 3296 3345 . ? . description=dust scaffold_393 . repeat_region 3878 3897 . ? . description=trf scaffold_393 . repeat_region 4905 4954 . ? . description=dust scaffold_393 . repeat_region 5879 5898 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_404 1 11983 scaffold_404 . biological_region 847 854 0.999 - . logic_name=eponine scaffold_404 . biological_region 982 989 0.999 - . logic_name=eponine scaffold_404 . repeat_region 1857 1991 . - . description=GypsyPi-1c_I-int scaffold_404 . repeat_region 2401 2442 . ? . description=trf scaffold_404 . repeat_region 2493 5394 . - . description=GypsyPi-1c_I-int scaffold_404 . biological_region 3035 3035 0.999 - . logic_name=eponine scaffold_404 . biological_region 5501 5502 0.999 + . logic_name=eponine scaffold_404 . repeat_region 6347 6396 . ? . description=dust scaffold_404 . repeat_region 7835 7884 . ? . description=dust scaffold_404 . repeat_region 9127 9176 . ? . description=dust scaffold_404 . repeat_region 10791 10949 . ? . description=dust scaffold_404 . repeat_region 11171 11234 . ? . description=dust scaffold_404 . repeat_region 11304 11353 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_395 1 11993 scaffold_395 . repeat_region 2536 2588 . ? . description=trf scaffold_395 . biological_region 3491 3492 0.999 + . logic_name=eponine scaffold_395 . repeat_region 5240 6587 . ? . description=dust scaffold_395 ensembl protein_coding_gene 4 1581 . - . ID=Physo145019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3950001;logic_name=jgi_physo1_1 scaffold_395 ensembl transcript 4 1581 . - . ID=Physo145019;Parent=Physo145019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_395 . CDS 4 1581 . - 0 ID=Physo145019;Parent=Physo145019;rank=1 scaffold_395 . exon 4 1581 . - . ID=Physo145019.1;Parent=Physo145019;constitutive=1;rank=1 scaffold_395 ensembl protein_coding_gene 9923 11786 . - . ID=Physo145020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3950002;logic_name=jgi_physo1_1 scaffold_395 ensembl transcript 9923 11786 . - . ID=Physo145020;Parent=Physo145020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_395 . CDS 9923 10374 . - 0 ID=Physo145020;Parent=Physo145020;rank=3 scaffold_395 . exon 9923 10374 . - . ID=Physo145020.3;Parent=Physo145020;constitutive=1;ensembl_phase=1;rank=3 scaffold_395 . CDS 10810 11486 . - 0 ID=Physo145020;Parent=Physo145020;rank=2 scaffold_395 . exon 10810 11486 . - . ID=Physo145020.2;Parent=Physo145020;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_395 . CDS 11515 11786 . - 0 ID=Physo145020;Parent=Physo145020;rank=1 scaffold_395 . exon 11515 11786 . - . ID=Physo145020.1;Parent=Physo145020;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_376 1 12027 scaffold_376 . repeat_region 117 125 . ? . description=dust scaffold_376 . repeat_region 356 1994 . ? . description=dust scaffold_376 . repeat_region 2271 2295 . ? . description=trf scaffold_376 . biological_region 2366 2370 0.999 - . logic_name=eponine scaffold_376 . repeat_region 2871 2970 . ? . description=dust scaffold_376 . repeat_region 3050 3241 . ? . description=trf scaffold_376 . biological_region 5338 5339 0.999 + . logic_name=eponine scaffold_376 . biological_region 5505 5505 0.999 - . logic_name=eponine scaffold_376 ensembl protein_coding_gene 6659 8108 . - . ID=Physo144996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3760001;logic_name=jgi_physo1_1 scaffold_376 ensembl transcript 6659 8108 . - . ID=Physo144996;Parent=Physo144996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_376 . CDS 6659 6680 . - 0 ID=Physo144996;Parent=Physo144996;rank=5 scaffold_376 . exon 6659 6680 . - . ID=Physo144996.5;Parent=Physo144996;constitutive=1;ensembl_phase=2;rank=5 scaffold_376 . CDS 6966 6972 . - 0 ID=Physo144996;Parent=Physo144996;rank=4 scaffold_376 . exon 6966 6972 . - . ID=Physo144996.4;Parent=Physo144996;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_376 . CDS 7164 7441 . - 0 ID=Physo144996;Parent=Physo144996;rank=3 scaffold_376 . exon 7164 7441 . - . ID=Physo144996.3;Parent=Physo144996;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_376 . CDS 7482 7781 . - 0 ID=Physo144996;Parent=Physo144996;rank=2 scaffold_376 . exon 7482 7781 . - . ID=Physo144996.2;Parent=Physo144996;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_376 . CDS 7822 8108 . - 0 ID=Physo144996;Parent=Physo144996;rank=1 scaffold_376 . exon 7822 8108 . - . ID=Physo144996.1;Parent=Physo144996;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_394 1 12083 scaffold_394 . repeat_region 489 1380 . - . description=GypsyPi-1c_I-int scaffold_394 . repeat_region 1391 2845 . ? . description=dust scaffold_394 . biological_region 3277 3282 0.999 - . logic_name=eponine scaffold_394 . repeat_region 3631 4276 . ? . description=dust scaffold_394 . biological_region 4658 4659 0.999 + . logic_name=eponine scaffold_394 . biological_region 4704 4708 0.999 + . logic_name=eponine scaffold_394 . biological_region 4804 4806 0.999 - . logic_name=eponine scaffold_394 . biological_region 4830 4835 0.999 - . logic_name=eponine scaffold_394 . biological_region 4860 4864 0.999 + . logic_name=eponine scaffold_394 . biological_region 4884 4890 0.999 + . logic_name=eponine scaffold_394 . biological_region 5077 5083 0.999 + . logic_name=eponine scaffold_394 . repeat_region 5285 5551 . ? . description=dust scaffold_394 ensembl protein_coding_gene 92 3323 . - . ID=Physo145016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3940001;logic_name=jgi_physo1_1 scaffold_394 ensembl transcript 92 3323 . - . ID=Physo145016;Parent=Physo145016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_394 . exon 92 1359 . - . ID=Physo145016.2;Parent=Physo145016;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_394 . CDS 94 1359 . - 0 ID=Physo145016;Parent=Physo145016;rank=2 scaffold_394 . CDS 2958 3323 . - 0 ID=Physo145016;Parent=Physo145016;rank=1 scaffold_394 . exon 2958 3323 . - . ID=Physo145016.1;Parent=Physo145016;constitutive=1;rank=1 scaffold_394 ensembl protein_coding_gene 5771 7520 . + . ID=Physo145017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3940002;logic_name=jgi_physo1_1 scaffold_394 ensembl transcript 5771 7520 . + . ID=Physo145017;Parent=Physo145017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_394 . CDS 5771 6145 . + 0 ID=Physo145017;Parent=Physo145017;rank=1 scaffold_394 . exon 5771 6145 . + . ID=Physo145017.1;Parent=Physo145017;constitutive=1;rank=1 scaffold_394 . CDS 6171 6240 . + 0 ID=Physo145017;Parent=Physo145017;rank=2 scaffold_394 . CDS 6317 7113 . + 0 ID=Physo145017;Parent=Physo145017;rank=3 scaffold_394 . CDS 7251 7520 . + 0 ID=Physo145017;Parent=Physo145017;rank=4 scaffold_394 . repeat_region 11295 11327 . ? . description=trf scaffold_394 . repeat_region 11316 11360 . ? . description=trf scaffold_394 . repeat_region 11683 11729 . ? . description=trf scaffold_394 . exon 6171 6240 . + . ID=Physo145017.2;Parent=Physo145017;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_394 . exon 6317 7113 . + . ID=Physo145017.3;Parent=Physo145017;constitutive=1;ensembl_phase=1;rank=3 scaffold_394 . exon 7251 7520 . + . ID=Physo145017.4;Parent=Physo145017;constitutive=1;rank=4 scaffold_394 ensembl protein_coding_gene 10641 11211 . + . ID=Physo145018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3940003;logic_name=jgi_physo1_1 scaffold_394 ensembl transcript 10641 11211 . + . ID=Physo145018;Parent=Physo145018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_394 . CDS 10641 11207 . + 0 ID=Physo145018;Parent=Physo145018;rank=1 scaffold_394 . exon 10641 11211 . + . ID=Physo145018.1;Parent=Physo145018;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_396 1 12100 scaffold_396 . repeat_region 1964 2038 . ? . description=trf scaffold_396 . repeat_region 3273 3396 . ? . description=dust scaffold_396 ensembl protein_coding_gene 4100 5381 . + . ID=Physo109695;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_3960001;logic_name=jgi_physo1_1 scaffold_396 ensembl transcript 4100 5381 . + . ID=Physo109695;Parent=Physo109695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_396 . CDS 4100 4158 . + 0 ID=Physo109695;Parent=Physo109695;rank=1 scaffold_396 . exon 4100 4158 . + . ID=Physo109695.1;Parent=Physo109695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_396 . CDS 4212 4449 . + 0 ID=Physo109695;Parent=Physo109695;rank=2 scaffold_396 . exon 4212 4449 . + . ID=Physo109695.2;Parent=Physo109695;constitutive=1;ensembl_phase=2;rank=2 scaffold_396 . CDS 4565 5149 . + 0 ID=Physo109695;Parent=Physo109695;rank=3 scaffold_396 . exon 4565 5149 . + . ID=Physo109695.3;Parent=Physo109695;constitutive=1;rank=3 scaffold_396 . CDS 5184 5188 . + 0 ID=Physo109695;Parent=Physo109695;rank=4 scaffold_396 . exon 5184 5188 . + . ID=Physo109695.4;Parent=Physo109695;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_396 . CDS 5210 5381 . + 0 ID=Physo109695;Parent=Physo109695;rank=5 scaffold_396 . exon 5210 5381 . + . ID=Physo109695.5;Parent=Physo109695;constitutive=1;ensembl_phase=2;rank=5 scaffold_396 ensembl protein_coding_gene 5904 6792 . + . ID=Physo145022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3960002;logic_name=jgi_physo1_1 scaffold_396 ensembl transcript 5904 6792 . + . ID=Physo145022;Parent=Physo145022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_396 . CDS 5904 6009 . + 0 ID=Physo145022;Parent=Physo145022;rank=1 scaffold_396 . exon 5904 6009 . + . ID=Physo145022.1;Parent=Physo145022;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_396 . CDS 6099 6212 . + 0 ID=Physo145022;Parent=Physo145022;rank=2 scaffold_396 . CDS 6491 6792 . + 0 ID=Physo145022;Parent=Physo145022;rank=3 scaffold_396 . repeat_region 11253 11292 . + . description=(CAG)n scaffold_396 . repeat_region 11353 11389 . + . description=Sola3-2_PS scaffold_396 . exon 6099 6212 . + . ID=Physo145022.2;Parent=Physo145022;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_396 . exon 6491 6792 . + . ID=Physo145022.3;Parent=Physo145022;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_392 1 12194 scaffold_392 . repeat_region 636 789 . ? . description=trf scaffold_392 . repeat_region 2595 4067 . ? . description=dust scaffold_392 . repeat_region 4068 4855 . - . description=Polinton-1_PI scaffold_392 . repeat_region 4858 6821 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_389 1 12257 scaffold_389 . repeat_region 2 1144 . - . description=GypsyPi-1c_I-int scaffold_389 . repeat_region 1195 1883 . - . description=GypsyPi-1c_I-int scaffold_389 . biological_region 2192 2192 0.999 - . logic_name=eponine scaffold_389 . biological_region 2370 2371 0.999 - . logic_name=eponine scaffold_389 . biological_region 2444 2447 0.999 + . logic_name=eponine scaffold_389 . biological_region 2471 2474 0.999 - . logic_name=eponine scaffold_389 . biological_region 2540 2544 0.999 - . logic_name=eponine scaffold_389 . biological_region 2562 2563 0.999 - . logic_name=eponine scaffold_389 . biological_region 2900 2903 0.999 - . logic_name=eponine scaffold_389 . biological_region 2942 2942 0.999 + . logic_name=eponine scaffold_389 . repeat_region 3778 3996 . ? . description=dust scaffold_389 . repeat_region 5681 6553 . ? . description=dust scaffold_389 ensembl protein_coding_gene 5244 8831 . + . ID=Physo125777;biotype=protein_coding;external_name=estExt_Genewise1.C_3890002;logic_name=jgi_physo1_1 scaffold_389 ensembl transcript 5244 8831 . + . ID=Physo125777;Parent=Physo125777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_389 . exon 5244 5653 . + . ID=Physo125777.1;Parent=Physo125777;constitutive=1;ensembl_phase=-1;rank=1 scaffold_389 . CDS 5429 5653 . + 0 ID=Physo125777;Parent=Physo125777;rank=1 scaffold_389 . CDS 8808 8831 . + 0 ID=Physo125777;Parent=Physo125777;rank=2 scaffold_389 ensembl protein_coding_gene 182 2549 . - . ID=Physo145013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3890001;logic_name=jgi_physo1_1 scaffold_389 ensembl transcript 182 2549 . - . ID=Physo145013;Parent=Physo145013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_389 . CDS 182 1857 . - 0 ID=Physo145013;Parent=Physo145013;rank=3 scaffold_389 . exon 182 1857 . - . ID=Physo145013.3;Parent=Physo145013;constitutive=1;ensembl_phase=1;rank=3 scaffold_389 . CDS 1978 2112 . - 0 ID=Physo145013;Parent=Physo145013;rank=2 scaffold_389 . exon 1978 2112 . - . ID=Physo145013.2;Parent=Physo145013;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_389 . CDS 2288 2549 . - 0 ID=Physo145013;Parent=Physo145013;rank=1 scaffold_389 . exon 2288 2549 . - . ID=Physo145013.1;Parent=Physo145013;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_389 . exon 8808 8831 . + . ID=Physo125777.2;Parent=Physo125777;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_390 1 12278 scaffold_390 . repeat_region 1267 2667 . ? . description=dust scaffold_390 ensembl protein_coding_gene 5318 7331 . - . ID=Physo145014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3900001;logic_name=jgi_physo1_1 scaffold_390 ensembl transcript 5318 7331 . - . ID=Physo145014;Parent=Physo145014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_390 . exon 5318 7222 . - . ID=Physo145014.2;Parent=Physo145014;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_390 . CDS 5552 7222 . - 0 ID=Physo145014;Parent=Physo145014;rank=2 scaffold_390 . CDS 7272 7331 . - 0 ID=Physo145014;Parent=Physo145014;rank=1 scaffold_390 . biological_region 7389 7389 0.999 + . logic_name=eponine scaffold_390 . biological_region 11840 11840 0.999 + . logic_name=eponine scaffold_390 . biological_region 11904 11906 0.999 - . logic_name=eponine scaffold_390 ensembl protein_coding_gene 11719 11787 . - . ID=Physo125781;biotype=protein_coding;description=Cytochrome c oxidase subunit 3 [Source:UniProtKB/TrEMBL%3BAcc:A4ZH82];external_name=COX3;logic_name=jgi_physo1_1 scaffold_390 ensembl transcript 11719 11787 . - . ID=Physo125781;Parent=Physo125781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_390 . CDS 11719 11787 . - 0 ID=Physo125781;Parent=Physo125781;rank=1 scaffold_390 . exon 11719 11787 . - . ID=Physo125781.1;Parent=Physo125781;constitutive=1;rank=1 scaffold_390 . exon 7272 7331 . - . ID=Physo145014.1;Parent=Physo145014;constitutive=1;rank=1 scaffold_390 ensembl protein_coding_gene 11945 12278 . - . ID=Physo145015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3900002;logic_name=jgi_physo1_1 scaffold_390 ensembl transcript 11945 12278 . - . ID=Physo145015;Parent=Physo145015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_390 . exon 11945 12278 . - . ID=Physo145015.1;Parent=Physo145015;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_390 . CDS 12150 12278 . - 0 ID=Physo145015;Parent=Physo145015;rank=1 ##gff-version 3 ##sequence-region scaffold_388 1 12280 scaffold_388 . biological_region 419 425 0.999 + . logic_name=eponine scaffold_388 . biological_region 464 469 0.999 - . logic_name=eponine scaffold_388 . biological_region 526 531 0.999 - . logic_name=eponine scaffold_388 . biological_region 543 550 0.999 - . logic_name=eponine scaffold_388 . repeat_region 1078 1127 . ? . description=dust scaffold_388 . repeat_region 1495 2759 . + . description=GypsyPi-1c_I-int scaffold_388 . biological_region 2770 2771 0.999 + . logic_name=eponine scaffold_388 . biological_region 3018 3019 0.999 - . logic_name=eponine scaffold_388 . biological_region 3052 3056 0.999 - . logic_name=eponine scaffold_388 . repeat_region 3415 3469 . ? . description=trf scaffold_388 . biological_region 3474 3477 0.999 + . logic_name=eponine scaffold_388 . biological_region 3502 3503 0.999 + . logic_name=eponine scaffold_388 . biological_region 3522 3523 0.999 + . logic_name=eponine scaffold_388 . biological_region 3551 3553 0.999 + . logic_name=eponine scaffold_388 . biological_region 3555 3561 0.999 - . logic_name=eponine scaffold_388 . repeat_region 3612 3658 . ? . description=trf scaffold_388 . biological_region 3640 3645 0.999 + . logic_name=eponine scaffold_388 . biological_region 3658 3663 0.999 - . logic_name=eponine scaffold_388 . biological_region 4081 4087 0.999 - . logic_name=eponine scaffold_388 . biological_region 4162 4162 0.999 + . logic_name=eponine scaffold_388 . repeat_region 4213 4220 . ? . description=dust scaffold_388 . biological_region 4383 4385 0.999 + . logic_name=eponine scaffold_388 . biological_region 4441 4445 0.999 - . logic_name=eponine scaffold_388 . biological_region 4468 4470 0.999 + . logic_name=eponine scaffold_388 . biological_region 4687 4691 0.999 + . logic_name=eponine scaffold_388 . biological_region 5993 5996 0.999 + . logic_name=eponine scaffold_388 . biological_region 6032 6035 0.999 + . logic_name=eponine scaffold_388 . biological_region 6093 6098 0.999 + . logic_name=eponine scaffold_388 . biological_region 6121 6128 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_387 1 12326 scaffold_387 . repeat_region 2684 3142 . ? . description=dust scaffold_387 . repeat_region 4157 4166 . ? . description=dust scaffold_387 . repeat_region 4747 5072 . ? . description=dust scaffold_387 . biological_region 5350 5352 0.999 + . logic_name=eponine scaffold_387 ensembl protein_coding_gene 1472 2662 . + . ID=Physo125775;biotype=protein_coding;external_name=estExt_Genewise1.C_3870010;logic_name=jgi_physo1_1 scaffold_387 ensembl transcript 1472 2662 . + . ID=Physo125775;Parent=Physo125775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_387 . exon 1472 2662 . + . ID=Physo125775.1;Parent=Physo125775;constitutive=1;ensembl_phase=-1;rank=1 scaffold_387 . CDS 1478 2662 . + 0 ID=Physo125775;Parent=Physo125775;rank=1 scaffold_387 . repeat_region 10210 10323 . ? . description=trf scaffold_387 . repeat_region 10308 10374 . ? . description=trf scaffold_387 . repeat_region 10317 10371 . ? . description=trf scaffold_387 . repeat_region 10325 10383 . ? . description=trf scaffold_387 . repeat_region 10326 10389 . ? . description=trf scaffold_387 . repeat_region 10335 10385 . ? . description=trf scaffold_387 . repeat_region 10770 10792 . ? . description=trf scaffold_387 ensembl protein_coding_gene 8119 10749 . - . ID=Physo145012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3870002;logic_name=jgi_physo1_1 scaffold_387 ensembl transcript 8119 10749 . - . ID=Physo145012;Parent=Physo145012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_387 . CDS 8119 10749 . - 0 ID=Physo145012;Parent=Physo145012;rank=1 scaffold_387 . exon 8119 10749 . - . ID=Physo145012.1;Parent=Physo145012;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_386 1 12327 scaffold_386 . repeat_region 396 419 . ? . description=trf scaffold_386 . repeat_region 2038 7521 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_385 1 12335 scaffold_385 . repeat_region 1402 1471 . ? . description=trf scaffold_385 . repeat_region 1423 1475 . ? . description=dust scaffold_385 . repeat_region 1425 1471 . ? . description=trf scaffold_385 . repeat_region 2469 6165 . ? . description=dust scaffold_385 ensembl protein_coding_gene 6166 8614 . + . ID=Physo145009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3850001;logic_name=jgi_physo1_1 scaffold_385 ensembl transcript 6166 8614 . + . ID=Physo145009;Parent=Physo145009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_385 . exon 6166 7225 . + . ID=Physo145009.1;Parent=Physo145009;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_385 . CDS 6655 7225 . + 0 ID=Physo145009;Parent=Physo145009;rank=1 scaffold_385 . CDS 7327 7364 . + 0 ID=Physo145009;Parent=Physo145009;rank=2 scaffold_385 . CDS 7499 8614 . + 0 ID=Physo145009;Parent=Physo145009;rank=3 scaffold_385 . repeat_region 11203 11380 . + . description=(TCG)n scaffold_385 ensembl protein_coding_gene 9655 10062 . - . ID=Physo125765;biotype=protein_coding;external_name=estExt_Genewise1.C_3850002;logic_name=jgi_physo1_1 scaffold_385 ensembl transcript 9655 10062 . - . ID=Physo125765;Parent=Physo125765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_385 . CDS 9655 10020 . - 0 ID=Physo125765;Parent=Physo125765;rank=1 scaffold_385 . exon 9655 10062 . - . ID=Physo125765.1;Parent=Physo125765;constitutive=1;ensembl_phase=-1;rank=1 scaffold_385 . exon 7327 7364 . + . ID=Physo145009.2;Parent=Physo145009;constitutive=1;ensembl_phase=1;rank=2 scaffold_385 . exon 7499 8614 . + . ID=Physo145009.3;Parent=Physo145009;constitutive=1;rank=3 scaffold_385 ensembl protein_coding_gene 10736 11635 . - . ID=Physo145010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3850002;logic_name=jgi_physo1_1 scaffold_385 ensembl transcript 10736 11635 . - . ID=Physo145010;Parent=Physo145010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_385 . CDS 10736 11635 . - 0 ID=Physo145010;Parent=Physo145010;rank=1 scaffold_385 . exon 10736 11635 . - . ID=Physo145010.1;Parent=Physo145010;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_380 1 12452 scaffold_380 . repeat_region 2369 2841 . ? . description=dust scaffold_380 . biological_region 4451 4456 0.999 + . logic_name=eponine scaffold_380 . biological_region 4481 4481 0.999 - . logic_name=eponine scaffold_380 . biological_region 4492 4494 0.999 + . logic_name=eponine scaffold_380 . biological_region 4547 4551 0.999 - . logic_name=eponine scaffold_380 . biological_region 5003 5004 0.999 + . logic_name=eponine scaffold_380 . biological_region 5136 5140 0.999 + . logic_name=eponine scaffold_380 . biological_region 5704 5706 0.999 + . logic_name=eponine scaffold_380 . biological_region 5750 5753 0.999 + . logic_name=eponine scaffold_380 ensembl protein_coding_gene 4945 8361 . + . ID=Physo109693;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_3800001;logic_name=jgi_physo1_1 scaffold_380 ensembl transcript 4945 8361 . + . ID=Physo109693;Parent=Physo109693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_380 . CDS 4945 6254 . + 0 ID=Physo109693;Parent=Physo109693;rank=1 scaffold_380 . exon 4945 6254 . + . ID=Physo109693.1;Parent=Physo109693;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_380 . CDS 6712 7349 . + 0 ID=Physo109693;Parent=Physo109693;rank=2 scaffold_380 . CDS 8134 8258 . + 0 ID=Physo109693;Parent=Physo109693;rank=3 scaffold_380 . CDS 8332 8361 . + 0 ID=Physo109693;Parent=Physo109693;rank=4 scaffold_380 . repeat_region 7597 7626 . ? . description=trf scaffold_380 . repeat_region 8992 9015 . ? . description=trf scaffold_380 . exon 6712 7349 . + . ID=Physo109693.2;Parent=Physo109693;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_380 . exon 8134 8258 . + . ID=Physo109693.3;Parent=Physo109693;constitutive=1;ensembl_phase=1;rank=3 scaffold_380 . exon 8332 8361 . + . ID=Physo109693.4;Parent=Physo109693;constitutive=1;rank=4 scaffold_380 ensembl protein_coding_gene 8791 11325 . + . ID=Physo144998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3800002;logic_name=jgi_physo1_1 scaffold_380 ensembl transcript 8791 11325 . + . ID=Physo144998;Parent=Physo144998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_380 . CDS 8791 8936 . + 0 ID=Physo144998;Parent=Physo144998;rank=1 scaffold_380 . exon 8791 8936 . + . ID=Physo144998.1;Parent=Physo144998;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_380 . CDS 9034 9167 . + 0 ID=Physo144998;Parent=Physo144998;rank=2 scaffold_380 . exon 9034 9167 . + . ID=Physo144998.2;Parent=Physo144998;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_380 . CDS 9250 9340 . + 0 ID=Physo144998;Parent=Physo144998;rank=3 scaffold_380 . exon 9250 9340 . + . ID=Physo144998.3;Parent=Physo144998;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_380 . CDS 9419 9638 . + 0 ID=Physo144998;Parent=Physo144998;rank=4 scaffold_380 . exon 9419 9638 . + . ID=Physo144998.4;Parent=Physo144998;constitutive=1;ensembl_phase=2;rank=4 scaffold_380 . CDS 11098 11325 . + 0 ID=Physo144998;Parent=Physo144998;rank=5 scaffold_380 . exon 11098 11325 . + . ID=Physo144998.5;Parent=Physo144998;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_379 1 12459 scaffold_379 . repeat_region 818 831 . ? . description=dust scaffold_379 . repeat_region 838 849 . ? . description=dust scaffold_379 . repeat_region 1281 1293 . ? . description=dust scaffold_379 . biological_region 2264 2268 0.999 + . logic_name=eponine scaffold_379 . repeat_region 2775 2786 . ? . description=dust scaffold_379 . biological_region 3653 3653 0.999 - . logic_name=eponine scaffold_379 . repeat_region 4154 4167 . ? . description=dust scaffold_379 . repeat_region 8134 8158 . ? . description=trf scaffold_379 . repeat_region 9703 9745 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_382 1 12470 scaffold_382 . repeat_region 1033 1082 . ? . description=dust scaffold_382 . biological_region 2386 2387 0.999 - . logic_name=eponine scaffold_382 . biological_region 2445 2446 0.999 + . logic_name=eponine scaffold_382 . biological_region 5205 5209 0.999 + . logic_name=eponine scaffold_382 . biological_region 5227 5231 0.999 + . logic_name=eponine scaffold_382 ensembl tRNA_gene 328 399 . + . ID=EPrPSOG00000000103;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_382 ensembl transcript 328 399 . + . ID=EPrPSOT00000000103;Parent=EPrPSOG00000000103;biotype=tRNA;logic_name=ncrna_eg scaffold_382 . exon 328 399 . + . ID=EPrPSOE00000000103;Parent=EPrPSOT00000000103;constitutive=1;rank=1 scaffold_382 ensembl protein_coding_gene 708 2002 . - . ID=Physo145003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3820001;logic_name=jgi_physo1_1 scaffold_382 ensembl transcript 708 2002 . - . ID=Physo145003;Parent=Physo145003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_382 . CDS 708 1018 . - 0 ID=Physo145003;Parent=Physo145003;rank=3 scaffold_382 . exon 708 1018 . - . ID=Physo145003.3;Parent=Physo145003;constitutive=1;ensembl_phase=1;rank=3 scaffold_382 . CDS 1192 1507 . - 0 ID=Physo145003;Parent=Physo145003;rank=2 scaffold_382 . exon 1192 1507 . - . ID=Physo145003.2;Parent=Physo145003;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_382 . CDS 1628 2002 . - 0 ID=Physo145003;Parent=Physo145003;rank=1 scaffold_382 . exon 1628 2002 . - . ID=Physo145003.1;Parent=Physo145003;constitutive=1;rank=1 scaffold_382 ensembl protein_coding_gene 2634 4928 . - . ID=Physo145004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3820002;logic_name=jgi_physo1_1 scaffold_382 ensembl transcript 2634 4928 . - . ID=Physo145004;Parent=Physo145004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_382 . CDS 2634 3970 . - 0 ID=Physo145004;Parent=Physo145004;rank=2 scaffold_382 . exon 2634 3970 . - . ID=Physo145004.2;Parent=Physo145004;constitutive=1;ensembl_phase=1;rank=2 scaffold_382 . CDS 4023 4908 . - 0 ID=Physo145004;Parent=Physo145004;rank=1 scaffold_382 . exon 4023 4928 . - . ID=Physo145004.1;Parent=Physo145004;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_382 . repeat_region 6283 6313 . ? . description=trf scaffold_382 . repeat_region 7580 7656 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_360 1 12475 scaffold_360 . repeat_region 5024 5031 . ? . description=dust scaffold_360 ensembl protein_coding_gene 753 1193 . - . ID=Physo125734;biotype=protein_coding;external_name=estExt_Genewise1.C_3600001;logic_name=jgi_physo1_1 scaffold_360 ensembl transcript 753 1193 . - . ID=Physo125734;Parent=Physo125734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_360 . exon 753 1193 . - . ID=Physo125734.1;Parent=Physo125734;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_360 . CDS 754 831 . - 0 ID=Physo125734;Parent=Physo125734;rank=1 scaffold_360 ensembl protein_coding_gene 3088 4283 . - . ID=Physo144969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3600001;logic_name=jgi_physo1_1 scaffold_360 ensembl transcript 3088 4283 . - . ID=Physo144969;Parent=Physo144969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_360 . CDS 3088 3281 . - 0 ID=Physo144969;Parent=Physo144969;rank=3 scaffold_360 . exon 3088 3281 . - . ID=Physo144969.3;Parent=Physo144969;constitutive=1;ensembl_phase=1;rank=3 scaffold_360 . CDS 3486 3878 . - 0 ID=Physo144969;Parent=Physo144969;rank=2 scaffold_360 . exon 3486 3878 . - . ID=Physo144969.2;Parent=Physo144969;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_360 . CDS 3926 4283 . - 0 ID=Physo144969;Parent=Physo144969;rank=1 scaffold_360 . exon 3926 4283 . - . ID=Physo144969.1;Parent=Physo144969;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_360 ensembl protein_coding_gene 5963 7285 . - . ID=Physo144970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3600002;logic_name=jgi_physo1_1 scaffold_360 ensembl transcript 5963 7285 . - . ID=Physo144970;Parent=Physo144970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_360 . CDS 5963 6810 . - 0 ID=Physo144970;Parent=Physo144970;rank=3 scaffold_360 . exon 5963 6810 . - . ID=Physo144970.3;Parent=Physo144970;constitutive=1;ensembl_phase=1;rank=3 scaffold_360 . CDS 6963 7084 . - 0 ID=Physo144970;Parent=Physo144970;rank=2 scaffold_360 . CDS 7263 7285 . - 0 ID=Physo144970;Parent=Physo144970;rank=1 scaffold_360 . biological_region 12388 12391 0.999 - . logic_name=eponine scaffold_360 . exon 6963 7084 . - . ID=Physo144970.2;Parent=Physo144970;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_360 . exon 7263 7285 . - . ID=Physo144970.1;Parent=Physo144970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_360 ensembl protein_coding_gene 8592 9820 . - . ID=Physo144971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3600003;logic_name=jgi_physo1_1 scaffold_360 ensembl transcript 8592 9820 . - . ID=Physo144971;Parent=Physo144971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_360 . exon 8592 8872 . - . ID=Physo144971.2;Parent=Physo144971;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_360 . CDS 8669 8872 . - 0 ID=Physo144971;Parent=Physo144971;rank=2 scaffold_360 . CDS 9164 9820 . - 0 ID=Physo144971;Parent=Physo144971;rank=1 scaffold_360 . exon 9164 9820 . - . ID=Physo144971.1;Parent=Physo144971;constitutive=1;rank=1 scaffold_360 ensembl protein_coding_gene 10120 10968 . + . ID=Physo144972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3600004;logic_name=jgi_physo1_1 scaffold_360 ensembl transcript 10120 10968 . + . ID=Physo144972;Parent=Physo144972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_360 . CDS 10120 10968 . + 0 ID=Physo144972;Parent=Physo144972;rank=1 scaffold_360 . exon 10120 10968 . + . ID=Physo144972.1;Parent=Physo144972;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_384 1 12499 scaffold_384 . biological_region 1539 1541 0.999 + . logic_name=eponine scaffold_384 . repeat_region 1645 2977 . ? . description=dust scaffold_384 . biological_region 5256 5258 0.999 - . logic_name=eponine scaffold_384 . repeat_region 5431 5480 . ? . description=dust scaffold_384 . repeat_region 5755 5783 . ? . description=dust scaffold_384 . repeat_region 5755 5783 . ? . description=trf scaffold_384 . biological_region 5842 5844 0.999 - . logic_name=eponine scaffold_384 . biological_region 5914 5916 0.999 - . logic_name=eponine scaffold_384 ensembl protein_coding_gene 11 596 . + . ID=Physo145005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3840001;logic_name=jgi_physo1_1 scaffold_384 ensembl transcript 11 596 . + . ID=Physo145005;Parent=Physo145005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_384 . exon 11 596 . + . ID=Physo145005.1;Parent=Physo145005;constitutive=1;ensembl_phase=-1;rank=1 scaffold_384 . CDS 27 596 . + 0 ID=Physo145005;Parent=Physo145005;rank=1 scaffold_384 ensembl protein_coding_gene 4251 6303 . + . ID=Physo145006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3840002;logic_name=jgi_physo1_1 scaffold_384 ensembl transcript 4251 6303 . + . ID=Physo145006;Parent=Physo145006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_384 . CDS 4251 4275 . + 0 ID=Physo145006;Parent=Physo145006;rank=1 scaffold_384 . exon 4251 4275 . + . ID=Physo145006.1;Parent=Physo145006;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_384 . CDS 4343 5226 . + 0 ID=Physo145006;Parent=Physo145006;rank=2 scaffold_384 . exon 4343 5226 . + . ID=Physo145006.2;Parent=Physo145006;constitutive=1;ensembl_phase=1;rank=2 scaffold_384 . CDS 5488 6303 . + 0 ID=Physo145006;Parent=Physo145006;rank=3 scaffold_384 . exon 5488 6303 . + . ID=Physo145006.3;Parent=Physo145006;constitutive=1;rank=3 scaffold_384 ensembl protein_coding_gene 6730 8107 . + . ID=Physo145007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3840003;logic_name=jgi_physo1_1 scaffold_384 ensembl transcript 6730 8107 . + . ID=Physo145007;Parent=Physo145007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_384 . CDS 6730 7949 . + 0 ID=Physo145007;Parent=Physo145007;rank=1 scaffold_384 . exon 6730 7949 . + . ID=Physo145007.1;Parent=Physo145007;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_384 . CDS 8071 8107 . + 0 ID=Physo145007;Parent=Physo145007;rank=2 scaffold_384 . exon 8071 8107 . + . ID=Physo145007.2;Parent=Physo145007;constitutive=1;ensembl_phase=2;rank=2 scaffold_384 ensembl protein_coding_gene 9327 12092 . + . ID=Physo145008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3840004;logic_name=jgi_physo1_1 scaffold_384 ensembl transcript 9327 12092 . + . ID=Physo145008;Parent=Physo145008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_384 . CDS 9327 12092 . + 0 ID=Physo145008;Parent=Physo145008;rank=1 scaffold_384 . exon 9327 12092 . + . ID=Physo145008.1;Parent=Physo145008;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_377 1 12504 scaffold_377 . biological_region 1567 1570 0.999 + . logic_name=eponine scaffold_377 . repeat_region 3718 3726 . ? . description=dust scaffold_377 . repeat_region 5349 5356 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_383 1 12514 scaffold_383 . repeat_region 1272 1279 . ? . description=dust scaffold_383 . biological_region 4401 4405 0.999 + . logic_name=eponine scaffold_383 . repeat_region 4575 5946 . - . description=Polinton-1_PI scaffold_383 . repeat_region 10575 10614 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_375 1 12583 scaffold_375 ensembl protein_coding_gene 2893 4695 . + . ID=Physo125747;biotype=protein_coding;external_name=estExt_Genewise1.C_3750001;logic_name=jgi_physo1_1 scaffold_375 ensembl transcript 2893 4695 . + . ID=Physo125747;Parent=Physo125747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_375 . exon 2893 4695 . + . ID=Physo125747.1;Parent=Physo125747;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_375 . CDS 2977 3735 . + 0 ID=Physo125747;Parent=Physo125747;rank=1 scaffold_375 . biological_region 7268 7271 0.999 + . logic_name=eponine scaffold_375 . repeat_region 8493 8500 . ? . description=dust scaffold_375 . repeat_region 10306 10372 . ? . description=trf scaffold_375 . biological_region 11316 11321 0.999 + . logic_name=eponine scaffold_375 . repeat_region 12332 12340 . ? . description=dust scaffold_375 ensembl protein_coding_gene 11962 12566 . - . ID=Physo125748;biotype=protein_coding;external_name=estExt_Genewise1.C_3750002;logic_name=jgi_physo1_1 scaffold_375 ensembl transcript 11962 12566 . - . ID=Physo125748;Parent=Physo125748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_375 . CDS 11962 12240 . - 0 ID=Physo125748;Parent=Physo125748;rank=1 scaffold_375 . exon 11962 12430 . - . ID=Physo125748.2;Parent=Physo125748;constitutive=1;ensembl_phase=-1;rank=2 scaffold_375 . exon 12503 12566 . - . ID=Physo125748.1;Parent=Physo125748;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_375 ensembl protein_coding_gene 9908 10381 . + . ID=Physo144995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3750001;logic_name=jgi_physo1_1 scaffold_375 ensembl transcript 9908 10381 . + . ID=Physo144995;Parent=Physo144995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_375 . CDS 9908 9916 . + 0 ID=Physo144995;Parent=Physo144995;rank=1 scaffold_375 . exon 9908 9916 . + . ID=Physo144995.1;Parent=Physo144995;constitutive=1;rank=1 scaffold_375 . CDS 9995 10090 . + 0 ID=Physo144995;Parent=Physo144995;rank=2 scaffold_375 . exon 9995 10090 . + . ID=Physo144995.2;Parent=Physo144995;constitutive=1;rank=2 scaffold_375 . CDS 10120 10133 . + 0 ID=Physo144995;Parent=Physo144995;rank=3 scaffold_375 . exon 10120 10133 . + . ID=Physo144995.3;Parent=Physo144995;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_375 . CDS 10198 10381 . + 0 ID=Physo144995;Parent=Physo144995;rank=4 scaffold_375 . exon 10198 10381 . + . ID=Physo144995.4;Parent=Physo144995;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_378 1 12626 scaffold_378 . repeat_region 1060 1244 . - . description=Polinton-1_PI scaffold_378 . repeat_region 1260 1326 . - . description=Polinton-1_PI scaffold_378 . repeat_region 1350 1495 . + . description=Polinton-1_PI scaffold_378 . repeat_region 1614 3688 . ? . description=dust scaffold_378 . repeat_region 3698 4386 . - . description=Polinton-1_PI scaffold_378 . repeat_region 4766 6107 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_372 1 12632 scaffold_372 . repeat_region 1466 2721 . ? . description=dust scaffold_372 . repeat_region 3502 6486 . ? . description=dust scaffold_372 ensembl protein_coding_gene 546 1359 . + . ID=Physo144993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3720001;logic_name=jgi_physo1_1 scaffold_372 ensembl transcript 546 1359 . + . ID=Physo144993;Parent=Physo144993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_372 . CDS 546 797 . + 0 ID=Physo144993;Parent=Physo144993;rank=1 scaffold_372 . exon 546 797 . + . ID=Physo144993.1;Parent=Physo144993;constitutive=1;rank=1 scaffold_372 . CDS 851 1012 . + 0 ID=Physo144993;Parent=Physo144993;rank=2 scaffold_372 . exon 851 1012 . + . ID=Physo144993.2;Parent=Physo144993;constitutive=1;rank=2 scaffold_372 . CDS 1088 1357 . + 0 ID=Physo144993;Parent=Physo144993;rank=3 scaffold_372 . exon 1088 1359 . + . ID=Physo144993.3;Parent=Physo144993;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_372 ensembl protein_coding_gene 12048 12499 . - . ID=Physo144994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3720002;logic_name=jgi_physo1_1 scaffold_372 ensembl transcript 12048 12499 . - . ID=Physo144994;Parent=Physo144994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_372 . CDS 12048 12119 . - 0 ID=Physo144994;Parent=Physo144994;rank=3 scaffold_372 . exon 12048 12119 . - . ID=Physo144994.3;Parent=Physo144994;constitutive=1;rank=3 scaffold_372 . CDS 12139 12332 . - 0 ID=Physo144994;Parent=Physo144994;rank=2 scaffold_372 . exon 12139 12332 . - . ID=Physo144994.2;Parent=Physo144994;constitutive=1;ensembl_phase=1;rank=2 scaffold_372 . CDS 12367 12499 . - 0 ID=Physo144994;Parent=Physo144994;rank=1 scaffold_372 . exon 12367 12499 . - . ID=Physo144994.1;Parent=Physo144994;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_381 1 12733 scaffold_381 . repeat_region 1251 1260 . ? . description=dust scaffold_381 . repeat_region 2768 4116 . ? . description=dust scaffold_381 . repeat_region 5356 8418 . ? . description=dust scaffold_381 ensembl protein_coding_gene 4493 5024 . - . ID=Physo109694;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_3810001;logic_name=jgi_physo1_1 scaffold_381 ensembl transcript 4493 5024 . - . ID=Physo109694;Parent=Physo109694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_381 . CDS 4493 4535 . - 0 ID=Physo109694;Parent=Physo109694;rank=2 scaffold_381 . exon 4493 4535 . - . ID=Physo109694.2;Parent=Physo109694;constitutive=1;ensembl_phase=2;rank=2 scaffold_381 . CDS 4570 5024 . - 0 ID=Physo109694;Parent=Physo109694;rank=1 scaffold_381 . exon 4570 5024 . - . ID=Physo109694.1;Parent=Physo109694;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_381 ensembl protein_coding_gene 1 566 . + . ID=Physo144999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3810001;logic_name=jgi_physo1_1 scaffold_381 ensembl transcript 1 566 . + . ID=Physo144999;Parent=Physo144999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_381 . exon 1 566 . + . ID=Physo144999.1;Parent=Physo144999;constitutive=1;ensembl_phase=-1;rank=1 scaffold_381 . CDS 156 566 . + 0 ID=Physo144999;Parent=Physo144999;rank=1 scaffold_381 ensembl protein_coding_gene 2136 4421 . - . ID=Physo145000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3810002;logic_name=jgi_physo1_1 scaffold_381 ensembl transcript 2136 4421 . - . ID=Physo145000;Parent=Physo145000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_381 . CDS 2136 2753 . - 0 ID=Physo145000;Parent=Physo145000;rank=2 scaffold_381 . exon 2136 2753 . - . ID=Physo145000.2;Parent=Physo145000;constitutive=1;rank=2 scaffold_381 . CDS 4137 4418 . - 0 ID=Physo145000;Parent=Physo145000;rank=1 scaffold_381 . exon 4137 4421 . - . ID=Physo145000.1;Parent=Physo145000;constitutive=1;ensembl_phase=-1;rank=1 scaffold_381 ensembl protein_coding_gene 8647 11491 . + . ID=Physo145002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3810004;logic_name=jgi_physo1_1 scaffold_381 ensembl transcript 8647 11491 . + . ID=Physo145002;Parent=Physo145002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_381 . CDS 8647 9516 . + 0 ID=Physo145002;Parent=Physo145002;rank=1 scaffold_381 . exon 8647 9516 . + . ID=Physo145002.1;Parent=Physo145002;constitutive=1;rank=1 scaffold_381 . CDS 10940 11491 . + 0 ID=Physo145002;Parent=Physo145002;rank=2 scaffold_381 . exon 10940 11491 . + . ID=Physo145002.2;Parent=Physo145002;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_370 1 12817 scaffold_370 . repeat_region 226 357 . ? . description=trf scaffold_370 . repeat_region 1053 4773 . ? . description=dust scaffold_370 . repeat_region 4975 5064 . ? . description=trf scaffold_370 . biological_region 5517 5521 0.999 - . logic_name=eponine scaffold_370 . biological_region 5745 5748 0.999 + . logic_name=eponine scaffold_370 . biological_region 5759 5763 0.999 - . logic_name=eponine scaffold_370 . biological_region 5794 5798 0.999 - . logic_name=eponine scaffold_370 . biological_region 5840 5848 0.999 - . logic_name=eponine scaffold_370 . biological_region 5870 5876 0.999 - . logic_name=eponine scaffold_370 . biological_region 6066 6070 0.999 + . logic_name=eponine scaffold_370 . biological_region 6321 6325 0.999 + . logic_name=eponine scaffold_370 . biological_region 6365 6366 0.999 + . logic_name=eponine scaffold_370 ensembl snRNA_gene 3 132 . - . ID=EPrPSOG00000000066;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_370 ensembl snRNA 3 132 . - . ID=EPrPSOT00000000066;Parent=EPrPSOG00000000066;biotype=snRNA;logic_name=ncrna_eg scaffold_370 ensembl snRNA_gene 5138 5280 . - . ID=EPrPSOG00000000120;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_370 ensembl snRNA 5138 5280 . - . ID=EPrPSOT00000000120;Parent=EPrPSOG00000000120;biotype=snRNA;logic_name=ncrna_eg scaffold_370 ensembl snRNA_gene 4787 4881 . - . ID=EPrPSOG00000000262;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_370 ensembl snRNA 4787 4881 . - . ID=EPrPSOT00000000262;Parent=EPrPSOG00000000262;biotype=snRNA;logic_name=ncrna_eg scaffold_370 . exon 3 132 . - . ID=EPrPSOE00000000066;Parent=EPrPSOT00000000066;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_370 . exon 5138 5280 . - . ID=EPrPSOE00000000120;Parent=EPrPSOT00000000120;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_370 . exon 4787 4881 . - . ID=EPrPSOE00000000262;Parent=EPrPSOT00000000262;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_370 ensembl snRNA_gene 12642 12786 . - . ID=EPrPSOG00000000194;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_370 ensembl snRNA 12642 12786 . - . ID=EPrPSOT00000000194;Parent=EPrPSOG00000000194;biotype=snRNA;logic_name=ncrna_eg scaffold_370 . exon 12642 12786 . - . ID=EPrPSOE00000000194;Parent=EPrPSOT00000000194;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_366 1 12890 scaffold_366 . repeat_region 2036 2085 . ? . description=dust scaffold_366 . biological_region 3036 3040 0.999 + . logic_name=eponine scaffold_366 . repeat_region 4330 5326 . ? . description=dust scaffold_366 . repeat_region 5462 5486 . ? . description=trf scaffold_366 . biological_region 5557 5561 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_364 1 12904 scaffold_364 . repeat_region 211 899 . + . description=GypsyPi-1c_I-int scaffold_364 . repeat_region 950 2333 . + . description=GypsyPi-1c_I-int scaffold_364 . repeat_region 2390 2471 . ? . description=trf scaffold_364 . repeat_region 2390 2498 . ? . description=trf scaffold_364 . repeat_region 2651 2886 . + . description=GypsyPi-1c_I-int scaffold_364 . biological_region 3502 3506 0.999 - . logic_name=eponine scaffold_364 . biological_region 4051 4057 0.999 + . logic_name=eponine scaffold_364 . biological_region 4080 4083 0.999 + . logic_name=eponine scaffold_364 . biological_region 4151 4155 0.999 - . logic_name=eponine scaffold_364 . biological_region 4169 4172 0.999 - . logic_name=eponine scaffold_364 . repeat_region 4516 4523 . ? . description=dust scaffold_364 . repeat_region 6282 6295 . ? . description=dust scaffold_364 ensembl protein_coding_gene 98 2650 . + . ID=Physo144982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3640001;logic_name=jgi_physo1_1 scaffold_364 ensembl transcript 98 2650 . + . ID=Physo144982;Parent=Physo144982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_364 . CDS 98 213 . + 0 ID=Physo144982;Parent=Physo144982;rank=1 scaffold_364 . exon 98 213 . + . ID=Physo144982.1;Parent=Physo144982;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_364 . CDS 418 2230 . + 0 ID=Physo144982;Parent=Physo144982;rank=2 scaffold_364 . exon 418 2230 . + . ID=Physo144982.2;Parent=Physo144982;constitutive=1;ensembl_phase=2;rank=2 scaffold_364 . CDS 2278 2600 . + 0 ID=Physo144982;Parent=Physo144982;rank=3 scaffold_364 . exon 2278 2600 . + . ID=Physo144982.3;Parent=Physo144982;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_364 . CDS 2644 2650 . + 0 ID=Physo144982;Parent=Physo144982;rank=4 scaffold_364 . exon 2644 2650 . + . ID=Physo144982.4;Parent=Physo144982;constitutive=1;ensembl_phase=2;rank=4 scaffold_364 ensembl protein_coding_gene 2903 4648 . - . ID=Physo144983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3640002;logic_name=jgi_physo1_1 scaffold_364 ensembl transcript 2903 4648 . - . ID=Physo144983;Parent=Physo144983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_364 . CDS 2903 3091 . - 0 ID=Physo144983;Parent=Physo144983;rank=5 scaffold_364 . exon 2903 3091 . - . ID=Physo144983.5;Parent=Physo144983;constitutive=1;rank=5 scaffold_364 . CDS 3162 3218 . - 0 ID=Physo144983;Parent=Physo144983;rank=4 scaffold_364 . exon 3162 3218 . - . ID=Physo144983.4;Parent=Physo144983;constitutive=1;rank=4 scaffold_364 . CDS 3431 3715 . - 0 ID=Physo144983;Parent=Physo144983;rank=3 scaffold_364 . exon 3431 3715 . - . ID=Physo144983.3;Parent=Physo144983;constitutive=1;rank=3 scaffold_364 . CDS 3917 4380 . - 0 ID=Physo144983;Parent=Physo144983;rank=2 scaffold_364 . exon 3917 4380 . - . ID=Physo144983.2;Parent=Physo144983;constitutive=1;ensembl_phase=1;rank=2 scaffold_364 . CDS 4633 4648 . - 0 ID=Physo144983;Parent=Physo144983;rank=1 scaffold_364 . exon 4633 4648 . - . ID=Physo144983.1;Parent=Physo144983;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_364 ensembl protein_coding_gene 6307 6895 . + . ID=Physo144984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3640003;logic_name=jgi_physo1_1 scaffold_364 ensembl transcript 6307 6895 . + . ID=Physo144984;Parent=Physo144984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_364 . CDS 6307 6837 . + 0 ID=Physo144984;Parent=Physo144984;rank=1 scaffold_364 . exon 6307 6837 . + . ID=Physo144984.1;Parent=Physo144984;constitutive=1;rank=1 scaffold_364 . CDS 6860 6895 . + 0 ID=Physo144984;Parent=Physo144984;rank=2 scaffold_364 . exon 6860 6895 . + . ID=Physo144984.2;Parent=Physo144984;constitutive=1;rank=2 scaffold_364 ensembl protein_coding_gene 10066 11398 . - . ID=Physo144985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3640004;logic_name=jgi_physo1_1 scaffold_364 ensembl transcript 10066 11398 . - . ID=Physo144985;Parent=Physo144985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_364 . CDS 10066 10231 . - 0 ID=Physo144985;Parent=Physo144985;rank=4 scaffold_364 . exon 10066 10231 . - . ID=Physo144985.4;Parent=Physo144985;constitutive=1;ensembl_phase=2;rank=4 scaffold_364 . CDS 10405 10645 . - 0 ID=Physo144985;Parent=Physo144985;rank=3 scaffold_364 . exon 10405 10645 . - . ID=Physo144985.3;Parent=Physo144985;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_364 . CDS 10669 10947 . - 0 ID=Physo144985;Parent=Physo144985;rank=2 scaffold_364 . exon 10669 10947 . - . ID=Physo144985.2;Parent=Physo144985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_364 . CDS 10998 11220 . - 0 ID=Physo144985;Parent=Physo144985;rank=1 scaffold_364 . exon 10998 11398 . - . ID=Physo144985.1;Parent=Physo144985;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_364 ensembl protein_coding_gene 11865 12778 . - . ID=Physo144986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3640005;logic_name=jgi_physo1_1 scaffold_364 ensembl transcript 11865 12778 . - . ID=Physo144986;Parent=Physo144986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_364 . CDS 11865 12314 . - 0 ID=Physo144986;Parent=Physo144986;rank=1 scaffold_364 . exon 11865 12778 . - . ID=Physo144986.1;Parent=Physo144986;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_350 1 12924 scaffold_350 . repeat_region 1 4188 . + . description=Polinton-1_PI scaffold_350 . repeat_region 1291 1327 . ? . description=dust scaffold_350 . repeat_region 4005 4012 . ? . description=dust scaffold_350 . repeat_region 4344 8215 . ? . description=dust scaffold_350 ensembl protein_coding_gene 2 313 . + . ID=Physo125716;biotype=protein_coding;external_name=estExt_Genewise1.C_3500001;logic_name=jgi_physo1_1 scaffold_350 ensembl transcript 2 313 . + . ID=Physo125716;Parent=Physo125716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_350 . exon 2 313 . + . ID=Physo125716.1;Parent=Physo125716;constitutive=1;ensembl_phase=-1;rank=1 scaffold_350 . CDS 125 313 . + 0 ID=Physo125716;Parent=Physo125716;rank=1 ##gff-version 3 ##sequence-region scaffold_373 1 12959 scaffold_373 . repeat_region 181 216 . ? . description=trf scaffold_373 . repeat_region 277 329 . ? . description=trf scaffold_373 . repeat_region 277 329 . ? . description=trf scaffold_373 . repeat_region 471 506 . ? . description=trf scaffold_373 . repeat_region 511 555 . ? . description=trf scaffold_373 . repeat_region 595 647 . ? . description=trf scaffold_373 . repeat_region 595 647 . ? . description=trf scaffold_373 . repeat_region 1319 1368 . ? . description=dust scaffold_373 . repeat_region 2746 2795 . ? . description=dust scaffold_373 . repeat_region 3010 3045 . ? . description=trf scaffold_373 . repeat_region 3106 3158 . ? . description=trf scaffold_373 . repeat_region 3106 3158 . ? . description=trf scaffold_373 . repeat_region 3300 3335 . ? . description=trf scaffold_373 . repeat_region 3340 3384 . ? . description=trf scaffold_373 . repeat_region 3424 3476 . ? . description=trf scaffold_373 . repeat_region 3424 3476 . ? . description=trf scaffold_373 . repeat_region 3551 6856 . ? . description=dust scaffold_373 . biological_region 8078 8078 0.999 + . logic_name=eponine scaffold_373 . biological_region 10410 10410 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_367 1 13018 scaffold_367 . repeat_region 1279 4522 . ? . description=dust scaffold_367 ensembl protein_coding_gene 532 1275 . - . ID=Physo144987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3670001;logic_name=jgi_physo1_1 scaffold_367 ensembl transcript 532 1275 . - . ID=Physo144987;Parent=Physo144987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_367 . CDS 532 879 . - 0 ID=Physo144987;Parent=Physo144987;rank=3 scaffold_367 . exon 532 879 . - . ID=Physo144987.3;Parent=Physo144987;constitutive=1;rank=3 scaffold_367 . CDS 910 1165 . - 0 ID=Physo144987;Parent=Physo144987;rank=2 scaffold_367 . exon 910 1165 . - . ID=Physo144987.2;Parent=Physo144987;constitutive=1;ensembl_phase=2;rank=2 scaffold_367 . CDS 1202 1275 . - 0 ID=Physo144987;Parent=Physo144987;rank=1 scaffold_367 . exon 1202 1275 . - . ID=Physo144987.1;Parent=Physo144987;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_367 ensembl protein_coding_gene 6369 6901 . - . ID=Physo144988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3670002;logic_name=jgi_physo1_1 scaffold_367 ensembl transcript 6369 6901 . - . ID=Physo144988;Parent=Physo144988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_367 . CDS 6369 6572 . - 0 ID=Physo144988;Parent=Physo144988;rank=2 scaffold_367 . exon 6369 6572 . - . ID=Physo144988.2;Parent=Physo144988;constitutive=1;rank=2 scaffold_367 . CDS 6635 6877 . - 0 ID=Physo144988;Parent=Physo144988;rank=1 scaffold_367 . biological_region 6692 6698 0.999 + . logic_name=eponine scaffold_367 . biological_region 6788 6793 0.999 - . logic_name=eponine scaffold_367 . repeat_region 12679 12728 . ? . description=trf scaffold_367 . biological_region 12931 12933 0.999 + . logic_name=eponine scaffold_367 . biological_region 12952 12952 0.999 + . logic_name=eponine scaffold_367 . biological_region 12988 12995 0.999 - . logic_name=eponine scaffold_367 . exon 6635 6901 . - . ID=Physo144988.1;Parent=Physo144988;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_371 1 13021 scaffold_371 . biological_region 810 812 0.999 + . logic_name=eponine scaffold_371 . biological_region 872 879 0.999 - . logic_name=eponine scaffold_371 . biological_region 929 932 0.999 + . logic_name=eponine scaffold_371 . biological_region 2241 2250 0.999 + . logic_name=eponine scaffold_371 . repeat_region 2260 2354 . ? . description=trf scaffold_371 . biological_region 2300 2301 0.999 + . logic_name=eponine scaffold_371 . biological_region 2377 2380 0.999 - . logic_name=eponine scaffold_371 . repeat_region 2408 3338 . ? . description=dust scaffold_371 . repeat_region 4134 4158 . ? . description=trf scaffold_371 . repeat_region 4134 4165 . ? . description=dust scaffold_371 . repeat_region 4134 4165 . ? . description=trf scaffold_371 . repeat_region 5606 6375 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_374 1 13072 scaffold_374 . biological_region 891 892 0.999 - . logic_name=eponine scaffold_374 . biological_region 930 934 0.999 + . logic_name=eponine scaffold_374 . biological_region 1291 1293 0.999 + . logic_name=eponine scaffold_374 . biological_region 1351 1352 0.999 + . logic_name=eponine scaffold_374 . repeat_region 1680 2357 . ? . description=dust scaffold_374 . repeat_region 2359 3871 . + . description=GypsyPi-1c_I-int scaffold_374 . repeat_region 3892 3941 . ? . description=dust scaffold_374 . repeat_region 5493 5773 . ? . description=dust scaffold_374 . repeat_region 5779 6165 . + . description=GypsyPi-1c_I-int scaffold_374 . repeat_region 6288 6313 . ? . description=dust scaffold_374 . repeat_region 6288 6313 . ? . description=trf scaffold_374 ensembl tRNA_gene 9299 9368 . + . ID=EPrPSOG00000000038;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_374 ensembl transcript 9299 9368 . + . ID=EPrPSOT00000000038;Parent=EPrPSOG00000000038;biotype=tRNA;logic_name=ncrna_eg scaffold_374 . exon 9299 9368 . + . ID=EPrPSOE00000000038;Parent=EPrPSOT00000000038;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_369 1 13081 scaffold_369 . repeat_region 37 73 . ? . description=trf scaffold_369 . biological_region 795 800 0.999 + . logic_name=eponine scaffold_369 . biological_region 825 833 0.999 + . logic_name=eponine scaffold_369 . biological_region 872 875 0.999 + . logic_name=eponine scaffold_369 . biological_region 880 886 0.999 - . logic_name=eponine scaffold_369 . repeat_region 1355 4020 . ? . description=dust scaffold_369 . biological_region 5294 5300 0.999 + . logic_name=eponine scaffold_369 . biological_region 5305 5308 0.999 - . logic_name=eponine scaffold_369 . biological_region 5347 5355 0.999 - . logic_name=eponine scaffold_369 . biological_region 5380 5385 0.999 - . logic_name=eponine scaffold_369 . repeat_region 6111 6147 . ? . description=trf scaffold_369 . biological_region 6158 6161 0.999 - . logic_name=eponine scaffold_369 . repeat_region 6237 6251 . ? . description=dust scaffold_369 . biological_region 6453 6454 0.999 + . logic_name=eponine scaffold_369 . biological_region 6469 6474 0.999 - . logic_name=eponine scaffold_369 . biological_region 6470 6474 0.999 + . logic_name=eponine scaffold_369 . biological_region 6515 6518 0.999 - . logic_name=eponine scaffold_369 . biological_region 6537 6538 0.999 - . logic_name=eponine scaffold_369 ensembl protein_coding_gene 6249 7517 . + . ID=Physo144990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3690001;logic_name=jgi_physo1_1 scaffold_369 ensembl transcript 6249 7517 . + . ID=Physo144990;Parent=Physo144990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_369 . exon 6249 7517 . + . ID=Physo144990.1;Parent=Physo144990;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_369 . CDS 6271 7455 . + 0 ID=Physo144990;Parent=Physo144990;rank=1 scaffold_369 ensembl protein_coding_gene 7940 8969 . + . ID=Physo144991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3690002;logic_name=jgi_physo1_1 scaffold_369 ensembl transcript 7940 8969 . + . ID=Physo144991;Parent=Physo144991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_369 . exon 7940 7993 . + . ID=Physo144991.1;Parent=Physo144991;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_369 . exon 8015 8031 . + . ID=Physo144991.2;Parent=Physo144991;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_369 . exon 8124 8969 . + . ID=Physo144991.3;Parent=Physo144991;constitutive=1;ensembl_phase=-1;rank=3 scaffold_369 . CDS 8580 8969 . + 0 ID=Physo144991;Parent=Physo144991;rank=1 scaffold_369 ensembl protein_coding_gene 12577 13009 . + . ID=Physo144992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3690003;logic_name=jgi_physo1_1 scaffold_369 ensembl transcript 12577 13009 . + . ID=Physo144992;Parent=Physo144992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_369 . CDS 12577 12825 . + 0 ID=Physo144992;Parent=Physo144992;rank=1 scaffold_369 . exon 12577 12825 . + . ID=Physo144992.1;Parent=Physo144992;constitutive=1;rank=1 scaffold_369 . CDS 12882 13007 . + 0 ID=Physo144992;Parent=Physo144992;rank=2 scaffold_369 . exon 12882 13009 . + . ID=Physo144992.2;Parent=Physo144992;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_365 1 13083 scaffold_365 . repeat_region 773 1075 . ? . description=trf scaffold_365 . repeat_region 1161 4365 . ? . description=dust scaffold_365 . biological_region 4490 4491 0.999 + . logic_name=eponine scaffold_365 . repeat_region 4646 4824 . - . description=GypsyPi-1c_LTR scaffold_365 . repeat_region 4949 5271 . - . description=GypsyPi-1c_I-int scaffold_365 . biological_region 5202 5205 0.999 + . logic_name=eponine scaffold_365 . biological_region 5398 5404 0.999 + . logic_name=eponine scaffold_365 . repeat_region 5840 12547 . - . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_362 1 13118 scaffold_362 . repeat_region 40 87 . ? . description=trf scaffold_362 . repeat_region 423 471 . ? . description=trf scaffold_362 . repeat_region 1151 1369 . ? . description=trf scaffold_362 . repeat_region 1158 1369 . ? . description=trf scaffold_362 . repeat_region 1166 1369 . ? . description=trf scaffold_362 . repeat_region 4810 4829 . ? . description=dust scaffold_362 . biological_region 4880 4880 0.999 - . logic_name=eponine scaffold_362 ensembl protein_coding_gene 1026 1523 . + . ID=Physo125738;biotype=protein_coding;external_name=estExt_Genewise1.C_3620003;logic_name=jgi_physo1_1 scaffold_362 ensembl transcript 1026 1523 . + . ID=Physo125738;Parent=Physo125738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_362 . exon 1026 1211 . + . ID=Physo125738.1;Parent=Physo125738;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_362 . CDS 1027 1211 . + 0 ID=Physo125738;Parent=Physo125738;rank=1 scaffold_362 . CDS 1344 1452 . + 0 ID=Physo125738;Parent=Physo125738;rank=2 scaffold_362 . exon 1344 1523 . + . ID=Physo125738.2;Parent=Physo125738;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_362 ensembl protein_coding_gene 3157 5441 . + . ID=Physo144975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3620001;logic_name=jgi_physo1_1 scaffold_362 ensembl transcript 3157 5441 . + . ID=Physo144975;Parent=Physo144975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_362 . CDS 3157 3366 . + 0 ID=Physo144975;Parent=Physo144975;rank=1 scaffold_362 . exon 3157 3366 . + . ID=Physo144975.1;Parent=Physo144975;constitutive=1;rank=1 scaffold_362 . CDS 3468 3552 . + 0 ID=Physo144975;Parent=Physo144975;rank=2 scaffold_362 . exon 3468 3552 . + . ID=Physo144975.2;Parent=Physo144975;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_362 . CDS 3938 4377 . + 0 ID=Physo144975;Parent=Physo144975;rank=3 scaffold_362 . exon 3938 4377 . + . ID=Physo144975.3;Parent=Physo144975;constitutive=1;ensembl_phase=1;rank=3 scaffold_362 . CDS 4423 5380 . + 0 ID=Physo144975;Parent=Physo144975;rank=4 scaffold_362 . exon 4423 5380 . + . ID=Physo144975.4;Parent=Physo144975;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_362 . CDS 5431 5441 . + 0 ID=Physo144975;Parent=Physo144975;rank=5 scaffold_362 . exon 5431 5441 . + . ID=Physo144975.5;Parent=Physo144975;constitutive=1;ensembl_phase=1;rank=5 scaffold_362 ensembl protein_coding_gene 6143 8080 . + . ID=Physo144976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3620002;logic_name=jgi_physo1_1 scaffold_362 ensembl transcript 6143 8080 . + . ID=Physo144976;Parent=Physo144976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_362 . CDS 6143 6259 . + 0 ID=Physo144976;Parent=Physo144976;rank=1 scaffold_362 . exon 6143 6259 . + . ID=Physo144976.1;Parent=Physo144976;constitutive=1;rank=1 scaffold_362 . CDS 6342 6395 . + 0 ID=Physo144976;Parent=Physo144976;rank=2 scaffold_362 . exon 6342 6395 . + . ID=Physo144976.2;Parent=Physo144976;constitutive=1;rank=2 scaffold_362 . CDS 6526 7207 . + 0 ID=Physo144976;Parent=Physo144976;rank=3 scaffold_362 . exon 6526 7207 . + . ID=Physo144976.3;Parent=Physo144976;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_362 . CDS 7441 7727 . + 0 ID=Physo144976;Parent=Physo144976;rank=4 scaffold_362 . CDS 7790 8080 . + 0 ID=Physo144976;Parent=Physo144976;rank=5 scaffold_362 . exon 7441 7727 . + . ID=Physo144976.4;Parent=Physo144976;constitutive=1;ensembl_phase=1;rank=4 scaffold_362 . exon 7790 8080 . + . ID=Physo144976.5;Parent=Physo144976;constitutive=1;rank=5 scaffold_362 ensembl protein_coding_gene 8291 9177 . - . ID=Physo144977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3620003;logic_name=jgi_physo1_1 scaffold_362 ensembl transcript 8291 9177 . - . ID=Physo144977;Parent=Physo144977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_362 . CDS 8291 8418 . - 0 ID=Physo144977;Parent=Physo144977;rank=3 scaffold_362 . exon 8291 8418 . - . ID=Physo144977.3;Parent=Physo144977;constitutive=1;ensembl_phase=1;rank=3 scaffold_362 . CDS 8457 8950 . - 0 ID=Physo144977;Parent=Physo144977;rank=2 scaffold_362 . exon 8457 8950 . - . ID=Physo144977.2;Parent=Physo144977;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_362 . CDS 8987 9177 . - 0 ID=Physo144977;Parent=Physo144977;rank=1 scaffold_362 . exon 8987 9177 . - . ID=Physo144977.1;Parent=Physo144977;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_361 1 13162 scaffold_361 . repeat_region 1792 1807 . ? . description=dust scaffold_361 . biological_region 2453 2455 0.999 - . logic_name=eponine scaffold_361 . repeat_region 3826 3899 . ? . description=trf scaffold_361 . repeat_region 3827 3903 . ? . description=dust scaffold_361 . repeat_region 5223 5326 . ? . description=trf scaffold_361 . repeat_region 5223 5341 . ? . description=trf scaffold_361 ensembl protein_coding_gene 2118 2560 . - . ID=Physo144973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3610001;logic_name=jgi_physo1_1 scaffold_361 ensembl transcript 2118 2560 . - . ID=Physo144973;Parent=Physo144973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_361 . CDS 2118 2291 . - 0 ID=Physo144973;Parent=Physo144973;rank=3 scaffold_361 . exon 2118 2291 . - . ID=Physo144973.3;Parent=Physo144973;constitutive=1;rank=3 scaffold_361 . CDS 2374 2509 . - 0 ID=Physo144973;Parent=Physo144973;rank=2 scaffold_361 . exon 2374 2509 . - . ID=Physo144973.2;Parent=Physo144973;constitutive=1;ensembl_phase=2;rank=2 scaffold_361 . CDS 2544 2560 . - 0 ID=Physo144973;Parent=Physo144973;rank=1 scaffold_361 . exon 2544 2560 . - . ID=Physo144973.1;Parent=Physo144973;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_361 ensembl protein_coding_gene 5613 6537 . + . ID=Physo144974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3610002;logic_name=jgi_physo1_1 scaffold_361 ensembl transcript 5613 6537 . + . ID=Physo144974;Parent=Physo144974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_361 . CDS 5613 5876 . + 0 ID=Physo144974;Parent=Physo144974;rank=1 scaffold_361 . exon 5613 5876 . + . ID=Physo144974.1;Parent=Physo144974;constitutive=1;rank=1 scaffold_361 . CDS 6034 6273 . + 0 ID=Physo144974;Parent=Physo144974;rank=2 scaffold_361 . exon 6034 6273 . + . ID=Physo144974.2;Parent=Physo144974;constitutive=1;rank=2 scaffold_361 . CDS 6295 6537 . + 0 ID=Physo144974;Parent=Physo144974;rank=3 scaffold_361 . exon 6295 6537 . + . ID=Physo144974.3;Parent=Physo144974;constitutive=1;rank=3 scaffold_361 . repeat_region 6608 6849 . - . description=GypsyPi-1c_LTR scaffold_361 . repeat_region 9656 11314 . - . description=GypsyPi-1c_I-int scaffold_361 . repeat_region 11315 11610 . - . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_359 1 13196 scaffold_359 . biological_region 62 67 0.999 + . logic_name=eponine scaffold_359 . biological_region 109 113 0.999 - . logic_name=eponine scaffold_359 . biological_region 121 131 0.999 - . logic_name=eponine scaffold_359 . biological_region 153 157 0.999 - . logic_name=eponine scaffold_359 . biological_region 163 170 0.999 + . logic_name=eponine scaffold_359 . repeat_region 382 405 . ? . description=trf scaffold_359 . biological_region 464 466 0.999 - . logic_name=eponine scaffold_359 . repeat_region 547 554 . ? . description=dust scaffold_359 . biological_region 1300 1302 0.999 + . logic_name=eponine scaffold_359 . repeat_region 1360 1383 . ? . description=trf scaffold_359 . biological_region 1596 1603 0.999 - . logic_name=eponine scaffold_359 . biological_region 1609 1613 0.999 + . logic_name=eponine scaffold_359 . biological_region 1635 1645 0.999 + . logic_name=eponine scaffold_359 . biological_region 1652 1657 0.999 + . logic_name=eponine scaffold_359 . biological_region 1699 1704 0.999 - . logic_name=eponine scaffold_359 . biological_region 1777 1780 0.999 - . logic_name=eponine scaffold_359 . biological_region 1778 1785 0.999 + . logic_name=eponine scaffold_359 . biological_region 1860 1862 0.999 + . logic_name=eponine scaffold_359 . biological_region 2569 2572 0.999 - . logic_name=eponine scaffold_359 . repeat_region 2598 2622 . ? . description=trf scaffold_359 . biological_region 3729 3729 0.999 - . logic_name=eponine scaffold_359 . biological_region 3782 3786 0.999 + . logic_name=eponine scaffold_359 . biological_region 3822 3822 0.999 - . logic_name=eponine scaffold_359 . biological_region 4606 4612 0.999 - . logic_name=eponine scaffold_359 . biological_region 5650 5651 0.999 - . logic_name=eponine scaffold_359 . biological_region 5669 5675 0.999 - . logic_name=eponine scaffold_359 . biological_region 6140 6142 0.999 + . logic_name=eponine scaffold_359 ensembl protein_coding_gene 1477 2202 . - . ID=Physo144962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3590001;logic_name=jgi_physo1_1 scaffold_359 ensembl transcript 1477 2202 . - . ID=Physo144962;Parent=Physo144962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_359 . CDS 1477 2202 . - 0 ID=Physo144962;Parent=Physo144962;rank=1 scaffold_359 . exon 1477 2202 . - . ID=Physo144962.1;Parent=Physo144962;constitutive=1;rank=1 scaffold_359 ensembl protein_coding_gene 3432 4193 . - . ID=Physo144963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3590002;logic_name=jgi_physo1_1 scaffold_359 ensembl transcript 3432 4193 . - . ID=Physo144963;Parent=Physo144963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_359 . CDS 3432 4193 . - 0 ID=Physo144963;Parent=Physo144963;rank=1 scaffold_359 . exon 3432 4193 . - . ID=Physo144963.1;Parent=Physo144963;constitutive=1;rank=1 scaffold_359 ensembl protein_coding_gene 4935 5657 . - . ID=Physo144964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3590003;logic_name=jgi_physo1_1 scaffold_359 ensembl transcript 4935 5657 . - . ID=Physo144964;Parent=Physo144964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_359 . CDS 4935 5657 . - 0 ID=Physo144964;Parent=Physo144964;rank=1 scaffold_359 . exon 4935 5657 . - . ID=Physo144964.1;Parent=Physo144964;constitutive=1;rank=1 scaffold_359 ensembl protein_coding_gene 6595 8478 . - . ID=Physo158988;biotype=protein_coding;external_name=C_scaffold_359000002;logic_name=jgi_physo1_1 scaffold_359 ensembl transcript 6595 8478 . - . ID=Physo158988;Parent=Physo158988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_359 . CDS 6595 6826 . - 0 ID=Physo158988;Parent=Physo158988;rank=4 scaffold_359 . exon 6595 6826 . - . ID=Physo158988.4;Parent=Physo158988;constitutive=1;ensembl_phase=2;rank=4 scaffold_359 . CDS 6893 7390 . - 0 ID=Physo158988;Parent=Physo158988;rank=3 scaffold_359 . CDS 7820 8199 . - 0 ID=Physo158988;Parent=Physo158988;rank=2 scaffold_359 . CDS 8236 8478 . - 0 ID=Physo158988;Parent=Physo158988;rank=1 scaffold_359 ensembl protein_coding_gene 12003 13196 . - . ID=Physo144968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3590007;logic_name=jgi_physo1_1 scaffold_359 ensembl transcript 12003 13196 . - . ID=Physo144968;Parent=Physo144968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_359 . exon 12003 13196 . - . ID=Physo144968.1;Parent=Physo144968;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_359 . CDS 12018 13196 . - 0 ID=Physo144968;Parent=Physo144968;rank=1 scaffold_359 . exon 6893 7390 . - . ID=Physo158988.3;Parent=Physo158988;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_359 . exon 7820 8199 . - . ID=Physo158988.2;Parent=Physo158988;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_359 . exon 8236 8478 . - . ID=Physo158988.1;Parent=Physo158988;constitutive=1;rank=1 scaffold_359 ensembl protein_coding_gene 8826 11541 . + . ID=Physo158990;biotype=protein_coding;external_name=C_scaffold_359000004;logic_name=jgi_physo1_1 scaffold_359 ensembl transcript 8826 11541 . + . ID=Physo158990;Parent=Physo158990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_359 . CDS 8826 8924 . + 0 ID=Physo158990;Parent=Physo158990;rank=1 scaffold_359 . exon 8826 8924 . + . ID=Physo158990.1;Parent=Physo158990;constitutive=1;rank=1 scaffold_359 . CDS 8991 9190 . + 0 ID=Physo158990;Parent=Physo158990;rank=2 scaffold_359 . exon 8991 9190 . + . ID=Physo158990.2;Parent=Physo158990;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_359 . CDS 9267 9372 . + 0 ID=Physo158990;Parent=Physo158990;rank=3 scaffold_359 . exon 9267 9372 . + . ID=Physo158990.3;Parent=Physo158990;constitutive=1;ensembl_phase=2;rank=3 scaffold_359 . CDS 9533 9662 . + 0 ID=Physo158990;Parent=Physo158990;rank=4 scaffold_359 . exon 9533 9662 . + . ID=Physo158990.4;Parent=Physo158990;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_359 . CDS 9686 9790 . + 0 ID=Physo158990;Parent=Physo158990;rank=5 scaffold_359 . exon 9686 9790 . + . ID=Physo158990.5;Parent=Physo158990;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_359 . CDS 9818 9996 . + 0 ID=Physo158990;Parent=Physo158990;rank=6 scaffold_359 . exon 9818 9996 . + . ID=Physo158990.6;Parent=Physo158990;constitutive=1;ensembl_phase=1;rank=6 scaffold_359 . CDS 10051 10161 . + 0 ID=Physo158990;Parent=Physo158990;rank=7 scaffold_359 . exon 10051 10161 . + . ID=Physo158990.7;Parent=Physo158990;constitutive=1;rank=7 scaffold_359 . CDS 10245 10441 . + 0 ID=Physo158990;Parent=Physo158990;rank=8 scaffold_359 . exon 10245 10441 . + . ID=Physo158990.8;Parent=Physo158990;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_359 . CDS 10503 10542 . + 0 ID=Physo158990;Parent=Physo158990;rank=9 scaffold_359 . exon 10503 10542 . + . ID=Physo158990.9;Parent=Physo158990;constitutive=1;ensembl_phase=2;rank=9 scaffold_359 . CDS 10644 11502 . + 0 ID=Physo158990;Parent=Physo158990;rank=10 scaffold_359 . exon 10644 11502 . + . ID=Physo158990.10;Parent=Physo158990;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_359 . CDS 11528 11541 . + 0 ID=Physo158990;Parent=Physo158990;rank=11 scaffold_359 . exon 11528 11541 . + . ID=Physo158990.11;Parent=Physo158990;constitutive=1;ensembl_phase=1;rank=11 ##gff-version 3 ##sequence-region scaffold_358 1 13209 scaffold_358 . biological_region 578 584 0.999 + . logic_name=eponine scaffold_358 . biological_region 596 607 0.999 + . logic_name=eponine scaffold_358 . biological_region 654 656 0.999 + . logic_name=eponine scaffold_358 . biological_region 728 730 0.999 + . logic_name=eponine scaffold_358 . biological_region 790 792 0.999 - . logic_name=eponine scaffold_358 . biological_region 844 850 0.999 + . logic_name=eponine scaffold_358 . biological_region 883 887 0.999 + . logic_name=eponine scaffold_358 . biological_region 1003 1007 0.999 - . logic_name=eponine scaffold_358 . repeat_region 1192 1211 . ? . description=trf scaffold_358 . repeat_region 1277 6358 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_357 1 13214 scaffold_357 . repeat_region 2599 2606 . ? . description=dust scaffold_357 . repeat_region 4923 7848 . ? . description=dust scaffold_357 ensembl protein_coding_gene 2972 3496 . - . ID=Physo144958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3570001;logic_name=jgi_physo1_1 scaffold_357 ensembl transcript 2972 3496 . - . ID=Physo144958;Parent=Physo144958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_357 . CDS 2972 3496 . - 0 ID=Physo144958;Parent=Physo144958;rank=1 scaffold_357 . exon 2972 3496 . - . ID=Physo144958.1;Parent=Physo144958;constitutive=1;rank=1 scaffold_357 ensembl protein_coding_gene 4184 4843 . - . ID=Physo144959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3570002;logic_name=jgi_physo1_1 scaffold_357 ensembl transcript 4184 4843 . - . ID=Physo144959;Parent=Physo144959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_357 . CDS 4184 4843 . - 0 ID=Physo144959;Parent=Physo144959;rank=1 scaffold_357 . exon 4184 4843 . - . ID=Physo144959.1;Parent=Physo144959;constitutive=1;rank=1 scaffold_357 . biological_region 9456 9456 0.999 - . logic_name=eponine scaffold_357 ensembl protein_coding_gene 8951 9559 . - . ID=Physo144960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3570003;logic_name=jgi_physo1_1 scaffold_357 ensembl transcript 8951 9559 . - . ID=Physo144960;Parent=Physo144960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_357 . CDS 8951 9338 . - 0 ID=Physo144960;Parent=Physo144960;rank=2 scaffold_357 . exon 8951 9338 . - . ID=Physo144960.2;Parent=Physo144960;constitutive=1;ensembl_phase=2;rank=2 scaffold_357 . CDS 9381 9559 . - 0 ID=Physo144960;Parent=Physo144960;rank=1 scaffold_357 . exon 9381 9559 . - . ID=Physo144960.1;Parent=Physo144960;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_357 ensembl protein_coding_gene 10743 12457 . + . ID=Physo144961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3570004;logic_name=jgi_physo1_1 scaffold_357 ensembl transcript 10743 12457 . + . ID=Physo144961;Parent=Physo144961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_357 . CDS 10743 10802 . + 0 ID=Physo144961;Parent=Physo144961;rank=1 scaffold_357 . exon 10743 10802 . + . ID=Physo144961.1;Parent=Physo144961;constitutive=1;rank=1 scaffold_357 . CDS 11954 12457 . + 0 ID=Physo144961;Parent=Physo144961;rank=2 scaffold_357 . exon 11954 12457 . + . ID=Physo144961.2;Parent=Physo144961;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_363 1 13230 scaffold_363 . biological_region 624 628 0.999 + . logic_name=eponine scaffold_363 . biological_region 627 631 0.999 - . logic_name=eponine scaffold_363 . repeat_region 669 724 . ? . description=trf scaffold_363 . biological_region 674 676 0.999 - . logic_name=eponine scaffold_363 . biological_region 684 685 0.999 + . logic_name=eponine scaffold_363 . biological_region 687 690 0.999 - . logic_name=eponine scaffold_363 . repeat_region 1062 2117 . ? . description=dust scaffold_363 . biological_region 2488 2490 0.999 + . logic_name=eponine scaffold_363 . biological_region 2588 2593 0.999 - . logic_name=eponine scaffold_363 . repeat_region 2817 2859 . ? . description=trf scaffold_363 . biological_region 3287 3290 0.999 - . logic_name=eponine scaffold_363 . biological_region 3903 3911 0.999 + . logic_name=eponine scaffold_363 . biological_region 4438 4441 0.999 + . logic_name=eponine scaffold_363 . biological_region 4445 4447 0.999 - . logic_name=eponine scaffold_363 . biological_region 4483 4488 0.999 + . logic_name=eponine scaffold_363 . biological_region 4529 4539 0.999 - . logic_name=eponine scaffold_363 . biological_region 4579 4579 0.999 - . logic_name=eponine scaffold_363 . biological_region 4612 4612 0.999 - . logic_name=eponine scaffold_363 . biological_region 4759 4761 0.999 - . logic_name=eponine scaffold_363 . biological_region 5044 5049 0.999 + . logic_name=eponine scaffold_363 . biological_region 5602 5607 0.999 + . logic_name=eponine scaffold_363 . biological_region 5663 5667 0.999 + . logic_name=eponine scaffold_363 . biological_region 6116 6118 0.999 + . logic_name=eponine scaffold_363 . biological_region 6480 6480 0.999 - . logic_name=eponine scaffold_363 ensembl protein_coding_gene 64 2911 . - . ID=Physo144978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3630001;logic_name=jgi_physo1_1 scaffold_363 ensembl transcript 64 2911 . - . ID=Physo144978;Parent=Physo144978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_363 . CDS 64 1003 . - 0 ID=Physo144978;Parent=Physo144978;rank=2 scaffold_363 . exon 64 1003 . - . ID=Physo144978.2;Parent=Physo144978;constitutive=1;ensembl_phase=2;rank=2 scaffold_363 . CDS 2148 2911 . - 0 ID=Physo144978;Parent=Physo144978;rank=1 scaffold_363 . exon 2148 2911 . - . ID=Physo144978.1;Parent=Physo144978;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_363 ensembl protein_coding_gene 4245 6436 . - . ID=Physo144979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3630002;logic_name=jgi_physo1_1 scaffold_363 ensembl transcript 4245 6436 . - . ID=Physo144979;Parent=Physo144979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_363 . CDS 4245 5282 . - 0 ID=Physo144979;Parent=Physo144979;rank=2 scaffold_363 . exon 4245 5282 . - . ID=Physo144979.2;Parent=Physo144979;constitutive=1;rank=2 scaffold_363 . CDS 5312 6436 . - 0 ID=Physo144979;Parent=Physo144979;rank=1 scaffold_363 . exon 5312 6436 . - . ID=Physo144979.1;Parent=Physo144979;constitutive=1;rank=1 scaffold_363 ensembl protein_coding_gene 7586 10488 . + . ID=Physo144980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3630003;logic_name=jgi_physo1_1 scaffold_363 ensembl transcript 7586 10488 . + . ID=Physo144980;Parent=Physo144980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_363 . CDS 7586 8021 . + 0 ID=Physo144980;Parent=Physo144980;rank=1 scaffold_363 . exon 7586 8021 . + . ID=Physo144980.1;Parent=Physo144980;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_363 . CDS 8708 9688 . + 0 ID=Physo144980;Parent=Physo144980;rank=2 scaffold_363 . exon 8708 9688 . + . ID=Physo144980.2;Parent=Physo144980;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_363 . CDS 9920 10488 . + 0 ID=Physo144980;Parent=Physo144980;rank=3 scaffold_363 . exon 9920 10488 . + . ID=Physo144980.3;Parent=Physo144980;constitutive=1;ensembl_phase=1;rank=3 scaffold_363 ensembl protein_coding_gene 10680 11211 . - . ID=Physo144981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3630004;logic_name=jgi_physo1_1 scaffold_363 ensembl transcript 10680 11211 . - . ID=Physo144981;Parent=Physo144981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_363 . CDS 10680 10726 . - 0 ID=Physo144981;Parent=Physo144981;rank=2 scaffold_363 . exon 10680 10726 . - . ID=Physo144981.2;Parent=Physo144981;constitutive=1;ensembl_phase=1;rank=2 scaffold_363 . CDS 10854 11211 . - 0 ID=Physo144981;Parent=Physo144981;rank=1 scaffold_363 . exon 10854 11211 . - . ID=Physo144981.1;Parent=Physo144981;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_355 1 13271 scaffold_355 . biological_region 370 375 0.999 - . logic_name=eponine scaffold_355 . biological_region 2459 2463 0.999 + . logic_name=eponine scaffold_355 . repeat_region 8232 8242 . ? . description=dust scaffold_355 . repeat_region 8805 8824 . ? . description=trf scaffold_355 . repeat_region 9672 9710 . ? . description=trf scaffold_355 . repeat_region 9706 9776 . ? . description=trf scaffold_355 . repeat_region 9706 9776 . ? . description=dust scaffold_355 . repeat_region 9706 9776 . + . description=(TC)n ##gff-version 3 ##sequence-region scaffold_354 1 13296 scaffold_354 . biological_region 269 270 0.999 + . logic_name=eponine scaffold_354 . biological_region 828 829 0.999 - . logic_name=eponine scaffold_354 . repeat_region 3098 3416 . ? . description=dust scaffold_354 ensembl protein_coding_gene 29 1149 . + . ID=Physo109692;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_3540001;logic_name=jgi_physo1_1 scaffold_354 ensembl transcript 29 1149 . + . ID=Physo109692;Parent=Physo109692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_354 . exon 29 1149 . + . ID=Physo109692.1;Parent=Physo109692;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_354 . CDS 50 1006 . + 0 ID=Physo109692;Parent=Physo109692;rank=1 scaffold_354 ensembl protein_coding_gene 1506 2111 . - . ID=Physo125730;biotype=protein_coding;external_name=estExt_Genewise1.C_3540006;logic_name=jgi_physo1_1 scaffold_354 ensembl transcript 1506 2111 . - . ID=Physo125730;Parent=Physo125730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_354 . exon 1506 2111 . - . ID=Physo125730.1;Parent=Physo125730;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_354 . CDS 1740 2111 . - 0 ID=Physo125730;Parent=Physo125730;rank=1 scaffold_354 ensembl protein_coding_gene 2528 6503 . - . ID=Physo144956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3540002;logic_name=jgi_physo1_1 scaffold_354 ensembl transcript 2528 6503 . - . ID=Physo144956;Parent=Physo144956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_354 . CDS 2528 3064 . - 0 ID=Physo144956;Parent=Physo144956;rank=4 scaffold_354 . exon 2528 3064 . - . ID=Physo144956.4;Parent=Physo144956;constitutive=1;rank=4 scaffold_354 . CDS 3420 5727 . - 0 ID=Physo144956;Parent=Physo144956;rank=3 scaffold_354 . exon 3420 5727 . - . ID=Physo144956.3;Parent=Physo144956;constitutive=1;ensembl_phase=2;rank=3 scaffold_354 . CDS 5816 6218 . - 0 ID=Physo144956;Parent=Physo144956;rank=2 scaffold_354 . exon 5816 6218 . - . ID=Physo144956.2;Parent=Physo144956;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_354 . CDS 6248 6503 . - 0 ID=Physo144956;Parent=Physo144956;rank=1 scaffold_354 . exon 6248 6503 . - . ID=Physo144956.1;Parent=Physo144956;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_354 . repeat_region 6939 6975 . ? . description=trf scaffold_354 . repeat_region 6939 6976 . ? . description=trf scaffold_354 . repeat_region 7172 7199 . ? . description=trf scaffold_354 . repeat_region 8718 8770 . + . description=(CGAGT)n scaffold_354 . repeat_region 12663 12717 . ? . description=trf scaffold_354 ensembl protein_coding_gene 9099 10064 . - . ID=Physo125727;biotype=protein_coding;external_name=estExt_Genewise1.C_3540003;logic_name=jgi_physo1_1 scaffold_354 ensembl transcript 9099 10064 . - . ID=Physo125727;Parent=Physo125727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_354 . CDS 9099 10010 . - 0 ID=Physo125727;Parent=Physo125727;rank=1 scaffold_354 . exon 9099 10064 . - . ID=Physo125727.1;Parent=Physo125727;constitutive=1;ensembl_phase=-1;rank=1 scaffold_354 ensembl protein_coding_gene 11198 11506 . - . ID=Physo144957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3540003;logic_name=jgi_physo1_1 scaffold_354 ensembl transcript 11198 11506 . - . ID=Physo144957;Parent=Physo144957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_354 . CDS 11198 11506 . - 0 ID=Physo144957;Parent=Physo144957;rank=1 scaffold_354 . exon 11198 11506 . - . ID=Physo144957.1;Parent=Physo144957;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_356 1 13319 scaffold_356 . repeat_region 232 255 . ? . description=trf scaffold_356 . repeat_region 906 3670 . ? . description=dust scaffold_356 . repeat_region 4890 5792 . ? . description=dust scaffold_356 . repeat_region 6054 6077 . ? . description=trf scaffold_356 . biological_region 6636 6640 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_368 1 13392 scaffold_368 . repeat_region 193 243 . ? . description=dust scaffold_368 . repeat_region 1103 1152 . ? . description=dust scaffold_368 . biological_region 2344 2348 0.999 + . logic_name=eponine scaffold_368 . repeat_region 2528 2577 . ? . description=dust scaffold_368 . biological_region 3358 3362 0.999 - . logic_name=eponine scaffold_368 . biological_region 3920 3921 0.999 + . logic_name=eponine scaffold_368 . repeat_region 4015 4179 . ? . description=dust scaffold_368 . repeat_region 5845 6036 . ? . description=trf scaffold_368 . repeat_region 6210 6259 . ? . description=dust scaffold_368 ensembl protein_coding_gene 9301 11125 . - . ID=Physo144989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3680001;logic_name=jgi_physo1_1 scaffold_368 ensembl transcript 9301 11125 . - . ID=Physo144989;Parent=Physo144989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_368 . CDS 9301 9426 . - 0 ID=Physo144989;Parent=Physo144989;rank=4 scaffold_368 . exon 9301 9426 . - . ID=Physo144989.4;Parent=Physo144989;constitutive=1;rank=4 scaffold_368 . CDS 10222 10392 . - 0 ID=Physo144989;Parent=Physo144989;rank=3 scaffold_368 . exon 10222 10392 . - . ID=Physo144989.3;Parent=Physo144989;constitutive=1;rank=3 scaffold_368 . CDS 10452 10518 . - 0 ID=Physo144989;Parent=Physo144989;rank=2 scaffold_368 . exon 10452 10518 . - . ID=Physo144989.2;Parent=Physo144989;constitutive=1;ensembl_phase=2;rank=2 scaffold_368 . CDS 10752 11125 . - 0 ID=Physo144989;Parent=Physo144989;rank=1 scaffold_368 . exon 10752 11125 . - . ID=Physo144989.1;Parent=Physo144989;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_353 1 13420 scaffold_353 . biological_region 9147 9151 0.999 + . logic_name=eponine scaffold_353 . biological_region 9294 9299 0.999 - . logic_name=eponine scaffold_353 . biological_region 9317 9324 0.999 - . logic_name=eponine scaffold_353 . biological_region 9402 9403 0.999 - . logic_name=eponine scaffold_353 . repeat_region 9457 9736 . ? . description=dust scaffold_353 . biological_region 9824 9824 0.999 + . logic_name=eponine scaffold_353 . biological_region 9834 9837 0.999 + . logic_name=eponine scaffold_353 . biological_region 9984 9988 0.999 - . logic_name=eponine scaffold_353 . biological_region 11853 11853 0.999 + . logic_name=eponine scaffold_353 . repeat_region 12089 12122 . ? . description=trf scaffold_353 . biological_region 13007 13011 0.999 + . logic_name=eponine scaffold_353 . biological_region 13158 13161 0.999 - . logic_name=eponine scaffold_353 . biological_region 13171 13171 0.999 - . logic_name=eponine scaffold_353 . biological_region 13332 13335 0.999 - . logic_name=eponine scaffold_353 . biological_region 13356 13358 0.999 - . logic_name=eponine scaffold_353 ensembl protein_coding_gene 12835 13420 . + . ID=Physo125724;biotype=protein_coding;external_name=estExt_Genewise1.C_3530007;logic_name=jgi_physo1_1 scaffold_353 ensembl transcript 12835 13420 . + . ID=Physo125724;Parent=Physo125724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_353 . CDS 12835 13419 . + 0 ID=Physo125724;Parent=Physo125724;rank=1 scaffold_353 . exon 12835 13420 . + . ID=Physo125724.1;Parent=Physo125724;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_353 ensembl protein_coding_gene 8941 11963 . - . ID=Physo144953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3530001;logic_name=jgi_physo1_1 scaffold_353 ensembl transcript 8941 11963 . - . ID=Physo144953;Parent=Physo144953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_353 . exon 8941 9449 . - . ID=Physo144953.7;Parent=Physo144953;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_353 . CDS 9021 9449 . - 0 ID=Physo144953;Parent=Physo144953;rank=7 scaffold_353 . CDS 9739 10108 . - 0 ID=Physo144953;Parent=Physo144953;rank=6 scaffold_353 . exon 9739 10108 . - . ID=Physo144953.6;Parent=Physo144953;constitutive=1;ensembl_phase=2;rank=6 scaffold_353 . CDS 10497 10543 . - 0 ID=Physo144953;Parent=Physo144953;rank=5 scaffold_353 . exon 10497 10543 . - . ID=Physo144953.5;Parent=Physo144953;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_353 . CDS 10584 11261 . - 0 ID=Physo144953;Parent=Physo144953;rank=4 scaffold_353 . exon 10584 11261 . - . ID=Physo144953.4;Parent=Physo144953;constitutive=1;rank=4 scaffold_353 . CDS 11284 11307 . - 0 ID=Physo144953;Parent=Physo144953;rank=3 scaffold_353 . exon 11284 11307 . - . ID=Physo144953.3;Parent=Physo144953;constitutive=1;rank=3 scaffold_353 . CDS 11342 11545 . - 0 ID=Physo144953;Parent=Physo144953;rank=2 scaffold_353 . exon 11342 11545 . - . ID=Physo144953.2;Parent=Physo144953;constitutive=1;rank=2 scaffold_353 . CDS 11628 11963 . - 0 ID=Physo144953;Parent=Physo144953;rank=1 scaffold_353 . exon 11628 11963 . - . ID=Physo144953.1;Parent=Physo144953;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_349 1 13467 scaffold_349 . repeat_region 989 1837 . ? . description=dust scaffold_349 . biological_region 2958 2960 0.999 + . logic_name=eponine scaffold_349 . repeat_region 3111 4718 . ? . description=dust scaffold_349 . repeat_region 5080 5130 . ? . description=trf scaffold_349 . repeat_region 5080 5132 . ? . description=trf scaffold_349 . repeat_region 5172 5202 . ? . description=trf scaffold_349 . repeat_region 5207 5244 . ? . description=trf scaffold_349 ensembl protein_coding_gene 25 4933 . - . ID=Physo144950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3490001;logic_name=jgi_physo1_1 scaffold_349 ensembl transcript 25 4933 . - . ID=Physo144950;Parent=Physo144950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_349 . exon 25 425 . - . ID=Physo144950.3;Parent=Physo144950;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_349 . CDS 26 425 . - 0 ID=Physo144950;Parent=Physo144950;rank=3 scaffold_349 . CDS 1843 3074 . - 0 ID=Physo144950;Parent=Physo144950;rank=2 scaffold_349 . exon 1843 3074 . - . ID=Physo144950.2;Parent=Physo144950;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_349 . CDS 4733 4933 . - 0 ID=Physo144950;Parent=Physo144950;rank=1 scaffold_349 . exon 4733 4933 . - . ID=Physo144950.1;Parent=Physo144950;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_348 1 13540 scaffold_348 . repeat_region 241 255 . ? . description=dust scaffold_348 . repeat_region 1101 2888 . ? . description=dust scaffold_348 . repeat_region 3415 3468 . ? . description=trf scaffold_348 . repeat_region 4177 4222 . ? . description=dust scaffold_348 . repeat_region 4177 4222 . ? . description=trf scaffold_348 . repeat_region 4177 4222 . + . description=(CTA)n ##gff-version 3 ##sequence-region scaffold_352 1 13553 scaffold_352 . repeat_region 925 980 . ? . description=trf scaffold_352 . repeat_region 1431 1606 . ? . description=dust scaffold_352 . repeat_region 3634 3657 . ? . description=dust scaffold_352 . repeat_region 4350 4363 . ? . description=dust scaffold_352 . biological_region 6550 6553 0.999 + . logic_name=eponine scaffold_352 ensembl protein_coding_gene 3692 4089 . + . ID=Physo125717;biotype=protein_coding;description=PsAvh186a1 [Source:physo1_jgi_v1.1%3BAcc:125717];external_name=estExt_Genewise1.C_3520001;logic_name=jgi_physo1_1 scaffold_352 ensembl transcript 3692 4089 . + . ID=Physo125717;Parent=Physo125717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_352 . exon 3692 4089 . + . ID=Physo125717.1;Parent=Physo125717;constitutive=1;ensembl_phase=-1;rank=1 scaffold_352 . CDS 3865 4089 . + 0 ID=Physo125717;Parent=Physo125717;rank=1 scaffold_352 ensembl protein_coding_gene 795 1741 . - . ID=Physo144952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3520001;logic_name=jgi_physo1_1 scaffold_352 ensembl transcript 795 1741 . - . ID=Physo144952;Parent=Physo144952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_352 . CDS 795 1241 . - 0 ID=Physo144952;Parent=Physo144952;rank=3 scaffold_352 . exon 795 1241 . - . ID=Physo144952.3;Parent=Physo144952;constitutive=1;rank=3 scaffold_352 . CDS 1262 1338 . - 0 ID=Physo144952;Parent=Physo144952;rank=2 scaffold_352 . exon 1262 1338 . - . ID=Physo144952.2;Parent=Physo144952;constitutive=1;ensembl_phase=1;rank=2 scaffold_352 . CDS 1717 1741 . - 0 ID=Physo144952;Parent=Physo144952;rank=1 scaffold_352 . exon 1717 1741 . - . ID=Physo144952.1;Parent=Physo144952;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_351 1 13570 scaffold_351 . biological_region 587 587 0.999 + . logic_name=eponine scaffold_351 . biological_region 1233 1239 0.999 - . logic_name=eponine scaffold_351 . repeat_region 1587 3876 . ? . description=dust scaffold_351 . repeat_region 4631 4704 . ? . description=dust scaffold_351 . repeat_region 4635 4685 . ? . description=trf scaffold_351 . repeat_region 4655 4713 . ? . description=trf scaffold_351 ensembl protein_coding_gene 8570 9361 . - . ID=Physo144951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3510001;logic_name=jgi_physo1_1 scaffold_351 ensembl transcript 8570 9361 . - . ID=Physo144951;Parent=Physo144951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_351 . CDS 8570 9361 . - 0 ID=Physo144951;Parent=Physo144951;rank=1 scaffold_351 . exon 8570 9361 . - . ID=Physo144951.1;Parent=Physo144951;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_346 1 13572 scaffold_346 . repeat_region 981 5228 . ? . description=dust scaffold_346 ensembl protein_coding_gene 153 804 . - . ID=Physo144944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3460001;logic_name=jgi_physo1_1 scaffold_346 ensembl transcript 153 804 . - . ID=Physo144944;Parent=Physo144944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_346 . exon 153 804 . - . ID=Physo144944.1;Parent=Physo144944;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_346 . CDS 154 804 . - 0 ID=Physo144944;Parent=Physo144944;rank=1 scaffold_346 . repeat_region 8370 8405 . ? . description=trf scaffold_346 . repeat_region 8466 8518 . ? . description=trf scaffold_346 . repeat_region 8466 8518 . ? . description=trf scaffold_346 . biological_region 10172 10176 0.999 - . logic_name=eponine scaffold_346 . repeat_region 11983 12324 . ? . description=trf scaffold_346 . biological_region 12045 12047 0.999 + . logic_name=eponine scaffold_346 . biological_region 12216 12218 0.999 + . logic_name=eponine scaffold_346 . repeat_region 12437 12472 . ? . description=trf scaffold_346 . repeat_region 12477 12507 . ? . description=trf scaffold_346 ensembl protein_coding_gene 8665 12374 . + . ID=Physo144945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3460002;logic_name=jgi_physo1_1 scaffold_346 ensembl transcript 8665 12374 . + . ID=Physo144945;Parent=Physo144945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_346 . CDS 8665 8901 . + 0 ID=Physo144945;Parent=Physo144945;rank=1 scaffold_346 . exon 8665 8901 . + . ID=Physo144945.1;Parent=Physo144945;constitutive=1;rank=1 scaffold_346 . CDS 9521 10276 . + 0 ID=Physo144945;Parent=Physo144945;rank=2 scaffold_346 . exon 9521 10276 . + . ID=Physo144945.2;Parent=Physo144945;constitutive=1;rank=2 scaffold_346 . CDS 11595 12374 . + 0 ID=Physo144945;Parent=Physo144945;rank=3 scaffold_346 . exon 11595 12374 . + . ID=Physo144945.3;Parent=Physo144945;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_347 1 13581 scaffold_347 . biological_region 949 954 0.999 + . logic_name=eponine scaffold_347 . repeat_region 961 1024 . ? . description=dust scaffold_347 . biological_region 1026 1035 0.999 - . logic_name=eponine scaffold_347 . biological_region 1050 1059 0.999 - . logic_name=eponine scaffold_347 . biological_region 1105 1113 0.999 + . logic_name=eponine scaffold_347 . biological_region 1123 1125 0.999 - . logic_name=eponine scaffold_347 . biological_region 1133 1139 0.999 + . logic_name=eponine scaffold_347 . biological_region 1144 1147 0.999 - . logic_name=eponine scaffold_347 . biological_region 1152 1157 0.999 + . logic_name=eponine scaffold_347 . biological_region 1205 1225 0.999 - . logic_name=eponine scaffold_347 . repeat_region 1807 2002 . ? . description=trf scaffold_347 . repeat_region 3916 3936 . ? . description=trf scaffold_347 . repeat_region 4143 5147 . ? . description=dust scaffold_347 . repeat_region 6684 6892 . ? . description=trf scaffold_347 ensembl protein_coding_gene 39 419 . + . ID=Physo144946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3470001;logic_name=jgi_physo1_1 scaffold_347 ensembl transcript 39 419 . + . ID=Physo144946;Parent=Physo144946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_347 . CDS 39 419 . + 0 ID=Physo144946;Parent=Physo144946;rank=1 scaffold_347 . exon 39 419 . + . ID=Physo144946.1;Parent=Physo144946;constitutive=1;rank=1 scaffold_347 ensembl protein_coding_gene 953 7305 . + . ID=Physo144947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3470002;logic_name=jgi_physo1_1 scaffold_347 ensembl transcript 953 7305 . + . ID=Physo144947;Parent=Physo144947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_347 . CDS 953 2800 . + 0 ID=Physo144947;Parent=Physo144947;rank=1 scaffold_347 . exon 953 2800 . + . ID=Physo144947.1;Parent=Physo144947;constitutive=1;rank=1 scaffold_347 . CDS 3087 4010 . + 0 ID=Physo144947;Parent=Physo144947;rank=2 scaffold_347 . exon 3087 4010 . + . ID=Physo144947.2;Parent=Physo144947;constitutive=1;rank=2 scaffold_347 . CDS 5424 7196 . + 0 ID=Physo144947;Parent=Physo144947;rank=3 scaffold_347 . exon 5424 7305 . + . ID=Physo144947.3;Parent=Physo144947;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_347 ensembl protein_coding_gene 12359 13042 . - . ID=Physo125708;biotype=protein_coding;external_name=estExt_Genewise1.C_3470010;logic_name=jgi_physo1_1 scaffold_347 ensembl transcript 12359 13042 . - . ID=Physo125708;Parent=Physo125708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_347 . exon 12359 13042 . - . ID=Physo125708.1;Parent=Physo125708;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_347 . CDS 12409 12945 . - 0 ID=Physo125708;Parent=Physo125708;rank=1 scaffold_347 ensembl protein_coding_gene 7459 7917 . + . ID=Physo144948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3470003;logic_name=jgi_physo1_1 scaffold_347 ensembl transcript 7459 7917 . + . ID=Physo144948;Parent=Physo144948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_347 . CDS 7459 7917 . + 0 ID=Physo144948;Parent=Physo144948;rank=1 scaffold_347 . exon 7459 7917 . + . ID=Physo144948.1;Parent=Physo144948;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_344 1 13609 scaffold_344 . repeat_region 231 266 . ? . description=trf scaffold_344 . repeat_region 268 301 . ? . description=trf scaffold_344 . repeat_region 341 393 . ? . description=trf scaffold_344 . repeat_region 341 393 . ? . description=trf scaffold_344 . repeat_region 1166 2172 . ? . description=dust scaffold_344 . biological_region 2713 2713 0.999 + . logic_name=eponine scaffold_344 . repeat_region 3332 5633 . ? . description=dust scaffold_344 . repeat_region 5880 5915 . ? . description=trf scaffold_344 . repeat_region 5976 6028 . ? . description=trf scaffold_344 . repeat_region 5976 6028 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_343 1 13644 scaffold_343 . biological_region 2454 2457 0.999 - . logic_name=eponine scaffold_343 . repeat_region 4445 4494 . ? . description=dust scaffold_343 . repeat_region 5834 5841 . ? . description=dust scaffold_343 ensembl protein_coding_gene 147 1034 . + . ID=Physo144938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3430001;logic_name=jgi_physo1_1 scaffold_343 ensembl transcript 147 1034 . + . ID=Physo144938;Parent=Physo144938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_343 . CDS 147 1034 . + 0 ID=Physo144938;Parent=Physo144938;rank=1 scaffold_343 . exon 147 1034 . + . ID=Physo144938.1;Parent=Physo144938;constitutive=1;rank=1 scaffold_343 ensembl protein_coding_gene 2917 3508 . + . ID=Physo144939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3430002;logic_name=jgi_physo1_1 scaffold_343 ensembl transcript 2917 3508 . + . ID=Physo144939;Parent=Physo144939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_343 . CDS 2917 3312 . + 0 ID=Physo144939;Parent=Physo144939;rank=1 scaffold_343 . exon 2917 3312 . + . ID=Physo144939.1;Parent=Physo144939;constitutive=1;rank=1 scaffold_343 . CDS 3449 3508 . + 0 ID=Physo144939;Parent=Physo144939;rank=2 scaffold_343 . exon 3449 3508 . + . ID=Physo144939.2;Parent=Physo144939;constitutive=1;rank=2 scaffold_343 ensembl protein_coding_gene 11725 12651 . + . ID=Physo144940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3430003;logic_name=jgi_physo1_1 scaffold_343 ensembl transcript 11725 12651 . + . ID=Physo144940;Parent=Physo144940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_343 . exon 11725 12651 . + . ID=Physo144940.1;Parent=Physo144940;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_343 . CDS 11726 12436 . + 0 ID=Physo144940;Parent=Physo144940;rank=1 ##gff-version 3 ##sequence-region scaffold_345 1 13737 scaffold_345 . repeat_region 2760 2800 . ? . description=trf scaffold_345 . repeat_region 4926 4975 . ? . description=dust scaffold_345 . repeat_region 4999 5038 . ? . description=trf scaffold_345 . repeat_region 5407 5520 . ? . description=trf scaffold_345 . repeat_region 6076 6189 . ? . description=trf scaffold_345 . repeat_region 6080 6189 . ? . description=dust scaffold_345 ensembl protein_coding_gene 19 405 . - . ID=Physo125689;biotype=protein_coding;external_name=estExt_Genewise1.C_3450002;logic_name=jgi_physo1_1 scaffold_345 ensembl transcript 19 405 . - . ID=Physo125689;Parent=Physo125689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_345 . CDS 19 384 . - 0 ID=Physo125689;Parent=Physo125689;rank=1 scaffold_345 . exon 19 405 . - . ID=Physo125689.1;Parent=Physo125689;constitutive=1;ensembl_phase=-1;rank=1 scaffold_345 ensembl protein_coding_gene 1351 1935 . - . ID=Physo125693;biotype=protein_coding;external_name=estExt_Genewise1.C_3450006;logic_name=jgi_physo1_1 scaffold_345 ensembl transcript 1351 1935 . - . ID=Physo125693;Parent=Physo125693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_345 . CDS 1351 1911 . - 0 ID=Physo125693;Parent=Physo125693;rank=1 scaffold_345 . exon 1351 1935 . - . ID=Physo125693.1;Parent=Physo125693;constitutive=1;ensembl_phase=-1;rank=1 scaffold_345 ensembl protein_coding_gene 2691 3683 . - . ID=Physo144941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3450001;logic_name=jgi_physo1_1 scaffold_345 ensembl transcript 2691 3683 . - . ID=Physo144941;Parent=Physo144941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_345 . CDS 2691 3683 . - 0 ID=Physo144941;Parent=Physo144941;rank=1 scaffold_345 . exon 2691 3683 . - . ID=Physo144941.1;Parent=Physo144941;constitutive=1;rank=1 scaffold_345 ensembl protein_coding_gene 5841 6254 . - . ID=Physo144942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3450002;logic_name=jgi_physo1_1 scaffold_345 ensembl transcript 5841 6254 . - . ID=Physo144942;Parent=Physo144942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_345 . CDS 5841 6254 . - 0 ID=Physo144942;Parent=Physo144942;rank=1 scaffold_345 . exon 5841 6254 . - . ID=Physo144942.1;Parent=Physo144942;constitutive=1;rank=1 scaffold_345 . repeat_region 8381 8943 . + . description=GypsyPi-1c_I-int scaffold_345 . biological_region 8487 8489 0.999 + . logic_name=eponine scaffold_345 . biological_region 8744 8748 0.999 + . logic_name=eponine scaffold_345 . biological_region 8764 8766 0.999 - . logic_name=eponine scaffold_345 . repeat_region 10662 11306 . + . description=GypsyPi-1c_I-int scaffold_345 . biological_region 10768 10770 0.999 + . logic_name=eponine scaffold_345 . biological_region 11025 11029 0.999 + . logic_name=eponine scaffold_345 . biological_region 11045 11047 0.999 - . logic_name=eponine scaffold_345 . repeat_region 11542 13731 . + . description=GypsyPi-1c_I-int scaffold_345 . biological_region 13060 13062 0.999 - . logic_name=eponine scaffold_345 ensembl protein_coding_gene 10629 13734 . + . ID=Physo144943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3450003;logic_name=jgi_physo1_1 scaffold_345 ensembl transcript 10629 13734 . + . ID=Physo144943;Parent=Physo144943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_345 . CDS 10629 11258 . + 0 ID=Physo144943;Parent=Physo144943;rank=1 scaffold_345 . exon 10629 11258 . + . ID=Physo144943.1;Parent=Physo144943;constitutive=1;rank=1 scaffold_345 . CDS 11407 11984 . + 0 ID=Physo144943;Parent=Physo144943;rank=2 scaffold_345 . exon 11407 11984 . + . ID=Physo144943.2;Parent=Physo144943;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_345 . CDS 12231 12630 . + 0 ID=Physo144943;Parent=Physo144943;rank=3 scaffold_345 . exon 12231 12630 . + . ID=Physo144943.3;Parent=Physo144943;constitutive=1;ensembl_phase=2;rank=3 scaffold_345 . CDS 12652 13734 . + 0 ID=Physo144943;Parent=Physo144943;rank=4 scaffold_345 . exon 12652 13734 . + . ID=Physo144943.4;Parent=Physo144943;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_340 1 13862 scaffold_340 . repeat_region 1288 5002 . ? . description=dust scaffold_340 . repeat_region 5828 5910 . ? . description=dust scaffold_340 . repeat_region 5829 5888 . ? . description=trf scaffold_340 . repeat_region 5829 5909 . ? . description=trf scaffold_340 . repeat_region 6731 6783 . ? . description=trf scaffold_340 ensembl protein_coding_gene 304 1185 . - . ID=Physo109691;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_3400001;logic_name=jgi_physo1_1 scaffold_340 ensembl transcript 304 1185 . - . ID=Physo109691;Parent=Physo109691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_340 . CDS 304 1185 . - 0 ID=Physo109691;Parent=Physo109691;rank=1 scaffold_340 . exon 304 1185 . - . ID=Physo109691.1;Parent=Physo109691;constitutive=1;rank=1 scaffold_340 ensembl protein_coding_gene 5361 6131 . - . ID=Physo144928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3400002;logic_name=jgi_physo1_1 scaffold_340 ensembl transcript 5361 6131 . - . ID=Physo144928;Parent=Physo144928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_340 . CDS 5361 6131 . - 0 ID=Physo144928;Parent=Physo144928;rank=1 scaffold_340 . exon 5361 6131 . - . ID=Physo144928.1;Parent=Physo144928;constitutive=1;rank=1 scaffold_340 ensembl protein_coding_gene 7631 8393 . - . ID=Physo144929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3400003;logic_name=jgi_physo1_1 scaffold_340 ensembl transcript 7631 8393 . - . ID=Physo144929;Parent=Physo144929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_340 . CDS 7631 8228 . - 0 ID=Physo144929;Parent=Physo144929;rank=2 scaffold_340 . exon 7631 8228 . - . ID=Physo144929.2;Parent=Physo144929;constitutive=1;ensembl_phase=2;rank=2 scaffold_340 . CDS 8263 8393 . - 0 ID=Physo144929;Parent=Physo144929;rank=1 scaffold_340 . exon 8263 8393 . - . ID=Physo144929.1;Parent=Physo144929;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_340 ensembl protein_coding_gene 13295 13843 . + . ID=Physo144930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3400004;logic_name=jgi_physo1_1 scaffold_340 ensembl transcript 13295 13843 . + . ID=Physo144930;Parent=Physo144930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_340 . CDS 13295 13843 . + 0 ID=Physo144930;Parent=Physo144930;rank=1 scaffold_340 . exon 13295 13843 . + . ID=Physo144930.1;Parent=Physo144930;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_342 1 13899 scaffold_342 . biological_region 26 30 0.999 + . logic_name=eponine scaffold_342 . biological_region 728 728 0.999 + . logic_name=eponine scaffold_342 . repeat_region 1869 1903 . ? . description=trf scaffold_342 . repeat_region 1904 5418 . ? . description=dust scaffold_342 ensembl protein_coding_gene 8 385 . - . ID=Physo144935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3420001;logic_name=jgi_physo1_1 scaffold_342 ensembl transcript 8 385 . - . ID=Physo144935;Parent=Physo144935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_342 . CDS 8 385 . - 0 ID=Physo144935;Parent=Physo144935;rank=1 scaffold_342 . exon 8 385 . - . ID=Physo144935.1;Parent=Physo144935;constitutive=1;rank=1 scaffold_342 ensembl protein_coding_gene 12438 13607 . - . ID=Physo125685;biotype=protein_coding;external_name=estExt_Genewise1.C_3420005;logic_name=jgi_physo1_1 scaffold_342 ensembl transcript 12438 13607 . - . ID=Physo125685;Parent=Physo125685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_342 . CDS 12438 13430 . - 0 ID=Physo125685;Parent=Physo125685;rank=1 scaffold_342 . exon 12438 13607 . - . ID=Physo125685.1;Parent=Physo125685;constitutive=1;ensembl_phase=-1;rank=1 scaffold_342 ensembl protein_coding_gene 8013 11760 . + . ID=Physo144936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3420002;logic_name=jgi_physo1_1 scaffold_342 ensembl transcript 8013 11760 . + . ID=Physo144936;Parent=Physo144936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_342 . CDS 8013 8881 . + 0 ID=Physo144936;Parent=Physo144936;rank=1 scaffold_342 . exon 8013 8881 . + . ID=Physo144936.1;Parent=Physo144936;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_342 . CDS 9062 10550 . + 0 ID=Physo144936;Parent=Physo144936;rank=2 scaffold_342 . exon 9062 10550 . + . ID=Physo144936.2;Parent=Physo144936;constitutive=1;ensembl_phase=2;rank=2 scaffold_342 . CDS 10687 10703 . + 0 ID=Physo144936;Parent=Physo144936;rank=3 scaffold_342 . exon 10687 10703 . + . ID=Physo144936.3;Parent=Physo144936;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_342 . CDS 10781 11343 . + 0 ID=Physo144936;Parent=Physo144936;rank=4 scaffold_342 . exon 10781 11343 . + . ID=Physo144936.4;Parent=Physo144936;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_342 . CDS 11738 11760 . + 0 ID=Physo144936;Parent=Physo144936;rank=5 scaffold_342 . exon 11738 11760 . + . ID=Physo144936.5;Parent=Physo144936;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_341 1 13919 scaffold_341 . biological_region 754 756 0.999 - . logic_name=eponine scaffold_341 . biological_region 783 784 0.999 - . logic_name=eponine scaffold_341 . repeat_region 841 889 . ? . description=trf scaffold_341 . repeat_region 1098 1147 . ? . description=dust scaffold_341 . biological_region 1707 1709 0.999 - . logic_name=eponine scaffold_341 . biological_region 2023 2026 0.999 - . logic_name=eponine scaffold_341 . repeat_region 2782 2831 . ? . description=dust scaffold_341 . repeat_region 2836 2857 . ? . description=dust scaffold_341 . repeat_region 2836 2861 . ? . description=trf scaffold_341 . repeat_region 3183 3200 . ? . description=dust scaffold_341 . biological_region 3275 3279 0.999 + . logic_name=eponine scaffold_341 . repeat_region 5248 5255 . ? . description=dust scaffold_341 . biological_region 5722 5726 0.999 + . logic_name=eponine scaffold_341 . biological_region 5990 5997 0.999 - . logic_name=eponine scaffold_341 . biological_region 6239 6239 0.999 + . logic_name=eponine scaffold_341 . biological_region 6297 6300 0.999 + . logic_name=eponine scaffold_341 . biological_region 6648 6651 0.999 - . logic_name=eponine scaffold_341 . biological_region 6668 6673 0.999 - . logic_name=eponine scaffold_341 ensembl protein_coding_gene 5398 5511 . + . ID=Physo125679;biotype=protein_coding;external_name=estExt_Genewise1.C_3410001;logic_name=jgi_physo1_1 scaffold_341 ensembl transcript 5398 5511 . + . ID=Physo125679;Parent=Physo125679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_341 . CDS 5398 5511 . + 0 ID=Physo125679;Parent=Physo125679;rank=1 scaffold_341 . exon 5398 5511 . + . ID=Physo125679.1;Parent=Physo125679;constitutive=1;rank=1 scaffold_341 ensembl protein_coding_gene 476 1051 . + . ID=Physo144931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3410001;logic_name=jgi_physo1_1 scaffold_341 ensembl transcript 476 1051 . + . ID=Physo144931;Parent=Physo144931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_341 . CDS 476 1051 . + 0 ID=Physo144931;Parent=Physo144931;rank=1 scaffold_341 . exon 476 1051 . + . ID=Physo144931.1;Parent=Physo144931;constitutive=1;rank=1 scaffold_341 ensembl protein_coding_gene 3222 3802 . + . ID=Physo144932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3410002;logic_name=jgi_physo1_1 scaffold_341 ensembl transcript 3222 3802 . + . ID=Physo144932;Parent=Physo144932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_341 . CDS 3222 3713 . + 0 ID=Physo144932;Parent=Physo144932;rank=1 scaffold_341 . exon 3222 3802 . + . ID=Physo144932.1;Parent=Physo144932;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_341 ensembl protein_coding_gene 5602 6843 . - . ID=Physo144933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3410003;logic_name=jgi_physo1_1 scaffold_341 ensembl transcript 5602 6843 . - . ID=Physo144933;Parent=Physo144933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_341 . CDS 5602 6843 . - 0 ID=Physo144933;Parent=Physo144933;rank=1 scaffold_341 . exon 5602 6843 . - . ID=Physo144933.1;Parent=Physo144933;constitutive=1;rank=1 scaffold_341 ensembl protein_coding_gene 13823 13915 . + . ID=Physo125680;biotype=protein_coding;external_name=estExt_Genewise1.C_3410002;logic_name=jgi_physo1_1 scaffold_341 ensembl transcript 13823 13915 . + . ID=Physo125680;Parent=Physo125680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_341 . CDS 13823 13915 . + 0 ID=Physo125680;Parent=Physo125680;rank=1 scaffold_341 . exon 13823 13915 . + . ID=Physo125680.1;Parent=Physo125680;constitutive=1;rank=1 scaffold_341 ensembl protein_coding_gene 9819 13819 . + . ID=Physo144934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3410004;logic_name=jgi_physo1_1 scaffold_341 ensembl transcript 9819 13819 . + . ID=Physo144934;Parent=Physo144934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_341 . CDS 9819 9903 . + 0 ID=Physo144934;Parent=Physo144934;rank=1 scaffold_341 . exon 9819 9903 . + . ID=Physo144934.1;Parent=Physo144934;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_341 . CDS 9975 10259 . + 0 ID=Physo144934;Parent=Physo144934;rank=2 scaffold_341 . exon 9975 10259 . + . ID=Physo144934.2;Parent=Physo144934;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_341 . CDS 10352 10944 . + 0 ID=Physo144934;Parent=Physo144934;rank=3 scaffold_341 . exon 10352 10944 . + . ID=Physo144934.3;Parent=Physo144934;constitutive=1;ensembl_phase=1;rank=3 scaffold_341 . CDS 10996 11433 . + 0 ID=Physo144934;Parent=Physo144934;rank=4 scaffold_341 . exon 10996 11433 . + . ID=Physo144934.4;Parent=Physo144934;constitutive=1;rank=4 scaffold_341 . CDS 11483 11747 . + 0 ID=Physo144934;Parent=Physo144934;rank=5 scaffold_341 . exon 11483 11747 . + . ID=Physo144934.5;Parent=Physo144934;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_341 . CDS 12259 12487 . + 0 ID=Physo144934;Parent=Physo144934;rank=6 scaffold_341 . exon 12259 12487 . + . ID=Physo144934.6;Parent=Physo144934;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_341 . CDS 12561 12786 . + 0 ID=Physo144934;Parent=Physo144934;rank=7 scaffold_341 . exon 12561 12786 . + . ID=Physo144934.7;Parent=Physo144934;constitutive=1;ensembl_phase=2;rank=7 scaffold_341 . CDS 12995 13064 . + 0 ID=Physo144934;Parent=Physo144934;rank=8 scaffold_341 . exon 12995 13064 . + . ID=Physo144934.8;Parent=Physo144934;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_341 . CDS 13254 13819 . + 0 ID=Physo144934;Parent=Physo144934;rank=9 scaffold_341 . exon 13254 13819 . + . ID=Physo144934.9;Parent=Physo144934;constitutive=1;ensembl_phase=1;rank=9 ##gff-version 3 ##sequence-region scaffold_315 1 13932 scaffold_315 . repeat_region 437 444 . ? . description=dust scaffold_315 . repeat_region 1470 1519 . ? . description=dust scaffold_315 . repeat_region 2069 2076 . ? . description=dust scaffold_315 . repeat_region 2965 3014 . ? . description=dust scaffold_315 . repeat_region 3558 3565 . ? . description=dust scaffold_315 . repeat_region 3788 3837 . ? . description=dust scaffold_315 . repeat_region 6179 6228 . ? . description=dust scaffold_315 . repeat_region 8957 9016 . ? . description=trf scaffold_315 . repeat_region 8957 9016 . ? . description=trf scaffold_315 . repeat_region 10740 10816 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_338 1 13962 scaffold_338 . biological_region 258 262 0.999 + . logic_name=eponine scaffold_338 . biological_region 345 346 0.999 + . logic_name=eponine scaffold_338 . biological_region 4636 4641 0.999 - . logic_name=eponine scaffold_338 . repeat_region 12052 12504 . ? . description=dust scaffold_338 . repeat_region 13097 13215 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_336 1 14010 scaffold_336 . repeat_region 1624 6443 . ? . description=dust scaffold_336 . repeat_region 6444 7686 . ? . description=trf scaffold_336 . biological_region 6497 6499 0.999 + . logic_name=eponine scaffold_336 . biological_region 6827 6829 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_335 1 14045 scaffold_335 . repeat_region 745 2136 . ? . description=dust scaffold_335 . biological_region 2393 2394 0.999 - . logic_name=eponine scaffold_335 . repeat_region 2845 2866 . ? . description=dust scaffold_335 . repeat_region 2845 2866 . ? . description=trf scaffold_335 . biological_region 3580 3583 0.999 - . logic_name=eponine scaffold_335 . biological_region 3583 3585 0.999 + . logic_name=eponine scaffold_335 . biological_region 3938 3938 0.999 + . logic_name=eponine scaffold_335 . biological_region 4056 4058 0.999 - . logic_name=eponine scaffold_335 . repeat_region 4148 5331 . ? . description=dust scaffold_335 ensembl protein_coding_gene 620 4104 . - . ID=Physo144923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3350001;logic_name=jgi_physo1_1 scaffold_335 ensembl transcript 620 4104 . - . ID=Physo144923;Parent=Physo144923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_335 . CDS 620 631 . - 0 ID=Physo144923;Parent=Physo144923;rank=2 scaffold_335 . exon 620 631 . - . ID=Physo144923.2;Parent=Physo144923;constitutive=1;rank=2 scaffold_335 . CDS 2149 4104 . - 0 ID=Physo144923;Parent=Physo144923;rank=1 scaffold_335 . exon 2149 4104 . - . ID=Physo144923.1;Parent=Physo144923;constitutive=1;rank=1 scaffold_335 ensembl protein_coding_gene 12066 13845 . - . ID=Physo144924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3350002;logic_name=jgi_physo1_1 scaffold_335 ensembl transcript 12066 13845 . - . ID=Physo144924;Parent=Physo144924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_335 . CDS 12066 12345 . - 0 ID=Physo144924;Parent=Physo144924;rank=3 scaffold_335 . exon 12066 12345 . - . ID=Physo144924.3;Parent=Physo144924;constitutive=1;ensembl_phase=2;rank=3 scaffold_335 . CDS 12420 13704 . - 0 ID=Physo144924;Parent=Physo144924;rank=2 scaffold_335 . exon 12420 13704 . - . ID=Physo144924.2;Parent=Physo144924;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_335 . CDS 13782 13845 . - 0 ID=Physo144924;Parent=Physo144924;rank=1 scaffold_335 . exon 13782 13845 . - . ID=Physo144924.1;Parent=Physo144924;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_334 1 14063 scaffold_334 . repeat_region 2658 2694 . ? . description=trf scaffold_334 . biological_region 2682 2683 0.999 + . logic_name=eponine scaffold_334 . biological_region 2693 2696 0.999 + . logic_name=eponine scaffold_334 . biological_region 2728 2732 0.999 + . logic_name=eponine scaffold_334 . biological_region 2767 2772 0.999 - . logic_name=eponine scaffold_334 . biological_region 3514 3521 0.999 + . logic_name=eponine scaffold_334 . repeat_region 4501 4550 . ? . description=dust scaffold_334 . repeat_region 4502 4548 . ? . description=trf scaffold_334 . repeat_region 4521 4545 . ? . description=trf scaffold_334 . repeat_region 10499 11881 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_333 1 14136 scaffold_333 . repeat_region 1087 6733 . ? . description=dust scaffold_333 . biological_region 10124 10127 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_339 1 14160 scaffold_339 . repeat_region 3091 5126 . ? . description=dust scaffold_339 . biological_region 5927 5929 0.999 + . logic_name=eponine scaffold_339 . biological_region 5963 5970 0.999 - . logic_name=eponine scaffold_339 . biological_region 6596 6598 0.999 - . logic_name=eponine scaffold_339 ensembl protein_coding_gene 5504 6802 . + . ID=Physo144925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3390001;logic_name=jgi_physo1_1 scaffold_339 ensembl transcript 5504 6802 . + . ID=Physo144925;Parent=Physo144925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_339 . CDS 5504 5514 . + 0 ID=Physo144925;Parent=Physo144925;rank=1 scaffold_339 . exon 5504 5514 . + . ID=Physo144925.1;Parent=Physo144925;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_339 . CDS 5859 6158 . + 0 ID=Physo144925;Parent=Physo144925;rank=2 scaffold_339 . exon 5859 6158 . + . ID=Physo144925.2;Parent=Physo144925;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_339 . CDS 6184 6802 . + 0 ID=Physo144925;Parent=Physo144925;rank=3 scaffold_339 . exon 6184 6802 . + . ID=Physo144925.3;Parent=Physo144925;constitutive=1;ensembl_phase=2;rank=3 scaffold_339 . repeat_region 7388 7466 . + . description=Polinton-1_PI scaffold_339 . repeat_region 7580 7874 . + . description=Polinton-1_PI scaffold_339 . repeat_region 8028 8073 . + . description=Polinton-1_PI scaffold_339 . repeat_region 8648 8688 . - . description=Polinton-1_PI scaffold_339 . repeat_region 8711 8777 . - . description=Polinton-1_PI scaffold_339 . repeat_region 8830 9130 . + . description=Polinton-1_PI scaffold_339 . repeat_region 9303 9332 . + . description=Polinton-1_PI scaffold_339 . repeat_region 13478 13515 . ? . description=trf scaffold_339 ensembl protein_coding_gene 11658 11912 . - . ID=Physo125672;biotype=protein_coding;external_name=estExt_Genewise1.C_3390004;logic_name=jgi_physo1_1 scaffold_339 ensembl transcript 11658 11912 . - . ID=Physo125672;Parent=Physo125672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_339 . CDS 11658 11912 . - 0 ID=Physo125672;Parent=Physo125672;rank=1 scaffold_339 . exon 11658 11912 . - . ID=Physo125672.1;Parent=Physo125672;constitutive=1;rank=1 scaffold_339 ensembl protein_coding_gene 7707 11214 . + . ID=Physo144926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3390002;logic_name=jgi_physo1_1 scaffold_339 ensembl transcript 7707 11214 . + . ID=Physo144926;Parent=Physo144926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_339 . CDS 7707 8228 . + 0 ID=Physo144926;Parent=Physo144926;rank=1 scaffold_339 . exon 7707 8228 . + . ID=Physo144926.1;Parent=Physo144926;constitutive=1;rank=1 scaffold_339 . CDS 8942 9178 . + 0 ID=Physo144926;Parent=Physo144926;rank=2 scaffold_339 . exon 8942 9178 . + . ID=Physo144926.2;Parent=Physo144926;constitutive=1;rank=2 scaffold_339 . CDS 9212 9265 . + 0 ID=Physo144926;Parent=Physo144926;rank=3 scaffold_339 . exon 9212 9265 . + . ID=Physo144926.3;Parent=Physo144926;constitutive=1;rank=3 scaffold_339 . CDS 10070 10318 . + 0 ID=Physo144926;Parent=Physo144926;rank=4 scaffold_339 . exon 10070 10318 . + . ID=Physo144926.4;Parent=Physo144926;constitutive=1;rank=4 scaffold_339 . CDS 10414 10917 . + 0 ID=Physo144926;Parent=Physo144926;rank=5 scaffold_339 . exon 10414 10917 . + . ID=Physo144926.5;Parent=Physo144926;constitutive=1;rank=5 scaffold_339 . CDS 10972 11214 . + 0 ID=Physo144926;Parent=Physo144926;rank=6 scaffold_339 . exon 10972 11214 . + . ID=Physo144926.6;Parent=Physo144926;constitutive=1;rank=6 ##gff-version 3 ##sequence-region scaffold_337 1 14227 scaffold_337 . biological_region 349 349 0.999 - . logic_name=eponine scaffold_337 . repeat_region 384 391 . ? . description=dust scaffold_337 . repeat_region 414 423 . ? . description=dust scaffold_337 . biological_region 546 546 0.999 + . logic_name=eponine scaffold_337 . repeat_region 800 2689 . ? . description=dust scaffold_337 . biological_region 2859 2860 0.999 + . logic_name=eponine scaffold_337 . biological_region 3006 3010 0.999 + . logic_name=eponine scaffold_337 . biological_region 3039 3043 0.999 + . logic_name=eponine scaffold_337 . biological_region 3087 3090 0.999 + . logic_name=eponine scaffold_337 . biological_region 3129 3137 0.999 - . logic_name=eponine scaffold_337 . biological_region 3157 3158 0.999 + . logic_name=eponine scaffold_337 . biological_region 3172 3175 0.999 + . logic_name=eponine scaffold_337 . biological_region 3180 3182 0.999 - . logic_name=eponine scaffold_337 . biological_region 3184 3188 0.999 + . logic_name=eponine scaffold_337 . biological_region 3709 3717 0.999 - . logic_name=eponine scaffold_337 . repeat_region 3927 8415 . ? . description=dust scaffold_337 . repeat_region 9683 9738 . ? . description=trf scaffold_337 . repeat_region 9770 9846 . ? . description=trf scaffold_337 . repeat_region 10933 11061 . ? . description=trf scaffold_337 . repeat_region 10944 11075 . ? . description=trf scaffold_337 . repeat_region 12163 12224 . ? . description=trf scaffold_337 . repeat_region 14062 14124 . ? . description=trf scaffold_337 . repeat_region 14110 14167 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_331 1 14274 scaffold_331 . repeat_region 1038 1053 . ? . description=dust scaffold_331 . repeat_region 1056 5939 . ? . description=dust scaffold_331 . biological_region 10685 10694 0.999 + . logic_name=eponine scaffold_331 . repeat_region 10704 10798 . ? . description=trf scaffold_331 . biological_region 10744 10745 0.999 + . logic_name=eponine scaffold_331 . biological_region 11403 11404 0.999 + . logic_name=eponine scaffold_331 . biological_region 11529 11530 0.999 + . logic_name=eponine scaffold_331 . repeat_region 12512 12536 . ? . description=trf scaffold_331 . repeat_region 12512 12543 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_329 1 14317 scaffold_329 . repeat_region 390 441 . ? . description=trf scaffold_329 . biological_region 527 533 0.999 + . logic_name=eponine scaffold_329 . biological_region 548 549 0.999 - . logic_name=eponine scaffold_329 . biological_region 632 634 0.999 + . logic_name=eponine scaffold_329 . biological_region 637 641 0.999 - . logic_name=eponine scaffold_329 . biological_region 809 809 0.999 - . logic_name=eponine scaffold_329 . biological_region 1334 1340 0.999 + . logic_name=eponine scaffold_329 . biological_region 1404 1407 0.999 + . logic_name=eponine scaffold_329 . biological_region 1461 1467 0.999 + . logic_name=eponine scaffold_329 . biological_region 1629 1633 0.999 + . logic_name=eponine scaffold_329 . biological_region 1659 1662 0.999 + . logic_name=eponine scaffold_329 . repeat_region 1950 2388 . ? . description=dust scaffold_329 . biological_region 2937 2939 0.999 + . logic_name=eponine scaffold_329 . biological_region 3015 3017 0.999 + . logic_name=eponine scaffold_329 . biological_region 5345 5348 0.999 - . logic_name=eponine scaffold_329 . biological_region 5374 5381 0.999 + . logic_name=eponine scaffold_329 . biological_region 5397 5403 0.999 - . logic_name=eponine scaffold_329 . biological_region 5437 5444 0.999 - . logic_name=eponine scaffold_329 . biological_region 5494 5498 0.999 + . logic_name=eponine scaffold_329 . biological_region 5670 5671 0.999 + . logic_name=eponine scaffold_329 . biological_region 5696 5698 0.999 - . logic_name=eponine scaffold_329 . biological_region 6000 6003 0.999 + . logic_name=eponine scaffold_329 . biological_region 6556 6559 0.999 + . logic_name=eponine scaffold_329 . biological_region 6618 6620 0.999 + . logic_name=eponine scaffold_329 . biological_region 6646 6651 0.999 - . logic_name=eponine scaffold_329 ensembl protein_coding_gene 5616 6752 . + . ID=Physo125661;biotype=protein_coding;external_name=estExt_Genewise1.C_3290002;logic_name=jgi_physo1_1 scaffold_329 ensembl transcript 5616 6752 . + . ID=Physo125661;Parent=Physo125661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_329 . exon 5616 6752 . + . ID=Physo125661.1;Parent=Physo125661;constitutive=1;ensembl_phase=-1;rank=1 scaffold_329 . CDS 5706 6752 . + 0 ID=Physo125661;Parent=Physo125661;rank=1 scaffold_329 ensembl protein_coding_gene 2626 3571 . + . ID=Physo144920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3290001;logic_name=jgi_physo1_1 scaffold_329 ensembl transcript 2626 3571 . + . ID=Physo144920;Parent=Physo144920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_329 . CDS 2626 2637 . + 0 ID=Physo144920;Parent=Physo144920;rank=1 scaffold_329 . exon 2626 2637 . + . ID=Physo144920.1;Parent=Physo144920;constitutive=1;rank=1 scaffold_329 . CDS 2807 3571 . + 0 ID=Physo144920;Parent=Physo144920;rank=2 scaffold_329 . exon 2807 3571 . + . ID=Physo144920.2;Parent=Physo144920;constitutive=1;rank=2 scaffold_329 ensembl protein_coding_gene 5199 8890 . + . ID=Physo144921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3290002;logic_name=jgi_physo1_1 scaffold_329 ensembl transcript 5199 8890 . + . ID=Physo144921;Parent=Physo144921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_329 . CDS 5199 6661 . + 0 ID=Physo144921;Parent=Physo144921;rank=1 scaffold_329 . exon 5199 6661 . + . ID=Physo144921.1;Parent=Physo144921;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_329 . CDS 6699 6781 . + 0 ID=Physo144921;Parent=Physo144921;rank=2 scaffold_329 . exon 6699 6781 . + . ID=Physo144921.2;Parent=Physo144921;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_329 . CDS 6978 8890 . + 0 ID=Physo144921;Parent=Physo144921;rank=3 scaffold_329 . exon 6978 8890 . + . ID=Physo144921.3;Parent=Physo144921;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_330 1 14329 scaffold_330 . repeat_region 864 5749 . ? . description=dust scaffold_330 ensembl protein_coding_gene 5831 6214 . - . ID=Physo125665;biotype=protein_coding;external_name=estExt_Genewise1.C_3300001;logic_name=jgi_physo1_1 scaffold_330 ensembl transcript 5831 6214 . - . ID=Physo125665;Parent=Physo125665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_330 . CDS 5831 6046 . - 0 ID=Physo125665;Parent=Physo125665;rank=1 scaffold_330 . exon 5831 6214 . - . ID=Physo125665.1;Parent=Physo125665;constitutive=1;ensembl_phase=-1;rank=1 scaffold_330 . repeat_region 12997 13023 . ? . description=trf scaffold_330 . biological_region 13963 13966 0.999 - . logic_name=eponine scaffold_330 . biological_region 14260 14262 0.999 + . logic_name=eponine scaffold_330 ensembl protein_coding_gene 13911 14255 . - . ID=Physo144922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3300001;logic_name=jgi_physo1_1 scaffold_330 ensembl transcript 13911 14255 . - . ID=Physo144922;Parent=Physo144922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_330 . CDS 13911 14108 . - 0 ID=Physo144922;Parent=Physo144922;rank=1 scaffold_330 . exon 13911 14255 . - . ID=Physo144922.1;Parent=Physo144922;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_328 1 14349 scaffold_328 . biological_region 2267 2269 0.999 - . logic_name=eponine scaffold_328 ensembl protein_coding_gene 1423 2047 . + . ID=Physo144919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3280001;logic_name=jgi_physo1_1 scaffold_328 ensembl transcript 1423 2047 . + . ID=Physo144919;Parent=Physo144919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_328 . CDS 1423 1806 . + 0 ID=Physo144919;Parent=Physo144919;rank=1 scaffold_328 . exon 1423 1806 . + . ID=Physo144919.1;Parent=Physo144919;constitutive=1;rank=1 scaffold_328 . CDS 2015 2047 . + 0 ID=Physo144919;Parent=Physo144919;rank=2 scaffold_328 . exon 2015 2047 . + . ID=Physo144919.2;Parent=Physo144919;constitutive=1;rank=2 scaffold_328 . repeat_region 11568 11649 . ? . description=trf scaffold_328 . repeat_region 11568 11649 . ? . description=trf scaffold_328 . repeat_region 11599 11658 . ? . description=trf scaffold_328 . repeat_region 11790 11855 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_325 1 14389 scaffold_325 . biological_region 261 262 0.999 - . logic_name=eponine scaffold_325 . biological_region 318 321 0.999 + . logic_name=eponine scaffold_325 . biological_region 327 330 0.999 - . logic_name=eponine scaffold_325 . biological_region 382 387 0.999 + . logic_name=eponine scaffold_325 . biological_region 421 422 0.999 - . logic_name=eponine scaffold_325 . biological_region 435 440 0.999 - . logic_name=eponine scaffold_325 . biological_region 501 503 0.999 - . logic_name=eponine scaffold_325 . biological_region 856 863 0.999 - . logic_name=eponine scaffold_325 . biological_region 877 880 0.999 - . logic_name=eponine scaffold_325 . repeat_region 979 1011 . ? . description=trf scaffold_325 . repeat_region 2145 3826 . ? . description=dust scaffold_325 . biological_region 4148 4154 0.999 + . logic_name=eponine scaffold_325 . biological_region 4215 4222 0.999 - . logic_name=eponine scaffold_325 . biological_region 4235 4239 0.999 - . logic_name=eponine scaffold_325 . biological_region 4249 4252 0.999 - . logic_name=eponine scaffold_325 . repeat_region 5101 5152 . ? . description=trf scaffold_325 . repeat_region 5572 6064 . ? . description=dust scaffold_325 . biological_region 6930 6933 0.999 - . logic_name=eponine scaffold_325 . biological_region 7045 7051 0.999 - . logic_name=eponine scaffold_325 . repeat_region 7112 7140 . ? . description=dust scaffold_325 . repeat_region 7112 7140 . ? . description=trf scaffold_325 . repeat_region 7112 7140 . ? . description=trf scaffold_325 . biological_region 7143 7145 0.999 - . logic_name=eponine scaffold_325 ensembl protein_coding_gene 82 4942 . + . ID=Physo144916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3250001;logic_name=jgi_physo1_1 scaffold_325 ensembl transcript 82 4942 . + . ID=Physo144916;Parent=Physo144916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_325 . exon 82 268 . + . ID=Physo144916.1;Parent=Physo144916;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_325 . CDS 90 268 . + 0 ID=Physo144916;Parent=Physo144916;rank=1 scaffold_325 . CDS 297 968 . + 0 ID=Physo144916;Parent=Physo144916;rank=2 scaffold_325 . exon 297 968 . + . ID=Physo144916.2;Parent=Physo144916;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_325 . CDS 1190 1259 . + 0 ID=Physo144916;Parent=Physo144916;rank=3 scaffold_325 . exon 1190 1259 . + . ID=Physo144916.3;Parent=Physo144916;constitutive=1;ensembl_phase=2;rank=3 scaffold_325 . CDS 1359 1408 . + 0 ID=Physo144916;Parent=Physo144916;rank=4 scaffold_325 . exon 1359 1408 . + . ID=Physo144916.4;Parent=Physo144916;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_325 . CDS 3922 3989 . + 0 ID=Physo144916;Parent=Physo144916;rank=5 scaffold_325 . exon 3922 3989 . + . ID=Physo144916.5;Parent=Physo144916;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_325 . CDS 4094 4320 . + 0 ID=Physo144916;Parent=Physo144916;rank=6 scaffold_325 . exon 4094 4320 . + . ID=Physo144916.6;Parent=Physo144916;constitutive=1;ensembl_phase=1;rank=6 scaffold_325 . CDS 4404 4550 . + 0 ID=Physo144916;Parent=Physo144916;rank=7 scaffold_325 . exon 4404 4550 . + . ID=Physo144916.7;Parent=Physo144916;constitutive=1;rank=7 scaffold_325 . CDS 4651 4804 . + 0 ID=Physo144916;Parent=Physo144916;rank=8 scaffold_325 . exon 4651 4804 . + . ID=Physo144916.8;Parent=Physo144916;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_325 . CDS 4881 4942 . + 0 ID=Physo144916;Parent=Physo144916;rank=9 scaffold_325 . exon 4881 4942 . + . ID=Physo144916.9;Parent=Physo144916;constitutive=1;ensembl_phase=1;rank=9 scaffold_325 ensembl protein_coding_gene 6083 14389 . - . ID=Physo144917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3250002;logic_name=jgi_physo1_1 scaffold_325 ensembl transcript 6083 14389 . - . ID=Physo144917;Parent=Physo144917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_325 . CDS 6083 6092 . - 0 ID=Physo144917;Parent=Physo144917;rank=2 scaffold_325 . exon 6083 6092 . - . ID=Physo144917.6;Parent=Physo144917;constitutive=1;ensembl_phase=2;rank=6 scaffold_325 . CDS 6116 8250 . - 0 ID=Physo144917;Parent=Physo144917;rank=1 scaffold_325 . exon 6116 8863 . - . ID=Physo144917.5;Parent=Physo144917;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=5 scaffold_325 . exon 12788 13065 . - . ID=Physo144917.4;Parent=Physo144917;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_325 . exon 13137 13670 . - . ID=Physo144917.3;Parent=Physo144917;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_325 . exon 13693 13983 . - . ID=Physo144917.2;Parent=Physo144917;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_325 . exon 14006 14389 . - . ID=Physo144917.1;Parent=Physo144917;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_317 1 14411 scaffold_317 . repeat_region 3139 3188 . ? . description=dust scaffold_317 . biological_region 3827 3828 0.999 - . logic_name=eponine scaffold_317 . repeat_region 4754 4803 . ? . description=dust scaffold_317 . repeat_region 5726 5775 . ? . description=dust scaffold_317 . repeat_region 6658 6707 . ? . description=dust scaffold_317 ensembl protein_coding_gene 2713 3925 . - . ID=Physo144897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3170001;logic_name=jgi_physo1_1 scaffold_317 ensembl transcript 2713 3925 . - . ID=Physo144897;Parent=Physo144897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_317 . CDS 2713 2756 . - 0 ID=Physo144897;Parent=Physo144897;rank=2 scaffold_317 . exon 2713 2756 . - . ID=Physo144897.2;Parent=Physo144897;constitutive=1;ensembl_phase=1;rank=2 scaffold_317 . CDS 3325 3925 . - 0 ID=Physo144897;Parent=Physo144897;rank=1 scaffold_317 . exon 3325 3925 . - . ID=Physo144897.1;Parent=Physo144897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_317 ensembl protein_coding_gene 4290 5047 . + . ID=Physo144898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3170002;logic_name=jgi_physo1_1 scaffold_317 ensembl transcript 4290 5047 . + . ID=Physo144898;Parent=Physo144898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_317 . exon 4290 4376 . + . ID=Physo144898.1;Parent=Physo144898;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_317 . CDS 4339 4376 . + 0 ID=Physo144898;Parent=Physo144898;rank=1 scaffold_317 . CDS 4457 4708 . + 0 ID=Physo144898;Parent=Physo144898;rank=2 scaffold_317 . exon 4457 4708 . + . ID=Physo144898.2;Parent=Physo144898;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_317 . CDS 5029 5047 . + 0 ID=Physo144898;Parent=Physo144898;rank=3 scaffold_317 . exon 5029 5047 . + . ID=Physo144898.3;Parent=Physo144898;constitutive=1;ensembl_phase=2;rank=3 scaffold_317 ensembl protein_coding_gene 6118 6621 . - . ID=Physo144899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3170003;logic_name=jgi_physo1_1 scaffold_317 ensembl transcript 6118 6621 . - . ID=Physo144899;Parent=Physo144899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_317 . CDS 6118 6621 . - 0 ID=Physo144899;Parent=Physo144899;rank=1 scaffold_317 . exon 6118 6621 . - . ID=Physo144899.1;Parent=Physo144899;constitutive=1;rank=1 scaffold_317 ensembl protein_coding_gene 7144 7920 . + . ID=Physo144900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3170004;logic_name=jgi_physo1_1 scaffold_317 ensembl transcript 7144 7920 . + . ID=Physo144900;Parent=Physo144900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_317 . CDS 7144 7836 . + 0 ID=Physo144900;Parent=Physo144900;rank=1 scaffold_317 . exon 7144 7920 . + . ID=Physo144900.1;Parent=Physo144900;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_317 ensembl protein_coding_gene 9084 9812 . + . ID=Physo109688;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_3170001;logic_name=jgi_physo1_1 scaffold_317 ensembl transcript 9084 9812 . + . ID=Physo109688;Parent=Physo109688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_317 . CDS 9084 9695 . + 0 ID=Physo109688;Parent=Physo109688;rank=1 scaffold_317 . exon 9084 9812 . + . ID=Physo109688.1;Parent=Physo109688;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_317 ensembl protein_coding_gene 9827 11994 . - . ID=Physo109689;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_3170002;logic_name=jgi_physo1_1 scaffold_317 ensembl transcript 9827 11994 . - . ID=Physo109689;Parent=Physo109689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_317 . exon 9827 11994 . - . ID=Physo109689.1;Parent=Physo109689;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_317 . CDS 9931 11994 . - 0 ID=Physo109689;Parent=Physo109689;rank=1 scaffold_317 ensembl protein_coding_gene 8057 8780 . + . ID=Physo144901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3170005;logic_name=jgi_physo1_1 scaffold_317 ensembl transcript 8057 8780 . + . ID=Physo144901;Parent=Physo144901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_317 . exon 8057 8651 . + . ID=Physo144901.1;Parent=Physo144901;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_317 . CDS 8086 8651 . + 0 ID=Physo144901;Parent=Physo144901;rank=1 scaffold_317 . CDS 8702 8726 . + 0 ID=Physo144901;Parent=Physo144901;rank=2 scaffold_317 . exon 8702 8780 . + . ID=Physo144901.2;Parent=Physo144901;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_317 ensembl protein_coding_gene 13586 14366 . + . ID=Physo144904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3170008;logic_name=jgi_physo1_1 scaffold_317 ensembl transcript 13586 14366 . + . ID=Physo144904;Parent=Physo144904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_317 . CDS 13586 14365 . + 0 ID=Physo144904;Parent=Physo144904;rank=1 scaffold_317 . exon 13586 14366 . + . ID=Physo144904.1;Parent=Physo144904;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_327 1 14411 scaffold_327 . repeat_region 1 1107 . ? . description=trf scaffold_327 . repeat_region 1108 5239 . ? . description=dust scaffold_327 . repeat_region 5438 5461 . ? . description=trf scaffold_327 ensembl protein_coding_gene 10 830 . - . ID=Physo144918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3270001;logic_name=jgi_physo1_1 scaffold_327 ensembl transcript 10 830 . - . ID=Physo144918;Parent=Physo144918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_327 . CDS 10 337 . - 0 ID=Physo144918;Parent=Physo144918;rank=3 scaffold_327 . exon 10 337 . - . ID=Physo144918.3;Parent=Physo144918;constitutive=1;ensembl_phase=2;rank=3 scaffold_327 . CDS 509 515 . - 0 ID=Physo144918;Parent=Physo144918;rank=2 scaffold_327 . exon 509 515 . - . ID=Physo144918.2;Parent=Physo144918;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_327 . CDS 707 830 . - 0 ID=Physo144918;Parent=Physo144918;rank=1 scaffold_327 . exon 707 830 . - . ID=Physo144918.1;Parent=Physo144918;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_323 1 14452 scaffold_323 . repeat_region 1131 1169 . ? . description=trf scaffold_323 . biological_region 1299 1300 0.999 + . logic_name=eponine scaffold_323 . biological_region 1396 1399 0.999 + . logic_name=eponine scaffold_323 . repeat_region 2788 2798 . ? . description=dust scaffold_323 . repeat_region 3122 3187 . ? . description=trf scaffold_323 . repeat_region 3153 3199 . ? . description=trf scaffold_323 . repeat_region 3766 7159 . ? . description=dust scaffold_323 ensembl protein_coding_gene 1080 1938 . + . ID=Physo144914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3230001;logic_name=jgi_physo1_1 scaffold_323 ensembl transcript 1080 1938 . + . ID=Physo144914;Parent=Physo144914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_323 . CDS 1080 1524 . + 0 ID=Physo144914;Parent=Physo144914;rank=1 scaffold_323 . exon 1080 1524 . + . ID=Physo144914.1;Parent=Physo144914;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_323 . CDS 1895 1938 . + 0 ID=Physo144914;Parent=Physo144914;rank=2 scaffold_323 . exon 1895 1938 . + . ID=Physo144914.2;Parent=Physo144914;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_332 1 14481 scaffold_332 . repeat_region 2540 2751 . ? . description=trf scaffold_332 . repeat_region 3400 3534 . ? . description=dust scaffold_332 . repeat_region 4969 4976 . ? . description=dust scaffold_332 . biological_region 5961 5964 0.999 + . logic_name=eponine scaffold_332 ensembl tRNA_gene 13364 13435 . + . ID=EPrPSOG00000000154;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_332 ensembl transcript 13364 13435 . + . ID=EPrPSOT00000000154;Parent=EPrPSOG00000000154;biotype=tRNA;logic_name=ncrna_eg scaffold_332 ensembl tRNA_gene 8323 8394 . - . ID=EPrPSOG00000000172;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_332 ensembl transcript 8323 8394 . - . ID=EPrPSOT00000000172;Parent=EPrPSOG00000000172;biotype=tRNA;logic_name=ncrna_eg scaffold_332 . exon 13364 13435 . + . ID=EPrPSOE00000000154;Parent=EPrPSOT00000000154;constitutive=1;rank=1 scaffold_332 . exon 8323 8394 . - . ID=EPrPSOE00000000172;Parent=EPrPSOT00000000172;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_326 1 14511 scaffold_326 . biological_region 5299 5301 0.999 - . logic_name=eponine scaffold_326 . repeat_region 9859 9901 . ? . description=trf scaffold_326 . repeat_region 13208 13257 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_324 1 14620 scaffold_324 . repeat_region 1170 1261 . ? . description=trf scaffold_324 . repeat_region 1183 1239 . ? . description=trf scaffold_324 . biological_region 2658 2659 0.999 - . logic_name=eponine scaffold_324 . biological_region 4158 4161 0.999 + . logic_name=eponine scaffold_324 . repeat_region 4276 4311 . ? . description=trf scaffold_324 . biological_region 4295 4299 0.999 - . logic_name=eponine scaffold_324 . repeat_region 4558 4607 . ? . description=dust scaffold_324 . biological_region 4774 4782 0.999 - . logic_name=eponine scaffold_324 . biological_region 4850 4854 0.999 - . logic_name=eponine scaffold_324 . biological_region 4882 4885 0.999 - . logic_name=eponine scaffold_324 . repeat_region 6517 6543 . ? . description=trf scaffold_324 . biological_region 6534 6535 0.999 + . logic_name=eponine scaffold_324 . biological_region 6549 6552 0.999 - . logic_name=eponine scaffold_324 . biological_region 6604 6609 0.999 - . logic_name=eponine scaffold_324 ensembl protein_coding_gene 35 1086 . + . ID=Physo125653;biotype=protein_coding;external_name=estExt_Genewise1.C_3240002;logic_name=jgi_physo1_1 scaffold_324 ensembl transcript 35 1086 . + . ID=Physo125653;Parent=Physo125653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_324 . exon 35 412 . + . ID=Physo125653.1;Parent=Physo125653;constitutive=1;ensembl_phase=-1;rank=1 scaffold_324 . CDS 83 412 . + 0 ID=Physo125653;Parent=Physo125653;rank=1 scaffold_324 . CDS 424 510 . + 0 ID=Physo125653;Parent=Physo125653;rank=2 scaffold_324 . exon 424 510 . + . ID=Physo125653.2;Parent=Physo125653;constitutive=1;rank=2 scaffold_324 . CDS 844 1086 . + 0 ID=Physo125653;Parent=Physo125653;rank=3 scaffold_324 . exon 844 1086 . + . ID=Physo125653.3;Parent=Physo125653;constitutive=1;rank=3 scaffold_324 ensembl protein_coding_gene 2857 8081 . + . ID=Physo144915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3240001;logic_name=jgi_physo1_1 scaffold_324 ensembl transcript 2857 8081 . + . ID=Physo144915;Parent=Physo144915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_324 . CDS 2857 4080 . + 0 ID=Physo144915;Parent=Physo144915;rank=1 scaffold_324 . exon 2857 4080 . + . ID=Physo144915.1;Parent=Physo144915;constitutive=1;rank=1 scaffold_324 . CDS 4170 4543 . + 0 ID=Physo144915;Parent=Physo144915;rank=2 scaffold_324 . exon 4170 4543 . + . ID=Physo144915.2;Parent=Physo144915;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_324 . CDS 4864 5209 . + 0 ID=Physo144915;Parent=Physo144915;rank=3 scaffold_324 . exon 4864 5209 . + . ID=Physo144915.3;Parent=Physo144915;constitutive=1;ensembl_phase=2;rank=3 scaffold_324 . CDS 5279 7148 . + 0 ID=Physo144915;Parent=Physo144915;rank=4 scaffold_324 . exon 5279 7148 . + . ID=Physo144915.4;Parent=Physo144915;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_324 . CDS 7190 7217 . + 0 ID=Physo144915;Parent=Physo144915;rank=5 scaffold_324 . exon 7190 7217 . + . ID=Physo144915.5;Parent=Physo144915;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_324 . CDS 7315 7415 . + 0 ID=Physo144915;Parent=Physo144915;rank=6 scaffold_324 . CDS 7475 7907 . + 0 ID=Physo144915;Parent=Physo144915;rank=7 scaffold_324 . CDS 7997 8081 . + 0 ID=Physo144915;Parent=Physo144915;rank=8 scaffold_324 . exon 7315 7415 . + . ID=Physo144915.6;Parent=Physo144915;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_324 . exon 7475 7907 . + . ID=Physo144915.7;Parent=Physo144915;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_324 . exon 7997 8081 . + . ID=Physo144915.8;Parent=Physo144915;constitutive=1;ensembl_phase=2;rank=8 ##gff-version 3 ##sequence-region scaffold_321 1 14779 scaffold_321 . repeat_region 596 606 . ? . description=dust scaffold_321 . biological_region 722 722 0.999 + . logic_name=eponine scaffold_321 . biological_region 842 844 0.999 - . logic_name=eponine scaffold_321 . biological_region 1131 1138 0.999 - . logic_name=eponine scaffold_321 . biological_region 1189 1191 0.999 + . logic_name=eponine scaffold_321 . repeat_region 1898 6834 . ? . description=dust scaffold_321 . biological_region 7308 7310 0.999 + . logic_name=eponine scaffold_321 . repeat_region 7390 7409 . ? . description=trf scaffold_321 ensembl protein_coding_gene 6988 7958 . - . ID=Physo144910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3210001;logic_name=jgi_physo1_1 scaffold_321 ensembl transcript 6988 7958 . - . ID=Physo144910;Parent=Physo144910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_321 . CDS 6988 7001 . - 0 ID=Physo144910;Parent=Physo144910;rank=3 scaffold_321 . exon 6988 7001 . - . ID=Physo144910.3;Parent=Physo144910;constitutive=1;ensembl_phase=1;rank=3 scaffold_321 . CDS 7022 7695 . - 0 ID=Physo144910;Parent=Physo144910;rank=2 scaffold_321 . exon 7022 7695 . - . ID=Physo144910.2;Parent=Physo144910;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_321 . CDS 7810 7958 . - 0 ID=Physo144910;Parent=Physo144910;rank=1 scaffold_321 ensembl protein_coding_gene 10264 10605 . - . ID=Physo125646;biotype=protein_coding;external_name=estExt_Genewise1.C_3210002;logic_name=jgi_physo1_1 scaffold_321 ensembl transcript 10264 10605 . - . ID=Physo125646;Parent=Physo125646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_321 . CDS 10264 10605 . - 0 ID=Physo125646;Parent=Physo125646;rank=1 scaffold_321 . exon 10264 10605 . - . ID=Physo125646.1;Parent=Physo125646;constitutive=1;rank=1 scaffold_321 . exon 7810 7958 . - . ID=Physo144910.1;Parent=Physo144910;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_313 1 14792 scaffold_313 . repeat_region 10 224 . - . description=Polinton-1_PI scaffold_313 . repeat_region 1492 2294 . ? . description=dust scaffold_313 . repeat_region 2379 2983 . - . description=Gypsy-2-I_PI-int scaffold_313 . repeat_region 3358 4562 . - . description=Gypsy-2-I_PI-int scaffold_313 ensembl protein_coding_gene 2450 2839 . - . ID=Physo125630;biotype=protein_coding;external_name=estExt_Genewise1.C_3130001;logic_name=jgi_physo1_1 scaffold_313 ensembl transcript 2450 2839 . - . ID=Physo125630;Parent=Physo125630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_313 . CDS 2450 2833 . - 0 ID=Physo125630;Parent=Physo125630;rank=1 scaffold_313 . exon 2450 2839 . - . ID=Physo125630.1;Parent=Physo125630;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_320 1 14843 scaffold_320 . repeat_region 945 6547 . ? . description=dust scaffold_320 . repeat_region 6548 7116 . - . description=GypsyPi-1c_I-int scaffold_320 ensembl protein_coding_gene 6653 7792 . - . ID=Physo144909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3200001;logic_name=jgi_physo1_1 scaffold_320 ensembl transcript 6653 7792 . - . ID=Physo144909;Parent=Physo144909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_320 . CDS 6653 6655 . - 0 ID=Physo144909;Parent=Physo144909;rank=3 scaffold_320 . exon 6653 6655 . - . ID=Physo144909.3;Parent=Physo144909;constitutive=1;rank=3 scaffold_320 . CDS 6693 7235 . - 0 ID=Physo144909;Parent=Physo144909;rank=2 scaffold_320 . exon 6693 7235 . - . ID=Physo144909.2;Parent=Physo144909;constitutive=1;rank=2 scaffold_320 . CDS 7586 7792 . - 0 ID=Physo144909;Parent=Physo144909;rank=1 scaffold_320 . biological_region 7612 7614 0.999 - . logic_name=eponine scaffold_320 . biological_region 7650 7651 0.999 + . logic_name=eponine scaffold_320 . biological_region 7668 7669 0.999 + . logic_name=eponine scaffold_320 . biological_region 7688 7691 0.999 + . logic_name=eponine scaffold_320 . biological_region 7859 7861 0.999 + . logic_name=eponine scaffold_320 . biological_region 7879 7883 0.999 - . logic_name=eponine scaffold_320 . biological_region 8258 8259 0.999 - . logic_name=eponine scaffold_320 . repeat_region 13587 13659 . ? . description=trf scaffold_320 . repeat_region 13751 13841 . ? . description=trf scaffold_320 . repeat_region 13753 13860 . ? . description=trf scaffold_320 . exon 7586 7792 . - . ID=Physo144909.1;Parent=Physo144909;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_318 1 14998 scaffold_318 . repeat_region 4161 4285 . ? . description=trf scaffold_318 . repeat_region 4502 4509 . ? . description=dust scaffold_318 . biological_region 4532 4533 0.999 + . logic_name=eponine scaffold_318 . biological_region 4960 4962 0.999 - . logic_name=eponine scaffold_318 . biological_region 5122 5129 0.999 - . logic_name=eponine scaffold_318 . biological_region 5125 5130 0.999 + . logic_name=eponine scaffold_318 . biological_region 5150 5150 0.999 + . logic_name=eponine scaffold_318 . biological_region 5155 5164 0.999 - . logic_name=eponine scaffold_318 . biological_region 5211 5211 0.999 - . logic_name=eponine scaffold_318 . biological_region 5230 5235 0.999 - . logic_name=eponine scaffold_318 . biological_region 6882 6887 0.999 + . logic_name=eponine scaffold_318 ensembl protein_coding_gene 4588 7688 . + . ID=Physo144905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3180001;logic_name=jgi_physo1_1 scaffold_318 ensembl transcript 4588 7688 . + . ID=Physo144905;Parent=Physo144905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_318 . CDS 4588 5816 . + 0 ID=Physo144905;Parent=Physo144905;rank=1 scaffold_318 . exon 4588 5816 . + . ID=Physo144905.1;Parent=Physo144905;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_318 . CDS 6521 7174 . + 0 ID=Physo144905;Parent=Physo144905;rank=2 scaffold_318 . exon 6521 7174 . + . ID=Physo144905.2;Parent=Physo144905;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_318 . CDS 7376 7688 . + 0 ID=Physo144905;Parent=Physo144905;rank=3 scaffold_318 . exon 7376 7688 . + . ID=Physo144905.3;Parent=Physo144905;constitutive=1;ensembl_phase=2;rank=3 scaffold_318 ensembl protein_coding_gene 7938 9242 . - . ID=Physo144906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3180002;logic_name=jgi_physo1_1 scaffold_318 ensembl transcript 7938 9242 . - . ID=Physo144906;Parent=Physo144906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_318 . CDS 7938 8336 . - 0 ID=Physo144906;Parent=Physo144906;rank=3 scaffold_318 . exon 7938 8336 . - . ID=Physo144906.3;Parent=Physo144906;constitutive=1;rank=3 scaffold_318 . CDS 8578 8746 . - 0 ID=Physo144906;Parent=Physo144906;rank=2 scaffold_318 . exon 8578 8746 . - . ID=Physo144906.2;Parent=Physo144906;constitutive=1;ensembl_phase=2;rank=2 scaffold_318 . CDS 8998 9242 . - 0 ID=Physo144906;Parent=Physo144906;rank=1 scaffold_318 . exon 8998 9242 . - . ID=Physo144906.1;Parent=Physo144906;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_316 1 15026 scaffold_316 . repeat_region 400 407 . ? . description=dust scaffold_316 . repeat_region 1993 2025 . ? . description=dust scaffold_316 . repeat_region 1993 2025 . ? . description=trf scaffold_316 . biological_region 2270 2271 0.999 - . logic_name=eponine scaffold_316 . repeat_region 3377 6672 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_314 1 15037 scaffold_314 . biological_region 1211 1216 0.999 - . logic_name=eponine scaffold_314 . repeat_region 1361 6414 . ? . description=dust scaffold_314 . repeat_region 7608 7796 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_322 1 15147 scaffold_322 . repeat_region 1251 1300 . ? . description=dust scaffold_322 . repeat_region 1349 1379 . ? . description=trf scaffold_322 . repeat_region 1384 1421 . ? . description=trf scaffold_322 . repeat_region 3360 3490 . ? . description=trf scaffold_322 . biological_region 4853 4858 0.999 - . logic_name=eponine scaffold_322 . biological_region 4879 4880 0.999 + . logic_name=eponine scaffold_322 . biological_region 4909 4912 0.999 + . logic_name=eponine scaffold_322 . repeat_region 5441 5490 . ? . description=dust scaffold_322 . biological_region 6851 6856 0.999 - . logic_name=eponine scaffold_322 . biological_region 6877 6878 0.999 + . logic_name=eponine scaffold_322 . biological_region 6907 6910 0.999 + . logic_name=eponine scaffold_322 . repeat_region 7007 7327 . ? . description=dust scaffold_322 ensembl protein_coding_gene 5657 9671 . - . ID=Physo144911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3220001;logic_name=jgi_physo1_1 scaffold_322 ensembl transcript 5657 9671 . - . ID=Physo144911;Parent=Physo144911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_322 . CDS 5657 6706 . - 0 ID=Physo144911;Parent=Physo144911;rank=5 scaffold_322 . exon 5657 6706 . - . ID=Physo144911.5;Parent=Physo144911;constitutive=1;rank=5 scaffold_322 . CDS 6805 6906 . - 0 ID=Physo144911;Parent=Physo144911;rank=4 scaffold_322 . exon 6805 6906 . - . ID=Physo144911.4;Parent=Physo144911;constitutive=1;rank=4 scaffold_322 . CDS 7342 8352 . - 0 ID=Physo144911;Parent=Physo144911;rank=3 scaffold_322 . exon 7342 8352 . - . ID=Physo144911.3;Parent=Physo144911;constitutive=1;rank=3 scaffold_322 . CDS 8457 8860 . - 0 ID=Physo144911;Parent=Physo144911;rank=2 scaffold_322 . CDS 8948 9671 . - 0 ID=Physo144911;Parent=Physo144911;rank=1 scaffold_322 ensembl protein_coding_gene 14473 15147 . - . ID=Physo109690;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_3220001;logic_name=jgi_physo1_1 scaffold_322 ensembl transcript 14473 15147 . - . ID=Physo109690;Parent=Physo109690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_322 . CDS 14473 15126 . - 0 ID=Physo109690;Parent=Physo109690;rank=1 scaffold_322 . exon 14473 15147 . - . ID=Physo109690.1;Parent=Physo109690;constitutive=1;ensembl_phase=-1;rank=1 scaffold_322 . exon 8457 8860 . - . ID=Physo144911.2;Parent=Physo144911;constitutive=1;ensembl_phase=1;rank=2 scaffold_322 . exon 8948 9671 . - . ID=Physo144911.1;Parent=Physo144911;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_322 ensembl protein_coding_gene 10484 13490 . - . ID=Physo144912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3220002;logic_name=jgi_physo1_1 scaffold_322 ensembl transcript 10484 13490 . - . ID=Physo144912;Parent=Physo144912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_322 . CDS 10484 10505 . - 0 ID=Physo144912;Parent=Physo144912;rank=3 scaffold_322 . exon 10484 10505 . - . ID=Physo144912.3;Parent=Physo144912;constitutive=1;ensembl_phase=2;rank=3 scaffold_322 . CDS 10842 11972 . - 0 ID=Physo144912;Parent=Physo144912;rank=2 scaffold_322 . exon 10842 11972 . - . ID=Physo144912.2;Parent=Physo144912;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_322 . CDS 12115 13490 . - 0 ID=Physo144912;Parent=Physo144912;rank=1 scaffold_322 . exon 12115 13490 . - . ID=Physo144912.1;Parent=Physo144912;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_311 1 15247 scaffold_311 . repeat_region 363 373 . ? . description=dust scaffold_311 . biological_region 390 401 0.999 + . logic_name=eponine scaffold_311 . repeat_region 2447 4916 . ? . description=dust scaffold_311 . repeat_region 9683 9748 . ? . description=trf scaffold_311 . repeat_region 13390 13425 . ? . description=trf scaffold_311 ensembl protein_coding_gene 13429 15110 . - . ID=Physo144896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3110001;logic_name=jgi_physo1_1 scaffold_311 ensembl transcript 13429 15110 . - . ID=Physo144896;Parent=Physo144896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_311 . CDS 13429 14098 . - 0 ID=Physo144896;Parent=Physo144896;rank=3 scaffold_311 . exon 13429 14098 . - . ID=Physo144896.3;Parent=Physo144896;constitutive=1;ensembl_phase=2;rank=3 scaffold_311 . CDS 14450 14955 . - 0 ID=Physo144896;Parent=Physo144896;rank=2 scaffold_311 . exon 14450 14955 . - . ID=Physo144896.2;Parent=Physo144896;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_311 . CDS 15000 15110 . - 0 ID=Physo144896;Parent=Physo144896;rank=1 scaffold_311 . exon 15000 15110 . - . ID=Physo144896.1;Parent=Physo144896;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_319 1 15264 scaffold_319 . biological_region 626 628 0.999 - . logic_name=eponine scaffold_319 . biological_region 1699 1701 0.999 - . logic_name=eponine scaffold_319 . repeat_region 2195 3183 . ? . description=dust scaffold_319 . biological_region 4833 4833 0.999 - . logic_name=eponine scaffold_319 . biological_region 4889 4890 0.999 + . logic_name=eponine scaffold_319 . biological_region 4889 4890 0.999 - . logic_name=eponine scaffold_319 . repeat_region 5843 7129 . ? . description=dust scaffold_319 ensembl protein_coding_gene 1 1333 . + . ID=Physo144907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3190001;logic_name=jgi_physo1_1 scaffold_319 ensembl transcript 1 1333 . + . ID=Physo144907;Parent=Physo144907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_319 . exon 1 106 . + . ID=Physo144907.1;Parent=Physo144907;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_319 . exon 222 1333 . + . ID=Physo144907.2;Parent=Physo144907;constitutive=1;ensembl_phase=-1;rank=2 scaffold_319 . CDS 326 1333 . + 0 ID=Physo144907;Parent=Physo144907;rank=1 scaffold_319 ensembl protein_coding_gene 1426 2194 . - . ID=Physo144908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3190002;logic_name=jgi_physo1_1 scaffold_319 ensembl transcript 1426 2194 . - . ID=Physo144908;Parent=Physo144908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_319 . CDS 1426 2115 . - 0 ID=Physo144908;Parent=Physo144908;rank=1 scaffold_319 . exon 1426 2194 . - . ID=Physo144908.1;Parent=Physo144908;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_310 1 15429 scaffold_310 . biological_region 259 265 0.999 + . logic_name=eponine scaffold_310 . repeat_region 279 298 . ? . description=trf scaffold_310 . biological_region 287 292 0.999 - . logic_name=eponine scaffold_310 . biological_region 426 431 0.999 + . logic_name=eponine scaffold_310 . biological_region 447 448 0.999 + . logic_name=eponine scaffold_310 . repeat_region 798 847 . ? . description=dust scaffold_310 . biological_region 1352 1355 0.999 + . logic_name=eponine scaffold_310 . repeat_region 1514 6063 . ? . description=dust scaffold_310 . repeat_region 6529 6536 . ? . description=dust scaffold_310 . repeat_region 6858 6881 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_309 1 15477 scaffold_309 . repeat_region 921 3876 . ? . description=dust scaffold_309 . repeat_region 5095 5648 . ? . description=dust scaffold_309 . repeat_region 7565 7600 . ? . description=trf scaffold_309 . repeat_region 7661 7713 . ? . description=trf scaffold_309 . repeat_region 7661 7713 . ? . description=trf scaffold_309 ensembl protein_coding_gene 7 757 . + . ID=Physo144892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3090001;logic_name=jgi_physo1_1 scaffold_309 ensembl transcript 7 757 . + . ID=Physo144892;Parent=Physo144892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_309 . CDS 7 667 . + 0 ID=Physo144892;Parent=Physo144892;rank=1 scaffold_309 . exon 7 667 . + . ID=Physo144892.1;Parent=Physo144892;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_309 . CDS 753 757 . + 0 ID=Physo144892;Parent=Physo144892;rank=2 scaffold_309 . exon 753 757 . + . ID=Physo144892.2;Parent=Physo144892;constitutive=1;ensembl_phase=1;rank=2 scaffold_309 ensembl protein_coding_gene 12478 12735 . - . ID=Physo125623;biotype=protein_coding;external_name=estExt_Genewise1.C_3090001;logic_name=jgi_physo1_1 scaffold_309 ensembl transcript 12478 12735 . - . ID=Physo125623;Parent=Physo125623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_309 . CDS 12478 12714 . - 0 ID=Physo125623;Parent=Physo125623;rank=1 scaffold_309 . exon 12478 12735 . - . ID=Physo125623.1;Parent=Physo125623;constitutive=1;ensembl_phase=-1;rank=1 scaffold_309 ensembl protein_coding_gene 8326 9725 . - . ID=Physo144893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3090002;logic_name=jgi_physo1_1 scaffold_309 ensembl transcript 8326 9725 . - . ID=Physo144893;Parent=Physo144893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_309 . CDS 8326 8892 . - 0 ID=Physo144893;Parent=Physo144893;rank=4 scaffold_309 . exon 8326 8892 . - . ID=Physo144893.4;Parent=Physo144893;constitutive=1;rank=4 scaffold_309 . CDS 8918 9109 . - 0 ID=Physo144893;Parent=Physo144893;rank=3 scaffold_309 . exon 8918 9109 . - . ID=Physo144893.3;Parent=Physo144893;constitutive=1;rank=3 scaffold_309 . CDS 9163 9570 . - 0 ID=Physo144893;Parent=Physo144893;rank=2 scaffold_309 . exon 9163 9570 . - . ID=Physo144893.2;Parent=Physo144893;constitutive=1;rank=2 scaffold_309 . CDS 9657 9725 . - 0 ID=Physo144893;Parent=Physo144893;rank=1 scaffold_309 . exon 9657 9725 . - . ID=Physo144893.1;Parent=Physo144893;constitutive=1;rank=1 scaffold_309 ensembl protein_coding_gene 12817 15094 . - . ID=Physo144895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3090004;logic_name=jgi_physo1_1 scaffold_309 ensembl transcript 12817 15094 . - . ID=Physo144895;Parent=Physo144895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_309 . CDS 12817 13091 . - 0 ID=Physo144895;Parent=Physo144895;rank=3 scaffold_309 . exon 12817 13091 . - . ID=Physo144895.3;Parent=Physo144895;constitutive=1;ensembl_phase=1;rank=3 scaffold_309 . CDS 14450 14757 . - 0 ID=Physo144895;Parent=Physo144895;rank=2 scaffold_309 . exon 14450 14757 . - . ID=Physo144895.2;Parent=Physo144895;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_309 . CDS 14838 15094 . - 0 ID=Physo144895;Parent=Physo144895;rank=1 scaffold_309 . exon 14838 15094 . - . ID=Physo144895.1;Parent=Physo144895;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_312 1 15541 scaffold_312 . repeat_region 2841 3525 . ? . description=dust scaffold_312 . repeat_region 4941 8647 . ? . description=dust scaffold_312 . biological_region 8795 8797 0.999 + . logic_name=eponine scaffold_312 . repeat_region 9190 9225 . ? . description=trf scaffold_312 . repeat_region 9444 9503 . ? . description=trf scaffold_312 . repeat_region 9451 9500 . ? . description=trf scaffold_312 . repeat_region 9526 9592 . ? . description=trf scaffold_312 . repeat_region 9982 10012 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_308 1 15778 scaffold_308 . biological_region 986 993 0.999 - . logic_name=eponine scaffold_308 . repeat_region 1480 6920 . ? . description=dust scaffold_308 ensembl protein_coding_gene 180 1154 . - . ID=Physo144888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3080001;logic_name=jgi_physo1_1 scaffold_308 ensembl transcript 180 1154 . - . ID=Physo144888;Parent=Physo144888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_308 . CDS 180 793 . - 0 ID=Physo144888;Parent=Physo144888;rank=2 scaffold_308 . exon 180 793 . - . ID=Physo144888.2;Parent=Physo144888;constitutive=1;ensembl_phase=1;rank=2 scaffold_308 . CDS 866 1154 . - 0 ID=Physo144888;Parent=Physo144888;rank=1 scaffold_308 . exon 866 1154 . - . ID=Physo144888.1;Parent=Physo144888;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_308 ensembl protein_coding_gene 10219 11038 . + . ID=Physo144889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3080002;logic_name=jgi_physo1_1 scaffold_308 ensembl transcript 10219 11038 . + . ID=Physo144889;Parent=Physo144889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_308 . CDS 10219 10985 . + 0 ID=Physo144889;Parent=Physo144889;rank=1 scaffold_308 . exon 10219 10985 . + . ID=Physo144889.1;Parent=Physo144889;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_308 . CDS 11020 11038 . + 0 ID=Physo144889;Parent=Physo144889;rank=2 scaffold_308 . exon 11020 11038 . + . ID=Physo144889.2;Parent=Physo144889;constitutive=1;ensembl_phase=2;rank=2 scaffold_308 ensembl protein_coding_gene 12830 14146 . - . ID=Physo144890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3080003;logic_name=jgi_physo1_1 scaffold_308 ensembl transcript 12830 14146 . - . ID=Physo144890;Parent=Physo144890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_308 . CDS 12830 14146 . - 0 ID=Physo144890;Parent=Physo144890;rank=1 scaffold_308 . exon 12830 14146 . - . ID=Physo144890.1;Parent=Physo144890;constitutive=1;rank=1 scaffold_308 ensembl protein_coding_gene 14314 15382 . + . ID=Physo144891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3080004;logic_name=jgi_physo1_1 scaffold_308 ensembl transcript 14314 15382 . + . ID=Physo144891;Parent=Physo144891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_308 . CDS 14314 15381 . + 0 ID=Physo144891;Parent=Physo144891;rank=1 scaffold_308 . exon 14314 15382 . + . ID=Physo144891.1;Parent=Physo144891;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_307 1 15811 scaffold_307 . biological_region 4063 4066 0.999 + . logic_name=eponine scaffold_307 . repeat_region 4901 4908 . ? . description=dust scaffold_307 . repeat_region 11995 12039 . ? . description=trf scaffold_307 . repeat_region 12665 12703 . ? . description=trf scaffold_307 . repeat_region 13618 13657 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_306 1 15974 scaffold_306 . biological_region 888 894 0.999 + . logic_name=eponine scaffold_306 . biological_region 956 959 0.999 - . logic_name=eponine scaffold_306 . biological_region 1419 1421 0.999 - . logic_name=eponine scaffold_306 . repeat_region 1690 3410 . ? . description=dust scaffold_306 . repeat_region 4643 5721 . ? . description=dust scaffold_306 . biological_region 5810 5820 0.999 - . logic_name=eponine scaffold_306 . repeat_region 5836 5845 . ? . description=dust scaffold_306 ensembl protein_coding_gene 3828 4642 . - . ID=Physo144885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3060001;logic_name=jgi_physo1_1 scaffold_306 ensembl transcript 3828 4642 . - . ID=Physo144885;Parent=Physo144885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_306 . CDS 3828 3836 . - 0 ID=Physo144885;Parent=Physo144885;rank=3 scaffold_306 . exon 3828 3836 . - . ID=Physo144885.3;Parent=Physo144885;constitutive=1;rank=3 scaffold_306 . CDS 3900 4445 . - 0 ID=Physo144885;Parent=Physo144885;rank=2 scaffold_306 . exon 3900 4445 . - . ID=Physo144885.2;Parent=Physo144885;constitutive=1;rank=2 scaffold_306 . CDS 4493 4642 . - 0 ID=Physo144885;Parent=Physo144885;rank=1 scaffold_306 . exon 4493 4642 . - . ID=Physo144885.1;Parent=Physo144885;constitutive=1;rank=1 scaffold_306 ensembl protein_coding_gene 7965 9941 . - . ID=Physo144886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3060002;logic_name=jgi_physo1_1 scaffold_306 ensembl transcript 7965 9941 . - . ID=Physo144886;Parent=Physo144886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_306 . CDS 7965 8082 . - 0 ID=Physo144886;Parent=Physo144886;rank=6 scaffold_306 . exon 7965 8082 . - . ID=Physo144886.6;Parent=Physo144886;constitutive=1;ensembl_phase=2;rank=6 scaffold_306 . CDS 8446 8695 . - 0 ID=Physo144886;Parent=Physo144886;rank=5 scaffold_306 . CDS 8998 9076 . - 0 ID=Physo144886;Parent=Physo144886;rank=4 scaffold_306 . CDS 9248 9547 . - 0 ID=Physo144886;Parent=Physo144886;rank=3 scaffold_306 . CDS 9597 9831 . - 0 ID=Physo144886;Parent=Physo144886;rank=2 scaffold_306 . CDS 9868 9941 . - 0 ID=Physo144886;Parent=Physo144886;rank=1 scaffold_306 . repeat_region 12930 12958 . ? . description=trf scaffold_306 . exon 8446 8695 . - . ID=Physo144886.5;Parent=Physo144886;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_306 . exon 8998 9076 . - . ID=Physo144886.4;Parent=Physo144886;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_306 . exon 9248 9547 . - . ID=Physo144886.3;Parent=Physo144886;constitutive=1;rank=3 scaffold_306 . exon 9597 9831 . - . ID=Physo144886.2;Parent=Physo144886;constitutive=1;ensembl_phase=2;rank=2 scaffold_306 . exon 9868 9941 . - . ID=Physo144886.1;Parent=Physo144886;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_306 ensembl protein_coding_gene 10330 12586 . + . ID=Physo144887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3060003;logic_name=jgi_physo1_1 scaffold_306 ensembl transcript 10330 12586 . + . ID=Physo144887;Parent=Physo144887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_306 . CDS 10330 10688 . + 0 ID=Physo144887;Parent=Physo144887;rank=1 scaffold_306 . exon 10330 10688 . + . ID=Physo144887.1;Parent=Physo144887;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_306 . CDS 10720 10939 . + 0 ID=Physo144887;Parent=Physo144887;rank=2 scaffold_306 . exon 10720 10939 . + . ID=Physo144887.2;Parent=Physo144887;constitutive=1;ensembl_phase=2;rank=2 scaffold_306 . CDS 11101 11230 . + 0 ID=Physo144887;Parent=Physo144887;rank=3 scaffold_306 . exon 11101 11230 . + . ID=Physo144887.3;Parent=Physo144887;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_306 . CDS 11401 11595 . + 0 ID=Physo144887;Parent=Physo144887;rank=4 scaffold_306 . exon 11401 11595 . + . ID=Physo144887.4;Parent=Physo144887;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_306 . CDS 11751 12171 . + 0 ID=Physo144887;Parent=Physo144887;rank=5 scaffold_306 . exon 11751 12171 . + . ID=Physo144887.5;Parent=Physo144887;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_306 . CDS 12274 12586 . + 0 ID=Physo144887;Parent=Physo144887;rank=6 scaffold_306 . exon 12274 12586 . + . ID=Physo144887.6;Parent=Physo144887;constitutive=1;ensembl_phase=2;rank=6 ##gff-version 3 ##sequence-region scaffold_297 1 16021 scaffold_297 . biological_region 387 389 0.999 + . logic_name=eponine scaffold_297 . repeat_region 1872 1879 . ? . description=dust scaffold_297 . repeat_region 2224 3764 . ? . description=dust scaffold_297 . repeat_region 4949 7293 . ? . description=dust scaffold_297 ensembl protein_coding_gene 11 1090 . - . ID=Physo144872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2970001;logic_name=jgi_physo1_1 scaffold_297 ensembl transcript 11 1090 . - . ID=Physo144872;Parent=Physo144872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_297 . CDS 11 923 . - 0 ID=Physo144872;Parent=Physo144872;rank=2 scaffold_297 . exon 11 923 . - . ID=Physo144872.2;Parent=Physo144872;constitutive=1;ensembl_phase=2;rank=2 scaffold_297 . CDS 999 1090 . - 0 ID=Physo144872;Parent=Physo144872;rank=1 scaffold_297 . exon 999 1090 . - . ID=Physo144872.1;Parent=Physo144872;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_305 1 16132 scaffold_305 . repeat_region 1 715 . ? . description=trf scaffold_305 . repeat_region 752 801 . ? . description=dust scaffold_305 . repeat_region 4282 8224 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_303 1 16160 scaffold_303 . repeat_region 1058 2012 . ? . description=dust scaffold_303 . biological_region 3317 3322 0.999 - . logic_name=eponine scaffold_303 . biological_region 3866 3870 0.999 + . logic_name=eponine scaffold_303 . repeat_region 4484 4762 . - . description=GypsyPi-1c_I-int scaffold_303 . repeat_region 4893 4912 . ? . description=dust scaffold_303 . repeat_region 4893 4912 . ? . description=trf scaffold_303 . repeat_region 5035 7302 . - . description=GypsyPi-1c_I-int scaffold_303 . biological_region 5182 5183 0.999 - . logic_name=eponine scaffold_303 . biological_region 5896 5897 0.999 + . logic_name=eponine scaffold_303 . biological_region 7195 7196 0.999 - . logic_name=eponine scaffold_303 . biological_region 7621 7624 0.999 - . logic_name=eponine scaffold_303 ensembl protein_coding_gene 4490 7297 . - . ID=Physo125608;biotype=protein_coding;external_name=estExt_Genewise1.C_3030002;logic_name=jgi_physo1_1 scaffold_303 ensembl transcript 4490 7297 . - . ID=Physo125608;Parent=Physo125608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_303 . CDS 4490 4825 . - 0 ID=Physo125608;Parent=Physo125608;rank=2 scaffold_303 . exon 4490 4825 . - . ID=Physo125608.2;Parent=Physo125608;constitutive=1;rank=2 scaffold_303 . CDS 5060 7081 . - 0 ID=Physo125608;Parent=Physo125608;rank=1 scaffold_303 . exon 5060 7297 . - . ID=Physo125608.1;Parent=Physo125608;constitutive=1;ensembl_phase=-1;rank=1 scaffold_303 ensembl protein_coding_gene 12579 14783 . + . ID=Physo144881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3030002;logic_name=jgi_physo1_1 scaffold_303 ensembl transcript 12579 14783 . + . ID=Physo144881;Parent=Physo144881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_303 . CDS 12579 14783 . + 0 ID=Physo144881;Parent=Physo144881;rank=1 scaffold_303 . exon 12579 14783 . + . ID=Physo144881.1;Parent=Physo144881;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_300 1 16226 scaffold_300 . repeat_region 1589 1750 . ? . description=trf scaffold_300 . repeat_region 2108 7510 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_302 1 16270 scaffold_302 . repeat_region 400 408 . ? . description=dust scaffold_302 . repeat_region 1694 7045 . ? . description=dust scaffold_302 . biological_region 7092 7093 0.999 + . logic_name=eponine scaffold_302 . biological_region 7115 7116 0.999 + . logic_name=eponine scaffold_302 . biological_region 7217 7222 0.999 - . logic_name=eponine scaffold_302 . biological_region 7310 7311 0.999 - . logic_name=eponine scaffold_302 ensembl protein_coding_gene 727 1490 . - . ID=Physo144878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3020001;logic_name=jgi_physo1_1 scaffold_302 ensembl transcript 727 1490 . - . ID=Physo144878;Parent=Physo144878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_302 . CDS 727 1408 . - 0 ID=Physo144878;Parent=Physo144878;rank=2 scaffold_302 . exon 727 1408 . - . ID=Physo144878.2;Parent=Physo144878;constitutive=1;ensembl_phase=2;rank=2 scaffold_302 . CDS 1447 1490 . - 0 ID=Physo144878;Parent=Physo144878;rank=1 scaffold_302 . exon 1447 1490 . - . ID=Physo144878.1;Parent=Physo144878;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_302 ensembl protein_coding_gene 7668 8417 . - . ID=Physo144879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3020002;logic_name=jgi_physo1_1 scaffold_302 ensembl transcript 7668 8417 . - . ID=Physo144879;Parent=Physo144879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_302 . CDS 7668 8417 . - 0 ID=Physo144879;Parent=Physo144879;rank=1 scaffold_302 . exon 7668 8417 . - . ID=Physo144879.1;Parent=Physo144879;constitutive=1;rank=1 scaffold_302 . repeat_region 14958 15481 . + . description=GypsyPi-1c_I-int scaffold_302 . repeat_region 15592 16266 . - . description=GypsyPi-1c_I-int scaffold_302 ensembl protein_coding_gene 15907 16261 . - . ID=Physo125606;biotype=protein_coding;external_name=estExt_Genewise1.C_3020001;logic_name=jgi_physo1_1 scaffold_302 ensembl transcript 15907 16261 . - . ID=Physo125606;Parent=Physo125606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_302 . exon 15907 16261 . - . ID=Physo125606.1;Parent=Physo125606;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_302 . CDS 16070 16261 . - 0 ID=Physo125606;Parent=Physo125606;rank=1 ##gff-version 3 ##sequence-region scaffold_301 1 16279 scaffold_301 . biological_region 1348 1349 0.999 - . logic_name=eponine scaffold_301 . repeat_region 1771 2848 . ? . description=dust scaffold_301 . repeat_region 3658 3849 . ? . description=trf scaffold_301 . repeat_region 4509 5287 . ? . description=dust scaffold_301 . repeat_region 5740 5790 . ? . description=dust scaffold_301 . repeat_region 6036 7382 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_298 1 16309 scaffold_298 . repeat_region 1087 4191 . ? . description=dust scaffold_298 . repeat_region 5192 5341 . ? . description=dust scaffold_298 . repeat_region 5545 5602 . ? . description=dust scaffold_298 . repeat_region 5546 5602 . ? . description=trf scaffold_298 . repeat_region 5569 5690 . ? . description=trf scaffold_298 . repeat_region 5617 5810 . ? . description=trf scaffold_298 . repeat_region 6989 7012 . ? . description=dust scaffold_298 . biological_region 7051 7055 0.999 + . logic_name=eponine scaffold_298 . biological_region 7087 7087 0.999 - . logic_name=eponine scaffold_298 . repeat_region 8133 8182 . ? . description=dust scaffold_298 . repeat_region 14885 16281 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_304 1 16509 scaffold_304 . repeat_region 2303 2666 . ? . description=dust scaffold_304 . repeat_region 4034 6721 . ? . description=dust scaffold_304 ensembl protein_coding_gene 366 1575 . - . ID=Physo144882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3040001;logic_name=jgi_physo1_1 scaffold_304 ensembl transcript 366 1575 . - . ID=Physo144882;Parent=Physo144882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_304 . CDS 366 1378 . - 0 ID=Physo144882;Parent=Physo144882;rank=2 scaffold_304 . exon 366 1378 . - . ID=Physo144882.2;Parent=Physo144882;constitutive=1;ensembl_phase=1;rank=2 scaffold_304 . CDS 1449 1575 . - 0 ID=Physo144882;Parent=Physo144882;rank=1 scaffold_304 . exon 1449 1575 . - . ID=Physo144882.1;Parent=Physo144882;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_304 ensembl protein_coding_gene 1817 3632 . + . ID=Physo144883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3040002;logic_name=jgi_physo1_1 scaffold_304 ensembl transcript 1817 3632 . + . ID=Physo144883;Parent=Physo144883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_304 . CDS 1817 1999 . + 0 ID=Physo144883;Parent=Physo144883;rank=1 scaffold_304 . exon 1817 1999 . + . ID=Physo144883.1;Parent=Physo144883;constitutive=1;rank=1 scaffold_304 . CDS 2075 2145 . + 0 ID=Physo144883;Parent=Physo144883;rank=2 scaffold_304 . exon 2075 2145 . + . ID=Physo144883.2;Parent=Physo144883;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_304 . CDS 2681 2777 . + 0 ID=Physo144883;Parent=Physo144883;rank=3 scaffold_304 . exon 2681 2777 . + . ID=Physo144883.3;Parent=Physo144883;constitutive=1;ensembl_phase=2;rank=3 scaffold_304 . CDS 2921 3114 . + 0 ID=Physo144883;Parent=Physo144883;rank=4 scaffold_304 . exon 2921 3114 . + . ID=Physo144883.4;Parent=Physo144883;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_304 . CDS 3179 3209 . + 0 ID=Physo144883;Parent=Physo144883;rank=5 scaffold_304 . exon 3179 3209 . + . ID=Physo144883.5;Parent=Physo144883;constitutive=1;ensembl_phase=2;rank=5 scaffold_304 . CDS 3420 3515 . + 0 ID=Physo144883;Parent=Physo144883;rank=6 scaffold_304 . exon 3420 3515 . + . ID=Physo144883.6;Parent=Physo144883;constitutive=1;rank=6 scaffold_304 . CDS 3543 3632 . + 0 ID=Physo144883;Parent=Physo144883;rank=7 scaffold_304 . exon 3543 3632 . + . ID=Physo144883.7;Parent=Physo144883;constitutive=1;rank=7 scaffold_304 . biological_region 9285 9287 0.999 + . logic_name=eponine scaffold_304 ensembl protein_coding_gene 15993 16509 . - . ID=Physo144884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_3040003;logic_name=jgi_physo1_1 scaffold_304 ensembl transcript 15993 16509 . - . ID=Physo144884;Parent=Physo144884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_304 . exon 15993 16370 . - . ID=Physo144884.2;Parent=Physo144884;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_304 . CDS 16055 16370 . - 0 ID=Physo144884;Parent=Physo144884;rank=2 scaffold_304 . CDS 16449 16504 . - 0 ID=Physo144884;Parent=Physo144884;rank=1 scaffold_304 . exon 16449 16509 . - . ID=Physo144884.1;Parent=Physo144884;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_299 1 16555 scaffold_299 . biological_region 353 357 0.999 - . logic_name=eponine scaffold_299 . repeat_region 1481 2545 . ? . description=dust scaffold_299 . repeat_region 2586 2593 . ? . description=dust scaffold_299 . biological_region 4314 4317 0.999 + . logic_name=eponine scaffold_299 . repeat_region 4612 4661 . ? . description=dust scaffold_299 . repeat_region 5764 5797 . ? . description=trf scaffold_299 . biological_region 6657 6660 0.999 + . logic_name=eponine scaffold_299 ensembl protein_coding_gene 811 1320 . - . ID=Physo144873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2990001;logic_name=jgi_physo1_1 scaffold_299 ensembl transcript 811 1320 . - . ID=Physo144873;Parent=Physo144873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_299 . CDS 811 1320 . - 0 ID=Physo144873;Parent=Physo144873;rank=1 scaffold_299 . exon 811 1320 . - . ID=Physo144873.1;Parent=Physo144873;constitutive=1;rank=1 scaffold_299 ensembl protein_coding_gene 2915 4506 . + . ID=Physo144874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2990002;logic_name=jgi_physo1_1 scaffold_299 ensembl transcript 2915 4506 . + . ID=Physo144874;Parent=Physo144874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_299 . CDS 2915 3273 . + 0 ID=Physo144874;Parent=Physo144874;rank=1 scaffold_299 . exon 2915 3273 . + . ID=Physo144874.1;Parent=Physo144874;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_299 . CDS 3335 3624 . + 0 ID=Physo144874;Parent=Physo144874;rank=2 scaffold_299 . exon 3335 3624 . + . ID=Physo144874.2;Parent=Physo144874;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_299 . CDS 3762 3790 . + 0 ID=Physo144874;Parent=Physo144874;rank=3 scaffold_299 . exon 3762 3790 . + . ID=Physo144874.3;Parent=Physo144874;constitutive=1;ensembl_phase=1;rank=3 scaffold_299 . CDS 3934 4192 . + 0 ID=Physo144874;Parent=Physo144874;rank=4 scaffold_299 . exon 3934 4192 . + . ID=Physo144874.4;Parent=Physo144874;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_299 . CDS 4289 4506 . + 0 ID=Physo144874;Parent=Physo144874;rank=5 scaffold_299 . exon 4289 4506 . + . ID=Physo144874.5;Parent=Physo144874;constitutive=1;ensembl_phase=1;rank=5 scaffold_299 ensembl protein_coding_gene 9789 10858 . + . ID=Physo109685;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2990001;logic_name=jgi_physo1_1 scaffold_299 ensembl transcript 9789 10858 . + . ID=Physo109685;Parent=Physo109685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_299 . CDS 9789 10306 . + 0 ID=Physo109685;Parent=Physo109685;rank=1 scaffold_299 . exon 9789 10306 . + . ID=Physo109685.1;Parent=Physo109685;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_299 . CDS 10333 10797 . + 0 ID=Physo109685;Parent=Physo109685;rank=2 scaffold_299 . exon 10333 10797 . + . ID=Physo109685.2;Parent=Physo109685;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_299 . CDS 10840 10858 . + 0 ID=Physo109685;Parent=Physo109685;rank=3 scaffold_299 . exon 10840 10858 . + . ID=Physo109685.3;Parent=Physo109685;constitutive=1;ensembl_phase=2;rank=3 scaffold_299 ensembl protein_coding_gene 15209 16370 . - . ID=Physo109686;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2990002;logic_name=jgi_physo1_1 scaffold_299 ensembl transcript 15209 16370 . - . ID=Physo109686;Parent=Physo109686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_299 . exon 15209 16370 . - . ID=Physo109686.1;Parent=Physo109686;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_299 . CDS 15303 16370 . - 0 ID=Physo109686;Parent=Physo109686;rank=1 scaffold_299 ensembl protein_coding_gene 13812 14195 . - . ID=Physo144876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2990004;logic_name=jgi_physo1_1 scaffold_299 ensembl transcript 13812 14195 . - . ID=Physo144876;Parent=Physo144876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_299 . CDS 13812 14195 . - 0 ID=Physo144876;Parent=Physo144876;rank=1 scaffold_299 . exon 13812 14195 . - . ID=Physo144876.1;Parent=Physo144876;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_296 1 16652 scaffold_296 . repeat_region 1707 2301 . ? . description=dust scaffold_296 . repeat_region 2650 3449 . - . description=GypsyPi-1c_I-int scaffold_296 . biological_region 3240 3241 0.999 - . logic_name=eponine scaffold_296 . biological_region 3560 3564 0.999 + . logic_name=eponine scaffold_296 . repeat_region 3726 4106 . - . description=GypsyPi-1c_I-int scaffold_296 . repeat_region 4124 6791 . ? . description=dust scaffold_296 . biological_region 6831 6835 0.999 + . logic_name=eponine scaffold_296 . biological_region 7079 7079 0.999 + . logic_name=eponine scaffold_296 . repeat_region 8214 9369 . ? . description=dust scaffold_296 ensembl protein_coding_gene 2814 3197 . - . ID=Physo125599;biotype=protein_coding;external_name=estExt_Genewise1.C_2960003;logic_name=jgi_physo1_1 scaffold_296 ensembl transcript 2814 3197 . - . ID=Physo125599;Parent=Physo125599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_296 . CDS 2814 3194 . - 0 ID=Physo125599;Parent=Physo125599;rank=1 scaffold_296 . exon 2814 3197 . - . ID=Physo125599.1;Parent=Physo125599;constitutive=1;ensembl_phase=-1;rank=1 scaffold_296 ensembl protein_coding_gene 6945 7403 . - . ID=Physo144871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2960002;logic_name=jgi_physo1_1 scaffold_296 ensembl transcript 6945 7403 . - . ID=Physo144871;Parent=Physo144871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_296 . CDS 6945 7403 . - 0 ID=Physo144871;Parent=Physo144871;rank=1 scaffold_296 . exon 6945 7403 . - . ID=Physo144871.1;Parent=Physo144871;constitutive=1;rank=1 scaffold_296 . repeat_region 16157 16186 . - . description=Polinton-1_PI scaffold_296 . repeat_region 16359 16652 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_295 1 16837 scaffold_295 . repeat_region 1024 1039 . ? . description=dust scaffold_295 . repeat_region 1349 1359 . ? . description=dust scaffold_295 . repeat_region 2486 3607 . ? . description=dust scaffold_295 . biological_region 3664 3666 0.999 + . logic_name=eponine scaffold_295 . biological_region 3706 3712 0.999 + . logic_name=eponine scaffold_295 . biological_region 3795 3802 0.999 - . logic_name=eponine scaffold_295 . biological_region 3820 3824 0.999 - . logic_name=eponine scaffold_295 . biological_region 4909 4914 0.999 + . logic_name=eponine scaffold_295 . biological_region 5024 5025 0.999 - . logic_name=eponine scaffold_295 . repeat_region 5233 5615 . ? . description=dust scaffold_295 . repeat_region 8604 8682 . ? . description=trf scaffold_295 . repeat_region 10911 10943 . ? . description=trf scaffold_295 . repeat_region 10991 11068 . ? . description=trf scaffold_295 . repeat_region 10999 11104 . ? . description=trf scaffold_295 . repeat_region 10999 11104 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_294 1 16864 scaffold_294 . biological_region 2071 2075 0.999 - . logic_name=eponine scaffold_294 . biological_region 3915 3919 0.999 + . logic_name=eponine scaffold_294 . repeat_region 4122 4129 . ? . description=dust scaffold_294 . repeat_region 5295 5370 . ? . description=trf scaffold_294 . repeat_region 7247 7260 . ? . description=dust scaffold_294 ensembl protein_coding_gene 4079 6259 . - . ID=Physo144869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2940001;logic_name=jgi_physo1_1 scaffold_294 ensembl transcript 4079 6259 . - . ID=Physo144869;Parent=Physo144869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_294 . CDS 4079 4088 . - 0 ID=Physo144869;Parent=Physo144869;rank=5 scaffold_294 . exon 4079 4088 . - . ID=Physo144869.5;Parent=Physo144869;constitutive=1;ensembl_phase=2;rank=5 scaffold_294 . CDS 4136 4231 . - 0 ID=Physo144869;Parent=Physo144869;rank=4 scaffold_294 . exon 4136 4231 . - . ID=Physo144869.4;Parent=Physo144869;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_294 . CDS 4637 5225 . - 0 ID=Physo144869;Parent=Physo144869;rank=3 scaffold_294 . exon 4637 5225 . - . ID=Physo144869.3;Parent=Physo144869;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_294 . CDS 5372 5929 . - 0 ID=Physo144869;Parent=Physo144869;rank=2 scaffold_294 . exon 5372 5929 . - . ID=Physo144869.2;Parent=Physo144869;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_294 . CDS 5995 6259 . - 0 ID=Physo144869;Parent=Physo144869;rank=1 scaffold_294 . exon 5995 6259 . - . ID=Physo144869.1;Parent=Physo144869;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_294 ensembl protein_coding_gene 12060 12407 . + . ID=Physo125596;biotype=protein_coding;external_name=estExt_Genewise1.C_2940001;logic_name=jgi_physo1_1 scaffold_294 ensembl transcript 12060 12407 . + . ID=Physo125596;Parent=Physo125596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_294 . exon 12060 12407 . + . ID=Physo125596.1;Parent=Physo125596;constitutive=1;ensembl_phase=-1;rank=1 scaffold_294 . CDS 12138 12407 . + 0 ID=Physo125596;Parent=Physo125596;rank=1 ##gff-version 3 ##sequence-region scaffold_184 1 16962 scaffold_184 . repeat_region 1364 1428 . ? . description=dust scaffold_184 . repeat_region 1369 1416 . ? . description=trf scaffold_184 . repeat_region 1372 1416 . ? . description=trf scaffold_184 . repeat_region 1584 2998 . ? . description=dust scaffold_184 . repeat_region 3701 3722 . ? . description=dust scaffold_184 . repeat_region 4237 4302 . ? . description=dust scaffold_184 . repeat_region 5662 5739 . ? . description=trf scaffold_184 . repeat_region 5689 5743 . ? . description=dust scaffold_184 . repeat_region 5690 5739 . ? . description=trf scaffold_184 ensembl protein_coding_gene 129 314 . - . ID=Physo124888;biotype=protein_coding;external_name=estExt_Genewise1.C_1840001;logic_name=jgi_physo1_1 scaffold_184 ensembl transcript 129 314 . - . ID=Physo124888;Parent=Physo124888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_184 . exon 129 314 . - . ID=Physo124888.1;Parent=Physo124888;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_184 . CDS 131 187 . - 0 ID=Physo124888;Parent=Physo124888;rank=1 scaffold_184 ensembl protein_coding_gene 7233 11832 . + . ID=Physo144392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1840001;logic_name=jgi_physo1_1 scaffold_184 ensembl transcript 7233 11832 . + . ID=Physo144392;Parent=Physo144392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_184 . CDS 7233 7254 . + 0 ID=Physo144392;Parent=Physo144392;rank=1 scaffold_184 . exon 7233 7254 . + . ID=Physo144392.1;Parent=Physo144392;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_184 . CDS 7298 7351 . + 0 ID=Physo144392;Parent=Physo144392;rank=2 scaffold_184 . exon 7298 7351 . + . ID=Physo144392.2;Parent=Physo144392;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_184 . CDS 7372 7399 . + 0 ID=Physo144392;Parent=Physo144392;rank=3 scaffold_184 . exon 7372 7399 . + . ID=Physo144392.3;Parent=Physo144392;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_184 . CDS 7752 7812 . + 0 ID=Physo144392;Parent=Physo144392;rank=4 scaffold_184 . exon 7752 7812 . + . ID=Physo144392.4;Parent=Physo144392;constitutive=1;ensembl_phase=2;rank=4 scaffold_184 . CDS 8022 8292 . + 0 ID=Physo144392;Parent=Physo144392;rank=5 scaffold_184 . exon 8022 8292 . + . ID=Physo144392.5;Parent=Physo144392;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_184 . CDS 8404 8837 . + 0 ID=Physo144392;Parent=Physo144392;rank=6 scaffold_184 . exon 8404 8837 . + . ID=Physo144392.6;Parent=Physo144392;constitutive=1;ensembl_phase=1;rank=6 scaffold_184 . CDS 8924 9676 . + 0 ID=Physo144392;Parent=Physo144392;rank=7 scaffold_184 . CDS 9909 10010 . + 0 ID=Physo144392;Parent=Physo144392;rank=8 scaffold_184 . CDS 10060 11832 . + 0 ID=Physo144392;Parent=Physo144392;rank=9 scaffold_184 . biological_region 9314 9315 0.999 - . logic_name=eponine scaffold_184 . biological_region 9367 9372 0.999 - . logic_name=eponine scaffold_184 . biological_region 9391 9395 0.999 - . logic_name=eponine scaffold_184 . biological_region 9911 9917 0.999 - . logic_name=eponine scaffold_184 . biological_region 10018 10020 0.999 - . logic_name=eponine scaffold_184 ensembl protein_coding_gene 16133 16456 . + . ID=Physo124894;biotype=protein_coding;external_name=estExt_Genewise1.C_1840007;logic_name=jgi_physo1_1 scaffold_184 ensembl transcript 16133 16456 . + . ID=Physo124894;Parent=Physo124894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_184 . exon 16133 16456 . + . ID=Physo124894.1;Parent=Physo124894;constitutive=1;ensembl_phase=-1;rank=1 scaffold_184 . CDS 16181 16456 . + 0 ID=Physo124894;Parent=Physo124894;rank=1 scaffold_184 . exon 8924 9676 . + . ID=Physo144392.7;Parent=Physo144392;constitutive=1;rank=7 scaffold_184 . exon 9909 10010 . + . ID=Physo144392.8;Parent=Physo144392;constitutive=1;rank=8 scaffold_184 . exon 10060 11832 . + . ID=Physo144392.9;Parent=Physo144392;constitutive=1;rank=9 scaffold_184 ensembl protein_coding_gene 12601 15131 . + . ID=Physo144393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1840002;logic_name=jgi_physo1_1 scaffold_184 ensembl transcript 12601 15131 . + . ID=Physo144393;Parent=Physo144393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_184 . CDS 12601 13060 . + 0 ID=Physo144393;Parent=Physo144393;rank=1 scaffold_184 . exon 12601 13060 . + . ID=Physo144393.1;Parent=Physo144393;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_184 . CDS 13105 15131 . + 0 ID=Physo144393;Parent=Physo144393;rank=2 scaffold_184 . exon 13105 15131 . + . ID=Physo144393.2;Parent=Physo144393;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_293 1 17239 scaffold_293 . repeat_region 1193 6361 . ? . description=dust scaffold_293 . repeat_region 8046 8106 . ? . description=trf scaffold_293 . repeat_region 8229 8264 . ? . description=trf scaffold_293 . repeat_region 8270 8299 . ? . description=trf scaffold_293 . repeat_region 8339 8391 . ? . description=trf scaffold_293 . repeat_region 8339 8391 . ? . description=trf scaffold_293 ensembl protein_coding_gene 27 999 . - . ID=Physo144867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2930001;logic_name=jgi_physo1_1 scaffold_293 ensembl transcript 27 999 . - . ID=Physo144867;Parent=Physo144867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_293 . exon 27 439 . - . ID=Physo144867.3;Parent=Physo144867;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_293 . CDS 28 439 . - 0 ID=Physo144867;Parent=Physo144867;rank=3 scaffold_293 . CDS 505 569 . - 0 ID=Physo144867;Parent=Physo144867;rank=2 scaffold_293 . exon 505 569 . - . ID=Physo144867.2;Parent=Physo144867;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_293 . CDS 607 999 . - 0 ID=Physo144867;Parent=Physo144867;rank=1 scaffold_293 . exon 607 999 . - . ID=Physo144867.1;Parent=Physo144867;constitutive=1;rank=1 scaffold_293 . biological_region 16502 16502 0.999 - . logic_name=eponine scaffold_293 . biological_region 16776 16778 0.999 - . logic_name=eponine scaffold_293 ensembl protein_coding_gene 13162 17204 . + . ID=Physo144868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2930002;logic_name=jgi_physo1_1 scaffold_293 ensembl transcript 13162 17204 . + . ID=Physo144868;Parent=Physo144868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_293 . CDS 13162 14052 . + 0 ID=Physo144868;Parent=Physo144868;rank=1 scaffold_293 . exon 13162 14052 . + . ID=Physo144868.1;Parent=Physo144868;constitutive=1;rank=1 scaffold_293 . CDS 14413 17202 . + 0 ID=Physo144868;Parent=Physo144868;rank=2 scaffold_293 . exon 14413 17204 . + . ID=Physo144868.2;Parent=Physo144868;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_292 1 17344 scaffold_292 . repeat_region 40 287 . + . description=GypsyPi-1c_I-int scaffold_292 . biological_region 1398 1402 0.999 - . logic_name=eponine scaffold_292 . biological_region 1947 1953 0.999 + . logic_name=eponine scaffold_292 . biological_region 1976 1977 0.999 + . logic_name=eponine scaffold_292 . biological_region 2047 2049 0.999 - . logic_name=eponine scaffold_292 . biological_region 2064 2070 0.999 - . logic_name=eponine scaffold_292 . repeat_region 4030 4037 . ? . description=dust scaffold_292 . repeat_region 4555 4562 . ? . description=dust scaffold_292 . repeat_region 4750 4775 . ? . description=dust scaffold_292 . repeat_region 4751 4775 . ? . description=trf scaffold_292 . biological_region 7044 7050 0.999 + . logic_name=eponine scaffold_292 . biological_region 7169 7172 0.999 - . logic_name=eponine scaffold_292 . biological_region 7193 7197 0.999 - . logic_name=eponine scaffold_292 . biological_region 7248 7250 0.999 + . logic_name=eponine scaffold_292 . repeat_region 8592 8639 . ? . description=trf scaffold_292 ensembl protein_coding_gene 4863 5639 . - . ID=Physo109684;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2920001;logic_name=jgi_physo1_1 scaffold_292 ensembl transcript 4863 5639 . - . ID=Physo109684;Parent=Physo109684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_292 . CDS 4863 5639 . - 0 ID=Physo109684;Parent=Physo109684;rank=1 scaffold_292 . exon 4863 5639 . - . ID=Physo109684.1;Parent=Physo109684;constitutive=1;rank=1 scaffold_292 ensembl protein_coding_gene 757 2334 . - . ID=Physo144864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2920001;logic_name=jgi_physo1_1 scaffold_292 ensembl transcript 757 2334 . - . ID=Physo144864;Parent=Physo144864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_292 . CDS 757 2334 . - 0 ID=Physo144864;Parent=Physo144864;rank=1 scaffold_292 . exon 757 2334 . - . ID=Physo144864.1;Parent=Physo144864;constitutive=1;rank=1 scaffold_292 ensembl protein_coding_gene 6947 7378 . + . ID=Physo144866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2920003;logic_name=jgi_physo1_1 scaffold_292 ensembl transcript 6947 7378 . + . ID=Physo144866;Parent=Physo144866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_292 . CDS 6947 6958 . + 0 ID=Physo144866;Parent=Physo144866;rank=1 scaffold_292 . exon 6947 6958 . + . ID=Physo144866.1;Parent=Physo144866;constitutive=1;rank=1 scaffold_292 . CDS 7000 7158 . + 0 ID=Physo144866;Parent=Physo144866;rank=2 scaffold_292 . exon 7000 7158 . + . ID=Physo144866.2;Parent=Physo144866;constitutive=1;rank=2 scaffold_292 . CDS 7187 7378 . + 0 ID=Physo144866;Parent=Physo144866;rank=3 scaffold_292 . exon 7187 7378 . + . ID=Physo144866.3;Parent=Physo144866;constitutive=1;rank=3 scaffold_292 . repeat_region 13314 13609 . + . description=GypsyPi-1c_LTR ##gff-version 3 ##sequence-region scaffold_291 1 17524 scaffold_291 . repeat_region 1577 1587 . ? . description=dust scaffold_291 . repeat_region 1661 1669 . ? . description=dust scaffold_291 . biological_region 1948 1952 0.999 + . logic_name=eponine scaffold_291 . biological_region 2038 2043 0.999 - . logic_name=eponine scaffold_291 . biological_region 2059 2059 0.999 - . logic_name=eponine scaffold_291 . biological_region 2226 2228 0.999 - . logic_name=eponine scaffold_291 . repeat_region 3573 3725 . ? . description=trf scaffold_291 . repeat_region 3597 3692 . ? . description=trf scaffold_291 . repeat_region 3944 4709 . + . description=GypsyPi-1c_I-int scaffold_291 . repeat_region 4820 6130 . - . description=GypsyPi-1c_I-int scaffold_291 . biological_region 4893 4896 0.999 - . logic_name=eponine scaffold_291 . biological_region 6473 6473 0.999 - . logic_name=eponine scaffold_291 . biological_region 6623 6625 0.999 - . logic_name=eponine scaffold_291 . biological_region 6661 6662 0.999 + . logic_name=eponine scaffold_291 . biological_region 6679 6680 0.999 + . logic_name=eponine scaffold_291 . biological_region 6699 6702 0.999 + . logic_name=eponine scaffold_291 . biological_region 6870 6872 0.999 + . logic_name=eponine scaffold_291 . biological_region 6890 6894 0.999 - . logic_name=eponine scaffold_291 . biological_region 7269 7270 0.999 - . logic_name=eponine scaffold_291 ensembl protein_coding_gene 3980 4660 . + . ID=Physo125587;biotype=protein_coding;external_name=estExt_Genewise1.C_2910002;logic_name=jgi_physo1_1 scaffold_291 ensembl transcript 3980 4660 . + . ID=Physo125587;Parent=Physo125587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_291 . exon 3980 4660 . + . ID=Physo125587.1;Parent=Physo125587;constitutive=1;ensembl_phase=-1;rank=1 scaffold_291 . CDS 3986 4660 . + 0 ID=Physo125587;Parent=Physo125587;rank=1 scaffold_291 ensembl protein_coding_gene 1898 3181 . + . ID=Physo144862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2910001;logic_name=jgi_physo1_1 scaffold_291 ensembl transcript 1898 3181 . + . ID=Physo144862;Parent=Physo144862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_291 . CDS 1898 2118 . + 0 ID=Physo144862;Parent=Physo144862;rank=1 scaffold_291 . exon 1898 2118 . + . ID=Physo144862.1;Parent=Physo144862;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_291 . CDS 2185 2280 . + 0 ID=Physo144862;Parent=Physo144862;rank=2 scaffold_291 . exon 2185 2280 . + . ID=Physo144862.2;Parent=Physo144862;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_291 . CDS 2377 2653 . + 0 ID=Physo144862;Parent=Physo144862;rank=3 scaffold_291 . exon 2377 2653 . + . ID=Physo144862.3;Parent=Physo144862;constitutive=1;ensembl_phase=2;rank=3 scaffold_291 . CDS 2694 2708 . + 0 ID=Physo144862;Parent=Physo144862;rank=4 scaffold_291 . exon 2694 2708 . + . ID=Physo144862.4;Parent=Physo144862;constitutive=1;rank=4 scaffold_291 . CDS 2866 2922 . + 0 ID=Physo144862;Parent=Physo144862;rank=5 scaffold_291 . exon 2866 2922 . + . ID=Physo144862.5;Parent=Physo144862;constitutive=1;rank=5 scaffold_291 . CDS 2987 3181 . + 0 ID=Physo144862;Parent=Physo144862;rank=6 scaffold_291 . exon 2987 3181 . + . ID=Physo144862.6;Parent=Physo144862;constitutive=1;rank=6 scaffold_291 ensembl protein_coding_gene 4691 6803 . - . ID=Physo144863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2910002;logic_name=jgi_physo1_1 scaffold_291 ensembl transcript 4691 6803 . - . ID=Physo144863;Parent=Physo144863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_291 . CDS 4691 5035 . - 0 ID=Physo144863;Parent=Physo144863;rank=3 scaffold_291 . exon 4691 5035 . - . ID=Physo144863.3;Parent=Physo144863;constitutive=1;rank=3 scaffold_291 . CDS 5374 6249 . - 0 ID=Physo144863;Parent=Physo144863;rank=2 scaffold_291 . exon 5374 6249 . - . ID=Physo144863.2;Parent=Physo144863;constitutive=1;rank=2 scaffold_291 . CDS 6597 6803 . - 0 ID=Physo144863;Parent=Physo144863;rank=1 scaffold_291 . exon 6597 6803 . - . ID=Physo144863.1;Parent=Physo144863;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_290 1 17557 scaffold_290 . biological_region 1590 1591 0.999 + . logic_name=eponine scaffold_290 . repeat_region 1770 1781 . ? . description=dust scaffold_290 . biological_region 2394 2398 0.999 + . logic_name=eponine scaffold_290 . biological_region 2434 2440 0.999 - . logic_name=eponine scaffold_290 . biological_region 2481 2483 0.999 - . logic_name=eponine scaffold_290 . repeat_region 2729 2748 . ? . description=trf scaffold_290 . biological_region 3582 3588 0.999 - . logic_name=eponine scaffold_290 . biological_region 3620 3622 0.999 + . logic_name=eponine scaffold_290 . biological_region 3713 3715 0.999 - . logic_name=eponine scaffold_290 . biological_region 3743 3747 0.999 - . logic_name=eponine scaffold_290 . biological_region 3848 3848 0.999 + . logic_name=eponine scaffold_290 . biological_region 4056 4060 0.999 - . logic_name=eponine scaffold_290 . biological_region 4487 4487 0.999 + . logic_name=eponine scaffold_290 . biological_region 4541 4542 0.999 - . logic_name=eponine scaffold_290 . biological_region 4641 4644 0.999 - . logic_name=eponine scaffold_290 . biological_region 4843 4846 0.999 + . logic_name=eponine scaffold_290 . biological_region 4870 4874 0.999 + . logic_name=eponine scaffold_290 . biological_region 4897 4901 0.999 - . logic_name=eponine scaffold_290 . biological_region 4979 4983 0.999 - . logic_name=eponine scaffold_290 . biological_region 5508 5509 0.999 + . logic_name=eponine scaffold_290 . biological_region 7171 7175 0.999 + . logic_name=eponine scaffold_290 . biological_region 7562 7563 0.999 + . logic_name=eponine scaffold_290 . biological_region 7580 7581 0.999 + . logic_name=eponine scaffold_290 . biological_region 7747 7748 0.999 + . logic_name=eponine scaffold_290 . biological_region 7877 7878 0.999 - . logic_name=eponine scaffold_290 . biological_region 7931 7933 0.999 + . logic_name=eponine scaffold_290 . biological_region 8012 8022 0.999 + . logic_name=eponine scaffold_290 ensembl protein_coding_gene 7530 7986 . - . ID=Physo125583;biotype=protein_coding;external_name=estExt_Genewise1.C_2900001;logic_name=jgi_physo1_1 scaffold_290 ensembl transcript 7530 7986 . - . ID=Physo125583;Parent=Physo125583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_290 . exon 7530 7986 . - . ID=Physo125583.1;Parent=Physo125583;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_290 . CDS 7531 7986 . - 0 ID=Physo125583;Parent=Physo125583;rank=1 scaffold_290 ensembl protein_coding_gene 8362 9711 . - . ID=Physo125584;biotype=protein_coding;external_name=estExt_Genewise1.C_2900002;logic_name=jgi_physo1_1 scaffold_290 ensembl transcript 8362 9711 . - . ID=Physo125584;Parent=Physo125584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_290 . CDS 8362 9004 . - 0 ID=Physo125584;Parent=Physo125584;rank=2 scaffold_290 . exon 8362 9004 . - . ID=Physo125584.2;Parent=Physo125584;constitutive=1;ensembl_phase=2;rank=2 scaffold_290 . CDS 9074 9681 . - 0 ID=Physo125584;Parent=Physo125584;rank=1 scaffold_290 ensembl protein_coding_gene 5659 6642 . + . ID=Physo144857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2900001;logic_name=jgi_physo1_1 scaffold_290 ensembl transcript 5659 6642 . + . ID=Physo144857;Parent=Physo144857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_290 . CDS 5659 6642 . + 0 ID=Physo144857;Parent=Physo144857;rank=1 scaffold_290 . exon 5659 6642 . + . ID=Physo144857.1;Parent=Physo144857;constitutive=1;rank=1 scaffold_290 . exon 9074 9711 . - . ID=Physo125584.1;Parent=Physo125584;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_290 ensembl protein_coding_gene 9938 10363 . + . ID=Physo144860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2900004;logic_name=jgi_physo1_1 scaffold_290 ensembl transcript 9938 10363 . + . ID=Physo144860;Parent=Physo144860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_290 . CDS 9938 10363 . + 0 ID=Physo144860;Parent=Physo144860;rank=1 scaffold_290 . exon 9938 10363 . + . ID=Physo144860.1;Parent=Physo144860;constitutive=1;rank=1 scaffold_290 ensembl protein_coding_gene 13158 16696 . - . ID=Physo144861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2900005;logic_name=jgi_physo1_1 scaffold_290 ensembl transcript 13158 16696 . - . ID=Physo144861;Parent=Physo144861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_290 . CDS 13158 13719 . - 0 ID=Physo144861;Parent=Physo144861;rank=3 scaffold_290 . exon 13158 13719 . - . ID=Physo144861.3;Parent=Physo144861;constitutive=1;ensembl_phase=2;rank=3 scaffold_290 . CDS 13801 16298 . - 0 ID=Physo144861;Parent=Physo144861;rank=2 scaffold_290 . exon 13801 16298 . - . ID=Physo144861.2;Parent=Physo144861;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_290 . CDS 16382 16696 . - 0 ID=Physo144861;Parent=Physo144861;rank=1 scaffold_290 . exon 16382 16696 . - . ID=Physo144861.1;Parent=Physo144861;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_227 1 17580 scaffold_227 . repeat_region 1 347 . ? . description=dust scaffold_227 . repeat_region 1 347 . ? . description=trf scaffold_227 . repeat_region 514 558 . ? . description=dust scaffold_227 . repeat_region 606 691 . ? . description=dust scaffold_227 . repeat_region 789 796 . ? . description=dust scaffold_227 . repeat_region 1027 2010 . ? . description=dust scaffold_227 . repeat_region 2452 2459 . ? . description=dust scaffold_227 . repeat_region 2502 2593 . ? . description=trf scaffold_227 . repeat_region 2506 2580 . ? . description=trf scaffold_227 . repeat_region 3717 3728 . ? . description=dust scaffold_227 . biological_region 4035 4037 0.999 + . logic_name=eponine scaffold_227 ensembl protein_coding_gene 3791 8935 . + . ID=Physo144646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2270001;logic_name=jgi_physo1_1 scaffold_227 ensembl transcript 3791 8935 . + . ID=Physo144646;Parent=Physo144646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_227 . CDS 3791 4334 . + 0 ID=Physo144646;Parent=Physo144646;rank=1 scaffold_227 . exon 3791 4334 . + . ID=Physo144646.1;Parent=Physo144646;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_227 . CDS 4377 4714 . + 0 ID=Physo144646;Parent=Physo144646;rank=2 scaffold_227 . exon 4377 4714 . + . ID=Physo144646.2;Parent=Physo144646;constitutive=1;ensembl_phase=1;rank=2 scaffold_227 . CDS 4773 5891 . + 0 ID=Physo144646;Parent=Physo144646;rank=3 scaffold_227 . exon 4773 5891 . + . ID=Physo144646.3;Parent=Physo144646;constitutive=1;rank=3 scaffold_227 . CDS 5929 6043 . + 0 ID=Physo144646;Parent=Physo144646;rank=4 scaffold_227 . exon 5929 6043 . + . ID=Physo144646.4;Parent=Physo144646;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_227 . CDS 6271 6486 . + 0 ID=Physo144646;Parent=Physo144646;rank=5 scaffold_227 . exon 6271 6486 . + . ID=Physo144646.5;Parent=Physo144646;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_227 . CDS 6565 6750 . + 0 ID=Physo144646;Parent=Physo144646;rank=6 scaffold_227 . exon 6565 6750 . + . ID=Physo144646.6;Parent=Physo144646;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_227 . CDS 6870 6970 . + 0 ID=Physo144646;Parent=Physo144646;rank=7 scaffold_227 . exon 6870 6970 . + . ID=Physo144646.7;Parent=Physo144646;constitutive=1;ensembl_phase=1;rank=7 scaffold_227 . CDS 7004 8935 . + 0 ID=Physo144646;Parent=Physo144646;rank=8 scaffold_227 . exon 7004 8935 . + . ID=Physo144646.8;Parent=Physo144646;constitutive=1;rank=8 scaffold_227 ensembl protein_coding_gene 11398 11835 . + . ID=Physo144647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2270002;logic_name=jgi_physo1_1 scaffold_227 ensembl transcript 11398 11835 . + . ID=Physo144647;Parent=Physo144647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_227 . CDS 11398 11835 . + 0 ID=Physo144647;Parent=Physo144647;rank=1 scaffold_227 . exon 11398 11835 . + . ID=Physo144647.1;Parent=Physo144647;constitutive=1;rank=1 scaffold_227 ensembl protein_coding_gene 16094 16750 . - . ID=Physo144648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2270003;logic_name=jgi_physo1_1 scaffold_227 ensembl transcript 16094 16750 . - . ID=Physo144648;Parent=Physo144648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_227 . CDS 16094 16279 . - 0 ID=Physo144648;Parent=Physo144648;rank=3 scaffold_227 . exon 16094 16279 . - . ID=Physo144648.3;Parent=Physo144648;constitutive=1;rank=3 scaffold_227 . CDS 16338 16556 . - 0 ID=Physo144648;Parent=Physo144648;rank=2 scaffold_227 . exon 16338 16556 . - . ID=Physo144648.2;Parent=Physo144648;constitutive=1;rank=2 scaffold_227 . CDS 16679 16750 . - 0 ID=Physo144648;Parent=Physo144648;rank=1 scaffold_227 . exon 16679 16750 . - . ID=Physo144648.1;Parent=Physo144648;constitutive=1;rank=1 scaffold_227 ensembl protein_coding_gene 17154 17541 . - . ID=Physo144649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2270004;logic_name=jgi_physo1_1 scaffold_227 ensembl transcript 17154 17541 . - . ID=Physo144649;Parent=Physo144649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_227 . exon 17154 17339 . - . ID=Physo144649.2;Parent=Physo144649;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_227 . CDS 17177 17339 . - 0 ID=Physo144649;Parent=Physo144649;rank=2 scaffold_227 . CDS 17398 17405 . - 0 ID=Physo144649;Parent=Physo144649;rank=1 scaffold_227 . exon 17398 17541 . - . ID=Physo144649.1;Parent=Physo144649;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_288 1 17694 scaffold_288 . biological_region 1705 1705 0.999 - . logic_name=eponine scaffold_288 . biological_region 1871 1872 0.999 - . logic_name=eponine scaffold_288 . biological_region 2071 2076 0.999 + . logic_name=eponine scaffold_288 . biological_region 2390 2392 0.999 + . logic_name=eponine scaffold_288 . biological_region 2416 2418 0.999 - . logic_name=eponine scaffold_288 . biological_region 2626 2626 0.999 + . logic_name=eponine scaffold_288 . repeat_region 2758 2826 . + . description=GypsyPi-1c_I-int scaffold_288 . repeat_region 3082 3327 . ? . description=trf scaffold_288 . repeat_region 3082 3327 . ? . description=trf scaffold_288 . repeat_region 3092 3358 . ? . description=trf scaffold_288 . biological_region 3093 3096 0.999 - . logic_name=eponine scaffold_288 . biological_region 3453 3457 0.999 - . logic_name=eponine scaffold_288 . biological_region 3537 3540 0.999 + . logic_name=eponine scaffold_288 . biological_region 3865 3868 0.999 - . logic_name=eponine scaffold_288 . repeat_region 3907 5271 . + . description=GypsyPi-1c_I-int scaffold_288 . biological_region 4031 4036 0.999 - . logic_name=eponine scaffold_288 . biological_region 4099 4101 0.999 - . logic_name=eponine scaffold_288 . biological_region 5450 5454 0.999 - . logic_name=eponine scaffold_288 . repeat_region 5627 6151 . + . description=GypsyPi-1c_I-int scaffold_288 . biological_region 5773 5774 0.999 + . logic_name=eponine scaffold_288 . repeat_region 6164 7024 . ? . description=dust scaffold_288 . repeat_region 8229 8284 . ? . description=trf scaffold_288 . repeat_region 16634 17690 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_289 1 17814 scaffold_289 . repeat_region 499 563 . ? . description=trf scaffold_289 . biological_region 2613 2620 0.999 + . logic_name=eponine scaffold_289 . biological_region 2688 2689 0.999 + . logic_name=eponine scaffold_289 . biological_region 2732 2736 0.999 - . logic_name=eponine scaffold_289 . biological_region 2757 2759 0.999 + . logic_name=eponine scaffold_289 ensembl protein_coding_gene 1 2439 . + . ID=Physo144851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2890001;logic_name=jgi_physo1_1 scaffold_289 ensembl transcript 1 2439 . + . ID=Physo144851;Parent=Physo144851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_289 . exon 1 2439 . + . ID=Physo144851.1;Parent=Physo144851;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_289 . CDS 269 2212 . + 0 ID=Physo144851;Parent=Physo144851;rank=1 scaffold_289 ensembl protein_coding_gene 2424 3501 . - . ID=Physo144852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2890002;logic_name=jgi_physo1_1 scaffold_289 ensembl transcript 2424 3501 . - . ID=Physo144852;Parent=Physo144852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_289 . exon 2424 2538 . - . ID=Physo144852.4;Parent=Physo144852;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_289 . CDS 2526 2538 . - 0 ID=Physo144852;Parent=Physo144852;rank=4 scaffold_289 . CDS 2569 3098 . - 0 ID=Physo144852;Parent=Physo144852;rank=3 scaffold_289 . exon 2569 3098 . - . ID=Physo144852.3;Parent=Physo144852;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_289 . CDS 3211 3283 . - 0 ID=Physo144852;Parent=Physo144852;rank=2 scaffold_289 . exon 3211 3283 . - . ID=Physo144852.2;Parent=Physo144852;constitutive=1;ensembl_phase=2;rank=2 scaffold_289 . CDS 3326 3501 . - 0 ID=Physo144852;Parent=Physo144852;rank=1 scaffold_289 . exon 3326 3501 . - . ID=Physo144852.1;Parent=Physo144852;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_289 ensembl protein_coding_gene 5134 6573 . - . ID=Physo144853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2890003;logic_name=jgi_physo1_1 scaffold_289 ensembl transcript 5134 6573 . - . ID=Physo144853;Parent=Physo144853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_289 . CDS 5134 5635 . - 0 ID=Physo144853;Parent=Physo144853;rank=2 scaffold_289 . exon 5134 5635 . - . ID=Physo144853.2;Parent=Physo144853;constitutive=1;ensembl_phase=2;rank=2 scaffold_289 . CDS 5786 6573 . - 0 ID=Physo144853;Parent=Physo144853;rank=1 scaffold_289 . exon 5786 6573 . - . ID=Physo144853.1;Parent=Physo144853;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_289 ensembl protein_coding_gene 7655 9953 . + . ID=Physo144854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2890004;logic_name=jgi_physo1_1 scaffold_289 ensembl transcript 7655 9953 . + . ID=Physo144854;Parent=Physo144854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_289 . CDS 7655 8908 . + 0 ID=Physo144854;Parent=Physo144854;rank=1 scaffold_289 . exon 7655 8908 . + . ID=Physo144854.1;Parent=Physo144854;constitutive=1;rank=1 scaffold_289 . CDS 9315 9953 . + 0 ID=Physo144854;Parent=Physo144854;rank=2 scaffold_289 . repeat_region 13824 13852 . ? . description=dust scaffold_289 . repeat_region 14472 14483 . ? . description=dust scaffold_289 . exon 9315 9953 . + . ID=Physo144854.2;Parent=Physo144854;constitutive=1;rank=2 scaffold_289 ensembl protein_coding_gene 12548 14976 . - . ID=Physo144855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2890005;logic_name=jgi_physo1_1 scaffold_289 ensembl transcript 12548 14976 . - . ID=Physo144855;Parent=Physo144855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_289 . CDS 12548 12693 . - 0 ID=Physo144855;Parent=Physo144855;rank=9 scaffold_289 . exon 12548 12693 . - . ID=Physo144855.9;Parent=Physo144855;constitutive=1;ensembl_phase=1;rank=9 scaffold_289 . CDS 12783 12841 . - 0 ID=Physo144855;Parent=Physo144855;rank=8 scaffold_289 . exon 12783 12841 . - . ID=Physo144855.8;Parent=Physo144855;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_289 . CDS 13090 13268 . - 0 ID=Physo144855;Parent=Physo144855;rank=7 scaffold_289 . exon 13090 13268 . - . ID=Physo144855.7;Parent=Physo144855;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_289 . CDS 13306 13536 . - 0 ID=Physo144855;Parent=Physo144855;rank=6 scaffold_289 . exon 13306 13536 . - . ID=Physo144855.6;Parent=Physo144855;constitutive=1;rank=6 scaffold_289 . CDS 13564 13681 . - 0 ID=Physo144855;Parent=Physo144855;rank=5 scaffold_289 . exon 13564 13681 . - . ID=Physo144855.5;Parent=Physo144855;constitutive=1;ensembl_phase=2;rank=5 scaffold_289 . CDS 13759 13790 . - 0 ID=Physo144855;Parent=Physo144855;rank=4 scaffold_289 . exon 13759 13790 . - . ID=Physo144855.4;Parent=Physo144855;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_289 . CDS 14117 14240 . - 0 ID=Physo144855;Parent=Physo144855;rank=3 scaffold_289 . exon 14117 14240 . - . ID=Physo144855.3;Parent=Physo144855;constitutive=1;ensembl_phase=2;rank=3 scaffold_289 . CDS 14524 14660 . - 0 ID=Physo144855;Parent=Physo144855;rank=2 scaffold_289 . exon 14524 14660 . - . ID=Physo144855.2;Parent=Physo144855;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_289 . CDS 14752 14976 . - 0 ID=Physo144855;Parent=Physo144855;rank=1 scaffold_289 . exon 14752 14976 . - . ID=Physo144855.1;Parent=Physo144855;constitutive=1;rank=1 scaffold_289 ensembl protein_coding_gene 16566 17739 . - . ID=Physo144856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2890006;logic_name=jgi_physo1_1 scaffold_289 ensembl transcript 16566 17739 . - . ID=Physo144856;Parent=Physo144856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_289 . CDS 16566 16827 . - 0 ID=Physo144856;Parent=Physo144856;rank=2 scaffold_289 . exon 16566 16827 . - . ID=Physo144856.2;Parent=Physo144856;constitutive=1;ensembl_phase=2;rank=2 scaffold_289 . CDS 17084 17739 . - 0 ID=Physo144856;Parent=Physo144856;rank=1 scaffold_289 . exon 17084 17739 . - . ID=Physo144856.1;Parent=Physo144856;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_287 1 18068 scaffold_287 . repeat_region 1 1063 . - . description=Polinton-1_PI scaffold_287 . repeat_region 1066 5520 . ? . description=dust scaffold_287 . repeat_region 5761 5951 . - . description=Polinton-1_PI scaffold_287 . repeat_region 5972 6266 . - . description=Polinton-1_PI scaffold_287 . repeat_region 8733 8799 . + . description=Polinton-1_PI scaffold_287 . repeat_region 8815 8999 . + . description=Polinton-1_PI scaffold_287 ensembl protein_coding_gene 5548 6152 . - . ID=Physo125578;biotype=protein_coding;external_name=estExt_Genewise1.C_2870001;logic_name=jgi_physo1_1 scaffold_287 ensembl transcript 5548 6152 . - . ID=Physo125578;Parent=Physo125578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_287 . exon 5548 6152 . - . ID=Physo125578.1;Parent=Physo125578;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_287 . CDS 5549 6136 . - 0 ID=Physo125578;Parent=Physo125578;rank=1 scaffold_287 ensembl protein_coding_gene 333 848 . - . ID=Physo125579;biotype=protein_coding;external_name=estExt_Genewise1.C_2870002;logic_name=jgi_physo1_1 scaffold_287 ensembl transcript 333 848 . - . ID=Physo125579;Parent=Physo125579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_287 . CDS 333 755 . - 0 ID=Physo125579;Parent=Physo125579;rank=1 scaffold_287 . exon 333 848 . - . ID=Physo125579.1;Parent=Physo125579;constitutive=1;ensembl_phase=-1;rank=1 scaffold_287 . biological_region 12100 12100 0.999 - . logic_name=eponine scaffold_287 . biological_region 12623 12626 0.999 - . logic_name=eponine scaffold_287 . biological_region 14372 14375 0.999 - . logic_name=eponine scaffold_287 ensembl protein_coding_gene 16545 17872 . + . ID=Physo125580;biotype=protein_coding;external_name=estExt_Genewise1.C_2870003;logic_name=jgi_physo1_1 scaffold_287 ensembl transcript 16545 17872 . + . ID=Physo125580;Parent=Physo125580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_287 . exon 16545 16925 . + . ID=Physo125580.1;Parent=Physo125580;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_287 . CDS 16841 16925 . + 0 ID=Physo125580;Parent=Physo125580;rank=1 scaffold_287 . CDS 17118 17872 . + 0 ID=Physo125580;Parent=Physo125580;rank=2 scaffold_287 . exon 17118 17872 . + . ID=Physo125580.2;Parent=Physo125580;constitutive=1;ensembl_phase=1;rank=2 scaffold_287 ensembl protein_coding_gene 9054 16210 . + . ID=Physo144850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2870002;logic_name=jgi_physo1_1 scaffold_287 ensembl transcript 9054 16210 . + . ID=Physo144850;Parent=Physo144850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_287 . CDS 9054 9268 . + 0 ID=Physo144850;Parent=Physo144850;rank=1 scaffold_287 . exon 9054 9268 . + . ID=Physo144850.1;Parent=Physo144850;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_287 . CDS 9535 9603 . + 0 ID=Physo144850;Parent=Physo144850;rank=2 scaffold_287 . exon 9535 9603 . + . ID=Physo144850.2;Parent=Physo144850;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_287 . CDS 9827 10928 . + 0 ID=Physo144850;Parent=Physo144850;rank=3 scaffold_287 . exon 9827 10928 . + . ID=Physo144850.3;Parent=Physo144850;constitutive=1;ensembl_phase=2;rank=3 scaffold_287 . CDS 11276 11333 . + 0 ID=Physo144850;Parent=Physo144850;rank=4 scaffold_287 . exon 11276 11333 . + . ID=Physo144850.4;Parent=Physo144850;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_287 . CDS 11374 14679 . + 0 ID=Physo144850;Parent=Physo144850;rank=5 scaffold_287 . exon 11374 14679 . + . ID=Physo144850.5;Parent=Physo144850;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_287 . CDS 15318 16210 . + 0 ID=Physo144850;Parent=Physo144850;rank=6 scaffold_287 . exon 15318 16210 . + . ID=Physo144850.6;Parent=Physo144850;constitutive=1;ensembl_phase=1;rank=6 ##gff-version 3 ##sequence-region scaffold_286 1 18270 scaffold_286 . repeat_region 40 318 . + . description=GypsyPi-1c_I-int scaffold_286 . biological_region 589 591 0.999 + . logic_name=eponine scaffold_286 . biological_region 663 667 0.999 - . logic_name=eponine scaffold_286 . biological_region 683 689 0.999 - . logic_name=eponine scaffold_286 . repeat_region 1232 1507 . ? . description=dust scaffold_286 . repeat_region 5059 5273 . + . description=GypsyPi-1c_I-int scaffold_286 . repeat_region 5276 6867 . ? . description=dust scaffold_286 . repeat_region 6914 7467 . + . description=GypsyPi-1c_I-int scaffold_286 . repeat_region 7771 7842 . ? . description=dust scaffold_286 . repeat_region 8710 8801 . ? . description=trf scaffold_286 . repeat_region 8723 8779 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_281 1 18566 scaffold_281 . biological_region 569 573 0.999 + . logic_name=eponine scaffold_281 . repeat_region 718 6632 . ? . description=dust scaffold_281 . repeat_region 7106 7129 . ? . description=trf scaffold_281 . biological_region 7688 7692 0.999 - . logic_name=eponine scaffold_281 . repeat_region 8694 9911 . ? . description=dust scaffold_281 ensembl protein_coding_gene 7437 7814 . + . ID=Physo144846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2810001;logic_name=jgi_physo1_1 scaffold_281 ensembl transcript 7437 7814 . + . ID=Physo144846;Parent=Physo144846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_281 . CDS 7437 7814 . + 0 ID=Physo144846;Parent=Physo144846;rank=1 scaffold_281 . exon 7437 7814 . + . ID=Physo144846.1;Parent=Physo144846;constitutive=1;rank=1 scaffold_281 ensembl protein_coding_gene 13909 14223 . + . ID=Physo125568;biotype=protein_coding;external_name=estExt_Genewise1.C_2810001;logic_name=jgi_physo1_1 scaffold_281 ensembl transcript 13909 14223 . + . ID=Physo125568;Parent=Physo125568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_281 . exon 13909 14223 . + . ID=Physo125568.1;Parent=Physo125568;constitutive=1;ensembl_phase=-1;rank=1 scaffold_281 . CDS 13960 14223 . + 0 ID=Physo125568;Parent=Physo125568;rank=1 ##gff-version 3 ##sequence-region scaffold_285 1 18620 scaffold_285 . repeat_region 195 251 . ? . description=dust scaffold_285 . repeat_region 1979 2058 . ? . description=trf scaffold_285 . biological_region 2090 2092 0.999 - . logic_name=eponine scaffold_285 . biological_region 2148 2150 0.999 + . logic_name=eponine scaffold_285 . biological_region 4424 4425 0.999 + . logic_name=eponine scaffold_285 . repeat_region 6126 6133 . ? . description=dust scaffold_285 . biological_region 7391 7391 0.999 - . logic_name=eponine scaffold_285 . biological_region 7445 7450 0.999 + . logic_name=eponine scaffold_285 . biological_region 7584 7585 0.999 + . logic_name=eponine scaffold_285 . biological_region 7927 7930 0.999 + . logic_name=eponine scaffold_285 . biological_region 8631 8634 0.999 + . logic_name=eponine scaffold_285 . repeat_region 8645 8705 . ? . description=dust scaffold_285 . repeat_region 9230 9264 . ? . description=dust scaffold_285 ensembl protein_coding_gene 6206 8038 . - . ID=Physo144847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2850001;logic_name=jgi_physo1_1 scaffold_285 ensembl transcript 6206 8038 . - . ID=Physo144847;Parent=Physo144847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_285 . CDS 6206 8038 . - 0 ID=Physo144847;Parent=Physo144847;rank=1 scaffold_285 . exon 6206 8038 . - . ID=Physo144847.1;Parent=Physo144847;constitutive=1;rank=1 scaffold_285 . repeat_region 10012 12271 . - . description=LSU-rRNA_Hca scaffold_285 ensembl protein_coding_gene 10747 10884 . + . ID=Physo125569;biotype=protein_coding;external_name=estExt_Genewise1.C_2850001;logic_name=jgi_physo1_1 scaffold_285 ensembl transcript 10747 10884 . + . ID=Physo125569;Parent=Physo125569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_285 . CDS 10747 10884 . + 0 ID=Physo125569;Parent=Physo125569;rank=1 scaffold_285 . exon 10747 10884 . + . ID=Physo125569.1;Parent=Physo125569;constitutive=1;rank=1 scaffold_285 ensembl protein_coding_gene 11233 12271 . - . ID=Physo125577;biotype=protein_coding;external_name=estExt_Genewise1.C_2850009;logic_name=jgi_physo1_1 scaffold_285 ensembl transcript 11233 12271 . - . ID=Physo125577;Parent=Physo125577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_285 . exon 11233 12271 . - . ID=Physo125577.1;Parent=Physo125577;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_285 . CDS 11588 11731 . - 0 ID=Physo125577;Parent=Physo125577;rank=1 scaffold_285 ensembl protein_coding_gene 12432 14369 . + . ID=Physo144848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2850002;logic_name=jgi_physo1_1 scaffold_285 ensembl transcript 12432 14369 . + . ID=Physo144848;Parent=Physo144848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_285 . CDS 12432 14369 . + 0 ID=Physo144848;Parent=Physo144848;rank=1 scaffold_285 . exon 12432 14369 . + . ID=Physo144848.1;Parent=Physo144848;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_284 1 18631 scaffold_284 . repeat_region 987 3845 . ? . description=dust scaffold_284 . repeat_region 5018 6186 . ? . description=dust scaffold_284 . repeat_region 6371 6394 . ? . description=trf scaffold_284 . repeat_region 6603 6658 . ? . description=dust scaffold_284 . repeat_region 6604 6657 . + . description=(CAGA)n scaffold_284 . biological_region 7728 7730 0.999 + . logic_name=eponine scaffold_284 . biological_region 9125 9130 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_282 1 18643 scaffold_282 . repeat_region 5511 5669 . ? . description=trf scaffold_282 . repeat_region 5518 5678 . ? . description=trf scaffold_282 . repeat_region 5528 5603 . ? . description=trf scaffold_282 . repeat_region 5596 5677 . ? . description=trf scaffold_282 . biological_region 5656 5661 0.999 - . logic_name=eponine scaffold_282 . biological_region 5683 5688 0.999 - . logic_name=eponine scaffold_282 . repeat_region 10162 10171 . ? . description=dust scaffold_282 . repeat_region 11994 12029 . ? . description=dust scaffold_282 . repeat_region 12234 12292 . ? . description=dust scaffold_282 . repeat_region 12419 12468 . ? . description=dust scaffold_282 . repeat_region 13389 13434 . ? . description=dust scaffold_282 . repeat_region 13640 13688 . ? . description=dust scaffold_282 . repeat_region 16224 16318 . ? . description=dust scaffold_282 . repeat_region 16384 16446 . ? . description=dust scaffold_282 . repeat_region 16448 16511 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_283 1 18742 scaffold_283 . repeat_region 65 120 . ? . description=dust scaffold_283 . repeat_region 66 109 . ? . description=trf scaffold_283 . repeat_region 75 120 . ? . description=trf scaffold_283 . repeat_region 330 353 . ? . description=trf scaffold_283 . repeat_region 999 2115 . ? . description=dust scaffold_283 . repeat_region 3570 4348 . ? . description=dust scaffold_283 . repeat_region 6206 6214 . ? . description=dust scaffold_283 . biological_region 7055 7066 0.999 + . logic_name=eponine scaffold_283 . biological_region 7099 7104 0.999 + . logic_name=eponine scaffold_283 . biological_region 7170 7172 0.999 - . logic_name=eponine scaffold_283 . biological_region 7176 7177 0.999 + . logic_name=eponine scaffold_283 . biological_region 7190 7199 0.999 - . logic_name=eponine scaffold_283 . biological_region 7206 7215 0.999 - . logic_name=eponine scaffold_283 . repeat_region 7244 7253 . ? . description=dust scaffold_283 . repeat_region 8264 8895 . ? . description=dust scaffold_283 . repeat_region 9104 9156 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_280 1 18916 scaffold_280 . repeat_region 1492 1502 . ? . description=dust scaffold_280 . repeat_region 3604 3611 . ? . description=dust scaffold_280 . repeat_region 4632 4639 . ? . description=dust scaffold_280 . repeat_region 9379 9392 . ? . description=dust scaffold_280 . repeat_region 9415 9424 . ? . description=dust scaffold_280 ensembl protein_coding_gene 6042 7189 . - . ID=Physo144843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2800001;logic_name=jgi_physo1_1 scaffold_280 ensembl transcript 6042 7189 . - . ID=Physo144843;Parent=Physo144843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_280 . CDS 6042 6122 . - 0 ID=Physo144843;Parent=Physo144843;rank=4 scaffold_280 . exon 6042 6122 . - . ID=Physo144843.4;Parent=Physo144843;constitutive=1;rank=4 scaffold_280 . CDS 6247 6475 . - 0 ID=Physo144843;Parent=Physo144843;rank=3 scaffold_280 . exon 6247 6475 . - . ID=Physo144843.3;Parent=Physo144843;constitutive=1;ensembl_phase=2;rank=3 scaffold_280 . CDS 6550 6640 . - 0 ID=Physo144843;Parent=Physo144843;rank=2 scaffold_280 . exon 6550 6640 . - . ID=Physo144843.2;Parent=Physo144843;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_280 . CDS 7033 7189 . - 0 ID=Physo144843;Parent=Physo144843;rank=1 scaffold_280 . exon 7033 7189 . - . ID=Physo144843.1;Parent=Physo144843;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_280 ensembl protein_coding_gene 8437 8757 . - . ID=Physo144844;biotype=protein_coding;description=PsAvh18a1PsAvh18a2 [Source:UniProtKB/TrEMBL%3BAcc:E0W5Q5];external_name=estExt_fgenesh1_pg.C_2800002;logic_name=jgi_physo1_1 scaffold_280 ensembl transcript 8437 8757 . - . ID=Physo144844;Parent=Physo144844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_280 . CDS 8437 8757 . - 0 ID=Physo144844;Parent=Physo144844;rank=1 scaffold_280 . exon 8437 8757 . - . ID=Physo144844.1;Parent=Physo144844;constitutive=1;rank=1 scaffold_280 . biological_region 12000 12003 0.999 + . logic_name=eponine scaffold_280 . repeat_region 12057 12117 . ? . description=trf scaffold_280 . repeat_region 12076 12164 . ? . description=trf scaffold_280 . biological_region 15618 15623 0.999 + . logic_name=eponine scaffold_280 . biological_region 15677 15678 0.999 - . logic_name=eponine scaffold_280 ensembl protein_coding_gene 13619 14565 . - . ID=Physo144845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2800003;logic_name=jgi_physo1_1 scaffold_280 ensembl transcript 13619 14565 . - . ID=Physo144845;Parent=Physo144845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_280 . CDS 13619 14206 . - 0 ID=Physo144845;Parent=Physo144845;rank=2 scaffold_280 . exon 13619 14206 . - . ID=Physo144845.2;Parent=Physo144845;constitutive=1;rank=2 scaffold_280 . CDS 14257 14565 . - 0 ID=Physo144845;Parent=Physo144845;rank=1 scaffold_280 . exon 14257 14565 . - . ID=Physo144845.1;Parent=Physo144845;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_279 1 19001 scaffold_279 . biological_region 471 474 0.999 + . logic_name=eponine scaffold_279 . biological_region 3485 3491 0.999 - . logic_name=eponine scaffold_279 . biological_region 5395 5402 0.999 - . logic_name=eponine scaffold_279 . repeat_region 6280 6414 . - . description=GypsyPi-1c_I-int scaffold_279 . repeat_region 6865 9822 . - . description=GypsyPi-1c_I-int scaffold_279 ensembl tRNA_gene 194 265 . + . ID=EPrPSOG00000000082;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_279 ensembl transcript 194 265 . + . ID=EPrPSOT00000000082;Parent=EPrPSOG00000000082;biotype=tRNA;logic_name=ncrna_eg scaffold_279 . exon 194 265 . + . ID=EPrPSOE00000000082;Parent=EPrPSOT00000000082;constitutive=1;rank=1 scaffold_279 ensembl protein_coding_gene 5137 6201 . + . ID=Physo144841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2790001;logic_name=jgi_physo1_1 scaffold_279 ensembl transcript 5137 6201 . + . ID=Physo144841;Parent=Physo144841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_279 . CDS 5137 6201 . + 0 ID=Physo144841;Parent=Physo144841;rank=1 scaffold_279 . exon 5137 6201 . + . ID=Physo144841.1;Parent=Physo144841;constitutive=1;rank=1 scaffold_279 ensembl protein_coding_gene 6318 11977 . - . ID=Physo144842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2790002;logic_name=jgi_physo1_1 scaffold_279 ensembl transcript 6318 11977 . - . ID=Physo144842;Parent=Physo144842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_279 . CDS 6318 6602 . - 0 ID=Physo144842;Parent=Physo144842;rank=5 scaffold_279 . exon 6318 6602 . - . ID=Physo144842.5;Parent=Physo144842;constitutive=1;rank=5 scaffold_279 . CDS 6670 7019 . - 0 ID=Physo144842;Parent=Physo144842;rank=4 scaffold_279 . exon 6670 7019 . - . ID=Physo144842.4;Parent=Physo144842;constitutive=1;ensembl_phase=1;rank=4 scaffold_279 . CDS 7263 8409 . - 0 ID=Physo144842;Parent=Physo144842;rank=3 scaffold_279 . exon 7263 8409 . - . ID=Physo144842.3;Parent=Physo144842;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_279 . CDS 8431 10931 . - 0 ID=Physo144842;Parent=Physo144842;rank=2 scaffold_279 . exon 8431 10931 . - . ID=Physo144842.2;Parent=Physo144842;constitutive=1;ensembl_phase=1;rank=2 scaffold_279 . CDS 11005 11977 . - 0 ID=Physo144842;Parent=Physo144842;rank=1 scaffold_279 . repeat_region 10159 10415 . ? . description=trf scaffold_279 . exon 11005 11977 . - . ID=Physo144842.1;Parent=Physo144842;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_274 1 19040 scaffold_274 . biological_region 565 571 0.999 + . logic_name=eponine scaffold_274 . biological_region 671 680 0.999 + . logic_name=eponine scaffold_274 . biological_region 700 702 0.999 + . logic_name=eponine scaffold_274 . biological_region 726 730 0.999 + . logic_name=eponine scaffold_274 . biological_region 742 746 0.999 - . logic_name=eponine scaffold_274 . biological_region 784 789 0.999 + . logic_name=eponine scaffold_274 . biological_region 804 809 0.999 - . logic_name=eponine scaffold_274 . biological_region 837 842 0.999 - . logic_name=eponine scaffold_274 . biological_region 1155 1159 0.999 + . logic_name=eponine scaffold_274 . biological_region 1260 1267 0.999 - . logic_name=eponine scaffold_274 . repeat_region 1363 6172 . ? . description=dust scaffold_274 . biological_region 6367 6371 0.999 + . logic_name=eponine scaffold_274 . repeat_region 6831 6882 . ? . description=dust scaffold_274 . repeat_region 7228 7277 . ? . description=dust scaffold_274 . biological_region 8084 8085 0.999 - . logic_name=eponine scaffold_274 . biological_region 8643 8646 0.999 + . logic_name=eponine scaffold_274 . repeat_region 8718 11341 . ? . description=dust scaffold_274 ensembl protein_coding_gene 232 1353 . + . ID=Physo144826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2740001;logic_name=jgi_physo1_1 scaffold_274 ensembl transcript 232 1353 . + . ID=Physo144826;Parent=Physo144826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_274 . CDS 232 234 . + 0 ID=Physo144826;Parent=Physo144826;rank=1 scaffold_274 . exon 232 234 . + . ID=Physo144826.1;Parent=Physo144826;constitutive=1;rank=1 scaffold_274 . CDS 585 997 . + 0 ID=Physo144826;Parent=Physo144826;rank=2 scaffold_274 . exon 585 997 . + . ID=Physo144826.2;Parent=Physo144826;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_274 . CDS 1019 1136 . + 0 ID=Physo144826;Parent=Physo144826;rank=3 scaffold_274 . exon 1019 1136 . + . ID=Physo144826.3;Parent=Physo144826;constitutive=1;ensembl_phase=2;rank=3 scaffold_274 . CDS 1171 1310 . + 0 ID=Physo144826;Parent=Physo144826;rank=4 scaffold_274 . exon 1171 1310 . + . ID=Physo144826.4;Parent=Physo144826;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_274 . CDS 1341 1353 . + 0 ID=Physo144826;Parent=Physo144826;rank=5 scaffold_274 . exon 1341 1353 . + . ID=Physo144826.5;Parent=Physo144826;constitutive=1;ensembl_phase=2;rank=5 scaffold_274 . repeat_region 13466 13657 . ? . description=trf scaffold_274 . repeat_region 14157 14193 . ? . description=trf scaffold_274 . repeat_region 17757 19040 . ? . description=trf scaffold_274 ensembl protein_coding_gene 15468 19011 . - . ID=Physo144827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2740002;logic_name=jgi_physo1_1 scaffold_274 ensembl transcript 15468 19011 . - . ID=Physo144827;Parent=Physo144827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_274 . CDS 15468 15488 . - 0 ID=Physo144827;Parent=Physo144827;rank=2 scaffold_274 . exon 15468 15488 . - . ID=Physo144827.2;Parent=Physo144827;constitutive=1;rank=2 scaffold_274 . CDS 17950 19011 . - 0 ID=Physo144827;Parent=Physo144827;rank=1 scaffold_274 . exon 17950 19011 . - . ID=Physo144827.1;Parent=Physo144827;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_278 1 19059 scaffold_278 . repeat_region 198 243 . ? . description=trf scaffold_278 . repeat_region 208 254 . ? . description=trf scaffold_278 . repeat_region 1087 5691 . ? . description=dust scaffold_278 . biological_region 5908 5908 0.999 + . logic_name=eponine scaffold_278 . biological_region 6650 6650 0.999 - . logic_name=eponine scaffold_278 . repeat_region 7953 8035 . ? . description=trf scaffold_278 . repeat_region 8540 9015 . ? . description=dust scaffold_278 . biological_region 9333 9335 0.999 - . logic_name=eponine scaffold_278 ensembl protein_coding_gene 5693 6595 . - . ID=Physo125563;biotype=protein_coding;external_name=estExt_Genewise1.C_2780001;logic_name=jgi_physo1_1 scaffold_278 ensembl transcript 5693 6595 . - . ID=Physo125563;Parent=Physo125563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_278 . CDS 5693 5977 . - 0 ID=Physo125563;Parent=Physo125563;rank=2 scaffold_278 . exon 5693 5977 . - . ID=Physo125563.2;Parent=Physo125563;constitutive=1;rank=2 scaffold_278 . CDS 6080 6502 . - 0 ID=Physo125563;Parent=Physo125563;rank=1 scaffold_278 . exon 6080 6595 . - . ID=Physo125563.1;Parent=Physo125563;constitutive=1;ensembl_phase=-1;rank=1 scaffold_278 ensembl protein_coding_gene 9177 10232 . + . ID=Physo144840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2780002;logic_name=jgi_physo1_1 scaffold_278 ensembl transcript 9177 10232 . + . ID=Physo144840;Parent=Physo144840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_278 . CDS 9177 10232 . + 0 ID=Physo144840;Parent=Physo144840;rank=1 scaffold_278 . exon 9177 10232 . + . ID=Physo144840.1;Parent=Physo144840;constitutive=1;rank=1 scaffold_278 ensembl protein_coding_gene 18933 19055 . + . ID=Physo125565;biotype=protein_coding;external_name=estExt_Genewise1.C_2780003;logic_name=jgi_physo1_1 scaffold_278 ensembl transcript 18933 19055 . + . ID=Physo125565;Parent=Physo125565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_278 . exon 18933 19055 . + . ID=Physo125565.1;Parent=Physo125565;constitutive=1;ensembl_phase=-1;rank=1 scaffold_278 . CDS 18969 19055 . + 0 ID=Physo125565;Parent=Physo125565;rank=1 ##gff-version 3 ##sequence-region scaffold_276 1 19125 scaffold_276 . biological_region 108 110 0.999 - . logic_name=eponine scaffold_276 . biological_region 238 242 0.999 - . logic_name=eponine scaffold_276 . biological_region 438 443 0.999 + . logic_name=eponine scaffold_276 . biological_region 610 612 0.999 - . logic_name=eponine scaffold_276 . biological_region 779 783 0.999 + . logic_name=eponine scaffold_276 . biological_region 850 857 0.999 - . logic_name=eponine scaffold_276 . repeat_region 1081 1209 . ? . description=trf scaffold_276 . biological_region 1191 1195 0.999 - . logic_name=eponine scaffold_276 . biological_region 1250 1254 0.999 + . logic_name=eponine scaffold_276 . biological_region 1282 1283 0.999 + . logic_name=eponine scaffold_276 . biological_region 1317 1318 0.999 + . logic_name=eponine scaffold_276 . biological_region 1436 1440 0.999 - . logic_name=eponine scaffold_276 . biological_region 1517 1521 0.999 + . logic_name=eponine scaffold_276 . biological_region 1624 1628 0.999 - . logic_name=eponine scaffold_276 . biological_region 1637 1642 0.999 + . logic_name=eponine scaffold_276 . biological_region 1662 1662 0.999 + . logic_name=eponine scaffold_276 . biological_region 1677 1681 0.999 - . logic_name=eponine scaffold_276 . biological_region 1701 1703 0.999 - . logic_name=eponine scaffold_276 . biological_region 1707 1707 0.999 - . logic_name=eponine scaffold_276 . biological_region 1759 1762 0.999 - . logic_name=eponine scaffold_276 . biological_region 1947 1951 0.999 + . logic_name=eponine scaffold_276 . biological_region 2082 2083 0.999 - . logic_name=eponine scaffold_276 . biological_region 2112 2116 0.999 - . logic_name=eponine scaffold_276 . biological_region 2164 2164 0.999 - . logic_name=eponine scaffold_276 . biological_region 2180 2184 0.999 - . logic_name=eponine scaffold_276 . biological_region 2260 2263 0.999 + . logic_name=eponine scaffold_276 . biological_region 2287 2289 0.999 - . logic_name=eponine scaffold_276 . biological_region 2323 2328 0.999 + . logic_name=eponine scaffold_276 . biological_region 2344 2344 0.999 + . logic_name=eponine scaffold_276 . biological_region 2370 2373 0.999 - . logic_name=eponine scaffold_276 . biological_region 2384 2385 0.999 + . logic_name=eponine scaffold_276 . repeat_region 2386 2451 . ? . description=trf scaffold_276 . biological_region 2389 2395 0.999 + . logic_name=eponine scaffold_276 . repeat_region 2409 2466 . ? . description=trf scaffold_276 . repeat_region 2409 2482 . ? . description=trf scaffold_276 . biological_region 2440 2444 0.999 - . logic_name=eponine scaffold_276 . biological_region 2482 2485 0.999 - . logic_name=eponine scaffold_276 . repeat_region 2547 3224 . ? . description=dust scaffold_276 . biological_region 3274 3277 0.999 - . logic_name=eponine scaffold_276 . repeat_region 3647 3657 . ? . description=dust scaffold_276 . biological_region 3803 3803 0.999 + . logic_name=eponine scaffold_276 . biological_region 3807 3809 0.999 - . logic_name=eponine scaffold_276 . biological_region 3978 3980 0.999 + . logic_name=eponine scaffold_276 . biological_region 4075 4077 0.999 - . logic_name=eponine scaffold_276 . biological_region 4207 4207 0.999 + . logic_name=eponine scaffold_276 . biological_region 4222 4230 0.999 - . logic_name=eponine scaffold_276 . biological_region 4412 4413 0.999 - . logic_name=eponine scaffold_276 . biological_region 4439 4443 0.999 - . logic_name=eponine scaffold_276 . repeat_region 5467 5510 . ? . description=trf scaffold_276 . biological_region 5887 5888 0.999 - . logic_name=eponine scaffold_276 . biological_region 5940 5942 0.999 + . logic_name=eponine scaffold_276 . biological_region 5952 5954 0.999 - . logic_name=eponine scaffold_276 . biological_region 5968 5971 0.999 + . logic_name=eponine scaffold_276 . biological_region 5976 5980 0.999 - . logic_name=eponine scaffold_276 . biological_region 6012 6016 0.999 - . logic_name=eponine scaffold_276 . biological_region 6048 6050 0.999 + . logic_name=eponine scaffold_276 . biological_region 6376 6378 0.999 + . logic_name=eponine scaffold_276 . biological_region 6564 6569 0.999 - . logic_name=eponine scaffold_276 . biological_region 7181 7187 0.999 + . logic_name=eponine scaffold_276 . biological_region 7712 7716 0.999 + . logic_name=eponine scaffold_276 . biological_region 7756 7763 0.999 + . logic_name=eponine scaffold_276 . biological_region 7776 7777 0.999 + . logic_name=eponine scaffold_276 . biological_region 7803 7811 0.999 - . logic_name=eponine scaffold_276 . biological_region 7850 7855 0.999 - . logic_name=eponine scaffold_276 . biological_region 7883 7888 0.999 - . logic_name=eponine scaffold_276 . biological_region 8032 8035 0.999 - . logic_name=eponine scaffold_276 . biological_region 8316 8322 0.999 + . logic_name=eponine scaffold_276 . biological_region 8876 8881 0.999 + . logic_name=eponine scaffold_276 . biological_region 8937 8941 0.999 + . logic_name=eponine scaffold_276 . biological_region 8997 8998 0.999 - . logic_name=eponine scaffold_276 . biological_region 9392 9394 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_277 1 19265 scaffold_277 . biological_region 175 180 0.999 - . logic_name=eponine scaffold_277 . biological_region 985 990 0.999 + . logic_name=eponine scaffold_277 . repeat_region 3204 3237 . ? . description=trf scaffold_277 . biological_region 3680 3684 0.999 - . logic_name=eponine scaffold_277 . biological_region 6460 6462 0.999 + . logic_name=eponine scaffold_277 . biological_region 6498 6498 0.999 + . logic_name=eponine scaffold_277 . biological_region 6515 6517 0.999 - . logic_name=eponine scaffold_277 . biological_region 7085 7088 0.999 + . logic_name=eponine scaffold_277 . biological_region 7096 7098 0.999 - . logic_name=eponine scaffold_277 . biological_region 8760 8763 0.999 + . logic_name=eponine scaffold_277 ensembl protein_coding_gene 1 1254 . + . ID=Physo144833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2770001;logic_name=jgi_physo1_1 scaffold_277 ensembl transcript 1 1254 . + . ID=Physo144833;Parent=Physo144833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_277 . exon 1 510 . + . ID=Physo144833.1;Parent=Physo144833;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_277 . CDS 288 510 . + 0 ID=Physo144833;Parent=Physo144833;rank=1 scaffold_277 . CDS 594 669 . + 0 ID=Physo144833;Parent=Physo144833;rank=2 scaffold_277 . exon 594 669 . + . ID=Physo144833.2;Parent=Physo144833;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_277 . CDS 739 1123 . + 0 ID=Physo144833;Parent=Physo144833;rank=3 scaffold_277 . exon 739 1254 . + . ID=Physo144833.3;Parent=Physo144833;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_277 ensembl protein_coding_gene 1334 4989 . - . ID=Physo144834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2770002;logic_name=jgi_physo1_1 scaffold_277 ensembl transcript 1334 4989 . - . ID=Physo144834;Parent=Physo144834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_277 . CDS 1334 1551 . - 0 ID=Physo144834;Parent=Physo144834;rank=2 scaffold_277 . exon 1334 1551 . - . ID=Physo144834.2;Parent=Physo144834;constitutive=1;ensembl_phase=1;rank=2 scaffold_277 . CDS 1683 4989 . - 0 ID=Physo144834;Parent=Physo144834;rank=1 scaffold_277 . exon 1683 4989 . - . ID=Physo144834.1;Parent=Physo144834;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_277 ensembl protein_coding_gene 6060 8863 . - . ID=Physo144835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2770003;logic_name=jgi_physo1_1 scaffold_277 ensembl transcript 6060 8863 . - . ID=Physo144835;Parent=Physo144835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_277 . CDS 6060 6082 . - 0 ID=Physo144835;Parent=Physo144835;rank=5 scaffold_277 . exon 6060 6082 . - . ID=Physo144835.5;Parent=Physo144835;constitutive=1;ensembl_phase=1;rank=5 scaffold_277 . CDS 6141 6876 . - 0 ID=Physo144835;Parent=Physo144835;rank=4 scaffold_277 . exon 6141 6876 . - . ID=Physo144835.4;Parent=Physo144835;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_277 . CDS 6984 7173 . - 0 ID=Physo144835;Parent=Physo144835;rank=3 scaffold_277 . exon 6984 7173 . - . ID=Physo144835.3;Parent=Physo144835;constitutive=1;ensembl_phase=2;rank=3 scaffold_277 . CDS 7302 7546 . - 0 ID=Physo144835;Parent=Physo144835;rank=2 scaffold_277 . exon 7302 7546 . - . ID=Physo144835.2;Parent=Physo144835;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_277 . CDS 8099 8863 . - 0 ID=Physo144835;Parent=Physo144835;rank=1 scaffold_277 . exon 8099 8863 . - . ID=Physo144835.1;Parent=Physo144835;constitutive=1;rank=1 scaffold_277 ensembl protein_coding_gene 9020 11338 . - . ID=Physo144836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2770004;logic_name=jgi_physo1_1 scaffold_277 ensembl transcript 9020 11338 . - . ID=Physo144836;Parent=Physo144836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_277 . CDS 9020 11338 . - 0 ID=Physo144836;Parent=Physo144836;rank=1 scaffold_277 . exon 9020 11338 . - . ID=Physo144836.1;Parent=Physo144836;constitutive=1;rank=1 scaffold_277 . repeat_region 11391 11627 . ? . description=dust scaffold_277 . repeat_region 13795 14081 . ? . description=dust scaffold_277 . repeat_region 15211 16869 . ? . description=dust scaffold_277 . repeat_region 18957 18995 . ? . description=dust scaffold_277 ensembl protein_coding_gene 14112 15066 . + . ID=Physo144837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2770005;logic_name=jgi_physo1_1 scaffold_277 ensembl transcript 14112 15066 . + . ID=Physo144837;Parent=Physo144837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_277 . CDS 14112 15022 . + 0 ID=Physo144837;Parent=Physo144837;rank=1 scaffold_277 . exon 14112 15022 . + . ID=Physo144837.1;Parent=Physo144837;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_277 . CDS 15057 15066 . + 0 ID=Physo144837;Parent=Physo144837;rank=2 scaffold_277 . exon 15057 15066 . + . ID=Physo144837.2;Parent=Physo144837;constitutive=1;ensembl_phase=2;rank=2 scaffold_277 ensembl protein_coding_gene 17141 19131 . - . ID=Physo144838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2770006;logic_name=jgi_physo1_1 scaffold_277 ensembl transcript 17141 19131 . - . ID=Physo144838;Parent=Physo144838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_277 . CDS 17141 17145 . - 0 ID=Physo144838;Parent=Physo144838;rank=3 scaffold_277 . exon 17141 17145 . - . ID=Physo144838.3;Parent=Physo144838;constitutive=1;ensembl_phase=1;rank=3 scaffold_277 . CDS 17259 18771 . - 0 ID=Physo144838;Parent=Physo144838;rank=2 scaffold_277 . exon 17259 18771 . - . ID=Physo144838.2;Parent=Physo144838;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_277 . CDS 18862 19131 . - 0 ID=Physo144838;Parent=Physo144838;rank=1 scaffold_277 . exon 18862 19131 . - . ID=Physo144838.1;Parent=Physo144838;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_272 1 19401 scaffold_272 . repeat_region 1117 6012 . ? . description=dust scaffold_272 . repeat_region 6967 6974 . ? . description=dust scaffold_272 . repeat_region 8740 8907 . ? . description=trf scaffold_272 . biological_region 8801 8803 0.999 + . logic_name=eponine scaffold_272 . biological_region 8855 8860 0.999 - . logic_name=eponine scaffold_272 . biological_region 8856 8861 0.999 + . logic_name=eponine scaffold_272 . repeat_region 11695 14128 . - . description=GypsyPi-1c_I-int scaffold_272 ensembl protein_coding_gene 12761 13228 . - . ID=Physo109682;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2720001;logic_name=jgi_physo1_1 scaffold_272 ensembl transcript 12761 13228 . - . ID=Physo109682;Parent=Physo109682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_272 . CDS 12761 13228 . - 0 ID=Physo109682;Parent=Physo109682;rank=1 scaffold_272 . exon 12761 13228 . - . ID=Physo109682.1;Parent=Physo109682;constitutive=1;rank=1 scaffold_272 ensembl protein_coding_gene 11690 12490 . - . ID=Physo144820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2720001;logic_name=jgi_physo1_1 scaffold_272 ensembl transcript 11690 12490 . - . ID=Physo144820;Parent=Physo144820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_272 . CDS 11690 12215 . - 0 ID=Physo144820;Parent=Physo144820;rank=2 scaffold_272 . exon 11690 12215 . - . ID=Physo144820.2;Parent=Physo144820;constitutive=1;ensembl_phase=2;rank=2 scaffold_272 . CDS 12301 12389 . - 0 ID=Physo144820;Parent=Physo144820;rank=1 scaffold_272 . exon 12301 12490 . - . ID=Physo144820.1;Parent=Physo144820;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_272 ensembl protein_coding_gene 13337 13921 . - . ID=Physo144822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2720003;logic_name=jgi_physo1_1 scaffold_272 ensembl transcript 13337 13921 . - . ID=Physo144822;Parent=Physo144822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_272 . CDS 13337 13921 . - 0 ID=Physo144822;Parent=Physo144822;rank=1 scaffold_272 . exon 13337 13921 . - . ID=Physo144822.1;Parent=Physo144822;constitutive=1;rank=1 scaffold_272 ensembl protein_coding_gene 14940 15641 . - . ID=Physo144823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2720004;logic_name=jgi_physo1_1 scaffold_272 ensembl transcript 14940 15641 . - . ID=Physo144823;Parent=Physo144823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_272 . CDS 14940 15641 . - 0 ID=Physo144823;Parent=Physo144823;rank=1 scaffold_272 . exon 14940 15641 . - . ID=Physo144823.1;Parent=Physo144823;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_273 1 19432 scaffold_273 . biological_region 472 477 0.999 + . logic_name=eponine scaffold_273 . biological_region 533 537 0.999 + . logic_name=eponine scaffold_273 . biological_region 986 988 0.999 + . logic_name=eponine scaffold_273 . biological_region 1343 1345 0.999 - . logic_name=eponine scaffold_273 . repeat_region 1541 1610 . ? . description=trf scaffold_273 . biological_region 1610 1612 0.999 - . logic_name=eponine scaffold_273 . repeat_region 1738 1915 . - . description=Polinton-1_PI scaffold_273 . repeat_region 1916 1965 . ? . description=dust scaffold_273 . repeat_region 2453 2558 . ? . description=trf scaffold_273 . repeat_region 2458 2579 . ? . description=trf scaffold_273 . biological_region 2875 2875 0.999 + . logic_name=eponine scaffold_273 . biological_region 2890 2892 0.999 - . logic_name=eponine scaffold_273 . biological_region 2935 2938 0.999 - . logic_name=eponine scaffold_273 . repeat_region 3341 3394 . ? . description=trf scaffold_273 . biological_region 3377 3383 0.999 - . logic_name=eponine scaffold_273 . biological_region 3413 3415 0.999 - . logic_name=eponine scaffold_273 . biological_region 3434 3440 0.999 + . logic_name=eponine scaffold_273 . biological_region 3559 3566 0.999 - . logic_name=eponine scaffold_273 . repeat_region 4615 7692 . ? . description=dust scaffold_273 ensembl protein_coding_gene 50 1308 . - . ID=Physo144824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2730001;logic_name=jgi_physo1_1 scaffold_273 ensembl transcript 50 1308 . - . ID=Physo144824;Parent=Physo144824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_273 . CDS 50 1152 . - 0 ID=Physo144824;Parent=Physo144824;rank=2 scaffold_273 . exon 50 1152 . - . ID=Physo144824.2;Parent=Physo144824;constitutive=1;ensembl_phase=1;rank=2 scaffold_273 . CDS 1224 1308 . - 0 ID=Physo144824;Parent=Physo144824;rank=1 scaffold_273 . exon 1224 1308 . - . ID=Physo144824.1;Parent=Physo144824;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_273 . repeat_region 14819 14886 . + . description=SSU-rRNA_Tps scaffold_273 ensembl protein_coding_gene 12024 16352 . - . ID=Physo144825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2730002;logic_name=jgi_physo1_1 scaffold_273 ensembl transcript 12024 16352 . - . ID=Physo144825;Parent=Physo144825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_273 . CDS 12024 12122 . - 0 ID=Physo144825;Parent=Physo144825;rank=12 scaffold_273 . exon 12024 12122 . - . ID=Physo144825.12;Parent=Physo144825;constitutive=1;rank=12 scaffold_273 . CDS 12187 12506 . - 0 ID=Physo144825;Parent=Physo144825;rank=11 scaffold_273 . exon 12187 12506 . - . ID=Physo144825.11;Parent=Physo144825;constitutive=1;ensembl_phase=1;rank=11 scaffold_273 . CDS 12532 12643 . - 0 ID=Physo144825;Parent=Physo144825;rank=10 scaffold_273 . exon 12532 12643 . - . ID=Physo144825.10;Parent=Physo144825;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_273 . CDS 12795 12976 . - 0 ID=Physo144825;Parent=Physo144825;rank=9 scaffold_273 . exon 12795 12976 . - . ID=Physo144825.9;Parent=Physo144825;constitutive=1;ensembl_phase=1;rank=9 scaffold_273 . CDS 13069 13155 . - 0 ID=Physo144825;Parent=Physo144825;rank=8 scaffold_273 . exon 13069 13155 . - . ID=Physo144825.8;Parent=Physo144825;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_273 . CDS 13231 13464 . - 0 ID=Physo144825;Parent=Physo144825;rank=7 scaffold_273 . exon 13231 13464 . - . ID=Physo144825.7;Parent=Physo144825;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_273 . CDS 13542 13636 . - 0 ID=Physo144825;Parent=Physo144825;rank=6 scaffold_273 . exon 13542 13636 . - . ID=Physo144825.6;Parent=Physo144825;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_273 . CDS 13805 13902 . - 0 ID=Physo144825;Parent=Physo144825;rank=5 scaffold_273 . exon 13805 13902 . - . ID=Physo144825.5;Parent=Physo144825;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_273 . CDS 14226 14484 . - 0 ID=Physo144825;Parent=Physo144825;rank=4 scaffold_273 . exon 14226 14484 . - . ID=Physo144825.4;Parent=Physo144825;constitutive=1;ensembl_phase=2;rank=4 scaffold_273 . CDS 14853 14878 . - 0 ID=Physo144825;Parent=Physo144825;rank=3 scaffold_273 . exon 14853 14878 . - . ID=Physo144825.3;Parent=Physo144825;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_273 . CDS 15073 16132 . - 0 ID=Physo144825;Parent=Physo144825;rank=2 scaffold_273 . exon 15073 16132 . - . ID=Physo144825.2;Parent=Physo144825;constitutive=1;ensembl_phase=2;rank=2 scaffold_273 . CDS 16153 16352 . - 0 ID=Physo144825;Parent=Physo144825;rank=1 scaffold_273 . exon 16153 16352 . - . ID=Physo144825.1;Parent=Physo144825;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_275 1 19520 scaffold_275 . repeat_region 1 2809 . - . description=Gypsy-2-I_PI-int scaffold_275 . repeat_region 2808 4565 . - . description=Gypsy-2-I_PI-int scaffold_275 . repeat_region 4575 4690 . - . description=Gypsy-1-LTR_PI scaffold_275 . biological_region 5062 5065 0.999 + . logic_name=eponine scaffold_275 . biological_region 5460 5465 0.999 + . logic_name=eponine scaffold_275 . repeat_region 5944 5963 . ? . description=trf scaffold_275 . biological_region 6105 6108 0.999 - . logic_name=eponine scaffold_275 . biological_region 6350 6355 0.999 - . logic_name=eponine scaffold_275 . biological_region 6424 6427 0.999 - . logic_name=eponine scaffold_275 . biological_region 8824 8831 0.999 + . logic_name=eponine scaffold_275 . biological_region 8854 8858 0.999 - . logic_name=eponine scaffold_275 . biological_region 8887 8895 0.999 - . logic_name=eponine scaffold_275 . repeat_region 8897 8920 . ? . description=trf scaffold_275 . repeat_region 8922 8951 . ? . description=dust scaffold_275 . biological_region 8975 8976 0.999 - . logic_name=eponine scaffold_275 . repeat_region 9253 9302 . ? . description=dust scaffold_275 . biological_region 9635 9637 0.999 + . logic_name=eponine scaffold_275 . biological_region 9662 9662 0.999 + . logic_name=eponine scaffold_275 ensembl protein_coding_gene 6726 8974 . - . ID=Physo109683;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2750001;logic_name=jgi_physo1_1 scaffold_275 ensembl transcript 6726 8974 . - . ID=Physo109683;Parent=Physo109683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_275 . CDS 6726 6954 . - 0 ID=Physo109683;Parent=Physo109683;rank=5 scaffold_275 . exon 6726 6954 . - . ID=Physo109683.5;Parent=Physo109683;constitutive=1;ensembl_phase=2;rank=5 scaffold_275 . CDS 7003 7716 . - 0 ID=Physo109683;Parent=Physo109683;rank=4 scaffold_275 . exon 7003 7716 . - . ID=Physo109683.4;Parent=Physo109683;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_275 . CDS 7782 8086 . - 0 ID=Physo109683;Parent=Physo109683;rank=3 scaffold_275 . exon 7782 8086 . - . ID=Physo109683.3;Parent=Physo109683;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_275 . CDS 8162 8881 . - 0 ID=Physo109683;Parent=Physo109683;rank=2 scaffold_275 . exon 8162 8881 . - . ID=Physo109683.2;Parent=Physo109683;constitutive=1;rank=2 scaffold_275 . CDS 8945 8974 . - 0 ID=Physo109683;Parent=Physo109683;rank=1 scaffold_275 . exon 8945 8974 . - . ID=Physo109683.1;Parent=Physo109683;constitutive=1;rank=1 scaffold_275 ensembl protein_coding_gene 88 4601 . - . ID=Physo144828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2750001;logic_name=jgi_physo1_1 scaffold_275 ensembl transcript 88 4601 . - . ID=Physo144828;Parent=Physo144828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_275 . CDS 88 587 . - 0 ID=Physo144828;Parent=Physo144828;rank=8 scaffold_275 . exon 88 587 . - . ID=Physo144828.8;Parent=Physo144828;constitutive=1;ensembl_phase=1;rank=8 scaffold_275 . CDS 660 1281 . - 0 ID=Physo144828;Parent=Physo144828;rank=7 scaffold_275 . exon 660 1281 . - . ID=Physo144828.7;Parent=Physo144828;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_275 . CDS 1323 1377 . - 0 ID=Physo144828;Parent=Physo144828;rank=6 scaffold_275 . exon 1323 1377 . - . ID=Physo144828.6;Parent=Physo144828;constitutive=1;ensembl_phase=2;rank=6 scaffold_275 . CDS 1451 2554 . - 0 ID=Physo144828;Parent=Physo144828;rank=5 scaffold_275 . exon 1451 2554 . - . ID=Physo144828.5;Parent=Physo144828;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_275 . CDS 2760 3185 . - 0 ID=Physo144828;Parent=Physo144828;rank=4 scaffold_275 . exon 2760 3185 . - . ID=Physo144828.4;Parent=Physo144828;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_275 . CDS 3390 3618 . - 0 ID=Physo144828;Parent=Physo144828;rank=3 scaffold_275 . exon 3390 3618 . - . ID=Physo144828.3;Parent=Physo144828;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_275 . CDS 3747 4542 . - 0 ID=Physo144828;Parent=Physo144828;rank=2 scaffold_275 . exon 3747 4542 . - . ID=Physo144828.2;Parent=Physo144828;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_275 . CDS 4563 4601 . - 0 ID=Physo144828;Parent=Physo144828;rank=1 scaffold_275 . exon 4563 4601 . - . ID=Physo144828.1;Parent=Physo144828;constitutive=1;rank=1 scaffold_275 ensembl protein_coding_gene 9341 14051 . - . ID=Physo144830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2750003;logic_name=jgi_physo1_1 scaffold_275 ensembl transcript 9341 14051 . - . ID=Physo144830;Parent=Physo144830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_275 . exon 9341 9900 . - . ID=Physo144830.2;Parent=Physo144830;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_275 . CDS 9342 9900 . - 0 ID=Physo144830;Parent=Physo144830;rank=2 scaffold_275 . CDS 10615 14051 . - 0 ID=Physo144830;Parent=Physo144830;rank=1 scaffold_275 . exon 10615 14051 . - . ID=Physo144830.1;Parent=Physo144830;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_275 ensembl protein_coding_gene 17456 18019 . + . ID=Physo144831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2750004;logic_name=jgi_physo1_1 scaffold_275 ensembl transcript 17456 18019 . + . ID=Physo144831;Parent=Physo144831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_275 . CDS 17456 18019 . + 0 ID=Physo144831;Parent=Physo144831;rank=1 scaffold_275 . exon 17456 18019 . + . ID=Physo144831.1;Parent=Physo144831;constitutive=1;rank=1 scaffold_275 ensembl protein_coding_gene 18917 19505 . + . ID=Physo144832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2750005;logic_name=jgi_physo1_1 scaffold_275 ensembl transcript 18917 19505 . + . ID=Physo144832;Parent=Physo144832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_275 . CDS 18917 19504 . + 0 ID=Physo144832;Parent=Physo144832;rank=1 scaffold_275 . exon 18917 19505 . + . ID=Physo144832.1;Parent=Physo144832;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_270 1 20739 scaffold_270 . biological_region 1568 1572 0.999 + . logic_name=eponine scaffold_270 . biological_region 1606 1607 0.999 + . logic_name=eponine scaffold_270 . biological_region 3068 3072 0.999 + . logic_name=eponine scaffold_270 . biological_region 3131 3133 0.999 - . logic_name=eponine scaffold_270 . biological_region 3790 3797 0.999 + . logic_name=eponine scaffold_270 . biological_region 3808 3813 0.999 + . logic_name=eponine scaffold_270 . biological_region 3839 3847 0.999 + . logic_name=eponine scaffold_270 . biological_region 3867 3870 0.999 + . logic_name=eponine scaffold_270 . repeat_region 3877 3913 . ? . description=trf scaffold_270 . biological_region 3910 3916 0.999 - . logic_name=eponine scaffold_270 . biological_region 4135 4135 0.999 + . logic_name=eponine scaffold_270 . biological_region 4439 4442 0.999 - . logic_name=eponine scaffold_270 ensembl protein_coding_gene 3853 7797 . + . ID=Physo144807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2700002;logic_name=jgi_physo1_1 scaffold_270 ensembl transcript 3853 7797 . + . ID=Physo144807;Parent=Physo144807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_270 . CDS 3853 7527 . + 0 ID=Physo144807;Parent=Physo144807;rank=1 scaffold_270 . exon 3853 7797 . + . ID=Physo144807.1;Parent=Physo144807;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_270 ensembl protein_coding_gene 42 3394 . - . ID=Physo158985;biotype=protein_coding;external_name=C_scaffold_270000001;logic_name=jgi_physo1_1 scaffold_270 ensembl transcript 42 3394 . - . ID=Physo158985;Parent=Physo158985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_270 . CDS 42 146 . - 0 ID=Physo158985;Parent=Physo158985;rank=9 scaffold_270 . exon 42 146 . - . ID=Physo158985.9;Parent=Physo158985;constitutive=1;rank=9 scaffold_270 . CDS 240 1318 . - 0 ID=Physo158985;Parent=Physo158985;rank=8 scaffold_270 . exon 240 1318 . - . ID=Physo158985.8;Parent=Physo158985;constitutive=1;ensembl_phase=1;rank=8 scaffold_270 . CDS 1550 1935 . - 0 ID=Physo158985;Parent=Physo158985;rank=7 scaffold_270 . exon 1550 1935 . - . ID=Physo158985.7;Parent=Physo158985;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_270 . CDS 2093 2254 . - 0 ID=Physo158985;Parent=Physo158985;rank=6 scaffold_270 . exon 2093 2254 . - . ID=Physo158985.6;Parent=Physo158985;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_270 . CDS 2383 2528 . - 0 ID=Physo158985;Parent=Physo158985;rank=5 scaffold_270 . exon 2383 2528 . - . ID=Physo158985.5;Parent=Physo158985;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_270 . CDS 2556 2609 . - 0 ID=Physo158985;Parent=Physo158985;rank=4 scaffold_270 . exon 2556 2609 . - . ID=Physo158985.4;Parent=Physo158985;constitutive=1;rank=4 scaffold_270 . CDS 2729 2784 . - 0 ID=Physo158985;Parent=Physo158985;rank=3 scaffold_270 . exon 2729 2784 . - . ID=Physo158985.3;Parent=Physo158985;constitutive=1;ensembl_phase=1;rank=3 scaffold_270 . CDS 2868 2937 . - 0 ID=Physo158985;Parent=Physo158985;rank=2 scaffold_270 . exon 2868 2937 . - . ID=Physo158985.2;Parent=Physo158985;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_270 . CDS 3017 3394 . - 0 ID=Physo158985;Parent=Physo158985;rank=1 scaffold_270 . exon 3017 3394 . - . ID=Physo158985.1;Parent=Physo158985;constitutive=1;rank=1 scaffold_270 . repeat_region 9105 9113 . ? . description=dust scaffold_270 . repeat_region 12409 12452 . + . description=(TGAG)n scaffold_270 . repeat_region 12415 12452 . ? . description=dust scaffold_270 . repeat_region 12645 12652 . ? . description=dust scaffold_270 ensembl protein_coding_gene 9151 9672 . - . ID=Physo109680;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2700001;logic_name=jgi_physo1_1 scaffold_270 ensembl transcript 9151 9672 . - . ID=Physo109680;Parent=Physo109680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_270 . exon 9151 9536 . - . ID=Physo109680.2;Parent=Physo109680;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_270 . CDS 9212 9536 . - 0 ID=Physo109680;Parent=Physo109680;rank=2 scaffold_270 . CDS 9665 9672 . - 0 ID=Physo109680;Parent=Physo109680;rank=1 scaffold_270 . exon 9665 9672 . - . ID=Physo109680.1;Parent=Physo109680;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_270 ensembl protein_coding_gene 8416 9043 . - . ID=Physo144808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2700003;logic_name=jgi_physo1_1 scaffold_270 ensembl transcript 8416 9043 . - . ID=Physo144808;Parent=Physo144808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_270 . exon 8416 9043 . - . ID=Physo144808.1;Parent=Physo144808;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_270 . CDS 8510 9043 . - 0 ID=Physo144808;Parent=Physo144808;rank=1 scaffold_270 ensembl protein_coding_gene 9836 12608 . - . ID=Physo144810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2700005;logic_name=jgi_physo1_1 scaffold_270 ensembl transcript 9836 12608 . - . ID=Physo144810;Parent=Physo144810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_270 . exon 9836 12327 . - . ID=Physo144810.2;Parent=Physo144810;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_270 . CDS 10005 12327 . - 0 ID=Physo144810;Parent=Physo144810;rank=2 scaffold_270 . CDS 12458 12564 . - 0 ID=Physo144810;Parent=Physo144810;rank=1 scaffold_270 . exon 12458 12608 . - . ID=Physo144810.1;Parent=Physo144810;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_270 ensembl protein_coding_gene 13125 14565 . - . ID=Physo144811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2700006;logic_name=jgi_physo1_1 scaffold_270 ensembl transcript 13125 14565 . - . ID=Physo144811;Parent=Physo144811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_270 . CDS 13125 13571 . - 0 ID=Physo144811;Parent=Physo144811;rank=2 scaffold_270 . exon 13125 13571 . - . ID=Physo144811.2;Parent=Physo144811;constitutive=1;rank=2 scaffold_270 . CDS 13642 14565 . - 0 ID=Physo144811;Parent=Physo144811;rank=1 scaffold_270 . exon 13642 14565 . - . ID=Physo144811.1;Parent=Physo144811;constitutive=1;rank=1 scaffold_270 . biological_region 18576 18577 0.999 - . logic_name=eponine scaffold_270 . biological_region 19648 19650 0.999 + . logic_name=eponine scaffold_270 . biological_region 19660 19662 0.999 + . logic_name=eponine scaffold_270 . repeat_region 20286 20334 . ? . description=trf scaffold_270 ensembl protein_coding_gene 14765 15490 . - . ID=Physo109681;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BZ2];external_name=EGL12-G;logic_name=jgi_physo1_1 scaffold_270 ensembl transcript 14765 15490 . - . ID=Physo109681;Parent=Physo109681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_270 . CDS 14765 15490 . - 0 ID=Physo109681;Parent=Physo109681;rank=1 scaffold_270 . exon 14765 15490 . - . ID=Physo109681.1;Parent=Physo109681;constitutive=1;rank=1 scaffold_270 ensembl protein_coding_gene 18568 20227 . - . ID=Physo125527;biotype=protein_coding;external_name=estExt_Genewise1.C_2700025;logic_name=jgi_physo1_1 scaffold_270 ensembl transcript 18568 20227 . - . ID=Physo125527;Parent=Physo125527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_270 . exon 18568 20227 . - . ID=Physo125527.1;Parent=Physo125527;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_270 . CDS 18646 19956 . - 0 ID=Physo125527;Parent=Physo125527;rank=1 scaffold_270 ensembl protein_coding_gene 17861 18513 . + . ID=Physo144813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2700008;logic_name=jgi_physo1_1 scaffold_270 ensembl transcript 17861 18513 . + . ID=Physo144813;Parent=Physo144813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_270 . CDS 17861 18366 . + 0 ID=Physo144813;Parent=Physo144813;rank=1 scaffold_270 . exon 17861 18366 . + . ID=Physo144813.1;Parent=Physo144813;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_270 . CDS 18411 18513 . + 0 ID=Physo144813;Parent=Physo144813;rank=2 scaffold_270 . exon 18411 18513 . + . ID=Physo144813.2;Parent=Physo144813;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_268 1 20854 scaffold_268 . biological_region 1180 1181 0.999 + . logic_name=eponine scaffold_268 . biological_region 1259 1266 0.999 - . logic_name=eponine scaffold_268 . biological_region 1268 1270 0.999 + . logic_name=eponine scaffold_268 . biological_region 1309 1316 0.999 - . logic_name=eponine scaffold_268 . biological_region 1317 1321 0.999 + . logic_name=eponine scaffold_268 . biological_region 1329 1333 0.999 - . logic_name=eponine scaffold_268 . biological_region 1342 1346 0.999 + . logic_name=eponine scaffold_268 . biological_region 1350 1354 0.999 - . logic_name=eponine scaffold_268 . biological_region 1407 1408 0.999 + . logic_name=eponine scaffold_268 . biological_region 1488 1488 0.999 + . logic_name=eponine scaffold_268 . repeat_region 6174 6181 . ? . description=dust scaffold_268 . repeat_region 6482 6506 . ? . description=trf scaffold_268 ensembl protein_coding_gene 849 2056 . + . ID=Physo109679;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2680001;logic_name=jgi_physo1_1 scaffold_268 ensembl transcript 849 2056 . + . ID=Physo109679;Parent=Physo109679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_268 . CDS 849 1994 . + 0 ID=Physo109679;Parent=Physo109679;rank=1 scaffold_268 . exon 849 2056 . + . ID=Physo109679.1;Parent=Physo109679;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_268 ensembl protein_coding_gene 2654 4429 . + . ID=Physo144804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2680002;logic_name=jgi_physo1_1 scaffold_268 ensembl transcript 2654 4429 . + . ID=Physo144804;Parent=Physo144804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_268 . CDS 2654 4429 . + 0 ID=Physo144804;Parent=Physo144804;rank=1 scaffold_268 . exon 2654 4429 . + . ID=Physo144804.1;Parent=Physo144804;constitutive=1;rank=1 scaffold_268 ensembl protein_coding_gene 7282 10232 . + . ID=Physo144805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2680003;logic_name=jgi_physo1_1 scaffold_268 ensembl transcript 7282 10232 . + . ID=Physo144805;Parent=Physo144805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_268 . CDS 7282 7364 . + 0 ID=Physo144805;Parent=Physo144805;rank=1 scaffold_268 . exon 7282 7364 . + . ID=Physo144805.1;Parent=Physo144805;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_268 . CDS 7520 7544 . + 0 ID=Physo144805;Parent=Physo144805;rank=2 scaffold_268 . exon 7520 7544 . + . ID=Physo144805.2;Parent=Physo144805;constitutive=1;ensembl_phase=2;rank=2 scaffold_268 . CDS 7728 8141 . + 0 ID=Physo144805;Parent=Physo144805;rank=3 scaffold_268 . exon 7728 8141 . + . ID=Physo144805.3;Parent=Physo144805;constitutive=1;rank=3 scaffold_268 . CDS 8272 8660 . + 0 ID=Physo144805;Parent=Physo144805;rank=4 scaffold_268 . exon 8272 8660 . + . ID=Physo144805.4;Parent=Physo144805;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_268 . CDS 8883 9631 . + 0 ID=Physo144805;Parent=Physo144805;rank=5 scaffold_268 . exon 8883 9631 . + . ID=Physo144805.5;Parent=Physo144805;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_268 . CDS 9728 10044 . + 0 ID=Physo144805;Parent=Physo144805;rank=6 scaffold_268 . exon 9728 10044 . + . ID=Physo144805.6;Parent=Physo144805;constitutive=1;ensembl_phase=1;rank=6 scaffold_268 . CDS 10137 10232 . + 0 ID=Physo144805;Parent=Physo144805;rank=7 scaffold_268 . exon 10137 10232 . + . ID=Physo144805.7;Parent=Physo144805;constitutive=1;rank=7 scaffold_268 . repeat_region 17364 18814 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_271 1 20857 scaffold_271 . repeat_region 12 72 . ? . description=trf scaffold_271 . biological_region 584 587 0.999 - . logic_name=eponine scaffold_271 . biological_region 638 643 0.999 + . logic_name=eponine scaffold_271 . biological_region 644 647 0.999 - . logic_name=eponine scaffold_271 . repeat_region 2150 2199 . ? . description=dust scaffold_271 . repeat_region 2211 2251 . ? . description=trf scaffold_271 . repeat_region 2290 2330 . ? . description=trf scaffold_271 . repeat_region 3202 3209 . ? . description=dust scaffold_271 . biological_region 4184 4185 0.999 - . logic_name=eponine scaffold_271 . repeat_region 4532 4568 . ? . description=trf scaffold_271 . repeat_region 4532 4568 . ? . description=dust scaffold_271 . repeat_region 4536 4571 . ? . description=trf scaffold_271 . repeat_region 5322 5330 . ? . description=dust scaffold_271 ensembl protein_coding_gene 3621 3988 . + . ID=Physo125532;biotype=protein_coding;external_name=estExt_Genewise1.C_2710003;logic_name=jgi_physo1_1 scaffold_271 ensembl transcript 3621 3988 . + . ID=Physo125532;Parent=Physo125532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_271 . CDS 3621 3896 . + 0 ID=Physo125532;Parent=Physo125532;rank=1 scaffold_271 . exon 3621 3988 . + . ID=Physo125532.1;Parent=Physo125532;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_271 ensembl protein_coding_gene 604 1385 . + . ID=Physo125535;biotype=protein_coding;external_name=estExt_Genewise1.C_2710006;logic_name=jgi_physo1_1 scaffold_271 ensembl transcript 604 1385 . + . ID=Physo125535;Parent=Physo125535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_271 . exon 604 1385 . + . ID=Physo125535.1;Parent=Physo125535;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_271 . CDS 613 1020 . + 0 ID=Physo125535;Parent=Physo125535;rank=1 scaffold_271 ensembl protein_coding_gene 5455 6135 . - . ID=Physo144817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2710003;logic_name=jgi_physo1_1 scaffold_271 ensembl transcript 5455 6135 . - . ID=Physo144817;Parent=Physo144817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_271 . CDS 5455 5913 . - 0 ID=Physo144817;Parent=Physo144817;rank=2 scaffold_271 . exon 5455 5913 . - . ID=Physo144817.2;Parent=Physo144817;constitutive=1;rank=2 scaffold_271 . CDS 6079 6135 . - 0 ID=Physo144817;Parent=Physo144817;rank=1 scaffold_271 . exon 6079 6135 . - . ID=Physo144817.1;Parent=Physo144817;constitutive=1;rank=1 scaffold_271 ensembl protein_coding_gene 6861 7686 . + . ID=Physo144818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2710004;logic_name=jgi_physo1_1 scaffold_271 ensembl transcript 6861 7686 . + . ID=Physo144818;Parent=Physo144818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_271 . CDS 6861 6909 . + 0 ID=Physo144818;Parent=Physo144818;rank=1 scaffold_271 . exon 6861 6909 . + . ID=Physo144818.1;Parent=Physo144818;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_271 . CDS 6954 7341 . + 0 ID=Physo144818;Parent=Physo144818;rank=2 scaffold_271 . CDS 7569 7686 . + 0 ID=Physo144818;Parent=Physo144818;rank=3 scaffold_271 . exon 6954 7341 . + . ID=Physo144818.2;Parent=Physo144818;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_271 . exon 7569 7686 . + . ID=Physo144818.3;Parent=Physo144818;constitutive=1;ensembl_phase=2;rank=3 scaffold_271 ensembl protein_coding_gene 10927 11753 . + . ID=Physo144819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2710005;logic_name=jgi_physo1_1 scaffold_271 ensembl transcript 10927 11753 . + . ID=Physo144819;Parent=Physo144819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_271 . CDS 10927 10975 . + 0 ID=Physo144819;Parent=Physo144819;rank=1 scaffold_271 . exon 10927 10975 . + . ID=Physo144819.1;Parent=Physo144819;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_271 . CDS 11020 11463 . + 0 ID=Physo144819;Parent=Physo144819;rank=2 scaffold_271 . exon 11020 11463 . + . ID=Physo144819.2;Parent=Physo144819;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_271 . CDS 11644 11753 . + 0 ID=Physo144819;Parent=Physo144819;rank=3 scaffold_271 . exon 11644 11753 . + . ID=Physo144819.3;Parent=Physo144819;constitutive=1;ensembl_phase=1;rank=3 scaffold_271 . repeat_region 14467 14515 . ? . description=trf scaffold_271 . repeat_region 14472 14515 . ? . description=trf scaffold_271 . repeat_region 14472 14520 . + . description=(ACTG)n scaffold_271 . repeat_region 14475 14520 . ? . description=trf scaffold_271 . repeat_region 14556 15115 . ? . description=dust scaffold_271 . repeat_region 15118 15283 . ? . description=trf scaffold_271 . repeat_region 15118 15287 . ? . description=trf scaffold_271 . biological_region 15619 15619 0.999 + . logic_name=eponine scaffold_271 . repeat_region 17116 17123 . ? . description=dust scaffold_271 . biological_region 18035 18036 0.999 - . logic_name=eponine scaffold_271 . repeat_region 18075 19833 . ? . description=dust scaffold_271 . biological_region 19946 19949 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_269 1 20860 scaffold_269 . repeat_region 1 416 . ? . description=dust scaffold_269 . repeat_region 1 422 . ? . description=trf scaffold_269 . repeat_region 541 6179 . ? . description=dust scaffold_269 . biological_region 6536 6542 0.999 + . logic_name=eponine scaffold_269 . repeat_region 14381 14439 . ? . description=dust scaffold_269 . biological_region 20671 20675 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_267 1 21077 scaffold_267 . repeat_region 772 5934 . ? . description=dust scaffold_267 . repeat_region 11226 11271 . ? . description=trf scaffold_267 . biological_region 20130 20130 0.999 - . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_264 1 21429 scaffold_264 . repeat_region 15 2053 . + . description=GypsyPi-1c_I-int scaffold_264 . biological_region 1029 1031 0.999 + . logic_name=eponine scaffold_264 . biological_region 1457 1460 0.999 + . logic_name=eponine scaffold_264 . repeat_region 2132 2229 . ? . description=trf scaffold_264 . biological_region 2687 2691 0.999 - . logic_name=eponine scaffold_264 . biological_region 3212 3216 0.999 - . logic_name=eponine scaffold_264 . biological_region 3769 3775 0.999 + . logic_name=eponine scaffold_264 . biological_region 3797 3798 0.999 + . logic_name=eponine scaffold_264 . biological_region 3886 3888 0.999 - . logic_name=eponine scaffold_264 . repeat_region 4719 6152 . ? . description=trf scaffold_264 ensembl protein_coding_gene 4755 6017 . - . ID=Physo125478;biotype=protein_coding;external_name=estExt_Genewise1.C_2640004;logic_name=jgi_physo1_1 scaffold_264 ensembl transcript 4755 6017 . - . ID=Physo125478;Parent=Physo125478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_264 . exon 4755 5022 . - . ID=Physo125478.6;Parent=Physo125478;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_264 . CDS 4756 5022 . - 0 ID=Physo125478;Parent=Physo125478;rank=6 scaffold_264 . CDS 5128 5203 . - 0 ID=Physo125478;Parent=Physo125478;rank=5 scaffold_264 . exon 5128 5203 . - . ID=Physo125478.5;Parent=Physo125478;constitutive=1;ensembl_phase=2;rank=5 scaffold_264 . CDS 5253 5372 . - 0 ID=Physo125478;Parent=Physo125478;rank=4 scaffold_264 . exon 5253 5372 . - . ID=Physo125478.4;Parent=Physo125478;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_264 . CDS 5422 5541 . - 0 ID=Physo125478;Parent=Physo125478;rank=3 scaffold_264 . exon 5422 5541 . - . ID=Physo125478.3;Parent=Physo125478;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_264 . CDS 5760 5879 . - 0 ID=Physo125478;Parent=Physo125478;rank=2 scaffold_264 . exon 5760 5879 . - . ID=Physo125478.2;Parent=Physo125478;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_264 . CDS 5929 5951 . - 0 ID=Physo125478;Parent=Physo125478;rank=1 scaffold_264 . exon 5929 6017 . - . ID=Physo125478.1;Parent=Physo125478;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_264 ensembl protein_coding_gene 6084 6113 . + . ID=Physo125479;biotype=protein_coding;external_name=estExt_Genewise1.C_2640005;logic_name=jgi_physo1_1 scaffold_264 ensembl transcript 6084 6113 . + . ID=Physo125479;Parent=Physo125479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_264 . CDS 6084 6113 . + 0 ID=Physo125479;Parent=Physo125479;rank=1 scaffold_264 . exon 6084 6113 . + . ID=Physo125479.1;Parent=Physo125479;constitutive=1;rank=1 scaffold_264 ensembl protein_coding_gene 15 2350 . + . ID=Physo144785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2640001;logic_name=jgi_physo1_1 scaffold_264 ensembl transcript 15 2350 . + . ID=Physo144785;Parent=Physo144785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_264 . CDS 15 371 . + 0 ID=Physo144785;Parent=Physo144785;rank=1 scaffold_264 . exon 15 371 . + . ID=Physo144785.1;Parent=Physo144785;constitutive=1;rank=1 scaffold_264 . CDS 456 692 . + 0 ID=Physo144785;Parent=Physo144785;rank=2 scaffold_264 . exon 456 692 . + . ID=Physo144785.2;Parent=Physo144785;constitutive=1;rank=2 scaffold_264 . CDS 784 1377 . + 0 ID=Physo144785;Parent=Physo144785;rank=3 scaffold_264 . exon 784 1377 . + . ID=Physo144785.3;Parent=Physo144785;constitutive=1;rank=3 scaffold_264 . CDS 1428 1463 . + 0 ID=Physo144785;Parent=Physo144785;rank=4 scaffold_264 . exon 1428 1463 . + . ID=Physo144785.4;Parent=Physo144785;constitutive=1;rank=4 scaffold_264 . CDS 1533 1949 . + 0 ID=Physo144785;Parent=Physo144785;rank=5 scaffold_264 . exon 1533 1949 . + . ID=Physo144785.5;Parent=Physo144785;constitutive=1;rank=5 scaffold_264 . CDS 1997 2350 . + 0 ID=Physo144785;Parent=Physo144785;rank=6 scaffold_264 . exon 1997 2350 . + . ID=Physo144785.6;Parent=Physo144785;constitutive=1;rank=6 scaffold_264 ensembl protein_coding_gene 2613 4133 . - . ID=Physo144786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2640002;logic_name=jgi_physo1_1 scaffold_264 ensembl transcript 2613 4133 . - . ID=Physo144786;Parent=Physo144786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_264 . CDS 2613 2831 . - 0 ID=Physo144786;Parent=Physo144786;rank=4 scaffold_264 . exon 2613 2831 . - . ID=Physo144786.4;Parent=Physo144786;constitutive=1;rank=4 scaffold_264 . CDS 2872 2928 . - 0 ID=Physo144786;Parent=Physo144786;rank=3 scaffold_264 . exon 2872 2928 . - . ID=Physo144786.3;Parent=Physo144786;constitutive=1;rank=3 scaffold_264 . CDS 3141 3343 . - 0 ID=Physo144786;Parent=Physo144786;rank=2 scaffold_264 . exon 3141 3343 . - . ID=Physo144786.2;Parent=Physo144786;constitutive=1;ensembl_phase=1;rank=2 scaffold_264 . CDS 3638 4133 . - 0 ID=Physo144786;Parent=Physo144786;rank=1 scaffold_264 . exon 3638 4133 . - . ID=Physo144786.1;Parent=Physo144786;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_264 . repeat_region 11542 11552 . ? . description=dust scaffold_264 ensembl protein_coding_gene 8161 10064 . + . ID=Physo125480;biotype=protein_coding;external_name=estExt_Genewise1.C_2640006;logic_name=jgi_physo1_1 scaffold_264 ensembl transcript 8161 10064 . + . ID=Physo125480;Parent=Physo125480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_264 . exon 8161 10064 . + . ID=Physo125480.1;Parent=Physo125480;constitutive=1;ensembl_phase=-1;rank=1 scaffold_264 . CDS 8793 10064 . + 0 ID=Physo125480;Parent=Physo125480;rank=1 scaffold_264 . biological_region 15779 15785 0.999 + . logic_name=eponine scaffold_264 . biological_region 16382 16387 0.999 - . logic_name=eponine scaffold_264 . biological_region 16438 16442 0.999 + . logic_name=eponine scaffold_264 . repeat_region 17035 17114 . ? . description=trf scaffold_264 . biological_region 17947 17948 0.999 + . logic_name=eponine scaffold_264 . biological_region 18213 18213 0.999 + . logic_name=eponine scaffold_264 . biological_region 18309 18312 0.999 - . logic_name=eponine scaffold_264 . biological_region 18460 18460 0.999 + . logic_name=eponine scaffold_264 . biological_region 18550 18555 0.999 + . logic_name=eponine scaffold_264 . biological_region 18568 18574 0.999 + . logic_name=eponine scaffold_264 . biological_region 18571 18573 0.999 - . logic_name=eponine scaffold_264 ensembl protein_coding_gene 17737 18558 . + . ID=Physo144787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2640003;logic_name=jgi_physo1_1 scaffold_264 ensembl transcript 17737 18558 . + . ID=Physo144787;Parent=Physo144787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_264 . CDS 17737 18558 . + 0 ID=Physo144787;Parent=Physo144787;rank=1 scaffold_264 . exon 17737 18558 . + . ID=Physo144787.1;Parent=Physo144787;constitutive=1;rank=1 scaffold_264 ensembl protein_coding_gene 18910 21039 . + . ID=Physo144788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2640004;logic_name=jgi_physo1_1 scaffold_264 ensembl transcript 18910 21039 . + . ID=Physo144788;Parent=Physo144788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_264 . CDS 18910 21039 . + 0 ID=Physo144788;Parent=Physo144788;rank=1 scaffold_264 . exon 18910 21039 . + . ID=Physo144788.1;Parent=Physo144788;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_266 1 21599 scaffold_266 . repeat_region 2110 2132 . ? . description=trf scaffold_266 . repeat_region 2125 2156 . ? . description=trf scaffold_266 . repeat_region 2620 2629 . ? . description=dust scaffold_266 . biological_region 5073 5074 0.999 + . logic_name=eponine scaffold_266 . biological_region 6904 6907 0.999 - . logic_name=eponine scaffold_266 ensembl protein_coding_gene 2669 4648 . - . ID=Physo109677;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2660001;logic_name=jgi_physo1_1 scaffold_266 ensembl transcript 2669 4648 . - . ID=Physo109677;Parent=Physo109677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_266 . CDS 2669 4648 . - 0 ID=Physo109677;Parent=Physo109677;rank=1 scaffold_266 . exon 2669 4648 . - . ID=Physo109677.1;Parent=Physo109677;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 7172 7792 . + . ID=Physo109678;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2660002;logic_name=jgi_physo1_1 scaffold_266 ensembl transcript 7172 7792 . + . ID=Physo109678;Parent=Physo109678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_266 . CDS 7172 7792 . + 0 ID=Physo109678;Parent=Physo109678;rank=1 scaffold_266 . exon 7172 7792 . + . ID=Physo109678.1;Parent=Physo109678;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 819 1307 . - . ID=Physo144797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2660001;logic_name=jgi_physo1_1 scaffold_266 ensembl transcript 819 1307 . - . ID=Physo144797;Parent=Physo144797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_266 . CDS 819 1307 . - 0 ID=Physo144797;Parent=Physo144797;rank=1 scaffold_266 . exon 819 1307 . - . ID=Physo144797.1;Parent=Physo144797;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 4977 7004 . + . ID=Physo144799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2660003;logic_name=jgi_physo1_1 scaffold_266 ensembl transcript 4977 7004 . + . ID=Physo144799;Parent=Physo144799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_266 . CDS 4977 7004 . + 0 ID=Physo144799;Parent=Physo144799;rank=1 scaffold_266 . exon 4977 7004 . + . ID=Physo144799.1;Parent=Physo144799;constitutive=1;rank=1 scaffold_266 ensembl protein_coding_gene 12167 14412 . - . ID=Physo144802;biotype=protein_coding;description=MAP kinase [Source:UniProtKB/TrEMBL%3BAcc:B6V9Y5];external_name=estExt_fgenesh1_pg.C_2660006;logic_name=jgi_physo1_1 scaffold_266 ensembl transcript 12167 14412 . - . ID=Physo144802;Parent=Physo144802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_266 . exon 12167 14412 . - . ID=Physo144802.1;Parent=Physo144802;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_266 . CDS 12275 14380 . - 0 ID=Physo144802;Parent=Physo144802;rank=1 scaffold_266 ensembl protein_coding_gene 7911 11981 . - . ID=Physo158983;biotype=protein_coding;external_name=C_scaffold_266000002;logic_name=jgi_physo1_1 scaffold_266 ensembl transcript 7911 11981 . - . ID=Physo158983;Parent=Physo158983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_266 . CDS 7911 8290 . - 0 ID=Physo158983;Parent=Physo158983;rank=11 scaffold_266 . exon 7911 8290 . - . ID=Physo158983.11;Parent=Physo158983;constitutive=1;ensembl_phase=1;rank=11 scaffold_266 . CDS 8312 8725 . - 0 ID=Physo158983;Parent=Physo158983;rank=10 scaffold_266 . exon 8312 8725 . - . ID=Physo158983.10;Parent=Physo158983;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_266 . CDS 9050 9217 . - 0 ID=Physo158983;Parent=Physo158983;rank=9 scaffold_266 . exon 9050 9217 . - . ID=Physo158983.9;Parent=Physo158983;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_266 . CDS 9272 9606 . - 0 ID=Physo158983;Parent=Physo158983;rank=8 scaffold_266 . exon 9272 9606 . - . ID=Physo158983.8;Parent=Physo158983;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_266 . CDS 9640 9800 . - 0 ID=Physo158983;Parent=Physo158983;rank=7 scaffold_266 . exon 9640 9800 . - . ID=Physo158983.7;Parent=Physo158983;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_266 . CDS 9876 10063 . - 0 ID=Physo158983;Parent=Physo158983;rank=6 scaffold_266 . exon 9876 10063 . - . ID=Physo158983.6;Parent=Physo158983;constitutive=1;ensembl_phase=1;rank=6 scaffold_266 . CDS 10166 10423 . - 0 ID=Physo158983;Parent=Physo158983;rank=5 scaffold_266 . exon 10166 10423 . - . ID=Physo158983.5;Parent=Physo158983;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_266 . CDS 10451 10650 . - 0 ID=Physo158983;Parent=Physo158983;rank=4 scaffold_266 . exon 10451 10650 . - . ID=Physo158983.4;Parent=Physo158983;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_266 . CDS 10738 11086 . - 0 ID=Physo158983;Parent=Physo158983;rank=3 scaffold_266 . exon 10738 11086 . - . ID=Physo158983.3;Parent=Physo158983;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_266 . CDS 11171 11284 . - 0 ID=Physo158983;Parent=Physo158983;rank=2 scaffold_266 . exon 11171 11284 . - . ID=Physo158983.2;Parent=Physo158983;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_266 . CDS 11360 11981 . - 0 ID=Physo158983;Parent=Physo158983;rank=1 scaffold_266 . exon 11360 11981 . - . ID=Physo158983.1;Parent=Physo158983;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_266 . repeat_region 15447 15455 . ? . description=dust scaffold_266 . biological_region 16655 16655 0.999 - . logic_name=eponine scaffold_266 . biological_region 19131 19132 0.999 + . logic_name=eponine scaffold_266 . repeat_region 20887 20936 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_265 1 21731 scaffold_265 . repeat_region 960 1013 . ? . description=dust scaffold_265 . repeat_region 960 1013 . ? . description=trf scaffold_265 . biological_region 1058 1068 0.999 + . logic_name=eponine scaffold_265 . repeat_region 2849 2863 . ? . description=dust scaffold_265 . repeat_region 2999 3006 . ? . description=dust scaffold_265 . repeat_region 6395 6444 . ? . description=dust scaffold_265 . repeat_region 6684 6691 . ? . description=dust scaffold_265 ensembl protein_coding_gene 3515 4705 . - . ID=Physo109675;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2650001;logic_name=jgi_physo1_1 scaffold_265 ensembl transcript 3515 4705 . - . ID=Physo109675;Parent=Physo109675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_265 . CDS 3515 4570 . - 0 ID=Physo109675;Parent=Physo109675;rank=1 scaffold_265 . exon 3515 4705 . - . ID=Physo109675.1;Parent=Physo109675;constitutive=1;ensembl_phase=-1;rank=1 scaffold_265 ensembl protein_coding_gene 1 1094 . - . ID=Physo144789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2650001;logic_name=jgi_physo1_1 scaffold_265 ensembl transcript 1 1094 . - . ID=Physo144789;Parent=Physo144789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_265 . CDS 1 777 . - 0 ID=Physo144789;Parent=Physo144789;rank=1 scaffold_265 . exon 1 1094 . - . ID=Physo144789.1;Parent=Physo144789;constitutive=1;ensembl_phase=-1;rank=1 scaffold_265 ensembl protein_coding_gene 6979 8598 . + . ID=Physo144791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2650003;logic_name=jgi_physo1_1 scaffold_265 ensembl transcript 6979 8598 . + . ID=Physo144791;Parent=Physo144791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_265 . CDS 6979 7453 . + 0 ID=Physo144791;Parent=Physo144791;rank=1 scaffold_265 . exon 6979 7453 . + . ID=Physo144791.1;Parent=Physo144791;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_265 . CDS 7535 8598 . + 0 ID=Physo144791;Parent=Physo144791;rank=2 scaffold_265 ensembl protein_coding_gene 13847 14941 . - . ID=Physo125484;biotype=protein_coding;external_name=estExt_Genewise1.C_2650003;logic_name=jgi_physo1_1 scaffold_265 ensembl transcript 13847 14941 . - . ID=Physo125484;Parent=Physo125484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_265 . CDS 13847 14896 . - 0 ID=Physo125484;Parent=Physo125484;rank=1 scaffold_265 . exon 13847 14941 . - . ID=Physo125484.1;Parent=Physo125484;constitutive=1;ensembl_phase=-1;rank=1 scaffold_265 . exon 7535 8598 . + . ID=Physo144791.2;Parent=Physo144791;constitutive=1;ensembl_phase=1;rank=2 scaffold_265 ensembl protein_coding_gene 9978 10756 . - . ID=Physo144792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2650004;logic_name=jgi_physo1_1 scaffold_265 ensembl transcript 9978 10756 . - . ID=Physo144792;Parent=Physo144792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_265 . CDS 9978 10754 . - 0 ID=Physo144792;Parent=Physo144792;rank=1 scaffold_265 . exon 9978 10756 . - . ID=Physo144792.1;Parent=Physo144792;constitutive=1;ensembl_phase=-1;rank=1 scaffold_265 ensembl protein_coding_gene 11533 12242 . + . ID=Physo144793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2650005;logic_name=jgi_physo1_1 scaffold_265 ensembl transcript 11533 12242 . + . ID=Physo144793;Parent=Physo144793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_265 . CDS 11533 12018 . + 0 ID=Physo144793;Parent=Physo144793;rank=1 scaffold_265 . exon 11533 12018 . + . ID=Physo144793.1;Parent=Physo144793;constitutive=1;rank=1 scaffold_265 . CDS 12039 12242 . + 0 ID=Physo144793;Parent=Physo144793;rank=2 scaffold_265 . exon 12039 12242 . + . ID=Physo144793.2;Parent=Physo144793;constitutive=1;rank=2 scaffold_265 . biological_region 15974 15977 0.999 - . logic_name=eponine scaffold_265 . repeat_region 17640 17648 . ? . description=dust scaffold_265 . repeat_region 19789 19838 . ? . description=dust scaffold_265 ensembl protein_coding_gene 15738 17536 . + . ID=Physo144795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2650007;logic_name=jgi_physo1_1 scaffold_265 ensembl transcript 15738 17536 . + . ID=Physo144795;Parent=Physo144795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_265 . CDS 15738 16293 . + 0 ID=Physo144795;Parent=Physo144795;rank=1 scaffold_265 . exon 15738 16293 . + . ID=Physo144795.1;Parent=Physo144795;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_265 . CDS 16352 16787 . + 0 ID=Physo144795;Parent=Physo144795;rank=2 scaffold_265 . exon 16352 16787 . + . ID=Physo144795.2;Parent=Physo144795;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_265 . CDS 16858 17536 . + 0 ID=Physo144795;Parent=Physo144795;rank=3 scaffold_265 . exon 16858 17536 . + . ID=Physo144795.3;Parent=Physo144795;constitutive=1;ensembl_phase=2;rank=3 scaffold_265 ensembl protein_coding_gene 20138 20596 . + . ID=Physo144796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2650008;logic_name=jgi_physo1_1 scaffold_265 ensembl transcript 20138 20596 . + . ID=Physo144796;Parent=Physo144796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_265 . CDS 20138 20596 . + 0 ID=Physo144796;Parent=Physo144796;rank=1 scaffold_265 . exon 20138 20596 . + . ID=Physo144796.1;Parent=Physo144796;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_262 1 21787 scaffold_262 . biological_region 479 480 0.999 - . logic_name=eponine scaffold_262 . repeat_region 1268 1359 . ? . description=dust scaffold_262 . repeat_region 2695 2776 . ? . description=trf scaffold_262 . repeat_region 3206 3247 . ? . description=trf scaffold_262 . repeat_region 3326 3376 . ? . description=trf scaffold_262 . repeat_region 3538 5246 . ? . description=dust scaffold_262 . repeat_region 5425 5471 . ? . description=trf scaffold_262 . repeat_region 7045 7114 . ? . description=trf scaffold_262 ensembl protein_coding_gene 29 2880 . + . ID=Physo144781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2620001;logic_name=jgi_physo1_1 scaffold_262 ensembl transcript 29 2880 . + . ID=Physo144781;Parent=Physo144781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_262 . CDS 29 846 . + 0 ID=Physo144781;Parent=Physo144781;rank=1 scaffold_262 . exon 29 846 . + . ID=Physo144781.1;Parent=Physo144781;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_262 . CDS 1015 1249 . + 0 ID=Physo144781;Parent=Physo144781;rank=2 scaffold_262 . exon 1015 1249 . + . ID=Physo144781.2;Parent=Physo144781;constitutive=1;ensembl_phase=2;rank=2 scaffold_262 . CDS 1419 1866 . + 0 ID=Physo144781;Parent=Physo144781;rank=3 scaffold_262 . exon 1419 1866 . + . ID=Physo144781.3;Parent=Physo144781;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_262 . CDS 2005 2190 . + 0 ID=Physo144781;Parent=Physo144781;rank=4 scaffold_262 . exon 2005 2190 . + . ID=Physo144781.4;Parent=Physo144781;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_262 . CDS 2248 2487 . + 0 ID=Physo144781;Parent=Physo144781;rank=5 scaffold_262 . exon 2248 2487 . + . ID=Physo144781.5;Parent=Physo144781;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_262 . CDS 2672 2880 . + 0 ID=Physo144781;Parent=Physo144781;rank=6 scaffold_262 . exon 2672 2880 . + . ID=Physo144781.6;Parent=Physo144781;constitutive=1;ensembl_phase=1;rank=6 scaffold_262 . repeat_region 14709 20454 . ? . description=dust scaffold_262 ensembl protein_coding_gene 20668 21564 . + . ID=Physo144782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2620002;logic_name=jgi_physo1_1 scaffold_262 ensembl transcript 20668 21564 . + . ID=Physo144782;Parent=Physo144782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_262 . CDS 20668 21564 . + 0 ID=Physo144782;Parent=Physo144782;rank=1 scaffold_262 . exon 20668 21564 . + . ID=Physo144782.1;Parent=Physo144782;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_260 1 22030 scaffold_260 . repeat_region 1557 1715 . ? . description=trf scaffold_260 . repeat_region 1564 1724 . ? . description=trf scaffold_260 . repeat_region 1574 1649 . ? . description=trf scaffold_260 . repeat_region 1642 1723 . ? . description=trf scaffold_260 . biological_region 1702 1707 0.999 - . logic_name=eponine scaffold_260 . biological_region 1729 1734 0.999 - . logic_name=eponine scaffold_260 . repeat_region 4467 4931 . ? . description=dust scaffold_260 . repeat_region 6299 6308 . ? . description=dust scaffold_260 . repeat_region 13469 15309 . - . description=GypsyPi-1c_I-int scaffold_260 . repeat_region 15311 21249 . ? . description=dust scaffold_260 . repeat_region 21567 21574 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_263 1 22224 scaffold_263 . repeat_region 154 199 . ? . description=trf scaffold_263 . biological_region 185 187 0.999 + . logic_name=eponine scaffold_263 . repeat_region 314 339 . ? . description=trf scaffold_263 . repeat_region 314 380 . ? . description=dust scaffold_263 . repeat_region 2941 2948 . ? . description=dust scaffold_263 . biological_region 3780 3780 0.999 + . logic_name=eponine scaffold_263 . repeat_region 5850 5863 . ? . description=dust scaffold_263 ensembl tRNA_gene 198 270 . - . ID=EPrPSOG00000000140;biotype=tRNA;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_263 ensembl transcript 198 270 . - . ID=EPrPSOT00000000140;Parent=EPrPSOG00000000140;biotype=tRNA;logic_name=ncrna_eg scaffold_263 . exon 198 270 . - . ID=EPrPSOE00000000140;Parent=EPrPSOT00000000140;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_263 ensembl protein_coding_gene 3260 4291 . + . ID=Physo144783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2630001;logic_name=jgi_physo1_1 scaffold_263 ensembl transcript 3260 4291 . + . ID=Physo144783;Parent=Physo144783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_263 . CDS 3260 4291 . + 0 ID=Physo144783;Parent=Physo144783;rank=1 scaffold_263 . exon 3260 4291 . + . ID=Physo144783.1;Parent=Physo144783;constitutive=1;rank=1 scaffold_263 ensembl protein_coding_gene 11129 12535 . - . ID=Physo144784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2630002;logic_name=jgi_physo1_1 scaffold_263 ensembl transcript 11129 12535 . - . ID=Physo144784;Parent=Physo144784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_263 . CDS 11129 11337 . - 0 ID=Physo144784;Parent=Physo144784;rank=2 scaffold_263 . exon 11129 11337 . - . ID=Physo144784.2;Parent=Physo144784;constitutive=1;ensembl_phase=1;rank=2 scaffold_263 . CDS 11605 12535 . - 0 ID=Physo144784;Parent=Physo144784;rank=1 scaffold_263 . exon 11605 12535 . - . ID=Physo144784.1;Parent=Physo144784;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_263 . repeat_region 15678 15974 . ? . description=dust scaffold_263 . repeat_region 15680 15978 . ? . description=trf scaffold_263 . repeat_region 15979 16064 . ? . description=dust scaffold_263 . repeat_region 17184 21328 . ? . description=dust scaffold_263 . repeat_region 21852 22222 . ? . description=dust scaffold_263 . repeat_region 21855 22224 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_261 1 22399 scaffold_261 . repeat_region 776 1312 . ? . description=dust scaffold_261 . repeat_region 2009 2019 . ? . description=dust scaffold_261 . repeat_region 2959 2980 . ? . description=dust scaffold_261 . repeat_region 3691 3722 . ? . description=trf scaffold_261 . repeat_region 4038 4045 . ? . description=dust scaffold_261 . biological_region 4955 4958 0.999 + . logic_name=eponine scaffold_261 . biological_region 5766 5769 0.999 - . logic_name=eponine scaffold_261 . biological_region 6073 6077 0.999 + . logic_name=eponine scaffold_261 . biological_region 6338 6341 0.999 - . logic_name=eponine scaffold_261 ensembl protein_coding_gene 100 654 . + . ID=Physo144778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2610001;logic_name=jgi_physo1_1 scaffold_261 ensembl transcript 100 654 . + . ID=Physo144778;Parent=Physo144778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_261 . CDS 100 654 . + 0 ID=Physo144778;Parent=Physo144778;rank=1 scaffold_261 . exon 100 654 . + . ID=Physo144778.1;Parent=Physo144778;constitutive=1;rank=1 scaffold_261 ensembl protein_coding_gene 4494 8907 . + . ID=Physo144779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2610002;logic_name=jgi_physo1_1 scaffold_261 ensembl transcript 4494 8907 . + . ID=Physo144779;Parent=Physo144779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_261 . CDS 4494 4522 . + 0 ID=Physo144779;Parent=Physo144779;rank=1 scaffold_261 . exon 4494 4522 . + . ID=Physo144779.1;Parent=Physo144779;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_261 . CDS 4626 4915 . + 0 ID=Physo144779;Parent=Physo144779;rank=2 scaffold_261 . exon 4626 4915 . + . ID=Physo144779.2;Parent=Physo144779;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_261 . CDS 4960 5303 . + 0 ID=Physo144779;Parent=Physo144779;rank=3 scaffold_261 . exon 4960 5303 . + . ID=Physo144779.3;Parent=Physo144779;constitutive=1;ensembl_phase=1;rank=3 scaffold_261 . CDS 5353 5565 . + 0 ID=Physo144779;Parent=Physo144779;rank=4 scaffold_261 . exon 5353 5565 . + . ID=Physo144779.4;Parent=Physo144779;constitutive=1;rank=4 scaffold_261 . CDS 5646 5725 . + 0 ID=Physo144779;Parent=Physo144779;rank=5 scaffold_261 . exon 5646 5725 . + . ID=Physo144779.5;Parent=Physo144779;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_261 . CDS 5846 6019 . + 0 ID=Physo144779;Parent=Physo144779;rank=6 scaffold_261 . exon 5846 6019 . + . ID=Physo144779.6;Parent=Physo144779;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_261 . CDS 6109 6174 . + 0 ID=Physo144779;Parent=Physo144779;rank=7 scaffold_261 . exon 6109 6174 . + . ID=Physo144779.7;Parent=Physo144779;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_261 . CDS 6228 6467 . + 0 ID=Physo144779;Parent=Physo144779;rank=8 scaffold_261 . exon 6228 6467 . + . ID=Physo144779.8;Parent=Physo144779;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_261 . CDS 6546 6753 . + 0 ID=Physo144779;Parent=Physo144779;rank=9 scaffold_261 . exon 6546 6753 . + . ID=Physo144779.9;Parent=Physo144779;constitutive=1;ensembl_phase=2;rank=9 scaffold_261 . CDS 6799 6834 . + 0 ID=Physo144779;Parent=Physo144779;rank=10 scaffold_261 . exon 6799 6834 . + . ID=Physo144779.10;Parent=Physo144779;constitutive=1;rank=10 scaffold_261 . CDS 6933 7088 . + 0 ID=Physo144779;Parent=Physo144779;rank=11 scaffold_261 . exon 6933 7088 . + . ID=Physo144779.11;Parent=Physo144779;constitutive=1;rank=11 scaffold_261 . CDS 7331 7606 . + 0 ID=Physo144779;Parent=Physo144779;rank=12 scaffold_261 . exon 7331 7606 . + . ID=Physo144779.12;Parent=Physo144779;constitutive=1;rank=12 scaffold_261 . CDS 7816 8907 . + 0 ID=Physo144779;Parent=Physo144779;rank=13 scaffold_261 . exon 7816 8907 . + . ID=Physo144779.13;Parent=Physo144779;constitutive=1;rank=13 scaffold_261 ensembl protein_coding_gene 12346 13495 . - . ID=Physo144780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2610003;logic_name=jgi_physo1_1 scaffold_261 ensembl transcript 12346 13495 . - . ID=Physo144780;Parent=Physo144780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_261 . CDS 12346 12402 . - 0 ID=Physo144780;Parent=Physo144780;rank=3 scaffold_261 . exon 12346 12402 . - . ID=Physo144780.3;Parent=Physo144780;constitutive=1;rank=3 scaffold_261 . CDS 12452 12464 . - 0 ID=Physo144780;Parent=Physo144780;rank=2 scaffold_261 . exon 12452 12464 . - . ID=Physo144780.2;Parent=Physo144780;constitutive=1;ensembl_phase=2;rank=2 scaffold_261 . CDS 12820 13466 . - 0 ID=Physo144780;Parent=Physo144780;rank=1 scaffold_261 . exon 12820 13495 . - . ID=Physo144780.1;Parent=Physo144780;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_261 . repeat_region 16080 16099 . ? . description=trf scaffold_261 . repeat_region 20680 20716 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_259 1 22780 scaffold_259 . repeat_region 1232 2769 . ? . description=dust scaffold_259 . repeat_region 3231 3283 . ? . description=dust scaffold_259 . repeat_region 3231 3283 . ? . description=trf scaffold_259 . repeat_region 3597 3638 . ? . description=trf scaffold_259 . repeat_region 3745 3793 . ? . description=trf scaffold_259 . repeat_region 4498 8888 . ? . description=dust scaffold_259 ensembl protein_coding_gene 4249 4416 . - . ID=Physo125462;biotype=protein_coding;external_name=estExt_Genewise1.C_2590001;logic_name=jgi_physo1_1 scaffold_259 ensembl transcript 4249 4416 . - . ID=Physo125462;Parent=Physo125462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_259 . CDS 4249 4401 . - 0 ID=Physo125462;Parent=Physo125462;rank=1 scaffold_259 . exon 4249 4416 . - . ID=Physo125462.1;Parent=Physo125462;constitutive=1;ensembl_phase=-1;rank=1 scaffold_259 ensembl protein_coding_gene 9371 12474 . - . ID=Physo144774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2590001;logic_name=jgi_physo1_1 scaffold_259 ensembl transcript 9371 12474 . - . ID=Physo144774;Parent=Physo144774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_259 . CDS 9371 10652 . - 0 ID=Physo144774;Parent=Physo144774;rank=3 scaffold_259 . exon 9371 10652 . - . ID=Physo144774.3;Parent=Physo144774;constitutive=1;ensembl_phase=2;rank=3 scaffold_259 . CDS 10832 11550 . - 0 ID=Physo144774;Parent=Physo144774;rank=2 scaffold_259 . exon 10832 11550 . - . ID=Physo144774.2;Parent=Physo144774;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_259 . CDS 11662 12474 . - 0 ID=Physo144774;Parent=Physo144774;rank=1 scaffold_259 . exon 11662 12474 . - . ID=Physo144774.1;Parent=Physo144774;constitutive=1;rank=1 scaffold_259 ensembl protein_coding_gene 13686 14813 . - . ID=Physo144775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2590002;logic_name=jgi_physo1_1 scaffold_259 ensembl transcript 13686 14813 . - . ID=Physo144775;Parent=Physo144775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_259 . CDS 13686 14813 . - 0 ID=Physo144775;Parent=Physo144775;rank=1 scaffold_259 . exon 13686 14813 . - . ID=Physo144775.1;Parent=Physo144775;constitutive=1;rank=1 scaffold_259 . biological_region 15776 15780 0.999 - . logic_name=eponine scaffold_259 . biological_region 18355 18359 0.999 + . logic_name=eponine scaffold_259 . biological_region 18474 18478 0.999 + . logic_name=eponine scaffold_259 . biological_region 18584 18592 0.999 - . logic_name=eponine scaffold_259 . repeat_region 19569 19618 . ? . description=dust scaffold_259 . repeat_region 19679 21225 . - . description=GypsyPi-1c_I-int scaffold_259 . repeat_region 21243 21854 . ? . description=dust scaffold_259 . biological_region 22132 22134 0.999 - . logic_name=eponine scaffold_259 ensembl protein_coding_gene 19755 21231 . - . ID=Physo125468;biotype=protein_coding;external_name=estExt_Genewise1.C_2590007;logic_name=jgi_physo1_1 scaffold_259 ensembl transcript 19755 21231 . - . ID=Physo125468;Parent=Physo125468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_259 . CDS 19755 20460 . - 0 ID=Physo125468;Parent=Physo125468;rank=2 scaffold_259 . exon 19755 20460 . - . ID=Physo125468.2;Parent=Physo125468;constitutive=1;ensembl_phase=2;rank=2 scaffold_259 . CDS 20510 21177 . - 0 ID=Physo125468;Parent=Physo125468;rank=1 scaffold_259 . exon 20510 21231 . - . ID=Physo125468.1;Parent=Physo125468;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_259 ensembl protein_coding_gene 15629 17424 . - . ID=Physo144776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2590003;logic_name=jgi_physo1_1 scaffold_259 ensembl transcript 15629 17424 . - . ID=Physo144776;Parent=Physo144776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_259 . CDS 15629 16108 . - 0 ID=Physo144776;Parent=Physo144776;rank=3 scaffold_259 . exon 15629 16108 . - . ID=Physo144776.3;Parent=Physo144776;constitutive=1;rank=3 scaffold_259 . CDS 16138 16604 . - 0 ID=Physo144776;Parent=Physo144776;rank=2 scaffold_259 . exon 16138 16604 . - . ID=Physo144776.2;Parent=Physo144776;constitutive=1;ensembl_phase=1;rank=2 scaffold_259 . CDS 16761 17424 . - 0 ID=Physo144776;Parent=Physo144776;rank=1 scaffold_259 . exon 16761 17424 . - . ID=Physo144776.1;Parent=Physo144776;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_259 ensembl protein_coding_gene 18229 18639 . + . ID=Physo144777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2590004;logic_name=jgi_physo1_1 scaffold_259 ensembl transcript 18229 18639 . + . ID=Physo144777;Parent=Physo144777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_259 . CDS 18229 18639 . + 0 ID=Physo144777;Parent=Physo144777;rank=1 scaffold_259 . exon 18229 18639 . + . ID=Physo144777.1;Parent=Physo144777;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_247 1 23332 scaffold_247 . repeat_region 169 246 . ? . description=trf scaffold_247 . repeat_region 296 338 . ? . description=trf scaffold_247 . biological_region 3355 3359 0.999 - . logic_name=eponine scaffold_247 . repeat_region 5119 5129 . ? . description=dust scaffold_247 . repeat_region 5209 5253 . ? . description=dust scaffold_247 . repeat_region 5210 5253 . ? . description=trf scaffold_247 . repeat_region 5467 5476 . ? . description=dust scaffold_247 . repeat_region 5513 6859 . ? . description=trf scaffold_247 . repeat_region 6897 7079 . + . description=GypsyPi-1c_LTR scaffold_247 . repeat_region 7080 7209 . + . description=GypsyPi-1c_I-int scaffold_247 . repeat_region 7181 8364 . + . description=GypsyPi-1c_I-int scaffold_247 ensembl protein_coding_gene 11 826 . - . ID=Physo144708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2470001;logic_name=jgi_physo1_1 scaffold_247 ensembl transcript 11 826 . - . ID=Physo144708;Parent=Physo144708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_247 . CDS 11 826 . - 0 ID=Physo144708;Parent=Physo144708;rank=1 scaffold_247 . exon 11 826 . - . ID=Physo144708.1;Parent=Physo144708;constitutive=1;rank=1 scaffold_247 ensembl protein_coding_gene 7167 9641 . + . ID=Physo144709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2470002;logic_name=jgi_physo1_1 scaffold_247 ensembl transcript 7167 9641 . + . ID=Physo144709;Parent=Physo144709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_247 . CDS 7167 7173 . + 0 ID=Physo144709;Parent=Physo144709;rank=1 scaffold_247 . exon 7167 7173 . + . ID=Physo144709.1;Parent=Physo144709;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_247 . CDS 7206 7624 . + 0 ID=Physo144709;Parent=Physo144709;rank=2 scaffold_247 . exon 7206 7624 . + . ID=Physo144709.2;Parent=Physo144709;constitutive=1;ensembl_phase=1;rank=2 scaffold_247 . CDS 7665 7955 . + 0 ID=Physo144709;Parent=Physo144709;rank=3 scaffold_247 . exon 7665 7955 . + . ID=Physo144709.3;Parent=Physo144709;constitutive=1;rank=3 scaffold_247 . CDS 8079 8344 . + 0 ID=Physo144709;Parent=Physo144709;rank=4 scaffold_247 . CDS 8848 9152 . + 0 ID=Physo144709;Parent=Physo144709;rank=5 scaffold_247 . CDS 9187 9641 . + 0 ID=Physo144709;Parent=Physo144709;rank=6 scaffold_247 ensembl protein_coding_gene 10127 10498 . + . ID=Physo109668;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2470001;logic_name=jgi_physo1_1 scaffold_247 ensembl transcript 10127 10498 . + . ID=Physo109668;Parent=Physo109668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_247 . CDS 10127 10498 . + 0 ID=Physo109668;Parent=Physo109668;rank=1 scaffold_247 . exon 10127 10498 . + . ID=Physo109668.1;Parent=Physo109668;constitutive=1;rank=1 scaffold_247 . exon 8079 8344 . + . ID=Physo144709.4;Parent=Physo144709;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_247 . exon 8848 9152 . + . ID=Physo144709.5;Parent=Physo144709;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_247 . exon 9187 9641 . + . ID=Physo144709.6;Parent=Physo144709;constitutive=1;ensembl_phase=1;rank=6 scaffold_247 ensembl protein_coding_gene 10943 13150 . - . ID=Physo144711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2470004;logic_name=jgi_physo1_1 scaffold_247 ensembl transcript 10943 13150 . - . ID=Physo144711;Parent=Physo144711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_247 . CDS 10943 13150 . - 0 ID=Physo144711;Parent=Physo144711;rank=1 scaffold_247 . exon 10943 13150 . - . ID=Physo144711.1;Parent=Physo144711;constitutive=1;rank=1 scaffold_247 ensembl protein_coding_gene 15329 16291 . - . ID=Physo144712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2470005;logic_name=jgi_physo1_1 scaffold_247 ensembl transcript 15329 16291 . - . ID=Physo144712;Parent=Physo144712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_247 . CDS 15329 15655 . - 0 ID=Physo144712;Parent=Physo144712;rank=3 scaffold_247 . exon 15329 15655 . - . ID=Physo144712.3;Parent=Physo144712;constitutive=1;rank=3 scaffold_247 . CDS 15699 15824 . - 0 ID=Physo144712;Parent=Physo144712;rank=2 scaffold_247 . CDS 15926 16291 . - 0 ID=Physo144712;Parent=Physo144712;rank=1 scaffold_247 . biological_region 16296 16301 0.999 - . logic_name=eponine scaffold_247 . repeat_region 16846 17175 . ? . description=trf scaffold_247 . repeat_region 16852 17175 . ? . description=trf scaffold_247 . repeat_region 16852 17175 . ? . description=trf scaffold_247 . repeat_region 17453 22446 . ? . description=dust scaffold_247 . exon 15699 15824 . - . ID=Physo144712.2;Parent=Physo144712;constitutive=1;rank=2 scaffold_247 . exon 15926 16291 . - . ID=Physo144712.1;Parent=Physo144712;constitutive=1;rank=1 scaffold_247 ensembl protein_coding_gene 22927 23303 . + . ID=Physo144713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2470006;logic_name=jgi_physo1_1 scaffold_247 ensembl transcript 22927 23303 . + . ID=Physo144713;Parent=Physo144713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_247 . exon 22927 23303 . + . ID=Physo144713.1;Parent=Physo144713;constitutive=1;ensembl_phase=-1;rank=1 scaffold_247 . CDS 22929 23303 . + 0 ID=Physo144713;Parent=Physo144713;rank=1 ##gff-version 3 ##sequence-region scaffold_258 1 24192 scaffold_258 . repeat_region 3182 3231 . ? . description=dust scaffold_258 . biological_region 3527 3529 0.999 + . logic_name=eponine scaffold_258 . biological_region 3612 3616 0.999 - . logic_name=eponine scaffold_258 . biological_region 3642 3648 0.999 - . logic_name=eponine scaffold_258 . repeat_region 5282 5289 . ? . description=dust scaffold_258 . repeat_region 5786 5835 . ? . description=dust scaffold_258 . biological_region 6722 6723 0.999 + . logic_name=eponine scaffold_258 . biological_region 6910 6912 0.999 + . logic_name=eponine scaffold_258 . biological_region 6995 6999 0.999 - . logic_name=eponine scaffold_258 . repeat_region 7063 7112 . ? . description=dust scaffold_258 ensembl protein_coding_gene 2819 5070 . + . ID=Physo144768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2580001;logic_name=jgi_physo1_1 scaffold_258 ensembl transcript 2819 5070 . + . ID=Physo144768;Parent=Physo144768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_258 . CDS 2819 2826 . + 0 ID=Physo144768;Parent=Physo144768;rank=1 scaffold_258 . exon 2819 2826 . + . ID=Physo144768.1;Parent=Physo144768;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_258 . CDS 2893 3145 . + 0 ID=Physo144768;Parent=Physo144768;rank=2 scaffold_258 . exon 2893 3145 . + . ID=Physo144768.2;Parent=Physo144768;constitutive=1;ensembl_phase=2;rank=2 scaffold_258 . CDS 3235 5070 . + 0 ID=Physo144768;Parent=Physo144768;rank=3 scaffold_258 . exon 3235 5070 . + . ID=Physo144768.3;Parent=Physo144768;constitutive=1;rank=3 scaffold_258 ensembl protein_coding_gene 6705 7216 . + . ID=Physo144769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2580002;logic_name=jgi_physo1_1 scaffold_258 ensembl transcript 6705 7216 . + . ID=Physo144769;Parent=Physo144769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_258 . exon 6705 7060 . + . ID=Physo144769.1;Parent=Physo144769;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_258 . CDS 6708 7060 . + 0 ID=Physo144769;Parent=Physo144769;rank=1 scaffold_258 . CDS 7159 7216 . + 0 ID=Physo144769;Parent=Physo144769;rank=2 scaffold_258 . exon 7159 7216 . + . ID=Physo144769.2;Parent=Physo144769;constitutive=1;ensembl_phase=2;rank=2 scaffold_258 ensembl protein_coding_gene 11381 13119 . + . ID=Physo125456;biotype=protein_coding;external_name=estExt_Genewise1.C_2580002;logic_name=jgi_physo1_1 scaffold_258 ensembl transcript 11381 13119 . + . ID=Physo125456;Parent=Physo125456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_258 . exon 11381 11581 . + . ID=Physo125456.1;Parent=Physo125456;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_258 . exon 11594 13119 . + . ID=Physo125456.2;Parent=Physo125456;constitutive=1;ensembl_phase=-1;rank=2 scaffold_258 . CDS 12265 13119 . + 0 ID=Physo125456;Parent=Physo125456;rank=1 scaffold_258 ensembl protein_coding_gene 9297 9956 . + . ID=Physo144770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2580003;logic_name=jgi_physo1_1 scaffold_258 ensembl transcript 9297 9956 . + . ID=Physo144770;Parent=Physo144770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_258 . CDS 9297 9956 . + 0 ID=Physo144770;Parent=Physo144770;rank=1 scaffold_258 . exon 9297 9956 . + . ID=Physo144770.1;Parent=Physo144770;constitutive=1;rank=1 scaffold_258 . repeat_region 16420 16470 . ? . description=trf scaffold_258 . biological_region 17363 17366 0.999 - . logic_name=eponine scaffold_258 . biological_region 18800 18803 0.999 - . logic_name=eponine scaffold_258 . biological_region 19621 19625 0.999 + . logic_name=eponine scaffold_258 . repeat_region 20206 20229 . ? . description=trf scaffold_258 . repeat_region 21435 21459 . ? . description=dust scaffold_258 . repeat_region 21435 21459 . ? . description=trf scaffold_258 . repeat_region 22762 22810 . ? . description=trf scaffold_258 . repeat_region 22917 22958 . ? . description=trf scaffold_258 . repeat_region 23257 23296 . ? . description=dust scaffold_258 ensembl protein_coding_gene 20668 20757 . + . ID=Physo125461;biotype=protein_coding;external_name=estExt_Genewise1.C_2580007;logic_name=jgi_physo1_1 scaffold_258 ensembl transcript 20668 20757 . + . ID=Physo125461;Parent=Physo125461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_258 . CDS 20668 20757 . + 0 ID=Physo125461;Parent=Physo125461;rank=1 scaffold_258 . exon 20668 20757 . + . ID=Physo125461.1;Parent=Physo125461;constitutive=1;rank=1 scaffold_258 ensembl protein_coding_gene 17247 17940 . + . ID=Physo144771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2580004;logic_name=jgi_physo1_1 scaffold_258 ensembl transcript 17247 17940 . + . ID=Physo144771;Parent=Physo144771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_258 . CDS 17247 17511 . + 0 ID=Physo144771;Parent=Physo144771;rank=1 scaffold_258 . exon 17247 17511 . + . ID=Physo144771.1;Parent=Physo144771;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_258 . CDS 17534 17844 . + 0 ID=Physo144771;Parent=Physo144771;rank=2 scaffold_258 . exon 17534 17844 . + . ID=Physo144771.2;Parent=Physo144771;constitutive=1;ensembl_phase=1;rank=2 scaffold_258 . CDS 17878 17940 . + 0 ID=Physo144771;Parent=Physo144771;rank=3 scaffold_258 . exon 17878 17940 . + . ID=Physo144771.3;Parent=Physo144771;constitutive=1;rank=3 scaffold_258 ensembl protein_coding_gene 18361 19564 . + . ID=Physo144772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2580005;logic_name=jgi_physo1_1 scaffold_258 ensembl transcript 18361 19564 . + . ID=Physo144772;Parent=Physo144772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_258 . CDS 18361 18488 . + 0 ID=Physo144772;Parent=Physo144772;rank=1 scaffold_258 . exon 18361 18488 . + . ID=Physo144772.1;Parent=Physo144772;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_258 . CDS 18640 18777 . + 0 ID=Physo144772;Parent=Physo144772;rank=2 scaffold_258 . exon 18640 18777 . + . ID=Physo144772.2;Parent=Physo144772;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_258 . CDS 19225 19564 . + 0 ID=Physo144772;Parent=Physo144772;rank=3 scaffold_258 . exon 19225 19564 . + . ID=Physo144772.3;Parent=Physo144772;constitutive=1;ensembl_phase=2;rank=3 scaffold_258 ensembl protein_coding_gene 20779 21099 . + . ID=Physo144773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2580006;logic_name=jgi_physo1_1 scaffold_258 ensembl transcript 20779 21099 . + . ID=Physo144773;Parent=Physo144773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_258 . CDS 20779 21099 . + 0 ID=Physo144773;Parent=Physo144773;rank=1 scaffold_258 . exon 20779 21099 . + . ID=Physo144773.1;Parent=Physo144773;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_255 1 24401 scaffold_255 . repeat_region 1324 1652 . ? . description=dust scaffold_255 . repeat_region 2243 2284 . ? . description=trf scaffold_255 . repeat_region 2419 3688 . ? . description=dust scaffold_255 . biological_region 3837 3840 0.999 + . logic_name=eponine scaffold_255 . biological_region 3859 3860 0.999 + . logic_name=eponine scaffold_255 . repeat_region 4251 4271 . ? . description=trf scaffold_255 . biological_region 5272 5274 0.999 - . logic_name=eponine scaffold_255 . biological_region 17695 17698 0.999 + . logic_name=eponine scaffold_255 . biological_region 17717 17718 0.999 + . logic_name=eponine scaffold_255 . repeat_region 17852 18801 . ? . description=dust scaffold_255 . repeat_region 20834 22806 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_257 1 24504 scaffold_257 . biological_region 1327 1331 0.999 - . logic_name=eponine scaffold_257 . biological_region 1456 1459 0.999 - . logic_name=eponine scaffold_257 . biological_region 2231 2231 0.999 - . logic_name=eponine scaffold_257 . biological_region 2242 2246 0.999 + . logic_name=eponine scaffold_257 . biological_region 2342 2348 0.999 - . logic_name=eponine scaffold_257 . repeat_region 2572 2614 . ? . description=trf scaffold_257 . biological_region 3037 3039 0.999 - . logic_name=eponine scaffold_257 . biological_region 3653 3660 0.999 + . logic_name=eponine scaffold_257 . biological_region 4123 4124 0.999 + . logic_name=eponine scaffold_257 . biological_region 4177 4183 0.999 - . logic_name=eponine scaffold_257 . biological_region 4220 4224 0.999 - . logic_name=eponine scaffold_257 . biological_region 4254 4257 0.999 - . logic_name=eponine scaffold_257 . biological_region 4281 4284 0.999 - . logic_name=eponine scaffold_257 . biological_region 4677 4682 0.999 + . logic_name=eponine scaffold_257 . biological_region 4889 4890 0.999 - . logic_name=eponine scaffold_257 . biological_region 5236 5241 0.999 + . logic_name=eponine scaffold_257 . repeat_region 5284 5338 . ? . description=trf scaffold_257 . biological_region 5297 5302 0.999 + . logic_name=eponine scaffold_257 . biological_region 6067 6067 0.999 + . logic_name=eponine scaffold_257 . biological_region 6306 6310 0.999 + . logic_name=eponine scaffold_257 . biological_region 6411 6411 0.999 + . logic_name=eponine scaffold_257 . repeat_region 6705 6807 . ? . description=trf scaffold_257 . repeat_region 6706 6807 . ? . description=trf scaffold_257 . biological_region 6723 6730 0.999 + . logic_name=eponine scaffold_257 . biological_region 6777 6780 0.999 - . logic_name=eponine scaffold_257 . biological_region 6811 6816 0.999 - . logic_name=eponine scaffold_257 . biological_region 6835 6839 0.999 + . logic_name=eponine scaffold_257 . biological_region 6867 6868 0.999 + . logic_name=eponine scaffold_257 . repeat_region 6918 6961 . ? . description=trf scaffold_257 . biological_region 6957 6960 0.999 + . logic_name=eponine scaffold_257 . biological_region 6958 6966 0.999 - . logic_name=eponine scaffold_257 . biological_region 6986 6989 0.999 - . logic_name=eponine scaffold_257 . repeat_region 8003 8298 . - . description=GypsyPi-1c_LTR scaffold_257 ensembl tRNA_gene 257 329 . + . ID=EPrPSOG00000000089;biotype=tRNA;description=tRNA-Asn for anticodon GUU [Source:TRNASCAN_SE%3BAcc:tRNA-Asn];external_name=tRNA-Asn;logic_name=ncrna_eg scaffold_257 ensembl transcript 257 329 . + . ID=EPrPSOT00000000089;Parent=EPrPSOG00000000089;biotype=tRNA;logic_name=ncrna_eg scaffold_257 . exon 257 329 . + . ID=EPrPSOE00000000089;Parent=EPrPSOT00000000089;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_257 ensembl protein_coding_gene 1554 2666 . - . ID=Physo144760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2570001;logic_name=jgi_physo1_1 scaffold_257 ensembl transcript 1554 2666 . - . ID=Physo144760;Parent=Physo144760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_257 . CDS 1554 2666 . - 0 ID=Physo144760;Parent=Physo144760;rank=1 scaffold_257 . exon 1554 2666 . - . ID=Physo144760.1;Parent=Physo144760;constitutive=1;rank=1 scaffold_257 ensembl protein_coding_gene 4295 6063 . - . ID=Physo144761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2570002;logic_name=jgi_physo1_1 scaffold_257 ensembl transcript 4295 6063 . - . ID=Physo144761;Parent=Physo144761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_257 . CDS 4295 5563 . - 0 ID=Physo144761;Parent=Physo144761;rank=2 scaffold_257 . exon 4295 5563 . - . ID=Physo144761.2;Parent=Physo144761;constitutive=1;rank=2 scaffold_257 . CDS 5626 6063 . - 0 ID=Physo144761;Parent=Physo144761;rank=1 scaffold_257 . exon 5626 6063 . - . ID=Physo144761.1;Parent=Physo144761;constitutive=1;rank=1 scaffold_257 ensembl protein_coding_gene 7185 7703 . + . ID=Physo144762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2570003;logic_name=jgi_physo1_1 scaffold_257 ensembl transcript 7185 7703 . + . ID=Physo144762;Parent=Physo144762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_257 . CDS 7185 7388 . + 0 ID=Physo144762;Parent=Physo144762;rank=1 scaffold_257 . exon 7185 7388 . + . ID=Physo144762.1;Parent=Physo144762;constitutive=1;rank=1 scaffold_257 . CDS 7491 7703 . + 0 ID=Physo144762;Parent=Physo144762;rank=2 scaffold_257 . exon 7491 7703 . + . ID=Physo144762.2;Parent=Physo144762;constitutive=1;rank=2 scaffold_257 . repeat_region 13457 13506 . ? . description=dust scaffold_257 . repeat_region 13508 14333 . + . description=Gypsy-2-I_PI-int scaffold_257 . repeat_region 14576 14625 . ? . description=dust scaffold_257 ensembl protein_coding_gene 9500 11116 . + . ID=Physo144763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2570004;logic_name=jgi_physo1_1 scaffold_257 ensembl transcript 9500 11116 . + . ID=Physo144763;Parent=Physo144763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_257 . CDS 9500 11116 . + 0 ID=Physo144763;Parent=Physo144763;rank=1 scaffold_257 . exon 9500 11116 . + . ID=Physo144763.1;Parent=Physo144763;constitutive=1;rank=1 scaffold_257 ensembl protein_coding_gene 12017 13456 . - . ID=Physo144764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2570005;logic_name=jgi_physo1_1 scaffold_257 ensembl transcript 12017 13456 . - . ID=Physo144764;Parent=Physo144764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_257 . CDS 12017 13165 . - 0 ID=Physo144764;Parent=Physo144764;rank=1 scaffold_257 . exon 12017 13456 . - . ID=Physo144764.1;Parent=Physo144764;constitutive=1;ensembl_phase=-1;rank=1 scaffold_257 ensembl protein_coding_gene 13609 14067 . - . ID=Physo144765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2570006;logic_name=jgi_physo1_1 scaffold_257 ensembl transcript 13609 14067 . - . ID=Physo144765;Parent=Physo144765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_257 . CDS 13609 14067 . - 0 ID=Physo144765;Parent=Physo144765;rank=1 scaffold_257 . exon 13609 14067 . - . ID=Physo144765.1;Parent=Physo144765;constitutive=1;rank=1 scaffold_257 . repeat_region 16383 16498 . - . description=Gypsy-1-LTR_PI scaffold_257 . biological_region 18071 18074 0.999 + . logic_name=eponine scaffold_257 . biological_region 18469 18474 0.999 + . logic_name=eponine scaffold_257 . repeat_region 21108 21223 . - . description=Gypsy-1-LTR_PI scaffold_257 . repeat_region 22912 22931 . ? . description=trf scaffold_257 . biological_region 23073 23076 0.999 - . logic_name=eponine scaffold_257 . biological_region 23318 23323 0.999 - . logic_name=eponine scaffold_257 . biological_region 23392 23395 0.999 - . logic_name=eponine scaffold_257 ensembl protein_coding_gene 19175 21134 . - . ID=Physo144766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2570007;logic_name=jgi_physo1_1 scaffold_257 ensembl transcript 19175 21134 . - . ID=Physo144766;Parent=Physo144766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_257 . CDS 19175 19525 . - 0 ID=Physo144766;Parent=Physo144766;rank=4 scaffold_257 . exon 19175 19525 . - . ID=Physo144766.4;Parent=Physo144766;constitutive=1;rank=4 scaffold_257 . CDS 19567 19621 . - 0 ID=Physo144766;Parent=Physo144766;rank=3 scaffold_257 . exon 19567 19621 . - . ID=Physo144766.3;Parent=Physo144766;constitutive=1;ensembl_phase=2;rank=3 scaffold_257 . CDS 20399 21075 . - 0 ID=Physo144766;Parent=Physo144766;rank=2 scaffold_257 . exon 20399 21075 . - . ID=Physo144766.2;Parent=Physo144766;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_257 . CDS 21096 21134 . - 0 ID=Physo144766;Parent=Physo144766;rank=1 scaffold_257 . exon 21096 21134 . - . ID=Physo144766.1;Parent=Physo144766;constitutive=1;rank=1 scaffold_257 ensembl protein_coding_gene 23694 24504 . - . ID=Physo144767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2570008;logic_name=jgi_physo1_1 scaffold_257 ensembl transcript 23694 24504 . - . ID=Physo144767;Parent=Physo144767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_257 . CDS 23694 23885 . - 0 ID=Physo144767;Parent=Physo144767;rank=1 scaffold_257 . exon 23694 24504 . - . ID=Physo144767.1;Parent=Physo144767;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_256 1 24681 scaffold_256 . biological_region 1287 1288 0.999 - . logic_name=eponine scaffold_256 . biological_region 1920 1922 0.999 - . logic_name=eponine scaffold_256 . repeat_region 2453 2475 . ? . description=trf scaffold_256 . repeat_region 2520 2552 . ? . description=dust scaffold_256 . biological_region 3187 3188 0.999 - . logic_name=eponine scaffold_256 . repeat_region 5490 5538 . ? . description=dust scaffold_256 . repeat_region 5490 5538 . ? . description=trf scaffold_256 . biological_region 6031 6031 0.999 - . logic_name=eponine scaffold_256 ensembl protein_coding_gene 1 1470 . - . ID=Physo125450;biotype=protein_coding;external_name=estExt_Genewise1.C_2560016;logic_name=jgi_physo1_1 scaffold_256 ensembl transcript 1 1470 . - . ID=Physo125450;Parent=Physo125450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_256 . exon 1 101 . - . ID=Physo125450.4;Parent=Physo125450;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_256 . CDS 2 101 . - 0 ID=Physo125450;Parent=Physo125450;rank=4 scaffold_256 . CDS 170 694 . - 0 ID=Physo125450;Parent=Physo125450;rank=3 scaffold_256 . exon 170 694 . - . ID=Physo125450.3;Parent=Physo125450;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_256 . CDS 763 1058 . - 0 ID=Physo125450;Parent=Physo125450;rank=2 scaffold_256 . exon 763 1058 . - . ID=Physo125450.2;Parent=Physo125450;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_256 . CDS 1125 1436 . - 0 ID=Physo125450;Parent=Physo125450;rank=1 scaffold_256 . exon 1125 1470 . - . ID=Physo125450.1;Parent=Physo125450;constitutive=1;ensembl_phase=-1;rank=1 scaffold_256 ensembl protein_coding_gene 2996 3288 . + . ID=Physo125453;biotype=protein_coding;external_name=estExt_Genewise1.C_2560019;logic_name=jgi_physo1_1 scaffold_256 ensembl transcript 2996 3288 . + . ID=Physo125453;Parent=Physo125453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_256 . exon 2996 3035 . + . ID=Physo125453.1;Parent=Physo125453;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_256 . exon 3119 3288 . + . ID=Physo125453.2;Parent=Physo125453;constitutive=1;ensembl_phase=-1;rank=2 scaffold_256 . CDS 3172 3288 . + 0 ID=Physo125453;Parent=Physo125453;rank=1 scaffold_256 ensembl protein_coding_gene 3634 5210 . + . ID=Physo144755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2560002;logic_name=jgi_physo1_1 scaffold_256 ensembl transcript 3634 5210 . + . ID=Physo144755;Parent=Physo144755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_256 . CDS 3634 5130 . + 0 ID=Physo144755;Parent=Physo144755;rank=1 scaffold_256 . exon 3634 5210 . + . ID=Physo144755.1;Parent=Physo144755;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_256 ensembl protein_coding_gene 8284 9525 . - . ID=Physo109674;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2560001;logic_name=jgi_physo1_1 scaffold_256 ensembl transcript 8284 9525 . - . ID=Physo109674;Parent=Physo109674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_256 . CDS 8284 9525 . - 0 ID=Physo109674;Parent=Physo109674;rank=1 scaffold_256 . exon 8284 9525 . - . ID=Physo109674.1;Parent=Physo109674;constitutive=1;rank=1 scaffold_256 ensembl protein_coding_gene 13309 13584 . + . ID=Physo125446;biotype=protein_coding;external_name=estExt_Genewise1.C_2560012;logic_name=jgi_physo1_1 scaffold_256 ensembl transcript 13309 13584 . + . ID=Physo125446;Parent=Physo125446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_256 . exon 13309 13584 . + . ID=Physo125446.1;Parent=Physo125446;constitutive=1;ensembl_phase=-1;rank=1 scaffold_256 . CDS 13312 13584 . + 0 ID=Physo125446;Parent=Physo125446;rank=1 scaffold_256 ensembl protein_coding_gene 9987 11395 . + . ID=Physo144758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2560005;logic_name=jgi_physo1_1 scaffold_256 ensembl transcript 9987 11395 . + . ID=Physo144758;Parent=Physo144758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_256 . CDS 9987 10924 . + 0 ID=Physo144758;Parent=Physo144758;rank=1 scaffold_256 . exon 9987 10924 . + . ID=Physo144758.1;Parent=Physo144758;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_256 . CDS 10951 11395 . + 0 ID=Physo144758;Parent=Physo144758;rank=2 scaffold_256 . exon 10951 11395 . + . ID=Physo144758.2;Parent=Physo144758;constitutive=1;ensembl_phase=2;rank=2 scaffold_256 . repeat_region 17222 17384 . ? . description=trf scaffold_256 . biological_region 18493 18494 0.999 + . logic_name=eponine scaffold_256 . repeat_region 20638 20730 . ? . description=trf scaffold_256 . repeat_region 20739 20780 . ? . description=trf scaffold_256 . biological_region 21494 21495 0.999 - . logic_name=eponine scaffold_256 . repeat_region 23717 23892 . ? . description=trf scaffold_256 . repeat_region 23717 23892 . ? . description=trf scaffold_256 . biological_region 23764 23769 0.999 + . logic_name=eponine scaffold_256 . biological_region 23915 23919 0.999 - . logic_name=eponine scaffold_256 ensembl protein_coding_gene 20415 20879 . + . ID=Physo144759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2560006;logic_name=jgi_physo1_1 scaffold_256 ensembl transcript 20415 20879 . + . ID=Physo144759;Parent=Physo144759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_256 . CDS 20415 20879 . + 0 ID=Physo144759;Parent=Physo144759;rank=1 scaffold_256 . exon 20415 20879 . + . ID=Physo144759.1;Parent=Physo144759;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_252 1 25161 scaffold_252 . repeat_region 1874 1923 . ? . description=dust scaffold_252 . repeat_region 2866 2915 . ? . description=dust scaffold_252 . repeat_region 3131 3166 . ? . description=trf scaffold_252 . repeat_region 3227 3279 . ? . description=trf scaffold_252 . repeat_region 3227 3279 . ? . description=trf scaffold_252 . repeat_region 5289 7351 . ? . description=dust scaffold_252 . biological_region 7622 7624 0.999 + . logic_name=eponine scaffold_252 . repeat_region 7843 7878 . ? . description=trf scaffold_252 . repeat_region 7945 7997 . ? . description=trf scaffold_252 . repeat_region 7945 7997 . ? . description=trf scaffold_252 ensembl protein_coding_gene 7379 7729 . + . ID=Physo125389;biotype=protein_coding;external_name=estExt_Genewise1.C_2520004;logic_name=jgi_physo1_1 scaffold_252 ensembl transcript 7379 7729 . + . ID=Physo125389;Parent=Physo125389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_252 . exon 7379 7729 . + . ID=Physo125389.1;Parent=Physo125389;constitutive=1;ensembl_phase=-1;rank=1 scaffold_252 . CDS 7400 7729 . + 0 ID=Physo125389;Parent=Physo125389;rank=1 scaffold_252 ensembl protein_coding_gene 1935 2663 . + . ID=Physo144733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2520001;logic_name=jgi_physo1_1 scaffold_252 ensembl transcript 1935 2663 . + . ID=Physo144733;Parent=Physo144733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_252 . CDS 1935 2663 . + 0 ID=Physo144733;Parent=Physo144733;rank=1 scaffold_252 . exon 1935 2663 . + . ID=Physo144733.1;Parent=Physo144733;constitutive=1;rank=1 scaffold_252 ensembl protein_coding_gene 3426 5085 . + . ID=Physo144734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2520002;logic_name=jgi_physo1_1 scaffold_252 ensembl transcript 3426 5085 . + . ID=Physo144734;Parent=Physo144734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_252 . CDS 3426 3962 . + 0 ID=Physo144734;Parent=Physo144734;rank=1 scaffold_252 . exon 3426 3962 . + . ID=Physo144734.1;Parent=Physo144734;constitutive=1;rank=1 scaffold_252 . CDS 3996 5044 . + 0 ID=Physo144734;Parent=Physo144734;rank=2 scaffold_252 . exon 3996 5044 . + . ID=Physo144734.2;Parent=Physo144734;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_252 . CDS 5070 5085 . + 0 ID=Physo144734;Parent=Physo144734;rank=3 scaffold_252 . exon 5070 5085 . + . ID=Physo144734.3;Parent=Physo144734;constitutive=1;ensembl_phase=2;rank=3 scaffold_252 ensembl protein_coding_gene 13881 15482 . + . ID=Physo109671;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2520002;logic_name=jgi_physo1_1 scaffold_252 ensembl transcript 13881 15482 . + . ID=Physo109671;Parent=Physo109671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_252 . CDS 13881 15482 . + 0 ID=Physo109671;Parent=Physo109671;rank=1 scaffold_252 . exon 13881 15482 . + . ID=Physo109671.1;Parent=Physo109671;constitutive=1;rank=1 scaffold_252 ensembl protein_coding_gene 15911 16168 . + . ID=Physo125407;biotype=protein_coding;external_name=estExt_Genewise1.C_2520022;logic_name=jgi_physo1_1 scaffold_252 ensembl transcript 15911 16168 . + . ID=Physo125407;Parent=Physo125407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_252 . exon 15911 16168 . + . ID=Physo125407.1;Parent=Physo125407;constitutive=1;ensembl_phase=-1;rank=1 scaffold_252 . CDS 15932 16168 . + 0 ID=Physo125407;Parent=Physo125407;rank=1 scaffold_252 ensembl protein_coding_gene 8959 13753 . + . ID=Physo144736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2520004;logic_name=jgi_physo1_1 scaffold_252 ensembl transcript 8959 13753 . + . ID=Physo144736;Parent=Physo144736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_252 . CDS 8959 9507 . + 0 ID=Physo144736;Parent=Physo144736;rank=1 scaffold_252 . exon 8959 9507 . + . ID=Physo144736.1;Parent=Physo144736;constitutive=1;rank=1 scaffold_252 . CDS 9536 10082 . + 0 ID=Physo144736;Parent=Physo144736;rank=2 scaffold_252 . exon 9536 10082 . + . ID=Physo144736.2;Parent=Physo144736;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_252 . CDS 10242 11515 . + 0 ID=Physo144736;Parent=Physo144736;rank=3 scaffold_252 . exon 10242 11515 . + . ID=Physo144736.3;Parent=Physo144736;constitutive=1;ensembl_phase=1;rank=3 scaffold_252 . CDS 13461 13751 . + 0 ID=Physo144736;Parent=Physo144736;rank=4 scaffold_252 . exon 13461 13753 . + . ID=Physo144736.4;Parent=Physo144736;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_252 . repeat_region 17450 17457 . ? . description=dust scaffold_252 . repeat_region 18755 18790 . ? . description=trf scaffold_252 . repeat_region 18795 18825 . ? . description=trf scaffold_252 . repeat_region 18865 18917 . ? . description=trf scaffold_252 . repeat_region 18865 18917 . ? . description=trf scaffold_252 . repeat_region 19316 23751 . ? . description=dust scaffold_252 . biological_region 23886 23888 0.999 + . logic_name=eponine scaffold_252 . repeat_region 24107 24142 . ? . description=trf scaffold_252 . repeat_region 24147 24177 . ? . description=trf scaffold_252 . repeat_region 24217 24269 . ? . description=trf scaffold_252 . repeat_region 24217 24269 . ? . description=trf scaffold_252 ensembl protein_coding_gene 23763 23885 . + . ID=Physo125411;biotype=protein_coding;external_name=estExt_Genewise1.C_2520026;logic_name=jgi_physo1_1 scaffold_252 ensembl transcript 23763 23885 . + . ID=Physo125411;Parent=Physo125411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_252 . CDS 23763 23885 . + 0 ID=Physo125411;Parent=Physo125411;rank=1 scaffold_252 . exon 23763 23885 . + . ID=Physo125411.1;Parent=Physo125411;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_254 1 25235 scaffold_254 . repeat_region 1167 1207 . ? . description=trf scaffold_254 . biological_region 2582 2586 0.999 + . logic_name=eponine scaffold_254 . biological_region 3335 3339 0.999 - . logic_name=eponine scaffold_254 . biological_region 3685 3688 0.999 + . logic_name=eponine scaffold_254 . repeat_region 4393 4441 . + . description=(CTG)n scaffold_254 . biological_region 4783 4787 0.999 - . logic_name=eponine scaffold_254 . biological_region 4861 4867 0.999 + . logic_name=eponine scaffold_254 . repeat_region 8065 8141 . ? . description=dust scaffold_254 ensembl protein_coding_gene 387 2342 . + . ID=Physo144750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2540001;logic_name=jgi_physo1_1 scaffold_254 ensembl transcript 387 2342 . + . ID=Physo144750;Parent=Physo144750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_254 . CDS 387 938 . + 0 ID=Physo144750;Parent=Physo144750;rank=1 scaffold_254 . exon 387 938 . + . ID=Physo144750.1;Parent=Physo144750;constitutive=1;rank=1 scaffold_254 . CDS 967 1261 . + 0 ID=Physo144750;Parent=Physo144750;rank=2 scaffold_254 . exon 967 1261 . + . ID=Physo144750.2;Parent=Physo144750;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_254 . CDS 1339 1483 . + 0 ID=Physo144750;Parent=Physo144750;rank=3 scaffold_254 . exon 1339 1483 . + . ID=Physo144750.3;Parent=Physo144750;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_254 . CDS 1646 2342 . + 0 ID=Physo144750;Parent=Physo144750;rank=4 scaffold_254 . exon 1646 2342 . + . ID=Physo144750.4;Parent=Physo144750;constitutive=1;ensembl_phase=2;rank=4 scaffold_254 ensembl protein_coding_gene 2421 8477 . - . ID=Physo144751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2540002;logic_name=jgi_physo1_1 scaffold_254 ensembl transcript 2421 8477 . - . ID=Physo144751;Parent=Physo144751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_254 . CDS 2421 3905 . - 0 ID=Physo144751;Parent=Physo144751;rank=5 scaffold_254 . exon 2421 3905 . - . ID=Physo144751.6;Parent=Physo144751;constitutive=1;rank=6 scaffold_254 . CDS 4025 4031 . - 0 ID=Physo144751;Parent=Physo144751;rank=4 scaffold_254 . exon 4025 4031 . - . ID=Physo144751.5;Parent=Physo144751;constitutive=1;ensembl_phase=2;rank=5 scaffold_254 . CDS 4051 4165 . - 0 ID=Physo144751;Parent=Physo144751;rank=3 scaffold_254 . exon 4051 4165 . - . ID=Physo144751.4;Parent=Physo144751;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_254 . CDS 4235 5244 . - 0 ID=Physo144751;Parent=Physo144751;rank=2 scaffold_254 . exon 4235 5244 . - . ID=Physo144751.3;Parent=Physo144751;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_254 . CDS 5325 7783 . - 0 ID=Physo144751;Parent=Physo144751;rank=1 scaffold_254 . exon 5325 8230 . - . ID=Physo144751.2;Parent=Physo144751;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_254 ensembl protein_coding_gene 10468 11226 . - . ID=Physo125434;biotype=protein_coding;external_name=estExt_Genewise1.C_2540004;logic_name=jgi_physo1_1 scaffold_254 ensembl transcript 10468 11226 . - . ID=Physo125434;Parent=Physo125434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_254 . CDS 10468 10661 . - 0 ID=Physo125434;Parent=Physo125434;rank=2 scaffold_254 . exon 10468 10661 . - . ID=Physo125434.2;Parent=Physo125434;constitutive=1;ensembl_phase=1;rank=2 scaffold_254 . CDS 10965 11226 . - 0 ID=Physo125434;Parent=Physo125434;rank=1 scaffold_254 . exon 10965 11226 . - . ID=Physo125434.1;Parent=Physo125434;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_254 . exon 8450 8477 . - . ID=Physo144751.1;Parent=Physo144751;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_254 ensembl protein_coding_gene 8879 9835 . - . ID=Physo144752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2540003;logic_name=jgi_physo1_1 scaffold_254 ensembl transcript 8879 9835 . - . ID=Physo144752;Parent=Physo144752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_254 . CDS 8879 9312 . - 0 ID=Physo144752;Parent=Physo144752;rank=2 scaffold_254 . exon 8879 9312 . - . ID=Physo144752.2;Parent=Physo144752;constitutive=1;ensembl_phase=1;rank=2 scaffold_254 . CDS 9392 9821 . - 0 ID=Physo144752;Parent=Physo144752;rank=1 scaffold_254 . exon 9392 9835 . - . ID=Physo144752.1;Parent=Physo144752;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_254 ensembl protein_coding_gene 13541 15304 . + . ID=Physo144753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2540004;logic_name=jgi_physo1_1 scaffold_254 ensembl transcript 13541 15304 . + . ID=Physo144753;Parent=Physo144753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_254 . CDS 13541 13703 . + 0 ID=Physo144753;Parent=Physo144753;rank=1 scaffold_254 . exon 13541 13703 . + . ID=Physo144753.1;Parent=Physo144753;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_254 . CDS 13772 15231 . + 0 ID=Physo144753;Parent=Physo144753;rank=2 scaffold_254 . exon 13772 15304 . + . ID=Physo144753.2;Parent=Physo144753;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_254 . biological_region 19211 19212 0.999 + . logic_name=eponine scaffold_254 . repeat_region 21086 21093 . ? . description=dust scaffold_254 . repeat_region 21143 21160 . ? . description=dust scaffold_254 . repeat_region 23187 24276 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_253 1 25297 scaffold_253 . biological_region 1320 1321 0.999 - . logic_name=eponine scaffold_253 . biological_region 1374 1378 0.999 + . logic_name=eponine scaffold_253 . repeat_region 4443 4468 . ? . description=trf scaffold_253 . repeat_region 7836 7882 . ? . description=trf scaffold_253 . biological_region 8083 8085 0.999 + . logic_name=eponine scaffold_253 . biological_region 8316 8318 0.999 - . logic_name=eponine scaffold_253 . biological_region 8332 8335 0.999 - . logic_name=eponine scaffold_253 . biological_region 8361 8362 0.999 - . logic_name=eponine scaffold_253 . biological_region 8367 8370 0.999 + . logic_name=eponine scaffold_253 ensembl protein_coding_gene 1130 3046 . + . ID=Physo144739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2530001;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 1130 3046 . + . ID=Physo144739;Parent=Physo144739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . exon 1130 1618 . + . ID=Physo144739.1;Parent=Physo144739;constitutive=1;ensembl_phase=-1;rank=1 scaffold_253 . CDS 1139 1618 . + 0 ID=Physo144739;Parent=Physo144739;rank=1 scaffold_253 . CDS 1687 1823 . + 0 ID=Physo144739;Parent=Physo144739;rank=2 scaffold_253 . exon 1687 1823 . + . ID=Physo144739.2;Parent=Physo144739;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_253 . CDS 1865 1946 . + 0 ID=Physo144739;Parent=Physo144739;rank=3 scaffold_253 . exon 1865 1946 . + . ID=Physo144739.3;Parent=Physo144739;constitutive=1;ensembl_phase=2;rank=3 scaffold_253 . CDS 2036 2212 . + 0 ID=Physo144739;Parent=Physo144739;rank=4 scaffold_253 . exon 2036 2212 . + . ID=Physo144739.4;Parent=Physo144739;constitutive=1;rank=4 scaffold_253 . CDS 2281 2495 . + 0 ID=Physo144739;Parent=Physo144739;rank=5 scaffold_253 . exon 2281 2495 . + . ID=Physo144739.5;Parent=Physo144739;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_253 . CDS 2577 2839 . + 0 ID=Physo144739;Parent=Physo144739;rank=6 scaffold_253 . exon 2577 2839 . + . ID=Physo144739.6;Parent=Physo144739;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_253 . CDS 2933 3024 . + 0 ID=Physo144739;Parent=Physo144739;rank=7 scaffold_253 . exon 2933 3046 . + . ID=Physo144739.7;Parent=Physo144739;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_253 ensembl protein_coding_gene 3055 5251 . - . ID=Physo144740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2530002;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 3055 5251 . - . ID=Physo144740;Parent=Physo144740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . CDS 3055 3177 . - 0 ID=Physo144740;Parent=Physo144740;rank=2 scaffold_253 . exon 3055 3177 . - . ID=Physo144740.2;Parent=Physo144740;constitutive=1;rank=2 scaffold_253 . CDS 3263 5251 . - 0 ID=Physo144740;Parent=Physo144740;rank=1 scaffold_253 . exon 3263 5251 . - . ID=Physo144740.1;Parent=Physo144740;constitutive=1;rank=1 scaffold_253 ensembl protein_coding_gene 7833 8663 . - . ID=Physo144741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2530003;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 7833 8663 . - . ID=Physo144741;Parent=Physo144741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . CDS 7833 8663 . - 0 ID=Physo144741;Parent=Physo144741;rank=1 scaffold_253 . exon 7833 8663 . - . ID=Physo144741.1;Parent=Physo144741;constitutive=1;rank=1 scaffold_253 . repeat_region 12548 12604 . ? . description=dust scaffold_253 . repeat_region 12666 12699 . ? . description=dust scaffold_253 . repeat_region 14552 14599 . ? . description=dust scaffold_253 ensembl protein_coding_gene 9514 10668 . + . ID=Physo109673;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2530001;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 9514 10668 . + . ID=Physo109673;Parent=Physo109673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . CDS 9514 9533 . + 0 ID=Physo109673;Parent=Physo109673;rank=1 scaffold_253 . exon 9514 9533 . + . ID=Physo109673.1;Parent=Physo109673;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_253 . CDS 9585 10127 . + 0 ID=Physo109673;Parent=Physo109673;rank=2 scaffold_253 . exon 9585 10127 . + . ID=Physo109673.2;Parent=Physo109673;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_253 . CDS 10209 10668 . + 0 ID=Physo109673;Parent=Physo109673;rank=3 scaffold_253 . exon 10209 10668 . + . ID=Physo109673.3;Parent=Physo109673;constitutive=1;ensembl_phase=2;rank=3 scaffold_253 ensembl protein_coding_gene 13082 15252 . + . ID=Physo125429;biotype=protein_coding;external_name=estExt_Genewise1.C_2530016;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 13082 15252 . + . ID=Physo125429;Parent=Physo125429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . exon 13082 14428 . + . ID=Physo125429.1;Parent=Physo125429;constitutive=1;ensembl_phase=-1;rank=1 scaffold_253 . CDS 13376 14428 . + 0 ID=Physo125429;Parent=Physo125429;rank=1 scaffold_253 . CDS 14534 15250 . + 0 ID=Physo125429;Parent=Physo125429;rank=2 scaffold_253 . exon 14534 15252 . + . ID=Physo125429.2;Parent=Physo125429;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_253 ensembl protein_coding_gene 10892 12653 . - . ID=Physo144743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2530005;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 10892 12653 . - . ID=Physo144743;Parent=Physo144743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . exon 10892 12653 . - . ID=Physo144743.1;Parent=Physo144743;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_253 . CDS 11109 12653 . - 0 ID=Physo144743;Parent=Physo144743;rank=1 scaffold_253 ensembl protein_coding_gene 15451 20745 . - . ID=Physo144745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2530007;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 15451 20745 . - . ID=Physo144745;Parent=Physo144745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . CDS 15451 16066 . - 0 ID=Physo144745;Parent=Physo144745;rank=2 scaffold_253 . exon 15451 16066 . - . ID=Physo144745.2;Parent=Physo144745;constitutive=1;ensembl_phase=2;rank=2 scaffold_253 . CDS 16166 20745 . - 0 ID=Physo144745;Parent=Physo144745;rank=1 scaffold_253 . exon 16166 20745 . - . ID=Physo144745.1;Parent=Physo144745;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_253 . biological_region 17515 17518 0.999 - . logic_name=eponine scaffold_253 . biological_region 17749 17752 0.999 + . logic_name=eponine scaffold_253 . biological_region 18765 18766 0.999 + . logic_name=eponine scaffold_253 . biological_region 18910 18914 0.999 - . logic_name=eponine scaffold_253 . biological_region 19439 19441 0.999 - . logic_name=eponine scaffold_253 . biological_region 19871 19873 0.999 + . logic_name=eponine scaffold_253 . biological_region 20478 20482 0.999 - . logic_name=eponine scaffold_253 . repeat_region 21330 21379 . ? . description=trf scaffold_253 . repeat_region 21338 21384 . ? . description=trf scaffold_253 . repeat_region 21557 21591 . ? . description=trf scaffold_253 . biological_region 21802 21806 0.999 - . logic_name=eponine scaffold_253 . biological_region 21857 21861 0.999 + . logic_name=eponine scaffold_253 . biological_region 21888 21890 0.999 - . logic_name=eponine scaffold_253 . biological_region 21942 21949 0.999 + . logic_name=eponine scaffold_253 . biological_region 21958 21964 0.999 - . logic_name=eponine scaffold_253 . biological_region 22008 22009 0.999 - . logic_name=eponine scaffold_253 . biological_region 22415 22419 0.999 + . logic_name=eponine scaffold_253 . biological_region 22428 22428 0.999 - . logic_name=eponine scaffold_253 . biological_region 22514 22519 0.999 - . logic_name=eponine scaffold_253 . repeat_region 22687 22728 . ? . description=trf scaffold_253 . biological_region 22746 22747 0.999 - . logic_name=eponine scaffold_253 . repeat_region 24938 24975 . ? . description=trf scaffold_253 . repeat_region 25013 25127 . ? . description=trf scaffold_253 . repeat_region 25054 25098 . ? . description=trf scaffold_253 ensembl protein_coding_gene 21029 22069 . - . ID=Physo144746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2530008;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 21029 22069 . - . ID=Physo144746;Parent=Physo144746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . CDS 21029 22069 . - 0 ID=Physo144746;Parent=Physo144746;rank=1 scaffold_253 . exon 21029 22069 . - . ID=Physo144746.1;Parent=Physo144746;constitutive=1;rank=1 scaffold_253 ensembl protein_coding_gene 22340 22912 . + . ID=Physo144747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2530009;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 22340 22912 . + . ID=Physo144747;Parent=Physo144747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . CDS 22340 22912 . + 0 ID=Physo144747;Parent=Physo144747;rank=1 scaffold_253 . exon 22340 22912 . + . ID=Physo144747.1;Parent=Physo144747;constitutive=1;rank=1 scaffold_253 ensembl protein_coding_gene 23150 24339 . - . ID=Physo144748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2530010;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 23150 24339 . - . ID=Physo144748;Parent=Physo144748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . CDS 23150 23517 . - 0 ID=Physo144748;Parent=Physo144748;rank=3 scaffold_253 . exon 23150 23517 . - . ID=Physo144748.3;Parent=Physo144748;constitutive=1;ensembl_phase=1;rank=3 scaffold_253 . CDS 23596 24103 . - 0 ID=Physo144748;Parent=Physo144748;rank=2 scaffold_253 . exon 23596 24103 . - . ID=Physo144748.2;Parent=Physo144748;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_253 . CDS 24196 24339 . - 0 ID=Physo144748;Parent=Physo144748;rank=1 scaffold_253 . exon 24196 24339 . - . ID=Physo144748.1;Parent=Physo144748;constitutive=1;rank=1 scaffold_253 ensembl protein_coding_gene 24941 25297 . - . ID=Physo144749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2530011;logic_name=jgi_physo1_1 scaffold_253 ensembl transcript 24941 25297 . - . ID=Physo144749;Parent=Physo144749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_253 . CDS 24941 25297 . - 0 ID=Physo144749;Parent=Physo144749;rank=1 scaffold_253 . exon 24941 25297 . - . ID=Physo144749.1;Parent=Physo144749;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_251 1 25857 scaffold_251 . repeat_region 2566 2632 . ? . description=trf scaffold_251 . repeat_region 3638 3690 . ? . description=trf scaffold_251 . biological_region 4840 4844 0.999 - . logic_name=eponine scaffold_251 . biological_region 4920 4924 0.999 + . logic_name=eponine scaffold_251 . repeat_region 5152 5199 . ? . description=trf scaffold_251 ensembl protein_coding_gene 34 1622 . - . ID=Physo144727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2510001;logic_name=jgi_physo1_1 scaffold_251 ensembl transcript 34 1622 . - . ID=Physo144727;Parent=Physo144727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_251 . exon 34 1130 . - . ID=Physo144727.2;Parent=Physo144727;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_251 . CDS 36 1130 . - 0 ID=Physo144727;Parent=Physo144727;rank=2 scaffold_251 . CDS 1416 1622 . - 0 ID=Physo144727;Parent=Physo144727;rank=1 scaffold_251 . exon 1416 1622 . - . ID=Physo144727.1;Parent=Physo144727;constitutive=1;rank=1 scaffold_251 ensembl protein_coding_gene 2487 6506 . - . ID=Physo144728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2510002;logic_name=jgi_physo1_1 scaffold_251 ensembl transcript 2487 6506 . - . ID=Physo144728;Parent=Physo144728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_251 . CDS 2487 3302 . - 0 ID=Physo144728;Parent=Physo144728;rank=6 scaffold_251 . exon 2487 3302 . - . ID=Physo144728.6;Parent=Physo144728;constitutive=1;rank=6 scaffold_251 . CDS 3342 3990 . - 0 ID=Physo144728;Parent=Physo144728;rank=5 scaffold_251 . exon 3342 3990 . - . ID=Physo144728.5;Parent=Physo144728;constitutive=1;ensembl_phase=2;rank=5 scaffold_251 . CDS 4121 4651 . - 0 ID=Physo144728;Parent=Physo144728;rank=4 scaffold_251 . exon 4121 4651 . - . ID=Physo144728.4;Parent=Physo144728;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_251 . CDS 4679 5229 . - 0 ID=Physo144728;Parent=Physo144728;rank=3 scaffold_251 . exon 4679 5229 . - . ID=Physo144728.3;Parent=Physo144728;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_251 . CDS 5307 5759 . - 0 ID=Physo144728;Parent=Physo144728;rank=2 scaffold_251 . exon 5307 5759 . - . ID=Physo144728.2;Parent=Physo144728;constitutive=1;rank=2 scaffold_251 . CDS 5832 6506 . - 0 ID=Physo144728;Parent=Physo144728;rank=1 scaffold_251 . exon 5832 6506 . - . ID=Physo144728.1;Parent=Physo144728;constitutive=1;rank=1 scaffold_251 ensembl protein_coding_gene 9629 11889 . - . ID=Physo144729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2510003;logic_name=jgi_physo1_1 scaffold_251 ensembl transcript 9629 11889 . - . ID=Physo144729;Parent=Physo144729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_251 . CDS 9629 9920 . - 0 ID=Physo144729;Parent=Physo144729;rank=3 scaffold_251 . exon 9629 9920 . - . ID=Physo144729.3;Parent=Physo144729;constitutive=1;ensembl_phase=2;rank=3 scaffold_251 . CDS 10016 10939 . - 0 ID=Physo144729;Parent=Physo144729;rank=2 scaffold_251 . exon 10016 10939 . - . ID=Physo144729.2;Parent=Physo144729;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_251 . CDS 10982 11889 . - 0 ID=Physo144729;Parent=Physo144729;rank=1 scaffold_251 . exon 10982 11889 . - . ID=Physo144729.1;Parent=Physo144729;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_251 . biological_region 17715 17719 0.999 + . logic_name=eponine scaffold_251 . biological_region 17758 17765 0.999 - . logic_name=eponine scaffold_251 . biological_region 17792 17794 0.999 + . logic_name=eponine scaffold_251 . biological_region 17808 17811 0.999 - . logic_name=eponine scaffold_251 . biological_region 17814 17822 0.999 + . logic_name=eponine scaffold_251 . biological_region 17845 17847 0.999 + . logic_name=eponine scaffold_251 . biological_region 17850 17855 0.999 - . logic_name=eponine scaffold_251 . biological_region 18084 18089 0.999 + . logic_name=eponine scaffold_251 . biological_region 18110 18113 0.999 + . logic_name=eponine scaffold_251 . biological_region 18136 18140 0.999 + . logic_name=eponine scaffold_251 . biological_region 18151 18156 0.999 - . logic_name=eponine scaffold_251 . biological_region 18187 18189 0.999 - . logic_name=eponine scaffold_251 . repeat_region 18796 18845 . ? . description=dust scaffold_251 . biological_region 21233 21233 0.999 - . logic_name=eponine scaffold_251 . biological_region 21286 21291 0.999 + . logic_name=eponine scaffold_251 . biological_region 21940 21947 0.999 - . logic_name=eponine scaffold_251 . biological_region 21974 21976 0.999 + . logic_name=eponine scaffold_251 . biological_region 21990 21993 0.999 - . logic_name=eponine scaffold_251 . biological_region 21996 22004 0.999 + . logic_name=eponine scaffold_251 . biological_region 22032 22037 0.999 - . logic_name=eponine scaffold_251 . repeat_region 22073 22122 . ? . description=dust scaffold_251 . biological_region 22184 22194 0.999 + . logic_name=eponine scaffold_251 . biological_region 22211 22214 0.999 + . logic_name=eponine scaffold_251 . biological_region 22236 22241 0.999 + . logic_name=eponine scaffold_251 . biological_region 22252 22257 0.999 - . logic_name=eponine scaffold_251 . biological_region 22288 22290 0.999 - . logic_name=eponine scaffold_251 . biological_region 22296 22296 0.999 + . logic_name=eponine scaffold_251 . biological_region 22316 22319 0.999 - . logic_name=eponine scaffold_251 . biological_region 22348 22353 0.999 - . logic_name=eponine scaffold_251 . biological_region 22643 22645 0.999 - . logic_name=eponine scaffold_251 . biological_region 22666 22670 0.999 + . logic_name=eponine scaffold_251 . biological_region 22713 22714 0.999 - . logic_name=eponine scaffold_251 . biological_region 22782 22789 0.999 - . logic_name=eponine scaffold_251 . biological_region 22807 22811 0.999 - . logic_name=eponine scaffold_251 . repeat_region 24585 24634 . ? . description=dust scaffold_251 ensembl protein_coding_gene 17659 22836 . + . ID=Physo125384;biotype=protein_coding;external_name=estExt_Genewise1.C_2510008;logic_name=jgi_physo1_1 scaffold_251 ensembl transcript 17659 22836 . + . ID=Physo125384;Parent=Physo125384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_251 . exon 17659 18090 . + . ID=Physo125384.1;Parent=Physo125384;constitutive=1;ensembl_phase=-1;rank=1 scaffold_251 . CDS 17722 18090 . + 0 ID=Physo125384;Parent=Physo125384;rank=1 scaffold_251 . CDS 22189 22836 . + 0 ID=Physo125384;Parent=Physo125384;rank=2 scaffold_251 . exon 22189 22836 . + . ID=Physo125384.2;Parent=Physo125384;constitutive=1;rank=2 scaffold_251 ensembl protein_coding_gene 22952 24093 . - . ID=Physo144732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2510006;logic_name=jgi_physo1_1 scaffold_251 ensembl transcript 22952 24093 . - . ID=Physo144732;Parent=Physo144732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_251 . exon 22952 23146 . - . ID=Physo144732.2;Parent=Physo144732;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_251 . CDS 22972 23146 . - 0 ID=Physo144732;Parent=Physo144732;rank=2 scaffold_251 . CDS 23175 23656 . - 0 ID=Physo144732;Parent=Physo144732;rank=1 scaffold_251 . exon 23175 24093 . - . ID=Physo144732.1;Parent=Physo144732;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_250 1 25893 scaffold_250 . repeat_region 74 101 . ? . description=trf scaffold_250 . repeat_region 786 1597 . ? . description=dust scaffold_250 . repeat_region 1872 1893 . ? . description=dust scaffold_250 . repeat_region 2275 2303 . ? . description=trf scaffold_250 . repeat_region 5452 5488 . ? . description=trf scaffold_250 . repeat_region 6273 6281 . ? . description=dust scaffold_250 . biological_region 7763 7764 0.999 + . logic_name=eponine scaffold_250 . biological_region 7771 7775 0.999 - . logic_name=eponine scaffold_250 ensembl protein_coding_gene 4657 10204 . + . ID=Physo144724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2500001;logic_name=jgi_physo1_1 scaffold_250 ensembl transcript 4657 10204 . + . ID=Physo144724;Parent=Physo144724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_250 . CDS 4657 4722 . + 0 ID=Physo144724;Parent=Physo144724;rank=1 scaffold_250 . exon 4657 4722 . + . ID=Physo144724.1;Parent=Physo144724;constitutive=1;rank=1 scaffold_250 . CDS 4791 5186 . + 0 ID=Physo144724;Parent=Physo144724;rank=2 scaffold_250 . exon 4791 5186 . + . ID=Physo144724.2;Parent=Physo144724;constitutive=1;rank=2 scaffold_250 . CDS 5272 5313 . + 0 ID=Physo144724;Parent=Physo144724;rank=3 scaffold_250 . exon 5272 5415 . + . ID=Physo144724.3;Parent=Physo144724;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_250 ensembl pseudogene 11212 11817 . - . ID=Physo125375;biotype=pseudogene;external_name=estExt_Genewise1.C_2500005;logic_name=jgi_physo1_1 scaffold_250 ensembl pseudogene 11212 11817 . - . ID=Physo125375;Parent=Physo125375;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_250 . exon 11212 11385 . - . ID=Physo125375.2;Parent=Physo125375;constitutive=1;rank=2 scaffold_250 . exon 11731 11817 . - . ID=Physo125375.1;Parent=Physo125375;constitutive=1;rank=1 scaffold_250 . exon 9836 10204 . + . ID=Physo144724.4;Parent=Physo144724;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_250 . biological_region 17859 17859 0.999 + . logic_name=eponine scaffold_250 . biological_region 17932 17938 0.999 - . logic_name=eponine scaffold_250 . biological_region 17956 17957 0.999 + . logic_name=eponine scaffold_250 . biological_region 17958 17962 0.999 - . logic_name=eponine scaffold_250 . biological_region 17965 17968 0.999 - . logic_name=eponine scaffold_250 . biological_region 17987 17994 0.999 + . logic_name=eponine scaffold_250 . biological_region 18091 18095 0.999 - . logic_name=eponine scaffold_250 . biological_region 18871 18873 0.999 + . logic_name=eponine scaffold_250 . repeat_region 22081 22143 . ? . description=dust scaffold_250 . repeat_region 22081 22143 . ? . description=trf scaffold_250 . repeat_region 23133 23182 . ? . description=dust scaffold_250 . repeat_region 23776 23832 . ? . description=dust scaffold_250 . repeat_region 23776 23832 . ? . description=trf scaffold_250 . repeat_region 25140 25170 . ? . description=trf scaffold_250 ensembl protein_coding_gene 17770 18640 . + . ID=Physo144726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2500003;logic_name=jgi_physo1_1 scaffold_250 ensembl transcript 17770 18640 . + . ID=Physo144726;Parent=Physo144726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_250 . CDS 17770 17778 . + 0 ID=Physo144726;Parent=Physo144726;rank=1 scaffold_250 . exon 17770 17778 . + . ID=Physo144726.1;Parent=Physo144726;constitutive=1;rank=1 scaffold_250 . CDS 17984 18097 . + 0 ID=Physo144726;Parent=Physo144726;rank=2 scaffold_250 . exon 17984 18097 . + . ID=Physo144726.2;Parent=Physo144726;constitutive=1;rank=2 scaffold_250 . CDS 18118 18159 . + 0 ID=Physo144726;Parent=Physo144726;rank=3 scaffold_250 . exon 18118 18159 . + . ID=Physo144726.3;Parent=Physo144726;constitutive=1;rank=3 scaffold_250 . CDS 18284 18640 . + 0 ID=Physo144726;Parent=Physo144726;rank=4 scaffold_250 . exon 18284 18640 . + . ID=Physo144726.4;Parent=Physo144726;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_249 1 26696 scaffold_249 . repeat_region 255 283 . ? . description=dust scaffold_249 . biological_region 5386 5387 0.999 + . logic_name=eponine scaffold_249 . biological_region 5411 5415 0.999 + . logic_name=eponine scaffold_249 . biological_region 5783 5786 0.999 - . logic_name=eponine scaffold_249 . biological_region 6058 6060 0.999 - . logic_name=eponine scaffold_249 . repeat_region 6178 6227 . ? . description=dust scaffold_249 . repeat_region 6518 6551 . ? . description=trf scaffold_249 ensembl protein_coding_gene 1680 1955 . - . ID=Physo125370;biotype=protein_coding;external_name=estExt_Genewise1.C_2490005;logic_name=jgi_physo1_1 scaffold_249 ensembl transcript 1680 1955 . - . ID=Physo125370;Parent=Physo125370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_249 . CDS 1680 1952 . - 0 ID=Physo125370;Parent=Physo125370;rank=1 scaffold_249 . exon 1680 1955 . - . ID=Physo125370.1;Parent=Physo125370;constitutive=1;ensembl_phase=-1;rank=1 scaffold_249 ensembl protein_coding_gene 4650 5075 . - . ID=Physo144719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2490002;logic_name=jgi_physo1_1 scaffold_249 ensembl transcript 4650 5075 . - . ID=Physo144719;Parent=Physo144719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_249 . CDS 4650 5075 . - 0 ID=Physo144719;Parent=Physo144719;rank=1 scaffold_249 . exon 4650 5075 . - . ID=Physo144719.1;Parent=Physo144719;constitutive=1;rank=1 scaffold_249 ensembl protein_coding_gene 5380 6287 . + . ID=Physo144720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2490003;logic_name=jgi_physo1_1 scaffold_249 ensembl transcript 5380 6287 . + . ID=Physo144720;Parent=Physo144720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_249 . CDS 5380 6164 . + 0 ID=Physo144720;Parent=Physo144720;rank=1 scaffold_249 . exon 5380 6164 . + . ID=Physo144720.1;Parent=Physo144720;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_249 . CDS 6269 6287 . + 0 ID=Physo144720;Parent=Physo144720;rank=2 scaffold_249 . exon 6269 6287 . + . ID=Physo144720.2;Parent=Physo144720;constitutive=1;ensembl_phase=2;rank=2 scaffold_249 ensembl protein_coding_gene 8660 10051 . - . ID=Physo144721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2490004;logic_name=jgi_physo1_1 scaffold_249 ensembl transcript 8660 10051 . - . ID=Physo144721;Parent=Physo144721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_249 . exon 8660 8694 . - . ID=Physo144721.5;Parent=Physo144721;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_249 . exon 8757 8803 . - . ID=Physo144721.4;Parent=Physo144721;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_249 . exon 8887 8952 . - . ID=Physo144721.3;Parent=Physo144721;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_249 . CDS 8939 8952 . - 0 ID=Physo144721;Parent=Physo144721;rank=3 scaffold_249 . CDS 9015 9153 . - 0 ID=Physo144721;Parent=Physo144721;rank=2 scaffold_249 . CDS 9344 10051 . - 0 ID=Physo144721;Parent=Physo144721;rank=1 scaffold_249 . exon 9015 9153 . - . ID=Physo144721.2;Parent=Physo144721;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_249 . exon 9344 10051 . - . ID=Physo144721.1;Parent=Physo144721;constitutive=1;rank=1 scaffold_249 ensembl protein_coding_gene 10644 12000 . - . ID=Physo144722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2490005;logic_name=jgi_physo1_1 scaffold_249 ensembl transcript 10644 12000 . - . ID=Physo144722;Parent=Physo144722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_249 . CDS 10644 10685 . - 0 ID=Physo144722;Parent=Physo144722;rank=5 scaffold_249 . exon 10644 10685 . - . ID=Physo144722.5;Parent=Physo144722;constitutive=1;rank=5 scaffold_249 . CDS 10847 11053 . - 0 ID=Physo144722;Parent=Physo144722;rank=4 scaffold_249 . exon 10847 11053 . - . ID=Physo144722.4;Parent=Physo144722;constitutive=1;rank=4 scaffold_249 . CDS 11084 11287 . - 0 ID=Physo144722;Parent=Physo144722;rank=3 scaffold_249 . exon 11084 11287 . - . ID=Physo144722.3;Parent=Physo144722;constitutive=1;rank=3 scaffold_249 . CDS 11355 11549 . - 0 ID=Physo144722;Parent=Physo144722;rank=2 scaffold_249 . exon 11355 11549 . - . ID=Physo144722.2;Parent=Physo144722;constitutive=1;rank=2 scaffold_249 . CDS 11614 12000 . - 0 ID=Physo144722;Parent=Physo144722;rank=1 scaffold_249 . exon 11614 12000 . - . ID=Physo144722.1;Parent=Physo144722;constitutive=1;rank=1 scaffold_249 . repeat_region 13755 18370 . ? . description=dust scaffold_249 . repeat_region 18556 18563 . ? . description=dust scaffold_249 . repeat_region 20121 20826 . ? . description=dust scaffold_249 . repeat_region 22036 22043 . ? . description=dust scaffold_249 . repeat_region 22809 25256 . ? . description=dust scaffold_249 ensembl protein_coding_gene 20997 22012 . + . ID=Physo144723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2490006;logic_name=jgi_physo1_1 scaffold_249 ensembl transcript 20997 22012 . + . ID=Physo144723;Parent=Physo144723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_249 . CDS 20997 21271 . + 0 ID=Physo144723;Parent=Physo144723;rank=1 scaffold_249 . exon 20997 21271 . + . ID=Physo144723.1;Parent=Physo144723;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_249 . CDS 21298 22012 . + 0 ID=Physo144723;Parent=Physo144723;rank=2 scaffold_249 . exon 21298 22012 . + . ID=Physo144723.2;Parent=Physo144723;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_246 1 27211 scaffold_246 . repeat_region 3945 4355 . ? . description=dust scaffold_246 . repeat_region 6302 6360 . ? . description=trf scaffold_246 . repeat_region 7986 11917 . ? . description=dust scaffold_246 ensembl protein_coding_gene 644 1458 . + . ID=Physo144700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2460001;logic_name=jgi_physo1_1 scaffold_246 ensembl transcript 644 1458 . + . ID=Physo144700;Parent=Physo144700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_246 . CDS 644 1096 . + 0 ID=Physo144700;Parent=Physo144700;rank=1 scaffold_246 . exon 644 1096 . + . ID=Physo144700.1;Parent=Physo144700;constitutive=1;rank=1 scaffold_246 . CDS 1222 1458 . + 0 ID=Physo144700;Parent=Physo144700;rank=2 scaffold_246 . exon 1222 1458 . + . ID=Physo144700.2;Parent=Physo144700;constitutive=1;rank=2 scaffold_246 ensembl protein_coding_gene 1880 3178 . + . ID=Physo144701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2460002;logic_name=jgi_physo1_1 scaffold_246 ensembl transcript 1880 3178 . + . ID=Physo144701;Parent=Physo144701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_246 . CDS 1880 1950 . + 0 ID=Physo144701;Parent=Physo144701;rank=1 scaffold_246 . exon 1880 1950 . + . ID=Physo144701.1;Parent=Physo144701;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_246 . CDS 2006 2228 . + 0 ID=Physo144701;Parent=Physo144701;rank=2 scaffold_246 . exon 2006 2228 . + . ID=Physo144701.2;Parent=Physo144701;constitutive=1;ensembl_phase=2;rank=2 scaffold_246 . CDS 2298 2399 . + 0 ID=Physo144701;Parent=Physo144701;rank=3 scaffold_246 . exon 2298 2399 . + . ID=Physo144701.3;Parent=Physo144701;constitutive=1;rank=3 scaffold_246 . CDS 2673 2702 . + 0 ID=Physo144701;Parent=Physo144701;rank=4 scaffold_246 . exon 2673 2702 . + . ID=Physo144701.4;Parent=Physo144701;constitutive=1;rank=4 scaffold_246 . CDS 2771 3178 . + 0 ID=Physo144701;Parent=Physo144701;rank=5 scaffold_246 . exon 2771 3178 . + . ID=Physo144701.5;Parent=Physo144701;constitutive=1;rank=5 scaffold_246 ensembl protein_coding_gene 7410 7985 . - . ID=Physo144702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2460003;logic_name=jgi_physo1_1 scaffold_246 ensembl transcript 7410 7985 . - . ID=Physo144702;Parent=Physo144702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_246 . exon 7410 7811 . - . ID=Physo144702.2;Parent=Physo144702;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_246 . CDS 7437 7811 . - 0 ID=Physo144702;Parent=Physo144702;rank=2 scaffold_246 . CDS 7885 7929 . - 0 ID=Physo144702;Parent=Physo144702;rank=1 scaffold_246 . exon 7885 7985 . - . ID=Physo144702.1;Parent=Physo144702;constitutive=1;ensembl_phase=-1;rank=1 scaffold_246 . biological_region 12509 12512 0.999 - . logic_name=eponine scaffold_246 . biological_region 12713 12718 0.999 + . logic_name=eponine scaffold_246 . biological_region 12772 12777 0.999 - . logic_name=eponine scaffold_246 . biological_region 12778 12780 0.999 + . logic_name=eponine scaffold_246 . biological_region 12790 12797 0.999 + . logic_name=eponine scaffold_246 . biological_region 12811 12812 0.999 - . logic_name=eponine scaffold_246 . biological_region 17394 17394 0.999 - . logic_name=eponine scaffold_246 ensembl protein_coding_gene 13054 13784 . + . ID=Physo144703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2460004;logic_name=jgi_physo1_1 scaffold_246 ensembl transcript 13054 13784 . + . ID=Physo144703;Parent=Physo144703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_246 . CDS 13054 13150 . + 0 ID=Physo144703;Parent=Physo144703;rank=1 scaffold_246 . exon 13054 13150 . + . ID=Physo144703.1;Parent=Physo144703;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_246 . CDS 13277 13477 . + 0 ID=Physo144703;Parent=Physo144703;rank=2 scaffold_246 . exon 13277 13477 . + . ID=Physo144703.2;Parent=Physo144703;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_246 . CDS 13593 13783 . + 0 ID=Physo144703;Parent=Physo144703;rank=3 scaffold_246 . exon 13593 13784 . + . ID=Physo144703.3;Parent=Physo144703;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_246 . repeat_region 20822 20831 . ? . description=dust scaffold_246 . repeat_region 22837 22951 . ? . description=dust scaffold_246 . repeat_region 23001 23010 . ? . description=dust scaffold_246 . repeat_region 23091 23100 . ? . description=dust scaffold_246 . repeat_region 24591 24640 . ? . description=dust scaffold_246 . repeat_region 25657 26319 . ? . description=dust scaffold_246 ensembl protein_coding_gene 18839 19207 . + . ID=Physo144704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2460005;logic_name=jgi_physo1_1 scaffold_246 ensembl transcript 18839 19207 . + . ID=Physo144704;Parent=Physo144704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_246 . CDS 18839 19207 . + 0 ID=Physo144704;Parent=Physo144704;rank=1 scaffold_246 . exon 18839 19207 . + . ID=Physo144704.1;Parent=Physo144704;constitutive=1;rank=1 scaffold_246 ensembl protein_coding_gene 19388 20354 . - . ID=Physo144705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2460006;logic_name=jgi_physo1_1 scaffold_246 ensembl transcript 19388 20354 . - . ID=Physo144705;Parent=Physo144705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_246 . CDS 19388 19398 . - 0 ID=Physo144705;Parent=Physo144705;rank=3 scaffold_246 . exon 19388 19398 . - . ID=Physo144705.3;Parent=Physo144705;constitutive=1;ensembl_phase=1;rank=3 scaffold_246 . CDS 19557 20294 . - 0 ID=Physo144705;Parent=Physo144705;rank=2 scaffold_246 . exon 19557 20294 . - . ID=Physo144705.2;Parent=Physo144705;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_246 . CDS 20315 20354 . - 0 ID=Physo144705;Parent=Physo144705;rank=1 scaffold_246 . exon 20315 20354 . - . ID=Physo144705.1;Parent=Physo144705;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_246 ensembl protein_coding_gene 20686 21494 . + . ID=Physo144706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2460007;logic_name=jgi_physo1_1 scaffold_246 ensembl transcript 20686 21494 . + . ID=Physo144706;Parent=Physo144706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_246 . exon 20686 20755 . + . ID=Physo144706.1;Parent=Physo144706;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_246 . CDS 20752 20755 . + 0 ID=Physo144706;Parent=Physo144706;rank=1 scaffold_246 . CDS 20779 21494 . + 0 ID=Physo144706;Parent=Physo144706;rank=2 scaffold_246 . exon 20779 21494 . + . ID=Physo144706.2;Parent=Physo144706;constitutive=1;ensembl_phase=1;rank=2 scaffold_246 ensembl protein_coding_gene 23643 27198 . + . ID=Physo144707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2460008;logic_name=jgi_physo1_1 scaffold_246 ensembl transcript 23643 27198 . + . ID=Physo144707;Parent=Physo144707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_246 . CDS 23643 24311 . + 0 ID=Physo144707;Parent=Physo144707;rank=1 scaffold_246 . exon 23643 24311 . + . ID=Physo144707.1;Parent=Physo144707;constitutive=1;rank=1 scaffold_246 . CDS 24352 24564 . + 0 ID=Physo144707;Parent=Physo144707;rank=2 scaffold_246 . exon 24352 24564 . + . ID=Physo144707.2;Parent=Physo144707;constitutive=1;rank=2 scaffold_246 . CDS 24669 24860 . + 0 ID=Physo144707;Parent=Physo144707;rank=3 scaffold_246 . exon 24669 24860 . + . ID=Physo144707.3;Parent=Physo144707;constitutive=1;rank=3 scaffold_246 . CDS 24881 25011 . + 0 ID=Physo144707;Parent=Physo144707;rank=4 scaffold_246 . exon 24881 25011 . + . ID=Physo144707.4;Parent=Physo144707;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_246 . CDS 25051 25416 . + 0 ID=Physo144707;Parent=Physo144707;rank=5 scaffold_246 . exon 25051 25416 . + . ID=Physo144707.5;Parent=Physo144707;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_246 . CDS 25493 25633 . + 0 ID=Physo144707;Parent=Physo144707;rank=6 scaffold_246 . exon 25493 25633 . + . ID=Physo144707.6;Parent=Physo144707;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_246 . CDS 26477 27197 . + 0 ID=Physo144707;Parent=Physo144707;rank=7 scaffold_246 . exon 26477 27198 . + . ID=Physo144707.7;Parent=Physo144707;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 ##gff-version 3 ##sequence-region scaffold_248 1 27389 scaffold_248 . biological_region 1834 1835 0.999 + . logic_name=eponine scaffold_248 . biological_region 1988 1994 0.999 + . logic_name=eponine scaffold_248 . repeat_region 2552 3582 . ? . description=dust scaffold_248 . biological_region 5920 5924 0.999 + . logic_name=eponine scaffold_248 . biological_region 6086 6088 0.999 - . logic_name=eponine scaffold_248 . biological_region 6572 6573 0.999 + . logic_name=eponine scaffold_248 ensembl protein_coding_gene 7220 7912 . + . ID=Physo109669;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2480001;logic_name=jgi_physo1_1 scaffold_248 ensembl transcript 7220 7912 . + . ID=Physo109669;Parent=Physo109669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_248 . CDS 7220 7912 . + 0 ID=Physo109669;Parent=Physo109669;rank=1 scaffold_248 . exon 7220 7912 . + . ID=Physo109669.1;Parent=Physo109669;constitutive=1;rank=1 scaffold_248 ensembl protein_coding_gene 634 1473 . - . ID=Physo144714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2480001;logic_name=jgi_physo1_1 scaffold_248 ensembl transcript 634 1473 . - . ID=Physo144714;Parent=Physo144714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_248 . CDS 634 954 . - 0 ID=Physo144714;Parent=Physo144714;rank=3 scaffold_248 . exon 634 954 . - . ID=Physo144714.3;Parent=Physo144714;constitutive=1;rank=3 scaffold_248 . CDS 976 1146 . - 0 ID=Physo144714;Parent=Physo144714;rank=2 scaffold_248 . exon 976 1146 . - . ID=Physo144714.2;Parent=Physo144714;constitutive=1;rank=2 scaffold_248 . CDS 1186 1473 . - 0 ID=Physo144714;Parent=Physo144714;rank=1 scaffold_248 . exon 1186 1473 . - . ID=Physo144714.1;Parent=Physo144714;constitutive=1;rank=1 scaffold_248 ensembl protein_coding_gene 3842 7100 . + . ID=Physo144715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2480002;logic_name=jgi_physo1_1 scaffold_248 ensembl transcript 3842 7100 . + . ID=Physo144715;Parent=Physo144715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_248 . CDS 3842 4178 . + 0 ID=Physo144715;Parent=Physo144715;rank=1 scaffold_248 . exon 3842 4178 . + . ID=Physo144715.1;Parent=Physo144715;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_248 . CDS 4451 5154 . + 0 ID=Physo144715;Parent=Physo144715;rank=2 scaffold_248 . exon 4451 5154 . + . ID=Physo144715.2;Parent=Physo144715;constitutive=1;ensembl_phase=1;rank=2 scaffold_248 . CDS 5239 6170 . + 0 ID=Physo144715;Parent=Physo144715;rank=3 scaffold_248 . exon 5239 6170 . + . ID=Physo144715.3;Parent=Physo144715;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_248 . CDS 6191 7100 . + 0 ID=Physo144715;Parent=Physo144715;rank=4 scaffold_248 . exon 6191 7100 . + . ID=Physo144715.4;Parent=Physo144715;constitutive=1;ensembl_phase=2;rank=4 scaffold_248 . repeat_region 10827 10859 . ? . description=trf scaffold_248 ensembl protein_coding_gene 10083 17963 . + . ID=Physo144717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2480004;logic_name=jgi_physo1_1 scaffold_248 ensembl transcript 10083 17963 . + . ID=Physo144717;Parent=Physo144717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_248 . CDS 10083 10183 . + 0 ID=Physo144717;Parent=Physo144717;rank=1 scaffold_248 . exon 10083 10183 . + . ID=Physo144717.1;Parent=Physo144717;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_248 . CDS 10209 10577 . + 0 ID=Physo144717;Parent=Physo144717;rank=2 scaffold_248 . exon 10209 10577 . + . ID=Physo144717.2;Parent=Physo144717;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_248 . CDS 11096 11223 . + 0 ID=Physo144717;Parent=Physo144717;rank=3 scaffold_248 . exon 11096 11223 . + . ID=Physo144717.3;Parent=Physo144717;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_248 . CDS 11252 11481 . + 0 ID=Physo144717;Parent=Physo144717;rank=4 scaffold_248 . exon 11252 11481 . + . ID=Physo144717.4;Parent=Physo144717;constitutive=1;ensembl_phase=1;rank=4 scaffold_248 . CDS 11581 11671 . + 0 ID=Physo144717;Parent=Physo144717;rank=5 scaffold_248 . exon 11581 11671 . + . ID=Physo144717.5;Parent=Physo144717;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_248 . CDS 11722 12013 . + 0 ID=Physo144717;Parent=Physo144717;rank=6 scaffold_248 . exon 11722 12013 . + . ID=Physo144717.6;Parent=Physo144717;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_248 . CDS 12127 12185 . + 0 ID=Physo144717;Parent=Physo144717;rank=7 scaffold_248 . exon 12127 12185 . + . ID=Physo144717.7;Parent=Physo144717;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_248 . CDS 12573 12781 . + 0 ID=Physo144717;Parent=Physo144717;rank=8 scaffold_248 . exon 12573 12781 . + . ID=Physo144717.8;Parent=Physo144717;constitutive=1;ensembl_phase=1;rank=8 scaffold_248 . CDS 12925 13077 . + 0 ID=Physo144717;Parent=Physo144717;rank=9 scaffold_248 . exon 12925 13077 . + . ID=Physo144717.9;Parent=Physo144717;constitutive=1;rank=9 scaffold_248 . CDS 13098 13263 . + 0 ID=Physo144717;Parent=Physo144717;rank=10 scaffold_248 . exon 13098 13263 . + . ID=Physo144717.10;Parent=Physo144717;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_248 . CDS 13481 13950 . + 0 ID=Physo144717;Parent=Physo144717;rank=11 scaffold_248 . exon 13481 13950 . + . ID=Physo144717.11;Parent=Physo144717;constitutive=1;ensembl_phase=1;rank=11 scaffold_248 . CDS 14017 14966 . + 0 ID=Physo144717;Parent=Physo144717;rank=12 scaffold_248 . exon 14017 14966 . + . ID=Physo144717.12;Parent=Physo144717;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_248 . CDS 15179 15425 . + 0 ID=Physo144717;Parent=Physo144717;rank=13 scaffold_248 . exon 15179 15425 . + . ID=Physo144717.13;Parent=Physo144717;constitutive=1;ensembl_phase=2;rank=13 scaffold_248 . CDS 15506 16056 . + 0 ID=Physo144717;Parent=Physo144717;rank=14 scaffold_248 . exon 15506 16056 . + . ID=Physo144717.14;Parent=Physo144717;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_248 . CDS 16140 17204 . + 0 ID=Physo144717;Parent=Physo144717;rank=15 scaffold_248 . exon 16140 17204 . + . ID=Physo144717.15;Parent=Physo144717;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=15 scaffold_248 . CDS 17255 17501 . + 0 ID=Physo144717;Parent=Physo144717;rank=16 scaffold_248 . exon 17255 17501 . + . ID=Physo144717.16;Parent=Physo144717;constitutive=1;ensembl_phase=2;rank=16 scaffold_248 . CDS 17542 17747 . + 0 ID=Physo144717;Parent=Physo144717;rank=17 scaffold_248 . exon 17542 17747 . + . ID=Physo144717.17;Parent=Physo144717;constitutive=1;ensembl_end_phase=2;rank=17 scaffold_248 . CDS 17768 17963 . + 0 ID=Physo144717;Parent=Physo144717;rank=18 scaffold_248 . exon 17768 17963 . + . ID=Physo144717.18;Parent=Physo144717;constitutive=1;ensembl_phase=2;rank=18 scaffold_248 . repeat_region 20811 21351 . ? . description=dust scaffold_248 . repeat_region 21478 21486 . ? . description=dust scaffold_248 . repeat_region 21665 21674 . ? . description=dust scaffold_248 . repeat_region 22283 25809 . ? . description=dust scaffold_248 . repeat_region 27180 27190 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_245 1 28869 scaffold_245 . biological_region 450 453 0.999 + . logic_name=eponine scaffold_245 . biological_region 694 696 0.999 + . logic_name=eponine scaffold_245 . repeat_region 877 896 . ? . description=trf scaffold_245 . biological_region 1542 1544 0.999 + . logic_name=eponine scaffold_245 . biological_region 1662 1664 0.999 + . logic_name=eponine scaffold_245 . biological_region 2468 2472 0.999 - . logic_name=eponine scaffold_245 . biological_region 2528 2529 0.999 - . logic_name=eponine scaffold_245 . biological_region 3915 3917 0.999 - . logic_name=eponine scaffold_245 . biological_region 5512 5512 0.999 + . logic_name=eponine scaffold_245 . repeat_region 7505 7515 . ? . description=dust scaffold_245 . biological_region 7954 7957 0.999 - . logic_name=eponine scaffold_245 ensembl protein_coding_gene 2342 6418 . + . ID=Physo144695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2450001;logic_name=jgi_physo1_1 scaffold_245 ensembl transcript 2342 6418 . + . ID=Physo144695;Parent=Physo144695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_245 . CDS 2342 6415 . + 0 ID=Physo144695;Parent=Physo144695;rank=1 scaffold_245 . exon 2342 6418 . + . ID=Physo144695.1;Parent=Physo144695;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_245 ensembl protein_coding_gene 9900 10945 . - . ID=Physo144696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2450002;logic_name=jgi_physo1_1 scaffold_245 ensembl transcript 9900 10945 . - . ID=Physo144696;Parent=Physo144696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_245 . CDS 9900 10931 . - 0 ID=Physo144696;Parent=Physo144696;rank=1 scaffold_245 . exon 9900 10945 . - . ID=Physo144696.1;Parent=Physo144696;constitutive=1;ensembl_phase=-1;rank=1 scaffold_245 ensembl protein_coding_gene 14605 18649 . + . ID=Physo144697;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2450003;logic_name=jgi_physo1_1 scaffold_245 ensembl transcript 14605 18649 . + . ID=Physo144697;Parent=Physo144697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_245 . CDS 14605 18587 . + 0 ID=Physo144697;Parent=Physo144697;rank=1 scaffold_245 . exon 14605 18587 . + . ID=Physo144697.1;Parent=Physo144697;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_245 . CDS 18634 18649 . + 0 ID=Physo144697;Parent=Physo144697;rank=2 scaffold_245 . exon 18634 18649 . + . ID=Physo144697.2;Parent=Physo144697;constitutive=1;ensembl_phase=2;rank=2 scaffold_245 ensembl protein_coding_gene 18849 19924 . - . ID=Physo144698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2450004;logic_name=jgi_physo1_1 scaffold_245 ensembl transcript 18849 19924 . - . ID=Physo144698;Parent=Physo144698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_245 . CDS 18849 19019 . - 0 ID=Physo144698;Parent=Physo144698;rank=3 scaffold_245 . exon 18849 19019 . - . ID=Physo144698.3;Parent=Physo144698;constitutive=1;rank=3 scaffold_245 . CDS 19108 19342 . - 0 ID=Physo144698;Parent=Physo144698;rank=2 scaffold_245 . exon 19108 19342 . - . ID=Physo144698.2;Parent=Physo144698;constitutive=1;ensembl_phase=2;rank=2 scaffold_245 . CDS 19419 19924 . - 0 ID=Physo144698;Parent=Physo144698;rank=1 scaffold_245 . biological_region 19623 19625 0.999 + . logic_name=eponine scaffold_245 . repeat_region 19662 19688 . ? . description=trf scaffold_245 . biological_region 19712 19713 0.999 - . logic_name=eponine scaffold_245 . repeat_region 22583 22656 . ? . description=trf scaffold_245 . repeat_region 22669 22752 . ? . description=trf scaffold_245 . repeat_region 23487 23518 . ? . description=trf scaffold_245 . repeat_region 23648 23667 . ? . description=trf scaffold_245 . repeat_region 25820 25827 . ? . description=dust scaffold_245 . repeat_region 27540 27547 . ? . description=dust scaffold_245 . exon 19419 19924 . - . ID=Physo144698.1;Parent=Physo144698;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_245 ensembl protein_coding_gene 20344 22917 . - . ID=Physo144699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2450005;logic_name=jgi_physo1_1 scaffold_245 ensembl transcript 20344 22917 . - . ID=Physo144699;Parent=Physo144699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_245 . CDS 20344 20538 . - 0 ID=Physo144699;Parent=Physo144699;rank=4 scaffold_245 . exon 20344 20538 . - . ID=Physo144699.4;Parent=Physo144699;constitutive=1;rank=4 scaffold_245 . CDS 20580 21490 . - 0 ID=Physo144699;Parent=Physo144699;rank=3 scaffold_245 . exon 20580 21490 . - . ID=Physo144699.3;Parent=Physo144699;constitutive=1;ensembl_phase=1;rank=3 scaffold_245 . CDS 21526 21833 . - 0 ID=Physo144699;Parent=Physo144699;rank=2 scaffold_245 . exon 21526 21833 . - . ID=Physo144699.2;Parent=Physo144699;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_245 . CDS 21854 22917 . - 0 ID=Physo144699;Parent=Physo144699;rank=1 scaffold_245 . exon 21854 22917 . - . ID=Physo144699.1;Parent=Physo144699;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_244 1 29074 scaffold_244 . biological_region 7463 7466 0.999 + . logic_name=eponine scaffold_244 . biological_region 7487 7487 0.999 + . logic_name=eponine scaffold_244 ensembl protein_coding_gene 3491 4584 . - . ID=Physo144689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2440001;logic_name=jgi_physo1_1 scaffold_244 ensembl transcript 3491 4584 . - . ID=Physo144689;Parent=Physo144689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_244 . CDS 3491 3499 . - 0 ID=Physo144689;Parent=Physo144689;rank=2 scaffold_244 . exon 3491 3499 . - . ID=Physo144689.2;Parent=Physo144689;constitutive=1;rank=2 scaffold_244 . CDS 3625 4584 . - 0 ID=Physo144689;Parent=Physo144689;rank=1 scaffold_244 . exon 3625 4584 . - . ID=Physo144689.1;Parent=Physo144689;constitutive=1;rank=1 scaffold_244 ensembl protein_coding_gene 5548 6748 . - . ID=Physo144690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2440002;logic_name=jgi_physo1_1 scaffold_244 ensembl transcript 5548 6748 . - . ID=Physo144690;Parent=Physo144690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_244 . CDS 5548 6058 . - 0 ID=Physo144690;Parent=Physo144690;rank=2 scaffold_244 . exon 5548 6058 . - . ID=Physo144690.2;Parent=Physo144690;constitutive=1;ensembl_phase=2;rank=2 scaffold_244 . CDS 6219 6748 . - 0 ID=Physo144690;Parent=Physo144690;rank=1 scaffold_244 . exon 6219 6748 . - . ID=Physo144690.1;Parent=Physo144690;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_244 ensembl protein_coding_gene 7196 7627 . + . ID=Physo144691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2440003;logic_name=jgi_physo1_1 scaffold_244 ensembl transcript 7196 7627 . + . ID=Physo144691;Parent=Physo144691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_244 . CDS 7196 7627 . + 0 ID=Physo144691;Parent=Physo144691;rank=1 scaffold_244 . exon 7196 7627 . + . ID=Physo144691.1;Parent=Physo144691;constitutive=1;rank=1 scaffold_244 ensembl protein_coding_gene 12918 15576 . - . ID=Physo144692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2440004;logic_name=jgi_physo1_1 scaffold_244 ensembl transcript 12918 15576 . - . ID=Physo144692;Parent=Physo144692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_244 . CDS 12918 12934 . - 0 ID=Physo144692;Parent=Physo144692;rank=5 scaffold_244 . exon 12918 12934 . - . ID=Physo144692.5;Parent=Physo144692;constitutive=1;ensembl_phase=1;rank=5 scaffold_244 . CDS 13012 13119 . - 0 ID=Physo144692;Parent=Physo144692;rank=4 scaffold_244 . exon 13012 13119 . - . ID=Physo144692.4;Parent=Physo144692;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_244 . CDS 13384 15212 . - 0 ID=Physo144692;Parent=Physo144692;rank=3 scaffold_244 . exon 13384 15212 . - . ID=Physo144692.3;Parent=Physo144692;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_244 . CDS 15311 15343 . - 0 ID=Physo144692;Parent=Physo144692;rank=2 scaffold_244 . exon 15311 15343 . - . ID=Physo144692.2;Parent=Physo144692;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_244 . CDS 15476 15576 . - 0 ID=Physo144692;Parent=Physo144692;rank=1 scaffold_244 . exon 15476 15576 . - . ID=Physo144692.1;Parent=Physo144692;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_244 . biological_region 21181 21184 0.999 + . logic_name=eponine scaffold_244 . biological_region 21200 21201 0.999 + . logic_name=eponine scaffold_244 . biological_region 21298 21299 0.999 - . logic_name=eponine scaffold_244 . biological_region 21986 21987 0.999 + . logic_name=eponine scaffold_244 . biological_region 22089 22096 0.999 - . logic_name=eponine scaffold_244 . biological_region 22365 22366 0.999 + . logic_name=eponine scaffold_244 . repeat_region 24356 24363 . ? . description=dust scaffold_244 . repeat_region 25089 25096 . ? . description=dust scaffold_244 . repeat_region 26010 26018 . ? . description=dust scaffold_244 . repeat_region 26698 26705 . ? . description=dust scaffold_244 . biological_region 28189 28191 0.999 - . logic_name=eponine scaffold_244 ensembl protein_coding_gene 21199 23939 . + . ID=Physo144693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2440005;logic_name=jgi_physo1_1 scaffold_244 ensembl transcript 21199 23939 . + . ID=Physo144693;Parent=Physo144693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_244 . CDS 21199 21299 . + 0 ID=Physo144693;Parent=Physo144693;rank=1 scaffold_244 . exon 21199 21299 . + . ID=Physo144693.1;Parent=Physo144693;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_244 . CDS 21432 21464 . + 0 ID=Physo144693;Parent=Physo144693;rank=2 scaffold_244 . exon 21432 21464 . + . ID=Physo144693.2;Parent=Physo144693;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_244 . CDS 21563 23391 . + 0 ID=Physo144693;Parent=Physo144693;rank=3 scaffold_244 . exon 21563 23391 . + . ID=Physo144693.3;Parent=Physo144693;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_244 . CDS 23656 23763 . + 0 ID=Physo144693;Parent=Physo144693;rank=4 scaffold_244 . exon 23656 23763 . + . ID=Physo144693.4;Parent=Physo144693;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_244 . CDS 23932 23939 . + 0 ID=Physo144693;Parent=Physo144693;rank=5 scaffold_244 . exon 23932 23939 . + . ID=Physo144693.5;Parent=Physo144693;constitutive=1;ensembl_phase=1;rank=5 scaffold_244 ensembl protein_coding_gene 27487 29037 . + . ID=Physo144694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2440006;logic_name=jgi_physo1_1 scaffold_244 ensembl transcript 27487 29037 . + . ID=Physo144694;Parent=Physo144694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_244 . CDS 27487 27578 . + 0 ID=Physo144694;Parent=Physo144694;rank=1 scaffold_244 . exon 27487 27578 . + . ID=Physo144694.1;Parent=Physo144694;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_244 . CDS 27654 29037 . + 0 ID=Physo144694;Parent=Physo144694;rank=2 scaffold_244 . exon 27654 29037 . + . ID=Physo144694.2;Parent=Physo144694;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_243 1 29485 scaffold_243 . biological_region 211 216 0.999 + . logic_name=eponine scaffold_243 . biological_region 238 242 0.999 + . logic_name=eponine scaffold_243 . repeat_region 854 903 . ? . description=dust scaffold_243 . repeat_region 2144 2341 . ? . description=dust scaffold_243 . biological_region 2599 2602 0.999 + . logic_name=eponine scaffold_243 . biological_region 2606 2608 0.999 - . logic_name=eponine scaffold_243 . biological_region 2623 2624 0.999 - . logic_name=eponine scaffold_243 . biological_region 2644 2649 0.999 + . logic_name=eponine scaffold_243 . biological_region 2691 2694 0.999 - . logic_name=eponine scaffold_243 . biological_region 2738 2741 0.999 - . logic_name=eponine scaffold_243 . biological_region 2921 2922 0.999 - . logic_name=eponine scaffold_243 . repeat_region 3359 3408 . ? . description=dust scaffold_243 . biological_region 3750 3754 0.999 - . logic_name=eponine scaffold_243 . biological_region 4230 4233 0.999 + . logic_name=eponine scaffold_243 . biological_region 4420 4423 0.999 - . logic_name=eponine scaffold_243 . repeat_region 4693 7530 . ? . description=dust scaffold_243 . biological_region 8380 8382 0.999 + . logic_name=eponine scaffold_243 . repeat_region 9664 10113 . ? . description=dust scaffold_243 ensembl protein_coding_gene 33 2044 . - . ID=Physo144683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2430001;logic_name=jgi_physo1_1 scaffold_243 ensembl transcript 33 2044 . - . ID=Physo144683;Parent=Physo144683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_243 . exon 33 701 . - . ID=Physo144683.4;Parent=Physo144683;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_243 . CDS 35 701 . - 0 ID=Physo144683;Parent=Physo144683;rank=4 scaffold_243 . CDS 1032 1402 . - 0 ID=Physo144683;Parent=Physo144683;rank=3 scaffold_243 . exon 1032 1402 . - . ID=Physo144683.3;Parent=Physo144683;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_243 . CDS 1434 1443 . - 0 ID=Physo144683;Parent=Physo144683;rank=2 scaffold_243 . exon 1434 1443 . - . ID=Physo144683.2;Parent=Physo144683;constitutive=1;ensembl_phase=2;rank=2 scaffold_243 . CDS 1491 2044 . - 0 ID=Physo144683;Parent=Physo144683;rank=1 scaffold_243 . exon 1491 2044 . - . ID=Physo144683.1;Parent=Physo144683;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_243 ensembl protein_coding_gene 2427 9634 . - . ID=Physo144684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2430002;logic_name=jgi_physo1_1 scaffold_243 ensembl transcript 2427 9634 . - . ID=Physo144684;Parent=Physo144684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_243 . CDS 2427 3276 . - 0 ID=Physo144684;Parent=Physo144684;rank=8 scaffold_243 . exon 2427 3276 . - . ID=Physo144684.8;Parent=Physo144684;constitutive=1;ensembl_phase=2;rank=8 scaffold_243 . CDS 3412 3980 . - 0 ID=Physo144684;Parent=Physo144684;rank=7 scaffold_243 . exon 3412 3980 . - . ID=Physo144684.7;Parent=Physo144684;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_243 . CDS 4110 4617 . - 0 ID=Physo144684;Parent=Physo144684;rank=6 scaffold_243 . exon 4110 4617 . - . ID=Physo144684.6;Parent=Physo144684;constitutive=1;ensembl_phase=2;rank=6 scaffold_243 . CDS 7539 7849 . - 0 ID=Physo144684;Parent=Physo144684;rank=5 scaffold_243 . exon 7539 7849 . - . ID=Physo144684.5;Parent=Physo144684;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_243 . CDS 7869 7875 . - 0 ID=Physo144684;Parent=Physo144684;rank=4 scaffold_243 . exon 7869 7875 . - . ID=Physo144684.4;Parent=Physo144684;constitutive=1;ensembl_phase=2;rank=4 scaffold_243 . CDS 7917 8118 . - 0 ID=Physo144684;Parent=Physo144684;rank=3 scaffold_243 . exon 7917 8118 . - . ID=Physo144684.3;Parent=Physo144684;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_243 . CDS 8194 9064 . - 0 ID=Physo144684;Parent=Physo144684;rank=2 scaffold_243 . exon 8194 9064 . - . ID=Physo144684.2;Parent=Physo144684;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_243 . CDS 9089 9634 . - 0 ID=Physo144684;Parent=Physo144684;rank=1 scaffold_243 . exon 9089 9634 . - . ID=Physo144684.1;Parent=Physo144684;constitutive=1;rank=1 scaffold_243 . repeat_region 10882 10932 . ? . description=trf scaffold_243 . repeat_region 10882 10934 . ? . description=trf scaffold_243 . repeat_region 10974 11004 . ? . description=trf scaffold_243 . repeat_region 12596 12646 . ? . description=trf scaffold_243 . repeat_region 12596 12648 . ? . description=trf scaffold_243 . repeat_region 12688 12718 . ? . description=trf scaffold_243 . repeat_region 16569 16619 . ? . description=trf scaffold_243 . repeat_region 16569 16621 . ? . description=trf scaffold_243 . repeat_region 16661 16691 . ? . description=trf scaffold_243 . repeat_region 16693 16733 . ? . description=trf scaffold_243 . repeat_region 18063 18187 . + . description=GypsyPi-1c_I-int scaffold_243 ensembl protein_coding_gene 12807 16422 . - . ID=Physo144685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2430003;logic_name=jgi_physo1_1 scaffold_243 ensembl transcript 12807 16422 . - . ID=Physo144685;Parent=Physo144685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_243 . CDS 12807 13430 . - 0 ID=Physo144685;Parent=Physo144685;rank=4 scaffold_243 . exon 12807 13430 . - . ID=Physo144685.4;Parent=Physo144685;constitutive=1;rank=4 scaffold_243 . CDS 13486 13908 . - 0 ID=Physo144685;Parent=Physo144685;rank=3 scaffold_243 . exon 13486 13908 . - . ID=Physo144685.3;Parent=Physo144685;constitutive=1;rank=3 scaffold_243 . CDS 13974 15186 . - 0 ID=Physo144685;Parent=Physo144685;rank=2 scaffold_243 . exon 13974 15186 . - . ID=Physo144685.2;Parent=Physo144685;constitutive=1;ensembl_phase=2;rank=2 scaffold_243 . CDS 15227 16422 . - 0 ID=Physo144685;Parent=Physo144685;rank=1 scaffold_243 . exon 15227 16422 . - . ID=Physo144685.1;Parent=Physo144685;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_243 ensembl protein_coding_gene 17089 19342 . + . ID=Physo144686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2430004;logic_name=jgi_physo1_1 scaffold_243 ensembl transcript 17089 19342 . + . ID=Physo144686;Parent=Physo144686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_243 . CDS 17089 17753 . + 0 ID=Physo144686;Parent=Physo144686;rank=1 scaffold_243 . exon 17089 17753 . + . ID=Physo144686.1;Parent=Physo144686;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_243 . CDS 17861 18057 . + 0 ID=Physo144686;Parent=Physo144686;rank=2 scaffold_243 . exon 17861 18057 . + . ID=Physo144686.2;Parent=Physo144686;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_243 . CDS 18340 18544 . + 0 ID=Physo144686;Parent=Physo144686;rank=3 scaffold_243 . exon 18340 18544 . + . ID=Physo144686.3;Parent=Physo144686;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_243 . CDS 18565 18661 . + 0 ID=Physo144686;Parent=Physo144686;rank=4 scaffold_243 . exon 18565 18661 . + . ID=Physo144686.4;Parent=Physo144686;constitutive=1;ensembl_phase=2;rank=4 scaffold_243 . CDS 18683 19342 . + 0 ID=Physo144686;Parent=Physo144686;rank=5 scaffold_243 . exon 18683 19342 . + . ID=Physo144686.5;Parent=Physo144686;constitutive=1;rank=5 scaffold_243 ensembl protein_coding_gene 19619 21353 . - . ID=Physo144687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2430005;logic_name=jgi_physo1_1 scaffold_243 ensembl transcript 19619 21353 . - . ID=Physo144687;Parent=Physo144687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_243 . CDS 19619 19837 . - 0 ID=Physo144687;Parent=Physo144687;rank=3 scaffold_243 . exon 19619 19837 . - . ID=Physo144687.3;Parent=Physo144687;constitutive=1;rank=3 scaffold_243 . CDS 20237 20833 . - 0 ID=Physo144687;Parent=Physo144687;rank=2 scaffold_243 . CDS 20877 21353 . - 0 ID=Physo144687;Parent=Physo144687;rank=1 scaffold_243 . repeat_region 19885 20145 . ? . description=dust scaffold_243 . biological_region 20981 20983 0.999 + . logic_name=eponine scaffold_243 . repeat_region 21561 23279 . ? . description=dust scaffold_243 . biological_region 26185 26187 0.999 - . logic_name=eponine scaffold_243 . repeat_region 26962 28242 . ? . description=dust scaffold_243 . exon 20237 20833 . - . ID=Physo144687.2;Parent=Physo144687;constitutive=1;rank=2 scaffold_243 . exon 20877 21353 . - . ID=Physo144687.1;Parent=Physo144687;constitutive=1;rank=1 scaffold_243 ensembl protein_coding_gene 23840 29251 . + . ID=Physo144688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2430006;logic_name=jgi_physo1_1 scaffold_243 ensembl transcript 23840 29251 . + . ID=Physo144688;Parent=Physo144688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_243 . CDS 23840 25390 . + 0 ID=Physo144688;Parent=Physo144688;rank=1 scaffold_243 . exon 23840 25390 . + . ID=Physo144688.1;Parent=Physo144688;constitutive=1;rank=1 scaffold_243 . CDS 25484 26209 . + 0 ID=Physo144688;Parent=Physo144688;rank=2 scaffold_243 . exon 25484 26209 . + . ID=Physo144688.2;Parent=Physo144688;constitutive=1;rank=2 scaffold_243 . CDS 26292 26930 . + 0 ID=Physo144688;Parent=Physo144688;rank=3 scaffold_243 . exon 26292 26930 . + . ID=Physo144688.3;Parent=Physo144688;constitutive=1;rank=3 scaffold_243 . CDS 28289 28645 . + 0 ID=Physo144688;Parent=Physo144688;rank=4 scaffold_243 . exon 28289 28645 . + . ID=Physo144688.4;Parent=Physo144688;constitutive=1;rank=4 scaffold_243 . CDS 28822 28900 . + 0 ID=Physo144688;Parent=Physo144688;rank=5 scaffold_243 . exon 28822 28900 . + . ID=Physo144688.5;Parent=Physo144688;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_243 . CDS 29046 29251 . + 0 ID=Physo144688;Parent=Physo144688;rank=6 scaffold_243 . exon 29046 29251 . + . ID=Physo144688.6;Parent=Physo144688;constitutive=1;ensembl_phase=1;rank=6 ##gff-version 3 ##sequence-region scaffold_240 1 30485 scaffold_240 . biological_region 566 568 0.999 - . logic_name=eponine scaffold_240 . repeat_region 3485 3494 . ? . description=dust scaffold_240 . biological_region 3661 3667 0.999 + . logic_name=eponine scaffold_240 . biological_region 3698 3700 0.999 + . logic_name=eponine scaffold_240 . biological_region 3759 3764 0.999 + . logic_name=eponine scaffold_240 . biological_region 3794 3798 0.999 - . logic_name=eponine scaffold_240 . biological_region 3802 3805 0.999 + . logic_name=eponine scaffold_240 . biological_region 6159 6163 0.999 + . logic_name=eponine scaffold_240 . repeat_region 6742 6792 . ? . description=trf scaffold_240 . repeat_region 6742 6794 . ? . description=trf scaffold_240 . repeat_region 6834 6864 . ? . description=trf scaffold_240 . repeat_region 7568 7577 . ? . description=dust scaffold_240 ensembl protein_coding_gene 48 2273 . + . ID=Physo144671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2400001;logic_name=jgi_physo1_1 scaffold_240 ensembl transcript 48 2273 . + . ID=Physo144671;Parent=Physo144671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_240 . CDS 48 2273 . + 0 ID=Physo144671;Parent=Physo144671;rank=1 scaffold_240 . exon 48 2273 . + . ID=Physo144671.1;Parent=Physo144671;constitutive=1;rank=1 scaffold_240 ensembl protein_coding_gene 4235 4738 . - . ID=Physo144672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2400002;logic_name=jgi_physo1_1 scaffold_240 ensembl transcript 4235 4738 . - . ID=Physo144672;Parent=Physo144672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_240 . CDS 4235 4738 . - 0 ID=Physo144672;Parent=Physo144672;rank=1 scaffold_240 . exon 4235 4738 . - . ID=Physo144672.1;Parent=Physo144672;constitutive=1;rank=1 scaffold_240 ensembl protein_coding_gene 7618 11532 . - . ID=Physo144673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2400003;logic_name=jgi_physo1_1 scaffold_240 ensembl transcript 7618 11532 . - . ID=Physo144673;Parent=Physo144673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_240 . CDS 7618 8540 . - 0 ID=Physo144673;Parent=Physo144673;rank=4 scaffold_240 . exon 7618 8540 . - . ID=Physo144673.4;Parent=Physo144673;constitutive=1;ensembl_phase=1;rank=4 scaffold_240 . CDS 8768 8799 . - 0 ID=Physo144673;Parent=Physo144673;rank=3 scaffold_240 . CDS 9095 10265 . - 0 ID=Physo144673;Parent=Physo144673;rank=2 scaffold_240 . CDS 11040 11532 . - 0 ID=Physo144673;Parent=Physo144673;rank=1 scaffold_240 . exon 8768 8799 . - . ID=Physo144673.3;Parent=Physo144673;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_240 . exon 9095 10265 . - . ID=Physo144673.2;Parent=Physo144673;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_240 . exon 11040 11532 . - . ID=Physo144673.1;Parent=Physo144673;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_240 ensembl protein_coding_gene 11904 14462 . - . ID=Physo144674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2400004;logic_name=jgi_physo1_1 scaffold_240 ensembl transcript 11904 14462 . - . ID=Physo144674;Parent=Physo144674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_240 . CDS 11904 12914 . - 0 ID=Physo144674;Parent=Physo144674;rank=3 scaffold_240 . exon 11904 12914 . - . ID=Physo144674.3;Parent=Physo144674;constitutive=1;rank=3 scaffold_240 . CDS 12945 13218 . - 0 ID=Physo144674;Parent=Physo144674;rank=2 scaffold_240 . exon 12945 13218 . - . ID=Physo144674.2;Parent=Physo144674;constitutive=1;ensembl_phase=2;rank=2 scaffold_240 . CDS 13309 14462 . - 0 ID=Physo144674;Parent=Physo144674;rank=1 scaffold_240 . exon 13309 14462 . - . ID=Physo144674.1;Parent=Physo144674;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_240 . repeat_region 15303 15393 . ? . description=trf scaffold_240 . biological_region 17001 17001 0.999 + . logic_name=eponine scaffold_240 . biological_region 17770 17772 0.999 - . logic_name=eponine scaffold_240 . biological_region 17822 17827 0.999 + . logic_name=eponine scaffold_240 . repeat_region 18962 19043 . ? . description=trf scaffold_240 . biological_region 19362 19367 0.999 + . logic_name=eponine scaffold_240 . repeat_region 19959 20237 . - . description=GypsyPi-1c_I-int scaffold_240 . repeat_region 20456 21212 . - . description=GypsyPi-1c_I-int scaffold_240 . repeat_region 21219 21544 . ? . description=dust scaffold_240 . repeat_region 21550 22734 . - . description=GypsyPi-1c_I-int scaffold_240 ensembl protein_coding_gene 15787 23105 . - . ID=Physo144675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2400005;logic_name=jgi_physo1_1 scaffold_240 ensembl transcript 15787 23105 . - . ID=Physo144675;Parent=Physo144675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_240 . CDS 15787 17313 . - 0 ID=Physo144675;Parent=Physo144675;rank=9 scaffold_240 . exon 15787 17313 . - . ID=Physo144675.9;Parent=Physo144675;constitutive=1;rank=9 scaffold_240 . CDS 17374 17951 . - 0 ID=Physo144675;Parent=Physo144675;rank=8 scaffold_240 . exon 17374 17951 . - . ID=Physo144675.8;Parent=Physo144675;constitutive=1;ensembl_phase=1;rank=8 scaffold_240 . CDS 18003 18693 . - 0 ID=Physo144675;Parent=Physo144675;rank=7 scaffold_240 . exon 18003 18693 . - . ID=Physo144675.7;Parent=Physo144675;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_240 . CDS 18883 19033 . - 0 ID=Physo144675;Parent=Physo144675;rank=6 scaffold_240 . exon 18883 19033 . - . ID=Physo144675.6;Parent=Physo144675;constitutive=1;ensembl_phase=2;rank=6 scaffold_240 . CDS 19363 19434 . - 0 ID=Physo144675;Parent=Physo144675;rank=5 scaffold_240 . exon 19363 19434 . - . ID=Physo144675.5;Parent=Physo144675;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_240 . CDS 19717 19952 . - 0 ID=Physo144675;Parent=Physo144675;rank=4 scaffold_240 . exon 19717 19952 . - . ID=Physo144675.4;Parent=Physo144675;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_240 . CDS 20091 20104 . - 0 ID=Physo144675;Parent=Physo144675;rank=3 scaffold_240 . exon 20091 20104 . - . ID=Physo144675.3;Parent=Physo144675;constitutive=1;ensembl_phase=1;rank=3 scaffold_240 . CDS 20150 21177 . - 0 ID=Physo144675;Parent=Physo144675;rank=2 scaffold_240 . exon 20150 21177 . - . ID=Physo144675.2;Parent=Physo144675;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_240 . CDS 21586 23105 . - 0 ID=Physo144675;Parent=Physo144675;rank=1 scaffold_240 . exon 21586 23105 . - . ID=Physo144675.1;Parent=Physo144675;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_240 ensembl protein_coding_gene 29392 29583 . + . ID=Physo125292;biotype=protein_coding;external_name=estExt_Genewise1.C_2400004;logic_name=jgi_physo1_1 scaffold_240 ensembl transcript 29392 29583 . + . ID=Physo125292;Parent=Physo125292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_240 . CDS 29392 29583 . + 0 ID=Physo125292;Parent=Physo125292;rank=1 scaffold_240 . exon 29392 29583 . + . ID=Physo125292.1;Parent=Physo125292;constitutive=1;rank=1 scaffold_240 ensembl protein_coding_gene 29839 30483 . + . ID=Physo125294;biotype=protein_coding;external_name=estExt_Genewise1.C_2400006;logic_name=jgi_physo1_1 scaffold_240 ensembl transcript 29839 30483 . + . ID=Physo125294;Parent=Physo125294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_240 . exon 29839 30483 . + . ID=Physo125294.1;Parent=Physo125294;constitutive=1;ensembl_phase=-1;rank=1 scaffold_240 . CDS 29878 30483 . + 0 ID=Physo125294;Parent=Physo125294;rank=1 ##gff-version 3 ##sequence-region scaffold_242 1 31232 scaffold_242 . repeat_region 1214 2664 . ? . description=dust scaffold_242 . biological_region 3513 3518 0.999 + . logic_name=eponine scaffold_242 . biological_region 3832 3834 0.999 + . logic_name=eponine scaffold_242 . biological_region 3858 3860 0.999 - . logic_name=eponine scaffold_242 . biological_region 4068 4068 0.999 + . logic_name=eponine scaffold_242 . repeat_region 4200 4268 . + . description=GypsyPi-1c_I-int scaffold_242 . repeat_region 4524 4769 . ? . description=trf scaffold_242 . repeat_region 4524 4769 . ? . description=trf scaffold_242 . repeat_region 4534 4800 . ? . description=trf scaffold_242 . biological_region 4535 4538 0.999 - . logic_name=eponine scaffold_242 . biological_region 4895 4899 0.999 - . logic_name=eponine scaffold_242 . biological_region 4979 4982 0.999 + . logic_name=eponine scaffold_242 . biological_region 5307 5310 0.999 - . logic_name=eponine scaffold_242 . repeat_region 5349 5505 . + . description=GypsyPi-1c_I-int scaffold_242 . biological_region 5473 5478 0.999 - . logic_name=eponine scaffold_242 . repeat_region 5563 5723 . ? . description=dust scaffold_242 . repeat_region 5724 6662 . + . description=GypsyPi-1c_I-int scaffold_242 . biological_region 6832 6836 0.999 - . logic_name=eponine scaffold_242 . repeat_region 7009 7487 . + . description=GypsyPi-1c_I-int scaffold_242 . biological_region 7155 7156 0.999 + . logic_name=eponine scaffold_242 . repeat_region 7490 7539 . ? . description=dust scaffold_242 . repeat_region 7540 8874 . + . description=GypsyPi-1c_I-int scaffold_242 . repeat_region 15667 15716 . ? . description=dust scaffold_242 . repeat_region 17509 17571 . ? . description=trf scaffold_242 . repeat_region 19585 19624 . ? . description=trf scaffold_242 . biological_region 19634 19636 0.999 - . logic_name=eponine scaffold_242 . repeat_region 21910 23306 . + . description=Polinton-1_PI scaffold_242 . repeat_region 21938 21951 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_241 1 32258 scaffold_241 . repeat_region 229 777 . + . description=GypsyPi-1c_I-int scaffold_241 . repeat_region 1422 4310 . + . description=GypsyPi-1c_I-int scaffold_241 . biological_region 3747 3753 0.999 + . logic_name=eponine scaffold_241 . repeat_region 4651 4785 . + . description=GypsyPi-1c_I-int scaffold_241 . biological_region 5665 5674 0.999 + . logic_name=eponine scaffold_241 . repeat_region 7288 7340 . ? . description=trf scaffold_241 . repeat_region 7288 7340 . ? . description=dust scaffold_241 ensembl protein_coding_gene 56 3937 . + . ID=Physo144677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2410001;logic_name=jgi_physo1_1 scaffold_241 ensembl transcript 56 3937 . + . ID=Physo144677;Parent=Physo144677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_241 . CDS 56 217 . + 0 ID=Physo144677;Parent=Physo144677;rank=1 scaffold_241 . exon 56 217 . + . ID=Physo144677.1;Parent=Physo144677;constitutive=1;rank=1 scaffold_241 . CDS 483 1328 . + 0 ID=Physo144677;Parent=Physo144677;rank=2 scaffold_241 . exon 483 1328 . + . ID=Physo144677.2;Parent=Physo144677;constitutive=1;rank=2 scaffold_241 . CDS 1383 2888 . + 0 ID=Physo144677;Parent=Physo144677;rank=3 scaffold_241 . exon 1383 2888 . + . ID=Physo144677.3;Parent=Physo144677;constitutive=1;rank=3 scaffold_241 . CDS 2909 3937 . + 0 ID=Physo144677;Parent=Physo144677;rank=4 scaffold_241 . exon 2909 3937 . + . ID=Physo144677.4;Parent=Physo144677;constitutive=1;rank=4 scaffold_241 ensembl protein_coding_gene 5093 5910 . - . ID=Physo144678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2410002;logic_name=jgi_physo1_1 scaffold_241 ensembl transcript 5093 5910 . - . ID=Physo144678;Parent=Physo144678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_241 . CDS 5093 5766 . - 0 ID=Physo144678;Parent=Physo144678;rank=2 scaffold_241 . exon 5093 5766 . - . ID=Physo144678.2;Parent=Physo144678;constitutive=1;ensembl_phase=1;rank=2 scaffold_241 . CDS 5856 5910 . - 0 ID=Physo144678;Parent=Physo144678;rank=1 scaffold_241 . exon 5856 5910 . - . ID=Physo144678.1;Parent=Physo144678;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_241 ensembl protein_coding_gene 8324 8569 . - . ID=Physo125305;biotype=protein_coding;external_name=estExt_Genewise1.C_2410001;logic_name=jgi_physo1_1 scaffold_241 ensembl transcript 8324 8569 . - . ID=Physo125305;Parent=Physo125305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_241 . CDS 8324 8539 . - 0 ID=Physo125305;Parent=Physo125305;rank=1 scaffold_241 . exon 8324 8569 . - . ID=Physo125305.1;Parent=Physo125305;constitutive=1;ensembl_phase=-1;rank=1 scaffold_241 ensembl protein_coding_gene 12935 13408 . - . ID=Physo144679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2410003;logic_name=jgi_physo1_1 scaffold_241 ensembl transcript 12935 13408 . - . ID=Physo144679;Parent=Physo144679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_241 . CDS 12935 12937 . - 0 ID=Physo144679;Parent=Physo144679;rank=3 scaffold_241 . exon 12935 12937 . - . ID=Physo144679.3;Parent=Physo144679;constitutive=1;rank=3 scaffold_241 . CDS 12986 13299 . - 0 ID=Physo144679;Parent=Physo144679;rank=2 scaffold_241 . exon 12986 13299 . - . ID=Physo144679.2;Parent=Physo144679;constitutive=1;ensembl_phase=1;rank=2 scaffold_241 . CDS 13399 13408 . - 0 ID=Physo144679;Parent=Physo144679;rank=1 scaffold_241 . exon 13399 13408 . - . ID=Physo144679.1;Parent=Physo144679;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_241 ensembl protein_coding_gene 15584 17255 . + . ID=Physo144680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2410004;logic_name=jgi_physo1_1 scaffold_241 ensembl transcript 15584 17255 . + . ID=Physo144680;Parent=Physo144680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_241 . CDS 15584 16057 . + 0 ID=Physo144680;Parent=Physo144680;rank=1 scaffold_241 . exon 15584 16057 . + . ID=Physo144680.1;Parent=Physo144680;constitutive=1;rank=1 scaffold_241 . CDS 16109 17062 . + 0 ID=Physo144680;Parent=Physo144680;rank=2 scaffold_241 . exon 16109 17062 . + . ID=Physo144680.2;Parent=Physo144680;constitutive=1;rank=2 scaffold_241 . CDS 17199 17255 . + 0 ID=Physo144680;Parent=Physo144680;rank=3 scaffold_241 . biological_region 22454 22454 0.999 + . logic_name=eponine scaffold_241 . biological_region 22587 22594 0.999 - . logic_name=eponine scaffold_241 . biological_region 22625 22631 0.999 + . logic_name=eponine scaffold_241 . biological_region 22650 22654 0.999 - . logic_name=eponine scaffold_241 . biological_region 22666 22667 0.999 + . logic_name=eponine scaffold_241 . biological_region 22669 22675 0.999 - . logic_name=eponine scaffold_241 . biological_region 22691 22693 0.999 - . logic_name=eponine scaffold_241 . repeat_region 22701 22745 . ? . description=trf scaffold_241 . biological_region 23043 23043 0.999 - . logic_name=eponine scaffold_241 . biological_region 23147 23148 0.999 + . logic_name=eponine scaffold_241 . biological_region 23165 23165 0.999 - . logic_name=eponine scaffold_241 . biological_region 23447 23450 0.999 - . logic_name=eponine scaffold_241 . exon 17199 17255 . + . ID=Physo144680.3;Parent=Physo144680;constitutive=1;rank=3 scaffold_241 ensembl protein_coding_gene 22798 24670 . + . ID=Physo144681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2410005;logic_name=jgi_physo1_1 scaffold_241 ensembl transcript 22798 24670 . + . ID=Physo144681;Parent=Physo144681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_241 . CDS 22798 22806 . + 0 ID=Physo144681;Parent=Physo144681;rank=1 scaffold_241 . exon 22798 22806 . + . ID=Physo144681.1;Parent=Physo144681;constitutive=1;rank=1 scaffold_241 . CDS 23492 24670 . + 0 ID=Physo144681;Parent=Physo144681;rank=2 scaffold_241 . exon 23492 24670 . + . ID=Physo144681.2;Parent=Physo144681;constitutive=1;rank=2 scaffold_241 . repeat_region 30866 31200 . ? . description=dust scaffold_241 . repeat_region 31945 32258 . ? . description=dust scaffold_241 ensembl protein_coding_gene 26734 27828 . + . ID=Physo144682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2410006;logic_name=jgi_physo1_1 scaffold_241 ensembl transcript 26734 27828 . + . ID=Physo144682;Parent=Physo144682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_241 . CDS 26734 27828 . + 0 ID=Physo144682;Parent=Physo144682;rank=1 scaffold_241 . exon 26734 27828 . + . ID=Physo144682.1;Parent=Physo144682;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_233 1 32587 scaffold_233 . repeat_region 3261 3311 . ? . description=trf scaffold_233 . repeat_region 3261 3313 . ? . description=trf scaffold_233 . repeat_region 3353 3383 . ? . description=trf scaffold_233 . biological_region 5643 5643 0.999 - . logic_name=eponine scaffold_233 . repeat_region 5699 8452 . ? . description=dust scaffold_233 ensembl protein_coding_gene 3 699 . + . ID=Physo109667;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2330001;logic_name=jgi_physo1_1 scaffold_233 ensembl transcript 3 699 . + . ID=Physo109667;Parent=Physo109667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_233 . exon 3 699 . + . ID=Physo109667.1;Parent=Physo109667;constitutive=1;ensembl_phase=-1;rank=1 scaffold_233 . CDS 46 699 . + 0 ID=Physo109667;Parent=Physo109667;rank=1 scaffold_233 ensembl protein_coding_gene 1380 2595 . + . ID=Physo144666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2330002;logic_name=jgi_physo1_1 scaffold_233 ensembl transcript 1380 2595 . + . ID=Physo144666;Parent=Physo144666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_233 . CDS 1380 1791 . + 0 ID=Physo144666;Parent=Physo144666;rank=1 scaffold_233 . exon 1380 1791 . + . ID=Physo144666.1;Parent=Physo144666;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_233 . CDS 1834 2171 . + 0 ID=Physo144666;Parent=Physo144666;rank=2 scaffold_233 . exon 1834 2171 . + . ID=Physo144666.2;Parent=Physo144666;constitutive=1;ensembl_phase=1;rank=2 scaffold_233 . CDS 2230 2595 . + 0 ID=Physo144666;Parent=Physo144666;rank=3 scaffold_233 . exon 2230 2595 . + . ID=Physo144666.3;Parent=Physo144666;constitutive=1;rank=3 scaffold_233 ensembl protein_coding_gene 8453 8653 . + . ID=Physo125279;biotype=protein_coding;external_name=estExt_Genewise1.C_2330003;logic_name=jgi_physo1_1 scaffold_233 ensembl transcript 8453 8653 . + . ID=Physo125279;Parent=Physo125279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_233 . exon 8453 8653 . + . ID=Physo125279.1;Parent=Physo125279;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_233 . CDS 8455 8643 . + 0 ID=Physo125279;Parent=Physo125279;rank=1 scaffold_233 ensembl protein_coding_gene 10910 11347 . + . ID=Physo144667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2330003;logic_name=jgi_physo1_1 scaffold_233 ensembl transcript 10910 11347 . + . ID=Physo144667;Parent=Physo144667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_233 . CDS 10910 11347 . + 0 ID=Physo144667;Parent=Physo144667;rank=1 scaffold_233 . exon 10910 11347 . + . ID=Physo144667.1;Parent=Physo144667;constitutive=1;rank=1 scaffold_233 ensembl protein_coding_gene 15989 19909 . - . ID=Physo144668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2330004;logic_name=jgi_physo1_1 scaffold_233 ensembl transcript 15989 19909 . - . ID=Physo144668;Parent=Physo144668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_233 . CDS 15989 16285 . - 0 ID=Physo144668;Parent=Physo144668;rank=2 scaffold_233 . exon 15989 16285 . - . ID=Physo144668.2;Parent=Physo144668;constitutive=1;rank=2 scaffold_233 . CDS 16382 19909 . - 0 ID=Physo144668;Parent=Physo144668;rank=1 scaffold_233 . exon 16382 19909 . - . ID=Physo144668.1;Parent=Physo144668;constitutive=1;rank=1 scaffold_233 ensembl protein_coding_gene 23815 27972 . - . ID=Physo144669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2330005;logic_name=jgi_physo1_1 scaffold_233 ensembl transcript 23815 27972 . - . ID=Physo144669;Parent=Physo144669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_233 . CDS 23815 24255 . - 0 ID=Physo144669;Parent=Physo144669;rank=3 scaffold_233 . exon 23815 24255 . - . ID=Physo144669.3;Parent=Physo144669;constitutive=1;rank=3 scaffold_233 . CDS 25341 26186 . - 0 ID=Physo144669;Parent=Physo144669;rank=2 scaffold_233 . CDS 26302 27972 . - 0 ID=Physo144669;Parent=Physo144669;rank=1 scaffold_233 . repeat_region 24498 25307 . ? . description=dust scaffold_233 . repeat_region 26196 26245 . ? . description=dust scaffold_233 . biological_region 29956 29959 0.999 + . logic_name=eponine scaffold_233 . biological_region 29975 29977 0.999 - . logic_name=eponine scaffold_233 . biological_region 30028 30032 0.999 - . logic_name=eponine scaffold_233 . biological_region 30050 30051 0.999 - . logic_name=eponine scaffold_233 . repeat_region 32189 32224 . ? . description=trf scaffold_233 . repeat_region 32285 32337 . ? . description=trf scaffold_233 . repeat_region 32285 32337 . ? . description=trf scaffold_233 . exon 25341 26186 . - . ID=Physo144669.2;Parent=Physo144669;constitutive=1;rank=2 scaffold_233 . exon 26302 27972 . - . ID=Physo144669.1;Parent=Physo144669;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_232 1 34765 scaffold_232 . repeat_region 2 3777 . + . description=Polinton-1_PI scaffold_232 . repeat_region 3778 4691 . ? . description=dust scaffold_232 . repeat_region 4776 7387 . - . description=Polinton-1_PI scaffold_232 . repeat_region 7244 7251 . ? . description=dust scaffold_232 . repeat_region 7388 17383 . ? . description=dust scaffold_232 . repeat_region 17384 33893 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_238 1 35081 scaffold_238 . repeat_region 1 1381 . ? . description=trf scaffold_238 . repeat_region 1 1381 . ? . description=trf scaffold_238 . repeat_region 1382 17541 . ? . description=dust scaffold_238 . repeat_region 17542 34189 . ? . description=dust scaffold_238 . repeat_region 34329 34364 . ? . description=trf scaffold_238 . repeat_region 34657 35081 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_237 1 35166 scaffold_237 . repeat_region 3 1393 . - . description=Polinton-1_PI scaffold_237 . repeat_region 1394 7007 . ? . description=dust scaffold_237 . repeat_region 7008 7128 . - . description=Polinton-1_PI scaffold_237 . repeat_region 8196 8493 . - . description=Polinton-1_PI scaffold_237 . repeat_region 8546 8612 . + . description=Polinton-1_PI scaffold_237 . repeat_region 8628 8675 . + . description=Polinton-1_PI scaffold_237 . repeat_region 8705 17584 . ? . description=dust scaffold_237 ensembl protein_coding_gene 941 1252 . - . ID=Physo125288;biotype=protein_coding;external_name=estExt_Genewise1.C_2370002;logic_name=jgi_physo1_1 scaffold_237 ensembl transcript 941 1252 . - . ID=Physo125288;Parent=Physo125288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_237 . CDS 941 1129 . - 0 ID=Physo125288;Parent=Physo125288;rank=1 scaffold_237 . exon 941 1252 . - . ID=Physo125288.1;Parent=Physo125288;constitutive=1;ensembl_phase=-1;rank=1 scaffold_237 ensembl protein_coding_gene 7308 8376 . - . ID=Physo144670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2370001;logic_name=jgi_physo1_1 scaffold_237 ensembl transcript 7308 8376 . - . ID=Physo144670;Parent=Physo144670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_237 . CDS 7308 8360 . - 0 ID=Physo144670;Parent=Physo144670;rank=1 scaffold_237 . exon 7308 8376 . - . ID=Physo144670.1;Parent=Physo144670;constitutive=1;ensembl_phase=-1;rank=1 scaffold_237 . repeat_region 17585 33773 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_234 1 35379 scaffold_234 . repeat_region 13 333 . ? . description=dust scaffold_234 . repeat_region 16 337 . ? . description=trf scaffold_234 . repeat_region 893 17690 . ? . description=dust scaffold_234 . repeat_region 17691 31889 . ? . description=dust scaffold_234 . repeat_region 34959 35078 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_228 1 35637 scaffold_228 . repeat_region 1131 17819 . ? . description=dust scaffold_228 . repeat_region 17820 34382 . ? . description=dust scaffold_228 ensembl protein_coding_gene 34383 35626 . - . ID=Physo125240;biotype=protein_coding;external_name=estExt_Genewise1.C_2280001;logic_name=jgi_physo1_1 scaffold_228 ensembl transcript 34383 35626 . - . ID=Physo125240;Parent=Physo125240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_228 . exon 34383 35626 . - . ID=Physo125240.1;Parent=Physo125240;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_228 . CDS 34385 35611 . - 0 ID=Physo125240;Parent=Physo125240;rank=1 ##gff-version 3 ##sequence-region scaffold_231 1 35771 scaffold_231 . repeat_region 738 17886 . ? . description=dust scaffold_231 ensembl protein_coding_gene 93 239 . + . ID=Physo125251;biotype=protein_coding;external_name=estExt_Genewise1.C_2310001;logic_name=jgi_physo1_1 scaffold_231 ensembl transcript 93 239 . + . ID=Physo125251;Parent=Physo125251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_231 . CDS 93 239 . + 0 ID=Physo125251;Parent=Physo125251;rank=1 scaffold_231 . exon 93 239 . + . ID=Physo125251.1;Parent=Physo125251;constitutive=1;rank=1 scaffold_231 ensembl protein_coding_gene 611 706 . - . ID=Physo125252;biotype=protein_coding;external_name=estExt_Genewise1.C_2310002;logic_name=jgi_physo1_1 scaffold_231 ensembl transcript 611 706 . - . ID=Physo125252;Parent=Physo125252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_231 . CDS 611 706 . - 0 ID=Physo125252;Parent=Physo125252;rank=1 scaffold_231 . exon 611 706 . - . ID=Physo125252.1;Parent=Physo125252;constitutive=1;rank=1 scaffold_231 . repeat_region 17887 28411 . ? . description=dust scaffold_231 . repeat_region 28924 29383 . ? . description=trf scaffold_231 . repeat_region 31665 31709 . ? . description=trf scaffold_231 ensembl protein_coding_gene 28679 28828 . - . ID=Physo125254;biotype=protein_coding;external_name=estExt_Genewise1.C_2310004;logic_name=jgi_physo1_1 scaffold_231 ensembl transcript 28679 28828 . - . ID=Physo125254;Parent=Physo125254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_231 . exon 28679 28828 . - . ID=Physo125254.1;Parent=Physo125254;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_231 . CDS 28680 28826 . - 0 ID=Physo125254;Parent=Physo125254;rank=1 scaffold_231 ensembl protein_coding_gene 29504 30442 . - . ID=Physo125258;biotype=protein_coding;external_name=estExt_Genewise1.C_2310008;logic_name=jgi_physo1_1 scaffold_231 ensembl transcript 29504 30442 . - . ID=Physo125258;Parent=Physo125258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_231 . CDS 29504 30442 . - 0 ID=Physo125258;Parent=Physo125258;rank=1 scaffold_231 . exon 29504 30442 . - . ID=Physo125258.1;Parent=Physo125258;constitutive=1;rank=1 scaffold_231 ensembl protein_coding_gene 30445 31617 . - . ID=Physo125263;biotype=protein_coding;external_name=estExt_Genewise1.C_2310013;logic_name=jgi_physo1_1 scaffold_231 ensembl transcript 30445 31617 . - . ID=Physo125263;Parent=Physo125263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_231 . CDS 30445 31617 . - 0 ID=Physo125263;Parent=Physo125263;rank=1 scaffold_231 . exon 30445 31617 . - . ID=Physo125263.1;Parent=Physo125263;constitutive=1;rank=1 scaffold_231 ensembl protein_coding_gene 32199 32951 . - . ID=Physo125269;biotype=protein_coding;external_name=estExt_Genewise1.C_2310019;logic_name=jgi_physo1_1 scaffold_231 ensembl transcript 32199 32951 . - . ID=Physo125269;Parent=Physo125269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_231 . CDS 32199 32951 . - 0 ID=Physo125269;Parent=Physo125269;rank=1 scaffold_231 . exon 32199 32951 . - . ID=Physo125269.1;Parent=Physo125269;constitutive=1;rank=1 scaffold_231 ensembl protein_coding_gene 34705 35361 . + . ID=Physo125272;biotype=protein_coding;external_name=estExt_Genewise1.C_2310022;logic_name=jgi_physo1_1 scaffold_231 ensembl transcript 34705 35361 . + . ID=Physo125272;Parent=Physo125272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_231 . CDS 34705 35361 . + 0 ID=Physo125272;Parent=Physo125272;rank=1 scaffold_231 . exon 34705 35361 . + . ID=Physo125272.1;Parent=Physo125272;constitutive=1;rank=1 scaffold_231 ensembl protein_coding_gene 35507 35605 . - . ID=Physo125275;biotype=protein_coding;external_name=estExt_Genewise1.C_2310025;logic_name=jgi_physo1_1 scaffold_231 ensembl transcript 35507 35605 . - . ID=Physo125275;Parent=Physo125275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_231 . CDS 35507 35605 . - 0 ID=Physo125275;Parent=Physo125275;rank=1 scaffold_231 . exon 35507 35605 . - . ID=Physo125275.1;Parent=Physo125275;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_225 1 35864 scaffold_225 . repeat_region 1922 17933 . ? . description=dust scaffold_225 ensembl protein_coding_gene 385 726 . + . ID=Physo125235;biotype=protein_coding;external_name=estExt_Genewise1.C_2250001;logic_name=jgi_physo1_1 scaffold_225 ensembl transcript 385 726 . + . ID=Physo125235;Parent=Physo125235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_225 . exon 385 726 . + . ID=Physo125235.1;Parent=Physo125235;constitutive=1;ensembl_phase=-1;rank=1 scaffold_225 . CDS 550 726 . + 0 ID=Physo125235;Parent=Physo125235;rank=1 scaffold_225 ensembl protein_coding_gene 754 1026 . + . ID=Physo125236;biotype=protein_coding;external_name=estExt_Genewise1.C_2250002;logic_name=jgi_physo1_1 scaffold_225 ensembl transcript 754 1026 . + . ID=Physo125236;Parent=Physo125236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_225 . exon 754 1026 . + . ID=Physo125236.1;Parent=Physo125236;constitutive=1;ensembl_phase=-1;rank=1 scaffold_225 . CDS 793 1026 . + 0 ID=Physo125236;Parent=Physo125236;rank=1 scaffold_225 ensembl protein_coding_gene 1108 1919 . + . ID=Physo125237;biotype=protein_coding;external_name=estExt_Genewise1.C_2250003;logic_name=jgi_physo1_1 scaffold_225 ensembl transcript 1108 1919 . + . ID=Physo125237;Parent=Physo125237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_225 . exon 1108 1247 . + . ID=Physo125237.1;Parent=Physo125237;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_225 . CDS 1126 1247 . + 0 ID=Physo125237;Parent=Physo125237;rank=1 scaffold_225 . CDS 1265 1919 . + 0 ID=Physo125237;Parent=Physo125237;rank=2 scaffold_225 . exon 1265 1919 . + . ID=Physo125237.2;Parent=Physo125237;constitutive=1;ensembl_phase=2;rank=2 scaffold_225 . repeat_region 17934 34304 . ? . description=dust scaffold_225 . biological_region 34381 34386 0.999 + . logic_name=eponine scaffold_225 . biological_region 34751 34755 0.999 - . logic_name=eponine scaffold_225 ensembl protein_coding_gene 34702 35301 . - . ID=Physo144645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2250001;logic_name=jgi_physo1_1 scaffold_225 ensembl transcript 34702 35301 . - . ID=Physo144645;Parent=Physo144645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_225 . CDS 34702 34982 . - 0 ID=Physo144645;Parent=Physo144645;rank=2 scaffold_225 . exon 34702 34982 . - . ID=Physo144645.2;Parent=Physo144645;constitutive=1;ensembl_phase=1;rank=2 scaffold_225 . CDS 35142 35301 . - 0 ID=Physo144645;Parent=Physo144645;rank=1 scaffold_225 . exon 35142 35301 . - . ID=Physo144645.1;Parent=Physo144645;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_224 1 36017 scaffold_224 . repeat_region 53 91 . ? . description=trf scaffold_224 . repeat_region 410 447 . ? . description=trf scaffold_224 . repeat_region 742 18009 . ? . description=dust scaffold_224 ensembl protein_coding_gene 77 33240 . - . ID=Physo144643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2240001;logic_name=jgi_physo1_1 scaffold_224 ensembl transcript 77 33240 . - . ID=Physo144643;Parent=Physo144643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_224 . CDS 77 319 . - 0 ID=Physo144643;Parent=Physo144643;rank=3 scaffold_224 . exon 77 319 . - . ID=Physo144643.3;Parent=Physo144643;constitutive=1;rank=3 scaffold_224 . CDS 433 625 . - 0 ID=Physo144643;Parent=Physo144643;rank=2 scaffold_224 . exon 433 625 . - . ID=Physo144643.2;Parent=Physo144643;constitutive=1;ensembl_phase=2;rank=2 scaffold_224 . CDS 32444 33240 . - 0 ID=Physo144643;Parent=Physo144643;rank=1 scaffold_224 . repeat_region 18010 32436 . ? . description=dust scaffold_224 ensembl protein_coding_gene 77 33240 . - . ID=Physo144643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2240001;logic_name=jgi_physo1_1 scaffold_224 ensembl transcript 77 33240 . - . ID=Physo144643;Parent=Physo144643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_224 . CDS 77 319 . - 0 ID=Physo144643;Parent=Physo144643;rank=3 scaffold_224 . CDS 433 625 . - 0 ID=Physo144643;Parent=Physo144643;rank=2 scaffold_224 . CDS 32444 33240 . - 0 ID=Physo144643;Parent=Physo144643;rank=1 scaffold_224 . biological_region 32792 32792 0.999 - . logic_name=eponine scaffold_224 . biological_region 32848 32848 0.999 + . logic_name=eponine scaffold_224 . biological_region 35637 35640 0.999 + . logic_name=eponine scaffold_224 ensembl protein_coding_gene 34049 34831 . - . ID=Physo125234;biotype=protein_coding;external_name=estExt_Genewise1.C_2240001;logic_name=jgi_physo1_1 scaffold_224 ensembl transcript 34049 34831 . - . ID=Physo125234;Parent=Physo125234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_224 . CDS 34049 34075 . - 0 ID=Physo125234;Parent=Physo125234;rank=4 scaffold_224 . exon 34049 34075 . - . ID=Physo125234.5;Parent=Physo125234;constitutive=1;rank=5 scaffold_224 . CDS 34135 34245 . - 0 ID=Physo125234;Parent=Physo125234;rank=3 scaffold_224 . exon 34135 34245 . - . ID=Physo125234.4;Parent=Physo125234;constitutive=1;rank=4 scaffold_224 . CDS 34319 34382 . - 0 ID=Physo125234;Parent=Physo125234;rank=2 scaffold_224 . exon 34319 34382 . - . ID=Physo125234.3;Parent=Physo125234;constitutive=1;ensembl_phase=2;rank=3 scaffold_224 . CDS 34449 34600 . - 0 ID=Physo125234;Parent=Physo125234;rank=1 scaffold_224 . exon 34449 34696 . - . ID=Physo125234.2;Parent=Physo125234;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_224 . exon 34739 34831 . - . ID=Physo125234.1;Parent=Physo125234;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_224 . exon 32444 33240 . - . ID=Physo144643.1;Parent=Physo144643;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_230 1 36212 scaffold_230 . biological_region 348 349 0.999 + . logic_name=eponine scaffold_230 . biological_region 419 424 0.999 + . logic_name=eponine scaffold_230 . biological_region 736 739 0.999 - . logic_name=eponine scaffold_230 . biological_region 745 751 0.999 + . logic_name=eponine scaffold_230 . biological_region 786 788 0.999 - . logic_name=eponine scaffold_230 . biological_region 791 794 0.999 + . logic_name=eponine scaffold_230 . biological_region 811 816 0.999 - . logic_name=eponine scaffold_230 . biological_region 897 900 0.999 - . logic_name=eponine scaffold_230 . biological_region 2161 2163 0.999 - . logic_name=eponine scaffold_230 . biological_region 2327 2328 0.999 + . logic_name=eponine scaffold_230 . biological_region 2348 2352 0.999 + . logic_name=eponine scaffold_230 . biological_region 2435 2439 0.999 - . logic_name=eponine scaffold_230 . biological_region 2504 2505 0.999 - . logic_name=eponine scaffold_230 . biological_region 3256 3257 0.999 - . logic_name=eponine scaffold_230 . biological_region 3357 3362 0.999 - . logic_name=eponine scaffold_230 . biological_region 3668 3670 0.999 + . logic_name=eponine scaffold_230 . biological_region 3738 3741 0.999 + . logic_name=eponine scaffold_230 . biological_region 4811 4811 0.999 + . logic_name=eponine scaffold_230 . biological_region 5771 5775 0.999 - . logic_name=eponine scaffold_230 . biological_region 6784 6786 0.999 + . logic_name=eponine scaffold_230 ensembl protein_coding_gene 1175 2560 . + . ID=Physo144651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300001;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 1175 2560 . + . ID=Physo144651;Parent=Physo144651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 1175 1312 . + 0 ID=Physo144651;Parent=Physo144651;rank=1 scaffold_230 . exon 1175 1312 . + . ID=Physo144651.1;Parent=Physo144651;constitutive=1;rank=1 scaffold_230 . CDS 1448 2560 . + 0 ID=Physo144651;Parent=Physo144651;rank=2 scaffold_230 . exon 1448 2560 . + . ID=Physo144651.2;Parent=Physo144651;constitutive=1;rank=2 scaffold_230 ensembl protein_coding_gene 2873 3613 . - . ID=Physo144652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300002;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 2873 3613 . - . ID=Physo144652;Parent=Physo144652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 2873 3613 . - 0 ID=Physo144652;Parent=Physo144652;rank=1 scaffold_230 . exon 2873 3613 . - . ID=Physo144652.1;Parent=Physo144652;constitutive=1;rank=1 scaffold_230 ensembl protein_coding_gene 3677 4565 . - . ID=Physo144653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300003;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 3677 4565 . - . ID=Physo144653;Parent=Physo144653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 3677 4066 . - 0 ID=Physo144653;Parent=Physo144653;rank=2 scaffold_230 . exon 3677 4066 . - . ID=Physo144653.2;Parent=Physo144653;constitutive=1;rank=2 scaffold_230 . CDS 4140 4565 . - 0 ID=Physo144653;Parent=Physo144653;rank=1 scaffold_230 . exon 4140 4565 . - . ID=Physo144653.1;Parent=Physo144653;constitutive=1;rank=1 scaffold_230 ensembl protein_coding_gene 4859 6309 . + . ID=Physo144654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300004;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 4859 6309 . + . ID=Physo144654;Parent=Physo144654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 4859 5343 . + 0 ID=Physo144654;Parent=Physo144654;rank=1 scaffold_230 . exon 4859 5343 . + . ID=Physo144654.1;Parent=Physo144654;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_230 . CDS 5459 5510 . + 0 ID=Physo144654;Parent=Physo144654;rank=2 scaffold_230 . exon 5459 5510 . + . ID=Physo144654.2;Parent=Physo144654;constitutive=1;ensembl_phase=2;rank=2 scaffold_230 . CDS 5654 5995 . + 0 ID=Physo144654;Parent=Physo144654;rank=3 scaffold_230 . exon 5654 5995 . + . ID=Physo144654.3;Parent=Physo144654;constitutive=1;rank=3 scaffold_230 . CDS 6070 6309 . + 0 ID=Physo144654;Parent=Physo144654;rank=4 scaffold_230 . exon 6070 6309 . + . ID=Physo144654.4;Parent=Physo144654;constitutive=1;rank=4 scaffold_230 ensembl protein_coding_gene 8891 10311 . - . ID=Physo144655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300005;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 8891 10311 . - . ID=Physo144655;Parent=Physo144655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 8891 10129 . - 0 ID=Physo144655;Parent=Physo144655;rank=2 scaffold_230 . exon 8891 10129 . - . ID=Physo144655.2;Parent=Physo144655;constitutive=1;rank=2 scaffold_230 . CDS 10243 10311 . - 0 ID=Physo144655;Parent=Physo144655;rank=1 scaffold_230 . repeat_region 10103 10110 . ? . description=dust scaffold_230 . repeat_region 10167 10216 . ? . description=dust scaffold_230 . repeat_region 10321 10335 . ? . description=dust scaffold_230 . repeat_region 12898 12947 . ? . description=dust scaffold_230 . repeat_region 14878 14927 . ? . description=dust scaffold_230 . exon 10243 10311 . - . ID=Physo144655.1;Parent=Physo144655;constitutive=1;rank=1 scaffold_230 ensembl protein_coding_gene 12380 13506 . - . ID=Physo144656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300006;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 12380 13506 . - . ID=Physo144656;Parent=Physo144656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 12380 12619 . - 0 ID=Physo144656;Parent=Physo144656;rank=3 scaffold_230 . exon 12380 12619 . - . ID=Physo144656.3;Parent=Physo144656;constitutive=1;rank=3 scaffold_230 . CDS 12694 12853 . - 0 ID=Physo144656;Parent=Physo144656;rank=2 scaffold_230 . exon 12694 12853 . - . ID=Physo144656.2;Parent=Physo144656;constitutive=1;ensembl_phase=2;rank=2 scaffold_230 . CDS 13022 13506 . - 0 ID=Physo144656;Parent=Physo144656;rank=1 scaffold_230 . exon 13022 13506 . - . ID=Physo144656.1;Parent=Physo144656;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_230 ensembl protein_coding_gene 13800 15305 . + . ID=Physo144657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300007;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 13800 15305 . + . ID=Physo144657;Parent=Physo144657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 13800 14225 . + 0 ID=Physo144657;Parent=Physo144657;rank=1 scaffold_230 . exon 13800 14225 . + . ID=Physo144657.1;Parent=Physo144657;constitutive=1;rank=1 scaffold_230 . CDS 14299 14610 . + 0 ID=Physo144657;Parent=Physo144657;rank=2 scaffold_230 . exon 14299 14610 . + . ID=Physo144657.2;Parent=Physo144657;constitutive=1;rank=2 scaffold_230 . CDS 14961 15305 . + 0 ID=Physo144657;Parent=Physo144657;rank=3 scaffold_230 . exon 14961 15305 . + . ID=Physo144657.3;Parent=Physo144657;constitutive=1;rank=3 scaffold_230 ensembl protein_coding_gene 15618 17003 . - . ID=Physo144658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300008;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 15618 17003 . - . ID=Physo144658;Parent=Physo144658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 15618 16730 . - 0 ID=Physo144658;Parent=Physo144658;rank=2 scaffold_230 . exon 15618 16730 . - . ID=Physo144658.2;Parent=Physo144658;constitutive=1;rank=2 scaffold_230 . CDS 16866 17003 . - 0 ID=Physo144658;Parent=Physo144658;rank=1 scaffold_230 . exon 16866 17003 . - . ID=Physo144658.1;Parent=Physo144658;constitutive=1;rank=1 scaffold_230 . biological_region 20126 20129 0.999 + . logic_name=eponine scaffold_230 . repeat_region 24465 24484 . ? . description=trf scaffold_230 . repeat_region 25350 25376 . ? . description=trf scaffold_230 . biological_region 26052 26055 0.999 - . logic_name=eponine scaffold_230 ensembl protein_coding_gene 19353 20921 . - . ID=Physo144659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300009;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 19353 20921 . - . ID=Physo144659;Parent=Physo144659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 19353 20921 . - 0 ID=Physo144659;Parent=Physo144659;rank=1 scaffold_230 . exon 19353 20921 . - . ID=Physo144659.1;Parent=Physo144659;constitutive=1;rank=1 scaffold_230 ensembl protein_coding_gene 21232 29323 . - . ID=Physo144660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2300010;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 21232 29323 . - . ID=Physo144660;Parent=Physo144660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . CDS 21232 21383 . - 0 ID=Physo144660;Parent=Physo144660;rank=11 scaffold_230 . exon 21232 21383 . - . ID=Physo144660.11;Parent=Physo144660;constitutive=1;ensembl_phase=1;rank=11 scaffold_230 . CDS 21467 21674 . - 0 ID=Physo144660;Parent=Physo144660;rank=10 scaffold_230 . exon 21467 21674 . - . ID=Physo144660.10;Parent=Physo144660;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_230 . CDS 21741 21923 . - 0 ID=Physo144660;Parent=Physo144660;rank=9 scaffold_230 . exon 21741 21923 . - . ID=Physo144660.9;Parent=Physo144660;constitutive=1;rank=9 scaffold_230 . CDS 21982 21993 . - 0 ID=Physo144660;Parent=Physo144660;rank=8 scaffold_230 . exon 21982 21993 . - . ID=Physo144660.8;Parent=Physo144660;constitutive=1;rank=8 scaffold_230 . CDS 22353 22799 . - 0 ID=Physo144660;Parent=Physo144660;rank=7 scaffold_230 . exon 22353 22799 . - . ID=Physo144660.7;Parent=Physo144660;constitutive=1;rank=7 scaffold_230 . CDS 22875 23162 . - 0 ID=Physo144660;Parent=Physo144660;rank=6 scaffold_230 . exon 22875 23162 . - . ID=Physo144660.6;Parent=Physo144660;constitutive=1;rank=6 scaffold_230 . CDS 23234 23539 . - 0 ID=Physo144660;Parent=Physo144660;rank=5 scaffold_230 . exon 23234 23539 . - . ID=Physo144660.5;Parent=Physo144660;constitutive=1;rank=5 scaffold_230 . CDS 23633 25546 . - 0 ID=Physo144660;Parent=Physo144660;rank=4 scaffold_230 . exon 23633 25546 . - . ID=Physo144660.4;Parent=Physo144660;constitutive=1;rank=4 scaffold_230 . CDS 25632 26128 . - 0 ID=Physo144660;Parent=Physo144660;rank=3 scaffold_230 . exon 25632 26128 . - . ID=Physo144660.3;Parent=Physo144660;constitutive=1;ensembl_phase=1;rank=3 scaffold_230 . CDS 26844 27343 . - 0 ID=Physo144660;Parent=Physo144660;rank=2 scaffold_230 . exon 26844 27343 . - . ID=Physo144660.2;Parent=Physo144660;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_230 . CDS 27411 29323 . - 0 ID=Physo144660;Parent=Physo144660;rank=1 scaffold_230 . repeat_region 32663 33050 . ? . description=dust scaffold_230 . repeat_region 33872 34416 . ? . description=dust scaffold_230 ensembl protein_coding_gene 33122 33870 . - . ID=Physo109663;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2300001;logic_name=jgi_physo1_1 scaffold_230 ensembl transcript 33122 33870 . - . ID=Physo109663;Parent=Physo109663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_230 . exon 33122 33870 . - . ID=Physo109663.1;Parent=Physo109663;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_230 . CDS 33359 33811 . - 0 ID=Physo109663;Parent=Physo109663;rank=1 scaffold_230 . exon 27411 29323 . - . ID=Physo144660.1;Parent=Physo144660;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_222 1 36906 scaffold_222 . repeat_region 1 3354 . ? . description=trf scaffold_222 . repeat_region 3528 18454 . ? . description=dust scaffold_222 ensembl protein_coding_gene 2844 2915 . - . ID=Physo125233;biotype=protein_coding;external_name=estExt_Genewise1.C_2220006;logic_name=jgi_physo1_1 scaffold_222 ensembl transcript 2844 2915 . - . ID=Physo125233;Parent=Physo125233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_222 . CDS 2844 2915 . - 0 ID=Physo125233;Parent=Physo125233;rank=1 scaffold_222 . exon 2844 2915 . - . ID=Physo125233.1;Parent=Physo125233;constitutive=1;rank=1 scaffold_222 . repeat_region 18455 25971 . ? . description=dust scaffold_222 . repeat_region 25996 26973 . - . description=GypsyPi-1c_I-int scaffold_222 . biological_region 27463 27467 0.999 - . logic_name=eponine scaffold_222 . biological_region 27502 27503 0.999 + . logic_name=eponine scaffold_222 . biological_region 27539 27542 0.999 + . logic_name=eponine scaffold_222 . biological_region 27565 27571 0.999 - . logic_name=eponine scaffold_222 . biological_region 27636 27637 0.999 - . logic_name=eponine scaffold_222 ensembl protein_coding_gene 26727 27644 . - . ID=Physo144640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2220001;logic_name=jgi_physo1_1 scaffold_222 ensembl transcript 26727 27644 . - . ID=Physo144640;Parent=Physo144640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_222 . CDS 26727 27044 . - 0 ID=Physo144640;Parent=Physo144640;rank=2 scaffold_222 . exon 26727 27044 . - . ID=Physo144640.2;Parent=Physo144640;constitutive=1;rank=2 scaffold_222 . CDS 27264 27644 . - 0 ID=Physo144640;Parent=Physo144640;rank=1 scaffold_222 . exon 27264 27644 . - . ID=Physo144640.1;Parent=Physo144640;constitutive=1;rank=1 scaffold_222 . repeat_region 30205 30273 . ? . description=trf scaffold_222 . repeat_region 30238 30609 . ? . description=trf scaffold_222 . repeat_region 30574 30642 . ? . description=trf scaffold_222 . repeat_region 36250 36292 . ? . description=trf scaffold_222 . repeat_region 36571 36906 . ? . description=trf scaffold_222 ensembl protein_coding_gene 31571 31981 . - . ID=Physo109662;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2220001;logic_name=jgi_physo1_1 scaffold_222 ensembl transcript 31571 31981 . - . ID=Physo109662;Parent=Physo109662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_222 . CDS 31571 31981 . - 0 ID=Physo109662;Parent=Physo109662;rank=1 scaffold_222 . exon 31571 31981 . - . ID=Physo109662.1;Parent=Physo109662;constitutive=1;rank=1 scaffold_222 ensembl protein_coding_gene 32139 35176 . - . ID=Physo144642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2220003;logic_name=jgi_physo1_1 scaffold_222 ensembl transcript 32139 35176 . - . ID=Physo144642;Parent=Physo144642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_222 . CDS 32139 32894 . - 0 ID=Physo144642;Parent=Physo144642;rank=4 scaffold_222 . exon 32139 32894 . - . ID=Physo144642.4;Parent=Physo144642;constitutive=1;rank=4 scaffold_222 . CDS 33045 33145 . - 0 ID=Physo144642;Parent=Physo144642;rank=3 scaffold_222 . exon 33045 33145 . - . ID=Physo144642.3;Parent=Physo144642;constitutive=1;ensembl_phase=1;rank=3 scaffold_222 . CDS 33184 33335 . - 0 ID=Physo144642;Parent=Physo144642;rank=2 scaffold_222 . exon 33184 33335 . - . ID=Physo144642.2;Parent=Physo144642;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_222 . CDS 33402 35176 . - 0 ID=Physo144642;Parent=Physo144642;rank=1 scaffold_222 . exon 33402 35176 . - . ID=Physo144642.1;Parent=Physo144642;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_220 1 37285 scaffold_220 . biological_region 281 286 0.999 - . logic_name=eponine scaffold_220 . repeat_region 1529 1578 . ? . description=dust scaffold_220 . repeat_region 2417 18643 . ? . description=dust scaffold_220 . repeat_region 18644 25011 . ? . description=dust scaffold_220 . biological_region 30354 30356 0.999 + . logic_name=eponine scaffold_220 . biological_region 32741 32743 0.999 + . logic_name=eponine scaffold_220 . biological_region 32813 32815 0.999 - . logic_name=eponine scaffold_220 . biological_region 32888 32891 0.999 - . logic_name=eponine scaffold_220 . biological_region 32907 32913 0.999 - . logic_name=eponine scaffold_220 . repeat_region 35253 35343 . ? . description=trf scaffold_220 . biological_region 35655 35663 0.999 + . logic_name=eponine scaffold_220 . biological_region 35682 35684 0.999 - . logic_name=eponine scaffold_220 . repeat_region 36689 36715 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_221 1 37521 scaffold_221 . repeat_region 92 109 . ? . description=dust scaffold_221 . biological_region 342 346 0.999 + . logic_name=eponine scaffold_221 . biological_region 347 353 0.999 - . logic_name=eponine scaffold_221 . biological_region 1087 1093 0.999 + . logic_name=eponine scaffold_221 . biological_region 1108 1110 0.999 + . logic_name=eponine scaffold_221 . biological_region 1128 1132 0.999 - . logic_name=eponine scaffold_221 . biological_region 1162 1168 0.999 - . logic_name=eponine scaffold_221 . repeat_region 1165 1201 . ? . description=trf scaffold_221 . biological_region 1177 1177 0.999 - . logic_name=eponine scaffold_221 . biological_region 1252 1255 0.999 - . logic_name=eponine scaffold_221 . repeat_region 1971 1998 . ? . description=trf scaffold_221 . repeat_region 6551 6685 . ? . description=dust scaffold_221 ensembl protein_coding_gene 8711 9592 . - . ID=Physo109660;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2210001;logic_name=jgi_physo1_1 scaffold_221 ensembl transcript 8711 9592 . - . ID=Physo109660;Parent=Physo109660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_221 . CDS 8711 9592 . - 0 ID=Physo109660;Parent=Physo109660;rank=1 scaffold_221 . exon 8711 9592 . - . ID=Physo109660.1;Parent=Physo109660;constitutive=1;rank=1 scaffold_221 ensembl protein_coding_gene 165 5293 . + . ID=Physo144632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2210001;logic_name=jgi_physo1_1 scaffold_221 ensembl transcript 165 5293 . + . ID=Physo144632;Parent=Physo144632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_221 . exon 165 763 . + . ID=Physo144632.1;Parent=Physo144632;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_221 . CDS 264 763 . + 0 ID=Physo144632;Parent=Physo144632;rank=1 scaffold_221 . CDS 819 1276 . + 0 ID=Physo144632;Parent=Physo144632;rank=2 scaffold_221 . exon 819 1276 . + . ID=Physo144632.2;Parent=Physo144632;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_221 . CDS 1395 1653 . + 0 ID=Physo144632;Parent=Physo144632;rank=3 scaffold_221 . exon 1395 1653 . + . ID=Physo144632.3;Parent=Physo144632;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_221 . CDS 1967 2265 . + 0 ID=Physo144632;Parent=Physo144632;rank=4 scaffold_221 . exon 1967 2265 . + . ID=Physo144632.4;Parent=Physo144632;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_221 . CDS 2401 2597 . + 0 ID=Physo144632;Parent=Physo144632;rank=5 scaffold_221 . exon 2401 2597 . + . ID=Physo144632.5;Parent=Physo144632;constitutive=1;ensembl_phase=1;rank=5 scaffold_221 . CDS 3027 3803 . + 0 ID=Physo144632;Parent=Physo144632;rank=6 scaffold_221 . exon 3027 3803 . + . ID=Physo144632.6;Parent=Physo144632;constitutive=1;rank=6 scaffold_221 . CDS 3839 4006 . + 0 ID=Physo144632;Parent=Physo144632;rank=7 scaffold_221 . exon 3839 4006 . + . ID=Physo144632.7;Parent=Physo144632;constitutive=1;rank=7 scaffold_221 . CDS 4202 4978 . + 0 ID=Physo144632;Parent=Physo144632;rank=8 scaffold_221 . exon 4202 4978 . + . ID=Physo144632.8;Parent=Physo144632;constitutive=1;rank=8 scaffold_221 . CDS 5273 5293 . + 0 ID=Physo144632;Parent=Physo144632;rank=9 scaffold_221 . exon 5273 5293 . + . ID=Physo144632.9;Parent=Physo144632;constitutive=1;rank=9 scaffold_221 ensembl protein_coding_gene 9696 12762 . - . ID=Physo144634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2210003;logic_name=jgi_physo1_1 scaffold_221 ensembl transcript 9696 12762 . - . ID=Physo144634;Parent=Physo144634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_221 . exon 9696 12762 . - . ID=Physo144634.1;Parent=Physo144634;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_221 . CDS 9697 12762 . - 0 ID=Physo144634;Parent=Physo144634;rank=1 scaffold_221 ensembl protein_coding_gene 14144 14962 . - . ID=Physo144635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2210004;logic_name=jgi_physo1_1 scaffold_221 ensembl transcript 14144 14962 . - . ID=Physo144635;Parent=Physo144635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_221 . CDS 14144 14962 . - 0 ID=Physo144635;Parent=Physo144635;rank=1 scaffold_221 . exon 14144 14962 . - . ID=Physo144635.1;Parent=Physo144635;constitutive=1;rank=1 scaffold_221 . repeat_region 19196 19247 . ? . description=trf scaffold_221 . repeat_region 19218 19277 . ? . description=trf scaffold_221 . repeat_region 20489 21380 . ? . description=dust scaffold_221 . biological_region 22495 22497 0.999 + . logic_name=eponine scaffold_221 . repeat_region 22631 23785 . ? . description=dust scaffold_221 . repeat_region 24256 24306 . ? . description=trf scaffold_221 . repeat_region 24256 24308 . ? . description=trf scaffold_221 . biological_region 25768 25770 0.999 + . logic_name=eponine scaffold_221 . repeat_region 26189 26202 . ? . description=dust scaffold_221 . repeat_region 26515 26564 . ? . description=dust scaffold_221 . repeat_region 27683 27732 . ? . description=dust scaffold_221 ensembl protein_coding_gene 20159 24109 . - . ID=Physo144636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2210005;logic_name=jgi_physo1_1 scaffold_221 ensembl transcript 20159 24109 . - . ID=Physo144636;Parent=Physo144636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_221 . CDS 20159 20430 . - 0 ID=Physo144636;Parent=Physo144636;rank=4 scaffold_221 . exon 20159 20430 . - . ID=Physo144636.4;Parent=Physo144636;constitutive=1;ensembl_phase=1;rank=4 scaffold_221 . CDS 21414 22185 . - 0 ID=Physo144636;Parent=Physo144636;rank=3 scaffold_221 . exon 21414 22185 . - . ID=Physo144636.3;Parent=Physo144636;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_221 . CDS 22216 22611 . - 0 ID=Physo144636;Parent=Physo144636;rank=2 scaffold_221 . exon 22216 22611 . - . ID=Physo144636.2;Parent=Physo144636;constitutive=1;rank=2 scaffold_221 . CDS 23873 24109 . - 0 ID=Physo144636;Parent=Physo144636;rank=1 scaffold_221 . exon 23873 24109 . - . ID=Physo144636.1;Parent=Physo144636;constitutive=1;rank=1 scaffold_221 ensembl protein_coding_gene 26614 27658 . - . ID=Physo144637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2210006;logic_name=jgi_physo1_1 scaffold_221 ensembl transcript 26614 27658 . - . ID=Physo144637;Parent=Physo144637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_221 . CDS 26614 26631 . - 0 ID=Physo144637;Parent=Physo144637;rank=2 scaffold_221 . exon 26614 26631 . - . ID=Physo144637.2;Parent=Physo144637;constitutive=1;rank=2 scaffold_221 . CDS 26657 27658 . - 0 ID=Physo144637;Parent=Physo144637;rank=1 scaffold_221 . exon 26657 27658 . - . ID=Physo144637.1;Parent=Physo144637;constitutive=1;rank=1 scaffold_221 ensembl protein_coding_gene 36313 37311 . - . ID=Physo109661;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2210002;logic_name=jgi_physo1_1 scaffold_221 ensembl transcript 36313 37311 . - . ID=Physo109661;Parent=Physo109661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_221 . CDS 36313 37308 . - 0 ID=Physo109661;Parent=Physo109661;rank=1 scaffold_221 . exon 36313 37311 . - . ID=Physo109661.1;Parent=Physo109661;constitutive=1;ensembl_phase=-1;rank=1 scaffold_221 ensembl protein_coding_gene 37333 37521 . - . ID=Physo125226;biotype=protein_coding;external_name=estExt_Genewise1.C_2210029;logic_name=jgi_physo1_1 scaffold_221 ensembl transcript 37333 37521 . - . ID=Physo125226;Parent=Physo125226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_221 . exon 37333 37521 . - . ID=Physo125226.1;Parent=Physo125226;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_221 . CDS 37334 37519 . - 0 ID=Physo125226;Parent=Physo125226;rank=1 scaffold_221 ensembl protein_coding_gene 33369 36048 . - . ID=Physo144638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2210007;logic_name=jgi_physo1_1 scaffold_221 ensembl transcript 33369 36048 . - . ID=Physo144638;Parent=Physo144638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_221 . CDS 33369 34290 . - 0 ID=Physo144638;Parent=Physo144638;rank=5 scaffold_221 . exon 33369 34290 . - . ID=Physo144638.5;Parent=Physo144638;constitutive=1;ensembl_phase=2;rank=5 scaffold_221 . CDS 34397 34863 . - 0 ID=Physo144638;Parent=Physo144638;rank=4 scaffold_221 . exon 34397 34863 . - . ID=Physo144638.4;Parent=Physo144638;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_221 . CDS 35001 35465 . - 0 ID=Physo144638;Parent=Physo144638;rank=3 scaffold_221 . exon 35001 35465 . - . ID=Physo144638.3;Parent=Physo144638;constitutive=1;rank=3 scaffold_221 . CDS 35550 35714 . - 0 ID=Physo144638;Parent=Physo144638;rank=2 scaffold_221 . exon 35550 35714 . - . ID=Physo144638.2;Parent=Physo144638;constitutive=1;rank=2 scaffold_221 . CDS 35755 36048 . - 0 ID=Physo144638;Parent=Physo144638;rank=1 scaffold_221 . exon 35755 36048 . - . ID=Physo144638.1;Parent=Physo144638;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_219 1 37548 scaffold_219 . biological_region 1743 1743 0.999 + . logic_name=eponine scaffold_219 . biological_region 1805 1807 0.999 + . logic_name=eponine scaffold_219 . repeat_region 1845 2067 . ? . description=trf scaffold_219 . repeat_region 1868 2067 . ? . description=trf scaffold_219 . biological_region 2725 2730 0.999 - . logic_name=eponine scaffold_219 . biological_region 2807 2809 0.999 + . logic_name=eponine scaffold_219 . biological_region 2943 2950 0.999 - . logic_name=eponine scaffold_219 . biological_region 3005 3007 0.999 - . logic_name=eponine scaffold_219 . repeat_region 5357 5407 . ? . description=trf scaffold_219 . repeat_region 5357 5409 . ? . description=trf scaffold_219 . repeat_region 5484 5521 . ? . description=trf scaffold_219 . biological_region 5739 5741 0.999 - . logic_name=eponine scaffold_219 . repeat_region 6066 18775 . ? . description=dust scaffold_219 ensembl protein_coding_gene 5582 6065 . - . ID=Physo109659;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2190001;logic_name=jgi_physo1_1 scaffold_219 ensembl transcript 5582 6065 . - . ID=Physo109659;Parent=Physo109659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_219 . CDS 5582 6040 . - 0 ID=Physo109659;Parent=Physo109659;rank=1 scaffold_219 . exon 5582 6065 . - . ID=Physo109659.1;Parent=Physo109659;constitutive=1;ensembl_phase=-1;rank=1 scaffold_219 ensembl protein_coding_gene 1558 3820 . - . ID=Physo144627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2190001;logic_name=jgi_physo1_1 scaffold_219 ensembl transcript 1558 3820 . - . ID=Physo144627;Parent=Physo144627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_219 . CDS 1558 1916 . - 0 ID=Physo144627;Parent=Physo144627;rank=6 scaffold_219 . exon 1558 1916 . - . ID=Physo144627.6;Parent=Physo144627;constitutive=1;ensembl_phase=1;rank=6 scaffold_219 . CDS 1952 2551 . - 0 ID=Physo144627;Parent=Physo144627;rank=5 scaffold_219 . exon 1952 2551 . - . ID=Physo144627.5;Parent=Physo144627;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_219 . CDS 2739 2840 . - 0 ID=Physo144627;Parent=Physo144627;rank=4 scaffold_219 . exon 2739 2840 . - . ID=Physo144627.4;Parent=Physo144627;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_219 . CDS 2881 3118 . - 0 ID=Physo144627;Parent=Physo144627;rank=3 scaffold_219 . exon 2881 3118 . - . ID=Physo144627.3;Parent=Physo144627;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_219 . CDS 3150 3723 . - 0 ID=Physo144627;Parent=Physo144627;rank=2 scaffold_219 . exon 3150 3723 . - . ID=Physo144627.2;Parent=Physo144627;constitutive=1;ensembl_phase=2;rank=2 scaffold_219 . CDS 3792 3820 . - 0 ID=Physo144627;Parent=Physo144627;rank=1 scaffold_219 . exon 3792 3820 . - . ID=Physo144627.1;Parent=Physo144627;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_219 . repeat_region 18776 22365 . ? . description=dust scaffold_219 . repeat_region 24439 25593 . ? . description=dust scaffold_219 . biological_region 26262 26264 0.999 + . logic_name=eponine scaffold_219 . repeat_region 26650 26699 . ? . description=dust scaffold_219 . biological_region 27099 27102 0.999 - . logic_name=eponine scaffold_219 . repeat_region 27671 27913 . ? . description=dust scaffold_219 ensembl protein_coding_gene 25594 25761 . - . ID=Physo125190;biotype=protein_coding;external_name=estExt_Genewise1.C_2190007;logic_name=jgi_physo1_1 scaffold_219 ensembl transcript 25594 25761 . - . ID=Physo125190;Parent=Physo125190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_219 . CDS 25594 25740 . - 0 ID=Physo125190;Parent=Physo125190;rank=1 scaffold_219 . exon 25594 25761 . - . ID=Physo125190.1;Parent=Physo125190;constitutive=1;ensembl_phase=-1;rank=1 scaffold_219 ensembl protein_coding_gene 22967 23645 . - . ID=Physo144629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2190003;logic_name=jgi_physo1_1 scaffold_219 ensembl transcript 22967 23645 . - . ID=Physo144629;Parent=Physo144629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_219 . CDS 22967 23006 . - 0 ID=Physo144629;Parent=Physo144629;rank=2 scaffold_219 . exon 22967 23006 . - . ID=Physo144629.2;Parent=Physo144629;constitutive=1;ensembl_phase=2;rank=2 scaffold_219 . CDS 23068 23645 . - 0 ID=Physo144629;Parent=Physo144629;rank=1 scaffold_219 . exon 23068 23645 . - . ID=Physo144629.1;Parent=Physo144629;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_219 ensembl protein_coding_gene 25761 28750 . - . ID=Physo144630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2190004;logic_name=jgi_physo1_1 scaffold_219 ensembl transcript 25761 28750 . - . ID=Physo144630;Parent=Physo144630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_219 . CDS 25761 25797 . - 0 ID=Physo144630;Parent=Physo144630;rank=4 scaffold_219 . exon 25761 25797 . - . ID=Physo144630.4;Parent=Physo144630;constitutive=1;ensembl_phase=2;rank=4 scaffold_219 . CDS 25835 26613 . - 0 ID=Physo144630;Parent=Physo144630;rank=3 scaffold_219 . exon 25835 26613 . - . ID=Physo144630.3;Parent=Physo144630;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_219 . CDS 26755 26819 . - 0 ID=Physo144630;Parent=Physo144630;rank=2 scaffold_219 . exon 26755 26819 . - . ID=Physo144630.2;Parent=Physo144630;constitutive=1;ensembl_phase=1;rank=2 scaffold_219 . CDS 27919 28750 . - 0 ID=Physo144630;Parent=Physo144630;rank=1 scaffold_219 . exon 27919 28750 . - . ID=Physo144630.1;Parent=Physo144630;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_219 . repeat_region 29030 29224 . ? . description=trf scaffold_219 ensembl protein_coding_gene 32881 37300 . - . ID=Physo144631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2190005;logic_name=jgi_physo1_1 scaffold_219 ensembl transcript 32881 37300 . - . ID=Physo144631;Parent=Physo144631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_219 . CDS 32881 32912 . - 0 ID=Physo144631;Parent=Physo144631;rank=5 scaffold_219 . exon 32881 32912 . - . ID=Physo144631.5;Parent=Physo144631;constitutive=1;ensembl_phase=1;rank=5 scaffold_219 . CDS 32938 34540 . - 0 ID=Physo144631;Parent=Physo144631;rank=4 scaffold_219 . exon 32938 34540 . - . ID=Physo144631.4;Parent=Physo144631;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_219 . CDS 35806 36864 . - 0 ID=Physo144631;Parent=Physo144631;rank=3 scaffold_219 . exon 35806 36864 . - . ID=Physo144631.3;Parent=Physo144631;constitutive=1;rank=3 scaffold_219 . CDS 36889 37134 . - 0 ID=Physo144631;Parent=Physo144631;rank=2 scaffold_219 . exon 36889 37134 . - . ID=Physo144631.2;Parent=Physo144631;constitutive=1;rank=2 scaffold_219 . CDS 37289 37300 . - 0 ID=Physo144631;Parent=Physo144631;rank=1 scaffold_219 . exon 37289 37300 . - . ID=Physo144631.1;Parent=Physo144631;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_218 1 37697 scaffold_218 . repeat_region 580 771 . ? . description=trf scaffold_218 . repeat_region 1954 18849 . ? . description=dust scaffold_218 . repeat_region 18850 30380 . ? . description=dust scaffold_218 . biological_region 37040 37045 0.999 + . logic_name=eponine scaffold_218 . repeat_region 37602 37625 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_217 1 37933 scaffold_217 . repeat_region 1167 1221 . ? . description=trf scaffold_217 . repeat_region 1188 1241 . ? . description=dust scaffold_217 . repeat_region 2002 2025 . ? . description=trf scaffold_217 . repeat_region 4680 4879 . ? . description=dust scaffold_217 . repeat_region 7943 8775 . ? . description=dust scaffold_217 ensembl protein_coding_gene 2459 2944 . + . ID=Physo109657;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2170001;logic_name=jgi_physo1_1 scaffold_217 ensembl transcript 2459 2944 . + . ID=Physo109657;Parent=Physo109657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_217 . CDS 2459 2944 . + 0 ID=Physo109657;Parent=Physo109657;rank=1 scaffold_217 . exon 2459 2944 . + . ID=Physo109657.1;Parent=Physo109657;constitutive=1;rank=1 scaffold_217 ensembl protein_coding_gene 5383 6597 . - . ID=Physo109658;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2170002;logic_name=jgi_physo1_1 scaffold_217 ensembl transcript 5383 6597 . - . ID=Physo109658;Parent=Physo109658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_217 . exon 5383 6597 . - . ID=Physo109658.1;Parent=Physo109658;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_217 . CDS 5614 6597 . - 0 ID=Physo109658;Parent=Physo109658;rank=1 scaffold_217 ensembl protein_coding_gene 55 2339 . + . ID=Physo144624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2170001;logic_name=jgi_physo1_1 scaffold_217 ensembl transcript 55 2339 . + . ID=Physo144624;Parent=Physo144624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_217 . exon 55 801 . + . ID=Physo144624.1;Parent=Physo144624;constitutive=1;ensembl_phase=-1;rank=1 scaffold_217 . CDS 184 801 . + 0 ID=Physo144624;Parent=Physo144624;rank=1 scaffold_217 . CDS 976 1578 . + 0 ID=Physo144624;Parent=Physo144624;rank=2 scaffold_217 . exon 976 1578 . + . ID=Physo144624.2;Parent=Physo144624;constitutive=1;rank=2 scaffold_217 . CDS 1628 1781 . + 0 ID=Physo144624;Parent=Physo144624;rank=3 scaffold_217 . exon 1628 1781 . + . ID=Physo144624.3;Parent=Physo144624;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_217 . CDS 1913 2230 . + 0 ID=Physo144624;Parent=Physo144624;rank=4 scaffold_217 . exon 1913 2230 . + . ID=Physo144624.4;Parent=Physo144624;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_217 . CDS 2274 2338 . + 0 ID=Physo144624;Parent=Physo144624;rank=5 scaffold_217 . exon 2274 2339 . + . ID=Physo144624.5;Parent=Physo144624;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_217 . repeat_region 18968 36862 . ? . description=dust scaffold_217 ensembl tRNA_gene 37622 37694 . - . ID=EPrPSOG00000000157;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_217 ensembl transcript 37622 37694 . - . ID=EPrPSOT00000000157;Parent=EPrPSOG00000000157;biotype=tRNA;logic_name=ncrna_eg scaffold_217 ensembl tRNA_gene 37028 37100 . - . ID=EPrPSOG00000000219;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_217 ensembl transcript 37028 37100 . - . ID=EPrPSOT00000000219;Parent=EPrPSOG00000000219;biotype=tRNA;logic_name=ncrna_eg scaffold_217 . exon 37622 37694 . - . ID=EPrPSOE00000000157;Parent=EPrPSOT00000000157;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_217 . exon 37028 37100 . - . ID=EPrPSOE00000000219;Parent=EPrPSOT00000000219;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_216 1 38452 scaffold_216 . biological_region 397 401 0.999 + . logic_name=eponine scaffold_216 . repeat_region 423 758 . ? . description=trf scaffold_216 . biological_region 709 711 0.999 - . logic_name=eponine scaffold_216 . repeat_region 2743 2750 . ? . description=dust scaffold_216 . repeat_region 3878 19227 . ? . description=dust scaffold_216 . repeat_region 19228 25587 . ? . description=dust scaffold_216 . biological_region 26110 26111 0.999 + . logic_name=eponine scaffold_216 . biological_region 26398 26399 0.999 + . logic_name=eponine scaffold_216 . biological_region 26566 26572 0.999 + . logic_name=eponine scaffold_216 . biological_region 26586 26588 0.999 + . logic_name=eponine scaffold_216 . biological_region 27263 27269 0.999 - . logic_name=eponine scaffold_216 ensembl protein_coding_gene 25588 26866 . + . ID=Physo144620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2160001;logic_name=jgi_physo1_1 scaffold_216 ensembl transcript 25588 26866 . + . ID=Physo144620;Parent=Physo144620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_216 . exon 25588 26866 . + . ID=Physo144620.1;Parent=Physo144620;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_216 . CDS 25727 26761 . + 0 ID=Physo144620;Parent=Physo144620;rank=1 scaffold_216 ensembl protein_coding_gene 28160 31175 . - . ID=Physo144621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2160002;logic_name=jgi_physo1_1 scaffold_216 ensembl transcript 28160 31175 . - . ID=Physo144621;Parent=Physo144621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_216 . CDS 28160 28171 . - 0 ID=Physo144621;Parent=Physo144621;rank=2 scaffold_216 . exon 28160 28171 . - . ID=Physo144621.2;Parent=Physo144621;constitutive=1;rank=2 scaffold_216 . CDS 28269 31175 . - 0 ID=Physo144621;Parent=Physo144621;rank=1 scaffold_216 . exon 28269 31175 . - . ID=Physo144621.1;Parent=Physo144621;constitutive=1;rank=1 scaffold_216 ensembl protein_coding_gene 31501 34856 . - . ID=Physo144622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2160003;logic_name=jgi_physo1_1 scaffold_216 ensembl transcript 31501 34856 . - . ID=Physo144622;Parent=Physo144622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_216 . CDS 31501 32230 . - 0 ID=Physo144622;Parent=Physo144622;rank=3 scaffold_216 . exon 31501 32230 . - . ID=Physo144622.3;Parent=Physo144622;constitutive=1;ensembl_phase=2;rank=3 scaffold_216 . CDS 32318 34658 . - 0 ID=Physo144622;Parent=Physo144622;rank=2 scaffold_216 . exon 32318 34658 . - . ID=Physo144622.2;Parent=Physo144622;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_216 . CDS 34748 34856 . - 0 ID=Physo144622;Parent=Physo144622;rank=1 scaffold_216 . exon 34748 34856 . - . ID=Physo144622.1;Parent=Physo144622;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_216 ensembl protein_coding_gene 36329 38324 . - . ID=Physo144623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2160004;logic_name=jgi_physo1_1 scaffold_216 ensembl transcript 36329 38324 . - . ID=Physo144623;Parent=Physo144623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_216 . CDS 36329 36419 . - 0 ID=Physo144623;Parent=Physo144623;rank=5 scaffold_216 . exon 36329 36419 . - . ID=Physo144623.5;Parent=Physo144623;constitutive=1;ensembl_phase=2;rank=5 scaffold_216 . CDS 36451 37085 . - 0 ID=Physo144623;Parent=Physo144623;rank=4 scaffold_216 . exon 36451 37085 . - . ID=Physo144623.4;Parent=Physo144623;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_216 . CDS 37463 37602 . - 0 ID=Physo144623;Parent=Physo144623;rank=3 scaffold_216 . exon 37463 37602 . - . ID=Physo144623.3;Parent=Physo144623;constitutive=1;ensembl_phase=1;rank=3 scaffold_216 . CDS 37851 38241 . - 0 ID=Physo144623;Parent=Physo144623;rank=2 scaffold_216 . exon 37851 38241 . - . ID=Physo144623.2;Parent=Physo144623;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_216 . CDS 38319 38324 . - 0 ID=Physo144623;Parent=Physo144623;rank=1 scaffold_216 . exon 38319 38324 . - . ID=Physo144623.1;Parent=Physo144623;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_215 1 38777 scaffold_215 . repeat_region 890 6890 . ? . description=dust scaffold_215 . repeat_region 7309 7836 . - . description=GypsyPi-1c_I-int scaffold_215 . repeat_region 7860 19389 . ? . description=dust scaffold_215 ensembl protein_coding_gene 6891 7860 . - . ID=Physo125181;biotype=protein_coding;external_name=estExt_Genewise1.C_2150001;logic_name=jgi_physo1_1 scaffold_215 ensembl transcript 6891 7860 . - . ID=Physo125181;Parent=Physo125181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_215 . CDS 6891 7183 . - 0 ID=Physo125181;Parent=Physo125181;rank=2 scaffold_215 . exon 6891 7183 . - . ID=Physo125181.2;Parent=Physo125181;constitutive=1;ensembl_phase=1;rank=2 scaffold_215 . CDS 7353 7821 . - 0 ID=Physo125181;Parent=Physo125181;rank=1 scaffold_215 . exon 7353 7860 . - . ID=Physo125181.1;Parent=Physo125181;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_215 . repeat_region 19390 38033 . ? . description=dust scaffold_215 . repeat_region 38034 38753 . - . description=GypsyPi-1c_I-int scaffold_215 ensembl protein_coding_gene 38126 38582 . - . ID=Physo144619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2150001;logic_name=jgi_physo1_1 scaffold_215 ensembl transcript 38126 38582 . - . ID=Physo144619;Parent=Physo144619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_215 . CDS 38126 38200 . - 0 ID=Physo144619;Parent=Physo144619;rank=2 scaffold_215 . exon 38126 38200 . - . ID=Physo144619.2;Parent=Physo144619;constitutive=1;rank=2 scaffold_215 . CDS 38247 38582 . - 0 ID=Physo144619;Parent=Physo144619;rank=1 scaffold_215 . exon 38247 38582 . - . ID=Physo144619.1;Parent=Physo144619;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_214 1 39009 scaffold_214 . repeat_region 1059 1083 . ? . description=trf scaffold_214 . repeat_region 1284 1292 . ? . description=dust scaffold_214 . repeat_region 1552 1560 . ? . description=dust scaffold_214 . repeat_region 2470 2762 . ? . description=dust scaffold_214 . repeat_region 3529 7768 . ? . description=dust scaffold_214 . repeat_region 9328 19505 . ? . description=dust scaffold_214 ensembl protein_coding_gene 7768 8016 . + . ID=Physo125175;biotype=protein_coding;external_name=estExt_Genewise1.C_2140001;logic_name=jgi_physo1_1 scaffold_214 ensembl transcript 7768 8016 . + . ID=Physo125175;Parent=Physo125175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_214 . exon 7768 8016 . + . ID=Physo125175.1;Parent=Physo125175;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_214 . CDS 7770 7823 . + 0 ID=Physo125175;Parent=Physo125175;rank=1 scaffold_214 ensembl protein_coding_gene 8005 8409 . + . ID=Physo125176;biotype=protein_coding;external_name=estExt_Genewise1.C_2140002;logic_name=jgi_physo1_1 scaffold_214 ensembl transcript 8005 8409 . + . ID=Physo125176;Parent=Physo125176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_214 . exon 8005 8409 . + . ID=Physo125176.1;Parent=Physo125176;constitutive=1;ensembl_phase=-1;rank=1 scaffold_214 . CDS 8014 8409 . + 0 ID=Physo125176;Parent=Physo125176;rank=1 scaffold_214 . repeat_region 19506 34375 . ? . description=dust scaffold_214 . biological_region 36579 36580 0.999 + . logic_name=eponine scaffold_214 . biological_region 37047 37049 0.999 + . logic_name=eponine scaffold_214 . biological_region 37067 37068 0.999 + . logic_name=eponine scaffold_214 . biological_region 37319 37321 0.999 + . logic_name=eponine scaffold_214 . repeat_region 37666 39007 . + . description=GypsyPi-1c_I-int scaffold_214 ensembl protein_coding_gene 36377 38823 . + . ID=Physo144618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2140001;logic_name=jgi_physo1_1 scaffold_214 ensembl transcript 36377 38823 . + . ID=Physo144618;Parent=Physo144618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_214 . CDS 36377 38422 . + 0 ID=Physo144618;Parent=Physo144618;rank=1 scaffold_214 . exon 36377 38422 . + . ID=Physo144618.1;Parent=Physo144618;constitutive=1;rank=1 scaffold_214 . CDS 38465 38821 . + 0 ID=Physo144618;Parent=Physo144618;rank=2 scaffold_214 . exon 38465 38823 . + . ID=Physo144618.2;Parent=Physo144618;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_213 1 40553 scaffold_213 . repeat_region 2 71 . + . description=Gypsy-2-I_PI-int scaffold_213 . repeat_region 72 1590 . + . description=Gypsy-2-I_PI-int scaffold_213 . repeat_region 1613 20277 . ? . description=dust scaffold_213 . repeat_region 1613 20277 . ? . description=dust scaffold_213 . repeat_region 20278 31328 . ? . description=dust scaffold_213 . repeat_region 32781 32830 . ? . description=trf scaffold_213 . repeat_region 33356 33436 . ? . description=trf scaffold_213 . repeat_region 33506 33568 . ? . description=trf scaffold_213 . repeat_region 35350 38454 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_211 1 40970 scaffold_211 . biological_region 506 509 0.999 + . logic_name=eponine scaffold_211 . biological_region 548 549 0.999 + . logic_name=eponine scaffold_211 . repeat_region 855 2694 . ? . description=dust scaffold_211 . biological_region 3282 3290 0.999 - . logic_name=eponine scaffold_211 . biological_region 4032 4037 0.999 + . logic_name=eponine scaffold_211 . biological_region 4072 4076 0.999 - . logic_name=eponine scaffold_211 . biological_region 4088 4092 0.999 - . logic_name=eponine scaffold_211 . biological_region 4106 4111 0.999 - . logic_name=eponine scaffold_211 . repeat_region 4109 4145 . ? . description=trf scaffold_211 . biological_region 4121 4121 0.999 - . logic_name=eponine scaffold_211 . repeat_region 4833 6291 . ? . description=dust scaffold_211 . biological_region 7129 7131 0.999 - . logic_name=eponine scaffold_211 . repeat_region 7219 8530 . ? . description=dust scaffold_211 ensembl protein_coding_gene 3152 4697 . + . ID=Physo144608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2110001;logic_name=jgi_physo1_1 scaffold_211 ensembl transcript 3152 4697 . + . ID=Physo144608;Parent=Physo144608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_211 . CDS 3152 4382 . + 0 ID=Physo144608;Parent=Physo144608;rank=1 scaffold_211 . exon 3152 4382 . + . ID=Physo144608.1;Parent=Physo144608;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_211 . CDS 4441 4697 . + 0 ID=Physo144608;Parent=Physo144608;rank=2 scaffold_211 . exon 4441 4697 . + . ID=Physo144608.2;Parent=Physo144608;constitutive=1;ensembl_phase=1;rank=2 scaffold_211 ensembl protein_coding_gene 6407 9128 . + . ID=Physo144609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2110002;logic_name=jgi_physo1_1 scaffold_211 ensembl transcript 6407 9128 . + . ID=Physo144609;Parent=Physo144609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_211 . CDS 6407 6454 . + 0 ID=Physo144609;Parent=Physo144609;rank=1 scaffold_211 . exon 6407 6454 . + . ID=Physo144609.1;Parent=Physo144609;constitutive=1;rank=1 scaffold_211 . CDS 6530 7142 . + 0 ID=Physo144609;Parent=Physo144609;rank=2 scaffold_211 . exon 6530 7142 . + . ID=Physo144609.2;Parent=Physo144609;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_211 . CDS 8599 9128 . + 0 ID=Physo144609;Parent=Physo144609;rank=3 scaffold_211 ensembl protein_coding_gene 12853 14454 . + . ID=Physo109656;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2110001;logic_name=jgi_physo1_1 scaffold_211 ensembl transcript 12853 14454 . + . ID=Physo109656;Parent=Physo109656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_211 . CDS 12853 14454 . + 0 ID=Physo109656;Parent=Physo109656;rank=1 scaffold_211 . exon 12853 14454 . + . ID=Physo109656.1;Parent=Physo109656;constitutive=1;rank=1 scaffold_211 . exon 8599 9128 . + . ID=Physo144609.3;Parent=Physo144609;constitutive=1;ensembl_phase=1;rank=3 scaffold_211 . repeat_region 16582 16604 . ? . description=trf scaffold_211 . repeat_region 17235 17307 . ? . description=dust scaffold_211 . repeat_region 17236 17315 . ? . description=trf scaffold_211 . repeat_region 17243 17307 . ? . description=trf scaffold_211 . repeat_region 17502 17534 . ? . description=trf scaffold_211 . biological_region 18344 18345 0.999 - . logic_name=eponine scaffold_211 . biological_region 19050 19055 0.999 + . logic_name=eponine scaffold_211 . repeat_region 19075 19139 . ? . description=trf scaffold_211 . biological_region 19151 19159 0.999 - . logic_name=eponine scaffold_211 . biological_region 19220 19222 0.999 - . logic_name=eponine scaffold_211 . biological_region 19226 19230 0.999 - . logic_name=eponine scaffold_211 . biological_region 19282 19285 0.999 + . logic_name=eponine scaffold_211 ensembl protein_coding_gene 17307 23959 . + . ID=Physo144611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2110004;logic_name=jgi_physo1_1 scaffold_211 ensembl transcript 17307 23959 . + . ID=Physo144611;Parent=Physo144611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_211 . CDS 17307 19232 . + 0 ID=Physo144611;Parent=Physo144611;rank=1 scaffold_211 . exon 17307 19232 . + . ID=Physo144611.1;Parent=Physo144611;constitutive=1;rank=1 scaffold_211 . CDS 19314 19682 . + 0 ID=Physo144611;Parent=Physo144611;rank=2 scaffold_211 . exon 19314 19682 . + . ID=Physo144611.2;Parent=Physo144611;constitutive=1;rank=2 scaffold_211 . CDS 19754 20226 . + 0 ID=Physo144611;Parent=Physo144611;rank=3 scaffold_211 . exon 19754 20226 . + . ID=Physo144611.3;Parent=Physo144611;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_211 . CDS 20470 20567 . + 0 ID=Physo144611;Parent=Physo144611;rank=4 scaffold_211 . exon 20470 20567 . + . ID=Physo144611.4;Parent=Physo144611;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_211 . CDS 20663 23158 . + 0 ID=Physo144611;Parent=Physo144611;rank=5 scaffold_211 . exon 20663 23158 . + . ID=Physo144611.5;Parent=Physo144611;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_211 . CDS 23559 23959 . + 0 ID=Physo144611;Parent=Physo144611;rank=6 scaffold_211 . exon 23559 23959 . + . ID=Physo144611.6;Parent=Physo144611;constitutive=1;ensembl_phase=1;rank=6 scaffold_211 ensembl protein_coding_gene 32451 33801 . + . ID=Physo144612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2110005;logic_name=jgi_physo1_1 scaffold_211 ensembl transcript 32451 33801 . + . ID=Physo144612;Parent=Physo144612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_211 . CDS 32451 32531 . + 0 ID=Physo144612;Parent=Physo144612;rank=1 scaffold_211 . exon 32451 32531 . + . ID=Physo144612.1;Parent=Physo144612;constitutive=1;rank=1 scaffold_211 . CDS 32601 33209 . + 0 ID=Physo144612;Parent=Physo144612;rank=2 scaffold_211 . exon 32601 33209 . + . ID=Physo144612.2;Parent=Physo144612;constitutive=1;rank=2 scaffold_211 . CDS 33235 33801 . + 0 ID=Physo144612;Parent=Physo144612;rank=3 scaffold_211 . exon 33235 33801 . + . ID=Physo144612.3;Parent=Physo144612;constitutive=1;rank=3 scaffold_211 ensembl protein_coding_gene 34084 35274 . - . ID=Physo144613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2110006;logic_name=jgi_physo1_1 scaffold_211 ensembl transcript 34084 35274 . - . ID=Physo144613;Parent=Physo144613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_211 . CDS 34084 35274 . - 0 ID=Physo144613;Parent=Physo144613;rank=1 scaffold_211 . exon 34084 35274 . - . ID=Physo144613.1;Parent=Physo144613;constitutive=1;rank=1 scaffold_211 ensembl protein_coding_gene 37208 38833 . + . ID=Physo144614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2110007;logic_name=jgi_physo1_1 scaffold_211 ensembl transcript 37208 38833 . + . ID=Physo144614;Parent=Physo144614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_211 . CDS 37208 37269 . + 0 ID=Physo144614;Parent=Physo144614;rank=1 scaffold_211 . exon 37208 37269 . + . ID=Physo144614.1;Parent=Physo144614;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_211 . CDS 37546 38034 . + 0 ID=Physo144614;Parent=Physo144614;rank=2 scaffold_211 . exon 37546 38034 . + . ID=Physo144614.2;Parent=Physo144614;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_211 . CDS 38224 38833 . + 0 ID=Physo144614;Parent=Physo144614;rank=3 scaffold_211 . exon 38224 38833 . + . ID=Physo144614.3;Parent=Physo144614;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_212 1 41293 scaffold_212 . repeat_region 1437 2472 . - . description=Polinton-1_PI scaffold_212 . repeat_region 2920 2986 . + . description=Polinton-1_PI scaffold_212 . repeat_region 3002 3186 . + . description=Polinton-1_PI scaffold_212 . biological_region 5069 5069 0.999 - . logic_name=eponine scaffold_212 . biological_region 7799 7801 0.999 + . logic_name=eponine scaffold_212 . biological_region 8144 8144 0.999 - . logic_name=eponine scaffold_212 ensembl protein_coding_gene 503 1390 . - . ID=Physo144615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2120001;logic_name=jgi_physo1_1 scaffold_212 ensembl transcript 503 1390 . - . ID=Physo144615;Parent=Physo144615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_212 . CDS 503 913 . - 0 ID=Physo144615;Parent=Physo144615;rank=3 scaffold_212 . exon 503 913 . - . ID=Physo144615.3;Parent=Physo144615;constitutive=1;rank=3 scaffold_212 . CDS 983 1189 . - 0 ID=Physo144615;Parent=Physo144615;rank=2 scaffold_212 . exon 983 1189 . - . ID=Physo144615.2;Parent=Physo144615;constitutive=1;rank=2 scaffold_212 . CDS 1310 1390 . - 0 ID=Physo144615;Parent=Physo144615;rank=1 scaffold_212 . exon 1310 1390 . - . ID=Physo144615.1;Parent=Physo144615;constitutive=1;rank=1 scaffold_212 ensembl protein_coding_gene 3241 6133 . + . ID=Physo144616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2120002;logic_name=jgi_physo1_1 scaffold_212 ensembl transcript 3241 6133 . + . ID=Physo144616;Parent=Physo144616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_212 . CDS 3241 3455 . + 0 ID=Physo144616;Parent=Physo144616;rank=1 scaffold_212 . exon 3241 3455 . + . ID=Physo144616.1;Parent=Physo144616;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_212 . CDS 3722 3885 . + 0 ID=Physo144616;Parent=Physo144616;rank=2 scaffold_212 . exon 3722 3885 . + . ID=Physo144616.2;Parent=Physo144616;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_212 . CDS 4057 4069 . + 0 ID=Physo144616;Parent=Physo144616;rank=3 scaffold_212 . exon 4057 4069 . + . ID=Physo144616.3;Parent=Physo144616;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_212 . CDS 4122 5115 . + 0 ID=Physo144616;Parent=Physo144616;rank=4 scaffold_212 . exon 4122 5115 . + . ID=Physo144616.4;Parent=Physo144616;constitutive=1;ensembl_phase=2;rank=4 scaffold_212 . CDS 5463 5482 . + 0 ID=Physo144616;Parent=Physo144616;rank=5 scaffold_212 . exon 5463 5482 . + . ID=Physo144616.5;Parent=Physo144616;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_212 . CDS 5545 6133 . + 0 ID=Physo144616;Parent=Physo144616;rank=6 scaffold_212 . exon 5545 6133 . + . ID=Physo144616.6;Parent=Physo144616;constitutive=1;ensembl_phase=2;rank=6 scaffold_212 ensembl protein_coding_gene 7464 9677 . + . ID=Physo144617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2120003;logic_name=jgi_physo1_1 scaffold_212 ensembl transcript 7464 9677 . + . ID=Physo144617;Parent=Physo144617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_212 . CDS 7464 8034 . + 0 ID=Physo144617;Parent=Physo144617;rank=1 scaffold_212 . exon 7464 8034 . + . ID=Physo144617.1;Parent=Physo144617;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_212 . CDS 8206 8650 . + 0 ID=Physo144617;Parent=Physo144617;rank=2 scaffold_212 . exon 8206 8650 . + . ID=Physo144617.2;Parent=Physo144617;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_212 . CDS 8960 9099 . + 0 ID=Physo144617;Parent=Physo144617;rank=3 scaffold_212 . CDS 9237 9354 . + 0 ID=Physo144617;Parent=Physo144617;rank=4 scaffold_212 . CDS 9422 9677 . + 0 ID=Physo144617;Parent=Physo144617;rank=5 scaffold_212 . repeat_region 11186 11233 . ? . description=trf scaffold_212 . repeat_region 11595 20647 . ? . description=dust scaffold_212 . exon 8960 9099 . + . ID=Physo144617.3;Parent=Physo144617;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_212 . exon 9237 9354 . + . ID=Physo144617.4;Parent=Physo144617;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_212 . exon 9422 9677 . + . ID=Physo144617.5;Parent=Physo144617;constitutive=1;ensembl_phase=2;rank=5 scaffold_212 . repeat_region 20648 39745 . ? . description=dust scaffold_212 ensembl protein_coding_gene 40309 41154 . - . ID=Physo125174;biotype=protein_coding;external_name=estExt_Genewise1.C_2120003;logic_name=jgi_physo1_1 scaffold_212 ensembl transcript 40309 41154 . - . ID=Physo125174;Parent=Physo125174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_212 . CDS 40309 40510 . - 0 ID=Physo125174;Parent=Physo125174;rank=2 scaffold_212 . exon 40309 40510 . - . ID=Physo125174.2;Parent=Physo125174;constitutive=1;ensembl_phase=2;rank=2 scaffold_212 . CDS 40532 41154 . - 0 ID=Physo125174;Parent=Physo125174;rank=1 scaffold_212 . exon 40532 41154 . - . ID=Physo125174.1;Parent=Physo125174;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_210 1 41789 scaffold_210 . repeat_region 743 6118 . ? . description=dust scaffold_210 . repeat_region 7369 8930 . ? . description=dust scaffold_210 . repeat_region 9177 9240 . ? . description=trf scaffold_210 . repeat_region 9899 20895 . ? . description=dust scaffold_210 . repeat_region 20896 40092 . ? . description=dust scaffold_210 . repeat_region 20896 40092 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_209 1 42078 scaffold_209 . repeat_region 2187 3345 . ? . description=dust scaffold_209 . biological_region 5146 5147 0.999 + . logic_name=eponine scaffold_209 . biological_region 5467 5470 0.999 - . logic_name=eponine scaffold_209 . biological_region 5967 5972 0.999 + . logic_name=eponine scaffold_209 . biological_region 6080 6084 0.999 - . logic_name=eponine scaffold_209 . biological_region 6342 6348 0.999 + . logic_name=eponine scaffold_209 . biological_region 6353 6354 0.999 - . logic_name=eponine scaffold_209 . biological_region 6406 6412 0.999 + . logic_name=eponine scaffold_209 . biological_region 6615 6617 0.999 + . logic_name=eponine scaffold_209 . biological_region 6809 6812 0.999 - . logic_name=eponine scaffold_209 ensembl protein_coding_gene 131 1223 . + . ID=Physo144604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2090001;logic_name=jgi_physo1_1 scaffold_209 ensembl transcript 131 1223 . + . ID=Physo144604;Parent=Physo144604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_209 . exon 131 1223 . + . ID=Physo144604.1;Parent=Physo144604;constitutive=1;ensembl_phase=-1;rank=1 scaffold_209 . CDS 408 1223 . + 0 ID=Physo144604;Parent=Physo144604;rank=1 scaffold_209 ensembl protein_coding_gene 3346 3753 . + . ID=Physo144605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2090002;logic_name=jgi_physo1_1 scaffold_209 ensembl transcript 3346 3753 . + . ID=Physo144605;Parent=Physo144605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_209 . CDS 3346 3753 . + 0 ID=Physo144605;Parent=Physo144605;rank=1 scaffold_209 . exon 3346 3753 . + . ID=Physo144605.1;Parent=Physo144605;constitutive=1;rank=1 scaffold_209 ensembl protein_coding_gene 4233 6273 . - . ID=Physo144606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2090003;logic_name=jgi_physo1_1 scaffold_209 ensembl transcript 4233 6273 . - . ID=Physo144606;Parent=Physo144606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_209 . exon 4233 5471 . - . ID=Physo144606.3;Parent=Physo144606;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_209 . CDS 4437 5471 . - 0 ID=Physo144606;Parent=Physo144606;rank=3 scaffold_209 . CDS 5513 5794 . - 0 ID=Physo144606;Parent=Physo144606;rank=2 scaffold_209 . exon 5513 5794 . - . ID=Physo144606.2;Parent=Physo144606;constitutive=1;rank=2 scaffold_209 . CDS 5890 6123 . - 0 ID=Physo144606;Parent=Physo144606;rank=1 scaffold_209 . exon 5890 6273 . - . ID=Physo144606.1;Parent=Physo144606;constitutive=1;ensembl_phase=-1;rank=1 scaffold_209 ensembl protein_coding_gene 11272 12771 . + . ID=Physo125159;biotype=protein_coding;external_name=estExt_Genewise1.C_2090001;logic_name=jgi_physo1_1 scaffold_209 ensembl transcript 11272 12771 . + . ID=Physo125159;Parent=Physo125159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_209 . exon 11272 11367 . + . ID=Physo125159.1;Parent=Physo125159;constitutive=1;ensembl_phase=-1;rank=1 scaffold_209 . CDS 11299 11367 . + 0 ID=Physo125159;Parent=Physo125159;rank=1 scaffold_209 . CDS 11446 12771 . + 0 ID=Physo125159;Parent=Physo125159;rank=2 scaffold_209 . exon 11446 12771 . + . ID=Physo125159.2;Parent=Physo125159;constitutive=1;rank=2 scaffold_209 ensembl protein_coding_gene 8907 9816 . + . ID=Physo144607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2090004;logic_name=jgi_physo1_1 scaffold_209 ensembl transcript 8907 9816 . + . ID=Physo144607;Parent=Physo144607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_209 . CDS 8907 9314 . + 0 ID=Physo144607;Parent=Physo144607;rank=1 scaffold_209 . exon 8907 9314 . + . ID=Physo144607.1;Parent=Physo144607;constitutive=1;rank=1 scaffold_209 . CDS 9386 9508 . + 0 ID=Physo144607;Parent=Physo144607;rank=2 scaffold_209 . exon 9386 9508 . + . ID=Physo144607.2;Parent=Physo144607;constitutive=1;rank=2 scaffold_209 . CDS 9583 9816 . + 0 ID=Physo144607;Parent=Physo144607;rank=3 scaffold_209 . exon 9583 9816 . + . ID=Physo144607.3;Parent=Physo144607;constitutive=1;rank=3 scaffold_209 . repeat_region 15706 21040 . ? . description=dust scaffold_209 . repeat_region 21041 41053 . ? . description=dust scaffold_209 . repeat_region 21041 41053 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_187 1 43042 scaffold_187 . repeat_region 171 250 . ? . description=trf scaffold_187 . biological_region 366 370 0.999 - . logic_name=eponine scaffold_187 . biological_region 423 424 0.999 + . logic_name=eponine scaffold_187 . biological_region 454 456 0.999 + . logic_name=eponine scaffold_187 . repeat_region 462 535 . ? . description=trf scaffold_187 . biological_region 571 577 0.999 - . logic_name=eponine scaffold_187 . repeat_region 603 667 . ? . description=trf scaffold_187 . biological_region 646 648 0.999 - . logic_name=eponine scaffold_187 . repeat_region 663 721 . ? . description=trf scaffold_187 . repeat_region 1509 1606 . + . description=(CA)n scaffold_187 . repeat_region 1523 1606 . ? . description=dust scaffold_187 . repeat_region 1523 1606 . ? . description=trf scaffold_187 . repeat_region 2074 2153 . ? . description=trf scaffold_187 . biological_region 2173 2176 0.999 - . logic_name=eponine scaffold_187 . repeat_region 2314 2340 . ? . description=trf scaffold_187 . repeat_region 2668 2707 . ? . description=trf scaffold_187 . repeat_region 3191 3270 . ? . description=trf scaffold_187 . biological_region 3386 3390 0.999 - . logic_name=eponine scaffold_187 . biological_region 3443 3444 0.999 + . logic_name=eponine scaffold_187 . biological_region 3474 3477 0.999 + . logic_name=eponine scaffold_187 . repeat_region 3482 3568 . ? . description=trf scaffold_187 . biological_region 3591 3597 0.999 - . logic_name=eponine scaffold_187 . repeat_region 3623 3687 . ? . description=trf scaffold_187 . repeat_region 4522 4543 . ? . description=dust scaffold_187 . repeat_region 4522 4543 . ? . description=trf scaffold_187 . biological_region 8332 8334 0.999 + . logic_name=eponine scaffold_187 ensembl protein_coding_gene 8320 9367 . - . ID=Physo109635;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1870001;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 8320 9367 . - . ID=Physo109635;Parent=Physo109635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . exon 8320 8565 . - . ID=Physo109635.2;Parent=Physo109635;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_187 . CDS 8415 8565 . - 0 ID=Physo109635;Parent=Physo109635;rank=2 scaffold_187 . CDS 8655 9367 . - 0 ID=Physo109635;Parent=Physo109635;rank=1 scaffold_187 ensembl protein_coding_gene 77 970 . - . ID=Physo144433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870001;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 77 970 . - . ID=Physo144433;Parent=Physo144433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 77 970 . - 0 ID=Physo144433;Parent=Physo144433;rank=1 scaffold_187 . exon 77 970 . - . ID=Physo144433.1;Parent=Physo144433;constitutive=1;rank=1 scaffold_187 ensembl protein_coding_gene 1915 2292 . + . ID=Physo144434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870002;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 1915 2292 . + . ID=Physo144434;Parent=Physo144434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 1915 2292 . + 0 ID=Physo144434;Parent=Physo144434;rank=1 scaffold_187 . exon 1915 2292 . + . ID=Physo144434.1;Parent=Physo144434;constitutive=1;rank=1 scaffold_187 ensembl protein_coding_gene 3097 3969 . - . ID=Physo144435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870003;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 3097 3969 . - . ID=Physo144435;Parent=Physo144435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 3097 3969 . - 0 ID=Physo144435;Parent=Physo144435;rank=1 scaffold_187 . exon 3097 3969 . - . ID=Physo144435.1;Parent=Physo144435;constitutive=1;rank=1 scaffold_187 ensembl protein_coding_gene 5214 8288 . - . ID=Physo144436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870004;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 5214 8288 . - . ID=Physo144436;Parent=Physo144436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 5214 5653 . - 0 ID=Physo144436;Parent=Physo144436;rank=7 scaffold_187 . exon 5214 5653 . - . ID=Physo144436.7;Parent=Physo144436;constitutive=1;ensembl_phase=1;rank=7 scaffold_187 . CDS 5874 6560 . - 0 ID=Physo144436;Parent=Physo144436;rank=6 scaffold_187 . exon 5874 6560 . - . ID=Physo144436.6;Parent=Physo144436;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_187 . CDS 6632 7073 . - 0 ID=Physo144436;Parent=Physo144436;rank=5 scaffold_187 . exon 6632 7073 . - . ID=Physo144436.5;Parent=Physo144436;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_187 . CDS 7459 7556 . - 0 ID=Physo144436;Parent=Physo144436;rank=4 scaffold_187 . exon 7459 7556 . - . ID=Physo144436.4;Parent=Physo144436;constitutive=1;ensembl_phase=1;rank=4 scaffold_187 . CDS 7628 7795 . - 0 ID=Physo144436;Parent=Physo144436;rank=3 scaffold_187 . exon 7628 7795 . - . ID=Physo144436.3;Parent=Physo144436;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_187 . CDS 7869 8021 . - 0 ID=Physo144436;Parent=Physo144436;rank=2 scaffold_187 . exon 7869 8021 . - . ID=Physo144436.2;Parent=Physo144436;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_187 . CDS 8099 8288 . - 0 ID=Physo144436;Parent=Physo144436;rank=1 scaffold_187 . exon 8099 8288 . - . ID=Physo144436.1;Parent=Physo144436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_187 . exon 8655 9367 . - . ID=Physo109635.1;Parent=Physo109635;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_187 . repeat_region 17372 17416 . ? . description=trf scaffold_187 . repeat_region 17931 17943 . ? . description=dust scaffold_187 . biological_region 19349 19351 0.999 + . logic_name=eponine scaffold_187 . biological_region 19681 19683 0.999 - . logic_name=eponine scaffold_187 . biological_region 19746 19749 0.999 - . logic_name=eponine scaffold_187 . biological_region 19812 19815 0.999 - . logic_name=eponine scaffold_187 . biological_region 19884 19888 0.999 - . logic_name=eponine scaffold_187 . biological_region 19905 19909 0.999 + . logic_name=eponine scaffold_187 . biological_region 20720 20720 0.999 + . logic_name=eponine scaffold_187 . biological_region 21428 21431 0.999 - . logic_name=eponine scaffold_187 . biological_region 24497 24503 0.999 - . logic_name=eponine scaffold_187 . biological_region 24641 24644 0.999 - . logic_name=eponine scaffold_187 . biological_region 25207 25210 0.999 + . logic_name=eponine scaffold_187 ensembl protein_coding_gene 22775 24138 . - . ID=Physo109636;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1870002;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 22775 24138 . - . ID=Physo109636;Parent=Physo109636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 22775 22894 . - 0 ID=Physo109636;Parent=Physo109636;rank=5 scaffold_187 . exon 22775 22894 . - . ID=Physo109636.5;Parent=Physo109636;constitutive=1;rank=5 scaffold_187 . CDS 22964 23228 . - 0 ID=Physo109636;Parent=Physo109636;rank=4 scaffold_187 . exon 22964 23228 . - . ID=Physo109636.4;Parent=Physo109636;constitutive=1;ensembl_phase=2;rank=4 scaffold_187 . CDS 23300 23349 . - 0 ID=Physo109636;Parent=Physo109636;rank=3 scaffold_187 . exon 23300 23349 . - . ID=Physo109636.3;Parent=Physo109636;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_187 . CDS 23410 23906 . - 0 ID=Physo109636;Parent=Physo109636;rank=2 scaffold_187 . exon 23410 23906 . - . ID=Physo109636.2;Parent=Physo109636;constitutive=1;ensembl_phase=1;rank=2 scaffold_187 . CDS 23985 24138 . - 0 ID=Physo109636;Parent=Physo109636;rank=1 scaffold_187 . exon 23985 24138 . - . ID=Physo109636.1;Parent=Physo109636;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_187 ensembl protein_coding_gene 20116 21428 . - . ID=Physo144438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870006;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 20116 21428 . - . ID=Physo144438;Parent=Physo144438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 20116 20175 . - 0 ID=Physo144438;Parent=Physo144438;rank=5 scaffold_187 . exon 20116 20175 . - . ID=Physo144438.5;Parent=Physo144438;constitutive=1;rank=5 scaffold_187 . CDS 20248 20391 . - 0 ID=Physo144438;Parent=Physo144438;rank=4 scaffold_187 . exon 20248 20391 . - . ID=Physo144438.4;Parent=Physo144438;constitutive=1;rank=4 scaffold_187 . CDS 20456 20637 . - 0 ID=Physo144438;Parent=Physo144438;rank=3 scaffold_187 . exon 20456 20637 . - . ID=Physo144438.3;Parent=Physo144438;constitutive=1;ensembl_phase=1;rank=3 scaffold_187 . CDS 20710 21186 . - 0 ID=Physo144438;Parent=Physo144438;rank=2 scaffold_187 . exon 20710 21186 . - . ID=Physo144438.2;Parent=Physo144438;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_187 . CDS 21254 21428 . - 0 ID=Physo144438;Parent=Physo144438;rank=1 scaffold_187 . exon 21254 21428 . - . ID=Physo144438.1;Parent=Physo144438;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_187 ensembl protein_coding_gene 24283 25686 . + . ID=Physo144440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870008;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 24283 25686 . + . ID=Physo144440;Parent=Physo144440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 24283 24983 . + 0 ID=Physo144440;Parent=Physo144440;rank=1 scaffold_187 . exon 24283 24983 . + . ID=Physo144440.1;Parent=Physo144440;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_187 . CDS 25062 25096 . + 0 ID=Physo144440;Parent=Physo144440;rank=2 scaffold_187 . exon 25062 25096 . + . ID=Physo144440.2;Parent=Physo144440;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_187 . CDS 25181 25632 . + 0 ID=Physo144440;Parent=Physo144440;rank=3 scaffold_187 . exon 25181 25686 . + . ID=Physo144440.3;Parent=Physo144440;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_187 ensembl protein_coding_gene 25947 27371 . + . ID=Physo144441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870009;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 25947 27371 . + . ID=Physo144441;Parent=Physo144441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 25947 27371 . + 0 ID=Physo144441;Parent=Physo144441;rank=1 scaffold_187 . exon 25947 27371 . + . ID=Physo144441.1;Parent=Physo144441;constitutive=1;rank=1 scaffold_187 ensembl protein_coding_gene 29680 31084 . + . ID=Physo144442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870010;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 29680 31084 . + . ID=Physo144442;Parent=Physo144442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 29680 31020 . + 0 ID=Physo144442;Parent=Physo144442;rank=1 scaffold_187 . exon 29680 31020 . + . ID=Physo144442.1;Parent=Physo144442;constitutive=1;rank=1 scaffold_187 . CDS 31067 31084 . + 0 ID=Physo144442;Parent=Physo144442;rank=2 scaffold_187 . exon 31067 31084 . + . ID=Physo144442.2;Parent=Physo144442;constitutive=1;rank=2 scaffold_187 ensembl protein_coding_gene 31529 32185 . - . ID=Physo144443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870011;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 31529 32185 . - . ID=Physo144443;Parent=Physo144443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 31529 32185 . - 0 ID=Physo144443;Parent=Physo144443;rank=1 scaffold_187 . exon 31529 32185 . - . ID=Physo144443.1;Parent=Physo144443;constitutive=1;rank=1 scaffold_187 . repeat_region 35532 37614 . - . description=Gypsy-1-I_PI-int scaffold_187 . biological_region 38522 38529 0.999 - . logic_name=eponine scaffold_187 . biological_region 38656 38664 0.999 - . logic_name=eponine scaffold_187 . biological_region 38914 38918 0.999 - . logic_name=eponine scaffold_187 . repeat_region 39543 39676 . - . description=GypsyPi-1c_I-int scaffold_187 . repeat_region 40178 42416 . - . description=GypsyPi-1c_I-int scaffold_187 . repeat_region 42723 43003 . - . description=GypsyPi-1c_I-int scaffold_187 ensembl protein_coding_gene 40711 41076 . - . ID=Physo109637;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1870003;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 40711 41076 . - . ID=Physo109637;Parent=Physo109637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 40711 41076 . - 0 ID=Physo109637;Parent=Physo109637;rank=1 scaffold_187 . exon 40711 41076 . - . ID=Physo109637.1;Parent=Physo109637;constitutive=1;rank=1 scaffold_187 ensembl protein_coding_gene 38366 40197 . + . ID=Physo144444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870012;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 38366 40197 . + . ID=Physo144444;Parent=Physo144444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 38366 39706 . + 0 ID=Physo144444;Parent=Physo144444;rank=1 scaffold_187 . exon 38366 39706 . + . ID=Physo144444.1;Parent=Physo144444;constitutive=1;rank=1 scaffold_187 . CDS 39805 40197 . + 0 ID=Physo144444;Parent=Physo144444;rank=2 scaffold_187 . exon 39805 40197 . + . ID=Physo144444.2;Parent=Physo144444;constitutive=1;rank=2 scaffold_187 ensembl protein_coding_gene 41224 42321 . - . ID=Physo144446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1870014;logic_name=jgi_physo1_1 scaffold_187 ensembl transcript 41224 42321 . - . ID=Physo144446;Parent=Physo144446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_187 . CDS 41224 42321 . - 0 ID=Physo144446;Parent=Physo144446;rank=1 scaffold_187 . exon 41224 42321 . - . ID=Physo144446.1;Parent=Physo144446;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_208 1 43137 scaffold_208 . repeat_region 1 346 . ? . description=dust scaffold_208 . repeat_region 1 346 . ? . description=trf scaffold_208 . repeat_region 979 2337 . ? . description=dust scaffold_208 . repeat_region 3566 3597 . ? . description=trf scaffold_208 . repeat_region 3925 3968 . ? . description=trf scaffold_208 . repeat_region 3957 3997 . ? . description=trf scaffold_208 . repeat_region 4276 4287 . ? . description=dust scaffold_208 . biological_region 4472 4475 0.999 - . logic_name=eponine scaffold_208 . repeat_region 4560 4576 . ? . description=dust scaffold_208 . biological_region 4751 4754 0.999 - . logic_name=eponine scaffold_208 . repeat_region 4835 4877 . ? . description=trf scaffold_208 . repeat_region 5614 5639 . ? . description=trf scaffold_208 . repeat_region 5689 5697 . ? . description=dust scaffold_208 . repeat_region 8438 8446 . ? . description=dust scaffold_208 ensembl protein_coding_gene 337 3621 . - . ID=Physo144601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2080001;logic_name=jgi_physo1_1 scaffold_208 ensembl transcript 337 3621 . - . ID=Physo144601;Parent=Physo144601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_208 . CDS 337 862 . - 0 ID=Physo144601;Parent=Physo144601;rank=2 scaffold_208 . exon 337 862 . - . ID=Physo144601.2;Parent=Physo144601;constitutive=1;ensembl_phase=2;rank=2 scaffold_208 . CDS 2342 3621 . - 0 ID=Physo144601;Parent=Physo144601;rank=1 scaffold_208 . exon 2342 3621 . - . ID=Physo144601.1;Parent=Physo144601;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_208 ensembl protein_coding_gene 17217 21422 . + . ID=Physo144602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2080002;logic_name=jgi_physo1_1 scaffold_208 ensembl transcript 17217 21422 . + . ID=Physo144602;Parent=Physo144602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_208 . CDS 17217 17869 . + 0 ID=Physo144602;Parent=Physo144602;rank=1 scaffold_208 . exon 17217 17869 . + . ID=Physo144602.1;Parent=Physo144602;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_208 . CDS 18028 18797 . + 0 ID=Physo144602;Parent=Physo144602;rank=2 scaffold_208 . CDS 18820 19117 . + 0 ID=Physo144602;Parent=Physo144602;rank=3 scaffold_208 . CDS 19202 19573 . + 0 ID=Physo144602;Parent=Physo144602;rank=4 scaffold_208 . CDS 19672 20281 . + 0 ID=Physo144602;Parent=Physo144602;rank=5 scaffold_208 . CDS 20480 21327 . + 0 ID=Physo144602;Parent=Physo144602;rank=6 scaffold_208 . CDS 21419 21422 . + 0 ID=Physo144602;Parent=Physo144602;rank=7 scaffold_208 . repeat_region 17952 18006 . ? . description=trf scaffold_208 . biological_region 18270 18273 0.999 - . logic_name=eponine scaffold_208 . biological_region 18671 18676 0.999 - . logic_name=eponine scaffold_208 . biological_region 19070 19073 0.999 + . logic_name=eponine scaffold_208 . biological_region 19106 19113 0.999 + . logic_name=eponine scaffold_208 . biological_region 19142 19144 0.999 + . logic_name=eponine scaffold_208 . biological_region 19184 19192 0.999 + . logic_name=eponine scaffold_208 . biological_region 19232 19239 0.999 - . logic_name=eponine scaffold_208 . biological_region 19280 19282 0.999 - . logic_name=eponine scaffold_208 . biological_region 19295 19300 0.999 - . logic_name=eponine scaffold_208 . biological_region 19813 19814 0.999 - . logic_name=eponine scaffold_208 . biological_region 20621 20623 0.999 - . logic_name=eponine scaffold_208 . repeat_region 20862 20904 . ? . description=trf scaffold_208 . biological_region 21128 21133 0.999 + . logic_name=eponine scaffold_208 . repeat_region 21748 23922 . ? . description=dust scaffold_208 . biological_region 24175 24180 0.999 + . logic_name=eponine scaffold_208 . biological_region 24185 24189 0.999 - . logic_name=eponine scaffold_208 . biological_region 24222 24230 0.999 - . logic_name=eponine scaffold_208 . biological_region 24238 24244 0.999 + . logic_name=eponine scaffold_208 . repeat_region 24916 24923 . ? . description=dust scaffold_208 . biological_region 25428 25428 0.999 - . logic_name=eponine scaffold_208 . biological_region 25487 25488 0.999 + . logic_name=eponine scaffold_208 . repeat_region 25795 25802 . ? . description=dust scaffold_208 ensembl protein_coding_gene 23931 24275 . + . ID=Physo125156;biotype=protein_coding;external_name=estExt_Genewise1.C_2080002;logic_name=jgi_physo1_1 scaffold_208 ensembl transcript 23931 24275 . + . ID=Physo125156;Parent=Physo125156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_208 . exon 23931 24275 . + . ID=Physo125156.1;Parent=Physo125156;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_208 . CDS 23933 24274 . + 0 ID=Physo125156;Parent=Physo125156;rank=1 scaffold_208 . exon 18028 18797 . + . ID=Physo144602.2;Parent=Physo144602;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_208 . exon 18820 19117 . + . ID=Physo144602.3;Parent=Physo144602;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_208 . exon 19202 19573 . + . ID=Physo144602.4;Parent=Physo144602;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_208 . exon 19672 20281 . + . ID=Physo144602.5;Parent=Physo144602;constitutive=1;ensembl_phase=2;rank=5 scaffold_208 . exon 20480 21327 . + . ID=Physo144602.6;Parent=Physo144602;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_208 . exon 21419 21422 . + . ID=Physo144602.7;Parent=Physo144602;constitutive=1;ensembl_phase=2;rank=7 scaffold_208 . repeat_region 37652 37659 . ? . description=dust scaffold_208 ensembl protein_coding_gene 39414 42973 . + . ID=Physo144603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2080003;logic_name=jgi_physo1_1 scaffold_208 ensembl transcript 39414 42973 . + . ID=Physo144603;Parent=Physo144603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_208 . CDS 39414 39479 . + 0 ID=Physo144603;Parent=Physo144603;rank=1 scaffold_208 . exon 39414 39479 . + . ID=Physo144603.1;Parent=Physo144603;constitutive=1;rank=1 scaffold_208 . CDS 39535 39575 . + 0 ID=Physo144603;Parent=Physo144603;rank=2 scaffold_208 . exon 39535 39575 . + . ID=Physo144603.2;Parent=Physo144603;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_208 . CDS 39638 41098 . + 0 ID=Physo144603;Parent=Physo144603;rank=3 scaffold_208 . exon 39638 41098 . + . ID=Physo144603.3;Parent=Physo144603;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_208 . CDS 41133 41249 . + 0 ID=Physo144603;Parent=Physo144603;rank=4 scaffold_208 . exon 41133 41249 . + . ID=Physo144603.4;Parent=Physo144603;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_208 . CDS 41379 41613 . + 0 ID=Physo144603;Parent=Physo144603;rank=5 scaffold_208 . exon 41379 41613 . + . ID=Physo144603.5;Parent=Physo144603;constitutive=1;ensembl_phase=2;rank=5 scaffold_208 . CDS 41687 41828 . + 0 ID=Physo144603;Parent=Physo144603;rank=6 scaffold_208 . exon 41687 41828 . + . ID=Physo144603.6;Parent=Physo144603;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_208 . CDS 41865 42179 . + 0 ID=Physo144603;Parent=Physo144603;rank=7 scaffold_208 . exon 41865 42179 . + . ID=Physo144603.7;Parent=Physo144603;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_208 . CDS 42477 42973 . + 0 ID=Physo144603;Parent=Physo144603;rank=8 scaffold_208 . exon 42477 42973 . + . ID=Physo144603.8;Parent=Physo144603;constitutive=1;ensembl_phase=1;rank=8 ##gff-version 3 ##sequence-region scaffold_207 1 43431 scaffold_207 . repeat_region 1449 2009 . ? . description=dust scaffold_207 . repeat_region 4152 21716 . ? . description=dust scaffold_207 . repeat_region 4152 21716 . ? . description=dust scaffold_207 . repeat_region 21717 28100 . ? . description=dust scaffold_207 . repeat_region 29924 29972 . ? . description=trf scaffold_207 . repeat_region 30079 30120 . ? . description=trf scaffold_207 . repeat_region 39434 39664 . ? . description=dust scaffold_207 . repeat_region 40772 41921 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_206 1 45109 scaffold_206 . biological_region 961 965 0.999 - . logic_name=eponine scaffold_206 . repeat_region 2359 2366 . ? . description=dust scaffold_206 . biological_region 3531 3534 0.999 + . logic_name=eponine scaffold_206 . biological_region 3669 3672 0.999 - . logic_name=eponine scaffold_206 . biological_region 3728 3731 0.999 - . logic_name=eponine scaffold_206 . biological_region 4018 4026 0.999 + . logic_name=eponine scaffold_206 . biological_region 4078 4078 0.999 - . logic_name=eponine scaffold_206 . biological_region 4205 4209 0.999 - . logic_name=eponine scaffold_206 . biological_region 4649 4654 0.999 + . logic_name=eponine scaffold_206 . biological_region 4653 4661 0.999 - . logic_name=eponine scaffold_206 . biological_region 4828 4828 0.999 - . logic_name=eponine scaffold_206 . repeat_region 5523 22555 . ? . description=dust scaffold_206 ensembl protein_coding_gene 48 2496 . + . ID=Physo144599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2060001;logic_name=jgi_physo1_1 scaffold_206 ensembl transcript 48 2496 . + . ID=Physo144599;Parent=Physo144599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_206 . exon 48 153 . + . ID=Physo144599.1;Parent=Physo144599;constitutive=1;ensembl_phase=-1;rank=1 scaffold_206 . CDS 82 153 . + 0 ID=Physo144599;Parent=Physo144599;rank=1 scaffold_206 . CDS 217 285 . + 0 ID=Physo144599;Parent=Physo144599;rank=2 scaffold_206 . exon 217 285 . + . ID=Physo144599.2;Parent=Physo144599;constitutive=1;rank=2 scaffold_206 . CDS 808 913 . + 0 ID=Physo144599;Parent=Physo144599;rank=3 scaffold_206 . exon 808 913 . + . ID=Physo144599.3;Parent=Physo144599;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_206 . CDS 1238 1448 . + 0 ID=Physo144599;Parent=Physo144599;rank=4 scaffold_206 . exon 1238 1448 . + . ID=Physo144599.4;Parent=Physo144599;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_206 . CDS 1992 2340 . + 0 ID=Physo144599;Parent=Physo144599;rank=5 scaffold_206 . exon 1992 2340 . + . ID=Physo144599.5;Parent=Physo144599;constitutive=1;ensembl_phase=2;rank=5 scaffold_206 . CDS 2419 2496 . + 0 ID=Physo144599;Parent=Physo144599;rank=6 scaffold_206 . exon 2419 2496 . + . ID=Physo144599.6;Parent=Physo144599;constitutive=1;rank=6 scaffold_206 ensembl protein_coding_gene 2613 4221 . - . ID=Physo144600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2060002;logic_name=jgi_physo1_1 scaffold_206 ensembl transcript 2613 4221 . - . ID=Physo144600;Parent=Physo144600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_206 . exon 2613 4221 . - . ID=Physo144600.1;Parent=Physo144600;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_206 . CDS 2792 4180 . - 0 ID=Physo144600;Parent=Physo144600;rank=1 scaffold_206 . repeat_region 5523 22555 . ? . description=dust scaffold_206 . repeat_region 22556 34152 . ? . description=dust scaffold_206 . repeat_region 37116 37146 . ? . description=dust scaffold_206 . repeat_region 37117 37146 . ? . description=trf scaffold_206 . repeat_region 39163 42663 . ? . description=dust scaffold_206 . repeat_region 43897 43912 . ? . description=dust scaffold_206 . repeat_region 44851 44866 . ? . description=dust scaffold_206 ensembl protein_coding_gene 38159 38988 . - . ID=Physo125153;biotype=protein_coding;external_name=estExt_Genewise1.C_2060002;logic_name=jgi_physo1_1 scaffold_206 ensembl transcript 38159 38988 . - . ID=Physo125153;Parent=Physo125153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_206 . CDS 38159 38463 . - 0 ID=Physo125153;Parent=Physo125153;rank=3 scaffold_206 . exon 38159 38463 . - . ID=Physo125153.3;Parent=Physo125153;constitutive=1;ensembl_phase=1;rank=3 scaffold_206 . CDS 38475 38685 . - 0 ID=Physo125153;Parent=Physo125153;rank=2 scaffold_206 . exon 38475 38685 . - . ID=Physo125153.2;Parent=Physo125153;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_206 . CDS 38734 38778 . - 0 ID=Physo125153;Parent=Physo125153;rank=1 scaffold_206 . exon 38734 38988 . - . ID=Physo125153.1;Parent=Physo125153;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_205 1 45551 scaffold_205 . repeat_region 441 448 . ? . description=dust scaffold_205 . repeat_region 1617 1666 . ? . description=dust scaffold_205 . repeat_region 2597 2604 . ? . description=dust scaffold_205 . biological_region 5399 5401 0.999 + . logic_name=eponine scaffold_205 . biological_region 6272 6276 0.999 + . logic_name=eponine scaffold_205 . repeat_region 6809 6846 . ? . description=trf scaffold_205 ensembl protein_coding_gene 5532 7283 . - . ID=Physo144592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2050001;logic_name=jgi_physo1_1 scaffold_205 ensembl transcript 5532 7283 . - . ID=Physo144592;Parent=Physo144592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_205 . CDS 5532 5788 . - 0 ID=Physo144592;Parent=Physo144592;rank=3 scaffold_205 . exon 5532 5788 . - . ID=Physo144592.4;Parent=Physo144592;constitutive=1;ensembl_phase=1;rank=4 scaffold_205 . CDS 6074 6810 . - 0 ID=Physo144592;Parent=Physo144592;rank=2 scaffold_205 . exon 6074 6810 . - . ID=Physo144592.3;Parent=Physo144592;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_205 . CDS 7014 7099 . - 0 ID=Physo144592;Parent=Physo144592;rank=1 scaffold_205 . exon 7014 7192 . - . ID=Physo144592.2;Parent=Physo144592;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_205 . exon 7238 7283 . - . ID=Physo144592.1;Parent=Physo144592;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_205 ensembl protein_coding_gene 17275 18401 . - . ID=Physo109654;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2050001;logic_name=jgi_physo1_1 scaffold_205 ensembl transcript 17275 18401 . - . ID=Physo109654;Parent=Physo109654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_205 . CDS 17275 17324 . - 0 ID=Physo109654;Parent=Physo109654;rank=2 scaffold_205 . exon 17275 17324 . - . ID=Physo109654.2;Parent=Physo109654;constitutive=1;ensembl_phase=1;rank=2 scaffold_205 . CDS 17348 18401 . - 0 ID=Physo109654;Parent=Physo109654;rank=1 scaffold_205 . exon 17348 18401 . - . ID=Physo109654.1;Parent=Physo109654;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_205 ensembl protein_coding_gene 11978 13031 . + . ID=Physo144593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2050002;logic_name=jgi_physo1_1 scaffold_205 ensembl transcript 11978 13031 . + . ID=Physo144593;Parent=Physo144593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_205 . CDS 11978 12168 . + 0 ID=Physo144593;Parent=Physo144593;rank=1 scaffold_205 . exon 11978 12168 . + . ID=Physo144593.1;Parent=Physo144593;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_205 . CDS 12271 12523 . + 0 ID=Physo144593;Parent=Physo144593;rank=2 scaffold_205 . exon 12271 12523 . + . ID=Physo144593.2;Parent=Physo144593;constitutive=1;ensembl_phase=2;rank=2 scaffold_205 . CDS 12711 13031 . + 0 ID=Physo144593;Parent=Physo144593;rank=3 scaffold_205 . exon 12711 13031 . + . ID=Physo144593.3;Parent=Physo144593;constitutive=1;rank=3 scaffold_205 ensembl protein_coding_gene 13882 16942 . + . ID=Physo144594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2050003;logic_name=jgi_physo1_1 scaffold_205 ensembl transcript 13882 16942 . + . ID=Physo144594;Parent=Physo144594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_205 . CDS 13882 14785 . + 0 ID=Physo144594;Parent=Physo144594;rank=1 scaffold_205 . exon 13882 14785 . + . ID=Physo144594.1;Parent=Physo144594;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_205 . CDS 14837 15475 . + 0 ID=Physo144594;Parent=Physo144594;rank=2 scaffold_205 . exon 14837 15475 . + . ID=Physo144594.2;Parent=Physo144594;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_205 . CDS 15535 16016 . + 0 ID=Physo144594;Parent=Physo144594;rank=3 scaffold_205 . exon 15535 16016 . + . ID=Physo144594.3;Parent=Physo144594;constitutive=1;ensembl_phase=1;rank=3 scaffold_205 . CDS 16067 16942 . + 0 ID=Physo144594;Parent=Physo144594;rank=4 scaffold_205 . exon 16067 16942 . + . ID=Physo144594.4;Parent=Physo144594;constitutive=1;rank=4 scaffold_205 . biological_region 18295 18299 0.999 + . logic_name=eponine scaffold_205 . biological_region 18392 18394 0.999 - . logic_name=eponine scaffold_205 . repeat_region 19792 19996 . ? . description=dust scaffold_205 . biological_region 20805 20806 0.999 + . logic_name=eponine scaffold_205 . biological_region 21332 21335 0.999 - . logic_name=eponine scaffold_205 . repeat_region 22749 22776 . ? . description=dust scaffold_205 . repeat_region 22777 44519 . ? . description=dust scaffold_205 ensembl protein_coding_gene 19038 20379 . - . ID=Physo144596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2050005;logic_name=jgi_physo1_1 scaffold_205 ensembl transcript 19038 20379 . - . ID=Physo144596;Parent=Physo144596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_205 . CDS 19038 19714 . - 0 ID=Physo144596;Parent=Physo144596;rank=2 scaffold_205 . exon 19038 19714 . - . ID=Physo144596.2;Parent=Physo144596;constitutive=1;ensembl_phase=1;rank=2 scaffold_205 . CDS 20016 20379 . - 0 ID=Physo144596;Parent=Physo144596;rank=1 scaffold_205 . exon 20016 20379 . - . ID=Physo144596.1;Parent=Physo144596;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_205 ensembl protein_coding_gene 20722 22360 . + . ID=Physo144597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2050006;logic_name=jgi_physo1_1 scaffold_205 ensembl transcript 20722 22360 . + . ID=Physo144597;Parent=Physo144597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_205 . CDS 20722 21351 . + 0 ID=Physo144597;Parent=Physo144597;rank=1 scaffold_205 . exon 20722 21351 . + . ID=Physo144597.1;Parent=Physo144597;constitutive=1;rank=1 scaffold_205 . CDS 21489 21998 . + 0 ID=Physo144597;Parent=Physo144597;rank=2 scaffold_205 . exon 21489 21998 . + . ID=Physo144597.2;Parent=Physo144597;constitutive=1;rank=2 scaffold_205 . CDS 22106 22124 . + 0 ID=Physo144597;Parent=Physo144597;rank=3 scaffold_205 . exon 22106 22124 . + . ID=Physo144597.3;Parent=Physo144597;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_205 . CDS 22179 22360 . + 0 ID=Physo144597;Parent=Physo144597;rank=4 scaffold_205 . exon 22179 22360 . + . ID=Physo144597.4;Parent=Physo144597;constitutive=1;ensembl_phase=1;rank=4 scaffold_205 . repeat_region 22777 44519 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_204 1 45813 scaffold_204 . repeat_region 901 2244 . + . description=GypsyPi-1c_I-int scaffold_204 . repeat_region 1325 1348 . ? . description=trf scaffold_204 . biological_region 1651 1652 0.999 + . logic_name=eponine scaffold_204 . repeat_region 2232 2241 . ? . description=dust scaffold_204 . repeat_region 7636 7675 . ? . description=trf scaffold_204 . repeat_region 7648 7675 . ? . description=trf scaffold_204 . repeat_region 7652 7677 . ? . description=trf scaffold_204 . repeat_region 8125 8133 . ? . description=dust scaffold_204 . biological_region 8761 8769 0.999 - . logic_name=eponine scaffold_204 . repeat_region 8799 8812 . ? . description=dust scaffold_204 ensembl protein_coding_gene 1232 2051 . + . ID=Physo144585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2040001;logic_name=jgi_physo1_1 scaffold_204 ensembl transcript 1232 2051 . + . ID=Physo144585;Parent=Physo144585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_204 . CDS 1232 1314 . + 0 ID=Physo144585;Parent=Physo144585;rank=1 scaffold_204 . exon 1232 1314 . + . ID=Physo144585.1;Parent=Physo144585;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_204 . CDS 1464 1656 . + 0 ID=Physo144585;Parent=Physo144585;rank=2 scaffold_204 . exon 1464 1656 . + . ID=Physo144585.2;Parent=Physo144585;constitutive=1;ensembl_phase=2;rank=2 scaffold_204 . CDS 1725 2051 . + 0 ID=Physo144585;Parent=Physo144585;rank=3 scaffold_204 . exon 1725 2051 . + . ID=Physo144585.3;Parent=Physo144585;constitutive=1;rank=3 scaffold_204 ensembl protein_coding_gene 5052 5523 . - . ID=Physo144586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2040002;logic_name=jgi_physo1_1 scaffold_204 ensembl transcript 5052 5523 . - . ID=Physo144586;Parent=Physo144586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_204 . CDS 5052 5252 . - 0 ID=Physo144586;Parent=Physo144586;rank=2 scaffold_204 . exon 5052 5252 . - . ID=Physo144586.2;Parent=Physo144586;constitutive=1;rank=2 scaffold_204 . CDS 5314 5523 . - 0 ID=Physo144586;Parent=Physo144586;rank=1 scaffold_204 . exon 5314 5523 . - . ID=Physo144586.1;Parent=Physo144586;constitutive=1;rank=1 scaffold_204 ensembl protein_coding_gene 13841 14343 . + . ID=Physo125133;biotype=protein_coding;external_name=estExt_Genewise1.C_2040003;logic_name=jgi_physo1_1 scaffold_204 ensembl transcript 13841 14343 . + . ID=Physo125133;Parent=Physo125133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_204 . exon 13841 14343 . + . ID=Physo125133.1;Parent=Physo125133;constitutive=1;ensembl_phase=-1;rank=1 scaffold_204 . CDS 14017 14343 . + 0 ID=Physo125133;Parent=Physo125133;rank=1 scaffold_204 ensembl protein_coding_gene 10432 11775 . - . ID=Physo144587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2040003;logic_name=jgi_physo1_1 scaffold_204 ensembl transcript 10432 11775 . - . ID=Physo144587;Parent=Physo144587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_204 . CDS 10432 10627 . - 0 ID=Physo144587;Parent=Physo144587;rank=3 scaffold_204 . exon 10432 10627 . - . ID=Physo144587.3;Parent=Physo144587;constitutive=1;ensembl_phase=2;rank=3 scaffold_204 . CDS 10681 11680 . - 0 ID=Physo144587;Parent=Physo144587;rank=2 scaffold_204 . exon 10681 11680 . - . ID=Physo144587.2;Parent=Physo144587;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_204 . CDS 11712 11775 . - 0 ID=Physo144587;Parent=Physo144587;rank=1 scaffold_204 . exon 11712 11775 . - . ID=Physo144587.1;Parent=Physo144587;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_204 . repeat_region 14346 22503 . ? . description=dust scaffold_204 . repeat_region 23441 28368 . ? . description=dust scaffold_204 ensembl protein_coding_gene 22510 23415 . + . ID=Physo109653;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_2040001;logic_name=jgi_physo1_1 scaffold_204 ensembl transcript 22510 23415 . + . ID=Physo109653;Parent=Physo109653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_204 . CDS 22510 23415 . + 0 ID=Physo109653;Parent=Physo109653;rank=1 scaffold_204 . exon 22510 23415 . + . ID=Physo109653.1;Parent=Physo109653;constitutive=1;rank=1 scaffold_204 . biological_region 30251 30254 0.999 + . logic_name=eponine scaffold_204 . biological_region 30293 30293 0.999 - . logic_name=eponine scaffold_204 . biological_region 30373 30378 0.999 - . logic_name=eponine scaffold_204 . biological_region 31183 31183 0.999 + . logic_name=eponine scaffold_204 . biological_region 32044 32049 0.999 + . logic_name=eponine scaffold_204 . biological_region 32066 32070 0.999 + . logic_name=eponine scaffold_204 . repeat_region 36641 36695 . ? . description=trf scaffold_204 ensembl protein_coding_gene 29058 32198 . - . ID=Physo144589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2040005;logic_name=jgi_physo1_1 scaffold_204 ensembl transcript 29058 32198 . - . ID=Physo144589;Parent=Physo144589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_204 . CDS 29058 29198 . - 0 ID=Physo144589;Parent=Physo144589;rank=7 scaffold_204 . exon 29058 29198 . - . ID=Physo144589.7;Parent=Physo144589;constitutive=1;rank=7 scaffold_204 . CDS 29298 29806 . - 0 ID=Physo144589;Parent=Physo144589;rank=6 scaffold_204 . exon 29298 29806 . - . ID=Physo144589.6;Parent=Physo144589;constitutive=1;ensembl_phase=1;rank=6 scaffold_204 . CDS 29975 30582 . - 0 ID=Physo144589;Parent=Physo144589;rank=5 scaffold_204 . exon 29975 30582 . - . ID=Physo144589.5;Parent=Physo144589;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_204 . CDS 31231 31295 . - 0 ID=Physo144589;Parent=Physo144589;rank=4 scaffold_204 . exon 31231 31295 . - . ID=Physo144589.4;Parent=Physo144589;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_204 . CDS 31456 31770 . - 0 ID=Physo144589;Parent=Physo144589;rank=3 scaffold_204 . exon 31456 31770 . - . ID=Physo144589.3;Parent=Physo144589;constitutive=1;rank=3 scaffold_204 . CDS 31927 31951 . - 0 ID=Physo144589;Parent=Physo144589;rank=2 scaffold_204 . exon 31927 31951 . - . ID=Physo144589.2;Parent=Physo144589;constitutive=1;ensembl_phase=2;rank=2 scaffold_204 . CDS 32098 32189 . - 0 ID=Physo144589;Parent=Physo144589;rank=1 scaffold_204 . exon 32098 32198 . - . ID=Physo144589.1;Parent=Physo144589;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_204 . repeat_region 39638 44421 . - . description=GypsyPi-1c_I-int scaffold_204 . repeat_region 44434 44483 . ? . description=dust scaffold_204 ensembl protein_coding_gene 37318 39733 . + . ID=Physo144590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2040006;logic_name=jgi_physo1_1 scaffold_204 ensembl transcript 37318 39733 . + . ID=Physo144590;Parent=Physo144590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_204 . CDS 37318 39161 . + 0 ID=Physo144590;Parent=Physo144590;rank=1 scaffold_204 . exon 37318 39161 . + . ID=Physo144590.1;Parent=Physo144590;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_204 . CDS 39247 39397 . + 0 ID=Physo144590;Parent=Physo144590;rank=2 scaffold_204 . exon 39247 39397 . + . ID=Physo144590.2;Parent=Physo144590;constitutive=1;ensembl_phase=2;rank=2 scaffold_204 . CDS 39425 39733 . + 0 ID=Physo144590;Parent=Physo144590;rank=3 scaffold_204 . exon 39425 39733 . + . ID=Physo144590.3;Parent=Physo144590;constitutive=1;rank=3 scaffold_204 ensembl protein_coding_gene 39883 44354 . - . ID=Physo144591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2040007;logic_name=jgi_physo1_1 scaffold_204 ensembl transcript 39883 44354 . - . ID=Physo144591;Parent=Physo144591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_204 . CDS 39883 42027 . - 0 ID=Physo144591;Parent=Physo144591;rank=4 scaffold_204 . exon 39883 42027 . - . ID=Physo144591.4;Parent=Physo144591;constitutive=1;rank=4 scaffold_204 . CDS 42145 42213 . - 0 ID=Physo144591;Parent=Physo144591;rank=3 scaffold_204 . exon 42145 42213 . - . ID=Physo144591.3;Parent=Physo144591;constitutive=1;rank=3 scaffold_204 . CDS 42472 43535 . - 0 ID=Physo144591;Parent=Physo144591;rank=2 scaffold_204 . exon 42472 43535 . - . ID=Physo144591.2;Parent=Physo144591;constitutive=1;ensembl_phase=1;rank=2 scaffold_204 . CDS 43697 44354 . - 0 ID=Physo144591;Parent=Physo144591;rank=1 scaffold_204 . exon 43697 44354 . - . ID=Physo144591.1;Parent=Physo144591;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_203 1 46870 scaffold_203 . repeat_region 103 148 . - . description=Polinton-1_PI scaffold_203 . repeat_region 302 510 . - . description=Polinton-1_PI scaffold_203 . repeat_region 1283 6314 . ? . description=dust scaffold_203 . repeat_region 7338 23436 . ? . description=dust scaffold_203 ensembl protein_coding_gene 6319 6622 . - . ID=Physo125130;biotype=protein_coding;external_name=estExt_Genewise1.C_2030003;logic_name=jgi_physo1_1 scaffold_203 ensembl transcript 6319 6622 . - . ID=Physo125130;Parent=Physo125130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_203 . exon 6319 6622 . - . ID=Physo125130.1;Parent=Physo125130;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_203 . CDS 6490 6615 . - 0 ID=Physo125130;Parent=Physo125130;rank=1 scaffold_203 ensembl protein_coding_gene 1 483 . - . ID=Physo144583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2030001;logic_name=jgi_physo1_1 scaffold_203 ensembl transcript 1 483 . - . ID=Physo144583;Parent=Physo144583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_203 . exon 1 483 . - . ID=Physo144583.1;Parent=Physo144583;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_203 . CDS 2 466 . - 0 ID=Physo144583;Parent=Physo144583;rank=1 scaffold_203 . repeat_region 7338 23436 . ? . description=dust scaffold_203 . repeat_region 23437 33125 . ? . description=dust scaffold_203 . biological_region 33341 33346 0.999 - . logic_name=eponine scaffold_203 . biological_region 33705 33705 0.999 + . logic_name=eponine scaffold_203 ensembl protein_coding_gene 33369 34029 . - . ID=Physo144584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2030002;logic_name=jgi_physo1_1 scaffold_203 ensembl transcript 33369 34029 . - . ID=Physo144584;Parent=Physo144584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_203 . CDS 33369 33405 . - 0 ID=Physo144584;Parent=Physo144584;rank=2 scaffold_203 . exon 33369 33405 . - . ID=Physo144584.2;Parent=Physo144584;constitutive=1;ensembl_phase=2;rank=2 scaffold_203 . CDS 33443 34029 . - 0 ID=Physo144584;Parent=Physo144584;rank=1 scaffold_203 . exon 33443 34029 . - . ID=Physo144584.1;Parent=Physo144584;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_203 . repeat_region 36806 39506 . ? . description=dust scaffold_203 . repeat_region 41162 41175 . ? . description=dust scaffold_203 . repeat_region 41179 46107 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_202 1 49100 scaffold_202 . repeat_region 2548 2557 . ? . description=dust scaffold_202 . biological_region 4309 4309 0.999 + . logic_name=eponine scaffold_202 . repeat_region 5701 5737 . ? . description=dust scaffold_202 . repeat_region 5767 5804 . ? . description=trf scaffold_202 . biological_region 5825 5831 0.999 - . logic_name=eponine scaffold_202 . repeat_region 5947 5955 . ? . description=dust scaffold_202 . biological_region 5989 5993 0.999 + . logic_name=eponine scaffold_202 . repeat_region 6032 6101 . ? . description=trf scaffold_202 . biological_region 6101 6103 0.999 - . logic_name=eponine scaffold_202 . repeat_region 6254 6262 . ? . description=dust scaffold_202 . repeat_region 6506 6584 . ? . description=trf scaffold_202 . repeat_region 6506 6608 . ? . description=trf scaffold_202 . biological_region 6575 6576 0.999 + . logic_name=eponine scaffold_202 . biological_region 6579 6580 0.999 - . logic_name=eponine scaffold_202 . biological_region 6617 6619 0.999 + . logic_name=eponine scaffold_202 . biological_region 6668 6668 0.999 + . logic_name=eponine scaffold_202 . biological_region 6673 6675 0.999 - . logic_name=eponine scaffold_202 . biological_region 6758 6759 0.999 + . logic_name=eponine scaffold_202 . biological_region 6775 6779 0.999 - . logic_name=eponine scaffold_202 . biological_region 7197 7203 0.999 - . logic_name=eponine scaffold_202 . biological_region 7499 7501 0.999 + . logic_name=eponine scaffold_202 . biological_region 7557 7561 0.999 - . logic_name=eponine scaffold_202 . biological_region 7585 7585 0.999 + . logic_name=eponine scaffold_202 . biological_region 7803 7807 0.999 + . logic_name=eponine scaffold_202 . biological_region 7836 7837 0.999 + . logic_name=eponine scaffold_202 . biological_region 8167 8167 0.999 + . logic_name=eponine scaffold_202 . biological_region 9129 9131 0.999 + . logic_name=eponine scaffold_202 . biological_region 9218 9221 0.999 - . logic_name=eponine scaffold_202 . biological_region 9245 9245 0.999 - . logic_name=eponine scaffold_202 . biological_region 9298 9301 0.999 - . logic_name=eponine scaffold_202 . biological_region 9713 9718 0.999 - . logic_name=eponine scaffold_202 ensembl tRNA_gene 5578 5649 . - . ID=EPrPSOG00000000141;biotype=tRNA;description=tRNA-Asp for anticodon GUC [Source:TRNASCAN_SE%3BAcc:tRNA-Asp];external_name=tRNA-Asp;logic_name=ncrna_eg scaffold_202 ensembl transcript 5578 5649 . - . ID=EPrPSOT00000000141;Parent=EPrPSOG00000000141;biotype=tRNA;logic_name=ncrna_eg scaffold_202 . exon 5578 5649 . - . ID=EPrPSOE00000000141;Parent=EPrPSOT00000000141;constitutive=1;rank=1 scaffold_202 ensembl protein_coding_gene 8596 14831 . - . ID=Physo144582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2020001;logic_name=jgi_physo1_1 scaffold_202 ensembl transcript 8596 14831 . - . ID=Physo144582;Parent=Physo144582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_202 . CDS 8596 9008 . - 0 ID=Physo144582;Parent=Physo144582;rank=5 scaffold_202 . exon 8596 9008 . - . ID=Physo144582.5;Parent=Physo144582;constitutive=1;ensembl_phase=1;rank=5 scaffold_202 . CDS 9134 10417 . - 0 ID=Physo144582;Parent=Physo144582;rank=4 scaffold_202 . exon 9134 10417 . - . ID=Physo144582.4;Parent=Physo144582;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_202 . CDS 10502 13635 . - 0 ID=Physo144582;Parent=Physo144582;rank=3 scaffold_202 . CDS 13679 14705 . - 0 ID=Physo144582;Parent=Physo144582;rank=2 scaffold_202 . CDS 14777 14831 . - 0 ID=Physo144582;Parent=Physo144582;rank=1 scaffold_202 . exon 10502 13635 . - . ID=Physo144582.3;Parent=Physo144582;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_202 . exon 13679 14705 . - . ID=Physo144582.2;Parent=Physo144582;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_202 . exon 14777 14831 . - . ID=Physo144582.1;Parent=Physo144582;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_202 . repeat_region 17113 24551 . ? . description=dust scaffold_202 . repeat_region 24552 40994 . ? . description=dust scaffold_202 . repeat_region 24552 40994 . ? . description=dust scaffold_202 . repeat_region 40995 41065 . - . description=GypsyPi-1c_I-int scaffold_202 . repeat_region 43813 43862 . ? . description=dust scaffold_202 . biological_region 44613 44613 0.999 + . logic_name=eponine scaffold_202 . biological_region 44658 44661 0.999 + . logic_name=eponine scaffold_202 . repeat_region 45115 45164 . ? . description=dust scaffold_202 . biological_region 45231 45236 0.999 + . logic_name=eponine scaffold_202 . biological_region 45290 45293 0.999 - . logic_name=eponine scaffold_202 . biological_region 45291 45295 0.999 + . logic_name=eponine scaffold_202 . biological_region 45321 45323 0.999 - . logic_name=eponine scaffold_202 . biological_region 45387 45389 0.999 - . logic_name=eponine scaffold_202 . repeat_region 46097 46232 . ? . description=dust scaffold_202 . biological_region 46301 46304 0.999 + . logic_name=eponine scaffold_202 . biological_region 46471 46475 0.999 + . logic_name=eponine scaffold_202 . repeat_region 46970 47245 . ? . description=trf scaffold_202 . repeat_region 46970 47246 . ? . description=trf scaffold_202 . repeat_region 47318 47965 . + . description=LSU-rRNA_Hca scaffold_202 . repeat_region 47972 48238 . ? . description=dust scaffold_202 . biological_region 48336 48341 0.999 + . logic_name=eponine scaffold_202 . biological_region 48507 48511 0.999 + . logic_name=eponine scaffold_202 . biological_region 48566 48567 0.999 + . logic_name=eponine scaffold_202 . biological_region 48586 48586 0.999 + . logic_name=eponine scaffold_202 ensembl protein_coding_gene 47317 47604 . - . ID=Physo125126;biotype=protein_coding;external_name=estExt_Genewise1.C_2020004;logic_name=jgi_physo1_1 scaffold_202 ensembl transcript 47317 47604 . - . ID=Physo125126;Parent=Physo125126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_202 . CDS 47317 47477 . - 0 ID=Physo125126;Parent=Physo125126;rank=2 scaffold_202 . exon 47317 47477 . - . ID=Physo125126.2;Parent=Physo125126;constitutive=1;ensembl_phase=1;rank=2 scaffold_202 . CDS 47523 47604 . - 0 ID=Physo125126;Parent=Physo125126;rank=1 scaffold_202 . exon 47523 47604 . - . ID=Physo125126.1;Parent=Physo125126;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_201 1 49629 scaffold_201 . biological_region 729 731 0.999 + . logic_name=eponine scaffold_201 . biological_region 819 820 0.999 - . logic_name=eponine scaffold_201 . biological_region 843 850 0.999 - . logic_name=eponine scaffold_201 . biological_region 847 849 0.999 + . logic_name=eponine scaffold_201 . repeat_region 1016 1065 . ? . description=dust scaffold_201 . biological_region 2151 2154 0.999 - . logic_name=eponine scaffold_201 . repeat_region 2434 2726 . ? . description=trf scaffold_201 . repeat_region 3398 3440 . ? . description=trf scaffold_201 . repeat_region 4869 4885 . ? . description=dust scaffold_201 . repeat_region 5085 5138 . ? . description=dust scaffold_201 . repeat_region 5420 5427 . ? . description=dust scaffold_201 . biological_region 5846 5850 0.999 + . logic_name=eponine scaffold_201 . biological_region 5893 5897 0.999 - . logic_name=eponine scaffold_201 . biological_region 6456 6457 0.999 - . logic_name=eponine scaffold_201 . biological_region 7192 7193 0.999 + . logic_name=eponine scaffold_201 . biological_region 7288 7291 0.999 + . logic_name=eponine scaffold_201 . repeat_region 7301 7339 . ? . description=trf scaffold_201 . biological_region 7687 7691 0.999 + . logic_name=eponine scaffold_201 . biological_region 7783 7785 0.999 - . logic_name=eponine scaffold_201 . repeat_region 9581 24815 . ? . description=dust scaffold_201 ensembl protein_coding_gene 483 3014 . + . ID=Physo144576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2010001;logic_name=jgi_physo1_1 scaffold_201 ensembl transcript 483 3014 . + . ID=Physo144576;Parent=Physo144576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_201 . CDS 483 983 . + 0 ID=Physo144576;Parent=Physo144576;rank=1 scaffold_201 . exon 483 983 . + . ID=Physo144576.1;Parent=Physo144576;constitutive=1;rank=1 scaffold_201 . CDS 1103 1248 . + 0 ID=Physo144576;Parent=Physo144576;rank=2 scaffold_201 . exon 1103 1248 . + . ID=Physo144576.2;Parent=Physo144576;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_201 . CDS 1805 3014 . + 0 ID=Physo144576;Parent=Physo144576;rank=3 scaffold_201 . exon 1805 3014 . + . ID=Physo144576.3;Parent=Physo144576;constitutive=1;ensembl_phase=2;rank=3 scaffold_201 ensembl protein_coding_gene 3151 7897 . - . ID=Physo144577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2010002;logic_name=jgi_physo1_1 scaffold_201 ensembl transcript 3151 7897 . - . ID=Physo144577;Parent=Physo144577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_201 . CDS 3151 4368 . - 0 ID=Physo144577;Parent=Physo144577;rank=7 scaffold_201 . exon 3151 4368 . - . ID=Physo144577.7;Parent=Physo144577;constitutive=1;rank=7 scaffold_201 . CDS 4444 4596 . - 0 ID=Physo144577;Parent=Physo144577;rank=6 scaffold_201 . exon 4444 4596 . - . ID=Physo144577.6;Parent=Physo144577;constitutive=1;rank=6 scaffold_201 . CDS 4678 4830 . - 0 ID=Physo144577;Parent=Physo144577;rank=5 scaffold_201 . exon 4678 4830 . - . ID=Physo144577.5;Parent=Physo144577;constitutive=1;rank=5 scaffold_201 . CDS 4906 5058 . - 0 ID=Physo144577;Parent=Physo144577;rank=4 scaffold_201 . exon 4906 5058 . - . ID=Physo144577.4;Parent=Physo144577;constitutive=1;rank=4 scaffold_201 . CDS 5149 5289 . - 0 ID=Physo144577;Parent=Physo144577;rank=3 scaffold_201 . exon 5149 5289 . - . ID=Physo144577.3;Parent=Physo144577;constitutive=1;rank=3 scaffold_201 . CDS 5309 5377 . - 0 ID=Physo144577;Parent=Physo144577;rank=2 scaffold_201 . exon 5309 5377 . - . ID=Physo144577.2;Parent=Physo144577;constitutive=1;rank=2 scaffold_201 . CDS 5609 7897 . - 0 ID=Physo144577;Parent=Physo144577;rank=1 scaffold_201 . exon 5609 7897 . - . ID=Physo144577.1;Parent=Physo144577;constitutive=1;rank=1 scaffold_201 ensembl protein_coding_gene 8699 9470 . - . ID=Physo144578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2010003;logic_name=jgi_physo1_1 scaffold_201 ensembl transcript 8699 9470 . - . ID=Physo144578;Parent=Physo144578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_201 . CDS 8699 9324 . - 0 ID=Physo144578;Parent=Physo144578;rank=2 scaffold_201 . exon 8699 9324 . - . ID=Physo144578.2;Parent=Physo144578;constitutive=1;ensembl_phase=1;rank=2 scaffold_201 . CDS 9464 9470 . - 0 ID=Physo144578;Parent=Physo144578;rank=1 scaffold_201 . exon 9464 9470 . - . ID=Physo144578.1;Parent=Physo144578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_201 . repeat_region 9581 24815 . ? . description=dust scaffold_201 . repeat_region 24816 36064 . ? . description=dust scaffold_201 . repeat_region 37215 37305 . ? . description=trf scaffold_201 . repeat_region 37276 37362 . ? . description=trf scaffold_201 . repeat_region 37297 37377 . ? . description=trf scaffold_201 . biological_region 41266 41271 0.999 + . logic_name=eponine scaffold_201 . biological_region 41549 41552 0.999 + . logic_name=eponine scaffold_201 . biological_region 41611 41612 0.999 - . logic_name=eponine scaffold_201 . biological_region 41639 41640 0.999 - . logic_name=eponine scaffold_201 . biological_region 41695 41696 0.999 + . logic_name=eponine scaffold_201 . biological_region 41756 41761 0.999 + . logic_name=eponine scaffold_201 . repeat_region 43972 43979 . ? . description=dust scaffold_201 . biological_region 47440 47443 0.999 + . logic_name=eponine scaffold_201 . biological_region 47530 47531 0.999 - . logic_name=eponine scaffold_201 . biological_region 47554 47561 0.999 - . logic_name=eponine scaffold_201 . biological_region 47558 47560 0.999 + . logic_name=eponine scaffold_201 . biological_region 48106 48110 0.999 + . logic_name=eponine scaffold_201 . biological_region 48776 48777 0.999 + . logic_name=eponine scaffold_201 . repeat_region 49273 49626 . - . description=GypsyPi-1c_I-int scaffold_201 ensembl protein_coding_gene 49394 49615 . - . ID=Physo125121;biotype=protein_coding;external_name=estExt_Genewise1.C_2010004;logic_name=jgi_physo1_1 scaffold_201 ensembl transcript 49394 49615 . - . ID=Physo125121;Parent=Physo125121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_201 . CDS 49394 49609 . - 0 ID=Physo125121;Parent=Physo125121;rank=1 scaffold_201 . exon 49394 49615 . - . ID=Physo125121.1;Parent=Physo125121;constitutive=1;ensembl_phase=-1;rank=1 scaffold_201 ensembl protein_coding_gene 41029 41921 . + . ID=Physo144579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2010004;logic_name=jgi_physo1_1 scaffold_201 ensembl transcript 41029 41921 . + . ID=Physo144579;Parent=Physo144579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_201 . exon 41029 41921 . + . ID=Physo144579.1;Parent=Physo144579;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_201 . CDS 41062 41865 . + 0 ID=Physo144579;Parent=Physo144579;rank=1 scaffold_201 ensembl protein_coding_gene 47194 48774 . + . ID=Physo144580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2010005;logic_name=jgi_physo1_1 scaffold_201 ensembl transcript 47194 48774 . + . ID=Physo144580;Parent=Physo144580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_201 . CDS 47194 47694 . + 0 ID=Physo144580;Parent=Physo144580;rank=1 scaffold_201 . exon 47194 47694 . + . ID=Physo144580.1;Parent=Physo144580;constitutive=1;rank=1 scaffold_201 . CDS 47884 48180 . + 0 ID=Physo144580;Parent=Physo144580;rank=2 scaffold_201 . exon 47884 48180 . + . ID=Physo144580.2;Parent=Physo144580;constitutive=1;rank=2 scaffold_201 . CDS 48221 48226 . + 0 ID=Physo144580;Parent=Physo144580;rank=3 scaffold_201 . exon 48221 48226 . + . ID=Physo144580.3;Parent=Physo144580;constitutive=1;rank=3 scaffold_201 . CDS 48393 48449 . + 0 ID=Physo144580;Parent=Physo144580;rank=4 scaffold_201 . exon 48393 48449 . + . ID=Physo144580.4;Parent=Physo144580;constitutive=1;rank=4 scaffold_201 . CDS 48520 48774 . + 0 ID=Physo144580;Parent=Physo144580;rank=5 scaffold_201 . exon 48520 48774 . + . ID=Physo144580.5;Parent=Physo144580;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_200 1 50360 scaffold_200 . repeat_region 1 1671 . + . description=Polinton-1_PI scaffold_200 . repeat_region 1675 3770 . ? . description=dust scaffold_200 . repeat_region 3774 8415 . + . description=Polinton-1_PI scaffold_200 . repeat_region 8135 8142 . ? . description=dust scaffold_200 . repeat_region 8231 8238 . ? . description=dust scaffold_200 . repeat_region 12564 12764 . ? . description=trf scaffold_200 . repeat_region 15776 25181 . ? . description=dust scaffold_200 . repeat_region 25182 38338 . ? . description=dust scaffold_200 . repeat_region 25182 38338 . ? . description=dust scaffold_200 . biological_region 39262 39264 0.999 - . logic_name=eponine scaffold_200 . repeat_region 39446 39597 . ? . description=dust scaffold_200 . repeat_region 41193 41284 . ? . description=trf scaffold_200 . repeat_region 41193 41287 . ? . description=trf scaffold_200 . repeat_region 41205 41284 . ? . description=trf scaffold_200 ensembl protein_coding_gene 38368 39425 . - . ID=Physo144574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2000001;logic_name=jgi_physo1_1 scaffold_200 ensembl transcript 38368 39425 . - . ID=Physo144574;Parent=Physo144574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_200 . CDS 38368 38375 . - 0 ID=Physo144574;Parent=Physo144574;rank=2 scaffold_200 . exon 38368 38375 . - . ID=Physo144574.2;Parent=Physo144574;constitutive=1;ensembl_phase=1;rank=2 scaffold_200 . CDS 38399 39425 . - 0 ID=Physo144574;Parent=Physo144574;rank=1 scaffold_200 . exon 38399 39425 . - . ID=Physo144574.1;Parent=Physo144574;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_200 ensembl protein_coding_gene 49480 49590 . + . ID=Physo125117;biotype=protein_coding;external_name=estExt_Genewise1.C_2000001;logic_name=jgi_physo1_1 scaffold_200 ensembl transcript 49480 49590 . + . ID=Physo125117;Parent=Physo125117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_200 . exon 49480 49590 . + . ID=Physo125117.1;Parent=Physo125117;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_200 . CDS 49482 49532 . + 0 ID=Physo125117;Parent=Physo125117;rank=1 scaffold_200 ensembl protein_coding_gene 43948 46224 . + . ID=Physo144575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_2000002;logic_name=jgi_physo1_1 scaffold_200 ensembl transcript 43948 46224 . + . ID=Physo144575;Parent=Physo144575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_200 . CDS 43948 44283 . + 0 ID=Physo144575;Parent=Physo144575;rank=1 scaffold_200 . exon 43948 44283 . + . ID=Physo144575.1;Parent=Physo144575;constitutive=1;rank=1 scaffold_200 . CDS 44353 44874 . + 0 ID=Physo144575;Parent=Physo144575;rank=2 scaffold_200 . exon 44353 44874 . + . ID=Physo144575.2;Parent=Physo144575;constitutive=1;rank=2 scaffold_200 . CDS 44949 45533 . + 0 ID=Physo144575;Parent=Physo144575;rank=3 scaffold_200 . exon 44949 45533 . + . ID=Physo144575.3;Parent=Physo144575;constitutive=1;rank=3 scaffold_200 . CDS 45578 45645 . + 0 ID=Physo144575;Parent=Physo144575;rank=4 scaffold_200 . exon 45578 45645 . + . ID=Physo144575.4;Parent=Physo144575;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_200 . CDS 45755 46131 . + 0 ID=Physo144575;Parent=Physo144575;rank=5 scaffold_200 . exon 45755 46131 . + . ID=Physo144575.5;Parent=Physo144575;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_200 . CDS 46151 46224 . + 0 ID=Physo144575;Parent=Physo144575;rank=6 scaffold_200 . exon 46151 46224 . + . ID=Physo144575.6;Parent=Physo144575;constitutive=1;ensembl_phase=1;rank=6 ##gff-version 3 ##sequence-region scaffold_199 1 51432 scaffold_199 . repeat_region 1 287 . ? . description=dust scaffold_199 . repeat_region 1 299 . ? . description=trf scaffold_199 . repeat_region 917 1458 . ? . description=dust scaffold_199 . repeat_region 1745 1781 . ? . description=trf scaffold_199 . repeat_region 3661 3672 . ? . description=dust scaffold_199 . repeat_region 4742 4766 . ? . description=trf scaffold_199 ensembl protein_coding_gene 5920 8318 . - . ID=Physo144569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1990001;logic_name=jgi_physo1_1 scaffold_199 ensembl transcript 5920 8318 . - . ID=Physo144569;Parent=Physo144569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_199 . CDS 5920 6502 . - 0 ID=Physo144569;Parent=Physo144569;rank=5 scaffold_199 . exon 5920 6502 . - . ID=Physo144569.5;Parent=Physo144569;constitutive=1;ensembl_phase=2;rank=5 scaffold_199 . CDS 6683 6952 . - 0 ID=Physo144569;Parent=Physo144569;rank=4 scaffold_199 . exon 6683 6952 . - . ID=Physo144569.4;Parent=Physo144569;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_199 . CDS 6987 7693 . - 0 ID=Physo144569;Parent=Physo144569;rank=3 scaffold_199 . exon 6987 7693 . - . ID=Physo144569.3;Parent=Physo144569;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_199 . CDS 7805 8013 . - 0 ID=Physo144569;Parent=Physo144569;rank=2 scaffold_199 . exon 7805 8013 . - . ID=Physo144569.2;Parent=Physo144569;constitutive=1;ensembl_phase=1;rank=2 scaffold_199 . CDS 8036 8318 . - 0 ID=Physo144569;Parent=Physo144569;rank=1 scaffold_199 . exon 8036 8318 . - . ID=Physo144569.1;Parent=Physo144569;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_199 . repeat_region 10240 10300 . + . description=(CAGA)n scaffold_199 . repeat_region 13919 18518 . + . description=Gypsy-2-I_PI-int scaffold_199 ensembl protein_coding_gene 11461 11750 . + . ID=Physo125105;biotype=protein_coding;external_name=estExt_Genewise1.C_1990003;logic_name=jgi_physo1_1 scaffold_199 ensembl transcript 11461 11750 . + . ID=Physo125105;Parent=Physo125105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_199 . CDS 11461 11622 . + 0 ID=Physo125105;Parent=Physo125105;rank=1 scaffold_199 . exon 11461 11750 . + . ID=Physo125105.1;Parent=Physo125105;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_199 ensembl protein_coding_gene 13757 14611 . + . ID=Physo144570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1990002;logic_name=jgi_physo1_1 scaffold_199 ensembl transcript 13757 14611 . + . ID=Physo144570;Parent=Physo144570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_199 . CDS 13757 14611 . + 0 ID=Physo144570;Parent=Physo144570;rank=1 scaffold_199 . exon 13757 14611 . + . ID=Physo144570.1;Parent=Physo144570;constitutive=1;rank=1 scaffold_199 . biological_region 19610 19615 0.999 - . logic_name=eponine scaffold_199 . biological_region 19675 19678 0.999 - . logic_name=eponine scaffold_199 . repeat_region 20491 20498 . ? . description=dust scaffold_199 ensembl protein_coding_gene 17488 17860 . + . ID=Physo125109;biotype=protein_coding;external_name=estExt_Genewise1.C_1990007;logic_name=jgi_physo1_1 scaffold_199 ensembl transcript 17488 17860 . + . ID=Physo125109;Parent=Physo125109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_199 . exon 17488 17860 . + . ID=Physo125109.1;Parent=Physo125109;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_199 . CDS 17494 17817 . + 0 ID=Physo125109;Parent=Physo125109;rank=1 scaffold_199 . repeat_region 28441 28474 . ? . description=trf scaffold_199 . repeat_region 29728 29759 . ? . description=trf scaffold_199 . repeat_region 29728 29759 . ? . description=trf scaffold_199 ensembl protein_coding_gene 30368 31279 . + . ID=Physo109652;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1990001;logic_name=jgi_physo1_1 scaffold_199 ensembl transcript 30368 31279 . + . ID=Physo109652;Parent=Physo109652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_199 . CDS 30368 31279 . + 0 ID=Physo109652;Parent=Physo109652;rank=1 scaffold_199 . exon 30368 31279 . + . ID=Physo109652.1;Parent=Physo109652;constitutive=1;rank=1 scaffold_199 ensembl protein_coding_gene 32353 33187 . - . ID=Physo144572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1990004;logic_name=jgi_physo1_1 scaffold_199 ensembl transcript 32353 33187 . - . ID=Physo144572;Parent=Physo144572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_199 . CDS 32353 32810 . - 0 ID=Physo144572;Parent=Physo144572;rank=2 scaffold_199 . exon 32353 32810 . - . ID=Physo144572.2;Parent=Physo144572;constitutive=1;ensembl_phase=1;rank=2 scaffold_199 . CDS 33127 33187 . - 0 ID=Physo144572;Parent=Physo144572;rank=1 scaffold_199 . exon 33127 33187 . - . ID=Physo144572.1;Parent=Physo144572;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_199 . biological_region 34670 34674 0.999 + . logic_name=eponine scaffold_199 . biological_region 41087 41089 0.999 + . logic_name=eponine scaffold_199 ensembl protein_coding_gene 36093 36185 . - . ID=Physo125114;biotype=protein_coding;external_name=estExt_Genewise1.C_1990012;logic_name=jgi_physo1_1 scaffold_199 ensembl transcript 36093 36185 . - . ID=Physo125114;Parent=Physo125114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_199 . CDS 36093 36185 . - 0 ID=Physo125114;Parent=Physo125114;rank=1 scaffold_199 . exon 36093 36185 . - . ID=Physo125114.1;Parent=Physo125114;constitutive=1;rank=1 scaffold_199 ensembl protein_coding_gene 37888 41724 . + . ID=Physo144573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1990005;logic_name=jgi_physo1_1 scaffold_199 ensembl transcript 37888 41724 . + . ID=Physo144573;Parent=Physo144573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_199 . CDS 37888 41724 . + 0 ID=Physo144573;Parent=Physo144573;rank=1 scaffold_199 . exon 37888 41724 . + . ID=Physo144573.1;Parent=Physo144573;constitutive=1;rank=1 scaffold_199 . repeat_region 44114 44163 . + . description=Polinton-1_PI scaffold_199 . repeat_region 47626 47639 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_197 1 52591 scaffold_197 . biological_region 4096 4097 0.999 + . logic_name=eponine scaffold_197 . biological_region 6041 6043 0.999 + . logic_name=eponine scaffold_197 ensembl protein_coding_gene 1 2861 . - . ID=Physo144540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970001;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 1 2861 . - . ID=Physo144540;Parent=Physo144540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . exon 1 2861 . - . ID=Physo144540.1;Parent=Physo144540;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_197 . CDS 3 2861 . - 0 ID=Physo144540;Parent=Physo144540;rank=1 scaffold_197 . repeat_region 11063 11072 . ? . description=dust scaffold_197 . repeat_region 11710 11732 . ? . description=dust scaffold_197 . repeat_region 13181 13188 . ? . description=dust scaffold_197 . repeat_region 13828 13835 . ? . description=dust scaffold_197 ensembl protein_coding_gene 9146 10164 . - . ID=Physo144541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970002;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 9146 10164 . - . ID=Physo144541;Parent=Physo144541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 9146 9734 . - 0 ID=Physo144541;Parent=Physo144541;rank=2 scaffold_197 . exon 9146 9734 . - . ID=Physo144541.2;Parent=Physo144541;constitutive=1;ensembl_phase=2;rank=2 scaffold_197 . CDS 9899 10164 . - 0 ID=Physo144541;Parent=Physo144541;rank=1 scaffold_197 . exon 9899 10164 . - . ID=Physo144541.1;Parent=Physo144541;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_197 ensembl protein_coding_gene 13924 16071 . - . ID=Physo144542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970003;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 13924 16071 . - . ID=Physo144542;Parent=Physo144542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 13924 16071 . - 0 ID=Physo144542;Parent=Physo144542;rank=1 scaffold_197 . exon 13924 16071 . - . ID=Physo144542.1;Parent=Physo144542;constitutive=1;rank=1 scaffold_197 ensembl protein_coding_gene 17091 19574 . + . ID=Physo144543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970004;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 17091 19574 . + . ID=Physo144543;Parent=Physo144543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 17091 19574 . + 0 ID=Physo144543;Parent=Physo144543;rank=1 scaffold_197 . exon 17091 19574 . + . ID=Physo144543.1;Parent=Physo144543;constitutive=1;rank=1 scaffold_197 . repeat_region 19669 19692 . ? . description=trf scaffold_197 . repeat_region 19741 19803 . ? . description=trf scaffold_197 . biological_region 20340 20346 0.999 - . logic_name=eponine scaffold_197 . biological_region 23213 23217 0.999 + . logic_name=eponine scaffold_197 ensembl protein_coding_gene 20637 21526 . + . ID=Physo125078;biotype=protein_coding;external_name=estExt_Genewise1.C_1970008;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 20637 21526 . + . ID=Physo125078;Parent=Physo125078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . exon 20637 20808 . + . ID=Physo125078.1;Parent=Physo125078;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_197 . CDS 20742 20808 . + 0 ID=Physo125078;Parent=Physo125078;rank=1 scaffold_197 . CDS 20895 21526 . + 0 ID=Physo125078;Parent=Physo125078;rank=2 scaffold_197 . exon 20895 21526 . + . ID=Physo125078.2;Parent=Physo125078;constitutive=1;ensembl_phase=1;rank=2 scaffold_197 ensembl protein_coding_gene 19633 20475 . - . ID=Physo144544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970005;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 19633 20475 . - . ID=Physo144544;Parent=Physo144544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 19633 20160 . - 0 ID=Physo144544;Parent=Physo144544;rank=2 scaffold_197 . exon 19633 20160 . - . ID=Physo144544.2;Parent=Physo144544;constitutive=1;rank=2 scaffold_197 . CDS 20260 20475 . - 0 ID=Physo144544;Parent=Physo144544;rank=1 scaffold_197 . exon 20260 20475 . - . ID=Physo144544.1;Parent=Physo144544;constitutive=1;rank=1 scaffold_197 ensembl protein_coding_gene 21750 24198 . - . ID=Physo144546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970007;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 21750 24198 . - . ID=Physo144546;Parent=Physo144546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 21750 21774 . - 0 ID=Physo144546;Parent=Physo144546;rank=3 scaffold_197 . exon 21750 21774 . - . ID=Physo144546.3;Parent=Physo144546;constitutive=1;ensembl_phase=2;rank=3 scaffold_197 . CDS 21824 23353 . - 0 ID=Physo144546;Parent=Physo144546;rank=2 scaffold_197 . exon 21824 23353 . - . ID=Physo144546.2;Parent=Physo144546;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_197 . CDS 23765 24198 . - 0 ID=Physo144546;Parent=Physo144546;rank=1 scaffold_197 . exon 23765 24198 . - . ID=Physo144546.1;Parent=Physo144546;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_197 ensembl protein_coding_gene 25217 27182 . - . ID=Physo144547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970008;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 25217 27182 . - . ID=Physo144547;Parent=Physo144547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 25217 25896 . - 0 ID=Physo144547;Parent=Physo144547;rank=5 scaffold_197 . exon 25217 25896 . - . ID=Physo144547.5;Parent=Physo144547;constitutive=1;ensembl_phase=1;rank=5 scaffold_197 . CDS 25971 26103 . - 0 ID=Physo144547;Parent=Physo144547;rank=4 scaffold_197 . exon 25971 26103 . - . ID=Physo144547.4;Parent=Physo144547;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_197 . CDS 26163 26416 . - 0 ID=Physo144547;Parent=Physo144547;rank=3 scaffold_197 . exon 26163 26416 . - . ID=Physo144547.3;Parent=Physo144547;constitutive=1;ensembl_phase=1;rank=3 scaffold_197 . CDS 26498 26540 . - 0 ID=Physo144547;Parent=Physo144547;rank=2 scaffold_197 . CDS 26619 27182 . - 0 ID=Physo144547;Parent=Physo144547;rank=1 scaffold_197 . repeat_region 27451 27460 . ? . description=dust scaffold_197 . repeat_region 27903 27911 . ? . description=dust scaffold_197 . repeat_region 34377 34404 . ? . description=dust scaffold_197 . exon 26498 26540 . - . ID=Physo144547.2;Parent=Physo144547;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_197 . exon 26619 27182 . - . ID=Physo144547.1;Parent=Physo144547;constitutive=1;rank=1 scaffold_197 ensembl protein_coding_gene 28309 29328 . + . ID=Physo144548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970009;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 28309 29328 . + . ID=Physo144548;Parent=Physo144548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 28309 29328 . + 0 ID=Physo144548;Parent=Physo144548;rank=1 scaffold_197 . exon 28309 29328 . + . ID=Physo144548.1;Parent=Physo144548;constitutive=1;rank=1 scaffold_197 . biological_region 35116 35116 0.999 + . logic_name=eponine scaffold_197 . biological_region 35335 35336 0.999 + . logic_name=eponine scaffold_197 . biological_region 35451 35455 0.999 - . logic_name=eponine scaffold_197 . biological_region 35853 35855 0.999 + . logic_name=eponine scaffold_197 . repeat_region 36182 36230 . ? . description=trf scaffold_197 . biological_region 37586 37590 0.999 + . logic_name=eponine scaffold_197 . repeat_region 37633 37657 . ? . description=trf scaffold_197 . biological_region 37656 37658 0.999 - . logic_name=eponine scaffold_197 . biological_region 37671 37679 0.999 - . logic_name=eponine scaffold_197 . biological_region 37875 37880 0.999 + . logic_name=eponine scaffold_197 . biological_region 41896 41900 0.999 - . logic_name=eponine scaffold_197 . repeat_region 42426 42473 . ? . description=trf scaffold_197 . repeat_region 42675 42694 . ? . description=trf scaffold_197 . biological_region 43024 43028 0.999 - . logic_name=eponine scaffold_197 . biological_region 43130 43132 0.999 - . logic_name=eponine scaffold_197 . biological_region 43453 43457 0.999 - . logic_name=eponine scaffold_197 . biological_region 43493 43496 0.999 - . logic_name=eponine scaffold_197 ensembl protein_coding_gene 39685 40530 . - . ID=Physo109650;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1970002;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 39685 40530 . - . ID=Physo109650;Parent=Physo109650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 39685 40530 . - 0 ID=Physo109650;Parent=Physo109650;rank=1 scaffold_197 . exon 39685 40530 . - . ID=Physo109650.1;Parent=Physo109650;constitutive=1;rank=1 scaffold_197 ensembl protein_coding_gene 35228 37395 . + . ID=Physo125082;biotype=protein_coding;external_name=estExt_Genewise1.C_1970012;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 35228 37395 . + . ID=Physo125082;Parent=Physo125082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . exon 35228 35257 . + . ID=Physo125082.1;Parent=Physo125082;constitutive=1;ensembl_phase=-1;rank=1 scaffold_197 . CDS 35237 35257 . + 0 ID=Physo125082;Parent=Physo125082;rank=1 scaffold_197 . CDS 35344 35625 . + 0 ID=Physo125082;Parent=Physo125082;rank=2 scaffold_197 . exon 35344 35625 . + . ID=Physo125082.2;Parent=Physo125082;constitutive=1;rank=2 scaffold_197 . CDS 35746 35970 . + 0 ID=Physo125082;Parent=Physo125082;rank=3 scaffold_197 . exon 35746 35970 . + . ID=Physo125082.3;Parent=Physo125082;constitutive=1;rank=3 scaffold_197 . CDS 36045 37198 . + 0 ID=Physo125082;Parent=Physo125082;rank=4 scaffold_197 . exon 36045 37198 . + . ID=Physo125082.4;Parent=Physo125082;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_197 . CDS 37287 37299 . + 0 ID=Physo125082;Parent=Physo125082;rank=5 scaffold_197 . exon 37287 37395 . + . ID=Physo125082.5;Parent=Physo125082;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_197 ensembl protein_coding_gene 37574 39578 . + . ID=Physo144551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970012;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 37574 39578 . + . ID=Physo144551;Parent=Physo144551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 37574 38348 . + 0 ID=Physo144551;Parent=Physo144551;rank=1 scaffold_197 . exon 37574 38348 . + . ID=Physo144551.1;Parent=Physo144551;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_197 . CDS 38426 38982 . + 0 ID=Physo144551;Parent=Physo144551;rank=2 scaffold_197 . exon 38426 38982 . + . ID=Physo144551.2;Parent=Physo144551;constitutive=1;ensembl_phase=1;rank=2 scaffold_197 . CDS 39056 39105 . + 0 ID=Physo144551;Parent=Physo144551;rank=3 scaffold_197 . exon 39056 39105 . + . ID=Physo144551.3;Parent=Physo144551;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_197 . CDS 39179 39318 . + 0 ID=Physo144551;Parent=Physo144551;rank=4 scaffold_197 . exon 39179 39318 . + . ID=Physo144551.4;Parent=Physo144551;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_197 . CDS 39424 39578 . + 0 ID=Physo144551;Parent=Physo144551;rank=5 scaffold_197 . exon 39424 39578 . + . ID=Physo144551.5;Parent=Physo144551;constitutive=1;ensembl_phase=1;rank=5 scaffold_197 ensembl protein_coding_gene 40937 43114 . - . ID=Physo144553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970014;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 40937 43114 . - . ID=Physo144553;Parent=Physo144553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 40937 42637 . - 0 ID=Physo144553;Parent=Physo144553;rank=3 scaffold_197 . exon 40937 42637 . - . ID=Physo144553.3;Parent=Physo144553;constitutive=1;rank=3 scaffold_197 . CDS 42709 42804 . - 0 ID=Physo144553;Parent=Physo144553;rank=2 scaffold_197 . exon 42709 42804 . - . ID=Physo144553.2;Parent=Physo144553;constitutive=1;rank=2 scaffold_197 . CDS 42914 43114 . - 0 ID=Physo144553;Parent=Physo144553;rank=1 scaffold_197 . exon 42914 43114 . - . ID=Physo144553.1;Parent=Physo144553;constitutive=1;rank=1 scaffold_197 ensembl protein_coding_gene 43308 46540 . + . ID=Physo144554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970015;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 43308 46540 . + . ID=Physo144554;Parent=Physo144554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 43308 43472 . + 0 ID=Physo144554;Parent=Physo144554;rank=1 scaffold_197 . exon 43308 43472 . + . ID=Physo144554.1;Parent=Physo144554;constitutive=1;rank=1 scaffold_197 . CDS 43566 43695 . + 0 ID=Physo144554;Parent=Physo144554;rank=2 scaffold_197 . exon 43566 43695 . + . ID=Physo144554.2;Parent=Physo144554;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_197 . CDS 43769 44015 . + 0 ID=Physo144554;Parent=Physo144554;rank=3 scaffold_197 . exon 43769 44015 . + . ID=Physo144554.3;Parent=Physo144554;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_197 . CDS 44089 44257 . + 0 ID=Physo144554;Parent=Physo144554;rank=4 scaffold_197 . CDS 44307 44526 . + 0 ID=Physo144554;Parent=Physo144554;rank=5 scaffold_197 . CDS 44608 44675 . + 0 ID=Physo144554;Parent=Physo144554;rank=6 scaffold_197 . CDS 44741 44924 . + 0 ID=Physo144554;Parent=Physo144554;rank=7 scaffold_197 . CDS 44952 45055 . + 0 ID=Physo144554;Parent=Physo144554;rank=8 scaffold_197 . CDS 45127 45199 . + 0 ID=Physo144554;Parent=Physo144554;rank=9 scaffold_197 . CDS 45466 45502 . + 0 ID=Physo144554;Parent=Physo144554;rank=10 scaffold_197 . CDS 45586 45614 . + 0 ID=Physo144554;Parent=Physo144554;rank=11 scaffold_197 . CDS 45807 46083 . + 0 ID=Physo144554;Parent=Physo144554;rank=12 scaffold_197 . CDS 46150 46213 . + 0 ID=Physo144554;Parent=Physo144554;rank=13 scaffold_197 . CDS 46457 46540 . + 0 ID=Physo144554;Parent=Physo144554;rank=14 scaffold_197 . repeat_region 50394 50401 . ? . description=dust scaffold_197 . repeat_region 50499 50506 . ? . description=dust scaffold_197 . repeat_region 51636 51644 . ? . description=dust scaffold_197 . exon 44089 44257 . + . ID=Physo144554.4;Parent=Physo144554;constitutive=1;ensembl_phase=2;rank=4 scaffold_197 . exon 44307 44526 . + . ID=Physo144554.5;Parent=Physo144554;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_197 . exon 44608 44675 . + . ID=Physo144554.6;Parent=Physo144554;constitutive=1;ensembl_phase=1;rank=6 scaffold_197 . exon 44741 44924 . + . ID=Physo144554.7;Parent=Physo144554;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_197 . exon 44952 45055 . + . ID=Physo144554.8;Parent=Physo144554;constitutive=1;ensembl_phase=1;rank=8 scaffold_197 . exon 45127 45199 . + . ID=Physo144554.9;Parent=Physo144554;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_197 . exon 45466 45502 . + . ID=Physo144554.10;Parent=Physo144554;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_197 . exon 45586 45614 . + . ID=Physo144554.11;Parent=Physo144554;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_197 . exon 45807 46083 . + . ID=Physo144554.12;Parent=Physo144554;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_197 . exon 46150 46213 . + . ID=Physo144554.13;Parent=Physo144554;constitutive=1;ensembl_phase=2;rank=13 scaffold_197 . exon 46457 46540 . + . ID=Physo144554.14;Parent=Physo144554;constitutive=1;rank=14 scaffold_197 ensembl protein_coding_gene 47292 49690 . + . ID=Physo144555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970016;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 47292 49690 . + . ID=Physo144555;Parent=Physo144555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 47292 49316 . + 0 ID=Physo144555;Parent=Physo144555;rank=1 scaffold_197 . exon 47292 49316 . + . ID=Physo144555.1;Parent=Physo144555;constitutive=1;rank=1 scaffold_197 . CDS 49406 49690 . + 0 ID=Physo144555;Parent=Physo144555;rank=2 scaffold_197 . exon 49406 49690 . + . ID=Physo144555.2;Parent=Physo144555;constitutive=1;rank=2 scaffold_197 ensembl protein_coding_gene 51840 52559 . - . ID=Physo144556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1970017;logic_name=jgi_physo1_1 scaffold_197 ensembl transcript 51840 52559 . - . ID=Physo144556;Parent=Physo144556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_197 . CDS 51840 51844 . - 0 ID=Physo144556;Parent=Physo144556;rank=2 scaffold_197 . exon 51840 51844 . - . ID=Physo144556.2;Parent=Physo144556;constitutive=1;ensembl_phase=1;rank=2 scaffold_197 . CDS 51932 52559 . - 0 ID=Physo144556;Parent=Physo144556;rank=1 scaffold_197 . exon 51932 52559 . - . ID=Physo144556.1;Parent=Physo144556;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_198 1 52651 scaffold_198 . repeat_region 539 551 . ? . description=dust scaffold_198 . repeat_region 765 814 . ? . description=dust scaffold_198 . biological_region 1669 1674 0.999 - . logic_name=eponine scaffold_198 . biological_region 2080 2081 0.999 + . logic_name=eponine scaffold_198 . biological_region 2115 2118 0.999 + . logic_name=eponine scaffold_198 . biological_region 2124 2127 0.999 - . logic_name=eponine scaffold_198 . biological_region 2170 2174 0.999 - . logic_name=eponine scaffold_198 . biological_region 2220 2224 0.999 - . logic_name=eponine scaffold_198 . repeat_region 2257 2266 . ? . description=dust scaffold_198 . repeat_region 2761 2779 . ? . description=dust scaffold_198 . biological_region 3301 3307 0.999 - . logic_name=eponine scaffold_198 . biological_region 3313 3313 0.999 - . logic_name=eponine scaffold_198 . biological_region 3780 3784 0.999 - . logic_name=eponine scaffold_198 . biological_region 4067 4069 0.999 + . logic_name=eponine scaffold_198 . biological_region 4214 4217 0.999 + . logic_name=eponine scaffold_198 . biological_region 4247 4252 0.999 + . logic_name=eponine scaffold_198 . biological_region 4293 4299 0.999 + . logic_name=eponine scaffold_198 . biological_region 4339 4346 0.999 - . logic_name=eponine scaffold_198 . biological_region 4388 4391 0.999 - . logic_name=eponine scaffold_198 . biological_region 6173 6175 0.999 + . logic_name=eponine scaffold_198 . biological_region 7642 7645 0.999 + . logic_name=eponine scaffold_198 . biological_region 7676 7677 0.999 + . logic_name=eponine scaffold_198 . repeat_region 8235 8277 . ? . description=trf scaffold_198 . biological_region 8273 8276 0.999 + . logic_name=eponine scaffold_198 . biological_region 8299 8303 0.999 + . logic_name=eponine scaffold_198 . biological_region 8317 8319 0.999 + . logic_name=eponine scaffold_198 ensembl protein_coding_gene 2449 9285 . + . ID=Physo144557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980001;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 2449 9285 . + . ID=Physo144557;Parent=Physo144557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . CDS 2449 2503 . + 0 ID=Physo144557;Parent=Physo144557;rank=1 scaffold_198 . exon 2449 2503 . + . ID=Physo144557.1;Parent=Physo144557;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_198 . CDS 2575 3484 . + 0 ID=Physo144557;Parent=Physo144557;rank=2 scaffold_198 . exon 2575 3484 . + . ID=Physo144557.2;Parent=Physo144557;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_198 . CDS 3508 4678 . + 0 ID=Physo144557;Parent=Physo144557;rank=3 scaffold_198 . exon 3508 4678 . + . ID=Physo144557.3;Parent=Physo144557;constitutive=1;ensembl_phase=2;rank=3 scaffold_198 . CDS 4841 5096 . + 0 ID=Physo144557;Parent=Physo144557;rank=4 scaffold_198 . exon 4841 5096 . + . ID=Physo144557.4;Parent=Physo144557;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_198 . CDS 5236 5357 . + 0 ID=Physo144557;Parent=Physo144557;rank=5 scaffold_198 . exon 5236 5357 . + . ID=Physo144557.5;Parent=Physo144557;constitutive=1;ensembl_phase=1;rank=5 scaffold_198 . CDS 5571 5993 . + 0 ID=Physo144557;Parent=Physo144557;rank=6 scaffold_198 . exon 5571 5993 . + . ID=Physo144557.6;Parent=Physo144557;constitutive=1;rank=6 scaffold_198 . CDS 6029 6628 . + 0 ID=Physo144557;Parent=Physo144557;rank=7 scaffold_198 . exon 6029 6628 . + . ID=Physo144557.7;Parent=Physo144557;constitutive=1;rank=7 scaffold_198 . CDS 6661 6836 . + 0 ID=Physo144557;Parent=Physo144557;rank=8 scaffold_198 . exon 6661 6836 . + . ID=Physo144557.8;Parent=Physo144557;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_198 . CDS 6894 7269 . + 0 ID=Physo144557;Parent=Physo144557;rank=9 scaffold_198 . exon 6894 7269 . + . ID=Physo144557.9;Parent=Physo144557;constitutive=1;ensembl_phase=2;rank=9 scaffold_198 . CDS 7446 7453 . + 0 ID=Physo144557;Parent=Physo144557;rank=10 scaffold_198 . exon 7446 7453 . + . ID=Physo144557.10;Parent=Physo144557;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_198 . CDS 7505 8060 . + 0 ID=Physo144557;Parent=Physo144557;rank=11 scaffold_198 . exon 7505 8060 . + . ID=Physo144557.11;Parent=Physo144557;constitutive=1;ensembl_phase=2;rank=11 scaffold_198 . CDS 8115 9200 . + 0 ID=Physo144557;Parent=Physo144557;rank=12 scaffold_198 . exon 8115 9200 . + . ID=Physo144557.12;Parent=Physo144557;constitutive=1;rank=12 scaffold_198 . CDS 9232 9285 . + 0 ID=Physo144557;Parent=Physo144557;rank=13 scaffold_198 . exon 9232 9285 . + . ID=Physo144557.13;Parent=Physo144557;constitutive=1;rank=13 scaffold_198 ensembl protein_coding_gene 9680 14971 . - . ID=Physo144558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980002;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 9680 14971 . - . ID=Physo144558;Parent=Physo144558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . CDS 9680 9963 . - 0 ID=Physo144558;Parent=Physo144558;rank=6 scaffold_198 . exon 9680 9963 . - . ID=Physo144558.6;Parent=Physo144558;constitutive=1;ensembl_phase=1;rank=6 scaffold_198 . CDS 10354 11217 . - 0 ID=Physo144558;Parent=Physo144558;rank=5 scaffold_198 . exon 10354 11217 . - . ID=Physo144558.5;Parent=Physo144558;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_198 . CDS 11482 12895 . - 0 ID=Physo144558;Parent=Physo144558;rank=4 scaffold_198 . exon 11482 12895 . - . ID=Physo144558.4;Parent=Physo144558;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_198 . CDS 12926 13679 . - 0 ID=Physo144558;Parent=Physo144558;rank=3 scaffold_198 . exon 12926 13679 . - . ID=Physo144558.3;Parent=Physo144558;constitutive=1;ensembl_phase=2;rank=3 scaffold_198 . CDS 14386 14816 . - 0 ID=Physo144558;Parent=Physo144558;rank=2 scaffold_198 . exon 14386 14816 . - . ID=Physo144558.2;Parent=Physo144558;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_198 . CDS 14843 14971 . - 0 ID=Physo144558;Parent=Physo144558;rank=1 scaffold_198 . exon 14843 14971 . - . ID=Physo144558.1;Parent=Physo144558;constitutive=1;rank=1 scaffold_198 . repeat_region 17909 18045 . ? . description=trf scaffold_198 . repeat_region 18485 18519 . ? . description=dust scaffold_198 . repeat_region 18488 18510 . ? . description=trf scaffold_198 ensembl protein_coding_gene 18575 22552 . + . ID=Physo144559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980003;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 18575 22552 . + . ID=Physo144559;Parent=Physo144559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . CDS 18575 19834 . + 0 ID=Physo144559;Parent=Physo144559;rank=1 scaffold_198 . exon 18575 19834 . + . ID=Physo144559.1;Parent=Physo144559;constitutive=1;rank=1 scaffold_198 . CDS 19914 19938 . + 0 ID=Physo144559;Parent=Physo144559;rank=2 scaffold_198 . exon 19914 19938 . + . ID=Physo144559.2;Parent=Physo144559;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_198 . CDS 20033 20523 . + 0 ID=Physo144559;Parent=Physo144559;rank=3 scaffold_198 . exon 20033 20523 . + . ID=Physo144559.3;Parent=Physo144559;constitutive=1;ensembl_phase=1;rank=3 scaffold_198 . CDS 20609 20679 . + 0 ID=Physo144559;Parent=Physo144559;rank=4 scaffold_198 . exon 20609 20679 . + . ID=Physo144559.4;Parent=Physo144559;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_198 . CDS 20746 22552 . + 0 ID=Physo144559;Parent=Physo144559;rank=5 scaffold_198 . exon 20746 22552 . + . ID=Physo144559.5;Parent=Physo144559;constitutive=1;ensembl_phase=2;rank=5 scaffold_198 ensembl protein_coding_gene 22611 25628 . - . ID=Physo144560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980004;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 22611 25628 . - . ID=Physo144560;Parent=Physo144560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . CDS 22611 25628 . - 0 ID=Physo144560;Parent=Physo144560;rank=1 scaffold_198 . exon 22611 25628 . - . ID=Physo144560.1;Parent=Physo144560;constitutive=1;rank=1 scaffold_198 ensembl protein_coding_gene 25771 26347 . + . ID=Physo144561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980005;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 25771 26347 . + . ID=Physo144561;Parent=Physo144561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . exon 25771 26347 . + . ID=Physo144561.1;Parent=Physo144561;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_198 . CDS 25773 26120 . + 0 ID=Physo144561;Parent=Physo144561;rank=1 scaffold_198 . biological_region 26443 26447 0.999 - . logic_name=eponine scaffold_198 . biological_region 27891 27894 0.999 + . logic_name=eponine scaffold_198 . biological_region 27938 27942 0.999 + . logic_name=eponine scaffold_198 . biological_region 28339 28344 0.999 + . logic_name=eponine scaffold_198 . biological_region 32748 32753 0.999 - . logic_name=eponine scaffold_198 . biological_region 33152 33156 0.999 - . logic_name=eponine scaffold_198 . biological_region 33200 33203 0.999 - . logic_name=eponine scaffold_198 . biological_region 34647 34651 0.999 + . logic_name=eponine scaffold_198 . biological_region 34909 34910 0.999 + . logic_name=eponine scaffold_198 ensembl protein_coding_gene 26921 27737 . - . ID=Physo144562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980006;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 26921 27737 . - . ID=Physo144562;Parent=Physo144562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . exon 26921 27737 . - . ID=Physo144562.1;Parent=Physo144562;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_198 . CDS 27116 27649 . - 0 ID=Physo144562;Parent=Physo144562;rank=1 scaffold_198 ensembl protein_coding_gene 33356 34172 . + . ID=Physo144563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980007;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 33356 34172 . + . ID=Physo144563;Parent=Physo144563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . exon 33356 34172 . + . ID=Physo144563.1;Parent=Physo144563;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_198 . CDS 33444 33977 . + 0 ID=Physo144563;Parent=Physo144563;rank=1 scaffold_198 ensembl protein_coding_gene 34661 35512 . - . ID=Physo144564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980008;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 34661 35512 . - . ID=Physo144564;Parent=Physo144564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . CDS 34661 35512 . - 0 ID=Physo144564;Parent=Physo144564;rank=1 scaffold_198 . exon 34661 35512 . - . ID=Physo144564.1;Parent=Physo144564;constitutive=1;rank=1 scaffold_198 ensembl protein_coding_gene 35948 37852 . + . ID=Physo125099;biotype=protein_coding;external_name=estExt_Genewise1.C_1980004;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 35948 37852 . + . ID=Physo125099;Parent=Physo125099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . exon 35948 36514 . + . ID=Physo125099.1;Parent=Physo125099;constitutive=1;ensembl_phase=-1;rank=1 scaffold_198 . CDS 36014 36514 . + 0 ID=Physo125099;Parent=Physo125099;rank=1 scaffold_198 . CDS 36583 37258 . + 0 ID=Physo125099;Parent=Physo125099;rank=2 scaffold_198 . exon 36583 37258 . + . ID=Physo125099.2;Parent=Physo125099;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_198 . CDS 37323 37852 . + 0 ID=Physo125099;Parent=Physo125099;rank=3 scaffold_198 . exon 37323 37852 . + . ID=Physo125099.3;Parent=Physo125099;constitutive=1;ensembl_phase=1;rank=3 scaffold_198 ensembl protein_coding_gene 37905 39464 . - . ID=Physo144567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980011;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 37905 39464 . - . ID=Physo144567;Parent=Physo144567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . exon 37905 39464 . - . ID=Physo144567.1;Parent=Physo144567;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_198 . CDS 38004 39464 . - 0 ID=Physo144567;Parent=Physo144567;rank=1 scaffold_198 . repeat_region 44775 44783 . ? . description=dust scaffold_198 . biological_region 45361 45367 0.999 + . logic_name=eponine scaffold_198 . repeat_region 45541 45549 . ? . description=dust scaffold_198 . biological_region 47603 47607 0.999 + . logic_name=eponine scaffold_198 . biological_region 47640 47643 0.999 + . logic_name=eponine scaffold_198 . repeat_region 48759 48768 . ? . description=dust scaffold_198 . repeat_region 50371 50378 . ? . description=dust scaffold_198 . repeat_region 51158 51165 . ? . description=dust scaffold_198 . repeat_region 52231 52283 . ? . description=dust scaffold_198 ensembl tRNA_gene 52073 52176 . - . ID=EPrPSOG00000000115;biotype=tRNA;description=tRNA-Tyr for anticodon GUA [Source:TRNASCAN_SE%3BAcc:tRNA-Tyr];external_name=tRNA-Tyr;logic_name=ncrna_eg scaffold_198 ensembl transcript 52073 52176 . - . ID=EPrPSOT00000000115;Parent=EPrPSOG00000000115;biotype=tRNA;logic_name=ncrna_eg scaffold_198 . exon 52073 52176 . - . ID=EPrPSOE00000000115;Parent=EPrPSOT00000000115;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_198 ensembl protein_coding_gene 48594 50179 . - . ID=Physo144568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1980012;logic_name=jgi_physo1_1 scaffold_198 ensembl transcript 48594 50179 . - . ID=Physo144568;Parent=Physo144568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_198 . CDS 48594 48699 . - 0 ID=Physo144568;Parent=Physo144568;rank=3 scaffold_198 . exon 48594 48699 . - . ID=Physo144568.3;Parent=Physo144568;constitutive=1;ensembl_phase=2;rank=3 scaffold_198 . CDS 48797 49282 . - 0 ID=Physo144568;Parent=Physo144568;rank=2 scaffold_198 . exon 48797 49282 . - . ID=Physo144568.2;Parent=Physo144568;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_198 . CDS 49362 50179 . - 0 ID=Physo144568;Parent=Physo144568;rank=1 scaffold_198 . exon 49362 50179 . - . ID=Physo144568.1;Parent=Physo144568;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_196 1 53402 scaffold_196 . repeat_region 876 925 . ? . description=dust scaffold_196 . repeat_region 930 2801 . - . description=GypsyPi-1c_I-int scaffold_196 . biological_region 1523 1526 0.999 - . logic_name=eponine scaffold_196 . repeat_region 6615 6893 . ? . description=dust scaffold_196 . repeat_region 6898 8918 . - . description=GypsyPi-1c_I-int scaffold_196 . biological_region 7132 7135 0.999 - . logic_name=eponine scaffold_196 ensembl protein_coding_gene 1699 2717 . - . ID=Physo144533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1960001;logic_name=jgi_physo1_1 scaffold_196 ensembl transcript 1699 2717 . - . ID=Physo144533;Parent=Physo144533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_196 . CDS 1699 1705 . - 0 ID=Physo144533;Parent=Physo144533;rank=2 scaffold_196 . exon 1699 1705 . - . ID=Physo144533.2;Parent=Physo144533;constitutive=1;ensembl_phase=2;rank=2 scaffold_196 . CDS 1726 2717 . - 0 ID=Physo144533;Parent=Physo144533;rank=1 scaffold_196 . exon 1726 2717 . - . ID=Physo144533.1;Parent=Physo144533;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_196 ensembl protein_coding_gene 7308 14519 . - . ID=Physo144534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1960002;logic_name=jgi_physo1_1 scaffold_196 ensembl transcript 7308 14519 . - . ID=Physo144534;Parent=Physo144534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_196 . CDS 7308 7314 . - 0 ID=Physo144534;Parent=Physo144534;rank=11 scaffold_196 . exon 7308 7314 . - . ID=Physo144534.11;Parent=Physo144534;constitutive=1;ensembl_phase=2;rank=11 scaffold_196 . CDS 7335 9068 . - 0 ID=Physo144534;Parent=Physo144534;rank=10 scaffold_196 . exon 7335 9068 . - . ID=Physo144534.10;Parent=Physo144534;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_196 . CDS 9099 9291 . - 0 ID=Physo144534;Parent=Physo144534;rank=9 scaffold_196 . CDS 9333 9932 . - 0 ID=Physo144534;Parent=Physo144534;rank=8 scaffold_196 . CDS 9983 10237 . - 0 ID=Physo144534;Parent=Physo144534;rank=7 scaffold_196 . CDS 10566 10784 . - 0 ID=Physo144534;Parent=Physo144534;rank=6 scaffold_196 . CDS 11024 11122 . - 0 ID=Physo144534;Parent=Physo144534;rank=5 scaffold_196 . CDS 11319 12162 . - 0 ID=Physo144534;Parent=Physo144534;rank=4 scaffold_196 . CDS 12295 13260 . - 0 ID=Physo144534;Parent=Physo144534;rank=3 scaffold_196 . CDS 13305 14057 . - 0 ID=Physo144534;Parent=Physo144534;rank=2 scaffold_196 . CDS 14141 14212 . - 0 ID=Physo144534;Parent=Physo144534;rank=1 scaffold_196 . exon 9099 9291 . - . ID=Physo144534.9;Parent=Physo144534;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_196 . exon 9333 9932 . - . ID=Physo144534.8;Parent=Physo144534;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_196 . exon 9983 10237 . - . ID=Physo144534.7;Parent=Physo144534;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_196 . exon 10566 10784 . - . ID=Physo144534.6;Parent=Physo144534;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_196 . exon 11024 11122 . - . ID=Physo144534.5;Parent=Physo144534;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_196 . exon 11319 12162 . - . ID=Physo144534.4;Parent=Physo144534;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_196 . exon 12295 13260 . - . ID=Physo144534.3;Parent=Physo144534;constitutive=1;rank=3 scaffold_196 . exon 13305 14057 . - . ID=Physo144534.2;Parent=Physo144534;constitutive=1;rank=2 scaffold_196 . exon 14141 14519 . - . ID=Physo144534.1;Parent=Physo144534;constitutive=1;ensembl_phase=-1;rank=1 scaffold_196 ensembl protein_coding_gene 16783 19478 . + . ID=Physo144535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1960003;logic_name=jgi_physo1_1 scaffold_196 ensembl transcript 16783 19478 . + . ID=Physo144535;Parent=Physo144535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_196 . CDS 16783 18105 . + 0 ID=Physo144535;Parent=Physo144535;rank=1 scaffold_196 . exon 16783 18105 . + . ID=Physo144535.1;Parent=Physo144535;constitutive=1;rank=1 scaffold_196 . CDS 18365 18916 . + 0 ID=Physo144535;Parent=Physo144535;rank=2 scaffold_196 . CDS 19029 19478 . + 0 ID=Physo144535;Parent=Physo144535;rank=3 scaffold_196 . repeat_region 18109 18323 . ? . description=dust scaffold_196 . biological_region 19286 19288 0.999 - . logic_name=eponine scaffold_196 . biological_region 20201 20205 0.999 - . logic_name=eponine scaffold_196 . repeat_region 20953 22665 . ? . description=dust scaffold_196 . repeat_region 23563 26702 . ? . description=dust scaffold_196 . repeat_region 26703 44305 . ? . description=dust scaffold_196 ensembl protein_coding_gene 19729 20835 . + . ID=Physo109648;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1960001;logic_name=jgi_physo1_1 scaffold_196 ensembl transcript 19729 20835 . + . ID=Physo109648;Parent=Physo109648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_196 . CDS 19729 20835 . + 0 ID=Physo109648;Parent=Physo109648;rank=1 scaffold_196 . exon 19729 20835 . + . ID=Physo109648.1;Parent=Physo109648;constitutive=1;rank=1 scaffold_196 . exon 18365 18916 . + . ID=Physo144535.2;Parent=Physo144535;constitutive=1;rank=2 scaffold_196 . exon 19029 19478 . + . ID=Physo144535.3;Parent=Physo144535;constitutive=1;rank=3 scaffold_196 ensembl protein_coding_gene 22749 23481 . + . ID=Physo144537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1960005;logic_name=jgi_physo1_1 scaffold_196 ensembl transcript 22749 23481 . + . ID=Physo144537;Parent=Physo144537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_196 . CDS 22749 23416 . + 0 ID=Physo144537;Parent=Physo144537;rank=1 scaffold_196 . exon 22749 23416 . + . ID=Physo144537.1;Parent=Physo144537;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_196 . CDS 23463 23481 . + 0 ID=Physo144537;Parent=Physo144537;rank=2 scaffold_196 . exon 23463 23481 . + . ID=Physo144537.2;Parent=Physo144537;constitutive=1;ensembl_phase=2;rank=2 scaffold_196 . repeat_region 26703 44305 . ? . description=dust scaffold_196 . biological_region 44786 44793 0.999 - . logic_name=eponine scaffold_196 . repeat_region 47017 47070 . ? . description=trf scaffold_196 . repeat_region 47280 47362 . ? . description=trf scaffold_196 . repeat_region 47475 47510 . ? . description=trf scaffold_196 . biological_region 48092 48094 0.999 + . logic_name=eponine scaffold_196 . biological_region 48423 48431 0.999 + . logic_name=eponine scaffold_196 . biological_region 48463 48467 0.999 + . logic_name=eponine scaffold_196 . biological_region 48512 48514 0.999 + . logic_name=eponine scaffold_196 . biological_region 51810 51815 0.999 + . logic_name=eponine scaffold_196 . biological_region 51850 51854 0.999 - . logic_name=eponine scaffold_196 . biological_region 51866 51870 0.999 - . logic_name=eponine scaffold_196 . biological_region 51884 51889 0.999 - . logic_name=eponine scaffold_196 . repeat_region 51887 51923 . ? . description=trf scaffold_196 . biological_region 51899 51899 0.999 - . logic_name=eponine scaffold_196 ensembl protein_coding_gene 49854 50292 . + . ID=Physo144538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1960006;logic_name=jgi_physo1_1 scaffold_196 ensembl transcript 49854 50292 . + . ID=Physo144538;Parent=Physo144538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_196 . CDS 49854 50246 . + 0 ID=Physo144538;Parent=Physo144538;rank=1 scaffold_196 . exon 49854 50246 . + . ID=Physo144538.1;Parent=Physo144538;constitutive=1;rank=1 scaffold_196 . CDS 50266 50292 . + 0 ID=Physo144538;Parent=Physo144538;rank=2 scaffold_196 . exon 50266 50292 . + . ID=Physo144538.2;Parent=Physo144538;constitutive=1;rank=2 scaffold_196 ensembl protein_coding_gene 52941 53396 . + . ID=Physo144539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1960007;logic_name=jgi_physo1_1 scaffold_196 ensembl transcript 52941 53396 . + . ID=Physo144539;Parent=Physo144539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_196 . CDS 52941 53045 . + 0 ID=Physo144539;Parent=Physo144539;rank=1 scaffold_196 . exon 52941 53045 . + . ID=Physo144539.1;Parent=Physo144539;constitutive=1;rank=1 scaffold_196 . CDS 53068 53394 . + 0 ID=Physo144539;Parent=Physo144539;rank=2 scaffold_196 . exon 53068 53396 . + . ID=Physo144539.2;Parent=Physo144539;constitutive=1;ensembl_end_phase=-1;rank=2 ##gff-version 3 ##sequence-region scaffold_195 1 54159 scaffold_195 . repeat_region 752 6535 . ? . description=dust scaffold_195 . repeat_region 6735 7775 . - . description=Polinton-1_PI scaffold_195 . repeat_region 7781 27080 . ? . description=dust scaffold_195 . repeat_region 7781 27080 . ? . description=dust scaffold_195 . repeat_region 27081 34587 . ? . description=dust scaffold_195 ensembl protein_coding_gene 35213 35554 . + . ID=Physo125061;biotype=protein_coding;external_name=estExt_Genewise1.C_1950002;logic_name=jgi_physo1_1 scaffold_195 ensembl transcript 35213 35554 . + . ID=Physo125061;Parent=Physo125061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_195 . exon 35213 35554 . + . ID=Physo125061.1;Parent=Physo125061;constitutive=1;ensembl_phase=-1;rank=1 scaffold_195 . CDS 35354 35554 . + 0 ID=Physo125061;Parent=Physo125061;rank=1 scaffold_195 . repeat_region 35789 36548 . ? . description=dust scaffold_195 . repeat_region 38248 39559 . ? . description=dust scaffold_195 . repeat_region 42308 43025 . ? . description=dust scaffold_195 . repeat_region 44635 45607 . ? . description=dust scaffold_195 ensembl protein_coding_gene 37264 37533 . + . ID=Physo125062;biotype=protein_coding;external_name=estExt_Genewise1.C_1950003;logic_name=jgi_physo1_1 scaffold_195 ensembl transcript 37264 37533 . + . ID=Physo125062;Parent=Physo125062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_195 . exon 37264 37533 . + . ID=Physo125062.1;Parent=Physo125062;constitutive=1;ensembl_phase=-1;rank=1 scaffold_195 . CDS 37270 37533 . + 0 ID=Physo125062;Parent=Physo125062;rank=1 scaffold_195 ensembl protein_coding_gene 37537 37888 . + . ID=Physo125063;biotype=protein_coding;external_name=estExt_Genewise1.C_1950004;logic_name=jgi_physo1_1 scaffold_195 ensembl transcript 37537 37888 . + . ID=Physo125063;Parent=Physo125063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_195 . exon 37537 37888 . + . ID=Physo125063.1;Parent=Physo125063;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_195 . CDS 37585 37824 . + 0 ID=Physo125063;Parent=Physo125063;rank=1 scaffold_195 . repeat_region 53380 53410 . - . description=Polinton-1_PI scaffold_195 . repeat_region 53564 53772 . - . description=Polinton-1_PI scaffold_195 ensembl pseudogene 53297 53744 . - . ID=Physo125064;biotype=pseudogene;external_name=estExt_Genewise1.C_1950005;logic_name=jgi_physo1_1 scaffold_195 ensembl pseudogene 53297 53744 . - . ID=Physo125064;Parent=Physo125064;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_195 . exon 53297 53413 . - . ID=Physo125064.3;Parent=Physo125064;constitutive=1;rank=3 scaffold_195 . exon 53532 53584 . - . ID=Physo125064.2;Parent=Physo125064;constitutive=1;ensembl_phase=1;rank=2 scaffold_195 . exon 53618 53744 . - . ID=Physo125064.1;Parent=Physo125064;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_194 1 56672 scaffold_194 . biological_region 2887 2890 0.999 - . logic_name=eponine scaffold_194 . repeat_region 3861 3870 . ? . description=dust scaffold_194 . repeat_region 4013 4020 . ? . description=dust scaffold_194 . repeat_region 5628 5674 . ? . description=trf scaffold_194 . repeat_region 5629 5674 . ? . description=trf scaffold_194 . repeat_region 5629 5674 . + . description=(CAAT)n scaffold_194 . repeat_region 5638 5674 . ? . description=trf scaffold_194 . repeat_region 7980 8003 . ? . description=trf scaffold_194 ensembl protein_coding_gene 1944 3496 . - . ID=Physo144525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1940001;logic_name=jgi_physo1_1 scaffold_194 ensembl transcript 1944 3496 . - . ID=Physo144525;Parent=Physo144525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_194 . CDS 1944 1982 . - 0 ID=Physo144525;Parent=Physo144525;rank=5 scaffold_194 . exon 1944 1982 . - . ID=Physo144525.5;Parent=Physo144525;constitutive=1;rank=5 scaffold_194 . CDS 2240 2330 . - 0 ID=Physo144525;Parent=Physo144525;rank=4 scaffold_194 . exon 2240 2330 . - . ID=Physo144525.4;Parent=Physo144525;constitutive=1;ensembl_phase=2;rank=4 scaffold_194 . CDS 2409 3036 . - 0 ID=Physo144525;Parent=Physo144525;rank=3 scaffold_194 . exon 2409 3036 . - . ID=Physo144525.3;Parent=Physo144525;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_194 . CDS 3116 3338 . - 0 ID=Physo144525;Parent=Physo144525;rank=2 scaffold_194 . exon 3116 3338 . - . ID=Physo144525.2;Parent=Physo144525;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_194 . CDS 3416 3496 . - 0 ID=Physo144525;Parent=Physo144525;rank=1 scaffold_194 . exon 3416 3496 . - . ID=Physo144525.1;Parent=Physo144525;constitutive=1;rank=1 scaffold_194 ensembl protein_coding_gene 5791 6944 . - . ID=Physo144526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1940002;logic_name=jgi_physo1_1 scaffold_194 ensembl transcript 5791 6944 . - . ID=Physo144526;Parent=Physo144526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_194 . CDS 5791 6396 . - 0 ID=Physo144526;Parent=Physo144526;rank=2 scaffold_194 . exon 5791 6396 . - . ID=Physo144526.2;Parent=Physo144526;constitutive=1;rank=2 scaffold_194 . CDS 6645 6944 . - 0 ID=Physo144526;Parent=Physo144526;rank=1 scaffold_194 . exon 6645 6944 . - . ID=Physo144526.1;Parent=Physo144526;constitutive=1;rank=1 scaffold_194 . repeat_region 15794 16014 . - . description=Sola3-3_PS scaffold_194 . repeat_region 16015 16055 . - . description=Sola3-3_PS scaffold_194 . repeat_region 16825 17069 . - . description=Sola3-3_PS scaffold_194 ensembl protein_coding_gene 11257 11517 . - . ID=Physo125051;biotype=protein_coding;external_name=estExt_Genewise1.C_1940004;logic_name=jgi_physo1_1 scaffold_194 ensembl transcript 11257 11517 . - . ID=Physo125051;Parent=Physo125051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_194 . CDS 11257 11475 . - 0 ID=Physo125051;Parent=Physo125051;rank=1 scaffold_194 . exon 11257 11517 . - . ID=Physo125051.1;Parent=Physo125051;constitutive=1;ensembl_phase=-1;rank=1 scaffold_194 . biological_region 19216 19222 0.999 - . logic_name=eponine scaffold_194 . biological_region 19925 19928 0.999 - . logic_name=eponine scaffold_194 . biological_region 19984 19986 0.999 + . logic_name=eponine scaffold_194 . biological_region 20006 20009 0.999 + . logic_name=eponine scaffold_194 . biological_region 20560 20561 0.999 - . logic_name=eponine scaffold_194 . repeat_region 21070 23398 . - . description=GypsyPi-1c_I-int scaffold_194 . biological_region 21817 21819 0.999 + . logic_name=eponine scaffold_194 . biological_region 23391 23394 0.999 + . logic_name=eponine scaffold_194 . repeat_region 25857 28337 . ? . description=dust scaffold_194 . repeat_region 28338 38506 . ? . description=dust scaffold_194 ensembl protein_coding_gene 19911 25321 . - . ID=Physo144527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1940003;logic_name=jgi_physo1_1 scaffold_194 ensembl transcript 19911 25321 . - . ID=Physo144527;Parent=Physo144527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_194 . CDS 19911 20273 . - 0 ID=Physo144527;Parent=Physo144527;rank=8 scaffold_194 . exon 19911 20273 . - . ID=Physo144527.8;Parent=Physo144527;constitutive=1;rank=8 scaffold_194 . CDS 20368 20773 . - 0 ID=Physo144527;Parent=Physo144527;rank=7 scaffold_194 . exon 20368 20773 . - . ID=Physo144527.7;Parent=Physo144527;constitutive=1;ensembl_phase=2;rank=7 scaffold_194 . CDS 21010 21443 . - 0 ID=Physo144527;Parent=Physo144527;rank=6 scaffold_194 . exon 21010 21443 . - . ID=Physo144527.6;Parent=Physo144527;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_194 . CDS 21624 22485 . - 0 ID=Physo144527;Parent=Physo144527;rank=5 scaffold_194 . exon 21624 22485 . - . ID=Physo144527.5;Parent=Physo144527;constitutive=1;ensembl_phase=2;rank=5 scaffold_194 . CDS 22719 23499 . - 0 ID=Physo144527;Parent=Physo144527;rank=4 scaffold_194 . exon 22719 23499 . - . ID=Physo144527.4;Parent=Physo144527;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_194 . CDS 23528 24263 . - 0 ID=Physo144527;Parent=Physo144527;rank=3 scaffold_194 . exon 23528 24263 . - . ID=Physo144527.3;Parent=Physo144527;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_194 . CDS 24591 25048 . - 0 ID=Physo144527;Parent=Physo144527;rank=2 scaffold_194 . exon 24591 25048 . - . ID=Physo144527.2;Parent=Physo144527;constitutive=1;ensembl_phase=1;rank=2 scaffold_194 . CDS 25174 25321 . - 0 ID=Physo144527;Parent=Physo144527;rank=1 scaffold_194 . exon 25174 25321 . - . ID=Physo144527.1;Parent=Physo144527;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_194 . repeat_region 28338 38506 . ? . description=dust scaffold_194 . biological_region 39610 39614 0.999 - . logic_name=eponine scaffold_194 . repeat_region 39883 39982 . ? . description=trf scaffold_194 . biological_region 43638 43640 0.999 + . logic_name=eponine scaffold_194 . biological_region 43666 43668 0.999 + . logic_name=eponine scaffold_194 . biological_region 43996 43997 0.999 - . logic_name=eponine scaffold_194 . biological_region 44003 44008 0.999 + . logic_name=eponine scaffold_194 . biological_region 44022 44025 0.999 - . logic_name=eponine scaffold_194 . biological_region 44043 44045 0.999 - . logic_name=eponine scaffold_194 . repeat_region 44096 44145 . ? . description=dust scaffold_194 . biological_region 44521 44523 0.999 + . logic_name=eponine scaffold_194 . biological_region 44567 44572 0.999 + . logic_name=eponine scaffold_194 . biological_region 44584 44584 0.999 - . logic_name=eponine scaffold_194 . biological_region 44624 44625 0.999 - . logic_name=eponine scaffold_194 . repeat_region 44749 44773 . ? . description=dust scaffold_194 . repeat_region 44903 44932 . ? . description=trf scaffold_194 . repeat_region 44903 44937 . ? . description=trf scaffold_194 . biological_region 45397 45399 0.999 - . logic_name=eponine scaffold_194 . biological_region 45759 45763 0.999 - . logic_name=eponine scaffold_194 . repeat_region 45789 45829 . ? . description=trf scaffold_194 . biological_region 45821 45823 0.999 + . logic_name=eponine scaffold_194 . biological_region 46791 46793 0.999 - . logic_name=eponine scaffold_194 ensembl protein_coding_gene 39620 40912 . + . ID=Physo144528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1940004;logic_name=jgi_physo1_1 scaffold_194 ensembl transcript 39620 40912 . + . ID=Physo144528;Parent=Physo144528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_194 . CDS 39620 40912 . + 0 ID=Physo144528;Parent=Physo144528;rank=1 scaffold_194 . exon 39620 40912 . + . ID=Physo144528.1;Parent=Physo144528;constitutive=1;rank=1 scaffold_194 ensembl protein_coding_gene 41188 45115 . - . ID=Physo144529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1940005;logic_name=jgi_physo1_1 scaffold_194 ensembl transcript 41188 45115 . - . ID=Physo144529;Parent=Physo144529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_194 . CDS 41188 41598 . - 0 ID=Physo144529;Parent=Physo144529;rank=4 scaffold_194 . exon 41188 41598 . - . ID=Physo144529.4;Parent=Physo144529;constitutive=1;rank=4 scaffold_194 . CDS 41770 42278 . - 0 ID=Physo144529;Parent=Physo144529;rank=3 scaffold_194 . exon 41770 42278 . - . ID=Physo144529.3;Parent=Physo144529;constitutive=1;ensembl_phase=1;rank=3 scaffold_194 . CDS 42803 44051 . - 0 ID=Physo144529;Parent=Physo144529;rank=2 scaffold_194 . exon 42803 44051 . - . ID=Physo144529.2;Parent=Physo144529;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_194 . CDS 44161 45000 . - 0 ID=Physo144529;Parent=Physo144529;rank=1 scaffold_194 . exon 44161 45115 . - . ID=Physo144529.1;Parent=Physo144529;constitutive=1;ensembl_phase=-1;rank=1 scaffold_194 ensembl protein_coding_gene 45343 47025 . - . ID=Physo144530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1940006;logic_name=jgi_physo1_1 scaffold_194 ensembl transcript 45343 47025 . - . ID=Physo144530;Parent=Physo144530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_194 . CDS 45343 47025 . - 0 ID=Physo144530;Parent=Physo144530;rank=1 scaffold_194 . exon 45343 47025 . - . ID=Physo144530.1;Parent=Physo144530;constitutive=1;rank=1 scaffold_194 ensembl protein_coding_gene 47571 51488 . - . ID=Physo144531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1940007;logic_name=jgi_physo1_1 scaffold_194 ensembl transcript 47571 51488 . - . ID=Physo144531;Parent=Physo144531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_194 . CDS 47571 47597 . - 0 ID=Physo144531;Parent=Physo144531;rank=10 scaffold_194 . exon 47571 47597 . - . ID=Physo144531.10;Parent=Physo144531;constitutive=1;rank=10 scaffold_194 . CDS 47846 48248 . - 0 ID=Physo144531;Parent=Physo144531;rank=9 scaffold_194 . exon 47846 48248 . - . ID=Physo144531.9;Parent=Physo144531;constitutive=1;ensembl_phase=2;rank=9 scaffold_194 . CDS 48308 49118 . - 0 ID=Physo144531;Parent=Physo144531;rank=8 scaffold_194 . exon 48308 49118 . - . ID=Physo144531.8;Parent=Physo144531;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_194 . CDS 49282 49292 . - 0 ID=Physo144531;Parent=Physo144531;rank=7 scaffold_194 . exon 49282 49292 . - . ID=Physo144531.7;Parent=Physo144531;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_194 . CDS 49497 49557 . - 0 ID=Physo144531;Parent=Physo144531;rank=6 scaffold_194 . exon 49497 49557 . - . ID=Physo144531.6;Parent=Physo144531;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_194 . CDS 49707 49800 . - 0 ID=Physo144531;Parent=Physo144531;rank=5 scaffold_194 . exon 49707 49800 . - . ID=Physo144531.5;Parent=Physo144531;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_194 . CDS 49861 50748 . - 0 ID=Physo144531;Parent=Physo144531;rank=4 scaffold_194 . exon 49861 50748 . - . ID=Physo144531.4;Parent=Physo144531;constitutive=1;rank=4 scaffold_194 . CDS 50823 51119 . - 0 ID=Physo144531;Parent=Physo144531;rank=3 scaffold_194 . exon 50823 51119 . - . ID=Physo144531.3;Parent=Physo144531;constitutive=1;rank=3 scaffold_194 . CDS 51252 51366 . - 0 ID=Physo144531;Parent=Physo144531;rank=2 scaffold_194 . exon 51252 51366 . - . ID=Physo144531.2;Parent=Physo144531;constitutive=1;ensembl_phase=2;rank=2 scaffold_194 . CDS 51439 51488 . - 0 ID=Physo144531;Parent=Physo144531;rank=1 scaffold_194 . exon 51439 51488 . - . ID=Physo144531.1;Parent=Physo144531;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_194 ensembl protein_coding_gene 53016 54273 . - . ID=Physo144532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1940008;logic_name=jgi_physo1_1 scaffold_194 ensembl transcript 53016 54273 . - . ID=Physo144532;Parent=Physo144532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_194 . CDS 53016 53466 . - 0 ID=Physo144532;Parent=Physo144532;rank=2 scaffold_194 . exon 53016 53466 . - . ID=Physo144532.2;Parent=Physo144532;constitutive=1;ensembl_phase=2;rank=2 scaffold_194 . CDS 53531 54000 . - 0 ID=Physo144532;Parent=Physo144532;rank=1 scaffold_194 . exon 53531 54273 . - . ID=Physo144532.1;Parent=Physo144532;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_192 1 57096 scaffold_192 . biological_region 807 809 0.999 + . logic_name=eponine scaffold_192 . repeat_region 1116 2595 . ? . description=dust scaffold_192 . repeat_region 3959 7425 . ? . description=dust scaffold_192 . repeat_region 8600 8680 . ? . description=trf scaffold_192 ensembl protein_coding_gene 7424 7645 . + . ID=Physo125010;biotype=protein_coding;external_name=estExt_Genewise1.C_1920003;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 7424 7645 . + . ID=Physo125010;Parent=Physo125010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . CDS 7424 7645 . + 0 ID=Physo125010;Parent=Physo125010;rank=1 scaffold_192 . exon 7424 7645 . + . ID=Physo125010.1;Parent=Physo125010;constitutive=1;rank=1 scaffold_192 ensembl protein_coding_gene 65 3070 . - . ID=Physo144508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1920001;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 65 3070 . - . ID=Physo144508;Parent=Physo144508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . exon 65 1110 . - . ID=Physo144508.2;Parent=Physo144508;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_192 . CDS 67 1110 . - 0 ID=Physo144508;Parent=Physo144508;rank=2 scaffold_192 . CDS 2624 3070 . - 0 ID=Physo144508;Parent=Physo144508;rank=1 scaffold_192 . exon 2624 3070 . - . ID=Physo144508.1;Parent=Physo144508;constitutive=1;rank=1 scaffold_192 ensembl protein_coding_gene 7712 8593 . + . ID=Physo144509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1920002;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 7712 8593 . + . ID=Physo144509;Parent=Physo144509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . CDS 7712 8593 . + 0 ID=Physo144509;Parent=Physo144509;rank=1 scaffold_192 . exon 7712 8593 . + . ID=Physo144509.1;Parent=Physo144509;constitutive=1;rank=1 scaffold_192 ensembl protein_coding_gene 9202 12096 . + . ID=Physo144510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1920003;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 9202 12096 . + . ID=Physo144510;Parent=Physo144510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . CDS 9202 9257 . + 0 ID=Physo144510;Parent=Physo144510;rank=1 scaffold_192 . exon 9202 9257 . + . ID=Physo144510.1;Parent=Physo144510;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_192 . CDS 9662 10232 . + 0 ID=Physo144510;Parent=Physo144510;rank=2 scaffold_192 . CDS 10339 10663 . + 0 ID=Physo144510;Parent=Physo144510;rank=3 scaffold_192 . CDS 10855 11331 . + 0 ID=Physo144510;Parent=Physo144510;rank=4 scaffold_192 . CDS 11501 11568 . + 0 ID=Physo144510;Parent=Physo144510;rank=5 scaffold_192 . CDS 11645 11928 . + 0 ID=Physo144510;Parent=Physo144510;rank=6 scaffold_192 . CDS 12069 12096 . + 0 ID=Physo144510;Parent=Physo144510;rank=7 scaffold_192 . exon 9662 10232 . + . ID=Physo144510.2;Parent=Physo144510;constitutive=1;ensembl_phase=2;rank=2 scaffold_192 . exon 10339 10663 . + . ID=Physo144510.3;Parent=Physo144510;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_192 . exon 10855 11331 . + . ID=Physo144510.4;Parent=Physo144510;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_192 . exon 11501 11568 . + . ID=Physo144510.5;Parent=Physo144510;constitutive=1;ensembl_phase=1;rank=5 scaffold_192 . exon 11645 11928 . + . ID=Physo144510.6;Parent=Physo144510;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_192 . exon 12069 12096 . + . ID=Physo144510.7;Parent=Physo144510;constitutive=1;ensembl_phase=2;rank=7 scaffold_192 ensembl protein_coding_gene 14429 17143 . + . ID=Physo144511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1920004;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 14429 17143 . + . ID=Physo144511;Parent=Physo144511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . CDS 14429 15404 . + 0 ID=Physo144511;Parent=Physo144511;rank=1 scaffold_192 . exon 14429 15404 . + . ID=Physo144511.1;Parent=Physo144511;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_192 . CDS 16953 17143 . + 0 ID=Physo144511;Parent=Physo144511;rank=2 scaffold_192 . exon 16953 17143 . + . ID=Physo144511.2;Parent=Physo144511;constitutive=1;ensembl_phase=1;rank=2 scaffold_192 ensembl protein_coding_gene 18495 21557 . + . ID=Physo144512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1920005;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 18495 21557 . + . ID=Physo144512;Parent=Physo144512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . CDS 18495 19043 . + 0 ID=Physo144512;Parent=Physo144512;rank=1 scaffold_192 . exon 18495 19043 . + . ID=Physo144512.1;Parent=Physo144512;constitutive=1;rank=1 scaffold_192 . CDS 20033 21242 . + 0 ID=Physo144512;Parent=Physo144512;rank=2 scaffold_192 . CDS 21318 21483 . + 0 ID=Physo144512;Parent=Physo144512;rank=3 scaffold_192 . CDS 21521 21557 . + 0 ID=Physo144512;Parent=Physo144512;rank=4 scaffold_192 . repeat_region 19061 19977 . ? . description=dust scaffold_192 . biological_region 21055 21057 0.999 - . logic_name=eponine scaffold_192 . repeat_region 22073 28549 . ? . description=dust scaffold_192 . repeat_region 28550 44634 . ? . description=dust scaffold_192 ensembl protein_coding_gene 21574 21813 . + . ID=Physo125016;biotype=protein_coding;external_name=estExt_Genewise1.C_1920009;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 21574 21813 . + . ID=Physo125016;Parent=Physo125016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . exon 21574 21813 . + . ID=Physo125016.1;Parent=Physo125016;constitutive=1;ensembl_phase=-1;rank=1 scaffold_192 . CDS 21577 21813 . + 0 ID=Physo125016;Parent=Physo125016;rank=1 scaffold_192 . exon 20033 21242 . + . ID=Physo144512.2;Parent=Physo144512;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_192 . exon 21318 21483 . + . ID=Physo144512.3;Parent=Physo144512;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_192 . exon 21521 21557 . + . ID=Physo144512.4;Parent=Physo144512;constitutive=1;ensembl_phase=2;rank=4 scaffold_192 . repeat_region 28550 44634 . ? . description=dust scaffold_192 . biological_region 45278 45280 0.999 + . logic_name=eponine scaffold_192 . repeat_region 46670 47259 . ? . description=dust scaffold_192 ensembl protein_coding_gene 45001 47517 . - . ID=Physo144513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1920006;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 45001 47517 . - . ID=Physo144513;Parent=Physo144513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . CDS 45001 45028 . - 0 ID=Physo144513;Parent=Physo144513;rank=4 scaffold_192 . exon 45001 45028 . - . ID=Physo144513.4;Parent=Physo144513;constitutive=1;ensembl_phase=2;rank=4 scaffold_192 . CDS 45169 45834 . - 0 ID=Physo144513;Parent=Physo144513;rank=3 scaffold_192 . exon 45169 45834 . - . ID=Physo144513.3;Parent=Physo144513;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_192 . CDS 45864 46630 . - 0 ID=Physo144513;Parent=Physo144513;rank=2 scaffold_192 . exon 45864 46630 . - . ID=Physo144513.2;Parent=Physo144513;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_192 . CDS 47281 47517 . - 0 ID=Physo144513;Parent=Physo144513;rank=1 scaffold_192 . exon 47281 47517 . - . ID=Physo144513.1;Parent=Physo144513;constitutive=1;rank=1 scaffold_192 ensembl protein_coding_gene 47950 48559 . + . ID=Physo144514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1920007;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 47950 48559 . + . ID=Physo144514;Parent=Physo144514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . CDS 47950 47955 . + 0 ID=Physo144514;Parent=Physo144514;rank=1 scaffold_192 . exon 47950 47955 . + . ID=Physo144514.1;Parent=Physo144514;constitutive=1;rank=1 scaffold_192 . CDS 48089 48559 . + 0 ID=Physo144514;Parent=Physo144514;rank=2 scaffold_192 . exon 48089 48559 . + . ID=Physo144514.2;Parent=Physo144514;constitutive=1;rank=2 scaffold_192 ensembl protein_coding_gene 50526 54804 . + . ID=Physo144515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1920008;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 50526 54804 . + . ID=Physo144515;Parent=Physo144515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . CDS 50526 50642 . + 0 ID=Physo144515;Parent=Physo144515;rank=1 scaffold_192 . exon 50526 50642 . + . ID=Physo144515.1;Parent=Physo144515;constitutive=1;rank=1 scaffold_192 . CDS 50951 52246 . + 0 ID=Physo144515;Parent=Physo144515;rank=2 scaffold_192 . exon 50951 52246 . + . ID=Physo144515.2;Parent=Physo144515;constitutive=1;rank=2 scaffold_192 . CDS 52358 52918 . + 0 ID=Physo144515;Parent=Physo144515;rank=3 scaffold_192 . exon 52358 52918 . + . ID=Physo144515.3;Parent=Physo144515;constitutive=1;rank=3 scaffold_192 . CDS 52994 54176 . + 0 ID=Physo144515;Parent=Physo144515;rank=4 scaffold_192 . exon 52994 54176 . + . ID=Physo144515.4;Parent=Physo144515;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_192 . CDS 54500 54804 . + 0 ID=Physo144515;Parent=Physo144515;rank=5 scaffold_192 . exon 54500 54804 . + . ID=Physo144515.5;Parent=Physo144515;constitutive=1;ensembl_phase=1;rank=5 scaffold_192 ensembl protein_coding_gene 55081 57002 . - . ID=Physo144516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1920009;logic_name=jgi_physo1_1 scaffold_192 ensembl transcript 55081 57002 . - . ID=Physo144516;Parent=Physo144516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_192 . CDS 55081 55815 . - 0 ID=Physo144516;Parent=Physo144516;rank=4 scaffold_192 . exon 55081 55815 . - . ID=Physo144516.4;Parent=Physo144516;constitutive=1;rank=4 scaffold_192 . CDS 55856 55919 . - 0 ID=Physo144516;Parent=Physo144516;rank=3 scaffold_192 . exon 55856 55919 . - . ID=Physo144516.3;Parent=Physo144516;constitutive=1;ensembl_phase=2;rank=3 scaffold_192 . CDS 55984 56801 . - 0 ID=Physo144516;Parent=Physo144516;rank=2 scaffold_192 . exon 55984 56801 . - . ID=Physo144516.2;Parent=Physo144516;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_192 . CDS 56838 57002 . - 0 ID=Physo144516;Parent=Physo144516;rank=1 scaffold_192 . exon 56838 57002 . - . ID=Physo144516.1;Parent=Physo144516;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_193 1 58765 scaffold_193 . repeat_region 1959 2006 . ? . description=trf scaffold_193 . repeat_region 1968 2008 . ? . description=trf scaffold_193 . biological_region 2092 2099 0.999 - . logic_name=eponine scaffold_193 . repeat_region 2149 2195 . ? . description=trf scaffold_193 . biological_region 2177 2182 0.999 + . logic_name=eponine scaffold_193 . biological_region 2194 2200 0.999 - . logic_name=eponine scaffold_193 . biological_region 4123 4126 0.999 + . logic_name=eponine scaffold_193 . biological_region 4250 4252 0.999 + . logic_name=eponine scaffold_193 . biological_region 4315 4318 0.999 - . logic_name=eponine scaffold_193 . repeat_region 4820 7190 . + . description=GypsyPi-1c_I-int scaffold_193 . repeat_region 7459 7737 . + . description=GypsyPi-1c_I-int scaffold_193 . biological_region 8338 8343 0.999 - . logic_name=eponine scaffold_193 . biological_region 8879 8884 0.999 + . logic_name=eponine scaffold_193 . biological_region 8979 8982 0.999 - . logic_name=eponine scaffold_193 . biological_region 8996 9002 0.999 - . logic_name=eponine scaffold_193 . repeat_region 9341 9356 . ? . description=dust scaffold_193 ensembl protein_coding_gene 4449 7501 . + . ID=Physo144517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1930001;logic_name=jgi_physo1_1 scaffold_193 ensembl transcript 4449 7501 . + . ID=Physo144517;Parent=Physo144517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_193 . CDS 4449 4898 . + 0 ID=Physo144517;Parent=Physo144517;rank=1 scaffold_193 . exon 4449 4898 . + . ID=Physo144517.1;Parent=Physo144517;constitutive=1;rank=1 scaffold_193 . CDS 4931 5662 . + 0 ID=Physo144517;Parent=Physo144517;rank=2 scaffold_193 . exon 4931 5662 . + . ID=Physo144517.2;Parent=Physo144517;constitutive=1;rank=2 scaffold_193 . CDS 5740 6381 . + 0 ID=Physo144517;Parent=Physo144517;rank=3 scaffold_193 . exon 5740 6381 . + . ID=Physo144517.3;Parent=Physo144517;constitutive=1;rank=3 scaffold_193 . CDS 6565 7180 . + 0 ID=Physo144517;Parent=Physo144517;rank=4 scaffold_193 . exon 6565 7180 . + . ID=Physo144517.4;Parent=Physo144517;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_193 . CDS 7241 7454 . + 0 ID=Physo144517;Parent=Physo144517;rank=5 scaffold_193 . exon 7241 7454 . + . ID=Physo144517.5;Parent=Physo144517;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_193 . CDS 7495 7501 . + 0 ID=Physo144517;Parent=Physo144517;rank=6 scaffold_193 . exon 7495 7501 . + . ID=Physo144517.6;Parent=Physo144517;constitutive=1;ensembl_phase=2;rank=6 scaffold_193 ensembl protein_coding_gene 7754 9239 . - . ID=Physo144518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1930002;logic_name=jgi_physo1_1 scaffold_193 ensembl transcript 7754 9239 . - . ID=Physo144518;Parent=Physo144518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_193 . CDS 7754 7942 . - 0 ID=Physo144518;Parent=Physo144518;rank=4 scaffold_193 . exon 7754 7942 . - . ID=Physo144518.4;Parent=Physo144518;constitutive=1;rank=4 scaffold_193 . CDS 8013 8069 . - 0 ID=Physo144518;Parent=Physo144518;rank=3 scaffold_193 . exon 8013 8069 . - . ID=Physo144518.3;Parent=Physo144518;constitutive=1;rank=3 scaffold_193 . CDS 8228 8551 . - 0 ID=Physo144518;Parent=Physo144518;rank=2 scaffold_193 . exon 8228 8551 . - . ID=Physo144518.2;Parent=Physo144518;constitutive=1;rank=2 scaffold_193 . CDS 8772 9239 . - 0 ID=Physo144518;Parent=Physo144518;rank=1 scaffold_193 . exon 8772 9239 . - . ID=Physo144518.1;Parent=Physo144518;constitutive=1;rank=1 scaffold_193 ensembl protein_coding_gene 13001 21782 . - . ID=Physo144519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1930003;logic_name=jgi_physo1_1 scaffold_193 ensembl transcript 13001 21782 . - . ID=Physo144519;Parent=Physo144519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_193 . CDS 13001 14296 . - 0 ID=Physo144519;Parent=Physo144519;rank=4 scaffold_193 . exon 13001 14296 . - . ID=Physo144519.4;Parent=Physo144519;constitutive=1;rank=4 scaffold_193 . CDS 14361 14826 . - 0 ID=Physo144519;Parent=Physo144519;rank=3 scaffold_193 . exon 14361 14826 . - . ID=Physo144519.3;Parent=Physo144519;constitutive=1;ensembl_phase=2;rank=3 scaffold_193 . CDS 15187 15546 . - 0 ID=Physo144519;Parent=Physo144519;rank=2 scaffold_193 . exon 15187 15546 . - . ID=Physo144519.2;Parent=Physo144519;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_193 . CDS 15934 21782 . - 0 ID=Physo144519;Parent=Physo144519;rank=1 scaffold_193 . exon 15934 21782 . - . ID=Physo144519.1;Parent=Physo144519;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_193 . repeat_region 18918 20666 . ? . description=trf scaffold_193 . repeat_region 19122 19802 . ? . description=trf scaffold_193 . repeat_region 19451 21209 . ? . description=trf scaffold_193 . repeat_region 19766 20290 . ? . description=trf scaffold_193 . repeat_region 19783 20452 . ? . description=trf scaffold_193 . repeat_region 20663 20705 . ? . description=trf scaffold_193 . repeat_region 20663 20705 . ? . description=trf scaffold_193 . repeat_region 20680 20983 . ? . description=trf scaffold_193 . repeat_region 20680 21623 . ? . description=trf scaffold_193 . repeat_region 20781 21856 . ? . description=trf scaffold_193 . repeat_region 21323 21863 . ? . description=trf scaffold_193 . biological_region 21909 21913 0.999 - . logic_name=eponine scaffold_193 . biological_region 22133 22136 0.999 + . logic_name=eponine scaffold_193 . repeat_region 22932 22981 . ? . description=dust scaffold_193 . biological_region 23644 23647 0.999 - . logic_name=eponine scaffold_193 . biological_region 23867 23871 0.999 + . logic_name=eponine scaffold_193 . repeat_region 23910 24018 . ? . description=trf scaffold_193 . repeat_region 24702 24711 . ? . description=dust scaffold_193 . repeat_region 24992 25041 . ? . description=dust scaffold_193 . repeat_region 25142 25555 . ? . description=trf scaffold_193 . repeat_region 25310 25754 . ? . description=trf scaffold_193 . biological_region 25329 25332 0.999 + . logic_name=eponine scaffold_193 . biological_region 25483 25483 0.999 + . logic_name=eponine scaffold_193 . repeat_region 25518 26043 . ? . description=trf scaffold_193 . repeat_region 26058 26107 . ? . description=dust scaffold_193 . repeat_region 27174 27181 . ? . description=dust scaffold_193 ensembl protein_coding_gene 24719 26053 . - . ID=Physo144520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1930004;logic_name=jgi_physo1_1 scaffold_193 ensembl transcript 24719 26053 . - . ID=Physo144520;Parent=Physo144520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_193 . CDS 24719 24788 . - 0 ID=Physo144520;Parent=Physo144520;rank=2 scaffold_193 . exon 24719 24788 . - . ID=Physo144520.2;Parent=Physo144520;constitutive=1;ensembl_phase=2;rank=2 scaffold_193 . CDS 25071 26053 . - 0 ID=Physo144520;Parent=Physo144520;rank=1 scaffold_193 . exon 25071 26053 . - . ID=Physo144520.1;Parent=Physo144520;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_193 ensembl protein_coding_gene 35994 37399 . - . ID=Physo109645;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1930001;logic_name=jgi_physo1_1 scaffold_193 ensembl transcript 35994 37399 . - . ID=Physo109645;Parent=Physo109645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_193 . exon 35994 37191 . - . ID=Physo109645.2;Parent=Physo109645;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_193 . CDS 36418 37191 . - 0 ID=Physo109645;Parent=Physo109645;rank=2 scaffold_193 . CDS 37349 37399 . - 0 ID=Physo109645;Parent=Physo109645;rank=1 scaffold_193 . exon 37349 37399 . - . ID=Physo109645.1;Parent=Physo109645;constitutive=1;rank=1 scaffold_193 ensembl protein_coding_gene 38328 39599 . - . ID=Physo109646;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1930002;logic_name=jgi_physo1_1 scaffold_193 ensembl transcript 38328 39599 . - . ID=Physo109646;Parent=Physo109646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_193 . exon 38328 39494 . - . ID=Physo109646.2;Parent=Physo109646;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_193 . CDS 38562 39494 . - 0 ID=Physo109646;Parent=Physo109646;rank=2 scaffold_193 . CDS 39519 39599 . - 0 ID=Physo109646;Parent=Physo109646;rank=1 scaffold_193 ensembl protein_coding_gene 37870 38097 . + . ID=Physo125037;biotype=protein_coding;external_name=estExt_Genewise1.C_1930015;logic_name=jgi_physo1_1 scaffold_193 ensembl transcript 37870 38097 . + . ID=Physo125037;Parent=Physo125037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_193 . exon 37870 38097 . + . ID=Physo125037.1;Parent=Physo125037;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_193 . CDS 37872 38096 . + 0 ID=Physo125037;Parent=Physo125037;rank=1 scaffold_193 ensembl protein_coding_gene 34653 35892 . - . ID=Physo144521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1930005;logic_name=jgi_physo1_1 scaffold_193 ensembl transcript 34653 35892 . - . ID=Physo144521;Parent=Physo144521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_193 . CDS 34653 35230 . - 0 ID=Physo144521;Parent=Physo144521;rank=3 scaffold_193 . exon 34653 35230 . - . ID=Physo144521.3;Parent=Physo144521;constitutive=1;ensembl_phase=1;rank=3 scaffold_193 . CDS 35312 35714 . - 0 ID=Physo144521;Parent=Physo144521;rank=2 scaffold_193 . exon 35312 35714 . - . ID=Physo144521.2;Parent=Physo144521;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_193 . CDS 35794 35844 . - 0 ID=Physo144521;Parent=Physo144521;rank=1 scaffold_193 . exon 35794 35892 . - . ID=Physo144521.1;Parent=Physo144521;constitutive=1;ensembl_phase=-1;rank=1 scaffold_193 . repeat_region 39795 39827 . ? . description=trf scaffold_193 . biological_region 40960 40965 0.999 - . logic_name=eponine scaffold_193 . repeat_region 44389 44498 . - . description=Gypsy-2-I_PI-int scaffold_193 . repeat_region 44771 44820 . ? . description=dust scaffold_193 . repeat_region 45666 46806 . ? . description=dust scaffold_193 . repeat_region 46839 47885 . - . description=Gypsy-2-I_PI-int scaffold_193 . repeat_region 48135 48184 . ? . description=dust scaffold_193 . repeat_region 48232 48392 . - . description=Gypsy-2-I_PI-int scaffold_193 . repeat_region 48800 49451 . - . description=Gypsy-2-I_PI-int scaffold_193 . exon 39519 39599 . - . ID=Physo109646.1;Parent=Physo109646;constitutive=1;rank=1 scaffold_193 ensembl protein_coding_gene 39712 40929 . - . ID=Physo109647;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1930003;logic_name=jgi_physo1_1 scaffold_193 ensembl transcript 39712 40929 . - . ID=Physo109647;Parent=Physo109647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_193 . exon 39712 40816 . - . ID=Physo109647.2;Parent=Physo109647;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_193 . CDS 39883 40755 . - 0 ID=Physo109647;Parent=Physo109647;rank=1 scaffold_193 . exon 40894 40929 . - . ID=Physo109647.1;Parent=Physo109647;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_191 1 59032 scaffold_191 . biological_region 2140 2144 0.999 + . logic_name=eponine scaffold_191 . biological_region 2214 2220 0.999 - . logic_name=eponine scaffold_191 . biological_region 2270 2274 0.999 + . logic_name=eponine scaffold_191 . biological_region 2613 2615 0.999 + . logic_name=eponine scaffold_191 . biological_region 2652 2655 0.999 - . logic_name=eponine scaffold_191 . biological_region 2685 2690 0.999 - . logic_name=eponine scaffold_191 . biological_region 2721 2725 0.999 - . logic_name=eponine scaffold_191 . biological_region 3178 3178 0.999 + . logic_name=eponine scaffold_191 . biological_region 3252 3252 0.999 - . logic_name=eponine scaffold_191 . biological_region 3941 3941 0.999 + . logic_name=eponine scaffold_191 . biological_region 5229 5235 0.999 + . logic_name=eponine scaffold_191 . biological_region 5257 5260 0.999 + . logic_name=eponine scaffold_191 . biological_region 6263 6266 0.999 - . logic_name=eponine scaffold_191 . repeat_region 6885 6920 . ? . description=trf scaffold_191 ensembl protein_coding_gene 2566 4225 . + . ID=Physo109642;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1910001;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 2566 4225 . + . ID=Physo109642;Parent=Physo109642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 2566 4068 . + 0 ID=Physo109642;Parent=Physo109642;rank=1 scaffold_191 . exon 2566 4225 . + . ID=Physo109642.1;Parent=Physo109642;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_191 ensembl protein_coding_gene 6547 7450 . + . ID=Physo109643;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1910002;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 6547 7450 . + . ID=Physo109643;Parent=Physo109643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . exon 6547 6654 . + . ID=Physo109643.1;Parent=Physo109643;constitutive=1;ensembl_phase=-1;rank=1 scaffold_191 . CDS 6583 6654 . + 0 ID=Physo109643;Parent=Physo109643;rank=1 scaffold_191 . CDS 6676 7272 . + 0 ID=Physo109643;Parent=Physo109643;rank=2 scaffold_191 . exon 6676 7450 . + . ID=Physo109643.2;Parent=Physo109643;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_191 ensembl protein_coding_gene 5615 6328 . + . ID=Physo144496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910002;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 5615 6328 . + . ID=Physo144496;Parent=Physo144496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 5615 6328 . + 0 ID=Physo144496;Parent=Physo144496;rank=1 scaffold_191 . exon 5615 6328 . + . ID=Physo144496.1;Parent=Physo144496;constitutive=1;rank=1 scaffold_191 ensembl protein_coding_gene 8616 9395 . + . ID=Physo144498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910004;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 8616 9395 . + . ID=Physo144498;Parent=Physo144498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 8616 8742 . + 0 ID=Physo144498;Parent=Physo144498;rank=1 scaffold_191 . exon 8616 8742 . + . ID=Physo144498.1;Parent=Physo144498;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_191 . CDS 8809 8914 . + 0 ID=Physo144498;Parent=Physo144498;rank=2 scaffold_191 . exon 8809 8914 . + . ID=Physo144498.2;Parent=Physo144498;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_191 . CDS 8986 9008 . + 0 ID=Physo144498;Parent=Physo144498;rank=3 scaffold_191 . exon 8986 9008 . + . ID=Physo144498.3;Parent=Physo144498;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_191 . CDS 9060 9067 . + 0 ID=Physo144498;Parent=Physo144498;rank=4 scaffold_191 . exon 9060 9082 . + . ID=Physo144498.4;Parent=Physo144498;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_191 . exon 9115 9144 . + . ID=Physo144498.5;Parent=Physo144498;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_191 . exon 9275 9395 . + . ID=Physo144498.6;Parent=Physo144498;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=6 scaffold_191 . repeat_region 17266 17290 . ? . description=dust scaffold_191 . repeat_region 19392 19408 . ? . description=dust scaffold_191 ensembl protein_coding_gene 13584 14264 . - . ID=Physo144499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910005;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 13584 14264 . - . ID=Physo144499;Parent=Physo144499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . exon 13584 13653 . - . ID=Physo144499.2;Parent=Physo144499;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_191 . exon 13747 14264 . - . ID=Physo144499.1;Parent=Physo144499;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_191 . CDS 13809 14264 . - 0 ID=Physo144499;Parent=Physo144499;rank=1 scaffold_191 ensembl protein_coding_gene 15146 17146 . + . ID=Physo144500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910006;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 15146 17146 . + . ID=Physo144500;Parent=Physo144500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 15146 17005 . + 0 ID=Physo144500;Parent=Physo144500;rank=1 scaffold_191 . exon 15146 17146 . + . ID=Physo144500.1;Parent=Physo144500;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_191 ensembl protein_coding_gene 17203 18206 . - . ID=Physo144501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910007;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 17203 18206 . - . ID=Physo144501;Parent=Physo144501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . exon 17203 18206 . - . ID=Physo144501.1;Parent=Physo144501;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_191 . CDS 17304 18146 . - 0 ID=Physo144501;Parent=Physo144501;rank=1 scaffold_191 . repeat_region 29518 44196 . ? . description=dust scaffold_191 ensembl protein_coding_gene 44563 45501 . - . ID=Physo125006;biotype=protein_coding;external_name=estExt_Genewise1.C_1910015;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 44563 45501 . - . ID=Physo125006;Parent=Physo125006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 44563 45402 . - 0 ID=Physo125006;Parent=Physo125006;rank=1 scaffold_191 . exon 44563 45501 . - . ID=Physo125006.1;Parent=Physo125006;constitutive=1;ensembl_phase=-1;rank=1 scaffold_191 ensembl protein_coding_gene 46792 48363 . - . ID=Physo144502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910008;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 46792 48363 . - . ID=Physo144502;Parent=Physo144502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 46792 48363 . - 0 ID=Physo144502;Parent=Physo144502;rank=1 scaffold_191 . exon 46792 48363 . - . ID=Physo144502.1;Parent=Physo144502;constitutive=1;rank=1 scaffold_191 . biological_region 50984 50984 0.999 + . logic_name=eponine scaffold_191 . repeat_region 51687 51712 . ? . description=dust scaffold_191 . biological_region 53207 53207 0.999 + . logic_name=eponine scaffold_191 . repeat_region 53840 53850 . ? . description=dust scaffold_191 . biological_region 56780 56780 0.999 + . logic_name=eponine scaffold_191 . biological_region 57011 57015 0.999 + . logic_name=eponine scaffold_191 . repeat_region 57459 57467 . ? . description=dust scaffold_191 . repeat_region 57754 57811 . ? . description=dust scaffold_191 . repeat_region 58361 58411 . ? . description=dust scaffold_191 . repeat_region 58942 58999 . ? . description=dust scaffold_191 ensembl tRNA_gene 57670 57742 . - . ID=EPrPSOG00000000005;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_191 ensembl transcript 57670 57742 . - . ID=EPrPSOT00000000005;Parent=EPrPSOG00000000005;biotype=tRNA;logic_name=ncrna_eg scaffold_191 ensembl tRNA_gene 58858 58930 . - . ID=EPrPSOG00000000224;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_191 ensembl transcript 58858 58930 . - . ID=EPrPSOT00000000224;Parent=EPrPSOG00000000224;biotype=tRNA;logic_name=ncrna_eg scaffold_191 ensembl tRNA_gene 58264 58336 . - . ID=EPrPSOG00000000246;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_191 ensembl transcript 58264 58336 . - . ID=EPrPSOT00000000246;Parent=EPrPSOG00000000246;biotype=tRNA;logic_name=ncrna_eg scaffold_191 . exon 57670 57742 . - . ID=EPrPSOE00000000005;Parent=EPrPSOT00000000005;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_191 . exon 58858 58930 . - . ID=EPrPSOE00000000224;Parent=EPrPSOT00000000224;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_191 . exon 58264 58336 . - . ID=EPrPSOE00000000246;Parent=EPrPSOT00000000246;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_191 ensembl protein_coding_gene 54758 55516 . - . ID=Physo109644;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1910003;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 54758 55516 . - . ID=Physo109644;Parent=Physo109644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 54758 55516 . - 0 ID=Physo109644;Parent=Physo109644;rank=1 scaffold_191 . exon 54758 55516 . - . ID=Physo109644.1;Parent=Physo109644;constitutive=1;rank=1 scaffold_191 ensembl protein_coding_gene 49310 50917 . - . ID=Physo144503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910009;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 49310 50917 . - . ID=Physo144503;Parent=Physo144503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 49310 50917 . - 0 ID=Physo144503;Parent=Physo144503;rank=1 scaffold_191 . exon 49310 50917 . - . ID=Physo144503.1;Parent=Physo144503;constitutive=1;rank=1 scaffold_191 ensembl protein_coding_gene 51837 53756 . - . ID=Physo144504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910010;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 51837 53756 . - . ID=Physo144504;Parent=Physo144504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 51837 53756 . - 0 ID=Physo144504;Parent=Physo144504;rank=1 scaffold_191 . exon 51837 53756 . - . ID=Physo144504.1;Parent=Physo144504;constitutive=1;rank=1 scaffold_191 ensembl protein_coding_gene 54162 54644 . + . ID=Physo144505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910011;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 54162 54644 . + . ID=Physo144505;Parent=Physo144505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 54162 54644 . + 0 ID=Physo144505;Parent=Physo144505;rank=1 scaffold_191 . exon 54162 54644 . + . ID=Physo144505.1;Parent=Physo144505;constitutive=1;rank=1 scaffold_191 ensembl protein_coding_gene 55772 57238 . - . ID=Physo144507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1910013;logic_name=jgi_physo1_1 scaffold_191 ensembl transcript 55772 57238 . - . ID=Physo144507;Parent=Physo144507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_191 . CDS 55772 57238 . - 0 ID=Physo144507;Parent=Physo144507;rank=1 scaffold_191 . exon 55772 57238 . - . ID=Physo144507.1;Parent=Physo144507;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_190 1 60791 scaffold_190 . biological_region 138 142 0.999 + . logic_name=eponine scaffold_190 . biological_region 564 568 0.999 - . logic_name=eponine scaffold_190 . biological_region 643 646 0.999 - . logic_name=eponine scaffold_190 . biological_region 3135 3137 0.999 + . logic_name=eponine scaffold_190 . biological_region 5021 5023 0.999 + . logic_name=eponine scaffold_190 . biological_region 5189 5189 0.999 - . logic_name=eponine scaffold_190 ensembl tRNA_gene 339 411 . - . ID=EPrPSOG00000000204;biotype=tRNA;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_190 ensembl transcript 339 411 . - . ID=EPrPSOT00000000204;Parent=EPrPSOG00000000204;biotype=tRNA;logic_name=ncrna_eg scaffold_190 ensembl tRNA_gene 266 337 . - . ID=EPrPSOG00000000294;biotype=tRNA;description=tRNA-His for anticodon GUG [Source:TRNASCAN_SE%3BAcc:tRNA-His];external_name=tRNA-His;logic_name=ncrna_eg scaffold_190 ensembl transcript 266 337 . - . ID=EPrPSOT00000000294;Parent=EPrPSOG00000000294;biotype=tRNA;logic_name=ncrna_eg scaffold_190 . exon 339 411 . - . ID=EPrPSOE00000000204;Parent=EPrPSOT00000000204;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_190 . exon 266 337 . - . ID=EPrPSOE00000000294;Parent=EPrPSOT00000000294;constitutive=1;rank=1 scaffold_190 ensembl protein_coding_gene 4632 5805 . - . ID=Physo144486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1900001;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 4632 5805 . - . ID=Physo144486;Parent=Physo144486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 4632 5378 . - 0 ID=Physo144486;Parent=Physo144486;rank=2 scaffold_190 . exon 4632 5378 . - . ID=Physo144486.2;Parent=Physo144486;constitutive=1;rank=2 scaffold_190 . CDS 5455 5805 . - 0 ID=Physo144486;Parent=Physo144486;rank=1 scaffold_190 . exon 5455 5805 . - . ID=Physo144486.1;Parent=Physo144486;constitutive=1;rank=1 scaffold_190 . repeat_region 9778 10058 . - . description=GypsyPi-1c_I-int scaffold_190 . repeat_region 10327 10335 . ? . description=dust scaffold_190 . repeat_region 10379 12676 . - . description=GypsyPi-1c_I-int scaffold_190 . repeat_region 14342 14437 . ? . description=dust scaffold_190 . repeat_region 15822 16102 . - . description=GypsyPi-1c_I-int scaffold_190 . repeat_region 16327 16412 . ? . description=dust scaffold_190 ensembl protein_coding_gene 9768 12684 . - . ID=Physo124977;biotype=protein_coding;external_name=estExt_Genewise1.C_1900003;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 9768 12684 . - . ID=Physo124977;Parent=Physo124977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 9768 10112 . - 0 ID=Physo124977;Parent=Physo124977;rank=3 scaffold_190 . exon 9768 10112 . - . ID=Physo124977.3;Parent=Physo124977;constitutive=1;rank=3 scaffold_190 . CDS 10354 11175 . - 0 ID=Physo124977;Parent=Physo124977;rank=2 scaffold_190 . exon 10354 11175 . - . ID=Physo124977.2;Parent=Physo124977;constitutive=1;rank=2 scaffold_190 . CDS 11254 12342 . - 0 ID=Physo124977;Parent=Physo124977;rank=1 scaffold_190 . exon 11254 12684 . - . ID=Physo124977.1;Parent=Physo124977;constitutive=1;ensembl_phase=-1;rank=1 scaffold_190 . biological_region 18675 18678 0.999 - . logic_name=eponine scaffold_190 . biological_region 20501 20501 0.999 + . logic_name=eponine scaffold_190 . biological_region 20537 20540 0.999 + . logic_name=eponine scaffold_190 . biological_region 20563 20568 0.999 - . logic_name=eponine scaffold_190 . biological_region 20995 20997 0.999 - . logic_name=eponine scaffold_190 . biological_region 24666 24668 0.999 - . logic_name=eponine scaffold_190 ensembl protein_coding_gene 17814 19267 . - . ID=Physo144488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1900003;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 17814 19267 . - . ID=Physo144488;Parent=Physo144488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 17814 17827 . - 0 ID=Physo144488;Parent=Physo144488;rank=2 scaffold_190 . exon 17814 17827 . - . ID=Physo144488.2;Parent=Physo144488;constitutive=1;ensembl_phase=1;rank=2 scaffold_190 . CDS 17890 19267 . - 0 ID=Physo144488;Parent=Physo144488;rank=1 scaffold_190 . exon 17890 19267 . - . ID=Physo144488.1;Parent=Physo144488;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_190 ensembl protein_coding_gene 23967 27205 . + . ID=Physo144489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1900004;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 23967 27205 . + . ID=Physo144489;Parent=Physo144489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 23967 26692 . + 0 ID=Physo144489;Parent=Physo144489;rank=1 scaffold_190 . exon 23967 26692 . + . ID=Physo144489.1;Parent=Physo144489;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_190 . CDS 26712 26879 . + 0 ID=Physo144489;Parent=Physo144489;rank=2 scaffold_190 . CDS 26944 27205 . + 0 ID=Physo144489;Parent=Physo144489;rank=3 scaffold_190 ensembl protein_coding_gene 28238 28825 . - . ID=Physo124982;biotype=protein_coding;external_name=estExt_Genewise1.C_1900008;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 28238 28825 . - . ID=Physo124982;Parent=Physo124982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 28238 28684 . - 0 ID=Physo124982;Parent=Physo124982;rank=1 scaffold_190 . exon 28238 28825 . - . ID=Physo124982.1;Parent=Physo124982;constitutive=1;ensembl_phase=-1;rank=1 scaffold_190 . exon 26712 26879 . + . ID=Physo144489.2;Parent=Physo144489;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_190 . exon 26944 27205 . + . ID=Physo144489.3;Parent=Physo144489;constitutive=1;ensembl_phase=2;rank=3 scaffold_190 ensembl protein_coding_gene 30173 31054 . - . ID=Physo144490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1900005;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 30173 31054 . - . ID=Physo144490;Parent=Physo144490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 30173 31054 . - 0 ID=Physo144490;Parent=Physo144490;rank=1 scaffold_190 . exon 30173 31054 . - . ID=Physo144490.1;Parent=Physo144490;constitutive=1;rank=1 scaffold_190 ensembl protein_coding_gene 33280 35540 . - . ID=Physo144491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1900006;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 33280 35540 . - . ID=Physo144491;Parent=Physo144491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 33280 33323 . - 0 ID=Physo144491;Parent=Physo144491;rank=3 scaffold_190 . exon 33280 33323 . - . ID=Physo144491.3;Parent=Physo144491;constitutive=1;ensembl_phase=1;rank=3 scaffold_190 . CDS 33491 34139 . - 0 ID=Physo144491;Parent=Physo144491;rank=2 scaffold_190 . exon 33491 34139 . - . ID=Physo144491.2;Parent=Physo144491;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_190 . CDS 34269 35540 . - 0 ID=Physo144491;Parent=Physo144491;rank=1 scaffold_190 . exon 34269 35540 . - . ID=Physo144491.1;Parent=Physo144491;constitutive=1;rank=1 scaffold_190 . biological_region 35065 35068 0.999 + . logic_name=eponine scaffold_190 . biological_region 35233 35234 0.999 + . logic_name=eponine scaffold_190 . repeat_region 39688 39697 . ? . description=dust scaffold_190 . repeat_region 40191 40198 . ? . description=dust scaffold_190 . biological_region 40714 40718 0.999 - . logic_name=eponine scaffold_190 . biological_region 40824 40826 0.999 - . logic_name=eponine scaffold_190 . repeat_region 41467 41474 . ? . description=dust scaffold_190 . repeat_region 42705 42729 . ? . description=trf scaffold_190 . repeat_region 42770 42777 . ? . description=dust scaffold_190 ensembl tRNA_gene 39780 39853 . + . ID=EPrPSOG00000000244;biotype=tRNA;description=tRNA-Lys for anticodon CUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_190 ensembl transcript 39780 39853 . + . ID=EPrPSOT00000000244;Parent=EPrPSOG00000000244;biotype=tRNA;logic_name=ncrna_eg scaffold_190 . exon 39780 39853 . + . ID=EPrPSOE00000000244;Parent=EPrPSOT00000000244;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_190 ensembl tRNA_gene 43920 43991 . + . ID=EPrPSOG00000000049;biotype=tRNA;description=tRNA-His for anticodon GUG [Source:TRNASCAN_SE%3BAcc:tRNA-His];external_name=tRNA-His;logic_name=ncrna_eg scaffold_190 ensembl transcript 43920 43991 . + . ID=EPrPSOT00000000049;Parent=EPrPSOG00000000049;biotype=tRNA;logic_name=ncrna_eg scaffold_190 . exon 43920 43991 . + . ID=EPrPSOE00000000049;Parent=EPrPSOT00000000049;constitutive=1;rank=1 scaffold_190 ensembl protein_coding_gene 47891 51077 . + . ID=Physo144492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1900007;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 47891 51077 . + . ID=Physo144492;Parent=Physo144492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 47891 49521 . + 0 ID=Physo144492;Parent=Physo144492;rank=1 scaffold_190 . exon 47891 49521 . + . ID=Physo144492.1;Parent=Physo144492;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_190 . CDS 49578 50112 . + 0 ID=Physo144492;Parent=Physo144492;rank=2 scaffold_190 . exon 49578 50112 . + . ID=Physo144492.2;Parent=Physo144492;constitutive=1;ensembl_phase=2;rank=2 scaffold_190 . CDS 50235 51077 . + 0 ID=Physo144492;Parent=Physo144492;rank=3 scaffold_190 . exon 50235 51077 . + . ID=Physo144492.3;Parent=Physo144492;constitutive=1;rank=3 scaffold_190 ensembl protein_coding_gene 52060 55636 . - . ID=Physo144493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1900008;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 52060 55636 . - . ID=Physo144493;Parent=Physo144493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 52060 52069 . - 0 ID=Physo144493;Parent=Physo144493;rank=8 scaffold_190 . exon 52060 52069 . - . ID=Physo144493.8;Parent=Physo144493;constitutive=1;ensembl_phase=2;rank=8 scaffold_190 . CDS 52156 52339 . - 0 ID=Physo144493;Parent=Physo144493;rank=7 scaffold_190 . CDS 52393 52529 . - 0 ID=Physo144493;Parent=Physo144493;rank=6 scaffold_190 . CDS 52724 53815 . - 0 ID=Physo144493;Parent=Physo144493;rank=5 scaffold_190 . CDS 53995 54248 . - 0 ID=Physo144493;Parent=Physo144493;rank=4 scaffold_190 . CDS 54332 54421 . - 0 ID=Physo144493;Parent=Physo144493;rank=3 scaffold_190 . CDS 54566 54712 . - 0 ID=Physo144493;Parent=Physo144493;rank=2 scaffold_190 . CDS 54824 55636 . - 0 ID=Physo144493;Parent=Physo144493;rank=1 scaffold_190 . repeat_region 57736 58188 . ? . description=dust scaffold_190 . biological_region 58392 58396 0.999 - . logic_name=eponine scaffold_190 . exon 52156 52339 . - . ID=Physo144493.7;Parent=Physo144493;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_190 . exon 52393 52529 . - . ID=Physo144493.6;Parent=Physo144493;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_190 . exon 52724 53815 . - . ID=Physo144493.5;Parent=Physo144493;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_190 . exon 53995 54248 . - . ID=Physo144493.4;Parent=Physo144493;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_190 . exon 54332 54421 . - . ID=Physo144493.3;Parent=Physo144493;constitutive=1;rank=3 scaffold_190 . exon 54566 54712 . - . ID=Physo144493.2;Parent=Physo144493;constitutive=1;rank=2 scaffold_190 . exon 54824 55636 . - . ID=Physo144493.1;Parent=Physo144493;constitutive=1;rank=1 scaffold_190 ensembl protein_coding_gene 58245 60040 . - . ID=Physo144494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1900009;logic_name=jgi_physo1_1 scaffold_190 ensembl transcript 58245 60040 . - . ID=Physo144494;Parent=Physo144494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_190 . CDS 58245 58724 . - 0 ID=Physo144494;Parent=Physo144494;rank=3 scaffold_190 . exon 58245 58724 . - . ID=Physo144494.3;Parent=Physo144494;constitutive=1;rank=3 scaffold_190 . CDS 58754 59220 . - 0 ID=Physo144494;Parent=Physo144494;rank=2 scaffold_190 . exon 58754 59220 . - . ID=Physo144494.2;Parent=Physo144494;constitutive=1;ensembl_phase=1;rank=2 scaffold_190 . CDS 59377 60040 . - 0 ID=Physo144494;Parent=Physo144494;rank=1 scaffold_190 . exon 59377 60040 . - . ID=Physo144494.1;Parent=Physo144494;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_189 1 64577 scaffold_189 . repeat_region 3074 3143 . ? . description=dust scaffold_189 . biological_region 3521 3525 0.999 + . logic_name=eponine scaffold_189 . biological_region 3584 3586 0.999 - . logic_name=eponine scaffold_189 . biological_region 3596 3597 0.999 + . logic_name=eponine scaffold_189 . biological_region 3623 3628 0.999 + . logic_name=eponine scaffold_189 . biological_region 3648 3653 0.999 - . logic_name=eponine scaffold_189 . biological_region 3659 3667 0.999 + . logic_name=eponine scaffold_189 . biological_region 3666 3667 0.999 - . logic_name=eponine scaffold_189 . repeat_region 3685 3735 . ? . description=dust scaffold_189 . biological_region 3688 3691 0.999 - . logic_name=eponine scaffold_189 . biological_region 3706 3707 0.999 + . logic_name=eponine scaffold_189 . biological_region 3710 3714 0.999 - . logic_name=eponine scaffold_189 . repeat_region 4553 4800 . ? . description=dust scaffold_189 . biological_region 5791 5796 0.999 - . logic_name=eponine scaffold_189 . repeat_region 6569 7127 . ? . description=dust scaffold_189 . repeat_region 7284 7318 . ? . description=trf scaffold_189 . biological_region 8166 8167 0.999 - . logic_name=eponine scaffold_189 . biological_region 9064 9070 0.999 - . logic_name=eponine scaffold_189 ensembl protein_coding_gene 7128 9587 . + . ID=Physo144467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890003;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 7128 9587 . + . ID=Physo144467;Parent=Physo144467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . exon 7128 9587 . + . ID=Physo144467.1;Parent=Physo144467;constitutive=1;ensembl_phase=-1;rank=1 scaffold_189 . CDS 7164 9587 . + 0 ID=Physo144467;Parent=Physo144467;rank=1 scaffold_189 ensembl protein_coding_gene 1 1178 . + . ID=Physo158967;biotype=protein_coding;external_name=C_scaffold_189000001;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 1 1178 . + . ID=Physo158967;Parent=Physo158967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 1 57 . + 0 ID=Physo158967;Parent=Physo158967;rank=1 scaffold_189 . exon 1 57 . + . ID=Physo158967.1;Parent=Physo158967;constitutive=1;rank=1 scaffold_189 . CDS 189 306 . + 0 ID=Physo158967;Parent=Physo158967;rank=2 scaffold_189 . exon 189 306 . + . ID=Physo158967.2;Parent=Physo158967;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_189 . CDS 460 651 . + 0 ID=Physo158967;Parent=Physo158967;rank=3 scaffold_189 . exon 460 651 . + . ID=Physo158967.3;Parent=Physo158967;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_189 . CDS 706 845 . + 0 ID=Physo158967;Parent=Physo158967;rank=4 scaffold_189 . exon 706 845 . + . ID=Physo158967.4;Parent=Physo158967;constitutive=1;ensembl_phase=1;rank=4 scaffold_189 . CDS 924 999 . + 0 ID=Physo158967;Parent=Physo158967;rank=5 scaffold_189 . exon 924 999 . + . ID=Physo158967.5;Parent=Physo158967;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_189 . CDS 1072 1178 . + 0 ID=Physo158967;Parent=Physo158967;rank=6 scaffold_189 . exon 1072 1178 . + . ID=Physo158967.6;Parent=Physo158967;constitutive=1;ensembl_phase=1;rank=6 scaffold_189 ensembl protein_coding_gene 1347 3740 . - . ID=Physo158968;biotype=protein_coding;external_name=C_scaffold_189000002;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 1347 3740 . - . ID=Physo158968;Parent=Physo158968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 1347 1517 . - 0 ID=Physo158968;Parent=Physo158968;rank=6 scaffold_189 . exon 1347 1517 . - . ID=Physo158968.6;Parent=Physo158968;constitutive=1;rank=6 scaffold_189 . CDS 1596 1925 . - 0 ID=Physo158968;Parent=Physo158968;rank=5 scaffold_189 . exon 1596 1925 . - . ID=Physo158968.5;Parent=Physo158968;constitutive=1;rank=5 scaffold_189 . CDS 1987 2181 . - 0 ID=Physo158968;Parent=Physo158968;rank=4 scaffold_189 . exon 1987 2181 . - . ID=Physo158968.4;Parent=Physo158968;constitutive=1;rank=4 scaffold_189 . CDS 2260 2418 . - 0 ID=Physo158968;Parent=Physo158968;rank=3 scaffold_189 . exon 2260 2418 . - . ID=Physo158968.3;Parent=Physo158968;constitutive=1;rank=3 scaffold_189 . CDS 2484 2592 . - 0 ID=Physo158968;Parent=Physo158968;rank=2 scaffold_189 . exon 2484 2592 . - . ID=Physo158968.2;Parent=Physo158968;constitutive=1;ensembl_phase=2;rank=2 scaffold_189 . CDS 2656 3740 . - 0 ID=Physo158968;Parent=Physo158968;rank=1 scaffold_189 . exon 2656 3740 . - . ID=Physo158968.1;Parent=Physo158968;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_189 ensembl protein_coding_gene 3957 5682 . + . ID=Physo158969;biotype=protein_coding;external_name=C_scaffold_189000003;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 3957 5682 . + . ID=Physo158969;Parent=Physo158969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 3957 4086 . + 0 ID=Physo158969;Parent=Physo158969;rank=1 scaffold_189 . exon 3957 4086 . + . ID=Physo158969.1;Parent=Physo158969;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_189 . CDS 4348 4492 . + 0 ID=Physo158969;Parent=Physo158969;rank=2 scaffold_189 . exon 4348 4492 . + . ID=Physo158969.2;Parent=Physo158969;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_189 . CDS 4835 5682 . + 0 ID=Physo158969;Parent=Physo158969;rank=3 scaffold_189 . exon 4835 5682 . + . ID=Physo158969.3;Parent=Physo158969;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_189 ensembl protein_coding_gene 14638 16167 . - . ID=Physo109639;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1890001;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 14638 16167 . - . ID=Physo109639;Parent=Physo109639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 14638 16167 . - 0 ID=Physo109639;Parent=Physo109639;rank=1 scaffold_189 . exon 14638 16167 . - . ID=Physo109639.1;Parent=Physo109639;constitutive=1;rank=1 scaffold_189 ensembl protein_coding_gene 9953 13380 . - . ID=Physo144468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890004;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 9953 13380 . - . ID=Physo144468;Parent=Physo144468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 9953 12416 . - 0 ID=Physo144468;Parent=Physo144468;rank=2 scaffold_189 . exon 9953 12416 . - . ID=Physo144468.2;Parent=Physo144468;constitutive=1;ensembl_phase=2;rank=2 scaffold_189 . CDS 12569 13380 . - 0 ID=Physo144468;Parent=Physo144468;rank=1 scaffold_189 . exon 12569 13380 . - . ID=Physo144468.1;Parent=Physo144468;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_189 ensembl protein_coding_gene 17744 18451 . + . ID=Physo144470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890006;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 17744 18451 . + . ID=Physo144470;Parent=Physo144470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 17744 18451 . + 0 ID=Physo144470;Parent=Physo144470;rank=1 scaffold_189 . exon 17744 18451 . + . ID=Physo144470.1;Parent=Physo144470;constitutive=1;rank=1 scaffold_189 . biological_region 20080 20083 0.999 + . logic_name=eponine scaffold_189 . repeat_region 21763 22003 . + . description=Polinton-1_PI scaffold_189 ensembl protein_coding_gene 25553 26983 . - . ID=Physo109640;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1890002;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 25553 26983 . - . ID=Physo109640;Parent=Physo109640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 25553 25709 . - 0 ID=Physo109640;Parent=Physo109640;rank=5 scaffold_189 . exon 25553 25709 . - . ID=Physo109640.5;Parent=Physo109640;constitutive=1;ensembl_phase=2;rank=5 scaffold_189 . CDS 25780 25943 . - 0 ID=Physo109640;Parent=Physo109640;rank=4 scaffold_189 . exon 25780 25943 . - . ID=Physo109640.4;Parent=Physo109640;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_189 . CDS 26018 26302 . - 0 ID=Physo109640;Parent=Physo109640;rank=3 scaffold_189 . exon 26018 26302 . - . ID=Physo109640.3;Parent=Physo109640;constitutive=1;rank=3 scaffold_189 . CDS 26369 26717 . - 0 ID=Physo109640;Parent=Physo109640;rank=2 scaffold_189 . exon 26369 26717 . - . ID=Physo109640.2;Parent=Physo109640;constitutive=1;ensembl_phase=2;rank=2 scaffold_189 . CDS 26778 26983 . - 0 ID=Physo109640;Parent=Physo109640;rank=1 scaffold_189 . exon 26778 26983 . - . ID=Physo109640.1;Parent=Physo109640;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_189 ensembl protein_coding_gene 19704 21635 . + . ID=Physo144471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890007;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 19704 21635 . + . ID=Physo144471;Parent=Physo144471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 19704 21635 . + 0 ID=Physo144471;Parent=Physo144471;rank=1 scaffold_189 . exon 19704 21635 . + . ID=Physo144471.1;Parent=Physo144471;constitutive=1;rank=1 scaffold_189 ensembl protein_coding_gene 23958 25400 . - . ID=Physo144472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890008;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 23958 25400 . - . ID=Physo144472;Parent=Physo144472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 23958 24114 . - 0 ID=Physo144472;Parent=Physo144472;rank=7 scaffold_189 . exon 23958 24114 . - . ID=Physo144472.7;Parent=Physo144472;constitutive=1;ensembl_phase=2;rank=7 scaffold_189 . CDS 24192 24355 . - 0 ID=Physo144472;Parent=Physo144472;rank=6 scaffold_189 . exon 24192 24355 . - . ID=Physo144472.6;Parent=Physo144472;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_189 . CDS 24501 24620 . - 0 ID=Physo144472;Parent=Physo144472;rank=5 scaffold_189 . exon 24501 24620 . - . ID=Physo144472.5;Parent=Physo144472;constitutive=1;rank=5 scaffold_189 . CDS 24700 24798 . - 0 ID=Physo144472;Parent=Physo144472;rank=4 scaffold_189 . exon 24700 24798 . - . ID=Physo144472.4;Parent=Physo144472;constitutive=1;rank=4 scaffold_189 . CDS 24865 24958 . - 0 ID=Physo144472;Parent=Physo144472;rank=3 scaffold_189 . exon 24865 24958 . - . ID=Physo144472.3;Parent=Physo144472;constitutive=1;ensembl_phase=2;rank=3 scaffold_189 . CDS 25021 25166 . - 0 ID=Physo144472;Parent=Physo144472;rank=2 scaffold_189 . exon 25021 25166 . - . ID=Physo144472.2;Parent=Physo144472;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_189 . CDS 25228 25353 . - 0 ID=Physo144472;Parent=Physo144472;rank=1 scaffold_189 . exon 25228 25400 . - . ID=Physo144472.1;Parent=Physo144472;constitutive=1;ensembl_phase=-1;rank=1 scaffold_189 ensembl protein_coding_gene 27402 29174 . - . ID=Physo144474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890010;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 27402 29174 . - . ID=Physo144474;Parent=Physo144474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 27402 27477 . - 0 ID=Physo144474;Parent=Physo144474;rank=4 scaffold_189 . exon 27402 27477 . - . ID=Physo144474.4;Parent=Physo144474;constitutive=1;ensembl_phase=2;rank=4 scaffold_189 . CDS 27572 28369 . - 0 ID=Physo144474;Parent=Physo144474;rank=3 scaffold_189 . exon 27572 28369 . - . ID=Physo144474.3;Parent=Physo144474;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_189 . CDS 28439 28748 . - 0 ID=Physo144474;Parent=Physo144474;rank=2 scaffold_189 . CDS 28820 29174 . - 0 ID=Physo144474;Parent=Physo144474;rank=1 scaffold_189 . repeat_region 28855 28896 . ? . description=dust scaffold_189 . repeat_region 28867 28902 . ? . description=trf scaffold_189 . exon 28439 28748 . - . ID=Physo144474.2;Parent=Physo144474;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_189 . exon 28820 29174 . - . ID=Physo144474.1;Parent=Physo144474;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_189 ensembl protein_coding_gene 29400 31155 . + . ID=Physo144475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890011;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 29400 31155 . + . ID=Physo144475;Parent=Physo144475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 29400 29494 . + 0 ID=Physo144475;Parent=Physo144475;rank=1 scaffold_189 . exon 29400 29494 . + . ID=Physo144475.1;Parent=Physo144475;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_189 . CDS 29566 29660 . + 0 ID=Physo144475;Parent=Physo144475;rank=2 scaffold_189 . exon 29566 29660 . + . ID=Physo144475.2;Parent=Physo144475;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_189 . CDS 29727 29802 . + 0 ID=Physo144475;Parent=Physo144475;rank=3 scaffold_189 . exon 29727 29802 . + . ID=Physo144475.3;Parent=Physo144475;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_189 . CDS 29877 30024 . + 0 ID=Physo144475;Parent=Physo144475;rank=4 scaffold_189 . exon 29877 30024 . + . ID=Physo144475.4;Parent=Physo144475;constitutive=1;ensembl_phase=2;rank=4 scaffold_189 . CDS 30084 30113 . + 0 ID=Physo144475;Parent=Physo144475;rank=5 scaffold_189 . exon 30084 30113 . + . ID=Physo144475.5;Parent=Physo144475;constitutive=1;rank=5 scaffold_189 . CDS 30190 30462 . + 0 ID=Physo144475;Parent=Physo144475;rank=6 scaffold_189 . exon 30190 30462 . + . ID=Physo144475.6;Parent=Physo144475;constitutive=1;rank=6 scaffold_189 . CDS 30536 30592 . + 0 ID=Physo144475;Parent=Physo144475;rank=7 scaffold_189 . exon 30536 30592 . + . ID=Physo144475.7;Parent=Physo144475;constitutive=1;rank=7 scaffold_189 . CDS 30654 30704 . + 0 ID=Physo144475;Parent=Physo144475;rank=8 scaffold_189 . exon 30654 30704 . + . ID=Physo144475.8;Parent=Physo144475;constitutive=1;rank=8 scaffold_189 . CDS 30770 30856 . + 0 ID=Physo144475;Parent=Physo144475;rank=9 scaffold_189 . exon 30770 30856 . + . ID=Physo144475.9;Parent=Physo144475;constitutive=1;rank=9 scaffold_189 . CDS 30928 31155 . + 0 ID=Physo144475;Parent=Physo144475;rank=10 scaffold_189 . exon 30928 31155 . + . ID=Physo144475.10;Parent=Physo144475;constitutive=1;rank=10 scaffold_189 ensembl protein_coding_gene 31528 33684 . - . ID=Physo144476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890012;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 31528 33684 . - . ID=Physo144476;Parent=Physo144476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 31528 33684 . - 0 ID=Physo144476;Parent=Physo144476;rank=1 scaffold_189 . exon 31528 33684 . - . ID=Physo144476.1;Parent=Physo144476;constitutive=1;rank=1 scaffold_189 ensembl protein_coding_gene 34440 36804 . + . ID=Physo144477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890013;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 34440 36804 . + . ID=Physo144477;Parent=Physo144477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 34440 34741 . + 0 ID=Physo144477;Parent=Physo144477;rank=1 scaffold_189 . exon 34440 34741 . + . ID=Physo144477.1;Parent=Physo144477;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_189 . CDS 34807 35291 . + 0 ID=Physo144477;Parent=Physo144477;rank=2 scaffold_189 . exon 34807 35291 . + . ID=Physo144477.2;Parent=Physo144477;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_189 . CDS 35358 35668 . + 0 ID=Physo144477;Parent=Physo144477;rank=3 scaffold_189 . exon 35358 35668 . + . ID=Physo144477.3;Parent=Physo144477;constitutive=1;ensembl_phase=1;rank=3 scaffold_189 . CDS 35750 36184 . + 0 ID=Physo144477;Parent=Physo144477;rank=4 scaffold_189 . exon 35750 36184 . + . ID=Physo144477.4;Parent=Physo144477;constitutive=1;rank=4 scaffold_189 . CDS 36258 36377 . + 0 ID=Physo144477;Parent=Physo144477;rank=5 scaffold_189 . exon 36258 36377 . + . ID=Physo144477.5;Parent=Physo144477;constitutive=1;rank=5 scaffold_189 . CDS 36454 36804 . + 0 ID=Physo144477;Parent=Physo144477;rank=6 scaffold_189 . exon 36454 36804 . + . ID=Physo144477.6;Parent=Physo144477;constitutive=1;rank=6 scaffold_189 . biological_region 37759 37764 0.999 + . logic_name=eponine scaffold_189 . biological_region 37816 37819 0.999 - . logic_name=eponine scaffold_189 . biological_region 39203 39206 0.999 + . logic_name=eponine scaffold_189 . biological_region 40501 40505 0.999 - . logic_name=eponine scaffold_189 . biological_region 40604 40606 0.999 + . logic_name=eponine scaffold_189 . biological_region 40620 40624 0.999 + . logic_name=eponine scaffold_189 . biological_region 41147 41151 0.999 + . logic_name=eponine scaffold_189 . biological_region 41858 41862 0.999 + . logic_name=eponine scaffold_189 . biological_region 42052 42055 0.999 + . logic_name=eponine scaffold_189 . biological_region 42175 42178 0.999 - . logic_name=eponine scaffold_189 . biological_region 43628 43631 0.999 - . logic_name=eponine scaffold_189 . biological_region 43734 43738 0.999 + . logic_name=eponine scaffold_189 . biological_region 43750 43753 0.999 + . logic_name=eponine scaffold_189 . biological_region 44014 44015 0.999 + . logic_name=eponine scaffold_189 . biological_region 44128 44132 0.999 + . logic_name=eponine scaffold_189 . biological_region 44270 44272 0.999 + . logic_name=eponine scaffold_189 . biological_region 44306 44306 0.999 + . logic_name=eponine scaffold_189 . biological_region 44646 44648 0.999 + . logic_name=eponine scaffold_189 . biological_region 45240 45243 0.999 - . logic_name=eponine scaffold_189 . biological_region 45381 45383 0.999 + . logic_name=eponine scaffold_189 ensembl protein_coding_gene 36976 38092 . - . ID=Physo109641;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1890003;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 36976 38092 . - . ID=Physo109641;Parent=Physo109641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 36976 37059 . - 0 ID=Physo109641;Parent=Physo109641;rank=4 scaffold_189 . exon 36976 37059 . - . ID=Physo109641.4;Parent=Physo109641;constitutive=1;rank=4 scaffold_189 . CDS 37139 37303 . - 0 ID=Physo109641;Parent=Physo109641;rank=3 scaffold_189 . exon 37139 37303 . - . ID=Physo109641.3;Parent=Physo109641;constitutive=1;rank=3 scaffold_189 . CDS 37377 37487 . - 0 ID=Physo109641;Parent=Physo109641;rank=2 scaffold_189 . exon 37377 37487 . - . ID=Physo109641.2;Parent=Physo109641;constitutive=1;rank=2 scaffold_189 . CDS 37560 38048 . - 0 ID=Physo109641;Parent=Physo109641;rank=1 scaffold_189 . exon 37560 38092 . - . ID=Physo109641.1;Parent=Physo109641;constitutive=1;ensembl_phase=-1;rank=1 scaffold_189 ensembl protein_coding_gene 38371 42156 . - . ID=Physo144479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890015;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 38371 42156 . - . ID=Physo144479;Parent=Physo144479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 38371 39364 . - 0 ID=Physo144479;Parent=Physo144479;rank=6 scaffold_189 . exon 38371 39364 . - . ID=Physo144479.6;Parent=Physo144479;constitutive=1;ensembl_phase=2;rank=6 scaffold_189 . CDS 39433 39882 . - 0 ID=Physo144479;Parent=Physo144479;rank=5 scaffold_189 . exon 39433 39882 . - . ID=Physo144479.5;Parent=Physo144479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_189 . CDS 40026 40898 . - 0 ID=Physo144479;Parent=Physo144479;rank=4 scaffold_189 . exon 40026 40898 . - . ID=Physo144479.4;Parent=Physo144479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_189 . CDS 41108 41732 . - 0 ID=Physo144479;Parent=Physo144479;rank=3 scaffold_189 . exon 41108 41732 . - . ID=Physo144479.3;Parent=Physo144479;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_189 . CDS 41816 41960 . - 0 ID=Physo144479;Parent=Physo144479;rank=2 scaffold_189 . exon 41816 41960 . - . ID=Physo144479.2;Parent=Physo144479;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_189 . CDS 42052 42156 . - 0 ID=Physo144479;Parent=Physo144479;rank=1 scaffold_189 . exon 42052 42156 . - . ID=Physo144479.1;Parent=Physo144479;constitutive=1;rank=1 scaffold_189 ensembl protein_coding_gene 44032 45243 . + . ID=Physo144480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890016;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 44032 45243 . + . ID=Physo144480;Parent=Physo144480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 44032 45243 . + 0 ID=Physo144480;Parent=Physo144480;rank=1 scaffold_189 . exon 44032 45243 . + . ID=Physo144480.1;Parent=Physo144480;constitutive=1;rank=1 scaffold_189 ensembl protein_coding_gene 45567 49745 . - . ID=Physo158974;biotype=protein_coding;external_name=C_scaffold_189000008;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 45567 49745 . - . ID=Physo158974;Parent=Physo158974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 45567 45902 . - 0 ID=Physo158974;Parent=Physo158974;rank=8 scaffold_189 . exon 45567 45902 . - . ID=Physo158974.8;Parent=Physo158974;constitutive=1;rank=8 scaffold_189 . CDS 45998 46050 . - 0 ID=Physo158974;Parent=Physo158974;rank=7 scaffold_189 . exon 45998 46050 . - . ID=Physo158974.7;Parent=Physo158974;constitutive=1;ensembl_phase=1;rank=7 scaffold_189 . CDS 46187 46339 . - 0 ID=Physo158974;Parent=Physo158974;rank=6 scaffold_189 . CDS 46437 46576 . - 0 ID=Physo158974;Parent=Physo158974;rank=5 scaffold_189 . CDS 46691 48642 . - 0 ID=Physo158974;Parent=Physo158974;rank=4 scaffold_189 . CDS 48717 48989 . - 0 ID=Physo158974;Parent=Physo158974;rank=3 scaffold_189 . CDS 49026 49374 . - 0 ID=Physo158974;Parent=Physo158974;rank=2 scaffold_189 . CDS 49444 49745 . - 0 ID=Physo158974;Parent=Physo158974;rank=1 scaffold_189 . repeat_region 50769 50794 . ? . description=trf scaffold_189 ensembl protein_coding_gene 49890 50967 . + . ID=Physo124971;biotype=protein_coding;external_name=estExt_Genewise1.C_1890031;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 49890 50967 . + . ID=Physo124971;Parent=Physo124971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . exon 49890 49923 . + . ID=Physo124971.1;Parent=Physo124971;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_189 . exon 50003 50136 . + . ID=Physo124971.2;Parent=Physo124971;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_189 . exon 50212 50373 . + . ID=Physo124971.3;Parent=Physo124971;constitutive=1;ensembl_phase=-1;rank=3 scaffold_189 . CDS 50215 50373 . + 0 ID=Physo124971;Parent=Physo124971;rank=1 scaffold_189 . CDS 50437 50483 . + 0 ID=Physo124971;Parent=Physo124971;rank=2 scaffold_189 . exon 50437 50483 . + . ID=Physo124971.4;Parent=Physo124971;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_189 . CDS 50562 50652 . + 0 ID=Physo124971;Parent=Physo124971;rank=3 scaffold_189 . exon 50562 50652 . + . ID=Physo124971.5;Parent=Physo124971;constitutive=1;ensembl_phase=2;rank=5 scaffold_189 . CDS 50721 50765 . + 0 ID=Physo124971;Parent=Physo124971;rank=4 scaffold_189 . exon 50721 50765 . + . ID=Physo124971.6;Parent=Physo124971;constitutive=1;rank=6 scaffold_189 . CDS 50836 50967 . + 0 ID=Physo124971;Parent=Physo124971;rank=5 scaffold_189 . exon 50836 50967 . + . ID=Physo124971.7;Parent=Physo124971;constitutive=1;rank=7 scaffold_189 ensembl protein_coding_gene 54530 56116 . - . ID=Physo144483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890019;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 54530 56116 . - . ID=Physo144483;Parent=Physo144483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 54530 56116 . - 0 ID=Physo144483;Parent=Physo144483;rank=1 scaffold_189 . exon 54530 56116 . - . ID=Physo144483.1;Parent=Physo144483;constitutive=1;rank=1 scaffold_189 . exon 46187 46339 . - . ID=Physo158974.6;Parent=Physo158974;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_189 . exon 46437 46576 . - . ID=Physo158974.5;Parent=Physo158974;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_189 . exon 46691 48642 . - . ID=Physo158974.4;Parent=Physo158974;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_189 . exon 48717 48989 . - . ID=Physo158974.3;Parent=Physo158974;constitutive=1;rank=3 scaffold_189 . exon 49026 49374 . - . ID=Physo158974.2;Parent=Physo158974;constitutive=1;ensembl_phase=2;rank=2 scaffold_189 . exon 49444 49745 . - . ID=Physo158974.1;Parent=Physo158974;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_189 . biological_region 56498 56502 0.999 + . logic_name=eponine scaffold_189 . biological_region 59436 59439 0.999 - . logic_name=eponine scaffold_189 . biological_region 59460 59465 0.999 - . logic_name=eponine scaffold_189 . biological_region 59952 59957 0.999 - . logic_name=eponine scaffold_189 . repeat_region 60439 60488 . ? . description=dust scaffold_189 . biological_region 60710 60710 0.999 + . logic_name=eponine scaffold_189 . biological_region 60832 60833 0.999 - . logic_name=eponine scaffold_189 . biological_region 60843 60847 0.999 - . logic_name=eponine scaffold_189 ensembl protein_coding_gene 57935 58867 . + . ID=Physo124973;biotype=protein_coding;external_name=estExt_Genewise1.C_1890033;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 57935 58867 . + . ID=Physo124973;Parent=Physo124973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . exon 57935 57976 . + . ID=Physo124973.1;Parent=Physo124973;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_189 . exon 58052 58387 . + . ID=Physo124973.2;Parent=Physo124973;constitutive=1;ensembl_phase=-1;rank=2 scaffold_189 . CDS 58088 58387 . + 0 ID=Physo124973;Parent=Physo124973;rank=1 scaffold_189 . CDS 58463 58867 . + 0 ID=Physo124973;Parent=Physo124973;rank=2 scaffold_189 . exon 58463 58867 . + . ID=Physo124973.3;Parent=Physo124973;constitutive=1;rank=3 scaffold_189 ensembl protein_coding_gene 60696 64197 . + . ID=Physo144485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1890021;logic_name=jgi_physo1_1 scaffold_189 ensembl transcript 60696 64197 . + . ID=Physo144485;Parent=Physo144485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_189 . CDS 60696 61022 . + 0 ID=Physo144485;Parent=Physo144485;rank=1 scaffold_189 . exon 60696 61022 . + . ID=Physo144485.1;Parent=Physo144485;constitutive=1;rank=1 scaffold_189 . CDS 61121 61197 . + 0 ID=Physo144485;Parent=Physo144485;rank=2 scaffold_189 . exon 61121 61197 . + . ID=Physo144485.2;Parent=Physo144485;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_189 . CDS 61341 61511 . + 0 ID=Physo144485;Parent=Physo144485;rank=3 scaffold_189 . exon 61341 61511 . + . ID=Physo144485.3;Parent=Physo144485;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_189 . CDS 61601 61704 . + 0 ID=Physo144485;Parent=Physo144485;rank=4 scaffold_189 . exon 61601 61704 . + . ID=Physo144485.4;Parent=Physo144485;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_189 . CDS 61771 61831 . + 0 ID=Physo144485;Parent=Physo144485;rank=5 scaffold_189 . exon 61771 61831 . + . ID=Physo144485.5;Parent=Physo144485;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_189 . CDS 61899 62028 . + 0 ID=Physo144485;Parent=Physo144485;rank=6 scaffold_189 . exon 61899 62028 . + . ID=Physo144485.6;Parent=Physo144485;constitutive=1;ensembl_phase=2;rank=6 scaffold_189 . CDS 62090 62189 . + 0 ID=Physo144485;Parent=Physo144485;rank=7 scaffold_189 . exon 62090 62189 . + . ID=Physo144485.7;Parent=Physo144485;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_189 . CDS 62267 62735 . + 0 ID=Physo144485;Parent=Physo144485;rank=8 scaffold_189 . exon 62267 62735 . + . ID=Physo144485.8;Parent=Physo144485;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_189 . CDS 62801 62860 . + 0 ID=Physo144485;Parent=Physo144485;rank=9 scaffold_189 . exon 62801 62860 . + . ID=Physo144485.9;Parent=Physo144485;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_189 . CDS 63065 63478 . + 0 ID=Physo144485;Parent=Physo144485;rank=10 scaffold_189 . exon 63065 63478 . + . ID=Physo144485.10;Parent=Physo144485;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_189 . CDS 63545 63583 . + 0 ID=Physo144485;Parent=Physo144485;rank=11 scaffold_189 . exon 63545 63583 . + . ID=Physo144485.11;Parent=Physo144485;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_189 . CDS 63665 63914 . + 0 ID=Physo144485;Parent=Physo144485;rank=12 scaffold_189 . exon 63665 63914 . + . ID=Physo144485.12;Parent=Physo144485;constitutive=1;ensembl_phase=2;rank=12 scaffold_189 . CDS 64003 64197 . + 0 ID=Physo144485;Parent=Physo144485;rank=13 scaffold_189 . exon 64003 64197 . + . ID=Physo144485.13;Parent=Physo144485;constitutive=1;rank=13 ##gff-version 3 ##sequence-region scaffold_188 1 66133 scaffold_188 ensembl protein_coding_gene 871 2209 . + . ID=Physo144447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880001;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 871 2209 . + . ID=Physo144447;Parent=Physo144447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 871 1116 . + 0 ID=Physo144447;Parent=Physo144447;rank=1 scaffold_188 . exon 871 1116 . + . ID=Physo144447.1;Parent=Physo144447;constitutive=1;rank=1 scaffold_188 . CDS 1195 1268 . + 0 ID=Physo144447;Parent=Physo144447;rank=2 scaffold_188 . exon 1195 1268 . + . ID=Physo144447.2;Parent=Physo144447;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_188 . CDS 1351 1539 . + 0 ID=Physo144447;Parent=Physo144447;rank=3 scaffold_188 . exon 1351 1539 . + . ID=Physo144447.3;Parent=Physo144447;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_188 . CDS 1792 2209 . + 0 ID=Physo144447;Parent=Physo144447;rank=4 scaffold_188 . exon 1792 2209 . + . ID=Physo144447.4;Parent=Physo144447;constitutive=1;ensembl_phase=2;rank=4 scaffold_188 ensembl protein_coding_gene 2304 3892 . - . ID=Physo144448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880002;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 2304 3892 . - . ID=Physo144448;Parent=Physo144448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 2304 2465 . - 0 ID=Physo144448;Parent=Physo144448;rank=3 scaffold_188 . exon 2304 2465 . - . ID=Physo144448.3;Parent=Physo144448;constitutive=1;rank=3 scaffold_188 . CDS 2532 2624 . - 0 ID=Physo144448;Parent=Physo144448;rank=2 scaffold_188 . exon 2532 2624 . - . ID=Physo144448.2;Parent=Physo144448;constitutive=1;rank=2 scaffold_188 . CDS 2702 3892 . - 0 ID=Physo144448;Parent=Physo144448;rank=1 scaffold_188 . exon 2702 3892 . - . ID=Physo144448.1;Parent=Physo144448;constitutive=1;rank=1 scaffold_188 ensembl protein_coding_gene 3949 4826 . - . ID=Physo144449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880003;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 3949 4826 . - . ID=Physo144449;Parent=Physo144449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . exon 3949 4278 . - . ID=Physo144449.4;Parent=Physo144449;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_188 . CDS 4108 4278 . - 0 ID=Physo144449;Parent=Physo144449;rank=4 scaffold_188 . CDS 4351 4506 . - 0 ID=Physo144449;Parent=Physo144449;rank=3 scaffold_188 . exon 4351 4506 . - . ID=Physo144449.3;Parent=Physo144449;constitutive=1;rank=3 scaffold_188 . CDS 4576 4671 . - 0 ID=Physo144449;Parent=Physo144449;rank=2 scaffold_188 . exon 4576 4671 . - . ID=Physo144449.2;Parent=Physo144449;constitutive=1;rank=2 scaffold_188 . CDS 4742 4762 . - 0 ID=Physo144449;Parent=Physo144449;rank=1 scaffold_188 . exon 4742 4826 . - . ID=Physo144449.1;Parent=Physo144449;constitutive=1;ensembl_phase=-1;rank=1 scaffold_188 ensembl protein_coding_gene 5085 6325 . + . ID=Physo144450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880004;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 5085 6325 . + . ID=Physo144450;Parent=Physo144450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 5085 6139 . + 0 ID=Physo144450;Parent=Physo144450;rank=1 scaffold_188 . exon 5085 6139 . + . ID=Physo144450.1;Parent=Physo144450;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_188 . CDS 6283 6325 . + 0 ID=Physo144450;Parent=Physo144450;rank=2 scaffold_188 . exon 6283 6325 . + . ID=Physo144450.2;Parent=Physo144450;constitutive=1;ensembl_phase=2;rank=2 scaffold_188 ensembl protein_coding_gene 8715 9490 . + . ID=Physo144451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880005;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 8715 9490 . + . ID=Physo144451;Parent=Physo144451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 8715 9288 . + 0 ID=Physo144451;Parent=Physo144451;rank=1 scaffold_188 . exon 8715 9288 . + . ID=Physo144451.1;Parent=Physo144451;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_188 . CDS 9486 9490 . + 0 ID=Physo144451;Parent=Physo144451;rank=2 scaffold_188 . repeat_region 14473 14496 . ? . description=trf scaffold_188 . repeat_region 14606 14627 . ? . description=trf scaffold_188 . biological_region 16775 16778 0.999 - . logic_name=eponine scaffold_188 . exon 9486 9490 . + . ID=Physo144451.2;Parent=Physo144451;constitutive=1;ensembl_phase=1;rank=2 scaffold_188 ensembl protein_coding_gene 10883 14861 . + . ID=Physo144452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880006;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 10883 14861 . + . ID=Physo144452;Parent=Physo144452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 10883 11521 . + 0 ID=Physo144452;Parent=Physo144452;rank=1 scaffold_188 . exon 10883 11521 . + . ID=Physo144452.1;Parent=Physo144452;constitutive=1;rank=1 scaffold_188 . CDS 11594 12513 . + 0 ID=Physo144452;Parent=Physo144452;rank=2 scaffold_188 . exon 11594 12513 . + . ID=Physo144452.2;Parent=Physo144452;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_188 . CDS 12584 12713 . + 0 ID=Physo144452;Parent=Physo144452;rank=3 scaffold_188 . exon 12584 12713 . + . ID=Physo144452.3;Parent=Physo144452;constitutive=1;ensembl_phase=2;rank=3 scaffold_188 . CDS 12792 14861 . + 0 ID=Physo144452;Parent=Physo144452;rank=4 scaffold_188 . exon 12792 14861 . + . ID=Physo144452.4;Parent=Physo144452;constitutive=1;rank=4 scaffold_188 ensembl protein_coding_gene 15035 17410 . + . ID=Physo144453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880007;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 15035 17410 . + . ID=Physo144453;Parent=Physo144453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 15035 17410 . + 0 ID=Physo144453;Parent=Physo144453;rank=1 scaffold_188 . exon 15035 17410 . + . ID=Physo144453.1;Parent=Physo144453;constitutive=1;rank=1 scaffold_188 ensembl protein_coding_gene 17482 18693 . - . ID=Physo144454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880008;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 17482 18693 . - . ID=Physo144454;Parent=Physo144454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 17482 18693 . - 0 ID=Physo144454;Parent=Physo144454;rank=1 scaffold_188 . exon 17482 18693 . - . ID=Physo144454.1;Parent=Physo144454;constitutive=1;rank=1 scaffold_188 . repeat_region 19808 19815 . ? . description=dust scaffold_188 ensembl protein_coding_gene 23125 24408 . + . ID=Physo144455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880009;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 23125 24408 . + . ID=Physo144455;Parent=Physo144455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 23125 23192 . + 0 ID=Physo144455;Parent=Physo144455;rank=1 scaffold_188 . exon 23125 23192 . + . ID=Physo144455.1;Parent=Physo144455;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_188 . CDS 23381 23409 . + 0 ID=Physo144455;Parent=Physo144455;rank=2 scaffold_188 . exon 23381 23409 . + . ID=Physo144455.2;Parent=Physo144455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_188 . CDS 23729 24408 . + 0 ID=Physo144455;Parent=Physo144455;rank=3 scaffold_188 . exon 23729 24408 . + . ID=Physo144455.3;Parent=Physo144455;constitutive=1;ensembl_phase=1;rank=3 scaffold_188 ensembl protein_coding_gene 27597 28071 . + . ID=Physo144456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880010;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 27597 28071 . + . ID=Physo144456;Parent=Physo144456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . exon 27597 27742 . + . ID=Physo144456.1;Parent=Physo144456;constitutive=1;ensembl_phase=-1;rank=1 scaffold_188 . CDS 27599 27742 . + 0 ID=Physo144456;Parent=Physo144456;rank=1 scaffold_188 . CDS 27832 28029 . + 0 ID=Physo144456;Parent=Physo144456;rank=2 scaffold_188 . exon 27832 28071 . + . ID=Physo144456.2;Parent=Physo144456;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_188 . biological_region 29654 29661 0.999 - . logic_name=eponine scaffold_188 . repeat_region 29760 29818 . ? . description=trf scaffold_188 . repeat_region 29766 29818 . ? . description=trf scaffold_188 . repeat_region 29832 29861 . ? . description=trf scaffold_188 . repeat_region 29835 29860 . ? . description=trf scaffold_188 . biological_region 32072 32076 0.999 - . logic_name=eponine scaffold_188 . biological_region 32455 32456 0.999 + . logic_name=eponine scaffold_188 . biological_region 32495 32498 0.999 - . logic_name=eponine scaffold_188 . biological_region 34513 34514 0.999 - . logic_name=eponine scaffold_188 . biological_region 34546 34552 0.999 - . logic_name=eponine scaffold_188 . biological_region 34568 34569 0.999 + . logic_name=eponine scaffold_188 . biological_region 34568 34574 0.999 - . logic_name=eponine scaffold_188 . biological_region 34585 34588 0.999 + . logic_name=eponine scaffold_188 . repeat_region 34608 34668 . ? . description=trf scaffold_188 . biological_region 34682 34684 0.999 - . logic_name=eponine scaffold_188 . biological_region 35042 35044 0.999 - . logic_name=eponine scaffold_188 . biological_region 35645 35646 0.999 + . logic_name=eponine scaffold_188 . biological_region 35755 35760 0.999 - . logic_name=eponine scaffold_188 . repeat_region 36258 36279 . ? . description=trf scaffold_188 . biological_region 36333 36338 0.999 + . logic_name=eponine scaffold_188 . biological_region 36355 36358 0.999 + . logic_name=eponine scaffold_188 ensembl protein_coding_gene 29549 34077 . + . ID=Physo144457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880011;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 29549 34077 . + . ID=Physo144457;Parent=Physo144457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 29549 33729 . + 0 ID=Physo144457;Parent=Physo144457;rank=1 scaffold_188 . exon 29549 33729 . + . ID=Physo144457.1;Parent=Physo144457;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_188 . CDS 33828 33849 . + 0 ID=Physo144457;Parent=Physo144457;rank=2 scaffold_188 . exon 33828 34077 . + . ID=Physo144457.2;Parent=Physo144457;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_188 ensembl protein_coding_gene 34447 36546 . + . ID=Physo144458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880012;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 34447 36546 . + . ID=Physo144458;Parent=Physo144458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 34447 36504 . + 0 ID=Physo144458;Parent=Physo144458;rank=1 scaffold_188 . exon 34447 36546 . + . ID=Physo144458.1;Parent=Physo144458;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_188 . repeat_region 45693 45752 . ? . description=dust scaffold_188 ensembl protein_coding_gene 37850 38770 . - . ID=Physo144459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880013;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 37850 38770 . - . ID=Physo144459;Parent=Physo144459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 37850 38770 . - 0 ID=Physo144459;Parent=Physo144459;rank=1 scaffold_188 . exon 37850 38770 . - . ID=Physo144459.1;Parent=Physo144459;constitutive=1;rank=1 scaffold_188 ensembl protein_coding_gene 40350 42540 . + . ID=Physo144460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880014;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 40350 42540 . + . ID=Physo144460;Parent=Physo144460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 40350 40749 . + 0 ID=Physo144460;Parent=Physo144460;rank=1 scaffold_188 . exon 40350 40749 . + . ID=Physo144460.1;Parent=Physo144460;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_188 . CDS 40820 42540 . + 0 ID=Physo144460;Parent=Physo144460;rank=2 scaffold_188 . exon 40820 42540 . + . ID=Physo144460.2;Parent=Physo144460;constitutive=1;ensembl_phase=1;rank=2 scaffold_188 ensembl protein_coding_gene 42627 46339 . - . ID=Physo158966;biotype=protein_coding;external_name=C_scaffold_188000005;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 42627 46339 . - . ID=Physo158966;Parent=Physo158966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 42627 42825 . - 0 ID=Physo158966;Parent=Physo158966;rank=6 scaffold_188 . exon 42627 42825 . - . ID=Physo158966.6;Parent=Physo158966;constitutive=1;ensembl_phase=2;rank=6 scaffold_188 . CDS 42847 43173 . - 0 ID=Physo158966;Parent=Physo158966;rank=5 scaffold_188 . exon 42847 43173 . - . ID=Physo158966.5;Parent=Physo158966;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_188 . CDS 43225 44262 . - 0 ID=Physo158966;Parent=Physo158966;rank=4 scaffold_188 . exon 43225 44262 . - . ID=Physo158966.4;Parent=Physo158966;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_188 . CDS 44370 44453 . - 0 ID=Physo158966;Parent=Physo158966;rank=3 scaffold_188 . exon 44370 44453 . - . ID=Physo158966.3;Parent=Physo158966;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_188 . CDS 44988 45760 . - 0 ID=Physo158966;Parent=Physo158966;rank=2 scaffold_188 . exon 44988 45760 . - . ID=Physo158966.2;Parent=Physo158966;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_188 . CDS 45830 46339 . - 0 ID=Physo158966;Parent=Physo158966;rank=1 scaffold_188 . exon 45830 46339 . - . ID=Physo158966.1;Parent=Physo158966;constitutive=1;rank=1 scaffold_188 . repeat_region 47572 47617 . ? . description=trf scaffold_188 . biological_region 48483 48486 0.999 + . logic_name=eponine scaffold_188 . biological_region 51878 51879 0.999 + . logic_name=eponine scaffold_188 . biological_region 53177 53179 0.999 + . logic_name=eponine scaffold_188 . biological_region 53214 53216 0.999 + . logic_name=eponine scaffold_188 . biological_region 53275 53282 0.999 - . logic_name=eponine scaffold_188 . biological_region 53302 53303 0.999 + . logic_name=eponine scaffold_188 . biological_region 54635 54644 0.999 + . logic_name=eponine scaffold_188 . biological_region 54694 54695 0.999 + . logic_name=eponine scaffold_188 . repeat_region 56508 56542 . ? . description=trf scaffold_188 ensembl protein_coding_gene 51011 56508 . - . ID=Physo144463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880017;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 51011 56508 . - . ID=Physo144463;Parent=Physo144463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 51011 51118 . - 0 ID=Physo144463;Parent=Physo144463;rank=4 scaffold_188 . exon 51011 51118 . - . ID=Physo144463.4;Parent=Physo144463;constitutive=1;rank=4 scaffold_188 . CDS 51262 54048 . - 0 ID=Physo144463;Parent=Physo144463;rank=3 scaffold_188 . exon 51262 54048 . - . ID=Physo144463.3;Parent=Physo144463;constitutive=1;rank=3 scaffold_188 . CDS 54120 55063 . - 0 ID=Physo144463;Parent=Physo144463;rank=2 scaffold_188 . exon 54120 55063 . - . ID=Physo144463.2;Parent=Physo144463;constitutive=1;ensembl_phase=1;rank=2 scaffold_188 . CDS 55224 56508 . - 0 ID=Physo144463;Parent=Physo144463;rank=1 scaffold_188 . exon 55224 56508 . - . ID=Physo144463.1;Parent=Physo144463;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_188 . repeat_region 57475 57482 . ? . description=dust scaffold_188 . repeat_region 57866 57873 . ? . description=dust scaffold_188 . repeat_region 58051 58061 . ? . description=dust scaffold_188 . repeat_region 64838 65013 . - . description=GypsyPi-1c_I-int scaffold_188 ensembl tRNA_gene 65932 66004 . + . ID=EPrPSOG00000000155;biotype=tRNA;description=tRNA-Phe for anticodon GAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_188 ensembl transcript 65932 66004 . + . ID=EPrPSOT00000000155;Parent=EPrPSOG00000000155;biotype=tRNA;logic_name=ncrna_eg scaffold_188 . exon 65932 66004 . + . ID=EPrPSOE00000000155;Parent=EPrPSOT00000000155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_188 ensembl protein_coding_gene 62354 63712 . + . ID=Physo144464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1880018;logic_name=jgi_physo1_1 scaffold_188 ensembl transcript 62354 63712 . + . ID=Physo144464;Parent=Physo144464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_188 . CDS 62354 63712 . + 0 ID=Physo144464;Parent=Physo144464;rank=1 scaffold_188 . exon 62354 63712 . + . ID=Physo144464.1;Parent=Physo144464;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_186 1 68977 scaffold_186 . repeat_region 218 226 . ? . description=dust scaffold_186 . biological_region 606 609 0.999 - . logic_name=eponine scaffold_186 . repeat_region 851 2974 . ? . description=dust scaffold_186 . biological_region 4840 4845 0.999 - . logic_name=eponine scaffold_186 . biological_region 6280 6281 0.999 - . logic_name=eponine scaffold_186 . repeat_region 7138 7147 . ? . description=dust scaffold_186 . biological_region 9808 9810 0.999 - . logic_name=eponine scaffold_186 ensembl protein_coding_gene 3479 4968 . + . ID=Physo144411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860001;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 3479 4968 . + . ID=Physo144411;Parent=Physo144411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . exon 3479 3909 . + . ID=Physo144411.1;Parent=Physo144411;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_186 . CDS 3488 3909 . + 0 ID=Physo144411;Parent=Physo144411;rank=1 scaffold_186 . CDS 4003 4045 . + 0 ID=Physo144411;Parent=Physo144411;rank=2 scaffold_186 . exon 4003 4045 . + . ID=Physo144411.2;Parent=Physo144411;constitutive=1;ensembl_phase=2;rank=2 scaffold_186 . CDS 4092 4871 . + 0 ID=Physo144411;Parent=Physo144411;rank=3 scaffold_186 . exon 4092 4968 . + . ID=Physo144411.3;Parent=Physo144411;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_186 ensembl protein_coding_gene 5350 6351 . - . ID=Physo144412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860002;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 5350 6351 . - . ID=Physo144412;Parent=Physo144412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 5350 6351 . - 0 ID=Physo144412;Parent=Physo144412;rank=1 scaffold_186 . exon 5350 6351 . - . ID=Physo144412.1;Parent=Physo144412;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 9371 10327 . + . ID=Physo144413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860003;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 9371 10327 . + . ID=Physo144413;Parent=Physo144413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 9371 10327 . + 0 ID=Physo144413;Parent=Physo144413;rank=1 scaffold_186 . exon 9371 10327 . + . ID=Physo144413.1;Parent=Physo144413;constitutive=1;rank=1 scaffold_186 . repeat_region 10187 10255 . ? . description=trf scaffold_186 . repeat_region 12185 12234 . ? . description=trf scaffold_186 . repeat_region 12320 12360 . ? . description=trf scaffold_186 . repeat_region 15497 15532 . ? . description=trf scaffold_186 . repeat_region 17531 17584 . ? . description=trf scaffold_186 ensembl protein_coding_gene 10799 11725 . + . ID=Physo144414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860004;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 10799 11725 . + . ID=Physo144414;Parent=Physo144414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 10799 11725 . + 0 ID=Physo144414;Parent=Physo144414;rank=1 scaffold_186 . exon 10799 11725 . + . ID=Physo144414.1;Parent=Physo144414;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 12113 13045 . - . ID=Physo144415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860005;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 12113 13045 . - . ID=Physo144415;Parent=Physo144415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 12113 13045 . - 0 ID=Physo144415;Parent=Physo144415;rank=1 scaffold_186 . exon 12113 13045 . - . ID=Physo144415.1;Parent=Physo144415;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 14137 14463 . - . ID=Physo144416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860006;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 14137 14463 . - . ID=Physo144416;Parent=Physo144416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 14137 14463 . - 0 ID=Physo144416;Parent=Physo144416;rank=1 scaffold_186 . exon 14137 14463 . - . ID=Physo144416.1;Parent=Physo144416;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 15799 16578 . - . ID=Physo144417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860007;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 15799 16578 . - . ID=Physo144417;Parent=Physo144417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 15799 16578 . - 0 ID=Physo144417;Parent=Physo144417;rank=1 scaffold_186 . exon 15799 16578 . - . ID=Physo144417.1;Parent=Physo144417;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 17164 18222 . - . ID=Physo144418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860008;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 17164 18222 . - . ID=Physo144418;Parent=Physo144418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 17164 18222 . - 0 ID=Physo144418;Parent=Physo144418;rank=1 scaffold_186 . exon 17164 18222 . - . ID=Physo144418.1;Parent=Physo144418;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 19192 19949 . + . ID=Physo144419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860009;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 19192 19949 . + . ID=Physo144419;Parent=Physo144419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 19192 19795 . + 0 ID=Physo144419;Parent=Physo144419;rank=1 scaffold_186 . exon 19192 19795 . + . ID=Physo144419.1;Parent=Physo144419;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_186 . CDS 19831 19949 . + 0 ID=Physo144419;Parent=Physo144419;rank=2 scaffold_186 . biological_region 21996 21998 0.999 - . logic_name=eponine scaffold_186 . biological_region 23182 23184 0.999 - . logic_name=eponine scaffold_186 . biological_region 23285 23286 0.999 - . logic_name=eponine scaffold_186 . biological_region 23392 23393 0.999 + . logic_name=eponine scaffold_186 . exon 19831 19949 . + . ID=Physo144419.2;Parent=Physo144419;constitutive=1;ensembl_phase=1;rank=2 scaffold_186 ensembl protein_coding_gene 21112 22171 . + . ID=Physo144420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860010;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 21112 22171 . + . ID=Physo144420;Parent=Physo144420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 21112 22125 . + 0 ID=Physo144420;Parent=Physo144420;rank=1 scaffold_186 . exon 21112 22171 . + . ID=Physo144420.1;Parent=Physo144420;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_186 ensembl protein_coding_gene 22745 23845 . + . ID=Physo144421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860011;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 22745 23845 . + . ID=Physo144421;Parent=Physo144421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 22745 23845 . + 0 ID=Physo144421;Parent=Physo144421;rank=1 scaffold_186 . exon 22745 23845 . + . ID=Physo144421.1;Parent=Physo144421;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 24423 25387 . + . ID=Physo144422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860012;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 24423 25387 . + . ID=Physo144422;Parent=Physo144422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 24423 25005 . + 0 ID=Physo144422;Parent=Physo144422;rank=1 scaffold_186 . exon 24423 25005 . + . ID=Physo144422.1;Parent=Physo144422;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_186 . CDS 25080 25387 . + 0 ID=Physo144422;Parent=Physo144422;rank=2 scaffold_186 . exon 25080 25387 . + . ID=Physo144422.2;Parent=Physo144422;constitutive=1;ensembl_phase=1;rank=2 scaffold_186 ensembl protein_coding_gene 25824 26834 . - . ID=Physo144423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860013;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 25824 26834 . - . ID=Physo144423;Parent=Physo144423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . exon 25824 26834 . - . ID=Physo144423.1;Parent=Physo144423;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_186 . CDS 25920 26834 . - 0 ID=Physo144423;Parent=Physo144423;rank=1 scaffold_186 ensembl protein_coding_gene 28972 29872 . - . ID=Physo158960;biotype=protein_coding;external_name=C_scaffold_186000002;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 28972 29872 . - . ID=Physo158960;Parent=Physo158960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 28972 29057 . - 0 ID=Physo158960;Parent=Physo158960;rank=2 scaffold_186 . exon 28972 29057 . - . ID=Physo158960.2;Parent=Physo158960;constitutive=1;ensembl_phase=1;rank=2 scaffold_186 . CDS 29263 29872 . - 0 ID=Physo158960;Parent=Physo158960;rank=1 scaffold_186 . exon 29263 29872 . - . ID=Physo158960.1;Parent=Physo158960;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_186 . repeat_region 30883 30903 . ? . description=trf scaffold_186 . repeat_region 30883 30909 . ? . description=dust scaffold_186 . repeat_region 31542 31555 . ? . description=dust scaffold_186 . repeat_region 31931 31973 . ? . description=trf scaffold_186 . repeat_region 31958 31986 . ? . description=trf scaffold_186 . repeat_region 32940 32985 . ? . description=trf scaffold_186 . repeat_region 33053 33063 . ? . description=dust scaffold_186 . repeat_region 37915 37922 . ? . description=dust scaffold_186 . repeat_region 38269 38292 . ? . description=trf scaffold_186 ensembl protein_coding_gene 31675 32607 . - . ID=Physo144425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860015;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 31675 32607 . - . ID=Physo144425;Parent=Physo144425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 31675 32607 . - 0 ID=Physo144425;Parent=Physo144425;rank=1 scaffold_186 . exon 31675 32607 . - . ID=Physo144425.1;Parent=Physo144425;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 36783 39858 . - . ID=Physo144426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860016;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 36783 39858 . - . ID=Physo144426;Parent=Physo144426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 36783 37559 . - 0 ID=Physo144426;Parent=Physo144426;rank=5 scaffold_186 . exon 36783 37559 . - . ID=Physo144426.5;Parent=Physo144426;constitutive=1;rank=5 scaffold_186 . CDS 37999 38435 . - 0 ID=Physo144426;Parent=Physo144426;rank=4 scaffold_186 . exon 37999 38435 . - . ID=Physo144426.4;Parent=Physo144426;constitutive=1;ensembl_phase=1;rank=4 scaffold_186 . CDS 38497 38927 . - 0 ID=Physo144426;Parent=Physo144426;rank=3 scaffold_186 . exon 38497 38927 . - . ID=Physo144426.3;Parent=Physo144426;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_186 . CDS 38996 39217 . - 0 ID=Physo144426;Parent=Physo144426;rank=2 scaffold_186 . exon 38996 39217 . - . ID=Physo144426.2;Parent=Physo144426;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_186 . CDS 39491 39858 . - 0 ID=Physo144426;Parent=Physo144426;rank=1 scaffold_186 . biological_region 40064 40066 0.999 + . logic_name=eponine scaffold_186 . biological_region 44143 44144 0.999 + . logic_name=eponine scaffold_186 . biological_region 46629 46634 0.999 - . logic_name=eponine scaffold_186 . exon 39491 39858 . - . ID=Physo144426.1;Parent=Physo144426;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_186 ensembl protein_coding_gene 43884 44942 . + . ID=Physo144427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860017;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 43884 44942 . + . ID=Physo144427;Parent=Physo144427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 43884 44942 . + 0 ID=Physo144427;Parent=Physo144427;rank=1 scaffold_186 . exon 43884 44942 . + . ID=Physo144427.1;Parent=Physo144427;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 47363 47896 . + . ID=Physo144428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860018;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 47363 47896 . + . ID=Physo144428;Parent=Physo144428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 47363 47425 . + 0 ID=Physo144428;Parent=Physo144428;rank=1 scaffold_186 . exon 47363 47425 . + . ID=Physo144428.1;Parent=Physo144428;constitutive=1;rank=1 scaffold_186 . CDS 47543 47896 . + 0 ID=Physo144428;Parent=Physo144428;rank=2 scaffold_186 . exon 47543 47896 . + . ID=Physo144428.2;Parent=Physo144428;constitutive=1;rank=2 scaffold_186 . repeat_region 49549 49557 . ? . description=dust scaffold_186 . repeat_region 49864 49879 . ? . description=dust scaffold_186 . repeat_region 51284 51390 . ? . description=trf scaffold_186 . repeat_region 51398 51533 . ? . description=trf scaffold_186 . repeat_region 52229 52236 . ? . description=dust scaffold_186 . repeat_region 52358 52373 . ? . description=dust scaffold_186 . repeat_region 54962 54971 . ? . description=dust scaffold_186 ensembl protein_coding_gene 50276 51655 . + . ID=Physo144429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860019;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 50276 51655 . + . ID=Physo144429;Parent=Physo144429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 50276 51655 . + 0 ID=Physo144429;Parent=Physo144429;rank=1 scaffold_186 . exon 50276 51655 . + . ID=Physo144429.1;Parent=Physo144429;constitutive=1;rank=1 scaffold_186 ensembl protein_coding_gene 53898 54551 . - . ID=Physo144430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860020;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 53898 54551 . - . ID=Physo144430;Parent=Physo144430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 53898 54088 . - 0 ID=Physo144430;Parent=Physo144430;rank=2 scaffold_186 . exon 53898 54088 . - . ID=Physo144430.2;Parent=Physo144430;constitutive=1;ensembl_phase=1;rank=2 scaffold_186 . CDS 54248 54551 . - 0 ID=Physo144430;Parent=Physo144430;rank=1 scaffold_186 . exon 54248 54551 . - . ID=Physo144430.1;Parent=Physo144430;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_186 ensembl protein_coding_gene 55234 55653 . + . ID=Physo144431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860021;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 55234 55653 . + . ID=Physo144431;Parent=Physo144431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 55234 55653 . + 0 ID=Physo144431;Parent=Physo144431;rank=1 scaffold_186 . exon 55234 55653 . + . ID=Physo144431.1;Parent=Physo144431;constitutive=1;rank=1 scaffold_186 . biological_region 61799 61803 0.999 + . logic_name=eponine scaffold_186 . biological_region 65446 65454 0.999 - . logic_name=eponine scaffold_186 . biological_region 66298 66300 0.999 + . logic_name=eponine scaffold_186 . biological_region 66367 66368 0.999 - . logic_name=eponine scaffold_186 ensembl protein_coding_gene 60141 64009 . + . ID=Physo144432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1860022;logic_name=jgi_physo1_1 scaffold_186 ensembl transcript 60141 64009 . + . ID=Physo144432;Parent=Physo144432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_186 . CDS 60141 60509 . + 0 ID=Physo144432;Parent=Physo144432;rank=1 scaffold_186 . exon 60141 60509 . + . ID=Physo144432.1;Parent=Physo144432;constitutive=1;rank=1 scaffold_186 . CDS 60653 60780 . + 0 ID=Physo144432;Parent=Physo144432;rank=2 scaffold_186 . exon 60653 60780 . + . ID=Physo144432.2;Parent=Physo144432;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_186 . CDS 60871 62842 . + 0 ID=Physo144432;Parent=Physo144432;rank=3 scaffold_186 . exon 60871 62842 . + . ID=Physo144432.3;Parent=Physo144432;constitutive=1;ensembl_phase=2;rank=3 scaffold_186 . CDS 63004 63272 . + 0 ID=Physo144432;Parent=Physo144432;rank=4 scaffold_186 . exon 63004 63272 . + . ID=Physo144432.4;Parent=Physo144432;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_186 . CDS 63316 64009 . + 0 ID=Physo144432;Parent=Physo144432;rank=5 scaffold_186 . exon 63316 64009 . + . ID=Physo144432.5;Parent=Physo144432;constitutive=1;ensembl_phase=2;rank=5 ##gff-version 3 ##sequence-region scaffold_168 1 69848 scaffold_168 . repeat_region 872 879 . ? . description=dust scaffold_168 . repeat_region 3545 3568 . ? . description=trf scaffold_168 . repeat_region 4345 4396 . ? . description=dust scaffold_168 . repeat_region 4349 4403 . ? . description=trf scaffold_168 . repeat_region 6653 6686 . ? . description=trf scaffold_168 . biological_region 6777 6779 0.999 - . logic_name=eponine scaffold_168 . repeat_region 8118 8126 . ? . description=dust scaffold_168 . repeat_region 8184 8281 . ? . description=trf scaffold_168 . repeat_region 9499 9570 . ? . description=trf scaffold_168 . biological_region 9564 9565 0.999 + . logic_name=eponine scaffold_168 . biological_region 9719 9721 0.999 - . logic_name=eponine scaffold_168 . repeat_region 9788 9830 . ? . description=dust scaffold_168 ensembl protein_coding_gene 2626 3111 . - . ID=Physo109611;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1680001;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 2626 3111 . - . ID=Physo109611;Parent=Physo109611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . CDS 2626 3111 . - 0 ID=Physo109611;Parent=Physo109611;rank=1 scaffold_168 . exon 2626 3111 . - . ID=Physo109611.1;Parent=Physo109611;constitutive=1;rank=1 scaffold_168 ensembl protein_coding_gene 3231 7629 . - . ID=Physo144126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1680002;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 3231 7629 . - . ID=Physo144126;Parent=Physo144126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . exon 3231 3296 . - . ID=Physo144126.9;Parent=Physo144126;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=9 scaffold_168 . CDS 3232 3296 . - 0 ID=Physo144126;Parent=Physo144126;rank=9 scaffold_168 . CDS 3340 3657 . - 0 ID=Physo144126;Parent=Physo144126;rank=8 scaffold_168 . exon 3340 3657 . - . ID=Physo144126.8;Parent=Physo144126;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_168 . CDS 3789 3942 . - 0 ID=Physo144126;Parent=Physo144126;rank=7 scaffold_168 . exon 3789 3942 . - . ID=Physo144126.7;Parent=Physo144126;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_168 . CDS 3992 4594 . - 0 ID=Physo144126;Parent=Physo144126;rank=6 scaffold_168 . exon 3992 4594 . - . ID=Physo144126.6;Parent=Physo144126;constitutive=1;rank=6 scaffold_168 . CDS 4769 5515 . - 0 ID=Physo144126;Parent=Physo144126;rank=5 scaffold_168 . exon 4769 5515 . - . ID=Physo144126.5;Parent=Physo144126;constitutive=1;rank=5 scaffold_168 . CDS 5541 5652 . - 0 ID=Physo144126;Parent=Physo144126;rank=4 scaffold_168 . exon 5541 5652 . - . ID=Physo144126.4;Parent=Physo144126;constitutive=1;ensembl_phase=2;rank=4 scaffold_168 . CDS 5796 7115 . - 0 ID=Physo144126;Parent=Physo144126;rank=3 scaffold_168 . exon 5796 7115 . - . ID=Physo144126.3;Parent=Physo144126;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_168 . CDS 7280 7320 . - 0 ID=Physo144126;Parent=Physo144126;rank=2 scaffold_168 . exon 7280 7320 . - . ID=Physo144126.2;Parent=Physo144126;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_168 . CDS 7591 7629 . - 0 ID=Physo144126;Parent=Physo144126;rank=1 scaffold_168 . exon 7591 7629 . - . ID=Physo144126.1;Parent=Physo144126;constitutive=1;rank=1 scaffold_168 ensembl protein_coding_gene 11544 12721 . - . ID=Physo144127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1680003;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 11544 12721 . - . ID=Physo144127;Parent=Physo144127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . CDS 11544 12605 . - 0 ID=Physo144127;Parent=Physo144127;rank=2 scaffold_168 . exon 11544 12605 . - . ID=Physo144127.2;Parent=Physo144127;constitutive=1;rank=2 scaffold_168 . CDS 12683 12721 . - 0 ID=Physo144127;Parent=Physo144127;rank=1 scaffold_168 . exon 12683 12721 . - . ID=Physo144127.1;Parent=Physo144127;constitutive=1;rank=1 scaffold_168 . repeat_region 13380 23283 . ? . description=dust scaffold_168 . repeat_region 23284 37656 . ? . description=dust scaffold_168 . repeat_region 38993 39028 . ? . description=trf scaffold_168 . repeat_region 39302 39346 . ? . description=trf scaffold_168 ensembl protein_coding_gene 38664 39160 . + . ID=Physo144128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1680004;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 38664 39160 . + . ID=Physo144128;Parent=Physo144128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . CDS 38664 38713 . + 0 ID=Physo144128;Parent=Physo144128;rank=1 scaffold_168 . exon 38664 38713 . + . ID=Physo144128.1;Parent=Physo144128;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_168 . CDS 38743 39160 . + 0 ID=Physo144128;Parent=Physo144128;rank=2 scaffold_168 . exon 38743 39160 . + . ID=Physo144128.2;Parent=Physo144128;constitutive=1;ensembl_phase=2;rank=2 scaffold_168 . biological_region 41829 41832 0.999 - . logic_name=eponine scaffold_168 . biological_region 41995 41999 0.999 + . logic_name=eponine scaffold_168 . biological_region 42050 42056 0.999 - . logic_name=eponine scaffold_168 . repeat_region 42740 42898 . ? . description=dust scaffold_168 . repeat_region 43337 43348 . ? . description=dust scaffold_168 . biological_region 47644 47646 0.999 - . logic_name=eponine scaffold_168 . biological_region 47698 47700 0.999 + . logic_name=eponine scaffold_168 ensembl protein_coding_gene 41605 43014 . + . ID=Physo109612;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1680002;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 41605 43014 . + . ID=Physo109612;Parent=Physo109612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . exon 41605 43014 . + . ID=Physo109612.1;Parent=Physo109612;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_168 . CDS 41637 42923 . + 0 ID=Physo109612;Parent=Physo109612;rank=1 scaffold_168 ensembl protein_coding_gene 49837 50761 . - . ID=Physo109613;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1680003;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 49837 50761 . - . ID=Physo109613;Parent=Physo109613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . CDS 49837 50091 . - 0 ID=Physo109613;Parent=Physo109613;rank=4 scaffold_168 . exon 49837 50091 . - . ID=Physo109613.4;Parent=Physo109613;constitutive=1;rank=4 scaffold_168 . CDS 50186 50262 . - 0 ID=Physo109613;Parent=Physo109613;rank=3 scaffold_168 . CDS 50287 50611 . - 0 ID=Physo109613;Parent=Physo109613;rank=2 scaffold_168 . CDS 50642 50752 . - 0 ID=Physo109613;Parent=Physo109613;rank=1 scaffold_168 ensembl protein_coding_gene 43021 43967 . - . ID=Physo144130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1680006;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 43021 43967 . - . ID=Physo144130;Parent=Physo144130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . exon 43021 43317 . - . ID=Physo144130.3;Parent=Physo144130;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_168 . CDS 43180 43317 . - 0 ID=Physo144130;Parent=Physo144130;rank=3 scaffold_168 . CDS 43420 43487 . - 0 ID=Physo144130;Parent=Physo144130;rank=2 scaffold_168 . exon 43420 43487 . - . ID=Physo144130.2;Parent=Physo144130;constitutive=1;ensembl_phase=1;rank=2 scaffold_168 . CDS 43559 43967 . - 0 ID=Physo144130;Parent=Physo144130;rank=1 scaffold_168 . exon 43559 43967 . - . ID=Physo144130.1;Parent=Physo144130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_168 ensembl protein_coding_gene 44717 49580 . + . ID=Physo144131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1680007;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 44717 49580 . + . ID=Physo144131;Parent=Physo144131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . CDS 44717 44906 . + 0 ID=Physo144131;Parent=Physo144131;rank=1 scaffold_168 . exon 44717 44906 . + . ID=Physo144131.1;Parent=Physo144131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_168 . CDS 44927 45327 . + 0 ID=Physo144131;Parent=Physo144131;rank=2 scaffold_168 . exon 44927 45327 . + . ID=Physo144131.2;Parent=Physo144131;constitutive=1;ensembl_phase=1;rank=2 scaffold_168 . CDS 45394 46000 . + 0 ID=Physo144131;Parent=Physo144131;rank=3 scaffold_168 . exon 45394 46000 . + . ID=Physo144131.3;Parent=Physo144131;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_168 . CDS 46040 46119 . + 0 ID=Physo144131;Parent=Physo144131;rank=4 scaffold_168 . exon 46040 46119 . + . ID=Physo144131.4;Parent=Physo144131;constitutive=1;ensembl_phase=1;rank=4 scaffold_168 . CDS 46149 46296 . + 0 ID=Physo144131;Parent=Physo144131;rank=5 scaffold_168 . exon 46149 46296 . + . ID=Physo144131.5;Parent=Physo144131;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_168 . CDS 46821 47372 . + 0 ID=Physo144131;Parent=Physo144131;rank=6 scaffold_168 . exon 46821 47372 . + . ID=Physo144131.6;Parent=Physo144131;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_168 . CDS 47502 47778 . + 0 ID=Physo144131;Parent=Physo144131;rank=7 scaffold_168 . exon 47502 47778 . + . ID=Physo144131.7;Parent=Physo144131;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_168 . CDS 47846 49580 . + 0 ID=Physo144131;Parent=Physo144131;rank=8 scaffold_168 . exon 47846 49580 . + . ID=Physo144131.8;Parent=Physo144131;constitutive=1;ensembl_phase=2;rank=8 scaffold_168 . repeat_region 52629 52682 . ? . description=trf scaffold_168 . repeat_region 55364 55387 . ? . description=trf scaffold_168 . repeat_region 56472 56495 . ? . description=trf scaffold_168 . repeat_region 57849 57868 . ? . description=trf scaffold_168 . exon 50186 50262 . - . ID=Physo109613.3;Parent=Physo109613;constitutive=1;ensembl_phase=1;rank=3 scaffold_168 . exon 50287 50611 . - . ID=Physo109613.2;Parent=Physo109613;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_168 . exon 50642 50761 . - . ID=Physo109613.1;Parent=Physo109613;constitutive=1;ensembl_phase=-1;rank=1 scaffold_168 ensembl protein_coding_gene 58627 62167 . - . ID=Physo144134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1680010;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 58627 62167 . - . ID=Physo144134;Parent=Physo144134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . CDS 58627 59191 . - 0 ID=Physo144134;Parent=Physo144134;rank=3 scaffold_168 . exon 58627 59191 . - . ID=Physo144134.3;Parent=Physo144134;constitutive=1;ensembl_phase=2;rank=3 scaffold_168 . CDS 59253 60440 . - 0 ID=Physo144134;Parent=Physo144134;rank=2 scaffold_168 . exon 59253 60440 . - . ID=Physo144134.2;Parent=Physo144134;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_168 . CDS 60639 62167 . - 0 ID=Physo144134;Parent=Physo144134;rank=1 scaffold_168 . biological_region 65855 65857 0.999 - . logic_name=eponine scaffold_168 . repeat_region 69047 69086 . ? . description=dust scaffold_168 . exon 60639 62167 . - . ID=Physo144134.1;Parent=Physo144134;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_168 ensembl protein_coding_gene 63972 65600 . - . ID=Physo144135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1680011;logic_name=jgi_physo1_1 scaffold_168 ensembl transcript 63972 65600 . - . ID=Physo144135;Parent=Physo144135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_168 . CDS 63972 65600 . - 0 ID=Physo144135;Parent=Physo144135;rank=1 scaffold_168 . exon 63972 65600 . - . ID=Physo144135.1;Parent=Physo144135;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_185 1 70174 scaffold_185 . repeat_region 1275 1282 . ? . description=dust scaffold_185 . repeat_region 5094 5102 . ? . description=dust scaffold_185 . repeat_region 8102 8166 . ? . description=trf scaffold_185 ensembl tRNA_gene 7522 7593 . - . ID=EPrPSOG00000000169;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_185 ensembl transcript 7522 7593 . - . ID=EPrPSOT00000000169;Parent=EPrPSOG00000000169;biotype=tRNA;logic_name=ncrna_eg scaffold_185 . exon 7522 7593 . - . ID=EPrPSOE00000000169;Parent=EPrPSOT00000000169;constitutive=1;rank=1 scaffold_185 ensembl protein_coding_gene 5723 7213 . + . ID=Physo144394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850001;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 5723 7213 . + . ID=Physo144394;Parent=Physo144394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 5723 7213 . + 0 ID=Physo144394;Parent=Physo144394;rank=1 scaffold_185 . exon 5723 7213 . + . ID=Physo144394.1;Parent=Physo144394;constitutive=1;rank=1 scaffold_185 . biological_region 9773 9778 0.999 + . logic_name=eponine scaffold_185 . biological_region 9842 9845 0.999 - . logic_name=eponine scaffold_185 . biological_region 9931 9936 0.999 - . logic_name=eponine scaffold_185 . biological_region 9970 9975 0.999 - . logic_name=eponine scaffold_185 . biological_region 10009 10010 0.999 - . logic_name=eponine scaffold_185 . biological_region 12292 12292 0.999 - . logic_name=eponine scaffold_185 . biological_region 14324 14325 0.999 - . logic_name=eponine scaffold_185 . biological_region 14933 14934 0.999 + . logic_name=eponine scaffold_185 . biological_region 15866 15869 0.999 + . logic_name=eponine scaffold_185 ensembl protein_coding_gene 9283 10077 . - . ID=Physo144395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850002;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 9283 10077 . - . ID=Physo144395;Parent=Physo144395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 9283 10077 . - 0 ID=Physo144395;Parent=Physo144395;rank=1 scaffold_185 . exon 9283 10077 . - . ID=Physo144395.1;Parent=Physo144395;constitutive=1;rank=1 scaffold_185 ensembl protein_coding_gene 10536 12797 . + . ID=Physo144396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850003;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 10536 12797 . + . ID=Physo144396;Parent=Physo144396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 10536 12797 . + 0 ID=Physo144396;Parent=Physo144396;rank=1 scaffold_185 . exon 10536 12797 . + . ID=Physo144396.1;Parent=Physo144396;constitutive=1;rank=1 scaffold_185 ensembl protein_coding_gene 13682 14263 . - . ID=Physo144397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850004;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 13682 14263 . - . ID=Physo144397;Parent=Physo144397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 13682 14263 . - 0 ID=Physo144397;Parent=Physo144397;rank=1 scaffold_185 . exon 13682 14263 . - . ID=Physo144397.1;Parent=Physo144397;constitutive=1;rank=1 scaffold_185 ensembl protein_coding_gene 14887 15567 . - . ID=Physo144398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850005;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 14887 15567 . - . ID=Physo144398;Parent=Physo144398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 14887 15567 . - 0 ID=Physo144398;Parent=Physo144398;rank=1 scaffold_185 . exon 14887 15567 . - . ID=Physo144398.1;Parent=Physo144398;constitutive=1;rank=1 scaffold_185 ensembl protein_coding_gene 16443 19940 . - . ID=Physo144399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850006;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 16443 19940 . - . ID=Physo144399;Parent=Physo144399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 16443 19940 . - 0 ID=Physo144399;Parent=Physo144399;rank=1 scaffold_185 . exon 16443 19940 . - . ID=Physo144399.1;Parent=Physo144399;constitutive=1;rank=1 scaffold_185 . repeat_region 19476 19560 . ? . description=dust scaffold_185 . repeat_region 21603 21614 . ? . description=dust scaffold_185 . repeat_region 23251 23258 . ? . description=dust scaffold_185 ensembl protein_coding_gene 22321 25569 . + . ID=Physo144400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850007;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 22321 25569 . + . ID=Physo144400;Parent=Physo144400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 22321 22605 . + 0 ID=Physo144400;Parent=Physo144400;rank=1 scaffold_185 . exon 22321 22605 . + . ID=Physo144400.1;Parent=Physo144400;constitutive=1;rank=1 scaffold_185 . CDS 22665 22940 . + 0 ID=Physo144400;Parent=Physo144400;rank=2 scaffold_185 . exon 22665 22940 . + . ID=Physo144400.2;Parent=Physo144400;constitutive=1;rank=2 scaffold_185 . CDS 23013 23224 . + 0 ID=Physo144400;Parent=Physo144400;rank=3 scaffold_185 . exon 23013 23224 . + . ID=Physo144400.3;Parent=Physo144400;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_185 . CDS 23289 23415 . + 0 ID=Physo144400;Parent=Physo144400;rank=4 scaffold_185 . exon 23289 23415 . + . ID=Physo144400.4;Parent=Physo144400;constitutive=1;ensembl_phase=2;rank=4 scaffold_185 . CDS 23479 24361 . + 0 ID=Physo144400;Parent=Physo144400;rank=5 scaffold_185 . exon 23479 24361 . + . ID=Physo144400.5;Parent=Physo144400;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_185 . CDS 24437 25569 . + 0 ID=Physo144400;Parent=Physo144400;rank=6 scaffold_185 . exon 24437 25569 . + . ID=Physo144400.6;Parent=Physo144400;constitutive=1;ensembl_phase=1;rank=6 scaffold_185 ensembl protein_coding_gene 25930 27002 . + . ID=Physo158958;biotype=protein_coding;external_name=C_scaffold_185000002;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 25930 27002 . + . ID=Physo158958;Parent=Physo158958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 25930 26116 . + 0 ID=Physo158958;Parent=Physo158958;rank=1 scaffold_185 . exon 25930 26116 . + . ID=Physo158958.1;Parent=Physo158958;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_185 . CDS 26200 26426 . + 0 ID=Physo158958;Parent=Physo158958;rank=2 scaffold_185 . exon 26200 26426 . + . ID=Physo158958.2;Parent=Physo158958;constitutive=1;ensembl_phase=1;rank=2 scaffold_185 . CDS 26448 26721 . + 0 ID=Physo158958;Parent=Physo158958;rank=3 scaffold_185 . CDS 26755 27002 . + 0 ID=Physo158958;Parent=Physo158958;rank=4 scaffold_185 . biological_region 26750 26756 0.999 + . logic_name=eponine scaffold_185 . repeat_region 26841 26921 . ? . description=trf scaffold_185 . repeat_region 28421 28920 . ? . description=trf scaffold_185 ensembl protein_coding_gene 33391 33989 . + . ID=Physo144402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850009;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 33391 33989 . + . ID=Physo144402;Parent=Physo144402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 33391 33549 . + 0 ID=Physo144402;Parent=Physo144402;rank=1 scaffold_185 . exon 33391 33549 . + . ID=Physo144402.1;Parent=Physo144402;constitutive=1;rank=1 scaffold_185 . CDS 33590 33662 . + 0 ID=Physo144402;Parent=Physo144402;rank=2 scaffold_185 . exon 33590 33662 . + . ID=Physo144402.2;Parent=Physo144402;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_185 . CDS 33713 33876 . + 0 ID=Physo144402;Parent=Physo144402;rank=3 scaffold_185 . exon 33713 33876 . + . ID=Physo144402.3;Parent=Physo144402;constitutive=1;ensembl_phase=1;rank=3 scaffold_185 . CDS 33942 33989 . + 0 ID=Physo144402;Parent=Physo144402;rank=4 scaffold_185 . exon 33942 33989 . + . ID=Physo144402.4;Parent=Physo144402;constitutive=1;rank=4 scaffold_185 ensembl protein_coding_gene 34621 35289 . - . ID=Physo144403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850010;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 34621 35289 . - . ID=Physo144403;Parent=Physo144403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 34621 35289 . - 0 ID=Physo144403;Parent=Physo144403;rank=1 scaffold_185 . exon 34621 35289 . - . ID=Physo144403.1;Parent=Physo144403;constitutive=1;rank=1 scaffold_185 . exon 26448 26721 . + . ID=Physo158958.3;Parent=Physo158958;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_185 . exon 26755 27002 . + . ID=Physo158958.4;Parent=Physo158958;constitutive=1;ensembl_phase=1;rank=4 scaffold_185 . repeat_region 42317 42351 . ? . description=dust scaffold_185 ensembl protein_coding_gene 38877 40049 . - . ID=Physo144404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850011;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 38877 40049 . - . ID=Physo144404;Parent=Physo144404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 38877 39346 . - 0 ID=Physo144404;Parent=Physo144404;rank=2 scaffold_185 . exon 38877 39346 . - . ID=Physo144404.2;Parent=Physo144404;constitutive=1;ensembl_phase=1;rank=2 scaffold_185 . CDS 39431 40049 . - 0 ID=Physo144404;Parent=Physo144404;rank=1 scaffold_185 . exon 39431 40049 . - . ID=Physo144404.1;Parent=Physo144404;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_185 ensembl protein_coding_gene 41985 42384 . - . ID=Physo144405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850012;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 41985 42384 . - . ID=Physo144405;Parent=Physo144405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 41985 42191 . - 0 ID=Physo144405;Parent=Physo144405;rank=2 scaffold_185 . exon 41985 42191 . - . ID=Physo144405.2;Parent=Physo144405;constitutive=1;rank=2 scaffold_185 . CDS 42247 42384 . - 0 ID=Physo144405;Parent=Physo144405;rank=1 scaffold_185 . exon 42247 42384 . - . ID=Physo144405.1;Parent=Physo144405;constitutive=1;rank=1 scaffold_185 . biological_region 50605 50608 0.999 + . logic_name=eponine scaffold_185 . biological_region 50710 50714 0.999 + . logic_name=eponine scaffold_185 . biological_region 50770 50770 0.999 + . logic_name=eponine scaffold_185 ensembl protein_coding_gene 45331 51528 . + . ID=Physo144406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850013;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 45331 51528 . + . ID=Physo144406;Parent=Physo144406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 45331 51528 . + 0 ID=Physo144406;Parent=Physo144406;rank=1 scaffold_185 . exon 45331 51528 . + . ID=Physo144406.1;Parent=Physo144406;constitutive=1;rank=1 scaffold_185 ensembl protein_coding_gene 51601 53967 . - . ID=Physo144407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850014;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 51601 53967 . - . ID=Physo144407;Parent=Physo144407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 51601 51945 . - 0 ID=Physo144407;Parent=Physo144407;rank=9 scaffold_185 . exon 51601 51945 . - . ID=Physo144407.9;Parent=Physo144407;constitutive=1;rank=9 scaffold_185 . CDS 52023 52058 . - 0 ID=Physo144407;Parent=Physo144407;rank=8 scaffold_185 . exon 52023 52058 . - . ID=Physo144407.8;Parent=Physo144407;constitutive=1;rank=8 scaffold_185 . CDS 52133 52313 . - 0 ID=Physo144407;Parent=Physo144407;rank=7 scaffold_185 . exon 52133 52313 . - . ID=Physo144407.7;Parent=Physo144407;constitutive=1;ensembl_phase=2;rank=7 scaffold_185 . CDS 52379 52440 . - 0 ID=Physo144407;Parent=Physo144407;rank=6 scaffold_185 . exon 52379 52440 . - . ID=Physo144407.6;Parent=Physo144407;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_185 . CDS 52514 52593 . - 0 ID=Physo144407;Parent=Physo144407;rank=5 scaffold_185 . exon 52514 52593 . - . ID=Physo144407.5;Parent=Physo144407;constitutive=1;ensembl_phase=1;rank=5 scaffold_185 . CDS 52663 52914 . - 0 ID=Physo144407;Parent=Physo144407;rank=4 scaffold_185 . CDS 53029 53091 . - 0 ID=Physo144407;Parent=Physo144407;rank=3 scaffold_185 . CDS 53173 53230 . - 0 ID=Physo144407;Parent=Physo144407;rank=2 scaffold_185 . CDS 53320 53967 . - 0 ID=Physo144407;Parent=Physo144407;rank=1 scaffold_185 . repeat_region 53386 53410 . ? . description=trf scaffold_185 . repeat_region 58807 58841 . ? . description=trf scaffold_185 . repeat_region 58807 58841 . ? . description=dust scaffold_185 ensembl protein_coding_gene 55954 56894 . - . ID=Physo109634;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1850001;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 55954 56894 . - . ID=Physo109634;Parent=Physo109634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 55954 56706 . - 0 ID=Physo109634;Parent=Physo109634;rank=2 scaffold_185 . exon 55954 56706 . - . ID=Physo109634.2;Parent=Physo109634;constitutive=1;rank=2 scaffold_185 . CDS 56733 56894 . - 0 ID=Physo109634;Parent=Physo109634;rank=1 scaffold_185 . exon 56733 56894 . - . ID=Physo109634.1;Parent=Physo109634;constitutive=1;rank=1 scaffold_185 . exon 52663 52914 . - . ID=Physo144407.4;Parent=Physo144407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_185 . exon 53029 53091 . - . ID=Physo144407.3;Parent=Physo144407;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_185 . exon 53173 53230 . - . ID=Physo144407.2;Parent=Physo144407;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_185 . exon 53320 53967 . - . ID=Physo144407.1;Parent=Physo144407;constitutive=1;rank=1 scaffold_185 ensembl protein_coding_gene 59343 68087 . + . ID=Physo144409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850016;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 59343 68087 . + . ID=Physo144409;Parent=Physo144409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 59343 59502 . + 0 ID=Physo144409;Parent=Physo144409;rank=1 scaffold_185 . exon 59343 59502 . + . ID=Physo144409.1;Parent=Physo144409;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_185 . CDS 59537 59547 . + 0 ID=Physo144409;Parent=Physo144409;rank=2 scaffold_185 . exon 59537 59547 . + . ID=Physo144409.2;Parent=Physo144409;constitutive=1;ensembl_phase=1;rank=2 scaffold_185 . CDS 60074 60181 . + 0 ID=Physo144409;Parent=Physo144409;rank=3 scaffold_185 . exon 60074 60181 . + . ID=Physo144409.3;Parent=Physo144409;constitutive=1;rank=3 scaffold_185 . CDS 60280 60406 . + 0 ID=Physo144409;Parent=Physo144409;rank=4 scaffold_185 . exon 60280 60406 . + . ID=Physo144409.4;Parent=Physo144409;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_185 . CDS 60776 60856 . + 0 ID=Physo144409;Parent=Physo144409;rank=5 scaffold_185 . exon 60776 60856 . + . ID=Physo144409.5;Parent=Physo144409;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_185 . CDS 60894 61378 . + 0 ID=Physo144409;Parent=Physo144409;rank=6 scaffold_185 . exon 60894 61378 . + . ID=Physo144409.6;Parent=Physo144409;constitutive=1;ensembl_phase=1;rank=6 scaffold_185 . CDS 61527 61887 . + 0 ID=Physo144409;Parent=Physo144409;rank=7 scaffold_185 . CDS 62022 62353 . + 0 ID=Physo144409;Parent=Physo144409;rank=8 scaffold_185 . CDS 62383 63384 . + 0 ID=Physo144409;Parent=Physo144409;rank=9 scaffold_185 . CDS 63411 64733 . + 0 ID=Physo144409;Parent=Physo144409;rank=10 scaffold_185 . CDS 64989 65130 . + 0 ID=Physo144409;Parent=Physo144409;rank=11 scaffold_185 . CDS 65189 65326 . + 0 ID=Physo144409;Parent=Physo144409;rank=12 scaffold_185 . CDS 65393 65571 . + 0 ID=Physo144409;Parent=Physo144409;rank=13 scaffold_185 . CDS 65597 65965 . + 0 ID=Physo144409;Parent=Physo144409;rank=14 scaffold_185 . CDS 66635 67017 . + 0 ID=Physo144409;Parent=Physo144409;rank=15 scaffold_185 . CDS 67084 67382 . + 0 ID=Physo144409;Parent=Physo144409;rank=16 scaffold_185 . CDS 67574 67598 . + 0 ID=Physo144409;Parent=Physo144409;rank=17 scaffold_185 . CDS 67772 68087 . + 0 ID=Physo144409;Parent=Physo144409;rank=18 scaffold_185 . biological_region 61569 61572 0.999 + . logic_name=eponine scaffold_185 . biological_region 61941 61944 0.999 + . logic_name=eponine scaffold_185 . biological_region 61995 61995 0.999 + . logic_name=eponine scaffold_185 . biological_region 63436 63440 0.999 - . logic_name=eponine scaffold_185 . biological_region 63437 63442 0.999 + . logic_name=eponine scaffold_185 . biological_region 63464 63471 0.999 - . logic_name=eponine scaffold_185 . biological_region 64143 64147 0.999 - . logic_name=eponine scaffold_185 . biological_region 66821 66823 0.999 + . logic_name=eponine scaffold_185 . biological_region 66935 66942 0.999 - . logic_name=eponine scaffold_185 . biological_region 66940 66940 0.999 + . logic_name=eponine scaffold_185 . biological_region 67487 67491 0.999 + . logic_name=eponine scaffold_185 . repeat_region 68104 68382 . - . description=GypsyPi-1c_I-int scaffold_185 . repeat_region 68649 70163 . - . description=GypsyPi-1c_I-int scaffold_185 . biological_region 69242 69245 0.999 - . logic_name=eponine scaffold_185 . biological_region 69698 69702 0.999 - . logic_name=eponine scaffold_185 . exon 61527 61887 . + . ID=Physo144409.7;Parent=Physo144409;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_185 . exon 62022 62353 . + . ID=Physo144409.8;Parent=Physo144409;constitutive=1;ensembl_phase=1;rank=8 scaffold_185 . exon 62383 63384 . + . ID=Physo144409.9;Parent=Physo144409;constitutive=1;rank=9 scaffold_185 . exon 63411 64733 . + . ID=Physo144409.10;Parent=Physo144409;constitutive=1;rank=10 scaffold_185 . exon 64989 65130 . + . ID=Physo144409.11;Parent=Physo144409;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_185 . exon 65189 65326 . + . ID=Physo144409.12;Parent=Physo144409;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_185 . exon 65393 65571 . + . ID=Physo144409.13;Parent=Physo144409;constitutive=1;ensembl_phase=1;rank=13 scaffold_185 . exon 65597 65965 . + . ID=Physo144409.14;Parent=Physo144409;constitutive=1;rank=14 scaffold_185 . exon 66635 67017 . + . ID=Physo144409.15;Parent=Physo144409;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_185 . exon 67084 67382 . + . ID=Physo144409.16;Parent=Physo144409;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=16 scaffold_185 . exon 67574 67598 . + . ID=Physo144409.17;Parent=Physo144409;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=17 scaffold_185 . exon 67772 68087 . + . ID=Physo144409.18;Parent=Physo144409;constitutive=1;ensembl_phase=2;rank=18 scaffold_185 ensembl protein_coding_gene 68340 70154 . - . ID=Physo144410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1850017;logic_name=jgi_physo1_1 scaffold_185 ensembl transcript 68340 70154 . - . ID=Physo144410;Parent=Physo144410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_185 . CDS 68340 68346 . - 0 ID=Physo144410;Parent=Physo144410;rank=3 scaffold_185 . exon 68340 68346 . - . ID=Physo144410.3;Parent=Physo144410;constitutive=1;ensembl_phase=2;rank=3 scaffold_185 . CDS 68387 69606 . - 0 ID=Physo144410;Parent=Physo144410;rank=2 scaffold_185 . exon 68387 69606 . - . ID=Physo144410.2;Parent=Physo144410;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_185 . CDS 69888 70154 . - 0 ID=Physo144410;Parent=Physo144410;rank=1 scaffold_185 . exon 69888 70154 . - . ID=Physo144410.1;Parent=Physo144410;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_183 1 77750 scaffold_183 . biological_region 2241 2241 0.999 - . logic_name=eponine scaffold_183 . repeat_region 2758 2767 . ? . description=dust scaffold_183 . biological_region 4065 4066 0.999 - . logic_name=eponine scaffold_183 . biological_region 4163 4166 0.999 - . logic_name=eponine scaffold_183 . biological_region 4373 4375 0.999 + . logic_name=eponine scaffold_183 . biological_region 4464 4470 0.999 + . logic_name=eponine scaffold_183 . biological_region 4554 4559 0.999 + . logic_name=eponine scaffold_183 . biological_region 4591 4592 0.999 - . logic_name=eponine scaffold_183 . biological_region 6522 6524 0.999 - . logic_name=eponine scaffold_183 . repeat_region 8084 8100 . ? . description=dust scaffold_183 ensembl protein_coding_gene 736 1784 . + . ID=Physo144374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830001;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 736 1784 . + . ID=Physo144374;Parent=Physo144374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 736 1632 . + 0 ID=Physo144374;Parent=Physo144374;rank=1 scaffold_183 . exon 736 1632 . + . ID=Physo144374.1;Parent=Physo144374;constitutive=1;rank=1 scaffold_183 . CDS 1677 1784 . + 0 ID=Physo144374;Parent=Physo144374;rank=2 scaffold_183 . exon 1677 1784 . + . ID=Physo144374.2;Parent=Physo144374;constitutive=1;rank=2 scaffold_183 ensembl protein_coding_gene 3328 4435 . - . ID=Physo144375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830002;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 3328 4435 . - . ID=Physo144375;Parent=Physo144375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 3328 4317 . - 0 ID=Physo144375;Parent=Physo144375;rank=1 scaffold_183 . exon 3328 4435 . - . ID=Physo144375.1;Parent=Physo144375;constitutive=1;ensembl_phase=-1;rank=1 scaffold_183 . repeat_region 15483 15524 . ? . description=trf scaffold_183 . repeat_region 15623 15671 . ? . description=trf scaffold_183 . biological_region 20609 20609 0.999 + . logic_name=eponine scaffold_183 . biological_region 20654 20657 0.999 + . logic_name=eponine scaffold_183 . biological_region 20741 20744 0.999 + . logic_name=eponine scaffold_183 . repeat_region 21170 21180 . ? . description=dust scaffold_183 . repeat_region 25763 25778 . ? . description=dust scaffold_183 . repeat_region 26587 26596 . ? . description=dust scaffold_183 ensembl protein_coding_gene 27745 28773 . - . ID=Physo144376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830003;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 27745 28773 . - . ID=Physo144376;Parent=Physo144376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 27745 28773 . - 0 ID=Physo144376;Parent=Physo144376;rank=1 scaffold_183 . exon 27745 28773 . - . ID=Physo144376.1;Parent=Physo144376;constitutive=1;rank=1 scaffold_183 . repeat_region 33587 33618 . ? . description=trf scaffold_183 . repeat_region 36674 36705 . ? . description=trf scaffold_183 ensembl protein_coding_gene 32695 33238 . + . ID=Physo124875;biotype=protein_coding;external_name=estExt_Genewise1.C_1830005;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 32695 33238 . + . ID=Physo124875;Parent=Physo124875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . exon 32695 33130 . + . ID=Physo124875.1;Parent=Physo124875;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_183 . CDS 32947 33130 . + 0 ID=Physo124875;Parent=Physo124875;rank=1 scaffold_183 . CDS 33201 33238 . + 0 ID=Physo124875;Parent=Physo124875;rank=2 scaffold_183 . exon 33201 33238 . + . ID=Physo124875.2;Parent=Physo124875;constitutive=1;ensembl_phase=1;rank=2 scaffold_183 ensembl protein_coding_gene 34608 35638 . + . ID=Physo144377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830004;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 34608 35638 . + . ID=Physo144377;Parent=Physo144377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 34608 35320 . + 0 ID=Physo144377;Parent=Physo144377;rank=1 scaffold_183 . exon 34608 35320 . + . ID=Physo144377.1;Parent=Physo144377;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_183 . CDS 35431 35638 . + 0 ID=Physo144377;Parent=Physo144377;rank=2 scaffold_183 . exon 35431 35638 . + . ID=Physo144377.2;Parent=Physo144377;constitutive=1;ensembl_phase=2;rank=2 scaffold_183 ensembl protein_coding_gene 37858 38502 . + . ID=Physo144378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830005;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 37858 38502 . + . ID=Physo144378;Parent=Physo144378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 37858 38502 . + 0 ID=Physo144378;Parent=Physo144378;rank=1 scaffold_183 . exon 37858 38502 . + . ID=Physo144378.1;Parent=Physo144378;constitutive=1;rank=1 scaffold_183 . biological_region 47913 47915 0.999 + . logic_name=eponine scaffold_183 ensembl protein_coding_gene 42949 43494 . - . ID=Physo144379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830006;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 42949 43494 . - . ID=Physo144379;Parent=Physo144379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 42949 43494 . - 0 ID=Physo144379;Parent=Physo144379;rank=1 scaffold_183 . exon 42949 43494 . - . ID=Physo144379.1;Parent=Physo144379;constitutive=1;rank=1 scaffold_183 ensembl protein_coding_gene 45952 46464 . - . ID=Physo144380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830007;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 45952 46464 . - . ID=Physo144380;Parent=Physo144380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 45952 46464 . - 0 ID=Physo144380;Parent=Physo144380;rank=1 scaffold_183 . exon 45952 46464 . - . ID=Physo144380.1;Parent=Physo144380;constitutive=1;rank=1 scaffold_183 ensembl protein_coding_gene 47742 48495 . + . ID=Physo144381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830008;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 47742 48495 . + . ID=Physo144381;Parent=Physo144381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 47742 47996 . + 0 ID=Physo144381;Parent=Physo144381;rank=1 scaffold_183 . exon 47742 47996 . + . ID=Physo144381.1;Parent=Physo144381;constitutive=1;rank=1 scaffold_183 . CDS 48082 48372 . + 0 ID=Physo144381;Parent=Physo144381;rank=2 scaffold_183 . exon 48082 48495 . + . ID=Physo144381.2;Parent=Physo144381;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_183 . repeat_region 51336 51360 . ? . description=dust scaffold_183 . repeat_region 51336 51360 . ? . description=trf scaffold_183 ensembl protein_coding_gene 48609 49544 . - . ID=Physo144382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830009;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 48609 49544 . - . ID=Physo144382;Parent=Physo144382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 48609 49430 . - 0 ID=Physo144382;Parent=Physo144382;rank=1 scaffold_183 . exon 48609 49544 . - . ID=Physo144382.1;Parent=Physo144382;constitutive=1;ensembl_phase=-1;rank=1 scaffold_183 ensembl protein_coding_gene 51376 52296 . + . ID=Physo144383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830010;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 51376 52296 . + . ID=Physo144383;Parent=Physo144383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 51376 52296 . + 0 ID=Physo144383;Parent=Physo144383;rank=1 scaffold_183 . exon 51376 52296 . + . ID=Physo144383.1;Parent=Physo144383;constitutive=1;rank=1 scaffold_183 ensembl protein_coding_gene 52606 55307 . - . ID=Physo144384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830011;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 52606 55307 . - . ID=Physo144384;Parent=Physo144384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 52606 52658 . - 0 ID=Physo144384;Parent=Physo144384;rank=8 scaffold_183 . exon 52606 52658 . - . ID=Physo144384.8;Parent=Physo144384;constitutive=1;ensembl_phase=1;rank=8 scaffold_183 . CDS 52721 52984 . - 0 ID=Physo144384;Parent=Physo144384;rank=7 scaffold_183 . exon 52721 52984 . - . ID=Physo144384.7;Parent=Physo144384;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_183 . CDS 53078 53570 . - 0 ID=Physo144384;Parent=Physo144384;rank=6 scaffold_183 . exon 53078 53570 . - . ID=Physo144384.6;Parent=Physo144384;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_183 . CDS 53595 53747 . - 0 ID=Physo144384;Parent=Physo144384;rank=5 scaffold_183 . exon 53595 53747 . - . ID=Physo144384.5;Parent=Physo144384;constitutive=1;rank=5 scaffold_183 . CDS 53858 54320 . - 0 ID=Physo144384;Parent=Physo144384;rank=4 scaffold_183 . exon 53858 54320 . - . ID=Physo144384.4;Parent=Physo144384;constitutive=1;ensembl_phase=2;rank=4 scaffold_183 . CDS 54502 54508 . - 0 ID=Physo144384;Parent=Physo144384;rank=3 scaffold_183 . exon 54502 54508 . - . ID=Physo144384.3;Parent=Physo144384;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_183 . CDS 54833 55114 . - 0 ID=Physo144384;Parent=Physo144384;rank=2 scaffold_183 . exon 54833 55114 . - . ID=Physo144384.2;Parent=Physo144384;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_183 . CDS 55178 55307 . - 0 ID=Physo144384;Parent=Physo144384;rank=1 scaffold_183 . exon 55178 55307 . - . ID=Physo144384.1;Parent=Physo144384;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_183 ensembl protein_coding_gene 56123 56515 . - . ID=Physo144385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830012;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 56123 56515 . - . ID=Physo144385;Parent=Physo144385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 56123 56515 . - 0 ID=Physo144385;Parent=Physo144385;rank=1 scaffold_183 . exon 56123 56515 . - . ID=Physo144385.1;Parent=Physo144385;constitutive=1;rank=1 scaffold_183 ensembl protein_coding_gene 57057 58654 . - . ID=Physo144386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830013;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 57057 58654 . - . ID=Physo144386;Parent=Physo144386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 57057 57860 . - 0 ID=Physo144386;Parent=Physo144386;rank=4 scaffold_183 . exon 57057 57860 . - . ID=Physo144386.4;Parent=Physo144386;constitutive=1;rank=4 scaffold_183 . CDS 57932 58153 . - 0 ID=Physo144386;Parent=Physo144386;rank=3 scaffold_183 . exon 57932 58153 . - . ID=Physo144386.3;Parent=Physo144386;constitutive=1;rank=3 scaffold_183 . CDS 58223 58397 . - 0 ID=Physo144386;Parent=Physo144386;rank=2 scaffold_183 . exon 58223 58397 . - . ID=Physo144386.2;Parent=Physo144386;constitutive=1;ensembl_phase=2;rank=2 scaffold_183 . CDS 58488 58654 . - 0 ID=Physo144386;Parent=Physo144386;rank=1 scaffold_183 . biological_region 58565 58569 0.999 + . logic_name=eponine scaffold_183 . biological_region 58574 58577 0.999 - . logic_name=eponine scaffold_183 . biological_region 60321 60321 0.999 + . logic_name=eponine scaffold_183 . biological_region 61707 61708 0.999 + . logic_name=eponine scaffold_183 . biological_region 63235 63241 0.999 + . logic_name=eponine scaffold_183 . biological_region 63907 63914 0.999 - . logic_name=eponine scaffold_183 . biological_region 63941 63945 0.999 - . logic_name=eponine scaffold_183 . exon 58488 58654 . - . ID=Physo144386.1;Parent=Physo144386;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_183 ensembl protein_coding_gene 60714 61424 . - . ID=Physo144388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830015;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 60714 61424 . - . ID=Physo144388;Parent=Physo144388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 60714 61424 . - 0 ID=Physo144388;Parent=Physo144388;rank=1 scaffold_183 . exon 60714 61424 . - . ID=Physo144388.1;Parent=Physo144388;constitutive=1;rank=1 scaffold_183 ensembl protein_coding_gene 61495 63936 . - . ID=Physo144389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830016;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 61495 63936 . - . ID=Physo144389;Parent=Physo144389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . exon 61495 63936 . - . ID=Physo144389.1;Parent=Physo144389;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_183 . CDS 61615 63936 . - 0 ID=Physo144389;Parent=Physo144389;rank=1 scaffold_183 ensembl protein_coding_gene 65682 67832 . - . ID=Physo144390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830017;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 65682 67832 . - . ID=Physo144390;Parent=Physo144390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 65682 67832 . - 0 ID=Physo144390;Parent=Physo144390;rank=1 scaffold_183 . exon 65682 67832 . - . ID=Physo144390.1;Parent=Physo144390;constitutive=1;rank=1 scaffold_183 ensembl protein_coding_gene 58920 60641 . + . ID=Physo158954;biotype=protein_coding;external_name=C_scaffold_183000002;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 58920 60641 . + . ID=Physo158954;Parent=Physo158954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 58920 59169 . + 0 ID=Physo158954;Parent=Physo158954;rank=1 scaffold_183 . exon 58920 59169 . + . ID=Physo158954.1;Parent=Physo158954;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_183 . CDS 59206 59853 . + 0 ID=Physo158954;Parent=Physo158954;rank=2 scaffold_183 . exon 59206 59853 . + . ID=Physo158954.2;Parent=Physo158954;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_183 . CDS 59878 60641 . + 0 ID=Physo158954;Parent=Physo158954;rank=3 scaffold_183 . exon 59878 60641 . + . ID=Physo158954.3;Parent=Physo158954;constitutive=1;ensembl_phase=1;rank=3 scaffold_183 . repeat_region 68264 68271 . ? . description=dust scaffold_183 . repeat_region 68606 68626 . ? . description=dust scaffold_183 . repeat_region 69617 69657 . ? . description=dust scaffold_183 . repeat_region 70626 70634 . ? . description=dust scaffold_183 . repeat_region 71204 71281 . ? . description=trf scaffold_183 . repeat_region 73549 73582 . ? . description=trf scaffold_183 ensembl protein_coding_gene 76617 77686 . + . ID=Physo144391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1830018;logic_name=jgi_physo1_1 scaffold_183 ensembl transcript 76617 77686 . + . ID=Physo144391;Parent=Physo144391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_183 . CDS 76617 77075 . + 0 ID=Physo144391;Parent=Physo144391;rank=1 scaffold_183 . exon 76617 77075 . + . ID=Physo144391.1;Parent=Physo144391;constitutive=1;rank=1 scaffold_183 . CDS 77211 77272 . + 0 ID=Physo144391;Parent=Physo144391;rank=2 scaffold_183 . exon 77211 77272 . + . ID=Physo144391.2;Parent=Physo144391;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_183 . CDS 77335 77686 . + 0 ID=Physo144391;Parent=Physo144391;rank=3 scaffold_183 . exon 77335 77686 . + . ID=Physo144391.3;Parent=Physo144391;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_182 1 78159 scaffold_182 . repeat_region 27 106 . ? . description=trf scaffold_182 . repeat_region 212 356 . ? . description=trf scaffold_182 . repeat_region 2851 2858 . ? . description=dust scaffold_182 . repeat_region 5376 5393 . ? . description=dust scaffold_182 . biological_region 6171 6172 0.999 + . logic_name=eponine scaffold_182 . biological_region 6682 6685 0.999 + . logic_name=eponine scaffold_182 . repeat_region 6716 6756 . ? . description=trf scaffold_182 . repeat_region 7219 7298 . ? . description=trf scaffold_182 . repeat_region 9698 9741 . ? . description=trf scaffold_182 ensembl protein_coding_gene 5656 6546 . - . ID=Physo144356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820001;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 5656 6546 . - . ID=Physo144356;Parent=Physo144356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 5656 5748 . - 0 ID=Physo144356;Parent=Physo144356;rank=3 scaffold_182 . exon 5656 5748 . - . ID=Physo144356.3;Parent=Physo144356;constitutive=1;rank=3 scaffold_182 . CDS 5914 6308 . - 0 ID=Physo144356;Parent=Physo144356;rank=2 scaffold_182 . exon 5914 6308 . - . ID=Physo144356.2;Parent=Physo144356;constitutive=1;ensembl_phase=1;rank=2 scaffold_182 . CDS 6393 6546 . - 0 ID=Physo144356;Parent=Physo144356;rank=1 scaffold_182 . exon 6393 6546 . - . ID=Physo144356.1;Parent=Physo144356;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_182 . repeat_region 11051 11097 . + . description=(CGAT)n scaffold_182 ensembl protein_coding_gene 10596 11033 . + . ID=Physo144357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820002;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 10596 11033 . + . ID=Physo144357;Parent=Physo144357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 10596 11033 . + 0 ID=Physo144357;Parent=Physo144357;rank=1 scaffold_182 . exon 10596 11033 . + . ID=Physo144357.1;Parent=Physo144357;constitutive=1;rank=1 scaffold_182 ensembl protein_coding_gene 13573 14988 . + . ID=Physo144358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820003;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 13573 14988 . + . ID=Physo144358;Parent=Physo144358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 13573 14988 . + 0 ID=Physo144358;Parent=Physo144358;rank=1 scaffold_182 . exon 13573 14988 . + . ID=Physo144358.1;Parent=Physo144358;constitutive=1;rank=1 scaffold_182 ensembl protein_coding_gene 15091 17060 . - . ID=Physo144359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820004;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 15091 17060 . - . ID=Physo144359;Parent=Physo144359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 15091 16125 . - 0 ID=Physo144359;Parent=Physo144359;rank=6 scaffold_182 . exon 15091 16125 . - . ID=Physo144359.6;Parent=Physo144359;constitutive=1;rank=6 scaffold_182 . CDS 16187 16264 . - 0 ID=Physo144359;Parent=Physo144359;rank=5 scaffold_182 . exon 16187 16264 . - . ID=Physo144359.5;Parent=Physo144359;constitutive=1;rank=5 scaffold_182 . CDS 16325 16433 . - 0 ID=Physo144359;Parent=Physo144359;rank=4 scaffold_182 . exon 16325 16433 . - . ID=Physo144359.4;Parent=Physo144359;constitutive=1;ensembl_phase=2;rank=4 scaffold_182 . CDS 16520 16658 . - 0 ID=Physo144359;Parent=Physo144359;rank=3 scaffold_182 . exon 16520 16658 . - . ID=Physo144359.3;Parent=Physo144359;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_182 . CDS 16793 16898 . - 0 ID=Physo144359;Parent=Physo144359;rank=2 scaffold_182 . exon 16793 16898 . - . ID=Physo144359.2;Parent=Physo144359;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_182 . CDS 17010 17060 . - 0 ID=Physo144359;Parent=Physo144359;rank=1 scaffold_182 . exon 17010 17060 . - . ID=Physo144359.1;Parent=Physo144359;constitutive=1;rank=1 scaffold_182 ensembl protein_coding_gene 17479 20407 . + . ID=Physo158946;biotype=protein_coding;external_name=C_scaffold_182000004;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 17479 20407 . + . ID=Physo158946;Parent=Physo158946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 17479 18405 . + 0 ID=Physo158946;Parent=Physo158946;rank=1 scaffold_182 . exon 17479 18405 . + . ID=Physo158946.1;Parent=Physo158946;constitutive=1;rank=1 scaffold_182 . CDS 18460 18512 . + 0 ID=Physo158946;Parent=Physo158946;rank=2 scaffold_182 . exon 18460 18512 . + . ID=Physo158946.2;Parent=Physo158946;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_182 . CDS 18589 18764 . + 0 ID=Physo158946;Parent=Physo158946;rank=3 scaffold_182 . exon 18589 18764 . + . ID=Physo158946.3;Parent=Physo158946;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_182 . CDS 18870 18977 . + 0 ID=Physo158946;Parent=Physo158946;rank=4 scaffold_182 . exon 18870 18977 . + . ID=Physo158946.4;Parent=Physo158946;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_182 . CDS 19322 19694 . + 0 ID=Physo158946;Parent=Physo158946;rank=5 scaffold_182 . exon 19322 19694 . + . ID=Physo158946.5;Parent=Physo158946;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_182 . CDS 19773 19822 . + 0 ID=Physo158946;Parent=Physo158946;rank=6 scaffold_182 . CDS 19919 20037 . + 0 ID=Physo158946;Parent=Physo158946;rank=7 scaffold_182 . CDS 20117 20231 . + 0 ID=Physo158946;Parent=Physo158946;rank=8 scaffold_182 . CDS 20319 20407 . + 0 ID=Physo158946;Parent=Physo158946;rank=9 scaffold_182 . biological_region 22586 22589 0.999 - . logic_name=eponine scaffold_182 . biological_region 23252 23255 0.999 - . logic_name=eponine scaffold_182 . biological_region 23289 23291 0.999 + . logic_name=eponine scaffold_182 . biological_region 24123 24129 0.999 - . logic_name=eponine scaffold_182 ensembl protein_coding_gene 20963 23427 . + . ID=Physo109633;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1820001;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 20963 23427 . + . ID=Physo109633;Parent=Physo109633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . exon 20963 21012 . + . ID=Physo109633.1;Parent=Physo109633;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_182 . CDS 21002 21012 . + 0 ID=Physo109633;Parent=Physo109633;rank=1 scaffold_182 . CDS 21096 23427 . + 0 ID=Physo109633;Parent=Physo109633;rank=2 scaffold_182 . exon 21096 23427 . + . ID=Physo109633.2;Parent=Physo109633;constitutive=1;ensembl_phase=2;rank=2 scaffold_182 ensembl protein_coding_gene 24082 30135 . + . ID=Physo144363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820008;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 24082 30135 . + . ID=Physo144363;Parent=Physo144363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 24082 25759 . + 0 ID=Physo144363;Parent=Physo144363;rank=1 scaffold_182 . exon 24082 25759 . + . ID=Physo144363.1;Parent=Physo144363;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_182 . CDS 25934 26961 . + 0 ID=Physo144363;Parent=Physo144363;rank=2 scaffold_182 . exon 25934 26961 . + . ID=Physo144363.2;Parent=Physo144363;constitutive=1;ensembl_phase=1;rank=2 scaffold_182 . CDS 27699 27817 . + 0 ID=Physo144363;Parent=Physo144363;rank=3 scaffold_182 . exon 27699 27817 . + . ID=Physo144363.3;Parent=Physo144363;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_182 . CDS 27885 30135 . + 0 ID=Physo144363;Parent=Physo144363;rank=4 scaffold_182 . exon 27885 30135 . + . ID=Physo144363.4;Parent=Physo144363;constitutive=1;ensembl_phase=2;rank=4 scaffold_182 . exon 19773 19822 . + . ID=Physo158946.6;Parent=Physo158946;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_182 . exon 19919 20037 . + . ID=Physo158946.7;Parent=Physo158946;constitutive=1;ensembl_phase=1;rank=7 scaffold_182 . exon 20117 20231 . + . ID=Physo158946.8;Parent=Physo158946;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_182 . exon 20319 20407 . + . ID=Physo158946.9;Parent=Physo158946;constitutive=1;ensembl_phase=1;rank=9 scaffold_182 . repeat_region 30815 30855 . ? . description=trf scaffold_182 . repeat_region 30818 30855 . ? . description=trf scaffold_182 ensembl protein_coding_gene 30292 31253 . - . ID=Physo144364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820009;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 30292 31253 . - . ID=Physo144364;Parent=Physo144364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 30292 31021 . - 0 ID=Physo144364;Parent=Physo144364;rank=2 scaffold_182 . exon 30292 31021 . - . ID=Physo144364.2;Parent=Physo144364;constitutive=1;ensembl_phase=2;rank=2 scaffold_182 . CDS 31099 31253 . - 0 ID=Physo144364;Parent=Physo144364;rank=1 scaffold_182 . exon 31099 31253 . - . ID=Physo144364.1;Parent=Physo144364;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_182 ensembl protein_coding_gene 32076 34763 . + . ID=Physo144365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820010;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 32076 34763 . + . ID=Physo144365;Parent=Physo144365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 32076 34763 . + 0 ID=Physo144365;Parent=Physo144365;rank=1 scaffold_182 . exon 32076 34763 . + . ID=Physo144365.1;Parent=Physo144365;constitutive=1;rank=1 scaffold_182 ensembl protein_coding_gene 34945 37830 . - . ID=Physo144366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820011;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 34945 37830 . - . ID=Physo144366;Parent=Physo144366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 34945 37830 . - 0 ID=Physo144366;Parent=Physo144366;rank=1 scaffold_182 . exon 34945 37830 . - . ID=Physo144366.1;Parent=Physo144366;constitutive=1;rank=1 scaffold_182 ensembl protein_coding_gene 39004 39735 . + . ID=Physo144367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820012;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 39004 39735 . + . ID=Physo144367;Parent=Physo144367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 39004 39133 . + 0 ID=Physo144367;Parent=Physo144367;rank=1 scaffold_182 . exon 39004 39133 . + . ID=Physo144367.1;Parent=Physo144367;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_182 . CDS 39202 39308 . + 0 ID=Physo144367;Parent=Physo144367;rank=2 scaffold_182 . CDS 39391 39735 . + 0 ID=Physo144367;Parent=Physo144367;rank=3 scaffold_182 . repeat_region 40573 40593 . ? . description=dust scaffold_182 . biological_region 44957 44963 0.999 - . logic_name=eponine scaffold_182 ensembl protein_coding_gene 47275 47499 . - . ID=Physo124870;biotype=protein_coding;external_name=estExt_Genewise1.C_1820020;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 47275 47499 . - . ID=Physo124870;Parent=Physo124870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 47275 47499 . - 0 ID=Physo124870;Parent=Physo124870;rank=1 scaffold_182 . exon 47275 47499 . - . ID=Physo124870.1;Parent=Physo124870;constitutive=1;rank=1 scaffold_182 . exon 39202 39308 . + . ID=Physo144367.2;Parent=Physo144367;constitutive=1;ensembl_phase=1;rank=2 scaffold_182 . exon 39391 39735 . + . ID=Physo144367.3;Parent=Physo144367;constitutive=1;rank=3 scaffold_182 ensembl protein_coding_gene 42248 43834 . + . ID=Physo144368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820013;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 42248 43834 . + . ID=Physo144368;Parent=Physo144368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 42248 43834 . + 0 ID=Physo144368;Parent=Physo144368;rank=1 scaffold_182 . exon 42248 43834 . + . ID=Physo144368.1;Parent=Physo144368;constitutive=1;rank=1 scaffold_182 ensembl protein_coding_gene 44711 46741 . + . ID=Physo144369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820014;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 44711 46741 . + . ID=Physo144369;Parent=Physo144369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 44711 45277 . + 0 ID=Physo144369;Parent=Physo144369;rank=1 scaffold_182 . exon 44711 45277 . + . ID=Physo144369.1;Parent=Physo144369;constitutive=1;rank=1 scaffold_182 . CDS 45343 45553 . + 0 ID=Physo144369;Parent=Physo144369;rank=2 scaffold_182 . exon 45343 45553 . + . ID=Physo144369.2;Parent=Physo144369;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_182 . CDS 45637 45695 . + 0 ID=Physo144369;Parent=Physo144369;rank=3 scaffold_182 . exon 45637 45695 . + . ID=Physo144369.3;Parent=Physo144369;constitutive=1;ensembl_phase=1;rank=3 scaffold_182 . CDS 45768 46568 . + 0 ID=Physo144369;Parent=Physo144369;rank=4 scaffold_182 . exon 45768 46741 . + . ID=Physo144369.4;Parent=Physo144369;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_182 ensembl protein_coding_gene 52157 53944 . - . ID=Physo144370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820015;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 52157 53944 . - . ID=Physo144370;Parent=Physo144370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 52157 53944 . - 0 ID=Physo144370;Parent=Physo144370;rank=1 scaffold_182 . exon 52157 53944 . - . ID=Physo144370.1;Parent=Physo144370;constitutive=1;rank=1 scaffold_182 ensembl protein_coding_gene 58010 59258 . + . ID=Physo144371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820016;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 58010 59258 . + . ID=Physo144371;Parent=Physo144371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 58010 58168 . + 0 ID=Physo144371;Parent=Physo144371;rank=1 scaffold_182 . exon 58010 58168 . + . ID=Physo144371.1;Parent=Physo144371;constitutive=1;rank=1 scaffold_182 . CDS 58206 59258 . + 0 ID=Physo144371;Parent=Physo144371;rank=2 scaffold_182 . exon 58206 59258 . + . ID=Physo144371.2;Parent=Physo144371;constitutive=1;rank=2 scaffold_182 . biological_region 61181 61182 0.999 - . logic_name=eponine scaffold_182 . biological_region 65066 65068 0.999 - . logic_name=eponine scaffold_182 . repeat_region 65189 65211 . ? . description=trf scaffold_182 . repeat_region 65189 65261 . ? . description=dust scaffold_182 . repeat_region 65496 65558 . ? . description=trf scaffold_182 . biological_region 65643 65649 0.999 - . logic_name=eponine scaffold_182 . repeat_region 65700 65749 . ? . description=trf scaffold_182 . biological_region 65729 65733 0.999 + . logic_name=eponine scaffold_182 . biological_region 65747 65749 0.999 - . logic_name=eponine scaffold_182 . biological_region 65889 65890 0.999 - . logic_name=eponine scaffold_182 . biological_region 66170 66175 0.999 - . logic_name=eponine scaffold_182 . biological_region 66250 66250 0.999 + . logic_name=eponine scaffold_182 . biological_region 66764 66768 0.999 + . logic_name=eponine scaffold_182 . biological_region 66796 66798 0.999 + . logic_name=eponine scaffold_182 . repeat_region 67015 67054 . ? . description=trf scaffold_182 . biological_region 67926 67928 0.999 + . logic_name=eponine scaffold_182 . biological_region 67961 67962 0.999 + . logic_name=eponine scaffold_182 . biological_region 68059 68059 0.999 - . logic_name=eponine scaffold_182 . biological_region 68067 68072 0.999 + . logic_name=eponine scaffold_182 . biological_region 68070 68072 0.999 - . logic_name=eponine scaffold_182 . biological_region 68095 68098 0.999 - . logic_name=eponine scaffold_182 . biological_region 68108 68111 0.999 + . logic_name=eponine scaffold_182 . biological_region 68169 68173 0.999 + . logic_name=eponine scaffold_182 . biological_region 68196 68203 0.999 - . logic_name=eponine scaffold_182 . biological_region 68224 68225 0.999 - . logic_name=eponine scaffold_182 . biological_region 68329 68331 0.999 - . logic_name=eponine scaffold_182 ensembl protein_coding_gene 61055 61765 . + . ID=Physo144372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820017;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 61055 61765 . + . ID=Physo144372;Parent=Physo144372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 61055 61433 . + 0 ID=Physo144372;Parent=Physo144372;rank=1 scaffold_182 . exon 61055 61433 . + . ID=Physo144372.1;Parent=Physo144372;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_182 . CDS 61662 61765 . + 0 ID=Physo144372;Parent=Physo144372;rank=2 scaffold_182 . exon 61662 61765 . + . ID=Physo144372.2;Parent=Physo144372;constitutive=1;ensembl_phase=1;rank=2 scaffold_182 ensembl protein_coding_gene 69395 73649 . - . ID=Physo144373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1820018;logic_name=jgi_physo1_1 scaffold_182 ensembl transcript 69395 73649 . - . ID=Physo144373;Parent=Physo144373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_182 . CDS 69395 71044 . - 0 ID=Physo144373;Parent=Physo144373;rank=8 scaffold_182 . exon 69395 71044 . - . ID=Physo144373.8;Parent=Physo144373;constitutive=1;rank=8 scaffold_182 . CDS 71106 71163 . - 0 ID=Physo144373;Parent=Physo144373;rank=7 scaffold_182 . exon 71106 71163 . - . ID=Physo144373.7;Parent=Physo144373;constitutive=1;ensembl_phase=2;rank=7 scaffold_182 . CDS 71192 71306 . - 0 ID=Physo144373;Parent=Physo144373;rank=6 scaffold_182 . exon 71192 71306 . - . ID=Physo144373.6;Parent=Physo144373;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_182 . CDS 71371 71500 . - 0 ID=Physo144373;Parent=Physo144373;rank=5 scaffold_182 . exon 71371 71500 . - . ID=Physo144373.5;Parent=Physo144373;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_182 . CDS 71570 71739 . - 0 ID=Physo144373;Parent=Physo144373;rank=4 scaffold_182 . exon 71570 71739 . - . ID=Physo144373.4;Parent=Physo144373;constitutive=1;ensembl_phase=1;rank=4 scaffold_182 . CDS 72065 72445 . - 0 ID=Physo144373;Parent=Physo144373;rank=3 scaffold_182 . exon 72065 72445 . - . ID=Physo144373.3;Parent=Physo144373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_182 . CDS 72465 72775 . - 0 ID=Physo144373;Parent=Physo144373;rank=2 scaffold_182 . exon 72465 72775 . - . ID=Physo144373.2;Parent=Physo144373;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_182 . CDS 72808 73649 . - 0 ID=Physo144373;Parent=Physo144373;rank=1 scaffold_182 . exon 72808 73649 . - . ID=Physo144373.1;Parent=Physo144373;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_181 1 78830 scaffold_181 . repeat_region 148 183 . ? . description=trf scaffold_181 . biological_region 1084 1087 0.999 + . logic_name=eponine scaffold_181 . biological_region 1099 1101 0.999 - . logic_name=eponine scaffold_181 . repeat_region 1189 14787 . ? . description=dust scaffold_181 ensembl protein_coding_gene 623 1153 . + . ID=Physo124842;biotype=protein_coding;external_name=estExt_Genewise1.C_1810019;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 623 1153 . + . ID=Physo124842;Parent=Physo124842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . exon 623 713 . + . ID=Physo124842.1;Parent=Physo124842;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_181 . CDS 629 713 . + 0 ID=Physo124842;Parent=Physo124842;rank=1 scaffold_181 . CDS 782 809 . + 0 ID=Physo124842;Parent=Physo124842;rank=2 scaffold_181 . exon 782 809 . + . ID=Physo124842.2;Parent=Physo124842;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_181 . CDS 892 1153 . + 0 ID=Physo124842;Parent=Physo124842;rank=3 scaffold_181 . exon 892 1153 . + . ID=Physo124842.3;Parent=Physo124842;constitutive=1;ensembl_phase=2;rank=3 scaffold_181 ensembl protein_coding_gene 16121 20336 . + . ID=Physo124824;biotype=protein_coding;external_name=estExt_Genewise1.C_1810001;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 16121 20336 . + . ID=Physo124824;Parent=Physo124824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . exon 16121 16228 . + . ID=Physo124824.1;Parent=Physo124824;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_181 . exon 16277 16458 . + . ID=Physo124824.2;Parent=Physo124824;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_181 . CDS 16385 16458 . + 0 ID=Physo124824;Parent=Physo124824;rank=1 scaffold_181 . CDS 16529 16817 . + 0 ID=Physo124824;Parent=Physo124824;rank=2 scaffold_181 . exon 16529 16817 . + . ID=Physo124824.3;Parent=Physo124824;constitutive=1;ensembl_phase=2;rank=3 scaffold_181 . CDS 17091 17915 . + 0 ID=Physo124824;Parent=Physo124824;rank=3 scaffold_181 . exon 17091 17915 . + . ID=Physo124824.4;Parent=Physo124824;constitutive=1;rank=4 scaffold_181 . CDS 19866 20336 . + 0 ID=Physo124824;Parent=Physo124824;rank=4 scaffold_181 . repeat_region 18557 19848 . ? . description=dust scaffold_181 . repeat_region 20921 20940 . ? . description=dust scaffold_181 . exon 19866 20336 . + . ID=Physo124824.5;Parent=Physo124824;constitutive=1;rank=5 scaffold_181 ensembl protein_coding_gene 28732 29379 . + . ID=Physo124830;biotype=protein_coding;external_name=estExt_Genewise1.C_1810007;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 28732 29379 . + . ID=Physo124830;Parent=Physo124830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . exon 28732 29379 . + . ID=Physo124830.1;Parent=Physo124830;constitutive=1;ensembl_phase=-1;rank=1 scaffold_181 . CDS 28942 29379 . + 0 ID=Physo124830;Parent=Physo124830;rank=1 scaffold_181 . repeat_region 32248 32317 . ? . description=trf scaffold_181 . repeat_region 33797 33823 . ? . description=trf scaffold_181 . repeat_region 33838 33873 . ? . description=trf scaffold_181 ensembl protein_coding_gene 30472 31142 . + . ID=Physo124831;biotype=protein_coding;external_name=estExt_Genewise1.C_1810008;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 30472 31142 . + . ID=Physo124831;Parent=Physo124831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . exon 30472 31142 . + . ID=Physo124831.1;Parent=Physo124831;constitutive=1;ensembl_phase=-1;rank=1 scaffold_181 . CDS 30897 31142 . + 0 ID=Physo124831;Parent=Physo124831;rank=1 scaffold_181 ensembl protein_coding_gene 31459 31902 . + . ID=Physo124832;biotype=protein_coding;external_name=estExt_Genewise1.C_1810009;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 31459 31902 . + . ID=Physo124832;Parent=Physo124832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . exon 31459 31686 . + . ID=Physo124832.1;Parent=Physo124832;constitutive=1;ensembl_phase=-1;rank=1 scaffold_181 . CDS 31489 31686 . + 0 ID=Physo124832;Parent=Physo124832;rank=1 scaffold_181 . CDS 31756 31902 . + 0 ID=Physo124832;Parent=Physo124832;rank=2 scaffold_181 . exon 31756 31902 . + . ID=Physo124832.2;Parent=Physo124832;constitutive=1;rank=2 scaffold_181 ensembl protein_coding_gene 38966 46500 . + . ID=Physo144349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1810003;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 38966 46500 . + . ID=Physo144349;Parent=Physo144349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . CDS 38966 39625 . + 0 ID=Physo144349;Parent=Physo144349;rank=1 scaffold_181 . exon 38966 39625 . + . ID=Physo144349.1;Parent=Physo144349;constitutive=1;rank=1 scaffold_181 . CDS 39677 40100 . + 0 ID=Physo144349;Parent=Physo144349;rank=2 scaffold_181 . CDS 40283 40512 . + 0 ID=Physo144349;Parent=Physo144349;rank=3 scaffold_181 . CDS 40572 41557 . + 0 ID=Physo144349;Parent=Physo144349;rank=4 scaffold_181 . CDS 41693 42121 . + 0 ID=Physo144349;Parent=Physo144349;rank=5 scaffold_181 . CDS 42244 42711 . + 0 ID=Physo144349;Parent=Physo144349;rank=6 scaffold_181 . CDS 43177 43297 . + 0 ID=Physo144349;Parent=Physo144349;rank=7 scaffold_181 . CDS 43502 43574 . + 0 ID=Physo144349;Parent=Physo144349;rank=8 scaffold_181 . CDS 43634 44237 . + 0 ID=Physo144349;Parent=Physo144349;rank=9 scaffold_181 . CDS 44338 44408 . + 0 ID=Physo144349;Parent=Physo144349;rank=10 scaffold_181 . CDS 44474 46500 . + 0 ID=Physo144349;Parent=Physo144349;rank=11 scaffold_181 . biological_region 40383 40389 0.999 - . logic_name=eponine scaffold_181 . biological_region 40407 40411 0.999 - . logic_name=eponine scaffold_181 . biological_region 40944 40946 0.999 - . logic_name=eponine scaffold_181 . biological_region 41017 41019 0.999 - . logic_name=eponine scaffold_181 . biological_region 41048 41052 0.999 - . logic_name=eponine scaffold_181 . biological_region 41304 41309 0.999 - . logic_name=eponine scaffold_181 . biological_region 41970 41976 0.999 + . logic_name=eponine scaffold_181 . biological_region 42712 42714 0.999 - . logic_name=eponine scaffold_181 . repeat_region 46631 46646 . ? . description=dust scaffold_181 . biological_region 48793 48795 0.999 - . logic_name=eponine scaffold_181 ensembl protein_coding_gene 46751 47062 . + . ID=Physo124836;biotype=protein_coding;external_name=estExt_Genewise1.C_1810013;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 46751 47062 . + . ID=Physo124836;Parent=Physo124836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . exon 46751 47062 . + . ID=Physo124836.1;Parent=Physo124836;constitutive=1;ensembl_phase=-1;rank=1 scaffold_181 . CDS 46919 47062 . + 0 ID=Physo124836;Parent=Physo124836;rank=1 scaffold_181 ensembl protein_coding_gene 47781 48362 . + . ID=Physo124839;biotype=protein_coding;external_name=estExt_Genewise1.C_1810016;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 47781 48362 . + . ID=Physo124839;Parent=Physo124839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . exon 47781 48362 . + . ID=Physo124839.1;Parent=Physo124839;constitutive=1;ensembl_phase=-1;rank=1 scaffold_181 . CDS 47790 48362 . + 0 ID=Physo124839;Parent=Physo124839;rank=1 scaffold_181 . exon 39677 40100 . + . ID=Physo144349.2;Parent=Physo144349;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_181 . exon 40283 40512 . + . ID=Physo144349.3;Parent=Physo144349;constitutive=1;ensembl_phase=1;rank=3 scaffold_181 . exon 40572 41557 . + . ID=Physo144349.4;Parent=Physo144349;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_181 . exon 41693 42121 . + . ID=Physo144349.5;Parent=Physo144349;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_181 . exon 42244 42711 . + . ID=Physo144349.6;Parent=Physo144349;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_181 . exon 43177 43297 . + . ID=Physo144349.7;Parent=Physo144349;constitutive=1;ensembl_phase=2;rank=7 scaffold_181 . exon 43502 43574 . + . ID=Physo144349.8;Parent=Physo144349;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_181 . exon 43634 44237 . + . ID=Physo144349.9;Parent=Physo144349;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_181 . exon 44338 44408 . + . ID=Physo144349.10;Parent=Physo144349;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_181 . exon 44474 46500 . + . ID=Physo144349.11;Parent=Physo144349;constitutive=1;ensembl_phase=1;rank=11 scaffold_181 . repeat_region 49255 49295 . ? . description=trf scaffold_181 ensembl protein_coding_gene 49395 55132 . - . ID=Physo144350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1810004;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 49395 55132 . - . ID=Physo144350;Parent=Physo144350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . CDS 49395 50319 . - 0 ID=Physo144350;Parent=Physo144350;rank=12 scaffold_181 . exon 49395 50319 . - . ID=Physo144350.12;Parent=Physo144350;constitutive=1;ensembl_phase=2;rank=12 scaffold_181 . CDS 50419 50853 . - 0 ID=Physo144350;Parent=Physo144350;rank=11 scaffold_181 . exon 50419 50853 . - . ID=Physo144350.11;Parent=Physo144350;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_181 . CDS 50905 50947 . - 0 ID=Physo144350;Parent=Physo144350;rank=10 scaffold_181 . exon 50905 50947 . - . ID=Physo144350.10;Parent=Physo144350;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_181 . CDS 51103 51544 . - 0 ID=Physo144350;Parent=Physo144350;rank=9 scaffold_181 . exon 51103 51544 . - . ID=Physo144350.9;Parent=Physo144350;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_181 . CDS 51579 51880 . - 0 ID=Physo144350;Parent=Physo144350;rank=8 scaffold_181 . exon 51579 51880 . - . ID=Physo144350.8;Parent=Physo144350;constitutive=1;ensembl_phase=1;rank=8 scaffold_181 . CDS 51961 52379 . - 0 ID=Physo144350;Parent=Physo144350;rank=7 scaffold_181 . exon 51961 52379 . - . ID=Physo144350.7;Parent=Physo144350;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_181 . CDS 53162 53596 . - 0 ID=Physo144350;Parent=Physo144350;rank=6 scaffold_181 . exon 53162 53596 . - . ID=Physo144350.6;Parent=Physo144350;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_181 . CDS 53648 53690 . - 0 ID=Physo144350;Parent=Physo144350;rank=5 scaffold_181 . exon 53648 53690 . - . ID=Physo144350.5;Parent=Physo144350;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_181 . CDS 53846 54287 . - 0 ID=Physo144350;Parent=Physo144350;rank=4 scaffold_181 . exon 53846 54287 . - . ID=Physo144350.4;Parent=Physo144350;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_181 . CDS 54322 54623 . - 0 ID=Physo144350;Parent=Physo144350;rank=3 scaffold_181 . exon 54322 54623 . - . ID=Physo144350.3;Parent=Physo144350;constitutive=1;ensembl_phase=1;rank=3 scaffold_181 . CDS 54704 54989 . - 0 ID=Physo144350;Parent=Physo144350;rank=2 scaffold_181 . exon 54704 54989 . - . ID=Physo144350.2;Parent=Physo144350;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_181 . CDS 55100 55132 . - 0 ID=Physo144350;Parent=Physo144350;rank=1 scaffold_181 . exon 55100 55132 . - . ID=Physo144350.1;Parent=Physo144350;constitutive=1;rank=1 scaffold_181 ensembl protein_coding_gene 57691 59767 . + . ID=Physo144351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1810005;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 57691 59767 . + . ID=Physo144351;Parent=Physo144351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . CDS 57691 59230 . + 0 ID=Physo144351;Parent=Physo144351;rank=1 scaffold_181 . exon 57691 59230 . + . ID=Physo144351.1;Parent=Physo144351;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_181 . CDS 59301 59767 . + 0 ID=Physo144351;Parent=Physo144351;rank=2 scaffold_181 . repeat_region 68309 68322 . ? . description=dust scaffold_181 . biological_region 68650 68654 0.999 - . logic_name=eponine scaffold_181 . biological_region 68668 68676 0.999 - . logic_name=eponine scaffold_181 ensembl protein_coding_gene 60642 61792 . + . ID=Physo124840;biotype=protein_coding;external_name=estExt_Genewise1.C_1810017;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 60642 61792 . + . ID=Physo124840;Parent=Physo124840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . exon 60642 61622 . + . ID=Physo124840.1;Parent=Physo124840;constitutive=1;ensembl_phase=-1;rank=1 scaffold_181 . CDS 61014 61622 . + 0 ID=Physo124840;Parent=Physo124840;rank=1 scaffold_181 . CDS 61661 61792 . + 0 ID=Physo124840;Parent=Physo124840;rank=2 scaffold_181 . exon 61661 61792 . + . ID=Physo124840.2;Parent=Physo124840;constitutive=1;rank=2 scaffold_181 . exon 59301 59767 . + . ID=Physo144351.2;Parent=Physo144351;constitutive=1;ensembl_phase=1;rank=2 scaffold_181 ensembl protein_coding_gene 65749 66938 . - . ID=Physo144352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1810006;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 65749 66938 . - . ID=Physo144352;Parent=Physo144352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . CDS 65749 66386 . - 0 ID=Physo144352;Parent=Physo144352;rank=2 scaffold_181 . exon 65749 66386 . - . ID=Physo144352.2;Parent=Physo144352;constitutive=1;ensembl_phase=1;rank=2 scaffold_181 . CDS 66524 66938 . - 0 ID=Physo144352;Parent=Physo144352;rank=1 scaffold_181 . exon 66524 66938 . - . ID=Physo144352.1;Parent=Physo144352;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_181 ensembl protein_coding_gene 68556 70262 . - . ID=Physo144353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1810007;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 68556 70262 . - . ID=Physo144353;Parent=Physo144353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . CDS 68556 70262 . - 0 ID=Physo144353;Parent=Physo144353;rank=1 scaffold_181 . exon 68556 70262 . - . ID=Physo144353.1;Parent=Physo144353;constitutive=1;rank=1 scaffold_181 . repeat_region 71011 71091 . ? . description=trf scaffold_181 . repeat_region 72591 72636 . ? . description=trf scaffold_181 . repeat_region 72675 72879 . ? . description=trf scaffold_181 . repeat_region 72990 73092 . ? . description=trf scaffold_181 . repeat_region 72994 73082 . ? . description=trf scaffold_181 ensembl protein_coding_gene 72708 72872 . + . ID=Physo124844;biotype=protein_coding;external_name=estExt_Genewise1.C_1810021;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 72708 72872 . + . ID=Physo124844;Parent=Physo124844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . CDS 72708 72872 . + 0 ID=Physo124844;Parent=Physo124844;rank=1 scaffold_181 . exon 72708 72872 . + . ID=Physo124844.1;Parent=Physo124844;constitutive=1;rank=1 scaffold_181 ensembl protein_coding_gene 74147 74536 . - . ID=Physo124845;biotype=protein_coding;external_name=estExt_Genewise1.C_1810022;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 74147 74536 . - . ID=Physo124845;Parent=Physo124845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . CDS 74147 74461 . - 0 ID=Physo124845;Parent=Physo124845;rank=1 scaffold_181 . exon 74147 74536 . - . ID=Physo124845.1;Parent=Physo124845;constitutive=1;ensembl_phase=-1;rank=1 scaffold_181 ensembl protein_coding_gene 75883 78731 . + . ID=Physo144355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1810009;logic_name=jgi_physo1_1 scaffold_181 ensembl transcript 75883 78731 . + . ID=Physo144355;Parent=Physo144355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_181 . CDS 75883 75996 . + 0 ID=Physo144355;Parent=Physo144355;rank=1 scaffold_181 . exon 75883 75996 . + . ID=Physo144355.1;Parent=Physo144355;constitutive=1;rank=1 scaffold_181 . CDS 76049 76455 . + 0 ID=Physo144355;Parent=Physo144355;rank=2 scaffold_181 . exon 76049 76455 . + . ID=Physo144355.2;Parent=Physo144355;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_181 . CDS 76526 77669 . + 0 ID=Physo144355;Parent=Physo144355;rank=3 scaffold_181 . exon 76526 77669 . + . ID=Physo144355.3;Parent=Physo144355;constitutive=1;ensembl_phase=2;rank=3 scaffold_181 . CDS 77979 78056 . + 0 ID=Physo144355;Parent=Physo144355;rank=4 scaffold_181 . exon 77979 78056 . + . ID=Physo144355.4;Parent=Physo144355;constitutive=1;rank=4 scaffold_181 . CDS 78121 78261 . + 0 ID=Physo144355;Parent=Physo144355;rank=5 scaffold_181 . exon 78121 78261 . + . ID=Physo144355.5;Parent=Physo144355;constitutive=1;rank=5 scaffold_181 . CDS 78326 78730 . + 0 ID=Physo144355;Parent=Physo144355;rank=6 scaffold_181 . exon 78326 78731 . + . ID=Physo144355.6;Parent=Physo144355;constitutive=1;ensembl_end_phase=-1;rank=6 ##gff-version 3 ##sequence-region scaffold_179 1 80416 scaffold_179 . repeat_region 965 991 . ? . description=trf scaffold_179 . repeat_region 1915 1922 . ? . description=dust scaffold_179 . repeat_region 3662 3670 . ? . description=dust scaffold_179 . repeat_region 5931 5963 . ? . description=trf scaffold_179 . biological_region 6467 6471 0.999 - . logic_name=eponine scaffold_179 . biological_region 6499 6500 0.999 - . logic_name=eponine scaffold_179 . biological_region 7653 7655 0.999 + . logic_name=eponine scaffold_179 ensembl protein_coding_gene 6366 8134 . + . ID=Physo144313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790001;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 6366 8134 . + . ID=Physo144313;Parent=Physo144313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 6366 7274 . + 0 ID=Physo144313;Parent=Physo144313;rank=1 scaffold_179 . exon 6366 7274 . + . ID=Physo144313.1;Parent=Physo144313;constitutive=1;rank=1 scaffold_179 . CDS 7433 8134 . + 0 ID=Physo144313;Parent=Physo144313;rank=2 scaffold_179 . exon 7433 8134 . + . ID=Physo144313.2;Parent=Physo144313;constitutive=1;rank=2 scaffold_179 ensembl protein_coding_gene 8284 9015 . - . ID=Physo158928;biotype=protein_coding;external_name=C_scaffold_179000001;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 8284 9015 . - . ID=Physo158928;Parent=Physo158928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 8284 8516 . - 0 ID=Physo158928;Parent=Physo158928;rank=2 scaffold_179 . exon 8284 8516 . - . ID=Physo158928.2;Parent=Physo158928;constitutive=1;ensembl_phase=1;rank=2 scaffold_179 . CDS 8601 9015 . - 0 ID=Physo158928;Parent=Physo158928;rank=1 scaffold_179 . exon 8601 9015 . - . ID=Physo158928.1;Parent=Physo158928;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_179 ensembl protein_coding_gene 9261 13013 . + . ID=Physo158929;biotype=protein_coding;external_name=C_scaffold_179000002;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 9261 13013 . + . ID=Physo158929;Parent=Physo158929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 9261 9422 . + 0 ID=Physo158929;Parent=Physo158929;rank=1 scaffold_179 . exon 9261 9422 . + . ID=Physo158929.1;Parent=Physo158929;constitutive=1;rank=1 scaffold_179 . CDS 9482 9676 . + 0 ID=Physo158929;Parent=Physo158929;rank=2 scaffold_179 . exon 9482 9676 . + . ID=Physo158929.2;Parent=Physo158929;constitutive=1;rank=2 scaffold_179 . CDS 10411 10461 . + 0 ID=Physo158929;Parent=Physo158929;rank=3 scaffold_179 . exon 10411 10461 . + . ID=Physo158929.3;Parent=Physo158929;constitutive=1;rank=3 scaffold_179 . CDS 10525 10599 . + 0 ID=Physo158929;Parent=Physo158929;rank=4 scaffold_179 . exon 10525 10599 . + . ID=Physo158929.4;Parent=Physo158929;constitutive=1;rank=4 scaffold_179 . CDS 10668 10870 . + 0 ID=Physo158929;Parent=Physo158929;rank=5 scaffold_179 . exon 10668 10870 . + . ID=Physo158929.5;Parent=Physo158929;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_179 . CDS 10940 11189 . + 0 ID=Physo158929;Parent=Physo158929;rank=6 scaffold_179 . exon 10940 11189 . + . ID=Physo158929.6;Parent=Physo158929;constitutive=1;ensembl_phase=2;rank=6 scaffold_179 . CDS 11260 11299 . + 0 ID=Physo158929;Parent=Physo158929;rank=7 scaffold_179 . exon 11260 11299 . + . ID=Physo158929.7;Parent=Physo158929;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_179 . CDS 11405 11487 . + 0 ID=Physo158929;Parent=Physo158929;rank=8 scaffold_179 . exon 11405 11487 . + . ID=Physo158929.8;Parent=Physo158929;constitutive=1;ensembl_phase=1;rank=8 scaffold_179 . CDS 11968 12101 . + 0 ID=Physo158929;Parent=Physo158929;rank=9 scaffold_179 . exon 11968 12101 . + . ID=Physo158929.9;Parent=Physo158929;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_179 . CDS 12371 12469 . + 0 ID=Physo158929;Parent=Physo158929;rank=10 scaffold_179 . exon 12371 12469 . + . ID=Physo158929.10;Parent=Physo158929;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_179 . CDS 12506 12750 . + 0 ID=Physo158929;Parent=Physo158929;rank=11 scaffold_179 . exon 12506 12750 . + . ID=Physo158929.11;Parent=Physo158929;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_179 . CDS 12829 13013 . + 0 ID=Physo158929;Parent=Physo158929;rank=12 scaffold_179 . exon 12829 13013 . + . ID=Physo158929.12;Parent=Physo158929;constitutive=1;ensembl_phase=1;rank=12 scaffold_179 ensembl protein_coding_gene 13285 14543 . - . ID=Physo158930;biotype=protein_coding;external_name=C_scaffold_179000003;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 13285 14543 . - . ID=Physo158930;Parent=Physo158930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 13285 13602 . - 0 ID=Physo158930;Parent=Physo158930;rank=4 scaffold_179 . exon 13285 13602 . - . ID=Physo158930.4;Parent=Physo158930;constitutive=1;rank=4 scaffold_179 . CDS 13699 13905 . - 0 ID=Physo158930;Parent=Physo158930;rank=3 scaffold_179 . exon 13699 13905 . - . ID=Physo158930.3;Parent=Physo158930;constitutive=1;rank=3 scaffold_179 . CDS 13992 14131 . - 0 ID=Physo158930;Parent=Physo158930;rank=2 scaffold_179 . exon 13992 14131 . - . ID=Physo158930.2;Parent=Physo158930;constitutive=1;ensembl_phase=1;rank=2 scaffold_179 . CDS 14171 14543 . - 0 ID=Physo158930;Parent=Physo158930;rank=1 scaffold_179 . exon 14171 14543 . - . ID=Physo158930.1;Parent=Physo158930;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_179 ensembl protein_coding_gene 14717 16219 . - . ID=Physo158931;biotype=protein_coding;external_name=C_scaffold_179000004;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 14717 16219 . - . ID=Physo158931;Parent=Physo158931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 14717 16219 . - 0 ID=Physo158931;Parent=Physo158931;rank=1 scaffold_179 . exon 14717 16219 . - . ID=Physo158931.1;Parent=Physo158931;constitutive=1;rank=1 scaffold_179 ensembl protein_coding_gene 16887 19068 . + . ID=Physo158933;biotype=protein_coding;external_name=C_scaffold_179000006;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 16887 19068 . + . ID=Physo158933;Parent=Physo158933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 16887 17096 . + 0 ID=Physo158933;Parent=Physo158933;rank=1 scaffold_179 . exon 16887 17096 . + . ID=Physo158933.1;Parent=Physo158933;constitutive=1;rank=1 scaffold_179 . CDS 17602 17814 . + 0 ID=Physo158933;Parent=Physo158933;rank=2 scaffold_179 . exon 17602 17814 . + . ID=Physo158933.2;Parent=Physo158933;constitutive=1;rank=2 scaffold_179 . CDS 17968 18042 . + 0 ID=Physo158933;Parent=Physo158933;rank=3 scaffold_179 . CDS 18112 18761 . + 0 ID=Physo158933;Parent=Physo158933;rank=4 scaffold_179 . CDS 18831 18886 . + 0 ID=Physo158933;Parent=Physo158933;rank=5 scaffold_179 . CDS 18908 19068 . + 0 ID=Physo158933;Parent=Physo158933;rank=6 scaffold_179 . biological_region 18191 18195 0.999 + . logic_name=eponine scaffold_179 . repeat_region 19153 19193 . ? . description=trf scaffold_179 . repeat_region 19153 19196 . ? . description=dust scaffold_179 . repeat_region 19153 19196 . ? . description=trf scaffold_179 . repeat_region 19153 19197 . ? . description=trf scaffold_179 . repeat_region 20860 20886 . ? . description=trf scaffold_179 . repeat_region 20860 20888 . ? . description=dust scaffold_179 . biological_region 20922 20926 0.999 + . logic_name=eponine scaffold_179 . repeat_region 21612 21621 . ? . description=dust scaffold_179 . biological_region 22546 22553 0.999 + . logic_name=eponine scaffold_179 . biological_region 22662 22664 0.999 + . logic_name=eponine scaffold_179 . biological_region 22702 22704 0.999 - . logic_name=eponine scaffold_179 . biological_region 22716 22721 0.999 - . logic_name=eponine scaffold_179 . biological_region 22776 22777 0.999 - . logic_name=eponine scaffold_179 . biological_region 22810 22812 0.999 + . logic_name=eponine scaffold_179 . biological_region 22875 22875 0.999 - . logic_name=eponine scaffold_179 ensembl protein_coding_gene 19078 21154 . - . ID=Physo109630;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1790001;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 19078 21154 . - . ID=Physo109630;Parent=Physo109630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . exon 19078 19922 . - . ID=Physo109630.3;Parent=Physo109630;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_179 . CDS 19149 19922 . - 0 ID=Physo109630;Parent=Physo109630;rank=3 scaffold_179 . CDS 19971 20690 . - 0 ID=Physo109630;Parent=Physo109630;rank=2 scaffold_179 . exon 19971 20690 . - . ID=Physo109630.2;Parent=Physo109630;constitutive=1;rank=2 scaffold_179 . CDS 21134 21154 . - 0 ID=Physo109630;Parent=Physo109630;rank=1 scaffold_179 . exon 21134 21154 . - . ID=Physo109630.1;Parent=Physo109630;constitutive=1;rank=1 scaffold_179 ensembl protein_coding_gene 26808 29551 . + . ID=Physo109631;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1790002;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 26808 29551 . + . ID=Physo109631;Parent=Physo109631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 26808 26915 . + 0 ID=Physo109631;Parent=Physo109631;rank=1 scaffold_179 . exon 26808 26915 . + . ID=Physo109631.1;Parent=Physo109631;constitutive=1;rank=1 scaffold_179 . CDS 26973 27962 . + 0 ID=Physo109631;Parent=Physo109631;rank=2 scaffold_179 . CDS 28035 28258 . + 0 ID=Physo109631;Parent=Physo109631;rank=3 scaffold_179 . CDS 28326 29172 . + 0 ID=Physo109631;Parent=Physo109631;rank=4 scaffold_179 . CDS 29354 29551 . + 0 ID=Physo109631;Parent=Physo109631;rank=5 scaffold_179 ensembl protein_coding_gene 22525 23372 . + . ID=Physo144320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790008;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 22525 23372 . + . ID=Physo144320;Parent=Physo144320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . exon 22525 23372 . + . ID=Physo144320.1;Parent=Physo144320;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_179 . CDS 22527 23321 . + 0 ID=Physo144320;Parent=Physo144320;rank=1 scaffold_179 ensembl protein_coding_gene 23532 24739 . - . ID=Physo144321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790009;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 23532 24739 . - . ID=Physo144321;Parent=Physo144321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 23532 23740 . - 0 ID=Physo144321;Parent=Physo144321;rank=2 scaffold_179 . exon 23532 23740 . - . ID=Physo144321.2;Parent=Physo144321;constitutive=1;ensembl_phase=1;rank=2 scaffold_179 . CDS 23839 24739 . - 0 ID=Physo144321;Parent=Physo144321;rank=1 scaffold_179 . exon 23839 24739 . - . ID=Physo144321.1;Parent=Physo144321;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_179 ensembl protein_coding_gene 25758 26528 . + . ID=Physo144322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790010;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 25758 26528 . + . ID=Physo144322;Parent=Physo144322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 25758 26528 . + 0 ID=Physo144322;Parent=Physo144322;rank=1 scaffold_179 . exon 25758 26528 . + . ID=Physo144322.1;Parent=Physo144322;constitutive=1;rank=1 scaffold_179 . exon 17968 18042 . + . ID=Physo158933.3;Parent=Physo158933;constitutive=1;rank=3 scaffold_179 . exon 18112 18761 . + . ID=Physo158933.4;Parent=Physo158933;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_179 . exon 18831 18886 . + . ID=Physo158933.5;Parent=Physo158933;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_179 . exon 18908 19068 . + . ID=Physo158933.6;Parent=Physo158933;constitutive=1;ensembl_phase=1;rank=6 scaffold_179 . exon 26973 27962 . + . ID=Physo109631.2;Parent=Physo109631;constitutive=1;rank=2 scaffold_179 . exon 28035 28258 . + . ID=Physo109631.3;Parent=Physo109631;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_179 . exon 28326 29172 . + . ID=Physo109631.4;Parent=Physo109631;constitutive=1;ensembl_phase=2;rank=4 scaffold_179 . exon 29354 29551 . + . ID=Physo109631.5;Parent=Physo109631;constitutive=1;rank=5 scaffold_179 ensembl protein_coding_gene 30751 32032 . + . ID=Physo144324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790012;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 30751 32032 . + . ID=Physo144324;Parent=Physo144324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 30751 30898 . + 0 ID=Physo144324;Parent=Physo144324;rank=1 scaffold_179 . exon 30751 30898 . + . ID=Physo144324.1;Parent=Physo144324;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_179 . CDS 31009 31070 . + 0 ID=Physo144324;Parent=Physo144324;rank=2 scaffold_179 . exon 31009 31070 . + . ID=Physo144324.2;Parent=Physo144324;constitutive=1;ensembl_phase=1;rank=2 scaffold_179 . CDS 31161 31982 . + 0 ID=Physo144324;Parent=Physo144324;rank=3 scaffold_179 . exon 31161 32032 . + . ID=Physo144324.3;Parent=Physo144324;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_179 ensembl protein_coding_gene 35471 36562 . - . ID=Physo144326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790014;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 35471 36562 . - . ID=Physo144326;Parent=Physo144326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . exon 35471 35586 . - . ID=Physo144326.3;Parent=Physo144326;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_179 . CDS 35513 35586 . - 0 ID=Physo144326;Parent=Physo144326;rank=3 scaffold_179 . CDS 35662 35691 . - 0 ID=Physo144326;Parent=Physo144326;rank=2 scaffold_179 . exon 35662 35691 . - . ID=Physo144326.2;Parent=Physo144326;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_179 . CDS 35773 36562 . - 0 ID=Physo144326;Parent=Physo144326;rank=1 scaffold_179 ensembl protein_coding_gene 32089 33265 . - . ID=Physo158939;biotype=protein_coding;external_name=C_scaffold_179000012;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 32089 33265 . - . ID=Physo158939;Parent=Physo158939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 32089 32505 . - 0 ID=Physo158939;Parent=Physo158939;rank=3 scaffold_179 . exon 32089 32505 . - . ID=Physo158939.3;Parent=Physo158939;constitutive=1;rank=3 scaffold_179 . CDS 32583 32703 . - 0 ID=Physo158939;Parent=Physo158939;rank=2 scaffold_179 . exon 32583 32703 . - . ID=Physo158939.2;Parent=Physo158939;constitutive=1;ensembl_phase=2;rank=2 scaffold_179 . CDS 32781 33265 . - 0 ID=Physo158939;Parent=Physo158939;rank=1 scaffold_179 . exon 32781 33265 . - . ID=Physo158939.1;Parent=Physo158939;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_179 . biological_region 36491 36493 0.999 - . logic_name=eponine scaffold_179 . biological_region 36544 36549 0.999 - . logic_name=eponine scaffold_179 . biological_region 36564 36568 0.999 - . logic_name=eponine scaffold_179 . biological_region 36621 36624 0.999 + . logic_name=eponine scaffold_179 . biological_region 37416 37418 0.999 + . logic_name=eponine scaffold_179 . biological_region 37437 37437 0.999 - . logic_name=eponine scaffold_179 . biological_region 37487 37492 0.999 - . logic_name=eponine scaffold_179 . repeat_region 37513 37521 . ? . description=dust scaffold_179 . biological_region 37592 37596 0.999 - . logic_name=eponine scaffold_179 . biological_region 37657 37657 0.999 - . logic_name=eponine scaffold_179 . biological_region 37775 37777 0.999 - . logic_name=eponine scaffold_179 . biological_region 38677 38679 0.999 + . logic_name=eponine scaffold_179 . biological_region 38707 38712 0.999 + . logic_name=eponine scaffold_179 . biological_region 38735 38739 0.999 - . logic_name=eponine scaffold_179 . biological_region 38796 38799 0.999 - . logic_name=eponine scaffold_179 . biological_region 38810 38814 0.999 - . logic_name=eponine scaffold_179 . biological_region 38940 38943 0.999 + . logic_name=eponine scaffold_179 . biological_region 38973 38974 0.999 - . logic_name=eponine scaffold_179 . biological_region 38993 38998 0.999 - . logic_name=eponine scaffold_179 . biological_region 39030 39035 0.999 - . logic_name=eponine scaffold_179 . biological_region 39048 39055 0.999 - . logic_name=eponine scaffold_179 . biological_region 39086 39090 0.999 + . logic_name=eponine scaffold_179 . biological_region 39199 39199 0.999 - . logic_name=eponine scaffold_179 . biological_region 40861 40863 0.999 + . logic_name=eponine scaffold_179 . biological_region 41830 41832 0.999 + . logic_name=eponine scaffold_179 . biological_region 43992 43997 0.999 + . logic_name=eponine scaffold_179 . biological_region 44539 44541 0.999 - . logic_name=eponine scaffold_179 . biological_region 44594 44597 0.999 + . logic_name=eponine scaffold_179 . exon 35773 36562 . - . ID=Physo144326.1;Parent=Physo144326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_179 ensembl protein_coding_gene 38381 39803 . + . ID=Physo144327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790015;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 38381 39803 . + . ID=Physo144327;Parent=Physo144327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 38381 39475 . + 0 ID=Physo144327;Parent=Physo144327;rank=1 scaffold_179 . exon 38381 39803 . + . ID=Physo144327.1;Parent=Physo144327;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_179 ensembl protein_coding_gene 39822 40970 . - . ID=Physo144328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790016;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 39822 40970 . - . ID=Physo144328;Parent=Physo144328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 39822 40970 . - 0 ID=Physo144328;Parent=Physo144328;rank=1 scaffold_179 . exon 39822 40970 . - . ID=Physo144328.1;Parent=Physo144328;constitutive=1;rank=1 scaffold_179 ensembl protein_coding_gene 42584 43343 . - . ID=Physo144329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790017;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 42584 43343 . - . ID=Physo144329;Parent=Physo144329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 42584 42949 . - 0 ID=Physo144329;Parent=Physo144329;rank=3 scaffold_179 . exon 42584 42949 . - . ID=Physo144329.3;Parent=Physo144329;constitutive=1;rank=3 scaffold_179 . CDS 43014 43264 . - 0 ID=Physo144329;Parent=Physo144329;rank=2 scaffold_179 . exon 43014 43264 . - . ID=Physo144329.2;Parent=Physo144329;constitutive=1;ensembl_phase=1;rank=2 scaffold_179 . CDS 43331 43343 . - 0 ID=Physo144329;Parent=Physo144329;rank=1 scaffold_179 . exon 43331 43343 . - . ID=Physo144329.1;Parent=Physo144329;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_179 ensembl protein_coding_gene 43596 46012 . + . ID=Physo144330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790018;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 43596 46012 . + . ID=Physo144330;Parent=Physo144330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . exon 43596 46012 . + . ID=Physo144330.1;Parent=Physo144330;constitutive=1;ensembl_phase=-1;rank=1 scaffold_179 . CDS 43883 46012 . + 0 ID=Physo144330;Parent=Physo144330;rank=1 scaffold_179 ensembl protein_coding_gene 46159 48926 . - . ID=Physo144331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790019;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 46159 48926 . - . ID=Physo144331;Parent=Physo144331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 46159 46329 . - 0 ID=Physo144331;Parent=Physo144331;rank=2 scaffold_179 . exon 46159 46329 . - . ID=Physo144331.2;Parent=Physo144331;constitutive=1;rank=2 scaffold_179 . CDS 46353 48926 . - 0 ID=Physo144331;Parent=Physo144331;rank=1 scaffold_179 . exon 46353 48926 . - . ID=Physo144331.1;Parent=Physo144331;constitutive=1;rank=1 scaffold_179 ensembl protein_coding_gene 50536 51954 . + . ID=Physo144332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790020;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 50536 51954 . + . ID=Physo144332;Parent=Physo144332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 50536 51954 . + 0 ID=Physo144332;Parent=Physo144332;rank=1 scaffold_179 . exon 50536 51954 . + . ID=Physo144332.1;Parent=Physo144332;constitutive=1;rank=1 scaffold_179 ensembl protein_coding_gene 52104 53307 . - . ID=Physo144333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790021;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 52104 53307 . - . ID=Physo144333;Parent=Physo144333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 52104 52726 . - 0 ID=Physo144333;Parent=Physo144333;rank=2 scaffold_179 . exon 52104 52726 . - . ID=Physo144333.2;Parent=Physo144333;constitutive=1;ensembl_phase=1;rank=2 scaffold_179 . CDS 52806 53307 . - 0 ID=Physo144333;Parent=Physo144333;rank=1 scaffold_179 . exon 52806 53307 . - . ID=Physo144333.1;Parent=Physo144333;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_179 . biological_region 53715 53723 0.999 + . logic_name=eponine scaffold_179 . biological_region 53784 53791 0.999 - . logic_name=eponine scaffold_179 . repeat_region 55048 55099 . ? . description=trf scaffold_179 . repeat_region 55048 55099 . ? . description=trf scaffold_179 . repeat_region 56552 56575 . ? . description=trf scaffold_179 . repeat_region 60317 60344 . ? . description=trf scaffold_179 ensembl protein_coding_gene 57801 58133 . - . ID=Physo144335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790023;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 57801 58133 . - . ID=Physo144335;Parent=Physo144335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 57801 58133 . - 0 ID=Physo144335;Parent=Physo144335;rank=1 scaffold_179 . exon 57801 58133 . - . ID=Physo144335.1;Parent=Physo144335;constitutive=1;rank=1 scaffold_179 ensembl protein_coding_gene 54574 57631 . + . ID=Physo158942;biotype=protein_coding;external_name=C_scaffold_179000015;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 54574 57631 . + . ID=Physo158942;Parent=Physo158942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 54574 55066 . + 0 ID=Physo158942;Parent=Physo158942;rank=1 scaffold_179 . exon 54574 55066 . + . ID=Physo158942.1;Parent=Physo158942;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_179 . CDS 55196 55451 . + 0 ID=Physo158942;Parent=Physo158942;rank=2 scaffold_179 . exon 55196 55451 . + . ID=Physo158942.2;Parent=Physo158942;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_179 . CDS 55503 55859 . + 0 ID=Physo158942;Parent=Physo158942;rank=3 scaffold_179 . exon 55503 55859 . + . ID=Physo158942.3;Parent=Physo158942;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_179 . CDS 56001 56271 . + 0 ID=Physo158942;Parent=Physo158942;rank=4 scaffold_179 . exon 56001 56271 . + . ID=Physo158942.4;Parent=Physo158942;constitutive=1;ensembl_phase=2;rank=4 scaffold_179 . CDS 56342 56447 . + 0 ID=Physo158942;Parent=Physo158942;rank=5 scaffold_179 . exon 56342 56447 . + . ID=Physo158942.5;Parent=Physo158942;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_179 . CDS 57012 57125 . + 0 ID=Physo158942;Parent=Physo158942;rank=6 scaffold_179 . exon 57012 57125 . + . ID=Physo158942.6;Parent=Physo158942;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_179 . CDS 57204 57631 . + 0 ID=Physo158942;Parent=Physo158942;rank=7 scaffold_179 . exon 57204 57631 . + . ID=Physo158942.7;Parent=Physo158942;constitutive=1;ensembl_phase=1;rank=7 scaffold_179 . repeat_region 67136 67147 . ? . description=dust scaffold_179 ensembl protein_coding_gene 71130 72345 . - . ID=Physo144336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790024;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 71130 72345 . - . ID=Physo144336;Parent=Physo144336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 71130 72299 . - 0 ID=Physo144336;Parent=Physo144336;rank=1 scaffold_179 . exon 71130 72345 . - . ID=Physo144336.1;Parent=Physo144336;constitutive=1;ensembl_phase=-1;rank=1 scaffold_179 . repeat_region 72396 72431 . ? . description=trf scaffold_179 . biological_region 73351 73356 0.999 + . logic_name=eponine scaffold_179 . biological_region 73380 73382 0.999 + . logic_name=eponine scaffold_179 . biological_region 73452 73453 0.999 - . logic_name=eponine scaffold_179 . biological_region 73470 73472 0.999 - . logic_name=eponine scaffold_179 . biological_region 73508 73509 0.999 + . logic_name=eponine scaffold_179 . biological_region 73524 73530 0.999 + . logic_name=eponine scaffold_179 . biological_region 73644 73645 0.999 - . logic_name=eponine scaffold_179 . repeat_region 74030 78049 . - . description=GypsyPi-1c_I-int scaffold_179 . biological_region 74131 74133 0.999 + . logic_name=eponine scaffold_179 . repeat_region 75945 76027 . ? . description=trf scaffold_179 . repeat_region 76007 76077 . ? . description=trf scaffold_179 . repeat_region 76058 76225 . ? . description=trf scaffold_179 . biological_region 77526 77529 0.999 + . logic_name=eponine scaffold_179 . biological_region 77545 77548 0.999 - . logic_name=eponine scaffold_179 . biological_region 77805 77806 0.999 - . logic_name=eponine scaffold_179 . repeat_region 78050 78352 . - . description=GypsyPi-1c_LTR scaffold_179 ensembl protein_coding_gene 73187 76638 . - . ID=Physo144337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790025;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 73187 76638 . - . ID=Physo144337;Parent=Physo144337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . exon 73187 73667 . - . ID=Physo144337.7;Parent=Physo144337;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_179 . CDS 73452 73667 . - 0 ID=Physo144337;Parent=Physo144337;rank=7 scaffold_179 . CDS 73763 74075 . - 0 ID=Physo144337;Parent=Physo144337;rank=6 scaffold_179 . exon 73763 74075 . - . ID=Physo144337.6;Parent=Physo144337;constitutive=1;ensembl_phase=2;rank=6 scaffold_179 . CDS 74147 74864 . - 0 ID=Physo144337;Parent=Physo144337;rank=5 scaffold_179 . exon 74147 74864 . - . ID=Physo144337.5;Parent=Physo144337;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_179 . CDS 74918 74999 . - 0 ID=Physo144337;Parent=Physo144337;rank=4 scaffold_179 . exon 74918 74999 . - . ID=Physo144337.4;Parent=Physo144337;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_179 . CDS 75123 75841 . - 0 ID=Physo144337;Parent=Physo144337;rank=3 scaffold_179 . exon 75123 75841 . - . ID=Physo144337.3;Parent=Physo144337;constitutive=1;ensembl_phase=1;rank=3 scaffold_179 . CDS 75876 76260 . - 0 ID=Physo144337;Parent=Physo144337;rank=2 scaffold_179 . exon 75876 76260 . - . ID=Physo144337.2;Parent=Physo144337;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_179 . CDS 76303 76638 . - 0 ID=Physo144337;Parent=Physo144337;rank=1 scaffold_179 . exon 76303 76638 . - . ID=Physo144337.1;Parent=Physo144337;constitutive=1;rank=1 scaffold_179 ensembl protein_coding_gene 76958 77962 . - . ID=Physo144338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790026;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 76958 77962 . - . ID=Physo144338;Parent=Physo144338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 76958 77962 . - 0 ID=Physo144338;Parent=Physo144338;rank=1 scaffold_179 . exon 76958 77962 . - . ID=Physo144338.1;Parent=Physo144338;constitutive=1;rank=1 scaffold_179 ensembl protein_coding_gene 78427 78852 . + . ID=Physo144339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1790027;logic_name=jgi_physo1_1 scaffold_179 ensembl transcript 78427 78852 . + . ID=Physo144339;Parent=Physo144339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_179 . CDS 78427 78852 . + 0 ID=Physo144339;Parent=Physo144339;rank=1 scaffold_179 . exon 78427 78852 . + . ID=Physo144339.1;Parent=Physo144339;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_180 1 80436 scaffold_180 . biological_region 179 181 0.999 + . logic_name=eponine scaffold_180 . repeat_region 400 435 . ? . description=trf scaffold_180 . repeat_region 440 470 . ? . description=trf scaffold_180 . repeat_region 1331 1366 . ? . description=trf scaffold_180 . repeat_region 1371 1401 . ? . description=trf scaffold_180 . repeat_region 5461 7308 . ? . description=dust scaffold_180 ensembl protein_coding_gene 7326 8588 . + . ID=Physo109632;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1800001;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 7326 8588 . + . ID=Physo109632;Parent=Physo109632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . CDS 7326 8588 . + 0 ID=Physo109632;Parent=Physo109632;rank=1 scaffold_180 . exon 7326 8588 . + . ID=Physo109632.1;Parent=Physo109632;constitutive=1;rank=1 scaffold_180 ensembl protein_coding_gene 40 286 . + . ID=Physo124823;biotype=protein_coding;external_name=estExt_Genewise1.C_1800008;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 40 286 . + . ID=Physo124823;Parent=Physo124823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . CDS 40 276 . + 0 ID=Physo124823;Parent=Physo124823;rank=1 scaffold_180 . exon 40 286 . + . ID=Physo124823.1;Parent=Physo124823;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_180 ensembl protein_coding_gene 4975 5417 . + . ID=Physo144340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1800001;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 4975 5417 . + . ID=Physo144340;Parent=Physo144340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . CDS 4975 5343 . + 0 ID=Physo144340;Parent=Physo144340;rank=1 scaffold_180 . exon 4975 5343 . + . ID=Physo144340.1;Parent=Physo144340;constitutive=1;rank=1 scaffold_180 . CDS 5379 5417 . + 0 ID=Physo144340;Parent=Physo144340;rank=2 scaffold_180 . exon 5379 5417 . + . ID=Physo144340.2;Parent=Physo144340;constitutive=1;rank=2 scaffold_180 . repeat_region 11992 13110 . + . description=GypsyPi-1c_I-int scaffold_180 . repeat_region 13110 13285 . - . description=GypsyPi-1c_I-int scaffold_180 . repeat_region 13460 14219 . + . description=GypsyPi-1c_I-int scaffold_180 ensembl protein_coding_gene 11621 14556 . + . ID=Physo144342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1800003;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 11621 14556 . + . ID=Physo144342;Parent=Physo144342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . CDS 11621 12819 . + 0 ID=Physo144342;Parent=Physo144342;rank=1 scaffold_180 . exon 11621 12819 . + . ID=Physo144342.1;Parent=Physo144342;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_180 . CDS 12923 13145 . + 0 ID=Physo144342;Parent=Physo144342;rank=2 scaffold_180 . exon 12923 13145 . + . ID=Physo144342.2;Parent=Physo144342;constitutive=1;ensembl_phase=2;rank=2 scaffold_180 . CDS 13295 13630 . + 0 ID=Physo144342;Parent=Physo144342;rank=3 scaffold_180 . exon 13295 13630 . + . ID=Physo144342.3;Parent=Physo144342;constitutive=1;rank=3 scaffold_180 . CDS 13700 13798 . + 0 ID=Physo144342;Parent=Physo144342;rank=4 scaffold_180 . exon 13700 13798 . + . ID=Physo144342.4;Parent=Physo144342;constitutive=1;rank=4 scaffold_180 . CDS 13841 14116 . + 0 ID=Physo144342;Parent=Physo144342;rank=5 scaffold_180 . exon 13841 14116 . + . ID=Physo144342.5;Parent=Physo144342;constitutive=1;rank=5 scaffold_180 . CDS 14282 14467 . + 0 ID=Physo144342;Parent=Physo144342;rank=6 scaffold_180 . exon 14282 14467 . + . ID=Physo144342.6;Parent=Physo144342;constitutive=1;rank=6 scaffold_180 . CDS 14542 14556 . + 0 ID=Physo144342;Parent=Physo144342;rank=7 scaffold_180 . exon 14542 14556 . + . ID=Physo144342.7;Parent=Physo144342;constitutive=1;rank=7 scaffold_180 ensembl protein_coding_gene 15264 16799 . - . ID=Physo144343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1800004;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 15264 16799 . - . ID=Physo144343;Parent=Physo144343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . CDS 15264 15579 . - 0 ID=Physo144343;Parent=Physo144343;rank=2 scaffold_180 . exon 15264 15579 . - . ID=Physo144343.2;Parent=Physo144343;constitutive=1;ensembl_phase=2;rank=2 scaffold_180 . CDS 15838 16799 . - 0 ID=Physo144343;Parent=Physo144343;rank=1 scaffold_180 . exon 15838 16799 . - . ID=Physo144343.1;Parent=Physo144343;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_180 . repeat_region 17970 17977 . ? . description=dust scaffold_180 . repeat_region 18232 18240 . ? . description=dust scaffold_180 . repeat_region 19095 19102 . ? . description=dust scaffold_180 . biological_region 20015 20015 0.999 + . logic_name=eponine scaffold_180 . repeat_region 20283 20290 . ? . description=dust scaffold_180 . biological_region 23528 23528 0.999 + . logic_name=eponine scaffold_180 . repeat_region 36966 37021 . ? . description=trf scaffold_180 . repeat_region 37600 37640 . ? . description=dust scaffold_180 . biological_region 37831 37834 0.999 + . logic_name=eponine scaffold_180 . biological_region 38216 38219 0.999 - . logic_name=eponine scaffold_180 . biological_region 38323 38326 0.999 + . logic_name=eponine scaffold_180 . biological_region 38614 38615 0.999 + . logic_name=eponine scaffold_180 . biological_region 38658 38661 0.999 + . logic_name=eponine scaffold_180 . biological_region 38714 38718 0.999 - . logic_name=eponine scaffold_180 . repeat_region 39013 39039 . ? . description=trf scaffold_180 . biological_region 44542 44543 0.999 - . logic_name=eponine scaffold_180 ensembl protein_coding_gene 37326 38247 . - . ID=Physo144344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1800005;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 37326 38247 . - . ID=Physo144344;Parent=Physo144344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . exon 37326 38247 . - . ID=Physo144344.1;Parent=Physo144344;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_180 . CDS 37328 38245 . - 0 ID=Physo144344;Parent=Physo144344;rank=1 scaffold_180 ensembl protein_coding_gene 38378 42028 . + . ID=Physo144345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1800006;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 38378 42028 . + . ID=Physo144345;Parent=Physo144345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . CDS 38378 38947 . + 0 ID=Physo144345;Parent=Physo144345;rank=1 scaffold_180 . exon 38378 38947 . + . ID=Physo144345.1;Parent=Physo144345;constitutive=1;rank=1 scaffold_180 . CDS 39044 39136 . + 0 ID=Physo144345;Parent=Physo144345;rank=2 scaffold_180 . exon 39044 39136 . + . ID=Physo144345.2;Parent=Physo144345;constitutive=1;rank=2 scaffold_180 . CDS 39260 40039 . + 0 ID=Physo144345;Parent=Physo144345;rank=3 scaffold_180 . exon 39260 40039 . + . ID=Physo144345.3;Parent=Physo144345;constitutive=1;rank=3 scaffold_180 . CDS 40082 42028 . + 0 ID=Physo144345;Parent=Physo144345;rank=4 scaffold_180 . exon 40082 42028 . + . ID=Physo144345.4;Parent=Physo144345;constitutive=1;rank=4 scaffold_180 ensembl protein_coding_gene 42894 80436 . - . ID=Physo144346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1800007;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 42894 80436 . - . ID=Physo144346;Parent=Physo144346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . CDS 42894 43694 . - 0 ID=Physo144346;Parent=Physo144346;rank=6 scaffold_180 . exon 42894 43694 . - . ID=Physo144346.6;Parent=Physo144346;constitutive=1;rank=6 scaffold_180 . CDS 43755 44000 . - 0 ID=Physo144346;Parent=Physo144346;rank=5 scaffold_180 . exon 43755 44000 . - . ID=Physo144346.5;Parent=Physo144346;constitutive=1;rank=5 scaffold_180 . CDS 44077 44266 . - 0 ID=Physo144346;Parent=Physo144346;rank=4 scaffold_180 . exon 44077 44266 . - . ID=Physo144346.4;Parent=Physo144346;constitutive=1;ensembl_phase=2;rank=4 scaffold_180 . CDS 44364 45767 . - 0 ID=Physo144346;Parent=Physo144346;rank=3 scaffold_180 . exon 44364 45767 . - . ID=Physo144346.3;Parent=Physo144346;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_180 . CDS 45963 47509 . - 0 ID=Physo144346;Parent=Physo144346;rank=2 scaffold_180 . CDS 78881 79630 . - 0 ID=Physo144346;Parent=Physo144346;rank=1 scaffold_180 . exon 45963 47509 . - . ID=Physo144346.2;Parent=Physo144346;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_180 . repeat_region 53627 78850 . ? . description=dust scaffold_180 ensembl protein_coding_gene 42894 80436 . - . ID=Physo144346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1800007;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 42894 80436 . - . ID=Physo144346;Parent=Physo144346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . CDS 42894 43694 . - 0 ID=Physo144346;Parent=Physo144346;rank=6 scaffold_180 . CDS 43755 44000 . - 0 ID=Physo144346;Parent=Physo144346;rank=5 scaffold_180 . CDS 44077 44266 . - 0 ID=Physo144346;Parent=Physo144346;rank=4 scaffold_180 . CDS 44364 45767 . - 0 ID=Physo144346;Parent=Physo144346;rank=3 scaffold_180 . CDS 45963 47509 . - 0 ID=Physo144346;Parent=Physo144346;rank=2 scaffold_180 . CDS 78881 79630 . - 0 ID=Physo144346;Parent=Physo144346;rank=1 scaffold_180 . repeat_region 53627 78850 . ? . description=dust scaffold_180 . repeat_region 78902 78947 . ? . description=trf scaffold_180 . repeat_region 78988 79022 . ? . description=trf scaffold_180 . repeat_region 79056 79115 . ? . description=trf scaffold_180 . repeat_region 79403 79448 . ? . description=trf scaffold_180 . repeat_region 79416 79517 . ? . description=trf scaffold_180 . biological_region 79428 79430 0.999 - . logic_name=eponine scaffold_180 . biological_region 79476 79478 0.999 - . logic_name=eponine scaffold_180 . repeat_region 79648 79751 . ? . description=trf scaffold_180 . biological_region 79659 79661 0.999 - . logic_name=eponine scaffold_180 . biological_region 79754 79754 0.999 - . logic_name=eponine scaffold_180 . repeat_region 79791 80436 . ? . description=trf scaffold_180 . biological_region 79960 79963 0.999 + . logic_name=eponine scaffold_180 . biological_region 80095 80098 0.999 + . logic_name=eponine scaffold_180 . biological_region 80109 80110 0.999 - . logic_name=eponine scaffold_180 . biological_region 80257 80260 0.999 + . logic_name=eponine scaffold_180 . repeat_region 80387 80435 . ? . description=trf scaffold_180 . biological_region 80427 80432 0.999 - . logic_name=eponine scaffold_180 ensembl protein_coding_gene 42894 80436 . - . ID=Physo144346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1800007;logic_name=jgi_physo1_1 scaffold_180 ensembl transcript 42894 80436 . - . ID=Physo144346;Parent=Physo144346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_180 . CDS 42894 43694 . - 0 ID=Physo144346;Parent=Physo144346;rank=6 scaffold_180 . CDS 43755 44000 . - 0 ID=Physo144346;Parent=Physo144346;rank=5 scaffold_180 . CDS 44077 44266 . - 0 ID=Physo144346;Parent=Physo144346;rank=4 scaffold_180 . CDS 44364 45767 . - 0 ID=Physo144346;Parent=Physo144346;rank=3 scaffold_180 . CDS 45963 47509 . - 0 ID=Physo144346;Parent=Physo144346;rank=2 scaffold_180 . CDS 78881 79630 . - 0 ID=Physo144346;Parent=Physo144346;rank=1 scaffold_180 . exon 78881 80436 . - . ID=Physo144346.1;Parent=Physo144346;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_167 1 81429 scaffold_167 . biological_region 1 2 0.999 + . logic_name=eponine scaffold_167 . biological_region 63 65 0.999 + . logic_name=eponine scaffold_167 . biological_region 169 174 0.999 + . logic_name=eponine scaffold_167 . biological_region 207 209 0.999 - . logic_name=eponine scaffold_167 . biological_region 216 217 0.999 - . logic_name=eponine scaffold_167 . biological_region 272 273 0.999 + . logic_name=eponine scaffold_167 . biological_region 4646 4651 0.999 + . logic_name=eponine scaffold_167 . biological_region 4650 4658 0.999 - . logic_name=eponine scaffold_167 . biological_region 4731 4738 0.999 + . logic_name=eponine scaffold_167 . biological_region 4780 4783 0.999 - . logic_name=eponine scaffold_167 . biological_region 4852 4860 0.999 - . logic_name=eponine scaffold_167 . repeat_region 5781 5861 . - . description=Polinton-1_PI scaffold_167 . repeat_region 6397 8953 . - . description=Polinton-1_PI scaffold_167 . repeat_region 6412 6419 . ? . description=dust scaffold_167 . repeat_region 6775 6785 . ? . description=dust scaffold_167 ensembl protein_coding_gene 2737 4906 . - . ID=Physo144116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1670002;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 2737 4906 . - . ID=Physo144116;Parent=Physo144116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . CDS 2737 3397 . - 0 ID=Physo144116;Parent=Physo144116;rank=3 scaffold_167 . exon 2737 3397 . - . ID=Physo144116.3;Parent=Physo144116;constitutive=1;ensembl_phase=2;rank=3 scaffold_167 . CDS 3476 3609 . - 0 ID=Physo144116;Parent=Physo144116;rank=2 scaffold_167 . exon 3476 3609 . - . ID=Physo144116.2;Parent=Physo144116;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_167 . CDS 3674 4906 . - 0 ID=Physo144116;Parent=Physo144116;rank=1 scaffold_167 . exon 3674 4906 . - . ID=Physo144116.1;Parent=Physo144116;constitutive=1;rank=1 scaffold_167 ensembl protein_coding_gene 1 1183 . + . ID=Physo158880;biotype=protein_coding;external_name=C_scaffold_167000001;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 1 1183 . + . ID=Physo158880;Parent=Physo158880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . exon 1 334 . + . ID=Physo158880.1;Parent=Physo158880;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_167 . CDS 3 334 . + 0 ID=Physo158880;Parent=Physo158880;rank=1 scaffold_167 . CDS 371 1040 . + 0 ID=Physo158880;Parent=Physo158880;rank=2 scaffold_167 . exon 371 1040 . + . ID=Physo158880.2;Parent=Physo158880;constitutive=1;ensembl_phase=2;rank=2 scaffold_167 . CDS 1112 1183 . + 0 ID=Physo158880;Parent=Physo158880;rank=3 scaffold_167 . exon 1112 1183 . + . ID=Physo158880.3;Parent=Physo158880;constitutive=1;rank=3 scaffold_167 . repeat_region 17260 21020 . - . description=Polinton-1_PI scaffold_167 . repeat_region 19030 19079 . ? . description=dust scaffold_167 . repeat_region 19579 19614 . ? . description=dust scaffold_167 . repeat_region 21827 21840 . ? . description=dust scaffold_167 . repeat_region 22845 24097 . - . description=Polinton-1_PI scaffold_167 . repeat_region 23228 23241 . ? . description=dust scaffold_167 . repeat_region 24290 27132 . - . description=Polinton-1_PI scaffold_167 ensembl protein_coding_gene 24212 27212 . - . ID=Physo144117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1670003;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 24212 27212 . - . ID=Physo144117;Parent=Physo144117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . CDS 24212 24223 . - 0 ID=Physo144117;Parent=Physo144117;rank=7 scaffold_167 . exon 24212 24223 . - . ID=Physo144117.7;Parent=Physo144117;constitutive=1;rank=7 scaffold_167 . CDS 24252 24670 . - 0 ID=Physo144117;Parent=Physo144117;rank=6 scaffold_167 . exon 24252 24670 . - . ID=Physo144117.6;Parent=Physo144117;constitutive=1;ensembl_phase=1;rank=6 scaffold_167 . CDS 24779 24882 . - 0 ID=Physo144117;Parent=Physo144117;rank=5 scaffold_167 . exon 24779 24882 . - . ID=Physo144117.5;Parent=Physo144117;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_167 . CDS 24904 25054 . - 0 ID=Physo144117;Parent=Physo144117;rank=4 scaffold_167 . exon 24904 25054 . - . ID=Physo144117.4;Parent=Physo144117;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_167 . CDS 25289 25723 . - 0 ID=Physo144117;Parent=Physo144117;rank=3 scaffold_167 . exon 25289 25723 . - . ID=Physo144117.3;Parent=Physo144117;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_167 . CDS 25959 26639 . - 0 ID=Physo144117;Parent=Physo144117;rank=2 scaffold_167 . exon 25959 26639 . - . ID=Physo144117.2;Parent=Physo144117;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_167 . CDS 26660 27212 . - 0 ID=Physo144117;Parent=Physo144117;rank=1 scaffold_167 . exon 26660 27212 . - . ID=Physo144117.1;Parent=Physo144117;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . repeat_region 29012 29051 . ? . description=trf scaffold_167 . repeat_region 29290 29313 . ? . description=trf scaffold_167 . biological_region 31119 31120 0.999 + . logic_name=eponine scaffold_167 . biological_region 31144 31148 0.999 + . logic_name=eponine scaffold_167 . biological_region 31247 31248 0.999 - . logic_name=eponine scaffold_167 . biological_region 31860 31861 0.999 + . logic_name=eponine scaffold_167 . biological_region 31875 31878 0.999 - . logic_name=eponine scaffold_167 ensembl protein_coding_gene 27779 29280 . - . ID=Physo144118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1670004;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 27779 29280 . - . ID=Physo144118;Parent=Physo144118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . exon 27779 28100 . - . ID=Physo144118.4;Parent=Physo144118;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_167 . CDS 27885 28100 . - 0 ID=Physo144118;Parent=Physo144118;rank=3 scaffold_167 . CDS 28157 28647 . - 0 ID=Physo144118;Parent=Physo144118;rank=2 scaffold_167 . exon 28157 28647 . - . ID=Physo144118.3;Parent=Physo144118;constitutive=1;ensembl_phase=1;rank=3 scaffold_167 . CDS 28720 28831 . - 0 ID=Physo144118;Parent=Physo144118;rank=1 scaffold_167 . exon 28720 28951 . - . ID=Physo144118.2;Parent=Physo144118;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_167 . exon 29073 29280 . - . ID=Physo144118.1;Parent=Physo144118;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_167 ensembl protein_coding_gene 35626 36385 . - . ID=Physo144120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1670006;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 35626 36385 . - . ID=Physo144120;Parent=Physo144120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . CDS 35626 36238 . - 0 ID=Physo144120;Parent=Physo144120;rank=2 scaffold_167 . exon 35626 36238 . - . ID=Physo144120.2;Parent=Physo144120;constitutive=1;ensembl_phase=2;rank=2 scaffold_167 . CDS 36333 36385 . - 0 ID=Physo144120;Parent=Physo144120;rank=1 scaffold_167 ensembl protein_coding_gene 32272 35448 . + . ID=Physo158882;biotype=protein_coding;external_name=C_scaffold_167000003;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 32272 35448 . + . ID=Physo158882;Parent=Physo158882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . CDS 32272 35076 . + 0 ID=Physo158882;Parent=Physo158882;rank=1 scaffold_167 . exon 32272 35076 . + . ID=Physo158882.1;Parent=Physo158882;constitutive=1;rank=1 scaffold_167 . CDS 35143 35448 . + 0 ID=Physo158882;Parent=Physo158882;rank=2 scaffold_167 . exon 35143 35448 . + . ID=Physo158882.2;Parent=Physo158882;constitutive=1;rank=2 scaffold_167 . repeat_region 38213 38228 . ? . description=dust scaffold_167 . repeat_region 39236 39243 . ? . description=dust scaffold_167 . exon 36333 36385 . - . ID=Physo144120.1;Parent=Physo144120;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_167 ensembl protein_coding_gene 36948 37469 . + . ID=Physo144121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1670007;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 36948 37469 . + . ID=Physo144121;Parent=Physo144121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . CDS 36948 37469 . + 0 ID=Physo144121;Parent=Physo144121;rank=1 scaffold_167 . exon 36948 37469 . + . ID=Physo144121.1;Parent=Physo144121;constitutive=1;rank=1 scaffold_167 . biological_region 45257 45262 0.999 - . logic_name=eponine scaffold_167 . repeat_region 46394 46430 . ? . description=trf scaffold_167 . biological_region 51059 51063 0.999 + . logic_name=eponine scaffold_167 . biological_region 54127 54128 0.999 - . logic_name=eponine scaffold_167 ensembl protein_coding_gene 47785 50973 . - . ID=Physo124608;biotype=protein_coding;external_name=estExt_Genewise1.C_1670012;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 47785 50973 . - . ID=Physo124608;Parent=Physo124608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . CDS 47785 48054 . - 0 ID=Physo124608;Parent=Physo124608;rank=4 scaffold_167 . exon 47785 48054 . - . ID=Physo124608.4;Parent=Physo124608;constitutive=1;rank=4 scaffold_167 . CDS 48112 48498 . - 0 ID=Physo124608;Parent=Physo124608;rank=3 scaffold_167 . exon 48112 48498 . - . ID=Physo124608.3;Parent=Physo124608;constitutive=1;rank=3 scaffold_167 . CDS 49163 49399 . - 0 ID=Physo124608;Parent=Physo124608;rank=2 scaffold_167 . exon 49163 49399 . - . ID=Physo124608.2;Parent=Physo124608;constitutive=1;rank=2 scaffold_167 . CDS 50341 50835 . - 0 ID=Physo124608;Parent=Physo124608;rank=1 scaffold_167 . exon 50341 50973 . - . ID=Physo124608.1;Parent=Physo124608;constitutive=1;ensembl_phase=-1;rank=1 scaffold_167 . repeat_region 55575 55587 . ? . description=dust scaffold_167 . repeat_region 57766 57774 . ? . description=dust scaffold_167 ensembl protein_coding_gene 56476 56981 . + . ID=Physo144122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1670008;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 56476 56981 . + . ID=Physo144122;Parent=Physo144122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . CDS 56476 56691 . + 0 ID=Physo144122;Parent=Physo144122;rank=1 scaffold_167 . exon 56476 56691 . + . ID=Physo144122.1;Parent=Physo144122;constitutive=1;rank=1 scaffold_167 . CDS 56772 56981 . + 0 ID=Physo144122;Parent=Physo144122;rank=2 scaffold_167 . exon 56772 56981 . + . ID=Physo144122.2;Parent=Physo144122;constitutive=1;rank=2 scaffold_167 . biological_region 63926 63929 0.999 - . logic_name=eponine scaffold_167 . biological_region 72107 72116 0.999 + . logic_name=eponine scaffold_167 . repeat_region 72126 72220 . ? . description=trf scaffold_167 . biological_region 72166 72167 0.999 + . logic_name=eponine scaffold_167 ensembl protein_coding_gene 63443 66742 . + . ID=Physo144123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1670009;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 63443 66742 . + . ID=Physo144123;Parent=Physo144123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . CDS 63443 63514 . + 0 ID=Physo144123;Parent=Physo144123;rank=1 scaffold_167 . exon 63443 63514 . + . ID=Physo144123.1;Parent=Physo144123;constitutive=1;rank=1 scaffold_167 . CDS 63594 64490 . + 0 ID=Physo144123;Parent=Physo144123;rank=2 scaffold_167 . exon 63594 64490 . + . ID=Physo144123.2;Parent=Physo144123;constitutive=1;rank=2 scaffold_167 . CDS 64526 66742 . + 0 ID=Physo144123;Parent=Physo144123;rank=3 scaffold_167 . exon 64526 66742 . + . ID=Physo144123.3;Parent=Physo144123;constitutive=1;rank=3 scaffold_167 ensembl protein_coding_gene 67640 74208 . - . ID=Physo144124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1670010;logic_name=jgi_physo1_1 scaffold_167 ensembl transcript 67640 74208 . - . ID=Physo144124;Parent=Physo144124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_167 . CDS 67640 67873 . - 0 ID=Physo144124;Parent=Physo144124;rank=8 scaffold_167 . exon 67640 67873 . - . ID=Physo144124.8;Parent=Physo144124;constitutive=1;rank=8 scaffold_167 . CDS 68164 68418 . - 0 ID=Physo144124;Parent=Physo144124;rank=7 scaffold_167 . exon 68164 68418 . - . ID=Physo144124.7;Parent=Physo144124;constitutive=1;rank=7 scaffold_167 . CDS 68981 70288 . - 0 ID=Physo144124;Parent=Physo144124;rank=6 scaffold_167 . exon 68981 70288 . - . ID=Physo144124.6;Parent=Physo144124;constitutive=1;rank=6 scaffold_167 . CDS 70310 70945 . - 0 ID=Physo144124;Parent=Physo144124;rank=5 scaffold_167 . exon 70310 70945 . - . ID=Physo144124.5;Parent=Physo144124;constitutive=1;rank=5 scaffold_167 . CDS 71024 71211 . - 0 ID=Physo144124;Parent=Physo144124;rank=4 scaffold_167 . exon 71024 71211 . - . ID=Physo144124.4;Parent=Physo144124;constitutive=1;ensembl_phase=1;rank=4 scaffold_167 . CDS 71253 71511 . - 0 ID=Physo144124;Parent=Physo144124;rank=3 scaffold_167 . exon 71253 71511 . - . ID=Physo144124.3;Parent=Physo144124;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_167 . CDS 71583 72650 . - 0 ID=Physo144124;Parent=Physo144124;rank=2 scaffold_167 . exon 71583 72650 . - . ID=Physo144124.2;Parent=Physo144124;constitutive=1;rank=2 scaffold_167 . CDS 73591 74208 . - 0 ID=Physo144124;Parent=Physo144124;rank=1 scaffold_167 . repeat_region 72743 73270 . ? . description=dust scaffold_167 . repeat_region 74208 74254 . ? . description=dust scaffold_167 ensembl tRNA_gene 78889 78961 . - . ID=EPrPSOG00000000053;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_167 ensembl transcript 78889 78961 . - . ID=EPrPSOT00000000053;Parent=EPrPSOG00000000053;biotype=tRNA;logic_name=ncrna_eg scaffold_167 ensembl tRNA_gene 80493 80565 . - . ID=EPrPSOG00000000055;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_167 ensembl transcript 80493 80565 . - . ID=EPrPSOT00000000055;Parent=EPrPSOG00000000055;biotype=tRNA;logic_name=ncrna_eg scaffold_167 ensembl tRNA_gene 79290 79362 . - . ID=EPrPSOG00000000142;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_167 ensembl transcript 79290 79362 . - . ID=EPrPSOT00000000142;Parent=EPrPSOG00000000142;biotype=tRNA;logic_name=ncrna_eg scaffold_167 ensembl tRNA_gene 80883 80955 . - . ID=EPrPSOG00000000187;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_167 ensembl transcript 80883 80955 . - . ID=EPrPSOT00000000187;Parent=EPrPSOG00000000187;biotype=tRNA;logic_name=ncrna_eg scaffold_167 ensembl tRNA_gene 79691 79763 . - . ID=EPrPSOG00000000211;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_167 ensembl transcript 79691 79763 . - . ID=EPrPSOT00000000211;Parent=EPrPSOG00000000211;biotype=tRNA;logic_name=ncrna_eg scaffold_167 ensembl tRNA_gene 78488 78560 . - . ID=EPrPSOG00000000284;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_167 ensembl transcript 78488 78560 . - . ID=EPrPSOT00000000284;Parent=EPrPSOG00000000284;biotype=tRNA;logic_name=ncrna_eg scaffold_167 ensembl tRNA_gene 80092 80164 . - . ID=EPrPSOG00000000293;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_167 ensembl transcript 80092 80164 . - . ID=EPrPSOT00000000293;Parent=EPrPSOG00000000293;biotype=tRNA;logic_name=ncrna_eg scaffold_167 . exon 78889 78961 . - . ID=EPrPSOE00000000053;Parent=EPrPSOT00000000053;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . exon 80493 80565 . - . ID=EPrPSOE00000000055;Parent=EPrPSOT00000000055;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . exon 79290 79362 . - . ID=EPrPSOE00000000142;Parent=EPrPSOT00000000142;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . exon 80883 80955 . - . ID=EPrPSOE00000000187;Parent=EPrPSOT00000000187;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . exon 79691 79763 . - . ID=EPrPSOE00000000211;Parent=EPrPSOT00000000211;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . exon 78488 78560 . - . ID=EPrPSOE00000000284;Parent=EPrPSOT00000000284;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . exon 80092 80164 . - . ID=EPrPSOE00000000293;Parent=EPrPSOT00000000293;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_167 . exon 73591 74208 . - . ID=Physo144124.1;Parent=Physo144124;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_177 1 81641 scaffold_177 . repeat_region 1265 1272 . ? . description=dust scaffold_177 . biological_region 2489 2492 0.999 - . logic_name=eponine scaffold_177 . biological_region 4923 4925 0.999 + . logic_name=eponine scaffold_177 . biological_region 6635 6641 0.999 + . logic_name=eponine scaffold_177 . biological_region 7345 7349 0.999 + . logic_name=eponine scaffold_177 ensembl protein_coding_gene 2274 3527 . - . ID=Physo144283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1770001;logic_name=jgi_physo1_1 scaffold_177 ensembl transcript 2274 3527 . - . ID=Physo144283;Parent=Physo144283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_177 . CDS 2274 2511 . - 0 ID=Physo144283;Parent=Physo144283;rank=4 scaffold_177 . exon 2274 2511 . - . ID=Physo144283.4;Parent=Physo144283;constitutive=1;ensembl_phase=2;rank=4 scaffold_177 . CDS 2912 2923 . - 0 ID=Physo144283;Parent=Physo144283;rank=3 scaffold_177 . exon 2912 2923 . - . ID=Physo144283.3;Parent=Physo144283;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_177 . CDS 3024 3134 . - 0 ID=Physo144283;Parent=Physo144283;rank=2 scaffold_177 . exon 3024 3134 . - . ID=Physo144283.2;Parent=Physo144283;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_177 . CDS 3415 3527 . - 0 ID=Physo144283;Parent=Physo144283;rank=1 scaffold_177 . exon 3415 3527 . - . ID=Physo144283.1;Parent=Physo144283;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_177 ensembl protein_coding_gene 3944 5242 . + . ID=Physo144284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1770002;logic_name=jgi_physo1_1 scaffold_177 ensembl transcript 3944 5242 . + . ID=Physo144284;Parent=Physo144284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_177 . CDS 3944 4011 . + 0 ID=Physo144284;Parent=Physo144284;rank=1 scaffold_177 . exon 3944 4011 . + . ID=Physo144284.1;Parent=Physo144284;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_177 . CDS 4200 4228 . + 0 ID=Physo144284;Parent=Physo144284;rank=2 scaffold_177 . exon 4200 4228 . + . ID=Physo144284.2;Parent=Physo144284;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_177 . CDS 4560 4717 . + 0 ID=Physo144284;Parent=Physo144284;rank=3 scaffold_177 . exon 4560 4717 . + . ID=Physo144284.3;Parent=Physo144284;constitutive=1;ensembl_phase=1;rank=3 scaffold_177 . CDS 4835 5242 . + 0 ID=Physo144284;Parent=Physo144284;rank=4 scaffold_177 . exon 4835 5242 . + . ID=Physo144284.4;Parent=Physo144284;constitutive=1;rank=4 scaffold_177 . repeat_region 11643 11689 . ? . description=trf scaffold_177 ensembl protein_coding_gene 15915 17985 . + . ID=Physo144285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1770003;logic_name=jgi_physo1_1 scaffold_177 ensembl transcript 15915 17985 . + . ID=Physo144285;Parent=Physo144285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_177 . CDS 15915 16895 . + 0 ID=Physo144285;Parent=Physo144285;rank=1 scaffold_177 . exon 15915 16895 . + . ID=Physo144285.1;Parent=Physo144285;constitutive=1;rank=1 scaffold_177 . CDS 17373 17516 . + 0 ID=Physo144285;Parent=Physo144285;rank=2 scaffold_177 . exon 17373 17516 . + . ID=Physo144285.2;Parent=Physo144285;constitutive=1;rank=2 scaffold_177 . CDS 17575 17651 . + 0 ID=Physo144285;Parent=Physo144285;rank=3 scaffold_177 . exon 17575 17651 . + . ID=Physo144285.3;Parent=Physo144285;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_177 . CDS 17686 17836 . + 0 ID=Physo144285;Parent=Physo144285;rank=4 scaffold_177 . exon 17686 17836 . + . ID=Physo144285.4;Parent=Physo144285;constitutive=1;ensembl_phase=2;rank=4 scaffold_177 . CDS 17932 17985 . + 0 ID=Physo144285;Parent=Physo144285;rank=5 scaffold_177 . exon 17932 17985 . + . ID=Physo144285.5;Parent=Physo144285;constitutive=1;rank=5 scaffold_177 . biological_region 18146 18151 0.999 + . logic_name=eponine scaffold_177 . repeat_region 18272 18282 . ? . description=dust scaffold_177 . repeat_region 22703 22710 . ? . description=dust scaffold_177 . repeat_region 23485 27214 . ? . description=dust scaffold_177 . repeat_region 27215 46091 . ? . description=dust scaffold_177 . repeat_region 27215 46091 . ? . description=dust scaffold_177 . repeat_region 46092 46424 . ? . description=trf scaffold_177 . repeat_region 46418 46747 . ? . description=trf scaffold_177 . repeat_region 46586 47059 . ? . description=trf scaffold_177 . repeat_region 46741 48738 . ? . description=trf scaffold_177 . repeat_region 46741 48738 . ? . description=trf scaffold_177 . repeat_region 54429 80757 . ? . description=dust scaffold_177 . repeat_region 54429 80757 . ? . description=dust scaffold_177 . repeat_region 80837 81339 . ? . description=trf scaffold_177 . repeat_region 80980 81005 . ? . description=trf scaffold_177 . repeat_region 81147 81172 . ? . description=trf scaffold_177 . repeat_region 81314 81640 . ? . description=trf scaffold_177 . repeat_region 81317 81635 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_178 1 81659 scaffold_178 . repeat_region 721 729 . ? . description=dust scaffold_178 . repeat_region 1491 1498 . ? . description=dust scaffold_178 . repeat_region 1512 1520 . ? . description=dust scaffold_178 . repeat_region 4151 4173 . ? . description=dust scaffold_178 . repeat_region 4212 4221 . ? . description=dust scaffold_178 . repeat_region 4503 4553 . ? . description=trf scaffold_178 . biological_region 5367 5371 0.999 - . logic_name=eponine scaffold_178 . biological_region 5549 5551 0.999 + . logic_name=eponine scaffold_178 . biological_region 5661 5661 0.999 - . logic_name=eponine scaffold_178 ensembl protein_coding_gene 5217 7608 . + . ID=Physo144286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780001;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 5217 7608 . + . ID=Physo144286;Parent=Physo144286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 5217 5744 . + 0 ID=Physo144286;Parent=Physo144286;rank=1 scaffold_178 . exon 5217 5744 . + . ID=Physo144286.1;Parent=Physo144286;constitutive=1;rank=1 scaffold_178 . CDS 5897 5992 . + 0 ID=Physo144286;Parent=Physo144286;rank=2 scaffold_178 . exon 5897 5992 . + . ID=Physo144286.2;Parent=Physo144286;constitutive=1;rank=2 scaffold_178 . CDS 6074 6145 . + 0 ID=Physo144286;Parent=Physo144286;rank=3 scaffold_178 . exon 6074 6145 . + . ID=Physo144286.3;Parent=Physo144286;constitutive=1;rank=3 scaffold_178 . CDS 6232 7608 . + 0 ID=Physo144286;Parent=Physo144286;rank=4 scaffold_178 . exon 6232 7608 . + . ID=Physo144286.4;Parent=Physo144286;constitutive=1;rank=4 scaffold_178 ensembl protein_coding_gene 8599 9706 . - . ID=Physo144287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780002;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 8599 9706 . - . ID=Physo144287;Parent=Physo144287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 8599 8629 . - 0 ID=Physo144287;Parent=Physo144287;rank=2 scaffold_178 . exon 8599 8629 . - . ID=Physo144287.2;Parent=Physo144287;constitutive=1;ensembl_phase=2;rank=2 scaffold_178 . CDS 8661 9706 . - 0 ID=Physo144287;Parent=Physo144287;rank=1 scaffold_178 . exon 8661 9706 . - . ID=Physo144287.1;Parent=Physo144287;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_178 ensembl protein_coding_gene 9960 13673 . + . ID=Physo144288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780003;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 9960 13673 . + . ID=Physo144288;Parent=Physo144288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 9960 10181 . + 0 ID=Physo144288;Parent=Physo144288;rank=1 scaffold_178 . exon 9960 10181 . + . ID=Physo144288.1;Parent=Physo144288;constitutive=1;rank=1 scaffold_178 . CDS 10416 10601 . + 0 ID=Physo144288;Parent=Physo144288;rank=2 scaffold_178 . exon 10416 10601 . + . ID=Physo144288.2;Parent=Physo144288;constitutive=1;rank=2 scaffold_178 . CDS 10685 10869 . + 0 ID=Physo144288;Parent=Physo144288;rank=3 scaffold_178 . exon 10685 10869 . + . ID=Physo144288.3;Parent=Physo144288;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_178 . CDS 10952 11404 . + 0 ID=Physo144288;Parent=Physo144288;rank=4 scaffold_178 . exon 10952 11404 . + . ID=Physo144288.4;Parent=Physo144288;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_178 . CDS 11441 13673 . + 0 ID=Physo144288;Parent=Physo144288;rank=5 scaffold_178 . exon 11441 13673 . + . ID=Physo144288.5;Parent=Physo144288;constitutive=1;ensembl_phase=2;rank=5 scaffold_178 ensembl protein_coding_gene 16344 17759 . + . ID=Physo144290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780005;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 16344 17759 . + . ID=Physo144290;Parent=Physo144290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 16344 16432 . + 0 ID=Physo144290;Parent=Physo144290;rank=1 scaffold_178 . exon 16344 16432 . + . ID=Physo144290.1;Parent=Physo144290;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_178 . CDS 16504 17023 . + 0 ID=Physo144290;Parent=Physo144290;rank=2 scaffold_178 . exon 16504 17023 . + . ID=Physo144290.2;Parent=Physo144290;constitutive=1;ensembl_phase=2;rank=2 scaffold_178 . CDS 17085 17155 . + 0 ID=Physo144290;Parent=Physo144290;rank=3 scaffold_178 . exon 17085 17155 . + . ID=Physo144290.3;Parent=Physo144290;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_178 . CDS 17232 17454 . + 0 ID=Physo144290;Parent=Physo144290;rank=4 scaffold_178 . exon 17232 17454 . + . ID=Physo144290.4;Parent=Physo144290;constitutive=1;ensembl_phase=2;rank=4 scaffold_178 . CDS 17577 17759 . + 0 ID=Physo144290;Parent=Physo144290;rank=5 scaffold_178 . exon 17577 17759 . + . ID=Physo144290.5;Parent=Physo144290;constitutive=1;rank=5 scaffold_178 ensembl protein_coding_gene 14256 15975 . + . ID=Physo158915;biotype=protein_coding;external_name=C_scaffold_178000003;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 14256 15975 . + . ID=Physo158915;Parent=Physo158915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 14256 14546 . + 0 ID=Physo158915;Parent=Physo158915;rank=1 scaffold_178 . exon 14256 14546 . + . ID=Physo158915.1;Parent=Physo158915;constitutive=1;rank=1 scaffold_178 . CDS 14634 15573 . + 0 ID=Physo158915;Parent=Physo158915;rank=2 scaffold_178 . exon 14634 15573 . + . ID=Physo158915.2;Parent=Physo158915;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_178 . CDS 15656 15975 . + 0 ID=Physo158915;Parent=Physo158915;rank=3 scaffold_178 . exon 15656 15975 . + . ID=Physo158915.3;Parent=Physo158915;constitutive=1;ensembl_phase=1;rank=3 scaffold_178 . biological_region 18196 18198 0.999 + . logic_name=eponine scaffold_178 . biological_region 18209 18210 0.999 + . logic_name=eponine scaffold_178 . biological_region 18310 18315 0.999 + . logic_name=eponine scaffold_178 . repeat_region 18390 18421 . ? . description=dust scaffold_178 . repeat_region 18390 18421 . ? . description=trf scaffold_178 . repeat_region 18391 18447 . ? . description=trf scaffold_178 . biological_region 18590 18595 0.999 - . logic_name=eponine scaffold_178 . biological_region 18648 18650 0.999 + . logic_name=eponine scaffold_178 . biological_region 19207 19211 0.999 + . logic_name=eponine scaffold_178 . biological_region 19357 19362 0.999 - . logic_name=eponine scaffold_178 . biological_region 19380 19384 0.999 - . logic_name=eponine scaffold_178 . biological_region 20298 20300 0.999 - . logic_name=eponine scaffold_178 . biological_region 20626 20629 0.999 + . logic_name=eponine scaffold_178 . biological_region 20790 20796 0.999 - . logic_name=eponine scaffold_178 . biological_region 20892 20896 0.999 - . logic_name=eponine scaffold_178 . biological_region 20914 20922 0.999 - . logic_name=eponine scaffold_178 . biological_region 21180 21181 0.999 + . logic_name=eponine scaffold_178 . biological_region 21203 21215 0.999 - . logic_name=eponine scaffold_178 . biological_region 21288 21289 0.999 - . logic_name=eponine scaffold_178 . biological_region 21525 21526 0.999 + . logic_name=eponine scaffold_178 . biological_region 21601 21606 0.999 + . logic_name=eponine scaffold_178 . biological_region 21629 21629 0.999 - . logic_name=eponine scaffold_178 . biological_region 21649 21650 0.999 + . logic_name=eponine scaffold_178 . repeat_region 22123 22152 . ? . description=trf scaffold_178 . biological_region 22395 22401 0.999 + . logic_name=eponine scaffold_178 . biological_region 23538 23541 0.999 - . logic_name=eponine scaffold_178 . biological_region 24767 24770 0.999 - . logic_name=eponine scaffold_178 . biological_region 25044 25045 0.999 + . logic_name=eponine scaffold_178 . biological_region 25684 25689 0.999 - . logic_name=eponine scaffold_178 . biological_region 26878 26880 0.999 + . logic_name=eponine scaffold_178 ensembl protein_coding_gene 20976 22068 . + . ID=Physo144292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780007;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 20976 22068 . + . ID=Physo144292;Parent=Physo144292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . exon 20976 22068 . + . ID=Physo144292.1;Parent=Physo144292;constitutive=1;ensembl_phase=-1;rank=1 scaffold_178 . CDS 21019 22068 . + 0 ID=Physo144292;Parent=Physo144292;rank=1 scaffold_178 ensembl protein_coding_gene 22253 25396 . - . ID=Physo144293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780008;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 22253 25396 . - . ID=Physo144293;Parent=Physo144293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 22253 25396 . - 0 ID=Physo144293;Parent=Physo144293;rank=1 scaffold_178 . exon 22253 25396 . - . ID=Physo144293.1;Parent=Physo144293;constitutive=1;rank=1 scaffold_178 ensembl protein_coding_gene 25828 26487 . + . ID=Physo144294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780009;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 25828 26487 . + . ID=Physo144294;Parent=Physo144294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 25828 26487 . + 0 ID=Physo144294;Parent=Physo144294;rank=1 scaffold_178 . exon 25828 26487 . + . ID=Physo144294.1;Parent=Physo144294;constitutive=1;rank=1 scaffold_178 ensembl protein_coding_gene 18446 18733 . - . ID=Physo158917;biotype=protein_coding;external_name=C_scaffold_178000005;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 18446 18733 . - . ID=Physo158917;Parent=Physo158917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 18446 18733 . - 0 ID=Physo158917;Parent=Physo158917;rank=1 scaffold_178 . exon 18446 18733 . - . ID=Physo158917.1;Parent=Physo158917;constitutive=1;rank=1 scaffold_178 ensembl protein_coding_gene 27543 28816 . - . ID=Physo158919;biotype=protein_coding;external_name=C_scaffold_178000007;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 27543 28816 . - . ID=Physo158919;Parent=Physo158919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 27543 27646 . - 0 ID=Physo158919;Parent=Physo158919;rank=3 scaffold_178 . exon 27543 27646 . - . ID=Physo158919.3;Parent=Physo158919;constitutive=1;ensembl_phase=1;rank=3 scaffold_178 . CDS 27718 28164 . - 0 ID=Physo158919;Parent=Physo158919;rank=2 scaffold_178 . exon 27718 28164 . - . ID=Physo158919.2;Parent=Physo158919;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_178 . CDS 28666 28816 . - 0 ID=Physo158919;Parent=Physo158919;rank=1 scaffold_178 . exon 28666 28816 . - . ID=Physo158919.1;Parent=Physo158919;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_178 ensembl protein_coding_gene 29402 32320 . + . ID=Physo158920;biotype=protein_coding;external_name=C_scaffold_178000008;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 29402 32320 . + . ID=Physo158920;Parent=Physo158920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 29402 29614 . + 0 ID=Physo158920;Parent=Physo158920;rank=1 scaffold_178 . exon 29402 29614 . + . ID=Physo158920.1;Parent=Physo158920;constitutive=1;rank=1 scaffold_178 . CDS 29680 30213 . + 0 ID=Physo158920;Parent=Physo158920;rank=2 scaffold_178 . exon 29680 30213 . + . ID=Physo158920.2;Parent=Physo158920;constitutive=1;rank=2 scaffold_178 . CDS 30295 32202 . + 0 ID=Physo158920;Parent=Physo158920;rank=3 scaffold_178 . exon 30295 32202 . + . ID=Physo158920.3;Parent=Physo158920;constitutive=1;rank=3 scaffold_178 . CDS 32306 32320 . + 0 ID=Physo158920;Parent=Physo158920;rank=4 scaffold_178 . exon 32306 32320 . + . ID=Physo158920.4;Parent=Physo158920;constitutive=1;rank=4 scaffold_178 ensembl protein_coding_gene 32390 34289 . - . ID=Physo158923;biotype=protein_coding;external_name=C_scaffold_178000011;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 32390 34289 . - . ID=Physo158923;Parent=Physo158923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 32390 32578 . - 0 ID=Physo158923;Parent=Physo158923;rank=4 scaffold_178 . exon 32390 32578 . - . ID=Physo158923.4;Parent=Physo158923;constitutive=1;rank=4 scaffold_178 . CDS 32645 33400 . - 0 ID=Physo158923;Parent=Physo158923;rank=3 scaffold_178 . exon 32645 33400 . - . ID=Physo158923.3;Parent=Physo158923;constitutive=1;rank=3 scaffold_178 . CDS 33539 34107 . - 0 ID=Physo158923;Parent=Physo158923;rank=2 scaffold_178 . exon 33539 34107 . - . ID=Physo158923.2;Parent=Physo158923;constitutive=1;ensembl_phase=1;rank=2 scaffold_178 . CDS 34187 34289 . - 0 ID=Physo158923;Parent=Physo158923;rank=1 scaffold_178 . exon 34187 34289 . - . ID=Physo158923.1;Parent=Physo158923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_178 ensembl protein_coding_gene 34735 35800 . + . ID=Physo158926;biotype=protein_coding;external_name=C_scaffold_178000014;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 34735 35800 . + . ID=Physo158926;Parent=Physo158926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 34735 35163 . + 0 ID=Physo158926;Parent=Physo158926;rank=1 scaffold_178 . exon 34735 35163 . + . ID=Physo158926.1;Parent=Physo158926;constitutive=1;rank=1 scaffold_178 . CDS 35209 35573 . + 0 ID=Physo158926;Parent=Physo158926;rank=2 scaffold_178 . exon 35209 35573 . + . ID=Physo158926.2;Parent=Physo158926;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_178 . CDS 35598 35730 . + 0 ID=Physo158926;Parent=Physo158926;rank=3 scaffold_178 . exon 35598 35730 . + . ID=Physo158926.3;Parent=Physo158926;constitutive=1;ensembl_phase=2;rank=3 scaffold_178 . CDS 35786 35800 . + 0 ID=Physo158926;Parent=Physo158926;rank=4 scaffold_178 . exon 35786 35800 . + . ID=Physo158926.4;Parent=Physo158926;constitutive=1;rank=4 scaffold_178 ensembl protein_coding_gene 36140 37060 . - . ID=Physo158927;biotype=protein_coding;external_name=C_scaffold_178000015;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 36140 37060 . - . ID=Physo158927;Parent=Physo158927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 36140 36298 . - 0 ID=Physo158927;Parent=Physo158927;rank=3 scaffold_178 . exon 36140 36298 . - . ID=Physo158927.3;Parent=Physo158927;constitutive=1;rank=3 scaffold_178 . CDS 36380 36550 . - 0 ID=Physo158927;Parent=Physo158927;rank=2 scaffold_178 . CDS 36602 37060 . - 0 ID=Physo158927;Parent=Physo158927;rank=1 scaffold_178 . biological_region 36684 36688 0.999 + . logic_name=eponine scaffold_178 . biological_region 36814 36817 0.999 - . logic_name=eponine scaffold_178 . biological_region 36816 36821 0.999 + . logic_name=eponine scaffold_178 . biological_region 36839 36841 0.999 + . logic_name=eponine scaffold_178 . biological_region 37761 37766 0.999 + . logic_name=eponine scaffold_178 . repeat_region 40180 40280 . ? . description=trf scaffold_178 . biological_region 41360 41361 0.999 + . logic_name=eponine scaffold_178 . biological_region 42801 42802 0.999 + . logic_name=eponine scaffold_178 . biological_region 42971 42973 0.999 - . logic_name=eponine scaffold_178 . biological_region 42993 42996 0.999 - . logic_name=eponine scaffold_178 . biological_region 45021 45025 0.999 - . logic_name=eponine scaffold_178 . repeat_region 45078 45085 . ? . description=dust scaffold_178 ensembl protein_coding_gene 43407 44786 . + . ID=Physo109628;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1780001;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 43407 44786 . + . ID=Physo109628;Parent=Physo109628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . exon 43407 43679 . + . ID=Physo109628.1;Parent=Physo109628;constitutive=1;ensembl_phase=-1;rank=1 scaffold_178 . CDS 43431 43679 . + 0 ID=Physo109628;Parent=Physo109628;rank=1 scaffold_178 . CDS 43756 43845 . + 0 ID=Physo109628;Parent=Physo109628;rank=2 scaffold_178 . exon 43756 43845 . + . ID=Physo109628.2;Parent=Physo109628;constitutive=1;rank=2 scaffold_178 . CDS 43926 44284 . + 0 ID=Physo109628;Parent=Physo109628;rank=3 scaffold_178 . exon 43926 44284 . + . ID=Physo109628.3;Parent=Physo109628;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_178 . CDS 44357 44518 . + 0 ID=Physo109628;Parent=Physo109628;rank=4 scaffold_178 . exon 44357 44518 . + . ID=Physo109628.4;Parent=Physo109628;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_178 . CDS 44594 44786 . + 0 ID=Physo109628;Parent=Physo109628;rank=5 scaffold_178 . exon 44594 44786 . + . ID=Physo109628.5;Parent=Physo109628;constitutive=1;ensembl_phase=2;rank=5 scaffold_178 ensembl protein_coding_gene 37293 39860 . + . ID=Physo144300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780015;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 37293 39860 . + . ID=Physo144300;Parent=Physo144300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 37293 38226 . + 0 ID=Physo144300;Parent=Physo144300;rank=1 scaffold_178 . exon 37293 38226 . + . ID=Physo144300.1;Parent=Physo144300;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_178 . CDS 38612 39396 . + 0 ID=Physo144300;Parent=Physo144300;rank=2 scaffold_178 . exon 38612 39396 . + . ID=Physo144300.2;Parent=Physo144300;constitutive=1;ensembl_phase=1;rank=2 scaffold_178 . CDS 39486 39860 . + 0 ID=Physo144300;Parent=Physo144300;rank=3 scaffold_178 . exon 39486 39860 . + . ID=Physo144300.3;Parent=Physo144300;constitutive=1;rank=3 scaffold_178 ensembl pseudogene 40735 43271 . + . ID=Physo144301;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_1780016;logic_name=jgi_physo1_1 scaffold_178 ensembl pseudogene 40735 43271 . + . ID=Physo144301;Parent=Physo144301;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_178 . exon 40735 43271 . + . ID=Physo144301.1;Parent=Physo144301;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_178 ensembl protein_coding_gene 45251 46219 . - . ID=Physo144303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780018;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 45251 46219 . - . ID=Physo144303;Parent=Physo144303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 45251 46219 . - 0 ID=Physo144303;Parent=Physo144303;rank=1 scaffold_178 . exon 45251 46219 . - . ID=Physo144303.1;Parent=Physo144303;constitutive=1;rank=1 scaffold_178 . exon 36380 36550 . - . ID=Physo158927.2;Parent=Physo158927;constitutive=1;rank=2 scaffold_178 . exon 36602 37060 . - . ID=Physo158927.1;Parent=Physo158927;constitutive=1;rank=1 scaffold_178 ensembl protein_coding_gene 51597 53528 . - . ID=Physo109629;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1780002;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 51597 53528 . - . ID=Physo109629;Parent=Physo109629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . exon 51597 52500 . - . ID=Physo109629.5;Parent=Physo109629;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_178 . CDS 51712 52500 . - 0 ID=Physo109629;Parent=Physo109629;rank=5 scaffold_178 . CDS 52571 52743 . - 0 ID=Physo109629;Parent=Physo109629;rank=4 scaffold_178 . exon 52571 52743 . - . ID=Physo109629.4;Parent=Physo109629;constitutive=1;ensembl_phase=1;rank=4 scaffold_178 . CDS 52817 52962 . - 0 ID=Physo109629;Parent=Physo109629;rank=3 scaffold_178 . exon 52817 52962 . - . ID=Physo109629.3;Parent=Physo109629;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_178 . CDS 53066 53388 . - 0 ID=Physo109629;Parent=Physo109629;rank=2 scaffold_178 . exon 53066 53388 . - . ID=Physo109629.2;Parent=Physo109629;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_178 . CDS 53490 53528 . - 0 ID=Physo109629;Parent=Physo109629;rank=1 scaffold_178 . exon 53490 53528 . - . ID=Physo109629.1;Parent=Physo109629;constitutive=1;rank=1 scaffold_178 ensembl protein_coding_gene 46346 47168 . + . ID=Physo144304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780019;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 46346 47168 . + . ID=Physo144304;Parent=Physo144304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 46346 46369 . + 0 ID=Physo144304;Parent=Physo144304;rank=1 scaffold_178 . exon 46346 46369 . + . ID=Physo144304.1;Parent=Physo144304;constitutive=1;rank=1 scaffold_178 . CDS 46447 46519 . + 0 ID=Physo144304;Parent=Physo144304;rank=2 scaffold_178 . exon 46447 46519 . + . ID=Physo144304.2;Parent=Physo144304;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_178 . CDS 46592 46679 . + 0 ID=Physo144304;Parent=Physo144304;rank=3 scaffold_178 . exon 46592 46679 . + . ID=Physo144304.3;Parent=Physo144304;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_178 . CDS 46749 46880 . + 0 ID=Physo144304;Parent=Physo144304;rank=4 scaffold_178 . exon 46749 46880 . + . ID=Physo144304.4;Parent=Physo144304;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_178 . CDS 46946 47168 . + 0 ID=Physo144304;Parent=Physo144304;rank=5 scaffold_178 . exon 46946 47168 . + . ID=Physo144304.5;Parent=Physo144304;constitutive=1;ensembl_phase=2;rank=5 scaffold_178 ensembl protein_coding_gene 47340 49133 . - . ID=Physo144305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780020;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 47340 49133 . - . ID=Physo144305;Parent=Physo144305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 47340 49133 . - 0 ID=Physo144305;Parent=Physo144305;rank=1 scaffold_178 . exon 47340 49133 . - . ID=Physo144305.1;Parent=Physo144305;constitutive=1;rank=1 scaffold_178 ensembl protein_coding_gene 50420 51205 . - . ID=Physo144306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780021;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 50420 51205 . - . ID=Physo144306;Parent=Physo144306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 50420 51205 . - 0 ID=Physo144306;Parent=Physo144306;rank=1 scaffold_178 . exon 50420 51205 . - . ID=Physo144306.1;Parent=Physo144306;constitutive=1;rank=1 scaffold_178 ensembl protein_coding_gene 53691 56266 . - . ID=Physo144308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780023;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 53691 56266 . - . ID=Physo144308;Parent=Physo144308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 53691 55398 . - 0 ID=Physo144308;Parent=Physo144308;rank=3 scaffold_178 . exon 53691 55398 . - . ID=Physo144308.3;Parent=Physo144308;constitutive=1;ensembl_phase=2;rank=3 scaffold_178 . CDS 55469 55637 . - 0 ID=Physo144308;Parent=Physo144308;rank=2 scaffold_178 . CDS 55720 56266 . - 0 ID=Physo144308;Parent=Physo144308;rank=1 scaffold_178 . biological_region 56107 56111 0.999 - . logic_name=eponine scaffold_178 . biological_region 56159 56161 0.999 + . logic_name=eponine scaffold_178 . repeat_region 56272 56324 . ? . description=dust scaffold_178 . repeat_region 58196 58203 . ? . description=dust scaffold_178 . biological_region 62083 62087 0.999 - . logic_name=eponine scaffold_178 . biological_region 62121 62122 0.999 - . logic_name=eponine scaffold_178 . biological_region 63066 63073 0.999 + . logic_name=eponine scaffold_178 . biological_region 63069 63075 0.999 - . logic_name=eponine scaffold_178 . biological_region 63126 63133 0.999 + . logic_name=eponine scaffold_178 . biological_region 63151 63155 0.999 - . logic_name=eponine scaffold_178 . biological_region 63205 63208 0.999 + . logic_name=eponine scaffold_178 . exon 55469 55637 . - . ID=Physo144308.2;Parent=Physo144308;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_178 . exon 55720 56266 . - . ID=Physo144308.1;Parent=Physo144308;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_178 ensembl protein_coding_gene 59308 61725 . - . ID=Physo144309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780024;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 59308 61725 . - . ID=Physo144309;Parent=Physo144309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 59308 61725 . - 0 ID=Physo144309;Parent=Physo144309;rank=1 scaffold_178 . exon 59308 61725 . - . ID=Physo144309.1;Parent=Physo144309;constitutive=1;rank=1 scaffold_178 . repeat_region 64939 64968 . ? . description=trf scaffold_178 . repeat_region 67869 68187 . ? . description=trf scaffold_178 . repeat_region 67869 68232 . ? . description=trf scaffold_178 . repeat_region 67869 68232 . ? . description=trf scaffold_178 . repeat_region 67875 68230 . + . description=(CGA)n scaffold_178 . repeat_region 67877 68232 . ? . description=trf scaffold_178 . repeat_region 68227 68962 . ? . description=trf scaffold_178 . repeat_region 68967 69112 . ? . description=trf scaffold_178 ensembl protein_coding_gene 63603 65466 . + . ID=Physo144310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780025;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 63603 65466 . + . ID=Physo144310;Parent=Physo144310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 63603 65321 . + 0 ID=Physo144310;Parent=Physo144310;rank=1 scaffold_178 . exon 63603 65466 . + . ID=Physo144310.1;Parent=Physo144310;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_178 ensembl protein_coding_gene 67043 69454 . + . ID=Physo144311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780026;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 67043 69454 . + . ID=Physo144311;Parent=Physo144311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 67043 67843 . + 0 ID=Physo144311;Parent=Physo144311;rank=1 scaffold_178 . exon 67043 67843 . + . ID=Physo144311.1;Parent=Physo144311;constitutive=1;rank=1 scaffold_178 . CDS 68220 68585 . + 0 ID=Physo144311;Parent=Physo144311;rank=2 scaffold_178 . exon 68220 68585 . + . ID=Physo144311.2;Parent=Physo144311;constitutive=1;rank=2 scaffold_178 . CDS 68627 69454 . + 0 ID=Physo144311;Parent=Physo144311;rank=3 scaffold_178 . exon 68627 69454 . + . ID=Physo144311.3;Parent=Physo144311;constitutive=1;rank=3 scaffold_178 ensembl protein_coding_gene 72316 74209 . + . ID=Physo144312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1780027;logic_name=jgi_physo1_1 scaffold_178 ensembl transcript 72316 74209 . + . ID=Physo144312;Parent=Physo144312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_178 . CDS 72316 72468 . + 0 ID=Physo144312;Parent=Physo144312;rank=1 scaffold_178 . exon 72316 72468 . + . ID=Physo144312.1;Parent=Physo144312;constitutive=1;rank=1 scaffold_178 . CDS 72723 73190 . + 0 ID=Physo144312;Parent=Physo144312;rank=2 scaffold_178 . CDS 73217 73459 . + 0 ID=Physo144312;Parent=Physo144312;rank=3 scaffold_178 . CDS 73501 73638 . + 0 ID=Physo144312;Parent=Physo144312;rank=4 scaffold_178 . CDS 73709 74209 . + 0 ID=Physo144312;Parent=Physo144312;rank=5 scaffold_178 . repeat_region 72621 72670 . ? . description=dust scaffold_178 . biological_region 72939 72941 0.999 - . logic_name=eponine scaffold_178 . biological_region 73418 73419 0.999 - . logic_name=eponine scaffold_178 . biological_region 73744 73748 0.999 - . logic_name=eponine scaffold_178 . biological_region 73955 73956 0.999 - . logic_name=eponine scaffold_178 . biological_region 74015 74017 0.999 - . logic_name=eponine scaffold_178 . biological_region 74076 74077 0.999 - . logic_name=eponine scaffold_178 . biological_region 74135 74135 0.999 - . logic_name=eponine scaffold_178 . biological_region 74194 74196 0.999 - . logic_name=eponine scaffold_178 . biological_region 74254 74256 0.999 - . logic_name=eponine scaffold_178 . repeat_region 74452 79766 . ? . description=dust scaffold_178 . exon 72723 73190 . + . ID=Physo144312.2;Parent=Physo144312;constitutive=1;rank=2 scaffold_178 . exon 73217 73459 . + . ID=Physo144312.3;Parent=Physo144312;constitutive=1;rank=3 scaffold_178 . exon 73501 73638 . + . ID=Physo144312.4;Parent=Physo144312;constitutive=1;rank=4 scaffold_178 . exon 73709 74209 . + . ID=Physo144312.5;Parent=Physo144312;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_161 1 83439 scaffold_161 . repeat_region 2852 2859 . ? . description=dust scaffold_161 . biological_region 6461 6461 0.999 + . logic_name=eponine scaffold_161 . biological_region 7025 7030 0.999 + . logic_name=eponine scaffold_161 ensembl protein_coding_gene 5202 7317 . - . ID=Physo143983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610001;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 5202 7317 . - . ID=Physo143983;Parent=Physo143983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 5202 5368 . - 0 ID=Physo143983;Parent=Physo143983;rank=3 scaffold_161 . exon 5202 5368 . - . ID=Physo143983.3;Parent=Physo143983;constitutive=1;ensembl_phase=1;rank=3 scaffold_161 . CDS 5699 7079 . - 0 ID=Physo143983;Parent=Physo143983;rank=2 scaffold_161 . exon 5699 7079 . - . ID=Physo143983.2;Parent=Physo143983;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_161 . CDS 7135 7317 . - 0 ID=Physo143983;Parent=Physo143983;rank=1 scaffold_161 . exon 7135 7317 . - . ID=Physo143983.1;Parent=Physo143983;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 9626 11955 . - . ID=Physo143984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610002;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 9626 11955 . - . ID=Physo143984;Parent=Physo143984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 9626 10234 . - 0 ID=Physo143984;Parent=Physo143984;rank=4 scaffold_161 . exon 9626 10234 . - . ID=Physo143984.4;Parent=Physo143984;constitutive=1;rank=4 scaffold_161 . CDS 10341 10790 . - 0 ID=Physo143984;Parent=Physo143984;rank=3 scaffold_161 . exon 10341 10790 . - . ID=Physo143984.3;Parent=Physo143984;constitutive=1;rank=3 scaffold_161 . CDS 10820 11018 . - 0 ID=Physo143984;Parent=Physo143984;rank=2 scaffold_161 . exon 10820 11018 . - . ID=Physo143984.2;Parent=Physo143984;constitutive=1;ensembl_phase=2;rank=2 scaffold_161 . CDS 11087 11955 . - 0 ID=Physo143984;Parent=Physo143984;rank=1 scaffold_161 . exon 11087 11955 . - . ID=Physo143984.1;Parent=Physo143984;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_161 ensembl protein_coding_gene 13439 20547 . + . ID=Physo143985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610003;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 13439 20547 . + . ID=Physo143985;Parent=Physo143985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . exon 13439 13954 . + . ID=Physo143985.1;Parent=Physo143985;constitutive=1;ensembl_phase=-1;rank=1 scaffold_161 . CDS 13544 13954 . + 0 ID=Physo143985;Parent=Physo143985;rank=1 scaffold_161 . CDS 14096 14156 . + 0 ID=Physo143985;Parent=Physo143985;rank=2 scaffold_161 . exon 14096 14156 . + . ID=Physo143985.2;Parent=Physo143985;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_161 . CDS 14292 14451 . + 0 ID=Physo143985;Parent=Physo143985;rank=3 scaffold_161 . exon 14292 14451 . + . ID=Physo143985.3;Parent=Physo143985;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_161 . CDS 14709 15338 . + 0 ID=Physo143985;Parent=Physo143985;rank=4 scaffold_161 . exon 14709 15338 . + . ID=Physo143985.4;Parent=Physo143985;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_161 . CDS 15388 15535 . + 0 ID=Physo143985;Parent=Physo143985;rank=5 scaffold_161 . exon 15388 15535 . + . ID=Physo143985.5;Parent=Physo143985;constitutive=1;ensembl_phase=2;rank=5 scaffold_161 . CDS 15599 15693 . + 0 ID=Physo143985;Parent=Physo143985;rank=6 scaffold_161 . exon 15599 15693 . + . ID=Physo143985.6;Parent=Physo143985;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_161 . CDS 15814 16612 . + 0 ID=Physo143985;Parent=Physo143985;rank=7 scaffold_161 . exon 15814 16612 . + . ID=Physo143985.7;Parent=Physo143985;constitutive=1;ensembl_phase=2;rank=7 scaffold_161 . CDS 16637 16842 . + 0 ID=Physo143985;Parent=Physo143985;rank=8 scaffold_161 . exon 16637 16842 . + . ID=Physo143985.8;Parent=Physo143985;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_161 . CDS 16994 17104 . + 0 ID=Physo143985;Parent=Physo143985;rank=9 scaffold_161 . exon 16994 17104 . + . ID=Physo143985.9;Parent=Physo143985;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_161 . CDS 17295 17589 . + 0 ID=Physo143985;Parent=Physo143985;rank=10 scaffold_161 . exon 17295 17589 . + . ID=Physo143985.10;Parent=Physo143985;constitutive=1;ensembl_phase=2;rank=10 scaffold_161 . CDS 17758 18678 . + 0 ID=Physo143985;Parent=Physo143985;rank=11 scaffold_161 . exon 17758 18678 . + . ID=Physo143985.11;Parent=Physo143985;constitutive=1;rank=11 scaffold_161 . CDS 18706 19611 . + 0 ID=Physo143985;Parent=Physo143985;rank=12 scaffold_161 . CDS 19640 20140 . + 0 ID=Physo143985;Parent=Physo143985;rank=13 scaffold_161 . biological_region 20856 20859 0.999 - . logic_name=eponine scaffold_161 . biological_region 23803 23804 0.999 - . logic_name=eponine scaffold_161 . biological_region 24681 24683 0.999 + . logic_name=eponine scaffold_161 . repeat_region 26071 26103 . ? . description=trf scaffold_161 . biological_region 26200 26204 0.999 + . logic_name=eponine scaffold_161 . biological_region 27704 27709 0.999 - . logic_name=eponine scaffold_161 . exon 18706 19611 . + . ID=Physo143985.12;Parent=Physo143985;constitutive=1;rank=12 scaffold_161 . exon 19640 20547 . + . ID=Physo143985.13;Parent=Physo143985;constitutive=1;ensembl_end_phase=-1;rank=13 scaffold_161 ensembl protein_coding_gene 24650 25363 . - . ID=Physo143986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610004;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 24650 25363 . - . ID=Physo143986;Parent=Physo143986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 24650 25046 . - 0 ID=Physo143986;Parent=Physo143986;rank=2 scaffold_161 . exon 24650 25046 . - . ID=Physo143986.2;Parent=Physo143986;constitutive=1;ensembl_phase=2;rank=2 scaffold_161 . CDS 25152 25363 . - 0 ID=Physo143986;Parent=Physo143986;rank=1 scaffold_161 . exon 25152 25363 . - . ID=Physo143986.1;Parent=Physo143986;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_161 ensembl protein_coding_gene 27289 28117 . + . ID=Physo143987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610005;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 27289 28117 . + . ID=Physo143987;Parent=Physo143987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . exon 27289 28117 . + . ID=Physo143987.1;Parent=Physo143987;constitutive=1;ensembl_phase=-1;rank=1 scaffold_161 . CDS 27578 28117 . + 0 ID=Physo143987;Parent=Physo143987;rank=1 scaffold_161 ensembl protein_coding_gene 31433 32575 . - . ID=Physo109599;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1610001;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 31433 32575 . - . ID=Physo109599;Parent=Physo109599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . exon 31433 31493 . - . ID=Physo109599.3;Parent=Physo109599;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_161 . CDS 31459 31493 . - 0 ID=Physo109599;Parent=Physo109599;rank=3 scaffold_161 . CDS 31533 32118 . - 0 ID=Physo109599;Parent=Physo109599;rank=2 scaffold_161 . exon 31533 32118 . - . ID=Physo109599.2;Parent=Physo109599;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_161 . CDS 32187 32573 . - 0 ID=Physo109599;Parent=Physo109599;rank=1 scaffold_161 . exon 32187 32575 . - . ID=Physo109599.1;Parent=Physo109599;constitutive=1;ensembl_phase=-1;rank=1 scaffold_161 ensembl protein_coding_gene 28376 31289 . - . ID=Physo143988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610006;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 28376 31289 . - . ID=Physo143988;Parent=Physo143988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 28376 30759 . - 0 ID=Physo143988;Parent=Physo143988;rank=2 scaffold_161 . exon 28376 30759 . - . ID=Physo143988.2;Parent=Physo143988;constitutive=1;ensembl_phase=1;rank=2 scaffold_161 . CDS 30833 31289 . - 0 ID=Physo143988;Parent=Physo143988;rank=1 scaffold_161 . exon 30833 31289 . - . ID=Physo143988.1;Parent=Physo143988;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_161 ensembl protein_coding_gene 36707 37954 . - . ID=Physo143990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610008;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 36707 37954 . - . ID=Physo143990;Parent=Physo143990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 36707 37954 . - 0 ID=Physo143990;Parent=Physo143990;rank=1 scaffold_161 . exon 36707 37954 . - . ID=Physo143990.1;Parent=Physo143990;constitutive=1;rank=1 scaffold_161 . repeat_region 38484 38501 . ? . description=dust scaffold_161 . repeat_region 43341 43389 . ? . description=trf scaffold_161 . repeat_region 43817 43836 . ? . description=trf scaffold_161 ensembl protein_coding_gene 38564 40397 . - . ID=Physo143991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610009;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 38564 40397 . - . ID=Physo143991;Parent=Physo143991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 38564 40327 . - 0 ID=Physo143991;Parent=Physo143991;rank=1 scaffold_161 . exon 38564 40327 . - . ID=Physo143991.2;Parent=Physo143991;constitutive=1;rank=2 scaffold_161 . exon 40382 40397 . - . ID=Physo143991.1;Parent=Physo143991;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_161 ensembl protein_coding_gene 43070 43750 . - . ID=Physo143992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610010;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 43070 43750 . - . ID=Physo143992;Parent=Physo143992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 43070 43750 . - 0 ID=Physo143992;Parent=Physo143992;rank=1 scaffold_161 . exon 43070 43750 . - . ID=Physo143992.1;Parent=Physo143992;constitutive=1;rank=1 scaffold_161 . biological_region 55316 55318 0.999 - . logic_name=eponine scaffold_161 ensembl protein_coding_gene 47014 47932 . - . ID=Physo143993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610011;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 47014 47932 . - . ID=Physo143993;Parent=Physo143993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 47014 47759 . - 0 ID=Physo143993;Parent=Physo143993;rank=2 scaffold_161 . exon 47014 47759 . - . ID=Physo143993.2;Parent=Physo143993;constitutive=1;ensembl_phase=1;rank=2 scaffold_161 . CDS 47872 47932 . - 0 ID=Physo143993;Parent=Physo143993;rank=1 scaffold_161 . exon 47872 47932 . - . ID=Physo143993.1;Parent=Physo143993;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_161 ensembl protein_coding_gene 50472 52162 . - . ID=Physo143994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610012;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 50472 52162 . - . ID=Physo143994;Parent=Physo143994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 50472 50898 . - 0 ID=Physo143994;Parent=Physo143994;rank=4 scaffold_161 . exon 50472 50898 . - . ID=Physo143994.4;Parent=Physo143994;constitutive=1;ensembl_phase=2;rank=4 scaffold_161 . CDS 50976 51777 . - 0 ID=Physo143994;Parent=Physo143994;rank=3 scaffold_161 . exon 50976 51777 . - . ID=Physo143994.3;Parent=Physo143994;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_161 . CDS 51839 51861 . - 0 ID=Physo143994;Parent=Physo143994;rank=2 scaffold_161 . exon 51839 51861 . - . ID=Physo143994.2;Parent=Physo143994;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_161 . CDS 51948 52162 . - 0 ID=Physo143994;Parent=Physo143994;rank=1 scaffold_161 . exon 51948 52162 . - . ID=Physo143994.1;Parent=Physo143994;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_161 ensembl protein_coding_gene 52951 55479 . - . ID=Physo143995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610013;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 52951 55479 . - . ID=Physo143995;Parent=Physo143995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 52951 55479 . - 0 ID=Physo143995;Parent=Physo143995;rank=1 scaffold_161 . exon 52951 55479 . - . ID=Physo143995.1;Parent=Physo143995;constitutive=1;rank=1 scaffold_161 . repeat_region 57274 57365 . ? . description=trf scaffold_161 . repeat_region 57274 57368 . ? . description=trf scaffold_161 . repeat_region 57286 57365 . ? . description=trf scaffold_161 . repeat_region 58501 58528 . ? . description=trf scaffold_161 . repeat_region 59281 59289 . ? . description=dust scaffold_161 . repeat_region 60233 60320 . ? . description=dust scaffold_161 ensembl protein_coding_gene 60017 62046 . + . ID=Physo143996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610014;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 60017 62046 . + . ID=Physo143996;Parent=Physo143996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 60017 60381 . + 0 ID=Physo143996;Parent=Physo143996;rank=1 scaffold_161 . exon 60017 60381 . + . ID=Physo143996.1;Parent=Physo143996;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_161 . CDS 60526 60943 . + 0 ID=Physo143996;Parent=Physo143996;rank=2 scaffold_161 . exon 60526 60943 . + . ID=Physo143996.2;Parent=Physo143996;constitutive=1;ensembl_phase=2;rank=2 scaffold_161 . CDS 61018 61602 . + 0 ID=Physo143996;Parent=Physo143996;rank=3 scaffold_161 . exon 61018 61602 . + . ID=Physo143996.3;Parent=Physo143996;constitutive=1;rank=3 scaffold_161 . CDS 61647 61714 . + 0 ID=Physo143996;Parent=Physo143996;rank=4 scaffold_161 . exon 61647 61714 . + . ID=Physo143996.4;Parent=Physo143996;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_161 . CDS 61824 62046 . + 0 ID=Physo143996;Parent=Physo143996;rank=5 scaffold_161 . exon 61824 62046 . + . ID=Physo143996.5;Parent=Physo143996;constitutive=1;ensembl_phase=2;rank=5 scaffold_161 . biological_region 66394 66397 0.999 - . logic_name=eponine scaffold_161 . biological_region 72619 72620 0.999 + . logic_name=eponine scaffold_161 . biological_region 72674 72677 0.999 - . logic_name=eponine scaffold_161 . biological_region 72742 72742 0.999 - . logic_name=eponine scaffold_161 ensembl protein_coding_gene 65318 66462 . + . ID=Physo143997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610015;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 65318 66462 . + . ID=Physo143997;Parent=Physo143997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 65318 65709 . + 0 ID=Physo143997;Parent=Physo143997;rank=1 scaffold_161 . exon 65318 65709 . + . ID=Physo143997.1;Parent=Physo143997;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_161 . CDS 65761 65785 . + 0 ID=Physo143997;Parent=Physo143997;rank=2 scaffold_161 . exon 65761 65785 . + . ID=Physo143997.2;Parent=Physo143997;constitutive=1;ensembl_phase=2;rank=2 scaffold_161 . CDS 65818 66462 . + 0 ID=Physo143997;Parent=Physo143997;rank=3 scaffold_161 . exon 65818 66462 . + . ID=Physo143997.3;Parent=Physo143997;constitutive=1;rank=3 scaffold_161 ensembl protein_coding_gene 67118 68053 . - . ID=Physo143998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610016;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 67118 68053 . - . ID=Physo143998;Parent=Physo143998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 67118 68053 . - 0 ID=Physo143998;Parent=Physo143998;rank=1 scaffold_161 . exon 67118 68053 . - . ID=Physo143998.1;Parent=Physo143998;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 72244 73335 . - . ID=Physo143999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610017;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 72244 73335 . - . ID=Physo143999;Parent=Physo143999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 72244 73335 . - 0 ID=Physo143999;Parent=Physo143999;rank=1 scaffold_161 . exon 72244 73335 . - . ID=Physo143999.1;Parent=Physo143999;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 73883 75189 . - . ID=Physo144000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610018;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 73883 75189 . - . ID=Physo144000;Parent=Physo144000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 73883 73999 . - 0 ID=Physo144000;Parent=Physo144000;rank=2 scaffold_161 . exon 73883 73999 . - . ID=Physo144000.2;Parent=Physo144000;constitutive=1;rank=2 scaffold_161 . CDS 74053 75189 . - 0 ID=Physo144000;Parent=Physo144000;rank=1 scaffold_161 . exon 74053 75189 . - . ID=Physo144000.1;Parent=Physo144000;constitutive=1;rank=1 scaffold_161 . repeat_region 74557 74576 . ? . description=trf scaffold_161 . repeat_region 77686 77709 . ? . description=trf scaffold_161 ensembl protein_coding_gene 75802 76769 . - . ID=Physo144001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610019;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 75802 76769 . - . ID=Physo144001;Parent=Physo144001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 75802 76006 . - 0 ID=Physo144001;Parent=Physo144001;rank=2 scaffold_161 . exon 75802 76006 . - . ID=Physo144001.2;Parent=Physo144001;constitutive=1;ensembl_phase=2;rank=2 scaffold_161 . CDS 76077 76648 . - 0 ID=Physo144001;Parent=Physo144001;rank=1 scaffold_161 . exon 76077 76769 . - . ID=Physo144001.1;Parent=Physo144001;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_161 ensembl protein_coding_gene 82522 83279 . - . ID=Physo144003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1610021;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 82522 83279 . - . ID=Physo144003;Parent=Physo144003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 82522 82644 . - 0 ID=Physo144003;Parent=Physo144003;rank=2 scaffold_161 . exon 82522 82644 . - . ID=Physo144003.2;Parent=Physo144003;constitutive=1;rank=2 scaffold_161 . CDS 82731 83279 . - 0 ID=Physo144003;Parent=Physo144003;rank=1 scaffold_161 . exon 82731 83279 . - . ID=Physo144003.1;Parent=Physo144003;constitutive=1;rank=1 scaffold_161 ensembl protein_coding_gene 79941 81377 . - . ID=Physo158856;biotype=protein_coding;external_name=C_scaffold_161000002;logic_name=jgi_physo1_1 scaffold_161 ensembl transcript 79941 81377 . - . ID=Physo158856;Parent=Physo158856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_161 . CDS 79941 80675 . - 0 ID=Physo158856;Parent=Physo158856;rank=3 scaffold_161 . exon 79941 80675 . - . ID=Physo158856.3;Parent=Physo158856;constitutive=1;rank=3 scaffold_161 . CDS 80697 81030 . - 0 ID=Physo158856;Parent=Physo158856;rank=2 scaffold_161 . exon 80697 81030 . - . ID=Physo158856.2;Parent=Physo158856;constitutive=1;ensembl_phase=2;rank=2 scaffold_161 . CDS 81061 81377 . - 0 ID=Physo158856;Parent=Physo158856;rank=1 scaffold_161 . exon 81061 81377 . - . ID=Physo158856.1;Parent=Physo158856;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_174 1 85444 scaffold_174 . biological_region 1865 1871 0.999 - . logic_name=eponine scaffold_174 . repeat_region 4090 4119 . ? . description=trf scaffold_174 . biological_region 4159 4165 0.999 - . logic_name=eponine scaffold_174 . biological_region 4178 4186 0.999 - . logic_name=eponine scaffold_174 . repeat_region 5772 5802 . ? . description=dust scaffold_174 . biological_region 6091 6091 0.999 - . logic_name=eponine scaffold_174 . biological_region 6145 6149 0.999 + . logic_name=eponine scaffold_174 . repeat_region 6511 6605 . ? . description=trf scaffold_174 . repeat_region 8018 8072 . ? . description=trf scaffold_174 . repeat_region 9117 9126 . ? . description=dust scaffold_174 . repeat_region 9159 9181 . ? . description=trf scaffold_174 ensembl protein_coding_gene 9319 10172 . - . ID=Physo109623;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1740001;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 9319 10172 . - . ID=Physo109623;Parent=Physo109623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . exon 9319 10172 . - . ID=Physo109623.1;Parent=Physo109623;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_174 . CDS 9375 10172 . - 0 ID=Physo109623;Parent=Physo109623;rank=1 scaffold_174 ensembl protein_coding_gene 180 1007 . - . ID=Physo144237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740001;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 180 1007 . - . ID=Physo144237;Parent=Physo144237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . exon 180 668 . - . ID=Physo144237.3;Parent=Physo144237;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_174 . CDS 182 668 . - 0 ID=Physo144237;Parent=Physo144237;rank=3 scaffold_174 . CDS 745 772 . - 0 ID=Physo144237;Parent=Physo144237;rank=2 scaffold_174 . exon 745 772 . - . ID=Physo144237.2;Parent=Physo144237;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_174 . CDS 965 1007 . - 0 ID=Physo144237;Parent=Physo144237;rank=1 scaffold_174 . exon 965 1007 . - . ID=Physo144237.1;Parent=Physo144237;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 ensembl protein_coding_gene 3502 5772 . - . ID=Physo144238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740002;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 3502 5772 . - . ID=Physo144238;Parent=Physo144238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 3502 5772 . - 0 ID=Physo144238;Parent=Physo144238;rank=1 scaffold_174 . exon 3502 5772 . - . ID=Physo144238.1;Parent=Physo144238;constitutive=1;rank=1 scaffold_174 ensembl protein_coding_gene 10907 11794 . + . ID=Physo144240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740004;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 10907 11794 . + . ID=Physo144240;Parent=Physo144240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 10907 11794 . + 0 ID=Physo144240;Parent=Physo144240;rank=1 scaffold_174 . exon 10907 11794 . + . ID=Physo144240.1;Parent=Physo144240;constitutive=1;rank=1 scaffold_174 ensembl protein_coding_gene 11998 12950 . + . ID=Physo144241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740005;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 11998 12950 . + . ID=Physo144241;Parent=Physo144241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 11998 12897 . + 0 ID=Physo144241;Parent=Physo144241;rank=1 scaffold_174 . exon 11998 12897 . + . ID=Physo144241.1;Parent=Physo144241;constitutive=1;rank=1 scaffold_174 . CDS 12930 12950 . + 0 ID=Physo144241;Parent=Physo144241;rank=2 scaffold_174 . exon 12930 12950 . + . ID=Physo144241.2;Parent=Physo144241;constitutive=1;rank=2 scaffold_174 ensembl protein_coding_gene 13900 15087 . - . ID=Physo158903;biotype=protein_coding;external_name=C_scaffold_174000003;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 13900 15087 . - . ID=Physo158903;Parent=Physo158903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 13900 14065 . - 0 ID=Physo158903;Parent=Physo158903;rank=3 scaffold_174 . exon 13900 14065 . - . ID=Physo158903.3;Parent=Physo158903;constitutive=1;ensembl_phase=2;rank=3 scaffold_174 . CDS 14120 14826 . - 0 ID=Physo158903;Parent=Physo158903;rank=2 scaffold_174 . exon 14120 14826 . - . ID=Physo158903.2;Parent=Physo158903;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_174 . CDS 14903 15085 . - 0 ID=Physo158903;Parent=Physo158903;rank=1 scaffold_174 . exon 14903 15087 . - . ID=Physo158903.1;Parent=Physo158903;constitutive=1;ensembl_phase=-1;rank=1 scaffold_174 . repeat_region 19205 19234 . ? . description=dust scaffold_174 . repeat_region 20056 20081 . ? . description=trf scaffold_174 . biological_region 20220 20225 0.999 + . logic_name=eponine scaffold_174 . biological_region 20288 20290 0.999 - . logic_name=eponine scaffold_174 . biological_region 20345 20346 0.999 + . logic_name=eponine scaffold_174 . biological_region 20913 20915 0.999 + . logic_name=eponine scaffold_174 . biological_region 23861 23862 0.999 - . logic_name=eponine scaffold_174 . biological_region 24485 24489 0.999 + . logic_name=eponine scaffold_174 . repeat_region 24883 24951 . ? . description=trf scaffold_174 . repeat_region 25841 25864 . ? . description=trf scaffold_174 . biological_region 26092 26092 0.999 + . logic_name=eponine scaffold_174 . repeat_region 26094 26157 . ? . description=dust scaffold_174 . repeat_region 26638 26694 . ? . description=dust scaffold_174 ensembl protein_coding_gene 27243 30593 . - . ID=Physo144243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740007;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 27243 30593 . - . ID=Physo144243;Parent=Physo144243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 27243 29289 . - 0 ID=Physo144243;Parent=Physo144243;rank=2 scaffold_174 . exon 27243 29289 . - . ID=Physo144243.2;Parent=Physo144243;constitutive=1;ensembl_phase=2;rank=2 scaffold_174 . CDS 29359 30593 . - 0 ID=Physo144243;Parent=Physo144243;rank=1 scaffold_174 . exon 29359 30593 . - . ID=Physo144243.1;Parent=Physo144243;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_174 ensembl protein_coding_gene 30819 33128 . + . ID=Physo158906;biotype=protein_coding;external_name=C_scaffold_174000006;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 30819 33128 . + . ID=Physo158906;Parent=Physo158906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 30819 30969 . + 0 ID=Physo158906;Parent=Physo158906;rank=1 scaffold_174 . exon 30819 30969 . + . ID=Physo158906.1;Parent=Physo158906;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 . CDS 31062 31200 . + 0 ID=Physo158906;Parent=Physo158906;rank=2 scaffold_174 . exon 31062 31200 . + . ID=Physo158906.2;Parent=Physo158906;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_174 . CDS 31330 32193 . + 0 ID=Physo158906;Parent=Physo158906;rank=3 scaffold_174 . exon 31330 32193 . + . ID=Physo158906.3;Parent=Physo158906;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_174 . CDS 32272 32399 . + 0 ID=Physo158906;Parent=Physo158906;rank=4 scaffold_174 . exon 32272 32399 . + . ID=Physo158906.4;Parent=Physo158906;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_174 . CDS 32462 32702 . + 0 ID=Physo158906;Parent=Physo158906;rank=5 scaffold_174 . exon 32462 32702 . + . ID=Physo158906.5;Parent=Physo158906;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_174 . CDS 32773 32988 . + 0 ID=Physo158906;Parent=Physo158906;rank=6 scaffold_174 . exon 32773 32988 . + . ID=Physo158906.6;Parent=Physo158906;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_174 . CDS 33077 33128 . + 0 ID=Physo158906;Parent=Physo158906;rank=7 scaffold_174 . exon 33077 33128 . + . ID=Physo158906.7;Parent=Physo158906;constitutive=1;ensembl_phase=2;rank=7 scaffold_174 ensembl protein_coding_gene 33459 37448 . - . ID=Physo158909;biotype=protein_coding;external_name=C_scaffold_174000009;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 33459 37448 . - . ID=Physo158909;Parent=Physo158909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 33459 33519 . - 0 ID=Physo158909;Parent=Physo158909;rank=8 scaffold_174 . exon 33459 33519 . - . ID=Physo158909.8;Parent=Physo158909;constitutive=1;ensembl_phase=2;rank=8 scaffold_174 . CDS 33545 33697 . - 0 ID=Physo158909;Parent=Physo158909;rank=7 scaffold_174 . exon 33545 33697 . - . ID=Physo158909.7;Parent=Physo158909;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_174 . CDS 33784 34280 . - 0 ID=Physo158909;Parent=Physo158909;rank=6 scaffold_174 . exon 33784 34280 . - . ID=Physo158909.6;Parent=Physo158909;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_174 . CDS 34419 34925 . - 0 ID=Physo158909;Parent=Physo158909;rank=5 scaffold_174 . exon 34419 34925 . - . ID=Physo158909.5;Parent=Physo158909;constitutive=1;rank=5 scaffold_174 . CDS 35022 35209 . - 0 ID=Physo158909;Parent=Physo158909;rank=4 scaffold_174 . exon 35022 35209 . - . ID=Physo158909.4;Parent=Physo158909;constitutive=1;ensembl_phase=1;rank=4 scaffold_174 . CDS 35288 35496 . - 0 ID=Physo158909;Parent=Physo158909;rank=3 scaffold_174 . exon 35288 35496 . - . ID=Physo158909.3;Parent=Physo158909;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_174 . CDS 35788 35973 . - 0 ID=Physo158909;Parent=Physo158909;rank=2 scaffold_174 . exon 35788 35973 . - . ID=Physo158909.2;Parent=Physo158909;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_174 . CDS 36169 37448 . - 0 ID=Physo158909;Parent=Physo158909;rank=1 scaffold_174 . exon 36169 37448 . - . ID=Physo158909.1;Parent=Physo158909;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_174 . biological_region 38088 38091 0.999 + . logic_name=eponine scaffold_174 . biological_region 40571 40571 0.999 + . logic_name=eponine scaffold_174 . biological_region 42841 42844 0.999 - . logic_name=eponine scaffold_174 . biological_region 43944 43944 0.999 - . logic_name=eponine scaffold_174 . biological_region 44066 44068 0.999 - . logic_name=eponine scaffold_174 . biological_region 44444 44444 0.999 + . logic_name=eponine scaffold_174 . biological_region 44464 44472 0.999 + . logic_name=eponine scaffold_174 . biological_region 44573 44576 0.999 - . logic_name=eponine scaffold_174 . biological_region 44945 44951 0.999 + . logic_name=eponine scaffold_174 . biological_region 44989 44991 0.999 - . logic_name=eponine scaffold_174 . biological_region 45389 45389 0.999 + . logic_name=eponine scaffold_174 . biological_region 45450 45454 0.999 + . logic_name=eponine scaffold_174 . biological_region 45667 45668 0.999 + . logic_name=eponine scaffold_174 . biological_region 45714 45716 0.999 + . logic_name=eponine scaffold_174 ensembl protein_coding_gene 38356 40810 . + . ID=Physo144246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740010;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 38356 40810 . + . ID=Physo144246;Parent=Physo144246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 38356 40380 . + 0 ID=Physo144246;Parent=Physo144246;rank=1 scaffold_174 . exon 38356 40380 . + . ID=Physo144246.1;Parent=Physo144246;constitutive=1;rank=1 scaffold_174 . CDS 40444 40694 . + 0 ID=Physo144246;Parent=Physo144246;rank=2 scaffold_174 . exon 40444 40694 . + . ID=Physo144246.2;Parent=Physo144246;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_174 . CDS 40729 40810 . + 0 ID=Physo144246;Parent=Physo144246;rank=3 scaffold_174 . exon 40729 40810 . + . ID=Physo144246.3;Parent=Physo144246;constitutive=1;ensembl_phase=2;rank=3 scaffold_174 ensembl protein_coding_gene 41299 43218 . - . ID=Physo144247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740011;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 41299 43218 . - . ID=Physo144247;Parent=Physo144247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 41299 43218 . - 0 ID=Physo144247;Parent=Physo144247;rank=1 scaffold_174 . exon 41299 43218 . - . ID=Physo144247.1;Parent=Physo144247;constitutive=1;rank=1 scaffold_174 ensembl protein_coding_gene 43824 46007 . - . ID=Physo144248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740012;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 43824 46007 . - . ID=Physo144248;Parent=Physo144248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 43824 46007 . - 0 ID=Physo144248;Parent=Physo144248;rank=1 scaffold_174 . exon 43824 46007 . - . ID=Physo144248.1;Parent=Physo144248;constitutive=1;rank=1 scaffold_174 ensembl protein_coding_gene 46434 48005 . - . ID=Physo144249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740013;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 46434 48005 . - . ID=Physo144249;Parent=Physo144249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 46434 48005 . - 0 ID=Physo144249;Parent=Physo144249;rank=1 scaffold_174 . exon 46434 48005 . - . ID=Physo144249.1;Parent=Physo144249;constitutive=1;rank=1 scaffold_174 . repeat_region 51878 51900 . ? . description=trf scaffold_174 . repeat_region 52402 52424 . ? . description=trf scaffold_174 . repeat_region 54718 54741 . ? . description=trf scaffold_174 ensembl protein_coding_gene 50003 51915 . - . ID=Physo144250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740014;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 50003 51915 . - . ID=Physo144250;Parent=Physo144250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 50003 50052 . - 0 ID=Physo144250;Parent=Physo144250;rank=4 scaffold_174 . exon 50003 50052 . - . ID=Physo144250.4;Parent=Physo144250;constitutive=1;ensembl_phase=1;rank=4 scaffold_174 . CDS 50198 50280 . - 0 ID=Physo144250;Parent=Physo144250;rank=3 scaffold_174 . exon 50198 50280 . - . ID=Physo144250.3;Parent=Physo144250;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_174 . CDS 50331 51624 . - 0 ID=Physo144250;Parent=Physo144250;rank=2 scaffold_174 . exon 50331 51624 . - . ID=Physo144250.2;Parent=Physo144250;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_174 . CDS 51645 51915 . - 0 ID=Physo144250;Parent=Physo144250;rank=1 scaffold_174 . exon 51645 51915 . - . ID=Physo144250.1;Parent=Physo144250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 ensembl protein_coding_gene 52445 54275 . + . ID=Physo144251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740015;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 52445 54275 . + . ID=Physo144251;Parent=Physo144251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 52445 52577 . + 0 ID=Physo144251;Parent=Physo144251;rank=1 scaffold_174 . exon 52445 52577 . + . ID=Physo144251.1;Parent=Physo144251;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 . CDS 52666 53971 . + 0 ID=Physo144251;Parent=Physo144251;rank=2 scaffold_174 . exon 52666 53971 . + . ID=Physo144251.2;Parent=Physo144251;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_174 . CDS 54022 54104 . + 0 ID=Physo144251;Parent=Physo144251;rank=3 scaffold_174 . exon 54022 54104 . + . ID=Physo144251.3;Parent=Physo144251;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_174 . CDS 54250 54275 . + 0 ID=Physo144251;Parent=Physo144251;rank=4 scaffold_174 . exon 54250 54275 . + . ID=Physo144251.4;Parent=Physo144251;constitutive=1;ensembl_phase=1;rank=4 scaffold_174 ensembl protein_coding_gene 54491 57815 . + . ID=Physo144252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740016;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 54491 57815 . + . ID=Physo144252;Parent=Physo144252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 54491 54773 . + 0 ID=Physo144252;Parent=Physo144252;rank=1 scaffold_174 . exon 54491 54773 . + . ID=Physo144252.1;Parent=Physo144252;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 . CDS 54800 54821 . + 0 ID=Physo144252;Parent=Physo144252;rank=2 scaffold_174 . exon 54800 54821 . + . ID=Physo144252.2;Parent=Physo144252;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_174 . CDS 55016 55478 . + 0 ID=Physo144252;Parent=Physo144252;rank=3 scaffold_174 . exon 55016 55478 . + . ID=Physo144252.3;Parent=Physo144252;constitutive=1;ensembl_phase=2;rank=3 scaffold_174 . CDS 55547 55615 . + 0 ID=Physo144252;Parent=Physo144252;rank=4 scaffold_174 . exon 55547 55615 . + . ID=Physo144252.4;Parent=Physo144252;constitutive=1;rank=4 scaffold_174 . CDS 55840 56697 . + 0 ID=Physo144252;Parent=Physo144252;rank=5 scaffold_174 . exon 55840 56697 . + . ID=Physo144252.5;Parent=Physo144252;constitutive=1;rank=5 scaffold_174 . CDS 56772 56906 . + 0 ID=Physo144252;Parent=Physo144252;rank=6 scaffold_174 . exon 56772 56906 . + . ID=Physo144252.6;Parent=Physo144252;constitutive=1;rank=6 scaffold_174 . CDS 56985 57422 . + 0 ID=Physo144252;Parent=Physo144252;rank=7 scaffold_174 . CDS 57485 57634 . + 0 ID=Physo144252;Parent=Physo144252;rank=8 scaffold_174 . CDS 57690 57815 . + 0 ID=Physo144252;Parent=Physo144252;rank=9 scaffold_174 . repeat_region 58394 58412 . ? . description=dust scaffold_174 . repeat_region 58450 58470 . ? . description=dust scaffold_174 . biological_region 58512 58512 0.999 + . logic_name=eponine scaffold_174 . biological_region 61171 61172 0.999 - . logic_name=eponine scaffold_174 . repeat_region 61212 61224 . ? . description=dust scaffold_174 . biological_region 61567 61574 0.999 + . logic_name=eponine scaffold_174 . biological_region 61596 61597 0.999 + . logic_name=eponine scaffold_174 . repeat_region 62372 62449 . + . description=(CGA)n scaffold_174 . biological_region 62374 62374 0.999 + . logic_name=eponine scaffold_174 . repeat_region 62399 62449 . ? . description=dust scaffold_174 . biological_region 64675 64678 0.999 + . logic_name=eponine scaffold_174 . biological_region 64741 64743 0.999 - . logic_name=eponine scaffold_174 ensembl tRNA_gene 60706 60778 . - . ID=EPrPSOG00000000085;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_174 ensembl transcript 60706 60778 . - . ID=EPrPSOT00000000085;Parent=EPrPSOG00000000085;biotype=tRNA;logic_name=ncrna_eg scaffold_174 . exon 60706 60778 . - . ID=EPrPSOE00000000085;Parent=EPrPSOT00000000085;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 ensembl protein_coding_gene 61385 64434 . + . ID=Physo109625;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1740003;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 61385 64434 . + . ID=Physo109625;Parent=Physo109625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 61385 64030 . + 0 ID=Physo109625;Parent=Physo109625;rank=1 scaffold_174 . exon 61385 64434 . + . ID=Physo109625.1;Parent=Physo109625;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_174 . exon 56985 57422 . + . ID=Physo144252.7;Parent=Physo144252;constitutive=1;rank=7 scaffold_174 . exon 57485 57634 . + . ID=Physo144252.8;Parent=Physo144252;constitutive=1;rank=8 scaffold_174 . exon 57690 57815 . + . ID=Physo144252.9;Parent=Physo144252;constitutive=1;rank=9 scaffold_174 ensembl protein_coding_gene 64505 65988 . - . ID=Physo144255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740019;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 64505 65988 . - . ID=Physo144255;Parent=Physo144255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 64505 65043 . - 0 ID=Physo144255;Parent=Physo144255;rank=2 scaffold_174 . exon 64505 65043 . - . ID=Physo144255.2;Parent=Physo144255;constitutive=1;ensembl_phase=1;rank=2 scaffold_174 . CDS 65124 65988 . - 0 ID=Physo144255;Parent=Physo144255;rank=1 scaffold_174 . exon 65124 65988 . - . ID=Physo144255.1;Parent=Physo144255;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 ensembl protein_coding_gene 66403 69423 . - . ID=Physo144256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740020;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 66403 69423 . - . ID=Physo144256;Parent=Physo144256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 66403 69423 . - 0 ID=Physo144256;Parent=Physo144256;rank=1 scaffold_174 . exon 66403 69423 . - . ID=Physo144256.1;Parent=Physo144256;constitutive=1;rank=1 scaffold_174 ensembl protein_coding_gene 58041 59252 . - . ID=Physo158912;biotype=protein_coding;external_name=C_scaffold_174000012;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 58041 59252 . - . ID=Physo158912;Parent=Physo158912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 58041 58069 . - 0 ID=Physo158912;Parent=Physo158912;rank=3 scaffold_174 . exon 58041 58069 . - . ID=Physo158912.3;Parent=Physo158912;constitutive=1;ensembl_phase=1;rank=3 scaffold_174 . CDS 58149 58374 . - 0 ID=Physo158912;Parent=Physo158912;rank=2 scaffold_174 . exon 58149 58374 . - . ID=Physo158912.2;Parent=Physo158912;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_174 . CDS 58479 59252 . - 0 ID=Physo158912;Parent=Physo158912;rank=1 scaffold_174 . exon 58479 59252 . - . ID=Physo158912.1;Parent=Physo158912;constitutive=1;rank=1 scaffold_174 . repeat_region 69366 69394 . ? . description=trf scaffold_174 . repeat_region 70620 70662 . ? . description=trf scaffold_174 . repeat_region 75287 75341 . ? . description=trf scaffold_174 ensembl protein_coding_gene 70703 71599 . + . ID=Physo144257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740021;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 70703 71599 . + . ID=Physo144257;Parent=Physo144257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 70703 71599 . + 0 ID=Physo144257;Parent=Physo144257;rank=1 scaffold_174 . exon 70703 71599 . + . ID=Physo144257.1;Parent=Physo144257;constitutive=1;rank=1 scaffold_174 ensembl protein_coding_gene 71711 72988 . - . ID=Physo144258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740022;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 71711 72988 . - . ID=Physo144258;Parent=Physo144258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 71711 72988 . - 0 ID=Physo144258;Parent=Physo144258;rank=1 scaffold_174 . exon 71711 72988 . - . ID=Physo144258.1;Parent=Physo144258;constitutive=1;rank=1 scaffold_174 . repeat_region 77581 77818 . + . description=GypsyPi-1c_LTR scaffold_174 . repeat_region 77819 79008 . + . description=GypsyPi-1c_I-int scaffold_174 . repeat_region 79021 79111 . + . description=GypsyPi-1c_I-int scaffold_174 . repeat_region 79111 79140 . ? . description=dust scaffold_174 . repeat_region 82956 82966 . ? . description=dust scaffold_174 . repeat_region 82960 83006 . + . description=GypsyPi-1c_I-int scaffold_174 . biological_region 83532 83535 0.999 + . logic_name=eponine scaffold_174 . biological_region 83553 83556 0.999 + . logic_name=eponine scaffold_174 . biological_region 83867 83869 0.999 + . logic_name=eponine scaffold_174 . biological_region 83914 83916 0.999 - . logic_name=eponine scaffold_174 . biological_region 83931 83935 0.999 - . logic_name=eponine scaffold_174 . biological_region 84121 84122 0.999 + . logic_name=eponine scaffold_174 . repeat_region 84466 85443 . + . description=GypsyPi-1c_I-int scaffold_174 ensembl protein_coding_gene 77906 79269 . + . ID=Physo144259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740023;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 77906 79269 . + . ID=Physo144259;Parent=Physo144259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 77906 77915 . + 0 ID=Physo144259;Parent=Physo144259;rank=1 scaffold_174 . exon 77906 77915 . + . ID=Physo144259.1;Parent=Physo144259;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 . CDS 78017 78211 . + 0 ID=Physo144259;Parent=Physo144259;rank=2 scaffold_174 . exon 78017 78211 . + . ID=Physo144259.2;Parent=Physo144259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_174 . CDS 78449 78850 . + 0 ID=Physo144259;Parent=Physo144259;rank=3 scaffold_174 . exon 78449 78850 . + . ID=Physo144259.3;Parent=Physo144259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_174 . CDS 79064 79269 . + 0 ID=Physo144259;Parent=Physo144259;rank=4 scaffold_174 . exon 79064 79269 . + . ID=Physo144259.4;Parent=Physo144259;constitutive=1;ensembl_phase=1;rank=4 scaffold_174 ensembl protein_coding_gene 84096 85222 . + . ID=Physo144260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1740024;logic_name=jgi_physo1_1 scaffold_174 ensembl transcript 84096 85222 . + . ID=Physo144260;Parent=Physo144260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_174 . CDS 84096 84387 . + 0 ID=Physo144260;Parent=Physo144260;rank=1 scaffold_174 . exon 84096 84387 . + . ID=Physo144260.1;Parent=Physo144260;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_174 . CDS 84423 85222 . + 0 ID=Physo144260;Parent=Physo144260;rank=2 scaffold_174 . exon 84423 85222 . + . ID=Physo144260.2;Parent=Physo144260;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_175 1 85677 scaffold_175 . repeat_region 71 102 . ? . description=trf scaffold_175 . repeat_region 430 473 . ? . description=trf scaffold_175 . repeat_region 462 502 . ? . description=trf scaffold_175 . repeat_region 783 798 . ? . description=dust scaffold_175 . biological_region 955 956 0.999 + . logic_name=eponine scaffold_175 . biological_region 984 985 0.999 - . logic_name=eponine scaffold_175 . repeat_region 1074 1084 . ? . description=dust scaffold_175 . repeat_region 1850 1882 . ? . description=trf scaffold_175 . repeat_region 1925 1932 . ? . description=dust scaffold_175 . repeat_region 4693 4701 . ? . description=dust scaffold_175 . biological_region 7908 7911 0.999 + . logic_name=eponine scaffold_175 . biological_region 9467 9471 0.999 - . logic_name=eponine scaffold_175 ensembl protein_coding_gene 9007 10503 . - . ID=Physo144261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750001;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 9007 10503 . - . ID=Physo144261;Parent=Physo144261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 9007 10503 . - 0 ID=Physo144261;Parent=Physo144261;rank=1 scaffold_175 . exon 9007 10503 . - . ID=Physo144261.1;Parent=Physo144261;constitutive=1;rank=1 scaffold_175 . repeat_region 22339 22388 . ? . description=dust scaffold_175 . repeat_region 23278 23327 . ? . description=dust scaffold_175 . biological_region 24112 24116 0.999 + . logic_name=eponine scaffold_175 . repeat_region 25606 26265 . ? . description=dust scaffold_175 . repeat_region 27182 27231 . ? . description=dust scaffold_175 ensembl protein_coding_gene 21193 22200 . - . ID=Physo109626;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1750001;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 21193 22200 . - . ID=Physo109626;Parent=Physo109626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 21193 22200 . - 0 ID=Physo109626;Parent=Physo109626;rank=1 scaffold_175 . exon 21193 22200 . - . ID=Physo109626.1;Parent=Physo109626;constitutive=1;rank=1 scaffold_175 ensembl protein_coding_gene 22934 27655 . - . ID=Physo144263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750003;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 22934 27655 . - . ID=Physo144263;Parent=Physo144263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 22934 23188 . - 0 ID=Physo144263;Parent=Physo144263;rank=4 scaffold_175 . exon 22934 23188 . - . ID=Physo144263.4;Parent=Physo144263;constitutive=1;rank=4 scaffold_175 . CDS 23358 25529 . - 0 ID=Physo144263;Parent=Physo144263;rank=3 scaffold_175 . exon 23358 25529 . - . ID=Physo144263.3;Parent=Physo144263;constitutive=1;rank=3 scaffold_175 . CDS 26268 26903 . - 0 ID=Physo144263;Parent=Physo144263;rank=2 scaffold_175 . exon 26268 26903 . - . ID=Physo144263.2;Parent=Physo144263;constitutive=1;rank=2 scaffold_175 . CDS 27239 27655 . - 0 ID=Physo144263;Parent=Physo144263;rank=1 scaffold_175 . exon 27239 27655 . - . ID=Physo144263.1;Parent=Physo144263;constitutive=1;rank=1 scaffold_175 ensembl protein_coding_gene 29000 30499 . + . ID=Physo144264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750004;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 29000 30499 . + . ID=Physo144264;Parent=Physo144264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 29000 30490 . + 0 ID=Physo144264;Parent=Physo144264;rank=1 scaffold_175 . exon 29000 30499 . + . ID=Physo144264.1;Parent=Physo144264;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_175 ensembl protein_coding_gene 30775 32253 . - . ID=Physo144265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750005;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 30775 32253 . - . ID=Physo144265;Parent=Physo144265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 30775 32253 . - 0 ID=Physo144265;Parent=Physo144265;rank=1 scaffold_175 . exon 30775 32253 . - . ID=Physo144265.1;Parent=Physo144265;constitutive=1;rank=1 scaffold_175 ensembl protein_coding_gene 34383 35858 . + . ID=Physo144266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750006;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 34383 35858 . + . ID=Physo144266;Parent=Physo144266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 34383 35858 . + 0 ID=Physo144266;Parent=Physo144266;rank=1 scaffold_175 . exon 34383 35858 . + . ID=Physo144266.1;Parent=Physo144266;constitutive=1;rank=1 scaffold_175 ensembl protein_coding_gene 37024 37838 . - . ID=Physo144267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750007;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 37024 37838 . - . ID=Physo144267;Parent=Physo144267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 37024 37082 . - 0 ID=Physo144267;Parent=Physo144267;rank=2 scaffold_175 . exon 37024 37082 . - . ID=Physo144267.2;Parent=Physo144267;constitutive=1;ensembl_phase=1;rank=2 scaffold_175 . CDS 37220 37838 . - 0 ID=Physo144267;Parent=Physo144267;rank=1 scaffold_175 . exon 37220 37838 . - . ID=Physo144267.1;Parent=Physo144267;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_175 ensembl protein_coding_gene 37949 39415 . + . ID=Physo144268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750008;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 37949 39415 . + . ID=Physo144268;Parent=Physo144268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 37949 38398 . + 0 ID=Physo144268;Parent=Physo144268;rank=1 scaffold_175 . exon 37949 38398 . + . ID=Physo144268.1;Parent=Physo144268;constitutive=1;rank=1 scaffold_175 . CDS 38789 39415 . + 0 ID=Physo144268;Parent=Physo144268;rank=2 scaffold_175 . biological_region 39083 39083 0.999 - . logic_name=eponine scaffold_175 . repeat_region 43623 43669 . ? . description=trf scaffold_175 . repeat_region 44756 44803 . ? . description=trf scaffold_175 . exon 38789 39415 . + . ID=Physo144268.2;Parent=Physo144268;constitutive=1;rank=2 scaffold_175 ensembl protein_coding_gene 39542 40996 . - . ID=Physo144269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750009;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 39542 40996 . - . ID=Physo144269;Parent=Physo144269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 39542 40996 . - 0 ID=Physo144269;Parent=Physo144269;rank=1 scaffold_175 . exon 39542 40996 . - . ID=Physo144269.1;Parent=Physo144269;constitutive=1;rank=1 scaffold_175 ensembl protein_coding_gene 46807 48028 . - . ID=Physo144270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750010;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 46807 48028 . - . ID=Physo144270;Parent=Physo144270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . exon 46807 48028 . - . ID=Physo144270.1;Parent=Physo144270;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_175 . CDS 46880 47965 . - 0 ID=Physo144270;Parent=Physo144270;rank=1 scaffold_175 . repeat_region 48029 57120 . ? . description=dust scaffold_175 . repeat_region 59641 59684 . ? . description=trf scaffold_175 . repeat_region 59993 60299 . ? . description=trf scaffold_175 . repeat_region 61645 61714 . + . description=(TACTG)n scaffold_175 . repeat_region 61655 61686 . ? . description=trf scaffold_175 . biological_region 63145 63146 0.999 + . logic_name=eponine scaffold_175 . repeat_region 66104 66398 . - . description=GypsyPi-1c_LTR scaffold_175 ensembl protein_coding_gene 61918 63538 . + . ID=Physo144271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750011;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 61918 63538 . + . ID=Physo144271;Parent=Physo144271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . exon 61918 63538 . + . ID=Physo144271.1;Parent=Physo144271;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_175 . CDS 61993 63465 . + 0 ID=Physo144271;Parent=Physo144271;rank=1 scaffold_175 . repeat_region 67450 67771 . - . description=GypsyPi-1c_I-int scaffold_175 . repeat_region 68335 69436 . - . description=GypsyPi-1c_I-int scaffold_175 . repeat_region 71863 71880 . ? . description=dust scaffold_175 . repeat_region 75795 81059 . + . description=GypsyPi-1c_I-int scaffold_175 ensembl protein_coding_gene 67636 70408 . + . ID=Physo144272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750012;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 67636 70408 . + . ID=Physo144272;Parent=Physo144272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 67636 67651 . + 0 ID=Physo144272;Parent=Physo144272;rank=1 scaffold_175 . exon 67636 67651 . + . ID=Physo144272.1;Parent=Physo144272;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_175 . CDS 67693 68172 . + 0 ID=Physo144272;Parent=Physo144272;rank=2 scaffold_175 . exon 67693 68172 . + . ID=Physo144272.2;Parent=Physo144272;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_175 . CDS 68207 69036 . + 0 ID=Physo144272;Parent=Physo144272;rank=3 scaffold_175 . exon 68207 69036 . + . ID=Physo144272.3;Parent=Physo144272;constitutive=1;ensembl_phase=1;rank=3 scaffold_175 . CDS 69103 69690 . + 0 ID=Physo144272;Parent=Physo144272;rank=4 scaffold_175 . exon 69103 69690 . + . ID=Physo144272.4;Parent=Physo144272;constitutive=1;rank=4 scaffold_175 . CDS 69956 70011 . + 0 ID=Physo144272;Parent=Physo144272;rank=5 scaffold_175 . exon 69956 70011 . + . ID=Physo144272.5;Parent=Physo144272;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_175 . CDS 70261 70408 . + 0 ID=Physo144272;Parent=Physo144272;rank=6 scaffold_175 . exon 70261 70408 . + . ID=Physo144272.6;Parent=Physo144272;constitutive=1;ensembl_phase=2;rank=6 scaffold_175 ensembl protein_coding_gene 72839 76864 . + . ID=Physo144273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750013;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 72839 76864 . + . ID=Physo144273;Parent=Physo144273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 72839 72915 . + 0 ID=Physo144273;Parent=Physo144273;rank=1 scaffold_175 . exon 72839 72915 . + . ID=Physo144273.1;Parent=Physo144273;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_175 . CDS 73002 73519 . + 0 ID=Physo144273;Parent=Physo144273;rank=2 scaffold_175 . exon 73002 73519 . + . ID=Physo144273.2;Parent=Physo144273;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_175 . CDS 73570 73988 . + 0 ID=Physo144273;Parent=Physo144273;rank=3 scaffold_175 . exon 73570 73988 . + . ID=Physo144273.3;Parent=Physo144273;constitutive=1;ensembl_phase=1;rank=3 scaffold_175 . CDS 74044 75488 . + 0 ID=Physo144273;Parent=Physo144273;rank=4 scaffold_175 . exon 74044 75488 . + . ID=Physo144273.4;Parent=Physo144273;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_175 . CDS 75838 76864 . + 0 ID=Physo144273;Parent=Physo144273;rank=5 scaffold_175 . exon 75838 76864 . + . ID=Physo144273.5;Parent=Physo144273;constitutive=1;ensembl_phase=2;rank=5 scaffold_175 . biological_region 76274 76278 0.999 + . logic_name=eponine scaffold_175 . biological_region 76293 76296 0.999 - . logic_name=eponine scaffold_175 . repeat_region 77610 77772 . ? . description=trf scaffold_175 . repeat_region 77777 77859 . ? . description=trf scaffold_175 . biological_region 80464 80469 0.999 - . logic_name=eponine scaffold_175 . biological_region 81149 81152 0.999 + . logic_name=eponine scaffold_175 . biological_region 84648 84651 0.999 + . logic_name=eponine scaffold_175 . biological_region 84761 84761 0.999 - . logic_name=eponine scaffold_175 ensembl protein_coding_gene 78498 79685 . + . ID=Physo109627;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1750002;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 78498 79685 . + . ID=Physo109627;Parent=Physo109627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 78498 79685 . + 0 ID=Physo109627;Parent=Physo109627;rank=1 scaffold_175 . exon 78498 79685 . + . ID=Physo109627.1;Parent=Physo109627;constitutive=1;rank=1 scaffold_175 ensembl protein_coding_gene 77193 78352 . + . ID=Physo144274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750014;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 77193 78352 . + . ID=Physo144274;Parent=Physo144274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 77193 78350 . + 0 ID=Physo144274;Parent=Physo144274;rank=1 scaffold_175 . exon 77193 78352 . + . ID=Physo144274.1;Parent=Physo144274;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_175 ensembl protein_coding_gene 79838 80759 . + . ID=Physo144276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750016;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 79838 80759 . + . ID=Physo144276;Parent=Physo144276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 79838 80704 . + 0 ID=Physo144276;Parent=Physo144276;rank=1 scaffold_175 . exon 79838 80704 . + . ID=Physo144276.1;Parent=Physo144276;constitutive=1;rank=1 scaffold_175 . CDS 80751 80759 . + 0 ID=Physo144276;Parent=Physo144276;rank=2 scaffold_175 . exon 80751 80759 . + . ID=Physo144276.2;Parent=Physo144276;constitutive=1;rank=2 scaffold_175 ensembl protein_coding_gene 83786 85330 . - . ID=Physo144277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1750017;logic_name=jgi_physo1_1 scaffold_175 ensembl transcript 83786 85330 . - . ID=Physo144277;Parent=Physo144277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_175 . CDS 83786 85330 . - 0 ID=Physo144277;Parent=Physo144277;rank=1 scaffold_175 . exon 83786 85330 . - . ID=Physo144277.1;Parent=Physo144277;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_173 1 85743 scaffold_173 . repeat_region 787 823 . ? . description=trf scaffold_173 . repeat_region 874 894 . ? . description=trf scaffold_173 . repeat_region 1109 1123 . ? . description=dust scaffold_173 . biological_region 1528 1531 0.999 + . logic_name=eponine scaffold_173 . repeat_region 1873 1922 . ? . description=dust scaffold_173 . biological_region 2825 2828 0.999 + . logic_name=eponine scaffold_173 . repeat_region 3124 3349 . ? . description=trf scaffold_173 . repeat_region 3279 3393 . ? . description=trf scaffold_173 . repeat_region 3308 3352 . ? . description=trf scaffold_173 . repeat_region 3308 3358 . ? . description=trf scaffold_173 . repeat_region 3430 3470 . ? . description=trf scaffold_173 . biological_region 6985 6986 0.999 - . logic_name=eponine scaffold_173 . repeat_region 8753 8793 . ? . description=trf scaffold_173 ensembl protein_coding_gene 312 662 . - . ID=Physo144211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730001;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 312 662 . - . ID=Physo144211;Parent=Physo144211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 312 662 . - 0 ID=Physo144211;Parent=Physo144211;rank=1 scaffold_173 . exon 312 662 . - . ID=Physo144211.1;Parent=Physo144211;constitutive=1;rank=1 scaffold_173 ensembl protein_coding_gene 1128 3783 . + . ID=Physo144212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730002;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 1128 3783 . + . ID=Physo144212;Parent=Physo144212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 1128 1852 . + 0 ID=Physo144212;Parent=Physo144212;rank=1 scaffold_173 . exon 1128 1852 . + . ID=Physo144212.1;Parent=Physo144212;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_173 . CDS 2138 2270 . + 0 ID=Physo144212;Parent=Physo144212;rank=2 scaffold_173 . exon 2138 2270 . + . ID=Physo144212.2;Parent=Physo144212;constitutive=1;ensembl_phase=2;rank=2 scaffold_173 . CDS 2350 3783 . + 0 ID=Physo144212;Parent=Physo144212;rank=3 scaffold_173 . exon 2350 3783 . + . ID=Physo144212.3;Parent=Physo144212;constitutive=1;rank=3 scaffold_173 ensembl protein_coding_gene 3896 6377 . - . ID=Physo144213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730003;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 3896 6377 . - . ID=Physo144213;Parent=Physo144213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . exon 3896 4125 . - . ID=Physo144213.7;Parent=Physo144213;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_173 . CDS 4009 4125 . - 0 ID=Physo144213;Parent=Physo144213;rank=7 scaffold_173 . CDS 4190 4317 . - 0 ID=Physo144213;Parent=Physo144213;rank=6 scaffold_173 . exon 4190 4317 . - . ID=Physo144213.6;Parent=Physo144213;constitutive=1;ensembl_phase=1;rank=6 scaffold_173 . CDS 4591 5062 . - 0 ID=Physo144213;Parent=Physo144213;rank=5 scaffold_173 . exon 4591 5062 . - . ID=Physo144213.5;Parent=Physo144213;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_173 . CDS 5134 5547 . - 0 ID=Physo144213;Parent=Physo144213;rank=4 scaffold_173 . exon 5134 5547 . - . ID=Physo144213.4;Parent=Physo144213;constitutive=1;rank=4 scaffold_173 . CDS 5617 5712 . - 0 ID=Physo144213;Parent=Physo144213;rank=3 scaffold_173 . exon 5617 5712 . - . ID=Physo144213.3;Parent=Physo144213;constitutive=1;rank=3 scaffold_173 . CDS 5799 5967 . - 0 ID=Physo144213;Parent=Physo144213;rank=2 scaffold_173 . exon 5799 5967 . - . ID=Physo144213.2;Parent=Physo144213;constitutive=1;ensembl_phase=2;rank=2 scaffold_173 . CDS 6044 6285 . - 0 ID=Physo144213;Parent=Physo144213;rank=1 scaffold_173 . exon 6044 6377 . - . ID=Physo144213.1;Parent=Physo144213;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_173 ensembl protein_coding_gene 6822 9403 . + . ID=Physo144214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730004;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 6822 9403 . + . ID=Physo144214;Parent=Physo144214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 6822 9163 . + 0 ID=Physo144214;Parent=Physo144214;rank=1 scaffold_173 . exon 6822 9163 . + . ID=Physo144214.1;Parent=Physo144214;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_173 . CDS 9235 9403 . + 0 ID=Physo144214;Parent=Physo144214;rank=2 scaffold_173 . exon 9235 9403 . + . ID=Physo144214.2;Parent=Physo144214;constitutive=1;ensembl_phase=2;rank=2 scaffold_173 ensembl protein_coding_gene 11929 14874 . + . ID=Physo144216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730006;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 11929 14874 . + . ID=Physo144216;Parent=Physo144216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . exon 11929 13189 . + . ID=Physo144216.1;Parent=Physo144216;constitutive=1;ensembl_phase=-1;rank=1 scaffold_173 . CDS 12047 13189 . + 0 ID=Physo144216;Parent=Physo144216;rank=1 scaffold_173 . CDS 13269 13317 . + 0 ID=Physo144216;Parent=Physo144216;rank=2 scaffold_173 . exon 13269 13317 . + . ID=Physo144216.2;Parent=Physo144216;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_173 . CDS 13426 13464 . + 0 ID=Physo144216;Parent=Physo144216;rank=3 scaffold_173 . exon 13426 13464 . + . ID=Physo144216.3;Parent=Physo144216;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_173 . CDS 13577 13674 . + 0 ID=Physo144216;Parent=Physo144216;rank=4 scaffold_173 . exon 13577 13674 . + . ID=Physo144216.4;Parent=Physo144216;constitutive=1;ensembl_phase=1;rank=4 scaffold_173 . CDS 13748 13979 . + 0 ID=Physo144216;Parent=Physo144216;rank=5 scaffold_173 . exon 13748 13979 . + . ID=Physo144216.5;Parent=Physo144216;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_173 . CDS 14055 14421 . + 0 ID=Physo144216;Parent=Physo144216;rank=6 scaffold_173 . exon 14055 14421 . + . ID=Physo144216.6;Parent=Physo144216;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_173 . CDS 14503 14710 . + 0 ID=Physo144216;Parent=Physo144216;rank=7 scaffold_173 . exon 14503 14874 . + . ID=Physo144216.7;Parent=Physo144216;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_173 ensembl protein_coding_gene 10635 11286 . - . ID=Physo158894;biotype=protein_coding;external_name=C_scaffold_173000005;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 10635 11286 . - . ID=Physo158894;Parent=Physo158894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 10635 11033 . - 0 ID=Physo158894;Parent=Physo158894;rank=2 scaffold_173 . exon 10635 11033 . - . ID=Physo158894.2;Parent=Physo158894;constitutive=1;rank=2 scaffold_173 . CDS 11107 11286 . - 0 ID=Physo158894;Parent=Physo158894;rank=1 scaffold_173 . exon 11107 11286 . - . ID=Physo158894.1;Parent=Physo158894;constitutive=1;rank=1 scaffold_173 . biological_region 19265 19269 0.999 + . logic_name=eponine scaffold_173 . biological_region 20021 20023 0.999 + . logic_name=eponine scaffold_173 . biological_region 20045 20050 0.999 + . logic_name=eponine scaffold_173 . biological_region 20078 20084 0.999 - . logic_name=eponine scaffold_173 . biological_region 20079 20079 0.999 + . logic_name=eponine scaffold_173 . biological_region 20672 20674 0.999 - . logic_name=eponine scaffold_173 . biological_region 20768 20775 0.999 + . logic_name=eponine scaffold_173 . biological_region 20774 20776 0.999 - . logic_name=eponine scaffold_173 . biological_region 20846 20848 0.999 + . logic_name=eponine scaffold_173 . biological_region 20854 20856 0.999 - . logic_name=eponine scaffold_173 . biological_region 20882 20884 0.999 + . logic_name=eponine scaffold_173 . biological_region 20944 20947 0.999 - . logic_name=eponine scaffold_173 . repeat_region 22339 22365 . ? . description=trf scaffold_173 . biological_region 23057 23059 0.999 - . logic_name=eponine scaffold_173 . biological_region 23072 23073 0.999 + . logic_name=eponine scaffold_173 . repeat_region 24436 24451 . ? . description=dust scaffold_173 . repeat_region 24553 24593 . ? . description=dust scaffold_173 . repeat_region 25016 25255 . ? . description=trf scaffold_173 . repeat_region 25035 25240 . ? . description=trf scaffold_173 . biological_region 25318 25322 0.999 - . logic_name=eponine scaffold_173 . repeat_region 25673 25903 . ? . description=trf scaffold_173 . biological_region 25945 25949 0.999 - . logic_name=eponine scaffold_173 . repeat_region 27252 27259 . ? . description=dust scaffold_173 . biological_region 27559 27564 0.999 + . logic_name=eponine scaffold_173 . biological_region 27673 27682 0.999 - . logic_name=eponine scaffold_173 ensembl protein_coding_gene 20395 21759 . + . ID=Physo144217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730007;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 20395 21759 . + . ID=Physo144217;Parent=Physo144217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 20395 20484 . + 0 ID=Physo144217;Parent=Physo144217;rank=1 scaffold_173 . exon 20395 20484 . + . ID=Physo144217.1;Parent=Physo144217;constitutive=1;rank=1 scaffold_173 . CDS 20563 21759 . + 0 ID=Physo144217;Parent=Physo144217;rank=2 scaffold_173 . exon 20563 21759 . + . ID=Physo144217.2;Parent=Physo144217;constitutive=1;rank=2 scaffold_173 ensembl protein_coding_gene 22267 23424 . - . ID=Physo144218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730008;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 22267 23424 . - . ID=Physo144218;Parent=Physo144218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 22267 23424 . - 0 ID=Physo144218;Parent=Physo144218;rank=1 scaffold_173 . exon 22267 23424 . - . ID=Physo144218.1;Parent=Physo144218;constitutive=1;rank=1 scaffold_173 ensembl protein_coding_gene 24629 26245 . - . ID=Physo144219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730009;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 24629 26245 . - . ID=Physo144219;Parent=Physo144219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 24629 26245 . - 0 ID=Physo144219;Parent=Physo144219;rank=1 scaffold_173 . exon 24629 26245 . - . ID=Physo144219.1;Parent=Physo144219;constitutive=1;rank=1 scaffold_173 ensembl protein_coding_gene 27363 28765 . + . ID=Physo144220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730010;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 27363 28765 . + . ID=Physo144220;Parent=Physo144220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . exon 27363 27441 . + . ID=Physo144220.1;Parent=Physo144220;constitutive=1;ensembl_phase=-1;rank=1 scaffold_173 . CDS 27385 27441 . + 0 ID=Physo144220;Parent=Physo144220;rank=1 scaffold_173 . CDS 27534 27734 . + 0 ID=Physo144220;Parent=Physo144220;rank=2 scaffold_173 . exon 27534 27734 . + . ID=Physo144220.2;Parent=Physo144220;constitutive=1;rank=2 scaffold_173 . CDS 27807 27908 . + 0 ID=Physo144220;Parent=Physo144220;rank=3 scaffold_173 . exon 27807 27908 . + . ID=Physo144220.3;Parent=Physo144220;constitutive=1;rank=3 scaffold_173 . CDS 27977 28260 . + 0 ID=Physo144220;Parent=Physo144220;rank=4 scaffold_173 . exon 27977 28260 . + . ID=Physo144220.4;Parent=Physo144220;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_173 . CDS 28327 28537 . + 0 ID=Physo144220;Parent=Physo144220;rank=5 scaffold_173 . exon 28327 28537 . + . ID=Physo144220.5;Parent=Physo144220;constitutive=1;ensembl_phase=2;rank=5 scaffold_173 . CDS 28616 28765 . + 0 ID=Physo144220;Parent=Physo144220;rank=6 scaffold_173 ensembl protein_coding_gene 28894 29916 . - . ID=Physo109621;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1730001;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 28894 29916 . - . ID=Physo109621;Parent=Physo109621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 28894 29916 . - 0 ID=Physo109621;Parent=Physo109621;rank=1 scaffold_173 . exon 28894 29916 . - . ID=Physo109621.1;Parent=Physo109621;constitutive=1;rank=1 scaffold_173 . exon 28616 28765 . + . ID=Physo144220.6;Parent=Physo144220;constitutive=1;rank=6 scaffold_173 ensembl protein_coding_gene 30229 32715 . - . ID=Physo144222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730012;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 30229 32715 . - . ID=Physo144222;Parent=Physo144222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 30229 30234 . - 0 ID=Physo144222;Parent=Physo144222;rank=14 scaffold_173 . exon 30229 30234 . - . ID=Physo144222.14;Parent=Physo144222;constitutive=1;rank=14 scaffold_173 . CDS 30332 30475 . - 0 ID=Physo144222;Parent=Physo144222;rank=13 scaffold_173 . exon 30332 30475 . - . ID=Physo144222.13;Parent=Physo144222;constitutive=1;rank=13 scaffold_173 . CDS 30548 30831 . - 0 ID=Physo144222;Parent=Physo144222;rank=12 scaffold_173 . exon 30548 30831 . - . ID=Physo144222.12;Parent=Physo144222;constitutive=1;ensembl_phase=1;rank=12 scaffold_173 . CDS 30882 30927 . - 0 ID=Physo144222;Parent=Physo144222;rank=11 scaffold_173 . exon 30882 30927 . - . ID=Physo144222.11;Parent=Physo144222;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_173 . CDS 31068 31071 . - 0 ID=Physo144222;Parent=Physo144222;rank=10 scaffold_173 . exon 31068 31071 . - . ID=Physo144222.10;Parent=Physo144222;constitutive=1;ensembl_phase=2;rank=10 scaffold_173 . CDS 31197 31268 . - 0 ID=Physo144222;Parent=Physo144222;rank=9 scaffold_173 . exon 31197 31268 . - . ID=Physo144222.9;Parent=Physo144222;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_173 . CDS 31332 31400 . - 0 ID=Physo144222;Parent=Physo144222;rank=8 scaffold_173 . exon 31332 31400 . - . ID=Physo144222.8;Parent=Physo144222;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_173 . CDS 31467 31503 . - 0 ID=Physo144222;Parent=Physo144222;rank=7 scaffold_173 . exon 31467 31503 . - . ID=Physo144222.7;Parent=Physo144222;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_173 . CDS 31580 31625 . - 0 ID=Physo144222;Parent=Physo144222;rank=6 scaffold_173 . exon 31580 31625 . - . ID=Physo144222.6;Parent=Physo144222;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_173 . CDS 31696 31782 . - 0 ID=Physo144222;Parent=Physo144222;rank=5 scaffold_173 . exon 31696 31782 . - . ID=Physo144222.5;Parent=Physo144222;constitutive=1;rank=5 scaffold_173 . CDS 31854 32050 . - 0 ID=Physo144222;Parent=Physo144222;rank=4 scaffold_173 . exon 31854 32050 . - . ID=Physo144222.4;Parent=Physo144222;constitutive=1;ensembl_phase=1;rank=4 scaffold_173 . CDS 32136 32197 . - 0 ID=Physo144222;Parent=Physo144222;rank=3 scaffold_173 . exon 32136 32197 . - . ID=Physo144222.3;Parent=Physo144222;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_173 . CDS 32285 32369 . - 0 ID=Physo144222;Parent=Physo144222;rank=2 scaffold_173 . exon 32285 32369 . - . ID=Physo144222.2;Parent=Physo144222;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_173 . CDS 32463 32715 . - 0 ID=Physo144222;Parent=Physo144222;rank=1 scaffold_173 . exon 32463 32715 . - . ID=Physo144222.1;Parent=Physo144222;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_173 ensembl protein_coding_gene 33022 34599 . - . ID=Physo144223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730013;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 33022 34599 . - . ID=Physo144223;Parent=Physo144223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 33022 34599 . - 0 ID=Physo144223;Parent=Physo144223;rank=1 scaffold_173 . exon 33022 34599 . - . ID=Physo144223.1;Parent=Physo144223;constitutive=1;rank=1 scaffold_173 ensembl protein_coding_gene 35518 37528 . + . ID=Physo144224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730014;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 35518 37528 . + . ID=Physo144224;Parent=Physo144224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 35518 35613 . + 0 ID=Physo144224;Parent=Physo144224;rank=1 scaffold_173 . exon 35518 35613 . + . ID=Physo144224.1;Parent=Physo144224;constitutive=1;rank=1 scaffold_173 . CDS 35686 35773 . + 0 ID=Physo144224;Parent=Physo144224;rank=2 scaffold_173 . exon 35686 35773 . + . ID=Physo144224.2;Parent=Physo144224;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_173 . CDS 35853 36470 . + 0 ID=Physo144224;Parent=Physo144224;rank=3 scaffold_173 . exon 35853 36470 . + . ID=Physo144224.3;Parent=Physo144224;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_173 . CDS 36813 37528 . + 0 ID=Physo144224;Parent=Physo144224;rank=4 scaffold_173 . exon 36813 37528 . + . ID=Physo144224.4;Parent=Physo144224;constitutive=1;ensembl_phase=1;rank=4 scaffold_173 ensembl protein_coding_gene 37642 38621 . - . ID=Physo158900;biotype=protein_coding;external_name=C_scaffold_173000011;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 37642 38621 . - . ID=Physo158900;Parent=Physo158900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 37642 38429 . - 0 ID=Physo158900;Parent=Physo158900;rank=2 scaffold_173 . exon 37642 38429 . - . ID=Physo158900.2;Parent=Physo158900;constitutive=1;ensembl_phase=1;rank=2 scaffold_173 . CDS 38510 38621 . - 0 ID=Physo158900;Parent=Physo158900;rank=1 scaffold_173 . biological_region 38107 38113 0.999 - . logic_name=eponine scaffold_173 . biological_region 38112 38113 0.999 + . logic_name=eponine scaffold_173 . biological_region 38179 38186 0.999 - . logic_name=eponine scaffold_173 . biological_region 38237 38239 0.999 + . logic_name=eponine scaffold_173 . biological_region 38742 38747 0.999 - . logic_name=eponine scaffold_173 . biological_region 38754 38754 0.999 - . logic_name=eponine scaffold_173 . biological_region 39356 39357 0.999 + . logic_name=eponine scaffold_173 . biological_region 39365 39370 0.999 + . logic_name=eponine scaffold_173 . biological_region 39402 39416 0.999 - . logic_name=eponine scaffold_173 . biological_region 39461 39471 0.999 - . logic_name=eponine scaffold_173 . repeat_region 39517 39535 . ? . description=dust scaffold_173 . biological_region 39613 39626 0.999 - . logic_name=eponine scaffold_173 . biological_region 39642 39643 0.999 - . logic_name=eponine scaffold_173 . biological_region 39829 39832 0.999 + . logic_name=eponine scaffold_173 . biological_region 39903 39910 0.999 - . logic_name=eponine scaffold_173 . biological_region 39946 39952 0.999 - . logic_name=eponine scaffold_173 . biological_region 39967 39973 0.999 - . logic_name=eponine scaffold_173 . biological_region 40211 40213 0.999 + . logic_name=eponine scaffold_173 . biological_region 40296 40298 0.999 + . logic_name=eponine scaffold_173 . biological_region 40370 40372 0.999 - . logic_name=eponine scaffold_173 . biological_region 40381 40382 0.999 + . logic_name=eponine scaffold_173 . biological_region 40390 40391 0.999 - . logic_name=eponine scaffold_173 . repeat_region 41723 41772 . ? . description=trf scaffold_173 . repeat_region 45672 45697 . ? . description=trf scaffold_173 . repeat_region 46211 46240 . ? . description=trf scaffold_173 . repeat_region 46458 46472 . ? . description=dust scaffold_173 . repeat_region 46879 46920 . ? . description=dust scaffold_173 . repeat_region 46893 46920 . ? . description=trf scaffold_173 . repeat_region 47215 47238 . ? . description=trf scaffold_173 . repeat_region 47485 47527 . ? . description=trf scaffold_173 . repeat_region 47542 47678 . + . description=(TCG)n scaffold_173 . repeat_region 47561 47666 . ? . description=trf scaffold_173 . repeat_region 47561 47678 . ? . description=trf scaffold_173 . repeat_region 47569 47672 . ? . description=trf scaffold_173 . repeat_region 47569 47678 . ? . description=trf scaffold_173 . repeat_region 47578 47678 . ? . description=dust scaffold_173 ensembl protein_coding_gene 42240 44793 . - . ID=Physo124722;biotype=protein_coding;external_name=estExt_Genewise1.C_1730023;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 42240 44793 . - . ID=Physo124722;Parent=Physo124722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 42240 42480 . - 0 ID=Physo124722;Parent=Physo124722;rank=5 scaffold_173 . exon 42240 42480 . - . ID=Physo124722.5;Parent=Physo124722;constitutive=1;ensembl_phase=2;rank=5 scaffold_173 . CDS 42566 43485 . - 0 ID=Physo124722;Parent=Physo124722;rank=4 scaffold_173 . exon 42566 43485 . - . ID=Physo124722.4;Parent=Physo124722;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_173 . CDS 43548 43701 . - 0 ID=Physo124722;Parent=Physo124722;rank=3 scaffold_173 . exon 43548 43701 . - . ID=Physo124722.3;Parent=Physo124722;constitutive=1;ensembl_phase=2;rank=3 scaffold_173 . CDS 43767 43881 . - 0 ID=Physo124722;Parent=Physo124722;rank=2 scaffold_173 . exon 43767 43881 . - . ID=Physo124722.2;Parent=Physo124722;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_173 . CDS 43956 44733 . - 0 ID=Physo124722;Parent=Physo124722;rank=1 scaffold_173 . exon 43956 44793 . - . ID=Physo124722.1;Parent=Physo124722;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_173 ensembl protein_coding_gene 39314 42180 . + . ID=Physo144226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730016;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 39314 42180 . + . ID=Physo144226;Parent=Physo144226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 39314 39976 . + 0 ID=Physo144226;Parent=Physo144226;rank=1 scaffold_173 . exon 39314 39976 . + . ID=Physo144226.1;Parent=Physo144226;constitutive=1;rank=1 scaffold_173 . CDS 40061 41965 . + 0 ID=Physo144226;Parent=Physo144226;rank=2 scaffold_173 . exon 40061 42180 . + . ID=Physo144226.2;Parent=Physo144226;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_173 . exon 38510 38621 . - . ID=Physo158900.1;Parent=Physo158900;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_173 . repeat_region 56939 57164 . + . description=GypsyPi-1c_LTR scaffold_173 ensembl protein_coding_gene 48434 49363 . + . ID=Physo144228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730018;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 48434 49363 . + . ID=Physo144228;Parent=Physo144228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 48434 49363 . + 0 ID=Physo144228;Parent=Physo144228;rank=1 scaffold_173 . exon 48434 49363 . + . ID=Physo144228.1;Parent=Physo144228;constitutive=1;rank=1 scaffold_173 ensembl protein_coding_gene 49527 50513 . - . ID=Physo144229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730019;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 49527 50513 . - . ID=Physo144229;Parent=Physo144229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 49527 50513 . - 0 ID=Physo144229;Parent=Physo144229;rank=1 scaffold_173 . exon 49527 50513 . - . ID=Physo144229.1;Parent=Physo144229;constitutive=1;rank=1 scaffold_173 ensembl protein_coding_gene 51676 52774 . + . ID=Physo144230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730020;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 51676 52774 . + . ID=Physo144230;Parent=Physo144230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 51676 51681 . + 0 ID=Physo144230;Parent=Physo144230;rank=1 scaffold_173 . exon 51676 51681 . + . ID=Physo144230.1;Parent=Physo144230;constitutive=1;rank=1 scaffold_173 . CDS 51710 51845 . + 0 ID=Physo144230;Parent=Physo144230;rank=2 scaffold_173 . exon 51710 51845 . + . ID=Physo144230.2;Parent=Physo144230;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_173 . CDS 51918 52197 . + 0 ID=Physo144230;Parent=Physo144230;rank=3 scaffold_173 . exon 51918 52197 . + . ID=Physo144230.3;Parent=Physo144230;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_173 . CDS 52277 52562 . + 0 ID=Physo144230;Parent=Physo144230;rank=4 scaffold_173 . exon 52277 52774 . + . ID=Physo144230.4;Parent=Physo144230;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_173 . repeat_region 57227 59450 . + . description=GypsyPi-1c_I-int scaffold_173 . repeat_region 58641 58690 . ? . description=trf scaffold_173 . repeat_region 58647 58697 . ? . description=trf scaffold_173 . repeat_region 59259 59430 . ? . description=trf scaffold_173 . biological_region 59676 59678 0.999 + . logic_name=eponine scaffold_173 . repeat_region 60293 60370 . + . description=GypsyPi-1c_I-int scaffold_173 . repeat_region 62188 63874 . + . description=GypsyPi-1c_I-int scaffold_173 . repeat_region 63591 63640 . ? . description=trf scaffold_173 . repeat_region 63597 63647 . ? . description=trf scaffold_173 . repeat_region 63981 64030 . ? . description=dust scaffold_173 . repeat_region 64590 64667 . + . description=GypsyPi-1c_I-int scaffold_173 . repeat_region 66368 66417 . ? . description=dust scaffold_173 . repeat_region 66497 68618 . + . description=GypsyPi-1c_I-int scaffold_173 ensembl protein_coding_gene 57314 58279 . + . ID=Physo144232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730022;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 57314 58279 . + . ID=Physo144232;Parent=Physo144232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 57314 58279 . + 0 ID=Physo144232;Parent=Physo144232;rank=1 scaffold_173 . exon 57314 58279 . + . ID=Physo144232.1;Parent=Physo144232;constitutive=1;rank=1 scaffold_173 ensembl protein_coding_gene 66584 67538 . + . ID=Physo144233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730023;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 66584 67538 . + . ID=Physo144233;Parent=Physo144233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 66584 67148 . + 0 ID=Physo144233;Parent=Physo144233;rank=1 scaffold_173 . exon 66584 67148 . + . ID=Physo144233.1;Parent=Physo144233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_173 . CDS 67186 67538 . + 0 ID=Physo144233;Parent=Physo144233;rank=2 scaffold_173 . repeat_region 69743 69879 . + . description=GypsyPi-1c_LTR scaffold_173 . repeat_region 74531 74836 . + . description=GypsyPi-1c_LTR scaffold_173 . exon 67186 67538 . + . ID=Physo144233.2;Parent=Physo144233;constitutive=1;ensembl_phase=1;rank=2 scaffold_173 ensembl protein_coding_gene 69967 70921 . + . ID=Physo144234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730024;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 69967 70921 . + . ID=Physo144234;Parent=Physo144234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 69967 70531 . + 0 ID=Physo144234;Parent=Physo144234;rank=1 scaffold_173 . exon 69967 70531 . + . ID=Physo144234.1;Parent=Physo144234;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_173 . CDS 70569 70921 . + 0 ID=Physo144234;Parent=Physo144234;rank=2 scaffold_173 . exon 70569 70921 . + . ID=Physo144234.2;Parent=Physo144234;constitutive=1;ensembl_phase=1;rank=2 scaffold_173 . repeat_region 76679 76691 . ? . description=dust scaffold_173 . repeat_region 79293 80085 . ? . description=dust scaffold_173 . repeat_region 80086 80137 . ? . description=trf scaffold_173 . biological_region 81047 81048 0.999 + . logic_name=eponine scaffold_173 . repeat_region 82903 82955 . ? . description=trf scaffold_173 . repeat_region 82903 82955 . ? . description=trf scaffold_173 . repeat_region 83269 84442 . ? . description=dust scaffold_173 . biological_region 85295 85297 0.999 - . logic_name=eponine scaffold_173 ensembl protein_coding_gene 78060 79273 . + . ID=Physo144235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730025;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 78060 79273 . + . ID=Physo144235;Parent=Physo144235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 78060 78302 . + 0 ID=Physo144235;Parent=Physo144235;rank=1 scaffold_173 . exon 78060 78302 . + . ID=Physo144235.1;Parent=Physo144235;constitutive=1;rank=1 scaffold_173 . CDS 78343 78507 . + 0 ID=Physo144235;Parent=Physo144235;rank=2 scaffold_173 . exon 78343 78507 . + . ID=Physo144235.2;Parent=Physo144235;constitutive=1;rank=2 scaffold_173 . CDS 78592 79196 . + 0 ID=Physo144235;Parent=Physo144235;rank=3 scaffold_173 . exon 78592 79196 . + . ID=Physo144235.3;Parent=Physo144235;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_173 . CDS 79216 79273 . + 0 ID=Physo144235;Parent=Physo144235;rank=4 scaffold_173 . exon 79216 79273 . + . ID=Physo144235.4;Parent=Physo144235;constitutive=1;ensembl_phase=2;rank=4 scaffold_173 ensembl protein_coding_gene 84705 85729 . + . ID=Physo144236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1730026;logic_name=jgi_physo1_1 scaffold_173 ensembl transcript 84705 85729 . + . ID=Physo144236;Parent=Physo144236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_173 . CDS 84705 84919 . + 0 ID=Physo144236;Parent=Physo144236;rank=1 scaffold_173 . exon 84705 84919 . + . ID=Physo144236.1;Parent=Physo144236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_173 . CDS 85014 85728 . + 0 ID=Physo144236;Parent=Physo144236;rank=2 scaffold_173 . exon 85014 85729 . + . ID=Physo144236.2;Parent=Physo144236;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_172 1 86296 scaffold_172 . biological_region 208 210 0.999 + . logic_name=eponine scaffold_172 . repeat_region 563 570 . ? . description=dust scaffold_172 . repeat_region 2262 5284 . ? . description=dust scaffold_172 . repeat_region 8164 8257 . ? . description=trf scaffold_172 . repeat_region 8164 8344 . + . description=(CAG)n scaffold_172 . repeat_region 8201 8332 . ? . description=trf scaffold_172 . repeat_region 8204 8275 . ? . description=dust scaffold_172 . repeat_region 8239 8275 . ? . description=trf scaffold_172 . repeat_region 8296 8344 . ? . description=trf scaffold_172 . repeat_region 8298 8344 . ? . description=dust scaffold_172 . repeat_region 8298 8344 . ? . description=trf scaffold_172 . repeat_region 8495 8679 . - . description=Polinton-1_PI scaffold_172 . repeat_region 8696 8750 . - . description=Polinton-1_PI scaffold_172 . repeat_region 8955 9007 . ? . description=trf scaffold_172 . repeat_region 8955 9007 . ? . description=trf scaffold_172 ensembl protein_coding_gene 7004 8470 . + . ID=Physo144191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720001;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 7004 8470 . + . ID=Physo144191;Parent=Physo144191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 7004 8470 . + 0 ID=Physo144191;Parent=Physo144191;rank=1 scaffold_172 . exon 7004 8470 . + . ID=Physo144191.1;Parent=Physo144191;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 9154 11517 . + . ID=Physo144192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720002;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 9154 11517 . + . ID=Physo144192;Parent=Physo144192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 9154 9991 . + 0 ID=Physo144192;Parent=Physo144192;rank=1 scaffold_172 . exon 9154 9991 . + . ID=Physo144192.1;Parent=Physo144192;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_172 . CDS 10032 11515 . + 0 ID=Physo144192;Parent=Physo144192;rank=2 scaffold_172 ensembl protein_coding_gene 11645 13228 . + . ID=Physo109620;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1720001;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 11645 13228 . + . ID=Physo109620;Parent=Physo109620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 11645 13228 . + 0 ID=Physo109620;Parent=Physo109620;rank=1 scaffold_172 . exon 11645 13228 . + . ID=Physo109620.1;Parent=Physo109620;constitutive=1;rank=1 scaffold_172 . exon 10032 11517 . + . ID=Physo144192.2;Parent=Physo144192;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_172 ensembl pseudogene 13699 14752 . + . ID=Physo144194;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_1720004;logic_name=jgi_physo1_1 scaffold_172 ensembl pseudogene 13699 14752 . + . ID=Physo144194;Parent=Physo144194;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_172 . exon 13699 13717 . + . ID=Physo144194.1;Parent=Physo144194;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_172 . exon 13805 13897 . + . ID=Physo144194.2;Parent=Physo144194;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_172 . exon 14032 14752 . + . ID=Physo144194.3;Parent=Physo144194;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_172 ensembl protein_coding_gene 15623 18466 . + . ID=Physo144195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720005;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 15623 18466 . + . ID=Physo144195;Parent=Physo144195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 15623 18466 . + 0 ID=Physo144195;Parent=Physo144195;rank=1 scaffold_172 . exon 15623 18466 . + . ID=Physo144195.1;Parent=Physo144195;constitutive=1;rank=1 scaffold_172 . repeat_region 14932 28760 . + . description=Polinton-1_PI scaffold_172 . repeat_region 21368 21379 . ? . description=dust scaffold_172 . repeat_region 21401 21408 . ? . description=dust scaffold_172 . repeat_region 23978 23986 . ? . description=dust scaffold_172 . repeat_region 26396 26596 . ? . description=trf scaffold_172 . biological_region 33036 33041 0.999 + . logic_name=eponine scaffold_172 . repeat_region 33991 34038 . + . description=(CTG)n scaffold_172 . biological_region 34195 34196 0.999 + . logic_name=eponine scaffold_172 ensembl protein_coding_gene 33868 35238 . - . ID=Physo144196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720006;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 33868 35238 . - . ID=Physo144196;Parent=Physo144196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 33868 35238 . - 0 ID=Physo144196;Parent=Physo144196;rank=1 scaffold_172 . exon 33868 35238 . - . ID=Physo144196.1;Parent=Physo144196;constitutive=1;rank=1 scaffold_172 . repeat_region 39859 39891 . ? . description=dust scaffold_172 . repeat_region 39859 39896 . ? . description=trf scaffold_172 . repeat_region 39859 39906 . + . description=(CAG)n scaffold_172 . repeat_region 43170 43186 . ? . description=dust scaffold_172 . repeat_region 43339 43347 . ? . description=dust scaffold_172 . repeat_region 43506 43514 . ? . description=dust scaffold_172 . repeat_region 44023 44042 . ? . description=trf scaffold_172 . repeat_region 46732 46853 . ? . description=trf scaffold_172 . repeat_region 46752 46795 . ? . description=trf scaffold_172 . repeat_region 46806 46851 . ? . description=trf scaffold_172 . repeat_region 47448 47497 . ? . description=dust scaffold_172 . repeat_region 47526 47534 . ? . description=dust scaffold_172 . repeat_region 47693 47701 . ? . description=dust scaffold_172 ensembl protein_coding_gene 38659 40029 . + . ID=Physo144197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720007;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 38659 40029 . + . ID=Physo144197;Parent=Physo144197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 38659 40029 . + 0 ID=Physo144197;Parent=Physo144197;rank=1 scaffold_172 . exon 38659 40029 . + . ID=Physo144197.1;Parent=Physo144197;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 40464 41465 . - . ID=Physo144198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720008;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 40464 41465 . - . ID=Physo144198;Parent=Physo144198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 40464 40933 . - 0 ID=Physo144198;Parent=Physo144198;rank=3 scaffold_172 . exon 40464 40933 . - . ID=Physo144198.3;Parent=Physo144198;constitutive=1;ensembl_phase=1;rank=3 scaffold_172 . CDS 41022 41172 . - 0 ID=Physo144198;Parent=Physo144198;rank=2 scaffold_172 . exon 41022 41172 . - . ID=Physo144198.2;Parent=Physo144198;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_172 . CDS 41259 41465 . - 0 ID=Physo144198;Parent=Physo144198;rank=1 scaffold_172 . exon 41259 41465 . - . ID=Physo144198.1;Parent=Physo144198;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 42338 43155 . - . ID=Physo144199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720009;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 42338 43155 . - . ID=Physo144199;Parent=Physo144199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 42338 42747 . - 0 ID=Physo144199;Parent=Physo144199;rank=3 scaffold_172 . exon 42338 42747 . - . ID=Physo144199.3;Parent=Physo144199;constitutive=1;ensembl_phase=1;rank=3 scaffold_172 . CDS 42821 42971 . - 0 ID=Physo144199;Parent=Physo144199;rank=2 scaffold_172 . exon 42821 42971 . - . ID=Physo144199.2;Parent=Physo144199;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_172 . CDS 42991 43155 . - 0 ID=Physo144199;Parent=Physo144199;rank=1 scaffold_172 . exon 42991 43155 . - . ID=Physo144199.1;Parent=Physo144199;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 44264 45108 . - . ID=Physo144200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720010;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 44264 45108 . - . ID=Physo144200;Parent=Physo144200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 44264 44704 . - 0 ID=Physo144200;Parent=Physo144200;rank=2 scaffold_172 . exon 44264 44704 . - . ID=Physo144200.2;Parent=Physo144200;constitutive=1;rank=2 scaffold_172 . CDS 44833 45108 . - 0 ID=Physo144200;Parent=Physo144200;rank=1 scaffold_172 . exon 44833 45108 . - . ID=Physo144200.1;Parent=Physo144200;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 45465 46733 . + . ID=Physo144201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720011;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 45465 46733 . + . ID=Physo144201;Parent=Physo144201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 45465 46733 . + 0 ID=Physo144201;Parent=Physo144201;rank=1 scaffold_172 . exon 45465 46733 . + . ID=Physo144201.1;Parent=Physo144201;constitutive=1;rank=1 scaffold_172 . biological_region 49948 49952 0.999 + . logic_name=eponine scaffold_172 . biological_region 49998 50002 0.999 + . logic_name=eponine scaffold_172 . biological_region 50069 50073 0.999 + . logic_name=eponine scaffold_172 . biological_region 50129 50135 0.999 + . logic_name=eponine scaffold_172 . biological_region 50130 50134 0.999 - . logic_name=eponine scaffold_172 . biological_region 50261 50262 0.999 - . logic_name=eponine scaffold_172 . biological_region 51779 51781 0.999 - . logic_name=eponine scaffold_172 . biological_region 54925 54930 0.999 - . logic_name=eponine scaffold_172 . biological_region 55838 55839 0.999 - . logic_name=eponine scaffold_172 ensembl protein_coding_gene 48451 49295 . - . ID=Physo144202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720012;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 48451 49295 . - . ID=Physo144202;Parent=Physo144202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 48451 48891 . - 0 ID=Physo144202;Parent=Physo144202;rank=2 scaffold_172 . exon 48451 48891 . - . ID=Physo144202.2;Parent=Physo144202;constitutive=1;rank=2 scaffold_172 . CDS 49020 49295 . - 0 ID=Physo144202;Parent=Physo144202;rank=1 scaffold_172 . exon 49020 49295 . - . ID=Physo144202.1;Parent=Physo144202;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 49652 50708 . + . ID=Physo144203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720013;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 49652 50708 . + . ID=Physo144203;Parent=Physo144203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 49652 50579 . + 0 ID=Physo144203;Parent=Physo144203;rank=1 scaffold_172 . exon 49652 50579 . + . ID=Physo144203.1;Parent=Physo144203;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_172 . CDS 50677 50708 . + 0 ID=Physo144203;Parent=Physo144203;rank=2 scaffold_172 . exon 50677 50708 . + . ID=Physo144203.2;Parent=Physo144203;constitutive=1;ensembl_phase=1;rank=2 scaffold_172 . repeat_region 57731 57780 . ? . description=dust scaffold_172 . repeat_region 59691 59714 . ? . description=trf scaffold_172 . repeat_region 59910 59970 . ? . description=dust scaffold_172 . repeat_region 63622 63685 . ? . description=trf scaffold_172 . repeat_region 64682 64748 . ? . description=trf scaffold_172 ensembl protein_coding_gene 60873 65049 . + . ID=Physo144204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720014;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 60873 65049 . + . ID=Physo144204;Parent=Physo144204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 60873 61232 . + 0 ID=Physo144204;Parent=Physo144204;rank=1 scaffold_172 . exon 60873 61232 . + . ID=Physo144204.1;Parent=Physo144204;constitutive=1;rank=1 scaffold_172 . CDS 61261 61717 . + 0 ID=Physo144204;Parent=Physo144204;rank=2 scaffold_172 . exon 61261 61717 . + . ID=Physo144204.2;Parent=Physo144204;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_172 . CDS 61898 62784 . + 0 ID=Physo144204;Parent=Physo144204;rank=3 scaffold_172 . exon 61898 62784 . + . ID=Physo144204.3;Parent=Physo144204;constitutive=1;ensembl_phase=1;rank=3 scaffold_172 . CDS 62947 63202 . + 0 ID=Physo144204;Parent=Physo144204;rank=4 scaffold_172 . exon 62947 63202 . + . ID=Physo144204.4;Parent=Physo144204;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_172 . CDS 63419 65049 . + 0 ID=Physo144204;Parent=Physo144204;rank=5 scaffold_172 . exon 63419 65049 . + . ID=Physo144204.5;Parent=Physo144204;constitutive=1;ensembl_phase=1;rank=5 scaffold_172 ensembl protein_coding_gene 65803 67833 . + . ID=Physo144205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720015;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 65803 67833 . + . ID=Physo144205;Parent=Physo144205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 65803 66489 . + 0 ID=Physo144205;Parent=Physo144205;rank=1 scaffold_172 . exon 65803 66489 . + . ID=Physo144205.1;Parent=Physo144205;constitutive=1;rank=1 scaffold_172 . CDS 66579 67067 . + 0 ID=Physo144205;Parent=Physo144205;rank=2 scaffold_172 . exon 66579 67067 . + . ID=Physo144205.2;Parent=Physo144205;constitutive=1;rank=2 scaffold_172 . CDS 67153 67833 . + 0 ID=Physo144205;Parent=Physo144205;rank=3 scaffold_172 . exon 67153 67833 . + . ID=Physo144205.3;Parent=Physo144205;constitutive=1;rank=3 scaffold_172 ensembl protein_coding_gene 69987 70760 . + . ID=Physo144206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720016;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 69987 70760 . + . ID=Physo144206;Parent=Physo144206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 69987 70760 . + 0 ID=Physo144206;Parent=Physo144206;rank=1 scaffold_172 . exon 69987 70760 . + . ID=Physo144206.1;Parent=Physo144206;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 71410 72429 . + . ID=Physo144207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720017;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 71410 72429 . + . ID=Physo144207;Parent=Physo144207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 71410 72429 . + 0 ID=Physo144207;Parent=Physo144207;rank=1 scaffold_172 . exon 71410 72429 . + . ID=Physo144207.1;Parent=Physo144207;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 73174 78322 . + . ID=Physo144208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720018;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 73174 78322 . + . ID=Physo144208;Parent=Physo144208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 73174 73517 . + 0 ID=Physo144208;Parent=Physo144208;rank=1 scaffold_172 . exon 73174 73517 . + . ID=Physo144208.1;Parent=Physo144208;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_172 . CDS 73576 73688 . + 0 ID=Physo144208;Parent=Physo144208;rank=2 scaffold_172 . exon 73576 73688 . + . ID=Physo144208.2;Parent=Physo144208;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_172 . CDS 73727 74076 . + 0 ID=Physo144208;Parent=Physo144208;rank=3 scaffold_172 . exon 73727 74076 . + . ID=Physo144208.3;Parent=Physo144208;constitutive=1;ensembl_phase=1;rank=3 scaffold_172 . CDS 74436 75617 . + 0 ID=Physo144208;Parent=Physo144208;rank=4 scaffold_172 . exon 74436 75617 . + . ID=Physo144208.4;Parent=Physo144208;constitutive=1;rank=4 scaffold_172 . CDS 75737 76180 . + 0 ID=Physo144208;Parent=Physo144208;rank=5 scaffold_172 . exon 75737 76180 . + . ID=Physo144208.5;Parent=Physo144208;constitutive=1;rank=5 scaffold_172 . CDS 76201 76561 . + 0 ID=Physo144208;Parent=Physo144208;rank=6 scaffold_172 . exon 76201 76561 . + . ID=Physo144208.6;Parent=Physo144208;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_172 . CDS 76581 76999 . + 0 ID=Physo144208;Parent=Physo144208;rank=7 scaffold_172 . exon 76581 76999 . + . ID=Physo144208.7;Parent=Physo144208;constitutive=1;ensembl_phase=1;rank=7 scaffold_172 . CDS 77120 77146 . + 0 ID=Physo144208;Parent=Physo144208;rank=8 scaffold_172 . CDS 77183 78322 . + 0 ID=Physo144208;Parent=Physo144208;rank=9 scaffold_172 . repeat_region 79102 79121 . ? . description=trf scaffold_172 . repeat_region 80333 80389 . ? . description=trf scaffold_172 . repeat_region 80340 80406 . ? . description=trf scaffold_172 . repeat_region 81028 81066 . ? . description=trf scaffold_172 . biological_region 81919 81921 0.999 - . logic_name=eponine scaffold_172 . biological_region 81988 81992 0.999 - . logic_name=eponine scaffold_172 . repeat_region 82048 82059 . ? . description=dust scaffold_172 . biological_region 82492 82492 0.999 - . logic_name=eponine scaffold_172 . repeat_region 83287 83335 . ? . description=trf scaffold_172 . repeat_region 83442 83483 . ? . description=trf scaffold_172 . exon 77120 77146 . + . ID=Physo144208.8;Parent=Physo144208;constitutive=1;rank=8 scaffold_172 . exon 77183 78322 . + . ID=Physo144208.9;Parent=Physo144208;constitutive=1;rank=9 scaffold_172 ensembl protein_coding_gene 79360 82547 . - . ID=Physo144209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720019;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 79360 82547 . - . ID=Physo144209;Parent=Physo144209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 79360 81276 . - 0 ID=Physo144209;Parent=Physo144209;rank=2 scaffold_172 . exon 79360 81276 . - . ID=Physo144209.2;Parent=Physo144209;constitutive=1;rank=2 scaffold_172 . CDS 81309 82547 . - 0 ID=Physo144209;Parent=Physo144209;rank=1 scaffold_172 . exon 81309 82547 . - . ID=Physo144209.1;Parent=Physo144209;constitutive=1;rank=1 scaffold_172 ensembl protein_coding_gene 84808 86288 . + . ID=Physo144210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1720020;logic_name=jgi_physo1_1 scaffold_172 ensembl transcript 84808 86288 . + . ID=Physo144210;Parent=Physo144210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_172 . CDS 84808 86286 . + 0 ID=Physo144210;Parent=Physo144210;rank=1 scaffold_172 . exon 84808 86288 . + . ID=Physo144210.1;Parent=Physo144210;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_171 1 86932 scaffold_171 . repeat_region 537 635 . ? . description=trf scaffold_171 . repeat_region 609 674 . ? . description=dust scaffold_171 . repeat_region 610 680 . ? . description=trf scaffold_171 . repeat_region 618 681 . ? . description=trf scaffold_171 . repeat_region 618 681 . ? . description=trf scaffold_171 . repeat_region 1082 1580 . ? . description=dust scaffold_171 . repeat_region 2466 2515 . ? . description=dust scaffold_171 . repeat_region 3388 3395 . ? . description=dust scaffold_171 . repeat_region 3908 3957 . ? . description=dust scaffold_171 . repeat_region 5159 17184 . ? . description=dust scaffold_171 ensembl protein_coding_gene 18 770 . + . ID=Physo144171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710001;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 18 770 . + . ID=Physo144171;Parent=Physo144171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 18 770 . + 0 ID=Physo144171;Parent=Physo144171;rank=1 scaffold_171 . exon 18 770 . + . ID=Physo144171.1;Parent=Physo144171;constitutive=1;rank=1 scaffold_171 ensembl protein_coding_gene 1791 2705 . + . ID=Physo144172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710002;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 1791 2705 . + . ID=Physo144172;Parent=Physo144172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 1791 2445 . + 0 ID=Physo144172;Parent=Physo144172;rank=1 scaffold_171 . exon 1791 2445 . + . ID=Physo144172.1;Parent=Physo144172;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_171 . CDS 2695 2705 . + 0 ID=Physo144172;Parent=Physo144172;rank=2 scaffold_171 . exon 2695 2705 . + . ID=Physo144172.2;Parent=Physo144172;constitutive=1;ensembl_phase=1;rank=2 scaffold_171 ensembl protein_coding_gene 17919 19243 . + . ID=Physo144173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710003;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 17919 19243 . + . ID=Physo144173;Parent=Physo144173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 17919 18446 . + 0 ID=Physo144173;Parent=Physo144173;rank=1 scaffold_171 . exon 17919 18446 . + . ID=Physo144173.1;Parent=Physo144173;constitutive=1;rank=1 scaffold_171 . CDS 18491 19243 . + 0 ID=Physo144173;Parent=Physo144173;rank=2 scaffold_171 . exon 18491 19243 . + . ID=Physo144173.2;Parent=Physo144173;constitutive=1;rank=2 scaffold_171 . biological_region 22232 22235 0.999 + . logic_name=eponine scaffold_171 . biological_region 22628 22635 0.999 + . logic_name=eponine scaffold_171 . biological_region 22876 22879 0.999 - . logic_name=eponine scaffold_171 . biological_region 23340 23345 0.999 + . logic_name=eponine scaffold_171 . repeat_region 23363 23389 . ? . description=trf scaffold_171 . biological_region 23374 23378 0.999 + . logic_name=eponine scaffold_171 . biological_region 23427 23431 0.999 + . logic_name=eponine scaffold_171 . biological_region 23440 23452 0.999 - . logic_name=eponine scaffold_171 . repeat_region 23469 23476 . ? . description=dust scaffold_171 . biological_region 23509 23510 0.999 - . logic_name=eponine scaffold_171 . repeat_region 23543 23556 . ? . description=dust scaffold_171 . biological_region 24989 24991 0.999 + . logic_name=eponine scaffold_171 . biological_region 27574 27576 0.999 - . logic_name=eponine scaffold_171 . biological_region 27599 27603 0.999 - . logic_name=eponine scaffold_171 . biological_region 28205 28206 0.999 + . logic_name=eponine scaffold_171 ensembl protein_coding_gene 19720 20826 . + . ID=Physo109619;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1710001;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 19720 20826 . + . ID=Physo109619;Parent=Physo109619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 19720 19986 . + 0 ID=Physo109619;Parent=Physo109619;rank=1 scaffold_171 . exon 19720 19986 . + . ID=Physo109619.1;Parent=Physo109619;constitutive=1;rank=1 scaffold_171 . CDS 20051 20660 . + 0 ID=Physo109619;Parent=Physo109619;rank=2 scaffold_171 . exon 20051 20660 . + . ID=Physo109619.2;Parent=Physo109619;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_171 . CDS 20741 20826 . + 0 ID=Physo109619;Parent=Physo109619;rank=3 scaffold_171 . exon 20741 20826 . + . ID=Physo109619.3;Parent=Physo109619;constitutive=1;ensembl_phase=1;rank=3 scaffold_171 ensembl protein_coding_gene 26722 27321 . - . ID=Physo124664;biotype=protein_coding;external_name=estExt_Genewise1.C_1710011;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 26722 27321 . - . ID=Physo124664;Parent=Physo124664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 26722 27297 . - 0 ID=Physo124664;Parent=Physo124664;rank=1 scaffold_171 . exon 26722 27321 . - . ID=Physo124664.1;Parent=Physo124664;constitutive=1;ensembl_phase=-1;rank=1 scaffold_171 ensembl protein_coding_gene 21656 22819 . - . ID=Physo144175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710005;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 21656 22819 . - . ID=Physo144175;Parent=Physo144175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . exon 21656 21799 . - . ID=Physo144175.3;Parent=Physo144175;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_171 . CDS 21714 21799 . - 0 ID=Physo144175;Parent=Physo144175;rank=3 scaffold_171 . CDS 21872 22478 . - 0 ID=Physo144175;Parent=Physo144175;rank=2 scaffold_171 . exon 21872 22478 . - . ID=Physo144175.2;Parent=Physo144175;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_171 . CDS 22544 22819 . - 0 ID=Physo144175;Parent=Physo144175;rank=1 scaffold_171 . exon 22544 22819 . - . ID=Physo144175.1;Parent=Physo144175;constitutive=1;rank=1 scaffold_171 ensembl protein_coding_gene 24665 25837 . - . ID=Physo144176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710006;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 24665 25837 . - . ID=Physo144176;Parent=Physo144176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 24665 24686 . - 0 ID=Physo144176;Parent=Physo144176;rank=5 scaffold_171 . exon 24665 24686 . - . ID=Physo144176.5;Parent=Physo144176;constitutive=1;ensembl_phase=2;rank=5 scaffold_171 . CDS 24734 24797 . - 0 ID=Physo144176;Parent=Physo144176;rank=4 scaffold_171 . exon 24734 24797 . - . ID=Physo144176.4;Parent=Physo144176;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_171 . CDS 24893 25349 . - 0 ID=Physo144176;Parent=Physo144176;rank=3 scaffold_171 . exon 24893 25349 . - . ID=Physo144176.3;Parent=Physo144176;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_171 . CDS 25454 25501 . - 0 ID=Physo144176;Parent=Physo144176;rank=2 scaffold_171 . exon 25454 25501 . - . ID=Physo144176.2;Parent=Physo144176;constitutive=1;rank=2 scaffold_171 . CDS 25559 25837 . - 0 ID=Physo144176;Parent=Physo144176;rank=1 scaffold_171 . exon 25559 25837 . - . ID=Physo144176.1;Parent=Physo144176;constitutive=1;rank=1 scaffold_171 ensembl protein_coding_gene 28747 29929 . + . ID=Physo144178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710008;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 28747 29929 . + . ID=Physo144178;Parent=Physo144178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 28747 29277 . + 0 ID=Physo144178;Parent=Physo144178;rank=1 scaffold_171 . exon 28747 29277 . + . ID=Physo144178.1;Parent=Physo144178;constitutive=1;rank=1 scaffold_171 . CDS 29372 29929 . + 0 ID=Physo144178;Parent=Physo144178;rank=2 scaffold_171 . exon 29372 29929 . + . ID=Physo144178.2;Parent=Physo144178;constitutive=1;rank=2 scaffold_171 ensembl protein_coding_gene 31369 32460 . - . ID=Physo144179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710009;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 31369 32460 . - . ID=Physo144179;Parent=Physo144179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 31369 32204 . - 0 ID=Physo144179;Parent=Physo144179;rank=2 scaffold_171 . exon 31369 32204 . - . ID=Physo144179.2;Parent=Physo144179;constitutive=1;ensembl_phase=1;rank=2 scaffold_171 . CDS 32337 32460 . - 0 ID=Physo144179;Parent=Physo144179;rank=1 scaffold_171 . exon 32337 32460 . - . ID=Physo144179.1;Parent=Physo144179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_171 ensembl protein_coding_gene 34011 34573 . + . ID=Physo144180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710010;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 34011 34573 . + . ID=Physo144180;Parent=Physo144180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 34011 34283 . + 0 ID=Physo144180;Parent=Physo144180;rank=1 scaffold_171 . exon 34011 34283 . + . ID=Physo144180.1;Parent=Physo144180;constitutive=1;rank=1 scaffold_171 . CDS 34361 34573 . + 0 ID=Physo144180;Parent=Physo144180;rank=2 scaffold_171 . exon 34361 34573 . + . ID=Physo144180.2;Parent=Physo144180;constitutive=1;rank=2 scaffold_171 . biological_region 40063 40063 0.999 + . logic_name=eponine scaffold_171 . repeat_region 40702 47324 . ? . description=dust scaffold_171 ensembl protein_coding_gene 38741 39848 . + . ID=Physo144181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710011;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 38741 39848 . + . ID=Physo144181;Parent=Physo144181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 38741 39010 . + 0 ID=Physo144181;Parent=Physo144181;rank=1 scaffold_171 . exon 38741 39010 . + . ID=Physo144181.1;Parent=Physo144181;constitutive=1;rank=1 scaffold_171 . CDS 39084 39696 . + 0 ID=Physo144181;Parent=Physo144181;rank=2 scaffold_171 . exon 39084 39696 . + . ID=Physo144181.2;Parent=Physo144181;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_171 . CDS 39763 39848 . + 0 ID=Physo144181;Parent=Physo144181;rank=3 scaffold_171 . exon 39763 39848 . + . ID=Physo144181.3;Parent=Physo144181;constitutive=1;ensembl_phase=1;rank=3 scaffold_171 ensembl protein_coding_gene 47591 48707 . + . ID=Physo144182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710012;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 47591 48707 . + . ID=Physo144182;Parent=Physo144182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 47591 47860 . + 0 ID=Physo144182;Parent=Physo144182;rank=1 scaffold_171 . exon 47591 47860 . + . ID=Physo144182.1;Parent=Physo144182;constitutive=1;rank=1 scaffold_171 . CDS 47934 48546 . + 0 ID=Physo144182;Parent=Physo144182;rank=2 scaffold_171 . exon 47934 48546 . + . ID=Physo144182.2;Parent=Physo144182;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_171 . CDS 48622 48707 . + 0 ID=Physo144182;Parent=Physo144182;rank=3 scaffold_171 . repeat_region 50892 50919 . ? . description=trf scaffold_171 . exon 48622 48707 . + . ID=Physo144182.3;Parent=Physo144182;constitutive=1;ensembl_phase=1;rank=3 scaffold_171 ensembl protein_coding_gene 49305 50077 . + . ID=Physo144183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710013;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 49305 50077 . + . ID=Physo144183;Parent=Physo144183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . exon 49305 49584 . + . ID=Physo144183.1;Parent=Physo144183;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_171 . CDS 49355 49584 . + 0 ID=Physo144183;Parent=Physo144183;rank=1 scaffold_171 . CDS 49692 49950 . + 0 ID=Physo144183;Parent=Physo144183;rank=2 scaffold_171 . exon 49692 50077 . + . ID=Physo144183.2;Parent=Physo144183;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_171 ensembl protein_coding_gene 50135 50814 . - . ID=Physo144184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710014;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 50135 50814 . - . ID=Physo144184;Parent=Physo144184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 50135 50475 . - 0 ID=Physo144184;Parent=Physo144184;rank=2 scaffold_171 . exon 50135 50475 . - . ID=Physo144184.2;Parent=Physo144184;constitutive=1;ensembl_phase=1;rank=2 scaffold_171 . CDS 50526 50814 . - 0 ID=Physo144184;Parent=Physo144184;rank=1 scaffold_171 . exon 50526 50814 . - . ID=Physo144184.1;Parent=Physo144184;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_171 ensembl protein_coding_gene 51151 52103 . + . ID=Physo144185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710015;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 51151 52103 . + . ID=Physo144185;Parent=Physo144185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 51151 51583 . + 0 ID=Physo144185;Parent=Physo144185;rank=1 scaffold_171 . exon 51151 51583 . + . ID=Physo144185.1;Parent=Physo144185;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_171 . CDS 51658 52103 . + 0 ID=Physo144185;Parent=Physo144185;rank=2 scaffold_171 . exon 51658 52103 . + . ID=Physo144185.2;Parent=Physo144185;constitutive=1;ensembl_phase=1;rank=2 scaffold_171 ensembl protein_coding_gene 52236 52967 . - . ID=Physo158889;biotype=protein_coding;external_name=C_scaffold_171000003;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 52236 52967 . - . ID=Physo158889;Parent=Physo158889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 52236 52385 . - 0 ID=Physo158889;Parent=Physo158889;rank=2 scaffold_171 . exon 52236 52385 . - . ID=Physo158889.2;Parent=Physo158889;constitutive=1;rank=2 scaffold_171 . CDS 52407 52967 . - 0 ID=Physo158889;Parent=Physo158889;rank=1 scaffold_171 . exon 52407 52967 . - . ID=Physo158889.1;Parent=Physo158889;constitutive=1;rank=1 scaffold_171 . repeat_region 58613 58620 . ? . description=dust scaffold_171 . biological_region 62334 62336 0.999 - . logic_name=eponine scaffold_171 . biological_region 63580 63585 0.999 - . logic_name=eponine scaffold_171 . biological_region 63640 63644 0.999 - . logic_name=eponine scaffold_171 . biological_region 63684 63686 0.999 + . logic_name=eponine scaffold_171 . biological_region 65230 65232 0.999 - . logic_name=eponine scaffold_171 . biological_region 65627 65629 0.999 + . logic_name=eponine scaffold_171 ensembl protein_coding_gene 63363 66398 . + . ID=Physo144187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710017;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 63363 66398 . + . ID=Physo144187;Parent=Physo144187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 63363 64253 . + 0 ID=Physo144187;Parent=Physo144187;rank=1 scaffold_171 . exon 63363 64253 . + . ID=Physo144187.1;Parent=Physo144187;constitutive=1;rank=1 scaffold_171 . CDS 64396 64574 . + 0 ID=Physo144187;Parent=Physo144187;rank=2 scaffold_171 . exon 64396 64574 . + . ID=Physo144187.2;Parent=Physo144187;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_171 . CDS 64715 64737 . + 0 ID=Physo144187;Parent=Physo144187;rank=3 scaffold_171 . exon 64715 64737 . + . ID=Physo144187.3;Parent=Physo144187;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_171 . CDS 64978 65027 . + 0 ID=Physo144187;Parent=Physo144187;rank=4 scaffold_171 . exon 64978 65027 . + . ID=Physo144187.4;Parent=Physo144187;constitutive=1;ensembl_phase=1;rank=4 scaffold_171 . CDS 65100 65628 . + 0 ID=Physo144187;Parent=Physo144187;rank=5 scaffold_171 . exon 65100 65628 . + . ID=Physo144187.5;Parent=Physo144187;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_171 . CDS 65813 65972 . + 0 ID=Physo144187;Parent=Physo144187;rank=6 scaffold_171 . exon 65813 65972 . + . ID=Physo144187.6;Parent=Physo144187;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_171 . CDS 66004 66295 . + 0 ID=Physo144187;Parent=Physo144187;rank=7 scaffold_171 . exon 66004 66398 . + . ID=Physo144187.7;Parent=Physo144187;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_171 ensembl protein_coding_gene 66794 69054 . - . ID=Physo144188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710018;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 66794 69054 . - . ID=Physo144188;Parent=Physo144188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . exon 66794 67181 . - . ID=Physo144188.7;Parent=Physo144188;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_171 . CDS 66795 67181 . - 0 ID=Physo144188;Parent=Physo144188;rank=7 scaffold_171 . CDS 67249 67609 . - 0 ID=Physo144188;Parent=Physo144188;rank=6 scaffold_171 . exon 67249 67609 . - . ID=Physo144188.6;Parent=Physo144188;constitutive=1;ensembl_phase=2;rank=6 scaffold_171 . CDS 67677 67973 . - 0 ID=Physo144188;Parent=Physo144188;rank=5 scaffold_171 . CDS 68255 68458 . - 0 ID=Physo144188;Parent=Physo144188;rank=4 scaffold_171 . CDS 68514 68646 . - 0 ID=Physo144188;Parent=Physo144188;rank=3 scaffold_171 . CDS 68724 68803 . - 0 ID=Physo144188;Parent=Physo144188;rank=2 scaffold_171 . CDS 68951 69054 . - 0 ID=Physo144188;Parent=Physo144188;rank=1 scaffold_171 . repeat_region 73598 73646 . ? . description=trf scaffold_171 . repeat_region 76523 76546 . ? . description=trf scaffold_171 . exon 67677 67973 . - . ID=Physo144188.5;Parent=Physo144188;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_171 . exon 68255 68458 . - . ID=Physo144188.4;Parent=Physo144188;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_171 . exon 68514 68646 . - . ID=Physo144188.3;Parent=Physo144188;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_171 . exon 68724 68803 . - . ID=Physo144188.2;Parent=Physo144188;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_171 . exon 68951 69054 . - . ID=Physo144188.1;Parent=Physo144188;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_171 ensembl protein_coding_gene 73663 75196 . + . ID=Physo144189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710019;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 73663 75196 . + . ID=Physo144189;Parent=Physo144189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 73663 74314 . + 0 ID=Physo144189;Parent=Physo144189;rank=1 scaffold_171 . exon 73663 74314 . + . ID=Physo144189.1;Parent=Physo144189;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_171 . CDS 74475 74646 . + 0 ID=Physo144189;Parent=Physo144189;rank=2 scaffold_171 . exon 74475 74646 . + . ID=Physo144189.2;Parent=Physo144189;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_171 . CDS 74704 74849 . + 0 ID=Physo144189;Parent=Physo144189;rank=3 scaffold_171 . exon 74704 74849 . + . ID=Physo144189.3;Parent=Physo144189;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_171 . CDS 75147 75196 . + 0 ID=Physo144189;Parent=Physo144189;rank=4 scaffold_171 . exon 75147 75196 . + . ID=Physo144189.4;Parent=Physo144189;constitutive=1;ensembl_phase=1;rank=4 scaffold_171 . biological_region 78789 78790 0.999 - . logic_name=eponine scaffold_171 . biological_region 79799 79803 0.999 - . logic_name=eponine scaffold_171 . biological_region 82341 82345 0.999 - . logic_name=eponine scaffold_171 ensembl protein_coding_gene 79349 84973 . + . ID=Physo144190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1710020;logic_name=jgi_physo1_1 scaffold_171 ensembl transcript 79349 84973 . + . ID=Physo144190;Parent=Physo144190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_171 . CDS 79349 79381 . + 0 ID=Physo144190;Parent=Physo144190;rank=1 scaffold_171 . exon 79349 79381 . + . ID=Physo144190.1;Parent=Physo144190;constitutive=1;rank=1 scaffold_171 . CDS 79449 79709 . + 0 ID=Physo144190;Parent=Physo144190;rank=2 scaffold_171 . exon 79449 79709 . + . ID=Physo144190.2;Parent=Physo144190;constitutive=1;rank=2 scaffold_171 . CDS 79749 79835 . + 0 ID=Physo144190;Parent=Physo144190;rank=3 scaffold_171 . exon 79749 79835 . + . ID=Physo144190.3;Parent=Physo144190;constitutive=1;rank=3 scaffold_171 . CDS 80001 80915 . + 0 ID=Physo144190;Parent=Physo144190;rank=4 scaffold_171 . exon 80001 80915 . + . ID=Physo144190.4;Parent=Physo144190;constitutive=1;rank=4 scaffold_171 . CDS 80968 81165 . + 0 ID=Physo144190;Parent=Physo144190;rank=5 scaffold_171 . exon 80968 81165 . + . ID=Physo144190.5;Parent=Physo144190;constitutive=1;rank=5 scaffold_171 . CDS 81217 81481 . + 0 ID=Physo144190;Parent=Physo144190;rank=6 scaffold_171 . exon 81217 81481 . + . ID=Physo144190.6;Parent=Physo144190;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_171 . CDS 82896 83572 . + 0 ID=Physo144190;Parent=Physo144190;rank=7 scaffold_171 . exon 82896 83572 . + . ID=Physo144190.7;Parent=Physo144190;constitutive=1;ensembl_phase=1;rank=7 scaffold_171 . CDS 83618 84973 . + 0 ID=Physo144190;Parent=Physo144190;rank=8 scaffold_171 . exon 83618 84973 . + . ID=Physo144190.8;Parent=Physo144190;constitutive=1;rank=8 ##gff-version 3 ##sequence-region scaffold_176 1 88144 scaffold_176 . repeat_region 2 1703 . + . description=GypsyPi-1c_I-int scaffold_176 . repeat_region 2003 2283 . + . description=GypsyPi-1c_I-int scaffold_176 . biological_region 3688 3696 0.999 - . logic_name=eponine scaffold_176 . biological_region 3745 3752 0.999 + . logic_name=eponine scaffold_176 . repeat_region 4110 4414 . + . description=GypsyPi-1c_LTR scaffold_176 ensembl protein_coding_gene 45 2045 . + . ID=Physo144278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1760001;logic_name=jgi_physo1_1 scaffold_176 ensembl transcript 45 2045 . + . ID=Physo144278;Parent=Physo144278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_176 . exon 45 1087 . + . ID=Physo144278.1;Parent=Physo144278;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_176 . CDS 177 1087 . + 0 ID=Physo144278;Parent=Physo144278;rank=1 scaffold_176 . CDS 1267 1998 . + 0 ID=Physo144278;Parent=Physo144278;rank=2 scaffold_176 . exon 1267 1998 . + . ID=Physo144278.2;Parent=Physo144278;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_176 . CDS 2039 2045 . + 0 ID=Physo144278;Parent=Physo144278;rank=3 scaffold_176 . exon 2039 2045 . + . ID=Physo144278.3;Parent=Physo144278;constitutive=1;ensembl_phase=2;rank=3 scaffold_176 ensembl protein_coding_gene 12173 12567 . + . ID=Physo144279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1760002;logic_name=jgi_physo1_1 scaffold_176 ensembl transcript 12173 12567 . + . ID=Physo144279;Parent=Physo144279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_176 . CDS 12173 12387 . + 0 ID=Physo144279;Parent=Physo144279;rank=1 scaffold_176 . exon 12173 12387 . + . ID=Physo144279.1;Parent=Physo144279;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_176 . CDS 12480 12567 . + 0 ID=Physo144279;Parent=Physo144279;rank=2 scaffold_176 . exon 12480 12567 . + . ID=Physo144279.2;Parent=Physo144279;constitutive=1;ensembl_phase=2;rank=2 scaffold_176 ensembl protein_coding_gene 15877 20904 . - . ID=Physo144280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1760003;logic_name=jgi_physo1_1 scaffold_176 ensembl transcript 15877 20904 . - . ID=Physo144280;Parent=Physo144280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_176 . CDS 15877 15883 . - 0 ID=Physo144280;Parent=Physo144280;rank=5 scaffold_176 . exon 15877 15883 . - . ID=Physo144280.5;Parent=Physo144280;constitutive=1;ensembl_phase=2;rank=5 scaffold_176 . CDS 15924 16655 . - 0 ID=Physo144280;Parent=Physo144280;rank=4 scaffold_176 . exon 15924 16655 . - . ID=Physo144280.4;Parent=Physo144280;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_176 . CDS 16835 18630 . - 0 ID=Physo144280;Parent=Physo144280;rank=3 scaffold_176 . exon 16835 18630 . - . ID=Physo144280.3;Parent=Physo144280;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_176 . CDS 18686 19813 . - 0 ID=Physo144280;Parent=Physo144280;rank=2 scaffold_176 . exon 18686 19813 . - . ID=Physo144280.2;Parent=Physo144280;constitutive=1;rank=2 scaffold_176 . CDS 20212 20904 . - 0 ID=Physo144280;Parent=Physo144280;rank=1 scaffold_176 . repeat_region 20058 20127 . - . description=GypsyPi-1c_I-int scaffold_176 . repeat_region 20098 20105 . ? . description=dust scaffold_176 . repeat_region 26700 26733 . ? . description=trf scaffold_176 . repeat_region 27348 27383 . ? . description=trf scaffold_176 . repeat_region 27360 27404 . ? . description=trf scaffold_176 . repeat_region 28790 28799 . ? . description=dust scaffold_176 . exon 20212 20904 . - . ID=Physo144280.1;Parent=Physo144280;constitutive=1;rank=1 scaffold_176 . biological_region 32478 32482 0.999 + . logic_name=eponine scaffold_176 . biological_region 32521 32521 0.999 + . logic_name=eponine scaffold_176 . biological_region 32535 32538 0.999 + . logic_name=eponine scaffold_176 . biological_region 32558 32566 0.999 + . logic_name=eponine scaffold_176 . biological_region 32570 32574 0.999 - . logic_name=eponine scaffold_176 . biological_region 32625 32629 0.999 + . logic_name=eponine scaffold_176 . biological_region 32662 32667 0.999 - . logic_name=eponine scaffold_176 . biological_region 32691 32697 0.999 - . logic_name=eponine scaffold_176 . biological_region 32715 32720 0.999 + . logic_name=eponine scaffold_176 . biological_region 32740 32744 0.999 - . logic_name=eponine scaffold_176 . biological_region 32749 32756 0.999 + . logic_name=eponine scaffold_176 . biological_region 32757 32760 0.999 - . logic_name=eponine scaffold_176 . biological_region 33810 33815 0.999 - . logic_name=eponine scaffold_176 . biological_region 33890 33890 0.999 + . logic_name=eponine scaffold_176 . biological_region 34168 34173 0.999 - . logic_name=eponine scaffold_176 . biological_region 34196 34198 0.999 + . logic_name=eponine scaffold_176 . biological_region 34363 34364 0.999 - . logic_name=eponine scaffold_176 . biological_region 34417 34419 0.999 + . logic_name=eponine scaffold_176 . biological_region 34682 34684 0.999 + . logic_name=eponine scaffold_176 . biological_region 36369 36371 0.999 + . logic_name=eponine scaffold_176 . biological_region 36389 36391 0.999 - . logic_name=eponine scaffold_176 . biological_region 36854 36857 0.999 + . logic_name=eponine scaffold_176 . biological_region 36858 36861 0.999 - . logic_name=eponine scaffold_176 . biological_region 36918 36918 0.999 + . logic_name=eponine scaffold_176 . biological_region 36943 36948 0.999 + . logic_name=eponine scaffold_176 . biological_region 36951 36956 0.999 - . logic_name=eponine scaffold_176 . biological_region 37035 37040 0.999 + . logic_name=eponine scaffold_176 . biological_region 37053 37058 0.999 - . logic_name=eponine scaffold_176 . biological_region 37477 37482 0.999 - . logic_name=eponine scaffold_176 . biological_region 37557 37557 0.999 + . logic_name=eponine scaffold_176 . biological_region 37835 37840 0.999 - . logic_name=eponine scaffold_176 . biological_region 37863 37865 0.999 + . logic_name=eponine scaffold_176 . biological_region 38030 38031 0.999 - . logic_name=eponine scaffold_176 . biological_region 38084 38086 0.999 + . logic_name=eponine scaffold_176 . biological_region 38447 38447 0.999 + . logic_name=eponine scaffold_176 . repeat_region 41081 41134 . ? . description=trf scaffold_176 . repeat_region 41084 41180 . ? . description=trf scaffold_176 . repeat_region 41084 41202 . ? . description=trf scaffold_176 . repeat_region 42206 42354 . ? . description=trf scaffold_176 . repeat_region 43374 43430 . ? . description=trf scaffold_176 . repeat_region 44292 44345 . ? . description=trf scaffold_176 . repeat_region 45392 45400 . ? . description=dust scaffold_176 . repeat_region 45790 45866 . ? . description=trf scaffold_176 . repeat_region 46009 46055 . ? . description=trf scaffold_176 ensembl protein_coding_gene 47927 49103 . - . ID=Physo124777;biotype=protein_coding;external_name=estExt_Genewise1.C_1760009;logic_name=jgi_physo1_1 scaffold_176 ensembl transcript 47927 49103 . - . ID=Physo124777;Parent=Physo124777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_176 . exon 47927 49103 . - . ID=Physo124777.1;Parent=Physo124777;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_176 . CDS 48342 49055 . - 0 ID=Physo124777;Parent=Physo124777;rank=1 scaffold_176 ensembl protein_coding_gene 43566 45083 . - . ID=Physo144281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1760004;logic_name=jgi_physo1_1 scaffold_176 ensembl transcript 43566 45083 . - . ID=Physo144281;Parent=Physo144281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_176 . CDS 43566 45083 . - 0 ID=Physo144281;Parent=Physo144281;rank=1 scaffold_176 . exon 43566 45083 . - . ID=Physo144281.1;Parent=Physo144281;constitutive=1;rank=1 scaffold_176 ensembl protein_coding_gene 46496 47331 . + . ID=Physo144282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1760005;logic_name=jgi_physo1_1 scaffold_176 ensembl transcript 46496 47331 . + . ID=Physo144282;Parent=Physo144282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_176 . CDS 46496 46503 . + 0 ID=Physo144282;Parent=Physo144282;rank=1 scaffold_176 . exon 46496 46503 . + . ID=Physo144282.1;Parent=Physo144282;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_176 . CDS 46612 46759 . + 0 ID=Physo144282;Parent=Physo144282;rank=2 scaffold_176 . exon 46612 46759 . + . ID=Physo144282.2;Parent=Physo144282;constitutive=1;ensembl_phase=2;rank=2 scaffold_176 . CDS 46886 47209 . + 0 ID=Physo144282;Parent=Physo144282;rank=3 scaffold_176 . exon 46886 47331 . + . ID=Physo144282.3;Parent=Physo144282;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_176 . biological_region 59342 59344 0.999 - . logic_name=eponine scaffold_176 . biological_region 59963 59968 0.999 + . logic_name=eponine scaffold_176 . repeat_region 60189 60198 . ? . description=dust scaffold_176 . repeat_region 60943 60953 . ? . description=dust scaffold_176 . repeat_region 61172 61182 . ? . description=dust scaffold_176 . repeat_region 62642 62688 . ? . description=trf scaffold_176 . repeat_region 66009 66017 . ? . description=dust scaffold_176 . repeat_region 66052 66060 . ? . description=dust scaffold_176 . repeat_region 66821 66829 . ? . description=dust scaffold_176 . repeat_region 66864 66872 . ? . description=dust scaffold_176 . repeat_region 66959 87027 . ? . description=dust scaffold_176 ensembl tRNA_gene 65435 65507 . - . ID=EPrPSOG00000000058;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_176 ensembl transcript 65435 65507 . - . ID=EPrPSOT00000000058;Parent=EPrPSOG00000000058;biotype=tRNA;logic_name=ncrna_eg scaffold_176 . exon 65435 65507 . - . ID=EPrPSOE00000000058;Parent=EPrPSOT00000000058;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_176 ensembl protein_coding_gene 61636 62028 . - . ID=Physo124778;biotype=protein_coding;external_name=estExt_Genewise1.C_1760010;logic_name=jgi_physo1_1 scaffold_176 ensembl transcript 61636 62028 . - . ID=Physo124778;Parent=Physo124778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_176 . exon 61636 62028 . - . ID=Physo124778.1;Parent=Physo124778;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_176 . CDS 61834 62010 . - 0 ID=Physo124778;Parent=Physo124778;rank=1 scaffold_176 . repeat_region 66959 87027 . ? . description=dust scaffold_176 . repeat_region 87028 88144 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_169 1 90362 scaffold_169 . biological_region 1189 1191 0.999 + . logic_name=eponine scaffold_169 . biological_region 4618 4618 0.999 + . logic_name=eponine scaffold_169 . repeat_region 4890 4908 . ? . description=dust scaffold_169 . repeat_region 9694 9719 . ? . description=trf scaffold_169 ensembl protein_coding_gene 17407 18052 . + . ID=Physo144136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690001;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 17407 18052 . + . ID=Physo144136;Parent=Physo144136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 17407 17858 . + 0 ID=Physo144136;Parent=Physo144136;rank=1 scaffold_169 . exon 17407 17858 . + . ID=Physo144136.1;Parent=Physo144136;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_169 . CDS 17893 18052 . + 0 ID=Physo144136;Parent=Physo144136;rank=2 scaffold_169 . exon 17893 18052 . + . ID=Physo144136.2;Parent=Physo144136;constitutive=1;ensembl_phase=2;rank=2 scaffold_169 . biological_region 21037 21038 0.999 + . logic_name=eponine scaffold_169 . repeat_region 22765 22827 . ? . description=dust scaffold_169 . repeat_region 24705 24918 . + . description=Polinton-1_PI scaffold_169 . repeat_region 26853 26874 . ? . description=dust scaffold_169 ensembl protein_coding_gene 20112 21122 . + . ID=Physo144137;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690002;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 20112 21122 . + . ID=Physo144137;Parent=Physo144137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 20112 21122 . + 0 ID=Physo144137;Parent=Physo144137;rank=1 scaffold_169 . exon 20112 21122 . + . ID=Physo144137.1;Parent=Physo144137;constitutive=1;rank=1 scaffold_169 ensembl protein_coding_gene 26390 26836 . - . ID=Physo144138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690003;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 26390 26836 . - . ID=Physo144138;Parent=Physo144138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 26390 26836 . - 0 ID=Physo144138;Parent=Physo144138;rank=1 scaffold_169 . exon 26390 26836 . - . ID=Physo144138.1;Parent=Physo144138;constitutive=1;rank=1 scaffold_169 ensembl protein_coding_gene 26995 31503 . - . ID=Physo158883;biotype=protein_coding;external_name=C_scaffold_169000001;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 26995 31503 . - . ID=Physo158883;Parent=Physo158883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 26995 28180 . - 0 ID=Physo158883;Parent=Physo158883;rank=6 scaffold_169 . exon 26995 28180 . - . ID=Physo158883.6;Parent=Physo158883;constitutive=1;ensembl_phase=2;rank=6 scaffold_169 . CDS 28217 28435 . - 0 ID=Physo158883;Parent=Physo158883;rank=5 scaffold_169 . CDS 28628 28770 . - 0 ID=Physo158883;Parent=Physo158883;rank=4 scaffold_169 . CDS 28900 29198 . - 0 ID=Physo158883;Parent=Physo158883;rank=3 scaffold_169 . CDS 29256 29561 . - 0 ID=Physo158883;Parent=Physo158883;rank=2 scaffold_169 . CDS 30162 31503 . - 0 ID=Physo158883;Parent=Physo158883;rank=1 scaffold_169 . repeat_region 30336 31093 . ? . description=trf scaffold_169 ensembl protein_coding_gene 32975 35617 . + . ID=Physo144141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690006;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 32975 35617 . + . ID=Physo144141;Parent=Physo144141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 32975 35617 . + 0 ID=Physo144141;Parent=Physo144141;rank=1 scaffold_169 . exon 32975 35617 . + . ID=Physo144141.1;Parent=Physo144141;constitutive=1;rank=1 scaffold_169 . exon 28217 28435 . - . ID=Physo158883.5;Parent=Physo158883;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_169 . exon 28628 28770 . - . ID=Physo158883.4;Parent=Physo158883;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_169 . exon 28900 29198 . - . ID=Physo158883.3;Parent=Physo158883;constitutive=1;ensembl_phase=1;rank=3 scaffold_169 . exon 29256 29561 . - . ID=Physo158883.2;Parent=Physo158883;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_169 . exon 30162 31503 . - . ID=Physo158883.1;Parent=Physo158883;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_169 ensembl protein_coding_gene 31658 32246 . + . ID=Physo158884;biotype=protein_coding;external_name=C_scaffold_169000002;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 31658 32246 . + . ID=Physo158884;Parent=Physo158884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 31658 31777 . + 0 ID=Physo158884;Parent=Physo158884;rank=1 scaffold_169 . exon 31658 31777 . + . ID=Physo158884.1;Parent=Physo158884;constitutive=1;rank=1 scaffold_169 . CDS 31851 31892 . + 0 ID=Physo158884;Parent=Physo158884;rank=2 scaffold_169 . exon 31851 31892 . + . ID=Physo158884.2;Parent=Physo158884;constitutive=1;rank=2 scaffold_169 . CDS 31964 32038 . + 0 ID=Physo158884;Parent=Physo158884;rank=3 scaffold_169 . exon 31964 32038 . + . ID=Physo158884.3;Parent=Physo158884;constitutive=1;rank=3 scaffold_169 . CDS 32115 32246 . + 0 ID=Physo158884;Parent=Physo158884;rank=4 scaffold_169 . exon 32115 32246 . + . ID=Physo158884.4;Parent=Physo158884;constitutive=1;rank=4 scaffold_169 . repeat_region 36753 36761 . ? . description=dust scaffold_169 . biological_region 39988 39988 0.999 + . logic_name=eponine scaffold_169 . biological_region 40687 40693 0.999 - . logic_name=eponine scaffold_169 . biological_region 41908 41910 0.999 - . logic_name=eponine scaffold_169 . biological_region 44152 44157 0.999 + . logic_name=eponine scaffold_169 . biological_region 44237 44243 0.999 - . logic_name=eponine scaffold_169 . biological_region 44413 44418 0.999 + . logic_name=eponine scaffold_169 . biological_region 44484 44492 0.999 + . logic_name=eponine scaffold_169 . biological_region 44592 44595 0.999 - . logic_name=eponine scaffold_169 . biological_region 44614 44619 0.999 + . logic_name=eponine scaffold_169 . biological_region 44652 44657 0.999 - . logic_name=eponine scaffold_169 . biological_region 44687 44688 0.999 + . logic_name=eponine scaffold_169 . biological_region 44759 44759 0.999 - . logic_name=eponine scaffold_169 . biological_region 44779 44785 0.999 - . logic_name=eponine scaffold_169 . biological_region 44801 44803 0.999 - . logic_name=eponine scaffold_169 ensembl protein_coding_gene 38973 39613 . + . ID=Physo109614;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1690001;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 38973 39613 . + . ID=Physo109614;Parent=Physo109614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 38973 39451 . + 0 ID=Physo109614;Parent=Physo109614;rank=1 scaffold_169 . exon 38973 39451 . + . ID=Physo109614.1;Parent=Physo109614;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_169 . CDS 39526 39613 . + 0 ID=Physo109614;Parent=Physo109614;rank=2 scaffold_169 . exon 39526 39613 . + . ID=Physo109614.2;Parent=Physo109614;constitutive=1;ensembl_phase=2;rank=2 scaffold_169 ensembl protein_coding_gene 39823 40552 . - . ID=Physo109615;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1690002;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 39823 40552 . - . ID=Physo109615;Parent=Physo109615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 39823 39864 . - 0 ID=Physo109615;Parent=Physo109615;rank=3 scaffold_169 . exon 39823 39864 . - . ID=Physo109615.3;Parent=Physo109615;constitutive=1;rank=3 scaffold_169 . CDS 39898 40402 . - 0 ID=Physo109615;Parent=Physo109615;rank=2 scaffold_169 . exon 39898 40402 . - . ID=Physo109615.2;Parent=Physo109615;constitutive=1;ensembl_phase=2;rank=2 scaffold_169 . CDS 40500 40552 . - 0 ID=Physo109615;Parent=Physo109615;rank=1 scaffold_169 . exon 40500 40552 . - . ID=Physo109615.1;Parent=Physo109615;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_169 ensembl protein_coding_gene 42510 44263 . - . ID=Physo109616;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1690003;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 42510 44263 . - . ID=Physo109616;Parent=Physo109616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . exon 42510 44263 . - . ID=Physo109616.1;Parent=Physo109616;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_169 . CDS 42608 44263 . - 0 ID=Physo109616;Parent=Physo109616;rank=1 scaffold_169 ensembl protein_coding_gene 36930 38733 . + . ID=Physo144142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690007;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 36930 38733 . + . ID=Physo144142;Parent=Physo144142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 36930 37172 . + 0 ID=Physo144142;Parent=Physo144142;rank=1 scaffold_169 . exon 36930 37172 . + . ID=Physo144142.1;Parent=Physo144142;constitutive=1;rank=1 scaffold_169 . CDS 37384 38733 . + 0 ID=Physo144142;Parent=Physo144142;rank=2 scaffold_169 . exon 37384 38733 . + . ID=Physo144142.2;Parent=Physo144142;constitutive=1;rank=2 scaffold_169 ensembl protein_coding_gene 40808 42049 . + . ID=Physo144145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690010;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 40808 42049 . + . ID=Physo144145;Parent=Physo144145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 40808 42049 . + 0 ID=Physo144145;Parent=Physo144145;rank=1 scaffold_169 . exon 40808 42049 . + . ID=Physo144145.1;Parent=Physo144145;constitutive=1;rank=1 scaffold_169 . repeat_region 49376 49423 . + . description=GypsyPi-1c_I-int scaffold_169 . repeat_region 49384 49693 . ? . description=trf scaffold_169 . repeat_region 49442 49694 . ? . description=trf scaffold_169 ensembl protein_coding_gene 49257 49998 . + . ID=Physo109617;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1690004;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 49257 49998 . + . ID=Physo109617;Parent=Physo109617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . exon 49257 49998 . + . ID=Physo109617.1;Parent=Physo109617;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_169 . CDS 49265 49708 . + 0 ID=Physo109617;Parent=Physo109617;rank=1 scaffold_169 ensembl protein_coding_gene 46561 48562 . + . ID=Physo144147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690012;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 46561 48562 . + . ID=Physo144147;Parent=Physo144147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 46561 46971 . + 0 ID=Physo144147;Parent=Physo144147;rank=1 scaffold_169 . exon 46561 46971 . + . ID=Physo144147.1;Parent=Physo144147;constitutive=1;rank=1 scaffold_169 . CDS 47048 48562 . + 0 ID=Physo144147;Parent=Physo144147;rank=2 scaffold_169 . exon 47048 48562 . + . ID=Physo144147.2;Parent=Physo144147;constitutive=1;rank=2 scaffold_169 ensembl protein_coding_gene 50569 53227 . - . ID=Physo144149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690014;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 50569 53227 . - . ID=Physo144149;Parent=Physo144149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . exon 50569 50997 . - . ID=Physo144149.5;Parent=Physo144149;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_169 . CDS 50902 50997 . - 0 ID=Physo144149;Parent=Physo144149;rank=5 scaffold_169 . CDS 51076 51170 . - 0 ID=Physo144149;Parent=Physo144149;rank=4 scaffold_169 . exon 51076 51170 . - . ID=Physo144149.4;Parent=Physo144149;constitutive=1;ensembl_phase=1;rank=4 scaffold_169 . CDS 51414 52752 . - 0 ID=Physo144149;Parent=Physo144149;rank=3 scaffold_169 . exon 51414 52752 . - . ID=Physo144149.3;Parent=Physo144149;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_169 . CDS 52833 52940 . - 0 ID=Physo144149;Parent=Physo144149;rank=2 scaffold_169 . exon 52833 52940 . - . ID=Physo144149.2;Parent=Physo144149;constitutive=1;rank=2 scaffold_169 . CDS 52985 53227 . - 0 ID=Physo144149;Parent=Physo144149;rank=1 scaffold_169 . exon 52985 53227 . - . ID=Physo144149.1;Parent=Physo144149;constitutive=1;rank=1 scaffold_169 . biological_region 56340 56343 0.999 - . logic_name=eponine scaffold_169 . biological_region 59396 59398 0.999 + . logic_name=eponine scaffold_169 . biological_region 59470 59471 0.999 + . logic_name=eponine scaffold_169 . biological_region 59689 59692 0.999 + . logic_name=eponine scaffold_169 . biological_region 59703 59704 0.999 + . logic_name=eponine scaffold_169 . biological_region 59710 59715 0.999 - . logic_name=eponine scaffold_169 . biological_region 59718 59722 0.999 + . logic_name=eponine scaffold_169 . biological_region 59884 59889 0.999 - . logic_name=eponine scaffold_169 . repeat_region 60156 60210 . ? . description=dust scaffold_169 . biological_region 61887 61891 0.999 + . logic_name=eponine scaffold_169 . biological_region 62144 62145 0.999 + . logic_name=eponine scaffold_169 . biological_region 62184 62188 0.999 + . logic_name=eponine scaffold_169 . biological_region 62188 62195 0.999 - . logic_name=eponine scaffold_169 . biological_region 62211 62214 0.999 + . logic_name=eponine scaffold_169 . biological_region 62215 62220 0.999 - . logic_name=eponine scaffold_169 . biological_region 62259 62260 0.999 - . logic_name=eponine scaffold_169 . biological_region 62309 62313 0.999 - . logic_name=eponine scaffold_169 . biological_region 62350 62353 0.999 - . logic_name=eponine scaffold_169 ensembl protein_coding_gene 54635 55006 . + . ID=Physo144150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690015;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 54635 55006 . + . ID=Physo144150;Parent=Physo144150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 54635 55006 . + 0 ID=Physo144150;Parent=Physo144150;rank=1 scaffold_169 . exon 54635 55006 . + . ID=Physo144150.1;Parent=Physo144150;constitutive=1;rank=1 scaffold_169 ensembl protein_coding_gene 55164 58487 . + . ID=Physo144151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690016;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 55164 58487 . + . ID=Physo144151;Parent=Physo144151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . exon 55164 58487 . + . ID=Physo144151.1;Parent=Physo144151;constitutive=1;ensembl_phase=-1;rank=1 scaffold_169 . CDS 55332 58487 . + 0 ID=Physo144151;Parent=Physo144151;rank=1 scaffold_169 ensembl protein_coding_gene 58783 60618 . + . ID=Physo144152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690017;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 58783 60618 . + . ID=Physo144152;Parent=Physo144152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 58783 58869 . + 0 ID=Physo144152;Parent=Physo144152;rank=1 scaffold_169 . exon 58783 58869 . + . ID=Physo144152.1;Parent=Physo144152;constitutive=1;rank=1 scaffold_169 . CDS 58989 59087 . + 0 ID=Physo144152;Parent=Physo144152;rank=2 scaffold_169 . exon 58989 59087 . + . ID=Physo144152.2;Parent=Physo144152;constitutive=1;rank=2 scaffold_169 . CDS 59305 60618 . + 0 ID=Physo144152;Parent=Physo144152;rank=3 scaffold_169 . exon 59305 60618 . + . ID=Physo144152.3;Parent=Physo144152;constitutive=1;rank=3 scaffold_169 ensembl protein_coding_gene 60778 62283 . - . ID=Physo144153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690018;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 60778 62283 . - . ID=Physo144153;Parent=Physo144153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 60778 62268 . - 0 ID=Physo144153;Parent=Physo144153;rank=1 scaffold_169 . exon 60778 62283 . - . ID=Physo144153.1;Parent=Physo144153;constitutive=1;ensembl_phase=-1;rank=1 scaffold_169 ensembl protein_coding_gene 63186 63756 . + . ID=Physo144154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690019;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 63186 63756 . + . ID=Physo144154;Parent=Physo144154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 63186 63325 . + 0 ID=Physo144154;Parent=Physo144154;rank=1 scaffold_169 . exon 63186 63325 . + . ID=Physo144154.1;Parent=Physo144154;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_169 . CDS 63414 63756 . + 0 ID=Physo144154;Parent=Physo144154;rank=2 scaffold_169 . repeat_region 63500 63535 . ? . description=trf scaffold_169 . repeat_region 63505 63535 . ? . description=trf scaffold_169 . repeat_region 63924 63943 . ? . description=trf scaffold_169 . repeat_region 64265 64319 . ? . description=trf scaffold_169 . repeat_region 64266 64319 . ? . description=trf scaffold_169 . repeat_region 64266 64326 . + . description=(CAGAG)n scaffold_169 . repeat_region 66667 66833 . ? . description=trf scaffold_169 . repeat_region 70768 70808 . ? . description=trf scaffold_169 . repeat_region 70968 71054 . ? . description=trf scaffold_169 . repeat_region 71093 71128 . ? . description=trf scaffold_169 . repeat_region 71098 71128 . ? . description=trf scaffold_169 . repeat_region 71517 71536 . ? . description=trf scaffold_169 . exon 63414 63756 . + . ID=Physo144154.2;Parent=Physo144154;constitutive=1;ensembl_phase=2;rank=2 scaffold_169 ensembl protein_coding_gene 70651 71349 . + . ID=Physo144155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690020;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 70651 71349 . + . ID=Physo144155;Parent=Physo144155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 70651 71349 . + 0 ID=Physo144155;Parent=Physo144155;rank=1 scaffold_169 . exon 70651 71349 . + . ID=Physo144155.1;Parent=Physo144155;constitutive=1;rank=1 scaffold_169 . repeat_region 71689 73577 . ? . description=dust scaffold_169 . repeat_region 76298 76347 . ? . description=dust scaffold_169 . repeat_region 77905 78116 . + . description=Sola3-2_PS scaffold_169 . repeat_region 78756 79130 . ? . description=dust scaffold_169 . repeat_region 80597 80774 . ? . description=dust scaffold_169 ensembl protein_coding_gene 75682 76487 . + . ID=Physo144156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690021;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 75682 76487 . + . ID=Physo144156;Parent=Physo144156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 75682 76292 . + 0 ID=Physo144156;Parent=Physo144156;rank=1 scaffold_169 . exon 75682 76292 . + . ID=Physo144156.1;Parent=Physo144156;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_169 . CDS 76424 76487 . + 0 ID=Physo144156;Parent=Physo144156;rank=2 scaffold_169 . exon 76424 76487 . + . ID=Physo144156.2;Parent=Physo144156;constitutive=1;ensembl_phase=2;rank=2 scaffold_169 ensembl protein_coding_gene 77112 78668 . + . ID=Physo144157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690022;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 77112 78668 . + . ID=Physo144157;Parent=Physo144157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 77112 78668 . + 0 ID=Physo144157;Parent=Physo144157;rank=1 scaffold_169 . exon 77112 78668 . + . ID=Physo144157.1;Parent=Physo144157;constitutive=1;rank=1 scaffold_169 . repeat_region 81708 81743 . ? . description=trf scaffold_169 . repeat_region 81780 82006 . ? . description=trf scaffold_169 . repeat_region 82031 82111 . ? . description=trf scaffold_169 ensembl protein_coding_gene 88983 89369 . + . ID=Physo144158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1690023;logic_name=jgi_physo1_1 scaffold_169 ensembl transcript 88983 89369 . + . ID=Physo144158;Parent=Physo144158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_169 . CDS 88983 89369 . + 0 ID=Physo144158;Parent=Physo144158;rank=1 scaffold_169 . exon 88983 89369 . + . ID=Physo144158.1;Parent=Physo144158;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_170 1 90966 scaffold_170 . biological_region 665 668 0.999 - . logic_name=eponine scaffold_170 . biological_region 1621 1626 0.999 - . logic_name=eponine scaffold_170 . repeat_region 2167 2247 . ? . description=trf scaffold_170 . repeat_region 2167 2256 . ? . description=trf scaffold_170 . repeat_region 2364 2413 . ? . description=trf scaffold_170 . repeat_region 2480 2535 . ? . description=trf scaffold_170 ensembl protein_coding_gene 8601 9119 . + . ID=Physo144159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700001;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 8601 9119 . + . ID=Physo144159;Parent=Physo144159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 8601 9119 . + 0 ID=Physo144159;Parent=Physo144159;rank=1 scaffold_170 . exon 8601 9119 . + . ID=Physo144159.1;Parent=Physo144159;constitutive=1;rank=1 scaffold_170 . repeat_region 17540 17547 . ? . description=dust scaffold_170 ensembl protein_coding_gene 12296 13558 . + . ID=Physo109618;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1700001;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 12296 13558 . + . ID=Physo109618;Parent=Physo109618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 12296 13558 . + 0 ID=Physo109618;Parent=Physo109618;rank=1 scaffold_170 . exon 12296 13558 . + . ID=Physo109618.1;Parent=Physo109618;constitutive=1;rank=1 scaffold_170 ensembl protein_coding_gene 13771 14883 . - . ID=Physo144161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700003;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 13771 14883 . - . ID=Physo144161;Parent=Physo144161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 13771 14226 . - 0 ID=Physo144161;Parent=Physo144161;rank=2 scaffold_170 . exon 13771 14226 . - . ID=Physo144161.2;Parent=Physo144161;constitutive=1;rank=2 scaffold_170 . CDS 14257 14883 . - 0 ID=Physo144161;Parent=Physo144161;rank=1 scaffold_170 . exon 14257 14883 . - . ID=Physo144161.1;Parent=Physo144161;constitutive=1;rank=1 scaffold_170 . repeat_region 19557 19609 . ? . description=trf scaffold_170 . repeat_region 19571 19620 . ? . description=trf scaffold_170 . biological_region 20053 20054 0.999 - . logic_name=eponine scaffold_170 . biological_region 25016 25018 0.999 + . logic_name=eponine scaffold_170 . biological_region 26979 26981 0.999 + . logic_name=eponine scaffold_170 . repeat_region 28837 29190 . - . description=Polinton-1_PI scaffold_170 . repeat_region 36052 36060 . ? . description=dust scaffold_170 ensembl protein_coding_gene 31297 32752 . - . ID=Physo144162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700004;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 31297 32752 . - . ID=Physo144162;Parent=Physo144162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 31297 32173 . - 0 ID=Physo144162;Parent=Physo144162;rank=2 scaffold_170 . exon 31297 32173 . - . ID=Physo144162.2;Parent=Physo144162;constitutive=1;ensembl_phase=2;rank=2 scaffold_170 . CDS 32316 32752 . - 0 ID=Physo144162;Parent=Physo144162;rank=1 scaffold_170 . exon 32316 32752 . - . ID=Physo144162.1;Parent=Physo144162;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_170 ensembl protein_coding_gene 36302 38548 . + . ID=Physo144163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700005;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 36302 38548 . + . ID=Physo144163;Parent=Physo144163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 36302 36622 . + 0 ID=Physo144163;Parent=Physo144163;rank=1 scaffold_170 . exon 36302 36622 . + . ID=Physo144163.1;Parent=Physo144163;constitutive=1;rank=1 scaffold_170 . CDS 36702 36888 . + 0 ID=Physo144163;Parent=Physo144163;rank=2 scaffold_170 . CDS 36948 38548 . + 0 ID=Physo144163;Parent=Physo144163;rank=3 scaffold_170 . biological_region 38458 38461 0.999 + . logic_name=eponine scaffold_170 . biological_region 44604 44605 0.999 - . logic_name=eponine scaffold_170 . biological_region 44869 44871 0.999 - . logic_name=eponine scaffold_170 . biological_region 44927 44928 0.999 - . logic_name=eponine scaffold_170 . exon 36702 36888 . + . ID=Physo144163.2;Parent=Physo144163;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_170 . exon 36948 38548 . + . ID=Physo144163.3;Parent=Physo144163;constitutive=1;ensembl_phase=1;rank=3 scaffold_170 ensembl protein_coding_gene 39670 41521 . + . ID=Physo144164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700006;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 39670 41521 . + . ID=Physo144164;Parent=Physo144164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 39670 40545 . + 0 ID=Physo144164;Parent=Physo144164;rank=1 scaffold_170 . exon 39670 40545 . + . ID=Physo144164.1;Parent=Physo144164;constitutive=1;rank=1 scaffold_170 . CDS 40856 40991 . + 0 ID=Physo144164;Parent=Physo144164;rank=2 scaffold_170 . exon 40856 40991 . + . ID=Physo144164.2;Parent=Physo144164;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_170 . CDS 41036 41334 . + 0 ID=Physo144164;Parent=Physo144164;rank=3 scaffold_170 . exon 41036 41334 . + . ID=Physo144164.3;Parent=Physo144164;constitutive=1;ensembl_phase=1;rank=3 scaffold_170 . CDS 41417 41521 . + 0 ID=Physo144164;Parent=Physo144164;rank=4 scaffold_170 . exon 41417 41521 . + . ID=Physo144164.4;Parent=Physo144164;constitutive=1;rank=4 scaffold_170 . repeat_region 45655 45663 . ? . description=dust scaffold_170 . repeat_region 47202 47211 . ? . description=dust scaffold_170 . repeat_region 49093 49100 . ? . description=dust scaffold_170 . repeat_region 51583 51609 . ? . description=dust scaffold_170 . repeat_region 52635 52646 . ? . description=dust scaffold_170 . repeat_region 52683 52690 . ? . description=dust scaffold_170 . biological_region 55580 55584 0.999 - . logic_name=eponine scaffold_170 . repeat_region 56748 56783 . ? . description=trf scaffold_170 . repeat_region 63344 63371 . ? . description=trf scaffold_170 ensembl protein_coding_gene 58012 58444 . + . ID=Physo144165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700007;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 58012 58444 . + . ID=Physo144165;Parent=Physo144165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 58012 58054 . + 0 ID=Physo144165;Parent=Physo144165;rank=1 scaffold_170 . exon 58012 58054 . + . ID=Physo144165.1;Parent=Physo144165;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_170 . CDS 58158 58444 . + 0 ID=Physo144165;Parent=Physo144165;rank=2 scaffold_170 . exon 58158 58444 . + . ID=Physo144165.2;Parent=Physo144165;constitutive=1;ensembl_phase=1;rank=2 scaffold_170 ensembl protein_coding_gene 63036 63398 . + . ID=Physo144166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700008;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 63036 63398 . + . ID=Physo144166;Parent=Physo144166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 63036 63398 . + 0 ID=Physo144166;Parent=Physo144166;rank=1 scaffold_170 . exon 63036 63398 . + . ID=Physo144166.1;Parent=Physo144166;constitutive=1;rank=1 scaffold_170 ensembl protein_coding_gene 65155 65685 . - . ID=Physo144167;biotype=protein_coding;description=PsAvh249 [Source:UniProtKB/TrEMBL%3BAcc:E0W5Q2];external_name=estExt_fgenesh1_pg.C_1700009;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 65155 65685 . - . ID=Physo144167;Parent=Physo144167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 65155 65685 . - 0 ID=Physo144167;Parent=Physo144167;rank=1 scaffold_170 . exon 65155 65685 . - . ID=Physo144167.1;Parent=Physo144167;constitutive=1;rank=1 scaffold_170 ensembl protein_coding_gene 71036 72258 . + . ID=Physo144168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700010;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 71036 72258 . + . ID=Physo144168;Parent=Physo144168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 71036 72202 . + 0 ID=Physo144168;Parent=Physo144168;rank=1 scaffold_170 . exon 71036 72258 . + . ID=Physo144168.1;Parent=Physo144168;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_170 ensembl protein_coding_gene 72622 73433 . + . ID=Physo144169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700011;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 72622 73433 . + . ID=Physo144169;Parent=Physo144169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 72622 73247 . + 0 ID=Physo144169;Parent=Physo144169;rank=1 scaffold_170 . exon 72622 73247 . + . ID=Physo144169.1;Parent=Physo144169;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_170 . CDS 73427 73433 . + 0 ID=Physo144169;Parent=Physo144169;rank=2 scaffold_170 . repeat_region 76770 76800 . ? . description=trf scaffold_170 . repeat_region 78633 78660 . ? . description=dust scaffold_170 . biological_region 80323 80327 0.999 - . logic_name=eponine scaffold_170 . biological_region 80850 80854 0.999 - . logic_name=eponine scaffold_170 . exon 73427 73433 . + . ID=Physo144169.2;Parent=Physo144169;constitutive=1;ensembl_phase=2;rank=2 scaffold_170 ensembl protein_coding_gene 78871 80442 . + . ID=Physo144170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1700012;logic_name=jgi_physo1_1 scaffold_170 ensembl transcript 78871 80442 . + . ID=Physo144170;Parent=Physo144170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_170 . CDS 78871 80442 . + 0 ID=Physo144170;Parent=Physo144170;rank=1 scaffold_170 . exon 78871 80442 . + . ID=Physo144170.1;Parent=Physo144170;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_166 1 100995 scaffold_166 . repeat_region 248 256 . ? . description=dust scaffold_166 . biological_region 1375 1381 0.999 - . logic_name=eponine scaffold_166 . biological_region 1534 1535 0.999 - . logic_name=eponine scaffold_166 . repeat_region 3810 4007 . ? . description=dust scaffold_166 . repeat_region 4555 4562 . ? . description=dust scaffold_166 . repeat_region 6913 6920 . ? . description=dust scaffold_166 . repeat_region 6950 7123 . ? . description=dust scaffold_166 ensembl protein_coding_gene 2521 3017 . + . ID=Physo124583;biotype=protein_coding;external_name=estExt_Genewise1.C_1660001;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 2521 3017 . + . ID=Physo124583;Parent=Physo124583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . exon 2521 3017 . + . ID=Physo124583.1;Parent=Physo124583;constitutive=1;ensembl_phase=-1;rank=1 scaffold_166 . CDS 2835 3017 . + 0 ID=Physo124583;Parent=Physo124583;rank=1 scaffold_166 ensembl protein_coding_gene 825 1482 . + . ID=Physo144104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1660001;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 825 1482 . + . ID=Physo144104;Parent=Physo144104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . CDS 825 878 . + 0 ID=Physo144104;Parent=Physo144104;rank=1 scaffold_166 . exon 825 878 . + . ID=Physo144104.1;Parent=Physo144104;constitutive=1;rank=1 scaffold_166 . CDS 1039 1129 . + 0 ID=Physo144104;Parent=Physo144104;rank=2 scaffold_166 . exon 1039 1129 . + . ID=Physo144104.2;Parent=Physo144104;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_166 . CDS 1217 1482 . + 0 ID=Physo144104;Parent=Physo144104;rank=3 scaffold_166 . exon 1217 1482 . + . ID=Physo144104.3;Parent=Physo144104;constitutive=1;ensembl_phase=1;rank=3 scaffold_166 ensembl protein_coding_gene 11659 12114 . + . ID=Physo124584;biotype=protein_coding;external_name=estExt_Genewise1.C_1660002;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 11659 12114 . + . ID=Physo124584;Parent=Physo124584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . exon 11659 12114 . + . ID=Physo124584.1;Parent=Physo124584;constitutive=1;ensembl_phase=-1;rank=1 scaffold_166 . CDS 11674 12114 . + 0 ID=Physo124584;Parent=Physo124584;rank=1 scaffold_166 . repeat_region 12392 25249 . ? . description=dust scaffold_166 . repeat_region 25250 30727 . ? . description=dust scaffold_166 . repeat_region 30731 31491 . - . description=GypsyPi-1c_I-int scaffold_166 . biological_region 30969 30972 0.999 + . logic_name=eponine scaffold_166 . biological_region 30987 30991 0.999 - . logic_name=eponine scaffold_166 . biological_region 31247 31248 0.999 - . logic_name=eponine scaffold_166 . repeat_region 31492 31796 . - . description=GypsyPi-1c_LTR scaffold_166 . biological_region 32051 32055 0.999 - . logic_name=eponine scaffold_166 ensembl protein_coding_gene 33510 33874 . + . ID=Physo144107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1660004;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 33510 33874 . + . ID=Physo144107;Parent=Physo144107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . CDS 33510 33598 . + 0 ID=Physo144107;Parent=Physo144107;rank=1 scaffold_166 . exon 33510 33598 . + . ID=Physo144107.1;Parent=Physo144107;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_166 . CDS 33631 33874 . + 0 ID=Physo144107;Parent=Physo144107;rank=2 scaffold_166 . exon 33631 33874 . + . ID=Physo144107.2;Parent=Physo144107;constitutive=1;ensembl_phase=2;rank=2 scaffold_166 ensembl protein_coding_gene 34989 36326 . - . ID=Physo144108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1660005;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 34989 36326 . - . ID=Physo144108;Parent=Physo144108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . exon 34989 35389 . - . ID=Physo144108.6;Parent=Physo144108;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_166 . CDS 35256 35389 . - 0 ID=Physo144108;Parent=Physo144108;rank=6 scaffold_166 . CDS 35467 35562 . - 0 ID=Physo144108;Parent=Physo144108;rank=5 scaffold_166 . exon 35467 35562 . - . ID=Physo144108.5;Parent=Physo144108;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_166 . CDS 35621 35694 . - 0 ID=Physo144108;Parent=Physo144108;rank=4 scaffold_166 . exon 35621 35694 . - . ID=Physo144108.4;Parent=Physo144108;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_166 . CDS 35741 35924 . - 0 ID=Physo144108;Parent=Physo144108;rank=3 scaffold_166 . exon 35741 35924 . - . ID=Physo144108.3;Parent=Physo144108;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_166 . CDS 35947 36121 . - 0 ID=Physo144108;Parent=Physo144108;rank=2 scaffold_166 . exon 35947 36121 . - . ID=Physo144108.2;Parent=Physo144108;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_166 . CDS 36150 36326 . - 0 ID=Physo144108;Parent=Physo144108;rank=1 scaffold_166 . exon 36150 36326 . - . ID=Physo144108.1;Parent=Physo144108;constitutive=1;rank=1 scaffold_166 . repeat_region 37015 37104 . ? . description=trf scaffold_166 . repeat_region 37219 37315 . ? . description=trf scaffold_166 . repeat_region 37377 37419 . ? . description=trf scaffold_166 . repeat_region 38473 38480 . ? . description=dust scaffold_166 . repeat_region 38824 38834 . ? . description=dust scaffold_166 . repeat_region 40234 40283 . ? . description=dust scaffold_166 . repeat_region 41190 41239 . ? . description=dust scaffold_166 . repeat_region 43427 43531 . ? . description=dust scaffold_166 ensembl protein_coding_gene 36860 37365 . + . ID=Physo144109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1660006;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 36860 37365 . + . ID=Physo144109;Parent=Physo144109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . CDS 36860 36886 . + 0 ID=Physo144109;Parent=Physo144109;rank=1 scaffold_166 . exon 36860 36886 . + . ID=Physo144109.1;Parent=Physo144109;constitutive=1;rank=1 scaffold_166 . CDS 36979 37099 . + 0 ID=Physo144109;Parent=Physo144109;rank=2 scaffold_166 . exon 36979 37099 . + . ID=Physo144109.2;Parent=Physo144109;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_166 . CDS 37184 37365 . + 0 ID=Physo144109;Parent=Physo144109;rank=3 scaffold_166 . exon 37184 37365 . + . ID=Physo144109.3;Parent=Physo144109;constitutive=1;ensembl_phase=1;rank=3 scaffold_166 ensembl protein_coding_gene 41646 44717 . - . ID=Physo144110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1660007;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 41646 44717 . - . ID=Physo144110;Parent=Physo144110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . CDS 41646 42190 . - 0 ID=Physo144110;Parent=Physo144110;rank=8 scaffold_166 . exon 41646 42190 . - . ID=Physo144110.8;Parent=Physo144110;constitutive=1;ensembl_phase=1;rank=8 scaffold_166 . CDS 42440 42478 . - 0 ID=Physo144110;Parent=Physo144110;rank=7 scaffold_166 . exon 42440 42478 . - . ID=Physo144110.7;Parent=Physo144110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_166 . CDS 42628 42923 . - 0 ID=Physo144110;Parent=Physo144110;rank=6 scaffold_166 . exon 42628 42923 . - . ID=Physo144110.6;Parent=Physo144110;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_166 . CDS 43009 43106 . - 0 ID=Physo144110;Parent=Physo144110;rank=5 scaffold_166 . exon 43009 43106 . - . ID=Physo144110.5;Parent=Physo144110;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_166 . CDS 43219 43368 . - 0 ID=Physo144110;Parent=Physo144110;rank=4 scaffold_166 . exon 43219 43368 . - . ID=Physo144110.4;Parent=Physo144110;constitutive=1;rank=4 scaffold_166 . CDS 43605 43855 . - 0 ID=Physo144110;Parent=Physo144110;rank=3 scaffold_166 . exon 43605 43855 . - . ID=Physo144110.3;Parent=Physo144110;constitutive=1;ensembl_phase=1;rank=3 scaffold_166 . CDS 43906 44129 . - 0 ID=Physo144110;Parent=Physo144110;rank=2 scaffold_166 . exon 43906 44129 . - . ID=Physo144110.2;Parent=Physo144110;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_166 . CDS 44161 44717 . - 0 ID=Physo144110;Parent=Physo144110;rank=1 scaffold_166 . exon 44161 44717 . - . ID=Physo144110.1;Parent=Physo144110;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_166 . biological_region 52096 52096 0.999 - . logic_name=eponine scaffold_166 . repeat_region 52645 64743 . ? . description=dust scaffold_166 . biological_region 66335 66341 0.999 + . logic_name=eponine scaffold_166 . biological_region 66720 66723 0.999 + . logic_name=eponine scaffold_166 . repeat_region 68781 68823 . ? . description=trf scaffold_166 . repeat_region 70531 70989 . - . description=GypsyPi-1c_I-int scaffold_166 ensembl protein_coding_gene 66313 66978 . - . ID=Physo144111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1660008;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 66313 66978 . - . ID=Physo144111;Parent=Physo144111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . CDS 66313 66433 . - 0 ID=Physo144111;Parent=Physo144111;rank=4 scaffold_166 . exon 66313 66433 . - . ID=Physo144111.4;Parent=Physo144111;constitutive=1;ensembl_phase=2;rank=4 scaffold_166 . CDS 66659 66768 . - 0 ID=Physo144111;Parent=Physo144111;rank=3 scaffold_166 . exon 66659 66768 . - . ID=Physo144111.3;Parent=Physo144111;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_166 . CDS 66828 66908 . - 0 ID=Physo144111;Parent=Physo144111;rank=2 scaffold_166 . exon 66828 66908 . - . ID=Physo144111.2;Parent=Physo144111;constitutive=1;rank=2 scaffold_166 . CDS 66931 66978 . - 0 ID=Physo144111;Parent=Physo144111;rank=1 scaffold_166 . exon 66931 66978 . - . ID=Physo144111.1;Parent=Physo144111;constitutive=1;rank=1 scaffold_166 ensembl protein_coding_gene 70025 72783 . - . ID=Physo144112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1660009;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 70025 72783 . - . ID=Physo144112;Parent=Physo144112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . CDS 70025 70420 . - 0 ID=Physo144112;Parent=Physo144112;rank=3 scaffold_166 . exon 70025 70420 . - . ID=Physo144112.3;Parent=Physo144112;constitutive=1;rank=3 scaffold_166 . CDS 70496 71485 . - 0 ID=Physo144112;Parent=Physo144112;rank=2 scaffold_166 . exon 70496 71485 . - . ID=Physo144112.2;Parent=Physo144112;constitutive=1;rank=2 scaffold_166 . CDS 71644 72783 . - 0 ID=Physo144112;Parent=Physo144112;rank=1 scaffold_166 . exon 71644 72783 . - . ID=Physo144112.1;Parent=Physo144112;constitutive=1;rank=1 scaffold_166 . repeat_region 74040 74082 . ? . description=dust scaffold_166 . repeat_region 76507 76556 . ? . description=dust scaffold_166 . repeat_region 81882 82334 . ? . description=dust scaffold_166 ensembl protein_coding_gene 73910 76504 . + . ID=Physo144113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1660010;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 73910 76504 . + . ID=Physo144113;Parent=Physo144113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . CDS 73910 74619 . + 0 ID=Physo144113;Parent=Physo144113;rank=1 scaffold_166 . exon 73910 74619 . + . ID=Physo144113.1;Parent=Physo144113;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_166 . CDS 74970 76334 . + 0 ID=Physo144113;Parent=Physo144113;rank=2 scaffold_166 . exon 74970 76334 . + . ID=Physo144113.2;Parent=Physo144113;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_166 . CDS 76400 76424 . + 0 ID=Physo144113;Parent=Physo144113;rank=3 scaffold_166 . exon 76400 76504 . + . ID=Physo144113.3;Parent=Physo144113;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_166 ensembl protein_coding_gene 76997 78647 . + . ID=Physo144114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1660011;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 76997 78647 . + . ID=Physo144114;Parent=Physo144114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . CDS 76997 78485 . + 0 ID=Physo144114;Parent=Physo144114;rank=1 scaffold_166 . exon 76997 78485 . + . ID=Physo144114.1;Parent=Physo144114;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_166 . CDS 78538 78647 . + 0 ID=Physo144114;Parent=Physo144114;rank=2 scaffold_166 . exon 78538 78647 . + . ID=Physo144114.2;Parent=Physo144114;constitutive=1;ensembl_phase=1;rank=2 scaffold_166 . biological_region 84078 84078 0.999 + . logic_name=eponine scaffold_166 . biological_region 89756 89760 0.999 + . logic_name=eponine scaffold_166 . biological_region 89854 89857 0.999 + . logic_name=eponine scaffold_166 . biological_region 89888 89892 0.999 - . logic_name=eponine scaffold_166 ensembl protein_coding_gene 86450 87168 . + . ID=Physo124591;biotype=protein_coding;external_name=estExt_Genewise1.C_1660009;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 86450 87168 . + . ID=Physo124591;Parent=Physo124591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . exon 86450 86762 . + . ID=Physo124591.1;Parent=Physo124591;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_166 . CDS 86573 86762 . + 0 ID=Physo124591;Parent=Physo124591;rank=1 scaffold_166 . CDS 86795 87168 . + 0 ID=Physo124591;Parent=Physo124591;rank=2 scaffold_166 . exon 86795 87168 . + . ID=Physo124591.2;Parent=Physo124591;constitutive=1;ensembl_phase=1;rank=2 scaffold_166 ensembl protein_coding_gene 87520 87774 . + . ID=Physo124592;biotype=protein_coding;external_name=estExt_Genewise1.C_1660010;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 87520 87774 . + . ID=Physo124592;Parent=Physo124592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . exon 87520 87774 . + . ID=Physo124592.1;Parent=Physo124592;constitutive=1;ensembl_phase=-1;rank=1 scaffold_166 . CDS 87637 87774 . + 0 ID=Physo124592;Parent=Physo124592;rank=1 scaffold_166 ensembl protein_coding_gene 88182 88337 . + . ID=Physo124593;biotype=protein_coding;external_name=estExt_Genewise1.C_1660011;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 88182 88337 . + . ID=Physo124593;Parent=Physo124593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . exon 88182 88337 . + . ID=Physo124593.1;Parent=Physo124593;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_166 . CDS 88184 88336 . + 0 ID=Physo124593;Parent=Physo124593;rank=1 scaffold_166 . repeat_region 93474 93948 . ? . description=dust scaffold_166 . repeat_region 94234 94791 . + . description=GypsyPi-1c_I-int scaffold_166 . repeat_region 94890 95018 . + . description=GypsyPi-1c_I-int scaffold_166 . repeat_region 96404 96415 . ? . description=dust scaffold_166 . repeat_region 97572 97581 . ? . description=dust scaffold_166 . repeat_region 99015 99072 . ? . description=trf scaffold_166 . repeat_region 99097 99163 . ? . description=trf scaffold_166 . repeat_region 99098 99151 . ? . description=trf scaffold_166 . repeat_region 99101 99188 . ? . description=dust scaffold_166 . repeat_region 99426 99469 . ? . description=trf scaffold_166 . repeat_region 99437 99469 . ? . description=trf scaffold_166 . repeat_region 99495 99531 . ? . description=trf scaffold_166 . repeat_region 99495 99545 . ? . description=trf scaffold_166 . repeat_region 99911 100005 . ? . description=trf scaffold_166 . repeat_region 100739 100789 . ? . description=trf scaffold_166 . repeat_region 100739 100791 . ? . description=trf scaffold_166 . repeat_region 100852 100889 . ? . description=trf scaffold_166 ensembl protein_coding_gene 94231 94662 . + . ID=Physo124594;biotype=protein_coding;external_name=estExt_Genewise1.C_1660012;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 94231 94662 . + . ID=Physo124594;Parent=Physo124594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . exon 94231 94662 . + . ID=Physo124594.1;Parent=Physo124594;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_166 . CDS 94250 94582 . + 0 ID=Physo124594;Parent=Physo124594;rank=1 scaffold_166 ensembl protein_coding_gene 94947 95015 . + . ID=Physo124595;biotype=protein_coding;external_name=estExt_Genewise1.C_1660013;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 94947 95015 . + . ID=Physo124595;Parent=Physo124595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . exon 94947 95015 . + . ID=Physo124595.1;Parent=Physo124595;constitutive=1;ensembl_phase=-1;rank=1 scaffold_166 . CDS 94974 95015 . + 0 ID=Physo124595;Parent=Physo124595;rank=1 scaffold_166 ensembl protein_coding_gene 99666 99830 . - . ID=Physo124596;biotype=protein_coding;external_name=estExt_Genewise1.C_1660014;logic_name=jgi_physo1_1 scaffold_166 ensembl transcript 99666 99830 . - . ID=Physo124596;Parent=Physo124596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_166 . CDS 99666 99794 . - 0 ID=Physo124596;Parent=Physo124596;rank=1 scaffold_166 . exon 99666 99830 . - . ID=Physo124596.1;Parent=Physo124596;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_165 1 104463 scaffold_165 . biological_region 1835 1837 0.999 - . logic_name=eponine scaffold_165 . repeat_region 4020 5245 . ? . description=dust scaffold_165 . repeat_region 5711 5746 . ? . description=trf scaffold_165 . repeat_region 5876 5901 . ? . description=trf scaffold_165 . repeat_region 6020 6083 . ? . description=trf scaffold_165 . repeat_region 6049 6128 . ? . description=trf scaffold_165 . repeat_region 6066 6111 . ? . description=trf scaffold_165 . repeat_region 6122 6200 . ? . description=trf scaffold_165 . repeat_region 6269 6311 . ? . description=trf scaffold_165 . repeat_region 6489 6532 . ? . description=dust scaffold_165 . repeat_region 6489 6532 . ? . description=trf scaffold_165 . repeat_region 6489 6535 . + . description=(AAGTG)n scaffold_165 . repeat_region 6848 6895 . ? . description=trf scaffold_165 . repeat_region 7012 7036 . ? . description=trf scaffold_165 . repeat_region 7166 7201 . ? . description=trf scaffold_165 . repeat_region 7733 7762 . ? . description=dust scaffold_165 . repeat_region 7733 7762 . ? . description=trf scaffold_165 . repeat_region 7733 7762 . ? . description=trf scaffold_165 . repeat_region 7878 7931 . ? . description=dust scaffold_165 ensembl protein_coding_gene 5569 6494 . + . ID=Physo144075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650001;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 5569 6494 . + . ID=Physo144075;Parent=Physo144075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 5569 5994 . + 0 ID=Physo144075;Parent=Physo144075;rank=1 scaffold_165 . exon 5569 5994 . + . ID=Physo144075.1;Parent=Physo144075;constitutive=1;rank=1 scaffold_165 . CDS 6030 6494 . + 0 ID=Physo144075;Parent=Physo144075;rank=2 scaffold_165 . exon 6030 6494 . + . ID=Physo144075.2;Parent=Physo144075;constitutive=1;rank=2 scaffold_165 ensembl protein_coding_gene 6847 7343 . - . ID=Physo144076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650002;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 6847 7343 . - . ID=Physo144076;Parent=Physo144076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 6847 6885 . - 0 ID=Physo144076;Parent=Physo144076;rank=2 scaffold_165 . exon 6847 6885 . - . ID=Physo144076.2;Parent=Physo144076;constitutive=1;rank=2 scaffold_165 . CDS 6921 7343 . - 0 ID=Physo144076;Parent=Physo144076;rank=1 scaffold_165 . exon 6921 7343 . - . ID=Physo144076.1;Parent=Physo144076;constitutive=1;rank=1 scaffold_165 ensembl protein_coding_gene 11047 11973 . + . ID=Physo144077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650003;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 11047 11973 . + . ID=Physo144077;Parent=Physo144077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 11047 11074 . + 0 ID=Physo144077;Parent=Physo144077;rank=1 scaffold_165 . exon 11047 11074 . + . ID=Physo144077.1;Parent=Physo144077;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_165 . CDS 11149 11211 . + 0 ID=Physo144077;Parent=Physo144077;rank=2 scaffold_165 . exon 11149 11211 . + . ID=Physo144077.2;Parent=Physo144077;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_165 . CDS 11288 11973 . + 0 ID=Physo144077;Parent=Physo144077;rank=3 scaffold_165 . exon 11288 11973 . + . ID=Physo144077.3;Parent=Physo144077;constitutive=1;ensembl_phase=1;rank=3 scaffold_165 ensembl protein_coding_gene 15916 17248 . - . ID=Physo144078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650004;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 15916 17248 . - . ID=Physo144078;Parent=Physo144078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 15916 16953 . - 0 ID=Physo144078;Parent=Physo144078;rank=1 scaffold_165 . exon 15916 17049 . - . ID=Physo144078.2;Parent=Physo144078;constitutive=1;ensembl_phase=-1;rank=2 scaffold_165 . exon 17144 17248 . - . ID=Physo144078.1;Parent=Physo144078;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_165 ensembl protein_coding_gene 17762 19729 . + . ID=Physo144079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650005;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 17762 19729 . + . ID=Physo144079;Parent=Physo144079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 17762 19729 . + 0 ID=Physo144079;Parent=Physo144079;rank=1 scaffold_165 . exon 17762 19729 . + . ID=Physo144079.1;Parent=Physo144079;constitutive=1;rank=1 scaffold_165 . biological_region 20219 20223 0.999 - . logic_name=eponine scaffold_165 . biological_region 20224 20226 0.999 + . logic_name=eponine scaffold_165 . biological_region 20255 20260 0.999 - . logic_name=eponine scaffold_165 . biological_region 20276 20278 0.999 + . logic_name=eponine scaffold_165 . biological_region 20527 20532 0.999 - . logic_name=eponine scaffold_165 . biological_region 20712 20717 0.999 + . logic_name=eponine scaffold_165 . repeat_region 25006 25013 . ? . description=dust scaffold_165 . biological_region 26330 26333 0.999 - . logic_name=eponine scaffold_165 . biological_region 26710 26711 0.999 + . logic_name=eponine scaffold_165 . repeat_region 28129 28178 . ? . description=dust scaffold_165 ensembl protein_coding_gene 20063 21320 . + . ID=Physo144080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650006;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 20063 21320 . + . ID=Physo144080;Parent=Physo144080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . exon 20063 21320 . + . ID=Physo144080.1;Parent=Physo144080;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_165 . CDS 20065 21216 . + 0 ID=Physo144080;Parent=Physo144080;rank=1 scaffold_165 . repeat_region 28560 28592 . ? . description=trf scaffold_165 . repeat_region 29106 29448 . ? . description=trf scaffold_165 . repeat_region 29363 29503 . ? . description=trf scaffold_165 . repeat_region 33595 33648 . ? . description=trf scaffold_165 . repeat_region 34197 34218 . ? . description=trf scaffold_165 ensembl protein_coding_gene 33580 34643 . + . ID=Physo144081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650007;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 33580 34643 . + . ID=Physo144081;Parent=Physo144081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 33580 34540 . + 0 ID=Physo144081;Parent=Physo144081;rank=1 scaffold_165 . exon 33580 34540 . + . ID=Physo144081.1;Parent=Physo144081;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_165 . CDS 34612 34643 . + 0 ID=Physo144081;Parent=Physo144081;rank=2 scaffold_165 . exon 34612 34643 . + . ID=Physo144081.2;Parent=Physo144081;constitutive=1;ensembl_phase=1;rank=2 scaffold_165 . biological_region 43233 43236 0.999 + . logic_name=eponine scaffold_165 . biological_region 43567 43573 0.999 + . logic_name=eponine scaffold_165 . biological_region 43587 43589 0.999 + . logic_name=eponine scaffold_165 . biological_region 43835 43837 0.999 - . logic_name=eponine scaffold_165 . repeat_region 46330 46452 . - . description=Polinton-1_PI scaffold_165 . biological_region 46382 46383 0.999 - . logic_name=eponine scaffold_165 . biological_region 46860 46865 0.999 + . logic_name=eponine scaffold_165 . biological_region 46911 46913 0.999 - . logic_name=eponine scaffold_165 . biological_region 46958 46959 0.999 - . logic_name=eponine scaffold_165 . biological_region 47126 47130 0.999 - . logic_name=eponine scaffold_165 ensembl protein_coding_gene 38443 40037 . - . ID=Physo144082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650008;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 38443 40037 . - . ID=Physo144082;Parent=Physo144082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 38443 38483 . - 0 ID=Physo144082;Parent=Physo144082;rank=10 scaffold_165 . exon 38443 38483 . - . ID=Physo144082.10;Parent=Physo144082;constitutive=1;ensembl_phase=1;rank=10 scaffold_165 . CDS 38560 38605 . - 0 ID=Physo144082;Parent=Physo144082;rank=9 scaffold_165 . exon 38560 38605 . - . ID=Physo144082.9;Parent=Physo144082;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_165 . CDS 38678 38721 . - 0 ID=Physo144082;Parent=Physo144082;rank=8 scaffold_165 . exon 38678 38721 . - . ID=Physo144082.8;Parent=Physo144082;constitutive=1;ensembl_phase=1;rank=8 scaffold_165 . CDS 38798 38943 . - 0 ID=Physo144082;Parent=Physo144082;rank=7 scaffold_165 . exon 38798 38943 . - . ID=Physo144082.7;Parent=Physo144082;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_165 . CDS 39008 39063 . - 0 ID=Physo144082;Parent=Physo144082;rank=6 scaffold_165 . exon 39008 39063 . - . ID=Physo144082.6;Parent=Physo144082;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_165 . CDS 39128 39217 . - 0 ID=Physo144082;Parent=Physo144082;rank=5 scaffold_165 . exon 39128 39217 . - . ID=Physo144082.5;Parent=Physo144082;constitutive=1;rank=5 scaffold_165 . CDS 39326 39540 . - 0 ID=Physo144082;Parent=Physo144082;rank=4 scaffold_165 . exon 39326 39540 . - . ID=Physo144082.4;Parent=Physo144082;constitutive=1;ensembl_phase=1;rank=4 scaffold_165 . CDS 39613 39697 . - 0 ID=Physo144082;Parent=Physo144082;rank=3 scaffold_165 . exon 39613 39697 . - . ID=Physo144082.3;Parent=Physo144082;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_165 . CDS 39766 39890 . - 0 ID=Physo144082;Parent=Physo144082;rank=2 scaffold_165 . exon 39766 39890 . - . ID=Physo144082.2;Parent=Physo144082;constitutive=1;ensembl_phase=1;rank=2 scaffold_165 . CDS 39958 40027 . - 0 ID=Physo144082;Parent=Physo144082;rank=1 scaffold_165 . exon 39958 40037 . - . ID=Physo144082.1;Parent=Physo144082;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_165 ensembl protein_coding_gene 43573 45390 . + . ID=Physo144083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650009;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 43573 45390 . + . ID=Physo144083;Parent=Physo144083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 43573 45390 . + 0 ID=Physo144083;Parent=Physo144083;rank=1 scaffold_165 . exon 43573 45390 . + . ID=Physo144083.1;Parent=Physo144083;constitutive=1;rank=1 scaffold_165 ensembl protein_coding_gene 46629 47387 . - . ID=Physo144084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650010;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 46629 47387 . - . ID=Physo144084;Parent=Physo144084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 46629 47351 . - 0 ID=Physo144084;Parent=Physo144084;rank=1 scaffold_165 . exon 46629 47387 . - . ID=Physo144084.1;Parent=Physo144084;constitutive=1;ensembl_phase=-1;rank=1 scaffold_165 . repeat_region 53319 53483 . ? . description=trf scaffold_165 . repeat_region 53345 53418 . ? . description=trf scaffold_165 . repeat_region 53346 53479 . ? . description=trf scaffold_165 . repeat_region 53355 53479 . ? . description=dust scaffold_165 . repeat_region 53384 53467 . ? . description=trf scaffold_165 . repeat_region 53444 53492 . ? . description=trf scaffold_165 . repeat_region 54161 54607 . ? . description=trf scaffold_165 . repeat_region 54318 54337 . ? . description=trf scaffold_165 . repeat_region 54535 54582 . ? . description=trf scaffold_165 . repeat_region 55463 55490 . ? . description=trf scaffold_165 . repeat_region 56500 56507 . ? . description=dust scaffold_165 . repeat_region 56779 56792 . ? . description=dust scaffold_165 ensembl protein_coding_gene 49103 50250 . + . ID=Physo144085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650011;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 49103 50250 . + . ID=Physo144085;Parent=Physo144085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . exon 49103 50250 . + . ID=Physo144085.1;Parent=Physo144085;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_165 . CDS 49224 50147 . + 0 ID=Physo144085;Parent=Physo144085;rank=1 scaffold_165 ensembl protein_coding_gene 50414 52915 . + . ID=Physo144086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650012;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 50414 52915 . + . ID=Physo144086;Parent=Physo144086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 50414 50443 . + 0 ID=Physo144086;Parent=Physo144086;rank=1 scaffold_165 . exon 50414 50443 . + . ID=Physo144086.1;Parent=Physo144086;constitutive=1;rank=1 scaffold_165 . CDS 50558 52915 . + 0 ID=Physo144086;Parent=Physo144086;rank=2 scaffold_165 . exon 50558 52915 . + . ID=Physo144086.2;Parent=Physo144086;constitutive=1;rank=2 scaffold_165 ensembl protein_coding_gene 53231 54751 . - . ID=Physo144087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650013;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 53231 54751 . - . ID=Physo144087;Parent=Physo144087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 53231 54751 . - 0 ID=Physo144087;Parent=Physo144087;rank=1 scaffold_165 . exon 53231 54751 . - . ID=Physo144087.1;Parent=Physo144087;constitutive=1;rank=1 scaffold_165 ensembl protein_coding_gene 55257 56422 . + . ID=Physo144088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650014;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 55257 56422 . + . ID=Physo144088;Parent=Physo144088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 55257 56069 . + 0 ID=Physo144088;Parent=Physo144088;rank=1 scaffold_165 . exon 55257 56069 . + . ID=Physo144088.1;Parent=Physo144088;constitutive=1;rank=1 scaffold_165 . CDS 56138 56422 . + 0 ID=Physo144088;Parent=Physo144088;rank=2 scaffold_165 . exon 56138 56422 . + . ID=Physo144088.2;Parent=Physo144088;constitutive=1;rank=2 scaffold_165 . biological_region 58339 58343 0.999 + . logic_name=eponine scaffold_165 . biological_region 59176 59179 0.999 + . logic_name=eponine scaffold_165 . biological_region 59193 59199 0.999 + . logic_name=eponine scaffold_165 . biological_region 59210 59221 0.999 + . logic_name=eponine scaffold_165 . biological_region 59237 59238 0.999 - . logic_name=eponine scaffold_165 . biological_region 59340 59340 0.999 - . logic_name=eponine scaffold_165 . biological_region 60847 60851 0.999 - . logic_name=eponine scaffold_165 . biological_region 62185 62189 0.999 + . logic_name=eponine scaffold_165 ensembl protein_coding_gene 58749 59938 . + . ID=Physo144089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650015;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 58749 59938 . + . ID=Physo144089;Parent=Physo144089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 58749 59483 . + 0 ID=Physo144089;Parent=Physo144089;rank=1 scaffold_165 . exon 58749 59483 . + . ID=Physo144089.1;Parent=Physo144089;constitutive=1;rank=1 scaffold_165 . CDS 59568 59792 . + 0 ID=Physo144089;Parent=Physo144089;rank=2 scaffold_165 . exon 59568 59792 . + . ID=Physo144089.2;Parent=Physo144089;constitutive=1;rank=2 scaffold_165 . CDS 59873 59938 . + 0 ID=Physo144089;Parent=Physo144089;rank=3 scaffold_165 . exon 59873 59938 . + . ID=Physo144089.3;Parent=Physo144089;constitutive=1;rank=3 scaffold_165 ensembl protein_coding_gene 60209 62033 . - . ID=Physo144090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650016;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 60209 62033 . - . ID=Physo144090;Parent=Physo144090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . exon 60209 61248 . - . ID=Physo144090.4;Parent=Physo144090;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_165 . CDS 60415 61248 . - 0 ID=Physo144090;Parent=Physo144090;rank=4 scaffold_165 . CDS 61373 61489 . - 0 ID=Physo144090;Parent=Physo144090;rank=3 scaffold_165 . exon 61373 61489 . - . ID=Physo144090.3;Parent=Physo144090;constitutive=1;rank=3 scaffold_165 . CDS 61569 61705 . - 0 ID=Physo144090;Parent=Physo144090;rank=2 scaffold_165 . exon 61569 61705 . - . ID=Physo144090.2;Parent=Physo144090;constitutive=1;ensembl_phase=1;rank=2 scaffold_165 . CDS 61792 61987 . - 0 ID=Physo144090;Parent=Physo144090;rank=1 scaffold_165 . exon 61792 62033 . - . ID=Physo144090.1;Parent=Physo144090;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_165 ensembl protein_coding_gene 63688 67497 . - . ID=Physo158877;biotype=protein_coding;external_name=C_scaffold_165000002;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 63688 67497 . - . ID=Physo158877;Parent=Physo158877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 63688 63791 . - 0 ID=Physo158877;Parent=Physo158877;rank=12 scaffold_165 . exon 63688 63791 . - . ID=Physo158877.12;Parent=Physo158877;constitutive=1;ensembl_phase=1;rank=12 scaffold_165 . CDS 64144 64238 . - 0 ID=Physo158877;Parent=Physo158877;rank=11 scaffold_165 . exon 64144 64238 . - . ID=Physo158877.11;Parent=Physo158877;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_165 . CDS 64308 64504 . - 0 ID=Physo158877;Parent=Physo158877;rank=10 scaffold_165 . exon 64308 64504 . - . ID=Physo158877.10;Parent=Physo158877;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_165 . CDS 64666 64845 . - 0 ID=Physo158877;Parent=Physo158877;rank=9 scaffold_165 . exon 64666 64845 . - . ID=Physo158877.9;Parent=Physo158877;constitutive=1;rank=9 scaffold_165 . CDS 64939 65156 . - 0 ID=Physo158877;Parent=Physo158877;rank=8 scaffold_165 . exon 64939 65156 . - . ID=Physo158877.8;Parent=Physo158877;constitutive=1;ensembl_phase=1;rank=8 scaffold_165 . CDS 65312 65395 . - 0 ID=Physo158877;Parent=Physo158877;rank=7 scaffold_165 . exon 65312 65395 . - . ID=Physo158877.7;Parent=Physo158877;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_165 . CDS 65463 65553 . - 0 ID=Physo158877;Parent=Physo158877;rank=6 scaffold_165 . exon 65463 65553 . - . ID=Physo158877.6;Parent=Physo158877;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_165 . CDS 65608 66198 . - 0 ID=Physo158877;Parent=Physo158877;rank=5 scaffold_165 . exon 65608 66198 . - . ID=Physo158877.5;Parent=Physo158877;constitutive=1;rank=5 scaffold_165 . CDS 66279 66504 . - 0 ID=Physo158877;Parent=Physo158877;rank=4 scaffold_165 . exon 66279 66504 . - . ID=Physo158877.4;Parent=Physo158877;constitutive=1;ensembl_phase=2;rank=4 scaffold_165 . CDS 66576 66908 . - 0 ID=Physo158877;Parent=Physo158877;rank=3 scaffold_165 . CDS 67059 67256 . - 0 ID=Physo158877;Parent=Physo158877;rank=2 scaffold_165 . CDS 67394 67497 . - 0 ID=Physo158877;Parent=Physo158877;rank=1 scaffold_165 . repeat_region 67827 67899 . ? . description=trf scaffold_165 . repeat_region 67962 68035 . ? . description=trf scaffold_165 . repeat_region 69718 69739 . ? . description=trf scaffold_165 ensembl protein_coding_gene 75563 77491 . + . ID=Physo109608;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1650001;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 75563 77491 . + . ID=Physo109608;Parent=Physo109608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . exon 75563 77491 . + . ID=Physo109608.1;Parent=Physo109608;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_165 . CDS 75615 77357 . + 0 ID=Physo109608;Parent=Physo109608;rank=1 scaffold_165 ensembl protein_coding_gene 69564 72079 . - . ID=Physo144093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650019;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 69564 72079 . - . ID=Physo144093;Parent=Physo144093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . exon 69564 71112 . - . ID=Physo144093.3;Parent=Physo144093;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_165 . CDS 69741 71112 . - 0 ID=Physo144093;Parent=Physo144093;rank=3 scaffold_165 . CDS 71192 71791 . - 0 ID=Physo144093;Parent=Physo144093;rank=2 scaffold_165 . exon 71192 71791 . - . ID=Physo144093.2;Parent=Physo144093;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_165 . CDS 71856 72043 . - 0 ID=Physo144093;Parent=Physo144093;rank=1 scaffold_165 . exon 71856 72079 . - . ID=Physo144093.1;Parent=Physo144093;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_165 ensembl protein_coding_gene 72350 74767 . - . ID=Physo144094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650020;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 72350 74767 . - . ID=Physo144094;Parent=Physo144094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 72350 74767 . - 0 ID=Physo144094;Parent=Physo144094;rank=1 scaffold_165 . exon 72350 74767 . - . ID=Physo144094.1;Parent=Physo144094;constitutive=1;rank=1 scaffold_165 . exon 66576 66908 . - . ID=Physo158877.3;Parent=Physo158877;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_165 . exon 67059 67256 . - . ID=Physo158877.2;Parent=Physo158877;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_165 . exon 67394 67497 . - . ID=Physo158877.1;Parent=Physo158877;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_165 . biological_region 76031 76033 0.999 + . logic_name=eponine scaffold_165 . biological_region 76077 76077 0.999 - . logic_name=eponine scaffold_165 . biological_region 76138 76138 0.999 - . logic_name=eponine scaffold_165 . biological_region 77912 77917 0.999 + . logic_name=eponine scaffold_165 . biological_region 77979 77985 0.999 - . logic_name=eponine scaffold_165 . biological_region 78016 78019 0.999 + . logic_name=eponine scaffold_165 . biological_region 84696 84699 0.999 + . logic_name=eponine scaffold_165 . biological_region 84757 84758 0.999 - . logic_name=eponine scaffold_165 . biological_region 84757 84761 0.999 + . logic_name=eponine scaffold_165 . biological_region 84992 84998 0.999 + . logic_name=eponine scaffold_165 ensembl protein_coding_gene 83314 83931 . - . ID=Physo109609;biotype=protein_coding;description=Calcium-dependent protein 5 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U9];external_name=estExt_fgenesh1_pm.C_1650002;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 83314 83931 . - . ID=Physo109609;Parent=Physo109609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 83314 83571 . - 0 ID=Physo109609;Parent=Physo109609;rank=2 scaffold_165 . exon 83314 83571 . - . ID=Physo109609.2;Parent=Physo109609;constitutive=1;rank=2 scaffold_165 . CDS 83644 83931 . - 0 ID=Physo109609;Parent=Physo109609;rank=1 scaffold_165 . exon 83644 83931 . - . ID=Physo109609.1;Parent=Physo109609;constitutive=1;rank=1 scaffold_165 ensembl protein_coding_gene 77816 79367 . + . ID=Physo144096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650022;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 77816 79367 . + . ID=Physo144096;Parent=Physo144096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 77816 78952 . + 0 ID=Physo144096;Parent=Physo144096;rank=1 scaffold_165 . exon 77816 78952 . + . ID=Physo144096.1;Parent=Physo144096;constitutive=1;rank=1 scaffold_165 . CDS 79020 79367 . + 0 ID=Physo144096;Parent=Physo144096;rank=2 scaffold_165 . exon 79020 79367 . + . ID=Physo144096.2;Parent=Physo144096;constitutive=1;rank=2 scaffold_165 ensembl protein_coding_gene 84275 85231 . + . ID=Physo144098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650024;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 84275 85231 . + . ID=Physo144098;Parent=Physo144098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 84275 84557 . + 0 ID=Physo144098;Parent=Physo144098;rank=1 scaffold_165 . exon 84275 84557 . + . ID=Physo144098.1;Parent=Physo144098;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_165 . CDS 84646 84856 . + 0 ID=Physo144098;Parent=Physo144098;rank=2 scaffold_165 . exon 84646 84856 . + . ID=Physo144098.2;Parent=Physo144098;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_165 . CDS 84910 85231 . + 0 ID=Physo144098;Parent=Physo144098;rank=3 scaffold_165 . exon 84910 85231 . + . ID=Physo144098.3;Parent=Physo144098;constitutive=1;ensembl_phase=2;rank=3 scaffold_165 . repeat_region 86306 86313 . ? . description=dust scaffold_165 . repeat_region 87492 87578 . ? . description=trf scaffold_165 . repeat_region 87496 87593 . ? . description=trf scaffold_165 . repeat_region 87514 87630 . ? . description=trf scaffold_165 . repeat_region 87538 87630 . ? . description=trf scaffold_165 . repeat_region 87544 87629 . ? . description=trf scaffold_165 . repeat_region 87612 87803 . ? . description=trf scaffold_165 ensembl protein_coding_gene 93568 94844 . - . ID=Physo109610;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1650003;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 93568 94844 . - . ID=Physo109610;Parent=Physo109610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . exon 93568 94245 . - . ID=Physo109610.4;Parent=Physo109610;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_165 . CDS 93719 94245 . - 0 ID=Physo109610;Parent=Physo109610;rank=4 scaffold_165 . CDS 94341 94523 . - 0 ID=Physo109610;Parent=Physo109610;rank=3 scaffold_165 . exon 94341 94523 . - . ID=Physo109610.3;Parent=Physo109610;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_165 . CDS 94613 94656 . - 0 ID=Physo109610;Parent=Physo109610;rank=2 scaffold_165 . exon 94613 94656 . - . ID=Physo109610.2;Parent=Physo109610;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_165 . CDS 94735 94844 . - 0 ID=Physo109610;Parent=Physo109610;rank=1 scaffold_165 . exon 94735 94844 . - . ID=Physo109610.1;Parent=Physo109610;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_165 ensembl protein_coding_gene 87399 88220 . - . ID=Physo144099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650025;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 87399 88220 . - . ID=Physo144099;Parent=Physo144099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 87399 88220 . - 0 ID=Physo144099;Parent=Physo144099;rank=1 scaffold_165 . exon 87399 88220 . - . ID=Physo144099.1;Parent=Physo144099;constitutive=1;rank=1 scaffold_165 ensembl protein_coding_gene 90298 92085 . + . ID=Physo144100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650026;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 90298 92085 . + . ID=Physo144100;Parent=Physo144100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 90298 90359 . + 0 ID=Physo144100;Parent=Physo144100;rank=1 scaffold_165 . exon 90298 90359 . + . ID=Physo144100.1;Parent=Physo144100;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_165 . CDS 90472 90619 . + 0 ID=Physo144100;Parent=Physo144100;rank=2 scaffold_165 . exon 90472 90619 . + . ID=Physo144100.2;Parent=Physo144100;constitutive=1;ensembl_phase=2;rank=2 scaffold_165 . CDS 90698 90807 . + 0 ID=Physo144100;Parent=Physo144100;rank=3 scaffold_165 . exon 90698 90807 . + . ID=Physo144100.3;Parent=Physo144100;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_165 . CDS 90903 91182 . + 0 ID=Physo144100;Parent=Physo144100;rank=4 scaffold_165 . exon 90903 91182 . + . ID=Physo144100.4;Parent=Physo144100;constitutive=1;ensembl_phase=2;rank=4 scaffold_165 . CDS 91250 91729 . + 0 ID=Physo144100;Parent=Physo144100;rank=5 scaffold_165 . exon 91250 91729 . + . ID=Physo144100.5;Parent=Physo144100;constitutive=1;rank=5 scaffold_165 . CDS 91806 91964 . + 0 ID=Physo144100;Parent=Physo144100;rank=6 scaffold_165 . exon 91806 91964 . + . ID=Physo144100.6;Parent=Physo144100;constitutive=1;rank=6 scaffold_165 . CDS 92029 92085 . + 0 ID=Physo144100;Parent=Physo144100;rank=7 scaffold_165 . exon 92029 92085 . + . ID=Physo144100.7;Parent=Physo144100;constitutive=1;rank=7 scaffold_165 ensembl protein_coding_gene 92344 93455 . - . ID=Physo144101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650027;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 92344 93455 . - . ID=Physo144101;Parent=Physo144101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . exon 92344 92487 . - . ID=Physo144101.6;Parent=Physo144101;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_165 . CDS 92381 92487 . - 0 ID=Physo144101;Parent=Physo144101;rank=6 scaffold_165 . CDS 92568 92715 . - 0 ID=Physo144101;Parent=Physo144101;rank=5 scaffold_165 . exon 92568 92715 . - . ID=Physo144101.5;Parent=Physo144101;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_165 . CDS 92803 92844 . - 0 ID=Physo144101;Parent=Physo144101;rank=4 scaffold_165 . exon 92803 92844 . - . ID=Physo144101.4;Parent=Physo144101;constitutive=1;rank=4 scaffold_165 . CDS 92928 92990 . - 0 ID=Physo144101;Parent=Physo144101;rank=3 scaffold_165 . exon 92928 92990 . - . ID=Physo144101.3;Parent=Physo144101;constitutive=1;rank=3 scaffold_165 . CDS 93068 93147 . - 0 ID=Physo144101;Parent=Physo144101;rank=2 scaffold_165 . exon 93068 93147 . - . ID=Physo144101.2;Parent=Physo144101;constitutive=1;ensembl_phase=1;rank=2 scaffold_165 . CDS 93220 93400 . - 0 ID=Physo144101;Parent=Physo144101;rank=1 scaffold_165 . exon 93220 93455 . - . ID=Physo144101.1;Parent=Physo144101;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_165 . biological_region 98936 98939 0.999 + . logic_name=eponine scaffold_165 ensembl protein_coding_gene 103035 103722 . - . ID=Physo144103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1650029;logic_name=jgi_physo1_1 scaffold_165 ensembl transcript 103035 103722 . - . ID=Physo144103;Parent=Physo144103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_165 . CDS 103035 103415 . - 0 ID=Physo144103;Parent=Physo144103;rank=2 scaffold_165 . exon 103035 103415 . - . ID=Physo144103.2;Parent=Physo144103;constitutive=1;rank=2 scaffold_165 . CDS 103504 103722 . - 0 ID=Physo144103;Parent=Physo144103;rank=1 scaffold_165 . exon 103504 103722 . - . ID=Physo144103.1;Parent=Physo144103;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_164 1 105903 scaffold_164 . repeat_region 1 937 . ? . description=trf scaffold_164 . repeat_region 188 225 . ? . description=trf scaffold_164 . biological_region 274 278 0.999 + . logic_name=eponine scaffold_164 . repeat_region 544 581 . ? . description=trf scaffold_164 . repeat_region 900 938 . ? . description=trf scaffold_164 . repeat_region 2192 2223 . ? . description=trf scaffold_164 . repeat_region 3324 3363 . ? . description=trf scaffold_164 . repeat_region 3329 3424 . ? . description=dust scaffold_164 . repeat_region 3336 3363 . ? . description=trf scaffold_164 . repeat_region 3336 3380 . ? . description=trf scaffold_164 . repeat_region 3339 3369 . ? . description=trf scaffold_164 . repeat_region 3349 3411 . ? . description=trf scaffold_164 . repeat_region 3787 3795 . ? . description=dust scaffold_164 . biological_region 5955 5959 0.999 - . logic_name=eponine scaffold_164 . repeat_region 7652 7688 . ? . description=trf scaffold_164 ensembl protein_coding_gene 23 947 . + . ID=Physo144046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640001;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 23 947 . + . ID=Physo144046;Parent=Physo144046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 23 202 . + 0 ID=Physo144046;Parent=Physo144046;rank=1 scaffold_164 . exon 23 202 . + . ID=Physo144046.1;Parent=Physo144046;constitutive=1;rank=1 scaffold_164 . CDS 316 558 . + 0 ID=Physo144046;Parent=Physo144046;rank=2 scaffold_164 . exon 316 558 . + . ID=Physo144046.2;Parent=Physo144046;constitutive=1;rank=2 scaffold_164 . CDS 672 947 . + 0 ID=Physo144046;Parent=Physo144046;rank=3 scaffold_164 . exon 672 947 . + . ID=Physo144046.3;Parent=Physo144046;constitutive=1;rank=3 scaffold_164 ensembl protein_coding_gene 2111 2762 . + . ID=Physo144047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640002;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 2111 2762 . + . ID=Physo144047;Parent=Physo144047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 2111 2335 . + 0 ID=Physo144047;Parent=Physo144047;rank=1 scaffold_164 . exon 2111 2335 . + . ID=Physo144047.1;Parent=Physo144047;constitutive=1;rank=1 scaffold_164 . CDS 2460 2762 . + 0 ID=Physo144047;Parent=Physo144047;rank=2 scaffold_164 . exon 2460 2762 . + . ID=Physo144047.2;Parent=Physo144047;constitutive=1;rank=2 scaffold_164 ensembl protein_coding_gene 8266 13520 . - . ID=Physo144048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640003;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 8266 13520 . - . ID=Physo144048;Parent=Physo144048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 8266 9282 . - 0 ID=Physo144048;Parent=Physo144048;rank=8 scaffold_164 . exon 8266 9282 . - . ID=Physo144048.8;Parent=Physo144048;constitutive=1;rank=8 scaffold_164 . CDS 9385 10037 . - 0 ID=Physo144048;Parent=Physo144048;rank=7 scaffold_164 . exon 9385 10037 . - . ID=Physo144048.7;Parent=Physo144048;constitutive=1;ensembl_phase=1;rank=7 scaffold_164 . CDS 10293 11046 . - 0 ID=Physo144048;Parent=Physo144048;rank=6 scaffold_164 . CDS 11476 11561 . - 0 ID=Physo144048;Parent=Physo144048;rank=5 scaffold_164 . CDS 11939 12415 . - 0 ID=Physo144048;Parent=Physo144048;rank=4 scaffold_164 . CDS 12546 12699 . - 0 ID=Physo144048;Parent=Physo144048;rank=3 scaffold_164 . CDS 13057 13130 . - 0 ID=Physo144048;Parent=Physo144048;rank=2 scaffold_164 . CDS 13175 13520 . - 0 ID=Physo144048;Parent=Physo144048;rank=1 scaffold_164 . exon 10293 11046 . - . ID=Physo144048.6;Parent=Physo144048;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_164 . exon 11476 11561 . - . ID=Physo144048.5;Parent=Physo144048;constitutive=1;ensembl_phase=1;rank=5 scaffold_164 . exon 11939 12415 . - . ID=Physo144048.4;Parent=Physo144048;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_164 . exon 12546 12699 . - . ID=Physo144048.3;Parent=Physo144048;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_164 . exon 13057 13130 . - . ID=Physo144048.2;Parent=Physo144048;constitutive=1;ensembl_phase=1;rank=2 scaffold_164 . exon 13175 13520 . - . ID=Physo144048.1;Parent=Physo144048;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_164 ensembl protein_coding_gene 15881 18298 . + . ID=Physo144049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640004;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 15881 18298 . + . ID=Physo144049;Parent=Physo144049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 15881 18298 . + 0 ID=Physo144049;Parent=Physo144049;rank=1 scaffold_164 . exon 15881 18298 . + . ID=Physo144049.1;Parent=Physo144049;constitutive=1;rank=1 scaffold_164 ensembl protein_coding_gene 18415 19381 . - . ID=Physo144050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640005;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 18415 19381 . - . ID=Physo144050;Parent=Physo144050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 18415 18533 . - 0 ID=Physo144050;Parent=Physo144050;rank=5 scaffold_164 . exon 18415 18533 . - . ID=Physo144050.5;Parent=Physo144050;constitutive=1;ensembl_phase=1;rank=5 scaffold_164 . CDS 18594 18624 . - 0 ID=Physo144050;Parent=Physo144050;rank=4 scaffold_164 . exon 18594 18624 . - . ID=Physo144050.4;Parent=Physo144050;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_164 . CDS 18751 18927 . - 0 ID=Physo144050;Parent=Physo144050;rank=3 scaffold_164 . exon 18751 18927 . - . ID=Physo144050.3;Parent=Physo144050;constitutive=1;rank=3 scaffold_164 . CDS 19060 19159 . - 0 ID=Physo144050;Parent=Physo144050;rank=2 scaffold_164 . exon 19060 19159 . - . ID=Physo144050.2;Parent=Physo144050;constitutive=1;ensembl_phase=2;rank=2 scaffold_164 . CDS 19230 19381 . - 0 ID=Physo144050;Parent=Physo144050;rank=1 scaffold_164 . exon 19230 19381 . - . ID=Physo144050.1;Parent=Physo144050;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_164 . biological_region 20427 20427 0.999 + . logic_name=eponine scaffold_164 . biological_region 20450 20451 0.999 - . logic_name=eponine scaffold_164 . biological_region 21019 21022 0.999 + . logic_name=eponine scaffold_164 . biological_region 21990 21992 0.999 + . logic_name=eponine scaffold_164 . biological_region 22035 22037 0.999 - . logic_name=eponine scaffold_164 . biological_region 22060 22064 0.999 - . logic_name=eponine scaffold_164 . repeat_region 22256 22318 . ? . description=dust scaffold_164 . repeat_region 22273 22298 . ? . description=trf scaffold_164 . biological_region 22376 22376 0.999 + . logic_name=eponine scaffold_164 . repeat_region 23869 23917 . ? . description=trf scaffold_164 . repeat_region 23884 23917 . ? . description=dust scaffold_164 . biological_region 24463 24468 0.999 + . logic_name=eponine scaffold_164 . biological_region 24500 24507 0.999 + . logic_name=eponine scaffold_164 . biological_region 27231 27233 0.999 - . logic_name=eponine scaffold_164 ensembl protein_coding_gene 28684 29298 . + . ID=Physo124531;biotype=protein_coding;external_name=estExt_Genewise1.C_1640004;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 28684 29298 . + . ID=Physo124531;Parent=Physo124531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 28684 28904 . + 0 ID=Physo124531;Parent=Physo124531;rank=1 scaffold_164 . exon 28684 28904 . + . ID=Physo124531.1;Parent=Physo124531;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_164 . CDS 28966 29043 . + 0 ID=Physo124531;Parent=Physo124531;rank=2 scaffold_164 . CDS 29115 29232 . + 0 ID=Physo124531;Parent=Physo124531;rank=3 scaffold_164 ensembl protein_coding_gene 19762 20721 . - . ID=Physo144051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640006;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 19762 20721 . - . ID=Physo144051;Parent=Physo144051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . exon 19762 19900 . - . ID=Physo144051.3;Parent=Physo144051;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_164 . CDS 19797 19900 . - 0 ID=Physo144051;Parent=Physo144051;rank=3 scaffold_164 . CDS 19992 20088 . - 0 ID=Physo144051;Parent=Physo144051;rank=2 scaffold_164 . exon 19992 20088 . - . ID=Physo144051.2;Parent=Physo144051;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_164 . CDS 20183 20665 . - 0 ID=Physo144051;Parent=Physo144051;rank=1 scaffold_164 . exon 20183 20721 . - . ID=Physo144051.1;Parent=Physo144051;constitutive=1;ensembl_phase=-1;rank=1 scaffold_164 ensembl protein_coding_gene 20945 22616 . - . ID=Physo144052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640007;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 20945 22616 . - . ID=Physo144052;Parent=Physo144052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 20945 22119 . - 0 ID=Physo144052;Parent=Physo144052;rank=2 scaffold_164 . exon 20945 22119 . - . ID=Physo144052.2;Parent=Physo144052;constitutive=1;ensembl_phase=1;rank=2 scaffold_164 . CDS 22205 22616 . - 0 ID=Physo144052;Parent=Physo144052;rank=1 scaffold_164 . exon 22205 22616 . - . ID=Physo144052.1;Parent=Physo144052;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_164 ensembl protein_coding_gene 24371 27619 . + . ID=Physo144053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640008;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 24371 27619 . + . ID=Physo144053;Parent=Physo144053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 24371 27619 . + 0 ID=Physo144053;Parent=Physo144053;rank=1 scaffold_164 . exon 24371 27619 . + . ID=Physo144053.1;Parent=Physo144053;constitutive=1;rank=1 scaffold_164 ensembl protein_coding_gene 27834 28412 . + . ID=Physo144054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640009;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 27834 28412 . + . ID=Physo144054;Parent=Physo144054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 27834 28412 . + 0 ID=Physo144054;Parent=Physo144054;rank=1 scaffold_164 . exon 27834 28412 . + . ID=Physo144054.1;Parent=Physo144054;constitutive=1;rank=1 scaffold_164 . exon 28966 29043 . + . ID=Physo124531.2;Parent=Physo124531;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_164 . exon 29115 29298 . + . ID=Physo124531.3;Parent=Physo124531;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_164 ensembl protein_coding_gene 29394 30625 . + . ID=Physo144056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640011;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 29394 30625 . + . ID=Physo144056;Parent=Physo144056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 29394 30581 . + 0 ID=Physo144056;Parent=Physo144056;rank=1 scaffold_164 . exon 29394 30625 . + . ID=Physo144056.1;Parent=Physo144056;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_164 ensembl protein_coding_gene 32070 33251 . + . ID=Physo144057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640012;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 32070 33251 . + . ID=Physo144057;Parent=Physo144057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 32070 33251 . + 0 ID=Physo144057;Parent=Physo144057;rank=1 scaffold_164 . exon 32070 33251 . + . ID=Physo144057.1;Parent=Physo144057;constitutive=1;rank=1 scaffold_164 ensembl protein_coding_gene 34404 37381 . + . ID=Physo144058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640013;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 34404 37381 . + . ID=Physo144058;Parent=Physo144058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 34404 34688 . + 0 ID=Physo144058;Parent=Physo144058;rank=1 scaffold_164 . exon 34404 34688 . + . ID=Physo144058.1;Parent=Physo144058;constitutive=1;rank=1 scaffold_164 . CDS 34768 35074 . + 0 ID=Physo144058;Parent=Physo144058;rank=2 scaffold_164 . exon 34768 35074 . + . ID=Physo144058.2;Parent=Physo144058;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_164 . CDS 35145 36016 . + 0 ID=Physo144058;Parent=Physo144058;rank=3 scaffold_164 . exon 35145 36016 . + . ID=Physo144058.3;Parent=Physo144058;constitutive=1;ensembl_phase=1;rank=3 scaffold_164 . CDS 36082 36147 . + 0 ID=Physo144058;Parent=Physo144058;rank=4 scaffold_164 . exon 36082 36147 . + . ID=Physo144058.4;Parent=Physo144058;constitutive=1;rank=4 scaffold_164 . CDS 36218 36427 . + 0 ID=Physo144058;Parent=Physo144058;rank=5 scaffold_164 . exon 36218 36427 . + . ID=Physo144058.5;Parent=Physo144058;constitutive=1;rank=5 scaffold_164 . CDS 36506 36884 . + 0 ID=Physo144058;Parent=Physo144058;rank=6 scaffold_164 . exon 36506 36884 . + . ID=Physo144058.6;Parent=Physo144058;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_164 . CDS 36960 37381 . + 0 ID=Physo144058;Parent=Physo144058;rank=7 scaffold_164 . exon 36960 37381 . + . ID=Physo144058.7;Parent=Physo144058;constitutive=1;ensembl_phase=1;rank=7 scaffold_164 ensembl protein_coding_gene 37505 38410 . - . ID=Physo144059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640014;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 37505 38410 . - . ID=Physo144059;Parent=Physo144059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 37505 38410 . - 0 ID=Physo144059;Parent=Physo144059;rank=1 scaffold_164 . exon 37505 38410 . - . ID=Physo144059.1;Parent=Physo144059;constitutive=1;rank=1 scaffold_164 . biological_region 38588 38592 0.999 + . logic_name=eponine scaffold_164 . biological_region 38621 38624 0.999 + . logic_name=eponine scaffold_164 . biological_region 38707 38709 0.999 - . logic_name=eponine scaffold_164 . biological_region 38719 38724 0.999 - . logic_name=eponine scaffold_164 . biological_region 38754 38754 0.999 - . logic_name=eponine scaffold_164 . biological_region 39413 39413 0.999 + . logic_name=eponine scaffold_164 . repeat_region 43707 43714 . ? . description=dust scaffold_164 . biological_region 44829 44831 0.999 - . logic_name=eponine scaffold_164 . biological_region 44975 44980 0.999 + . logic_name=eponine scaffold_164 . biological_region 45023 45028 0.999 - . logic_name=eponine scaffold_164 . biological_region 45049 45053 0.999 + . logic_name=eponine scaffold_164 . biological_region 45116 45119 0.999 - . logic_name=eponine scaffold_164 . biological_region 46432 46433 0.999 + . logic_name=eponine scaffold_164 . biological_region 46445 46449 0.999 - . logic_name=eponine scaffold_164 . biological_region 46727 46729 0.999 - . logic_name=eponine scaffold_164 . biological_region 46859 46860 0.999 - . logic_name=eponine scaffold_164 . biological_region 47001 47005 0.999 + . logic_name=eponine scaffold_164 . biological_region 47053 47054 0.999 - . logic_name=eponine scaffold_164 . biological_region 47089 47093 0.999 - . logic_name=eponine scaffold_164 . biological_region 47108 47108 0.999 + . logic_name=eponine scaffold_164 . biological_region 47173 47178 0.999 + . logic_name=eponine scaffold_164 ensembl protein_coding_gene 43695 45235 . - . ID=Physo109605;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1640002;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 43695 45235 . - . ID=Physo109605;Parent=Physo109605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . exon 43695 45235 . - . ID=Physo109605.1;Parent=Physo109605;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_164 . CDS 43819 45207 . - 0 ID=Physo109605;Parent=Physo109605;rank=1 scaffold_164 ensembl protein_coding_gene 45341 47419 . - . ID=Physo109606;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1640003;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 45341 47419 . - . ID=Physo109606;Parent=Physo109606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . exon 45341 45570 . - . ID=Physo109606.4;Parent=Physo109606;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_164 . CDS 45433 45570 . - 0 ID=Physo109606;Parent=Physo109606;rank=4 scaffold_164 . CDS 45680 45797 . - 0 ID=Physo109606;Parent=Physo109606;rank=3 scaffold_164 . exon 45680 45797 . - . ID=Physo109606.3;Parent=Physo109606;constitutive=1;ensembl_phase=2;rank=3 scaffold_164 . CDS 45867 47113 . - 0 ID=Physo109606;Parent=Physo109606;rank=2 scaffold_164 . exon 45867 47113 . - . ID=Physo109606.2;Parent=Physo109606;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_164 . CDS 47390 47419 . - 0 ID=Physo109606;Parent=Physo109606;rank=1 scaffold_164 . exon 47390 47419 . - . ID=Physo109606.1;Parent=Physo109606;constitutive=1;rank=1 scaffold_164 ensembl protein_coding_gene 38614 40252 . + . ID=Physo144060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640015;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 38614 40252 . + . ID=Physo144060;Parent=Physo144060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . exon 38614 39269 . + . ID=Physo144060.1;Parent=Physo144060;constitutive=1;ensembl_phase=-1;rank=1 scaffold_164 . CDS 38622 39269 . + 0 ID=Physo144060;Parent=Physo144060;rank=1 scaffold_164 . CDS 39350 39575 . + 0 ID=Physo144060;Parent=Physo144060;rank=2 scaffold_164 . exon 39350 39575 . + . ID=Physo144060.2;Parent=Physo144060;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_164 . CDS 39651 39730 . + 0 ID=Physo144060;Parent=Physo144060;rank=3 scaffold_164 . exon 39651 39730 . + . ID=Physo144060.3;Parent=Physo144060;constitutive=1;ensembl_phase=1;rank=3 scaffold_164 . CDS 39816 40160 . + 0 ID=Physo144060;Parent=Physo144060;rank=4 scaffold_164 . exon 39816 40252 . + . ID=Physo144060.4;Parent=Physo144060;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_164 ensembl protein_coding_gene 48015 50153 . + . ID=Physo144063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640018;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 48015 50153 . + . ID=Physo144063;Parent=Physo144063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 48015 48117 . + 0 ID=Physo144063;Parent=Physo144063;rank=1 scaffold_164 . exon 48015 48117 . + . ID=Physo144063.1;Parent=Physo144063;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_164 . CDS 48205 50153 . + 0 ID=Physo144063;Parent=Physo144063;rank=2 scaffold_164 . repeat_region 48309 48454 . ? . description=trf scaffold_164 . repeat_region 48363 48522 . ? . description=trf scaffold_164 . repeat_region 49858 49937 . + . description=Sola3-2_PS scaffold_164 . repeat_region 53007 53134 . ? . description=trf scaffold_164 . repeat_region 55026 55813 . - . description=Sola3-1_PS scaffold_164 . repeat_region 56975 56997 . ? . description=trf scaffold_164 . exon 48205 50153 . + . ID=Physo144063.2;Parent=Physo144063;constitutive=1;ensembl_phase=1;rank=2 scaffold_164 ensembl protein_coding_gene 51282 53476 . - . ID=Physo144064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640019;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 51282 53476 . - . ID=Physo144064;Parent=Physo144064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 51282 53299 . - 0 ID=Physo144064;Parent=Physo144064;rank=2 scaffold_164 . exon 51282 53299 . - . ID=Physo144064.2;Parent=Physo144064;constitutive=1;ensembl_phase=1;rank=2 scaffold_164 . CDS 53377 53476 . - 0 ID=Physo144064;Parent=Physo144064;rank=1 scaffold_164 . exon 53377 53476 . - . ID=Physo144064.1;Parent=Physo144064;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_164 ensembl protein_coding_gene 53915 54301 . - . ID=Physo144065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640020;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 53915 54301 . - . ID=Physo144065;Parent=Physo144065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 53915 54301 . - 0 ID=Physo144065;Parent=Physo144065;rank=1 scaffold_164 . exon 53915 54301 . - . ID=Physo144065.1;Parent=Physo144065;constitutive=1;rank=1 scaffold_164 ensembl protein_coding_gene 57421 59112 . - . ID=Physo144066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640021;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 57421 59112 . - . ID=Physo144066;Parent=Physo144066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 57421 59112 . - 0 ID=Physo144066;Parent=Physo144066;rank=1 scaffold_164 . exon 57421 59112 . - . ID=Physo144066.1;Parent=Physo144066;constitutive=1;rank=1 scaffold_164 . biological_region 58842 58844 0.999 - . logic_name=eponine scaffold_164 . repeat_region 59725 59737 . ? . description=dust scaffold_164 . repeat_region 61416 61495 . ? . description=dust scaffold_164 . repeat_region 75668 76463 . - . description=Sola3-1_PS scaffold_164 ensembl protein_coding_gene 70232 72107 . + . ID=Physo144067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640022;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 70232 72107 . + . ID=Physo144067;Parent=Physo144067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 70232 70308 . + 0 ID=Physo144067;Parent=Physo144067;rank=1 scaffold_164 . exon 70232 70308 . + . ID=Physo144067.1;Parent=Physo144067;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_164 . CDS 70987 71170 . + 0 ID=Physo144067;Parent=Physo144067;rank=2 scaffold_164 . exon 70987 71170 . + . ID=Physo144067.2;Parent=Physo144067;constitutive=1;ensembl_phase=2;rank=2 scaffold_164 . CDS 71191 71545 . + 0 ID=Physo144067;Parent=Physo144067;rank=3 scaffold_164 . exon 71191 71545 . + . ID=Physo144067.3;Parent=Physo144067;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_164 . CDS 71574 71814 . + 0 ID=Physo144067;Parent=Physo144067;rank=4 scaffold_164 . exon 71574 71814 . + . ID=Physo144067.4;Parent=Physo144067;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_164 . CDS 72104 72107 . + 0 ID=Physo144067;Parent=Physo144067;rank=5 scaffold_164 . exon 72104 72107 . + . ID=Physo144067.5;Parent=Physo144067;constitutive=1;ensembl_phase=2;rank=5 scaffold_164 . repeat_region 79302 79353 . ? . description=trf scaffold_164 . biological_region 79638 79641 0.999 - . logic_name=eponine scaffold_164 . repeat_region 79690 79697 . ? . description=dust scaffold_164 . biological_region 81734 81737 0.999 + . logic_name=eponine scaffold_164 . biological_region 81848 81851 0.999 - . logic_name=eponine scaffold_164 ensembl protein_coding_gene 79258 82147 . + . ID=Physo144068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640023;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 79258 82147 . + . ID=Physo144068;Parent=Physo144068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 79258 79667 . + 0 ID=Physo144068;Parent=Physo144068;rank=1 scaffold_164 . exon 79258 79667 . + . ID=Physo144068.1;Parent=Physo144068;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_164 . CDS 79743 79844 . + 0 ID=Physo144068;Parent=Physo144068;rank=2 scaffold_164 . exon 79743 79844 . + . ID=Physo144068.2;Parent=Physo144068;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_164 . CDS 79909 79974 . + 0 ID=Physo144068;Parent=Physo144068;rank=3 scaffold_164 . exon 79909 79974 . + . ID=Physo144068.3;Parent=Physo144068;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_164 . CDS 80052 80126 . + 0 ID=Physo144068;Parent=Physo144068;rank=4 scaffold_164 . exon 80052 80126 . + . ID=Physo144068.4;Parent=Physo144068;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_164 . CDS 80205 80285 . + 0 ID=Physo144068;Parent=Physo144068;rank=5 scaffold_164 . exon 80205 80285 . + . ID=Physo144068.5;Parent=Physo144068;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_164 . CDS 80355 80414 . + 0 ID=Physo144068;Parent=Physo144068;rank=6 scaffold_164 . exon 80355 80414 . + . ID=Physo144068.6;Parent=Physo144068;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_164 . CDS 80491 80559 . + 0 ID=Physo144068;Parent=Physo144068;rank=7 scaffold_164 . exon 80491 80559 . + . ID=Physo144068.7;Parent=Physo144068;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_164 . CDS 80699 80832 . + 0 ID=Physo144068;Parent=Physo144068;rank=8 scaffold_164 . exon 80699 80832 . + . ID=Physo144068.8;Parent=Physo144068;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_164 . CDS 80898 82147 . + 0 ID=Physo144068;Parent=Physo144068;rank=9 scaffold_164 . exon 80898 82147 . + . ID=Physo144068.9;Parent=Physo144068;constitutive=1;ensembl_phase=1;rank=9 scaffold_164 ensembl protein_coding_gene 85429 87672 . - . ID=Physo144069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640024;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 85429 87672 . - . ID=Physo144069;Parent=Physo144069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . exon 85429 87672 . - . ID=Physo144069.1;Parent=Physo144069;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_164 . CDS 85546 87672 . - 0 ID=Physo144069;Parent=Physo144069;rank=1 scaffold_164 ensembl protein_coding_gene 89445 90215 . - . ID=Physo144070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640025;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 89445 90215 . - . ID=Physo144070;Parent=Physo144070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 89445 90215 . - 0 ID=Physo144070;Parent=Physo144070;rank=1 scaffold_164 . exon 89445 90215 . - . ID=Physo144070.1;Parent=Physo144070;constitutive=1;rank=1 scaffold_164 . biological_region 98285 98290 0.999 - . logic_name=eponine scaffold_164 . repeat_region 98523 98565 . ? . description=trf scaffold_164 . biological_region 98913 98915 0.999 + . logic_name=eponine scaffold_164 . biological_region 102036 102037 0.999 + . logic_name=eponine scaffold_164 . biological_region 102329 102330 0.999 + . logic_name=eponine scaffold_164 . biological_region 102396 102400 0.999 + . logic_name=eponine scaffold_164 . repeat_region 102964 105345 . + . description=GypsyPi-1c_I-int scaffold_164 . biological_region 103184 103185 0.999 + . logic_name=eponine scaffold_164 . repeat_region 103353 103405 . ? . description=trf scaffold_164 . biological_region 104293 104297 0.999 + . logic_name=eponine scaffold_164 . biological_region 104750 104753 0.999 + . logic_name=eponine scaffold_164 . repeat_region 105612 105890 . + . description=GypsyPi-1c_I-int scaffold_164 ensembl protein_coding_gene 103584 104270 . + . ID=Physo109607;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1640004;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 103584 104270 . + . ID=Physo109607;Parent=Physo109607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 103584 104270 . + 0 ID=Physo109607;Parent=Physo109607;rank=1 scaffold_164 . exon 103584 104270 . + . ID=Physo109607.1;Parent=Physo109607;constitutive=1;rank=1 scaffold_164 ensembl protein_coding_gene 97792 99388 . - . ID=Physo144071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640026;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 97792 99388 . - . ID=Physo144071;Parent=Physo144071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 97792 97882 . - 0 ID=Physo144071;Parent=Physo144071;rank=3 scaffold_164 . exon 97792 97882 . - . ID=Physo144071.3;Parent=Physo144071;constitutive=1;ensembl_phase=2;rank=3 scaffold_164 . CDS 97914 99128 . - 0 ID=Physo144071;Parent=Physo144071;rank=2 scaffold_164 . exon 97914 99128 . - . ID=Physo144071.2;Parent=Physo144071;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_164 . CDS 99195 99388 . - 0 ID=Physo144071;Parent=Physo144071;rank=1 scaffold_164 . exon 99195 99388 . - . ID=Physo144071.1;Parent=Physo144071;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_164 ensembl protein_coding_gene 101658 103410 . + . ID=Physo144072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640027;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 101658 103410 . + . ID=Physo144072;Parent=Physo144072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . CDS 101658 102201 . + 0 ID=Physo144072;Parent=Physo144072;rank=1 scaffold_164 . exon 101658 102201 . + . ID=Physo144072.1;Parent=Physo144072;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_164 . CDS 102411 103224 . + 0 ID=Physo144072;Parent=Physo144072;rank=2 scaffold_164 . exon 102411 103224 . + . ID=Physo144072.2;Parent=Physo144072;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_164 . CDS 103320 103410 . + 0 ID=Physo144072;Parent=Physo144072;rank=3 scaffold_164 . exon 103320 103410 . + . ID=Physo144072.3;Parent=Physo144072;constitutive=1;ensembl_phase=2;rank=3 scaffold_164 ensembl protein_coding_gene 104421 105654 . + . ID=Physo144074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1640029;logic_name=jgi_physo1_1 scaffold_164 ensembl transcript 104421 105654 . + . ID=Physo144074;Parent=Physo144074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_164 . exon 104421 105607 . + . ID=Physo144074.1;Parent=Physo144074;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_164 . CDS 104628 105607 . + 0 ID=Physo144074;Parent=Physo144074;rank=1 scaffold_164 . CDS 105648 105654 . + 0 ID=Physo144074;Parent=Physo144074;rank=2 scaffold_164 . exon 105648 105654 . + . ID=Physo144074.2;Parent=Physo144074;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_163 1 107474 scaffold_163 . biological_region 87 90 0.999 - . logic_name=eponine scaffold_163 . repeat_region 4085 4177 . ? . description=trf scaffold_163 . repeat_region 4085 4177 . ? . description=trf scaffold_163 . biological_region 4158 4159 0.999 - . logic_name=eponine scaffold_163 . biological_region 6087 6090 0.999 + . logic_name=eponine scaffold_163 . repeat_region 8637 8652 . ? . description=dust scaffold_163 . biological_region 8667 8676 0.999 + . logic_name=eponine scaffold_163 . repeat_region 9004 9015 . ? . description=dust scaffold_163 . repeat_region 9080 9141 . ? . description=trf scaffold_163 ensembl protein_coding_gene 1014 1958 . - . ID=Physo109602;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1630001;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 1014 1958 . - . ID=Physo109602;Parent=Physo109602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 1014 1958 . - 0 ID=Physo109602;Parent=Physo109602;rank=1 scaffold_163 . exon 1014 1958 . - . ID=Physo109602.1;Parent=Physo109602;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 2088 4812 . - . ID=Physo144028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630002;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 2088 4812 . - . ID=Physo144028;Parent=Physo144028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . exon 2088 2865 . - . ID=Physo144028.3;Parent=Physo144028;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_163 . CDS 2090 2865 . - 0 ID=Physo144028;Parent=Physo144028;rank=3 scaffold_163 . CDS 3028 3581 . - 0 ID=Physo144028;Parent=Physo144028;rank=2 scaffold_163 . exon 3028 3581 . - . ID=Physo144028.2;Parent=Physo144028;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_163 . CDS 3632 4812 . - 0 ID=Physo144028;Parent=Physo144028;rank=1 scaffold_163 . exon 3632 4812 . - . ID=Physo144028.1;Parent=Physo144028;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_163 ensembl protein_coding_gene 9288 10127 . + . ID=Physo144029;biotype=protein_coding;description=PsAvh172 [Source:UniProtKB/TrEMBL%3BAcc:E0W5P4];external_name=estExt_fgenesh1_pg.C_1630003;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 9288 10127 . + . ID=Physo144029;Parent=Physo144029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 9288 9971 . + 0 ID=Physo144029;Parent=Physo144029;rank=1 scaffold_163 . exon 9288 10127 . + . ID=Physo144029.1;Parent=Physo144029;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_163 ensembl protein_coding_gene 11599 13561 . - . ID=Physo144030;biotype=protein_coding;description=PsAvh160 [Source:UniProtKB/TrEMBL%3BAcc:E0W5P5];external_name=estExt_fgenesh1_pg.C_1630004;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 11599 13561 . - . ID=Physo144030;Parent=Physo144030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 11599 11637 . - 0 ID=Physo144030;Parent=Physo144030;rank=2 scaffold_163 . exon 11599 11637 . - . ID=Physo144030.2;Parent=Physo144030;constitutive=1;rank=2 scaffold_163 . CDS 11948 13561 . - 0 ID=Physo144030;Parent=Physo144030;rank=1 scaffold_163 . exon 11948 13561 . - . ID=Physo144030.1;Parent=Physo144030;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 15185 15826 . - . ID=Physo144031;biotype=protein_coding;description=PsAvh170 [Source:UniProtKB/TrEMBL%3BAcc:E0W5P6];external_name=estExt_fgenesh1_pg.C_1630005;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 15185 15826 . - . ID=Physo144031;Parent=Physo144031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 15185 15826 . - 0 ID=Physo144031;Parent=Physo144031;rank=1 scaffold_163 . exon 15185 15826 . - . ID=Physo144031.1;Parent=Physo144031;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 17365 18033 . - . ID=Physo144032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630006;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 17365 18033 . - . ID=Physo144032;Parent=Physo144032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 17365 17619 . - 0 ID=Physo144032;Parent=Physo144032;rank=2 scaffold_163 . exon 17365 17619 . - . ID=Physo144032.2;Parent=Physo144032;constitutive=1;rank=2 scaffold_163 . CDS 17722 18033 . - 0 ID=Physo144032;Parent=Physo144032;rank=1 scaffold_163 . exon 17722 18033 . - . ID=Physo144032.1;Parent=Physo144032;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 19225 19632 . + . ID=Physo144033;biotype=protein_coding;description=Elicitin-like protein SOL11E [Source:UniProtKB/TrEMBL%3BAcc:Q2N074];external_name=estExt_fgenesh1_pg.C_1630007;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 19225 19632 . + . ID=Physo144033;Parent=Physo144033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 19225 19632 . + 0 ID=Physo144033;Parent=Physo144033;rank=1 scaffold_163 . exon 19225 19632 . + . ID=Physo144033.1;Parent=Physo144033;constitutive=1;rank=1 scaffold_163 . repeat_region 22306 22315 . ? . description=dust scaffold_163 . biological_region 23793 23797 0.999 - . logic_name=eponine scaffold_163 . biological_region 24510 24514 0.999 + . logic_name=eponine scaffold_163 . repeat_region 24948 24974 . ? . description=trf scaffold_163 . biological_region 25488 25491 0.999 + . logic_name=eponine scaffold_163 . biological_region 28413 28415 0.999 - . logic_name=eponine scaffold_163 ensembl protein_coding_gene 19806 21116 . + . ID=Physo144034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630008;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 19806 21116 . + . ID=Physo144034;Parent=Physo144034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . exon 19806 19916 . + . ID=Physo144034.1;Parent=Physo144034;constitutive=1;ensembl_phase=-1;rank=1 scaffold_163 . CDS 19821 19916 . + 0 ID=Physo144034;Parent=Physo144034;rank=1 scaffold_163 . CDS 20010 20085 . + 0 ID=Physo144034;Parent=Physo144034;rank=2 scaffold_163 . exon 20010 20085 . + . ID=Physo144034.2;Parent=Physo144034;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_163 . CDS 20171 20772 . + 0 ID=Physo144034;Parent=Physo144034;rank=3 scaffold_163 . exon 20171 21116 . + . ID=Physo144034.3;Parent=Physo144034;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_163 ensembl protein_coding_gene 24060 25717 . - . ID=Physo144035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630009;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 24060 25717 . - . ID=Physo144035;Parent=Physo144035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 24060 24997 . - 0 ID=Physo144035;Parent=Physo144035;rank=3 scaffold_163 . exon 24060 24997 . - . ID=Physo144035.3;Parent=Physo144035;constitutive=1;ensembl_phase=1;rank=3 scaffold_163 . CDS 25067 25274 . - 0 ID=Physo144035;Parent=Physo144035;rank=2 scaffold_163 . exon 25067 25274 . - . ID=Physo144035.2;Parent=Physo144035;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_163 . CDS 25365 25598 . - 0 ID=Physo144035;Parent=Physo144035;rank=1 scaffold_163 . exon 25365 25717 . - . ID=Physo144035.1;Parent=Physo144035;constitutive=1;ensembl_phase=-1;rank=1 scaffold_163 ensembl protein_coding_gene 27285 28624 . + . ID=Physo144036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630010;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 27285 28624 . + . ID=Physo144036;Parent=Physo144036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 27285 27770 . + 0 ID=Physo144036;Parent=Physo144036;rank=1 scaffold_163 . exon 27285 27770 . + . ID=Physo144036.1;Parent=Physo144036;constitutive=1;rank=1 scaffold_163 . CDS 28080 28524 . + 0 ID=Physo144036;Parent=Physo144036;rank=2 scaffold_163 . exon 28080 28524 . + . ID=Physo144036.2;Parent=Physo144036;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_163 . CDS 28596 28624 . + 0 ID=Physo144036;Parent=Physo144036;rank=3 scaffold_163 . exon 28596 28624 . + . ID=Physo144036.3;Parent=Physo144036;constitutive=1;ensembl_phase=1;rank=3 scaffold_163 ensembl protein_coding_gene 29660 38075 . - . ID=Physo144037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630011;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 29660 38075 . - . ID=Physo144037;Parent=Physo144037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 29660 29701 . - 0 ID=Physo144037;Parent=Physo144037;rank=13 scaffold_163 . exon 29660 29701 . - . ID=Physo144037.13;Parent=Physo144037;constitutive=1;rank=13 scaffold_163 . CDS 29841 30208 . - 0 ID=Physo144037;Parent=Physo144037;rank=12 scaffold_163 . exon 29841 30208 . - . ID=Physo144037.12;Parent=Physo144037;constitutive=1;ensembl_phase=1;rank=12 scaffold_163 . CDS 30283 30444 . - 0 ID=Physo144037;Parent=Physo144037;rank=11 scaffold_163 . exon 30283 30444 . - . ID=Physo144037.11;Parent=Physo144037;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_163 . CDS 30527 30907 . - 0 ID=Physo144037;Parent=Physo144037;rank=10 scaffold_163 . exon 30527 30907 . - . ID=Physo144037.10;Parent=Physo144037;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_163 . CDS 31274 31766 . - 0 ID=Physo144037;Parent=Physo144037;rank=9 scaffold_163 . exon 31274 31766 . - . ID=Physo144037.9;Parent=Physo144037;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_163 . CDS 31839 32286 . - 0 ID=Physo144037;Parent=Physo144037;rank=8 scaffold_163 . exon 31839 32286 . - . ID=Physo144037.8;Parent=Physo144037;constitutive=1;ensembl_phase=2;rank=8 scaffold_163 . CDS 32595 36244 . - 0 ID=Physo144037;Parent=Physo144037;rank=7 scaffold_163 . exon 32595 36244 . - . ID=Physo144037.7;Parent=Physo144037;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_163 . CDS 36296 37093 . - 0 ID=Physo144037;Parent=Physo144037;rank=6 scaffold_163 . exon 36296 37093 . - . ID=Physo144037.6;Parent=Physo144037;constitutive=1;rank=6 scaffold_163 . CDS 37172 37235 . - 0 ID=Physo144037;Parent=Physo144037;rank=5 scaffold_163 . exon 37172 37235 . - . ID=Physo144037.5;Parent=Physo144037;constitutive=1;ensembl_phase=2;rank=5 scaffold_163 . CDS 37326 37461 . - 0 ID=Physo144037;Parent=Physo144037;rank=4 scaffold_163 . exon 37326 37461 . - . ID=Physo144037.4;Parent=Physo144037;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_163 . CDS 37526 37664 . - 0 ID=Physo144037;Parent=Physo144037;rank=3 scaffold_163 . exon 37526 37664 . - . ID=Physo144037.3;Parent=Physo144037;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_163 . CDS 37734 37764 . - 0 ID=Physo144037;Parent=Physo144037;rank=2 scaffold_163 . exon 37734 37764 . - . ID=Physo144037.2;Parent=Physo144037;constitutive=1;ensembl_phase=2;rank=2 scaffold_163 . CDS 37996 38075 . - 0 ID=Physo144037;Parent=Physo144037;rank=1 scaffold_163 . exon 37996 38075 . - . ID=Physo144037.1;Parent=Physo144037;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_163 ensembl protein_coding_gene 38395 38928 . - . ID=Physo144038;biotype=protein_coding;description=PsAvh248 [Source:UniProtKB/TrEMBL%3BAcc:E0W5P7];external_name=estExt_fgenesh1_pg.C_1630012;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 38395 38928 . - . ID=Physo144038;Parent=Physo144038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 38395 38928 . - 0 ID=Physo144038;Parent=Physo144038;rank=1 scaffold_163 . exon 38395 38928 . - . ID=Physo144038.1;Parent=Physo144038;constitutive=1;rank=1 scaffold_163 . repeat_region 39923 39932 . ? . description=dust scaffold_163 . biological_region 40008 40008 0.999 + . logic_name=eponine scaffold_163 . biological_region 41722 41723 0.999 + . logic_name=eponine scaffold_163 . repeat_region 45387 45441 . ? . description=trf scaffold_163 . repeat_region 45650 45661 . ? . description=dust scaffold_163 ensembl protein_coding_gene 45190 45591 . - . ID=Physo144039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630013;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 45190 45591 . - . ID=Physo144039;Parent=Physo144039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 45190 45591 . - 0 ID=Physo144039;Parent=Physo144039;rank=1 scaffold_163 . exon 45190 45591 . - . ID=Physo144039.1;Parent=Physo144039;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 54918 56027 . - . ID=Physo109603;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1630002;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 54918 56027 . - . ID=Physo109603;Parent=Physo109603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 54918 56027 . - 0 ID=Physo109603;Parent=Physo109603;rank=1 scaffold_163 . exon 54918 56027 . - . ID=Physo109603.1;Parent=Physo109603;constitutive=1;rank=1 scaffold_163 ensembl protein_coding_gene 52527 54728 . + . ID=Physo144040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630014;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 52527 54728 . + . ID=Physo144040;Parent=Physo144040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 52527 54427 . + 0 ID=Physo144040;Parent=Physo144040;rank=1 scaffold_163 . exon 52527 54427 . + . ID=Physo144040.1;Parent=Physo144040;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_163 . CDS 54551 54728 . + 0 ID=Physo144040;Parent=Physo144040;rank=2 scaffold_163 . exon 54551 54728 . + . ID=Physo144040.2;Parent=Physo144040;constitutive=1;ensembl_phase=2;rank=2 scaffold_163 . repeat_region 67450 67516 . + . description=GypsyPi-1c_I-int scaffold_163 . repeat_region 67984 68033 . ? . description=dust scaffold_163 . biological_region 68261 68265 0.999 + . logic_name=eponine scaffold_163 . biological_region 68284 68288 0.999 - . logic_name=eponine scaffold_163 . biological_region 68341 68343 0.999 + . logic_name=eponine scaffold_163 ensembl protein_coding_gene 70622 72698 . - . ID=Physo144042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630016;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 70622 72698 . - . ID=Physo144042;Parent=Physo144042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 70622 71652 . - 0 ID=Physo144042;Parent=Physo144042;rank=3 scaffold_163 . exon 70622 71652 . - . ID=Physo144042.3;Parent=Physo144042;constitutive=1;ensembl_phase=1;rank=3 scaffold_163 . CDS 71761 72389 . - 0 ID=Physo144042;Parent=Physo144042;rank=2 scaffold_163 . exon 71761 72389 . - . ID=Physo144042.2;Parent=Physo144042;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_163 . CDS 72493 72698 . - 0 ID=Physo144042;Parent=Physo144042;rank=1 scaffold_163 . exon 72493 72698 . - . ID=Physo144042.1;Parent=Physo144042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_163 ensembl protein_coding_gene 75484 78779 . + . ID=Physo144043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630017;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 75484 78779 . + . ID=Physo144043;Parent=Physo144043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 75484 75517 . + 0 ID=Physo144043;Parent=Physo144043;rank=1 scaffold_163 . exon 75484 75517 . + . ID=Physo144043.1;Parent=Physo144043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_163 . CDS 75576 76018 . + 0 ID=Physo144043;Parent=Physo144043;rank=2 scaffold_163 . exon 75576 76018 . + . ID=Physo144043.2;Parent=Physo144043;constitutive=1;ensembl_phase=1;rank=2 scaffold_163 . CDS 76101 77528 . + 0 ID=Physo144043;Parent=Physo144043;rank=3 scaffold_163 . exon 76101 77528 . + . ID=Physo144043.3;Parent=Physo144043;constitutive=1;rank=3 scaffold_163 . CDS 77565 78091 . + 0 ID=Physo144043;Parent=Physo144043;rank=4 scaffold_163 . exon 77565 78091 . + . ID=Physo144043.4;Parent=Physo144043;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_163 . CDS 78330 78617 . + 0 ID=Physo144043;Parent=Physo144043;rank=5 scaffold_163 . CDS 78716 78779 . + 0 ID=Physo144043;Parent=Physo144043;rank=6 scaffold_163 . repeat_region 78295 78401 . ? . description=trf scaffold_163 . biological_region 79636 79636 0.999 + . logic_name=eponine scaffold_163 . biological_region 79672 79676 0.999 - . logic_name=eponine scaffold_163 . repeat_region 80470 80518 . ? . description=trf scaffold_163 . repeat_region 80625 80666 . ? . description=trf scaffold_163 . repeat_region 81000 81056 . ? . description=dust scaffold_163 . repeat_region 83420 83469 . ? . description=dust scaffold_163 . repeat_region 87107 87140 . ? . description=trf scaffold_163 . exon 78330 78617 . + . ID=Physo144043.5;Parent=Physo144043;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_163 . exon 78716 78779 . + . ID=Physo144043.6;Parent=Physo144043;constitutive=1;ensembl_phase=2;rank=6 scaffold_163 . repeat_region 89329 90571 . + . description=Gypsy-1-I_PI-int scaffold_163 . repeat_region 91317 91640 . + . description=Gypsy-1-I_PI-int scaffold_163 ensembl protein_coding_gene 93419 93802 . - . ID=Physo144044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630018;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 93419 93802 . - . ID=Physo144044;Parent=Physo144044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 93419 93799 . - 0 ID=Physo144044;Parent=Physo144044;rank=1 scaffold_163 . exon 93419 93802 . - . ID=Physo144044.1;Parent=Physo144044;constitutive=1;ensembl_phase=-1;rank=1 scaffold_163 ensembl protein_coding_gene 94876 95421 . - . ID=Physo144045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1630019;logic_name=jgi_physo1_1 scaffold_163 ensembl transcript 94876 95421 . - . ID=Physo144045;Parent=Physo144045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_163 . CDS 94876 95421 . - 0 ID=Physo144045;Parent=Physo144045;rank=1 scaffold_163 . exon 94876 95421 . - . ID=Physo144045.1;Parent=Physo144045;constitutive=1;rank=1 scaffold_163 . repeat_region 95796 106216 . ? . description=dust scaffold_163 . biological_region 106282 106288 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_162 1 108021 scaffold_162 . repeat_region 1376 1425 . ? . description=dust scaffold_162 . biological_region 1597 1599 0.999 - . logic_name=eponine scaffold_162 . repeat_region 2404 2453 . ? . description=dust scaffold_162 . biological_region 2545 2549 0.999 + . logic_name=eponine scaffold_162 . biological_region 2577 2580 0.999 + . logic_name=eponine scaffold_162 . repeat_region 2796 2835 . ? . description=trf scaffold_162 . biological_region 2927 2927 0.999 + . logic_name=eponine scaffold_162 . biological_region 3750 3752 0.999 - . logic_name=eponine scaffold_162 . biological_region 3868 3873 0.999 + . logic_name=eponine scaffold_162 . biological_region 3897 3898 0.999 - . logic_name=eponine scaffold_162 . biological_region 3909 3912 0.999 + . logic_name=eponine scaffold_162 . biological_region 3970 3974 0.999 + . logic_name=eponine scaffold_162 . biological_region 3997 4004 0.999 - . logic_name=eponine scaffold_162 . biological_region 4025 4026 0.999 - . logic_name=eponine scaffold_162 . biological_region 4079 4082 0.999 - . logic_name=eponine scaffold_162 . biological_region 4494 4501 0.999 - . logic_name=eponine scaffold_162 . biological_region 4698 4703 0.999 - . logic_name=eponine scaffold_162 . biological_region 4755 4757 0.999 + . logic_name=eponine scaffold_162 . biological_region 5208 5208 0.999 - . logic_name=eponine scaffold_162 . biological_region 5276 5276 0.999 - . logic_name=eponine scaffold_162 . biological_region 5483 5489 0.999 + . logic_name=eponine scaffold_162 . repeat_region 5589 5645 . ? . description=trf scaffold_162 . biological_region 5590 5595 0.999 - . logic_name=eponine scaffold_162 . biological_region 5637 5640 0.999 - . logic_name=eponine scaffold_162 . biological_region 5691 5694 0.999 - . logic_name=eponine scaffold_162 . biological_region 5997 6003 0.999 - . logic_name=eponine scaffold_162 . biological_region 6016 6016 0.999 - . logic_name=eponine scaffold_162 . repeat_region 6359 6408 . ? . description=dust scaffold_162 . biological_region 6970 6970 0.999 + . logic_name=eponine scaffold_162 . repeat_region 7261 7315 . ? . description=trf scaffold_162 . biological_region 7321 7324 0.999 + . logic_name=eponine scaffold_162 . biological_region 7348 7349 0.999 + . logic_name=eponine scaffold_162 . biological_region 7368 7369 0.999 + . logic_name=eponine scaffold_162 . biological_region 7397 7399 0.999 + . logic_name=eponine scaffold_162 . biological_region 7401 7407 0.999 - . logic_name=eponine scaffold_162 . repeat_region 7458 7504 . ? . description=trf scaffold_162 . biological_region 7486 7491 0.999 + . logic_name=eponine scaffold_162 . biological_region 7504 7509 0.999 - . logic_name=eponine scaffold_162 . biological_region 7927 7933 0.999 - . logic_name=eponine scaffold_162 . biological_region 8199 8201 0.999 + . logic_name=eponine scaffold_162 . repeat_region 8266 8315 . ? . description=dust scaffold_162 . biological_region 9052 9054 0.999 - . logic_name=eponine scaffold_162 . biological_region 9170 9175 0.999 + . logic_name=eponine scaffold_162 . biological_region 9199 9200 0.999 - . logic_name=eponine scaffold_162 . biological_region 9211 9214 0.999 + . logic_name=eponine scaffold_162 . biological_region 9272 9276 0.999 + . logic_name=eponine scaffold_162 . biological_region 9299 9306 0.999 - . logic_name=eponine scaffold_162 . biological_region 9327 9328 0.999 - . logic_name=eponine scaffold_162 . biological_region 9381 9384 0.999 - . logic_name=eponine scaffold_162 . biological_region 9796 9803 0.999 - . logic_name=eponine scaffold_162 ensembl protein_coding_gene 150 3098 . + . ID=Physo144004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620001;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 150 3098 . + . ID=Physo144004;Parent=Physo144004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 150 323 . + 0 ID=Physo144004;Parent=Physo144004;rank=1 scaffold_162 . exon 150 323 . + . ID=Physo144004.1;Parent=Physo144004;constitutive=1;rank=1 scaffold_162 . CDS 395 1274 . + 0 ID=Physo144004;Parent=Physo144004;rank=2 scaffold_162 . exon 395 1274 . + . ID=Physo144004.2;Parent=Physo144004;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_162 . CDS 1440 2340 . + 0 ID=Physo144004;Parent=Physo144004;rank=3 scaffold_162 . exon 1440 2340 . + . ID=Physo144004.3;Parent=Physo144004;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_162 . CDS 2813 3098 . + 0 ID=Physo144004;Parent=Physo144004;rank=4 scaffold_162 . exon 2813 3098 . + . ID=Physo144004.4;Parent=Physo144004;constitutive=1;ensembl_phase=2;rank=4 scaffold_162 ensembl protein_coding_gene 10327 14726 . - . ID=Physo144005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620002;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 10327 14726 . - . ID=Physo144005;Parent=Physo144005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 10327 12036 . - 0 ID=Physo144005;Parent=Physo144005;rank=3 scaffold_162 . exon 10327 12036 . - . ID=Physo144005.3;Parent=Physo144005;constitutive=1;rank=3 scaffold_162 . CDS 12076 13044 . - 0 ID=Physo144005;Parent=Physo144005;rank=2 scaffold_162 . exon 12076 13044 . - . ID=Physo144005.2;Parent=Physo144005;constitutive=1;rank=2 scaffold_162 . CDS 13098 14726 . - 0 ID=Physo144005;Parent=Physo144005;rank=1 scaffold_162 . exon 13098 14726 . - . ID=Physo144005.1;Parent=Physo144005;constitutive=1;rank=1 scaffold_162 ensembl protein_coding_gene 15789 20852 . + . ID=Physo144006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620003;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 15789 20852 . + . ID=Physo144006;Parent=Physo144006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 15789 15912 . + 0 ID=Physo144006;Parent=Physo144006;rank=1 scaffold_162 . exon 15789 15912 . + . ID=Physo144006.1;Parent=Physo144006;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_162 . CDS 15984 16295 . + 0 ID=Physo144006;Parent=Physo144006;rank=2 scaffold_162 . exon 15984 16295 . + . ID=Physo144006.2;Parent=Physo144006;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_162 . CDS 16552 16718 . + 0 ID=Physo144006;Parent=Physo144006;rank=3 scaffold_162 . exon 16552 16718 . + . ID=Physo144006.3;Parent=Physo144006;constitutive=1;ensembl_phase=1;rank=3 scaffold_162 . CDS 17006 17065 . + 0 ID=Physo144006;Parent=Physo144006;rank=4 scaffold_162 . exon 17006 17065 . + . ID=Physo144006.4;Parent=Physo144006;constitutive=1;rank=4 scaffold_162 . CDS 17272 17718 . + 0 ID=Physo144006;Parent=Physo144006;rank=5 scaffold_162 . exon 17272 17718 . + . ID=Physo144006.5;Parent=Physo144006;constitutive=1;rank=5 scaffold_162 . CDS 17940 20852 . + 0 ID=Physo144006;Parent=Physo144006;rank=6 scaffold_162 . exon 17940 20852 . + . ID=Physo144006.6;Parent=Physo144006;constitutive=1;rank=6 scaffold_162 . repeat_region 24561 24611 . ? . description=trf scaffold_162 . biological_region 26958 26958 0.999 + . logic_name=eponine scaffold_162 . biological_region 28033 28035 0.999 - . logic_name=eponine scaffold_162 ensembl protein_coding_gene 24152 27410 . - . ID=Physo144007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620004;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 24152 27410 . - . ID=Physo144007;Parent=Physo144007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 24152 24945 . - 0 ID=Physo144007;Parent=Physo144007;rank=5 scaffold_162 . exon 24152 24945 . - . ID=Physo144007.5;Parent=Physo144007;constitutive=1;ensembl_phase=1;rank=5 scaffold_162 . CDS 25241 25627 . - 0 ID=Physo144007;Parent=Physo144007;rank=4 scaffold_162 . exon 25241 25627 . - . ID=Physo144007.4;Parent=Physo144007;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_162 . CDS 25705 27010 . - 0 ID=Physo144007;Parent=Physo144007;rank=3 scaffold_162 . exon 25705 27010 . - . ID=Physo144007.3;Parent=Physo144007;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_162 . CDS 27050 27310 . - 0 ID=Physo144007;Parent=Physo144007;rank=2 scaffold_162 . exon 27050 27310 . - . ID=Physo144007.2;Parent=Physo144007;constitutive=1;rank=2 scaffold_162 . CDS 27378 27410 . - 0 ID=Physo144007;Parent=Physo144007;rank=1 scaffold_162 . exon 27378 27410 . - . ID=Physo144007.1;Parent=Physo144007;constitutive=1;rank=1 scaffold_162 . repeat_region 29952 29959 . ? . description=dust scaffold_162 . repeat_region 35209 35224 . ? . description=dust scaffold_162 . repeat_region 36284 36326 . ? . description=dust scaffold_162 ensembl protein_coding_gene 31989 32571 . + . ID=Physo109600;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1620001;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 31989 32571 . + . ID=Physo109600;Parent=Physo109600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 31989 32513 . + 0 ID=Physo109600;Parent=Physo109600;rank=1 scaffold_162 . exon 31989 32571 . + . ID=Physo109600.1;Parent=Physo109600;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_162 ensembl protein_coding_gene 31200 32017 . + . ID=Physo144008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620005;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 31200 32017 . + . ID=Physo144008;Parent=Physo144008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 31200 31335 . + 0 ID=Physo144008;Parent=Physo144008;rank=1 scaffold_162 . exon 31200 31335 . + . ID=Physo144008.1;Parent=Physo144008;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_162 . CDS 31403 31503 . + 0 ID=Physo144008;Parent=Physo144008;rank=2 scaffold_162 . exon 31403 31503 . + . ID=Physo144008.2;Parent=Physo144008;constitutive=1;ensembl_phase=1;rank=2 scaffold_162 . CDS 31584 32015 . + 0 ID=Physo144008;Parent=Physo144008;rank=3 scaffold_162 . exon 31584 32017 . + . ID=Physo144008.3;Parent=Physo144008;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_162 ensembl protein_coding_gene 32690 38208 . + . ID=Physo158858;biotype=protein_coding;external_name=C_scaffold_162000001;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 32690 38208 . + . ID=Physo158858;Parent=Physo158858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 32690 32810 . + 0 ID=Physo158858;Parent=Physo158858;rank=1 scaffold_162 . exon 32690 32810 . + . ID=Physo158858.1;Parent=Physo158858;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_162 . CDS 32958 33169 . + 0 ID=Physo158858;Parent=Physo158858;rank=2 scaffold_162 . exon 32958 33169 . + . ID=Physo158858.2;Parent=Physo158858;constitutive=1;ensembl_phase=1;rank=2 scaffold_162 . CDS 33254 33856 . + 0 ID=Physo158858;Parent=Physo158858;rank=3 scaffold_162 . exon 33254 33856 . + . ID=Physo158858.3;Parent=Physo158858;constitutive=1;rank=3 scaffold_162 . CDS 33893 34105 . + 0 ID=Physo158858;Parent=Physo158858;rank=4 scaffold_162 . exon 33893 34105 . + . ID=Physo158858.4;Parent=Physo158858;constitutive=1;rank=4 scaffold_162 . CDS 34184 34756 . + 0 ID=Physo158858;Parent=Physo158858;rank=5 scaffold_162 . exon 34184 34756 . + . ID=Physo158858.5;Parent=Physo158858;constitutive=1;rank=5 scaffold_162 . CDS 35242 35790 . + 0 ID=Physo158858;Parent=Physo158858;rank=6 scaffold_162 . exon 35242 35790 . + . ID=Physo158858.6;Parent=Physo158858;constitutive=1;rank=6 scaffold_162 . CDS 35870 35981 . + 0 ID=Physo158858;Parent=Physo158858;rank=7 scaffold_162 . exon 35870 35981 . + . ID=Physo158858.7;Parent=Physo158858;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_162 . CDS 36221 36325 . + 0 ID=Physo158858;Parent=Physo158858;rank=8 scaffold_162 . exon 36221 36325 . + . ID=Physo158858.8;Parent=Physo158858;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_162 . CDS 36398 36700 . + 0 ID=Physo158858;Parent=Physo158858;rank=9 scaffold_162 . exon 36398 36700 . + . ID=Physo158858.9;Parent=Physo158858;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_162 . CDS 36774 37023 . + 0 ID=Physo158858;Parent=Physo158858;rank=10 scaffold_162 . exon 36774 37023 . + . ID=Physo158858.10;Parent=Physo158858;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_162 . CDS 37148 37413 . + 0 ID=Physo158858;Parent=Physo158858;rank=11 scaffold_162 . exon 37148 37413 . + . ID=Physo158858.11;Parent=Physo158858;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_162 . CDS 37465 37586 . + 0 ID=Physo158858;Parent=Physo158858;rank=12 scaffold_162 . exon 37465 37586 . + . ID=Physo158858.12;Parent=Physo158858;constitutive=1;ensembl_phase=1;rank=12 scaffold_162 . CDS 37658 37986 . + 0 ID=Physo158858;Parent=Physo158858;rank=13 scaffold_162 . exon 37658 37986 . + . ID=Physo158858.13;Parent=Physo158858;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_162 . CDS 38008 38208 . + 0 ID=Physo158858;Parent=Physo158858;rank=14 scaffold_162 . exon 38008 38208 . + . ID=Physo158858.14;Parent=Physo158858;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=14 scaffold_162 . biological_region 41532 41535 0.999 + . logic_name=eponine scaffold_162 . biological_region 42507 42510 0.999 - . logic_name=eponine scaffold_162 . biological_region 42562 42565 0.999 - . logic_name=eponine scaffold_162 . repeat_region 42918 42948 . ? . description=trf scaffold_162 . biological_region 46579 46583 0.999 + . logic_name=eponine scaffold_162 . biological_region 46648 46649 0.999 - . logic_name=eponine scaffold_162 . biological_region 48180 48185 0.999 + . logic_name=eponine scaffold_162 . biological_region 48216 48225 0.999 + . logic_name=eponine scaffold_162 . biological_region 48257 48262 0.999 + . logic_name=eponine scaffold_162 . biological_region 48337 48337 0.999 - . logic_name=eponine scaffold_162 . biological_region 48421 48427 0.999 + . logic_name=eponine scaffold_162 . biological_region 48446 48453 0.999 + . logic_name=eponine scaffold_162 . biological_region 48453 48458 0.999 - . logic_name=eponine scaffold_162 . biological_region 48479 48485 0.999 - . logic_name=eponine scaffold_162 . repeat_region 48684 48714 . ? . description=trf scaffold_162 . biological_region 48916 48919 0.999 + . logic_name=eponine scaffold_162 . biological_region 48929 48933 0.999 - . logic_name=eponine scaffold_162 . biological_region 48943 48950 0.999 - . logic_name=eponine scaffold_162 . biological_region 48983 48987 0.999 - . logic_name=eponine scaffold_162 . biological_region 48999 49006 0.999 + . logic_name=eponine scaffold_162 . biological_region 49053 49054 0.999 - . logic_name=eponine scaffold_162 . biological_region 49077 49080 0.999 + . logic_name=eponine scaffold_162 ensembl protein_coding_gene 39820 41463 . + . ID=Physo158859;biotype=protein_coding;external_name=C_scaffold_162000002;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 39820 41463 . + . ID=Physo158859;Parent=Physo158859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 39820 40182 . + 0 ID=Physo158859;Parent=Physo158859;rank=1 scaffold_162 . exon 39820 40182 . + . ID=Physo158859.1;Parent=Physo158859;constitutive=1;rank=1 scaffold_162 . CDS 40726 40728 . + 0 ID=Physo158859;Parent=Physo158859;rank=2 scaffold_162 . exon 40726 40728 . + . ID=Physo158859.2;Parent=Physo158859;constitutive=1;rank=2 scaffold_162 . CDS 40759 41463 . + 0 ID=Physo158859;Parent=Physo158859;rank=3 scaffold_162 . exon 40759 41463 . + . ID=Physo158859.3;Parent=Physo158859;constitutive=1;rank=3 scaffold_162 ensembl protein_coding_gene 41663 48541 . - . ID=Physo158860;biotype=protein_coding;external_name=C_scaffold_162000003;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 41663 48541 . - . ID=Physo158860;Parent=Physo158860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 41663 41703 . - 0 ID=Physo158860;Parent=Physo158860;rank=11 scaffold_162 . exon 41663 41703 . - . ID=Physo158860.11;Parent=Physo158860;constitutive=1;ensembl_phase=1;rank=11 scaffold_162 . CDS 41765 42219 . - 0 ID=Physo158860;Parent=Physo158860;rank=10 scaffold_162 . exon 41765 42219 . - . ID=Physo158860.10;Parent=Physo158860;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_162 . CDS 42281 42749 . - 0 ID=Physo158860;Parent=Physo158860;rank=9 scaffold_162 . exon 42281 42749 . - . ID=Physo158860.9;Parent=Physo158860;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_162 . CDS 42856 43132 . - 0 ID=Physo158860;Parent=Physo158860;rank=8 scaffold_162 . exon 42856 43132 . - . ID=Physo158860.8;Parent=Physo158860;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_162 . CDS 43193 43261 . - 0 ID=Physo158860;Parent=Physo158860;rank=7 scaffold_162 . exon 43193 43261 . - . ID=Physo158860.7;Parent=Physo158860;constitutive=1;rank=7 scaffold_162 . CDS 43329 43479 . - 0 ID=Physo158860;Parent=Physo158860;rank=6 scaffold_162 . exon 43329 43479 . - . ID=Physo158860.6;Parent=Physo158860;constitutive=1;ensembl_phase=2;rank=6 scaffold_162 . CDS 43608 43955 . - 0 ID=Physo158860;Parent=Physo158860;rank=5 scaffold_162 . exon 43608 43955 . - . ID=Physo158860.5;Parent=Physo158860;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_162 . CDS 44019 44191 . - 0 ID=Physo158860;Parent=Physo158860;rank=4 scaffold_162 . exon 44019 44191 . - . ID=Physo158860.4;Parent=Physo158860;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_162 . CDS 44225 46879 . - 0 ID=Physo158860;Parent=Physo158860;rank=3 scaffold_162 . exon 44225 46879 . - . ID=Physo158860.3;Parent=Physo158860;constitutive=1;rank=3 scaffold_162 . CDS 46910 48179 . - 0 ID=Physo158860;Parent=Physo158860;rank=2 scaffold_162 . exon 46910 48179 . - . ID=Physo158860.2;Parent=Physo158860;constitutive=1;ensembl_phase=2;rank=2 scaffold_162 . CDS 48378 48541 . - 0 ID=Physo158860;Parent=Physo158860;rank=1 scaffold_162 . exon 48378 48541 . - . ID=Physo158860.1;Parent=Physo158860;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_162 . repeat_region 57476 57500 . ? . description=dust scaffold_162 . repeat_region 58909 58921 . ? . description=dust scaffold_162 ensembl protein_coding_gene 49321 50683 . + . ID=Physo144012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620009;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 49321 50683 . + . ID=Physo144012;Parent=Physo144012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . exon 49321 50683 . + . ID=Physo144012.1;Parent=Physo144012;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_162 . CDS 49337 50608 . + 0 ID=Physo144012;Parent=Physo144012;rank=1 scaffold_162 ensembl protein_coding_gene 50697 54306 . - . ID=Physo144013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620010;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 50697 54306 . - . ID=Physo144013;Parent=Physo144013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 50697 53176 . - 0 ID=Physo144013;Parent=Physo144013;rank=2 scaffold_162 . exon 50697 53176 . - . ID=Physo144013.2;Parent=Physo144013;constitutive=1;ensembl_phase=1;rank=2 scaffold_162 . CDS 53253 54306 . - 0 ID=Physo144013;Parent=Physo144013;rank=1 scaffold_162 . exon 53253 54306 . - . ID=Physo144013.1;Parent=Physo144013;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_162 ensembl protein_coding_gene 57129 57739 . - . ID=Physo144014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620011;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 57129 57739 . - . ID=Physo144014;Parent=Physo144014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . exon 57129 57289 . - . ID=Physo144014.3;Parent=Physo144014;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_162 . CDS 57148 57289 . - 0 ID=Physo144014;Parent=Physo144014;rank=3 scaffold_162 . CDS 57365 57462 . - 0 ID=Physo144014;Parent=Physo144014;rank=2 scaffold_162 . exon 57365 57462 . - . ID=Physo144014.2;Parent=Physo144014;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_162 . CDS 57555 57737 . - 0 ID=Physo144014;Parent=Physo144014;rank=1 scaffold_162 . exon 57555 57739 . - . ID=Physo144014.1;Parent=Physo144014;constitutive=1;ensembl_phase=-1;rank=1 scaffold_162 ensembl protein_coding_gene 57933 58823 . + . ID=Physo144015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620012;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 57933 58823 . + . ID=Physo144015;Parent=Physo144015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 57933 58823 . + 0 ID=Physo144015;Parent=Physo144015;rank=1 scaffold_162 . exon 57933 58823 . + . ID=Physo144015.1;Parent=Physo144015;constitutive=1;rank=1 scaffold_162 . biological_region 60351 60353 0.999 - . logic_name=eponine scaffold_162 . biological_region 60744 60744 0.999 + . logic_name=eponine scaffold_162 . repeat_region 61907 61931 . ? . description=trf scaffold_162 . biological_region 62684 62684 0.999 - . logic_name=eponine scaffold_162 . biological_region 62741 62743 0.999 - . logic_name=eponine scaffold_162 . biological_region 64230 64233 0.999 + . logic_name=eponine scaffold_162 . biological_region 64542 64544 0.999 + . logic_name=eponine scaffold_162 . biological_region 64561 64566 0.999 + . logic_name=eponine scaffold_162 . biological_region 64661 64663 0.999 - . logic_name=eponine scaffold_162 . biological_region 64821 64827 0.999 - . logic_name=eponine scaffold_162 . biological_region 65711 65714 0.999 - . logic_name=eponine scaffold_162 . biological_region 65717 65717 0.999 + . logic_name=eponine scaffold_162 . biological_region 65739 65739 0.999 - . logic_name=eponine scaffold_162 . biological_region 65791 65794 0.999 + . logic_name=eponine scaffold_162 . biological_region 65808 65814 0.999 - . logic_name=eponine scaffold_162 . biological_region 66827 66828 0.999 + . logic_name=eponine scaffold_162 . biological_region 66845 66845 0.999 + . logic_name=eponine scaffold_162 ensembl protein_coding_gene 65666 67273 . + . ID=Physo124508;biotype=protein_coding;external_name=estExt_Genewise1.C_1620014;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 65666 67273 . + . ID=Physo124508;Parent=Physo124508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . exon 65666 66087 . + . ID=Physo124508.1;Parent=Physo124508;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_162 . CDS 65687 66087 . + 0 ID=Physo124508;Parent=Physo124508;rank=1 scaffold_162 . CDS 66174 66393 . + 0 ID=Physo124508;Parent=Physo124508;rank=2 scaffold_162 . exon 66174 66393 . + . ID=Physo124508.2;Parent=Physo124508;constitutive=1;ensembl_phase=2;rank=2 scaffold_162 . CDS 66480 66584 . + 0 ID=Physo124508;Parent=Physo124508;rank=3 scaffold_162 . exon 66480 66584 . + . ID=Physo124508.3;Parent=Physo124508;constitutive=1;rank=3 scaffold_162 . CDS 66676 67042 . + 0 ID=Physo124508;Parent=Physo124508;rank=4 scaffold_162 . exon 66676 67042 . + . ID=Physo124508.4;Parent=Physo124508;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_162 . CDS 67125 67273 . + 0 ID=Physo124508;Parent=Physo124508;rank=5 scaffold_162 . exon 67125 67273 . + . ID=Physo124508.5;Parent=Physo124508;constitutive=1;ensembl_phase=1;rank=5 scaffold_162 ensembl protein_coding_gene 59347 60490 . - . ID=Physo144016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620013;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 59347 60490 . - . ID=Physo144016;Parent=Physo144016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 59347 59655 . - 0 ID=Physo144016;Parent=Physo144016;rank=3 scaffold_162 . exon 59347 59655 . - . ID=Physo144016.3;Parent=Physo144016;constitutive=1;rank=3 scaffold_162 . CDS 59749 59956 . - 0 ID=Physo144016;Parent=Physo144016;rank=2 scaffold_162 . exon 59749 59956 . - . ID=Physo144016.2;Parent=Physo144016;constitutive=1;ensembl_phase=2;rank=2 scaffold_162 . CDS 60046 60446 . - 0 ID=Physo144016;Parent=Physo144016;rank=1 scaffold_162 . exon 60046 60490 . - . ID=Physo144016.1;Parent=Physo144016;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_162 ensembl protein_coding_gene 63910 64425 . - . ID=Physo144018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620015;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 63910 64425 . - . ID=Physo144018;Parent=Physo144018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 63910 64187 . - 0 ID=Physo144018;Parent=Physo144018;rank=2 scaffold_162 . exon 63910 64187 . - . ID=Physo144018.2;Parent=Physo144018;constitutive=1;ensembl_phase=1;rank=2 scaffold_162 . CDS 64260 64425 . - 0 ID=Physo144018;Parent=Physo144018;rank=1 scaffold_162 . exon 64260 64425 . - . ID=Physo144018.1;Parent=Physo144018;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_162 ensembl protein_coding_gene 61689 63262 . + . ID=Physo158865;biotype=protein_coding;external_name=C_scaffold_162000008;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 61689 63262 . + . ID=Physo158865;Parent=Physo158865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 61689 61777 . + 0 ID=Physo158865;Parent=Physo158865;rank=1 scaffold_162 . exon 61689 61777 . + . ID=Physo158865.1;Parent=Physo158865;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_162 . CDS 61982 62508 . + 0 ID=Physo158865;Parent=Physo158865;rank=2 scaffold_162 . exon 61982 62508 . + . ID=Physo158865.2;Parent=Physo158865;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_162 . CDS 62599 62963 . + 0 ID=Physo158865;Parent=Physo158865;rank=3 scaffold_162 . exon 62599 62963 . + . ID=Physo158865.3;Parent=Physo158865;constitutive=1;ensembl_phase=1;rank=3 scaffold_162 . CDS 63050 63262 . + 0 ID=Physo158865;Parent=Physo158865;rank=4 scaffold_162 . exon 63050 63262 . + . ID=Physo158865.4;Parent=Physo158865;constitutive=1;rank=4 scaffold_162 ensembl protein_coding_gene 64552 65152 . + . ID=Physo158867;biotype=protein_coding;external_name=C_scaffold_162000010;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 64552 65152 . + . ID=Physo158867;Parent=Physo158867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 64552 64954 . + 0 ID=Physo158867;Parent=Physo158867;rank=1 scaffold_162 . exon 64552 64954 . + . ID=Physo158867.1;Parent=Physo158867;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_162 . CDS 65045 65152 . + 0 ID=Physo158867;Parent=Physo158867;rank=2 scaffold_162 . exon 65045 65152 . + . ID=Physo158867.2;Parent=Physo158867;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_162 . repeat_region 75779 76725 . ? . description=dust scaffold_162 . repeat_region 78330 79315 . ? . description=dust scaffold_162 ensembl protein_coding_gene 73729 75378 . + . ID=Physo144022;biotype=protein_coding;description=Calcium-dependent protein 2 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U3];external_name=estExt_fgenesh1_pg.C_1620019;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 73729 75378 . + . ID=Physo144022;Parent=Physo144022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 73729 75378 . + 0 ID=Physo144022;Parent=Physo144022;rank=1 scaffold_162 . exon 73729 75378 . + . ID=Physo144022.1;Parent=Physo144022;constitutive=1;rank=1 scaffold_162 ensembl protein_coding_gene 69092 69511 . - . ID=Physo158868;biotype=protein_coding;external_name=C_scaffold_162000011;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 69092 69511 . - . ID=Physo158868;Parent=Physo158868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 69092 69511 . - 0 ID=Physo158868;Parent=Physo158868;rank=1 scaffold_162 . exon 69092 69511 . - . ID=Physo158868.1;Parent=Physo158868;constitutive=1;rank=1 scaffold_162 ensembl protein_coding_gene 69922 72386 . + . ID=Physo158869;biotype=protein_coding;external_name=C_scaffold_162000012;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 69922 72386 . + . ID=Physo158869;Parent=Physo158869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 69922 70074 . + 0 ID=Physo158869;Parent=Physo158869;rank=1 scaffold_162 . exon 69922 70074 . + . ID=Physo158869.1;Parent=Physo158869;constitutive=1;rank=1 scaffold_162 . CDS 70144 70373 . + 0 ID=Physo158869;Parent=Physo158869;rank=2 scaffold_162 . exon 70144 70373 . + . ID=Physo158869.2;Parent=Physo158869;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_162 . CDS 70447 71151 . + 0 ID=Physo158869;Parent=Physo158869;rank=3 scaffold_162 . exon 70447 71151 . + . ID=Physo158869.3;Parent=Physo158869;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_162 . CDS 71237 71602 . + 0 ID=Physo158869;Parent=Physo158869;rank=4 scaffold_162 . exon 71237 71602 . + . ID=Physo158869.4;Parent=Physo158869;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_162 . CDS 71735 72115 . + 0 ID=Physo158869;Parent=Physo158869;rank=5 scaffold_162 . exon 71735 72115 . + . ID=Physo158869.5;Parent=Physo158869;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_162 . CDS 72158 72386 . + 0 ID=Physo158869;Parent=Physo158869;rank=6 scaffold_162 . exon 72158 72386 . + . ID=Physo158869.6;Parent=Physo158869;constitutive=1;ensembl_phase=2;rank=6 scaffold_162 ensembl protein_coding_gene 72697 73392 . - . ID=Physo158871;biotype=protein_coding;external_name=C_scaffold_162000014;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 72697 73392 . - . ID=Physo158871;Parent=Physo158871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 72697 73392 . - 0 ID=Physo158871;Parent=Physo158871;rank=1 scaffold_162 . exon 72697 73392 . - . ID=Physo158871.1;Parent=Physo158871;constitutive=1;rank=1 scaffold_162 . biological_region 79949 79954 0.999 - . logic_name=eponine scaffold_162 . biological_region 80136 80139 0.999 - . logic_name=eponine scaffold_162 . biological_region 80493 80498 0.999 + . logic_name=eponine scaffold_162 ensembl protein_coding_gene 79592 81077 . + . ID=Physo144023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620020;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 79592 81077 . + . ID=Physo144023;Parent=Physo144023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 79592 80046 . + 0 ID=Physo144023;Parent=Physo144023;rank=1 scaffold_162 . exon 79592 80046 . + . ID=Physo144023.1;Parent=Physo144023;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_162 . CDS 80096 80567 . + 0 ID=Physo144023;Parent=Physo144023;rank=2 scaffold_162 . exon 80096 80567 . + . ID=Physo144023.2;Parent=Physo144023;constitutive=1;ensembl_phase=2;rank=2 scaffold_162 . CDS 80608 80622 . + 0 ID=Physo144023;Parent=Physo144023;rank=3 scaffold_162 . exon 80608 80622 . + . ID=Physo144023.3;Parent=Physo144023;constitutive=1;rank=3 scaffold_162 . CDS 80727 81077 . + 0 ID=Physo144023;Parent=Physo144023;rank=4 scaffold_162 . exon 80727 81077 . + . ID=Physo144023.4;Parent=Physo144023;constitutive=1;rank=4 scaffold_162 . repeat_region 81224 93359 . ? . description=dust scaffold_162 . repeat_region 93373 95053 . + . description=GypsyPi-1c_I-int scaffold_162 . repeat_region 97188 98986 . ? . description=dust scaffold_162 ensembl protein_coding_gene 93712 95118 . + . ID=Physo144024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620021;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 93712 95118 . + . ID=Physo144024;Parent=Physo144024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 93712 95118 . + 0 ID=Physo144024;Parent=Physo144024;rank=1 scaffold_162 . exon 93712 95118 . + . ID=Physo144024.1;Parent=Physo144024;constitutive=1;rank=1 scaffold_162 . repeat_region 100204 100311 . ? . description=trf scaffold_162 . repeat_region 100204 100386 . ? . description=trf scaffold_162 . biological_region 101541 101542 0.999 - . logic_name=eponine scaffold_162 ensembl protein_coding_gene 101417 102363 . - . ID=Physo144025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620022;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 101417 102363 . - . ID=Physo144025;Parent=Physo144025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 101417 101697 . - 0 ID=Physo144025;Parent=Physo144025;rank=4 scaffold_162 . exon 101417 101697 . - . ID=Physo144025.4;Parent=Physo144025;constitutive=1;ensembl_phase=1;rank=4 scaffold_162 . CDS 101860 102022 . - 0 ID=Physo144025;Parent=Physo144025;rank=3 scaffold_162 . exon 101860 102022 . - . ID=Physo144025.3;Parent=Physo144025;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_162 . CDS 102114 102155 . - 0 ID=Physo144025;Parent=Physo144025;rank=2 scaffold_162 . exon 102114 102155 . - . ID=Physo144025.2;Parent=Physo144025;constitutive=1;rank=2 scaffold_162 . CDS 102214 102363 . - 0 ID=Physo144025;Parent=Physo144025;rank=1 scaffold_162 . exon 102214 102363 . - . ID=Physo144025.1;Parent=Physo144025;constitutive=1;rank=1 scaffold_162 ensembl protein_coding_gene 106686 107879 . - . ID=Physo144026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1620023;logic_name=jgi_physo1_1 scaffold_162 ensembl transcript 106686 107879 . - . ID=Physo144026;Parent=Physo144026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_162 . CDS 106686 107879 . - 0 ID=Physo144026;Parent=Physo144026;rank=1 scaffold_162 . exon 106686 107879 . - . ID=Physo144026.1;Parent=Physo144026;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_160 1 109023 scaffold_160 . repeat_region 976 1054 . ? . description=dust scaffold_160 . repeat_region 1816 1823 . ? . description=dust scaffold_160 . biological_region 3896 3900 0.999 + . logic_name=eponine scaffold_160 . repeat_region 4711 4773 . ? . description=trf scaffold_160 . biological_region 5856 5864 0.999 + . logic_name=eponine scaffold_160 . biological_region 5879 5883 0.999 + . logic_name=eponine scaffold_160 . repeat_region 6503 6740 . - . description=GypsyPi-1c_I-int scaffold_160 . repeat_region 6915 6933 . ? . description=dust scaffold_160 . repeat_region 7087 9443 . - . description=GypsyPi-1c_I-int scaffold_160 . biological_region 9223 9224 0.999 - . logic_name=eponine scaffold_160 . biological_region 9761 9763 0.999 - . logic_name=eponine scaffold_160 . biological_region 9789 9790 0.999 - . logic_name=eponine scaffold_160 . biological_region 9851 9851 0.999 - . logic_name=eponine scaffold_160 ensembl tRNA_gene 430 501 . - . ID=EPrPSOG00000000007;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_160 ensembl transcript 430 501 . - . ID=EPrPSOT00000000007;Parent=EPrPSOG00000000007;biotype=tRNA;logic_name=ncrna_eg scaffold_160 ensembl tRNA_gene 1478 1549 . - . ID=EPrPSOG00000000050;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_160 ensembl transcript 1478 1549 . - . ID=EPrPSOT00000000050;Parent=EPrPSOG00000000050;biotype=tRNA;logic_name=ncrna_eg scaffold_160 . exon 430 501 . - . ID=EPrPSOE00000000007;Parent=EPrPSOT00000000007;constitutive=1;rank=1 scaffold_160 . exon 1478 1549 . - . ID=EPrPSOE00000000050;Parent=EPrPSOT00000000050;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 6755 9814 . - . ID=Physo143956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600001;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 6755 9814 . - . ID=Physo143956;Parent=Physo143956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 6755 7872 . - 0 ID=Physo143956;Parent=Physo143956;rank=4 scaffold_160 . exon 6755 7872 . - . ID=Physo143956.4;Parent=Physo143956;constitutive=1;ensembl_phase=1;rank=4 scaffold_160 . CDS 7894 8302 . - 0 ID=Physo143956;Parent=Physo143956;rank=3 scaffold_160 . exon 7894 8302 . - . ID=Physo143956.3;Parent=Physo143956;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_160 . CDS 8347 8389 . - 0 ID=Physo143956;Parent=Physo143956;rank=2 scaffold_160 . exon 8347 8389 . - . ID=Physo143956.2;Parent=Physo143956;constitutive=1;ensembl_phase=2;rank=2 scaffold_160 . CDS 8541 9814 . - 0 ID=Physo143956;Parent=Physo143956;rank=1 scaffold_160 . exon 8541 9814 . - . ID=Physo143956.1;Parent=Physo143956;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_160 ensembl protein_coding_gene 13138 16503 . + . ID=Physo143957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600002;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 13138 16503 . + . ID=Physo143957;Parent=Physo143957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 13138 13429 . + 0 ID=Physo143957;Parent=Physo143957;rank=1 scaffold_160 . exon 13138 13429 . + . ID=Physo143957.1;Parent=Physo143957;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_160 . CDS 13542 14637 . + 0 ID=Physo143957;Parent=Physo143957;rank=2 scaffold_160 . exon 13542 14637 . + . ID=Physo143957.2;Parent=Physo143957;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_160 . CDS 14823 15545 . + 0 ID=Physo143957;Parent=Physo143957;rank=3 scaffold_160 . exon 14823 15545 . + . ID=Physo143957.3;Parent=Physo143957;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_160 . CDS 15960 16503 . + 0 ID=Physo143957;Parent=Physo143957;rank=4 scaffold_160 . exon 15960 16503 . + . ID=Physo143957.4;Parent=Physo143957;constitutive=1;ensembl_phase=2;rank=4 scaffold_160 ensembl protein_coding_gene 17642 21176 . + . ID=Physo143958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600003;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 17642 21176 . + . ID=Physo143958;Parent=Physo143958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 17642 18678 . + 0 ID=Physo143958;Parent=Physo143958;rank=1 scaffold_160 . exon 17642 18678 . + . ID=Physo143958.1;Parent=Physo143958;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_160 . CDS 18727 19066 . + 0 ID=Physo143958;Parent=Physo143958;rank=2 scaffold_160 . exon 18727 19066 . + . ID=Physo143958.2;Parent=Physo143958;constitutive=1;ensembl_phase=2;rank=2 scaffold_160 . CDS 19231 20116 . + 0 ID=Physo143958;Parent=Physo143958;rank=3 scaffold_160 . exon 19231 20116 . + . ID=Physo143958.3;Parent=Physo143958;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_160 . CDS 20179 20314 . + 0 ID=Physo143958;Parent=Physo143958;rank=4 scaffold_160 . CDS 20477 21176 . + 0 ID=Physo143958;Parent=Physo143958;rank=5 scaffold_160 . biological_region 24947 24947 0.999 + . logic_name=eponine scaffold_160 . biological_region 26385 26389 0.999 - . logic_name=eponine scaffold_160 . repeat_region 26914 26921 . ? . description=dust scaffold_160 . biological_region 27417 27419 0.999 - . logic_name=eponine scaffold_160 . exon 20179 20314 . + . ID=Physo143958.4;Parent=Physo143958;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_160 . exon 20477 21176 . + . ID=Physo143958.5;Parent=Physo143958;constitutive=1;ensembl_phase=2;rank=5 scaffold_160 ensembl protein_coding_gene 22036 24970 . - . ID=Physo143959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600004;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 22036 24970 . - . ID=Physo143959;Parent=Physo143959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 22036 22538 . - 0 ID=Physo143959;Parent=Physo143959;rank=4 scaffold_160 . exon 22036 22538 . - . ID=Physo143959.4;Parent=Physo143959;constitutive=1;ensembl_phase=1;rank=4 scaffold_160 . CDS 22589 22923 . - 0 ID=Physo143959;Parent=Physo143959;rank=3 scaffold_160 . exon 22589 22923 . - . ID=Physo143959.3;Parent=Physo143959;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_160 . CDS 23045 23386 . - 0 ID=Physo143959;Parent=Physo143959;rank=2 scaffold_160 . exon 23045 23386 . - . ID=Physo143959.2;Parent=Physo143959;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_160 . CDS 23445 24970 . - 0 ID=Physo143959;Parent=Physo143959;rank=1 scaffold_160 . exon 23445 24970 . - . ID=Physo143959.1;Parent=Physo143959;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_160 ensembl protein_coding_gene 27367 28029 . - . ID=Physo143960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600005;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 27367 28029 . - . ID=Physo143960;Parent=Physo143960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 27367 27780 . - 0 ID=Physo143960;Parent=Physo143960;rank=2 scaffold_160 . exon 27367 27780 . - . ID=Physo143960.2;Parent=Physo143960;constitutive=1;rank=2 scaffold_160 . CDS 27949 28029 . - 0 ID=Physo143960;Parent=Physo143960;rank=1 scaffold_160 . exon 27949 28029 . - . ID=Physo143960.1;Parent=Physo143960;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 28783 33330 . + . ID=Physo143961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600006;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 28783 33330 . + . ID=Physo143961;Parent=Physo143961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 28783 32053 . + 0 ID=Physo143961;Parent=Physo143961;rank=1 scaffold_160 . exon 28783 32053 . + . ID=Physo143961.1;Parent=Physo143961;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_160 . CDS 32165 33330 . + 0 ID=Physo143961;Parent=Physo143961;rank=2 scaffold_160 . exon 32165 33330 . + . ID=Physo143961.2;Parent=Physo143961;constitutive=1;ensembl_phase=1;rank=2 scaffold_160 ensembl protein_coding_gene 35680 37080 . + . ID=Physo143963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600008;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 35680 37080 . + . ID=Physo143963;Parent=Physo143963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 35680 37080 . + 0 ID=Physo143963;Parent=Physo143963;rank=1 scaffold_160 . exon 35680 37080 . + . ID=Physo143963.1;Parent=Physo143963;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 37525 38313 . + . ID=Physo143964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600009;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 37525 38313 . + . ID=Physo143964;Parent=Physo143964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 37525 37976 . + 0 ID=Physo143964;Parent=Physo143964;rank=1 scaffold_160 . exon 37525 37976 . + . ID=Physo143964.1;Parent=Physo143964;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_160 . CDS 38061 38313 . + 0 ID=Physo143964;Parent=Physo143964;rank=2 scaffold_160 . exon 38061 38313 . + . ID=Physo143964.2;Parent=Physo143964;constitutive=1;ensembl_phase=2;rank=2 scaffold_160 ensembl protein_coding_gene 33736 35116 . - . ID=Physo158848;biotype=protein_coding;external_name=C_scaffold_160000002;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 33736 35116 . - . ID=Physo158848;Parent=Physo158848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 33736 34250 . - 0 ID=Physo158848;Parent=Physo158848;rank=3 scaffold_160 . exon 33736 34250 . - . ID=Physo158848.3;Parent=Physo158848;constitutive=1;ensembl_phase=1;rank=3 scaffold_160 . CDS 34305 34476 . - 0 ID=Physo158848;Parent=Physo158848;rank=2 scaffold_160 . exon 34305 34476 . - . ID=Physo158848.2;Parent=Physo158848;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_160 . CDS 34544 35116 . - 0 ID=Physo158848;Parent=Physo158848;rank=1 scaffold_160 . exon 34544 35116 . - . ID=Physo158848.1;Parent=Physo158848;constitutive=1;rank=1 scaffold_160 . repeat_region 39671 39694 . ? . description=dust scaffold_160 . repeat_region 39743 40418 . ? . description=trf scaffold_160 . repeat_region 39744 40295 . ? . description=trf scaffold_160 . repeat_region 39744 40418 . ? . description=trf scaffold_160 . repeat_region 40265 40508 . ? . description=trf scaffold_160 . repeat_region 40514 40647 . ? . description=trf scaffold_160 . biological_region 40748 40749 0.999 + . logic_name=eponine scaffold_160 . repeat_region 40903 40910 . ? . description=dust scaffold_160 . repeat_region 44615 44719 . - . description=Polinton-1_PI scaffold_160 . repeat_region 48955 48981 . ? . description=trf scaffold_160 ensembl protein_coding_gene 45622 46609 . - . ID=Physo143966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600011;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 45622 46609 . - . ID=Physo143966;Parent=Physo143966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . exon 45622 45831 . - . ID=Physo143966.5;Parent=Physo143966;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_160 . CDS 45712 45831 . - 0 ID=Physo143966;Parent=Physo143966;rank=5 scaffold_160 . CDS 45913 46021 . - 0 ID=Physo143966;Parent=Physo143966;rank=4 scaffold_160 . exon 45913 46021 . - . ID=Physo143966.4;Parent=Physo143966;constitutive=1;ensembl_phase=2;rank=4 scaffold_160 . CDS 46082 46198 . - 0 ID=Physo143966;Parent=Physo143966;rank=3 scaffold_160 . exon 46082 46198 . - . ID=Physo143966.3;Parent=Physo143966;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_160 . CDS 46264 46473 . - 0 ID=Physo143966;Parent=Physo143966;rank=2 scaffold_160 . exon 46264 46473 . - . ID=Physo143966.2;Parent=Physo143966;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_160 . CDS 46539 46609 . - 0 ID=Physo143966;Parent=Physo143966;rank=1 scaffold_160 . exon 46539 46609 . - . ID=Physo143966.1;Parent=Physo143966;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_160 ensembl protein_coding_gene 47380 48496 . - . ID=Physo143967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600012;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 47380 48496 . - . ID=Physo143967;Parent=Physo143967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . exon 47380 48496 . - . ID=Physo143967.1;Parent=Physo143967;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_160 . CDS 47582 48496 . - 0 ID=Physo143967;Parent=Physo143967;rank=1 scaffold_160 ensembl protein_coding_gene 40723 42495 . + . ID=Physo158849;biotype=protein_coding;external_name=C_scaffold_160000003;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 40723 42495 . + . ID=Physo158849;Parent=Physo158849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 40723 40846 . + 0 ID=Physo158849;Parent=Physo158849;rank=1 scaffold_160 . exon 40723 40846 . + . ID=Physo158849.1;Parent=Physo158849;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_160 . CDS 41075 42495 . + 0 ID=Physo158849;Parent=Physo158849;rank=2 scaffold_160 . exon 41075 42495 . + . ID=Physo158849.2;Parent=Physo158849;constitutive=1;ensembl_phase=1;rank=2 scaffold_160 ensembl protein_coding_gene 52615 53582 . - . ID=Physo143968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600013;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 52615 53582 . - . ID=Physo143968;Parent=Physo143968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 52615 52618 . - 0 ID=Physo143968;Parent=Physo143968;rank=2 scaffold_160 . exon 52615 52618 . - . ID=Physo143968.2;Parent=Physo143968;constitutive=1;ensembl_phase=2;rank=2 scaffold_160 . CDS 52894 53582 . - 0 ID=Physo143968;Parent=Physo143968;rank=1 scaffold_160 . exon 52894 53582 . - . ID=Physo143968.1;Parent=Physo143968;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_160 ensembl protein_coding_gene 54378 59759 . - . ID=Physo143969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600014;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 54378 59759 . - . ID=Physo143969;Parent=Physo143969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . exon 54378 59586 . - . ID=Physo143969.2;Parent=Physo143969;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_160 . CDS 54469 59586 . - 0 ID=Physo143969;Parent=Physo143969;rank=2 scaffold_160 . CDS 59718 59759 . - 0 ID=Physo143969;Parent=Physo143969;rank=1 scaffold_160 . biological_region 59921 59923 0.999 - . logic_name=eponine scaffold_160 . biological_region 63862 63864 0.999 + . logic_name=eponine scaffold_160 . biological_region 64562 64564 0.999 + . logic_name=eponine scaffold_160 . biological_region 64583 64584 0.999 + . logic_name=eponine scaffold_160 . biological_region 64643 64645 0.999 + . logic_name=eponine scaffold_160 . biological_region 65201 65204 0.999 - . logic_name=eponine scaffold_160 . biological_region 66698 66705 0.999 - . logic_name=eponine scaffold_160 . biological_region 66755 66759 0.999 + . logic_name=eponine scaffold_160 . biological_region 66773 66775 0.999 + . logic_name=eponine scaffold_160 . exon 59718 59759 . - . ID=Physo143969.1;Parent=Physo143969;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 66732 70033 . + . ID=Physo143971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600016;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 66732 70033 . + . ID=Physo143971;Parent=Physo143971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 66732 68006 . + 0 ID=Physo143971;Parent=Physo143971;rank=1 scaffold_160 . exon 66732 68006 . + . ID=Physo143971.1;Parent=Physo143971;constitutive=1;rank=1 scaffold_160 . CDS 68086 68792 . + 0 ID=Physo143971;Parent=Physo143971;rank=2 scaffold_160 . exon 68086 68792 . + . ID=Physo143971.2;Parent=Physo143971;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_160 . CDS 68865 68934 . + 0 ID=Physo143971;Parent=Physo143971;rank=3 scaffold_160 . exon 68865 68934 . + . ID=Physo143971.3;Parent=Physo143971;constitutive=1;ensembl_phase=2;rank=3 scaffold_160 . CDS 69113 70033 . + 0 ID=Physo143971;Parent=Physo143971;rank=4 scaffold_160 . exon 69113 70033 . + . ID=Physo143971.4;Parent=Physo143971;constitutive=1;rank=4 scaffold_160 ensembl protein_coding_gene 63715 66456 . - . ID=Physo158850;biotype=protein_coding;external_name=C_scaffold_160000004;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 63715 66456 . - . ID=Physo158850;Parent=Physo158850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 63715 63780 . - 0 ID=Physo158850;Parent=Physo158850;rank=12 scaffold_160 . exon 63715 63780 . - . ID=Physo158850.12;Parent=Physo158850;constitutive=1;rank=12 scaffold_160 . CDS 63875 64064 . - 0 ID=Physo158850;Parent=Physo158850;rank=11 scaffold_160 . exon 63875 64064 . - . ID=Physo158850.11;Parent=Physo158850;constitutive=1;ensembl_phase=2;rank=11 scaffold_160 . CDS 64187 64771 . - 0 ID=Physo158850;Parent=Physo158850;rank=10 scaffold_160 . exon 64187 64771 . - . ID=Physo158850.10;Parent=Physo158850;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_160 . CDS 64848 64880 . - 0 ID=Physo158850;Parent=Physo158850;rank=9 scaffold_160 . exon 64848 64880 . - . ID=Physo158850.9;Parent=Physo158850;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_160 . CDS 64948 65323 . - 0 ID=Physo158850;Parent=Physo158850;rank=8 scaffold_160 . exon 64948 65323 . - . ID=Physo158850.8;Parent=Physo158850;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_160 . CDS 65408 65478 . - 0 ID=Physo158850;Parent=Physo158850;rank=7 scaffold_160 . exon 65408 65478 . - . ID=Physo158850.7;Parent=Physo158850;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_160 . CDS 65546 65659 . - 0 ID=Physo158850;Parent=Physo158850;rank=6 scaffold_160 . exon 65546 65659 . - . ID=Physo158850.6;Parent=Physo158850;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_160 . CDS 65730 65818 . - 0 ID=Physo158850;Parent=Physo158850;rank=5 scaffold_160 . exon 65730 65818 . - . ID=Physo158850.5;Parent=Physo158850;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_160 . CDS 65892 65990 . - 0 ID=Physo158850;Parent=Physo158850;rank=4 scaffold_160 . exon 65892 65990 . - . ID=Physo158850.4;Parent=Physo158850;constitutive=1;rank=4 scaffold_160 . CDS 66065 66144 . - 0 ID=Physo158850;Parent=Physo158850;rank=3 scaffold_160 . exon 66065 66144 . - . ID=Physo158850.3;Parent=Physo158850;constitutive=1;ensembl_phase=1;rank=3 scaffold_160 . CDS 66237 66292 . - 0 ID=Physo158850;Parent=Physo158850;rank=2 scaffold_160 . exon 66237 66292 . - . ID=Physo158850.2;Parent=Physo158850;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_160 . CDS 66368 66456 . - 0 ID=Physo158850;Parent=Physo158850;rank=1 scaffold_160 . exon 66368 66456 . - . ID=Physo158850.1;Parent=Physo158850;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_160 . repeat_region 71190 71248 . ? . description=dust scaffold_160 . repeat_region 76574 76596 . ? . description=trf scaffold_160 ensembl protein_coding_gene 70145 70947 . - . ID=Physo143972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600017;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 70145 70947 . - . ID=Physo143972;Parent=Physo143972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 70145 70333 . - 0 ID=Physo143972;Parent=Physo143972;rank=2 scaffold_160 . exon 70145 70333 . - . ID=Physo143972.2;Parent=Physo143972;constitutive=1;rank=2 scaffold_160 . CDS 70408 70947 . - 0 ID=Physo143972;Parent=Physo143972;rank=1 scaffold_160 . exon 70408 70947 . - . ID=Physo143972.1;Parent=Physo143972;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 71182 72917 . + . ID=Physo143973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600018;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 71182 72917 . + . ID=Physo143973;Parent=Physo143973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 71182 71499 . + 0 ID=Physo143973;Parent=Physo143973;rank=1 scaffold_160 . exon 71182 71499 . + . ID=Physo143973.1;Parent=Physo143973;constitutive=1;rank=1 scaffold_160 . CDS 71562 71628 . + 0 ID=Physo143973;Parent=Physo143973;rank=2 scaffold_160 . exon 71562 71628 . + . ID=Physo143973.2;Parent=Physo143973;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_160 . CDS 71698 72917 . + 0 ID=Physo143973;Parent=Physo143973;rank=3 scaffold_160 . exon 71698 72917 . + . ID=Physo143973.3;Parent=Physo143973;constitutive=1;ensembl_phase=1;rank=3 scaffold_160 ensembl protein_coding_gene 73174 74205 . - . ID=Physo143974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600019;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 73174 74205 . - . ID=Physo143974;Parent=Physo143974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 73174 74205 . - 0 ID=Physo143974;Parent=Physo143974;rank=1 scaffold_160 . exon 73174 74205 . - . ID=Physo143974.1;Parent=Physo143974;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 74804 76067 . - . ID=Physo143975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600020;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 74804 76067 . - . ID=Physo143975;Parent=Physo143975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . exon 74804 75846 . - . ID=Physo143975.2;Parent=Physo143975;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_160 . CDS 75019 75846 . - 0 ID=Physo143975;Parent=Physo143975;rank=2 scaffold_160 . CDS 75945 76067 . - 0 ID=Physo143975;Parent=Physo143975;rank=1 scaffold_160 . exon 75945 76067 . - . ID=Physo143975.1;Parent=Physo143975;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 76596 83129 . - . ID=Physo143976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600021;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 76596 83129 . - . ID=Physo143976;Parent=Physo143976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 76596 81746 . - 0 ID=Physo143976;Parent=Physo143976;rank=5 scaffold_160 . exon 76596 81746 . - . ID=Physo143976.5;Parent=Physo143976;constitutive=1;rank=5 scaffold_160 . CDS 82013 82063 . - 0 ID=Physo143976;Parent=Physo143976;rank=4 scaffold_160 . CDS 82149 82421 . - 0 ID=Physo143976;Parent=Physo143976;rank=3 scaffold_160 . CDS 82498 82650 . - 0 ID=Physo143976;Parent=Physo143976;rank=2 scaffold_160 . CDS 82753 83091 . - 0 ID=Physo143976;Parent=Physo143976;rank=1 scaffold_160 ensembl protein_coding_gene 74665 74753 . + . ID=Physo158852;biotype=protein_coding;external_name=C_scaffold_160000006;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 74665 74753 . + . ID=Physo158852;Parent=Physo158852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . exon 74665 74753 . + . ID=Physo158852.1;Parent=Physo158852;constitutive=1;ensembl_phase=-1;rank=1 scaffold_160 . CDS 74667 74753 . + 0 ID=Physo158852;Parent=Physo158852;rank=1 scaffold_160 . biological_region 82965 82971 0.999 + . logic_name=eponine scaffold_160 . biological_region 83028 83038 0.999 - . logic_name=eponine scaffold_160 . biological_region 83070 83075 0.999 - . logic_name=eponine scaffold_160 . biological_region 83737 83742 0.999 - . logic_name=eponine scaffold_160 . biological_region 88207 88211 0.999 + . logic_name=eponine scaffold_160 . exon 82013 82063 . - . ID=Physo143976.4;Parent=Physo143976;constitutive=1;rank=4 scaffold_160 . exon 82149 82421 . - . ID=Physo143976.3;Parent=Physo143976;constitutive=1;rank=3 scaffold_160 . exon 82498 82650 . - . ID=Physo143976.2;Parent=Physo143976;constitutive=1;rank=2 scaffold_160 . exon 82753 83129 . - . ID=Physo143976.1;Parent=Physo143976;constitutive=1;ensembl_phase=-1;rank=1 scaffold_160 ensembl protein_coding_gene 83388 85787 . - . ID=Physo143977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600022;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 83388 85787 . - . ID=Physo143977;Parent=Physo143977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 83388 85787 . - 0 ID=Physo143977;Parent=Physo143977;rank=1 scaffold_160 . exon 83388 85787 . - . ID=Physo143977.1;Parent=Physo143977;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 86150 88051 . - . ID=Physo143978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600023;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 86150 88051 . - . ID=Physo143978;Parent=Physo143978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 86150 86292 . - 0 ID=Physo143978;Parent=Physo143978;rank=4 scaffold_160 . exon 86150 86292 . - . ID=Physo143978.4;Parent=Physo143978;constitutive=1;ensembl_phase=1;rank=4 scaffold_160 . CDS 86351 86462 . - 0 ID=Physo143978;Parent=Physo143978;rank=3 scaffold_160 . exon 86351 86462 . - . ID=Physo143978.3;Parent=Physo143978;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_160 . CDS 86537 86661 . - 0 ID=Physo143978;Parent=Physo143978;rank=2 scaffold_160 . exon 86537 86661 . - . ID=Physo143978.2;Parent=Physo143978;constitutive=1;ensembl_phase=1;rank=2 scaffold_160 . CDS 86737 88051 . - 0 ID=Physo143978;Parent=Physo143978;rank=1 scaffold_160 . exon 86737 88051 . - . ID=Physo143978.1;Parent=Physo143978;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_160 ensembl protein_coding_gene 88438 89358 . - . ID=Physo143979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600024;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 88438 89358 . - . ID=Physo143979;Parent=Physo143979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 88438 89358 . - 0 ID=Physo143979;Parent=Physo143979;rank=1 scaffold_160 . exon 88438 89358 . - . ID=Physo143979.1;Parent=Physo143979;constitutive=1;rank=1 scaffold_160 . repeat_region 95319 95343 . ? . description=dust scaffold_160 . repeat_region 96557 96564 . ? . description=dust scaffold_160 . repeat_region 97568 97588 . ? . description=dust scaffold_160 . repeat_region 97568 97588 . ? . description=trf scaffold_160 ensembl protein_coding_gene 89795 91825 . - . ID=Physo143980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600025;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 89795 91825 . - . ID=Physo143980;Parent=Physo143980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . CDS 89795 91825 . - 0 ID=Physo143980;Parent=Physo143980;rank=1 scaffold_160 . exon 89795 91825 . - . ID=Physo143980.1;Parent=Physo143980;constitutive=1;rank=1 scaffold_160 ensembl protein_coding_gene 93271 94254 . + . ID=Physo143981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600026;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 93271 94254 . + . ID=Physo143981;Parent=Physo143981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . exon 93271 93465 . + . ID=Physo143981.1;Parent=Physo143981;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_160 . CDS 93276 93465 . + 0 ID=Physo143981;Parent=Physo143981;rank=1 scaffold_160 . CDS 93550 93983 . + 0 ID=Physo143981;Parent=Physo143981;rank=2 scaffold_160 . exon 93550 93983 . + . ID=Physo143981.2;Parent=Physo143981;constitutive=1;ensembl_phase=1;rank=2 scaffold_160 . CDS 94069 94254 . + 0 ID=Physo143981;Parent=Physo143981;rank=3 scaffold_160 . exon 94069 94254 . + . ID=Physo143981.3;Parent=Physo143981;constitutive=1;rank=3 scaffold_160 . biological_region 99137 99139 0.999 + . logic_name=eponine scaffold_160 . biological_region 99180 99180 0.999 - . logic_name=eponine scaffold_160 . biological_region 99256 99256 0.999 - . logic_name=eponine scaffold_160 . biological_region 101899 101904 0.999 - . logic_name=eponine scaffold_160 . biological_region 101912 101918 0.999 - . logic_name=eponine scaffold_160 . biological_region 102307 102309 0.999 - . logic_name=eponine scaffold_160 . biological_region 102649 102652 0.999 - . logic_name=eponine scaffold_160 . biological_region 102681 102684 0.999 - . logic_name=eponine scaffold_160 . biological_region 102713 102714 0.999 - . logic_name=eponine scaffold_160 . biological_region 106487 106487 0.999 - . logic_name=eponine scaffold_160 . biological_region 106509 106512 0.999 - . logic_name=eponine scaffold_160 . biological_region 106568 106570 0.999 - . logic_name=eponine scaffold_160 . biological_region 106569 106569 0.999 + . logic_name=eponine scaffold_160 . biological_region 107681 107684 0.999 + . logic_name=eponine scaffold_160 . biological_region 108305 108309 0.999 + . logic_name=eponine scaffold_160 . biological_region 108389 108395 0.999 + . logic_name=eponine scaffold_160 . biological_region 108420 108424 0.999 - . logic_name=eponine scaffold_160 . biological_region 108445 108447 0.999 + . logic_name=eponine scaffold_160 . biological_region 108571 108572 0.999 - . logic_name=eponine scaffold_160 . biological_region 108746 108750 0.999 - . logic_name=eponine scaffold_160 . biological_region 108929 108931 0.999 + . logic_name=eponine scaffold_160 . biological_region 108940 108943 0.999 + . logic_name=eponine scaffold_160 ensembl protein_coding_gene 101422 108858 . - . ID=Physo143982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1600027;logic_name=jgi_physo1_1 scaffold_160 ensembl transcript 101422 108858 . - . ID=Physo143982;Parent=Physo143982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_160 . exon 101422 102885 . - . ID=Physo143982.5;Parent=Physo143982;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_160 . CDS 101620 102885 . - 0 ID=Physo143982;Parent=Physo143982;rank=5 scaffold_160 . CDS 102977 106886 . - 0 ID=Physo143982;Parent=Physo143982;rank=4 scaffold_160 . exon 102977 106886 . - . ID=Physo143982.4;Parent=Physo143982;constitutive=1;ensembl_phase=2;rank=4 scaffold_160 . CDS 106917 107529 . - 0 ID=Physo143982;Parent=Physo143982;rank=3 scaffold_160 . exon 106917 107529 . - . ID=Physo143982.3;Parent=Physo143982;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_160 . CDS 107551 107791 . - 0 ID=Physo143982;Parent=Physo143982;rank=2 scaffold_160 . exon 107551 107791 . - . ID=Physo143982.2;Parent=Physo143982;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_160 . CDS 107833 108555 . - 0 ID=Physo143982;Parent=Physo143982;rank=1 scaffold_160 . exon 107833 108858 . - . ID=Physo143982.1;Parent=Physo143982;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_158 1 109328 scaffold_158 . repeat_region 194 313 . ? . description=trf scaffold_158 . repeat_region 1253 15991 . ? . description=dust scaffold_158 ensembl protein_coding_gene 686 943 . - . ID=Physo124404;biotype=protein_coding;external_name=estExt_Genewise1.C_1580001;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 686 943 . - . ID=Physo124404;Parent=Physo124404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 686 922 . - 0 ID=Physo124404;Parent=Physo124404;rank=1 scaffold_158 . exon 686 943 . - . ID=Physo124404.1;Parent=Physo124404;constitutive=1;ensembl_phase=-1;rank=1 scaffold_158 . biological_region 17721 17723 0.999 - . logic_name=eponine scaffold_158 ensembl protein_coding_gene 16378 17725 . + . ID=Physo143912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580002;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 16378 17725 . + . ID=Physo143912;Parent=Physo143912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 16378 16625 . + 0 ID=Physo143912;Parent=Physo143912;rank=1 scaffold_158 . exon 16378 16625 . + . ID=Physo143912.1;Parent=Physo143912;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_158 . CDS 16650 17668 . + 0 ID=Physo143912;Parent=Physo143912;rank=2 scaffold_158 . exon 16650 17668 . + . ID=Physo143912.2;Parent=Physo143912;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_158 . CDS 17694 17725 . + 0 ID=Physo143912;Parent=Physo143912;rank=3 scaffold_158 . exon 17694 17725 . + . ID=Physo143912.3;Parent=Physo143912;constitutive=1;ensembl_phase=1;rank=3 scaffold_158 . repeat_region 17816 21871 . ? . description=dust scaffold_158 . repeat_region 24823 27333 . ? . description=dust scaffold_158 . repeat_region 27334 28726 . ? . description=dust scaffold_158 ensembl protein_coding_gene 22071 22680 . + . ID=Physo143913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580003;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 22071 22680 . + . ID=Physo143913;Parent=Physo143913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 22071 22076 . + 0 ID=Physo143913;Parent=Physo143913;rank=1 scaffold_158 . exon 22071 22076 . + . ID=Physo143913.1;Parent=Physo143913;constitutive=1;rank=1 scaffold_158 . CDS 22210 22680 . + 0 ID=Physo143913;Parent=Physo143913;rank=2 scaffold_158 . exon 22210 22680 . + . ID=Physo143913.2;Parent=Physo143913;constitutive=1;rank=2 scaffold_158 ensembl protein_coding_gene 29256 33924 . - . ID=Physo143914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580004;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 29256 33924 . - . ID=Physo143914;Parent=Physo143914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 29256 29275 . - 0 ID=Physo143914;Parent=Physo143914;rank=8 scaffold_158 . exon 29256 29275 . - . ID=Physo143914.8;Parent=Physo143914;constitutive=1;ensembl_phase=1;rank=8 scaffold_158 . CDS 29313 29586 . - 0 ID=Physo143914;Parent=Physo143914;rank=7 scaffold_158 . exon 29313 29586 . - . ID=Physo143914.7;Parent=Physo143914;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_158 . CDS 29759 30650 . - 0 ID=Physo143914;Parent=Physo143914;rank=6 scaffold_158 . exon 29759 30650 . - . ID=Physo143914.6;Parent=Physo143914;constitutive=1;ensembl_phase=2;rank=6 scaffold_158 . CDS 30695 31001 . - 0 ID=Physo143914;Parent=Physo143914;rank=5 scaffold_158 . CDS 31490 32247 . - 0 ID=Physo143914;Parent=Physo143914;rank=4 scaffold_158 . CDS 32312 33129 . - 0 ID=Physo143914;Parent=Physo143914;rank=3 scaffold_158 . CDS 33166 33331 . - 0 ID=Physo143914;Parent=Physo143914;rank=2 scaffold_158 . CDS 33758 33924 . - 0 ID=Physo143914;Parent=Physo143914;rank=1 scaffold_158 . repeat_region 34658 34714 . ? . description=trf scaffold_158 . repeat_region 34671 34723 . ? . description=trf scaffold_158 . exon 30695 31001 . - . ID=Physo143914.5;Parent=Physo143914;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_158 . exon 31490 32247 . - . ID=Physo143914.4;Parent=Physo143914;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_158 . exon 32312 33129 . - . ID=Physo143914.3;Parent=Physo143914;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_158 . exon 33166 33331 . - . ID=Physo143914.2;Parent=Physo143914;constitutive=1;ensembl_phase=2;rank=2 scaffold_158 . exon 33758 33924 . - . ID=Physo143914.1;Parent=Physo143914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_158 ensembl protein_coding_gene 35074 38271 . + . ID=Physo143915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580005;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 35074 38271 . + . ID=Physo143915;Parent=Physo143915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 35074 36411 . + 0 ID=Physo143915;Parent=Physo143915;rank=1 scaffold_158 . exon 35074 36411 . + . ID=Physo143915.1;Parent=Physo143915;constitutive=1;rank=1 scaffold_158 . CDS 37687 38271 . + 0 ID=Physo143915;Parent=Physo143915;rank=2 scaffold_158 . exon 37687 38271 . + . ID=Physo143915.2;Parent=Physo143915;constitutive=1;rank=2 scaffold_158 ensembl protein_coding_gene 38450 43765 . - . ID=Physo143916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580006;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 38450 43765 . - . ID=Physo143916;Parent=Physo143916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 38450 38477 . - 0 ID=Physo143916;Parent=Physo143916;rank=10 scaffold_158 . exon 38450 38477 . - . ID=Physo143916.10;Parent=Physo143916;constitutive=1;ensembl_phase=2;rank=10 scaffold_158 . CDS 38618 39116 . - 0 ID=Physo143916;Parent=Physo143916;rank=9 scaffold_158 . exon 38618 39116 . - . ID=Physo143916.9;Parent=Physo143916;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_158 . CDS 39176 39276 . - 0 ID=Physo143916;Parent=Physo143916;rank=8 scaffold_158 . exon 39176 39276 . - . ID=Physo143916.8;Parent=Physo143916;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_158 . CDS 39374 39401 . - 0 ID=Physo143916;Parent=Physo143916;rank=7 scaffold_158 . exon 39374 39401 . - . ID=Physo143916.7;Parent=Physo143916;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_158 . CDS 39443 39539 . - 0 ID=Physo143916;Parent=Physo143916;rank=6 scaffold_158 . exon 39443 39539 . - . ID=Physo143916.6;Parent=Physo143916;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_158 . CDS 39645 39953 . - 0 ID=Physo143916;Parent=Physo143916;rank=5 scaffold_158 . exon 39645 39953 . - . ID=Physo143916.5;Parent=Physo143916;constitutive=1;rank=5 scaffold_158 . CDS 40016 41058 . - 0 ID=Physo143916;Parent=Physo143916;rank=4 scaffold_158 . CDS 41148 42143 . - 0 ID=Physo143916;Parent=Physo143916;rank=3 scaffold_158 . CDS 42167 43670 . - 0 ID=Physo143916;Parent=Physo143916;rank=2 scaffold_158 . CDS 43721 43765 . - 0 ID=Physo143916;Parent=Physo143916;rank=1 scaffold_158 . biological_region 39982 39984 0.999 + . logic_name=eponine scaffold_158 . biological_region 40036 40040 0.999 + . logic_name=eponine scaffold_158 . biological_region 40066 40069 0.999 - . logic_name=eponine scaffold_158 . biological_region 41427 41431 0.999 + . logic_name=eponine scaffold_158 . biological_region 41684 41687 0.999 + . logic_name=eponine scaffold_158 . biological_region 41788 41793 0.999 + . logic_name=eponine scaffold_158 . biological_region 42187 42190 0.999 - . logic_name=eponine scaffold_158 . biological_region 42242 42247 0.999 + . logic_name=eponine scaffold_158 . biological_region 42285 42287 0.999 + . logic_name=eponine scaffold_158 . biological_region 42325 42327 0.999 + . logic_name=eponine scaffold_158 . biological_region 42367 42368 0.999 - . logic_name=eponine scaffold_158 . repeat_region 47101 47114 . ? . description=dust scaffold_158 . biological_region 48126 48127 0.999 - . logic_name=eponine scaffold_158 . biological_region 48164 48169 0.999 - . logic_name=eponine scaffold_158 . exon 40016 41058 . - . ID=Physo143916.4;Parent=Physo143916;constitutive=1;ensembl_phase=1;rank=4 scaffold_158 . exon 41148 42143 . - . ID=Physo143916.3;Parent=Physo143916;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_158 . exon 42167 43670 . - . ID=Physo143916.2;Parent=Physo143916;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_158 . exon 43721 43765 . - . ID=Physo143916.1;Parent=Physo143916;constitutive=1;rank=1 scaffold_158 ensembl protein_coding_gene 48028 50562 . + . ID=Physo143917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580007;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 48028 50562 . + . ID=Physo143917;Parent=Physo143917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 48028 48252 . + 0 ID=Physo143917;Parent=Physo143917;rank=1 scaffold_158 . exon 48028 48252 . + . ID=Physo143917.1;Parent=Physo143917;constitutive=1;rank=1 scaffold_158 . CDS 48428 48947 . + 0 ID=Physo143917;Parent=Physo143917;rank=2 scaffold_158 . exon 48428 48947 . + . ID=Physo143917.2;Parent=Physo143917;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_158 . CDS 49009 49197 . + 0 ID=Physo143917;Parent=Physo143917;rank=3 scaffold_158 . exon 49009 49197 . + . ID=Physo143917.3;Parent=Physo143917;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_158 . CDS 49266 49697 . + 0 ID=Physo143917;Parent=Physo143917;rank=4 scaffold_158 . exon 49266 49697 . + . ID=Physo143917.4;Parent=Physo143917;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_158 . CDS 49892 50562 . + 0 ID=Physo143917;Parent=Physo143917;rank=5 scaffold_158 . repeat_region 58667 58709 . ? . description=trf scaffold_158 . exon 49892 50562 . + . ID=Physo143917.5;Parent=Physo143917;constitutive=1;ensembl_phase=1;rank=5 scaffold_158 ensembl protein_coding_gene 52716 58129 . - . ID=Physo143918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580008;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 52716 58129 . - . ID=Physo143918;Parent=Physo143918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 52716 53625 . - 0 ID=Physo143918;Parent=Physo143918;rank=9 scaffold_158 . exon 52716 53625 . - . ID=Physo143918.9;Parent=Physo143918;constitutive=1;ensembl_phase=2;rank=9 scaffold_158 . CDS 53724 53902 . - 0 ID=Physo143918;Parent=Physo143918;rank=8 scaffold_158 . exon 53724 53902 . - . ID=Physo143918.8;Parent=Physo143918;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_158 . CDS 54140 54379 . - 0 ID=Physo143918;Parent=Physo143918;rank=7 scaffold_158 . exon 54140 54379 . - . ID=Physo143918.7;Parent=Physo143918;constitutive=1;rank=7 scaffold_158 . CDS 54434 54553 . - 0 ID=Physo143918;Parent=Physo143918;rank=6 scaffold_158 . exon 54434 54553 . - . ID=Physo143918.6;Parent=Physo143918;constitutive=1;rank=6 scaffold_158 . CDS 54732 55308 . - 0 ID=Physo143918;Parent=Physo143918;rank=5 scaffold_158 . exon 54732 55308 . - . ID=Physo143918.5;Parent=Physo143918;constitutive=1;ensembl_phase=2;rank=5 scaffold_158 . CDS 55336 55961 . - 0 ID=Physo143918;Parent=Physo143918;rank=4 scaffold_158 . exon 55336 55961 . - . ID=Physo143918.4;Parent=Physo143918;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_158 . CDS 56117 57436 . - 0 ID=Physo143918;Parent=Physo143918;rank=3 scaffold_158 . exon 56117 57436 . - . ID=Physo143918.3;Parent=Physo143918;constitutive=1;rank=3 scaffold_158 . CDS 57470 57888 . - 0 ID=Physo143918;Parent=Physo143918;rank=2 scaffold_158 . exon 57470 57888 . - . ID=Physo143918.2;Parent=Physo143918;constitutive=1;ensembl_phase=1;rank=2 scaffold_158 . CDS 57964 58129 . - 0 ID=Physo143918;Parent=Physo143918;rank=1 scaffold_158 . exon 57964 58129 . - . ID=Physo143918.1;Parent=Physo143918;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_158 . repeat_region 60730 60739 . ? . description=dust scaffold_158 . biological_region 61648 61648 0.999 + . logic_name=eponine scaffold_158 . biological_region 61667 61672 0.999 + . logic_name=eponine scaffold_158 . biological_region 61720 61723 0.999 + . logic_name=eponine scaffold_158 . biological_region 61738 61742 0.999 - . logic_name=eponine scaffold_158 . biological_region 62958 62965 0.999 - . logic_name=eponine scaffold_158 . biological_region 65400 65403 0.999 - . logic_name=eponine scaffold_158 . biological_region 66381 66381 0.999 + . logic_name=eponine scaffold_158 . biological_region 66709 66716 0.999 + . logic_name=eponine scaffold_158 . biological_region 67592 67595 0.999 + . logic_name=eponine scaffold_158 . biological_region 67692 67697 0.999 - . logic_name=eponine scaffold_158 . biological_region 68203 68207 0.999 + . logic_name=eponine scaffold_158 . biological_region 68392 68397 0.999 - . logic_name=eponine scaffold_158 . biological_region 69534 69537 0.999 + . logic_name=eponine scaffold_158 . biological_region 69541 69543 0.999 - . logic_name=eponine scaffold_158 ensembl protein_coding_gene 61660 63948 . + . ID=Physo143919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580009;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 61660 63948 . + . ID=Physo143919;Parent=Physo143919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 61660 63025 . + 0 ID=Physo143919;Parent=Physo143919;rank=1 scaffold_158 . exon 61660 63025 . + . ID=Physo143919.1;Parent=Physo143919;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_158 . CDS 63080 63198 . + 0 ID=Physo143919;Parent=Physo143919;rank=2 scaffold_158 . exon 63080 63198 . + . ID=Physo143919.2;Parent=Physo143919;constitutive=1;ensembl_phase=1;rank=2 scaffold_158 . CDS 63328 63948 . + 0 ID=Physo143919;Parent=Physo143919;rank=3 scaffold_158 . exon 63328 63948 . + . ID=Physo143919.3;Parent=Physo143919;constitutive=1;rank=3 scaffold_158 ensembl protein_coding_gene 66004 71525 . - . ID=Physo143920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580010;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 66004 71525 . - . ID=Physo143920;Parent=Physo143920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 66004 66543 . - 0 ID=Physo143920;Parent=Physo143920;rank=8 scaffold_158 . exon 66004 66543 . - . ID=Physo143920.8;Parent=Physo143920;constitutive=1;rank=8 scaffold_158 . CDS 66569 66699 . - 0 ID=Physo143920;Parent=Physo143920;rank=7 scaffold_158 . exon 66569 66699 . - . ID=Physo143920.7;Parent=Physo143920;constitutive=1;ensembl_phase=1;rank=7 scaffold_158 . CDS 66746 67217 . - 0 ID=Physo143920;Parent=Physo143920;rank=6 scaffold_158 . exon 66746 67217 . - . ID=Physo143920.6;Parent=Physo143920;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_158 . CDS 67264 68658 . - 0 ID=Physo143920;Parent=Physo143920;rank=5 scaffold_158 . exon 67264 68658 . - . ID=Physo143920.5;Parent=Physo143920;constitutive=1;rank=5 scaffold_158 . CDS 68852 68892 . - 0 ID=Physo143920;Parent=Physo143920;rank=4 scaffold_158 . exon 68852 68892 . - . ID=Physo143920.4;Parent=Physo143920;constitutive=1;ensembl_phase=1;rank=4 scaffold_158 . CDS 69367 69995 . - 0 ID=Physo143920;Parent=Physo143920;rank=3 scaffold_158 . exon 69367 69995 . - . ID=Physo143920.3;Parent=Physo143920;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_158 . CDS 70092 70531 . - 0 ID=Physo143920;Parent=Physo143920;rank=2 scaffold_158 . CDS 70581 71525 . - 0 ID=Physo143920;Parent=Physo143920;rank=1 scaffold_158 . repeat_region 72342 72385 . ? . description=trf scaffold_158 . repeat_region 72359 72403 . ? . description=trf scaffold_158 ensembl protein_coding_gene 72546 72788 . - . ID=Physo124411;biotype=protein_coding;external_name=estExt_Genewise1.C_1580008;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 72546 72788 . - . ID=Physo124411;Parent=Physo124411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 72546 72785 . - 0 ID=Physo124411;Parent=Physo124411;rank=1 scaffold_158 . exon 72546 72788 . - . ID=Physo124411.1;Parent=Physo124411;constitutive=1;ensembl_phase=-1;rank=1 scaffold_158 ensembl protein_coding_gene 76745 81151 . - . ID=Physo124416;biotype=protein_coding;external_name=estExt_Genewise1.C_1580013;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 76745 81151 . - . ID=Physo124416;Parent=Physo124416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 76745 77032 . - 0 ID=Physo124416;Parent=Physo124416;rank=2 scaffold_158 . exon 76745 77032 . - . ID=Physo124416.2;Parent=Physo124416;constitutive=1;rank=2 scaffold_158 . CDS 80507 80929 . - 0 ID=Physo124416;Parent=Physo124416;rank=1 scaffold_158 . exon 70092 70531 . - . ID=Physo143920.2;Parent=Physo143920;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_158 . exon 70581 71525 . - . ID=Physo143920.1;Parent=Physo143920;constitutive=1;rank=1 scaffold_158 ensembl protein_coding_gene 73350 76393 . + . ID=Physo143921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580011;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 73350 76393 . + . ID=Physo143921;Parent=Physo143921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 73350 73796 . + 0 ID=Physo143921;Parent=Physo143921;rank=1 scaffold_158 . exon 73350 73796 . + . ID=Physo143921.1;Parent=Physo143921;constitutive=1;rank=1 scaffold_158 . CDS 73820 76393 . + 0 ID=Physo143921;Parent=Physo143921;rank=2 scaffold_158 . exon 73820 76393 . + . ID=Physo143921.2;Parent=Physo143921;constitutive=1;rank=2 scaffold_158 . repeat_region 77112 80079 . ? . description=dust scaffold_158 . repeat_region 81156 81999 . ? . description=dust scaffold_158 . repeat_region 82000 101351 . ? . description=dust scaffold_158 . exon 80507 81151 . - . ID=Physo124416.1;Parent=Physo124416;constitutive=1;ensembl_phase=-1;rank=1 scaffold_158 . repeat_region 82000 101351 . ? . description=dust scaffold_158 . repeat_region 101713 101748 . ? . description=trf scaffold_158 . repeat_region 101753 101783 . ? . description=trf scaffold_158 . repeat_region 101823 101875 . ? . description=trf scaffold_158 . repeat_region 101823 101875 . ? . description=trf scaffold_158 . biological_region 102480 102480 0.999 + . logic_name=eponine scaffold_158 . repeat_region 103212 103813 . ? . description=dust scaffold_158 . repeat_region 105339 108356 . ? . description=dust scaffold_158 . biological_region 108756 108758 0.999 + . logic_name=eponine scaffold_158 . repeat_region 108966 109001 . ? . description=trf scaffold_158 . repeat_region 109006 109036 . ? . description=trf scaffold_158 ensembl protein_coding_gene 108357 108872 . + . ID=Physo109598;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1580001;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 108357 108872 . + . ID=Physo109598;Parent=Physo109598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . exon 108357 108872 . + . ID=Physo109598.1;Parent=Physo109598;constitutive=1;ensembl_phase=-1;rank=1 scaffold_158 . CDS 108456 108872 . + 0 ID=Physo109598;Parent=Physo109598;rank=1 scaffold_158 ensembl protein_coding_gene 101989 102701 . + . ID=Physo143923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580013;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 101989 102701 . + . ID=Physo143923;Parent=Physo143923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 101989 102402 . + 0 ID=Physo143923;Parent=Physo143923;rank=1 scaffold_158 . exon 101989 102402 . + . ID=Physo143923.1;Parent=Physo143923;constitutive=1;rank=1 scaffold_158 . CDS 102435 102701 . + 0 ID=Physo143923;Parent=Physo143923;rank=2 scaffold_158 . exon 102435 102701 . + . ID=Physo143923.2;Parent=Physo143923;constitutive=1;rank=2 scaffold_158 ensembl protein_coding_gene 103815 105172 . + . ID=Physo143924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1580014;logic_name=jgi_physo1_1 scaffold_158 ensembl transcript 103815 105172 . + . ID=Physo143924;Parent=Physo143924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_158 . CDS 103815 105059 . + 0 ID=Physo143924;Parent=Physo143924;rank=1 scaffold_158 . exon 103815 105059 . + . ID=Physo143924.1;Parent=Physo143924;constitutive=1;rank=1 scaffold_158 . CDS 105131 105172 . + 0 ID=Physo143924;Parent=Physo143924;rank=2 scaffold_158 . exon 105131 105172 . + . ID=Physo143924.2;Parent=Physo143924;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_154 1 112334 scaffold_154 . biological_region 3974 3975 0.999 + . logic_name=eponine scaffold_154 . biological_region 5462 5463 0.999 - . logic_name=eponine scaffold_154 . biological_region 5736 5740 0.999 - . logic_name=eponine scaffold_154 ensembl protein_coding_gene 6639 6839 . - . ID=Physo124281;biotype=protein_coding;external_name=estExt_Genewise1.C_1540005;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 6639 6839 . - . ID=Physo124281;Parent=Physo124281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . exon 6639 6839 . - . ID=Physo124281.1;Parent=Physo124281;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_154 . CDS 6641 6838 . - 0 ID=Physo124281;Parent=Physo124281;rank=1 scaffold_154 ensembl protein_coding_gene 739 1906 . + . ID=Physo143837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540001;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 739 1906 . + . ID=Physo143837;Parent=Physo143837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 739 1076 . + 0 ID=Physo143837;Parent=Physo143837;rank=1 scaffold_154 . exon 739 1076 . + . ID=Physo143837.1;Parent=Physo143837;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_154 . CDS 1145 1292 . + 0 ID=Physo143837;Parent=Physo143837;rank=2 scaffold_154 . exon 1145 1292 . + . ID=Physo143837.2;Parent=Physo143837;constitutive=1;ensembl_phase=2;rank=2 scaffold_154 . CDS 1363 1420 . + 0 ID=Physo143837;Parent=Physo143837;rank=3 scaffold_154 . exon 1363 1420 . + . ID=Physo143837.3;Parent=Physo143837;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_154 . CDS 1470 1906 . + 0 ID=Physo143837;Parent=Physo143837;rank=4 scaffold_154 . exon 1470 1906 . + . ID=Physo143837.4;Parent=Physo143837;constitutive=1;ensembl_phase=1;rank=4 scaffold_154 ensembl protein_coding_gene 1950 4090 . - . ID=Physo143838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540002;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 1950 4090 . - . ID=Physo143838;Parent=Physo143838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 1950 3276 . - 0 ID=Physo143838;Parent=Physo143838;rank=3 scaffold_154 . exon 1950 3276 . - . ID=Physo143838.3;Parent=Physo143838;constitutive=1;ensembl_phase=2;rank=3 scaffold_154 . CDS 3353 3529 . - 0 ID=Physo143838;Parent=Physo143838;rank=2 scaffold_154 . exon 3353 3529 . - . ID=Physo143838.2;Parent=Physo143838;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_154 . CDS 3567 4090 . - 0 ID=Physo143838;Parent=Physo143838;rank=1 scaffold_154 . exon 3567 4090 . - . ID=Physo143838.1;Parent=Physo143838;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_154 ensembl protein_coding_gene 5405 6460 . + . ID=Physo143839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540003;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 5405 6460 . + . ID=Physo143839;Parent=Physo143839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 5405 6460 . + 0 ID=Physo143839;Parent=Physo143839;rank=1 scaffold_154 . exon 5405 6460 . + . ID=Physo143839.1;Parent=Physo143839;constitutive=1;rank=1 scaffold_154 . repeat_region 10750 10769 . ? . description=trf scaffold_154 . repeat_region 11816 11825 . ? . description=dust scaffold_154 . repeat_region 13005 13045 . ? . description=trf scaffold_154 ensembl protein_coding_gene 11342 11801 . - . ID=Physo109593;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84LA8];external_name=estExt_fgenesh1_pm.C_1540001;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 11342 11801 . - . ID=Physo109593;Parent=Physo109593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . exon 11342 11801 . - . ID=Physo109593.1;Parent=Physo109593;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_154 . CDS 11587 11793 . - 0 ID=Physo109593;Parent=Physo109593;rank=1 scaffold_154 ensembl protein_coding_gene 12098 13092 . + . ID=Physo143842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540006;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 12098 13092 . + . ID=Physo143842;Parent=Physo143842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 12098 13072 . + 0 ID=Physo143842;Parent=Physo143842;rank=1 scaffold_154 . exon 12098 13092 . + . ID=Physo143842.1;Parent=Physo143842;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_154 ensembl protein_coding_gene 16059 17297 . + . ID=Physo143843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540007;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 16059 17297 . + . ID=Physo143843;Parent=Physo143843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 16059 16514 . + 0 ID=Physo143843;Parent=Physo143843;rank=1 scaffold_154 . exon 16059 16514 . + . ID=Physo143843.1;Parent=Physo143843;constitutive=1;rank=1 scaffold_154 . CDS 16537 16680 . + 0 ID=Physo143843;Parent=Physo143843;rank=2 scaffold_154 . exon 16537 16680 . + . ID=Physo143843.2;Parent=Physo143843;constitutive=1;rank=2 scaffold_154 . CDS 16791 17297 . + 0 ID=Physo143843;Parent=Physo143843;rank=3 scaffold_154 . exon 16791 17297 . + . ID=Physo143843.3;Parent=Physo143843;constitutive=1;rank=3 scaffold_154 ensembl protein_coding_gene 18435 19829 . + . ID=Physo143844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540008;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 18435 19829 . + . ID=Physo143844;Parent=Physo143844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 18435 19016 . + 0 ID=Physo143844;Parent=Physo143844;rank=1 scaffold_154 . exon 18435 19016 . + . ID=Physo143844.1;Parent=Physo143844;constitutive=1;rank=1 scaffold_154 . CDS 19038 19829 . + 0 ID=Physo143844;Parent=Physo143844;rank=2 scaffold_154 . biological_region 18811 18813 0.999 - . logic_name=eponine scaffold_154 . biological_region 19029 19031 0.999 - . logic_name=eponine scaffold_154 . biological_region 19311 19313 0.999 + . logic_name=eponine scaffold_154 . biological_region 19578 19578 0.999 + . logic_name=eponine scaffold_154 . biological_region 19671 19680 0.999 - . logic_name=eponine scaffold_154 . biological_region 19706 19709 0.999 - . logic_name=eponine scaffold_154 . exon 19038 19829 . + . ID=Physo143844.2;Parent=Physo143844;constitutive=1;rank=2 scaffold_154 ensembl protein_coding_gene 20066 20578 . - . ID=Physo143845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540009;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 20066 20578 . - . ID=Physo143845;Parent=Physo143845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 20066 20578 . - 0 ID=Physo143845;Parent=Physo143845;rank=1 scaffold_154 . exon 20066 20578 . - . ID=Physo143845.1;Parent=Physo143845;constitutive=1;rank=1 scaffold_154 ensembl protein_coding_gene 22141 22830 . + . ID=Physo143846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540010;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 22141 22830 . + . ID=Physo143846;Parent=Physo143846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 22141 22335 . + 0 ID=Physo143846;Parent=Physo143846;rank=1 scaffold_154 . exon 22141 22335 . + . ID=Physo143846.1;Parent=Physo143846;constitutive=1;rank=1 scaffold_154 . CDS 22405 22830 . + 0 ID=Physo143846;Parent=Physo143846;rank=2 scaffold_154 . exon 22405 22830 . + . ID=Physo143846.2;Parent=Physo143846;constitutive=1;rank=2 scaffold_154 . repeat_region 31233 31258 . ? . description=dust scaffold_154 . repeat_region 32175 32182 . ? . description=dust scaffold_154 . repeat_region 33653 33709 . ? . description=dust scaffold_154 . repeat_region 33655 33709 . ? . description=trf scaffold_154 . repeat_region 33659 33709 . ? . description=trf scaffold_154 . repeat_region 33670 33700 . ? . description=trf scaffold_154 . repeat_region 34288 34298 . ? . description=dust scaffold_154 . repeat_region 35056 35197 . ? . description=trf scaffold_154 . repeat_region 37258 37277 . ? . description=dust scaffold_154 . repeat_region 37258 37277 . ? . description=trf scaffold_154 . repeat_region 37323 37397 . + . description=(TCG)n scaffold_154 . repeat_region 37327 37367 . ? . description=trf scaffold_154 ensembl protein_coding_gene 32193 33278 . - . ID=Physo143847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540011;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 32193 33278 . - . ID=Physo143847;Parent=Physo143847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 32193 33278 . - 0 ID=Physo143847;Parent=Physo143847;rank=1 scaffold_154 . exon 32193 33278 . - . ID=Physo143847.1;Parent=Physo143847;constitutive=1;rank=1 scaffold_154 . biological_region 38496 38497 0.999 + . logic_name=eponine scaffold_154 . biological_region 38779 38782 0.999 - . logic_name=eponine scaffold_154 . biological_region 38855 38856 0.999 + . logic_name=eponine scaffold_154 . biological_region 38894 38898 0.999 + . logic_name=eponine scaffold_154 . biological_region 38972 38972 0.999 - . logic_name=eponine scaffold_154 . biological_region 39738 39741 0.999 + . logic_name=eponine scaffold_154 . biological_region 39792 39797 0.999 + . logic_name=eponine scaffold_154 . biological_region 41589 41590 0.999 + . logic_name=eponine scaffold_154 . biological_region 41643 41647 0.999 - . logic_name=eponine scaffold_154 . biological_region 41653 41656 0.999 + . logic_name=eponine scaffold_154 . biological_region 44013 44014 0.999 - . logic_name=eponine scaffold_154 ensembl protein_coding_gene 37874 39067 . - . ID=Physo109594;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1540002;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 37874 39067 . - . ID=Physo109594;Parent=Physo109594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 37874 39067 . - 0 ID=Physo109594;Parent=Physo109594;rank=1 scaffold_154 . exon 37874 39067 . - . ID=Physo109594.1;Parent=Physo109594;constitutive=1;rank=1 scaffold_154 ensembl protein_coding_gene 39525 42738 . - . ID=Physo143849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540013;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 39525 42738 . - . ID=Physo143849;Parent=Physo143849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 39525 41212 . - 0 ID=Physo143849;Parent=Physo143849;rank=5 scaffold_154 . exon 39525 41212 . - . ID=Physo143849.5;Parent=Physo143849;constitutive=1;ensembl_phase=1;rank=5 scaffold_154 . CDS 41290 41777 . - 0 ID=Physo143849;Parent=Physo143849;rank=4 scaffold_154 . exon 41290 41777 . - . ID=Physo143849.4;Parent=Physo143849;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_154 . CDS 41857 41933 . - 0 ID=Physo143849;Parent=Physo143849;rank=3 scaffold_154 . exon 41857 41933 . - . ID=Physo143849.3;Parent=Physo143849;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_154 . CDS 42163 42230 . - 0 ID=Physo143849;Parent=Physo143849;rank=2 scaffold_154 . exon 42163 42230 . - . ID=Physo143849.2;Parent=Physo143849;constitutive=1;ensembl_phase=1;rank=2 scaffold_154 . CDS 42678 42738 . - 0 ID=Physo143849;Parent=Physo143849;rank=1 scaffold_154 . exon 42678 42738 . - . ID=Physo143849.1;Parent=Physo143849;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_154 ensembl protein_coding_gene 43507 44896 . - . ID=Physo143850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540014;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 43507 44896 . - . ID=Physo143850;Parent=Physo143850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 43507 44250 . - 0 ID=Physo143850;Parent=Physo143850;rank=4 scaffold_154 . exon 43507 44250 . - . ID=Physo143850.4;Parent=Physo143850;constitutive=1;rank=4 scaffold_154 . CDS 44320 44597 . - 0 ID=Physo143850;Parent=Physo143850;rank=3 scaffold_154 . exon 44320 44597 . - . ID=Physo143850.3;Parent=Physo143850;constitutive=1;ensembl_phase=1;rank=3 scaffold_154 . CDS 44684 44830 . - 0 ID=Physo143850;Parent=Physo143850;rank=2 scaffold_154 . exon 44684 44830 . - . ID=Physo143850.2;Parent=Physo143850;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_154 . CDS 44863 44896 . - 0 ID=Physo143850;Parent=Physo143850;rank=1 scaffold_154 . exon 44863 44896 . - . ID=Physo143850.1;Parent=Physo143850;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_154 . repeat_region 54490 54533 . ? . description=trf scaffold_154 ensembl protein_coding_gene 47760 48595 . - . ID=Physo109595;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1540003;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 47760 48595 . - . ID=Physo109595;Parent=Physo109595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 47760 47882 . - 0 ID=Physo109595;Parent=Physo109595;rank=4 scaffold_154 . exon 47760 47882 . - . ID=Physo109595.4;Parent=Physo109595;constitutive=1;rank=4 scaffold_154 . CDS 48080 48148 . - 0 ID=Physo109595;Parent=Physo109595;rank=3 scaffold_154 . exon 48080 48148 . - . ID=Physo109595.3;Parent=Physo109595;constitutive=1;rank=3 scaffold_154 . CDS 48222 48314 . - 0 ID=Physo109595;Parent=Physo109595;rank=2 scaffold_154 . exon 48222 48314 . - . ID=Physo109595.2;Parent=Physo109595;constitutive=1;rank=2 scaffold_154 . CDS 48415 48552 . - 0 ID=Physo109595;Parent=Physo109595;rank=1 scaffold_154 . exon 48415 48595 . - . ID=Physo109595.1;Parent=Physo109595;constitutive=1;ensembl_phase=-1;rank=1 scaffold_154 ensembl protein_coding_gene 48691 50247 . + . ID=Physo143852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540016;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 48691 50247 . + . ID=Physo143852;Parent=Physo143852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 48691 48915 . + 0 ID=Physo143852;Parent=Physo143852;rank=1 scaffold_154 . exon 48691 48915 . + . ID=Physo143852.1;Parent=Physo143852;constitutive=1;rank=1 scaffold_154 . CDS 49005 49262 . + 0 ID=Physo143852;Parent=Physo143852;rank=2 scaffold_154 . exon 49005 49262 . + . ID=Physo143852.2;Parent=Physo143852;constitutive=1;rank=2 scaffold_154 . CDS 49329 49394 . + 0 ID=Physo143852;Parent=Physo143852;rank=3 scaffold_154 . exon 49329 49394 . + . ID=Physo143852.3;Parent=Physo143852;constitutive=1;rank=3 scaffold_154 . CDS 49580 50108 . + 0 ID=Physo143852;Parent=Physo143852;rank=4 scaffold_154 . exon 49580 50108 . + . ID=Physo143852.4;Parent=Physo143852;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_154 . CDS 50237 50247 . + 0 ID=Physo143852;Parent=Physo143852;rank=5 scaffold_154 . exon 50237 50247 . + . ID=Physo143852.5;Parent=Physo143852;constitutive=1;ensembl_phase=1;rank=5 scaffold_154 ensembl protein_coding_gene 53521 53934 . - . ID=Physo143853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540017;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 53521 53934 . - . ID=Physo143853;Parent=Physo143853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 53521 53535 . - 0 ID=Physo143853;Parent=Physo143853;rank=2 scaffold_154 . exon 53521 53535 . - . ID=Physo143853.2;Parent=Physo143853;constitutive=1;rank=2 scaffold_154 . CDS 53617 53934 . - 0 ID=Physo143853;Parent=Physo143853;rank=1 scaffold_154 . exon 53617 53934 . - . ID=Physo143853.1;Parent=Physo143853;constitutive=1;rank=1 scaffold_154 . repeat_region 56780 56789 . ? . description=dust scaffold_154 . biological_region 59224 59230 0.999 + . logic_name=eponine scaffold_154 . biological_region 59281 59285 0.999 - . logic_name=eponine scaffold_154 . biological_region 59360 59361 0.999 - . logic_name=eponine scaffold_154 . biological_region 59482 59485 0.999 + . logic_name=eponine scaffold_154 . biological_region 59623 59627 0.999 - . logic_name=eponine scaffold_154 ensembl protein_coding_gene 61903 64490 . + . ID=Physo143855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540019;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 61903 64490 . + . ID=Physo143855;Parent=Physo143855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 61903 62068 . + 0 ID=Physo143855;Parent=Physo143855;rank=1 scaffold_154 . exon 61903 62068 . + . ID=Physo143855.1;Parent=Physo143855;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_154 . CDS 62131 62402 . + 0 ID=Physo143855;Parent=Physo143855;rank=2 scaffold_154 . exon 62131 62402 . + . ID=Physo143855.2;Parent=Physo143855;constitutive=1;ensembl_phase=1;rank=2 scaffold_154 . CDS 62462 63122 . + 0 ID=Physo143855;Parent=Physo143855;rank=3 scaffold_154 . exon 62462 63122 . + . ID=Physo143855.3;Parent=Physo143855;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_154 . CDS 63198 63427 . + 0 ID=Physo143855;Parent=Physo143855;rank=4 scaffold_154 . exon 63198 63427 . + . ID=Physo143855.4;Parent=Physo143855;constitutive=1;ensembl_phase=1;rank=4 scaffold_154 . CDS 63581 63903 . + 0 ID=Physo143855;Parent=Physo143855;rank=5 scaffold_154 . exon 63581 63903 . + . ID=Physo143855.5;Parent=Physo143855;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_154 . CDS 63983 64490 . + 0 ID=Physo143855;Parent=Physo143855;rank=6 scaffold_154 . exon 63983 64490 . + . ID=Physo143855.6;Parent=Physo143855;constitutive=1;ensembl_phase=2;rank=6 scaffold_154 ensembl protein_coding_gene 57955 61420 . - . ID=Physo158833;biotype=protein_coding;external_name=C_scaffold_154000005;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 57955 61420 . - . ID=Physo158833;Parent=Physo158833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 57955 58104 . - 0 ID=Physo158833;Parent=Physo158833;rank=13 scaffold_154 . exon 57955 58104 . - . ID=Physo158833.13;Parent=Physo158833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_154 . CDS 58126 58495 . - 0 ID=Physo158833;Parent=Physo158833;rank=12 scaffold_154 . exon 58126 58495 . - . ID=Physo158833.12;Parent=Physo158833;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_154 . CDS 58517 58642 . - 0 ID=Physo158833;Parent=Physo158833;rank=11 scaffold_154 . exon 58517 58642 . - . ID=Physo158833.11;Parent=Physo158833;constitutive=1;rank=11 scaffold_154 . CDS 58670 59104 . - 0 ID=Physo158833;Parent=Physo158833;rank=10 scaffold_154 . exon 58670 59104 . - . ID=Physo158833.10;Parent=Physo158833;constitutive=1;rank=10 scaffold_154 . CDS 59239 59385 . - 0 ID=Physo158833;Parent=Physo158833;rank=9 scaffold_154 . exon 59239 59385 . - . ID=Physo158833.9;Parent=Physo158833;constitutive=1;rank=9 scaffold_154 . CDS 59806 59984 . - 0 ID=Physo158833;Parent=Physo158833;rank=8 scaffold_154 . exon 59806 59984 . - . ID=Physo158833.8;Parent=Physo158833;constitutive=1;ensembl_phase=1;rank=8 scaffold_154 . CDS 60065 60143 . - 0 ID=Physo158833;Parent=Physo158833;rank=7 scaffold_154 . exon 60065 60143 . - . ID=Physo158833.7;Parent=Physo158833;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_154 . CDS 60214 60476 . - 0 ID=Physo158833;Parent=Physo158833;rank=6 scaffold_154 . exon 60214 60476 . - . ID=Physo158833.6;Parent=Physo158833;constitutive=1;ensembl_phase=1;rank=6 scaffold_154 . CDS 60538 60691 . - 0 ID=Physo158833;Parent=Physo158833;rank=5 scaffold_154 . exon 60538 60691 . - . ID=Physo158833.5;Parent=Physo158833;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_154 . CDS 60768 60854 . - 0 ID=Physo158833;Parent=Physo158833;rank=4 scaffold_154 . exon 60768 60854 . - . ID=Physo158833.4;Parent=Physo158833;constitutive=1;rank=4 scaffold_154 . CDS 60953 61077 . - 0 ID=Physo158833;Parent=Physo158833;rank=3 scaffold_154 . exon 60953 61077 . - . ID=Physo158833.3;Parent=Physo158833;constitutive=1;ensembl_phase=1;rank=3 scaffold_154 . CDS 61143 61215 . - 0 ID=Physo158833;Parent=Physo158833;rank=2 scaffold_154 . exon 61143 61215 . - . ID=Physo158833.2;Parent=Physo158833;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_154 . CDS 61280 61420 . - 0 ID=Physo158833;Parent=Physo158833;rank=1 scaffold_154 . exon 61280 61420 . - . ID=Physo158833.1;Parent=Physo158833;constitutive=1;rank=1 scaffold_154 . repeat_region 66242 66288 . ? . description=trf scaffold_154 ensembl protein_coding_gene 71914 72773 . + . ID=Physo109596;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1540004;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 71914 72773 . + . ID=Physo109596;Parent=Physo109596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . exon 71914 72285 . + . ID=Physo109596.1;Parent=Physo109596;constitutive=1;ensembl_phase=-1;rank=1 scaffold_154 . CDS 71932 72285 . + 0 ID=Physo109596;Parent=Physo109596;rank=1 scaffold_154 . CDS 72526 72639 . + 0 ID=Physo109596;Parent=Physo109596;rank=2 scaffold_154 . exon 72526 72773 . + . ID=Physo109596.2;Parent=Physo109596;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_154 ensembl protein_coding_gene 66229 66960 . + . ID=Physo143856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540020;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 66229 66960 . + . ID=Physo143856;Parent=Physo143856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 66229 66960 . + 0 ID=Physo143856;Parent=Physo143856;rank=1 scaffold_154 . exon 66229 66960 . + . ID=Physo143856.1;Parent=Physo143856;constitutive=1;rank=1 scaffold_154 ensembl protein_coding_gene 67864 69666 . - . ID=Physo143857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540021;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 67864 69666 . - . ID=Physo143857;Parent=Physo143857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 67864 68235 . - 0 ID=Physo143857;Parent=Physo143857;rank=4 scaffold_154 . exon 67864 68235 . - . ID=Physo143857.4;Parent=Physo143857;constitutive=1;rank=4 scaffold_154 . CDS 68319 68395 . - 0 ID=Physo143857;Parent=Physo143857;rank=3 scaffold_154 . exon 68319 68395 . - . ID=Physo143857.3;Parent=Physo143857;constitutive=1;ensembl_phase=1;rank=3 scaffold_154 . CDS 68476 69637 . - 0 ID=Physo143857;Parent=Physo143857;rank=2 scaffold_154 . exon 68476 69637 . - . ID=Physo143857.2;Parent=Physo143857;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_154 . CDS 69664 69666 . - 0 ID=Physo143857;Parent=Physo143857;rank=1 scaffold_154 . exon 69664 69666 . - . ID=Physo143857.1;Parent=Physo143857;constitutive=1;rank=1 scaffold_154 ensembl protein_coding_gene 69862 70603 . + . ID=Physo143858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540022;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 69862 70603 . + . ID=Physo143858;Parent=Physo143858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 69862 69998 . + 0 ID=Physo143858;Parent=Physo143858;rank=1 scaffold_154 . exon 69862 69998 . + . ID=Physo143858.1;Parent=Physo143858;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_154 . CDS 70076 70194 . + 0 ID=Physo143858;Parent=Physo143858;rank=2 scaffold_154 . exon 70076 70194 . + . ID=Physo143858.2;Parent=Physo143858;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_154 . CDS 70272 70603 . + 0 ID=Physo143858;Parent=Physo143858;rank=3 scaffold_154 . exon 70272 70603 . + . ID=Physo143858.3;Parent=Physo143858;constitutive=1;ensembl_phase=1;rank=3 scaffold_154 ensembl protein_coding_gene 70657 71693 . - . ID=Physo143859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1540023;logic_name=jgi_physo1_1 scaffold_154 ensembl transcript 70657 71693 . - . ID=Physo143859;Parent=Physo143859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_154 . CDS 70657 70995 . - 0 ID=Physo143859;Parent=Physo143859;rank=4 scaffold_154 . exon 70657 70995 . - . ID=Physo143859.4;Parent=Physo143859;constitutive=1;rank=4 scaffold_154 . CDS 71068 71217 . - 0 ID=Physo143859;Parent=Physo143859;rank=3 scaffold_154 . exon 71068 71217 . - . ID=Physo143859.3;Parent=Physo143859;constitutive=1;rank=3 scaffold_154 . CDS 71287 71549 . - 0 ID=Physo143859;Parent=Physo143859;rank=2 scaffold_154 . exon 71287 71549 . - . ID=Physo143859.2;Parent=Physo143859;constitutive=1;ensembl_phase=1;rank=2 scaffold_154 . CDS 71630 71693 . - 0 ID=Physo143859;Parent=Physo143859;rank=1 scaffold_154 . exon 71630 71693 . - . ID=Physo143859.1;Parent=Physo143859;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_154 . repeat_region 78501 79494 . ? . description=dust scaffold_154 . repeat_region 79552 79559 . ? . description=dust scaffold_154 . repeat_region 80389 82460 . ? . description=dust scaffold_154 . repeat_region 84371 84443 . - . description=Polinton-1_PI scaffold_154 . repeat_region 84445 94627 . ? . description=dust scaffold_154 . repeat_region 95765 97499 . ? . description=dust scaffold_154 . repeat_region 98349 103816 . ? . description=dust scaffold_154 . repeat_region 110955 112334 . - . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_157 1 114093 scaffold_157 . repeat_region 481 576 . ? . description=dust scaffold_157 . biological_region 1621 1625 0.999 + . logic_name=eponine scaffold_157 . biological_region 3163 3163 0.999 + . logic_name=eponine scaffold_157 . biological_region 3881 3884 0.999 - . logic_name=eponine scaffold_157 . biological_region 3900 3903 0.999 - . logic_name=eponine scaffold_157 . biological_region 5220 5220 0.999 + . logic_name=eponine scaffold_157 . repeat_region 6654 6682 . ? . description=dust scaffold_157 . repeat_region 6654 6682 . ? . description=trf scaffold_157 . repeat_region 6711 6738 . ? . description=dust scaffold_157 . repeat_region 6845 6874 . ? . description=trf scaffold_157 ensembl tRNA_gene 977 1049 . - . ID=EPrPSOG00000000036;biotype=tRNA;description=tRNA-Lys for anticodon CUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_157 ensembl transcript 977 1049 . - . ID=EPrPSOT00000000036;Parent=EPrPSOG00000000036;biotype=tRNA;logic_name=ncrna_eg scaffold_157 ensembl tRNA_gene 401 473 . - . ID=EPrPSOG00000000292;biotype=tRNA;description=tRNA-Lys for anticodon CUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_157 ensembl transcript 401 473 . - . ID=EPrPSOT00000000292;Parent=EPrPSOG00000000292;biotype=tRNA;logic_name=ncrna_eg scaffold_157 . exon 977 1049 . - . ID=EPrPSOE00000000036;Parent=EPrPSOT00000000036;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_157 . exon 401 473 . - . ID=EPrPSOE00000000292;Parent=EPrPSOT00000000292;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_157 ensembl protein_coding_gene 9303 11051 . + . ID=Physo124366;biotype=protein_coding;external_name=estExt_Genewise1.C_1570007;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 9303 11051 . + . ID=Physo124366;Parent=Physo124366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . exon 9303 9468 . + . ID=Physo124366.1;Parent=Physo124366;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_157 . CDS 9342 9468 . + 0 ID=Physo124366;Parent=Physo124366;rank=1 scaffold_157 . CDS 10474 10586 . + 0 ID=Physo124366;Parent=Physo124366;rank=2 scaffold_157 . CDS 10683 11051 . + 0 ID=Physo124366;Parent=Physo124366;rank=3 scaffold_157 ensembl protein_coding_gene 86 3095 . + . ID=Physo143891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570001;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 86 3095 . + . ID=Physo143891;Parent=Physo143891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . exon 86 214 . + . ID=Physo143891.1;Parent=Physo143891;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_157 . exon 662 971 . + . ID=Physo143891.2;Parent=Physo143891;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_157 . CDS 886 971 . + 0 ID=Physo143891;Parent=Physo143891;rank=1 scaffold_157 . CDS 1118 1324 . + 0 ID=Physo143891;Parent=Physo143891;rank=2 scaffold_157 . exon 1118 1324 . + . ID=Physo143891.3;Parent=Physo143891;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_157 . CDS 1402 1622 . + 0 ID=Physo143891;Parent=Physo143891;rank=3 scaffold_157 . exon 1402 1622 . + . ID=Physo143891.4;Parent=Physo143891;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_157 . CDS 1696 1929 . + 0 ID=Physo143891;Parent=Physo143891;rank=4 scaffold_157 . exon 1696 1929 . + . ID=Physo143891.5;Parent=Physo143891;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_157 . CDS 2033 2370 . + 0 ID=Physo143891;Parent=Physo143891;rank=5 scaffold_157 . exon 2033 2370 . + . ID=Physo143891.6;Parent=Physo143891;constitutive=1;ensembl_phase=1;rank=6 scaffold_157 . CDS 2424 2612 . + 0 ID=Physo143891;Parent=Physo143891;rank=6 scaffold_157 . exon 2424 2612 . + . ID=Physo143891.7;Parent=Physo143891;constitutive=1;rank=7 scaffold_157 . CDS 2871 3095 . + 0 ID=Physo143891;Parent=Physo143891;rank=7 scaffold_157 . exon 2871 3095 . + . ID=Physo143891.8;Parent=Physo143891;constitutive=1;rank=8 scaffold_157 . exon 10474 10586 . + . ID=Physo124366.2;Parent=Physo124366;constitutive=1;ensembl_phase=1;rank=2 scaffold_157 . exon 10683 11051 . + . ID=Physo124366.3;Parent=Physo124366;constitutive=1;rank=3 scaffold_157 ensembl protein_coding_gene 17036 20265 . + . ID=Physo143894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570004;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 17036 20265 . + . ID=Physo143894;Parent=Physo143894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 17036 17090 . + 0 ID=Physo143894;Parent=Physo143894;rank=1 scaffold_157 . exon 17036 17090 . + . ID=Physo143894.1;Parent=Physo143894;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_157 . CDS 17232 17329 . + 0 ID=Physo143894;Parent=Physo143894;rank=2 scaffold_157 . exon 17232 17329 . + . ID=Physo143894.2;Parent=Physo143894;constitutive=1;ensembl_phase=1;rank=2 scaffold_157 . CDS 17349 17935 . + 0 ID=Physo143894;Parent=Physo143894;rank=3 scaffold_157 . exon 17349 17935 . + . ID=Physo143894.3;Parent=Physo143894;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_157 . CDS 18081 19048 . + 0 ID=Physo143894;Parent=Physo143894;rank=4 scaffold_157 . exon 18081 19048 . + . ID=Physo143894.4;Parent=Physo143894;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_157 . CDS 19396 19672 . + 0 ID=Physo143894;Parent=Physo143894;rank=5 scaffold_157 . CDS 19705 19837 . + 0 ID=Physo143894;Parent=Physo143894;rank=6 scaffold_157 . CDS 19876 20265 . + 0 ID=Physo143894;Parent=Physo143894;rank=7 scaffold_157 . repeat_region 19295 19322 . ? . description=trf scaffold_157 . biological_region 19362 19364 0.999 + . logic_name=eponine scaffold_157 . biological_region 19386 19387 0.999 - . logic_name=eponine scaffold_157 . biological_region 19395 19398 0.999 - . logic_name=eponine scaffold_157 . biological_region 19420 19430 0.999 + . logic_name=eponine scaffold_157 . repeat_region 19468 19533 . ? . description=trf scaffold_157 . biological_region 19478 19478 0.999 - . logic_name=eponine scaffold_157 . biological_region 19485 19491 0.999 + . logic_name=eponine scaffold_157 . biological_region 19507 19514 0.999 - . logic_name=eponine scaffold_157 . biological_region 19517 19523 0.999 - . logic_name=eponine scaffold_157 . biological_region 19573 19589 0.999 - . logic_name=eponine scaffold_157 . biological_region 19708 19713 0.999 - . logic_name=eponine scaffold_157 . biological_region 19946 19949 0.999 - . logic_name=eponine scaffold_157 . biological_region 20025 20026 0.999 - . logic_name=eponine scaffold_157 . biological_region 20559 20560 0.999 - . logic_name=eponine scaffold_157 . biological_region 20938 20939 0.999 + . logic_name=eponine scaffold_157 . biological_region 20946 20948 0.999 - . logic_name=eponine scaffold_157 . biological_region 21115 21116 0.999 + . logic_name=eponine scaffold_157 . biological_region 21189 21193 0.999 - . logic_name=eponine scaffold_157 . biological_region 21211 21214 0.999 - . logic_name=eponine scaffold_157 . biological_region 21356 21362 0.999 - . logic_name=eponine scaffold_157 . biological_region 21588 21589 0.999 - . logic_name=eponine scaffold_157 . biological_region 21640 21644 0.999 + . logic_name=eponine scaffold_157 . biological_region 21650 21652 0.999 - . logic_name=eponine scaffold_157 . biological_region 21889 21893 0.999 - . logic_name=eponine scaffold_157 . biological_region 22580 22585 0.999 - . logic_name=eponine scaffold_157 . biological_region 23081 23082 0.999 - . logic_name=eponine scaffold_157 . biological_region 23243 23243 0.999 - . logic_name=eponine scaffold_157 . biological_region 23635 23637 0.999 + . logic_name=eponine scaffold_157 . biological_region 23714 23716 0.999 + . logic_name=eponine scaffold_157 . biological_region 24702 24706 0.999 - . logic_name=eponine scaffold_157 . repeat_region 24918 24986 . ? . description=trf scaffold_157 . biological_region 25034 25036 0.999 - . logic_name=eponine scaffold_157 . biological_region 25214 25216 0.999 + . logic_name=eponine scaffold_157 . biological_region 25999 26007 0.999 + . logic_name=eponine scaffold_157 . biological_region 26579 26582 0.999 + . logic_name=eponine scaffold_157 . biological_region 26628 26632 0.999 - . logic_name=eponine scaffold_157 . biological_region 26669 26672 0.999 - . logic_name=eponine scaffold_157 . biological_region 27287 27290 0.999 + . logic_name=eponine scaffold_157 . biological_region 27634 27647 0.999 + . logic_name=eponine scaffold_157 . biological_region 27686 27693 0.999 + . logic_name=eponine scaffold_157 . biological_region 27719 27724 0.999 + . logic_name=eponine scaffold_157 . repeat_region 27736 27789 . ? . description=trf scaffold_157 . biological_region 27747 27753 0.999 + . logic_name=eponine scaffold_157 . biological_region 27761 27767 0.999 - . logic_name=eponine scaffold_157 . repeat_region 28010 28059 . ? . description=dust scaffold_157 . biological_region 28206 28209 0.999 + . logic_name=eponine scaffold_157 . repeat_region 28393 28405 . ? . description=dust scaffold_157 . exon 19396 19672 . + . ID=Physo143894.5;Parent=Physo143894;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_157 . exon 19705 19837 . + . ID=Physo143894.6;Parent=Physo143894;constitutive=1;ensembl_phase=2;rank=6 scaffold_157 . exon 19876 20265 . + . ID=Physo143894.7;Parent=Physo143894;constitutive=1;rank=7 scaffold_157 ensembl protein_coding_gene 21385 28005 . - . ID=Physo143895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570005;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 21385 28005 . - . ID=Physo143895;Parent=Physo143895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 21385 23104 . - 0 ID=Physo143895;Parent=Physo143895;rank=10 scaffold_157 . exon 21385 23104 . - . ID=Physo143895.10;Parent=Physo143895;constitutive=1;ensembl_phase=2;rank=10 scaffold_157 . CDS 23126 23999 . - 0 ID=Physo143895;Parent=Physo143895;rank=9 scaffold_157 . exon 23126 23999 . - . ID=Physo143895.9;Parent=Physo143895;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_157 . CDS 24044 24521 . - 0 ID=Physo143895;Parent=Physo143895;rank=8 scaffold_157 . exon 24044 24521 . - . ID=Physo143895.8;Parent=Physo143895;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_157 . CDS 24567 24943 . - 0 ID=Physo143895;Parent=Physo143895;rank=7 scaffold_157 . exon 24567 24943 . - . ID=Physo143895.7;Parent=Physo143895;constitutive=1;ensembl_phase=1;rank=7 scaffold_157 . CDS 25092 25290 . - 0 ID=Physo143895;Parent=Physo143895;rank=6 scaffold_157 . exon 25092 25290 . - . ID=Physo143895.6;Parent=Physo143895;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_157 . CDS 25555 25780 . - 0 ID=Physo143895;Parent=Physo143895;rank=5 scaffold_157 . exon 25555 25780 . - . ID=Physo143895.5;Parent=Physo143895;constitutive=1;ensembl_phase=2;rank=5 scaffold_157 . CDS 25854 26082 . - 0 ID=Physo143895;Parent=Physo143895;rank=4 scaffold_157 . exon 25854 26082 . - . ID=Physo143895.4;Parent=Physo143895;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_157 . CDS 26594 26858 . - 0 ID=Physo143895;Parent=Physo143895;rank=3 scaffold_157 . exon 26594 26858 . - . ID=Physo143895.3;Parent=Physo143895;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_157 . CDS 26908 27345 . - 0 ID=Physo143895;Parent=Physo143895;rank=2 scaffold_157 . exon 26908 27345 . - . ID=Physo143895.2;Parent=Physo143895;constitutive=1;rank=2 scaffold_157 . CDS 27397 28005 . - 0 ID=Physo143895;Parent=Physo143895;rank=1 scaffold_157 . exon 27397 28005 . - . ID=Physo143895.1;Parent=Physo143895;constitutive=1;rank=1 scaffold_157 . repeat_region 29748 46989 . ? . description=dust scaffold_157 ensembl protein_coding_gene 47025 47192 . + . ID=Physo124371;biotype=protein_coding;external_name=estExt_Genewise1.C_1570012;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 47025 47192 . + . ID=Physo124371;Parent=Physo124371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 47025 47192 . + 0 ID=Physo124371;Parent=Physo124371;rank=1 scaffold_157 . exon 47025 47192 . + . ID=Physo124371.1;Parent=Physo124371;constitutive=1;rank=1 scaffold_157 . biological_region 51078 51081 0.999 + . logic_name=eponine scaffold_157 . biological_region 51205 51206 0.999 - . logic_name=eponine scaffold_157 . biological_region 51741 51748 0.999 + . logic_name=eponine scaffold_157 ensembl protein_coding_gene 49241 51583 . - . ID=Physo143896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570006;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 49241 51583 . - . ID=Physo143896;Parent=Physo143896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 49241 49251 . - 0 ID=Physo143896;Parent=Physo143896;rank=6 scaffold_157 . exon 49241 49251 . - . ID=Physo143896.6;Parent=Physo143896;constitutive=1;ensembl_phase=1;rank=6 scaffold_157 . CDS 49299 50361 . - 0 ID=Physo143896;Parent=Physo143896;rank=5 scaffold_157 . exon 49299 50361 . - . ID=Physo143896.5;Parent=Physo143896;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_157 . CDS 50474 50638 . - 0 ID=Physo143896;Parent=Physo143896;rank=4 scaffold_157 . exon 50474 50638 . - . ID=Physo143896.4;Parent=Physo143896;constitutive=1;rank=4 scaffold_157 . CDS 50709 50801 . - 0 ID=Physo143896;Parent=Physo143896;rank=3 scaffold_157 . exon 50709 50801 . - . ID=Physo143896.3;Parent=Physo143896;constitutive=1;rank=3 scaffold_157 . CDS 50908 51183 . - 0 ID=Physo143896;Parent=Physo143896;rank=2 scaffold_157 . exon 50908 51183 . - . ID=Physo143896.2;Parent=Physo143896;constitutive=1;rank=2 scaffold_157 . CDS 51395 51583 . - 0 ID=Physo143896;Parent=Physo143896;rank=1 scaffold_157 . exon 51395 51583 . - . ID=Physo143896.1;Parent=Physo143896;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 53329 55080 . + . ID=Physo143897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570007;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 53329 55080 . + . ID=Physo143897;Parent=Physo143897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 53329 53481 . + 0 ID=Physo143897;Parent=Physo143897;rank=1 scaffold_157 . exon 53329 53481 . + . ID=Physo143897.1;Parent=Physo143897;constitutive=1;rank=1 scaffold_157 . CDS 53554 53737 . + 0 ID=Physo143897;Parent=Physo143897;rank=2 scaffold_157 . exon 53554 53737 . + . ID=Physo143897.2;Parent=Physo143897;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_157 . CDS 53793 53849 . + 0 ID=Physo143897;Parent=Physo143897;rank=3 scaffold_157 . exon 53793 53849 . + . ID=Physo143897.3;Parent=Physo143897;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_157 . CDS 53934 54016 . + 0 ID=Physo143897;Parent=Physo143897;rank=4 scaffold_157 . exon 53934 54016 . + . ID=Physo143897.4;Parent=Physo143897;constitutive=1;ensembl_phase=1;rank=4 scaffold_157 . CDS 54067 54213 . + 0 ID=Physo143897;Parent=Physo143897;rank=5 scaffold_157 . exon 54067 54213 . + . ID=Physo143897.5;Parent=Physo143897;constitutive=1;rank=5 scaffold_157 . CDS 54326 55004 . + 0 ID=Physo143897;Parent=Physo143897;rank=6 scaffold_157 . exon 54326 55004 . + . ID=Physo143897.6;Parent=Physo143897;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_157 . CDS 55037 55080 . + 0 ID=Physo143897;Parent=Physo143897;rank=7 scaffold_157 . exon 55037 55080 . + . ID=Physo143897.7;Parent=Physo143897;constitutive=1;ensembl_phase=1;rank=7 scaffold_157 ensembl protein_coding_gene 56341 58387 . - . ID=Physo143898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570008;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 56341 58387 . - . ID=Physo143898;Parent=Physo143898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 56341 57486 . - 0 ID=Physo143898;Parent=Physo143898;rank=5 scaffold_157 . exon 56341 57486 . - . ID=Physo143898.5;Parent=Physo143898;constitutive=1;rank=5 scaffold_157 . CDS 57545 57643 . - 0 ID=Physo143898;Parent=Physo143898;rank=4 scaffold_157 . CDS 57719 57811 . - 0 ID=Physo143898;Parent=Physo143898;rank=3 scaffold_157 . CDS 57887 58171 . - 0 ID=Physo143898;Parent=Physo143898;rank=2 scaffold_157 . CDS 58246 58359 . - 0 ID=Physo143898;Parent=Physo143898;rank=1 scaffold_157 . repeat_region 59034 59114 . ? . description=dust scaffold_157 . repeat_region 65933 65964 . ? . description=trf scaffold_157 . exon 57545 57643 . - . ID=Physo143898.4;Parent=Physo143898;constitutive=1;rank=4 scaffold_157 . exon 57719 57811 . - . ID=Physo143898.3;Parent=Physo143898;constitutive=1;rank=3 scaffold_157 . exon 57887 58171 . - . ID=Physo143898.2;Parent=Physo143898;constitutive=1;rank=2 scaffold_157 . exon 58246 58387 . - . ID=Physo143898.1;Parent=Physo143898;constitutive=1;ensembl_phase=-1;rank=1 scaffold_157 ensembl protein_coding_gene 59461 61475 . - . ID=Physo143899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570009;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 59461 61475 . - . ID=Physo143899;Parent=Physo143899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 59461 60540 . - 0 ID=Physo143899;Parent=Physo143899;rank=4 scaffold_157 . exon 59461 60540 . - . ID=Physo143899.4;Parent=Physo143899;constitutive=1;rank=4 scaffold_157 . CDS 60637 60735 . - 0 ID=Physo143899;Parent=Physo143899;rank=3 scaffold_157 . exon 60637 60735 . - . ID=Physo143899.3;Parent=Physo143899;constitutive=1;rank=3 scaffold_157 . CDS 60971 61255 . - 0 ID=Physo143899;Parent=Physo143899;rank=2 scaffold_157 . exon 60971 61255 . - . ID=Physo143899.2;Parent=Physo143899;constitutive=1;rank=2 scaffold_157 . CDS 61326 61475 . - 0 ID=Physo143899;Parent=Physo143899;rank=1 scaffold_157 . exon 61326 61475 . - . ID=Physo143899.1;Parent=Physo143899;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 63011 65657 . + . ID=Physo143900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570010;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 63011 65657 . + . ID=Physo143900;Parent=Physo143900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 63011 64242 . + 0 ID=Physo143900;Parent=Physo143900;rank=1 scaffold_157 . exon 63011 64242 . + . ID=Physo143900.1;Parent=Physo143900;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_157 . CDS 64456 65608 . + 0 ID=Physo143900;Parent=Physo143900;rank=2 scaffold_157 . exon 64456 65608 . + . ID=Physo143900.2;Parent=Physo143900;constitutive=1;ensembl_phase=2;rank=2 scaffold_157 . CDS 65649 65657 . + 0 ID=Physo143900;Parent=Physo143900;rank=3 scaffold_157 . exon 65649 65657 . + . ID=Physo143900.3;Parent=Physo143900;constitutive=1;rank=3 scaffold_157 . biological_region 74310 74312 0.999 + . logic_name=eponine scaffold_157 . biological_region 74333 74336 0.999 + . logic_name=eponine scaffold_157 . biological_region 74948 74948 0.999 - . logic_name=eponine scaffold_157 ensembl protein_coding_gene 66993 67528 . + . ID=Physo143901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570011;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 66993 67528 . + . ID=Physo143901;Parent=Physo143901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 66993 67023 . + 0 ID=Physo143901;Parent=Physo143901;rank=1 scaffold_157 . exon 66993 67023 . + . ID=Physo143901.1;Parent=Physo143901;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_157 . CDS 67152 67528 . + 0 ID=Physo143901;Parent=Physo143901;rank=2 scaffold_157 . exon 67152 67528 . + . ID=Physo143901.2;Parent=Physo143901;constitutive=1;ensembl_phase=1;rank=2 scaffold_157 ensembl protein_coding_gene 69971 71867 . + . ID=Physo143902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570012;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 69971 71867 . + . ID=Physo143902;Parent=Physo143902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 69971 70111 . + 0 ID=Physo143902;Parent=Physo143902;rank=1 scaffold_157 . exon 69971 70111 . + . ID=Physo143902.1;Parent=Physo143902;constitutive=1;rank=1 scaffold_157 . CDS 70178 70474 . + 0 ID=Physo143902;Parent=Physo143902;rank=2 scaffold_157 . exon 70178 70474 . + . ID=Physo143902.2;Parent=Physo143902;constitutive=1;rank=2 scaffold_157 . CDS 70544 70735 . + 0 ID=Physo143902;Parent=Physo143902;rank=3 scaffold_157 . exon 70544 70735 . + . ID=Physo143902.3;Parent=Physo143902;constitutive=1;rank=3 scaffold_157 . CDS 70890 71867 . + 0 ID=Physo143902;Parent=Physo143902;rank=4 scaffold_157 . exon 70890 71867 . + . ID=Physo143902.4;Parent=Physo143902;constitutive=1;rank=4 scaffold_157 ensembl protein_coding_gene 74225 75488 . + . ID=Physo143903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570013;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 74225 75488 . + . ID=Physo143903;Parent=Physo143903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 74225 75454 . + 0 ID=Physo143903;Parent=Physo143903;rank=1 scaffold_157 . exon 74225 75488 . + . ID=Physo143903.1;Parent=Physo143903;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_157 ensembl protein_coding_gene 75540 84399 . - . ID=Physo143904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570014;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 75540 84399 . - . ID=Physo143904;Parent=Physo143904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 75540 79610 . - 0 ID=Physo143904;Parent=Physo143904;rank=8 scaffold_157 . exon 75540 79610 . - . ID=Physo143904.8;Parent=Physo143904;constitutive=1;rank=8 scaffold_157 . CDS 79779 79955 . - 0 ID=Physo143904;Parent=Physo143904;rank=7 scaffold_157 . CDS 80523 80776 . - 0 ID=Physo143904;Parent=Physo143904;rank=6 scaffold_157 . CDS 81266 81593 . - 0 ID=Physo143904;Parent=Physo143904;rank=5 scaffold_157 . CDS 81641 82649 . - 0 ID=Physo143904;Parent=Physo143904;rank=4 scaffold_157 . CDS 82955 84102 . - 0 ID=Physo143904;Parent=Physo143904;rank=3 scaffold_157 . CDS 84184 84209 . - 0 ID=Physo143904;Parent=Physo143904;rank=2 scaffold_157 . CDS 84303 84399 . - 0 ID=Physo143904;Parent=Physo143904;rank=1 scaffold_157 . exon 79779 79955 . - . ID=Physo143904.7;Parent=Physo143904;constitutive=1;rank=7 scaffold_157 . exon 80523 80776 . - . ID=Physo143904.6;Parent=Physo143904;constitutive=1;ensembl_phase=1;rank=6 scaffold_157 . exon 81266 81593 . - . ID=Physo143904.5;Parent=Physo143904;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_157 . exon 81641 82649 . - . ID=Physo143904.4;Parent=Physo143904;constitutive=1;ensembl_phase=2;rank=4 scaffold_157 . exon 82955 84102 . - . ID=Physo143904.3;Parent=Physo143904;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_157 . exon 84184 84209 . - . ID=Physo143904.2;Parent=Physo143904;constitutive=1;ensembl_phase=1;rank=2 scaffold_157 . exon 84303 84399 . - . ID=Physo143904.1;Parent=Physo143904;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_157 ensembl protein_coding_gene 85547 86160 . + . ID=Physo143905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570015;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 85547 86160 . + . ID=Physo143905;Parent=Physo143905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 85547 85864 . + 0 ID=Physo143905;Parent=Physo143905;rank=1 scaffold_157 . exon 85547 85864 . + . ID=Physo143905.1;Parent=Physo143905;constitutive=1;rank=1 scaffold_157 . CDS 85945 86160 . + 0 ID=Physo143905;Parent=Physo143905;rank=2 scaffold_157 . biological_region 86948 86948 0.999 - . logic_name=eponine scaffold_157 . repeat_region 87390 87414 . ? . description=dust scaffold_157 . repeat_region 90195 90213 . ? . description=dust scaffold_157 . biological_region 93141 93141 0.999 + . logic_name=eponine scaffold_157 . biological_region 93197 93197 0.999 - . logic_name=eponine scaffold_157 . biological_region 93310 93312 0.999 + . logic_name=eponine scaffold_157 . repeat_region 93510 93558 . + . description=(CTA)n scaffold_157 . repeat_region 93522 93555 . ? . description=dust scaffold_157 . repeat_region 93522 93555 . ? . description=trf scaffold_157 . exon 85945 86160 . + . ID=Physo143905.2;Parent=Physo143905;constitutive=1;rank=2 scaffold_157 ensembl protein_coding_gene 88143 89585 . + . ID=Physo143906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570016;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 88143 89585 . + . ID=Physo143906;Parent=Physo143906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 88143 88295 . + 0 ID=Physo143906;Parent=Physo143906;rank=1 scaffold_157 . exon 88143 88295 . + . ID=Physo143906.1;Parent=Physo143906;constitutive=1;rank=1 scaffold_157 . CDS 88365 88556 . + 0 ID=Physo143906;Parent=Physo143906;rank=2 scaffold_157 . exon 88365 88556 . + . ID=Physo143906.2;Parent=Physo143906;constitutive=1;rank=2 scaffold_157 . CDS 88816 89056 . + 0 ID=Physo143906;Parent=Physo143906;rank=3 scaffold_157 . exon 88816 89056 . + . ID=Physo143906.3;Parent=Physo143906;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_157 . CDS 89081 89516 . + 0 ID=Physo143906;Parent=Physo143906;rank=4 scaffold_157 . exon 89081 89516 . + . ID=Physo143906.4;Parent=Physo143906;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_157 . CDS 89552 89585 . + 0 ID=Physo143906;Parent=Physo143906;rank=5 scaffold_157 . exon 89552 89585 . + . ID=Physo143906.5;Parent=Physo143906;constitutive=1;ensembl_phase=2;rank=5 scaffold_157 ensembl protein_coding_gene 91955 98930 . + . ID=Physo143907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570017;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 91955 98930 . + . ID=Physo143907;Parent=Physo143907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 91955 92014 . + 0 ID=Physo143907;Parent=Physo143907;rank=1 scaffold_157 . exon 91955 92014 . + . ID=Physo143907.1;Parent=Physo143907;constitutive=1;rank=1 scaffold_157 . CDS 92084 92544 . + 0 ID=Physo143907;Parent=Physo143907;rank=2 scaffold_157 . exon 92084 92544 . + . ID=Physo143907.2;Parent=Physo143907;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_157 . CDS 92581 92929 . + 0 ID=Physo143907;Parent=Physo143907;rank=3 scaffold_157 . exon 92581 92929 . + . ID=Physo143907.3;Parent=Physo143907;constitutive=1;ensembl_phase=2;rank=3 scaffold_157 . CDS 93015 93355 . + 0 ID=Physo143907;Parent=Physo143907;rank=4 scaffold_157 . exon 93015 93355 . + . ID=Physo143907.4;Parent=Physo143907;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_157 . CDS 93383 93420 . + 0 ID=Physo143907;Parent=Physo143907;rank=5 scaffold_157 . exon 93383 93420 . + . ID=Physo143907.5;Parent=Physo143907;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_157 . CDS 93637 93728 . + 0 ID=Physo143907;Parent=Physo143907;rank=6 scaffold_157 . exon 93637 93728 . + . ID=Physo143907.6;Parent=Physo143907;constitutive=1;ensembl_phase=1;rank=6 scaffold_157 . CDS 93918 98930 . + 0 ID=Physo143907;Parent=Physo143907;rank=7 scaffold_157 . exon 93918 98930 . + . ID=Physo143907.7;Parent=Physo143907;constitutive=1;rank=7 scaffold_157 ensembl protein_coding_gene 100137 101012 . - . ID=Physo143908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570018;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 100137 101012 . - . ID=Physo143908;Parent=Physo143908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 100137 101012 . - 0 ID=Physo143908;Parent=Physo143908;rank=1 scaffold_157 . exon 100137 101012 . - . ID=Physo143908.1;Parent=Physo143908;constitutive=1;rank=1 scaffold_157 ensembl protein_coding_gene 104344 105535 . - . ID=Physo143909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570019;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 104344 105535 . - . ID=Physo143909;Parent=Physo143909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 104344 105211 . - 0 ID=Physo143909;Parent=Physo143909;rank=2 scaffold_157 . exon 104344 105211 . - . ID=Physo143909.2;Parent=Physo143909;constitutive=1;ensembl_phase=2;rank=2 scaffold_157 . CDS 105300 105535 . - 0 ID=Physo143909;Parent=Physo143909;rank=1 scaffold_157 . repeat_region 109178 109195 . ? . description=dust scaffold_157 . biological_region 109356 109358 0.999 + . logic_name=eponine scaffold_157 . biological_region 109391 109393 0.999 - . logic_name=eponine scaffold_157 . repeat_region 112027 112034 . ? . description=dust scaffold_157 ensembl protein_coding_gene 112585 113659 . + . ID=Physo124401;biotype=protein_coding;external_name=estExt_Genewise1.C_1570042;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 112585 113659 . + . ID=Physo124401;Parent=Physo124401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . exon 112585 113659 . + . ID=Physo124401.1;Parent=Physo124401;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_157 . CDS 112756 113337 . + 0 ID=Physo124401;Parent=Physo124401;rank=1 scaffold_157 . exon 105300 105535 . - . ID=Physo143909.1;Parent=Physo143909;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_157 ensembl protein_coding_gene 109340 110267 . + . ID=Physo143910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1570020;logic_name=jgi_physo1_1 scaffold_157 ensembl transcript 109340 110267 . + . ID=Physo143910;Parent=Physo143910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_157 . CDS 109340 109516 . + 0 ID=Physo143910;Parent=Physo143910;rank=1 scaffold_157 . exon 109340 109516 . + . ID=Physo143910.1;Parent=Physo143910;constitutive=1;rank=1 scaffold_157 . CDS 109604 109715 . + 0 ID=Physo143910;Parent=Physo143910;rank=2 scaffold_157 . exon 109604 109715 . + . ID=Physo143910.2;Parent=Physo143910;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_157 . CDS 109795 110267 . + 0 ID=Physo143910;Parent=Physo143910;rank=3 scaffold_157 . exon 109795 110267 . + . ID=Physo143910.3;Parent=Physo143910;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_159 1 114122 scaffold_159 . repeat_region 6 60 . ? . description=dust scaffold_159 . repeat_region 8 60 . ? . description=trf scaffold_159 . repeat_region 10 57 . ? . description=trf scaffold_159 . repeat_region 28 392 . ? . description=trf scaffold_159 . repeat_region 184 236 . ? . description=trf scaffold_159 . repeat_region 184 549 . ? . description=trf scaffold_159 . repeat_region 187 234 . ? . description=trf scaffold_159 . repeat_region 193 244 . ? . description=dust scaffold_159 . repeat_region 340 393 . ? . description=trf scaffold_159 . repeat_region 343 390 . ? . description=trf scaffold_159 . repeat_region 455 510 . ? . description=trf scaffold_159 . repeat_region 589 1169 . ? . description=trf scaffold_159 . biological_region 669 671 0.999 - . logic_name=eponine scaffold_159 . biological_region 726 728 0.999 + . logic_name=eponine scaffold_159 . biological_region 744 747 0.999 + . logic_name=eponine scaffold_159 . biological_region 955 960 0.999 - . logic_name=eponine scaffold_159 . biological_region 1014 1016 0.999 + . logic_name=eponine scaffold_159 . biological_region 1032 1034 0.999 + . logic_name=eponine scaffold_159 . biological_region 2295 2297 0.999 + . logic_name=eponine scaffold_159 . repeat_region 2299 2327 . ? . description=dust scaffold_159 . repeat_region 2299 2327 . ? . description=trf scaffold_159 . repeat_region 2299 2327 . ? . description=trf scaffold_159 . biological_region 2389 2395 0.999 + . logic_name=eponine scaffold_159 . biological_region 2507 2510 0.999 + . logic_name=eponine scaffold_159 . repeat_region 2757 2924 . ? . description=dust scaffold_159 . repeat_region 3817 3830 . ? . description=dust scaffold_159 . biological_region 5148 5151 0.999 + . logic_name=eponine scaffold_159 . biological_region 5161 5165 0.999 + . logic_name=eponine scaffold_159 . biological_region 5178 5185 0.999 + . logic_name=eponine scaffold_159 . biological_region 5246 5252 0.999 - . logic_name=eponine scaffold_159 . biological_region 5591 5602 0.999 + . logic_name=eponine scaffold_159 . biological_region 6862 6863 0.999 + . logic_name=eponine scaffold_159 . biological_region 6927 6930 0.999 + . logic_name=eponine scaffold_159 . biological_region 6944 6951 0.999 + . logic_name=eponine scaffold_159 . biological_region 7304 7306 0.999 + . logic_name=eponine scaffold_159 . biological_region 7367 7372 0.999 + . logic_name=eponine scaffold_159 . biological_region 7385 7386 0.999 + . logic_name=eponine scaffold_159 . biological_region 7420 7425 0.999 - . logic_name=eponine scaffold_159 . biological_region 7478 7479 0.999 + . logic_name=eponine scaffold_159 . biological_region 7530 7532 0.999 + . logic_name=eponine scaffold_159 . biological_region 7556 7557 0.999 + . logic_name=eponine scaffold_159 . biological_region 8687 8690 0.999 - . logic_name=eponine scaffold_159 . biological_region 8743 8747 0.999 + . logic_name=eponine scaffold_159 . biological_region 9089 9090 0.999 - . logic_name=eponine scaffold_159 . biological_region 9114 9116 0.999 - . logic_name=eponine scaffold_159 . biological_region 9167 9168 0.999 - . logic_name=eponine scaffold_159 . biological_region 9221 9226 0.999 + . logic_name=eponine scaffold_159 . biological_region 9260 9261 0.999 - . logic_name=eponine scaffold_159 . biological_region 9274 9279 0.999 - . logic_name=eponine scaffold_159 . biological_region 9340 9342 0.999 - . logic_name=eponine scaffold_159 ensembl protein_coding_gene 1 3686 . + . ID=Physo143926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590001;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 1 3686 . + . ID=Physo143926;Parent=Physo143926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . exon 1 2627 . + . ID=Physo143926.1;Parent=Physo143926;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_159 . CDS 583 2627 . + 0 ID=Physo143926;Parent=Physo143926;rank=1 scaffold_159 . CDS 2980 3589 . + 0 ID=Physo143926;Parent=Physo143926;rank=2 scaffold_159 . exon 2980 3686 . + . ID=Physo143926.2;Parent=Physo143926;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_159 ensembl protein_coding_gene 3876 6104 . - . ID=Physo143927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590002;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 3876 6104 . - . ID=Physo143927;Parent=Physo143927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 3876 4123 . - 0 ID=Physo143927;Parent=Physo143927;rank=10 scaffold_159 . exon 3876 4123 . - . ID=Physo143927.10;Parent=Physo143927;constitutive=1;ensembl_phase=1;rank=10 scaffold_159 . CDS 4190 4348 . - 0 ID=Physo143927;Parent=Physo143927;rank=9 scaffold_159 . exon 4190 4348 . - . ID=Physo143927.9;Parent=Physo143927;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_159 . CDS 4595 4748 . - 0 ID=Physo143927;Parent=Physo143927;rank=8 scaffold_159 . exon 4595 4748 . - . ID=Physo143927.8;Parent=Physo143927;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_159 . CDS 4849 4995 . - 0 ID=Physo143927;Parent=Physo143927;rank=7 scaffold_159 . exon 4849 4995 . - . ID=Physo143927.7;Parent=Physo143927;constitutive=1;rank=7 scaffold_159 . CDS 5079 5305 . - 0 ID=Physo143927;Parent=Physo143927;rank=6 scaffold_159 . exon 5079 5305 . - . ID=Physo143927.6;Parent=Physo143927;constitutive=1;ensembl_phase=1;rank=6 scaffold_159 . CDS 5410 5477 . - 0 ID=Physo143927;Parent=Physo143927;rank=5 scaffold_159 . exon 5410 5477 . - . ID=Physo143927.5;Parent=Physo143927;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_159 . CDS 5565 5734 . - 0 ID=Physo143927;Parent=Physo143927;rank=4 scaffold_159 . exon 5565 5734 . - . ID=Physo143927.4;Parent=Physo143927;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_159 . CDS 5810 5836 . - 0 ID=Physo143927;Parent=Physo143927;rank=3 scaffold_159 . exon 5810 5836 . - . ID=Physo143927.3;Parent=Physo143927;constitutive=1;rank=3 scaffold_159 . CDS 5928 5979 . - 0 ID=Physo143927;Parent=Physo143927;rank=2 scaffold_159 . exon 5928 5979 . - . ID=Physo143927.2;Parent=Physo143927;constitutive=1;ensembl_phase=2;rank=2 scaffold_159 . CDS 6067 6104 . - 0 ID=Physo143927;Parent=Physo143927;rank=1 scaffold_159 . exon 6067 6104 . - . ID=Physo143927.1;Parent=Physo143927;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_159 ensembl protein_coding_gene 6919 7727 . - . ID=Physo158834;biotype=protein_coding;external_name=C_scaffold_159000001;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 6919 7727 . - . ID=Physo158834;Parent=Physo158834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 6919 7727 . - 0 ID=Physo158834;Parent=Physo158834;rank=1 scaffold_159 . exon 6919 7727 . - . ID=Physo158834.1;Parent=Physo158834;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_159 ensembl protein_coding_gene 8918 11088 . + . ID=Physo158835;biotype=protein_coding;external_name=C_scaffold_159000002;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 8918 11088 . + . ID=Physo158835;Parent=Physo158835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 8918 9804 . + 0 ID=Physo158835;Parent=Physo158835;rank=1 scaffold_159 . exon 8918 9804 . + . ID=Physo158835.1;Parent=Physo158835;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_159 . CDS 10111 10234 . + 0 ID=Physo158835;Parent=Physo158835;rank=2 scaffold_159 . CDS 10301 10554 . + 0 ID=Physo158835;Parent=Physo158835;rank=3 scaffold_159 . CDS 10624 10827 . + 0 ID=Physo158835;Parent=Physo158835;rank=4 scaffold_159 . CDS 10899 11088 . + 0 ID=Physo158835;Parent=Physo158835;rank=5 scaffold_159 ensembl protein_coding_gene 11101 13162 . - . ID=Physo143930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590005;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 11101 13162 . - . ID=Physo143930;Parent=Physo143930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . exon 11101 11295 . - . ID=Physo143930.2;Parent=Physo143930;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_159 . CDS 11195 11295 . - 0 ID=Physo143930;Parent=Physo143930;rank=2 scaffold_159 . CDS 11377 13162 . - 0 ID=Physo143930;Parent=Physo143930;rank=1 scaffold_159 . exon 11377 13162 . - . ID=Physo143930.1;Parent=Physo143930;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_159 ensembl protein_coding_gene 15641 17234 . + . ID=Physo143931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590006;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 15641 17234 . + . ID=Physo143931;Parent=Physo143931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 15641 16763 . + 0 ID=Physo143931;Parent=Physo143931;rank=1 scaffold_159 . exon 15641 16763 . + . ID=Physo143931.1;Parent=Physo143931;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_159 . CDS 16849 16970 . + 0 ID=Physo143931;Parent=Physo143931;rank=2 scaffold_159 . exon 16849 16970 . + . ID=Physo143931.2;Parent=Physo143931;constitutive=1;ensembl_phase=1;rank=2 scaffold_159 . CDS 17044 17114 . + 0 ID=Physo143931;Parent=Physo143931;rank=3 scaffold_159 . exon 17044 17114 . + . ID=Physo143931.3;Parent=Physo143931;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_159 . CDS 17183 17234 . + 0 ID=Physo143931;Parent=Physo143931;rank=4 scaffold_159 . exon 17183 17234 . + . ID=Physo143931.4;Parent=Physo143931;constitutive=1;ensembl_phase=2;rank=4 scaffold_159 . exon 10111 10234 . + . ID=Physo158835.2;Parent=Physo158835;constitutive=1;ensembl_phase=2;rank=2 scaffold_159 . exon 10301 10554 . + . ID=Physo158835.3;Parent=Physo158835;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_159 . exon 10624 10827 . + . ID=Physo158835.4;Parent=Physo158835;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_159 . exon 10899 11088 . + . ID=Physo158835.5;Parent=Physo158835;constitutive=1;ensembl_phase=2;rank=5 scaffold_159 ensembl protein_coding_gene 18849 24646 . + . ID=Physo158839;biotype=protein_coding;external_name=C_scaffold_159000006;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 18849 24646 . + . ID=Physo158839;Parent=Physo158839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . exon 18849 18912 . + . ID=Physo158839.1;Parent=Physo158839;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_159 . CDS 18851 18912 . + 0 ID=Physo158839;Parent=Physo158839;rank=1 scaffold_159 . CDS 18952 19116 . + 0 ID=Physo158839;Parent=Physo158839;rank=2 scaffold_159 . exon 18952 19116 . + . ID=Physo158839.2;Parent=Physo158839;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_159 . CDS 19162 19502 . + 0 ID=Physo158839;Parent=Physo158839;rank=3 scaffold_159 . CDS 19660 20269 . + 0 ID=Physo158839;Parent=Physo158839;rank=4 scaffold_159 . CDS 20340 20343 . + 0 ID=Physo158839;Parent=Physo158839;rank=5 scaffold_159 . CDS 20696 21304 . + 0 ID=Physo158839;Parent=Physo158839;rank=6 scaffold_159 . CDS 21347 21531 . + 0 ID=Physo158839;Parent=Physo158839;rank=7 scaffold_159 . CDS 21603 21824 . + 0 ID=Physo158839;Parent=Physo158839;rank=8 scaffold_159 . CDS 21867 21941 . + 0 ID=Physo158839;Parent=Physo158839;rank=9 scaffold_159 . CDS 22010 22151 . + 0 ID=Physo158839;Parent=Physo158839;rank=10 scaffold_159 . CDS 22275 22440 . + 0 ID=Physo158839;Parent=Physo158839;rank=11 scaffold_159 . CDS 22501 22725 . + 0 ID=Physo158839;Parent=Physo158839;rank=12 scaffold_159 . CDS 22777 23036 . + 0 ID=Physo158839;Parent=Physo158839;rank=13 scaffold_159 . CDS 23076 23208 . + 0 ID=Physo158839;Parent=Physo158839;rank=14 scaffold_159 . CDS 23536 24198 . + 0 ID=Physo158839;Parent=Physo158839;rank=15 scaffold_159 . CDS 24316 24559 . + 0 ID=Physo158839;Parent=Physo158839;rank=16 scaffold_159 . CDS 24595 24646 . + 0 ID=Physo158839;Parent=Physo158839;rank=17 scaffold_159 . biological_region 19041 19046 0.999 - . logic_name=eponine scaffold_159 . biological_region 19048 19055 0.999 + . logic_name=eponine scaffold_159 . biological_region 19062 19067 0.999 - . logic_name=eponine scaffold_159 . biological_region 19095 19103 0.999 - . logic_name=eponine scaffold_159 . biological_region 19125 19133 0.999 - . logic_name=eponine scaffold_159 . biological_region 19153 19157 0.999 + . logic_name=eponine scaffold_159 . biological_region 19302 19305 0.999 + . logic_name=eponine scaffold_159 . biological_region 19798 19799 0.999 - . logic_name=eponine scaffold_159 . biological_region 19929 19933 0.999 + . logic_name=eponine scaffold_159 . repeat_region 20166 20201 . ? . description=trf scaffold_159 . repeat_region 20336 20360 . ? . description=trf scaffold_159 . repeat_region 20493 20524 . ? . description=trf scaffold_159 . biological_region 20697 20700 0.999 + . logic_name=eponine scaffold_159 . biological_region 20722 20725 0.999 + . logic_name=eponine scaffold_159 . biological_region 20749 20750 0.999 - . logic_name=eponine scaffold_159 . repeat_region 22416 22439 . ? . description=trf scaffold_159 . repeat_region 23547 24200 . ? . description=trf scaffold_159 . biological_region 24376 24379 0.999 - . logic_name=eponine scaffold_159 . biological_region 24458 24460 0.999 + . logic_name=eponine scaffold_159 . repeat_region 26209 26221 . ? . description=dust scaffold_159 . repeat_region 28262 28278 . ? . description=dust scaffold_159 ensembl protein_coding_gene 24851 25711 . - . ID=Physo143934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590009;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 24851 25711 . - . ID=Physo143934;Parent=Physo143934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 24851 25711 . - 0 ID=Physo143934;Parent=Physo143934;rank=1 scaffold_159 . exon 24851 25711 . - . ID=Physo143934.1;Parent=Physo143934;constitutive=1;rank=1 scaffold_159 ensembl protein_coding_gene 26625 27775 . - . ID=Physo143935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590010;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 26625 27775 . - . ID=Physo143935;Parent=Physo143935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . exon 26625 27775 . - . ID=Physo143935.1;Parent=Physo143935;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_159 . CDS 26789 27775 . - 0 ID=Physo143935;Parent=Physo143935;rank=1 scaffold_159 . exon 19162 19502 . + . ID=Physo158839.3;Parent=Physo158839;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_159 . exon 19660 20269 . + . ID=Physo158839.4;Parent=Physo158839;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_159 . exon 20340 20343 . + . ID=Physo158839.5;Parent=Physo158839;constitutive=1;ensembl_phase=2;rank=5 scaffold_159 . exon 20696 21304 . + . ID=Physo158839.6;Parent=Physo158839;constitutive=1;rank=6 scaffold_159 . exon 21347 21531 . + . ID=Physo158839.7;Parent=Physo158839;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_159 . exon 21603 21824 . + . ID=Physo158839.8;Parent=Physo158839;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_159 . exon 21867 21941 . + . ID=Physo158839.9;Parent=Physo158839;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_159 . exon 22010 22151 . + . ID=Physo158839.10;Parent=Physo158839;constitutive=1;ensembl_phase=2;rank=10 scaffold_159 . exon 22275 22440 . + . ID=Physo158839.11;Parent=Physo158839;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_159 . exon 22501 22725 . + . ID=Physo158839.12;Parent=Physo158839;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_159 . exon 22777 23036 . + . ID=Physo158839.13;Parent=Physo158839;constitutive=1;ensembl_phase=1;rank=13 scaffold_159 . exon 23076 23208 . + . ID=Physo158839.14;Parent=Physo158839;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_159 . exon 23536 24198 . + . ID=Physo158839.15;Parent=Physo158839;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_159 . exon 24316 24559 . + . ID=Physo158839.16;Parent=Physo158839;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=16 scaffold_159 . exon 24595 24646 . + . ID=Physo158839.17;Parent=Physo158839;constitutive=1;ensembl_phase=2;rank=17 scaffold_159 ensembl protein_coding_gene 28598 30401 . + . ID=Physo143936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590011;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 28598 30401 . + . ID=Physo143936;Parent=Physo143936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 28598 30295 . + 0 ID=Physo143936;Parent=Physo143936;rank=1 scaffold_159 . exon 28598 30295 . + . ID=Physo143936.1;Parent=Physo143936;constitutive=1;rank=1 scaffold_159 . CDS 30345 30401 . + 0 ID=Physo143936;Parent=Physo143936;rank=2 scaffold_159 . exon 30345 30401 . + . ID=Physo143936.2;Parent=Physo143936;constitutive=1;rank=2 scaffold_159 ensembl protein_coding_gene 34118 34567 . + . ID=Physo143937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590012;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 34118 34567 . + . ID=Physo143937;Parent=Physo143937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 34118 34567 . + 0 ID=Physo143937;Parent=Physo143937;rank=1 scaffold_159 . exon 34118 34567 . + . ID=Physo143937.1;Parent=Physo143937;constitutive=1;rank=1 scaffold_159 ensembl protein_coding_gene 34659 37669 . - . ID=Physo143938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590013;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 34659 37669 . - . ID=Physo143938;Parent=Physo143938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 34659 35845 . - 0 ID=Physo143938;Parent=Physo143938;rank=4 scaffold_159 . exon 34659 35845 . - . ID=Physo143938.4;Parent=Physo143938;constitutive=1;ensembl_phase=1;rank=4 scaffold_159 . CDS 36362 37193 . - 0 ID=Physo143938;Parent=Physo143938;rank=3 scaffold_159 . exon 36362 37193 . - . ID=Physo143938.3;Parent=Physo143938;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_159 . CDS 37338 37456 . - 0 ID=Physo143938;Parent=Physo143938;rank=2 scaffold_159 . exon 37338 37456 . - . ID=Physo143938.2;Parent=Physo143938;constitutive=1;ensembl_phase=1;rank=2 scaffold_159 . CDS 37648 37669 . - 0 ID=Physo143938;Parent=Physo143938;rank=1 scaffold_159 . exon 37648 37669 . - . ID=Physo143938.1;Parent=Physo143938;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_159 . biological_region 39108 39110 0.999 + . logic_name=eponine scaffold_159 . biological_region 39133 39138 0.999 - . logic_name=eponine scaffold_159 . biological_region 40176 40179 0.999 - . logic_name=eponine scaffold_159 . biological_region 40258 40263 0.999 - . logic_name=eponine scaffold_159 . biological_region 40525 40526 0.999 + . logic_name=eponine scaffold_159 . biological_region 41414 41418 0.999 - . logic_name=eponine scaffold_159 . biological_region 41431 41434 0.999 - . logic_name=eponine scaffold_159 . repeat_region 41671 41697 . ? . description=dust scaffold_159 . repeat_region 41671 41697 . ? . description=trf scaffold_159 . biological_region 42031 42032 0.999 + . logic_name=eponine scaffold_159 . biological_region 42146 42151 0.999 + . logic_name=eponine scaffold_159 . biological_region 43344 43347 0.999 - . logic_name=eponine scaffold_159 . biological_region 44553 44557 0.999 - . logic_name=eponine scaffold_159 . repeat_region 44716 44759 . ? . description=dust scaffold_159 . biological_region 45066 45071 0.999 + . logic_name=eponine scaffold_159 . biological_region 45084 45086 0.999 - . logic_name=eponine scaffold_159 . biological_region 45101 45105 0.999 + . logic_name=eponine scaffold_159 . biological_region 45119 45127 0.999 - . logic_name=eponine scaffold_159 . repeat_region 45155 45193 . ? . description=dust scaffold_159 . biological_region 45179 45180 0.999 + . logic_name=eponine scaffold_159 . biological_region 45202 45206 0.999 - . logic_name=eponine scaffold_159 . repeat_region 45347 45373 . ? . description=trf scaffold_159 . biological_region 45505 45509 0.999 - . logic_name=eponine scaffold_159 . biological_region 45738 45740 0.999 + . logic_name=eponine scaffold_159 . biological_region 46071 46074 0.999 - . logic_name=eponine scaffold_159 ensembl protein_coding_gene 41781 42479 . + . ID=Physo143939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590014;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 41781 42479 . + . ID=Physo143939;Parent=Physo143939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 41781 42479 . + 0 ID=Physo143939;Parent=Physo143939;rank=1 scaffold_159 . exon 41781 42479 . + . ID=Physo143939.1;Parent=Physo143939;constitutive=1;rank=1 scaffold_159 ensembl protein_coding_gene 44947 49854 . + . ID=Physo143940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590015;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 44947 49854 . + . ID=Physo143940;Parent=Physo143940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 44947 46762 . + 0 ID=Physo143940;Parent=Physo143940;rank=1 scaffold_159 . exon 44947 46762 . + . ID=Physo143940.1;Parent=Physo143940;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_159 . CDS 46790 49344 . + 0 ID=Physo143940;Parent=Physo143940;rank=2 scaffold_159 . exon 46790 49344 . + . ID=Physo143940.2;Parent=Physo143940;constitutive=1;ensembl_phase=1;rank=2 scaffold_159 . CDS 49422 49715 . + 0 ID=Physo143940;Parent=Physo143940;rank=3 scaffold_159 . exon 49422 49854 . + . ID=Physo143940.3;Parent=Physo143940;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_159 ensembl protein_coding_gene 50036 54326 . - . ID=Physo158844;biotype=protein_coding;external_name=C_scaffold_159000011;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 50036 54326 . - . ID=Physo158844;Parent=Physo158844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 50036 50802 . - 0 ID=Physo158844;Parent=Physo158844;rank=13 scaffold_159 . exon 50036 50802 . - . ID=Physo158844.13;Parent=Physo158844;constitutive=1;ensembl_phase=1;rank=13 scaffold_159 . CDS 50851 51243 . - 0 ID=Physo158844;Parent=Physo158844;rank=12 scaffold_159 . exon 50851 51243 . - . ID=Physo158844.12;Parent=Physo158844;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_159 . CDS 51321 51582 . - 0 ID=Physo158844;Parent=Physo158844;rank=11 scaffold_159 . exon 51321 51582 . - . ID=Physo158844.11;Parent=Physo158844;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_159 . CDS 51613 52260 . - 0 ID=Physo158844;Parent=Physo158844;rank=10 scaffold_159 . exon 51613 52260 . - . ID=Physo158844.10;Parent=Physo158844;constitutive=1;rank=10 scaffold_159 . CDS 52402 52900 . - 0 ID=Physo158844;Parent=Physo158844;rank=9 scaffold_159 . exon 52402 52900 . - . ID=Physo158844.9;Parent=Physo158844;constitutive=1;ensembl_phase=2;rank=9 scaffold_159 . CDS 53156 53238 . - 0 ID=Physo158844;Parent=Physo158844;rank=8 scaffold_159 . exon 53156 53238 . - . ID=Physo158844.8;Parent=Physo158844;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_159 . CDS 53315 53402 . - 0 ID=Physo158844;Parent=Physo158844;rank=7 scaffold_159 . exon 53315 53402 . - . ID=Physo158844.7;Parent=Physo158844;constitutive=1;ensembl_phase=2;rank=7 scaffold_159 . CDS 53464 53513 . - 0 ID=Physo158844;Parent=Physo158844;rank=6 scaffold_159 . exon 53464 53513 . - . ID=Physo158844.6;Parent=Physo158844;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_159 . CDS 53575 53619 . - 0 ID=Physo158844;Parent=Physo158844;rank=5 scaffold_159 . exon 53575 53619 . - . ID=Physo158844.5;Parent=Physo158844;constitutive=1;rank=5 scaffold_159 . CDS 53698 53786 . - 0 ID=Physo158844;Parent=Physo158844;rank=4 scaffold_159 . exon 53698 53786 . - . ID=Physo158844.4;Parent=Physo158844;constitutive=1;ensembl_phase=1;rank=4 scaffold_159 . CDS 53868 53933 . - 0 ID=Physo158844;Parent=Physo158844;rank=3 scaffold_159 . exon 53868 53933 . - . ID=Physo158844.3;Parent=Physo158844;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_159 . CDS 54022 54112 . - 0 ID=Physo158844;Parent=Physo158844;rank=2 scaffold_159 . exon 54022 54112 . - . ID=Physo158844.2;Parent=Physo158844;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_159 . CDS 54207 54326 . - 0 ID=Physo158844;Parent=Physo158844;rank=1 scaffold_159 . exon 54207 54326 . - . ID=Physo158844.1;Parent=Physo158844;constitutive=1;rank=1 scaffold_159 . biological_region 58384 58384 0.999 + . logic_name=eponine scaffold_159 . biological_region 60155 60156 0.999 - . logic_name=eponine scaffold_159 . repeat_region 60763 60771 . ? . description=dust scaffold_159 . biological_region 60950 60951 0.999 - . logic_name=eponine scaffold_159 . biological_region 61586 61589 0.999 + . logic_name=eponine scaffold_159 . biological_region 62199 62203 0.999 - . logic_name=eponine scaffold_159 . biological_region 62231 62234 0.999 + . logic_name=eponine scaffold_159 . biological_region 62255 62255 0.999 + . logic_name=eponine scaffold_159 . biological_region 62589 62595 0.999 + . logic_name=eponine scaffold_159 . biological_region 63063 63067 0.999 + . logic_name=eponine scaffold_159 . biological_region 63097 63101 0.999 - . logic_name=eponine scaffold_159 . biological_region 63475 63477 0.999 - . logic_name=eponine scaffold_159 . biological_region 64747 64747 0.999 + . logic_name=eponine scaffold_159 . biological_region 65073 65076 0.999 + . logic_name=eponine scaffold_159 . biological_region 65185 65188 0.999 - . logic_name=eponine scaffold_159 . biological_region 65918 65922 0.999 - . logic_name=eponine scaffold_159 . biological_region 65994 65994 0.999 + . logic_name=eponine scaffold_159 . biological_region 66553 66556 0.999 + . logic_name=eponine scaffold_159 ensembl protein_coding_gene 60797 61578 . + . ID=Physo124444;biotype=protein_coding;external_name=estExt_Genewise1.C_1590023;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 60797 61578 . + . ID=Physo124444;Parent=Physo124444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . exon 60797 60918 . + . ID=Physo124444.1;Parent=Physo124444;constitutive=1;ensembl_phase=-1;rank=1 scaffold_159 . CDS 60799 60918 . + 0 ID=Physo124444;Parent=Physo124444;rank=1 scaffold_159 . CDS 60998 61423 . + 0 ID=Physo124444;Parent=Physo124444;rank=2 scaffold_159 . exon 60998 61578 . + . ID=Physo124444.2;Parent=Physo124444;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_159 ensembl protein_coding_gene 58026 59258 . + . ID=Physo143943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590018;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 58026 59258 . + . ID=Physo143943;Parent=Physo143943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 58026 59258 . + 0 ID=Physo143943;Parent=Physo143943;rank=1 scaffold_159 . exon 58026 59258 . + . ID=Physo143943.1;Parent=Physo143943;constitutive=1;rank=1 scaffold_159 ensembl protein_coding_gene 59411 60273 . - . ID=Physo143944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590019;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 59411 60273 . - . ID=Physo143944;Parent=Physo143944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 59411 59893 . - 0 ID=Physo143944;Parent=Physo143944;rank=3 scaffold_159 . exon 59411 59893 . - . ID=Physo143944.3;Parent=Physo143944;constitutive=1;rank=3 scaffold_159 . CDS 59965 60060 . - 0 ID=Physo143944;Parent=Physo143944;rank=2 scaffold_159 . exon 59965 60060 . - . ID=Physo143944.2;Parent=Physo143944;constitutive=1;rank=2 scaffold_159 . CDS 60100 60273 . - 0 ID=Physo143944;Parent=Physo143944;rank=1 scaffold_159 . exon 60100 60273 . - . ID=Physo143944.1;Parent=Physo143944;constitutive=1;rank=1 scaffold_159 ensembl protein_coding_gene 61766 62689 . - . ID=Physo143946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590021;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 61766 62689 . - . ID=Physo143946;Parent=Physo143946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 61766 62689 . - 0 ID=Physo143946;Parent=Physo143946;rank=1 scaffold_159 . exon 61766 62689 . - . ID=Physo143946.1;Parent=Physo143946;constitutive=1;rank=1 scaffold_159 ensembl protein_coding_gene 63289 64554 . - . ID=Physo143947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590022;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 63289 64554 . - . ID=Physo143947;Parent=Physo143947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 63289 64554 . - 0 ID=Physo143947;Parent=Physo143947;rank=1 scaffold_159 . exon 63289 64554 . - . ID=Physo143947.1;Parent=Physo143947;constitutive=1;rank=1 scaffold_159 ensembl protein_coding_gene 65688 66959 . - . ID=Physo143948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590023;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 65688 66959 . - . ID=Physo143948;Parent=Physo143948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 65688 66959 . - 0 ID=Physo143948;Parent=Physo143948;rank=1 scaffold_159 . exon 65688 66959 . - . ID=Physo143948.1;Parent=Physo143948;constitutive=1;rank=1 scaffold_159 . repeat_region 75522 75547 . ? . description=trf scaffold_159 ensembl protein_coding_gene 67209 71213 . + . ID=Physo143949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590024;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 67209 71213 . + . ID=Physo143949;Parent=Physo143949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 67209 71213 . + 0 ID=Physo143949;Parent=Physo143949;rank=1 scaffold_159 . exon 67209 71213 . + . ID=Physo143949.1;Parent=Physo143949;constitutive=1;rank=1 scaffold_159 ensembl protein_coding_gene 71428 75066 . - . ID=Physo143950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590025;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 71428 75066 . - . ID=Physo143950;Parent=Physo143950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 71428 75066 . - 0 ID=Physo143950;Parent=Physo143950;rank=1 scaffold_159 . exon 71428 75066 . - . ID=Physo143950.1;Parent=Physo143950;constitutive=1;rank=1 scaffold_159 . repeat_region 76596 76604 . ? . description=dust scaffold_159 . repeat_region 78667 78676 . ? . description=dust scaffold_159 . repeat_region 79814 79995 . - . description=Polinton-1_PI scaffold_159 . repeat_region 80011 80081 . - . description=Polinton-1_PI scaffold_159 . repeat_region 80130 80418 . + . description=Polinton-1_PI scaffold_159 . repeat_region 80581 80617 . + . description=Polinton-1_PI scaffold_159 . repeat_region 81025 81679 . ? . description=dust scaffold_159 . repeat_region 81680 81839 . + . description=Polinton-1_PI scaffold_159 . repeat_region 81857 81904 . - . description=Polinton-1_PI scaffold_159 . repeat_region 81920 81990 . - . description=Polinton-1_PI scaffold_159 . repeat_region 82039 82336 . + . description=Polinton-1_PI scaffold_159 . repeat_region 83404 84305 . + . description=Polinton-1_PI scaffold_159 . repeat_region 83645 83652 . ? . description=dust scaffold_159 . repeat_region 84306 84355 . ? . description=dust scaffold_159 . repeat_region 84356 84874 . + . description=Polinton-1_PI scaffold_159 . repeat_region 84912 84919 . ? . description=dust scaffold_159 . repeat_region 85028 85333 . + . description=Polinton-1_PI scaffold_159 . repeat_region 85337 85386 . ? . description=dust scaffold_159 . repeat_region 85391 85593 . + . description=Polinton-1_PI scaffold_159 ensembl protein_coding_gene 76865 78410 . - . ID=Physo143951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590026;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 76865 78410 . - . ID=Physo143951;Parent=Physo143951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 76865 77089 . - 0 ID=Physo143951;Parent=Physo143951;rank=4 scaffold_159 . exon 76865 77089 . - . ID=Physo143951.4;Parent=Physo143951;constitutive=1;rank=4 scaffold_159 . CDS 77113 77235 . - 0 ID=Physo143951;Parent=Physo143951;rank=3 scaffold_159 . exon 77113 77235 . - . ID=Physo143951.3;Parent=Physo143951;constitutive=1;rank=3 scaffold_159 . CDS 77266 77986 . - 0 ID=Physo143951;Parent=Physo143951;rank=2 scaffold_159 . exon 77266 77986 . - . ID=Physo143951.2;Parent=Physo143951;constitutive=1;ensembl_phase=2;rank=2 scaffold_159 . CDS 78049 78410 . - 0 ID=Physo143951;Parent=Physo143951;rank=1 scaffold_159 . exon 78049 78410 . - . ID=Physo143951.1;Parent=Physo143951;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_159 ensembl protein_coding_gene 80247 81817 . + . ID=Physo143952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590027;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 80247 81817 . + . ID=Physo143952;Parent=Physo143952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . exon 80247 80815 . + . ID=Physo143952.1;Parent=Physo143952;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_159 . CDS 80263 80815 . + 0 ID=Physo143952;Parent=Physo143952;rank=1 scaffold_159 . CDS 80888 81012 . + 0 ID=Physo143952;Parent=Physo143952;rank=2 scaffold_159 . exon 80888 81012 . + . ID=Physo143952.2;Parent=Physo143952;constitutive=1;ensembl_phase=1;rank=2 scaffold_159 . CDS 81680 81685 . + 0 ID=Physo143952;Parent=Physo143952;rank=3 scaffold_159 . exon 81680 81720 . + . ID=Physo143952.3;Parent=Physo143952;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_159 . exon 81813 81817 . + . ID=Physo143952.4;Parent=Physo143952;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_159 ensembl pseudogene 82156 83224 . + . ID=Physo143953;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_1590028;logic_name=jgi_physo1_1 scaffold_159 ensembl pseudogene 82156 83224 . + . ID=Physo143953;Parent=Physo143953;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_159 . exon 82156 83224 . + . ID=Physo143953.1;Parent=Physo143953;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_159 ensembl protein_coding_gene 85429 86897 . + . ID=Physo143954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590029;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 85429 86897 . + . ID=Physo143954;Parent=Physo143954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 85429 85537 . + 0 ID=Physo143954;Parent=Physo143954;rank=1 scaffold_159 . exon 85429 85537 . + . ID=Physo143954.1;Parent=Physo143954;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_159 . CDS 85801 86897 . + 0 ID=Physo143954;Parent=Physo143954;rank=2 scaffold_159 . exon 85801 86897 . + . ID=Physo143954.2;Parent=Physo143954;constitutive=1;ensembl_phase=1;rank=2 scaffold_159 . repeat_region 86913 102597 . ? . description=dust scaffold_159 . repeat_region 102825 102855 . ? . description=trf scaffold_159 . biological_region 103175 103177 0.999 - . logic_name=eponine scaffold_159 . repeat_region 104358 108659 . ? . description=dust scaffold_159 ensembl protein_coding_gene 102831 103353 . + . ID=Physo143955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1590030;logic_name=jgi_physo1_1 scaffold_159 ensembl transcript 102831 103353 . + . ID=Physo143955;Parent=Physo143955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_159 . CDS 102831 103193 . + 0 ID=Physo143955;Parent=Physo143955;rank=1 scaffold_159 . exon 102831 103193 . + . ID=Physo143955.1;Parent=Physo143955;constitutive=1;rank=1 scaffold_159 . CDS 103276 103353 . + 0 ID=Physo143955;Parent=Physo143955;rank=2 scaffold_159 . exon 103276 103353 . + . ID=Physo143955.2;Parent=Physo143955;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_156 1 115537 scaffold_156 . repeat_region 36 43 . ? . description=dust scaffold_156 . biological_region 1708 1711 0.999 - . logic_name=eponine scaffold_156 . repeat_region 2640 6259 . ? . description=dust scaffold_156 . repeat_region 18403 27562 . ? . description=dust scaffold_156 . biological_region 28086 28091 0.999 - . logic_name=eponine scaffold_156 . repeat_region 28496 28885 . ? . description=dust scaffold_156 . repeat_region 28886 32907 . ? . description=dust scaffold_156 . repeat_region 34948 34971 . ? . description=trf scaffold_156 . repeat_region 34980 35019 . ? . description=trf scaffold_156 . repeat_region 34980 35027 . ? . description=trf scaffold_156 . repeat_region 38311 38334 . ? . description=trf scaffold_156 . repeat_region 38343 38396 . ? . description=trf scaffold_156 . repeat_region 38343 38404 . ? . description=trf scaffold_156 ensembl protein_coding_gene 33726 35429 . - . ID=Physo143879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560001;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 33726 35429 . - . ID=Physo143879;Parent=Physo143879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 33726 33790 . - 0 ID=Physo143879;Parent=Physo143879;rank=3 scaffold_156 . exon 33726 33790 . - . ID=Physo143879.3;Parent=Physo143879;constitutive=1;ensembl_phase=1;rank=3 scaffold_156 . CDS 34159 34633 . - 0 ID=Physo143879;Parent=Physo143879;rank=2 scaffold_156 . exon 34159 34633 . - . ID=Physo143879.2;Parent=Physo143879;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_156 . CDS 35130 35429 . - 0 ID=Physo143879;Parent=Physo143879;rank=1 scaffold_156 . exon 35130 35429 . - . ID=Physo143879.1;Parent=Physo143879;constitutive=1;rank=1 scaffold_156 . repeat_region 38449 39391 . ? . description=dust scaffold_156 . biological_region 39435 39438 0.999 + . logic_name=eponine scaffold_156 . repeat_region 40891 40902 . ? . description=dust scaffold_156 . repeat_region 41400 41408 . ? . description=dust scaffold_156 . repeat_region 43727 43785 . ? . description=dust scaffold_156 . repeat_region 46442 46449 . ? . description=dust scaffold_156 . biological_region 47813 47814 0.999 - . logic_name=eponine scaffold_156 ensembl protein_coding_gene 47489 48043 . + . ID=Physo143880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560002;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 47489 48043 . + . ID=Physo143880;Parent=Physo143880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 47489 47669 . + 0 ID=Physo143880;Parent=Physo143880;rank=1 scaffold_156 . exon 47489 47669 . + . ID=Physo143880.1;Parent=Physo143880;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 . CDS 47721 48043 . + 0 ID=Physo143880;Parent=Physo143880;rank=2 scaffold_156 . exon 47721 48043 . + . ID=Physo143880.2;Parent=Physo143880;constitutive=1;ensembl_phase=1;rank=2 scaffold_156 ensembl protein_coding_gene 48598 49721 . - . ID=Physo143881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560003;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 48598 49721 . - . ID=Physo143881;Parent=Physo143881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 48598 48954 . - 0 ID=Physo143881;Parent=Physo143881;rank=6 scaffold_156 . exon 48598 48954 . - . ID=Physo143881.6;Parent=Physo143881;constitutive=1;rank=6 scaffold_156 . CDS 49079 49120 . - 0 ID=Physo143881;Parent=Physo143881;rank=5 scaffold_156 . exon 49079 49120 . - . ID=Physo143881.5;Parent=Physo143881;constitutive=1;rank=5 scaffold_156 . CDS 49141 49254 . - 0 ID=Physo143881;Parent=Physo143881;rank=4 scaffold_156 . exon 49141 49254 . - . ID=Physo143881.4;Parent=Physo143881;constitutive=1;rank=4 scaffold_156 . CDS 49292 49367 . - 0 ID=Physo143881;Parent=Physo143881;rank=3 scaffold_156 . exon 49292 49367 . - . ID=Physo143881.3;Parent=Physo143881;constitutive=1;ensembl_phase=2;rank=3 scaffold_156 . CDS 49550 49617 . - 0 ID=Physo143881;Parent=Physo143881;rank=2 scaffold_156 . exon 49550 49617 . - . ID=Physo143881.2;Parent=Physo143881;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_156 . CDS 49698 49721 . - 0 ID=Physo143881;Parent=Physo143881;rank=1 scaffold_156 . exon 49698 49721 . - . ID=Physo143881.1;Parent=Physo143881;constitutive=1;rank=1 scaffold_156 ensembl protein_coding_gene 51080 51727 . + . ID=Physo143882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560004;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 51080 51727 . + . ID=Physo143882;Parent=Physo143882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . exon 51080 51194 . + . ID=Physo143882.1;Parent=Physo143882;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_156 . CDS 51125 51194 . + 0 ID=Physo143882;Parent=Physo143882;rank=1 scaffold_156 . CDS 51224 51468 . + 0 ID=Physo143882;Parent=Physo143882;rank=2 scaffold_156 . exon 51224 51468 . + . ID=Physo143882.2;Parent=Physo143882;constitutive=1;ensembl_phase=1;rank=2 scaffold_156 . CDS 51545 51727 . + 0 ID=Physo143882;Parent=Physo143882;rank=3 scaffold_156 . exon 51545 51727 . + . ID=Physo143882.3;Parent=Physo143882;constitutive=1;rank=3 scaffold_156 ensembl protein_coding_gene 55029 58036 . - . ID=Physo143883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560005;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 55029 58036 . - . ID=Physo143883;Parent=Physo143883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 55029 56120 . - 0 ID=Physo143883;Parent=Physo143883;rank=7 scaffold_156 . exon 55029 56120 . - . ID=Physo143883.7;Parent=Physo143883;constitutive=1;rank=7 scaffold_156 . CDS 56330 56605 . - 0 ID=Physo143883;Parent=Physo143883;rank=6 scaffold_156 . exon 56330 56605 . - . ID=Physo143883.6;Parent=Physo143883;constitutive=1;rank=6 scaffold_156 . CDS 56848 57003 . - 0 ID=Physo143883;Parent=Physo143883;rank=5 scaffold_156 . exon 56848 57003 . - . ID=Physo143883.5;Parent=Physo143883;constitutive=1;rank=5 scaffold_156 . CDS 57102 57108 . - 0 ID=Physo143883;Parent=Physo143883;rank=4 scaffold_156 . exon 57102 57108 . - . ID=Physo143883.4;Parent=Physo143883;constitutive=1;ensembl_phase=2;rank=4 scaffold_156 . CDS 57145 57390 . - 0 ID=Physo143883;Parent=Physo143883;rank=3 scaffold_156 . exon 57145 57390 . - . ID=Physo143883.3;Parent=Physo143883;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_156 . CDS 57469 57708 . - 0 ID=Physo143883;Parent=Physo143883;rank=2 scaffold_156 . exon 57469 57708 . - . ID=Physo143883.2;Parent=Physo143883;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_156 . CDS 57762 58036 . - 0 ID=Physo143883;Parent=Physo143883;rank=1 scaffold_156 . exon 57762 58036 . - . ID=Physo143883.1;Parent=Physo143883;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_156 . biological_region 57862 57864 0.999 - . logic_name=eponine scaffold_156 . biological_region 58259 58259 0.999 + . logic_name=eponine scaffold_156 . biological_region 58419 58420 0.999 + . logic_name=eponine scaffold_156 . biological_region 58512 58514 0.999 + . logic_name=eponine scaffold_156 . repeat_region 59833 59840 . ? . description=dust scaffold_156 . biological_region 61780 61784 0.999 - . logic_name=eponine scaffold_156 . biological_region 61837 61841 0.999 - . logic_name=eponine scaffold_156 . biological_region 63041 63046 0.999 + . logic_name=eponine scaffold_156 . biological_region 63145 63147 0.999 - . logic_name=eponine scaffold_156 . biological_region 66231 66236 0.999 - . logic_name=eponine scaffold_156 . biological_region 66285 66292 0.999 + . logic_name=eponine scaffold_156 ensembl protein_coding_gene 60566 60769 . - . ID=Physo124358;biotype=protein_coding;external_name=estExt_Genewise1.C_1560010;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 60566 60769 . - . ID=Physo124358;Parent=Physo124358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 60566 60718 . - 0 ID=Physo124358;Parent=Physo124358;rank=1 scaffold_156 . exon 60566 60769 . - . ID=Physo124358.1;Parent=Physo124358;constitutive=1;ensembl_phase=-1;rank=1 scaffold_156 ensembl protein_coding_gene 58454 60470 . + . ID=Physo143884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560006;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 58454 60470 . + . ID=Physo143884;Parent=Physo143884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 58454 59242 . + 0 ID=Physo143884;Parent=Physo143884;rank=1 scaffold_156 . exon 58454 59242 . + . ID=Physo143884.1;Parent=Physo143884;constitutive=1;rank=1 scaffold_156 . CDS 59338 59481 . + 0 ID=Physo143884;Parent=Physo143884;rank=2 scaffold_156 . exon 59338 59481 . + . ID=Physo143884.2;Parent=Physo143884;constitutive=1;rank=2 scaffold_156 . CDS 59558 59750 . + 0 ID=Physo143884;Parent=Physo143884;rank=3 scaffold_156 . exon 59558 59750 . + . ID=Physo143884.3;Parent=Physo143884;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_156 . CDS 60286 60470 . + 0 ID=Physo143884;Parent=Physo143884;rank=4 scaffold_156 . exon 60286 60470 . + . ID=Physo143884.4;Parent=Physo143884;constitutive=1;ensembl_phase=1;rank=4 scaffold_156 ensembl protein_coding_gene 61349 63725 . + . ID=Physo143885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560007;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 61349 63725 . + . ID=Physo143885;Parent=Physo143885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 61349 61448 . + 0 ID=Physo143885;Parent=Physo143885;rank=1 scaffold_156 . exon 61349 61448 . + . ID=Physo143885.1;Parent=Physo143885;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 . CDS 61490 62186 . + 0 ID=Physo143885;Parent=Physo143885;rank=2 scaffold_156 . exon 61490 62186 . + . ID=Physo143885.2;Parent=Physo143885;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_156 . CDS 62213 63114 . + 0 ID=Physo143885;Parent=Physo143885;rank=3 scaffold_156 . exon 62213 63114 . + . ID=Physo143885.3;Parent=Physo143885;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_156 . CDS 63331 63725 . + 0 ID=Physo143885;Parent=Physo143885;rank=4 scaffold_156 . exon 63331 63725 . + . ID=Physo143885.4;Parent=Physo143885;constitutive=1;ensembl_phase=1;rank=4 scaffold_156 . repeat_region 68012 68037 . ? . description=trf scaffold_156 . repeat_region 71816 71844 . ? . description=trf scaffold_156 . repeat_region 74064 74091 . ? . description=trf scaffold_156 . repeat_region 75918 75970 . ? . description=trf scaffold_156 . repeat_region 75918 75970 . ? . description=trf scaffold_156 ensembl protein_coding_gene 68612 69474 . - . ID=Physo143886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560008;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 68612 69474 . - . ID=Physo143886;Parent=Physo143886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 68612 69340 . - 0 ID=Physo143886;Parent=Physo143886;rank=2 scaffold_156 . exon 68612 69340 . - . ID=Physo143886.2;Parent=Physo143886;constitutive=1;rank=2 scaffold_156 . CDS 69409 69474 . - 0 ID=Physo143886;Parent=Physo143886;rank=1 scaffold_156 . exon 69409 69474 . - . ID=Physo143886.1;Parent=Physo143886;constitutive=1;rank=1 scaffold_156 . repeat_region 78799 78938 . + . description=Polinton-1_PI scaffold_156 . biological_region 82489 82496 0.999 - . logic_name=eponine scaffold_156 . biological_region 82545 82549 0.999 + . logic_name=eponine scaffold_156 ensembl protein_coding_gene 79207 83025 . + . ID=Physo143887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560009;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 79207 83025 . + . ID=Physo143887;Parent=Physo143887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . exon 79207 79651 . + . ID=Physo143887.1;Parent=Physo143887;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_156 . CDS 79294 79651 . + 0 ID=Physo143887;Parent=Physo143887;rank=1 scaffold_156 . CDS 79940 79943 . + 0 ID=Physo143887;Parent=Physo143887;rank=2 scaffold_156 . exon 79940 79943 . + . ID=Physo143887.2;Parent=Physo143887;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_156 . CDS 80163 80700 . + 0 ID=Physo143887;Parent=Physo143887;rank=3 scaffold_156 . exon 80163 80700 . + . ID=Physo143887.3;Parent=Physo143887;constitutive=1;ensembl_phase=2;rank=3 scaffold_156 . CDS 80727 81935 . + 0 ID=Physo143887;Parent=Physo143887;rank=4 scaffold_156 . exon 80727 81935 . + . ID=Physo143887.4;Parent=Physo143887;constitutive=1;rank=4 scaffold_156 . CDS 81961 83025 . + 0 ID=Physo143887;Parent=Physo143887;rank=5 scaffold_156 . exon 81961 83025 . + . ID=Physo143887.5;Parent=Physo143887;constitutive=1;rank=5 scaffold_156 . repeat_region 86805 86816 . ? . description=dust scaffold_156 . repeat_region 89030 89039 . ? . description=dust scaffold_156 . repeat_region 90399 90448 . ? . description=dust scaffold_156 . repeat_region 96106 97965 . ? . description=dust scaffold_156 ensembl protein_coding_gene 90488 91617 . + . ID=Physo143888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560010;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 90488 91617 . + . ID=Physo143888;Parent=Physo143888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 90488 90605 . + 0 ID=Physo143888;Parent=Physo143888;rank=1 scaffold_156 . exon 90488 90605 . + . ID=Physo143888.1;Parent=Physo143888;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_156 . CDS 90746 91617 . + 0 ID=Physo143888;Parent=Physo143888;rank=2 scaffold_156 . exon 90746 91617 . + . ID=Physo143888.2;Parent=Physo143888;constitutive=1;ensembl_phase=1;rank=2 scaffold_156 ensembl protein_coding_gene 91906 95412 . - . ID=Physo143889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560011;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 91906 95412 . - . ID=Physo143889;Parent=Physo143889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 91906 91965 . - 0 ID=Physo143889;Parent=Physo143889;rank=10 scaffold_156 . exon 91906 91965 . - . ID=Physo143889.10;Parent=Physo143889;constitutive=1;rank=10 scaffold_156 . CDS 91986 92102 . - 0 ID=Physo143889;Parent=Physo143889;rank=9 scaffold_156 . exon 91986 92102 . - . ID=Physo143889.9;Parent=Physo143889;constitutive=1;rank=9 scaffold_156 . CDS 92194 92415 . - 0 ID=Physo143889;Parent=Physo143889;rank=8 scaffold_156 . exon 92194 92415 . - . ID=Physo143889.8;Parent=Physo143889;constitutive=1;rank=8 scaffold_156 . CDS 92457 92702 . - 0 ID=Physo143889;Parent=Physo143889;rank=7 scaffold_156 . exon 92457 92702 . - . ID=Physo143889.7;Parent=Physo143889;constitutive=1;rank=7 scaffold_156 . CDS 92789 93037 . - 0 ID=Physo143889;Parent=Physo143889;rank=6 scaffold_156 . exon 92789 93037 . - . ID=Physo143889.6;Parent=Physo143889;constitutive=1;rank=6 scaffold_156 . CDS 93083 93165 . - 0 ID=Physo143889;Parent=Physo143889;rank=5 scaffold_156 . exon 93083 93165 . - . ID=Physo143889.5;Parent=Physo143889;constitutive=1;ensembl_phase=1;rank=5 scaffold_156 . CDS 93319 93495 . - 0 ID=Physo143889;Parent=Physo143889;rank=4 scaffold_156 . exon 93319 93495 . - . ID=Physo143889.4;Parent=Physo143889;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_156 . CDS 93543 93801 . - 0 ID=Physo143889;Parent=Physo143889;rank=3 scaffold_156 . exon 93543 93801 . - . ID=Physo143889.3;Parent=Physo143889;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_156 . CDS 94267 94500 . - 0 ID=Physo143889;Parent=Physo143889;rank=2 scaffold_156 . exon 94267 94500 . - . ID=Physo143889.2;Parent=Physo143889;constitutive=1;rank=2 scaffold_156 . CDS 94876 95412 . - 0 ID=Physo143889;Parent=Physo143889;rank=1 scaffold_156 . exon 94876 95412 . - . ID=Physo143889.1;Parent=Physo143889;constitutive=1;rank=1 scaffold_156 . repeat_region 97972 99461 . - . description=Polinton-1_PI scaffold_156 . repeat_region 99454 101974 . - . description=Polinton-1_PI scaffold_156 . repeat_region 104118 104410 . - . description=Polinton-1_PI scaffold_156 . repeat_region 105996 106004 . ? . description=dust scaffold_156 . repeat_region 112359 112367 . ? . description=dust scaffold_156 ensembl protein_coding_gene 112396 113667 . - . ID=Physo143890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1560012;logic_name=jgi_physo1_1 scaffold_156 ensembl transcript 112396 113667 . - . ID=Physo143890;Parent=Physo143890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_156 . CDS 112396 113652 . - 0 ID=Physo143890;Parent=Physo143890;rank=1 scaffold_156 . exon 112396 113667 . - . ID=Physo143890.1;Parent=Physo143890;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_155 1 116260 scaffold_155 . repeat_region 1294 1301 . ? . description=dust scaffold_155 . biological_region 2835 2841 0.999 + . logic_name=eponine scaffold_155 . biological_region 4735 4737 0.999 - . logic_name=eponine scaffold_155 . repeat_region 6963 6988 . ? . description=trf scaffold_155 . repeat_region 7908 7915 . ? . description=dust scaffold_155 . repeat_region 8017 8044 . ? . description=dust scaffold_155 . repeat_region 8932 10456 . ? . description=dust scaffold_155 ensembl pseudogene 2117 6297 . - . ID=Physo143861;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_1550001;logic_name=jgi_physo1_1 scaffold_155 ensembl pseudogene 2117 6297 . - . ID=Physo143861;Parent=Physo143861;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_155 . exon 2117 6297 . - . ID=Physo143861.1;Parent=Physo143861;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_155 ensembl protein_coding_gene 12184 13890 . - . ID=Physo124323;biotype=protein_coding;external_name=estExt_Genewise1.C_1550011;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 12184 13890 . - . ID=Physo124323;Parent=Physo124323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 12184 13212 . - 0 ID=Physo124323;Parent=Physo124323;rank=2 scaffold_155 . exon 12184 13212 . - . ID=Physo124323.2;Parent=Physo124323;constitutive=1;rank=2 scaffold_155 . CDS 13315 13743 . - 0 ID=Physo124323;Parent=Physo124323;rank=1 scaffold_155 . exon 13315 13890 . - . ID=Physo124323.1;Parent=Physo124323;constitutive=1;ensembl_phase=-1;rank=1 scaffold_155 . repeat_region 16090 29066 . ? . description=dust scaffold_155 . repeat_region 29067 29544 . ? . description=dust scaffold_155 . biological_region 30481 30486 0.999 - . logic_name=eponine scaffold_155 . biological_region 32160 32166 0.999 + . logic_name=eponine scaffold_155 . biological_region 32211 32214 0.999 + . logic_name=eponine scaffold_155 . biological_region 33989 33994 0.999 + . logic_name=eponine scaffold_155 . biological_region 35878 35882 0.999 - . logic_name=eponine scaffold_155 ensembl protein_coding_gene 29545 32036 . - . ID=Physo143863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550003;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 29545 32036 . - . ID=Physo143863;Parent=Physo143863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . exon 29545 29597 . - . ID=Physo143863.2;Parent=Physo143863;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_155 . CDS 29587 29597 . - 0 ID=Physo143863;Parent=Physo143863;rank=2 scaffold_155 . CDS 29636 32036 . - 0 ID=Physo143863;Parent=Physo143863;rank=1 scaffold_155 . exon 29636 32036 . - . ID=Physo143863.1;Parent=Physo143863;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_155 ensembl protein_coding_gene 34496 42403 . - . ID=Physo143865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550005;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 34496 42403 . - . ID=Physo143865;Parent=Physo143865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . exon 34496 35012 . - . ID=Physo143865.2;Parent=Physo143865;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_155 . CDS 34497 35012 . - 0 ID=Physo143865;Parent=Physo143865;rank=2 scaffold_155 . CDS 39959 42403 . - 0 ID=Physo143865;Parent=Physo143865;rank=1 scaffold_155 . repeat_region 43424 43495 . ? . description=trf scaffold_155 . repeat_region 45368 45437 . ? . description=trf scaffold_155 . exon 39959 42403 . - . ID=Physo143865.1;Parent=Physo143865;constitutive=1;rank=1 scaffold_155 . repeat_region 49378 49385 . ? . description=dust scaffold_155 . biological_region 53690 53693 0.999 - . logic_name=eponine scaffold_155 . repeat_region 53960 53968 . ? . description=dust scaffold_155 . repeat_region 54738 54749 . ? . description=dust scaffold_155 . repeat_region 57128 57190 . ? . description=dust scaffold_155 . repeat_region 57535 57544 . ? . description=dust scaffold_155 ensembl protein_coding_gene 48704 48964 . - . ID=Physo124337;biotype=protein_coding;external_name=estExt_Genewise1.C_1550025;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 48704 48964 . - . ID=Physo124337;Parent=Physo124337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 48704 48922 . - 0 ID=Physo124337;Parent=Physo124337;rank=1 scaffold_155 . exon 48704 48964 . - . ID=Physo124337.1;Parent=Physo124337;constitutive=1;ensembl_phase=-1;rank=1 scaffold_155 ensembl protein_coding_gene 52281 53750 . - . ID=Physo143866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550006;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 52281 53750 . - . ID=Physo143866;Parent=Physo143866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 52281 52460 . - 0 ID=Physo143866;Parent=Physo143866;rank=3 scaffold_155 . exon 52281 52460 . - . ID=Physo143866.3;Parent=Physo143866;constitutive=1;rank=3 scaffold_155 . CDS 53140 53688 . - 0 ID=Physo143866;Parent=Physo143866;rank=2 scaffold_155 . exon 53140 53688 . - . ID=Physo143866.2;Parent=Physo143866;constitutive=1;rank=2 scaffold_155 . CDS 53748 53750 . - 0 ID=Physo143866;Parent=Physo143866;rank=1 scaffold_155 . exon 53748 53750 . - . ID=Physo143866.1;Parent=Physo143866;constitutive=1;rank=1 scaffold_155 ensembl protein_coding_gene 58554 62237 . + . ID=Physo143867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550007;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 58554 62237 . + . ID=Physo143867;Parent=Physo143867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 58554 58609 . + 0 ID=Physo143867;Parent=Physo143867;rank=1 scaffold_155 . exon 58554 58609 . + . ID=Physo143867.1;Parent=Physo143867;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_155 . CDS 58723 58793 . + 0 ID=Physo143867;Parent=Physo143867;rank=2 scaffold_155 . exon 58723 58793 . + . ID=Physo143867.2;Parent=Physo143867;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_155 . CDS 59010 59253 . + 0 ID=Physo143867;Parent=Physo143867;rank=3 scaffold_155 . exon 59010 59253 . + . ID=Physo143867.3;Parent=Physo143867;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_155 . CDS 59364 59470 . + 0 ID=Physo143867;Parent=Physo143867;rank=4 scaffold_155 . exon 59364 59470 . + . ID=Physo143867.4;Parent=Physo143867;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_155 . CDS 59708 59723 . + 0 ID=Physo143867;Parent=Physo143867;rank=5 scaffold_155 . exon 59708 59723 . + . ID=Physo143867.5;Parent=Physo143867;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_155 . CDS 59836 59994 . + 0 ID=Physo143867;Parent=Physo143867;rank=6 scaffold_155 . exon 59836 59994 . + . ID=Physo143867.6;Parent=Physo143867;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_155 . CDS 60798 61038 . + 0 ID=Physo143867;Parent=Physo143867;rank=7 scaffold_155 . exon 60798 61038 . + . ID=Physo143867.7;Parent=Physo143867;constitutive=1;ensembl_phase=2;rank=7 scaffold_155 . CDS 61378 61654 . + 0 ID=Physo143867;Parent=Physo143867;rank=8 scaffold_155 . exon 61378 61654 . + . ID=Physo143867.8;Parent=Physo143867;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_155 . CDS 61707 61723 . + 0 ID=Physo143867;Parent=Physo143867;rank=9 scaffold_155 . exon 61707 61723 . + . ID=Physo143867.9;Parent=Physo143867;constitutive=1;ensembl_phase=1;rank=9 scaffold_155 . CDS 61773 62237 . + 0 ID=Physo143867;Parent=Physo143867;rank=10 scaffold_155 . exon 61773 62237 . + . ID=Physo143867.10;Parent=Physo143867;constitutive=1;rank=10 scaffold_155 ensembl protein_coding_gene 62866 63206 . - . ID=Physo143868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550008;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 62866 63206 . - . ID=Physo143868;Parent=Physo143868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 62866 63101 . - 0 ID=Physo143868;Parent=Physo143868;rank=2 scaffold_155 . exon 62866 63101 . - . ID=Physo143868.2;Parent=Physo143868;constitutive=1;ensembl_phase=1;rank=2 scaffold_155 . CDS 63131 63206 . - 0 ID=Physo143868;Parent=Physo143868;rank=1 scaffold_155 . exon 63131 63206 . - . ID=Physo143868.1;Parent=Physo143868;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_155 . repeat_region 67890 67957 . ? . description=trf scaffold_155 . repeat_region 68794 68838 . ? . description=trf scaffold_155 . repeat_region 70140 70147 . ? . description=dust scaffold_155 . biological_region 74220 74222 0.999 - . logic_name=eponine scaffold_155 . biological_region 74312 74317 0.999 - . logic_name=eponine scaffold_155 . repeat_region 74414 74453 . ? . description=trf scaffold_155 . biological_region 74625 74629 0.999 + . logic_name=eponine scaffold_155 ensembl protein_coding_gene 72694 74867 . + . ID=Physo143869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550009;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 72694 74867 . + . ID=Physo143869;Parent=Physo143869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 72694 72790 . + 0 ID=Physo143869;Parent=Physo143869;rank=1 scaffold_155 . exon 72694 72790 . + . ID=Physo143869.1;Parent=Physo143869;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_155 . CDS 73505 74141 . + 0 ID=Physo143869;Parent=Physo143869;rank=2 scaffold_155 . exon 73505 74141 . + . ID=Physo143869.2;Parent=Physo143869;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_155 . CDS 74174 74489 . + 0 ID=Physo143869;Parent=Physo143869;rank=3 scaffold_155 . exon 74174 74489 . + . ID=Physo143869.3;Parent=Physo143869;constitutive=1;ensembl_phase=2;rank=3 scaffold_155 . CDS 74621 74776 . + 0 ID=Physo143869;Parent=Physo143869;rank=4 scaffold_155 . exon 74621 74776 . + . ID=Physo143869.4;Parent=Physo143869;constitutive=1;rank=4 scaffold_155 . CDS 74829 74867 . + 0 ID=Physo143869;Parent=Physo143869;rank=5 scaffold_155 . exon 74829 74867 . + . ID=Physo143869.5;Parent=Physo143869;constitutive=1;rank=5 scaffold_155 ensembl protein_coding_gene 85222 89772 . + . ID=Physo143870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550010;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 85222 89772 . + . ID=Physo143870;Parent=Physo143870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 85222 89772 . + 0 ID=Physo143870;Parent=Physo143870;rank=1 scaffold_155 . exon 85222 89772 . + . ID=Physo143870.1;Parent=Physo143870;constitutive=1;rank=1 scaffold_155 . biological_region 90823 90829 0.999 - . logic_name=eponine scaffold_155 . biological_region 91552 91558 0.999 - . logic_name=eponine scaffold_155 . repeat_region 91752 91765 . ? . description=dust scaffold_155 . repeat_region 91885 91911 . ? . description=trf scaffold_155 . biological_region 93760 93761 0.999 + . logic_name=eponine scaffold_155 . biological_region 93837 93841 0.999 + . logic_name=eponine scaffold_155 . biological_region 93844 93848 0.999 + . logic_name=eponine scaffold_155 . biological_region 94432 94435 0.999 - . logic_name=eponine scaffold_155 . repeat_region 94464 94511 . ? . description=trf scaffold_155 . biological_region 94489 94492 0.999 + . logic_name=eponine scaffold_155 . biological_region 94888 94890 0.999 + . logic_name=eponine scaffold_155 . biological_region 94915 94918 0.999 - . logic_name=eponine scaffold_155 . biological_region 96132 96133 0.999 - . logic_name=eponine scaffold_155 ensembl protein_coding_gene 94217 96188 . - . ID=Physo109597;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1550001;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 94217 96188 . - . ID=Physo109597;Parent=Physo109597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . exon 94217 96188 . - . ID=Physo109597.1;Parent=Physo109597;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_155 . CDS 94458 96188 . - 0 ID=Physo109597;Parent=Physo109597;rank=1 scaffold_155 ensembl protein_coding_gene 90080 91602 . - . ID=Physo143871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550011;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 90080 91602 . - . ID=Physo143871;Parent=Physo143871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 90080 90578 . - 0 ID=Physo143871;Parent=Physo143871;rank=2 scaffold_155 . exon 90080 90578 . - . ID=Physo143871.2;Parent=Physo143871;constitutive=1;ensembl_phase=2;rank=2 scaffold_155 . CDS 90656 91602 . - 0 ID=Physo143871;Parent=Physo143871;rank=1 scaffold_155 . exon 90656 91602 . - . ID=Physo143871.1;Parent=Physo143871;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_155 ensembl protein_coding_gene 91945 93960 . - . ID=Physo143872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550012;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 91945 93960 . - . ID=Physo143872;Parent=Physo143872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 91945 93960 . - 0 ID=Physo143872;Parent=Physo143872;rank=1 scaffold_155 . exon 91945 93960 . - . ID=Physo143872.1;Parent=Physo143872;constitutive=1;rank=1 scaffold_155 . repeat_region 106417 106494 . - . description=GypsyPi-1c_I-int scaffold_155 ensembl protein_coding_gene 97257 100309 . - . ID=Physo143874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550014;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 97257 100309 . - . ID=Physo143874;Parent=Physo143874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 97257 98585 . - 0 ID=Physo143874;Parent=Physo143874;rank=4 scaffold_155 . exon 97257 98585 . - . ID=Physo143874.4;Parent=Physo143874;constitutive=1;rank=4 scaffold_155 . CDS 98719 99431 . - 0 ID=Physo143874;Parent=Physo143874;rank=3 scaffold_155 . exon 98719 99431 . - . ID=Physo143874.3;Parent=Physo143874;constitutive=1;ensembl_phase=1;rank=3 scaffold_155 . CDS 99507 100068 . - 0 ID=Physo143874;Parent=Physo143874;rank=2 scaffold_155 . exon 99507 100068 . - . ID=Physo143874.2;Parent=Physo143874;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_155 . CDS 100235 100309 . - 0 ID=Physo143874;Parent=Physo143874;rank=1 scaffold_155 . exon 100235 100309 . - . ID=Physo143874.1;Parent=Physo143874;constitutive=1;rank=1 scaffold_155 ensembl protein_coding_gene 101053 102351 . - . ID=Physo143875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550015;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 101053 102351 . - . ID=Physo143875;Parent=Physo143875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 101053 102351 . - 0 ID=Physo143875;Parent=Physo143875;rank=1 scaffold_155 . exon 101053 102351 . - . ID=Physo143875.1;Parent=Physo143875;constitutive=1;rank=1 scaffold_155 . repeat_region 107367 107595 . ? . description=trf scaffold_155 . repeat_region 108093 108131 . ? . description=trf scaffold_155 . repeat_region 108093 108142 . ? . description=trf scaffold_155 . biological_region 109039 109039 0.999 - . logic_name=eponine scaffold_155 . repeat_region 109547 109841 . - . description=GypsyPi-1c_LTR scaffold_155 . repeat_region 109874 109917 . ? . description=trf scaffold_155 . repeat_region 110448 110499 . ? . description=trf scaffold_155 . repeat_region 110450 110554 . ? . description=trf scaffold_155 . repeat_region 110470 110529 . ? . description=trf scaffold_155 . repeat_region 112977 113765 . ? . description=dust scaffold_155 . biological_region 115993 115998 0.999 + . logic_name=eponine scaffold_155 . biological_region 116047 116048 0.999 + . logic_name=eponine scaffold_155 . biological_region 116065 116068 0.999 - . logic_name=eponine scaffold_155 ensembl protein_coding_gene 108504 109459 . - . ID=Physo143876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550016;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 108504 109459 . - . ID=Physo143876;Parent=Physo143876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 108504 109012 . - 0 ID=Physo143876;Parent=Physo143876;rank=2 scaffold_155 . exon 108504 109012 . - . ID=Physo143876.2;Parent=Physo143876;constitutive=1;ensembl_phase=1;rank=2 scaffold_155 . CDS 109195 109459 . - 0 ID=Physo143876;Parent=Physo143876;rank=1 scaffold_155 . exon 109195 109459 . - . ID=Physo143876.1;Parent=Physo143876;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_155 ensembl protein_coding_gene 111268 112152 . + . ID=Physo143877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550017;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 111268 112152 . + . ID=Physo143877;Parent=Physo143877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 111268 111736 . + 0 ID=Physo143877;Parent=Physo143877;rank=1 scaffold_155 . exon 111268 111736 . + . ID=Physo143877.1;Parent=Physo143877;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_155 . CDS 111777 112092 . + 0 ID=Physo143877;Parent=Physo143877;rank=2 scaffold_155 . exon 111777 112092 . + . ID=Physo143877.2;Parent=Physo143877;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_155 . CDS 112125 112152 . + 0 ID=Physo143877;Parent=Physo143877;rank=3 scaffold_155 . exon 112125 112152 . + . ID=Physo143877.3;Parent=Physo143877;constitutive=1;ensembl_phase=2;rank=3 scaffold_155 ensembl protein_coding_gene 114833 116226 . + . ID=Physo143878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1550018;logic_name=jgi_physo1_1 scaffold_155 ensembl transcript 114833 116226 . + . ID=Physo143878;Parent=Physo143878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_155 . CDS 114833 114957 . + 0 ID=Physo143878;Parent=Physo143878;rank=1 scaffold_155 . exon 114833 114957 . + . ID=Physo143878.1;Parent=Physo143878;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_155 . CDS 115154 116225 . + 0 ID=Physo143878;Parent=Physo143878;rank=2 scaffold_155 . exon 115154 116226 . + . ID=Physo143878.2;Parent=Physo143878;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_151 1 118282 scaffold_151 . repeat_region 1006 1164 . ? . description=trf scaffold_151 . biological_region 1074 1079 0.999 + . logic_name=eponine scaffold_151 . biological_region 1097 1097 0.999 + . logic_name=eponine scaffold_151 . biological_region 1139 1140 0.999 - . logic_name=eponine scaffold_151 . biological_region 1176 1177 0.999 + . logic_name=eponine scaffold_151 . biological_region 4225 4230 0.999 + . logic_name=eponine scaffold_151 . repeat_region 4392 4416 . ? . description=trf scaffold_151 . biological_region 5145 5146 0.999 - . logic_name=eponine scaffold_151 . repeat_region 5601 5635 . ? . description=trf scaffold_151 . biological_region 6157 6161 0.999 + . logic_name=eponine scaffold_151 . repeat_region 7500 7558 . ? . description=trf scaffold_151 . biological_region 8224 8227 0.999 - . logic_name=eponine scaffold_151 . biological_region 8839 8840 0.999 - . logic_name=eponine scaffold_151 . biological_region 8893 8899 0.999 + . logic_name=eponine scaffold_151 . repeat_region 9198 9234 . ? . description=trf scaffold_151 . repeat_region 9816 9843 . ? . description=trf scaffold_151 ensembl protein_coding_gene 2133 3311 . - . ID=Physo143765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510001;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 2133 3311 . - . ID=Physo143765;Parent=Physo143765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 2133 3311 . - 0 ID=Physo143765;Parent=Physo143765;rank=1 scaffold_151 . exon 2133 3311 . - . ID=Physo143765.1;Parent=Physo143765;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 5293 6471 . + . ID=Physo143766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510002;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 5293 6471 . + . ID=Physo143766;Parent=Physo143766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 5293 6348 . + 0 ID=Physo143766;Parent=Physo143766;rank=1 scaffold_151 . exon 5293 6471 . + . ID=Physo143766.1;Parent=Physo143766;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_151 ensembl protein_coding_gene 7328 12169 . + . ID=Physo158817;biotype=protein_coding;external_name=C_scaffold_151000001;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 7328 12169 . + . ID=Physo158817;Parent=Physo158817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 7328 7465 . + 0 ID=Physo158817;Parent=Physo158817;rank=1 scaffold_151 . exon 7328 7465 . + . ID=Physo158817.1;Parent=Physo158817;constitutive=1;rank=1 scaffold_151 . CDS 7508 7675 . + 0 ID=Physo158817;Parent=Physo158817;rank=2 scaffold_151 . exon 7508 7675 . + . ID=Physo158817.2;Parent=Physo158817;constitutive=1;rank=2 scaffold_151 . CDS 7715 8487 . + 0 ID=Physo158817;Parent=Physo158817;rank=3 scaffold_151 . exon 7715 8487 . + . ID=Physo158817.3;Parent=Physo158817;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_151 . CDS 8896 9254 . + 0 ID=Physo158817;Parent=Physo158817;rank=4 scaffold_151 . exon 8896 9254 . + . ID=Physo158817.4;Parent=Physo158817;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_151 . CDS 9354 9780 . + 0 ID=Physo158817;Parent=Physo158817;rank=5 scaffold_151 . exon 9354 9780 . + . ID=Physo158817.5;Parent=Physo158817;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_151 . CDS 9805 11562 . + 0 ID=Physo158817;Parent=Physo158817;rank=6 scaffold_151 . exon 9805 11562 . + . ID=Physo158817.6;Parent=Physo158817;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_151 . CDS 11614 11956 . + 0 ID=Physo158817;Parent=Physo158817;rank=7 scaffold_151 . CDS 11984 12169 . + 0 ID=Physo158817;Parent=Physo158817;rank=8 scaffold_151 ensembl protein_coding_gene 12688 15466 . + . ID=Physo143769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510005;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 12688 15466 . + . ID=Physo143769;Parent=Physo143769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 12688 12969 . + 0 ID=Physo143769;Parent=Physo143769;rank=1 scaffold_151 . exon 12688 12969 . + . ID=Physo143769.1;Parent=Physo143769;constitutive=1;rank=1 scaffold_151 . CDS 13050 13899 . + 0 ID=Physo143769;Parent=Physo143769;rank=2 scaffold_151 . exon 13050 13899 . + . ID=Physo143769.2;Parent=Physo143769;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_151 . CDS 13976 15051 . + 0 ID=Physo143769;Parent=Physo143769;rank=3 scaffold_151 . exon 13976 15051 . + . ID=Physo143769.3;Parent=Physo143769;constitutive=1;ensembl_phase=1;rank=3 scaffold_151 . CDS 15130 15288 . + 0 ID=Physo143769;Parent=Physo143769;rank=4 scaffold_151 . exon 15130 15466 . + . ID=Physo143769.4;Parent=Physo143769;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_151 ensembl protein_coding_gene 15485 16844 . - . ID=Physo143770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510006;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 15485 16844 . - . ID=Physo143770;Parent=Physo143770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 15485 16219 . - 0 ID=Physo143770;Parent=Physo143770;rank=2 scaffold_151 . exon 15485 16219 . - . ID=Physo143770.2;Parent=Physo143770;constitutive=1;rank=2 scaffold_151 . CDS 16301 16837 . - 0 ID=Physo143770;Parent=Physo143770;rank=1 scaffold_151 . exon 16301 16844 . - . ID=Physo143770.1;Parent=Physo143770;constitutive=1;ensembl_phase=-1;rank=1 scaffold_151 ensembl protein_coding_gene 18453 20213 . + . ID=Physo143771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510007;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 18453 20213 . + . ID=Physo143771;Parent=Physo143771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 18453 20213 . + 0 ID=Physo143771;Parent=Physo143771;rank=1 scaffold_151 . exon 18453 20213 . + . ID=Physo143771.1;Parent=Physo143771;constitutive=1;rank=1 scaffold_151 . exon 11614 11956 . + . ID=Physo158817.7;Parent=Physo158817;constitutive=1;ensembl_phase=2;rank=7 scaffold_151 . exon 11984 12169 . + . ID=Physo158817.8;Parent=Physo158817;constitutive=1;rank=8 scaffold_151 . biological_region 22163 22166 0.999 + . logic_name=eponine scaffold_151 . biological_region 22221 22223 0.999 + . logic_name=eponine scaffold_151 . biological_region 22448 22451 0.999 + . logic_name=eponine scaffold_151 . biological_region 22468 22468 0.999 + . logic_name=eponine scaffold_151 . biological_region 22542 22544 0.999 - . logic_name=eponine scaffold_151 . biological_region 22882 22884 0.999 - . logic_name=eponine scaffold_151 . biological_region 24540 24548 0.999 + . logic_name=eponine scaffold_151 . biological_region 24589 24591 0.999 + . logic_name=eponine scaffold_151 . repeat_region 24687 26215 . ? . description=trf scaffold_151 . repeat_region 27141 27148 . ? . description=dust scaffold_151 ensembl protein_coding_gene 20259 22862 . - . ID=Physo143772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510008;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 20259 22862 . - . ID=Physo143772;Parent=Physo143772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . exon 20259 22862 . - . ID=Physo143772.1;Parent=Physo143772;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_151 . CDS 20382 22862 . - 0 ID=Physo143772;Parent=Physo143772;rank=1 scaffold_151 ensembl protein_coding_gene 24543 26377 . + . ID=Physo143773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510009;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 24543 26377 . + . ID=Physo143773;Parent=Physo143773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . exon 24543 26377 . + . ID=Physo143773.1;Parent=Physo143773;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_151 . CDS 24580 26220 . + 0 ID=Physo143773;Parent=Physo143773;rank=1 scaffold_151 ensembl protein_coding_gene 30959 32458 . - . ID=Physo109588;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1510001;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 30959 32458 . - . ID=Physo109588;Parent=Physo109588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 30959 32458 . - 0 ID=Physo109588;Parent=Physo109588;rank=1 scaffold_151 . exon 30959 32458 . - . ID=Physo109588.1;Parent=Physo109588;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 32574 34960 . - . ID=Physo143775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510011;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 32574 34960 . - . ID=Physo143775;Parent=Physo143775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . exon 32574 32967 . - . ID=Physo143775.4;Parent=Physo143775;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_151 . CDS 32575 32967 . - 0 ID=Physo143775;Parent=Physo143775;rank=4 scaffold_151 . CDS 32991 33861 . - 0 ID=Physo143775;Parent=Physo143775;rank=3 scaffold_151 . exon 32991 33861 . - . ID=Physo143775.3;Parent=Physo143775;constitutive=1;ensembl_phase=2;rank=3 scaffold_151 . CDS 33978 34295 . - 0 ID=Physo143775;Parent=Physo143775;rank=2 scaffold_151 . exon 33978 34295 . - . ID=Physo143775.2;Parent=Physo143775;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_151 . CDS 34347 34960 . - 0 ID=Physo143775;Parent=Physo143775;rank=1 scaffold_151 . exon 34347 34960 . - . ID=Physo143775.1;Parent=Physo143775;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_151 . repeat_region 36077 40468 . ? . description=dust scaffold_151 . biological_region 40758 40764 0.999 - . logic_name=eponine scaffold_151 . repeat_region 40827 40835 . ? . description=dust scaffold_151 . biological_region 43477 43478 0.999 + . logic_name=eponine scaffold_151 . biological_region 44703 44711 0.999 - . logic_name=eponine scaffold_151 . biological_region 46883 46884 0.999 + . logic_name=eponine scaffold_151 . repeat_region 47105 47187 . ? . description=trf scaffold_151 . biological_region 48469 48476 0.999 + . logic_name=eponine scaffold_151 . repeat_region 49089 49134 . ? . description=trf scaffold_151 ensembl protein_coding_gene 42076 45585 . + . ID=Physo143776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510012;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 42076 45585 . + . ID=Physo143776;Parent=Physo143776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 42076 42243 . + 0 ID=Physo143776;Parent=Physo143776;rank=1 scaffold_151 . exon 42076 42243 . + . ID=Physo143776.1;Parent=Physo143776;constitutive=1;rank=1 scaffold_151 . CDS 42458 42896 . + 0 ID=Physo143776;Parent=Physo143776;rank=2 scaffold_151 . exon 42458 42896 . + . ID=Physo143776.2;Parent=Physo143776;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_151 . CDS 43297 44226 . + 0 ID=Physo143776;Parent=Physo143776;rank=3 scaffold_151 . exon 43297 44226 . + . ID=Physo143776.3;Parent=Physo143776;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_151 . CDS 44405 44770 . + 0 ID=Physo143776;Parent=Physo143776;rank=4 scaffold_151 . exon 44405 44770 . + . ID=Physo143776.4;Parent=Physo143776;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_151 . CDS 44825 44897 . + 0 ID=Physo143776;Parent=Physo143776;rank=5 scaffold_151 . exon 44825 44897 . + . ID=Physo143776.5;Parent=Physo143776;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_151 . CDS 45180 45585 . + 0 ID=Physo143776;Parent=Physo143776;rank=6 scaffold_151 . exon 45180 45585 . + . ID=Physo143776.6;Parent=Physo143776;constitutive=1;ensembl_phase=2;rank=6 scaffold_151 ensembl protein_coding_gene 47770 48654 . - . ID=Physo143777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510013;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 47770 48654 . - . ID=Physo143777;Parent=Physo143777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 47770 48654 . - 0 ID=Physo143777;Parent=Physo143777;rank=1 scaffold_151 . exon 47770 48654 . - . ID=Physo143777.1;Parent=Physo143777;constitutive=1;rank=1 scaffold_151 . repeat_region 59143 74055 . ? . description=dust scaffold_151 . biological_region 76140 76143 0.999 - . logic_name=eponine scaffold_151 . biological_region 78063 78064 0.999 + . logic_name=eponine scaffold_151 ensembl protein_coding_gene 74157 75723 . + . ID=Physo143778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510014;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 74157 75723 . + . ID=Physo143778;Parent=Physo143778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 74157 74216 . + 0 ID=Physo143778;Parent=Physo143778;rank=1 scaffold_151 . exon 74157 74216 . + . ID=Physo143778.1;Parent=Physo143778;constitutive=1;rank=1 scaffold_151 . CDS 74329 75723 . + 0 ID=Physo143778;Parent=Physo143778;rank=2 scaffold_151 . exon 74329 75723 . + . ID=Physo143778.2;Parent=Physo143778;constitutive=1;rank=2 scaffold_151 ensembl protein_coding_gene 77004 78858 . + . ID=Physo143779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510015;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 77004 78858 . + . ID=Physo143779;Parent=Physo143779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 77004 77785 . + 0 ID=Physo143779;Parent=Physo143779;rank=1 scaffold_151 . exon 77004 77785 . + . ID=Physo143779.1;Parent=Physo143779;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_151 . CDS 77811 78858 . + 0 ID=Physo143779;Parent=Physo143779;rank=2 scaffold_151 . exon 77811 78858 . + . ID=Physo143779.2;Parent=Physo143779;constitutive=1;ensembl_phase=2;rank=2 scaffold_151 ensembl protein_coding_gene 85277 86743 . + . ID=Physo143780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510016;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 85277 86743 . + . ID=Physo143780;Parent=Physo143780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 85277 86743 . + 0 ID=Physo143780;Parent=Physo143780;rank=1 scaffold_151 . exon 85277 86743 . + . ID=Physo143780.1;Parent=Physo143780;constitutive=1;rank=1 scaffold_151 . repeat_region 91597 91610 . ? . description=dust scaffold_151 . biological_region 91868 91874 0.999 + . logic_name=eponine scaffold_151 . biological_region 92025 92026 0.999 - . logic_name=eponine scaffold_151 . biological_region 92123 92124 0.999 - . logic_name=eponine scaffold_151 . biological_region 92223 92225 0.999 - . logic_name=eponine scaffold_151 . biological_region 92242 92245 0.999 - . logic_name=eponine scaffold_151 . biological_region 92331 92332 0.999 + . logic_name=eponine scaffold_151 . biological_region 94037 94043 0.999 + . logic_name=eponine scaffold_151 . biological_region 94484 94487 0.999 + . logic_name=eponine scaffold_151 . repeat_region 97462 97471 . ? . description=dust scaffold_151 . repeat_region 97866 97874 . ? . description=dust scaffold_151 . repeat_region 98019 98120 . ? . description=trf scaffold_151 . biological_region 98070 98071 0.999 + . logic_name=eponine scaffold_151 . biological_region 98114 98116 0.999 + . logic_name=eponine scaffold_151 . biological_region 98289 98292 0.999 - . logic_name=eponine scaffold_151 . biological_region 98364 98365 0.999 - . logic_name=eponine scaffold_151 . biological_region 98425 98428 0.999 - . logic_name=eponine scaffold_151 . biological_region 98480 98482 0.999 + . logic_name=eponine scaffold_151 ensembl protein_coding_gene 95191 95745 . + . ID=Physo109589;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1510002;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 95191 95745 . + . ID=Physo109589;Parent=Physo109589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 95191 95403 . + 0 ID=Physo109589;Parent=Physo109589;rank=1 scaffold_151 . exon 95191 95403 . + . ID=Physo109589.1;Parent=Physo109589;constitutive=1;rank=1 scaffold_151 . CDS 95476 95745 . + 0 ID=Physo109589;Parent=Physo109589;rank=2 scaffold_151 . exon 95476 95745 . + . ID=Physo109589.2;Parent=Physo109589;constitutive=1;rank=2 scaffold_151 ensembl protein_coding_gene 90613 91579 . + . ID=Physo143781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510017;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 90613 91579 . + . ID=Physo143781;Parent=Physo143781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 90613 90835 . + 0 ID=Physo143781;Parent=Physo143781;rank=1 scaffold_151 . exon 90613 90835 . + . ID=Physo143781.1;Parent=Physo143781;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_151 . CDS 90987 91184 . + 0 ID=Physo143781;Parent=Physo143781;rank=2 scaffold_151 . exon 90987 91184 . + . ID=Physo143781.2;Parent=Physo143781;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_151 . CDS 91227 91300 . + 0 ID=Physo143781;Parent=Physo143781;rank=3 scaffold_151 . exon 91227 91300 . + . ID=Physo143781.3;Parent=Physo143781;constitutive=1;ensembl_phase=1;rank=3 scaffold_151 . CDS 91571 91579 . + 0 ID=Physo143781;Parent=Physo143781;rank=4 scaffold_151 . exon 91571 91579 . + . ID=Physo143781.4;Parent=Physo143781;constitutive=1;rank=4 scaffold_151 ensembl protein_coding_gene 91758 94242 . - . ID=Physo143782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510018;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 91758 94242 . - . ID=Physo143782;Parent=Physo143782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . exon 91758 94242 . - . ID=Physo143782.1;Parent=Physo143782;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_151 . CDS 91839 94199 . - 0 ID=Physo143782;Parent=Physo143782;rank=1 scaffold_151 ensembl protein_coding_gene 96060 96601 . - . ID=Physo143784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510020;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 96060 96601 . - . ID=Physo143784;Parent=Physo143784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . exon 96060 96601 . - . ID=Physo143784.1;Parent=Physo143784;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_151 . CDS 96119 96601 . - 0 ID=Physo143784;Parent=Physo143784;rank=1 scaffold_151 ensembl protein_coding_gene 97294 97821 . + . ID=Physo143785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510021;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 97294 97821 . + . ID=Physo143785;Parent=Physo143785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 97294 97821 . + 0 ID=Physo143785;Parent=Physo143785;rank=1 scaffold_151 . exon 97294 97821 . + . ID=Physo143785.1;Parent=Physo143785;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 97957 98604 . - . ID=Physo143786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510022;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 97957 98604 . - . ID=Physo143786;Parent=Physo143786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 97957 98604 . - 0 ID=Physo143786;Parent=Physo143786;rank=1 scaffold_151 . exon 97957 98604 . - . ID=Physo143786.1;Parent=Physo143786;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 99399 100001 . - . ID=Physo143787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510023;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 99399 100001 . - . ID=Physo143787;Parent=Physo143787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 99399 100001 . - 0 ID=Physo143787;Parent=Physo143787;rank=1 scaffold_151 . exon 99399 100001 . - . ID=Physo143787.1;Parent=Physo143787;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 100761 102730 . - . ID=Physo143788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510024;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 100761 102730 . - . ID=Physo143788;Parent=Physo143788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 100761 101862 . - 0 ID=Physo143788;Parent=Physo143788;rank=3 scaffold_151 . exon 100761 101862 . - . ID=Physo143788.3;Parent=Physo143788;constitutive=1;ensembl_phase=2;rank=3 scaffold_151 . CDS 101957 102485 . - 0 ID=Physo143788;Parent=Physo143788;rank=2 scaffold_151 . exon 101957 102485 . - . ID=Physo143788.2;Parent=Physo143788;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_151 . CDS 102622 102730 . - 0 ID=Physo143788;Parent=Physo143788;rank=1 scaffold_151 . exon 102622 102730 . - . ID=Physo143788.1;Parent=Physo143788;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_151 ensembl protein_coding_gene 103163 104440 . + . ID=Physo143789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510025;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 103163 104440 . + . ID=Physo143789;Parent=Physo143789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . exon 103163 103307 . + . ID=Physo143789.1;Parent=Physo143789;constitutive=1;ensembl_phase=-1;rank=1 scaffold_151 . CDS 103164 103307 . + 0 ID=Physo143789;Parent=Physo143789;rank=1 scaffold_151 . CDS 103379 103424 . + 0 ID=Physo143789;Parent=Physo143789;rank=2 scaffold_151 . exon 103379 103424 . + . ID=Physo143789.2;Parent=Physo143789;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_151 . CDS 103489 103578 . + 0 ID=Physo143789;Parent=Physo143789;rank=3 scaffold_151 . exon 103489 103578 . + . ID=Physo143789.3;Parent=Physo143789;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_151 . CDS 103641 103696 . + 0 ID=Physo143789;Parent=Physo143789;rank=4 scaffold_151 . exon 103641 103696 . + . ID=Physo143789.4;Parent=Physo143789;constitutive=1;ensembl_phase=1;rank=4 scaffold_151 . CDS 103775 104440 . + 0 ID=Physo143789;Parent=Physo143789;rank=5 scaffold_151 . exon 103775 104440 . + . ID=Physo143789.5;Parent=Physo143789;constitutive=1;rank=5 scaffold_151 ensembl protein_coding_gene 104578 105609 . - . ID=Physo143790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510026;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 104578 105609 . - . ID=Physo143790;Parent=Physo143790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 104578 105609 . - 0 ID=Physo143790;Parent=Physo143790;rank=1 scaffold_151 . exon 104578 105609 . - . ID=Physo143790.1;Parent=Physo143790;constitutive=1;rank=1 scaffold_151 ensembl protein_coding_gene 106138 109341 . - . ID=Physo143791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510027;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 106138 109341 . - . ID=Physo143791;Parent=Physo143791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . exon 106138 109341 . - . ID=Physo143791.1;Parent=Physo143791;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_151 . CDS 106243 109341 . - 0 ID=Physo143791;Parent=Physo143791;rank=1 scaffold_151 . repeat_region 109355 109363 . ? . description=dust scaffold_151 . repeat_region 110737 110745 . ? . description=dust scaffold_151 . biological_region 111125 111128 0.999 - . logic_name=eponine scaffold_151 . repeat_region 112517 112524 . ? . description=dust scaffold_151 . repeat_region 113081 113090 . ? . description=dust scaffold_151 . biological_region 115446 115451 0.999 - . logic_name=eponine scaffold_151 . biological_region 116886 116887 0.999 - . logic_name=eponine scaffold_151 . repeat_region 117744 117753 . ? . description=dust scaffold_151 ensembl protein_coding_gene 114085 115574 . + . ID=Physo143792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510028;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 114085 115574 . + . ID=Physo143792;Parent=Physo143792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . exon 114085 114515 . + . ID=Physo143792.1;Parent=Physo143792;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_151 . CDS 114094 114515 . + 0 ID=Physo143792;Parent=Physo143792;rank=1 scaffold_151 . CDS 114609 114651 . + 0 ID=Physo143792;Parent=Physo143792;rank=2 scaffold_151 . exon 114609 114651 . + . ID=Physo143792.2;Parent=Physo143792;constitutive=1;ensembl_phase=2;rank=2 scaffold_151 . CDS 114698 115477 . + 0 ID=Physo143792;Parent=Physo143792;rank=3 scaffold_151 . exon 114698 115574 . + . ID=Physo143792.3;Parent=Physo143792;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_151 ensembl protein_coding_gene 115956 116957 . - . ID=Physo143793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1510029;logic_name=jgi_physo1_1 scaffold_151 ensembl transcript 115956 116957 . - . ID=Physo143793;Parent=Physo143793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_151 . CDS 115956 116957 . - 0 ID=Physo143793;Parent=Physo143793;rank=1 scaffold_151 . exon 115956 116957 . - . ID=Physo143793.1;Parent=Physo143793;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_153 1 120359 scaffold_153 . biological_region 1936 1936 0.999 - . logic_name=eponine scaffold_153 . biological_region 7502 7503 0.999 + . logic_name=eponine scaffold_153 . biological_region 7802 7802 0.999 - . logic_name=eponine scaffold_153 . repeat_region 8318 10732 . ? . description=dust scaffold_153 ensembl protein_coding_gene 401 2473 . - . ID=Physo143816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530001;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 401 2473 . - . ID=Physo143816;Parent=Physo143816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 401 685 . - 0 ID=Physo143816;Parent=Physo143816;rank=7 scaffold_153 . exon 401 685 . - . ID=Physo143816.7;Parent=Physo143816;constitutive=1;rank=7 scaffold_153 . CDS 768 849 . - 0 ID=Physo143816;Parent=Physo143816;rank=6 scaffold_153 . exon 768 849 . - . ID=Physo143816.6;Parent=Physo143816;constitutive=1;ensembl_phase=2;rank=6 scaffold_153 . CDS 915 1119 . - 0 ID=Physo143816;Parent=Physo143816;rank=5 scaffold_153 . exon 915 1119 . - . ID=Physo143816.5;Parent=Physo143816;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_153 . CDS 1248 1383 . - 0 ID=Physo143816;Parent=Physo143816;rank=4 scaffold_153 . exon 1248 1383 . - . ID=Physo143816.4;Parent=Physo143816;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_153 . CDS 1447 2078 . - 0 ID=Physo143816;Parent=Physo143816;rank=3 scaffold_153 . exon 1447 2078 . - . ID=Physo143816.3;Parent=Physo143816;constitutive=1;ensembl_phase=1;rank=3 scaffold_153 . CDS 2141 2320 . - 0 ID=Physo143816;Parent=Physo143816;rank=2 scaffold_153 . exon 2141 2320 . - . ID=Physo143816.2;Parent=Physo143816;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_153 . CDS 2404 2473 . - 0 ID=Physo143816;Parent=Physo143816;rank=1 scaffold_153 . exon 2404 2473 . - . ID=Physo143816.1;Parent=Physo143816;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_153 ensembl protein_coding_gene 3742 4116 . - . ID=Physo143817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530002;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 3742 4116 . - . ID=Physo143817;Parent=Physo143817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 3742 4116 . - 0 ID=Physo143817;Parent=Physo143817;rank=1 scaffold_153 . exon 3742 4116 . - . ID=Physo143817.1;Parent=Physo143817;constitutive=1;rank=1 scaffold_153 ensembl protein_coding_gene 6329 8164 . + . ID=Physo143818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530003;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 6329 8164 . + . ID=Physo143818;Parent=Physo143818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 6329 6361 . + 0 ID=Physo143818;Parent=Physo143818;rank=1 scaffold_153 . exon 6329 6361 . + . ID=Physo143818.1;Parent=Physo143818;constitutive=1;rank=1 scaffold_153 . CDS 6476 6541 . + 0 ID=Physo143818;Parent=Physo143818;rank=2 scaffold_153 . exon 6476 6541 . + . ID=Physo143818.2;Parent=Physo143818;constitutive=1;rank=2 scaffold_153 . CDS 7022 7219 . + 0 ID=Physo143818;Parent=Physo143818;rank=3 scaffold_153 . exon 7022 7219 . + . ID=Physo143818.3;Parent=Physo143818;constitutive=1;rank=3 scaffold_153 . CDS 7296 7491 . + 0 ID=Physo143818;Parent=Physo143818;rank=4 scaffold_153 . exon 7296 7491 . + . ID=Physo143818.4;Parent=Physo143818;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_153 . CDS 7536 8164 . + 0 ID=Physo143818;Parent=Physo143818;rank=5 scaffold_153 . exon 7536 8164 . + . ID=Physo143818.5;Parent=Physo143818;constitutive=1;ensembl_phase=1;rank=5 scaffold_153 . repeat_region 14003 14048 . - . description=Polinton-1_PI scaffold_153 . repeat_region 14202 14490 . - . description=Polinton-1_PI scaffold_153 . repeat_region 14609 14687 . - . description=Polinton-1_PI scaffold_153 ensembl protein_coding_gene 10898 14365 . - . ID=Physo143819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530004;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 10898 14365 . - . ID=Physo143819;Parent=Physo143819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 10898 10929 . - 0 ID=Physo143819;Parent=Physo143819;rank=3 scaffold_153 . exon 10898 10929 . - . ID=Physo143819.3;Parent=Physo143819;constitutive=1;ensembl_phase=1;rank=3 scaffold_153 . CDS 10992 11934 . - 0 ID=Physo143819;Parent=Physo143819;rank=2 scaffold_153 . exon 10992 11934 . - . ID=Physo143819.2;Parent=Physo143819;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_153 . CDS 13860 14363 . - 0 ID=Physo143819;Parent=Physo143819;rank=1 scaffold_153 . exon 13860 14365 . - . ID=Physo143819.1;Parent=Physo143819;constitutive=1;ensembl_phase=-1;rank=1 scaffold_153 ensembl protein_coding_gene 15386 15823 . - . ID=Physo143820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530005;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 15386 15823 . - . ID=Physo143820;Parent=Physo143820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 15386 15823 . - 0 ID=Physo143820;Parent=Physo143820;rank=1 scaffold_153 . exon 15386 15823 . - . ID=Physo143820.1;Parent=Physo143820;constitutive=1;rank=1 scaffold_153 ensembl protein_coding_gene 16912 18782 . + . ID=Physo143821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530006;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 16912 18782 . + . ID=Physo143821;Parent=Physo143821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 16912 17188 . + 0 ID=Physo143821;Parent=Physo143821;rank=1 scaffold_153 . exon 16912 17188 . + . ID=Physo143821.1;Parent=Physo143821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_153 . CDS 17583 17751 . + 0 ID=Physo143821;Parent=Physo143821;rank=2 scaffold_153 . exon 17583 17751 . + . ID=Physo143821.2;Parent=Physo143821;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_153 . CDS 18068 18782 . + 0 ID=Physo143821;Parent=Physo143821;rank=3 scaffold_153 . exon 18068 18782 . + . ID=Physo143821.3;Parent=Physo143821;constitutive=1;ensembl_phase=2;rank=3 scaffold_153 . biological_region 22156 22159 0.999 + . logic_name=eponine scaffold_153 . repeat_region 23636 23697 . ? . description=trf scaffold_153 . repeat_region 25673 25718 . ? . description=dust scaffold_153 . repeat_region 26332 26339 . ? . description=dust scaffold_153 . repeat_region 26468 26476 . ? . description=dust scaffold_153 . repeat_region 26655 26664 . ? . description=dust scaffold_153 ensembl protein_coding_gene 19274 19788 . + . ID=Physo143822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530007;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 19274 19788 . + . ID=Physo143822;Parent=Physo143822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 19274 19529 . + 0 ID=Physo143822;Parent=Physo143822;rank=1 scaffold_153 . exon 19274 19529 . + . ID=Physo143822.1;Parent=Physo143822;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_153 . CDS 19574 19788 . + 0 ID=Physo143822;Parent=Physo143822;rank=2 scaffold_153 . exon 19574 19788 . + . ID=Physo143822.2;Parent=Physo143822;constitutive=1;ensembl_phase=1;rank=2 scaffold_153 ensembl protein_coding_gene 36093 37073 . - . ID=Physo109591;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1530001;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 36093 37073 . - . ID=Physo109591;Parent=Physo109591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 36093 36316 . - 0 ID=Physo109591;Parent=Physo109591;rank=3 scaffold_153 . exon 36093 36316 . - . ID=Physo109591.3;Parent=Physo109591;constitutive=1;ensembl_phase=1;rank=3 scaffold_153 . CDS 36358 36831 . - 0 ID=Physo109591;Parent=Physo109591;rank=2 scaffold_153 . exon 36358 36831 . - . ID=Physo109591.2;Parent=Physo109591;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_153 . CDS 36953 37073 . - 0 ID=Physo109591;Parent=Physo109591;rank=1 scaffold_153 . exon 36953 37073 . - . ID=Physo109591.1;Parent=Physo109591;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_153 ensembl protein_coding_gene 34479 35684 . + . ID=Physo143823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530008;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 34479 35684 . + . ID=Physo143823;Parent=Physo143823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 34479 34571 . + 0 ID=Physo143823;Parent=Physo143823;rank=1 scaffold_153 . exon 34479 34571 . + . ID=Physo143823.1;Parent=Physo143823;constitutive=1;rank=1 scaffold_153 . CDS 34641 34876 . + 0 ID=Physo143823;Parent=Physo143823;rank=2 scaffold_153 . exon 34641 34876 . + . ID=Physo143823.2;Parent=Physo143823;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_153 . CDS 34933 35013 . + 0 ID=Physo143823;Parent=Physo143823;rank=3 scaffold_153 . exon 34933 35013 . + . ID=Physo143823.3;Parent=Physo143823;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_153 . CDS 35084 35090 . + 0 ID=Physo143823;Parent=Physo143823;rank=4 scaffold_153 . exon 35084 35090 . + . ID=Physo143823.4;Parent=Physo143823;constitutive=1;ensembl_phase=2;rank=4 scaffold_153 . CDS 35147 35596 . + 0 ID=Physo143823;Parent=Physo143823;rank=5 scaffold_153 . exon 35147 35596 . + . ID=Physo143823.5;Parent=Physo143823;constitutive=1;rank=5 scaffold_153 . CDS 35640 35684 . + 0 ID=Physo143823;Parent=Physo143823;rank=6 scaffold_153 . exon 35640 35684 . + . ID=Physo143823.6;Parent=Physo143823;constitutive=1;rank=6 scaffold_153 . biological_region 39334 39337 0.999 + . logic_name=eponine scaffold_153 . biological_region 42330 42332 0.999 + . logic_name=eponine scaffold_153 . biological_region 42372 42373 0.999 + . logic_name=eponine scaffold_153 . repeat_region 44057 44092 . ? . description=trf scaffold_153 . repeat_region 44062 44097 . ? . description=trf scaffold_153 . repeat_region 44406 44420 . ? . description=dust scaffold_153 . repeat_region 45357 45435 . ? . description=trf scaffold_153 . repeat_region 45376 45467 . ? . description=trf scaffold_153 . biological_region 45959 45963 0.999 + . logic_name=eponine scaffold_153 . biological_region 46053 46059 0.999 - . logic_name=eponine scaffold_153 ensembl protein_coding_gene 38068 39942 . - . ID=Physo143825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530010;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 38068 39942 . - . ID=Physo143825;Parent=Physo143825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 38068 38572 . - 0 ID=Physo143825;Parent=Physo143825;rank=4 scaffold_153 . exon 38068 38572 . - . ID=Physo143825.4;Parent=Physo143825;constitutive=1;ensembl_phase=2;rank=4 scaffold_153 . CDS 38617 38630 . - 0 ID=Physo143825;Parent=Physo143825;rank=3 scaffold_153 . exon 38617 38630 . - . ID=Physo143825.3;Parent=Physo143825;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_153 . CDS 38651 39739 . - 0 ID=Physo143825;Parent=Physo143825;rank=2 scaffold_153 . exon 38651 39739 . - . ID=Physo143825.2;Parent=Physo143825;constitutive=1;rank=2 scaffold_153 . CDS 39772 39942 . - 0 ID=Physo143825;Parent=Physo143825;rank=1 scaffold_153 . exon 39772 39942 . - . ID=Physo143825.1;Parent=Physo143825;constitutive=1;rank=1 scaffold_153 ensembl protein_coding_gene 40294 41507 . + . ID=Physo143826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530011;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 40294 41507 . + . ID=Physo143826;Parent=Physo143826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 40294 40506 . + 0 ID=Physo143826;Parent=Physo143826;rank=1 scaffold_153 . exon 40294 40506 . + . ID=Physo143826.1;Parent=Physo143826;constitutive=1;rank=1 scaffold_153 . CDS 40530 41507 . + 0 ID=Physo143826;Parent=Physo143826;rank=2 scaffold_153 . exon 40530 41507 . + . ID=Physo143826.2;Parent=Physo143826;constitutive=1;rank=2 scaffold_153 ensembl protein_coding_gene 42322 43472 . + . ID=Physo143827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530012;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 42322 43472 . + . ID=Physo143827;Parent=Physo143827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 42322 43246 . + 0 ID=Physo143827;Parent=Physo143827;rank=1 scaffold_153 . exon 42322 43246 . + . ID=Physo143827.1;Parent=Physo143827;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_153 . CDS 43276 43472 . + 0 ID=Physo143827;Parent=Physo143827;rank=2 scaffold_153 . exon 43276 43472 . + . ID=Physo143827.2;Parent=Physo143827;constitutive=1;ensembl_phase=1;rank=2 scaffold_153 ensembl protein_coding_gene 45225 46381 . + . ID=Physo143828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530013;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 45225 46381 . + . ID=Physo143828;Parent=Physo143828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 45225 45703 . + 0 ID=Physo143828;Parent=Physo143828;rank=1 scaffold_153 . exon 45225 45703 . + . ID=Physo143828.1;Parent=Physo143828;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_153 . CDS 45908 46115 . + 0 ID=Physo143828;Parent=Physo143828;rank=2 scaffold_153 . exon 45908 46115 . + . ID=Physo143828.2;Parent=Physo143828;constitutive=1;ensembl_phase=2;rank=2 scaffold_153 . CDS 46178 46381 . + 0 ID=Physo143828;Parent=Physo143828;rank=3 scaffold_153 . exon 46178 46381 . + . ID=Physo143828.3;Parent=Physo143828;constitutive=1;rank=3 scaffold_153 . repeat_region 51994 52379 . - . description=GypsyPi-1c_I-int scaffold_153 ensembl protein_coding_gene 46793 49562 . - . ID=Physo143829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530014;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 46793 49562 . - . ID=Physo143829;Parent=Physo143829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 46793 47174 . - 0 ID=Physo143829;Parent=Physo143829;rank=7 scaffold_153 . exon 46793 47174 . - . ID=Physo143829.7;Parent=Physo143829;constitutive=1;ensembl_phase=2;rank=7 scaffold_153 . CDS 47377 47659 . - 0 ID=Physo143829;Parent=Physo143829;rank=6 scaffold_153 . exon 47377 47659 . - . ID=Physo143829.6;Parent=Physo143829;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_153 . CDS 47829 48054 . - 0 ID=Physo143829;Parent=Physo143829;rank=5 scaffold_153 . exon 47829 48054 . - . ID=Physo143829.5;Parent=Physo143829;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_153 . CDS 48078 48212 . - 0 ID=Physo143829;Parent=Physo143829;rank=4 scaffold_153 . exon 48078 48212 . - . ID=Physo143829.4;Parent=Physo143829;constitutive=1;rank=4 scaffold_153 . CDS 48332 48361 . - 0 ID=Physo143829;Parent=Physo143829;rank=3 scaffold_153 . exon 48332 48361 . - . ID=Physo143829.3;Parent=Physo143829;constitutive=1;rank=3 scaffold_153 . CDS 48421 48884 . - 0 ID=Physo143829;Parent=Physo143829;rank=2 scaffold_153 . exon 48421 48884 . - . ID=Physo143829.2;Parent=Physo143829;constitutive=1;ensembl_phase=1;rank=2 scaffold_153 . CDS 49055 49562 . - 0 ID=Physo143829;Parent=Physo143829;rank=1 scaffold_153 . exon 49055 49562 . - . ID=Physo143829.1;Parent=Physo143829;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_153 ensembl protein_coding_gene 49786 50628 . - . ID=Physo143830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530015;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 49786 50628 . - . ID=Physo143830;Parent=Physo143830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 49786 50057 . - 0 ID=Physo143830;Parent=Physo143830;rank=3 scaffold_153 . exon 49786 50057 . - . ID=Physo143830.3;Parent=Physo143830;constitutive=1;ensembl_phase=1;rank=3 scaffold_153 . CDS 50093 50238 . - 0 ID=Physo143830;Parent=Physo143830;rank=2 scaffold_153 . exon 50093 50238 . - . ID=Physo143830.2;Parent=Physo143830;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_153 . CDS 50270 50628 . - 0 ID=Physo143830;Parent=Physo143830;rank=1 scaffold_153 . exon 50270 50628 . - . ID=Physo143830.1;Parent=Physo143830;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_153 ensembl protein_coding_gene 51249 56279 . - . ID=Physo143831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530016;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 51249 56279 . - . ID=Physo143831;Parent=Physo143831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 51249 52270 . - 0 ID=Physo143831;Parent=Physo143831;rank=3 scaffold_153 . exon 51249 52270 . - . ID=Physo143831.3;Parent=Physo143831;constitutive=1;ensembl_phase=1;rank=3 scaffold_153 . CDS 52448 54875 . - 0 ID=Physo143831;Parent=Physo143831;rank=2 scaffold_153 . exon 52448 54875 . - . ID=Physo143831.2;Parent=Physo143831;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_153 . CDS 55071 56279 . - 0 ID=Physo143831;Parent=Physo143831;rank=1 scaffold_153 . exon 55071 56279 . - . ID=Physo143831.1;Parent=Physo143831;constitutive=1;rank=1 scaffold_153 . biological_region 56282 56283 0.999 - . logic_name=eponine scaffold_153 . biological_region 56792 56797 0.999 + . logic_name=eponine scaffold_153 . biological_region 56827 56828 0.999 - . logic_name=eponine scaffold_153 . repeat_region 56960 57011 . ? . description=trf scaffold_153 . biological_region 60820 60820 0.999 + . logic_name=eponine scaffold_153 . repeat_region 61178 61187 . ? . description=dust scaffold_153 . biological_region 62011 62011 0.999 + . logic_name=eponine scaffold_153 . biological_region 62054 62055 0.999 + . logic_name=eponine scaffold_153 . biological_region 62060 62067 0.999 + . logic_name=eponine scaffold_153 . repeat_region 62079 62142 . ? . description=dust scaffold_153 . biological_region 62120 62125 0.999 - . logic_name=eponine scaffold_153 . repeat_region 62273 62294 . ? . description=dust scaffold_153 . repeat_region 62273 62294 . ? . description=trf scaffold_153 . biological_region 62566 62573 0.999 - . logic_name=eponine scaffold_153 . biological_region 62587 62597 0.999 - . logic_name=eponine scaffold_153 . biological_region 64296 64300 0.999 + . logic_name=eponine scaffold_153 ensembl protein_coding_gene 61667 65504 . - . ID=Physo143832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530017;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 61667 65504 . - . ID=Physo143832;Parent=Physo143832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 61667 61714 . - 0 ID=Physo143832;Parent=Physo143832;rank=9 scaffold_153 . exon 61667 61714 . - . ID=Physo143832.9;Parent=Physo143832;constitutive=1;rank=9 scaffold_153 . CDS 61937 62322 . - 0 ID=Physo143832;Parent=Physo143832;rank=8 scaffold_153 . exon 61937 62322 . - . ID=Physo143832.8;Parent=Physo143832;constitutive=1;ensembl_phase=1;rank=8 scaffold_153 . CDS 62950 63183 . - 0 ID=Physo143832;Parent=Physo143832;rank=7 scaffold_153 . exon 62950 63183 . - . ID=Physo143832.7;Parent=Physo143832;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_153 . CDS 63261 63355 . - 0 ID=Physo143832;Parent=Physo143832;rank=6 scaffold_153 . exon 63261 63355 . - . ID=Physo143832.6;Parent=Physo143832;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_153 . CDS 63793 63845 . - 0 ID=Physo143832;Parent=Physo143832;rank=5 scaffold_153 . exon 63793 63845 . - . ID=Physo143832.5;Parent=Physo143832;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_153 . CDS 63947 64117 . - 0 ID=Physo143832;Parent=Physo143832;rank=4 scaffold_153 . exon 63947 64117 . - . ID=Physo143832.4;Parent=Physo143832;constitutive=1;rank=4 scaffold_153 . CDS 64138 65133 . - 0 ID=Physo143832;Parent=Physo143832;rank=3 scaffold_153 . exon 64138 65133 . - . ID=Physo143832.3;Parent=Physo143832;constitutive=1;rank=3 scaffold_153 . CDS 65182 65266 . - 0 ID=Physo143832;Parent=Physo143832;rank=2 scaffold_153 . CDS 65287 65504 . - 0 ID=Physo143832;Parent=Physo143832;rank=1 scaffold_153 . exon 65182 65266 . - . ID=Physo143832.2;Parent=Physo143832;constitutive=1;ensembl_phase=2;rank=2 scaffold_153 . exon 65287 65504 . - . ID=Physo143832.1;Parent=Physo143832;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_153 ensembl protein_coding_gene 65844 69796 . - . ID=Physo143833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530018;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 65844 69796 . - . ID=Physo143833;Parent=Physo143833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 65844 65980 . - 0 ID=Physo143833;Parent=Physo143833;rank=6 scaffold_153 . exon 65844 65980 . - . ID=Physo143833.6;Parent=Physo143833;constitutive=1;ensembl_phase=1;rank=6 scaffold_153 . CDS 66199 68110 . - 0 ID=Physo143833;Parent=Physo143833;rank=5 scaffold_153 . exon 66199 68110 . - . ID=Physo143833.5;Parent=Physo143833;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_153 . CDS 68183 68401 . - 0 ID=Physo143833;Parent=Physo143833;rank=4 scaffold_153 . exon 68183 68401 . - . ID=Physo143833.4;Parent=Physo143833;constitutive=1;rank=4 scaffold_153 . CDS 68760 68903 . - 0 ID=Physo143833;Parent=Physo143833;rank=3 scaffold_153 . exon 68760 68903 . - . ID=Physo143833.3;Parent=Physo143833;constitutive=1;rank=3 scaffold_153 . CDS 68964 69556 . - 0 ID=Physo143833;Parent=Physo143833;rank=2 scaffold_153 . exon 68964 69556 . - . ID=Physo143833.2;Parent=Physo143833;constitutive=1;ensembl_phase=1;rank=2 scaffold_153 . CDS 69784 69796 . - 0 ID=Physo143833;Parent=Physo143833;rank=1 scaffold_153 . exon 69784 69796 . - . ID=Physo143833.1;Parent=Physo143833;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_153 ensembl protein_coding_gene 72062 73597 . + . ID=Physo143834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530019;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 72062 73597 . + . ID=Physo143834;Parent=Physo143834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 72062 72476 . + 0 ID=Physo143834;Parent=Physo143834;rank=1 scaffold_153 . exon 72062 72476 . + . ID=Physo143834.1;Parent=Physo143834;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_153 . CDS 72501 73597 . + 0 ID=Physo143834;Parent=Physo143834;rank=2 scaffold_153 . exon 72501 73597 . + . ID=Physo143834.2;Parent=Physo143834;constitutive=1;ensembl_phase=1;rank=2 scaffold_153 . repeat_region 74109 74869 . - . description=GypsyPi-1c_I-int scaffold_153 . repeat_region 74906 75235 . - . description=GypsyPi-1c_I-int scaffold_153 . repeat_region 75335 75386 . ? . description=trf scaffold_153 . repeat_region 75388 75425 . ? . description=trf scaffold_153 . repeat_region 76454 76727 . + . description=Polinton-1_PI scaffold_153 . repeat_region 77104 77840 . - . description=Polinton-1_PI scaffold_153 . repeat_region 78047 78769 . - . description=Polinton-1_PI scaffold_153 . repeat_region 79296 79505 . + . description=Polinton-1_PI scaffold_153 . repeat_region 80458 80691 . - . description=Polinton-1_PI scaffold_153 . repeat_region 81334 81496 . ? . description=trf scaffold_153 . biological_region 81580 81581 0.999 + . logic_name=eponine scaffold_153 . biological_region 81615 81620 0.999 + . logic_name=eponine scaffold_153 . repeat_region 81624 82124 . ? . description=trf scaffold_153 . repeat_region 82193 82236 . ? . description=trf scaffold_153 . repeat_region 82294 82304 . ? . description=dust scaffold_153 . biological_region 82333 82341 0.999 + . logic_name=eponine scaffold_153 . biological_region 82374 82377 0.999 + . logic_name=eponine scaffold_153 . biological_region 82390 82392 0.999 + . logic_name=eponine scaffold_153 . biological_region 82452 82455 0.999 - . logic_name=eponine scaffold_153 . repeat_region 82762 82842 . ? . description=trf scaffold_153 . repeat_region 82866 82922 . ? . description=dust scaffold_153 . repeat_region 82957 82987 . ? . description=dust scaffold_153 . repeat_region 83102 83182 . ? . description=dust scaffold_153 ensembl protein_coding_gene 74195 74617 . - . ID=Physo109592;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1530002;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 74195 74617 . - . ID=Physo109592;Parent=Physo109592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 74195 74617 . - 0 ID=Physo109592;Parent=Physo109592;rank=1 scaffold_153 . exon 74195 74617 . - . ID=Physo109592.1;Parent=Physo109592;constitutive=1;rank=1 scaffold_153 . repeat_region 96356 96365 . ? . description=dust scaffold_153 ensembl protein_coding_gene 93667 93876 . + . ID=Physo124276;biotype=protein_coding;external_name=estExt_Genewise1.C_1530017;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 93667 93876 . + . ID=Physo124276;Parent=Physo124276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . exon 93667 93876 . + . ID=Physo124276.1;Parent=Physo124276;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_153 . CDS 93718 93789 . + 0 ID=Physo124276;Parent=Physo124276;rank=1 scaffold_153 . repeat_region 108858 109027 . + . description=(ATG)n scaffold_153 . repeat_region 108955 108980 . ? . description=trf scaffold_153 ensembl protein_coding_gene 110960 111724 . - . ID=Physo143836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1530021;logic_name=jgi_physo1_1 scaffold_153 ensembl transcript 110960 111724 . - . ID=Physo143836;Parent=Physo143836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_153 . CDS 110960 111724 . - 0 ID=Physo143836;Parent=Physo143836;rank=1 scaffold_153 . exon 110960 111724 . - . ID=Physo143836.1;Parent=Physo143836;constitutive=1;rank=1 scaffold_153 . repeat_region 111202 111253 . ? . description=dust scaffold_153 . repeat_region 115499 115521 . ? . description=dust scaffold_153 . repeat_region 118308 118485 . ? . description=dust scaffold_153 . repeat_region 119370 119613 . ? . description=dust scaffold_153 . repeat_region 120047 120359 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_152 1 122107 scaffold_152 . repeat_region 1 1672 . ? . description=trf scaffold_152 . repeat_region 3633 3687 . ? . description=dust scaffold_152 . repeat_region 7548 7555 . ? . description=dust scaffold_152 . biological_region 8375 8380 0.999 + . logic_name=eponine scaffold_152 . repeat_region 8782 8792 . ? . description=dust scaffold_152 ensembl protein_coding_gene 2161 3618 . - . ID=Physo143794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520001;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 2161 3618 . - . ID=Physo143794;Parent=Physo143794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 2161 2215 . - 0 ID=Physo143794;Parent=Physo143794;rank=4 scaffold_152 . exon 2161 2215 . - . ID=Physo143794.4;Parent=Physo143794;constitutive=1;ensembl_phase=2;rank=4 scaffold_152 . CDS 2268 2542 . - 0 ID=Physo143794;Parent=Physo143794;rank=3 scaffold_152 . exon 2268 2542 . - . ID=Physo143794.3;Parent=Physo143794;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_152 . CDS 2704 2828 . - 0 ID=Physo143794;Parent=Physo143794;rank=2 scaffold_152 . exon 2704 2828 . - . ID=Physo143794.2;Parent=Physo143794;constitutive=1;ensembl_phase=1;rank=2 scaffold_152 . CDS 2976 3618 . - 0 ID=Physo143794;Parent=Physo143794;rank=1 scaffold_152 . exon 2976 3618 . - . ID=Physo143794.1;Parent=Physo143794;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_152 ensembl protein_coding_gene 7641 8522 . - . ID=Physo143795;biotype=protein_coding;description=PsAvh29 [Source:UniProtKB/TrEMBL%3BAcc:E0W5P1];external_name=estExt_fgenesh1_pg.C_1520002;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 7641 8522 . - . ID=Physo143795;Parent=Physo143795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 7641 8522 . - 0 ID=Physo143795;Parent=Physo143795;rank=1 scaffold_152 . exon 7641 8522 . - . ID=Physo143795.1;Parent=Physo143795;constitutive=1;rank=1 scaffold_152 ensembl protein_coding_gene 12834 13356 . - . ID=Physo143796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520003;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 12834 13356 . - . ID=Physo143796;Parent=Physo143796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 12834 13004 . - 0 ID=Physo143796;Parent=Physo143796;rank=3 scaffold_152 . exon 12834 13004 . - . ID=Physo143796.3;Parent=Physo143796;constitutive=1;rank=3 scaffold_152 . CDS 13118 13267 . - 0 ID=Physo143796;Parent=Physo143796;rank=2 scaffold_152 . exon 13118 13267 . - . ID=Physo143796.2;Parent=Physo143796;constitutive=1;rank=2 scaffold_152 . CDS 13291 13356 . - 0 ID=Physo143796;Parent=Physo143796;rank=1 scaffold_152 . exon 13291 13356 . - . ID=Physo143796.1;Parent=Physo143796;constitutive=1;rank=1 scaffold_152 . repeat_region 22704 22723 . ? . description=trf scaffold_152 . repeat_region 22919 22926 . ? . description=dust scaffold_152 . biological_region 23741 23741 0.999 + . logic_name=eponine scaffold_152 . repeat_region 24750 24788 . ? . description=trf scaffold_152 . biological_region 24830 24834 0.999 - . logic_name=eponine scaffold_152 . biological_region 24853 24856 0.999 - . logic_name=eponine scaffold_152 . biological_region 24961 24970 0.999 - . logic_name=eponine scaffold_152 . repeat_region 25849 25983 . - . description=GypsyPi-1c_I-int scaffold_152 . biological_region 26036 26040 0.999 - . logic_name=eponine scaffold_152 . repeat_region 26400 26440 . ? . description=trf scaffold_152 . repeat_region 26492 29341 . - . description=GypsyPi-1c_I-int scaffold_152 . biological_region 27052 27056 0.999 - . logic_name=eponine scaffold_152 ensembl protein_coding_gene 27842 28206 . - . ID=Physo124234;biotype=protein_coding;external_name=estExt_Genewise1.C_1520001;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 27842 28206 . - . ID=Physo124234;Parent=Physo124234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 27842 28048 . - 0 ID=Physo124234;Parent=Physo124234;rank=1 scaffold_152 . exon 27842 28206 . - . ID=Physo124234.1;Parent=Physo124234;constitutive=1;ensembl_phase=-1;rank=1 scaffold_152 ensembl protein_coding_gene 24672 26510 . + . ID=Physo143797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520004;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 24672 26510 . + . ID=Physo143797;Parent=Physo143797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 24672 25667 . + 0 ID=Physo143797;Parent=Physo143797;rank=1 scaffold_152 . exon 24672 25667 . + . ID=Physo143797.1;Parent=Physo143797;constitutive=1;rank=1 scaffold_152 . CDS 26040 26510 . + 0 ID=Physo143797;Parent=Physo143797;rank=2 scaffold_152 . exon 26040 26510 . + . ID=Physo143797.2;Parent=Physo143797;constitutive=1;rank=2 scaffold_152 ensembl protein_coding_gene 28403 32665 . - . ID=Physo143798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520005;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 28403 32665 . - . ID=Physo143798;Parent=Physo143798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 28403 29693 . - 0 ID=Physo143798;Parent=Physo143798;rank=6 scaffold_152 . exon 28403 29693 . - . ID=Physo143798.6;Parent=Physo143798;constitutive=1;ensembl_phase=2;rank=6 scaffold_152 . CDS 29732 30179 . - 0 ID=Physo143798;Parent=Physo143798;rank=5 scaffold_152 . exon 29732 30179 . - . ID=Physo143798.5;Parent=Physo143798;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_152 . CDS 30529 30760 . - 0 ID=Physo143798;Parent=Physo143798;rank=4 scaffold_152 . exon 30529 30760 . - . ID=Physo143798.4;Parent=Physo143798;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_152 . CDS 30876 31154 . - 0 ID=Physo143798;Parent=Physo143798;rank=3 scaffold_152 . exon 30876 31154 . - . ID=Physo143798.3;Parent=Physo143798;constitutive=1;rank=3 scaffold_152 . CDS 31194 31520 . - 0 ID=Physo143798;Parent=Physo143798;rank=2 scaffold_152 . exon 31194 31520 . - . ID=Physo143798.2;Parent=Physo143798;constitutive=1;rank=2 scaffold_152 . CDS 32327 32665 . - 0 ID=Physo143798;Parent=Physo143798;rank=1 scaffold_152 . exon 32327 32665 . - . ID=Physo143798.1;Parent=Physo143798;constitutive=1;rank=1 scaffold_152 . repeat_region 38436 38485 . ? . description=dust scaffold_152 . repeat_region 40237 40251 . ? . description=dust scaffold_152 . biological_region 46016 46020 0.999 - . logic_name=eponine scaffold_152 . biological_region 46047 46049 0.999 - . logic_name=eponine scaffold_152 ensembl protein_coding_gene 45851 46832 . + . ID=Physo143800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520007;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 45851 46832 . + . ID=Physo143800;Parent=Physo143800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 45851 46260 . + 0 ID=Physo143800;Parent=Physo143800;rank=1 scaffold_152 . exon 45851 46260 . + . ID=Physo143800.1;Parent=Physo143800;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_152 . CDS 46334 46437 . + 0 ID=Physo143800;Parent=Physo143800;rank=2 scaffold_152 . exon 46334 46437 . + . ID=Physo143800.2;Parent=Physo143800;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_152 . CDS 46509 46616 . + 0 ID=Physo143800;Parent=Physo143800;rank=3 scaffold_152 . exon 46509 46616 . + . ID=Physo143800.3;Parent=Physo143800;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_152 . CDS 46696 46832 . + 0 ID=Physo143800;Parent=Physo143800;rank=4 scaffold_152 . exon 46696 46832 . + . ID=Physo143800.4;Parent=Physo143800;constitutive=1;ensembl_phase=1;rank=4 scaffold_152 ensembl protein_coding_gene 46932 48180 . - . ID=Physo143801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520008;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 46932 48180 . - . ID=Physo143801;Parent=Physo143801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . exon 46932 48180 . - . ID=Physo143801.1;Parent=Physo143801;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_152 . CDS 46999 48180 . - 0 ID=Physo143801;Parent=Physo143801;rank=1 scaffold_152 ensembl protein_coding_gene 41533 42881 . + . ID=Physo158822;biotype=protein_coding;external_name=C_scaffold_152000001;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 41533 42881 . + . ID=Physo158822;Parent=Physo158822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 41533 41637 . + 0 ID=Physo158822;Parent=Physo158822;rank=1 scaffold_152 . exon 41533 41637 . + . ID=Physo158822.1;Parent=Physo158822;constitutive=1;rank=1 scaffold_152 . CDS 41710 41861 . + 0 ID=Physo158822;Parent=Physo158822;rank=2 scaffold_152 . exon 41710 41861 . + . ID=Physo158822.2;Parent=Physo158822;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_152 . CDS 41954 42228 . + 0 ID=Physo158822;Parent=Physo158822;rank=3 scaffold_152 . exon 41954 42228 . + . ID=Physo158822.3;Parent=Physo158822;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_152 . CDS 42296 42442 . + 0 ID=Physo158822;Parent=Physo158822;rank=4 scaffold_152 . exon 42296 42442 . + . ID=Physo158822.4;Parent=Physo158822;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_152 . CDS 42540 42625 . + 0 ID=Physo158822;Parent=Physo158822;rank=5 scaffold_152 . exon 42540 42625 . + . ID=Physo158822.5;Parent=Physo158822;constitutive=1;ensembl_phase=1;rank=5 scaffold_152 . CDS 42705 42881 . + 0 ID=Physo158822;Parent=Physo158822;rank=6 scaffold_152 . exon 42705 42881 . + . ID=Physo158822.6;Parent=Physo158822;constitutive=1;rank=6 scaffold_152 ensembl protein_coding_gene 49219 50101 . - . ID=Physo124235;biotype=protein_coding;external_name=estExt_Genewise1.C_1520002;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 49219 50101 . - . ID=Physo124235;Parent=Physo124235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . exon 49219 49482 . - . ID=Physo124235.2;Parent=Physo124235;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_152 . CDS 49233 49482 . - 0 ID=Physo124235;Parent=Physo124235;rank=2 scaffold_152 . CDS 49549 49802 . - 0 ID=Physo124235;Parent=Physo124235;rank=1 scaffold_152 . exon 49549 50101 . - . ID=Physo124235.1;Parent=Physo124235;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_152 ensembl protein_coding_gene 56155 56963 . + . ID=Physo124242;biotype=protein_coding;external_name=estExt_Genewise1.C_1520009;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 56155 56963 . + . ID=Physo124242;Parent=Physo124242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . exon 56155 56963 . + . ID=Physo124242.1;Parent=Physo124242;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_152 . CDS 56251 56676 . + 0 ID=Physo124242;Parent=Physo124242;rank=1 scaffold_152 ensembl protein_coding_gene 53670 54467 . + . ID=Physo143802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520009;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 53670 54467 . + . ID=Physo143802;Parent=Physo143802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 53670 53729 . + 0 ID=Physo143802;Parent=Physo143802;rank=1 scaffold_152 . exon 53670 53729 . + . ID=Physo143802.1;Parent=Physo143802;constitutive=1;rank=1 scaffold_152 . CDS 53789 54185 . + 0 ID=Physo143802;Parent=Physo143802;rank=2 scaffold_152 . exon 53789 54185 . + . ID=Physo143802.2;Parent=Physo143802;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_152 . CDS 54361 54467 . + 0 ID=Physo143802;Parent=Physo143802;rank=3 scaffold_152 . exon 54361 54467 . + . ID=Physo143802.3;Parent=Physo143802;constitutive=1;ensembl_phase=1;rank=3 scaffold_152 . repeat_region 64097 64208 . ? . description=dust scaffold_152 . repeat_region 65282 65302 . ? . description=dust scaffold_152 . repeat_region 65607 65614 . ? . description=dust scaffold_152 . biological_region 65958 65965 0.999 + . logic_name=eponine scaffold_152 . repeat_region 68223 68250 . ? . description=trf scaffold_152 ensembl protein_coding_gene 74230 75308 . + . ID=Physo143803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520010;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 74230 75308 . + . ID=Physo143803;Parent=Physo143803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 74230 74274 . + 0 ID=Physo143803;Parent=Physo143803;rank=1 scaffold_152 . exon 74230 74274 . + . ID=Physo143803.1;Parent=Physo143803;constitutive=1;rank=1 scaffold_152 . CDS 74451 75224 . + 0 ID=Physo143803;Parent=Physo143803;rank=2 scaffold_152 . exon 74451 75224 . + . ID=Physo143803.2;Parent=Physo143803;constitutive=1;rank=2 scaffold_152 . CDS 75294 75308 . + 0 ID=Physo143803;Parent=Physo143803;rank=3 scaffold_152 . repeat_region 80099 80107 . ? . description=dust scaffold_152 . repeat_region 80958 80966 . ? . description=dust scaffold_152 ensembl protein_coding_gene 77932 78195 . + . ID=Physo124246;biotype=protein_coding;external_name=estExt_Genewise1.C_1520013;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 77932 78195 . + . ID=Physo124246;Parent=Physo124246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . exon 77932 78195 . + . ID=Physo124246.1;Parent=Physo124246;constitutive=1;ensembl_phase=-1;rank=1 scaffold_152 . CDS 77971 78195 . + 0 ID=Physo124246;Parent=Physo124246;rank=1 scaffold_152 . exon 75294 75308 . + . ID=Physo143803.3;Parent=Physo143803;constitutive=1;rank=3 scaffold_152 ensembl protein_coding_gene 83752 86375 . + . ID=Physo143804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520011;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 83752 86375 . + . ID=Physo143804;Parent=Physo143804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 83752 84099 . + 0 ID=Physo143804;Parent=Physo143804;rank=1 scaffold_152 . exon 83752 84099 . + . ID=Physo143804.1;Parent=Physo143804;constitutive=1;rank=1 scaffold_152 . CDS 84166 86328 . + 0 ID=Physo143804;Parent=Physo143804;rank=2 scaffold_152 . exon 84166 86375 . + . ID=Physo143804.2;Parent=Physo143804;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_152 . biological_region 86468 86477 0.999 + . logic_name=eponine scaffold_152 . biological_region 86518 86521 0.999 + . logic_name=eponine scaffold_152 . biological_region 86591 86595 0.999 + . logic_name=eponine scaffold_152 . biological_region 87047 87054 0.999 + . logic_name=eponine scaffold_152 . biological_region 87737 87739 0.999 + . logic_name=eponine scaffold_152 . repeat_region 87853 87878 . ? . description=trf scaffold_152 . biological_region 88676 88678 0.999 + . logic_name=eponine scaffold_152 . biological_region 89945 89947 0.999 - . logic_name=eponine scaffold_152 . biological_region 91177 91179 0.999 + . logic_name=eponine scaffold_152 . biological_region 91413 91414 0.999 - . logic_name=eponine scaffold_152 . biological_region 91433 91435 0.999 - . logic_name=eponine scaffold_152 . biological_region 91845 91851 0.999 - . logic_name=eponine scaffold_152 . biological_region 92208 92212 0.999 + . logic_name=eponine scaffold_152 . biological_region 92288 92293 0.999 - . logic_name=eponine scaffold_152 . biological_region 92305 92308 0.999 + . logic_name=eponine scaffold_152 ensembl protein_coding_gene 92208 93167 . + . ID=Physo109590;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1520001;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 92208 93167 . + . ID=Physo109590;Parent=Physo109590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 92208 92954 . + 0 ID=Physo109590;Parent=Physo109590;rank=1 scaffold_152 . exon 92208 93167 . + . ID=Physo109590.1;Parent=Physo109590;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_152 ensembl protein_coding_gene 87596 90727 . - . ID=Physo143806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520013;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 87596 90727 . - . ID=Physo143806;Parent=Physo143806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . exon 87596 89723 . - . ID=Physo143806.4;Parent=Physo143806;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_152 . CDS 87708 89723 . - 0 ID=Physo143806;Parent=Physo143806;rank=4 scaffold_152 . CDS 89819 90256 . - 0 ID=Physo143806;Parent=Physo143806;rank=3 scaffold_152 . exon 89819 90256 . - . ID=Physo143806.3;Parent=Physo143806;constitutive=1;rank=3 scaffold_152 . CDS 90338 90550 . - 0 ID=Physo143806;Parent=Physo143806;rank=2 scaffold_152 . exon 90338 90550 . - . ID=Physo143806.2;Parent=Physo143806;constitutive=1;rank=2 scaffold_152 . CDS 90614 90727 . - 0 ID=Physo143806;Parent=Physo143806;rank=1 scaffold_152 . exon 90614 90727 . - . ID=Physo143806.1;Parent=Physo143806;constitutive=1;rank=1 scaffold_152 ensembl protein_coding_gene 90930 92012 . - . ID=Physo143807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520014;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 90930 92012 . - . ID=Physo143807;Parent=Physo143807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 90930 92012 . - 0 ID=Physo143807;Parent=Physo143807;rank=1 scaffold_152 . exon 90930 92012 . - . ID=Physo143807.1;Parent=Physo143807;constitutive=1;rank=1 scaffold_152 ensembl protein_coding_gene 93478 95399 . - . ID=Physo143809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520016;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 93478 95399 . - . ID=Physo143809;Parent=Physo143809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 93478 93615 . - 0 ID=Physo143809;Parent=Physo143809;rank=6 scaffold_152 . exon 93478 93615 . - . ID=Physo143809.6;Parent=Physo143809;constitutive=1;rank=6 scaffold_152 . CDS 93688 93780 . - 0 ID=Physo143809;Parent=Physo143809;rank=5 scaffold_152 . exon 93688 93780 . - . ID=Physo143809.5;Parent=Physo143809;constitutive=1;rank=5 scaffold_152 . CDS 93865 94272 . - 0 ID=Physo143809;Parent=Physo143809;rank=4 scaffold_152 . exon 93865 94272 . - . ID=Physo143809.4;Parent=Physo143809;constitutive=1;rank=4 scaffold_152 . CDS 94342 94759 . - 0 ID=Physo143809;Parent=Physo143809;rank=3 scaffold_152 . CDS 94842 95188 . - 0 ID=Physo143809;Parent=Physo143809;rank=2 scaffold_152 . CDS 95280 95399 . - 0 ID=Physo143809;Parent=Physo143809;rank=1 scaffold_152 ensembl protein_coding_gene 86480 87464 . - . ID=Physo158823;biotype=protein_coding;external_name=C_scaffold_152000002;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 86480 87464 . - . ID=Physo158823;Parent=Physo158823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 86480 86780 . - 0 ID=Physo158823;Parent=Physo158823;rank=2 scaffold_152 . exon 86480 86780 . - . ID=Physo158823.2;Parent=Physo158823;constitutive=1;ensembl_phase=2;rank=2 scaffold_152 . CDS 86854 87464 . - 0 ID=Physo158823;Parent=Physo158823;rank=1 scaffold_152 . exon 86854 87464 . - . ID=Physo158823.1;Parent=Physo158823;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_152 . repeat_region 99424 99455 . ? . description=dust scaffold_152 . exon 94342 94759 . - . ID=Physo143809.3;Parent=Physo143809;constitutive=1;ensembl_phase=2;rank=3 scaffold_152 . exon 94842 95188 . - . ID=Physo143809.2;Parent=Physo143809;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_152 . exon 95280 95399 . - . ID=Physo143809.1;Parent=Physo143809;constitutive=1;rank=1 scaffold_152 ensembl protein_coding_gene 96058 97994 . - . ID=Physo143810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520017;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 96058 97994 . - . ID=Physo143810;Parent=Physo143810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . exon 96058 96074 . - . ID=Physo143810.4;Parent=Physo143810;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_152 . CDS 96059 96074 . - 0 ID=Physo143810;Parent=Physo143810;rank=4 scaffold_152 . CDS 96151 96215 . - 0 ID=Physo143810;Parent=Physo143810;rank=3 scaffold_152 . exon 96151 96215 . - . ID=Physo143810.3;Parent=Physo143810;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_152 . CDS 96241 96256 . - 0 ID=Physo143810;Parent=Physo143810;rank=2 scaffold_152 . exon 96241 96256 . - . ID=Physo143810.2;Parent=Physo143810;constitutive=1;ensembl_phase=2;rank=2 scaffold_152 . CDS 96304 97994 . - 0 ID=Physo143810;Parent=Physo143810;rank=1 scaffold_152 . exon 96304 97994 . - . ID=Physo143810.1;Parent=Physo143810;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_152 . biological_region 103797 103799 0.999 - . logic_name=eponine scaffold_152 . repeat_region 107609 107628 . ? . description=trf scaffold_152 . biological_region 109283 109287 0.999 + . logic_name=eponine scaffold_152 . repeat_region 110084 110103 . ? . description=trf scaffold_152 . biological_region 110449 110451 0.999 - . logic_name=eponine scaffold_152 . repeat_region 111592 111624 . ? . description=trf scaffold_152 ensembl protein_coding_gene 103629 104918 . - . ID=Physo143811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520018;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 103629 104918 . - . ID=Physo143811;Parent=Physo143811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 103629 104918 . - 0 ID=Physo143811;Parent=Physo143811;rank=1 scaffold_152 . exon 103629 104918 . - . ID=Physo143811.1;Parent=Physo143811;constitutive=1;rank=1 scaffold_152 ensembl protein_coding_gene 106215 107658 . + . ID=Physo143812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520019;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 106215 107658 . + . ID=Physo143812;Parent=Physo143812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 106215 106318 . + 0 ID=Physo143812;Parent=Physo143812;rank=1 scaffold_152 . exon 106215 106318 . + . ID=Physo143812.1;Parent=Physo143812;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_152 . CDS 106990 107291 . + 0 ID=Physo143812;Parent=Physo143812;rank=2 scaffold_152 . exon 106990 107291 . + . ID=Physo143812.2;Parent=Physo143812;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_152 . CDS 107372 107487 . + 0 ID=Physo143812;Parent=Physo143812;rank=3 scaffold_152 . exon 107372 107658 . + . ID=Physo143812.3;Parent=Physo143812;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_152 . repeat_region 113486 113498 . ? . description=dust scaffold_152 ensembl protein_coding_gene 120242 120918 . - . ID=Physo143814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520021;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 120242 120918 . - . ID=Physo143814;Parent=Physo143814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 120242 120677 . - 0 ID=Physo143814;Parent=Physo143814;rank=2 scaffold_152 . exon 120242 120677 . - . ID=Physo143814.2;Parent=Physo143814;constitutive=1;ensembl_phase=2;rank=2 scaffold_152 . CDS 120761 120918 . - 0 ID=Physo143814;Parent=Physo143814;rank=1 scaffold_152 . exon 120761 120918 . - . ID=Physo143814.1;Parent=Physo143814;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_152 ensembl protein_coding_gene 121189 122087 . + . ID=Physo143815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1520022;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 121189 122087 . + . ID=Physo143815;Parent=Physo143815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 121189 122085 . + 0 ID=Physo143815;Parent=Physo143815;rank=1 scaffold_152 . exon 121189 122087 . + . ID=Physo143815.1;Parent=Physo143815;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_152 ensembl protein_coding_gene 116385 119305 . - . ID=Physo158827;biotype=protein_coding;external_name=C_scaffold_152000006;logic_name=jgi_physo1_1 scaffold_152 ensembl transcript 116385 119305 . - . ID=Physo158827;Parent=Physo158827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_152 . CDS 116385 116408 . - 0 ID=Physo158827;Parent=Physo158827;rank=9 scaffold_152 . exon 116385 116408 . - . ID=Physo158827.9;Parent=Physo158827;constitutive=1;rank=9 scaffold_152 . CDS 116480 116633 . - 0 ID=Physo158827;Parent=Physo158827;rank=8 scaffold_152 . exon 116480 116633 . - . ID=Physo158827.8;Parent=Physo158827;constitutive=1;ensembl_phase=2;rank=8 scaffold_152 . CDS 116712 117010 . - 0 ID=Physo158827;Parent=Physo158827;rank=7 scaffold_152 . exon 116712 117010 . - . ID=Physo158827.7;Parent=Physo158827;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_152 . CDS 117368 117682 . - 0 ID=Physo158827;Parent=Physo158827;rank=6 scaffold_152 . exon 117368 117682 . - . ID=Physo158827.6;Parent=Physo158827;constitutive=1;rank=6 scaffold_152 . CDS 117800 117969 . - 0 ID=Physo158827;Parent=Physo158827;rank=5 scaffold_152 . exon 117800 117969 . - . ID=Physo158827.5;Parent=Physo158827;constitutive=1;ensembl_phase=1;rank=5 scaffold_152 . CDS 118294 118420 . - 0 ID=Physo158827;Parent=Physo158827;rank=4 scaffold_152 . exon 118294 118420 . - . ID=Physo158827.4;Parent=Physo158827;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_152 . CDS 118454 118881 . - 0 ID=Physo158827;Parent=Physo158827;rank=3 scaffold_152 . exon 118454 118881 . - . ID=Physo158827.3;Parent=Physo158827;constitutive=1;ensembl_phase=1;rank=3 scaffold_152 . CDS 118906 119070 . - 0 ID=Physo158827;Parent=Physo158827;rank=2 scaffold_152 . exon 118906 119070 . - . ID=Physo158827.2;Parent=Physo158827;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_152 . CDS 119149 119305 . - 0 ID=Physo158827;Parent=Physo158827;rank=1 scaffold_152 . exon 119149 119305 . - . ID=Physo158827.1;Parent=Physo158827;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_150 1 124796 scaffold_150 . repeat_region 352 359 . ? . description=dust scaffold_150 . repeat_region 404 506 . ? . description=trf scaffold_150 . repeat_region 1068 1114 . ? . description=trf scaffold_150 . biological_region 1277 1282 0.999 - . logic_name=eponine scaffold_150 . biological_region 2734 2738 0.999 + . logic_name=eponine scaffold_150 . repeat_region 5681 6066 . + . description=Gypsy-2-I_PI-int scaffold_150 ensembl protein_coding_gene 280 4129 . + . ID=Physo143740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500001;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 280 4129 . + . ID=Physo143740;Parent=Physo143740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 280 287 . + 0 ID=Physo143740;Parent=Physo143740;rank=1 scaffold_150 . exon 280 287 . + . ID=Physo143740.1;Parent=Physo143740;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_150 . CDS 404 411 . + 0 ID=Physo143740;Parent=Physo143740;rank=2 scaffold_150 . exon 404 411 . + . ID=Physo143740.2;Parent=Physo143740;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_150 . CDS 589 775 . + 0 ID=Physo143740;Parent=Physo143740;rank=3 scaffold_150 . exon 589 775 . + . ID=Physo143740.3;Parent=Physo143740;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_150 . CDS 1149 1244 . + 0 ID=Physo143740;Parent=Physo143740;rank=4 scaffold_150 . exon 1149 1244 . + . ID=Physo143740.4;Parent=Physo143740;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_150 . CDS 1757 2271 . + 0 ID=Physo143740;Parent=Physo143740;rank=5 scaffold_150 . exon 1757 2271 . + . ID=Physo143740.5;Parent=Physo143740;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_150 . CDS 2320 3072 . + 0 ID=Physo143740;Parent=Physo143740;rank=6 scaffold_150 . exon 2320 3072 . + . ID=Physo143740.6;Parent=Physo143740;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_150 . CDS 3390 4129 . + 0 ID=Physo143740;Parent=Physo143740;rank=7 scaffold_150 . exon 3390 4129 . + . ID=Physo143740.7;Parent=Physo143740;constitutive=1;ensembl_phase=1;rank=7 scaffold_150 ensembl protein_coding_gene 5516 8504 . + . ID=Physo143741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500002;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 5516 8504 . + . ID=Physo143741;Parent=Physo143741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 5516 5612 . + 0 ID=Physo143741;Parent=Physo143741;rank=1 scaffold_150 . exon 5516 5612 . + . ID=Physo143741.1;Parent=Physo143741;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_150 . CDS 5733 6693 . + 0 ID=Physo143741;Parent=Physo143741;rank=2 scaffold_150 . exon 5733 6693 . + . ID=Physo143741.2;Parent=Physo143741;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_150 . CDS 7326 7843 . + 0 ID=Physo143741;Parent=Physo143741;rank=3 scaffold_150 . exon 7326 7843 . + . ID=Physo143741.3;Parent=Physo143741;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_150 . CDS 8036 8215 . + 0 ID=Physo143741;Parent=Physo143741;rank=4 scaffold_150 . exon 8036 8215 . + . ID=Physo143741.4;Parent=Physo143741;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_150 . CDS 8269 8504 . + 0 ID=Physo143741;Parent=Physo143741;rank=5 scaffold_150 . exon 8269 8504 . + . ID=Physo143741.5;Parent=Physo143741;constitutive=1;ensembl_phase=1;rank=5 scaffold_150 ensembl protein_coding_gene 9498 10705 . + . ID=Physo143742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500003;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 9498 10705 . + . ID=Physo143742;Parent=Physo143742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 9498 10029 . + 0 ID=Physo143742;Parent=Physo143742;rank=1 scaffold_150 . exon 9498 10029 . + . ID=Physo143742.1;Parent=Physo143742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_150 . CDS 10186 10595 . + 0 ID=Physo143742;Parent=Physo143742;rank=2 scaffold_150 . exon 10186 10705 . + . ID=Physo143742.2;Parent=Physo143742;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_150 ensembl protein_coding_gene 12806 13849 . + . ID=Physo143743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500004;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 12806 13849 . + . ID=Physo143743;Parent=Physo143743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 12806 13849 . + 0 ID=Physo143743;Parent=Physo143743;rank=1 scaffold_150 . exon 12806 13849 . + . ID=Physo143743.1;Parent=Physo143743;constitutive=1;rank=1 scaffold_150 ensembl protein_coding_gene 17472 17927 . - . ID=Physo143744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500005;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 17472 17927 . - . ID=Physo143744;Parent=Physo143744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 17472 17927 . - 0 ID=Physo143744;Parent=Physo143744;rank=1 scaffold_150 . exon 17472 17927 . - . ID=Physo143744.1;Parent=Physo143744;constitutive=1;rank=1 scaffold_150 . biological_region 24644 24647 0.999 + . logic_name=eponine scaffold_150 . repeat_region 26672 26699 . ? . description=trf scaffold_150 . repeat_region 26863 26909 . ? . description=trf scaffold_150 . repeat_region 28775 28782 . ? . description=dust scaffold_150 ensembl protein_coding_gene 25726 26955 . + . ID=Physo109585;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1500001;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 25726 26955 . + . ID=Physo109585;Parent=Physo109585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . exon 25726 26955 . + . ID=Physo109585.1;Parent=Physo109585;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_150 . CDS 25755 26819 . + 0 ID=Physo109585;Parent=Physo109585;rank=1 scaffold_150 ensembl protein_coding_gene 20500 21432 . - . ID=Physo143745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500006;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 20500 21432 . - . ID=Physo143745;Parent=Physo143745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 20500 21432 . - 0 ID=Physo143745;Parent=Physo143745;rank=1 scaffold_150 . exon 20500 21432 . - . ID=Physo143745.1;Parent=Physo143745;constitutive=1;rank=1 scaffold_150 ensembl protein_coding_gene 22366 24768 . - . ID=Physo143746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500007;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 22366 24768 . - . ID=Physo143746;Parent=Physo143746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 22366 22386 . - 0 ID=Physo143746;Parent=Physo143746;rank=3 scaffold_150 . exon 22366 22386 . - . ID=Physo143746.3;Parent=Physo143746;constitutive=1;rank=3 scaffold_150 . CDS 22462 24459 . - 0 ID=Physo143746;Parent=Physo143746;rank=2 scaffold_150 . exon 22462 24459 . - . ID=Physo143746.2;Parent=Physo143746;constitutive=1;rank=2 scaffold_150 . CDS 24616 24768 . - 0 ID=Physo143746;Parent=Physo143746;rank=1 scaffold_150 . exon 24616 24768 . - . ID=Physo143746.1;Parent=Physo143746;constitutive=1;rank=1 scaffold_150 ensembl protein_coding_gene 29891 31402 . - . ID=Physo109586;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1500002;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 29891 31402 . - . ID=Physo109586;Parent=Physo109586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 29891 31402 . - 0 ID=Physo109586;Parent=Physo109586;rank=1 scaffold_150 . exon 29891 31402 . - . ID=Physo109586.1;Parent=Physo109586;constitutive=1;rank=1 scaffold_150 ensembl protein_coding_gene 31549 33007 . - . ID=Physo143749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500010;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 31549 33007 . - . ID=Physo143749;Parent=Physo143749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . exon 31549 31906 . - . ID=Physo143749.3;Parent=Physo143749;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_150 . CDS 31550 31906 . - 0 ID=Physo143749;Parent=Physo143749;rank=3 scaffold_150 . CDS 31941 32567 . - 0 ID=Physo143749;Parent=Physo143749;rank=2 scaffold_150 . exon 31941 32567 . - . ID=Physo143749.2;Parent=Physo143749;constitutive=1;rank=2 scaffold_150 . CDS 32633 33007 . - 0 ID=Physo143749;Parent=Physo143749;rank=1 scaffold_150 . exon 32633 33007 . - . ID=Physo143749.1;Parent=Physo143749;constitutive=1;rank=1 scaffold_150 ensembl protein_coding_gene 35898 37528 . - . ID=Physo143750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500011;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 35898 37528 . - . ID=Physo143750;Parent=Physo143750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 35898 36253 . - 0 ID=Physo143750;Parent=Physo143750;rank=4 scaffold_150 . exon 35898 36253 . - . ID=Physo143750.4;Parent=Physo143750;constitutive=1;ensembl_phase=1;rank=4 scaffold_150 . CDS 36327 36467 . - 0 ID=Physo143750;Parent=Physo143750;rank=3 scaffold_150 . exon 36327 36467 . - . ID=Physo143750.3;Parent=Physo143750;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_150 . CDS 36843 37135 . - 0 ID=Physo143750;Parent=Physo143750;rank=2 scaffold_150 . exon 36843 37135 . - . ID=Physo143750.2;Parent=Physo143750;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_150 . CDS 37254 37528 . - 0 ID=Physo143750;Parent=Physo143750;rank=1 scaffold_150 . exon 37254 37528 . - . ID=Physo143750.1;Parent=Physo143750;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_150 . repeat_region 40843 40893 . ? . description=trf scaffold_150 . repeat_region 42640 42647 . ? . description=dust scaffold_150 ensembl protein_coding_gene 39331 41801 . + . ID=Physo143751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500012;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 39331 41801 . + . ID=Physo143751;Parent=Physo143751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 39331 39454 . + 0 ID=Physo143751;Parent=Physo143751;rank=1 scaffold_150 . exon 39331 39454 . + . ID=Physo143751.1;Parent=Physo143751;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_150 . CDS 39493 41801 . + 0 ID=Physo143751;Parent=Physo143751;rank=2 scaffold_150 . exon 39493 41801 . + . ID=Physo143751.2;Parent=Physo143751;constitutive=1;ensembl_phase=1;rank=2 scaffold_150 ensembl protein_coding_gene 42658 46992 . + . ID=Physo143752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500013;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 42658 46992 . + . ID=Physo143752;Parent=Physo143752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . exon 42658 42930 . + . ID=Physo143752.1;Parent=Physo143752;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_150 . CDS 42731 42930 . + 0 ID=Physo143752;Parent=Physo143752;rank=1 scaffold_150 . CDS 43251 43620 . + 0 ID=Physo143752;Parent=Physo143752;rank=2 scaffold_150 . exon 43251 43620 . + . ID=Physo143752.2;Parent=Physo143752;constitutive=1;ensembl_phase=2;rank=2 scaffold_150 . CDS 43772 43806 . + 0 ID=Physo143752;Parent=Physo143752;rank=3 scaffold_150 . exon 43772 43806 . + . ID=Physo143752.3;Parent=Physo143752;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_150 . CDS 43837 44316 . + 0 ID=Physo143752;Parent=Physo143752;rank=4 scaffold_150 . exon 43837 44316 . + . ID=Physo143752.4;Parent=Physo143752;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_150 . CDS 44424 46992 . + 0 ID=Physo143752;Parent=Physo143752;rank=5 scaffold_150 . exon 44424 46992 . + . ID=Physo143752.5;Parent=Physo143752;constitutive=1;ensembl_phase=2;rank=5 scaffold_150 ensembl protein_coding_gene 47853 50132 . + . ID=Physo143753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500014;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 47853 50132 . + . ID=Physo143753;Parent=Physo143753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 47853 47900 . + 0 ID=Physo143753;Parent=Physo143753;rank=1 scaffold_150 . exon 47853 47900 . + . ID=Physo143753.1;Parent=Physo143753;constitutive=1;rank=1 scaffold_150 . CDS 47920 48543 . + 0 ID=Physo143753;Parent=Physo143753;rank=2 scaffold_150 . exon 47920 48543 . + . ID=Physo143753.2;Parent=Physo143753;constitutive=1;rank=2 scaffold_150 . CDS 48583 48648 . + 0 ID=Physo143753;Parent=Physo143753;rank=3 scaffold_150 . CDS 48687 49058 . + 0 ID=Physo143753;Parent=Physo143753;rank=4 scaffold_150 . CDS 49484 50083 . + 0 ID=Physo143753;Parent=Physo143753;rank=5 scaffold_150 . CDS 50118 50132 . + 0 ID=Physo143753;Parent=Physo143753;rank=6 scaffold_150 . biological_region 51586 51590 0.999 - . logic_name=eponine scaffold_150 . biological_region 51819 51822 0.999 - . logic_name=eponine scaffold_150 . biological_region 53670 53674 0.999 + . logic_name=eponine scaffold_150 . biological_region 53694 53698 0.999 - . logic_name=eponine scaffold_150 . biological_region 53786 53786 0.999 - . logic_name=eponine scaffold_150 . biological_region 53791 53792 0.999 - . logic_name=eponine scaffold_150 . exon 48583 48648 . + . ID=Physo143753.3;Parent=Physo143753;constitutive=1;rank=3 scaffold_150 . exon 48687 49058 . + . ID=Physo143753.4;Parent=Physo143753;constitutive=1;rank=4 scaffold_150 . exon 49484 50083 . + . ID=Physo143753.5;Parent=Physo143753;constitutive=1;rank=5 scaffold_150 . exon 50118 50132 . + . ID=Physo143753.6;Parent=Physo143753;constitutive=1;rank=6 scaffold_150 ensembl protein_coding_gene 51005 53919 . - . ID=Physo143754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500015;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 51005 53919 . - . ID=Physo143754;Parent=Physo143754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 51005 52257 . - 0 ID=Physo143754;Parent=Physo143754;rank=2 scaffold_150 . exon 51005 52257 . - . ID=Physo143754.2;Parent=Physo143754;constitutive=1;ensembl_phase=1;rank=2 scaffold_150 . CDS 52392 53919 . - 0 ID=Physo143754;Parent=Physo143754;rank=1 scaffold_150 . exon 52392 53919 . - . ID=Physo143754.1;Parent=Physo143754;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_150 . repeat_region 57867 58043 . + . description=(TCG)n scaffold_150 . repeat_region 58801 58820 . ? . description=trf scaffold_150 . repeat_region 60341 60377 . ? . description=trf scaffold_150 . repeat_region 65831 65876 . ? . description=trf scaffold_150 ensembl pseudogene 63609 64676 . - . ID=Physo109587;biotype=pseudogene;external_name=estExt_fgenesh1_pm.C_1500003;logic_name=jgi_physo1_1 scaffold_150 ensembl pseudogene 63609 64676 . - . ID=Physo109587;Parent=Physo109587;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_150 . exon 63609 63988 . - . ID=Physo109587.3;Parent=Physo109587;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_150 . exon 64011 64296 . - . ID=Physo109587.2;Parent=Physo109587;constitutive=1;ensembl_phase=2;rank=2 scaffold_150 . exon 64338 64676 . - . ID=Physo109587.1;Parent=Physo109587;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_150 ensembl protein_coding_gene 57777 59482 . - . ID=Physo143755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500016;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 57777 59482 . - . ID=Physo143755;Parent=Physo143755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 57777 58327 . - 0 ID=Physo143755;Parent=Physo143755;rank=4 scaffold_150 . exon 57777 58327 . - . ID=Physo143755.4;Parent=Physo143755;constitutive=1;ensembl_phase=1;rank=4 scaffold_150 . CDS 58414 58640 . - 0 ID=Physo143755;Parent=Physo143755;rank=3 scaffold_150 . exon 58414 58640 . - . ID=Physo143755.3;Parent=Physo143755;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_150 . CDS 58675 58795 . - 0 ID=Physo143755;Parent=Physo143755;rank=2 scaffold_150 . exon 58675 58795 . - . ID=Physo143755.2;Parent=Physo143755;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_150 . CDS 59143 59482 . - 0 ID=Physo143755;Parent=Physo143755;rank=1 scaffold_150 . exon 59143 59482 . - . ID=Physo143755.1;Parent=Physo143755;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_150 ensembl protein_coding_gene 60843 62747 . + . ID=Physo143756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500017;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 60843 62747 . + . ID=Physo143756;Parent=Physo143756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 60843 62747 . + 0 ID=Physo143756;Parent=Physo143756;rank=1 scaffold_150 . exon 60843 62747 . + . ID=Physo143756.1;Parent=Physo143756;constitutive=1;rank=1 scaffold_150 ensembl protein_coding_gene 65238 65884 . - . ID=Physo143758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500019;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 65238 65884 . - . ID=Physo143758;Parent=Physo143758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 65238 65324 . - 0 ID=Physo143758;Parent=Physo143758;rank=2 scaffold_150 . exon 65238 65324 . - . ID=Physo143758.2;Parent=Physo143758;constitutive=1;rank=2 scaffold_150 . CDS 65600 65884 . - 0 ID=Physo143758;Parent=Physo143758;rank=1 scaffold_150 . exon 65600 65884 . - . ID=Physo143758.1;Parent=Physo143758;constitutive=1;rank=1 scaffold_150 . repeat_region 70675 70682 . ? . description=dust scaffold_150 . repeat_region 70725 70732 . ? . description=dust scaffold_150 . repeat_region 70909 70916 . ? . description=dust scaffold_150 . repeat_region 71653 71666 . ? . description=dust scaffold_150 . repeat_region 75774 75781 . ? . description=dust scaffold_150 . repeat_region 75920 75928 . ? . description=dust scaffold_150 ensembl protein_coding_gene 67619 68616 . + . ID=Physo143759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500020;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 67619 68616 . + . ID=Physo143759;Parent=Physo143759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 67619 67900 . + 0 ID=Physo143759;Parent=Physo143759;rank=1 scaffold_150 . exon 67619 67900 . + . ID=Physo143759.1;Parent=Physo143759;constitutive=1;rank=1 scaffold_150 . CDS 67932 68279 . + 0 ID=Physo143759;Parent=Physo143759;rank=2 scaffold_150 . exon 67932 68279 . + . ID=Physo143759.2;Parent=Physo143759;constitutive=1;rank=2 scaffold_150 . CDS 68308 68616 . + 0 ID=Physo143759;Parent=Physo143759;rank=3 scaffold_150 . exon 68308 68616 . + . ID=Physo143759.3;Parent=Physo143759;constitutive=1;rank=3 scaffold_150 ensembl protein_coding_gene 68960 70179 . - . ID=Physo143760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500021;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 68960 70179 . - . ID=Physo143760;Parent=Physo143760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 68960 69780 . - 0 ID=Physo143760;Parent=Physo143760;rank=3 scaffold_150 . exon 68960 69780 . - . ID=Physo143760.3;Parent=Physo143760;constitutive=1;ensembl_phase=1;rank=3 scaffold_150 . CDS 69859 69972 . - 0 ID=Physo143760;Parent=Physo143760;rank=2 scaffold_150 . exon 69859 69972 . - . ID=Physo143760.2;Parent=Physo143760;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_150 . CDS 70074 70179 . - 0 ID=Physo143760;Parent=Physo143760;rank=1 scaffold_150 . exon 70074 70179 . - . ID=Physo143760.1;Parent=Physo143760;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_150 . repeat_region 76837 76865 . ? . description=trf scaffold_150 . biological_region 77142 77145 0.999 - . logic_name=eponine scaffold_150 ensembl protein_coding_gene 79942 80205 . - . ID=Physo124195;biotype=protein_coding;external_name=estExt_Genewise1.C_1500015;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 79942 80205 . - . ID=Physo124195;Parent=Physo124195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 79942 80160 . - 0 ID=Physo124195;Parent=Physo124195;rank=1 scaffold_150 . exon 79942 80205 . - . ID=Physo124195.1;Parent=Physo124195;constitutive=1;ensembl_phase=-1;rank=1 scaffold_150 . repeat_region 86948 86955 . ? . description=dust scaffold_150 . repeat_region 89986 99840 . ? . description=dust scaffold_150 ensembl protein_coding_gene 87492 87995 . - . ID=Physo143761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500022;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 87492 87995 . - . ID=Physo143761;Parent=Physo143761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 87492 87867 . - 0 ID=Physo143761;Parent=Physo143761;rank=2 scaffold_150 . exon 87492 87867 . - . ID=Physo143761.2;Parent=Physo143761;constitutive=1;ensembl_phase=2;rank=2 scaffold_150 . CDS 87931 87995 . - 0 ID=Physo143761;Parent=Physo143761;rank=1 scaffold_150 . exon 87931 87995 . - . ID=Physo143761.1;Parent=Physo143761;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_150 . repeat_region 99841 108317 . ? . description=dust scaffold_150 . repeat_region 109626 110658 . ? . description=dust scaffold_150 . repeat_region 112178 114238 . ? . description=dust scaffold_150 . repeat_region 119835 119858 . ? . description=trf scaffold_150 . biological_region 120270 120274 0.999 + . logic_name=eponine scaffold_150 . repeat_region 121909 121974 . ? . description=trf scaffold_150 . biological_region 124551 124558 0.999 + . logic_name=eponine scaffold_150 . biological_region 124626 124627 0.999 + . logic_name=eponine scaffold_150 . biological_region 124670 124674 0.999 - . logic_name=eponine scaffold_150 . biological_region 124695 124697 0.999 + . logic_name=eponine scaffold_150 ensembl protein_coding_gene 120166 120778 . + . ID=Physo143762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500023;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 120166 120778 . + . ID=Physo143762;Parent=Physo143762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . CDS 120166 120222 . + 0 ID=Physo143762;Parent=Physo143762;rank=1 scaffold_150 . exon 120166 120222 . + . ID=Physo143762.1;Parent=Physo143762;constitutive=1;rank=1 scaffold_150 . CDS 120288 120372 . + 0 ID=Physo143762;Parent=Physo143762;rank=2 scaffold_150 . exon 120288 120372 . + . ID=Physo143762.2;Parent=Physo143762;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_150 . CDS 120414 120778 . + 0 ID=Physo143762;Parent=Physo143762;rank=3 scaffold_150 . exon 120414 120778 . + . ID=Physo143762.3;Parent=Physo143762;constitutive=1;ensembl_phase=1;rank=3 scaffold_150 ensembl protein_coding_gene 121688 124332 . + . ID=Physo143763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500024;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 121688 124332 . + . ID=Physo143763;Parent=Physo143763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . exon 121688 122027 . + . ID=Physo143763.1;Parent=Physo143763;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_150 . exon 123680 124247 . + . ID=Physo143763.2;Parent=Physo143763;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_150 . CDS 123684 124154 . + 0 ID=Physo143763;Parent=Physo143763;rank=1 scaffold_150 . exon 124267 124332 . + . ID=Physo143763.3;Parent=Physo143763;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_150 ensembl protein_coding_gene 124363 124796 . - . ID=Physo143764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1500025;logic_name=jgi_physo1_1 scaffold_150 ensembl transcript 124363 124796 . - . ID=Physo143764;Parent=Physo143764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_150 . exon 124363 124476 . - . ID=Physo143764.2;Parent=Physo143764;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_150 . CDS 124464 124476 . - 0 ID=Physo143764;Parent=Physo143764;rank=2 scaffold_150 . CDS 124507 124796 . - 0 ID=Physo143764;Parent=Physo143764;rank=1 scaffold_150 . exon 124507 124796 . - . ID=Physo143764.1;Parent=Physo143764;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_149 1 125527 scaffold_149 . biological_region 3231 3237 0.999 + . logic_name=eponine scaffold_149 . biological_region 3326 3329 0.999 + . logic_name=eponine scaffold_149 . biological_region 4202 4208 0.999 - . logic_name=eponine scaffold_149 . biological_region 9242 9246 0.999 + . logic_name=eponine scaffold_149 ensembl protein_coding_gene 842 2393 . - . ID=Physo143707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490001;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 842 2393 . - . ID=Physo143707;Parent=Physo143707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 842 1336 . - 0 ID=Physo143707;Parent=Physo143707;rank=3 scaffold_149 . exon 842 1336 . - . ID=Physo143707.3;Parent=Physo143707;constitutive=1;rank=3 scaffold_149 . CDS 1358 2269 . - 0 ID=Physo143707;Parent=Physo143707;rank=2 scaffold_149 . exon 1358 2269 . - . ID=Physo143707.2;Parent=Physo143707;constitutive=1;rank=2 scaffold_149 . CDS 2358 2393 . - 0 ID=Physo143707;Parent=Physo143707;rank=1 scaffold_149 . exon 2358 2393 . - . ID=Physo143707.1;Parent=Physo143707;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 3172 4951 . - . ID=Physo143708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490002;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 3172 4951 . - . ID=Physo143708;Parent=Physo143708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 3172 3504 . - 0 ID=Physo143708;Parent=Physo143708;rank=6 scaffold_149 . exon 3172 3504 . - . ID=Physo143708.6;Parent=Physo143708;constitutive=1;rank=6 scaffold_149 . CDS 3526 3578 . - 0 ID=Physo143708;Parent=Physo143708;rank=5 scaffold_149 . exon 3526 3578 . - . ID=Physo143708.5;Parent=Physo143708;constitutive=1;ensembl_phase=1;rank=5 scaffold_149 . CDS 3648 3836 . - 0 ID=Physo143708;Parent=Physo143708;rank=4 scaffold_149 . exon 3648 3836 . - . ID=Physo143708.4;Parent=Physo143708;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_149 . CDS 3896 3942 . - 0 ID=Physo143708;Parent=Physo143708;rank=3 scaffold_149 . exon 3896 3942 . - . ID=Physo143708.3;Parent=Physo143708;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_149 . CDS 4142 4525 . - 0 ID=Physo143708;Parent=Physo143708;rank=2 scaffold_149 . exon 4142 4525 . - . ID=Physo143708.2;Parent=Physo143708;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_149 . CDS 4830 4951 . - 0 ID=Physo143708;Parent=Physo143708;rank=1 scaffold_149 . exon 4830 4951 . - . ID=Physo143708.1;Parent=Physo143708;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_149 ensembl protein_coding_gene 5861 8368 . + . ID=Physo143709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490003;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 5861 8368 . + . ID=Physo143709;Parent=Physo143709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 5861 8368 . + 0 ID=Physo143709;Parent=Physo143709;rank=1 scaffold_149 . exon 5861 8368 . + . ID=Physo143709.1;Parent=Physo143709;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 8644 12233 . + . ID=Physo143710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490004;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 8644 12233 . + . ID=Physo143710;Parent=Physo143710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 8644 10572 . + 0 ID=Physo143710;Parent=Physo143710;rank=1 scaffold_149 . exon 8644 10572 . + . ID=Physo143710.1;Parent=Physo143710;constitutive=1;rank=1 scaffold_149 . CDS 10701 12233 . + 0 ID=Physo143710;Parent=Physo143710;rank=2 scaffold_149 ensembl protein_coding_gene 15143 16615 . - . ID=Physo124137;biotype=protein_coding;external_name=estExt_Genewise1.C_1490002;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 15143 16615 . - . ID=Physo124137;Parent=Physo124137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 15143 16117 . - 0 ID=Physo124137;Parent=Physo124137;rank=3 scaffold_149 . exon 15143 16117 . - . ID=Physo124137.3;Parent=Physo124137;constitutive=1;rank=3 scaffold_149 . CDS 16195 16396 . - 0 ID=Physo124137;Parent=Physo124137;rank=2 scaffold_149 . exon 16195 16396 . - . ID=Physo124137.2;Parent=Physo124137;constitutive=1;ensembl_phase=2;rank=2 scaffold_149 . CDS 16476 16588 . - 0 ID=Physo124137;Parent=Physo124137;rank=1 scaffold_149 . exon 16476 16615 . - . ID=Physo124137.1;Parent=Physo124137;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_149 . exon 10701 12233 . + . ID=Physo143710.2;Parent=Physo143710;constitutive=1;rank=2 scaffold_149 ensembl protein_coding_gene 17008 19818 . - . ID=Physo143712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490006;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 17008 19818 . - . ID=Physo143712;Parent=Physo143712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 17008 19818 . - 0 ID=Physo143712;Parent=Physo143712;rank=1 scaffold_149 . exon 17008 19818 . - . ID=Physo143712.1;Parent=Physo143712;constitutive=1;rank=1 scaffold_149 . biological_region 19543 19546 0.999 + . logic_name=eponine scaffold_149 . repeat_region 23990 24024 . ? . description=dust scaffold_149 . repeat_region 23993 24022 . ? . description=trf scaffold_149 . repeat_region 24026 24198 . ? . description=trf scaffold_149 . repeat_region 24028 24048 . ? . description=trf scaffold_149 . repeat_region 24093 24123 . ? . description=trf scaffold_149 . repeat_region 24259 24267 . ? . description=dust scaffold_149 . repeat_region 26439 26462 . ? . description=trf scaffold_149 . repeat_region 26580 26642 . ? . description=dust scaffold_149 . repeat_region 26583 26631 . ? . description=trf scaffold_149 . repeat_region 27881 27901 . ? . description=trf scaffold_149 ensembl protein_coding_gene 20457 22964 . - . ID=Physo143713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490007;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 20457 22964 . - . ID=Physo143713;Parent=Physo143713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 20457 22964 . - 0 ID=Physo143713;Parent=Physo143713;rank=1 scaffold_149 . exon 20457 22964 . - . ID=Physo143713.1;Parent=Physo143713;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 24124 24990 . + . ID=Physo143714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490008;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 24124 24990 . + . ID=Physo143714;Parent=Physo143714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 24124 24481 . + 0 ID=Physo143714;Parent=Physo143714;rank=1 scaffold_149 . exon 24124 24481 . + . ID=Physo143714.1;Parent=Physo143714;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_149 . CDS 24555 24841 . + 0 ID=Physo143714;Parent=Physo143714;rank=2 scaffold_149 . exon 24555 24841 . + . ID=Physo143714.2;Parent=Physo143714;constitutive=1;ensembl_phase=1;rank=2 scaffold_149 . CDS 24988 24990 . + 0 ID=Physo143714;Parent=Physo143714;rank=3 scaffold_149 . exon 24988 24990 . + . ID=Physo143714.3;Parent=Physo143714;constitutive=1;rank=3 scaffold_149 ensembl protein_coding_gene 26415 28532 . - . ID=Physo143715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490009;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 26415 28532 . - . ID=Physo143715;Parent=Physo143715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 26415 28404 . - 0 ID=Physo143715;Parent=Physo143715;rank=2 scaffold_149 . exon 26415 28404 . - . ID=Physo143715.2;Parent=Physo143715;constitutive=1;ensembl_phase=2;rank=2 scaffold_149 . CDS 28489 28532 . - 0 ID=Physo143715;Parent=Physo143715;rank=1 scaffold_149 . exon 28489 28532 . - . ID=Physo143715.1;Parent=Physo143715;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_149 . repeat_region 31244 33075 . - . description=Polinton-1_PI scaffold_149 ensembl snoRNA_gene 29288 29358 . - . ID=EPrPSOG00000000087;biotype=snoRNA;description=Small nucleolar RNA SNORD36 [Source:RFAM%3BAcc:RF00049];external_name=SNORD36;logic_name=ncrna_eg scaffold_149 ensembl snoRNA 29288 29358 . - . ID=EPrPSOT00000000087;Parent=EPrPSOG00000000087;biotype=snoRNA;logic_name=ncrna_eg scaffold_149 ensembl snoRNA_gene 29545 29635 . - . ID=EPrPSOG00000000092;biotype=snoRNA;description=Small nucleolar RNA snR60/Z15/Z230/Z193/J17 [Source:RFAM%3BAcc:RF00309];external_name=snosnR60_Z15;logic_name=ncrna_eg scaffold_149 ensembl snoRNA 29545 29635 . - . ID=EPrPSOT00000000092;Parent=EPrPSOG00000000092;biotype=snoRNA;logic_name=ncrna_eg scaffold_149 . exon 29288 29358 . - . ID=EPrPSOE00000000087;Parent=EPrPSOT00000000087;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_149 . exon 29545 29635 . - . ID=EPrPSOE00000000092;Parent=EPrPSOT00000000092;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_149 ensembl protein_coding_gene 32127 33307 . - . ID=Physo143716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490010;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 32127 33307 . - . ID=Physo143716;Parent=Physo143716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 32127 32186 . - 0 ID=Physo143716;Parent=Physo143716;rank=3 scaffold_149 . exon 32127 32186 . - . ID=Physo143716.3;Parent=Physo143716;constitutive=1;rank=3 scaffold_149 . CDS 32221 33015 . - 0 ID=Physo143716;Parent=Physo143716;rank=2 scaffold_149 . exon 32221 33015 . - . ID=Physo143716.2;Parent=Physo143716;constitutive=1;rank=2 scaffold_149 . CDS 33293 33307 . - 0 ID=Physo143716;Parent=Physo143716;rank=1 scaffold_149 . exon 33293 33307 . - . ID=Physo143716.1;Parent=Physo143716;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 35058 36044 . + . ID=Physo143717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490011;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 35058 36044 . + . ID=Physo143717;Parent=Physo143717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 35058 36044 . + 0 ID=Physo143717;Parent=Physo143717;rank=1 scaffold_149 . exon 35058 36044 . + . ID=Physo143717.1;Parent=Physo143717;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 38584 39610 . + . ID=Physo143718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490012;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 38584 39610 . + . ID=Physo143718;Parent=Physo143718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 38584 38774 . + 0 ID=Physo143718;Parent=Physo143718;rank=1 scaffold_149 . exon 38584 38774 . + . ID=Physo143718.1;Parent=Physo143718;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_149 . CDS 38815 38877 . + 0 ID=Physo143718;Parent=Physo143718;rank=2 scaffold_149 . CDS 38949 38989 . + 0 ID=Physo143718;Parent=Physo143718;rank=3 scaffold_149 . CDS 39080 39148 . + 0 ID=Physo143718;Parent=Physo143718;rank=4 scaffold_149 . CDS 39231 39264 . + 0 ID=Physo143718;Parent=Physo143718;rank=5 scaffold_149 . CDS 39595 39610 . + 0 ID=Physo143718;Parent=Physo143718;rank=6 scaffold_149 . repeat_region 40791 40798 . ? . description=dust scaffold_149 . repeat_region 42146 42154 . ? . description=dust scaffold_149 . repeat_region 42825 42858 . ? . description=trf scaffold_149 . biological_region 44871 44871 0.999 + . logic_name=eponine scaffold_149 . biological_region 45303 45306 0.999 - . logic_name=eponine scaffold_149 . biological_region 46738 46743 0.999 + . logic_name=eponine scaffold_149 . biological_region 47248 47254 0.999 - . logic_name=eponine scaffold_149 . biological_region 47285 47291 0.999 + . logic_name=eponine scaffold_149 . repeat_region 47659 47669 . ? . description=dust scaffold_149 ensembl protein_coding_gene 44550 45584 . + . ID=Physo124146;biotype=protein_coding;external_name=estExt_Genewise1.C_1490011;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 44550 45584 . + . ID=Physo124146;Parent=Physo124146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . exon 44550 45584 . + . ID=Physo124146.1;Parent=Physo124146;constitutive=1;ensembl_phase=-1;rank=1 scaffold_149 . CDS 44571 45584 . + 0 ID=Physo124146;Parent=Physo124146;rank=1 scaffold_149 ensembl protein_coding_gene 45864 47119 . - . ID=Physo124148;biotype=protein_coding;external_name=estExt_Genewise1.C_1490013;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 45864 47119 . - . ID=Physo124148;Parent=Physo124148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 45864 46955 . - 0 ID=Physo124148;Parent=Physo124148;rank=1 scaffold_149 . exon 45864 47119 . - . ID=Physo124148.1;Parent=Physo124148;constitutive=1;ensembl_phase=-1;rank=1 scaffold_149 . exon 38815 38877 . + . ID=Physo143718.2;Parent=Physo143718;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_149 . exon 38949 38989 . + . ID=Physo143718.3;Parent=Physo143718;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_149 . exon 39080 39148 . + . ID=Physo143718.4;Parent=Physo143718;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_149 . exon 39231 39264 . + . ID=Physo143718.5;Parent=Physo143718;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_149 . exon 39595 39610 . + . ID=Physo143718.6;Parent=Physo143718;constitutive=1;ensembl_phase=2;rank=6 scaffold_149 ensembl protein_coding_gene 39990 40719 . + . ID=Physo143719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490013;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 39990 40719 . + . ID=Physo143719;Parent=Physo143719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 39990 40238 . + 0 ID=Physo143719;Parent=Physo143719;rank=1 scaffold_149 . exon 39990 40238 . + . ID=Physo143719.1;Parent=Physo143719;constitutive=1;rank=1 scaffold_149 . CDS 40315 40719 . + 0 ID=Physo143719;Parent=Physo143719;rank=2 scaffold_149 . exon 40315 40719 . + . ID=Physo143719.2;Parent=Physo143719;constitutive=1;rank=2 scaffold_149 ensembl protein_coding_gene 43143 43697 . - . ID=Physo143721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490015;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 43143 43697 . - . ID=Physo143721;Parent=Physo143721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 43143 43616 . - 0 ID=Physo143721;Parent=Physo143721;rank=1 scaffold_149 . exon 43143 43697 . - . ID=Physo143721.1;Parent=Physo143721;constitutive=1;ensembl_phase=-1;rank=1 scaffold_149 ensembl protein_coding_gene 47729 49249 . + . ID=Physo143724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490018;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 47729 49249 . + . ID=Physo143724;Parent=Physo143724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . exon 47729 49249 . + . ID=Physo143724.1;Parent=Physo143724;constitutive=1;ensembl_phase=-1;rank=1 scaffold_149 . CDS 47765 49249 . + 0 ID=Physo143724;Parent=Physo143724;rank=1 scaffold_149 ensembl protein_coding_gene 40892 42973 . + . ID=Physo158813;biotype=protein_coding;external_name=C_scaffold_149000003;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 40892 42973 . + . ID=Physo158813;Parent=Physo158813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 40892 41050 . + 0 ID=Physo158813;Parent=Physo158813;rank=1 scaffold_149 . exon 40892 41050 . + . ID=Physo158813.1;Parent=Physo158813;constitutive=1;rank=1 scaffold_149 . CDS 41252 41292 . + 0 ID=Physo158813;Parent=Physo158813;rank=2 scaffold_149 . exon 41252 41292 . + . ID=Physo158813.2;Parent=Physo158813;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_149 . CDS 41356 41437 . + 0 ID=Physo158813;Parent=Physo158813;rank=3 scaffold_149 . exon 41356 41437 . + . ID=Physo158813.3;Parent=Physo158813;constitutive=1;ensembl_phase=2;rank=3 scaffold_149 . CDS 41527 41627 . + 0 ID=Physo158813;Parent=Physo158813;rank=4 scaffold_149 . exon 41527 41627 . + . ID=Physo158813.4;Parent=Physo158813;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_149 . CDS 41693 41828 . + 0 ID=Physo158813;Parent=Physo158813;rank=5 scaffold_149 . exon 41693 41828 . + . ID=Physo158813.5;Parent=Physo158813;constitutive=1;ensembl_phase=2;rank=5 scaffold_149 . CDS 41885 42127 . + 0 ID=Physo158813;Parent=Physo158813;rank=6 scaffold_149 . exon 41885 42127 . + . ID=Physo158813.6;Parent=Physo158813;constitutive=1;rank=6 scaffold_149 . CDS 42199 42486 . + 0 ID=Physo158813;Parent=Physo158813;rank=7 scaffold_149 . exon 42199 42486 . + . ID=Physo158813.7;Parent=Physo158813;constitutive=1;rank=7 scaffold_149 . CDS 42548 42635 . + 0 ID=Physo158813;Parent=Physo158813;rank=8 scaffold_149 . exon 42548 42635 . + . ID=Physo158813.8;Parent=Physo158813;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_149 . CDS 42666 42973 . + 0 ID=Physo158813;Parent=Physo158813;rank=9 scaffold_149 . exon 42666 42973 . + . ID=Physo158813.9;Parent=Physo158813;constitutive=1;ensembl_phase=1;rank=9 scaffold_149 ensembl protein_coding_gene 50892 51907 . - . ID=Physo109583;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1490003;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 50892 51907 . - . ID=Physo109583;Parent=Physo109583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 50892 51890 . - 0 ID=Physo109583;Parent=Physo109583;rank=1 scaffold_149 . exon 50892 51907 . - . ID=Physo109583.1;Parent=Physo109583;constitutive=1;ensembl_phase=-1;rank=1 scaffold_149 ensembl protein_coding_gene 50050 50726 . + . ID=Physo124155;biotype=protein_coding;external_name=estExt_Genewise1.C_1490020;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 50050 50726 . + . ID=Physo124155;Parent=Physo124155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . exon 50050 50062 . + . ID=Physo124155.1;Parent=Physo124155;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_149 . CDS 50052 50062 . + 0 ID=Physo124155;Parent=Physo124155;rank=1 scaffold_149 . CDS 50091 50093 . + 0 ID=Physo124155;Parent=Physo124155;rank=2 scaffold_149 . exon 50091 50093 . + . ID=Physo124155.2;Parent=Physo124155;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_149 . CDS 50139 50198 . + 0 ID=Physo124155;Parent=Physo124155;rank=3 scaffold_149 . exon 50139 50198 . + . ID=Physo124155.3;Parent=Physo124155;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_149 . CDS 50276 50333 . + 0 ID=Physo124155;Parent=Physo124155;rank=4 scaffold_149 . exon 50276 50333 . + . ID=Physo124155.4;Parent=Physo124155;constitutive=1;ensembl_phase=2;rank=4 scaffold_149 . CDS 50426 50465 . + 0 ID=Physo124155;Parent=Physo124155;rank=5 scaffold_149 . exon 50426 50465 . + . ID=Physo124155.5;Parent=Physo124155;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_149 . CDS 50552 50652 . + 0 ID=Physo124155;Parent=Physo124155;rank=6 scaffold_149 . exon 50552 50726 . + . ID=Physo124155.6;Parent=Physo124155;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_149 ensembl protein_coding_gene 54395 57526 . + . ID=Physo143726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490020;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 54395 57526 . + . ID=Physo143726;Parent=Physo143726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 54395 55763 . + 0 ID=Physo143726;Parent=Physo143726;rank=1 scaffold_149 . exon 54395 55763 . + . ID=Physo143726.1;Parent=Physo143726;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_149 . CDS 56201 56730 . + 0 ID=Physo143726;Parent=Physo143726;rank=2 scaffold_149 . exon 56201 56730 . + . ID=Physo143726.2;Parent=Physo143726;constitutive=1;ensembl_phase=1;rank=2 scaffold_149 . CDS 56797 57360 . + 0 ID=Physo143726;Parent=Physo143726;rank=3 scaffold_149 . exon 56797 57360 . + . ID=Physo143726.3;Parent=Physo143726;constitutive=1;rank=3 scaffold_149 . CDS 57386 57526 . + 0 ID=Physo143726;Parent=Physo143726;rank=4 scaffold_149 . exon 57386 57526 . + . ID=Physo143726.4;Parent=Physo143726;constitutive=1;rank=4 scaffold_149 ensembl protein_coding_gene 57666 61293 . + . ID=Physo143727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490021;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 57666 61293 . + . ID=Physo143727;Parent=Physo143727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 57666 57954 . + 0 ID=Physo143727;Parent=Physo143727;rank=1 scaffold_149 . exon 57666 57954 . + . ID=Physo143727.1;Parent=Physo143727;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_149 . CDS 58011 58197 . + 0 ID=Physo143727;Parent=Physo143727;rank=2 scaffold_149 . CDS 58459 58566 . + 0 ID=Physo143727;Parent=Physo143727;rank=3 scaffold_149 . CDS 58663 59110 . + 0 ID=Physo143727;Parent=Physo143727;rank=4 scaffold_149 . CDS 59381 59827 . + 0 ID=Physo143727;Parent=Physo143727;rank=5 scaffold_149 . CDS 60014 60169 . + 0 ID=Physo143727;Parent=Physo143727;rank=6 scaffold_149 . CDS 60211 60775 . + 0 ID=Physo143727;Parent=Physo143727;rank=7 scaffold_149 . CDS 60893 61293 . + 0 ID=Physo143727;Parent=Physo143727;rank=8 scaffold_149 . biological_region 61571 61572 0.999 + . logic_name=eponine scaffold_149 . biological_region 62597 62602 0.999 + . logic_name=eponine scaffold_149 . biological_region 63597 63606 0.999 - . logic_name=eponine scaffold_149 . biological_region 63765 63768 0.999 + . logic_name=eponine scaffold_149 . biological_region 63944 63945 0.999 + . logic_name=eponine scaffold_149 . repeat_region 64001 64044 . ? . description=trf scaffold_149 . repeat_region 64069 64131 . ? . description=dust scaffold_149 . repeat_region 64088 64174 . ? . description=trf scaffold_149 . repeat_region 64112 64204 . ? . description=trf scaffold_149 . biological_region 64116 64118 0.999 - . logic_name=eponine scaffold_149 . repeat_region 64142 64191 . ? . description=trf scaffold_149 . repeat_region 64253 64351 . ? . description=trf scaffold_149 . exon 58011 58197 . + . ID=Physo143727.2;Parent=Physo143727;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_149 . exon 58459 58566 . + . ID=Physo143727.3;Parent=Physo143727;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_149 . exon 58663 59110 . + . ID=Physo143727.4;Parent=Physo143727;constitutive=1;ensembl_phase=2;rank=4 scaffold_149 . exon 59381 59827 . + . ID=Physo143727.5;Parent=Physo143727;constitutive=1;rank=5 scaffold_149 . exon 60014 60169 . + . ID=Physo143727.6;Parent=Physo143727;constitutive=1;rank=6 scaffold_149 . exon 60211 60775 . + . ID=Physo143727.7;Parent=Physo143727;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_149 . exon 60893 61293 . + . ID=Physo143727.8;Parent=Physo143727;constitutive=1;ensembl_phase=1;rank=8 scaffold_149 ensembl protein_coding_gene 61429 63038 . + . ID=Physo143728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490022;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 61429 63038 . + . ID=Physo143728;Parent=Physo143728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . exon 61429 62192 . + . ID=Physo143728.1;Parent=Physo143728;constitutive=1;ensembl_phase=-1;rank=1 scaffold_149 . CDS 61470 62192 . + 0 ID=Physo143728;Parent=Physo143728;rank=1 scaffold_149 . CDS 62260 62973 . + 0 ID=Physo143728;Parent=Physo143728;rank=2 scaffold_149 . exon 62260 63038 . + . ID=Physo143728.2;Parent=Physo143728;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_149 ensembl protein_coding_gene 63721 64528 . + . ID=Physo143729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490023;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 63721 64528 . + . ID=Physo143729;Parent=Physo143729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . exon 63721 64528 . + . ID=Physo143729.1;Parent=Physo143729;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_149 . CDS 63770 64372 . + 0 ID=Physo143729;Parent=Physo143729;rank=1 scaffold_149 ensembl protein_coding_gene 65006 65599 . + . ID=Physo143730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490024;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 65006 65599 . + . ID=Physo143730;Parent=Physo143730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 65006 65147 . + 0 ID=Physo143730;Parent=Physo143730;rank=1 scaffold_149 . exon 65006 65147 . + . ID=Physo143730.1;Parent=Physo143730;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_149 . CDS 65168 65514 . + 0 ID=Physo143730;Parent=Physo143730;rank=2 scaffold_149 . exon 65168 65514 . + . ID=Physo143730.2;Parent=Physo143730;constitutive=1;ensembl_phase=1;rank=2 scaffold_149 . CDS 65597 65599 . + 0 ID=Physo143730;Parent=Physo143730;rank=3 scaffold_149 . exon 65597 65599 . + . ID=Physo143730.3;Parent=Physo143730;constitutive=1;rank=3 scaffold_149 . repeat_region 69749 69932 . + . description=Polinton-1_PI scaffold_149 ensembl protein_coding_gene 71294 72792 . + . ID=Physo109584;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1490004;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 71294 72792 . + . ID=Physo109584;Parent=Physo109584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . exon 71294 72792 . + . ID=Physo109584.1;Parent=Physo109584;constitutive=1;ensembl_phase=-1;rank=1 scaffold_149 . CDS 71302 72792 . + 0 ID=Physo109584;Parent=Physo109584;rank=1 scaffold_149 ensembl protein_coding_gene 69777 71075 . + . ID=Physo124172;biotype=protein_coding;external_name=estExt_Genewise1.C_1490037;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 69777 71075 . + . ID=Physo124172;Parent=Physo124172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 69777 71075 . + 0 ID=Physo124172;Parent=Physo124172;rank=1 scaffold_149 . exon 69777 71075 . + . ID=Physo124172.1;Parent=Physo124172;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 68397 68924 . + . ID=Physo143731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490025;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 68397 68924 . + . ID=Physo143731;Parent=Physo143731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 68397 68924 . + 0 ID=Physo143731;Parent=Physo143731;rank=1 scaffold_149 . exon 68397 68924 . + . ID=Physo143731.1;Parent=Physo143731;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 76470 77441 . - . ID=Physo143734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490028;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 76470 77441 . - . ID=Physo143734;Parent=Physo143734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 76470 77441 . - 0 ID=Physo143734;Parent=Physo143734;rank=1 scaffold_149 . exon 76470 77441 . - . ID=Physo143734.1;Parent=Physo143734;constitutive=1;rank=1 scaffold_149 . biological_region 85432 85432 0.999 - . logic_name=eponine scaffold_149 . repeat_region 85562 85595 . ? . description=trf scaffold_149 . repeat_region 88624 91564 . - . description=Gypsy-2-I_PI-int scaffold_149 . repeat_region 95408 95711 . - . description=GypsyPi-1c_LTR scaffold_149 . repeat_region 95716 95724 . ? . description=dust scaffold_149 ensembl protein_coding_gene 95877 98065 . + . ID=Physo143735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490029;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 95877 98065 . + . ID=Physo143735;Parent=Physo143735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 95877 96594 . + 0 ID=Physo143735;Parent=Physo143735;rank=1 scaffold_149 . exon 95877 96594 . + . ID=Physo143735.1;Parent=Physo143735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_149 . CDS 96687 98065 . + 0 ID=Physo143735;Parent=Physo143735;rank=2 scaffold_149 . repeat_region 96583 99062 . - . description=GypsyPi-1c_I-int scaffold_149 . biological_region 97906 97909 0.999 - . logic_name=eponine scaffold_149 . biological_region 97956 97959 0.999 - . logic_name=eponine scaffold_149 . biological_region 98639 98643 0.999 + . logic_name=eponine scaffold_149 . repeat_region 99575 100424 . - . description=GypsyPi-1c_I-int scaffold_149 . repeat_region 100425 103883 . - . description=GypsyPi-1c_I-int scaffold_149 . biological_region 100849 100850 0.999 + . logic_name=eponine scaffold_149 . biological_region 100919 100923 0.999 - . logic_name=eponine scaffold_149 . biological_region 100974 100978 0.999 + . logic_name=eponine scaffold_149 . biological_region 101720 101724 0.999 - . logic_name=eponine scaffold_149 . repeat_region 101761 101891 . ? . description=trf scaffold_149 . repeat_region 101823 101893 . ? . description=trf scaffold_149 . repeat_region 101874 102041 . ? . description=trf scaffold_149 . repeat_region 102473 102492 . ? . description=trf scaffold_149 . biological_region 103361 103363 0.999 + . logic_name=eponine scaffold_149 . biological_region 103639 103640 0.999 - . logic_name=eponine scaffold_149 . exon 96687 98065 . + . ID=Physo143735.2;Parent=Physo143735;constitutive=1;ensembl_phase=1;rank=2 scaffold_149 ensembl protein_coding_gene 99785 102454 . - . ID=Physo143736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490030;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 99785 102454 . - . ID=Physo143736;Parent=Physo143736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 99785 102454 . - 0 ID=Physo143736;Parent=Physo143736;rank=1 scaffold_149 . exon 99785 102454 . - . ID=Physo143736.1;Parent=Physo143736;constitutive=1;rank=1 scaffold_149 ensembl protein_coding_gene 102792 103796 . - . ID=Physo143737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490031;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 102792 103796 . - . ID=Physo143737;Parent=Physo143737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 102792 103796 . - 0 ID=Physo143737;Parent=Physo143737;rank=1 scaffold_149 . exon 102792 103796 . - . ID=Physo143737.1;Parent=Physo143737;constitutive=1;rank=1 scaffold_149 . repeat_region 106870 106877 . ? . description=dust scaffold_149 . repeat_region 111305 111527 . - . description=Polinton-1_PI scaffold_149 . repeat_region 111700 111708 . ? . description=dust scaffold_149 . biological_region 117876 117878 0.999 - . logic_name=eponine scaffold_149 . biological_region 121021 121024 0.999 + . logic_name=eponine scaffold_149 . biological_region 121034 121038 0.999 + . logic_name=eponine scaffold_149 ensembl protein_coding_gene 116884 119286 . - . ID=Physo143738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490032;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 116884 119286 . - . ID=Physo143738;Parent=Physo143738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 116884 117841 . - 0 ID=Physo143738;Parent=Physo143738;rank=2 scaffold_149 . exon 116884 117841 . - . ID=Physo143738.2;Parent=Physo143738;constitutive=1;ensembl_phase=2;rank=2 scaffold_149 . CDS 118067 119286 . - 0 ID=Physo143738;Parent=Physo143738;rank=1 scaffold_149 . exon 118067 119286 . - . ID=Physo143738.1;Parent=Physo143738;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_149 ensembl protein_coding_gene 119712 121639 . + . ID=Physo143739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1490033;logic_name=jgi_physo1_1 scaffold_149 ensembl transcript 119712 121639 . + . ID=Physo143739;Parent=Physo143739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_149 . CDS 119712 121360 . + 0 ID=Physo143739;Parent=Physo143739;rank=1 scaffold_149 . exon 119712 121360 . + . ID=Physo143739.1;Parent=Physo143739;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_149 . CDS 121594 121639 . + 0 ID=Physo143739;Parent=Physo143739;rank=2 scaffold_149 . exon 121594 121639 . + . ID=Physo143739.2;Parent=Physo143739;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_147 1 127112 scaffold_147 . repeat_region 765 802 . ? . description=trf scaffold_147 . repeat_region 1065 1072 . ? . description=dust scaffold_147 . repeat_region 1122 2142 . ? . description=dust scaffold_147 . biological_region 3113 3113 0.999 + . logic_name=eponine scaffold_147 . repeat_region 3881 4896 . ? . description=dust scaffold_147 . repeat_region 6189 24193 . ? . description=dust scaffold_147 . repeat_region 6189 24193 . ? . description=dust scaffold_147 . repeat_region 25669 25688 . ? . description=trf scaffold_147 . repeat_region 27045 27139 . ? . description=dust scaffold_147 . biological_region 27442 27442 0.999 + . logic_name=eponine scaffold_147 . repeat_region 28510 28559 . ? . description=dust scaffold_147 ensembl protein_coding_gene 24842 25199 . + . ID=Physo143653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470001;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 24842 25199 . + . ID=Physo143653;Parent=Physo143653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 24842 25102 . + 0 ID=Physo143653;Parent=Physo143653;rank=1 scaffold_147 . exon 24842 25102 . + . ID=Physo143653.1;Parent=Physo143653;constitutive=1;rank=1 scaffold_147 . CDS 25152 25199 . + 0 ID=Physo143653;Parent=Physo143653;rank=2 scaffold_147 . exon 25152 25199 . + . ID=Physo143653.2;Parent=Physo143653;constitutive=1;rank=2 scaffold_147 ensembl protein_coding_gene 26117 29722 . - . ID=Physo143654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470002;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 26117 29722 . - . ID=Physo143654;Parent=Physo143654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 26117 27010 . - 0 ID=Physo143654;Parent=Physo143654;rank=4 scaffold_147 . exon 26117 27010 . - . ID=Physo143654.4;Parent=Physo143654;constitutive=1;rank=4 scaffold_147 . CDS 27190 27669 . - 0 ID=Physo143654;Parent=Physo143654;rank=3 scaffold_147 . exon 27190 27669 . - . ID=Physo143654.3;Parent=Physo143654;constitutive=1;rank=3 scaffold_147 . CDS 27701 28502 . - 0 ID=Physo143654;Parent=Physo143654;rank=2 scaffold_147 . exon 27701 28502 . - . ID=Physo143654.2;Parent=Physo143654;constitutive=1;ensembl_phase=2;rank=2 scaffold_147 . CDS 28644 29722 . - 0 ID=Physo143654;Parent=Physo143654;rank=1 scaffold_147 . exon 28644 29722 . - . ID=Physo143654.1;Parent=Physo143654;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_147 . repeat_region 34425 34662 . - . description=GypsyPi-1c_I-int scaffold_147 . repeat_region 36079 36502 . - . description=GypsyPi-1c_I-int scaffold_147 . repeat_region 36481 37534 . - . description=GypsyPi-1c_I-int scaffold_147 ensembl protein_coding_gene 32933 34599 . + . ID=Physo143655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470003;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 32933 34599 . + . ID=Physo143655;Parent=Physo143655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 32933 33038 . + 0 ID=Physo143655;Parent=Physo143655;rank=1 scaffold_147 . exon 32933 33038 . + . ID=Physo143655.1;Parent=Physo143655;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_147 . CDS 33111 33454 . + 0 ID=Physo143655;Parent=Physo143655;rank=2 scaffold_147 . exon 33111 33454 . + . ID=Physo143655.2;Parent=Physo143655;constitutive=1;ensembl_phase=1;rank=2 scaffold_147 . CDS 33571 33804 . + 0 ID=Physo143655;Parent=Physo143655;rank=3 scaffold_147 . exon 33571 33804 . + . ID=Physo143655.3;Parent=Physo143655;constitutive=1;rank=3 scaffold_147 . CDS 33897 33928 . + 0 ID=Physo143655;Parent=Physo143655;rank=4 scaffold_147 . exon 33897 33928 . + . ID=Physo143655.4;Parent=Physo143655;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_147 . CDS 34095 34426 . + 0 ID=Physo143655;Parent=Physo143655;rank=5 scaffold_147 . exon 34095 34426 . + . ID=Physo143655.5;Parent=Physo143655;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_147 . CDS 34589 34599 . + 0 ID=Physo143655;Parent=Physo143655;rank=6 scaffold_147 . exon 34589 34599 . + . ID=Physo143655.6;Parent=Physo143655;constitutive=1;ensembl_phase=1;rank=6 scaffold_147 ensembl protein_coding_gene 35930 37905 . - . ID=Physo143656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470004;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 35930 37905 . - . ID=Physo143656;Parent=Physo143656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 35930 36959 . - 0 ID=Physo143656;Parent=Physo143656;rank=2 scaffold_147 . exon 35930 36959 . - . ID=Physo143656.2;Parent=Physo143656;constitutive=1;ensembl_phase=2;rank=2 scaffold_147 . CDS 37031 37905 . - 0 ID=Physo143656;Parent=Physo143656;rank=1 scaffold_147 . exon 37031 37905 . - . ID=Physo143656.1;Parent=Physo143656;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_147 . repeat_region 40483 40869 . ? . description=dust scaffold_147 . biological_region 42075 42075 0.999 - . logic_name=eponine scaffold_147 . repeat_region 45258 45295 . ? . description=trf scaffold_147 . repeat_region 45258 45295 . ? . description=dust scaffold_147 . repeat_region 46493 46629 . ? . description=trf scaffold_147 . repeat_region 46848 46883 . ? . description=trf scaffold_147 . repeat_region 47265 47322 . ? . description=trf scaffold_147 . biological_region 48160 48161 0.999 + . logic_name=eponine scaffold_147 ensembl protein_coding_gene 40031 43781 . + . ID=Physo143657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470005;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 40031 43781 . + . ID=Physo143657;Parent=Physo143657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 40031 40477 . + 0 ID=Physo143657;Parent=Physo143657;rank=1 scaffold_147 . exon 40031 40477 . + . ID=Physo143657.1;Parent=Physo143657;constitutive=1;rank=1 scaffold_147 . CDS 40913 41719 . + 0 ID=Physo143657;Parent=Physo143657;rank=2 scaffold_147 . exon 40913 41719 . + . ID=Physo143657.2;Parent=Physo143657;constitutive=1;rank=2 scaffold_147 . CDS 41817 43781 . + 0 ID=Physo143657;Parent=Physo143657;rank=3 scaffold_147 . exon 41817 43781 . + . ID=Physo143657.3;Parent=Physo143657;constitutive=1;rank=3 scaffold_147 ensembl protein_coding_gene 46919 49422 . - . ID=Physo143658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470006;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 46919 49422 . - . ID=Physo143658;Parent=Physo143658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 46919 46929 . - 0 ID=Physo143658;Parent=Physo143658;rank=9 scaffold_147 . exon 46919 46929 . - . ID=Physo143658.9;Parent=Physo143658;constitutive=1;ensembl_phase=1;rank=9 scaffold_147 . CDS 47054 47251 . - 0 ID=Physo143658;Parent=Physo143658;rank=8 scaffold_147 . exon 47054 47251 . - . ID=Physo143658.8;Parent=Physo143658;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_147 . CDS 47289 47351 . - 0 ID=Physo143658;Parent=Physo143658;rank=7 scaffold_147 . exon 47289 47351 . - . ID=Physo143658.7;Parent=Physo143658;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_147 . CDS 47392 47469 . - 0 ID=Physo143658;Parent=Physo143658;rank=6 scaffold_147 . exon 47392 47469 . - . ID=Physo143658.6;Parent=Physo143658;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_147 . CDS 47777 47838 . - 0 ID=Physo143658;Parent=Physo143658;rank=5 scaffold_147 . exon 47777 47838 . - . ID=Physo143658.5;Parent=Physo143658;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_147 . CDS 47863 47955 . - 0 ID=Physo143658;Parent=Physo143658;rank=4 scaffold_147 . exon 47863 47955 . - . ID=Physo143658.4;Parent=Physo143658;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_147 . CDS 48015 48344 . - 0 ID=Physo143658;Parent=Physo143658;rank=3 scaffold_147 . exon 48015 48344 . - . ID=Physo143658.3;Parent=Physo143658;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_147 . CDS 48652 49102 . - 0 ID=Physo143658;Parent=Physo143658;rank=2 scaffold_147 . exon 48652 49102 . - . ID=Physo143658.2;Parent=Physo143658;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_147 . CDS 49134 49422 . - 0 ID=Physo143658;Parent=Physo143658;rank=1 scaffold_147 ensembl protein_coding_gene 50209 50604 . - . ID=Physo109575;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1470001;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 50209 50604 . - . ID=Physo109575;Parent=Physo109575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 50209 50604 . - 0 ID=Physo109575;Parent=Physo109575;rank=1 scaffold_147 . exon 50209 50604 . - . ID=Physo109575.1;Parent=Physo109575;constitutive=1;rank=1 scaffold_147 ensembl protein_coding_gene 49429 49785 . - . ID=Physo124070;biotype=protein_coding;external_name=estExt_Genewise1.C_1470008;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 49429 49785 . - . ID=Physo124070;Parent=Physo124070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 49429 49737 . - 0 ID=Physo124070;Parent=Physo124070;rank=1 scaffold_147 . exon 49429 49785 . - . ID=Physo124070.1;Parent=Physo124070;constitutive=1;ensembl_phase=-1;rank=1 scaffold_147 ensembl protein_coding_gene 58009 58479 . - . ID=Physo124077;biotype=protein_coding;external_name=estExt_Genewise1.C_1470015;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 58009 58479 . - . ID=Physo124077;Parent=Physo124077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 58009 58479 . - 0 ID=Physo124077;Parent=Physo124077;rank=1 scaffold_147 . exon 58009 58479 . - . ID=Physo124077.1;Parent=Physo124077;constitutive=1;rank=1 scaffold_147 . exon 49134 49422 . - . ID=Physo143658.1;Parent=Physo143658;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_147 ensembl protein_coding_gene 50833 52854 . - . ID=Physo143660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470008;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 50833 52854 . - . ID=Physo143660;Parent=Physo143660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 50833 52854 . - 0 ID=Physo143660;Parent=Physo143660;rank=1 scaffold_147 . exon 50833 52854 . - . ID=Physo143660.1;Parent=Physo143660;constitutive=1;rank=1 scaffold_147 . biological_region 58956 58957 0.999 - . logic_name=eponine scaffold_147 . repeat_region 59202 59211 . ? . description=dust scaffold_147 . biological_region 59247 59254 0.999 + . logic_name=eponine scaffold_147 . biological_region 59271 59276 0.999 + . logic_name=eponine scaffold_147 . biological_region 59351 59354 0.999 - . logic_name=eponine scaffold_147 . biological_region 60463 60467 0.999 - . logic_name=eponine scaffold_147 . repeat_region 60994 61036 . ? . description=trf scaffold_147 . biological_region 67874 67879 0.999 + . logic_name=eponine scaffold_147 . biological_region 68175 68179 0.999 + . logic_name=eponine scaffold_147 . biological_region 68214 68216 0.999 + . logic_name=eponine scaffold_147 . biological_region 68253 68260 0.999 - . logic_name=eponine scaffold_147 ensembl protein_coding_gene 67743 68438 . - . ID=Physo109576;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1470002;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 67743 68438 . - . ID=Physo109576;Parent=Physo109576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . exon 67743 68438 . - . ID=Physo109576.1;Parent=Physo109576;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_147 . CDS 67747 68436 . - 0 ID=Physo109576;Parent=Physo109576;rank=1 scaffold_147 ensembl protein_coding_gene 59298 67628 . + . ID=Physo143662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470010;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 59298 67628 . + . ID=Physo143662;Parent=Physo143662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 59298 59354 . + 0 ID=Physo143662;Parent=Physo143662;rank=1 scaffold_147 . exon 59298 59354 . + . ID=Physo143662.1;Parent=Physo143662;constitutive=1;rank=1 scaffold_147 . CDS 59427 59481 . + 0 ID=Physo143662;Parent=Physo143662;rank=2 scaffold_147 . exon 59427 59481 . + . ID=Physo143662.2;Parent=Physo143662;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_147 . CDS 59562 59940 . + 0 ID=Physo143662;Parent=Physo143662;rank=3 scaffold_147 . exon 59562 59940 . + . ID=Physo143662.3;Parent=Physo143662;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_147 . CDS 60010 61149 . + 0 ID=Physo143662;Parent=Physo143662;rank=4 scaffold_147 . exon 60010 61149 . + . ID=Physo143662.4;Parent=Physo143662;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_147 . CDS 61302 61504 . + 0 ID=Physo143662;Parent=Physo143662;rank=5 scaffold_147 . exon 61302 61504 . + . ID=Physo143662.5;Parent=Physo143662;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_147 . CDS 61598 61692 . + 0 ID=Physo143662;Parent=Physo143662;rank=6 scaffold_147 . exon 61598 61692 . + . ID=Physo143662.6;Parent=Physo143662;constitutive=1;ensembl_phase=1;rank=6 scaffold_147 . CDS 61750 61806 . + 0 ID=Physo143662;Parent=Physo143662;rank=7 scaffold_147 . exon 61750 61806 . + . ID=Physo143662.7;Parent=Physo143662;constitutive=1;rank=7 scaffold_147 . CDS 61895 62134 . + 0 ID=Physo143662;Parent=Physo143662;rank=8 scaffold_147 . exon 61895 62134 . + . ID=Physo143662.8;Parent=Physo143662;constitutive=1;rank=8 scaffold_147 . CDS 62211 63963 . + 0 ID=Physo143662;Parent=Physo143662;rank=9 scaffold_147 . exon 62211 63963 . + . ID=Physo143662.9;Parent=Physo143662;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_147 . CDS 64129 66626 . + 0 ID=Physo143662;Parent=Physo143662;rank=10 scaffold_147 . exon 64129 66626 . + . ID=Physo143662.10;Parent=Physo143662;constitutive=1;ensembl_phase=1;rank=10 scaffold_147 . CDS 66701 66797 . + 0 ID=Physo143662;Parent=Physo143662;rank=11 scaffold_147 . exon 66701 66797 . + . ID=Physo143662.11;Parent=Physo143662;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_147 . CDS 66927 67302 . + 0 ID=Physo143662;Parent=Physo143662;rank=12 scaffold_147 . exon 66927 67302 . + . ID=Physo143662.12;Parent=Physo143662;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_147 . CDS 67367 67628 . + 0 ID=Physo143662;Parent=Physo143662;rank=13 scaffold_147 . exon 67367 67628 . + . ID=Physo143662.13;Parent=Physo143662;constitutive=1;ensembl_phase=2;rank=13 scaffold_147 ensembl protein_coding_gene 70584 72221 . + . ID=Physo143664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470012;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 70584 72221 . + . ID=Physo143664;Parent=Physo143664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 70584 72221 . + 0 ID=Physo143664;Parent=Physo143664;rank=1 scaffold_147 . exon 70584 72221 . + . ID=Physo143664.1;Parent=Physo143664;constitutive=1;rank=1 scaffold_147 ensembl protein_coding_gene 72385 73482 . + . ID=Physo143665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470013;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 72385 73482 . + . ID=Physo143665;Parent=Physo143665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 72385 72603 . + 0 ID=Physo143665;Parent=Physo143665;rank=1 scaffold_147 . exon 72385 72603 . + . ID=Physo143665.1;Parent=Physo143665;constitutive=1;rank=1 scaffold_147 . CDS 72683 73216 . + 0 ID=Physo143665;Parent=Physo143665;rank=2 scaffold_147 . exon 72683 73216 . + . ID=Physo143665.2;Parent=Physo143665;constitutive=1;rank=2 scaffold_147 . CDS 73414 73482 . + 0 ID=Physo143665;Parent=Physo143665;rank=3 scaffold_147 . exon 73414 73482 . + . ID=Physo143665.3;Parent=Physo143665;constitutive=1;rank=3 scaffold_147 ensembl protein_coding_gene 76427 78020 . - . ID=Physo143666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470014;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 76427 78020 . - . ID=Physo143666;Parent=Physo143666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 76427 76651 . - 0 ID=Physo143666;Parent=Physo143666;rank=3 scaffold_147 . exon 76427 76651 . - . ID=Physo143666.3;Parent=Physo143666;constitutive=1;rank=3 scaffold_147 . CDS 76818 76908 . - 0 ID=Physo143666;Parent=Physo143666;rank=2 scaffold_147 . exon 76818 76908 . - . ID=Physo143666.2;Parent=Physo143666;constitutive=1;ensembl_phase=2;rank=2 scaffold_147 . CDS 76987 78020 . - 0 ID=Physo143666;Parent=Physo143666;rank=1 scaffold_147 . exon 76987 78020 . - . ID=Physo143666.1;Parent=Physo143666;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_147 . repeat_region 80100 80155 . ? . description=trf scaffold_147 . repeat_region 80155 80257 . ? . description=trf scaffold_147 . biological_region 81269 81270 0.999 + . logic_name=eponine scaffold_147 . repeat_region 81601 83603 . ? . description=dust scaffold_147 . repeat_region 84409 84464 . ? . description=trf scaffold_147 . repeat_region 84464 84566 . ? . description=trf scaffold_147 . biological_region 86991 86992 0.999 + . logic_name=eponine scaffold_147 . biological_region 87151 87152 0.999 - . logic_name=eponine scaffold_147 . biological_region 87265 87270 0.999 - . logic_name=eponine scaffold_147 . biological_region 87818 87824 0.999 + . logic_name=eponine scaffold_147 ensembl pseudogenic_tRNA 87213 87284 . + . ID=EPrPSOG00000000196;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_147 ensembl transcript 87213 87284 . + . ID=EPrPSOT00000000196;Parent=EPrPSOG00000000196;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_147 . exon 87213 87284 . + . ID=EPrPSOE00000000196;Parent=EPrPSOT00000000196;constitutive=1;rank=1 scaffold_147 ensembl protein_coding_gene 87298 93259 . - . ID=Physo143667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470015;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 87298 93259 . - . ID=Physo143667;Parent=Physo143667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 87298 88152 . - 0 ID=Physo143667;Parent=Physo143667;rank=4 scaffold_147 . exon 87298 88152 . - . ID=Physo143667.4;Parent=Physo143667;constitutive=1;rank=4 scaffold_147 . CDS 88323 90011 . - 0 ID=Physo143667;Parent=Physo143667;rank=3 scaffold_147 . CDS 90055 92057 . - 0 ID=Physo143667;Parent=Physo143667;rank=2 scaffold_147 . CDS 92398 93259 . - 0 ID=Physo143667;Parent=Physo143667;rank=1 scaffold_147 . repeat_region 88371 89152 . - . description=GypsyPi-1c_I-int scaffold_147 . repeat_region 89446 90773 . - . description=GypsyPi-1c_I-int scaffold_147 . repeat_region 91798 91859 . - . description=GypsyPi-1c_I-int scaffold_147 . exon 88323 90011 . - . ID=Physo143667.3;Parent=Physo143667;constitutive=1;rank=3 scaffold_147 . exon 90055 92057 . - . ID=Physo143667.2;Parent=Physo143667;constitutive=1;ensembl_phase=1;rank=2 scaffold_147 . exon 92398 93259 . - . ID=Physo143667.1;Parent=Physo143667;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_147 ensembl protein_coding_gene 94723 97773 . - . ID=Physo143668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470016;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 94723 97773 . - . ID=Physo143668;Parent=Physo143668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 94723 97773 . - 0 ID=Physo143668;Parent=Physo143668;rank=1 scaffold_147 . exon 94723 97773 . - . ID=Physo143668.1;Parent=Physo143668;constitutive=1;rank=1 scaffold_147 . repeat_region 97831 98730 . ? . description=dust scaffold_147 . repeat_region 98898 98980 . ? . description=trf scaffold_147 . repeat_region 98898 98982 . ? . description=trf scaffold_147 . biological_region 99011 99015 0.999 - . logic_name=eponine scaffold_147 . repeat_region 99856 101692 . ? . description=dust scaffold_147 . repeat_region 101693 104605 . ? . description=dust scaffold_147 ensembl protein_coding_gene 104606 105253 . + . ID=Physo109577;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1470003;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 104606 105253 . + . ID=Physo109577;Parent=Physo109577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . exon 104606 105253 . + . ID=Physo109577.1;Parent=Physo109577;constitutive=1;ensembl_phase=-1;rank=1 scaffold_147 . CDS 104609 105253 . + 0 ID=Physo109577;Parent=Physo109577;rank=1 scaffold_147 ensembl protein_coding_gene 108831 114011 . + . ID=Physo143670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470018;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 108831 114011 . + . ID=Physo143670;Parent=Physo143670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 108831 109291 . + 0 ID=Physo143670;Parent=Physo143670;rank=1 scaffold_147 . exon 108831 109291 . + . ID=Physo143670.1;Parent=Physo143670;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_147 . CDS 109369 109379 . + 0 ID=Physo143670;Parent=Physo143670;rank=2 scaffold_147 . exon 109369 109379 . + . ID=Physo143670.2;Parent=Physo143670;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_147 . CDS 109496 111021 . + 0 ID=Physo143670;Parent=Physo143670;rank=3 scaffold_147 . exon 109496 111021 . + . ID=Physo143670.3;Parent=Physo143670;constitutive=1;ensembl_phase=1;rank=3 scaffold_147 . CDS 111260 111826 . + 0 ID=Physo143670;Parent=Physo143670;rank=4 scaffold_147 . exon 111260 111826 . + . ID=Physo143670.4;Parent=Physo143670;constitutive=1;rank=4 scaffold_147 . CDS 113262 114011 . + 0 ID=Physo143670;Parent=Physo143670;rank=5 scaffold_147 . exon 113262 114011 . + . ID=Physo143670.5;Parent=Physo143670;constitutive=1;rank=5 scaffold_147 ensembl protein_coding_gene 115392 116609 . + . ID=Physo143671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470019;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 115392 116609 . + . ID=Physo143671;Parent=Physo143671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 115392 115641 . + 0 ID=Physo143671;Parent=Physo143671;rank=1 scaffold_147 . exon 115392 115641 . + . ID=Physo143671.1;Parent=Physo143671;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_147 . CDS 115725 115779 . + 0 ID=Physo143671;Parent=Physo143671;rank=2 scaffold_147 . exon 115725 115779 . + . ID=Physo143671.2;Parent=Physo143671;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_147 . CDS 115821 116101 . + 0 ID=Physo143671;Parent=Physo143671;rank=3 scaffold_147 . exon 115821 116101 . + . ID=Physo143671.3;Parent=Physo143671;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_147 . CDS 116173 116609 . + 0 ID=Physo143671;Parent=Physo143671;rank=4 scaffold_147 . exon 116173 116609 . + . ID=Physo143671.4;Parent=Physo143671;constitutive=1;ensembl_phase=1;rank=4 scaffold_147 . repeat_region 118516 118523 . ? . description=dust scaffold_147 . repeat_region 126839 126874 . ? . description=trf scaffold_147 . repeat_region 126935 126987 . ? . description=trf scaffold_147 ensembl protein_coding_gene 118031 121213 . + . ID=Physo143672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470020;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 118031 121213 . + . ID=Physo143672;Parent=Physo143672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 118031 118102 . + 0 ID=Physo143672;Parent=Physo143672;rank=1 scaffold_147 . exon 118031 118102 . + . ID=Physo143672.1;Parent=Physo143672;constitutive=1;rank=1 scaffold_147 . CDS 118182 119450 . + 0 ID=Physo143672;Parent=Physo143672;rank=2 scaffold_147 . exon 118182 119450 . + . ID=Physo143672.2;Parent=Physo143672;constitutive=1;rank=2 scaffold_147 . CDS 119627 121213 . + 0 ID=Physo143672;Parent=Physo143672;rank=3 scaffold_147 . exon 119627 121213 . + . ID=Physo143672.3;Parent=Physo143672;constitutive=1;rank=3 scaffold_147 ensembl protein_coding_gene 121426 126587 . - . ID=Physo143673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1470021;logic_name=jgi_physo1_1 scaffold_147 ensembl transcript 121426 126587 . - . ID=Physo143673;Parent=Physo143673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_147 . CDS 121426 122844 . - 0 ID=Physo143673;Parent=Physo143673;rank=7 scaffold_147 . exon 121426 122844 . - . ID=Physo143673.7;Parent=Physo143673;constitutive=1;rank=7 scaffold_147 . CDS 123200 123389 . - 0 ID=Physo143673;Parent=Physo143673;rank=6 scaffold_147 . exon 123200 123389 . - . ID=Physo143673.6;Parent=Physo143673;constitutive=1;ensembl_phase=2;rank=6 scaffold_147 . CDS 123546 123743 . - 0 ID=Physo143673;Parent=Physo143673;rank=5 scaffold_147 . exon 123546 123743 . - . ID=Physo143673.5;Parent=Physo143673;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_147 . CDS 123785 123846 . - 0 ID=Physo143673;Parent=Physo143673;rank=4 scaffold_147 . exon 123785 123846 . - . ID=Physo143673.4;Parent=Physo143673;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_147 . CDS 124348 125159 . - 0 ID=Physo143673;Parent=Physo143673;rank=3 scaffold_147 . exon 124348 125159 . - . ID=Physo143673.3;Parent=Physo143673;constitutive=1;ensembl_phase=1;rank=3 scaffold_147 . CDS 125281 126506 . - 0 ID=Physo143673;Parent=Physo143673;rank=2 scaffold_147 . exon 125281 126506 . - . ID=Physo143673.2;Parent=Physo143673;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_147 . CDS 126577 126587 . - 0 ID=Physo143673;Parent=Physo143673;rank=1 scaffold_147 . exon 126577 126587 . - . ID=Physo143673.1;Parent=Physo143673;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_148 1 127129 scaffold_148 . biological_region 201 203 0.999 + . logic_name=eponine scaffold_148 . repeat_region 1722 1742 . ? . description=trf scaffold_148 . biological_region 2534 2538 0.999 + . logic_name=eponine scaffold_148 . biological_region 2579 2583 0.999 + . logic_name=eponine scaffold_148 . biological_region 2984 2987 0.999 - . logic_name=eponine scaffold_148 . biological_region 3008 3012 0.999 - . logic_name=eponine scaffold_148 . biological_region 3701 3704 0.999 + . logic_name=eponine scaffold_148 . biological_region 3731 3734 0.999 - . logic_name=eponine scaffold_148 . biological_region 3738 3743 0.999 - . logic_name=eponine scaffold_148 . biological_region 3788 3792 0.999 - . logic_name=eponine scaffold_148 . biological_region 4935 4937 0.999 + . logic_name=eponine scaffold_148 . biological_region 5088 5089 0.999 + . logic_name=eponine scaffold_148 . biological_region 5118 5119 0.999 - . logic_name=eponine scaffold_148 . biological_region 5782 5786 0.999 + . logic_name=eponine scaffold_148 . biological_region 5807 5810 0.999 + . logic_name=eponine scaffold_148 . repeat_region 9028 9107 . + . description=Polinton-1_PI scaffold_148 ensembl protein_coding_gene 192 689 . + . ID=Physo143674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480001;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 192 689 . + . ID=Physo143674;Parent=Physo143674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 192 689 . + 0 ID=Physo143674;Parent=Physo143674;rank=1 scaffold_148 . exon 192 689 . + . ID=Physo143674.1;Parent=Physo143674;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 2156 3877 . - . ID=Physo143675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480002;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 2156 3877 . - . ID=Physo143675;Parent=Physo143675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 2156 3877 . - 0 ID=Physo143675;Parent=Physo143675;rank=1 scaffold_148 . exon 2156 3877 . - . ID=Physo143675.1;Parent=Physo143675;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 4940 6428 . + . ID=Physo143676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480003;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 4940 6428 . + . ID=Physo143676;Parent=Physo143676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 4940 6246 . + 0 ID=Physo143676;Parent=Physo143676;rank=1 scaffold_148 . exon 4940 6246 . + . ID=Physo143676.1;Parent=Physo143676;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_148 . CDS 6401 6428 . + 0 ID=Physo143676;Parent=Physo143676;rank=2 scaffold_148 . exon 6401 6428 . + . ID=Physo143676.2;Parent=Physo143676;constitutive=1;ensembl_phase=2;rank=2 scaffold_148 ensembl protein_coding_gene 8945 10100 . + . ID=Physo143677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480004;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 8945 10100 . + . ID=Physo143677;Parent=Physo143677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 8945 9433 . + 0 ID=Physo143677;Parent=Physo143677;rank=1 scaffold_148 . exon 8945 9433 . + . ID=Physo143677.1;Parent=Physo143677;constitutive=1;rank=1 scaffold_148 . CDS 9463 9987 . + 0 ID=Physo143677;Parent=Physo143677;rank=2 scaffold_148 . exon 9463 9987 . + . ID=Physo143677.2;Parent=Physo143677;constitutive=1;rank=2 scaffold_148 . CDS 10041 10100 . + 0 ID=Physo143677;Parent=Physo143677;rank=3 scaffold_148 . repeat_region 12065 12088 . ? . description=dust scaffold_148 . exon 10041 10100 . + . ID=Physo143677.3;Parent=Physo143677;constitutive=1;rank=3 scaffold_148 ensembl protein_coding_gene 10776 11729 . + . ID=Physo143678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480005;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 10776 11729 . + . ID=Physo143678;Parent=Physo143678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 10776 10909 . + 0 ID=Physo143678;Parent=Physo143678;rank=1 scaffold_148 . exon 10776 10909 . + . ID=Physo143678.1;Parent=Physo143678;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_148 . CDS 10968 11049 . + 0 ID=Physo143678;Parent=Physo143678;rank=2 scaffold_148 . exon 10968 11049 . + . ID=Physo143678.2;Parent=Physo143678;constitutive=1;ensembl_phase=2;rank=2 scaffold_148 . CDS 11122 11226 . + 0 ID=Physo143678;Parent=Physo143678;rank=3 scaffold_148 . exon 11122 11226 . + . ID=Physo143678.3;Parent=Physo143678;constitutive=1;rank=3 scaffold_148 . CDS 11304 11729 . + 0 ID=Physo143678;Parent=Physo143678;rank=4 scaffold_148 . exon 11304 11729 . + . ID=Physo143678.4;Parent=Physo143678;constitutive=1;rank=4 scaffold_148 ensembl protein_coding_gene 18031 19103 . - . ID=Physo143679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480006;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 18031 19103 . - . ID=Physo143679;Parent=Physo143679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 18031 18178 . - 0 ID=Physo143679;Parent=Physo143679;rank=4 scaffold_148 . exon 18031 18178 . - . ID=Physo143679.4;Parent=Physo143679;constitutive=1;ensembl_phase=2;rank=4 scaffold_148 . CDS 18269 18750 . - 0 ID=Physo143679;Parent=Physo143679;rank=3 scaffold_148 . exon 18269 18750 . - . ID=Physo143679.3;Parent=Physo143679;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_148 . CDS 18826 18907 . - 0 ID=Physo143679;Parent=Physo143679;rank=2 scaffold_148 . exon 18826 18907 . - . ID=Physo143679.2;Parent=Physo143679;constitutive=1;ensembl_phase=2;rank=2 scaffold_148 . CDS 18970 19103 . - 0 ID=Physo143679;Parent=Physo143679;rank=1 scaffold_148 . exon 18970 19103 . - . ID=Physo143679.1;Parent=Physo143679;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_148 . repeat_region 21105 21193 . ? . description=trf scaffold_148 . repeat_region 23429 23663 . ? . description=trf scaffold_148 ensembl protein_coding_gene 24568 25308 . + . ID=Physo109578;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1480001;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 24568 25308 . + . ID=Physo109578;Parent=Physo109578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 24568 25308 . + 0 ID=Physo109578;Parent=Physo109578;rank=1 scaffold_148 . exon 24568 25308 . + . ID=Physo109578.1;Parent=Physo109578;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 26434 26691 . - . ID=Physo124101;biotype=protein_coding;external_name=estExt_Genewise1.C_1480005;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 26434 26691 . - . ID=Physo124101;Parent=Physo124101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 26434 26649 . - 0 ID=Physo124101;Parent=Physo124101;rank=1 scaffold_148 . exon 26434 26691 . - . ID=Physo124101.1;Parent=Physo124101;constitutive=1;ensembl_phase=-1;rank=1 scaffold_148 ensembl protein_coding_gene 22699 23547 . + . ID=Physo143680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480007;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 22699 23547 . + . ID=Physo143680;Parent=Physo143680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 22699 23547 . + 0 ID=Physo143680;Parent=Physo143680;rank=1 scaffold_148 . exon 22699 23547 . + . ID=Physo143680.1;Parent=Physo143680;constitutive=1;rank=1 scaffold_148 . repeat_region 30324 30412 . ? . description=dust scaffold_148 . repeat_region 30420 30481 . ? . description=dust scaffold_148 . biological_region 36393 36398 0.999 - . logic_name=eponine scaffold_148 . biological_region 36419 36420 0.999 + . logic_name=eponine scaffold_148 . biological_region 36449 36452 0.999 + . logic_name=eponine scaffold_148 . biological_region 37764 37772 0.999 + . logic_name=eponine scaffold_148 . biological_region 37819 37824 0.999 + . logic_name=eponine scaffold_148 . biological_region 37853 37856 0.999 + . logic_name=eponine scaffold_148 . biological_region 37856 37872 0.999 - . logic_name=eponine scaffold_148 . biological_region 38605 38608 0.999 + . logic_name=eponine scaffold_148 ensembl protein_coding_gene 30108 31118 . + . ID=Physo143683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480010;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 30108 31118 . + . ID=Physo143683;Parent=Physo143683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 30108 30508 . + 0 ID=Physo143683;Parent=Physo143683;rank=1 scaffold_148 . exon 30108 30508 . + . ID=Physo143683.1;Parent=Physo143683;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_148 . CDS 30617 31118 . + 0 ID=Physo143683;Parent=Physo143683;rank=2 scaffold_148 . exon 30617 31118 . + . ID=Physo143683.2;Parent=Physo143683;constitutive=1;ensembl_phase=2;rank=2 scaffold_148 ensembl protein_coding_gene 37213 39607 . - . ID=Physo143684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480011;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 37213 39607 . - . ID=Physo143684;Parent=Physo143684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 37213 37629 . - 0 ID=Physo143684;Parent=Physo143684;rank=4 scaffold_148 . exon 37213 37629 . - . ID=Physo143684.4;Parent=Physo143684;constitutive=1;rank=4 scaffold_148 . CDS 37688 38305 . - 0 ID=Physo143684;Parent=Physo143684;rank=3 scaffold_148 . exon 37688 38305 . - . ID=Physo143684.3;Parent=Physo143684;constitutive=1;rank=3 scaffold_148 . CDS 38388 39151 . - 0 ID=Physo143684;Parent=Physo143684;rank=2 scaffold_148 . exon 38388 39151 . - . ID=Physo143684.2;Parent=Physo143684;constitutive=1;ensembl_phase=1;rank=2 scaffold_148 . CDS 39262 39607 . - 0 ID=Physo143684;Parent=Physo143684;rank=1 scaffold_148 . repeat_region 39616 39678 . ? . description=trf scaffold_148 . repeat_region 39616 39684 . ? . description=trf scaffold_148 . repeat_region 39618 39680 . ? . description=trf scaffold_148 . repeat_region 39626 39690 . ? . description=trf scaffold_148 . exon 39262 39607 . - . ID=Physo143684.1;Parent=Physo143684;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_148 ensembl protein_coding_gene 43461 46238 . + . ID=Physo143685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480012;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 43461 46238 . + . ID=Physo143685;Parent=Physo143685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 43461 46238 . + 0 ID=Physo143685;Parent=Physo143685;rank=1 scaffold_148 . exon 43461 46238 . + . ID=Physo143685.1;Parent=Physo143685;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 46949 48676 . + . ID=Physo143686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480013;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 46949 48676 . + . ID=Physo143686;Parent=Physo143686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 46949 48676 . + 0 ID=Physo143686;Parent=Physo143686;rank=1 scaffold_148 . exon 46949 48676 . + . ID=Physo143686.1;Parent=Physo143686;constitutive=1;rank=1 scaffold_148 . biological_region 50359 50359 0.999 + . logic_name=eponine scaffold_148 . biological_region 50798 50802 0.999 - . logic_name=eponine scaffold_148 . biological_region 53802 53804 0.999 - . logic_name=eponine scaffold_148 . biological_region 54113 54118 0.999 + . logic_name=eponine scaffold_148 ensembl protein_coding_gene 49158 51363 . - . ID=Physo143687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480014;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 49158 51363 . - . ID=Physo143687;Parent=Physo143687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 49158 51153 . - 0 ID=Physo143687;Parent=Physo143687;rank=2 scaffold_148 . exon 49158 51153 . - . ID=Physo143687.2;Parent=Physo143687;constitutive=1;ensembl_phase=2;rank=2 scaffold_148 . CDS 51257 51363 . - 0 ID=Physo143687;Parent=Physo143687;rank=1 scaffold_148 . exon 51257 51363 . - . ID=Physo143687.1;Parent=Physo143687;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_148 ensembl protein_coding_gene 53378 55177 . + . ID=Physo143688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480015;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 53378 55177 . + . ID=Physo143688;Parent=Physo143688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 53378 53791 . + 0 ID=Physo143688;Parent=Physo143688;rank=1 scaffold_148 . exon 53378 53791 . + . ID=Physo143688.1;Parent=Physo143688;constitutive=1;rank=1 scaffold_148 . CDS 54054 54127 . + 0 ID=Physo143688;Parent=Physo143688;rank=2 scaffold_148 . exon 54054 54127 . + . ID=Physo143688.2;Parent=Physo143688;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_148 . CDS 54214 54319 . + 0 ID=Physo143688;Parent=Physo143688;rank=3 scaffold_148 . exon 54214 54319 . + . ID=Physo143688.3;Parent=Physo143688;constitutive=1;ensembl_phase=2;rank=3 scaffold_148 . CDS 54410 54562 . + 0 ID=Physo143688;Parent=Physo143688;rank=4 scaffold_148 . exon 54410 54562 . + . ID=Physo143688.4;Parent=Physo143688;constitutive=1;rank=4 scaffold_148 . CDS 54659 54721 . + 0 ID=Physo143688;Parent=Physo143688;rank=5 scaffold_148 . exon 54659 54721 . + . ID=Physo143688.5;Parent=Physo143688;constitutive=1;rank=5 scaffold_148 . CDS 54800 55006 . + 0 ID=Physo143688;Parent=Physo143688;rank=6 scaffold_148 . exon 54800 55177 . + . ID=Physo143688.6;Parent=Physo143688;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_148 ensembl protein_coding_gene 55359 57445 . + . ID=Physo143689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480016;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 55359 57445 . + . ID=Physo143689;Parent=Physo143689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 55359 56096 . + 0 ID=Physo143689;Parent=Physo143689;rank=1 scaffold_148 . exon 55359 56096 . + . ID=Physo143689.1;Parent=Physo143689;constitutive=1;rank=1 scaffold_148 . CDS 56437 56565 . + 0 ID=Physo143689;Parent=Physo143689;rank=2 scaffold_148 . exon 56437 56565 . + . ID=Physo143689.2;Parent=Physo143689;constitutive=1;rank=2 scaffold_148 . CDS 56714 57445 . + 0 ID=Physo143689;Parent=Physo143689;rank=3 scaffold_148 . exon 56714 57445 . + . ID=Physo143689.3;Parent=Physo143689;constitutive=1;rank=3 scaffold_148 ensembl protein_coding_gene 57541 58525 . - . ID=Physo158806;biotype=protein_coding;external_name=C_scaffold_148000001;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 57541 58525 . - . ID=Physo158806;Parent=Physo158806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 57541 57870 . - 0 ID=Physo158806;Parent=Physo158806;rank=4 scaffold_148 . exon 57541 57870 . - . ID=Physo158806.4;Parent=Physo158806;constitutive=1;rank=4 scaffold_148 . CDS 57933 58073 . - 0 ID=Physo158806;Parent=Physo158806;rank=3 scaffold_148 . exon 57933 58073 . - . ID=Physo158806.3;Parent=Physo158806;constitutive=1;rank=3 scaffold_148 . CDS 58145 58359 . - 0 ID=Physo158806;Parent=Physo158806;rank=2 scaffold_148 . exon 58145 58359 . - . ID=Physo158806.2;Parent=Physo158806;constitutive=1;ensembl_phase=1;rank=2 scaffold_148 . CDS 58432 58525 . - 0 ID=Physo158806;Parent=Physo158806;rank=1 scaffold_148 . exon 58432 58525 . - . ID=Physo158806.1;Parent=Physo158806;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_148 ensembl protein_coding_gene 58677 61151 . + . ID=Physo158807;biotype=protein_coding;external_name=C_scaffold_148000002;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 58677 61151 . + . ID=Physo158807;Parent=Physo158807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 58677 58726 . + 0 ID=Physo158807;Parent=Physo158807;rank=1 scaffold_148 . exon 58677 58726 . + . ID=Physo158807.1;Parent=Physo158807;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_148 . CDS 59279 59434 . + 0 ID=Physo158807;Parent=Physo158807;rank=2 scaffold_148 . CDS 59854 60447 . + 0 ID=Physo158807;Parent=Physo158807;rank=3 scaffold_148 . CDS 60610 60805 . + 0 ID=Physo158807;Parent=Physo158807;rank=4 scaffold_148 . CDS 60848 61054 . + 0 ID=Physo158807;Parent=Physo158807;rank=5 scaffold_148 . CDS 61110 61151 . + 0 ID=Physo158807;Parent=Physo158807;rank=6 scaffold_148 ensembl protein_coding_gene 66585 68368 . + . ID=Physo124111;biotype=protein_coding;external_name=estExt_Genewise1.C_1480015;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 66585 68368 . + . ID=Physo124111;Parent=Physo124111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . exon 66585 66704 . + . ID=Physo124111.1;Parent=Physo124111;constitutive=1;ensembl_phase=-1;rank=1 scaffold_148 . CDS 66612 66704 . + 0 ID=Physo124111;Parent=Physo124111;rank=1 scaffold_148 . CDS 66796 66829 . + 0 ID=Physo124111;Parent=Physo124111;rank=2 scaffold_148 . exon 66796 66829 . + . ID=Physo124111.2;Parent=Physo124111;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_148 . CDS 66901 66953 . + 0 ID=Physo124111;Parent=Physo124111;rank=3 scaffold_148 . exon 66901 66953 . + . ID=Physo124111.3;Parent=Physo124111;constitutive=1;ensembl_phase=1;rank=3 scaffold_148 . CDS 67029 67133 . + 0 ID=Physo124111;Parent=Physo124111;rank=4 scaffold_148 . exon 67029 67133 . + . ID=Physo124111.4;Parent=Physo124111;constitutive=1;rank=4 scaffold_148 . CDS 67209 68180 . + 0 ID=Physo124111;Parent=Physo124111;rank=5 scaffold_148 . exon 67209 68368 . + . ID=Physo124111.5;Parent=Physo124111;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_148 ensembl protein_coding_gene 62823 64239 . + . ID=Physo143692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480019;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 62823 64239 . + . ID=Physo143692;Parent=Physo143692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 62823 63332 . + 0 ID=Physo143692;Parent=Physo143692;rank=1 scaffold_148 . exon 62823 63332 . + . ID=Physo143692.1;Parent=Physo143692;constitutive=1;rank=1 scaffold_148 . CDS 63433 63666 . + 0 ID=Physo143692;Parent=Physo143692;rank=2 scaffold_148 . exon 63433 63666 . + . ID=Physo143692.2;Parent=Physo143692;constitutive=1;rank=2 scaffold_148 . CDS 63741 63881 . + 0 ID=Physo143692;Parent=Physo143692;rank=3 scaffold_148 . exon 63741 63881 . + . ID=Physo143692.3;Parent=Physo143692;constitutive=1;rank=3 scaffold_148 . CDS 63952 64173 . + 0 ID=Physo143692;Parent=Physo143692;rank=4 scaffold_148 . exon 63952 64239 . + . ID=Physo143692.4;Parent=Physo143692;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_148 . exon 59279 59434 . + . ID=Physo158807.2;Parent=Physo158807;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_148 . exon 59854 60447 . + . ID=Physo158807.3;Parent=Physo158807;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_148 . exon 60610 60805 . + . ID=Physo158807.4;Parent=Physo158807;constitutive=1;ensembl_phase=2;rank=4 scaffold_148 . exon 60848 61054 . + . ID=Physo158807.5;Parent=Physo158807;constitutive=1;rank=5 scaffold_148 . exon 61110 61151 . + . ID=Physo158807.6;Parent=Physo158807;constitutive=1;rank=6 scaffold_148 ensembl protein_coding_gene 61674 62288 . - . ID=Physo158808;biotype=protein_coding;external_name=C_scaffold_148000003;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 61674 62288 . - . ID=Physo158808;Parent=Physo158808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 61674 62288 . - 0 ID=Physo158808;Parent=Physo158808;rank=1 scaffold_148 . exon 61674 62288 . - . ID=Physo158808.1;Parent=Physo158808;constitutive=1;rank=1 scaffold_148 . biological_region 69980 69982 0.999 - . logic_name=eponine scaffold_148 . repeat_region 70734 70765 . ? . description=trf scaffold_148 . biological_region 71269 71273 0.999 + . logic_name=eponine scaffold_148 . repeat_region 72872 72896 . ? . description=trf scaffold_148 . biological_region 74660 74667 0.999 + . logic_name=eponine scaffold_148 . biological_region 74677 74685 0.999 + . logic_name=eponine scaffold_148 . biological_region 74740 74743 0.999 + . logic_name=eponine scaffold_148 . biological_region 75441 75450 0.999 + . logic_name=eponine scaffold_148 . repeat_region 75746 75760 . ? . description=dust scaffold_148 . biological_region 75755 75759 0.999 - . logic_name=eponine scaffold_148 . biological_region 75787 75791 0.999 - . logic_name=eponine scaffold_148 . biological_region 75857 75859 0.999 - . logic_name=eponine scaffold_148 . biological_region 76918 76921 0.999 - . logic_name=eponine scaffold_148 . biological_region 76976 76984 0.999 - . logic_name=eponine scaffold_148 . biological_region 76994 77001 0.999 - . logic_name=eponine scaffold_148 . biological_region 77656 77658 0.999 - . logic_name=eponine scaffold_148 . repeat_region 77659 77709 . ? . description=dust scaffold_148 . biological_region 77713 77714 0.999 - . logic_name=eponine scaffold_148 ensembl protein_coding_gene 77565 79396 . + . ID=Physo109579;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1480002;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 77565 79396 . + . ID=Physo109579;Parent=Physo109579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . exon 77565 77775 . + . ID=Physo109579.1;Parent=Physo109579;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_148 . CDS 77628 77775 . + 0 ID=Physo109579;Parent=Physo109579;rank=1 scaffold_148 . CDS 77847 79345 . + 0 ID=Physo109579;Parent=Physo109579;rank=2 scaffold_148 . exon 77847 79396 . + . ID=Physo109579.2;Parent=Physo109579;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_148 ensembl protein_coding_gene 70541 71410 . - . ID=Physo143694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480021;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 70541 71410 . - . ID=Physo143694;Parent=Physo143694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 70541 71410 . - 0 ID=Physo143694;Parent=Physo143694;rank=1 scaffold_148 . exon 70541 71410 . - . ID=Physo143694.1;Parent=Physo143694;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 72285 74074 . + . ID=Physo143695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480022;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 72285 74074 . + . ID=Physo143695;Parent=Physo143695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 72285 72440 . + 0 ID=Physo143695;Parent=Physo143695;rank=1 scaffold_148 . exon 72285 72440 . + . ID=Physo143695.1;Parent=Physo143695;constitutive=1;rank=1 scaffold_148 . CDS 72509 72905 . + 0 ID=Physo143695;Parent=Physo143695;rank=2 scaffold_148 . exon 72509 72905 . + . ID=Physo143695.2;Parent=Physo143695;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_148 . CDS 73080 74074 . + 0 ID=Physo143695;Parent=Physo143695;rank=3 scaffold_148 . exon 73080 74074 . + . ID=Physo143695.3;Parent=Physo143695;constitutive=1;ensembl_phase=1;rank=3 scaffold_148 ensembl protein_coding_gene 79629 81161 . - . ID=Physo109580;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1480003;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 79629 81161 . - . ID=Physo109580;Parent=Physo109580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 79629 81161 . - 0 ID=Physo109580;Parent=Physo109580;rank=1 scaffold_148 . exon 79629 81161 . - . ID=Physo109580.1;Parent=Physo109580;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 81604 81996 . + . ID=Physo124127;biotype=protein_coding;external_name=estExt_Genewise1.C_1480031;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 81604 81996 . + . ID=Physo124127;Parent=Physo124127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . exon 81604 81996 . + . ID=Physo124127.1;Parent=Physo124127;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_148 . CDS 81605 81937 . + 0 ID=Physo124127;Parent=Physo124127;rank=1 scaffold_148 ensembl protein_coding_gene 82210 84231 . - . ID=Physo143698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480025;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 82210 84231 . - . ID=Physo143698;Parent=Physo143698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 82210 84231 . - 0 ID=Physo143698;Parent=Physo143698;rank=1 scaffold_148 . exon 82210 84231 . - . ID=Physo143698.1;Parent=Physo143698;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 84442 85775 . + . ID=Physo143699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480026;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 84442 85775 . + . ID=Physo143699;Parent=Physo143699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 84442 84670 . + 0 ID=Physo143699;Parent=Physo143699;rank=1 scaffold_148 . exon 84442 84670 . + . ID=Physo143699.1;Parent=Physo143699;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_148 . CDS 84753 84823 . + 0 ID=Physo143699;Parent=Physo143699;rank=2 scaffold_148 . exon 84753 84823 . + . ID=Physo143699.2;Parent=Physo143699;constitutive=1;ensembl_phase=1;rank=2 scaffold_148 . CDS 84909 85775 . + 0 ID=Physo143699;Parent=Physo143699;rank=3 scaffold_148 . exon 84909 85775 . + . ID=Physo143699.3;Parent=Physo143699;constitutive=1;rank=3 scaffold_148 ensembl protein_coding_gene 86090 92106 . - . ID=Physo158810;biotype=protein_coding;external_name=C_scaffold_148000005;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 86090 92106 . - . ID=Physo158810;Parent=Physo158810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 86090 86097 . - 0 ID=Physo158810;Parent=Physo158810;rank=16 scaffold_148 . exon 86090 86097 . - . ID=Physo158810.16;Parent=Physo158810;constitutive=1;ensembl_phase=1;rank=16 scaffold_148 . CDS 86138 86258 . - 0 ID=Physo158810;Parent=Physo158810;rank=15 scaffold_148 . exon 86138 86258 . - . ID=Physo158810.15;Parent=Physo158810;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_148 . CDS 86338 86589 . - 0 ID=Physo158810;Parent=Physo158810;rank=14 scaffold_148 . exon 86338 86589 . - . ID=Physo158810.14;Parent=Physo158810;constitutive=1;rank=14 scaffold_148 . CDS 87036 87182 . - 0 ID=Physo158810;Parent=Physo158810;rank=13 scaffold_148 . exon 87036 87182 . - . ID=Physo158810.13;Parent=Physo158810;constitutive=1;rank=13 scaffold_148 . CDS 87924 88011 . - 0 ID=Physo158810;Parent=Physo158810;rank=12 scaffold_148 . exon 87924 88011 . - . ID=Physo158810.12;Parent=Physo158810;constitutive=1;ensembl_phase=2;rank=12 scaffold_148 . CDS 88207 88304 . - 0 ID=Physo158810;Parent=Physo158810;rank=11 scaffold_148 . CDS 88386 88700 . - 0 ID=Physo158810;Parent=Physo158810;rank=10 scaffold_148 . CDS 88758 89034 . - 0 ID=Physo158810;Parent=Physo158810;rank=9 scaffold_148 . CDS 89513 89827 . - 0 ID=Physo158810;Parent=Physo158810;rank=8 scaffold_148 . CDS 89879 90542 . - 0 ID=Physo158810;Parent=Physo158810;rank=7 scaffold_148 . CDS 90642 90973 . - 0 ID=Physo158810;Parent=Physo158810;rank=6 scaffold_148 . CDS 91208 91328 . - 0 ID=Physo158810;Parent=Physo158810;rank=5 scaffold_148 . CDS 91428 91586 . - 0 ID=Physo158810;Parent=Physo158810;rank=4 scaffold_148 . CDS 91670 91745 . - 0 ID=Physo158810;Parent=Physo158810;rank=3 scaffold_148 . CDS 91811 92043 . - 0 ID=Physo158810;Parent=Physo158810;rank=2 scaffold_148 . CDS 92097 92106 . - 0 ID=Physo158810;Parent=Physo158810;rank=1 scaffold_148 . biological_region 88561 88562 0.999 - . logic_name=eponine scaffold_148 . biological_region 88621 88624 0.999 + . logic_name=eponine scaffold_148 . biological_region 89834 89836 0.999 + . logic_name=eponine scaffold_148 . biological_region 89950 89954 0.999 - . logic_name=eponine scaffold_148 . biological_region 92300 92305 0.999 - . logic_name=eponine scaffold_148 . repeat_region 92507 92550 . ? . description=trf scaffold_148 ensembl protein_coding_gene 92463 94564 . + . ID=Physo143702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480029;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 92463 94564 . + . ID=Physo143702;Parent=Physo143702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 92463 94505 . + 0 ID=Physo143702;Parent=Physo143702;rank=1 scaffold_148 . exon 92463 94505 . + . ID=Physo143702.1;Parent=Physo143702;constitutive=1;rank=1 scaffold_148 . CDS 94556 94564 . + 0 ID=Physo143702;Parent=Physo143702;rank=2 scaffold_148 . exon 94556 94564 . + . ID=Physo143702.2;Parent=Physo143702;constitutive=1;rank=2 scaffold_148 ensembl protein_coding_gene 96157 97097 . - . ID=Physo143703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480030;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 96157 97097 . - . ID=Physo143703;Parent=Physo143703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 96157 96200 . - 0 ID=Physo143703;Parent=Physo143703;rank=4 scaffold_148 . exon 96157 96200 . - . ID=Physo143703.4;Parent=Physo143703;constitutive=1;ensembl_phase=1;rank=4 scaffold_148 . CDS 96281 96550 . - 0 ID=Physo143703;Parent=Physo143703;rank=3 scaffold_148 . exon 96281 96550 . - . ID=Physo143703.3;Parent=Physo143703;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_148 . CDS 96796 96931 . - 0 ID=Physo143703;Parent=Physo143703;rank=2 scaffold_148 . exon 96796 96931 . - . ID=Physo143703.2;Parent=Physo143703;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_148 . CDS 97023 97097 . - 0 ID=Physo143703;Parent=Physo143703;rank=1 scaffold_148 . exon 97023 97097 . - . ID=Physo143703.1;Parent=Physo143703;constitutive=1;rank=1 scaffold_148 . exon 88207 88304 . - . ID=Physo158810.11;Parent=Physo158810;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_148 . exon 88386 88700 . - . ID=Physo158810.10;Parent=Physo158810;constitutive=1;rank=10 scaffold_148 . exon 88758 89034 . - . ID=Physo158810.9;Parent=Physo158810;constitutive=1;ensembl_phase=2;rank=9 scaffold_148 . exon 89513 89827 . - . ID=Physo158810.8;Parent=Physo158810;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_148 . exon 89879 90542 . - . ID=Physo158810.7;Parent=Physo158810;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_148 . exon 90642 90973 . - . ID=Physo158810.6;Parent=Physo158810;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_148 . exon 91208 91328 . - . ID=Physo158810.5;Parent=Physo158810;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_148 . exon 91428 91586 . - . ID=Physo158810.4;Parent=Physo158810;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_148 . exon 91670 91745 . - . ID=Physo158810.3;Parent=Physo158810;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_148 . exon 91811 92043 . - . ID=Physo158810.2;Parent=Physo158810;constitutive=1;ensembl_phase=1;rank=2 scaffold_148 . exon 92097 92106 . - . ID=Physo158810.1;Parent=Physo158810;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_148 . repeat_region 103036 103049 . ? . description=dust scaffold_148 . repeat_region 106910 106917 . ? . description=dust scaffold_148 . biological_region 114906 114911 0.999 + . logic_name=eponine scaffold_148 ensembl protein_coding_gene 108668 109949 . + . ID=Physo143704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480031;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 108668 109949 . + . ID=Physo143704;Parent=Physo143704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 108668 108913 . + 0 ID=Physo143704;Parent=Physo143704;rank=1 scaffold_148 . exon 108668 108913 . + . ID=Physo143704.1;Parent=Physo143704;constitutive=1;rank=1 scaffold_148 . CDS 108999 109244 . + 0 ID=Physo143704;Parent=Physo143704;rank=2 scaffold_148 . exon 108999 109244 . + . ID=Physo143704.2;Parent=Physo143704;constitutive=1;rank=2 scaffold_148 . CDS 109353 109949 . + 0 ID=Physo143704;Parent=Physo143704;rank=3 scaffold_148 . exon 109353 109949 . + . ID=Physo143704.3;Parent=Physo143704;constitutive=1;rank=3 scaffold_148 ensembl protein_coding_gene 114482 115443 . - . ID=Physo143705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480032;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 114482 115443 . - . ID=Physo143705;Parent=Physo143705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 114482 114756 . - 0 ID=Physo143705;Parent=Physo143705;rank=4 scaffold_148 . exon 114482 114756 . - . ID=Physo143705.4;Parent=Physo143705;constitutive=1;ensembl_phase=1;rank=4 scaffold_148 . CDS 114824 115074 . - 0 ID=Physo143705;Parent=Physo143705;rank=3 scaffold_148 . exon 114824 115074 . - . ID=Physo143705.3;Parent=Physo143705;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_148 . CDS 115147 115174 . - 0 ID=Physo143705;Parent=Physo143705;rank=2 scaffold_148 . exon 115147 115174 . - . ID=Physo143705.2;Parent=Physo143705;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_148 . CDS 115257 115443 . - 0 ID=Physo143705;Parent=Physo143705;rank=1 scaffold_148 . exon 115257 115443 . - . ID=Physo143705.1;Parent=Physo143705;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_148 . repeat_region 118986 119036 . ? . description=trf scaffold_148 . repeat_region 121766 121773 . ? . description=dust scaffold_148 . repeat_region 122389 122441 . ? . description=dust scaffold_148 ensembl tRNA_gene 126645 126716 . + . ID=EPrPSOG00000000031;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_148 ensembl transcript 126645 126716 . + . ID=EPrPSOT00000000031;Parent=EPrPSOG00000000031;biotype=tRNA;logic_name=ncrna_eg scaffold_148 ensembl tRNA_gene 126825 126896 . + . ID=EPrPSOG00000000280;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_148 ensembl transcript 126825 126896 . + . ID=EPrPSOT00000000280;Parent=EPrPSOG00000000280;biotype=tRNA;logic_name=ncrna_eg scaffold_148 . exon 126645 126716 . + . ID=EPrPSOE00000000031;Parent=EPrPSOT00000000031;constitutive=1;rank=1 scaffold_148 . exon 126825 126896 . + . ID=EPrPSOE00000000280;Parent=EPrPSOT00000000280;constitutive=1;rank=1 scaffold_148 ensembl protein_coding_gene 121872 123102 . + . ID=Physo143706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1480033;logic_name=jgi_physo1_1 scaffold_148 ensembl transcript 121872 123102 . + . ID=Physo143706;Parent=Physo143706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_148 . CDS 121872 122095 . + 0 ID=Physo143706;Parent=Physo143706;rank=1 scaffold_148 . exon 121872 122095 . + . ID=Physo143706.1;Parent=Physo143706;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_148 . CDS 122446 122455 . + 0 ID=Physo143706;Parent=Physo143706;rank=2 scaffold_148 . exon 122446 122455 . + . ID=Physo143706.2;Parent=Physo143706;constitutive=1;ensembl_phase=2;rank=2 scaffold_148 . CDS 122479 122581 . + 0 ID=Physo143706;Parent=Physo143706;rank=3 scaffold_148 . exon 122479 122581 . + . ID=Physo143706.3;Parent=Physo143706;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_148 . CDS 122707 122822 . + 0 ID=Physo143706;Parent=Physo143706;rank=4 scaffold_148 . exon 122707 122822 . + . ID=Physo143706.4;Parent=Physo143706;constitutive=1;ensembl_phase=1;rank=4 scaffold_148 . CDS 122989 123102 . + 0 ID=Physo143706;Parent=Physo143706;rank=5 scaffold_148 . exon 122989 123102 . + . ID=Physo143706.5;Parent=Physo143706;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_146 1 128559 scaffold_146 . repeat_region 1 384 . ? . description=dust scaffold_146 . repeat_region 1 402 . ? . description=trf scaffold_146 . repeat_region 48 252 . + . description=(CCCTAA)n scaffold_146 . repeat_region 1033 2115 . ? . description=dust scaffold_146 . repeat_region 3564 3662 . ? . description=trf scaffold_146 . repeat_region 3564 3689 . ? . description=dust scaffold_146 . repeat_region 3564 3690 . + . description=(TC)n scaffold_146 . repeat_region 4258 4265 . ? . description=dust scaffold_146 . repeat_region 4599 4647 . ? . description=trf scaffold_146 ensembl protein_coding_gene 5169 8610 . - . ID=Physo143630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460001;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 5169 8610 . - . ID=Physo143630;Parent=Physo143630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 5169 5249 . - 0 ID=Physo143630;Parent=Physo143630;rank=6 scaffold_146 . exon 5169 5249 . - . ID=Physo143630.6;Parent=Physo143630;constitutive=1;rank=6 scaffold_146 . CDS 5296 5805 . - 0 ID=Physo143630;Parent=Physo143630;rank=5 scaffold_146 . exon 5296 5805 . - . ID=Physo143630.5;Parent=Physo143630;constitutive=1;rank=5 scaffold_146 . CDS 5917 6005 . - 0 ID=Physo143630;Parent=Physo143630;rank=4 scaffold_146 . exon 5917 6005 . - . ID=Physo143630.4;Parent=Physo143630;constitutive=1;ensembl_phase=1;rank=4 scaffold_146 . CDS 6078 7982 . - 0 ID=Physo143630;Parent=Physo143630;rank=3 scaffold_146 . exon 6078 7982 . - . ID=Physo143630.3;Parent=Physo143630;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_146 . CDS 8075 8405 . - 0 ID=Physo143630;Parent=Physo143630;rank=2 scaffold_146 . exon 8075 8405 . - . ID=Physo143630.2;Parent=Physo143630;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_146 . CDS 8539 8610 . - 0 ID=Physo143630;Parent=Physo143630;rank=1 scaffold_146 . exon 8539 8610 . - . ID=Physo143630.1;Parent=Physo143630;constitutive=1;rank=1 scaffold_146 . biological_region 17546 17548 0.999 + . logic_name=eponine scaffold_146 ensembl protein_coding_gene 20598 20780 . - . ID=Physo124036;biotype=protein_coding;external_name=estExt_Genewise1.C_1460002;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 20598 20780 . - . ID=Physo124036;Parent=Physo124036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 20598 20741 . - 0 ID=Physo124036;Parent=Physo124036;rank=1 scaffold_146 . exon 20598 20780 . - . ID=Physo124036.1;Parent=Physo124036;constitutive=1;ensembl_phase=-1;rank=1 scaffold_146 ensembl protein_coding_gene 25799 26355 . - . ID=Physo124043;biotype=protein_coding;external_name=estExt_Genewise1.C_1460009;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 25799 26355 . - . ID=Physo124043;Parent=Physo124043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . exon 25799 26355 . - . ID=Physo124043.1;Parent=Physo124043;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_146 . CDS 25801 26076 . - 0 ID=Physo124043;Parent=Physo124043;rank=1 scaffold_146 ensembl protein_coding_gene 23449 24347 . - . ID=Physo143631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460002;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 23449 24347 . - . ID=Physo143631;Parent=Physo143631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 23449 23661 . - 0 ID=Physo143631;Parent=Physo143631;rank=2 scaffold_146 . exon 23449 23661 . - . ID=Physo143631.2;Parent=Physo143631;constitutive=1;rank=2 scaffold_146 . CDS 24048 24347 . - 0 ID=Physo143631;Parent=Physo143631;rank=1 scaffold_146 . exon 24048 24347 . - . ID=Physo143631.1;Parent=Physo143631;constitutive=1;rank=1 scaffold_146 ensembl protein_coding_gene 28043 29463 . - . ID=Physo143632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460003;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 28043 29463 . - . ID=Physo143632;Parent=Physo143632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 28043 28060 . - 0 ID=Physo143632;Parent=Physo143632;rank=2 scaffold_146 . exon 28043 28060 . - . ID=Physo143632.2;Parent=Physo143632;constitutive=1;rank=2 scaffold_146 . CDS 28135 29463 . - 0 ID=Physo143632;Parent=Physo143632;rank=1 scaffold_146 . exon 28135 29463 . - . ID=Physo143632.1;Parent=Physo143632;constitutive=1;rank=1 scaffold_146 . repeat_region 29707 29756 . ? . description=dust scaffold_146 . repeat_region 38390 38401 . ? . description=dust scaffold_146 ensembl protein_coding_gene 31136 31692 . - . ID=Physo124048;biotype=protein_coding;external_name=estExt_Genewise1.C_1460014;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 31136 31692 . - . ID=Physo124048;Parent=Physo124048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . exon 31136 31692 . - . ID=Physo124048.1;Parent=Physo124048;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_146 . CDS 31138 31413 . - 0 ID=Physo124048;Parent=Physo124048;rank=1 scaffold_146 ensembl protein_coding_gene 33380 34800 . - . ID=Physo143633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460004;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 33380 34800 . - . ID=Physo143633;Parent=Physo143633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 33380 33397 . - 0 ID=Physo143633;Parent=Physo143633;rank=2 scaffold_146 . exon 33380 33397 . - . ID=Physo143633.2;Parent=Physo143633;constitutive=1;rank=2 scaffold_146 . CDS 33472 34800 . - 0 ID=Physo143633;Parent=Physo143633;rank=1 scaffold_146 . exon 33472 34800 . - . ID=Physo143633.1;Parent=Physo143633;constitutive=1;rank=1 scaffold_146 . repeat_region 40447 40526 . + . description=(CTA)n scaffold_146 . biological_region 41114 41117 0.999 + . logic_name=eponine scaffold_146 . biological_region 43301 43307 0.999 - . logic_name=eponine scaffold_146 . biological_region 43698 43703 0.999 + . logic_name=eponine scaffold_146 . biological_region 45199 45201 0.999 + . logic_name=eponine scaffold_146 . repeat_region 47370 47407 . ? . description=trf scaffold_146 . biological_region 48069 48071 0.999 + . logic_name=eponine scaffold_146 ensembl protein_coding_gene 48998 50326 . - . ID=Physo109574;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1460001;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 48998 50326 . - . ID=Physo109574;Parent=Physo109574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 48998 49082 . - 0 ID=Physo109574;Parent=Physo109574;rank=4 scaffold_146 . exon 48998 49082 . - . ID=Physo109574.4;Parent=Physo109574;constitutive=1;ensembl_phase=2;rank=4 scaffold_146 . CDS 49163 49285 . - 0 ID=Physo109574;Parent=Physo109574;rank=3 scaffold_146 . exon 49163 49285 . - . ID=Physo109574.3;Parent=Physo109574;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_146 . CDS 49363 49941 . - 0 ID=Physo109574;Parent=Physo109574;rank=2 scaffold_146 . exon 49363 49941 . - . ID=Physo109574.2;Parent=Physo109574;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_146 . CDS 50043 50326 . - 0 ID=Physo109574;Parent=Physo109574;rank=1 scaffold_146 ensembl protein_coding_gene 40332 42237 . + . ID=Physo143634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460005;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 40332 42237 . + . ID=Physo143634;Parent=Physo143634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 40332 40421 . + 0 ID=Physo143634;Parent=Physo143634;rank=1 scaffold_146 . exon 40332 40421 . + . ID=Physo143634.1;Parent=Physo143634;constitutive=1;rank=1 scaffold_146 . CDS 40494 40739 . + 0 ID=Physo143634;Parent=Physo143634;rank=2 scaffold_146 . exon 40494 40739 . + . ID=Physo143634.2;Parent=Physo143634;constitutive=1;rank=2 scaffold_146 . CDS 40808 40892 . + 0 ID=Physo143634;Parent=Physo143634;rank=3 scaffold_146 . exon 40808 40892 . + . ID=Physo143634.3;Parent=Physo143634;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_146 . CDS 40973 41042 . + 0 ID=Physo143634;Parent=Physo143634;rank=4 scaffold_146 . exon 40973 41042 . + . ID=Physo143634.4;Parent=Physo143634;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_146 . CDS 41109 41624 . + 0 ID=Physo143634;Parent=Physo143634;rank=5 scaffold_146 . exon 41109 41624 . + . ID=Physo143634.5;Parent=Physo143634;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_146 . CDS 41703 42237 . + 0 ID=Physo143634;Parent=Physo143634;rank=6 scaffold_146 . exon 41703 42237 . + . ID=Physo143634.6;Parent=Physo143634;constitutive=1;ensembl_phase=2;rank=6 scaffold_146 ensembl protein_coding_gene 42684 44052 . - . ID=Physo143635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460006;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 42684 44052 . - . ID=Physo143635;Parent=Physo143635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 42684 42963 . - 0 ID=Physo143635;Parent=Physo143635;rank=3 scaffold_146 . exon 42684 42963 . - . ID=Physo143635.3;Parent=Physo143635;constitutive=1;ensembl_phase=2;rank=3 scaffold_146 . CDS 43027 43331 . - 0 ID=Physo143635;Parent=Physo143635;rank=2 scaffold_146 . exon 43027 43331 . - . ID=Physo143635.2;Parent=Physo143635;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_146 . CDS 43408 44052 . - 0 ID=Physo143635;Parent=Physo143635;rank=1 scaffold_146 . exon 43408 44052 . - . ID=Physo143635.1;Parent=Physo143635;constitutive=1;rank=1 scaffold_146 ensembl protein_coding_gene 45333 46624 . - . ID=Physo143636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460007;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 45333 46624 . - . ID=Physo143636;Parent=Physo143636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 45333 45488 . - 0 ID=Physo143636;Parent=Physo143636;rank=2 scaffold_146 . exon 45333 45488 . - . ID=Physo143636.2;Parent=Physo143636;constitutive=1;rank=2 scaffold_146 . CDS 45563 46624 . - 0 ID=Physo143636;Parent=Physo143636;rank=1 scaffold_146 . exon 45563 46624 . - . ID=Physo143636.1;Parent=Physo143636;constitutive=1;rank=1 scaffold_146 ensembl protein_coding_gene 47360 48892 . + . ID=Physo143637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460008;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 47360 48892 . + . ID=Physo143637;Parent=Physo143637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 47360 47435 . + 0 ID=Physo143637;Parent=Physo143637;rank=1 scaffold_146 . exon 47360 47435 . + . ID=Physo143637.1;Parent=Physo143637;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_146 . CDS 47503 47606 . + 0 ID=Physo143637;Parent=Physo143637;rank=2 scaffold_146 . exon 47503 47606 . + . ID=Physo143637.2;Parent=Physo143637;constitutive=1;ensembl_phase=1;rank=2 scaffold_146 . CDS 47672 48892 . + 0 ID=Physo143637;Parent=Physo143637;rank=3 scaffold_146 . exon 47672 48892 . + . ID=Physo143637.3;Parent=Physo143637;constitutive=1;rank=3 scaffold_146 . exon 50043 50326 . - . ID=Physo109574.1;Parent=Physo109574;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_146 ensembl protein_coding_gene 54561 57704 . + . ID=Physo143639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460010;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 54561 57704 . + . ID=Physo143639;Parent=Physo143639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 54561 54776 . + 0 ID=Physo143639;Parent=Physo143639;rank=1 scaffold_146 . exon 54561 54776 . + . ID=Physo143639.1;Parent=Physo143639;constitutive=1;rank=1 scaffold_146 . CDS 54855 54960 . + 0 ID=Physo143639;Parent=Physo143639;rank=2 scaffold_146 . exon 54855 54960 . + . ID=Physo143639.2;Parent=Physo143639;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_146 . CDS 55029 55951 . + 0 ID=Physo143639;Parent=Physo143639;rank=3 scaffold_146 . exon 55029 55951 . + . ID=Physo143639.3;Parent=Physo143639;constitutive=1;ensembl_phase=1;rank=3 scaffold_146 . CDS 56027 57611 . + 0 ID=Physo143639;Parent=Physo143639;rank=4 scaffold_146 . exon 56027 57611 . + . ID=Physo143639.4;Parent=Physo143639;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_146 . CDS 57655 57704 . + 0 ID=Physo143639;Parent=Physo143639;rank=5 scaffold_146 . exon 57655 57704 . + . ID=Physo143639.5;Parent=Physo143639;constitutive=1;ensembl_phase=1;rank=5 scaffold_146 ensembl protein_coding_gene 58421 62992 . - . ID=Physo158799;biotype=protein_coding;external_name=C_scaffold_146000005;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 58421 62992 . - . ID=Physo158799;Parent=Physo158799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 58421 58779 . - 0 ID=Physo158799;Parent=Physo158799;rank=13 scaffold_146 . exon 58421 58779 . - . ID=Physo158799.13;Parent=Physo158799;constitutive=1;ensembl_phase=1;rank=13 scaffold_146 . CDS 58801 58993 . - 0 ID=Physo158799;Parent=Physo158799;rank=12 scaffold_146 . exon 58801 58993 . - . ID=Physo158799.12;Parent=Physo158799;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_146 . CDS 59027 60139 . - 0 ID=Physo158799;Parent=Physo158799;rank=11 scaffold_146 . exon 59027 60139 . - . ID=Physo158799.11;Parent=Physo158799;constitutive=1;rank=11 scaffold_146 . CDS 60201 60284 . - 0 ID=Physo158799;Parent=Physo158799;rank=10 scaffold_146 . CDS 60362 60595 . - 0 ID=Physo158799;Parent=Physo158799;rank=9 scaffold_146 . CDS 61117 61399 . - 0 ID=Physo158799;Parent=Physo158799;rank=8 scaffold_146 . CDS 61468 61610 . - 0 ID=Physo158799;Parent=Physo158799;rank=7 scaffold_146 . CDS 61676 61746 . - 0 ID=Physo158799;Parent=Physo158799;rank=6 scaffold_146 . CDS 61823 61916 . - 0 ID=Physo158799;Parent=Physo158799;rank=5 scaffold_146 . CDS 62000 62555 . - 0 ID=Physo158799;Parent=Physo158799;rank=4 scaffold_146 . CDS 62648 62678 . - 0 ID=Physo158799;Parent=Physo158799;rank=3 scaffold_146 . CDS 62785 62868 . - 0 ID=Physo158799;Parent=Physo158799;rank=2 scaffold_146 . CDS 62977 62992 . - 0 ID=Physo158799;Parent=Physo158799;rank=1 scaffold_146 . biological_region 62271 62276 0.999 + . logic_name=eponine scaffold_146 . biological_region 62334 62334 0.999 + . logic_name=eponine scaffold_146 . repeat_region 62341 62381 . ? . description=trf scaffold_146 . biological_region 62442 62447 0.999 - . logic_name=eponine scaffold_146 . biological_region 62488 62490 0.999 - . logic_name=eponine scaffold_146 . biological_region 62732 62735 0.999 + . logic_name=eponine scaffold_146 . biological_region 63495 63496 0.999 - . logic_name=eponine scaffold_146 . biological_region 63752 63758 0.999 + . logic_name=eponine scaffold_146 . biological_region 63828 63832 0.999 - . logic_name=eponine scaffold_146 . repeat_region 66046 66055 . ? . description=dust scaffold_146 . biological_region 66114 66114 0.999 + . logic_name=eponine scaffold_146 . biological_region 66493 66496 0.999 - . logic_name=eponine scaffold_146 . biological_region 66514 66518 0.999 + . logic_name=eponine scaffold_146 . biological_region 66528 66534 0.999 - . logic_name=eponine scaffold_146 . biological_region 68002 68002 0.999 - . logic_name=eponine scaffold_146 . biological_region 68027 68028 0.999 - . logic_name=eponine scaffold_146 . biological_region 68570 68570 0.999 - . logic_name=eponine scaffold_146 ensembl protein_coding_gene 63521 64430 . - . ID=Physo143642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460013;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 63521 64430 . - . ID=Physo143642;Parent=Physo143642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 63521 64183 . - 0 ID=Physo143642;Parent=Physo143642;rank=3 scaffold_146 . exon 63521 64183 . - . ID=Physo143642.3;Parent=Physo143642;constitutive=1;rank=3 scaffold_146 . CDS 64249 64331 . - 0 ID=Physo143642;Parent=Physo143642;rank=2 scaffold_146 . exon 64249 64331 . - . ID=Physo143642.2;Parent=Physo143642;constitutive=1;ensembl_phase=1;rank=2 scaffold_146 . CDS 64409 64430 . - 0 ID=Physo143642;Parent=Physo143642;rank=1 scaffold_146 . exon 64409 64430 . - . ID=Physo143642.1;Parent=Physo143642;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_146 ensembl protein_coding_gene 66421 68136 . + . ID=Physo143644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460015;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 66421 68136 . + . ID=Physo143644;Parent=Physo143644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 66421 66609 . + 0 ID=Physo143644;Parent=Physo143644;rank=1 scaffold_146 . exon 66421 66609 . + . ID=Physo143644.1;Parent=Physo143644;constitutive=1;rank=1 scaffold_146 . CDS 66713 66865 . + 0 ID=Physo143644;Parent=Physo143644;rank=2 scaffold_146 . exon 66713 66865 . + . ID=Physo143644.2;Parent=Physo143644;constitutive=1;rank=2 scaffold_146 . CDS 66938 67358 . + 0 ID=Physo143644;Parent=Physo143644;rank=3 scaffold_146 . exon 66938 67358 . + . ID=Physo143644.3;Parent=Physo143644;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_146 . CDS 67480 67714 . + 0 ID=Physo143644;Parent=Physo143644;rank=4 scaffold_146 . exon 67480 67714 . + . ID=Physo143644.4;Parent=Physo143644;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_146 . CDS 67797 68136 . + 0 ID=Physo143644;Parent=Physo143644;rank=5 scaffold_146 . exon 67797 68136 . + . ID=Physo143644.5;Parent=Physo143644;constitutive=1;ensembl_phase=2;rank=5 scaffold_146 . exon 60201 60284 . - . ID=Physo158799.10;Parent=Physo158799;constitutive=1;rank=10 scaffold_146 . exon 60362 60595 . - . ID=Physo158799.9;Parent=Physo158799;constitutive=1;rank=9 scaffold_146 . exon 61117 61399 . - . ID=Physo158799.8;Parent=Physo158799;constitutive=1;ensembl_phase=2;rank=8 scaffold_146 . exon 61468 61610 . - . ID=Physo158799.7;Parent=Physo158799;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_146 . exon 61676 61746 . - . ID=Physo158799.6;Parent=Physo158799;constitutive=1;ensembl_phase=1;rank=6 scaffold_146 . exon 61823 61916 . - . ID=Physo158799.5;Parent=Physo158799;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_146 . exon 62000 62555 . - . ID=Physo158799.4;Parent=Physo158799;constitutive=1;ensembl_phase=2;rank=4 scaffold_146 . exon 62648 62678 . - . ID=Physo158799.3;Parent=Physo158799;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_146 . exon 62785 62868 . - . ID=Physo158799.2;Parent=Physo158799;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_146 . exon 62977 62992 . - . ID=Physo158799.1;Parent=Physo158799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_146 ensembl protein_coding_gene 64803 66211 . - . ID=Physo158803;biotype=protein_coding;external_name=C_scaffold_146000009;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 64803 66211 . - . ID=Physo158803;Parent=Physo158803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 64803 64995 . - 0 ID=Physo158803;Parent=Physo158803;rank=5 scaffold_146 . exon 64803 64995 . - . ID=Physo158803.5;Parent=Physo158803;constitutive=1;ensembl_phase=2;rank=5 scaffold_146 . CDS 65073 65464 . - 0 ID=Physo158803;Parent=Physo158803;rank=4 scaffold_146 . exon 65073 65464 . - . ID=Physo158803.4;Parent=Physo158803;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_146 . CDS 65562 65692 . - 0 ID=Physo158803;Parent=Physo158803;rank=3 scaffold_146 . exon 65562 65692 . - . ID=Physo158803.3;Parent=Physo158803;constitutive=1;ensembl_phase=1;rank=3 scaffold_146 . CDS 65776 66002 . - 0 ID=Physo158803;Parent=Physo158803;rank=2 scaffold_146 . exon 65776 66002 . - . ID=Physo158803.2;Parent=Physo158803;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_146 . CDS 66081 66211 . - 0 ID=Physo158803;Parent=Physo158803;rank=1 scaffold_146 . exon 66081 66211 . - . ID=Physo158803.1;Parent=Physo158803;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_146 ensembl protein_coding_gene 69324 73556 . + . ID=Physo143645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460016;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 69324 73556 . + . ID=Physo143645;Parent=Physo143645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 69324 73556 . + 0 ID=Physo143645;Parent=Physo143645;rank=1 scaffold_146 . exon 69324 73556 . + . ID=Physo143645.1;Parent=Physo143645;constitutive=1;rank=1 scaffold_146 ensembl protein_coding_gene 74421 75575 . + . ID=Physo143646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460017;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 74421 75575 . + . ID=Physo143646;Parent=Physo143646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . exon 74421 74801 . + . ID=Physo143646.1;Parent=Physo143646;constitutive=1;ensembl_phase=-1;rank=1 scaffold_146 . CDS 74532 74801 . + 0 ID=Physo143646;Parent=Physo143646;rank=1 scaffold_146 . CDS 74895 75575 . + 0 ID=Physo143646;Parent=Physo143646;rank=2 scaffold_146 . exon 74895 75575 . + . ID=Physo143646.2;Parent=Physo143646;constitutive=1;rank=2 scaffold_146 ensembl protein_coding_gene 76006 79912 . - . ID=Physo158805;biotype=protein_coding;external_name=C_scaffold_146000011;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 76006 79912 . - . ID=Physo158805;Parent=Physo158805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 76006 76383 . - 0 ID=Physo158805;Parent=Physo158805;rank=6 scaffold_146 . exon 76006 76383 . - . ID=Physo158805.6;Parent=Physo158805;constitutive=1;rank=6 scaffold_146 . CDS 76443 76786 . - 0 ID=Physo158805;Parent=Physo158805;rank=5 scaffold_146 . exon 76443 76786 . - . ID=Physo158805.5;Parent=Physo158805;constitutive=1;ensembl_phase=1;rank=5 scaffold_146 . CDS 76818 77843 . - 0 ID=Physo158805;Parent=Physo158805;rank=4 scaffold_146 . exon 76818 77843 . - . ID=Physo158805.4;Parent=Physo158805;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_146 . CDS 78220 78672 . - 0 ID=Physo158805;Parent=Physo158805;rank=3 scaffold_146 . exon 78220 78672 . - . ID=Physo158805.3;Parent=Physo158805;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_146 . CDS 78703 79206 . - 0 ID=Physo158805;Parent=Physo158805;rank=2 scaffold_146 . exon 78703 79206 . - . ID=Physo158805.2;Parent=Physo158805;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_146 . CDS 79273 79912 . - 0 ID=Physo158805;Parent=Physo158805;rank=1 scaffold_146 . biological_region 79363 79364 0.999 + . logic_name=eponine scaffold_146 . biological_region 79748 79749 0.999 + . logic_name=eponine scaffold_146 . biological_region 79757 79760 0.999 - . logic_name=eponine scaffold_146 . biological_region 79884 79891 0.999 - . logic_name=eponine scaffold_146 . repeat_region 82693 82798 . ? . description=trf scaffold_146 . repeat_region 83561 83607 . ? . description=trf scaffold_146 . biological_region 83730 83732 0.999 - . logic_name=eponine scaffold_146 . biological_region 84765 84767 0.999 - . logic_name=eponine scaffold_146 . repeat_region 85751 91780 . - . description=GypsyPi-1c_I-int scaffold_146 . biological_region 86335 86340 0.999 - . logic_name=eponine scaffold_146 . biological_region 87069 87075 0.999 + . logic_name=eponine scaffold_146 . biological_region 88007 88011 0.999 + . logic_name=eponine scaffold_146 ensembl protein_coding_gene 81056 82379 . + . ID=Physo143648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460019;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 81056 82379 . + . ID=Physo143648;Parent=Physo143648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 81056 81225 . + 0 ID=Physo143648;Parent=Physo143648;rank=1 scaffold_146 . exon 81056 81225 . + . ID=Physo143648.1;Parent=Physo143648;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_146 . CDS 81402 81729 . + 0 ID=Physo143648;Parent=Physo143648;rank=2 scaffold_146 . exon 81402 81729 . + . ID=Physo143648.2;Parent=Physo143648;constitutive=1;ensembl_phase=2;rank=2 scaffold_146 . CDS 81810 82379 . + 0 ID=Physo143648;Parent=Physo143648;rank=3 scaffold_146 . exon 81810 82379 . + . ID=Physo143648.3;Parent=Physo143648;constitutive=1;rank=3 scaffold_146 ensembl protein_coding_gene 82632 91693 . - . ID=Physo143649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460020;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 82632 91693 . - . ID=Physo143649;Parent=Physo143649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 82632 83875 . - 0 ID=Physo143649;Parent=Physo143649;rank=18 scaffold_146 . exon 82632 83875 . - . ID=Physo143649.18;Parent=Physo143649;constitutive=1;ensembl_phase=1;rank=18 scaffold_146 . CDS 83989 84036 . - 0 ID=Physo143649;Parent=Physo143649;rank=17 scaffold_146 . exon 83989 84036 . - . ID=Physo143649.17;Parent=Physo143649;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=17 scaffold_146 . CDS 84076 84154 . - 0 ID=Physo143649;Parent=Physo143649;rank=16 scaffold_146 . exon 84076 84154 . - . ID=Physo143649.16;Parent=Physo143649;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_146 . CDS 84477 84884 . - 0 ID=Physo143649;Parent=Physo143649;rank=15 scaffold_146 . exon 84477 84884 . - . ID=Physo143649.15;Parent=Physo143649;constitutive=1;rank=15 scaffold_146 . CDS 85327 85465 . - 0 ID=Physo143649;Parent=Physo143649;rank=14 scaffold_146 . exon 85327 85465 . - . ID=Physo143649.14;Parent=Physo143649;constitutive=1;ensembl_phase=2;rank=14 scaffold_146 . CDS 85486 85705 . - 0 ID=Physo143649;Parent=Physo143649;rank=13 scaffold_146 . exon 85486 85705 . - . ID=Physo143649.13;Parent=Physo143649;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_146 . CDS 85749 85977 . - 0 ID=Physo143649;Parent=Physo143649;rank=12 scaffold_146 . exon 85749 85977 . - . ID=Physo143649.12;Parent=Physo143649;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_146 . CDS 86046 86146 . - 0 ID=Physo143649;Parent=Physo143649;rank=11 scaffold_146 . exon 86046 86146 . - . ID=Physo143649.11;Parent=Physo143649;constitutive=1;ensembl_phase=1;rank=11 scaffold_146 . CDS 86208 86626 . - 0 ID=Physo143649;Parent=Physo143649;rank=10 scaffold_146 . exon 86208 86626 . - . ID=Physo143649.10;Parent=Physo143649;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_146 . CDS 86997 87157 . - 0 ID=Physo143649;Parent=Physo143649;rank=9 scaffold_146 . exon 86997 87157 . - . ID=Physo143649.9;Parent=Physo143649;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_146 . CDS 87257 87402 . - 0 ID=Physo143649;Parent=Physo143649;rank=8 scaffold_146 . exon 87257 87402 . - . ID=Physo143649.8;Parent=Physo143649;constitutive=1;ensembl_phase=1;rank=8 scaffold_146 . CDS 87446 87771 . - 0 ID=Physo143649;Parent=Physo143649;rank=7 scaffold_146 . exon 87446 87771 . - . ID=Physo143649.7;Parent=Physo143649;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_146 . CDS 87801 88141 . - 0 ID=Physo143649;Parent=Physo143649;rank=6 scaffold_146 . exon 87801 88141 . - . ID=Physo143649.6;Parent=Physo143649;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_146 . CDS 88439 89062 . - 0 ID=Physo143649;Parent=Physo143649;rank=5 scaffold_146 . exon 88439 89062 . - . ID=Physo143649.5;Parent=Physo143649;constitutive=1;rank=5 scaffold_146 . CDS 89284 89868 . - 0 ID=Physo143649;Parent=Physo143649;rank=4 scaffold_146 . CDS 90024 90156 . - 0 ID=Physo143649;Parent=Physo143649;rank=3 scaffold_146 . CDS 90259 90519 . - 0 ID=Physo143649;Parent=Physo143649;rank=2 scaffold_146 . CDS 90693 91693 . - 0 ID=Physo143649;Parent=Physo143649;rank=1 scaffold_146 . exon 79273 79912 . - . ID=Physo158805.1;Parent=Physo158805;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_146 . repeat_region 91781 91996 . - . description=GypsyPi-1c_LTR scaffold_146 . exon 89284 89868 . - . ID=Physo143649.4;Parent=Physo143649;constitutive=1;rank=4 scaffold_146 . exon 90024 90156 . - . ID=Physo143649.3;Parent=Physo143649;constitutive=1;ensembl_phase=2;rank=3 scaffold_146 . exon 90259 90519 . - . ID=Physo143649.2;Parent=Physo143649;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_146 . exon 90693 91693 . - . ID=Physo143649.1;Parent=Physo143649;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_146 ensembl protein_coding_gene 93120 94322 . + . ID=Physo143650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460021;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 93120 94322 . + . ID=Physo143650;Parent=Physo143650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 93120 94322 . + 0 ID=Physo143650;Parent=Physo143650;rank=1 scaffold_146 . exon 93120 94322 . + . ID=Physo143650.1;Parent=Physo143650;constitutive=1;rank=1 scaffold_146 ensembl protein_coding_gene 94499 100609 . - . ID=Physo143651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460022;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 94499 100609 . - . ID=Physo143651;Parent=Physo143651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . exon 94499 96856 . - . ID=Physo143651.3;Parent=Physo143651;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_146 . CDS 94653 96856 . - 0 ID=Physo143651;Parent=Physo143651;rank=3 scaffold_146 . CDS 97130 100016 . - 0 ID=Physo143651;Parent=Physo143651;rank=2 scaffold_146 . exon 97130 100016 . - . ID=Physo143651.2;Parent=Physo143651;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_146 . CDS 100127 100609 . - 0 ID=Physo143651;Parent=Physo143651;rank=1 scaffold_146 . biological_region 99710 99713 0.999 + . logic_name=eponine scaffold_146 . biological_region 99837 99845 0.999 + . logic_name=eponine scaffold_146 . biological_region 99879 99886 0.999 + . logic_name=eponine scaffold_146 . biological_region 99904 99909 0.999 + . logic_name=eponine scaffold_146 . biological_region 99915 99919 0.999 - . logic_name=eponine scaffold_146 . biological_region 99931 99937 0.999 + . logic_name=eponine scaffold_146 . biological_region 99969 99974 0.999 + . logic_name=eponine scaffold_146 . repeat_region 100023 100072 . ? . description=dust scaffold_146 . repeat_region 101352 101401 . ? . description=dust scaffold_146 . repeat_region 101467 101530 . ? . description=dust scaffold_146 . repeat_region 104904 104953 . ? . description=dust scaffold_146 . biological_region 106434 106439 0.999 + . logic_name=eponine scaffold_146 . repeat_region 106650 117273 . ? . description=dust scaffold_146 . exon 100127 100609 . - . ID=Physo143651.1;Parent=Physo143651;constitutive=1;rank=1 scaffold_146 . repeat_region 120571 120984 . ? . description=dust scaffold_146 . biological_region 122123 122126 0.999 + . logic_name=eponine scaffold_146 . repeat_region 122196 122247 . ? . description=trf scaffold_146 . biological_region 122327 122327 0.999 - . logic_name=eponine scaffold_146 . repeat_region 122707 127433 . ? . description=dust scaffold_146 ensembl protein_coding_gene 122037 122432 . - . ID=Physo143652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1460023;logic_name=jgi_physo1_1 scaffold_146 ensembl transcript 122037 122432 . - . ID=Physo143652;Parent=Physo143652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_146 . CDS 122037 122432 . - 0 ID=Physo143652;Parent=Physo143652;rank=1 scaffold_146 . exon 122037 122432 . - . ID=Physo143652.1;Parent=Physo143652;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_144 1 130174 scaffold_144 . repeat_region 1649 4359 . ? . description=dust scaffold_144 . repeat_region 7116 7141 . ? . description=trf scaffold_144 ensembl protein_coding_gene 161 562 . + . ID=Physo143567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440001;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 161 562 . + . ID=Physo143567;Parent=Physo143567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 161 562 . + 0 ID=Physo143567;Parent=Physo143567;rank=1 scaffold_144 . exon 161 562 . + . ID=Physo143567.1;Parent=Physo143567;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 4452 7353 . - . ID=Physo143568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440002;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 4452 7353 . - . ID=Physo143568;Parent=Physo143568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 4452 4588 . - 0 ID=Physo143568;Parent=Physo143568;rank=3 scaffold_144 . exon 4452 4588 . - . ID=Physo143568.3;Parent=Physo143568;constitutive=1;ensembl_phase=1;rank=3 scaffold_144 . CDS 4750 7257 . - 0 ID=Physo143568;Parent=Physo143568;rank=2 scaffold_144 . exon 4750 7257 . - . ID=Physo143568.2;Parent=Physo143568;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_144 . CDS 7320 7353 . - 0 ID=Physo143568;Parent=Physo143568;rank=1 scaffold_144 . exon 7320 7353 . - . ID=Physo143568.1;Parent=Physo143568;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_144 ensembl protein_coding_gene 8583 13623 . - . ID=Physo143569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440003;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 8583 13623 . - . ID=Physo143569;Parent=Physo143569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 8583 9651 . - 0 ID=Physo143569;Parent=Physo143569;rank=6 scaffold_144 . exon 8583 9651 . - . ID=Physo143569.6;Parent=Physo143569;constitutive=1;ensembl_phase=2;rank=6 scaffold_144 . CDS 9679 10127 . - 0 ID=Physo143569;Parent=Physo143569;rank=5 scaffold_144 . CDS 10363 11242 . - 0 ID=Physo143569;Parent=Physo143569;rank=4 scaffold_144 . CDS 11292 12662 . - 0 ID=Physo143569;Parent=Physo143569;rank=3 scaffold_144 . CDS 13303 13448 . - 0 ID=Physo143569;Parent=Physo143569;rank=2 scaffold_144 . CDS 13573 13623 . - 0 ID=Physo143569;Parent=Physo143569;rank=1 scaffold_144 . biological_region 10979 10981 0.999 + . logic_name=eponine scaffold_144 ensembl protein_coding_gene 16897 17146 . + . ID=Physo123924;biotype=protein_coding;external_name=estExt_Genewise1.C_1440001;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 16897 17146 . + . ID=Physo123924;Parent=Physo123924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . exon 16897 17146 . + . ID=Physo123924.1;Parent=Physo123924;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_144 . CDS 16933 17004 . + 0 ID=Physo123924;Parent=Physo123924;rank=1 scaffold_144 . exon 9679 10127 . - . ID=Physo143569.5;Parent=Physo143569;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_144 . exon 10363 11242 . - . ID=Physo143569.4;Parent=Physo143569;constitutive=1;ensembl_phase=2;rank=4 scaffold_144 . exon 11292 12662 . - . ID=Physo143569.3;Parent=Physo143569;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_144 . exon 13303 13448 . - . ID=Physo143569.2;Parent=Physo143569;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_144 . exon 13573 13623 . - . ID=Physo143569.1;Parent=Physo143569;constitutive=1;rank=1 scaffold_144 . repeat_region 20934 20945 . ? . description=dust scaffold_144 . repeat_region 21866 21910 . ? . description=trf scaffold_144 . repeat_region 23207 26035 . ? . description=dust scaffold_144 . repeat_region 26036 28944 . ? . description=dust scaffold_144 ensembl protein_coding_gene 21298 21707 . - . ID=Physo143570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440004;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 21298 21707 . - . ID=Physo143570;Parent=Physo143570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 21298 21494 . - 0 ID=Physo143570;Parent=Physo143570;rank=2 scaffold_144 . exon 21298 21494 . - . ID=Physo143570.2;Parent=Physo143570;constitutive=1;ensembl_phase=1;rank=2 scaffold_144 . CDS 21515 21707 . - 0 ID=Physo143570;Parent=Physo143570;rank=1 scaffold_144 . exon 21515 21707 . - . ID=Physo143570.1;Parent=Physo143570;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_144 ensembl tRNA_gene 31901 31972 . - . ID=EPrPSOG00000000220;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_144 ensembl transcript 31901 31972 . - . ID=EPrPSOT00000000220;Parent=EPrPSOG00000000220;biotype=tRNA;logic_name=ncrna_eg scaffold_144 . exon 31901 31972 . - . ID=EPrPSOE00000000220;Parent=EPrPSOT00000000220;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 30102 30641 . + . ID=Physo143571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440005;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 30102 30641 . + . ID=Physo143571;Parent=Physo143571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 30102 30641 . + 0 ID=Physo143571;Parent=Physo143571;rank=1 scaffold_144 . exon 30102 30641 . + . ID=Physo143571.1;Parent=Physo143571;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 31158 31716 . + . ID=Physo143572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440006;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 31158 31716 . + . ID=Physo143572;Parent=Physo143572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 31158 31545 . + 0 ID=Physo143572;Parent=Physo143572;rank=1 scaffold_144 . exon 31158 31545 . + . ID=Physo143572.1;Parent=Physo143572;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_144 . CDS 31679 31716 . + 0 ID=Physo143572;Parent=Physo143572;rank=2 scaffold_144 . exon 31679 31716 . + . ID=Physo143572.2;Parent=Physo143572;constitutive=1;ensembl_phase=1;rank=2 scaffold_144 ensembl protein_coding_gene 33069 33652 . - . ID=Physo143573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440007;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 33069 33652 . - . ID=Physo143573;Parent=Physo143573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 33069 33153 . - 0 ID=Physo143573;Parent=Physo143573;rank=4 scaffold_144 . exon 33069 33153 . - . ID=Physo143573.4;Parent=Physo143573;constitutive=1;ensembl_phase=2;rank=4 scaffold_144 . CDS 33215 33318 . - 0 ID=Physo143573;Parent=Physo143573;rank=3 scaffold_144 . exon 33215 33318 . - . ID=Physo143573.3;Parent=Physo143573;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_144 . CDS 33422 33462 . - 0 ID=Physo143573;Parent=Physo143573;rank=2 scaffold_144 . exon 33422 33462 . - . ID=Physo143573.2;Parent=Physo143573;constitutive=1;ensembl_phase=1;rank=2 scaffold_144 . CDS 33526 33652 . - 0 ID=Physo143573;Parent=Physo143573;rank=1 scaffold_144 . exon 33526 33652 . - . ID=Physo143573.1;Parent=Physo143573;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_144 . repeat_region 37318 37479 . ? . description=trf scaffold_144 . repeat_region 37785 37794 . ? . description=dust scaffold_144 . biological_region 40164 40167 0.999 + . logic_name=eponine scaffold_144 . biological_region 40703 40705 0.999 + . logic_name=eponine scaffold_144 . repeat_region 40984 41094 . ? . description=trf scaffold_144 . biological_region 41143 41146 0.999 - . logic_name=eponine scaffold_144 . biological_region 41367 41370 0.999 + . logic_name=eponine scaffold_144 . repeat_region 41830 41879 . ? . description=dust scaffold_144 . repeat_region 42036 42044 . ? . description=dust scaffold_144 . biological_region 42600 42603 0.999 - . logic_name=eponine scaffold_144 . biological_region 42824 42827 0.999 + . logic_name=eponine scaffold_144 . repeat_region 42875 43010 . ? . description=trf scaffold_144 . repeat_region 43643 43658 . ? . description=dust scaffold_144 . biological_region 43792 43795 0.999 - . logic_name=eponine scaffold_144 ensembl protein_coding_gene 37532 39656 . - . ID=Physo143574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440008;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 37532 39656 . - . ID=Physo143574;Parent=Physo143574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 37532 37779 . - 0 ID=Physo143574;Parent=Physo143574;rank=3 scaffold_144 . exon 37532 37779 . - . ID=Physo143574.3;Parent=Physo143574;constitutive=1;ensembl_phase=1;rank=3 scaffold_144 . CDS 37861 38380 . - 0 ID=Physo143574;Parent=Physo143574;rank=2 scaffold_144 . exon 37861 38380 . - . ID=Physo143574.2;Parent=Physo143574;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_144 . CDS 38403 39656 . - 0 ID=Physo143574;Parent=Physo143574;rank=1 scaffold_144 . exon 38403 39656 . - . ID=Physo143574.1;Parent=Physo143574;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 53392 56491 . - . ID=Physo143575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440009;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 53392 56491 . - . ID=Physo143575;Parent=Physo143575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 53392 53437 . - 0 ID=Physo143575;Parent=Physo143575;rank=7 scaffold_144 . exon 53392 53437 . - . ID=Physo143575.7;Parent=Physo143575;constitutive=1;ensembl_phase=2;rank=7 scaffold_144 . CDS 53541 54145 . - 0 ID=Physo143575;Parent=Physo143575;rank=6 scaffold_144 . exon 53541 54145 . - . ID=Physo143575.6;Parent=Physo143575;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_144 . CDS 54284 54520 . - 0 ID=Physo143575;Parent=Physo143575;rank=5 scaffold_144 . exon 54284 54520 . - . ID=Physo143575.5;Parent=Physo143575;constitutive=1;rank=5 scaffold_144 . CDS 54540 55264 . - 0 ID=Physo143575;Parent=Physo143575;rank=4 scaffold_144 . exon 54540 55264 . - . ID=Physo143575.4;Parent=Physo143575;constitutive=1;ensembl_phase=1;rank=4 scaffold_144 . CDS 55468 55782 . - 0 ID=Physo143575;Parent=Physo143575;rank=3 scaffold_144 . exon 55468 55782 . - . ID=Physo143575.3;Parent=Physo143575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_144 . CDS 55894 56247 . - 0 ID=Physo143575;Parent=Physo143575;rank=2 scaffold_144 . CDS 56419 56491 . - 0 ID=Physo143575;Parent=Physo143575;rank=1 scaffold_144 . repeat_region 57072 57079 . ? . description=dust scaffold_144 . repeat_region 57416 57441 . ? . description=trf scaffold_144 . repeat_region 58198 58245 . ? . description=trf scaffold_144 . repeat_region 58208 58245 . ? . description=trf scaffold_144 . repeat_region 59511 59602 . ? . description=dust scaffold_144 . repeat_region 59518 59654 . ? . description=trf scaffold_144 . repeat_region 61310 63635 . ? . description=dust scaffold_144 . repeat_region 64063 64100 . ? . description=trf scaffold_144 . exon 55894 56247 . - . ID=Physo143575.2;Parent=Physo143575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_144 . exon 56419 56491 . - . ID=Physo143575.1;Parent=Physo143575;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_144 . biological_region 73058 73059 0.999 + . logic_name=eponine scaffold_144 . biological_region 73061 73065 0.999 - . logic_name=eponine scaffold_144 . biological_region 73150 73154 0.999 + . logic_name=eponine scaffold_144 . biological_region 73189 73192 0.999 - . logic_name=eponine scaffold_144 . biological_region 73243 73247 0.999 + . logic_name=eponine scaffold_144 ensembl protein_coding_gene 71718 72284 . - . ID=Physo143576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440010;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 71718 72284 . - . ID=Physo143576;Parent=Physo143576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 71718 72284 . - 0 ID=Physo143576;Parent=Physo143576;rank=1 scaffold_144 . exon 71718 72284 . - . ID=Physo143576.1;Parent=Physo143576;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 72901 74941 . + . ID=Physo143577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440011;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 72901 74941 . + . ID=Physo143577;Parent=Physo143577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 72901 73446 . + 0 ID=Physo143577;Parent=Physo143577;rank=1 scaffold_144 . exon 72901 73446 . + . ID=Physo143577.1;Parent=Physo143577;constitutive=1;rank=1 scaffold_144 . CDS 73529 73583 . + 0 ID=Physo143577;Parent=Physo143577;rank=2 scaffold_144 . exon 73529 73583 . + . ID=Physo143577.2;Parent=Physo143577;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_144 . CDS 73665 74110 . + 0 ID=Physo143577;Parent=Physo143577;rank=3 scaffold_144 . exon 73665 74110 . + . ID=Physo143577.3;Parent=Physo143577;constitutive=1;ensembl_phase=1;rank=3 scaffold_144 . CDS 74188 74721 . + 0 ID=Physo143577;Parent=Physo143577;rank=4 scaffold_144 . exon 74188 74721 . + . ID=Physo143577.4;Parent=Physo143577;constitutive=1;rank=4 scaffold_144 . CDS 74789 74941 . + 0 ID=Physo143577;Parent=Physo143577;rank=5 scaffold_144 . repeat_region 75456 75480 . ? . description=dust scaffold_144 . repeat_region 75456 75480 . ? . description=trf scaffold_144 . repeat_region 75729 75736 . ? . description=dust scaffold_144 . repeat_region 77284 77293 . ? . description=dust scaffold_144 . repeat_region 80225 80238 . ? . description=dust scaffold_144 ensembl protein_coding_gene 75595 76310 . - . ID=Physo123931;biotype=protein_coding;external_name=estExt_Genewise1.C_1440008;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 75595 76310 . - . ID=Physo123931;Parent=Physo123931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 75595 75711 . - 0 ID=Physo123931;Parent=Physo123931;rank=4 scaffold_144 . exon 75595 75711 . - . ID=Physo123931.4;Parent=Physo123931;constitutive=1;rank=4 scaffold_144 . CDS 75790 75981 . - 0 ID=Physo123931;Parent=Physo123931;rank=3 scaffold_144 . exon 75790 75981 . - . ID=Physo123931.3;Parent=Physo123931;constitutive=1;rank=3 scaffold_144 . CDS 76064 76195 . - 0 ID=Physo123931;Parent=Physo123931;rank=2 scaffold_144 . exon 76064 76195 . - . ID=Physo123931.2;Parent=Physo123931;constitutive=1;rank=2 scaffold_144 . CDS 76269 76310 . - 0 ID=Physo123931;Parent=Physo123931;rank=1 scaffold_144 . exon 76269 76310 . - . ID=Physo123931.1;Parent=Physo123931;constitutive=1;rank=1 scaffold_144 . exon 74789 74941 . + . ID=Physo143577.5;Parent=Physo143577;constitutive=1;rank=5 scaffold_144 ensembl protein_coding_gene 77381 78984 . + . ID=Physo143579;biotype=protein_coding;description=MADS-box transcription factor [Source:UniProtKB/TrEMBL%3BAcc:B5LUS3];external_name=estExt_fgenesh1_pg.C_1440013;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 77381 78984 . + . ID=Physo143579;Parent=Physo143579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 77381 77629 . + 0 ID=Physo143579;Parent=Physo143579;rank=1 scaffold_144 . exon 77381 77629 . + . ID=Physo143579.1;Parent=Physo143579;constitutive=1;rank=1 scaffold_144 . CDS 77717 78049 . + 0 ID=Physo143579;Parent=Physo143579;rank=2 scaffold_144 . exon 77717 78049 . + . ID=Physo143579.2;Parent=Physo143579;constitutive=1;rank=2 scaffold_144 . CDS 78130 78220 . + 0 ID=Physo143579;Parent=Physo143579;rank=3 scaffold_144 . exon 78130 78220 . + . ID=Physo143579.3;Parent=Physo143579;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_144 . CDS 78311 78984 . + 0 ID=Physo143579;Parent=Physo143579;rank=4 scaffold_144 . exon 78311 78984 . + . ID=Physo143579.4;Parent=Physo143579;constitutive=1;ensembl_phase=1;rank=4 scaffold_144 ensembl protein_coding_gene 81257 82721 . + . ID=Physo143581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440015;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 81257 82721 . + . ID=Physo143581;Parent=Physo143581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 81257 81849 . + 0 ID=Physo143581;Parent=Physo143581;rank=1 scaffold_144 . exon 81257 81849 . + . ID=Physo143581.1;Parent=Physo143581;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_144 . CDS 81915 82071 . + 0 ID=Physo143581;Parent=Physo143581;rank=2 scaffold_144 . exon 81915 82071 . + . ID=Physo143581.2;Parent=Physo143581;constitutive=1;ensembl_phase=2;rank=2 scaffold_144 . CDS 82156 82503 . + 0 ID=Physo143581;Parent=Physo143581;rank=3 scaffold_144 . exon 82156 82503 . + . ID=Physo143581.3;Parent=Physo143581;constitutive=1;rank=3 scaffold_144 . CDS 82630 82719 . + 0 ID=Physo143581;Parent=Physo143581;rank=4 scaffold_144 . exon 82630 82721 . + . ID=Physo143581.4;Parent=Physo143581;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_144 ensembl protein_coding_gene 79232 80161 . - . ID=Physo158780;biotype=protein_coding;external_name=C_scaffold_144000002;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 79232 80161 . - . ID=Physo158780;Parent=Physo158780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 79232 79417 . - 0 ID=Physo158780;Parent=Physo158780;rank=3 scaffold_144 . exon 79232 79417 . - . ID=Physo158780.3;Parent=Physo158780;constitutive=1;rank=3 scaffold_144 . CDS 79500 79666 . - 0 ID=Physo158780;Parent=Physo158780;rank=2 scaffold_144 . exon 79500 79666 . - . ID=Physo158780.2;Parent=Physo158780;constitutive=1;ensembl_phase=1;rank=2 scaffold_144 . CDS 79741 80161 . - 0 ID=Physo158780;Parent=Physo158780;rank=1 scaffold_144 . exon 79741 80161 . - . ID=Physo158780.1;Parent=Physo158780;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_144 . biological_region 86556 86557 0.999 + . logic_name=eponine scaffold_144 . biological_region 86655 86655 0.999 + . logic_name=eponine scaffold_144 . biological_region 90287 90289 0.999 - . logic_name=eponine scaffold_144 . biological_region 90518 90522 0.999 + . logic_name=eponine scaffold_144 . biological_region 90579 90581 0.999 + . logic_name=eponine scaffold_144 . biological_region 90653 90657 0.999 - . logic_name=eponine scaffold_144 . biological_region 91639 91641 0.999 - . logic_name=eponine scaffold_144 . biological_region 92026 92029 0.999 - . logic_name=eponine scaffold_144 . biological_region 92199 92203 0.999 + . logic_name=eponine scaffold_144 . biological_region 92238 92238 0.999 - . logic_name=eponine scaffold_144 . biological_region 92272 92275 0.999 + . logic_name=eponine scaffold_144 . biological_region 92294 92295 0.999 + . logic_name=eponine scaffold_144 . biological_region 92526 92529 0.999 - . logic_name=eponine scaffold_144 . biological_region 92730 92730 0.999 + . logic_name=eponine scaffold_144 . biological_region 92743 92748 0.999 + . logic_name=eponine scaffold_144 . biological_region 92852 92855 0.999 - . logic_name=eponine scaffold_144 . biological_region 92875 92875 0.999 - . logic_name=eponine scaffold_144 ensembl protein_coding_gene 85719 87149 . - . ID=Physo109565;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1440001;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 85719 87149 . - . ID=Physo109565;Parent=Physo109565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . exon 85719 87086 . - . ID=Physo109565.2;Parent=Physo109565;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_144 . CDS 85866 87086 . - 0 ID=Physo109565;Parent=Physo109565;rank=2 scaffold_144 . CDS 87135 87149 . - 0 ID=Physo109565;Parent=Physo109565;rank=1 scaffold_144 . exon 87135 87149 . - . ID=Physo109565.1;Parent=Physo109565;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 84092 85595 . - . ID=Physo143582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440016;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 84092 85595 . - . ID=Physo143582;Parent=Physo143582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 84092 84109 . - 0 ID=Physo143582;Parent=Physo143582;rank=2 scaffold_144 . exon 84092 84109 . - . ID=Physo143582.2;Parent=Physo143582;constitutive=1;rank=2 scaffold_144 . CDS 84153 85595 . - 0 ID=Physo143582;Parent=Physo143582;rank=1 scaffold_144 . exon 84153 85595 . - . ID=Physo143582.1;Parent=Physo143582;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 87583 90451 . - . ID=Physo143584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440018;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 87583 90451 . - . ID=Physo143584;Parent=Physo143584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 87583 89643 . - 0 ID=Physo143584;Parent=Physo143584;rank=3 scaffold_144 . exon 87583 89643 . - . ID=Physo143584.3;Parent=Physo143584;constitutive=1;rank=3 scaffold_144 . CDS 89727 89996 . - 0 ID=Physo143584;Parent=Physo143584;rank=2 scaffold_144 . exon 89727 89996 . - . ID=Physo143584.2;Parent=Physo143584;constitutive=1;rank=2 scaffold_144 . CDS 90083 90451 . - 0 ID=Physo143584;Parent=Physo143584;rank=1 scaffold_144 . exon 90083 90451 . - . ID=Physo143584.1;Parent=Physo143584;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 91185 91811 . - . ID=Physo143585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440019;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 91185 91811 . - . ID=Physo143585;Parent=Physo143585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 91185 91811 . - 0 ID=Physo143585;Parent=Physo143585;rank=1 scaffold_144 . exon 91185 91811 . - . ID=Physo143585.1;Parent=Physo143585;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 92223 94221 . + . ID=Physo143586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440020;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 92223 94221 . + . ID=Physo143586;Parent=Physo143586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 92223 92525 . + 0 ID=Physo143586;Parent=Physo143586;rank=1 scaffold_144 . exon 92223 92525 . + . ID=Physo143586.1;Parent=Physo143586;constitutive=1;rank=1 scaffold_144 . CDS 92608 93119 . + 0 ID=Physo143586;Parent=Physo143586;rank=2 scaffold_144 . exon 92608 93119 . + . ID=Physo143586.2;Parent=Physo143586;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_144 . CDS 93203 93506 . + 0 ID=Physo143586;Parent=Physo143586;rank=3 scaffold_144 . CDS 93570 93621 . + 0 ID=Physo143586;Parent=Physo143586;rank=4 scaffold_144 . CDS 93693 93925 . + 0 ID=Physo143586;Parent=Physo143586;rank=5 scaffold_144 . CDS 93988 94221 . + 0 ID=Physo143586;Parent=Physo143586;rank=6 scaffold_144 . exon 93203 93506 . + . ID=Physo143586.3;Parent=Physo143586;constitutive=1;ensembl_phase=2;rank=3 scaffold_144 . exon 93570 93621 . + . ID=Physo143586.4;Parent=Physo143586;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_144 . exon 93693 93925 . + . ID=Physo143586.5;Parent=Physo143586;constitutive=1;ensembl_phase=1;rank=5 scaffold_144 . exon 93988 94221 . + . ID=Physo143586.6;Parent=Physo143586;constitutive=1;rank=6 scaffold_144 ensembl protein_coding_gene 98158 99356 . - . ID=Physo143589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440023;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 98158 99356 . - . ID=Physo143589;Parent=Physo143589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 98158 98403 . - 0 ID=Physo143589;Parent=Physo143589;rank=2 scaffold_144 . exon 98158 98403 . - . ID=Physo143589.2;Parent=Physo143589;constitutive=1;rank=2 scaffold_144 . CDS 98940 99356 . - 0 ID=Physo143589;Parent=Physo143589;rank=1 scaffold_144 . exon 98940 99356 . - . ID=Physo143589.1;Parent=Physo143589;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 100275 101338 . + . ID=Physo143590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440024;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 100275 101338 . + . ID=Physo143590;Parent=Physo143590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . exon 100275 101338 . + . ID=Physo143590.1;Parent=Physo143590;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_144 . CDS 100324 101223 . + 0 ID=Physo143590;Parent=Physo143590;rank=1 scaffold_144 ensembl protein_coding_gene 94390 94835 . - . ID=Physo158782;biotype=protein_coding;external_name=C_scaffold_144000004;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 94390 94835 . - . ID=Physo158782;Parent=Physo158782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 94390 94548 . - 0 ID=Physo158782;Parent=Physo158782;rank=2 scaffold_144 . exon 94390 94548 . - . ID=Physo158782.2;Parent=Physo158782;constitutive=1;rank=2 scaffold_144 . CDS 94620 94835 . - 0 ID=Physo158782;Parent=Physo158782;rank=1 scaffold_144 . exon 94620 94835 . - . ID=Physo158782.1;Parent=Physo158782;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 95132 98075 . + . ID=Physo158783;biotype=protein_coding;external_name=C_scaffold_144000005;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 95132 98075 . + . ID=Physo158783;Parent=Physo158783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 95132 96808 . + 0 ID=Physo158783;Parent=Physo158783;rank=1 scaffold_144 . exon 95132 96808 . + . ID=Physo158783.1;Parent=Physo158783;constitutive=1;rank=1 scaffold_144 . CDS 97088 97213 . + 0 ID=Physo158783;Parent=Physo158783;rank=2 scaffold_144 . exon 97088 97213 . + . ID=Physo158783.2;Parent=Physo158783;constitutive=1;rank=2 scaffold_144 . CDS 97265 97333 . + 0 ID=Physo158783;Parent=Physo158783;rank=3 scaffold_144 . exon 97265 97333 . + . ID=Physo158783.3;Parent=Physo158783;constitutive=1;rank=3 scaffold_144 . CDS 97395 97631 . + 0 ID=Physo158783;Parent=Physo158783;rank=4 scaffold_144 . exon 97395 97631 . + . ID=Physo158783.4;Parent=Physo158783;constitutive=1;rank=4 scaffold_144 . CDS 97710 98075 . + 0 ID=Physo158783;Parent=Physo158783;rank=5 scaffold_144 . exon 97710 98075 . + . ID=Physo158783.5;Parent=Physo158783;constitutive=1;rank=5 scaffold_144 . biological_region 104493 104495 0.999 - . logic_name=eponine scaffold_144 . biological_region 104548 104549 0.999 + . logic_name=eponine scaffold_144 . biological_region 104651 104656 0.999 + . logic_name=eponine scaffold_144 . biological_region 104729 104731 0.999 + . logic_name=eponine scaffold_144 . biological_region 104766 104769 0.999 - . logic_name=eponine scaffold_144 . biological_region 105155 105155 0.999 - . logic_name=eponine scaffold_144 . biological_region 105405 105408 0.999 + . logic_name=eponine scaffold_144 . repeat_region 107587 107622 . ? . description=trf scaffold_144 . repeat_region 107695 107714 . ? . description=trf scaffold_144 . repeat_region 107718 107789 . ? . description=trf scaffold_144 . repeat_region 107798 107844 . ? . description=trf scaffold_144 . biological_region 108073 108077 0.999 - . logic_name=eponine scaffold_144 . biological_region 108127 108133 0.999 + . logic_name=eponine scaffold_144 . repeat_region 108616 108670 . ? . description=dust scaffold_144 . repeat_region 108621 108661 . ? . description=trf scaffold_144 . repeat_region 110013 110179 . - . description=GypsyPi-1c_LTR scaffold_144 ensembl protein_coding_gene 104349 106670 . - . ID=Physo123952;biotype=protein_coding;external_name=estExt_Genewise1.C_1440029;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 104349 106670 . - . ID=Physo123952;Parent=Physo123952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 104349 106616 . - 0 ID=Physo123952;Parent=Physo123952;rank=1 scaffold_144 . exon 104349 106670 . - . ID=Physo123952.1;Parent=Physo123952;constitutive=1;ensembl_phase=-1;rank=1 scaffold_144 ensembl protein_coding_gene 106963 108204 . - . ID=Physo143592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440026;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 106963 108204 . - . ID=Physo143592;Parent=Physo143592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 106963 108204 . - 0 ID=Physo143592;Parent=Physo143592;rank=1 scaffold_144 . exon 106963 108204 . - . ID=Physo143592.1;Parent=Physo143592;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 109253 109702 . + . ID=Physo143593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440027;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 109253 109702 . + . ID=Physo143593;Parent=Physo143593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 109253 109702 . + 0 ID=Physo143593;Parent=Physo143593;rank=1 scaffold_144 . exon 109253 109702 . + . ID=Physo143593.1;Parent=Physo143593;constitutive=1;rank=1 scaffold_144 ensembl protein_coding_gene 112320 116891 . - . ID=Physo143594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1440028;logic_name=jgi_physo1_1 scaffold_144 ensembl transcript 112320 116891 . - . ID=Physo143594;Parent=Physo143594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_144 . CDS 112320 112736 . - 0 ID=Physo143594;Parent=Physo143594;rank=6 scaffold_144 . exon 112320 112736 . - . ID=Physo143594.6;Parent=Physo143594;constitutive=1;rank=6 scaffold_144 . CDS 112910 112935 . - 0 ID=Physo143594;Parent=Physo143594;rank=5 scaffold_144 . exon 112910 112935 . - . ID=Physo143594.5;Parent=Physo143594;constitutive=1;ensembl_phase=1;rank=5 scaffold_144 . CDS 113090 114679 . - 0 ID=Physo143594;Parent=Physo143594;rank=4 scaffold_144 . exon 113090 114679 . - . ID=Physo143594.4;Parent=Physo143594;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_144 . CDS 114814 115029 . - 0 ID=Physo143594;Parent=Physo143594;rank=3 scaffold_144 . exon 114814 115029 . - . ID=Physo143594.3;Parent=Physo143594;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_144 . CDS 115103 115547 . - 0 ID=Physo143594;Parent=Physo143594;rank=2 scaffold_144 . exon 115103 115547 . - . ID=Physo143594.2;Parent=Physo143594;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_144 . CDS 115641 116891 . - 0 ID=Physo143594;Parent=Physo143594;rank=1 scaffold_144 . exon 115641 116891 . - . ID=Physo143594.1;Parent=Physo143594;constitutive=1;rank=1 scaffold_144 . repeat_region 128084 128698 . ? . description=dust scaffold_144 . repeat_region 129667 129725 . ? . description=dust scaffold_144 . repeat_region 129692 129712 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_145 1 130368 scaffold_145 . repeat_region 257 359 . ? . description=trf scaffold_145 . repeat_region 289 352 . ? . description=dust scaffold_145 . repeat_region 349 502 . ? . description=trf scaffold_145 . repeat_region 383 502 . ? . description=trf scaffold_145 . biological_region 714 717 0.999 - . logic_name=eponine scaffold_145 . biological_region 743 747 0.999 - . logic_name=eponine scaffold_145 . repeat_region 829 2131 . ? . description=dust scaffold_145 . repeat_region 2163 2214 . ? . description=trf scaffold_145 . biological_region 2624 2626 0.999 + . logic_name=eponine scaffold_145 . biological_region 2642 2645 0.999 - . logic_name=eponine scaffold_145 . biological_region 2686 2691 0.999 - . logic_name=eponine scaffold_145 . biological_region 2974 2974 0.999 - . logic_name=eponine scaffold_145 . biological_region 3797 3799 0.999 - . logic_name=eponine scaffold_145 . biological_region 3797 3800 0.999 + . logic_name=eponine scaffold_145 . biological_region 3896 3897 0.999 + . logic_name=eponine scaffold_145 . biological_region 4007 4011 0.999 - . logic_name=eponine scaffold_145 . biological_region 4064 4065 0.999 + . logic_name=eponine scaffold_145 . biological_region 4084 4092 0.999 + . logic_name=eponine scaffold_145 . biological_region 4216 4216 0.999 + . logic_name=eponine scaffold_145 . biological_region 4333 4333 0.999 - . logic_name=eponine scaffold_145 . biological_region 4420 4426 0.999 - . logic_name=eponine scaffold_145 . biological_region 4680 4681 0.999 + . logic_name=eponine scaffold_145 . biological_region 5040 5049 0.999 - . logic_name=eponine scaffold_145 . biological_region 5253 5255 0.999 + . logic_name=eponine scaffold_145 . biological_region 5305 5313 0.999 + . logic_name=eponine scaffold_145 . repeat_region 5330 5416 . ? . description=trf scaffold_145 . biological_region 5330 5334 0.999 + . logic_name=eponine scaffold_145 . repeat_region 5342 5425 . ? . description=trf scaffold_145 . biological_region 5346 5350 0.999 - . logic_name=eponine scaffold_145 . biological_region 5387 5392 0.999 - . logic_name=eponine scaffold_145 . biological_region 5432 5438 0.999 - . logic_name=eponine scaffold_145 . biological_region 5458 5464 0.999 - . logic_name=eponine scaffold_145 . biological_region 5486 5490 0.999 - . logic_name=eponine scaffold_145 . repeat_region 6403 6502 . ? . description=trf scaffold_145 . biological_region 6644 6648 0.999 + . logic_name=eponine scaffold_145 . biological_region 6648 6651 0.999 - . logic_name=eponine scaffold_145 . biological_region 6720 6727 0.999 - . logic_name=eponine scaffold_145 . repeat_region 6907 6942 . ? . description=trf scaffold_145 . biological_region 7044 7044 0.999 + . logic_name=eponine scaffold_145 . biological_region 7281 7282 0.999 + . logic_name=eponine scaffold_145 . biological_region 7310 7310 0.999 - . logic_name=eponine scaffold_145 . repeat_region 7323 7365 . ? . description=trf scaffold_145 . biological_region 7566 7568 0.999 + . logic_name=eponine scaffold_145 . repeat_region 8228 8281 . ? . description=trf scaffold_145 . biological_region 8241 8243 0.999 + . logic_name=eponine scaffold_145 . biological_region 9253 9258 0.999 + . logic_name=eponine scaffold_145 . biological_region 9299 9303 0.999 + . logic_name=eponine scaffold_145 ensembl protein_coding_gene 6433 9016 . - . ID=Physo143595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450001;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 6433 9016 . - . ID=Physo143595;Parent=Physo143595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 6433 6767 . - 0 ID=Physo143595;Parent=Physo143595;rank=5 scaffold_145 . exon 6433 6767 . - . ID=Physo143595.5;Parent=Physo143595;constitutive=1;ensembl_phase=1;rank=5 scaffold_145 . CDS 6816 6960 . - 0 ID=Physo143595;Parent=Physo143595;rank=4 scaffold_145 . exon 6816 6960 . - . ID=Physo143595.4;Parent=Physo143595;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_145 . CDS 7191 8277 . - 0 ID=Physo143595;Parent=Physo143595;rank=3 scaffold_145 . exon 7191 8277 . - . ID=Physo143595.3;Parent=Physo143595;constitutive=1;ensembl_phase=2;rank=3 scaffold_145 . CDS 8346 8962 . - 0 ID=Physo143595;Parent=Physo143595;rank=2 scaffold_145 . exon 8346 8962 . - . ID=Physo143595.2;Parent=Physo143595;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_145 . CDS 9014 9016 . - 0 ID=Physo143595;Parent=Physo143595;rank=1 scaffold_145 . exon 9014 9016 . - . ID=Physo143595.1;Parent=Physo143595;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 23080 26280 . + . ID=Physo143596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450002;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 23080 26280 . + . ID=Physo143596;Parent=Physo143596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 23080 23151 . + 0 ID=Physo143596;Parent=Physo143596;rank=1 scaffold_145 . exon 23080 23151 . + . ID=Physo143596.1;Parent=Physo143596;constitutive=1;rank=1 scaffold_145 . CDS 23231 23693 . + 0 ID=Physo143596;Parent=Physo143596;rank=2 scaffold_145 . exon 23231 23693 . + . ID=Physo143596.2;Parent=Physo143596;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_145 . CDS 23747 23919 . + 0 ID=Physo143596;Parent=Physo143596;rank=3 scaffold_145 . exon 23747 23919 . + . ID=Physo143596.3;Parent=Physo143596;constitutive=1;ensembl_phase=1;rank=3 scaffold_145 . CDS 24088 24893 . + 0 ID=Physo143596;Parent=Physo143596;rank=4 scaffold_145 . exon 24088 24893 . + . ID=Physo143596.4;Parent=Physo143596;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_145 . CDS 25374 26280 . + 0 ID=Physo143596;Parent=Physo143596;rank=5 scaffold_145 . exon 25374 26280 . + . ID=Physo143596.5;Parent=Physo143596;constitutive=1;ensembl_phase=2;rank=5 scaffold_145 . repeat_region 31394 31455 . ? . description=trf scaffold_145 . biological_region 32281 32283 0.999 + . logic_name=eponine scaffold_145 . biological_region 32342 32349 0.999 - . logic_name=eponine scaffold_145 . biological_region 32369 32370 0.999 + . logic_name=eponine scaffold_145 . biological_region 32399 32402 0.999 + . logic_name=eponine scaffold_145 . biological_region 33702 33711 0.999 + . logic_name=eponine scaffold_145 . biological_region 34407 34408 0.999 + . logic_name=eponine scaffold_145 . repeat_region 35570 35622 . ? . description=trf scaffold_145 . repeat_region 35570 35629 . ? . description=dust scaffold_145 . repeat_region 35570 35629 . ? . description=trf scaffold_145 ensembl protein_coding_gene 30165 35570 . - . ID=Physo143597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450003;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 30165 35570 . - . ID=Physo143597;Parent=Physo143597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 30165 31327 . - 0 ID=Physo143597;Parent=Physo143597;rank=5 scaffold_145 . exon 30165 31327 . - . ID=Physo143597.5;Parent=Physo143597;constitutive=1;ensembl_phase=1;rank=5 scaffold_145 . CDS 31462 31530 . - 0 ID=Physo143597;Parent=Physo143597;rank=4 scaffold_145 . exon 31462 31530 . - . ID=Physo143597.4;Parent=Physo143597;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_145 . CDS 31597 33106 . - 0 ID=Physo143597;Parent=Physo143597;rank=3 scaffold_145 . exon 31597 33106 . - . ID=Physo143597.3;Parent=Physo143597;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_145 . CDS 33178 33632 . - 0 ID=Physo143597;Parent=Physo143597;rank=2 scaffold_145 . exon 33178 33632 . - . ID=Physo143597.2;Parent=Physo143597;constitutive=1;ensembl_phase=1;rank=2 scaffold_145 . CDS 33698 35570 . - 0 ID=Physo143597;Parent=Physo143597;rank=1 scaffold_145 . exon 33698 35570 . - . ID=Physo143597.1;Parent=Physo143597;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 . repeat_region 40207 40531 . + . description=Gypsy-2-I_PI-int scaffold_145 ensembl protein_coding_gene 46320 47563 . - . ID=Physo109566;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1450001;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 46320 47563 . - . ID=Physo109566;Parent=Physo109566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . exon 46320 46993 . - . ID=Physo109566.2;Parent=Physo109566;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_145 . CDS 46429 46993 . - 0 ID=Physo109566;Parent=Physo109566;rank=2 scaffold_145 . CDS 47064 47506 . - 0 ID=Physo109566;Parent=Physo109566;rank=1 scaffold_145 ensembl protein_coding_gene 44064 46298 . + . ID=Physo143599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450005;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 44064 46298 . + . ID=Physo143599;Parent=Physo143599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 44064 44112 . + 0 ID=Physo143599;Parent=Physo143599;rank=1 scaffold_145 . exon 44064 44112 . + . ID=Physo143599.1;Parent=Physo143599;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 . CDS 44200 46298 . + 0 ID=Physo143599;Parent=Physo143599;rank=2 scaffold_145 . exon 44200 46298 . + . ID=Physo143599.2;Parent=Physo143599;constitutive=1;ensembl_phase=1;rank=2 scaffold_145 ensembl protein_coding_gene 42554 43970 . + . ID=Physo158784;biotype=protein_coding;external_name=C_scaffold_145000001;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 42554 43970 . + . ID=Physo158784;Parent=Physo158784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 42554 42875 . + 0 ID=Physo158784;Parent=Physo158784;rank=1 scaffold_145 . exon 42554 42875 . + . ID=Physo158784.1;Parent=Physo158784;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 . CDS 42946 43410 . + 0 ID=Physo158784;Parent=Physo158784;rank=2 scaffold_145 . exon 42946 43410 . + . ID=Physo158784.2;Parent=Physo158784;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_145 . CDS 43468 43970 . + 0 ID=Physo158784;Parent=Physo158784;rank=3 scaffold_145 . exon 43468 43970 . + . ID=Physo158784.3;Parent=Physo158784;constitutive=1;ensembl_phase=1;rank=3 scaffold_145 . biological_region 48300 48302 0.999 + . logic_name=eponine scaffold_145 . repeat_region 49818 49842 . ? . description=dust scaffold_145 . repeat_region 50310 50362 . ? . description=trf scaffold_145 . repeat_region 50316 50364 . ? . description=trf scaffold_145 . repeat_region 50362 50423 . ? . description=dust scaffold_145 . repeat_region 50362 50423 . ? . description=trf scaffold_145 . biological_region 50416 50421 0.999 - . logic_name=eponine scaffold_145 . biological_region 50455 50462 0.999 - . logic_name=eponine scaffold_145 . repeat_region 51218 51229 . ? . description=dust scaffold_145 . biological_region 53849 53851 0.999 + . logic_name=eponine scaffold_145 . exon 47064 47563 . - . ID=Physo109566.1;Parent=Physo109566;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_145 ensembl protein_coding_gene 49836 50723 . - . ID=Physo109567;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1450002;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 49836 50723 . - . ID=Physo109567;Parent=Physo109567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . exon 49836 50723 . - . ID=Physo109567.1;Parent=Physo109567;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_145 . CDS 50019 50708 . - 0 ID=Physo109567;Parent=Physo109567;rank=1 scaffold_145 ensembl protein_coding_gene 47878 49338 . - . ID=Physo143601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450007;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 47878 49338 . - . ID=Physo143601;Parent=Physo143601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 47878 47973 . - 0 ID=Physo143601;Parent=Physo143601;rank=7 scaffold_145 . exon 47878 47973 . - . ID=Physo143601.7;Parent=Physo143601;constitutive=1;rank=7 scaffold_145 . CDS 48057 48170 . - 0 ID=Physo143601;Parent=Physo143601;rank=6 scaffold_145 . exon 48057 48170 . - . ID=Physo143601.6;Parent=Physo143601;constitutive=1;rank=6 scaffold_145 . CDS 48250 48426 . - 0 ID=Physo143601;Parent=Physo143601;rank=5 scaffold_145 . exon 48250 48426 . - . ID=Physo143601.5;Parent=Physo143601;constitutive=1;rank=5 scaffold_145 . CDS 48500 48680 . - 0 ID=Physo143601;Parent=Physo143601;rank=4 scaffold_145 . exon 48500 48680 . - . ID=Physo143601.4;Parent=Physo143601;constitutive=1;ensembl_phase=2;rank=4 scaffold_145 . CDS 48755 48866 . - 0 ID=Physo143601;Parent=Physo143601;rank=3 scaffold_145 . exon 48755 48866 . - . ID=Physo143601.3;Parent=Physo143601;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_145 . CDS 48941 49019 . - 0 ID=Physo143601;Parent=Physo143601;rank=2 scaffold_145 . exon 48941 49019 . - . ID=Physo143601.2;Parent=Physo143601;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_145 . CDS 49084 49338 . - 0 ID=Physo143601;Parent=Physo143601;rank=1 scaffold_145 . exon 49084 49338 . - . ID=Physo143601.1;Parent=Physo143601;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 59104 60415 . - . ID=Physo109568;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1450003;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 59104 60415 . - . ID=Physo109568;Parent=Physo109568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 59104 59206 . - 0 ID=Physo109568;Parent=Physo109568;rank=6 scaffold_145 . exon 59104 59206 . - . ID=Physo109568.6;Parent=Physo109568;constitutive=1;ensembl_phase=2;rank=6 scaffold_145 . CDS 59296 59428 . - 0 ID=Physo109568;Parent=Physo109568;rank=5 scaffold_145 . exon 59296 59428 . - . ID=Physo109568.5;Parent=Physo109568;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_145 . CDS 59501 59584 . - 0 ID=Physo109568;Parent=Physo109568;rank=4 scaffold_145 . exon 59501 59584 . - . ID=Physo109568.4;Parent=Physo109568;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_145 . CDS 59663 59767 . - 0 ID=Physo109568;Parent=Physo109568;rank=3 scaffold_145 . exon 59663 59767 . - . ID=Physo109568.3;Parent=Physo109568;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_145 . CDS 59838 60252 . - 0 ID=Physo109568;Parent=Physo109568;rank=2 scaffold_145 . exon 59838 60252 . - . ID=Physo109568.2;Parent=Physo109568;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_145 . CDS 60332 60415 . - 0 ID=Physo109568;Parent=Physo109568;rank=1 scaffold_145 . exon 60332 60415 . - . ID=Physo109568.1;Parent=Physo109568;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 58510 59004 . + . ID=Physo143603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450009;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 58510 59004 . + . ID=Physo143603;Parent=Physo143603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 58510 58579 . + 0 ID=Physo143603;Parent=Physo143603;rank=1 scaffold_145 . exon 58510 58579 . + . ID=Physo143603.1;Parent=Physo143603;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 . CDS 58685 59004 . + 0 ID=Physo143603;Parent=Physo143603;rank=2 scaffold_145 . exon 58685 59004 . + . ID=Physo143603.2;Parent=Physo143603;constitutive=1;ensembl_phase=1;rank=2 scaffold_145 ensembl protein_coding_gene 60661 61665 . + . ID=Physo143605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450011;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 60661 61665 . + . ID=Physo143605;Parent=Physo143605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 60661 61665 . + 0 ID=Physo143605;Parent=Physo143605;rank=1 scaffold_145 . exon 60661 61665 . + . ID=Physo143605.1;Parent=Physo143605;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 61980 64874 . - . ID=Physo143606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450012;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 61980 64874 . - . ID=Physo143606;Parent=Physo143606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 61980 62950 . - 0 ID=Physo143606;Parent=Physo143606;rank=8 scaffold_145 . exon 61980 62950 . - . ID=Physo143606.8;Parent=Physo143606;constitutive=1;ensembl_phase=1;rank=8 scaffold_145 . CDS 63083 63323 . - 0 ID=Physo143606;Parent=Physo143606;rank=7 scaffold_145 . exon 63083 63323 . - . ID=Physo143606.7;Parent=Physo143606;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_145 . CDS 63406 63877 . - 0 ID=Physo143606;Parent=Physo143606;rank=6 scaffold_145 . exon 63406 63877 . - . ID=Physo143606.6;Parent=Physo143606;constitutive=1;ensembl_phase=2;rank=6 scaffold_145 . CDS 63955 64145 . - 0 ID=Physo143606;Parent=Physo143606;rank=5 scaffold_145 . exon 63955 64145 . - . ID=Physo143606.5;Parent=Physo143606;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_145 . CDS 64236 64381 . - 0 ID=Physo143606;Parent=Physo143606;rank=4 scaffold_145 . exon 64236 64381 . - . ID=Physo143606.4;Parent=Physo143606;constitutive=1;ensembl_phase=1;rank=4 scaffold_145 . CDS 64456 64558 . - 0 ID=Physo143606;Parent=Physo143606;rank=3 scaffold_145 . exon 64456 64558 . - . ID=Physo143606.3;Parent=Physo143606;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_145 . CDS 64614 64722 . - 0 ID=Physo143606;Parent=Physo143606;rank=2 scaffold_145 . exon 64614 64722 . - . ID=Physo143606.2;Parent=Physo143606;constitutive=1;ensembl_phase=2;rank=2 scaffold_145 . CDS 64825 64874 . - 0 ID=Physo143606;Parent=Physo143606;rank=1 scaffold_145 . exon 64825 64874 . - . ID=Physo143606.1;Parent=Physo143606;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_145 . biological_region 65623 65627 0.999 - . logic_name=eponine scaffold_145 . repeat_region 67766 67797 . ? . description=trf scaffold_145 . repeat_region 67769 67803 . ? . description=trf scaffold_145 . biological_region 68888 68889 0.999 - . logic_name=eponine scaffold_145 . repeat_region 69108 69128 . ? . description=trf scaffold_145 . biological_region 70018 70022 0.999 + . logic_name=eponine scaffold_145 . repeat_region 70509 70529 . ? . description=trf scaffold_145 . repeat_region 73750 73812 . ? . description=dust scaffold_145 . repeat_region 73753 73794 . ? . description=trf scaffold_145 . repeat_region 73767 73813 . ? . description=trf scaffold_145 ensembl protein_coding_gene 68954 69766 . + . ID=Physo109569;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1450004;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 68954 69766 . + . ID=Physo109569;Parent=Physo109569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . exon 68954 69052 . + . ID=Physo109569.1;Parent=Physo109569;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_145 . CDS 68955 69052 . + 0 ID=Physo109569;Parent=Physo109569;rank=1 scaffold_145 . CDS 69134 69692 . + 0 ID=Physo109569;Parent=Physo109569;rank=2 scaffold_145 . exon 69134 69766 . + . ID=Physo109569.2;Parent=Physo109569;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_145 ensembl protein_coding_gene 70075 70707 . - . ID=Physo123984;biotype=protein_coding;external_name=estExt_Genewise1.C_1450026;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 70075 70707 . - . ID=Physo123984;Parent=Physo123984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . exon 70075 70503 . - . ID=Physo123984.2;Parent=Physo123984;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_145 . CDS 70077 70503 . - 0 ID=Physo123984;Parent=Physo123984;rank=2 scaffold_145 . CDS 70585 70706 . - 0 ID=Physo123984;Parent=Physo123984;rank=1 scaffold_145 . exon 70585 70707 . - . ID=Physo123984.1;Parent=Physo123984;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_145 ensembl protein_coding_gene 65384 67834 . + . ID=Physo143607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450013;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 65384 67834 . + . ID=Physo143607;Parent=Physo143607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . exon 65384 65461 . + . ID=Physo143607.1;Parent=Physo143607;constitutive=1;ensembl_phase=-1;rank=1 scaffold_145 . CDS 65429 65461 . + 0 ID=Physo143607;Parent=Physo143607;rank=1 scaffold_145 . CDS 65580 65618 . + 0 ID=Physo143607;Parent=Physo143607;rank=2 scaffold_145 . exon 65580 65618 . + . ID=Physo143607.2;Parent=Physo143607;constitutive=1;rank=2 scaffold_145 . CDS 65729 65848 . + 0 ID=Physo143607;Parent=Physo143607;rank=3 scaffold_145 . exon 65729 65848 . + . ID=Physo143607.3;Parent=Physo143607;constitutive=1;rank=3 scaffold_145 . CDS 66270 66293 . + 0 ID=Physo143607;Parent=Physo143607;rank=4 scaffold_145 . exon 66270 66293 . + . ID=Physo143607.4;Parent=Physo143607;constitutive=1;rank=4 scaffold_145 . CDS 66388 66476 . + 0 ID=Physo143607;Parent=Physo143607;rank=5 scaffold_145 . exon 66388 66476 . + . ID=Physo143607.5;Parent=Physo143607;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_145 . CDS 66544 66826 . + 0 ID=Physo143607;Parent=Physo143607;rank=6 scaffold_145 . exon 66544 66826 . + . ID=Physo143607.6;Parent=Physo143607;constitutive=1;ensembl_phase=2;rank=6 scaffold_145 . CDS 66894 66962 . + 0 ID=Physo143607;Parent=Physo143607;rank=7 scaffold_145 . exon 66894 66962 . + . ID=Physo143607.7;Parent=Physo143607;constitutive=1;rank=7 scaffold_145 . CDS 67030 67289 . + 0 ID=Physo143607;Parent=Physo143607;rank=8 scaffold_145 . exon 67030 67289 . + . ID=Physo143607.8;Parent=Physo143607;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_145 . CDS 67349 67456 . + 0 ID=Physo143607;Parent=Physo143607;rank=9 scaffold_145 . exon 67349 67456 . + . ID=Physo143607.9;Parent=Physo143607;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_145 . CDS 67534 67834 . + 0 ID=Physo143607;Parent=Physo143607;rank=10 scaffold_145 . exon 67534 67834 . + . ID=Physo143607.10;Parent=Physo143607;constitutive=1;ensembl_phase=2;rank=10 scaffold_145 ensembl protein_coding_gene 73593 75546 . + . ID=Physo143610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450016;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 73593 75546 . + . ID=Physo143610;Parent=Physo143610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 73593 73799 . + 0 ID=Physo143610;Parent=Physo143610;rank=1 scaffold_145 . exon 73593 73799 . + . ID=Physo143610.1;Parent=Physo143610;constitutive=1;rank=1 scaffold_145 . CDS 73988 74050 . + 0 ID=Physo143610;Parent=Physo143610;rank=2 scaffold_145 . exon 73988 74050 . + . ID=Physo143610.2;Parent=Physo143610;constitutive=1;rank=2 scaffold_145 . CDS 74146 75546 . + 0 ID=Physo143610;Parent=Physo143610;rank=3 scaffold_145 . exon 74146 75546 . + . ID=Physo143610.3;Parent=Physo143610;constitutive=1;rank=3 scaffold_145 ensembl protein_coding_gene 79069 80622 . - . ID=Physo109571;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1450006;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 79069 80622 . - . ID=Physo109571;Parent=Physo109571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . exon 79069 80622 . - . ID=Physo109571.1;Parent=Physo109571;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_145 . CDS 79228 80622 . - 0 ID=Physo109571;Parent=Physo109571;rank=1 scaffold_145 ensembl protein_coding_gene 75646 76928 . - . ID=Physo143611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450017;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 75646 76928 . - . ID=Physo143611;Parent=Physo143611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 75646 76905 . - 0 ID=Physo143611;Parent=Physo143611;rank=1 scaffold_145 . exon 75646 76928 . - . ID=Physo143611.1;Parent=Physo143611;constitutive=1;ensembl_phase=-1;rank=1 scaffold_145 ensembl protein_coding_gene 83435 84349 . - . ID=Physo143613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450019;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 83435 84349 . - . ID=Physo143613;Parent=Physo143613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 83435 83931 . - 0 ID=Physo143613;Parent=Physo143613;rank=3 scaffold_145 . exon 83435 83931 . - . ID=Physo143613.3;Parent=Physo143613;constitutive=1;ensembl_phase=1;rank=3 scaffold_145 . CDS 83973 84137 . - 0 ID=Physo143613;Parent=Physo143613;rank=2 scaffold_145 . CDS 84268 84349 . - 0 ID=Physo143613;Parent=Physo143613;rank=1 scaffold_145 . repeat_region 85609 85616 . ? . description=dust scaffold_145 . biological_region 86068 86072 0.999 + . logic_name=eponine scaffold_145 . biological_region 86094 86096 0.999 + . logic_name=eponine scaffold_145 . biological_region 86222 86227 0.999 - . logic_name=eponine scaffold_145 . biological_region 86395 86399 0.999 - . logic_name=eponine scaffold_145 . biological_region 90321 90327 0.999 + . logic_name=eponine scaffold_145 . biological_region 90524 90530 0.999 - . logic_name=eponine scaffold_145 . repeat_region 90671 90734 . ? . description=dust scaffold_145 . repeat_region 90680 90726 . ? . description=trf scaffold_145 . biological_region 91843 91844 0.999 + . logic_name=eponine scaffold_145 . biological_region 91908 91910 0.999 + . logic_name=eponine scaffold_145 . biological_region 91957 91962 0.999 - . logic_name=eponine scaffold_145 ensembl protein_coding_gene 91697 92707 . - . ID=Physo124009;biotype=protein_coding;external_name=estExt_Genewise1.C_1450051;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 91697 92707 . - . ID=Physo124009;Parent=Physo124009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . exon 91697 92389 . - . ID=Physo124009.2;Parent=Physo124009;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_145 . CDS 91776 92389 . - 0 ID=Physo124009;Parent=Physo124009;rank=2 scaffold_145 . CDS 92691 92694 . - 0 ID=Physo124009;Parent=Physo124009;rank=1 scaffold_145 . exon 92691 92707 . - . ID=Physo124009.1;Parent=Physo124009;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_145 . exon 83973 84137 . - . ID=Physo143613.2;Parent=Physo143613;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_145 . exon 84268 84349 . - . ID=Physo143613.1;Parent=Physo143613;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 ensembl protein_coding_gene 86086 88894 . + . ID=Physo143614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450020;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 86086 88894 . + . ID=Physo143614;Parent=Physo143614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 86086 88827 . + 0 ID=Physo143614;Parent=Physo143614;rank=1 scaffold_145 . exon 86086 88894 . + . ID=Physo143614.1;Parent=Physo143614;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_145 ensembl protein_coding_gene 89690 90572 . - . ID=Physo143615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450021;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 89690 90572 . - . ID=Physo143615;Parent=Physo143615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 89690 90001 . - 0 ID=Physo143615;Parent=Physo143615;rank=4 scaffold_145 . exon 89690 90001 . - . ID=Physo143615.4;Parent=Physo143615;constitutive=1;rank=4 scaffold_145 . CDS 90022 90036 . - 0 ID=Physo143615;Parent=Physo143615;rank=3 scaffold_145 . exon 90022 90036 . - . ID=Physo143615.3;Parent=Physo143615;constitutive=1;rank=3 scaffold_145 . CDS 90080 90154 . - 0 ID=Physo143615;Parent=Physo143615;rank=2 scaffold_145 . exon 90080 90154 . - . ID=Physo143615.2;Parent=Physo143615;constitutive=1;rank=2 scaffold_145 . CDS 90222 90572 . - 0 ID=Physo143615;Parent=Physo143615;rank=1 scaffold_145 . exon 90222 90572 . - . ID=Physo143615.1;Parent=Physo143615;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 92956 94623 . + . ID=Physo143617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450023;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 92956 94623 . + . ID=Physo143617;Parent=Physo143617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . exon 92956 93021 . + . ID=Physo143617.1;Parent=Physo143617;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_145 . CDS 92976 93021 . + 0 ID=Physo143617;Parent=Physo143617;rank=1 scaffold_145 . CDS 93125 93175 . + 0 ID=Physo143617;Parent=Physo143617;rank=2 scaffold_145 . exon 93125 93175 . + . ID=Physo143617.2;Parent=Physo143617;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_145 . CDS 93255 93786 . + 0 ID=Physo143617;Parent=Physo143617;rank=3 scaffold_145 . CDS 93866 94523 . + 0 ID=Physo143617;Parent=Physo143617;rank=4 scaffold_145 ensembl protein_coding_gene 96163 97882 . + . ID=Physo109573;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1450008;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 96163 97882 . + . ID=Physo109573;Parent=Physo109573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 96163 96225 . + 0 ID=Physo109573;Parent=Physo109573;rank=1 scaffold_145 . exon 96163 96225 . + . ID=Physo109573.1;Parent=Physo109573;constitutive=1;rank=1 scaffold_145 . CDS 96644 97882 . + 0 ID=Physo109573;Parent=Physo109573;rank=2 scaffold_145 . exon 96644 97882 . + . ID=Physo109573.2;Parent=Physo109573;constitutive=1;rank=2 scaffold_145 . exon 93255 93786 . + . ID=Physo143617.3;Parent=Physo143617;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_145 . exon 93866 94623 . + . ID=Physo143617.4;Parent=Physo143617;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_145 ensembl protein_coding_gene 94717 96006 . - . ID=Physo143618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450024;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 94717 96006 . - . ID=Physo143618;Parent=Physo143618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 94717 94776 . - 0 ID=Physo143618;Parent=Physo143618;rank=4 scaffold_145 . exon 94717 94776 . - . ID=Physo143618.4;Parent=Physo143618;constitutive=1;rank=4 scaffold_145 . CDS 94860 95429 . - 0 ID=Physo143618;Parent=Physo143618;rank=3 scaffold_145 . exon 94860 95429 . - . ID=Physo143618.3;Parent=Physo143618;constitutive=1;rank=3 scaffold_145 . CDS 95501 95938 . - 0 ID=Physo143618;Parent=Physo143618;rank=2 scaffold_145 . exon 95501 95938 . - . ID=Physo143618.2;Parent=Physo143618;constitutive=1;rank=2 scaffold_145 . CDS 95959 96006 . - 0 ID=Physo143618;Parent=Physo143618;rank=1 scaffold_145 . exon 95959 96006 . - . ID=Physo143618.1;Parent=Physo143618;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 98159 98614 . + . ID=Physo143620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450026;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 98159 98614 . + . ID=Physo143620;Parent=Physo143620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 98159 98521 . + 0 ID=Physo143620;Parent=Physo143620;rank=1 scaffold_145 . exon 98159 98614 . + . ID=Physo143620.1;Parent=Physo143620;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_145 ensembl protein_coding_gene 98812 104449 . - . ID=Physo143621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450027;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 98812 104449 . - . ID=Physo143621;Parent=Physo143621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 98812 100200 . - 0 ID=Physo143621;Parent=Physo143621;rank=13 scaffold_145 . exon 98812 100200 . - . ID=Physo143621.13;Parent=Physo143621;constitutive=1;rank=13 scaffold_145 . CDS 100276 100578 . - 0 ID=Physo143621;Parent=Physo143621;rank=12 scaffold_145 . exon 100276 100578 . - . ID=Physo143621.12;Parent=Physo143621;constitutive=1;rank=12 scaffold_145 . CDS 100651 100728 . - 0 ID=Physo143621;Parent=Physo143621;rank=11 scaffold_145 . exon 100651 100728 . - . ID=Physo143621.11;Parent=Physo143621;constitutive=1;rank=11 scaffold_145 . CDS 100801 100869 . - 0 ID=Physo143621;Parent=Physo143621;rank=10 scaffold_145 . exon 100801 100869 . - . ID=Physo143621.10;Parent=Physo143621;constitutive=1;rank=10 scaffold_145 . CDS 100935 100951 . - 0 ID=Physo143621;Parent=Physo143621;rank=9 scaffold_145 . exon 100935 100951 . - . ID=Physo143621.9;Parent=Physo143621;constitutive=1;ensembl_phase=1;rank=9 scaffold_145 . CDS 101111 101167 . - 0 ID=Physo143621;Parent=Physo143621;rank=8 scaffold_145 . exon 101111 101167 . - . ID=Physo143621.8;Parent=Physo143621;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_145 . CDS 101417 101481 . - 0 ID=Physo143621;Parent=Physo143621;rank=7 scaffold_145 . exon 101417 101481 . - . ID=Physo143621.7;Parent=Physo143621;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_145 . CDS 101560 101621 . - 0 ID=Physo143621;Parent=Physo143621;rank=6 scaffold_145 . exon 101560 101621 . - . ID=Physo143621.6;Parent=Physo143621;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_145 . CDS 101698 101839 . - 0 ID=Physo143621;Parent=Physo143621;rank=5 scaffold_145 . exon 101698 101839 . - . ID=Physo143621.5;Parent=Physo143621;constitutive=1;ensembl_phase=2;rank=5 scaffold_145 . CDS 101922 102084 . - 0 ID=Physo143621;Parent=Physo143621;rank=4 scaffold_145 . exon 101922 102084 . - . ID=Physo143621.4;Parent=Physo143621;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_145 . CDS 102114 102376 . - 0 ID=Physo143621;Parent=Physo143621;rank=3 scaffold_145 . exon 102114 102376 . - . ID=Physo143621.3;Parent=Physo143621;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_145 . CDS 102515 104264 . - 0 ID=Physo143621;Parent=Physo143621;rank=2 scaffold_145 . CDS 104413 104449 . - 0 ID=Physo143621;Parent=Physo143621;rank=1 scaffold_145 . biological_region 102933 102934 0.999 - . logic_name=eponine scaffold_145 . biological_region 103384 103388 0.999 - . logic_name=eponine scaffold_145 . biological_region 103441 103442 0.999 + . logic_name=eponine scaffold_145 . biological_region 103913 103914 0.999 + . logic_name=eponine scaffold_145 . biological_region 104103 104106 0.999 + . logic_name=eponine scaffold_145 . biological_region 104707 104711 0.999 + . logic_name=eponine scaffold_145 . biological_region 104871 104875 0.999 - . logic_name=eponine scaffold_145 . biological_region 105517 105521 0.999 + . logic_name=eponine scaffold_145 . biological_region 105576 105580 0.999 - . logic_name=eponine scaffold_145 . biological_region 105602 105605 0.999 - . logic_name=eponine scaffold_145 . biological_region 105658 105661 0.999 + . logic_name=eponine scaffold_145 . biological_region 108223 108226 0.999 - . logic_name=eponine scaffold_145 . biological_region 109709 109711 0.999 - . logic_name=eponine scaffold_145 . biological_region 109901 109904 0.999 + . logic_name=eponine scaffold_145 . biological_region 109910 109912 0.999 - . logic_name=eponine scaffold_145 . repeat_region 110574 110581 . ? . description=dust scaffold_145 . exon 102515 104264 . - . ID=Physo143621.2;Parent=Physo143621;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_145 . exon 104413 104449 . - . ID=Physo143621.1;Parent=Physo143621;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 ensembl protein_coding_gene 104712 106483 . + . ID=Physo143622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450028;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 104712 106483 . + . ID=Physo143622;Parent=Physo143622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . exon 104712 106365 . + . ID=Physo143622.1;Parent=Physo143622;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_145 . CDS 104718 106365 . + 0 ID=Physo143622;Parent=Physo143622;rank=1 scaffold_145 . CDS 106440 106483 . + 0 ID=Physo143622;Parent=Physo143622;rank=2 scaffold_145 . exon 106440 106483 . + . ID=Physo143622.2;Parent=Physo143622;constitutive=1;ensembl_phase=1;rank=2 scaffold_145 ensembl protein_coding_gene 106586 108860 . - . ID=Physo143623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450029;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 106586 108860 . - . ID=Physo143623;Parent=Physo143623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 106586 107106 . - 0 ID=Physo143623;Parent=Physo143623;rank=5 scaffold_145 . exon 106586 107106 . - . ID=Physo143623.5;Parent=Physo143623;constitutive=1;ensembl_phase=1;rank=5 scaffold_145 . CDS 107185 107378 . - 0 ID=Physo143623;Parent=Physo143623;rank=4 scaffold_145 . exon 107185 107378 . - . ID=Physo143623.4;Parent=Physo143623;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_145 . CDS 107451 107524 . - 0 ID=Physo143623;Parent=Physo143623;rank=3 scaffold_145 . exon 107451 107524 . - . ID=Physo143623.3;Parent=Physo143623;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_145 . CDS 107652 108500 . - 0 ID=Physo143623;Parent=Physo143623;rank=2 scaffold_145 . exon 107652 108500 . - . ID=Physo143623.2;Parent=Physo143623;constitutive=1;rank=2 scaffold_145 . CDS 108594 108860 . - 0 ID=Physo143623;Parent=Physo143623;rank=1 scaffold_145 . exon 108594 108860 . - . ID=Physo143623.1;Parent=Physo143623;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 109695 111789 . + . ID=Physo143624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450030;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 109695 111789 . + . ID=Physo143624;Parent=Physo143624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 109695 110321 . + 0 ID=Physo143624;Parent=Physo143624;rank=1 scaffold_145 . exon 109695 110321 . + . ID=Physo143624.1;Parent=Physo143624;constitutive=1;rank=1 scaffold_145 . CDS 110403 110552 . + 0 ID=Physo143624;Parent=Physo143624;rank=2 scaffold_145 . exon 110403 110552 . + . ID=Physo143624.2;Parent=Physo143624;constitutive=1;rank=2 scaffold_145 . CDS 110630 110672 . + 0 ID=Physo143624;Parent=Physo143624;rank=3 scaffold_145 . exon 110630 110672 . + . ID=Physo143624.3;Parent=Physo143624;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_145 . CDS 110748 110902 . + 0 ID=Physo143624;Parent=Physo143624;rank=4 scaffold_145 . exon 110748 110902 . + . ID=Physo143624.4;Parent=Physo143624;constitutive=1;ensembl_phase=1;rank=4 scaffold_145 . CDS 110974 111789 . + 0 ID=Physo143624;Parent=Physo143624;rank=5 scaffold_145 . exon 110974 111789 . + . ID=Physo143624.5;Parent=Physo143624;constitutive=1;rank=5 scaffold_145 ensembl protein_coding_gene 112575 114919 . - . ID=Physo143625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450031;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 112575 114919 . - . ID=Physo143625;Parent=Physo143625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 112575 112577 . - 0 ID=Physo143625;Parent=Physo143625;rank=4 scaffold_145 . exon 112575 112577 . - . ID=Physo143625.4;Parent=Physo143625;constitutive=1;rank=4 scaffold_145 . CDS 112684 113089 . - 0 ID=Physo143625;Parent=Physo143625;rank=3 scaffold_145 . exon 112684 113089 . - . ID=Physo143625.3;Parent=Physo143625;constitutive=1;ensembl_phase=2;rank=3 scaffold_145 . CDS 113163 113775 . - 0 ID=Physo143625;Parent=Physo143625;rank=2 scaffold_145 . exon 113163 113775 . - . ID=Physo143625.2;Parent=Physo143625;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_145 . CDS 113806 114919 . - 0 ID=Physo143625;Parent=Physo143625;rank=1 scaffold_145 . exon 113806 114919 . - . ID=Physo143625.1;Parent=Physo143625;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 ensembl protein_coding_gene 115883 116530 . + . ID=Physo143626;biotype=protein_coding;description=PsAvh294 [Source:UniProtKB/TrEMBL%3BAcc:E0W5N8];external_name=estExt_fgenesh1_pg.C_1450032;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 115883 116530 . + . ID=Physo143626;Parent=Physo143626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 115883 116530 . + 0 ID=Physo143626;Parent=Physo143626;rank=1 scaffold_145 . exon 115883 116530 . + . ID=Physo143626.1;Parent=Physo143626;constitutive=1;rank=1 scaffold_145 ensembl protein_coding_gene 117011 119411 . - . ID=Physo143627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450033;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 117011 119411 . - . ID=Physo143627;Parent=Physo143627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 117011 118782 . - 0 ID=Physo143627;Parent=Physo143627;rank=2 scaffold_145 . exon 117011 118782 . - . ID=Physo143627.2;Parent=Physo143627;constitutive=1;ensembl_phase=1;rank=2 scaffold_145 . CDS 119216 119411 . - 0 ID=Physo143627;Parent=Physo143627;rank=1 scaffold_145 . exon 119216 119411 . - . ID=Physo143627.1;Parent=Physo143627;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 . biological_region 123575 123579 0.999 + . logic_name=eponine scaffold_145 . repeat_region 124701 124798 . ? . description=trf scaffold_145 . repeat_region 124702 124806 . ? . description=trf scaffold_145 . biological_region 125396 125397 0.999 - . logic_name=eponine scaffold_145 . repeat_region 126420 126942 . ? . description=trf scaffold_145 . biological_region 126975 126978 0.999 + . logic_name=eponine scaffold_145 . repeat_region 127198 127273 . ? . description=trf scaffold_145 . repeat_region 127380 127521 . ? . description=trf scaffold_145 . repeat_region 127645 129080 . ? . description=dust scaffold_145 ensembl protein_coding_gene 123116 123736 . + . ID=Physo143628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450034;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 123116 123736 . + . ID=Physo143628;Parent=Physo143628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 123116 123140 . + 0 ID=Physo143628;Parent=Physo143628;rank=1 scaffold_145 . exon 123116 123140 . + . ID=Physo143628.1;Parent=Physo143628;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_145 . CDS 123196 123437 . + 0 ID=Physo143628;Parent=Physo143628;rank=2 scaffold_145 . exon 123196 123437 . + . ID=Physo143628.2;Parent=Physo143628;constitutive=1;ensembl_phase=1;rank=2 scaffold_145 . CDS 123467 123736 . + 0 ID=Physo143628;Parent=Physo143628;rank=3 scaffold_145 . exon 123467 123736 . + . ID=Physo143628.3;Parent=Physo143628;constitutive=1;rank=3 scaffold_145 ensembl protein_coding_gene 129530 130161 . + . ID=Physo143629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1450035;logic_name=jgi_physo1_1 scaffold_145 ensembl transcript 129530 130161 . + . ID=Physo143629;Parent=Physo143629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_145 . CDS 129530 129681 . + 0 ID=Physo143629;Parent=Physo143629;rank=1 scaffold_145 . exon 129530 129681 . + . ID=Physo143629.1;Parent=Physo143629;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_145 . CDS 129815 129996 . + 0 ID=Physo143629;Parent=Physo143629;rank=2 scaffold_145 . exon 129815 129996 . + . ID=Physo143629.2;Parent=Physo143629;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_145 . CDS 130118 130161 . + 0 ID=Physo143629;Parent=Physo143629;rank=3 scaffold_145 . exon 130118 130161 . + . ID=Physo143629.3;Parent=Physo143629;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_143 1 135339 scaffold_143 . repeat_region 6 64 . ? . description=dust scaffold_143 . repeat_region 14 39 . ? . description=trf scaffold_143 . biological_region 438 438 0.999 + . logic_name=eponine scaffold_143 . repeat_region 3447 3533 . ? . description=trf scaffold_143 . repeat_region 3466 3654 . ? . description=trf scaffold_143 . repeat_region 3538 3600 . ? . description=trf scaffold_143 . repeat_region 3538 3610 . ? . description=trf scaffold_143 . biological_region 5019 5019 0.999 - . logic_name=eponine scaffold_143 . repeat_region 5383 5441 . ? . description=dust scaffold_143 . repeat_region 5417 5442 . ? . description=trf scaffold_143 . repeat_region 6391 6429 . ? . description=trf scaffold_143 . biological_region 6973 6974 0.999 - . logic_name=eponine scaffold_143 . biological_region 9087 9089 0.999 - . logic_name=eponine scaffold_143 . biological_region 9185 9189 0.999 - . logic_name=eponine scaffold_143 ensembl tRNA_gene 540 621 . - . ID=EPrPSOG00000000199;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_143 ensembl transcript 540 621 . - . ID=EPrPSOT00000000199;Parent=EPrPSOG00000000199;biotype=tRNA;logic_name=ncrna_eg scaffold_143 ensembl tRNA_gene 4835 4916 . + . ID=EPrPSOG00000000277;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_143 ensembl transcript 4835 4916 . + . ID=EPrPSOT00000000277;Parent=EPrPSOG00000000277;biotype=tRNA;logic_name=ncrna_eg scaffold_143 . exon 540 621 . - . ID=EPrPSOE00000000199;Parent=EPrPSOT00000000199;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_143 . exon 4835 4916 . + . ID=EPrPSOE00000000277;Parent=EPrPSOT00000000277;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_143 ensembl protein_coding_gene 5916 7051 . + . ID=Physo143545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430001;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 5916 7051 . + . ID=Physo143545;Parent=Physo143545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 5916 6232 . + 0 ID=Physo143545;Parent=Physo143545;rank=1 scaffold_143 . exon 5916 6232 . + . ID=Physo143545.1;Parent=Physo143545;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_143 . CDS 6344 6490 . + 0 ID=Physo143545;Parent=Physo143545;rank=2 scaffold_143 . exon 6344 6490 . + . ID=Physo143545.2;Parent=Physo143545;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_143 . CDS 6563 6664 . + 0 ID=Physo143545;Parent=Physo143545;rank=3 scaffold_143 . exon 6563 6664 . + . ID=Physo143545.3;Parent=Physo143545;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_143 . CDS 6748 6853 . + 0 ID=Physo143545;Parent=Physo143545;rank=4 scaffold_143 . exon 6748 6853 . + . ID=Physo143545.4;Parent=Physo143545;constitutive=1;ensembl_phase=2;rank=4 scaffold_143 . CDS 7010 7051 . + 0 ID=Physo143545;Parent=Physo143545;rank=5 scaffold_143 . exon 7010 7051 . + . ID=Physo143545.5;Parent=Physo143545;constitutive=1;rank=5 scaffold_143 ensembl protein_coding_gene 9001 10817 . + . ID=Physo143546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430002;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 9001 10817 . + . ID=Physo143546;Parent=Physo143546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 9001 9287 . + 0 ID=Physo143546;Parent=Physo143546;rank=1 scaffold_143 . exon 9001 9287 . + . ID=Physo143546.1;Parent=Physo143546;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_143 . CDS 9396 9820 . + 0 ID=Physo143546;Parent=Physo143546;rank=2 scaffold_143 . exon 9396 9820 . + . ID=Physo143546.2;Parent=Physo143546;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_143 . CDS 9956 10197 . + 0 ID=Physo143546;Parent=Physo143546;rank=3 scaffold_143 . CDS 10276 10481 . + 0 ID=Physo143546;Parent=Physo143546;rank=4 scaffold_143 . CDS 10547 10817 . + 0 ID=Physo143546;Parent=Physo143546;rank=5 scaffold_143 . exon 9956 10197 . + . ID=Physo143546.3;Parent=Physo143546;constitutive=1;ensembl_phase=1;rank=3 scaffold_143 . exon 10276 10481 . + . ID=Physo143546.4;Parent=Physo143546;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_143 . exon 10547 10817 . + . ID=Physo143546.5;Parent=Physo143546;constitutive=1;ensembl_phase=2;rank=5 scaffold_143 ensembl protein_coding_gene 13751 14910 . + . ID=Physo143547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430003;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 13751 14910 . + . ID=Physo143547;Parent=Physo143547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 13751 13773 . + 0 ID=Physo143547;Parent=Physo143547;rank=1 scaffold_143 . exon 13751 13773 . + . ID=Physo143547.1;Parent=Physo143547;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_143 . CDS 13859 13947 . + 0 ID=Physo143547;Parent=Physo143547;rank=2 scaffold_143 . exon 13859 13947 . + . ID=Physo143547.2;Parent=Physo143547;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_143 . CDS 14024 14688 . + 0 ID=Physo143547;Parent=Physo143547;rank=3 scaffold_143 . exon 14024 14910 . + . ID=Physo143547.3;Parent=Physo143547;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_143 ensembl protein_coding_gene 15221 17992 . + . ID=Physo143548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430004;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 15221 17992 . + . ID=Physo143548;Parent=Physo143548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 15221 15306 . + 0 ID=Physo143548;Parent=Physo143548;rank=1 scaffold_143 . exon 15221 15306 . + . ID=Physo143548.1;Parent=Physo143548;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_143 . CDS 15356 16056 . + 0 ID=Physo143548;Parent=Physo143548;rank=2 scaffold_143 . exon 15356 16056 . + . ID=Physo143548.2;Parent=Physo143548;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_143 . CDS 16426 16426 . + 0 ID=Physo143548;Parent=Physo143548;rank=3 scaffold_143 . exon 16426 16426 . + . ID=Physo143548.3;Parent=Physo143548;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_143 . CDS 16975 17992 . + 0 ID=Physo143548;Parent=Physo143548;rank=4 scaffold_143 . exon 16975 17992 . + . ID=Physo143548.4;Parent=Physo143548;constitutive=1;ensembl_phase=2;rank=4 scaffold_143 ensembl protein_coding_gene 18139 19017 . - . ID=Physo143549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430005;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 18139 19017 . - . ID=Physo143549;Parent=Physo143549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 18139 18388 . - 0 ID=Physo143549;Parent=Physo143549;rank=2 scaffold_143 . exon 18139 18388 . - . ID=Physo143549.2;Parent=Physo143549;constitutive=1;ensembl_phase=2;rank=2 scaffold_143 . CDS 18458 19017 . - 0 ID=Physo143549;Parent=Physo143549;rank=1 scaffold_143 . exon 18458 19017 . - . ID=Physo143549.1;Parent=Physo143549;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_143 . biological_region 24945 24945 0.999 + . logic_name=eponine scaffold_143 . biological_region 24975 24978 0.999 - . logic_name=eponine scaffold_143 . repeat_region 26575 26759 . - . description=Polinton-1_PI scaffold_143 . repeat_region 26827 26991 . - . description=Polinton-1_PI scaffold_143 . repeat_region 27102 27114 . ? . description=dust scaffold_143 ensembl protein_coding_gene 23974 25200 . - . ID=Physo109564;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1430001;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 23974 25200 . - . ID=Physo109564;Parent=Physo109564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 23974 24062 . - 0 ID=Physo109564;Parent=Physo109564;rank=2 scaffold_143 . exon 23974 24062 . - . ID=Physo109564.2;Parent=Physo109564;constitutive=1;ensembl_phase=1;rank=2 scaffold_143 . CDS 24117 25200 . - 0 ID=Physo109564;Parent=Physo109564;rank=1 scaffold_143 . exon 24117 25200 . - . ID=Physo109564.1;Parent=Physo109564;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_143 ensembl protein_coding_gene 37178 37942 . + . ID=Physo143551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430007;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 37178 37942 . + . ID=Physo143551;Parent=Physo143551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 37178 37942 . + 0 ID=Physo143551;Parent=Physo143551;rank=1 scaffold_143 . exon 37178 37942 . + . ID=Physo143551.1;Parent=Physo143551;constitutive=1;rank=1 scaffold_143 . biological_region 44563 44564 0.999 - . logic_name=eponine scaffold_143 . repeat_region 52719 52729 . ? . description=dust scaffold_143 . repeat_region 53940 53947 . ? . description=dust scaffold_143 . repeat_region 57683 57771 . ? . description=trf scaffold_143 . repeat_region 57689 57783 . ? . description=dust scaffold_143 . biological_region 63599 63604 0.999 - . logic_name=eponine scaffold_143 . repeat_region 66837 66936 . - . description=Polinton-1_PI scaffold_143 ensembl protein_coding_gene 62716 63360 . - . ID=Physo143552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430008;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 62716 63360 . - . ID=Physo143552;Parent=Physo143552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 62716 63360 . - 0 ID=Physo143552;Parent=Physo143552;rank=1 scaffold_143 . exon 62716 63360 . - . ID=Physo143552.1;Parent=Physo143552;constitutive=1;rank=1 scaffold_143 ensembl protein_coding_gene 65678 67198 . - . ID=Physo143553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430009;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 65678 67198 . - . ID=Physo143553;Parent=Physo143553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 65678 67198 . - 0 ID=Physo143553;Parent=Physo143553;rank=1 scaffold_143 . exon 65678 67198 . - . ID=Physo143553.1;Parent=Physo143553;constitutive=1;rank=1 scaffold_143 . repeat_region 70990 73315 . + . description=GypsyPi-1c_I-int scaffold_143 . repeat_region 73615 73852 . + . description=GypsyPi-1c_I-int scaffold_143 . repeat_region 75112 75218 . ? . description=trf scaffold_143 . repeat_region 75166 75269 . ? . description=trf scaffold_143 . repeat_region 75328 75388 . ? . description=trf scaffold_143 ensembl protein_coding_gene 69663 73614 . + . ID=Physo143554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430010;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 69663 73614 . + . ID=Physo143554;Parent=Physo143554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 69663 70362 . + 0 ID=Physo143554;Parent=Physo143554;rank=1 scaffold_143 . exon 69663 70362 . + . ID=Physo143554.1;Parent=Physo143554;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_143 . CDS 70425 71250 . + 0 ID=Physo143554;Parent=Physo143554;rank=2 scaffold_143 . exon 70425 71250 . + . ID=Physo143554.2;Parent=Physo143554;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_143 . CDS 71451 72425 . + 0 ID=Physo143554;Parent=Physo143554;rank=3 scaffold_143 . exon 71451 72425 . + . ID=Physo143554.3;Parent=Physo143554;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_143 . CDS 72594 73367 . + 0 ID=Physo143554;Parent=Physo143554;rank=4 scaffold_143 . exon 72594 73367 . + . ID=Physo143554.4;Parent=Physo143554;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_143 . CDS 73400 73567 . + 0 ID=Physo143554;Parent=Physo143554;rank=5 scaffold_143 . exon 73400 73567 . + . ID=Physo143554.5;Parent=Physo143554;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_143 . CDS 73608 73614 . + 0 ID=Physo143554;Parent=Physo143554;rank=6 scaffold_143 . exon 73608 73614 . + . ID=Physo143554.6;Parent=Physo143554;constitutive=1;ensembl_phase=2;rank=6 scaffold_143 . biological_region 78154 78156 0.999 - . logic_name=eponine scaffold_143 . biological_region 78680 78681 0.999 + . logic_name=eponine scaffold_143 . biological_region 78718 78719 0.999 + . logic_name=eponine scaffold_143 . biological_region 78740 78747 0.999 + . logic_name=eponine scaffold_143 . repeat_region 79562 79569 . ? . description=dust scaffold_143 . biological_region 81745 81750 0.999 + . logic_name=eponine scaffold_143 . biological_region 81758 81760 0.999 - . logic_name=eponine scaffold_143 . biological_region 81762 81771 0.999 + . logic_name=eponine scaffold_143 . biological_region 81811 81818 0.999 + . logic_name=eponine scaffold_143 . biological_region 81845 81850 0.999 - . logic_name=eponine scaffold_143 . biological_region 81899 81902 0.999 - . logic_name=eponine scaffold_143 . biological_region 82133 82139 0.999 + . logic_name=eponine scaffold_143 . biological_region 82167 82172 0.999 + . logic_name=eponine scaffold_143 . repeat_region 85820 85827 . ? . description=dust scaffold_143 ensembl protein_coding_gene 80594 82501 . + . ID=Physo123918;biotype=protein_coding;external_name=estExt_Genewise1.C_1430012;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 80594 82501 . + . ID=Physo123918;Parent=Physo123918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . exon 80594 81694 . + . ID=Physo123918.1;Parent=Physo123918;constitutive=1;ensembl_phase=-1;rank=1 scaffold_143 . CDS 80633 81694 . + 0 ID=Physo123918;Parent=Physo123918;rank=1 scaffold_143 . CDS 81743 82498 . + 0 ID=Physo123918;Parent=Physo123918;rank=2 scaffold_143 . exon 81743 82501 . + . ID=Physo123918.2;Parent=Physo123918;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_143 ensembl protein_coding_gene 77814 79068 . + . ID=Physo143555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430011;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 77814 79068 . + . ID=Physo143555;Parent=Physo143555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 77814 78425 . + 0 ID=Physo143555;Parent=Physo143555;rank=1 scaffold_143 . exon 77814 78425 . + . ID=Physo143555.1;Parent=Physo143555;constitutive=1;rank=1 scaffold_143 . CDS 78489 78829 . + 0 ID=Physo143555;Parent=Physo143555;rank=2 scaffold_143 . exon 78489 78829 . + . ID=Physo143555.2;Parent=Physo143555;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_143 . CDS 78933 79068 . + 0 ID=Physo143555;Parent=Physo143555;rank=3 scaffold_143 . exon 78933 79068 . + . ID=Physo143555.3;Parent=Physo143555;constitutive=1;ensembl_phase=2;rank=3 scaffold_143 ensembl protein_coding_gene 86633 87736 . + . ID=Physo143557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430013;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 86633 87736 . + . ID=Physo143557;Parent=Physo143557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 86633 87736 . + 0 ID=Physo143557;Parent=Physo143557;rank=1 scaffold_143 . exon 86633 87736 . + . ID=Physo143557.1;Parent=Physo143557;constitutive=1;rank=1 scaffold_143 ensembl protein_coding_gene 88391 92009 . - . ID=Physo143558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430014;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 88391 92009 . - . ID=Physo143558;Parent=Physo143558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 88391 89100 . - 0 ID=Physo143558;Parent=Physo143558;rank=4 scaffold_143 . exon 88391 89100 . - . ID=Physo143558.4;Parent=Physo143558;constitutive=1;ensembl_phase=1;rank=4 scaffold_143 . CDS 89175 89701 . - 0 ID=Physo143558;Parent=Physo143558;rank=3 scaffold_143 . exon 89175 89701 . - . ID=Physo143558.3;Parent=Physo143558;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_143 . CDS 89805 90591 . - 0 ID=Physo143558;Parent=Physo143558;rank=2 scaffold_143 . exon 89805 90591 . - . ID=Physo143558.2;Parent=Physo143558;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_143 . CDS 91031 92009 . - 0 ID=Physo143558;Parent=Physo143558;rank=1 scaffold_143 . exon 91031 92009 . - . ID=Physo143558.1;Parent=Physo143558;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_143 ensembl protein_coding_gene 92235 94533 . + . ID=Physo143559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430015;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 92235 94533 . + . ID=Physo143559;Parent=Physo143559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 92235 92245 . + 0 ID=Physo143559;Parent=Physo143559;rank=1 scaffold_143 . exon 92235 92245 . + . ID=Physo143559.1;Parent=Physo143559;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_143 . CDS 92307 92710 . + 0 ID=Physo143559;Parent=Physo143559;rank=2 scaffold_143 . exon 92307 92710 . + . ID=Physo143559.2;Parent=Physo143559;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_143 . CDS 92862 93270 . + 0 ID=Physo143559;Parent=Physo143559;rank=3 scaffold_143 . exon 92862 93270 . + . ID=Physo143559.3;Parent=Physo143559;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_143 . CDS 93726 94533 . + 0 ID=Physo143559;Parent=Physo143559;rank=4 scaffold_143 . exon 93726 94533 . + . ID=Physo143559.4;Parent=Physo143559;constitutive=1;ensembl_phase=2;rank=4 scaffold_143 ensembl protein_coding_gene 96678 97270 . + . ID=Physo143560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430016;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 96678 97270 . + . ID=Physo143560;Parent=Physo143560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 96678 96695 . + 0 ID=Physo143560;Parent=Physo143560;rank=1 scaffold_143 . exon 96678 96695 . + . ID=Physo143560.1;Parent=Physo143560;constitutive=1;rank=1 scaffold_143 . CDS 96764 97270 . + 0 ID=Physo143560;Parent=Physo143560;rank=2 scaffold_143 . biological_region 97101 97106 0.999 - . logic_name=eponine scaffold_143 . repeat_region 103623 103634 . ? . description=dust scaffold_143 . exon 96764 97270 . + . ID=Physo143560.2;Parent=Physo143560;constitutive=1;rank=2 scaffold_143 ensembl protein_coding_gene 99874 100594 . - . ID=Physo143561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430017;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 99874 100594 . - . ID=Physo143561;Parent=Physo143561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 99874 99927 . - 0 ID=Physo143561;Parent=Physo143561;rank=2 scaffold_143 . exon 99874 99927 . - . ID=Physo143561.2;Parent=Physo143561;constitutive=1;rank=2 scaffold_143 . CDS 99968 100594 . - 0 ID=Physo143561;Parent=Physo143561;rank=1 scaffold_143 . exon 99968 100594 . - . ID=Physo143561.1;Parent=Physo143561;constitutive=1;rank=1 scaffold_143 ensembl protein_coding_gene 101304 103467 . - . ID=Physo143562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430018;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 101304 103467 . - . ID=Physo143562;Parent=Physo143562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 101304 102859 . - 0 ID=Physo143562;Parent=Physo143562;rank=2 scaffold_143 . exon 101304 102859 . - . ID=Physo143562.2;Parent=Physo143562;constitutive=1;ensembl_phase=1;rank=2 scaffold_143 . CDS 102933 103467 . - 0 ID=Physo143562;Parent=Physo143562;rank=1 scaffold_143 . exon 102933 103467 . - . ID=Physo143562.1;Parent=Physo143562;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_143 ensembl protein_coding_gene 106108 107112 . + . ID=Physo143563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430019;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 106108 107112 . + . ID=Physo143563;Parent=Physo143563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 106108 106252 . + 0 ID=Physo143563;Parent=Physo143563;rank=1 scaffold_143 . exon 106108 106252 . + . ID=Physo143563.1;Parent=Physo143563;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_143 . CDS 106442 106525 . + 0 ID=Physo143563;Parent=Physo143563;rank=2 scaffold_143 . CDS 106619 106743 . + 0 ID=Physo143563;Parent=Physo143563;rank=3 scaffold_143 . CDS 106870 107112 . + 0 ID=Physo143563;Parent=Physo143563;rank=4 scaffold_143 . repeat_region 107734 107910 . ? . description=trf scaffold_143 . repeat_region 107735 107910 . ? . description=trf scaffold_143 . repeat_region 107759 107904 . ? . description=trf scaffold_143 . exon 106442 106525 . + . ID=Physo143563.2;Parent=Physo143563;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_143 . exon 106619 106743 . + . ID=Physo143563.3;Parent=Physo143563;constitutive=1;ensembl_phase=1;rank=3 scaffold_143 . exon 106870 107112 . + . ID=Physo143563.4;Parent=Physo143563;constitutive=1;rank=4 scaffold_143 ensembl protein_coding_gene 110126 111571 . + . ID=Physo143564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430020;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 110126 111571 . + . ID=Physo143564;Parent=Physo143564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 110126 111571 . + 0 ID=Physo143564;Parent=Physo143564;rank=1 scaffold_143 . exon 110126 111571 . + . ID=Physo143564.1;Parent=Physo143564;constitutive=1;rank=1 scaffold_143 ensembl protein_coding_gene 111849 114249 . + . ID=Physo143565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1430021;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 111849 114249 . + . ID=Physo143565;Parent=Physo143565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . CDS 111849 112165 . + 0 ID=Physo143565;Parent=Physo143565;rank=1 scaffold_143 . exon 111849 112165 . + . ID=Physo143565.1;Parent=Physo143565;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_143 . CDS 112262 113287 . + 0 ID=Physo143565;Parent=Physo143565;rank=2 scaffold_143 . exon 112262 113287 . + . ID=Physo143565.2;Parent=Physo143565;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_143 . CDS 113481 113772 . + 0 ID=Physo143565;Parent=Physo143565;rank=3 scaffold_143 . exon 113481 113772 . + . ID=Physo143565.3;Parent=Physo143565;constitutive=1;ensembl_phase=2;rank=3 scaffold_143 . CDS 114043 114249 . + 0 ID=Physo143565;Parent=Physo143565;rank=4 scaffold_143 . exon 114043 114249 . + . ID=Physo143565.4;Parent=Physo143565;constitutive=1;rank=4 scaffold_143 . biological_region 119004 119009 0.999 - . logic_name=eponine scaffold_143 . biological_region 119037 119043 0.999 - . logic_name=eponine scaffold_143 . biological_region 119274 119277 0.999 + . logic_name=eponine scaffold_143 . biological_region 119326 119331 0.999 + . logic_name=eponine scaffold_143 . biological_region 119358 119365 0.999 - . logic_name=eponine scaffold_143 . biological_region 119405 119414 0.999 - . logic_name=eponine scaffold_143 . biological_region 119416 119418 0.999 + . logic_name=eponine scaffold_143 . biological_region 119426 119431 0.999 - . logic_name=eponine scaffold_143 . repeat_region 121301 121312 . ? . description=dust scaffold_143 . repeat_region 121815 122115 . ? . description=dust scaffold_143 . repeat_region 123794 125978 . ? . description=dust scaffold_143 ensembl protein_coding_gene 118674 120581 . - . ID=Physo123922;biotype=protein_coding;external_name=estExt_Genewise1.C_1430016;logic_name=jgi_physo1_1 scaffold_143 ensembl transcript 118674 120581 . - . ID=Physo123922;Parent=Physo123922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_143 . exon 118674 119432 . - . ID=Physo123922.2;Parent=Physo123922;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_143 . CDS 118677 119432 . - 0 ID=Physo123922;Parent=Physo123922;rank=2 scaffold_143 . CDS 119481 120542 . - 0 ID=Physo123922;Parent=Physo123922;rank=1 scaffold_143 . exon 119481 120581 . - . ID=Physo123922.1;Parent=Physo123922;constitutive=1;ensembl_phase=-1;rank=1 scaffold_143 . repeat_region 127873 127900 . ? . description=trf scaffold_143 . repeat_region 129239 129272 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_142 1 135508 scaffold_142 . biological_region 2017 2021 0.999 + . logic_name=eponine scaffold_142 ensembl tRNA_gene 315 386 . - . ID=EPrPSOG00000000267;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_142 ensembl transcript 315 386 . - . ID=EPrPSOT00000000267;Parent=EPrPSOG00000000267;biotype=tRNA;logic_name=ncrna_eg scaffold_142 . exon 315 386 . - . ID=EPrPSOE00000000267;Parent=EPrPSOT00000000267;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 1781 3340 . - . ID=Physo143510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420001;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 1781 3340 . - . ID=Physo143510;Parent=Physo143510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . exon 1781 3015 . - . ID=Physo143510.2;Parent=Physo143510;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_142 . CDS 1822 3015 . - 0 ID=Physo143510;Parent=Physo143510;rank=2 scaffold_142 . CDS 3089 3340 . - 0 ID=Physo143510;Parent=Physo143510;rank=1 scaffold_142 . exon 3089 3340 . - . ID=Physo143510.1;Parent=Physo143510;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 8215 11573 . + . ID=Physo143511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420002;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 8215 11573 . + . ID=Physo143511;Parent=Physo143511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 8215 10502 . + 0 ID=Physo143511;Parent=Physo143511;rank=1 scaffold_142 . exon 8215 10502 . + . ID=Physo143511.1;Parent=Physo143511;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_142 . CDS 10558 10571 . + 0 ID=Physo143511;Parent=Physo143511;rank=2 scaffold_142 . CDS 10618 11573 . + 0 ID=Physo143511;Parent=Physo143511;rank=3 scaffold_142 . repeat_region 10112 10148 . ? . description=trf scaffold_142 . repeat_region 11795 11802 . ? . description=dust scaffold_142 . repeat_region 18045 18087 . ? . description=trf scaffold_142 . exon 10558 10571 . + . ID=Physo143511.2;Parent=Physo143511;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_142 . exon 10618 11573 . + . ID=Physo143511.3;Parent=Physo143511;constitutive=1;ensembl_phase=1;rank=3 scaffold_142 ensembl protein_coding_gene 12660 16826 . + . ID=Physo143512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420003;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 12660 16826 . + . ID=Physo143512;Parent=Physo143512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 12660 13089 . + 0 ID=Physo143512;Parent=Physo143512;rank=1 scaffold_142 . exon 12660 13089 . + . ID=Physo143512.1;Parent=Physo143512;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 . CDS 13205 13268 . + 0 ID=Physo143512;Parent=Physo143512;rank=2 scaffold_142 . exon 13205 13268 . + . ID=Physo143512.2;Parent=Physo143512;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_142 . CDS 13476 14516 . + 0 ID=Physo143512;Parent=Physo143512;rank=3 scaffold_142 . exon 13476 14516 . + . ID=Physo143512.3;Parent=Physo143512;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_142 . CDS 14911 15078 . + 0 ID=Physo143512;Parent=Physo143512;rank=4 scaffold_142 . exon 14911 15078 . + . ID=Physo143512.4;Parent=Physo143512;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_142 . CDS 15106 15768 . + 0 ID=Physo143512;Parent=Physo143512;rank=5 scaffold_142 . exon 15106 15768 . + . ID=Physo143512.5;Parent=Physo143512;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_142 . CDS 15947 16366 . + 0 ID=Physo143512;Parent=Physo143512;rank=6 scaffold_142 . exon 15947 16366 . + . ID=Physo143512.6;Parent=Physo143512;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_142 . CDS 16553 16682 . + 0 ID=Physo143512;Parent=Physo143512;rank=7 scaffold_142 . exon 16553 16682 . + . ID=Physo143512.7;Parent=Physo143512;constitutive=1;ensembl_phase=2;rank=7 scaffold_142 . CDS 16716 16826 . + 0 ID=Physo143512;Parent=Physo143512;rank=8 scaffold_142 . exon 16716 16826 . + . ID=Physo143512.8;Parent=Physo143512;constitutive=1;rank=8 scaffold_142 ensembl protein_coding_gene 17770 18525 . - . ID=Physo143513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420004;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 17770 18525 . - . ID=Physo143513;Parent=Physo143513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . exon 17770 18093 . - . ID=Physo143513.3;Parent=Physo143513;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_142 . CDS 17783 18093 . - 0 ID=Physo143513;Parent=Physo143513;rank=3 scaffold_142 . CDS 18253 18273 . - 0 ID=Physo143513;Parent=Physo143513;rank=2 scaffold_142 . exon 18253 18273 . - . ID=Physo143513.2;Parent=Physo143513;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_142 . CDS 18474 18525 . - 0 ID=Physo143513;Parent=Physo143513;rank=1 scaffold_142 . exon 18474 18525 . - . ID=Physo143513.1;Parent=Physo143513;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 . repeat_region 32551 32598 . ? . description=trf scaffold_142 . biological_region 32622 32625 0.999 - . logic_name=eponine scaffold_142 . biological_region 32676 32679 0.999 - . logic_name=eponine scaffold_142 . repeat_region 35137 35144 . ? . description=dust scaffold_142 . repeat_region 35512 35554 . ? . description=trf scaffold_142 . biological_region 36533 36535 0.999 - . logic_name=eponine scaffold_142 . biological_region 36586 36592 0.999 + . logic_name=eponine scaffold_142 . biological_region 36605 36617 0.999 + . logic_name=eponine scaffold_142 . biological_region 36633 36634 0.999 - . logic_name=eponine scaffold_142 . biological_region 36663 36665 0.999 + . logic_name=eponine scaffold_142 . biological_region 36877 36878 0.999 + . logic_name=eponine scaffold_142 . biological_region 37118 37122 0.999 + . logic_name=eponine scaffold_142 . biological_region 37210 37213 0.999 - . logic_name=eponine scaffold_142 . biological_region 37459 37464 0.999 + . logic_name=eponine scaffold_142 . biological_region 37481 37486 0.999 + . logic_name=eponine scaffold_142 . biological_region 37524 37526 0.999 - . logic_name=eponine scaffold_142 . biological_region 37545 37549 0.999 + . logic_name=eponine scaffold_142 . biological_region 37576 37582 0.999 + . logic_name=eponine scaffold_142 . biological_region 37592 37596 0.999 - . logic_name=eponine scaffold_142 . biological_region 37594 37594 0.999 + . logic_name=eponine scaffold_142 . biological_region 37607 37620 0.999 - . logic_name=eponine scaffold_142 . biological_region 37615 37621 0.999 + . logic_name=eponine scaffold_142 . biological_region 37670 37673 0.999 - . logic_name=eponine scaffold_142 ensembl protein_coding_gene 38328 39485 . - . ID=Physo109562;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1420001;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 38328 39485 . - . ID=Physo109562;Parent=Physo109562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 38328 39308 . - 0 ID=Physo109562;Parent=Physo109562;rank=2 scaffold_142 . exon 38328 39308 . - . ID=Physo109562.2;Parent=Physo109562;constitutive=1;rank=2 scaffold_142 . CDS 39399 39485 . - 0 ID=Physo109562;Parent=Physo109562;rank=1 scaffold_142 ensembl protein_coding_gene 35250 37194 . - . ID=Physo158774;biotype=protein_coding;external_name=C_scaffold_142000001;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 35250 37194 . - . ID=Physo158774;Parent=Physo158774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 35250 37051 . - 0 ID=Physo158774;Parent=Physo158774;rank=2 scaffold_142 . exon 35250 37051 . - . ID=Physo158774.2;Parent=Physo158774;constitutive=1;ensembl_phase=1;rank=2 scaffold_142 . CDS 37131 37194 . - 0 ID=Physo158774;Parent=Physo158774;rank=1 scaffold_142 . exon 37131 37194 . - . ID=Physo158774.1;Parent=Physo158774;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 ensembl protein_coding_gene 37350 38182 . + . ID=Physo158775;biotype=protein_coding;external_name=C_scaffold_142000002;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 37350 38182 . + . ID=Physo158775;Parent=Physo158775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 37350 37877 . + 0 ID=Physo158775;Parent=Physo158775;rank=1 scaffold_142 . exon 37350 37877 . + . ID=Physo158775.1;Parent=Physo158775;constitutive=1;rank=1 scaffold_142 . CDS 37952 38182 . + 0 ID=Physo158775;Parent=Physo158775;rank=2 scaffold_142 . exon 37952 38182 . + . ID=Physo158775.2;Parent=Physo158775;constitutive=1;rank=2 scaffold_142 . exon 39399 39485 . - . ID=Physo109562.1;Parent=Physo109562;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 40197 41065 . - . ID=Physo109563;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1420002;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 40197 41065 . - . ID=Physo109563;Parent=Physo109563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . exon 40197 40514 . - . ID=Physo109563.2;Parent=Physo109563;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_142 . CDS 40326 40514 . - 0 ID=Physo109563;Parent=Physo109563;rank=2 scaffold_142 . CDS 40658 41041 . - 0 ID=Physo109563;Parent=Physo109563;rank=1 scaffold_142 . exon 40658 41065 . - . ID=Physo109563.1;Parent=Physo109563;constitutive=1;ensembl_phase=-1;rank=1 scaffold_142 ensembl protein_coding_gene 41518 42774 . - . ID=Physo143518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420009;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 41518 42774 . - . ID=Physo143518;Parent=Physo143518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 41518 42774 . - 0 ID=Physo143518;Parent=Physo143518;rank=1 scaffold_142 . exon 41518 42774 . - . ID=Physo143518.1;Parent=Physo143518;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 43484 47301 . + . ID=Physo143519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420010;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 43484 47301 . + . ID=Physo143519;Parent=Physo143519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 43484 44844 . + 0 ID=Physo143519;Parent=Physo143519;rank=1 scaffold_142 . exon 43484 44844 . + . ID=Physo143519.1;Parent=Physo143519;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_142 . CDS 45747 46038 . + 0 ID=Physo143519;Parent=Physo143519;rank=2 scaffold_142 . exon 45747 46038 . + . ID=Physo143519.2;Parent=Physo143519;constitutive=1;ensembl_phase=2;rank=2 scaffold_142 . CDS 46117 47301 . + 0 ID=Physo143519;Parent=Physo143519;rank=3 scaffold_142 . exon 46117 47301 . + . ID=Physo143519.3;Parent=Physo143519;constitutive=1;rank=3 scaffold_142 ensembl protein_coding_gene 48249 49555 . + . ID=Physo143520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420011;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 48249 49555 . + . ID=Physo143520;Parent=Physo143520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 48249 49177 . + 0 ID=Physo143520;Parent=Physo143520;rank=1 scaffold_142 . exon 48249 49177 . + . ID=Physo143520.1;Parent=Physo143520;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_142 . CDS 49201 49555 . + 0 ID=Physo143520;Parent=Physo143520;rank=2 scaffold_142 . repeat_region 49624 49672 . ? . description=trf scaffold_142 . repeat_region 52890 52909 . ? . description=trf scaffold_142 . biological_region 56469 56471 0.999 + . logic_name=eponine scaffold_142 . exon 49201 49555 . + . ID=Physo143520.2;Parent=Physo143520;constitutive=1;ensembl_phase=2;rank=2 scaffold_142 ensembl protein_coding_gene 50884 52578 . + . ID=Physo143521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420012;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 50884 52578 . + . ID=Physo143521;Parent=Physo143521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 50884 52578 . + 0 ID=Physo143521;Parent=Physo143521;rank=1 scaffold_142 . exon 50884 52578 . + . ID=Physo143521.1;Parent=Physo143521;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 53930 54349 . - . ID=Physo143522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420013;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 53930 54349 . - . ID=Physo143522;Parent=Physo143522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 53930 54349 . - 0 ID=Physo143522;Parent=Physo143522;rank=1 scaffold_142 . exon 53930 54349 . - . ID=Physo143522.1;Parent=Physo143522;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 54481 55584 . + . ID=Physo143523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420014;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 54481 55584 . + . ID=Physo143523;Parent=Physo143523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 54481 55584 . + 0 ID=Physo143523;Parent=Physo143523;rank=1 scaffold_142 . exon 54481 55584 . + . ID=Physo143523.1;Parent=Physo143523;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 55736 57056 . - . ID=Physo143524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420015;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 55736 57056 . - . ID=Physo143524;Parent=Physo143524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 55736 55852 . - 0 ID=Physo143524;Parent=Physo143524;rank=2 scaffold_142 . exon 55736 55852 . - . ID=Physo143524.2;Parent=Physo143524;constitutive=1;rank=2 scaffold_142 . CDS 55929 57056 . - 0 ID=Physo143524;Parent=Physo143524;rank=1 scaffold_142 . exon 55929 57056 . - . ID=Physo143524.1;Parent=Physo143524;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 57250 59290 . + . ID=Physo143525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420016;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 57250 59290 . + . ID=Physo143525;Parent=Physo143525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . exon 57250 59290 . + . ID=Physo143525.1;Parent=Physo143525;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_142 . CDS 57263 59173 . + 0 ID=Physo143525;Parent=Physo143525;rank=1 scaffold_142 . repeat_region 63124 63132 . ? . description=dust scaffold_142 . repeat_region 66978 67037 . ? . description=dust scaffold_142 . repeat_region 66979 67129 . + . description=(TCG)n scaffold_142 ensembl protein_coding_gene 59508 59705 . - . ID=Physo123887;biotype=protein_coding;external_name=estExt_Genewise1.C_1420017;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 59508 59705 . - . ID=Physo123887;Parent=Physo123887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 59508 59705 . - 0 ID=Physo123887;Parent=Physo123887;rank=1 scaffold_142 . exon 59508 59705 . - . ID=Physo123887.1;Parent=Physo123887;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 59931 61551 . - . ID=Physo143526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420017;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 59931 61551 . - . ID=Physo143526;Parent=Physo143526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 59931 60443 . - 0 ID=Physo143526;Parent=Physo143526;rank=3 scaffold_142 . exon 59931 60443 . - . ID=Physo143526.3;Parent=Physo143526;constitutive=1;rank=3 scaffold_142 . CDS 60526 60579 . - 0 ID=Physo143526;Parent=Physo143526;rank=2 scaffold_142 . exon 60526 60579 . - . ID=Physo143526.2;Parent=Physo143526;constitutive=1;rank=2 scaffold_142 . CDS 60658 61551 . - 0 ID=Physo143526;Parent=Physo143526;rank=1 scaffold_142 . exon 60658 61551 . - . ID=Physo143526.1;Parent=Physo143526;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 65076 68350 . - . ID=Physo143527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420018;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 65076 68350 . - . ID=Physo143527;Parent=Physo143527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 65076 65222 . - 0 ID=Physo143527;Parent=Physo143527;rank=8 scaffold_142 . exon 65076 65222 . - . ID=Physo143527.8;Parent=Physo143527;constitutive=1;rank=8 scaffold_142 . CDS 65393 65467 . - 0 ID=Physo143527;Parent=Physo143527;rank=7 scaffold_142 . exon 65393 65467 . - . ID=Physo143527.7;Parent=Physo143527;constitutive=1;rank=7 scaffold_142 . CDS 65540 65658 . - 0 ID=Physo143527;Parent=Physo143527;rank=6 scaffold_142 . exon 65540 65658 . - . ID=Physo143527.6;Parent=Physo143527;constitutive=1;ensembl_phase=1;rank=6 scaffold_142 . CDS 65845 66175 . - 0 ID=Physo143527;Parent=Physo143527;rank=5 scaffold_142 . exon 65845 66175 . - . ID=Physo143527.5;Parent=Physo143527;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_142 . CDS 66233 66385 . - 0 ID=Physo143527;Parent=Physo143527;rank=4 scaffold_142 . exon 66233 66385 . - . ID=Physo143527.4;Parent=Physo143527;constitutive=1;rank=4 scaffold_142 . CDS 66791 67474 . - 0 ID=Physo143527;Parent=Physo143527;rank=3 scaffold_142 . exon 66791 67474 . - . ID=Physo143527.3;Parent=Physo143527;constitutive=1;rank=3 scaffold_142 . CDS 67507 68199 . - 0 ID=Physo143527;Parent=Physo143527;rank=2 scaffold_142 . exon 67507 68199 . - . ID=Physo143527.2;Parent=Physo143527;constitutive=1;rank=2 scaffold_142 . CDS 68306 68350 . - 0 ID=Physo143527;Parent=Physo143527;rank=1 scaffold_142 . biological_region 68052 68053 0.999 - . logic_name=eponine scaffold_142 . biological_region 71330 71331 0.999 + . logic_name=eponine scaffold_142 . biological_region 71667 71670 0.999 - . logic_name=eponine scaffold_142 . biological_region 71747 71747 0.999 - . logic_name=eponine scaffold_142 . repeat_region 72043 72092 . ? . description=trf scaffold_142 . biological_region 72212 72213 0.999 - . logic_name=eponine scaffold_142 . biological_region 72426 72428 0.999 - . logic_name=eponine scaffold_142 . biological_region 72471 72473 0.999 - . logic_name=eponine scaffold_142 . biological_region 72712 72716 0.999 - . logic_name=eponine scaffold_142 . biological_region 72842 72844 0.999 + . logic_name=eponine scaffold_142 . biological_region 74113 74117 0.999 - . logic_name=eponine scaffold_142 . repeat_region 74668 74690 . ? . description=trf scaffold_142 . biological_region 75566 75567 0.999 + . logic_name=eponine scaffold_142 . biological_region 76792 76795 0.999 - . logic_name=eponine scaffold_142 ensembl protein_coding_gene 69993 70418 . - . ID=Physo123889;biotype=protein_coding;external_name=estExt_Genewise1.C_1420019;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 69993 70418 . - . ID=Physo123889;Parent=Physo123889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 69993 70205 . - 0 ID=Physo123889;Parent=Physo123889;rank=1 scaffold_142 . exon 69993 70418 . - . ID=Physo123889.1;Parent=Physo123889;constitutive=1;ensembl_phase=-1;rank=1 scaffold_142 . exon 68306 68350 . - . ID=Physo143527.1;Parent=Physo143527;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 71696 75347 . - . ID=Physo143528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420019;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 71696 75347 . - . ID=Physo143528;Parent=Physo143528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 71696 72784 . - 0 ID=Physo143528;Parent=Physo143528;rank=4 scaffold_142 . exon 71696 72784 . - . ID=Physo143528.4;Parent=Physo143528;constitutive=1;rank=4 scaffold_142 . CDS 72859 73939 . - 0 ID=Physo143528;Parent=Physo143528;rank=3 scaffold_142 . exon 72859 73939 . - . ID=Physo143528.3;Parent=Physo143528;constitutive=1;ensembl_phase=2;rank=3 scaffold_142 . CDS 74053 74774 . - 0 ID=Physo143528;Parent=Physo143528;rank=2 scaffold_142 . exon 74053 74774 . - . ID=Physo143528.2;Parent=Physo143528;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_142 . CDS 74904 75347 . - 0 ID=Physo143528;Parent=Physo143528;rank=1 scaffold_142 . exon 74904 75347 . - . ID=Physo143528.1;Parent=Physo143528;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 76801 78716 . + . ID=Physo143529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420020;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 76801 78716 . + . ID=Physo143529;Parent=Physo143529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 76801 77017 . + 0 ID=Physo143529;Parent=Physo143529;rank=1 scaffold_142 . exon 76801 77017 . + . ID=Physo143529.1;Parent=Physo143529;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 . CDS 77197 77862 . + 0 ID=Physo143529;Parent=Physo143529;rank=2 scaffold_142 . exon 77197 77862 . + . ID=Physo143529.2;Parent=Physo143529;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_142 . CDS 77882 78287 . + 0 ID=Physo143529;Parent=Physo143529;rank=3 scaffold_142 . CDS 78329 78716 . + 0 ID=Physo143529;Parent=Physo143529;rank=4 scaffold_142 . repeat_region 83318 83432 . + . description=Polinton-1_PI scaffold_142 . repeat_region 85124 85131 . ? . description=dust scaffold_142 . exon 77882 78287 . + . ID=Physo143529.3;Parent=Physo143529;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_142 . exon 78329 78716 . + . ID=Physo143529.4;Parent=Physo143529;constitutive=1;ensembl_phase=2;rank=4 scaffold_142 ensembl protein_coding_gene 83899 84937 . - . ID=Physo143530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420021;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 83899 84937 . - . ID=Physo143530;Parent=Physo143530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . exon 83899 84937 . - . ID=Physo143530.1;Parent=Physo143530;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_142 . CDS 84023 84883 . - 0 ID=Physo143530;Parent=Physo143530;rank=1 scaffold_142 . repeat_region 87587 87629 . ? . description=trf scaffold_142 . biological_region 89659 89661 0.999 + . logic_name=eponine scaffold_142 . biological_region 91896 91900 0.999 - . logic_name=eponine scaffold_142 ensembl protein_coding_gene 88307 89863 . + . ID=Physo143531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420022;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 88307 89863 . + . ID=Physo143531;Parent=Physo143531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 88307 89863 . + 0 ID=Physo143531;Parent=Physo143531;rank=1 scaffold_142 . exon 88307 89863 . + . ID=Physo143531.1;Parent=Physo143531;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 90592 91618 . + . ID=Physo143532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420023;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 90592 91618 . + . ID=Physo143532;Parent=Physo143532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . exon 90592 91618 . + . ID=Physo143532.1;Parent=Physo143532;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_142 . CDS 90646 91506 . + 0 ID=Physo143532;Parent=Physo143532;rank=1 scaffold_142 ensembl protein_coding_gene 94226 95449 . + . ID=Physo143533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420024;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 94226 95449 . + . ID=Physo143533;Parent=Physo143533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 94226 95449 . + 0 ID=Physo143533;Parent=Physo143533;rank=1 scaffold_142 . exon 94226 95449 . + . ID=Physo143533.1;Parent=Physo143533;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 95648 99610 . - . ID=Physo143534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420025;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 95648 99610 . - . ID=Physo143534;Parent=Physo143534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 95648 99610 . - 0 ID=Physo143534;Parent=Physo143534;rank=1 scaffold_142 . exon 95648 99610 . - . ID=Physo143534.1;Parent=Physo143534;constitutive=1;rank=1 scaffold_142 . repeat_region 100801 100831 . - . description=Polinton-1_PI scaffold_142 . repeat_region 100985 101199 . - . description=Polinton-1_PI scaffold_142 ensembl protein_coding_gene 99697 101153 . - . ID=Physo143535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420026;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 99697 101153 . - . ID=Physo143535;Parent=Physo143535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . exon 99697 100000 . - . ID=Physo143535.4;Parent=Physo143535;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_142 . CDS 99785 100000 . - 0 ID=Physo143535;Parent=Physo143535;rank=3 scaffold_142 . CDS 100063 100544 . - 0 ID=Physo143535;Parent=Physo143535;rank=2 scaffold_142 . exon 100063 100544 . - . ID=Physo143535.3;Parent=Physo143535;constitutive=1;ensembl_phase=1;rank=3 scaffold_142 . CDS 100603 100942 . - 0 ID=Physo143535;Parent=Physo143535;rank=1 scaffold_142 . exon 100603 101005 . - . ID=Physo143535.2;Parent=Physo143535;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_142 . exon 101041 101153 . - . ID=Physo143535.1;Parent=Physo143535;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_142 . repeat_region 106487 106496 . ? . description=dust scaffold_142 . biological_region 107257 107260 0.999 - . logic_name=eponine scaffold_142 . repeat_region 107406 107414 . ? . description=dust scaffold_142 . biological_region 110695 110695 0.999 + . logic_name=eponine scaffold_142 . repeat_region 111667 111705 . ? . description=trf scaffold_142 . repeat_region 112094 112180 . ? . description=trf scaffold_142 . repeat_region 112097 112178 . ? . description=dust scaffold_142 . repeat_region 112105 112178 . ? . description=trf scaffold_142 . repeat_region 112372 112405 . ? . description=trf scaffold_142 . repeat_region 113767 113832 . ? . description=trf scaffold_142 . biological_region 113792 113792 0.999 - . logic_name=eponine scaffold_142 . biological_region 113843 113851 0.999 - . logic_name=eponine scaffold_142 . biological_region 113912 113915 0.999 - . logic_name=eponine scaffold_142 . biological_region 113975 113978 0.999 + . logic_name=eponine scaffold_142 . biological_region 115145 115151 0.999 - . logic_name=eponine scaffold_142 . biological_region 115178 115179 0.999 - . logic_name=eponine scaffold_142 . biological_region 115201 115206 0.999 + . logic_name=eponine scaffold_142 ensembl protein_coding_gene 106667 107171 . - . ID=Physo123894;biotype=protein_coding;external_name=estExt_Genewise1.C_1420024;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 106667 107171 . - . ID=Physo123894;Parent=Physo123894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . exon 106667 107171 . - . ID=Physo123894.1;Parent=Physo123894;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_142 . CDS 106668 107168 . - 0 ID=Physo123894;Parent=Physo123894;rank=1 scaffold_142 ensembl protein_coding_gene 109340 110898 . + . ID=Physo143536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420027;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 109340 110898 . + . ID=Physo143536;Parent=Physo143536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 109340 109493 . + 0 ID=Physo143536;Parent=Physo143536;rank=1 scaffold_142 . exon 109340 109493 . + . ID=Physo143536.1;Parent=Physo143536;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 . CDS 109595 110898 . + 0 ID=Physo143536;Parent=Physo143536;rank=2 scaffold_142 . exon 109595 110898 . + . ID=Physo143536.2;Parent=Physo143536;constitutive=1;ensembl_phase=1;rank=2 scaffold_142 ensembl protein_coding_gene 112638 116309 . + . ID=Physo143537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420028;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 112638 116309 . + . ID=Physo143537;Parent=Physo143537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 112638 113066 . + 0 ID=Physo143537;Parent=Physo143537;rank=1 scaffold_142 . exon 112638 113066 . + . ID=Physo143537.1;Parent=Physo143537;constitutive=1;rank=1 scaffold_142 . CDS 113101 113249 . + 0 ID=Physo143537;Parent=Physo143537;rank=2 scaffold_142 . exon 113101 113249 . + . ID=Physo143537.2;Parent=Physo143537;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_142 . CDS 113280 114360 . + 0 ID=Physo143537;Parent=Physo143537;rank=3 scaffold_142 . exon 113280 114360 . + . ID=Physo143537.3;Parent=Physo143537;constitutive=1;ensembl_phase=2;rank=3 scaffold_142 . CDS 114432 115313 . + 0 ID=Physo143537;Parent=Physo143537;rank=4 scaffold_142 . exon 114432 115313 . + . ID=Physo143537.4;Parent=Physo143537;constitutive=1;rank=4 scaffold_142 . CDS 115342 115375 . + 0 ID=Physo143537;Parent=Physo143537;rank=5 scaffold_142 . exon 115342 115375 . + . ID=Physo143537.5;Parent=Physo143537;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_142 . CDS 115426 116309 . + 0 ID=Physo143537;Parent=Physo143537;rank=6 scaffold_142 . exon 115426 116309 . + . ID=Physo143537.6;Parent=Physo143537;constitutive=1;ensembl_phase=1;rank=6 scaffold_142 . repeat_region 118311 118440 . + . description=Polinton-1_PI scaffold_142 . repeat_region 118439 118741 . - . description=Polinton-1_PI scaffold_142 ensembl protein_coding_gene 119707 120168 . - . ID=Physo143538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420029;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 119707 120168 . - . ID=Physo143538;Parent=Physo143538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 119707 120168 . - 0 ID=Physo143538;Parent=Physo143538;rank=1 scaffold_142 . exon 119707 120168 . - . ID=Physo143538.1;Parent=Physo143538;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 124082 124942 . + . ID=Physo143539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420030;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 124082 124942 . + . ID=Physo143539;Parent=Physo143539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 124082 124337 . + 0 ID=Physo143539;Parent=Physo143539;rank=1 scaffold_142 . exon 124082 124337 . + . ID=Physo143539.1;Parent=Physo143539;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_142 . CDS 124402 124824 . + 0 ID=Physo143539;Parent=Physo143539;rank=2 scaffold_142 . exon 124402 124824 . + . ID=Physo143539.2;Parent=Physo143539;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_142 . CDS 124865 124875 . + 0 ID=Physo143539;Parent=Physo143539;rank=3 scaffold_142 . exon 124865 124875 . + . ID=Physo143539.3;Parent=Physo143539;constitutive=1;ensembl_phase=1;rank=3 scaffold_142 . CDS 124934 124942 . + 0 ID=Physo143539;Parent=Physo143539;rank=4 scaffold_142 . exon 124934 124942 . + . ID=Physo143539.4;Parent=Physo143539;constitutive=1;rank=4 scaffold_142 ensembl protein_coding_gene 125117 126098 . - . ID=Physo143540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420031;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 125117 126098 . - . ID=Physo143540;Parent=Physo143540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 125117 125389 . - 0 ID=Physo143540;Parent=Physo143540;rank=4 scaffold_142 . exon 125117 125389 . - . ID=Physo143540.4;Parent=Physo143540;constitutive=1;rank=4 scaffold_142 . CDS 125463 125607 . - 0 ID=Physo143540;Parent=Physo143540;rank=3 scaffold_142 . exon 125463 125607 . - . ID=Physo143540.3;Parent=Physo143540;constitutive=1;ensembl_phase=2;rank=3 scaffold_142 . CDS 125673 125805 . - 0 ID=Physo143540;Parent=Physo143540;rank=2 scaffold_142 . exon 125673 125805 . - . ID=Physo143540.2;Parent=Physo143540;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_142 . CDS 125889 126093 . - 0 ID=Physo143540;Parent=Physo143540;rank=1 scaffold_142 . biological_region 126452 126456 0.999 - . logic_name=eponine scaffold_142 . biological_region 126773 126774 0.999 - . logic_name=eponine scaffold_142 . biological_region 129596 129600 0.999 + . logic_name=eponine scaffold_142 . repeat_region 132023 132030 . ? . description=dust scaffold_142 . biological_region 132928 132932 0.999 - . logic_name=eponine scaffold_142 . repeat_region 134644 134651 . ? . description=dust scaffold_142 . exon 125889 126098 . - . ID=Physo143540.1;Parent=Physo143540;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_142 ensembl protein_coding_gene 126479 126871 . - . ID=Physo143541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420032;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 126479 126871 . - . ID=Physo143541;Parent=Physo143541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 126479 126862 . - 0 ID=Physo143541;Parent=Physo143541;rank=1 scaffold_142 . exon 126479 126871 . - . ID=Physo143541.1;Parent=Physo143541;constitutive=1;ensembl_phase=-1;rank=1 scaffold_142 ensembl protein_coding_gene 128703 130685 . + . ID=Physo143542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420033;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 128703 130685 . + . ID=Physo143542;Parent=Physo143542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 128703 130685 . + 0 ID=Physo143542;Parent=Physo143542;rank=1 scaffold_142 . exon 128703 130685 . + . ID=Physo143542.1;Parent=Physo143542;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 132450 134561 . + . ID=Physo143543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420034;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 132450 134561 . + . ID=Physo143543;Parent=Physo143543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 132450 134561 . + 0 ID=Physo143543;Parent=Physo143543;rank=1 scaffold_142 . exon 132450 134561 . + . ID=Physo143543.1;Parent=Physo143543;constitutive=1;rank=1 scaffold_142 ensembl protein_coding_gene 134948 135484 . + . ID=Physo143544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1420035;logic_name=jgi_physo1_1 scaffold_142 ensembl transcript 134948 135484 . + . ID=Physo143544;Parent=Physo143544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_142 . CDS 134948 135484 . + 0 ID=Physo143544;Parent=Physo143544;rank=1 scaffold_142 . exon 134948 135484 . + . ID=Physo143544.1;Parent=Physo143544;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_141 1 136050 scaffold_141 . repeat_region 4774 4832 . ? . description=dust scaffold_141 . repeat_region 4799 4819 . ? . description=trf scaffold_141 . repeat_region 7041 7048 . ? . description=dust scaffold_141 . biological_region 9396 9397 0.999 - . logic_name=eponine scaffold_141 . biological_region 9411 9425 0.999 + . logic_name=eponine scaffold_141 . repeat_region 9431 9472 . ? . description=dust scaffold_141 . biological_region 9454 9457 0.999 + . logic_name=eponine scaffold_141 . biological_region 9459 9463 0.999 - . logic_name=eponine scaffold_141 . biological_region 9483 9483 0.999 - . logic_name=eponine scaffold_141 . biological_region 9510 9521 0.999 - . logic_name=eponine scaffold_141 . biological_region 9516 9517 0.999 + . logic_name=eponine scaffold_141 . biological_region 9575 9580 0.999 - . logic_name=eponine scaffold_141 ensembl protein_coding_gene 7580 9667 . - . ID=Physo143486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410001;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 7580 9667 . - . ID=Physo143486;Parent=Physo143486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 7580 9667 . - 0 ID=Physo143486;Parent=Physo143486;rank=1 scaffold_141 . exon 7580 9667 . - . ID=Physo143486.1;Parent=Physo143486;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 11294 12001 . + . ID=Physo143487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410002;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 11294 12001 . + . ID=Physo143487;Parent=Physo143487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 11294 12001 . + 0 ID=Physo143487;Parent=Physo143487;rank=1 scaffold_141 . exon 11294 12001 . + . ID=Physo143487.1;Parent=Physo143487;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 13980 15144 . + . ID=Physo143488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410003;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 13980 15144 . + . ID=Physo143488;Parent=Physo143488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 13980 14361 . + 0 ID=Physo143488;Parent=Physo143488;rank=1 scaffold_141 . exon 13980 14361 . + . ID=Physo143488.1;Parent=Physo143488;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_141 . CDS 14422 14774 . + 0 ID=Physo143488;Parent=Physo143488;rank=2 scaffold_141 . exon 14422 14774 . + . ID=Physo143488.2;Parent=Physo143488;constitutive=1;ensembl_phase=1;rank=2 scaffold_141 . CDS 14845 15144 . + 0 ID=Physo143488;Parent=Physo143488;rank=3 scaffold_141 . exon 14845 15144 . + . ID=Physo143488.3;Parent=Physo143488;constitutive=1;rank=3 scaffold_141 ensembl protein_coding_gene 15534 19588 . - . ID=Physo143489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410004;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 15534 19588 . - . ID=Physo143489;Parent=Physo143489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 15534 16768 . - 0 ID=Physo143489;Parent=Physo143489;rank=2 scaffold_141 . exon 15534 16768 . - . ID=Physo143489.2;Parent=Physo143489;constitutive=1;ensembl_phase=1;rank=2 scaffold_141 . CDS 16816 19588 . - 0 ID=Physo143489;Parent=Physo143489;rank=1 scaffold_141 . exon 16816 19588 . - . ID=Physo143489.1;Parent=Physo143489;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_141 . biological_region 19440 19441 0.999 + . logic_name=eponine scaffold_141 . biological_region 19481 19483 0.999 + . logic_name=eponine scaffold_141 . biological_region 20150 20155 0.999 - . logic_name=eponine scaffold_141 . biological_region 20251 20251 0.999 - . logic_name=eponine scaffold_141 . repeat_region 20367 20393 . ? . description=dust scaffold_141 . biological_region 24718 24718 0.999 + . logic_name=eponine scaffold_141 . biological_region 24749 24753 0.999 + . logic_name=eponine scaffold_141 . biological_region 24816 24820 0.999 - . logic_name=eponine scaffold_141 . biological_region 24846 24852 0.999 - . logic_name=eponine scaffold_141 . biological_region 24901 24903 0.999 + . logic_name=eponine scaffold_141 . biological_region 24958 24961 0.999 - . logic_name=eponine scaffold_141 . biological_region 25051 25052 0.999 - . logic_name=eponine scaffold_141 . biological_region 25071 25076 0.999 - . logic_name=eponine scaffold_141 . biological_region 25095 25095 0.999 - . logic_name=eponine scaffold_141 ensembl protein_coding_gene 21811 24075 . - . ID=Physo109560;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1410001;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 21811 24075 . - . ID=Physo109560;Parent=Physo109560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 21811 22208 . - 0 ID=Physo109560;Parent=Physo109560;rank=2 scaffold_141 . exon 21811 22208 . - . ID=Physo109560.2;Parent=Physo109560;constitutive=1;ensembl_phase=1;rank=2 scaffold_141 . CDS 22278 24075 . - 0 ID=Physo109560;Parent=Physo109560;rank=1 scaffold_141 . exon 22278 24075 . - . ID=Physo109560.1;Parent=Physo109560;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_141 ensembl protein_coding_gene 20278 21625 . + . ID=Physo143490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410005;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 20278 21625 . + . ID=Physo143490;Parent=Physo143490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 20278 20351 . + 0 ID=Physo143490;Parent=Physo143490;rank=1 scaffold_141 . exon 20278 20351 . + . ID=Physo143490.1;Parent=Physo143490;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_141 . CDS 20464 21625 . + 0 ID=Physo143490;Parent=Physo143490;rank=2 scaffold_141 . exon 20464 21625 . + . ID=Physo143490.2;Parent=Physo143490;constitutive=1;ensembl_phase=2;rank=2 scaffold_141 ensembl protein_coding_gene 24731 26310 . + . ID=Physo158770;biotype=protein_coding;external_name=C_scaffold_141000002;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 24731 26310 . + . ID=Physo158770;Parent=Physo158770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 24731 25399 . + 0 ID=Physo158770;Parent=Physo158770;rank=1 scaffold_141 . exon 24731 25399 . + . ID=Physo158770.1;Parent=Physo158770;constitutive=1;rank=1 scaffold_141 . CDS 25479 25580 . + 0 ID=Physo158770;Parent=Physo158770;rank=2 scaffold_141 . exon 25479 25580 . + . ID=Physo158770.2;Parent=Physo158770;constitutive=1;rank=2 scaffold_141 . CDS 25639 25931 . + 0 ID=Physo158770;Parent=Physo158770;rank=3 scaffold_141 . exon 25639 25931 . + . ID=Physo158770.3;Parent=Physo158770;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_141 . CDS 25953 26124 . + 0 ID=Physo158770;Parent=Physo158770;rank=4 scaffold_141 . exon 25953 26124 . + . ID=Physo158770.4;Parent=Physo158770;constitutive=1;ensembl_phase=2;rank=4 scaffold_141 . CDS 26239 26310 . + 0 ID=Physo158770;Parent=Physo158770;rank=5 scaffold_141 . exon 26239 26310 . + . ID=Physo158770.5;Parent=Physo158770;constitutive=1;rank=5 scaffold_141 ensembl protein_coding_gene 29280 30601 . - . ID=Physo143493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410008;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 29280 30601 . - . ID=Physo143493;Parent=Physo143493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 29280 29301 . - 0 ID=Physo143493;Parent=Physo143493;rank=4 scaffold_141 . exon 29280 29301 . - . ID=Physo143493.4;Parent=Physo143493;constitutive=1;ensembl_phase=2;rank=4 scaffold_141 . CDS 29373 30011 . - 0 ID=Physo143493;Parent=Physo143493;rank=3 scaffold_141 . exon 29373 30011 . - . ID=Physo143493.3;Parent=Physo143493;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_141 . CDS 30099 30479 . - 0 ID=Physo143493;Parent=Physo143493;rank=2 scaffold_141 . exon 30099 30479 . - . ID=Physo143493.2;Parent=Physo143493;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_141 . CDS 30540 30601 . - 0 ID=Physo143493;Parent=Physo143493;rank=1 scaffold_141 . exon 30540 30601 . - . ID=Physo143493.1;Parent=Physo143493;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_141 ensembl protein_coding_gene 30727 31428 . - . ID=Physo143494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410009;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 30727 31428 . - . ID=Physo143494;Parent=Physo143494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . exon 30727 31428 . - . ID=Physo143494.1;Parent=Physo143494;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_141 . CDS 30905 31426 . - 0 ID=Physo143494;Parent=Physo143494;rank=1 scaffold_141 ensembl protein_coding_gene 31696 33942 . + . ID=Physo143495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410010;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 31696 33942 . + . ID=Physo143495;Parent=Physo143495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 31696 31765 . + 0 ID=Physo143495;Parent=Physo143495;rank=1 scaffold_141 . exon 31696 31765 . + . ID=Physo143495.1;Parent=Physo143495;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_141 . CDS 31860 31924 . + 0 ID=Physo143495;Parent=Physo143495;rank=2 scaffold_141 . exon 31860 31924 . + . ID=Physo143495.2;Parent=Physo143495;constitutive=1;ensembl_phase=1;rank=2 scaffold_141 . CDS 31980 32204 . + 0 ID=Physo143495;Parent=Physo143495;rank=3 scaffold_141 . exon 31980 32204 . + . ID=Physo143495.3;Parent=Physo143495;constitutive=1;rank=3 scaffold_141 . CDS 32280 32363 . + 0 ID=Physo143495;Parent=Physo143495;rank=4 scaffold_141 . exon 32280 32363 . + . ID=Physo143495.4;Parent=Physo143495;constitutive=1;rank=4 scaffold_141 . CDS 32644 32786 . + 0 ID=Physo143495;Parent=Physo143495;rank=5 scaffold_141 . exon 32644 32786 . + . ID=Physo143495.5;Parent=Physo143495;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_141 . CDS 32868 33942 . + 0 ID=Physo143495;Parent=Physo143495;rank=6 scaffold_141 . exon 32868 33942 . + . ID=Physo143495.6;Parent=Physo143495;constitutive=1;ensembl_phase=2;rank=6 scaffold_141 ensembl protein_coding_gene 33981 38845 . - . ID=Physo143496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410011;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 33981 38845 . - . ID=Physo143496;Parent=Physo143496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . exon 33981 34214 . - . ID=Physo143496.2;Parent=Physo143496;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_141 . CDS 34132 34214 . - 0 ID=Physo143496;Parent=Physo143496;rank=2 scaffold_141 . CDS 34297 38845 . - 0 ID=Physo143496;Parent=Physo143496;rank=1 scaffold_141 . exon 34297 38845 . - . ID=Physo143496.1;Parent=Physo143496;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_141 . biological_region 41200 41203 0.999 + . logic_name=eponine scaffold_141 . biological_region 41387 41393 0.999 + . logic_name=eponine scaffold_141 . biological_region 42029 42031 0.999 - . logic_name=eponine scaffold_141 . repeat_region 42570 42577 . ? . description=dust scaffold_141 . biological_region 46185 46187 0.999 - . logic_name=eponine scaffold_141 . repeat_region 46449 46472 . ? . description=trf scaffold_141 . biological_region 46961 46965 0.999 + . logic_name=eponine scaffold_141 . biological_region 47103 47107 0.999 - . logic_name=eponine scaffold_141 ensembl protein_coding_gene 39095 42127 . - . ID=Physo143497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410012;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 39095 42127 . - . ID=Physo143497;Parent=Physo143497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 39095 41821 . - 0 ID=Physo143497;Parent=Physo143497;rank=2 scaffold_141 . exon 39095 41821 . - . ID=Physo143497.2;Parent=Physo143497;constitutive=1;rank=2 scaffold_141 . CDS 41906 42127 . - 0 ID=Physo143497;Parent=Physo143497;rank=1 scaffold_141 . exon 41906 42127 . - . ID=Physo143497.1;Parent=Physo143497;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 42740 46180 . - . ID=Physo143498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410013;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 42740 46180 . - . ID=Physo143498;Parent=Physo143498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 42740 46180 . - 0 ID=Physo143498;Parent=Physo143498;rank=1 scaffold_141 . exon 42740 46180 . - . ID=Physo143498.1;Parent=Physo143498;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 46530 47836 . + . ID=Physo143499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410014;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 46530 47836 . + . ID=Physo143499;Parent=Physo143499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 46530 46694 . + 0 ID=Physo143499;Parent=Physo143499;rank=1 scaffold_141 . exon 46530 46694 . + . ID=Physo143499.1;Parent=Physo143499;constitutive=1;rank=1 scaffold_141 . CDS 46765 47430 . + 0 ID=Physo143499;Parent=Physo143499;rank=2 scaffold_141 . exon 46765 47430 . + . ID=Physo143499.2;Parent=Physo143499;constitutive=1;rank=2 scaffold_141 . CDS 47509 47566 . + 0 ID=Physo143499;Parent=Physo143499;rank=3 scaffold_141 . exon 47509 47566 . + . ID=Physo143499.3;Parent=Physo143499;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_141 . CDS 47637 47836 . + 0 ID=Physo143499;Parent=Physo143499;rank=4 scaffold_141 . exon 47637 47836 . + . ID=Physo143499.4;Parent=Physo143499;constitutive=1;ensembl_phase=1;rank=4 scaffold_141 . repeat_region 49405 49862 . + . description=Polinton-1_PI scaffold_141 . repeat_region 55706 56016 . - . description=Polinton-1_PI scaffold_141 . repeat_region 56096 57081 . - . description=Polinton-1_PI scaffold_141 . biological_region 59607 59608 0.999 - . logic_name=eponine scaffold_141 . biological_region 62899 62899 0.999 - . logic_name=eponine scaffold_141 . repeat_region 65629 65636 . ? . description=dust scaffold_141 . biological_region 65656 65664 0.999 + . logic_name=eponine scaffold_141 . repeat_region 66598 66613 . ? . description=dust scaffold_141 ensembl protein_coding_gene 59411 63571 . + . ID=Physo143500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410015;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 59411 63571 . + . ID=Physo143500;Parent=Physo143500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 59411 62272 . + 0 ID=Physo143500;Parent=Physo143500;rank=1 scaffold_141 . exon 59411 62272 . + . ID=Physo143500.1;Parent=Physo143500;constitutive=1;rank=1 scaffold_141 . CDS 62324 63571 . + 0 ID=Physo143500;Parent=Physo143500;rank=2 scaffold_141 . exon 62324 63571 . + . ID=Physo143500.2;Parent=Physo143500;constitutive=1;rank=2 scaffold_141 . repeat_region 77232 77252 . ? . description=trf scaffold_141 ensembl protein_coding_gene 70368 73792 . + . ID=Physo143501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410016;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 70368 73792 . + . ID=Physo143501;Parent=Physo143501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 70368 71158 . + 0 ID=Physo143501;Parent=Physo143501;rank=1 scaffold_141 . exon 70368 71158 . + . ID=Physo143501.1;Parent=Physo143501;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_141 . CDS 71201 72218 . + 0 ID=Physo143501;Parent=Physo143501;rank=2 scaffold_141 . exon 71201 72218 . + . ID=Physo143501.2;Parent=Physo143501;constitutive=1;ensembl_phase=2;rank=2 scaffold_141 . CDS 72266 73792 . + 0 ID=Physo143501;Parent=Physo143501;rank=3 scaffold_141 . exon 72266 73792 . + . ID=Physo143501.3;Parent=Physo143501;constitutive=1;rank=3 scaffold_141 ensembl protein_coding_gene 74435 75143 . + . ID=Physo143502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410017;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 74435 75143 . + . ID=Physo143502;Parent=Physo143502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 74435 74908 . + 0 ID=Physo143502;Parent=Physo143502;rank=1 scaffold_141 . exon 74435 74908 . + . ID=Physo143502.1;Parent=Physo143502;constitutive=1;rank=1 scaffold_141 . CDS 74967 75143 . + 0 ID=Physo143502;Parent=Physo143502;rank=2 scaffold_141 . exon 74967 75143 . + . ID=Physo143502.2;Parent=Physo143502;constitutive=1;rank=2 scaffold_141 ensembl protein_coding_gene 77599 81542 . + . ID=Physo143505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410020;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 77599 81542 . + . ID=Physo143505;Parent=Physo143505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 77599 81491 . + 0 ID=Physo143505;Parent=Physo143505;rank=1 scaffold_141 . exon 77599 81491 . + . ID=Physo143505.1;Parent=Physo143505;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_141 . CDS 81512 81542 . + 0 ID=Physo143505;Parent=Physo143505;rank=2 scaffold_141 ensembl protein_coding_gene 75684 76985 . + . ID=Physo158771;biotype=protein_coding;external_name=C_scaffold_141000003;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 75684 76985 . + . ID=Physo158771;Parent=Physo158771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 75684 76210 . + 0 ID=Physo158771;Parent=Physo158771;rank=1 scaffold_141 . exon 75684 76210 . + . ID=Physo158771.1;Parent=Physo158771;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_141 . CDS 76367 76609 . + 0 ID=Physo158771;Parent=Physo158771;rank=2 scaffold_141 . exon 76367 76609 . + . ID=Physo158771.2;Parent=Physo158771;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_141 . CDS 76649 76985 . + 0 ID=Physo158771;Parent=Physo158771;rank=3 scaffold_141 . exon 76649 76985 . + . ID=Physo158771.3;Parent=Physo158771;constitutive=1;ensembl_phase=2;rank=3 scaffold_141 . biological_region 80957 80961 0.999 + . logic_name=eponine scaffold_141 . repeat_region 81572 81597 . ? . description=dust scaffold_141 . biological_region 81803 81808 0.999 - . logic_name=eponine scaffold_141 . biological_region 82176 82184 0.999 + . logic_name=eponine scaffold_141 . biological_region 82230 82231 0.999 + . logic_name=eponine scaffold_141 . biological_region 82266 82271 0.999 + . logic_name=eponine scaffold_141 . repeat_region 84986 84994 . ? . description=dust scaffold_141 . exon 81512 81542 . + . ID=Physo143505.2;Parent=Physo143505;constitutive=1;ensembl_phase=2;rank=2 scaffold_141 ensembl protein_coding_gene 81615 82771 . - . ID=Physo143506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410021;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 81615 82771 . - . ID=Physo143506;Parent=Physo143506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 81615 81929 . - 0 ID=Physo143506;Parent=Physo143506;rank=2 scaffold_141 . exon 81615 81929 . - . ID=Physo143506.2;Parent=Physo143506;constitutive=1;rank=2 scaffold_141 . CDS 81989 82771 . - 0 ID=Physo143506;Parent=Physo143506;rank=1 scaffold_141 . exon 81989 82771 . - . ID=Physo143506.1;Parent=Physo143506;constitutive=1;rank=1 scaffold_141 . repeat_region 88353 88505 . ? . description=trf scaffold_141 . biological_region 97957 97957 0.999 - . logic_name=eponine scaffold_141 . repeat_region 102728 102777 . ? . description=dust scaffold_141 . repeat_region 103831 103840 . ? . description=dust scaffold_141 . repeat_region 103983 103990 . ? . description=dust scaffold_141 . repeat_region 105599 105672 . + . description=(CAAT)n scaffold_141 ensembl protein_coding_gene 98857 101152 . - . ID=Physo143507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410022;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 98857 101152 . - . ID=Physo143507;Parent=Physo143507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 98857 98901 . - 0 ID=Physo143507;Parent=Physo143507;rank=7 scaffold_141 . exon 98857 98901 . - . ID=Physo143507.7;Parent=Physo143507;constitutive=1;rank=7 scaffold_141 . CDS 98976 99199 . - 0 ID=Physo143507;Parent=Physo143507;rank=6 scaffold_141 . exon 98976 99199 . - . ID=Physo143507.6;Parent=Physo143507;constitutive=1;ensembl_phase=1;rank=6 scaffold_141 . CDS 99264 99540 . - 0 ID=Physo143507;Parent=Physo143507;rank=5 scaffold_141 . exon 99264 99540 . - . ID=Physo143507.5;Parent=Physo143507;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_141 . CDS 99757 99856 . - 0 ID=Physo143507;Parent=Physo143507;rank=4 scaffold_141 . exon 99757 99856 . - . ID=Physo143507.4;Parent=Physo143507;constitutive=1;ensembl_phase=2;rank=4 scaffold_141 . CDS 100009 100115 . - 0 ID=Physo143507;Parent=Physo143507;rank=3 scaffold_141 . exon 100009 100115 . - . ID=Physo143507.3;Parent=Physo143507;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_141 . CDS 100210 101042 . - 0 ID=Physo143507;Parent=Physo143507;rank=2 scaffold_141 . exon 100210 101042 . - . ID=Physo143507.2;Parent=Physo143507;constitutive=1;ensembl_phase=1;rank=2 scaffold_141 . CDS 101101 101152 . - 0 ID=Physo143507;Parent=Physo143507;rank=1 scaffold_141 . exon 101101 101152 . - . ID=Physo143507.1;Parent=Physo143507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_141 ensembl protein_coding_gene 102011 103466 . - . ID=Physo143508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410023;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 102011 103466 . - . ID=Physo143508;Parent=Physo143508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 102011 102049 . - 0 ID=Physo143508;Parent=Physo143508;rank=6 scaffold_141 . exon 102011 102049 . - . ID=Physo143508.6;Parent=Physo143508;constitutive=1;rank=6 scaffold_141 . CDS 102307 102397 . - 0 ID=Physo143508;Parent=Physo143508;rank=5 scaffold_141 . exon 102307 102397 . - . ID=Physo143508.5;Parent=Physo143508;constitutive=1;ensembl_phase=2;rank=5 scaffold_141 . CDS 102476 102720 . - 0 ID=Physo143508;Parent=Physo143508;rank=4 scaffold_141 . exon 102476 102720 . - . ID=Physo143508.4;Parent=Physo143508;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_141 . CDS 102801 103006 . - 0 ID=Physo143508;Parent=Physo143508;rank=3 scaffold_141 . exon 102801 103006 . - . ID=Physo143508.3;Parent=Physo143508;constitutive=1;ensembl_phase=1;rank=3 scaffold_141 . CDS 103086 103308 . - 0 ID=Physo143508;Parent=Physo143508;rank=2 scaffold_141 . exon 103086 103308 . - . ID=Physo143508.2;Parent=Physo143508;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_141 . CDS 103386 103466 . - 0 ID=Physo143508;Parent=Physo143508;rank=1 scaffold_141 . exon 103386 103466 . - . ID=Physo143508.1;Parent=Physo143508;constitutive=1;rank=1 scaffold_141 ensembl protein_coding_gene 105761 106914 . - . ID=Physo143509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1410024;logic_name=jgi_physo1_1 scaffold_141 ensembl transcript 105761 106914 . - . ID=Physo143509;Parent=Physo143509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_141 . CDS 105761 106366 . - 0 ID=Physo143509;Parent=Physo143509;rank=2 scaffold_141 . exon 105761 106366 . - . ID=Physo143509.2;Parent=Physo143509;constitutive=1;rank=2 scaffold_141 . CDS 106615 106914 . - 0 ID=Physo143509;Parent=Physo143509;rank=1 scaffold_141 . exon 106615 106914 . - . ID=Physo143509.1;Parent=Physo143509;constitutive=1;rank=1 scaffold_141 . repeat_region 107950 107973 . ? . description=trf scaffold_141 . repeat_region 108845 131414 . ? . description=dust scaffold_141 . biological_region 131585 131585 0.999 - . logic_name=eponine scaffold_141 . repeat_region 133685 133704 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_140 1 141669 scaffold_140 . repeat_region 3424 3435 . ? . description=dust scaffold_140 . biological_region 3451 3463 0.999 + . logic_name=eponine scaffold_140 . repeat_region 3981 4025 . ? . description=trf scaffold_140 . repeat_region 6325 6348 . ? . description=dust scaffold_140 . repeat_region 6611 6619 . ? . description=dust scaffold_140 . biological_region 6870 6874 0.999 - . logic_name=eponine scaffold_140 . repeat_region 9131 9138 . ? . description=dust scaffold_140 . repeat_region 9151 9191 . ? . description=trf scaffold_140 ensembl protein_coding_gene 2912 4653 . - . ID=Physo143463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400001;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 2912 4653 . - . ID=Physo143463;Parent=Physo143463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 2912 3050 . - 0 ID=Physo143463;Parent=Physo143463;rank=7 scaffold_140 . exon 2912 3050 . - . ID=Physo143463.7;Parent=Physo143463;constitutive=1;ensembl_phase=2;rank=7 scaffold_140 . CDS 3127 3244 . - 0 ID=Physo143463;Parent=Physo143463;rank=6 scaffold_140 . exon 3127 3244 . - . ID=Physo143463.6;Parent=Physo143463;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_140 . CDS 3465 3616 . - 0 ID=Physo143463;Parent=Physo143463;rank=5 scaffold_140 . exon 3465 3616 . - . ID=Physo143463.5;Parent=Physo143463;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_140 . CDS 3838 3930 . - 0 ID=Physo143463;Parent=Physo143463;rank=4 scaffold_140 . exon 3838 3930 . - . ID=Physo143463.4;Parent=Physo143463;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_140 . CDS 4168 4273 . - 0 ID=Physo143463;Parent=Physo143463;rank=3 scaffold_140 . exon 4168 4273 . - . ID=Physo143463.3;Parent=Physo143463;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_140 . CDS 4394 4412 . - 0 ID=Physo143463;Parent=Physo143463;rank=2 scaffold_140 . exon 4394 4412 . - . ID=Physo143463.2;Parent=Physo143463;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_140 . CDS 4597 4653 . - 0 ID=Physo143463;Parent=Physo143463;rank=1 scaffold_140 . exon 4597 4653 . - . ID=Physo143463.1;Parent=Physo143463;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 6381 8212 . + . ID=Physo143464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400002;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 6381 8212 . + . ID=Physo143464;Parent=Physo143464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 6381 6407 . + 0 ID=Physo143464;Parent=Physo143464;rank=1 scaffold_140 . exon 6381 6407 . + . ID=Physo143464.1;Parent=Physo143464;constitutive=1;rank=1 scaffold_140 . CDS 6698 6939 . + 0 ID=Physo143464;Parent=Physo143464;rank=2 scaffold_140 . exon 6698 6939 . + . ID=Physo143464.2;Parent=Physo143464;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_140 . CDS 7016 7107 . + 0 ID=Physo143464;Parent=Physo143464;rank=3 scaffold_140 . exon 7016 7107 . + . ID=Physo143464.3;Parent=Physo143464;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_140 . CDS 7323 7427 . + 0 ID=Physo143464;Parent=Physo143464;rank=4 scaffold_140 . exon 7323 7427 . + . ID=Physo143464.4;Parent=Physo143464;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_140 . CDS 7494 7569 . + 0 ID=Physo143464;Parent=Physo143464;rank=5 scaffold_140 . exon 7494 7569 . + . ID=Physo143464.5;Parent=Physo143464;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_140 . CDS 7596 7731 . + 0 ID=Physo143464;Parent=Physo143464;rank=6 scaffold_140 . exon 7596 7731 . + . ID=Physo143464.6;Parent=Physo143464;constitutive=1;ensembl_phase=2;rank=6 scaffold_140 . CDS 7904 8122 . + 0 ID=Physo143464;Parent=Physo143464;rank=7 scaffold_140 . exon 7904 8143 . + . ID=Physo143464.7;Parent=Physo143464;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_140 . exon 8200 8212 . + . ID=Physo143464.8;Parent=Physo143464;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=8 scaffold_140 . repeat_region 14559 14712 . - . description=GypsyPi-1c_LTR scaffold_140 ensembl protein_coding_gene 17530 18322 . + . ID=Physo123828;biotype=protein_coding;external_name=estExt_Genewise1.C_1400011;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 17530 18322 . + . ID=Physo123828;Parent=Physo123828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . exon 17530 18322 . + . ID=Physo123828.1;Parent=Physo123828;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_140 . CDS 17539 17946 . + 0 ID=Physo123828;Parent=Physo123828;rank=1 scaffold_140 ensembl protein_coding_gene 10573 12877 . + . ID=Physo143465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400003;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 10573 12877 . + . ID=Physo143465;Parent=Physo143465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 10573 10629 . + 0 ID=Physo143465;Parent=Physo143465;rank=1 scaffold_140 . exon 10573 10629 . + . ID=Physo143465.1;Parent=Physo143465;constitutive=1;rank=1 scaffold_140 . CDS 10712 11041 . + 0 ID=Physo143465;Parent=Physo143465;rank=2 scaffold_140 . exon 10712 11041 . + . ID=Physo143465.2;Parent=Physo143465;constitutive=1;rank=2 scaffold_140 . CDS 11624 12001 . + 0 ID=Physo143465;Parent=Physo143465;rank=3 scaffold_140 . exon 11624 12001 . + . ID=Physo143465.3;Parent=Physo143465;constitutive=1;rank=3 scaffold_140 . CDS 12103 12228 . + 0 ID=Physo143465;Parent=Physo143465;rank=4 scaffold_140 . exon 12103 12228 . + . ID=Physo143465.4;Parent=Physo143465;constitutive=1;rank=4 scaffold_140 . CDS 12322 12563 . + 0 ID=Physo143465;Parent=Physo143465;rank=5 scaffold_140 . exon 12322 12563 . + . ID=Physo143465.5;Parent=Physo143465;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_140 . CDS 12636 12807 . + 0 ID=Physo143465;Parent=Physo143465;rank=6 scaffold_140 . exon 12636 12877 . + . ID=Physo143465.6;Parent=Physo143465;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_140 . biological_region 19213 19219 0.999 + . logic_name=eponine scaffold_140 . biological_region 19783 19784 0.999 + . logic_name=eponine scaffold_140 . repeat_region 19985 20025 . ? . description=trf scaffold_140 . repeat_region 19986 20196 . ? . description=trf scaffold_140 . repeat_region 20061 20121 . ? . description=trf scaffold_140 . repeat_region 20082 20271 . ? . description=trf scaffold_140 . repeat_region 20156 20196 . ? . description=trf scaffold_140 . repeat_region 20231 20272 . ? . description=trf scaffold_140 . repeat_region 21386 21394 . ? . description=dust scaffold_140 . repeat_region 22847 22855 . ? . description=dust scaffold_140 . biological_region 23978 23978 0.999 + . logic_name=eponine scaffold_140 . repeat_region 24014 24088 . ? . description=trf scaffold_140 . repeat_region 24017 24080 . ? . description=dust scaffold_140 . repeat_region 26974 26981 . ? . description=dust scaffold_140 . repeat_region 27534 27728 . ? . description=trf scaffold_140 . repeat_region 27549 27693 . ? . description=trf scaffold_140 ensembl protein_coding_gene 18939 19436 . - . ID=Physo143467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400005;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 18939 19436 . - . ID=Physo143467;Parent=Physo143467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 18939 19192 . - 0 ID=Physo143467;Parent=Physo143467;rank=2 scaffold_140 . exon 18939 19192 . - . ID=Physo143467.2;Parent=Physo143467;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 19289 19436 . - 0 ID=Physo143467;Parent=Physo143467;rank=1 scaffold_140 . exon 19289 19436 . - . ID=Physo143467.1;Parent=Physo143467;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 ensembl protein_coding_gene 19939 20244 . + . ID=Physo143468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400006;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 19939 20244 . + . ID=Physo143468;Parent=Physo143468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 19939 20244 . + 0 ID=Physo143468;Parent=Physo143468;rank=1 scaffold_140 . exon 19939 20244 . + . ID=Physo143468.1;Parent=Physo143468;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 21525 21958 . - . ID=Physo143469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400007;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 21525 21958 . - . ID=Physo143469;Parent=Physo143469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 21525 21916 . - 0 ID=Physo143469;Parent=Physo143469;rank=2 scaffold_140 . exon 21525 21916 . - . ID=Physo143469.2;Parent=Physo143469;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 21937 21958 . - 0 ID=Physo143469;Parent=Physo143469;rank=1 scaffold_140 . exon 21937 21958 . - . ID=Physo143469.1;Parent=Physo143469;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 ensembl protein_coding_gene 22963 23536 . + . ID=Physo143470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400008;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 22963 23536 . + . ID=Physo143470;Parent=Physo143470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 22963 23242 . + 0 ID=Physo143470;Parent=Physo143470;rank=1 scaffold_140 . exon 22963 23242 . + . ID=Physo143470.1;Parent=Physo143470;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 . CDS 23457 23536 . + 0 ID=Physo143470;Parent=Physo143470;rank=2 scaffold_140 . exon 23457 23536 . + . ID=Physo143470.2;Parent=Physo143470;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 ensembl protein_coding_gene 23743 24316 . - . ID=Physo143471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400009;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 23743 24316 . - . ID=Physo143471;Parent=Physo143471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 23743 24113 . - 0 ID=Physo143471;Parent=Physo143471;rank=2 scaffold_140 . exon 23743 24113 . - . ID=Physo143471.2;Parent=Physo143471;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 24268 24316 . - 0 ID=Physo143471;Parent=Physo143471;rank=1 scaffold_140 . exon 24268 24316 . - . ID=Physo143471.1;Parent=Physo143471;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 . repeat_region 35147 41656 . ? . description=dust scaffold_140 . repeat_region 41565 41668 . ? . description=trf scaffold_140 . repeat_region 41565 41678 . ? . description=trf scaffold_140 . repeat_region 41566 41678 . ? . description=trf scaffold_140 . repeat_region 41670 41771 . ? . description=trf scaffold_140 . repeat_region 42707 42802 . ? . description=trf scaffold_140 . repeat_region 42714 42765 . ? . description=trf scaffold_140 . repeat_region 42783 42844 . ? . description=trf scaffold_140 . repeat_region 43134 43141 . ? . description=dust scaffold_140 . repeat_region 43199 44654 . - . description=Polinton-1_PI scaffold_140 . repeat_region 46397 46406 . ? . description=dust scaffold_140 ensembl protein_coding_gene 41821 42847 . - . ID=Physo143472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400010;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 41821 42847 . - . ID=Physo143472;Parent=Physo143472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 41821 42087 . - 0 ID=Physo143472;Parent=Physo143472;rank=3 scaffold_140 . exon 41821 42087 . - . ID=Physo143472.3;Parent=Physo143472;constitutive=1;rank=3 scaffold_140 . CDS 42154 42455 . - 0 ID=Physo143472;Parent=Physo143472;rank=2 scaffold_140 . exon 42154 42455 . - . ID=Physo143472.2;Parent=Physo143472;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 42477 42765 . - 0 ID=Physo143472;Parent=Physo143472;rank=1 scaffold_140 . exon 42477 42847 . - . ID=Physo143472.1;Parent=Physo143472;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_140 . repeat_region 57594 58925 . ? . description=trf scaffold_140 . biological_region 62102 62103 0.999 + . logic_name=eponine scaffold_140 . repeat_region 62331 62340 . ? . description=dust scaffold_140 . biological_region 63991 63993 0.999 + . logic_name=eponine scaffold_140 . biological_region 64165 64170 0.999 - . logic_name=eponine scaffold_140 . biological_region 64518 64524 0.999 - . logic_name=eponine scaffold_140 ensembl protein_coding_gene 56935 57417 . - . ID=Physo143473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400011;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 56935 57417 . - . ID=Physo143473;Parent=Physo143473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 56935 57417 . - 0 ID=Physo143473;Parent=Physo143473;rank=1 scaffold_140 . exon 56935 57417 . - . ID=Physo143473.1;Parent=Physo143473;constitutive=1;rank=1 scaffold_140 . biological_region 79883 79885 0.999 + . logic_name=eponine scaffold_140 . biological_region 79912 79912 0.999 - . logic_name=eponine scaffold_140 . repeat_region 82204 82211 . ? . description=dust scaffold_140 . biological_region 82858 82861 0.999 + . logic_name=eponine scaffold_140 . biological_region 82957 82959 0.999 + . logic_name=eponine scaffold_140 . repeat_region 84811 84850 . ? . description=trf scaffold_140 ensembl protein_coding_gene 77224 79425 . + . ID=Physo143474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400012;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 77224 79425 . + . ID=Physo143474;Parent=Physo143474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . exon 77224 78305 . + . ID=Physo143474.1;Parent=Physo143474;constitutive=1;ensembl_phase=-1;rank=1 scaffold_140 . CDS 77265 78305 . + 0 ID=Physo143474;Parent=Physo143474;rank=1 scaffold_140 . CDS 78383 78768 . + 0 ID=Physo143474;Parent=Physo143474;rank=2 scaffold_140 . exon 78383 78768 . + . ID=Physo143474.2;Parent=Physo143474;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_140 . CDS 78798 78812 . + 0 ID=Physo143474;Parent=Physo143474;rank=3 scaffold_140 . exon 78798 78812 . + . ID=Physo143474.3;Parent=Physo143474;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_140 . CDS 78920 78989 . + 0 ID=Physo143474;Parent=Physo143474;rank=4 scaffold_140 . exon 78920 79334 . + . ID=Physo143474.4;Parent=Physo143474;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_140 . exon 79402 79425 . + . ID=Physo143474.5;Parent=Physo143474;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_140 ensembl protein_coding_gene 80148 81574 . - . ID=Physo143475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400013;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 80148 81574 . - . ID=Physo143475;Parent=Physo143475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 80148 80229 . - 0 ID=Physo143475;Parent=Physo143475;rank=5 scaffold_140 . exon 80148 80229 . - . ID=Physo143475.5;Parent=Physo143475;constitutive=1;ensembl_phase=2;rank=5 scaffold_140 . CDS 80300 80454 . - 0 ID=Physo143475;Parent=Physo143475;rank=4 scaffold_140 . exon 80300 80454 . - . ID=Physo143475.4;Parent=Physo143475;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_140 . CDS 80727 80969 . - 0 ID=Physo143475;Parent=Physo143475;rank=3 scaffold_140 . exon 80727 80969 . - . ID=Physo143475.3;Parent=Physo143475;constitutive=1;rank=3 scaffold_140 . CDS 81087 81539 . - 0 ID=Physo143475;Parent=Physo143475;rank=2 scaffold_140 . exon 81087 81539 . - . ID=Physo143475.2;Parent=Physo143475;constitutive=1;rank=2 scaffold_140 . CDS 81563 81574 . - 0 ID=Physo143475;Parent=Physo143475;rank=1 scaffold_140 . exon 81563 81574 . - . ID=Physo143475.1;Parent=Physo143475;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 83085 84261 . - . ID=Physo143476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400014;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 83085 84261 . - . ID=Physo143476;Parent=Physo143476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 83085 83102 . - 0 ID=Physo143476;Parent=Physo143476;rank=4 scaffold_140 . exon 83085 83102 . - . ID=Physo143476.4;Parent=Physo143476;constitutive=1;rank=4 scaffold_140 . CDS 83322 83548 . - 0 ID=Physo143476;Parent=Physo143476;rank=3 scaffold_140 . exon 83322 83548 . - . ID=Physo143476.3;Parent=Physo143476;constitutive=1;ensembl_phase=1;rank=3 scaffold_140 . CDS 83850 84204 . - 0 ID=Physo143476;Parent=Physo143476;rank=2 scaffold_140 . exon 83850 84204 . - . ID=Physo143476.2;Parent=Physo143476;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_140 . CDS 84235 84261 . - 0 ID=Physo143476;Parent=Physo143476;rank=1 scaffold_140 . exon 84235 84261 . - . ID=Physo143476.1;Parent=Physo143476;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 86226 87748 . + . ID=Physo143477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400015;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 86226 87748 . + . ID=Physo143477;Parent=Physo143477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 86226 86832 . + 0 ID=Physo143477;Parent=Physo143477;rank=1 scaffold_140 . exon 86226 86832 . + . ID=Physo143477.1;Parent=Physo143477;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 . CDS 86876 86974 . + 0 ID=Physo143477;Parent=Physo143477;rank=2 scaffold_140 . exon 86876 86974 . + . ID=Physo143477.2;Parent=Physo143477;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_140 . CDS 86997 87748 . + 0 ID=Physo143477;Parent=Physo143477;rank=3 scaffold_140 . exon 86997 87748 . + . ID=Physo143477.3;Parent=Physo143477;constitutive=1;ensembl_phase=1;rank=3 scaffold_140 ensembl protein_coding_gene 87823 88749 . - . ID=Physo143478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400016;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 87823 88749 . - . ID=Physo143478;Parent=Physo143478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . exon 87823 88141 . - . ID=Physo143478.2;Parent=Physo143478;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_140 . CDS 87920 88141 . - 0 ID=Physo143478;Parent=Physo143478;rank=2 scaffold_140 . CDS 88186 88749 . - 0 ID=Physo143478;Parent=Physo143478;rank=1 scaffold_140 . exon 88186 88749 . - . ID=Physo143478.1;Parent=Physo143478;constitutive=1;rank=1 scaffold_140 . repeat_region 97560 97609 . ? . description=dust scaffold_140 . biological_region 97839 97841 0.999 + . logic_name=eponine scaffold_140 . biological_region 97884 97887 0.999 - . logic_name=eponine scaffold_140 . biological_region 98616 98625 0.999 - . logic_name=eponine scaffold_140 . repeat_region 98641 98651 . ? . description=dust scaffold_140 . repeat_region 101404 101453 . ? . description=dust scaffold_140 ensembl protein_coding_gene 96944 98289 . - . ID=Physo143479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400017;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 96944 98289 . - . ID=Physo143479;Parent=Physo143479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 96944 96966 . - 0 ID=Physo143479;Parent=Physo143479;rank=6 scaffold_140 . exon 96944 96966 . - . ID=Physo143479.6;Parent=Physo143479;constitutive=1;ensembl_phase=1;rank=6 scaffold_140 . CDS 97069 97135 . - 0 ID=Physo143479;Parent=Physo143479;rank=5 scaffold_140 . exon 97069 97135 . - . ID=Physo143479.5;Parent=Physo143479;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_140 . CDS 97156 97503 . - 0 ID=Physo143479;Parent=Physo143479;rank=4 scaffold_140 . exon 97156 97503 . - . ID=Physo143479.4;Parent=Physo143479;constitutive=1;rank=4 scaffold_140 . CDS 97612 97967 . - 0 ID=Physo143479;Parent=Physo143479;rank=3 scaffold_140 . exon 97612 97967 . - . ID=Physo143479.3;Parent=Physo143479;constitutive=1;ensembl_phase=1;rank=3 scaffold_140 . CDS 98101 98131 . - 0 ID=Physo143479;Parent=Physo143479;rank=2 scaffold_140 . exon 98101 98131 . - . ID=Physo143479.2;Parent=Physo143479;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_140 . CDS 98209 98289 . - 0 ID=Physo143479;Parent=Physo143479;rank=1 scaffold_140 . exon 98209 98289 . - . ID=Physo143479.1;Parent=Physo143479;constitutive=1;rank=1 scaffold_140 ensembl protein_coding_gene 102808 105070 . - . ID=Physo143480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400018;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 102808 105070 . - . ID=Physo143480;Parent=Physo143480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 102808 103072 . - 0 ID=Physo143480;Parent=Physo143480;rank=8 scaffold_140 . exon 102808 103072 . - . ID=Physo143480.8;Parent=Physo143480;constitutive=1;ensembl_phase=2;rank=8 scaffold_140 . CDS 103102 103241 . - 0 ID=Physo143480;Parent=Physo143480;rank=7 scaffold_140 . exon 103102 103241 . - . ID=Physo143480.7;Parent=Physo143480;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_140 . CDS 103408 103567 . - 0 ID=Physo143480;Parent=Physo143480;rank=6 scaffold_140 . exon 103408 103567 . - . ID=Physo143480.6;Parent=Physo143480;constitutive=1;ensembl_phase=2;rank=6 scaffold_140 . CDS 103623 103827 . - 0 ID=Physo143480;Parent=Physo143480;rank=5 scaffold_140 . exon 103623 103827 . - . ID=Physo143480.5;Parent=Physo143480;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_140 . CDS 104130 104208 . - 0 ID=Physo143480;Parent=Physo143480;rank=4 scaffold_140 . CDS 104380 104679 . - 0 ID=Physo143480;Parent=Physo143480;rank=3 scaffold_140 . CDS 104729 104960 . - 0 ID=Physo143480;Parent=Physo143480;rank=2 scaffold_140 . CDS 104997 105070 . - 0 ID=Physo143480;Parent=Physo143480;rank=1 scaffold_140 . exon 104130 104208 . - . ID=Physo143480.4;Parent=Physo143480;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_140 . exon 104380 104679 . - . ID=Physo143480.3;Parent=Physo143480;constitutive=1;rank=3 scaffold_140 . exon 104729 104960 . - . ID=Physo143480.2;Parent=Physo143480;constitutive=1;ensembl_phase=2;rank=2 scaffold_140 . exon 104997 105070 . - . ID=Physo143480.1;Parent=Physo143480;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_140 ensembl protein_coding_gene 105459 107201 . + . ID=Physo143481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400019;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 105459 107201 . + . ID=Physo143481;Parent=Physo143481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 105459 105822 . + 0 ID=Physo143481;Parent=Physo143481;rank=1 scaffold_140 . exon 105459 105822 . + . ID=Physo143481.1;Parent=Physo143481;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_140 . CDS 106006 107201 . + 0 ID=Physo143481;Parent=Physo143481;rank=2 scaffold_140 . exon 106006 107201 . + . ID=Physo143481.2;Parent=Physo143481;constitutive=1;ensembl_phase=1;rank=2 scaffold_140 ensembl protein_coding_gene 110611 112629 . - . ID=Physo143482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400020;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 110611 112629 . - . ID=Physo143482;Parent=Physo143482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 110611 110867 . - 0 ID=Physo143482;Parent=Physo143482;rank=3 scaffold_140 . exon 110611 110867 . - . ID=Physo143482.3;Parent=Physo143482;constitutive=1;ensembl_phase=1;rank=3 scaffold_140 . CDS 111153 111627 . - 0 ID=Physo143482;Parent=Physo143482;rank=2 scaffold_140 . exon 111153 111627 . - . ID=Physo143482.2;Parent=Physo143482;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_140 . CDS 112573 112629 . - 0 ID=Physo143482;Parent=Physo143482;rank=1 scaffold_140 . exon 112573 112629 . - . ID=Physo143482.1;Parent=Physo143482;constitutive=1;rank=1 scaffold_140 . repeat_region 113337 121459 . ? . description=dust scaffold_140 . biological_region 121551 121553 0.999 + . logic_name=eponine scaffold_140 . biological_region 121577 121581 0.999 - . logic_name=eponine scaffold_140 . biological_region 121731 121733 0.999 + . logic_name=eponine scaffold_140 . biological_region 121895 121898 0.999 - . logic_name=eponine scaffold_140 . biological_region 122139 122145 0.999 + . logic_name=eponine scaffold_140 . biological_region 122164 122169 0.999 + . logic_name=eponine scaffold_140 . biological_region 122202 122209 0.999 - . logic_name=eponine scaffold_140 . biological_region 122217 122221 0.999 + . logic_name=eponine scaffold_140 . biological_region 122325 122328 0.999 - . logic_name=eponine scaffold_140 . biological_region 122406 122409 0.999 + . logic_name=eponine scaffold_140 . biological_region 122440 122442 0.999 - . logic_name=eponine scaffold_140 . biological_region 122593 122596 0.999 - . logic_name=eponine scaffold_140 . repeat_region 122642 122764 . ? . description=trf scaffold_140 . repeat_region 122647 122778 . ? . description=trf scaffold_140 . biological_region 122651 122655 0.999 + . logic_name=eponine scaffold_140 ensembl protein_coding_gene 121716 123672 . - . ID=Physo143483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400021;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 121716 123672 . - . ID=Physo143483;Parent=Physo143483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 121716 121769 . - 0 ID=Physo143483;Parent=Physo143483;rank=2 scaffold_140 . exon 121716 121769 . - . ID=Physo143483.2;Parent=Physo143483;constitutive=1;rank=2 scaffold_140 . CDS 121885 123672 . - 0 ID=Physo143483;Parent=Physo143483;rank=1 scaffold_140 . exon 121885 123672 . - . ID=Physo143483.1;Parent=Physo143483;constitutive=1;rank=1 scaffold_140 . repeat_region 127500 127573 . + . description=Sola3-3_PS scaffold_140 ensembl protein_coding_gene 126235 127291 . - . ID=Physo143484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400022;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 126235 127291 . - . ID=Physo143484;Parent=Physo143484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 126235 126266 . - 0 ID=Physo143484;Parent=Physo143484;rank=4 scaffold_140 . exon 126235 126266 . - . ID=Physo143484.4;Parent=Physo143484;constitutive=1;ensembl_phase=1;rank=4 scaffold_140 . CDS 126364 126806 . - 0 ID=Physo143484;Parent=Physo143484;rank=3 scaffold_140 . exon 126364 126806 . - . ID=Physo143484.3;Parent=Physo143484;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_140 . CDS 126835 126873 . - 0 ID=Physo143484;Parent=Physo143484;rank=2 scaffold_140 . exon 126835 126873 . - . ID=Physo143484.2;Parent=Physo143484;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_140 . CDS 126900 127291 . - 0 ID=Physo143484;Parent=Physo143484;rank=1 scaffold_140 . exon 126900 127291 . - . ID=Physo143484.1;Parent=Physo143484;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_140 . biological_region 132775 132776 0.999 + . logic_name=eponine scaffold_140 . biological_region 136141 136141 0.999 + . logic_name=eponine scaffold_140 . repeat_region 138734 138746 . ? . description=dust scaffold_140 . repeat_region 139080 139219 . ? . description=dust scaffold_140 . repeat_region 139805 139812 . ? . description=dust scaffold_140 . repeat_region 140356 140454 . ? . description=trf scaffold_140 . repeat_region 140369 140429 . ? . description=dust scaffold_140 . repeat_region 140393 140454 . ? . description=trf scaffold_140 . repeat_region 140393 140497 . ? . description=trf scaffold_140 . repeat_region 140434 140473 . ? . description=trf scaffold_140 ensembl protein_coding_gene 132711 135973 . - . ID=Physo143485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1400023;logic_name=jgi_physo1_1 scaffold_140 ensembl transcript 132711 135973 . - . ID=Physo143485;Parent=Physo143485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_140 . CDS 132711 133513 . - 0 ID=Physo143485;Parent=Physo143485;rank=5 scaffold_140 . exon 132711 133513 . - . ID=Physo143485.5;Parent=Physo143485;constitutive=1;ensembl_phase=1;rank=5 scaffold_140 . CDS 133869 134480 . - 0 ID=Physo143485;Parent=Physo143485;rank=4 scaffold_140 . exon 133869 134480 . - . ID=Physo143485.4;Parent=Physo143485;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_140 . CDS 134604 134715 . - 0 ID=Physo143485;Parent=Physo143485;rank=3 scaffold_140 . exon 134604 134715 . - . ID=Physo143485.3;Parent=Physo143485;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_140 . CDS 134904 135252 . - 0 ID=Physo143485;Parent=Physo143485;rank=2 scaffold_140 . exon 134904 135252 . - . ID=Physo143485.2;Parent=Physo143485;constitutive=1;ensembl_phase=2;rank=2 scaffold_140 . CDS 135324 135973 . - 0 ID=Physo143485;Parent=Physo143485;rank=1 scaffold_140 . exon 135324 135973 . - . ID=Physo143485.1;Parent=Physo143485;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_136 1 144335 scaffold_136 . repeat_region 1292 3904 . ? . description=dust scaffold_136 . repeat_region 6770 9195 . ? . description=dust scaffold_136 ensembl protein_coding_gene 783 1121 . - . ID=Physo143329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360001;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 783 1121 . - . ID=Physo143329;Parent=Physo143329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 783 1121 . - 0 ID=Physo143329;Parent=Physo143329;rank=1 scaffold_136 . exon 783 1121 . - . ID=Physo143329.1;Parent=Physo143329;constitutive=1;rank=1 scaffold_136 . biological_region 15822 15823 0.999 - . logic_name=eponine scaffold_136 . biological_region 16868 16872 0.999 - . logic_name=eponine scaffold_136 . repeat_region 17452 17508 . ? . description=trf scaffold_136 ensembl protein_coding_gene 10944 11282 . - . ID=Physo143330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360002;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 10944 11282 . - . ID=Physo143330;Parent=Physo143330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 10944 11282 . - 0 ID=Physo143330;Parent=Physo143330;rank=1 scaffold_136 . exon 10944 11282 . - . ID=Physo143330.1;Parent=Physo143330;constitutive=1;rank=1 scaffold_136 ensembl protein_coding_gene 11600 12292 . + . ID=Physo143331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360003;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 11600 12292 . + . ID=Physo143331;Parent=Physo143331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 11600 11642 . + 0 ID=Physo143331;Parent=Physo143331;rank=1 scaffold_136 . exon 11600 11642 . + . ID=Physo143331.1;Parent=Physo143331;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_136 . CDS 11682 12292 . + 0 ID=Physo143331;Parent=Physo143331;rank=2 scaffold_136 . exon 11682 12292 . + . ID=Physo143331.2;Parent=Physo143331;constitutive=1;ensembl_phase=1;rank=2 scaffold_136 . repeat_region 24539 24587 . ? . description=dust scaffold_136 . repeat_region 25550 25581 . ? . description=dust scaffold_136 ensembl protein_coding_gene 22117 24366 . - . ID=Physo143332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360004;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 22117 24366 . - . ID=Physo143332;Parent=Physo143332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 22117 22783 . - 0 ID=Physo143332;Parent=Physo143332;rank=2 scaffold_136 . exon 22117 22783 . - . ID=Physo143332.2;Parent=Physo143332;constitutive=1;ensembl_phase=2;rank=2 scaffold_136 . CDS 22820 24366 . - 0 ID=Physo143332;Parent=Physo143332;rank=1 scaffold_136 . exon 22820 24366 . - . ID=Physo143332.1;Parent=Physo143332;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_136 ensembl protein_coding_gene 25290 28010 . + . ID=Physo143333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360005;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 25290 28010 . + . ID=Physo143333;Parent=Physo143333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 25290 25351 . + 0 ID=Physo143333;Parent=Physo143333;rank=1 scaffold_136 . exon 25290 25351 . + . ID=Physo143333.1;Parent=Physo143333;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_136 . CDS 25531 26505 . + 0 ID=Physo143333;Parent=Physo143333;rank=2 scaffold_136 . exon 25531 26505 . + . ID=Physo143333.2;Parent=Physo143333;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_136 . CDS 26525 28010 . + 0 ID=Physo143333;Parent=Physo143333;rank=3 scaffold_136 . exon 26525 28010 . + . ID=Physo143333.3;Parent=Physo143333;constitutive=1;ensembl_phase=2;rank=3 scaffold_136 . repeat_region 33519 33541 . ? . description=trf scaffold_136 . biological_region 34940 34947 0.999 - . logic_name=eponine scaffold_136 . biological_region 36149 36151 0.999 + . logic_name=eponine scaffold_136 . repeat_region 42123 42177 . ? . description=dust scaffold_136 . repeat_region 47434 47488 . ? . description=dust scaffold_136 ensembl protein_coding_gene 43318 46882 . - . ID=Physo143334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360006;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 43318 46882 . - . ID=Physo143334;Parent=Physo143334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . exon 43318 46882 . - . ID=Physo143334.1;Parent=Physo143334;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_136 . CDS 43559 46765 . - 0 ID=Physo143334;Parent=Physo143334;rank=1 scaffold_136 . biological_region 48438 48439 0.999 - . logic_name=eponine scaffold_136 . biological_region 48492 48495 0.999 + . logic_name=eponine scaffold_136 . biological_region 48674 48680 0.999 - . logic_name=eponine scaffold_136 . biological_region 48679 48683 0.999 + . logic_name=eponine scaffold_136 . biological_region 48708 48712 0.999 + . logic_name=eponine scaffold_136 . biological_region 48772 48775 0.999 - . logic_name=eponine scaffold_136 . biological_region 48829 48832 0.999 + . logic_name=eponine scaffold_136 . biological_region 48865 48868 0.999 + . logic_name=eponine scaffold_136 . biological_region 48888 48903 0.999 - . logic_name=eponine scaffold_136 . biological_region 48904 48907 0.999 + . logic_name=eponine scaffold_136 . biological_region 48924 48932 0.999 - . logic_name=eponine scaffold_136 . biological_region 49008 49013 0.999 - . logic_name=eponine scaffold_136 . biological_region 49060 49068 0.999 + . logic_name=eponine scaffold_136 . biological_region 49086 49089 0.999 + . logic_name=eponine scaffold_136 . biological_region 49191 49197 0.999 - . logic_name=eponine scaffold_136 . repeat_region 53652 53730 . ? . description=trf scaffold_136 . repeat_region 53655 53730 . ? . description=trf scaffold_136 . repeat_region 55769 55813 . ? . description=trf scaffold_136 . repeat_region 55965 57126 . ? . description=trf scaffold_136 . repeat_region 55965 57736 . ? . description=trf scaffold_136 . biological_region 56127 56129 0.999 - . logic_name=eponine scaffold_136 . repeat_region 56182 56208 . ? . description=trf scaffold_136 . biological_region 56421 56424 0.999 - . logic_name=eponine scaffold_136 . biological_region 56580 56582 0.999 - . logic_name=eponine scaffold_136 . repeat_region 56635 56673 . ? . description=trf scaffold_136 . biological_region 56886 56889 0.999 - . logic_name=eponine scaffold_136 . biological_region 57045 57047 0.999 - . logic_name=eponine scaffold_136 . repeat_region 57100 57147 . ? . description=trf scaffold_136 . repeat_region 57100 57147 . + . description=(CTG)n scaffold_136 . biological_region 57360 57363 0.999 - . logic_name=eponine scaffold_136 . biological_region 57519 57521 0.999 - . logic_name=eponine scaffold_136 . repeat_region 57574 57606 . ? . description=trf scaffold_136 ensembl protein_coding_gene 54839 58438 . - . ID=Physo143335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360007;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 54839 58438 . - . ID=Physo143335;Parent=Physo143335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 54839 58438 . - 0 ID=Physo143335;Parent=Physo143335;rank=1 scaffold_136 . exon 54839 58438 . - . ID=Physo143335.1;Parent=Physo143335;constitutive=1;rank=1 scaffold_136 . repeat_region 58037 58062 . ? . description=dust scaffold_136 . repeat_region 65912 65930 . ? . description=dust scaffold_136 ensembl protein_coding_gene 64828 66146 . - . ID=Physo143336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360008;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 64828 66146 . - . ID=Physo143336;Parent=Physo143336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 64828 64841 . - 0 ID=Physo143336;Parent=Physo143336;rank=3 scaffold_136 . exon 64828 64841 . - . ID=Physo143336.3;Parent=Physo143336;constitutive=1;ensembl_phase=1;rank=3 scaffold_136 . CDS 65039 65474 . - 0 ID=Physo143336;Parent=Physo143336;rank=2 scaffold_136 . exon 65039 65474 . - . ID=Physo143336.2;Parent=Physo143336;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_136 . CDS 65565 66146 . - 0 ID=Physo143336;Parent=Physo143336;rank=1 scaffold_136 . exon 65565 66146 . - . ID=Physo143336.1;Parent=Physo143336;constitutive=1;rank=1 scaffold_136 . biological_region 69662 69665 0.999 - . logic_name=eponine scaffold_136 . biological_region 69718 69722 0.999 + . logic_name=eponine scaffold_136 . repeat_region 70087 70177 . ? . description=trf scaffold_136 . biological_region 73091 73093 0.999 - . logic_name=eponine scaffold_136 . biological_region 73570 73574 0.999 + . logic_name=eponine scaffold_136 . biological_region 73612 73614 0.999 + . logic_name=eponine scaffold_136 . biological_region 73622 73622 0.999 - . logic_name=eponine scaffold_136 . biological_region 73662 73665 0.999 - . logic_name=eponine scaffold_136 . biological_region 73676 73678 0.999 + . logic_name=eponine scaffold_136 . biological_region 73717 73719 0.999 - . logic_name=eponine scaffold_136 . biological_region 73994 73995 0.999 + . logic_name=eponine scaffold_136 . repeat_region 74037 74239 . ? . description=trf scaffold_136 . biological_region 76579 76582 0.999 - . logic_name=eponine scaffold_136 ensembl protein_coding_gene 72596 73761 . - . ID=Physo143337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360009;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 72596 73761 . - . ID=Physo143337;Parent=Physo143337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 72596 72955 . - 0 ID=Physo143337;Parent=Physo143337;rank=3 scaffold_136 . exon 72596 72955 . - . ID=Physo143337.3;Parent=Physo143337;constitutive=1;rank=3 scaffold_136 . CDS 73006 73143 . - 0 ID=Physo143337;Parent=Physo143337;rank=2 scaffold_136 . exon 73006 73143 . - . ID=Physo143337.2;Parent=Physo143337;constitutive=1;rank=2 scaffold_136 . CDS 73204 73761 . - 0 ID=Physo143337;Parent=Physo143337;rank=1 scaffold_136 . exon 73204 73761 . - . ID=Physo143337.1;Parent=Physo143337;constitutive=1;rank=1 scaffold_136 ensembl protein_coding_gene 76220 77696 . + . ID=Physo143338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360010;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 76220 77696 . + . ID=Physo143338;Parent=Physo143338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 76220 76266 . + 0 ID=Physo143338;Parent=Physo143338;rank=1 scaffold_136 . exon 76220 76266 . + . ID=Physo143338.1;Parent=Physo143338;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_136 . CDS 76342 76848 . + 0 ID=Physo143338;Parent=Physo143338;rank=2 scaffold_136 . exon 76342 76848 . + . ID=Physo143338.2;Parent=Physo143338;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_136 . CDS 76929 77221 . + 0 ID=Physo143338;Parent=Physo143338;rank=3 scaffold_136 . exon 76929 77221 . + . ID=Physo143338.3;Parent=Physo143338;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_136 . CDS 77293 77696 . + 0 ID=Physo143338;Parent=Physo143338;rank=4 scaffold_136 . repeat_region 83030 83038 . ? . description=dust scaffold_136 . repeat_region 84335 84348 . ? . description=dust scaffold_136 . exon 77293 77696 . + . ID=Physo143338.4;Parent=Physo143338;constitutive=1;ensembl_phase=1;rank=4 scaffold_136 ensembl protein_coding_gene 78185 83092 . + . ID=Physo143339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360011;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 78185 83092 . + . ID=Physo143339;Parent=Physo143339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 78185 81947 . + 0 ID=Physo143339;Parent=Physo143339;rank=1 scaffold_136 . exon 78185 81947 . + . ID=Physo143339.1;Parent=Physo143339;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_136 . CDS 82065 82948 . + 0 ID=Physo143339;Parent=Physo143339;rank=2 scaffold_136 . exon 82065 83092 . + . ID=Physo143339.2;Parent=Physo143339;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_136 ensembl protein_coding_gene 83093 84023 . - . ID=Physo143340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360012;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 83093 84023 . - . ID=Physo143340;Parent=Physo143340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . exon 83093 83326 . - . ID=Physo143340.2;Parent=Physo143340;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_136 . CDS 83094 83326 . - 0 ID=Physo143340;Parent=Physo143340;rank=2 scaffold_136 . CDS 83412 84021 . - 0 ID=Physo143340;Parent=Physo143340;rank=1 scaffold_136 . exon 83412 84023 . - . ID=Physo143340.1;Parent=Physo143340;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_136 . biological_region 89531 89533 0.999 - . logic_name=eponine scaffold_136 . biological_region 90512 90514 0.999 - . logic_name=eponine scaffold_136 . biological_region 92125 92129 0.999 - . logic_name=eponine scaffold_136 . biological_region 92975 92979 0.999 - . logic_name=eponine scaffold_136 . biological_region 94598 94602 0.999 - . logic_name=eponine scaffold_136 . biological_region 94612 94616 0.999 - . logic_name=eponine scaffold_136 ensembl protein_coding_gene 93309 94323 . - . ID=Physo123704;biotype=protein_coding;external_name=estExt_Genewise1.C_1360021;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 93309 94323 . - . ID=Physo123704;Parent=Physo123704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . exon 93309 93501 . - . ID=Physo123704.5;Parent=Physo123704;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_136 . CDS 93325 93501 . - 0 ID=Physo123704;Parent=Physo123704;rank=5 scaffold_136 . CDS 93582 93644 . - 0 ID=Physo123704;Parent=Physo123704;rank=4 scaffold_136 . exon 93582 93644 . - . ID=Physo123704.4;Parent=Physo123704;constitutive=1;rank=4 scaffold_136 . CDS 93729 93788 . - 0 ID=Physo123704;Parent=Physo123704;rank=3 scaffold_136 . exon 93729 93788 . - . ID=Physo123704.3;Parent=Physo123704;constitutive=1;rank=3 scaffold_136 . CDS 93888 93979 . - 0 ID=Physo123704;Parent=Physo123704;rank=2 scaffold_136 . exon 93888 93979 . - . ID=Physo123704.2;Parent=Physo123704;constitutive=1;ensembl_phase=1;rank=2 scaffold_136 . CDS 94060 94321 . - 0 ID=Physo123704;Parent=Physo123704;rank=1 scaffold_136 . exon 94060 94323 . - . ID=Physo123704.1;Parent=Physo123704;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_136 ensembl protein_coding_gene 89940 93294 . + . ID=Physo143341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360013;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 89940 93294 . + . ID=Physo143341;Parent=Physo143341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . exon 89940 90172 . + . ID=Physo143341.1;Parent=Physo143341;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_136 . CDS 90061 90172 . + 0 ID=Physo143341;Parent=Physo143341;rank=1 scaffold_136 . CDS 90276 93208 . + 0 ID=Physo143341;Parent=Physo143341;rank=2 scaffold_136 . exon 90276 93294 . + . ID=Physo143341.2;Parent=Physo143341;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_136 ensembl protein_coding_gene 94446 95725 . + . ID=Physo143343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360015;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 94446 95725 . + . ID=Physo143343;Parent=Physo143343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 94446 94481 . + 0 ID=Physo143343;Parent=Physo143343;rank=1 scaffold_136 . exon 94446 94481 . + . ID=Physo143343.1;Parent=Physo143343;constitutive=1;rank=1 scaffold_136 . CDS 94524 94961 . + 0 ID=Physo143343;Parent=Physo143343;rank=2 scaffold_136 . exon 94524 94961 . + . ID=Physo143343.2;Parent=Physo143343;constitutive=1;rank=2 scaffold_136 . CDS 95049 95138 . + 0 ID=Physo143343;Parent=Physo143343;rank=3 scaffold_136 . exon 95049 95138 . + . ID=Physo143343.3;Parent=Physo143343;constitutive=1;rank=3 scaffold_136 . CDS 95218 95475 . + 0 ID=Physo143343;Parent=Physo143343;rank=4 scaffold_136 . exon 95218 95475 . + . ID=Physo143343.4;Parent=Physo143343;constitutive=1;rank=4 scaffold_136 . CDS 95549 95725 . + 0 ID=Physo143343;Parent=Physo143343;rank=5 scaffold_136 . exon 95549 95725 . + . ID=Physo143343.5;Parent=Physo143343;constitutive=1;rank=5 scaffold_136 ensembl protein_coding_gene 95953 97437 . - . ID=Physo143344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360016;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 95953 97437 . - . ID=Physo143344;Parent=Physo143344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 95953 97437 . - 0 ID=Physo143344;Parent=Physo143344;rank=1 scaffold_136 . exon 95953 97437 . - . ID=Physo143344.1;Parent=Physo143344;constitutive=1;rank=1 scaffold_136 . repeat_region 96297 96355 . ? . description=trf scaffold_136 . repeat_region 98281 98330 . ? . description=trf scaffold_136 . repeat_region 100506 100530 . ? . description=trf scaffold_136 . repeat_region 101367 101411 . ? . description=trf scaffold_136 . repeat_region 102799 102807 . ? . description=dust scaffold_136 . repeat_region 104736 104755 . ? . description=dust scaffold_136 ensembl protein_coding_gene 98202 100619 . - . ID=Physo143345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360017;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 98202 100619 . - . ID=Physo143345;Parent=Physo143345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 98202 100619 . - 0 ID=Physo143345;Parent=Physo143345;rank=1 scaffold_136 . exon 98202 100619 . - . ID=Physo143345.1;Parent=Physo143345;constitutive=1;rank=1 scaffold_136 . biological_region 110143 110144 0.999 - . logic_name=eponine scaffold_136 . biological_region 112958 112962 0.999 + . logic_name=eponine scaffold_136 . biological_region 113172 113173 0.999 + . logic_name=eponine scaffold_136 . biological_region 113416 113420 0.999 - . logic_name=eponine scaffold_136 ensembl protein_coding_gene 110011 110589 . + . ID=Physo143346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360018;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 110011 110589 . + . ID=Physo143346;Parent=Physo143346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 110011 110589 . + 0 ID=Physo143346;Parent=Physo143346;rank=1 scaffold_136 . exon 110011 110589 . + . ID=Physo143346.1;Parent=Physo143346;constitutive=1;rank=1 scaffold_136 . repeat_region 123234 123280 . ? . description=trf scaffold_136 . repeat_region 124080 124104 . ? . description=trf scaffold_136 ensembl protein_coding_gene 116228 116993 . + . ID=Physo143347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360019;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 116228 116993 . + . ID=Physo143347;Parent=Physo143347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 116228 116249 . + 0 ID=Physo143347;Parent=Physo143347;rank=1 scaffold_136 . exon 116228 116249 . + . ID=Physo143347.1;Parent=Physo143347;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_136 . CDS 116296 116993 . + 0 ID=Physo143347;Parent=Physo143347;rank=2 scaffold_136 . exon 116296 116993 . + . ID=Physo143347.2;Parent=Physo143347;constitutive=1;ensembl_phase=1;rank=2 scaffold_136 ensembl protein_coding_gene 117375 118011 . + . ID=Physo143348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360020;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 117375 118011 . + . ID=Physo143348;Parent=Physo143348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 117375 117648 . + 0 ID=Physo143348;Parent=Physo143348;rank=1 scaffold_136 . exon 117375 117648 . + . ID=Physo143348.1;Parent=Physo143348;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_136 . CDS 117686 118011 . + 0 ID=Physo143348;Parent=Physo143348;rank=2 scaffold_136 . exon 117686 118011 . + . ID=Physo143348.2;Parent=Physo143348;constitutive=1;ensembl_phase=1;rank=2 scaffold_136 ensembl protein_coding_gene 121457 123303 . - . ID=Physo143349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360021;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 121457 123303 . - . ID=Physo143349;Parent=Physo143349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 121457 121864 . - 0 ID=Physo143349;Parent=Physo143349;rank=5 scaffold_136 . exon 121457 121864 . - . ID=Physo143349.5;Parent=Physo143349;constitutive=1;rank=5 scaffold_136 . CDS 121965 122080 . - 0 ID=Physo143349;Parent=Physo143349;rank=4 scaffold_136 . exon 121965 122080 . - . ID=Physo143349.4;Parent=Physo143349;constitutive=1;ensembl_phase=1;rank=4 scaffold_136 . CDS 122238 122688 . - 0 ID=Physo143349;Parent=Physo143349;rank=3 scaffold_136 . exon 122238 122688 . - . ID=Physo143349.3;Parent=Physo143349;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_136 . CDS 122859 122954 . - 0 ID=Physo143349;Parent=Physo143349;rank=2 scaffold_136 . exon 122859 122954 . - . ID=Physo143349.2;Parent=Physo143349;constitutive=1;rank=2 scaffold_136 . CDS 123274 123303 . - 0 ID=Physo143349;Parent=Physo143349;rank=1 scaffold_136 . exon 123274 123303 . - . ID=Physo143349.1;Parent=Physo143349;constitutive=1;rank=1 scaffold_136 . biological_region 126980 126985 0.999 + . logic_name=eponine scaffold_136 . biological_region 127016 127023 0.999 + . logic_name=eponine scaffold_136 . repeat_region 127831 127881 . ? . description=dust scaffold_136 . repeat_region 130084 130247 . + . description=Sola3-1_PS scaffold_136 . repeat_region 131249 131302 . ? . description=dust scaffold_136 . repeat_region 132930 132948 . ? . description=dust scaffold_136 . repeat_region 133365 133373 . ? . description=dust scaffold_136 . repeat_region 135120 135174 . ? . description=trf scaffold_136 . repeat_region 135175 135303 . ? . description=trf scaffold_136 ensembl protein_coding_gene 138753 139388 . - . ID=Physo143350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360022;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 138753 139388 . - . ID=Physo143350;Parent=Physo143350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 138753 139006 . - 0 ID=Physo143350;Parent=Physo143350;rank=2 scaffold_136 . exon 138753 139006 . - . ID=Physo143350.2;Parent=Physo143350;constitutive=1;ensembl_phase=1;rank=2 scaffold_136 . CDS 139052 139388 . - 0 ID=Physo143350;Parent=Physo143350;rank=1 scaffold_136 . exon 139052 139388 . - . ID=Physo143350.1;Parent=Physo143350;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_136 ensembl protein_coding_gene 143176 144327 . - . ID=Physo143351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1360023;logic_name=jgi_physo1_1 scaffold_136 ensembl transcript 143176 144327 . - . ID=Physo143351;Parent=Physo143351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_136 . CDS 143176 144327 . - 0 ID=Physo143351;Parent=Physo143351;rank=1 scaffold_136 . exon 143176 144327 . - . ID=Physo143351.1;Parent=Physo143351;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_138 1 149301 scaffold_138 . repeat_region 3 723 . - . description=GypsyPi-1c_I-int scaffold_138 . repeat_region 362 444 . ? . description=trf scaffold_138 . repeat_region 364 494 . ? . description=trf scaffold_138 . repeat_region 476 642 . ? . description=trf scaffold_138 . repeat_region 724 1415 . ? . description=dust scaffold_138 . repeat_region 1416 1459 . - . description=GypsyPi-1c_I-int scaffold_138 . repeat_region 1460 1643 . - . description=GypsyPi-1c_LTR scaffold_138 . repeat_region 1741 1800 . ? . description=trf scaffold_138 . repeat_region 1806 1988 . + . description=GypsyPi-1c_LTR scaffold_138 . repeat_region 1989 8797 . + . description=GypsyPi-1c_I-int scaffold_138 . biological_region 2232 2236 0.999 + . logic_name=eponine scaffold_138 . biological_region 2490 2492 0.999 + . logic_name=eponine scaffold_138 . biological_region 2509 2512 0.999 - . logic_name=eponine scaffold_138 . repeat_region 3836 3998 . ? . description=trf scaffold_138 . repeat_region 3980 4047 . ? . description=trf scaffold_138 . repeat_region 4030 4112 . ? . description=trf scaffold_138 . biological_region 5017 5017 0.999 - . logic_name=eponine scaffold_138 . biological_region 6721 6725 0.999 - . logic_name=eponine scaffold_138 . biological_region 7405 7408 0.999 + . logic_name=eponine scaffold_138 . biological_region 7454 7459 0.999 + . logic_name=eponine scaffold_138 . biological_region 8876 8877 0.999 - . logic_name=eponine scaffold_138 . biological_region 9235 9240 0.999 - . logic_name=eponine scaffold_138 . repeat_region 9366 9688 . + . description=GypsyPi-1c_I-int scaffold_138 . biological_region 9433 9436 0.999 - . logic_name=eponine scaffold_138 . repeat_region 9810 9992 . + . description=GypsyPi-1c_LTR scaffold_138 ensembl protein_coding_gene 2076 7015 . + . ID=Physo143390;biotype=protein_coding;description=Reverse transcriptase [Source:UniProtKB/TrEMBL%3BAcc:Q0Q536];external_name=estExt_fgenesh1_pg.C_1380001;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 2076 7015 . + . ID=Physo143390;Parent=Physo143390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 2076 3085 . + 0 ID=Physo143390;Parent=Physo143390;rank=1 scaffold_138 . exon 2076 3085 . + . ID=Physo143390.1;Parent=Physo143390;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_138 . CDS 3121 4102 . + 0 ID=Physo143390;Parent=Physo143390;rank=2 scaffold_138 . exon 3121 4102 . + . ID=Physo143390.2;Parent=Physo143390;constitutive=1;ensembl_phase=2;rank=2 scaffold_138 . CDS 4180 6960 . + 0 ID=Physo143390;Parent=Physo143390;rank=3 scaffold_138 . exon 4180 6960 . + . ID=Physo143390.3;Parent=Physo143390;constitutive=1;rank=3 scaffold_138 . CDS 7007 7015 . + 0 ID=Physo143390;Parent=Physo143390;rank=4 scaffold_138 . exon 7007 7015 . + . ID=Physo143390.4;Parent=Physo143390;constitutive=1;rank=4 scaffold_138 ensembl protein_coding_gene 7298 9502 . - . ID=Physo143391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380002;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 7298 9502 . - . ID=Physo143391;Parent=Physo143391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 7298 9502 . - 0 ID=Physo143391;Parent=Physo143391;rank=1 scaffold_138 . exon 7298 9502 . - . ID=Physo143391.1;Parent=Physo143391;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 10358 10753 . + . ID=Physo143392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380003;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 10358 10753 . + . ID=Physo143392;Parent=Physo143392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 10358 10753 . + 0 ID=Physo143392;Parent=Physo143392;rank=1 scaffold_138 . exon 10358 10753 . + . ID=Physo143392.1;Parent=Physo143392;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 12640 13476 . - . ID=Physo143393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380004;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 12640 13476 . - . ID=Physo143393;Parent=Physo143393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 12640 13443 . - 0 ID=Physo143393;Parent=Physo143393;rank=1 scaffold_138 . exon 12640 13476 . - . ID=Physo143393.1;Parent=Physo143393;constitutive=1;ensembl_phase=-1;rank=1 scaffold_138 ensembl protein_coding_gene 16894 19095 . - . ID=Physo143394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380005;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 16894 19095 . - . ID=Physo143394;Parent=Physo143394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 16894 19095 . - 0 ID=Physo143394;Parent=Physo143394;rank=1 scaffold_138 . exon 16894 19095 . - . ID=Physo143394.1;Parent=Physo143394;constitutive=1;rank=1 scaffold_138 . biological_region 20749 20751 0.999 + . logic_name=eponine scaffold_138 . biological_region 21535 21539 0.999 - . logic_name=eponine scaffold_138 . biological_region 21591 21595 0.999 + . logic_name=eponine scaffold_138 . biological_region 21770 21770 0.999 - . logic_name=eponine scaffold_138 . biological_region 21804 21810 0.999 + . logic_name=eponine scaffold_138 . biological_region 22647 22650 0.999 + . logic_name=eponine scaffold_138 . biological_region 22660 22664 0.999 + . logic_name=eponine scaffold_138 . biological_region 22757 22766 0.999 - . logic_name=eponine scaffold_138 . biological_region 22782 22784 0.999 - . logic_name=eponine scaffold_138 . biological_region 22793 22795 0.999 - . logic_name=eponine scaffold_138 . biological_region 22813 22820 0.999 + . logic_name=eponine scaffold_138 . biological_region 22838 22838 0.999 + . logic_name=eponine scaffold_138 . biological_region 22846 22848 0.999 + . logic_name=eponine scaffold_138 . biological_region 22889 22890 0.999 + . logic_name=eponine scaffold_138 . biological_region 23082 23085 0.999 + . logic_name=eponine scaffold_138 . biological_region 23111 23115 0.999 - . logic_name=eponine scaffold_138 . biological_region 23153 23154 0.999 - . logic_name=eponine scaffold_138 . biological_region 23172 23174 0.999 - . logic_name=eponine scaffold_138 . repeat_region 23498 23574 . ? . description=dust scaffold_138 . repeat_region 23511 23556 . ? . description=trf scaffold_138 . repeat_region 23543 23573 . ? . description=trf scaffold_138 . repeat_region 23545 23574 . ? . description=trf scaffold_138 . biological_region 27593 27596 0.999 + . logic_name=eponine scaffold_138 ensembl protein_coding_gene 20066 20927 . - . ID=Physo143395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380006;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 20066 20927 . - . ID=Physo143395;Parent=Physo143395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 20066 20920 . - 0 ID=Physo143395;Parent=Physo143395;rank=1 scaffold_138 . exon 20066 20927 . - . ID=Physo143395.1;Parent=Physo143395;constitutive=1;ensembl_phase=-1;rank=1 scaffold_138 ensembl protein_coding_gene 21134 22165 . - . ID=Physo143396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380007;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 21134 22165 . - . ID=Physo143396;Parent=Physo143396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 21134 22165 . - 0 ID=Physo143396;Parent=Physo143396;rank=1 scaffold_138 . exon 21134 22165 . - . ID=Physo143396.1;Parent=Physo143396;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 22538 26409 . + . ID=Physo143397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380008;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 22538 26409 . + . ID=Physo143397;Parent=Physo143397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 22538 22765 . + 0 ID=Physo143397;Parent=Physo143397;rank=1 scaffold_138 . exon 22538 22765 . + . ID=Physo143397.1;Parent=Physo143397;constitutive=1;rank=1 scaffold_138 . CDS 22852 26409 . + 0 ID=Physo143397;Parent=Physo143397;rank=2 scaffold_138 . exon 22852 26409 . + . ID=Physo143397.2;Parent=Physo143397;constitutive=1;rank=2 scaffold_138 ensembl protein_coding_gene 26562 29408 . - . ID=Physo143398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380009;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 26562 29408 . - . ID=Physo143398;Parent=Physo143398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 26562 26993 . - 0 ID=Physo143398;Parent=Physo143398;rank=6 scaffold_138 . exon 26562 26993 . - . ID=Physo143398.6;Parent=Physo143398;constitutive=1;rank=6 scaffold_138 . CDS 27096 27811 . - 0 ID=Physo143398;Parent=Physo143398;rank=5 scaffold_138 . exon 27096 27811 . - . ID=Physo143398.5;Parent=Physo143398;constitutive=1;ensembl_phase=1;rank=5 scaffold_138 . CDS 27949 27994 . - 0 ID=Physo143398;Parent=Physo143398;rank=4 scaffold_138 . exon 27949 27994 . - . ID=Physo143398.4;Parent=Physo143398;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_138 . CDS 28323 29174 . - 0 ID=Physo143398;Parent=Physo143398;rank=3 scaffold_138 . exon 28323 29174 . - . ID=Physo143398.3;Parent=Physo143398;constitutive=1;rank=3 scaffold_138 . CDS 29294 29297 . - 0 ID=Physo143398;Parent=Physo143398;rank=2 scaffold_138 . exon 29294 29297 . - . ID=Physo143398.2;Parent=Physo143398;constitutive=1;ensembl_phase=2;rank=2 scaffold_138 . CDS 29359 29408 . - 0 ID=Physo143398;Parent=Physo143398;rank=1 scaffold_138 . exon 29359 29408 . - . ID=Physo143398.1;Parent=Physo143398;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_138 ensembl protein_coding_gene 29650 32887 . + . ID=Physo143399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380010;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 29650 32887 . + . ID=Physo143399;Parent=Physo143399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 29650 30693 . + 0 ID=Physo143399;Parent=Physo143399;rank=1 scaffold_138 . exon 29650 30693 . + . ID=Physo143399.1;Parent=Physo143399;constitutive=1;rank=1 scaffold_138 . CDS 30769 30891 . + 0 ID=Physo143399;Parent=Physo143399;rank=2 scaffold_138 . CDS 30965 32887 . + 0 ID=Physo143399;Parent=Physo143399;rank=3 scaffold_138 . exon 30769 30891 . + . ID=Physo143399.2;Parent=Physo143399;constitutive=1;rank=2 scaffold_138 . exon 30965 32887 . + . ID=Physo143399.3;Parent=Physo143399;constitutive=1;rank=3 scaffold_138 ensembl protein_coding_gene 37714 39375 . - . ID=Physo143400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380011;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 37714 39375 . - . ID=Physo143400;Parent=Physo143400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 37714 39375 . - 0 ID=Physo143400;Parent=Physo143400;rank=1 scaffold_138 . exon 37714 39375 . - . ID=Physo143400.1;Parent=Physo143400;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 39776 41203 . - . ID=Physo143401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380012;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 39776 41203 . - . ID=Physo143401;Parent=Physo143401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 39776 41203 . - 0 ID=Physo143401;Parent=Physo143401;rank=1 scaffold_138 . exon 39776 41203 . - . ID=Physo143401.1;Parent=Physo143401;constitutive=1;rank=1 scaffold_138 . biological_region 40734 40738 0.999 - . logic_name=eponine scaffold_138 . biological_region 40737 40741 0.999 + . logic_name=eponine scaffold_138 . biological_region 40758 40768 0.999 + . logic_name=eponine scaffold_138 . biological_region 40788 40793 0.999 + . logic_name=eponine scaffold_138 . biological_region 40812 40818 0.999 + . logic_name=eponine scaffold_138 . biological_region 40855 40863 0.999 + . logic_name=eponine scaffold_138 . repeat_region 40876 40895 . ? . description=dust scaffold_138 . biological_region 40894 40898 0.999 + . logic_name=eponine scaffold_138 . biological_region 40907 40907 0.999 - . logic_name=eponine scaffold_138 . biological_region 40927 40930 0.999 + . logic_name=eponine scaffold_138 . biological_region 40928 40932 0.999 - . logic_name=eponine scaffold_138 . biological_region 40956 40962 0.999 - . logic_name=eponine scaffold_138 . repeat_region 41401 41409 . ? . description=dust scaffold_138 . biological_region 41529 41543 0.999 + . logic_name=eponine scaffold_138 . biological_region 41553 41558 0.999 - . logic_name=eponine scaffold_138 . biological_region 41636 41641 0.999 - . logic_name=eponine scaffold_138 . repeat_region 41811 41851 . ? . description=dust scaffold_138 . repeat_region 43349 43361 . ? . description=dust scaffold_138 . biological_region 46302 46305 0.999 + . logic_name=eponine scaffold_138 . repeat_region 46501 46577 . ? . description=trf scaffold_138 . biological_region 47604 47607 0.999 - . logic_name=eponine scaffold_138 ensembl protein_coding_gene 44122 44948 . + . ID=Physo109557;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1380001;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 44122 44948 . + . ID=Physo109557;Parent=Physo109557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 44122 44441 . + 0 ID=Physo109557;Parent=Physo109557;rank=1 scaffold_138 . exon 44122 44441 . + . ID=Physo109557.1;Parent=Physo109557;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_138 . CDS 44518 44654 . + 0 ID=Physo109557;Parent=Physo109557;rank=2 scaffold_138 . exon 44518 44654 . + . ID=Physo109557.2;Parent=Physo109557;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_138 . CDS 44730 44941 . + 0 ID=Physo109557;Parent=Physo109557;rank=3 scaffold_138 . exon 44730 44948 . + . ID=Physo109557.3;Parent=Physo109557;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_138 ensembl protein_coding_gene 41463 42311 . + . ID=Physo143402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380013;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 41463 42311 . + . ID=Physo143402;Parent=Physo143402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 41463 42311 . + 0 ID=Physo143402;Parent=Physo143402;rank=1 scaffold_138 . exon 41463 42311 . + . ID=Physo143402.1;Parent=Physo143402;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 45060 47054 . - . ID=Physo143404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380015;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 45060 47054 . - . ID=Physo143404;Parent=Physo143404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 45060 46858 . - 0 ID=Physo143404;Parent=Physo143404;rank=2 scaffold_138 . exon 45060 46858 . - . ID=Physo143404.2;Parent=Physo143404;constitutive=1;ensembl_phase=1;rank=2 scaffold_138 . CDS 47033 47054 . - 0 ID=Physo143404;Parent=Physo143404;rank=1 scaffold_138 . exon 47033 47054 . - . ID=Physo143404.1;Parent=Physo143404;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_138 ensembl protein_coding_gene 47193 47969 . + . ID=Physo143405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380016;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 47193 47969 . + . ID=Physo143405;Parent=Physo143405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 47193 47969 . + 0 ID=Physo143405;Parent=Physo143405;rank=1 scaffold_138 . exon 47193 47969 . + . ID=Physo143405.1;Parent=Physo143405;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 51127 52039 . - . ID=Physo143406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380017;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 51127 52039 . - . ID=Physo143406;Parent=Physo143406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 51127 51141 . - 0 ID=Physo143406;Parent=Physo143406;rank=2 scaffold_138 . exon 51127 51141 . - . ID=Physo143406.2;Parent=Physo143406;constitutive=1;rank=2 scaffold_138 . CDS 51182 52039 . - 0 ID=Physo143406;Parent=Physo143406;rank=1 scaffold_138 . exon 51182 52039 . - . ID=Physo143406.1;Parent=Physo143406;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 52522 53022 . + . ID=Physo143407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380018;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 52522 53022 . + . ID=Physo143407;Parent=Physo143407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 52522 52650 . + 0 ID=Physo143407;Parent=Physo143407;rank=1 scaffold_138 . exon 52522 52650 . + . ID=Physo143407.1;Parent=Physo143407;constitutive=1;rank=1 scaffold_138 . CDS 52711 53022 . + 0 ID=Physo143407;Parent=Physo143407;rank=2 scaffold_138 . exon 52711 53022 . + . ID=Physo143407.2;Parent=Physo143407;constitutive=1;rank=2 scaffold_138 ensembl protein_coding_gene 53121 54685 . - . ID=Physo143408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380019;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 53121 54685 . - . ID=Physo143408;Parent=Physo143408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 53121 53168 . - 0 ID=Physo143408;Parent=Physo143408;rank=2 scaffold_138 . exon 53121 53168 . - . ID=Physo143408.2;Parent=Physo143408;constitutive=1;rank=2 scaffold_138 . CDS 53360 54685 . - 0 ID=Physo143408;Parent=Physo143408;rank=1 scaffold_138 . exon 53360 54685 . - . ID=Physo143408.1;Parent=Physo143408;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 55166 55911 . + . ID=Physo143409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380020;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 55166 55911 . + . ID=Physo143409;Parent=Physo143409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 55166 55763 . + 0 ID=Physo143409;Parent=Physo143409;rank=1 scaffold_138 . exon 55166 55763 . + . ID=Physo143409.1;Parent=Physo143409;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_138 . CDS 55889 55911 . + 0 ID=Physo143409;Parent=Physo143409;rank=2 scaffold_138 . exon 55889 55911 . + . ID=Physo143409.2;Parent=Physo143409;constitutive=1;ensembl_phase=1;rank=2 scaffold_138 ensembl protein_coding_gene 59207 61221 . + . ID=Physo143410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380021;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 59207 61221 . + . ID=Physo143410;Parent=Physo143410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 59207 61184 . + 0 ID=Physo143410;Parent=Physo143410;rank=1 scaffold_138 . exon 59207 61184 . + . ID=Physo143410.1;Parent=Physo143410;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_138 . CDS 61217 61221 . + 0 ID=Physo143410;Parent=Physo143410;rank=2 scaffold_138 . biological_region 63167 63173 0.999 + . logic_name=eponine scaffold_138 . biological_region 63607 63609 0.999 + . logic_name=eponine scaffold_138 . biological_region 64429 64433 0.999 - . logic_name=eponine scaffold_138 . biological_region 64967 64967 0.999 - . logic_name=eponine scaffold_138 . biological_region 66156 66158 0.999 - . logic_name=eponine scaffold_138 . repeat_region 66905 66924 . ? . description=trf scaffold_138 . biological_region 67057 67059 0.999 + . logic_name=eponine scaffold_138 . biological_region 67797 67797 0.999 + . logic_name=eponine scaffold_138 . biological_region 68506 68510 0.999 + . logic_name=eponine scaffold_138 . biological_region 68734 68734 0.999 - . logic_name=eponine scaffold_138 . biological_region 69173 69176 0.999 + . logic_name=eponine scaffold_138 . biological_region 69467 69472 0.999 + . logic_name=eponine scaffold_138 . biological_region 69485 69489 0.999 + . logic_name=eponine scaffold_138 . biological_region 69540 69541 0.999 - . logic_name=eponine scaffold_138 . biological_region 69561 69563 0.999 + . logic_name=eponine scaffold_138 ensembl protein_coding_gene 62936 64439 . + . ID=Physo109558;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1380002;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 62936 64439 . + . ID=Physo109558;Parent=Physo109558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . exon 62936 64439 . + . ID=Physo109558.1;Parent=Physo109558;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_138 . CDS 62984 64369 . + 0 ID=Physo109558;Parent=Physo109558;rank=1 scaffold_138 ensembl protein_coding_gene 65352 66516 . + . ID=Physo109559;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1380003;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 65352 66516 . + . ID=Physo109559;Parent=Physo109559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 65352 65545 . + 0 ID=Physo109559;Parent=Physo109559;rank=1 scaffold_138 . exon 65352 65545 . + . ID=Physo109559.1;Parent=Physo109559;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_138 . CDS 65641 65704 . + 0 ID=Physo109559;Parent=Physo109559;rank=2 scaffold_138 . exon 65641 65704 . + . ID=Physo109559.2;Parent=Physo109559;constitutive=1;ensembl_phase=2;rank=2 scaffold_138 . CDS 65736 65792 . + 0 ID=Physo109559;Parent=Physo109559;rank=3 scaffold_138 . exon 65736 65792 . + . ID=Physo109559.3;Parent=Physo109559;constitutive=1;rank=3 scaffold_138 . CDS 65815 66516 . + 0 ID=Physo109559;Parent=Physo109559;rank=4 scaffold_138 . exon 65815 66516 . + . ID=Physo109559.4;Parent=Physo109559;constitutive=1;rank=4 scaffold_138 . exon 61217 61221 . + . ID=Physo143410.2;Parent=Physo143410;constitutive=1;ensembl_phase=1;rank=2 scaffold_138 ensembl protein_coding_gene 61557 62815 . - . ID=Physo143411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380022;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 61557 62815 . - . ID=Physo143411;Parent=Physo143411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 61557 62538 . - 0 ID=Physo143411;Parent=Physo143411;rank=2 scaffold_138 . exon 61557 62538 . - . ID=Physo143411.2;Parent=Physo143411;constitutive=1;ensembl_phase=2;rank=2 scaffold_138 . CDS 62628 62815 . - 0 ID=Physo143411;Parent=Physo143411;rank=1 scaffold_138 . exon 62628 62815 . - . ID=Physo143411.1;Parent=Physo143411;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_138 ensembl protein_coding_gene 66623 67474 . - . ID=Physo143414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380025;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 66623 67474 . - . ID=Physo143414;Parent=Physo143414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 66623 67474 . - 0 ID=Physo143414;Parent=Physo143414;rank=1 scaffold_138 . exon 66623 67474 . - . ID=Physo143414.1;Parent=Physo143414;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 69202 71091 . + . ID=Physo143415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380026;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 69202 71091 . + . ID=Physo143415;Parent=Physo143415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 69202 70878 . + 0 ID=Physo143415;Parent=Physo143415;rank=1 scaffold_138 . exon 69202 71091 . + . ID=Physo143415.1;Parent=Physo143415;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_138 . repeat_region 73131 73138 . ? . description=dust scaffold_138 . repeat_region 77562 77569 . ? . description=dust scaffold_138 . repeat_region 79120 79145 . ? . description=dust scaffold_138 ensembl protein_coding_gene 76841 79020 . + . ID=Physo143417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380028;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 76841 79020 . + . ID=Physo143417;Parent=Physo143417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 76841 78047 . + 0 ID=Physo143417;Parent=Physo143417;rank=1 scaffold_138 . exon 76841 78047 . + . ID=Physo143417.1;Parent=Physo143417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_138 . CDS 78200 79020 . + 0 ID=Physo143417;Parent=Physo143417;rank=2 scaffold_138 . exon 78200 79020 . + . ID=Physo143417.2;Parent=Physo143417;constitutive=1;ensembl_phase=1;rank=2 scaffold_138 ensembl protein_coding_gene 79249 87339 . + . ID=Physo143418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380029;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 79249 87339 . + . ID=Physo143418;Parent=Physo143418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 79249 87339 . + 0 ID=Physo143418;Parent=Physo143418;rank=1 scaffold_138 . exon 79249 87339 . + . ID=Physo143418.1;Parent=Physo143418;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 71245 73006 . + . ID=Physo158766;biotype=protein_coding;external_name=C_scaffold_138000009;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 71245 73006 . + . ID=Physo158766;Parent=Physo158766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 71245 72131 . + 0 ID=Physo158766;Parent=Physo158766;rank=1 scaffold_138 . exon 71245 72131 . + . ID=Physo158766.1;Parent=Physo158766;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_138 . CDS 72225 72319 . + 0 ID=Physo158766;Parent=Physo158766;rank=2 scaffold_138 . exon 72225 72319 . + . ID=Physo158766.2;Parent=Physo158766;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_138 . CDS 72623 73006 . + 0 ID=Physo158766;Parent=Physo158766;rank=3 scaffold_138 . exon 72623 73006 . + . ID=Physo158766.3;Parent=Physo158766;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_138 . repeat_region 79658 79685 . ? . description=trf scaffold_138 . repeat_region 88492 88512 . ? . description=trf scaffold_138 . repeat_region 89273 89314 . ? . description=trf scaffold_138 ensembl protein_coding_gene 89239 90500 . - . ID=Physo143419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380030;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 89239 90500 . - . ID=Physo143419;Parent=Physo143419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 89239 89612 . - 0 ID=Physo143419;Parent=Physo143419;rank=5 scaffold_138 . exon 89239 89612 . - . ID=Physo143419.5;Parent=Physo143419;constitutive=1;ensembl_phase=1;rank=5 scaffold_138 . CDS 89683 89737 . - 0 ID=Physo143419;Parent=Physo143419;rank=4 scaffold_138 . CDS 89809 89959 . - 0 ID=Physo143419;Parent=Physo143419;rank=3 scaffold_138 . CDS 90034 90147 . - 0 ID=Physo143419;Parent=Physo143419;rank=2 scaffold_138 . CDS 90226 90500 . - 0 ID=Physo143419;Parent=Physo143419;rank=1 scaffold_138 . repeat_region 90609 90617 . ? . description=dust scaffold_138 . biological_region 92107 92109 0.999 - . logic_name=eponine scaffold_138 . repeat_region 92655 92662 . ? . description=dust scaffold_138 . biological_region 93242 93244 0.999 + . logic_name=eponine scaffold_138 . repeat_region 95582 95596 . ? . description=dust scaffold_138 . repeat_region 96623 96631 . ? . description=dust scaffold_138 . repeat_region 99034 99048 . ? . description=dust scaffold_138 . repeat_region 99476 99486 . ? . description=dust scaffold_138 . exon 89683 89737 . - . ID=Physo143419.4;Parent=Physo143419;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_138 . exon 89809 89959 . - . ID=Physo143419.3;Parent=Physo143419;constitutive=1;ensembl_phase=2;rank=3 scaffold_138 . exon 90034 90147 . - . ID=Physo143419.2;Parent=Physo143419;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_138 . exon 90226 90500 . - . ID=Physo143419.1;Parent=Physo143419;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_138 ensembl protein_coding_gene 90731 92281 . - . ID=Physo143420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380031;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 90731 92281 . - . ID=Physo143420;Parent=Physo143420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 90731 92281 . - 0 ID=Physo143420;Parent=Physo143420;rank=1 scaffold_138 . exon 90731 92281 . - . ID=Physo143420.1;Parent=Physo143420;constitutive=1;rank=1 scaffold_138 . repeat_region 100092 100149 . ? . description=trf scaffold_138 ensembl protein_coding_gene 103964 108178 . + . ID=Physo143421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380032;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 103964 108178 . + . ID=Physo143421;Parent=Physo143421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 103964 104567 . + 0 ID=Physo143421;Parent=Physo143421;rank=1 scaffold_138 . exon 103964 104567 . + . ID=Physo143421.1;Parent=Physo143421;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_138 . CDS 104605 104615 . + 0 ID=Physo143421;Parent=Physo143421;rank=2 scaffold_138 . exon 104605 104615 . + . ID=Physo143421.2;Parent=Physo143421;constitutive=1;ensembl_phase=1;rank=2 scaffold_138 . CDS 104695 105217 . + 0 ID=Physo143421;Parent=Physo143421;rank=3 scaffold_138 . exon 104695 105217 . + . ID=Physo143421.3;Parent=Physo143421;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_138 . CDS 105282 105547 . + 0 ID=Physo143421;Parent=Physo143421;rank=4 scaffold_138 . exon 105282 105547 . + . ID=Physo143421.4;Parent=Physo143421;constitutive=1;ensembl_phase=1;rank=4 scaffold_138 . CDS 105590 105991 . + 0 ID=Physo143421;Parent=Physo143421;rank=5 scaffold_138 . exon 105590 105991 . + . ID=Physo143421.5;Parent=Physo143421;constitutive=1;rank=5 scaffold_138 . CDS 106017 106496 . + 0 ID=Physo143421;Parent=Physo143421;rank=6 scaffold_138 . exon 106017 106496 . + . ID=Physo143421.6;Parent=Physo143421;constitutive=1;rank=6 scaffold_138 . CDS 106625 107194 . + 0 ID=Physo143421;Parent=Physo143421;rank=7 scaffold_138 . exon 106625 107194 . + . ID=Physo143421.7;Parent=Physo143421;constitutive=1;rank=7 scaffold_138 . CDS 107291 108178 . + 0 ID=Physo143421;Parent=Physo143421;rank=8 scaffold_138 . exon 107291 108178 . + . ID=Physo143421.8;Parent=Physo143421;constitutive=1;rank=8 scaffold_138 . biological_region 110839 110841 0.999 + . logic_name=eponine scaffold_138 . biological_region 111175 111177 0.999 + . logic_name=eponine scaffold_138 . biological_region 111245 111246 0.999 + . logic_name=eponine scaffold_138 . biological_region 111272 111273 0.999 - . logic_name=eponine scaffold_138 . repeat_region 111844 114211 . + . description=GypsyPi-1c_I-int scaffold_138 . biological_region 113351 113351 0.999 - . logic_name=eponine scaffold_138 . biological_region 113393 113394 0.999 - . logic_name=eponine scaffold_138 . biological_region 115326 115328 0.999 - . logic_name=eponine scaffold_138 . biological_region 115864 115872 0.999 + . logic_name=eponine scaffold_138 . biological_region 115894 115894 0.999 + . logic_name=eponine scaffold_138 . biological_region 115966 115966 0.999 - . logic_name=eponine scaffold_138 . biological_region 115982 115986 0.999 - . logic_name=eponine scaffold_138 ensembl protein_coding_gene 110527 114202 . + . ID=Physo143422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380033;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 110527 114202 . + . ID=Physo143422;Parent=Physo143422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 110527 110751 . + 0 ID=Physo143422;Parent=Physo143422;rank=1 scaffold_138 . exon 110527 110751 . + . ID=Physo143422.1;Parent=Physo143422;constitutive=1;rank=1 scaffold_138 . CDS 110792 111161 . + 0 ID=Physo143422;Parent=Physo143422;rank=2 scaffold_138 . exon 110792 111161 . + . ID=Physo143422.2;Parent=Physo143422;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_138 . CDS 111258 111856 . + 0 ID=Physo143422;Parent=Physo143422;rank=3 scaffold_138 . exon 111258 111856 . + . ID=Physo143422.3;Parent=Physo143422;constitutive=1;ensembl_phase=1;rank=3 scaffold_138 . CDS 111955 112851 . + 0 ID=Physo143422;Parent=Physo143422;rank=4 scaffold_138 . exon 111955 112851 . + . ID=Physo143422.4;Parent=Physo143422;constitutive=1;rank=4 scaffold_138 . CDS 112934 114202 . + 0 ID=Physo143422;Parent=Physo143422;rank=5 scaffold_138 . exon 112934 114202 . + . ID=Physo143422.5;Parent=Physo143422;constitutive=1;rank=5 scaffold_138 ensembl protein_coding_gene 114726 116251 . - . ID=Physo143423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380034;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 114726 116251 . - . ID=Physo143423;Parent=Physo143423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 114726 115780 . - 0 ID=Physo143423;Parent=Physo143423;rank=2 scaffold_138 . exon 114726 115780 . - . ID=Physo143423.2;Parent=Physo143423;constitutive=1;ensembl_phase=1;rank=2 scaffold_138 . CDS 115855 116251 . - 0 ID=Physo143423;Parent=Physo143423;rank=1 scaffold_138 . exon 115855 116251 . - . ID=Physo143423.1;Parent=Physo143423;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_138 ensembl protein_coding_gene 116865 119521 . + . ID=Physo143424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380035;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 116865 119521 . + . ID=Physo143424;Parent=Physo143424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 116865 117871 . + 0 ID=Physo143424;Parent=Physo143424;rank=1 scaffold_138 . exon 116865 117871 . + . ID=Physo143424.1;Parent=Physo143424;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_138 . CDS 117899 119466 . + 0 ID=Physo143424;Parent=Physo143424;rank=2 scaffold_138 . exon 117899 119466 . + . ID=Physo143424.2;Parent=Physo143424;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_138 . CDS 119496 119521 . + 0 ID=Physo143424;Parent=Physo143424;rank=3 scaffold_138 . repeat_region 121426 121457 . ? . description=dust scaffold_138 . repeat_region 121426 121465 . ? . description=trf scaffold_138 . repeat_region 121426 121465 . ? . description=trf scaffold_138 . repeat_region 122107 122117 . ? . description=dust scaffold_138 . repeat_region 123539 123588 . ? . description=dust scaffold_138 . repeat_region 128311 128353 . ? . description=dust scaffold_138 . repeat_region 129216 129226 . ? . description=dust scaffold_138 . exon 119496 119521 . + . ID=Physo143424.3;Parent=Physo143424;constitutive=1;ensembl_phase=1;rank=3 scaffold_138 ensembl protein_coding_gene 121010 121709 . - . ID=Physo143425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380036;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 121010 121709 . - . ID=Physo143425;Parent=Physo143425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . CDS 121010 121099 . - 0 ID=Physo143425;Parent=Physo143425;rank=2 scaffold_138 . exon 121010 121099 . - . ID=Physo143425.2;Parent=Physo143425;constitutive=1;rank=2 scaffold_138 . CDS 121356 121709 . - 0 ID=Physo143425;Parent=Physo143425;rank=1 scaffold_138 . exon 121356 121709 . - . ID=Physo143425.1;Parent=Physo143425;constitutive=1;rank=1 scaffold_138 ensembl protein_coding_gene 129269 129675 . - . ID=Physo143426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380037;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 129269 129675 . - . ID=Physo143426;Parent=Physo143426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . exon 129269 129675 . - . ID=Physo143426.1;Parent=Physo143426;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_138 . CDS 129321 129674 . - 0 ID=Physo143426;Parent=Physo143426;rank=1 scaffold_138 . biological_region 129574 129574 0.999 + . logic_name=eponine scaffold_138 . repeat_region 129865 142410 . ? . description=dust scaffold_138 . repeat_region 145969 145976 . ? . description=dust scaffold_138 ensembl protein_coding_gene 142534 144079 . - . ID=Physo143427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1380038;logic_name=jgi_physo1_1 scaffold_138 ensembl transcript 142534 144079 . - . ID=Physo143427;Parent=Physo143427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_138 . exon 142534 144079 . - . ID=Physo143427.1;Parent=Physo143427;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_138 . CDS 142535 144079 . - 0 ID=Physo143427;Parent=Physo143427;rank=1 ##gff-version 3 ##sequence-region scaffold_137 1 151140 scaffold_137 . repeat_region 1638 1687 . ? . description=dust scaffold_137 . biological_region 2243 2244 0.999 + . logic_name=eponine scaffold_137 . biological_region 2320 2326 0.999 - . logic_name=eponine scaffold_137 . biological_region 2683 2686 0.999 + . logic_name=eponine scaffold_137 . biological_region 2700 2701 0.999 - . logic_name=eponine scaffold_137 . biological_region 2717 2718 0.999 + . logic_name=eponine scaffold_137 . repeat_region 3883 3938 . ? . description=dust scaffold_137 . biological_region 4420 4424 0.999 - . logic_name=eponine scaffold_137 . repeat_region 6418 6445 . ? . description=trf scaffold_137 . biological_region 7300 7301 0.999 + . logic_name=eponine scaffold_137 . repeat_region 7700 7707 . ? . description=dust scaffold_137 ensembl protein_coding_gene 431 3163 . - . ID=Physo109553;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1370001;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 431 3163 . - . ID=Physo109553;Parent=Physo109553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . exon 431 752 . - . ID=Physo109553.6;Parent=Physo109553;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_137 . CDS 556 752 . - 0 ID=Physo109553;Parent=Physo109553;rank=6 scaffold_137 . CDS 893 1634 . - 0 ID=Physo109553;Parent=Physo109553;rank=5 scaffold_137 . exon 893 1634 . - . ID=Physo109553.5;Parent=Physo109553;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_137 . CDS 1751 1830 . - 0 ID=Physo109553;Parent=Physo109553;rank=4 scaffold_137 . exon 1751 1830 . - . ID=Physo109553.4;Parent=Physo109553;constitutive=1;ensembl_phase=1;rank=4 scaffold_137 . CDS 1898 2098 . - 0 ID=Physo109553;Parent=Physo109553;rank=3 scaffold_137 . exon 1898 2098 . - . ID=Physo109553.3;Parent=Physo109553;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_137 . CDS 2171 2946 . - 0 ID=Physo109553;Parent=Physo109553;rank=2 scaffold_137 . exon 2171 2946 . - . ID=Physo109553.2;Parent=Physo109553;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_137 . CDS 3024 3163 . - 0 ID=Physo109553;Parent=Physo109553;rank=1 scaffold_137 . exon 3024 3163 . - . ID=Physo109553.1;Parent=Physo109553;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_137 ensembl protein_coding_gene 4641 5681 . - . ID=Physo109554;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1370002;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 4641 5681 . - . ID=Physo109554;Parent=Physo109554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 4641 5681 . - 0 ID=Physo109554;Parent=Physo109554;rank=1 scaffold_137 . exon 4641 5681 . - . ID=Physo109554.1;Parent=Physo109554;constitutive=1;rank=1 scaffold_137 ensembl protein_coding_gene 3748 4523 . + . ID=Physo143353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370002;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 3748 4523 . + . ID=Physo143353;Parent=Physo143353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . exon 3748 4086 . + . ID=Physo143353.1;Parent=Physo143353;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_137 . CDS 3749 4086 . + 0 ID=Physo143353;Parent=Physo143353;rank=1 scaffold_137 . CDS 4172 4187 . + 0 ID=Physo143353;Parent=Physo143353;rank=2 scaffold_137 . exon 4172 4523 . + . ID=Physo143353.2;Parent=Physo143353;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_137 ensembl protein_coding_gene 8720 9701 . + . ID=Physo143355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370004;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 8720 9701 . + . ID=Physo143355;Parent=Physo143355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . exon 8720 8859 . + . ID=Physo143355.1;Parent=Physo143355;constitutive=1;ensembl_phase=-1;rank=1 scaffold_137 . CDS 8731 8859 . + 0 ID=Physo143355;Parent=Physo143355;rank=1 scaffold_137 . CDS 8931 9046 . + 0 ID=Physo143355;Parent=Physo143355;rank=2 scaffold_137 . exon 8931 9046 . + . ID=Physo143355.2;Parent=Physo143355;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_137 . CDS 9117 9231 . + 0 ID=Physo143355;Parent=Physo143355;rank=3 scaffold_137 . exon 9117 9231 . + . ID=Physo143355.3;Parent=Physo143355;constitutive=1;ensembl_phase=2;rank=3 scaffold_137 . CDS 9314 9416 . + 0 ID=Physo143355;Parent=Physo143355;rank=4 scaffold_137 . exon 9314 9416 . + . ID=Physo143355.4;Parent=Physo143355;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_137 . CDS 9485 9579 . + 0 ID=Physo143355;Parent=Physo143355;rank=5 scaffold_137 . exon 9485 9701 . + . ID=Physo143355.5;Parent=Physo143355;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_137 ensembl protein_coding_gene 9846 10583 . - . ID=Physo143356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370005;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 9846 10583 . - . ID=Physo143356;Parent=Physo143356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 9846 10583 . - 0 ID=Physo143356;Parent=Physo143356;rank=1 scaffold_137 . exon 9846 10583 . - . ID=Physo143356.1;Parent=Physo143356;constitutive=1;rank=1 scaffold_137 ensembl protein_coding_gene 12004 12697 . + . ID=Physo143357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370006;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 12004 12697 . + . ID=Physo143357;Parent=Physo143357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . exon 12004 12697 . + . ID=Physo143357.1;Parent=Physo143357;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_137 . CDS 12059 12520 . + 0 ID=Physo143357;Parent=Physo143357;rank=1 scaffold_137 ensembl protein_coding_gene 12840 14052 . + . ID=Physo143358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370007;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 12840 14052 . + . ID=Physo143358;Parent=Physo143358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 12840 12933 . + 0 ID=Physo143358;Parent=Physo143358;rank=1 scaffold_137 . exon 12840 12933 . + . ID=Physo143358.1;Parent=Physo143358;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_137 . CDS 13002 13233 . + 0 ID=Physo143358;Parent=Physo143358;rank=2 scaffold_137 . exon 13002 13233 . + . ID=Physo143358.2;Parent=Physo143358;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_137 . CDS 13312 13877 . + 0 ID=Physo143358;Parent=Physo143358;rank=3 scaffold_137 . exon 13312 13877 . + . ID=Physo143358.3;Parent=Physo143358;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_137 . CDS 14033 14052 . + 0 ID=Physo143358;Parent=Physo143358;rank=4 scaffold_137 . exon 14033 14052 . + . ID=Physo143358.4;Parent=Physo143358;constitutive=1;ensembl_phase=1;rank=4 scaffold_137 ensembl protein_coding_gene 14543 17908 . - . ID=Physo143359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370008;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 14543 17908 . - . ID=Physo143359;Parent=Physo143359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 14543 14665 . - 0 ID=Physo143359;Parent=Physo143359;rank=3 scaffold_137 . exon 14543 14665 . - . ID=Physo143359.3;Parent=Physo143359;constitutive=1;rank=3 scaffold_137 . CDS 14730 14851 . - 0 ID=Physo143359;Parent=Physo143359;rank=2 scaffold_137 . exon 14730 14851 . - . ID=Physo143359.2;Parent=Physo143359;constitutive=1;ensembl_phase=1;rank=2 scaffold_137 . CDS 14922 17880 . - 0 ID=Physo143359;Parent=Physo143359;rank=1 scaffold_137 . exon 14922 17908 . - . ID=Physo143359.1;Parent=Physo143359;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_137 . biological_region 21898 21901 0.999 - . logic_name=eponine scaffold_137 . biological_region 22602 22607 0.999 + . logic_name=eponine scaffold_137 . biological_region 22622 22624 0.999 + . logic_name=eponine scaffold_137 . biological_region 22631 22638 0.999 + . logic_name=eponine scaffold_137 . biological_region 22655 22657 0.999 + . logic_name=eponine scaffold_137 . biological_region 22701 22701 0.999 + . logic_name=eponine scaffold_137 . repeat_region 22752 22808 . ? . description=dust scaffold_137 . biological_region 23643 23645 0.999 + . logic_name=eponine scaffold_137 . repeat_region 24339 24392 . ? . description=trf scaffold_137 . biological_region 25272 25273 0.999 + . logic_name=eponine scaffold_137 . biological_region 26576 26579 0.999 + . logic_name=eponine scaffold_137 . biological_region 26614 26619 0.999 + . logic_name=eponine scaffold_137 . biological_region 26659 26664 0.999 - . logic_name=eponine scaffold_137 . repeat_region 27204 27223 . ? . description=trf scaffold_137 ensembl protein_coding_gene 28333 29459 . - . ID=Physo109555;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1370003;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 28333 29459 . - . ID=Physo109555;Parent=Physo109555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 28333 29433 . - 0 ID=Physo109555;Parent=Physo109555;rank=1 scaffold_137 . exon 28333 29459 . - . ID=Physo109555.1;Parent=Physo109555;constitutive=1;ensembl_phase=-1;rank=1 scaffold_137 ensembl protein_coding_gene 20216 22861 . - . ID=Physo143360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370009;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 20216 22861 . - . ID=Physo143360;Parent=Physo143360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 20216 22861 . - 0 ID=Physo143360;Parent=Physo143360;rank=1 scaffold_137 . exon 20216 22861 . - . ID=Physo143360.1;Parent=Physo143360;constitutive=1;rank=1 scaffold_137 ensembl protein_coding_gene 24227 27121 . - . ID=Physo143361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370010;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 24227 27121 . - . ID=Physo143361;Parent=Physo143361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 24227 27121 . - 0 ID=Physo143361;Parent=Physo143361;rank=1 scaffold_137 . exon 24227 27121 . - . ID=Physo143361.1;Parent=Physo143361;constitutive=1;rank=1 scaffold_137 ensembl protein_coding_gene 29991 31121 . + . ID=Physo109556;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1370004;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 29991 31121 . + . ID=Physo109556;Parent=Physo109556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 29991 31121 . + 0 ID=Physo109556;Parent=Physo109556;rank=1 scaffold_137 . exon 29991 31121 . + . ID=Physo109556.1;Parent=Physo109556;constitutive=1;rank=1 scaffold_137 ensembl protein_coding_gene 31241 32467 . - . ID=Physo123724;biotype=protein_coding;external_name=estExt_Genewise1.C_1370017;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 31241 32467 . - . ID=Physo123724;Parent=Physo123724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 31241 32233 . - 0 ID=Physo123724;Parent=Physo123724;rank=1 scaffold_137 . exon 31241 32467 . - . ID=Physo123724.1;Parent=Physo123724;constitutive=1;ensembl_phase=-1;rank=1 scaffold_137 ensembl protein_coding_gene 35963 37343 . + . ID=Physo143367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370016;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 35963 37343 . + . ID=Physo143367;Parent=Physo143367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 35963 36585 . + 0 ID=Physo143367;Parent=Physo143367;rank=1 scaffold_137 . exon 35963 36585 . + . ID=Physo143367.1;Parent=Physo143367;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_137 . CDS 36654 36959 . + 0 ID=Physo143367;Parent=Physo143367;rank=2 scaffold_137 . exon 36654 36959 . + . ID=Physo143367.2;Parent=Physo143367;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_137 . CDS 37010 37343 . + 0 ID=Physo143367;Parent=Physo143367;rank=3 scaffold_137 . exon 37010 37343 . + . ID=Physo143367.3;Parent=Physo143367;constitutive=1;ensembl_phase=2;rank=3 scaffold_137 ensembl protein_coding_gene 37482 37820 . - . ID=Physo143368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370017;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 37482 37820 . - . ID=Physo143368;Parent=Physo143368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 37482 37820 . - 0 ID=Physo143368;Parent=Physo143368;rank=1 scaffold_137 . exon 37482 37820 . - . ID=Physo143368.1;Parent=Physo143368;constitutive=1;rank=1 scaffold_137 ensembl protein_coding_gene 32890 34162 . + . ID=Physo158749;biotype=protein_coding;external_name=C_scaffold_137000003;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 32890 34162 . + . ID=Physo158749;Parent=Physo158749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 32890 32934 . + 0 ID=Physo158749;Parent=Physo158749;rank=1 scaffold_137 . exon 32890 32934 . + . ID=Physo158749.1;Parent=Physo158749;constitutive=1;rank=1 scaffold_137 . CDS 33019 33246 . + 0 ID=Physo158749;Parent=Physo158749;rank=2 scaffold_137 . exon 33019 33246 . + . ID=Physo158749.2;Parent=Physo158749;constitutive=1;rank=2 scaffold_137 . CDS 33303 33413 . + 0 ID=Physo158749;Parent=Physo158749;rank=3 scaffold_137 . exon 33303 33413 . + . ID=Physo158749.3;Parent=Physo158749;constitutive=1;rank=3 scaffold_137 . CDS 33497 33562 . + 0 ID=Physo158749;Parent=Physo158749;rank=4 scaffold_137 . exon 33497 33562 . + . ID=Physo158749.4;Parent=Physo158749;constitutive=1;rank=4 scaffold_137 . CDS 33637 33851 . + 0 ID=Physo158749;Parent=Physo158749;rank=5 scaffold_137 . exon 33637 33851 . + . ID=Physo158749.5;Parent=Physo158749;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_137 . CDS 33928 34162 . + 0 ID=Physo158749;Parent=Physo158749;rank=6 scaffold_137 . exon 33928 34162 . + . ID=Physo158749.6;Parent=Physo158749;constitutive=1;ensembl_phase=2;rank=6 scaffold_137 ensembl protein_coding_gene 34553 35584 . + . ID=Physo158750;biotype=protein_coding;external_name=C_scaffold_137000004;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 34553 35584 . + . ID=Physo158750;Parent=Physo158750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 34553 34716 . + 0 ID=Physo158750;Parent=Physo158750;rank=1 scaffold_137 . exon 34553 34716 . + . ID=Physo158750.1;Parent=Physo158750;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_137 . CDS 34771 35293 . + 0 ID=Physo158750;Parent=Physo158750;rank=2 scaffold_137 . exon 34771 35293 . + . ID=Physo158750.2;Parent=Physo158750;constitutive=1;ensembl_phase=2;rank=2 scaffold_137 . CDS 35318 35584 . + 0 ID=Physo158750;Parent=Physo158750;rank=3 scaffold_137 . exon 35318 35584 . + . ID=Physo158750.3;Parent=Physo158750;constitutive=1;rank=3 scaffold_137 . repeat_region 40093 40134 . ? . description=dust scaffold_137 . biological_region 40369 40371 0.999 + . logic_name=eponine scaffold_137 . biological_region 40444 40446 0.999 + . logic_name=eponine scaffold_137 . biological_region 40499 40503 0.999 + . logic_name=eponine scaffold_137 . biological_region 40535 40536 0.999 - . logic_name=eponine scaffold_137 . biological_region 40557 40558 0.999 - . logic_name=eponine scaffold_137 . biological_region 40576 40579 0.999 - . logic_name=eponine scaffold_137 . biological_region 40586 40592 0.999 + . logic_name=eponine scaffold_137 . biological_region 41015 41017 0.999 - . logic_name=eponine scaffold_137 . biological_region 41275 41276 0.999 - . logic_name=eponine scaffold_137 . repeat_region 44917 44933 . ? . description=dust scaffold_137 . repeat_region 45850 45899 . ? . description=dust scaffold_137 ensembl protein_coding_gene 38210 40056 . + . ID=Physo143369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370018;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 38210 40056 . + . ID=Physo143369;Parent=Physo143369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 38210 38275 . + 0 ID=Physo143369;Parent=Physo143369;rank=1 scaffold_137 . exon 38210 38275 . + . ID=Physo143369.1;Parent=Physo143369;constitutive=1;rank=1 scaffold_137 . CDS 38401 38550 . + 0 ID=Physo143369;Parent=Physo143369;rank=2 scaffold_137 . exon 38401 38550 . + . ID=Physo143369.2;Parent=Physo143369;constitutive=1;rank=2 scaffold_137 . CDS 38661 38912 . + 0 ID=Physo143369;Parent=Physo143369;rank=3 scaffold_137 . exon 38661 38912 . + . ID=Physo143369.3;Parent=Physo143369;constitutive=1;rank=3 scaffold_137 . CDS 38979 39257 . + 0 ID=Physo143369;Parent=Physo143369;rank=4 scaffold_137 . exon 38979 39257 . + . ID=Physo143369.4;Parent=Physo143369;constitutive=1;rank=4 scaffold_137 . CDS 39339 39980 . + 0 ID=Physo143369;Parent=Physo143369;rank=5 scaffold_137 . exon 39339 40056 . + . ID=Physo143369.5;Parent=Physo143369;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_137 ensembl protein_coding_gene 40237 42157 . + . ID=Physo143370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370019;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 40237 42157 . + . ID=Physo143370;Parent=Physo143370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 40237 41832 . + 0 ID=Physo143370;Parent=Physo143370;rank=1 scaffold_137 . exon 40237 42157 . + . ID=Physo143370.1;Parent=Physo143370;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_137 ensembl protein_coding_gene 43156 44636 . - . ID=Physo143371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370020;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 43156 44636 . - . ID=Physo143371;Parent=Physo143371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 43156 43228 . - 0 ID=Physo143371;Parent=Physo143371;rank=5 scaffold_137 . exon 43156 43228 . - . ID=Physo143371.5;Parent=Physo143371;constitutive=1;ensembl_phase=2;rank=5 scaffold_137 . CDS 43286 43796 . - 0 ID=Physo143371;Parent=Physo143371;rank=4 scaffold_137 . exon 43286 43796 . - . ID=Physo143371.4;Parent=Physo143371;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_137 . CDS 43869 43942 . - 0 ID=Physo143371;Parent=Physo143371;rank=3 scaffold_137 . exon 43869 43942 . - . ID=Physo143371.3;Parent=Physo143371;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_137 . CDS 43988 44367 . - 0 ID=Physo143371;Parent=Physo143371;rank=2 scaffold_137 . exon 43988 44367 . - . ID=Physo143371.2;Parent=Physo143371;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_137 . CDS 44415 44636 . - 0 ID=Physo143371;Parent=Physo143371;rank=1 scaffold_137 . exon 44415 44636 . - . ID=Physo143371.1;Parent=Physo143371;constitutive=1;rank=1 scaffold_137 . repeat_region 48529 48572 . ? . description=trf scaffold_137 . repeat_region 55240 55283 . ? . description=trf scaffold_137 ensembl protein_coding_gene 49968 50831 . + . ID=Physo143372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370021;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 49968 50831 . + . ID=Physo143372;Parent=Physo143372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 49968 50831 . + 0 ID=Physo143372;Parent=Physo143372;rank=1 scaffold_137 . exon 49968 50831 . + . ID=Physo143372.1;Parent=Physo143372;constitutive=1;rank=1 scaffold_137 ensembl protein_coding_gene 56679 57542 . + . ID=Physo143373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370022;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 56679 57542 . + . ID=Physo143373;Parent=Physo143373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 56679 57542 . + 0 ID=Physo143373;Parent=Physo143373;rank=1 scaffold_137 . exon 56679 57542 . + . ID=Physo143373.1;Parent=Physo143373;constitutive=1;rank=1 scaffold_137 . biological_region 61978 61980 0.999 - . logic_name=eponine scaffold_137 . biological_region 63865 63867 0.999 + . logic_name=eponine scaffold_137 ensembl protein_coding_gene 60099 62038 . - . ID=Physo143374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370023;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 60099 62038 . - . ID=Physo143374;Parent=Physo143374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 60099 60620 . - 0 ID=Physo143374;Parent=Physo143374;rank=7 scaffold_137 . exon 60099 60620 . - . ID=Physo143374.7;Parent=Physo143374;constitutive=1;rank=7 scaffold_137 . CDS 60714 60854 . - 0 ID=Physo143374;Parent=Physo143374;rank=6 scaffold_137 . exon 60714 60854 . - . ID=Physo143374.6;Parent=Physo143374;constitutive=1;rank=6 scaffold_137 . CDS 60925 60976 . - 0 ID=Physo143374;Parent=Physo143374;rank=5 scaffold_137 . exon 60925 60976 . - . ID=Physo143374.5;Parent=Physo143374;constitutive=1;ensembl_phase=2;rank=5 scaffold_137 . CDS 61061 61094 . - 0 ID=Physo143374;Parent=Physo143374;rank=4 scaffold_137 . exon 61061 61094 . - . ID=Physo143374.4;Parent=Physo143374;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_137 . CDS 61171 61577 . - 0 ID=Physo143374;Parent=Physo143374;rank=3 scaffold_137 . exon 61171 61577 . - . ID=Physo143374.3;Parent=Physo143374;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_137 . CDS 61673 61826 . - 0 ID=Physo143374;Parent=Physo143374;rank=2 scaffold_137 . exon 61673 61826 . - . ID=Physo143374.2;Parent=Physo143374;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_137 . CDS 61900 62038 . - 0 ID=Physo143374;Parent=Physo143374;rank=1 scaffold_137 . exon 61900 62038 . - . ID=Physo143374.1;Parent=Physo143374;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_137 ensembl protein_coding_gene 62143 62770 . + . ID=Physo143375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370024;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 62143 62770 . + . ID=Physo143375;Parent=Physo143375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 62143 62267 . + 0 ID=Physo143375;Parent=Physo143375;rank=1 scaffold_137 . exon 62143 62267 . + . ID=Physo143375.1;Parent=Physo143375;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_137 . CDS 62374 62770 . + 0 ID=Physo143375;Parent=Physo143375;rank=2 scaffold_137 . exon 62374 62770 . + . ID=Physo143375.2;Parent=Physo143375;constitutive=1;ensembl_phase=2;rank=2 scaffold_137 ensembl protein_coding_gene 63851 66613 . + . ID=Physo143376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370025;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 63851 66613 . + . ID=Physo143376;Parent=Physo143376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 63851 66613 . + 0 ID=Physo143376;Parent=Physo143376;rank=1 scaffold_137 . exon 63851 66613 . + . ID=Physo143376.1;Parent=Physo143376;constitutive=1;rank=1 scaffold_137 . repeat_region 66631 66643 . ? . description=dust scaffold_137 . repeat_region 67594 67604 . ? . description=dust scaffold_137 . repeat_region 67713 67721 . ? . description=dust scaffold_137 . repeat_region 67910 67918 . ? . description=dust scaffold_137 . repeat_region 72698 72710 . ? . description=dust scaffold_137 . repeat_region 73289 73298 . ? . description=dust scaffold_137 . repeat_region 73636 73643 . ? . description=dust scaffold_137 . repeat_region 73977 73984 . ? . description=dust scaffold_137 ensembl protein_coding_gene 66682 67370 . - . ID=Physo143377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370026;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 66682 67370 . - . ID=Physo143377;Parent=Physo143377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . exon 66682 67370 . - . ID=Physo143377.1;Parent=Physo143377;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_137 . CDS 66735 67370 . - 0 ID=Physo143377;Parent=Physo143377;rank=1 scaffold_137 ensembl protein_coding_gene 71017 72417 . - . ID=Physo143378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370027;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 71017 72417 . - . ID=Physo143378;Parent=Physo143378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 71017 71700 . - 0 ID=Physo143378;Parent=Physo143378;rank=3 scaffold_137 . exon 71017 71700 . - . ID=Physo143378.3;Parent=Physo143378;constitutive=1;rank=3 scaffold_137 . CDS 71777 72089 . - 0 ID=Physo143378;Parent=Physo143378;rank=2 scaffold_137 . exon 71777 72089 . - . ID=Physo143378.2;Parent=Physo143378;constitutive=1;ensembl_phase=2;rank=2 scaffold_137 . CDS 72137 72417 . - 0 ID=Physo143378;Parent=Physo143378;rank=1 scaffold_137 . exon 72137 72417 . - . ID=Physo143378.1;Parent=Physo143378;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_137 . repeat_region 77149 77191 . ? . description=trf scaffold_137 . biological_region 83987 83987 0.999 - . logic_name=eponine scaffold_137 . repeat_region 84579 84639 . ? . description=trf scaffold_137 . biological_region 84726 84730 0.999 - . logic_name=eponine scaffold_137 . repeat_region 84782 84828 . ? . description=trf scaffold_137 . biological_region 84810 84815 0.999 + . logic_name=eponine scaffold_137 . biological_region 84828 84833 0.999 - . logic_name=eponine scaffold_137 . biological_region 84857 84859 0.999 - . logic_name=eponine scaffold_137 ensembl protein_coding_gene 76052 76312 . - . ID=Physo123731;biotype=protein_coding;external_name=estExt_Genewise1.C_1370024;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 76052 76312 . - . ID=Physo123731;Parent=Physo123731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 76052 76138 . - 0 ID=Physo123731;Parent=Physo123731;rank=1 scaffold_137 . exon 76052 76312 . - . ID=Physo123731.1;Parent=Physo123731;constitutive=1;ensembl_phase=-1;rank=1 scaffold_137 . repeat_region 85176 85183 . ? . description=dust scaffold_137 . repeat_region 94209 94216 . ? . description=dust scaffold_137 ensembl protein_coding_gene 88494 92687 . - . ID=Physo143379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370028;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 88494 92687 . - . ID=Physo143379;Parent=Physo143379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 88494 90125 . - 0 ID=Physo143379;Parent=Physo143379;rank=4 scaffold_137 . exon 88494 90125 . - . ID=Physo143379.4;Parent=Physo143379;constitutive=1;rank=4 scaffold_137 . CDS 90187 90244 . - 0 ID=Physo143379;Parent=Physo143379;rank=3 scaffold_137 . exon 90187 90244 . - . ID=Physo143379.3;Parent=Physo143379;constitutive=1;ensembl_phase=2;rank=3 scaffold_137 . CDS 90273 92379 . - 0 ID=Physo143379;Parent=Physo143379;rank=2 scaffold_137 . exon 90273 92379 . - . ID=Physo143379.2;Parent=Physo143379;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_137 . CDS 92420 92687 . - 0 ID=Physo143379;Parent=Physo143379;rank=1 scaffold_137 . exon 92420 92687 . - . ID=Physo143379.1;Parent=Physo143379;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_137 . biological_region 102252 102253 0.999 + . logic_name=eponine scaffold_137 ensembl protein_coding_gene 100946 103072 . + . ID=Physo143380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370029;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 100946 103072 . + . ID=Physo143380;Parent=Physo143380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 100946 101137 . + 0 ID=Physo143380;Parent=Physo143380;rank=1 scaffold_137 . exon 100946 101137 . + . ID=Physo143380.1;Parent=Physo143380;constitutive=1;rank=1 scaffold_137 . CDS 101233 101687 . + 0 ID=Physo143380;Parent=Physo143380;rank=2 scaffold_137 . exon 101233 101687 . + . ID=Physo143380.2;Parent=Physo143380;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_137 . CDS 101900 102397 . + 0 ID=Physo143380;Parent=Physo143380;rank=3 scaffold_137 . exon 101900 102397 . + . ID=Physo143380.3;Parent=Physo143380;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_137 . CDS 102463 103072 . + 0 ID=Physo143380;Parent=Physo143380;rank=4 scaffold_137 . exon 102463 103072 . + . ID=Physo143380.4;Parent=Physo143380;constitutive=1;ensembl_phase=2;rank=4 scaffold_137 . repeat_region 107167 107175 . ? . description=dust scaffold_137 . repeat_region 107455 107479 . ? . description=trf scaffold_137 . repeat_region 110280 110289 . ? . description=dust scaffold_137 . repeat_region 110365 110384 . ? . description=trf scaffold_137 . repeat_region 112069 112076 . ? . description=dust scaffold_137 . repeat_region 113244 113269 . ? . description=dust scaffold_137 . repeat_region 122933 122941 . ? . description=dust scaffold_137 . biological_region 123531 123536 0.999 + . logic_name=eponine scaffold_137 . repeat_region 124010 124020 . ? . description=dust scaffold_137 . repeat_region 126829 127017 . ? . description=trf scaffold_137 . biological_region 128709 128713 0.999 + . logic_name=eponine scaffold_137 . biological_region 128984 128986 0.999 - . logic_name=eponine scaffold_137 . repeat_region 131923 132053 . + . description=(CTG)n scaffold_137 . repeat_region 132184 132261 . ? . description=trf scaffold_137 ensembl protein_coding_gene 124484 126587 . - . ID=Physo143381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370030;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 124484 126587 . - . ID=Physo143381;Parent=Physo143381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 124484 124505 . - 0 ID=Physo143381;Parent=Physo143381;rank=5 scaffold_137 . exon 124484 124505 . - . ID=Physo143381.5;Parent=Physo143381;constitutive=1;ensembl_phase=2;rank=5 scaffold_137 . CDS 124803 125366 . - 0 ID=Physo143381;Parent=Physo143381;rank=4 scaffold_137 . exon 124803 125366 . - . ID=Physo143381.4;Parent=Physo143381;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_137 . CDS 125555 125724 . - 0 ID=Physo143381;Parent=Physo143381;rank=3 scaffold_137 . exon 125555 125724 . - . ID=Physo143381.3;Parent=Physo143381;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_137 . CDS 125872 126134 . - 0 ID=Physo143381;Parent=Physo143381;rank=2 scaffold_137 . exon 125872 126134 . - . ID=Physo143381.2;Parent=Physo143381;constitutive=1;ensembl_phase=1;rank=2 scaffold_137 . CDS 126299 126587 . - 0 ID=Physo143381;Parent=Physo143381;rank=1 scaffold_137 . exon 126299 126587 . - . ID=Physo143381.1;Parent=Physo143381;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_137 ensembl protein_coding_gene 128539 129592 . + . ID=Physo143382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370031;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 128539 129592 . + . ID=Physo143382;Parent=Physo143382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 128539 129004 . + 0 ID=Physo143382;Parent=Physo143382;rank=1 scaffold_137 . exon 128539 129004 . + . ID=Physo143382.1;Parent=Physo143382;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_137 . CDS 129090 129592 . + 0 ID=Physo143382;Parent=Physo143382;rank=2 scaffold_137 . exon 129090 129592 . + . ID=Physo143382.2;Parent=Physo143382;constitutive=1;ensembl_phase=1;rank=2 scaffold_137 ensembl protein_coding_gene 129694 131210 . - . ID=Physo143383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370032;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 129694 131210 . - . ID=Physo143383;Parent=Physo143383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . exon 129694 129946 . - . ID=Physo143383.7;Parent=Physo143383;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_137 . CDS 129893 129946 . - 0 ID=Physo143383;Parent=Physo143383;rank=7 scaffold_137 . CDS 130043 130321 . - 0 ID=Physo143383;Parent=Physo143383;rank=6 scaffold_137 . exon 130043 130321 . - . ID=Physo143383.6;Parent=Physo143383;constitutive=1;rank=6 scaffold_137 . CDS 130420 130515 . - 0 ID=Physo143383;Parent=Physo143383;rank=5 scaffold_137 . exon 130420 130515 . - . ID=Physo143383.5;Parent=Physo143383;constitutive=1;rank=5 scaffold_137 . CDS 130591 130638 . - 0 ID=Physo143383;Parent=Physo143383;rank=4 scaffold_137 . exon 130591 130638 . - . ID=Physo143383.4;Parent=Physo143383;constitutive=1;rank=4 scaffold_137 . CDS 130727 130774 . - 0 ID=Physo143383;Parent=Physo143383;rank=3 scaffold_137 . exon 130727 130774 . - . ID=Physo143383.3;Parent=Physo143383;constitutive=1;rank=3 scaffold_137 . CDS 130864 130936 . - 0 ID=Physo143383;Parent=Physo143383;rank=2 scaffold_137 . exon 130864 130936 . - . ID=Physo143383.2;Parent=Physo143383;constitutive=1;ensembl_phase=2;rank=2 scaffold_137 . CDS 131045 131058 . - 0 ID=Physo143383;Parent=Physo143383;rank=1 scaffold_137 . exon 131045 131210 . - . ID=Physo143383.1;Parent=Physo143383;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_137 ensembl protein_coding_gene 131404 140959 . + . ID=Physo158752;biotype=protein_coding;external_name=C_scaffold_137000006;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 131404 140959 . + . ID=Physo158752;Parent=Physo158752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 131404 131560 . + 0 ID=Physo158752;Parent=Physo158752;rank=1 scaffold_137 . exon 131404 131560 . + . ID=Physo158752.1;Parent=Physo158752;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_137 . CDS 131696 132138 . + 0 ID=Physo158752;Parent=Physo158752;rank=2 scaffold_137 . exon 131696 132138 . + . ID=Physo158752.2;Parent=Physo158752;constitutive=1;ensembl_phase=1;rank=2 scaffold_137 . CDS 132365 132868 . + 0 ID=Physo158752;Parent=Physo158752;rank=3 scaffold_137 . CDS 132899 133272 . + 0 ID=Physo158752;Parent=Physo158752;rank=4 scaffold_137 . CDS 133524 133554 . + 0 ID=Physo158752;Parent=Physo158752;rank=5 scaffold_137 . CDS 133632 133726 . + 0 ID=Physo158752;Parent=Physo158752;rank=6 scaffold_137 . CDS 133796 134081 . + 0 ID=Physo158752;Parent=Physo158752;rank=7 scaffold_137 . CDS 134476 134686 . + 0 ID=Physo158752;Parent=Physo158752;rank=8 scaffold_137 . CDS 134781 134839 . + 0 ID=Physo158752;Parent=Physo158752;rank=9 scaffold_137 . CDS 134956 135165 . + 0 ID=Physo158752;Parent=Physo158752;rank=10 scaffold_137 . CDS 135241 135284 . + 0 ID=Physo158752;Parent=Physo158752;rank=11 scaffold_137 . CDS 135362 135534 . + 0 ID=Physo158752;Parent=Physo158752;rank=12 scaffold_137 . CDS 135617 135804 . + 0 ID=Physo158752;Parent=Physo158752;rank=13 scaffold_137 . CDS 135875 135975 . + 0 ID=Physo158752;Parent=Physo158752;rank=14 scaffold_137 . CDS 136054 136091 . + 0 ID=Physo158752;Parent=Physo158752;rank=15 scaffold_137 . CDS 136162 136253 . + 0 ID=Physo158752;Parent=Physo158752;rank=16 scaffold_137 . CDS 136330 136732 . + 0 ID=Physo158752;Parent=Physo158752;rank=17 scaffold_137 . CDS 136804 136888 . + 0 ID=Physo158752;Parent=Physo158752;rank=18 scaffold_137 . CDS 137128 137419 . + 0 ID=Physo158752;Parent=Physo158752;rank=19 scaffold_137 . CDS 137500 137709 . + 0 ID=Physo158752;Parent=Physo158752;rank=20 scaffold_137 . CDS 137764 137916 . + 0 ID=Physo158752;Parent=Physo158752;rank=21 scaffold_137 . CDS 137984 138275 . + 0 ID=Physo158752;Parent=Physo158752;rank=22 scaffold_137 . CDS 138459 138590 . + 0 ID=Physo158752;Parent=Physo158752;rank=23 scaffold_137 . CDS 138648 140959 . + 0 ID=Physo158752;Parent=Physo158752;rank=24 scaffold_137 . exon 132365 132868 . + . ID=Physo158752.3;Parent=Physo158752;constitutive=1;rank=3 scaffold_137 . exon 132899 133272 . + . ID=Physo158752.4;Parent=Physo158752;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_137 . exon 133524 133554 . + . ID=Physo158752.5;Parent=Physo158752;constitutive=1;ensembl_phase=2;rank=5 scaffold_137 . exon 133632 133726 . + . ID=Physo158752.6;Parent=Physo158752;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_137 . exon 133796 134081 . + . ID=Physo158752.7;Parent=Physo158752;constitutive=1;ensembl_phase=2;rank=7 scaffold_137 . exon 134476 134686 . + . ID=Physo158752.8;Parent=Physo158752;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_137 . exon 134781 134839 . + . ID=Physo158752.9;Parent=Physo158752;constitutive=1;ensembl_phase=1;rank=9 scaffold_137 . exon 134956 135165 . + . ID=Physo158752.10;Parent=Physo158752;constitutive=1;rank=10 scaffold_137 . exon 135241 135284 . + . ID=Physo158752.11;Parent=Physo158752;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_137 . exon 135362 135534 . + . ID=Physo158752.12;Parent=Physo158752;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_137 . exon 135617 135804 . + . ID=Physo158752.13;Parent=Physo158752;constitutive=1;ensembl_phase=1;rank=13 scaffold_137 . exon 135875 135975 . + . ID=Physo158752.14;Parent=Physo158752;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_137 . exon 136054 136091 . + . ID=Physo158752.15;Parent=Physo158752;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=15 scaffold_137 . exon 136162 136253 . + . ID=Physo158752.16;Parent=Physo158752;constitutive=1;ensembl_phase=1;rank=16 scaffold_137 . exon 136330 136732 . + . ID=Physo158752.17;Parent=Physo158752;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_137 . exon 136804 136888 . + . ID=Physo158752.18;Parent=Physo158752;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=18 scaffold_137 . exon 137128 137419 . + . ID=Physo158752.19;Parent=Physo158752;constitutive=1;ensembl_phase=2;rank=19 scaffold_137 . exon 137500 137709 . + . ID=Physo158752.20;Parent=Physo158752;constitutive=1;rank=20 scaffold_137 . exon 137764 137916 . + . ID=Physo158752.21;Parent=Physo158752;constitutive=1;rank=21 scaffold_137 . exon 137984 138275 . + . ID=Physo158752.22;Parent=Physo158752;constitutive=1;ensembl_end_phase=1;rank=22 scaffold_137 . exon 138459 138590 . + . ID=Physo158752.23;Parent=Physo158752;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=23 scaffold_137 . exon 138648 140959 . + . ID=Physo158752.24;Parent=Physo158752;constitutive=1;ensembl_phase=1;rank=24 scaffold_137 ensembl protein_coding_gene 141072 142913 . + . ID=Physo158753;biotype=protein_coding;external_name=C_scaffold_137000007;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 141072 142913 . + . ID=Physo158753;Parent=Physo158753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 141072 141131 . + 0 ID=Physo158753;Parent=Physo158753;rank=1 scaffold_137 . exon 141072 141131 . + . ID=Physo158753.1;Parent=Physo158753;constitutive=1;rank=1 scaffold_137 . CDS 141264 141502 . + 0 ID=Physo158753;Parent=Physo158753;rank=2 scaffold_137 . exon 141264 141502 . + . ID=Physo158753.2;Parent=Physo158753;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_137 . CDS 141596 142049 . + 0 ID=Physo158753;Parent=Physo158753;rank=3 scaffold_137 . exon 141596 142049 . + . ID=Physo158753.3;Parent=Physo158753;constitutive=1;ensembl_phase=2;rank=3 scaffold_137 . CDS 142122 142222 . + 0 ID=Physo158753;Parent=Physo158753;rank=4 scaffold_137 . CDS 142250 142296 . + 0 ID=Physo158753;Parent=Physo158753;rank=5 scaffold_137 . CDS 142371 142573 . + 0 ID=Physo158753;Parent=Physo158753;rank=6 scaffold_137 . CDS 142656 142913 . + 0 ID=Physo158753;Parent=Physo158753;rank=7 scaffold_137 . repeat_region 149020 149052 . ? . description=dust scaffold_137 . biological_region 149958 149958 0.999 + . logic_name=eponine scaffold_137 ensembl protein_coding_gene 149070 150026 . + . ID=Physo143388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370037;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 149070 150026 . + . ID=Physo143388;Parent=Physo143388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 149070 150026 . + 0 ID=Physo143388;Parent=Physo143388;rank=1 scaffold_137 . exon 149070 150026 . + . ID=Physo143388.1;Parent=Physo143388;constitutive=1;rank=1 scaffold_137 ensembl protein_coding_gene 150282 151070 . + . ID=Physo143389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1370038;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 150282 151070 . + . ID=Physo143389;Parent=Physo143389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 150282 151070 . + 0 ID=Physo143389;Parent=Physo143389;rank=1 scaffold_137 . exon 150282 151070 . + . ID=Physo143389.1;Parent=Physo143389;constitutive=1;rank=1 scaffold_137 . exon 142122 142222 . + . ID=Physo158753.4;Parent=Physo158753;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_137 . exon 142250 142296 . + . ID=Physo158753.5;Parent=Physo158753;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_137 . exon 142371 142573 . + . ID=Physo158753.6;Parent=Physo158753;constitutive=1;ensembl_phase=1;rank=6 scaffold_137 . exon 142656 142913 . + . ID=Physo158753.7;Parent=Physo158753;constitutive=1;rank=7 scaffold_137 ensembl protein_coding_gene 145859 148717 . + . ID=Physo158754;biotype=protein_coding;external_name=C_scaffold_137000008;logic_name=jgi_physo1_1 scaffold_137 ensembl transcript 145859 148717 . + . ID=Physo158754;Parent=Physo158754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_137 . CDS 145859 146476 . + 0 ID=Physo158754;Parent=Physo158754;rank=1 scaffold_137 . exon 145859 146476 . + . ID=Physo158754.1;Parent=Physo158754;constitutive=1;rank=1 scaffold_137 . CDS 146501 146835 . + 0 ID=Physo158754;Parent=Physo158754;rank=2 scaffold_137 . exon 146501 146835 . + . ID=Physo158754.2;Parent=Physo158754;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_137 . CDS 146869 147132 . + 0 ID=Physo158754;Parent=Physo158754;rank=3 scaffold_137 . exon 146869 147132 . + . ID=Physo158754.3;Parent=Physo158754;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_137 . CDS 147742 148717 . + 0 ID=Physo158754;Parent=Physo158754;rank=4 scaffold_137 . exon 147742 148717 . + . ID=Physo158754.4;Parent=Physo158754;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_135 1 154516 scaffold_135 . repeat_region 911 1021 . ? . description=trf scaffold_135 . biological_region 1040 1043 0.999 - . logic_name=eponine scaffold_135 . biological_region 1079 1082 0.999 - . logic_name=eponine scaffold_135 . biological_region 3947 3949 0.999 - . logic_name=eponine scaffold_135 . biological_region 4037 4039 0.999 - . logic_name=eponine scaffold_135 . repeat_region 4913 5079 . ? . description=trf scaffold_135 . repeat_region 9489 9511 . ? . description=trf scaffold_135 . biological_region 9591 9592 0.999 - . logic_name=eponine scaffold_135 ensembl protein_coding_gene 2970 3473 . + . ID=Physo143307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350001;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 2970 3473 . + . ID=Physo143307;Parent=Physo143307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 2970 3473 . + 0 ID=Physo143307;Parent=Physo143307;rank=1 scaffold_135 . exon 2970 3473 . + . ID=Physo143307.1;Parent=Physo143307;constitutive=1;rank=1 scaffold_135 ensembl protein_coding_gene 6605 11878 . - . ID=Physo143308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350002;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 6605 11878 . - . ID=Physo143308;Parent=Physo143308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 6605 6622 . - 0 ID=Physo143308;Parent=Physo143308;rank=10 scaffold_135 . exon 6605 6622 . - . ID=Physo143308.10;Parent=Physo143308;constitutive=1;rank=10 scaffold_135 . CDS 6708 8648 . - 0 ID=Physo143308;Parent=Physo143308;rank=9 scaffold_135 . exon 6708 8648 . - . ID=Physo143308.9;Parent=Physo143308;constitutive=1;rank=9 scaffold_135 . CDS 8682 9143 . - 0 ID=Physo143308;Parent=Physo143308;rank=8 scaffold_135 . exon 8682 9143 . - . ID=Physo143308.8;Parent=Physo143308;constitutive=1;rank=8 scaffold_135 . CDS 9489 9511 . - 0 ID=Physo143308;Parent=Physo143308;rank=7 scaffold_135 . exon 9489 9511 . - . ID=Physo143308.7;Parent=Physo143308;constitutive=1;ensembl_phase=1;rank=7 scaffold_135 . CDS 9628 9855 . - 0 ID=Physo143308;Parent=Physo143308;rank=6 scaffold_135 . exon 9628 9855 . - . ID=Physo143308.6;Parent=Physo143308;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_135 . CDS 10030 10384 . - 0 ID=Physo143308;Parent=Physo143308;rank=5 scaffold_135 . CDS 10484 10568 . - 0 ID=Physo143308;Parent=Physo143308;rank=4 scaffold_135 . CDS 10681 10849 . - 0 ID=Physo143308;Parent=Physo143308;rank=3 scaffold_135 . CDS 10957 11292 . - 0 ID=Physo143308;Parent=Physo143308;rank=2 scaffold_135 . CDS 11335 11878 . - 0 ID=Physo143308;Parent=Physo143308;rank=1 scaffold_135 . exon 10030 10384 . - . ID=Physo143308.5;Parent=Physo143308;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_135 . exon 10484 10568 . - . ID=Physo143308.4;Parent=Physo143308;constitutive=1;ensembl_phase=2;rank=4 scaffold_135 . exon 10681 10849 . - . ID=Physo143308.3;Parent=Physo143308;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_135 . exon 10957 11292 . - . ID=Physo143308.2;Parent=Physo143308;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_135 . exon 11335 11878 . - . ID=Physo143308.1;Parent=Physo143308;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 ensembl protein_coding_gene 13370 15756 . - . ID=Physo143309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350003;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 13370 15756 . - . ID=Physo143309;Parent=Physo143309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 13370 14504 . - 0 ID=Physo143309;Parent=Physo143309;rank=3 scaffold_135 . exon 13370 14504 . - . ID=Physo143309.3;Parent=Physo143309;constitutive=1;ensembl_phase=2;rank=3 scaffold_135 . CDS 14699 15034 . - 0 ID=Physo143309;Parent=Physo143309;rank=2 scaffold_135 . exon 14699 15034 . - . ID=Physo143309.2;Parent=Physo143309;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_135 . CDS 15242 15756 . - 0 ID=Physo143309;Parent=Physo143309;rank=1 scaffold_135 . exon 15242 15756 . - . ID=Physo143309.1;Parent=Physo143309;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_135 ensembl protein_coding_gene 16951 18425 . - . ID=Physo143310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350004;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 16951 18425 . - . ID=Physo143310;Parent=Physo143310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 16951 17253 . - 0 ID=Physo143310;Parent=Physo143310;rank=3 scaffold_135 . exon 16951 17253 . - . ID=Physo143310.3;Parent=Physo143310;constitutive=1;rank=3 scaffold_135 . CDS 17373 17732 . - 0 ID=Physo143310;Parent=Physo143310;rank=2 scaffold_135 . exon 17373 17732 . - . ID=Physo143310.2;Parent=Physo143310;constitutive=1;rank=2 scaffold_135 . CDS 17811 18425 . - 0 ID=Physo143310;Parent=Physo143310;rank=1 scaffold_135 . exon 17811 18425 . - . ID=Physo143310.1;Parent=Physo143310;constitutive=1;rank=1 scaffold_135 . repeat_region 25245 25290 . ? . description=trf scaffold_135 . repeat_region 28366 28522 . ? . description=trf scaffold_135 . repeat_region 28376 28522 . ? . description=trf scaffold_135 . biological_region 28889 28893 0.999 - . logic_name=eponine scaffold_135 ensembl protein_coding_gene 23275 23724 . - . ID=Physo143311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350005;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 23275 23724 . - . ID=Physo143311;Parent=Physo143311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 23275 23724 . - 0 ID=Physo143311;Parent=Physo143311;rank=1 scaffold_135 . exon 23275 23724 . - . ID=Physo143311.1;Parent=Physo143311;constitutive=1;rank=1 scaffold_135 . repeat_region 31125 31133 . ? . description=dust scaffold_135 . repeat_region 33154 33162 . ? . description=dust scaffold_135 ensembl protein_coding_gene 31926 32444 . + . ID=Physo143312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350006;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 31926 32444 . + . ID=Physo143312;Parent=Physo143312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 31926 32021 . + 0 ID=Physo143312;Parent=Physo143312;rank=1 scaffold_135 . exon 31926 32021 . + . ID=Physo143312.1;Parent=Physo143312;constitutive=1;rank=1 scaffold_135 . CDS 32115 32444 . + 0 ID=Physo143312;Parent=Physo143312;rank=2 scaffold_135 . exon 32115 32444 . + . ID=Physo143312.2;Parent=Physo143312;constitutive=1;rank=2 scaffold_135 . repeat_region 40822 40864 . ? . description=trf scaffold_135 . repeat_region 41662 41723 . ? . description=trf scaffold_135 . repeat_region 46165 46194 . ? . description=trf scaffold_135 . biological_region 46703 46707 0.999 + . logic_name=eponine scaffold_135 . biological_region 47013 47020 0.999 + . logic_name=eponine scaffold_135 ensembl protein_coding_gene 46195 48500 . + . ID=Physo143313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350007;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 46195 48500 . + . ID=Physo143313;Parent=Physo143313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 46195 46304 . + 0 ID=Physo143313;Parent=Physo143313;rank=1 scaffold_135 . exon 46195 46304 . + . ID=Physo143313.1;Parent=Physo143313;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_135 . CDS 46420 47038 . + 0 ID=Physo143313;Parent=Physo143313;rank=2 scaffold_135 . exon 46420 47038 . + . ID=Physo143313.2;Parent=Physo143313;constitutive=1;ensembl_phase=2;rank=2 scaffold_135 . CDS 47572 47645 . + 0 ID=Physo143313;Parent=Physo143313;rank=3 scaffold_135 . exon 47572 47645 . + . ID=Physo143313.3;Parent=Physo143313;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_135 . CDS 47674 48398 . + 0 ID=Physo143313;Parent=Physo143313;rank=4 scaffold_135 . exon 47674 48398 . + . ID=Physo143313.4;Parent=Physo143313;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_135 . CDS 48484 48500 . + 0 ID=Physo143313;Parent=Physo143313;rank=5 scaffold_135 . repeat_region 51123 51131 . ? . description=dust scaffold_135 . repeat_region 53755 53770 . ? . description=dust scaffold_135 ensembl protein_coding_gene 50159 50506 . + . ID=Physo123670;biotype=protein_coding;external_name=estExt_Genewise1.C_1350002;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 50159 50506 . + . ID=Physo123670;Parent=Physo123670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . exon 50159 50506 . + . ID=Physo123670.1;Parent=Physo123670;constitutive=1;ensembl_phase=-1;rank=1 scaffold_135 . CDS 50201 50506 . + 0 ID=Physo123670;Parent=Physo123670;rank=1 scaffold_135 . exon 48484 48500 . + . ID=Physo143313.5;Parent=Physo143313;constitutive=1;ensembl_phase=1;rank=5 scaffold_135 ensembl protein_coding_gene 53200 54181 . - . ID=Physo143315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350009;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 53200 54181 . - . ID=Physo143315;Parent=Physo143315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 53200 53213 . - 0 ID=Physo143315;Parent=Physo143315;rank=4 scaffold_135 . exon 53200 53213 . - . ID=Physo143315.4;Parent=Physo143315;constitutive=1;ensembl_phase=1;rank=4 scaffold_135 . CDS 53236 53421 . - 0 ID=Physo143315;Parent=Physo143315;rank=3 scaffold_135 . exon 53236 53421 . - . ID=Physo143315.3;Parent=Physo143315;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_135 . CDS 53458 53734 . - 0 ID=Physo143315;Parent=Physo143315;rank=2 scaffold_135 . exon 53458 53734 . - . ID=Physo143315.2;Parent=Physo143315;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_135 . CDS 53840 54181 . - 0 ID=Physo143315;Parent=Physo143315;rank=1 scaffold_135 . exon 53840 54181 . - . ID=Physo143315.1;Parent=Physo143315;constitutive=1;rank=1 scaffold_135 . repeat_region 59761 59890 . ? . description=trf scaffold_135 . repeat_region 64615 64775 . ? . description=trf scaffold_135 ensembl protein_coding_gene 59792 60436 . + . ID=Physo143316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350010;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 59792 60436 . + . ID=Physo143316;Parent=Physo143316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 59792 59804 . + 0 ID=Physo143316;Parent=Physo143316;rank=1 scaffold_135 . exon 59792 59804 . + . ID=Physo143316.1;Parent=Physo143316;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 . CDS 59934 60144 . + 0 ID=Physo143316;Parent=Physo143316;rank=2 scaffold_135 . exon 59934 60144 . + . ID=Physo143316.2;Parent=Physo143316;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_135 . CDS 60199 60436 . + 0 ID=Physo143316;Parent=Physo143316;rank=3 scaffold_135 . exon 60199 60436 . + . ID=Physo143316.3;Parent=Physo143316;constitutive=1;ensembl_phase=2;rank=3 scaffold_135 . repeat_region 67797 67804 . ? . description=dust scaffold_135 . repeat_region 69119 69128 . ? . description=dust scaffold_135 . repeat_region 69860 69867 . ? . description=dust scaffold_135 . repeat_region 69919 69926 . ? . description=dust scaffold_135 . repeat_region 70774 70782 . ? . description=dust scaffold_135 . repeat_region 72170 72184 . ? . description=dust scaffold_135 . repeat_region 73921 73964 . ? . description=dust scaffold_135 . biological_region 75937 75945 0.999 + . logic_name=eponine scaffold_135 . biological_region 75960 75964 0.999 + . logic_name=eponine scaffold_135 . biological_region 76036 76040 0.999 - . logic_name=eponine scaffold_135 . repeat_region 76567 76847 . - . description=GypsyPi-1c_I-int scaffold_135 ensembl protein_coding_gene 76805 85436 . - . ID=Physo143317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350011;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 76805 85436 . - . ID=Physo143317;Parent=Physo143317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 76805 76811 . - 0 ID=Physo143317;Parent=Physo143317;rank=15 scaffold_135 . exon 76805 76811 . - . ID=Physo143317.15;Parent=Physo143317;constitutive=1;ensembl_phase=2;rank=15 scaffold_135 . CDS 76852 77564 . - 0 ID=Physo143317;Parent=Physo143317;rank=14 scaffold_135 . exon 76852 77564 . - . ID=Physo143317.14;Parent=Physo143317;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_135 . CDS 77762 78067 . - 0 ID=Physo143317;Parent=Physo143317;rank=13 scaffold_135 . CDS 78097 79067 . - 0 ID=Physo143317;Parent=Physo143317;rank=12 scaffold_135 . CDS 79198 79567 . - 0 ID=Physo143317;Parent=Physo143317;rank=11 scaffold_135 . CDS 79631 80139 . - 0 ID=Physo143317;Parent=Physo143317;rank=10 scaffold_135 . CDS 80350 80883 . - 0 ID=Physo143317;Parent=Physo143317;rank=9 scaffold_135 . CDS 81462 82044 . - 0 ID=Physo143317;Parent=Physo143317;rank=8 scaffold_135 . CDS 82703 83032 . - 0 ID=Physo143317;Parent=Physo143317;rank=7 scaffold_135 . CDS 83058 83441 . - 0 ID=Physo143317;Parent=Physo143317;rank=6 scaffold_135 . CDS 83487 83637 . - 0 ID=Physo143317;Parent=Physo143317;rank=5 scaffold_135 . CDS 84276 84484 . - 0 ID=Physo143317;Parent=Physo143317;rank=4 scaffold_135 . CDS 84686 85009 . - 0 ID=Physo143317;Parent=Physo143317;rank=3 scaffold_135 . CDS 85086 85257 . - 0 ID=Physo143317;Parent=Physo143317;rank=2 scaffold_135 . CDS 85312 85436 . - 0 ID=Physo143317;Parent=Physo143317;rank=1 scaffold_135 . repeat_region 85904 85943 . ? . description=trf scaffold_135 . exon 77762 78067 . - . ID=Physo143317.13;Parent=Physo143317;constitutive=1;rank=13 scaffold_135 . exon 78097 79067 . - . ID=Physo143317.12;Parent=Physo143317;constitutive=1;ensembl_phase=1;rank=12 scaffold_135 . exon 79198 79567 . - . ID=Physo143317.11;Parent=Physo143317;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_135 . exon 79631 80139 . - . ID=Physo143317.10;Parent=Physo143317;constitutive=1;ensembl_phase=1;rank=10 scaffold_135 . exon 80350 80883 . - . ID=Physo143317.9;Parent=Physo143317;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_135 . exon 81462 82044 . - . ID=Physo143317.8;Parent=Physo143317;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_135 . exon 82703 83032 . - . ID=Physo143317.7;Parent=Physo143317;constitutive=1;rank=7 scaffold_135 . exon 83058 83441 . - . ID=Physo143317.6;Parent=Physo143317;constitutive=1;rank=6 scaffold_135 . exon 83487 83637 . - . ID=Physo143317.5;Parent=Physo143317;constitutive=1;ensembl_phase=2;rank=5 scaffold_135 . exon 84276 84484 . - . ID=Physo143317.4;Parent=Physo143317;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_135 . exon 84686 85009 . - . ID=Physo143317.3;Parent=Physo143317;constitutive=1;rank=3 scaffold_135 . exon 85086 85257 . - . ID=Physo143317.2;Parent=Physo143317;constitutive=1;ensembl_phase=2;rank=2 scaffold_135 . exon 85312 85436 . - . ID=Physo143317.1;Parent=Physo143317;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_135 ensembl protein_coding_gene 86618 88053 . - . ID=Physo143318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350012;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 86618 88053 . - . ID=Physo143318;Parent=Physo143318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . exon 86618 87852 . - . ID=Physo143318.2;Parent=Physo143318;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_135 . CDS 86738 87852 . - 0 ID=Physo143318;Parent=Physo143318;rank=2 scaffold_135 . CDS 87957 88053 . - 0 ID=Physo143318;Parent=Physo143318;rank=1 scaffold_135 . biological_region 87158 87162 0.999 - . logic_name=eponine scaffold_135 . biological_region 87500 87507 0.999 - . logic_name=eponine scaffold_135 . biological_region 87532 87533 0.999 + . logic_name=eponine scaffold_135 . biological_region 87553 87561 0.999 + . logic_name=eponine scaffold_135 . biological_region 89398 89401 0.999 - . logic_name=eponine scaffold_135 . biological_region 90420 90424 0.999 - . logic_name=eponine scaffold_135 . biological_region 91191 91194 0.999 + . logic_name=eponine scaffold_135 . repeat_region 93172 93216 . ? . description=dust scaffold_135 . biological_region 94100 94100 0.999 + . logic_name=eponine scaffold_135 . biological_region 94219 94221 0.999 + . logic_name=eponine scaffold_135 . biological_region 94223 94230 0.999 - . logic_name=eponine scaffold_135 . biological_region 94972 94977 0.999 + . logic_name=eponine scaffold_135 . biological_region 95011 95017 0.999 - . logic_name=eponine scaffold_135 . biological_region 95030 95033 0.999 - . logic_name=eponine scaffold_135 . repeat_region 95833 95865 . ? . description=dust scaffold_135 . biological_region 96052 96052 0.999 + . logic_name=eponine scaffold_135 . biological_region 96571 96572 0.999 - . logic_name=eponine scaffold_135 ensembl protein_coding_gene 88467 91792 . - . ID=Physo109551;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1350001;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 88467 91792 . - . ID=Physo109551;Parent=Physo109551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . exon 88467 89207 . - . ID=Physo109551.4;Parent=Physo109551;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_135 . CDS 88481 89207 . - 0 ID=Physo109551;Parent=Physo109551;rank=4 scaffold_135 . CDS 89259 90388 . - 0 ID=Physo109551;Parent=Physo109551;rank=3 scaffold_135 . exon 89259 90388 . - . ID=Physo109551.3;Parent=Physo109551;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_135 . CDS 90427 90449 . - 0 ID=Physo109551;Parent=Physo109551;rank=2 scaffold_135 . exon 90427 90449 . - . ID=Physo109551.2;Parent=Physo109551;constitutive=1;ensembl_phase=1;rank=2 scaffold_135 . CDS 90499 91792 . - 0 ID=Physo109551;Parent=Physo109551;rank=1 scaffold_135 . exon 90499 91792 . - . ID=Physo109551.1;Parent=Physo109551;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 . exon 87957 88053 . - . ID=Physo143318.1;Parent=Physo143318;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 ensembl protein_coding_gene 93216 95642 . + . ID=Physo143320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350014;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 93216 95642 . + . ID=Physo143320;Parent=Physo143320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 93216 95642 . + 0 ID=Physo143320;Parent=Physo143320;rank=1 scaffold_135 . exon 93216 95642 . + . ID=Physo143320.1;Parent=Physo143320;constitutive=1;rank=1 scaffold_135 ensembl protein_coding_gene 96239 97720 . + . ID=Physo143321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350015;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 96239 97720 . + . ID=Physo143321;Parent=Physo143321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 96239 96505 . + 0 ID=Physo143321;Parent=Physo143321;rank=1 scaffold_135 . exon 96239 96505 . + . ID=Physo143321.1;Parent=Physo143321;constitutive=1;rank=1 scaffold_135 . CDS 96707 97720 . + 0 ID=Physo143321;Parent=Physo143321;rank=2 scaffold_135 . exon 96707 97720 . + . ID=Physo143321.2;Parent=Physo143321;constitutive=1;rank=2 scaffold_135 . repeat_region 103013 110601 . ? . description=dust scaffold_135 . repeat_region 111117 111166 . ? . description=dust scaffold_135 . repeat_region 112903 112952 . ? . description=dust scaffold_135 ensembl protein_coding_gene 113858 116394 . - . ID=Physo143322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350016;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 113858 116394 . - . ID=Physo143322;Parent=Physo143322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 113858 114919 . - 0 ID=Physo143322;Parent=Physo143322;rank=3 scaffold_135 . exon 113858 114919 . - . ID=Physo143322.3;Parent=Physo143322;constitutive=1;rank=3 scaffold_135 . CDS 114940 115926 . - 0 ID=Physo143322;Parent=Physo143322;rank=2 scaffold_135 . exon 114940 115926 . - . ID=Physo143322.2;Parent=Physo143322;constitutive=1;rank=2 scaffold_135 . CDS 116128 116394 . - 0 ID=Physo143322;Parent=Physo143322;rank=1 scaffold_135 . biological_region 116062 116063 0.999 + . logic_name=eponine scaffold_135 . biological_region 118545 118551 0.999 + . logic_name=eponine scaffold_135 . biological_region 118574 118580 0.999 + . logic_name=eponine scaffold_135 . biological_region 118596 118599 0.999 - . logic_name=eponine scaffold_135 . biological_region 118614 118619 0.999 - . logic_name=eponine scaffold_135 . biological_region 119361 119368 0.999 + . logic_name=eponine scaffold_135 . biological_region 119370 119372 0.999 - . logic_name=eponine scaffold_135 . biological_region 119490 119490 0.999 - . logic_name=eponine scaffold_135 . repeat_region 119862 119898 . ? . description=trf scaffold_135 . biological_region 119896 119901 0.999 + . logic_name=eponine scaffold_135 . biological_region 119932 119937 0.999 + . logic_name=eponine scaffold_135 . biological_region 119955 119955 0.999 - . logic_name=eponine scaffold_135 . biological_region 119971 119976 0.999 - . logic_name=eponine scaffold_135 . biological_region 120718 120725 0.999 + . logic_name=eponine scaffold_135 . biological_region 120727 120729 0.999 - . logic_name=eponine scaffold_135 . biological_region 120848 120848 0.999 - . logic_name=eponine scaffold_135 . repeat_region 121405 121438 . ? . description=trf scaffold_135 . biological_region 124882 124884 0.999 + . logic_name=eponine scaffold_135 . exon 116128 116394 . - . ID=Physo143322.1;Parent=Physo143322;constitutive=1;rank=1 scaffold_135 ensembl protein_coding_gene 117936 121266 . - . ID=Physo143323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350017;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 117936 121266 . - . ID=Physo143323;Parent=Physo143323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 117936 119436 . - 0 ID=Physo143323;Parent=Physo143323;rank=2 scaffold_135 . exon 117936 119436 . - . ID=Physo143323.2;Parent=Physo143323;constitutive=1;ensembl_phase=2;rank=2 scaffold_135 . CDS 119597 121266 . - 0 ID=Physo143323;Parent=Physo143323;rank=1 scaffold_135 . exon 119597 121266 . - . ID=Physo143323.1;Parent=Physo143323;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_135 ensembl protein_coding_gene 123380 124426 . - . ID=Physo143324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350018;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 123380 124426 . - . ID=Physo143324;Parent=Physo143324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 123380 123697 . - 0 ID=Physo143324;Parent=Physo143324;rank=3 scaffold_135 . exon 123380 123697 . - . ID=Physo143324.3;Parent=Physo143324;constitutive=1;rank=3 scaffold_135 . CDS 123851 124080 . - 0 ID=Physo143324;Parent=Physo143324;rank=2 scaffold_135 . exon 123851 124080 . - . ID=Physo143324.2;Parent=Physo143324;constitutive=1;ensembl_phase=1;rank=2 scaffold_135 . CDS 124156 124426 . - 0 ID=Physo143324;Parent=Physo143324;rank=1 scaffold_135 . exon 124156 124426 . - . ID=Physo143324.1;Parent=Physo143324;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 ensembl protein_coding_gene 126567 128240 . - . ID=Physo143325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350019;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 126567 128240 . - . ID=Physo143325;Parent=Physo143325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 126567 126854 . - 0 ID=Physo143325;Parent=Physo143325;rank=6 scaffold_135 . exon 126567 126854 . - . ID=Physo143325.6;Parent=Physo143325;constitutive=1;rank=6 scaffold_135 . CDS 126902 127051 . - 0 ID=Physo143325;Parent=Physo143325;rank=5 scaffold_135 . exon 126902 127051 . - . ID=Physo143325.5;Parent=Physo143325;constitutive=1;rank=5 scaffold_135 . CDS 127114 127392 . - 0 ID=Physo143325;Parent=Physo143325;rank=4 scaffold_135 . exon 127114 127392 . - . ID=Physo143325.4;Parent=Physo143325;constitutive=1;rank=4 scaffold_135 . CDS 127469 127599 . - 0 ID=Physo143325;Parent=Physo143325;rank=3 scaffold_135 . exon 127469 127599 . - . ID=Physo143325.3;Parent=Physo143325;constitutive=1;ensembl_phase=1;rank=3 scaffold_135 . CDS 127675 127761 . - 0 ID=Physo143325;Parent=Physo143325;rank=2 scaffold_135 . exon 127675 127761 . - . ID=Physo143325.2;Parent=Physo143325;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_135 . CDS 127829 128240 . - 0 ID=Physo143325;Parent=Physo143325;rank=1 scaffold_135 . exon 127829 128240 . - . ID=Physo143325.1;Parent=Physo143325;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 . biological_region 141094 141098 0.999 + . logic_name=eponine scaffold_135 . biological_region 143318 143325 0.999 + . logic_name=eponine scaffold_135 . biological_region 143360 143361 0.999 - . logic_name=eponine scaffold_135 . biological_region 144120 144122 0.999 - . logic_name=eponine scaffold_135 . biological_region 144133 144136 0.999 + . logic_name=eponine scaffold_135 . biological_region 144158 144161 0.999 - . logic_name=eponine scaffold_135 . biological_region 144216 144218 0.999 + . logic_name=eponine scaffold_135 . biological_region 144239 144242 0.999 + . logic_name=eponine scaffold_135 . biological_region 144264 144267 0.999 - . logic_name=eponine scaffold_135 . biological_region 144471 144476 0.999 - . logic_name=eponine scaffold_135 . repeat_region 144742 144797 . ? . description=dust scaffold_135 ensembl protein_coding_gene 141443 142188 . + . ID=Physo123676;biotype=protein_coding;external_name=estExt_Genewise1.C_1350008;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 141443 142188 . + . ID=Physo123676;Parent=Physo123676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . exon 141443 141469 . + . ID=Physo123676.1;Parent=Physo123676;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_135 . CDS 141465 141469 . + 0 ID=Physo123676;Parent=Physo123676;rank=1 scaffold_135 . CDS 141554 141809 . + 0 ID=Physo123676;Parent=Physo123676;rank=2 scaffold_135 . exon 141554 142188 . + . ID=Physo123676.2;Parent=Physo123676;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_135 ensembl protein_coding_gene 140048 141173 . - . ID=Physo143326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350020;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 140048 141173 . - . ID=Physo143326;Parent=Physo143326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 140048 140382 . - 0 ID=Physo143326;Parent=Physo143326;rank=5 scaffold_135 . exon 140048 140382 . - . ID=Physo143326.5;Parent=Physo143326;constitutive=1;ensembl_phase=1;rank=5 scaffold_135 . CDS 140461 140580 . - 0 ID=Physo143326;Parent=Physo143326;rank=4 scaffold_135 . exon 140461 140580 . - . ID=Physo143326.4;Parent=Physo143326;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_135 . CDS 140671 140734 . - 0 ID=Physo143326;Parent=Physo143326;rank=3 scaffold_135 . exon 140671 140734 . - . ID=Physo143326.3;Parent=Physo143326;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_135 . CDS 140799 140888 . - 0 ID=Physo143326;Parent=Physo143326;rank=2 scaffold_135 . exon 140799 140888 . - . ID=Physo143326.2;Parent=Physo143326;constitutive=1;rank=2 scaffold_135 . CDS 140982 141173 . - 0 ID=Physo143326;Parent=Physo143326;rank=1 scaffold_135 . exon 140982 141173 . - . ID=Physo143326.1;Parent=Physo143326;constitutive=1;rank=1 scaffold_135 ensembl protein_coding_gene 142477 144640 . + . ID=Physo143327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1350021;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 142477 144640 . + . ID=Physo143327;Parent=Physo143327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 142477 143928 . + 0 ID=Physo143327;Parent=Physo143327;rank=1 scaffold_135 . exon 142477 143928 . + . ID=Physo143327.1;Parent=Physo143327;constitutive=1;rank=1 scaffold_135 . CDS 144008 144640 . + 0 ID=Physo143327;Parent=Physo143327;rank=2 scaffold_135 . exon 144008 144640 . + . ID=Physo143327.2;Parent=Physo143327;constitutive=1;rank=2 scaffold_135 ensembl protein_coding_gene 144849 146777 . - . ID=Physo158746;biotype=protein_coding;external_name=C_scaffold_135000002;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 144849 146777 . - . ID=Physo158746;Parent=Physo158746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 144849 145551 . - 0 ID=Physo158746;Parent=Physo158746;rank=2 scaffold_135 . exon 144849 145551 . - . ID=Physo158746.2;Parent=Physo158746;constitutive=1;ensembl_phase=2;rank=2 scaffold_135 . CDS 145585 146777 . - 0 ID=Physo158746;Parent=Physo158746;rank=1 scaffold_135 . repeat_region 154174 154210 . ? . description=trf scaffold_135 ensembl tRNA_gene 154051 154123 . - . ID=EPrPSOG00000000016;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_135 ensembl transcript 154051 154123 . - . ID=EPrPSOT00000000016;Parent=EPrPSOG00000000016;biotype=tRNA;logic_name=ncrna_eg scaffold_135 . exon 154051 154123 . - . ID=EPrPSOE00000000016;Parent=EPrPSOT00000000016;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_135 ensembl protein_coding_gene 149147 149464 . - . ID=Physo123681;biotype=protein_coding;external_name=estExt_Genewise1.C_1350013;logic_name=jgi_physo1_1 scaffold_135 ensembl transcript 149147 149464 . - . ID=Physo123681;Parent=Physo123681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_135 . CDS 149147 149458 . - 0 ID=Physo123681;Parent=Physo123681;rank=1 scaffold_135 . exon 149147 149464 . - . ID=Physo123681.1;Parent=Physo123681;constitutive=1;ensembl_phase=-1;rank=1 scaffold_135 . exon 145585 146777 . - . ID=Physo158746.1;Parent=Physo158746;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_125 1 156242 scaffold_125 . repeat_region 1408 1427 . ? . description=trf scaffold_125 . repeat_region 1796 13236 . ? . description=dust scaffold_125 . biological_region 19330 19337 0.999 - . logic_name=eponine scaffold_125 ensembl protein_coding_gene 14431 15961 . + . ID=Physo142925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250001;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 14431 15961 . + . ID=Physo142925;Parent=Physo142925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 14431 14551 . + 0 ID=Physo142925;Parent=Physo142925;rank=1 scaffold_125 . exon 14431 14551 . + . ID=Physo142925.1;Parent=Physo142925;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 . CDS 14688 14804 . + 0 ID=Physo142925;Parent=Physo142925;rank=2 scaffold_125 . exon 14688 14804 . + . ID=Physo142925.2;Parent=Physo142925;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 14964 15961 . + 0 ID=Physo142925;Parent=Physo142925;rank=3 scaffold_125 . exon 14964 15961 . + . ID=Physo142925.3;Parent=Physo142925;constitutive=1;ensembl_phase=1;rank=3 scaffold_125 ensembl protein_coding_gene 16678 18531 . - . ID=Physo142926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250002;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 16678 18531 . - . ID=Physo142926;Parent=Physo142926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 16678 17157 . - 0 ID=Physo142926;Parent=Physo142926;rank=2 scaffold_125 . exon 16678 17157 . - . ID=Physo142926.2;Parent=Physo142926;constitutive=1;rank=2 scaffold_125 . CDS 17425 18531 . - 0 ID=Physo142926;Parent=Physo142926;rank=1 scaffold_125 . exon 17425 18531 . - . ID=Physo142926.1;Parent=Physo142926;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 19044 19346 . - . ID=Physo142927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250003;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 19044 19346 . - . ID=Physo142927;Parent=Physo142927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 19044 19346 . - 0 ID=Physo142927;Parent=Physo142927;rank=1 scaffold_125 . exon 19044 19346 . - . ID=Physo142927.1;Parent=Physo142927;constitutive=1;rank=1 scaffold_125 . repeat_region 19791 19810 . ? . description=dust scaffold_125 . repeat_region 19791 19810 . ? . description=trf scaffold_125 . repeat_region 22154 22161 . ? . description=dust scaffold_125 . repeat_region 25045 25092 . ? . description=trf scaffold_125 . repeat_region 25114 25131 . ? . description=dust scaffold_125 . repeat_region 25319 25326 . ? . description=dust scaffold_125 . repeat_region 26366 26374 . ? . description=dust scaffold_125 . repeat_region 27158 27179 . ? . description=dust scaffold_125 . repeat_region 27158 27179 . ? . description=trf scaffold_125 . repeat_region 28845 28854 . ? . description=dust scaffold_125 ensembl protein_coding_gene 24155 24666 . + . ID=Physo142928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250004;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 24155 24666 . + . ID=Physo142928;Parent=Physo142928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 24155 24303 . + 0 ID=Physo142928;Parent=Physo142928;rank=1 scaffold_125 . exon 24155 24303 . + . ID=Physo142928.1;Parent=Physo142928;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 . CDS 24377 24596 . + 0 ID=Physo142928;Parent=Physo142928;rank=2 scaffold_125 . exon 24377 24596 . + . ID=Physo142928.2;Parent=Physo142928;constitutive=1;ensembl_phase=2;rank=2 scaffold_125 . CDS 24661 24666 . + 0 ID=Physo142928;Parent=Physo142928;rank=3 scaffold_125 . exon 24661 24666 . + . ID=Physo142928.3;Parent=Physo142928;constitutive=1;rank=3 scaffold_125 . biological_region 31220 31222 0.999 - . logic_name=eponine scaffold_125 . biological_region 31313 31316 0.999 - . logic_name=eponine scaffold_125 . biological_region 34116 34119 0.999 + . logic_name=eponine scaffold_125 . biological_region 34181 34184 0.999 - . logic_name=eponine scaffold_125 . biological_region 36509 36513 0.999 + . logic_name=eponine scaffold_125 ensembl tRNA_gene 30929 30998 . - . ID=EPrPSOG00000000206;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_125 ensembl transcript 30929 30998 . - . ID=EPrPSOT00000000206;Parent=EPrPSOG00000000206;biotype=tRNA;logic_name=ncrna_eg scaffold_125 . exon 30929 30998 . - . ID=EPrPSOE00000000206;Parent=EPrPSOT00000000206;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 . repeat_region 39174 39236 . ? . description=trf scaffold_125 . repeat_region 39476 39504 . ? . description=dust scaffold_125 . repeat_region 40261 40277 . ? . description=dust scaffold_125 . repeat_region 45655 46431 . - . description=Polinton-1_PI scaffold_125 . repeat_region 47114 47153 . ? . description=trf scaffold_125 . repeat_region 47207 47476 . - . description=Polinton-1_PI scaffold_125 . repeat_region 47526 47596 . + . description=Polinton-1_PI scaffold_125 . repeat_region 47612 47796 . + . description=Polinton-1_PI scaffold_125 ensembl protein_coding_gene 46952 48180 . - . ID=Physo142929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250005;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 46952 48180 . - . ID=Physo142929;Parent=Physo142929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 46952 47355 . - 0 ID=Physo142929;Parent=Physo142929;rank=2 scaffold_125 . exon 46952 47355 . - . ID=Physo142929.2;Parent=Physo142929;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 47793 48180 . - 0 ID=Physo142929;Parent=Physo142929;rank=1 scaffold_125 . exon 47793 48180 . - . ID=Physo142929.1;Parent=Physo142929;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 ensembl protein_coding_gene 48458 49202 . + . ID=Physo142930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250006;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 48458 49202 . + . ID=Physo142930;Parent=Physo142930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 48458 48688 . + 0 ID=Physo142930;Parent=Physo142930;rank=1 scaffold_125 . exon 48458 48688 . + . ID=Physo142930.1;Parent=Physo142930;constitutive=1;rank=1 scaffold_125 . CDS 48712 49020 . + 0 ID=Physo142930;Parent=Physo142930;rank=2 scaffold_125 . exon 48712 49202 . + . ID=Physo142930.2;Parent=Physo142930;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_125 . biological_region 49029 49030 0.999 + . logic_name=eponine scaffold_125 . biological_region 52116 52121 0.999 + . logic_name=eponine scaffold_125 . biological_region 52483 52489 0.999 + . logic_name=eponine scaffold_125 . biological_region 53178 53181 0.999 + . logic_name=eponine scaffold_125 . biological_region 54276 54279 0.999 + . logic_name=eponine scaffold_125 . biological_region 55553 55556 0.999 + . logic_name=eponine scaffold_125 . biological_region 55599 55599 0.999 + . logic_name=eponine scaffold_125 ensembl protein_coding_gene 49277 52362 . - . ID=Physo123323;biotype=protein_coding;external_name=estExt_Genewise1.C_1250001;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 49277 52362 . - . ID=Physo123323;Parent=Physo123323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 49277 49550 . - 0 ID=Physo123323;Parent=Physo123323;rank=2 scaffold_125 . exon 49277 49550 . - . ID=Physo123323.2;Parent=Physo123323;constitutive=1;ensembl_phase=2;rank=2 scaffold_125 . CDS 52088 52272 . - 0 ID=Physo123323;Parent=Physo123323;rank=1 scaffold_125 . exon 52088 52362 . - . ID=Physo123323.1;Parent=Physo123323;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_125 ensembl protein_coding_gene 52716 54820 . + . ID=Physo142931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250007;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 52716 54820 . + . ID=Physo142931;Parent=Physo142931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 52716 53278 . + 0 ID=Physo142931;Parent=Physo142931;rank=1 scaffold_125 . exon 52716 53278 . + . ID=Physo142931.1;Parent=Physo142931;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 . CDS 53358 53639 . + 0 ID=Physo142931;Parent=Physo142931;rank=2 scaffold_125 . exon 53358 53639 . + . ID=Physo142931.2;Parent=Physo142931;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_125 . CDS 53767 53780 . + 0 ID=Physo142931;Parent=Physo142931;rank=3 scaffold_125 . exon 53767 53780 . + . ID=Physo142931.3;Parent=Physo142931;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_125 . CDS 53849 54114 . + 0 ID=Physo142931;Parent=Physo142931;rank=4 scaffold_125 . exon 53849 54114 . + . ID=Physo142931.4;Parent=Physo142931;constitutive=1;ensembl_phase=1;rank=4 scaffold_125 . CDS 54167 54820 . + 0 ID=Physo142931;Parent=Physo142931;rank=5 scaffold_125 . exon 54167 54820 . + . ID=Physo142931.5;Parent=Physo142931;constitutive=1;rank=5 scaffold_125 ensembl protein_coding_gene 55948 57037 . + . ID=Physo142932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250008;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 55948 57037 . + . ID=Physo142932;Parent=Physo142932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 55948 56982 . + 0 ID=Physo142932;Parent=Physo142932;rank=1 scaffold_125 . exon 55948 57037 . + . ID=Physo142932.1;Parent=Physo142932;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_125 . repeat_region 60788 60799 . ? . description=dust scaffold_125 ensembl protein_coding_gene 60806 62870 . + . ID=Physo142933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250009;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 60806 62870 . + . ID=Physo142933;Parent=Physo142933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 60806 61269 . + 0 ID=Physo142933;Parent=Physo142933;rank=1 scaffold_125 . exon 60806 61269 . + . ID=Physo142933.1;Parent=Physo142933;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 . CDS 61333 61764 . + 0 ID=Physo142933;Parent=Physo142933;rank=2 scaffold_125 . exon 61333 61764 . + . ID=Physo142933.2;Parent=Physo142933;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_125 . CDS 61809 62354 . + 0 ID=Physo142933;Parent=Physo142933;rank=3 scaffold_125 . exon 61809 62354 . + . ID=Physo142933.3;Parent=Physo142933;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_125 . CDS 62417 62870 . + 0 ID=Physo142933;Parent=Physo142933;rank=4 scaffold_125 . exon 62417 62870 . + . ID=Physo142933.4;Parent=Physo142933;constitutive=1;ensembl_phase=2;rank=4 scaffold_125 . biological_region 69268 69268 0.999 - . logic_name=eponine scaffold_125 . repeat_region 69604 69648 . ? . description=trf scaffold_125 . repeat_region 70790 70878 . - . description=Gypsy-2-I_PI-int scaffold_125 . biological_region 72986 72989 0.999 + . logic_name=eponine scaffold_125 . biological_region 73915 73919 0.999 + . logic_name=eponine scaffold_125 . repeat_region 73923 73991 . ? . description=trf scaffold_125 . repeat_region 73963 74005 . ? . description=trf scaffold_125 . biological_region 74054 74055 0.999 - . logic_name=eponine scaffold_125 . repeat_region 74710 74757 . ? . description=trf scaffold_125 . repeat_region 75657 75682 . ? . description=trf scaffold_125 . biological_region 77043 77046 0.999 - . logic_name=eponine scaffold_125 ensembl protein_coding_gene 78590 80220 . + . ID=Physo142934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250010;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 78590 80220 . + . ID=Physo142934;Parent=Physo142934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . exon 78590 78898 . + . ID=Physo142934.1;Parent=Physo142934;constitutive=1;ensembl_phase=-1;rank=1 scaffold_125 . CDS 78683 78898 . + 0 ID=Physo142934;Parent=Physo142934;rank=1 scaffold_125 . CDS 78975 80003 . + 0 ID=Physo142934;Parent=Physo142934;rank=2 scaffold_125 . exon 78975 80003 . + . ID=Physo142934.2;Parent=Physo142934;constitutive=1;rank=2 scaffold_125 . CDS 80075 80143 . + 0 ID=Physo142934;Parent=Physo142934;rank=3 scaffold_125 . exon 80075 80143 . + . ID=Physo142934.3;Parent=Physo142934;constitutive=1;rank=3 scaffold_125 . CDS 80185 80220 . + 0 ID=Physo142934;Parent=Physo142934;rank=4 scaffold_125 . exon 80185 80220 . + . ID=Physo142934.4;Parent=Physo142934;constitutive=1;rank=4 scaffold_125 ensembl protein_coding_gene 86286 95404 . - . ID=Physo142935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250011;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 86286 95404 . - . ID=Physo142935;Parent=Physo142935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 86286 86294 . - 0 ID=Physo142935;Parent=Physo142935;rank=24 scaffold_125 . exon 86286 86294 . - . ID=Physo142935.24;Parent=Physo142935;constitutive=1;rank=24 scaffold_125 . CDS 86504 87508 . - 0 ID=Physo142935;Parent=Physo142935;rank=23 scaffold_125 . exon 86504 87508 . - . ID=Physo142935.23;Parent=Physo142935;constitutive=1;rank=23 scaffold_125 . CDS 87607 88102 . - 0 ID=Physo142935;Parent=Physo142935;rank=22 scaffold_125 . exon 87607 88102 . - . ID=Physo142935.22;Parent=Physo142935;constitutive=1;ensembl_phase=2;rank=22 scaffold_125 . CDS 88180 88571 . - 0 ID=Physo142935;Parent=Physo142935;rank=21 scaffold_125 . CDS 88762 89229 . - 0 ID=Physo142935;Parent=Physo142935;rank=20 scaffold_125 . CDS 89303 89444 . - 0 ID=Physo142935;Parent=Physo142935;rank=19 scaffold_125 . CDS 89506 89527 . - 0 ID=Physo142935;Parent=Physo142935;rank=18 scaffold_125 . CDS 89696 90340 . - 0 ID=Physo142935;Parent=Physo142935;rank=17 scaffold_125 . CDS 91088 91352 . - 0 ID=Physo142935;Parent=Physo142935;rank=16 scaffold_125 . CDS 91426 91743 . - 0 ID=Physo142935;Parent=Physo142935;rank=15 scaffold_125 . CDS 91812 92499 . - 0 ID=Physo142935;Parent=Physo142935;rank=14 scaffold_125 . CDS 92913 92969 . - 0 ID=Physo142935;Parent=Physo142935;rank=13 scaffold_125 . CDS 93107 93416 . - 0 ID=Physo142935;Parent=Physo142935;rank=12 scaffold_125 . CDS 93486 93549 . - 0 ID=Physo142935;Parent=Physo142935;rank=11 scaffold_125 . CDS 93619 93707 . - 0 ID=Physo142935;Parent=Physo142935;rank=10 scaffold_125 . CDS 93800 93903 . - 0 ID=Physo142935;Parent=Physo142935;rank=9 scaffold_125 . CDS 93984 94057 . - 0 ID=Physo142935;Parent=Physo142935;rank=8 scaffold_125 . CDS 94130 94267 . - 0 ID=Physo142935;Parent=Physo142935;rank=7 scaffold_125 . CDS 94344 94397 . - 0 ID=Physo142935;Parent=Physo142935;rank=6 scaffold_125 . CDS 94464 94537 . - 0 ID=Physo142935;Parent=Physo142935;rank=5 scaffold_125 . CDS 94613 94770 . - 0 ID=Physo142935;Parent=Physo142935;rank=4 scaffold_125 . CDS 94866 94919 . - 0 ID=Physo142935;Parent=Physo142935;rank=3 scaffold_125 . CDS 94995 95112 . - 0 ID=Physo142935;Parent=Physo142935;rank=2 scaffold_125 . CDS 95191 95404 . - 0 ID=Physo142935;Parent=Physo142935;rank=1 scaffold_125 . biological_region 93332 93333 0.999 + . logic_name=eponine scaffold_125 . repeat_region 93780 93787 . ? . description=dust scaffold_125 . exon 88180 88571 . - . ID=Physo142935.21;Parent=Physo142935;constitutive=1;ensembl_end_phase=2;rank=21 scaffold_125 . exon 88762 89229 . - . ID=Physo142935.20;Parent=Physo142935;constitutive=1;rank=20 scaffold_125 . exon 89303 89444 . - . ID=Physo142935.19;Parent=Physo142935;constitutive=1;ensembl_phase=2;rank=19 scaffold_125 . exon 89506 89527 . - . ID=Physo142935.18;Parent=Physo142935;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=18 scaffold_125 . exon 89696 90340 . - . ID=Physo142935.17;Parent=Physo142935;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=17 scaffold_125 . exon 91088 91352 . - . ID=Physo142935.16;Parent=Physo142935;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_125 . exon 91426 91743 . - . ID=Physo142935.15;Parent=Physo142935;constitutive=1;rank=15 scaffold_125 . exon 91812 92499 . - . ID=Physo142935.14;Parent=Physo142935;constitutive=1;ensembl_phase=2;rank=14 scaffold_125 . exon 92913 92969 . - . ID=Physo142935.13;Parent=Physo142935;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_125 . exon 93107 93416 . - . ID=Physo142935.12;Parent=Physo142935;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_125 . exon 93486 93549 . - . ID=Physo142935.11;Parent=Physo142935;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_125 . exon 93619 93707 . - . ID=Physo142935.10;Parent=Physo142935;constitutive=1;ensembl_phase=1;rank=10 scaffold_125 . exon 93800 93903 . - . ID=Physo142935.9;Parent=Physo142935;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_125 . exon 93984 94057 . - . ID=Physo142935.8;Parent=Physo142935;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_125 . exon 94130 94267 . - . ID=Physo142935.7;Parent=Physo142935;constitutive=1;rank=7 scaffold_125 . exon 94344 94397 . - . ID=Physo142935.6;Parent=Physo142935;constitutive=1;rank=6 scaffold_125 . exon 94464 94537 . - . ID=Physo142935.5;Parent=Physo142935;constitutive=1;ensembl_phase=1;rank=5 scaffold_125 . exon 94613 94770 . - . ID=Physo142935.4;Parent=Physo142935;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_125 . exon 94866 94919 . - . ID=Physo142935.3;Parent=Physo142935;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_125 . exon 94995 95112 . - . ID=Physo142935.2;Parent=Physo142935;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_125 . exon 95191 95404 . - . ID=Physo142935.1;Parent=Physo142935;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 ensembl protein_coding_gene 95885 97561 . + . ID=Physo142936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250012;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 95885 97561 . + . ID=Physo142936;Parent=Physo142936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . exon 95885 96060 . + . ID=Physo142936.1;Parent=Physo142936;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_125 . CDS 95945 96060 . + 0 ID=Physo142936;Parent=Physo142936;rank=1 scaffold_125 . CDS 96141 96186 . + 0 ID=Physo142936;Parent=Physo142936;rank=2 scaffold_125 . exon 96141 96186 . + . ID=Physo142936.2;Parent=Physo142936;constitutive=1;ensembl_phase=2;rank=2 scaffold_125 . CDS 96253 96334 . + 0 ID=Physo142936;Parent=Physo142936;rank=3 scaffold_125 . exon 96253 96334 . + . ID=Physo142936.3;Parent=Physo142936;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_125 . CDS 96397 96479 . + 0 ID=Physo142936;Parent=Physo142936;rank=4 scaffold_125 . exon 96397 96479 . + . ID=Physo142936.4;Parent=Physo142936;constitutive=1;ensembl_phase=1;rank=4 scaffold_125 . CDS 96550 96656 . + 0 ID=Physo142936;Parent=Physo142936;rank=5 scaffold_125 . exon 96550 96656 . + . ID=Physo142936.5;Parent=Physo142936;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_125 . CDS 96761 96818 . + 0 ID=Physo142936;Parent=Physo142936;rank=6 scaffold_125 . exon 96761 96818 . + . ID=Physo142936.6;Parent=Physo142936;constitutive=1;ensembl_phase=2;rank=6 scaffold_125 . CDS 96918 97016 . + 0 ID=Physo142936;Parent=Physo142936;rank=7 scaffold_125 . exon 96918 97016 . + . ID=Physo142936.7;Parent=Physo142936;constitutive=1;rank=7 scaffold_125 . CDS 97087 97173 . + 0 ID=Physo142936;Parent=Physo142936;rank=8 scaffold_125 . exon 97087 97173 . + . ID=Physo142936.8;Parent=Physo142936;constitutive=1;rank=8 scaffold_125 . CDS 97244 97465 . + 0 ID=Physo142936;Parent=Physo142936;rank=9 scaffold_125 . exon 97244 97561 . + . ID=Physo142936.9;Parent=Physo142936;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_125 . repeat_region 103507 103541 . ? . description=trf scaffold_125 ensembl protein_coding_gene 97703 98814 . + . ID=Physo142937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250013;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 97703 98814 . + . ID=Physo142937;Parent=Physo142937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 97703 97859 . + 0 ID=Physo142937;Parent=Physo142937;rank=1 scaffold_125 . exon 97703 97859 . + . ID=Physo142937.1;Parent=Physo142937;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 . CDS 97921 97961 . + 0 ID=Physo142937;Parent=Physo142937;rank=2 scaffold_125 . exon 97921 97961 . + . ID=Physo142937.2;Parent=Physo142937;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 98028 98179 . + 0 ID=Physo142937;Parent=Physo142937;rank=3 scaffold_125 . exon 98028 98179 . + . ID=Physo142937.3;Parent=Physo142937;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_125 . CDS 98249 98630 . + 0 ID=Physo142937;Parent=Physo142937;rank=4 scaffold_125 . exon 98249 98630 . + . ID=Physo142937.4;Parent=Physo142937;constitutive=1;ensembl_phase=2;rank=4 scaffold_125 . CDS 98695 98778 . + 0 ID=Physo142937;Parent=Physo142937;rank=5 scaffold_125 . exon 98695 98778 . + . ID=Physo142937.5;Parent=Physo142937;constitutive=1;rank=5 scaffold_125 . CDS 98806 98814 . + 0 ID=Physo142937;Parent=Physo142937;rank=6 scaffold_125 . exon 98806 98814 . + . ID=Physo142937.6;Parent=Physo142937;constitutive=1;rank=6 scaffold_125 ensembl protein_coding_gene 99080 100516 . - . ID=Physo142938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250014;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 99080 100516 . - . ID=Physo142938;Parent=Physo142938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 99080 100516 . - 0 ID=Physo142938;Parent=Physo142938;rank=1 scaffold_125 . exon 99080 100516 . - . ID=Physo142938.1;Parent=Physo142938;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 100767 102257 . - . ID=Physo142939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250015;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 100767 102257 . - . ID=Physo142939;Parent=Physo142939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 100767 102257 . - 0 ID=Physo142939;Parent=Physo142939;rank=1 scaffold_125 . exon 100767 102257 . - . ID=Physo142939.1;Parent=Physo142939;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 104211 106213 . - . ID=Physo142940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250016;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 104211 106213 . - . ID=Physo142940;Parent=Physo142940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 104211 105811 . - 0 ID=Physo142940;Parent=Physo142940;rank=2 scaffold_125 . exon 104211 105811 . - . ID=Physo142940.2;Parent=Physo142940;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 105880 106213 . - 0 ID=Physo142940;Parent=Physo142940;rank=1 scaffold_125 . exon 105880 106213 . - . ID=Physo142940.1;Parent=Physo142940;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 ensembl protein_coding_gene 106616 107926 . - . ID=Physo142941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250017;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 106616 107926 . - . ID=Physo142941;Parent=Physo142941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 106616 107926 . - 0 ID=Physo142941;Parent=Physo142941;rank=1 scaffold_125 . exon 106616 107926 . - . ID=Physo142941.1;Parent=Physo142941;constitutive=1;rank=1 scaffold_125 . biological_region 107541 107545 0.999 + . logic_name=eponine scaffold_125 . biological_region 109131 109133 0.999 + . logic_name=eponine scaffold_125 . biological_region 109590 109591 0.999 + . logic_name=eponine scaffold_125 . biological_region 111137 111138 0.999 - . logic_name=eponine scaffold_125 . repeat_region 111954 111961 . ? . description=dust scaffold_125 . biological_region 115746 115751 0.999 - . logic_name=eponine scaffold_125 . biological_region 116567 116568 0.999 - . logic_name=eponine scaffold_125 . biological_region 116692 116693 0.999 - . logic_name=eponine scaffold_125 ensembl protein_coding_gene 115053 117695 . + . ID=Physo109520;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1250001;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 115053 117695 . + . ID=Physo109520;Parent=Physo109520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 115053 116106 . + 0 ID=Physo109520;Parent=Physo109520;rank=1 scaffold_125 . exon 115053 116106 . + . ID=Physo109520.1;Parent=Physo109520;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 . CDS 116176 116426 . + 0 ID=Physo109520;Parent=Physo109520;rank=2 scaffold_125 . exon 116176 116426 . + . ID=Physo109520.2;Parent=Physo109520;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 116493 117695 . + 0 ID=Physo109520;Parent=Physo109520;rank=3 scaffold_125 . exon 116493 117695 . + . ID=Physo109520.3;Parent=Physo109520;constitutive=1;rank=3 scaffold_125 ensembl protein_coding_gene 108247 109716 . - . ID=Physo142942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250018;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 108247 109716 . - . ID=Physo142942;Parent=Physo142942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 108247 109716 . - 0 ID=Physo142942;Parent=Physo142942;rank=1 scaffold_125 . exon 108247 109716 . - . ID=Physo142942.1;Parent=Physo142942;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 111048 113331 . + . ID=Physo142943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250019;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 111048 113331 . + . ID=Physo142943;Parent=Physo142943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 111048 111077 . + 0 ID=Physo142943;Parent=Physo142943;rank=1 scaffold_125 . exon 111048 111077 . + . ID=Physo142943.1;Parent=Physo142943;constitutive=1;rank=1 scaffold_125 . CDS 111145 111519 . + 0 ID=Physo142943;Parent=Physo142943;rank=2 scaffold_125 . exon 111145 111519 . + . ID=Physo142943.2;Parent=Physo142943;constitutive=1;rank=2 scaffold_125 . CDS 111599 111883 . + 0 ID=Physo142943;Parent=Physo142943;rank=3 scaffold_125 . exon 111599 111883 . + . ID=Physo142943.3;Parent=Physo142943;constitutive=1;rank=3 scaffold_125 . CDS 111975 112103 . + 0 ID=Physo142943;Parent=Physo142943;rank=4 scaffold_125 . exon 111975 112103 . + . ID=Physo142943.4;Parent=Physo142943;constitutive=1;rank=4 scaffold_125 . CDS 112180 112801 . + 0 ID=Physo142943;Parent=Physo142943;rank=5 scaffold_125 . exon 112180 112801 . + . ID=Physo142943.5;Parent=Physo142943;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_125 . CDS 112886 113262 . + 0 ID=Physo142943;Parent=Physo142943;rank=6 scaffold_125 . exon 112886 113331 . + . ID=Physo142943.6;Parent=Physo142943;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_125 ensembl protein_coding_gene 118780 121861 . + . ID=Physo142945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250021;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 118780 121861 . + . ID=Physo142945;Parent=Physo142945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . exon 118780 119258 . + . ID=Physo142945.1;Parent=Physo142945;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_125 . CDS 118931 119258 . + 0 ID=Physo142945;Parent=Physo142945;rank=1 scaffold_125 . CDS 119350 119579 . + 0 ID=Physo142945;Parent=Physo142945;rank=2 scaffold_125 . exon 119350 119579 . + . ID=Physo142945.2;Parent=Physo142945;constitutive=1;ensembl_phase=1;rank=2 scaffold_125 . CDS 119696 119956 . + 0 ID=Physo142945;Parent=Physo142945;rank=3 scaffold_125 . exon 119696 119956 . + . ID=Physo142945.3;Parent=Physo142945;constitutive=1;rank=3 scaffold_125 . CDS 120050 121044 . + 0 ID=Physo142945;Parent=Physo142945;rank=4 scaffold_125 . exon 120050 121044 . + . ID=Physo142945.4;Parent=Physo142945;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_125 . CDS 121120 121861 . + 0 ID=Physo142945;Parent=Physo142945;rank=5 scaffold_125 . exon 121120 121861 . + . ID=Physo142945.5;Parent=Physo142945;constitutive=1;ensembl_phase=2;rank=5 scaffold_125 ensembl protein_coding_gene 122203 123027 . - . ID=Physo142946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250022;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 122203 123027 . - . ID=Physo142946;Parent=Physo142946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 122203 123027 . - 0 ID=Physo142946;Parent=Physo142946;rank=1 scaffold_125 . exon 122203 123027 . - . ID=Physo142946.1;Parent=Physo142946;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 123700 124158 . - . ID=Physo142947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250023;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 123700 124158 . - . ID=Physo142947;Parent=Physo142947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . exon 123700 124158 . - . ID=Physo142947.1;Parent=Physo142947;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_125 . CDS 123812 124156 . - 0 ID=Physo142947;Parent=Physo142947;rank=1 scaffold_125 ensembl protein_coding_gene 124275 125093 . + . ID=Physo142948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250024;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 124275 125093 . + . ID=Physo142948;Parent=Physo142948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 124275 125093 . + 0 ID=Physo142948;Parent=Physo142948;rank=1 scaffold_125 . exon 124275 125093 . + . ID=Physo142948.1;Parent=Physo142948;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 125638 128413 . - . ID=Physo142949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250025;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 125638 128413 . - . ID=Physo142949;Parent=Physo142949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 125638 127728 . - 0 ID=Physo142949;Parent=Physo142949;rank=3 scaffold_125 . exon 125638 127728 . - . ID=Physo142949.3;Parent=Physo142949;constitutive=1;rank=3 scaffold_125 . CDS 127932 127988 . - 0 ID=Physo142949;Parent=Physo142949;rank=2 scaffold_125 . CDS 128225 128413 . - 0 ID=Physo142949;Parent=Physo142949;rank=1 scaffold_125 . biological_region 127551 127552 0.999 + . logic_name=eponine scaffold_125 . biological_region 128268 128273 0.999 + . logic_name=eponine scaffold_125 . biological_region 128627 128629 0.999 - . logic_name=eponine scaffold_125 . biological_region 128863 128866 0.999 + . logic_name=eponine scaffold_125 . biological_region 128865 128867 0.999 - . logic_name=eponine scaffold_125 . biological_region 128885 128889 0.999 - . logic_name=eponine scaffold_125 . biological_region 129095 129098 0.999 + . logic_name=eponine scaffold_125 . repeat_region 129546 129621 . ? . description=trf scaffold_125 . repeat_region 131379 131398 . ? . description=trf scaffold_125 . biological_region 135511 135515 0.999 + . logic_name=eponine scaffold_125 . repeat_region 135523 135562 . ? . description=trf scaffold_125 . exon 127932 127988 . - . ID=Physo142949.2;Parent=Physo142949;constitutive=1;rank=2 scaffold_125 . exon 128225 128413 . - . ID=Physo142949.1;Parent=Physo142949;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 130018 133133 . - . ID=Physo142950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250026;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 130018 133133 . - . ID=Physo142950;Parent=Physo142950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 130018 130821 . - 0 ID=Physo142950;Parent=Physo142950;rank=5 scaffold_125 . exon 130018 130821 . - . ID=Physo142950.5;Parent=Physo142950;constitutive=1;rank=5 scaffold_125 . CDS 130878 131009 . - 0 ID=Physo142950;Parent=Physo142950;rank=4 scaffold_125 . exon 130878 131009 . - . ID=Physo142950.4;Parent=Physo142950;constitutive=1;rank=4 scaffold_125 . CDS 131118 131324 . - 0 ID=Physo142950;Parent=Physo142950;rank=3 scaffold_125 . exon 131118 131324 . - . ID=Physo142950.3;Parent=Physo142950;constitutive=1;rank=3 scaffold_125 . CDS 131486 131897 . - 0 ID=Physo142950;Parent=Physo142950;rank=2 scaffold_125 . exon 131486 131897 . - . ID=Physo142950.2;Parent=Physo142950;constitutive=1;ensembl_phase=2;rank=2 scaffold_125 . CDS 132388 133133 . - 0 ID=Physo142950;Parent=Physo142950;rank=1 scaffold_125 . exon 132388 133133 . - . ID=Physo142950.1;Parent=Physo142950;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_125 ensembl protein_coding_gene 135456 138603 . + . ID=Physo142951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250027;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 135456 138603 . + . ID=Physo142951;Parent=Physo142951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 135456 136025 . + 0 ID=Physo142951;Parent=Physo142951;rank=1 scaffold_125 . exon 135456 136025 . + . ID=Physo142951.1;Parent=Physo142951;constitutive=1;rank=1 scaffold_125 . CDS 136345 136461 . + 0 ID=Physo142951;Parent=Physo142951;rank=2 scaffold_125 . exon 136345 136461 . + . ID=Physo142951.2;Parent=Physo142951;constitutive=1;rank=2 scaffold_125 . CDS 136528 138603 . + 0 ID=Physo142951;Parent=Physo142951;rank=3 scaffold_125 . exon 136528 138603 . + . ID=Physo142951.3;Parent=Physo142951;constitutive=1;rank=3 scaffold_125 . repeat_region 144507 144556 . ? . description=dust scaffold_125 ensembl protein_coding_gene 139980 146042 . - . ID=Physo142952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250028;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 139980 146042 . - . ID=Physo142952;Parent=Physo142952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 139980 141206 . - 0 ID=Physo142952;Parent=Physo142952;rank=5 scaffold_125 . exon 139980 141206 . - . ID=Physo142952.5;Parent=Physo142952;constitutive=1;rank=5 scaffold_125 . CDS 141626 142205 . - 0 ID=Physo142952;Parent=Physo142952;rank=4 scaffold_125 . exon 141626 142205 . - . ID=Physo142952.4;Parent=Physo142952;constitutive=1;ensembl_phase=2;rank=4 scaffold_125 . CDS 142500 144433 . - 0 ID=Physo142952;Parent=Physo142952;rank=3 scaffold_125 . exon 142500 144433 . - . ID=Physo142952.3;Parent=Physo142952;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_125 . CDS 144601 145293 . - 0 ID=Physo142952;Parent=Physo142952;rank=2 scaffold_125 . exon 144601 145293 . - . ID=Physo142952.2;Parent=Physo142952;constitutive=1;rank=2 scaffold_125 . CDS 145431 146042 . - 0 ID=Physo142952;Parent=Physo142952;rank=1 scaffold_125 . exon 145431 146042 . - . ID=Physo142952.1;Parent=Physo142952;constitutive=1;rank=1 scaffold_125 . repeat_region 151933 153853 . + . description=GypsyPi-1c_I-int scaffold_125 . biological_region 152992 152992 0.999 - . logic_name=eponine scaffold_125 . repeat_region 153973 154040 . ? . description=trf scaffold_125 . repeat_region 154171 154451 . + . description=GypsyPi-1c_I-int scaffold_125 . biological_region 154943 154946 0.999 - . logic_name=eponine scaffold_125 . biological_region 155000 155004 0.999 + . logic_name=eponine scaffold_125 . biological_region 155074 155078 0.999 - . logic_name=eponine scaffold_125 . biological_region 155094 155101 0.999 - . logic_name=eponine scaffold_125 . biological_region 155829 155829 0.999 + . logic_name=eponine scaffold_125 ensembl tRNA_gene 155931 156012 . - . ID=EPrPSOG00000000268;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_125 ensembl transcript 155931 156012 . - . ID=EPrPSOT00000000268;Parent=EPrPSOG00000000268;biotype=tRNA;logic_name=ncrna_eg scaffold_125 . exon 155931 156012 . - . ID=EPrPSOE00000000268;Parent=EPrPSOT00000000268;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_125 ensembl protein_coding_gene 147915 150983 . - . ID=Physo142953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250029;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 147915 150983 . - . ID=Physo142953;Parent=Physo142953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 147915 148013 . - 0 ID=Physo142953;Parent=Physo142953;rank=2 scaffold_125 . exon 147915 148013 . - . ID=Physo142953.2;Parent=Physo142953;constitutive=1;rank=2 scaffold_125 . CDS 148209 150983 . - 0 ID=Physo142953;Parent=Physo142953;rank=1 scaffold_125 . exon 148209 150983 . - . ID=Physo142953.1;Parent=Physo142953;constitutive=1;rank=1 scaffold_125 ensembl protein_coding_gene 151938 154213 . + . ID=Physo142954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1250030;logic_name=jgi_physo1_1 scaffold_125 ensembl transcript 151938 154213 . + . ID=Physo142954;Parent=Physo142954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_125 . CDS 151938 152483 . + 0 ID=Physo142954;Parent=Physo142954;rank=1 scaffold_125 . exon 151938 152483 . + . ID=Physo142954.1;Parent=Physo142954;constitutive=1;rank=1 scaffold_125 . CDS 152527 154166 . + 0 ID=Physo142954;Parent=Physo142954;rank=2 scaffold_125 . exon 152527 154166 . + . ID=Physo142954.2;Parent=Physo142954;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_125 . CDS 154207 154213 . + 0 ID=Physo142954;Parent=Physo142954;rank=3 scaffold_125 . exon 154207 154213 . + . ID=Physo142954.3;Parent=Physo142954;constitutive=1;ensembl_phase=2;rank=3 ##gff-version 3 ##sequence-region scaffold_134 1 157054 scaffold_134 . repeat_region 473 502 . ? . description=trf scaffold_134 . repeat_region 473 502 . ? . description=dust scaffold_134 . biological_region 4320 4324 0.999 - . logic_name=eponine scaffold_134 . repeat_region 4595 4602 . ? . description=dust scaffold_134 . repeat_region 4823 4830 . ? . description=dust scaffold_134 . repeat_region 4878 4908 . ? . description=dust scaffold_134 . repeat_region 4889 4908 . ? . description=trf scaffold_134 . biological_region 7373 7378 0.999 - . logic_name=eponine scaffold_134 . biological_region 7820 7822 0.999 - . logic_name=eponine scaffold_134 . biological_region 7837 7839 0.999 - . logic_name=eponine scaffold_134 . repeat_region 9121 9152 . ? . description=dust scaffold_134 . biological_region 9723 9730 0.999 - . logic_name=eponine scaffold_134 . biological_region 9747 9750 0.999 - . logic_name=eponine scaffold_134 ensembl protein_coding_gene 6846 8130 . - . ID=Physo143269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340001;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 6846 8130 . - . ID=Physo143269;Parent=Physo143269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 6846 6949 . - 0 ID=Physo143269;Parent=Physo143269;rank=3 scaffold_134 . exon 6846 6949 . - . ID=Physo143269.3;Parent=Physo143269;constitutive=1;ensembl_phase=1;rank=3 scaffold_134 . CDS 7023 7450 . - 0 ID=Physo143269;Parent=Physo143269;rank=2 scaffold_134 . exon 7023 7450 . - . ID=Physo143269.2;Parent=Physo143269;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_134 . CDS 7529 8130 . - 0 ID=Physo143269;Parent=Physo143269;rank=1 scaffold_134 . exon 7529 8130 . - . ID=Physo143269.1;Parent=Physo143269;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 ensembl protein_coding_gene 9522 11775 . + . ID=Physo143270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340002;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 9522 11775 . + . ID=Physo143270;Parent=Physo143270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 9522 10825 . + 0 ID=Physo143270;Parent=Physo143270;rank=1 scaffold_134 . exon 9522 10825 . + . ID=Physo143270.1;Parent=Physo143270;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 . CDS 10896 11045 . + 0 ID=Physo143270;Parent=Physo143270;rank=2 scaffold_134 . CDS 11111 11441 . + 0 ID=Physo143270;Parent=Physo143270;rank=3 scaffold_134 . CDS 11509 11605 . + 0 ID=Physo143270;Parent=Physo143270;rank=4 scaffold_134 . CDS 11672 11775 . + 0 ID=Physo143270;Parent=Physo143270;rank=5 scaffold_134 ensembl protein_coding_gene 12401 12658 . + . ID=Physo123636;biotype=protein_coding;external_name=estExt_Genewise1.C_1340004;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 12401 12658 . + . ID=Physo123636;Parent=Physo123636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . exon 12401 12658 . + . ID=Physo123636.1;Parent=Physo123636;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_134 . CDS 12403 12657 . + 0 ID=Physo123636;Parent=Physo123636;rank=1 scaffold_134 . exon 10896 11045 . + . ID=Physo143270.2;Parent=Physo143270;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_134 . exon 11111 11441 . + . ID=Physo143270.3;Parent=Physo143270;constitutive=1;ensembl_phase=2;rank=3 scaffold_134 . exon 11509 11605 . + . ID=Physo143270.4;Parent=Physo143270;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_134 . exon 11672 11775 . + . ID=Physo143270.5;Parent=Physo143270;constitutive=1;ensembl_phase=1;rank=5 scaffold_134 ensembl protein_coding_gene 17230 17712 . + . ID=Physo143274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340006;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 17230 17712 . + . ID=Physo143274;Parent=Physo143274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 17230 17712 . + 0 ID=Physo143274;Parent=Physo143274;rank=1 scaffold_134 . exon 17230 17712 . + . ID=Physo143274.1;Parent=Physo143274;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 18120 18596 . + . ID=Physo143275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340007;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 18120 18596 . + . ID=Physo143275;Parent=Physo143275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 18120 18596 . + 0 ID=Physo143275;Parent=Physo143275;rank=1 scaffold_134 . exon 18120 18596 . + . ID=Physo143275.1;Parent=Physo143275;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 18950 20058 . + . ID=Physo143276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340008;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 18950 20058 . + . ID=Physo143276;Parent=Physo143276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 18950 19427 . + 0 ID=Physo143276;Parent=Physo143276;rank=1 scaffold_134 . exon 18950 19427 . + . ID=Physo143276.1;Parent=Physo143276;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 . CDS 19638 19735 . + 0 ID=Physo143276;Parent=Physo143276;rank=2 scaffold_134 . CDS 19759 20058 . + 0 ID=Physo143276;Parent=Physo143276;rank=3 scaffold_134 ensembl protein_coding_gene 12774 13713 . - . ID=Physo158731;biotype=protein_coding;external_name=C_scaffold_134000005;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 12774 13713 . - . ID=Physo158731;Parent=Physo158731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 12774 13280 . - 0 ID=Physo158731;Parent=Physo158731;rank=3 scaffold_134 . exon 12774 13280 . - . ID=Physo158731.3;Parent=Physo158731;constitutive=1;rank=3 scaffold_134 . CDS 13350 13558 . - 0 ID=Physo158731;Parent=Physo158731;rank=2 scaffold_134 . exon 13350 13558 . - . ID=Physo158731.2;Parent=Physo158731;constitutive=1;ensembl_phase=1;rank=2 scaffold_134 . CDS 13632 13713 . - 0 ID=Physo158731;Parent=Physo158731;rank=1 scaffold_134 . exon 13632 13713 . - . ID=Physo158731.1;Parent=Physo158731;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 ensembl protein_coding_gene 14532 15798 . - . ID=Physo158732;biotype=protein_coding;description=Nitrilase [Source:UniProtKB/TrEMBL%3BAcc:B5M4A9];external_name=C_scaffold_134000006;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 14532 15798 . - . ID=Physo158732;Parent=Physo158732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 14532 14681 . - 0 ID=Physo158732;Parent=Physo158732;rank=5 scaffold_134 . exon 14532 14681 . - . ID=Physo158732.5;Parent=Physo158732;constitutive=1;rank=5 scaffold_134 . CDS 14771 15061 . - 0 ID=Physo158732;Parent=Physo158732;rank=4 scaffold_134 . exon 14771 15061 . - . ID=Physo158732.4;Parent=Physo158732;constitutive=1;rank=4 scaffold_134 . CDS 15139 15206 . - 0 ID=Physo158732;Parent=Physo158732;rank=3 scaffold_134 . exon 15139 15206 . - . ID=Physo158732.3;Parent=Physo158732;constitutive=1;ensembl_phase=1;rank=3 scaffold_134 . CDS 15275 15626 . - 0 ID=Physo158732;Parent=Physo158732;rank=2 scaffold_134 . exon 15275 15626 . - . ID=Physo158732.2;Parent=Physo158732;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_134 . CDS 15700 15798 . - 0 ID=Physo158732;Parent=Physo158732;rank=1 scaffold_134 . exon 15700 15798 . - . ID=Physo158732.1;Parent=Physo158732;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 16191 17061 . - . ID=Physo158733;biotype=protein_coding;external_name=C_scaffold_134000007;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 16191 17061 . - . ID=Physo158733;Parent=Physo158733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 16191 16405 . - 0 ID=Physo158733;Parent=Physo158733;rank=4 scaffold_134 . exon 16191 16405 . - . ID=Physo158733.4;Parent=Physo158733;constitutive=1;ensembl_phase=1;rank=4 scaffold_134 . CDS 16477 16585 . - 0 ID=Physo158733;Parent=Physo158733;rank=3 scaffold_134 . exon 16477 16585 . - . ID=Physo158733.3;Parent=Physo158733;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_134 . CDS 16675 16897 . - 0 ID=Physo158733;Parent=Physo158733;rank=2 scaffold_134 . exon 16675 16897 . - . ID=Physo158733.2;Parent=Physo158733;constitutive=1;ensembl_phase=2;rank=2 scaffold_134 . CDS 16928 17061 . - 0 ID=Physo158733;Parent=Physo158733;rank=1 scaffold_134 . exon 16928 17061 . - . ID=Physo158733.1;Parent=Physo158733;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 ensembl protein_coding_gene 18794 18951 . - . ID=Physo158739;biotype=protein_coding;external_name=C_scaffold_134000013;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 18794 18951 . - . ID=Physo158739;Parent=Physo158739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 18794 18868 . - 0 ID=Physo158739;Parent=Physo158739;rank=2 scaffold_134 . exon 18794 18868 . - . ID=Physo158739.2;Parent=Physo158739;constitutive=1;rank=2 scaffold_134 . CDS 18907 18951 . - 0 ID=Physo158739;Parent=Physo158739;rank=1 scaffold_134 . exon 18907 18951 . - . ID=Physo158739.1;Parent=Physo158739;constitutive=1;rank=1 scaffold_134 . biological_region 19894 19896 0.999 - . logic_name=eponine scaffold_134 . biological_region 20395 20399 0.999 + . logic_name=eponine scaffold_134 . biological_region 20595 20600 0.999 - . logic_name=eponine scaffold_134 . biological_region 20963 20969 0.999 - . logic_name=eponine scaffold_134 . biological_region 21020 21021 0.999 + . logic_name=eponine scaffold_134 . biological_region 21090 21091 0.999 - . logic_name=eponine scaffold_134 . repeat_region 21970 21977 . ? . description=dust scaffold_134 . biological_region 28657 28659 0.999 + . logic_name=eponine scaffold_134 . biological_region 28712 28718 0.999 - . logic_name=eponine scaffold_134 . exon 19638 19735 . + . ID=Physo143276.2;Parent=Physo143276;constitutive=1;ensembl_phase=1;rank=2 scaffold_134 . exon 19759 20058 . + . ID=Physo143276.3;Parent=Physo143276;constitutive=1;rank=3 scaffold_134 ensembl protein_coding_gene 20279 20814 . + . ID=Physo143277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340009;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 20279 20814 . + . ID=Physo143277;Parent=Physo143277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 20279 20755 . + 0 ID=Physo143277;Parent=Physo143277;rank=1 scaffold_134 . exon 20279 20814 . + . ID=Physo143277.1;Parent=Physo143277;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_134 ensembl protein_coding_gene 20892 21327 . - . ID=Physo143278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340010;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 20892 21327 . - . ID=Physo143278;Parent=Physo143278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 20892 20972 . - 0 ID=Physo143278;Parent=Physo143278;rank=2 scaffold_134 . exon 20892 20972 . - . ID=Physo143278.2;Parent=Physo143278;constitutive=1;rank=2 scaffold_134 . CDS 20992 21327 . - 0 ID=Physo143278;Parent=Physo143278;rank=1 scaffold_134 . exon 20992 21327 . - . ID=Physo143278.1;Parent=Physo143278;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 25566 26219 . + . ID=Physo143279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340011;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 25566 26219 . + . ID=Physo143279;Parent=Physo143279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 25566 26219 . + 0 ID=Physo143279;Parent=Physo143279;rank=1 scaffold_134 . exon 25566 26219 . + . ID=Physo143279.1;Parent=Physo143279;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 26484 27164 . - . ID=Physo143280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340012;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 26484 27164 . - . ID=Physo143280;Parent=Physo143280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 26484 27164 . - 0 ID=Physo143280;Parent=Physo143280;rank=1 scaffold_134 . exon 26484 27164 . - . ID=Physo143280.1;Parent=Physo143280;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 28339 29139 . - . ID=Physo143281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340013;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 28339 29139 . - . ID=Physo143281;Parent=Physo143281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 28339 29139 . - 0 ID=Physo143281;Parent=Physo143281;rank=1 scaffold_134 . exon 28339 29139 . - . ID=Physo143281.1;Parent=Physo143281;constitutive=1;rank=1 scaffold_134 . repeat_region 36617 36636 . ? . description=trf scaffold_134 . repeat_region 37447 37470 . ? . description=trf scaffold_134 ensembl protein_coding_gene 34374 35072 . + . ID=Physo109550;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1340002;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 34374 35072 . + . ID=Physo109550;Parent=Physo109550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 34374 35072 . + 0 ID=Physo109550;Parent=Physo109550;rank=1 scaffold_134 . exon 34374 35072 . + . ID=Physo109550.1;Parent=Physo109550;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 35405 35857 . + . ID=Physo143283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340015;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 35405 35857 . + . ID=Physo143283;Parent=Physo143283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 35405 35857 . + 0 ID=Physo143283;Parent=Physo143283;rank=1 scaffold_134 . exon 35405 35857 . + . ID=Physo143283.1;Parent=Physo143283;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 36318 37720 . - . ID=Physo143285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340017;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 36318 37720 . - . ID=Physo143285;Parent=Physo143285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . exon 36318 37720 . - . ID=Physo143285.1;Parent=Physo143285;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_134 . CDS 36716 37720 . - 0 ID=Physo143285;Parent=Physo143285;rank=1 scaffold_134 ensembl protein_coding_gene 38544 42206 . - . ID=Physo143286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340018;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 38544 42206 . - . ID=Physo143286;Parent=Physo143286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 38544 40127 . - 0 ID=Physo143286;Parent=Physo143286;rank=3 scaffold_134 . exon 38544 40127 . - . ID=Physo143286.3;Parent=Physo143286;constitutive=1;rank=3 scaffold_134 . CDS 40632 40924 . - 0 ID=Physo143286;Parent=Physo143286;rank=2 scaffold_134 . CDS 41324 42206 . - 0 ID=Physo143286;Parent=Physo143286;rank=1 scaffold_134 . biological_region 42137 42137 0.999 - . logic_name=eponine scaffold_134 . biological_region 42174 42179 0.999 + . logic_name=eponine scaffold_134 . biological_region 42191 42192 0.999 + . logic_name=eponine scaffold_134 . biological_region 42199 42202 0.999 + . logic_name=eponine scaffold_134 . biological_region 42216 42221 0.999 + . logic_name=eponine scaffold_134 . biological_region 42229 42233 0.999 - . logic_name=eponine scaffold_134 . biological_region 42232 42237 0.999 + . logic_name=eponine scaffold_134 . biological_region 42265 42267 0.999 + . logic_name=eponine scaffold_134 . biological_region 42269 42274 0.999 - . logic_name=eponine scaffold_134 . biological_region 42283 42292 0.999 + . logic_name=eponine scaffold_134 . biological_region 42301 42306 0.999 - . logic_name=eponine scaffold_134 . biological_region 42357 42358 0.999 - . logic_name=eponine scaffold_134 . repeat_region 42524 42573 . ? . description=dust scaffold_134 . exon 40632 40924 . - . ID=Physo143286.2;Parent=Physo143286;constitutive=1;ensembl_phase=1;rank=2 scaffold_134 . exon 41324 42206 . - . ID=Physo143286.1;Parent=Physo143286;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 ensembl protein_coding_gene 42628 43236 . + . ID=Physo143287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340019;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 42628 43236 . + . ID=Physo143287;Parent=Physo143287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 42628 43236 . + 0 ID=Physo143287;Parent=Physo143287;rank=1 scaffold_134 . exon 42628 43236 . + . ID=Physo143287.1;Parent=Physo143287;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 43348 46600 . - . ID=Physo143288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340020;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 43348 46600 . - . ID=Physo143288;Parent=Physo143288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . exon 43348 44150 . - . ID=Physo143288.2;Parent=Physo143288;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_134 . CDS 43391 44150 . - 0 ID=Physo143288;Parent=Physo143288;rank=2 scaffold_134 . CDS 44314 46592 . - 0 ID=Physo143288;Parent=Physo143288;rank=1 scaffold_134 . exon 44314 46600 . - . ID=Physo143288.1;Parent=Physo143288;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_134 ensembl protein_coding_gene 48021 49487 . - . ID=Physo143289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340021;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 48021 49487 . - . ID=Physo143289;Parent=Physo143289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 48021 49487 . - 0 ID=Physo143289;Parent=Physo143289;rank=1 scaffold_134 . exon 48021 49487 . - . ID=Physo143289.1;Parent=Physo143289;constitutive=1;rank=1 scaffold_134 . repeat_region 49854 49885 . ? . description=trf scaffold_134 ensembl protein_coding_gene 53648 54571 . - . ID=Physo143290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340022;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 53648 54571 . - . ID=Physo143290;Parent=Physo143290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 53648 54571 . - 0 ID=Physo143290;Parent=Physo143290;rank=1 scaffold_134 . exon 53648 54571 . - . ID=Physo143290.1;Parent=Physo143290;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 58884 61289 . - . ID=Physo143291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340023;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 58884 61289 . - . ID=Physo143291;Parent=Physo143291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 58884 61289 . - 0 ID=Physo143291;Parent=Physo143291;rank=1 scaffold_134 . exon 58884 61289 . - . ID=Physo143291.1;Parent=Physo143291;constitutive=1;rank=1 scaffold_134 . biological_region 61128 61128 0.999 + . logic_name=eponine scaffold_134 . biological_region 62232 62235 0.999 + . logic_name=eponine scaffold_134 . biological_region 62315 62320 0.999 - . logic_name=eponine scaffold_134 . biological_region 63340 63344 0.999 - . logic_name=eponine scaffold_134 . biological_region 63394 63402 0.999 + . logic_name=eponine scaffold_134 ensembl protein_coding_gene 61504 62365 . + . ID=Physo143292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340024;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 61504 62365 . + . ID=Physo143292;Parent=Physo143292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 61504 61753 . + 0 ID=Physo143292;Parent=Physo143292;rank=1 scaffold_134 . exon 61504 61753 . + . ID=Physo143292.1;Parent=Physo143292;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 . CDS 61831 61943 . + 0 ID=Physo143292;Parent=Physo143292;rank=2 scaffold_134 . exon 61831 61943 . + . ID=Physo143292.2;Parent=Physo143292;constitutive=1;ensembl_phase=1;rank=2 scaffold_134 . CDS 62020 62089 . + 0 ID=Physo143292;Parent=Physo143292;rank=3 scaffold_134 . exon 62020 62089 . + . ID=Physo143292.3;Parent=Physo143292;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_134 . CDS 62172 62365 . + 0 ID=Physo143292;Parent=Physo143292;rank=4 scaffold_134 . exon 62172 62365 . + . ID=Physo143292.4;Parent=Physo143292;constitutive=1;ensembl_phase=1;rank=4 scaffold_134 ensembl protein_coding_gene 62502 63689 . - . ID=Physo143293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340025;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 62502 63689 . - . ID=Physo143293;Parent=Physo143293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 62502 63308 . - 0 ID=Physo143293;Parent=Physo143293;rank=2 scaffold_134 . exon 62502 63308 . - . ID=Physo143293.2;Parent=Physo143293;constitutive=1;rank=2 scaffold_134 . CDS 63387 63689 . - 0 ID=Physo143293;Parent=Physo143293;rank=1 scaffold_134 . exon 63387 63689 . - . ID=Physo143293.1;Parent=Physo143293;constitutive=1;rank=1 scaffold_134 . repeat_region 71119 71127 . ? . description=dust scaffold_134 . repeat_region 74705 74811 . ? . description=trf scaffold_134 . repeat_region 74757 74878 . ? . description=trf scaffold_134 ensembl protein_coding_gene 77551 78169 . - . ID=Physo143294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340026;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 77551 78169 . - . ID=Physo143294;Parent=Physo143294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 77551 77713 . - 0 ID=Physo143294;Parent=Physo143294;rank=3 scaffold_134 . exon 77551 77713 . - . ID=Physo143294.3;Parent=Physo143294;constitutive=1;ensembl_phase=2;rank=3 scaffold_134 . CDS 77974 78024 . - 0 ID=Physo143294;Parent=Physo143294;rank=2 scaffold_134 . exon 77974 78024 . - . ID=Physo143294.2;Parent=Physo143294;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_134 . CDS 78051 78169 . - 0 ID=Physo143294;Parent=Physo143294;rank=1 scaffold_134 . exon 78051 78169 . - . ID=Physo143294.1;Parent=Physo143294;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 . repeat_region 81709 82908 . + . description=Gypsy-1-I_PI-int scaffold_134 . repeat_region 83656 83972 . + . description=Gypsy-1-I_PI-int scaffold_134 ensembl protein_coding_gene 79992 80862 . + . ID=Physo143295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340027;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 79992 80862 . + . ID=Physo143295;Parent=Physo143295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 79992 80030 . + 0 ID=Physo143295;Parent=Physo143295;rank=1 scaffold_134 . exon 79992 80030 . + . ID=Physo143295.1;Parent=Physo143295;constitutive=1;rank=1 scaffold_134 . CDS 80104 80862 . + 0 ID=Physo143295;Parent=Physo143295;rank=2 scaffold_134 . exon 80104 80862 . + . ID=Physo143295.2;Parent=Physo143295;constitutive=1;rank=2 scaffold_134 . repeat_region 88924 88943 . ? . description=trf scaffold_134 . repeat_region 90953 90960 . ? . description=dust scaffold_134 . biological_region 92537 92540 0.999 + . logic_name=eponine scaffold_134 . repeat_region 92936 92950 . ? . description=dust scaffold_134 . biological_region 93438 93438 0.999 - . logic_name=eponine scaffold_134 . biological_region 93713 93716 0.999 - . logic_name=eponine scaffold_134 . biological_region 93746 93747 0.999 - . logic_name=eponine scaffold_134 . biological_region 94158 94158 0.999 + . logic_name=eponine scaffold_134 . repeat_region 96755 96804 . ? . description=dust scaffold_134 ensembl protein_coding_gene 89212 89910 . + . ID=Physo143296;biotype=protein_coding;description=PsAvh292 [Source:UniProtKB/TrEMBL%3BAcc:E0W5N5];external_name=estExt_fgenesh1_pg.C_1340028;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 89212 89910 . + . ID=Physo143296;Parent=Physo143296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 89212 89302 . + 0 ID=Physo143296;Parent=Physo143296;rank=1 scaffold_134 . exon 89212 89302 . + . ID=Physo143296.1;Parent=Physo143296;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 . CDS 89339 89910 . + 0 ID=Physo143296;Parent=Physo143296;rank=2 scaffold_134 . exon 89339 89910 . + . ID=Physo143296.2;Parent=Physo143296;constitutive=1;ensembl_phase=1;rank=2 scaffold_134 ensembl protein_coding_gene 92138 92748 . + . ID=Physo143297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340029;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 92138 92748 . + . ID=Physo143297;Parent=Physo143297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 92138 92413 . + 0 ID=Physo143297;Parent=Physo143297;rank=1 scaffold_134 . exon 92138 92413 . + . ID=Physo143297.1;Parent=Physo143297;constitutive=1;rank=1 scaffold_134 . CDS 92461 92748 . + 0 ID=Physo143297;Parent=Physo143297;rank=2 scaffold_134 . exon 92461 92748 . + . ID=Physo143297.2;Parent=Physo143297;constitutive=1;rank=2 scaffold_134 ensembl protein_coding_gene 93104 95434 . + . ID=Physo143298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340030;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 93104 95434 . + . ID=Physo143298;Parent=Physo143298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 93104 95434 . + 0 ID=Physo143298;Parent=Physo143298;rank=1 scaffold_134 . exon 93104 95434 . + . ID=Physo143298.1;Parent=Physo143298;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 99328 100925 . - . ID=Physo143299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340031;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 99328 100925 . - . ID=Physo143299;Parent=Physo143299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 99328 99687 . - 0 ID=Physo143299;Parent=Physo143299;rank=2 scaffold_134 . exon 99328 99687 . - . ID=Physo143299.2;Parent=Physo143299;constitutive=1;rank=2 scaffold_134 . CDS 99738 100925 . - 0 ID=Physo143299;Parent=Physo143299;rank=1 scaffold_134 . exon 99738 100925 . - . ID=Physo143299.1;Parent=Physo143299;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 103134 104060 . - . ID=Physo143300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340032;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 103134 104060 . - . ID=Physo143300;Parent=Physo143300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 103134 103898 . - 0 ID=Physo143300;Parent=Physo143300;rank=2 scaffold_134 . exon 103134 103898 . - . ID=Physo143300.2;Parent=Physo143300;constitutive=1;rank=2 scaffold_134 . CDS 103920 104060 . - 0 ID=Physo143300;Parent=Physo143300;rank=1 scaffold_134 . exon 103920 104060 . - . ID=Physo143300.1;Parent=Physo143300;constitutive=1;rank=1 scaffold_134 . repeat_region 109141 109149 . ? . description=dust scaffold_134 . repeat_region 111178 111185 . ? . description=dust scaffold_134 . repeat_region 114885 114893 . ? . description=dust scaffold_134 . biological_region 115742 115742 0.999 - . logic_name=eponine scaffold_134 . repeat_region 118636 118691 . ? . description=trf scaffold_134 . repeat_region 118802 118845 . ? . description=trf scaffold_134 . repeat_region 121272 121350 . ? . description=trf scaffold_134 . repeat_region 121295 121368 . ? . description=trf scaffold_134 . repeat_region 121376 121450 . ? . description=trf scaffold_134 . repeat_region 121403 121444 . ? . description=trf scaffold_134 ensembl protein_coding_gene 119057 123059 . + . ID=Physo143301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340033;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 119057 123059 . + . ID=Physo143301;Parent=Physo143301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 119057 119714 . + 0 ID=Physo143301;Parent=Physo143301;rank=1 scaffold_134 . exon 119057 119714 . + . ID=Physo143301.1;Parent=Physo143301;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_134 . CDS 119772 120654 . + 0 ID=Physo143301;Parent=Physo143301;rank=2 scaffold_134 . exon 119772 120654 . + . ID=Physo143301.2;Parent=Physo143301;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_134 . CDS 120729 120845 . + 0 ID=Physo143301;Parent=Physo143301;rank=3 scaffold_134 . exon 120729 120845 . + . ID=Physo143301.3;Parent=Physo143301;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_134 . CDS 120961 121232 . + 0 ID=Physo143301;Parent=Physo143301;rank=4 scaffold_134 . exon 120961 121232 . + . ID=Physo143301.4;Parent=Physo143301;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_134 . CDS 121253 121496 . + 0 ID=Physo143301;Parent=Physo143301;rank=5 scaffold_134 . exon 121253 121496 . + . ID=Physo143301.5;Parent=Physo143301;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_134 . CDS 121552 122381 . + 0 ID=Physo143301;Parent=Physo143301;rank=6 scaffold_134 . exon 121552 122381 . + . ID=Physo143301.6;Parent=Physo143301;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_134 . CDS 122860 123059 . + 0 ID=Physo143301;Parent=Physo143301;rank=7 scaffold_134 . exon 122860 123059 . + . ID=Physo143301.7;Parent=Physo143301;constitutive=1;ensembl_phase=1;rank=7 scaffold_134 ensembl protein_coding_gene 123314 127609 . - . ID=Physo143302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340034;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 123314 127609 . - . ID=Physo143302;Parent=Physo143302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 123314 123367 . - 0 ID=Physo143302;Parent=Physo143302;rank=7 scaffold_134 . exon 123314 123367 . - . ID=Physo143302.7;Parent=Physo143302;constitutive=1;rank=7 scaffold_134 . CDS 123399 124547 . - 0 ID=Physo143302;Parent=Physo143302;rank=6 scaffold_134 . exon 123399 124547 . - . ID=Physo143302.6;Parent=Physo143302;constitutive=1;rank=6 scaffold_134 . CDS 124851 124944 . - 0 ID=Physo143302;Parent=Physo143302;rank=5 scaffold_134 . exon 124851 124944 . - . ID=Physo143302.5;Parent=Physo143302;constitutive=1;ensembl_phase=2;rank=5 scaffold_134 . CDS 125111 125384 . - 0 ID=Physo143302;Parent=Physo143302;rank=4 scaffold_134 . exon 125111 125384 . - . ID=Physo143302.4;Parent=Physo143302;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_134 . CDS 125596 125814 . - 0 ID=Physo143302;Parent=Physo143302;rank=3 scaffold_134 . exon 125596 125814 . - . ID=Physo143302.3;Parent=Physo143302;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_134 . CDS 125844 127104 . - 0 ID=Physo143302;Parent=Physo143302;rank=2 scaffold_134 . exon 125844 127104 . - . ID=Physo143302.2;Parent=Physo143302;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_134 . CDS 127172 127609 . - 0 ID=Physo143302;Parent=Physo143302;rank=1 scaffold_134 . exon 127172 127609 . - . ID=Physo143302.1;Parent=Physo143302;constitutive=1;rank=1 scaffold_134 . biological_region 127644 127646 0.999 - . logic_name=eponine scaffold_134 . biological_region 127851 127852 0.999 + . logic_name=eponine scaffold_134 . biological_region 127912 127915 0.999 - . logic_name=eponine scaffold_134 . biological_region 128016 128020 0.999 + . logic_name=eponine scaffold_134 . repeat_region 128035 128047 . ? . description=dust scaffold_134 . biological_region 128376 128379 0.999 - . logic_name=eponine scaffold_134 . biological_region 128411 128414 0.999 - . logic_name=eponine scaffold_134 . biological_region 128433 128438 0.999 + . logic_name=eponine scaffold_134 . biological_region 129523 129526 0.999 + . logic_name=eponine scaffold_134 . biological_region 129620 129621 0.999 - . logic_name=eponine scaffold_134 . repeat_region 130159 130880 . + . description=GypsyPi-1c_I-int scaffold_134 . repeat_region 130891 132540 . + . description=GypsyPi-1c_I-int scaffold_134 . biological_region 131946 131947 0.999 + . logic_name=eponine scaffold_134 . repeat_region 132849 133129 . + . description=GypsyPi-1c_I-int scaffold_134 . biological_region 133667 133672 0.999 + . logic_name=eponine scaffold_134 . repeat_region 136447 136457 . ? . description=dust scaffold_134 ensembl protein_coding_gene 129821 132891 . + . ID=Physo143303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340035;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 129821 132891 . + . ID=Physo143303;Parent=Physo143303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 129821 129900 . + 0 ID=Physo143303;Parent=Physo143303;rank=1 scaffold_134 . exon 129821 129900 . + . ID=Physo143303.1;Parent=Physo143303;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_134 . CDS 130081 130237 . + 0 ID=Physo143303;Parent=Physo143303;rank=2 scaffold_134 . exon 130081 130237 . + . ID=Physo143303.2;Parent=Physo143303;constitutive=1;ensembl_phase=2;rank=2 scaffold_134 . CDS 130270 130686 . + 0 ID=Physo143303;Parent=Physo143303;rank=3 scaffold_134 . exon 130270 130686 . + . ID=Physo143303.3;Parent=Physo143303;constitutive=1;rank=3 scaffold_134 . CDS 130774 131080 . + 0 ID=Physo143303;Parent=Physo143303;rank=4 scaffold_134 . exon 130774 131080 . + . ID=Physo143303.4;Parent=Physo143303;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_134 . CDS 131102 131166 . + 0 ID=Physo143303;Parent=Physo143303;rank=5 scaffold_134 . exon 131102 131166 . + . ID=Physo143303.5;Parent=Physo143303;constitutive=1;ensembl_phase=1;rank=5 scaffold_134 . CDS 131259 131951 . + 0 ID=Physo143303;Parent=Physo143303;rank=6 scaffold_134 . exon 131259 131951 . + . ID=Physo143303.6;Parent=Physo143303;constitutive=1;rank=6 scaffold_134 . CDS 132030 132844 . + 0 ID=Physo143303;Parent=Physo143303;rank=7 scaffold_134 . exon 132030 132844 . + . ID=Physo143303.7;Parent=Physo143303;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_134 . CDS 132885 132891 . + 0 ID=Physo143303;Parent=Physo143303;rank=8 scaffold_134 . exon 132885 132891 . + . ID=Physo143303.8;Parent=Physo143303;constitutive=1;ensembl_phase=2;rank=8 scaffold_134 . repeat_region 137855 137901 . ? . description=trf scaffold_134 ensembl protein_coding_gene 146352 149573 . + . ID=Physo143304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340036;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 146352 149573 . + . ID=Physo143304;Parent=Physo143304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 146352 146912 . + 0 ID=Physo143304;Parent=Physo143304;rank=1 scaffold_134 . exon 146352 146912 . + . ID=Physo143304.1;Parent=Physo143304;constitutive=1;rank=1 scaffold_134 . CDS 147089 147382 . + 0 ID=Physo143304;Parent=Physo143304;rank=2 scaffold_134 . exon 147089 147382 . + . ID=Physo143304.2;Parent=Physo143304;constitutive=1;rank=2 scaffold_134 . CDS 147426 149573 . + 0 ID=Physo143304;Parent=Physo143304;rank=3 scaffold_134 . biological_region 147696 147697 0.999 - . logic_name=eponine scaffold_134 . repeat_region 153711 153995 . ? . description=dust scaffold_134 . exon 147426 149573 . + . ID=Physo143304.3;Parent=Physo143304;constitutive=1;rank=3 scaffold_134 ensembl protein_coding_gene 150084 153693 . - . ID=Physo143305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340037;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 150084 153693 . - . ID=Physo143305;Parent=Physo143305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 150084 150802 . - 0 ID=Physo143305;Parent=Physo143305;rank=3 scaffold_134 . exon 150084 150802 . - . ID=Physo143305.3;Parent=Physo143305;constitutive=1;ensembl_phase=1;rank=3 scaffold_134 . CDS 151138 152035 . - 0 ID=Physo143305;Parent=Physo143305;rank=2 scaffold_134 . exon 151138 152035 . - . ID=Physo143305.2;Parent=Physo143305;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_134 . CDS 152182 153693 . - 0 ID=Physo143305;Parent=Physo143305;rank=1 scaffold_134 . exon 152182 153693 . - . ID=Physo143305.1;Parent=Physo143305;constitutive=1;rank=1 scaffold_134 ensembl protein_coding_gene 155444 156886 . - . ID=Physo143306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1340038;logic_name=jgi_physo1_1 scaffold_134 ensembl transcript 155444 156886 . - . ID=Physo143306;Parent=Physo143306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_134 . CDS 155444 156145 . - 0 ID=Physo143306;Parent=Physo143306;rank=1 scaffold_134 . exon 155444 156259 . - . ID=Physo143306.2;Parent=Physo143306;constitutive=1;ensembl_phase=-1;rank=2 scaffold_134 . exon 156299 156886 . - . ID=Physo143306.1;Parent=Physo143306;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_133 1 157948 scaffold_133 . biological_region 3248 3250 0.999 + . logic_name=eponine scaffold_133 . biological_region 6130 6137 0.999 + . logic_name=eponine scaffold_133 . repeat_region 10595 10645 . ? . description=dust scaffold_133 . repeat_region 11122 11131 . ? . description=dust scaffold_133 . repeat_region 11678 11730 . ? . description=trf scaffold_133 . repeat_region 12263 12420 . - . description=GypsyPi-1c_I-int scaffold_133 . repeat_region 12760 12819 . ? . description=trf scaffold_133 . repeat_region 16708 16775 . ? . description=trf scaffold_133 . repeat_region 17664 17701 . ? . description=dust scaffold_133 ensembl protein_coding_gene 19407 21651 . + . ID=Physo143239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330001;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 19407 21651 . + . ID=Physo143239;Parent=Physo143239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 19407 19844 . + 0 ID=Physo143239;Parent=Physo143239;rank=1 scaffold_133 . exon 19407 19844 . + . ID=Physo143239.1;Parent=Physo143239;constitutive=1;rank=1 scaffold_133 . CDS 19874 20071 . + 0 ID=Physo143239;Parent=Physo143239;rank=2 scaffold_133 . CDS 20122 20663 . + 0 ID=Physo143239;Parent=Physo143239;rank=3 scaffold_133 . CDS 20716 20788 . + 0 ID=Physo143239;Parent=Physo143239;rank=4 scaffold_133 . CDS 20908 21651 . + 0 ID=Physo143239;Parent=Physo143239;rank=5 scaffold_133 . biological_region 25993 25993 0.999 + . logic_name=eponine scaffold_133 ensembl pseudogenic_tRNA 26863 26935 . + . ID=EPrPSOG00000000197;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_133 ensembl transcript 26863 26935 . + . ID=EPrPSOT00000000197;Parent=EPrPSOG00000000197;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_133 . exon 26863 26935 . + . ID=EPrPSOE00000000197;Parent=EPrPSOT00000000197;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 ensembl protein_coding_gene 27991 28425 . + . ID=Physo123621;biotype=protein_coding;external_name=estExt_Genewise1.C_1330005;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 27991 28425 . + . ID=Physo123621;Parent=Physo123621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . exon 27991 28425 . + . ID=Physo123621.1;Parent=Physo123621;constitutive=1;ensembl_phase=-1;rank=1 scaffold_133 . CDS 28090 28425 . + 0 ID=Physo123621;Parent=Physo123621;rank=1 scaffold_133 . exon 19874 20071 . + . ID=Physo143239.2;Parent=Physo143239;constitutive=1;rank=2 scaffold_133 . exon 20122 20663 . + . ID=Physo143239.3;Parent=Physo143239;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_133 . exon 20716 20788 . + . ID=Physo143239.4;Parent=Physo143239;constitutive=1;ensembl_phase=2;rank=4 scaffold_133 . exon 20908 21651 . + . ID=Physo143239.5;Parent=Physo143239;constitutive=1;rank=5 scaffold_133 ensembl protein_coding_gene 27183 27998 . + . ID=Physo143240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330002;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 27183 27998 . + . ID=Physo143240;Parent=Physo143240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 27183 27998 . + 0 ID=Physo143240;Parent=Physo143240;rank=1 scaffold_133 . exon 27183 27998 . + . ID=Physo143240.1;Parent=Physo143240;constitutive=1;rank=1 scaffold_133 . repeat_region 30572 30581 . ? . description=dust scaffold_133 . repeat_region 32364 32383 . ? . description=trf scaffold_133 . repeat_region 33497 33521 . ? . description=trf scaffold_133 ensembl protein_coding_gene 29710 30153 . - . ID=Physo143242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330004;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 29710 30153 . - . ID=Physo143242;Parent=Physo143242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 29710 29819 . - 0 ID=Physo143242;Parent=Physo143242;rank=2 scaffold_133 . exon 29710 29819 . - . ID=Physo143242.2;Parent=Physo143242;constitutive=1;ensembl_phase=1;rank=2 scaffold_133 . CDS 29922 30153 . - 0 ID=Physo143242;Parent=Physo143242;rank=1 scaffold_133 . exon 29922 30153 . - . ID=Physo143242.1;Parent=Physo143242;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 ensembl protein_coding_gene 31602 35157 . - . ID=Physo143243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330005;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 31602 35157 . - . ID=Physo143243;Parent=Physo143243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 31602 31642 . - 0 ID=Physo143243;Parent=Physo143243;rank=7 scaffold_133 . exon 31602 31642 . - . ID=Physo143243.7;Parent=Physo143243;constitutive=1;ensembl_phase=1;rank=7 scaffold_133 . CDS 31719 32445 . - 0 ID=Physo143243;Parent=Physo143243;rank=6 scaffold_133 . exon 31719 32445 . - . ID=Physo143243.6;Parent=Physo143243;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_133 . CDS 32663 33356 . - 0 ID=Physo143243;Parent=Physo143243;rank=5 scaffold_133 . exon 32663 33356 . - . ID=Physo143243.5;Parent=Physo143243;constitutive=1;ensembl_phase=2;rank=5 scaffold_133 . CDS 33400 33484 . - 0 ID=Physo143243;Parent=Physo143243;rank=4 scaffold_133 . exon 33400 33484 . - . ID=Physo143243.4;Parent=Physo143243;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_133 . CDS 34067 34257 . - 0 ID=Physo143243;Parent=Physo143243;rank=3 scaffold_133 . exon 34067 34257 . - . ID=Physo143243.3;Parent=Physo143243;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_133 . CDS 34415 34560 . - 0 ID=Physo143243;Parent=Physo143243;rank=2 scaffold_133 . exon 34415 34560 . - . ID=Physo143243.2;Parent=Physo143243;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_133 . CDS 34648 35157 . - 0 ID=Physo143243;Parent=Physo143243;rank=1 scaffold_133 . exon 34648 35157 . - . ID=Physo143243.1;Parent=Physo143243;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 36448 40216 . - . ID=Physo143244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330006;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 36448 40216 . - . ID=Physo143244;Parent=Physo143244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 36448 37755 . - 0 ID=Physo143244;Parent=Physo143244;rank=3 scaffold_133 . exon 36448 37755 . - . ID=Physo143244.3;Parent=Physo143244;constitutive=1;rank=3 scaffold_133 . CDS 37829 40073 . - 0 ID=Physo143244;Parent=Physo143244;rank=2 scaffold_133 . exon 37829 40073 . - . ID=Physo143244.2;Parent=Physo143244;constitutive=1;ensembl_phase=2;rank=2 scaffold_133 . CDS 40152 40216 . - 0 ID=Physo143244;Parent=Physo143244;rank=1 scaffold_133 . biological_region 39518 39521 0.999 + . logic_name=eponine scaffold_133 . repeat_region 39620 39686 . + . description=(TCG)n scaffold_133 . biological_region 41566 41575 0.999 - . logic_name=eponine scaffold_133 . biological_region 42413 42414 0.999 + . logic_name=eponine scaffold_133 . biological_region 46782 46786 0.999 - . logic_name=eponine scaffold_133 . exon 40152 40216 . - . ID=Physo143244.1;Parent=Physo143244;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_133 ensembl protein_coding_gene 42650 47174 . + . ID=Physo143245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330007;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 42650 47174 . + . ID=Physo143245;Parent=Physo143245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 42650 42652 . + 0 ID=Physo143245;Parent=Physo143245;rank=1 scaffold_133 . exon 42650 42652 . + . ID=Physo143245.1;Parent=Physo143245;constitutive=1;rank=1 scaffold_133 . CDS 42927 43480 . + 0 ID=Physo143245;Parent=Physo143245;rank=2 scaffold_133 . exon 42927 43480 . + . ID=Physo143245.2;Parent=Physo143245;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_133 . CDS 44033 47174 . + 0 ID=Physo143245;Parent=Physo143245;rank=3 scaffold_133 . exon 44033 47174 . + . ID=Physo143245.3;Parent=Physo143245;constitutive=1;ensembl_phase=2;rank=3 scaffold_133 . repeat_region 49535 49582 . ? . description=trf scaffold_133 . repeat_region 52651 53166 . + . description=GypsyPi-1c_I-int scaffold_133 . repeat_region 53755 55020 . + . description=GypsyPi-1c_I-int scaffold_133 . repeat_region 55037 55807 . + . description=GypsyPi-1c_I-int scaffold_133 . repeat_region 56305 56439 . + . description=GypsyPi-1c_I-int scaffold_133 . repeat_region 58505 58578 . ? . description=trf scaffold_133 ensembl protein_coding_gene 51660 54354 . + . ID=Physo143246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330008;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 51660 54354 . + . ID=Physo143246;Parent=Physo143246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 51660 52006 . + 0 ID=Physo143246;Parent=Physo143246;rank=1 scaffold_133 . exon 51660 52006 . + . ID=Physo143246.1;Parent=Physo143246;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_133 . CDS 52027 52622 . + 0 ID=Physo143246;Parent=Physo143246;rank=2 scaffold_133 . exon 52027 52622 . + . ID=Physo143246.2;Parent=Physo143246;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_133 . CDS 52784 52932 . + 0 ID=Physo143246;Parent=Physo143246;rank=3 scaffold_133 . exon 52784 52932 . + . ID=Physo143246.3;Parent=Physo143246;constitutive=1;ensembl_phase=1;rank=3 scaffold_133 . CDS 53254 54354 . + 0 ID=Physo143246;Parent=Physo143246;rank=4 scaffold_133 . exon 53254 54354 . + . ID=Physo143246.4;Parent=Physo143246;constitutive=1;rank=4 scaffold_133 ensembl protein_coding_gene 55788 57532 . - . ID=Physo143247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330009;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 55788 57532 . - . ID=Physo143247;Parent=Physo143247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 55788 55997 . - 0 ID=Physo143247;Parent=Physo143247;rank=2 scaffold_133 . exon 55788 55997 . - . ID=Physo143247.2;Parent=Physo143247;constitutive=1;rank=2 scaffold_133 . CDS 56048 57532 . - 0 ID=Physo143247;Parent=Physo143247;rank=1 scaffold_133 . exon 56048 57532 . - . ID=Physo143247.1;Parent=Physo143247;constitutive=1;rank=1 scaffold_133 . repeat_region 63508 63546 . ? . description=dust scaffold_133 . biological_region 66277 66282 0.999 + . logic_name=eponine scaffold_133 . biological_region 66305 66307 0.999 - . logic_name=eponine scaffold_133 ensembl protein_coding_gene 68749 69189 . + . ID=Physo109548;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1330002;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 68749 69189 . + . ID=Physo109548;Parent=Physo109548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 68749 69189 . + 0 ID=Physo109548;Parent=Physo109548;rank=1 scaffold_133 . exon 68749 69189 . + . ID=Physo109548.1;Parent=Physo109548;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 66202 68640 . + . ID=Physo143248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330010;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 66202 68640 . + . ID=Physo143248;Parent=Physo143248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 66202 66475 . + 0 ID=Physo143248;Parent=Physo143248;rank=1 scaffold_133 . exon 66202 66475 . + . ID=Physo143248.1;Parent=Physo143248;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 . CDS 66517 67138 . + 0 ID=Physo143248;Parent=Physo143248;rank=2 scaffold_133 . exon 66517 67138 . + . ID=Physo143248.2;Parent=Physo143248;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_133 . CDS 67235 67381 . + 0 ID=Physo143248;Parent=Physo143248;rank=3 scaffold_133 . exon 67235 67381 . + . ID=Physo143248.3;Parent=Physo143248;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_133 . CDS 67485 68640 . + 0 ID=Physo143248;Parent=Physo143248;rank=4 scaffold_133 . exon 67485 68640 . + . ID=Physo143248.4;Parent=Physo143248;constitutive=1;ensembl_phase=2;rank=4 scaffold_133 . repeat_region 66878 69255 . + . description=GypsyPi-1c_I-int scaffold_133 . repeat_region 69378 69436 . ? . description=trf scaffold_133 . repeat_region 72840 72882 . ? . description=trf scaffold_133 . repeat_region 74392 74442 . ? . description=trf scaffold_133 ensembl protein_coding_gene 69862 71366 . - . ID=Physo143250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330012;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 69862 71366 . - . ID=Physo143250;Parent=Physo143250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 69862 70167 . - 0 ID=Physo143250;Parent=Physo143250;rank=4 scaffold_133 . exon 69862 70167 . - . ID=Physo143250.4;Parent=Physo143250;constitutive=1;rank=4 scaffold_133 . CDS 70325 70339 . - 0 ID=Physo143250;Parent=Physo143250;rank=3 scaffold_133 . exon 70325 70339 . - . ID=Physo143250.3;Parent=Physo143250;constitutive=1;rank=3 scaffold_133 . CDS 70380 70797 . - 0 ID=Physo143250;Parent=Physo143250;rank=2 scaffold_133 . exon 70380 70797 . - . ID=Physo143250.2;Parent=Physo143250;constitutive=1;ensembl_phase=2;rank=2 scaffold_133 . CDS 70870 71366 . - 0 ID=Physo143250;Parent=Physo143250;rank=1 scaffold_133 . exon 70870 71366 . - . ID=Physo143250.1;Parent=Physo143250;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_133 ensembl protein_coding_gene 75597 77189 . + . ID=Physo143251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330013;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 75597 77189 . + . ID=Physo143251;Parent=Physo143251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 75597 77021 . + 0 ID=Physo143251;Parent=Physo143251;rank=1 scaffold_133 . exon 75597 77021 . + . ID=Physo143251.1;Parent=Physo143251;constitutive=1;rank=1 scaffold_133 . CDS 77178 77189 . + 0 ID=Physo143251;Parent=Physo143251;rank=2 scaffold_133 . exon 77178 77189 . + . ID=Physo143251.2;Parent=Physo143251;constitutive=1;rank=2 scaffold_133 ensembl protein_coding_gene 78417 79245 . + . ID=Physo143252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330014;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 78417 79245 . + . ID=Physo143252;Parent=Physo143252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 78417 78483 . + 0 ID=Physo143252;Parent=Physo143252;rank=1 scaffold_133 . exon 78417 78483 . + . ID=Physo143252.1;Parent=Physo143252;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 . CDS 78544 79082 . + 0 ID=Physo143252;Parent=Physo143252;rank=2 scaffold_133 . exon 78544 79245 . + . ID=Physo143252.2;Parent=Physo143252;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_133 . biological_region 78988 78991 0.999 + . logic_name=eponine scaffold_133 . biological_region 82581 82582 0.999 + . logic_name=eponine scaffold_133 . repeat_region 83132 83166 . ? . description=dust scaffold_133 . repeat_region 85761 85768 . ? . description=dust scaffold_133 . repeat_region 87603 87616 . ? . description=dust scaffold_133 . biological_region 88746 88746 0.999 + . logic_name=eponine scaffold_133 . biological_region 88791 88793 0.999 - . logic_name=eponine scaffold_133 ensembl protein_coding_gene 82584 83411 . - . ID=Physo143253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330015;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 82584 83411 . - . ID=Physo143253;Parent=Physo143253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 82584 83411 . - 0 ID=Physo143253;Parent=Physo143253;rank=1 scaffold_133 . exon 82584 83411 . - . ID=Physo143253.1;Parent=Physo143253;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 84799 85248 . + . ID=Physo143254;biotype=protein_coding;description=PsAvh185 [Source:UniProtKB/TrEMBL%3BAcc:E0W5N3];external_name=estExt_fgenesh1_pg.C_1330016;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 84799 85248 . + . ID=Physo143254;Parent=Physo143254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 84799 85248 . + 0 ID=Physo143254;Parent=Physo143254;rank=1 scaffold_133 . exon 84799 85248 . + . ID=Physo143254.1;Parent=Physo143254;constitutive=1;rank=1 scaffold_133 . repeat_region 97246 97569 . + . description=GypsyPi-1c_I-int scaffold_133 . repeat_region 97692 97741 . ? . description=trf scaffold_133 . repeat_region 97872 98151 . + . description=GypsyPi-1c_I-int scaffold_133 ensembl protein_coding_gene 97500 98206 . + . ID=Physo143255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330017;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 97500 98206 . + . ID=Physo143255;Parent=Physo143255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 97500 97929 . + 0 ID=Physo143255;Parent=Physo143255;rank=1 scaffold_133 . exon 97500 97929 . + . ID=Physo143255.1;Parent=Physo143255;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 . CDS 98004 98206 . + 0 ID=Physo143255;Parent=Physo143255;rank=2 scaffold_133 . exon 98004 98206 . + . ID=Physo143255.2;Parent=Physo143255;constitutive=1;ensembl_phase=1;rank=2 scaffold_133 ensembl protein_coding_gene 98644 99678 . - . ID=Physo143256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330018;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 98644 99678 . - . ID=Physo143256;Parent=Physo143256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 98644 99678 . - 0 ID=Physo143256;Parent=Physo143256;rank=1 scaffold_133 . exon 98644 99678 . - . ID=Physo143256.1;Parent=Physo143256;constitutive=1;rank=1 scaffold_133 . biological_region 99311 99319 0.999 + . logic_name=eponine scaffold_133 . biological_region 99314 99315 0.999 - . logic_name=eponine scaffold_133 . biological_region 99341 99344 0.999 + . logic_name=eponine scaffold_133 . biological_region 99430 99433 0.999 - . logic_name=eponine scaffold_133 . repeat_region 103600 103883 . - . description=Gypsy-2-I_PI-int scaffold_133 . repeat_region 105202 105215 . ? . description=dust scaffold_133 ensembl protein_coding_gene 106810 108772 . + . ID=Physo143257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330019;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 106810 108772 . + . ID=Physo143257;Parent=Physo143257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 106810 107128 . + 0 ID=Physo143257;Parent=Physo143257;rank=1 scaffold_133 . exon 106810 107128 . + . ID=Physo143257.1;Parent=Physo143257;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 . CDS 107415 108772 . + 0 ID=Physo143257;Parent=Physo143257;rank=2 scaffold_133 . exon 107415 108772 . + . ID=Physo143257.2;Parent=Physo143257;constitutive=1;ensembl_phase=1;rank=2 scaffold_133 . repeat_region 113052 113087 . ? . description=trf scaffold_133 . repeat_region 113052 113096 . ? . description=trf scaffold_133 . repeat_region 113639 113691 . ? . description=trf scaffold_133 ensembl protein_coding_gene 113405 115530 . + . ID=Physo123632;biotype=protein_coding;external_name=estExt_Genewise1.C_1330016;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 113405 115530 . + . ID=Physo123632;Parent=Physo123632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . exon 113405 114015 . + . ID=Physo123632.1;Parent=Physo123632;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_133 . CDS 113423 114015 . + 0 ID=Physo123632;Parent=Physo123632;rank=1 scaffold_133 . CDS 114277 114628 . + 0 ID=Physo123632;Parent=Physo123632;rank=2 scaffold_133 . exon 114277 114628 . + . ID=Physo123632.2;Parent=Physo123632;constitutive=1;ensembl_phase=2;rank=2 scaffold_133 . CDS 114674 115266 . + 0 ID=Physo123632;Parent=Physo123632;rank=3 scaffold_133 . exon 114674 115266 . + . ID=Physo123632.3;Parent=Physo123632;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_133 . CDS 115356 115530 . + 0 ID=Physo123632;Parent=Physo123632;rank=4 scaffold_133 . exon 115356 115530 . + . ID=Physo123632.4;Parent=Physo123632;constitutive=1;ensembl_phase=2;rank=4 scaffold_133 ensembl protein_coding_gene 109731 111834 . - . ID=Physo143258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330020;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 109731 111834 . - . ID=Physo143258;Parent=Physo143258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 109731 111785 . - 0 ID=Physo143258;Parent=Physo143258;rank=1 scaffold_133 . exon 109731 111834 . - . ID=Physo143258.1;Parent=Physo143258;constitutive=1;ensembl_phase=-1;rank=1 scaffold_133 ensembl protein_coding_gene 116390 117629 . + . ID=Physo158725;biotype=protein_coding;external_name=C_scaffold_133000001;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 116390 117629 . + . ID=Physo158725;Parent=Physo158725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 116390 116641 . + 0 ID=Physo158725;Parent=Physo158725;rank=1 scaffold_133 . exon 116390 116641 . + . ID=Physo158725.1;Parent=Physo158725;constitutive=1;rank=1 scaffold_133 . CDS 116781 117220 . + 0 ID=Physo158725;Parent=Physo158725;rank=2 scaffold_133 . exon 116781 117220 . + . ID=Physo158725.2;Parent=Physo158725;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_133 . CDS 117304 117314 . + 0 ID=Physo158725;Parent=Physo158725;rank=3 scaffold_133 . exon 117304 117314 . + . ID=Physo158725.3;Parent=Physo158725;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_133 . CDS 117508 117629 . + 0 ID=Physo158725;Parent=Physo158725;rank=4 scaffold_133 . exon 117508 117629 . + . ID=Physo158725.4;Parent=Physo158725;constitutive=1;ensembl_phase=1;rank=4 scaffold_133 ensembl protein_coding_gene 117774 119444 . - . ID=Physo158726;biotype=protein_coding;external_name=C_scaffold_133000002;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 117774 119444 . - . ID=Physo158726;Parent=Physo158726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 117774 118186 . - 0 ID=Physo158726;Parent=Physo158726;rank=2 scaffold_133 . exon 117774 118186 . - . ID=Physo158726.2;Parent=Physo158726;constitutive=1;ensembl_phase=1;rank=2 scaffold_133 . CDS 118982 119444 . - 0 ID=Physo158726;Parent=Physo158726;rank=1 scaffold_133 . biological_region 125132 125134 0.999 - . logic_name=eponine scaffold_133 . biological_region 125158 125165 0.999 + . logic_name=eponine scaffold_133 . repeat_region 128187 128194 . ? . description=dust scaffold_133 . exon 118982 119444 . - . ID=Physo158726.1;Parent=Physo158726;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 . repeat_region 128552 128571 . ? . description=trf scaffold_133 . repeat_region 132877 132902 . ? . description=trf scaffold_133 . repeat_region 133535 133717 . + . description=GypsyPi-1c_LTR scaffold_133 . repeat_region 133718 140467 . + . description=GypsyPi-1c_I-int scaffold_133 . repeat_region 135558 135720 . ? . description=trf scaffold_133 . repeat_region 135703 135800 . ? . description=trf scaffold_133 ensembl protein_coding_gene 130272 132545 . - . ID=Physo143262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330024;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 130272 132545 . - . ID=Physo143262;Parent=Physo143262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 130272 132545 . - 0 ID=Physo143262;Parent=Physo143262;rank=1 scaffold_133 . exon 130272 132545 . - . ID=Physo143262.1;Parent=Physo143262;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 133805 138696 . + . ID=Physo143263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330025;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 133805 138696 . + . ID=Physo143263;Parent=Physo143263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 133805 134041 . + 0 ID=Physo143263;Parent=Physo143263;rank=1 scaffold_133 . exon 133805 134041 . + . ID=Physo143263.1;Parent=Physo143263;constitutive=1;rank=1 scaffold_133 . CDS 134240 134805 . + 0 ID=Physo143263;Parent=Physo143263;rank=2 scaffold_133 . exon 134240 134805 . + . ID=Physo143263.2;Parent=Physo143263;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_133 . CDS 134841 135453 . + 0 ID=Physo143263;Parent=Physo143263;rank=3 scaffold_133 . exon 134841 135453 . + . ID=Physo143263.3;Parent=Physo143263;constitutive=1;ensembl_phase=2;rank=3 scaffold_133 . CDS 135488 135559 . + 0 ID=Physo143263;Parent=Physo143263;rank=4 scaffold_133 . exon 135488 135559 . + . ID=Physo143263.4;Parent=Physo143263;constitutive=1;rank=4 scaffold_133 . CDS 135648 136441 . + 0 ID=Physo143263;Parent=Physo143263;rank=5 scaffold_133 . exon 135648 136441 . + . ID=Physo143263.5;Parent=Physo143263;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_133 . CDS 136540 137280 . + 0 ID=Physo143263;Parent=Physo143263;rank=6 scaffold_133 . exon 136540 137280 . + . ID=Physo143263.6;Parent=Physo143263;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_133 . CDS 137315 138641 . + 0 ID=Physo143263;Parent=Physo143263;rank=7 scaffold_133 . exon 137315 138641 . + . ID=Physo143263.7;Parent=Physo143263;constitutive=1;ensembl_phase=2;rank=7 scaffold_133 . CDS 138688 138696 . + 0 ID=Physo143263;Parent=Physo143263;rank=8 scaffold_133 . biological_region 138402 138406 0.999 - . logic_name=eponine scaffold_133 . biological_region 139088 139088 0.999 + . logic_name=eponine scaffold_133 . biological_region 140911 140914 0.999 - . logic_name=eponine scaffold_133 . biological_region 140919 140923 0.999 - . logic_name=eponine scaffold_133 . biological_region 142604 142611 0.999 - . logic_name=eponine scaffold_133 . repeat_region 143060 143109 . ? . description=dust scaffold_133 . exon 138688 138696 . + . ID=Physo143263.8;Parent=Physo143263;constitutive=1;rank=8 scaffold_133 ensembl protein_coding_gene 138979 140980 . - . ID=Physo143264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330026;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 138979 140980 . - . ID=Physo143264;Parent=Physo143264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 138979 139990 . - 0 ID=Physo143264;Parent=Physo143264;rank=4 scaffold_133 . exon 138979 139990 . - . ID=Physo143264.4;Parent=Physo143264;constitutive=1;ensembl_phase=2;rank=4 scaffold_133 . CDS 140065 140338 . - 0 ID=Physo143264;Parent=Physo143264;rank=3 scaffold_133 . exon 140065 140338 . - . ID=Physo143264.3;Parent=Physo143264;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_133 . CDS 140380 140752 . - 0 ID=Physo143264;Parent=Physo143264;rank=2 scaffold_133 . exon 140380 140752 . - . ID=Physo143264.2;Parent=Physo143264;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_133 . CDS 140846 140980 . - 0 ID=Physo143264;Parent=Physo143264;rank=1 scaffold_133 . exon 140846 140980 . - . ID=Physo143264.1;Parent=Physo143264;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 143320 146970 . - . ID=Physo143265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330027;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 143320 146970 . - . ID=Physo143265;Parent=Physo143265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 143320 143881 . - 0 ID=Physo143265;Parent=Physo143265;rank=3 scaffold_133 . exon 143320 143881 . - . ID=Physo143265.3;Parent=Physo143265;constitutive=1;ensembl_phase=2;rank=3 scaffold_133 . CDS 143963 146381 . - 0 ID=Physo143265;Parent=Physo143265;rank=2 scaffold_133 . exon 143963 146381 . - . ID=Physo143265.2;Parent=Physo143265;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_133 . CDS 146850 146970 . - 0 ID=Physo143265;Parent=Physo143265;rank=1 scaffold_133 . exon 146850 146970 . - . ID=Physo143265.1;Parent=Physo143265;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_133 ensembl protein_coding_gene 151009 152167 . + . ID=Physo143266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330028;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 151009 152167 . + . ID=Physo143266;Parent=Physo143266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . exon 151009 152167 . + . ID=Physo143266.1;Parent=Physo143266;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_133 . CDS 151081 151959 . + 0 ID=Physo143266;Parent=Physo143266;rank=1 scaffold_133 ensembl protein_coding_gene 154703 155500 . - . ID=Physo143267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330029;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 154703 155500 . - . ID=Physo143267;Parent=Physo143267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 154703 155500 . - 0 ID=Physo143267;Parent=Physo143267;rank=1 scaffold_133 . exon 154703 155500 . - . ID=Physo143267.1;Parent=Physo143267;constitutive=1;rank=1 scaffold_133 ensembl protein_coding_gene 155826 156778 . + . ID=Physo143268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1330030;logic_name=jgi_physo1_1 scaffold_133 ensembl transcript 155826 156778 . + . ID=Physo143268;Parent=Physo143268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_133 . CDS 155826 155924 . + 0 ID=Physo143268;Parent=Physo143268;rank=1 scaffold_133 . exon 155826 155924 . + . ID=Physo143268.1;Parent=Physo143268;constitutive=1;rank=1 scaffold_133 . CDS 156122 156778 . + 0 ID=Physo143268;Parent=Physo143268;rank=2 scaffold_133 . exon 156122 156778 . + . ID=Physo143268.2;Parent=Physo143268;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_130 1 160914 scaffold_130 . biological_region 462 465 0.999 + . logic_name=eponine scaffold_130 . biological_region 481 483 0.999 - . logic_name=eponine scaffold_130 . biological_region 534 538 0.999 - . logic_name=eponine scaffold_130 . biological_region 556 557 0.999 - . logic_name=eponine scaffold_130 . repeat_region 2476 6612 . ? . description=dust scaffold_130 . repeat_region 6777 6812 . ? . description=trf scaffold_130 . repeat_region 6817 6847 . ? . description=trf scaffold_130 . repeat_region 7372 7420 . ? . description=trf scaffold_130 . biological_region 9158 9166 0.999 + . logic_name=eponine scaffold_130 . biological_region 9166 9169 0.999 - . logic_name=eponine scaffold_130 . biological_region 9258 9260 0.999 - . logic_name=eponine scaffold_130 . biological_region 9287 9291 0.999 - . logic_name=eponine scaffold_130 . biological_region 9311 9314 0.999 + . logic_name=eponine scaffold_130 . repeat_region 9342 9390 . ? . description=trf scaffold_130 . biological_region 9367 9369 0.999 - . logic_name=eponine scaffold_130 ensembl protein_coding_gene 15400 16019 . + . ID=Physo109540;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1300001;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 15400 16019 . + . ID=Physo109540;Parent=Physo109540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 15400 16019 . + . ID=Physo109540.1;Parent=Physo109540;constitutive=1;ensembl_phase=-1;rank=1 scaffold_130 . CDS 15561 16019 . + 0 ID=Physo109540;Parent=Physo109540;rank=1 scaffold_130 ensembl protein_coding_gene 11681 14471 . + . ID=Physo143124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300001;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 11681 14471 . + . ID=Physo143124;Parent=Physo143124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 11681 12165 . + 0 ID=Physo143124;Parent=Physo143124;rank=1 scaffold_130 . exon 11681 12165 . + . ID=Physo143124.1;Parent=Physo143124;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_130 . CDS 12556 13983 . + 0 ID=Physo143124;Parent=Physo143124;rank=2 scaffold_130 . exon 12556 13983 . + . ID=Physo143124.2;Parent=Physo143124;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_130 . CDS 14086 14409 . + 0 ID=Physo143124;Parent=Physo143124;rank=3 scaffold_130 . exon 14086 14409 . + . ID=Physo143124.3;Parent=Physo143124;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_130 . CDS 14450 14471 . + 0 ID=Physo143124;Parent=Physo143124;rank=4 scaffold_130 . exon 14450 14471 . + . ID=Physo143124.4;Parent=Physo143124;constitutive=1;ensembl_phase=2;rank=4 scaffold_130 ensembl protein_coding_gene 16310 20261 . + . ID=Physo143126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300003;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 16310 20261 . + . ID=Physo143126;Parent=Physo143126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 16310 16858 . + . ID=Physo143126.1;Parent=Physo143126;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_130 . CDS 16399 16858 . + 0 ID=Physo143126;Parent=Physo143126;rank=1 scaffold_130 . CDS 17218 18281 . + 0 ID=Physo143126;Parent=Physo143126;rank=2 scaffold_130 . exon 17218 18281 . + . ID=Physo143126.2;Parent=Physo143126;constitutive=1;ensembl_phase=1;rank=2 scaffold_130 . CDS 18521 19844 . + 0 ID=Physo143126;Parent=Physo143126;rank=3 scaffold_130 . exon 18521 19844 . + . ID=Physo143126.3;Parent=Physo143126;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_130 . CDS 20242 20261 . + 0 ID=Physo143126;Parent=Physo143126;rank=4 scaffold_130 . repeat_region 21755 22273 . ? . description=dust scaffold_130 . biological_region 22863 22865 0.999 - . logic_name=eponine scaffold_130 . repeat_region 24064 25366 . ? . description=dust scaffold_130 . repeat_region 26459 26508 . ? . description=dust scaffold_130 . biological_region 28079 28081 0.999 - . logic_name=eponine scaffold_130 . exon 20242 20261 . + . ID=Physo143126.4;Parent=Physo143126;constitutive=1;ensembl_phase=1;rank=4 scaffold_130 ensembl protein_coding_gene 21513 23917 . + . ID=Physo143127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300004;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 21513 23917 . + . ID=Physo143127;Parent=Physo143127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 21513 21752 . + 0 ID=Physo143127;Parent=Physo143127;rank=1 scaffold_130 . exon 21513 21752 . + . ID=Physo143127.1;Parent=Physo143127;constitutive=1;rank=1 scaffold_130 . CDS 22291 23880 . + 0 ID=Physo143127;Parent=Physo143127;rank=2 scaffold_130 . exon 22291 23880 . + . ID=Physo143127.2;Parent=Physo143127;constitutive=1;rank=2 scaffold_130 . CDS 23903 23917 . + 0 ID=Physo143127;Parent=Physo143127;rank=3 scaffold_130 . exon 23903 23917 . + . ID=Physo143127.3;Parent=Physo143127;constitutive=1;rank=3 scaffold_130 ensembl protein_coding_gene 25869 29786 . + . ID=Physo143128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300005;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 25869 29786 . + . ID=Physo143128;Parent=Physo143128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 25869 26417 . + 0 ID=Physo143128;Parent=Physo143128;rank=1 scaffold_130 . exon 25869 26417 . + . ID=Physo143128.1;Parent=Physo143128;constitutive=1;rank=1 scaffold_130 . CDS 26524 27423 . + 0 ID=Physo143128;Parent=Physo143128;rank=2 scaffold_130 . exon 26524 27423 . + . ID=Physo143128.2;Parent=Physo143128;constitutive=1;rank=2 scaffold_130 . CDS 27450 29786 . + 0 ID=Physo143128;Parent=Physo143128;rank=3 scaffold_130 . exon 27450 29786 . + . ID=Physo143128.3;Parent=Physo143128;constitutive=1;rank=3 scaffold_130 . repeat_region 34772 34810 . ? . description=trf scaffold_130 . repeat_region 34772 34820 . ? . description=trf scaffold_130 ensembl protein_coding_gene 30769 32821 . + . ID=Physo143129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300006;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 30769 32821 . + . ID=Physo143129;Parent=Physo143129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 30769 32147 . + 0 ID=Physo143129;Parent=Physo143129;rank=1 scaffold_130 . exon 30769 32147 . + . ID=Physo143129.1;Parent=Physo143129;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_130 . CDS 32325 32750 . + 0 ID=Physo143129;Parent=Physo143129;rank=2 scaffold_130 . exon 32325 32750 . + . ID=Physo143129.2;Parent=Physo143129;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_130 . CDS 32818 32821 . + 0 ID=Physo143129;Parent=Physo143129;rank=3 scaffold_130 . exon 32818 32821 . + . ID=Physo143129.3;Parent=Physo143129;constitutive=1;ensembl_phase=2;rank=3 scaffold_130 ensembl protein_coding_gene 34820 36757 . + . ID=Physo143130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300007;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 34820 36757 . + . ID=Physo143130;Parent=Physo143130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 34820 35306 . + 0 ID=Physo143130;Parent=Physo143130;rank=1 scaffold_130 . exon 34820 35306 . + . ID=Physo143130.1;Parent=Physo143130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_130 . CDS 35458 36494 . + 0 ID=Physo143130;Parent=Physo143130;rank=2 scaffold_130 . exon 35458 36494 . + . ID=Physo143130.2;Parent=Physo143130;constitutive=1;ensembl_phase=1;rank=2 scaffold_130 . CDS 36566 36757 . + 0 ID=Physo143130;Parent=Physo143130;rank=3 scaffold_130 . exon 36566 36757 . + . ID=Physo143130.3;Parent=Physo143130;constitutive=1;rank=3 scaffold_130 . repeat_region 37869 37918 . ? . description=dust scaffold_130 . biological_region 38459 38459 0.999 - . logic_name=eponine scaffold_130 . repeat_region 39771 39820 . ? . description=dust scaffold_130 . repeat_region 41436 41485 . ? . description=dust scaffold_130 . repeat_region 44748 46499 . ? . description=dust scaffold_130 . repeat_region 47208 47302 . + . description=(TC)n scaffold_130 . repeat_region 47211 47297 . ? . description=dust scaffold_130 ensembl protein_coding_gene 37921 39065 . + . ID=Physo143131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300008;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 37921 39065 . + . ID=Physo143131;Parent=Physo143131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 37921 38163 . + 0 ID=Physo143131;Parent=Physo143131;rank=1 scaffold_130 . exon 37921 38163 . + . ID=Physo143131.1;Parent=Physo143131;constitutive=1;rank=1 scaffold_130 . CDS 38244 39065 . + 0 ID=Physo143131;Parent=Physo143131;rank=2 scaffold_130 . exon 38244 39065 . + . ID=Physo143131.2;Parent=Physo143131;constitutive=1;rank=2 scaffold_130 . repeat_region 48125 48160 . ? . description=trf scaffold_130 . repeat_region 48165 48209 . ? . description=trf scaffold_130 . repeat_region 48249 48301 . ? . description=trf scaffold_130 . repeat_region 48249 48301 . ? . description=trf scaffold_130 . repeat_region 49373 49423 . ? . description=trf scaffold_130 . repeat_region 49421 49507 . ? . description=trf scaffold_130 . repeat_region 53498 53564 . ? . description=trf scaffold_130 . repeat_region 54386 54438 . ? . description=trf scaffold_130 . repeat_region 55061 55111 . ? . description=trf scaffold_130 . repeat_region 55061 55113 . ? . description=trf scaffold_130 . repeat_region 55153 55182 . ? . description=trf scaffold_130 . repeat_region 55188 55225 . ? . description=trf scaffold_130 ensembl protein_coding_gene 47823 48011 . + . ID=Physo123519;biotype=protein_coding;external_name=estExt_Genewise1.C_1300016;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 47823 48011 . + . ID=Physo123519;Parent=Physo123519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 47823 48011 . + . ID=Physo123519.1;Parent=Physo123519;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_130 . CDS 47825 48001 . + 0 ID=Physo123519;Parent=Physo123519;rank=1 scaffold_130 ensembl protein_coding_gene 49984 53786 . - . ID=Physo143132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300009;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 49984 53786 . - . ID=Physo143132;Parent=Physo143132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 49984 50535 . - 0 ID=Physo143132;Parent=Physo143132;rank=4 scaffold_130 . exon 49984 50535 . - . ID=Physo143132.4;Parent=Physo143132;constitutive=1;rank=4 scaffold_130 . CDS 50694 51962 . - 0 ID=Physo143132;Parent=Physo143132;rank=3 scaffold_130 . exon 50694 51962 . - . ID=Physo143132.3;Parent=Physo143132;constitutive=1;rank=3 scaffold_130 . CDS 52138 53406 . - 0 ID=Physo143132;Parent=Physo143132;rank=2 scaffold_130 . exon 52138 53406 . - . ID=Physo143132.2;Parent=Physo143132;constitutive=1;rank=2 scaffold_130 . CDS 53583 53786 . - 0 ID=Physo143132;Parent=Physo143132;rank=1 scaffold_130 . exon 53583 53786 . - . ID=Physo143132.1;Parent=Physo143132;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 55286 58859 . - . ID=Physo143133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300010;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 55286 58859 . - . ID=Physo143133;Parent=Physo143133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 55286 55883 . - 0 ID=Physo143133;Parent=Physo143133;rank=2 scaffold_130 . exon 55286 55883 . - . ID=Physo143133.2;Parent=Physo143133;constitutive=1;ensembl_phase=2;rank=2 scaffold_130 . CDS 55918 58859 . - 0 ID=Physo143133;Parent=Physo143133;rank=1 scaffold_130 . exon 55918 58859 . - . ID=Physo143133.1;Parent=Physo143133;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_130 . biological_region 57804 57804 0.999 - . logic_name=eponine scaffold_130 . repeat_region 59114 60122 . ? . description=dust scaffold_130 . repeat_region 61582 70761 . ? . description=dust scaffold_130 . repeat_region 71321 71363 . ? . description=trf scaffold_130 . repeat_region 71361 71411 . ? . description=trf scaffold_130 ensembl protein_coding_gene 72531 75926 . + . ID=Physo143134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300011;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 72531 75926 . + . ID=Physo143134;Parent=Physo143134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 72531 72602 . + 0 ID=Physo143134;Parent=Physo143134;rank=1 scaffold_130 . exon 72531 72602 . + . ID=Physo143134.1;Parent=Physo143134;constitutive=1;rank=1 scaffold_130 . CDS 72682 73560 . + 0 ID=Physo143134;Parent=Physo143134;rank=2 scaffold_130 . exon 72682 73560 . + . ID=Physo143134.2;Parent=Physo143134;constitutive=1;rank=2 scaffold_130 . CDS 73624 74979 . + 0 ID=Physo143134;Parent=Physo143134;rank=3 scaffold_130 . exon 73624 74979 . + . ID=Physo143134.3;Parent=Physo143134;constitutive=1;rank=3 scaffold_130 . CDS 75507 75926 . + 0 ID=Physo143134;Parent=Physo143134;rank=4 scaffold_130 . exon 75507 75926 . + . ID=Physo143134.4;Parent=Physo143134;constitutive=1;rank=4 scaffold_130 . repeat_region 80889 80900 . ? . description=dust scaffold_130 . biological_region 81109 81109 0.999 + . logic_name=eponine scaffold_130 . biological_region 81424 81431 0.999 + . logic_name=eponine scaffold_130 . biological_region 81478 81481 0.999 - . logic_name=eponine scaffold_130 . biological_region 81536 81540 0.999 + . logic_name=eponine scaffold_130 . biological_region 81565 81566 0.999 + . logic_name=eponine scaffold_130 . biological_region 81660 81660 0.999 + . logic_name=eponine scaffold_130 . biological_region 81691 81697 0.999 - . logic_name=eponine scaffold_130 . biological_region 81817 81818 0.999 + . logic_name=eponine scaffold_130 . biological_region 81862 81865 0.999 + . logic_name=eponine scaffold_130 . biological_region 82234 82236 0.999 + . logic_name=eponine scaffold_130 . biological_region 82363 82370 0.999 + . logic_name=eponine scaffold_130 . biological_region 82626 82626 0.999 - . logic_name=eponine scaffold_130 . biological_region 82797 82800 0.999 - . logic_name=eponine scaffold_130 . biological_region 82856 82859 0.999 + . logic_name=eponine scaffold_130 . biological_region 82913 82915 0.999 - . logic_name=eponine scaffold_130 . biological_region 82968 82970 0.999 + . logic_name=eponine scaffold_130 . biological_region 83010 83012 0.999 + . logic_name=eponine scaffold_130 . biological_region 83043 83046 0.999 - . logic_name=eponine scaffold_130 . biological_region 83124 83128 0.999 + . logic_name=eponine scaffold_130 . biological_region 83230 83235 0.999 - . logic_name=eponine scaffold_130 . biological_region 83284 83287 0.999 - . logic_name=eponine scaffold_130 . biological_region 83290 83291 0.999 + . logic_name=eponine scaffold_130 . biological_region 83307 83311 0.999 - . logic_name=eponine scaffold_130 . biological_region 83556 83557 0.999 + . logic_name=eponine scaffold_130 . biological_region 83872 83876 0.999 + . logic_name=eponine scaffold_130 . biological_region 83900 83902 0.999 - . logic_name=eponine scaffold_130 . biological_region 83936 83941 0.999 + . logic_name=eponine scaffold_130 . biological_region 83956 83958 0.999 + . logic_name=eponine scaffold_130 . biological_region 83984 83990 0.999 - . logic_name=eponine scaffold_130 . biological_region 84003 84008 0.999 + . logic_name=eponine scaffold_130 . biological_region 84072 84073 0.999 + . logic_name=eponine scaffold_130 . biological_region 84076 84078 0.999 - . logic_name=eponine scaffold_130 . biological_region 84088 84090 0.999 - . logic_name=eponine scaffold_130 . biological_region 84095 84100 0.999 - . logic_name=eponine scaffold_130 . biological_region 84102 84104 0.999 + . logic_name=eponine scaffold_130 . biological_region 84113 84119 0.999 - . logic_name=eponine scaffold_130 . biological_region 84155 84160 0.999 - . logic_name=eponine scaffold_130 . biological_region 84215 84224 0.999 - . logic_name=eponine scaffold_130 . biological_region 84257 84260 0.999 - . logic_name=eponine scaffold_130 ensembl protein_coding_gene 82749 85381 . + . ID=Physo158705;biotype=protein_coding;external_name=C_scaffold_130000001;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 82749 85381 . + . ID=Physo158705;Parent=Physo158705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 82749 83616 . + . ID=Physo158705.1;Parent=Physo158705;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_130 . CDS 82751 83616 . + 0 ID=Physo158705;Parent=Physo158705;rank=1 scaffold_130 . CDS 83683 83960 . + 0 ID=Physo158705;Parent=Physo158705;rank=2 scaffold_130 . exon 83683 83960 . + . ID=Physo158705.2;Parent=Physo158705;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_130 . CDS 83981 84279 . + 0 ID=Physo158705;Parent=Physo158705;rank=3 scaffold_130 . exon 83981 84279 . + . ID=Physo158705.3;Parent=Physo158705;constitutive=1;ensembl_phase=1;rank=3 scaffold_130 . CDS 84729 84789 . + 0 ID=Physo158705;Parent=Physo158705;rank=4 scaffold_130 . exon 84729 84789 . + . ID=Physo158705.4;Parent=Physo158705;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_130 . CDS 84862 85045 . + 0 ID=Physo158705;Parent=Physo158705;rank=5 scaffold_130 . exon 84862 85045 . + . ID=Physo158705.5;Parent=Physo158705;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_130 . CDS 85138 85381 . + 0 ID=Physo158705;Parent=Physo158705;rank=6 scaffold_130 . exon 85138 85381 . + . ID=Physo158705.6;Parent=Physo158705;constitutive=1;ensembl_phase=2;rank=6 scaffold_130 ensembl protein_coding_gene 91608 93000 . + . ID=Physo143138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300015;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 91608 93000 . + . ID=Physo143138;Parent=Physo143138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 91608 93000 . + . ID=Physo143138.1;Parent=Physo143138;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_130 . CDS 91632 92789 . + 0 ID=Physo143138;Parent=Physo143138;rank=1 scaffold_130 ensembl protein_coding_gene 85521 87769 . - . ID=Physo158706;biotype=protein_coding;external_name=C_scaffold_130000002;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 85521 87769 . - . ID=Physo158706;Parent=Physo158706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 85521 86763 . - 0 ID=Physo158706;Parent=Physo158706;rank=3 scaffold_130 . exon 85521 86763 . - . ID=Physo158706.3;Parent=Physo158706;constitutive=1;ensembl_phase=2;rank=3 scaffold_130 . CDS 87203 87545 . - 0 ID=Physo158706;Parent=Physo158706;rank=2 scaffold_130 . exon 87203 87545 . - . ID=Physo158706.2;Parent=Physo158706;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_130 . CDS 87616 87769 . - 0 ID=Physo158706;Parent=Physo158706;rank=1 scaffold_130 . exon 87616 87769 . - . ID=Physo158706.1;Parent=Physo158706;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_130 ensembl protein_coding_gene 88202 88741 . + . ID=Physo158707;biotype=protein_coding;external_name=C_scaffold_130000003;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 88202 88741 . + . ID=Physo158707;Parent=Physo158707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 88202 88440 . + 0 ID=Physo158707;Parent=Physo158707;rank=1 scaffold_130 . exon 88202 88440 . + . ID=Physo158707.1;Parent=Physo158707;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_130 . CDS 88555 88741 . + 0 ID=Physo158707;Parent=Physo158707;rank=2 scaffold_130 . exon 88555 88741 . + . ID=Physo158707.2;Parent=Physo158707;constitutive=1;ensembl_phase=2;rank=2 scaffold_130 ensembl protein_coding_gene 93076 97392 . - . ID=Physo158709;biotype=protein_coding;external_name=C_scaffold_130000005;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 93076 97392 . - . ID=Physo158709;Parent=Physo158709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 93076 93183 . - 0 ID=Physo158709;Parent=Physo158709;rank=17 scaffold_130 . exon 93076 93183 . - . ID=Physo158709.17;Parent=Physo158709;constitutive=1;rank=17 scaffold_130 . CDS 93260 93359 . - 0 ID=Physo158709;Parent=Physo158709;rank=16 scaffold_130 . exon 93260 93359 . - . ID=Physo158709.16;Parent=Physo158709;constitutive=1;ensembl_phase=2;rank=16 scaffold_130 . CDS 93431 93501 . - 0 ID=Physo158709;Parent=Physo158709;rank=15 scaffold_130 . exon 93431 93501 . - . ID=Physo158709.15;Parent=Physo158709;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_130 . CDS 93571 94414 . - 0 ID=Physo158709;Parent=Physo158709;rank=14 scaffold_130 . exon 93571 94414 . - . ID=Physo158709.14;Parent=Physo158709;constitutive=1;ensembl_phase=2;rank=14 scaffold_130 . CDS 95026 95150 . - 0 ID=Physo158709;Parent=Physo158709;rank=13 scaffold_130 . CDS 95208 95264 . - 0 ID=Physo158709;Parent=Physo158709;rank=12 scaffold_130 . CDS 95343 95385 . - 0 ID=Physo158709;Parent=Physo158709;rank=11 scaffold_130 . CDS 95465 95610 . - 0 ID=Physo158709;Parent=Physo158709;rank=10 scaffold_130 . CDS 95683 95746 . - 0 ID=Physo158709;Parent=Physo158709;rank=9 scaffold_130 . CDS 95818 95917 . - 0 ID=Physo158709;Parent=Physo158709;rank=8 scaffold_130 . CDS 95992 96064 . - 0 ID=Physo158709;Parent=Physo158709;rank=7 scaffold_130 . CDS 96135 96180 . - 0 ID=Physo158709;Parent=Physo158709;rank=6 scaffold_130 . CDS 96243 96435 . - 0 ID=Physo158709;Parent=Physo158709;rank=5 scaffold_130 . CDS 96504 96703 . - 0 ID=Physo158709;Parent=Physo158709;rank=4 scaffold_130 . CDS 96767 96963 . - 0 ID=Physo158709;Parent=Physo158709;rank=3 scaffold_130 . CDS 97041 97124 . - 0 ID=Physo158709;Parent=Physo158709;rank=2 scaffold_130 . CDS 97228 97392 . - 0 ID=Physo158709;Parent=Physo158709;rank=1 scaffold_130 . biological_region 96505 96506 0.999 + . logic_name=eponine scaffold_130 . repeat_region 97147 97170 . ? . description=dust scaffold_130 . repeat_region 97147 97170 . ? . description=trf scaffold_130 . biological_region 97365 97369 0.999 - . logic_name=eponine scaffold_130 . biological_region 97394 97395 0.999 - . logic_name=eponine scaffold_130 . repeat_region 102924 102933 . ? . description=dust scaffold_130 . biological_region 103320 103323 0.999 - . logic_name=eponine scaffold_130 . biological_region 103399 103403 0.999 - . logic_name=eponine scaffold_130 . repeat_region 104011 104193 . + . description=GypsyPi-1c_LTR scaffold_130 ensembl protein_coding_gene 102117 103477 . + . ID=Physo143140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300017;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 102117 103477 . + . ID=Physo143140;Parent=Physo143140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 102117 102167 . + 0 ID=Physo143140;Parent=Physo143140;rank=1 scaffold_130 . exon 102117 102167 . + . ID=Physo143140.1;Parent=Physo143140;constitutive=1;rank=1 scaffold_130 . CDS 102234 102425 . + 0 ID=Physo143140;Parent=Physo143140;rank=2 scaffold_130 . exon 102234 102425 . + . ID=Physo143140.2;Parent=Physo143140;constitutive=1;rank=2 scaffold_130 . CDS 102500 102655 . + 0 ID=Physo143140;Parent=Physo143140;rank=3 scaffold_130 . exon 102500 102655 . + . ID=Physo143140.3;Parent=Physo143140;constitutive=1;rank=3 scaffold_130 . CDS 102738 102905 . + 0 ID=Physo143140;Parent=Physo143140;rank=4 scaffold_130 . exon 102738 102905 . + . ID=Physo143140.4;Parent=Physo143140;constitutive=1;rank=4 scaffold_130 . CDS 103055 103477 . + 0 ID=Physo143140;Parent=Physo143140;rank=5 scaffold_130 . exon 103055 103477 . + . ID=Physo143140.5;Parent=Physo143140;constitutive=1;rank=5 scaffold_130 . exon 95026 95150 . - . ID=Physo158709.13;Parent=Physo158709;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_130 . exon 95208 95264 . - . ID=Physo158709.12;Parent=Physo158709;constitutive=1;rank=12 scaffold_130 . exon 95343 95385 . - . ID=Physo158709.11;Parent=Physo158709;constitutive=1;ensembl_phase=2;rank=11 scaffold_130 . exon 95465 95610 . - . ID=Physo158709.10;Parent=Physo158709;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_130 . exon 95683 95746 . - . ID=Physo158709.9;Parent=Physo158709;constitutive=1;ensembl_phase=2;rank=9 scaffold_130 . exon 95818 95917 . - . ID=Physo158709.8;Parent=Physo158709;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_130 . exon 95992 96064 . - . ID=Physo158709.7;Parent=Physo158709;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_130 . exon 96135 96180 . - . ID=Physo158709.6;Parent=Physo158709;constitutive=1;ensembl_phase=2;rank=6 scaffold_130 . exon 96243 96435 . - . ID=Physo158709.5;Parent=Physo158709;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_130 . exon 96504 96703 . - . ID=Physo158709.4;Parent=Physo158709;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_130 . exon 96767 96963 . - . ID=Physo158709.3;Parent=Physo158709;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_130 . exon 97041 97124 . - . ID=Physo158709.2;Parent=Physo158709;constitutive=1;rank=2 scaffold_130 . exon 97228 97392 . - . ID=Physo158709.1;Parent=Physo158709;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 97529 97952 . + . ID=Physo158710;biotype=protein_coding;external_name=C_scaffold_130000006;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 97529 97952 . + . ID=Physo158710;Parent=Physo158710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 97529 97555 . + 0 ID=Physo158710;Parent=Physo158710;rank=1 scaffold_130 . exon 97529 97555 . + . ID=Physo158710.1;Parent=Physo158710;constitutive=1;rank=1 scaffold_130 . CDS 97606 97719 . + 0 ID=Physo158710;Parent=Physo158710;rank=2 scaffold_130 . exon 97606 97719 . + . ID=Physo158710.2;Parent=Physo158710;constitutive=1;rank=2 scaffold_130 . CDS 97797 97952 . + 0 ID=Physo158710;Parent=Physo158710;rank=3 scaffold_130 . exon 97797 97952 . + . ID=Physo158710.3;Parent=Physo158710;constitutive=1;rank=3 scaffold_130 . repeat_region 104198 107279 . + . description=GypsyPi-1c_I-int scaffold_130 . repeat_region 107284 110782 . + . description=GypsyPi-1c_I-int scaffold_130 . repeat_region 111353 111675 . + . description=GypsyPi-1c_I-int scaffold_130 ensembl protein_coding_gene 104346 108947 . + . ID=Physo143141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300018;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 104346 108947 . + . ID=Physo143141;Parent=Physo143141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 104346 104994 . + 0 ID=Physo143141;Parent=Physo143141;rank=1 scaffold_130 . exon 104346 104994 . + . ID=Physo143141.1;Parent=Physo143141;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_130 . CDS 105263 106138 . + 0 ID=Physo143141;Parent=Physo143141;rank=2 scaffold_130 . exon 105263 106138 . + . ID=Physo143141.2;Parent=Physo143141;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_130 . CDS 106175 106622 . + 0 ID=Physo143141;Parent=Physo143141;rank=3 scaffold_130 . exon 106175 106622 . + . ID=Physo143141.3;Parent=Physo143141;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_130 . CDS 106809 107376 . + 0 ID=Physo143141;Parent=Physo143141;rank=4 scaffold_130 . exon 106809 107376 . + . ID=Physo143141.4;Parent=Physo143141;constitutive=1;ensembl_phase=2;rank=4 scaffold_130 . CDS 107584 107739 . + 0 ID=Physo143141;Parent=Physo143141;rank=5 scaffold_130 . exon 107584 107739 . + . ID=Physo143141.5;Parent=Physo143141;constitutive=1;rank=5 scaffold_130 . CDS 107812 108558 . + 0 ID=Physo143141;Parent=Physo143141;rank=6 scaffold_130 . exon 107812 108558 . + . ID=Physo143141.6;Parent=Physo143141;constitutive=1;rank=6 scaffold_130 . CDS 108678 108947 . + 0 ID=Physo143141;Parent=Physo143141;rank=7 scaffold_130 . exon 108678 108947 . + . ID=Physo143141.7;Parent=Physo143141;constitutive=1;rank=7 scaffold_130 ensembl protein_coding_gene 109281 111489 . - . ID=Physo143142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300019;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 109281 111489 . - . ID=Physo143142;Parent=Physo143142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 109281 109621 . - 0 ID=Physo143142;Parent=Physo143142;rank=3 scaffold_130 . exon 109281 109621 . - . ID=Physo143142.3;Parent=Physo143142;constitutive=1;ensembl_phase=1;rank=3 scaffold_130 . CDS 109648 111132 . - 0 ID=Physo143142;Parent=Physo143142;rank=2 scaffold_130 . exon 109648 111132 . - . ID=Physo143142.2;Parent=Physo143142;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_130 . CDS 111192 111489 . - 0 ID=Physo143142;Parent=Physo143142;rank=1 scaffold_130 . exon 111192 111489 . - . ID=Physo143142.1;Parent=Physo143142;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_130 . biological_region 114051 114051 0.999 - . logic_name=eponine scaffold_130 . repeat_region 114377 114474 . ? . description=trf scaffold_130 . repeat_region 114440 114494 . ? . description=trf scaffold_130 . repeat_region 114474 114529 . ? . description=trf scaffold_130 . repeat_region 115466 115480 . ? . description=dust scaffold_130 . biological_region 119003 119003 0.999 + . logic_name=eponine scaffold_130 . biological_region 119134 119134 0.999 - . logic_name=eponine scaffold_130 . biological_region 119154 119155 0.999 - . logic_name=eponine scaffold_130 . biological_region 121163 121171 0.999 - . logic_name=eponine scaffold_130 . biological_region 121206 121207 0.999 - . logic_name=eponine scaffold_130 . biological_region 121219 121223 0.999 + . logic_name=eponine scaffold_130 ensembl protein_coding_gene 122455 123540 . - . ID=Physo123541;biotype=protein_coding;external_name=estExt_Genewise1.C_1300038;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 122455 123540 . - . ID=Physo123541;Parent=Physo123541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 122455 122559 . - 0 ID=Physo123541;Parent=Physo123541;rank=5 scaffold_130 . exon 122455 122559 . - . ID=Physo123541.5;Parent=Physo123541;constitutive=1;rank=5 scaffold_130 . CDS 122631 122855 . - 0 ID=Physo123541;Parent=Physo123541;rank=4 scaffold_130 . exon 122631 122855 . - . ID=Physo123541.4;Parent=Physo123541;constitutive=1;rank=4 scaffold_130 . CDS 122928 123005 . - 0 ID=Physo123541;Parent=Physo123541;rank=3 scaffold_130 . exon 122928 123005 . - . ID=Physo123541.3;Parent=Physo123541;constitutive=1;rank=3 scaffold_130 . CDS 123069 123168 . - 0 ID=Physo123541;Parent=Physo123541;rank=2 scaffold_130 . CDS 123235 123485 . - 0 ID=Physo123541;Parent=Physo123541;rank=1 scaffold_130 ensembl protein_coding_gene 115684 118633 . + . ID=Physo143143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300020;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 115684 118633 . + . ID=Physo143143;Parent=Physo143143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 115684 116191 . + . ID=Physo143143.1;Parent=Physo143143;constitutive=1;ensembl_phase=-1;rank=1 scaffold_130 . CDS 115691 116191 . + 0 ID=Physo143143;Parent=Physo143143;rank=1 scaffold_130 . CDS 116268 116344 . + 0 ID=Physo143143;Parent=Physo143143;rank=2 scaffold_130 . exon 116268 116344 . + . ID=Physo143143.2;Parent=Physo143143;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_130 . CDS 116440 116519 . + 0 ID=Physo143143;Parent=Physo143143;rank=3 scaffold_130 . exon 116440 116519 . + . ID=Physo143143.3;Parent=Physo143143;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_130 . CDS 116584 116620 . + 0 ID=Physo143143;Parent=Physo143143;rank=4 scaffold_130 . exon 116584 116620 . + . ID=Physo143143.4;Parent=Physo143143;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_130 . CDS 116646 116702 . + 0 ID=Physo143143;Parent=Physo143143;rank=5 scaffold_130 . exon 116646 116702 . + . ID=Physo143143.5;Parent=Physo143143;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_130 . CDS 116766 116900 . + 0 ID=Physo143143;Parent=Physo143143;rank=6 scaffold_130 . exon 116766 116900 . + . ID=Physo143143.6;Parent=Physo143143;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_130 . CDS 116971 117025 . + 0 ID=Physo143143;Parent=Physo143143;rank=7 scaffold_130 . exon 116971 117025 . + . ID=Physo143143.7;Parent=Physo143143;constitutive=1;ensembl_phase=2;rank=7 scaffold_130 . CDS 117101 117467 . + 0 ID=Physo143143;Parent=Physo143143;rank=8 scaffold_130 . exon 117101 117467 . + . ID=Physo143143.8;Parent=Physo143143;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_130 . CDS 117532 117638 . + 0 ID=Physo143143;Parent=Physo143143;rank=9 scaffold_130 . exon 117532 117638 . + . ID=Physo143143.9;Parent=Physo143143;constitutive=1;ensembl_phase=1;rank=9 scaffold_130 . CDS 117709 117876 . + 0 ID=Physo143143;Parent=Physo143143;rank=10 scaffold_130 . exon 117709 117876 . + . ID=Physo143143.10;Parent=Physo143143;constitutive=1;rank=10 scaffold_130 . CDS 117951 118226 . + 0 ID=Physo143143;Parent=Physo143143;rank=11 scaffold_130 . exon 117951 118226 . + . ID=Physo143143.11;Parent=Physo143143;constitutive=1;rank=11 scaffold_130 . CDS 118304 118633 . + 0 ID=Physo143143;Parent=Physo143143;rank=12 scaffold_130 . exon 118304 118633 . + . ID=Physo143143.12;Parent=Physo143143;constitutive=1;rank=12 scaffold_130 ensembl protein_coding_gene 118934 119887 . + . ID=Physo143144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300021;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 118934 119887 . + . ID=Physo143144;Parent=Physo143144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 118934 119698 . + 0 ID=Physo143144;Parent=Physo143144;rank=1 scaffold_130 . exon 118934 119887 . + . ID=Physo143144.1;Parent=Physo143144;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_130 ensembl protein_coding_gene 119923 120647 . - . ID=Physo143145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300022;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 119923 120647 . - . ID=Physo143145;Parent=Physo143145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 119923 120201 . - 0 ID=Physo143145;Parent=Physo143145;rank=2 scaffold_130 . exon 119923 120201 . - . ID=Physo143145.2;Parent=Physo143145;constitutive=1;rank=2 scaffold_130 . CDS 120285 120587 . - 0 ID=Physo143145;Parent=Physo143145;rank=1 scaffold_130 . exon 120285 120647 . - . ID=Physo143145.1;Parent=Physo143145;constitutive=1;ensembl_phase=-1;rank=1 scaffold_130 ensembl protein_coding_gene 120767 122255 . + . ID=Physo143146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300023;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 120767 122255 . + . ID=Physo143146;Parent=Physo143146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 120767 120925 . + 0 ID=Physo143146;Parent=Physo143146;rank=1 scaffold_130 . exon 120767 120925 . + . ID=Physo143146.1;Parent=Physo143146;constitutive=1;rank=1 scaffold_130 . CDS 120994 121530 . + 0 ID=Physo143146;Parent=Physo143146;rank=2 scaffold_130 . exon 120994 121530 . + . ID=Physo143146.2;Parent=Physo143146;constitutive=1;rank=2 scaffold_130 . CDS 121614 122255 . + 0 ID=Physo143146;Parent=Physo143146;rank=3 scaffold_130 . exon 121614 122255 . + . ID=Physo143146.3;Parent=Physo143146;constitutive=1;rank=3 scaffold_130 . repeat_region 127915 128221 . - . description=GypsyPi-1c_LTR scaffold_130 . repeat_region 129739 129816 . - . description=GypsyPi-1c_I-int scaffold_130 . repeat_region 130644 130911 . - . description=GypsyPi-1c_I-int scaffold_130 . repeat_region 131088 131235 . - . description=GypsyPi-1c_I-int scaffold_130 . repeat_region 131249 131552 . - . description=GypsyPi-1c_LTR scaffold_130 . repeat_region 131553 131875 . - . description=GypsyPi-1c_I-int scaffold_130 . repeat_region 132444 132537 . - . description=GypsyPi-1c_I-int scaffold_130 . exon 123069 123168 . - . ID=Physo123541.2;Parent=Physo123541;constitutive=1;ensembl_phase=2;rank=2 scaffold_130 . exon 123235 123540 . - . ID=Physo123541.1;Parent=Physo123541;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_130 ensembl protein_coding_gene 123618 125795 . + . ID=Physo123547;biotype=protein_coding;external_name=estExt_Genewise1.C_1300044;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 123618 125795 . + . ID=Physo123547;Parent=Physo123547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 123618 123731 . + . ID=Physo123547.1;Parent=Physo123547;constitutive=1;ensembl_phase=-1;rank=1 scaffold_130 . CDS 123651 123731 . + 0 ID=Physo123547;Parent=Physo123547;rank=1 scaffold_130 . CDS 123817 124065 . + 0 ID=Physo123547;Parent=Physo123547;rank=2 scaffold_130 . exon 123817 124065 . + . ID=Physo123547.2;Parent=Physo123547;constitutive=1;rank=2 scaffold_130 . CDS 124137 125507 . + 0 ID=Physo123547;Parent=Physo123547;rank=3 scaffold_130 . exon 124137 125507 . + . ID=Physo123547.3;Parent=Physo123547;constitutive=1;rank=3 scaffold_130 . CDS 125580 125654 . + 0 ID=Physo123547;Parent=Physo123547;rank=4 scaffold_130 . exon 125580 125654 . + . ID=Physo123547.4;Parent=Physo123547;constitutive=1;rank=4 scaffold_130 . CDS 125724 125795 . + 0 ID=Physo123547;Parent=Physo123547;rank=5 scaffold_130 . exon 125724 125795 . + . ID=Physo123547.5;Parent=Physo123547;constitutive=1;rank=5 scaffold_130 ensembl protein_coding_gene 126818 127414 . - . ID=Physo143149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300026;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 126818 127414 . - . ID=Physo143149;Parent=Physo143149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 126818 127414 . - 0 ID=Physo143149;Parent=Physo143149;rank=1 scaffold_130 . exon 126818 127414 . - . ID=Physo143149.1;Parent=Physo143149;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 131739 132680 . + . ID=Physo143150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300027;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 131739 132680 . + . ID=Physo143150;Parent=Physo143150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 131739 132680 . + 0 ID=Physo143150;Parent=Physo143150;rank=1 scaffold_130 . exon 131739 132680 . + . ID=Physo143150.1;Parent=Physo143150;constitutive=1;rank=1 scaffold_130 . repeat_region 132701 132708 . ? . description=dust scaffold_130 . repeat_region 133283 133290 . ? . description=dust scaffold_130 . biological_region 136639 136642 0.999 - . logic_name=eponine scaffold_130 . repeat_region 136949 136956 . ? . description=dust scaffold_130 . biological_region 140457 140461 0.999 + . logic_name=eponine scaffold_130 . biological_region 140483 140486 0.999 + . logic_name=eponine scaffold_130 . biological_region 140526 140530 0.999 + . logic_name=eponine scaffold_130 . biological_region 140601 140609 0.999 + . logic_name=eponine scaffold_130 ensembl protein_coding_gene 137670 138857 . + . ID=Physo143151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300028;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 137670 138857 . + . ID=Physo143151;Parent=Physo143151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 137670 138857 . + 0 ID=Physo143151;Parent=Physo143151;rank=1 scaffold_130 . exon 137670 138857 . + . ID=Physo143151.1;Parent=Physo143151;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 138907 140120 . - . ID=Physo143152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300029;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 138907 140120 . - . ID=Physo143152;Parent=Physo143152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 138907 139180 . - . ID=Physo143152.3;Parent=Physo143152;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_130 . CDS 139021 139180 . - 0 ID=Physo143152;Parent=Physo143152;rank=3 scaffold_130 . CDS 139256 139857 . - 0 ID=Physo143152;Parent=Physo143152;rank=2 scaffold_130 . exon 139256 139857 . - . ID=Physo143152.2;Parent=Physo143152;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_130 . CDS 139950 140075 . - 0 ID=Physo143152;Parent=Physo143152;rank=1 scaffold_130 . exon 139950 140120 . - . ID=Physo143152.1;Parent=Physo143152;constitutive=1;ensembl_phase=-1;rank=1 scaffold_130 ensembl protein_coding_gene 140441 142020 . + . ID=Physo143153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300030;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 140441 142020 . + . ID=Physo143153;Parent=Physo143153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 140441 140733 . + . ID=Physo143153.1;Parent=Physo143153;constitutive=1;ensembl_phase=-1;rank=1 scaffold_130 . CDS 140458 140733 . + 0 ID=Physo143153;Parent=Physo143153;rank=1 scaffold_130 . CDS 140810 140862 . + 0 ID=Physo143153;Parent=Physo143153;rank=2 scaffold_130 . exon 140810 140862 . + . ID=Physo143153.2;Parent=Physo143153;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_130 . CDS 140927 141123 . + 0 ID=Physo143153;Parent=Physo143153;rank=3 scaffold_130 . exon 140927 141123 . + . ID=Physo143153.3;Parent=Physo143153;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_130 . CDS 141208 141947 . + 0 ID=Physo143153;Parent=Physo143153;rank=4 scaffold_130 . exon 141208 142020 . + . ID=Physo143153.4;Parent=Physo143153;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_130 . repeat_region 143044 143350 . - . description=GypsyPi-1c_LTR scaffold_130 . repeat_region 144867 144944 . - . description=GypsyPi-1c_I-int scaffold_130 . repeat_region 145806 147944 . - . description=GypsyPi-1c_I-int scaffold_130 . repeat_region 145817 145992 . ? . description=trf scaffold_130 . repeat_region 146484 146533 . ? . description=trf scaffold_130 . repeat_region 147945 148251 . - . description=GypsyPi-1c_LTR scaffold_130 . repeat_region 148486 148532 . ? . description=trf scaffold_130 ensembl protein_coding_gene 146895 147857 . - . ID=Physo143154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300031;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 146895 147857 . - . ID=Physo143154;Parent=Physo143154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 146895 147107 . - 0 ID=Physo143154;Parent=Physo143154;rank=3 scaffold_130 . exon 146895 147107 . - . ID=Physo143154.3;Parent=Physo143154;constitutive=1;rank=3 scaffold_130 . CDS 147227 147421 . - 0 ID=Physo143154;Parent=Physo143154;rank=2 scaffold_130 . exon 147227 147421 . - . ID=Physo143154.2;Parent=Physo143154;constitutive=1;rank=2 scaffold_130 . CDS 147471 147857 . - 0 ID=Physo143154;Parent=Physo143154;rank=1 scaffold_130 . exon 147471 147857 . - . ID=Physo143154.1;Parent=Physo143154;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 148580 150726 . + . ID=Physo143155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300032;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 148580 150726 . + . ID=Physo143155;Parent=Physo143155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 148580 148610 . + 0 ID=Physo143155;Parent=Physo143155;rank=1 scaffold_130 . exon 148580 148610 . + . ID=Physo143155.1;Parent=Physo143155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_130 . CDS 148677 149279 . + 0 ID=Physo143155;Parent=Physo143155;rank=2 scaffold_130 . exon 148677 149279 . + . ID=Physo143155.2;Parent=Physo143155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_130 . CDS 149561 150019 . + 0 ID=Physo143155;Parent=Physo143155;rank=3 scaffold_130 . exon 149561 150019 . + . ID=Physo143155.3;Parent=Physo143155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_130 . CDS 150152 150535 . + 0 ID=Physo143155;Parent=Physo143155;rank=4 scaffold_130 . exon 150152 150535 . + . ID=Physo143155.4;Parent=Physo143155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_130 . CDS 150608 150726 . + 0 ID=Physo143155;Parent=Physo143155;rank=5 scaffold_130 . exon 150608 150726 . + . ID=Physo143155.5;Parent=Physo143155;constitutive=1;ensembl_phase=1;rank=5 scaffold_130 ensembl protein_coding_gene 150932 152762 . + . ID=Physo143156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300033;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 150932 152762 . + . ID=Physo143156;Parent=Physo143156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . exon 150932 151647 . + . ID=Physo143156.1;Parent=Physo143156;constitutive=1;ensembl_phase=-1;rank=1 scaffold_130 . CDS 151000 151647 . + 0 ID=Physo143156;Parent=Physo143156;rank=1 scaffold_130 . CDS 151722 152417 . + 0 ID=Physo143156;Parent=Physo143156;rank=2 scaffold_130 . biological_region 152082 152086 0.999 - . logic_name=eponine scaffold_130 . biological_region 153876 153881 0.999 + . logic_name=eponine scaffold_130 . biological_region 154328 154332 0.999 + . logic_name=eponine scaffold_130 . exon 151722 152762 . + . ID=Physo143156.2;Parent=Physo143156;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_130 ensembl protein_coding_gene 152943 154574 . + . ID=Physo143157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300034;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 152943 154574 . + . ID=Physo143157;Parent=Physo143157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 152943 154574 . + 0 ID=Physo143157;Parent=Physo143157;rank=1 scaffold_130 . exon 152943 154574 . + . ID=Physo143157.1;Parent=Physo143157;constitutive=1;rank=1 scaffold_130 ensembl protein_coding_gene 157964 158477 . - . ID=Physo143158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1300035;logic_name=jgi_physo1_1 scaffold_130 ensembl transcript 157964 158477 . - . ID=Physo143158;Parent=Physo143158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_130 . CDS 157964 158175 . - 0 ID=Physo143158;Parent=Physo143158;rank=2 scaffold_130 . exon 157964 158175 . - . ID=Physo143158.2;Parent=Physo143158;constitutive=1;ensembl_phase=1;rank=2 scaffold_130 . CDS 158270 158477 . - 0 ID=Physo143158;Parent=Physo143158;rank=1 scaffold_130 . exon 158270 158477 . - . ID=Physo143158.1;Parent=Physo143158;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_132 1 161044 scaffold_132 . repeat_region 4534 4656 . ? . description=dust scaffold_132 . repeat_region 4659 5386 . - . description=GypsyPi-1c_I-int scaffold_132 . biological_region 4883 4884 0.999 - . logic_name=eponine scaffold_132 . repeat_region 5387 5690 . - . description=GypsyPi-1c_LTR scaffold_132 . repeat_region 5883 5893 . ? . description=dust scaffold_132 . biological_region 8280 8282 0.999 - . logic_name=eponine scaffold_132 ensembl protein_coding_gene 7075 9518 . - . ID=Physo143205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320001;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 7075 9518 . - . ID=Physo143205;Parent=Physo143205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 7075 8226 . - 0 ID=Physo143205;Parent=Physo143205;rank=4 scaffold_132 . exon 7075 8226 . - . ID=Physo143205.4;Parent=Physo143205;constitutive=1;rank=4 scaffold_132 . CDS 8360 9152 . - 0 ID=Physo143205;Parent=Physo143205;rank=3 scaffold_132 . exon 8360 9152 . - . ID=Physo143205.3;Parent=Physo143205;constitutive=1;ensembl_phase=2;rank=3 scaffold_132 . CDS 9215 9360 . - 0 ID=Physo143205;Parent=Physo143205;rank=2 scaffold_132 . exon 9215 9360 . - . ID=Physo143205.2;Parent=Physo143205;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_132 . CDS 9465 9518 . - 0 ID=Physo143205;Parent=Physo143205;rank=1 scaffold_132 . exon 9465 9518 . - . ID=Physo143205.1;Parent=Physo143205;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 14857 16472 . - . ID=Physo143206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320002;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 14857 16472 . - . ID=Physo143206;Parent=Physo143206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 14857 14876 . - 0 ID=Physo143206;Parent=Physo143206;rank=4 scaffold_132 . exon 14857 14876 . - . ID=Physo143206.4;Parent=Physo143206;constitutive=1;ensembl_phase=1;rank=4 scaffold_132 . CDS 14921 15310 . - 0 ID=Physo143206;Parent=Physo143206;rank=3 scaffold_132 . exon 14921 15310 . - . ID=Physo143206.3;Parent=Physo143206;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_132 . CDS 15371 15396 . - 0 ID=Physo143206;Parent=Physo143206;rank=2 scaffold_132 . exon 15371 15396 . - . ID=Physo143206.2;Parent=Physo143206;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_132 . CDS 15793 16472 . - 0 ID=Physo143206;Parent=Physo143206;rank=1 scaffold_132 . exon 15793 16472 . - . ID=Physo143206.1;Parent=Physo143206;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 ensembl protein_coding_gene 17382 23604 . - . ID=Physo143207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320003;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 17382 23604 . - . ID=Physo143207;Parent=Physo143207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 17382 17706 . - 0 ID=Physo143207;Parent=Physo143207;rank=8 scaffold_132 . exon 17382 17706 . - . ID=Physo143207.8;Parent=Physo143207;constitutive=1;ensembl_phase=2;rank=8 scaffold_132 . CDS 17727 17872 . - 0 ID=Physo143207;Parent=Physo143207;rank=7 scaffold_132 . exon 17727 17872 . - . ID=Physo143207.7;Parent=Physo143207;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_132 . CDS 17918 18980 . - 0 ID=Physo143207;Parent=Physo143207;rank=6 scaffold_132 . exon 17918 18980 . - . ID=Physo143207.6;Parent=Physo143207;constitutive=1;ensembl_phase=2;rank=6 scaffold_132 . CDS 19429 20015 . - 0 ID=Physo143207;Parent=Physo143207;rank=5 scaffold_132 . CDS 20037 21158 . - 0 ID=Physo143207;Parent=Physo143207;rank=4 scaffold_132 . CDS 21178 21952 . - 0 ID=Physo143207;Parent=Physo143207;rank=3 scaffold_132 . CDS 21996 22463 . - 0 ID=Physo143207;Parent=Physo143207;rank=2 scaffold_132 . CDS 22577 23604 . - 0 ID=Physo143207;Parent=Physo143207;rank=1 scaffold_132 . repeat_region 18861 21158 . - . description=GypsyPi-1c_I-int scaffold_132 . biological_region 21725 21728 0.999 - . logic_name=eponine scaffold_132 . biological_region 21760 21763 0.999 + . logic_name=eponine scaffold_132 . biological_region 22347 22353 0.999 - . logic_name=eponine scaffold_132 . biological_region 22360 22362 0.999 + . logic_name=eponine scaffold_132 . biological_region 22680 22685 0.999 + . logic_name=eponine scaffold_132 . biological_region 23264 23266 0.999 + . logic_name=eponine scaffold_132 . repeat_region 24029 24036 . ? . description=dust scaffold_132 . biological_region 25896 25896 0.999 - . logic_name=eponine scaffold_132 . repeat_region 26797 26805 . ? . description=dust scaffold_132 . repeat_region 27998 28089 . ? . description=dust scaffold_132 . repeat_region 27998 28089 . ? . description=trf scaffold_132 . repeat_region 27998 28089 . + . description=(GA)n scaffold_132 . exon 19429 20015 . - . ID=Physo143207.5;Parent=Physo143207;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_132 . exon 20037 21158 . - . ID=Physo143207.4;Parent=Physo143207;constitutive=1;rank=4 scaffold_132 . exon 21178 21952 . - . ID=Physo143207.3;Parent=Physo143207;constitutive=1;ensembl_phase=2;rank=3 scaffold_132 . exon 21996 22463 . - . ID=Physo143207.2;Parent=Physo143207;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_132 . exon 22577 23604 . - . ID=Physo143207.1;Parent=Physo143207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 ensembl protein_coding_gene 27244 27995 . + . ID=Physo143208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320004;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 27244 27995 . + . ID=Physo143208;Parent=Physo143208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 27244 27511 . + 0 ID=Physo143208;Parent=Physo143208;rank=1 scaffold_132 . exon 27244 27511 . + . ID=Physo143208.1;Parent=Physo143208;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 . CDS 27643 27995 . + 0 ID=Physo143208;Parent=Physo143208;rank=2 scaffold_132 . exon 27643 27995 . + . ID=Physo143208.2;Parent=Physo143208;constitutive=1;ensembl_phase=1;rank=2 scaffold_132 ensembl protein_coding_gene 29808 33869 . - . ID=Physo158721;biotype=protein_coding;external_name=C_scaffold_132000001;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 29808 33869 . - . ID=Physo158721;Parent=Physo158721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 29808 31368 . - 0 ID=Physo158721;Parent=Physo158721;rank=7 scaffold_132 . exon 29808 31368 . - . ID=Physo158721.7;Parent=Physo158721;constitutive=1;ensembl_phase=2;rank=7 scaffold_132 . CDS 31564 31821 . - 0 ID=Physo158721;Parent=Physo158721;rank=6 scaffold_132 . exon 31564 31821 . - . ID=Physo158721.6;Parent=Physo158721;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_132 . CDS 31903 32015 . - 0 ID=Physo158721;Parent=Physo158721;rank=5 scaffold_132 . exon 31903 32015 . - . ID=Physo158721.5;Parent=Physo158721;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_132 . CDS 32181 32390 . - 0 ID=Physo158721;Parent=Physo158721;rank=4 scaffold_132 . exon 32181 32390 . - . ID=Physo158721.4;Parent=Physo158721;constitutive=1;rank=4 scaffold_132 . CDS 32439 32605 . - 0 ID=Physo158721;Parent=Physo158721;rank=3 scaffold_132 . exon 32439 32605 . - . ID=Physo158721.3;Parent=Physo158721;constitutive=1;ensembl_phase=1;rank=3 scaffold_132 . CDS 33008 33161 . - 0 ID=Physo158721;Parent=Physo158721;rank=2 scaffold_132 . exon 33008 33161 . - . ID=Physo158721.2;Parent=Physo158721;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_132 . CDS 33186 33869 . - 0 ID=Physo158721;Parent=Physo158721;rank=1 scaffold_132 . exon 33186 33869 . - . ID=Physo158721.1;Parent=Physo158721;constitutive=1;rank=1 scaffold_132 . repeat_region 38849 38862 . ? . description=dust scaffold_132 . biological_region 40594 40597 0.999 - . logic_name=eponine scaffold_132 . repeat_region 41904 42023 . ? . description=dust scaffold_132 . repeat_region 42080 42103 . ? . description=trf scaffold_132 . repeat_region 42080 42114 . ? . description=dust scaffold_132 . biological_region 46775 46779 0.999 + . logic_name=eponine scaffold_132 ensembl protein_coding_gene 46703 47011 . + . ID=Physo143210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320006;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 46703 47011 . + . ID=Physo143210;Parent=Physo143210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 46703 47011 . + 0 ID=Physo143210;Parent=Physo143210;rank=1 scaffold_132 . exon 46703 47011 . + . ID=Physo143210.1;Parent=Physo143210;constitutive=1;rank=1 scaffold_132 . repeat_region 47676 48223 . + . description=GypsyPi-1c_I-int scaffold_132 . repeat_region 48868 51184 . + . description=GypsyPi-1c_I-int scaffold_132 . repeat_region 51699 52216 . + . description=GypsyPi-1c_I-int scaffold_132 . repeat_region 52718 52849 . + . description=GypsyPi-1c_I-int scaffold_132 ensembl protein_coding_gene 47860 51190 . + . ID=Physo143211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320007;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 47860 51190 . + . ID=Physo143211;Parent=Physo143211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 47860 49748 . + 0 ID=Physo143211;Parent=Physo143211;rank=1 scaffold_132 . exon 47860 49748 . + . ID=Physo143211.1;Parent=Physo143211;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 . CDS 50192 50720 . + 0 ID=Physo143211;Parent=Physo143211;rank=2 scaffold_132 . exon 50192 50720 . + . ID=Physo143211.2;Parent=Physo143211;constitutive=1;ensembl_phase=2;rank=2 scaffold_132 . CDS 50861 51190 . + 0 ID=Physo143211;Parent=Physo143211;rank=3 scaffold_132 . exon 50861 51190 . + . ID=Physo143211.3;Parent=Physo143211;constitutive=1;rank=3 scaffold_132 ensembl protein_coding_gene 52197 54019 . - . ID=Physo143212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320008;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 52197 54019 . - . ID=Physo143212;Parent=Physo143212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 52197 52409 . - 0 ID=Physo143212;Parent=Physo143212;rank=3 scaffold_132 . exon 52197 52409 . - . ID=Physo143212.3;Parent=Physo143212;constitutive=1;rank=3 scaffold_132 . CDS 52518 52747 . - 0 ID=Physo143212;Parent=Physo143212;rank=2 scaffold_132 . exon 52518 52747 . - . ID=Physo143212.2;Parent=Physo143212;constitutive=1;ensembl_phase=1;rank=2 scaffold_132 . CDS 52906 54019 . - 0 ID=Physo143212;Parent=Physo143212;rank=1 scaffold_132 . exon 52906 54019 . - . ID=Physo143212.1;Parent=Physo143212;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 . repeat_region 60334 60379 . ? . description=trf scaffold_132 . biological_region 60573 60577 0.999 + . logic_name=eponine scaffold_132 . biological_region 60579 60582 0.999 - . logic_name=eponine scaffold_132 . biological_region 60802 60809 0.999 - . logic_name=eponine scaffold_132 . biological_region 60814 60819 0.999 - . logic_name=eponine scaffold_132 . biological_region 64243 64244 0.999 - . logic_name=eponine scaffold_132 . biological_region 64417 64418 0.999 + . logic_name=eponine scaffold_132 ensembl protein_coding_gene 60485 61355 . + . ID=Physo143213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320009;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 60485 61355 . + . ID=Physo143213;Parent=Physo143213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . exon 60485 60895 . + . ID=Physo143213.1;Parent=Physo143213;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_132 . CDS 60501 60895 . + 0 ID=Physo143213;Parent=Physo143213;rank=1 scaffold_132 . CDS 61019 61319 . + 0 ID=Physo143213;Parent=Physo143213;rank=2 scaffold_132 . exon 61019 61355 . + . ID=Physo143213.2;Parent=Physo143213;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_132 ensembl protein_coding_gene 65320 66920 . - . ID=Physo143214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320010;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 65320 66920 . - . ID=Physo143214;Parent=Physo143214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 65320 65340 . - 0 ID=Physo143214;Parent=Physo143214;rank=4 scaffold_132 . exon 65320 65340 . - . ID=Physo143214.4;Parent=Physo143214;constitutive=1;rank=4 scaffold_132 . CDS 65468 65890 . - 0 ID=Physo143214;Parent=Physo143214;rank=3 scaffold_132 . exon 65468 65890 . - . ID=Physo143214.3;Parent=Physo143214;constitutive=1;rank=3 scaffold_132 . CDS 65944 65997 . - 0 ID=Physo143214;Parent=Physo143214;rank=2 scaffold_132 . exon 65944 65997 . - . ID=Physo143214.2;Parent=Physo143214;constitutive=1;rank=2 scaffold_132 . CDS 66045 66920 . - 0 ID=Physo143214;Parent=Physo143214;rank=1 scaffold_132 . exon 66045 66920 . - . ID=Physo143214.1;Parent=Physo143214;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 67491 68951 . - . ID=Physo143215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320011;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 67491 68951 . - . ID=Physo143215;Parent=Physo143215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 67491 68546 . - 0 ID=Physo143215;Parent=Physo143215;rank=3 scaffold_132 . exon 67491 68546 . - . ID=Physo143215.3;Parent=Physo143215;constitutive=1;rank=3 scaffold_132 . CDS 68592 68667 . - 0 ID=Physo143215;Parent=Physo143215;rank=2 scaffold_132 . exon 68592 68667 . - . ID=Physo143215.2;Parent=Physo143215;constitutive=1;ensembl_phase=2;rank=2 scaffold_132 . CDS 68728 68951 . - 0 ID=Physo143215;Parent=Physo143215;rank=1 scaffold_132 . exon 68728 68951 . - . ID=Physo143215.1;Parent=Physo143215;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 ensembl protein_coding_gene 74886 75567 . - . ID=Physo143216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320012;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 74886 75567 . - . ID=Physo143216;Parent=Physo143216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 74886 75536 . - 0 ID=Physo143216;Parent=Physo143216;rank=2 scaffold_132 . exon 74886 75536 . - . ID=Physo143216.2;Parent=Physo143216;constitutive=1;rank=2 scaffold_132 . CDS 75562 75567 . - 0 ID=Physo143216;Parent=Physo143216;rank=1 scaffold_132 . exon 75562 75567 . - . ID=Physo143216.1;Parent=Physo143216;constitutive=1;rank=1 scaffold_132 . biological_region 76164 76165 0.999 + . logic_name=eponine scaffold_132 . biological_region 77742 77744 0.999 + . logic_name=eponine scaffold_132 . biological_region 78800 78800 0.999 + . logic_name=eponine scaffold_132 . biological_region 78816 78818 0.999 + . logic_name=eponine scaffold_132 . biological_region 79117 79123 0.999 + . logic_name=eponine scaffold_132 . biological_region 79123 79124 0.999 - . logic_name=eponine scaffold_132 . repeat_region 79174 79251 . ? . description=trf scaffold_132 . biological_region 79238 79244 0.999 - . logic_name=eponine scaffold_132 . biological_region 82864 82870 0.999 + . logic_name=eponine scaffold_132 . biological_region 83027 83032 0.999 - . logic_name=eponine scaffold_132 . biological_region 83307 83310 0.999 + . logic_name=eponine scaffold_132 . biological_region 83334 83334 0.999 - . logic_name=eponine scaffold_132 . repeat_region 83416 83465 . ? . description=dust scaffold_132 . biological_region 84478 84482 0.999 + . logic_name=eponine scaffold_132 ensembl protein_coding_gene 79835 80206 . - . ID=Physo109546;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1320001;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 79835 80206 . - . ID=Physo109546;Parent=Physo109546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 79835 80206 . - 0 ID=Physo109546;Parent=Physo109546;rank=1 scaffold_132 . exon 79835 80206 . - . ID=Physo109546.1;Parent=Physo109546;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 76179 77108 . + . ID=Physo143217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320013;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 76179 77108 . + . ID=Physo143217;Parent=Physo143217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 76179 77108 . + 0 ID=Physo143217;Parent=Physo143217;rank=1 scaffold_132 . exon 76179 77108 . + . ID=Physo143217.1;Parent=Physo143217;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 78276 79681 . - . ID=Physo143218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320014;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 78276 79681 . - . ID=Physo143218;Parent=Physo143218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 78276 79247 . - 0 ID=Physo143218;Parent=Physo143218;rank=2 scaffold_132 . exon 78276 79247 . - . ID=Physo143218.2;Parent=Physo143218;constitutive=1;rank=2 scaffold_132 . CDS 79289 79681 . - 0 ID=Physo143218;Parent=Physo143218;rank=1 scaffold_132 . exon 79289 79681 . - . ID=Physo143218.1;Parent=Physo143218;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 80437 85923 . - . ID=Physo143220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320016;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 80437 85923 . - . ID=Physo143220;Parent=Physo143220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 80437 81914 . - 0 ID=Physo143220;Parent=Physo143220;rank=7 scaffold_132 . exon 80437 81914 . - . ID=Physo143220.7;Parent=Physo143220;constitutive=1;ensembl_phase=1;rank=7 scaffold_132 . CDS 82044 82644 . - 0 ID=Physo143220;Parent=Physo143220;rank=6 scaffold_132 . exon 82044 82644 . - . ID=Physo143220.6;Parent=Physo143220;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_132 . CDS 82672 83055 . - 0 ID=Physo143220;Parent=Physo143220;rank=5 scaffold_132 . exon 82672 83055 . - . ID=Physo143220.5;Parent=Physo143220;constitutive=1;rank=5 scaffold_132 . CDS 83160 83212 . - 0 ID=Physo143220;Parent=Physo143220;rank=4 scaffold_132 . exon 83160 83212 . - . ID=Physo143220.4;Parent=Physo143220;constitutive=1;ensembl_phase=1;rank=4 scaffold_132 . CDS 83266 83380 . - 0 ID=Physo143220;Parent=Physo143220;rank=3 scaffold_132 . exon 83266 83380 . - . ID=Physo143220.3;Parent=Physo143220;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_132 . CDS 84118 85247 . - 0 ID=Physo143220;Parent=Physo143220;rank=2 scaffold_132 . exon 84118 85247 . - . ID=Physo143220.2;Parent=Physo143220;constitutive=1;ensembl_phase=1;rank=2 scaffold_132 . CDS 85338 85923 . - 0 ID=Physo143220;Parent=Physo143220;rank=1 scaffold_132 . exon 85338 85923 . - . ID=Physo143220.1;Parent=Physo143220;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 ensembl protein_coding_gene 92400 93391 . + . ID=Physo143221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320017;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 92400 93391 . + . ID=Physo143221;Parent=Physo143221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 92400 93352 . + 0 ID=Physo143221;Parent=Physo143221;rank=1 scaffold_132 . exon 92400 93352 . + . ID=Physo143221.1;Parent=Physo143221;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 . CDS 93373 93391 . + 0 ID=Physo143221;Parent=Physo143221;rank=2 scaffold_132 . exon 93373 93391 . + . ID=Physo143221.2;Parent=Physo143221;constitutive=1;ensembl_phase=2;rank=2 scaffold_132 ensembl protein_coding_gene 94037 95171 . - . ID=Physo143222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320018;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 94037 95171 . - . ID=Physo143222;Parent=Physo143222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 94037 94057 . - 0 ID=Physo143222;Parent=Physo143222;rank=3 scaffold_132 . exon 94037 94057 . - . ID=Physo143222.3;Parent=Physo143222;constitutive=1;rank=3 scaffold_132 . CDS 94175 95038 . - 0 ID=Physo143222;Parent=Physo143222;rank=2 scaffold_132 . exon 94175 95038 . - . ID=Physo143222.2;Parent=Physo143222;constitutive=1;rank=2 scaffold_132 . CDS 95091 95171 . - 0 ID=Physo143222;Parent=Physo143222;rank=1 scaffold_132 . repeat_region 95926 95957 . ? . description=trf scaffold_132 . repeat_region 99116 99171 . ? . description=trf scaffold_132 . repeat_region 102893 102942 . ? . description=trf scaffold_132 . exon 95091 95171 . - . ID=Physo143222.1;Parent=Physo143222;constitutive=1;rank=1 scaffold_132 . repeat_region 106011 106021 . ? . description=dust scaffold_132 . repeat_region 106066 106115 . ? . description=dust scaffold_132 . biological_region 106779 106784 0.999 - . logic_name=eponine scaffold_132 . biological_region 108056 108056 0.999 - . logic_name=eponine scaffold_132 . biological_region 108597 108597 0.999 - . logic_name=eponine scaffold_132 . repeat_region 111952 111959 . ? . description=dust scaffold_132 . repeat_region 113233 113250 . ? . description=dust scaffold_132 ensembl protein_coding_gene 104307 105917 . + . ID=Physo143223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320019;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 104307 105917 . + . ID=Physo143223;Parent=Physo143223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 104307 104801 . + 0 ID=Physo143223;Parent=Physo143223;rank=1 scaffold_132 . exon 104307 104801 . + . ID=Physo143223.1;Parent=Physo143223;constitutive=1;rank=1 scaffold_132 . CDS 104915 104999 . + 0 ID=Physo143223;Parent=Physo143223;rank=2 scaffold_132 . exon 104915 104999 . + . ID=Physo143223.2;Parent=Physo143223;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_132 . CDS 105058 105917 . + 0 ID=Physo143223;Parent=Physo143223;rank=3 scaffold_132 . exon 105058 105917 . + . ID=Physo143223.3;Parent=Physo143223;constitutive=1;ensembl_phase=1;rank=3 scaffold_132 ensembl protein_coding_gene 106503 108617 . + . ID=Physo143224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320020;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 106503 108617 . + . ID=Physo143224;Parent=Physo143224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 106503 108617 . + 0 ID=Physo143224;Parent=Physo143224;rank=1 scaffold_132 . exon 106503 108617 . + . ID=Physo143224.1;Parent=Physo143224;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 110818 111716 . + . ID=Physo143225;biotype=protein_coding;description=PsAvh204.2 [Source:UniProtKB/TrEMBL%3BAcc:E0W5N1];external_name=estExt_fgenesh1_pg.C_1320021;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 110818 111716 . + . ID=Physo143225;Parent=Physo143225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 110818 111152 . + 0 ID=Physo143225;Parent=Physo143225;rank=1 scaffold_132 . exon 110818 111152 . + . ID=Physo143225.1;Parent=Physo143225;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 . CDS 111338 111716 . + 0 ID=Physo143225;Parent=Physo143225;rank=2 scaffold_132 . exon 111338 111716 . + . ID=Physo143225.2;Parent=Physo143225;constitutive=1;ensembl_phase=2;rank=2 scaffold_132 ensembl protein_coding_gene 117299 118816 . + . ID=Physo143226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320022;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 117299 118816 . + . ID=Physo143226;Parent=Physo143226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 117299 118816 . + 0 ID=Physo143226;Parent=Physo143226;rank=1 scaffold_132 . exon 117299 118816 . + . ID=Physo143226.1;Parent=Physo143226;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 119125 120126 . - . ID=Physo143227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320023;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 119125 120126 . - . ID=Physo143227;Parent=Physo143227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 119125 120033 . - 0 ID=Physo143227;Parent=Physo143227;rank=2 scaffold_132 . exon 119125 120033 . - . ID=Physo143227.2;Parent=Physo143227;constitutive=1;rank=2 scaffold_132 . CDS 120115 120126 . - 0 ID=Physo143227;Parent=Physo143227;rank=1 scaffold_132 . exon 120115 120126 . - . ID=Physo143227.1;Parent=Physo143227;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 120483 124612 . + . ID=Physo143228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320024;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 120483 124612 . + . ID=Physo143228;Parent=Physo143228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 120483 121577 . + 0 ID=Physo143228;Parent=Physo143228;rank=1 scaffold_132 . exon 120483 121577 . + . ID=Physo143228.1;Parent=Physo143228;constitutive=1;rank=1 scaffold_132 . CDS 121649 122537 . + 0 ID=Physo143228;Parent=Physo143228;rank=2 scaffold_132 . exon 121649 122537 . + . ID=Physo143228.2;Parent=Physo143228;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_132 . CDS 123309 124612 . + 0 ID=Physo143228;Parent=Physo143228;rank=3 scaffold_132 . biological_region 125574 125577 0.999 + . logic_name=eponine scaffold_132 . biological_region 126040 126044 0.999 + . logic_name=eponine scaffold_132 . biological_region 126670 126673 0.999 - . logic_name=eponine scaffold_132 . biological_region 126701 126701 0.999 + . logic_name=eponine scaffold_132 . repeat_region 127882 127931 . ? . description=dust scaffold_132 . repeat_region 129585 129634 . ? . description=dust scaffold_132 . biological_region 130047 130047 0.999 - . logic_name=eponine scaffold_132 . biological_region 130684 130686 0.999 - . logic_name=eponine scaffold_132 . repeat_region 130726 130969 . ? . description=dust scaffold_132 . biological_region 131308 131311 0.999 - . logic_name=eponine scaffold_132 . biological_region 131339 131339 0.999 + . logic_name=eponine scaffold_132 . exon 123309 124612 . + . ID=Physo143228.3;Parent=Physo143228;constitutive=1;ensembl_phase=1;rank=3 scaffold_132 ensembl protein_coding_gene 124890 126944 . - . ID=Physo143229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320025;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 124890 126944 . - . ID=Physo143229;Parent=Physo143229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 124890 126944 . - 0 ID=Physo143229;Parent=Physo143229;rank=1 scaffold_132 . exon 124890 126944 . - . ID=Physo143229.1;Parent=Physo143229;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 127970 128710 . + . ID=Physo143230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320026;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 127970 128710 . + . ID=Physo143230;Parent=Physo143230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 127970 128074 . + 0 ID=Physo143230;Parent=Physo143230;rank=1 scaffold_132 . exon 127970 128074 . + . ID=Physo143230.1;Parent=Physo143230;constitutive=1;rank=1 scaffold_132 . CDS 128146 128439 . + 0 ID=Physo143230;Parent=Physo143230;rank=2 scaffold_132 . exon 128146 128439 . + . ID=Physo143230.2;Parent=Physo143230;constitutive=1;rank=2 scaffold_132 . CDS 128648 128710 . + 0 ID=Physo143230;Parent=Physo143230;rank=3 scaffold_132 . exon 128648 128710 . + . ID=Physo143230.3;Parent=Physo143230;constitutive=1;rank=3 scaffold_132 ensembl protein_coding_gene 130492 131582 . - . ID=Physo143231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320027;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 130492 131582 . - . ID=Physo143231;Parent=Physo143231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 130492 130674 . - 0 ID=Physo143231;Parent=Physo143231;rank=2 scaffold_132 . exon 130492 130674 . - . ID=Physo143231.2;Parent=Physo143231;constitutive=1;rank=2 scaffold_132 . CDS 131010 131582 . - 0 ID=Physo143231;Parent=Physo143231;rank=1 scaffold_132 . exon 131010 131582 . - . ID=Physo143231.1;Parent=Physo143231;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 132351 134438 . - . ID=Physo143232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320028;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 132351 134438 . - . ID=Physo143232;Parent=Physo143232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 132351 134438 . - 0 ID=Physo143232;Parent=Physo143232;rank=1 scaffold_132 . exon 132351 134438 . - . ID=Physo143232.1;Parent=Physo143232;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 135860 137311 . + . ID=Physo143233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320029;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 135860 137311 . + . ID=Physo143233;Parent=Physo143233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 135860 137311 . + 0 ID=Physo143233;Parent=Physo143233;rank=1 scaffold_132 . exon 135860 137311 . + . ID=Physo143233.1;Parent=Physo143233;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 138373 140463 . + . ID=Physo143234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320030;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 138373 140463 . + . ID=Physo143234;Parent=Physo143234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 138373 140463 . + 0 ID=Physo143234;Parent=Physo143234;rank=1 scaffold_132 . exon 138373 140463 . + . ID=Physo143234.1;Parent=Physo143234;constitutive=1;rank=1 scaffold_132 . biological_region 142639 142640 0.999 + . logic_name=eponine scaffold_132 . biological_region 143015 143022 0.999 + . logic_name=eponine scaffold_132 . biological_region 143062 143069 0.999 + . logic_name=eponine scaffold_132 . biological_region 143793 143796 0.999 - . logic_name=eponine scaffold_132 . biological_region 144515 144518 0.999 + . logic_name=eponine scaffold_132 . biological_region 145174 145178 0.999 - . logic_name=eponine scaffold_132 . biological_region 146509 146510 0.999 - . logic_name=eponine scaffold_132 . repeat_region 146868 146875 . ? . description=dust scaffold_132 . repeat_region 147776 147825 . ? . description=dust scaffold_132 . repeat_region 149421 149429 . ? . description=dust scaffold_132 . repeat_region 150217 150266 . ? . description=dust scaffold_132 . repeat_region 150643 150651 . ? . description=dust scaffold_132 ensembl protein_coding_gene 145621 146253 . + . ID=Physo143235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320031;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 145621 146253 . + . ID=Physo143235;Parent=Physo143235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 145621 146253 . + 0 ID=Physo143235;Parent=Physo143235;rank=1 scaffold_132 . exon 145621 146253 . + . ID=Physo143235.1;Parent=Physo143235;constitutive=1;rank=1 scaffold_132 ensembl protein_coding_gene 148734 149782 . - . ID=Physo143236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320032;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 148734 149782 . - . ID=Physo143236;Parent=Physo143236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 148734 148816 . - 0 ID=Physo143236;Parent=Physo143236;rank=3 scaffold_132 . exon 148734 148816 . - . ID=Physo143236.3;Parent=Physo143236;constitutive=1;ensembl_phase=1;rank=3 scaffold_132 . CDS 148955 149388 . - 0 ID=Physo143236;Parent=Physo143236;rank=2 scaffold_132 . exon 148955 149388 . - . ID=Physo143236.2;Parent=Physo143236;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_132 . CDS 149715 149782 . - 0 ID=Physo143236;Parent=Physo143236;rank=1 scaffold_132 . exon 149715 149782 . - . ID=Physo143236.1;Parent=Physo143236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_132 . repeat_region 157760 157792 . ? . description=trf scaffold_132 ensembl protein_coding_gene 156969 157726 . - . ID=Physo143237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320033;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 156969 157726 . - . ID=Physo143237;Parent=Physo143237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 156969 157078 . - 0 ID=Physo143237;Parent=Physo143237;rank=3 scaffold_132 . exon 156969 157078 . - . ID=Physo143237.3;Parent=Physo143237;constitutive=1;ensembl_phase=1;rank=3 scaffold_132 . CDS 157306 157584 . - 0 ID=Physo143237;Parent=Physo143237;rank=2 scaffold_132 . exon 157306 157584 . - . ID=Physo143237.2;Parent=Physo143237;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_132 . CDS 157708 157726 . - 0 ID=Physo143237;Parent=Physo143237;rank=1 scaffold_132 . exon 157708 157726 . - . ID=Physo143237.1;Parent=Physo143237;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_132 ensembl protein_coding_gene 159897 160739 . + . ID=Physo143238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1320034;logic_name=jgi_physo1_1 scaffold_132 ensembl transcript 159897 160739 . + . ID=Physo143238;Parent=Physo143238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_132 . CDS 159897 160739 . + 0 ID=Physo143238;Parent=Physo143238;rank=1 scaffold_132 . exon 159897 160739 . + . ID=Physo143238.1;Parent=Physo143238;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_131 1 162181 scaffold_131 . repeat_region 1495 1544 . ? . description=dust scaffold_131 . biological_region 2083 2088 0.999 - . logic_name=eponine scaffold_131 . biological_region 2097 2099 0.999 - . logic_name=eponine scaffold_131 . repeat_region 3575 3582 . ? . description=dust scaffold_131 . repeat_region 4434 4441 . ? . description=dust scaffold_131 . biological_region 6176 6180 0.999 - . logic_name=eponine scaffold_131 . biological_region 6208 6213 0.999 - . logic_name=eponine scaffold_131 . biological_region 6264 6269 0.999 + . logic_name=eponine scaffold_131 ensembl protein_coding_gene 587 1372 . + . ID=Physo109542;biotype=protein_coding;description=Glucanase inhibitor protein 3 [Source:UniProtKB/TrEMBL%3BAcc:Q945T8];external_name=estExt_fgenesh1_pm.C_1310001;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 587 1372 . + . ID=Physo109542;Parent=Physo109542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 587 1372 . + 0 ID=Physo109542;Parent=Physo109542;rank=1 scaffold_131 . exon 587 1372 . + . ID=Physo109542.1;Parent=Physo109542;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 1935 4320 . + . ID=Physo143160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310002;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 1935 4320 . + . ID=Physo143160;Parent=Physo143160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 1935 2498 . + 0 ID=Physo143160;Parent=Physo143160;rank=1 scaffold_131 . exon 1935 2498 . + . ID=Physo143160.1;Parent=Physo143160;constitutive=1;rank=1 scaffold_131 . CDS 2719 3561 . + 0 ID=Physo143160;Parent=Physo143160;rank=2 scaffold_131 . exon 2719 3561 . + . ID=Physo143160.2;Parent=Physo143160;constitutive=1;rank=2 scaffold_131 . CDS 3710 3736 . + 0 ID=Physo143160;Parent=Physo143160;rank=3 scaffold_131 . exon 3710 3736 . + . ID=Physo143160.3;Parent=Physo143160;constitutive=1;rank=3 scaffold_131 . CDS 3818 3952 . + 0 ID=Physo143160;Parent=Physo143160;rank=4 scaffold_131 . exon 3818 3952 . + . ID=Physo143160.4;Parent=Physo143160;constitutive=1;rank=4 scaffold_131 . CDS 4031 4102 . + 0 ID=Physo143160;Parent=Physo143160;rank=5 scaffold_131 . exon 4031 4102 . + . ID=Physo143160.5;Parent=Physo143160;constitutive=1;rank=5 scaffold_131 . CDS 4135 4320 . + 0 ID=Physo143160;Parent=Physo143160;rank=6 scaffold_131 . exon 4135 4320 . + . ID=Physo143160.6;Parent=Physo143160;constitutive=1;rank=6 scaffold_131 ensembl protein_coding_gene 5781 8498 . + . ID=Physo143161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310003;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 5781 8498 . + . ID=Physo143161;Parent=Physo143161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 5781 8498 . + 0 ID=Physo143161;Parent=Physo143161;rank=1 scaffold_131 . exon 5781 8498 . + . ID=Physo143161.1;Parent=Physo143161;constitutive=1;rank=1 scaffold_131 . repeat_region 11329 11365 . ? . description=trf scaffold_131 . repeat_region 11544 11602 . ? . description=trf scaffold_131 . repeat_region 13633 13658 . ? . description=trf scaffold_131 ensembl protein_coding_gene 12774 13935 . - . ID=Physo143162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310004;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 12774 13935 . - . ID=Physo143162;Parent=Physo143162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 12774 13627 . - 0 ID=Physo143162;Parent=Physo143162;rank=2 scaffold_131 . exon 12774 13627 . - . ID=Physo143162.2;Parent=Physo143162;constitutive=1;ensembl_phase=1;rank=2 scaffold_131 . CDS 13734 13935 . - 0 ID=Physo143162;Parent=Physo143162;rank=1 scaffold_131 . exon 13734 13935 . - . ID=Physo143162.1;Parent=Physo143162;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 ensembl protein_coding_gene 14203 17463 . - . ID=Physo143163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310005;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 14203 17463 . - . ID=Physo143163;Parent=Physo143163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 14203 17463 . - 0 ID=Physo143163;Parent=Physo143163;rank=1 scaffold_131 . exon 14203 17463 . - . ID=Physo143163.1;Parent=Physo143163;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 17930 19567 . - . ID=Physo143164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310006;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 17930 19567 . - . ID=Physo143164;Parent=Physo143164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 17930 19567 . - 0 ID=Physo143164;Parent=Physo143164;rank=1 scaffold_131 . exon 17930 19567 . - . ID=Physo143164.1;Parent=Physo143164;constitutive=1;rank=1 scaffold_131 . biological_region 19142 19148 0.999 + . logic_name=eponine scaffold_131 . biological_region 19348 19349 0.999 + . logic_name=eponine scaffold_131 . biological_region 20482 20484 0.999 - . logic_name=eponine scaffold_131 . repeat_region 25020 25094 . ? . description=dust scaffold_131 . biological_region 25244 25245 0.999 + . logic_name=eponine scaffold_131 . biological_region 25444 25444 0.999 - . logic_name=eponine scaffold_131 . biological_region 25477 25482 0.999 - . logic_name=eponine scaffold_131 . biological_region 25526 25530 0.999 - . logic_name=eponine scaffold_131 . biological_region 25644 25647 0.999 - . logic_name=eponine scaffold_131 . biological_region 25665 25667 0.999 - . logic_name=eponine scaffold_131 . biological_region 25758 25759 0.999 - . logic_name=eponine scaffold_131 . repeat_region 26203 26228 . ? . description=dust scaffold_131 ensembl protein_coding_gene 25869 26466 . + . ID=Physo109543;biotype=protein_coding;description=Calcium-dependent protein 4 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U4];external_name=estExt_fgenesh1_pm.C_1310002;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 25869 26466 . + . ID=Physo109543;Parent=Physo109543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 25869 26141 . + 0 ID=Physo109543;Parent=Physo109543;rank=1 scaffold_131 . exon 25869 26141 . + . ID=Physo109543.1;Parent=Physo109543;constitutive=1;rank=1 scaffold_131 . CDS 26239 26466 . + 0 ID=Physo109543;Parent=Physo109543;rank=2 scaffold_131 . exon 26239 26466 . + . ID=Physo109543.2;Parent=Physo109543;constitutive=1;rank=2 scaffold_131 ensembl protein_coding_gene 26544 27745 . - . ID=Physo109544;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1310003;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 26544 27745 . - . ID=Physo109544;Parent=Physo109544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . exon 26544 26738 . - . ID=Physo109544.3;Parent=Physo109544;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_131 . CDS 26559 26738 . - 0 ID=Physo109544;Parent=Physo109544;rank=3 scaffold_131 . CDS 26901 27518 . - 0 ID=Physo109544;Parent=Physo109544;rank=2 scaffold_131 . exon 26901 27518 . - . ID=Physo109544.2;Parent=Physo109544;constitutive=1;rank=2 scaffold_131 . CDS 27644 27745 . - 0 ID=Physo109544;Parent=Physo109544;rank=1 scaffold_131 . exon 27644 27745 . - . ID=Physo109544.1;Parent=Physo109544;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 20128 21519 . + . ID=Physo143165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310007;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 20128 21519 . + . ID=Physo143165;Parent=Physo143165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 20128 21519 . + 0 ID=Physo143165;Parent=Physo143165;rank=1 scaffold_131 . exon 20128 21519 . + . ID=Physo143165.1;Parent=Physo143165;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 22891 23937 . + . ID=Physo143166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310008;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 22891 23937 . + . ID=Physo143166;Parent=Physo143166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 22891 23937 . + 0 ID=Physo143166;Parent=Physo143166;rank=1 scaffold_131 . exon 22891 23937 . + . ID=Physo143166.1;Parent=Physo143166;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 24251 25540 . - . ID=Physo143167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310009;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 24251 25540 . - . ID=Physo143167;Parent=Physo143167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 24251 25540 . - 0 ID=Physo143167;Parent=Physo143167;rank=1 scaffold_131 . exon 24251 25540 . - . ID=Physo143167.1;Parent=Physo143167;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 27856 28651 . + . ID=Physo143170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310012;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 27856 28651 . + . ID=Physo143170;Parent=Physo143170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . exon 27856 28320 . + . ID=Physo143170.1;Parent=Physo143170;constitutive=1;ensembl_phase=-1;rank=1 scaffold_131 . CDS 27877 28320 . + 0 ID=Physo143170;Parent=Physo143170;rank=1 scaffold_131 . CDS 28404 28520 . + 0 ID=Physo143170;Parent=Physo143170;rank=2 scaffold_131 . exon 28404 28651 . + . ID=Physo143170.2;Parent=Physo143170;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_131 . repeat_region 36258 36303 . ? . description=trf scaffold_131 ensembl protein_coding_gene 33801 34445 . - . ID=Physo143171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310013;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 33801 34445 . - . ID=Physo143171;Parent=Physo143171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 33801 34445 . - 0 ID=Physo143171;Parent=Physo143171;rank=1 scaffold_131 . exon 33801 34445 . - . ID=Physo143171.1;Parent=Physo143171;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 34647 38084 . + . ID=Physo143172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310014;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 34647 38084 . + . ID=Physo143172;Parent=Physo143172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 34647 34860 . + 0 ID=Physo143172;Parent=Physo143172;rank=1 scaffold_131 . exon 34647 34860 . + . ID=Physo143172.1;Parent=Physo143172;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 . CDS 34942 34982 . + 0 ID=Physo143172;Parent=Physo143172;rank=2 scaffold_131 . exon 34942 34982 . + . ID=Physo143172.2;Parent=Physo143172;constitutive=1;ensembl_phase=1;rank=2 scaffold_131 . CDS 35059 35131 . + 0 ID=Physo143172;Parent=Physo143172;rank=3 scaffold_131 . exon 35059 35131 . + . ID=Physo143172.3;Parent=Physo143172;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_131 . CDS 35201 35295 . + 0 ID=Physo143172;Parent=Physo143172;rank=4 scaffold_131 . exon 35201 35295 . + . ID=Physo143172.4;Parent=Physo143172;constitutive=1;ensembl_phase=1;rank=4 scaffold_131 . CDS 35362 35628 . + 0 ID=Physo143172;Parent=Physo143172;rank=5 scaffold_131 . exon 35362 35628 . + . ID=Physo143172.5;Parent=Physo143172;constitutive=1;rank=5 scaffold_131 . CDS 35753 35941 . + 0 ID=Physo143172;Parent=Physo143172;rank=6 scaffold_131 . exon 35753 35941 . + . ID=Physo143172.6;Parent=Physo143172;constitutive=1;rank=6 scaffold_131 . CDS 36033 38084 . + 0 ID=Physo143172;Parent=Physo143172;rank=7 scaffold_131 . exon 36033 38084 . + . ID=Physo143172.7;Parent=Physo143172;constitutive=1;rank=7 scaffold_131 . biological_region 38585 38589 0.999 + . logic_name=eponine scaffold_131 . biological_region 39162 39163 0.999 - . logic_name=eponine scaffold_131 . biological_region 39182 39183 0.999 - . logic_name=eponine scaffold_131 . biological_region 39269 39272 0.999 - . logic_name=eponine scaffold_131 . biological_region 39323 39330 0.999 + . logic_name=eponine scaffold_131 . biological_region 39346 39349 0.999 + . logic_name=eponine scaffold_131 . biological_region 39350 39357 0.999 - . logic_name=eponine scaffold_131 . biological_region 39405 39412 0.999 + . logic_name=eponine scaffold_131 . biological_region 39406 39407 0.999 - . logic_name=eponine scaffold_131 . biological_region 39441 39446 0.999 + . logic_name=eponine scaffold_131 . biological_region 39454 39456 0.999 - . logic_name=eponine scaffold_131 . repeat_region 39667 39696 . ? . description=dust scaffold_131 . biological_region 39979 39981 0.999 + . logic_name=eponine scaffold_131 . repeat_region 41375 41417 . ? . description=dust scaffold_131 . biological_region 42243 42249 0.999 - . logic_name=eponine scaffold_131 . biological_region 43377 43378 0.999 + . logic_name=eponine scaffold_131 . biological_region 43508 43510 0.999 - . logic_name=eponine scaffold_131 . biological_region 44736 44738 0.999 - . logic_name=eponine scaffold_131 . biological_region 44756 44758 0.999 - . logic_name=eponine scaffold_131 . biological_region 44937 44940 0.999 - . logic_name=eponine scaffold_131 . biological_region 44977 44980 0.999 - . logic_name=eponine scaffold_131 . biological_region 46757 46762 0.999 + . logic_name=eponine scaffold_131 . biological_region 46808 46810 0.999 - . logic_name=eponine scaffold_131 . biological_region 46814 46820 0.999 - . logic_name=eponine scaffold_131 ensembl protein_coding_gene 38206 38910 . - . ID=Physo143173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310015;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 38206 38910 . - . ID=Physo143173;Parent=Physo143173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 38206 38910 . - 0 ID=Physo143173;Parent=Physo143173;rank=1 scaffold_131 . exon 38206 38910 . - . ID=Physo143173.1;Parent=Physo143173;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 40027 43536 . + . ID=Physo143174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310016;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 40027 43536 . + . ID=Physo143174;Parent=Physo143174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 40027 40196 . + 0 ID=Physo143174;Parent=Physo143174;rank=1 scaffold_131 . exon 40027 40196 . + . ID=Physo143174.1;Parent=Physo143174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_131 . CDS 40338 40362 . + 0 ID=Physo143174;Parent=Physo143174;rank=2 scaffold_131 . exon 40338 40362 . + . ID=Physo143174.2;Parent=Physo143174;constitutive=1;ensembl_phase=2;rank=2 scaffold_131 . CDS 40453 43536 . + 0 ID=Physo143174;Parent=Physo143174;rank=3 scaffold_131 . exon 40453 43536 . + . ID=Physo143174.3;Parent=Physo143174;constitutive=1;rank=3 scaffold_131 ensembl protein_coding_gene 47558 52081 . + . ID=Physo143176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310018;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 47558 52081 . + . ID=Physo143176;Parent=Physo143176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 47558 48253 . + 0 ID=Physo143176;Parent=Physo143176;rank=1 scaffold_131 . exon 47558 48253 . + . ID=Physo143176.1;Parent=Physo143176;constitutive=1;rank=1 scaffold_131 . CDS 48280 48433 . + 0 ID=Physo143176;Parent=Physo143176;rank=2 scaffold_131 . CDS 48547 48873 . + 0 ID=Physo143176;Parent=Physo143176;rank=3 scaffold_131 . CDS 49270 49285 . + 0 ID=Physo143176;Parent=Physo143176;rank=4 scaffold_131 . CDS 49322 49478 . + 0 ID=Physo143176;Parent=Physo143176;rank=5 scaffold_131 . CDS 49800 50304 . + 0 ID=Physo143176;Parent=Physo143176;rank=6 scaffold_131 . CDS 50449 50562 . + 0 ID=Physo143176;Parent=Physo143176;rank=7 scaffold_131 . CDS 50685 52081 . + 0 ID=Physo143176;Parent=Physo143176;rank=8 scaffold_131 ensembl protein_coding_gene 43873 46832 . - . ID=Physo158718;biotype=protein_coding;external_name=C_scaffold_131000004;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 43873 46832 . - . ID=Physo158718;Parent=Physo158718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 43873 44050 . - 0 ID=Physo158718;Parent=Physo158718;rank=5 scaffold_131 . exon 43873 44050 . - . ID=Physo158718.5;Parent=Physo158718;constitutive=1;ensembl_phase=2;rank=5 scaffold_131 . CDS 44095 44466 . - 0 ID=Physo158718;Parent=Physo158718;rank=4 scaffold_131 . exon 44095 44466 . - . ID=Physo158718.4;Parent=Physo158718;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_131 . CDS 44509 44664 . - 0 ID=Physo158718;Parent=Physo158718;rank=3 scaffold_131 . exon 44509 44664 . - . ID=Physo158718.3;Parent=Physo158718;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_131 . CDS 44728 45103 . - 0 ID=Physo158718;Parent=Physo158718;rank=2 scaffold_131 . exon 44728 45103 . - . ID=Physo158718.2;Parent=Physo158718;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_131 . CDS 45146 46832 . - 0 ID=Physo158718;Parent=Physo158718;rank=1 scaffold_131 . exon 45146 46832 . - . ID=Physo158718.1;Parent=Physo158718;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 . repeat_region 48761 48803 . ? . description=trf scaffold_131 . repeat_region 51604 51658 . ? . description=trf scaffold_131 . repeat_region 51625 51661 . ? . description=trf scaffold_131 . repeat_region 53261 53337 . + . description=Polinton-1_PI scaffold_131 . repeat_region 56703 56725 . ? . description=trf scaffold_131 . repeat_region 56824 56913 . ? . description=trf scaffold_131 . repeat_region 57062 57183 . + . description=Polinton-1_PI scaffold_131 . exon 48280 48433 . + . ID=Physo143176.2;Parent=Physo143176;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_131 . exon 48547 48873 . + . ID=Physo143176.3;Parent=Physo143176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_131 . exon 49270 49285 . + . ID=Physo143176.4;Parent=Physo143176;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_131 . exon 49322 49478 . + . ID=Physo143176.5;Parent=Physo143176;constitutive=1;ensembl_phase=2;rank=5 scaffold_131 . exon 49800 50304 . + . ID=Physo143176.6;Parent=Physo143176;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_131 . exon 50449 50562 . + . ID=Physo143176.7;Parent=Physo143176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_131 . exon 50685 52081 . + . ID=Physo143176.8;Parent=Physo143176;constitutive=1;ensembl_phase=1;rank=8 scaffold_131 . biological_region 59658 59664 0.999 + . logic_name=eponine scaffold_131 . biological_region 59679 59680 0.999 + . logic_name=eponine scaffold_131 . biological_region 59722 59729 0.999 + . logic_name=eponine scaffold_131 . biological_region 59757 59767 0.999 + . logic_name=eponine scaffold_131 . biological_region 59812 59814 0.999 - . logic_name=eponine scaffold_131 . biological_region 59844 59845 0.999 - . logic_name=eponine scaffold_131 . biological_region 59853 59858 0.999 - . logic_name=eponine scaffold_131 . repeat_region 62509 62528 . ? . description=dust scaffold_131 . biological_region 62720 62722 0.999 + . logic_name=eponine scaffold_131 . biological_region 62735 62739 0.999 + . logic_name=eponine scaffold_131 . biological_region 62757 62761 0.999 + . logic_name=eponine scaffold_131 . biological_region 62795 62796 0.999 + . logic_name=eponine scaffold_131 . biological_region 62860 62862 0.999 - . logic_name=eponine scaffold_131 . biological_region 62879 62885 0.999 - . logic_name=eponine scaffold_131 . biological_region 62915 62919 0.999 - . logic_name=eponine scaffold_131 . biological_region 63384 63387 0.999 + . logic_name=eponine scaffold_131 . biological_region 63779 63782 0.999 + . logic_name=eponine scaffold_131 . biological_region 63782 63784 0.999 - . logic_name=eponine scaffold_131 . biological_region 63801 63803 0.999 - . logic_name=eponine scaffold_131 . biological_region 63993 63993 0.999 + . logic_name=eponine scaffold_131 . biological_region 64010 64011 0.999 + . logic_name=eponine scaffold_131 . biological_region 64035 64037 0.999 + . logic_name=eponine scaffold_131 . biological_region 64045 64046 0.999 - . logic_name=eponine scaffold_131 . biological_region 64112 64115 0.999 - . logic_name=eponine scaffold_131 . biological_region 64247 64249 0.999 + . logic_name=eponine scaffold_131 . biological_region 64301 64304 0.999 - . logic_name=eponine scaffold_131 . biological_region 64618 64623 0.999 + . logic_name=eponine scaffold_131 . repeat_region 66468 66482 . ? . description=dust scaffold_131 ensembl protein_coding_gene 60627 61903 . + . ID=Physo123568;biotype=protein_coding;external_name=estExt_Genewise1.C_1310018;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 60627 61903 . + . ID=Physo123568;Parent=Physo123568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . exon 60627 61158 . + . ID=Physo123568.1;Parent=Physo123568;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_131 . CDS 60636 61158 . + 0 ID=Physo123568;Parent=Physo123568;rank=1 scaffold_131 . CDS 61234 61632 . + 0 ID=Physo123568;Parent=Physo123568;rank=2 scaffold_131 . exon 61234 61632 . + . ID=Physo123568.2;Parent=Physo123568;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_131 . CDS 61710 61903 . + 0 ID=Physo123568;Parent=Physo123568;rank=3 scaffold_131 . exon 61710 61903 . + . ID=Physo123568.3;Parent=Physo123568;constitutive=1;ensembl_phase=1;rank=3 scaffold_131 ensembl protein_coding_gene 63019 63921 . - . ID=Physo143178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310020;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 63019 63921 . - . ID=Physo143178;Parent=Physo143178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . exon 63019 63921 . - . ID=Physo143178.1;Parent=Physo143178;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_131 . CDS 63119 63877 . - 0 ID=Physo143178;Parent=Physo143178;rank=1 scaffold_131 ensembl protein_coding_gene 76215 77378 . + . ID=Physo109545;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1310004;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 76215 77378 . + . ID=Physo109545;Parent=Physo109545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 76215 77198 . + 0 ID=Physo109545;Parent=Physo109545;rank=1 scaffold_131 . exon 76215 77378 . + . ID=Physo109545.1;Parent=Physo109545;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_131 ensembl protein_coding_gene 69224 72825 . + . ID=Physo123574;biotype=protein_coding;external_name=estExt_Genewise1.C_1310024;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 69224 72825 . + . ID=Physo123574;Parent=Physo123574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . exon 69224 69349 . + . ID=Physo123574.1;Parent=Physo123574;constitutive=1;ensembl_phase=-1;rank=1 scaffold_131 . CDS 69245 69349 . + 0 ID=Physo123574;Parent=Physo123574;rank=1 scaffold_131 . CDS 69419 69562 . + 0 ID=Physo123574;Parent=Physo123574;rank=2 scaffold_131 . exon 69419 69562 . + . ID=Physo123574.2;Parent=Physo123574;constitutive=1;rank=2 scaffold_131 . CDS 69646 70612 . + 0 ID=Physo123574;Parent=Physo123574;rank=3 scaffold_131 . exon 69646 70612 . + . ID=Physo123574.3;Parent=Physo123574;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_131 . CDS 70829 71076 . + 0 ID=Physo123574;Parent=Physo123574;rank=4 scaffold_131 . exon 70829 71076 . + . ID=Physo123574.4;Parent=Physo123574;constitutive=1;ensembl_phase=1;rank=4 scaffold_131 . CDS 71152 71868 . + 0 ID=Physo123574;Parent=Physo123574;rank=5 scaffold_131 . exon 71152 71868 . + . ID=Physo123574.5;Parent=Physo123574;constitutive=1;rank=5 scaffold_131 . CDS 71917 72825 . + 0 ID=Physo123574;Parent=Physo123574;rank=6 scaffold_131 . exon 71917 72825 . + . ID=Physo123574.6;Parent=Physo123574;constitutive=1;rank=6 scaffold_131 ensembl protein_coding_gene 67772 68489 . - . ID=Physo143179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310021;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 67772 68489 . - . ID=Physo143179;Parent=Physo143179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 67772 68307 . - 0 ID=Physo143179;Parent=Physo143179;rank=2 scaffold_131 . exon 67772 68307 . - . ID=Physo143179.2;Parent=Physo143179;constitutive=1;ensembl_phase=1;rank=2 scaffold_131 . CDS 68402 68489 . - 0 ID=Physo143179;Parent=Physo143179;rank=1 scaffold_131 . exon 68402 68489 . - . ID=Physo143179.1;Parent=Physo143179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 ensembl protein_coding_gene 74727 76011 . - . ID=Physo143181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310023;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 74727 76011 . - . ID=Physo143181;Parent=Physo143181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . exon 74727 76011 . - . ID=Physo143181.1;Parent=Physo143181;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_131 . CDS 74773 76011 . - 0 ID=Physo143181;Parent=Physo143181;rank=1 scaffold_131 . biological_region 76560 76562 0.999 + . logic_name=eponine scaffold_131 . biological_region 78414 78414 0.999 - . logic_name=eponine scaffold_131 ensembl protein_coding_gene 77792 79053 . + . ID=Physo143183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310025;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 77792 79053 . + . ID=Physo143183;Parent=Physo143183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 77792 77859 . + 0 ID=Physo143183;Parent=Physo143183;rank=1 scaffold_131 . exon 77792 77859 . + . ID=Physo143183.1;Parent=Physo143183;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_131 . CDS 77937 78107 . + 0 ID=Physo143183;Parent=Physo143183;rank=2 scaffold_131 . exon 77937 78107 . + . ID=Physo143183.2;Parent=Physo143183;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_131 . CDS 78168 79053 . + 0 ID=Physo143183;Parent=Physo143183;rank=3 scaffold_131 . exon 78168 79053 . + . ID=Physo143183.3;Parent=Physo143183;constitutive=1;ensembl_phase=2;rank=3 scaffold_131 ensembl protein_coding_gene 79300 82704 . + . ID=Physo143184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310026;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 79300 82704 . + . ID=Physo143184;Parent=Physo143184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 79300 82704 . + 0 ID=Physo143184;Parent=Physo143184;rank=1 scaffold_131 . exon 79300 82704 . + . ID=Physo143184.1;Parent=Physo143184;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 83392 83816 . - . ID=Physo143185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310027;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 83392 83816 . - . ID=Physo143185;Parent=Physo143185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 83392 83414 . - 0 ID=Physo143185;Parent=Physo143185;rank=2 scaffold_131 . exon 83392 83414 . - . ID=Physo143185.2;Parent=Physo143185;constitutive=1;ensembl_phase=1;rank=2 scaffold_131 . CDS 83447 83816 . - 0 ID=Physo143185;Parent=Physo143185;rank=1 scaffold_131 . exon 83447 83816 . - . ID=Physo143185.1;Parent=Physo143185;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 ensembl protein_coding_gene 85199 86895 . - . ID=Physo143186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310028;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 85199 86895 . - . ID=Physo143186;Parent=Physo143186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 85199 85753 . - 0 ID=Physo143186;Parent=Physo143186;rank=2 scaffold_131 . exon 85199 85753 . - . ID=Physo143186.2;Parent=Physo143186;constitutive=1;rank=2 scaffold_131 . CDS 85807 86895 . - 0 ID=Physo143186;Parent=Physo143186;rank=1 scaffold_131 . exon 85807 86895 . - . ID=Physo143186.1;Parent=Physo143186;constitutive=1;rank=1 scaffold_131 . repeat_region 87705 87743 . ? . description=dust scaffold_131 . repeat_region 88405 88435 . ? . description=trf scaffold_131 ensembl protein_coding_gene 90117 92546 . + . ID=Physo143187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310029;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 90117 92546 . + . ID=Physo143187;Parent=Physo143187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 90117 90196 . + 0 ID=Physo143187;Parent=Physo143187;rank=1 scaffold_131 . exon 90117 90196 . + . ID=Physo143187.1;Parent=Physo143187;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_131 . CDS 90269 92546 . + 0 ID=Physo143187;Parent=Physo143187;rank=2 scaffold_131 . exon 90269 92546 . + . ID=Physo143187.2;Parent=Physo143187;constitutive=1;ensembl_phase=2;rank=2 scaffold_131 ensembl protein_coding_gene 92629 94501 . - . ID=Physo143188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310030;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 92629 94501 . - . ID=Physo143188;Parent=Physo143188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 92629 94195 . - 0 ID=Physo143188;Parent=Physo143188;rank=3 scaffold_131 . exon 92629 94195 . - . ID=Physo143188.3;Parent=Physo143188;constitutive=1;ensembl_phase=2;rank=3 scaffold_131 . CDS 94276 94336 . - 0 ID=Physo143188;Parent=Physo143188;rank=2 scaffold_131 . exon 94276 94336 . - . ID=Physo143188.2;Parent=Physo143188;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_131 . CDS 94396 94501 . - 0 ID=Physo143188;Parent=Physo143188;rank=1 scaffold_131 . exon 94396 94501 . - . ID=Physo143188.1;Parent=Physo143188;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 ensembl protein_coding_gene 94928 98689 . + . ID=Physo143189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310031;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 94928 98689 . + . ID=Physo143189;Parent=Physo143189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 94928 98689 . + 0 ID=Physo143189;Parent=Physo143189;rank=1 scaffold_131 . exon 94928 98689 . + . ID=Physo143189.1;Parent=Physo143189;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 100325 101999 . + . ID=Physo143190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310032;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 100325 101999 . + . ID=Physo143190;Parent=Physo143190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 100325 100557 . + 0 ID=Physo143190;Parent=Physo143190;rank=1 scaffold_131 . exon 100325 100557 . + . ID=Physo143190.1;Parent=Physo143190;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_131 . CDS 100976 101170 . + 0 ID=Physo143190;Parent=Physo143190;rank=2 scaffold_131 . exon 100976 101170 . + . ID=Physo143190.2;Parent=Physo143190;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_131 . CDS 101480 101573 . + 0 ID=Physo143190;Parent=Physo143190;rank=3 scaffold_131 . exon 101480 101573 . + . ID=Physo143190.3;Parent=Physo143190;constitutive=1;ensembl_phase=2;rank=3 scaffold_131 . CDS 101742 101999 . + 0 ID=Physo143190;Parent=Physo143190;rank=4 scaffold_131 . exon 101742 101999 . + . ID=Physo143190.4;Parent=Physo143190;constitutive=1;rank=4 scaffold_131 ensembl protein_coding_gene 104677 108909 . + . ID=Physo143191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310033;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 104677 108909 . + . ID=Physo143191;Parent=Physo143191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 104677 108909 . + 0 ID=Physo143191;Parent=Physo143191;rank=1 scaffold_131 . exon 104677 108909 . + . ID=Physo143191.1;Parent=Physo143191;constitutive=1;rank=1 scaffold_131 . biological_region 106356 106359 0.999 - . logic_name=eponine scaffold_131 . biological_region 106501 106506 0.999 - . logic_name=eponine scaffold_131 . biological_region 106555 106560 0.999 + . logic_name=eponine scaffold_131 . biological_region 108675 108679 0.999 + . logic_name=eponine scaffold_131 . biological_region 108734 108737 0.999 - . logic_name=eponine scaffold_131 . biological_region 108804 108808 0.999 - . logic_name=eponine scaffold_131 . biological_region 108821 108824 0.999 - . logic_name=eponine scaffold_131 . biological_region 112733 112739 0.999 + . logic_name=eponine scaffold_131 . biological_region 113902 113905 0.999 - . logic_name=eponine scaffold_131 . biological_region 113927 113928 0.999 - . logic_name=eponine scaffold_131 . biological_region 113984 113985 0.999 + . logic_name=eponine scaffold_131 ensembl protein_coding_gene 108987 114224 . - . ID=Physo143192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310034;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 108987 114224 . - . ID=Physo143192;Parent=Physo143192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 108987 109146 . - 0 ID=Physo143192;Parent=Physo143192;rank=9 scaffold_131 . exon 108987 109146 . - . ID=Physo143192.9;Parent=Physo143192;constitutive=1;ensembl_phase=2;rank=9 scaffold_131 . CDS 109218 109303 . - 0 ID=Physo143192;Parent=Physo143192;rank=8 scaffold_131 . exon 109218 109303 . - . ID=Physo143192.8;Parent=Physo143192;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_131 . CDS 109374 109536 . - 0 ID=Physo143192;Parent=Physo143192;rank=7 scaffold_131 . exon 109374 109536 . - . ID=Physo143192.7;Parent=Physo143192;constitutive=1;ensembl_phase=2;rank=7 scaffold_131 . CDS 109603 109768 . - 0 ID=Physo143192;Parent=Physo143192;rank=6 scaffold_131 . exon 109603 109768 . - . ID=Physo143192.6;Parent=Physo143192;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_131 . CDS 109792 109808 . - 0 ID=Physo143192;Parent=Physo143192;rank=5 scaffold_131 . exon 109792 109808 . - . ID=Physo143192.5;Parent=Physo143192;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_131 . CDS 109854 112109 . - 0 ID=Physo143192;Parent=Physo143192;rank=4 scaffold_131 . exon 109854 112109 . - . ID=Physo143192.4;Parent=Physo143192;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_131 . CDS 112214 112230 . - 0 ID=Physo143192;Parent=Physo143192;rank=3 scaffold_131 . exon 112214 112230 . - . ID=Physo143192.3;Parent=Physo143192;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_131 . CDS 112520 114098 . - 0 ID=Physo143192;Parent=Physo143192;rank=2 scaffold_131 . exon 112520 114098 . - . ID=Physo143192.2;Parent=Physo143192;constitutive=1;ensembl_phase=2;rank=2 scaffold_131 . CDS 114190 114224 . - 0 ID=Physo143192;Parent=Physo143192;rank=1 scaffold_131 . exon 114190 114224 . - . ID=Physo143192.1;Parent=Physo143192;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_131 . repeat_region 115632 115678 . - . description=Sola3-2_PS scaffold_131 . repeat_region 115917 116408 . - . description=Sola3-2_PS scaffold_131 . repeat_region 116468 116507 . + . description=(CTG)n scaffold_131 . repeat_region 120805 120812 . ? . description=dust scaffold_131 . repeat_region 121440 121463 . ? . description=dust scaffold_131 . repeat_region 123745 123754 . ? . description=dust scaffold_131 ensembl protein_coding_gene 115576 116634 . - . ID=Physo143193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310035;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 115576 116634 . - . ID=Physo143193;Parent=Physo143193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 115576 115759 . - 0 ID=Physo143193;Parent=Physo143193;rank=4 scaffold_131 . exon 115576 115759 . - . ID=Physo143193.4;Parent=Physo143193;constitutive=1;ensembl_phase=2;rank=4 scaffold_131 . CDS 115825 115981 . - 0 ID=Physo143193;Parent=Physo143193;rank=3 scaffold_131 . exon 115825 115981 . - . ID=Physo143193.3;Parent=Physo143193;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_131 . CDS 116041 116504 . - 0 ID=Physo143193;Parent=Physo143193;rank=2 scaffold_131 . exon 116041 116504 . - . ID=Physo143193.2;Parent=Physo143193;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_131 . CDS 116564 116634 . - 0 ID=Physo143193;Parent=Physo143193;rank=1 scaffold_131 . exon 116564 116634 . - . ID=Physo143193.1;Parent=Physo143193;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_131 ensembl protein_coding_gene 120897 123677 . - . ID=Physo143194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310036;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 120897 123677 . - . ID=Physo143194;Parent=Physo143194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 120897 121313 . - 0 ID=Physo143194;Parent=Physo143194;rank=5 scaffold_131 . exon 120897 121313 . - . ID=Physo143194.5;Parent=Physo143194;constitutive=1;rank=5 scaffold_131 . CDS 121482 121658 . - 0 ID=Physo143194;Parent=Physo143194;rank=4 scaffold_131 . exon 121482 121658 . - . ID=Physo143194.4;Parent=Physo143194;constitutive=1;rank=4 scaffold_131 . CDS 121936 122052 . - 0 ID=Physo143194;Parent=Physo143194;rank=3 scaffold_131 . exon 121936 122052 . - . ID=Physo143194.3;Parent=Physo143194;constitutive=1;rank=3 scaffold_131 . CDS 122124 122352 . - 0 ID=Physo143194;Parent=Physo143194;rank=2 scaffold_131 . exon 122124 122352 . - . ID=Physo143194.2;Parent=Physo143194;constitutive=1;ensembl_phase=2;rank=2 scaffold_131 . CDS 122404 123677 . - 0 ID=Physo143194;Parent=Physo143194;rank=1 scaffold_131 . exon 122404 123677 . - . ID=Physo143194.1;Parent=Physo143194;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_131 . repeat_region 128998 129049 . ? . description=trf scaffold_131 . repeat_region 129189 129243 . ? . description=trf scaffold_131 . biological_region 131412 131414 0.999 + . logic_name=eponine scaffold_131 ensembl protein_coding_gene 125554 126519 . - . ID=Physo143195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310037;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 125554 126519 . - . ID=Physo143195;Parent=Physo143195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 125554 125604 . - 0 ID=Physo143195;Parent=Physo143195;rank=2 scaffold_131 . exon 125554 125604 . - . ID=Physo143195.2;Parent=Physo143195;constitutive=1;rank=2 scaffold_131 . CDS 125917 126519 . - 0 ID=Physo143195;Parent=Physo143195;rank=1 scaffold_131 . exon 125917 126519 . - . ID=Physo143195.1;Parent=Physo143195;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 127108 127525 . + . ID=Physo143196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310038;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 127108 127525 . + . ID=Physo143196;Parent=Physo143196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . exon 127108 127525 . + . ID=Physo143196.1;Parent=Physo143196;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_131 . CDS 127109 127477 . + 0 ID=Physo143196;Parent=Physo143196;rank=1 scaffold_131 ensembl protein_coding_gene 128301 128621 . - . ID=Physo143197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310039;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 128301 128621 . - . ID=Physo143197;Parent=Physo143197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 128301 128621 . - 0 ID=Physo143197;Parent=Physo143197;rank=1 scaffold_131 . exon 128301 128621 . - . ID=Physo143197.1;Parent=Physo143197;constitutive=1;rank=1 scaffold_131 ensembl protein_coding_gene 131950 134171 . - . ID=Physo143198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310040;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 131950 134171 . - . ID=Physo143198;Parent=Physo143198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 131950 132666 . - 0 ID=Physo143198;Parent=Physo143198;rank=6 scaffold_131 . exon 131950 132666 . - . ID=Physo143198.6;Parent=Physo143198;constitutive=1;rank=6 scaffold_131 . CDS 132711 132747 . - 0 ID=Physo143198;Parent=Physo143198;rank=5 scaffold_131 . exon 132711 132747 . - . ID=Physo143198.5;Parent=Physo143198;constitutive=1;ensembl_phase=2;rank=5 scaffold_131 . CDS 132820 132960 . - 0 ID=Physo143198;Parent=Physo143198;rank=4 scaffold_131 . exon 132820 132960 . - . ID=Physo143198.4;Parent=Physo143198;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_131 . CDS 133386 133566 . - 0 ID=Physo143198;Parent=Physo143198;rank=3 scaffold_131 . exon 133386 133566 . - . ID=Physo143198.3;Parent=Physo143198;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_131 . CDS 133631 133885 . - 0 ID=Physo143198;Parent=Physo143198;rank=2 scaffold_131 . CDS 133979 134171 . - 0 ID=Physo143198;Parent=Physo143198;rank=1 scaffold_131 . repeat_region 142138 142290 . ? . description=dust scaffold_131 . repeat_region 142513 142528 . ? . description=dust scaffold_131 . repeat_region 142629 142638 . ? . description=dust scaffold_131 . exon 133631 133885 . - . ID=Physo143198.2;Parent=Physo143198;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_131 . exon 133979 134171 . - . ID=Physo143198.1;Parent=Physo143198;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 ensembl protein_coding_gene 137131 141182 . + . ID=Physo143199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310041;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 137131 141182 . + . ID=Physo143199;Parent=Physo143199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 137131 138208 . + 0 ID=Physo143199;Parent=Physo143199;rank=1 scaffold_131 . exon 137131 138208 . + . ID=Physo143199.1;Parent=Physo143199;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 . CDS 138277 141182 . + 0 ID=Physo143199;Parent=Physo143199;rank=2 scaffold_131 . exon 138277 141182 . + . ID=Physo143199.2;Parent=Physo143199;constitutive=1;ensembl_phase=1;rank=2 scaffold_131 . biological_region 143166 143168 0.999 + . logic_name=eponine scaffold_131 . biological_region 143380 143383 0.999 - . logic_name=eponine scaffold_131 . biological_region 148279 148280 0.999 - . logic_name=eponine scaffold_131 . biological_region 148485 148488 0.999 + . logic_name=eponine scaffold_131 ensembl protein_coding_gene 143967 145010 . + . ID=Physo143200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310042;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 143967 145010 . + . ID=Physo143200;Parent=Physo143200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 143967 144869 . + 0 ID=Physo143200;Parent=Physo143200;rank=1 scaffold_131 . exon 143967 145010 . + . ID=Physo143200.1;Parent=Physo143200;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_131 ensembl protein_coding_gene 145536 149800 . + . ID=Physo143201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310043;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 145536 149800 . + . ID=Physo143201;Parent=Physo143201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 145536 146865 . + 0 ID=Physo143201;Parent=Physo143201;rank=1 scaffold_131 . exon 145536 146865 . + . ID=Physo143201.1;Parent=Physo143201;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 . CDS 147717 149800 . + 0 ID=Physo143201;Parent=Physo143201;rank=2 scaffold_131 . exon 147717 149800 . + . ID=Physo143201.2;Parent=Physo143201;constitutive=1;ensembl_phase=1;rank=2 scaffold_131 ensembl protein_coding_gene 149923 152691 . - . ID=Physo143202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310044;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 149923 152691 . - . ID=Physo143202;Parent=Physo143202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 149923 152153 . - 0 ID=Physo143202;Parent=Physo143202;rank=3 scaffold_131 . exon 149923 152153 . - . ID=Physo143202.3;Parent=Physo143202;constitutive=1;ensembl_phase=1;rank=3 scaffold_131 . CDS 152216 152344 . - 0 ID=Physo143202;Parent=Physo143202;rank=2 scaffold_131 . exon 152216 152344 . - . ID=Physo143202.2;Parent=Physo143202;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_131 . CDS 152613 152691 . - 0 ID=Physo143202;Parent=Physo143202;rank=1 scaffold_131 . exon 152613 152691 . - . ID=Physo143202.1;Parent=Physo143202;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_131 . repeat_region 152747 152794 . ? . description=trf scaffold_131 . repeat_region 158210 158217 . ? . description=dust scaffold_131 . repeat_region 159160 159167 . ? . description=dust scaffold_131 . repeat_region 159398 159426 . ? . description=trf scaffold_131 . repeat_region 159494 159501 . ? . description=dust scaffold_131 ensembl protein_coding_gene 153453 157648 . - . ID=Physo143203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310045;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 153453 157648 . - . ID=Physo143203;Parent=Physo143203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . exon 153453 157648 . - . ID=Physo143203.1;Parent=Physo143203;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_131 . CDS 153584 157648 . - 0 ID=Physo143203;Parent=Physo143203;rank=1 scaffold_131 ensembl protein_coding_gene 161408 162181 . + . ID=Physo143204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1310046;logic_name=jgi_physo1_1 scaffold_131 ensembl transcript 161408 162181 . + . ID=Physo143204;Parent=Physo143204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_131 . CDS 161408 162181 . + 0 ID=Physo143204;Parent=Physo143204;rank=1 scaffold_131 . exon 161408 162181 . + . ID=Physo143204.1;Parent=Physo143204;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_139 1 166785 scaffold_139 . repeat_region 1 58 . ? . description=trf scaffold_139 . repeat_region 1 64 . ? . description=dust scaffold_139 . repeat_region 785 795 . ? . description=dust scaffold_139 . repeat_region 1411 1418 . ? . description=dust scaffold_139 . repeat_region 1855 1863 . ? . description=dust scaffold_139 . repeat_region 3986 3993 . ? . description=dust scaffold_139 . repeat_region 4386 4417 . ? . description=trf scaffold_139 . repeat_region 5345 5353 . ? . description=dust scaffold_139 . repeat_region 7503 7541 . ? . description=trf scaffold_139 . repeat_region 7726 7758 . ? . description=dust scaffold_139 . repeat_region 7727 7758 . ? . description=trf scaffold_139 ensembl protein_coding_gene 3485 3931 . + . ID=Physo123793;biotype=protein_coding;external_name=estExt_Genewise1.C_1390001;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 3485 3931 . + . ID=Physo123793;Parent=Physo123793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . exon 3485 3931 . + . ID=Physo123793.1;Parent=Physo123793;constitutive=1;ensembl_phase=-1;rank=1 scaffold_139 . CDS 3746 3931 . + 0 ID=Physo123793;Parent=Physo123793;rank=1 scaffold_139 ensembl protein_coding_gene 12 339 . - . ID=Physo143428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390001;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 12 339 . - . ID=Physo143428;Parent=Physo143428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . exon 12 339 . - . ID=Physo143428.1;Parent=Physo143428;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_139 . CDS 13 339 . - 0 ID=Physo143428;Parent=Physo143428;rank=1 scaffold_139 ensembl protein_coding_gene 7222 7707 . + . ID=Physo143429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390002;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 7222 7707 . + . ID=Physo143429;Parent=Physo143429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 7222 7707 . + 0 ID=Physo143429;Parent=Physo143429;rank=1 scaffold_139 . exon 7222 7707 . + . ID=Physo143429.1;Parent=Physo143429;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 12013 13990 . - . ID=Physo143430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390003;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 12013 13990 . - . ID=Physo143430;Parent=Physo143430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 12013 12086 . - 0 ID=Physo143430;Parent=Physo143430;rank=4 scaffold_139 . exon 12013 12086 . - . ID=Physo143430.4;Parent=Physo143430;constitutive=1;ensembl_phase=1;rank=4 scaffold_139 . CDS 12255 12956 . - 0 ID=Physo143430;Parent=Physo143430;rank=3 scaffold_139 . exon 12255 12956 . - . ID=Physo143430.3;Parent=Physo143430;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_139 . CDS 13257 13702 . - 0 ID=Physo143430;Parent=Physo143430;rank=2 scaffold_139 . exon 13257 13702 . - . ID=Physo143430.2;Parent=Physo143430;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_139 . CDS 13872 13990 . - 0 ID=Physo143430;Parent=Physo143430;rank=1 scaffold_139 . exon 13872 13990 . - . ID=Physo143430.1;Parent=Physo143430;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_139 ensembl protein_coding_gene 14611 16633 . - . ID=Physo143431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390004;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 14611 16633 . - . ID=Physo143431;Parent=Physo143431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 14611 14750 . - 0 ID=Physo143431;Parent=Physo143431;rank=4 scaffold_139 . exon 14611 14750 . - . ID=Physo143431.4;Parent=Physo143431;constitutive=1;ensembl_phase=1;rank=4 scaffold_139 . CDS 14852 16026 . - 0 ID=Physo143431;Parent=Physo143431;rank=3 scaffold_139 . exon 14852 16026 . - . ID=Physo143431.3;Parent=Physo143431;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_139 . CDS 16050 16525 . - 0 ID=Physo143431;Parent=Physo143431;rank=2 scaffold_139 . exon 16050 16525 . - . ID=Physo143431.2;Parent=Physo143431;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_139 . CDS 16595 16633 . - 0 ID=Physo143431;Parent=Physo143431;rank=1 scaffold_139 . exon 16595 16633 . - . ID=Physo143431.1;Parent=Physo143431;constitutive=1;rank=1 scaffold_139 . repeat_region 20832 20839 . ? . description=dust scaffold_139 . biological_region 21743 21746 0.999 + . logic_name=eponine scaffold_139 . biological_region 26748 26754 0.999 + . logic_name=eponine scaffold_139 . biological_region 28111 28111 0.999 + . logic_name=eponine scaffold_139 . biological_region 28137 28142 0.999 - . logic_name=eponine scaffold_139 . biological_region 29118 29121 0.999 - . logic_name=eponine scaffold_139 ensembl protein_coding_gene 21089 22223 . - . ID=Physo143432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390005;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 21089 22223 . - . ID=Physo143432;Parent=Physo143432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 21089 21229 . - 0 ID=Physo143432;Parent=Physo143432;rank=5 scaffold_139 . exon 21089 21229 . - . ID=Physo143432.5;Parent=Physo143432;constitutive=1;rank=5 scaffold_139 . CDS 21321 21396 . - 0 ID=Physo143432;Parent=Physo143432;rank=4 scaffold_139 . exon 21321 21396 . - . ID=Physo143432.4;Parent=Physo143432;constitutive=1;ensembl_phase=2;rank=4 scaffold_139 . CDS 21459 21632 . - 0 ID=Physo143432;Parent=Physo143432;rank=3 scaffold_139 . exon 21459 21632 . - . ID=Physo143432.3;Parent=Physo143432;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_139 . CDS 21693 22022 . - 0 ID=Physo143432;Parent=Physo143432;rank=2 scaffold_139 . exon 21693 22022 . - . ID=Physo143432.2;Parent=Physo143432;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_139 . CDS 22216 22223 . - 0 ID=Physo143432;Parent=Physo143432;rank=1 scaffold_139 . exon 22216 22223 . - . ID=Physo143432.1;Parent=Physo143432;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_139 ensembl protein_coding_gene 27564 28421 . - . ID=Physo143433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390006;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 27564 28421 . - . ID=Physo143433;Parent=Physo143433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 27564 28421 . - 0 ID=Physo143433;Parent=Physo143433;rank=1 scaffold_139 . exon 27564 28421 . - . ID=Physo143433.1;Parent=Physo143433;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 29034 30656 . + . ID=Physo143434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390007;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 29034 30656 . + . ID=Physo143434;Parent=Physo143434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 29034 29570 . + 0 ID=Physo143434;Parent=Physo143434;rank=1 scaffold_139 . exon 29034 29570 . + . ID=Physo143434.1;Parent=Physo143434;constitutive=1;rank=1 scaffold_139 . CDS 29607 30356 . + 0 ID=Physo143434;Parent=Physo143434;rank=2 scaffold_139 . CDS 30387 30656 . + 0 ID=Physo143434;Parent=Physo143434;rank=3 scaffold_139 . exon 29607 30356 . + . ID=Physo143434.2;Parent=Physo143434;constitutive=1;rank=2 scaffold_139 . exon 30387 30656 . + . ID=Physo143434.3;Parent=Physo143434;constitutive=1;rank=3 scaffold_139 ensembl protein_coding_gene 30848 39656 . - . ID=Physo143435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390008;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 30848 39656 . - . ID=Physo143435;Parent=Physo143435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 30848 31710 . - 0 ID=Physo143435;Parent=Physo143435;rank=6 scaffold_139 . exon 30848 31710 . - . ID=Physo143435.6;Parent=Physo143435;constitutive=1;ensembl_phase=1;rank=6 scaffold_139 . CDS 31754 32859 . - 0 ID=Physo143435;Parent=Physo143435;rank=5 scaffold_139 . exon 31754 32859 . - . ID=Physo143435.5;Parent=Physo143435;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_139 . CDS 33119 33615 . - 0 ID=Physo143435;Parent=Physo143435;rank=4 scaffold_139 . exon 33119 33615 . - . ID=Physo143435.4;Parent=Physo143435;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_139 . CDS 33727 35189 . - 0 ID=Physo143435;Parent=Physo143435;rank=3 scaffold_139 . exon 33727 35189 . - . ID=Physo143435.3;Parent=Physo143435;constitutive=1;ensembl_phase=1;rank=3 scaffold_139 . CDS 36500 37922 . - 0 ID=Physo143435;Parent=Physo143435;rank=2 scaffold_139 . exon 36500 37922 . - . ID=Physo143435.2;Parent=Physo143435;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_139 . CDS 38133 39656 . - 0 ID=Physo143435;Parent=Physo143435;rank=1 scaffold_139 . exon 38133 39656 . - . ID=Physo143435.1;Parent=Physo143435;constitutive=1;rank=1 scaffold_139 . biological_region 39671 39675 0.999 - . logic_name=eponine scaffold_139 . biological_region 39699 39702 0.999 - . logic_name=eponine scaffold_139 . repeat_region 39702 39729 . ? . description=trf scaffold_139 . repeat_region 39716 39770 . ? . description=trf scaffold_139 . biological_region 39750 39751 0.999 - . logic_name=eponine scaffold_139 . repeat_region 39855 39905 . ? . description=trf scaffold_139 . biological_region 42810 42814 0.999 - . logic_name=eponine scaffold_139 . biological_region 43313 43315 0.999 + . logic_name=eponine scaffold_139 . biological_region 43514 43515 0.999 + . logic_name=eponine scaffold_139 . biological_region 45825 45827 0.999 - . logic_name=eponine scaffold_139 . biological_region 45842 45845 0.999 - . logic_name=eponine scaffold_139 . biological_region 45985 45992 0.999 - . logic_name=eponine scaffold_139 . biological_region 46006 46009 0.999 - . logic_name=eponine scaffold_139 . biological_region 46442 46446 0.999 + . logic_name=eponine scaffold_139 . biological_region 46535 46545 0.999 - . logic_name=eponine scaffold_139 . repeat_region 46726 46779 . ? . description=trf scaffold_139 . biological_region 48177 48180 0.999 - . logic_name=eponine scaffold_139 . biological_region 48835 48841 0.999 - . logic_name=eponine scaffold_139 . biological_region 48889 48900 0.999 + . logic_name=eponine scaffold_139 . biological_region 48906 48910 0.999 - . logic_name=eponine scaffold_139 . repeat_region 48918 48957 . ? . description=trf scaffold_139 . biological_region 48919 48921 0.999 + . logic_name=eponine scaffold_139 ensembl protein_coding_gene 41130 41399 . + . ID=Physo123802;biotype=protein_coding;external_name=estExt_Genewise1.C_1390010;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 41130 41399 . + . ID=Physo123802;Parent=Physo123802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 41130 41399 . + 0 ID=Physo123802;Parent=Physo123802;rank=1 scaffold_139 . exon 41130 41399 . + . ID=Physo123802.1;Parent=Physo123802;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 41962 43712 . - . ID=Physo143437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390010;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 41962 43712 . - . ID=Physo143437;Parent=Physo143437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 41962 42309 . - 0 ID=Physo143437;Parent=Physo143437;rank=3 scaffold_139 . exon 41962 42309 . - . ID=Physo143437.3;Parent=Physo143437;constitutive=1;rank=3 scaffold_139 . CDS 42382 42396 . - 0 ID=Physo143437;Parent=Physo143437;rank=2 scaffold_139 . exon 42382 42396 . - . ID=Physo143437.2;Parent=Physo143437;constitutive=1;rank=2 scaffold_139 . CDS 42627 43712 . - 0 ID=Physo143437;Parent=Physo143437;rank=1 scaffold_139 . exon 42627 43712 . - . ID=Physo143437.1;Parent=Physo143437;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 44632 45942 . - . ID=Physo143438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390011;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 44632 45942 . - . ID=Physo143438;Parent=Physo143438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 44632 45942 . - 0 ID=Physo143438;Parent=Physo143438;rank=1 scaffold_139 . exon 44632 45942 . - . ID=Physo143438.1;Parent=Physo143438;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 46399 47372 . + . ID=Physo143439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390012;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 46399 47372 . + . ID=Physo143439;Parent=Physo143439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . exon 46399 47372 . + . ID=Physo143439.1;Parent=Physo143439;constitutive=1;ensembl_phase=-1;rank=1 scaffold_139 . CDS 46434 47372 . + 0 ID=Physo143439;Parent=Physo143439;rank=1 scaffold_139 ensembl protein_coding_gene 47485 48984 . - . ID=Physo143440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390013;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 47485 48984 . - . ID=Physo143440;Parent=Physo143440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 47485 48984 . - 0 ID=Physo143440;Parent=Physo143440;rank=1 scaffold_139 . exon 47485 48984 . - . ID=Physo143440.1;Parent=Physo143440;constitutive=1;rank=1 scaffold_139 . repeat_region 51233 51247 . ? . description=dust scaffold_139 . repeat_region 52529 52549 . ? . description=dust scaffold_139 . repeat_region 56967 56974 . ? . description=dust scaffold_139 . repeat_region 57651 57668 . ? . description=dust scaffold_139 ensembl protein_coding_gene 50926 52494 . + . ID=Physo143441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390014;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 50926 52494 . + . ID=Physo143441;Parent=Physo143441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 50926 52494 . + 0 ID=Physo143441;Parent=Physo143441;rank=1 scaffold_139 . exon 50926 52494 . + . ID=Physo143441.1;Parent=Physo143441;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 58401 59139 . + . ID=Physo143442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390015;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 58401 59139 . + . ID=Physo143442;Parent=Physo143442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . exon 58401 58807 . + . ID=Physo143442.1;Parent=Physo143442;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_139 . CDS 58428 58807 . + 0 ID=Physo143442;Parent=Physo143442;rank=1 scaffold_139 . CDS 58878 58992 . + 0 ID=Physo143442;Parent=Physo143442;rank=2 scaffold_139 . CDS 59020 59139 . + 0 ID=Physo143442;Parent=Physo143442;rank=3 scaffold_139 . biological_region 60506 60510 0.999 - . logic_name=eponine scaffold_139 . biological_region 62394 62394 0.999 + . logic_name=eponine scaffold_139 . biological_region 64761 64763 0.999 - . logic_name=eponine scaffold_139 . biological_region 64778 64781 0.999 - . logic_name=eponine scaffold_139 . biological_region 65543 65549 0.999 - . logic_name=eponine scaffold_139 . repeat_region 66275 66317 . ? . description=trf scaffold_139 . biological_region 66399 66405 0.999 + . logic_name=eponine scaffold_139 . biological_region 66516 66519 0.999 + . logic_name=eponine scaffold_139 . repeat_region 68630 68656 . ? . description=trf scaffold_139 ensembl protein_coding_gene 59759 59977 . + . ID=Physo123811;biotype=protein_coding;external_name=estExt_Genewise1.C_1390019;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 59759 59977 . + . ID=Physo123811;Parent=Physo123811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 59759 59977 . + 0 ID=Physo123811;Parent=Physo123811;rank=1 scaffold_139 . exon 59759 59977 . + . ID=Physo123811.1;Parent=Physo123811;constitutive=1;rank=1 scaffold_139 . exon 58878 58992 . + . ID=Physo143442.2;Parent=Physo143442;constitutive=1;ensembl_phase=2;rank=2 scaffold_139 . exon 59020 59139 . + . ID=Physo143442.3;Parent=Physo143442;constitutive=1;rank=3 scaffold_139 ensembl protein_coding_gene 60372 60728 . - . ID=Physo143443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390016;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 60372 60728 . - . ID=Physo143443;Parent=Physo143443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 60372 60728 . - 0 ID=Physo143443;Parent=Physo143443;rank=1 scaffold_139 . exon 60372 60728 . - . ID=Physo143443.1;Parent=Physo143443;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 62874 63305 . - . ID=Physo143444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390017;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 62874 63305 . - . ID=Physo143444;Parent=Physo143444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 62874 63305 . - 0 ID=Physo143444;Parent=Physo143444;rank=1 scaffold_139 . exon 62874 63305 . - . ID=Physo143444.1;Parent=Physo143444;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 63568 64878 . - . ID=Physo143445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390018;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 63568 64878 . - . ID=Physo143445;Parent=Physo143445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 63568 64878 . - 0 ID=Physo143445;Parent=Physo143445;rank=1 scaffold_139 . exon 63568 64878 . - . ID=Physo143445.1;Parent=Physo143445;constitutive=1;rank=1 scaffold_139 . repeat_region 69807 69950 . + . description=(CTG)n scaffold_139 . repeat_region 71100 71107 . ? . description=dust scaffold_139 ensembl protein_coding_gene 73113 78638 . + . ID=Physo143446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390019;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 73113 78638 . + . ID=Physo143446;Parent=Physo143446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 73113 78638 . + 0 ID=Physo143446;Parent=Physo143446;rank=1 scaffold_139 . exon 73113 78638 . + . ID=Physo143446.1;Parent=Physo143446;constitutive=1;rank=1 scaffold_139 . repeat_region 79529 79568 . ? . description=trf scaffold_139 . repeat_region 79557 79585 . ? . description=trf scaffold_139 . biological_region 83311 83313 0.999 + . logic_name=eponine scaffold_139 ensembl protein_coding_gene 79970 81447 . + . ID=Physo143447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390020;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 79970 81447 . + . ID=Physo143447;Parent=Physo143447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 79970 79995 . + 0 ID=Physo143447;Parent=Physo143447;rank=1 scaffold_139 . exon 79970 79995 . + . ID=Physo143447.1;Parent=Physo143447;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_139 . CDS 80303 80327 . + 0 ID=Physo143447;Parent=Physo143447;rank=2 scaffold_139 . exon 80303 80327 . + . ID=Physo143447.2;Parent=Physo143447;constitutive=1;ensembl_phase=2;rank=2 scaffold_139 . CDS 80699 81025 . + 0 ID=Physo143447;Parent=Physo143447;rank=3 scaffold_139 . exon 80699 81025 . + . ID=Physo143447.3;Parent=Physo143447;constitutive=1;rank=3 scaffold_139 . CDS 81340 81447 . + 0 ID=Physo143447;Parent=Physo143447;rank=4 scaffold_139 . exon 81340 81447 . + . ID=Physo143447.4;Parent=Physo143447;constitutive=1;rank=4 scaffold_139 ensembl protein_coding_gene 82983 85342 . + . ID=Physo143448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390021;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 82983 85342 . + . ID=Physo143448;Parent=Physo143448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 82983 83039 . + 0 ID=Physo143448;Parent=Physo143448;rank=1 scaffold_139 . exon 82983 83039 . + . ID=Physo143448.1;Parent=Physo143448;constitutive=1;rank=1 scaffold_139 . CDS 83112 83526 . + 0 ID=Physo143448;Parent=Physo143448;rank=2 scaffold_139 . exon 83112 83526 . + . ID=Physo143448.2;Parent=Physo143448;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_139 . CDS 83569 83654 . + 0 ID=Physo143448;Parent=Physo143448;rank=3 scaffold_139 . exon 83569 83654 . + . ID=Physo143448.3;Parent=Physo143448;constitutive=1;ensembl_phase=1;rank=3 scaffold_139 . CDS 83964 84173 . + 0 ID=Physo143448;Parent=Physo143448;rank=4 scaffold_139 . exon 83964 84173 . + . ID=Physo143448.4;Parent=Physo143448;constitutive=1;rank=4 scaffold_139 . CDS 84194 84385 . + 0 ID=Physo143448;Parent=Physo143448;rank=5 scaffold_139 . exon 84194 84385 . + . ID=Physo143448.5;Parent=Physo143448;constitutive=1;rank=5 scaffold_139 . CDS 84485 85342 . + 0 ID=Physo143448;Parent=Physo143448;rank=6 scaffold_139 . exon 84485 85342 . + . ID=Physo143448.6;Parent=Physo143448;constitutive=1;rank=6 scaffold_139 ensembl protein_coding_gene 90491 90928 . + . ID=Physo143449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390022;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 90491 90928 . + . ID=Physo143449;Parent=Physo143449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 90491 90928 . + 0 ID=Physo143449;Parent=Physo143449;rank=1 scaffold_139 . exon 90491 90928 . + . ID=Physo143449.1;Parent=Physo143449;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 91685 94189 . - . ID=Physo143450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390023;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 91685 94189 . - . ID=Physo143450;Parent=Physo143450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 91685 92325 . - 0 ID=Physo143450;Parent=Physo143450;rank=4 scaffold_139 . exon 91685 92325 . - . ID=Physo143450.4;Parent=Physo143450;constitutive=1;ensembl_phase=1;rank=4 scaffold_139 . CDS 92540 92971 . - 0 ID=Physo143450;Parent=Physo143450;rank=3 scaffold_139 . exon 92540 92971 . - . ID=Physo143450.3;Parent=Physo143450;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_139 . CDS 93012 93218 . - 0 ID=Physo143450;Parent=Physo143450;rank=2 scaffold_139 . exon 93012 93218 . - . ID=Physo143450.2;Parent=Physo143450;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_139 . CDS 93280 94189 . - 0 ID=Physo143450;Parent=Physo143450;rank=1 scaffold_139 . exon 93280 94189 . - . ID=Physo143450.1;Parent=Physo143450;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_139 ensembl protein_coding_gene 97081 97836 . - . ID=Physo143451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390024;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 97081 97836 . - . ID=Physo143451;Parent=Physo143451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 97081 97836 . - 0 ID=Physo143451;Parent=Physo143451;rank=1 scaffold_139 . exon 97081 97836 . - . ID=Physo143451.1;Parent=Physo143451;constitutive=1;rank=1 scaffold_139 . repeat_region 102183 102243 . ? . description=trf scaffold_139 . repeat_region 104772 104789 . ? . description=dust scaffold_139 . biological_region 107598 107600 0.999 + . logic_name=eponine scaffold_139 ensembl protein_coding_gene 101398 103134 . - . ID=Physo143452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390025;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 101398 103134 . - . ID=Physo143452;Parent=Physo143452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 101398 101404 . - 0 ID=Physo143452;Parent=Physo143452;rank=6 scaffold_139 . exon 101398 101404 . - . ID=Physo143452.6;Parent=Physo143452;constitutive=1;ensembl_phase=2;rank=6 scaffold_139 . CDS 101446 101560 . - 0 ID=Physo143452;Parent=Physo143452;rank=5 scaffold_139 . exon 101446 101560 . - . ID=Physo143452.5;Parent=Physo143452;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_139 . CDS 101628 102326 . - 0 ID=Physo143452;Parent=Physo143452;rank=4 scaffold_139 . exon 101628 102326 . - . ID=Physo143452.4;Parent=Physo143452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_139 . CDS 102538 102783 . - 0 ID=Physo143452;Parent=Physo143452;rank=3 scaffold_139 . exon 102538 102783 . - . ID=Physo143452.3;Parent=Physo143452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_139 . CDS 102844 102998 . - 0 ID=Physo143452;Parent=Physo143452;rank=2 scaffold_139 . exon 102844 102998 . - . ID=Physo143452.2;Parent=Physo143452;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_139 . CDS 103058 103134 . - 0 ID=Physo143452;Parent=Physo143452;rank=1 scaffold_139 . exon 103058 103134 . - . ID=Physo143452.1;Parent=Physo143452;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_139 . repeat_region 118073 118096 . ? . description=dust scaffold_139 . repeat_region 119640 119661 . ? . description=dust scaffold_139 . repeat_region 119640 119661 . ? . description=trf scaffold_139 . repeat_region 119912 120006 . ? . description=trf scaffold_139 . biological_region 120368 120372 0.999 - . logic_name=eponine scaffold_139 . biological_region 122337 122343 0.999 + . logic_name=eponine scaffold_139 . repeat_region 122402 122449 . ? . description=trf scaffold_139 . repeat_region 122402 122455 . ? . description=trf scaffold_139 . repeat_region 127089 127112 . ? . description=trf scaffold_139 . repeat_region 127254 127303 . ? . description=dust scaffold_139 ensembl protein_coding_gene 120749 122425 . + . ID=Physo143453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390026;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 120749 122425 . + . ID=Physo143453;Parent=Physo143453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 120749 122425 . + 0 ID=Physo143453;Parent=Physo143453;rank=1 scaffold_139 . exon 120749 122425 . + . ID=Physo143453.1;Parent=Physo143453;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 123911 127203 . + . ID=Physo143454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390027;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 123911 127203 . + . ID=Physo143454;Parent=Physo143454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 123911 123990 . + 0 ID=Physo143454;Parent=Physo143454;rank=1 scaffold_139 . exon 123911 123990 . + . ID=Physo143454.1;Parent=Physo143454;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_139 . CDS 124251 125580 . + 0 ID=Physo143454;Parent=Physo143454;rank=2 scaffold_139 . exon 124251 125580 . + . ID=Physo143454.2;Parent=Physo143454;constitutive=1;ensembl_phase=2;rank=2 scaffold_139 . CDS 125668 125997 . + 0 ID=Physo143454;Parent=Physo143454;rank=3 scaffold_139 . exon 125668 125997 . + . ID=Physo143454.3;Parent=Physo143454;constitutive=1;rank=3 scaffold_139 . CDS 126216 127118 . + 0 ID=Physo143454;Parent=Physo143454;rank=4 scaffold_139 . exon 126216 127118 . + . ID=Physo143454.4;Parent=Physo143454;constitutive=1;rank=4 scaffold_139 . CDS 127174 127203 . + 0 ID=Physo143454;Parent=Physo143454;rank=5 scaffold_139 . exon 127174 127203 . + . ID=Physo143454.5;Parent=Physo143454;constitutive=1;rank=5 scaffold_139 ensembl protein_coding_gene 132786 135709 . + . ID=Physo143455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390028;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 132786 135709 . + . ID=Physo143455;Parent=Physo143455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 132786 134444 . + 0 ID=Physo143455;Parent=Physo143455;rank=1 scaffold_139 . exon 132786 134444 . + . ID=Physo143455.1;Parent=Physo143455;constitutive=1;rank=1 scaffold_139 . CDS 134606 134616 . + 0 ID=Physo143455;Parent=Physo143455;rank=2 scaffold_139 . exon 134606 134616 . + . ID=Physo143455.2;Parent=Physo143455;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_139 . CDS 134656 135709 . + 0 ID=Physo143455;Parent=Physo143455;rank=3 scaffold_139 . exon 134656 135709 . + . ID=Physo143455.3;Parent=Physo143455;constitutive=1;ensembl_phase=2;rank=3 scaffold_139 . repeat_region 141500 141523 . ? . description=trf scaffold_139 . biological_region 141969 141972 0.999 + . logic_name=eponine scaffold_139 . biological_region 144871 144876 0.999 - . logic_name=eponine scaffold_139 . biological_region 144953 144956 0.999 + . logic_name=eponine scaffold_139 . biological_region 145030 145030 0.999 + . logic_name=eponine scaffold_139 . biological_region 145949 145953 0.999 - . logic_name=eponine scaffold_139 . repeat_region 146084 146134 . ? . description=trf scaffold_139 . repeat_region 146694 146770 . ? . description=trf scaffold_139 ensembl protein_coding_gene 137622 140866 . - . ID=Physo143456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390029;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 137622 140866 . - . ID=Physo143456;Parent=Physo143456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 137622 137822 . - 0 ID=Physo143456;Parent=Physo143456;rank=5 scaffold_139 . exon 137622 137822 . - . ID=Physo143456.5;Parent=Physo143456;constitutive=1;rank=5 scaffold_139 . CDS 137876 138549 . - 0 ID=Physo143456;Parent=Physo143456;rank=4 scaffold_139 . exon 137876 138549 . - . ID=Physo143456.4;Parent=Physo143456;constitutive=1;ensembl_phase=1;rank=4 scaffold_139 . CDS 138606 138854 . - 0 ID=Physo143456;Parent=Physo143456;rank=3 scaffold_139 . exon 138606 138854 . - . ID=Physo143456.3;Parent=Physo143456;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_139 . CDS 138899 139495 . - 0 ID=Physo143456;Parent=Physo143456;rank=2 scaffold_139 . exon 138899 139495 . - . ID=Physo143456.2;Parent=Physo143456;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_139 . CDS 139642 140866 . - 0 ID=Physo143456;Parent=Physo143456;rank=1 scaffold_139 . exon 139642 140866 . - . ID=Physo143456.1;Parent=Physo143456;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_139 ensembl protein_coding_gene 143298 146559 . + . ID=Physo143457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390030;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 143298 146559 . + . ID=Physo143457;Parent=Physo143457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 143298 143401 . + 0 ID=Physo143457;Parent=Physo143457;rank=1 scaffold_139 . exon 143298 143401 . + . ID=Physo143457.1;Parent=Physo143457;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_139 . CDS 143422 145432 . + 0 ID=Physo143457;Parent=Physo143457;rank=2 scaffold_139 . exon 143422 145432 . + . ID=Physo143457.2;Parent=Physo143457;constitutive=1;ensembl_phase=2;rank=2 scaffold_139 . CDS 145464 145659 . + 0 ID=Physo143457;Parent=Physo143457;rank=3 scaffold_139 . exon 145464 145659 . + . ID=Physo143457.3;Parent=Physo143457;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_139 . CDS 145843 145953 . + 0 ID=Physo143457;Parent=Physo143457;rank=4 scaffold_139 . exon 145843 145953 . + . ID=Physo143457.4;Parent=Physo143457;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_139 . CDS 145976 146559 . + 0 ID=Physo143457;Parent=Physo143457;rank=5 scaffold_139 . exon 145976 146559 . + . ID=Physo143457.5;Parent=Physo143457;constitutive=1;ensembl_phase=1;rank=5 scaffold_139 . repeat_region 153533 153967 . - . description=GypsyPi-1c_I-int scaffold_139 . repeat_region 154093 155345 . - . description=GypsyPi-1c_I-int scaffold_139 ensembl protein_coding_gene 151459 152973 . + . ID=Physo143458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390031;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 151459 152973 . + . ID=Physo143458;Parent=Physo143458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 151459 151498 . + 0 ID=Physo143458;Parent=Physo143458;rank=1 scaffold_139 . exon 151459 151498 . + . ID=Physo143458.1;Parent=Physo143458;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_139 . CDS 151616 152484 . + 0 ID=Physo143458;Parent=Physo143458;rank=2 scaffold_139 . exon 151616 152484 . + . ID=Physo143458.2;Parent=Physo143458;constitutive=1;ensembl_phase=1;rank=2 scaffold_139 . CDS 152658 152714 . + 0 ID=Physo143458;Parent=Physo143458;rank=3 scaffold_139 . exon 152658 152714 . + . ID=Physo143458.3;Parent=Physo143458;constitutive=1;rank=3 scaffold_139 . CDS 152758 152973 . + 0 ID=Physo143458;Parent=Physo143458;rank=4 scaffold_139 . exon 152758 152973 . + . ID=Physo143458.4;Parent=Physo143458;constitutive=1;rank=4 scaffold_139 ensembl protein_coding_gene 153221 155724 . - . ID=Physo143459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390032;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 153221 155724 . - . ID=Physo143459;Parent=Physo143459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 153221 153227 . - 0 ID=Physo143459;Parent=Physo143459;rank=7 scaffold_139 . exon 153221 153227 . - . ID=Physo143459.7;Parent=Physo143459;constitutive=1;ensembl_phase=2;rank=7 scaffold_139 . CDS 153268 153789 . - 0 ID=Physo143459;Parent=Physo143459;rank=6 scaffold_139 . exon 153268 153789 . - . ID=Physo143459.6;Parent=Physo143459;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_139 . CDS 153954 154366 . - 0 ID=Physo143459;Parent=Physo143459;rank=5 scaffold_139 . exon 153954 154366 . - . ID=Physo143459.5;Parent=Physo143459;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_139 . CDS 154562 154706 . - 0 ID=Physo143459;Parent=Physo143459;rank=4 scaffold_139 . exon 154562 154706 . - . ID=Physo143459.4;Parent=Physo143459;constitutive=1;ensembl_phase=2;rank=4 scaffold_139 . CDS 154792 154893 . - 0 ID=Physo143459;Parent=Physo143459;rank=3 scaffold_139 . exon 154792 154893 . - . ID=Physo143459.3;Parent=Physo143459;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_139 . CDS 154964 154995 . - 0 ID=Physo143459;Parent=Physo143459;rank=2 scaffold_139 . exon 154964 154995 . - . ID=Physo143459.2;Parent=Physo143459;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_139 . CDS 155044 155724 . - 0 ID=Physo143459;Parent=Physo143459;rank=1 scaffold_139 . exon 155044 155724 . - . ID=Physo143459.1;Parent=Physo143459;constitutive=1;rank=1 scaffold_139 . repeat_region 157802 157849 . ? . description=trf scaffold_139 . biological_region 158180 158182 0.999 - . logic_name=eponine scaffold_139 . biological_region 160147 160155 0.999 + . logic_name=eponine scaffold_139 . biological_region 160169 160173 0.999 + . logic_name=eponine scaffold_139 ensembl protein_coding_gene 158560 160704 . + . ID=Physo143460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390033;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 158560 160704 . + . ID=Physo143460;Parent=Physo143460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 158560 160704 . + 0 ID=Physo143460;Parent=Physo143460;rank=1 scaffold_139 . exon 158560 160704 . + . ID=Physo143460.1;Parent=Physo143460;constitutive=1;rank=1 scaffold_139 ensembl protein_coding_gene 161722 165349 . + . ID=Physo143461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390034;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 161722 165349 . + . ID=Physo143461;Parent=Physo143461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 161722 163392 . + 0 ID=Physo143461;Parent=Physo143461;rank=1 scaffold_139 . exon 161722 163392 . + . ID=Physo143461.1;Parent=Physo143461;constitutive=1;rank=1 scaffold_139 . CDS 163480 163737 . + 0 ID=Physo143461;Parent=Physo143461;rank=2 scaffold_139 . exon 163480 163737 . + . ID=Physo143461.2;Parent=Physo143461;constitutive=1;rank=2 scaffold_139 . CDS 163811 164462 . + 0 ID=Physo143461;Parent=Physo143461;rank=3 scaffold_139 . exon 163811 164462 . + . ID=Physo143461.3;Parent=Physo143461;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_139 . CDS 164898 165349 . + 0 ID=Physo143461;Parent=Physo143461;rank=4 scaffold_139 . exon 164898 165349 . + . ID=Physo143461.4;Parent=Physo143461;constitutive=1;ensembl_phase=1;rank=4 scaffold_139 ensembl protein_coding_gene 165494 166727 . - . ID=Physo143462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1390035;logic_name=jgi_physo1_1 scaffold_139 ensembl transcript 165494 166727 . - . ID=Physo143462;Parent=Physo143462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_139 . CDS 165494 166501 . - 0 ID=Physo143462;Parent=Physo143462;rank=1 scaffold_139 . exon 165494 166727 . - . ID=Physo143462.1;Parent=Physo143462;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_129 1 169288 scaffold_129 . repeat_region 1754 1779 . ? . description=trf scaffold_129 . repeat_region 4846 4855 . ? . description=dust scaffold_129 . repeat_region 5740 5754 . ? . description=dust scaffold_129 . biological_region 5902 5902 0.999 + . logic_name=eponine scaffold_129 . repeat_region 7694 7744 . ? . description=trf scaffold_129 . repeat_region 9579 9607 . ? . description=trf scaffold_129 ensembl protein_coding_gene 7867 8372 . - . ID=Physo143091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290001;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 7867 8372 . - . ID=Physo143091;Parent=Physo143091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 7867 7903 . - 0 ID=Physo143091;Parent=Physo143091;rank=3 scaffold_129 . exon 7867 7903 . - . ID=Physo143091.3;Parent=Physo143091;constitutive=1;ensembl_phase=2;rank=3 scaffold_129 . CDS 7934 8081 . - 0 ID=Physo143091;Parent=Physo143091;rank=2 scaffold_129 . exon 7934 8081 . - . ID=Physo143091.2;Parent=Physo143091;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_129 . CDS 8180 8372 . - 0 ID=Physo143091;Parent=Physo143091;rank=1 scaffold_129 . exon 8180 8372 . - . ID=Physo143091.1;Parent=Physo143091;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 . repeat_region 11816 12010 . - . description=Sola3-3_PS scaffold_129 ensembl protein_coding_gene 16038 18788 . + . ID=Physo143092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290002;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 16038 18788 . + . ID=Physo143092;Parent=Physo143092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 16038 18788 . + 0 ID=Physo143092;Parent=Physo143092;rank=1 scaffold_129 . exon 16038 18788 . + . ID=Physo143092.1;Parent=Physo143092;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 19080 21673 . - . ID=Physo143093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290003;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 19080 21673 . - . ID=Physo143093;Parent=Physo143093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 19080 19133 . - 0 ID=Physo143093;Parent=Physo143093;rank=4 scaffold_129 . exon 19080 19133 . - . ID=Physo143093.4;Parent=Physo143093;constitutive=1;rank=4 scaffold_129 . CDS 19213 20799 . - 0 ID=Physo143093;Parent=Physo143093;rank=3 scaffold_129 . exon 19213 20799 . - . ID=Physo143093.3;Parent=Physo143093;constitutive=1;rank=3 scaffold_129 . CDS 20907 21032 . - 0 ID=Physo143093;Parent=Physo143093;rank=2 scaffold_129 . CDS 21342 21584 . - 0 ID=Physo143093;Parent=Physo143093;rank=1 scaffold_129 . repeat_region 21613 21639 . ? . description=trf scaffold_129 . repeat_region 21945 21977 . ? . description=trf scaffold_129 . biological_region 22021 22022 0.999 + . logic_name=eponine scaffold_129 . biological_region 22374 22378 0.999 + . logic_name=eponine scaffold_129 . biological_region 22412 22418 0.999 - . logic_name=eponine scaffold_129 . biological_region 22871 22871 0.999 - . logic_name=eponine scaffold_129 ensembl protein_coding_gene 22033 22500 . + . ID=Physo109536;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1290001;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 22033 22500 . + . ID=Physo109536;Parent=Physo109536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 22033 22500 . + 0 ID=Physo109536;Parent=Physo109536;rank=1 scaffold_129 . exon 22033 22500 . + . ID=Physo109536.1;Parent=Physo109536;constitutive=1;rank=1 scaffold_129 . exon 20907 21032 . - . ID=Physo143093.2;Parent=Physo143093;constitutive=1;rank=2 scaffold_129 . exon 21342 21673 . - . ID=Physo143093.1;Parent=Physo143093;constitutive=1;ensembl_phase=-1;rank=1 scaffold_129 ensembl protein_coding_gene 22654 30248 . - . ID=Physo143095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290005;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 22654 30248 . - . ID=Physo143095;Parent=Physo143095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . exon 22654 30248 . - . ID=Physo143095.1;Parent=Physo143095;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_129 . CDS 22656 30248 . - 0 ID=Physo143095;Parent=Physo143095;rank=1 scaffold_129 . repeat_region 35823 35834 . ? . description=dust scaffold_129 . repeat_region 36164 36171 . ? . description=dust scaffold_129 ensembl protein_coding_gene 34479 35059 . - . ID=Physo143098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290008;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 34479 35059 . - . ID=Physo143098;Parent=Physo143098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . exon 34479 35059 . - . ID=Physo143098.1;Parent=Physo143098;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_129 . CDS 34682 35059 . - 0 ID=Physo143098;Parent=Physo143098;rank=1 scaffold_129 ensembl protein_coding_gene 31135 33934 . - . ID=Physo158691;biotype=protein_coding;external_name=C_scaffold_129000001;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 31135 33934 . - . ID=Physo158691;Parent=Physo158691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 31135 31325 . - 0 ID=Physo158691;Parent=Physo158691;rank=6 scaffold_129 . exon 31135 31325 . - . ID=Physo158691.6;Parent=Physo158691;constitutive=1;ensembl_phase=1;rank=6 scaffold_129 . CDS 31518 31645 . - 0 ID=Physo158691;Parent=Physo158691;rank=5 scaffold_129 . exon 31518 31645 . - . ID=Physo158691.5;Parent=Physo158691;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_129 . CDS 31814 32294 . - 0 ID=Physo158691;Parent=Physo158691;rank=4 scaffold_129 . exon 31814 32294 . - . ID=Physo158691.4;Parent=Physo158691;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_129 . CDS 32375 32534 . - 0 ID=Physo158691;Parent=Physo158691;rank=3 scaffold_129 . exon 32375 32534 . - . ID=Physo158691.3;Parent=Physo158691;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_129 . CDS 33360 33648 . - 0 ID=Physo158691;Parent=Physo158691;rank=2 scaffold_129 . exon 33360 33648 . - . ID=Physo158691.2;Parent=Physo158691;constitutive=1;ensembl_phase=2;rank=2 scaffold_129 . CDS 33735 33934 . - 0 ID=Physo158691;Parent=Physo158691;rank=1 scaffold_129 . exon 33735 33934 . - . ID=Physo158691.1;Parent=Physo158691;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_129 . repeat_region 40879 40942 . ? . description=trf scaffold_129 . biological_region 53901 53902 0.999 + . logic_name=eponine scaffold_129 . biological_region 54085 54090 0.999 + . logic_name=eponine scaffold_129 . biological_region 54180 54184 0.999 + . logic_name=eponine scaffold_129 . biological_region 54232 54236 0.999 + . logic_name=eponine scaffold_129 . biological_region 54237 54242 0.999 - . logic_name=eponine scaffold_129 . biological_region 54275 54275 0.999 + . logic_name=eponine scaffold_129 . biological_region 54289 54296 0.999 - . logic_name=eponine scaffold_129 . biological_region 54379 54384 0.999 - . logic_name=eponine scaffold_129 . biological_region 54402 54407 0.999 - . logic_name=eponine scaffold_129 . biological_region 59182 59186 0.999 - . logic_name=eponine scaffold_129 . biological_region 59565 59568 0.999 + . logic_name=eponine scaffold_129 ensembl snRNA_gene 50417 50555 . - . ID=EPrPSOG00000000235;biotype=snRNA;description=U4 spliceosomal RNA [Source:RFAM%3BAcc:RF00015];external_name=U4;logic_name=ncrna_eg scaffold_129 ensembl snRNA 50417 50555 . - . ID=EPrPSOT00000000235;Parent=EPrPSOG00000000235;biotype=snRNA;logic_name=ncrna_eg scaffold_129 . exon 50417 50555 . - . ID=EPrPSOE00000000235;Parent=EPrPSOT00000000235;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 ensembl protein_coding_gene 53992 60537 . + . ID=Physo143101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290011;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 53992 60537 . + . ID=Physo143101;Parent=Physo143101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 53992 60537 . + 0 ID=Physo143101;Parent=Physo143101;rank=1 scaffold_129 . exon 53992 60537 . + . ID=Physo143101.1;Parent=Physo143101;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 50774 51534 . + . ID=Physo158693;biotype=protein_coding;external_name=C_scaffold_129000003;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 50774 51534 . + . ID=Physo158693;Parent=Physo158693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 50774 50815 . + 0 ID=Physo158693;Parent=Physo158693;rank=1 scaffold_129 . exon 50774 50815 . + . ID=Physo158693.1;Parent=Physo158693;constitutive=1;rank=1 scaffold_129 . CDS 50909 50975 . + 0 ID=Physo158693;Parent=Physo158693;rank=2 scaffold_129 . exon 50909 50975 . + . ID=Physo158693.2;Parent=Physo158693;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_129 . CDS 51062 51114 . + 0 ID=Physo158693;Parent=Physo158693;rank=3 scaffold_129 . exon 51062 51114 . + . ID=Physo158693.3;Parent=Physo158693;constitutive=1;ensembl_phase=1;rank=3 scaffold_129 . CDS 51199 51398 . + 0 ID=Physo158693;Parent=Physo158693;rank=4 scaffold_129 . exon 51199 51398 . + . ID=Physo158693.4;Parent=Physo158693;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_129 . CDS 51471 51534 . + 0 ID=Physo158693;Parent=Physo158693;rank=5 scaffold_129 . exon 51471 51534 . + . ID=Physo158693.5;Parent=Physo158693;constitutive=1;ensembl_phase=2;rank=5 scaffold_129 ensembl protein_coding_gene 52453 53516 . - . ID=Physo158694;biotype=protein_coding;external_name=C_scaffold_129000004;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 52453 53516 . - . ID=Physo158694;Parent=Physo158694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 52453 52667 . - 0 ID=Physo158694;Parent=Physo158694;rank=4 scaffold_129 . exon 52453 52667 . - . ID=Physo158694.4;Parent=Physo158694;constitutive=1;ensembl_phase=1;rank=4 scaffold_129 . CDS 52749 52982 . - 0 ID=Physo158694;Parent=Physo158694;rank=3 scaffold_129 . exon 52749 52982 . - . ID=Physo158694.3;Parent=Physo158694;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_129 . CDS 53048 53200 . - 0 ID=Physo158694;Parent=Physo158694;rank=2 scaffold_129 . exon 53048 53200 . - . ID=Physo158694.2;Parent=Physo158694;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_129 . CDS 53288 53516 . - 0 ID=Physo158694;Parent=Physo158694;rank=1 scaffold_129 . exon 53288 53516 . - . ID=Physo158694.1;Parent=Physo158694;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 ensembl protein_coding_gene 61355 61870 . - . ID=Physo143102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290012;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 61355 61870 . - . ID=Physo143102;Parent=Physo143102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . exon 61355 61789 . - . ID=Physo143102.2;Parent=Physo143102;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_129 . CDS 61373 61789 . - 0 ID=Physo143102;Parent=Physo143102;rank=2 scaffold_129 . CDS 61860 61868 . - 0 ID=Physo143102;Parent=Physo143102;rank=1 scaffold_129 . exon 61860 61870 . - . ID=Physo143102.1;Parent=Physo143102;constitutive=1;ensembl_phase=-1;rank=1 scaffold_129 ensembl protein_coding_gene 62509 63432 . + . ID=Physo143103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290013;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 62509 63432 . + . ID=Physo143103;Parent=Physo143103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 62509 63432 . + 0 ID=Physo143103;Parent=Physo143103;rank=1 scaffold_129 . exon 62509 63432 . + . ID=Physo143103.1;Parent=Physo143103;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 64846 72162 . - . ID=Physo143104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290014;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 64846 72162 . - . ID=Physo143104;Parent=Physo143104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 64846 66551 . - 0 ID=Physo143104;Parent=Physo143104;rank=5 scaffold_129 . exon 64846 66551 . - . ID=Physo143104.5;Parent=Physo143104;constitutive=1;ensembl_phase=1;rank=5 scaffold_129 . CDS 66603 66864 . - 0 ID=Physo143104;Parent=Physo143104;rank=4 scaffold_129 . exon 66603 66864 . - . ID=Physo143104.4;Parent=Physo143104;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_129 . CDS 67193 71266 . - 0 ID=Physo143104;Parent=Physo143104;rank=3 scaffold_129 . exon 67193 71266 . - . ID=Physo143104.3;Parent=Physo143104;constitutive=1;rank=3 scaffold_129 . CDS 71392 71761 . - 0 ID=Physo143104;Parent=Physo143104;rank=2 scaffold_129 . CDS 72158 72162 . - 0 ID=Physo143104;Parent=Physo143104;rank=1 scaffold_129 . biological_region 70314 70318 0.999 + . logic_name=eponine scaffold_129 . biological_region 70388 70392 0.999 + . logic_name=eponine scaffold_129 . biological_region 70425 70429 0.999 - . logic_name=eponine scaffold_129 . biological_region 70443 70448 0.999 + . logic_name=eponine scaffold_129 . biological_region 70794 70796 0.999 - . logic_name=eponine scaffold_129 . biological_region 71609 71610 0.999 + . logic_name=eponine scaffold_129 . biological_region 72219 72223 0.999 - . logic_name=eponine scaffold_129 . biological_region 72402 72403 0.999 - . logic_name=eponine scaffold_129 . biological_region 72454 72460 0.999 + . logic_name=eponine scaffold_129 . biological_region 72480 72480 0.999 + . logic_name=eponine scaffold_129 . biological_region 72486 72492 0.999 - . logic_name=eponine scaffold_129 . biological_region 72561 72566 0.999 - . logic_name=eponine scaffold_129 . biological_region 72584 72591 0.999 - . logic_name=eponine scaffold_129 . biological_region 72616 72623 0.999 - . logic_name=eponine scaffold_129 . biological_region 72617 72621 0.999 + . logic_name=eponine scaffold_129 . biological_region 72703 72709 0.999 + . logic_name=eponine scaffold_129 . biological_region 73700 73703 0.999 - . logic_name=eponine scaffold_129 . biological_region 73708 73713 0.999 - . logic_name=eponine scaffold_129 . biological_region 73805 73810 0.999 - . logic_name=eponine scaffold_129 . biological_region 73863 73865 0.999 + . logic_name=eponine scaffold_129 . biological_region 73999 74004 0.999 + . logic_name=eponine scaffold_129 . biological_region 74636 74639 0.999 - . logic_name=eponine scaffold_129 . biological_region 74695 74697 0.999 + . logic_name=eponine scaffold_129 . biological_region 75199 75199 0.999 - . logic_name=eponine scaffold_129 . biological_region 76617 76619 0.999 - . logic_name=eponine scaffold_129 . biological_region 77191 77195 0.999 - . logic_name=eponine scaffold_129 . biological_region 77214 77218 0.999 - . logic_name=eponine scaffold_129 . biological_region 77268 77275 0.999 + . logic_name=eponine scaffold_129 . biological_region 77396 77398 0.999 + . logic_name=eponine scaffold_129 . biological_region 77403 77408 0.999 - . logic_name=eponine scaffold_129 . biological_region 78403 78407 0.999 + . logic_name=eponine scaffold_129 . biological_region 79151 79158 0.999 - . logic_name=eponine scaffold_129 . exon 71392 71761 . - . ID=Physo143104.2;Parent=Physo143104;constitutive=1;ensembl_phase=2;rank=2 scaffold_129 . exon 72158 72162 . - . ID=Physo143104.1;Parent=Physo143104;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_129 ensembl protein_coding_gene 73565 75331 . + . ID=Physo143105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290015;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 73565 75331 . + . ID=Physo143105;Parent=Physo143105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 73565 75331 . + 0 ID=Physo143105;Parent=Physo143105;rank=1 scaffold_129 . exon 73565 75331 . + . ID=Physo143105.1;Parent=Physo143105;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 75579 83105 . - . ID=Physo143106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290016;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 75579 83105 . - . ID=Physo143106;Parent=Physo143106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 75579 82047 . - 0 ID=Physo143106;Parent=Physo143106;rank=4 scaffold_129 . exon 75579 82047 . - . ID=Physo143106.4;Parent=Physo143106;constitutive=1;ensembl_phase=2;rank=4 scaffold_129 . CDS 82124 82203 . - 0 ID=Physo143106;Parent=Physo143106;rank=3 scaffold_129 . CDS 82281 82517 . - 0 ID=Physo143106;Parent=Physo143106;rank=2 scaffold_129 . CDS 82737 83105 . - 0 ID=Physo143106;Parent=Physo143106;rank=1 scaffold_129 . repeat_region 80208 80298 . ? . description=dust scaffold_129 . repeat_region 86132 86142 . ? . description=dust scaffold_129 . repeat_region 88149 88157 . ? . description=dust scaffold_129 . repeat_region 89512 89532 . ? . description=dust scaffold_129 . exon 82124 82203 . - . ID=Physo143106.3;Parent=Physo143106;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_129 . exon 82281 82517 . - . ID=Physo143106.2;Parent=Physo143106;constitutive=1;rank=2 scaffold_129 . exon 82737 83105 . - . ID=Physo143106.1;Parent=Physo143106;constitutive=1;rank=1 scaffold_129 . repeat_region 93876 94004 . ? . description=trf scaffold_129 ensembl protein_coding_gene 90097 91530 . + . ID=Physo109537;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1290002;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 90097 91530 . + . ID=Physo109537;Parent=Physo109537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 90097 90191 . + 0 ID=Physo109537;Parent=Physo109537;rank=1 scaffold_129 . exon 90097 90191 . + . ID=Physo109537.1;Parent=Physo109537;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_129 . CDS 90240 90273 . + 0 ID=Physo109537;Parent=Physo109537;rank=2 scaffold_129 . exon 90240 90273 . + . ID=Physo109537.2;Parent=Physo109537;constitutive=1;ensembl_phase=2;rank=2 scaffold_129 . CDS 90342 90605 . + 0 ID=Physo109537;Parent=Physo109537;rank=3 scaffold_129 . exon 90342 90605 . + . ID=Physo109537.3;Parent=Physo109537;constitutive=1;rank=3 scaffold_129 . CDS 90703 91530 . + 0 ID=Physo109537;Parent=Physo109537;rank=4 scaffold_129 . exon 90703 91530 . + . ID=Physo109537.4;Parent=Physo109537;constitutive=1;rank=4 scaffold_129 ensembl pseudogene 97085 97686 . - . ID=Physo123502;biotype=pseudogene;external_name=estExt_Genewise1.C_1290016;logic_name=jgi_physo1_1 scaffold_129 ensembl pseudogene 97085 97686 . - . ID=Physo123502;Parent=Physo123502;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_129 . exon 97085 97686 . - . ID=Physo123502.1;Parent=Physo123502;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_129 ensembl protein_coding_gene 93844 94266 . - . ID=Physo143108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290018;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 93844 94266 . - . ID=Physo143108;Parent=Physo143108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 93844 94028 . - 0 ID=Physo143108;Parent=Physo143108;rank=2 scaffold_129 . exon 93844 94028 . - . ID=Physo143108.2;Parent=Physo143108;constitutive=1;ensembl_phase=1;rank=2 scaffold_129 . CDS 94146 94266 . - 0 ID=Physo143108;Parent=Physo143108;rank=1 scaffold_129 . exon 94146 94266 . - . ID=Physo143108.1;Parent=Physo143108;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 ensembl protein_coding_gene 95808 96712 . + . ID=Physo143109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290019;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 95808 96712 . + . ID=Physo143109;Parent=Physo143109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 95808 96260 . + 0 ID=Physo143109;Parent=Physo143109;rank=1 scaffold_129 . exon 95808 96260 . + . ID=Physo143109.1;Parent=Physo143109;constitutive=1;rank=1 scaffold_129 . CDS 96401 96712 . + 0 ID=Physo143109;Parent=Physo143109;rank=2 scaffold_129 . exon 96401 96712 . + . ID=Physo143109.2;Parent=Physo143109;constitutive=1;rank=2 scaffold_129 . biological_region 101668 101670 0.999 - . logic_name=eponine scaffold_129 . biological_region 104380 104384 0.999 + . logic_name=eponine scaffold_129 . biological_region 105382 105383 0.999 - . logic_name=eponine scaffold_129 . biological_region 105443 105443 0.999 - . logic_name=eponine scaffold_129 . repeat_region 106089 106107 . ? . description=dust scaffold_129 . repeat_region 107007 107127 . - . description=Gypsy-2-LTR_PI scaffold_129 . biological_region 107537 107540 0.999 - . logic_name=eponine scaffold_129 . biological_region 107594 107595 0.999 + . logic_name=eponine scaffold_129 . repeat_region 107745 112467 . - . description=Gypsy-2-I_PI-int scaffold_129 ensembl protein_coding_gene 109176 110027 . - . ID=Physo109538;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1290003;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 109176 110027 . - . ID=Physo109538;Parent=Physo109538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 109176 110027 . - 0 ID=Physo109538;Parent=Physo109538;rank=1 scaffold_129 . exon 109176 110027 . - . ID=Physo109538.1;Parent=Physo109538;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 99788 100485 . - . ID=Physo143110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290020;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 99788 100485 . - . ID=Physo143110;Parent=Physo143110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 99788 99910 . - 0 ID=Physo143110;Parent=Physo143110;rank=2 scaffold_129 . exon 99788 99910 . - . ID=Physo143110.2;Parent=Physo143110;constitutive=1;rank=2 scaffold_129 . CDS 99949 100485 . - 0 ID=Physo143110;Parent=Physo143110;rank=1 scaffold_129 . exon 99949 100485 . - . ID=Physo143110.1;Parent=Physo143110;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 104042 105613 . - . ID=Physo143111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290021;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 104042 105613 . - . ID=Physo143111;Parent=Physo143111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 104042 105613 . - 0 ID=Physo143111;Parent=Physo143111;rank=1 scaffold_129 . exon 104042 105613 . - . ID=Physo143111.1;Parent=Physo143111;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 110491 112423 . - . ID=Physo143113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290023;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 110491 112423 . - . ID=Physo143113;Parent=Physo143113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 110491 111550 . - 0 ID=Physo143113;Parent=Physo143113;rank=3 scaffold_129 . exon 110491 111550 . - . ID=Physo143113.3;Parent=Physo143113;constitutive=1;ensembl_phase=2;rank=3 scaffold_129 . CDS 111673 112228 . - 0 ID=Physo143113;Parent=Physo143113;rank=2 scaffold_129 . exon 111673 112228 . - . ID=Physo143113.2;Parent=Physo143113;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_129 . CDS 112315 112423 . - 0 ID=Physo143113;Parent=Physo143113;rank=1 scaffold_129 . exon 112315 112423 . - . ID=Physo143113.1;Parent=Physo143113;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 ensembl protein_coding_gene 118589 120429 . + . ID=Physo143114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290024;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 118589 120429 . + . ID=Physo143114;Parent=Physo143114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 118589 118790 . + 0 ID=Physo143114;Parent=Physo143114;rank=1 scaffold_129 . exon 118589 118790 . + . ID=Physo143114.1;Parent=Physo143114;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 . CDS 119252 120429 . + 0 ID=Physo143114;Parent=Physo143114;rank=2 scaffold_129 . exon 119252 120429 . + . ID=Physo143114.2;Parent=Physo143114;constitutive=1;ensembl_phase=1;rank=2 scaffold_129 . repeat_region 120766 120838 . ? . description=trf scaffold_129 . repeat_region 121539 121638 . ? . description=trf scaffold_129 . repeat_region 121547 121644 . ? . description=trf scaffold_129 . biological_region 123738 123742 0.999 + . logic_name=eponine scaffold_129 . biological_region 124399 124399 0.999 + . logic_name=eponine scaffold_129 . repeat_region 124722 141075 . ? . description=dust scaffold_129 ensembl tRNA_gene 122755 122824 . - . ID=EPrPSOG00000000029;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_129 ensembl transcript 122755 122824 . - . ID=EPrPSOT00000000029;Parent=EPrPSOG00000000029;biotype=tRNA;logic_name=ncrna_eg scaffold_129 . exon 122755 122824 . - . ID=EPrPSOE00000000029;Parent=EPrPSOT00000000029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 . repeat_region 124722 141075 . ? . description=dust scaffold_129 . repeat_region 141076 149131 . ? . description=dust scaffold_129 . biological_region 149563 149566 0.999 - . logic_name=eponine scaffold_129 . repeat_region 153106 153148 . ? . description=trf scaffold_129 ensembl protein_coding_gene 153500 154143 . - . ID=Physo109539;biotype=protein_coding;description=Elicitin proteinElicitin-like protein SOL3A [Source:UniProtKB/TrEMBL%3BAcc:Q84UD5];external_name=SOJY;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 153500 154143 . - . ID=Physo109539;Parent=Physo109539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . exon 153500 154143 . - . ID=Physo109539.1;Parent=Physo109539;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_129 . CDS 153591 154115 . - 0 ID=Physo109539;Parent=Physo109539;rank=1 scaffold_129 ensembl protein_coding_gene 154693 155424 . - . ID=Physo143116;biotype=protein_coding;description=Elicitin-like protein SOL11F [Source:UniProtKB/TrEMBL%3BAcc:Q2N073];external_name=estExt_fgenesh1_pg.C_1290026;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 154693 155424 . - . ID=Physo143116;Parent=Physo143116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 154693 155424 . - 0 ID=Physo143116;Parent=Physo143116;rank=1 scaffold_129 . exon 154693 155424 . - . ID=Physo143116.1;Parent=Physo143116;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 156190 157127 . + . ID=Physo143117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290027;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 156190 157127 . + . ID=Physo143117;Parent=Physo143117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . exon 156190 157127 . + . ID=Physo143117.1;Parent=Physo143117;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_129 . CDS 156226 157023 . + 0 ID=Physo143117;Parent=Physo143117;rank=1 scaffold_129 ensembl protein_coding_gene 157341 157806 . + . ID=Physo143118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290028;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 157341 157806 . + . ID=Physo143118;Parent=Physo143118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 157341 157469 . + 0 ID=Physo143118;Parent=Physo143118;rank=1 scaffold_129 . exon 157341 157469 . + . ID=Physo143118.1;Parent=Physo143118;constitutive=1;rank=1 scaffold_129 . CDS 157528 157806 . + 0 ID=Physo143118;Parent=Physo143118;rank=2 scaffold_129 . exon 157528 157806 . + . ID=Physo143118.2;Parent=Physo143118;constitutive=1;rank=2 scaffold_129 . repeat_region 168206 168245 . ? . description=dust scaffold_129 . repeat_region 168206 168269 . + . description=(TCG)n scaffold_129 ensembl protein_coding_gene 159917 161071 . + . ID=Physo143119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290029;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 159917 161071 . + . ID=Physo143119;Parent=Physo143119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 159917 160965 . + 0 ID=Physo143119;Parent=Physo143119;rank=1 scaffold_129 . exon 159917 160965 . + . ID=Physo143119.1;Parent=Physo143119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_129 . CDS 161044 161071 . + 0 ID=Physo143119;Parent=Physo143119;rank=2 scaffold_129 . exon 161044 161071 . + . ID=Physo143119.2;Parent=Physo143119;constitutive=1;ensembl_phase=2;rank=2 scaffold_129 ensembl protein_coding_gene 163911 165215 . + . ID=Physo143121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290031;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 163911 165215 . + . ID=Physo143121;Parent=Physo143121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 163911 165215 . + 0 ID=Physo143121;Parent=Physo143121;rank=1 scaffold_129 . exon 163911 165215 . + . ID=Physo143121.1;Parent=Physo143121;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 165608 166228 . + . ID=Physo143122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290032;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 165608 166228 . + . ID=Physo143122;Parent=Physo143122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 165608 166189 . + 0 ID=Physo143122;Parent=Physo143122;rank=1 scaffold_129 . exon 165608 166228 . + . ID=Physo143122.1;Parent=Physo143122;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_129 ensembl protein_coding_gene 166749 168788 . + . ID=Physo143123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1290033;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 166749 168788 . + . ID=Physo143123;Parent=Physo143123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 166749 168788 . + 0 ID=Physo143123;Parent=Physo143123;rank=1 scaffold_129 . exon 166749 168788 . + . ID=Physo143123.1;Parent=Physo143123;constitutive=1;rank=1 scaffold_129 ensembl protein_coding_gene 162241 163472 . + . ID=Physo158701;biotype=protein_coding;external_name=C_scaffold_129000011;logic_name=jgi_physo1_1 scaffold_129 ensembl transcript 162241 163472 . + . ID=Physo158701;Parent=Physo158701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_129 . CDS 162241 162490 . + 0 ID=Physo158701;Parent=Physo158701;rank=1 scaffold_129 . exon 162241 162490 . + . ID=Physo158701.1;Parent=Physo158701;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_129 . CDS 162617 162985 . + 0 ID=Physo158701;Parent=Physo158701;rank=2 scaffold_129 . exon 162617 162985 . + . ID=Physo158701.2;Parent=Physo158701;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_129 . CDS 163058 163170 . + 0 ID=Physo158701;Parent=Physo158701;rank=3 scaffold_129 . exon 163058 163170 . + . ID=Physo158701.3;Parent=Physo158701;constitutive=1;ensembl_phase=1;rank=3 scaffold_129 . CDS 163266 163472 . + 0 ID=Physo158701;Parent=Physo158701;rank=4 scaffold_129 . exon 163266 163472 . + . ID=Physo158701.4;Parent=Physo158701;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_128 1 171265 scaffold_128 . biological_region 3124 3128 0.999 + . logic_name=eponine scaffold_128 . repeat_region 3274 3313 . ? . description=trf scaffold_128 . repeat_region 3274 3321 . ? . description=dust scaffold_128 . repeat_region 3274 3337 . + . description=(TCG)n scaffold_128 . repeat_region 3281 3337 . ? . description=trf scaffold_128 . repeat_region 4225 4276 . ? . description=trf scaffold_128 . biological_region 9461 9469 0.999 + . logic_name=eponine scaffold_128 . biological_region 9505 9509 0.999 - . logic_name=eponine scaffold_128 ensembl protein_coding_gene 7460 8299 . + . ID=Physo109532;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1280001;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 7460 8299 . + . ID=Physo109532;Parent=Physo109532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 7460 8299 . + 0 ID=Physo109532;Parent=Physo109532;rank=1 scaffold_128 . exon 7460 8299 . + . ID=Physo109532.1;Parent=Physo109532;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 676 1296 . + . ID=Physo143047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280001;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 676 1296 . + . ID=Physo143047;Parent=Physo143047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 676 1257 . + 0 ID=Physo143047;Parent=Physo143047;rank=1 scaffold_128 . exon 676 1296 . + . ID=Physo143047.1;Parent=Physo143047;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_128 ensembl protein_coding_gene 1817 3856 . + . ID=Physo143048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280002;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 1817 3856 . + . ID=Physo143048;Parent=Physo143048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 1817 3856 . + 0 ID=Physo143048;Parent=Physo143048;rank=1 scaffold_128 . exon 1817 3856 . + . ID=Physo143048.1;Parent=Physo143048;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 4478 7342 . + . ID=Physo143049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280003;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 4478 7342 . + . ID=Physo143049;Parent=Physo143049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 4478 7342 . + 0 ID=Physo143049;Parent=Physo143049;rank=1 scaffold_128 . exon 4478 7342 . + . ID=Physo143049.1;Parent=Physo143049;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 13294 15302 . - . ID=Physo143051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280005;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 13294 15302 . - . ID=Physo143051;Parent=Physo143051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . exon 13294 13797 . - . ID=Physo143051.4;Parent=Physo143051;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_128 . CDS 13344 13797 . - 0 ID=Physo143051;Parent=Physo143051;rank=4 scaffold_128 . CDS 14102 14324 . - 0 ID=Physo143051;Parent=Physo143051;rank=3 scaffold_128 . exon 14102 14324 . - . ID=Physo143051.3;Parent=Physo143051;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_128 . CDS 14389 14497 . - 0 ID=Physo143051;Parent=Physo143051;rank=2 scaffold_128 . exon 14389 14497 . - . ID=Physo143051.2;Parent=Physo143051;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_128 . CDS 14566 15180 . - 0 ID=Physo143051;Parent=Physo143051;rank=1 scaffold_128 . exon 14566 15302 . - . ID=Physo143051.1;Parent=Physo143051;constitutive=1;ensembl_phase=-1;rank=1 scaffold_128 ensembl protein_coding_gene 15534 16828 . + . ID=Physo143052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280006;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 15534 16828 . + . ID=Physo143052;Parent=Physo143052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 15534 16060 . + 0 ID=Physo143052;Parent=Physo143052;rank=1 scaffold_128 . exon 15534 16060 . + . ID=Physo143052.1;Parent=Physo143052;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . CDS 16081 16828 . + 0 ID=Physo143052;Parent=Physo143052;rank=2 scaffold_128 . exon 16081 16828 . + . ID=Physo143052.2;Parent=Physo143052;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 ensembl protein_coding_gene 17534 18214 . + . ID=Physo143053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280007;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 17534 18214 . + . ID=Physo143053;Parent=Physo143053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 17534 18214 . + 0 ID=Physo143053;Parent=Physo143053;rank=1 scaffold_128 . exon 17534 18214 . + . ID=Physo143053.1;Parent=Physo143053;constitutive=1;rank=1 scaffold_128 . repeat_region 20470 20482 . ? . description=dust scaffold_128 . biological_region 20552 20556 0.999 - . logic_name=eponine scaffold_128 . biological_region 20604 20605 0.999 - . logic_name=eponine scaffold_128 . biological_region 20682 20687 0.999 + . logic_name=eponine scaffold_128 . biological_region 20783 20790 0.999 - . logic_name=eponine scaffold_128 . biological_region 22503 22504 0.999 - . logic_name=eponine scaffold_128 . biological_region 27434 27435 0.999 + . logic_name=eponine scaffold_128 . biological_region 27700 27702 0.999 + . logic_name=eponine scaffold_128 . repeat_region 28494 28504 . ? . description=dust scaffold_128 ensembl protein_coding_gene 20486 27919 . + . ID=Physo143054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280008;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 20486 27919 . + . ID=Physo143054;Parent=Physo143054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 20486 27853 . + 0 ID=Physo143054;Parent=Physo143054;rank=1 scaffold_128 . exon 20486 27919 . + . ID=Physo143054.1;Parent=Physo143054;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_128 . repeat_region 36754 36777 . ? . description=trf scaffold_128 ensembl protein_coding_gene 29032 30051 . + . ID=Physo143055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280009;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 29032 30051 . + . ID=Physo143055;Parent=Physo143055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . exon 29032 30051 . + . ID=Physo143055.1;Parent=Physo143055;constitutive=1;ensembl_phase=-1;rank=1 scaffold_128 . CDS 29053 30051 . + 0 ID=Physo143055;Parent=Physo143055;rank=1 scaffold_128 ensembl protein_coding_gene 30641 31699 . + . ID=Physo143056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280010;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 30641 31699 . + . ID=Physo143056;Parent=Physo143056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 30641 31699 . + 0 ID=Physo143056;Parent=Physo143056;rank=1 scaffold_128 . exon 30641 31699 . + . ID=Physo143056.1;Parent=Physo143056;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 32700 33494 . - . ID=Physo143057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280011;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 32700 33494 . - . ID=Physo143057;Parent=Physo143057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 32700 33494 . - 0 ID=Physo143057;Parent=Physo143057;rank=1 scaffold_128 . exon 32700 33494 . - . ID=Physo143057.1;Parent=Physo143057;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 36484 38371 . + . ID=Physo158685;biotype=protein_coding;external_name=C_scaffold_128000001;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 36484 38371 . + . ID=Physo158685;Parent=Physo158685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 36484 36725 . + 0 ID=Physo158685;Parent=Physo158685;rank=1 scaffold_128 . exon 36484 36725 . + . ID=Physo158685.1;Parent=Physo158685;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . CDS 36847 37624 . + 0 ID=Physo158685;Parent=Physo158685;rank=2 scaffold_128 . exon 36847 37624 . + . ID=Physo158685.2;Parent=Physo158685;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 37712 38037 . + 0 ID=Physo158685;Parent=Physo158685;rank=3 scaffold_128 . exon 37712 38037 . + . ID=Physo158685.3;Parent=Physo158685;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_128 . CDS 38117 38191 . + 0 ID=Physo158685;Parent=Physo158685;rank=4 scaffold_128 . CDS 38278 38371 . + 0 ID=Physo158685;Parent=Physo158685;rank=5 scaffold_128 . repeat_region 38851 38859 . ? . description=dust scaffold_128 . repeat_region 41335 41395 . ? . description=dust scaffold_128 . biological_region 42097 42098 0.999 + . logic_name=eponine scaffold_128 . repeat_region 43323 43377 . ? . description=dust scaffold_128 ensembl protein_coding_gene 40173 42197 . - . ID=Physo143059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280013;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 40173 42197 . - . ID=Physo143059;Parent=Physo143059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . exon 40173 40292 . - . ID=Physo143059.2;Parent=Physo143059;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_128 . CDS 40270 40292 . - 0 ID=Physo143059;Parent=Physo143059;rank=2 scaffold_128 . CDS 40373 42197 . - 0 ID=Physo143059;Parent=Physo143059;rank=1 scaffold_128 . exon 40373 42197 . - . ID=Physo143059.1;Parent=Physo143059;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 ensembl protein_coding_gene 43085 44743 . - . ID=Physo143060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280014;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 43085 44743 . - . ID=Physo143060;Parent=Physo143060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 43085 43319 . - 0 ID=Physo143060;Parent=Physo143060;rank=2 scaffold_128 . exon 43085 43319 . - . ID=Physo143060.2;Parent=Physo143060;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 43464 44743 . - 0 ID=Physo143060;Parent=Physo143060;rank=1 scaffold_128 . exon 43464 44743 . - . ID=Physo143060.1;Parent=Physo143060;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . exon 38117 38191 . + . ID=Physo158685.4;Parent=Physo158685;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_128 . exon 38278 38371 . + . ID=Physo158685.5;Parent=Physo158685;constitutive=1;ensembl_phase=2;rank=5 scaffold_128 . repeat_region 52921 52940 . ? . description=trf scaffold_128 . repeat_region 54525 54632 . + . description=(CAG)n scaffold_128 . repeat_region 55675 55731 . ? . description=trf scaffold_128 . repeat_region 55682 55749 . ? . description=trf scaffold_128 ensembl protein_coding_gene 51660 53319 . - . ID=Physo143062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280016;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 51660 53319 . - . ID=Physo143062;Parent=Physo143062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 51660 52300 . - 0 ID=Physo143062;Parent=Physo143062;rank=5 scaffold_128 . exon 51660 52300 . - . ID=Physo143062.5;Parent=Physo143062;constitutive=1;ensembl_phase=1;rank=5 scaffold_128 . CDS 52362 52441 . - 0 ID=Physo143062;Parent=Physo143062;rank=4 scaffold_128 . exon 52362 52441 . - . ID=Physo143062.4;Parent=Physo143062;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_128 . CDS 52520 52673 . - 0 ID=Physo143062;Parent=Physo143062;rank=3 scaffold_128 . exon 52520 52673 . - . ID=Physo143062.3;Parent=Physo143062;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_128 . CDS 52751 52999 . - 0 ID=Physo143062;Parent=Physo143062;rank=2 scaffold_128 . exon 52751 52999 . - . ID=Physo143062.2;Parent=Physo143062;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_128 . CDS 53070 53319 . - 0 ID=Physo143062;Parent=Physo143062;rank=1 scaffold_128 . exon 53070 53319 . - . ID=Physo143062.1;Parent=Physo143062;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 ensembl protein_coding_gene 54947 61082 . + . ID=Physo143063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280017;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 54947 61082 . + . ID=Physo143063;Parent=Physo143063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 54947 55955 . + 0 ID=Physo143063;Parent=Physo143063;rank=1 scaffold_128 . exon 54947 55955 . + . ID=Physo143063.1;Parent=Physo143063;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 . CDS 56520 60083 . + 0 ID=Physo143063;Parent=Physo143063;rank=2 scaffold_128 . exon 56520 60083 . + . ID=Physo143063.2;Parent=Physo143063;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_128 . CDS 60280 61082 . + 0 ID=Physo143063;Parent=Physo143063;rank=3 scaffold_128 ensembl protein_coding_gene 49673 51477 . + . ID=Physo158687;biotype=protein_coding;external_name=C_scaffold_128000003;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 49673 51477 . + . ID=Physo158687;Parent=Physo158687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 49673 50028 . + 0 ID=Physo158687;Parent=Physo158687;rank=1 scaffold_128 . exon 49673 50028 . + . ID=Physo158687.1;Parent=Physo158687;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . CDS 50100 50610 . + 0 ID=Physo158687;Parent=Physo158687;rank=2 scaffold_128 . exon 50100 50610 . + . ID=Physo158687.2;Parent=Physo158687;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 50650 51129 . + 0 ID=Physo158687;Parent=Physo158687;rank=3 scaffold_128 . exon 50650 51129 . + . ID=Physo158687.3;Parent=Physo158687;constitutive=1;rank=3 scaffold_128 . CDS 51382 51477 . + 0 ID=Physo158687;Parent=Physo158687;rank=4 scaffold_128 . exon 51382 51477 . + . ID=Physo158687.4;Parent=Physo158687;constitutive=1;rank=4 scaffold_128 . biological_region 59119 59122 0.999 - . logic_name=eponine scaffold_128 . biological_region 61565 61570 0.999 + . logic_name=eponine scaffold_128 . biological_region 64772 64774 0.999 + . logic_name=eponine scaffold_128 . exon 60280 61082 . + . ID=Physo143063.3;Parent=Physo143063;constitutive=1;ensembl_phase=1;rank=3 scaffold_128 ensembl protein_coding_gene 62863 63650 . - . ID=Physo143065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280019;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 62863 63650 . - . ID=Physo143065;Parent=Physo143065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 62863 62889 . - 0 ID=Physo143065;Parent=Physo143065;rank=2 scaffold_128 . exon 62863 62889 . - . ID=Physo143065.2;Parent=Physo143065;constitutive=1;rank=2 scaffold_128 . CDS 62913 63650 . - 0 ID=Physo143065;Parent=Physo143065;rank=1 scaffold_128 . exon 62913 63650 . - . ID=Physo143065.1;Parent=Physo143065;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 61542 62360 . + . ID=Physo158689;biotype=protein_coding;external_name=C_scaffold_128000005;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 61542 62360 . + . ID=Physo158689;Parent=Physo158689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 61542 62015 . + 0 ID=Physo158689;Parent=Physo158689;rank=1 scaffold_128 . exon 61542 62015 . + . ID=Physo158689.1;Parent=Physo158689;constitutive=1;rank=1 scaffold_128 . CDS 62148 62360 . + 0 ID=Physo158689;Parent=Physo158689;rank=2 scaffold_128 . exon 62148 62360 . + . ID=Physo158689.2;Parent=Physo158689;constitutive=1;rank=2 scaffold_128 . repeat_region 68432 68453 . ? . description=trf scaffold_128 . repeat_region 68432 68453 . ? . description=dust scaffold_128 . repeat_region 74601 78900 . ? . description=dust scaffold_128 ensembl protein_coding_gene 69819 70287 . - . ID=Physo123464;biotype=protein_coding;external_name=estExt_Genewise1.C_1280021;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 69819 70287 . - . ID=Physo123464;Parent=Physo123464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 69819 70040 . - 0 ID=Physo123464;Parent=Physo123464;rank=1 scaffold_128 . exon 69819 70287 . - . ID=Physo123464.1;Parent=Physo123464;constitutive=1;ensembl_phase=-1;rank=1 scaffold_128 . biological_region 85742 85742 0.999 + . logic_name=eponine scaffold_128 . biological_region 86140 86142 0.999 - . logic_name=eponine scaffold_128 . biological_region 86156 86160 0.999 + . logic_name=eponine scaffold_128 . biological_region 86216 86217 0.999 + . logic_name=eponine scaffold_128 . biological_region 86284 86287 0.999 + . logic_name=eponine scaffold_128 . biological_region 86311 86313 0.999 - . logic_name=eponine scaffold_128 . biological_region 86349 86353 0.999 - . logic_name=eponine scaffold_128 . biological_region 86565 86567 0.999 + . logic_name=eponine scaffold_128 . repeat_region 86884 88071 . + . description=GypsyPi-1c_I-int scaffold_128 . repeat_region 88261 88541 . + . description=GypsyPi-1c_I-int scaffold_128 . biological_region 89091 89091 0.999 + . logic_name=eponine scaffold_128 . biological_region 89187 89190 0.999 - . logic_name=eponine scaffold_128 . repeat_region 89981 89989 . ? . description=dust scaffold_128 . repeat_region 92205 93228 . + . description=Gypsy-2-I_PI-int scaffold_128 . repeat_region 93322 94465 . + . description=Gypsy-2-I_PI-int scaffold_128 . repeat_region 94450 94535 . + . description=Gypsy-2-I_PI-int scaffold_128 . repeat_region 94977 95043 . ? . description=trf scaffold_128 . repeat_region 94977 95043 . ? . description=trf scaffold_128 . repeat_region 94978 95043 . ? . description=trf scaffold_128 . repeat_region 94980 95075 . ? . description=dust scaffold_128 ensembl protein_coding_gene 85662 88337 . + . ID=Physo143066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280020;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 85662 88337 . + . ID=Physo143066;Parent=Physo143066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 85662 85694 . + 0 ID=Physo143066;Parent=Physo143066;rank=1 scaffold_128 . exon 85662 85694 . + . ID=Physo143066.1;Parent=Physo143066;constitutive=1;rank=1 scaffold_128 . CDS 85718 88012 . + 0 ID=Physo143066;Parent=Physo143066;rank=2 scaffold_128 . exon 85718 88012 . + . ID=Physo143066.2;Parent=Physo143066;constitutive=1;rank=2 scaffold_128 . CDS 88096 88248 . + 0 ID=Physo143066;Parent=Physo143066;rank=3 scaffold_128 . exon 88096 88248 . + . ID=Physo143066.3;Parent=Physo143066;constitutive=1;rank=3 scaffold_128 . CDS 88323 88337 . + 0 ID=Physo143066;Parent=Physo143066;rank=4 scaffold_128 . exon 88323 88337 . + . ID=Physo143066.4;Parent=Physo143066;constitutive=1;rank=4 scaffold_128 ensembl protein_coding_gene 92510 92854 . + . ID=Physo143067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280021;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 92510 92854 . + . ID=Physo143067;Parent=Physo143067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 92510 92854 . + 0 ID=Physo143067;Parent=Physo143067;rank=1 scaffold_128 . exon 92510 92854 . + . ID=Physo143067.1;Parent=Physo143067;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 93208 94602 . + . ID=Physo143068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280022;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 93208 94602 . + . ID=Physo143068;Parent=Physo143068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 93208 93725 . + 0 ID=Physo143068;Parent=Physo143068;rank=1 scaffold_128 . exon 93208 93725 . + . ID=Physo143068.1;Parent=Physo143068;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . CDS 93852 94311 . + 0 ID=Physo143068;Parent=Physo143068;rank=2 scaffold_128 . exon 93852 94311 . + . ID=Physo143068.2;Parent=Physo143068;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 94456 94602 . + 0 ID=Physo143068;Parent=Physo143068;rank=3 scaffold_128 . exon 94456 94602 . + . ID=Physo143068.3;Parent=Physo143068;constitutive=1;rank=3 scaffold_128 ensembl protein_coding_gene 94828 95816 . - . ID=Physo143069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280023;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 94828 95816 . - . ID=Physo143069;Parent=Physo143069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 94828 95504 . - 0 ID=Physo143069;Parent=Physo143069;rank=2 scaffold_128 . exon 94828 95504 . - . ID=Physo143069.2;Parent=Physo143069;constitutive=1;ensembl_phase=1;rank=2 scaffold_128 . CDS 95786 95816 . - 0 ID=Physo143069;Parent=Physo143069;rank=1 scaffold_128 . exon 95786 95816 . - . ID=Physo143069.1;Parent=Physo143069;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 ensembl protein_coding_gene 97302 97831 . + . ID=Physo143070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280024;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 97302 97831 . + . ID=Physo143070;Parent=Physo143070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 97302 97380 . + 0 ID=Physo143070;Parent=Physo143070;rank=1 scaffold_128 . exon 97302 97380 . + . ID=Physo143070.1;Parent=Physo143070;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 . CDS 97455 97831 . + 0 ID=Physo143070;Parent=Physo143070;rank=2 scaffold_128 . exon 97455 97831 . + . ID=Physo143070.2;Parent=Physo143070;constitutive=1;ensembl_phase=1;rank=2 scaffold_128 . repeat_region 107589 107625 . ? . description=trf scaffold_128 . biological_region 110859 110862 0.999 - . logic_name=eponine scaffold_128 . repeat_region 111266 111299 . ? . description=trf scaffold_128 . biological_region 111590 111597 0.999 + . logic_name=eponine scaffold_128 . biological_region 111626 111629 0.999 + . logic_name=eponine scaffold_128 . biological_region 112128 112130 0.999 + . logic_name=eponine scaffold_128 . biological_region 112387 112387 0.999 + . logic_name=eponine scaffold_128 . biological_region 112935 112938 0.999 + . logic_name=eponine scaffold_128 . biological_region 112963 112966 0.999 - . logic_name=eponine scaffold_128 . biological_region 113742 113744 0.999 + . logic_name=eponine scaffold_128 ensembl protein_coding_gene 104962 106123 . - . ID=Physo143071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280025;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 104962 106123 . - . ID=Physo143071;Parent=Physo143071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 104962 105102 . - 0 ID=Physo143071;Parent=Physo143071;rank=4 scaffold_128 . exon 104962 105102 . - . ID=Physo143071.4;Parent=Physo143071;constitutive=1;rank=4 scaffold_128 . CDS 105228 105363 . - 0 ID=Physo143071;Parent=Physo143071;rank=3 scaffold_128 . exon 105228 105363 . - . ID=Physo143071.3;Parent=Physo143071;constitutive=1;ensembl_phase=2;rank=3 scaffold_128 . CDS 105441 105550 . - 0 ID=Physo143071;Parent=Physo143071;rank=2 scaffold_128 . exon 105441 105550 . - . ID=Physo143071.2;Parent=Physo143071;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_128 . CDS 105644 106123 . - 0 ID=Physo143071;Parent=Physo143071;rank=1 scaffold_128 . exon 105644 106123 . - . ID=Physo143071.1;Parent=Physo143071;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 106967 109980 . + . ID=Physo143072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280026;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 106967 109980 . + . ID=Physo143072;Parent=Physo143072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 106967 107524 . + 0 ID=Physo143072;Parent=Physo143072;rank=1 scaffold_128 . exon 106967 107524 . + . ID=Physo143072.1;Parent=Physo143072;constitutive=1;rank=1 scaffold_128 . CDS 107568 109916 . + 0 ID=Physo143072;Parent=Physo143072;rank=2 scaffold_128 . exon 107568 109916 . + . ID=Physo143072.2;Parent=Physo143072;constitutive=1;rank=2 scaffold_128 . CDS 109972 109980 . + 0 ID=Physo143072;Parent=Physo143072;rank=3 scaffold_128 . exon 109972 109980 . + . ID=Physo143072.3;Parent=Physo143072;constitutive=1;rank=3 scaffold_128 ensembl protein_coding_gene 110256 111686 . - . ID=Physo143073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280027;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 110256 111686 . - . ID=Physo143073;Parent=Physo143073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 110256 110297 . - 0 ID=Physo143073;Parent=Physo143073;rank=3 scaffold_128 . exon 110256 110297 . - . ID=Physo143073.3;Parent=Physo143073;constitutive=1;rank=3 scaffold_128 . CDS 110485 111237 . - 0 ID=Physo143073;Parent=Physo143073;rank=2 scaffold_128 . exon 110485 111237 . - . ID=Physo143073.2;Parent=Physo143073;constitutive=1;rank=2 scaffold_128 . CDS 111321 111686 . - 0 ID=Physo143073;Parent=Physo143073;rank=1 scaffold_128 . exon 111321 111686 . - . ID=Physo143073.1;Parent=Physo143073;constitutive=1;rank=1 scaffold_128 ensembl protein_coding_gene 112791 114976 . + . ID=Physo143074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280028;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 112791 114976 . + . ID=Physo143074;Parent=Physo143074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . exon 112791 114133 . + . ID=Physo143074.1;Parent=Physo143074;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_128 . CDS 112951 114133 . + 0 ID=Physo143074;Parent=Physo143074;rank=1 scaffold_128 . CDS 114213 114361 . + 0 ID=Physo143074;Parent=Physo143074;rank=2 scaffold_128 . CDS 114395 114976 . + 0 ID=Physo143074;Parent=Physo143074;rank=3 scaffold_128 ensembl protein_coding_gene 118750 119724 . - . ID=Physo109533;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1280002;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 118750 119724 . - . ID=Physo109533;Parent=Physo109533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 118750 118927 . - 0 ID=Physo109533;Parent=Physo109533;rank=5 scaffold_128 . exon 118750 118927 . - . ID=Physo109533.5;Parent=Physo109533;constitutive=1;ensembl_phase=2;rank=5 scaffold_128 . CDS 119002 119104 . - 0 ID=Physo109533;Parent=Physo109533;rank=4 scaffold_128 . exon 119002 119104 . - . ID=Physo109533.4;Parent=Physo109533;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_128 . CDS 119184 119284 . - 0 ID=Physo109533;Parent=Physo109533;rank=3 scaffold_128 . exon 119184 119284 . - . ID=Physo109533.3;Parent=Physo109533;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_128 . CDS 119357 119514 . - 0 ID=Physo109533;Parent=Physo109533;rank=2 scaffold_128 . exon 119357 119514 . - . ID=Physo109533.2;Parent=Physo109533;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_128 . CDS 119676 119699 . - 0 ID=Physo109533;Parent=Physo109533;rank=1 scaffold_128 . exon 119676 119724 . - . ID=Physo109533.1;Parent=Physo109533;constitutive=1;ensembl_phase=-1;rank=1 scaffold_128 . exon 114213 114361 . + . ID=Physo143074.2;Parent=Physo143074;constitutive=1;ensembl_phase=1;rank=2 scaffold_128 . exon 114395 114976 . + . ID=Physo143074.3;Parent=Physo143074;constitutive=1;rank=3 scaffold_128 ensembl protein_coding_gene 119999 123496 . + . ID=Physo143076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280030;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 119999 123496 . + . ID=Physo143076;Parent=Physo143076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 119999 123496 . + 0 ID=Physo143076;Parent=Physo143076;rank=1 scaffold_128 . exon 119999 123496 . + . ID=Physo143076.1;Parent=Physo143076;constitutive=1;rank=1 scaffold_128 . repeat_region 126067 126082 . ? . description=dust scaffold_128 . biological_region 126692 126694 0.999 - . logic_name=eponine scaffold_128 . repeat_region 127603 127610 . ? . description=dust scaffold_128 . biological_region 128693 128697 0.999 - . logic_name=eponine scaffold_128 ensembl protein_coding_gene 128136 129668 . + . ID=Physo143077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280031;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 128136 129668 . + . ID=Physo143077;Parent=Physo143077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 128136 129551 . + 0 ID=Physo143077;Parent=Physo143077;rank=1 scaffold_128 . exon 128136 129668 . + . ID=Physo143077.1;Parent=Physo143077;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_128 ensembl protein_coding_gene 130442 132093 . - . ID=Physo143078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280032;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 130442 132093 . - . ID=Physo143078;Parent=Physo143078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 130442 132070 . - 0 ID=Physo143078;Parent=Physo143078;rank=1 scaffold_128 . exon 130442 132093 . - . ID=Physo143078.1;Parent=Physo143078;constitutive=1;ensembl_phase=-1;rank=1 scaffold_128 . repeat_region 138001 138027 . ? . description=trf scaffold_128 ensembl protein_coding_gene 134667 136335 . - . ID=Physo143079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280033;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 134667 136335 . - . ID=Physo143079;Parent=Physo143079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 134667 134927 . - 0 ID=Physo143079;Parent=Physo143079;rank=3 scaffold_128 . exon 134667 134927 . - . ID=Physo143079.3;Parent=Physo143079;constitutive=1;rank=3 scaffold_128 . CDS 134948 135027 . - 0 ID=Physo143079;Parent=Physo143079;rank=2 scaffold_128 . exon 134948 135027 . - . ID=Physo143079.2;Parent=Physo143079;constitutive=1;ensembl_phase=1;rank=2 scaffold_128 . CDS 135666 136335 . - 0 ID=Physo143079;Parent=Physo143079;rank=1 scaffold_128 . exon 135666 136335 . - . ID=Physo143079.1;Parent=Physo143079;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 ensembl protein_coding_gene 137718 139315 . + . ID=Physo143080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280034;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 137718 139315 . + . ID=Physo143080;Parent=Physo143080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 137718 137839 . + 0 ID=Physo143080;Parent=Physo143080;rank=1 scaffold_128 . exon 137718 137839 . + . ID=Physo143080.1;Parent=Physo143080;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . CDS 137902 139315 . + 0 ID=Physo143080;Parent=Physo143080;rank=2 scaffold_128 . exon 137902 139315 . + . ID=Physo143080.2;Parent=Physo143080;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . repeat_region 143520 143569 . ? . description=dust scaffold_128 . repeat_region 144775 145053 . ? . description=dust scaffold_128 . biological_region 146748 146748 0.999 + . logic_name=eponine scaffold_128 . biological_region 147034 147039 0.999 + . logic_name=eponine scaffold_128 . biological_region 147056 147057 0.999 - . logic_name=eponine scaffold_128 . biological_region 147087 147092 0.999 - . logic_name=eponine scaffold_128 . biological_region 147381 147383 0.999 - . logic_name=eponine scaffold_128 . biological_region 147404 147408 0.999 + . logic_name=eponine scaffold_128 . biological_region 147451 147452 0.999 - . logic_name=eponine scaffold_128 . biological_region 147520 147527 0.999 - . logic_name=eponine scaffold_128 . repeat_region 148041 148175 . ? . description=dust scaffold_128 . repeat_region 149456 149505 . ? . description=dust scaffold_128 . biological_region 152091 152093 0.999 - . logic_name=eponine scaffold_128 ensembl protein_coding_gene 145497 146199 . - . ID=Physo143081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280035;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 145497 146199 . - . ID=Physo143081;Parent=Physo143081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 145497 145713 . - 0 ID=Physo143081;Parent=Physo143081;rank=4 scaffold_128 . exon 145497 145713 . - . ID=Physo143081.4;Parent=Physo143081;constitutive=1;ensembl_phase=2;rank=4 scaffold_128 . CDS 145755 145816 . - 0 ID=Physo143081;Parent=Physo143081;rank=3 scaffold_128 . exon 145755 145816 . - . ID=Physo143081.3;Parent=Physo143081;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_128 . CDS 145878 146109 . - 0 ID=Physo143081;Parent=Physo143081;rank=2 scaffold_128 . exon 145878 146109 . - . ID=Physo143081.2;Parent=Physo143081;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 146171 146199 . - 0 ID=Physo143081;Parent=Physo143081;rank=1 scaffold_128 . exon 146171 146199 . - . ID=Physo143081.1;Parent=Physo143081;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 ensembl protein_coding_gene 146563 147714 . + . ID=Physo143082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280036;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 146563 147714 . + . ID=Physo143082;Parent=Physo143082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 146563 146571 . + 0 ID=Physo143082;Parent=Physo143082;rank=1 scaffold_128 . exon 146563 146571 . + . ID=Physo143082.1;Parent=Physo143082;constitutive=1;rank=1 scaffold_128 . CDS 146700 146716 . + 0 ID=Physo143082;Parent=Physo143082;rank=2 scaffold_128 . exon 146700 146716 . + . ID=Physo143082.2;Parent=Physo143082;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_128 . CDS 146774 147202 . + 0 ID=Physo143082;Parent=Physo143082;rank=3 scaffold_128 . exon 146774 147202 . + . ID=Physo143082.3;Parent=Physo143082;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_128 . CDS 147269 147323 . + 0 ID=Physo143082;Parent=Physo143082;rank=4 scaffold_128 . exon 147269 147323 . + . ID=Physo143082.4;Parent=Physo143082;constitutive=1;ensembl_phase=2;rank=4 scaffold_128 . CDS 147365 147570 . + 0 ID=Physo143082;Parent=Physo143082;rank=5 scaffold_128 . exon 147365 147570 . + . ID=Physo143082.5;Parent=Physo143082;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_128 . CDS 147601 147613 . + 0 ID=Physo143082;Parent=Physo143082;rank=6 scaffold_128 . exon 147601 147714 . + . ID=Physo143082.6;Parent=Physo143082;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_128 ensembl protein_coding_gene 151714 152415 . - . ID=Physo143083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280037;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 151714 152415 . - . ID=Physo143083;Parent=Physo143083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 151714 151951 . - 0 ID=Physo143083;Parent=Physo143083;rank=4 scaffold_128 . exon 151714 151951 . - . ID=Physo143083.4;Parent=Physo143083;constitutive=1;ensembl_phase=2;rank=4 scaffold_128 . CDS 151972 152033 . - 0 ID=Physo143083;Parent=Physo143083;rank=3 scaffold_128 . exon 151972 152033 . - . ID=Physo143083.3;Parent=Physo143083;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_128 . CDS 152095 152326 . - 0 ID=Physo143083;Parent=Physo143083;rank=2 scaffold_128 . exon 152095 152326 . - . ID=Physo143083.2;Parent=Physo143083;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 . CDS 152387 152415 . - 0 ID=Physo143083;Parent=Physo143083;rank=1 scaffold_128 ensembl protein_coding_gene 159735 160952 . + . ID=Physo109535;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1280004;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 159735 160952 . + . ID=Physo109535;Parent=Physo109535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 159735 160952 . + 0 ID=Physo109535;Parent=Physo109535;rank=1 scaffold_128 . exon 159735 160952 . + . ID=Physo109535.1;Parent=Physo109535;constitutive=1;rank=1 scaffold_128 . exon 152387 152415 . - . ID=Physo143083.1;Parent=Physo143083;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 ensembl protein_coding_gene 154156 155111 . + . ID=Physo143084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280038;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 154156 155111 . + . ID=Physo143084;Parent=Physo143084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 154156 154616 . + 0 ID=Physo143084;Parent=Physo143084;rank=1 scaffold_128 . exon 154156 154616 . + . ID=Physo143084.1;Parent=Physo143084;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_128 . CDS 154844 155111 . + 0 ID=Physo143084;Parent=Physo143084;rank=2 scaffold_128 . exon 154844 155111 . + . ID=Physo143084.2;Parent=Physo143084;constitutive=1;ensembl_phase=2;rank=2 scaffold_128 ensembl protein_coding_gene 157759 159129 . - . ID=Physo143085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280039;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 157759 159129 . - . ID=Physo143085;Parent=Physo143085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 157759 157827 . - 0 ID=Physo143085;Parent=Physo143085;rank=2 scaffold_128 . exon 157759 157827 . - . ID=Physo143085.2;Parent=Physo143085;constitutive=1;rank=2 scaffold_128 . CDS 158017 159093 . - 0 ID=Physo143085;Parent=Physo143085;rank=1 scaffold_128 . exon 158017 159129 . - . ID=Physo143085.1;Parent=Physo143085;constitutive=1;ensembl_phase=-1;rank=1 scaffold_128 ensembl protein_coding_gene 161169 162533 . + . ID=Physo143088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280042;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 161169 162533 . + . ID=Physo143088;Parent=Physo143088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 161169 161613 . + 0 ID=Physo143088;Parent=Physo143088;rank=1 scaffold_128 . exon 161169 161613 . + . ID=Physo143088.1;Parent=Physo143088;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 . CDS 161635 161669 . + 0 ID=Physo143088;Parent=Physo143088;rank=2 scaffold_128 . exon 161635 161689 . + . ID=Physo143088.2;Parent=Physo143088;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_128 . repeat_region 161694 162421 . ? . description=dust scaffold_128 . repeat_region 163568 163617 . ? . description=dust scaffold_128 . biological_region 164192 164201 0.999 + . logic_name=eponine scaffold_128 . biological_region 164220 164221 0.999 + . logic_name=eponine scaffold_128 . biological_region 164245 164249 0.999 + . logic_name=eponine scaffold_128 . biological_region 164261 164264 0.999 - . logic_name=eponine scaffold_128 . biological_region 164303 164308 0.999 + . logic_name=eponine scaffold_128 . biological_region 164323 164328 0.999 - . logic_name=eponine scaffold_128 . biological_region 164356 164361 0.999 - . logic_name=eponine scaffold_128 . biological_region 164675 164677 0.999 + . logic_name=eponine scaffold_128 . biological_region 164790 164797 0.999 - . logic_name=eponine scaffold_128 . repeat_region 167181 170322 . ? . description=dust scaffold_128 . biological_region 170693 170697 0.999 + . logic_name=eponine scaffold_128 . exon 162495 162533 . + . ID=Physo143088.3;Parent=Physo143088;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_128 ensembl protein_coding_gene 164009 164883 . + . ID=Physo143089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280043;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 164009 164883 . + . ID=Physo143089;Parent=Physo143089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . CDS 164009 164030 . + 0 ID=Physo143089;Parent=Physo143089;rank=1 scaffold_128 . exon 164009 164030 . + . ID=Physo143089.1;Parent=Physo143089;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_128 . CDS 164072 164840 . + 0 ID=Physo143089;Parent=Physo143089;rank=2 scaffold_128 . exon 164072 164840 . + . ID=Physo143089.2;Parent=Physo143089;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_128 . CDS 164871 164883 . + 0 ID=Physo143089;Parent=Physo143089;rank=3 scaffold_128 . exon 164871 164883 . + . ID=Physo143089.3;Parent=Physo143089;constitutive=1;ensembl_phase=2;rank=3 scaffold_128 ensembl protein_coding_gene 165010 167063 . - . ID=Physo143090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1280044;logic_name=jgi_physo1_1 scaffold_128 ensembl transcript 165010 167063 . - . ID=Physo143090;Parent=Physo143090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_128 . exon 165010 167063 . - . ID=Physo143090.1;Parent=Physo143090;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_128 . CDS 165198 167063 . - 0 ID=Physo143090;Parent=Physo143090;rank=1 ##gff-version 3 ##sequence-region scaffold_127 1 174572 scaffold_127 . repeat_region 1 1210 . ? . description=trf scaffold_127 . biological_region 568 571 0.999 - . logic_name=eponine scaffold_127 . repeat_region 1211 3213 . + . description=Gypsy-2-I_PI-int scaffold_127 . biological_region 5419 5423 0.999 + . logic_name=eponine scaffold_127 . biological_region 6655 6660 0.999 + . logic_name=eponine scaffold_127 . biological_region 6677 6683 0.999 - . logic_name=eponine scaffold_127 . biological_region 6712 6712 0.999 - . logic_name=eponine scaffold_127 . biological_region 6747 6754 0.999 - . logic_name=eponine scaffold_127 . biological_region 6766 6768 0.999 + . logic_name=eponine scaffold_127 . biological_region 7165 7167 0.999 + . logic_name=eponine scaffold_127 . biological_region 7425 7428 0.999 - . logic_name=eponine scaffold_127 . biological_region 7744 7748 0.999 - . logic_name=eponine scaffold_127 . repeat_region 8310 8363 . ? . description=trf scaffold_127 ensembl protein_coding_gene 4899 5789 . + . ID=Physo143011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270001;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 4899 5789 . + . ID=Physo143011;Parent=Physo143011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 4899 5789 . + 0 ID=Physo143011;Parent=Physo143011;rank=1 scaffold_127 . exon 4899 5789 . + . ID=Physo143011.1;Parent=Physo143011;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 6777 9224 . + . ID=Physo143012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270002;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 6777 9224 . + . ID=Physo143012;Parent=Physo143012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 6777 6859 . + 0 ID=Physo143012;Parent=Physo143012;rank=1 scaffold_127 . exon 6777 6859 . + . ID=Physo143012.1;Parent=Physo143012;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 . CDS 6914 7425 . + 0 ID=Physo143012;Parent=Physo143012;rank=2 scaffold_127 . exon 6914 7425 . + . ID=Physo143012.2;Parent=Physo143012;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_127 . CDS 7492 8086 . + 0 ID=Physo143012;Parent=Physo143012;rank=3 scaffold_127 . exon 7492 8086 . + . ID=Physo143012.3;Parent=Physo143012;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_127 . CDS 8116 8378 . + 0 ID=Physo143012;Parent=Physo143012;rank=4 scaffold_127 . exon 8116 8378 . + . ID=Physo143012.4;Parent=Physo143012;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_127 . CDS 8455 9224 . + 0 ID=Physo143012;Parent=Physo143012;rank=5 scaffold_127 . exon 8455 9224 . + . ID=Physo143012.5;Parent=Physo143012;constitutive=1;ensembl_phase=1;rank=5 scaffold_127 ensembl protein_coding_gene 9591 9992 . - . ID=Physo143013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270003;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 9591 9992 . - . ID=Physo143013;Parent=Physo143013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 9591 9992 . - 0 ID=Physo143013;Parent=Physo143013;rank=1 scaffold_127 . exon 9591 9992 . - . ID=Physo143013.1;Parent=Physo143013;constitutive=1;rank=1 scaffold_127 . repeat_region 10131 10180 . ? . description=dust scaffold_127 . repeat_region 11597 11604 . ? . description=dust scaffold_127 . repeat_region 12609 14062 . ? . description=dust scaffold_127 . repeat_region 15812 15861 . ? . description=dust scaffold_127 . repeat_region 18439 19774 . - . description=GypsyPi-1c_I-int scaffold_127 ensembl protein_coding_gene 18311 22231 . - . ID=Physo143014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270004;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 18311 22231 . - . ID=Physo143014;Parent=Physo143014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 18311 22231 . - 0 ID=Physo143014;Parent=Physo143014;rank=1 scaffold_127 . exon 18311 22231 . - . ID=Physo143014.1;Parent=Physo143014;constitutive=1;rank=1 scaffold_127 . biological_region 19800 19800 0.999 + . logic_name=eponine scaffold_127 . biological_region 19868 19870 0.999 - . logic_name=eponine scaffold_127 . biological_region 19884 19886 0.999 - . logic_name=eponine scaffold_127 . biological_region 19922 19927 0.999 + . logic_name=eponine scaffold_127 . biological_region 20335 20337 0.999 - . logic_name=eponine scaffold_127 . biological_region 20936 20938 0.999 - . logic_name=eponine scaffold_127 . biological_region 20982 20985 0.999 - . logic_name=eponine scaffold_127 . biological_region 21260 21261 0.999 - . logic_name=eponine scaffold_127 . biological_region 21313 21319 0.999 + . logic_name=eponine scaffold_127 . biological_region 21905 21909 0.999 + . logic_name=eponine scaffold_127 . biological_region 24203 24206 0.999 - . logic_name=eponine scaffold_127 . biological_region 24274 24279 0.999 + . logic_name=eponine scaffold_127 . biological_region 24278 24281 0.999 - . logic_name=eponine scaffold_127 . biological_region 24295 24298 0.999 + . logic_name=eponine scaffold_127 . biological_region 24333 24336 0.999 - . logic_name=eponine scaffold_127 . biological_region 24385 24388 0.999 - . logic_name=eponine scaffold_127 . biological_region 24558 24560 0.999 - . logic_name=eponine scaffold_127 . biological_region 24634 24637 0.999 + . logic_name=eponine scaffold_127 . biological_region 24644 24646 0.999 + . logic_name=eponine scaffold_127 . biological_region 24790 24794 0.999 - . logic_name=eponine scaffold_127 ensembl protein_coding_gene 23952 26102 . - . ID=Physo143015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270005;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 23952 26102 . - . ID=Physo143015;Parent=Physo143015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 23952 26102 . - 0 ID=Physo143015;Parent=Physo143015;rank=1 scaffold_127 . exon 23952 26102 . - . ID=Physo143015.1;Parent=Physo143015;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 26567 27518 . + . ID=Physo143016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270006;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 26567 27518 . + . ID=Physo143016;Parent=Physo143016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 26567 27027 . + 0 ID=Physo143016;Parent=Physo143016;rank=1 scaffold_127 . exon 26567 27027 . + . ID=Physo143016.1;Parent=Physo143016;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 . CDS 27164 27518 . + 0 ID=Physo143016;Parent=Physo143016;rank=2 scaffold_127 . exon 27164 27518 . + . ID=Physo143016.2;Parent=Physo143016;constitutive=1;ensembl_phase=2;rank=2 scaffold_127 . repeat_region 30235 30284 . ? . description=dust scaffold_127 . repeat_region 33513 33585 . ? . description=trf scaffold_127 . repeat_region 36505 36520 . ? . description=dust scaffold_127 ensembl protein_coding_gene 30420 31259 . + . ID=Physo109528;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1270001;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 30420 31259 . + . ID=Physo109528;Parent=Physo109528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 30420 31259 . + 0 ID=Physo109528;Parent=Physo109528;rank=1 scaffold_127 . exon 30420 31259 . + . ID=Physo109528.1;Parent=Physo109528;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 37175 41320 . + . ID=Physo143018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270008;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 37175 41320 . + . ID=Physo143018;Parent=Physo143018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 37175 37824 . + 0 ID=Physo143018;Parent=Physo143018;rank=1 scaffold_127 . exon 37175 37824 . + . ID=Physo143018.1;Parent=Physo143018;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 . CDS 37848 39708 . + 0 ID=Physo143018;Parent=Physo143018;rank=2 scaffold_127 . exon 37848 39708 . + . ID=Physo143018.2;Parent=Physo143018;constitutive=1;ensembl_phase=2;rank=2 scaffold_127 . CDS 39816 39894 . + 0 ID=Physo143018;Parent=Physo143018;rank=3 scaffold_127 . CDS 39923 40014 . + 0 ID=Physo143018;Parent=Physo143018;rank=4 scaffold_127 . CDS 40098 40265 . + 0 ID=Physo143018;Parent=Physo143018;rank=5 scaffold_127 . CDS 40348 40395 . + 0 ID=Physo143018;Parent=Physo143018;rank=6 scaffold_127 . CDS 40469 40570 . + 0 ID=Physo143018;Parent=Physo143018;rank=7 scaffold_127 . CDS 40656 40895 . + 0 ID=Physo143018;Parent=Physo143018;rank=8 scaffold_127 . CDS 40976 41320 . + 0 ID=Physo143018;Parent=Physo143018;rank=9 scaffold_127 . biological_region 38882 38886 0.999 + . logic_name=eponine scaffold_127 . biological_region 39030 39032 0.999 - . logic_name=eponine scaffold_127 . biological_region 39039 39042 0.999 - . logic_name=eponine scaffold_127 . biological_region 39116 39118 0.999 + . logic_name=eponine scaffold_127 . biological_region 39287 39292 0.999 + . logic_name=eponine scaffold_127 . biological_region 39339 39344 0.999 + . logic_name=eponine scaffold_127 . biological_region 39378 39381 0.999 - . logic_name=eponine scaffold_127 . biological_region 39393 39396 0.999 + . logic_name=eponine scaffold_127 . biological_region 39396 39402 0.999 - . logic_name=eponine scaffold_127 . biological_region 39414 39415 0.999 - . logic_name=eponine scaffold_127 . biological_region 39470 39473 0.999 + . logic_name=eponine scaffold_127 . biological_region 39929 39930 0.999 + . logic_name=eponine scaffold_127 . biological_region 40060 40064 0.999 - . logic_name=eponine scaffold_127 . biological_region 40079 40083 0.999 + . logic_name=eponine scaffold_127 . biological_region 41318 41321 0.999 - . logic_name=eponine scaffold_127 ensembl protein_coding_gene 41616 43066 . - . ID=Physo123421;biotype=protein_coding;external_name=estExt_Genewise1.C_1270005;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 41616 43066 . - . ID=Physo123421;Parent=Physo123421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 41616 41678 . - 0 ID=Physo123421;Parent=Physo123421;rank=9 scaffold_127 . exon 41616 41678 . - . ID=Physo123421.9;Parent=Physo123421;constitutive=1;rank=9 scaffold_127 . CDS 41745 41884 . - 0 ID=Physo123421;Parent=Physo123421;rank=8 scaffold_127 . exon 41745 41884 . - . ID=Physo123421.8;Parent=Physo123421;constitutive=1;ensembl_phase=1;rank=8 scaffold_127 . CDS 41963 42139 . - 0 ID=Physo123421;Parent=Physo123421;rank=7 scaffold_127 . exon 41963 42139 . - . ID=Physo123421.7;Parent=Physo123421;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_127 . CDS 42207 42304 . - 0 ID=Physo123421;Parent=Physo123421;rank=6 scaffold_127 . exon 42207 42304 . - . ID=Physo123421.6;Parent=Physo123421;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_127 . CDS 42371 42420 . - 0 ID=Physo123421;Parent=Physo123421;rank=5 scaffold_127 . exon 42371 42420 . - . ID=Physo123421.5;Parent=Physo123421;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_127 . CDS 42489 42545 . - 0 ID=Physo123421;Parent=Physo123421;rank=4 scaffold_127 . exon 42489 42545 . - . ID=Physo123421.4;Parent=Physo123421;constitutive=1;rank=4 scaffold_127 . CDS 42610 42725 . - 0 ID=Physo123421;Parent=Physo123421;rank=3 scaffold_127 . exon 42610 42725 . - . ID=Physo123421.3;Parent=Physo123421;constitutive=1;ensembl_phase=1;rank=3 scaffold_127 . CDS 42798 42893 . - 0 ID=Physo123421;Parent=Physo123421;rank=2 scaffold_127 . exon 42798 42893 . - . ID=Physo123421.2;Parent=Physo123421;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 42970 43015 . - 0 ID=Physo123421;Parent=Physo123421;rank=1 scaffold_127 . exon 42970 43066 . - . ID=Physo123421.1;Parent=Physo123421;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_127 . exon 39816 39894 . + . ID=Physo143018.3;Parent=Physo143018;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_127 . exon 39923 40014 . + . ID=Physo143018.4;Parent=Physo143018;constitutive=1;ensembl_phase=1;rank=4 scaffold_127 . exon 40098 40265 . + . ID=Physo143018.5;Parent=Physo143018;constitutive=1;rank=5 scaffold_127 . exon 40348 40395 . + . ID=Physo143018.6;Parent=Physo143018;constitutive=1;rank=6 scaffold_127 . exon 40469 40570 . + . ID=Physo143018.7;Parent=Physo143018;constitutive=1;rank=7 scaffold_127 . exon 40656 40895 . + . ID=Physo143018.8;Parent=Physo143018;constitutive=1;rank=8 scaffold_127 . exon 40976 41320 . + . ID=Physo143018.9;Parent=Physo143018;constitutive=1;rank=9 scaffold_127 ensembl protein_coding_gene 47589 48336 . - . ID=Physo143021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270011;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 47589 48336 . - . ID=Physo143021;Parent=Physo143021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 47589 47650 . - 0 ID=Physo143021;Parent=Physo143021;rank=3 scaffold_127 . exon 47589 47650 . - . ID=Physo143021.3;Parent=Physo143021;constitutive=1;ensembl_phase=1;rank=3 scaffold_127 . CDS 47789 48168 . - 0 ID=Physo143021;Parent=Physo143021;rank=2 scaffold_127 . exon 47789 48168 . - . ID=Physo143021.2;Parent=Physo143021;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_127 . CDS 48224 48336 . - 0 ID=Physo143021;Parent=Physo143021;rank=1 scaffold_127 . exon 48224 48336 . - . ID=Physo143021.1;Parent=Physo143021;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 . repeat_region 48815 48859 . ? . description=dust scaffold_127 . repeat_region 48821 48845 . ? . description=trf scaffold_127 . repeat_region 50293 52573 . - . description=GypsyPi-1c_I-int scaffold_127 . repeat_region 56811 56818 . ? . description=dust scaffold_127 . repeat_region 57862 57989 . + . description=(CTG)n scaffold_127 ensembl protein_coding_gene 50440 55057 . - . ID=Physo143022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270012;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 50440 55057 . - . ID=Physo143022;Parent=Physo143022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 50440 51037 . - 0 ID=Physo143022;Parent=Physo143022;rank=6 scaffold_127 . exon 50440 51037 . - . ID=Physo143022.6;Parent=Physo143022;constitutive=1;ensembl_phase=2;rank=6 scaffold_127 . CDS 51078 52806 . - 0 ID=Physo143022;Parent=Physo143022;rank=5 scaffold_127 . exon 51078 52806 . - . ID=Physo143022.5;Parent=Physo143022;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_127 . CDS 52884 53884 . - 0 ID=Physo143022;Parent=Physo143022;rank=4 scaffold_127 . exon 52884 53884 . - . ID=Physo143022.4;Parent=Physo143022;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_127 . CDS 53998 54050 . - 0 ID=Physo143022;Parent=Physo143022;rank=3 scaffold_127 . exon 53998 54050 . - . ID=Physo143022.3;Parent=Physo143022;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_127 . CDS 54210 54347 . - 0 ID=Physo143022;Parent=Physo143022;rank=2 scaffold_127 . exon 54210 54347 . - . ID=Physo143022.2;Parent=Physo143022;constitutive=1;rank=2 scaffold_127 . CDS 54431 55057 . - 0 ID=Physo143022;Parent=Physo143022;rank=1 scaffold_127 . exon 54431 55057 . - . ID=Physo143022.1;Parent=Physo143022;constitutive=1;rank=1 scaffold_127 . biological_region 63354 63355 0.999 + . logic_name=eponine scaffold_127 . biological_region 63408 63411 0.999 - . logic_name=eponine scaffold_127 . biological_region 65573 65573 0.999 - . logic_name=eponine scaffold_127 ensembl protein_coding_gene 61967 63640 . - . ID=Physo143023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270013;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 61967 63640 . - . ID=Physo143023;Parent=Physo143023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 61967 62341 . - 0 ID=Physo143023;Parent=Physo143023;rank=6 scaffold_127 . exon 61967 62341 . - . ID=Physo143023.6;Parent=Physo143023;constitutive=1;rank=6 scaffold_127 . CDS 62407 62711 . - 0 ID=Physo143023;Parent=Physo143023;rank=5 scaffold_127 . exon 62407 62711 . - . ID=Physo143023.5;Parent=Physo143023;constitutive=1;ensembl_phase=1;rank=5 scaffold_127 . CDS 62780 62999 . - 0 ID=Physo143023;Parent=Physo143023;rank=4 scaffold_127 . exon 62780 62999 . - . ID=Physo143023.4;Parent=Physo143023;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_127 . CDS 63070 63177 . - 0 ID=Physo143023;Parent=Physo143023;rank=3 scaffold_127 . exon 63070 63177 . - . ID=Physo143023.3;Parent=Physo143023;constitutive=1;rank=3 scaffold_127 . CDS 63259 63485 . - 0 ID=Physo143023;Parent=Physo143023;rank=2 scaffold_127 . exon 63259 63485 . - . ID=Physo143023.2;Parent=Physo143023;constitutive=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 63565 63640 . - 0 ID=Physo143023;Parent=Physo143023;rank=1 scaffold_127 . exon 63565 63640 . - . ID=Physo143023.1;Parent=Physo143023;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 . repeat_region 74780 74820 . ? . description=trf scaffold_127 . repeat_region 75939 75947 . ? . description=dust scaffold_127 ensembl protein_coding_gene 69769 75761 . + . ID=Physo143024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270014;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 69769 75761 . + . ID=Physo143024;Parent=Physo143024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 69769 69820 . + 0 ID=Physo143024;Parent=Physo143024;rank=1 scaffold_127 . exon 69769 69820 . + . ID=Physo143024.1;Parent=Physo143024;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 . CDS 69975 70079 . + 0 ID=Physo143024;Parent=Physo143024;rank=2 scaffold_127 . exon 69975 70079 . + . ID=Physo143024.2;Parent=Physo143024;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 70180 75761 . + 0 ID=Physo143024;Parent=Physo143024;rank=3 scaffold_127 . exon 70180 75761 . + . ID=Physo143024.3;Parent=Physo143024;constitutive=1;ensembl_phase=1;rank=3 scaffold_127 ensembl protein_coding_gene 75986 77878 . + . ID=Physo143025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270015;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 75986 77878 . + . ID=Physo143025;Parent=Physo143025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 75986 76894 . + 0 ID=Physo143025;Parent=Physo143025;rank=1 scaffold_127 . exon 75986 76894 . + . ID=Physo143025.1;Parent=Physo143025;constitutive=1;rank=1 scaffold_127 . CDS 76958 77023 . + 0 ID=Physo143025;Parent=Physo143025;rank=2 scaffold_127 . exon 76958 77023 . + . ID=Physo143025.2;Parent=Physo143025;constitutive=1;rank=2 scaffold_127 . CDS 77092 77186 . + 0 ID=Physo143025;Parent=Physo143025;rank=3 scaffold_127 . exon 77092 77186 . + . ID=Physo143025.3;Parent=Physo143025;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_127 . CDS 77249 77297 . + 0 ID=Physo143025;Parent=Physo143025;rank=4 scaffold_127 . exon 77249 77546 . + . ID=Physo143025.4;Parent=Physo143025;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_127 . biological_region 77847 77853 0.999 + . logic_name=eponine scaffold_127 . biological_region 77866 77870 0.999 + . logic_name=eponine scaffold_127 . biological_region 77885 77885 0.999 + . logic_name=eponine scaffold_127 . biological_region 77898 77903 0.999 + . logic_name=eponine scaffold_127 . biological_region 77931 77934 0.999 - . logic_name=eponine scaffold_127 . biological_region 77974 77975 0.999 - . logic_name=eponine scaffold_127 . biological_region 78001 78004 0.999 - . logic_name=eponine scaffold_127 . biological_region 78737 78738 0.999 + . logic_name=eponine scaffold_127 . biological_region 78943 78946 0.999 - . logic_name=eponine scaffold_127 . biological_region 80124 80127 0.999 + . logic_name=eponine scaffold_127 . biological_region 81496 81498 0.999 + . logic_name=eponine scaffold_127 . biological_region 81622 81627 0.999 - . logic_name=eponine scaffold_127 . biological_region 82013 82014 0.999 - . logic_name=eponine scaffold_127 . biological_region 84092 84103 0.999 + . logic_name=eponine scaffold_127 . biological_region 84114 84120 0.999 + . logic_name=eponine scaffold_127 . biological_region 84139 84140 0.999 + . logic_name=eponine scaffold_127 . biological_region 84497 84500 0.999 + . logic_name=eponine scaffold_127 . biological_region 84629 84634 0.999 - . logic_name=eponine scaffold_127 . biological_region 84935 84937 0.999 - . logic_name=eponine scaffold_127 . biological_region 85340 85344 0.999 + . logic_name=eponine scaffold_127 . exon 77629 77723 . + . ID=Physo143025.5;Parent=Physo143025;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_127 . exon 77803 77878 . + . ID=Physo143025.6;Parent=Physo143025;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=6 scaffold_127 ensembl protein_coding_gene 81483 82201 . + . ID=Physo143027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270017;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 81483 82201 . + . ID=Physo143027;Parent=Physo143027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 81483 82082 . + 0 ID=Physo143027;Parent=Physo143027;rank=1 scaffold_127 . exon 81483 82201 . + . ID=Physo143027.1;Parent=Physo143027;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_127 ensembl protein_coding_gene 82578 83143 . + . ID=Physo143028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270018;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 82578 83143 . + . ID=Physo143028;Parent=Physo143028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 82578 82669 . + 0 ID=Physo143028;Parent=Physo143028;rank=1 scaffold_127 . exon 82578 82669 . + . ID=Physo143028.1;Parent=Physo143028;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 . CDS 82740 83010 . + 0 ID=Physo143028;Parent=Physo143028;rank=2 scaffold_127 . exon 82740 83010 . + . ID=Physo143028.2;Parent=Physo143028;constitutive=1;ensembl_phase=2;rank=2 scaffold_127 . CDS 83096 83143 . + 0 ID=Physo143028;Parent=Physo143028;rank=3 scaffold_127 . exon 83096 83143 . + . ID=Physo143028.3;Parent=Physo143028;constitutive=1;rank=3 scaffold_127 ensembl protein_coding_gene 83706 84560 . - . ID=Physo143029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270019;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 83706 84560 . - . ID=Physo143029;Parent=Physo143029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 83706 84560 . - 0 ID=Physo143029;Parent=Physo143029;rank=1 scaffold_127 . exon 83706 84560 . - . ID=Physo143029.1;Parent=Physo143029;constitutive=1;rank=1 scaffold_127 . repeat_region 93304 93334 . ? . description=trf scaffold_127 . repeat_region 95406 95439 . ? . description=trf scaffold_127 ensembl protein_coding_gene 87299 89599 . - . ID=Physo143030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270020;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 87299 89599 . - . ID=Physo143030;Parent=Physo143030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 87299 89599 . - 0 ID=Physo143030;Parent=Physo143030;rank=1 scaffold_127 . exon 87299 89599 . - . ID=Physo143030.1;Parent=Physo143030;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 90391 93408 . - . ID=Physo143031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270021;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 90391 93408 . - . ID=Physo143031;Parent=Physo143031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 90391 93408 . - 0 ID=Physo143031;Parent=Physo143031;rank=1 scaffold_127 . exon 90391 93408 . - . ID=Physo143031.1;Parent=Physo143031;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 96956 98292 . + . ID=Physo143033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270023;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 96956 98292 . + . ID=Physo143033;Parent=Physo143033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 96956 97317 . + 0 ID=Physo143033;Parent=Physo143033;rank=1 scaffold_127 . exon 96956 97317 . + . ID=Physo143033.1;Parent=Physo143033;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 . CDS 97398 98292 . + 0 ID=Physo143033;Parent=Physo143033;rank=2 scaffold_127 ensembl protein_coding_gene 93762 95945 . + . ID=Physo158682;biotype=protein_coding;external_name=C_scaffold_127000002;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 93762 95945 . + . ID=Physo158682;Parent=Physo158682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 93762 95762 . + 0 ID=Physo158682;Parent=Physo158682;rank=1 scaffold_127 . exon 93762 95762 . + . ID=Physo158682.1;Parent=Physo158682;constitutive=1;rank=1 scaffold_127 . CDS 95802 95945 . + 0 ID=Physo158682;Parent=Physo158682;rank=2 scaffold_127 . exon 95802 95945 . + . ID=Physo158682.2;Parent=Physo158682;constitutive=1;rank=2 scaffold_127 . repeat_region 99099 99160 . ? . description=dust scaffold_127 . exon 97398 98292 . + . ID=Physo143033.2;Parent=Physo143033;constitutive=1;ensembl_phase=2;rank=2 scaffold_127 ensembl protein_coding_gene 98572 100165 . + . ID=Physo143034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270024;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 98572 100165 . + . ID=Physo143034;Parent=Physo143034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 98572 99093 . + 0 ID=Physo143034;Parent=Physo143034;rank=1 scaffold_127 . exon 98572 99093 . + . ID=Physo143034.1;Parent=Physo143034;constitutive=1;rank=1 scaffold_127 . CDS 99178 99748 . + 0 ID=Physo143034;Parent=Physo143034;rank=2 scaffold_127 . exon 99178 99748 . + . ID=Physo143034.2;Parent=Physo143034;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_127 . CDS 99854 100077 . + 0 ID=Physo143034;Parent=Physo143034;rank=3 scaffold_127 . exon 99854 100077 . + . ID=Physo143034.3;Parent=Physo143034;constitutive=1;ensembl_phase=1;rank=3 scaffold_127 . CDS 100133 100165 . + 0 ID=Physo143034;Parent=Physo143034;rank=4 scaffold_127 . exon 100133 100165 . + . ID=Physo143034.4;Parent=Physo143034;constitutive=1;rank=4 scaffold_127 . repeat_region 112724 112747 . ? . description=trf scaffold_127 . biological_region 113135 113139 0.999 + . logic_name=eponine scaffold_127 . biological_region 113194 113198 0.999 - . logic_name=eponine scaffold_127 . biological_region 113281 113284 0.999 - . logic_name=eponine scaffold_127 . repeat_region 115819 115875 . ? . description=trf scaffold_127 . biological_region 116028 116032 0.999 - . logic_name=eponine scaffold_127 . biological_region 116053 116056 0.999 - . logic_name=eponine scaffold_127 . biological_region 116114 116115 0.999 + . logic_name=eponine scaffold_127 . biological_region 116272 116273 0.999 + . logic_name=eponine scaffold_127 . biological_region 116357 116363 0.999 - . logic_name=eponine scaffold_127 ensembl protein_coding_gene 112002 115088 . + . ID=Physo143035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270025;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 112002 115088 . + . ID=Physo143035;Parent=Physo143035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . exon 112002 112364 . + . ID=Physo143035.1;Parent=Physo143035;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_127 . CDS 112045 112364 . + 0 ID=Physo143035;Parent=Physo143035;rank=1 scaffold_127 . CDS 112468 112660 . + 0 ID=Physo143035;Parent=Physo143035;rank=2 scaffold_127 . exon 112468 112660 . + . ID=Physo143035.2;Parent=Physo143035;constitutive=1;ensembl_phase=2;rank=2 scaffold_127 . CDS 112772 113511 . + 0 ID=Physo143035;Parent=Physo143035;rank=3 scaffold_127 . exon 112772 113511 . + . ID=Physo143035.3;Parent=Physo143035;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_127 . CDS 113681 114245 . + 0 ID=Physo143035;Parent=Physo143035;rank=4 scaffold_127 . exon 113681 114245 . + . ID=Physo143035.4;Parent=Physo143035;constitutive=1;ensembl_phase=2;rank=4 scaffold_127 . CDS 114321 114579 . + 0 ID=Physo143035;Parent=Physo143035;rank=5 scaffold_127 . exon 114321 114579 . + . ID=Physo143035.5;Parent=Physo143035;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_127 . CDS 114656 114754 . + 0 ID=Physo143035;Parent=Physo143035;rank=6 scaffold_127 . exon 114656 114754 . + . ID=Physo143035.6;Parent=Physo143035;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_127 . CDS 114834 114880 . + 0 ID=Physo143035;Parent=Physo143035;rank=7 scaffold_127 . exon 114834 114880 . + . ID=Physo143035.7;Parent=Physo143035;constitutive=1;ensembl_phase=1;rank=7 scaffold_127 . CDS 114947 114988 . + 0 ID=Physo143035;Parent=Physo143035;rank=8 scaffold_127 . exon 114947 114988 . + . ID=Physo143035.8;Parent=Physo143035;constitutive=1;rank=8 scaffold_127 . CDS 115086 115088 . + 0 ID=Physo143035;Parent=Physo143035;rank=9 scaffold_127 . exon 115086 115088 . + . ID=Physo143035.9;Parent=Physo143035;constitutive=1;rank=9 scaffold_127 ensembl protein_coding_gene 115292 117748 . - . ID=Physo143036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270026;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 115292 117748 . - . ID=Physo143036;Parent=Physo143036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . exon 115292 115933 . - . ID=Physo143036.6;Parent=Physo143036;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_127 . CDS 115301 115933 . - 0 ID=Physo143036;Parent=Physo143036;rank=6 scaffold_127 . CDS 115960 116455 . - 0 ID=Physo143036;Parent=Physo143036;rank=5 scaffold_127 . exon 115960 116455 . - . ID=Physo143036.5;Parent=Physo143036;constitutive=1;ensembl_phase=2;rank=5 scaffold_127 . CDS 116587 116729 . - 0 ID=Physo143036;Parent=Physo143036;rank=4 scaffold_127 . CDS 116800 116979 . - 0 ID=Physo143036;Parent=Physo143036;rank=3 scaffold_127 . CDS 117057 117465 . - 0 ID=Physo143036;Parent=Physo143036;rank=2 scaffold_127 . CDS 117531 117748 . - 0 ID=Physo143036;Parent=Physo143036;rank=1 scaffold_127 . repeat_region 116996 117028 . ? . description=dust scaffold_127 . repeat_region 116996 117028 . + . description=(CAGT)n scaffold_127 . repeat_region 123944 123993 . ? . description=dust scaffold_127 ensembl protein_coding_gene 117885 119137 . - . ID=Physo109531;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1270004;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 117885 119137 . - . ID=Physo109531;Parent=Physo109531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 117885 118134 . - 0 ID=Physo109531;Parent=Physo109531;rank=3 scaffold_127 . exon 117885 118134 . - . ID=Physo109531.3;Parent=Physo109531;constitutive=1;ensembl_phase=2;rank=3 scaffold_127 . CDS 118231 118329 . - 0 ID=Physo109531;Parent=Physo109531;rank=2 scaffold_127 . exon 118231 118329 . - . ID=Physo109531.2;Parent=Physo109531;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_127 . CDS 118428 119137 . - 0 ID=Physo109531;Parent=Physo109531;rank=1 scaffold_127 . exon 118428 119137 . - . ID=Physo109531.1;Parent=Physo109531;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 . exon 116587 116729 . - . ID=Physo143036.4;Parent=Physo143036;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_127 . exon 116800 116979 . - . ID=Physo143036.3;Parent=Physo143036;constitutive=1;rank=3 scaffold_127 . exon 117057 117465 . - . ID=Physo143036.2;Parent=Physo143036;constitutive=1;ensembl_phase=2;rank=2 scaffold_127 . exon 117531 117748 . - . ID=Physo143036.1;Parent=Physo143036;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 ensembl protein_coding_gene 119597 120210 . - . ID=Physo143038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270028;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 119597 120210 . - . ID=Physo143038;Parent=Physo143038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 119597 119955 . - 0 ID=Physo143038;Parent=Physo143038;rank=2 scaffold_127 . exon 119597 119955 . - . ID=Physo143038.2;Parent=Physo143038;constitutive=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 120129 120210 . - 0 ID=Physo143038;Parent=Physo143038;rank=1 scaffold_127 . exon 120129 120210 . - . ID=Physo143038.1;Parent=Physo143038;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 ensembl protein_coding_gene 122671 123597 . - . ID=Physo143039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270029;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 122671 123597 . - . ID=Physo143039;Parent=Physo143039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 122671 122985 . - 0 ID=Physo143039;Parent=Physo143039;rank=3 scaffold_127 . exon 122671 122985 . - . ID=Physo143039.3;Parent=Physo143039;constitutive=1;rank=3 scaffold_127 . CDS 123078 123221 . - 0 ID=Physo143039;Parent=Physo143039;rank=2 scaffold_127 . exon 123078 123221 . - . ID=Physo143039.2;Parent=Physo143039;constitutive=1;rank=2 scaffold_127 . CDS 123559 123597 . - 0 ID=Physo143039;Parent=Physo143039;rank=1 scaffold_127 . exon 123559 123597 . - . ID=Physo143039.1;Parent=Physo143039;constitutive=1;rank=1 scaffold_127 ensembl protein_coding_gene 124654 126813 . + . ID=Physo143040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270030;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 124654 126813 . + . ID=Physo143040;Parent=Physo143040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 124654 124725 . + 0 ID=Physo143040;Parent=Physo143040;rank=1 scaffold_127 . exon 124654 124725 . + . ID=Physo143040.1;Parent=Physo143040;constitutive=1;rank=1 scaffold_127 . CDS 124946 125652 . + 0 ID=Physo143040;Parent=Physo143040;rank=2 scaffold_127 . exon 124946 125652 . + . ID=Physo143040.2;Parent=Physo143040;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_127 . CDS 125694 125888 . + 0 ID=Physo143040;Parent=Physo143040;rank=3 scaffold_127 . exon 125694 125888 . + . ID=Physo143040.3;Parent=Physo143040;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_127 . CDS 125947 126106 . + 0 ID=Physo143040;Parent=Physo143040;rank=4 scaffold_127 . exon 125947 126106 . + . ID=Physo143040.4;Parent=Physo143040;constitutive=1;ensembl_phase=2;rank=4 scaffold_127 . CDS 126321 126729 . + 0 ID=Physo143040;Parent=Physo143040;rank=5 scaffold_127 . CDS 126797 126813 . + 0 ID=Physo143040;Parent=Physo143040;rank=6 scaffold_127 . biological_region 126539 126539 0.999 + . logic_name=eponine scaffold_127 . exon 126321 126729 . + . ID=Physo143040.5;Parent=Physo143040;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_127 . exon 126797 126813 . + . ID=Physo143040.6;Parent=Physo143040;constitutive=1;ensembl_phase=1;rank=6 scaffold_127 ensembl protein_coding_gene 129292 132672 . + . ID=Physo143041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270031;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 129292 132672 . + . ID=Physo143041;Parent=Physo143041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 129292 129351 . + 0 ID=Physo143041;Parent=Physo143041;rank=1 scaffold_127 . exon 129292 129351 . + . ID=Physo143041.1;Parent=Physo143041;constitutive=1;rank=1 scaffold_127 . CDS 129431 130299 . + 0 ID=Physo143041;Parent=Physo143041;rank=2 scaffold_127 . exon 129431 130299 . + . ID=Physo143041.2;Parent=Physo143041;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_127 . CDS 130371 131674 . + 0 ID=Physo143041;Parent=Physo143041;rank=3 scaffold_127 . exon 130371 131674 . + . ID=Physo143041.3;Parent=Physo143041;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_127 . CDS 132068 132672 . + 0 ID=Physo143041;Parent=Physo143041;rank=4 scaffold_127 . exon 132068 132672 . + . ID=Physo143041.4;Parent=Physo143041;constitutive=1;ensembl_phase=1;rank=4 scaffold_127 ensembl protein_coding_gene 135099 137467 . + . ID=Physo143042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270032;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 135099 137467 . + . ID=Physo143042;Parent=Physo143042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 135099 135160 . + 0 ID=Physo143042;Parent=Physo143042;rank=1 scaffold_127 . exon 135099 135160 . + . ID=Physo143042.1;Parent=Physo143042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_127 . CDS 135217 135647 . + 0 ID=Physo143042;Parent=Physo143042;rank=2 scaffold_127 . exon 135217 135647 . + . ID=Physo143042.2;Parent=Physo143042;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_127 . CDS 135690 137467 . + 0 ID=Physo143042;Parent=Physo143042;rank=3 scaffold_127 . exon 135690 137467 . + . ID=Physo143042.3;Parent=Physo143042;constitutive=1;ensembl_phase=1;rank=3 scaffold_127 . repeat_region 139208 145480 . ? . description=dust scaffold_127 . repeat_region 145481 149813 . ? . description=dust scaffold_127 . biological_region 153908 153915 0.999 + . logic_name=eponine scaffold_127 . biological_region 153963 153965 0.999 + . logic_name=eponine scaffold_127 . biological_region 153981 153984 0.999 - . logic_name=eponine scaffold_127 ensembl protein_coding_gene 151813 156181 . + . ID=Physo143043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270033;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 151813 156181 . + . ID=Physo143043;Parent=Physo143043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 151813 151863 . + 0 ID=Physo143043;Parent=Physo143043;rank=1 scaffold_127 . exon 151813 151863 . + . ID=Physo143043.1;Parent=Physo143043;constitutive=1;rank=1 scaffold_127 . CDS 152004 152521 . + 0 ID=Physo143043;Parent=Physo143043;rank=2 scaffold_127 . exon 152004 152521 . + . ID=Physo143043.2;Parent=Physo143043;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_127 . CDS 152638 152868 . + 0 ID=Physo143043;Parent=Physo143043;rank=3 scaffold_127 . exon 152638 152868 . + . ID=Physo143043.3;Parent=Physo143043;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_127 . CDS 152976 153104 . + 0 ID=Physo143043;Parent=Physo143043;rank=4 scaffold_127 . exon 152976 153104 . + . ID=Physo143043.4;Parent=Physo143043;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_127 . CDS 153247 153973 . + 0 ID=Physo143043;Parent=Physo143043;rank=5 scaffold_127 . exon 153247 153973 . + . ID=Physo143043.5;Parent=Physo143043;constitutive=1;ensembl_phase=2;rank=5 scaffold_127 . CDS 154276 154840 . + 0 ID=Physo143043;Parent=Physo143043;rank=6 scaffold_127 . exon 154276 154840 . + . ID=Physo143043.6;Parent=Physo143043;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_127 . CDS 154901 155806 . + 0 ID=Physo143043;Parent=Physo143043;rank=7 scaffold_127 . exon 154901 155806 . + . ID=Physo143043.7;Parent=Physo143043;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_127 . CDS 155862 156181 . + 0 ID=Physo143043;Parent=Physo143043;rank=8 scaffold_127 . repeat_region 157406 157459 . ? . description=trf scaffold_127 . repeat_region 157673 157766 . ? . description=trf scaffold_127 . repeat_region 159620 159669 . ? . description=dust scaffold_127 . repeat_region 159622 159662 . ? . description=trf scaffold_127 . repeat_region 159623 159669 . ? . description=trf scaffold_127 . repeat_region 159634 159686 . ? . description=trf scaffold_127 . repeat_region 159650 159669 . ? . description=trf scaffold_127 . repeat_region 164196 164646 . ? . description=dust scaffold_127 . repeat_region 164790 164832 . ? . description=trf scaffold_127 . exon 155862 156181 . + . ID=Physo143043.8;Parent=Physo143043;constitutive=1;ensembl_phase=1;rank=8 scaffold_127 ensembl protein_coding_gene 156515 158992 . - . ID=Physo143044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270034;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 156515 158992 . - . ID=Physo143044;Parent=Physo143044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 156515 158277 . - 0 ID=Physo143044;Parent=Physo143044;rank=2 scaffold_127 . exon 156515 158277 . - . ID=Physo143044.2;Parent=Physo143044;constitutive=1;ensembl_phase=1;rank=2 scaffold_127 . CDS 158344 158992 . - 0 ID=Physo143044;Parent=Physo143044;rank=1 scaffold_127 . exon 158344 158992 . - . ID=Physo143044.1;Parent=Physo143044;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_127 ensembl protein_coding_gene 163695 166322 . + . ID=Physo143045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270035;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 163695 166322 . + . ID=Physo143045;Parent=Physo143045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 163695 164186 . + 0 ID=Physo143045;Parent=Physo143045;rank=1 scaffold_127 . exon 163695 164186 . + . ID=Physo143045.1;Parent=Physo143045;constitutive=1;rank=1 scaffold_127 . CDS 165622 166154 . + 0 ID=Physo143045;Parent=Physo143045;rank=2 scaffold_127 . CDS 166295 166322 . + 0 ID=Physo143045;Parent=Physo143045;rank=3 scaffold_127 . exon 165622 166154 . + . ID=Physo143045.2;Parent=Physo143045;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_127 . exon 166295 166322 . + . ID=Physo143045.3;Parent=Physo143045;constitutive=1;ensembl_phase=2;rank=3 scaffold_127 ensembl protein_coding_gene 166511 166921 . - . ID=Physo143046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1270036;logic_name=jgi_physo1_1 scaffold_127 ensembl transcript 166511 166921 . - . ID=Physo143046;Parent=Physo143046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_127 . CDS 166511 166921 . - 0 ID=Physo143046;Parent=Physo143046;rank=1 scaffold_127 . exon 166511 166921 . - . ID=Physo143046.1;Parent=Physo143046;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_126 1 179190 scaffold_126 . repeat_region 80 543 . ? . description=trf scaffold_126 . repeat_region 633 2281 . ? . description=dust scaffold_126 . repeat_region 3616 3817 . + . description=Polinton-1_PI scaffold_126 . repeat_region 4954 4961 . ? . description=dust scaffold_126 . repeat_region 5597 6223 . + . description=Polinton-1_PI scaffold_126 . repeat_region 6785 6892 . + . description=Polinton-1_PI scaffold_126 . repeat_region 7062 7775 . + . description=Polinton-1_PI scaffold_126 . repeat_region 7910 8222 . - . description=Polinton-1_PI scaffold_126 . repeat_region 8272 8334 . ? . description=trf scaffold_126 . repeat_region 9039 9046 . ? . description=dust scaffold_126 . biological_region 11087 11090 0.999 - . logic_name=eponine scaffold_126 . biological_region 17624 17629 0.999 + . logic_name=eponine scaffold_126 . biological_region 17700 17703 0.999 - . logic_name=eponine scaffold_126 . biological_region 18068 18072 0.999 + . logic_name=eponine scaffold_126 . biological_region 18688 18692 0.999 - . logic_name=eponine scaffold_126 ensembl protein_coding_gene 16950 18994 . + . ID=Physo142955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260001;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 16950 18994 . + . ID=Physo142955;Parent=Physo142955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 16950 17144 . + 0 ID=Physo142955;Parent=Physo142955;rank=1 scaffold_126 . exon 16950 17144 . + . ID=Physo142955.1;Parent=Physo142955;constitutive=1;rank=1 scaffold_126 . CDS 17180 17590 . + 0 ID=Physo142955;Parent=Physo142955;rank=2 scaffold_126 . exon 17180 17590 . + . ID=Physo142955.2;Parent=Physo142955;constitutive=1;rank=2 scaffold_126 . CDS 17676 18275 . + 0 ID=Physo142955;Parent=Physo142955;rank=3 scaffold_126 . exon 17676 18275 . + . ID=Physo142955.3;Parent=Physo142955;constitutive=1;rank=3 scaffold_126 . CDS 18317 18320 . + 0 ID=Physo142955;Parent=Physo142955;rank=4 scaffold_126 . exon 18317 18320 . + . ID=Physo142955.4;Parent=Physo142955;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_126 . CDS 18427 18435 . + 0 ID=Physo142955;Parent=Physo142955;rank=5 scaffold_126 . exon 18427 18435 . + . ID=Physo142955.5;Parent=Physo142955;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_126 . CDS 18503 18699 . + 0 ID=Physo142955;Parent=Physo142955;rank=6 scaffold_126 . exon 18503 18994 . + . ID=Physo142955.6;Parent=Physo142955;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_126 ensembl protein_coding_gene 19167 21419 . - . ID=Physo142956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260002;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 19167 21419 . - . ID=Physo142956;Parent=Physo142956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 19167 21419 . - 0 ID=Physo142956;Parent=Physo142956;rank=1 scaffold_126 . exon 19167 21419 . - . ID=Physo142956.1;Parent=Physo142956;constitutive=1;rank=1 scaffold_126 . repeat_region 20034 20211 . ? . description=trf scaffold_126 . repeat_region 20058 20207 . ? . description=trf scaffold_126 . repeat_region 23862 23881 . ? . description=trf scaffold_126 ensembl protein_coding_gene 23138 23919 . - . ID=Physo142957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260003;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 23138 23919 . - . ID=Physo142957;Parent=Physo142957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 23138 23386 . - 0 ID=Physo142957;Parent=Physo142957;rank=2 scaffold_126 . exon 23138 23386 . - . ID=Physo142957.2;Parent=Physo142957;constitutive=1;rank=2 scaffold_126 . CDS 23440 23919 . - 0 ID=Physo142957;Parent=Physo142957;rank=1 scaffold_126 . exon 23440 23919 . - . ID=Physo142957.1;Parent=Physo142957;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 24463 27019 . - . ID=Physo142958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260004;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 24463 27019 . - . ID=Physo142958;Parent=Physo142958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 24463 25220 . - 0 ID=Physo142958;Parent=Physo142958;rank=2 scaffold_126 . exon 24463 25220 . - . ID=Physo142958.2;Parent=Physo142958;constitutive=1;ensembl_phase=1;rank=2 scaffold_126 . CDS 25444 27019 . - 0 ID=Physo142958;Parent=Physo142958;rank=1 scaffold_126 . exon 25444 27019 . - . ID=Physo142958.1;Parent=Physo142958;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_126 ensembl protein_coding_gene 27159 29026 . + . ID=Physo142959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260005;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 27159 29026 . + . ID=Physo142959;Parent=Physo142959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 27159 29026 . + . ID=Physo142959.1;Parent=Physo142959;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_126 . CDS 27518 28657 . + 0 ID=Physo142959;Parent=Physo142959;rank=1 scaffold_126 ensembl protein_coding_gene 29142 30644 . + . ID=Physo142960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260006;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 29142 30644 . + . ID=Physo142960;Parent=Physo142960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 29142 30644 . + 0 ID=Physo142960;Parent=Physo142960;rank=1 scaffold_126 . exon 29142 30644 . + . ID=Physo142960.1;Parent=Physo142960;constitutive=1;rank=1 scaffold_126 . biological_region 30504 30504 0.999 + . logic_name=eponine scaffold_126 . biological_region 32285 32288 0.999 + . logic_name=eponine scaffold_126 . biological_region 32369 32376 0.999 - . logic_name=eponine scaffold_126 . biological_region 32389 32390 0.999 - . logic_name=eponine scaffold_126 . biological_region 32481 32487 0.999 + . logic_name=eponine scaffold_126 . biological_region 32512 32515 0.999 - . logic_name=eponine scaffold_126 . biological_region 32534 32536 0.999 + . logic_name=eponine scaffold_126 . biological_region 37674 37676 0.999 - . logic_name=eponine scaffold_126 . biological_region 39797 39800 0.999 - . logic_name=eponine scaffold_126 ensembl protein_coding_gene 32038 36954 . + . ID=Physo142961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260007;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 32038 36954 . + . ID=Physo142961;Parent=Physo142961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 32038 36954 . + 0 ID=Physo142961;Parent=Physo142961;rank=1 scaffold_126 . exon 32038 36954 . + . ID=Physo142961.1;Parent=Physo142961;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 37241 39111 . + . ID=Physo142962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260008;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 37241 39111 . + . ID=Physo142962;Parent=Physo142962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 37241 37271 . + 0 ID=Physo142962;Parent=Physo142962;rank=1 scaffold_126 . exon 37241 37271 . + . ID=Physo142962.1;Parent=Physo142962;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_126 . CDS 37384 39067 . + 0 ID=Physo142962;Parent=Physo142962;rank=2 scaffold_126 . exon 37384 39067 . + . ID=Physo142962.2;Parent=Physo142962;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_126 . CDS 39090 39111 . + 0 ID=Physo142962;Parent=Physo142962;rank=3 scaffold_126 . exon 39090 39111 . + . ID=Physo142962.3;Parent=Physo142962;constitutive=1;ensembl_phase=2;rank=3 scaffold_126 ensembl protein_coding_gene 39231 40619 . - . ID=Physo142963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260009;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 39231 40619 . - . ID=Physo142963;Parent=Physo142963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 39231 40619 . - 0 ID=Physo142963;Parent=Physo142963;rank=1 scaffold_126 . exon 39231 40619 . - . ID=Physo142963.1;Parent=Physo142963;constitutive=1;rank=1 scaffold_126 . repeat_region 41753 41776 . ? . description=dust scaffold_126 ensembl protein_coding_gene 41078 50666 . + . ID=Physo158672;biotype=protein_coding;external_name=C_scaffold_126000001;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 41078 50666 . + . ID=Physo158672;Parent=Physo158672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 41078 41722 . + 0 ID=Physo158672;Parent=Physo158672;rank=1 scaffold_126 . exon 41078 41722 . + . ID=Physo158672.1;Parent=Physo158672;constitutive=1;rank=1 scaffold_126 . CDS 41807 42037 . + 0 ID=Physo158672;Parent=Physo158672;rank=2 scaffold_126 . exon 41807 42037 . + . ID=Physo158672.2;Parent=Physo158672;constitutive=1;rank=2 scaffold_126 . CDS 42533 42893 . + 0 ID=Physo158672;Parent=Physo158672;rank=3 scaffold_126 . exon 42533 42893 . + . ID=Physo158672.3;Parent=Physo158672;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_126 . CDS 42981 43146 . + 0 ID=Physo158672;Parent=Physo158672;rank=4 scaffold_126 . exon 42981 43146 . + . ID=Physo158672.4;Parent=Physo158672;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_126 . CDS 43535 43645 . + 0 ID=Physo158672;Parent=Physo158672;rank=5 scaffold_126 . exon 43535 43645 . + . ID=Physo158672.5;Parent=Physo158672;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_126 . CDS 43712 44124 . + 0 ID=Physo158672;Parent=Physo158672;rank=6 scaffold_126 . exon 43712 44124 . + . ID=Physo158672.6;Parent=Physo158672;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_126 . CDS 44193 44443 . + 0 ID=Physo158672;Parent=Physo158672;rank=7 scaffold_126 . exon 44193 44443 . + . ID=Physo158672.7;Parent=Physo158672;constitutive=1;ensembl_phase=1;rank=7 scaffold_126 . CDS 44511 44757 . + 0 ID=Physo158672;Parent=Physo158672;rank=8 scaffold_126 . exon 44511 44757 . + . ID=Physo158672.8;Parent=Physo158672;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_126 . CDS 44824 45251 . + 0 ID=Physo158672;Parent=Physo158672;rank=9 scaffold_126 . exon 44824 45251 . + . ID=Physo158672.9;Parent=Physo158672;constitutive=1;ensembl_phase=1;rank=9 scaffold_126 . CDS 45328 45390 . + 0 ID=Physo158672;Parent=Physo158672;rank=10 scaffold_126 . exon 45328 45390 . + . ID=Physo158672.10;Parent=Physo158672;constitutive=1;rank=10 scaffold_126 . CDS 45462 45527 . + 0 ID=Physo158672;Parent=Physo158672;rank=11 scaffold_126 . exon 45462 45527 . + . ID=Physo158672.11;Parent=Physo158672;constitutive=1;rank=11 scaffold_126 . CDS 45614 45763 . + 0 ID=Physo158672;Parent=Physo158672;rank=12 scaffold_126 . exon 45614 45763 . + . ID=Physo158672.12;Parent=Physo158672;constitutive=1;rank=12 scaffold_126 . CDS 45826 45894 . + 0 ID=Physo158672;Parent=Physo158672;rank=13 scaffold_126 . exon 45826 45894 . + . ID=Physo158672.13;Parent=Physo158672;constitutive=1;rank=13 scaffold_126 . CDS 45965 46122 . + 0 ID=Physo158672;Parent=Physo158672;rank=14 scaffold_126 . exon 45965 46122 . + . ID=Physo158672.14;Parent=Physo158672;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_126 . CDS 46335 46357 . + 0 ID=Physo158672;Parent=Physo158672;rank=15 scaffold_126 . exon 46335 46357 . + . ID=Physo158672.15;Parent=Physo158672;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=15 scaffold_126 . CDS 46435 46637 . + 0 ID=Physo158672;Parent=Physo158672;rank=16 scaffold_126 . exon 46435 46637 . + . ID=Physo158672.16;Parent=Physo158672;constitutive=1;ensembl_phase=1;rank=16 scaffold_126 . CDS 46680 47033 . + 0 ID=Physo158672;Parent=Physo158672;rank=17 scaffold_126 . exon 46680 47033 . + . ID=Physo158672.17;Parent=Physo158672;constitutive=1;rank=17 scaffold_126 . CDS 47136 47282 . + 0 ID=Physo158672;Parent=Physo158672;rank=18 scaffold_126 . exon 47136 47282 . + . ID=Physo158672.18;Parent=Physo158672;constitutive=1;rank=18 scaffold_126 . CDS 47351 47655 . + 0 ID=Physo158672;Parent=Physo158672;rank=19 scaffold_126 . exon 47351 47655 . + . ID=Physo158672.19;Parent=Physo158672;constitutive=1;ensembl_end_phase=2;rank=19 scaffold_126 . CDS 47755 48091 . + 0 ID=Physo158672;Parent=Physo158672;rank=20 scaffold_126 . exon 47755 48091 . + . ID=Physo158672.20;Parent=Physo158672;constitutive=1;ensembl_phase=2;rank=20 scaffold_126 . CDS 48166 48228 . + 0 ID=Physo158672;Parent=Physo158672;rank=21 scaffold_126 . exon 48166 48228 . + . ID=Physo158672.21;Parent=Physo158672;constitutive=1;rank=21 scaffold_126 . CDS 48299 48364 . + 0 ID=Physo158672;Parent=Physo158672;rank=22 scaffold_126 . exon 48299 48364 . + . ID=Physo158672.22;Parent=Physo158672;constitutive=1;rank=22 scaffold_126 . CDS 48432 48581 . + 0 ID=Physo158672;Parent=Physo158672;rank=23 scaffold_126 . exon 48432 48581 . + . ID=Physo158672.23;Parent=Physo158672;constitutive=1;rank=23 scaffold_126 . CDS 48654 48722 . + 0 ID=Physo158672;Parent=Physo158672;rank=24 scaffold_126 . exon 48654 48722 . + . ID=Physo158672.24;Parent=Physo158672;constitutive=1;rank=24 scaffold_126 . CDS 48788 48937 . + 0 ID=Physo158672;Parent=Physo158672;rank=25 scaffold_126 . exon 48788 48937 . + . ID=Physo158672.25;Parent=Physo158672;constitutive=1;rank=25 scaffold_126 . CDS 49125 50666 . + 0 ID=Physo158672;Parent=Physo158672;rank=26 scaffold_126 . exon 49125 50666 . + . ID=Physo158672.26;Parent=Physo158672;constitutive=1;rank=26 scaffold_126 . biological_region 53147 53150 0.999 - . logic_name=eponine scaffold_126 . biological_region 53284 53285 0.999 - . logic_name=eponine scaffold_126 . biological_region 55765 55766 0.999 + . logic_name=eponine scaffold_126 . biological_region 56031 56037 0.999 + . logic_name=eponine scaffold_126 . biological_region 56580 56582 0.999 - . logic_name=eponine scaffold_126 . repeat_region 56921 58794 . + . description=GypsyPi-1c_I-int scaffold_126 . biological_region 57407 57410 0.999 + . logic_name=eponine scaffold_126 . biological_region 57457 57460 0.999 + . logic_name=eponine scaffold_126 . biological_region 57573 57573 0.999 + . logic_name=eponine scaffold_126 . repeat_region 58903 59095 . + . description=GypsyPi-1c_I-int scaffold_126 . repeat_region 59096 59399 . + . description=GypsyPi-1c_LTR scaffold_126 ensembl protein_coding_gene 59698 61299 . - . ID=Physo123340;biotype=protein_coding;external_name=estExt_Genewise1.C_1260012;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 59698 61299 . - . ID=Physo123340;Parent=Physo123340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 59698 60966 . - 0 ID=Physo123340;Parent=Physo123340;rank=1 scaffold_126 . exon 59698 61167 . - . ID=Physo123340.2;Parent=Physo123340;constitutive=1;ensembl_phase=-1;rank=2 scaffold_126 ensembl protein_coding_gene 51017 53374 . - . ID=Physo142965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260011;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 51017 53374 . - . ID=Physo142965;Parent=Physo142965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 51017 51417 . - 0 ID=Physo142965;Parent=Physo142965;rank=6 scaffold_126 . exon 51017 51417 . - . ID=Physo142965.6;Parent=Physo142965;constitutive=1;ensembl_phase=1;rank=6 scaffold_126 . CDS 51484 51634 . - 0 ID=Physo142965;Parent=Physo142965;rank=5 scaffold_126 . exon 51484 51634 . - . ID=Physo142965.5;Parent=Physo142965;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_126 . CDS 51697 52323 . - 0 ID=Physo142965;Parent=Physo142965;rank=4 scaffold_126 . exon 51697 52323 . - . ID=Physo142965.4;Parent=Physo142965;constitutive=1;rank=4 scaffold_126 . CDS 52403 52464 . - 0 ID=Physo142965;Parent=Physo142965;rank=3 scaffold_126 . exon 52403 52464 . - . ID=Physo142965.3;Parent=Physo142965;constitutive=1;ensembl_phase=1;rank=3 scaffold_126 . CDS 52556 52610 . - 0 ID=Physo142965;Parent=Physo142965;rank=2 scaffold_126 . exon 52556 52610 . - . ID=Physo142965.2;Parent=Physo142965;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_126 . CDS 52688 53374 . - 0 ID=Physo142965;Parent=Physo142965;rank=1 scaffold_126 . exon 52688 53374 . - . ID=Physo142965.1;Parent=Physo142965;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 53799 54815 . + . ID=Physo142966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260012;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 53799 54815 . + . ID=Physo142966;Parent=Physo142966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 53799 54815 . + 0 ID=Physo142966;Parent=Physo142966;rank=1 scaffold_126 . exon 53799 54815 . + . ID=Physo142966.1;Parent=Physo142966;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 55750 57017 . + . ID=Physo158674;biotype=protein_coding;external_name=C_scaffold_126000003;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 55750 57017 . + . ID=Physo158674;Parent=Physo158674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 55750 55893 . + 0 ID=Physo158674;Parent=Physo158674;rank=1 scaffold_126 . exon 55750 55893 . + . ID=Physo158674.1;Parent=Physo158674;constitutive=1;rank=1 scaffold_126 . CDS 55976 56962 . + 0 ID=Physo158674;Parent=Physo158674;rank=2 scaffold_126 . exon 55976 56962 . + . ID=Physo158674.2;Parent=Physo158674;constitutive=1;rank=2 scaffold_126 . CDS 57009 57017 . + 0 ID=Physo158674;Parent=Physo158674;rank=3 scaffold_126 . exon 57009 57017 . + . ID=Physo158674.3;Parent=Physo158674;constitutive=1;rank=3 scaffold_126 . repeat_region 63777 63788 . ? . description=dust scaffold_126 . exon 61240 61299 . - . ID=Physo123340.1;Parent=Physo123340;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_126 ensembl protein_coding_gene 63807 67094 . - . ID=Physo142970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260016;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 63807 67094 . - . ID=Physo142970;Parent=Physo142970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 63807 67094 . - 0 ID=Physo142970;Parent=Physo142970;rank=1 scaffold_126 . exon 63807 67094 . - . ID=Physo142970.1;Parent=Physo142970;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 67861 70998 . + . ID=Physo142971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260017;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 67861 70998 . + . ID=Physo142971;Parent=Physo142971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 67861 70998 . + 0 ID=Physo142971;Parent=Physo142971;rank=1 scaffold_126 . exon 67861 70998 . + . ID=Physo142971.1;Parent=Physo142971;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 61768 63507 . + . ID=Physo158676;biotype=protein_coding;external_name=C_scaffold_126000005;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 61768 63507 . + . ID=Physo158676;Parent=Physo158676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 61768 61923 . + 0 ID=Physo158676;Parent=Physo158676;rank=1 scaffold_126 . exon 61768 61923 . + . ID=Physo158676.1;Parent=Physo158676;constitutive=1;rank=1 scaffold_126 . CDS 62084 63036 . + 0 ID=Physo158676;Parent=Physo158676;rank=2 scaffold_126 . exon 62084 63036 . + . ID=Physo158676.2;Parent=Physo158676;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_126 . CDS 63087 63507 . + 0 ID=Physo158676;Parent=Physo158676;rank=3 scaffold_126 . exon 63087 63507 . + . ID=Physo158676.3;Parent=Physo158676;constitutive=1;ensembl_phase=2;rank=3 scaffold_126 . biological_region 74196 74202 0.999 + . logic_name=eponine scaffold_126 . biological_region 74321 74325 0.999 - . logic_name=eponine scaffold_126 . biological_region 74340 74344 0.999 + . logic_name=eponine scaffold_126 . biological_region 74344 74350 0.999 - . logic_name=eponine scaffold_126 . biological_region 74363 74364 0.999 + . logic_name=eponine scaffold_126 . biological_region 74400 74402 0.999 + . logic_name=eponine scaffold_126 . repeat_region 75504 75551 . ? . description=trf scaffold_126 . repeat_region 76543 76584 . ? . description=trf scaffold_126 . repeat_region 76882 76962 . ? . description=trf scaffold_126 . biological_region 77340 77342 0.999 - . logic_name=eponine scaffold_126 . repeat_region 78551 78596 . ? . description=trf scaffold_126 ensembl protein_coding_gene 71710 72075 . - . ID=Physo142972;biotype=protein_coding;description=PsAvh257 [Source:UniProtKB/TrEMBL%3BAcc:E0W5M7];external_name=estExt_fgenesh1_pg.C_1260018;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 71710 72075 . - . ID=Physo142972;Parent=Physo142972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 71710 72075 . - 0 ID=Physo142972;Parent=Physo142972;rank=1 scaffold_126 . exon 71710 72075 . - . ID=Physo142972.1;Parent=Physo142972;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 74099 74530 . + . ID=Physo142973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260019;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 74099 74530 . + . ID=Physo142973;Parent=Physo142973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 74099 74110 . + 0 ID=Physo142973;Parent=Physo142973;rank=1 scaffold_126 . exon 74099 74110 . + . ID=Physo142973.1;Parent=Physo142973;constitutive=1;rank=1 scaffold_126 . CDS 74152 74310 . + 0 ID=Physo142973;Parent=Physo142973;rank=2 scaffold_126 . exon 74152 74310 . + . ID=Physo142973.2;Parent=Physo142973;constitutive=1;rank=2 scaffold_126 . CDS 74339 74530 . + 0 ID=Physo142973;Parent=Physo142973;rank=3 scaffold_126 . exon 74339 74530 . + . ID=Physo142973.3;Parent=Physo142973;constitutive=1;rank=3 scaffold_126 ensembl protein_coding_gene 78693 82201 . + . ID=Physo142974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260020;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 78693 82201 . + . ID=Physo142974;Parent=Physo142974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 78693 78852 . + 0 ID=Physo142974;Parent=Physo142974;rank=1 scaffold_126 . exon 78693 78852 . + . ID=Physo142974.1;Parent=Physo142974;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_126 . CDS 78956 79711 . + 0 ID=Physo142974;Parent=Physo142974;rank=2 scaffold_126 . exon 78956 79711 . + . ID=Physo142974.2;Parent=Physo142974;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_126 . CDS 80110 80880 . + 0 ID=Physo142974;Parent=Physo142974;rank=3 scaffold_126 . CDS 80969 81506 . + 0 ID=Physo142974;Parent=Physo142974;rank=4 scaffold_126 . CDS 81745 82201 . + 0 ID=Physo142974;Parent=Physo142974;rank=5 scaffold_126 . repeat_region 79673 79855 . - . description=GypsyPi-1c_LTR scaffold_126 . repeat_region 79977 80299 . - . description=GypsyPi-1c_I-int scaffold_126 . repeat_region 80868 84166 . - . description=GypsyPi-1c_I-int scaffold_126 . repeat_region 84163 84251 . ? . description=dust scaffold_126 . repeat_region 85101 85120 . ? . description=dust scaffold_126 . repeat_region 86272 86281 . ? . description=dust scaffold_126 . exon 80110 80880 . + . ID=Physo142974.3;Parent=Physo142974;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_126 . exon 80969 81506 . + . ID=Physo142974.4;Parent=Physo142974;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_126 . exon 81745 82201 . + . ID=Physo142974.5;Parent=Physo142974;constitutive=1;ensembl_phase=2;rank=5 scaffold_126 ensembl protein_coding_gene 82836 84040 . - . ID=Physo142975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260021;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 82836 84040 . - . ID=Physo142975;Parent=Physo142975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 82836 83963 . - 0 ID=Physo142975;Parent=Physo142975;rank=2 scaffold_126 . exon 82836 83963 . - . ID=Physo142975.2;Parent=Physo142975;constitutive=1;rank=2 scaffold_126 . CDS 84017 84040 . - 0 ID=Physo142975;Parent=Physo142975;rank=1 scaffold_126 . exon 84017 84040 . - . ID=Physo142975.1;Parent=Physo142975;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 85418 86645 . - . ID=Physo142976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260022;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 85418 86645 . - . ID=Physo142976;Parent=Physo142976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 85418 85982 . - . ID=Physo142976.2;Parent=Physo142976;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_126 . CDS 85521 85982 . - 0 ID=Physo142976;Parent=Physo142976;rank=2 scaffold_126 . CDS 86628 86645 . - 0 ID=Physo142976;Parent=Physo142976;rank=1 scaffold_126 . exon 86628 86645 . - . ID=Physo142976.1;Parent=Physo142976;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 86983 87568 . - . ID=Physo142977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260023;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 86983 87568 . - . ID=Physo142977;Parent=Physo142977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 86983 87270 . - . ID=Physo142977.2;Parent=Physo142977;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_126 . CDS 87104 87270 . - 0 ID=Physo142977;Parent=Physo142977;rank=2 scaffold_126 . CDS 87391 87550 . - 0 ID=Physo142977;Parent=Physo142977;rank=1 scaffold_126 . exon 87391 87568 . - . ID=Physo142977.1;Parent=Physo142977;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_126 ensembl protein_coding_gene 88023 89128 . + . ID=Physo142978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260024;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 88023 89128 . + . ID=Physo142978;Parent=Physo142978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 88023 88209 . + 0 ID=Physo142978;Parent=Physo142978;rank=1 scaffold_126 . exon 88023 88209 . + . ID=Physo142978.1;Parent=Physo142978;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_126 . CDS 88286 88411 . + 0 ID=Physo142978;Parent=Physo142978;rank=2 scaffold_126 . exon 88286 88411 . + . ID=Physo142978.2;Parent=Physo142978;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_126 . CDS 88497 89128 . + 0 ID=Physo142978;Parent=Physo142978;rank=3 scaffold_126 . exon 88497 89128 . + . ID=Physo142978.3;Parent=Physo142978;constitutive=1;ensembl_phase=1;rank=3 scaffold_126 . repeat_region 90585 90631 . ? . description=trf scaffold_126 . repeat_region 91891 91910 . ? . description=trf scaffold_126 . biological_region 92466 92470 0.999 + . logic_name=eponine scaffold_126 . biological_region 92574 92581 0.999 - . logic_name=eponine scaffold_126 . biological_region 95553 95557 0.999 + . logic_name=eponine scaffold_126 . biological_region 95585 95586 0.999 + . logic_name=eponine scaffold_126 . biological_region 95603 95607 0.999 + . logic_name=eponine scaffold_126 . biological_region 96358 96361 0.999 + . logic_name=eponine scaffold_126 . biological_region 96384 96386 0.999 - . logic_name=eponine scaffold_126 . biological_region 96709 96711 0.999 + . logic_name=eponine scaffold_126 . biological_region 96780 96783 0.999 + . logic_name=eponine scaffold_126 . biological_region 97217 97218 0.999 - . logic_name=eponine scaffold_126 . biological_region 97751 97755 0.999 + . logic_name=eponine scaffold_126 . biological_region 97806 97808 0.999 + . logic_name=eponine scaffold_126 . biological_region 97821 97824 0.999 + . logic_name=eponine scaffold_126 . biological_region 99094 99100 0.999 + . logic_name=eponine scaffold_126 ensembl protein_coding_gene 90347 91760 . + . ID=Physo109521;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1260001;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 90347 91760 . + . ID=Physo109521;Parent=Physo109521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 90347 90847 . + 0 ID=Physo109521;Parent=Physo109521;rank=1 scaffold_126 . exon 90347 90847 . + . ID=Physo109521.1;Parent=Physo109521;constitutive=1;rank=1 scaffold_126 . CDS 90933 91760 . + 0 ID=Physo109521;Parent=Physo109521;rank=2 scaffold_126 . exon 90933 91760 . + . ID=Physo109521.2;Parent=Physo109521;constitutive=1;rank=2 scaffold_126 ensembl protein_coding_gene 91929 92114 . - . ID=Physo123359;biotype=protein_coding;external_name=estExt_Genewise1.C_1260031;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 91929 92114 . - . ID=Physo123359;Parent=Physo123359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 91929 92114 . - 0 ID=Physo123359;Parent=Physo123359;rank=1 scaffold_126 . exon 91929 92114 . - . ID=Physo123359.1;Parent=Physo123359;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 92410 95315 . - . ID=Physo142980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260026;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 92410 95315 . - . ID=Physo142980;Parent=Physo142980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 92410 94802 . - 0 ID=Physo142980;Parent=Physo142980;rank=4 scaffold_126 . exon 92410 94802 . - . ID=Physo142980.4;Parent=Physo142980;constitutive=1;ensembl_phase=1;rank=4 scaffold_126 . CDS 94879 94981 . - 0 ID=Physo142980;Parent=Physo142980;rank=3 scaffold_126 . exon 94879 94981 . - . ID=Physo142980.3;Parent=Physo142980;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_126 . CDS 95080 95196 . - 0 ID=Physo142980;Parent=Physo142980;rank=2 scaffold_126 . exon 95080 95196 . - . ID=Physo142980.2;Parent=Physo142980;constitutive=1;rank=2 scaffold_126 . CDS 95292 95315 . - 0 ID=Physo142980;Parent=Physo142980;rank=1 scaffold_126 . exon 95292 95315 . - . ID=Physo142980.1;Parent=Physo142980;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 95508 96494 . - . ID=Physo142981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260027;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 95508 96494 . - . ID=Physo142981;Parent=Physo142981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 95508 96494 . - 0 ID=Physo142981;Parent=Physo142981;rank=1 scaffold_126 . exon 95508 96494 . - . ID=Physo142981.1;Parent=Physo142981;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 96805 98137 . + . ID=Physo142982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260028;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 96805 98137 . + . ID=Physo142982;Parent=Physo142982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 96805 96932 . + 0 ID=Physo142982;Parent=Physo142982;rank=1 scaffold_126 . exon 96805 96932 . + . ID=Physo142982.1;Parent=Physo142982;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_126 . CDS 97002 97144 . + 0 ID=Physo142982;Parent=Physo142982;rank=2 scaffold_126 . exon 97002 97144 . + . ID=Physo142982.2;Parent=Physo142982;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_126 . CDS 97224 97315 . + 0 ID=Physo142982;Parent=Physo142982;rank=3 scaffold_126 . exon 97224 97315 . + . ID=Physo142982.3;Parent=Physo142982;constitutive=1;ensembl_phase=1;rank=3 scaffold_126 . CDS 97391 97660 . + 0 ID=Physo142982;Parent=Physo142982;rank=4 scaffold_126 . exon 97391 97660 . + . ID=Physo142982.4;Parent=Physo142982;constitutive=1;rank=4 scaffold_126 . CDS 97730 98137 . + 0 ID=Physo142982;Parent=Physo142982;rank=5 scaffold_126 . exon 97730 98137 . + . ID=Physo142982.5;Parent=Physo142982;constitutive=1;rank=5 scaffold_126 ensembl protein_coding_gene 98739 100340 . + . ID=Physo142983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260029;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 98739 100340 . + . ID=Physo142983;Parent=Physo142983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 98739 100340 . + 0 ID=Physo142983;Parent=Physo142983;rank=1 scaffold_126 . exon 98739 100340 . + . ID=Physo142983.1;Parent=Physo142983;constitutive=1;rank=1 scaffold_126 . repeat_region 102606 102627 . ? . description=dust scaffold_126 . repeat_region 103076 103100 . ? . description=dust scaffold_126 . repeat_region 104994 105003 . ? . description=dust scaffold_126 . repeat_region 109246 109255 . ? . description=dust scaffold_126 ensembl protein_coding_gene 104757 105754 . + . ID=Physo109522;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1260002;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 104757 105754 . + . ID=Physo109522;Parent=Physo109522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 104757 104913 . + . ID=Physo109522.1;Parent=Physo109522;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_126 . CDS 104898 104913 . + 0 ID=Physo109522;Parent=Physo109522;rank=1 scaffold_126 . CDS 105288 105754 . + 0 ID=Physo109522;Parent=Physo109522;rank=2 scaffold_126 . exon 105288 105754 . + . ID=Physo109522.2;Parent=Physo109522;constitutive=1;ensembl_phase=1;rank=2 scaffold_126 ensembl protein_coding_gene 108685 109475 . + . ID=Physo109523;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1260003;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 108685 109475 . + . ID=Physo109523;Parent=Physo109523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 108685 108825 . + 0 ID=Physo109523;Parent=Physo109523;rank=1 scaffold_126 . exon 108685 108825 . + . ID=Physo109523.1;Parent=Physo109523;constitutive=1;rank=1 scaffold_126 . CDS 108939 109228 . + 0 ID=Physo109523;Parent=Physo109523;rank=2 scaffold_126 . exon 108939 109228 . + . ID=Physo109523.2;Parent=Physo109523;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_126 . CDS 109298 109369 . + 0 ID=Physo109523;Parent=Physo109523;rank=3 scaffold_126 . exon 109298 109369 . + . ID=Physo109523.3;Parent=Physo109523;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_126 . CDS 109412 109475 . + 0 ID=Physo109523;Parent=Physo109523;rank=4 scaffold_126 . exon 109412 109475 . + . ID=Physo109523.4;Parent=Physo109523;constitutive=1;ensembl_phase=2;rank=4 scaffold_126 ensembl protein_coding_gene 100363 102605 . - . ID=Physo142984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260030;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 100363 102605 . - . ID=Physo142984;Parent=Physo142984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 100363 101294 . - . ID=Physo142984.5;Parent=Physo142984;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_126 . CDS 100470 101294 . - 0 ID=Physo142984;Parent=Physo142984;rank=5 scaffold_126 . CDS 101372 101929 . - 0 ID=Physo142984;Parent=Physo142984;rank=4 scaffold_126 . exon 101372 101929 . - . ID=Physo142984.4;Parent=Physo142984;constitutive=1;rank=4 scaffold_126 . CDS 102016 102115 . - 0 ID=Physo142984;Parent=Physo142984;rank=3 scaffold_126 . exon 102016 102115 . - . ID=Physo142984.3;Parent=Physo142984;constitutive=1;ensembl_phase=2;rank=3 scaffold_126 . CDS 102190 102302 . - 0 ID=Physo142984;Parent=Physo142984;rank=2 scaffold_126 . exon 102190 102302 . - . ID=Physo142984.2;Parent=Physo142984;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_126 . CDS 102384 102605 . - 0 ID=Physo142984;Parent=Physo142984;rank=1 scaffold_126 . exon 102384 102605 . - . ID=Physo142984.1;Parent=Physo142984;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 105946 108461 . + . ID=Physo142986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260032;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 105946 108461 . + . ID=Physo142986;Parent=Physo142986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 105946 106103 . + 0 ID=Physo142986;Parent=Physo142986;rank=1 scaffold_126 . exon 105946 106103 . + . ID=Physo142986.1;Parent=Physo142986;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_126 . CDS 106181 106239 . + 0 ID=Physo142986;Parent=Physo142986;rank=2 scaffold_126 . exon 106181 106239 . + . ID=Physo142986.2;Parent=Physo142986;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_126 . CDS 106315 108461 . + 0 ID=Physo142986;Parent=Physo142986;rank=3 scaffold_126 . exon 106315 108461 . + . ID=Physo142986.3;Parent=Physo142986;constitutive=1;ensembl_phase=1;rank=3 scaffold_126 . biological_region 112830 112834 0.999 + . logic_name=eponine scaffold_126 . biological_region 112862 112869 0.999 + . logic_name=eponine scaffold_126 . biological_region 112872 112873 0.999 - . logic_name=eponine scaffold_126 . biological_region 114640 114641 0.999 - . logic_name=eponine scaffold_126 . repeat_region 117369 117397 . ? . description=trf scaffold_126 . biological_region 119412 119417 0.999 - . logic_name=eponine scaffold_126 ensembl protein_coding_gene 109575 111631 . + . ID=Physo142988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260034;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 109575 111631 . + . ID=Physo142988;Parent=Physo142988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 109575 110337 . + . ID=Physo142988.1;Parent=Physo142988;constitutive=1;ensembl_phase=-1;rank=1 scaffold_126 . CDS 109648 110337 . + 0 ID=Physo142988;Parent=Physo142988;rank=1 scaffold_126 . CDS 110451 110455 . + 0 ID=Physo142988;Parent=Physo142988;rank=2 scaffold_126 . exon 110451 110455 . + . ID=Physo142988.2;Parent=Physo142988;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_126 . CDS 110534 110691 . + 0 ID=Physo142988;Parent=Physo142988;rank=3 scaffold_126 . exon 110534 110691 . + . ID=Physo142988.3;Parent=Physo142988;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_126 . CDS 110944 111138 . + 0 ID=Physo142988;Parent=Physo142988;rank=4 scaffold_126 . exon 110944 111138 . + . ID=Physo142988.4;Parent=Physo142988;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_126 . CDS 111366 111631 . + 0 ID=Physo142988;Parent=Physo142988;rank=5 scaffold_126 . exon 111366 111631 . + . ID=Physo142988.5;Parent=Physo142988;constitutive=1;ensembl_phase=1;rank=5 scaffold_126 ensembl protein_coding_gene 112733 115375 . - . ID=Physo142989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260035;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 112733 115375 . - . ID=Physo142989;Parent=Physo142989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 112733 115375 . - 0 ID=Physo142989;Parent=Physo142989;rank=1 scaffold_126 . exon 112733 115375 . - . ID=Physo142989.1;Parent=Physo142989;constitutive=1;rank=1 scaffold_126 . repeat_region 123440 123449 . ? . description=dust scaffold_126 ensembl protein_coding_gene 123017 123626 . - . ID=Physo123381;biotype=protein_coding;external_name=estExt_Genewise1.C_1260053;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 123017 123626 . - . ID=Physo123381;Parent=Physo123381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 123017 123370 . - 0 ID=Physo123381;Parent=Physo123381;rank=2 scaffold_126 . exon 123017 123370 . - . ID=Physo123381.2;Parent=Physo123381;constitutive=1;rank=2 scaffold_126 . CDS 123453 123626 . - 0 ID=Physo123381;Parent=Physo123381;rank=1 scaffold_126 . exon 123453 123626 . - . ID=Physo123381.1;Parent=Physo123381;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 120001 122622 . + . ID=Physo142990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260036;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 120001 122622 . + . ID=Physo142990;Parent=Physo142990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 120001 122622 . + 0 ID=Physo142990;Parent=Physo142990;rank=1 scaffold_126 . exon 120001 122622 . + . ID=Physo142990.1;Parent=Physo142990;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 123643 123945 . - . ID=Physo142991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260037;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 123643 123945 . - . ID=Physo142991;Parent=Physo142991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 123643 123945 . - 0 ID=Physo142991;Parent=Physo142991;rank=1 scaffold_126 . exon 123643 123945 . - . ID=Physo142991.1;Parent=Physo142991;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 126022 127062 . + . ID=Physo142992;biotype=protein_coding;description=PsAvh286 [Source:UniProtKB/TrEMBL%3BAcc:E0W5M8];external_name=estExt_fgenesh1_pg.C_1260038;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 126022 127062 . + . ID=Physo142992;Parent=Physo142992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 126022 127062 . + 0 ID=Physo142992;Parent=Physo142992;rank=1 scaffold_126 . exon 126022 127062 . + . ID=Physo142992.1;Parent=Physo142992;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 128023 128520 . + . ID=Physo142993;biotype=protein_coding;description=PsAvh287 [Source:UniProtKB/TrEMBL%3BAcc:E0W5M9];external_name=estExt_fgenesh1_pg.C_1260039;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 128023 128520 . + . ID=Physo142993;Parent=Physo142993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 128023 128520 . + 0 ID=Physo142993;Parent=Physo142993;rank=1 scaffold_126 . exon 128023 128520 . + . ID=Physo142993.1;Parent=Physo142993;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 128743 130052 . + . ID=Physo142994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260040;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 128743 130052 . + . ID=Physo142994;Parent=Physo142994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 128743 129351 . + 0 ID=Physo142994;Parent=Physo142994;rank=1 scaffold_126 . exon 128743 129351 . + . ID=Physo142994.1;Parent=Physo142994;constitutive=1;rank=1 scaffold_126 . CDS 129441 129556 . + 0 ID=Physo142994;Parent=Physo142994;rank=2 scaffold_126 . CDS 129620 129737 . + 0 ID=Physo142994;Parent=Physo142994;rank=3 scaffold_126 . CDS 129808 129977 . + 0 ID=Physo142994;Parent=Physo142994;rank=4 scaffold_126 . CDS 130043 130052 . + 0 ID=Physo142994;Parent=Physo142994;rank=5 scaffold_126 . biological_region 131635 131641 0.999 + . logic_name=eponine scaffold_126 . biological_region 131695 131698 0.999 - . logic_name=eponine scaffold_126 . biological_region 131746 131750 0.999 - . logic_name=eponine scaffold_126 . biological_region 133334 133334 0.999 + . logic_name=eponine scaffold_126 . repeat_region 134464 134499 . ? . description=trf scaffold_126 . biological_region 135449 135450 0.999 - . logic_name=eponine scaffold_126 . biological_region 135867 135870 0.999 - . logic_name=eponine scaffold_126 . biological_region 135869 135871 0.999 + . logic_name=eponine scaffold_126 . biological_region 135989 135990 0.999 - . logic_name=eponine scaffold_126 . biological_region 136007 136010 0.999 - . logic_name=eponine scaffold_126 . biological_region 136020 136021 0.999 - . logic_name=eponine scaffold_126 . biological_region 136270 136271 0.999 - . logic_name=eponine scaffold_126 . biological_region 136944 136949 0.999 + . logic_name=eponine scaffold_126 . biological_region 139148 139149 0.999 - . logic_name=eponine scaffold_126 ensembl protein_coding_gene 135501 136376 . + . ID=Physo109524;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1260004;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 135501 136376 . + . ID=Physo109524;Parent=Physo109524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 135501 136376 . + 0 ID=Physo109524;Parent=Physo109524;rank=1 scaffold_126 . exon 135501 136376 . + . ID=Physo109524.1;Parent=Physo109524;constitutive=1;rank=1 scaffold_126 . exon 129441 129556 . + . ID=Physo142994.2;Parent=Physo142994;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_126 . exon 129620 129737 . + . ID=Physo142994.3;Parent=Physo142994;constitutive=1;ensembl_phase=2;rank=3 scaffold_126 . exon 129808 129977 . + . ID=Physo142994.4;Parent=Physo142994;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_126 . exon 130043 130052 . + . ID=Physo142994.5;Parent=Physo142994;constitutive=1;ensembl_phase=2;rank=5 scaffold_126 ensembl protein_coding_gene 132738 133998 . + . ID=Physo142996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260042;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 132738 133998 . + . ID=Physo142996;Parent=Physo142996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 132738 132893 . + 0 ID=Physo142996;Parent=Physo142996;rank=1 scaffold_126 . exon 132738 132893 . + . ID=Physo142996.1;Parent=Physo142996;constitutive=1;rank=1 scaffold_126 . CDS 132953 133108 . + 0 ID=Physo142996;Parent=Physo142996;rank=2 scaffold_126 . exon 132953 133108 . + . ID=Physo142996.2;Parent=Physo142996;constitutive=1;rank=2 scaffold_126 . CDS 133180 133536 . + 0 ID=Physo142996;Parent=Physo142996;rank=3 scaffold_126 . exon 133180 133536 . + . ID=Physo142996.3;Parent=Physo142996;constitutive=1;rank=3 scaffold_126 . CDS 133611 133746 . + 0 ID=Physo142996;Parent=Physo142996;rank=4 scaffold_126 . exon 133611 133746 . + . ID=Physo142996.4;Parent=Physo142996;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_126 . CDS 133829 133998 . + 0 ID=Physo142996;Parent=Physo142996;rank=5 scaffold_126 . exon 133829 133998 . + . ID=Physo142996.5;Parent=Physo142996;constitutive=1;ensembl_phase=1;rank=5 scaffold_126 ensembl protein_coding_gene 134285 135091 . - . ID=Physo142997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260043;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 134285 135091 . - . ID=Physo142997;Parent=Physo142997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 134285 134367 . - 0 ID=Physo142997;Parent=Physo142997;rank=5 scaffold_126 . exon 134285 134367 . - . ID=Physo142997.5;Parent=Physo142997;constitutive=1;ensembl_phase=1;rank=5 scaffold_126 . CDS 134460 134531 . - 0 ID=Physo142997;Parent=Physo142997;rank=4 scaffold_126 . exon 134460 134531 . - . ID=Physo142997.4;Parent=Physo142997;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_126 . CDS 134617 134769 . - 0 ID=Physo142997;Parent=Physo142997;rank=3 scaffold_126 . exon 134617 134769 . - . ID=Physo142997.3;Parent=Physo142997;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_126 . CDS 134843 134942 . - 0 ID=Physo142997;Parent=Physo142997;rank=2 scaffold_126 . exon 134843 134942 . - . ID=Physo142997.2;Parent=Physo142997;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_126 . CDS 135041 135091 . - 0 ID=Physo142997;Parent=Physo142997;rank=1 scaffold_126 . exon 135041 135091 . - . ID=Physo142997.1;Parent=Physo142997;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 136492 139270 . - . ID=Physo142999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260045;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 136492 139270 . - . ID=Physo142999;Parent=Physo142999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 136492 137736 . - . ID=Physo142999.6;Parent=Physo142999;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_126 . CDS 136493 137736 . - 0 ID=Physo142999;Parent=Physo142999;rank=6 scaffold_126 . CDS 137946 138065 . - 0 ID=Physo142999;Parent=Physo142999;rank=5 scaffold_126 . exon 137946 138065 . - . ID=Physo142999.5;Parent=Physo142999;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_126 . CDS 138228 138322 . - 0 ID=Physo142999;Parent=Physo142999;rank=4 scaffold_126 . exon 138228 138322 . - . ID=Physo142999.4;Parent=Physo142999;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_126 . CDS 138408 138543 . - 0 ID=Physo142999;Parent=Physo142999;rank=3 scaffold_126 . exon 138408 138543 . - . ID=Physo142999.3;Parent=Physo142999;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_126 . CDS 138619 138948 . - 0 ID=Physo142999;Parent=Physo142999;rank=2 scaffold_126 . exon 138619 138948 . - . ID=Physo142999.2;Parent=Physo142999;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_126 . CDS 139042 139270 . - 0 ID=Physo142999;Parent=Physo142999;rank=1 scaffold_126 . exon 139042 139270 . - . ID=Physo142999.1;Parent=Physo142999;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_126 ensembl protein_coding_gene 130276 132393 . - . ID=Physo158679;biotype=protein_coding;external_name=C_scaffold_126000008;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 130276 132393 . - . ID=Physo158679;Parent=Physo158679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 130276 130356 . - 0 ID=Physo158679;Parent=Physo158679;rank=8 scaffold_126 . exon 130276 130356 . - . ID=Physo158679.8;Parent=Physo158679;constitutive=1;rank=8 scaffold_126 . CDS 130445 130593 . - 0 ID=Physo158679;Parent=Physo158679;rank=7 scaffold_126 . exon 130445 130593 . - . ID=Physo158679.7;Parent=Physo158679;constitutive=1;ensembl_phase=1;rank=7 scaffold_126 . CDS 130633 130938 . - 0 ID=Physo158679;Parent=Physo158679;rank=6 scaffold_126 . exon 130633 130938 . - . ID=Physo158679.6;Parent=Physo158679;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_126 . CDS 131004 131079 . - 0 ID=Physo158679;Parent=Physo158679;rank=5 scaffold_126 . exon 131004 131079 . - . ID=Physo158679.5;Parent=Physo158679;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_126 . CDS 131122 131801 . - 0 ID=Physo158679;Parent=Physo158679;rank=4 scaffold_126 . exon 131122 131801 . - . ID=Physo158679.4;Parent=Physo158679;constitutive=1;ensembl_phase=1;rank=4 scaffold_126 . CDS 131865 131955 . - 0 ID=Physo158679;Parent=Physo158679;rank=3 scaffold_126 . exon 131865 131955 . - . ID=Physo158679.3;Parent=Physo158679;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_126 . CDS 132041 132147 . - 0 ID=Physo158679;Parent=Physo158679;rank=2 scaffold_126 . exon 132041 132147 . - . ID=Physo158679.2;Parent=Physo158679;constitutive=1;ensembl_phase=1;rank=2 scaffold_126 . CDS 132225 132393 . - 0 ID=Physo158679;Parent=Physo158679;rank=1 scaffold_126 . exon 132225 132393 . - . ID=Physo158679.1;Parent=Physo158679;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_126 . repeat_region 146916 146936 . ? . description=dust scaffold_126 ensembl protein_coding_gene 141071 141970 . + . ID=Physo109525;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1260005;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 141071 141970 . + . ID=Physo109525;Parent=Physo109525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 141071 141102 . + . ID=Physo109525.1;Parent=Physo109525;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_126 . CDS 141352 141759 . + 0 ID=Physo109525;Parent=Physo109525;rank=1 scaffold_126 . exon 141352 141970 . + . ID=Physo109525.2;Parent=Physo109525;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_126 ensembl protein_coding_gene 146516 147047 . + . ID=Physo109527;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1260007;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 146516 147047 . + . ID=Physo109527;Parent=Physo109527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 146516 146886 . + . ID=Physo109527.1;Parent=Physo109527;constitutive=1;ensembl_phase=-1;rank=1 scaffold_126 . CDS 146542 146886 . + 0 ID=Physo109527;Parent=Physo109527;rank=1 scaffold_126 . CDS 146976 147047 . + 0 ID=Physo109527;Parent=Physo109527;rank=2 scaffold_126 . exon 146976 147047 . + . ID=Physo109527.2;Parent=Physo109527;constitutive=1;rank=2 scaffold_126 ensembl protein_coding_gene 145538 146071 . + . ID=Physo123392;biotype=protein_coding;external_name=estExt_Genewise1.C_1260064;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 145538 146071 . + . ID=Physo123392;Parent=Physo123392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 145538 146071 . + 0 ID=Physo123392;Parent=Physo123392;rank=1 scaffold_126 . exon 145538 146071 . + . ID=Physo123392.1;Parent=Physo123392;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 139419 140860 . - . ID=Physo143000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260046;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 139419 140860 . - . ID=Physo143000;Parent=Physo143000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 139419 139548 . - 0 ID=Physo143000;Parent=Physo143000;rank=7 scaffold_126 . exon 139419 139548 . - . ID=Physo143000.7;Parent=Physo143000;constitutive=1;ensembl_phase=2;rank=7 scaffold_126 . CDS 139619 140042 . - 0 ID=Physo143000;Parent=Physo143000;rank=6 scaffold_126 . exon 139619 140042 . - . ID=Physo143000.6;Parent=Physo143000;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_126 . CDS 140132 140253 . - 0 ID=Physo143000;Parent=Physo143000;rank=5 scaffold_126 . exon 140132 140253 . - . ID=Physo143000.5;Parent=Physo143000;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_126 . CDS 140336 140394 . - 0 ID=Physo143000;Parent=Physo143000;rank=4 scaffold_126 . exon 140336 140394 . - . ID=Physo143000.4;Parent=Physo143000;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_126 . CDS 140474 140527 . - 0 ID=Physo143000;Parent=Physo143000;rank=3 scaffold_126 . exon 140474 140527 . - . ID=Physo143000.3;Parent=Physo143000;constitutive=1;rank=3 scaffold_126 . CDS 140604 140731 . - 0 ID=Physo143000;Parent=Physo143000;rank=2 scaffold_126 . exon 140604 140731 . - . ID=Physo143000.2;Parent=Physo143000;constitutive=1;ensembl_phase=1;rank=2 scaffold_126 . CDS 140761 140860 . - 0 ID=Physo143000;Parent=Physo143000;rank=1 scaffold_126 . exon 140761 140860 . - . ID=Physo143000.1;Parent=Physo143000;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_126 ensembl protein_coding_gene 142634 144402 . - . ID=Physo143002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260048;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 142634 144402 . - . ID=Physo143002;Parent=Physo143002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 142634 143134 . - 0 ID=Physo143002;Parent=Physo143002;rank=6 scaffold_126 . exon 142634 143134 . - . ID=Physo143002.6;Parent=Physo143002;constitutive=1;rank=6 scaffold_126 . CDS 143214 143404 . - 0 ID=Physo143002;Parent=Physo143002;rank=5 scaffold_126 . exon 143214 143404 . - . ID=Physo143002.5;Parent=Physo143002;constitutive=1;ensembl_phase=1;rank=5 scaffold_126 . CDS 143522 143858 . - 0 ID=Physo143002;Parent=Physo143002;rank=4 scaffold_126 . exon 143522 143858 . - . ID=Physo143002.4;Parent=Physo143002;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_126 . CDS 143925 144133 . - 0 ID=Physo143002;Parent=Physo143002;rank=3 scaffold_126 . exon 143925 144133 . - . ID=Physo143002.3;Parent=Physo143002;constitutive=1;ensembl_phase=1;rank=3 scaffold_126 . CDS 144242 144335 . - 0 ID=Physo143002;Parent=Physo143002;rank=2 scaffold_126 . exon 144242 144335 . - . ID=Physo143002.2;Parent=Physo143002;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_126 . CDS 144382 144402 . - 0 ID=Physo143002;Parent=Physo143002;rank=1 scaffold_126 . exon 144382 144402 . - . ID=Physo143002.1;Parent=Physo143002;constitutive=1;rank=1 scaffold_126 ensembl protein_coding_gene 147205 153464 . - . ID=Physo143005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260051;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 147205 153464 . - . ID=Physo143005;Parent=Physo143005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 147205 147254 . - . ID=Physo143005.4;Parent=Physo143005;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_126 . CDS 147207 147254 . - 0 ID=Physo143005;Parent=Physo143005;rank=4 scaffold_126 . CDS 147336 147434 . - 0 ID=Physo143005;Parent=Physo143005;rank=3 scaffold_126 . exon 147336 147434 . - . ID=Physo143005.3;Parent=Physo143005;constitutive=1;rank=3 scaffold_126 . CDS 147493 148203 . - 0 ID=Physo143005;Parent=Physo143005;rank=2 scaffold_126 . exon 147493 148203 . - . ID=Physo143005.2;Parent=Physo143005;constitutive=1;rank=2 scaffold_126 . CDS 148347 153464 . - 0 ID=Physo143005;Parent=Physo143005;rank=1 scaffold_126 . exon 148347 153464 . - . ID=Physo143005.1;Parent=Physo143005;constitutive=1;rank=1 scaffold_126 . biological_region 152893 152897 0.999 + . logic_name=eponine scaffold_126 . biological_region 152990 152992 0.999 - . logic_name=eponine scaffold_126 . biological_region 153164 153168 0.999 + . logic_name=eponine scaffold_126 . biological_region 153238 153243 0.999 - . logic_name=eponine scaffold_126 . biological_region 153245 153247 0.999 + . logic_name=eponine scaffold_126 . biological_region 153312 153317 0.999 + . logic_name=eponine scaffold_126 . biological_region 153316 153324 0.999 - . logic_name=eponine scaffold_126 . biological_region 153338 153342 0.999 - . logic_name=eponine scaffold_126 . biological_region 153421 153423 0.999 - . logic_name=eponine scaffold_126 . biological_region 154131 154132 0.999 + . logic_name=eponine scaffold_126 . biological_region 155539 155540 0.999 - . logic_name=eponine scaffold_126 . repeat_region 158758 158786 . ? . description=trf scaffold_126 ensembl protein_coding_gene 153759 154585 . - . ID=Physo143006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260052;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 153759 154585 . - . ID=Physo143006;Parent=Physo143006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . exon 153759 153930 . - . ID=Physo143006.4;Parent=Physo143006;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_126 . CDS 153853 153930 . - 0 ID=Physo143006;Parent=Physo143006;rank=4 scaffold_126 . CDS 153999 154067 . - 0 ID=Physo143006;Parent=Physo143006;rank=3 scaffold_126 . exon 153999 154067 . - . ID=Physo143006.3;Parent=Physo143006;constitutive=1;rank=3 scaffold_126 . CDS 154138 154222 . - 0 ID=Physo143006;Parent=Physo143006;rank=2 scaffold_126 . exon 154138 154222 . - . ID=Physo143006.2;Parent=Physo143006;constitutive=1;ensembl_phase=2;rank=2 scaffold_126 . CDS 154310 154551 . - 0 ID=Physo143006;Parent=Physo143006;rank=1 scaffold_126 . exon 154310 154585 . - . ID=Physo143006.1;Parent=Physo143006;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_126 ensembl protein_coding_gene 154966 158759 . + . ID=Physo143007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260053;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 154966 158759 . + . ID=Physo143007;Parent=Physo143007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 154966 155145 . + 0 ID=Physo143007;Parent=Physo143007;rank=1 scaffold_126 . exon 154966 155145 . + . ID=Physo143007.1;Parent=Physo143007;constitutive=1;rank=1 scaffold_126 . CDS 155235 155952 . + 0 ID=Physo143007;Parent=Physo143007;rank=2 scaffold_126 . exon 155235 155952 . + . ID=Physo143007.2;Parent=Physo143007;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_126 . CDS 156031 156548 . + 0 ID=Physo143007;Parent=Physo143007;rank=3 scaffold_126 . exon 156031 156548 . + . ID=Physo143007.3;Parent=Physo143007;constitutive=1;ensembl_phase=1;rank=3 scaffold_126 . CDS 156632 156753 . + 0 ID=Physo143007;Parent=Physo143007;rank=4 scaffold_126 . exon 156632 156753 . + . ID=Physo143007.4;Parent=Physo143007;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_126 . CDS 157038 157145 . + 0 ID=Physo143007;Parent=Physo143007;rank=5 scaffold_126 . exon 157038 157145 . + . ID=Physo143007.5;Parent=Physo143007;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_126 . CDS 157225 157295 . + 0 ID=Physo143007;Parent=Physo143007;rank=6 scaffold_126 . exon 157225 157295 . + . ID=Physo143007.6;Parent=Physo143007;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_126 . CDS 157383 157415 . + 0 ID=Physo143007;Parent=Physo143007;rank=7 scaffold_126 . exon 157383 157415 . + . ID=Physo143007.7;Parent=Physo143007;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_126 . CDS 157494 157615 . + 0 ID=Physo143007;Parent=Physo143007;rank=8 scaffold_126 . exon 157494 157615 . + . ID=Physo143007.8;Parent=Physo143007;constitutive=1;ensembl_phase=1;rank=8 scaffold_126 . CDS 157699 157829 . + 0 ID=Physo143007;Parent=Physo143007;rank=9 scaffold_126 . exon 157699 157829 . + . ID=Physo143007.9;Parent=Physo143007;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_126 . CDS 157905 158143 . + 0 ID=Physo143007;Parent=Physo143007;rank=10 scaffold_126 . exon 157905 158143 . + . ID=Physo143007.10;Parent=Physo143007;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_126 . CDS 158223 158665 . + 0 ID=Physo143007;Parent=Physo143007;rank=11 scaffold_126 . exon 158223 158759 . + . ID=Physo143007.11;Parent=Physo143007;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=11 scaffold_126 . repeat_region 162572 162604 . ? . description=dust scaffold_126 . repeat_region 167425 169473 . + . description=GypsyPi-1c_I-int scaffold_126 ensembl protein_coding_gene 160652 161147 . + . ID=Physo143008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260054;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 160652 161147 . + . ID=Physo143008;Parent=Physo143008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 160652 160822 . + 0 ID=Physo143008;Parent=Physo143008;rank=1 scaffold_126 . exon 160652 160822 . + . ID=Physo143008.1;Parent=Physo143008;constitutive=1;rank=1 scaffold_126 . CDS 160877 161098 . + 0 ID=Physo143008;Parent=Physo143008;rank=2 scaffold_126 . exon 160877 161098 . + . ID=Physo143008.2;Parent=Physo143008;constitutive=1;rank=2 scaffold_126 . CDS 161139 161147 . + 0 ID=Physo143008;Parent=Physo143008;rank=3 scaffold_126 . exon 161139 161147 . + . ID=Physo143008.3;Parent=Physo143008;constitutive=1;rank=3 scaffold_126 ensembl protein_coding_gene 167021 169874 . + . ID=Physo143009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260055;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 167021 169874 . + . ID=Physo143009;Parent=Physo143009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 167021 167404 . + 0 ID=Physo143009;Parent=Physo143009;rank=1 scaffold_126 . exon 167021 167404 . + . ID=Physo143009.1;Parent=Physo143009;constitutive=1;rank=1 scaffold_126 . CDS 167436 167567 . + 0 ID=Physo143009;Parent=Physo143009;rank=2 scaffold_126 . exon 167436 167567 . + . ID=Physo143009.2;Parent=Physo143009;constitutive=1;rank=2 scaffold_126 . CDS 167618 169345 . + 0 ID=Physo143009;Parent=Physo143009;rank=3 scaffold_126 . exon 167618 169345 . + . ID=Physo143009.3;Parent=Physo143009;constitutive=1;rank=3 scaffold_126 . CDS 169452 169874 . + 0 ID=Physo143009;Parent=Physo143009;rank=4 scaffold_126 . repeat_region 169735 169840 . ? . description=trf scaffold_126 . biological_region 172177 172179 0.999 - . logic_name=eponine scaffold_126 . biological_region 172205 172207 0.999 - . logic_name=eponine scaffold_126 . biological_region 172374 172374 0.999 - . logic_name=eponine scaffold_126 . biological_region 172388 172393 0.999 + . logic_name=eponine scaffold_126 . biological_region 172425 172432 0.999 + . logic_name=eponine scaffold_126 . biological_region 172453 172458 0.999 - . logic_name=eponine scaffold_126 . biological_region 172525 172525 0.999 - . logic_name=eponine scaffold_126 ensembl tRNA_gene 178620 178692 . + . ID=EPrPSOG00000000110;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_126 ensembl transcript 178620 178692 . + . ID=EPrPSOT00000000110;Parent=EPrPSOG00000000110;biotype=tRNA;logic_name=ncrna_eg scaffold_126 . exon 178620 178692 . + . ID=EPrPSOE00000000110;Parent=EPrPSOT00000000110;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_126 . exon 169452 169874 . + . ID=Physo143009.4;Parent=Physo143009;constitutive=1;rank=4 scaffold_126 ensembl protein_coding_gene 170150 172532 . - . ID=Physo143010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1260056;logic_name=jgi_physo1_1 scaffold_126 ensembl transcript 170150 172532 . - . ID=Physo143010;Parent=Physo143010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_126 . CDS 170150 170644 . - 0 ID=Physo143010;Parent=Physo143010;rank=5 scaffold_126 . exon 170150 170644 . - . ID=Physo143010.5;Parent=Physo143010;constitutive=1;rank=5 scaffold_126 . CDS 170959 171633 . - 0 ID=Physo143010;Parent=Physo143010;rank=4 scaffold_126 . exon 170959 171633 . - . ID=Physo143010.4;Parent=Physo143010;constitutive=1;rank=4 scaffold_126 . CDS 171684 171815 . - 0 ID=Physo143010;Parent=Physo143010;rank=3 scaffold_126 . exon 171684 171815 . - . ID=Physo143010.3;Parent=Physo143010;constitutive=1;rank=3 scaffold_126 . CDS 171847 172211 . - 0 ID=Physo143010;Parent=Physo143010;rank=2 scaffold_126 . exon 171847 172211 . - . ID=Physo143010.2;Parent=Physo143010;constitutive=1;ensembl_phase=1;rank=2 scaffold_126 . CDS 172274 172532 . - 0 ID=Physo143010;Parent=Physo143010;rank=1 scaffold_126 . exon 172274 172532 . - . ID=Physo143010.1;Parent=Physo143010;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_117 1 179537 scaffold_117 . repeat_region 904 919 . ? . description=dust scaffold_117 . repeat_region 2359 2385 . ? . description=dust scaffold_117 . repeat_region 7312 7364 . ? . description=dust scaffold_117 . biological_region 7796 7799 0.999 + . logic_name=eponine scaffold_117 . biological_region 7933 7937 0.999 + . logic_name=eponine scaffold_117 . biological_region 9847 9848 0.999 + . logic_name=eponine scaffold_117 . biological_region 9865 9871 0.999 + . logic_name=eponine scaffold_117 . biological_region 9886 9892 0.999 - . logic_name=eponine scaffold_117 . biological_region 9900 9902 0.999 + . logic_name=eponine scaffold_117 . biological_region 9904 9909 0.999 - . logic_name=eponine scaffold_117 . biological_region 9956 9962 0.999 - . logic_name=eponine scaffold_117 ensembl protein_coding_gene 2578 5661 . + . ID=Physo142542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170001;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 2578 5661 . + . ID=Physo142542;Parent=Physo142542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 2578 2943 . + 0 ID=Physo142542;Parent=Physo142542;rank=1 scaffold_117 . exon 2578 2943 . + . ID=Physo142542.1;Parent=Physo142542;constitutive=1;rank=1 scaffold_117 . CDS 3038 3225 . + 0 ID=Physo142542;Parent=Physo142542;rank=2 scaffold_117 . exon 3038 3225 . + . ID=Physo142542.2;Parent=Physo142542;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_117 . CDS 3292 3385 . + 0 ID=Physo142542;Parent=Physo142542;rank=3 scaffold_117 . exon 3292 3385 . + . ID=Physo142542.3;Parent=Physo142542;constitutive=1;ensembl_phase=2;rank=3 scaffold_117 . CDS 3450 3539 . + 0 ID=Physo142542;Parent=Physo142542;rank=4 scaffold_117 . exon 3450 3539 . + . ID=Physo142542.4;Parent=Physo142542;constitutive=1;rank=4 scaffold_117 . CDS 3798 4052 . + 0 ID=Physo142542;Parent=Physo142542;rank=5 scaffold_117 . exon 3798 4052 . + . ID=Physo142542.5;Parent=Physo142542;constitutive=1;rank=5 scaffold_117 . CDS 4120 4560 . + 0 ID=Physo142542;Parent=Physo142542;rank=6 scaffold_117 . exon 4120 4560 . + . ID=Physo142542.6;Parent=Physo142542;constitutive=1;rank=6 scaffold_117 . CDS 4691 4697 . + 0 ID=Physo142542;Parent=Physo142542;rank=7 scaffold_117 . exon 4691 4697 . + . ID=Physo142542.7;Parent=Physo142542;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_117 . CDS 4835 5661 . + 0 ID=Physo142542;Parent=Physo142542;rank=8 scaffold_117 . exon 4835 5661 . + . ID=Physo142542.8;Parent=Physo142542;constitutive=1;ensembl_phase=1;rank=8 scaffold_117 ensembl protein_coding_gene 5748 9532 . - . ID=Physo142543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170002;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 5748 9532 . - . ID=Physo142543;Parent=Physo142543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 5748 8098 . - 0 ID=Physo142543;Parent=Physo142543;rank=4 scaffold_117 . exon 5748 8098 . - . ID=Physo142543.4;Parent=Physo142543;constitutive=1;ensembl_phase=1;rank=4 scaffold_117 . CDS 8204 8783 . - 0 ID=Physo142543;Parent=Physo142543;rank=3 scaffold_117 . exon 8204 8783 . - . ID=Physo142543.3;Parent=Physo142543;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_117 . CDS 8869 9120 . - 0 ID=Physo142543;Parent=Physo142543;rank=2 scaffold_117 . exon 8869 9120 . - . ID=Physo142543.2;Parent=Physo142543;constitutive=1;rank=2 scaffold_117 . CDS 9185 9532 . - 0 ID=Physo142543;Parent=Physo142543;rank=1 scaffold_117 . exon 9185 9532 . - . ID=Physo142543.1;Parent=Physo142543;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 9719 14045 . + . ID=Physo158561;biotype=protein_coding;external_name=C_scaffold_117000002;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 9719 14045 . + . ID=Physo158561;Parent=Physo158561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 9719 11513 . + 0 ID=Physo158561;Parent=Physo158561;rank=1 scaffold_117 . exon 9719 11513 . + . ID=Physo158561.1;Parent=Physo158561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 . CDS 11535 11881 . + 0 ID=Physo158561;Parent=Physo158561;rank=2 scaffold_117 . CDS 11996 12063 . + 0 ID=Physo158561;Parent=Physo158561;rank=3 scaffold_117 . CDS 12322 12988 . + 0 ID=Physo158561;Parent=Physo158561;rank=4 scaffold_117 . CDS 13078 13137 . + 0 ID=Physo158561;Parent=Physo158561;rank=5 scaffold_117 . CDS 13226 13379 . + 0 ID=Physo158561;Parent=Physo158561;rank=6 scaffold_117 . CDS 13451 13549 . + 0 ID=Physo158561;Parent=Physo158561;rank=7 scaffold_117 . CDS 13627 13728 . + 0 ID=Physo158561;Parent=Physo158561;rank=8 scaffold_117 . CDS 13795 14045 . + 0 ID=Physo158561;Parent=Physo158561;rank=9 scaffold_117 ensembl protein_coding_gene 19306 20183 . + . ID=Physo122917;biotype=protein_coding;external_name=estExt_Genewise1.C_1170006;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 19306 20183 . + . ID=Physo122917;Parent=Physo122917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 19306 19449 . + . ID=Physo122917.1;Parent=Physo122917;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_117 . CDS 19355 19449 . + 0 ID=Physo122917;Parent=Physo122917;rank=1 scaffold_117 . CDS 19537 19759 . + 0 ID=Physo122917;Parent=Physo122917;rank=2 scaffold_117 . exon 19537 19759 . + . ID=Physo122917.2;Parent=Physo122917;constitutive=1;ensembl_phase=2;rank=2 scaffold_117 . CDS 19835 19909 . + 0 ID=Physo122917;Parent=Physo122917;rank=3 scaffold_117 . exon 19835 19909 . + . ID=Physo122917.3;Parent=Physo122917;constitutive=1;rank=3 scaffold_117 . CDS 19987 20181 . + 0 ID=Physo122917;Parent=Physo122917;rank=4 scaffold_117 ensembl protein_coding_gene 14854 17829 . - . ID=Physo142546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170005;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 14854 17829 . - . ID=Physo142546;Parent=Physo142546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 14854 17829 . - 0 ID=Physo142546;Parent=Physo142546;rank=1 scaffold_117 . exon 14854 17829 . - . ID=Physo142546.1;Parent=Physo142546;constitutive=1;rank=1 scaffold_117 . exon 11535 11881 . + . ID=Physo158561.2;Parent=Physo158561;constitutive=1;ensembl_phase=1;rank=2 scaffold_117 . exon 11996 12063 . + . ID=Physo158561.3;Parent=Physo158561;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_117 . exon 12322 12988 . + . ID=Physo158561.4;Parent=Physo158561;constitutive=1;ensembl_phase=2;rank=4 scaffold_117 . exon 13078 13137 . + . ID=Physo158561.5;Parent=Physo158561;constitutive=1;rank=5 scaffold_117 . exon 13226 13379 . + . ID=Physo158561.6;Parent=Physo158561;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_117 . exon 13451 13549 . + . ID=Physo158561.7;Parent=Physo158561;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_117 . exon 13627 13728 . + . ID=Physo158561.8;Parent=Physo158561;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_117 . exon 13795 14045 . + . ID=Physo158561.9;Parent=Physo158561;constitutive=1;ensembl_phase=1;rank=9 scaffold_117 . repeat_region 20281 20368 . ? . description=trf scaffold_117 . biological_region 23500 23502 0.999 + . logic_name=eponine scaffold_117 . biological_region 23560 23565 0.999 - . logic_name=eponine scaffold_117 . biological_region 23616 23624 0.999 + . logic_name=eponine scaffold_117 . biological_region 25084 25087 0.999 - . logic_name=eponine scaffold_117 . biological_region 25573 25578 0.999 - . logic_name=eponine scaffold_117 . biological_region 25787 25791 0.999 - . logic_name=eponine scaffold_117 . biological_region 25821 25827 0.999 + . logic_name=eponine scaffold_117 . biological_region 25883 25884 0.999 - . logic_name=eponine scaffold_117 . biological_region 28447 28447 0.999 + . logic_name=eponine scaffold_117 ensembl protein_coding_gene 23337 24018 . - . ID=Physo109480;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1170001;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 23337 24018 . - . ID=Physo109480;Parent=Physo109480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 23337 24018 . - . ID=Physo109480.1;Parent=Physo109480;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_117 . CDS 23528 23971 . - 0 ID=Physo109480;Parent=Physo109480;rank=1 scaffold_117 . exon 19987 20183 . + . ID=Physo122917.4;Parent=Physo122917;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_117 ensembl protein_coding_gene 20518 22870 . - . ID=Physo142548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170007;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 20518 22870 . - . ID=Physo142548;Parent=Physo142548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 20518 21257 . - 0 ID=Physo142548;Parent=Physo142548;rank=3 scaffold_117 . exon 20518 21257 . - . ID=Physo142548.3;Parent=Physo142548;constitutive=1;ensembl_phase=1;rank=3 scaffold_117 . CDS 21346 21417 . - 0 ID=Physo142548;Parent=Physo142548;rank=2 scaffold_117 . exon 21346 21417 . - . ID=Physo142548.2;Parent=Physo142548;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_117 . CDS 21865 22870 . - 0 ID=Physo142548;Parent=Physo142548;rank=1 scaffold_117 . exon 21865 22870 . - . ID=Physo142548.1;Parent=Physo142548;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 ensembl protein_coding_gene 25492 26534 . + . ID=Physo142550;biotype=protein_coding;description=Syntaxin 7-like protein [Source:UniProtKB/TrEMBL%3BAcc:Q6EEU7];external_name=estExt_fgenesh1_pg.C_1170009;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 25492 26534 . + . ID=Physo142550;Parent=Physo142550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 25492 26014 . + 0 ID=Physo142550;Parent=Physo142550;rank=1 scaffold_117 . exon 25492 26014 . + . ID=Physo142550.1;Parent=Physo142550;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 . CDS 26090 26382 . + 0 ID=Physo142550;Parent=Physo142550;rank=2 scaffold_117 . exon 26090 26534 . + . ID=Physo142550.2;Parent=Physo142550;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_117 ensembl protein_coding_gene 34480 35758 . - . ID=Physo158567;biotype=protein_coding;external_name=C_scaffold_117000008;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 34480 35758 . - . ID=Physo158567;Parent=Physo158567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 34480 34535 . - 0 ID=Physo158567;Parent=Physo158567;rank=6 scaffold_117 . exon 34480 34535 . - . ID=Physo158567.6;Parent=Physo158567;constitutive=1;ensembl_phase=1;rank=6 scaffold_117 . CDS 34643 34813 . - 0 ID=Physo158567;Parent=Physo158567;rank=5 scaffold_117 . exon 34643 34813 . - . ID=Physo158567.5;Parent=Physo158567;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_117 . CDS 35000 35081 . - 0 ID=Physo158567;Parent=Physo158567;rank=4 scaffold_117 . exon 35000 35081 . - . ID=Physo158567.4;Parent=Physo158567;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_117 . CDS 35106 35558 . - 0 ID=Physo158567;Parent=Physo158567;rank=3 scaffold_117 . exon 35106 35558 . - . ID=Physo158567.3;Parent=Physo158567;constitutive=1;rank=3 scaffold_117 . CDS 35598 35670 . - 0 ID=Physo158567;Parent=Physo158567;rank=2 scaffold_117 . exon 35598 35670 . - . ID=Physo158567.2;Parent=Physo158567;constitutive=1;ensembl_phase=2;rank=2 scaffold_117 . CDS 35706 35758 . - 0 ID=Physo158567;Parent=Physo158567;rank=1 scaffold_117 . exon 35706 35758 . - . ID=Physo158567.1;Parent=Physo158567;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_117 ensembl protein_coding_gene 35965 38292 . + . ID=Physo158568;biotype=protein_coding;external_name=C_scaffold_117000009;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 35965 38292 . + . ID=Physo158568;Parent=Physo158568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 35965 36156 . + 0 ID=Physo158568;Parent=Physo158568;rank=1 scaffold_117 . exon 35965 36156 . + . ID=Physo158568.1;Parent=Physo158568;constitutive=1;rank=1 scaffold_117 . CDS 36262 36599 . + 0 ID=Physo158568;Parent=Physo158568;rank=2 scaffold_117 . exon 36262 36599 . + . ID=Physo158568.2;Parent=Physo158568;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_117 . CDS 36636 37257 . + 0 ID=Physo158568;Parent=Physo158568;rank=3 scaffold_117 . exon 36636 37257 . + . ID=Physo158568.3;Parent=Physo158568;constitutive=1;ensembl_phase=2;rank=3 scaffold_117 . CDS 37702 38292 . + 0 ID=Physo158568;Parent=Physo158568;rank=4 scaffold_117 . exon 37702 38292 . + . ID=Physo158568.4;Parent=Physo158568;constitutive=1;rank=4 scaffold_117 . repeat_region 40080 40106 . ? . description=trf scaffold_117 . biological_region 41499 41501 0.999 + . logic_name=eponine scaffold_117 . biological_region 45274 45275 0.999 - . logic_name=eponine scaffold_117 . biological_region 45421 45426 0.999 + . logic_name=eponine scaffold_117 . biological_region 45904 45905 0.999 + . logic_name=eponine scaffold_117 . repeat_region 46252 46315 . ? . description=trf scaffold_117 . biological_region 46282 46285 0.999 + . logic_name=eponine scaffold_117 . biological_region 46309 46315 0.999 + . logic_name=eponine scaffold_117 . biological_region 46928 46931 0.999 + . logic_name=eponine scaffold_117 . biological_region 46950 46956 0.999 + . logic_name=eponine scaffold_117 . biological_region 47023 47025 0.999 - . logic_name=eponine scaffold_117 . biological_region 47424 47431 0.999 + . logic_name=eponine scaffold_117 . biological_region 47743 47747 0.999 - . logic_name=eponine scaffold_117 . biological_region 49152 49155 0.999 - . logic_name=eponine scaffold_117 ensembl protein_coding_gene 41138 42060 . + . ID=Physo142552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170011;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 41138 42060 . + . ID=Physo142552;Parent=Physo142552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 41138 42060 . + . ID=Physo142552.1;Parent=Physo142552;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_117 . CDS 41210 41806 . + 0 ID=Physo142552;Parent=Physo142552;rank=1 scaffold_117 ensembl protein_coding_gene 44937 45560 . - . ID=Physo142553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170012;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 44937 45560 . - . ID=Physo142553;Parent=Physo142553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 44937 45560 . - 0 ID=Physo142553;Parent=Physo142553;rank=1 scaffold_117 . exon 44937 45560 . - . ID=Physo142553.1;Parent=Physo142553;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 48372 49128 . - . ID=Physo142554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170013;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 48372 49128 . - . ID=Physo142554;Parent=Physo142554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 48372 49128 . - . ID=Physo142554.1;Parent=Physo142554;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_117 . CDS 48442 49128 . - 0 ID=Physo142554;Parent=Physo142554;rank=1 scaffold_117 ensembl protein_coding_gene 49358 50938 . + . ID=Physo142555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170014;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 49358 50938 . + . ID=Physo142555;Parent=Physo142555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 49358 50938 . + 0 ID=Physo142555;Parent=Physo142555;rank=1 scaffold_117 . exon 49358 50938 . + . ID=Physo142555.1;Parent=Physo142555;constitutive=1;rank=1 scaffold_117 . repeat_region 51016 51037 . ? . description=dust scaffold_117 . repeat_region 58691 58698 . ? . description=dust scaffold_117 . repeat_region 58841 58849 . ? . description=dust scaffold_117 ensembl protein_coding_gene 50969 51611 . - . ID=Physo142556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170015;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 50969 51611 . - . ID=Physo142556;Parent=Physo142556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 50969 51611 . - . ID=Physo142556.1;Parent=Physo142556;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_117 . CDS 51085 51609 . - 0 ID=Physo142556;Parent=Physo142556;rank=1 scaffold_117 ensembl protein_coding_gene 52257 52952 . - . ID=Physo142557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170016;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 52257 52952 . - . ID=Physo142557;Parent=Physo142557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 52257 52414 . - 0 ID=Physo142557;Parent=Physo142557;rank=2 scaffold_117 . exon 52257 52414 . - . ID=Physo142557.2;Parent=Physo142557;constitutive=1;ensembl_phase=1;rank=2 scaffold_117 . CDS 52508 52952 . - 0 ID=Physo142557;Parent=Physo142557;rank=1 scaffold_117 . exon 52508 52952 . - . ID=Physo142557.1;Parent=Physo142557;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 ensembl protein_coding_gene 53352 55405 . - . ID=Physo142558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170017;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 53352 55405 . - . ID=Physo142558;Parent=Physo142558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 53352 55397 . - 0 ID=Physo142558;Parent=Physo142558;rank=1 scaffold_117 . exon 53352 55405 . - . ID=Physo142558.1;Parent=Physo142558;constitutive=1;ensembl_phase=-1;rank=1 scaffold_117 ensembl protein_coding_gene 56033 57234 . - . ID=Physo142559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170018;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 56033 57234 . - . ID=Physo142559;Parent=Physo142559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 56033 56221 . - 0 ID=Physo142559;Parent=Physo142559;rank=6 scaffold_117 . exon 56033 56221 . - . ID=Physo142559.6;Parent=Physo142559;constitutive=1;rank=6 scaffold_117 . CDS 56296 56335 . - 0 ID=Physo142559;Parent=Physo142559;rank=5 scaffold_117 . exon 56296 56335 . - . ID=Physo142559.5;Parent=Physo142559;constitutive=1;ensembl_phase=2;rank=5 scaffold_117 . CDS 56399 56500 . - 0 ID=Physo142559;Parent=Physo142559;rank=4 scaffold_117 . exon 56399 56500 . - . ID=Physo142559.4;Parent=Physo142559;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_117 . CDS 56565 56763 . - 0 ID=Physo142559;Parent=Physo142559;rank=3 scaffold_117 . exon 56565 56763 . - . ID=Physo142559.3;Parent=Physo142559;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_117 . CDS 57058 57154 . - 0 ID=Physo142559;Parent=Physo142559;rank=2 scaffold_117 . exon 57058 57154 . - . ID=Physo142559.2;Parent=Physo142559;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_117 . CDS 57214 57234 . - 0 ID=Physo142559;Parent=Physo142559;rank=1 scaffold_117 . exon 57214 57234 . - . ID=Physo142559.1;Parent=Physo142559;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 58193 58525 . - . ID=Physo142560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170019;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 58193 58525 . - . ID=Physo142560;Parent=Physo142560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 58193 58525 . - 0 ID=Physo142560;Parent=Physo142560;rank=1 scaffold_117 . exon 58193 58525 . - . ID=Physo142560.1;Parent=Physo142560;constitutive=1;rank=1 scaffold_117 . repeat_region 60135 60154 . ? . description=trf scaffold_117 . repeat_region 62786 62817 . ? . description=trf scaffold_117 . repeat_region 68706 68888 . + . description=GypsyPi-1c_LTR scaffold_117 . repeat_region 68889 68942 . + . description=GypsyPi-1c_I-int scaffold_117 . repeat_region 69246 69281 . ? . description=trf scaffold_117 . repeat_region 69325 69913 . + . description=GypsyPi-1c_I-int scaffold_117 . biological_region 69438 69442 0.999 - . logic_name=eponine scaffold_117 . repeat_region 76307 76352 . ? . description=dust scaffold_117 ensembl protein_coding_gene 76217 78295 . - . ID=Physo109481;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1170002;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 76217 78295 . - . ID=Physo109481;Parent=Physo109481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 76217 78295 . - . ID=Physo109481.1;Parent=Physo109481;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_117 . CDS 76301 78283 . - 0 ID=Physo109481;Parent=Physo109481;rank=1 scaffold_117 ensembl protein_coding_gene 72444 75251 . - . ID=Physo142561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170020;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 72444 75251 . - . ID=Physo142561;Parent=Physo142561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 72444 75251 . - 0 ID=Physo142561;Parent=Physo142561;rank=1 scaffold_117 . exon 72444 75251 . - . ID=Physo142561.1;Parent=Physo142561;constitutive=1;rank=1 scaffold_117 . biological_region 83406 83408 0.999 + . logic_name=eponine scaffold_117 . biological_region 84157 84159 0.999 - . logic_name=eponine scaffold_117 . biological_region 85759 85763 0.999 - . logic_name=eponine scaffold_117 . biological_region 86937 86937 0.999 - . logic_name=eponine scaffold_117 . biological_region 87628 87634 0.999 + . logic_name=eponine scaffold_117 . biological_region 88331 88334 0.999 - . logic_name=eponine scaffold_117 ensembl protein_coding_gene 80244 81182 . + . ID=Physo142563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170022;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 80244 81182 . + . ID=Physo142563;Parent=Physo142563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 80244 81182 . + 0 ID=Physo142563;Parent=Physo142563;rank=1 scaffold_117 . exon 80244 81182 . + . ID=Physo142563.1;Parent=Physo142563;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 81430 82203 . + . ID=Physo142564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170023;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 81430 82203 . + . ID=Physo142564;Parent=Physo142564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 81430 82203 . + 0 ID=Physo142564;Parent=Physo142564;rank=1 scaffold_117 . exon 81430 82203 . + . ID=Physo142564.1;Parent=Physo142564;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 82814 84913 . + . ID=Physo142565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170024;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 82814 84913 . + . ID=Physo142565;Parent=Physo142565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 82814 84913 . + 0 ID=Physo142565;Parent=Physo142565;rank=1 scaffold_117 . exon 82814 84913 . + . ID=Physo142565.1;Parent=Physo142565;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 85014 87125 . - . ID=Physo142566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170025;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 85014 87125 . - . ID=Physo142566;Parent=Physo142566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 85014 85274 . - 0 ID=Physo142566;Parent=Physo142566;rank=5 scaffold_117 . exon 85014 85274 . - . ID=Physo142566.5;Parent=Physo142566;constitutive=1;rank=5 scaffold_117 . CDS 85322 85970 . - 0 ID=Physo142566;Parent=Physo142566;rank=4 scaffold_117 . exon 85322 85970 . - . ID=Physo142566.4;Parent=Physo142566;constitutive=1;ensembl_phase=2;rank=4 scaffold_117 . CDS 86060 86139 . - 0 ID=Physo142566;Parent=Physo142566;rank=3 scaffold_117 . exon 86060 86139 . - . ID=Physo142566.3;Parent=Physo142566;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_117 . CDS 86225 86302 . - 0 ID=Physo142566;Parent=Physo142566;rank=2 scaffold_117 . exon 86225 86302 . - . ID=Physo142566.2;Parent=Physo142566;constitutive=1;rank=2 scaffold_117 . CDS 86376 87125 . - 0 ID=Physo142566;Parent=Physo142566;rank=1 scaffold_117 . exon 86376 87125 . - . ID=Physo142566.1;Parent=Physo142566;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 89183 97086 . - . ID=Physo142568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170027;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 89183 97086 . - . ID=Physo142568;Parent=Physo142568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 89183 89270 . - 0 ID=Physo142568;Parent=Physo142568;rank=10 scaffold_117 . exon 89183 89270 . - . ID=Physo142568.10;Parent=Physo142568;constitutive=1;ensembl_phase=2;rank=10 scaffold_117 . CDS 89430 89527 . - 0 ID=Physo142568;Parent=Physo142568;rank=9 scaffold_117 . exon 89430 89527 . - . ID=Physo142568.9;Parent=Physo142568;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_117 . CDS 89605 90581 . - 0 ID=Physo142568;Parent=Physo142568;rank=8 scaffold_117 . exon 89605 90581 . - . ID=Physo142568.8;Parent=Physo142568;constitutive=1;ensembl_phase=1;rank=8 scaffold_117 . CDS 90769 90838 . - 0 ID=Physo142568;Parent=Physo142568;rank=7 scaffold_117 . CDS 90986 91306 . - 0 ID=Physo142568;Parent=Physo142568;rank=6 scaffold_117 . CDS 91384 91460 . - 0 ID=Physo142568;Parent=Physo142568;rank=5 scaffold_117 . CDS 91806 92166 . - 0 ID=Physo142568;Parent=Physo142568;rank=4 scaffold_117 . CDS 92251 92378 . - 0 ID=Physo142568;Parent=Physo142568;rank=3 scaffold_117 . CDS 92883 93157 . - 0 ID=Physo142568;Parent=Physo142568;rank=2 scaffold_117 . CDS 93437 97086 . - 0 ID=Physo142568;Parent=Physo142568;rank=1 scaffold_117 ensembl protein_coding_gene 88184 88973 . + . ID=Physo158570;biotype=protein_coding;external_name=C_scaffold_117000011;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 88184 88973 . + . ID=Physo158570;Parent=Physo158570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 88184 88374 . + 0 ID=Physo158570;Parent=Physo158570;rank=1 scaffold_117 . exon 88184 88374 . + . ID=Physo158570.1;Parent=Physo158570;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_117 . CDS 88455 88533 . + 0 ID=Physo158570;Parent=Physo158570;rank=2 scaffold_117 . exon 88455 88533 . + . ID=Physo158570.2;Parent=Physo158570;constitutive=1;ensembl_phase=2;rank=2 scaffold_117 . CDS 88611 88973 . + 0 ID=Physo158570;Parent=Physo158570;rank=3 scaffold_117 . exon 88611 88973 . + . ID=Physo158570.3;Parent=Physo158570;constitutive=1;rank=3 scaffold_117 . repeat_region 94488 95438 . ? . description=trf scaffold_117 . repeat_region 94503 95438 . ? . description=trf scaffold_117 . exon 90769 90838 . - . ID=Physo142568.7;Parent=Physo142568;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_117 . exon 90986 91306 . - . ID=Physo142568.6;Parent=Physo142568;constitutive=1;rank=6 scaffold_117 . exon 91384 91460 . - . ID=Physo142568.5;Parent=Physo142568;constitutive=1;ensembl_phase=1;rank=5 scaffold_117 . exon 91806 92166 . - . ID=Physo142568.4;Parent=Physo142568;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_117 . exon 92251 92378 . - . ID=Physo142568.3;Parent=Physo142568;constitutive=1;ensembl_phase=1;rank=3 scaffold_117 . exon 92883 93157 . - . ID=Physo142568.2;Parent=Physo142568;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_117 . exon 93437 97086 . - . ID=Physo142568.1;Parent=Physo142568;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_117 . biological_region 100277 100283 0.999 + . logic_name=eponine scaffold_117 . repeat_region 104862 104869 . ? . description=dust scaffold_117 . repeat_region 106146 106154 . ? . description=dust scaffold_117 . biological_region 106424 106431 0.999 - . logic_name=eponine scaffold_117 . biological_region 106974 106976 0.999 - . logic_name=eponine scaffold_117 . biological_region 107029 107031 0.999 + . logic_name=eponine scaffold_117 . repeat_region 107515 107570 . ? . description=dust scaffold_117 . biological_region 108195 108198 0.999 - . logic_name=eponine scaffold_117 ensembl protein_coding_gene 104929 106058 . - . ID=Physo109482;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1170003;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 104929 106058 . - . ID=Physo109482;Parent=Physo109482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 104929 105122 . - . ID=Physo109482.6;Parent=Physo109482;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_117 . CDS 105034 105122 . - 0 ID=Physo109482;Parent=Physo109482;rank=6 scaffold_117 . CDS 105194 105322 . - 0 ID=Physo109482;Parent=Physo109482;rank=5 scaffold_117 . exon 105194 105322 . - . ID=Physo109482.5;Parent=Physo109482;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_117 . CDS 105406 105458 . - 0 ID=Physo109482;Parent=Physo109482;rank=4 scaffold_117 . exon 105406 105458 . - . ID=Physo109482.4;Parent=Physo109482;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_117 . CDS 105544 105658 . - 0 ID=Physo109482;Parent=Physo109482;rank=3 scaffold_117 . exon 105544 105658 . - . ID=Physo109482.3;Parent=Physo109482;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_117 . CDS 105744 105826 . - 0 ID=Physo109482;Parent=Physo109482;rank=2 scaffold_117 . exon 105744 105826 . - . ID=Physo109482.2;Parent=Physo109482;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_117 . CDS 105911 105954 . - 0 ID=Physo109482;Parent=Physo109482;rank=1 scaffold_117 . exon 105911 106058 . - . ID=Physo109482.1;Parent=Physo109482;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_117 ensembl protein_coding_gene 100650 102559 . + . ID=Physo142569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170028;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 100650 102559 . + . ID=Physo142569;Parent=Physo142569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 100650 100700 . + 0 ID=Physo142569;Parent=Physo142569;rank=1 scaffold_117 . exon 100650 100700 . + . ID=Physo142569.1;Parent=Physo142569;constitutive=1;rank=1 scaffold_117 . CDS 100871 101553 . + 0 ID=Physo142569;Parent=Physo142569;rank=2 scaffold_117 . exon 100871 101553 . + . ID=Physo142569.2;Parent=Physo142569;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_117 . CDS 102040 102559 . + 0 ID=Physo142569;Parent=Physo142569;rank=3 scaffold_117 . exon 102040 102559 . + . ID=Physo142569.3;Parent=Physo142569;constitutive=1;ensembl_phase=2;rank=3 scaffold_117 ensembl protein_coding_gene 106457 107126 . - . ID=Physo142571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170030;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 106457 107126 . - . ID=Physo142571;Parent=Physo142571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 106457 107126 . - . ID=Physo142571.1;Parent=Physo142571;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_117 . CDS 106464 107126 . - 0 ID=Physo142571;Parent=Physo142571;rank=1 scaffold_117 ensembl protein_coding_gene 107469 108938 . + . ID=Physo142572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170031;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 107469 108938 . + . ID=Physo142572;Parent=Physo142572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 107469 107712 . + . ID=Physo142572.1;Parent=Physo142572;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_117 . exon 107846 108938 . + . ID=Physo142572.2;Parent=Physo142572;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_117 . CDS 108020 108874 . + 0 ID=Physo142572;Parent=Physo142572;rank=1 scaffold_117 . repeat_region 113462 113508 . ? . description=trf scaffold_117 . repeat_region 119489 119533 . ? . description=trf scaffold_117 ensembl protein_coding_gene 110794 113173 . - . ID=Physo109483;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1170004;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 110794 113173 . - . ID=Physo109483;Parent=Physo109483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 110794 111110 . - 0 ID=Physo109483;Parent=Physo109483;rank=7 scaffold_117 . exon 110794 111110 . - . ID=Physo109483.7;Parent=Physo109483;constitutive=1;ensembl_phase=1;rank=7 scaffold_117 . CDS 111181 111529 . - 0 ID=Physo109483;Parent=Physo109483;rank=6 scaffold_117 . exon 111181 111529 . - . ID=Physo109483.6;Parent=Physo109483;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_117 . CDS 111602 112393 . - 0 ID=Physo109483;Parent=Physo109483;rank=5 scaffold_117 . exon 111602 112393 . - . ID=Physo109483.5;Parent=Physo109483;constitutive=1;rank=5 scaffold_117 . CDS 112474 112519 . - 0 ID=Physo109483;Parent=Physo109483;rank=4 scaffold_117 . exon 112474 112519 . - . ID=Physo109483.4;Parent=Physo109483;constitutive=1;ensembl_phase=2;rank=4 scaffold_117 . CDS 112591 112734 . - 0 ID=Physo109483;Parent=Physo109483;rank=3 scaffold_117 . exon 112591 112734 . - . ID=Physo109483.3;Parent=Physo109483;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_117 . CDS 112805 112959 . - 0 ID=Physo109483;Parent=Physo109483;rank=2 scaffold_117 . exon 112805 112959 . - . ID=Physo109483.2;Parent=Physo109483;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_117 . CDS 113060 113173 . - 0 ID=Physo109483;Parent=Physo109483;rank=1 scaffold_117 . exon 113060 113173 . - . ID=Physo109483.1;Parent=Physo109483;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 110110 110579 . + . ID=Physo142573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170032;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 110110 110579 . + . ID=Physo142573;Parent=Physo142573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 110110 110209 . + 0 ID=Physo142573;Parent=Physo142573;rank=1 scaffold_117 . exon 110110 110209 . + . ID=Physo142573.1;Parent=Physo142573;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 . CDS 110275 110579 . + 0 ID=Physo142573;Parent=Physo142573;rank=2 scaffold_117 . exon 110275 110579 . + . ID=Physo142573.2;Parent=Physo142573;constitutive=1;ensembl_phase=1;rank=2 scaffold_117 ensembl protein_coding_gene 114362 114783 . + . ID=Physo142575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170034;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 114362 114783 . + . ID=Physo142575;Parent=Physo142575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 114362 114783 . + . ID=Physo142575.1;Parent=Physo142575;constitutive=1;ensembl_phase=-1;rank=1 scaffold_117 . CDS 114418 114783 . + 0 ID=Physo142575;Parent=Physo142575;rank=1 scaffold_117 ensembl protein_coding_gene 115542 115994 . + . ID=Physo142576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170035;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 115542 115994 . + . ID=Physo142576;Parent=Physo142576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 115542 115994 . + 0 ID=Physo142576;Parent=Physo142576;rank=1 scaffold_117 . exon 115542 115994 . + . ID=Physo142576.1;Parent=Physo142576;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 116506 120568 . - . ID=Physo142577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170036;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 116506 120568 . - . ID=Physo142577;Parent=Physo142577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 116506 120568 . - . ID=Physo142577.1;Parent=Physo142577;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_117 . CDS 116546 120568 . - 0 ID=Physo142577;Parent=Physo142577;rank=1 scaffold_117 . biological_region 120364 120368 0.999 + . logic_name=eponine scaffold_117 . biological_region 120417 120424 0.999 + . logic_name=eponine scaffold_117 . biological_region 120428 120431 0.999 - . logic_name=eponine scaffold_117 . biological_region 120664 120665 0.999 + . logic_name=eponine scaffold_117 . biological_region 120703 120707 0.999 - . logic_name=eponine scaffold_117 . biological_region 121102 121105 0.999 + . logic_name=eponine scaffold_117 . biological_region 121551 121557 0.999 + . logic_name=eponine scaffold_117 . biological_region 121624 121628 0.999 - . logic_name=eponine scaffold_117 . biological_region 121646 121652 0.999 - . logic_name=eponine scaffold_117 ensembl protein_coding_gene 125261 126540 . + . ID=Physo109484;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1170005;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 125261 126540 . + . ID=Physo109484;Parent=Physo109484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 125261 125377 . + 0 ID=Physo109484;Parent=Physo109484;rank=1 scaffold_117 . exon 125261 125377 . + . ID=Physo109484.1;Parent=Physo109484;constitutive=1;rank=1 scaffold_117 . CDS 125457 125708 . + 0 ID=Physo109484;Parent=Physo109484;rank=2 scaffold_117 . exon 125457 125708 . + . ID=Physo109484.2;Parent=Physo109484;constitutive=1;rank=2 scaffold_117 . CDS 125788 126046 . + 0 ID=Physo109484;Parent=Physo109484;rank=3 scaffold_117 . exon 125788 126046 . + . ID=Physo109484.3;Parent=Physo109484;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_117 . CDS 126128 126540 . + 0 ID=Physo109484;Parent=Physo109484;rank=4 scaffold_117 . exon 126128 126540 . + . ID=Physo109484.4;Parent=Physo109484;constitutive=1;ensembl_phase=1;rank=4 scaffold_117 ensembl protein_coding_gene 124166 124990 . + . ID=Physo142578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170037;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 124166 124990 . + . ID=Physo142578;Parent=Physo142578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 124166 124990 . + 0 ID=Physo142578;Parent=Physo142578;rank=1 scaffold_117 . exon 124166 124990 . + . ID=Physo142578.1;Parent=Physo142578;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 127082 129659 . - . ID=Physo142580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170039;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 127082 129659 . - . ID=Physo142580;Parent=Physo142580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 127082 127873 . - 0 ID=Physo142580;Parent=Physo142580;rank=2 scaffold_117 . exon 127082 127873 . - . ID=Physo142580.2;Parent=Physo142580;constitutive=1;rank=2 scaffold_117 . CDS 128163 129659 . - 0 ID=Physo142580;Parent=Physo142580;rank=1 scaffold_117 . exon 128163 129659 . - . ID=Physo142580.1;Parent=Physo142580;constitutive=1;rank=1 scaffold_117 . repeat_region 130624 130655 . ? . description=trf scaffold_117 . repeat_region 130812 130832 . ? . description=trf scaffold_117 . repeat_region 137592 137599 . ? . description=dust scaffold_117 ensembl protein_coding_gene 131875 134628 . + . ID=Physo109485;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1170006;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 131875 134628 . + . ID=Physo109485;Parent=Physo109485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 131875 134535 . + 0 ID=Physo109485;Parent=Physo109485;rank=1 scaffold_117 . exon 131875 134628 . + . ID=Physo109485.1;Parent=Physo109485;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_117 ensembl protein_coding_gene 129921 131249 . + . ID=Physo142581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170040;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 129921 131249 . + . ID=Physo142581;Parent=Physo142581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 129921 131249 . + 0 ID=Physo142581;Parent=Physo142581;rank=1 scaffold_117 . exon 129921 131249 . + . ID=Physo142581.1;Parent=Physo142581;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 134736 136275 . - . ID=Physo142583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170042;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 134736 136275 . - . ID=Physo142583;Parent=Physo142583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 134736 134960 . - 0 ID=Physo142583;Parent=Physo142583;rank=9 scaffold_117 . exon 134736 134960 . - . ID=Physo142583.9;Parent=Physo142583;constitutive=1;rank=9 scaffold_117 . CDS 135030 135108 . - 0 ID=Physo142583;Parent=Physo142583;rank=8 scaffold_117 . exon 135030 135108 . - . ID=Physo142583.8;Parent=Physo142583;constitutive=1;ensembl_phase=2;rank=8 scaffold_117 . CDS 135182 135256 . - 0 ID=Physo142583;Parent=Physo142583;rank=7 scaffold_117 . exon 135182 135256 . - . ID=Physo142583.7;Parent=Physo142583;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_117 . CDS 135320 135399 . - 0 ID=Physo142583;Parent=Physo142583;rank=6 scaffold_117 . exon 135320 135399 . - . ID=Physo142583.6;Parent=Physo142583;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_117 . CDS 135467 135544 . - 0 ID=Physo142583;Parent=Physo142583;rank=5 scaffold_117 . exon 135467 135544 . - . ID=Physo142583.5;Parent=Physo142583;constitutive=1;rank=5 scaffold_117 . CDS 135621 135711 . - 0 ID=Physo142583;Parent=Physo142583;rank=4 scaffold_117 . exon 135621 135711 . - . ID=Physo142583.4;Parent=Physo142583;constitutive=1;ensembl_phase=2;rank=4 scaffold_117 . CDS 135789 135890 . - 0 ID=Physo142583;Parent=Physo142583;rank=3 scaffold_117 . exon 135789 135890 . - . ID=Physo142583.3;Parent=Physo142583;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_117 . CDS 135970 136054 . - 0 ID=Physo142583;Parent=Physo142583;rank=2 scaffold_117 . exon 135970 136054 . - . ID=Physo142583.2;Parent=Physo142583;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_117 . CDS 136139 136241 . - 0 ID=Physo142583;Parent=Physo142583;rank=1 scaffold_117 . exon 136139 136275 . - . ID=Physo142583.1;Parent=Physo142583;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_117 ensembl protein_coding_gene 137773 138237 . + . ID=Physo142584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170043;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 137773 138237 . + . ID=Physo142584;Parent=Physo142584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 137773 138237 . + 0 ID=Physo142584;Parent=Physo142584;rank=1 scaffold_117 . exon 137773 138237 . + . ID=Physo142584.1;Parent=Physo142584;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 138672 141900 . + . ID=Physo142585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170044;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 138672 141900 . + . ID=Physo142585;Parent=Physo142585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 138672 138898 . + 0 ID=Physo142585;Parent=Physo142585;rank=1 scaffold_117 . exon 138672 138898 . + . ID=Physo142585.1;Parent=Physo142585;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_117 . CDS 139040 139193 . + 0 ID=Physo142585;Parent=Physo142585;rank=2 scaffold_117 . exon 139040 139193 . + . ID=Physo142585.2;Parent=Physo142585;constitutive=1;ensembl_phase=2;rank=2 scaffold_117 . CDS 139317 139816 . + 0 ID=Physo142585;Parent=Physo142585;rank=3 scaffold_117 . exon 139317 139816 . + . ID=Physo142585.3;Parent=Physo142585;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_117 . CDS 140139 140290 . + 0 ID=Physo142585;Parent=Physo142585;rank=4 scaffold_117 . CDS 140373 141185 . + 0 ID=Physo142585;Parent=Physo142585;rank=5 scaffold_117 . CDS 141212 141900 . + 0 ID=Physo142585;Parent=Physo142585;rank=6 scaffold_117 . biological_region 140901 140906 0.999 - . logic_name=eponine scaffold_117 . biological_region 140957 140959 0.999 + . logic_name=eponine scaffold_117 . biological_region 141002 141009 0.999 - . logic_name=eponine scaffold_117 . biological_region 141030 141032 0.999 - . logic_name=eponine scaffold_117 . biological_region 143574 143577 0.999 + . logic_name=eponine scaffold_117 . biological_region 143609 143610 0.999 + . logic_name=eponine scaffold_117 . biological_region 143672 143675 0.999 - . logic_name=eponine scaffold_117 . biological_region 143689 143690 0.999 - . logic_name=eponine scaffold_117 . biological_region 144173 144174 0.999 + . logic_name=eponine scaffold_117 . biological_region 144222 144230 0.999 - . logic_name=eponine scaffold_117 . biological_region 144279 144283 0.999 + . logic_name=eponine scaffold_117 . biological_region 144293 144296 0.999 - . logic_name=eponine scaffold_117 . biological_region 144324 144325 0.999 - . logic_name=eponine scaffold_117 . biological_region 144395 144396 0.999 + . logic_name=eponine scaffold_117 . biological_region 144550 144554 0.999 - . logic_name=eponine scaffold_117 . biological_region 144735 144743 0.999 - . logic_name=eponine scaffold_117 . biological_region 144754 144756 0.999 - . logic_name=eponine scaffold_117 . biological_region 144775 144777 0.999 - . logic_name=eponine scaffold_117 . biological_region 146486 146491 0.999 - . logic_name=eponine scaffold_117 . exon 140139 140290 . + . ID=Physo142585.4;Parent=Physo142585;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_117 . exon 140373 141185 . + . ID=Physo142585.5;Parent=Physo142585;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_117 . exon 141212 141900 . + . ID=Physo142585.6;Parent=Physo142585;constitutive=1;ensembl_phase=1;rank=6 scaffold_117 ensembl protein_coding_gene 145543 146459 . - . ID=Physo142587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170046;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 145543 146459 . - . ID=Physo142587;Parent=Physo142587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 145543 145971 . - 0 ID=Physo142587;Parent=Physo142587;rank=2 scaffold_117 . exon 145543 145971 . - . ID=Physo142587.2;Parent=Physo142587;constitutive=1;rank=2 scaffold_117 . CDS 145995 146459 . - 0 ID=Physo142587;Parent=Physo142587;rank=1 scaffold_117 . exon 145995 146459 . - . ID=Physo142587.1;Parent=Physo142587;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 148482 150277 . + . ID=Physo142588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170047;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 148482 150277 . + . ID=Physo142588;Parent=Physo142588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 148482 148625 . + 0 ID=Physo142588;Parent=Physo142588;rank=1 scaffold_117 . exon 148482 148625 . + . ID=Physo142588.1;Parent=Physo142588;constitutive=1;rank=1 scaffold_117 . CDS 148709 148771 . + 0 ID=Physo142588;Parent=Physo142588;rank=2 scaffold_117 . exon 148709 148771 . + . ID=Physo142588.2;Parent=Physo142588;constitutive=1;rank=2 scaffold_117 . CDS 148841 150277 . + 0 ID=Physo142588;Parent=Physo142588;rank=3 scaffold_117 . exon 148841 150277 . + . ID=Physo142588.3;Parent=Physo142588;constitutive=1;rank=3 scaffold_117 ensembl protein_coding_gene 142548 143813 . - . ID=Physo158574;biotype=protein_coding;external_name=C_scaffold_117000015;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 142548 143813 . - . ID=Physo158574;Parent=Physo158574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 142548 143488 . - 0 ID=Physo158574;Parent=Physo158574;rank=3 scaffold_117 . exon 142548 143488 . - . ID=Physo158574.3;Parent=Physo158574;constitutive=1;ensembl_phase=1;rank=3 scaffold_117 . CDS 143508 143583 . - 0 ID=Physo158574;Parent=Physo158574;rank=2 scaffold_117 . exon 143508 143583 . - . ID=Physo158574.2;Parent=Physo158574;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_117 . CDS 143622 143813 . - 0 ID=Physo158574;Parent=Physo158574;rank=1 scaffold_117 . exon 143622 143813 . - . ID=Physo158574.1;Parent=Physo158574;constitutive=1;rank=1 scaffold_117 . repeat_region 150122 150273 . + . description=(CGA)n scaffold_117 . repeat_region 150145 150179 . ? . description=trf scaffold_117 . repeat_region 151891 151900 . ? . description=dust scaffold_117 . repeat_region 154140 154147 . ? . description=dust scaffold_117 . repeat_region 156814 156829 . ? . description=dust scaffold_117 . repeat_region 156948 156961 . ? . description=dust scaffold_117 . repeat_region 158951 158959 . ? . description=dust scaffold_117 ensembl protein_coding_gene 150475 151733 . - . ID=Physo142589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170048;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 150475 151733 . - . ID=Physo142589;Parent=Physo142589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 150475 150795 . - 0 ID=Physo142589;Parent=Physo142589;rank=3 scaffold_117 . exon 150475 150795 . - . ID=Physo142589.3;Parent=Physo142589;constitutive=1;rank=3 scaffold_117 . CDS 150874 151381 . - 0 ID=Physo142589;Parent=Physo142589;rank=2 scaffold_117 . exon 150874 151381 . - . ID=Physo142589.2;Parent=Physo142589;constitutive=1;ensembl_phase=2;rank=2 scaffold_117 . CDS 151480 151733 . - 0 ID=Physo142589;Parent=Physo142589;rank=1 scaffold_117 . exon 151480 151733 . - . ID=Physo142589.1;Parent=Physo142589;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_117 ensembl pseudogene 152165 152908 . - . ID=Physo142590;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_1170049;logic_name=jgi_physo1_1 scaffold_117 ensembl pseudogene 152165 152908 . - . ID=Physo142590;Parent=Physo142590;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_117 . exon 152165 152908 . - . ID=Physo142590.1;Parent=Physo142590;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_117 ensembl protein_coding_gene 154939 156645 . + . ID=Physo142591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170050;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 154939 156645 . + . ID=Physo142591;Parent=Physo142591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 154939 154972 . + 0 ID=Physo142591;Parent=Physo142591;rank=1 scaffold_117 . exon 154939 154972 . + . ID=Physo142591.1;Parent=Physo142591;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 . CDS 155067 155136 . + 0 ID=Physo142591;Parent=Physo142591;rank=2 scaffold_117 . exon 155067 155136 . + . ID=Physo142591.2;Parent=Physo142591;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_117 . CDS 155210 155328 . + 0 ID=Physo142591;Parent=Physo142591;rank=3 scaffold_117 . exon 155210 155328 . + . ID=Physo142591.3;Parent=Physo142591;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_117 . CDS 155411 155529 . + 0 ID=Physo142591;Parent=Physo142591;rank=4 scaffold_117 . exon 155411 155529 . + . ID=Physo142591.4;Parent=Physo142591;constitutive=1;ensembl_phase=1;rank=4 scaffold_117 . CDS 155621 155702 . + 0 ID=Physo142591;Parent=Physo142591;rank=5 scaffold_117 . exon 155621 155702 . + . ID=Physo142591.5;Parent=Physo142591;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_117 . CDS 155778 155887 . + 0 ID=Physo142591;Parent=Physo142591;rank=6 scaffold_117 . exon 155778 155887 . + . ID=Physo142591.6;Parent=Physo142591;constitutive=1;ensembl_phase=1;rank=6 scaffold_117 . CDS 155970 156040 . + 0 ID=Physo142591;Parent=Physo142591;rank=7 scaffold_117 . exon 155970 156040 . + . ID=Physo142591.7;Parent=Physo142591;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_117 . CDS 156115 156227 . + 0 ID=Physo142591;Parent=Physo142591;rank=8 scaffold_117 . exon 156115 156227 . + . ID=Physo142591.8;Parent=Physo142591;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_117 . CDS 156302 156391 . + 0 ID=Physo142591;Parent=Physo142591;rank=9 scaffold_117 . exon 156302 156391 . + . ID=Physo142591.9;Parent=Physo142591;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_117 . CDS 156485 156645 . + 0 ID=Physo142591;Parent=Physo142591;rank=10 scaffold_117 . exon 156485 156645 . + . ID=Physo142591.10;Parent=Physo142591;constitutive=1;ensembl_phase=1;rank=10 scaffold_117 . biological_region 159960 159964 0.999 + . logic_name=eponine scaffold_117 . biological_region 160374 160381 0.999 - . logic_name=eponine scaffold_117 . biological_region 160425 160429 0.999 - . logic_name=eponine scaffold_117 . biological_region 164906 164907 0.999 + . logic_name=eponine scaffold_117 . biological_region 164983 164984 0.999 - . logic_name=eponine scaffold_117 ensembl protein_coding_gene 160118 161000 . + . ID=Physo142592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170051;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 160118 161000 . + . ID=Physo142592;Parent=Physo142592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 160118 160235 . + 0 ID=Physo142592;Parent=Physo142592;rank=1 scaffold_117 . exon 160118 160235 . + . ID=Physo142592.1;Parent=Physo142592;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_117 . CDS 160282 160477 . + 0 ID=Physo142592;Parent=Physo142592;rank=2 scaffold_117 . exon 160282 160477 . + . ID=Physo142592.2;Parent=Physo142592;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_117 . CDS 160550 160665 . + 0 ID=Physo142592;Parent=Physo142592;rank=3 scaffold_117 . exon 160550 160665 . + . ID=Physo142592.3;Parent=Physo142592;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_117 . CDS 160748 160818 . + 0 ID=Physo142592;Parent=Physo142592;rank=4 scaffold_117 . exon 160748 161000 . + . ID=Physo142592.4;Parent=Physo142592;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_117 ensembl protein_coding_gene 161734 162704 . + . ID=Physo142593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170052;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 161734 162704 . + . ID=Physo142593;Parent=Physo142593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 161734 162704 . + . ID=Physo142593.1;Parent=Physo142593;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_117 . CDS 161760 162569 . + 0 ID=Physo142593;Parent=Physo142593;rank=1 scaffold_117 ensembl protein_coding_gene 165053 166386 . + . ID=Physo158575;biotype=protein_coding;external_name=C_scaffold_117000016;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 165053 166386 . + . ID=Physo158575;Parent=Physo158575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 165053 165312 . + 0 ID=Physo158575;Parent=Physo158575;rank=1 scaffold_117 . exon 165053 165312 . + . ID=Physo158575.1;Parent=Physo158575;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_117 . CDS 165414 165474 . + 0 ID=Physo158575;Parent=Physo158575;rank=2 scaffold_117 . exon 165414 165474 . + . ID=Physo158575.2;Parent=Physo158575;constitutive=1;ensembl_phase=2;rank=2 scaffold_117 . CDS 165508 166386 . + 0 ID=Physo158575;Parent=Physo158575;rank=3 scaffold_117 . exon 165508 166386 . + . ID=Physo158575.3;Parent=Physo158575;constitutive=1;rank=3 scaffold_117 ensembl protein_coding_gene 166716 169712 . - . ID=Physo158576;biotype=protein_coding;external_name=C_scaffold_117000017;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 166716 169712 . - . ID=Physo158576;Parent=Physo158576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 166716 166718 . - 0 ID=Physo158576;Parent=Physo158576;rank=13 scaffold_117 . exon 166716 166718 . - . ID=Physo158576.13;Parent=Physo158576;constitutive=1;rank=13 scaffold_117 . CDS 166777 167481 . - 0 ID=Physo158576;Parent=Physo158576;rank=12 scaffold_117 . exon 166777 167481 . - . ID=Physo158576.12;Parent=Physo158576;constitutive=1;rank=12 scaffold_117 . CDS 167642 167684 . - 0 ID=Physo158576;Parent=Physo158576;rank=11 scaffold_117 . exon 167642 167684 . - . ID=Physo158576.11;Parent=Physo158576;constitutive=1;ensembl_phase=2;rank=11 scaffold_117 . CDS 167816 168192 . - 0 ID=Physo158576;Parent=Physo158576;rank=10 scaffold_117 . exon 167816 168192 . - . ID=Physo158576.10;Parent=Physo158576;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_117 . CDS 168266 168346 . - 0 ID=Physo158576;Parent=Physo158576;rank=9 scaffold_117 . exon 168266 168346 . - . ID=Physo158576.9;Parent=Physo158576;constitutive=1;rank=9 scaffold_117 . CDS 168415 168577 . - 0 ID=Physo158576;Parent=Physo158576;rank=8 scaffold_117 . exon 168415 168577 . - . ID=Physo158576.8;Parent=Physo158576;constitutive=1;ensembl_phase=2;rank=8 scaffold_117 . CDS 168646 168690 . - 0 ID=Physo158576;Parent=Physo158576;rank=7 scaffold_117 . exon 168646 168690 . - . ID=Physo158576.7;Parent=Physo158576;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_117 . CDS 168757 168834 . - 0 ID=Physo158576;Parent=Physo158576;rank=6 scaffold_117 . exon 168757 168834 . - . ID=Physo158576.6;Parent=Physo158576;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_117 . CDS 168914 169026 . - 0 ID=Physo158576;Parent=Physo158576;rank=5 scaffold_117 . exon 168914 169026 . - . ID=Physo158576.5;Parent=Physo158576;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_117 . CDS 169109 169183 . - 0 ID=Physo158576;Parent=Physo158576;rank=4 scaffold_117 . exon 169109 169183 . - . ID=Physo158576.4;Parent=Physo158576;constitutive=1;rank=4 scaffold_117 . CDS 169259 169337 . - 0 ID=Physo158576;Parent=Physo158576;rank=3 scaffold_117 . exon 169259 169337 . - . ID=Physo158576.3;Parent=Physo158576;constitutive=1;ensembl_phase=2;rank=3 scaffold_117 . CDS 169409 169506 . - 0 ID=Physo158576;Parent=Physo158576;rank=2 scaffold_117 . exon 169409 169506 . - . ID=Physo158576.2;Parent=Physo158576;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_117 . CDS 169632 169712 . - 0 ID=Physo158576;Parent=Physo158576;rank=1 scaffold_117 ensembl protein_coding_gene 176227 178234 . - . ID=Physo109486;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1170007;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 176227 178234 . - . ID=Physo109486;Parent=Physo109486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 176227 178234 . - . ID=Physo109486.1;Parent=Physo109486;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_117 . CDS 176384 178234 . - 0 ID=Physo109486;Parent=Physo109486;rank=1 scaffold_117 ensembl protein_coding_gene 173150 174232 . + . ID=Physo122975;biotype=protein_coding;external_name=estExt_Genewise1.C_1170064;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 173150 174232 . + . ID=Physo122975;Parent=Physo122975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . exon 173150 173629 . + . ID=Physo122975.1;Parent=Physo122975;constitutive=1;ensembl_phase=-1;rank=1 scaffold_117 . CDS 173210 173629 . + 0 ID=Physo122975;Parent=Physo122975;rank=1 scaffold_117 . CDS 173756 174232 . + 0 ID=Physo122975;Parent=Physo122975;rank=2 scaffold_117 . exon 173756 174232 . + . ID=Physo122975.2;Parent=Physo122975;constitutive=1;rank=2 scaffold_117 ensembl protein_coding_gene 174601 175971 . + . ID=Physo142598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1170057;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 174601 175971 . + . ID=Physo142598;Parent=Physo142598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 174601 175971 . + 0 ID=Physo142598;Parent=Physo142598;rank=1 scaffold_117 . exon 174601 175971 . + . ID=Physo142598.1;Parent=Physo142598;constitutive=1;rank=1 scaffold_117 . exon 169632 169712 . - . ID=Physo158576.1;Parent=Physo158576;constitutive=1;rank=1 scaffold_117 ensembl protein_coding_gene 170154 170998 . + . ID=Physo158578;biotype=protein_coding;external_name=C_scaffold_117000019;logic_name=jgi_physo1_1 scaffold_117 ensembl transcript 170154 170998 . + . ID=Physo158578;Parent=Physo158578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_117 . CDS 170154 170429 . + 0 ID=Physo158578;Parent=Physo158578;rank=1 scaffold_117 . exon 170154 170429 . + . ID=Physo158578.1;Parent=Physo158578;constitutive=1;rank=1 scaffold_117 . CDS 170500 170841 . + 0 ID=Physo158578;Parent=Physo158578;rank=2 scaffold_117 . exon 170500 170841 . + . ID=Physo158578.2;Parent=Physo158578;constitutive=1;rank=2 scaffold_117 . CDS 170963 170998 . + 0 ID=Physo158578;Parent=Physo158578;rank=3 scaffold_117 . exon 170963 170998 . + . ID=Physo158578.3;Parent=Physo158578;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_115 1 184382 scaffold_115 . biological_region 1742 1745 0.999 - . logic_name=eponine scaffold_115 . repeat_region 1939 1981 . ? . description=trf scaffold_115 . biological_region 7287 7289 0.999 + . logic_name=eponine scaffold_115 . biological_region 8117 8118 0.999 + . logic_name=eponine scaffold_115 . biological_region 8215 8217 0.999 - . logic_name=eponine scaffold_115 ensembl protein_coding_gene 721 1309 . + . ID=Physo122833;biotype=protein_coding;external_name=estExt_Genewise1.C_1150012;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 721 1309 . + . ID=Physo122833;Parent=Physo122833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . exon 721 889 . + . ID=Physo122833.1;Parent=Physo122833;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_115 . CDS 751 889 . + 0 ID=Physo122833;Parent=Physo122833;rank=1 scaffold_115 . CDS 915 1054 . + 0 ID=Physo122833;Parent=Physo122833;rank=2 scaffold_115 . exon 915 1309 . + . ID=Physo122833.2;Parent=Physo122833;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_115 ensembl protein_coding_gene 4186 4869 . - . ID=Physo142449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150001;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 4186 4869 . - . ID=Physo142449;Parent=Physo142449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 4186 4869 . - 0 ID=Physo142449;Parent=Physo142449;rank=1 scaffold_115 . exon 4186 4869 . - . ID=Physo142449.1;Parent=Physo142449;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 6168 10263 . + . ID=Physo158535;biotype=protein_coding;external_name=C_scaffold_115000001;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 6168 10263 . + . ID=Physo158535;Parent=Physo158535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . exon 6168 7846 . + . ID=Physo158535.1;Parent=Physo158535;constitutive=1;ensembl_phase=-1;rank=1 scaffold_115 . CDS 6170 7846 . + 0 ID=Physo158535;Parent=Physo158535;rank=1 scaffold_115 . CDS 7998 8381 . + 0 ID=Physo158535;Parent=Physo158535;rank=2 scaffold_115 . exon 7998 8381 . + . ID=Physo158535.2;Parent=Physo158535;constitutive=1;rank=2 scaffold_115 . CDS 8462 8522 . + 0 ID=Physo158535;Parent=Physo158535;rank=3 scaffold_115 . exon 8462 8522 . + . ID=Physo158535.3;Parent=Physo158535;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_115 . CDS 8610 9031 . + 0 ID=Physo158535;Parent=Physo158535;rank=4 scaffold_115 . exon 8610 9031 . + . ID=Physo158535.4;Parent=Physo158535;constitutive=1;ensembl_phase=1;rank=4 scaffold_115 . CDS 9433 9987 . + 0 ID=Physo158535;Parent=Physo158535;rank=5 scaffold_115 . exon 9433 9987 . + . ID=Physo158535.5;Parent=Physo158535;constitutive=1;rank=5 scaffold_115 . CDS 10009 10263 . + 0 ID=Physo158535;Parent=Physo158535;rank=6 scaffold_115 . exon 10009 10263 . + . ID=Physo158535.6;Parent=Physo158535;constitutive=1;rank=6 scaffold_115 ensembl protein_coding_gene 11469 21039 . - . ID=Physo158536;biotype=protein_coding;external_name=C_scaffold_115000002;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 11469 21039 . - . ID=Physo158536;Parent=Physo158536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 11469 11534 . - 0 ID=Physo158536;Parent=Physo158536;rank=20 scaffold_115 . exon 11469 11534 . - . ID=Physo158536.20;Parent=Physo158536;constitutive=1;rank=20 scaffold_115 . CDS 11575 11781 . - 0 ID=Physo158536;Parent=Physo158536;rank=19 scaffold_115 . exon 11575 11781 . - . ID=Physo158536.19;Parent=Physo158536;constitutive=1;rank=19 scaffold_115 . CDS 11887 12086 . - 0 ID=Physo158536;Parent=Physo158536;rank=18 scaffold_115 . exon 11887 12086 . - . ID=Physo158536.18;Parent=Physo158536;constitutive=1;ensembl_phase=1;rank=18 scaffold_115 . CDS 12426 12494 . - 0 ID=Physo158536;Parent=Physo158536;rank=17 scaffold_115 . exon 12426 12494 . - . ID=Physo158536.17;Parent=Physo158536;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=17 scaffold_115 . CDS 12576 12696 . - 0 ID=Physo158536;Parent=Physo158536;rank=16 scaffold_115 . exon 12576 12696 . - . ID=Physo158536.16;Parent=Physo158536;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_115 . CDS 12768 12938 . - 0 ID=Physo158536;Parent=Physo158536;rank=15 scaffold_115 . exon 12768 12938 . - . ID=Physo158536.15;Parent=Physo158536;constitutive=1;rank=15 scaffold_115 . CDS 13123 13425 . - 0 ID=Physo158536;Parent=Physo158536;rank=14 scaffold_115 . exon 13123 13425 . - . ID=Physo158536.14;Parent=Physo158536;constitutive=1;rank=14 scaffold_115 . CDS 13502 13543 . - 0 ID=Physo158536;Parent=Physo158536;rank=13 scaffold_115 . exon 13502 13543 . - . ID=Physo158536.13;Parent=Physo158536;constitutive=1;rank=13 scaffold_115 . CDS 13644 14974 . - 0 ID=Physo158536;Parent=Physo158536;rank=12 scaffold_115 . exon 13644 14974 . - . ID=Physo158536.12;Parent=Physo158536;constitutive=1;ensembl_phase=1;rank=12 scaffold_115 . CDS 15182 15430 . - 0 ID=Physo158536;Parent=Physo158536;rank=11 scaffold_115 . exon 15182 15430 . - . ID=Physo158536.11;Parent=Physo158536;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_115 . CDS 15581 15689 . - 0 ID=Physo158536;Parent=Physo158536;rank=10 scaffold_115 . exon 15581 15689 . - . ID=Physo158536.10;Parent=Physo158536;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_115 . CDS 15936 16570 . - 0 ID=Physo158536;Parent=Physo158536;rank=9 scaffold_115 . exon 15936 16570 . - . ID=Physo158536.9;Parent=Physo158536;constitutive=1;ensembl_phase=1;rank=9 scaffold_115 . CDS 16937 17038 . - 0 ID=Physo158536;Parent=Physo158536;rank=8 scaffold_115 . exon 16937 17038 . - . ID=Physo158536.8;Parent=Physo158536;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_115 . CDS 17282 17782 . - 0 ID=Physo158536;Parent=Physo158536;rank=7 scaffold_115 . exon 17282 17782 . - . ID=Physo158536.7;Parent=Physo158536;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_115 . CDS 17810 18426 . - 0 ID=Physo158536;Parent=Physo158536;rank=6 scaffold_115 . exon 17810 18426 . - . ID=Physo158536.6;Parent=Physo158536;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_115 . CDS 18971 19083 . - 0 ID=Physo158536;Parent=Physo158536;rank=5 scaffold_115 . exon 18971 19083 . - . ID=Physo158536.5;Parent=Physo158536;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_115 . CDS 19120 20181 . - 0 ID=Physo158536;Parent=Physo158536;rank=4 scaffold_115 . exon 19120 20181 . - . ID=Physo158536.4;Parent=Physo158536;constitutive=1;rank=4 scaffold_115 . CDS 20413 20650 . - 0 ID=Physo158536;Parent=Physo158536;rank=3 scaffold_115 . CDS 20738 20896 . - 0 ID=Physo158536;Parent=Physo158536;rank=2 scaffold_115 . CDS 20918 21039 . - 0 ID=Physo158536;Parent=Physo158536;rank=1 scaffold_115 . biological_region 22136 22137 0.999 + . logic_name=eponine scaffold_115 . biological_region 22492 22495 0.999 - . logic_name=eponine scaffold_115 . biological_region 22510 22511 0.999 - . logic_name=eponine scaffold_115 . repeat_region 22995 23022 . ? . description=trf scaffold_115 . biological_region 23309 23316 0.999 + . logic_name=eponine scaffold_115 . biological_region 23453 23454 0.999 - . logic_name=eponine scaffold_115 . biological_region 23690 23696 0.999 + . logic_name=eponine scaffold_115 . biological_region 23735 23736 0.999 + . logic_name=eponine scaffold_115 . biological_region 23751 23752 0.999 + . logic_name=eponine scaffold_115 . biological_region 26892 26895 0.999 - . logic_name=eponine scaffold_115 . biological_region 26897 26899 0.999 + . logic_name=eponine scaffold_115 . biological_region 26993 26999 0.999 - . logic_name=eponine scaffold_115 . biological_region 27076 27082 0.999 + . logic_name=eponine scaffold_115 . biological_region 27078 27083 0.999 - . logic_name=eponine scaffold_115 . biological_region 27113 27119 0.999 + . logic_name=eponine scaffold_115 . biological_region 27126 27129 0.999 - . logic_name=eponine scaffold_115 . biological_region 27161 27169 0.999 - . logic_name=eponine scaffold_115 . biological_region 27179 27190 0.999 + . logic_name=eponine scaffold_115 . biological_region 27212 27215 0.999 - . logic_name=eponine scaffold_115 . biological_region 27269 27270 0.999 + . logic_name=eponine scaffold_115 . biological_region 27321 27322 0.999 + . logic_name=eponine scaffold_115 . biological_region 27337 27342 0.999 - . logic_name=eponine scaffold_115 . biological_region 27353 27355 0.999 - . logic_name=eponine scaffold_115 . biological_region 28945 28945 0.999 + . logic_name=eponine scaffold_115 ensembl protein_coding_gene 21465 22583 . - . ID=Physo142453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150005;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 21465 22583 . - . ID=Physo142453;Parent=Physo142453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 21465 21787 . - 0 ID=Physo142453;Parent=Physo142453;rank=2 scaffold_115 . exon 21465 21787 . - . ID=Physo142453.2;Parent=Physo142453;constitutive=1;ensembl_phase=1;rank=2 scaffold_115 . CDS 22109 22583 . - 0 ID=Physo142453;Parent=Physo142453;rank=1 scaffold_115 . exon 22109 22583 . - . ID=Physo142453.1;Parent=Physo142453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 ensembl protein_coding_gene 23282 24964 . - . ID=Physo142454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150006;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 23282 24964 . - . ID=Physo142454;Parent=Physo142454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 23282 24964 . - 0 ID=Physo142454;Parent=Physo142454;rank=1 scaffold_115 . exon 23282 24964 . - . ID=Physo142454.1;Parent=Physo142454;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 25191 27486 . - . ID=Physo142455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150007;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 25191 27486 . - . ID=Physo142455;Parent=Physo142455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 25191 25402 . - 0 ID=Physo142455;Parent=Physo142455;rank=3 scaffold_115 . exon 25191 25402 . - . ID=Physo142455.3;Parent=Physo142455;constitutive=1;ensembl_phase=1;rank=3 scaffold_115 . CDS 25480 25866 . - 0 ID=Physo142455;Parent=Physo142455;rank=2 scaffold_115 . exon 25480 25866 . - . ID=Physo142455.2;Parent=Physo142455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_115 . CDS 25933 27466 . - 0 ID=Physo142455;Parent=Physo142455;rank=1 scaffold_115 . exon 25933 27486 . - . ID=Physo142455.1;Parent=Physo142455;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_115 . exon 20413 20650 . - . ID=Physo158536.3;Parent=Physo158536;constitutive=1;ensembl_phase=2;rank=3 scaffold_115 . exon 20738 20896 . - . ID=Physo158536.2;Parent=Physo158536;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_115 . exon 20918 21039 . - . ID=Physo158536.1;Parent=Physo158536;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 . repeat_region 36168 36180 . ? . description=dust scaffold_115 . repeat_region 37331 37341 . ? . description=dust scaffold_115 . repeat_region 38657 38665 . ? . description=dust scaffold_115 ensembl protein_coding_gene 36204 37106 . + . ID=Physo142456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150008;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 36204 37106 . + . ID=Physo142456;Parent=Physo142456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 36204 36368 . + 0 ID=Physo142456;Parent=Physo142456;rank=1 scaffold_115 . exon 36204 36368 . + . ID=Physo142456.1;Parent=Physo142456;constitutive=1;rank=1 scaffold_115 . CDS 36495 36649 . + 0 ID=Physo142456;Parent=Physo142456;rank=2 scaffold_115 . exon 36495 36649 . + . ID=Physo142456.2;Parent=Physo142456;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_115 . CDS 36716 36789 . + 0 ID=Physo142456;Parent=Physo142456;rank=3 scaffold_115 . exon 36716 36789 . + . ID=Physo142456.3;Parent=Physo142456;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_115 . CDS 36881 36945 . + 0 ID=Physo142456;Parent=Physo142456;rank=4 scaffold_115 . exon 36881 36945 . + . ID=Physo142456.4;Parent=Physo142456;constitutive=1;ensembl_phase=1;rank=4 scaffold_115 . CDS 37014 37106 . + 0 ID=Physo142456;Parent=Physo142456;rank=5 scaffold_115 . exon 37014 37106 . + . ID=Physo142456.5;Parent=Physo142456;constitutive=1;rank=5 scaffold_115 ensembl protein_coding_gene 37266 38581 . - . ID=Physo142457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150009;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 37266 38581 . - . ID=Physo142457;Parent=Physo142457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . exon 37266 38581 . - . ID=Physo142457.1;Parent=Physo142457;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_115 . CDS 37385 38581 . - 0 ID=Physo142457;Parent=Physo142457;rank=1 scaffold_115 . biological_region 39599 39605 0.999 + . logic_name=eponine scaffold_115 . repeat_region 40736 52682 . ? . description=dust scaffold_115 . repeat_region 52683 53149 . ? . description=dust scaffold_115 ensembl protein_coding_gene 54762 55226 . - . ID=Physo109476;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1150001;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 54762 55226 . - . ID=Physo109476;Parent=Physo109476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . exon 54762 55226 . - . ID=Physo109476.1;Parent=Physo109476;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_115 . CDS 54868 55182 . - 0 ID=Physo109476;Parent=Physo109476;rank=1 scaffold_115 ensembl protein_coding_gene 53150 54628 . - . ID=Physo142458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150010;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 53150 54628 . - . ID=Physo142458;Parent=Physo142458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . exon 53150 53281 . - . ID=Physo142458.7;Parent=Physo142458;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_115 . CDS 53151 53281 . - 0 ID=Physo142458;Parent=Physo142458;rank=7 scaffold_115 . CDS 53375 53460 . - 0 ID=Physo142458;Parent=Physo142458;rank=6 scaffold_115 . exon 53375 53460 . - . ID=Physo142458.6;Parent=Physo142458;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_115 . CDS 53553 53664 . - 0 ID=Physo142458;Parent=Physo142458;rank=5 scaffold_115 . exon 53553 53664 . - . ID=Physo142458.5;Parent=Physo142458;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_115 . CDS 53750 53970 . - 0 ID=Physo142458;Parent=Physo142458;rank=4 scaffold_115 . exon 53750 53970 . - . ID=Physo142458.4;Parent=Physo142458;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_115 . CDS 54059 54208 . - 0 ID=Physo142458;Parent=Physo142458;rank=3 scaffold_115 . exon 54059 54208 . - . ID=Physo142458.3;Parent=Physo142458;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_115 . CDS 54287 54414 . - 0 ID=Physo142458;Parent=Physo142458;rank=2 scaffold_115 . exon 54287 54414 . - . ID=Physo142458.2;Parent=Physo142458;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_115 . CDS 54482 54628 . - 0 ID=Physo142458;Parent=Physo142458;rank=1 scaffold_115 . exon 54482 54628 . - . ID=Physo142458.1;Parent=Physo142458;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 55580 56280 . - . ID=Physo142460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150012;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 55580 56280 . - . ID=Physo142460;Parent=Physo142460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 55580 56203 . - 0 ID=Physo142460;Parent=Physo142460;rank=1 scaffold_115 . exon 55580 56280 . - . ID=Physo142460.1;Parent=Physo142460;constitutive=1;ensembl_phase=-1;rank=1 scaffold_115 ensembl protein_coding_gene 56416 57355 . + . ID=Physo142461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150013;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 56416 57355 . + . ID=Physo142461;Parent=Physo142461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 56416 56442 . + 0 ID=Physo142461;Parent=Physo142461;rank=1 scaffold_115 . exon 56416 56442 . + . ID=Physo142461.1;Parent=Physo142461;constitutive=1;rank=1 scaffold_115 . CDS 56528 56663 . + 0 ID=Physo142461;Parent=Physo142461;rank=2 scaffold_115 . exon 56528 56663 . + . ID=Physo142461.2;Parent=Physo142461;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_115 . CDS 56749 56860 . + 0 ID=Physo142461;Parent=Physo142461;rank=3 scaffold_115 . exon 56749 56860 . + . ID=Physo142461.3;Parent=Physo142461;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_115 . CDS 56953 57038 . + 0 ID=Physo142461;Parent=Physo142461;rank=4 scaffold_115 . exon 56953 57038 . + . ID=Physo142461.4;Parent=Physo142461;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_115 . CDS 57132 57307 . + 0 ID=Physo142461;Parent=Physo142461;rank=5 scaffold_115 . exon 57132 57355 . + . ID=Physo142461.5;Parent=Physo142461;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_115 ensembl protein_coding_gene 57503 58789 . - . ID=Physo142462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150014;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 57503 58789 . - . ID=Physo142462;Parent=Physo142462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 57503 58789 . - 0 ID=Physo142462;Parent=Physo142462;rank=1 scaffold_115 . exon 57503 58789 . - . ID=Physo142462.1;Parent=Physo142462;constitutive=1;rank=1 scaffold_115 . biological_region 58794 58799 0.999 - . logic_name=eponine scaffold_115 . biological_region 60659 60662 0.999 - . logic_name=eponine scaffold_115 . biological_region 60659 60671 0.999 + . logic_name=eponine scaffold_115 . biological_region 60735 60739 0.999 - . logic_name=eponine scaffold_115 . biological_region 61052 61056 0.999 + . logic_name=eponine scaffold_115 . biological_region 61715 61723 0.999 - . logic_name=eponine scaffold_115 . biological_region 61864 61865 0.999 - . logic_name=eponine scaffold_115 . biological_region 62031 62035 0.999 - . logic_name=eponine scaffold_115 . biological_region 65936 65938 0.999 + . logic_name=eponine scaffold_115 . biological_region 65966 65968 0.999 - . logic_name=eponine scaffold_115 . biological_region 66773 66775 0.999 + . logic_name=eponine scaffold_115 . biological_region 66792 66795 0.999 + . logic_name=eponine scaffold_115 ensembl protein_coding_gene 61112 62500 . + . ID=Physo158537;biotype=protein_coding;external_name=C_scaffold_115000003;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 61112 62500 . + . ID=Physo158537;Parent=Physo158537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 61112 61381 . + 0 ID=Physo158537;Parent=Physo158537;rank=1 scaffold_115 . exon 61112 61381 . + . ID=Physo158537.1;Parent=Physo158537;constitutive=1;rank=1 scaffold_115 . CDS 61433 62500 . + 0 ID=Physo158537;Parent=Physo158537;rank=2 scaffold_115 . exon 61433 62500 . + . ID=Physo158537.2;Parent=Physo158537;constitutive=1;rank=2 scaffold_115 ensembl protein_coding_gene 63112 65433 . - . ID=Physo158538;biotype=protein_coding;external_name=C_scaffold_115000004;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 63112 65433 . - . ID=Physo158538;Parent=Physo158538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 63112 63714 . - 0 ID=Physo158538;Parent=Physo158538;rank=5 scaffold_115 . exon 63112 63714 . - . ID=Physo158538.5;Parent=Physo158538;constitutive=1;rank=5 scaffold_115 . CDS 63882 63898 . - 0 ID=Physo158538;Parent=Physo158538;rank=4 scaffold_115 . exon 63882 63898 . - . ID=Physo158538.4;Parent=Physo158538;constitutive=1;ensembl_phase=1;rank=4 scaffold_115 . CDS 64124 64198 . - 0 ID=Physo158538;Parent=Physo158538;rank=3 scaffold_115 . exon 64124 64198 . - . ID=Physo158538.3;Parent=Physo158538;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_115 . CDS 64632 65048 . - 0 ID=Physo158538;Parent=Physo158538;rank=2 scaffold_115 . exon 64632 65048 . - . ID=Physo158538.2;Parent=Physo158538;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_115 . CDS 65091 65433 . - 0 ID=Physo158538;Parent=Physo158538;rank=1 scaffold_115 . exon 65091 65433 . - . ID=Physo158538.1;Parent=Physo158538;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 ensembl protein_coding_gene 65742 67021 . + . ID=Physo158540;biotype=protein_coding;external_name=C_scaffold_115000006;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 65742 67021 . + . ID=Physo158540;Parent=Physo158540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 65742 66106 . + 0 ID=Physo158540;Parent=Physo158540;rank=1 scaffold_115 . exon 65742 66106 . + . ID=Physo158540.1;Parent=Physo158540;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 . CDS 66581 66692 . + 0 ID=Physo158540;Parent=Physo158540;rank=2 scaffold_115 . exon 66581 66692 . + . ID=Physo158540.2;Parent=Physo158540;constitutive=1;ensembl_phase=2;rank=2 scaffold_115 . CDS 66726 66863 . + 0 ID=Physo158540;Parent=Physo158540;rank=3 scaffold_115 . exon 66726 66863 . + . ID=Physo158540.3;Parent=Physo158540;constitutive=1;rank=3 scaffold_115 . CDS 66941 67021 . + 0 ID=Physo158540;Parent=Physo158540;rank=4 scaffold_115 . exon 66941 67021 . + . ID=Physo158540.4;Parent=Physo158540;constitutive=1;rank=4 scaffold_115 . repeat_region 71133 71160 . ? . description=trf scaffold_115 . repeat_region 71134 71167 . ? . description=trf scaffold_115 . repeat_region 75567 75609 . ? . description=trf scaffold_115 ensembl protein_coding_gene 76102 76854 . - . ID=Physo109477;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1150002;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 76102 76854 . - . ID=Physo109477;Parent=Physo109477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 76102 76854 . - 0 ID=Physo109477;Parent=Physo109477;rank=1 scaffold_115 . exon 76102 76854 . - . ID=Physo109477.1;Parent=Physo109477;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 70313 71026 . + . ID=Physo142466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150018;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 70313 71026 . + . ID=Physo142466;Parent=Physo142466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 70313 71026 . + 0 ID=Physo142466;Parent=Physo142466;rank=1 scaffold_115 . exon 70313 71026 . + . ID=Physo142466.1;Parent=Physo142466;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 71473 72591 . + . ID=Physo142467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150019;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 71473 72591 . + . ID=Physo142467;Parent=Physo142467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . exon 71473 72476 . + . ID=Physo142467.1;Parent=Physo142467;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_115 . CDS 71477 72476 . + 0 ID=Physo142467;Parent=Physo142467;rank=1 scaffold_115 . CDS 72545 72591 . + 0 ID=Physo142467;Parent=Physo142467;rank=2 scaffold_115 . exon 72545 72591 . + . ID=Physo142467.2;Parent=Physo142467;constitutive=1;ensembl_phase=1;rank=2 scaffold_115 ensembl protein_coding_gene 74016 76041 . + . ID=Physo142468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150020;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 74016 76041 . + . ID=Physo142468;Parent=Physo142468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 74016 76001 . + 0 ID=Physo142468;Parent=Physo142468;rank=1 scaffold_115 . exon 74016 76041 . + . ID=Physo142468.1;Parent=Physo142468;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_115 ensembl protein_coding_gene 77456 78167 . - . ID=Physo142470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150022;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 77456 78167 . - . ID=Physo142470;Parent=Physo142470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 77456 77773 . - 0 ID=Physo142470;Parent=Physo142470;rank=3 scaffold_115 . exon 77456 77773 . - . ID=Physo142470.3;Parent=Physo142470;constitutive=1;rank=3 scaffold_115 . CDS 77824 78085 . - 0 ID=Physo142470;Parent=Physo142470;rank=2 scaffold_115 . CDS 78112 78167 . - 0 ID=Physo142470;Parent=Physo142470;rank=1 scaffold_115 . biological_region 84092 84097 0.999 - . logic_name=eponine scaffold_115 . exon 77824 78085 . - . ID=Physo142470.2;Parent=Physo142470;constitutive=1;ensembl_phase=2;rank=2 scaffold_115 . exon 78112 78167 . - . ID=Physo142470.1;Parent=Physo142470;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 ensembl protein_coding_gene 81246 81860 . - . ID=Physo142471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150023;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 81246 81860 . - . ID=Physo142471;Parent=Physo142471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 81246 81860 . - 0 ID=Physo142471;Parent=Physo142471;rank=1 scaffold_115 . exon 81246 81860 . - . ID=Physo142471.1;Parent=Physo142471;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 83485 84119 . - . ID=Physo142472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150024;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 83485 84119 . - . ID=Physo142472;Parent=Physo142472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 83485 83516 . - 0 ID=Physo142472;Parent=Physo142472;rank=2 scaffold_115 . exon 83485 83516 . - . ID=Physo142472.2;Parent=Physo142472;constitutive=1;ensembl_phase=1;rank=2 scaffold_115 . CDS 83606 84119 . - 0 ID=Physo142472;Parent=Physo142472;rank=1 scaffold_115 . exon 83606 84119 . - . ID=Physo142472.1;Parent=Physo142472;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 ensembl protein_coding_gene 84232 84798 . - . ID=Physo142473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150025;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 84232 84798 . - . ID=Physo142473;Parent=Physo142473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 84232 84798 . - 0 ID=Physo142473;Parent=Physo142473;rank=1 scaffold_115 . exon 84232 84798 . - . ID=Physo142473.1;Parent=Physo142473;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 85917 86663 . - . ID=Physo142474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150026;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 85917 86663 . - . ID=Physo142474;Parent=Physo142474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 85917 86663 . - 0 ID=Physo142474;Parent=Physo142474;rank=1 scaffold_115 . exon 85917 86663 . - . ID=Physo142474.1;Parent=Physo142474;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 87206 89064 . - . ID=Physo142475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150027;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 87206 89064 . - . ID=Physo142475;Parent=Physo142475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 87206 87760 . - 0 ID=Physo142475;Parent=Physo142475;rank=3 scaffold_115 . exon 87206 87760 . - . ID=Physo142475.3;Parent=Physo142475;constitutive=1;rank=3 scaffold_115 . CDS 88055 88652 . - 0 ID=Physo142475;Parent=Physo142475;rank=2 scaffold_115 . CDS 88865 89064 . - 0 ID=Physo142475;Parent=Physo142475;rank=1 scaffold_115 . repeat_region 96431 96438 . ? . description=dust scaffold_115 . repeat_region 96473 96488 . ? . description=dust scaffold_115 . exon 88055 88652 . - . ID=Physo142475.2;Parent=Physo142475;constitutive=1;ensembl_phase=2;rank=2 scaffold_115 . exon 88865 89064 . - . ID=Physo142475.1;Parent=Physo142475;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 ensembl protein_coding_gene 92168 95926 . + . ID=Physo142476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150028;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 92168 95926 . + . ID=Physo142476;Parent=Physo142476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 92168 92346 . + 0 ID=Physo142476;Parent=Physo142476;rank=1 scaffold_115 . exon 92168 92346 . + . ID=Physo142476.1;Parent=Physo142476;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 . CDS 92422 92542 . + 0 ID=Physo142476;Parent=Physo142476;rank=2 scaffold_115 . exon 92422 92542 . + . ID=Physo142476.2;Parent=Physo142476;constitutive=1;ensembl_phase=2;rank=2 scaffold_115 . CDS 92607 92757 . + 0 ID=Physo142476;Parent=Physo142476;rank=3 scaffold_115 . exon 92607 92757 . + . ID=Physo142476.3;Parent=Physo142476;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_115 . CDS 92838 95926 . + 0 ID=Physo142476;Parent=Physo142476;rank=4 scaffold_115 . exon 92838 95926 . + . ID=Physo142476.4;Parent=Physo142476;constitutive=1;ensembl_phase=1;rank=4 scaffold_115 ensembl protein_coding_gene 96005 96874 . - . ID=Physo142477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150029;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 96005 96874 . - . ID=Physo142477;Parent=Physo142477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 96005 96196 . - 0 ID=Physo142477;Parent=Physo142477;rank=4 scaffold_115 . exon 96005 96196 . - . ID=Physo142477.4;Parent=Physo142477;constitutive=1;rank=4 scaffold_115 . CDS 96278 96420 . - 0 ID=Physo142477;Parent=Physo142477;rank=3 scaffold_115 . exon 96278 96420 . - . ID=Physo142477.3;Parent=Physo142477;constitutive=1;ensembl_phase=1;rank=3 scaffold_115 . CDS 96511 96554 . - 0 ID=Physo142477;Parent=Physo142477;rank=2 scaffold_115 . exon 96511 96554 . - . ID=Physo142477.2;Parent=Physo142477;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_115 . CDS 96630 96874 . - 0 ID=Physo142477;Parent=Physo142477;rank=1 scaffold_115 . exon 96630 96874 . - . ID=Physo142477.1;Parent=Physo142477;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 . biological_region 97248 97249 0.999 + . logic_name=eponine scaffold_115 . biological_region 98220 98221 0.999 + . logic_name=eponine scaffold_115 . biological_region 98974 98976 0.999 + . logic_name=eponine scaffold_115 . biological_region 104040 104040 0.999 - . logic_name=eponine scaffold_115 . biological_region 104618 104619 0.999 + . logic_name=eponine scaffold_115 . biological_region 104631 104638 0.999 + . logic_name=eponine scaffold_115 . biological_region 104670 104677 0.999 + . logic_name=eponine scaffold_115 . biological_region 104949 104955 0.999 - . logic_name=eponine scaffold_115 . biological_region 105004 105010 0.999 + . logic_name=eponine scaffold_115 . biological_region 105026 105029 0.999 + . logic_name=eponine scaffold_115 . biological_region 105033 105037 0.999 + . logic_name=eponine scaffold_115 . biological_region 105047 105051 0.999 - . logic_name=eponine scaffold_115 . biological_region 105067 105069 0.999 - . logic_name=eponine scaffold_115 . biological_region 105095 105097 0.999 - . logic_name=eponine scaffold_115 ensembl protein_coding_gene 97061 98558 . - . ID=Physo142478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150030;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 97061 98558 . - . ID=Physo142478;Parent=Physo142478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 97061 98063 . - 0 ID=Physo142478;Parent=Physo142478;rank=2 scaffold_115 . exon 97061 98063 . - . ID=Physo142478.2;Parent=Physo142478;constitutive=1;ensembl_phase=2;rank=2 scaffold_115 . CDS 98140 98558 . - 0 ID=Physo142478;Parent=Physo142478;rank=1 scaffold_115 . exon 98140 98558 . - . ID=Physo142478.1;Parent=Physo142478;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 ensembl protein_coding_gene 98980 100580 . + . ID=Physo142479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150031;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 98980 100580 . + . ID=Physo142479;Parent=Physo142479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 98980 99591 . + 0 ID=Physo142479;Parent=Physo142479;rank=1 scaffold_115 . exon 98980 99591 . + . ID=Physo142479.1;Parent=Physo142479;constitutive=1;rank=1 scaffold_115 . CDS 99658 99762 . + 0 ID=Physo142479;Parent=Physo142479;rank=2 scaffold_115 . exon 99658 99762 . + . ID=Physo142479.2;Parent=Physo142479;constitutive=1;rank=2 scaffold_115 . CDS 99834 100580 . + 0 ID=Physo142479;Parent=Physo142479;rank=3 scaffold_115 . exon 99834 100580 . + . ID=Physo142479.3;Parent=Physo142479;constitutive=1;rank=3 scaffold_115 ensembl protein_coding_gene 100656 105146 . - . ID=Physo142480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150032;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 100656 105146 . - . ID=Physo142480;Parent=Physo142480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 100656 105146 . - 0 ID=Physo142480;Parent=Physo142480;rank=1 scaffold_115 . exon 100656 105146 . - . ID=Physo142480.1;Parent=Physo142480;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 105617 107931 . + . ID=Physo158545;biotype=protein_coding;external_name=C_scaffold_115000011;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 105617 107931 . + . ID=Physo158545;Parent=Physo158545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 105617 105793 . + 0 ID=Physo158545;Parent=Physo158545;rank=1 scaffold_115 . exon 105617 105793 . + . ID=Physo158545.1;Parent=Physo158545;constitutive=1;rank=1 scaffold_115 . CDS 105870 106932 . + 0 ID=Physo158545;Parent=Physo158545;rank=2 scaffold_115 . exon 105870 106932 . + . ID=Physo158545.2;Parent=Physo158545;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_115 . CDS 107203 107424 . + 0 ID=Physo158545;Parent=Physo158545;rank=3 scaffold_115 . CDS 107582 107931 . + 0 ID=Physo158545;Parent=Physo158545;rank=4 scaffold_115 . repeat_region 110891 110901 . ? . description=dust scaffold_115 ensembl protein_coding_gene 116162 117073 . + . ID=Physo109478;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1150003;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 116162 117073 . + . ID=Physo109478;Parent=Physo109478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 116162 117073 . + 0 ID=Physo109478;Parent=Physo109478;rank=1 scaffold_115 . exon 116162 117073 . + . ID=Physo109478.1;Parent=Physo109478;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 109622 110742 . + . ID=Physo142483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150035;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 109622 110742 . + . ID=Physo142483;Parent=Physo142483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 109622 110058 . + 0 ID=Physo142483;Parent=Physo142483;rank=1 scaffold_115 . exon 109622 110058 . + . ID=Physo142483.1;Parent=Physo142483;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 . CDS 110146 110212 . + 0 ID=Physo142483;Parent=Physo142483;rank=2 scaffold_115 . exon 110146 110212 . + . ID=Physo142483.2;Parent=Physo142483;constitutive=1;ensembl_phase=2;rank=2 scaffold_115 . CDS 110305 110742 . + 0 ID=Physo142483;Parent=Physo142483;rank=3 scaffold_115 . exon 110305 110742 . + . ID=Physo142483.3;Parent=Physo142483;constitutive=1;rank=3 scaffold_115 ensembl protein_coding_gene 111019 111792 . - . ID=Physo142484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150036;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 111019 111792 . - . ID=Physo142484;Parent=Physo142484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 111019 111792 . - 0 ID=Physo142484;Parent=Physo142484;rank=1 scaffold_115 . exon 111019 111792 . - . ID=Physo142484.1;Parent=Physo142484;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 113457 115657 . + . ID=Physo142485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150037;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 113457 115657 . + . ID=Physo142485;Parent=Physo142485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 113457 113656 . + 0 ID=Physo142485;Parent=Physo142485;rank=1 scaffold_115 . exon 113457 113656 . + . ID=Physo142485.1;Parent=Physo142485;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_115 . CDS 113735 113858 . + 0 ID=Physo142485;Parent=Physo142485;rank=2 scaffold_115 . exon 113735 113858 . + . ID=Physo142485.2;Parent=Physo142485;constitutive=1;ensembl_phase=2;rank=2 scaffold_115 . CDS 113935 114982 . + 0 ID=Physo142485;Parent=Physo142485;rank=3 scaffold_115 . exon 113935 114982 . + . ID=Physo142485.3;Parent=Physo142485;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_115 . CDS 115193 115461 . + 0 ID=Physo142485;Parent=Physo142485;rank=4 scaffold_115 . exon 115193 115461 . + . ID=Physo142485.4;Parent=Physo142485;constitutive=1;ensembl_phase=1;rank=4 scaffold_115 . CDS 115547 115657 . + 0 ID=Physo142485;Parent=Physo142485;rank=5 scaffold_115 . exon 115547 115657 . + . ID=Physo142485.5;Parent=Physo142485;constitutive=1;rank=5 scaffold_115 . exon 107203 107424 . + . ID=Physo158545.3;Parent=Physo158545;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_115 . exon 107582 107931 . + . ID=Physo158545.4;Parent=Physo158545;constitutive=1;ensembl_phase=1;rank=4 scaffold_115 ensembl protein_coding_gene 108044 109174 . - . ID=Physo158547;biotype=protein_coding;external_name=C_scaffold_115000013;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 108044 109174 . - . ID=Physo158547;Parent=Physo158547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 108044 108174 . - 0 ID=Physo158547;Parent=Physo158547;rank=3 scaffold_115 . exon 108044 108174 . - . ID=Physo158547.3;Parent=Physo158547;constitutive=1;ensembl_phase=1;rank=3 scaffold_115 . CDS 108214 108534 . - 0 ID=Physo158547;Parent=Physo158547;rank=2 scaffold_115 . exon 108214 108534 . - . ID=Physo158547.2;Parent=Physo158547;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_115 . CDS 108583 109174 . - 0 ID=Physo158547;Parent=Physo158547;rank=1 scaffold_115 . exon 108583 109174 . - . ID=Physo158547.1;Parent=Physo158547;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 . repeat_region 119004 119111 . ? . description=trf scaffold_115 . biological_region 121956 121958 0.999 + . logic_name=eponine scaffold_115 . biological_region 122034 122037 0.999 + . logic_name=eponine scaffold_115 . biological_region 122064 122074 0.999 - . logic_name=eponine scaffold_115 . biological_region 122160 122162 0.999 - . logic_name=eponine scaffold_115 . biological_region 123754 123757 0.999 - . logic_name=eponine scaffold_115 . biological_region 124424 124425 0.999 - . logic_name=eponine scaffold_115 . biological_region 124496 124501 0.999 - . logic_name=eponine scaffold_115 . biological_region 125462 125464 0.999 + . logic_name=eponine scaffold_115 . repeat_region 125467 125534 . ? . description=trf scaffold_115 ensembl protein_coding_gene 121156 121793 . - . ID=Physo142487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150039;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 121156 121793 . - . ID=Physo142487;Parent=Physo142487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 121156 121569 . - 0 ID=Physo142487;Parent=Physo142487;rank=2 scaffold_115 . exon 121156 121569 . - . ID=Physo142487.2;Parent=Physo142487;constitutive=1;rank=2 scaffold_115 . CDS 121644 121793 . - 0 ID=Physo142487;Parent=Physo142487;rank=1 scaffold_115 . exon 121644 121793 . - . ID=Physo142487.1;Parent=Physo142487;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 121957 123346 . + . ID=Physo142488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150040;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 121957 123346 . + . ID=Physo142488;Parent=Physo142488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 121957 123288 . + 0 ID=Physo142488;Parent=Physo142488;rank=1 scaffold_115 . exon 121957 123346 . + . ID=Physo142488.1;Parent=Physo142488;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_115 ensembl protein_coding_gene 124327 125564 . + . ID=Physo142489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150041;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 124327 125564 . + . ID=Physo142489;Parent=Physo142489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 124327 125289 . + 0 ID=Physo142489;Parent=Physo142489;rank=1 scaffold_115 . exon 124327 125289 . + . ID=Physo142489.1;Parent=Physo142489;constitutive=1;rank=1 scaffold_115 . CDS 125493 125564 . + 0 ID=Physo142489;Parent=Physo142489;rank=2 scaffold_115 . exon 125493 125564 . + . ID=Physo142489.2;Parent=Physo142489;constitutive=1;rank=2 scaffold_115 . repeat_region 129771 129823 . ? . description=dust scaffold_115 ensembl protein_coding_gene 127019 129720 . + . ID=Physo142490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150042;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 127019 129720 . + . ID=Physo142490;Parent=Physo142490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 127019 127076 . + 0 ID=Physo142490;Parent=Physo142490;rank=1 scaffold_115 . exon 127019 127076 . + . ID=Physo142490.1;Parent=Physo142490;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 . CDS 127204 127370 . + 0 ID=Physo142490;Parent=Physo142490;rank=2 scaffold_115 . exon 127204 127370 . + . ID=Physo142490.2;Parent=Physo142490;constitutive=1;ensembl_phase=1;rank=2 scaffold_115 . CDS 127543 127959 . + 0 ID=Physo142490;Parent=Physo142490;rank=3 scaffold_115 . exon 127543 127959 . + . ID=Physo142490.3;Parent=Physo142490;constitutive=1;rank=3 scaffold_115 . CDS 128093 129107 . + 0 ID=Physo142490;Parent=Physo142490;rank=4 scaffold_115 . exon 128093 129107 . + . ID=Physo142490.4;Parent=Physo142490;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_115 . CDS 129362 129720 . + 0 ID=Physo142490;Parent=Physo142490;rank=5 scaffold_115 . exon 129362 129720 . + . ID=Physo142490.5;Parent=Physo142490;constitutive=1;ensembl_phase=1;rank=5 scaffold_115 ensembl protein_coding_gene 132948 133565 . - . ID=Physo142491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150043;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 132948 133565 . - . ID=Physo142491;Parent=Physo142491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 132948 133565 . - 0 ID=Physo142491;Parent=Physo142491;rank=1 scaffold_115 . exon 132948 133565 . - . ID=Physo142491.1;Parent=Physo142491;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 134364 136731 . - . ID=Physo142492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150044;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 134364 136731 . - . ID=Physo142492;Parent=Physo142492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . exon 134364 134679 . - . ID=Physo142492.6;Parent=Physo142492;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_115 . CDS 134449 134679 . - 0 ID=Physo142492;Parent=Physo142492;rank=6 scaffold_115 . CDS 134751 134879 . - 0 ID=Physo142492;Parent=Physo142492;rank=5 scaffold_115 . exon 134751 134879 . - . ID=Physo142492.5;Parent=Physo142492;constitutive=1;rank=5 scaffold_115 . CDS 134960 135779 . - 0 ID=Physo142492;Parent=Physo142492;rank=4 scaffold_115 . exon 134960 135779 . - . ID=Physo142492.4;Parent=Physo142492;constitutive=1;ensembl_phase=2;rank=4 scaffold_115 . CDS 135859 136140 . - 0 ID=Physo142492;Parent=Physo142492;rank=3 scaffold_115 . exon 135859 136140 . - . ID=Physo142492.3;Parent=Physo142492;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_115 . CDS 136212 136288 . - 0 ID=Physo142492;Parent=Physo142492;rank=2 scaffold_115 . CDS 136369 136731 . - 0 ID=Physo142492;Parent=Physo142492;rank=1 scaffold_115 . repeat_region 138424 138467 . ? . description=trf scaffold_115 . repeat_region 138424 138467 . ? . description=trf scaffold_115 . biological_region 138603 138608 0.999 - . logic_name=eponine scaffold_115 . biological_region 138622 138625 0.999 + . logic_name=eponine scaffold_115 . biological_region 138655 138664 0.999 - . logic_name=eponine scaffold_115 . biological_region 138715 138718 0.999 + . logic_name=eponine scaffold_115 . biological_region 138740 138750 0.999 + . logic_name=eponine scaffold_115 . repeat_region 138774 138793 . ? . description=trf scaffold_115 . biological_region 138785 138787 0.999 + . logic_name=eponine scaffold_115 . biological_region 138865 138866 0.999 + . logic_name=eponine scaffold_115 . biological_region 138903 138910 0.999 + . logic_name=eponine scaffold_115 . biological_region 138987 138991 0.999 - . logic_name=eponine scaffold_115 . biological_region 139888 139894 0.999 - . logic_name=eponine scaffold_115 . biological_region 139969 139971 0.999 + . logic_name=eponine scaffold_115 . biological_region 142474 142474 0.999 - . logic_name=eponine scaffold_115 . biological_region 145191 145196 0.999 - . logic_name=eponine scaffold_115 . biological_region 145322 145327 0.999 + . logic_name=eponine scaffold_115 . exon 136212 136288 . - . ID=Physo142492.2;Parent=Physo142492;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_115 . exon 136369 136731 . - . ID=Physo142492.1;Parent=Physo142492;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 136862 142719 . - . ID=Physo142493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150045;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 136862 142719 . - . ID=Physo142493;Parent=Physo142493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 136862 137074 . - 0 ID=Physo142493;Parent=Physo142493;rank=11 scaffold_115 . exon 136862 137074 . - . ID=Physo142493.11;Parent=Physo142493;constitutive=1;rank=11 scaffold_115 . CDS 137148 137317 . - 0 ID=Physo142493;Parent=Physo142493;rank=10 scaffold_115 . exon 137148 137317 . - . ID=Physo142493.10;Parent=Physo142493;constitutive=1;ensembl_phase=1;rank=10 scaffold_115 . CDS 137384 137598 . - 0 ID=Physo142493;Parent=Physo142493;rank=9 scaffold_115 . exon 137384 137598 . - . ID=Physo142493.9;Parent=Physo142493;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_115 . CDS 137625 137636 . - 0 ID=Physo142493;Parent=Physo142493;rank=8 scaffold_115 . exon 137625 137636 . - . ID=Physo142493.8;Parent=Physo142493;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_115 . CDS 137674 137927 . - 0 ID=Physo142493;Parent=Physo142493;rank=7 scaffold_115 . exon 137674 137927 . - . ID=Physo142493.7;Parent=Physo142493;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_115 . CDS 138009 138100 . - 0 ID=Physo142493;Parent=Physo142493;rank=6 scaffold_115 . exon 138009 138100 . - . ID=Physo142493.6;Parent=Physo142493;constitutive=1;ensembl_phase=1;rank=6 scaffold_115 . CDS 138180 138257 . - 0 ID=Physo142493;Parent=Physo142493;rank=5 scaffold_115 . exon 138180 138257 . - . ID=Physo142493.5;Parent=Physo142493;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_115 . CDS 138543 139058 . - 0 ID=Physo142493;Parent=Physo142493;rank=4 scaffold_115 . exon 138543 139058 . - . ID=Physo142493.4;Parent=Physo142493;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_115 . CDS 139398 139470 . - 0 ID=Physo142493;Parent=Physo142493;rank=3 scaffold_115 . exon 139398 139470 . - . ID=Physo142493.3;Parent=Physo142493;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_115 . CDS 139543 141366 . - 0 ID=Physo142493;Parent=Physo142493;rank=2 scaffold_115 . exon 139543 141366 . - . ID=Physo142493.2;Parent=Physo142493;constitutive=1;rank=2 scaffold_115 . CDS 141565 142719 . - 0 ID=Physo142493;Parent=Physo142493;rank=1 scaffold_115 . exon 141565 142719 . - . ID=Physo142493.1;Parent=Physo142493;constitutive=1;rank=1 scaffold_115 ensembl protein_coding_gene 144048 147163 . + . ID=Physo142494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150046;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 144048 147163 . + . ID=Physo142494;Parent=Physo142494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 144048 145493 . + 0 ID=Physo142494;Parent=Physo142494;rank=1 scaffold_115 . exon 144048 145493 . + . ID=Physo142494.1;Parent=Physo142494;constitutive=1;rank=1 scaffold_115 . CDS 145680 146327 . + 0 ID=Physo142494;Parent=Physo142494;rank=2 scaffold_115 . CDS 146380 146559 . + 0 ID=Physo142494;Parent=Physo142494;rank=3 scaffold_115 . CDS 146607 146736 . + 0 ID=Physo142494;Parent=Physo142494;rank=4 scaffold_115 . CDS 147027 147163 . + 0 ID=Physo142494;Parent=Physo142494;rank=5 scaffold_115 . repeat_region 146773 146781 . ? . description=dust scaffold_115 . repeat_region 150425 150437 . ? . description=dust scaffold_115 . exon 145680 146327 . + . ID=Physo142494.2;Parent=Physo142494;constitutive=1;rank=2 scaffold_115 . exon 146380 146559 . + . ID=Physo142494.3;Parent=Physo142494;constitutive=1;rank=3 scaffold_115 . exon 146607 146736 . + . ID=Physo142494.4;Parent=Physo142494;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_115 . exon 147027 147163 . + . ID=Physo142494.5;Parent=Physo142494;constitutive=1;ensembl_phase=1;rank=5 scaffold_115 ensembl protein_coding_gene 147423 148798 . - . ID=Physo142495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150047;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 147423 148798 . - . ID=Physo142495;Parent=Physo142495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 147423 147679 . - 0 ID=Physo142495;Parent=Physo142495;rank=6 scaffold_115 . exon 147423 147679 . - . ID=Physo142495.6;Parent=Physo142495;constitutive=1;ensembl_phase=1;rank=6 scaffold_115 . CDS 147739 147842 . - 0 ID=Physo142495;Parent=Physo142495;rank=5 scaffold_115 . exon 147739 147842 . - . ID=Physo142495.5;Parent=Physo142495;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_115 . CDS 147914 148041 . - 0 ID=Physo142495;Parent=Physo142495;rank=4 scaffold_115 . exon 147914 148041 . - . ID=Physo142495.4;Parent=Physo142495;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_115 . CDS 148083 148232 . - 0 ID=Physo142495;Parent=Physo142495;rank=3 scaffold_115 . exon 148083 148232 . - . ID=Physo142495.3;Parent=Physo142495;constitutive=1;rank=3 scaffold_115 . CDS 148418 148695 . - 0 ID=Physo142495;Parent=Physo142495;rank=2 scaffold_115 . exon 148418 148695 . - . ID=Physo142495.2;Parent=Physo142495;constitutive=1;ensembl_phase=1;rank=2 scaffold_115 . CDS 148777 148798 . - 0 ID=Physo142495;Parent=Physo142495;rank=1 scaffold_115 . exon 148777 148798 . - . ID=Physo142495.1;Parent=Physo142495;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 ensembl protein_coding_gene 149072 150676 . + . ID=Physo142496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150048;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 149072 150676 . + . ID=Physo142496;Parent=Physo142496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 149072 149111 . + 0 ID=Physo142496;Parent=Physo142496;rank=1 scaffold_115 . exon 149072 149111 . + . ID=Physo142496.1;Parent=Physo142496;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_115 . CDS 149176 149329 . + 0 ID=Physo142496;Parent=Physo142496;rank=2 scaffold_115 . exon 149176 149329 . + . ID=Physo142496.2;Parent=Physo142496;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_115 . CDS 149358 149556 . + 0 ID=Physo142496;Parent=Physo142496;rank=3 scaffold_115 . exon 149358 149556 . + . ID=Physo142496.3;Parent=Physo142496;constitutive=1;ensembl_phase=2;rank=3 scaffold_115 . CDS 149671 149840 . + 0 ID=Physo142496;Parent=Physo142496;rank=4 scaffold_115 . exon 149671 149840 . + . ID=Physo142496.4;Parent=Physo142496;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_115 . CDS 150039 150372 . + 0 ID=Physo142496;Parent=Physo142496;rank=5 scaffold_115 . exon 150039 150372 . + . ID=Physo142496.5;Parent=Physo142496;constitutive=1;ensembl_phase=2;rank=5 scaffold_115 . CDS 150581 150676 . + 0 ID=Physo142496;Parent=Physo142496;rank=6 scaffold_115 . exon 150581 150676 . + . ID=Physo142496.6;Parent=Physo142496;constitutive=1;rank=6 scaffold_115 . repeat_region 154738 156288 . ? . description=trf scaffold_115 . repeat_region 154738 156289 . ? . description=trf scaffold_115 . biological_region 155521 155522 0.999 - . logic_name=eponine scaffold_115 . biological_region 155858 155859 0.999 - . logic_name=eponine scaffold_115 . biological_region 156028 156030 0.999 - . logic_name=eponine scaffold_115 . repeat_region 168313 168321 . ? . description=dust scaffold_115 . repeat_region 169556 169576 . ? . description=dust scaffold_115 . repeat_region 172559 172618 . ? . description=dust scaffold_115 . repeat_region 173804 173938 . - . description=GypsyPi-1c_I-int scaffold_115 . repeat_region 174411 176038 . - . description=GypsyPi-1c_I-int scaffold_115 ensembl protein_coding_gene 173842 175873 . - . ID=Physo142497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1150049;logic_name=jgi_physo1_1 scaffold_115 ensembl transcript 173842 175873 . - . ID=Physo142497;Parent=Physo142497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_115 . CDS 173842 174189 . - 0 ID=Physo142497;Parent=Physo142497;rank=4 scaffold_115 . exon 173842 174189 . - . ID=Physo142497.4;Parent=Physo142497;constitutive=1;rank=4 scaffold_115 . CDS 174392 174573 . - 0 ID=Physo142497;Parent=Physo142497;rank=3 scaffold_115 . exon 174392 174573 . - . ID=Physo142497.3;Parent=Physo142497;constitutive=1;ensembl_phase=1;rank=3 scaffold_115 . CDS 174825 174970 . - 0 ID=Physo142497;Parent=Physo142497;rank=2 scaffold_115 . CDS 175017 175873 . - 0 ID=Physo142497;Parent=Physo142497;rank=1 scaffold_115 . biological_region 174896 174897 0.999 + . logic_name=eponine scaffold_115 . biological_region 176112 176117 0.999 + . logic_name=eponine scaffold_115 . repeat_region 176121 176162 . ? . description=trf scaffold_115 . biological_region 176130 176135 0.999 - . logic_name=eponine scaffold_115 . biological_region 176214 176219 0.999 + . logic_name=eponine scaffold_115 . biological_region 176223 176223 0.999 - . logic_name=eponine scaffold_115 . biological_region 176299 176301 0.999 - . logic_name=eponine scaffold_115 . repeat_region 176305 176359 . ? . description=trf scaffold_115 . biological_region 176958 176958 0.999 + . logic_name=eponine scaffold_115 . biological_region 176983 176984 0.999 - . logic_name=eponine scaffold_115 . repeat_region 183917 183955 . ? . description=trf scaffold_115 . repeat_region 183955 184017 . ? . description=trf scaffold_115 . repeat_region 183955 184017 . + . description=(TA)n scaffold_115 . exon 174825 174970 . - . ID=Physo142497.2;Parent=Physo142497;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_115 . exon 175017 175873 . - . ID=Physo142497.1;Parent=Physo142497;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_120 1 188768 scaffold_120 . repeat_region 1 3177 . ? . description=trf scaffold_120 . repeat_region 3178 5238 . ? . description=dust scaffold_120 . repeat_region 5239 6987 . ? . description=trf scaffold_120 . repeat_region 6988 13173 . ? . description=dust scaffold_120 . biological_region 15289 15292 0.999 - . logic_name=eponine scaffold_120 ensembl protein_coding_gene 19385 20798 . + . ID=Physo142691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200001;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 19385 20798 . + . ID=Physo142691;Parent=Physo142691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 19385 19747 . + 0 ID=Physo142691;Parent=Physo142691;rank=1 scaffold_120 . exon 19385 19747 . + . ID=Physo142691.1;Parent=Physo142691;constitutive=1;rank=1 scaffold_120 . CDS 19909 20796 . + 0 ID=Physo142691;Parent=Physo142691;rank=2 scaffold_120 . repeat_region 20243 20268 . ? . description=trf scaffold_120 . repeat_region 29161 29209 . ? . description=trf scaffold_120 ensembl protein_coding_gene 20934 21980 . - . ID=Physo109500;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1200001;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 20934 21980 . - . ID=Physo109500;Parent=Physo109500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 20934 21980 . - 0 ID=Physo109500;Parent=Physo109500;rank=1 scaffold_120 . exon 20934 21980 . - . ID=Physo109500.1;Parent=Physo109500;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 22211 24961 . - . ID=Physo109501;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1200002;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 22211 24961 . - . ID=Physo109501;Parent=Physo109501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 22211 23146 . - 0 ID=Physo109501;Parent=Physo109501;rank=2 scaffold_120 . exon 22211 23146 . - . ID=Physo109501.2;Parent=Physo109501;constitutive=1;rank=2 scaffold_120 . CDS 23174 24961 . - 0 ID=Physo109501;Parent=Physo109501;rank=1 scaffold_120 . exon 23174 24961 . - . ID=Physo109501.1;Parent=Physo109501;constitutive=1;rank=1 scaffold_120 . exon 19909 20798 . + . ID=Physo142691.2;Parent=Physo142691;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_120 . repeat_region 33018 33165 . + . description=(CTG)n scaffold_120 . repeat_region 33043 33109 . ? . description=dust scaffold_120 . biological_region 33278 33283 0.999 + . logic_name=eponine scaffold_120 ensembl protein_coding_gene 36840 37902 . + . ID=Physo109502;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1200003;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 36840 37902 . + . ID=Physo109502;Parent=Physo109502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . exon 36840 36912 . + . ID=Physo109502.1;Parent=Physo109502;constitutive=1;ensembl_phase=-1;rank=1 scaffold_120 . CDS 36856 36912 . + 0 ID=Physo109502;Parent=Physo109502;rank=1 scaffold_120 . CDS 37013 37188 . + 0 ID=Physo109502;Parent=Physo109502;rank=2 scaffold_120 . exon 37013 37188 . + . ID=Physo109502.2;Parent=Physo109502;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_120 . CDS 37277 37340 . + 0 ID=Physo109502;Parent=Physo109502;rank=3 scaffold_120 . exon 37277 37340 . + . ID=Physo109502.3;Parent=Physo109502;constitutive=1;ensembl_phase=2;rank=3 scaffold_120 . CDS 37452 37521 . + 0 ID=Physo109502;Parent=Physo109502;rank=4 scaffold_120 . exon 37452 37521 . + . ID=Physo109502.4;Parent=Physo109502;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_120 . CDS 37607 37691 . + 0 ID=Physo109502;Parent=Physo109502;rank=5 scaffold_120 . exon 37607 37691 . + . ID=Physo109502.5;Parent=Physo109502;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_120 . CDS 37776 37824 . + 0 ID=Physo109502;Parent=Physo109502;rank=6 scaffold_120 . exon 37776 37902 . + . ID=Physo109502.6;Parent=Physo109502;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_120 ensembl protein_coding_gene 30397 31594 . + . ID=Physo142694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200004;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 30397 31594 . + . ID=Physo142694;Parent=Physo142694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . exon 30397 30514 . + . ID=Physo142694.1;Parent=Physo142694;constitutive=1;ensembl_phase=-1;rank=1 scaffold_120 . CDS 30455 30514 . + 0 ID=Physo142694;Parent=Physo142694;rank=1 scaffold_120 . CDS 30737 31425 . + 0 ID=Physo142694;Parent=Physo142694;rank=2 scaffold_120 . exon 30737 31425 . + . ID=Physo142694.2;Parent=Physo142694;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_120 . CDS 31528 31594 . + 0 ID=Physo142694;Parent=Physo142694;rank=3 scaffold_120 . exon 31528 31594 . + . ID=Physo142694.3;Parent=Physo142694;constitutive=1;ensembl_phase=2;rank=3 scaffold_120 ensembl protein_coding_gene 39357 41537 . + . ID=Physo158609;biotype=protein_coding;external_name=C_scaffold_120000002;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 39357 41537 . + . ID=Physo158609;Parent=Physo158609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 39357 41537 . + 0 ID=Physo158609;Parent=Physo158609;rank=1 scaffold_120 . exon 39357 41537 . + . ID=Physo158609.1;Parent=Physo158609;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 46850 47989 . + . ID=Physo142698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200008;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 46850 47989 . + . ID=Physo142698;Parent=Physo142698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . exon 46850 47225 . + . ID=Physo142698.1;Parent=Physo142698;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_120 . exon 47302 47532 . + . ID=Physo142698.2;Parent=Physo142698;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_120 . CDS 47310 47532 . + 0 ID=Physo142698;Parent=Physo142698;rank=1 scaffold_120 . CDS 47613 47989 . + 0 ID=Physo142698;Parent=Physo142698;rank=2 scaffold_120 . exon 47613 47989 . + . ID=Physo142698.3;Parent=Physo142698;constitutive=1;ensembl_phase=1;rank=3 scaffold_120 ensembl protein_coding_gene 48251 49711 . - . ID=Physo142699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200009;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 48251 49711 . - . ID=Physo142699;Parent=Physo142699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 48251 48991 . - 0 ID=Physo142699;Parent=Physo142699;rank=3 scaffold_120 . exon 48251 48991 . - . ID=Physo142699.3;Parent=Physo142699;constitutive=1;rank=3 scaffold_120 . CDS 49077 49280 . - 0 ID=Physo142699;Parent=Physo142699;rank=2 scaffold_120 . exon 49077 49280 . - . ID=Physo142699.2;Parent=Physo142699;constitutive=1;rank=2 scaffold_120 . CDS 49682 49711 . - 0 ID=Physo142699;Parent=Physo142699;rank=1 scaffold_120 ensembl protein_coding_gene 42399 46671 . - . ID=Physo158611;biotype=protein_coding;external_name=C_scaffold_120000004;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 42399 46671 . - . ID=Physo158611;Parent=Physo158611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 42399 42880 . - 0 ID=Physo158611;Parent=Physo158611;rank=15 scaffold_120 . exon 42399 42880 . - . ID=Physo158611.15;Parent=Physo158611;constitutive=1;ensembl_phase=1;rank=15 scaffold_120 . CDS 42965 43127 . - 0 ID=Physo158611;Parent=Physo158611;rank=14 scaffold_120 . exon 42965 43127 . - . ID=Physo158611.14;Parent=Physo158611;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_120 . CDS 43201 43282 . - 0 ID=Physo158611;Parent=Physo158611;rank=13 scaffold_120 . exon 43201 43282 . - . ID=Physo158611.13;Parent=Physo158611;constitutive=1;ensembl_phase=2;rank=13 scaffold_120 . CDS 43345 43508 . - 0 ID=Physo158611;Parent=Physo158611;rank=12 scaffold_120 . exon 43345 43508 . - . ID=Physo158611.12;Parent=Physo158611;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_120 . CDS 43575 43831 . - 0 ID=Physo158611;Parent=Physo158611;rank=11 scaffold_120 . exon 43575 43831 . - . ID=Physo158611.11;Parent=Physo158611;constitutive=1;ensembl_phase=1;rank=11 scaffold_120 . CDS 43856 44015 . - 0 ID=Physo158611;Parent=Physo158611;rank=10 scaffold_120 . exon 43856 44015 . - . ID=Physo158611.10;Parent=Physo158611;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_120 . CDS 44175 44252 . - 0 ID=Physo158611;Parent=Physo158611;rank=9 scaffold_120 . exon 44175 44252 . - . ID=Physo158611.9;Parent=Physo158611;constitutive=1;rank=9 scaffold_120 . CDS 44317 44478 . - 0 ID=Physo158611;Parent=Physo158611;rank=8 scaffold_120 . exon 44317 44478 . - . ID=Physo158611.8;Parent=Physo158611;constitutive=1;rank=8 scaffold_120 . CDS 44646 44766 . - 0 ID=Physo158611;Parent=Physo158611;rank=7 scaffold_120 . exon 44646 44766 . - . ID=Physo158611.7;Parent=Physo158611;constitutive=1;ensembl_phase=2;rank=7 scaffold_120 . CDS 45014 45067 . - 0 ID=Physo158611;Parent=Physo158611;rank=6 scaffold_120 . exon 45014 45067 . - . ID=Physo158611.6;Parent=Physo158611;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_120 . CDS 45312 45406 . - 0 ID=Physo158611;Parent=Physo158611;rank=5 scaffold_120 . exon 45312 45406 . - . ID=Physo158611.5;Parent=Physo158611;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_120 . CDS 45484 45642 . - 0 ID=Physo158611;Parent=Physo158611;rank=4 scaffold_120 . exon 45484 45642 . - . ID=Physo158611.4;Parent=Physo158611;constitutive=1;rank=4 scaffold_120 . CDS 45718 45848 . - 0 ID=Physo158611;Parent=Physo158611;rank=3 scaffold_120 . exon 45718 45848 . - . ID=Physo158611.3;Parent=Physo158611;constitutive=1;ensembl_phase=1;rank=3 scaffold_120 . CDS 45876 45976 . - 0 ID=Physo158611;Parent=Physo158611;rank=2 scaffold_120 . exon 45876 45976 . - . ID=Physo158611.2;Parent=Physo158611;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_120 . CDS 46121 46671 . - 0 ID=Physo158611;Parent=Physo158611;rank=1 scaffold_120 . exon 46121 46671 . - . ID=Physo158611.1;Parent=Physo158611;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 . repeat_region 52675 53934 . ? . description=dust scaffold_120 . repeat_region 53935 55210 . ? . description=dust scaffold_120 . repeat_region 55703 55710 . ? . description=dust scaffold_120 . repeat_region 56227 56240 . ? . description=dust scaffold_120 . exon 49682 49711 . - . ID=Physo142699.1;Parent=Physo142699;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 50176 51366 . + . ID=Physo142700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200010;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 50176 51366 . + . ID=Physo142700;Parent=Physo142700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . exon 50176 51366 . + . ID=Physo142700.1;Parent=Physo142700;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_120 . CDS 50178 50525 . + 0 ID=Physo142700;Parent=Physo142700;rank=1 scaffold_120 ensembl protein_coding_gene 56402 57862 . - . ID=Physo142702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200012;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 56402 57862 . - . ID=Physo142702;Parent=Physo142702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 56402 57142 . - 0 ID=Physo142702;Parent=Physo142702;rank=3 scaffold_120 . exon 56402 57142 . - . ID=Physo142702.3;Parent=Physo142702;constitutive=1;rank=3 scaffold_120 . CDS 57228 57431 . - 0 ID=Physo142702;Parent=Physo142702;rank=2 scaffold_120 . exon 57228 57431 . - . ID=Physo142702.2;Parent=Physo142702;constitutive=1;rank=2 scaffold_120 . CDS 57833 57862 . - 0 ID=Physo142702;Parent=Physo142702;rank=1 scaffold_120 . exon 57833 57862 . - . ID=Physo142702.1;Parent=Physo142702;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 58327 59517 . + . ID=Physo142703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200013;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 58327 59517 . + . ID=Physo142703;Parent=Physo142703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . exon 58327 59517 . + . ID=Physo142703.1;Parent=Physo142703;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_120 . CDS 58329 58676 . + 0 ID=Physo142703;Parent=Physo142703;rank=1 scaffold_120 ensembl protein_coding_gene 55461 56140 . + . ID=Physo158613;biotype=protein_coding;external_name=C_scaffold_120000006;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 55461 56140 . + . ID=Physo158613;Parent=Physo158613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 55461 55683 . + 0 ID=Physo158613;Parent=Physo158613;rank=1 scaffold_120 . exon 55461 55683 . + . ID=Physo158613.1;Parent=Physo158613;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_120 . CDS 55764 55813 . + 0 ID=Physo158613;Parent=Physo158613;rank=2 scaffold_120 . exon 55764 55813 . + . ID=Physo158613.2;Parent=Physo158613;constitutive=1;ensembl_phase=1;rank=2 scaffold_120 . CDS 55883 56140 . + 0 ID=Physo158613;Parent=Physo158613;rank=3 scaffold_120 . exon 55883 56140 . + . ID=Physo158613.3;Parent=Physo158613;constitutive=1;rank=3 scaffold_120 . biological_region 65029 65029 0.999 - . logic_name=eponine scaffold_120 . biological_region 65083 65086 0.999 - . logic_name=eponine scaffold_120 . biological_region 66755 66758 0.999 - . logic_name=eponine scaffold_120 . biological_region 67824 67827 0.999 - . logic_name=eponine scaffold_120 . biological_region 68351 68356 0.999 - . logic_name=eponine scaffold_120 . biological_region 68388 68397 0.999 + . logic_name=eponine scaffold_120 . biological_region 68454 68462 0.999 - . logic_name=eponine scaffold_120 . biological_region 68489 68495 0.999 - . logic_name=eponine scaffold_120 . biological_region 68580 68582 0.999 - . logic_name=eponine scaffold_120 . biological_region 68601 68608 0.999 - . logic_name=eponine scaffold_120 . biological_region 68683 68685 0.999 - . logic_name=eponine scaffold_120 . biological_region 69064 69066 0.999 - . logic_name=eponine scaffold_120 ensembl protein_coding_gene 67266 68054 . + . ID=Physo109503;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1200004;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 67266 68054 . + . ID=Physo109503;Parent=Physo109503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 67266 67310 . + 0 ID=Physo109503;Parent=Physo109503;rank=1 scaffold_120 . exon 67266 67310 . + . ID=Physo109503.1;Parent=Physo109503;constitutive=1;rank=1 scaffold_120 . CDS 67403 67459 . + 0 ID=Physo109503;Parent=Physo109503;rank=2 scaffold_120 . exon 67403 67459 . + . ID=Physo109503.2;Parent=Physo109503;constitutive=1;rank=2 scaffold_120 . CDS 67554 67606 . + 0 ID=Physo109503;Parent=Physo109503;rank=3 scaffold_120 . exon 67554 67606 . + . ID=Physo109503.3;Parent=Physo109503;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_120 . CDS 67676 68054 . + 0 ID=Physo109503;Parent=Physo109503;rank=4 scaffold_120 . exon 67676 68054 . + . ID=Physo109503.4;Parent=Physo109503;constitutive=1;ensembl_phase=2;rank=4 scaffold_120 ensembl protein_coding_gene 66465 67067 . - . ID=Physo142704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200014;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 66465 67067 . - . ID=Physo142704;Parent=Physo142704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 66465 67067 . - 0 ID=Physo142704;Parent=Physo142704;rank=1 scaffold_120 . exon 66465 67067 . - . ID=Physo142704.1;Parent=Physo142704;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 68251 71507 . + . ID=Physo142706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200016;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 68251 71507 . + . ID=Physo142706;Parent=Physo142706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 68251 69727 . + 0 ID=Physo142706;Parent=Physo142706;rank=1 scaffold_120 . exon 68251 69727 . + . ID=Physo142706.1;Parent=Physo142706;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_120 . CDS 70351 70900 . + 0 ID=Physo142706;Parent=Physo142706;rank=2 scaffold_120 . CDS 71169 71304 . + 0 ID=Physo142706;Parent=Physo142706;rank=3 scaffold_120 . CDS 71370 71507 . + 0 ID=Physo142706;Parent=Physo142706;rank=4 scaffold_120 . repeat_region 77273 77333 . ? . description=trf scaffold_120 . repeat_region 77810 77859 . ? . description=dust scaffold_120 . exon 70351 70900 . + . ID=Physo142706.2;Parent=Physo142706;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_120 . exon 71169 71304 . + . ID=Physo142706.3;Parent=Physo142706;constitutive=1;ensembl_phase=2;rank=3 scaffold_120 . exon 71370 71507 . + . ID=Physo142706.4;Parent=Physo142706;constitutive=1;rank=4 scaffold_120 ensembl protein_coding_gene 71624 73339 . - . ID=Physo142707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200017;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 71624 73339 . - . ID=Physo142707;Parent=Physo142707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 71624 73339 . - 0 ID=Physo142707;Parent=Physo142707;rank=1 scaffold_120 . exon 71624 73339 . - . ID=Physo142707.1;Parent=Physo142707;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 73658 74521 . + . ID=Physo142708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200018;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 73658 74521 . + . ID=Physo142708;Parent=Physo142708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 73658 74521 . + 0 ID=Physo142708;Parent=Physo142708;rank=1 scaffold_120 . exon 73658 74521 . + . ID=Physo142708.1;Parent=Physo142708;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 79335 80303 . + . ID=Physo142709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200019;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 79335 80303 . + . ID=Physo142709;Parent=Physo142709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 79335 79696 . + 0 ID=Physo142709;Parent=Physo142709;rank=1 scaffold_120 . exon 79335 79696 . + . ID=Physo142709.1;Parent=Physo142709;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 . CDS 79965 80100 . + 0 ID=Physo142709;Parent=Physo142709;rank=2 scaffold_120 . CDS 80166 80303 . + 0 ID=Physo142709;Parent=Physo142709;rank=3 scaffold_120 . biological_region 81673 81677 0.999 + . logic_name=eponine scaffold_120 . biological_region 83036 83038 0.999 - . logic_name=eponine scaffold_120 . exon 79965 80100 . + . ID=Physo142709.2;Parent=Physo142709;constitutive=1;ensembl_phase=2;rank=2 scaffold_120 . exon 80166 80303 . + . ID=Physo142709.3;Parent=Physo142709;constitutive=1;rank=3 scaffold_120 ensembl protein_coding_gene 80420 82135 . - . ID=Physo142710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200020;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 80420 82135 . - . ID=Physo142710;Parent=Physo142710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 80420 82135 . - 0 ID=Physo142710;Parent=Physo142710;rank=1 scaffold_120 . exon 80420 82135 . - . ID=Physo142710.1;Parent=Physo142710;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 82454 83317 . + . ID=Physo142711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200021;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 82454 83317 . + . ID=Physo142711;Parent=Physo142711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 82454 83317 . + 0 ID=Physo142711;Parent=Physo142711;rank=1 scaffold_120 . exon 82454 83317 . + . ID=Physo142711.1;Parent=Physo142711;constitutive=1;rank=1 scaffold_120 . repeat_region 94813 94820 . ? . description=dust scaffold_120 . repeat_region 95833 95916 . ? . description=trf scaffold_120 . repeat_region 95833 95916 . ? . description=trf scaffold_120 . repeat_region 95841 95913 . ? . description=trf scaffold_120 . repeat_region 95956 95979 . ? . description=trf scaffold_120 . repeat_region 98407 98418 . ? . description=dust scaffold_120 ensembl protein_coding_gene 91011 91905 . + . ID=Physo142712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200022;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 91011 91905 . + . ID=Physo142712;Parent=Physo142712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 91011 91355 . + 0 ID=Physo142712;Parent=Physo142712;rank=1 scaffold_120 . exon 91011 91355 . + . ID=Physo142712.1;Parent=Physo142712;constitutive=1;rank=1 scaffold_120 . CDS 91433 91675 . + 0 ID=Physo142712;Parent=Physo142712;rank=2 scaffold_120 . exon 91433 91905 . + . ID=Physo142712.2;Parent=Physo142712;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_120 ensembl protein_coding_gene 92051 93643 . - . ID=Physo142713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200023;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 92051 93643 . - . ID=Physo142713;Parent=Physo142713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 92051 92128 . - 0 ID=Physo142713;Parent=Physo142713;rank=5 scaffold_120 . exon 92051 92128 . - . ID=Physo142713.5;Parent=Physo142713;constitutive=1;rank=5 scaffold_120 . CDS 92532 92654 . - 0 ID=Physo142713;Parent=Physo142713;rank=4 scaffold_120 . exon 92532 92654 . - . ID=Physo142713.4;Parent=Physo142713;constitutive=1;rank=4 scaffold_120 . CDS 92919 93237 . - 0 ID=Physo142713;Parent=Physo142713;rank=3 scaffold_120 . exon 92919 93237 . - . ID=Physo142713.3;Parent=Physo142713;constitutive=1;ensembl_phase=2;rank=3 scaffold_120 . CDS 93308 93466 . - 0 ID=Physo142713;Parent=Physo142713;rank=2 scaffold_120 . exon 93308 93466 . - . ID=Physo142713.2;Parent=Physo142713;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_120 . CDS 93558 93643 . - 0 ID=Physo142713;Parent=Physo142713;rank=1 scaffold_120 . exon 93558 93643 . - . ID=Physo142713.1;Parent=Physo142713;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 ensembl protein_coding_gene 97058 98131 . + . ID=Physo142714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200024;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 97058 98131 . + . ID=Physo142714;Parent=Physo142714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 97058 98131 . + 0 ID=Physo142714;Parent=Physo142714;rank=1 scaffold_120 . exon 97058 98131 . + . ID=Physo142714.1;Parent=Physo142714;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 98423 100605 . + . ID=Physo142715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200025;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 98423 100605 . + . ID=Physo142715;Parent=Physo142715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 98423 100435 . + 0 ID=Physo142715;Parent=Physo142715;rank=1 scaffold_120 . exon 98423 100435 . + . ID=Physo142715.1;Parent=Physo142715;constitutive=1;rank=1 scaffold_120 . CDS 100576 100605 . + 0 ID=Physo142715;Parent=Physo142715;rank=2 scaffold_120 . exon 100576 100605 . + . ID=Physo142715.2;Parent=Physo142715;constitutive=1;rank=2 scaffold_120 ensembl protein_coding_gene 106076 107011 . - . ID=Physo142716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200026;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 106076 107011 . - . ID=Physo142716;Parent=Physo142716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 106076 107011 . - 0 ID=Physo142716;Parent=Physo142716;rank=1 scaffold_120 . exon 106076 107011 . - . ID=Physo142716.1;Parent=Physo142716;constitutive=1;rank=1 scaffold_120 . repeat_region 110403 110464 . ? . description=trf scaffold_120 . repeat_region 112549 112568 . ? . description=trf scaffold_120 . repeat_region 112551 112608 . ? . description=dust scaffold_120 . repeat_region 113530 113537 . ? . description=dust scaffold_120 ensembl protein_coding_gene 109589 110466 . - . ID=Physo142717;biotype=protein_coding;description=PsAvh24.2 [Source:UniProtKB/TrEMBL%3BAcc:E0W5M3];external_name=estExt_fgenesh1_pg.C_1200027;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 109589 110466 . - . ID=Physo142717;Parent=Physo142717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 109589 110017 . - 0 ID=Physo142717;Parent=Physo142717;rank=2 scaffold_120 . exon 109589 110017 . - . ID=Physo142717.2;Parent=Physo142717;constitutive=1;rank=2 scaffold_120 . CDS 110095 110466 . - 0 ID=Physo142717;Parent=Physo142717;rank=1 scaffold_120 . exon 110095 110466 . - . ID=Physo142717.1;Parent=Physo142717;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 113743 116229 . - . ID=Physo142718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200028;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 113743 116229 . - . ID=Physo142718;Parent=Physo142718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 113743 116229 . - 0 ID=Physo142718;Parent=Physo142718;rank=1 scaffold_120 . exon 113743 116229 . - . ID=Physo142718.1;Parent=Physo142718;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 116514 117479 . + . ID=Physo142719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200029;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 116514 117479 . + . ID=Physo142719;Parent=Physo142719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 116514 117479 . + 0 ID=Physo142719;Parent=Physo142719;rank=1 scaffold_120 . exon 116514 117479 . + . ID=Physo142719.1;Parent=Physo142719;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 117673 119082 . + . ID=Physo142720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200030;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 117673 119082 . + . ID=Physo142720;Parent=Physo142720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 117673 117800 . + 0 ID=Physo142720;Parent=Physo142720;rank=1 scaffold_120 . exon 117673 117800 . + . ID=Physo142720.1;Parent=Physo142720;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 . CDS 117884 118070 . + 0 ID=Physo142720;Parent=Physo142720;rank=2 scaffold_120 . exon 117884 118070 . + . ID=Physo142720.2;Parent=Physo142720;constitutive=1;ensembl_phase=2;rank=2 scaffold_120 . CDS 118136 118905 . + 0 ID=Physo142720;Parent=Physo142720;rank=3 scaffold_120 . exon 118136 118905 . + . ID=Physo142720.3;Parent=Physo142720;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_120 . CDS 118980 119082 . + 0 ID=Physo142720;Parent=Physo142720;rank=4 scaffold_120 . exon 118980 119082 . + . ID=Physo142720.4;Parent=Physo142720;constitutive=1;ensembl_phase=2;rank=4 scaffold_120 ensembl protein_coding_gene 129057 132692 . - . ID=Physo123133;biotype=protein_coding;external_name=estExt_Genewise1.C_1200039;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 129057 132692 . - . ID=Physo123133;Parent=Physo123133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 129057 129213 . - 0 ID=Physo123133;Parent=Physo123133;rank=5 scaffold_120 . exon 129057 129213 . - . ID=Physo123133.5;Parent=Physo123133;constitutive=1;ensembl_phase=2;rank=5 scaffold_120 . CDS 129286 129348 . - 0 ID=Physo123133;Parent=Physo123133;rank=4 scaffold_120 . CDS 129425 129609 . - 0 ID=Physo123133;Parent=Physo123133;rank=3 scaffold_120 . CDS 129677 129737 . - 0 ID=Physo123133;Parent=Physo123133;rank=2 scaffold_120 . CDS 131823 132670 . - 0 ID=Physo123133;Parent=Physo123133;rank=1 scaffold_120 ensembl protein_coding_gene 121044 123251 . - . ID=Physo142721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200031;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 121044 123251 . - . ID=Physo142721;Parent=Physo142721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 121044 121129 . - 0 ID=Physo142721;Parent=Physo142721;rank=5 scaffold_120 . exon 121044 121129 . - . ID=Physo142721.5;Parent=Physo142721;constitutive=1;ensembl_phase=1;rank=5 scaffold_120 . CDS 121192 121248 . - 0 ID=Physo142721;Parent=Physo142721;rank=4 scaffold_120 . exon 121192 121248 . - . ID=Physo142721.4;Parent=Physo142721;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_120 . CDS 121320 121429 . - 0 ID=Physo142721;Parent=Physo142721;rank=3 scaffold_120 . exon 121320 121429 . - . ID=Physo142721.3;Parent=Physo142721;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_120 . CDS 122038 122210 . - 0 ID=Physo142721;Parent=Physo142721;rank=2 scaffold_120 . exon 122038 122210 . - . ID=Physo142721.2;Parent=Physo142721;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_120 . CDS 122412 123251 . - 0 ID=Physo142721;Parent=Physo142721;rank=1 scaffold_120 . exon 122412 123251 . - . ID=Physo142721.1;Parent=Physo142721;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 124662 128210 . + . ID=Physo142722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200032;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 124662 128210 . + . ID=Physo142722;Parent=Physo142722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 124662 124925 . + 0 ID=Physo142722;Parent=Physo142722;rank=1 scaffold_120 . exon 124662 124925 . + . ID=Physo142722.1;Parent=Physo142722;constitutive=1;rank=1 scaffold_120 . CDS 124994 128140 . + 0 ID=Physo142722;Parent=Physo142722;rank=2 scaffold_120 . exon 124994 128140 . + . ID=Physo142722.2;Parent=Physo142722;constitutive=1;rank=2 scaffold_120 . CDS 128169 128210 . + 0 ID=Physo142722;Parent=Physo142722;rank=3 scaffold_120 . exon 128169 128210 . + . ID=Physo142722.3;Parent=Physo142722;constitutive=1;rank=3 scaffold_120 ensembl protein_coding_gene 119601 120981 . + . ID=Physo158615;biotype=protein_coding;external_name=C_scaffold_120000008;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 119601 120981 . + . ID=Physo158615;Parent=Physo158615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 119601 119756 . + 0 ID=Physo158615;Parent=Physo158615;rank=1 scaffold_120 . exon 119601 119756 . + . ID=Physo158615.1;Parent=Physo158615;constitutive=1;rank=1 scaffold_120 . CDS 119831 119892 . + 0 ID=Physo158615;Parent=Physo158615;rank=2 scaffold_120 . exon 119831 119892 . + . ID=Physo158615.2;Parent=Physo158615;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_120 . CDS 119957 120110 . + 0 ID=Physo158615;Parent=Physo158615;rank=3 scaffold_120 . exon 119957 120110 . + . ID=Physo158615.3;Parent=Physo158615;constitutive=1;ensembl_phase=2;rank=3 scaffold_120 . CDS 120172 120230 . + 0 ID=Physo158615;Parent=Physo158615;rank=4 scaffold_120 . exon 120172 120230 . + . ID=Physo158615.4;Parent=Physo158615;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_120 . CDS 120313 120384 . + 0 ID=Physo158615;Parent=Physo158615;rank=5 scaffold_120 . exon 120313 120384 . + . ID=Physo158615.5;Parent=Physo158615;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_120 . CDS 120456 120567 . + 0 ID=Physo158615;Parent=Physo158615;rank=6 scaffold_120 . exon 120456 120567 . + . ID=Physo158615.6;Parent=Physo158615;constitutive=1;ensembl_phase=2;rank=6 scaffold_120 . CDS 120633 120746 . + 0 ID=Physo158615;Parent=Physo158615;rank=7 scaffold_120 . exon 120633 120746 . + . ID=Physo158615.7;Parent=Physo158615;constitutive=1;rank=7 scaffold_120 . CDS 120823 120981 . + 0 ID=Physo158615;Parent=Physo158615;rank=8 scaffold_120 . exon 120823 120981 . + . ID=Physo158615.8;Parent=Physo158615;constitutive=1;rank=8 scaffold_120 ensembl protein_coding_gene 123424 124017 . + . ID=Physo158617;biotype=protein_coding;external_name=C_scaffold_120000010;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 123424 124017 . + . ID=Physo158617;Parent=Physo158617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 123424 123426 . + 0 ID=Physo158617;Parent=Physo158617;rank=1 scaffold_120 . exon 123424 123426 . + . ID=Physo158617.1;Parent=Physo158617;constitutive=1;rank=1 scaffold_120 . CDS 123534 123596 . + 0 ID=Physo158617;Parent=Physo158617;rank=2 scaffold_120 . exon 123534 123596 . + . ID=Physo158617.2;Parent=Physo158617;constitutive=1;rank=2 scaffold_120 . CDS 123681 123710 . + 0 ID=Physo158617;Parent=Physo158617;rank=3 scaffold_120 . exon 123681 123710 . + . ID=Physo158617.3;Parent=Physo158617;constitutive=1;rank=3 scaffold_120 . CDS 123788 123873 . + 0 ID=Physo158617;Parent=Physo158617;rank=4 scaffold_120 . exon 123788 123873 . + . ID=Physo158617.4;Parent=Physo158617;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_120 . CDS 123966 124017 . + 0 ID=Physo158617;Parent=Physo158617;rank=5 scaffold_120 . exon 123966 124017 . + . ID=Physo158617.5;Parent=Physo158617;constitutive=1;ensembl_phase=2;rank=5 scaffold_120 . biological_region 131956 131958 0.999 + . logic_name=eponine scaffold_120 . repeat_region 133056 133075 . ? . description=trf scaffold_120 . repeat_region 138286 138293 . ? . description=dust scaffold_120 . exon 129286 129348 . - . ID=Physo123133.4;Parent=Physo123133;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_120 . exon 129425 129609 . - . ID=Physo123133.3;Parent=Physo123133;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_120 . exon 129677 129737 . - . ID=Physo123133.2;Parent=Physo123133;constitutive=1;ensembl_phase=2;rank=2 scaffold_120 . exon 131823 132692 . - . ID=Physo123133.1;Parent=Physo123133;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_120 ensembl protein_coding_gene 139050 139683 . - . ID=Physo142725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200035;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 139050 139683 . - . ID=Physo142725;Parent=Physo142725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . exon 139050 139242 . - . ID=Physo142725.3;Parent=Physo142725;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_120 . CDS 139121 139242 . - 0 ID=Physo142725;Parent=Physo142725;rank=3 scaffold_120 . CDS 139352 139431 . - 0 ID=Physo142725;Parent=Physo142725;rank=2 scaffold_120 . CDS 139553 139674 . - 0 ID=Physo142725;Parent=Physo142725;rank=1 scaffold_120 ensembl protein_coding_gene 138338 138790 . - . ID=Physo158619;biotype=protein_coding;external_name=C_scaffold_120000012;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 138338 138790 . - . ID=Physo158619;Parent=Physo158619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 138338 138385 . - 0 ID=Physo158619;Parent=Physo158619;rank=2 scaffold_120 . exon 138338 138385 . - . ID=Physo158619.2;Parent=Physo158619;constitutive=1;rank=2 scaffold_120 . CDS 138461 138790 . - 0 ID=Physo158619;Parent=Physo158619;rank=1 scaffold_120 . exon 138461 138790 . - . ID=Physo158619.1;Parent=Physo158619;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 146570 148172 . + . ID=Physo109504;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1200005;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 146570 148172 . + . ID=Physo109504;Parent=Physo109504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 146570 147405 . + 0 ID=Physo109504;Parent=Physo109504;rank=1 scaffold_120 . exon 146570 147405 . + . ID=Physo109504.1;Parent=Physo109504;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_120 . CDS 147473 147533 . + 0 ID=Physo109504;Parent=Physo109504;rank=2 scaffold_120 . exon 147473 147533 . + . ID=Physo109504.2;Parent=Physo109504;constitutive=1;ensembl_phase=2;rank=2 scaffold_120 . CDS 147604 147788 . + 0 ID=Physo109504;Parent=Physo109504;rank=3 scaffold_120 . exon 147604 147788 . + . ID=Physo109504.3;Parent=Physo109504;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_120 . CDS 147862 147924 . + 0 ID=Physo109504;Parent=Physo109504;rank=4 scaffold_120 . exon 147862 147924 . + . ID=Physo109504.4;Parent=Physo109504;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_120 . CDS 147995 148172 . + 0 ID=Physo109504;Parent=Physo109504;rank=5 scaffold_120 . exon 147995 148172 . + . ID=Physo109504.5;Parent=Physo109504;constitutive=1;ensembl_phase=2;rank=5 scaffold_120 . exon 139352 139431 . - . ID=Physo142725.2;Parent=Physo142725;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_120 . exon 139553 139683 . - . ID=Physo142725.1;Parent=Physo142725;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_120 ensembl protein_coding_gene 139848 142347 . + . ID=Physo142726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200036;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 139848 142347 . + . ID=Physo142726;Parent=Physo142726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . exon 139848 142347 . + . ID=Physo142726.1;Parent=Physo142726;constitutive=1;ensembl_phase=-1;rank=1 scaffold_120 . CDS 139906 142347 . + 0 ID=Physo142726;Parent=Physo142726;rank=1 scaffold_120 ensembl protein_coding_gene 143955 146330 . + . ID=Physo142727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200037;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 143955 146330 . + . ID=Physo142727;Parent=Physo142727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 143955 146330 . + 0 ID=Physo142727;Parent=Physo142727;rank=1 scaffold_120 . exon 143955 146330 . + . ID=Physo142727.1;Parent=Physo142727;constitutive=1;rank=1 scaffold_120 . repeat_region 150824 150831 . ? . description=dust scaffold_120 . repeat_region 154507 154514 . ? . description=dust scaffold_120 . biological_region 156809 156810 0.999 + . logic_name=eponine scaffold_120 ensembl protein_coding_gene 150975 152912 . - . ID=Physo142729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200039;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 150975 152912 . - . ID=Physo142729;Parent=Physo142729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 150975 151747 . - 0 ID=Physo142729;Parent=Physo142729;rank=3 scaffold_120 . exon 150975 151747 . - . ID=Physo142729.3;Parent=Physo142729;constitutive=1;ensembl_phase=1;rank=3 scaffold_120 . CDS 151819 151912 . - 0 ID=Physo142729;Parent=Physo142729;rank=2 scaffold_120 . exon 151819 151912 . - . ID=Physo142729.2;Parent=Physo142729;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_120 . CDS 152229 152912 . - 0 ID=Physo142729;Parent=Physo142729;rank=1 scaffold_120 . exon 152229 152912 . - . ID=Physo142729.1;Parent=Physo142729;constitutive=1;rank=1 scaffold_120 ensembl protein_coding_gene 156132 156943 . - . ID=Physo142730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200040;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 156132 156943 . - . ID=Physo142730;Parent=Physo142730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 156132 156446 . - 0 ID=Physo142730;Parent=Physo142730;rank=2 scaffold_120 . exon 156132 156446 . - . ID=Physo142730.2;Parent=Physo142730;constitutive=1;rank=2 scaffold_120 . CDS 156521 156943 . - 0 ID=Physo142730;Parent=Physo142730;rank=1 scaffold_120 . exon 156521 156943 . - . ID=Physo142730.1;Parent=Physo142730;constitutive=1;rank=1 scaffold_120 . repeat_region 164778 164850 . ? . description=trf scaffold_120 ensembl protein_coding_gene 162761 163697 . + . ID=Physo142731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200041;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 162761 163697 . + . ID=Physo142731;Parent=Physo142731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 162761 162781 . + 0 ID=Physo142731;Parent=Physo142731;rank=1 scaffold_120 . exon 162761 162781 . + . ID=Physo142731.1;Parent=Physo142731;constitutive=1;rank=1 scaffold_120 . CDS 162820 163542 . + 0 ID=Physo142731;Parent=Physo142731;rank=2 scaffold_120 . exon 162820 163542 . + . ID=Physo142731.2;Parent=Physo142731;constitutive=1;rank=2 scaffold_120 . CDS 163611 163697 . + 0 ID=Physo142731;Parent=Physo142731;rank=3 scaffold_120 . exon 163611 163697 . + . ID=Physo142731.3;Parent=Physo142731;constitutive=1;rank=3 scaffold_120 ensembl protein_coding_gene 167789 168712 . + . ID=Physo142732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200042;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 167789 168712 . + . ID=Physo142732;Parent=Physo142732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 167789 168712 . + 0 ID=Physo142732;Parent=Physo142732;rank=1 scaffold_120 . exon 167789 168712 . + . ID=Physo142732.1;Parent=Physo142732;constitutive=1;rank=1 scaffold_120 . repeat_region 170102 181725 . ? . description=dust scaffold_120 . repeat_region 181930 182057 . ? . description=trf scaffold_120 . biological_region 182494 182496 0.999 - . logic_name=eponine scaffold_120 . biological_region 182526 182528 0.999 - . logic_name=eponine scaffold_120 . repeat_region 182639 182684 . ? . description=trf scaffold_120 . biological_region 187717 187720 0.999 + . logic_name=eponine scaffold_120 ensembl protein_coding_gene 186491 187570 . - . ID=Physo142733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1200043;logic_name=jgi_physo1_1 scaffold_120 ensembl transcript 186491 187570 . - . ID=Physo142733;Parent=Physo142733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_120 . CDS 186491 186548 . - 0 ID=Physo142733;Parent=Physo142733;rank=2 scaffold_120 . exon 186491 186548 . - . ID=Physo142733.2;Parent=Physo142733;constitutive=1;ensembl_phase=2;rank=2 scaffold_120 . CDS 186651 187570 . - 0 ID=Physo142733;Parent=Physo142733;rank=1 scaffold_120 . exon 186651 187570 . - . ID=Physo142733.1;Parent=Physo142733;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_124 1 189187 scaffold_124 . biological_region 301 304 0.999 + . logic_name=eponine scaffold_124 . biological_region 345 347 0.999 - . logic_name=eponine scaffold_124 . biological_region 971 979 0.999 + . logic_name=eponine scaffold_124 . biological_region 1079 1082 0.999 - . logic_name=eponine scaffold_124 . repeat_region 1703 1730 . ? . description=trf scaffold_124 . repeat_region 1703 1730 . ? . description=dust scaffold_124 . repeat_region 1763 1779 . ? . description=dust scaffold_124 . biological_region 1944 1947 0.999 - . logic_name=eponine scaffold_124 . repeat_region 2178 2186 . ? . description=dust scaffold_124 . repeat_region 2213 2262 . ? . description=dust scaffold_124 . biological_region 3046 3049 0.999 + . logic_name=eponine scaffold_124 . repeat_region 3212 3229 . ? . description=dust scaffold_124 . repeat_region 3262 3293 . ? . description=trf scaffold_124 . repeat_region 3262 3293 . ? . description=dust scaffold_124 . biological_region 3915 3918 0.999 + . logic_name=eponine scaffold_124 . biological_region 4018 4026 0.999 - . logic_name=eponine scaffold_124 . biological_region 4650 4652 0.999 + . logic_name=eponine scaffold_124 . biological_region 4693 4696 0.999 - . logic_name=eponine scaffold_124 . repeat_region 5031 5064 . ? . description=trf scaffold_124 . repeat_region 5711 5718 . ? . description=dust scaffold_124 . biological_region 6964 6967 0.999 - . logic_name=eponine scaffold_124 . repeat_region 7411 7423 . ? . description=dust scaffold_124 . repeat_region 9047 27027 . ? . description=dust scaffold_124 ensembl protein_coding_gene 657 1696 . - . ID=Physo142881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240001;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 657 1696 . - . ID=Physo142881;Parent=Physo142881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 657 1503 . - 0 ID=Physo142881;Parent=Physo142881;rank=2 scaffold_124 . exon 657 1503 . - . ID=Physo142881.2;Parent=Physo142881;constitutive=1;ensembl_phase=2;rank=2 scaffold_124 . CDS 1575 1696 . - 0 ID=Physo142881;Parent=Physo142881;rank=1 scaffold_124 . exon 1575 1696 . - . ID=Physo142881.1;Parent=Physo142881;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 ensembl protein_coding_gene 3300 4339 . + . ID=Physo142882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240002;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 3300 4339 . + . ID=Physo142882;Parent=Physo142882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 3300 3421 . + 0 ID=Physo142882;Parent=Physo142882;rank=1 scaffold_124 . exon 3300 3421 . + . ID=Physo142882.1;Parent=Physo142882;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 . CDS 3493 4339 . + 0 ID=Physo142882;Parent=Physo142882;rank=2 scaffold_124 . exon 3493 4339 . + . ID=Physo142882.2;Parent=Physo142882;constitutive=1;ensembl_phase=2;rank=2 scaffold_124 ensembl protein_coding_gene 8070 8844 . + . ID=Physo142883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240003;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 8070 8844 . + . ID=Physo142883;Parent=Physo142883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 8070 8781 . + 0 ID=Physo142883;Parent=Physo142883;rank=1 scaffold_124 . exon 8070 8781 . + . ID=Physo142883.1;Parent=Physo142883;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 . CDS 8825 8844 . + 0 ID=Physo142883;Parent=Physo142883;rank=2 scaffold_124 . exon 8825 8844 . + . ID=Physo142883.2;Parent=Physo142883;constitutive=1;ensembl_phase=1;rank=2 scaffold_124 . repeat_region 9047 27027 . ? . description=dust scaffold_124 . repeat_region 27028 30421 . ? . description=dust scaffold_124 . biological_region 32541 32543 0.999 - . logic_name=eponine scaffold_124 . biological_region 36583 36588 0.999 - . logic_name=eponine scaffold_124 . biological_region 38796 38803 0.999 - . logic_name=eponine scaffold_124 . biological_region 38882 38884 0.999 + . logic_name=eponine scaffold_124 ensembl protein_coding_gene 31839 34295 . + . ID=Physo142884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240004;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 31839 34295 . + . ID=Physo142884;Parent=Physo142884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 31839 31930 . + 0 ID=Physo142884;Parent=Physo142884;rank=1 scaffold_124 . exon 31839 31930 . + . ID=Physo142884.1;Parent=Physo142884;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 . CDS 32006 34295 . + 0 ID=Physo142884;Parent=Physo142884;rank=2 scaffold_124 . exon 32006 34295 . + . ID=Physo142884.2;Parent=Physo142884;constitutive=1;ensembl_phase=2;rank=2 scaffold_124 ensembl protein_coding_gene 34444 39053 . - . ID=Physo158661;biotype=protein_coding;external_name=C_scaffold_124000001;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 34444 39053 . - . ID=Physo158661;Parent=Physo158661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 34444 34853 . - 0 ID=Physo158661;Parent=Physo158661;rank=12 scaffold_124 . exon 34444 34853 . - . ID=Physo158661.12;Parent=Physo158661;constitutive=1;ensembl_phase=1;rank=12 scaffold_124 . CDS 34877 34904 . - 0 ID=Physo158661;Parent=Physo158661;rank=11 scaffold_124 . exon 34877 34904 . - . ID=Physo158661.11;Parent=Physo158661;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_124 . CDS 35047 35362 . - 0 ID=Physo158661;Parent=Physo158661;rank=10 scaffold_124 . exon 35047 35362 . - . ID=Physo158661.10;Parent=Physo158661;constitutive=1;ensembl_phase=2;rank=10 scaffold_124 . CDS 35867 36072 . - 0 ID=Physo158661;Parent=Physo158661;rank=9 scaffold_124 . exon 35867 36072 . - . ID=Physo158661.9;Parent=Physo158661;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_124 . CDS 36106 36236 . - 0 ID=Physo158661;Parent=Physo158661;rank=8 scaffold_124 . exon 36106 36236 . - . ID=Physo158661.8;Parent=Physo158661;constitutive=1;ensembl_phase=1;rank=8 scaffold_124 . CDS 36435 36661 . - 0 ID=Physo158661;Parent=Physo158661;rank=7 scaffold_124 . exon 36435 36661 . - . ID=Physo158661.7;Parent=Physo158661;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_124 . CDS 37118 37200 . - 0 ID=Physo158661;Parent=Physo158661;rank=6 scaffold_124 . exon 37118 37200 . - . ID=Physo158661.6;Parent=Physo158661;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_124 . CDS 37279 37369 . - 0 ID=Physo158661;Parent=Physo158661;rank=5 scaffold_124 . exon 37279 37369 . - . ID=Physo158661.5;Parent=Physo158661;constitutive=1;ensembl_phase=2;rank=5 scaffold_124 . CDS 37444 38159 . - 0 ID=Physo158661;Parent=Physo158661;rank=4 scaffold_124 . exon 37444 38159 . - . ID=Physo158661.4;Parent=Physo158661;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_124 . CDS 38258 38499 . - 0 ID=Physo158661;Parent=Physo158661;rank=3 scaffold_124 . exon 38258 38499 . - . ID=Physo158661.3;Parent=Physo158661;constitutive=1;ensembl_phase=1;rank=3 scaffold_124 . CDS 38585 38744 . - 0 ID=Physo158661;Parent=Physo158661;rank=2 scaffold_124 . exon 38585 38744 . - . ID=Physo158661.2;Parent=Physo158661;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_124 . CDS 38835 39053 . - 0 ID=Physo158661;Parent=Physo158661;rank=1 scaffold_124 . exon 38835 39053 . - . ID=Physo158661.1;Parent=Physo158661;constitutive=1;rank=1 scaffold_124 . repeat_region 39979 39987 . ? . description=dust scaffold_124 . repeat_region 46788 46817 . ? . description=trf scaffold_124 ensembl protein_coding_gene 45101 46523 . + . ID=Physo109515;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1240001;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 45101 46523 . + . ID=Physo109515;Parent=Physo109515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . exon 45101 45107 . + . ID=Physo109515.1;Parent=Physo109515;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_124 . exon 45442 46523 . + . ID=Physo109515.2;Parent=Physo109515;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_124 . CDS 45488 46441 . + 0 ID=Physo109515;Parent=Physo109515;rank=1 scaffold_124 ensembl protein_coding_gene 46740 48143 . - . ID=Physo109516;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1240002;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 46740 48143 . - . ID=Physo109516;Parent=Physo109516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 46740 48143 . - 0 ID=Physo109516;Parent=Physo109516;rank=1 scaffold_124 . exon 46740 48143 . - . ID=Physo109516.1;Parent=Physo109516;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 43685 45128 . - . ID=Physo123290;biotype=protein_coding;external_name=estExt_Genewise1.C_1240011;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 43685 45128 . - . ID=Physo123290;Parent=Physo123290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 43685 45064 . - 0 ID=Physo123290;Parent=Physo123290;rank=1 scaffold_124 . exon 43685 45128 . - . ID=Physo123290.1;Parent=Physo123290;constitutive=1;ensembl_phase=-1;rank=1 scaffold_124 ensembl protein_coding_gene 48308 49777 . + . ID=Physo158662;biotype=protein_coding;external_name=C_scaffold_124000002;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 48308 49777 . + . ID=Physo158662;Parent=Physo158662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 48308 48444 . + 0 ID=Physo158662;Parent=Physo158662;rank=1 scaffold_124 . exon 48308 48444 . + . ID=Physo158662.1;Parent=Physo158662;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 . CDS 48518 48723 . + 0 ID=Physo158662;Parent=Physo158662;rank=2 scaffold_124 . exon 48518 48723 . + . ID=Physo158662.2;Parent=Physo158662;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_124 . CDS 48798 48841 . + 0 ID=Physo158662;Parent=Physo158662;rank=3 scaffold_124 . exon 48798 48841 . + . ID=Physo158662.3;Parent=Physo158662;constitutive=1;ensembl_phase=1;rank=3 scaffold_124 . CDS 48915 49006 . + 0 ID=Physo158662;Parent=Physo158662;rank=4 scaffold_124 . exon 48915 49006 . + . ID=Physo158662.4;Parent=Physo158662;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_124 . CDS 49080 49291 . + 0 ID=Physo158662;Parent=Physo158662;rank=5 scaffold_124 . exon 49080 49291 . + . ID=Physo158662.5;Parent=Physo158662;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_124 . CDS 49355 49451 . + 0 ID=Physo158662;Parent=Physo158662;rank=6 scaffold_124 . exon 49355 49451 . + . ID=Physo158662.6;Parent=Physo158662;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_124 . CDS 49519 49777 . + 0 ID=Physo158662;Parent=Physo158662;rank=7 scaffold_124 . exon 49519 49777 . + . ID=Physo158662.7;Parent=Physo158662;constitutive=1;ensembl_phase=2;rank=7 scaffold_124 . biological_region 51370 51373 0.999 + . logic_name=eponine scaffold_124 . biological_region 52439 52440 0.999 + . logic_name=eponine scaffold_124 . biological_region 58687 58689 0.999 + . logic_name=eponine scaffold_124 . biological_region 59367 59369 0.999 + . logic_name=eponine scaffold_124 ensembl protein_coding_gene 56162 58845 . - . ID=Physo142893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240013;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 56162 58845 . - . ID=Physo142893;Parent=Physo142893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . exon 56162 56211 . - . ID=Physo142893.7;Parent=Physo142893;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_124 . CDS 56164 56211 . - 0 ID=Physo142893;Parent=Physo142893;rank=7 scaffold_124 . CDS 56281 56373 . - 0 ID=Physo142893;Parent=Physo142893;rank=6 scaffold_124 . exon 56281 56373 . - . ID=Physo142893.6;Parent=Physo142893;constitutive=1;rank=6 scaffold_124 . CDS 56437 56544 . - 0 ID=Physo142893;Parent=Physo142893;rank=5 scaffold_124 . exon 56437 56544 . - . ID=Physo142893.5;Parent=Physo142893;constitutive=1;rank=5 scaffold_124 . CDS 56686 57667 . - 0 ID=Physo142893;Parent=Physo142893;rank=4 scaffold_124 . exon 56686 57667 . - . ID=Physo142893.4;Parent=Physo142893;constitutive=1;ensembl_phase=2;rank=4 scaffold_124 . CDS 57743 58015 . - 0 ID=Physo142893;Parent=Physo142893;rank=3 scaffold_124 . exon 57743 58015 . - . ID=Physo142893.3;Parent=Physo142893;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_124 . CDS 58035 58109 . - 0 ID=Physo142893;Parent=Physo142893;rank=2 scaffold_124 . exon 58035 58109 . - . ID=Physo142893.2;Parent=Physo142893;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_124 . CDS 58250 58845 . - 0 ID=Physo142893;Parent=Physo142893;rank=1 scaffold_124 . exon 58250 58845 . - . ID=Physo142893.1;Parent=Physo142893;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 ensembl protein_coding_gene 50036 51778 . - . ID=Physo158663;biotype=protein_coding;external_name=C_scaffold_124000003;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 50036 51778 . - . ID=Physo158663;Parent=Physo158663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 50036 50200 . - 0 ID=Physo158663;Parent=Physo158663;rank=5 scaffold_124 . exon 50036 50200 . - . ID=Physo158663.5;Parent=Physo158663;constitutive=1;rank=5 scaffold_124 . CDS 50250 50446 . - 0 ID=Physo158663;Parent=Physo158663;rank=4 scaffold_124 . exon 50250 50446 . - . ID=Physo158663.4;Parent=Physo158663;constitutive=1;ensembl_phase=1;rank=4 scaffold_124 . CDS 50867 51386 . - 0 ID=Physo158663;Parent=Physo158663;rank=3 scaffold_124 . exon 50867 51386 . - . ID=Physo158663.3;Parent=Physo158663;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_124 . CDS 51426 51689 . - 0 ID=Physo158663;Parent=Physo158663;rank=2 scaffold_124 . exon 51426 51689 . - . ID=Physo158663.2;Parent=Physo158663;constitutive=1;rank=2 scaffold_124 . CDS 51773 51778 . - 0 ID=Physo158663;Parent=Physo158663;rank=1 scaffold_124 . exon 51773 51778 . - . ID=Physo158663.1;Parent=Physo158663;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 52831 55751 . + . ID=Physo158664;biotype=protein_coding;external_name=C_scaffold_124000004;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 52831 55751 . + . ID=Physo158664;Parent=Physo158664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 52831 52919 . + 0 ID=Physo158664;Parent=Physo158664;rank=1 scaffold_124 . exon 52831 52919 . + . ID=Physo158664.1;Parent=Physo158664;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 . CDS 53357 53494 . + 0 ID=Physo158664;Parent=Physo158664;rank=2 scaffold_124 . exon 53357 53494 . + . ID=Physo158664.2;Parent=Physo158664;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_124 . CDS 53636 53685 . + 0 ID=Physo158664;Parent=Physo158664;rank=3 scaffold_124 . exon 53636 53685 . + . ID=Physo158664.3;Parent=Physo158664;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_124 . CDS 54018 54037 . + 0 ID=Physo158664;Parent=Physo158664;rank=4 scaffold_124 . exon 54018 54037 . + . ID=Physo158664.4;Parent=Physo158664;constitutive=1;ensembl_phase=1;rank=4 scaffold_124 . CDS 54057 54186 . + 0 ID=Physo158664;Parent=Physo158664;rank=5 scaffold_124 . exon 54057 54186 . + . ID=Physo158664.5;Parent=Physo158664;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_124 . CDS 54517 54666 . + 0 ID=Physo158664;Parent=Physo158664;rank=6 scaffold_124 . exon 54517 54666 . + . ID=Physo158664.6;Parent=Physo158664;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_124 . CDS 54790 54933 . + 0 ID=Physo158664;Parent=Physo158664;rank=7 scaffold_124 . exon 54790 54933 . + . ID=Physo158664.7;Parent=Physo158664;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_124 . CDS 55000 55054 . + 0 ID=Physo158664;Parent=Physo158664;rank=8 scaffold_124 . exon 55000 55054 . + . ID=Physo158664.8;Parent=Physo158664;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_124 . CDS 55118 55196 . + 0 ID=Physo158664;Parent=Physo158664;rank=9 scaffold_124 . exon 55118 55196 . + . ID=Physo158664.9;Parent=Physo158664;constitutive=1;ensembl_phase=2;rank=9 scaffold_124 . CDS 55275 55751 . + 0 ID=Physo158664;Parent=Physo158664;rank=10 scaffold_124 . exon 55275 55751 . + . ID=Physo158664.10;Parent=Physo158664;constitutive=1;rank=10 scaffold_124 . repeat_region 61010 61098 . ? . description=trf scaffold_124 . repeat_region 61109 61443 . ? . description=trf scaffold_124 . repeat_region 61142 61194 . ? . description=trf scaffold_124 . repeat_region 61184 61443 . ? . description=trf scaffold_124 . repeat_region 69031 69056 . ? . description=dust scaffold_124 ensembl protein_coding_gene 60536 64488 . + . ID=Physo142894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240014;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 60536 64488 . + . ID=Physo142894;Parent=Physo142894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 60536 62648 . + 0 ID=Physo142894;Parent=Physo142894;rank=1 scaffold_124 . exon 60536 62648 . + . ID=Physo142894.1;Parent=Physo142894;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 . CDS 62699 62763 . + 0 ID=Physo142894;Parent=Physo142894;rank=2 scaffold_124 . exon 62699 62763 . + . ID=Physo142894.2;Parent=Physo142894;constitutive=1;ensembl_phase=1;rank=2 scaffold_124 . CDS 63019 63706 . + 0 ID=Physo142894;Parent=Physo142894;rank=3 scaffold_124 . exon 63019 63706 . + . ID=Physo142894.3;Parent=Physo142894;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_124 . CDS 63938 64488 . + 0 ID=Physo142894;Parent=Physo142894;rank=4 scaffold_124 . exon 63938 64488 . + . ID=Physo142894.4;Parent=Physo142894;constitutive=1;ensembl_phase=1;rank=4 scaffold_124 ensembl protein_coding_gene 66469 68235 . + . ID=Physo142895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240015;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 66469 68235 . + . ID=Physo142895;Parent=Physo142895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 66469 68235 . + 0 ID=Physo142895;Parent=Physo142895;rank=1 scaffold_124 . exon 66469 68235 . + . ID=Physo142895.1;Parent=Physo142895;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 68701 71243 . + . ID=Physo142896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240016;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 68701 71243 . + . ID=Physo142896;Parent=Physo142896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 68701 71145 . + 0 ID=Physo142896;Parent=Physo142896;rank=1 scaffold_124 . exon 68701 71243 . + . ID=Physo142896.1;Parent=Physo142896;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_124 . biological_region 69718 69722 0.999 - . logic_name=eponine scaffold_124 . biological_region 70597 70601 0.999 + . logic_name=eponine scaffold_124 . biological_region 73261 73263 0.999 + . logic_name=eponine scaffold_124 . biological_region 73346 73351 0.999 - . logic_name=eponine scaffold_124 . biological_region 73405 73408 0.999 - . logic_name=eponine scaffold_124 . biological_region 73424 73430 0.999 + . logic_name=eponine scaffold_124 . biological_region 74159 74159 0.999 - . logic_name=eponine scaffold_124 . repeat_region 75131 75353 . + . description=Polinton-1_PI scaffold_124 . biological_region 79588 79588 0.999 - . logic_name=eponine scaffold_124 ensembl protein_coding_gene 71258 74553 . - . ID=Physo142897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240017;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 71258 74553 . - . ID=Physo142897;Parent=Physo142897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 71258 71316 . - 0 ID=Physo142897;Parent=Physo142897;rank=4 scaffold_124 . exon 71258 71316 . - . ID=Physo142897.4;Parent=Physo142897;constitutive=1;ensembl_phase=1;rank=4 scaffold_124 . CDS 71369 73521 . - 0 ID=Physo142897;Parent=Physo142897;rank=3 scaffold_124 . exon 71369 73521 . - . ID=Physo142897.3;Parent=Physo142897;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_124 . CDS 73940 74393 . - 0 ID=Physo142897;Parent=Physo142897;rank=2 scaffold_124 . exon 73940 74393 . - . ID=Physo142897.2;Parent=Physo142897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_124 . CDS 74520 74553 . - 0 ID=Physo142897;Parent=Physo142897;rank=1 scaffold_124 . exon 74520 74553 . - . ID=Physo142897.1;Parent=Physo142897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 ensembl protein_coding_gene 79263 79862 . - . ID=Physo142898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240018;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 79263 79862 . - . ID=Physo142898;Parent=Physo142898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 79263 79862 . - 0 ID=Physo142898;Parent=Physo142898;rank=1 scaffold_124 . exon 79263 79862 . - . ID=Physo142898.1;Parent=Physo142898;constitutive=1;rank=1 scaffold_124 . repeat_region 85075 85084 . ? . description=dust scaffold_124 . repeat_region 87240 87252 . ? . description=dust scaffold_124 . repeat_region 87676 87683 . ? . description=dust scaffold_124 . repeat_region 87731 87749 . ? . description=dust scaffold_124 . repeat_region 88632 88639 . ? . description=dust scaffold_124 ensembl protein_coding_gene 85121 86503 . - . ID=Physo142899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240019;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 85121 86503 . - . ID=Physo142899;Parent=Physo142899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 85121 86503 . - 0 ID=Physo142899;Parent=Physo142899;rank=1 scaffold_124 . exon 85121 86503 . - . ID=Physo142899.1;Parent=Physo142899;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 87044 88357 . + . ID=Physo142900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240020;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 87044 88357 . + . ID=Physo142900;Parent=Physo142900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . exon 87044 87203 . + . ID=Physo142900.1;Parent=Physo142900;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_124 . CDS 87055 87203 . + 0 ID=Physo142900;Parent=Physo142900;rank=1 scaffold_124 . CDS 87329 87404 . + 0 ID=Physo142900;Parent=Physo142900;rank=2 scaffold_124 . exon 87329 87404 . + . ID=Physo142900.2;Parent=Physo142900;constitutive=1;ensembl_phase=2;rank=2 scaffold_124 . CDS 87475 87667 . + 0 ID=Physo142900;Parent=Physo142900;rank=3 scaffold_124 . exon 87475 87667 . + . ID=Physo142900.3;Parent=Physo142900;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_124 . CDS 87759 87822 . + 0 ID=Physo142900;Parent=Physo142900;rank=4 scaffold_124 . exon 87759 87822 . + . ID=Physo142900.4;Parent=Physo142900;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_124 . CDS 87894 87991 . + 0 ID=Physo142900;Parent=Physo142900;rank=5 scaffold_124 . exon 87894 87991 . + . ID=Physo142900.5;Parent=Physo142900;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_124 . CDS 88080 88357 . + 0 ID=Physo142900;Parent=Physo142900;rank=6 scaffold_124 . exon 88080 88357 . + . ID=Physo142900.6;Parent=Physo142900;constitutive=1;ensembl_phase=1;rank=6 scaffold_124 ensembl protein_coding_gene 88624 89255 . + . ID=Physo142901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240021;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 88624 89255 . + . ID=Physo142901;Parent=Physo142901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . exon 88624 88681 . + . ID=Physo142901.1;Parent=Physo142901;constitutive=1;ensembl_phase=-1;rank=1 scaffold_124 . CDS 88655 88681 . + 0 ID=Physo142901;Parent=Physo142901;rank=1 scaffold_124 . CDS 88751 89128 . + 0 ID=Physo142901;Parent=Physo142901;rank=2 scaffold_124 . exon 88751 89255 . + . ID=Physo142901.2;Parent=Physo142901;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_124 . biological_region 90453 90454 0.999 - . logic_name=eponine scaffold_124 . biological_region 91286 91289 0.999 - . logic_name=eponine scaffold_124 . repeat_region 91914 91941 . ? . description=trf scaffold_124 . repeat_region 91914 91941 . ? . description=trf scaffold_124 . biological_region 92809 92812 0.999 - . logic_name=eponine scaffold_124 . biological_region 94098 94099 0.999 - . logic_name=eponine scaffold_124 . repeat_region 95858 95884 . ? . description=trf scaffold_124 . biological_region 96062 96064 0.999 - . logic_name=eponine scaffold_124 . biological_region 97231 97237 0.999 + . logic_name=eponine scaffold_124 . biological_region 97363 97367 0.999 - . logic_name=eponine scaffold_124 . biological_region 98588 98591 0.999 - . logic_name=eponine scaffold_124 . biological_region 98965 98968 0.999 - . logic_name=eponine scaffold_124 . biological_region 99367 99369 0.999 + . logic_name=eponine scaffold_124 ensembl protein_coding_gene 90826 93402 . + . ID=Physo142902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240022;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 90826 93402 . + . ID=Physo142902;Parent=Physo142902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 90826 93402 . + 0 ID=Physo142902;Parent=Physo142902;rank=1 scaffold_124 . exon 90826 93402 . + . ID=Physo142902.1;Parent=Physo142902;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 93465 96117 . - . ID=Physo142903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240023;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 93465 96117 . - . ID=Physo142903;Parent=Physo142903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . exon 93465 96117 . - . ID=Physo142903.1;Parent=Physo142903;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_124 . CDS 93571 96096 . - 0 ID=Physo142903;Parent=Physo142903;rank=1 scaffold_124 ensembl protein_coding_gene 97186 98294 . + . ID=Physo142904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240024;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 97186 98294 . + . ID=Physo142904;Parent=Physo142904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 97186 98081 . + 0 ID=Physo142904;Parent=Physo142904;rank=1 scaffold_124 . exon 97186 98081 . + . ID=Physo142904.1;Parent=Physo142904;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_124 . CDS 98159 98294 . + 0 ID=Physo142904;Parent=Physo142904;rank=2 scaffold_124 . exon 98159 98294 . + . ID=Physo142904.2;Parent=Physo142904;constitutive=1;ensembl_phase=2;rank=2 scaffold_124 ensembl protein_coding_gene 98744 100262 . - . ID=Physo142905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240025;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 98744 100262 . - . ID=Physo142905;Parent=Physo142905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 98744 100216 . - 0 ID=Physo142905;Parent=Physo142905;rank=1 scaffold_124 . exon 98744 100262 . - . ID=Physo142905.1;Parent=Physo142905;constitutive=1;ensembl_phase=-1;rank=1 scaffold_124 ensembl protein_coding_gene 106902 107716 . + . ID=Physo109517;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1240003;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 106902 107716 . + . ID=Physo109517;Parent=Physo109517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 106902 107639 . + 0 ID=Physo109517;Parent=Physo109517;rank=1 scaffold_124 . exon 106902 107716 . + . ID=Physo109517.1;Parent=Physo109517;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_124 ensembl protein_coding_gene 109356 110497 . + . ID=Physo109518;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1240004;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 109356 110497 . + . ID=Physo109518;Parent=Physo109518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 109356 109443 . + 0 ID=Physo109518;Parent=Physo109518;rank=1 scaffold_124 . exon 109356 109443 . + . ID=Physo109518.1;Parent=Physo109518;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 . CDS 109590 110329 . + 0 ID=Physo109518;Parent=Physo109518;rank=2 scaffold_124 ensembl protein_coding_gene 100538 102944 . + . ID=Physo142906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240026;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 100538 102944 . + . ID=Physo142906;Parent=Physo142906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 100538 100994 . + 0 ID=Physo142906;Parent=Physo142906;rank=1 scaffold_124 . exon 100538 100994 . + . ID=Physo142906.1;Parent=Physo142906;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 . CDS 101063 101339 . + 0 ID=Physo142906;Parent=Physo142906;rank=2 scaffold_124 . exon 101063 101339 . + . ID=Physo142906.2;Parent=Physo142906;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_124 . CDS 101408 101719 . + 0 ID=Physo142906;Parent=Physo142906;rank=3 scaffold_124 . exon 101408 101719 . + . ID=Physo142906.3;Parent=Physo142906;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_124 . CDS 101781 101849 . + 0 ID=Physo142906;Parent=Physo142906;rank=4 scaffold_124 . exon 101781 101849 . + . ID=Physo142906.4;Parent=Physo142906;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_124 . CDS 101936 101961 . + 0 ID=Physo142906;Parent=Physo142906;rank=5 scaffold_124 . exon 101936 101961 . + . ID=Physo142906.5;Parent=Physo142906;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_124 . CDS 102036 102179 . + 0 ID=Physo142906;Parent=Physo142906;rank=6 scaffold_124 . exon 102036 102179 . + . ID=Physo142906.6;Parent=Physo142906;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_124 . CDS 102256 102440 . + 0 ID=Physo142906;Parent=Physo142906;rank=7 scaffold_124 . exon 102256 102440 . + . ID=Physo142906.7;Parent=Physo142906;constitutive=1;ensembl_phase=1;rank=7 scaffold_124 . CDS 102500 102601 . + 0 ID=Physo142906;Parent=Physo142906;rank=8 scaffold_124 . exon 102500 102601 . + . ID=Physo142906.8;Parent=Physo142906;constitutive=1;rank=8 scaffold_124 . CDS 102669 102944 . + 0 ID=Physo142906;Parent=Physo142906;rank=9 scaffold_124 . exon 102669 102944 . + . ID=Physo142906.9;Parent=Physo142906;constitutive=1;rank=9 scaffold_124 ensembl protein_coding_gene 103412 106297 . + . ID=Physo142907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240027;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 103412 106297 . + . ID=Physo142907;Parent=Physo142907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 103412 103451 . + 0 ID=Physo142907;Parent=Physo142907;rank=1 scaffold_124 . exon 103412 103451 . + . ID=Physo142907.1;Parent=Physo142907;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 . CDS 103691 104279 . + 0 ID=Physo142907;Parent=Physo142907;rank=2 scaffold_124 . exon 103691 104279 . + . ID=Physo142907.2;Parent=Physo142907;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_124 . CDS 104359 104407 . + 0 ID=Physo142907;Parent=Physo142907;rank=3 scaffold_124 . exon 104359 104407 . + . ID=Physo142907.3;Parent=Physo142907;constitutive=1;ensembl_phase=2;rank=3 scaffold_124 . CDS 104468 104726 . + 0 ID=Physo142907;Parent=Physo142907;rank=4 scaffold_124 . exon 104468 104726 . + . ID=Physo142907.4;Parent=Physo142907;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_124 . CDS 104925 106297 . + 0 ID=Physo142907;Parent=Physo142907;rank=5 scaffold_124 . exon 104925 106297 . + . ID=Physo142907.5;Parent=Physo142907;constitutive=1;ensembl_phase=1;rank=5 scaffold_124 ensembl protein_coding_gene 107869 109141 . - . ID=Physo142909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240029;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 107869 109141 . - . ID=Physo142909;Parent=Physo142909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . exon 107869 108076 . - . ID=Physo142909.2;Parent=Physo142909;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_124 . CDS 107979 108076 . - 0 ID=Physo142909;Parent=Physo142909;rank=2 scaffold_124 . CDS 108163 109141 . - 0 ID=Physo142909;Parent=Physo142909;rank=1 scaffold_124 . exon 108163 109141 . - . ID=Physo142909.1;Parent=Physo142909;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 . biological_region 110149 110151 0.999 + . logic_name=eponine scaffold_124 . biological_region 110162 110166 0.999 + . logic_name=eponine scaffold_124 . biological_region 110194 110199 0.999 - . logic_name=eponine scaffold_124 . biological_region 110911 110912 0.999 + . logic_name=eponine scaffold_124 . biological_region 110928 110932 0.999 + . logic_name=eponine scaffold_124 . biological_region 110976 110978 0.999 + . logic_name=eponine scaffold_124 . biological_region 111061 111064 0.999 - . logic_name=eponine scaffold_124 . repeat_region 114144 114151 . ? . description=dust scaffold_124 . biological_region 114752 114756 0.999 - . logic_name=eponine scaffold_124 . exon 109590 110497 . + . ID=Physo109518.2;Parent=Physo109518;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_124 ensembl protein_coding_gene 110677 111905 . + . ID=Physo142911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240031;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 110677 111905 . + . ID=Physo142911;Parent=Physo142911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 110677 111811 . + 0 ID=Physo142911;Parent=Physo142911;rank=1 scaffold_124 . exon 110677 111811 . + . ID=Physo142911.1;Parent=Physo142911;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 . CDS 111898 111905 . + 0 ID=Physo142911;Parent=Physo142911;rank=2 scaffold_124 . exon 111898 111905 . + . ID=Physo142911.2;Parent=Physo142911;constitutive=1;ensembl_phase=1;rank=2 scaffold_124 ensembl protein_coding_gene 117842 121393 . + . ID=Physo158670;biotype=protein_coding;external_name=C_scaffold_124000010;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 117842 121393 . + . ID=Physo158670;Parent=Physo158670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 117842 117995 . + 0 ID=Physo158670;Parent=Physo158670;rank=1 scaffold_124 . exon 117842 117995 . + . ID=Physo158670.1;Parent=Physo158670;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 . CDS 118026 118058 . + 0 ID=Physo158670;Parent=Physo158670;rank=2 scaffold_124 . exon 118026 118058 . + . ID=Physo158670.2;Parent=Physo158670;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_124 . CDS 118731 118843 . + 0 ID=Physo158670;Parent=Physo158670;rank=3 scaffold_124 . exon 118731 118843 . + . ID=Physo158670.3;Parent=Physo158670;constitutive=1;ensembl_phase=1;rank=3 scaffold_124 . CDS 118985 119326 . + 0 ID=Physo158670;Parent=Physo158670;rank=4 scaffold_124 . exon 118985 119326 . + . ID=Physo158670.4;Parent=Physo158670;constitutive=1;rank=4 scaffold_124 . CDS 119411 119982 . + 0 ID=Physo158670;Parent=Physo158670;rank=5 scaffold_124 . exon 119411 119982 . + . ID=Physo158670.5;Parent=Physo158670;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_124 . CDS 120079 120211 . + 0 ID=Physo158670;Parent=Physo158670;rank=6 scaffold_124 . CDS 120275 120697 . + 0 ID=Physo158670;Parent=Physo158670;rank=7 scaffold_124 . CDS 120731 121018 . + 0 ID=Physo158670;Parent=Physo158670;rank=8 scaffold_124 . CDS 121067 121393 . + 0 ID=Physo158670;Parent=Physo158670;rank=9 scaffold_124 . repeat_region 123533 123555 . ? . description=trf scaffold_124 . repeat_region 123554 123612 . ? . description=trf scaffold_124 . repeat_region 124031 124055 . ? . description=trf scaffold_124 ensembl protein_coding_gene 121579 123876 . - . ID=Physo142913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240033;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 121579 123876 . - . ID=Physo142913;Parent=Physo142913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 121579 123876 . - 0 ID=Physo142913;Parent=Physo142913;rank=1 scaffold_124 . exon 121579 123876 . - . ID=Physo142913.1;Parent=Physo142913;constitutive=1;rank=1 scaffold_124 . exon 120079 120211 . + . ID=Physo158670.6;Parent=Physo158670;constitutive=1;ensembl_phase=2;rank=6 scaffold_124 . exon 120275 120697 . + . ID=Physo158670.7;Parent=Physo158670;constitutive=1;rank=7 scaffold_124 . exon 120731 121018 . + . ID=Physo158670.8;Parent=Physo158670;constitutive=1;rank=8 scaffold_124 . exon 121067 121393 . + . ID=Physo158670.9;Parent=Physo158670;constitutive=1;rank=9 scaffold_124 . biological_region 131196 131199 0.999 - . logic_name=eponine scaffold_124 . repeat_region 131257 131303 . ? . description=dust scaffold_124 ensembl protein_coding_gene 129855 131384 . - . ID=Physo142914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240034;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 129855 131384 . - . ID=Physo142914;Parent=Physo142914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 129855 131384 . - 0 ID=Physo142914;Parent=Physo142914;rank=1 scaffold_124 . exon 129855 131384 . - . ID=Physo142914.1;Parent=Physo142914;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 136802 137494 . + . ID=Physo142915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240035;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 136802 137494 . + . ID=Physo142915;Parent=Physo142915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 136802 137494 . + 0 ID=Physo142915;Parent=Physo142915;rank=1 scaffold_124 . exon 136802 137494 . + . ID=Physo142915.1;Parent=Physo142915;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 138743 140009 . + . ID=Physo142916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240036;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 138743 140009 . + . ID=Physo142916;Parent=Physo142916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 138743 139999 . + 0 ID=Physo142916;Parent=Physo142916;rank=1 scaffold_124 . exon 138743 140009 . + . ID=Physo142916.1;Parent=Physo142916;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_124 . repeat_region 140369 140410 . ? . description=trf scaffold_124 . repeat_region 142647 142719 . ? . description=trf scaffold_124 . repeat_region 149041 149116 . ? . description=trf scaffold_124 ensembl protein_coding_gene 140640 141576 . + . ID=Physo142917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240037;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 140640 141576 . + . ID=Physo142917;Parent=Physo142917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 140640 140660 . + 0 ID=Physo142917;Parent=Physo142917;rank=1 scaffold_124 . exon 140640 140660 . + . ID=Physo142917.1;Parent=Physo142917;constitutive=1;rank=1 scaffold_124 . CDS 140699 141421 . + 0 ID=Physo142917;Parent=Physo142917;rank=2 scaffold_124 . exon 140699 141421 . + . ID=Physo142917.2;Parent=Physo142917;constitutive=1;rank=2 scaffold_124 . CDS 141490 141576 . + 0 ID=Physo142917;Parent=Physo142917;rank=3 scaffold_124 . exon 141490 141576 . + . ID=Physo142917.3;Parent=Physo142917;constitutive=1;rank=3 scaffold_124 . biological_region 149568 149572 0.999 + . logic_name=eponine scaffold_124 . biological_region 154149 154152 0.999 - . logic_name=eponine scaffold_124 . repeat_region 159291 159301 . ? . description=dust scaffold_124 ensembl protein_coding_gene 152960 153985 . + . ID=Physo109519;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1240005;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 152960 153985 . + . ID=Physo109519;Parent=Physo109519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 152960 153985 . + 0 ID=Physo109519;Parent=Physo109519;rank=1 scaffold_124 . exon 152960 153985 . + . ID=Physo109519.1;Parent=Physo109519;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 154166 154486 . + . ID=Physo123322;biotype=protein_coding;external_name=estExt_Genewise1.C_1240043;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 154166 154486 . + . ID=Physo123322;Parent=Physo123322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . exon 154166 154486 . + . ID=Physo123322.1;Parent=Physo123322;constitutive=1;ensembl_phase=-1;rank=1 scaffold_124 . CDS 154178 154486 . + 0 ID=Physo123322;Parent=Physo123322;rank=1 scaffold_124 ensembl protein_coding_gene 150079 152755 . + . ID=Physo142918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240038;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 150079 152755 . + . ID=Physo142918;Parent=Physo142918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 150079 150093 . + 0 ID=Physo142918;Parent=Physo142918;rank=1 scaffold_124 . exon 150079 150093 . + . ID=Physo142918.1;Parent=Physo142918;constitutive=1;rank=1 scaffold_124 . CDS 150374 151141 . + 0 ID=Physo142918;Parent=Physo142918;rank=2 scaffold_124 . exon 150374 151141 . + . ID=Physo142918.2;Parent=Physo142918;constitutive=1;rank=2 scaffold_124 . CDS 151279 151624 . + 0 ID=Physo142918;Parent=Physo142918;rank=3 scaffold_124 . exon 151279 151624 . + . ID=Physo142918.3;Parent=Physo142918;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_124 . CDS 151645 152186 . + 0 ID=Physo142918;Parent=Physo142918;rank=4 scaffold_124 . exon 151645 152186 . + . ID=Physo142918.4;Parent=Physo142918;constitutive=1;ensembl_phase=1;rank=4 scaffold_124 . CDS 152330 152366 . + 0 ID=Physo142918;Parent=Physo142918;rank=5 scaffold_124 . exon 152330 152366 . + . ID=Physo142918.5;Parent=Physo142918;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_124 . CDS 152400 152755 . + 0 ID=Physo142918;Parent=Physo142918;rank=6 scaffold_124 . exon 152400 152755 . + . ID=Physo142918.6;Parent=Physo142918;constitutive=1;ensembl_phase=1;rank=6 scaffold_124 . repeat_region 165506 165526 . ? . description=trf scaffold_124 . repeat_region 165708 165759 . ? . description=trf scaffold_124 . repeat_region 168162 168185 . ? . description=trf scaffold_124 . repeat_region 168678 168729 . ? . description=trf scaffold_124 ensembl protein_coding_gene 160075 160761 . - . ID=Physo142921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240041;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 160075 160761 . - . ID=Physo142921;Parent=Physo142921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 160075 160761 . - 0 ID=Physo142921;Parent=Physo142921;rank=1 scaffold_124 . exon 160075 160761 . - . ID=Physo142921.1;Parent=Physo142921;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 162300 162986 . + . ID=Physo142922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240042;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 162300 162986 . + . ID=Physo142922;Parent=Physo142922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 162300 162986 . + 0 ID=Physo142922;Parent=Physo142922;rank=1 scaffold_124 . exon 162300 162986 . + . ID=Physo142922.1;Parent=Physo142922;constitutive=1;rank=1 scaffold_124 ensembl protein_coding_gene 163151 163700 . - . ID=Physo142923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240043;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 163151 163700 . - . ID=Physo142923;Parent=Physo142923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 163151 163191 . - 0 ID=Physo142923;Parent=Physo142923;rank=3 scaffold_124 . exon 163151 163191 . - . ID=Physo142923.3;Parent=Physo142923;constitutive=1;ensembl_phase=1;rank=3 scaffold_124 . CDS 163274 163450 . - 0 ID=Physo142923;Parent=Physo142923;rank=2 scaffold_124 . exon 163274 163450 . - . ID=Physo142923.2;Parent=Physo142923;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_124 . CDS 163523 163700 . - 0 ID=Physo142923;Parent=Physo142923;rank=1 scaffold_124 . exon 163523 163700 . - . ID=Physo142923.1;Parent=Physo142923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_124 ensembl protein_coding_gene 165519 165845 . - . ID=Physo142924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1240044;logic_name=jgi_physo1_1 scaffold_124 ensembl transcript 165519 165845 . - . ID=Physo142924;Parent=Physo142924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_124 . CDS 165519 165845 . - 0 ID=Physo142924;Parent=Physo142924;rank=1 scaffold_124 . exon 165519 165845 . - . ID=Physo142924.1;Parent=Physo142924;constitutive=1;rank=1 scaffold_124 . repeat_region 168774 179321 . ? . description=dust scaffold_124 . biological_region 188334 188336 0.999 + . logic_name=eponine ##gff-version 3 ##sequence-region scaffold_123 1 190223 scaffold_123 . repeat_region 1268 1275 . ? . description=dust scaffold_123 . repeat_region 2658 2671 . ? . description=dust scaffold_123 . repeat_region 4518 4528 . ? . description=dust scaffold_123 . repeat_region 4560 4582 . ? . description=dust scaffold_123 . repeat_region 5509 5561 . ? . description=trf scaffold_123 . repeat_region 7024 7032 . ? . description=dust scaffold_123 ensembl protein_coding_gene 8005 8334 . - . ID=Physo109511;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1230001;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 8005 8334 . - . ID=Physo109511;Parent=Physo109511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 8005 8334 . - 0 ID=Physo109511;Parent=Physo109511;rank=1 scaffold_123 . exon 8005 8334 . - . ID=Physo109511.1;Parent=Physo109511;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 8538 10337 . - . ID=Physo142841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230002;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 8538 10337 . - . ID=Physo142841;Parent=Physo142841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 8538 8574 . - 0 ID=Physo142841;Parent=Physo142841;rank=6 scaffold_123 . exon 8538 8574 . - . ID=Physo142841.6;Parent=Physo142841;constitutive=1;ensembl_phase=2;rank=6 scaffold_123 . CDS 8624 8816 . - 0 ID=Physo142841;Parent=Physo142841;rank=5 scaffold_123 . exon 8624 8816 . - . ID=Physo142841.5;Parent=Physo142841;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_123 . CDS 8866 9005 . - 0 ID=Physo142841;Parent=Physo142841;rank=4 scaffold_123 . exon 8866 9005 . - . ID=Physo142841.4;Parent=Physo142841;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_123 . CDS 9073 9133 . - 0 ID=Physo142841;Parent=Physo142841;rank=3 scaffold_123 . exon 9073 9133 . - . ID=Physo142841.3;Parent=Physo142841;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_123 . CDS 9194 9411 . - 0 ID=Physo142841;Parent=Physo142841;rank=2 scaffold_123 . exon 9194 9411 . - . ID=Physo142841.2;Parent=Physo142841;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 9433 10337 . - 0 ID=Physo142841;Parent=Physo142841;rank=1 scaffold_123 . exon 9433 10337 . - . ID=Physo142841.1;Parent=Physo142841;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . biological_region 10616 10617 0.999 - . logic_name=eponine scaffold_123 . repeat_region 18620 19386 . - . description=GypsyPi-1c_I-int scaffold_123 ensembl protein_coding_gene 14616 16122 . - . ID=Physo142842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230003;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 14616 16122 . - . ID=Physo142842;Parent=Physo142842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 14616 14944 . - 0 ID=Physo142842;Parent=Physo142842;rank=5 scaffold_123 . exon 14616 14944 . - . ID=Physo142842.5;Parent=Physo142842;constitutive=1;ensembl_phase=1;rank=5 scaffold_123 . CDS 14984 15107 . - 0 ID=Physo142842;Parent=Physo142842;rank=4 scaffold_123 . exon 14984 15107 . - . ID=Physo142842.4;Parent=Physo142842;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_123 . CDS 15149 15288 . - 0 ID=Physo142842;Parent=Physo142842;rank=3 scaffold_123 . exon 15149 15288 . - . ID=Physo142842.3;Parent=Physo142842;constitutive=1;ensembl_phase=1;rank=3 scaffold_123 . CDS 15480 15820 . - 0 ID=Physo142842;Parent=Physo142842;rank=2 scaffold_123 . exon 15480 15820 . - . ID=Physo142842.2;Parent=Physo142842;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 15884 16122 . - 0 ID=Physo142842;Parent=Physo142842;rank=1 scaffold_123 . exon 15884 16122 . - . ID=Physo142842.1;Parent=Physo142842;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 ensembl protein_coding_gene 18580 21255 . - . ID=Physo142843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230004;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 18580 21255 . - . ID=Physo142843;Parent=Physo142843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 18580 19555 . - 0 ID=Physo142843;Parent=Physo142843;rank=2 scaffold_123 . exon 18580 19555 . - . ID=Physo142843.2;Parent=Physo142843;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 19706 21255 . - 0 ID=Physo142843;Parent=Physo142843;rank=1 scaffold_123 . repeat_region 19631 19680 . ? . description=dust scaffold_123 . exon 19706 21255 . - . ID=Physo142843.1;Parent=Physo142843;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 ensembl protein_coding_gene 23265 27223 . + . ID=Physo142844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230005;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 23265 27223 . + . ID=Physo142844;Parent=Physo142844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 23265 25310 . + 0 ID=Physo142844;Parent=Physo142844;rank=1 scaffold_123 . exon 23265 25310 . + . ID=Physo142844.1;Parent=Physo142844;constitutive=1;rank=1 scaffold_123 . CDS 25353 26807 . + 0 ID=Physo142844;Parent=Physo142844;rank=2 scaffold_123 . exon 25353 26807 . + . ID=Physo142844.2;Parent=Physo142844;constitutive=1;rank=2 scaffold_123 . CDS 26855 27223 . + 0 ID=Physo142844;Parent=Physo142844;rank=3 scaffold_123 . exon 26855 27223 . + . ID=Physo142844.3;Parent=Physo142844;constitutive=1;rank=3 scaffold_123 . biological_region 29869 29869 0.999 - . logic_name=eponine scaffold_123 . biological_region 31301 31307 0.999 - . logic_name=eponine scaffold_123 . biological_region 31393 31395 0.999 - . logic_name=eponine scaffold_123 . repeat_region 31475 31517 . ? . description=trf scaffold_123 . repeat_region 34238 40807 . ? . description=dust scaffold_123 . repeat_region 42958 42965 . ? . description=dust scaffold_123 . repeat_region 42985 42994 . ? . description=dust scaffold_123 ensembl protein_coding_gene 46719 47515 . + . ID=Physo142845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230006;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 46719 47515 . + . ID=Physo142845;Parent=Physo142845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 46719 46982 . + 0 ID=Physo142845;Parent=Physo142845;rank=1 scaffold_123 . exon 46719 46982 . + . ID=Physo142845.1;Parent=Physo142845;constitutive=1;rank=1 scaffold_123 . CDS 47060 47515 . + 0 ID=Physo142845;Parent=Physo142845;rank=2 scaffold_123 . exon 47060 47515 . + . ID=Physo142845.2;Parent=Physo142845;constitutive=1;rank=2 scaffold_123 ensembl protein_coding_gene 47545 48201 . - . ID=Physo142846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230007;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 47545 48201 . - . ID=Physo142846;Parent=Physo142846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 47545 48201 . - 0 ID=Physo142846;Parent=Physo142846;rank=1 scaffold_123 . exon 47545 48201 . - . ID=Physo142846.1;Parent=Physo142846;constitutive=1;rank=1 scaffold_123 . biological_region 51498 51502 0.999 + . logic_name=eponine scaffold_123 . biological_region 54162 54166 0.999 + . logic_name=eponine scaffold_123 . biological_region 54949 54952 0.999 + . logic_name=eponine scaffold_123 . biological_region 55038 55044 0.999 - . logic_name=eponine scaffold_123 . biological_region 55095 55099 0.999 + . logic_name=eponine scaffold_123 . biological_region 56216 56217 0.999 + . logic_name=eponine scaffold_123 . biological_region 56307 56310 0.999 - . logic_name=eponine scaffold_123 ensembl protein_coding_gene 50613 51701 . - . ID=Physo142847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230008;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 50613 51701 . - . ID=Physo142847;Parent=Physo142847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 50613 50784 . - 0 ID=Physo142847;Parent=Physo142847;rank=2 scaffold_123 . exon 50613 50784 . - . ID=Physo142847.2;Parent=Physo142847;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 50857 51701 . - 0 ID=Physo142847;Parent=Physo142847;rank=1 scaffold_123 . exon 50857 51701 . - . ID=Physo142847.1;Parent=Physo142847;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 ensembl protein_coding_gene 52635 53748 . + . ID=Physo142848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230009;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 52635 53748 . + . ID=Physo142848;Parent=Physo142848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 52635 53258 . + 0 ID=Physo142848;Parent=Physo142848;rank=1 scaffold_123 . exon 52635 53258 . + . ID=Physo142848.1;Parent=Physo142848;constitutive=1;rank=1 scaffold_123 . CDS 53331 53567 . + 0 ID=Physo142848;Parent=Physo142848;rank=2 scaffold_123 . exon 53331 53567 . + . ID=Physo142848.2;Parent=Physo142848;constitutive=1;rank=2 scaffold_123 . CDS 53659 53748 . + 0 ID=Physo142848;Parent=Physo142848;rank=3 scaffold_123 . exon 53659 53748 . + . ID=Physo142848.3;Parent=Physo142848;constitutive=1;rank=3 scaffold_123 ensembl protein_coding_gene 54908 57298 . + . ID=Physo142849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230010;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 54908 57298 . + . ID=Physo142849;Parent=Physo142849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 54908 57298 . + 0 ID=Physo142849;Parent=Physo142849;rank=1 scaffold_123 . exon 54908 57298 . + . ID=Physo142849.1;Parent=Physo142849;constitutive=1;rank=1 scaffold_123 . repeat_region 61022 61045 . ? . description=dust scaffold_123 . repeat_region 61022 61045 . ? . description=trf scaffold_123 . repeat_region 61171 61216 . ? . description=dust scaffold_123 . repeat_region 61194 61216 . ? . description=trf scaffold_123 . repeat_region 65683 65798 . - . description=Gypsy-1-LTR_PI scaffold_123 . repeat_region 65877 66106 . - . description=Gypsy-2-I_PI-int scaffold_123 ensembl protein_coding_gene 64221 65258 . + . ID=Physo123262;biotype=protein_coding;external_name=estExt_Genewise1.C_1230001;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 64221 65258 . + . ID=Physo123262;Parent=Physo123262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 64221 64331 . + 0 ID=Physo123262;Parent=Physo123262;rank=1 scaffold_123 . exon 64221 64331 . + . ID=Physo123262.1;Parent=Physo123262;constitutive=1;rank=1 scaffold_123 . CDS 65066 65257 . + 0 ID=Physo123262;Parent=Physo123262;rank=2 scaffold_123 . exon 65066 65258 . + . ID=Physo123262.2;Parent=Physo123262;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_123 ensembl protein_coding_gene 66070 67540 . + . ID=Physo142852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230013;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 66070 67540 . + . ID=Physo142852;Parent=Physo142852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 66070 66318 . + 0 ID=Physo142852;Parent=Physo142852;rank=1 scaffold_123 . exon 66070 66318 . + . ID=Physo142852.1;Parent=Physo142852;constitutive=1;rank=1 scaffold_123 . CDS 66474 66645 . + 0 ID=Physo142852;Parent=Physo142852;rank=2 scaffold_123 . exon 66474 66645 . + . ID=Physo142852.2;Parent=Physo142852;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_123 . CDS 66720 67151 . + 0 ID=Physo142852;Parent=Physo142852;rank=3 scaffold_123 . CDS 67245 67540 . + 0 ID=Physo142852;Parent=Physo142852;rank=4 scaffold_123 ensembl protein_coding_gene 58769 62272 . - . ID=Physo158655;biotype=protein_coding;external_name=C_scaffold_123000001;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 58769 62272 . - . ID=Physo158655;Parent=Physo158655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 58769 58837 . - 0 ID=Physo158655;Parent=Physo158655;rank=7 scaffold_123 . exon 58769 58837 . - . ID=Physo158655.7;Parent=Physo158655;constitutive=1;rank=7 scaffold_123 . CDS 58913 59159 . - 0 ID=Physo158655;Parent=Physo158655;rank=6 scaffold_123 . exon 58913 59159 . - . ID=Physo158655.6;Parent=Physo158655;constitutive=1;ensembl_phase=2;rank=6 scaffold_123 . CDS 59997 60077 . - 0 ID=Physo158655;Parent=Physo158655;rank=5 scaffold_123 . exon 59997 60077 . - . ID=Physo158655.5;Parent=Physo158655;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_123 . CDS 60147 60371 . - 0 ID=Physo158655;Parent=Physo158655;rank=4 scaffold_123 . exon 60147 60371 . - . ID=Physo158655.4;Parent=Physo158655;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_123 . CDS 60540 60670 . - 0 ID=Physo158655;Parent=Physo158655;rank=3 scaffold_123 . exon 60540 60670 . - . ID=Physo158655.3;Parent=Physo158655;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_123 . CDS 61314 62033 . - 0 ID=Physo158655;Parent=Physo158655;rank=2 scaffold_123 . exon 61314 62033 . - . ID=Physo158655.2;Parent=Physo158655;constitutive=1;rank=2 scaffold_123 . CDS 62174 62272 . - 0 ID=Physo158655;Parent=Physo158655;rank=1 scaffold_123 . exon 62174 62272 . - . ID=Physo158655.1;Parent=Physo158655;constitutive=1;rank=1 scaffold_123 . biological_region 73590 73595 0.999 + . logic_name=eponine scaffold_123 . biological_region 73671 73671 0.999 + . logic_name=eponine scaffold_123 . biological_region 73683 73686 0.999 + . logic_name=eponine scaffold_123 . biological_region 73692 73696 0.999 - . logic_name=eponine scaffold_123 . biological_region 73704 73706 0.999 - . logic_name=eponine scaffold_123 . biological_region 73715 73719 0.999 - . logic_name=eponine scaffold_123 . biological_region 73747 73758 0.999 - . logic_name=eponine scaffold_123 . biological_region 73881 73882 0.999 + . logic_name=eponine scaffold_123 . biological_region 74031 74033 0.999 + . logic_name=eponine scaffold_123 . biological_region 74136 74137 0.999 - . logic_name=eponine scaffold_123 . biological_region 74170 74172 0.999 - . logic_name=eponine scaffold_123 ensembl protein_coding_gene 68164 68654 . - . ID=Physo109512;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1230002;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 68164 68654 . - . ID=Physo109512;Parent=Physo109512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 68164 68234 . - 0 ID=Physo109512;Parent=Physo109512;rank=2 scaffold_123 . exon 68164 68234 . - . ID=Physo109512.2;Parent=Physo109512;constitutive=1;ensembl_phase=1;rank=2 scaffold_123 . CDS 68315 68654 . - 0 ID=Physo109512;Parent=Physo109512;rank=1 scaffold_123 . exon 68315 68654 . - . ID=Physo109512.1;Parent=Physo109512;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 . exon 66720 67151 . + . ID=Physo142852.3;Parent=Physo142852;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_123 . exon 67245 67540 . + . ID=Physo142852.4;Parent=Physo142852;constitutive=1;ensembl_phase=1;rank=4 scaffold_123 ensembl protein_coding_gene 68825 72834 . - . ID=Physo142854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230015;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 68825 72834 . - . ID=Physo142854;Parent=Physo142854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . exon 68825 70528 . - . ID=Physo142854.6;Parent=Physo142854;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_123 . CDS 68826 70528 . - 0 ID=Physo142854;Parent=Physo142854;rank=6 scaffold_123 . CDS 70659 71080 . - 0 ID=Physo142854;Parent=Physo142854;rank=5 scaffold_123 . exon 70659 71080 . - . ID=Physo142854.5;Parent=Physo142854;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_123 . CDS 71285 71513 . - 0 ID=Physo142854;Parent=Physo142854;rank=4 scaffold_123 . exon 71285 71513 . - . ID=Physo142854.4;Parent=Physo142854;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_123 . CDS 71642 72314 . - 0 ID=Physo142854;Parent=Physo142854;rank=3 scaffold_123 . exon 71642 72314 . - . ID=Physo142854.3;Parent=Physo142854;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_123 . CDS 72380 72469 . - 0 ID=Physo142854;Parent=Physo142854;rank=2 scaffold_123 . exon 72380 72469 . - . ID=Physo142854.2;Parent=Physo142854;constitutive=1;rank=2 scaffold_123 . CDS 72676 72834 . - 0 ID=Physo142854;Parent=Physo142854;rank=1 scaffold_123 . exon 72676 72834 . - . ID=Physo142854.1;Parent=Physo142854;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 73420 74309 . + . ID=Physo142855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230016;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 73420 74309 . + . ID=Physo142855;Parent=Physo142855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . exon 73420 74309 . + . ID=Physo142855.1;Parent=Physo142855;constitutive=1;ensembl_phase=-1;rank=1 scaffold_123 . CDS 73452 74309 . + 0 ID=Physo142855;Parent=Physo142855;rank=1 scaffold_123 ensembl protein_coding_gene 74674 77548 . - . ID=Physo142856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230017;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 74674 77548 . - . ID=Physo142856;Parent=Physo142856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 74674 77165 . - 0 ID=Physo142856;Parent=Physo142856;rank=3 scaffold_123 . exon 74674 77165 . - . ID=Physo142856.3;Parent=Physo142856;constitutive=1;ensembl_phase=1;rank=3 scaffold_123 . CDS 77240 77351 . - 0 ID=Physo142856;Parent=Physo142856;rank=2 scaffold_123 . CDS 77447 77548 . - 0 ID=Physo142856;Parent=Physo142856;rank=1 scaffold_123 . repeat_region 77821 77853 . ? . description=trf scaffold_123 . repeat_region 78046 78107 . ? . description=trf scaffold_123 . repeat_region 79788 79816 . ? . description=dust scaffold_123 . repeat_region 79788 79816 . ? . description=trf scaffold_123 . repeat_region 80102 80109 . ? . description=dust scaffold_123 . repeat_region 81340 81362 . ? . description=dust scaffold_123 ensembl protein_coding_gene 77964 79051 . + . ID=Physo109513;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1230003;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 77964 79051 . + . ID=Physo109513;Parent=Physo109513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . exon 77964 79051 . + . ID=Physo109513.1;Parent=Physo109513;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_123 . CDS 78002 78787 . + 0 ID=Physo109513;Parent=Physo109513;rank=1 scaffold_123 ensembl protein_coding_gene 82949 84697 . - . ID=Physo123276;biotype=protein_coding;external_name=estExt_Genewise1.C_1230015;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 82949 84697 . - . ID=Physo123276;Parent=Physo123276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 82949 83137 . - 0 ID=Physo123276;Parent=Physo123276;rank=6 scaffold_123 . exon 82949 83137 . - . ID=Physo123276.6;Parent=Physo123276;constitutive=1;rank=6 scaffold_123 . CDS 83220 83456 . - 0 ID=Physo123276;Parent=Physo123276;rank=5 scaffold_123 . exon 83220 83456 . - . ID=Physo123276.5;Parent=Physo123276;constitutive=1;rank=5 scaffold_123 . CDS 83527 83857 . - 0 ID=Physo123276;Parent=Physo123276;rank=4 scaffold_123 . exon 83527 83857 . - . ID=Physo123276.4;Parent=Physo123276;constitutive=1;ensembl_phase=2;rank=4 scaffold_123 . CDS 83942 83994 . - 0 ID=Physo123276;Parent=Physo123276;rank=3 scaffold_123 . exon 83942 83994 . - . ID=Physo123276.3;Parent=Physo123276;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_123 . CDS 84081 84206 . - 0 ID=Physo123276;Parent=Physo123276;rank=2 scaffold_123 . exon 84081 84206 . - . ID=Physo123276.2;Parent=Physo123276;constitutive=1;rank=2 scaffold_123 . CDS 84287 84670 . - 0 ID=Physo123276;Parent=Physo123276;rank=1 scaffold_123 . exon 84287 84697 . - . ID=Physo123276.1;Parent=Physo123276;constitutive=1;ensembl_phase=-1;rank=1 scaffold_123 . exon 77240 77351 . - . ID=Physo142856.2;Parent=Physo142856;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_123 . exon 77447 77548 . - . ID=Physo142856.1;Parent=Physo142856;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 79160 79783 . - . ID=Physo142858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230019;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 79160 79783 . - . ID=Physo142858;Parent=Physo142858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 79160 79457 . - 0 ID=Physo142858;Parent=Physo142858;rank=2 scaffold_123 . exon 79160 79457 . - . ID=Physo142858.2;Parent=Physo142858;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 . CDS 79641 79783 . - 0 ID=Physo142858;Parent=Physo142858;rank=1 scaffold_123 . exon 79641 79783 . - . ID=Physo142858.1;Parent=Physo142858;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 ensembl protein_coding_gene 80165 80608 . - . ID=Physo142859;biotype=protein_coding;description=PsAvh247 [Source:UniProtKB/TrEMBL%3BAcc:E0W5M6];external_name=estExt_fgenesh1_pg.C_1230020;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 80165 80608 . - . ID=Physo142859;Parent=Physo142859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 80165 80608 . - 0 ID=Physo142859;Parent=Physo142859;rank=1 scaffold_123 . exon 80165 80608 . - . ID=Physo142859.1;Parent=Physo142859;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 85192 88869 . + . ID=Physo142862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230023;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 85192 88869 . + . ID=Physo142862;Parent=Physo142862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 85192 86986 . + 0 ID=Physo142862;Parent=Physo142862;rank=1 scaffold_123 . exon 85192 86986 . + . ID=Physo142862.1;Parent=Physo142862;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 . CDS 87194 87439 . + 0 ID=Physo142862;Parent=Physo142862;rank=2 scaffold_123 . CDS 87611 88869 . + 0 ID=Physo142862;Parent=Physo142862;rank=3 scaffold_123 . biological_region 88108 88110 0.999 - . logic_name=eponine scaffold_123 . exon 87194 87439 . + . ID=Physo142862.2;Parent=Physo142862;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_123 . exon 87611 88869 . + . ID=Physo142862.3;Parent=Physo142862;constitutive=1;ensembl_phase=1;rank=3 scaffold_123 ensembl protein_coding_gene 89079 95659 . + . ID=Physo158656;biotype=protein_coding;external_name=C_scaffold_123000002;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 89079 95659 . + . ID=Physo158656;Parent=Physo158656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 89079 89523 . + 0 ID=Physo158656;Parent=Physo158656;rank=1 scaffold_123 . exon 89079 89523 . + . ID=Physo158656.1;Parent=Physo158656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 . CDS 89595 89924 . + 0 ID=Physo158656;Parent=Physo158656;rank=2 scaffold_123 . exon 89595 89924 . + . ID=Physo158656.2;Parent=Physo158656;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_123 . CDS 90336 90524 . + 0 ID=Physo158656;Parent=Physo158656;rank=3 scaffold_123 . exon 90336 90524 . + . ID=Physo158656.3;Parent=Physo158656;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_123 . CDS 90570 90768 . + 0 ID=Physo158656;Parent=Physo158656;rank=4 scaffold_123 . exon 90570 90768 . + . ID=Physo158656.4;Parent=Physo158656;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_123 . CDS 90793 90860 . + 0 ID=Physo158656;Parent=Physo158656;rank=5 scaffold_123 . exon 90793 90860 . + . ID=Physo158656.5;Parent=Physo158656;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_123 . CDS 90978 91195 . + 0 ID=Physo158656;Parent=Physo158656;rank=6 scaffold_123 . exon 90978 91195 . + . ID=Physo158656.6;Parent=Physo158656;constitutive=1;ensembl_phase=1;rank=6 scaffold_123 . CDS 91445 91646 . + 0 ID=Physo158656;Parent=Physo158656;rank=7 scaffold_123 . exon 91445 91646 . + . ID=Physo158656.7;Parent=Physo158656;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_123 . CDS 92199 92306 . + 0 ID=Physo158656;Parent=Physo158656;rank=8 scaffold_123 . exon 92199 92306 . + . ID=Physo158656.8;Parent=Physo158656;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_123 . CDS 92403 92746 . + 0 ID=Physo158656;Parent=Physo158656;rank=9 scaffold_123 . exon 92403 92746 . + . ID=Physo158656.9;Parent=Physo158656;constitutive=1;ensembl_phase=1;rank=9 scaffold_123 . CDS 92789 93259 . + 0 ID=Physo158656;Parent=Physo158656;rank=10 scaffold_123 . exon 92789 93259 . + . ID=Physo158656.10;Parent=Physo158656;constitutive=1;rank=10 scaffold_123 . CDS 93338 93396 . + 0 ID=Physo158656;Parent=Physo158656;rank=11 scaffold_123 . exon 93338 93396 . + . ID=Physo158656.11;Parent=Physo158656;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_123 . CDS 93457 93594 . + 0 ID=Physo158656;Parent=Physo158656;rank=12 scaffold_123 . exon 93457 93594 . + . ID=Physo158656.12;Parent=Physo158656;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_123 . CDS 93619 93756 . + 0 ID=Physo158656;Parent=Physo158656;rank=13 scaffold_123 . exon 93619 93756 . + . ID=Physo158656.13;Parent=Physo158656;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_123 . CDS 93784 94049 . + 0 ID=Physo158656;Parent=Physo158656;rank=14 scaffold_123 . exon 93784 94049 . + . ID=Physo158656.14;Parent=Physo158656;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=14 scaffold_123 . CDS 94098 94298 . + 0 ID=Physo158656;Parent=Physo158656;rank=15 scaffold_123 . exon 94098 94298 . + . ID=Physo158656.15;Parent=Physo158656;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_123 . CDS 94395 95081 . + 0 ID=Physo158656;Parent=Physo158656;rank=16 scaffold_123 . exon 94395 95081 . + . ID=Physo158656.16;Parent=Physo158656;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=16 scaffold_123 . CDS 95298 95659 . + 0 ID=Physo158656;Parent=Physo158656;rank=17 scaffold_123 . repeat_region 98232 98389 . - . description=Polinton-1_PI scaffold_123 . repeat_region 100683 100710 . ? . description=dust scaffold_123 . repeat_region 101167 101230 . + . description=Polinton-1_PI scaffold_123 . repeat_region 103295 103304 . ? . description=dust scaffold_123 ensembl protein_coding_gene 98042 98398 . - . ID=Physo142864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230025;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 98042 98398 . - . ID=Physo142864;Parent=Physo142864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 98042 98398 . - 0 ID=Physo142864;Parent=Physo142864;rank=1 scaffold_123 . exon 98042 98398 . - . ID=Physo142864.1;Parent=Physo142864;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 98711 100827 . - . ID=Physo142865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230026;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 98711 100827 . - . ID=Physo142865;Parent=Physo142865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 98711 98776 . - 0 ID=Physo142865;Parent=Physo142865;rank=9 scaffold_123 . exon 98711 98776 . - . ID=Physo142865.9;Parent=Physo142865;constitutive=1;rank=9 scaffold_123 . CDS 98848 98918 . - 0 ID=Physo142865;Parent=Physo142865;rank=8 scaffold_123 . exon 98848 98918 . - . ID=Physo142865.8;Parent=Physo142865;constitutive=1;ensembl_phase=1;rank=8 scaffold_123 . CDS 98986 99090 . - 0 ID=Physo142865;Parent=Physo142865;rank=7 scaffold_123 . exon 98986 99090 . - . ID=Physo142865.7;Parent=Physo142865;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_123 . CDS 99172 99268 . - 0 ID=Physo142865;Parent=Physo142865;rank=6 scaffold_123 . exon 99172 99268 . - . ID=Physo142865.6;Parent=Physo142865;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_123 . CDS 99356 99406 . - 0 ID=Physo142865;Parent=Physo142865;rank=5 scaffold_123 . exon 99356 99406 . - . ID=Physo142865.5;Parent=Physo142865;constitutive=1;rank=5 scaffold_123 . CDS 99482 99823 . - 0 ID=Physo142865;Parent=Physo142865;rank=4 scaffold_123 . exon 99482 99823 . - . ID=Physo142865.4;Parent=Physo142865;constitutive=1;rank=4 scaffold_123 . CDS 99911 99993 . - 0 ID=Physo142865;Parent=Physo142865;rank=3 scaffold_123 . exon 99911 99993 . - . ID=Physo142865.3;Parent=Physo142865;constitutive=1;ensembl_phase=1;rank=3 scaffold_123 . CDS 100075 100183 . - 0 ID=Physo142865;Parent=Physo142865;rank=2 scaffold_123 . exon 100075 100183 . - . ID=Physo142865.2;Parent=Physo142865;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_123 . CDS 100258 100827 . - 0 ID=Physo142865;Parent=Physo142865;rank=1 scaffold_123 . exon 100258 100827 . - . ID=Physo142865.1;Parent=Physo142865;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 103335 104006 . - . ID=Physo142866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230027;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 103335 104006 . - . ID=Physo142866;Parent=Physo142866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 103335 104006 . - 0 ID=Physo142866;Parent=Physo142866;rank=1 scaffold_123 . exon 103335 104006 . - . ID=Physo142866.1;Parent=Physo142866;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 104312 105466 . + . ID=Physo142867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230028;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 104312 105466 . + . ID=Physo142867;Parent=Physo142867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 104312 104415 . + 0 ID=Physo142867;Parent=Physo142867;rank=1 scaffold_123 . exon 104312 104415 . + . ID=Physo142867.1;Parent=Physo142867;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . CDS 104491 105412 . + 0 ID=Physo142867;Parent=Physo142867;rank=2 scaffold_123 . exon 104491 105466 . + . ID=Physo142867.2;Parent=Physo142867;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_123 . exon 95298 95659 . + . ID=Physo158656.17;Parent=Physo158656;constitutive=1;ensembl_phase=1;rank=17 scaffold_123 . biological_region 112744 112744 0.999 + . logic_name=eponine scaffold_123 ensembl protein_coding_gene 106872 110892 . - . ID=Physo142868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230029;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 106872 110892 . - . ID=Physo142868;Parent=Physo142868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . exon 106872 109160 . - . ID=Physo142868.3;Parent=Physo142868;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_123 . CDS 107269 109160 . - 0 ID=Physo142868;Parent=Physo142868;rank=3 scaffold_123 . CDS 109199 109199 . - 0 ID=Physo142868;Parent=Physo142868;rank=2 scaffold_123 . exon 109199 109199 . - . ID=Physo142868.2;Parent=Physo142868;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_123 . CDS 109324 110892 . - 0 ID=Physo142868;Parent=Physo142868;rank=1 scaffold_123 . exon 109324 110892 . - . ID=Physo142868.1;Parent=Physo142868;constitutive=1;rank=1 scaffold_123 . repeat_region 114503 114535 . ? . description=trf scaffold_123 . repeat_region 114667 114675 . ? . description=dust scaffold_123 . repeat_region 118547 118568 . ? . description=dust scaffold_123 . repeat_region 118547 118568 . ? . description=trf scaffold_123 . repeat_region 121173 121223 . ? . description=trf scaffold_123 . repeat_region 121173 121223 . ? . description=trf scaffold_123 ensembl protein_coding_gene 119234 120710 . + . ID=Physo142871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230032;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 119234 120710 . + . ID=Physo142871;Parent=Physo142871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 119234 120453 . + 0 ID=Physo142871;Parent=Physo142871;rank=1 scaffold_123 . exon 119234 120453 . + . ID=Physo142871.1;Parent=Physo142871;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . CDS 120653 120710 . + 0 ID=Physo142871;Parent=Physo142871;rank=2 scaffold_123 . exon 120653 120710 . + . ID=Physo142871.2;Parent=Physo142871;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 ensembl protein_coding_gene 121285 122106 . + . ID=Physo142872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230033;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 121285 122106 . + . ID=Physo142872;Parent=Physo142872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 121285 121604 . + 0 ID=Physo142872;Parent=Physo142872;rank=1 scaffold_123 . exon 121285 121604 . + . ID=Physo142872.1;Parent=Physo142872;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_123 . CDS 121692 122106 . + 0 ID=Physo142872;Parent=Physo142872;rank=2 scaffold_123 . exon 121692 122106 . + . ID=Physo142872.2;Parent=Physo142872;constitutive=1;ensembl_phase=2;rank=2 scaffold_123 ensembl protein_coding_gene 114871 118363 . - . ID=Physo158657;biotype=protein_coding;external_name=C_scaffold_123000003;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 114871 118363 . - . ID=Physo158657;Parent=Physo158657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 114871 115337 . - 0 ID=Physo158657;Parent=Physo158657;rank=7 scaffold_123 . exon 114871 115337 . - . ID=Physo158657.7;Parent=Physo158657;constitutive=1;ensembl_phase=1;rank=7 scaffold_123 . CDS 115542 116153 . - 0 ID=Physo158657;Parent=Physo158657;rank=6 scaffold_123 . exon 115542 116153 . - . ID=Physo158657.6;Parent=Physo158657;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_123 . CDS 116220 116423 . - 0 ID=Physo158657;Parent=Physo158657;rank=5 scaffold_123 . exon 116220 116423 . - . ID=Physo158657.5;Parent=Physo158657;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_123 . CDS 116475 116793 . - 0 ID=Physo158657;Parent=Physo158657;rank=4 scaffold_123 . exon 116475 116793 . - . ID=Physo158657.4;Parent=Physo158657;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_123 . CDS 117497 117604 . - 0 ID=Physo158657;Parent=Physo158657;rank=3 scaffold_123 . exon 117497 117604 . - . ID=Physo158657.3;Parent=Physo158657;constitutive=1;rank=3 scaffold_123 . CDS 117656 117906 . - 0 ID=Physo158657;Parent=Physo158657;rank=2 scaffold_123 . exon 117656 117906 . - . ID=Physo158657.2;Parent=Physo158657;constitutive=1;ensembl_phase=1;rank=2 scaffold_123 . CDS 117988 118363 . - 0 ID=Physo158657;Parent=Physo158657;rank=1 scaffold_123 . exon 117988 118363 . - . ID=Physo158657.1;Parent=Physo158657;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 . biological_region 127633 127635 0.999 - . logic_name=eponine scaffold_123 . biological_region 129466 129468 0.999 + . logic_name=eponine scaffold_123 . biological_region 129512 129517 0.999 + . logic_name=eponine scaffold_123 . biological_region 129555 129557 0.999 + . logic_name=eponine scaffold_123 . biological_region 129861 129868 0.999 + . logic_name=eponine scaffold_123 . biological_region 130603 130604 0.999 - . logic_name=eponine scaffold_123 ensembl protein_coding_gene 128851 130856 . - . ID=Physo142873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230034;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 128851 130856 . - . ID=Physo142873;Parent=Physo142873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . exon 128851 130856 . - . ID=Physo142873.1;Parent=Physo142873;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_123 . CDS 128853 130856 . - 0 ID=Physo142873;Parent=Physo142873;rank=1 scaffold_123 ensembl protein_coding_gene 132128 134779 . + . ID=Physo142874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230035;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 132128 134779 . + . ID=Physo142874;Parent=Physo142874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 132128 133018 . + 0 ID=Physo142874;Parent=Physo142874;rank=1 scaffold_123 . exon 132128 133018 . + . ID=Physo142874.1;Parent=Physo142874;constitutive=1;rank=1 scaffold_123 . CDS 133160 133529 . + 0 ID=Physo142874;Parent=Physo142874;rank=2 scaffold_123 . exon 133160 133529 . + . ID=Physo142874.2;Parent=Physo142874;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_123 . CDS 134067 134779 . + 0 ID=Physo142874;Parent=Physo142874;rank=3 scaffold_123 . repeat_region 135037 135047 . ? . description=dust scaffold_123 . exon 134067 134779 . + . ID=Physo142874.3;Parent=Physo142874;constitutive=1;ensembl_phase=1;rank=3 scaffold_123 ensembl protein_coding_gene 135521 137674 . + . ID=Physo142875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230036;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 135521 137674 . + . ID=Physo142875;Parent=Physo142875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . exon 135521 137674 . + . ID=Physo142875.1;Parent=Physo142875;constitutive=1;ensembl_phase=-1;rank=1 scaffold_123 . CDS 135551 137674 . + 0 ID=Physo142875;Parent=Physo142875;rank=1 scaffold_123 ensembl protein_coding_gene 138056 144861 . - . ID=Physo158659;biotype=protein_coding;external_name=C_scaffold_123000005;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 138056 144861 . - . ID=Physo158659;Parent=Physo158659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 138056 138155 . - 0 ID=Physo158659;Parent=Physo158659;rank=15 scaffold_123 . exon 138056 138155 . - . ID=Physo158659.15;Parent=Physo158659;constitutive=1;ensembl_phase=2;rank=15 scaffold_123 . CDS 138428 138634 . - 0 ID=Physo158659;Parent=Physo158659;rank=14 scaffold_123 . exon 138428 138634 . - . ID=Physo158659.14;Parent=Physo158659;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=14 scaffold_123 . CDS 138749 138984 . - 0 ID=Physo158659;Parent=Physo158659;rank=13 scaffold_123 . exon 138749 138984 . - . ID=Physo158659.13;Parent=Physo158659;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_123 . CDS 139009 139620 . - 0 ID=Physo158659;Parent=Physo158659;rank=12 scaffold_123 . exon 139009 139620 . - . ID=Physo158659.12;Parent=Physo158659;constitutive=1;rank=12 scaffold_123 . CDS 139756 140367 . - 0 ID=Physo158659;Parent=Physo158659;rank=11 scaffold_123 . exon 139756 140367 . - . ID=Physo158659.11;Parent=Physo158659;constitutive=1;rank=11 scaffold_123 . CDS 140464 141109 . - 0 ID=Physo158659;Parent=Physo158659;rank=10 scaffold_123 . exon 140464 141109 . - . ID=Physo158659.10;Parent=Physo158659;constitutive=1;ensembl_phase=2;rank=10 scaffold_123 . CDS 141230 141378 . - 0 ID=Physo158659;Parent=Physo158659;rank=9 scaffold_123 . exon 141230 141378 . - . ID=Physo158659.9;Parent=Physo158659;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_123 . CDS 141484 141792 . - 0 ID=Physo158659;Parent=Physo158659;rank=8 scaffold_123 . exon 141484 141792 . - . ID=Physo158659.8;Parent=Physo158659;constitutive=1;rank=8 scaffold_123 . CDS 141868 141954 . - 0 ID=Physo158659;Parent=Physo158659;rank=7 scaffold_123 . exon 141868 141954 . - . ID=Physo158659.7;Parent=Physo158659;constitutive=1;rank=7 scaffold_123 . CDS 142000 142167 . - 0 ID=Physo158659;Parent=Physo158659;rank=6 scaffold_123 . exon 142000 142167 . - . ID=Physo158659.6;Parent=Physo158659;constitutive=1;rank=6 scaffold_123 . CDS 142189 142285 . - 0 ID=Physo158659;Parent=Physo158659;rank=5 scaffold_123 . exon 142189 142285 . - . ID=Physo158659.5;Parent=Physo158659;constitutive=1;ensembl_phase=2;rank=5 scaffold_123 . CDS 142430 143097 . - 0 ID=Physo158659;Parent=Physo158659;rank=4 scaffold_123 . exon 142430 143097 . - . ID=Physo158659.4;Parent=Physo158659;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_123 . CDS 143191 143340 . - 0 ID=Physo158659;Parent=Physo158659;rank=3 scaffold_123 . CDS 143374 144659 . - 0 ID=Physo158659;Parent=Physo158659;rank=2 scaffold_123 . CDS 144681 144861 . - 0 ID=Physo158659;Parent=Physo158659;rank=1 scaffold_123 . biological_region 146396 146397 0.999 + . logic_name=eponine scaffold_123 . biological_region 146560 146561 0.999 - . logic_name=eponine scaffold_123 . biological_region 146598 146601 0.999 + . logic_name=eponine scaffold_123 ensembl protein_coding_gene 145591 147842 . + . ID=Physo142877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230038;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 145591 147842 . + . ID=Physo142877;Parent=Physo142877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 145591 147535 . + 0 ID=Physo142877;Parent=Physo142877;rank=1 scaffold_123 . exon 145591 147535 . + . ID=Physo142877.1;Parent=Physo142877;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 . CDS 147826 147842 . + 0 ID=Physo142877;Parent=Physo142877;rank=2 scaffold_123 . exon 147826 147842 . + . ID=Physo142877.2;Parent=Physo142877;constitutive=1;ensembl_phase=1;rank=2 scaffold_123 ensembl protein_coding_gene 150418 151394 . - . ID=Physo142878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230039;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 150418 151394 . - . ID=Physo142878;Parent=Physo142878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 150418 151149 . - 0 ID=Physo142878;Parent=Physo142878;rank=2 scaffold_123 . exon 150418 151149 . - . ID=Physo142878.2;Parent=Physo142878;constitutive=1;rank=2 scaffold_123 . CDS 151237 151320 . - 0 ID=Physo142878;Parent=Physo142878;rank=1 scaffold_123 . exon 151237 151394 . - . ID=Physo142878.1;Parent=Physo142878;constitutive=1;ensembl_phase=-1;rank=1 scaffold_123 . exon 143191 143340 . - . ID=Physo158659.3;Parent=Physo158659;constitutive=1;rank=3 scaffold_123 . exon 143374 144659 . - . ID=Physo158659.2;Parent=Physo158659;constitutive=1;ensembl_phase=1;rank=2 scaffold_123 . exon 144681 144861 . - . ID=Physo158659.1;Parent=Physo158659;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_123 . repeat_region 153456 153804 . ? . description=dust scaffold_123 . repeat_region 154312 154442 . ? . description=trf scaffold_123 . repeat_region 154388 154409 . ? . description=dust scaffold_123 . repeat_region 155635 155710 . ? . description=trf scaffold_123 . repeat_region 155817 155958 . ? . description=trf scaffold_123 . repeat_region 156219 156268 . ? . description=dust scaffold_123 . repeat_region 158067 163050 . ? . description=dust scaffold_123 ensembl protein_coding_gene 152318 153448 . - . ID=Physo142879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230040;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 152318 153448 . - . ID=Physo142879;Parent=Physo142879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 152318 153448 . - 0 ID=Physo142879;Parent=Physo142879;rank=1 scaffold_123 . exon 152318 153448 . - . ID=Physo142879.1;Parent=Physo142879;constitutive=1;rank=1 scaffold_123 ensembl protein_coding_gene 154490 154936 . + . ID=Physo142880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1230041;logic_name=jgi_physo1_1 scaffold_123 ensembl transcript 154490 154936 . + . ID=Physo142880;Parent=Physo142880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_123 . CDS 154490 154936 . + 0 ID=Physo142880;Parent=Physo142880;rank=1 scaffold_123 . exon 154490 154936 . + . ID=Physo142880.1;Parent=Physo142880;constitutive=1;rank=1 scaffold_123 . repeat_region 163051 189348 . ? . description=dust scaffold_123 . repeat_region 189349 190223 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_122 1 192762 scaffold_122 . biological_region 1756 1760 0.999 - . logic_name=eponine scaffold_122 . repeat_region 3945 3964 . ? . description=trf scaffold_122 . biological_region 8278 8283 0.999 + . logic_name=eponine scaffold_122 . biological_region 8425 8427 0.999 + . logic_name=eponine scaffold_122 . biological_region 8457 8461 0.999 + . logic_name=eponine scaffold_122 . biological_region 8746 8750 0.999 + . logic_name=eponine scaffold_122 ensembl pseudogene 8396 9835 . + . ID=Physo123198;biotype=pseudogene;external_name=estExt_Genewise1.C_1220003;logic_name=jgi_physo1_1 scaffold_122 ensembl pseudogene 8396 9835 . + . ID=Physo123198;Parent=Physo123198;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_122 . exon 8396 9835 . + . ID=Physo123198.1;Parent=Physo123198;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_122 ensembl protein_coding_gene 74 1253 . + . ID=Physo142774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220001;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 74 1253 . + . ID=Physo142774;Parent=Physo142774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . exon 74 1253 . + . ID=Physo142774.1;Parent=Physo142774;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_122 . CDS 224 1147 . + 0 ID=Physo142774;Parent=Physo142774;rank=1 scaffold_122 ensembl protein_coding_gene 1390 2438 . + . ID=Physo142775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220002;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 1390 2438 . + . ID=Physo142775;Parent=Physo142775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 1390 1471 . + 0 ID=Physo142775;Parent=Physo142775;rank=1 scaffold_122 . exon 1390 1471 . + . ID=Physo142775.1;Parent=Physo142775;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 . CDS 1561 2048 . + 0 ID=Physo142775;Parent=Physo142775;rank=2 scaffold_122 . exon 1561 2048 . + . ID=Physo142775.2;Parent=Physo142775;constitutive=1;ensembl_phase=1;rank=2 scaffold_122 . CDS 2123 2249 . + 0 ID=Physo142775;Parent=Physo142775;rank=3 scaffold_122 . exon 2123 2249 . + . ID=Physo142775.3;Parent=Physo142775;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_122 . CDS 2278 2438 . + 0 ID=Physo142775;Parent=Physo142775;rank=4 scaffold_122 . exon 2278 2438 . + . ID=Physo142775.4;Parent=Physo142775;constitutive=1;ensembl_phase=1;rank=4 scaffold_122 ensembl protein_coding_gene 3372 5228 . + . ID=Physo142776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220003;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 3372 5228 . + . ID=Physo142776;Parent=Physo142776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 3372 5228 . + 0 ID=Physo142776;Parent=Physo142776;rank=1 scaffold_122 . exon 3372 5228 . + . ID=Physo142776.1;Parent=Physo142776;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 5937 7969 . + . ID=Physo142777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220004;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 5937 7969 . + . ID=Physo142777;Parent=Physo142777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . exon 5937 7969 . + . ID=Physo142777.1;Parent=Physo142777;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_122 . CDS 6008 7852 . + 0 ID=Physo142777;Parent=Physo142777;rank=1 scaffold_122 . repeat_region 17036 17048 . ? . description=dust scaffold_122 . repeat_region 17226 17235 . ? . description=dust scaffold_122 . repeat_region 17787 17812 . ? . description=dust scaffold_122 . repeat_region 18520 18527 . ? . description=dust scaffold_122 ensembl protein_coding_gene 13867 15407 . - . ID=Physo123207;biotype=protein_coding;external_name=estExt_Genewise1.C_1220012;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 13867 15407 . - . ID=Physo123207;Parent=Physo123207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 13867 14077 . - 0 ID=Physo123207;Parent=Physo123207;rank=4 scaffold_122 . exon 13867 14077 . - . ID=Physo123207.4;Parent=Physo123207;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 14168 14870 . - 0 ID=Physo123207;Parent=Physo123207;rank=3 scaffold_122 . exon 14168 14870 . - . ID=Physo123207.3;Parent=Physo123207;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_122 . CDS 14961 15092 . - 0 ID=Physo123207;Parent=Physo123207;rank=2 scaffold_122 . exon 14961 15092 . - . ID=Physo123207.2;Parent=Physo123207;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_122 . CDS 15185 15389 . - 0 ID=Physo123207;Parent=Physo123207;rank=1 scaffold_122 . exon 15185 15407 . - . ID=Physo123207.1;Parent=Physo123207;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_122 ensembl protein_coding_gene 12454 13470 . + . ID=Physo158626;biotype=protein_coding;external_name=C_scaffold_122000001;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 12454 13470 . + . ID=Physo158626;Parent=Physo158626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 12454 12861 . + 0 ID=Physo158626;Parent=Physo158626;rank=1 scaffold_122 . exon 12454 12861 . + . ID=Physo158626.1;Parent=Physo158626;constitutive=1;rank=1 scaffold_122 . CDS 12949 13470 . + 0 ID=Physo158626;Parent=Physo158626;rank=2 scaffold_122 . exon 12949 13470 . + . ID=Physo158626.2;Parent=Physo158626;constitutive=1;rank=2 scaffold_122 . biological_region 20260 20263 0.999 - . logic_name=eponine scaffold_122 . biological_region 20475 20475 0.999 + . logic_name=eponine scaffold_122 . biological_region 20641 20644 0.999 - . logic_name=eponine scaffold_122 . biological_region 20647 20650 0.999 + . logic_name=eponine scaffold_122 . biological_region 22173 22179 0.999 + . logic_name=eponine scaffold_122 . biological_region 22223 22228 0.999 + . logic_name=eponine scaffold_122 . biological_region 22244 22245 0.999 + . logic_name=eponine scaffold_122 . biological_region 22250 22258 0.999 - . logic_name=eponine scaffold_122 . biological_region 22250 22264 0.999 + . logic_name=eponine scaffold_122 . biological_region 22285 22287 0.999 - . logic_name=eponine scaffold_122 . biological_region 22299 22307 0.999 - . logic_name=eponine scaffold_122 . biological_region 22303 22313 0.999 + . logic_name=eponine scaffold_122 . biological_region 22315 22322 0.999 - . logic_name=eponine scaffold_122 . biological_region 22363 22370 0.999 - . logic_name=eponine scaffold_122 . biological_region 22410 22412 0.999 - . logic_name=eponine scaffold_122 . biological_region 22432 22432 0.999 - . logic_name=eponine scaffold_122 . biological_region 22473 22476 0.999 - . logic_name=eponine scaffold_122 . biological_region 22678 22680 0.999 + . logic_name=eponine scaffold_122 . biological_region 22854 22856 0.999 + . logic_name=eponine scaffold_122 . biological_region 23001 23003 0.999 + . logic_name=eponine scaffold_122 . biological_region 24163 24164 0.999 - . logic_name=eponine scaffold_122 . biological_region 24638 24638 0.999 + . logic_name=eponine scaffold_122 . repeat_region 25316 25341 . ? . description=trf scaffold_122 . biological_region 25345 25347 0.999 - . logic_name=eponine scaffold_122 . biological_region 25401 25401 0.999 + . logic_name=eponine scaffold_122 . repeat_region 26154 26183 . ? . description=trf scaffold_122 . biological_region 27124 27128 0.999 + . logic_name=eponine scaffold_122 . biological_region 28090 28093 0.999 + . logic_name=eponine scaffold_122 . biological_region 28266 28271 0.999 - . logic_name=eponine scaffold_122 ensembl protein_coding_gene 19509 20534 . + . ID=Physo109508;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1220002;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 19509 20534 . + . ID=Physo109508;Parent=Physo109508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 19509 20534 . + 0 ID=Physo109508;Parent=Physo109508;rank=1 scaffold_122 . exon 19509 20534 . + . ID=Physo109508.1;Parent=Physo109508;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 22174 23682 . + . ID=Physo142782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220009;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 22174 23682 . + . ID=Physo142782;Parent=Physo142782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 22174 23682 . + 0 ID=Physo142782;Parent=Physo142782;rank=1 scaffold_122 . exon 22174 23682 . + . ID=Physo142782.1;Parent=Physo142782;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 23920 25047 . - . ID=Physo142783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220010;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 23920 25047 . - . ID=Physo142783;Parent=Physo142783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 23920 23972 . - 0 ID=Physo142783;Parent=Physo142783;rank=3 scaffold_122 . exon 23920 23972 . - . ID=Physo142783.3;Parent=Physo142783;constitutive=1;ensembl_phase=1;rank=3 scaffold_122 . CDS 24044 24370 . - 0 ID=Physo142783;Parent=Physo142783;rank=2 scaffold_122 . exon 24044 24370 . - . ID=Physo142783.2;Parent=Physo142783;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_122 . CDS 24468 25047 . - 0 ID=Physo142783;Parent=Physo142783;rank=1 scaffold_122 . exon 24468 25047 . - . ID=Physo142783.1;Parent=Physo142783;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 ensembl protein_coding_gene 25874 28944 . + . ID=Physo142784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220011;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 25874 28944 . + . ID=Physo142784;Parent=Physo142784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 25874 26253 . + 0 ID=Physo142784;Parent=Physo142784;rank=1 scaffold_122 . exon 25874 26253 . + . ID=Physo142784.1;Parent=Physo142784;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . CDS 26308 26383 . + 0 ID=Physo142784;Parent=Physo142784;rank=2 scaffold_122 . exon 26308 26383 . + . ID=Physo142784.2;Parent=Physo142784;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 26501 27351 . + 0 ID=Physo142784;Parent=Physo142784;rank=3 scaffold_122 . exon 26501 27351 . + . ID=Physo142784.3;Parent=Physo142784;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_122 . CDS 27792 28944 . + 0 ID=Physo142784;Parent=Physo142784;rank=4 scaffold_122 . exon 27792 28944 . + . ID=Physo142784.4;Parent=Physo142784;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . repeat_region 29069 29077 . ? . description=dust scaffold_122 . repeat_region 35365 35414 . ? . description=dust scaffold_122 ensembl protein_coding_gene 29379 30140 . + . ID=Physo142785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220012;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 29379 30140 . + . ID=Physo142785;Parent=Physo142785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 29379 30140 . + 0 ID=Physo142785;Parent=Physo142785;rank=1 scaffold_122 . exon 29379 30140 . + . ID=Physo142785.1;Parent=Physo142785;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 35627 37288 . - . ID=Physo142786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220013;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 35627 37288 . - . ID=Physo142786;Parent=Physo142786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 35627 37288 . - 0 ID=Physo142786;Parent=Physo142786;rank=1 scaffold_122 . exon 35627 37288 . - . ID=Physo142786.1;Parent=Physo142786;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 37553 38360 . - . ID=Physo142787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220014;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 37553 38360 . - . ID=Physo142787;Parent=Physo142787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . exon 37553 37989 . - . ID=Physo142787.3;Parent=Physo142787;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_122 . CDS 37642 37989 . - 0 ID=Physo142787;Parent=Physo142787;rank=3 scaffold_122 . CDS 38072 38266 . - 0 ID=Physo142787;Parent=Physo142787;rank=2 scaffold_122 . exon 38072 38266 . - . ID=Physo142787.2;Parent=Physo142787;constitutive=1;rank=2 scaffold_122 . CDS 38337 38360 . - 0 ID=Physo142787;Parent=Physo142787;rank=1 scaffold_122 . exon 38337 38360 . - . ID=Physo142787.1;Parent=Physo142787;constitutive=1;rank=1 scaffold_122 . biological_region 42491 42495 0.999 - . logic_name=eponine scaffold_122 . biological_region 44678 44681 0.999 + . logic_name=eponine scaffold_122 . biological_region 44752 44759 0.999 + . logic_name=eponine scaffold_122 . biological_region 44799 44810 0.999 + . logic_name=eponine scaffold_122 . biological_region 44800 44803 0.999 - . logic_name=eponine scaffold_122 . biological_region 44899 44900 0.999 + . logic_name=eponine scaffold_122 . biological_region 45244 45254 0.999 - . logic_name=eponine scaffold_122 . biological_region 45279 45281 0.999 - . logic_name=eponine scaffold_122 . biological_region 47543 47545 0.999 - . logic_name=eponine scaffold_122 . biological_region 47864 47865 0.999 + . logic_name=eponine scaffold_122 . biological_region 47925 47928 0.999 - . logic_name=eponine scaffold_122 ensembl protein_coding_gene 40590 42478 . - . ID=Physo123213;biotype=protein_coding;external_name=estExt_Genewise1.C_1220018;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 40590 42478 . - . ID=Physo123213;Parent=Physo123213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 40590 40720 . - 0 ID=Physo123213;Parent=Physo123213;rank=5 scaffold_122 . exon 40590 40720 . - . ID=Physo123213.5;Parent=Physo123213;constitutive=1;ensembl_phase=1;rank=5 scaffold_122 . CDS 40790 41709 . - 0 ID=Physo123213;Parent=Physo123213;rank=4 scaffold_122 . exon 40790 41709 . - . ID=Physo123213.4;Parent=Physo123213;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 41861 42097 . - 0 ID=Physo123213;Parent=Physo123213;rank=3 scaffold_122 . exon 41861 42097 . - . ID=Physo123213.3;Parent=Physo123213;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_122 . CDS 42181 42281 . - 0 ID=Physo123213;Parent=Physo123213;rank=2 scaffold_122 . exon 42181 42281 . - . ID=Physo123213.2;Parent=Physo123213;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_122 . CDS 42380 42478 . - 0 ID=Physo123213;Parent=Physo123213;rank=1 scaffold_122 . exon 42380 42478 . - . ID=Physo123213.1;Parent=Physo123213;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 38872 40401 . + . ID=Physo142788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220015;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 38872 40401 . + . ID=Physo142788;Parent=Physo142788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 38872 40401 . + 0 ID=Physo142788;Parent=Physo142788;rank=1 scaffold_122 . exon 38872 40401 . + . ID=Physo142788.1;Parent=Physo142788;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 45620 49368 . - . ID=Physo142790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220017;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 45620 49368 . - . ID=Physo142790;Parent=Physo142790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . exon 45620 45800 . - . ID=Physo142790.13;Parent=Physo142790;constitutive=1;ensembl_end_phase=-1;rank=13 scaffold_122 . CDS 45699 45800 . - 0 ID=Physo142790;Parent=Physo142790;rank=13 scaffold_122 . CDS 45876 45965 . - 0 ID=Physo142790;Parent=Physo142790;rank=12 scaffold_122 . exon 45876 45965 . - . ID=Physo142790.12;Parent=Physo142790;constitutive=1;rank=12 scaffold_122 . CDS 46044 46133 . - 0 ID=Physo142790;Parent=Physo142790;rank=11 scaffold_122 . exon 46044 46133 . - . ID=Physo142790.11;Parent=Physo142790;constitutive=1;rank=11 scaffold_122 . CDS 46199 46256 . - 0 ID=Physo142790;Parent=Physo142790;rank=10 scaffold_122 . exon 46199 46256 . - . ID=Physo142790.10;Parent=Physo142790;constitutive=1;ensembl_phase=2;rank=10 scaffold_122 . CDS 46332 46384 . - 0 ID=Physo142790;Parent=Physo142790;rank=9 scaffold_122 . exon 46332 46384 . - . ID=Physo142790.9;Parent=Physo142790;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_122 . CDS 46459 46534 . - 0 ID=Physo142790;Parent=Physo142790;rank=8 scaffold_122 . exon 46459 46534 . - . ID=Physo142790.8;Parent=Physo142790;constitutive=1;ensembl_phase=2;rank=8 scaffold_122 . CDS 46611 46655 . - 0 ID=Physo142790;Parent=Physo142790;rank=7 scaffold_122 . exon 46611 46655 . - . ID=Physo142790.7;Parent=Physo142790;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_122 . CDS 46734 46803 . - 0 ID=Physo142790;Parent=Physo142790;rank=6 scaffold_122 . exon 46734 46803 . - . ID=Physo142790.6;Parent=Physo142790;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_122 . CDS 46973 47578 . - 0 ID=Physo142790;Parent=Physo142790;rank=5 scaffold_122 . exon 46973 47578 . - . ID=Physo142790.5;Parent=Physo142790;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_122 . CDS 47662 48009 . - 0 ID=Physo142790;Parent=Physo142790;rank=4 scaffold_122 . exon 47662 48009 . - . ID=Physo142790.4;Parent=Physo142790;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_122 . CDS 48637 48708 . - 0 ID=Physo142790;Parent=Physo142790;rank=3 scaffold_122 . CDS 48810 48851 . - 0 ID=Physo142790;Parent=Physo142790;rank=2 scaffold_122 . CDS 48900 49368 . - 0 ID=Physo142790;Parent=Physo142790;rank=1 scaffold_122 ensembl protein_coding_gene 43660 45216 . - . ID=Physo158630;biotype=protein_coding;external_name=C_scaffold_122000005;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 43660 45216 . - . ID=Physo158630;Parent=Physo158630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 43660 44128 . - 0 ID=Physo158630;Parent=Physo158630;rank=4 scaffold_122 . exon 43660 44128 . - . ID=Physo158630.4;Parent=Physo158630;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 44255 44406 . - 0 ID=Physo158630;Parent=Physo158630;rank=3 scaffold_122 . exon 44255 44406 . - . ID=Physo158630.3;Parent=Physo158630;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_122 . CDS 44486 44974 . - 0 ID=Physo158630;Parent=Physo158630;rank=2 scaffold_122 . exon 44486 44974 . - . ID=Physo158630.2;Parent=Physo158630;constitutive=1;rank=2 scaffold_122 . CDS 45061 45216 . - 0 ID=Physo158630;Parent=Physo158630;rank=1 scaffold_122 . exon 45061 45216 . - . ID=Physo158630.1;Parent=Physo158630;constitutive=1;rank=1 scaffold_122 . exon 48637 48708 . - . ID=Physo142790.3;Parent=Physo142790;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_122 . exon 48810 48851 . - . ID=Physo142790.2;Parent=Physo142790;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_122 . exon 48900 49368 . - . ID=Physo142790.1;Parent=Physo142790;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 ensembl protein_coding_gene 57356 57935 . - . ID=Physo142795;biotype=protein_coding;description=PsAvh6 [Source:UniProtKB/TrEMBL%3BAcc:E0W5M5];external_name=estExt_fgenesh1_pg.C_1220022;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 57356 57935 . - . ID=Physo142795;Parent=Physo142795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . exon 57356 57935 . - . ID=Physo142795.1;Parent=Physo142795;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_122 . CDS 57518 57895 . - 0 ID=Physo142795;Parent=Physo142795;rank=1 scaffold_122 ensembl protein_coding_gene 49575 52043 . + . ID=Physo158636;biotype=protein_coding;external_name=C_scaffold_122000011;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 49575 52043 . + . ID=Physo158636;Parent=Physo158636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 49575 50092 . + 0 ID=Physo158636;Parent=Physo158636;rank=1 scaffold_122 . exon 49575 50092 . + . ID=Physo158636.1;Parent=Physo158636;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . CDS 50921 52043 . + 0 ID=Physo158636;Parent=Physo158636;rank=2 scaffold_122 . exon 50921 52043 . + . ID=Physo158636.2;Parent=Physo158636;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 ensembl protein_coding_gene 53190 56064 . - . ID=Physo158637;biotype=protein_coding;external_name=C_scaffold_122000012;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 53190 56064 . - . ID=Physo158637;Parent=Physo158637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 53190 54046 . - 0 ID=Physo158637;Parent=Physo158637;rank=5 scaffold_122 . exon 53190 54046 . - . ID=Physo158637.5;Parent=Physo158637;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_122 . CDS 54068 54989 . - 0 ID=Physo158637;Parent=Physo158637;rank=4 scaffold_122 . exon 54068 54989 . - . ID=Physo158637.4;Parent=Physo158637;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 55036 55040 . - 0 ID=Physo158637;Parent=Physo158637;rank=3 scaffold_122 . exon 55036 55040 . - . ID=Physo158637.3;Parent=Physo158637;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_122 . CDS 55207 55611 . - 0 ID=Physo158637;Parent=Physo158637;rank=2 scaffold_122 . exon 55207 55611 . - . ID=Physo158637.2;Parent=Physo158637;constitutive=1;rank=2 scaffold_122 . CDS 55633 56064 . - 0 ID=Physo158637;Parent=Physo158637;rank=1 scaffold_122 . exon 55633 56064 . - . ID=Physo158637.1;Parent=Physo158637;constitutive=1;rank=1 scaffold_122 . repeat_region 59161 59206 . ? . description=trf scaffold_122 . repeat_region 59171 59213 . ? . description=trf scaffold_122 . repeat_region 59437 59453 . ? . description=dust scaffold_122 . repeat_region 60021 60031 . ? . description=dust scaffold_122 . biological_region 62753 62754 0.999 - . logic_name=eponine scaffold_122 . biological_region 63170 63171 0.999 + . logic_name=eponine scaffold_122 . biological_region 63292 63293 0.999 - . logic_name=eponine scaffold_122 . repeat_region 64941 65046 . + . description=(TCG)n scaffold_122 . repeat_region 64944 65046 . ? . description=trf scaffold_122 . repeat_region 64987 65046 . ? . description=dust scaffold_122 ensembl protein_coding_gene 60437 65581 . - . ID=Physo142796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220023;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 60437 65581 . - . ID=Physo142796;Parent=Physo142796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . exon 60437 64034 . - . ID=Physo142796.5;Parent=Physo142796;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_122 . CDS 60443 64034 . - 0 ID=Physo142796;Parent=Physo142796;rank=5 scaffold_122 . CDS 64191 64222 . - 0 ID=Physo142796;Parent=Physo142796;rank=4 scaffold_122 . exon 64191 64222 . - . ID=Physo142796.4;Parent=Physo142796;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_122 . CDS 64412 65098 . - 0 ID=Physo142796;Parent=Physo142796;rank=3 scaffold_122 . exon 64412 65098 . - . ID=Physo142796.3;Parent=Physo142796;constitutive=1;rank=3 scaffold_122 . CDS 65309 65433 . - 0 ID=Physo142796;Parent=Physo142796;rank=2 scaffold_122 . exon 65309 65433 . - . ID=Physo142796.2;Parent=Physo142796;constitutive=1;ensembl_phase=1;rank=2 scaffold_122 . CDS 65536 65581 . - 0 ID=Physo142796;Parent=Physo142796;rank=1 scaffold_122 . exon 65536 65581 . - . ID=Physo142796.1;Parent=Physo142796;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 ensembl protein_coding_gene 66943 75952 . - . ID=Physo158638;biotype=protein_coding;external_name=C_scaffold_122000013;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 66943 75952 . - . ID=Physo158638;Parent=Physo158638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 66943 67014 . - 0 ID=Physo158638;Parent=Physo158638;rank=18 scaffold_122 . exon 66943 67014 . - . ID=Physo158638.18;Parent=Physo158638;constitutive=1;rank=18 scaffold_122 . CDS 67079 67333 . - 0 ID=Physo158638;Parent=Physo158638;rank=17 scaffold_122 . exon 67079 67333 . - . ID=Physo158638.17;Parent=Physo158638;constitutive=1;rank=17 scaffold_122 . CDS 67787 67951 . - 0 ID=Physo158638;Parent=Physo158638;rank=16 scaffold_122 . CDS 67985 68190 . - 0 ID=Physo158638;Parent=Physo158638;rank=15 scaffold_122 . CDS 68483 68508 . - 0 ID=Physo158638;Parent=Physo158638;rank=14 scaffold_122 . CDS 68541 68644 . - 0 ID=Physo158638;Parent=Physo158638;rank=13 scaffold_122 . CDS 68726 69151 . - 0 ID=Physo158638;Parent=Physo158638;rank=12 scaffold_122 . CDS 69512 69756 . - 0 ID=Physo158638;Parent=Physo158638;rank=11 scaffold_122 . CDS 69811 70145 . - 0 ID=Physo158638;Parent=Physo158638;rank=10 scaffold_122 . CDS 70197 70309 . - 0 ID=Physo158638;Parent=Physo158638;rank=9 scaffold_122 . CDS 70382 70512 . - 0 ID=Physo158638;Parent=Physo158638;rank=8 scaffold_122 . CDS 70639 70847 . - 0 ID=Physo158638;Parent=Physo158638;rank=7 scaffold_122 . CDS 70977 71583 . - 0 ID=Physo158638;Parent=Physo158638;rank=6 scaffold_122 . CDS 71620 73025 . - 0 ID=Physo158638;Parent=Physo158638;rank=5 scaffold_122 . CDS 73047 73454 . - 0 ID=Physo158638;Parent=Physo158638;rank=4 scaffold_122 . CDS 73530 73659 . - 0 ID=Physo158638;Parent=Physo158638;rank=3 scaffold_122 . CDS 73825 74831 . - 0 ID=Physo158638;Parent=Physo158638;rank=2 scaffold_122 . CDS 74940 75952 . - 0 ID=Physo158638;Parent=Physo158638;rank=1 scaffold_122 ensembl protein_coding_gene 77013 79857 . + . ID=Physo142798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220025;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 77013 79857 . + . ID=Physo142798;Parent=Physo142798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 77013 77389 . + 0 ID=Physo142798;Parent=Physo142798;rank=1 scaffold_122 . exon 77013 77389 . + . ID=Physo142798.1;Parent=Physo142798;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . CDS 77742 77938 . + 0 ID=Physo142798;Parent=Physo142798;rank=2 scaffold_122 . CDS 78102 78164 . + 0 ID=Physo142798;Parent=Physo142798;rank=3 scaffold_122 . CDS 78373 78410 . + 0 ID=Physo142798;Parent=Physo142798;rank=4 scaffold_122 . CDS 78472 78576 . + 0 ID=Physo142798;Parent=Physo142798;rank=5 scaffold_122 . CDS 78818 79292 . + 0 ID=Physo142798;Parent=Physo142798;rank=6 scaffold_122 . CDS 79355 79857 . + 0 ID=Physo142798;Parent=Physo142798;rank=7 scaffold_122 . exon 67787 67951 . - . ID=Physo158638.16;Parent=Physo158638;constitutive=1;rank=16 scaffold_122 . exon 67985 68190 . - . ID=Physo158638.15;Parent=Physo158638;constitutive=1;ensembl_phase=1;rank=15 scaffold_122 . exon 68483 68508 . - . ID=Physo158638.14;Parent=Physo158638;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=14 scaffold_122 . exon 68541 68644 . - . ID=Physo158638.13;Parent=Physo158638;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_122 . exon 68726 69151 . - . ID=Physo158638.12;Parent=Physo158638;constitutive=1;rank=12 scaffold_122 . exon 69512 69756 . - . ID=Physo158638.11;Parent=Physo158638;constitutive=1;ensembl_phase=1;rank=11 scaffold_122 . exon 69811 70145 . - . ID=Physo158638.10;Parent=Physo158638;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_122 . exon 70197 70309 . - . ID=Physo158638.9;Parent=Physo158638;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_122 . exon 70382 70512 . - . ID=Physo158638.8;Parent=Physo158638;constitutive=1;ensembl_phase=1;rank=8 scaffold_122 . exon 70639 70847 . - . ID=Physo158638.7;Parent=Physo158638;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_122 . exon 70977 71583 . - . ID=Physo158638.6;Parent=Physo158638;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_122 . exon 71620 73025 . - . ID=Physo158638.5;Parent=Physo158638;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_122 . exon 73047 73454 . - . ID=Physo158638.4;Parent=Physo158638;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_122 . exon 73530 73659 . - . ID=Physo158638.3;Parent=Physo158638;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_122 . exon 73825 74831 . - . ID=Physo158638.2;Parent=Physo158638;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_122 . exon 74940 75952 . - . ID=Physo158638.1;Parent=Physo158638;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . biological_region 77165 77165 0.999 + . logic_name=eponine scaffold_122 . repeat_region 77176 77229 . ? . description=trf scaffold_122 . repeat_region 77179 77245 . ? . description=trf scaffold_122 . repeat_region 77250 77389 . ? . description=trf scaffold_122 . repeat_region 77250 77413 . ? . description=trf scaffold_122 . biological_region 79646 79648 0.999 + . logic_name=eponine scaffold_122 . repeat_region 81230 81243 . ? . description=dust scaffold_122 . biological_region 82630 82633 0.999 + . logic_name=eponine scaffold_122 . biological_region 82757 82758 0.999 - . logic_name=eponine scaffold_122 . repeat_region 83553 83586 . ? . description=trf scaffold_122 . biological_region 84131 84132 0.999 - . logic_name=eponine scaffold_122 . exon 77742 77938 . + . ID=Physo142798.2;Parent=Physo142798;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_122 . exon 78102 78164 . + . ID=Physo142798.3;Parent=Physo142798;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_122 . exon 78373 78410 . + . ID=Physo142798.4;Parent=Physo142798;constitutive=1;ensembl_phase=1;rank=4 scaffold_122 . exon 78472 78576 . + . ID=Physo142798.5;Parent=Physo142798;constitutive=1;rank=5 scaffold_122 . exon 78818 79292 . + . ID=Physo142798.6;Parent=Physo142798;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_122 . exon 79355 79857 . + . ID=Physo142798.7;Parent=Physo142798;constitutive=1;ensembl_phase=1;rank=7 scaffold_122 ensembl protein_coding_gene 81608 83767 . + . ID=Physo142799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220026;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 81608 83767 . + . ID=Physo142799;Parent=Physo142799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 81608 83767 . + 0 ID=Physo142799;Parent=Physo142799;rank=1 scaffold_122 . exon 81608 83767 . + . ID=Physo142799.1;Parent=Physo142799;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 85637 87194 . + . ID=Physo142800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220027;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 85637 87194 . + . ID=Physo142800;Parent=Physo142800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 85637 86793 . + 0 ID=Physo142800;Parent=Physo142800;rank=1 scaffold_122 . exon 85637 86793 . + . ID=Physo142800.1;Parent=Physo142800;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . CDS 86837 87194 . + 0 ID=Physo142800;Parent=Physo142800;rank=2 scaffold_122 . exon 86837 87194 . + . ID=Physo142800.2;Parent=Physo142800;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 ensembl protein_coding_gene 88880 90458 . + . ID=Physo142801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220028;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 88880 90458 . + . ID=Physo142801;Parent=Physo142801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 88880 90436 . + 0 ID=Physo142801;Parent=Physo142801;rank=1 scaffold_122 . exon 88880 90458 . + . ID=Physo142801.1;Parent=Physo142801;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_122 ensembl protein_coding_gene 90694 91639 . + . ID=Physo142802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220029;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 90694 91639 . + . ID=Physo142802;Parent=Physo142802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 90694 90928 . + 0 ID=Physo142802;Parent=Physo142802;rank=1 scaffold_122 . exon 90694 90928 . + . ID=Physo142802.1;Parent=Physo142802;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 . CDS 91023 91271 . + 0 ID=Physo142802;Parent=Physo142802;rank=2 scaffold_122 . exon 91023 91271 . + . ID=Physo142802.2;Parent=Physo142802;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_122 . CDS 91341 91442 . + 0 ID=Physo142802;Parent=Physo142802;rank=3 scaffold_122 . exon 91341 91442 . + . ID=Physo142802.3;Parent=Physo142802;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_122 . CDS 91521 91639 . + 0 ID=Physo142802;Parent=Physo142802;rank=4 scaffold_122 . exon 91521 91639 . + . ID=Physo142802.4;Parent=Physo142802;constitutive=1;ensembl_phase=1;rank=4 scaffold_122 ensembl protein_coding_gene 91850 92340 . - . ID=Physo142803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220030;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 91850 92340 . - . ID=Physo142803;Parent=Physo142803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 91850 91991 . - 0 ID=Physo142803;Parent=Physo142803;rank=2 scaffold_122 . exon 91850 91991 . - . ID=Physo142803.2;Parent=Physo142803;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 92018 92340 . - 0 ID=Physo142803;Parent=Physo142803;rank=1 scaffold_122 . exon 92018 92340 . - . ID=Physo142803.1;Parent=Physo142803;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 ensembl protein_coding_gene 92767 94092 . - . ID=Physo142804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220031;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 92767 94092 . - . ID=Physo142804;Parent=Physo142804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 92767 93339 . - 0 ID=Physo142804;Parent=Physo142804;rank=5 scaffold_122 . exon 92767 93339 . - . ID=Physo142804.5;Parent=Physo142804;constitutive=1;rank=5 scaffold_122 . CDS 93426 93510 . - 0 ID=Physo142804;Parent=Physo142804;rank=4 scaffold_122 . exon 93426 93510 . - . ID=Physo142804.4;Parent=Physo142804;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 93587 93681 . - 0 ID=Physo142804;Parent=Physo142804;rank=3 scaffold_122 . exon 93587 93681 . - . ID=Physo142804.3;Parent=Physo142804;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_122 . CDS 93772 93904 . - 0 ID=Physo142804;Parent=Physo142804;rank=2 scaffold_122 . exon 93772 93904 . - . ID=Physo142804.2;Parent=Physo142804;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 93980 94059 . - 0 ID=Physo142804;Parent=Physo142804;rank=1 scaffold_122 . exon 93980 94092 . - . ID=Physo142804.1;Parent=Physo142804;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_122 ensembl protein_coding_gene 95293 97995 . + . ID=Physo158640;biotype=protein_coding;external_name=C_scaffold_122000015;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 95293 97995 . + . ID=Physo158640;Parent=Physo158640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 95293 95337 . + 0 ID=Physo158640;Parent=Physo158640;rank=1 scaffold_122 . exon 95293 95337 . + . ID=Physo158640.1;Parent=Physo158640;constitutive=1;rank=1 scaffold_122 . CDS 95414 95534 . + 0 ID=Physo158640;Parent=Physo158640;rank=2 scaffold_122 . exon 95414 95534 . + . ID=Physo158640.2;Parent=Physo158640;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_122 . CDS 95606 95780 . + 0 ID=Physo158640;Parent=Physo158640;rank=3 scaffold_122 . exon 95606 95780 . + . ID=Physo158640.3;Parent=Physo158640;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_122 . CDS 95847 95943 . + 0 ID=Physo158640;Parent=Physo158640;rank=4 scaffold_122 . exon 95847 95943 . + . ID=Physo158640.4;Parent=Physo158640;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 96020 96247 . + 0 ID=Physo158640;Parent=Physo158640;rank=5 scaffold_122 . exon 96020 96247 . + . ID=Physo158640.5;Parent=Physo158640;constitutive=1;rank=5 scaffold_122 . CDS 96345 96416 . + 0 ID=Physo158640;Parent=Physo158640;rank=6 scaffold_122 . exon 96345 96416 . + . ID=Physo158640.6;Parent=Physo158640;constitutive=1;rank=6 scaffold_122 . CDS 96535 96949 . + 0 ID=Physo158640;Parent=Physo158640;rank=7 scaffold_122 . CDS 96976 96983 . + 0 ID=Physo158640;Parent=Physo158640;rank=8 scaffold_122 . CDS 97030 97294 . + 0 ID=Physo158640;Parent=Physo158640;rank=9 scaffold_122 . CDS 97538 97635 . + 0 ID=Physo158640;Parent=Physo158640;rank=10 scaffold_122 . CDS 97669 97995 . + 0 ID=Physo158640;Parent=Physo158640;rank=11 scaffold_122 . biological_region 98417 98420 0.999 + . logic_name=eponine scaffold_122 . biological_region 98465 98475 0.999 - . logic_name=eponine scaffold_122 . biological_region 98631 98634 0.999 - . logic_name=eponine scaffold_122 . biological_region 98659 98662 0.999 - . logic_name=eponine scaffold_122 . biological_region 98683 98685 0.999 - . logic_name=eponine scaffold_122 . biological_region 98707 98707 0.999 - . logic_name=eponine scaffold_122 . biological_region 98710 98717 0.999 + . logic_name=eponine scaffold_122 . biological_region 99273 99276 0.999 - . logic_name=eponine scaffold_122 . biological_region 99499 99504 0.999 + . logic_name=eponine scaffold_122 . biological_region 101175 101178 0.999 - . logic_name=eponine scaffold_122 . biological_region 101255 101257 0.999 - . logic_name=eponine scaffold_122 . repeat_region 101929 101936 . ? . description=dust scaffold_122 . repeat_region 101945 101962 . ? . description=dust scaffold_122 . repeat_region 102121 102188 . ? . description=trf scaffold_122 . repeat_region 102768 102775 . ? . description=dust scaffold_122 . repeat_region 102805 102812 . ? . description=dust scaffold_122 . repeat_region 104279 104509 . ? . description=trf scaffold_122 . repeat_region 104501 104519 . ? . description=dust scaffold_122 ensembl protein_coding_gene 100111 101885 . + . ID=Physo142807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220034;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 100111 101885 . + . ID=Physo142807;Parent=Physo142807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 100111 100251 . + 0 ID=Physo142807;Parent=Physo142807;rank=1 scaffold_122 . exon 100111 100251 . + . ID=Physo142807.1;Parent=Physo142807;constitutive=1;rank=1 scaffold_122 . CDS 100707 100769 . + 0 ID=Physo142807;Parent=Physo142807;rank=2 scaffold_122 . exon 100707 100769 . + . ID=Physo142807.2;Parent=Physo142807;constitutive=1;rank=2 scaffold_122 . CDS 100857 101885 . + 0 ID=Physo142807;Parent=Physo142807;rank=3 scaffold_122 . exon 100857 101885 . + . ID=Physo142807.3;Parent=Physo142807;constitutive=1;rank=3 scaffold_122 ensembl protein_coding_gene 102098 102427 . - . ID=Physo142808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220035;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 102098 102427 . - . ID=Physo142808;Parent=Physo142808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 102098 102427 . - 0 ID=Physo142808;Parent=Physo142808;rank=1 scaffold_122 . exon 102098 102427 . - . ID=Physo142808.1;Parent=Physo142808;constitutive=1;rank=1 scaffold_122 ensembl pseudogene 104022 104990 . - . ID=Physo142809;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_1220036;logic_name=jgi_physo1_1 scaffold_122 ensembl pseudogene 104022 104990 . - . ID=Physo142809;Parent=Physo142809;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_122 . exon 104022 104990 . - . ID=Physo142809.1;Parent=Physo142809;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_122 . exon 96535 96949 . + . ID=Physo158640.7;Parent=Physo158640;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_122 . exon 96976 96983 . + . ID=Physo158640.8;Parent=Physo158640;constitutive=1;ensembl_phase=1;rank=8 scaffold_122 . exon 97030 97294 . + . ID=Physo158640.9;Parent=Physo158640;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_122 . exon 97538 97635 . + . ID=Physo158640.10;Parent=Physo158640;constitutive=1;ensembl_phase=1;rank=10 scaffold_122 . exon 97669 97995 . + . ID=Physo158640.11;Parent=Physo158640;constitutive=1;rank=11 scaffold_122 ensembl protein_coding_gene 98391 99865 . + . ID=Physo158641;biotype=protein_coding;external_name=C_scaffold_122000016;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 98391 99865 . + . ID=Physo158641;Parent=Physo158641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 98391 99023 . + 0 ID=Physo158641;Parent=Physo158641;rank=1 scaffold_122 . exon 98391 99023 . + . ID=Physo158641.1;Parent=Physo158641;constitutive=1;rank=1 scaffold_122 . CDS 99107 99865 . + 0 ID=Physo158641;Parent=Physo158641;rank=2 scaffold_122 . exon 99107 99865 . + . ID=Physo158641.2;Parent=Physo158641;constitutive=1;rank=2 scaffold_122 ensembl protein_coding_gene 106414 107352 . + . ID=Physo142810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220037;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 106414 107352 . + . ID=Physo142810;Parent=Physo142810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 106414 107352 . + 0 ID=Physo142810;Parent=Physo142810;rank=1 scaffold_122 . exon 106414 107352 . + . ID=Physo142810.1;Parent=Physo142810;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 107890 108906 . + . ID=Physo142811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220038;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 107890 108906 . + . ID=Physo142811;Parent=Physo142811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 107890 108906 . + 0 ID=Physo142811;Parent=Physo142811;rank=1 scaffold_122 . exon 107890 108906 . + . ID=Physo142811.1;Parent=Physo142811;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 109186 110234 . + . ID=Physo142812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220039;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 109186 110234 . + . ID=Physo142812;Parent=Physo142812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 109186 109222 . + 0 ID=Physo142812;Parent=Physo142812;rank=1 scaffold_122 . exon 109186 109222 . + . ID=Physo142812.1;Parent=Physo142812;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 . CDS 109296 109321 . + 0 ID=Physo142812;Parent=Physo142812;rank=2 scaffold_122 . exon 109296 109321 . + . ID=Physo142812.2;Parent=Physo142812;constitutive=1;ensembl_phase=1;rank=2 scaffold_122 . CDS 109353 110234 . + 0 ID=Physo142812;Parent=Physo142812;rank=3 scaffold_122 . exon 109353 110234 . + . ID=Physo142812.3;Parent=Physo142812;constitutive=1;rank=3 scaffold_122 ensembl protein_coding_gene 111117 114922 . - . ID=Physo142813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220040;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 111117 114922 . - . ID=Physo142813;Parent=Physo142813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 111117 112192 . - 0 ID=Physo142813;Parent=Physo142813;rank=4 scaffold_122 . exon 111117 112192 . - . ID=Physo142813.4;Parent=Physo142813;constitutive=1;ensembl_phase=1;rank=4 scaffold_122 . CDS 112228 112309 . - 0 ID=Physo142813;Parent=Physo142813;rank=3 scaffold_122 . exon 112228 112309 . - . ID=Physo142813.3;Parent=Physo142813;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_122 . CDS 112828 112981 . - 0 ID=Physo142813;Parent=Physo142813;rank=2 scaffold_122 . exon 112828 112981 . - . ID=Physo142813.2;Parent=Physo142813;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 113055 114922 . - 0 ID=Physo142813;Parent=Physo142813;rank=1 scaffold_122 . exon 113055 114922 . - . ID=Physo142813.1;Parent=Physo142813;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 ensembl protein_coding_gene 115168 117104 . - . ID=Physo158645;biotype=protein_coding;external_name=C_scaffold_122000020;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 115168 117104 . - . ID=Physo158645;Parent=Physo158645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 115168 115349 . - 0 ID=Physo158645;Parent=Physo158645;rank=6 scaffold_122 . exon 115168 115349 . - . ID=Physo158645.6;Parent=Physo158645;constitutive=1;ensembl_phase=1;rank=6 scaffold_122 . CDS 115414 115539 . - 0 ID=Physo158645;Parent=Physo158645;rank=5 scaffold_122 . exon 115414 115539 . - . ID=Physo158645.5;Parent=Physo158645;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_122 . CDS 115601 116163 . - 0 ID=Physo158645;Parent=Physo158645;rank=4 scaffold_122 . exon 115601 116163 . - . ID=Physo158645.4;Parent=Physo158645;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 116209 116376 . - 0 ID=Physo158645;Parent=Physo158645;rank=3 scaffold_122 . CDS 116425 116788 . - 0 ID=Physo158645;Parent=Physo158645;rank=2 scaffold_122 . CDS 117026 117104 . - 0 ID=Physo158645;Parent=Physo158645;rank=1 scaffold_122 . repeat_region 117224 117277 . ? . description=dust scaffold_122 . biological_region 118013 118014 0.999 - . logic_name=eponine scaffold_122 . biological_region 118589 118593 0.999 + . logic_name=eponine scaffold_122 . repeat_region 122385 122405 . ? . description=trf scaffold_122 . biological_region 123027 123031 0.999 + . logic_name=eponine scaffold_122 . biological_region 123761 123761 0.999 + . logic_name=eponine scaffold_122 . biological_region 124082 124086 0.999 + . logic_name=eponine scaffold_122 . biological_region 124156 124156 0.999 - . logic_name=eponine scaffold_122 . biological_region 125018 125018 0.999 + . logic_name=eponine scaffold_122 ensembl protein_coding_gene 118140 118945 . + . ID=Physo142815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220042;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 118140 118945 . + . ID=Physo142815;Parent=Physo142815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 118140 118892 . + 0 ID=Physo142815;Parent=Physo142815;rank=1 scaffold_122 . exon 118140 118945 . + . ID=Physo142815.1;Parent=Physo142815;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_122 ensembl protein_coding_gene 121924 122717 . - . ID=Physo142816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220043;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 121924 122717 . - . ID=Physo142816;Parent=Physo142816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 121924 122073 . - 0 ID=Physo142816;Parent=Physo142816;rank=5 scaffold_122 . exon 121924 122073 . - . ID=Physo142816.5;Parent=Physo142816;constitutive=1;rank=5 scaffold_122 . CDS 122150 122185 . - 0 ID=Physo142816;Parent=Physo142816;rank=4 scaffold_122 . exon 122150 122185 . - . ID=Physo142816.4;Parent=Physo142816;constitutive=1;rank=4 scaffold_122 . CDS 122264 122372 . - 0 ID=Physo142816;Parent=Physo142816;rank=3 scaffold_122 . exon 122264 122372 . - . ID=Physo142816.3;Parent=Physo142816;constitutive=1;ensembl_phase=2;rank=3 scaffold_122 . CDS 122457 122635 . - 0 ID=Physo142816;Parent=Physo142816;rank=2 scaffold_122 . exon 122457 122635 . - . ID=Physo142816.2;Parent=Physo142816;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_122 . CDS 122715 122717 . - 0 ID=Physo142816;Parent=Physo142816;rank=1 scaffold_122 . exon 122715 122717 . - . ID=Physo142816.1;Parent=Physo142816;constitutive=1;rank=1 scaffold_122 . exon 116209 116376 . - . ID=Physo158645.3;Parent=Physo158645;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_122 . exon 116425 116788 . - . ID=Physo158645.2;Parent=Physo158645;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_122 . exon 117026 117104 . - . ID=Physo158645.1;Parent=Physo158645;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 ensembl protein_coding_gene 123038 123430 . + . ID=Physo158648;biotype=protein_coding;external_name=C_scaffold_122000023;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 123038 123430 . + . ID=Physo158648;Parent=Physo158648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 123038 123430 . + 0 ID=Physo158648;Parent=Physo158648;rank=1 scaffold_122 . exon 123038 123430 . + . ID=Physo158648.1;Parent=Physo158648;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 123483 126363 . - . ID=Physo158649;biotype=protein_coding;external_name=C_scaffold_122000024;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 123483 126363 . - . ID=Physo158649;Parent=Physo158649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 123483 123645 . - 0 ID=Physo158649;Parent=Physo158649;rank=4 scaffold_122 . exon 123483 123645 . - . ID=Physo158649.4;Parent=Physo158649;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 123685 124268 . - 0 ID=Physo158649;Parent=Physo158649;rank=3 scaffold_122 . exon 123685 124268 . - . ID=Physo158649.3;Parent=Physo158649;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_122 . CDS 124296 124653 . - 0 ID=Physo158649;Parent=Physo158649;rank=2 scaffold_122 . exon 124296 124653 . - . ID=Physo158649.2;Parent=Physo158649;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 124856 126363 . - 0 ID=Physo158649;Parent=Physo158649;rank=1 scaffold_122 . exon 124856 126363 . - . ID=Physo158649.1;Parent=Physo158649;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 ensembl protein_coding_gene 128287 129521 . + . ID=Physo142820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220047;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 128287 129521 . + . ID=Physo142820;Parent=Physo142820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 128287 128506 . + 0 ID=Physo142820;Parent=Physo142820;rank=1 scaffold_122 . exon 128287 128506 . + . ID=Physo142820.1;Parent=Physo142820;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 . CDS 128572 129521 . + 0 ID=Physo142820;Parent=Physo142820;rank=2 scaffold_122 . exon 128572 129521 . + . ID=Physo142820.2;Parent=Physo142820;constitutive=1;ensembl_phase=1;rank=2 scaffold_122 ensembl protein_coding_gene 131266 131748 . + . ID=Physo142821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220048;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 131266 131748 . + . ID=Physo142821;Parent=Physo142821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 131266 131748 . + 0 ID=Physo142821;Parent=Physo142821;rank=1 scaffold_122 . exon 131266 131748 . + . ID=Physo142821.1;Parent=Physo142821;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 132595 133263 . + . ID=Physo142822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220049;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 132595 133263 . + . ID=Physo142822;Parent=Physo142822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 132595 133185 . + 0 ID=Physo142822;Parent=Physo142822;rank=1 scaffold_122 . exon 132595 133263 . + . ID=Physo142822.1;Parent=Physo142822;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_122 ensembl protein_coding_gene 133307 138450 . - . ID=Physo142823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220050;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 133307 138450 . - . ID=Physo142823;Parent=Physo142823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 133307 136511 . - 0 ID=Physo142823;Parent=Physo142823;rank=2 scaffold_122 . exon 133307 136511 . - . ID=Physo142823.2;Parent=Physo142823;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 136685 138450 . - 0 ID=Physo142823;Parent=Physo142823;rank=1 scaffold_122 . repeat_region 138228 138253 . ? . description=trf scaffold_122 . biological_region 138924 138927 0.999 - . logic_name=eponine scaffold_122 . repeat_region 139867 139919 . ? . description=dust scaffold_122 . repeat_region 139893 139919 . ? . description=trf scaffold_122 . biological_region 141234 141237 0.999 + . logic_name=eponine scaffold_122 . biological_region 141304 141309 0.999 - . logic_name=eponine scaffold_122 . biological_region 141380 141384 0.999 + . logic_name=eponine scaffold_122 . biological_region 141533 141537 0.999 - . logic_name=eponine scaffold_122 . biological_region 141971 141976 0.999 + . logic_name=eponine scaffold_122 . biological_region 142068 142074 0.999 - . logic_name=eponine scaffold_122 . exon 136685 138450 . - . ID=Physo142823.1;Parent=Physo142823;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 ensembl protein_coding_gene 138999 140048 . + . ID=Physo142824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220051;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 138999 140048 . + . ID=Physo142824;Parent=Physo142824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 138999 139163 . + 0 ID=Physo142824;Parent=Physo142824;rank=1 scaffold_122 . exon 138999 139163 . + . ID=Physo142824.1;Parent=Physo142824;constitutive=1;rank=1 scaffold_122 . CDS 139239 139741 . + 0 ID=Physo142824;Parent=Physo142824;rank=2 scaffold_122 . exon 139239 139741 . + . ID=Physo142824.2;Parent=Physo142824;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_122 . CDS 139811 140048 . + 0 ID=Physo142824;Parent=Physo142824;rank=3 scaffold_122 . exon 139811 140048 . + . ID=Physo142824.3;Parent=Physo142824;constitutive=1;ensembl_phase=2;rank=3 scaffold_122 ensembl protein_coding_gene 140195 141656 . - . ID=Physo142825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220052;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 140195 141656 . - . ID=Physo142825;Parent=Physo142825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 140195 140655 . - 0 ID=Physo142825;Parent=Physo142825;rank=3 scaffold_122 . exon 140195 140655 . - . ID=Physo142825.3;Parent=Physo142825;constitutive=1;ensembl_phase=1;rank=3 scaffold_122 . CDS 140729 140789 . - 0 ID=Physo142825;Parent=Physo142825;rank=2 scaffold_122 . exon 140729 140789 . - . ID=Physo142825.2;Parent=Physo142825;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_122 . CDS 140856 141656 . - 0 ID=Physo142825;Parent=Physo142825;rank=1 scaffold_122 . exon 140856 141656 . - . ID=Physo142825.1;Parent=Physo142825;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 141946 144558 . + . ID=Physo142826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220053;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 141946 144558 . + . ID=Physo142826;Parent=Physo142826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 141946 142071 . + 0 ID=Physo142826;Parent=Physo142826;rank=1 scaffold_122 . exon 141946 142071 . + . ID=Physo142826.1;Parent=Physo142826;constitutive=1;rank=1 scaffold_122 . CDS 142138 142189 . + 0 ID=Physo142826;Parent=Physo142826;rank=2 scaffold_122 . exon 142138 142189 . + . ID=Physo142826.2;Parent=Physo142826;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_122 . CDS 142268 142407 . + 0 ID=Physo142826;Parent=Physo142826;rank=3 scaffold_122 . exon 142268 142407 . + . ID=Physo142826.3;Parent=Physo142826;constitutive=1;ensembl_phase=1;rank=3 scaffold_122 . CDS 142478 142656 . + 0 ID=Physo142826;Parent=Physo142826;rank=4 scaffold_122 . exon 142478 142656 . + . ID=Physo142826.4;Parent=Physo142826;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_122 . CDS 142730 142856 . + 0 ID=Physo142826;Parent=Physo142826;rank=5 scaffold_122 . exon 142730 142856 . + . ID=Physo142826.5;Parent=Physo142826;constitutive=1;ensembl_phase=2;rank=5 scaffold_122 . CDS 142921 144558 . + 0 ID=Physo142826;Parent=Physo142826;rank=6 scaffold_122 . exon 142921 144558 . + . ID=Physo142826.6;Parent=Physo142826;constitutive=1;rank=6 scaffold_122 ensembl protein_coding_gene 144659 145303 . - . ID=Physo142827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220054;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 144659 145303 . - . ID=Physo142827;Parent=Physo142827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 144659 145303 . - 0 ID=Physo142827;Parent=Physo142827;rank=1 scaffold_122 . exon 144659 145303 . - . ID=Physo142827.1;Parent=Physo142827;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 145587 147503 . - . ID=Physo142828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220055;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 145587 147503 . - . ID=Physo142828;Parent=Physo142828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 145587 147503 . - 0 ID=Physo142828;Parent=Physo142828;rank=1 scaffold_122 . exon 145587 147503 . - . ID=Physo142828.1;Parent=Physo142828;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 148599 153836 . - . ID=Physo158653;biotype=protein_coding;external_name=C_scaffold_122000028;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 148599 153836 . - . ID=Physo158653;Parent=Physo158653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 148599 148743 . - 0 ID=Physo158653;Parent=Physo158653;rank=12 scaffold_122 . exon 148599 148743 . - . ID=Physo158653.12;Parent=Physo158653;constitutive=1;ensembl_phase=2;rank=12 scaffold_122 . CDS 148923 149152 . - 0 ID=Physo158653;Parent=Physo158653;rank=11 scaffold_122 . exon 148923 149152 . - . ID=Physo158653.11;Parent=Physo158653;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_122 . CDS 149263 149464 . - 0 ID=Physo158653;Parent=Physo158653;rank=10 scaffold_122 . exon 149263 149464 . - . ID=Physo158653.10;Parent=Physo158653;constitutive=1;ensembl_phase=2;rank=10 scaffold_122 . CDS 149501 149725 . - 0 ID=Physo158653;Parent=Physo158653;rank=9 scaffold_122 . exon 149501 149725 . - . ID=Physo158653.9;Parent=Physo158653;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_122 . CDS 149803 149929 . - 0 ID=Physo158653;Parent=Physo158653;rank=8 scaffold_122 . exon 149803 149929 . - . ID=Physo158653.8;Parent=Physo158653;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_122 . CDS 150002 150419 . - 0 ID=Physo158653;Parent=Physo158653;rank=7 scaffold_122 . exon 150002 150419 . - . ID=Physo158653.7;Parent=Physo158653;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_122 . CDS 150468 150879 . - 0 ID=Physo158653;Parent=Physo158653;rank=6 scaffold_122 . exon 150468 150879 . - . ID=Physo158653.6;Parent=Physo158653;constitutive=1;ensembl_phase=2;rank=6 scaffold_122 . CDS 150907 151158 . - 0 ID=Physo158653;Parent=Physo158653;rank=5 scaffold_122 . exon 150907 151158 . - . ID=Physo158653.5;Parent=Physo158653;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_122 . CDS 151370 151476 . - 0 ID=Physo158653;Parent=Physo158653;rank=4 scaffold_122 . exon 151370 151476 . - . ID=Physo158653.4;Parent=Physo158653;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_122 . CDS 151854 153161 . - 0 ID=Physo158653;Parent=Physo158653;rank=3 scaffold_122 . exon 151854 153161 . - . ID=Physo158653.3;Parent=Physo158653;constitutive=1;rank=3 scaffold_122 . CDS 153249 153523 . - 0 ID=Physo158653;Parent=Physo158653;rank=2 scaffold_122 . exon 153249 153523 . - . ID=Physo158653.2;Parent=Physo158653;constitutive=1;ensembl_phase=1;rank=2 scaffold_122 . CDS 153578 153836 . - 0 ID=Physo158653;Parent=Physo158653;rank=1 scaffold_122 . exon 153578 153836 . - . ID=Physo158653.1;Parent=Physo158653;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 . biological_region 154488 154492 0.999 - . logic_name=eponine scaffold_122 . repeat_region 155941 155950 . ? . description=dust scaffold_122 . biological_region 156187 156190 0.999 - . logic_name=eponine scaffold_122 . biological_region 158170 158176 0.999 + . logic_name=eponine scaffold_122 . biological_region 158251 158253 0.999 - . logic_name=eponine scaffold_122 . repeat_region 158827 158845 . ? . description=dust scaffold_122 . repeat_region 161429 161445 . ? . description=dust scaffold_122 . biological_region 161560 161566 0.999 + . logic_name=eponine scaffold_122 . biological_region 161632 161635 0.999 - . logic_name=eponine scaffold_122 . biological_region 161876 161881 0.999 - . logic_name=eponine scaffold_122 . biological_region 163005 163007 0.999 + . logic_name=eponine scaffold_122 ensembl protein_coding_gene 159181 160569 . + . ID=Physo109510;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1220004;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 159181 160569 . + . ID=Physo109510;Parent=Physo109510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 159181 159216 . + 0 ID=Physo109510;Parent=Physo109510;rank=1 scaffold_122 . exon 159181 159216 . + . ID=Physo109510.1;Parent=Physo109510;constitutive=1;rank=1 scaffold_122 . CDS 159243 159359 . + 0 ID=Physo109510;Parent=Physo109510;rank=2 scaffold_122 . exon 159243 159359 . + . ID=Physo109510.2;Parent=Physo109510;constitutive=1;rank=2 scaffold_122 . CDS 159428 160390 . + 0 ID=Physo109510;Parent=Physo109510;rank=3 scaffold_122 . exon 159428 160390 . + . ID=Physo109510.3;Parent=Physo109510;constitutive=1;rank=3 scaffold_122 . CDS 160462 160569 . + 0 ID=Physo109510;Parent=Physo109510;rank=4 scaffold_122 . exon 160462 160569 . + . ID=Physo109510.4;Parent=Physo109510;constitutive=1;rank=4 scaffold_122 ensembl protein_coding_gene 154864 156203 . - . ID=Physo142830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220057;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 154864 156203 . - . ID=Physo142830;Parent=Physo142830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . exon 154864 155889 . - . ID=Physo142830.2;Parent=Physo142830;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_122 . CDS 154939 155889 . - 0 ID=Physo142830;Parent=Physo142830;rank=2 scaffold_122 . CDS 155973 156203 . - 0 ID=Physo142830;Parent=Physo142830;rank=1 scaffold_122 . exon 155973 156203 . - . ID=Physo142830.1;Parent=Physo142830;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 156396 158296 . - . ID=Physo142831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220058;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 156396 158296 . - . ID=Physo142831;Parent=Physo142831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . exon 156396 158054 . - . ID=Physo142831.2;Parent=Physo142831;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_122 . CDS 156436 158054 . - 0 ID=Physo142831;Parent=Physo142831;rank=2 scaffold_122 . CDS 158137 158296 . - 0 ID=Physo142831;Parent=Physo142831;rank=1 scaffold_122 . exon 158137 158296 . - . ID=Physo142831.1;Parent=Physo142831;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 ensembl protein_coding_gene 160798 163780 . - . ID=Physo142833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220060;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 160798 163780 . - . ID=Physo142833;Parent=Physo142833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 160798 161070 . - 0 ID=Physo142833;Parent=Physo142833;rank=5 scaffold_122 . exon 160798 161070 . - . ID=Physo142833.5;Parent=Physo142833;constitutive=1;rank=5 scaffold_122 . CDS 161146 161413 . - 0 ID=Physo142833;Parent=Physo142833;rank=4 scaffold_122 . exon 161146 161413 . - . ID=Physo142833.4;Parent=Physo142833;constitutive=1;ensembl_phase=2;rank=4 scaffold_122 . CDS 161507 161982 . - 0 ID=Physo142833;Parent=Physo142833;rank=3 scaffold_122 . exon 161507 161982 . - . ID=Physo142833.3;Parent=Physo142833;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_122 . CDS 162070 162154 . - 0 ID=Physo142833;Parent=Physo142833;rank=2 scaffold_122 . exon 162070 162154 . - . ID=Physo142833.2;Parent=Physo142833;constitutive=1;ensembl_phase=2;rank=2 scaffold_122 . CDS 162330 163780 . - 0 ID=Physo142833;Parent=Physo142833;rank=1 scaffold_122 . exon 162330 163780 . - . ID=Physo142833.1;Parent=Physo142833;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . repeat_region 170857 170894 . ? . description=trf scaffold_122 . repeat_region 171309 171332 . ? . description=trf scaffold_122 . repeat_region 171498 171517 . ? . description=trf scaffold_122 ensembl protein_coding_gene 168228 168513 . + . ID=Physo123261;biotype=protein_coding;external_name=estExt_Genewise1.C_1220066;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 168228 168513 . + . ID=Physo123261;Parent=Physo123261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 168228 168254 . + 0 ID=Physo123261;Parent=Physo123261;rank=1 scaffold_122 . exon 168228 168254 . + . ID=Physo123261.1;Parent=Physo123261;constitutive=1;rank=1 scaffold_122 . CDS 168319 168513 . + 0 ID=Physo123261;Parent=Physo123261;rank=2 scaffold_122 . exon 168319 168513 . + . ID=Physo123261.2;Parent=Physo123261;constitutive=1;rank=2 scaffold_122 ensembl protein_coding_gene 165554 167423 . - . ID=Physo142834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220061;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 165554 167423 . - . ID=Physo142834;Parent=Physo142834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 165554 165787 . - 0 ID=Physo142834;Parent=Physo142834;rank=3 scaffold_122 . exon 165554 165787 . - . ID=Physo142834.3;Parent=Physo142834;constitutive=1;rank=3 scaffold_122 . CDS 165861 166145 . - 0 ID=Physo142834;Parent=Physo142834;rank=2 scaffold_122 . exon 165861 166145 . - . ID=Physo142834.2;Parent=Physo142834;constitutive=1;rank=2 scaffold_122 . CDS 166209 167423 . - 0 ID=Physo142834;Parent=Physo142834;rank=1 scaffold_122 . exon 166209 167423 . - . ID=Physo142834.1;Parent=Physo142834;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 169932 170690 . + . ID=Physo142835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220062;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 169932 170690 . + . ID=Physo142835;Parent=Physo142835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 169932 170690 . + 0 ID=Physo142835;Parent=Physo142835;rank=1 scaffold_122 . exon 169932 170690 . + . ID=Physo142835.1;Parent=Physo142835;constitutive=1;rank=1 scaffold_122 ensembl protein_coding_gene 170951 174282 . + . ID=Physo142836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220063;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 170951 174282 . + . ID=Physo142836;Parent=Physo142836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . exon 170951 171735 . + . ID=Physo142836.1;Parent=Physo142836;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_122 . CDS 170966 171735 . + 0 ID=Physo142836;Parent=Physo142836;rank=1 scaffold_122 . CDS 172036 172872 . + 0 ID=Physo142836;Parent=Physo142836;rank=2 scaffold_122 . exon 172036 172872 . + . ID=Physo142836.2;Parent=Physo142836;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_122 . CDS 172968 173039 . + 0 ID=Physo142836;Parent=Physo142836;rank=3 scaffold_122 . exon 172968 173039 . + . ID=Physo142836.3;Parent=Physo142836;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_122 . CDS 173208 174128 . + 0 ID=Physo142836;Parent=Physo142836;rank=4 scaffold_122 . exon 173208 174128 . + . ID=Physo142836.4;Parent=Physo142836;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_122 . CDS 174204 174282 . + 0 ID=Physo142836;Parent=Physo142836;rank=5 scaffold_122 . repeat_region 177485 177492 . ? . description=dust scaffold_122 . biological_region 180768 180771 0.999 + . logic_name=eponine scaffold_122 . exon 174204 174282 . + . ID=Physo142836.5;Parent=Physo142836;constitutive=1;ensembl_phase=2;rank=5 scaffold_122 ensembl protein_coding_gene 177518 179395 . + . ID=Physo142837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220064;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 177518 179395 . + . ID=Physo142837;Parent=Physo142837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 177518 178111 . + 0 ID=Physo142837;Parent=Physo142837;rank=1 scaffold_122 . exon 177518 178111 . + . ID=Physo142837.1;Parent=Physo142837;constitutive=1;rank=1 scaffold_122 . CDS 178322 179395 . + 0 ID=Physo142837;Parent=Physo142837;rank=2 scaffold_122 . exon 178322 179395 . + . ID=Physo142837.2;Parent=Physo142837;constitutive=1;rank=2 scaffold_122 . repeat_region 183236 183489 . ? . description=trf scaffold_122 . repeat_region 186127 186152 . ? . description=trf scaffold_122 . repeat_region 186258 186286 . ? . description=trf scaffold_122 . repeat_region 190381 190421 . ? . description=trf scaffold_122 . repeat_region 190666 190701 . ? . description=trf scaffold_122 . repeat_region 191134 191174 . ? . description=trf scaffold_122 . repeat_region 191419 191454 . ? . description=trf scaffold_122 . repeat_region 191877 191917 . ? . description=trf scaffold_122 . repeat_region 192162 192197 . ? . description=trf scaffold_122 . repeat_region 192629 192670 . ? . description=trf scaffold_122 . repeat_region 192632 192673 . ? . description=trf scaffold_122 ensembl tRNA_gene 191065 191135 . + . ID=EPrPSOG00000000097;biotype=tRNA;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_122 ensembl transcript 191065 191135 . + . ID=EPrPSOT00000000097;Parent=EPrPSOG00000000097;biotype=tRNA;logic_name=ncrna_eg scaffold_122 ensembl tRNA_gene 191806 191878 . + . ID=EPrPSOG00000000195;biotype=tRNA;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_122 ensembl transcript 191806 191878 . + . ID=EPrPSOT00000000195;Parent=EPrPSOG00000000195;biotype=tRNA;logic_name=ncrna_eg scaffold_122 . exon 191065 191135 . + . ID=EPrPSOE00000000097;Parent=EPrPSOT00000000097;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_122 . exon 191806 191878 . + . ID=EPrPSOE00000000195;Parent=EPrPSOT00000000195;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_122 ensembl protein_coding_gene 184701 185872 . + . ID=Physo142838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220065;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 184701 185872 . + . ID=Physo142838;Parent=Physo142838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 184701 185378 . + 0 ID=Physo142838;Parent=Physo142838;rank=1 scaffold_122 . exon 184701 185378 . + . ID=Physo142838.1;Parent=Physo142838;constitutive=1;rank=1 scaffold_122 . CDS 185408 185872 . + 0 ID=Physo142838;Parent=Physo142838;rank=2 scaffold_122 . exon 185408 185872 . + . ID=Physo142838.2;Parent=Physo142838;constitutive=1;rank=2 scaffold_122 ensembl protein_coding_gene 188550 190029 . + . ID=Physo142839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1220066;logic_name=jgi_physo1_1 scaffold_122 ensembl transcript 188550 190029 . + . ID=Physo142839;Parent=Physo142839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_122 . CDS 188550 188747 . + 0 ID=Physo142839;Parent=Physo142839;rank=1 scaffold_122 . exon 188550 188747 . + . ID=Physo142839.1;Parent=Physo142839;constitutive=1;rank=1 scaffold_122 . CDS 188782 189057 . + 0 ID=Physo142839;Parent=Physo142839;rank=2 scaffold_122 . exon 188782 189057 . + . ID=Physo142839.2;Parent=Physo142839;constitutive=1;rank=2 scaffold_122 . CDS 189127 189794 . + 0 ID=Physo142839;Parent=Physo142839;rank=3 scaffold_122 . exon 189127 189794 . + . ID=Physo142839.3;Parent=Physo142839;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_122 . CDS 189819 190029 . + 0 ID=Physo142839;Parent=Physo142839;rank=4 scaffold_122 . exon 189819 190029 . + . ID=Physo142839.4;Parent=Physo142839;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_121 1 195907 scaffold_121 . repeat_region 378 1975 . + . description=Polinton-1_PI scaffold_121 . repeat_region 1977 2698 . ? . description=dust scaffold_121 . repeat_region 3258 3307 . ? . description=dust scaffold_121 . repeat_region 3310 4595 . + . description=Polinton-1_PI scaffold_121 . repeat_region 4611 4660 . ? . description=dust scaffold_121 . repeat_region 4661 5465 . + . description=Polinton-1_PI scaffold_121 . repeat_region 5466 5515 . ? . description=dust scaffold_121 . repeat_region 5554 5594 . + . description=SSU-rRNA_Tps scaffold_121 . repeat_region 7439 7639 . ? . description=trf scaffold_121 . repeat_region 7909 9811 . + . description=Polinton-1_PI scaffold_121 ensembl protein_coding_gene 15162 16139 . + . ID=Physo142734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210001;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 15162 16139 . + . ID=Physo142734;Parent=Physo142734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 15162 15171 . + 0 ID=Physo142734;Parent=Physo142734;rank=1 scaffold_121 . exon 15162 15171 . + . ID=Physo142734.1;Parent=Physo142734;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_121 . CDS 15288 15389 . + 0 ID=Physo142734;Parent=Physo142734;rank=2 scaffold_121 . exon 15288 15389 . + . ID=Physo142734.2;Parent=Physo142734;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_121 . CDS 15474 15546 . + 0 ID=Physo142734;Parent=Physo142734;rank=3 scaffold_121 . exon 15474 15546 . + . ID=Physo142734.3;Parent=Physo142734;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_121 . CDS 15652 15979 . + 0 ID=Physo142734;Parent=Physo142734;rank=4 scaffold_121 . exon 15652 15979 . + . ID=Physo142734.4;Parent=Physo142734;constitutive=1;ensembl_phase=2;rank=4 scaffold_121 . CDS 16062 16139 . + 0 ID=Physo142734;Parent=Physo142734;rank=5 scaffold_121 . exon 16062 16139 . + . ID=Physo142734.5;Parent=Physo142734;constitutive=1;rank=5 scaffold_121 ensembl protein_coding_gene 16567 18561 . + . ID=Physo142735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210002;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 16567 18561 . + . ID=Physo142735;Parent=Physo142735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 16567 18561 . + 0 ID=Physo142735;Parent=Physo142735;rank=1 scaffold_121 . exon 16567 18561 . + . ID=Physo142735.1;Parent=Physo142735;constitutive=1;rank=1 scaffold_121 . repeat_region 23743 23808 . ? . description=dust scaffold_121 . repeat_region 23748 23792 . ? . description=trf scaffold_121 . repeat_region 23876 23889 . ? . description=dust scaffold_121 . repeat_region 24533 24582 . ? . description=dust scaffold_121 . biological_region 24652 24654 0.999 + . logic_name=eponine scaffold_121 . biological_region 25406 25409 0.999 + . logic_name=eponine scaffold_121 ensembl protein_coding_gene 28298 30295 . + . ID=Physo142736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210003;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 28298 30295 . + . ID=Physo142736;Parent=Physo142736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 28298 28589 . + 0 ID=Physo142736;Parent=Physo142736;rank=1 scaffold_121 . exon 28298 28589 . + . ID=Physo142736.1;Parent=Physo142736;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_121 . CDS 28882 30123 . + 0 ID=Physo142736;Parent=Physo142736;rank=2 scaffold_121 . exon 28882 30123 . + . ID=Physo142736.2;Parent=Physo142736;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_121 . CDS 30186 30295 . + 0 ID=Physo142736;Parent=Physo142736;rank=3 scaffold_121 . exon 30186 30295 . + . ID=Physo142736.3;Parent=Physo142736;constitutive=1;ensembl_phase=1;rank=3 scaffold_121 ensembl protein_coding_gene 30503 32423 . + . ID=Physo142737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210004;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 30503 32423 . + . ID=Physo142737;Parent=Physo142737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 30503 30553 . + 0 ID=Physo142737;Parent=Physo142737;rank=1 scaffold_121 . exon 30503 30553 . + . ID=Physo142737.1;Parent=Physo142737;constitutive=1;rank=1 scaffold_121 . CDS 30699 31172 . + 0 ID=Physo142737;Parent=Physo142737;rank=2 scaffold_121 . exon 30699 31172 . + . ID=Physo142737.2;Parent=Physo142737;constitutive=1;rank=2 scaffold_121 . CDS 31515 32423 . + 0 ID=Physo142737;Parent=Physo142737;rank=3 scaffold_121 . exon 31515 32423 . + . ID=Physo142737.3;Parent=Physo142737;constitutive=1;rank=3 scaffold_121 ensembl protein_coding_gene 35082 36337 . - . ID=Physo142738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210005;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 35082 36337 . - . ID=Physo142738;Parent=Physo142738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 35082 35469 . - 0 ID=Physo142738;Parent=Physo142738;rank=2 scaffold_121 . exon 35082 35469 . - . ID=Physo142738.2;Parent=Physo142738;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 35781 36337 . - 0 ID=Physo142738;Parent=Physo142738;rank=1 scaffold_121 . exon 35781 36337 . - . ID=Physo142738.1;Parent=Physo142738;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 ensembl protein_coding_gene 36971 38977 . + . ID=Physo142739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210006;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 36971 38977 . + . ID=Physo142739;Parent=Physo142739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 36971 38977 . + 0 ID=Physo142739;Parent=Physo142739;rank=1 scaffold_121 . exon 36971 38977 . + . ID=Physo142739.1;Parent=Physo142739;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 39179 41097 . - . ID=Physo142740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210007;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 39179 41097 . - . ID=Physo142740;Parent=Physo142740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 39179 39225 . - 0 ID=Physo142740;Parent=Physo142740;rank=2 scaffold_121 . exon 39179 39225 . - . ID=Physo142740.2;Parent=Physo142740;constitutive=1;ensembl_phase=1;rank=2 scaffold_121 . CDS 39351 41097 . - 0 ID=Physo142740;Parent=Physo142740;rank=1 scaffold_121 . biological_region 40181 40182 0.999 + . logic_name=eponine scaffold_121 . biological_region 40273 40278 0.999 + . logic_name=eponine scaffold_121 . repeat_region 42001 42032 . ? . description=trf scaffold_121 . biological_region 42008 42011 0.999 - . logic_name=eponine scaffold_121 . repeat_region 45237 45257 . ? . description=trf scaffold_121 . repeat_region 47561 47616 . ? . description=trf scaffold_121 . repeat_region 47561 47616 . ? . description=dust scaffold_121 . exon 39351 41097 . - . ID=Physo142740.1;Parent=Physo142740;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_121 ensembl protein_coding_gene 41913 43898 . + . ID=Physo142741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210008;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 41913 43898 . + . ID=Physo142741;Parent=Physo142741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 41913 43898 . + 0 ID=Physo142741;Parent=Physo142741;rank=1 scaffold_121 . exon 41913 43898 . + . ID=Physo142741.1;Parent=Physo142741;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 51338 52294 . - . ID=Physo142742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210009;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 51338 52294 . - . ID=Physo142742;Parent=Physo142742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 51338 51347 . - 0 ID=Physo142742;Parent=Physo142742;rank=3 scaffold_121 . exon 51338 51347 . - . ID=Physo142742.3;Parent=Physo142742;constitutive=1;ensembl_phase=2;rank=3 scaffold_121 . CDS 51412 52024 . - 0 ID=Physo142742;Parent=Physo142742;rank=2 scaffold_121 . exon 51412 52024 . - . ID=Physo142742.2;Parent=Physo142742;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_121 . CDS 52093 52294 . - 0 ID=Physo142742;Parent=Physo142742;rank=1 scaffold_121 . exon 52093 52294 . - . ID=Physo142742.1;Parent=Physo142742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_121 ensembl protein_coding_gene 52888 58623 . + . ID=Physo142743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210010;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 52888 58623 . + . ID=Physo142743;Parent=Physo142743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 52888 52925 . + 0 ID=Physo142743;Parent=Physo142743;rank=1 scaffold_121 . exon 52888 52925 . + . ID=Physo142743.1;Parent=Physo142743;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . CDS 52946 53783 . + 0 ID=Physo142743;Parent=Physo142743;rank=2 scaffold_121 . exon 52946 53783 . + . ID=Physo142743.2;Parent=Physo142743;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 54062 56272 . + 0 ID=Physo142743;Parent=Physo142743;rank=3 scaffold_121 . exon 54062 56272 . + . ID=Physo142743.3;Parent=Physo142743;constitutive=1;rank=3 scaffold_121 . CDS 56643 56690 . + 0 ID=Physo142743;Parent=Physo142743;rank=4 scaffold_121 . exon 56643 56690 . + . ID=Physo142743.4;Parent=Physo142743;constitutive=1;rank=4 scaffold_121 . CDS 56771 57374 . + 0 ID=Physo142743;Parent=Physo142743;rank=5 scaffold_121 . exon 56771 57374 . + . ID=Physo142743.5;Parent=Physo142743;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_121 . CDS 57449 58623 . + 0 ID=Physo142743;Parent=Physo142743;rank=6 scaffold_121 . exon 57449 58623 . + . ID=Physo142743.6;Parent=Physo142743;constitutive=1;ensembl_phase=1;rank=6 scaffold_121 . repeat_region 59148 59197 . ? . description=dust scaffold_121 . repeat_region 59538 59571 . ? . description=trf scaffold_121 . repeat_region 61550 61675 . ? . description=trf scaffold_121 . biological_region 62174 62178 0.999 - . logic_name=eponine scaffold_121 . biological_region 62955 62955 0.999 - . logic_name=eponine scaffold_121 . biological_region 63112 63118 0.999 + . logic_name=eponine scaffold_121 . biological_region 63133 63141 0.999 - . logic_name=eponine scaffold_121 . repeat_region 63354 63382 . ? . description=trf scaffold_121 . repeat_region 63391 63423 . ? . description=trf scaffold_121 . repeat_region 64029 64060 . ? . description=trf scaffold_121 . biological_region 66279 66288 0.999 - . logic_name=eponine scaffold_121 . biological_region 67686 67690 0.999 + . logic_name=eponine scaffold_121 . biological_region 67732 67735 0.999 + . logic_name=eponine scaffold_121 . biological_region 67772 67778 0.999 - . logic_name=eponine scaffold_121 . biological_region 67801 67806 0.999 - . logic_name=eponine scaffold_121 . repeat_region 67911 67975 . ? . description=trf scaffold_121 . biological_region 68043 68044 0.999 + . logic_name=eponine scaffold_121 . biological_region 68151 68151 0.999 - . logic_name=eponine scaffold_121 ensembl protein_coding_gene 67676 71270 . + . ID=Physo109505;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1210001;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 67676 71270 . + . ID=Physo109505;Parent=Physo109505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 67676 67896 . + 0 ID=Physo109505;Parent=Physo109505;rank=1 scaffold_121 . exon 67676 67896 . + . ID=Physo109505.1;Parent=Physo109505;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . CDS 67995 68097 . + 0 ID=Physo109505;Parent=Physo109505;rank=2 scaffold_121 . exon 67995 68097 . + . ID=Physo109505.2;Parent=Physo109505;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 68140 68315 . + 0 ID=Physo109505;Parent=Physo109505;rank=3 scaffold_121 . exon 68140 68315 . + . ID=Physo109505.3;Parent=Physo109505;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_121 . CDS 68438 70010 . + 0 ID=Physo109505;Parent=Physo109505;rank=4 scaffold_121 . exon 68438 70010 . + . ID=Physo109505.4;Parent=Physo109505;constitutive=1;ensembl_phase=2;rank=4 scaffold_121 . CDS 70101 71027 . + 0 ID=Physo109505;Parent=Physo109505;rank=5 scaffold_121 ensembl protein_coding_gene 59573 63388 . + . ID=Physo142744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210011;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 59573 63388 . + . ID=Physo142744;Parent=Physo142744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 59573 61045 . + 0 ID=Physo142744;Parent=Physo142744;rank=1 scaffold_121 . exon 59573 61045 . + . ID=Physo142744.1;Parent=Physo142744;constitutive=1;rank=1 scaffold_121 . CDS 61591 61792 . + 0 ID=Physo142744;Parent=Physo142744;rank=2 scaffold_121 . exon 61591 61792 . + . ID=Physo142744.2;Parent=Physo142744;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_121 . CDS 61815 61994 . + 0 ID=Physo142744;Parent=Physo142744;rank=3 scaffold_121 . exon 61815 61994 . + . ID=Physo142744.3;Parent=Physo142744;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_121 . CDS 62062 63305 . + 0 ID=Physo142744;Parent=Physo142744;rank=4 scaffold_121 . exon 62062 63388 . + . ID=Physo142744.4;Parent=Physo142744;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_121 . exon 70101 71270 . + . ID=Physo109505.5;Parent=Physo109505;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_121 ensembl protein_coding_gene 74786 75984 . - . ID=Physo142746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210013;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 74786 75984 . - . ID=Physo142746;Parent=Physo142746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 74786 75893 . - 0 ID=Physo142746;Parent=Physo142746;rank=2 scaffold_121 . exon 74786 75893 . - . ID=Physo142746.2;Parent=Physo142746;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 75944 75984 . - 0 ID=Physo142746;Parent=Physo142746;rank=1 scaffold_121 . exon 75944 75984 . - . ID=Physo142746.1;Parent=Physo142746;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . repeat_region 79128 79147 . ? . description=trf scaffold_121 . repeat_region 81472 81479 . ? . description=dust scaffold_121 . repeat_region 81648 81664 . ? . description=dust scaffold_121 . repeat_region 82351 82417 . ? . description=dust scaffold_121 . repeat_region 82352 82406 . ? . description=trf scaffold_121 . repeat_region 82373 82417 . ? . description=trf scaffold_121 . biological_region 82991 82992 0.999 + . logic_name=eponine scaffold_121 . biological_region 83420 83426 0.999 - . logic_name=eponine scaffold_121 . repeat_region 86864 87002 . ? . description=trf scaffold_121 . repeat_region 86882 87006 . ? . description=trf scaffold_121 . repeat_region 86889 87037 . ? . description=trf scaffold_121 ensembl protein_coding_gene 78604 79180 . - . ID=Physo142747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210014;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 78604 79180 . - . ID=Physo142747;Parent=Physo142747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 78604 78646 . - 0 ID=Physo142747;Parent=Physo142747;rank=2 scaffold_121 . exon 78604 78646 . - . ID=Physo142747.2;Parent=Physo142747;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 78732 79171 . - 0 ID=Physo142747;Parent=Physo142747;rank=1 scaffold_121 . exon 78732 79180 . - . ID=Physo142747.1;Parent=Physo142747;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_121 ensembl protein_coding_gene 82336 84405 . - . ID=Physo142748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210015;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 82336 84405 . - . ID=Physo142748;Parent=Physo142748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 82336 83177 . - 0 ID=Physo142748;Parent=Physo142748;rank=2 scaffold_121 . exon 82336 83177 . - . ID=Physo142748.2;Parent=Physo142748;constitutive=1;ensembl_phase=1;rank=2 scaffold_121 . CDS 83210 84395 . - 0 ID=Physo142748;Parent=Physo142748;rank=1 scaffold_121 . exon 83210 84405 . - . ID=Physo142748.1;Parent=Physo142748;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_121 ensembl protein_coding_gene 90411 90940 . - . ID=Physo109506;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1210002;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 90411 90940 . - . ID=Physo109506;Parent=Physo109506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . exon 90411 90473 . - . ID=Physo109506.4;Parent=Physo109506;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_121 . CDS 90428 90473 . - 0 ID=Physo109506;Parent=Physo109506;rank=4 scaffold_121 . CDS 90494 90526 . - 0 ID=Physo109506;Parent=Physo109506;rank=3 scaffold_121 . exon 90494 90526 . - . ID=Physo109506.3;Parent=Physo109506;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_121 . CDS 90698 90820 . - 0 ID=Physo109506;Parent=Physo109506;rank=2 scaffold_121 . exon 90698 90820 . - . ID=Physo109506.2;Parent=Physo109506;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_121 . CDS 90863 90939 . - 0 ID=Physo109506;Parent=Physo109506;rank=1 scaffold_121 . exon 90863 90940 . - . ID=Physo109506.1;Parent=Physo109506;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_121 . biological_region 99194 99194 0.999 - . logic_name=eponine scaffold_121 . repeat_region 100465 100694 . ? . description=trf scaffold_121 . repeat_region 103090 103098 . ? . description=dust scaffold_121 . repeat_region 103848 103855 . ? . description=dust scaffold_121 . biological_region 106604 106606 0.999 + . logic_name=eponine scaffold_121 . repeat_region 107344 107356 . ? . description=dust scaffold_121 ensembl protein_coding_gene 99337 100759 . + . ID=Physo142750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210017;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 99337 100759 . + . ID=Physo142750;Parent=Physo142750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 99337 99450 . + 0 ID=Physo142750;Parent=Physo142750;rank=1 scaffold_121 . exon 99337 99450 . + . ID=Physo142750.1;Parent=Physo142750;constitutive=1;rank=1 scaffold_121 . CDS 99589 99813 . + 0 ID=Physo142750;Parent=Physo142750;rank=2 scaffold_121 . exon 99589 99813 . + . ID=Physo142750.2;Parent=Physo142750;constitutive=1;rank=2 scaffold_121 . CDS 99894 100096 . + 0 ID=Physo142750;Parent=Physo142750;rank=3 scaffold_121 . exon 99894 100096 . + . ID=Physo142750.3;Parent=Physo142750;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_121 . CDS 100397 100535 . + 0 ID=Physo142750;Parent=Physo142750;rank=4 scaffold_121 . exon 100397 100535 . + . ID=Physo142750.4;Parent=Physo142750;constitutive=1;ensembl_phase=2;rank=4 scaffold_121 . CDS 100600 100708 . + 0 ID=Physo142750;Parent=Physo142750;rank=5 scaffold_121 . exon 100600 100708 . + . ID=Physo142750.5;Parent=Physo142750;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_121 . CDS 100755 100759 . + 0 ID=Physo142750;Parent=Physo142750;rank=6 scaffold_121 . exon 100755 100759 . + . ID=Physo142750.6;Parent=Physo142750;constitutive=1;ensembl_phase=1;rank=6 scaffold_121 ensembl protein_coding_gene 104300 105958 . - . ID=Physo142751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210018;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 104300 105958 . - . ID=Physo142751;Parent=Physo142751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 104300 105898 . - 0 ID=Physo142751;Parent=Physo142751;rank=1 scaffold_121 . exon 104300 105958 . - . ID=Physo142751.1;Parent=Physo142751;constitutive=1;ensembl_phase=-1;rank=1 scaffold_121 ensembl pseudogene 109540 111326 . - . ID=Physo142752;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_1210019;logic_name=jgi_physo1_1 scaffold_121 ensembl pseudogene 109540 111326 . - . ID=Physo142752;Parent=Physo142752;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_121 . exon 109540 111326 . - . ID=Physo142752.1;Parent=Physo142752;constitutive=1;ensembl_phase=-1;rank=1 scaffold_121 ensembl protein_coding_gene 113243 115678 . + . ID=Physo142753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210020;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 113243 115678 . + . ID=Physo142753;Parent=Physo142753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . exon 113243 115678 . + . ID=Physo142753.1;Parent=Physo142753;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_121 . CDS 113319 115469 . + 0 ID=Physo142753;Parent=Physo142753;rank=1 scaffold_121 . repeat_region 117748 117785 . ? . description=trf scaffold_121 . repeat_region 118047 118128 . ? . description=trf scaffold_121 . biological_region 118887 118893 0.999 + . logic_name=eponine scaffold_121 . biological_region 119007 119009 0.999 - . logic_name=eponine scaffold_121 . repeat_region 119695 119739 . ? . description=trf scaffold_121 . biological_region 124639 124640 0.999 + . logic_name=eponine scaffold_121 . biological_region 127010 127011 0.999 + . logic_name=eponine scaffold_121 ensembl protein_coding_gene 118071 119874 . + . ID=Physo142754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210021;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 118071 119874 . + . ID=Physo142754;Parent=Physo142754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . exon 118071 118083 . + . ID=Physo142754.1;Parent=Physo142754;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_121 . exon 118143 118147 . + . ID=Physo142754.2;Parent=Physo142754;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_121 . exon 118317 118331 . + . ID=Physo142754.3;Parent=Physo142754;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_121 . exon 118411 119874 . + . ID=Physo142754.4;Parent=Physo142754;constitutive=1;ensembl_phase=-1;rank=4 scaffold_121 . CDS 118477 119874 . + 0 ID=Physo142754;Parent=Physo142754;rank=1 scaffold_121 ensembl protein_coding_gene 123632 125278 . + . ID=Physo142756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210023;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 123632 125278 . + . ID=Physo142756;Parent=Physo142756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 123632 125278 . + 0 ID=Physo142756;Parent=Physo142756;rank=1 scaffold_121 . exon 123632 125278 . + . ID=Physo142756.1;Parent=Physo142756;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 125979 127632 . + . ID=Physo142757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210024;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 125979 127632 . + . ID=Physo142757;Parent=Physo142757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 125979 126163 . + 0 ID=Physo142757;Parent=Physo142757;rank=1 scaffold_121 . exon 125979 126163 . + . ID=Physo142757.1;Parent=Physo142757;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . CDS 126191 127221 . + 0 ID=Physo142757;Parent=Physo142757;rank=2 scaffold_121 . exon 126191 127221 . + . ID=Physo142757.2;Parent=Physo142757;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 127436 127632 . + 0 ID=Physo142757;Parent=Physo142757;rank=3 scaffold_121 ensembl protein_coding_gene 120188 122841 . - . ID=Physo158624;biotype=protein_coding;external_name=C_scaffold_121000002;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 120188 122841 . - . ID=Physo158624;Parent=Physo158624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 120188 120192 . - 0 ID=Physo158624;Parent=Physo158624;rank=7 scaffold_121 . exon 120188 120192 . - . ID=Physo158624.7;Parent=Physo158624;constitutive=1;ensembl_phase=1;rank=7 scaffold_121 . CDS 120240 120497 . - 0 ID=Physo158624;Parent=Physo158624;rank=6 scaffold_121 . exon 120240 120497 . - . ID=Physo158624.6;Parent=Physo158624;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_121 . CDS 120759 120921 . - 0 ID=Physo158624;Parent=Physo158624;rank=5 scaffold_121 . exon 120759 120921 . - . ID=Physo158624.5;Parent=Physo158624;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_121 . CDS 121072 121573 . - 0 ID=Physo158624;Parent=Physo158624;rank=4 scaffold_121 . exon 121072 121573 . - . ID=Physo158624.4;Parent=Physo158624;constitutive=1;ensembl_phase=2;rank=4 scaffold_121 . CDS 121712 122043 . - 0 ID=Physo158624;Parent=Physo158624;rank=3 scaffold_121 . exon 121712 122043 . - . ID=Physo158624.3;Parent=Physo158624;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_121 . CDS 122424 122502 . - 0 ID=Physo158624;Parent=Physo158624;rank=2 scaffold_121 . exon 122424 122502 . - . ID=Physo158624.2;Parent=Physo158624;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 . CDS 122660 122841 . - 0 ID=Physo158624;Parent=Physo158624;rank=1 scaffold_121 . exon 122660 122841 . - . ID=Physo158624.1;Parent=Physo158624;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . repeat_region 128166 128201 . ? . description=dust scaffold_121 . repeat_region 132690 132704 . ? . description=dust scaffold_121 . repeat_region 136697 136753 . + . description=Sola3-1_PS scaffold_121 . exon 127436 127632 . + . ID=Physo142757.3;Parent=Physo142757;constitutive=1;ensembl_phase=1;rank=3 scaffold_121 ensembl protein_coding_gene 128740 130428 . + . ID=Physo142758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210025;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 128740 130428 . + . ID=Physo142758;Parent=Physo142758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 128740 130428 . + 0 ID=Physo142758;Parent=Physo142758;rank=1 scaffold_121 . exon 128740 130428 . + . ID=Physo142758.1;Parent=Physo142758;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 131005 132557 . + . ID=Physo142759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210026;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 131005 132557 . + . ID=Physo142759;Parent=Physo142759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 131005 132404 . + 0 ID=Physo142759;Parent=Physo142759;rank=1 scaffold_121 . exon 131005 132404 . + . ID=Physo142759.1;Parent=Physo142759;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_121 . CDS 132437 132557 . + 0 ID=Physo142759;Parent=Physo142759;rank=2 scaffold_121 . exon 132437 132557 . + . ID=Physo142759.2;Parent=Physo142759;constitutive=1;ensembl_phase=2;rank=2 scaffold_121 ensembl protein_coding_gene 132742 135084 . - . ID=Physo142760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210027;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 132742 135084 . - . ID=Physo142760;Parent=Physo142760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 132742 135084 . - 0 ID=Physo142760;Parent=Physo142760;rank=1 scaffold_121 . exon 132742 135084 . - . ID=Physo142760.1;Parent=Physo142760;constitutive=1;rank=1 scaffold_121 . repeat_region 137590 137610 . ? . description=trf scaffold_121 . repeat_region 137611 137814 . ? . description=trf scaffold_121 . repeat_region 137815 137846 . ? . description=trf scaffold_121 . biological_region 138208 138217 0.999 + . logic_name=eponine scaffold_121 . biological_region 138228 138229 0.999 - . logic_name=eponine scaffold_121 . biological_region 138268 138273 0.999 - . logic_name=eponine scaffold_121 . biological_region 138302 138304 0.999 - . logic_name=eponine scaffold_121 . biological_region 141311 141314 0.999 + . logic_name=eponine scaffold_121 . biological_region 141425 141428 0.999 - . logic_name=eponine scaffold_121 . biological_region 142140 142143 0.999 - . logic_name=eponine scaffold_121 . biological_region 144462 144463 0.999 + . logic_name=eponine scaffold_121 . biological_region 145583 145585 0.999 + . logic_name=eponine scaffold_121 . biological_region 145647 145647 0.999 - . logic_name=eponine scaffold_121 . biological_region 146511 146515 0.999 + . logic_name=eponine scaffold_121 ensembl protein_coding_gene 139186 139887 . - . ID=Physo142761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210028;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 139186 139887 . - . ID=Physo142761;Parent=Physo142761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 139186 139887 . - 0 ID=Physo142761;Parent=Physo142761;rank=1 scaffold_121 . exon 139186 139887 . - . ID=Physo142761.1;Parent=Physo142761;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 141209 145542 . - . ID=Physo142762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210029;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 141209 145542 . - . ID=Physo142762;Parent=Physo142762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 141209 144918 . - 0 ID=Physo142762;Parent=Physo142762;rank=3 scaffold_121 . exon 141209 144918 . - . ID=Physo142762.3;Parent=Physo142762;constitutive=1;ensembl_phase=1;rank=3 scaffold_121 . CDS 145048 145429 . - 0 ID=Physo142762;Parent=Physo142762;rank=2 scaffold_121 . exon 145048 145429 . - . ID=Physo142762.2;Parent=Physo142762;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_121 . CDS 145528 145542 . - 0 ID=Physo142762;Parent=Physo142762;rank=1 scaffold_121 . exon 145528 145542 . - . ID=Physo142762.1;Parent=Physo142762;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 146123 148655 . + . ID=Physo142763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210030;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 146123 148655 . + . ID=Physo142763;Parent=Physo142763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 146123 146302 . + 0 ID=Physo142763;Parent=Physo142763;rank=1 scaffold_121 . exon 146123 146302 . + . ID=Physo142763.1;Parent=Physo142763;constitutive=1;rank=1 scaffold_121 . CDS 146380 146949 . + 0 ID=Physo142763;Parent=Physo142763;rank=2 scaffold_121 . exon 146380 146949 . + . ID=Physo142763.2;Parent=Physo142763;constitutive=1;rank=2 scaffold_121 . CDS 147083 148621 . + 0 ID=Physo142763;Parent=Physo142763;rank=3 scaffold_121 . repeat_region 152182 152191 . ? . description=dust scaffold_121 . exon 147083 148655 . + . ID=Physo142763.3;Parent=Physo142763;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_121 ensembl protein_coding_gene 148745 151315 . + . ID=Physo142764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210031;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 148745 151315 . + . ID=Physo142764;Parent=Physo142764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 148745 151315 . + 0 ID=Physo142764;Parent=Physo142764;rank=1 scaffold_121 . exon 148745 151315 . + . ID=Physo142764.1;Parent=Physo142764;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 152571 153203 . + . ID=Physo142765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210032;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 152571 153203 . + . ID=Physo142765;Parent=Physo142765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 152571 153203 . + 0 ID=Physo142765;Parent=Physo142765;rank=1 scaffold_121 . exon 152571 153203 . + . ID=Physo142765.1;Parent=Physo142765;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 153700 156456 . - . ID=Physo142766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210033;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 153700 156456 . - . ID=Physo142766;Parent=Physo142766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 153700 156456 . - 0 ID=Physo142766;Parent=Physo142766;rank=1 scaffold_121 . exon 153700 156456 . - . ID=Physo142766.1;Parent=Physo142766;constitutive=1;rank=1 scaffold_121 . biological_region 158848 158851 0.999 - . logic_name=eponine scaffold_121 . repeat_region 162011 167310 . - . description=Polinton-1_PI scaffold_121 . biological_region 162015 162022 0.999 - . logic_name=eponine scaffold_121 . biological_region 162047 162047 0.999 - . logic_name=eponine scaffold_121 ensembl protein_coding_gene 156913 159742 . - . ID=Physo142767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210034;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 156913 159742 . - . ID=Physo142767;Parent=Physo142767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 156913 156936 . - 0 ID=Physo142767;Parent=Physo142767;rank=4 scaffold_121 . exon 156913 156936 . - . ID=Physo142767.4;Parent=Physo142767;constitutive=1;rank=4 scaffold_121 . CDS 157201 157686 . - 0 ID=Physo142767;Parent=Physo142767;rank=3 scaffold_121 . exon 157201 157686 . - . ID=Physo142767.3;Parent=Physo142767;constitutive=1;rank=3 scaffold_121 . CDS 157787 158418 . - 0 ID=Physo142767;Parent=Physo142767;rank=2 scaffold_121 . exon 157787 158418 . - . ID=Physo142767.2;Parent=Physo142767;constitutive=1;ensembl_phase=1;rank=2 scaffold_121 . CDS 158551 159742 . - 0 ID=Physo142767;Parent=Physo142767;rank=1 scaffold_121 . exon 158551 159742 . - . ID=Physo142767.1;Parent=Physo142767;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_121 . repeat_region 172935 172984 . ? . description=dust scaffold_121 . repeat_region 174514 174563 . ? . description=dust scaffold_121 ensembl protein_coding_gene 168665 172717 . - . ID=Physo142768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210035;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 168665 172717 . - . ID=Physo142768;Parent=Physo142768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 168665 172717 . - 0 ID=Physo142768;Parent=Physo142768;rank=1 scaffold_121 . exon 168665 172717 . - . ID=Physo142768.1;Parent=Physo142768;constitutive=1;rank=1 scaffold_121 . repeat_region 176461 177499 . - . description=Polinton-1_PI scaffold_121 . repeat_region 178081 179074 . - . description=Polinton-1_PI scaffold_121 . repeat_region 179291 187091 . - . description=Polinton-1_PI scaffold_121 ensembl protein_coding_gene 185058 186536 . - . ID=Physo142769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210036;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 185058 186536 . - . ID=Physo142769;Parent=Physo142769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 185058 185907 . - 0 ID=Physo142769;Parent=Physo142769;rank=3 scaffold_121 . exon 185058 185907 . - . ID=Physo142769.3;Parent=Physo142769;constitutive=1;ensembl_phase=2;rank=3 scaffold_121 . CDS 186056 186483 . - 0 ID=Physo142769;Parent=Physo142769;rank=2 scaffold_121 . exon 186056 186483 . - . ID=Physo142769.2;Parent=Physo142769;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_121 . CDS 186510 186536 . - 0 ID=Physo142769;Parent=Physo142769;rank=1 scaffold_121 . repeat_region 186827 186834 . ? . description=dust scaffold_121 . biological_region 191235 191235 0.999 - . logic_name=eponine scaffold_121 . biological_region 193782 193785 0.999 + . logic_name=eponine scaffold_121 . biological_region 193801 193803 0.999 + . logic_name=eponine scaffold_121 . biological_region 193809 193810 0.999 - . logic_name=eponine scaffold_121 . biological_region 193813 193815 0.999 + . logic_name=eponine scaffold_121 . biological_region 193836 193842 0.999 - . logic_name=eponine scaffold_121 . exon 186510 186536 . - . ID=Physo142769.1;Parent=Physo142769;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 187044 188565 . - . ID=Physo142770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210037;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 187044 188565 . - . ID=Physo142770;Parent=Physo142770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . exon 187044 187365 . - . ID=Physo142770.3;Parent=Physo142770;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_121 . CDS 187150 187365 . - 0 ID=Physo142770;Parent=Physo142770;rank=3 scaffold_121 . CDS 187422 187912 . - 0 ID=Physo142770;Parent=Physo142770;rank=2 scaffold_121 . exon 187422 187912 . - . ID=Physo142770.2;Parent=Physo142770;constitutive=1;ensembl_phase=1;rank=2 scaffold_121 . CDS 187985 188555 . - 0 ID=Physo142770;Parent=Physo142770;rank=1 scaffold_121 . exon 187985 188565 . - . ID=Physo142770.1;Parent=Physo142770;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_121 ensembl protein_coding_gene 190055 190627 . + . ID=Physo142771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210038;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 190055 190627 . + . ID=Physo142771;Parent=Physo142771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 190055 190627 . + 0 ID=Physo142771;Parent=Physo142771;rank=1 scaffold_121 . exon 190055 190627 . + . ID=Physo142771.1;Parent=Physo142771;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 190905 191441 . - . ID=Physo142772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210039;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 190905 191441 . - . ID=Physo142772;Parent=Physo142772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . CDS 190905 191441 . - 0 ID=Physo142772;Parent=Physo142772;rank=1 scaffold_121 . exon 190905 191441 . - . ID=Physo142772.1;Parent=Physo142772;constitutive=1;rank=1 scaffold_121 ensembl protein_coding_gene 191943 194240 . - . ID=Physo142773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1210040;logic_name=jgi_physo1_1 scaffold_121 ensembl transcript 191943 194240 . - . ID=Physo142773;Parent=Physo142773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_121 . exon 191943 194067 . - . ID=Physo142773.2;Parent=Physo142773;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_121 . CDS 192060 194067 . - 0 ID=Physo142773;Parent=Physo142773;rank=2 scaffold_121 . CDS 194218 194240 . - 0 ID=Physo142773;Parent=Physo142773;rank=1 scaffold_121 . exon 194218 194240 . - . ID=Physo142773.1;Parent=Physo142773;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_114 1 198054 scaffold_114 . biological_region 3976 3977 0.999 + . logic_name=eponine scaffold_114 . biological_region 4036 4043 0.999 - . logic_name=eponine scaffold_114 . biological_region 4063 4065 0.999 + . logic_name=eponine scaffold_114 . biological_region 4093 4096 0.999 + . logic_name=eponine scaffold_114 . biological_region 5295 5298 0.999 + . logic_name=eponine scaffold_114 . biological_region 5336 5337 0.999 + . logic_name=eponine scaffold_114 . biological_region 5409 5412 0.999 + . logic_name=eponine scaffold_114 . biological_region 6190 6193 0.999 + . logic_name=eponine scaffold_114 . biological_region 7088 7089 0.999 + . logic_name=eponine scaffold_114 . repeat_region 7208 7284 . ? . description=dust scaffold_114 . repeat_region 7220 7284 . ? . description=trf scaffold_114 . repeat_region 7220 7284 . ? . description=trf scaffold_114 . repeat_region 7242 7284 . ? . description=trf scaffold_114 . repeat_region 8920 8999 . ? . description=trf scaffold_114 . repeat_region 9090 9149 . ? . description=trf scaffold_114 ensembl protein_coding_gene 4857 7220 . - . ID=Physo142401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140001;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 4857 7220 . - . ID=Physo142401;Parent=Physo142401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 4857 7220 . - 0 ID=Physo142401;Parent=Physo142401;rank=1 scaffold_114 . exon 4857 7220 . - . ID=Physo142401.1;Parent=Physo142401;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 12580 13032 . - . ID=Physo142402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140002;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 12580 13032 . - . ID=Physo142402;Parent=Physo142402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 12580 13032 . - 0 ID=Physo142402;Parent=Physo142402;rank=1 scaffold_114 . exon 12580 13032 . - . ID=Physo142402.1;Parent=Physo142402;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 15678 16034 . - . ID=Physo142403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140003;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 15678 16034 . - . ID=Physo142403;Parent=Physo142403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 15678 16034 . - 0 ID=Physo142403;Parent=Physo142403;rank=1 scaffold_114 . exon 15678 16034 . - . ID=Physo142403.1;Parent=Physo142403;constitutive=1;rank=1 scaffold_114 . biological_region 26099 26101 0.999 - . logic_name=eponine scaffold_114 . biological_region 26126 26132 0.999 - . logic_name=eponine scaffold_114 . biological_region 26154 26161 0.999 - . logic_name=eponine scaffold_114 . biological_region 26186 26190 0.999 + . logic_name=eponine scaffold_114 . biological_region 26676 26676 0.999 + . logic_name=eponine scaffold_114 . biological_region 26707 26716 0.999 - . logic_name=eponine scaffold_114 . biological_region 26880 26881 0.999 + . logic_name=eponine scaffold_114 ensembl protein_coding_gene 20253 20564 . + . ID=Physo142404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140004;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 20253 20564 . + . ID=Physo142404;Parent=Physo142404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 20253 20564 . + 0 ID=Physo142404;Parent=Physo142404;rank=1 scaffold_114 . exon 20253 20564 . + . ID=Physo142404.1;Parent=Physo142404;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 22224 24638 . - . ID=Physo142405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140005;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 22224 24638 . - . ID=Physo142405;Parent=Physo142405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 22224 23153 . - 0 ID=Physo142405;Parent=Physo142405;rank=2 scaffold_114 . exon 22224 23153 . - . ID=Physo142405.2;Parent=Physo142405;constitutive=1;rank=2 scaffold_114 . CDS 23487 24638 . - 0 ID=Physo142405;Parent=Physo142405;rank=1 scaffold_114 . exon 23487 24638 . - . ID=Physo142405.1;Parent=Physo142405;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 25005 27209 . - . ID=Physo142406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140006;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 25005 27209 . - . ID=Physo142406;Parent=Physo142406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 25005 27209 . - 0 ID=Physo142406;Parent=Physo142406;rank=1 scaffold_114 . exon 25005 27209 . - . ID=Physo142406.1;Parent=Physo142406;constitutive=1;rank=1 scaffold_114 . repeat_region 29710 29886 . - . description=Polinton-1_PI scaffold_114 . repeat_region 29909 29975 . - . description=Polinton-1_PI scaffold_114 . repeat_region 29999 47100 . - . description=Polinton-1_PI scaffold_114 . repeat_region 30236 30243 . ? . description=dust scaffold_114 ensembl protein_coding_gene 43516 46507 . - . ID=Physo142407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140007;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 43516 46507 . - . ID=Physo142407;Parent=Physo142407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 43516 44173 . - 0 ID=Physo142407;Parent=Physo142407;rank=3 scaffold_114 . exon 43516 44173 . - . ID=Physo142407.3;Parent=Physo142407;constitutive=1;ensembl_phase=2;rank=3 scaffold_114 . CDS 44730 44862 . - 0 ID=Physo142407;Parent=Physo142407;rank=2 scaffold_114 . exon 44730 44862 . - . ID=Physo142407.2;Parent=Physo142407;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_114 . CDS 44908 46507 . - 0 ID=Physo142407;Parent=Physo142407;rank=1 scaffold_114 . exon 44908 46507 . - . ID=Physo142407.1;Parent=Physo142407;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 ensembl protein_coding_gene 47053 48564 . - . ID=Physo142408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140008;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 47053 48564 . - . ID=Physo142408;Parent=Physo142408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . exon 47053 47371 . - . ID=Physo142408.4;Parent=Physo142408;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_114 . exon 47428 47916 . - . ID=Physo142408.3;Parent=Physo142408;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_114 . CDS 47687 47916 . - 0 ID=Physo142408;Parent=Physo142408;rank=3 scaffold_114 . CDS 47989 48418 . - 0 ID=Physo142408;Parent=Physo142408;rank=2 scaffold_114 . exon 47989 48418 . - . ID=Physo142408.2;Parent=Physo142408;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_114 . CDS 48443 48553 . - 0 ID=Physo142408;Parent=Physo142408;rank=1 scaffold_114 . exon 48443 48564 . - . ID=Physo142408.1;Parent=Physo142408;constitutive=1;ensembl_phase=-1;rank=1 scaffold_114 . biological_region 49999 50002 0.999 + . logic_name=eponine scaffold_114 . biological_region 53000 53001 0.999 + . logic_name=eponine scaffold_114 . repeat_region 57471 57499 . ? . description=trf scaffold_114 . biological_region 58048 58049 0.999 - . logic_name=eponine scaffold_114 ensembl protein_coding_gene 49700 51053 . - . ID=Physo142410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140010;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 49700 51053 . - . ID=Physo142410;Parent=Physo142410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . exon 49700 51053 . - . ID=Physo142410.1;Parent=Physo142410;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_114 . CDS 49782 51053 . - 0 ID=Physo142410;Parent=Physo142410;rank=1 scaffold_114 ensembl protein_coding_gene 51228 55484 . + . ID=Physo142411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140011;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 51228 55484 . + . ID=Physo142411;Parent=Physo142411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 51228 55484 . + 0 ID=Physo142411;Parent=Physo142411;rank=1 scaffold_114 . exon 51228 55484 . + . ID=Physo142411.1;Parent=Physo142411;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 56206 58594 . + . ID=Physo142412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140012;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 56206 58594 . + . ID=Physo142412;Parent=Physo142412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 56206 56457 . + 0 ID=Physo142412;Parent=Physo142412;rank=1 scaffold_114 . exon 56206 56457 . + . ID=Physo142412.1;Parent=Physo142412;constitutive=1;rank=1 scaffold_114 . CDS 56607 57011 . + 0 ID=Physo142412;Parent=Physo142412;rank=2 scaffold_114 . exon 56607 57011 . + . ID=Physo142412.2;Parent=Physo142412;constitutive=1;rank=2 scaffold_114 . CDS 57257 58594 . + 0 ID=Physo142412;Parent=Physo142412;rank=3 scaffold_114 . exon 57257 58594 . + . ID=Physo142412.3;Parent=Physo142412;constitutive=1;rank=3 scaffold_114 . repeat_region 66591 66610 . ? . description=dust scaffold_114 ensembl protein_coding_gene 61639 64678 . + . ID=Physo142413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140013;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 61639 64678 . + . ID=Physo142413;Parent=Physo142413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 61639 61665 . + 0 ID=Physo142413;Parent=Physo142413;rank=1 scaffold_114 . exon 61639 61665 . + . ID=Physo142413.1;Parent=Physo142413;constitutive=1;rank=1 scaffold_114 . CDS 62000 63168 . + 0 ID=Physo142413;Parent=Physo142413;rank=2 scaffold_114 . exon 62000 63168 . + . ID=Physo142413.2;Parent=Physo142413;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_114 . CDS 63331 64678 . + 0 ID=Physo142413;Parent=Physo142413;rank=3 scaffold_114 . exon 63331 64678 . + . ID=Physo142413.3;Parent=Physo142413;constitutive=1;ensembl_phase=2;rank=3 scaffold_114 ensembl protein_coding_gene 64862 66238 . - . ID=Physo142414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140014;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 64862 66238 . - . ID=Physo142414;Parent=Physo142414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 64862 66238 . - 0 ID=Physo142414;Parent=Physo142414;rank=1 scaffold_114 . exon 64862 66238 . - . ID=Physo142414.1;Parent=Physo142414;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 66579 68211 . + . ID=Physo142415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140015;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 66579 68211 . + . ID=Physo142415;Parent=Physo142415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 66579 66770 . + 0 ID=Physo142415;Parent=Physo142415;rank=1 scaffold_114 . exon 66579 66770 . + . ID=Physo142415.1;Parent=Physo142415;constitutive=1;rank=1 scaffold_114 . CDS 66839 67018 . + 0 ID=Physo142415;Parent=Physo142415;rank=2 scaffold_114 . exon 66839 67018 . + . ID=Physo142415.2;Parent=Physo142415;constitutive=1;rank=2 scaffold_114 . CDS 67080 67588 . + 0 ID=Physo142415;Parent=Physo142415;rank=3 scaffold_114 . exon 67080 67588 . + . ID=Physo142415.3;Parent=Physo142415;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_114 . CDS 67654 67801 . + 0 ID=Physo142415;Parent=Physo142415;rank=4 scaffold_114 . exon 67654 67801 . + . ID=Physo142415.4;Parent=Physo142415;constitutive=1;ensembl_phase=2;rank=4 scaffold_114 . CDS 67876 68211 . + 0 ID=Physo142415;Parent=Physo142415;rank=5 scaffold_114 . exon 67876 68211 . + . ID=Physo142415.5;Parent=Physo142415;constitutive=1;rank=5 scaffold_114 ensembl protein_coding_gene 68675 69466 . + . ID=Physo142416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140016;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 68675 69466 . + . ID=Physo142416;Parent=Physo142416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 68675 69466 . + 0 ID=Physo142416;Parent=Physo142416;rank=1 scaffold_114 . exon 68675 69466 . + . ID=Physo142416.1;Parent=Physo142416;constitutive=1;rank=1 scaffold_114 . biological_region 69580 69580 0.999 + . logic_name=eponine scaffold_114 . biological_region 69787 69792 0.999 - . logic_name=eponine scaffold_114 . biological_region 75137 75140 0.999 + . logic_name=eponine scaffold_114 . biological_region 75544 75544 0.999 + . logic_name=eponine scaffold_114 . biological_region 75649 75655 0.999 - . logic_name=eponine scaffold_114 . biological_region 75667 75668 0.999 + . logic_name=eponine scaffold_114 . biological_region 76403 76406 0.999 + . logic_name=eponine scaffold_114 . repeat_region 77748 77787 . ? . description=trf scaffold_114 . repeat_region 77757 77787 . ? . description=trf scaffold_114 . biological_region 77964 77967 0.999 + . logic_name=eponine scaffold_114 . biological_region 78056 78066 0.999 - . logic_name=eponine scaffold_114 . biological_region 78086 78090 0.999 + . logic_name=eponine scaffold_114 ensembl protein_coding_gene 70678 71628 . + . ID=Physo142417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140017;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 70678 71628 . + . ID=Physo142417;Parent=Physo142417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 70678 71628 . + 0 ID=Physo142417;Parent=Physo142417;rank=1 scaffold_114 . exon 70678 71628 . + . ID=Physo142417.1;Parent=Physo142417;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 71755 72825 . - . ID=Physo142418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140018;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 71755 72825 . - . ID=Physo142418;Parent=Physo142418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 71755 72825 . - 0 ID=Physo142418;Parent=Physo142418;rank=1 scaffold_114 . exon 71755 72825 . - . ID=Physo142418.1;Parent=Physo142418;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 74131 77081 . + . ID=Physo142419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140019;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 74131 77081 . + . ID=Physo142419;Parent=Physo142419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 74131 74186 . + 0 ID=Physo142419;Parent=Physo142419;rank=1 scaffold_114 . exon 74131 74186 . + . ID=Physo142419.1;Parent=Physo142419;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_114 . CDS 74207 75079 . + 0 ID=Physo142419;Parent=Physo142419;rank=2 scaffold_114 . exon 74207 75079 . + . ID=Physo142419.2;Parent=Physo142419;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_114 . CDS 75111 75230 . + 0 ID=Physo142419;Parent=Physo142419;rank=3 scaffold_114 . exon 75111 75230 . + . ID=Physo142419.3;Parent=Physo142419;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_114 . CDS 75533 77081 . + 0 ID=Physo142419;Parent=Physo142419;rank=4 scaffold_114 . exon 75533 77081 . + . ID=Physo142419.4;Parent=Physo142419;constitutive=1;ensembl_phase=2;rank=4 scaffold_114 ensembl protein_coding_gene 77292 80430 . + . ID=Physo142420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140020;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 77292 80430 . + . ID=Physo142420;Parent=Physo142420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 77292 80369 . + 0 ID=Physo142420;Parent=Physo142420;rank=1 scaffold_114 . exon 77292 80430 . + . ID=Physo142420.1;Parent=Physo142420;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_114 ensembl protein_coding_gene 80546 81176 . + . ID=Physo142421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140021;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 80546 81176 . + . ID=Physo142421;Parent=Physo142421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 80546 81005 . + 0 ID=Physo142421;Parent=Physo142421;rank=1 scaffold_114 . exon 80546 81005 . + . ID=Physo142421.1;Parent=Physo142421;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 . CDS 81136 81176 . + 0 ID=Physo142421;Parent=Physo142421;rank=2 scaffold_114 . exon 81136 81176 . + . ID=Physo142421.2;Parent=Physo142421;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 ensembl protein_coding_gene 81969 83672 . + . ID=Physo142422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140022;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 81969 83672 . + . ID=Physo142422;Parent=Physo142422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 81969 83672 . + 0 ID=Physo142422;Parent=Physo142422;rank=1 scaffold_114 . exon 81969 83672 . + . ID=Physo142422.1;Parent=Physo142422;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 84647 86929 . + . ID=Physo142423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140023;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 84647 86929 . + . ID=Physo142423;Parent=Physo142423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 84647 86929 . + 0 ID=Physo142423;Parent=Physo142423;rank=1 scaffold_114 . exon 84647 86929 . + . ID=Physo142423.1;Parent=Physo142423;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 87108 88805 . - . ID=Physo142424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140024;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 87108 88805 . - . ID=Physo142424;Parent=Physo142424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 87108 87758 . - 0 ID=Physo142424;Parent=Physo142424;rank=5 scaffold_114 . exon 87108 87758 . - . ID=Physo142424.5;Parent=Physo142424;constitutive=1;rank=5 scaffold_114 . CDS 87823 87936 . - 0 ID=Physo142424;Parent=Physo142424;rank=4 scaffold_114 . exon 87823 87936 . - . ID=Physo142424.4;Parent=Physo142424;constitutive=1;rank=4 scaffold_114 . CDS 88006 88074 . - 0 ID=Physo142424;Parent=Physo142424;rank=3 scaffold_114 . exon 88006 88074 . - . ID=Physo142424.3;Parent=Physo142424;constitutive=1;rank=3 scaffold_114 . CDS 88243 88400 . - 0 ID=Physo142424;Parent=Physo142424;rank=2 scaffold_114 . exon 88243 88400 . - . ID=Physo142424.2;Parent=Physo142424;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 88427 88805 . - 0 ID=Physo142424;Parent=Physo142424;rank=1 scaffold_114 . exon 88427 88805 . - . ID=Physo142424.1;Parent=Physo142424;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 . biological_region 94938 94941 0.999 - . logic_name=eponine scaffold_114 . biological_region 95135 95141 0.999 + . logic_name=eponine scaffold_114 . biological_region 95253 95255 0.999 - . logic_name=eponine scaffold_114 . repeat_region 96921 96928 . ? . description=dust scaffold_114 . biological_region 97268 97271 0.999 - . logic_name=eponine scaffold_114 . biological_region 97359 97362 0.999 - . logic_name=eponine scaffold_114 ensembl protein_coding_gene 97446 99641 . + . ID=Physo109474;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1140001;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 97446 99641 . + . ID=Physo109474;Parent=Physo109474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 97446 99641 . + 0 ID=Physo109474;Parent=Physo109474;rank=1 scaffold_114 . exon 97446 99641 . + . ID=Physo109474.1;Parent=Physo109474;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 93824 95953 . + . ID=Physo142425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140025;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 93824 95953 . + . ID=Physo142425;Parent=Physo142425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 93824 95953 . + 0 ID=Physo142425;Parent=Physo142425;rank=1 scaffold_114 . exon 93824 95953 . + . ID=Physo142425.1;Parent=Physo142425;constitutive=1;rank=1 scaffold_114 . repeat_region 106246 106273 . ? . description=trf scaffold_114 ensembl protein_coding_gene 102460 104296 . + . ID=Physo142429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140029;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 102460 104296 . + . ID=Physo142429;Parent=Physo142429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 102460 103281 . + 0 ID=Physo142429;Parent=Physo142429;rank=1 scaffold_114 . exon 102460 103281 . + . ID=Physo142429.1;Parent=Physo142429;constitutive=1;rank=1 scaffold_114 . CDS 103353 103974 . + 0 ID=Physo142429;Parent=Physo142429;rank=2 scaffold_114 . exon 103353 103974 . + . ID=Physo142429.2;Parent=Physo142429;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_114 . CDS 104244 104296 . + 0 ID=Physo142429;Parent=Physo142429;rank=3 scaffold_114 . exon 104244 104296 . + . ID=Physo142429.3;Parent=Physo142429;constitutive=1;ensembl_phase=1;rank=3 scaffold_114 ensembl protein_coding_gene 104543 105801 . - . ID=Physo142430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140030;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 104543 105801 . - . ID=Physo142430;Parent=Physo142430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 104543 104975 . - 0 ID=Physo142430;Parent=Physo142430;rank=5 scaffold_114 . exon 104543 104975 . - . ID=Physo142430.5;Parent=Physo142430;constitutive=1;ensembl_phase=2;rank=5 scaffold_114 . CDS 105053 105192 . - 0 ID=Physo142430;Parent=Physo142430;rank=4 scaffold_114 . exon 105053 105192 . - . ID=Physo142430.4;Parent=Physo142430;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_114 . CDS 105238 105529 . - 0 ID=Physo142430;Parent=Physo142430;rank=3 scaffold_114 . exon 105238 105529 . - . ID=Physo142430.3;Parent=Physo142430;constitutive=1;ensembl_phase=2;rank=3 scaffold_114 . CDS 105599 105653 . - 0 ID=Physo142430;Parent=Physo142430;rank=2 scaffold_114 . exon 105599 105653 . - . ID=Physo142430.2;Parent=Physo142430;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_114 . CDS 105711 105801 . - 0 ID=Physo142430;Parent=Physo142430;rank=1 scaffold_114 . exon 105711 105801 . - . ID=Physo142430.1;Parent=Physo142430;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 ensembl protein_coding_gene 106807 110567 . + . ID=Physo142431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140031;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 106807 110567 . + . ID=Physo142431;Parent=Physo142431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 106807 108516 . + 0 ID=Physo142431;Parent=Physo142431;rank=1 scaffold_114 . exon 106807 108516 . + . ID=Physo142431.1;Parent=Physo142431;constitutive=1;rank=1 scaffold_114 . CDS 108768 110567 . + 0 ID=Physo142431;Parent=Physo142431;rank=2 scaffold_114 . exon 108768 110567 . + . ID=Physo142431.2;Parent=Physo142431;constitutive=1;rank=2 scaffold_114 ensembl protein_coding_gene 99937 101725 . - . ID=Physo158525;biotype=protein_coding;external_name=C_scaffold_114000002;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 99937 101725 . - . ID=Physo158525;Parent=Physo158525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 99937 100612 . - 0 ID=Physo158525;Parent=Physo158525;rank=2 scaffold_114 . exon 99937 100612 . - . ID=Physo158525.2;Parent=Physo158525;constitutive=1;ensembl_phase=2;rank=2 scaffold_114 . CDS 100926 101725 . - 0 ID=Physo158525;Parent=Physo158525;rank=1 scaffold_114 . exon 100926 101725 . - . ID=Physo158525.1;Parent=Physo158525;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_114 . biological_region 111875 111876 0.999 + . logic_name=eponine scaffold_114 . biological_region 112307 112308 0.999 - . logic_name=eponine scaffold_114 . biological_region 113502 113503 0.999 + . logic_name=eponine scaffold_114 . biological_region 114157 114159 0.999 - . logic_name=eponine scaffold_114 . biological_region 114933 114934 0.999 + . logic_name=eponine scaffold_114 . biological_region 118569 118571 0.999 + . logic_name=eponine scaffold_114 . biological_region 118599 118600 0.999 + . logic_name=eponine scaffold_114 . biological_region 118708 118712 0.999 + . logic_name=eponine scaffold_114 . biological_region 118797 118802 0.999 - . logic_name=eponine scaffold_114 ensembl protein_coding_gene 110654 111484 . - . ID=Physo142432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140032;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 110654 111484 . - . ID=Physo142432;Parent=Physo142432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 110654 111484 . - 0 ID=Physo142432;Parent=Physo142432;rank=1 scaffold_114 . exon 110654 111484 . - . ID=Physo142432.1;Parent=Physo142432;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 111764 112324 . + . ID=Physo142433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140033;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 111764 112324 . + . ID=Physo142433;Parent=Physo142433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 111764 112324 . + 0 ID=Physo142433;Parent=Physo142433;rank=1 scaffold_114 . exon 111764 112324 . + . ID=Physo142433.1;Parent=Physo142433;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 112644 118337 . - . ID=Physo142434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140034;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 112644 118337 . - . ID=Physo142434;Parent=Physo142434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 112644 118337 . - 0 ID=Physo142434;Parent=Physo142434;rank=1 scaffold_114 . exon 112644 118337 . - . ID=Physo142434.1;Parent=Physo142434;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 118544 119404 . + . ID=Physo142435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140035;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 118544 119404 . + . ID=Physo142435;Parent=Physo142435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 118544 119404 . + 0 ID=Physo142435;Parent=Physo142435;rank=1 scaffold_114 . exon 118544 119404 . + . ID=Physo142435.1;Parent=Physo142435;constitutive=1;rank=1 scaffold_114 . repeat_region 126676 126689 . ? . description=dust scaffold_114 ensembl protein_coding_gene 120497 123734 . - . ID=Physo122811;biotype=protein_coding;external_name=estExt_Genewise1.C_1140039;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 120497 123734 . - . ID=Physo122811;Parent=Physo122811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 120497 120947 . - 0 ID=Physo122811;Parent=Physo122811;rank=4 scaffold_114 . exon 120497 120947 . - . ID=Physo122811.4;Parent=Physo122811;constitutive=1;ensembl_phase=2;rank=4 scaffold_114 . CDS 120984 121260 . - 0 ID=Physo122811;Parent=Physo122811;rank=3 scaffold_114 . exon 120984 121260 . - . ID=Physo122811.3;Parent=Physo122811;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_114 . CDS 121634 122921 . - 0 ID=Physo122811;Parent=Physo122811;rank=2 scaffold_114 . exon 121634 122921 . - . ID=Physo122811.2;Parent=Physo122811;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_114 . CDS 123003 123599 . - 0 ID=Physo122811;Parent=Physo122811;rank=1 scaffold_114 . exon 123003 123734 . - . ID=Physo122811.1;Parent=Physo122811;constitutive=1;ensembl_phase=-1;rank=1 scaffold_114 . biological_region 129055 129057 0.999 + . logic_name=eponine scaffold_114 . biological_region 129089 129097 0.999 + . logic_name=eponine scaffold_114 . biological_region 132235 132237 0.999 + . logic_name=eponine scaffold_114 . biological_region 132311 132315 0.999 + . logic_name=eponine scaffold_114 . biological_region 135192 135196 0.999 - . logic_name=eponine scaffold_114 . biological_region 136907 136908 0.999 - . logic_name=eponine scaffold_114 . repeat_region 142249 142257 . ? . description=dust scaffold_114 . repeat_region 147989 148035 . ? . description=trf scaffold_114 ensembl protein_coding_gene 139484 140032 . - . ID=Physo142436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140036;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 139484 140032 . - . ID=Physo142436;Parent=Physo142436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 139484 139743 . - 0 ID=Physo142436;Parent=Physo142436;rank=2 scaffold_114 . exon 139484 139743 . - . ID=Physo142436.2;Parent=Physo142436;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 139939 140032 . - 0 ID=Physo142436;Parent=Physo142436;rank=1 scaffold_114 . exon 139939 140032 . - . ID=Physo142436.1;Parent=Physo142436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 ensembl protein_coding_gene 145259 145684 . - . ID=Physo142437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140037;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 145259 145684 . - . ID=Physo142437;Parent=Physo142437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 145259 145273 . - 0 ID=Physo142437;Parent=Physo142437;rank=2 scaffold_114 . exon 145259 145273 . - . ID=Physo142437.2;Parent=Physo142437;constitutive=1;rank=2 scaffold_114 . CDS 145397 145684 . - 0 ID=Physo142437;Parent=Physo142437;rank=1 scaffold_114 . exon 145397 145684 . - . ID=Physo142437.1;Parent=Physo142437;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 146373 146985 . - . ID=Physo142438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140038;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 146373 146985 . - . ID=Physo142438;Parent=Physo142438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 146373 146384 . - 0 ID=Physo142438;Parent=Physo142438;rank=3 scaffold_114 . exon 146373 146384 . - . ID=Physo142438.3;Parent=Physo142438;constitutive=1;rank=3 scaffold_114 . CDS 146470 146697 . - 0 ID=Physo142438;Parent=Physo142438;rank=2 scaffold_114 . exon 146470 146697 . - . ID=Physo142438.2;Parent=Physo142438;constitutive=1;rank=2 scaffold_114 . CDS 146752 146985 . - 0 ID=Physo142438;Parent=Physo142438;rank=1 scaffold_114 . exon 146752 146985 . - . ID=Physo142438.1;Parent=Physo142438;constitutive=1;rank=1 scaffold_114 . biological_region 153318 153320 0.999 + . logic_name=eponine scaffold_114 . biological_region 153451 153456 0.999 - . logic_name=eponine scaffold_114 . repeat_region 159603 159636 . ? . description=dust scaffold_114 . repeat_region 161845 161909 . ? . description=trf scaffold_114 ensembl protein_coding_gene 160052 162969 . + . ID=Physo142440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140040;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 160052 162969 . + . ID=Physo142440;Parent=Physo142440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . exon 160052 161877 . + . ID=Physo142440.1;Parent=Physo142440;constitutive=1;ensembl_phase=-1;rank=1 scaffold_114 . CDS 161596 161877 . + 0 ID=Physo142440;Parent=Physo142440;rank=1 scaffold_114 . CDS 161945 162476 . + 0 ID=Physo142440;Parent=Physo142440;rank=2 scaffold_114 . exon 161945 162476 . + . ID=Physo142440.2;Parent=Physo142440;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_114 . CDS 162530 162969 . + 0 ID=Physo142440;Parent=Physo142440;rank=3 scaffold_114 . exon 162530 162969 . + . ID=Physo142440.3;Parent=Physo142440;constitutive=1;ensembl_phase=1;rank=3 scaffold_114 ensembl protein_coding_gene 163257 172439 . - . ID=Physo142441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140041;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 163257 172439 . - . ID=Physo142441;Parent=Physo142441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 163257 163658 . - 0 ID=Physo142441;Parent=Physo142441;rank=7 scaffold_114 . exon 163257 163658 . - . ID=Physo142441.7;Parent=Physo142441;constitutive=1;rank=7 scaffold_114 . CDS 163836 164537 . - 0 ID=Physo142441;Parent=Physo142441;rank=6 scaffold_114 . exon 163836 164537 . - . ID=Physo142441.6;Parent=Physo142441;constitutive=1;rank=6 scaffold_114 . CDS 164582 166632 . - 0 ID=Physo142441;Parent=Physo142441;rank=5 scaffold_114 . exon 164582 166632 . - . ID=Physo142441.5;Parent=Physo142441;constitutive=1;ensembl_phase=1;rank=5 scaffold_114 . CDS 166698 168463 . - 0 ID=Physo142441;Parent=Physo142441;rank=4 scaffold_114 . exon 166698 168463 . - . ID=Physo142441.4;Parent=Physo142441;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_114 . CDS 168611 169528 . - 0 ID=Physo142441;Parent=Physo142441;rank=3 scaffold_114 . CDS 169559 171003 . - 0 ID=Physo142441;Parent=Physo142441;rank=2 scaffold_114 . CDS 171045 172439 . - 0 ID=Physo142441;Parent=Physo142441;rank=1 scaffold_114 . biological_region 168465 168466 0.999 + . logic_name=eponine scaffold_114 . biological_region 169210 169212 0.999 - . logic_name=eponine scaffold_114 . biological_region 169881 169883 0.999 - . logic_name=eponine scaffold_114 . biological_region 170324 170325 0.999 + . logic_name=eponine scaffold_114 . biological_region 170959 170964 0.999 + . logic_name=eponine scaffold_114 . biological_region 171046 171049 0.999 + . logic_name=eponine scaffold_114 . biological_region 171225 171226 0.999 - . logic_name=eponine scaffold_114 . biological_region 171244 171247 0.999 - . logic_name=eponine scaffold_114 . biological_region 171400 171404 0.999 - . logic_name=eponine scaffold_114 . biological_region 171612 171616 0.999 + . logic_name=eponine scaffold_114 . biological_region 171624 171628 0.999 + . logic_name=eponine scaffold_114 . biological_region 171923 171925 0.999 + . logic_name=eponine scaffold_114 . biological_region 171942 171948 0.999 + . logic_name=eponine scaffold_114 . biological_region 171987 171988 0.999 - . logic_name=eponine scaffold_114 . biological_region 172120 172122 0.999 - . logic_name=eponine scaffold_114 . biological_region 173921 173923 0.999 - . logic_name=eponine scaffold_114 . biological_region 174398 174401 0.999 + . logic_name=eponine scaffold_114 . exon 168611 169528 . - . ID=Physo142441.3;Parent=Physo142441;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_114 . exon 169559 171003 . - . ID=Physo142441.2;Parent=Physo142441;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_114 . exon 171045 172439 . - . ID=Physo142441.1;Parent=Physo142441;constitutive=1;rank=1 scaffold_114 . repeat_region 178261 178268 . ? . description=dust scaffold_114 . repeat_region 186640 186658 . ? . description=dust scaffold_114 . repeat_region 186874 186893 . ? . description=trf scaffold_114 ensembl protein_coding_gene 184354 185776 . - . ID=Physo122821;biotype=protein_coding;external_name=estExt_Genewise1.C_1140049;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 184354 185776 . - . ID=Physo122821;Parent=Physo122821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . exon 184354 185776 . - . ID=Physo122821.1;Parent=Physo122821;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_114 . CDS 184554 185771 . - 0 ID=Physo122821;Parent=Physo122821;rank=1 scaffold_114 ensembl protein_coding_gene 183167 183792 . - . ID=Physo142442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1140042;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 183167 183792 . - . ID=Physo142442;Parent=Physo142442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 183167 183619 . - 0 ID=Physo142442;Parent=Physo142442;rank=2 scaffold_114 . exon 183167 183619 . - . ID=Physo142442.2;Parent=Physo142442;constitutive=1;rank=2 scaffold_114 . CDS 183754 183792 . - 0 ID=Physo142442;Parent=Physo142442;rank=1 scaffold_114 . exon 183754 183792 . - . ID=Physo142442.1;Parent=Physo142442;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 186376 187044 . - . ID=Physo158527;biotype=protein_coding;external_name=C_scaffold_114000004;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 186376 187044 . - . ID=Physo158527;Parent=Physo158527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 186376 186598 . - 0 ID=Physo158527;Parent=Physo158527;rank=2 scaffold_114 . exon 186376 186598 . - . ID=Physo158527.2;Parent=Physo158527;constitutive=1;ensembl_phase=2;rank=2 scaffold_114 . CDS 186638 187044 . - 0 ID=Physo158527;Parent=Physo158527;rank=1 scaffold_114 . exon 186638 187044 . - . ID=Physo158527.1;Parent=Physo158527;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_114 ensembl protein_coding_gene 188082 192705 . - . ID=Physo158528;biotype=protein_coding;external_name=C_scaffold_114000005;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 188082 192705 . - . ID=Physo158528;Parent=Physo158528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 188082 188403 . - 0 ID=Physo158528;Parent=Physo158528;rank=7 scaffold_114 . exon 188082 188403 . - . ID=Physo158528.7;Parent=Physo158528;constitutive=1;ensembl_phase=2;rank=7 scaffold_114 . CDS 188458 189235 . - 0 ID=Physo158528;Parent=Physo158528;rank=6 scaffold_114 . CDS 189324 189605 . - 0 ID=Physo158528;Parent=Physo158528;rank=5 scaffold_114 . CDS 189684 189936 . - 0 ID=Physo158528;Parent=Physo158528;rank=4 scaffold_114 . CDS 189958 190325 . - 0 ID=Physo158528;Parent=Physo158528;rank=3 scaffold_114 . CDS 190365 192381 . - 0 ID=Physo158528;Parent=Physo158528;rank=2 scaffold_114 . CDS 192406 192705 . - 0 ID=Physo158528;Parent=Physo158528;rank=1 scaffold_114 . biological_region 188616 188617 0.999 - . logic_name=eponine scaffold_114 . biological_region 188621 188623 0.999 - . logic_name=eponine scaffold_114 . biological_region 188751 188753 0.999 - . logic_name=eponine scaffold_114 . biological_region 189208 189210 0.999 - . logic_name=eponine scaffold_114 . biological_region 190631 190637 0.999 + . logic_name=eponine scaffold_114 . biological_region 191418 191418 0.999 - . logic_name=eponine scaffold_114 . biological_region 192283 192289 0.999 + . logic_name=eponine scaffold_114 . biological_region 192633 192640 0.999 + . logic_name=eponine scaffold_114 . biological_region 193042 193046 0.999 - . logic_name=eponine scaffold_114 . biological_region 197081 197082 0.999 + . logic_name=eponine scaffold_114 . biological_region 197146 197149 0.999 - . logic_name=eponine scaffold_114 . biological_region 197176 197177 0.999 - . logic_name=eponine scaffold_114 . biological_region 197453 197460 0.999 + . logic_name=eponine scaffold_114 . exon 188458 189235 . - . ID=Physo158528.6;Parent=Physo158528;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_114 . exon 189324 189605 . - . ID=Physo158528.5;Parent=Physo158528;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_114 . exon 189684 189936 . - . ID=Physo158528.4;Parent=Physo158528;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_114 . exon 189958 190325 . - . ID=Physo158528.3;Parent=Physo158528;constitutive=1;ensembl_phase=1;rank=3 scaffold_114 . exon 190365 192381 . - . ID=Physo158528.2;Parent=Physo158528;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_114 . exon 192406 192705 . - . ID=Physo158528.1;Parent=Physo158528;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 193071 193834 . - . ID=Physo158531;biotype=protein_coding;external_name=C_scaffold_114000008;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 193071 193834 . - . ID=Physo158531;Parent=Physo158531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 193071 193128 . - 0 ID=Physo158531;Parent=Physo158531;rank=5 scaffold_114 . exon 193071 193128 . - . ID=Physo158531.5;Parent=Physo158531;constitutive=1;ensembl_phase=2;rank=5 scaffold_114 . CDS 193215 193343 . - 0 ID=Physo158531;Parent=Physo158531;rank=4 scaffold_114 . exon 193215 193343 . - . ID=Physo158531.4;Parent=Physo158531;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_114 . CDS 193418 193523 . - 0 ID=Physo158531;Parent=Physo158531;rank=3 scaffold_114 . exon 193418 193523 . - . ID=Physo158531.3;Parent=Physo158531;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_114 . CDS 193595 193670 . - 0 ID=Physo158531;Parent=Physo158531;rank=2 scaffold_114 . exon 193595 193670 . - . ID=Physo158531.2;Parent=Physo158531;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_114 . CDS 193766 193834 . - 0 ID=Physo158531;Parent=Physo158531;rank=1 scaffold_114 . exon 193766 193834 . - . ID=Physo158531.1;Parent=Physo158531;constitutive=1;rank=1 scaffold_114 ensembl protein_coding_gene 194014 196620 . + . ID=Physo158533;biotype=protein_coding;external_name=C_scaffold_114000010;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 194014 196620 . + . ID=Physo158533;Parent=Physo158533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 194014 194056 . + 0 ID=Physo158533;Parent=Physo158533;rank=1 scaffold_114 . exon 194014 194056 . + . ID=Physo158533.1;Parent=Physo158533;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_114 . CDS 194125 194180 . + 0 ID=Physo158533;Parent=Physo158533;rank=2 scaffold_114 . exon 194125 194180 . + . ID=Physo158533.2;Parent=Physo158533;constitutive=1;ensembl_phase=1;rank=2 scaffold_114 . CDS 194260 194340 . + 0 ID=Physo158533;Parent=Physo158533;rank=3 scaffold_114 . exon 194260 194340 . + . ID=Physo158533.3;Parent=Physo158533;constitutive=1;rank=3 scaffold_114 . CDS 194411 194938 . + 0 ID=Physo158533;Parent=Physo158533;rank=4 scaffold_114 . exon 194411 194938 . + . ID=Physo158533.4;Parent=Physo158533;constitutive=1;rank=4 scaffold_114 . CDS 195009 195113 . + 0 ID=Physo158533;Parent=Physo158533;rank=5 scaffold_114 . exon 195009 195113 . + . ID=Physo158533.5;Parent=Physo158533;constitutive=1;rank=5 scaffold_114 . CDS 195183 195305 . + 0 ID=Physo158533;Parent=Physo158533;rank=6 scaffold_114 . exon 195183 195305 . + . ID=Physo158533.6;Parent=Physo158533;constitutive=1;rank=6 scaffold_114 . CDS 195594 195705 . + 0 ID=Physo158533;Parent=Physo158533;rank=7 scaffold_114 . exon 195594 195705 . + . ID=Physo158533.7;Parent=Physo158533;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_114 . CDS 195817 195977 . + 0 ID=Physo158533;Parent=Physo158533;rank=8 scaffold_114 . exon 195817 195977 . + . ID=Physo158533.8;Parent=Physo158533;constitutive=1;ensembl_phase=1;rank=8 scaffold_114 . CDS 196008 196180 . + 0 ID=Physo158533;Parent=Physo158533;rank=9 scaffold_114 . exon 196008 196180 . + . ID=Physo158533.9;Parent=Physo158533;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_114 . CDS 196266 196388 . + 0 ID=Physo158533;Parent=Physo158533;rank=10 scaffold_114 . exon 196266 196388 . + . ID=Physo158533.10;Parent=Physo158533;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_114 . CDS 196476 196620 . + 0 ID=Physo158533;Parent=Physo158533;rank=11 scaffold_114 . exon 196476 196620 . + . ID=Physo158533.11;Parent=Physo158533;constitutive=1;ensembl_phase=2;rank=11 scaffold_114 ensembl protein_coding_gene 196852 197983 . - . ID=Physo158534;biotype=protein_coding;external_name=C_scaffold_114000011;logic_name=jgi_physo1_1 scaffold_114 ensembl transcript 196852 197983 . - . ID=Physo158534;Parent=Physo158534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_114 . CDS 196852 197176 . - 0 ID=Physo158534;Parent=Physo158534;rank=4 scaffold_114 . exon 196852 197176 . - . ID=Physo158534.4;Parent=Physo158534;constitutive=1;ensembl_phase=2;rank=4 scaffold_114 . CDS 197198 197356 . - 0 ID=Physo158534;Parent=Physo158534;rank=3 scaffold_114 . exon 197198 197356 . - . ID=Physo158534.3;Parent=Physo158534;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_114 . CDS 197459 197586 . - 0 ID=Physo158534;Parent=Physo158534;rank=2 scaffold_114 . exon 197459 197586 . - . ID=Physo158534.2;Parent=Physo158534;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_114 . CDS 197699 197983 . - 0 ID=Physo158534;Parent=Physo158534;rank=1 scaffold_114 . exon 197699 197983 . - . ID=Physo158534.1;Parent=Physo158534;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_116 1 202117 scaffold_116 . repeat_region 2818 2854 . ? . description=trf scaffold_116 . repeat_region 3294 3313 . ? . description=trf scaffold_116 . repeat_region 4928 4950 . ? . description=dust scaffold_116 . repeat_region 5478 5486 . ? . description=dust scaffold_116 . repeat_region 6242 6285 . ? . description=trf scaffold_116 . repeat_region 6594 6642 . ? . description=trf scaffold_116 . repeat_region 6604 6660 . ? . description=dust scaffold_116 . repeat_region 7490 7671 . ? . description=trf scaffold_116 ensembl protein_coding_gene 2547 3227 . - . ID=Physo142498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160001;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 2547 3227 . - . ID=Physo142498;Parent=Physo142498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 2547 3116 . - 0 ID=Physo142498;Parent=Physo142498;rank=2 scaffold_116 . exon 2547 3116 . - . ID=Physo142498.2;Parent=Physo142498;constitutive=1;rank=2 scaffold_116 . CDS 3156 3227 . - 0 ID=Physo142498;Parent=Physo142498;rank=1 scaffold_116 . exon 3156 3227 . - . ID=Physo142498.1;Parent=Physo142498;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 5981 6742 . + . ID=Physo142499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160002;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 5981 6742 . + . ID=Physo142499;Parent=Physo142499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 5981 6144 . + 0 ID=Physo142499;Parent=Physo142499;rank=1 scaffold_116 . exon 5981 6144 . + . ID=Physo142499.1;Parent=Physo142499;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_116 . CDS 6318 6565 . + 0 ID=Physo142499;Parent=Physo142499;rank=2 scaffold_116 . exon 6318 6565 . + . ID=Physo142499.2;Parent=Physo142499;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_116 . CDS 6594 6742 . + 0 ID=Physo142499;Parent=Physo142499;rank=3 scaffold_116 . exon 6594 6742 . + . ID=Physo142499.3;Parent=Physo142499;constitutive=1;ensembl_phase=1;rank=3 scaffold_116 . repeat_region 13547 24709 . ? . description=dust scaffold_116 . repeat_region 26854 26902 . ? . description=trf scaffold_116 . biological_region 33522 33523 0.999 - . logic_name=eponine scaffold_116 ensembl protein_coding_gene 29399 33527 . - . ID=Physo142500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160003;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 29399 33527 . - . ID=Physo142500;Parent=Physo142500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 29399 29404 . - 0 ID=Physo142500;Parent=Physo142500;rank=2 scaffold_116 . exon 29399 29404 . - . ID=Physo142500.2;Parent=Physo142500;constitutive=1;rank=2 scaffold_116 . CDS 32949 33527 . - 0 ID=Physo142500;Parent=Physo142500;rank=1 scaffold_116 . exon 32949 33527 . - . ID=Physo142500.1;Parent=Physo142500;constitutive=1;rank=1 scaffold_116 . repeat_region 42666 42740 . ? . description=trf scaffold_116 . repeat_region 44165 44188 . ? . description=dust scaffold_116 . repeat_region 44165 44192 . ? . description=trf scaffold_116 . repeat_region 44321 44404 . ? . description=trf scaffold_116 . repeat_region 45175 45182 . ? . description=dust scaffold_116 . repeat_region 45491 45498 . ? . description=dust scaffold_116 . repeat_region 46085 48318 . ? . description=dust scaffold_116 ensembl protein_coding_gene 41941 43659 . - . ID=Physo142501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160004;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 41941 43659 . - . ID=Physo142501;Parent=Physo142501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 41941 43659 . - 0 ID=Physo142501;Parent=Physo142501;rank=1 scaffold_116 . exon 41941 43659 . - . ID=Physo142501.1;Parent=Physo142501;constitutive=1;rank=1 scaffold_116 . biological_region 48797 48801 0.999 - . logic_name=eponine scaffold_116 . biological_region 53320 53321 0.999 + . logic_name=eponine scaffold_116 . biological_region 53364 53368 0.999 - . logic_name=eponine scaffold_116 . biological_region 53610 53613 0.999 - . logic_name=eponine scaffold_116 . biological_region 54245 54249 0.999 + . logic_name=eponine scaffold_116 . biological_region 55100 55106 0.999 + . logic_name=eponine scaffold_116 . biological_region 55160 55164 0.999 - . logic_name=eponine scaffold_116 . biological_region 55180 55184 0.999 - . logic_name=eponine scaffold_116 . biological_region 55196 55207 0.999 - . logic_name=eponine scaffold_116 . biological_region 55410 55411 0.999 - . logic_name=eponine scaffold_116 . biological_region 55801 55802 0.999 + . logic_name=eponine scaffold_116 . biological_region 55895 55897 0.999 - . logic_name=eponine scaffold_116 . biological_region 56500 56505 0.999 - . logic_name=eponine scaffold_116 . biological_region 56504 56506 0.999 + . logic_name=eponine scaffold_116 ensembl protein_coding_gene 48432 48902 . - . ID=Physo122873;biotype=protein_coding;external_name=estExt_Genewise1.C_1160016;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 48432 48902 . - . ID=Physo122873;Parent=Physo122873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 48432 48902 . - 0 ID=Physo122873;Parent=Physo122873;rank=1 scaffold_116 . exon 48432 48902 . - . ID=Physo122873.1;Parent=Physo122873;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 53243 54613 . + . ID=Physo122879;biotype=protein_coding;external_name=estExt_Genewise1.C_1160022;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 53243 54613 . + . ID=Physo122879;Parent=Physo122879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . exon 53243 53593 . + . ID=Physo122879.1;Parent=Physo122879;constitutive=1;ensembl_phase=-1;rank=1 scaffold_116 . CDS 53321 53593 . + 0 ID=Physo122879;Parent=Physo122879;rank=1 scaffold_116 . CDS 54287 54613 . + 0 ID=Physo122879;Parent=Physo122879;rank=2 scaffold_116 . exon 54287 54613 . + . ID=Physo122879.2;Parent=Physo122879;constitutive=1;rank=2 scaffold_116 ensembl protein_coding_gene 54869 55895 . + . ID=Physo142503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160006;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 54869 55895 . + . ID=Physo142503;Parent=Physo142503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . exon 54869 55273 . + . ID=Physo142503.1;Parent=Physo142503;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_116 . CDS 55104 55273 . + 0 ID=Physo142503;Parent=Physo142503;rank=1 scaffold_116 . CDS 55310 55895 . + 0 ID=Physo142503;Parent=Physo142503;rank=2 scaffold_116 . exon 55310 55895 . + . ID=Physo142503.2;Parent=Physo142503;constitutive=1;ensembl_phase=2;rank=2 scaffold_116 . repeat_region 62251 62258 . ? . description=dust scaffold_116 ensembl protein_coding_gene 62277 63884 . - . ID=Physo142504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160007;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 62277 63884 . - . ID=Physo142504;Parent=Physo142504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 62277 63884 . - 0 ID=Physo142504;Parent=Physo142504;rank=1 scaffold_116 . exon 62277 63884 . - . ID=Physo142504.1;Parent=Physo142504;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 64966 68222 . - . ID=Physo142505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160008;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 64966 68222 . - . ID=Physo142505;Parent=Physo142505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 64966 67968 . - 0 ID=Physo142505;Parent=Physo142505;rank=2 scaffold_116 . exon 64966 67968 . - . ID=Physo142505.2;Parent=Physo142505;constitutive=1;rank=2 scaffold_116 . CDS 68061 68222 . - 0 ID=Physo142505;Parent=Physo142505;rank=1 scaffold_116 . repeat_region 68433 68486 . ? . description=trf scaffold_116 . repeat_region 75438 75468 . ? . description=trf scaffold_116 . biological_region 75908 75909 0.999 - . logic_name=eponine scaffold_116 . repeat_region 76180 76239 . ? . description=trf scaffold_116 . repeat_region 76190 76245 . ? . description=trf scaffold_116 . repeat_region 76493 76517 . ? . description=trf scaffold_116 ensembl protein_coding_gene 74748 74972 . + . ID=Physo122885;biotype=protein_coding;external_name=estExt_Genewise1.C_1160028;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 74748 74972 . + . ID=Physo122885;Parent=Physo122885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 74748 74972 . + 0 ID=Physo122885;Parent=Physo122885;rank=1 scaffold_116 . exon 74748 74972 . + . ID=Physo122885.1;Parent=Physo122885;constitutive=1;rank=1 scaffold_116 . exon 68061 68222 . - . ID=Physo142505.1;Parent=Physo142505;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 69972 70631 . + . ID=Physo142506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160009;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 69972 70631 . + . ID=Physo142506;Parent=Physo142506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . exon 69972 70631 . + . ID=Physo142506.1;Parent=Physo142506;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_116 . CDS 69973 70497 . + 0 ID=Physo142506;Parent=Physo142506;rank=1 scaffold_116 ensembl protein_coding_gene 73283 74059 . - . ID=Physo142507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160010;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 73283 74059 . - . ID=Physo142507;Parent=Physo142507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 73283 74059 . - 0 ID=Physo142507;Parent=Physo142507;rank=1 scaffold_116 . exon 73283 74059 . - . ID=Physo142507.1;Parent=Physo142507;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 75430 76479 . - . ID=Physo158550;biotype=protein_coding;external_name=C_scaffold_116000002;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 75430 76479 . - . ID=Physo158550;Parent=Physo158550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 75430 75744 . - 0 ID=Physo158550;Parent=Physo158550;rank=3 scaffold_116 . exon 75430 75744 . - . ID=Physo158550.3;Parent=Physo158550;constitutive=1;rank=3 scaffold_116 . CDS 75820 76248 . - 0 ID=Physo158550;Parent=Physo158550;rank=2 scaffold_116 . exon 75820 76248 . - . ID=Physo158550.2;Parent=Physo158550;constitutive=1;rank=2 scaffold_116 . CDS 76270 76479 . - 0 ID=Physo158550;Parent=Physo158550;rank=1 scaffold_116 . exon 76270 76479 . - . ID=Physo158550.1;Parent=Physo158550;constitutive=1;rank=1 scaffold_116 . repeat_region 78771 78782 . ? . description=dust scaffold_116 . repeat_region 80296 80303 . ? . description=dust scaffold_116 . repeat_region 84313 84326 . ? . description=dust scaffold_116 . repeat_region 86293 86301 . ? . description=dust scaffold_116 ensembl protein_coding_gene 77061 77861 . - . ID=Physo142510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160013;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 77061 77861 . - . ID=Physo142510;Parent=Physo142510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 77061 77846 . - 0 ID=Physo142510;Parent=Physo142510;rank=1 scaffold_116 . exon 77061 77861 . - . ID=Physo142510.1;Parent=Physo142510;constitutive=1;ensembl_phase=-1;rank=1 scaffold_116 ensembl protein_coding_gene 79215 80165 . + . ID=Physo142511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160014;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 79215 80165 . + . ID=Physo142511;Parent=Physo142511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 79215 80165 . + 0 ID=Physo142511;Parent=Physo142511;rank=1 scaffold_116 . exon 79215 80165 . + . ID=Physo142511.1;Parent=Physo142511;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 80521 81333 . - . ID=Physo142512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160015;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 80521 81333 . - . ID=Physo142512;Parent=Physo142512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 80521 81333 . - 0 ID=Physo142512;Parent=Physo142512;rank=1 scaffold_116 . exon 80521 81333 . - . ID=Physo142512.1;Parent=Physo142512;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 81827 82807 . - . ID=Physo142513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160016;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 81827 82807 . - . ID=Physo142513;Parent=Physo142513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 81827 82807 . - 0 ID=Physo142513;Parent=Physo142513;rank=1 scaffold_116 . exon 81827 82807 . - . ID=Physo142513.1;Parent=Physo142513;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 85349 86288 . - . ID=Physo142514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160017;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 85349 86288 . - . ID=Physo142514;Parent=Physo142514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 85349 85671 . - 0 ID=Physo142514;Parent=Physo142514;rank=2 scaffold_116 . exon 85349 85671 . - . ID=Physo142514.2;Parent=Physo142514;constitutive=1;ensembl_phase=1;rank=2 scaffold_116 . CDS 85796 86288 . - 0 ID=Physo142514;Parent=Physo142514;rank=1 scaffold_116 . exon 85796 86288 . - . ID=Physo142514.1;Parent=Physo142514;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . biological_region 88511 88512 0.999 - . logic_name=eponine scaffold_116 . biological_region 92721 92724 0.999 - . logic_name=eponine scaffold_116 . biological_region 93252 93256 0.999 + . logic_name=eponine scaffold_116 . repeat_region 95488 95540 . ? . description=trf scaffold_116 . biological_region 95703 95709 0.999 - . logic_name=eponine scaffold_116 . biological_region 96215 96219 0.999 + . logic_name=eponine scaffold_116 ensembl protein_coding_gene 89015 91123 . - . ID=Physo142515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160018;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 89015 91123 . - . ID=Physo142515;Parent=Physo142515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 89015 91123 . - 0 ID=Physo142515;Parent=Physo142515;rank=1 scaffold_116 . exon 89015 91123 . - . ID=Physo142515.1;Parent=Physo142515;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 91448 93456 . - . ID=Physo142516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160019;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 91448 93456 . - . ID=Physo142516;Parent=Physo142516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 91448 92817 . - 0 ID=Physo142516;Parent=Physo142516;rank=3 scaffold_116 . exon 91448 92817 . - . ID=Physo142516.3;Parent=Physo142516;constitutive=1;ensembl_phase=1;rank=3 scaffold_116 . CDS 92895 93052 . - 0 ID=Physo142516;Parent=Physo142516;rank=2 scaffold_116 . exon 92895 93052 . - . ID=Physo142516.2;Parent=Physo142516;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_116 . CDS 93143 93456 . - 0 ID=Physo142516;Parent=Physo142516;rank=1 scaffold_116 . exon 93143 93456 . - . ID=Physo142516.1;Parent=Physo142516;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_116 ensembl protein_coding_gene 96220 99012 . + . ID=Physo142517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160020;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 96220 99012 . + . ID=Physo142517;Parent=Physo142517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 96220 97522 . + 0 ID=Physo142517;Parent=Physo142517;rank=1 scaffold_116 . exon 96220 97522 . + . ID=Physo142517.1;Parent=Physo142517;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . CDS 97935 97995 . + 0 ID=Physo142517;Parent=Physo142517;rank=2 scaffold_116 . CDS 98118 99012 . + 0 ID=Physo142517;Parent=Physo142517;rank=3 scaffold_116 . repeat_region 100160 100515 . + . description=GypsyPi-1c_I-int scaffold_116 . repeat_region 101377 101392 . ? . description=dust scaffold_116 . repeat_region 103672 103680 . ? . description=dust scaffold_116 . exon 97935 97995 . + . ID=Physo142517.2;Parent=Physo142517;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_116 . exon 98118 99012 . + . ID=Physo142517.3;Parent=Physo142517;constitutive=1;ensembl_phase=2;rank=3 scaffold_116 ensembl protein_coding_gene 99965 101260 . + . ID=Physo142518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160021;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 99965 101260 . + . ID=Physo142518;Parent=Physo142518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 99965 101260 . + 0 ID=Physo142518;Parent=Physo142518;rank=1 scaffold_116 . exon 99965 101260 . + . ID=Physo142518.1;Parent=Physo142518;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 104292 104783 . + . ID=Physo142519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160022;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 104292 104783 . + . ID=Physo142519;Parent=Physo142519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 104292 104783 . + 0 ID=Physo142519;Parent=Physo142519;rank=1 scaffold_116 . exon 104292 104783 . + . ID=Physo142519.1;Parent=Physo142519;constitutive=1;rank=1 scaffold_116 . biological_region 106486 106487 0.999 + . logic_name=eponine scaffold_116 . biological_region 110548 110551 0.999 + . logic_name=eponine scaffold_116 . biological_region 110628 110632 0.999 + . logic_name=eponine scaffold_116 . repeat_region 110688 110717 . ? . description=trf scaffold_116 . biological_region 110757 110760 0.999 + . logic_name=eponine scaffold_116 . repeat_region 111016 111131 . ? . description=trf scaffold_116 . repeat_region 111019 111135 . ? . description=trf scaffold_116 . repeat_region 111058 111144 . ? . description=trf scaffold_116 . biological_region 111403 111407 0.999 + . logic_name=eponine scaffold_116 ensembl protein_coding_gene 110635 113082 . + . ID=Physo142520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160023;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 110635 113082 . + . ID=Physo142520;Parent=Physo142520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 110635 113082 . + 0 ID=Physo142520;Parent=Physo142520;rank=1 scaffold_116 . exon 110635 113082 . + . ID=Physo142520.1;Parent=Physo142520;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 115034 115570 . + . ID=Physo142521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160024;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 115034 115570 . + . ID=Physo142521;Parent=Physo142521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 115034 115570 . + 0 ID=Physo142521;Parent=Physo142521;rank=1 scaffold_116 . exon 115034 115570 . + . ID=Physo142521.1;Parent=Physo142521;constitutive=1;rank=1 scaffold_116 . repeat_region 116857 116866 . ? . description=dust scaffold_116 . repeat_region 117402 117409 . ? . description=dust scaffold_116 . repeat_region 122944 122960 . ? . description=dust scaffold_116 ensembl protein_coding_gene 119093 120068 . + . ID=Physo142522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160025;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 119093 120068 . + . ID=Physo142522;Parent=Physo142522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 119093 119326 . + 0 ID=Physo142522;Parent=Physo142522;rank=1 scaffold_116 . exon 119093 119326 . + . ID=Physo142522.1;Parent=Physo142522;constitutive=1;rank=1 scaffold_116 . CDS 119498 119835 . + 0 ID=Physo142522;Parent=Physo142522;rank=2 scaffold_116 . exon 119498 119835 . + . ID=Physo142522.2;Parent=Physo142522;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_116 . CDS 119912 119997 . + 0 ID=Physo142522;Parent=Physo142522;rank=3 scaffold_116 . exon 119912 119997 . + . ID=Physo142522.3;Parent=Physo142522;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_116 . CDS 120022 120068 . + 0 ID=Physo142522;Parent=Physo142522;rank=4 scaffold_116 . exon 120022 120068 . + . ID=Physo142522.4;Parent=Physo142522;constitutive=1;ensembl_phase=1;rank=4 scaffold_116 . biological_region 128459 128462 0.999 + . logic_name=eponine scaffold_116 . biological_region 131700 131705 0.999 + . logic_name=eponine scaffold_116 ensembl protein_coding_gene 128371 128715 . + . ID=Physo122889;biotype=protein_coding;external_name=estExt_Genewise1.C_1160032;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 128371 128715 . + . ID=Physo122889;Parent=Physo122889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . exon 128371 128715 . + . ID=Physo122889.1;Parent=Physo122889;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_116 . CDS 128435 128515 . + 0 ID=Physo122889;Parent=Physo122889;rank=1 scaffold_116 ensembl protein_coding_gene 126816 127838 . + . ID=Physo142523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160026;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 126816 127838 . + . ID=Physo142523;Parent=Physo142523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 126816 127031 . + 0 ID=Physo142523;Parent=Physo142523;rank=1 scaffold_116 . exon 126816 127031 . + . ID=Physo142523.1;Parent=Physo142523;constitutive=1;rank=1 scaffold_116 . CDS 127099 127350 . + 0 ID=Physo142523;Parent=Physo142523;rank=2 scaffold_116 . exon 127099 127350 . + . ID=Physo142523.2;Parent=Physo142523;constitutive=1;rank=2 scaffold_116 . CDS 127424 127486 . + 0 ID=Physo142523;Parent=Physo142523;rank=3 scaffold_116 . exon 127424 127486 . + . ID=Physo142523.3;Parent=Physo142523;constitutive=1;rank=3 scaffold_116 . CDS 127559 127642 . + 0 ID=Physo142523;Parent=Physo142523;rank=4 scaffold_116 . exon 127559 127642 . + . ID=Physo142523.4;Parent=Physo142523;constitutive=1;rank=4 scaffold_116 . CDS 127704 127838 . + 0 ID=Physo142523;Parent=Physo142523;rank=5 scaffold_116 . exon 127704 127838 . + . ID=Physo142523.5;Parent=Physo142523;constitutive=1;rank=5 scaffold_116 ensembl protein_coding_gene 129549 135949 . - . ID=Physo158551;biotype=protein_coding;external_name=C_scaffold_116000003;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 129549 135949 . - . ID=Physo158551;Parent=Physo158551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 129549 130472 . - 0 ID=Physo158551;Parent=Physo158551;rank=14 scaffold_116 . exon 129549 130472 . - . ID=Physo158551.14;Parent=Physo158551;constitutive=1;rank=14 scaffold_116 . CDS 130494 130848 . - 0 ID=Physo158551;Parent=Physo158551;rank=13 scaffold_116 . exon 130494 130848 . - . ID=Physo158551.13;Parent=Physo158551;constitutive=1;ensembl_phase=2;rank=13 scaffold_116 . CDS 131094 131668 . - 0 ID=Physo158551;Parent=Physo158551;rank=12 scaffold_116 . exon 131094 131668 . - . ID=Physo158551.12;Parent=Physo158551;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_116 . CDS 131708 132599 . - 0 ID=Physo158551;Parent=Physo158551;rank=11 scaffold_116 . exon 131708 132599 . - . ID=Physo158551.11;Parent=Physo158551;constitutive=1;ensembl_phase=2;rank=11 scaffold_116 . CDS 132624 133073 . - 0 ID=Physo158551;Parent=Physo158551;rank=10 scaffold_116 . exon 132624 133073 . - . ID=Physo158551.10;Parent=Physo158551;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_116 . CDS 133131 133286 . - 0 ID=Physo158551;Parent=Physo158551;rank=9 scaffold_116 . exon 133131 133286 . - . ID=Physo158551.9;Parent=Physo158551;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_116 . CDS 133398 133641 . - 0 ID=Physo158551;Parent=Physo158551;rank=8 scaffold_116 . exon 133398 133641 . - . ID=Physo158551.8;Parent=Physo158551;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_116 . CDS 133705 133932 . - 0 ID=Physo158551;Parent=Physo158551;rank=7 scaffold_116 . exon 133705 133932 . - . ID=Physo158551.7;Parent=Physo158551;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_116 . CDS 133987 134187 . - 0 ID=Physo158551;Parent=Physo158551;rank=6 scaffold_116 . exon 133987 134187 . - . ID=Physo158551.6;Parent=Physo158551;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_116 . CDS 134215 134599 . - 0 ID=Physo158551;Parent=Physo158551;rank=5 scaffold_116 . exon 134215 134599 . - . ID=Physo158551.5;Parent=Physo158551;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_116 . CDS 134693 135074 . - 0 ID=Physo158551;Parent=Physo158551;rank=4 scaffold_116 . exon 134693 135074 . - . ID=Physo158551.4;Parent=Physo158551;constitutive=1;ensembl_phase=2;rank=4 scaffold_116 . CDS 135111 135273 . - 0 ID=Physo158551;Parent=Physo158551;rank=3 scaffold_116 . CDS 135518 135598 . - 0 ID=Physo158551;Parent=Physo158551;rank=2 scaffold_116 . CDS 135685 135949 . - 0 ID=Physo158551;Parent=Physo158551;rank=1 scaffold_116 . repeat_region 137935 137982 . + . description=(CTA)n scaffold_116 . repeat_region 137942 137973 . ? . description=dust scaffold_116 . repeat_region 137942 137973 . ? . description=trf scaffold_116 ensembl protein_coding_gene 136070 136459 . + . ID=Physo109479;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1160001;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 136070 136459 . + . ID=Physo109479;Parent=Physo109479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 136070 136117 . + 0 ID=Physo109479;Parent=Physo109479;rank=1 scaffold_116 . exon 136070 136117 . + . ID=Physo109479.1;Parent=Physo109479;constitutive=1;rank=1 scaffold_116 . CDS 136190 136459 . + 0 ID=Physo109479;Parent=Physo109479;rank=2 scaffold_116 . exon 136190 136459 . + . ID=Physo109479.2;Parent=Physo109479;constitutive=1;rank=2 scaffold_116 ensembl protein_coding_gene 136612 138342 . - . ID=Physo142527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160030;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 136612 138342 . - . ID=Physo142527;Parent=Physo142527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 136612 138342 . - 0 ID=Physo142527;Parent=Physo142527;rank=1 scaffold_116 . exon 136612 138342 . - . ID=Physo142527.1;Parent=Physo142527;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 138463 140850 . + . ID=Physo142528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160031;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 138463 140850 . + . ID=Physo142528;Parent=Physo142528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 138463 138559 . + 0 ID=Physo142528;Parent=Physo142528;rank=1 scaffold_116 . exon 138463 138559 . + . ID=Physo142528.1;Parent=Physo142528;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . CDS 138628 139540 . + 0 ID=Physo142528;Parent=Physo142528;rank=2 scaffold_116 . exon 138628 139540 . + . ID=Physo142528.2;Parent=Physo142528;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_116 . CDS 139618 139753 . + 0 ID=Physo142528;Parent=Physo142528;rank=3 scaffold_116 . exon 139618 139753 . + . ID=Physo142528.3;Parent=Physo142528;constitutive=1;ensembl_phase=2;rank=3 scaffold_116 . CDS 139835 140377 . + 0 ID=Physo142528;Parent=Physo142528;rank=4 scaffold_116 . exon 139835 140643 . + . ID=Physo142528.4;Parent=Physo142528;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_116 . exon 140713 140850 . + . ID=Physo142528.5;Parent=Physo142528;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_116 . exon 135111 135273 . - . ID=Physo158551.3;Parent=Physo158551;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_116 . exon 135518 135598 . - . ID=Physo158551.2;Parent=Physo158551;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_116 . exon 135685 135949 . - . ID=Physo158551.1;Parent=Physo158551;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . biological_region 151514 151515 0.999 - . logic_name=eponine scaffold_116 . repeat_region 157725 157738 . ? . description=dust scaffold_116 . repeat_region 162660 162695 . ? . description=trf scaffold_116 . repeat_region 162661 162697 . ? . description=trf scaffold_116 . repeat_region 162661 162755 . ? . description=dust scaffold_116 . repeat_region 162981 163022 . ? . description=trf scaffold_116 . repeat_region 162993 163058 . ? . description=dust scaffold_116 . repeat_region 162993 163058 . ? . description=trf scaffold_116 ensembl protein_coding_gene 155763 156341 . - . ID=Physo142529;biotype=protein_coding;description=PsAvh256 [Source:UniProtKB/TrEMBL%3BAcc:E0W5L9];external_name=estExt_fgenesh1_pg.C_1160032;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 155763 156341 . - . ID=Physo142529;Parent=Physo142529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 155763 156341 . - 0 ID=Physo142529;Parent=Physo142529;rank=1 scaffold_116 . exon 155763 156341 . - . ID=Physo142529.1;Parent=Physo142529;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 158255 159976 . + . ID=Physo142530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160033;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 158255 159976 . + . ID=Physo142530;Parent=Physo142530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 158255 159976 . + 0 ID=Physo142530;Parent=Physo142530;rank=1 scaffold_116 . exon 158255 159976 . + . ID=Physo142530.1;Parent=Physo142530;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 161182 162531 . + . ID=Physo142531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160034;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 161182 162531 . + . ID=Physo142531;Parent=Physo142531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 161182 162531 . + 0 ID=Physo142531;Parent=Physo142531;rank=1 scaffold_116 . exon 161182 162531 . + . ID=Physo142531.1;Parent=Physo142531;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 162642 163394 . - . ID=Physo142532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160035;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 162642 163394 . - . ID=Physo142532;Parent=Physo142532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 162642 163394 . - 0 ID=Physo142532;Parent=Physo142532;rank=1 scaffold_116 . exon 162642 163394 . - . ID=Physo142532.1;Parent=Physo142532;constitutive=1;rank=1 scaffold_116 . biological_region 167326 167330 0.999 + . logic_name=eponine scaffold_116 . biological_region 167353 167353 0.999 - . logic_name=eponine scaffold_116 . biological_region 168137 168137 0.999 - . logic_name=eponine scaffold_116 . biological_region 168467 168472 0.999 + . logic_name=eponine scaffold_116 . biological_region 170599 170603 0.999 + . logic_name=eponine scaffold_116 . biological_region 170625 170629 0.999 - . logic_name=eponine scaffold_116 . biological_region 171206 171210 0.999 + . logic_name=eponine scaffold_116 . biological_region 172067 172067 0.999 - . logic_name=eponine scaffold_116 ensembl protein_coding_gene 163736 165337 . + . ID=Physo142533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160036;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 163736 165337 . + . ID=Physo142533;Parent=Physo142533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 163736 164623 . + 0 ID=Physo142533;Parent=Physo142533;rank=1 scaffold_116 . exon 163736 164623 . + . ID=Physo142533.1;Parent=Physo142533;constitutive=1;rank=1 scaffold_116 . CDS 164672 165337 . + 0 ID=Physo142533;Parent=Physo142533;rank=2 scaffold_116 . exon 164672 165337 . + . ID=Physo142533.2;Parent=Physo142533;constitutive=1;rank=2 scaffold_116 ensembl protein_coding_gene 167571 169189 . + . ID=Physo142534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160037;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 167571 169189 . + . ID=Physo142534;Parent=Physo142534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 167571 167706 . + 0 ID=Physo142534;Parent=Physo142534;rank=1 scaffold_116 . exon 167571 167706 . + . ID=Physo142534.1;Parent=Physo142534;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . CDS 167748 169189 . + 0 ID=Physo142534;Parent=Physo142534;rank=2 scaffold_116 . exon 167748 169189 . + . ID=Physo142534.2;Parent=Physo142534;constitutive=1;ensembl_phase=1;rank=2 scaffold_116 ensembl protein_coding_gene 170709 172295 . + . ID=Physo142535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160038;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 170709 172295 . + . ID=Physo142535;Parent=Physo142535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 170709 172295 . + 0 ID=Physo142535;Parent=Physo142535;rank=1 scaffold_116 . exon 170709 172295 . + . ID=Physo142535.1;Parent=Physo142535;constitutive=1;rank=1 scaffold_116 ensembl protein_coding_gene 172674 175220 . - . ID=Physo142536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160039;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 172674 175220 . - . ID=Physo142536;Parent=Physo142536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 172674 175220 . - 0 ID=Physo142536;Parent=Physo142536;rank=1 scaffold_116 . exon 172674 175220 . - . ID=Physo142536.1;Parent=Physo142536;constitutive=1;rank=1 scaffold_116 . repeat_region 176578 176615 . ? . description=dust scaffold_116 ensembl protein_coding_gene 175934 178504 . + . ID=Physo142537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160040;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 175934 178504 . + . ID=Physo142537;Parent=Physo142537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 175934 178504 . + 0 ID=Physo142537;Parent=Physo142537;rank=1 scaffold_116 . exon 175934 178504 . + . ID=Physo142537.1;Parent=Physo142537;constitutive=1;rank=1 scaffold_116 . biological_region 183685 183687 0.999 + . logic_name=eponine scaffold_116 . repeat_region 189168 189188 . ? . description=trf scaffold_116 . biological_region 189235 189235 0.999 + . logic_name=eponine scaffold_116 . biological_region 190140 190144 0.999 - . logic_name=eponine scaffold_116 ensembl protein_coding_gene 184811 186098 . + . ID=Physo142538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160041;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 184811 186098 . + . ID=Physo142538;Parent=Physo142538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 184811 185321 . + 0 ID=Physo142538;Parent=Physo142538;rank=1 scaffold_116 . exon 184811 185321 . + . ID=Physo142538.1;Parent=Physo142538;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_116 . CDS 185971 186098 . + 0 ID=Physo142538;Parent=Physo142538;rank=2 scaffold_116 . exon 185971 186098 . + . ID=Physo142538.2;Parent=Physo142538;constitutive=1;ensembl_phase=1;rank=2 scaffold_116 ensembl protein_coding_gene 188576 188968 . + . ID=Physo142539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160042;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 188576 188968 . + . ID=Physo142539;Parent=Physo142539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . exon 188576 188968 . + . ID=Physo142539.1;Parent=Physo142539;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_116 . CDS 188577 188942 . + 0 ID=Physo142539;Parent=Physo142539;rank=1 scaffold_116 ensembl protein_coding_gene 189066 190233 . + . ID=Physo142540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160043;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 189066 190233 . + . ID=Physo142540;Parent=Physo142540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . exon 189066 189345 . + . ID=Physo142540.1;Parent=Physo142540;constitutive=1;ensembl_phase=-1;rank=1 scaffold_116 . CDS 189133 189345 . + 0 ID=Physo142540;Parent=Physo142540;rank=1 scaffold_116 . CDS 189412 189684 . + 0 ID=Physo142540;Parent=Physo142540;rank=2 scaffold_116 . exon 189412 189684 . + . ID=Physo142540.2;Parent=Physo142540;constitutive=1;rank=2 scaffold_116 . CDS 189754 190233 . + 0 ID=Physo142540;Parent=Physo142540;rank=3 scaffold_116 . exon 189754 190233 . + . ID=Physo142540.3;Parent=Physo142540;constitutive=1;rank=3 scaffold_116 . repeat_region 194580 194831 . ? . description=dust scaffold_116 . repeat_region 196777 200094 . ? . description=dust scaffold_116 . repeat_region 200120 200183 . ? . description=dust scaffold_116 . repeat_region 200658 200680 . ? . description=dust scaffold_116 ensembl protein_coding_gene 195923 200833 . - . ID=Physo142541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1160044;logic_name=jgi_physo1_1 scaffold_116 ensembl transcript 195923 200833 . - . ID=Physo142541;Parent=Physo142541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_116 . CDS 195923 196219 . - 0 ID=Physo142541;Parent=Physo142541;rank=4 scaffold_116 . exon 195923 196219 . - . ID=Physo142541.4;Parent=Physo142541;constitutive=1;rank=4 scaffold_116 . CDS 196397 196610 . - 0 ID=Physo142541;Parent=Physo142541;rank=3 scaffold_116 . exon 196397 196610 . - . ID=Physo142541.3;Parent=Physo142541;constitutive=1;ensembl_phase=2;rank=3 scaffold_116 . CDS 200110 200731 . - 0 ID=Physo142541;Parent=Physo142541;rank=2 scaffold_116 . exon 200110 200731 . - . ID=Physo142541.2;Parent=Physo142541;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_116 . CDS 200791 200833 . - 0 ID=Physo142541;Parent=Physo142541;rank=1 scaffold_116 . exon 200791 200833 . - . ID=Physo142541.1;Parent=Physo142541;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_119 1 202588 scaffold_119 . biological_region 81 85 0.999 + . logic_name=eponine scaffold_119 . biological_region 1265 1267 0.999 + . logic_name=eponine scaffold_119 . biological_region 2533 2535 0.999 + . logic_name=eponine scaffold_119 . biological_region 2541 2547 0.999 - . logic_name=eponine scaffold_119 . biological_region 3102 3108 0.999 + . logic_name=eponine scaffold_119 . biological_region 3722 3725 0.999 - . logic_name=eponine scaffold_119 . biological_region 3861 3865 0.999 - . logic_name=eponine scaffold_119 . repeat_region 6439 6465 . ? . description=dust scaffold_119 . biological_region 7868 7871 0.999 - . logic_name=eponine scaffold_119 ensembl tRNA_gene 311 382 . + . ID=EPrPSOG00000000045;biotype=tRNA;description=tRNA-His for anticodon GUG [Source:TRNASCAN_SE%3BAcc:tRNA-His];external_name=tRNA-His;logic_name=ncrna_eg scaffold_119 ensembl transcript 311 382 . + . ID=EPrPSOT00000000045;Parent=EPrPSOG00000000045;biotype=tRNA;logic_name=ncrna_eg scaffold_119 ensembl tRNA_gene 237 309 . + . ID=EPrPSOG00000000215;biotype=tRNA;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_119 ensembl transcript 237 309 . + . ID=EPrPSOT00000000215;Parent=EPrPSOG00000000215;biotype=tRNA;logic_name=ncrna_eg scaffold_119 . exon 311 382 . + . ID=EPrPSOE00000000045;Parent=EPrPSOT00000000045;constitutive=1;rank=1 scaffold_119 . exon 237 309 . + . ID=EPrPSOE00000000215;Parent=EPrPSOT00000000215;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 ensembl protein_coding_gene 1185 2570 . + . ID=Physo109488;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1190001;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 1185 2570 . + . ID=Physo109488;Parent=Physo109488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . exon 1185 1322 . + . ID=Physo109488.1;Parent=Physo109488;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_119 . CDS 1237 1322 . + 0 ID=Physo109488;Parent=Physo109488;rank=1 scaffold_119 . CDS 1525 1662 . + 0 ID=Physo109488;Parent=Physo109488;rank=2 scaffold_119 . exon 1525 1662 . + . ID=Physo109488.2;Parent=Physo109488;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_119 . CDS 1748 2570 . + 0 ID=Physo109488;Parent=Physo109488;rank=3 scaffold_119 . exon 1748 2570 . + . ID=Physo109488.3;Parent=Physo109488;constitutive=1;ensembl_phase=2;rank=3 scaffold_119 ensembl protein_coding_gene 3595 6327 . + . ID=Physo142632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190002;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 3595 6327 . + . ID=Physo142632;Parent=Physo142632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 3595 6327 . + 0 ID=Physo142632;Parent=Physo142632;rank=1 scaffold_119 . exon 3595 6327 . + . ID=Physo142632.1;Parent=Physo142632;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 7760 10150 . + . ID=Physo142633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190003;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 7760 10150 . + . ID=Physo142633;Parent=Physo142633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 7760 10150 . + 0 ID=Physo142633;Parent=Physo142633;rank=1 scaffold_119 . exon 7760 10150 . + . ID=Physo142633.1;Parent=Physo142633;constitutive=1;rank=1 scaffold_119 . repeat_region 18158 18185 . ? . description=trf scaffold_119 . repeat_region 18158 18187 . ? . description=trf scaffold_119 . repeat_region 18875 18894 . ? . description=trf scaffold_119 ensembl protein_coding_gene 10468 11541 . - . ID=Physo142634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190004;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 10468 11541 . - . ID=Physo142634;Parent=Physo142634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 10468 11523 . - 0 ID=Physo142634;Parent=Physo142634;rank=1 scaffold_119 . exon 10468 11541 . - . ID=Physo142634.1;Parent=Physo142634;constitutive=1;ensembl_phase=-1;rank=1 scaffold_119 ensembl protein_coding_gene 18038 21643 . + . ID=Physo142636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190006;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 18038 21643 . + . ID=Physo142636;Parent=Physo142636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 18038 20968 . + 0 ID=Physo142636;Parent=Physo142636;rank=1 scaffold_119 . exon 18038 20968 . + . ID=Physo142636.1;Parent=Physo142636;constitutive=1;rank=1 scaffold_119 . CDS 21048 21498 . + 0 ID=Physo142636;Parent=Physo142636;rank=2 scaffold_119 . CDS 21588 21643 . + 0 ID=Physo142636;Parent=Physo142636;rank=3 scaffold_119 ensembl protein_coding_gene 13502 17665 . - . ID=Physo158580;biotype=protein_coding;external_name=C_scaffold_119000001;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 13502 17665 . - . ID=Physo158580;Parent=Physo158580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 13502 13741 . - 0 ID=Physo158580;Parent=Physo158580;rank=12 scaffold_119 . exon 13502 13741 . - . ID=Physo158580.12;Parent=Physo158580;constitutive=1;rank=12 scaffold_119 . CDS 13822 14347 . - 0 ID=Physo158580;Parent=Physo158580;rank=11 scaffold_119 . exon 13822 14347 . - . ID=Physo158580.11;Parent=Physo158580;constitutive=1;ensembl_phase=2;rank=11 scaffold_119 . CDS 14418 14602 . - 0 ID=Physo158580;Parent=Physo158580;rank=10 scaffold_119 . exon 14418 14602 . - . ID=Physo158580.10;Parent=Physo158580;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_119 . CDS 14687 15040 . - 0 ID=Physo158580;Parent=Physo158580;rank=9 scaffold_119 . exon 14687 15040 . - . ID=Physo158580.9;Parent=Physo158580;constitutive=1;rank=9 scaffold_119 . CDS 15121 15225 . - 0 ID=Physo158580;Parent=Physo158580;rank=8 scaffold_119 . exon 15121 15225 . - . ID=Physo158580.8;Parent=Physo158580;constitutive=1;rank=8 scaffold_119 . CDS 15333 15416 . - 0 ID=Physo158580;Parent=Physo158580;rank=7 scaffold_119 . exon 15333 15416 . - . ID=Physo158580.7;Parent=Physo158580;constitutive=1;rank=7 scaffold_119 . CDS 15774 16027 . - 0 ID=Physo158580;Parent=Physo158580;rank=6 scaffold_119 . exon 15774 16027 . - . ID=Physo158580.6;Parent=Physo158580;constitutive=1;ensembl_phase=1;rank=6 scaffold_119 . CDS 16116 16292 . - 0 ID=Physo158580;Parent=Physo158580;rank=5 scaffold_119 . exon 16116 16292 . - . ID=Physo158580.5;Parent=Physo158580;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_119 . CDS 16365 16917 . - 0 ID=Physo158580;Parent=Physo158580;rank=4 scaffold_119 . exon 16365 16917 . - . ID=Physo158580.4;Parent=Physo158580;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_119 . CDS 17004 17067 . - 0 ID=Physo158580;Parent=Physo158580;rank=3 scaffold_119 . exon 17004 17067 . - . ID=Physo158580.3;Parent=Physo158580;constitutive=1;ensembl_phase=2;rank=3 scaffold_119 . CDS 17147 17295 . - 0 ID=Physo158580;Parent=Physo158580;rank=2 scaffold_119 . exon 17147 17295 . - . ID=Physo158580.2;Parent=Physo158580;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_119 . CDS 17375 17665 . - 0 ID=Physo158580;Parent=Physo158580;rank=1 scaffold_119 . exon 17375 17665 . - . ID=Physo158580.1;Parent=Physo158580;constitutive=1;rank=1 scaffold_119 . biological_region 20140 20141 0.999 + . logic_name=eponine scaffold_119 . biological_region 24132 24135 0.999 - . logic_name=eponine scaffold_119 . biological_region 25380 25384 0.999 + . logic_name=eponine scaffold_119 . repeat_region 25865 25872 . ? . description=dust scaffold_119 . biological_region 26563 26565 0.999 - . logic_name=eponine scaffold_119 ensembl protein_coding_gene 22730 23818 . - . ID=Physo123009;biotype=protein_coding;external_name=estExt_Genewise1.C_1190009;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 22730 23818 . - . ID=Physo123009;Parent=Physo123009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 22730 22934 . - 0 ID=Physo123009;Parent=Physo123009;rank=4 scaffold_119 . exon 22730 22934 . - . ID=Physo123009.4;Parent=Physo123009;constitutive=1;ensembl_phase=2;rank=4 scaffold_119 . CDS 23021 23395 . - 0 ID=Physo123009;Parent=Physo123009;rank=3 scaffold_119 . exon 23021 23395 . - . ID=Physo123009.3;Parent=Physo123009;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_119 . CDS 23469 23551 . - 0 ID=Physo123009;Parent=Physo123009;rank=2 scaffold_119 . exon 23469 23551 . - . ID=Physo123009.2;Parent=Physo123009;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_119 . CDS 23633 23800 . - 0 ID=Physo123009;Parent=Physo123009;rank=1 scaffold_119 . exon 23633 23818 . - . ID=Physo123009.1;Parent=Physo123009;constitutive=1;ensembl_phase=-1;rank=1 scaffold_119 . exon 21048 21498 . + . ID=Physo142636.2;Parent=Physo142636;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_119 . exon 21588 21643 . + . ID=Physo142636.3;Parent=Physo142636;constitutive=1;ensembl_phase=1;rank=3 scaffold_119 ensembl protein_coding_gene 23996 25678 . - . ID=Physo142639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190009;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 23996 25678 . - . ID=Physo142639;Parent=Physo142639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 23996 24388 . - 0 ID=Physo142639;Parent=Physo142639;rank=6 scaffold_119 . exon 23996 24388 . - . ID=Physo142639.6;Parent=Physo142639;constitutive=1;rank=6 scaffold_119 . CDS 24480 24592 . - 0 ID=Physo142639;Parent=Physo142639;rank=5 scaffold_119 . exon 24480 24592 . - . ID=Physo142639.5;Parent=Physo142639;constitutive=1;ensembl_phase=1;rank=5 scaffold_119 . CDS 24641 24856 . - 0 ID=Physo142639;Parent=Physo142639;rank=4 scaffold_119 . exon 24641 24856 . - . ID=Physo142639.4;Parent=Physo142639;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_119 . CDS 24941 25213 . - 0 ID=Physo142639;Parent=Physo142639;rank=3 scaffold_119 . exon 24941 25213 . - . ID=Physo142639.3;Parent=Physo142639;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_119 . CDS 25273 25497 . - 0 ID=Physo142639;Parent=Physo142639;rank=2 scaffold_119 . exon 25273 25497 . - . ID=Physo142639.2;Parent=Physo142639;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 25558 25678 . - 0 ID=Physo142639;Parent=Physo142639;rank=1 scaffold_119 . exon 25558 25678 . - . ID=Physo142639.1;Parent=Physo142639;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 ensembl protein_coding_gene 26664 30655 . + . ID=Physo142640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190010;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 26664 30655 . + . ID=Physo142640;Parent=Physo142640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 26664 26918 . + 0 ID=Physo142640;Parent=Physo142640;rank=1 scaffold_119 . exon 26664 26918 . + . ID=Physo142640.1;Parent=Physo142640;constitutive=1;rank=1 scaffold_119 . CDS 27007 27585 . + 0 ID=Physo142640;Parent=Physo142640;rank=2 scaffold_119 . exon 27007 27585 . + . ID=Physo142640.2;Parent=Physo142640;constitutive=1;rank=2 scaffold_119 . CDS 27665 28197 . + 0 ID=Physo142640;Parent=Physo142640;rank=3 scaffold_119 . exon 27665 28197 . + . ID=Physo142640.3;Parent=Physo142640;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_119 . CDS 28263 28633 . + 0 ID=Physo142640;Parent=Physo142640;rank=4 scaffold_119 . exon 28263 28633 . + . ID=Physo142640.4;Parent=Physo142640;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_119 . CDS 28755 29125 . + 0 ID=Physo142640;Parent=Physo142640;rank=5 scaffold_119 . exon 28755 29125 . + . ID=Physo142640.5;Parent=Physo142640;constitutive=1;ensembl_phase=1;rank=5 scaffold_119 . CDS 29313 29669 . + 0 ID=Physo142640;Parent=Physo142640;rank=6 scaffold_119 . CDS 29732 30272 . + 0 ID=Physo142640;Parent=Physo142640;rank=7 scaffold_119 . CDS 30414 30655 . + 0 ID=Physo142640;Parent=Physo142640;rank=8 scaffold_119 . repeat_region 35073 36912 . ? . description=trf scaffold_119 . repeat_region 35278 35363 . ? . description=trf scaffold_119 . repeat_region 35563 35644 . ? . description=trf scaffold_119 . repeat_region 35848 35904 . ? . description=trf scaffold_119 . repeat_region 35943 36545 . ? . description=trf scaffold_119 . repeat_region 36132 36188 . ? . description=trf scaffold_119 . repeat_region 36229 36260 . ? . description=trf scaffold_119 . repeat_region 36428 36513 . ? . description=trf scaffold_119 . repeat_region 36713 36798 . ? . description=trf scaffold_119 ensembl protein_coding_gene 32260 34512 . + . ID=Physo109490;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1190003;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 32260 34512 . + . ID=Physo109490;Parent=Physo109490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 32260 34386 . + 0 ID=Physo109490;Parent=Physo109490;rank=1 scaffold_119 . exon 32260 34512 . + . ID=Physo109490.1;Parent=Physo109490;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_119 . exon 29313 29669 . + . ID=Physo142640.6;Parent=Physo142640;constitutive=1;rank=6 scaffold_119 . exon 29732 30272 . + . ID=Physo142640.7;Parent=Physo142640;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_119 . exon 30414 30655 . + . ID=Physo142640.8;Parent=Physo142640;constitutive=1;ensembl_phase=1;rank=8 scaffold_119 ensembl protein_coding_gene 30795 32024 . - . ID=Physo142641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190011;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 30795 32024 . - . ID=Physo142641;Parent=Physo142641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 30795 32024 . - 0 ID=Physo142641;Parent=Physo142641;rank=1 scaffold_119 . exon 30795 32024 . - . ID=Physo142641.1;Parent=Physo142641;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 34568 40313 . - . ID=Physo142643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190013;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 34568 40313 . - . ID=Physo142643;Parent=Physo142643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 34568 35644 . - 0 ID=Physo142643;Parent=Physo142643;rank=8 scaffold_119 . exon 34568 35644 . - . ID=Physo142643.8;Parent=Physo142643;constitutive=1;rank=8 scaffold_119 . CDS 35675 35782 . - 0 ID=Physo142643;Parent=Physo142643;rank=7 scaffold_119 . exon 35675 35782 . - . ID=Physo142643.7;Parent=Physo142643;constitutive=1;rank=7 scaffold_119 . CDS 35959 36066 . - 0 ID=Physo142643;Parent=Physo142643;rank=6 scaffold_119 . exon 35959 36066 . - . ID=Physo142643.6;Parent=Physo142643;constitutive=1;rank=6 scaffold_119 . CDS 36240 36931 . - 0 ID=Physo142643;Parent=Physo142643;rank=5 scaffold_119 . exon 36240 36931 . - . ID=Physo142643.5;Parent=Physo142643;constitutive=1;ensembl_phase=1;rank=5 scaffold_119 . CDS 38321 38749 . - 0 ID=Physo142643;Parent=Physo142643;rank=4 scaffold_119 . exon 38321 38749 . - . ID=Physo142643.4;Parent=Physo142643;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_119 . CDS 38825 39774 . - 0 ID=Physo142643;Parent=Physo142643;rank=3 scaffold_119 . CDS 39821 39937 . - 0 ID=Physo142643;Parent=Physo142643;rank=2 scaffold_119 . CDS 39958 40313 . - 0 ID=Physo142643;Parent=Physo142643;rank=1 scaffold_119 . repeat_region 38701 38741 . ? . description=dust scaffold_119 . repeat_region 38701 38747 . + . description=(CTG)n scaffold_119 . biological_region 39518 39519 0.999 - . logic_name=eponine scaffold_119 . repeat_region 39825 39886 . ? . description=dust scaffold_119 . biological_region 40228 40230 0.999 + . logic_name=eponine scaffold_119 . biological_region 40246 40247 0.999 - . logic_name=eponine scaffold_119 . biological_region 43703 43705 0.999 - . logic_name=eponine scaffold_119 . biological_region 43864 43867 0.999 + . logic_name=eponine scaffold_119 . biological_region 45393 45397 0.999 + . logic_name=eponine scaffold_119 . biological_region 47290 47295 0.999 + . logic_name=eponine scaffold_119 . biological_region 47308 47315 0.999 - . logic_name=eponine scaffold_119 . biological_region 47339 47341 0.999 - . logic_name=eponine scaffold_119 . biological_region 47353 47355 0.999 - . logic_name=eponine scaffold_119 . biological_region 47436 47444 0.999 - . logic_name=eponine scaffold_119 . biological_region 47493 47500 0.999 + . logic_name=eponine scaffold_119 . biological_region 47609 47615 0.999 - . logic_name=eponine scaffold_119 . biological_region 47967 47970 0.999 + . logic_name=eponine scaffold_119 . biological_region 48085 48089 0.999 + . logic_name=eponine scaffold_119 ensembl protein_coding_gene 44157 44787 . + . ID=Physo109491;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1190004;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 44157 44787 . + . ID=Physo109491;Parent=Physo109491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . exon 44157 44787 . + . ID=Physo109491.1;Parent=Physo109491;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_119 . CDS 44189 44605 . + 0 ID=Physo109491;Parent=Physo109491;rank=1 scaffold_119 . exon 38825 39774 . - . ID=Physo142643.3;Parent=Physo142643;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_119 . exon 39821 39937 . - . ID=Physo142643.2;Parent=Physo142643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_119 . exon 39958 40313 . - . ID=Physo142643.1;Parent=Physo142643;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_119 ensembl protein_coding_gene 41947 43949 . - . ID=Physo142644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190014;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 41947 43949 . - . ID=Physo142644;Parent=Physo142644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 41947 43488 . - 0 ID=Physo142644;Parent=Physo142644;rank=2 scaffold_119 . exon 41947 43488 . - . ID=Physo142644.2;Parent=Physo142644;constitutive=1;rank=2 scaffold_119 . CDS 43572 43949 . - 0 ID=Physo142644;Parent=Physo142644;rank=1 scaffold_119 . exon 43572 43949 . - . ID=Physo142644.1;Parent=Physo142644;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 45342 47307 . - . ID=Physo158591;biotype=protein_coding;external_name=C_scaffold_119000012;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 45342 47307 . - . ID=Physo158591;Parent=Physo158591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 45342 45484 . - 0 ID=Physo158591;Parent=Physo158591;rank=8 scaffold_119 . exon 45342 45484 . - . ID=Physo158591.8;Parent=Physo158591;constitutive=1;ensembl_phase=1;rank=8 scaffold_119 . CDS 45521 45573 . - 0 ID=Physo158591;Parent=Physo158591;rank=7 scaffold_119 . exon 45521 45573 . - . ID=Physo158591.7;Parent=Physo158591;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_119 . CDS 45652 45776 . - 0 ID=Physo158591;Parent=Physo158591;rank=6 scaffold_119 . exon 45652 45776 . - . ID=Physo158591.6;Parent=Physo158591;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_119 . CDS 45852 46181 . - 0 ID=Physo158591;Parent=Physo158591;rank=5 scaffold_119 . exon 45852 46181 . - . ID=Physo158591.5;Parent=Physo158591;constitutive=1;rank=5 scaffold_119 . CDS 46250 46536 . - 0 ID=Physo158591;Parent=Physo158591;rank=4 scaffold_119 . exon 46250 46536 . - . ID=Physo158591.4;Parent=Physo158591;constitutive=1;ensembl_phase=1;rank=4 scaffold_119 . CDS 46710 46875 . - 0 ID=Physo158591;Parent=Physo158591;rank=3 scaffold_119 . exon 46710 46875 . - . ID=Physo158591.3;Parent=Physo158591;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_119 . CDS 46970 47104 . - 0 ID=Physo158591;Parent=Physo158591;rank=2 scaffold_119 . exon 46970 47104 . - . ID=Physo158591.2;Parent=Physo158591;constitutive=1;rank=2 scaffold_119 . CDS 47203 47307 . - 0 ID=Physo158591;Parent=Physo158591;rank=1 scaffold_119 . exon 47203 47307 . - . ID=Physo158591.1;Parent=Physo158591;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 48516 49892 . + . ID=Physo109493;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1190006;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 48516 49892 . + . ID=Physo109493;Parent=Physo109493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 48516 49694 . + 0 ID=Physo109493;Parent=Physo109493;rank=1 scaffold_119 . exon 48516 49892 . + . ID=Physo109493.1;Parent=Physo109493;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_119 ensembl protein_coding_gene 53921 55522 . + . ID=Physo142649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190019;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 53921 55522 . + . ID=Physo142649;Parent=Physo142649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 53921 54105 . + 0 ID=Physo142649;Parent=Physo142649;rank=1 scaffold_119 . exon 53921 54105 . + . ID=Physo142649.1;Parent=Physo142649;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_119 . CDS 54182 54232 . + 0 ID=Physo142649;Parent=Physo142649;rank=2 scaffold_119 . exon 54182 54232 . + . ID=Physo142649.2;Parent=Physo142649;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_119 . CDS 54307 54457 . + 0 ID=Physo142649;Parent=Physo142649;rank=3 scaffold_119 . exon 54307 54457 . + . ID=Physo142649.3;Parent=Physo142649;constitutive=1;ensembl_phase=2;rank=3 scaffold_119 . CDS 54539 54911 . + 0 ID=Physo142649;Parent=Physo142649;rank=4 scaffold_119 . exon 54539 54911 . + . ID=Physo142649.4;Parent=Physo142649;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_119 . CDS 54994 55314 . + 0 ID=Physo142649;Parent=Physo142649;rank=5 scaffold_119 . exon 54994 55314 . + . ID=Physo142649.5;Parent=Physo142649;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_119 . CDS 55383 55522 . + 0 ID=Physo142649;Parent=Physo142649;rank=6 scaffold_119 . exon 55383 55522 . + . ID=Physo142649.6;Parent=Physo142649;constitutive=1;ensembl_phase=1;rank=6 scaffold_119 ensembl protein_coding_gene 56310 57786 . - . ID=Physo158593;biotype=protein_coding;external_name=C_scaffold_119000014;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 56310 57786 . - . ID=Physo158593;Parent=Physo158593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 56310 56394 . - 0 ID=Physo158593;Parent=Physo158593;rank=8 scaffold_119 . exon 56310 56394 . - . ID=Physo158593.8;Parent=Physo158593;constitutive=1;ensembl_phase=2;rank=8 scaffold_119 . CDS 56462 56529 . - 0 ID=Physo158593;Parent=Physo158593;rank=7 scaffold_119 . exon 56462 56529 . - . ID=Physo158593.7;Parent=Physo158593;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_119 . CDS 56943 57031 . - 0 ID=Physo158593;Parent=Physo158593;rank=6 scaffold_119 . exon 56943 57031 . - . ID=Physo158593.6;Parent=Physo158593;constitutive=1;ensembl_phase=1;rank=6 scaffold_119 . CDS 57092 57155 . - 0 ID=Physo158593;Parent=Physo158593;rank=5 scaffold_119 . exon 57092 57155 . - . ID=Physo158593.5;Parent=Physo158593;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_119 . CDS 57371 57454 . - 0 ID=Physo158593;Parent=Physo158593;rank=4 scaffold_119 . exon 57371 57454 . - . ID=Physo158593.4;Parent=Physo158593;constitutive=1;rank=4 scaffold_119 . CDS 57521 57547 . - 0 ID=Physo158593;Parent=Physo158593;rank=3 scaffold_119 . exon 57521 57547 . - . ID=Physo158593.3;Parent=Physo158593;constitutive=1;rank=3 scaffold_119 . CDS 57604 57654 . - 0 ID=Physo158593;Parent=Physo158593;rank=2 scaffold_119 . exon 57604 57654 . - . ID=Physo158593.2;Parent=Physo158593;constitutive=1;rank=2 scaffold_119 . CDS 57721 57786 . - 0 ID=Physo158593;Parent=Physo158593;rank=1 scaffold_119 . exon 57721 57786 . - . ID=Physo158593.1;Parent=Physo158593;constitutive=1;rank=1 scaffold_119 . repeat_region 61175 61202 . ? . description=trf scaffold_119 . biological_region 61699 61703 0.999 + . logic_name=eponine scaffold_119 . biological_region 61864 61866 0.999 - . logic_name=eponine scaffold_119 . biological_region 63405 63407 0.999 + . logic_name=eponine scaffold_119 . biological_region 64668 64670 0.999 + . logic_name=eponine scaffold_119 . biological_region 64781 64786 0.999 - . logic_name=eponine scaffold_119 . biological_region 65134 65134 0.999 - . logic_name=eponine scaffold_119 ensembl protein_coding_gene 59654 60678 . - . ID=Physo109494;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1190007;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 59654 60678 . - . ID=Physo109494;Parent=Physo109494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . exon 59654 60310 . - . ID=Physo109494.3;Parent=Physo109494;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_119 . CDS 59697 60310 . - 0 ID=Physo109494;Parent=Physo109494;rank=3 scaffold_119 . CDS 60408 60500 . - 0 ID=Physo109494;Parent=Physo109494;rank=2 scaffold_119 . exon 60408 60500 . - . ID=Physo109494.2;Parent=Physo109494;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 60610 60655 . - 0 ID=Physo109494;Parent=Physo109494;rank=1 scaffold_119 . exon 60610 60678 . - . ID=Physo109494.1;Parent=Physo109494;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_119 ensembl protein_coding_gene 61676 63109 . + . ID=Physo142653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190023;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 61676 63109 . + . ID=Physo142653;Parent=Physo142653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 61676 63109 . + 0 ID=Physo142653;Parent=Physo142653;rank=1 scaffold_119 . exon 61676 63109 . + . ID=Physo142653.1;Parent=Physo142653;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 63426 68365 . - . ID=Physo142654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190024;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 63426 68365 . - . ID=Physo142654;Parent=Physo142654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 63426 64967 . - 0 ID=Physo142654;Parent=Physo142654;rank=6 scaffold_119 . exon 63426 64967 . - . ID=Physo142654.6;Parent=Physo142654;constitutive=1;rank=6 scaffold_119 . CDS 65053 65186 . - 0 ID=Physo142654;Parent=Physo142654;rank=5 scaffold_119 . exon 65053 65186 . - . ID=Physo142654.5;Parent=Physo142654;constitutive=1;ensembl_phase=1;rank=5 scaffold_119 . CDS 65336 65412 . - 0 ID=Physo142654;Parent=Physo142654;rank=4 scaffold_119 . exon 65336 65412 . - . ID=Physo142654.4;Parent=Physo142654;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_119 . CDS 65583 65776 . - 0 ID=Physo142654;Parent=Physo142654;rank=3 scaffold_119 . exon 65583 65776 . - . ID=Physo142654.3;Parent=Physo142654;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_119 . CDS 65852 67564 . - 0 ID=Physo142654;Parent=Physo142654;rank=2 scaffold_119 . exon 65852 67564 . - . ID=Physo142654.2;Parent=Physo142654;constitutive=1;rank=2 scaffold_119 . CDS 67652 68365 . - 0 ID=Physo142654;Parent=Physo142654;rank=1 scaffold_119 ensembl protein_coding_gene 57926 59558 . + . ID=Physo158594;biotype=protein_coding;external_name=C_scaffold_119000015;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 57926 59558 . + . ID=Physo158594;Parent=Physo158594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 57926 58122 . + 0 ID=Physo158594;Parent=Physo158594;rank=1 scaffold_119 . exon 57926 58122 . + . ID=Physo158594.1;Parent=Physo158594;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_119 . CDS 58222 58338 . + 0 ID=Physo158594;Parent=Physo158594;rank=2 scaffold_119 . exon 58222 58338 . + . ID=Physo158594.2;Parent=Physo158594;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_119 . CDS 58693 59149 . + 0 ID=Physo158594;Parent=Physo158594;rank=3 scaffold_119 . exon 58693 59149 . + . ID=Physo158594.3;Parent=Physo158594;constitutive=1;ensembl_phase=2;rank=3 scaffold_119 . CDS 59229 59558 . + 0 ID=Physo158594;Parent=Physo158594;rank=4 scaffold_119 . exon 59229 59558 . + . ID=Physo158594.4;Parent=Physo158594;constitutive=1;rank=4 scaffold_119 . repeat_region 73950 73999 . ? . description=dust scaffold_119 ensembl protein_coding_gene 76533 77485 . + . ID=Physo109495;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1190008;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 76533 77485 . + . ID=Physo109495;Parent=Physo109495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 76533 76744 . + 0 ID=Physo109495;Parent=Physo109495;rank=1 scaffold_119 . exon 76533 76744 . + . ID=Physo109495.1;Parent=Physo109495;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_119 . CDS 76822 76940 . + 0 ID=Physo109495;Parent=Physo109495;rank=2 scaffold_119 . exon 76822 76940 . + . ID=Physo109495.2;Parent=Physo109495;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_119 . CDS 77017 77203 . + 0 ID=Physo109495;Parent=Physo109495;rank=3 scaffold_119 . exon 77017 77203 . + . ID=Physo109495.3;Parent=Physo109495;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_119 . CDS 77248 77485 . + 0 ID=Physo109495;Parent=Physo109495;rank=4 scaffold_119 . exon 67652 68365 . - . ID=Physo142654.1;Parent=Physo142654;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 74058 75758 . + . ID=Physo142655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190025;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 74058 75758 . + . ID=Physo142655;Parent=Physo142655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 74058 75758 . + 0 ID=Physo142655;Parent=Physo142655;rank=1 scaffold_119 . exon 74058 75758 . + . ID=Physo142655.1;Parent=Physo142655;constitutive=1;rank=1 scaffold_119 . biological_region 79586 79592 0.999 + . logic_name=eponine scaffold_119 . repeat_region 79587 79677 . ? . description=trf scaffold_119 . biological_region 79610 79616 0.999 + . logic_name=eponine scaffold_119 . biological_region 79643 79652 0.999 - . logic_name=eponine scaffold_119 . biological_region 81721 81723 0.999 + . logic_name=eponine scaffold_119 . biological_region 82291 82294 0.999 - . logic_name=eponine scaffold_119 . biological_region 82314 82320 0.999 - . logic_name=eponine scaffold_119 . biological_region 82338 82340 0.999 - . logic_name=eponine scaffold_119 . biological_region 82395 82401 0.999 + . logic_name=eponine scaffold_119 . biological_region 82497 82497 0.999 - . logic_name=eponine scaffold_119 . exon 77248 77485 . + . ID=Physo109495.4;Parent=Physo109495;constitutive=1;ensembl_phase=2;rank=4 scaffold_119 ensembl protein_coding_gene 77773 78810 . - . ID=Physo109496;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1190009;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 77773 78810 . - . ID=Physo109496;Parent=Physo109496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 77773 78810 . - 0 ID=Physo109496;Parent=Physo109496;rank=1 scaffold_119 . exon 77773 78810 . - . ID=Physo109496.1;Parent=Physo109496;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 80906 82576 . - . ID=Physo109497;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1190010;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 80906 82576 . - . ID=Physo109497;Parent=Physo109497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . exon 80906 82516 . - . ID=Physo109497.2;Parent=Physo109497;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_119 . CDS 80954 82516 . - 0 ID=Physo109497;Parent=Physo109497;rank=2 scaffold_119 . CDS 82538 82576 . - 0 ID=Physo109497;Parent=Physo109497;rank=1 scaffold_119 . exon 82538 82576 . - . ID=Physo109497.1;Parent=Physo109497;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 83116 85520 . - . ID=Physo123045;biotype=protein_coding;external_name=estExt_Genewise1.C_1190045;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 83116 85520 . - . ID=Physo123045;Parent=Physo123045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . exon 83116 83851 . - . ID=Physo123045.3;Parent=Physo123045;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_119 . CDS 83118 83851 . - 0 ID=Physo123045;Parent=Physo123045;rank=3 scaffold_119 . CDS 83993 84343 . - 0 ID=Physo123045;Parent=Physo123045;rank=2 scaffold_119 . exon 83993 84343 . - . ID=Physo123045.2;Parent=Physo123045;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 84575 85496 . - 0 ID=Physo123045;Parent=Physo123045;rank=1 scaffold_119 . exon 84575 85520 . - . ID=Physo123045.1;Parent=Physo123045;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_119 ensembl protein_coding_gene 79180 80682 . + . ID=Physo142658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190028;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 79180 80682 . + . ID=Physo142658;Parent=Physo142658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . exon 79180 79315 . + . ID=Physo142658.1;Parent=Physo142658;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_119 . CDS 79215 79315 . + 0 ID=Physo142658;Parent=Physo142658;rank=1 scaffold_119 . CDS 79416 79477 . + 0 ID=Physo142658;Parent=Physo142658;rank=2 scaffold_119 . exon 79416 79477 . + . ID=Physo142658.2;Parent=Physo142658;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_119 . CDS 79563 79741 . + 0 ID=Physo142658;Parent=Physo142658;rank=3 scaffold_119 . exon 79563 79741 . + . ID=Physo142658.3;Parent=Physo142658;constitutive=1;ensembl_phase=1;rank=3 scaffold_119 . CDS 79825 80123 . + 0 ID=Physo142658;Parent=Physo142658;rank=4 scaffold_119 . exon 79825 80123 . + . ID=Physo142658.4;Parent=Physo142658;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_119 . CDS 80196 80682 . + 0 ID=Physo142658;Parent=Physo142658;rank=5 scaffold_119 . exon 80196 80682 . + . ID=Physo142658.5;Parent=Physo142658;constitutive=1;ensembl_phase=2;rank=5 scaffold_119 ensembl protein_coding_gene 94264 95253 . - . ID=Physo142660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190030;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 94264 95253 . - . ID=Physo142660;Parent=Physo142660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 94264 94275 . - 0 ID=Physo142660;Parent=Physo142660;rank=2 scaffold_119 . exon 94264 94275 . - . ID=Physo142660.2;Parent=Physo142660;constitutive=1;rank=2 scaffold_119 . CDS 94486 95253 . - 0 ID=Physo142660;Parent=Physo142660;rank=1 scaffold_119 . exon 94486 95253 . - . ID=Physo142660.1;Parent=Physo142660;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 95388 95938 . + . ID=Physo142661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190031;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 95388 95938 . + . ID=Physo142661;Parent=Physo142661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 95388 95774 . + 0 ID=Physo142661;Parent=Physo142661;rank=1 scaffold_119 . exon 95388 95774 . + . ID=Physo142661.1;Parent=Physo142661;constitutive=1;rank=1 scaffold_119 . CDS 95888 95938 . + 0 ID=Physo142661;Parent=Physo142661;rank=2 scaffold_119 . exon 95888 95938 . + . ID=Physo142661.2;Parent=Physo142661;constitutive=1;rank=2 scaffold_119 . repeat_region 100372 100379 . ? . description=dust scaffold_119 . biological_region 100917 100923 0.999 - . logic_name=eponine scaffold_119 . biological_region 101004 101007 0.999 + . logic_name=eponine scaffold_119 . repeat_region 101142 101149 . ? . description=dust scaffold_119 . biological_region 101905 101909 0.999 + . logic_name=eponine scaffold_119 . repeat_region 102949 102961 . ? . description=dust scaffold_119 . biological_region 103184 103186 0.999 + . logic_name=eponine scaffold_119 . biological_region 103341 103345 0.999 + . logic_name=eponine scaffold_119 . biological_region 103397 103402 0.999 + . logic_name=eponine scaffold_119 . biological_region 103440 103441 0.999 + . logic_name=eponine scaffold_119 . biological_region 103440 103445 0.999 - . logic_name=eponine scaffold_119 . biological_region 103459 103463 0.999 + . logic_name=eponine scaffold_119 . biological_region 103498 103501 0.999 + . logic_name=eponine scaffold_119 . biological_region 103685 103686 0.999 - . logic_name=eponine scaffold_119 . biological_region 105696 105701 0.999 - . logic_name=eponine scaffold_119 . biological_region 105749 105755 0.999 + . logic_name=eponine scaffold_119 . biological_region 105802 105806 0.999 - . logic_name=eponine scaffold_119 . biological_region 105827 105832 0.999 - . logic_name=eponine scaffold_119 ensembl protein_coding_gene 101341 103136 . - . ID=Physo109498;biotype=protein_coding;description=Beta-tubulin [Source:UniProtKB/TrEMBL%3BAcc:A7XGY7];external_name=BTUB;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 101341 103136 . - . ID=Physo109498;Parent=Physo109498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . exon 101341 102821 . - . ID=Physo109498.2;Parent=Physo109498;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_119 . CDS 101469 102809 . - 0 ID=Physo109498;Parent=Physo109498;rank=1 scaffold_119 . exon 103023 103136 . - . ID=Physo109498.1;Parent=Physo109498;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_119 ensembl protein_coding_gene 100742 101110 . - . ID=Physo142662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190032;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 100742 101110 . - . ID=Physo142662;Parent=Physo142662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 100742 101110 . - 0 ID=Physo142662;Parent=Physo142662;rank=1 scaffold_119 . exon 100742 101110 . - . ID=Physo142662.1;Parent=Physo142662;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 104248 105863 . + . ID=Physo142664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190034;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 104248 105863 . + . ID=Physo142664;Parent=Physo142664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 104248 104377 . + 0 ID=Physo142664;Parent=Physo142664;rank=1 scaffold_119 . exon 104248 104377 . + . ID=Physo142664.1;Parent=Physo142664;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 . CDS 104456 104691 . + 0 ID=Physo142664;Parent=Physo142664;rank=2 scaffold_119 . exon 104456 104691 . + . ID=Physo142664.2;Parent=Physo142664;constitutive=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 104775 104890 . + 0 ID=Physo142664;Parent=Physo142664;rank=3 scaffold_119 . exon 104775 104890 . + . ID=Physo142664.3;Parent=Physo142664;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_119 . CDS 104973 105147 . + 0 ID=Physo142664;Parent=Physo142664;rank=4 scaffold_119 . exon 104973 105147 . + . ID=Physo142664.4;Parent=Physo142664;constitutive=1;ensembl_phase=2;rank=4 scaffold_119 . CDS 105171 105863 . + 0 ID=Physo142664;Parent=Physo142664;rank=5 scaffold_119 . exon 105171 105863 . + . ID=Physo142664.5;Parent=Physo142664;constitutive=1;rank=5 scaffold_119 ensembl protein_coding_gene 107170 108243 . + . ID=Physo142665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190035;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 107170 108243 . + . ID=Physo142665;Parent=Physo142665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 107170 107188 . + 0 ID=Physo142665;Parent=Physo142665;rank=1 scaffold_119 . exon 107170 107188 . + . ID=Physo142665.1;Parent=Physo142665;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 . CDS 107313 107458 . + 0 ID=Physo142665;Parent=Physo142665;rank=2 scaffold_119 . exon 107313 107458 . + . ID=Physo142665.2;Parent=Physo142665;constitutive=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 107484 107951 . + 0 ID=Physo142665;Parent=Physo142665;rank=3 scaffold_119 . exon 107484 107951 . + . ID=Physo142665.3;Parent=Physo142665;constitutive=1;rank=3 scaffold_119 . CDS 107983 108243 . + 0 ID=Physo142665;Parent=Physo142665;rank=4 scaffold_119 . exon 107983 108243 . + . ID=Physo142665.4;Parent=Physo142665;constitutive=1;rank=4 scaffold_119 ensembl protein_coding_gene 109582 110253 . + . ID=Physo142666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190036;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 109582 110253 . + . ID=Physo142666;Parent=Physo142666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 109582 110253 . + 0 ID=Physo142666;Parent=Physo142666;rank=1 scaffold_119 . exon 109582 110253 . + . ID=Physo142666.1;Parent=Physo142666;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 111502 113120 . + . ID=Physo142667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190037;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 111502 113120 . + . ID=Physo142667;Parent=Physo142667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 111502 111584 . + 0 ID=Physo142667;Parent=Physo142667;rank=1 scaffold_119 . exon 111502 111584 . + . ID=Physo142667.1;Parent=Physo142667;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_119 . CDS 111666 111958 . + 0 ID=Physo142667;Parent=Physo142667;rank=2 scaffold_119 . exon 111666 111958 . + . ID=Physo142667.2;Parent=Physo142667;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_119 . CDS 112030 112335 . + 0 ID=Physo142667;Parent=Physo142667;rank=3 scaffold_119 . exon 112030 112335 . + . ID=Physo142667.3;Parent=Physo142667;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_119 . CDS 112442 112623 . + 0 ID=Physo142667;Parent=Physo142667;rank=4 scaffold_119 . exon 112442 112623 . + . ID=Physo142667.4;Parent=Physo142667;constitutive=1;ensembl_phase=1;rank=4 scaffold_119 . CDS 112668 113018 . + 0 ID=Physo142667;Parent=Physo142667;rank=5 scaffold_119 . exon 112668 113120 . + . ID=Physo142667.5;Parent=Physo142667;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_119 ensembl protein_coding_gene 113732 118273 . + . ID=Physo142668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190038;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 113732 118273 . + . ID=Physo142668;Parent=Physo142668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 113732 118273 . + 0 ID=Physo142668;Parent=Physo142668;rank=1 scaffold_119 . exon 113732 118273 . + . ID=Physo142668.1;Parent=Physo142668;constitutive=1;rank=1 scaffold_119 . biological_region 119010 119012 0.999 - . logic_name=eponine scaffold_119 . biological_region 119039 119042 0.999 + . logic_name=eponine scaffold_119 . biological_region 119690 119691 0.999 - . logic_name=eponine scaffold_119 . repeat_region 119713 119721 . ? . description=dust scaffold_119 . repeat_region 120865 121111 . ? . description=trf scaffold_119 . biological_region 120881 120884 0.999 - . logic_name=eponine scaffold_119 . biological_region 121438 121439 0.999 - . logic_name=eponine scaffold_119 . biological_region 123530 123532 0.999 + . logic_name=eponine scaffold_119 . biological_region 123706 123706 0.999 + . logic_name=eponine scaffold_119 . biological_region 123712 123720 0.999 - . logic_name=eponine scaffold_119 . biological_region 123747 123748 0.999 + . logic_name=eponine scaffold_119 . biological_region 123766 123769 0.999 - . logic_name=eponine scaffold_119 . repeat_region 124495 124504 . ? . description=dust scaffold_119 ensembl protein_coding_gene 118567 119384 . - . ID=Physo142669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190039;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 118567 119384 . - . ID=Physo142669;Parent=Physo142669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . exon 118567 118849 . - . ID=Physo142669.3;Parent=Physo142669;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_119 . CDS 118586 118849 . - 0 ID=Physo142669;Parent=Physo142669;rank=3 scaffold_119 . CDS 118919 119147 . - 0 ID=Physo142669;Parent=Physo142669;rank=2 scaffold_119 . exon 118919 119147 . - . ID=Physo142669.2;Parent=Physo142669;constitutive=1;ensembl_phase=2;rank=2 scaffold_119 . CDS 119278 119378 . - 0 ID=Physo142669;Parent=Physo142669;rank=1 scaffold_119 . exon 119278 119384 . - . ID=Physo142669.1;Parent=Physo142669;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_119 ensembl protein_coding_gene 120712 121560 . - . ID=Physo142670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190040;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 120712 121560 . - . ID=Physo142670;Parent=Physo142670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 120712 121560 . - 0 ID=Physo142670;Parent=Physo142670;rank=1 scaffold_119 . exon 120712 121560 . - . ID=Physo142670.1;Parent=Physo142670;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 124965 131069 . + . ID=Physo142671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190041;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 124965 131069 . + . ID=Physo142671;Parent=Physo142671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 124965 131069 . + 0 ID=Physo142671;Parent=Physo142671;rank=1 scaffold_119 . exon 124965 131069 . + . ID=Physo142671.1;Parent=Physo142671;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 131717 139543 . + . ID=Physo142672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190042;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 131717 139543 . + . ID=Physo142672;Parent=Physo142672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 131717 136260 . + 0 ID=Physo142672;Parent=Physo142672;rank=1 scaffold_119 . exon 131717 136260 . + . ID=Physo142672.1;Parent=Physo142672;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_119 . CDS 136295 137187 . + 0 ID=Physo142672;Parent=Physo142672;rank=2 scaffold_119 . CDS 137226 139543 . + 0 ID=Physo142672;Parent=Physo142672;rank=3 scaffold_119 . repeat_region 132001 135846 . ? . description=trf scaffold_119 . repeat_region 132014 135345 . ? . description=trf scaffold_119 . repeat_region 135422 137724 . ? . description=trf scaffold_119 . repeat_region 138394 138582 . ? . description=trf scaffold_119 . repeat_region 138724 138743 . ? . description=trf scaffold_119 . repeat_region 140574 140610 . ? . description=trf scaffold_119 . repeat_region 143274 143301 . ? . description=trf scaffold_119 . exon 136295 137187 . + . ID=Physo142672.2;Parent=Physo142672;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_119 . exon 137226 139543 . + . ID=Physo142672.3;Parent=Physo142672;constitutive=1;ensembl_phase=1;rank=3 scaffold_119 ensembl protein_coding_gene 139813 140235 . + . ID=Physo142673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190043;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 139813 140235 . + . ID=Physo142673;Parent=Physo142673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 139813 140235 . + 0 ID=Physo142673;Parent=Physo142673;rank=1 scaffold_119 . exon 139813 140235 . + . ID=Physo142673.1;Parent=Physo142673;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 140566 143007 . + . ID=Physo142674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190044;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 140566 143007 . + . ID=Physo142674;Parent=Physo142674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 140566 141364 . + 0 ID=Physo142674;Parent=Physo142674;rank=1 scaffold_119 . exon 140566 141364 . + . ID=Physo142674.1;Parent=Physo142674;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 . CDS 141753 142004 . + 0 ID=Physo142674;Parent=Physo142674;rank=2 scaffold_119 . exon 141753 142004 . + . ID=Physo142674.2;Parent=Physo142674;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 142301 143007 . + 0 ID=Physo142674;Parent=Physo142674;rank=3 scaffold_119 . exon 142301 143007 . + . ID=Physo142674.3;Parent=Physo142674;constitutive=1;ensembl_phase=1;rank=3 scaffold_119 ensembl protein_coding_gene 143182 145860 . - . ID=Physo142675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190045;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 143182 145860 . - . ID=Physo142675;Parent=Physo142675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 143182 145860 . - 0 ID=Physo142675;Parent=Physo142675;rank=1 scaffold_119 . exon 143182 145860 . - . ID=Physo142675.1;Parent=Physo142675;constitutive=1;rank=1 scaffold_119 . biological_region 144877 144879 0.999 + . logic_name=eponine scaffold_119 . biological_region 145441 145443 0.999 + . logic_name=eponine scaffold_119 . biological_region 145528 145528 0.999 + . logic_name=eponine scaffold_119 . biological_region 145585 145589 0.999 + . logic_name=eponine scaffold_119 . biological_region 145620 145623 0.999 - . logic_name=eponine scaffold_119 . biological_region 145664 145665 0.999 - . logic_name=eponine scaffold_119 . biological_region 145694 145697 0.999 + . logic_name=eponine scaffold_119 . biological_region 145700 145701 0.999 - . logic_name=eponine scaffold_119 . biological_region 145701 145705 0.999 + . logic_name=eponine scaffold_119 . biological_region 145718 145721 0.999 + . logic_name=eponine scaffold_119 . biological_region 145742 145742 0.999 - . logic_name=eponine scaffold_119 . biological_region 146695 146697 0.999 + . logic_name=eponine scaffold_119 . repeat_region 146749 146772 . ? . description=dust scaffold_119 . repeat_region 147168 147204 . ? . description=dust scaffold_119 . biological_region 152397 152399 0.999 - . logic_name=eponine scaffold_119 . biological_region 152990 152990 0.999 - . logic_name=eponine scaffold_119 ensembl protein_coding_gene 146784 152668 . + . ID=Physo142676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190046;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 146784 152668 . + . ID=Physo142676;Parent=Physo142676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 146784 146829 . + 0 ID=Physo142676;Parent=Physo142676;rank=1 scaffold_119 . exon 146784 146829 . + . ID=Physo142676.1;Parent=Physo142676;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 . CDS 146939 152580 . + 0 ID=Physo142676;Parent=Physo142676;rank=2 scaffold_119 . exon 146939 152668 . + . ID=Physo142676.2;Parent=Physo142676;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_119 ensembl protein_coding_gene 152672 154858 . - . ID=Physo142677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190047;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 152672 154858 . - . ID=Physo142677;Parent=Physo142677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 152672 154218 . - 0 ID=Physo142677;Parent=Physo142677;rank=4 scaffold_119 . exon 152672 154218 . - . ID=Physo142677.4;Parent=Physo142677;constitutive=1;ensembl_phase=1;rank=4 scaffold_119 . CDS 154264 154354 . - 0 ID=Physo142677;Parent=Physo142677;rank=3 scaffold_119 . exon 154264 154354 . - . ID=Physo142677.3;Parent=Physo142677;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_119 . CDS 154463 154650 . - 0 ID=Physo142677;Parent=Physo142677;rank=2 scaffold_119 . CDS 154786 154858 . - 0 ID=Physo142677;Parent=Physo142677;rank=1 scaffold_119 . repeat_region 159084 159111 . ? . description=trf scaffold_119 . exon 154463 154650 . - . ID=Physo142677.2;Parent=Physo142677;constitutive=1;ensembl_phase=1;rank=2 scaffold_119 . exon 154786 154858 . - . ID=Physo142677.1;Parent=Physo142677;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 ensembl protein_coding_gene 161042 162262 . + . ID=Physo142681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190051;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 161042 162262 . + . ID=Physo142681;Parent=Physo142681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 161042 162262 . + 0 ID=Physo142681;Parent=Physo142681;rank=1 scaffold_119 . exon 161042 162262 . + . ID=Physo142681.1;Parent=Physo142681;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 162597 163994 . - . ID=Physo142682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190052;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 162597 163994 . - . ID=Physo142682;Parent=Physo142682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 162597 163994 . - 0 ID=Physo142682;Parent=Physo142682;rank=1 scaffold_119 . exon 162597 163994 . - . ID=Physo142682.1;Parent=Physo142682;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 157904 158617 . - . ID=Physo158604;biotype=protein_coding;external_name=C_scaffold_119000025;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 157904 158617 . - . ID=Physo158604;Parent=Physo158604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 157904 158617 . - 0 ID=Physo158604;Parent=Physo158604;rank=1 scaffold_119 . exon 157904 158617 . - . ID=Physo158604.1;Parent=Physo158604;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 158784 159706 . + . ID=Physo158605;biotype=protein_coding;external_name=C_scaffold_119000026;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 158784 159706 . + . ID=Physo158605;Parent=Physo158605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 158784 159014 . + 0 ID=Physo158605;Parent=Physo158605;rank=1 scaffold_119 . exon 158784 159014 . + . ID=Physo158605.1;Parent=Physo158605;constitutive=1;rank=1 scaffold_119 . CDS 159121 159211 . + 0 ID=Physo158605;Parent=Physo158605;rank=2 scaffold_119 . exon 159121 159211 . + . ID=Physo158605.2;Parent=Physo158605;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_119 . CDS 159292 159530 . + 0 ID=Physo158605;Parent=Physo158605;rank=3 scaffold_119 . exon 159292 159530 . + . ID=Physo158605.3;Parent=Physo158605;constitutive=1;ensembl_phase=1;rank=3 scaffold_119 . CDS 159608 159706 . + 0 ID=Physo158605;Parent=Physo158605;rank=4 scaffold_119 . exon 159608 159706 . + . ID=Physo158605.4;Parent=Physo158605;constitutive=1;rank=4 scaffold_119 ensembl protein_coding_gene 159879 160926 . - . ID=Physo158606;biotype=protein_coding;external_name=C_scaffold_119000027;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 159879 160926 . - . ID=Physo158606;Parent=Physo158606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 159879 160319 . - 0 ID=Physo158606;Parent=Physo158606;rank=4 scaffold_119 . exon 159879 160319 . - . ID=Physo158606.4;Parent=Physo158606;constitutive=1;rank=4 scaffold_119 . CDS 160386 160450 . - 0 ID=Physo158606;Parent=Physo158606;rank=3 scaffold_119 . exon 160386 160450 . - . ID=Physo158606.3;Parent=Physo158606;constitutive=1;ensembl_phase=1;rank=3 scaffold_119 . CDS 160542 160618 . - 0 ID=Physo158606;Parent=Physo158606;rank=2 scaffold_119 . exon 160542 160618 . - . ID=Physo158606.2;Parent=Physo158606;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_119 . CDS 160709 160926 . - 0 ID=Physo158606;Parent=Physo158606;rank=1 scaffold_119 . exon 160709 160926 . - . ID=Physo158606.1;Parent=Physo158606;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_119 . biological_region 164464 164467 0.999 + . logic_name=eponine scaffold_119 . biological_region 164542 164548 0.999 + . logic_name=eponine scaffold_119 . biological_region 165480 165484 0.999 - . logic_name=eponine scaffold_119 . biological_region 165585 165588 0.999 + . logic_name=eponine scaffold_119 . biological_region 165819 165824 0.999 - . logic_name=eponine scaffold_119 . biological_region 166279 166282 0.999 + . logic_name=eponine scaffold_119 . repeat_region 166530 166537 . ? . description=dust scaffold_119 . biological_region 169728 169729 0.999 - . logic_name=eponine scaffold_119 . biological_region 169879 169879 0.999 + . logic_name=eponine scaffold_119 . biological_region 170095 170102 0.999 + . logic_name=eponine scaffold_119 . biological_region 170561 170567 0.999 + . logic_name=eponine scaffold_119 . biological_region 170563 170564 0.999 - . logic_name=eponine scaffold_119 . biological_region 170591 170593 0.999 - . logic_name=eponine scaffold_119 . biological_region 170645 170650 0.999 + . logic_name=eponine scaffold_119 . biological_region 170656 170659 0.999 + . logic_name=eponine scaffold_119 . biological_region 171642 171644 0.999 - . logic_name=eponine scaffold_119 . biological_region 171675 171678 0.999 + . logic_name=eponine scaffold_119 . repeat_region 173066 173074 . ? . description=dust scaffold_119 ensembl protein_coding_gene 164309 166065 . - . ID=Physo109499;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1190012;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 164309 166065 . - . ID=Physo109499;Parent=Physo109499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 164309 164407 . - 0 ID=Physo109499;Parent=Physo109499;rank=3 scaffold_119 . exon 164309 164407 . - . ID=Physo109499.3;Parent=Physo109499;constitutive=1;rank=3 scaffold_119 . CDS 164467 165906 . - 0 ID=Physo109499;Parent=Physo109499;rank=2 scaffold_119 . exon 164467 165906 . - . ID=Physo109499.2;Parent=Physo109499;constitutive=1;rank=2 scaffold_119 . CDS 165931 166065 . - 0 ID=Physo109499;Parent=Physo109499;rank=1 scaffold_119 . exon 165931 166065 . - . ID=Physo109499.1;Parent=Physo109499;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 169358 170251 . - . ID=Physo142684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190054;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 169358 170251 . - . ID=Physo142684;Parent=Physo142684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 169358 170251 . - 0 ID=Physo142684;Parent=Physo142684;rank=1 scaffold_119 . exon 169358 170251 . - . ID=Physo142684.1;Parent=Physo142684;constitutive=1;rank=1 scaffold_119 . repeat_region 177518 177542 . ? . description=trf scaffold_119 . repeat_region 182082 182113 . ? . description=trf scaffold_119 ensembl protein_coding_gene 180832 181797 . - . ID=Physo142685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190055;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 180832 181797 . - . ID=Physo142685;Parent=Physo142685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 180832 181797 . - 0 ID=Physo142685;Parent=Physo142685;rank=1 scaffold_119 . exon 180832 181797 . - . ID=Physo142685.1;Parent=Physo142685;constitutive=1;rank=1 scaffold_119 ensembl protein_coding_gene 181964 183569 . + . ID=Physo142686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190056;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 181964 183569 . + . ID=Physo142686;Parent=Physo142686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . exon 181964 182210 . + . ID=Physo142686.1;Parent=Physo142686;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_119 . CDS 181984 182210 . + 0 ID=Physo142686;Parent=Physo142686;rank=1 scaffold_119 . CDS 182293 182625 . + 0 ID=Physo142686;Parent=Physo142686;rank=2 scaffold_119 . exon 182293 182625 . + . ID=Physo142686.2;Parent=Physo142686;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_119 . CDS 182711 183569 . + 0 ID=Physo142686;Parent=Physo142686;rank=3 scaffold_119 . exon 182711 183569 . + . ID=Physo142686.3;Parent=Physo142686;constitutive=1;ensembl_phase=2;rank=3 scaffold_119 . biological_region 188594 188597 0.999 - . logic_name=eponine scaffold_119 . biological_region 188635 188635 0.999 + . logic_name=eponine scaffold_119 . biological_region 190838 190842 0.999 - . logic_name=eponine scaffold_119 . biological_region 191390 191395 0.999 + . logic_name=eponine scaffold_119 . biological_region 191801 191803 0.999 + . logic_name=eponine scaffold_119 ensembl protein_coding_gene 183674 191909 . - . ID=Physo142687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190057;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 183674 191909 . - . ID=Physo142687;Parent=Physo142687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 183674 191520 . - 0 ID=Physo142687;Parent=Physo142687;rank=2 scaffold_119 . exon 183674 191520 . - . ID=Physo142687.2;Parent=Physo142687;constitutive=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 191591 191909 . - 0 ID=Physo142687;Parent=Physo142687;rank=1 scaffold_119 . exon 191591 191909 . - . ID=Physo142687.1;Parent=Physo142687;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 . repeat_region 194149 194156 . ? . description=dust scaffold_119 . repeat_region 201096 201115 . ? . description=trf scaffold_119 ensembl protein_coding_gene 195365 198404 . + . ID=Physo142688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190058;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 195365 198404 . + . ID=Physo142688;Parent=Physo142688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 195365 198298 . + 0 ID=Physo142688;Parent=Physo142688;rank=1 scaffold_119 . exon 195365 198404 . + . ID=Physo142688.1;Parent=Physo142688;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_119 ensembl protein_coding_gene 198541 199589 . + . ID=Physo142689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190059;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 198541 199589 . + . ID=Physo142689;Parent=Physo142689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 198541 198622 . + 0 ID=Physo142689;Parent=Physo142689;rank=1 scaffold_119 . exon 198541 198622 . + . ID=Physo142689.1;Parent=Physo142689;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_119 . CDS 198712 199199 . + 0 ID=Physo142689;Parent=Physo142689;rank=2 scaffold_119 . exon 198712 199199 . + . ID=Physo142689.2;Parent=Physo142689;constitutive=1;ensembl_phase=1;rank=2 scaffold_119 . CDS 199274 199400 . + 0 ID=Physo142689;Parent=Physo142689;rank=3 scaffold_119 . exon 199274 199400 . + . ID=Physo142689.3;Parent=Physo142689;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_119 . CDS 199429 199589 . + 0 ID=Physo142689;Parent=Physo142689;rank=4 scaffold_119 . exon 199429 199589 . + . ID=Physo142689.4;Parent=Physo142689;constitutive=1;ensembl_phase=1;rank=4 scaffold_119 ensembl protein_coding_gene 200523 202379 . + . ID=Physo142690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1190060;logic_name=jgi_physo1_1 scaffold_119 ensembl transcript 200523 202379 . + . ID=Physo142690;Parent=Physo142690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_119 . CDS 200523 202379 . + 0 ID=Physo142690;Parent=Physo142690;rank=1 scaffold_119 . exon 200523 202379 . + . ID=Physo142690.1;Parent=Physo142690;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_118 1 202625 scaffold_118 . repeat_region 1018 1618 . ? . description=dust scaffold_118 . biological_region 7465 7469 0.999 + . logic_name=eponine scaffold_118 . biological_region 7540 7547 0.999 - . logic_name=eponine scaffold_118 . biological_region 7833 7834 0.999 + . logic_name=eponine scaffold_118 . biological_region 9627 9631 0.999 + . logic_name=eponine scaffold_118 ensembl protein_coding_gene 6146 6896 . + . ID=Physo122984;biotype=protein_coding;external_name=estExt_Genewise1.C_1180003;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 6146 6896 . + . ID=Physo122984;Parent=Physo122984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 6146 6708 . + 0 ID=Physo122984;Parent=Physo122984;rank=1 scaffold_118 . exon 6146 6708 . + . ID=Physo122984.1;Parent=Physo122984;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . CDS 6764 6896 . + 0 ID=Physo122984;Parent=Physo122984;rank=2 scaffold_118 . exon 6764 6896 . + . ID=Physo122984.2;Parent=Physo122984;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 ensembl protein_coding_gene 9579 10856 . + . ID=Physo142601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180002;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 9579 10856 . + . ID=Physo142601;Parent=Physo142601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 9579 9753 . + 0 ID=Physo142601;Parent=Physo142601;rank=1 scaffold_118 . exon 9579 9753 . + . ID=Physo142601.1;Parent=Physo142601;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 9842 10509 . + 0 ID=Physo142601;Parent=Physo142601;rank=2 scaffold_118 . CDS 10572 10856 . + 0 ID=Physo142601;Parent=Physo142601;rank=3 scaffold_118 . repeat_region 10129 10148 . ? . description=trf scaffold_118 . repeat_region 18962 18981 . ? . description=trf scaffold_118 . exon 9842 10509 . + . ID=Physo142601.2;Parent=Physo142601;constitutive=1;ensembl_phase=1;rank=2 scaffold_118 . exon 10572 10856 . + . ID=Physo142601.3;Parent=Physo142601;constitutive=1;rank=3 scaffold_118 ensembl protein_coding_gene 14923 16173 . - . ID=Physo142602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180003;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 14923 16173 . - . ID=Physo142602;Parent=Physo142602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 14923 16173 . - 0 ID=Physo142602;Parent=Physo142602;rank=1 scaffold_118 . exon 14923 16173 . - . ID=Physo142602.1;Parent=Physo142602;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 16521 17788 . + . ID=Physo142603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180004;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 16521 17788 . + . ID=Physo142603;Parent=Physo142603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 16521 16843 . + 0 ID=Physo142603;Parent=Physo142603;rank=1 scaffold_118 . exon 16521 16843 . + . ID=Physo142603.1;Parent=Physo142603;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . CDS 16960 17788 . + 0 ID=Physo142603;Parent=Physo142603;rank=2 scaffold_118 . exon 16960 17788 . + . ID=Physo142603.2;Parent=Physo142603;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 ensembl protein_coding_gene 18587 20816 . - . ID=Physo142604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180005;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 18587 20816 . - . ID=Physo142604;Parent=Physo142604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 18587 18595 . - 0 ID=Physo142604;Parent=Physo142604;rank=7 scaffold_118 . exon 18587 18595 . - . ID=Physo142604.7;Parent=Physo142604;constitutive=1;rank=7 scaffold_118 . CDS 18634 18944 . - 0 ID=Physo142604;Parent=Physo142604;rank=6 scaffold_118 . exon 18634 18944 . - . ID=Physo142604.6;Parent=Physo142604;constitutive=1;ensembl_phase=1;rank=6 scaffold_118 . CDS 18985 19046 . - 0 ID=Physo142604;Parent=Physo142604;rank=5 scaffold_118 . exon 18985 19046 . - . ID=Physo142604.5;Parent=Physo142604;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_118 . CDS 19085 19401 . - 0 ID=Physo142604;Parent=Physo142604;rank=4 scaffold_118 . exon 19085 19401 . - . ID=Physo142604.4;Parent=Physo142604;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_118 . CDS 19526 19747 . - 0 ID=Physo142604;Parent=Physo142604;rank=3 scaffold_118 . CDS 19863 20070 . - 0 ID=Physo142604;Parent=Physo142604;rank=2 scaffold_118 . CDS 20407 20816 . - 0 ID=Physo142604;Parent=Physo142604;rank=1 scaffold_118 . biological_region 19862 19866 0.999 + . logic_name=eponine scaffold_118 . repeat_region 21542 21550 . ? . description=dust scaffold_118 . repeat_region 21666 28947 . ? . description=dust scaffold_118 . exon 19526 19747 . - . ID=Physo142604.3;Parent=Physo142604;constitutive=1;rank=3 scaffold_118 . exon 19863 20070 . - . ID=Physo142604.2;Parent=Physo142604;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . exon 20407 20816 . - . ID=Physo142604.1;Parent=Physo142604;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . repeat_region 28948 44949 . ? . description=dust scaffold_118 . repeat_region 46464 46475 . ? . description=dust scaffold_118 . biological_region 47082 47085 0.999 + . logic_name=eponine scaffold_118 . repeat_region 47741 47754 . ? . description=dust scaffold_118 . repeat_region 51375 51405 . ? . description=trf scaffold_118 . repeat_region 53582 53639 . ? . description=trf scaffold_118 ensembl protein_coding_gene 51949 53323 . + . ID=Physo142605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180006;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 51949 53323 . + . ID=Physo142605;Parent=Physo142605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 51949 51975 . + 0 ID=Physo142605;Parent=Physo142605;rank=1 scaffold_118 . exon 51949 51975 . + . ID=Physo142605.1;Parent=Physo142605;constitutive=1;rank=1 scaffold_118 . CDS 52382 52456 . + 0 ID=Physo142605;Parent=Physo142605;rank=2 scaffold_118 . exon 52382 52456 . + . ID=Physo142605.2;Parent=Physo142605;constitutive=1;rank=2 scaffold_118 . CDS 52496 52730 . + 0 ID=Physo142605;Parent=Physo142605;rank=3 scaffold_118 . exon 52496 52730 . + . ID=Physo142605.3;Parent=Physo142605;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_118 . CDS 52794 53323 . + 0 ID=Physo142605;Parent=Physo142605;rank=4 scaffold_118 . exon 52794 53323 . + . ID=Physo142605.4;Parent=Physo142605;constitutive=1;ensembl_phase=1;rank=4 scaffold_118 ensembl protein_coding_gene 54528 59615 . - . ID=Physo142606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180007;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 54528 59615 . - . ID=Physo142606;Parent=Physo142606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 54528 59615 . - 0 ID=Physo142606;Parent=Physo142606;rank=1 scaffold_118 . exon 54528 59615 . - . ID=Physo142606.1;Parent=Physo142606;constitutive=1;rank=1 scaffold_118 . biological_region 61730 61734 0.999 + . logic_name=eponine scaffold_118 . biological_region 61760 61760 0.999 + . logic_name=eponine scaffold_118 . biological_region 62263 62265 0.999 - . logic_name=eponine scaffold_118 ensembl protein_coding_gene 61204 62948 . - . ID=Physo142607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180008;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 61204 62948 . - . ID=Physo142607;Parent=Physo142607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 61204 61218 . - 0 ID=Physo142607;Parent=Physo142607;rank=2 scaffold_118 . exon 61204 61218 . - . ID=Physo142607.2;Parent=Physo142607;constitutive=1;rank=2 scaffold_118 . CDS 61536 62948 . - 0 ID=Physo142607;Parent=Physo142607;rank=1 scaffold_118 . exon 61536 62948 . - . ID=Physo142607.1;Parent=Physo142607;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 63653 65261 . + . ID=Physo142608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180009;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 63653 65261 . + . ID=Physo142608;Parent=Physo142608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 63653 64460 . + 0 ID=Physo142608;Parent=Physo142608;rank=1 scaffold_118 . exon 63653 64460 . + . ID=Physo142608.1;Parent=Physo142608;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 64488 64599 . + 0 ID=Physo142608;Parent=Physo142608;rank=2 scaffold_118 . exon 64488 64599 . + . ID=Physo142608.2;Parent=Physo142608;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_118 . CDS 64711 64753 . + 0 ID=Physo142608;Parent=Physo142608;rank=3 scaffold_118 . exon 64711 64753 . + . ID=Physo142608.3;Parent=Physo142608;constitutive=1;ensembl_phase=2;rank=3 scaffold_118 . CDS 64823 65049 . + 0 ID=Physo142608;Parent=Physo142608;rank=4 scaffold_118 . exon 64823 65049 . + . ID=Physo142608.4;Parent=Physo142608;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_118 . CDS 65204 65261 . + 0 ID=Physo142608;Parent=Physo142608;rank=5 scaffold_118 . exon 65204 65261 . + . ID=Physo142608.5;Parent=Physo142608;constitutive=1;ensembl_phase=2;rank=5 scaffold_118 ensembl protein_coding_gene 67442 70543 . + . ID=Physo142609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180010;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 67442 70543 . + . ID=Physo142609;Parent=Physo142609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 67442 68330 . + 0 ID=Physo142609;Parent=Physo142609;rank=1 scaffold_118 . exon 67442 68330 . + . ID=Physo142609.1;Parent=Physo142609;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 68439 68762 . + 0 ID=Physo142609;Parent=Physo142609;rank=2 scaffold_118 . CDS 69446 70338 . + 0 ID=Physo142609;Parent=Physo142609;rank=3 scaffold_118 . CDS 70529 70543 . + 0 ID=Physo142609;Parent=Physo142609;rank=4 scaffold_118 . repeat_region 67957 67987 . ? . description=trf scaffold_118 . repeat_region 71447 71502 . ? . description=trf scaffold_118 . repeat_region 71478 71529 . ? . description=trf scaffold_118 . repeat_region 72672 72680 . ? . description=dust scaffold_118 . exon 68439 68762 . + . ID=Physo142609.2;Parent=Physo142609;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_118 . exon 69446 70338 . + . ID=Physo142609.3;Parent=Physo142609;constitutive=1;ensembl_phase=1;rank=3 scaffold_118 . exon 70529 70543 . + . ID=Physo142609.4;Parent=Physo142609;constitutive=1;rank=4 scaffold_118 ensembl protein_coding_gene 74975 75289 . + . ID=Physo142610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180011;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 74975 75289 . + . ID=Physo142610;Parent=Physo142610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 74975 75289 . + 0 ID=Physo142610;Parent=Physo142610;rank=1 scaffold_118 . exon 74975 75289 . + . ID=Physo142610.1;Parent=Physo142610;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 75692 76819 . + . ID=Physo142611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180012;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 75692 76819 . + . ID=Physo142611;Parent=Physo142611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 75692 76819 . + 0 ID=Physo142611;Parent=Physo142611;rank=1 scaffold_118 . exon 75692 76819 . + . ID=Physo142611.1;Parent=Physo142611;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 84096 86218 . + . ID=Physo142612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180013;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 84096 86218 . + . ID=Physo142612;Parent=Physo142612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 84096 84715 . + 0 ID=Physo142612;Parent=Physo142612;rank=1 scaffold_118 . exon 84096 84715 . + . ID=Physo142612.1;Parent=Physo142612;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . CDS 85051 85187 . + 0 ID=Physo142612;Parent=Physo142612;rank=2 scaffold_118 . exon 85051 85187 . + . ID=Physo142612.2;Parent=Physo142612;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 85264 86082 . + 0 ID=Physo142612;Parent=Physo142612;rank=3 scaffold_118 . exon 85264 86082 . + . ID=Physo142612.3;Parent=Physo142612;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_118 . CDS 86181 86218 . + 0 ID=Physo142612;Parent=Physo142612;rank=4 scaffold_118 . exon 86181 86218 . + . ID=Physo142612.4;Parent=Physo142612;constitutive=1;ensembl_phase=1;rank=4 scaffold_118 . repeat_region 86842 88441 . ? . description=dust scaffold_118 . repeat_region 93350 93358 . ? . description=dust scaffold_118 . biological_region 93956 93961 0.999 + . logic_name=eponine scaffold_118 . repeat_region 95207 95215 . ? . description=dust scaffold_118 . repeat_region 95849 95882 . ? . description=trf scaffold_118 ensembl protein_coding_gene 92445 93179 . - . ID=Physo142613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180014;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 92445 93179 . - . ID=Physo142613;Parent=Physo142613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 92445 93179 . - 0 ID=Physo142613;Parent=Physo142613;rank=1 scaffold_118 . exon 92445 93179 . - . ID=Physo142613.1;Parent=Physo142613;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 96636 98371 . + . ID=Physo142614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180015;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 96636 98371 . + . ID=Physo142614;Parent=Physo142614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 96636 97487 . + 0 ID=Physo142614;Parent=Physo142614;rank=1 scaffold_118 . exon 96636 97487 . + . ID=Physo142614.1;Parent=Physo142614;constitutive=1;rank=1 scaffold_118 . CDS 97563 98039 . + 0 ID=Physo142614;Parent=Physo142614;rank=2 scaffold_118 . exon 97563 98039 . + . ID=Physo142614.2;Parent=Physo142614;constitutive=1;rank=2 scaffold_118 . CDS 98357 98371 . + 0 ID=Physo142614;Parent=Physo142614;rank=3 scaffold_118 . exon 98357 98371 . + . ID=Physo142614.3;Parent=Physo142614;constitutive=1;rank=3 scaffold_118 ensembl protein_coding_gene 99960 105029 . + . ID=Physo142615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180016;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 99960 105029 . + . ID=Physo142615;Parent=Physo142615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 99960 105029 . + 0 ID=Physo142615;Parent=Physo142615;rank=1 scaffold_118 . exon 99960 105029 . + . ID=Physo142615.1;Parent=Physo142615;constitutive=1;rank=1 scaffold_118 . repeat_region 106827 106856 . ? . description=trf scaffold_118 . biological_region 107327 107328 0.999 + . logic_name=eponine scaffold_118 . biological_region 107805 107807 0.999 - . logic_name=eponine scaffold_118 . biological_region 108396 108398 0.999 - . logic_name=eponine scaffold_118 . repeat_region 109714 109721 . ? . description=dust scaffold_118 . biological_region 112081 112087 0.999 + . logic_name=eponine scaffold_118 . biological_region 112117 112117 0.999 - . logic_name=eponine scaffold_118 . biological_region 112128 112133 0.999 - . logic_name=eponine scaffold_118 . biological_region 112151 112152 0.999 - . logic_name=eponine scaffold_118 . biological_region 112172 112173 0.999 + . logic_name=eponine scaffold_118 . biological_region 112512 112516 0.999 - . logic_name=eponine scaffold_118 . biological_region 112997 112997 0.999 + . logic_name=eponine scaffold_118 . biological_region 114543 114543 0.999 + . logic_name=eponine scaffold_118 . repeat_region 114715 114744 . ? . description=trf scaffold_118 ensembl protein_coding_gene 107213 108574 . + . ID=Physo142616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180017;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 107213 108574 . + . ID=Physo142616;Parent=Physo142616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 107213 107520 . + 0 ID=Physo142616;Parent=Physo142616;rank=1 scaffold_118 . exon 107213 107520 . + . ID=Physo142616.1;Parent=Physo142616;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . CDS 107571 107991 . + 0 ID=Physo142616;Parent=Physo142616;rank=2 scaffold_118 . exon 107571 107991 . + . ID=Physo142616.2;Parent=Physo142616;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 108017 108574 . + 0 ID=Physo142616;Parent=Physo142616;rank=3 scaffold_118 . exon 108017 108574 . + . ID=Physo142616.3;Parent=Physo142616;constitutive=1;rank=3 scaffold_118 ensembl protein_coding_gene 108703 113249 . + . ID=Physo142617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180018;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 108703 113249 . + . ID=Physo142617;Parent=Physo142617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 108703 109231 . + 0 ID=Physo142617;Parent=Physo142617;rank=1 scaffold_118 . exon 108703 109231 . + . ID=Physo142617.1;Parent=Physo142617;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 109324 109476 . + 0 ID=Physo142617;Parent=Physo142617;rank=2 scaffold_118 . exon 109324 109476 . + . ID=Physo142617.2;Parent=Physo142617;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_118 . CDS 109903 110409 . + 0 ID=Physo142617;Parent=Physo142617;rank=3 scaffold_118 . exon 109903 110409 . + . ID=Physo142617.3;Parent=Physo142617;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_118 . CDS 110488 110668 . + 0 ID=Physo142617;Parent=Physo142617;rank=4 scaffold_118 . exon 110488 110668 . + . ID=Physo142617.4;Parent=Physo142617;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_118 . CDS 110963 110982 . + 0 ID=Physo142617;Parent=Physo142617;rank=5 scaffold_118 . exon 110963 110982 . + . ID=Physo142617.5;Parent=Physo142617;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_118 . CDS 111007 111373 . + 0 ID=Physo142617;Parent=Physo142617;rank=6 scaffold_118 . exon 111007 111373 . + . ID=Physo142617.6;Parent=Physo142617;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_118 . CDS 111635 111748 . + 0 ID=Physo142617;Parent=Physo142617;rank=7 scaffold_118 . exon 111635 111748 . + . ID=Physo142617.7;Parent=Physo142617;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_118 . CDS 111897 112293 . + 0 ID=Physo142617;Parent=Physo142617;rank=8 scaffold_118 . exon 111897 112293 . + . ID=Physo142617.8;Parent=Physo142617;constitutive=1;ensembl_phase=2;rank=8 scaffold_118 . CDS 112392 113249 . + 0 ID=Physo142617;Parent=Physo142617;rank=9 scaffold_118 . exon 112392 113249 . + . ID=Physo142617.9;Parent=Physo142617;constitutive=1;rank=9 scaffold_118 ensembl protein_coding_gene 113458 114666 . - . ID=Physo142618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180019;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 113458 114666 . - . ID=Physo142618;Parent=Physo142618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 113458 113720 . - 0 ID=Physo142618;Parent=Physo142618;rank=7 scaffold_118 . exon 113458 113720 . - . ID=Physo142618.7;Parent=Physo142618;constitutive=1;ensembl_phase=1;rank=7 scaffold_118 . CDS 113760 113824 . - 0 ID=Physo142618;Parent=Physo142618;rank=6 scaffold_118 . exon 113760 113824 . - . ID=Physo142618.6;Parent=Physo142618;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_118 . CDS 113895 113999 . - 0 ID=Physo142618;Parent=Physo142618;rank=5 scaffold_118 . exon 113895 113999 . - . ID=Physo142618.5;Parent=Physo142618;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_118 . CDS 114045 114065 . - 0 ID=Physo142618;Parent=Physo142618;rank=4 scaffold_118 . exon 114045 114065 . - . ID=Physo142618.4;Parent=Physo142618;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_118 . CDS 114194 114216 . - 0 ID=Physo142618;Parent=Physo142618;rank=3 scaffold_118 . exon 114194 114216 . - . ID=Physo142618.3;Parent=Physo142618;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_118 . CDS 114306 114383 . - 0 ID=Physo142618;Parent=Physo142618;rank=2 scaffold_118 . exon 114306 114383 . - . ID=Physo142618.2;Parent=Physo142618;constitutive=1;rank=2 scaffold_118 . CDS 114460 114666 . - 0 ID=Physo142618;Parent=Physo142618;rank=1 scaffold_118 . exon 114460 114666 . - . ID=Physo142618.1;Parent=Physo142618;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 114794 117073 . - . ID=Physo142619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180020;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 114794 117073 . - . ID=Physo142619;Parent=Physo142619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 114794 117073 . - 0 ID=Physo142619;Parent=Physo142619;rank=1 scaffold_118 . exon 114794 117073 . - . ID=Physo142619.1;Parent=Physo142619;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 117426 118079 . - . ID=Physo142620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180021;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 117426 118079 . - . ID=Physo142620;Parent=Physo142620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 117426 118079 . - 0 ID=Physo142620;Parent=Physo142620;rank=1 scaffold_118 . exon 117426 118079 . - . ID=Physo142620.1;Parent=Physo142620;constitutive=1;rank=1 scaffold_118 . biological_region 125902 125906 0.999 - . logic_name=eponine scaffold_118 . repeat_region 126200 126209 . ? . description=dust scaffold_118 . repeat_region 127227 127234 . ? . description=dust scaffold_118 . biological_region 131365 131367 0.999 - . logic_name=eponine scaffold_118 . biological_region 132771 132775 0.999 - . logic_name=eponine scaffold_118 . repeat_region 133208 133222 . ? . description=dust scaffold_118 . repeat_region 134929 134937 . ? . description=dust scaffold_118 ensembl protein_coding_gene 131253 132512 . - . ID=Physo109487;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1180001;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 131253 132512 . - . ID=Physo109487;Parent=Physo109487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 131253 131476 . - 0 ID=Physo109487;Parent=Physo109487;rank=3 scaffold_118 . exon 131253 131476 . - . ID=Physo109487.3;Parent=Physo109487;constitutive=1;ensembl_phase=1;rank=3 scaffold_118 . CDS 131558 132311 . - 0 ID=Physo109487;Parent=Physo109487;rank=2 scaffold_118 . exon 131558 132311 . - . ID=Physo109487.2;Parent=Physo109487;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_118 . CDS 132453 132512 . - 0 ID=Physo109487;Parent=Physo109487;rank=1 scaffold_118 . exon 132453 132512 . - . ID=Physo109487.1;Parent=Physo109487;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 127241 130771 . + . ID=Physo142621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180022;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 127241 130771 . + . ID=Physo142621;Parent=Physo142621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 127241 130771 . + 0 ID=Physo142621;Parent=Physo142621;rank=1 scaffold_118 . exon 127241 130771 . + . ID=Physo142621.1;Parent=Physo142621;constitutive=1;rank=1 scaffold_118 . repeat_region 137831 137875 . ? . description=trf scaffold_118 ensembl protein_coding_gene 136973 137965 . - . ID=Physo142623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180024;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 136973 137965 . - . ID=Physo142623;Parent=Physo142623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 136973 137965 . - 0 ID=Physo142623;Parent=Physo142623;rank=1 scaffold_118 . exon 136973 137965 . - . ID=Physo142623.1;Parent=Physo142623;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 140218 146664 . - . ID=Physo142624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180025;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 140218 146664 . - . ID=Physo142624;Parent=Physo142624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 140218 140382 . - 0 ID=Physo142624;Parent=Physo142624;rank=6 scaffold_118 . exon 140218 140382 . - . ID=Physo142624.6;Parent=Physo142624;constitutive=1;rank=6 scaffold_118 . CDS 140464 141995 . - 0 ID=Physo142624;Parent=Physo142624;rank=5 scaffold_118 . exon 140464 141995 . - . ID=Physo142624.5;Parent=Physo142624;constitutive=1;ensembl_phase=1;rank=5 scaffold_118 . CDS 142533 142693 . - 0 ID=Physo142624;Parent=Physo142624;rank=4 scaffold_118 . exon 142533 142693 . - . ID=Physo142624.4;Parent=Physo142624;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_118 . CDS 142787 143033 . - 0 ID=Physo142624;Parent=Physo142624;rank=3 scaffold_118 . exon 142787 143033 . - . ID=Physo142624.3;Parent=Physo142624;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_118 . CDS 143157 144303 . - 0 ID=Physo142624;Parent=Physo142624;rank=2 scaffold_118 . exon 143157 144303 . - . ID=Physo142624.2;Parent=Physo142624;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_118 . CDS 144799 146664 . - 0 ID=Physo142624;Parent=Physo142624;rank=1 scaffold_118 . biological_region 146340 146343 0.999 + . logic_name=eponine scaffold_118 . biological_region 146395 146399 0.999 - . logic_name=eponine scaffold_118 . biological_region 146457 146459 0.999 - . logic_name=eponine scaffold_118 . biological_region 146572 146574 0.999 - . logic_name=eponine scaffold_118 . biological_region 146606 146612 0.999 + . logic_name=eponine scaffold_118 . biological_region 146626 146630 0.999 - . logic_name=eponine scaffold_118 . biological_region 147067 147067 0.999 - . logic_name=eponine scaffold_118 . exon 144799 146664 . - . ID=Physo142624.1;Parent=Physo142624;constitutive=1;rank=1 scaffold_118 ensembl protein_coding_gene 146979 148342 . + . ID=Physo142625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180026;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 146979 148342 . + . ID=Physo142625;Parent=Physo142625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 146979 147889 . + 0 ID=Physo142625;Parent=Physo142625;rank=1 scaffold_118 . exon 146979 147889 . + . ID=Physo142625.1;Parent=Physo142625;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 . CDS 148067 148248 . + 0 ID=Physo142625;Parent=Physo142625;rank=2 scaffold_118 . exon 148067 148248 . + . ID=Physo142625.2;Parent=Physo142625;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 148296 148342 . + 0 ID=Physo142625;Parent=Physo142625;rank=3 scaffold_118 . exon 148296 148342 . + . ID=Physo142625.3;Parent=Physo142625;constitutive=1;ensembl_phase=1;rank=3 scaffold_118 . repeat_region 155507 155542 . ? . description=trf scaffold_118 ensembl protein_coding_gene 163498 165292 . + . ID=Physo142626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180027;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 163498 165292 . + . ID=Physo142626;Parent=Physo142626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 163498 165006 . + 0 ID=Physo142626;Parent=Physo142626;rank=1 scaffold_118 . exon 163498 165006 . + . ID=Physo142626.1;Parent=Physo142626;constitutive=1;rank=1 scaffold_118 . CDS 165053 165292 . + 0 ID=Physo142626;Parent=Physo142626;rank=2 scaffold_118 . repeat_region 166291 166298 . ? . description=dust scaffold_118 . repeat_region 166636 166643 . ? . description=dust scaffold_118 . repeat_region 169679 169696 . ? . description=dust scaffold_118 . repeat_region 172559 172568 . ? . description=dust scaffold_118 . exon 165053 165292 . + . ID=Physo142626.2;Parent=Physo142626;constitutive=1;rank=2 scaffold_118 ensembl protein_coding_gene 166778 167623 . + . ID=Physo142627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180028;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 166778 167623 . + . ID=Physo142627;Parent=Physo142627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 166778 166789 . + 0 ID=Physo142627;Parent=Physo142627;rank=1 scaffold_118 . exon 166778 166789 . + . ID=Physo142627.1;Parent=Physo142627;constitutive=1;rank=1 scaffold_118 . CDS 166937 166952 . + 0 ID=Physo142627;Parent=Physo142627;rank=2 scaffold_118 . exon 166937 166952 . + . ID=Physo142627.2;Parent=Physo142627;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_118 . CDS 166973 167223 . + 0 ID=Physo142627;Parent=Physo142627;rank=3 scaffold_118 . exon 166973 167223 . + . ID=Physo142627.3;Parent=Physo142627;constitutive=1;ensembl_phase=1;rank=3 scaffold_118 . CDS 167429 167623 . + 0 ID=Physo142627;Parent=Physo142627;rank=4 scaffold_118 . exon 167429 167623 . + . ID=Physo142627.4;Parent=Physo142627;constitutive=1;rank=4 scaffold_118 . biological_region 175679 175680 0.999 + . logic_name=eponine scaffold_118 . biological_region 179137 179139 0.999 - . logic_name=eponine scaffold_118 ensembl protein_coding_gene 174181 174958 . + . ID=Physo142628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180029;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 174181 174958 . + . ID=Physo142628;Parent=Physo142628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 174181 174859 . + 0 ID=Physo142628;Parent=Physo142628;rank=1 scaffold_118 . exon 174181 174859 . + . ID=Physo142628.1;Parent=Physo142628;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_118 . CDS 174906 174958 . + 0 ID=Physo142628;Parent=Physo142628;rank=2 scaffold_118 . exon 174906 174958 . + . ID=Physo142628.2;Parent=Physo142628;constitutive=1;ensembl_phase=1;rank=2 scaffold_118 ensembl protein_coding_gene 175175 176373 . - . ID=Physo142629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180030;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 175175 176373 . - . ID=Physo142629;Parent=Physo142629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . CDS 175175 175448 . - 0 ID=Physo142629;Parent=Physo142629;rank=5 scaffold_118 . exon 175175 175448 . - . ID=Physo142629.5;Parent=Physo142629;constitutive=1;ensembl_phase=2;rank=5 scaffold_118 . CDS 175512 175541 . - 0 ID=Physo142629;Parent=Physo142629;rank=4 scaffold_118 . exon 175512 175541 . - . ID=Physo142629.4;Parent=Physo142629;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_118 . CDS 175669 175796 . - 0 ID=Physo142629;Parent=Physo142629;rank=3 scaffold_118 . exon 175669 175796 . - . ID=Physo142629.3;Parent=Physo142629;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_118 . CDS 175946 176051 . - 0 ID=Physo142629;Parent=Physo142629;rank=2 scaffold_118 . exon 175946 176051 . - . ID=Physo142629.2;Parent=Physo142629;constitutive=1;ensembl_phase=2;rank=2 scaffold_118 . CDS 176150 176373 . - 0 ID=Physo142629;Parent=Physo142629;rank=1 scaffold_118 . exon 176150 176373 . - . ID=Physo142629.1;Parent=Physo142629;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_118 ensembl protein_coding_gene 176861 178816 . + . ID=Physo142630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1180031;logic_name=jgi_physo1_1 scaffold_118 ensembl transcript 176861 178816 . + . ID=Physo142630;Parent=Physo142630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_118 . exon 176861 177139 . + . ID=Physo142630.1;Parent=Physo142630;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_118 . exon 177216 177333 . + . ID=Physo142630.2;Parent=Physo142630;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_118 . CDS 177218 177333 . + 0 ID=Physo142630;Parent=Physo142630;rank=1 scaffold_118 . CDS 177415 178343 . + 0 ID=Physo142630;Parent=Physo142630;rank=2 scaffold_118 . exon 177415 178343 . + . ID=Physo142630.3;Parent=Physo142630;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_118 . CDS 178416 178816 . + 0 ID=Physo142630;Parent=Physo142630;rank=3 scaffold_118 . exon 178416 178816 . + . ID=Physo142630.4;Parent=Physo142630;constitutive=1;ensembl_phase=1;rank=4 scaffold_118 . repeat_region 191723 191932 . ? . description=trf scaffold_118 . repeat_region 194923 194931 . ? . description=dust scaffold_118 . repeat_region 196408 196416 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_113 1 208262 scaffold_113 . repeat_region 567 609 . ? . description=dust scaffold_113 . repeat_region 1946 1986 . ? . description=trf scaffold_113 . repeat_region 3994 4138 . + . description=(TCG)n scaffold_113 . repeat_region 4072 4128 . ? . description=dust scaffold_113 . repeat_region 4072 4129 . ? . description=trf scaffold_113 . biological_region 5707 5708 0.999 + . logic_name=eponine scaffold_113 . biological_region 5798 5802 0.999 - . logic_name=eponine scaffold_113 . repeat_region 9458 10006 . + . description=GypsyPi-1c_I-int scaffold_113 . biological_region 9706 9706 0.999 + . logic_name=eponine scaffold_113 ensembl protein_coding_gene 2972 4577 . - . ID=Physo142364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130001;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 2972 4577 . - . ID=Physo142364;Parent=Physo142364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 2972 3627 . - 0 ID=Physo142364;Parent=Physo142364;rank=3 scaffold_113 . exon 2972 3627 . - . ID=Physo142364.3;Parent=Physo142364;constitutive=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 4021 4368 . - 0 ID=Physo142364;Parent=Physo142364;rank=2 scaffold_113 . exon 4021 4368 . - . ID=Physo142364.2;Parent=Physo142364;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 4562 4577 . - 0 ID=Physo142364;Parent=Physo142364;rank=1 scaffold_113 . exon 4562 4577 . - . ID=Physo142364.1;Parent=Physo142364;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 ensembl protein_coding_gene 8475 14120 . + . ID=Physo142365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130002;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 8475 14120 . + . ID=Physo142365;Parent=Physo142365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 8475 9060 . + 0 ID=Physo142365;Parent=Physo142365;rank=1 scaffold_113 . exon 8475 9060 . + . ID=Physo142365.1;Parent=Physo142365;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 9102 9178 . + 0 ID=Physo142365;Parent=Physo142365;rank=2 scaffold_113 . exon 9102 9178 . + . ID=Physo142365.2;Parent=Physo142365;constitutive=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 9303 9446 . + 0 ID=Physo142365;Parent=Physo142365;rank=3 scaffold_113 . exon 9303 9446 . + . ID=Physo142365.3;Parent=Physo142365;constitutive=1;rank=3 scaffold_113 . CDS 9712 10812 . + 0 ID=Physo142365;Parent=Physo142365;rank=4 scaffold_113 . exon 9712 10812 . + . ID=Physo142365.4;Parent=Physo142365;constitutive=1;rank=4 scaffold_113 . CDS 10929 13146 . + 0 ID=Physo142365;Parent=Physo142365;rank=5 scaffold_113 . CDS 13390 14120 . + 0 ID=Physo142365;Parent=Physo142365;rank=6 scaffold_113 . exon 10929 13146 . + . ID=Physo142365.5;Parent=Physo142365;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_113 . exon 13390 14120 . + . ID=Physo142365.6;Parent=Physo142365;constitutive=1;ensembl_phase=1;rank=6 scaffold_113 . repeat_region 19483 20236 . ? . description=dust scaffold_113 . repeat_region 20684 20745 . ? . description=trf scaffold_113 . biological_region 20892 20898 0.999 + . logic_name=eponine scaffold_113 . biological_region 22018 22020 0.999 + . logic_name=eponine scaffold_113 . biological_region 22195 22199 0.999 - . logic_name=eponine scaffold_113 . biological_region 22291 22291 0.999 - . logic_name=eponine scaffold_113 . repeat_region 22430 22473 . ? . description=trf scaffold_113 . repeat_region 24488 24517 . ? . description=dust scaffold_113 . repeat_region 24488 24517 . ? . description=trf scaffold_113 . repeat_region 25475 25515 . ? . description=dust scaffold_113 . repeat_region 25481 25523 . ? . description=trf scaffold_113 . repeat_region 25585 25602 . ? . description=dust scaffold_113 . repeat_region 25856 25868 . ? . description=dust scaffold_113 . repeat_region 29525 29574 . ? . description=dust scaffold_113 ensembl protein_coding_gene 21176 22745 . + . ID=Physo142366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130003;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 21176 22745 . + . ID=Physo142366;Parent=Physo142366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . exon 21176 21590 . + . ID=Physo142366.1;Parent=Physo142366;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_113 . CDS 21275 21590 . + 0 ID=Physo142366;Parent=Physo142366;rank=1 scaffold_113 . CDS 21632 22487 . + 0 ID=Physo142366;Parent=Physo142366;rank=2 scaffold_113 . exon 21632 22487 . + . ID=Physo142366.2;Parent=Physo142366;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_113 . CDS 22529 22745 . + 0 ID=Physo142366;Parent=Physo142366;rank=3 scaffold_113 . exon 22529 22745 . + . ID=Physo142366.3;Parent=Physo142366;constitutive=1;ensembl_phase=2;rank=3 scaffold_113 ensembl protein_coding_gene 27987 28612 . + . ID=Physo142368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130005;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 27987 28612 . + . ID=Physo142368;Parent=Physo142368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 27987 28332 . + 0 ID=Physo142368;Parent=Physo142368;rank=1 scaffold_113 . exon 27987 28332 . + . ID=Physo142368.1;Parent=Physo142368;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 28452 28612 . + 0 ID=Physo142368;Parent=Physo142368;rank=2 scaffold_113 . exon 28452 28612 . + . ID=Physo142368.2;Parent=Physo142368;constitutive=1;ensembl_phase=1;rank=2 scaffold_113 ensembl protein_coding_gene 22861 25084 . - . ID=Physo158514;biotype=protein_coding;external_name=C_scaffold_113000002;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 22861 25084 . - . ID=Physo158514;Parent=Physo158514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 22861 22882 . - 0 ID=Physo158514;Parent=Physo158514;rank=7 scaffold_113 . exon 22861 22882 . - . ID=Physo158514.7;Parent=Physo158514;constitutive=1;ensembl_phase=2;rank=7 scaffold_113 . CDS 23001 23213 . - 0 ID=Physo158514;Parent=Physo158514;rank=6 scaffold_113 . exon 23001 23213 . - . ID=Physo158514.6;Parent=Physo158514;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_113 . CDS 23363 23443 . - 0 ID=Physo158514;Parent=Physo158514;rank=5 scaffold_113 . exon 23363 23443 . - . ID=Physo158514.5;Parent=Physo158514;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_113 . CDS 23463 23653 . - 0 ID=Physo158514;Parent=Physo158514;rank=4 scaffold_113 . exon 23463 23653 . - . ID=Physo158514.4;Parent=Physo158514;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_113 . CDS 23834 24595 . - 0 ID=Physo158514;Parent=Physo158514;rank=3 scaffold_113 . exon 23834 24595 . - . ID=Physo158514.3;Parent=Physo158514;constitutive=1;rank=3 scaffold_113 . CDS 24617 24794 . - 0 ID=Physo158514;Parent=Physo158514;rank=2 scaffold_113 . exon 24617 24794 . - . ID=Physo158514.2;Parent=Physo158514;constitutive=1;ensembl_phase=2;rank=2 scaffold_113 . CDS 24834 25084 . - 0 ID=Physo158514;Parent=Physo158514;rank=1 scaffold_113 . exon 24834 25084 . - . ID=Physo158514.1;Parent=Physo158514;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 ensembl protein_coding_gene 32244 32450 . - . ID=Physo122744;biotype=protein_coding;external_name=estExt_Genewise1.C_1130001;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 32244 32450 . - . ID=Physo122744;Parent=Physo122744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 32244 32411 . - 0 ID=Physo122744;Parent=Physo122744;rank=1 scaffold_113 . exon 32244 32450 . - . ID=Physo122744.1;Parent=Physo122744;constitutive=1;ensembl_phase=-1;rank=1 scaffold_113 ensembl protein_coding_gene 32761 33786 . - . ID=Physo142369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130006;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 32761 33786 . - . ID=Physo142369;Parent=Physo142369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 32761 33786 . - 0 ID=Physo142369;Parent=Physo142369;rank=1 scaffold_113 . exon 32761 33786 . - . ID=Physo142369.1;Parent=Physo142369;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 38795 40379 . - . ID=Physo142370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130007;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 38795 40379 . - . ID=Physo142370;Parent=Physo142370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 38795 39134 . - 0 ID=Physo142370;Parent=Physo142370;rank=3 scaffold_113 . exon 38795 39134 . - . ID=Physo142370.3;Parent=Physo142370;constitutive=1;ensembl_phase=2;rank=3 scaffold_113 . CDS 39208 39554 . - 0 ID=Physo142370;Parent=Physo142370;rank=2 scaffold_113 . exon 39208 39554 . - . ID=Physo142370.2;Parent=Physo142370;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_113 . CDS 39708 40379 . - 0 ID=Physo142370;Parent=Physo142370;rank=1 scaffold_113 . biological_region 43795 43796 0.999 - . logic_name=eponine scaffold_113 . biological_region 43850 43858 0.999 + . logic_name=eponine scaffold_113 . biological_region 43887 43892 0.999 + . logic_name=eponine scaffold_113 . biological_region 43986 43995 0.999 - . logic_name=eponine scaffold_113 . biological_region 44895 44896 0.999 + . logic_name=eponine scaffold_113 . biological_region 44945 44950 0.999 - . logic_name=eponine scaffold_113 . biological_region 48710 48714 0.999 + . logic_name=eponine scaffold_113 . repeat_region 49083 49099 . ? . description=dust scaffold_113 . exon 39708 40379 . - . ID=Physo142370.1;Parent=Physo142370;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 46916 48047 . + . ID=Physo142372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130009;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 46916 48047 . + . ID=Physo142372;Parent=Physo142372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 46916 47288 . + 0 ID=Physo142372;Parent=Physo142372;rank=1 scaffold_113 . exon 46916 47288 . + . ID=Physo142372.1;Parent=Physo142372;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 47366 47490 . + 0 ID=Physo142372;Parent=Physo142372;rank=2 scaffold_113 . exon 47366 47490 . + . ID=Physo142372.2;Parent=Physo142372;constitutive=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 47556 47678 . + 0 ID=Physo142372;Parent=Physo142372;rank=3 scaffold_113 . exon 47556 47678 . + . ID=Physo142372.3;Parent=Physo142372;constitutive=1;rank=3 scaffold_113 . CDS 47738 47794 . + 0 ID=Physo142372;Parent=Physo142372;rank=4 scaffold_113 . exon 47738 47794 . + . ID=Physo142372.4;Parent=Physo142372;constitutive=1;rank=4 scaffold_113 . CDS 47877 48047 . + 0 ID=Physo142372;Parent=Physo142372;rank=5 scaffold_113 . exon 47877 48047 . + . ID=Physo142372.5;Parent=Physo142372;constitutive=1;rank=5 scaffold_113 ensembl protein_coding_gene 42152 43647 . - . ID=Physo158515;biotype=protein_coding;external_name=C_scaffold_113000003;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 42152 43647 . - . ID=Physo158515;Parent=Physo158515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 42152 42753 . - 0 ID=Physo158515;Parent=Physo158515;rank=3 scaffold_113 . exon 42152 42753 . - . ID=Physo158515.3;Parent=Physo158515;constitutive=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 42841 43444 . - 0 ID=Physo158515;Parent=Physo158515;rank=2 scaffold_113 . exon 42841 43444 . - . ID=Physo158515.2;Parent=Physo158515;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_113 . CDS 43525 43647 . - 0 ID=Physo158515;Parent=Physo158515;rank=1 scaffold_113 . exon 43525 43647 . - . ID=Physo158515.1;Parent=Physo158515;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 44645 46112 . - . ID=Physo158516;biotype=protein_coding;external_name=C_scaffold_113000004;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 44645 46112 . - . ID=Physo158516;Parent=Physo158516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 44645 44888 . - 0 ID=Physo158516;Parent=Physo158516;rank=4 scaffold_113 . exon 44645 44888 . - . ID=Physo158516.4;Parent=Physo158516;constitutive=1;ensembl_phase=2;rank=4 scaffold_113 . CDS 45114 45237 . - 0 ID=Physo158516;Parent=Physo158516;rank=3 scaffold_113 . exon 45114 45237 . - . ID=Physo158516.3;Parent=Physo158516;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_113 . CDS 45356 45923 . - 0 ID=Physo158516;Parent=Physo158516;rank=2 scaffold_113 . exon 45356 45923 . - . ID=Physo158516.2;Parent=Physo158516;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_113 . CDS 45999 46112 . - 0 ID=Physo158516;Parent=Physo158516;rank=1 scaffold_113 . exon 45999 46112 . - . ID=Physo158516.1;Parent=Physo158516;constitutive=1;rank=1 scaffold_113 . repeat_region 51033 51061 . ? . description=trf scaffold_113 . repeat_region 57581 57606 . ? . description=trf scaffold_113 . repeat_region 58025 58063 . ? . description=trf scaffold_113 . repeat_region 58027 58064 . ? . description=trf scaffold_113 ensembl protein_coding_gene 49748 51844 . + . ID=Physo142373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130010;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 49748 51844 . + . ID=Physo142373;Parent=Physo142373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 49748 51844 . + 0 ID=Physo142373;Parent=Physo142373;rank=1 scaffold_113 . exon 49748 51844 . + . ID=Physo142373.1;Parent=Physo142373;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 52053 52575 . - . ID=Physo142374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130011;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 52053 52575 . - . ID=Physo142374;Parent=Physo142374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . exon 52053 52575 . - . ID=Physo142374.1;Parent=Physo142374;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_113 . CDS 52115 52573 . - 0 ID=Physo142374;Parent=Physo142374;rank=1 scaffold_113 ensembl protein_coding_gene 57405 59615 . + . ID=Physo142375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130012;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 57405 59615 . + . ID=Physo142375;Parent=Physo142375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 57405 59534 . + 0 ID=Physo142375;Parent=Physo142375;rank=1 scaffold_113 . exon 57405 59615 . + . ID=Physo142375.1;Parent=Physo142375;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_113 . biological_region 65984 65986 0.999 + . logic_name=eponine scaffold_113 . biological_region 66883 66890 0.999 + . logic_name=eponine scaffold_113 . biological_region 66904 66909 0.999 + . logic_name=eponine scaffold_113 . biological_region 66921 66925 0.999 - . logic_name=eponine scaffold_113 . biological_region 66937 66938 0.999 + . logic_name=eponine scaffold_113 . biological_region 66971 66977 0.999 - . logic_name=eponine scaffold_113 ensembl protein_coding_gene 69157 71994 . + . ID=Physo142377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130014;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 69157 71994 . + . ID=Physo142377;Parent=Physo142377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 69157 69613 . + 0 ID=Physo142377;Parent=Physo142377;rank=1 scaffold_113 . exon 69157 69613 . + . ID=Physo142377.1;Parent=Physo142377;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 69641 69786 . + 0 ID=Physo142377;Parent=Physo142377;rank=2 scaffold_113 . CDS 69873 70848 . + 0 ID=Physo142377;Parent=Physo142377;rank=3 scaffold_113 . CDS 71057 71994 . + 0 ID=Physo142377;Parent=Physo142377;rank=4 scaffold_113 ensembl protein_coding_gene 59791 68362 . - . ID=Physo158518;biotype=protein_coding;external_name=C_scaffold_113000006;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 59791 68362 . - . ID=Physo158518;Parent=Physo158518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 59791 60078 . - 0 ID=Physo158518;Parent=Physo158518;rank=22 scaffold_113 . exon 59791 60078 . - . ID=Physo158518.22;Parent=Physo158518;constitutive=1;rank=22 scaffold_113 . CDS 60103 60222 . - 0 ID=Physo158518;Parent=Physo158518;rank=21 scaffold_113 . exon 60103 60222 . - . ID=Physo158518.21;Parent=Physo158518;constitutive=1;rank=21 scaffold_113 . CDS 60300 60609 . - 0 ID=Physo158518;Parent=Physo158518;rank=20 scaffold_113 . exon 60300 60609 . - . ID=Physo158518.20;Parent=Physo158518;constitutive=1;ensembl_phase=2;rank=20 scaffold_113 . CDS 60630 60727 . - 0 ID=Physo158518;Parent=Physo158518;rank=19 scaffold_113 . exon 60630 60727 . - . ID=Physo158518.19;Parent=Physo158518;constitutive=1;ensembl_end_phase=2;rank=19 scaffold_113 . CDS 60894 61029 . - 0 ID=Physo158518;Parent=Physo158518;rank=18 scaffold_113 . exon 60894 61029 . - . ID=Physo158518.18;Parent=Physo158518;constitutive=1;ensembl_phase=2;rank=18 scaffold_113 . CDS 61204 61706 . - 0 ID=Physo158518;Parent=Physo158518;rank=17 scaffold_113 . exon 61204 61706 . - . ID=Physo158518.17;Parent=Physo158518;constitutive=1;ensembl_end_phase=2;rank=17 scaffold_113 . CDS 61740 61958 . - 0 ID=Physo158518;Parent=Physo158518;rank=16 scaffold_113 . exon 61740 61958 . - . ID=Physo158518.16;Parent=Physo158518;constitutive=1;rank=16 scaffold_113 . CDS 62220 62357 . - 0 ID=Physo158518;Parent=Physo158518;rank=15 scaffold_113 . exon 62220 62357 . - . ID=Physo158518.15;Parent=Physo158518;constitutive=1;rank=15 scaffold_113 . CDS 62619 62968 . - 0 ID=Physo158518;Parent=Physo158518;rank=14 scaffold_113 . exon 62619 62968 . - . ID=Physo158518.14;Parent=Physo158518;constitutive=1;ensembl_phase=1;rank=14 scaffold_113 . CDS 63050 63328 . - 0 ID=Physo158518;Parent=Physo158518;rank=13 scaffold_113 . exon 63050 63328 . - . ID=Physo158518.13;Parent=Physo158518;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_113 . CDS 63428 63847 . - 0 ID=Physo158518;Parent=Physo158518;rank=12 scaffold_113 . exon 63428 63847 . - . ID=Physo158518.12;Parent=Physo158518;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_113 . CDS 63899 64465 . - 0 ID=Physo158518;Parent=Physo158518;rank=11 scaffold_113 . exon 63899 64465 . - . ID=Physo158518.11;Parent=Physo158518;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_113 . CDS 65165 65340 . - 0 ID=Physo158518;Parent=Physo158518;rank=10 scaffold_113 . exon 65165 65340 . - . ID=Physo158518.10;Parent=Physo158518;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_113 . CDS 65371 65775 . - 0 ID=Physo158518;Parent=Physo158518;rank=9 scaffold_113 . exon 65371 65775 . - . ID=Physo158518.9;Parent=Physo158518;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_113 . CDS 65849 65926 . - 0 ID=Physo158518;Parent=Physo158518;rank=8 scaffold_113 . exon 65849 65926 . - . ID=Physo158518.8;Parent=Physo158518;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_113 . CDS 65966 66200 . - 0 ID=Physo158518;Parent=Physo158518;rank=7 scaffold_113 . exon 65966 66200 . - . ID=Physo158518.7;Parent=Physo158518;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_113 . CDS 66225 66797 . - 0 ID=Physo158518;Parent=Physo158518;rank=6 scaffold_113 . exon 66225 66797 . - . ID=Physo158518.6;Parent=Physo158518;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_113 . CDS 66876 67015 . - 0 ID=Physo158518;Parent=Physo158518;rank=5 scaffold_113 . exon 66876 67015 . - . ID=Physo158518.5;Parent=Physo158518;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_113 . CDS 67251 67499 . - 0 ID=Physo158518;Parent=Physo158518;rank=4 scaffold_113 . exon 67251 67499 . - . ID=Physo158518.4;Parent=Physo158518;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_113 . CDS 67679 67780 . - 0 ID=Physo158518;Parent=Physo158518;rank=3 scaffold_113 . exon 67679 67780 . - . ID=Physo158518.3;Parent=Physo158518;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_113 . CDS 68031 68111 . - 0 ID=Physo158518;Parent=Physo158518;rank=2 scaffold_113 . exon 68031 68111 . - . ID=Physo158518.2;Parent=Physo158518;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_113 . CDS 68253 68362 . - 0 ID=Physo158518;Parent=Physo158518;rank=1 scaffold_113 . exon 68253 68362 . - . ID=Physo158518.1;Parent=Physo158518;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 . repeat_region 70595 70641 . ? . description=trf scaffold_113 . repeat_region 71591 71623 . ? . description=trf scaffold_113 . repeat_region 71601 71664 . ? . description=dust scaffold_113 . repeat_region 71732 71774 . ? . description=trf scaffold_113 . repeat_region 71843 71898 . ? . description=trf scaffold_113 . repeat_region 71947 71991 . ? . description=trf scaffold_113 . repeat_region 77123 77130 . ? . description=dust scaffold_113 . exon 69641 69786 . + . ID=Physo142377.2;Parent=Physo142377;constitutive=1;ensembl_phase=1;rank=2 scaffold_113 . exon 69873 70848 . + . ID=Physo142377.3;Parent=Physo142377;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_113 . exon 71057 71994 . + . ID=Physo142377.4;Parent=Physo142377;constitutive=1;ensembl_phase=1;rank=4 scaffold_113 ensembl protein_coding_gene 72578 74279 . - . ID=Physo142378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130015;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 72578 74279 . - . ID=Physo142378;Parent=Physo142378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 72578 73046 . - 0 ID=Physo142378;Parent=Physo142378;rank=4 scaffold_113 . exon 72578 73046 . - . ID=Physo142378.4;Parent=Physo142378;constitutive=1;ensembl_phase=2;rank=4 scaffold_113 . CDS 73111 74000 . - 0 ID=Physo142378;Parent=Physo142378;rank=3 scaffold_113 . exon 73111 74000 . - . ID=Physo142378.3;Parent=Physo142378;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_113 . CDS 74090 74143 . - 0 ID=Physo142378;Parent=Physo142378;rank=2 scaffold_113 . exon 74090 74143 . - . ID=Physo142378.2;Parent=Physo142378;constitutive=1;rank=2 scaffold_113 . CDS 74214 74279 . - 0 ID=Physo142378;Parent=Physo142378;rank=1 scaffold_113 . exon 74214 74279 . - . ID=Physo142378.1;Parent=Physo142378;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 74549 76774 . + . ID=Physo142379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130016;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 74549 76774 . + . ID=Physo142379;Parent=Physo142379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 74549 74588 . + 0 ID=Physo142379;Parent=Physo142379;rank=1 scaffold_113 . exon 74549 74588 . + . ID=Physo142379.1;Parent=Physo142379;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 74660 75235 . + 0 ID=Physo142379;Parent=Physo142379;rank=2 scaffold_113 . exon 74660 75235 . + . ID=Physo142379.2;Parent=Physo142379;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 75298 75792 . + 0 ID=Physo142379;Parent=Physo142379;rank=3 scaffold_113 . exon 75298 75792 . + . ID=Physo142379.3;Parent=Physo142379;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 75948 76774 . + 0 ID=Physo142379;Parent=Physo142379;rank=4 scaffold_113 . exon 75948 76774 . + . ID=Physo142379.4;Parent=Physo142379;constitutive=1;ensembl_phase=1;rank=4 scaffold_113 ensembl protein_coding_gene 79105 79951 . - . ID=Physo142380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130017;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 79105 79951 . - . ID=Physo142380;Parent=Physo142380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 79105 79132 . - 0 ID=Physo142380;Parent=Physo142380;rank=4 scaffold_113 . exon 79105 79132 . - . ID=Physo142380.4;Parent=Physo142380;constitutive=1;ensembl_phase=2;rank=4 scaffold_113 . CDS 79229 79384 . - 0 ID=Physo142380;Parent=Physo142380;rank=3 scaffold_113 . exon 79229 79384 . - . ID=Physo142380.3;Parent=Physo142380;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_113 . CDS 79447 79520 . - 0 ID=Physo142380;Parent=Physo142380;rank=2 scaffold_113 . CDS 79724 79951 . - 0 ID=Physo142380;Parent=Physo142380;rank=1 scaffold_113 . biological_region 82032 82033 0.999 - . logic_name=eponine scaffold_113 . biological_region 82466 82467 0.999 + . logic_name=eponine scaffold_113 . biological_region 87088 87092 0.999 + . logic_name=eponine scaffold_113 ensembl protein_coding_gene 80081 80878 . - . ID=Physo109471;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1130001;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 80081 80878 . - . ID=Physo109471;Parent=Physo109471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 80081 80097 . - 0 ID=Physo109471;Parent=Physo109471;rank=2 scaffold_113 . exon 80081 80097 . - . ID=Physo109471.2;Parent=Physo109471;constitutive=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 80134 80878 . - 0 ID=Physo109471;Parent=Physo109471;rank=1 scaffold_113 . exon 80134 80878 . - . ID=Physo109471.1;Parent=Physo109471;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . exon 79447 79520 . - . ID=Physo142380.2;Parent=Physo142380;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_113 . exon 79724 79951 . - . ID=Physo142380.1;Parent=Physo142380;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 81230 82322 . + . ID=Physo142382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130019;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 81230 82322 . + . ID=Physo142382;Parent=Physo142382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . exon 81230 81500 . + . ID=Physo142382.1;Parent=Physo142382;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_113 . exon 81696 82322 . + . ID=Physo142382.2;Parent=Physo142382;constitutive=1;ensembl_phase=-1;rank=2 scaffold_113 . CDS 81756 82322 . + 0 ID=Physo142382;Parent=Physo142382;rank=1 scaffold_113 ensembl protein_coding_gene 85416 87205 . - . ID=Physo142383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130020;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 85416 87205 . - . ID=Physo142383;Parent=Physo142383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . exon 85416 87205 . - . ID=Physo142383.1;Parent=Physo142383;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_113 . CDS 85577 87178 . - 0 ID=Physo142383;Parent=Physo142383;rank=1 scaffold_113 ensembl protein_coding_gene 90943 102951 . - . ID=Physo122771;biotype=protein_coding;external_name=estExt_Genewise1.C_1130028;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 90943 102951 . - . ID=Physo122771;Parent=Physo122771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 90943 101453 . - 0 ID=Physo122771;Parent=Physo122771;rank=3 scaffold_113 . exon 90943 101453 . - . ID=Physo122771.3;Parent=Physo122771;constitutive=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 101517 101897 . - 0 ID=Physo122771;Parent=Physo122771;rank=2 scaffold_113 . CDS 102108 102837 . - 0 ID=Physo122771;Parent=Physo122771;rank=1 scaffold_113 ensembl protein_coding_gene 89738 90697 . + . ID=Physo142384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130021;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 89738 90697 . + . ID=Physo142384;Parent=Physo142384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 89738 89925 . + 0 ID=Physo142384;Parent=Physo142384;rank=1 scaffold_113 . exon 89738 89925 . + . ID=Physo142384.1;Parent=Physo142384;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 . CDS 90016 90697 . + 0 ID=Physo142384;Parent=Physo142384;rank=2 scaffold_113 . exon 90016 90697 . + . ID=Physo142384.2;Parent=Physo142384;constitutive=1;ensembl_phase=2;rank=2 scaffold_113 . biological_region 105640 105641 0.999 + . logic_name=eponine scaffold_113 . biological_region 105713 105718 0.999 - . logic_name=eponine scaffold_113 . biological_region 106071 106076 0.999 + . logic_name=eponine scaffold_113 . biological_region 106162 106172 0.999 - . logic_name=eponine scaffold_113 . biological_region 106345 106348 0.999 + . logic_name=eponine scaffold_113 . biological_region 106403 106405 0.999 - . logic_name=eponine scaffold_113 . biological_region 106411 106412 0.999 + . logic_name=eponine scaffold_113 . biological_region 106457 106459 0.999 + . logic_name=eponine scaffold_113 . biological_region 106479 106481 0.999 - . logic_name=eponine scaffold_113 . biological_region 107285 107289 0.999 - . logic_name=eponine scaffold_113 . exon 101517 101897 . - . ID=Physo122771.2;Parent=Physo122771;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_113 . exon 102108 102951 . - . ID=Physo122771.1;Parent=Physo122771;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_113 ensembl protein_coding_gene 106780 107373 . - . ID=Physo142389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130026;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 106780 107373 . - . ID=Physo142389;Parent=Physo142389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 106780 107373 . - 0 ID=Physo142389;Parent=Physo142389;rank=1 scaffold_113 . exon 106780 107373 . - . ID=Physo142389.1;Parent=Physo142389;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 107523 108617 . + . ID=Physo142390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130027;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 107523 108617 . + . ID=Physo142390;Parent=Physo142390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 107523 107915 . + 0 ID=Physo142390;Parent=Physo142390;rank=1 scaffold_113 . exon 107523 107915 . + . ID=Physo142390.1;Parent=Physo142390;constitutive=1;rank=1 scaffold_113 . CDS 107987 108541 . + 0 ID=Physo142390;Parent=Physo142390;rank=2 scaffold_113 . exon 107987 108617 . + . ID=Physo142390.2;Parent=Physo142390;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_113 . repeat_region 113722 113730 . ? . description=dust scaffold_113 . repeat_region 114177 114198 . ? . description=trf scaffold_113 . repeat_region 114302 114309 . ? . description=dust scaffold_113 ensembl protein_coding_gene 111749 112679 . - . ID=Physo142391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130028;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 111749 112679 . - . ID=Physo142391;Parent=Physo142391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 111749 111794 . - 0 ID=Physo142391;Parent=Physo142391;rank=2 scaffold_113 . exon 111749 111794 . - . ID=Physo142391.2;Parent=Physo142391;constitutive=1;ensembl_phase=2;rank=2 scaffold_113 . CDS 111841 112679 . - 0 ID=Physo142391;Parent=Physo142391;rank=1 scaffold_113 . exon 111841 112679 . - . ID=Physo142391.1;Parent=Physo142391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 ensembl protein_coding_gene 113831 119613 . + . ID=Physo158523;biotype=protein_coding;external_name=C_scaffold_113000011;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 113831 119613 . + . ID=Physo158523;Parent=Physo158523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 113831 113915 . + 0 ID=Physo158523;Parent=Physo158523;rank=1 scaffold_113 . exon 113831 113915 . + . ID=Physo158523.1;Parent=Physo158523;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 114015 114141 . + 0 ID=Physo158523;Parent=Physo158523;rank=2 scaffold_113 . exon 114015 114141 . + . ID=Physo158523.2;Parent=Physo158523;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_113 . CDS 115124 115421 . + 0 ID=Physo158523;Parent=Physo158523;rank=3 scaffold_113 . exon 115124 115421 . + . ID=Physo158523.3;Parent=Physo158523;constitutive=1;ensembl_phase=2;rank=3 scaffold_113 . CDS 115443 115793 . + 0 ID=Physo158523;Parent=Physo158523;rank=4 scaffold_113 . exon 115443 115793 . + . ID=Physo158523.4;Parent=Physo158523;constitutive=1;rank=4 scaffold_113 . CDS 115857 116587 . + 0 ID=Physo158523;Parent=Physo158523;rank=5 scaffold_113 . exon 115857 116587 . + . ID=Physo158523.5;Parent=Physo158523;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_113 . CDS 116669 117107 . + 0 ID=Physo158523;Parent=Physo158523;rank=6 scaffold_113 . exon 116669 117107 . + . ID=Physo158523.6;Parent=Physo158523;constitutive=1;ensembl_phase=2;rank=6 scaffold_113 . CDS 117381 117570 . + 0 ID=Physo158523;Parent=Physo158523;rank=7 scaffold_113 . exon 117381 117570 . + . ID=Physo158523.7;Parent=Physo158523;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_113 . CDS 117595 118050 . + 0 ID=Physo158523;Parent=Physo158523;rank=8 scaffold_113 . exon 117595 118050 . + . ID=Physo158523.8;Parent=Physo158523;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_113 . CDS 118136 118604 . + 0 ID=Physo158523;Parent=Physo158523;rank=9 scaffold_113 . exon 118136 118604 . + . ID=Physo158523.9;Parent=Physo158523;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_113 . CDS 118672 118803 . + 0 ID=Physo158523;Parent=Physo158523;rank=10 scaffold_113 . exon 118672 118803 . + . ID=Physo158523.10;Parent=Physo158523;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_113 . CDS 118885 118968 . + 0 ID=Physo158523;Parent=Physo158523;rank=11 scaffold_113 . exon 118885 118968 . + . ID=Physo158523.11;Parent=Physo158523;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_113 . CDS 119040 119180 . + 0 ID=Physo158523;Parent=Physo158523;rank=12 scaffold_113 . CDS 119259 119310 . + 0 ID=Physo158523;Parent=Physo158523;rank=13 scaffold_113 . CDS 119390 119613 . + 0 ID=Physo158523;Parent=Physo158523;rank=14 scaffold_113 . biological_region 124606 124616 0.999 + . logic_name=eponine scaffold_113 . exon 119040 119180 . + . ID=Physo158523.12;Parent=Physo158523;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_113 . exon 119259 119310 . + . ID=Physo158523.13;Parent=Physo158523;constitutive=1;ensembl_phase=2;rank=13 scaffold_113 . exon 119390 119613 . + . ID=Physo158523.14;Parent=Physo158523;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_113 . repeat_region 130574 130581 . ? . description=dust scaffold_113 . repeat_region 132726 132766 . ? . description=trf scaffold_113 . repeat_region 134326 134336 . ? . description=dust scaffold_113 . biological_region 147014 147015 0.999 - . logic_name=eponine scaffold_113 . repeat_region 151766 151803 . ? . description=trf scaffold_113 . repeat_region 151892 151901 . ? . description=dust scaffold_113 . biological_region 161287 161289 0.999 + . logic_name=eponine scaffold_113 . biological_region 161382 161385 0.999 - . logic_name=eponine scaffold_113 . biological_region 161930 161934 0.999 + . logic_name=eponine scaffold_113 . biological_region 162601 162601 0.999 + . logic_name=eponine scaffold_113 . repeat_region 163099 165419 . - . description=GypsyPi-1c_I-int scaffold_113 . biological_region 165857 165859 0.999 - . logic_name=eponine scaffold_113 . biological_region 166330 166333 0.999 - . logic_name=eponine scaffold_113 ensembl protein_coding_gene 161020 161385 . + . ID=Physo142393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130030;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 161020 161385 . + . ID=Physo142393;Parent=Physo142393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 161020 161385 . + 0 ID=Physo142393;Parent=Physo142393;rank=1 scaffold_113 . exon 161020 161385 . + . ID=Physo142393.1;Parent=Physo142393;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 162873 165865 . - . ID=Physo142394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130031;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 162873 165865 . - . ID=Physo142394;Parent=Physo142394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 162873 163271 . - 0 ID=Physo142394;Parent=Physo142394;rank=6 scaffold_113 . exon 162873 163271 . - . ID=Physo142394.6;Parent=Physo142394;constitutive=1;rank=6 scaffold_113 . CDS 163470 163568 . - 0 ID=Physo142394;Parent=Physo142394;rank=5 scaffold_113 . exon 163470 163568 . - . ID=Physo142394.5;Parent=Physo142394;constitutive=1;rank=5 scaffold_113 . CDS 163657 163673 . - 0 ID=Physo142394;Parent=Physo142394;rank=4 scaffold_113 . exon 163657 163673 . - . ID=Physo142394.4;Parent=Physo142394;constitutive=1;ensembl_phase=1;rank=4 scaffold_113 . CDS 163724 164665 . - 0 ID=Physo142394;Parent=Physo142394;rank=3 scaffold_113 . exon 163724 164665 . - . ID=Physo142394.3;Parent=Physo142394;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_113 . CDS 164686 165212 . - 0 ID=Physo142394;Parent=Physo142394;rank=2 scaffold_113 . exon 164686 165212 . - . ID=Physo142394.2;Parent=Physo142394;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_113 . CDS 165453 165865 . - 0 ID=Physo142394;Parent=Physo142394;rank=1 scaffold_113 . exon 165453 165865 . - . ID=Physo142394.1;Parent=Physo142394;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 . repeat_region 170784 170807 . ? . description=dust scaffold_113 . repeat_region 173936 174127 . ? . description=trf scaffold_113 . repeat_region 174142 175722 . ? . description=dust scaffold_113 . repeat_region 177872 177879 . ? . description=dust scaffold_113 ensembl protein_coding_gene 176305 177147 . + . ID=Physo142395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130032;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 176305 177147 . + . ID=Physo142395;Parent=Physo142395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 176305 177147 . + 0 ID=Physo142395;Parent=Physo142395;rank=1 scaffold_113 . exon 176305 177147 . + . ID=Physo142395.1;Parent=Physo142395;constitutive=1;rank=1 scaffold_113 . repeat_region 188422 188471 . ? . description=dust scaffold_113 . repeat_region 189840 189974 . ? . description=dust scaffold_113 . repeat_region 194305 194328 . ? . description=trf scaffold_113 . biological_region 194741 194743 0.999 + . logic_name=eponine scaffold_113 . biological_region 194886 194892 0.999 - . logic_name=eponine scaffold_113 . repeat_region 196283 196334 . ? . description=trf scaffold_113 . repeat_region 196805 196812 . ? . description=dust scaffold_113 . repeat_region 198291 198299 . ? . description=dust scaffold_113 ensembl protein_coding_gene 188617 189298 . + . ID=Physo142396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130033;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 188617 189298 . + . ID=Physo142396;Parent=Physo142396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 188617 188645 . + 0 ID=Physo142396;Parent=Physo142396;rank=1 scaffold_113 . exon 188617 188645 . + . ID=Physo142396.1;Parent=Physo142396;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_113 . CDS 188677 188917 . + 0 ID=Physo142396;Parent=Physo142396;rank=2 scaffold_113 . exon 188677 188917 . + . ID=Physo142396.2;Parent=Physo142396;constitutive=1;ensembl_phase=2;rank=2 scaffold_113 . CDS 188979 189040 . + 0 ID=Physo142396;Parent=Physo142396;rank=3 scaffold_113 . exon 188979 189040 . + . ID=Physo142396.3;Parent=Physo142396;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_113 . CDS 189082 189298 . + 0 ID=Physo142396;Parent=Physo142396;rank=4 scaffold_113 . exon 189082 189298 . + . ID=Physo142396.4;Parent=Physo142396;constitutive=1;ensembl_phase=2;rank=4 scaffold_113 ensembl protein_coding_gene 194636 194944 . + . ID=Physo142397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130034;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 194636 194944 . + . ID=Physo142397;Parent=Physo142397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 194636 194944 . + 0 ID=Physo142397;Parent=Physo142397;rank=1 scaffold_113 . exon 194636 194944 . + . ID=Physo142397.1;Parent=Physo142397;constitutive=1;rank=1 scaffold_113 ensembl protein_coding_gene 196091 196465 . - . ID=Physo142398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130035;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 196091 196465 . - . ID=Physo142398;Parent=Physo142398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 196091 196465 . - 0 ID=Physo142398;Parent=Physo142398;rank=1 scaffold_113 . exon 196091 196465 . - . ID=Physo142398.1;Parent=Physo142398;constitutive=1;rank=1 scaffold_113 . repeat_region 201973 203264 . + . description=GypsyPi-1c_I-int scaffold_113 . repeat_region 204924 206174 . + . description=GypsyPi-1c_I-int scaffold_113 ensembl protein_coding_gene 199883 202317 . + . ID=Physo142399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130036;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 199883 202317 . + . ID=Physo142399;Parent=Physo142399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 199883 200846 . + 0 ID=Physo142399;Parent=Physo142399;rank=1 scaffold_113 . exon 199883 200846 . + . ID=Physo142399.1;Parent=Physo142399;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 201340 201576 . + 0 ID=Physo142399;Parent=Physo142399;rank=2 scaffold_113 . exon 201340 201576 . + . ID=Physo142399.2;Parent=Physo142399;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 201689 202317 . + 0 ID=Physo142399;Parent=Physo142399;rank=3 scaffold_113 . exon 201689 202317 . + . ID=Physo142399.3;Parent=Physo142399;constitutive=1;ensembl_phase=1;rank=3 scaffold_113 ensembl protein_coding_gene 204930 207423 . + . ID=Physo142400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1130037;logic_name=jgi_physo1_1 scaffold_113 ensembl transcript 204930 207423 . + . ID=Physo142400;Parent=Physo142400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_113 . CDS 204930 205776 . + 0 ID=Physo142400;Parent=Physo142400;rank=1 scaffold_113 . exon 204930 205776 . + . ID=Physo142400.1;Parent=Physo142400;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_113 . CDS 206020 206216 . + 0 ID=Physo142400;Parent=Physo142400;rank=2 scaffold_113 . exon 206020 206216 . + . ID=Physo142400.2;Parent=Physo142400;constitutive=1;ensembl_phase=1;rank=2 scaffold_113 . CDS 206236 206336 . + 0 ID=Physo142400;Parent=Physo142400;rank=3 scaffold_113 . exon 206236 206336 . + . ID=Physo142400.3;Parent=Physo142400;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_113 . CDS 206964 207423 . + 0 ID=Physo142400;Parent=Physo142400;rank=4 scaffold_113 . exon 206964 207423 . + . ID=Physo142400.4;Parent=Physo142400;constitutive=1;ensembl_phase=2;rank=4 ##gff-version 3 ##sequence-region scaffold_112 1 238773 scaffold_112 . biological_region 690 697 0.999 + . logic_name=eponine scaffold_112 . biological_region 2034 2034 0.999 + . logic_name=eponine scaffold_112 . biological_region 2041 2043 0.999 - . logic_name=eponine scaffold_112 . biological_region 2145 2150 0.999 - . logic_name=eponine scaffold_112 . repeat_region 3511 3555 . ? . description=trf scaffold_112 . biological_region 4372 4373 0.999 + . logic_name=eponine scaffold_112 . biological_region 4715 4719 0.999 + . logic_name=eponine scaffold_112 . biological_region 5118 5124 0.999 + . logic_name=eponine scaffold_112 . repeat_region 6595 6637 . ? . description=dust scaffold_112 . repeat_region 6596 6637 . ? . description=trf scaffold_112 . biological_region 7467 7470 0.999 + . logic_name=eponine scaffold_112 . repeat_region 7772 7820 . ? . description=trf scaffold_112 . biological_region 8188 8190 0.999 + . logic_name=eponine scaffold_112 . biological_region 8273 8273 0.999 - . logic_name=eponine scaffold_112 . repeat_region 9876 9913 . ? . description=dust scaffold_112 ensembl protein_coding_gene 345 1916 . - . ID=Physo109465;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1120001;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 345 1916 . - . ID=Physo109465;Parent=Physo109465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . exon 345 1916 . - . ID=Physo109465.1;Parent=Physo109465;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_112 . CDS 405 1916 . - 0 ID=Physo109465;Parent=Physo109465;rank=1 scaffold_112 ensembl protein_coding_gene 4297 6064 . + . ID=Physo109466;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1120002;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 4297 6064 . + . ID=Physo109466;Parent=Physo109466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . exon 4297 4340 . + . ID=Physo109466.1;Parent=Physo109466;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_112 . exon 4545 6064 . + . ID=Physo109466.2;Parent=Physo109466;constitutive=1;ensembl_phase=-1;rank=2 scaffold_112 . CDS 4547 6064 . + 0 ID=Physo109466;Parent=Physo109466;rank=1 scaffold_112 ensembl protein_coding_gene 8039 8371 . - . ID=Physo109467;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1120003;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 8039 8371 . - . ID=Physo109467;Parent=Physo109467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 8039 8371 . - 0 ID=Physo109467;Parent=Physo109467;rank=1 scaffold_112 . exon 8039 8371 . - . ID=Physo109467.1;Parent=Physo109467;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 6335 7821 . + . ID=Physo142319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120003;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 6335 7821 . + . ID=Physo142319;Parent=Physo142319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 6335 6376 . + 0 ID=Physo142319;Parent=Physo142319;rank=1 scaffold_112 . exon 6335 6376 . + . ID=Physo142319.1;Parent=Physo142319;constitutive=1;rank=1 scaffold_112 . CDS 6538 7181 . + 0 ID=Physo142319;Parent=Physo142319;rank=2 scaffold_112 . exon 6538 7181 . + . ID=Physo142319.2;Parent=Physo142319;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_112 . CDS 7350 7821 . + 0 ID=Physo142319;Parent=Physo142319;rank=3 scaffold_112 . exon 7350 7821 . + . ID=Physo142319.3;Parent=Physo142319;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 ensembl protein_coding_gene 9429 10263 . + . ID=Physo142321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120005;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 9429 10263 . + . ID=Physo142321;Parent=Physo142321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 9429 9535 . + 0 ID=Physo142321;Parent=Physo142321;rank=1 scaffold_112 . exon 9429 9535 . + . ID=Physo142321.1;Parent=Physo142321;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 9603 9871 . + 0 ID=Physo142321;Parent=Physo142321;rank=2 scaffold_112 . exon 9603 9871 . + . ID=Physo142321.2;Parent=Physo142321;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 9947 10081 . + 0 ID=Physo142321;Parent=Physo142321;rank=3 scaffold_112 . exon 9947 10081 . + . ID=Physo142321.3;Parent=Physo142321;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_112 . CDS 10229 10263 . + 0 ID=Physo142321;Parent=Physo142321;rank=4 scaffold_112 . repeat_region 13540 19300 . - . description=Sola3-1_PS scaffold_112 . exon 10229 10263 . + . ID=Physo142321.4;Parent=Physo142321;constitutive=1;ensembl_phase=1;rank=4 scaffold_112 . biological_region 21538 21543 0.999 - . logic_name=eponine scaffold_112 . biological_region 22182 22183 0.999 + . logic_name=eponine scaffold_112 . biological_region 22224 22226 0.999 + . logic_name=eponine scaffold_112 . biological_region 22260 22264 0.999 + . logic_name=eponine scaffold_112 . biological_region 22815 22817 0.999 - . logic_name=eponine scaffold_112 . biological_region 24620 24624 0.999 + . logic_name=eponine scaffold_112 . repeat_region 25149 25156 . ? . description=dust scaffold_112 . repeat_region 28905 28935 . ? . description=dust scaffold_112 . repeat_region 29679 29694 . ? . description=dust scaffold_112 ensembl protein_coding_gene 22474 23854 . - . ID=Physo109468;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1120004;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 22474 23854 . - . ID=Physo109468;Parent=Physo109468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . exon 22474 23854 . - . ID=Physo109468.1;Parent=Physo109468;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_112 . CDS 22561 23805 . - 0 ID=Physo109468;Parent=Physo109468;rank=1 scaffold_112 ensembl protein_coding_gene 21156 22105 . + . ID=Physo142322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120006;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 21156 22105 . + . ID=Physo142322;Parent=Physo142322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . exon 21156 22105 . + . ID=Physo142322.1;Parent=Physo142322;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_112 . CDS 21166 21861 . + 0 ID=Physo142322;Parent=Physo142322;rank=1 scaffold_112 ensembl protein_coding_gene 25181 26650 . - . ID=Physo142324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120008;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 25181 26650 . - . ID=Physo142324;Parent=Physo142324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 25181 25234 . - 0 ID=Physo142324;Parent=Physo142324;rank=3 scaffold_112 . exon 25181 25234 . - . ID=Physo142324.3;Parent=Physo142324;constitutive=1;rank=3 scaffold_112 . CDS 25554 26145 . - 0 ID=Physo142324;Parent=Physo142324;rank=2 scaffold_112 . exon 25554 26145 . - . ID=Physo142324.2;Parent=Physo142324;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 26331 26650 . - 0 ID=Physo142324;Parent=Physo142324;rank=1 scaffold_112 . exon 26331 26650 . - . ID=Physo142324.1;Parent=Physo142324;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . repeat_region 32607 32652 . ? . description=trf scaffold_112 . repeat_region 38837 39142 . - . description=GypsyPi-1c_LTR scaffold_112 ensembl protein_coding_gene 30292 31239 . - . ID=Physo142325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120009;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 30292 31239 . - . ID=Physo142325;Parent=Physo142325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 30292 31239 . - 0 ID=Physo142325;Parent=Physo142325;rank=1 scaffold_112 . exon 30292 31239 . - . ID=Physo142325.1;Parent=Physo142325;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 32652 36356 . + . ID=Physo142326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120010;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 32652 36356 . + . ID=Physo142326;Parent=Physo142326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 32652 33158 . + 0 ID=Physo142326;Parent=Physo142326;rank=1 scaffold_112 . exon 32652 33158 . + . ID=Physo142326.1;Parent=Physo142326;constitutive=1;rank=1 scaffold_112 . CDS 33328 33410 . + 0 ID=Physo142326;Parent=Physo142326;rank=2 scaffold_112 . exon 33328 33410 . + . ID=Physo142326.2;Parent=Physo142326;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_112 . CDS 33726 34272 . + 0 ID=Physo142326;Parent=Physo142326;rank=3 scaffold_112 . exon 33726 34272 . + . ID=Physo142326.3;Parent=Physo142326;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 34309 35055 . + 0 ID=Physo142326;Parent=Physo142326;rank=4 scaffold_112 . exon 34309 35055 . + . ID=Physo142326.4;Parent=Physo142326;constitutive=1;rank=4 scaffold_112 . CDS 35276 35461 . + 0 ID=Physo142326;Parent=Physo142326;rank=5 scaffold_112 . exon 35276 35461 . + . ID=Physo142326.5;Parent=Physo142326;constitutive=1;rank=5 scaffold_112 . CDS 35507 36157 . + 0 ID=Physo142326;Parent=Physo142326;rank=6 scaffold_112 . exon 35507 36157 . + . ID=Physo142326.6;Parent=Physo142326;constitutive=1;rank=6 scaffold_112 . CDS 36210 36356 . + 0 ID=Physo142326;Parent=Physo142326;rank=7 scaffold_112 . exon 36210 36356 . + . ID=Physo142326.7;Parent=Physo142326;constitutive=1;rank=7 scaffold_112 . biological_region 40165 40167 0.999 - . logic_name=eponine scaffold_112 . repeat_region 40648 40734 . - . description=GypsyPi-1c_I-int scaffold_112 . biological_region 41351 41353 0.999 - . logic_name=eponine scaffold_112 . repeat_region 41579 41763 . - . description=GypsyPi-1c_I-int scaffold_112 . repeat_region 41735 43872 . - . description=GypsyPi-1c_I-int scaffold_112 . biological_region 46468 46471 0.999 + . logic_name=eponine scaffold_112 . biological_region 46515 46519 0.999 + . logic_name=eponine scaffold_112 . biological_region 46532 46533 0.999 + . logic_name=eponine scaffold_112 . biological_region 46560 46561 0.999 + . logic_name=eponine scaffold_112 . biological_region 46579 46586 0.999 - . logic_name=eponine scaffold_112 . biological_region 46640 46645 0.999 + . logic_name=eponine scaffold_112 . biological_region 46655 46660 0.999 + . logic_name=eponine scaffold_112 . biological_region 46678 46680 0.999 - . logic_name=eponine scaffold_112 . biological_region 46822 46827 0.999 - . logic_name=eponine scaffold_112 . biological_region 48798 48800 0.999 + . logic_name=eponine scaffold_112 ensembl protein_coding_gene 43058 43785 . - . ID=Physo142327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120011;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 43058 43785 . - . ID=Physo142327;Parent=Physo142327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 43058 43348 . - 0 ID=Physo142327;Parent=Physo142327;rank=2 scaffold_112 . exon 43058 43348 . - . ID=Physo142327.2;Parent=Physo142327;constitutive=1;rank=2 scaffold_112 . CDS 43522 43785 . - 0 ID=Physo142327;Parent=Physo142327;rank=1 scaffold_112 . exon 43522 43785 . - . ID=Physo142327.1;Parent=Physo142327;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 46485 51352 . + . ID=Physo142328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120012;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 46485 51352 . + . ID=Physo142328;Parent=Physo142328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 46485 51104 . + 0 ID=Physo142328;Parent=Physo142328;rank=1 scaffold_112 . exon 46485 51352 . + . ID=Physo142328.1;Parent=Physo142328;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_112 . repeat_region 55618 55635 . ? . description=dust scaffold_112 ensembl protein_coding_gene 51406 52228 . - . ID=Physo142329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120013;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 51406 52228 . - . ID=Physo142329;Parent=Physo142329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 51406 51972 . - 0 ID=Physo142329;Parent=Physo142329;rank=2 scaffold_112 . exon 51406 51972 . - . ID=Physo142329.2;Parent=Physo142329;constitutive=1;rank=2 scaffold_112 . CDS 52037 52228 . - 0 ID=Physo142329;Parent=Physo142329;rank=1 scaffold_112 . exon 52037 52228 . - . ID=Physo142329.1;Parent=Physo142329;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 56181 57724 . + . ID=Physo142331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120015;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 56181 57724 . + . ID=Physo142331;Parent=Physo142331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 56181 57115 . + 0 ID=Physo142331;Parent=Physo142331;rank=1 scaffold_112 . exon 56181 57115 . + . ID=Physo142331.1;Parent=Physo142331;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 57338 57596 . + 0 ID=Physo142331;Parent=Physo142331;rank=2 scaffold_112 . exon 57338 57596 . + . ID=Physo142331.2;Parent=Physo142331;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 57716 57724 . + 0 ID=Physo142331;Parent=Physo142331;rank=3 scaffold_112 . exon 57716 57724 . + . ID=Physo142331.3;Parent=Physo142331;constitutive=1;rank=3 scaffold_112 ensembl protein_coding_gene 52418 54821 . + . ID=Physo158512;biotype=protein_coding;external_name=C_scaffold_112000003;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 52418 54821 . + . ID=Physo158512;Parent=Physo158512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 52418 52668 . + 0 ID=Physo158512;Parent=Physo158512;rank=1 scaffold_112 . exon 52418 52668 . + . ID=Physo158512.1;Parent=Physo158512;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 52744 53688 . + 0 ID=Physo158512;Parent=Physo158512;rank=2 scaffold_112 . exon 52744 53688 . + . ID=Physo158512.2;Parent=Physo158512;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_112 . CDS 54038 54337 . + 0 ID=Physo158512;Parent=Physo158512;rank=3 scaffold_112 . exon 54038 54337 . + . ID=Physo158512.3;Parent=Physo158512;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_112 . CDS 54359 54821 . + 0 ID=Physo158512;Parent=Physo158512;rank=4 scaffold_112 . exon 54359 54821 . + . ID=Physo158512.4;Parent=Physo158512;constitutive=1;ensembl_phase=2;rank=4 scaffold_112 . biological_region 61162 61163 0.999 - . logic_name=eponine scaffold_112 . biological_region 62404 62405 0.999 - . logic_name=eponine scaffold_112 . biological_region 62440 62443 0.999 - . logic_name=eponine scaffold_112 ensembl protein_coding_gene 59972 60977 . + . ID=Physo142332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120016;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 59972 60977 . + . ID=Physo142332;Parent=Physo142332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 59972 60903 . + 0 ID=Physo142332;Parent=Physo142332;rank=1 scaffold_112 . exon 59972 60903 . + . ID=Physo142332.1;Parent=Physo142332;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 60971 60977 . + 0 ID=Physo142332;Parent=Physo142332;rank=2 scaffold_112 . exon 60971 60977 . + . ID=Physo142332.2;Parent=Physo142332;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 ensembl protein_coding_gene 62902 64781 . + . ID=Physo142333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120017;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 62902 64781 . + . ID=Physo142333;Parent=Physo142333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 62902 62914 . + 0 ID=Physo142333;Parent=Physo142333;rank=1 scaffold_112 . exon 62902 62914 . + . ID=Physo142333.1;Parent=Physo142333;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 . CDS 63094 64781 . + 0 ID=Physo142333;Parent=Physo142333;rank=2 scaffold_112 . exon 63094 64781 . + . ID=Physo142333.2;Parent=Physo142333;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 ensembl protein_coding_gene 64952 66034 . + . ID=Physo142334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120018;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 64952 66034 . + . ID=Physo142334;Parent=Physo142334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 64952 66034 . + 0 ID=Physo142334;Parent=Physo142334;rank=1 scaffold_112 . exon 64952 66034 . + . ID=Physo142334.1;Parent=Physo142334;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 66504 67971 . - . ID=Physo142335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120019;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 66504 67971 . - . ID=Physo142335;Parent=Physo142335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 66504 66521 . - 0 ID=Physo142335;Parent=Physo142335;rank=2 scaffold_112 . exon 66504 66521 . - . ID=Physo142335.2;Parent=Physo142335;constitutive=1;rank=2 scaffold_112 . CDS 66827 67933 . - 0 ID=Physo142335;Parent=Physo142335;rank=1 scaffold_112 . exon 66827 67971 . - . ID=Physo142335.1;Parent=Physo142335;constitutive=1;ensembl_phase=-1;rank=1 scaffold_112 . repeat_region 69977 69985 . ? . description=dust scaffold_112 . repeat_region 70076 70088 . ? . description=dust scaffold_112 . repeat_region 72372 72427 . ? . description=dust scaffold_112 . repeat_region 76338 76351 . ? . description=dust scaffold_112 . repeat_region 78740 78748 . ? . description=dust scaffold_112 ensembl protein_coding_gene 73846 75809 . - . ID=Physo142336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120020;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 73846 75809 . - . ID=Physo142336;Parent=Physo142336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . exon 73846 74776 . - . ID=Physo142336.5;Parent=Physo142336;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_112 . CDS 74017 74776 . - 0 ID=Physo142336;Parent=Physo142336;rank=5 scaffold_112 . CDS 74875 74992 . - 0 ID=Physo142336;Parent=Physo142336;rank=4 scaffold_112 . exon 74875 74992 . - . ID=Physo142336.4;Parent=Physo142336;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_112 . CDS 75134 75364 . - 0 ID=Physo142336;Parent=Physo142336;rank=3 scaffold_112 . exon 75134 75364 . - . ID=Physo142336.3;Parent=Physo142336;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_112 . CDS 75618 75639 . - 0 ID=Physo142336;Parent=Physo142336;rank=2 scaffold_112 . exon 75618 75639 . - . ID=Physo142336.2;Parent=Physo142336;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_112 . CDS 75804 75809 . - 0 ID=Physo142336;Parent=Physo142336;rank=1 scaffold_112 . exon 75804 75809 . - . ID=Physo142336.1;Parent=Physo142336;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 76183 77033 . + . ID=Physo142337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120021;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 76183 77033 . + . ID=Physo142337;Parent=Physo142337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 76183 76293 . + 0 ID=Physo142337;Parent=Physo142337;rank=1 scaffold_112 . exon 76183 76293 . + . ID=Physo142337.1;Parent=Physo142337;constitutive=1;rank=1 scaffold_112 . CDS 76399 76671 . + 0 ID=Physo142337;Parent=Physo142337;rank=2 scaffold_112 . exon 76399 76671 . + . ID=Physo142337.2;Parent=Physo142337;constitutive=1;rank=2 scaffold_112 . CDS 76749 77033 . + 0 ID=Physo142337;Parent=Physo142337;rank=3 scaffold_112 . exon 76749 77033 . + . ID=Physo142337.3;Parent=Physo142337;constitutive=1;rank=3 scaffold_112 . biological_region 86445 86446 0.999 - . logic_name=eponine scaffold_112 . biological_region 86931 86932 0.999 + . logic_name=eponine scaffold_112 . biological_region 87095 87098 0.999 - . logic_name=eponine scaffold_112 . biological_region 87646 87647 0.999 + . logic_name=eponine scaffold_112 ensembl protein_coding_gene 85095 86606 . - . ID=Physo109469;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1120005;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 85095 86606 . - . ID=Physo109469;Parent=Physo109469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 85095 86606 . - 0 ID=Physo109469;Parent=Physo109469;rank=1 scaffold_112 . exon 85095 86606 . - . ID=Physo109469.1;Parent=Physo109469;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 82423 82915 . - . ID=Physo142338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120022;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 82423 82915 . - . ID=Physo142338;Parent=Physo142338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 82423 82795 . - 0 ID=Physo142338;Parent=Physo142338;rank=2 scaffold_112 . exon 82423 82795 . - . ID=Physo142338.2;Parent=Physo142338;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 82821 82915 . - 0 ID=Physo142338;Parent=Physo142338;rank=1 scaffold_112 . exon 82821 82915 . - . ID=Physo142338.1;Parent=Physo142338;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 ensembl protein_coding_gene 86812 89170 . - . ID=Physo142340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120024;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 86812 89170 . - . ID=Physo142340;Parent=Physo142340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 86812 86826 . - 0 ID=Physo142340;Parent=Physo142340;rank=3 scaffold_112 . exon 86812 86826 . - . ID=Physo142340.3;Parent=Physo142340;constitutive=1;rank=3 scaffold_112 . CDS 86910 87519 . - 0 ID=Physo142340;Parent=Physo142340;rank=2 scaffold_112 . exon 86910 87519 . - . ID=Physo142340.2;Parent=Physo142340;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 87558 89170 . - 0 ID=Physo142340;Parent=Physo142340;rank=1 scaffold_112 . exon 87558 89170 . - . ID=Physo142340.1;Parent=Physo142340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . repeat_region 89714 89721 . ? . description=dust scaffold_112 . repeat_region 89972 89979 . ? . description=dust scaffold_112 ensembl protein_coding_gene 92044 94882 . + . ID=Physo142341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120025;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 92044 94882 . + . ID=Physo142341;Parent=Physo142341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 92044 92216 . + 0 ID=Physo142341;Parent=Physo142341;rank=1 scaffold_112 . exon 92044 92216 . + . ID=Physo142341.1;Parent=Physo142341;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 92240 93308 . + 0 ID=Physo142341;Parent=Physo142341;rank=2 scaffold_112 . exon 92240 93308 . + . ID=Physo142341.2;Parent=Physo142341;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 93530 93943 . + 0 ID=Physo142341;Parent=Physo142341;rank=3 scaffold_112 . exon 93530 93943 . + . ID=Physo142341.3;Parent=Physo142341;constitutive=1;rank=3 scaffold_112 . CDS 93983 94333 . + 0 ID=Physo142341;Parent=Physo142341;rank=4 scaffold_112 . exon 93983 94333 . + . ID=Physo142341.4;Parent=Physo142341;constitutive=1;rank=4 scaffold_112 . CDS 94439 94882 . + 0 ID=Physo142341;Parent=Physo142341;rank=5 scaffold_112 . exon 94439 94882 . + . ID=Physo142341.5;Parent=Physo142341;constitutive=1;rank=5 scaffold_112 ensembl protein_coding_gene 95045 96876 . - . ID=Physo142342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120026;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 95045 96876 . - . ID=Physo142342;Parent=Physo142342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 95045 95286 . - 0 ID=Physo142342;Parent=Physo142342;rank=6 scaffold_112 . exon 95045 95286 . - . ID=Physo142342.6;Parent=Physo142342;constitutive=1;ensembl_phase=1;rank=6 scaffold_112 . CDS 95367 95594 . - 0 ID=Physo142342;Parent=Physo142342;rank=5 scaffold_112 . exon 95367 95594 . - . ID=Physo142342.5;Parent=Physo142342;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_112 . CDS 95669 95768 . - 0 ID=Physo142342;Parent=Physo142342;rank=4 scaffold_112 . exon 95669 95768 . - . ID=Physo142342.4;Parent=Physo142342;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_112 . CDS 95833 96025 . - 0 ID=Physo142342;Parent=Physo142342;rank=3 scaffold_112 . exon 95833 96025 . - . ID=Physo142342.3;Parent=Physo142342;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 96091 96450 . - 0 ID=Physo142342;Parent=Physo142342;rank=2 scaffold_112 . exon 96091 96450 . - . ID=Physo142342.2;Parent=Physo142342;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_112 . CDS 96554 96876 . - 0 ID=Physo142342;Parent=Physo142342;rank=1 scaffold_112 . exon 96554 96876 . - . ID=Physo142342.1;Parent=Physo142342;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . biological_region 101678 101681 0.999 - . logic_name=eponine scaffold_112 . biological_region 101691 101696 0.999 + . logic_name=eponine scaffold_112 . biological_region 102053 102056 0.999 - . logic_name=eponine scaffold_112 . biological_region 102852 102855 0.999 + . logic_name=eponine scaffold_112 . biological_region 104900 104900 0.999 - . logic_name=eponine scaffold_112 . repeat_region 105663 105695 . ? . description=trf scaffold_112 . biological_region 107259 107263 0.999 - . logic_name=eponine scaffold_112 . biological_region 107773 107776 0.999 + . logic_name=eponine scaffold_112 ensembl protein_coding_gene 100019 100806 . + . ID=Physo142343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120027;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 100019 100806 . + . ID=Physo142343;Parent=Physo142343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 100019 100136 . + 0 ID=Physo142343;Parent=Physo142343;rank=1 scaffold_112 . exon 100019 100136 . + . ID=Physo142343.1;Parent=Physo142343;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 . CDS 100277 100806 . + 0 ID=Physo142343;Parent=Physo142343;rank=2 scaffold_112 . exon 100277 100806 . + . ID=Physo142343.2;Parent=Physo142343;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 ensembl protein_coding_gene 101095 104018 . - . ID=Physo142344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120028;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 101095 104018 . - . ID=Physo142344;Parent=Physo142344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 101095 101337 . - 0 ID=Physo142344;Parent=Physo142344;rank=8 scaffold_112 . exon 101095 101337 . - . ID=Physo142344.8;Parent=Physo142344;constitutive=1;rank=8 scaffold_112 . CDS 101392 101693 . - 0 ID=Physo142344;Parent=Physo142344;rank=7 scaffold_112 . exon 101392 101693 . - . ID=Physo142344.7;Parent=Physo142344;constitutive=1;ensembl_phase=1;rank=7 scaffold_112 . CDS 101744 102227 . - 0 ID=Physo142344;Parent=Physo142344;rank=6 scaffold_112 . exon 101744 102227 . - . ID=Physo142344.6;Parent=Physo142344;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_112 . CDS 102273 102355 . - 0 ID=Physo142344;Parent=Physo142344;rank=5 scaffold_112 . exon 102273 102355 . - . ID=Physo142344.5;Parent=Physo142344;constitutive=1;ensembl_phase=1;rank=5 scaffold_112 . CDS 102509 102685 . - 0 ID=Physo142344;Parent=Physo142344;rank=4 scaffold_112 . exon 102509 102685 . - . ID=Physo142344.4;Parent=Physo142344;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_112 . CDS 102733 102991 . - 0 ID=Physo142344;Parent=Physo142344;rank=3 scaffold_112 . exon 102733 102991 . - . ID=Physo142344.3;Parent=Physo142344;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_112 . CDS 103457 103515 . - 0 ID=Physo142344;Parent=Physo142344;rank=2 scaffold_112 . exon 103457 103515 . - . ID=Physo142344.2;Parent=Physo142344;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 . CDS 103610 104018 . - 0 ID=Physo142344;Parent=Physo142344;rank=1 scaffold_112 . exon 103610 104018 . - . ID=Physo142344.1;Parent=Physo142344;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 ensembl protein_coding_gene 106543 123476 . + . ID=Physo142345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120029;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 106543 123476 . + . ID=Physo142345;Parent=Physo142345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 106543 106680 . + 0 ID=Physo142345;Parent=Physo142345;rank=1 scaffold_112 . exon 106543 106680 . + . ID=Physo142345.1;Parent=Physo142345;constitutive=1;rank=1 scaffold_112 . CDS 106771 108174 . + 0 ID=Physo142345;Parent=Physo142345;rank=2 scaffold_112 . exon 106771 108174 . + . ID=Physo142345.2;Parent=Physo142345;constitutive=1;rank=2 scaffold_112 . CDS 108339 109386 . + 0 ID=Physo142345;Parent=Physo142345;rank=3 scaffold_112 . exon 108339 109386 . + . ID=Physo142345.3;Parent=Physo142345;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_112 . CDS 109408 112068 . + 0 ID=Physo142345;Parent=Physo142345;rank=4 scaffold_112 . exon 109408 112068 . + . ID=Physo142345.4;Parent=Physo142345;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_112 . CDS 112340 112367 . + 0 ID=Physo142345;Parent=Physo142345;rank=5 scaffold_112 . CDS 112449 112587 . + 0 ID=Physo142345;Parent=Physo142345;rank=6 scaffold_112 . CDS 112806 114130 . + 0 ID=Physo142345;Parent=Physo142345;rank=7 scaffold_112 . CDS 114216 119604 . + 0 ID=Physo142345;Parent=Physo142345;rank=8 scaffold_112 . CDS 120072 120084 . + 0 ID=Physo142345;Parent=Physo142345;rank=9 scaffold_112 . CDS 120155 122315 . + 0 ID=Physo142345;Parent=Physo142345;rank=10 scaffold_112 . CDS 122589 123073 . + 0 ID=Physo142345;Parent=Physo142345;rank=11 scaffold_112 . CDS 123248 123407 . + 0 ID=Physo142345;Parent=Physo142345;rank=12 scaffold_112 . CDS 123443 123476 . + 0 ID=Physo142345;Parent=Physo142345;rank=13 scaffold_112 . exon 112340 112367 . + . ID=Physo142345.5;Parent=Physo142345;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_112 . exon 112449 112587 . + . ID=Physo142345.6;Parent=Physo142345;constitutive=1;ensembl_phase=2;rank=6 scaffold_112 . exon 112806 114130 . + . ID=Physo142345.7;Parent=Physo142345;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_112 . exon 114216 119604 . + . ID=Physo142345.8;Parent=Physo142345;constitutive=1;ensembl_phase=2;rank=8 scaffold_112 . biological_region 128987 128993 0.999 + . logic_name=eponine scaffold_112 . biological_region 129148 129150 0.999 - . logic_name=eponine scaffold_112 ensembl protein_coding_gene 106543 123476 . + . ID=Physo142345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120029;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 106543 123476 . + . ID=Physo142345;Parent=Physo142345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 106543 106680 . + 0 ID=Physo142345;Parent=Physo142345;rank=1 scaffold_112 . CDS 106771 108174 . + 0 ID=Physo142345;Parent=Physo142345;rank=2 scaffold_112 . CDS 108339 109386 . + 0 ID=Physo142345;Parent=Physo142345;rank=3 scaffold_112 . CDS 109408 112068 . + 0 ID=Physo142345;Parent=Physo142345;rank=4 scaffold_112 . CDS 112340 112367 . + 0 ID=Physo142345;Parent=Physo142345;rank=5 scaffold_112 . CDS 112449 112587 . + 0 ID=Physo142345;Parent=Physo142345;rank=6 scaffold_112 . CDS 112806 114130 . + 0 ID=Physo142345;Parent=Physo142345;rank=7 scaffold_112 . CDS 114216 119604 . + 0 ID=Physo142345;Parent=Physo142345;rank=8 scaffold_112 . CDS 120072 120084 . + 0 ID=Physo142345;Parent=Physo142345;rank=9 scaffold_112 . exon 120072 120084 . + . ID=Physo142345.9;Parent=Physo142345;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_112 . CDS 120155 122315 . + 0 ID=Physo142345;Parent=Physo142345;rank=10 scaffold_112 . exon 120155 122315 . + . ID=Physo142345.10;Parent=Physo142345;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_112 . CDS 122589 123073 . + 0 ID=Physo142345;Parent=Physo142345;rank=11 scaffold_112 . exon 122589 123073 . + . ID=Physo142345.11;Parent=Physo142345;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_112 . CDS 123248 123407 . + 0 ID=Physo142345;Parent=Physo142345;rank=12 scaffold_112 . exon 123248 123407 . + . ID=Physo142345.12;Parent=Physo142345;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_112 . CDS 123443 123476 . + 0 ID=Physo142345;Parent=Physo142345;rank=13 scaffold_112 . exon 123443 123476 . + . ID=Physo142345.13;Parent=Physo142345;constitutive=1;ensembl_phase=2;rank=13 scaffold_112 ensembl protein_coding_gene 124733 129411 . - . ID=Physo142346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120030;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 124733 129411 . - . ID=Physo142346;Parent=Physo142346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . exon 124733 129217 . - . ID=Physo142346.2;Parent=Physo142346;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_112 . CDS 124829 129217 . - 0 ID=Physo142346;Parent=Physo142346;rank=2 scaffold_112 . CDS 129280 129411 . - 0 ID=Physo142346;Parent=Physo142346;rank=1 scaffold_112 . exon 129280 129411 . - . ID=Physo142346.1;Parent=Physo142346;constitutive=1;rank=1 scaffold_112 . repeat_region 137572 137886 . + . description=GypsyPi-1c_LTR scaffold_112 . repeat_region 137887 139581 . + . description=GypsyPi-1c_I-int scaffold_112 ensembl protein_coding_gene 130298 133922 . + . ID=Physo142347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120031;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 130298 133922 . + . ID=Physo142347;Parent=Physo142347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 130298 132966 . + 0 ID=Physo142347;Parent=Physo142347;rank=1 scaffold_112 . exon 130298 132966 . + . ID=Physo142347.1;Parent=Physo142347;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 . CDS 133094 133922 . + 0 ID=Physo142347;Parent=Physo142347;rank=2 scaffold_112 . exon 133094 133922 . + . ID=Physo142347.2;Parent=Physo142347;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 ensembl protein_coding_gene 134142 135855 . - . ID=Physo142348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120032;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 134142 135855 . - . ID=Physo142348;Parent=Physo142348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 134142 135019 . - 0 ID=Physo142348;Parent=Physo142348;rank=5 scaffold_112 . exon 134142 135019 . - . ID=Physo142348.5;Parent=Physo142348;constitutive=1;ensembl_phase=1;rank=5 scaffold_112 . CDS 135105 135168 . - 0 ID=Physo142348;Parent=Physo142348;rank=4 scaffold_112 . exon 135105 135168 . - . ID=Physo142348.4;Parent=Physo142348;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_112 . CDS 135257 135344 . - 0 ID=Physo142348;Parent=Physo142348;rank=3 scaffold_112 . exon 135257 135344 . - . ID=Physo142348.3;Parent=Physo142348;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 135435 135543 . - 0 ID=Physo142348;Parent=Physo142348;rank=2 scaffold_112 . exon 135435 135543 . - . ID=Physo142348.2;Parent=Physo142348;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_112 . CDS 135636 135855 . - 0 ID=Physo142348;Parent=Physo142348;rank=1 scaffold_112 . exon 135636 135855 . - . ID=Physo142348.1;Parent=Physo142348;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 ensembl protein_coding_gene 137974 138939 . + . ID=Physo142349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120033;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 137974 138939 . + . ID=Physo142349;Parent=Physo142349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 137974 138939 . + 0 ID=Physo142349;Parent=Physo142349;rank=1 scaffold_112 . exon 137974 138939 . + . ID=Physo142349.1;Parent=Physo142349;constitutive=1;rank=1 scaffold_112 . repeat_region 139299 139348 . ? . description=trf scaffold_112 . repeat_region 139305 139355 . ? . description=trf scaffold_112 . repeat_region 139838 140074 . ? . description=trf scaffold_112 . biological_region 140323 140325 0.999 + . logic_name=eponine scaffold_112 . repeat_region 141601 141650 . ? . description=trf scaffold_112 . repeat_region 143828 143895 . + . description=Polinton-1_PI scaffold_112 . repeat_region 145058 145467 . + . description=Polinton-1_PI scaffold_112 . repeat_region 145907 146110 . - . description=Polinton-1_PI scaffold_112 . repeat_region 146552 146599 . ? . description=trf scaffold_112 . repeat_region 147571 147646 . ? . description=trf scaffold_112 . repeat_region 148364 148373 . ? . description=dust scaffold_112 ensembl protein_coding_gene 149624 150730 . - . ID=Physo142350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120034;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 149624 150730 . - . ID=Physo142350;Parent=Physo142350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 149624 150730 . - 0 ID=Physo142350;Parent=Physo142350;rank=1 scaffold_112 . exon 149624 150730 . - . ID=Physo142350.1;Parent=Physo142350;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 155170 158180 . - . ID=Physo142351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120035;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 155170 158180 . - . ID=Physo142351;Parent=Physo142351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 155170 155640 . - 0 ID=Physo142351;Parent=Physo142351;rank=6 scaffold_112 . exon 155170 155640 . - . ID=Physo142351.6;Parent=Physo142351;constitutive=1;rank=6 scaffold_112 . CDS 155794 155914 . - 0 ID=Physo142351;Parent=Physo142351;rank=5 scaffold_112 . exon 155794 155914 . - . ID=Physo142351.5;Parent=Physo142351;constitutive=1;ensembl_phase=2;rank=5 scaffold_112 . CDS 155935 156023 . - 0 ID=Physo142351;Parent=Physo142351;rank=4 scaffold_112 . exon 155935 156023 . - . ID=Physo142351.4;Parent=Physo142351;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_112 . CDS 156099 156474 . - 0 ID=Physo142351;Parent=Physo142351;rank=3 scaffold_112 . exon 156099 156474 . - . ID=Physo142351.3;Parent=Physo142351;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 156590 157326 . - 0 ID=Physo142351;Parent=Physo142351;rank=2 scaffold_112 . exon 156590 157326 . - . ID=Physo142351.2;Parent=Physo142351;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_112 . CDS 157431 158180 . - 0 ID=Physo142351;Parent=Physo142351;rank=1 scaffold_112 . exon 157431 158180 . - . ID=Physo142351.1;Parent=Physo142351;constitutive=1;rank=1 scaffold_112 . biological_region 160423 160423 0.999 + . logic_name=eponine scaffold_112 . repeat_region 160606 160639 . ? . description=trf scaffold_112 . biological_region 160828 160835 0.999 - . logic_name=eponine scaffold_112 . biological_region 161629 161633 0.999 - . logic_name=eponine scaffold_112 . biological_region 162897 162900 0.999 - . logic_name=eponine scaffold_112 . biological_region 166748 166753 0.999 - . logic_name=eponine scaffold_112 ensembl protein_coding_gene 160152 161338 . - . ID=Physo142352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120036;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 160152 161338 . - . ID=Physo142352;Parent=Physo142352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 160152 160604 . - 0 ID=Physo142352;Parent=Physo142352;rank=3 scaffold_112 . exon 160152 160604 . - . ID=Physo142352.3;Parent=Physo142352;constitutive=1;rank=3 scaffold_112 . CDS 160639 161087 . - 0 ID=Physo142352;Parent=Physo142352;rank=2 scaffold_112 . exon 160639 161087 . - . ID=Physo142352.2;Parent=Physo142352;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 . CDS 161107 161338 . - 0 ID=Physo142352;Parent=Physo142352;rank=1 scaffold_112 . exon 161107 161338 . - . ID=Physo142352.1;Parent=Physo142352;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 ensembl protein_coding_gene 165376 168633 . - . ID=Physo142353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120037;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 165376 168633 . - . ID=Physo142353;Parent=Physo142353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 165376 165534 . - 0 ID=Physo142353;Parent=Physo142353;rank=5 scaffold_112 . exon 165376 165534 . - . ID=Physo142353.5;Parent=Physo142353;constitutive=1;rank=5 scaffold_112 . CDS 165579 166747 . - 0 ID=Physo142353;Parent=Physo142353;rank=4 scaffold_112 . exon 165579 166747 . - . ID=Physo142353.4;Parent=Physo142353;constitutive=1;ensembl_phase=1;rank=4 scaffold_112 . CDS 167143 167731 . - 0 ID=Physo142353;Parent=Physo142353;rank=3 scaffold_112 . exon 167143 167731 . - . ID=Physo142353.3;Parent=Physo142353;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_112 . CDS 167783 168478 . - 0 ID=Physo142353;Parent=Physo142353;rank=2 scaffold_112 . exon 167783 168478 . - . ID=Physo142353.2;Parent=Physo142353;constitutive=1;rank=2 scaffold_112 . CDS 168565 168633 . - 0 ID=Physo142353;Parent=Physo142353;rank=1 scaffold_112 . exon 168565 168633 . - . ID=Physo142353.1;Parent=Physo142353;constitutive=1;rank=1 scaffold_112 . repeat_region 177245 177556 . + . description=Polinton-1_PI scaffold_112 . repeat_region 177691 178190 . - . description=Polinton-1_PI scaffold_112 . repeat_region 178585 178692 . - . description=Polinton-1_PI scaffold_112 ensembl protein_coding_gene 171066 173517 . - . ID=Physo142354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120038;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 171066 173517 . - . ID=Physo142354;Parent=Physo142354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 171066 171130 . - 0 ID=Physo142354;Parent=Physo142354;rank=3 scaffold_112 . exon 171066 171130 . - . ID=Physo142354.3;Parent=Physo142354;constitutive=1;ensembl_phase=1;rank=3 scaffold_112 . CDS 171295 172150 . - 0 ID=Physo142354;Parent=Physo142354;rank=2 scaffold_112 . exon 171295 172150 . - . ID=Physo142354.2;Parent=Physo142354;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_112 . CDS 172267 173517 . - 0 ID=Physo142354;Parent=Physo142354;rank=1 scaffold_112 . exon 172267 173517 . - . ID=Physo142354.1;Parent=Physo142354;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 175058 176985 . - . ID=Physo142355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120039;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 175058 176985 . - . ID=Physo142355;Parent=Physo142355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 175058 176089 . - 0 ID=Physo142355;Parent=Physo142355;rank=3 scaffold_112 . exon 175058 176089 . - . ID=Physo142355.3;Parent=Physo142355;constitutive=1;rank=3 scaffold_112 . CDS 176522 176712 . - 0 ID=Physo142355;Parent=Physo142355;rank=2 scaffold_112 . exon 176522 176712 . - . ID=Physo142355.2;Parent=Physo142355;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 . CDS 176982 176985 . - 0 ID=Physo142355;Parent=Physo142355;rank=1 scaffold_112 . exon 176982 176985 . - . ID=Physo142355.1;Parent=Physo142355;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 ensembl protein_coding_gene 177675 178031 . - . ID=Physo142356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120040;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 177675 178031 . - . ID=Physo142356;Parent=Physo142356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 177675 178031 . - 0 ID=Physo142356;Parent=Physo142356;rank=1 scaffold_112 . exon 177675 178031 . - . ID=Physo142356.1;Parent=Physo142356;constitutive=1;rank=1 scaffold_112 . repeat_region 179897 179904 . ? . description=dust scaffold_112 . biological_region 196511 196513 0.999 + . logic_name=eponine scaffold_112 . biological_region 198342 198344 0.999 - . logic_name=eponine scaffold_112 . repeat_region 201715 202416 . - . description=Polinton-1_PI scaffold_112 . repeat_region 203994 204038 . ? . description=trf scaffold_112 . repeat_region 205028 208894 . - . description=Polinton-1_PI scaffold_112 . repeat_region 207872 207882 . ? . description=dust scaffold_112 . biological_region 215218 215218 0.999 - . logic_name=eponine scaffold_112 . biological_region 217022 217025 0.999 - . logic_name=eponine scaffold_112 . biological_region 217969 217971 0.999 + . logic_name=eponine scaffold_112 . biological_region 218218 218220 0.999 - . logic_name=eponine scaffold_112 ensembl protein_coding_gene 211665 213811 . - . ID=Physo142357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120041;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 211665 213811 . - . ID=Physo142357;Parent=Physo142357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 211665 211675 . - 0 ID=Physo142357;Parent=Physo142357;rank=2 scaffold_112 . exon 211665 211675 . - . ID=Physo142357.2;Parent=Physo142357;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 . CDS 211738 213811 . - 0 ID=Physo142357;Parent=Physo142357;rank=1 scaffold_112 . exon 211738 213811 . - . ID=Physo142357.1;Parent=Physo142357;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 ensembl protein_coding_gene 214865 216762 . - . ID=Physo142358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120042;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 214865 216762 . - . ID=Physo142358;Parent=Physo142358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 214865 215146 . - 0 ID=Physo142358;Parent=Physo142358;rank=8 scaffold_112 . exon 214865 215146 . - . ID=Physo142358.8;Parent=Physo142358;constitutive=1;rank=8 scaffold_112 . CDS 215249 215342 . - 0 ID=Physo142358;Parent=Physo142358;rank=7 scaffold_112 . exon 215249 215342 . - . ID=Physo142358.7;Parent=Physo142358;constitutive=1;ensembl_phase=2;rank=7 scaffold_112 . CDS 215484 215626 . - 0 ID=Physo142358;Parent=Physo142358;rank=6 scaffold_112 . exon 215484 215626 . - . ID=Physo142358.6;Parent=Physo142358;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_112 . CDS 215700 215811 . - 0 ID=Physo142358;Parent=Physo142358;rank=5 scaffold_112 . exon 215700 215811 . - . ID=Physo142358.5;Parent=Physo142358;constitutive=1;ensembl_phase=2;rank=5 scaffold_112 . CDS 215878 216045 . - 0 ID=Physo142358;Parent=Physo142358;rank=4 scaffold_112 . exon 215878 216045 . - . ID=Physo142358.4;Parent=Physo142358;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_112 . CDS 216115 216280 . - 0 ID=Physo142358;Parent=Physo142358;rank=3 scaffold_112 . exon 216115 216280 . - . ID=Physo142358.3;Parent=Physo142358;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_112 . CDS 216474 216579 . - 0 ID=Physo142358;Parent=Physo142358;rank=2 scaffold_112 . exon 216474 216579 . - . ID=Physo142358.2;Parent=Physo142358;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_112 . CDS 216658 216762 . - 0 ID=Physo142358;Parent=Physo142358;rank=1 scaffold_112 . exon 216658 216762 . - . ID=Physo142358.1;Parent=Physo142358;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 217176 219291 . + . ID=Physo142359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120043;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 217176 219291 . + . ID=Physo142359;Parent=Physo142359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 217176 219003 . + 0 ID=Physo142359;Parent=Physo142359;rank=1 scaffold_112 . exon 217176 219003 . + . ID=Physo142359.1;Parent=Physo142359;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_112 . CDS 219100 219197 . + 0 ID=Physo142359;Parent=Physo142359;rank=2 scaffold_112 . CDS 219262 219291 . + 0 ID=Physo142359;Parent=Physo142359;rank=3 scaffold_112 . repeat_region 222680 222704 . ? . description=dust scaffold_112 . repeat_region 222680 222704 . ? . description=trf scaffold_112 . repeat_region 223106 223119 . ? . description=dust scaffold_112 . repeat_region 226552 226699 . ? . description=trf scaffold_112 . exon 219100 219197 . + . ID=Physo142359.2;Parent=Physo142359;constitutive=1;ensembl_phase=1;rank=2 scaffold_112 . exon 219262 219291 . + . ID=Physo142359.3;Parent=Physo142359;constitutive=1;rank=3 scaffold_112 ensembl protein_coding_gene 220963 222887 . - . ID=Physo142360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120044;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 220963 222887 . - . ID=Physo142360;Parent=Physo142360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 220963 221119 . - 0 ID=Physo142360;Parent=Physo142360;rank=5 scaffold_112 . exon 220963 221119 . - . ID=Physo142360.5;Parent=Physo142360;constitutive=1;ensembl_phase=2;rank=5 scaffold_112 . CDS 221256 221356 . - 0 ID=Physo142360;Parent=Physo142360;rank=4 scaffold_112 . exon 221256 221356 . - . ID=Physo142360.4;Parent=Physo142360;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_112 . CDS 221434 222051 . - 0 ID=Physo142360;Parent=Physo142360;rank=3 scaffold_112 . exon 221434 222051 . - . ID=Physo142360.3;Parent=Physo142360;constitutive=1;rank=3 scaffold_112 . CDS 222095 222665 . - 0 ID=Physo142360;Parent=Physo142360;rank=2 scaffold_112 . exon 222095 222665 . - . ID=Physo142360.2;Parent=Physo142360;constitutive=1;ensembl_phase=2;rank=2 scaffold_112 . CDS 222793 222887 . - 0 ID=Physo142360;Parent=Physo142360;rank=1 scaffold_112 . exon 222793 222887 . - . ID=Physo142360.1;Parent=Physo142360;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_112 ensembl protein_coding_gene 223281 223730 . - . ID=Physo142361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120045;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 223281 223730 . - . ID=Physo142361;Parent=Physo142361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 223281 223730 . - 0 ID=Physo142361;Parent=Physo142361;rank=1 scaffold_112 . exon 223281 223730 . - . ID=Physo142361.1;Parent=Physo142361;constitutive=1;rank=1 scaffold_112 . biological_region 233678 233680 0.999 + . logic_name=eponine scaffold_112 ensembl protein_coding_gene 237531 238412 . + . ID=Physo109470;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1120006;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 237531 238412 . + . ID=Physo109470;Parent=Physo109470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 237531 238412 . + 0 ID=Physo109470;Parent=Physo109470;rank=1 scaffold_112 . exon 237531 238412 . + . ID=Physo109470.1;Parent=Physo109470;constitutive=1;rank=1 scaffold_112 ensembl protein_coding_gene 233118 235434 . - . ID=Physo142362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1120046;logic_name=jgi_physo1_1 scaffold_112 ensembl transcript 233118 235434 . - . ID=Physo142362;Parent=Physo142362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_112 . CDS 233118 233709 . - 0 ID=Physo142362;Parent=Physo142362;rank=3 scaffold_112 . exon 233118 233709 . - . ID=Physo142362.3;Parent=Physo142362;constitutive=1;ensembl_phase=2;rank=3 scaffold_112 . CDS 233915 234432 . - 0 ID=Physo142362;Parent=Physo142362;rank=2 scaffold_112 . exon 233915 234432 . - . ID=Physo142362.2;Parent=Physo142362;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_112 . CDS 234478 235434 . - 0 ID=Physo142362;Parent=Physo142362;rank=1 scaffold_112 . exon 234478 235434 . - . ID=Physo142362.1;Parent=Physo142362;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_109 1 240082 scaffold_109 . repeat_region 194 248 . ? . description=trf scaffold_109 . biological_region 253 255 0.999 + . logic_name=eponine scaffold_109 . biological_region 281 282 0.999 + . logic_name=eponine scaffold_109 . biological_region 301 302 0.999 + . logic_name=eponine scaffold_109 . biological_region 330 332 0.999 + . logic_name=eponine scaffold_109 . biological_region 334 340 0.999 - . logic_name=eponine scaffold_109 . repeat_region 391 437 . ? . description=trf scaffold_109 . biological_region 419 424 0.999 + . logic_name=eponine scaffold_109 . biological_region 437 442 0.999 - . logic_name=eponine scaffold_109 . repeat_region 515 2239 . + . description=GypsyPi-1c_I-int scaffold_109 . repeat_region 2610 2777 . + . description=GypsyPi-1c_I-int scaffold_109 . repeat_region 2900 3298 . ? . description=dust scaffold_109 . repeat_region 3540 3563 . ? . description=trf scaffold_109 . repeat_region 3777 3837 . ? . description=dust scaffold_109 . repeat_region 3778 3815 . ? . description=trf scaffold_109 . repeat_region 4741 18763 . ? . description=dust scaffold_109 ensembl protein_coding_gene 680 2711 . + . ID=Physo142145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090001;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 680 2711 . + . ID=Physo142145;Parent=Physo142145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 680 1536 . + 0 ID=Physo142145;Parent=Physo142145;rank=1 scaffold_109 . exon 680 1536 . + . ID=Physo142145.1;Parent=Physo142145;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 1583 1728 . + 0 ID=Physo142145;Parent=Physo142145;rank=2 scaffold_109 . exon 1583 1728 . + . ID=Physo142145.2;Parent=Physo142145;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 1980 2161 . + 0 ID=Physo142145;Parent=Physo142145;rank=3 scaffold_109 . exon 1980 2161 . + . ID=Physo142145.3;Parent=Physo142145;constitutive=1;ensembl_phase=1;rank=3 scaffold_109 . CDS 2364 2711 . + 0 ID=Physo142145;Parent=Physo142145;rank=4 scaffold_109 . exon 2364 2711 . + . ID=Physo142145.4;Parent=Physo142145;constitutive=1;rank=4 scaffold_109 . repeat_region 20502 20522 . ? . description=trf scaffold_109 . repeat_region 21145 21896 . ? . description=dust scaffold_109 . repeat_region 22701 25641 . ? . description=dust scaffold_109 . repeat_region 27430 28362 . ? . description=dust scaffold_109 ensembl protein_coding_gene 26037 28512 . + . ID=Physo142146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090002;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 26037 28512 . + . ID=Physo142146;Parent=Physo142146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 26037 26202 . + 0 ID=Physo142146;Parent=Physo142146;rank=1 scaffold_109 . exon 26037 26202 . + . ID=Physo142146.1;Parent=Physo142146;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . CDS 26277 27423 . + 0 ID=Physo142146;Parent=Physo142146;rank=2 scaffold_109 . exon 26277 27423 . + . ID=Physo142146.2;Parent=Physo142146;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_109 . CDS 28494 28512 . + 0 ID=Physo142146;Parent=Physo142146;rank=3 scaffold_109 . exon 28494 28512 . + . ID=Physo142146.3;Parent=Physo142146;constitutive=1;ensembl_phase=2;rank=3 scaffold_109 ensembl protein_coding_gene 31108 31962 . + . ID=Physo142147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090003;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 31108 31962 . + . ID=Physo142147;Parent=Physo142147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 31108 31962 . + 0 ID=Physo142147;Parent=Physo142147;rank=1 scaffold_109 . exon 31108 31962 . + . ID=Physo142147.1;Parent=Physo142147;constitutive=1;rank=1 scaffold_109 . biological_region 40135 40137 0.999 + . logic_name=eponine scaffold_109 . repeat_region 41159 41278 . ? . description=dust scaffold_109 . repeat_region 41295 41343 . ? . description=trf scaffold_109 . biological_region 41545 41548 0.999 + . logic_name=eponine scaffold_109 . biological_region 41588 41592 0.999 + . logic_name=eponine scaffold_109 . biological_region 41657 41658 0.999 - . logic_name=eponine scaffold_109 . biological_region 41802 41805 0.999 - . logic_name=eponine scaffold_109 . biological_region 45335 45339 0.999 + . logic_name=eponine scaffold_109 . biological_region 45419 45420 0.999 - . logic_name=eponine scaffold_109 . biological_region 45446 45447 0.999 - . logic_name=eponine scaffold_109 . biological_region 45713 45720 0.999 + . logic_name=eponine scaffold_109 . biological_region 45719 45719 0.999 - . logic_name=eponine scaffold_109 . biological_region 46006 46009 0.999 + . logic_name=eponine scaffold_109 . biological_region 46066 46069 0.999 + . logic_name=eponine scaffold_109 . biological_region 46287 46291 0.999 - . logic_name=eponine scaffold_109 ensembl protein_coding_gene 44682 46267 . - . ID=Physo142149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090005;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 44682 46267 . - . ID=Physo142149;Parent=Physo142149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . exon 44682 46267 . - . ID=Physo142149.1;Parent=Physo142149;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_109 . CDS 44936 46267 . - 0 ID=Physo142149;Parent=Physo142149;rank=1 scaffold_109 ensembl protein_coding_gene 41577 44616 . + . ID=Physo158475;biotype=protein_coding;external_name=C_scaffold_109000001;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 41577 44616 . + . ID=Physo158475;Parent=Physo158475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 41577 41631 . + 0 ID=Physo158475;Parent=Physo158475;rank=1 scaffold_109 . exon 41577 41631 . + . ID=Physo158475.1;Parent=Physo158475;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . CDS 41719 42599 . + 0 ID=Physo158475;Parent=Physo158475;rank=2 scaffold_109 . exon 41719 42599 . + . ID=Physo158475.2;Parent=Physo158475;constitutive=1;ensembl_phase=1;rank=2 scaffold_109 . CDS 42673 42921 . + 0 ID=Physo158475;Parent=Physo158475;rank=3 scaffold_109 . exon 42673 42921 . + . ID=Physo158475.3;Parent=Physo158475;constitutive=1;rank=3 scaffold_109 . CDS 43003 43033 . + 0 ID=Physo158475;Parent=Physo158475;rank=4 scaffold_109 . exon 43003 43033 . + . ID=Physo158475.4;Parent=Physo158475;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_109 . CDS 43240 43489 . + 0 ID=Physo158475;Parent=Physo158475;rank=5 scaffold_109 . exon 43240 43489 . + . ID=Physo158475.5;Parent=Physo158475;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_109 . CDS 43515 43541 . + 0 ID=Physo158475;Parent=Physo158475;rank=6 scaffold_109 . exon 43515 43541 . + . ID=Physo158475.6;Parent=Physo158475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_109 . CDS 43591 43687 . + 0 ID=Physo158475;Parent=Physo158475;rank=7 scaffold_109 . exon 43591 43687 . + . ID=Physo158475.7;Parent=Physo158475;constitutive=1;ensembl_phase=2;rank=7 scaffold_109 . CDS 43757 43847 . + 0 ID=Physo158475;Parent=Physo158475;rank=8 scaffold_109 . exon 43757 43847 . + . ID=Physo158475.8;Parent=Physo158475;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_109 . CDS 44366 44521 . + 0 ID=Physo158475;Parent=Physo158475;rank=9 scaffold_109 . exon 44366 44521 . + . ID=Physo158475.9;Parent=Physo158475;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_109 . CDS 44591 44616 . + 0 ID=Physo158475;Parent=Physo158475;rank=10 scaffold_109 . exon 44591 44616 . + . ID=Physo158475.10;Parent=Physo158475;constitutive=1;ensembl_phase=1;rank=10 scaffold_109 ensembl protein_coding_gene 49771 51101 . + . ID=Physo142150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090006;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 49771 51101 . + . ID=Physo142150;Parent=Physo142150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 49771 51044 . + 0 ID=Physo142150;Parent=Physo142150;rank=1 scaffold_109 . exon 49771 51044 . + . ID=Physo142150.1;Parent=Physo142150;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 51095 51101 . + 0 ID=Physo142150;Parent=Physo142150;rank=2 scaffold_109 . exon 51095 51101 . + . ID=Physo142150.2;Parent=Physo142150;constitutive=1;ensembl_phase=2;rank=2 scaffold_109 ensembl protein_coding_gene 57311 60049 . + . ID=Physo158476;biotype=protein_coding;external_name=C_scaffold_109000002;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 57311 60049 . + . ID=Physo158476;Parent=Physo158476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 57311 57426 . + 0 ID=Physo158476;Parent=Physo158476;rank=1 scaffold_109 . exon 57311 57426 . + . ID=Physo158476.1;Parent=Physo158476;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 57526 57905 . + 0 ID=Physo158476;Parent=Physo158476;rank=2 scaffold_109 . exon 57526 57905 . + . ID=Physo158476.2;Parent=Physo158476;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 58002 58073 . + 0 ID=Physo158476;Parent=Physo158476;rank=3 scaffold_109 . CDS 58131 58340 . + 0 ID=Physo158476;Parent=Physo158476;rank=4 scaffold_109 . CDS 58500 58726 . + 0 ID=Physo158476;Parent=Physo158476;rank=5 scaffold_109 . CDS 58865 59066 . + 0 ID=Physo158476;Parent=Physo158476;rank=6 scaffold_109 . CDS 59301 59725 . + 0 ID=Physo158476;Parent=Physo158476;rank=7 scaffold_109 . CDS 59792 60049 . + 0 ID=Physo158476;Parent=Physo158476;rank=8 scaffold_109 . biological_region 63179 63182 0.999 + . logic_name=eponine scaffold_109 . biological_region 63231 63232 0.999 + . logic_name=eponine scaffold_109 . biological_region 63335 63339 0.999 - . logic_name=eponine scaffold_109 . biological_region 63485 63487 0.999 - . logic_name=eponine scaffold_109 . biological_region 63490 63497 0.999 + . logic_name=eponine scaffold_109 ensembl protein_coding_gene 63977 65529 . - . ID=Physo122583;biotype=protein_coding;external_name=estExt_Genewise1.C_1090002;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 63977 65529 . - . ID=Physo122583;Parent=Physo122583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . exon 63977 65285 . - . ID=Physo122583.2;Parent=Physo122583;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_109 . CDS 64083 65285 . - 0 ID=Physo122583;Parent=Physo122583;rank=2 scaffold_109 . CDS 65362 65496 . - 0 ID=Physo122583;Parent=Physo122583;rank=1 scaffold_109 . exon 65362 65529 . - . ID=Physo122583.1;Parent=Physo122583;constitutive=1;ensembl_phase=-1;rank=1 scaffold_109 ensembl protein_coding_gene 63029 63727 . - . ID=Physo142153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090009;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 63029 63727 . - . ID=Physo142153;Parent=Physo142153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . exon 63029 63462 . - . ID=Physo142153.2;Parent=Physo142153;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_109 . CDS 63060 63462 . - 0 ID=Physo142153;Parent=Physo142153;rank=2 scaffold_109 . CDS 63530 63726 . - 0 ID=Physo142153;Parent=Physo142153;rank=1 scaffold_109 . exon 63530 63727 . - . ID=Physo142153.1;Parent=Physo142153;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_109 . exon 58002 58073 . + . ID=Physo158476.3;Parent=Physo158476;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_109 . exon 58131 58340 . + . ID=Physo158476.4;Parent=Physo158476;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_109 . exon 58500 58726 . + . ID=Physo158476.5;Parent=Physo158476;constitutive=1;ensembl_phase=1;rank=5 scaffold_109 . exon 58865 59066 . + . ID=Physo158476.6;Parent=Physo158476;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_109 . exon 59301 59725 . + . ID=Physo158476.7;Parent=Physo158476;constitutive=1;ensembl_phase=1;rank=7 scaffold_109 . exon 59792 60049 . + . ID=Physo158476.8;Parent=Physo158476;constitutive=1;rank=8 scaffold_109 ensembl protein_coding_gene 61507 62962 . + . ID=Physo158479;biotype=protein_coding;external_name=C_scaffold_109000005;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 61507 62962 . + . ID=Physo158479;Parent=Physo158479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 61507 62296 . + 0 ID=Physo158479;Parent=Physo158479;rank=1 scaffold_109 . exon 61507 62296 . + . ID=Physo158479.1;Parent=Physo158479;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . CDS 62351 62805 . + 0 ID=Physo158479;Parent=Physo158479;rank=2 scaffold_109 . exon 62351 62805 . + . ID=Physo158479.2;Parent=Physo158479;constitutive=1;ensembl_phase=1;rank=2 scaffold_109 . CDS 62876 62962 . + 0 ID=Physo158479;Parent=Physo158479;rank=3 scaffold_109 . exon 62876 62962 . + . ID=Physo158479.3;Parent=Physo158479;constitutive=1;rank=3 scaffold_109 . repeat_region 76434 76441 . ? . description=dust scaffold_109 ensembl protein_coding_gene 70409 71870 . - . ID=Physo109449;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1090001;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 70409 71870 . - . ID=Physo109449;Parent=Physo109449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 70409 70448 . - 0 ID=Physo109449;Parent=Physo109449;rank=5 scaffold_109 . exon 70409 70448 . - . ID=Physo109449.5;Parent=Physo109449;constitutive=1;ensembl_phase=2;rank=5 scaffold_109 . CDS 70494 71347 . - 0 ID=Physo109449;Parent=Physo109449;rank=4 scaffold_109 . exon 70494 71347 . - . ID=Physo109449.4;Parent=Physo109449;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_109 . CDS 71425 71505 . - 0 ID=Physo109449;Parent=Physo109449;rank=3 scaffold_109 . exon 71425 71505 . - . ID=Physo109449.3;Parent=Physo109449;constitutive=1;rank=3 scaffold_109 . CDS 71576 71641 . - 0 ID=Physo109449;Parent=Physo109449;rank=2 scaffold_109 . exon 71576 71641 . - . ID=Physo109449.2;Parent=Physo109449;constitutive=1;rank=2 scaffold_109 . CDS 71730 71870 . - 0 ID=Physo109449;Parent=Physo109449;rank=1 scaffold_109 . exon 71730 71870 . - . ID=Physo109449.1;Parent=Physo109449;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 69154 70348 . + . ID=Physo142155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090011;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 69154 70348 . + . ID=Physo142155;Parent=Physo142155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 69154 69617 . + 0 ID=Physo142155;Parent=Physo142155;rank=1 scaffold_109 . exon 69154 69617 . + . ID=Physo142155.1;Parent=Physo142155;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 69842 70091 . + 0 ID=Physo142155;Parent=Physo142155;rank=2 scaffold_109 . exon 69842 70091 . + . ID=Physo142155.2;Parent=Physo142155;constitutive=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 70186 70320 . + 0 ID=Physo142155;Parent=Physo142155;rank=3 scaffold_109 . exon 70186 70348 . + . ID=Physo142155.3;Parent=Physo142155;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_109 ensembl protein_coding_gene 73927 75852 . - . ID=Physo142157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090013;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 73927 75852 . - . ID=Physo142157;Parent=Physo142157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 73927 73988 . - 0 ID=Physo142157;Parent=Physo142157;rank=3 scaffold_109 . exon 73927 73988 . - . ID=Physo142157.3;Parent=Physo142157;constitutive=1;ensembl_phase=1;rank=3 scaffold_109 . CDS 74096 75602 . - 0 ID=Physo142157;Parent=Physo142157;rank=2 scaffold_109 . exon 74096 75602 . - . ID=Physo142157.2;Parent=Physo142157;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_109 . CDS 75721 75852 . - 0 ID=Physo142157;Parent=Physo142157;rank=1 scaffold_109 . exon 75721 75852 . - . ID=Physo142157.1;Parent=Physo142157;constitutive=1;rank=1 scaffold_109 . repeat_region 82900 83118 . ? . description=trf scaffold_109 . repeat_region 85919 85975 . ? . description=trf scaffold_109 . repeat_region 86014 86128 . ? . description=trf scaffold_109 . repeat_region 86062 86142 . ? . description=trf scaffold_109 . repeat_region 86081 86193 . ? . description=trf scaffold_109 . repeat_region 86117 86215 . ? . description=trf scaffold_109 . biological_region 86404 86407 0.999 - . logic_name=eponine scaffold_109 ensembl protein_coding_gene 79616 80593 . + . ID=Physo142158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090014;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 79616 80593 . + . ID=Physo142158;Parent=Physo142158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 79616 80593 . + 0 ID=Physo142158;Parent=Physo142158;rank=1 scaffold_109 . exon 79616 80593 . + . ID=Physo142158.1;Parent=Physo142158;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 83519 84745 . + . ID=Physo142159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090015;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 83519 84745 . + . ID=Physo142159;Parent=Physo142159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 83519 84745 . + 0 ID=Physo142159;Parent=Physo142159;rank=1 scaffold_109 . exon 83519 84745 . + . ID=Physo142159.1;Parent=Physo142159;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 85715 86702 . + . ID=Physo142160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090016;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 85715 86702 . + . ID=Physo142160;Parent=Physo142160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 85715 85755 . + 0 ID=Physo142160;Parent=Physo142160;rank=1 scaffold_109 . exon 85715 85755 . + . ID=Physo142160.1;Parent=Physo142160;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 85906 86471 . + 0 ID=Physo142160;Parent=Physo142160;rank=2 scaffold_109 . exon 85906 86471 . + . ID=Physo142160.2;Parent=Physo142160;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 86566 86702 . + 0 ID=Physo142160;Parent=Physo142160;rank=3 scaffold_109 . repeat_region 87214 87225 . ? . description=dust scaffold_109 . repeat_region 90225 90241 . ? . description=dust scaffold_109 . repeat_region 94489 94496 . ? . description=dust scaffold_109 . exon 86566 86702 . + . ID=Physo142160.3;Parent=Physo142160;constitutive=1;ensembl_phase=1;rank=3 scaffold_109 ensembl protein_coding_gene 91503 93884 . - . ID=Physo142161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090017;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 91503 93884 . - . ID=Physo142161;Parent=Physo142161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 91503 93884 . - 0 ID=Physo142161;Parent=Physo142161;rank=1 scaffold_109 . exon 91503 93884 . - . ID=Physo142161.1;Parent=Physo142161;constitutive=1;rank=1 scaffold_109 . repeat_region 97569 97599 . ? . description=trf scaffold_109 . repeat_region 97880 97904 . ? . description=trf scaffold_109 . biological_region 98261 98265 0.999 - . logic_name=eponine scaffold_109 . biological_region 98465 98468 0.999 - . logic_name=eponine scaffold_109 . biological_region 98832 98832 0.999 - . logic_name=eponine scaffold_109 . biological_region 99385 99385 0.999 + . logic_name=eponine scaffold_109 . biological_region 99414 99416 0.999 - . logic_name=eponine scaffold_109 . biological_region 100442 100445 0.999 - . logic_name=eponine scaffold_109 . biological_region 100465 100469 0.999 - . logic_name=eponine scaffold_109 . biological_region 101474 101476 0.999 - . logic_name=eponine scaffold_109 . biological_region 101512 101514 0.999 - . logic_name=eponine scaffold_109 . biological_region 101764 101766 0.999 + . logic_name=eponine scaffold_109 . biological_region 101873 101875 0.999 - . logic_name=eponine scaffold_109 . repeat_region 102198 102262 . ? . description=trf scaffold_109 . biological_region 102335 102342 0.999 - . logic_name=eponine scaffold_109 . biological_region 102407 102409 0.999 - . logic_name=eponine scaffold_109 . biological_region 102815 102819 0.999 - . logic_name=eponine scaffold_109 . repeat_region 102943 102979 . ? . description=trf scaffold_109 . repeat_region 102965 102985 . ? . description=trf scaffold_109 ensembl protein_coding_gene 97972 98907 . + . ID=Physo142162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090018;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 97972 98907 . + . ID=Physo142162;Parent=Physo142162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 97972 98907 . + 0 ID=Physo142162;Parent=Physo142162;rank=1 scaffold_109 . exon 97972 98907 . + . ID=Physo142162.1;Parent=Physo142162;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 102685 103236 . + . ID=Physo142166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090022;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 102685 103236 . + . ID=Physo142166;Parent=Physo142166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . exon 102685 103236 . + . ID=Physo142166.1;Parent=Physo142166;constitutive=1;ensembl_phase=-1;rank=1 scaffold_109 . CDS 102721 103236 . + 0 ID=Physo142166;Parent=Physo142166;rank=1 scaffold_109 ensembl protein_coding_gene 105228 107144 . + . ID=Physo142167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090023;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 105228 107144 . + . ID=Physo142167;Parent=Physo142167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 105228 105595 . + 0 ID=Physo142167;Parent=Physo142167;rank=1 scaffold_109 . exon 105228 105595 . + . ID=Physo142167.1;Parent=Physo142167;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 105754 105965 . + 0 ID=Physo142167;Parent=Physo142167;rank=2 scaffold_109 . CDS 106055 106797 . + 0 ID=Physo142167;Parent=Physo142167;rank=3 scaffold_109 . CDS 106905 107144 . + 0 ID=Physo142167;Parent=Physo142167;rank=4 scaffold_109 ensembl protein_coding_gene 99236 99772 . + . ID=Physo158482;biotype=protein_coding;external_name=C_scaffold_109000008;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 99236 99772 . + . ID=Physo158482;Parent=Physo158482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 99236 99772 . + 0 ID=Physo158482;Parent=Physo158482;rank=1 scaffold_109 . exon 99236 99772 . + . ID=Physo158482.1;Parent=Physo158482;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 100089 101838 . - . ID=Physo158483;biotype=protein_coding;external_name=C_scaffold_109000009;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 100089 101838 . - . ID=Physo158483;Parent=Physo158483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 100089 100153 . - 0 ID=Physo158483;Parent=Physo158483;rank=9 scaffold_109 . exon 100089 100153 . - . ID=Physo158483.9;Parent=Physo158483;constitutive=1;ensembl_phase=1;rank=9 scaffold_109 . CDS 100175 100652 . - 0 ID=Physo158483;Parent=Physo158483;rank=8 scaffold_109 . exon 100175 100652 . - . ID=Physo158483.8;Parent=Physo158483;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_109 . CDS 100674 100694 . - 0 ID=Physo158483;Parent=Physo158483;rank=7 scaffold_109 . exon 100674 100694 . - . ID=Physo158483.7;Parent=Physo158483;constitutive=1;rank=7 scaffold_109 . CDS 100765 100845 . - 0 ID=Physo158483;Parent=Physo158483;rank=6 scaffold_109 . exon 100765 100845 . - . ID=Physo158483.6;Parent=Physo158483;constitutive=1;rank=6 scaffold_109 . CDS 100917 101039 . - 0 ID=Physo158483;Parent=Physo158483;rank=5 scaffold_109 . exon 100917 101039 . - . ID=Physo158483.5;Parent=Physo158483;constitutive=1;rank=5 scaffold_109 . CDS 101107 101226 . - 0 ID=Physo158483;Parent=Physo158483;rank=4 scaffold_109 . exon 101107 101226 . - . ID=Physo158483.4;Parent=Physo158483;constitutive=1;rank=4 scaffold_109 . CDS 101291 101481 . - 0 ID=Physo158483;Parent=Physo158483;rank=3 scaffold_109 . exon 101291 101481 . - . ID=Physo158483.3;Parent=Physo158483;constitutive=1;ensembl_phase=1;rank=3 scaffold_109 . CDS 101560 101594 . - 0 ID=Physo158483;Parent=Physo158483;rank=2 scaffold_109 . exon 101560 101594 . - . ID=Physo158483.2;Parent=Physo158483;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 101666 101838 . - 0 ID=Physo158483;Parent=Physo158483;rank=1 scaffold_109 . exon 101666 101838 . - . ID=Physo158483.1;Parent=Physo158483;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . repeat_region 112001 112009 . ? . description=dust scaffold_109 . repeat_region 112279 112287 . ? . description=dust scaffold_109 . repeat_region 115211 115260 . ? . description=dust scaffold_109 . exon 105754 105965 . + . ID=Physo142167.2;Parent=Physo142167;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_109 . exon 106055 106797 . + . ID=Physo142167.3;Parent=Physo142167;constitutive=1;ensembl_phase=1;rank=3 scaffold_109 . exon 106905 107144 . + . ID=Physo142167.4;Parent=Physo142167;constitutive=1;rank=4 scaffold_109 ensembl protein_coding_gene 109035 111258 . + . ID=Physo142168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090024;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 109035 111258 . + . ID=Physo142168;Parent=Physo142168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 109035 110164 . + 0 ID=Physo142168;Parent=Physo142168;rank=1 scaffold_109 . exon 109035 110164 . + . ID=Physo142168.1;Parent=Physo142168;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 110373 111258 . + 0 ID=Physo142168;Parent=Physo142168;rank=2 scaffold_109 . exon 110373 111258 . + . ID=Physo142168.2;Parent=Physo142168;constitutive=1;ensembl_phase=2;rank=2 scaffold_109 ensembl protein_coding_gene 114216 118696 . + . ID=Physo142169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090025;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 114216 118696 . + . ID=Physo142169;Parent=Physo142169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 114216 114221 . + 0 ID=Physo142169;Parent=Physo142169;rank=1 scaffold_109 . exon 114216 114221 . + . ID=Physo142169.1;Parent=Physo142169;constitutive=1;rank=1 scaffold_109 . CDS 114348 114503 . + 0 ID=Physo142169;Parent=Physo142169;rank=2 scaffold_109 . exon 114348 114503 . + . ID=Physo142169.2;Parent=Physo142169;constitutive=1;rank=2 scaffold_109 . CDS 114618 115107 . + 0 ID=Physo142169;Parent=Physo142169;rank=3 scaffold_109 . exon 114618 115107 . + . ID=Physo142169.3;Parent=Physo142169;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_109 . CDS 115331 117875 . + 0 ID=Physo142169;Parent=Physo142169;rank=4 scaffold_109 . CDS 117951 117969 . + 0 ID=Physo142169;Parent=Physo142169;rank=5 scaffold_109 . CDS 118110 118210 . + 0 ID=Physo142169;Parent=Physo142169;rank=6 scaffold_109 . CDS 118285 118460 . + 0 ID=Physo142169;Parent=Physo142169;rank=7 scaffold_109 . CDS 118545 118696 . + 0 ID=Physo142169;Parent=Physo142169;rank=8 scaffold_109 . repeat_region 115702 115749 . ? . description=trf scaffold_109 . repeat_region 115702 115749 . + . description=(CTG)n scaffold_109 . repeat_region 115764 115954 . ? . description=trf scaffold_109 . biological_region 117024 117026 0.999 - . logic_name=eponine scaffold_109 . biological_region 117255 117256 0.999 - . logic_name=eponine scaffold_109 . repeat_region 119491 119533 . ? . description=trf scaffold_109 . biological_region 119553 119556 0.999 + . logic_name=eponine scaffold_109 . biological_region 119622 119624 0.999 + . logic_name=eponine scaffold_109 . biological_region 119641 119644 0.999 + . logic_name=eponine scaffold_109 . biological_region 119716 119720 0.999 + . logic_name=eponine scaffold_109 . biological_region 119733 119733 0.999 + . logic_name=eponine scaffold_109 . biological_region 119789 119793 0.999 - . logic_name=eponine scaffold_109 . biological_region 119812 119820 0.999 - . logic_name=eponine scaffold_109 . repeat_region 120277 120356 . ? . description=trf scaffold_109 . repeat_region 120277 120360 . ? . description=trf scaffold_109 . repeat_region 120808 120901 . ? . description=trf scaffold_109 . biological_region 123459 123465 0.999 + . logic_name=eponine scaffold_109 ensembl protein_coding_gene 120190 123212 . + . ID=Physo122607;biotype=protein_coding;external_name=estExt_Genewise1.C_1090026;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 120190 123212 . + . ID=Physo122607;Parent=Physo122607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . exon 120190 120426 . + . ID=Physo122607.1;Parent=Physo122607;constitutive=1;ensembl_phase=-1;rank=1 scaffold_109 . CDS 120391 120426 . + 0 ID=Physo122607;Parent=Physo122607;rank=1 scaffold_109 . CDS 120962 122218 . + 0 ID=Physo122607;Parent=Physo122607;rank=2 scaffold_109 . exon 120962 122218 . + . ID=Physo122607.2;Parent=Physo122607;constitutive=1;rank=2 scaffold_109 . CDS 122288 122473 . + 0 ID=Physo122607;Parent=Physo122607;rank=3 scaffold_109 . exon 122288 122473 . + . ID=Physo122607.3;Parent=Physo122607;constitutive=1;rank=3 scaffold_109 . CDS 122516 123073 . + 0 ID=Physo122607;Parent=Physo122607;rank=4 scaffold_109 . exon 122516 123073 . + . ID=Physo122607.4;Parent=Physo122607;constitutive=1;rank=4 scaffold_109 . CDS 123147 123212 . + 0 ID=Physo122607;Parent=Physo122607;rank=5 scaffold_109 . exon 123147 123212 . + . ID=Physo122607.5;Parent=Physo122607;constitutive=1;rank=5 scaffold_109 . exon 115331 117875 . + . ID=Physo142169.4;Parent=Physo142169;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_109 . exon 117951 117969 . + . ID=Physo142169.5;Parent=Physo142169;constitutive=1;ensembl_phase=2;rank=5 scaffold_109 . exon 118110 118210 . + . ID=Physo142169.6;Parent=Physo142169;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_109 . exon 118285 118460 . + . ID=Physo142169.7;Parent=Physo142169;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_109 . exon 118545 118696 . + . ID=Physo142169.8;Parent=Physo142169;constitutive=1;ensembl_phase=1;rank=8 scaffold_109 ensembl protein_coding_gene 118752 119798 . - . ID=Physo142170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090026;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 118752 119798 . - . ID=Physo142170;Parent=Physo142170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 118752 118971 . - 0 ID=Physo142170;Parent=Physo142170;rank=2 scaffold_109 . exon 118752 118971 . - . ID=Physo142170.2;Parent=Physo142170;constitutive=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 119038 119798 . - 0 ID=Physo142170;Parent=Physo142170;rank=1 scaffold_109 . exon 119038 119798 . - . ID=Physo142170.1;Parent=Physo142170;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 ensembl protein_coding_gene 134102 135070 . - . ID=Physo109451;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1090003;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 134102 135070 . - . ID=Physo109451;Parent=Physo109451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 134102 135070 . - 0 ID=Physo109451;Parent=Physo109451;rank=1 scaffold_109 . exon 134102 135070 . - . ID=Physo109451.1;Parent=Physo109451;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 127268 129461 . + . ID=Physo142172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090028;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 127268 129461 . + . ID=Physo142172;Parent=Physo142172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 127268 128768 . + 0 ID=Physo142172;Parent=Physo142172;rank=1 scaffold_109 . exon 127268 128768 . + . ID=Physo142172.1;Parent=Physo142172;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . CDS 129328 129461 . + 0 ID=Physo142172;Parent=Physo142172;rank=2 scaffold_109 . exon 129328 129461 . + . ID=Physo142172.2;Parent=Physo142172;constitutive=1;ensembl_phase=1;rank=2 scaffold_109 ensembl protein_coding_gene 130946 133930 . + . ID=Physo142173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090029;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 130946 133930 . + . ID=Physo142173;Parent=Physo142173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 130946 133930 . + 0 ID=Physo142173;Parent=Physo142173;rank=1 scaffold_109 . exon 130946 133930 . + . ID=Physo142173.1;Parent=Physo142173;constitutive=1;rank=1 scaffold_109 . biological_region 134993 134994 0.999 + . logic_name=eponine scaffold_109 . biological_region 135893 135897 0.999 - . logic_name=eponine scaffold_109 . repeat_region 137491 137537 . ? . description=trf scaffold_109 . repeat_region 137491 137540 . ? . description=trf scaffold_109 . repeat_region 137491 137540 . + . description=(CTG)n scaffold_109 . repeat_region 137498 137537 . ? . description=dust scaffold_109 . repeat_region 137499 137540 . ? . description=trf scaffold_109 . repeat_region 139109 139124 . ? . description=dust scaffold_109 . biological_region 139819 139821 0.999 - . logic_name=eponine scaffold_109 . biological_region 139824 139830 0.999 + . logic_name=eponine scaffold_109 . biological_region 139858 139861 0.999 + . logic_name=eponine scaffold_109 . biological_region 139872 139873 0.999 - . logic_name=eponine scaffold_109 . biological_region 139896 139900 0.999 - . logic_name=eponine scaffold_109 . biological_region 142285 142288 0.999 + . logic_name=eponine scaffold_109 ensembl protein_coding_gene 135344 136000 . + . ID=Physo142175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090031;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 135344 136000 . + . ID=Physo142175;Parent=Physo142175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 135344 136000 . + 0 ID=Physo142175;Parent=Physo142175;rank=1 scaffold_109 . exon 135344 136000 . + . ID=Physo142175.1;Parent=Physo142175;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 136939 137323 . + . ID=Physo142176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090032;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 136939 137323 . + . ID=Physo142176;Parent=Physo142176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 136939 137195 . + 0 ID=Physo142176;Parent=Physo142176;rank=1 scaffold_109 . exon 136939 137195 . + . ID=Physo142176.1;Parent=Physo142176;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 137269 137323 . + 0 ID=Physo142176;Parent=Physo142176;rank=2 scaffold_109 . exon 137269 137323 . + . ID=Physo142176.2;Parent=Physo142176;constitutive=1;ensembl_phase=2;rank=2 scaffold_109 ensembl protein_coding_gene 141139 141750 . - . ID=Physo142179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090035;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 141139 141750 . - . ID=Physo142179;Parent=Physo142179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 141139 141750 . - 0 ID=Physo142179;Parent=Physo142179;rank=1 scaffold_109 . exon 141139 141750 . - . ID=Physo142179.1;Parent=Physo142179;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 141861 142163 . + . ID=Physo142180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090036;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 141861 142163 . + . ID=Physo142180;Parent=Physo142180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 141861 142163 . + 0 ID=Physo142180;Parent=Physo142180;rank=1 scaffold_109 . exon 141861 142163 . + . ID=Physo142180.1;Parent=Physo142180;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 142682 144856 . - . ID=Physo142181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090037;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 142682 144856 . - . ID=Physo142181;Parent=Physo142181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 142682 142864 . - 0 ID=Physo142181;Parent=Physo142181;rank=6 scaffold_109 . exon 142682 142864 . - . ID=Physo142181.6;Parent=Physo142181;constitutive=1;rank=6 scaffold_109 . CDS 142966 143435 . - 0 ID=Physo142181;Parent=Physo142181;rank=5 scaffold_109 . exon 142966 143435 . - . ID=Physo142181.5;Parent=Physo142181;constitutive=1;ensembl_phase=1;rank=5 scaffold_109 . CDS 143505 143689 . - 0 ID=Physo142181;Parent=Physo142181;rank=4 scaffold_109 . exon 143505 143689 . - . ID=Physo142181.4;Parent=Physo142181;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_109 . CDS 143843 144024 . - 0 ID=Physo142181;Parent=Physo142181;rank=3 scaffold_109 . exon 143843 144024 . - . ID=Physo142181.3;Parent=Physo142181;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_109 . CDS 144101 144220 . - 0 ID=Physo142181;Parent=Physo142181;rank=2 scaffold_109 . CDS 144306 144794 . - 0 ID=Physo142181;Parent=Physo142181;rank=1 scaffold_109 ensembl protein_coding_gene 137496 139930 . - . ID=Physo158488;biotype=protein_coding;external_name=C_scaffold_109000014;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 137496 139930 . - . ID=Physo158488;Parent=Physo158488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 137496 138187 . - 0 ID=Physo158488;Parent=Physo158488;rank=7 scaffold_109 . exon 137496 138187 . - . ID=Physo158488.7;Parent=Physo158488;constitutive=1;ensembl_phase=1;rank=7 scaffold_109 . CDS 138275 138635 . - 0 ID=Physo158488;Parent=Physo158488;rank=6 scaffold_109 . exon 138275 138635 . - . ID=Physo158488.6;Parent=Physo158488;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_109 . CDS 138708 138805 . - 0 ID=Physo158488;Parent=Physo158488;rank=5 scaffold_109 . exon 138708 138805 . - . ID=Physo158488.5;Parent=Physo158488;constitutive=1;ensembl_phase=1;rank=5 scaffold_109 . CDS 138970 139010 . - 0 ID=Physo158488;Parent=Physo158488;rank=4 scaffold_109 . exon 138970 139010 . - . ID=Physo158488.4;Parent=Physo158488;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_109 . CDS 139065 139101 . - 0 ID=Physo158488;Parent=Physo158488;rank=3 scaffold_109 . exon 139065 139101 . - . ID=Physo158488.3;Parent=Physo158488;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_109 . CDS 139175 139345 . - 0 ID=Physo158488;Parent=Physo158488;rank=2 scaffold_109 . exon 139175 139345 . - . ID=Physo158488.2;Parent=Physo158488;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_109 . CDS 139417 139930 . - 0 ID=Physo158488;Parent=Physo158488;rank=1 scaffold_109 . exon 139417 139930 . - . ID=Physo158488.1;Parent=Physo158488;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 ensembl protein_coding_gene 140093 141045 . + . ID=Physo158489;biotype=protein_coding;external_name=C_scaffold_109000015;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 140093 141045 . + . ID=Physo158489;Parent=Physo158489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 140093 140290 . + 0 ID=Physo158489;Parent=Physo158489;rank=1 scaffold_109 . exon 140093 140290 . + . ID=Physo158489.1;Parent=Physo158489;constitutive=1;rank=1 scaffold_109 . CDS 140321 140488 . + 0 ID=Physo158489;Parent=Physo158489;rank=2 scaffold_109 . exon 140321 140488 . + . ID=Physo158489.2;Parent=Physo158489;constitutive=1;rank=2 scaffold_109 . CDS 140576 140604 . + 0 ID=Physo158489;Parent=Physo158489;rank=3 scaffold_109 . exon 140576 140604 . + . ID=Physo158489.3;Parent=Physo158489;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_109 . CDS 140687 140882 . + 0 ID=Physo158489;Parent=Physo158489;rank=4 scaffold_109 . exon 140687 140882 . + . ID=Physo158489.4;Parent=Physo158489;constitutive=1;ensembl_phase=2;rank=4 scaffold_109 . CDS 140950 141045 . + 0 ID=Physo158489;Parent=Physo158489;rank=5 scaffold_109 . exon 140950 141045 . + . ID=Physo158489.5;Parent=Physo158489;constitutive=1;rank=5 scaffold_109 . exon 144101 144220 . - . ID=Physo142181.2;Parent=Physo142181;constitutive=1;rank=2 scaffold_109 . exon 144306 144856 . - . ID=Physo142181.1;Parent=Physo142181;constitutive=1;ensembl_phase=-1;rank=1 scaffold_109 ensembl protein_coding_gene 146553 149927 . + . ID=Physo142182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090038;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 146553 149927 . + . ID=Physo142182;Parent=Physo142182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 146553 149207 . + 0 ID=Physo142182;Parent=Physo142182;rank=1 scaffold_109 . exon 146553 149207 . + . ID=Physo142182.1;Parent=Physo142182;constitutive=1;rank=1 scaffold_109 . CDS 149412 149882 . + 0 ID=Physo142182;Parent=Physo142182;rank=2 scaffold_109 . exon 149412 149927 . + . ID=Physo142182.2;Parent=Physo142182;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_109 ensembl protein_coding_gene 152505 153124 . - . ID=Physo142183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090039;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 152505 153124 . - . ID=Physo142183;Parent=Physo142183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 152505 152624 . - 0 ID=Physo142183;Parent=Physo142183;rank=2 scaffold_109 . exon 152505 152624 . - . ID=Physo142183.2;Parent=Physo142183;constitutive=1;rank=2 scaffold_109 . CDS 152696 153124 . - 0 ID=Physo142183;Parent=Physo142183;rank=1 scaffold_109 . exon 152696 153124 . - . ID=Physo142183.1;Parent=Physo142183;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 153548 155109 . + . ID=Physo142184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090040;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 153548 155109 . + . ID=Physo142184;Parent=Physo142184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 153548 154849 . + 0 ID=Physo142184;Parent=Physo142184;rank=1 scaffold_109 . exon 153548 154849 . + . ID=Physo142184.1;Parent=Physo142184;constitutive=1;rank=1 scaffold_109 . CDS 154920 155018 . + 0 ID=Physo142184;Parent=Physo142184;rank=2 scaffold_109 . biological_region 154446 154448 0.999 + . logic_name=eponine scaffold_109 . biological_region 154544 154549 0.999 - . logic_name=eponine scaffold_109 . biological_region 158947 158948 0.999 + . logic_name=eponine scaffold_109 . exon 154920 155109 . + . ID=Physo142184.2;Parent=Physo142184;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_109 ensembl protein_coding_gene 155249 157997 . - . ID=Physo142185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090041;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 155249 157997 . - . ID=Physo142185;Parent=Physo142185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 155249 155783 . - 0 ID=Physo142185;Parent=Physo142185;rank=5 scaffold_109 . exon 155249 155783 . - . ID=Physo142185.5;Parent=Physo142185;constitutive=1;ensembl_phase=2;rank=5 scaffold_109 . CDS 155888 157079 . - 0 ID=Physo142185;Parent=Physo142185;rank=4 scaffold_109 . exon 155888 157079 . - . ID=Physo142185.4;Parent=Physo142185;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_109 . CDS 157191 157238 . - 0 ID=Physo142185;Parent=Physo142185;rank=3 scaffold_109 . exon 157191 157238 . - . ID=Physo142185.3;Parent=Physo142185;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_109 . CDS 157315 157633 . - 0 ID=Physo142185;Parent=Physo142185;rank=2 scaffold_109 . exon 157315 157633 . - . ID=Physo142185.2;Parent=Physo142185;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_109 . CDS 157701 157997 . - 0 ID=Physo142185;Parent=Physo142185;rank=1 scaffold_109 . exon 157701 157997 . - . ID=Physo142185.1;Parent=Physo142185;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 158220 159919 . + . ID=Physo142186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090042;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 158220 159919 . + . ID=Physo142186;Parent=Physo142186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 158220 159496 . + 0 ID=Physo142186;Parent=Physo142186;rank=1 scaffold_109 . exon 158220 159496 . + . ID=Physo142186.1;Parent=Physo142186;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . CDS 159676 159775 . + 0 ID=Physo142186;Parent=Physo142186;rank=2 scaffold_109 . exon 159676 159775 . + . ID=Physo142186.2;Parent=Physo142186;constitutive=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 159851 159919 . + 0 ID=Physo142186;Parent=Physo142186;rank=3 scaffold_109 . exon 159851 159919 . + . ID=Physo142186.3;Parent=Physo142186;constitutive=1;rank=3 scaffold_109 ensembl protein_coding_gene 160448 160981 . + . ID=Physo142187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090043;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 160448 160981 . + . ID=Physo142187;Parent=Physo142187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 160448 160981 . + 0 ID=Physo142187;Parent=Physo142187;rank=1 scaffold_109 . exon 160448 160981 . + . ID=Physo142187.1;Parent=Physo142187;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 162330 163235 . - . ID=Physo142188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090044;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 162330 163235 . - . ID=Physo142188;Parent=Physo142188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 162330 163235 . - 0 ID=Physo142188;Parent=Physo142188;rank=1 scaffold_109 . exon 162330 163235 . - . ID=Physo142188.1;Parent=Physo142188;constitutive=1;rank=1 scaffold_109 . repeat_region 164817 167508 . ? . description=dust scaffold_109 ensembl protein_coding_gene 164216 164749 . - . ID=Physo142189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090045;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 164216 164749 . - . ID=Physo142189;Parent=Physo142189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 164216 164749 . - 0 ID=Physo142189;Parent=Physo142189;rank=1 scaffold_109 . exon 164216 164749 . - . ID=Physo142189.1;Parent=Physo142189;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 167949 168854 . - . ID=Physo142190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090046;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 167949 168854 . - . ID=Physo142190;Parent=Physo142190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 167949 168854 . - 0 ID=Physo142190;Parent=Physo142190;rank=1 scaffold_109 . exon 167949 168854 . - . ID=Physo142190.1;Parent=Physo142190;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 169836 170739 . - . ID=Physo142191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090047;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 169836 170739 . - . ID=Physo142191;Parent=Physo142191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 169836 170393 . - 0 ID=Physo142191;Parent=Physo142191;rank=2 scaffold_109 . exon 169836 170393 . - . ID=Physo142191.2;Parent=Physo142191;constitutive=1;rank=2 scaffold_109 . CDS 170437 170739 . - 0 ID=Physo142191;Parent=Physo142191;rank=1 scaffold_109 . exon 170437 170739 . - . ID=Physo142191.1;Parent=Physo142191;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 171764 172522 . + . ID=Physo142192;biotype=protein_coding;description=Hsf transcription factor [Source:UniProtKB/TrEMBL%3BAcc:B6V9Y4];external_name=estExt_fgenesh1_pg.C_1090048;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 171764 172522 . + . ID=Physo142192;Parent=Physo142192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 171764 172522 . + 0 ID=Physo142192;Parent=Physo142192;rank=1 scaffold_109 . exon 171764 172522 . + . ID=Physo142192.1;Parent=Physo142192;constitutive=1;rank=1 scaffold_109 . biological_region 174101 174102 0.999 + . logic_name=eponine scaffold_109 . repeat_region 174893 174938 . ? . description=trf scaffold_109 . repeat_region 175126 175196 . ? . description=trf scaffold_109 . biological_region 175544 175544 0.999 - . logic_name=eponine scaffold_109 . biological_region 175568 175573 0.999 - . logic_name=eponine scaffold_109 . biological_region 175592 175596 0.999 - . logic_name=eponine scaffold_109 . biological_region 175646 175652 0.999 + . logic_name=eponine scaffold_109 . biological_region 175676 175681 0.999 + . logic_name=eponine scaffold_109 ensembl protein_coding_gene 174015 175772 . - . ID=Physo142193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090049;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 174015 175772 . - . ID=Physo142193;Parent=Physo142193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 174015 175772 . - 0 ID=Physo142193;Parent=Physo142193;rank=1 scaffold_109 . exon 174015 175772 . - . ID=Physo142193.1;Parent=Physo142193;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 177437 178117 . + . ID=Physo142194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090050;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 177437 178117 . + . ID=Physo142194;Parent=Physo142194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 177437 178117 . + 0 ID=Physo142194;Parent=Physo142194;rank=1 scaffold_109 . exon 177437 178117 . + . ID=Physo142194.1;Parent=Physo142194;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 178383 178813 . - . ID=Physo142195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090051;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 178383 178813 . - . ID=Physo142195;Parent=Physo142195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 178383 178421 . - 0 ID=Physo142195;Parent=Physo142195;rank=2 scaffold_109 . exon 178383 178421 . - . ID=Physo142195.2;Parent=Physo142195;constitutive=1;rank=2 scaffold_109 . CDS 178487 178813 . - 0 ID=Physo142195;Parent=Physo142195;rank=1 scaffold_109 . exon 178487 178813 . - . ID=Physo142195.1;Parent=Physo142195;constitutive=1;rank=1 scaffold_109 . repeat_region 188459 188467 . ? . description=dust scaffold_109 . repeat_region 188738 188749 . ? . description=dust scaffold_109 . repeat_region 191597 191655 . ? . description=dust scaffold_109 ensembl protein_coding_gene 187591 193336 . + . ID=Physo142196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090052;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 187591 193336 . + . ID=Physo142196;Parent=Physo142196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 187591 187615 . + 0 ID=Physo142196;Parent=Physo142196;rank=1 scaffold_109 . exon 187591 187615 . + . ID=Physo142196.1;Parent=Physo142196;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 . CDS 188499 188593 . + 0 ID=Physo142196;Parent=Physo142196;rank=2 scaffold_109 . exon 188499 188593 . + . ID=Physo142196.2;Parent=Physo142196;constitutive=1;ensembl_phase=1;rank=2 scaffold_109 . CDS 189408 190253 . + 0 ID=Physo142196;Parent=Physo142196;rank=3 scaffold_109 . exon 189408 190253 . + . ID=Physo142196.3;Parent=Physo142196;constitutive=1;rank=3 scaffold_109 . CDS 190316 191131 . + 0 ID=Physo142196;Parent=Physo142196;rank=4 scaffold_109 . exon 190316 191131 . + . ID=Physo142196.4;Parent=Physo142196;constitutive=1;rank=4 scaffold_109 . CDS 191233 192652 . + 0 ID=Physo142196;Parent=Physo142196;rank=5 scaffold_109 . exon 191233 192652 . + . ID=Physo142196.5;Parent=Physo142196;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_109 . CDS 193131 193336 . + 0 ID=Physo142196;Parent=Physo142196;rank=6 scaffold_109 . biological_region 192114 192116 0.999 - . logic_name=eponine scaffold_109 . biological_region 192128 192131 0.999 + . logic_name=eponine scaffold_109 . biological_region 192198 192200 0.999 - . logic_name=eponine scaffold_109 . biological_region 192529 192535 0.999 - . logic_name=eponine scaffold_109 . biological_region 193056 193056 0.999 + . logic_name=eponine scaffold_109 . biological_region 193060 193062 0.999 - . logic_name=eponine scaffold_109 . biological_region 193095 193095 0.999 - . logic_name=eponine scaffold_109 . biological_region 193329 193330 0.999 - . logic_name=eponine scaffold_109 . biological_region 193476 193482 0.999 - . logic_name=eponine scaffold_109 . biological_region 193677 193678 0.999 - . logic_name=eponine scaffold_109 . biological_region 194027 194028 0.999 - . logic_name=eponine scaffold_109 . biological_region 194681 194687 0.999 + . logic_name=eponine scaffold_109 . biological_region 194701 194703 0.999 - . logic_name=eponine scaffold_109 . biological_region 194714 194718 0.999 - . logic_name=eponine scaffold_109 . repeat_region 194726 194810 . ? . description=trf scaffold_109 . biological_region 194745 194747 0.999 - . logic_name=eponine scaffold_109 . biological_region 194759 194762 0.999 - . logic_name=eponine scaffold_109 . biological_region 195404 195406 0.999 - . logic_name=eponine scaffold_109 . biological_region 196767 196769 0.999 + . logic_name=eponine scaffold_109 . biological_region 196866 196872 0.999 - . logic_name=eponine scaffold_109 . repeat_region 197096 197138 . ? . description=trf scaffold_109 . biological_region 197367 197371 0.999 + . logic_name=eponine scaffold_109 . biological_region 197557 197560 0.999 - . logic_name=eponine scaffold_109 . biological_region 198174 198181 0.999 + . logic_name=eponine scaffold_109 . biological_region 198709 198716 0.999 + . logic_name=eponine scaffold_109 . biological_region 198718 198718 0.999 - . logic_name=eponine scaffold_109 . biological_region 198754 198761 0.999 + . logic_name=eponine scaffold_109 . biological_region 198774 198775 0.999 + . logic_name=eponine scaffold_109 . biological_region 198801 198809 0.999 - . logic_name=eponine scaffold_109 . biological_region 198848 198854 0.999 - . logic_name=eponine scaffold_109 . biological_region 198881 198886 0.999 - . logic_name=eponine scaffold_109 . biological_region 199328 199329 0.999 + . logic_name=eponine scaffold_109 . biological_region 199383 199384 0.999 + . logic_name=eponine scaffold_109 . biological_region 199676 199678 0.999 - . logic_name=eponine scaffold_109 . biological_region 200380 200386 0.999 + . logic_name=eponine scaffold_109 . repeat_region 200465 200526 . ? . description=trf scaffold_109 . biological_region 200507 200513 0.999 - . logic_name=eponine scaffold_109 . exon 193131 193336 . + . ID=Physo142196.6;Parent=Physo142196;constitutive=1;ensembl_phase=1;rank=6 scaffold_109 ensembl protein_coding_gene 193819 199641 . - . ID=Physo142197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090053;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 193819 199641 . - . ID=Physo142197;Parent=Physo142197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 193819 194030 . - 0 ID=Physo142197;Parent=Physo142197;rank=9 scaffold_109 . exon 193819 194030 . - . ID=Physo142197.9;Parent=Physo142197;constitutive=1;ensembl_phase=1;rank=9 scaffold_109 . CDS 194075 194240 . - 0 ID=Physo142197;Parent=Physo142197;rank=8 scaffold_109 . exon 194075 194240 . - . ID=Physo142197.8;Parent=Physo142197;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_109 . CDS 194289 194616 . - 0 ID=Physo142197;Parent=Physo142197;rank=7 scaffold_109 . exon 194289 194616 . - . ID=Physo142197.7;Parent=Physo142197;constitutive=1;ensembl_phase=2;rank=7 scaffold_109 . CDS 194658 195535 . - 0 ID=Physo142197;Parent=Physo142197;rank=6 scaffold_109 . exon 194658 195535 . - . ID=Physo142197.6;Parent=Physo142197;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_109 . CDS 195589 197097 . - 0 ID=Physo142197;Parent=Physo142197;rank=5 scaffold_109 . exon 195589 197097 . - . ID=Physo142197.5;Parent=Physo142197;constitutive=1;rank=5 scaffold_109 . CDS 197199 198254 . - 0 ID=Physo142197;Parent=Physo142197;rank=4 scaffold_109 . exon 197199 198254 . - . ID=Physo142197.4;Parent=Physo142197;constitutive=1;rank=4 scaffold_109 . CDS 198547 199188 . - 0 ID=Physo142197;Parent=Physo142197;rank=3 scaffold_109 . exon 198547 199188 . - . ID=Physo142197.3;Parent=Physo142197;constitutive=1;rank=3 scaffold_109 . CDS 199214 199336 . - 0 ID=Physo142197;Parent=Physo142197;rank=2 scaffold_109 . exon 199214 199336 . - . ID=Physo142197.2;Parent=Physo142197;constitutive=1;rank=2 scaffold_109 . CDS 199393 199641 . - 0 ID=Physo142197;Parent=Physo142197;rank=1 scaffold_109 . exon 199393 199641 . - . ID=Physo142197.1;Parent=Physo142197;constitutive=1;rank=1 scaffold_109 . repeat_region 203075 204022 . ? . description=dust scaffold_109 . repeat_region 205766 206182 . ? . description=dust scaffold_109 . repeat_region 206974 213408 . ? . description=dust scaffold_109 ensembl protein_coding_gene 201722 204880 . - . ID=Physo142198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090054;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 201722 204880 . - . ID=Physo142198;Parent=Physo142198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 201722 202015 . - 0 ID=Physo142198;Parent=Physo142198;rank=4 scaffold_109 . exon 201722 202015 . - . ID=Physo142198.4;Parent=Physo142198;constitutive=1;rank=4 scaffold_109 . CDS 202057 202294 . - 0 ID=Physo142198;Parent=Physo142198;rank=3 scaffold_109 . exon 202057 202294 . - . ID=Physo142198.3;Parent=Physo142198;constitutive=1;ensembl_phase=2;rank=3 scaffold_109 . CDS 202397 202418 . - 0 ID=Physo142198;Parent=Physo142198;rank=2 scaffold_109 . exon 202397 202418 . - . ID=Physo142198.2;Parent=Physo142198;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_109 . CDS 204124 204880 . - 0 ID=Physo142198;Parent=Physo142198;rank=1 scaffold_109 . exon 204124 204880 . - . ID=Physo142198.1;Parent=Physo142198;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_109 ensembl protein_coding_gene 205151 206650 . - . ID=Physo142199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090055;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 205151 206650 . - . ID=Physo142199;Parent=Physo142199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . exon 205151 205763 . - . ID=Physo142199.3;Parent=Physo142199;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_109 . CDS 205213 205763 . - 0 ID=Physo142199;Parent=Physo142199;rank=3 scaffold_109 . CDS 206504 206514 . - 0 ID=Physo142199;Parent=Physo142199;rank=2 scaffold_109 . exon 206504 206514 . - . ID=Physo142199.2;Parent=Physo142199;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_109 . CDS 206544 206650 . - 0 ID=Physo142199;Parent=Physo142199;rank=1 scaffold_109 . exon 206544 206650 . - . ID=Physo142199.1;Parent=Physo142199;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_109 . biological_region 218331 218337 0.999 + . logic_name=eponine scaffold_109 . biological_region 218342 218345 0.999 - . logic_name=eponine scaffold_109 . biological_region 218384 218392 0.999 - . logic_name=eponine scaffold_109 . biological_region 218417 218422 0.999 - . logic_name=eponine scaffold_109 . repeat_region 219144 219180 . ? . description=trf scaffold_109 . biological_region 219191 219194 0.999 - . logic_name=eponine scaffold_109 . biological_region 219397 219398 0.999 - . logic_name=eponine scaffold_109 . biological_region 219485 219486 0.999 + . logic_name=eponine scaffold_109 . biological_region 219501 219506 0.999 - . logic_name=eponine scaffold_109 . biological_region 219502 219506 0.999 + . logic_name=eponine scaffold_109 . biological_region 219547 219550 0.999 - . logic_name=eponine scaffold_109 . biological_region 219569 219570 0.999 - . logic_name=eponine scaffold_109 . biological_region 220205 220209 0.999 + . logic_name=eponine scaffold_109 ensembl protein_coding_gene 219283 220576 . + . ID=Physo142200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090056;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 219283 220576 . + . ID=Physo142200;Parent=Physo142200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . exon 219283 220576 . + . ID=Physo142200.1;Parent=Physo142200;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_109 . CDS 219303 220487 . + 0 ID=Physo142200;Parent=Physo142200;rank=1 scaffold_109 . repeat_region 229466 229481 . ? . description=dust scaffold_109 . repeat_region 229616 229623 . ? . description=dust scaffold_109 ensembl protein_coding_gene 221301 222107 . - . ID=Physo142201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090057;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 221301 222107 . - . ID=Physo142201;Parent=Physo142201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 221301 222107 . - 0 ID=Physo142201;Parent=Physo142201;rank=1 scaffold_109 . exon 221301 222107 . - . ID=Physo142201.1;Parent=Physo142201;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 227388 228599 . - . ID=Physo142202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090058;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 227388 228599 . - . ID=Physo142202;Parent=Physo142202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 227388 228179 . - 0 ID=Physo142202;Parent=Physo142202;rank=1 scaffold_109 . exon 227388 228599 . - . ID=Physo142202.1;Parent=Physo142202;constitutive=1;ensembl_phase=-1;rank=1 scaffold_109 . biological_region 233069 233070 0.999 + . logic_name=eponine scaffold_109 . biological_region 233730 233731 0.999 + . logic_name=eponine scaffold_109 . biological_region 234145 234150 0.999 - . logic_name=eponine scaffold_109 . biological_region 234844 234848 0.999 + . logic_name=eponine scaffold_109 . biological_region 234941 234944 0.999 - . logic_name=eponine scaffold_109 . biological_region 235017 235019 0.999 - . logic_name=eponine scaffold_109 . repeat_region 235096 235119 . ? . description=trf scaffold_109 . repeat_region 236338 236641 . - . description=GypsyPi-1c_LTR scaffold_109 . repeat_region 236642 236963 . - . description=GypsyPi-1c_I-int scaffold_109 . biological_region 236895 236896 0.999 + . logic_name=eponine scaffold_109 . biological_region 237089 237095 0.999 + . logic_name=eponine scaffold_109 . biological_region 237454 237454 0.999 + . logic_name=eponine scaffold_109 . repeat_region 237532 240078 . - . description=GypsyPi-1c_I-int scaffold_109 . biological_region 238874 238877 0.999 - . logic_name=eponine scaffold_109 . biological_region 239592 239596 0.999 + . logic_name=eponine scaffold_109 . biological_region 240042 240043 0.999 - . logic_name=eponine scaffold_109 ensembl protein_coding_gene 230602 231495 . + . ID=Physo109452;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1090004;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 230602 231495 . + . ID=Physo109452;Parent=Physo109452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 230602 231495 . + 0 ID=Physo109452;Parent=Physo109452;rank=1 scaffold_109 . exon 230602 231495 . + . ID=Physo109452.1;Parent=Physo109452;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 239443 239907 . - . ID=Physo109453;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1090005;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 239443 239907 . - . ID=Physo109453;Parent=Physo109453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 239443 239907 . - 0 ID=Physo109453;Parent=Physo109453;rank=1 scaffold_109 . exon 239443 239907 . - . ID=Physo109453.1;Parent=Physo109453;constitutive=1;rank=1 scaffold_109 ensembl protein_coding_gene 232028 232942 . - . ID=Physo122623;biotype=protein_coding;external_name=estExt_Genewise1.C_1090042;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 232028 232942 . - . ID=Physo122623;Parent=Physo122623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 232028 232906 . - 0 ID=Physo122623;Parent=Physo122623;rank=1 scaffold_109 . exon 232028 232942 . - . ID=Physo122623.1;Parent=Physo122623;constitutive=1;ensembl_phase=-1;rank=1 scaffold_109 ensembl protein_coding_gene 236827 239018 . + . ID=Physo142205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1090061;logic_name=jgi_physo1_1 scaffold_109 ensembl transcript 236827 239018 . + . ID=Physo142205;Parent=Physo142205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_109 . CDS 236827 238089 . + 0 ID=Physo142205;Parent=Physo142205;rank=1 scaffold_109 . exon 236827 238089 . + . ID=Physo142205.1;Parent=Physo142205;constitutive=1;rank=1 scaffold_109 . CDS 238128 239018 . + 0 ID=Physo142205;Parent=Physo142205;rank=2 scaffold_109 . exon 238128 239018 . + . ID=Physo142205.2;Parent=Physo142205;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_111 1 240138 scaffold_111 . repeat_region 3116 3133 . ? . description=dust scaffold_111 . repeat_region 3287 3306 . ? . description=trf scaffold_111 . repeat_region 4286 4329 . ? . description=trf scaffold_111 . repeat_region 4286 4337 . ? . description=trf scaffold_111 . biological_region 4780 4782 0.999 - . logic_name=eponine scaffold_111 . repeat_region 5043 5054 . ? . description=dust scaffold_111 . biological_region 5457 5461 0.999 - . logic_name=eponine scaffold_111 . biological_region 5633 5636 0.999 + . logic_name=eponine scaffold_111 . repeat_region 5933 5982 . ? . description=dust scaffold_111 . biological_region 6025 6030 0.999 - . logic_name=eponine scaffold_111 . biological_region 6037 6042 0.999 - . logic_name=eponine scaffold_111 . biological_region 9023 9029 0.999 - . logic_name=eponine scaffold_111 . repeat_region 9048 9055 . ? . description=dust scaffold_111 ensembl protein_coding_gene 3781 5102 . - . ID=Physo142260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110001;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 3781 5102 . - . ID=Physo142260;Parent=Physo142260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 3781 4629 . - . ID=Physo142260.3;Parent=Physo142260;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_111 . CDS 3782 4629 . - 0 ID=Physo142260;Parent=Physo142260;rank=3 scaffold_111 . CDS 4652 4991 . - 0 ID=Physo142260;Parent=Physo142260;rank=2 scaffold_111 . exon 4652 4991 . - . ID=Physo142260.2;Parent=Physo142260;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_111 . CDS 5086 5088 . - 0 ID=Physo142260;Parent=Physo142260;rank=1 scaffold_111 . exon 5086 5102 . - . ID=Physo142260.1;Parent=Physo142260;constitutive=1;ensembl_phase=-1;rank=1 scaffold_111 ensembl protein_coding_gene 5816 13064 . + . ID=Physo158495;biotype=protein_coding;external_name=C_scaffold_111000002;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 5816 13064 . + . ID=Physo158495;Parent=Physo158495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 5816 6026 . + 0 ID=Physo158495;Parent=Physo158495;rank=1 scaffold_111 . exon 5816 6026 . + . ID=Physo158495.1;Parent=Physo158495;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . CDS 6069 6117 . + 0 ID=Physo158495;Parent=Physo158495;rank=2 scaffold_111 . exon 6069 6117 . + . ID=Physo158495.2;Parent=Physo158495;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_111 . CDS 6213 6871 . + 0 ID=Physo158495;Parent=Physo158495;rank=3 scaffold_111 . exon 6213 6871 . + . ID=Physo158495.3;Parent=Physo158495;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_111 . CDS 6939 7098 . + 0 ID=Physo158495;Parent=Physo158495;rank=4 scaffold_111 . exon 6939 7098 . + . ID=Physo158495.4;Parent=Physo158495;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_111 . CDS 7177 7230 . + 0 ID=Physo158495;Parent=Physo158495;rank=5 scaffold_111 . exon 7177 7230 . + . ID=Physo158495.5;Parent=Physo158495;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_111 . CDS 7305 7391 . + 0 ID=Physo158495;Parent=Physo158495;rank=6 scaffold_111 . exon 7305 7391 . + . ID=Physo158495.6;Parent=Physo158495;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_111 . CDS 7470 9046 . + 0 ID=Physo158495;Parent=Physo158495;rank=7 scaffold_111 . exon 7470 9046 . + . ID=Physo158495.7;Parent=Physo158495;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_111 . CDS 9510 9836 . + 0 ID=Physo158495;Parent=Physo158495;rank=8 scaffold_111 . exon 9510 9836 . + . ID=Physo158495.8;Parent=Physo158495;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_111 . CDS 9903 10311 . + 0 ID=Physo158495;Parent=Physo158495;rank=9 scaffold_111 . CDS 10513 10603 . + 0 ID=Physo158495;Parent=Physo158495;rank=10 scaffold_111 . CDS 10838 11036 . + 0 ID=Physo158495;Parent=Physo158495;rank=11 scaffold_111 . CDS 11097 11629 . + 0 ID=Physo158495;Parent=Physo158495;rank=12 scaffold_111 . CDS 11651 12077 . + 0 ID=Physo158495;Parent=Physo158495;rank=13 scaffold_111 . CDS 12445 12543 . + 0 ID=Physo158495;Parent=Physo158495;rank=14 scaffold_111 . CDS 12618 12734 . + 0 ID=Physo158495;Parent=Physo158495;rank=15 scaffold_111 . CDS 12811 13064 . + 0 ID=Physo158495;Parent=Physo158495;rank=16 scaffold_111 ensembl protein_coding_gene 15916 17200 . + . ID=Physo142263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110004;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 15916 17200 . + . ID=Physo142263;Parent=Physo142263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 15916 16439 . + 0 ID=Physo142263;Parent=Physo142263;rank=1 scaffold_111 . exon 15916 16439 . + . ID=Physo142263.1;Parent=Physo142263;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 . CDS 16513 17200 . + 0 ID=Physo142263;Parent=Physo142263;rank=2 scaffold_111 . exon 16513 17200 . + . ID=Physo142263.2;Parent=Physo142263;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 ensembl protein_coding_gene 18489 18859 . + . ID=Physo142264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110005;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 18489 18859 . + . ID=Physo142264;Parent=Physo142264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 18489 18520 . + . ID=Physo142264.1;Parent=Physo142264;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_111 . CDS 18490 18520 . + 0 ID=Physo142264;Parent=Physo142264;rank=1 scaffold_111 . CDS 18626 18858 . + 0 ID=Physo142264;Parent=Physo142264;rank=2 scaffold_111 . exon 18626 18859 . + . ID=Physo142264.2;Parent=Physo142264;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_111 . exon 9903 10311 . + . ID=Physo158495.9;Parent=Physo158495;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_111 . exon 10513 10603 . + . ID=Physo158495.10;Parent=Physo158495;constitutive=1;ensembl_phase=2;rank=10 scaffold_111 . exon 10838 11036 . + . ID=Physo158495.11;Parent=Physo158495;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_111 . exon 11097 11629 . + . ID=Physo158495.12;Parent=Physo158495;constitutive=1;ensembl_phase=1;rank=12 scaffold_111 . exon 11651 12077 . + . ID=Physo158495.13;Parent=Physo158495;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_111 . exon 12445 12543 . + . ID=Physo158495.14;Parent=Physo158495;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_111 . exon 12618 12734 . + . ID=Physo158495.15;Parent=Physo158495;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_111 . exon 12811 13064 . + . ID=Physo158495.16;Parent=Physo158495;constitutive=1;ensembl_phase=1;rank=16 scaffold_111 . biological_region 19590 19591 0.999 - . logic_name=eponine scaffold_111 . repeat_region 20764 20795 . ? . description=trf scaffold_111 . biological_region 21241 21244 0.999 - . logic_name=eponine scaffold_111 . biological_region 21299 21299 0.999 + . logic_name=eponine scaffold_111 . biological_region 21841 21845 0.999 - . logic_name=eponine scaffold_111 . repeat_region 25401 25428 . ? . description=dust scaffold_111 . repeat_region 25405 25426 . ? . description=trf scaffold_111 ensembl protein_coding_gene 26423 27876 . - . ID=Physo109459;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1110001;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 26423 27876 . - . ID=Physo109459;Parent=Physo109459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 26423 26906 . - 0 ID=Physo109459;Parent=Physo109459;rank=6 scaffold_111 . exon 26423 26906 . - . ID=Physo109459.6;Parent=Physo109459;constitutive=1;ensembl_phase=2;rank=6 scaffold_111 . CDS 26979 27070 . - 0 ID=Physo109459;Parent=Physo109459;rank=5 scaffold_111 . exon 26979 27070 . - . ID=Physo109459.5;Parent=Physo109459;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_111 . CDS 27137 27340 . - 0 ID=Physo109459;Parent=Physo109459;rank=4 scaffold_111 . exon 27137 27340 . - . ID=Physo109459.4;Parent=Physo109459;constitutive=1;rank=4 scaffold_111 . CDS 27413 27494 . - 0 ID=Physo109459;Parent=Physo109459;rank=3 scaffold_111 . exon 27413 27494 . - . ID=Physo109459.3;Parent=Physo109459;constitutive=1;ensembl_phase=2;rank=3 scaffold_111 . CDS 27579 27735 . - 0 ID=Physo109459;Parent=Physo109459;rank=2 scaffold_111 . exon 27579 27735 . - . ID=Physo109459.2;Parent=Physo109459;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_111 . CDS 27825 27843 . - 0 ID=Physo109459;Parent=Physo109459;rank=1 scaffold_111 . exon 27825 27876 . - . ID=Physo109459.1;Parent=Physo109459;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_111 ensembl protein_coding_gene 19575 21206 . - . ID=Physo142265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110006;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 19575 21206 . - . ID=Physo142265;Parent=Physo142265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 19575 19814 . - . ID=Physo142265.6;Parent=Physo142265;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_111 . CDS 19722 19814 . - 0 ID=Physo142265;Parent=Physo142265;rank=6 scaffold_111 . CDS 19895 20185 . - 0 ID=Physo142265;Parent=Physo142265;rank=5 scaffold_111 . exon 19895 20185 . - . ID=Physo142265.5;Parent=Physo142265;constitutive=1;rank=5 scaffold_111 . CDS 20257 20370 . - 0 ID=Physo142265;Parent=Physo142265;rank=4 scaffold_111 . exon 20257 20370 . - . ID=Physo142265.4;Parent=Physo142265;constitutive=1;rank=4 scaffold_111 . CDS 20463 20773 . - 0 ID=Physo142265;Parent=Physo142265;rank=3 scaffold_111 . exon 20463 20773 . - . ID=Physo142265.3;Parent=Physo142265;constitutive=1;ensembl_phase=1;rank=3 scaffold_111 . CDS 20852 20987 . - 0 ID=Physo142265;Parent=Physo142265;rank=2 scaffold_111 . exon 20852 20987 . - . ID=Physo142265.2;Parent=Physo142265;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_111 . CDS 21090 21206 . - 0 ID=Physo142265;Parent=Physo142265;rank=1 scaffold_111 . exon 21090 21206 . - . ID=Physo142265.1;Parent=Physo142265;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 27985 29490 . + . ID=Physo142269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110010;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 27985 29490 . + . ID=Physo142269;Parent=Physo142269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 27985 28986 . + 0 ID=Physo142269;Parent=Physo142269;rank=1 scaffold_111 . exon 27985 28986 . + . ID=Physo142269.1;Parent=Physo142269;constitutive=1;rank=1 scaffold_111 . CDS 29068 29490 . + 0 ID=Physo142269;Parent=Physo142269;rank=2 scaffold_111 ensembl protein_coding_gene 22801 26182 . + . ID=Physo158496;biotype=protein_coding;external_name=C_scaffold_111000003;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 22801 26182 . + . ID=Physo158496;Parent=Physo158496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 22801 23205 . + . ID=Physo158496.1;Parent=Physo158496;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_111 . CDS 22803 23205 . + 0 ID=Physo158496;Parent=Physo158496;rank=1 scaffold_111 . CDS 23317 23401 . + 0 ID=Physo158496;Parent=Physo158496;rank=2 scaffold_111 . exon 23317 23401 . + . ID=Physo158496.2;Parent=Physo158496;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_111 . CDS 24156 24275 . + 0 ID=Physo158496;Parent=Physo158496;rank=3 scaffold_111 . exon 24156 24275 . + . ID=Physo158496.3;Parent=Physo158496;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_111 . CDS 24353 24389 . + 0 ID=Physo158496;Parent=Physo158496;rank=4 scaffold_111 . exon 24353 24389 . + . ID=Physo158496.4;Parent=Physo158496;constitutive=1;ensembl_phase=2;rank=4 scaffold_111 . CDS 24826 24888 . + 0 ID=Physo158496;Parent=Physo158496;rank=5 scaffold_111 . exon 24826 24888 . + . ID=Physo158496.5;Parent=Physo158496;constitutive=1;rank=5 scaffold_111 . CDS 24979 25353 . + 0 ID=Physo158496;Parent=Physo158496;rank=6 scaffold_111 . exon 24979 25353 . + . ID=Physo158496.6;Parent=Physo158496;constitutive=1;rank=6 scaffold_111 . CDS 25431 25502 . + 0 ID=Physo158496;Parent=Physo158496;rank=7 scaffold_111 . exon 25431 25502 . + . ID=Physo158496.7;Parent=Physo158496;constitutive=1;rank=7 scaffold_111 . CDS 25583 25669 . + 0 ID=Physo158496;Parent=Physo158496;rank=8 scaffold_111 . exon 25583 25669 . + . ID=Physo158496.8;Parent=Physo158496;constitutive=1;rank=8 scaffold_111 . CDS 25738 25834 . + 0 ID=Physo158496;Parent=Physo158496;rank=9 scaffold_111 . exon 25738 25834 . + . ID=Physo158496.9;Parent=Physo158496;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_111 . CDS 25900 26013 . + 0 ID=Physo158496;Parent=Physo158496;rank=10 scaffold_111 . exon 25900 26013 . + . ID=Physo158496.10;Parent=Physo158496;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_111 . CDS 26091 26182 . + 0 ID=Physo158496;Parent=Physo158496;rank=11 scaffold_111 . exon 26091 26182 . + . ID=Physo158496.11;Parent=Physo158496;constitutive=1;ensembl_phase=1;rank=11 scaffold_111 ensembl protein_coding_gene 32686 33174 . + . ID=Physo109460;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1110002;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 32686 33174 . + . ID=Physo109460;Parent=Physo109460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 32686 33174 . + 0 ID=Physo109460;Parent=Physo109460;rank=1 scaffold_111 . exon 32686 33174 . + . ID=Physo109460.1;Parent=Physo109460;constitutive=1;rank=1 scaffold_111 . exon 29068 29490 . + . ID=Physo142269.2;Parent=Physo142269;constitutive=1;rank=2 scaffold_111 ensembl protein_coding_gene 29566 30003 . - . ID=Physo142270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110011;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 29566 30003 . - . ID=Physo142270;Parent=Physo142270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 29566 29816 . - 0 ID=Physo142270;Parent=Physo142270;rank=2 scaffold_111 . exon 29566 29816 . - . ID=Physo142270.2;Parent=Physo142270;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 29919 30003 . - 0 ID=Physo142270;Parent=Physo142270;rank=1 scaffold_111 . exon 29919 30003 . - . ID=Physo142270.1;Parent=Physo142270;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 ensembl protein_coding_gene 30328 32529 . + . ID=Physo142271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110012;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 30328 32529 . + . ID=Physo142271;Parent=Physo142271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 30328 32529 . + 0 ID=Physo142271;Parent=Physo142271;rank=1 scaffold_111 . exon 30328 32529 . + . ID=Physo142271.1;Parent=Physo142271;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 34062 34874 . - . ID=Physo142273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110014;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 34062 34874 . - . ID=Physo142273;Parent=Physo142273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 34062 34874 . - 0 ID=Physo142273;Parent=Physo142273;rank=1 scaffold_111 . exon 34062 34874 . - . ID=Physo142273.1;Parent=Physo142273;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 37425 41296 . - . ID=Physo142274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110015;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 37425 41296 . - . ID=Physo142274;Parent=Physo142274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 37425 41181 . - 0 ID=Physo142274;Parent=Physo142274;rank=2 scaffold_111 . exon 37425 41181 . - . ID=Physo142274.2;Parent=Physo142274;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 41274 41296 . - 0 ID=Physo142274;Parent=Physo142274;rank=1 scaffold_111 . repeat_region 46376 46432 . ? . description=dust scaffold_111 . repeat_region 46379 46430 . ? . description=trf scaffold_111 . repeat_region 46380 46430 . ? . description=trf scaffold_111 . repeat_region 46383 46433 . ? . description=trf scaffold_111 . repeat_region 46383 46433 . ? . description=trf scaffold_111 . repeat_region 46639 46669 . ? . description=dust scaffold_111 . biological_region 46700 46704 0.999 - . logic_name=eponine scaffold_111 . biological_region 46715 46719 0.999 - . logic_name=eponine scaffold_111 . biological_region 46766 46773 0.999 - . logic_name=eponine scaffold_111 . biological_region 47876 47878 0.999 - . logic_name=eponine scaffold_111 ensembl protein_coding_gene 45163 46337 . - . ID=Physo122677;biotype=protein_coding;external_name=estExt_Genewise1.C_1110020;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 45163 46337 . - . ID=Physo122677;Parent=Physo122677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 45163 45277 . - 0 ID=Physo122677;Parent=Physo122677;rank=3 scaffold_111 . exon 45163 45277 . - . ID=Physo122677.4;Parent=Physo122677;constitutive=1;ensembl_phase=2;rank=4 scaffold_111 . CDS 45354 45618 . - 0 ID=Physo122677;Parent=Physo122677;rank=2 scaffold_111 . exon 45354 45618 . - . ID=Physo122677.3;Parent=Physo122677;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_111 . CDS 45701 46115 . - 0 ID=Physo122677;Parent=Physo122677;rank=1 scaffold_111 . exon 45701 46133 . - . ID=Physo122677.2;Parent=Physo122677;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_111 . exon 46209 46337 . - . ID=Physo122677.1;Parent=Physo122677;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_111 . exon 41274 41296 . - . ID=Physo142274.1;Parent=Physo142274;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 ensembl protein_coding_gene 47482 49734 . + . ID=Physo142277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110018;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 47482 49734 . + . ID=Physo142277;Parent=Physo142277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 47482 49734 . + 0 ID=Physo142277;Parent=Physo142277;rank=1 scaffold_111 . exon 47482 49734 . + . ID=Physo142277.1;Parent=Physo142277;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 49898 54603 . - . ID=Physo142278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110019;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 49898 54603 . - . ID=Physo142278;Parent=Physo142278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 49898 49911 . - 0 ID=Physo142278;Parent=Physo142278;rank=3 scaffold_111 . exon 49898 49911 . - . ID=Physo142278.3;Parent=Physo142278;constitutive=1;ensembl_phase=1;rank=3 scaffold_111 . CDS 49992 51431 . - 0 ID=Physo142278;Parent=Physo142278;rank=2 scaffold_111 . exon 49992 51431 . - . ID=Physo142278.2;Parent=Physo142278;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 51633 54603 . - 0 ID=Physo142278;Parent=Physo142278;rank=1 scaffold_111 . exon 51633 54603 . - . ID=Physo142278.1;Parent=Physo142278;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . repeat_region 58274 58282 . ? . description=dust scaffold_111 . repeat_region 58550 58583 . ? . description=trf scaffold_111 . biological_region 60292 60294 0.999 - . logic_name=eponine scaffold_111 . repeat_region 62157 62215 . ? . description=dust scaffold_111 . repeat_region 62157 62215 . ? . description=trf scaffold_111 . repeat_region 62673 62721 . ? . description=trf scaffold_111 ensembl protein_coding_gene 67025 67168 . - . ID=Physo122678;biotype=protein_coding;external_name=estExt_Genewise1.C_1110021;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 67025 67168 . - . ID=Physo122678;Parent=Physo122678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 67025 67129 . - 0 ID=Physo122678;Parent=Physo122678;rank=1 scaffold_111 . exon 67025 67168 . - . ID=Physo122678.1;Parent=Physo122678;constitutive=1;ensembl_phase=-1;rank=1 scaffold_111 ensembl protein_coding_gene 60783 61211 . + . ID=Physo142279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110020;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 60783 61211 . + . ID=Physo142279;Parent=Physo142279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 60783 60946 . + 0 ID=Physo142279;Parent=Physo142279;rank=1 scaffold_111 . exon 60783 60946 . + . ID=Physo142279.1;Parent=Physo142279;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 . CDS 61052 61211 . + 0 ID=Physo142279;Parent=Physo142279;rank=2 scaffold_111 . exon 61052 61211 . + . ID=Physo142279.2;Parent=Physo142279;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 ensembl protein_coding_gene 69934 70518 . - . ID=Physo142280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110021;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 69934 70518 . - . ID=Physo142280;Parent=Physo142280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 69934 70518 . - 0 ID=Physo142280;Parent=Physo142280;rank=1 scaffold_111 . exon 69934 70518 . - . ID=Physo142280.1;Parent=Physo142280;constitutive=1;rank=1 scaffold_111 . repeat_region 79527 79607 . ? . description=dust scaffold_111 . repeat_region 79527 79607 . ? . description=trf scaffold_111 . repeat_region 79527 79607 . + . description=(TC)n scaffold_111 . repeat_region 80065 80113 . ? . description=trf scaffold_111 . biological_region 80907 80914 0.999 + . logic_name=eponine scaffold_111 . repeat_region 80921 80960 . ? . description=trf scaffold_111 . biological_region 81001 81002 0.999 - . logic_name=eponine scaffold_111 . repeat_region 81142 81185 . ? . description=trf scaffold_111 . repeat_region 83224 83292 . ? . description=trf scaffold_111 . repeat_region 84222 84397 . ? . description=trf scaffold_111 . biological_region 84403 84405 0.999 - . logic_name=eponine scaffold_111 . repeat_region 85947 85978 . ? . description=trf scaffold_111 ensembl protein_coding_gene 77698 78054 . - . ID=Physo142281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110022;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 77698 78054 . - . ID=Physo142281;Parent=Physo142281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 77698 78054 . - 0 ID=Physo142281;Parent=Physo142281;rank=1 scaffold_111 . exon 77698 78054 . - . ID=Physo142281.1;Parent=Physo142281;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 87205 87791 . - . ID=Physo142282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110023;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 87205 87791 . - . ID=Physo142282;Parent=Physo142282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 87205 87562 . - 0 ID=Physo142282;Parent=Physo142282;rank=2 scaffold_111 . exon 87205 87562 . - . ID=Physo142282.2;Parent=Physo142282;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 87781 87791 . - 0 ID=Physo142282;Parent=Physo142282;rank=1 scaffold_111 . exon 87781 87791 . - . ID=Physo142282.1;Parent=Physo142282;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 ensembl protein_coding_gene 90385 91125 . - . ID=Physo142283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110024;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 90385 91125 . - . ID=Physo142283;Parent=Physo142283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 90385 90713 . - 0 ID=Physo142283;Parent=Physo142283;rank=2 scaffold_111 . exon 90385 90713 . - . ID=Physo142283.2;Parent=Physo142283;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 90921 91125 . - 0 ID=Physo142283;Parent=Physo142283;rank=1 scaffold_111 . exon 90921 91125 . - . ID=Physo142283.1;Parent=Physo142283;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . biological_region 96961 96963 0.999 + . logic_name=eponine scaffold_111 . biological_region 99021 99026 0.999 + . logic_name=eponine scaffold_111 . biological_region 99088 99094 0.999 - . logic_name=eponine scaffold_111 . biological_region 99202 99212 0.999 - . logic_name=eponine scaffold_111 . biological_region 99235 99240 0.999 - . logic_name=eponine scaffold_111 . biological_region 99746 99750 0.999 - . logic_name=eponine scaffold_111 . biological_region 99753 99757 0.999 + . logic_name=eponine scaffold_111 . biological_region 99808 99812 0.999 - . logic_name=eponine scaffold_111 . biological_region 99851 99854 0.999 + . logic_name=eponine scaffold_111 . biological_region 99861 99865 0.999 + . logic_name=eponine scaffold_111 . biological_region 99923 99926 0.999 - . logic_name=eponine scaffold_111 . biological_region 100135 100138 0.999 + . logic_name=eponine scaffold_111 . biological_region 100171 100173 0.999 - . logic_name=eponine scaffold_111 . biological_region 100630 100632 0.999 - . logic_name=eponine scaffold_111 . biological_region 101140 101143 0.999 + . logic_name=eponine scaffold_111 . repeat_region 105027 105047 . ? . description=dust scaffold_111 ensembl protein_coding_gene 96672 97052 . + . ID=Physo142284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110025;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 96672 97052 . + . ID=Physo142284;Parent=Physo142284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 96672 97052 . + 0 ID=Physo142284;Parent=Physo142284;rank=1 scaffold_111 . exon 96672 97052 . + . ID=Physo142284.1;Parent=Physo142284;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 99578 100559 . - . ID=Physo142285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110026;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 99578 100559 . - . ID=Physo142285;Parent=Physo142285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 99578 99976 . - 0 ID=Physo142285;Parent=Physo142285;rank=3 scaffold_111 . exon 99578 99976 . - . ID=Physo142285.3;Parent=Physo142285;constitutive=1;rank=3 scaffold_111 . CDS 100064 100078 . - 0 ID=Physo142285;Parent=Physo142285;rank=2 scaffold_111 . exon 100064 100078 . - . ID=Physo142285.2;Parent=Physo142285;constitutive=1;rank=2 scaffold_111 . CDS 100371 100559 . - 0 ID=Physo142285;Parent=Physo142285;rank=1 scaffold_111 . exon 100371 100559 . - . ID=Physo142285.1;Parent=Physo142285;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 105057 106641 . + . ID=Physo142286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110027;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 105057 106641 . + . ID=Physo142286;Parent=Physo142286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 105057 105073 . + 0 ID=Physo142286;Parent=Physo142286;rank=1 scaffold_111 . exon 105057 105073 . + . ID=Physo142286.1;Parent=Physo142286;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 . CDS 105265 106231 . + 0 ID=Physo142286;Parent=Physo142286;rank=2 scaffold_111 . exon 105265 106231 . + . ID=Physo142286.2;Parent=Physo142286;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 106336 106641 . + 0 ID=Physo142286;Parent=Physo142286;rank=3 scaffold_111 . repeat_region 106765 106832 . ? . description=trf scaffold_111 . repeat_region 106766 106844 . ? . description=trf scaffold_111 . repeat_region 107854 107915 . ? . description=trf scaffold_111 . repeat_region 108760 108781 . ? . description=trf scaffold_111 . exon 106336 106641 . + . ID=Physo142286.3;Parent=Physo142286;constitutive=1;rank=3 scaffold_111 . repeat_region 116028 116035 . ? . description=dust scaffold_111 . repeat_region 116540 116589 . ? . description=dust scaffold_111 . repeat_region 116883 116890 . ? . description=dust scaffold_111 . biological_region 116897 116897 0.999 - . logic_name=eponine scaffold_111 . biological_region 116916 116918 0.999 - . logic_name=eponine scaffold_111 . repeat_region 116969 116976 . ? . description=dust scaffold_111 . biological_region 120096 120100 0.999 + . logic_name=eponine scaffold_111 . biological_region 120120 120122 0.999 - . logic_name=eponine scaffold_111 . biological_region 120176 120179 0.999 + . logic_name=eponine scaffold_111 . biological_region 120262 120265 0.999 + . logic_name=eponine scaffold_111 . biological_region 120290 120291 0.999 - . logic_name=eponine scaffold_111 . repeat_region 120849 123227 . + . description=GypsyPi-1c_I-int scaffold_111 . biological_region 124459 124467 0.999 - . logic_name=eponine scaffold_111 . biological_region 124496 124497 0.999 + . logic_name=eponine scaffold_111 ensembl protein_coding_gene 120186 123578 . + . ID=Physo142287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110028;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 120186 123578 . + . ID=Physo142287;Parent=Physo142287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 120186 120447 . + 0 ID=Physo142287;Parent=Physo142287;rank=1 scaffold_111 . exon 120186 120447 . + . ID=Physo142287.1;Parent=Physo142287;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . CDS 120710 121272 . + 0 ID=Physo142287;Parent=Physo142287;rank=2 scaffold_111 . exon 120710 121272 . + . ID=Physo142287.2;Parent=Physo142287;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 121353 121525 . + 0 ID=Physo142287;Parent=Physo142287;rank=3 scaffold_111 . exon 121353 121525 . + . ID=Physo142287.3;Parent=Physo142287;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_111 . CDS 121609 122638 . + 0 ID=Physo142287;Parent=Physo142287;rank=4 scaffold_111 . exon 121609 122638 . + . ID=Physo142287.4;Parent=Physo142287;constitutive=1;ensembl_phase=2;rank=4 scaffold_111 . CDS 122717 123531 . + 0 ID=Physo142287;Parent=Physo142287;rank=5 scaffold_111 . exon 122717 123531 . + . ID=Physo142287.5;Parent=Physo142287;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_111 . CDS 123572 123578 . + 0 ID=Physo142287;Parent=Physo142287;rank=6 scaffold_111 . exon 123572 123578 . + . ID=Physo142287.6;Parent=Physo142287;constitutive=1;ensembl_phase=2;rank=6 scaffold_111 . repeat_region 126664 126683 . ? . description=trf scaffold_111 . repeat_region 126813 126844 . ? . description=trf scaffold_111 ensembl protein_coding_gene 130950 131792 . - . ID=Physo142290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110031;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 130950 131792 . - . ID=Physo142290;Parent=Physo142290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 130950 131792 . - 0 ID=Physo142290;Parent=Physo142290;rank=1 scaffold_111 . exon 130950 131792 . - . ID=Physo142290.1;Parent=Physo142290;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 132077 132877 . + . ID=Physo142291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110032;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 132077 132877 . + . ID=Physo142291;Parent=Physo142291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 132077 132877 . + 0 ID=Physo142291;Parent=Physo142291;rank=1 scaffold_111 . exon 132077 132877 . + . ID=Physo142291.1;Parent=Physo142291;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 127429 128843 . + . ID=Physo158498;biotype=protein_coding;external_name=C_scaffold_111000005;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 127429 128843 . + . ID=Physo158498;Parent=Physo158498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 127429 127865 . + 0 ID=Physo158498;Parent=Physo158498;rank=1 scaffold_111 . exon 127429 127865 . + . ID=Physo158498.1;Parent=Physo158498;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 . CDS 127969 128154 . + 0 ID=Physo158498;Parent=Physo158498;rank=2 scaffold_111 . exon 127969 128154 . + . ID=Physo158498.2;Parent=Physo158498;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_111 . CDS 128206 128410 . + 0 ID=Physo158498;Parent=Physo158498;rank=3 scaffold_111 . exon 128206 128410 . + . ID=Physo158498.3;Parent=Physo158498;constitutive=1;ensembl_phase=2;rank=3 scaffold_111 . CDS 128717 128806 . + 0 ID=Physo158498;Parent=Physo158498;rank=4 scaffold_111 . exon 128717 128806 . + . ID=Physo158498.4;Parent=Physo158498;constitutive=1;rank=4 scaffold_111 . CDS 128835 128843 . + 0 ID=Physo158498;Parent=Physo158498;rank=5 scaffold_111 . exon 128835 128843 . + . ID=Physo158498.5;Parent=Physo158498;constitutive=1;rank=5 scaffold_111 ensembl protein_coding_gene 129045 130766 . - . ID=Physo158500;biotype=protein_coding;external_name=C_scaffold_111000007;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 129045 130766 . - . ID=Physo158500;Parent=Physo158500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 129045 129280 . - 0 ID=Physo158500;Parent=Physo158500;rank=7 scaffold_111 . exon 129045 129280 . - . ID=Physo158500.7;Parent=Physo158500;constitutive=1;ensembl_phase=1;rank=7 scaffold_111 . CDS 129314 129611 . - 0 ID=Physo158500;Parent=Physo158500;rank=6 scaffold_111 . exon 129314 129611 . - . ID=Physo158500.6;Parent=Physo158500;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_111 . CDS 129681 129749 . - 0 ID=Physo158500;Parent=Physo158500;rank=5 scaffold_111 . exon 129681 129749 . - . ID=Physo158500.5;Parent=Physo158500;constitutive=1;rank=5 scaffold_111 . CDS 129781 129811 . - 0 ID=Physo158500;Parent=Physo158500;rank=4 scaffold_111 . exon 129781 129811 . - . ID=Physo158500.4;Parent=Physo158500;constitutive=1;ensembl_phase=2;rank=4 scaffold_111 . CDS 129962 130054 . - 0 ID=Physo158500;Parent=Physo158500;rank=3 scaffold_111 . exon 129962 130054 . - . ID=Physo158500.3;Parent=Physo158500;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_111 . CDS 130117 130211 . - 0 ID=Physo158500;Parent=Physo158500;rank=2 scaffold_111 . exon 130117 130211 . - . ID=Physo158500.2;Parent=Physo158500;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_111 . CDS 130311 130766 . - 0 ID=Physo158500;Parent=Physo158500;rank=1 scaffold_111 . exon 130311 130766 . - . ID=Physo158500.1;Parent=Physo158500;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 132940 133495 . - . ID=Physo158503;biotype=protein_coding;external_name=C_scaffold_111000010;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 132940 133495 . - . ID=Physo158503;Parent=Physo158503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 132940 133207 . - 0 ID=Physo158503;Parent=Physo158503;rank=3 scaffold_111 . exon 132940 133207 . - . ID=Physo158503.3;Parent=Physo158503;constitutive=1;ensembl_phase=2;rank=3 scaffold_111 . CDS 133279 133360 . - 0 ID=Physo158503;Parent=Physo158503;rank=2 scaffold_111 . exon 133279 133360 . - . ID=Physo158503.2;Parent=Physo158503;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_111 . CDS 133441 133495 . - 0 ID=Physo158503;Parent=Physo158503;rank=1 scaffold_111 . exon 133441 133495 . - . ID=Physo158503.1;Parent=Physo158503;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . biological_region 140902 140904 0.999 + . logic_name=eponine scaffold_111 . biological_region 141029 141033 0.999 - . logic_name=eponine scaffold_111 . biological_region 141058 141063 0.999 - . logic_name=eponine scaffold_111 . biological_region 141085 141087 0.999 + . logic_name=eponine scaffold_111 . biological_region 141330 141332 0.999 - . logic_name=eponine scaffold_111 . biological_region 141530 141532 0.999 - . logic_name=eponine scaffold_111 . biological_region 141984 141984 0.999 + . logic_name=eponine scaffold_111 . biological_region 142198 142201 0.999 + . logic_name=eponine scaffold_111 . biological_region 142215 142217 0.999 - . logic_name=eponine scaffold_111 . biological_region 142562 142564 0.999 + . logic_name=eponine scaffold_111 . biological_region 142617 142619 0.999 + . logic_name=eponine scaffold_111 . biological_region 143555 143559 0.999 + . logic_name=eponine scaffold_111 . biological_region 143605 143609 0.999 - . logic_name=eponine scaffold_111 . biological_region 143624 143625 0.999 - . logic_name=eponine scaffold_111 . biological_region 143787 143790 0.999 + . logic_name=eponine scaffold_111 . biological_region 143841 143847 0.999 - . logic_name=eponine scaffold_111 . biological_region 143896 143900 0.999 + . logic_name=eponine scaffold_111 ensembl protein_coding_gene 140763 143215 . - . ID=Physo142292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110033;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 140763 143215 . - . ID=Physo142292;Parent=Physo142292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 140763 141697 . - . ID=Physo142292.2;Parent=Physo142292;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_111 . CDS 140832 141697 . - 0 ID=Physo142292;Parent=Physo142292;rank=2 scaffold_111 . CDS 141908 143054 . - 0 ID=Physo142292;Parent=Physo142292;rank=1 scaffold_111 . exon 141908 143215 . - . ID=Physo142292.1;Parent=Physo142292;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_111 ensembl protein_coding_gene 143427 145741 . + . ID=Physo142293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110034;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 143427 145741 . + . ID=Physo142293;Parent=Physo142293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 143427 143981 . + . ID=Physo142293.1;Parent=Physo142293;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_111 . CDS 143461 143981 . + 0 ID=Physo142293;Parent=Physo142293;rank=1 scaffold_111 . CDS 144306 144448 . + 0 ID=Physo142293;Parent=Physo142293;rank=2 scaffold_111 . CDS 144520 144791 . + 0 ID=Physo142293;Parent=Physo142293;rank=3 scaffold_111 . CDS 144871 144977 . + 0 ID=Physo142293;Parent=Physo142293;rank=4 scaffold_111 . CDS 145042 145741 . + 0 ID=Physo142293;Parent=Physo142293;rank=5 scaffold_111 . repeat_region 144172 144224 . ? . description=trf scaffold_111 . repeat_region 144177 144224 . ? . description=dust scaffold_111 . repeat_region 144179 144223 . ? . description=trf scaffold_111 . repeat_region 147266 147276 . ? . description=dust scaffold_111 . repeat_region 153288 153324 . ? . description=trf scaffold_111 . exon 144306 144448 . + . ID=Physo142293.2;Parent=Physo142293;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_111 . exon 144520 144791 . + . ID=Physo142293.3;Parent=Physo142293;constitutive=1;ensembl_phase=1;rank=3 scaffold_111 . exon 144871 144977 . + . ID=Physo142293.4;Parent=Physo142293;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_111 . exon 145042 145741 . + . ID=Physo142293.5;Parent=Physo142293;constitutive=1;ensembl_phase=2;rank=5 scaffold_111 ensembl protein_coding_gene 147446 149024 . + . ID=Physo142294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110035;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 147446 149024 . + . ID=Physo142294;Parent=Physo142294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 147446 147533 . + 0 ID=Physo142294;Parent=Physo142294;rank=1 scaffold_111 . exon 147446 147533 . + . ID=Physo142294.1;Parent=Physo142294;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . CDS 147635 147699 . + 0 ID=Physo142294;Parent=Physo142294;rank=2 scaffold_111 . exon 147635 147699 . + . ID=Physo142294.2;Parent=Physo142294;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 147771 147914 . + 0 ID=Physo142294;Parent=Physo142294;rank=3 scaffold_111 . exon 147771 147914 . + . ID=Physo142294.3;Parent=Physo142294;constitutive=1;rank=3 scaffold_111 . CDS 147994 148100 . + 0 ID=Physo142294;Parent=Physo142294;rank=4 scaffold_111 . exon 147994 148100 . + . ID=Physo142294.4;Parent=Physo142294;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_111 . CDS 148171 148507 . + 0 ID=Physo142294;Parent=Physo142294;rank=5 scaffold_111 . exon 148171 148507 . + . ID=Physo142294.5;Parent=Physo142294;constitutive=1;ensembl_phase=2;rank=5 scaffold_111 . CDS 148556 148820 . + 0 ID=Physo142294;Parent=Physo142294;rank=6 scaffold_111 . exon 148556 148820 . + . ID=Physo142294.6;Parent=Physo142294;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_111 . CDS 148921 149024 . + 0 ID=Physo142294;Parent=Physo142294;rank=7 scaffold_111 . exon 148921 149024 . + . ID=Physo142294.7;Parent=Physo142294;constitutive=1;ensembl_phase=1;rank=7 scaffold_111 ensembl protein_coding_gene 152663 156078 . - . ID=Physo142295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110036;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 152663 156078 . - . ID=Physo142295;Parent=Physo142295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 152663 153200 . - 0 ID=Physo142295;Parent=Physo142295;rank=10 scaffold_111 . exon 152663 153200 . - . ID=Physo142295.10;Parent=Physo142295;constitutive=1;ensembl_phase=2;rank=10 scaffold_111 . CDS 153325 153343 . - 0 ID=Physo142295;Parent=Physo142295;rank=9 scaffold_111 . exon 153325 153343 . - . ID=Physo142295.9;Parent=Physo142295;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_111 . CDS 153376 153555 . - 0 ID=Physo142295;Parent=Physo142295;rank=8 scaffold_111 . exon 153376 153555 . - . ID=Physo142295.8;Parent=Physo142295;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_111 . CDS 153663 154167 . - 0 ID=Physo142295;Parent=Physo142295;rank=7 scaffold_111 . exon 153663 154167 . - . ID=Physo142295.7;Parent=Physo142295;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_111 . CDS 154283 154506 . - 0 ID=Physo142295;Parent=Physo142295;rank=6 scaffold_111 . CDS 154580 154705 . - 0 ID=Physo142295;Parent=Physo142295;rank=5 scaffold_111 . CDS 154885 154906 . - 0 ID=Physo142295;Parent=Physo142295;rank=4 scaffold_111 . CDS 154955 155036 . - 0 ID=Physo142295;Parent=Physo142295;rank=3 scaffold_111 . CDS 155075 155580 . - 0 ID=Physo142295;Parent=Physo142295;rank=2 scaffold_111 . CDS 155899 156078 . - 0 ID=Physo142295;Parent=Physo142295;rank=1 scaffold_111 . biological_region 154042 154045 0.999 + . logic_name=eponine scaffold_111 . biological_region 154579 154583 0.999 + . logic_name=eponine scaffold_111 . biological_region 154626 154633 0.999 - . logic_name=eponine scaffold_111 . biological_region 154659 154664 0.999 - . logic_name=eponine scaffold_111 . biological_region 155552 155553 0.999 + . logic_name=eponine scaffold_111 . biological_region 155556 155562 0.999 - . logic_name=eponine scaffold_111 . biological_region 156215 156215 0.999 + . logic_name=eponine scaffold_111 . biological_region 159292 159295 0.999 + . logic_name=eponine scaffold_111 . biological_region 159637 159644 0.999 + . logic_name=eponine scaffold_111 . biological_region 160229 160236 0.999 + . logic_name=eponine scaffold_111 . biological_region 160287 160289 0.999 + . logic_name=eponine scaffold_111 . biological_region 160349 160351 0.999 - . logic_name=eponine scaffold_111 . biological_region 160417 160424 0.999 - . logic_name=eponine scaffold_111 . biological_region 160433 160434 0.999 + . logic_name=eponine scaffold_111 . biological_region 160472 160480 0.999 + . logic_name=eponine scaffold_111 . biological_region 160475 160479 0.999 - . logic_name=eponine scaffold_111 . biological_region 160998 161005 0.999 + . logic_name=eponine scaffold_111 . biological_region 161186 161191 0.999 + . logic_name=eponine scaffold_111 . biological_region 161255 161258 0.999 - . logic_name=eponine scaffold_111 . biological_region 161279 161281 0.999 + . logic_name=eponine scaffold_111 . biological_region 161388 161392 0.999 + . logic_name=eponine scaffold_111 . biological_region 161627 161631 0.999 + . logic_name=eponine scaffold_111 . biological_region 161660 161662 0.999 - . logic_name=eponine scaffold_111 . biological_region 161861 161863 0.999 + . logic_name=eponine scaffold_111 . biological_region 162603 162606 0.999 + . logic_name=eponine scaffold_111 . biological_region 162747 162751 0.999 + . logic_name=eponine scaffold_111 . exon 154283 154506 . - . ID=Physo142295.6;Parent=Physo142295;constitutive=1;ensembl_phase=1;rank=6 scaffold_111 . exon 154580 154705 . - . ID=Physo142295.5;Parent=Physo142295;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_111 . exon 154885 154906 . - . ID=Physo142295.4;Parent=Physo142295;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_111 . exon 154955 155036 . - . ID=Physo142295.3;Parent=Physo142295;constitutive=1;ensembl_phase=2;rank=3 scaffold_111 . exon 155075 155580 . - . ID=Physo142295.2;Parent=Physo142295;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_111 . exon 155899 156078 . - . ID=Physo142295.1;Parent=Physo142295;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 156082 158799 . - . ID=Physo142296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110037;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 156082 158799 . - . ID=Physo142296;Parent=Physo142296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 156082 156808 . - . ID=Physo142296.4;Parent=Physo142296;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_111 . CDS 156597 156808 . - 0 ID=Physo142296;Parent=Physo142296;rank=4 scaffold_111 . CDS 157222 158067 . - 0 ID=Physo142296;Parent=Physo142296;rank=3 scaffold_111 . exon 157222 158067 . - . ID=Physo142296.3;Parent=Physo142296;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_111 . CDS 158131 158396 . - 0 ID=Physo142296;Parent=Physo142296;rank=2 scaffold_111 . exon 158131 158396 . - . ID=Physo142296.2;Parent=Physo142296;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 158444 158799 . - 0 ID=Physo142296;Parent=Physo142296;rank=1 scaffold_111 . exon 158444 158799 . - . ID=Physo142296.1;Parent=Physo142296;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 ensembl protein_coding_gene 159532 161548 . - . ID=Physo142297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110038;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 159532 161548 . - . ID=Physo142297;Parent=Physo142297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 159532 160132 . - . ID=Physo142297.3;Parent=Physo142297;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_111 . CDS 159644 160132 . - 0 ID=Physo142297;Parent=Physo142297;rank=3 scaffold_111 . CDS 160947 160956 . - 0 ID=Physo142297;Parent=Physo142297;rank=2 scaffold_111 . exon 160947 160956 . - . ID=Physo142297.2;Parent=Physo142297;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 161015 161523 . - 0 ID=Physo142297;Parent=Physo142297;rank=1 scaffold_111 . exon 161015 161548 . - . ID=Physo142297.1;Parent=Physo142297;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_111 . repeat_region 166778 166797 . ? . description=trf scaffold_111 ensembl protein_coding_gene 167251 170005 . + . ID=Physo142298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110039;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 167251 170005 . + . ID=Physo142298;Parent=Physo142298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 167251 169947 . + 0 ID=Physo142298;Parent=Physo142298;rank=1 scaffold_111 . exon 167251 169947 . + . ID=Physo142298.1;Parent=Physo142298;constitutive=1;rank=1 scaffold_111 . CDS 169970 170005 . + 0 ID=Physo142298;Parent=Physo142298;rank=2 scaffold_111 . exon 169970 170005 . + . ID=Physo142298.2;Parent=Physo142298;constitutive=1;rank=2 scaffold_111 . repeat_region 178307 178317 . ? . description=dust scaffold_111 . biological_region 179641 179644 0.999 - . logic_name=eponine scaffold_111 . repeat_region 180842 180852 . ? . description=dust scaffold_111 . repeat_region 187216 187279 . ? . description=trf scaffold_111 ensembl protein_coding_gene 187412 189295 . - . ID=Physo142299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110040;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 187412 189295 . - . ID=Physo142299;Parent=Physo142299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 187412 189114 . - . ID=Physo142299.2;Parent=Physo142299;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_111 . CDS 187465 189114 . - 0 ID=Physo142299;Parent=Physo142299;rank=2 scaffold_111 . CDS 189209 189295 . - 0 ID=Physo142299;Parent=Physo142299;rank=1 scaffold_111 . exon 189209 189295 . - . ID=Physo142299.1;Parent=Physo142299;constitutive=1;rank=1 scaffold_111 . biological_region 195926 195927 0.999 - . logic_name=eponine scaffold_111 . biological_region 196187 196189 0.999 + . logic_name=eponine scaffold_111 . biological_region 198510 198514 0.999 - . logic_name=eponine scaffold_111 ensembl protein_coding_gene 195033 196009 . - . ID=Physo142300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110041;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 195033 196009 . - . ID=Physo142300;Parent=Physo142300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 195033 195046 . - 0 ID=Physo142300;Parent=Physo142300;rank=2 scaffold_111 . exon 195033 195046 . - . ID=Physo142300.2;Parent=Physo142300;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 195184 196009 . - 0 ID=Physo142300;Parent=Physo142300;rank=1 scaffold_111 . exon 195184 196009 . - . ID=Physo142300.1;Parent=Physo142300;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 ensembl protein_coding_gene 196281 197637 . + . ID=Physo142301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110042;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 196281 197637 . + . ID=Physo142301;Parent=Physo142301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 196281 196412 . + 0 ID=Physo142301;Parent=Physo142301;rank=1 scaffold_111 . exon 196281 196412 . + . ID=Physo142301.1;Parent=Physo142301;constitutive=1;rank=1 scaffold_111 . CDS 196508 196797 . + 0 ID=Physo142301;Parent=Physo142301;rank=2 scaffold_111 . exon 196508 196797 . + . ID=Physo142301.2;Parent=Physo142301;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_111 . CDS 196881 197637 . + 0 ID=Physo142301;Parent=Physo142301;rank=3 scaffold_111 . exon 196881 197637 . + . ID=Physo142301.3;Parent=Physo142301;constitutive=1;ensembl_phase=2;rank=3 scaffold_111 ensembl protein_coding_gene 197656 198976 . - . ID=Physo142302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110043;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 197656 198976 . - . ID=Physo142302;Parent=Physo142302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 197656 198020 . - . ID=Physo142302.4;Parent=Physo142302;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_111 . CDS 197745 198020 . - 0 ID=Physo142302;Parent=Physo142302;rank=4 scaffold_111 . CDS 198097 198605 . - 0 ID=Physo142302;Parent=Physo142302;rank=3 scaffold_111 . exon 198097 198605 . - . ID=Physo142302.3;Parent=Physo142302;constitutive=1;ensembl_phase=1;rank=3 scaffold_111 . CDS 198694 198821 . - 0 ID=Physo142302;Parent=Physo142302;rank=2 scaffold_111 . exon 198694 198821 . - . ID=Physo142302.2;Parent=Physo142302;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 198897 198976 . - 0 ID=Physo142302;Parent=Physo142302;rank=1 scaffold_111 . exon 198897 198976 . - . ID=Physo142302.1;Parent=Physo142302;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 ensembl protein_coding_gene 199411 200357 . + . ID=Physo142303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110044;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 199411 200357 . + . ID=Physo142303;Parent=Physo142303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 199411 199495 . + 0 ID=Physo142303;Parent=Physo142303;rank=1 scaffold_111 . exon 199411 199495 . + . ID=Physo142303.1;Parent=Physo142303;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . CDS 199663 200244 . + 0 ID=Physo142303;Parent=Physo142303;rank=2 scaffold_111 . exon 199663 200244 . + . ID=Physo142303.2;Parent=Physo142303;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 200341 200357 . + 0 ID=Physo142303;Parent=Physo142303;rank=3 scaffold_111 . exon 200341 200357 . + . ID=Physo142303.3;Parent=Physo142303;constitutive=1;ensembl_phase=1;rank=3 scaffold_111 ensembl protein_coding_gene 200381 201766 . - . ID=Physo142304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110045;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 200381 201766 . - . ID=Physo142304;Parent=Physo142304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 200381 201425 . - 0 ID=Physo142304;Parent=Physo142304;rank=2 scaffold_111 . exon 200381 201425 . - . ID=Physo142304.3;Parent=Physo142304;constitutive=1;ensembl_phase=2;rank=3 scaffold_111 . CDS 201504 201505 . - 0 ID=Physo142304;Parent=Physo142304;rank=1 scaffold_111 . exon 201504 201578 . - . ID=Physo142304.2;Parent=Physo142304;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_111 . exon 201658 201766 . - . ID=Physo142304.1;Parent=Physo142304;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_111 ensembl protein_coding_gene 205709 206417 . - . ID=Physo122684;biotype=protein_coding;external_name=estExt_Genewise1.C_1110027;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 205709 206417 . - . ID=Physo122684;Parent=Physo122684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 205709 206417 . - . ID=Physo122684.1;Parent=Physo122684;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_111 . CDS 205710 206012 . - 0 ID=Physo122684;Parent=Physo122684;rank=1 scaffold_111 ensembl protein_coding_gene 202291 203668 . + . ID=Physo142305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110046;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 202291 203668 . + . ID=Physo142305;Parent=Physo142305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 202291 202427 . + . ID=Physo142305.1;Parent=Physo142305;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_111 . CDS 202298 202427 . + 0 ID=Physo142305;Parent=Physo142305;rank=1 scaffold_111 . CDS 202543 203447 . + 0 ID=Physo142305;Parent=Physo142305;rank=2 scaffold_111 . exon 202543 203668 . + . ID=Physo142305.2;Parent=Physo142305;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_111 ensembl protein_coding_gene 203789 204737 . + . ID=Physo142306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110047;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 203789 204737 . + . ID=Physo142306;Parent=Physo142306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 203789 204092 . + 0 ID=Physo142306;Parent=Physo142306;rank=1 scaffold_111 . exon 203789 204092 . + . ID=Physo142306.1;Parent=Physo142306;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_111 . CDS 204160 204242 . + 0 ID=Physo142306;Parent=Physo142306;rank=2 scaffold_111 . exon 204160 204242 . + . ID=Physo142306.2;Parent=Physo142306;constitutive=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 204307 204382 . + 0 ID=Physo142306;Parent=Physo142306;rank=3 scaffold_111 . exon 204307 204382 . + . ID=Physo142306.3;Parent=Physo142306;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_111 . CDS 204460 204737 . + 0 ID=Physo142306;Parent=Physo142306;rank=4 scaffold_111 . exon 204460 204737 . + . ID=Physo142306.4;Parent=Physo142306;constitutive=1;ensembl_phase=1;rank=4 scaffold_111 . biological_region 213447 213449 0.999 - . logic_name=eponine scaffold_111 . biological_region 214038 214044 0.999 - . logic_name=eponine scaffold_111 . biological_region 214278 214283 0.999 + . logic_name=eponine scaffold_111 . repeat_region 215209 215315 . ? . description=trf scaffold_111 ensembl protein_coding_gene 219824 220136 . + . ID=Physo109463;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1110005;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 219824 220136 . + . ID=Physo109463;Parent=Physo109463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 219824 220101 . + 0 ID=Physo109463;Parent=Physo109463;rank=1 scaffold_111 . exon 219824 220101 . + . ID=Physo109463.1;Parent=Physo109463;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 . CDS 220121 220136 . + 0 ID=Physo109463;Parent=Physo109463;rank=2 scaffold_111 . exon 220121 220136 . + . ID=Physo109463.2;Parent=Physo109463;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 ensembl protein_coding_gene 220163 221092 . + . ID=Physo109464;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1110006;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 220163 221092 . + . ID=Physo109464;Parent=Physo109464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 220163 221092 . + 0 ID=Physo109464;Parent=Physo109464;rank=1 scaffold_111 . exon 220163 221092 . + . ID=Physo109464.1;Parent=Physo109464;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 212430 212950 . - . ID=Physo142307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110048;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 212430 212950 . - . ID=Physo142307;Parent=Physo142307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 212430 212703 . - 0 ID=Physo142307;Parent=Physo142307;rank=2 scaffold_111 . exon 212430 212703 . - . ID=Physo142307.2;Parent=Physo142307;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 212802 212950 . - 0 ID=Physo142307;Parent=Physo142307;rank=1 scaffold_111 . exon 212802 212950 . - . ID=Physo142307.1;Parent=Physo142307;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 ensembl protein_coding_gene 213224 214119 . + . ID=Physo142308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110049;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 213224 214119 . + . ID=Physo142308;Parent=Physo142308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 213224 213553 . + 0 ID=Physo142308;Parent=Physo142308;rank=1 scaffold_111 . exon 213224 213553 . + . ID=Physo142308.1;Parent=Physo142308;constitutive=1;rank=1 scaffold_111 . CDS 213635 214015 . + 0 ID=Physo142308;Parent=Physo142308;rank=2 scaffold_111 . exon 213635 214119 . + . ID=Physo142308.2;Parent=Physo142308;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_111 ensembl protein_coding_gene 227710 227973 . - . ID=Physo122691;biotype=protein_coding;external_name=estExt_Genewise1.C_1110034;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 227710 227973 . - . ID=Physo122691;Parent=Physo122691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . exon 227710 227973 . - . ID=Physo122691.1;Parent=Physo122691;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_111 . CDS 227770 227973 . - 0 ID=Physo122691;Parent=Physo122691;rank=1 scaffold_111 ensembl protein_coding_gene 221347 221928 . + . ID=Physo142312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110053;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 221347 221928 . + . ID=Physo142312;Parent=Physo142312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 221347 221928 . + 0 ID=Physo142312;Parent=Physo142312;rank=1 scaffold_111 . exon 221347 221928 . + . ID=Physo142312.1;Parent=Physo142312;constitutive=1;rank=1 scaffold_111 . repeat_region 230590 230645 . ? . description=trf scaffold_111 . repeat_region 230789 230939 . ? . description=trf scaffold_111 . repeat_region 231417 231470 . ? . description=dust scaffold_111 . biological_region 231770 231775 0.999 - . logic_name=eponine scaffold_111 . biological_region 231830 231834 0.999 - . logic_name=eponine scaffold_111 . biological_region 231867 231868 0.999 + . logic_name=eponine scaffold_111 . repeat_region 234999 235330 . ? . description=dust scaffold_111 . biological_region 238151 238153 0.999 - . logic_name=eponine scaffold_111 . biological_region 238639 238647 0.999 + . logic_name=eponine scaffold_111 ensembl protein_coding_gene 231297 232406 . - . ID=Physo142314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110055;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 231297 232406 . - . ID=Physo142314;Parent=Physo142314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 231297 231686 . - 0 ID=Physo142314;Parent=Physo142314;rank=3 scaffold_111 . exon 231297 231686 . - . ID=Physo142314.3;Parent=Physo142314;constitutive=1;rank=3 scaffold_111 . CDS 231709 231883 . - 0 ID=Physo142314;Parent=Physo142314;rank=2 scaffold_111 . exon 231709 231883 . - . ID=Physo142314.2;Parent=Physo142314;constitutive=1;ensembl_phase=2;rank=2 scaffold_111 . CDS 232003 232406 . - 0 ID=Physo142314;Parent=Physo142314;rank=1 scaffold_111 . exon 232003 232406 . - . ID=Physo142314.1;Parent=Physo142314;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_111 ensembl protein_coding_gene 234164 234586 . + . ID=Physo142315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110056;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 234164 234586 . + . ID=Physo142315;Parent=Physo142315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 234164 234586 . + 0 ID=Physo142315;Parent=Physo142315;rank=1 scaffold_111 . exon 234164 234586 . + . ID=Physo142315.1;Parent=Physo142315;constitutive=1;rank=1 scaffold_111 ensembl protein_coding_gene 235466 238890 . - . ID=Physo142316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1110057;logic_name=jgi_physo1_1 scaffold_111 ensembl transcript 235466 238890 . - . ID=Physo142316;Parent=Physo142316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_111 . CDS 235466 235512 . - 0 ID=Physo142316;Parent=Physo142316;rank=5 scaffold_111 . exon 235466 235512 . - . ID=Physo142316.5;Parent=Physo142316;constitutive=1;ensembl_phase=1;rank=5 scaffold_111 . CDS 235538 236399 . - 0 ID=Physo142316;Parent=Physo142316;rank=4 scaffold_111 . exon 235538 236399 . - . ID=Physo142316.4;Parent=Physo142316;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_111 . CDS 236621 236664 . - 0 ID=Physo142316;Parent=Physo142316;rank=3 scaffold_111 . exon 236621 236664 . - . ID=Physo142316.3;Parent=Physo142316;constitutive=1;ensembl_phase=1;rank=3 scaffold_111 . CDS 236804 238759 . - 0 ID=Physo142316;Parent=Physo142316;rank=2 scaffold_111 . exon 236804 238759 . - . ID=Physo142316.2;Parent=Physo142316;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_111 . CDS 238854 238890 . - 0 ID=Physo142316;Parent=Physo142316;rank=1 scaffold_111 . exon 238854 238890 . - . ID=Physo142316.1;Parent=Physo142316;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_110 1 247306 scaffold_110 . repeat_region 1197 1217 . ? . description=trf scaffold_110 . biological_region 1342 1345 0.999 - . logic_name=eponine scaffold_110 . biological_region 1366 1368 0.999 - . logic_name=eponine scaffold_110 . biological_region 1445 1451 0.999 + . logic_name=eponine scaffold_110 . biological_region 1482 1487 0.999 + . logic_name=eponine scaffold_110 . biological_region 1638 1640 0.999 + . logic_name=eponine scaffold_110 . repeat_region 2636 18802 . ? . description=dust scaffold_110 ensembl protein_coding_gene 240 2540 . + . ID=Physo142207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100001;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 240 2540 . + . ID=Physo142207;Parent=Physo142207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 240 266 . + 0 ID=Physo142207;Parent=Physo142207;rank=1 scaffold_110 . exon 240 266 . + . ID=Physo142207.1;Parent=Physo142207;constitutive=1;rank=1 scaffold_110 . CDS 434 459 . + 0 ID=Physo142207;Parent=Physo142207;rank=2 scaffold_110 . exon 434 459 . + . ID=Physo142207.2;Parent=Physo142207;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_110 . CDS 600 753 . + 0 ID=Physo142207;Parent=Physo142207;rank=3 scaffold_110 . exon 600 753 . + . ID=Physo142207.3;Parent=Physo142207;constitutive=1;ensembl_phase=2;rank=3 scaffold_110 . CDS 774 1136 . + 0 ID=Physo142207;Parent=Physo142207;rank=4 scaffold_110 . exon 774 1136 . + . ID=Physo142207.4;Parent=Physo142207;constitutive=1;rank=4 scaffold_110 . CDS 1190 1314 . + 0 ID=Physo142207;Parent=Physo142207;rank=5 scaffold_110 . exon 1190 1314 . + . ID=Physo142207.5;Parent=Physo142207;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_110 . CDS 1415 1616 . + 0 ID=Physo142207;Parent=Physo142207;rank=6 scaffold_110 . exon 1415 1616 . + . ID=Physo142207.6;Parent=Physo142207;constitutive=1;ensembl_phase=2;rank=6 scaffold_110 . CDS 1708 2169 . + 0 ID=Physo142207;Parent=Physo142207;rank=7 scaffold_110 . exon 1708 2540 . + . ID=Physo142207.7;Parent=Physo142207;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_110 . repeat_region 25918 25973 . ? . description=trf scaffold_110 . repeat_region 26010 26092 . ? . description=trf scaffold_110 . biological_region 26331 26334 0.999 - . logic_name=eponine scaffold_110 . repeat_region 26959 26978 . ? . description=trf scaffold_110 . repeat_region 29148 29162 . ? . description=dust scaffold_110 . biological_region 29198 29203 0.999 + . logic_name=eponine scaffold_110 ensembl protein_coding_gene 23281 24450 . + . ID=Physo142208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100002;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 23281 24450 . + . ID=Physo142208;Parent=Physo142208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 23281 24450 . + 0 ID=Physo142208;Parent=Physo142208;rank=1 scaffold_110 . exon 23281 24450 . + . ID=Physo142208.1;Parent=Physo142208;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 25492 26629 . + . ID=Physo142209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100003;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 25492 26629 . + . ID=Physo142209;Parent=Physo142209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 25492 25546 . + 0 ID=Physo142209;Parent=Physo142209;rank=1 scaffold_110 . exon 25492 25546 . + . ID=Physo142209.1;Parent=Physo142209;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 . CDS 25781 26398 . + 0 ID=Physo142209;Parent=Physo142209;rank=2 scaffold_110 . exon 25781 26398 . + . ID=Physo142209.2;Parent=Physo142209;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 26493 26629 . + 0 ID=Physo142209;Parent=Physo142209;rank=3 scaffold_110 . exon 26493 26629 . + . ID=Physo142209.3;Parent=Physo142209;constitutive=1;ensembl_phase=1;rank=3 scaffold_110 ensembl protein_coding_gene 35493 38667 . + . ID=Physo142210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100004;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 35493 38667 . + . ID=Physo142210;Parent=Physo142210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 35493 35580 . + 0 ID=Physo142210;Parent=Physo142210;rank=1 scaffold_110 . exon 35493 35580 . + . ID=Physo142210.1;Parent=Physo142210;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 . CDS 35829 37006 . + 0 ID=Physo142210;Parent=Physo142210;rank=2 scaffold_110 . exon 35829 37006 . + . ID=Physo142210.2;Parent=Physo142210;constitutive=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 37172 37326 . + 0 ID=Physo142210;Parent=Physo142210;rank=3 scaffold_110 . exon 37172 37326 . + . ID=Physo142210.3;Parent=Physo142210;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_110 . CDS 37397 37857 . + 0 ID=Physo142210;Parent=Physo142210;rank=4 scaffold_110 . exon 37397 37857 . + . ID=Physo142210.4;Parent=Physo142210;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_110 . CDS 37884 38077 . + 0 ID=Physo142210;Parent=Physo142210;rank=5 scaffold_110 . exon 37884 38077 . + . ID=Physo142210.5;Parent=Physo142210;constitutive=1;ensembl_phase=1;rank=5 scaffold_110 . CDS 38114 38281 . + 0 ID=Physo142210;Parent=Physo142210;rank=6 scaffold_110 . exon 38114 38281 . + . ID=Physo142210.6;Parent=Physo142210;constitutive=1;rank=6 scaffold_110 . CDS 38332 38427 . + 0 ID=Physo142210;Parent=Physo142210;rank=7 scaffold_110 . exon 38332 38454 . + . ID=Physo142210.7;Parent=Physo142210;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_110 . exon 38474 38667 . + . ID=Physo142210.8;Parent=Physo142210;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=8 scaffold_110 ensembl protein_coding_gene 39383 40188 . + . ID=Physo142211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100005;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 39383 40188 . + . ID=Physo142211;Parent=Physo142211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 39383 39759 . + 0 ID=Physo142211;Parent=Physo142211;rank=1 scaffold_110 . exon 39383 39759 . + . ID=Physo142211.1;Parent=Physo142211;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 . CDS 39864 40188 . + 0 ID=Physo142211;Parent=Physo142211;rank=2 scaffold_110 . biological_region 39699 39699 0.999 + . logic_name=eponine scaffold_110 . biological_region 39759 39760 0.999 + . logic_name=eponine scaffold_110 . biological_region 40085 40091 0.999 - . logic_name=eponine scaffold_110 . repeat_region 40218 40227 . ? . description=dust scaffold_110 . repeat_region 41150 41206 . ? . description=dust scaffold_110 . repeat_region 41150 41206 . ? . description=trf scaffold_110 . repeat_region 41520 41561 . ? . description=trf scaffold_110 . biological_region 42511 42515 0.999 + . logic_name=eponine scaffold_110 . biological_region 42751 42753 0.999 + . logic_name=eponine scaffold_110 . biological_region 42984 42985 0.999 + . logic_name=eponine scaffold_110 . biological_region 43077 43079 0.999 + . logic_name=eponine scaffold_110 . biological_region 46969 46978 0.999 + . logic_name=eponine scaffold_110 . biological_region 46993 46996 0.999 + . logic_name=eponine scaffold_110 . biological_region 47068 47070 0.999 - . logic_name=eponine scaffold_110 . repeat_region 47618 47733 . - . description=GypsyPi-1c_I-int scaffold_110 . repeat_region 48076 48109 . ? . description=dust scaffold_110 . repeat_region 48076 48109 . ? . description=trf scaffold_110 . repeat_region 48259 50568 . - . description=GypsyPi-1c_I-int scaffold_110 . biological_region 49460 49462 0.999 + . logic_name=eponine scaffold_110 . exon 39864 40188 . + . ID=Physo142211.2;Parent=Physo142211;constitutive=1;ensembl_phase=2;rank=2 scaffold_110 ensembl protein_coding_gene 42456 43229 . + . ID=Physo142212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100006;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 42456 43229 . + . ID=Physo142212;Parent=Physo142212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 42456 42484 . + 0 ID=Physo142212;Parent=Physo142212;rank=1 scaffold_110 . exon 42456 42484 . + . ID=Physo142212.1;Parent=Physo142212;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 . CDS 42527 43229 . + 0 ID=Physo142212;Parent=Physo142212;rank=2 scaffold_110 . exon 42527 43229 . + . ID=Physo142212.2;Parent=Physo142212;constitutive=1;ensembl_phase=2;rank=2 scaffold_110 ensembl protein_coding_gene 43902 45606 . - . ID=Physo142213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100007;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 43902 45606 . - . ID=Physo142213;Parent=Physo142213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 43902 44486 . - 0 ID=Physo142213;Parent=Physo142213;rank=2 scaffold_110 . exon 43902 44486 . - . ID=Physo142213.2;Parent=Physo142213;constitutive=1;rank=2 scaffold_110 . CDS 45205 45606 . - 0 ID=Physo142213;Parent=Physo142213;rank=1 scaffold_110 . exon 45205 45606 . - . ID=Physo142213.1;Parent=Physo142213;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 47854 52022 . - . ID=Physo142214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100008;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 47854 52022 . - . ID=Physo142214;Parent=Physo142214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 47854 47860 . - 0 ID=Physo142214;Parent=Physo142214;rank=8 scaffold_110 . exon 47854 47860 . - . ID=Physo142214.8;Parent=Physo142214;constitutive=1;ensembl_phase=2;rank=8 scaffold_110 . CDS 47901 48216 . - 0 ID=Physo142214;Parent=Physo142214;rank=7 scaffold_110 . exon 47901 48216 . - . ID=Physo142214.7;Parent=Physo142214;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_110 . CDS 48281 48323 . - 0 ID=Physo142214;Parent=Physo142214;rank=6 scaffold_110 . exon 48281 48323 . - . ID=Physo142214.6;Parent=Physo142214;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_110 . CDS 48371 48490 . - 0 ID=Physo142214;Parent=Physo142214;rank=5 scaffold_110 . exon 48371 48490 . - . ID=Physo142214.5;Parent=Physo142214;constitutive=1;rank=5 scaffold_110 . CDS 48688 49513 . - 0 ID=Physo142214;Parent=Physo142214;rank=4 scaffold_110 . exon 48688 49513 . - . ID=Physo142214.4;Parent=Physo142214;constitutive=1;ensembl_phase=2;rank=4 scaffold_110 . CDS 49557 50179 . - 0 ID=Physo142214;Parent=Physo142214;rank=3 scaffold_110 . CDS 50387 50455 . - 0 ID=Physo142214;Parent=Physo142214;rank=2 scaffold_110 . CDS 50475 52022 . - 0 ID=Physo142214;Parent=Physo142214;rank=1 scaffold_110 . exon 49557 50179 . - . ID=Physo142214.3;Parent=Physo142214;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_110 . exon 50387 50455 . - . ID=Physo142214.2;Parent=Physo142214;constitutive=1;rank=2 scaffold_110 . exon 50475 52022 . - . ID=Physo142214.1;Parent=Physo142214;constitutive=1;rank=1 scaffold_110 . repeat_region 65802 65891 . ? . description=trf scaffold_110 . repeat_region 65996 66004 . ? . description=dust scaffold_110 . repeat_region 66308 66316 . ? . description=dust scaffold_110 . biological_region 67069 67070 0.999 + . logic_name=eponine scaffold_110 . biological_region 68479 68481 0.999 - . logic_name=eponine scaffold_110 . repeat_region 68513 68526 . ? . description=dust scaffold_110 . repeat_region 68532 68555 . ? . description=trf scaffold_110 . repeat_region 68708 68743 . ? . description=trf scaffold_110 . repeat_region 69043 69050 . ? . description=dust scaffold_110 ensembl protein_coding_gene 62857 63792 . + . ID=Physo142215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100009;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 62857 63792 . + . ID=Physo142215;Parent=Physo142215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 62857 63792 . + 0 ID=Physo142215;Parent=Physo142215;rank=1 scaffold_110 . exon 62857 63792 . + . ID=Physo142215.1;Parent=Physo142215;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 66800 67994 . - . ID=Physo142217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100011;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 66800 67994 . - . ID=Physo142217;Parent=Physo142217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 66800 67114 . - 0 ID=Physo142217;Parent=Physo142217;rank=3 scaffold_110 . exon 66800 67114 . - . ID=Physo142217.3;Parent=Physo142217;constitutive=1;rank=3 scaffold_110 . CDS 67135 67305 . - 0 ID=Physo142217;Parent=Physo142217;rank=2 scaffold_110 . exon 67135 67305 . - . ID=Physo142217.2;Parent=Physo142217;constitutive=1;rank=2 scaffold_110 . CDS 67353 67994 . - 0 ID=Physo142217;Parent=Physo142217;rank=1 scaffold_110 . exon 67353 67994 . - . ID=Physo142217.1;Parent=Physo142217;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 63955 64801 . + . ID=Physo158491;biotype=protein_coding;external_name=C_scaffold_110000002;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 63955 64801 . + . ID=Physo158491;Parent=Physo158491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 63955 64036 . + 0 ID=Physo158491;Parent=Physo158491;rank=1 scaffold_110 . exon 63955 64036 . + . ID=Physo158491.1;Parent=Physo158491;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 . CDS 64070 64204 . + 0 ID=Physo158491;Parent=Physo158491;rank=2 scaffold_110 . exon 64070 64204 . + . ID=Physo158491.2;Parent=Physo158491;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 64270 64341 . + 0 ID=Physo158491;Parent=Physo158491;rank=3 scaffold_110 . exon 64270 64341 . + . ID=Physo158491.3;Parent=Physo158491;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_110 . CDS 64414 64591 . + 0 ID=Physo158491;Parent=Physo158491;rank=4 scaffold_110 . exon 64414 64591 . + . ID=Physo158491.4;Parent=Physo158491;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_110 . CDS 64663 64801 . + 0 ID=Physo158491;Parent=Physo158491;rank=5 scaffold_110 . exon 64663 64801 . + . ID=Physo158491.5;Parent=Physo158491;constitutive=1;ensembl_phase=2;rank=5 scaffold_110 . repeat_region 74715 74855 . + . description=(CGAGT)n scaffold_110 ensembl protein_coding_gene 76951 82942 . - . ID=Physo142218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100012;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 76951 82942 . - . ID=Physo142218;Parent=Physo142218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 76951 77006 . - 0 ID=Physo142218;Parent=Physo142218;rank=20 scaffold_110 . exon 76951 77006 . - . ID=Physo142218.20;Parent=Physo142218;constitutive=1;ensembl_phase=1;rank=20 scaffold_110 . CDS 77030 77235 . - 0 ID=Physo142218;Parent=Physo142218;rank=19 scaffold_110 . exon 77030 77235 . - . ID=Physo142218.19;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=19 scaffold_110 . CDS 77419 78037 . - 0 ID=Physo142218;Parent=Physo142218;rank=18 scaffold_110 . exon 77419 78037 . - . ID=Physo142218.18;Parent=Physo142218;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=18 scaffold_110 . CDS 78472 78676 . - 0 ID=Physo142218;Parent=Physo142218;rank=17 scaffold_110 . exon 78472 78676 . - . ID=Physo142218.17;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_110 . CDS 78707 78762 . - 0 ID=Physo142218;Parent=Physo142218;rank=16 scaffold_110 . exon 78707 78762 . - . ID=Physo142218.16;Parent=Physo142218;constitutive=1;ensembl_phase=1;rank=16 scaffold_110 . CDS 78901 79249 . - 0 ID=Physo142218;Parent=Physo142218;rank=15 scaffold_110 . exon 78901 79249 . - . ID=Physo142218.15;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_110 . CDS 79310 79422 . - 0 ID=Physo142218;Parent=Physo142218;rank=14 scaffold_110 . CDS 79445 79726 . - 0 ID=Physo142218;Parent=Physo142218;rank=13 scaffold_110 . CDS 79828 79921 . - 0 ID=Physo142218;Parent=Physo142218;rank=12 scaffold_110 . CDS 80005 80172 . - 0 ID=Physo142218;Parent=Physo142218;rank=11 scaffold_110 . CDS 80199 80425 . - 0 ID=Physo142218;Parent=Physo142218;rank=10 scaffold_110 . CDS 80482 80592 . - 0 ID=Physo142218;Parent=Physo142218;rank=9 scaffold_110 . CDS 80701 80745 . - 0 ID=Physo142218;Parent=Physo142218;rank=8 scaffold_110 . CDS 81268 81342 . - 0 ID=Physo142218;Parent=Physo142218;rank=7 scaffold_110 . CDS 81447 81754 . - 0 ID=Physo142218;Parent=Physo142218;rank=6 scaffold_110 . CDS 81828 82054 . - 0 ID=Physo142218;Parent=Physo142218;rank=5 scaffold_110 . CDS 82094 82195 . - 0 ID=Physo142218;Parent=Physo142218;rank=4 scaffold_110 . CDS 82278 82750 . - 0 ID=Physo142218;Parent=Physo142218;rank=3 scaffold_110 . CDS 82801 82807 . - 0 ID=Physo142218;Parent=Physo142218;rank=2 scaffold_110 . CDS 82865 82942 . - 0 ID=Physo142218;Parent=Physo142218;rank=1 scaffold_110 . biological_region 80250 80256 0.999 + . logic_name=eponine scaffold_110 . biological_region 80447 80449 0.999 - . logic_name=eponine scaffold_110 . biological_region 80540 80542 0.999 - . logic_name=eponine scaffold_110 . biological_region 81218 81222 0.999 - . logic_name=eponine scaffold_110 . biological_region 81664 81667 0.999 - . logic_name=eponine scaffold_110 . biological_region 82612 82614 0.999 - . logic_name=eponine scaffold_110 . biological_region 82618 82620 0.999 + . logic_name=eponine scaffold_110 . biological_region 82718 82723 0.999 - . logic_name=eponine scaffold_110 . repeat_region 85612 85831 . ? . description=trf scaffold_110 . repeat_region 88659 88704 . ? . description=trf scaffold_110 . repeat_region 88666 88722 . ? . description=trf scaffold_110 . repeat_region 88983 89168 . ? . description=trf scaffold_110 . exon 79310 79422 . - . ID=Physo142218.14;Parent=Physo142218;constitutive=1;ensembl_phase=1;rank=14 scaffold_110 . exon 79445 79726 . - . ID=Physo142218.13;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_110 . exon 79828 79921 . - . ID=Physo142218.12;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_110 . exon 80005 80172 . - . ID=Physo142218.11;Parent=Physo142218;constitutive=1;rank=11 scaffold_110 . exon 80199 80425 . - . ID=Physo142218.10;Parent=Physo142218;constitutive=1;ensembl_phase=1;rank=10 scaffold_110 . exon 80482 80592 . - . ID=Physo142218.9;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_110 . exon 80701 80745 . - . ID=Physo142218.8;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_110 . exon 81268 81342 . - . ID=Physo142218.7;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_110 . exon 81447 81754 . - . ID=Physo142218.6;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_110 . exon 81828 82054 . - . ID=Physo142218.5;Parent=Physo142218;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_110 . exon 82094 82195 . - . ID=Physo142218.4;Parent=Physo142218;constitutive=1;rank=4 scaffold_110 . exon 82278 82750 . - . ID=Physo142218.3;Parent=Physo142218;constitutive=1;ensembl_phase=1;rank=3 scaffold_110 . exon 82801 82807 . - . ID=Physo142218.2;Parent=Physo142218;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_110 . exon 82865 82942 . - . ID=Physo142218.1;Parent=Physo142218;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 85289 87328 . + . ID=Physo142219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100013;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 85289 87328 . + . ID=Physo142219;Parent=Physo142219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 85289 87328 . + 0 ID=Physo142219;Parent=Physo142219;rank=1 scaffold_110 . exon 85289 87328 . + . ID=Physo142219.1;Parent=Physo142219;constitutive=1;rank=1 scaffold_110 . repeat_region 89773 89785 . ? . description=dust scaffold_110 . repeat_region 92725 92781 . + . description=GypsyPi-1c_I-int scaffold_110 . repeat_region 95291 95298 . ? . description=dust scaffold_110 . repeat_region 96767 96783 . ? . description=dust scaffold_110 ensembl protein_coding_gene 90074 91171 . + . ID=Physo142220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100014;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 90074 91171 . + . ID=Physo142220;Parent=Physo142220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 90074 91171 . + 0 ID=Physo142220;Parent=Physo142220;rank=1 scaffold_110 . exon 90074 91171 . + . ID=Physo142220.1;Parent=Physo142220;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 97410 98300 . + . ID=Physo142221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100015;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 97410 98300 . + . ID=Physo142221;Parent=Physo142221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 97410 98300 . + 0 ID=Physo142221;Parent=Physo142221;rank=1 scaffold_110 . exon 97410 98300 . + . ID=Physo142221.1;Parent=Physo142221;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 100639 101448 . - . ID=Physo109454;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1100001;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 100639 101448 . - . ID=Physo109454;Parent=Physo109454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 100639 100737 . - 0 ID=Physo109454;Parent=Physo109454;rank=2 scaffold_110 . exon 100639 100737 . - . ID=Physo109454.2;Parent=Physo109454;constitutive=1;rank=2 scaffold_110 . CDS 100765 101448 . - 0 ID=Physo109454;Parent=Physo109454;rank=1 scaffold_110 . exon 100765 101448 . - . ID=Physo109454.1;Parent=Physo109454;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 99549 100439 . + . ID=Physo142222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100016;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 99549 100439 . + . ID=Physo142222;Parent=Physo142222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 99549 100439 . + 0 ID=Physo142222;Parent=Physo142222;rank=1 scaffold_110 . exon 99549 100439 . + . ID=Physo142222.1;Parent=Physo142222;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 102339 103024 . - . ID=Physo142224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100018;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 102339 103024 . - . ID=Physo142224;Parent=Physo142224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 102339 102602 . - 0 ID=Physo142224;Parent=Physo142224;rank=2 scaffold_110 . exon 102339 102602 . - . ID=Physo142224.2;Parent=Physo142224;constitutive=1;rank=2 scaffold_110 . CDS 102947 103024 . - 0 ID=Physo142224;Parent=Physo142224;rank=1 scaffold_110 . exon 102947 103024 . - . ID=Physo142224.1;Parent=Physo142224;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 108257 109072 . - . ID=Physo142225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100019;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 108257 109072 . - . ID=Physo142225;Parent=Physo142225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 108257 108847 . - 0 ID=Physo142225;Parent=Physo142225;rank=2 scaffold_110 . exon 108257 108847 . - . ID=Physo142225.2;Parent=Physo142225;constitutive=1;rank=2 scaffold_110 . CDS 108974 109072 . - 0 ID=Physo142225;Parent=Physo142225;rank=1 scaffold_110 . biological_region 110123 110129 0.999 + . logic_name=eponine scaffold_110 . biological_region 110152 110154 0.999 - . logic_name=eponine scaffold_110 . biological_region 113082 113083 0.999 - . logic_name=eponine scaffold_110 . biological_region 113088 113088 0.999 + . logic_name=eponine scaffold_110 . biological_region 114018 114026 0.999 + . logic_name=eponine scaffold_110 . biological_region 114064 114065 0.999 - . logic_name=eponine scaffold_110 . biological_region 114441 114444 0.999 + . logic_name=eponine scaffold_110 . biological_region 115972 115975 0.999 + . logic_name=eponine scaffold_110 . biological_region 116183 116185 0.999 + . logic_name=eponine scaffold_110 . biological_region 117419 117420 0.999 + . logic_name=eponine scaffold_110 . biological_region 117806 117808 0.999 + . logic_name=eponine scaffold_110 ensembl protein_coding_gene 117095 118860 . + . ID=Physo109455;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1100002;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 117095 118860 . + . ID=Physo109455;Parent=Physo109455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 117095 117163 . + 0 ID=Physo109455;Parent=Physo109455;rank=1 scaffold_110 . exon 117095 117163 . + . ID=Physo109455.1;Parent=Physo109455;constitutive=1;rank=1 scaffold_110 . CDS 117300 117507 . + 0 ID=Physo109455;Parent=Physo109455;rank=2 scaffold_110 . exon 117300 117507 . + . ID=Physo109455.2;Parent=Physo109455;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_110 . CDS 117582 117641 . + 0 ID=Physo109455;Parent=Physo109455;rank=3 scaffold_110 . exon 117582 117641 . + . ID=Physo109455.3;Parent=Physo109455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_110 . CDS 117728 118860 . + 0 ID=Physo109455;Parent=Physo109455;rank=4 scaffold_110 . exon 117728 118860 . + . ID=Physo109455.4;Parent=Physo109455;constitutive=1;ensembl_phase=1;rank=4 scaffold_110 . exon 108974 109072 . - . ID=Physo142225.1;Parent=Physo142225;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 110347 111600 . + . ID=Physo142226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100020;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 110347 111600 . + . ID=Physo142226;Parent=Physo142226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 110347 111600 . + 0 ID=Physo142226;Parent=Physo142226;rank=1 scaffold_110 . exon 110347 111600 . + . ID=Physo142226.1;Parent=Physo142226;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 113158 114871 . + . ID=Physo142227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100021;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 113158 114871 . + . ID=Physo142227;Parent=Physo142227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . exon 113158 113300 . + . ID=Physo142227.1;Parent=Physo142227;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_110 . exon 113516 114871 . + . ID=Physo142227.2;Parent=Physo142227;constitutive=1;ensembl_phase=-1;rank=2 scaffold_110 . CDS 113603 114871 . + 0 ID=Physo142227;Parent=Physo142227;rank=1 scaffold_110 ensembl protein_coding_gene 114916 116679 . - . ID=Physo142228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100022;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 114916 116679 . - . ID=Physo142228;Parent=Physo142228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . exon 114916 116479 . - . ID=Physo142228.2;Parent=Physo142228;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_110 . CDS 115094 116479 . - 0 ID=Physo142228;Parent=Physo142228;rank=2 scaffold_110 . CDS 116619 116627 . - 0 ID=Physo142228;Parent=Physo142228;rank=1 scaffold_110 . exon 116619 116679 . - . ID=Physo142228.1;Parent=Physo142228;constitutive=1;ensembl_phase=-1;rank=1 scaffold_110 . repeat_region 127116 127123 . ? . description=dust scaffold_110 ensembl protein_coding_gene 119122 121179 . + . ID=Physo142230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100024;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 119122 121179 . + . ID=Physo142230;Parent=Physo142230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . exon 119122 121179 . + . ID=Physo142230.1;Parent=Physo142230;constitutive=1;ensembl_phase=-1;rank=1 scaffold_110 . CDS 119425 121179 . + 0 ID=Physo142230;Parent=Physo142230;rank=1 scaffold_110 ensembl protein_coding_gene 122313 123191 . + . ID=Physo142231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100025;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 122313 123191 . + . ID=Physo142231;Parent=Physo142231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 122313 123191 . + 0 ID=Physo142231;Parent=Physo142231;rank=1 scaffold_110 . exon 122313 123191 . + . ID=Physo142231.1;Parent=Physo142231;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 124168 126957 . + . ID=Physo158493;biotype=protein_coding;external_name=C_scaffold_110000004;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 124168 126957 . + . ID=Physo158493;Parent=Physo158493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 124168 124551 . + 0 ID=Physo158493;Parent=Physo158493;rank=1 scaffold_110 . exon 124168 124551 . + . ID=Physo158493.1;Parent=Physo158493;constitutive=1;rank=1 scaffold_110 . CDS 124609 124913 . + 0 ID=Physo158493;Parent=Physo158493;rank=2 scaffold_110 . exon 124609 124913 . + . ID=Physo158493.2;Parent=Physo158493;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_110 . CDS 125076 125349 . + 0 ID=Physo158493;Parent=Physo158493;rank=3 scaffold_110 . exon 125076 125349 . + . ID=Physo158493.3;Parent=Physo158493;constitutive=1;ensembl_phase=2;rank=3 scaffold_110 . CDS 125761 126559 . + 0 ID=Physo158493;Parent=Physo158493;rank=4 scaffold_110 . exon 125761 126559 . + . ID=Physo158493.4;Parent=Physo158493;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_110 . CDS 126668 126957 . + 0 ID=Physo158493;Parent=Physo158493;rank=5 scaffold_110 . exon 126668 126957 . + . ID=Physo158493.5;Parent=Physo158493;constitutive=1;ensembl_phase=1;rank=5 scaffold_110 . biological_region 130638 130639 0.999 + . logic_name=eponine scaffold_110 . biological_region 130918 130919 0.999 + . logic_name=eponine scaffold_110 . biological_region 130973 130979 0.999 + . logic_name=eponine scaffold_110 . biological_region 131005 131010 0.999 + . logic_name=eponine scaffold_110 . biological_region 131012 131015 0.999 - . logic_name=eponine scaffold_110 . biological_region 131145 131148 0.999 + . logic_name=eponine scaffold_110 . biological_region 133280 133281 0.999 + . logic_name=eponine scaffold_110 . repeat_region 134078 134102 . ? . description=trf scaffold_110 . biological_region 135535 135536 0.999 + . logic_name=eponine scaffold_110 . biological_region 135724 135724 0.999 + . logic_name=eponine scaffold_110 . biological_region 135726 135729 0.999 - . logic_name=eponine scaffold_110 . biological_region 135764 135768 0.999 - . logic_name=eponine scaffold_110 . biological_region 138271 138272 0.999 - . logic_name=eponine scaffold_110 . repeat_region 138355 138382 . ? . description=trf scaffold_110 ensembl protein_coding_gene 130458 131585 . - . ID=Physo142233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100027;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 130458 131585 . - . ID=Physo142233;Parent=Physo142233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 130458 131585 . - 0 ID=Physo142233;Parent=Physo142233;rank=1 scaffold_110 . exon 130458 131585 . - . ID=Physo142233.1;Parent=Physo142233;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 134613 135593 . - . ID=Physo142234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100028;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 134613 135593 . - . ID=Physo142234;Parent=Physo142234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 134613 134924 . - 0 ID=Physo142234;Parent=Physo142234;rank=2 scaffold_110 . exon 134613 134924 . - . ID=Physo142234.2;Parent=Physo142234;constitutive=1;rank=2 scaffold_110 . CDS 135102 135593 . - 0 ID=Physo142234;Parent=Physo142234;rank=1 scaffold_110 . exon 135102 135593 . - . ID=Physo142234.1;Parent=Physo142234;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 136063 137256 . - . ID=Physo142235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100029;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 136063 137256 . - . ID=Physo142235;Parent=Physo142235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 136063 136489 . - 0 ID=Physo142235;Parent=Physo142235;rank=4 scaffold_110 . exon 136063 136489 . - . ID=Physo142235.4;Parent=Physo142235;constitutive=1;ensembl_phase=2;rank=4 scaffold_110 . CDS 136570 136851 . - 0 ID=Physo142235;Parent=Physo142235;rank=3 scaffold_110 . exon 136570 136851 . - . ID=Physo142235.3;Parent=Physo142235;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_110 . CDS 136923 137011 . - 0 ID=Physo142235;Parent=Physo142235;rank=2 scaffold_110 . exon 136923 137011 . - . ID=Physo142235.2;Parent=Physo142235;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_110 . CDS 137092 137256 . - 0 ID=Physo142235;Parent=Physo142235;rank=1 scaffold_110 . exon 137092 137256 . - . ID=Physo142235.1;Parent=Physo142235;constitutive=1;rank=1 scaffold_110 . repeat_region 138673 138695 . ? . description=dust scaffold_110 . repeat_region 140479 140486 . ? . description=dust scaffold_110 . repeat_region 143321 143329 . ? . description=dust scaffold_110 . repeat_region 147342 147391 . ? . description=dust scaffold_110 ensembl protein_coding_gene 146335 147264 . + . ID=Physo109456;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1100003;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 146335 147264 . + . ID=Physo109456;Parent=Physo109456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 146335 147264 . + 0 ID=Physo109456;Parent=Physo109456;rank=1 scaffold_110 . exon 146335 147264 . + . ID=Physo109456.1;Parent=Physo109456;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 138723 140237 . + . ID=Physo142236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100030;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 138723 140237 . + . ID=Physo142236;Parent=Physo142236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 138723 140237 . + 0 ID=Physo142236;Parent=Physo142236;rank=1 scaffold_110 . exon 138723 140237 . + . ID=Physo142236.1;Parent=Physo142236;constitutive=1;rank=1 scaffold_110 . biological_region 154481 154481 0.999 + . logic_name=eponine scaffold_110 . biological_region 155693 155699 0.999 + . logic_name=eponine scaffold_110 ensembl protein_coding_gene 158113 159042 . + . ID=Physo109457;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1100004;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 158113 159042 . + . ID=Physo109457;Parent=Physo109457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 158113 159042 . + 0 ID=Physo109457;Parent=Physo109457;rank=1 scaffold_110 . exon 158113 159042 . + . ID=Physo109457.1;Parent=Physo109457;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 154725 155173 . + . ID=Physo142238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100032;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 154725 155173 . + . ID=Physo142238;Parent=Physo142238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 154725 154761 . + 0 ID=Physo142238;Parent=Physo142238;rank=1 scaffold_110 . exon 154725 154761 . + . ID=Physo142238.1;Parent=Physo142238;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 . CDS 154797 155173 . + 0 ID=Physo142238;Parent=Physo142238;rank=2 scaffold_110 . exon 154797 155173 . + . ID=Physo142238.2;Parent=Physo142238;constitutive=1;ensembl_phase=1;rank=2 scaffold_110 ensembl protein_coding_gene 155521 156647 . - . ID=Physo142239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100033;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 155521 156647 . - . ID=Physo142239;Parent=Physo142239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 155521 156039 . - 0 ID=Physo142239;Parent=Physo142239;rank=2 scaffold_110 . exon 155521 156039 . - . ID=Physo142239.2;Parent=Physo142239;constitutive=1;rank=2 scaffold_110 . CDS 156549 156647 . - 0 ID=Physo142239;Parent=Physo142239;rank=1 scaffold_110 . exon 156549 156647 . - . ID=Physo142239.1;Parent=Physo142239;constitutive=1;rank=1 scaffold_110 . repeat_region 160740 160747 . ? . description=dust scaffold_110 . repeat_region 163318 163325 . ? . description=dust scaffold_110 . repeat_region 163841 163881 . ? . description=trf scaffold_110 . repeat_region 164978 165001 . ? . description=trf scaffold_110 . repeat_region 165109 165131 . ? . description=dust scaffold_110 . repeat_region 165422 165449 . ? . description=trf scaffold_110 ensembl protein_coding_gene 163567 165081 . - . ID=Physo142241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100035;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 163567 165081 . - . ID=Physo142241;Parent=Physo142241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 163567 165081 . - 0 ID=Physo142241;Parent=Physo142241;rank=1 scaffold_110 . exon 163567 165081 . - . ID=Physo142241.1;Parent=Physo142241;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 165542 167503 . + . ID=Physo142242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100036;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 165542 167503 . + . ID=Physo142242;Parent=Physo142242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 165542 166474 . + 0 ID=Physo142242;Parent=Physo142242;rank=1 scaffold_110 . exon 165542 166474 . + . ID=Physo142242.1;Parent=Physo142242;constitutive=1;rank=1 scaffold_110 . CDS 166555 166643 . + 0 ID=Physo142242;Parent=Physo142242;rank=2 scaffold_110 . exon 166555 166643 . + . ID=Physo142242.2;Parent=Physo142242;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_110 . CDS 166715 166996 . + 0 ID=Physo142242;Parent=Physo142242;rank=3 scaffold_110 . exon 166715 166996 . + . ID=Physo142242.3;Parent=Physo142242;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_110 . CDS 167077 167503 . + 0 ID=Physo142242;Parent=Physo142242;rank=4 scaffold_110 . exon 167077 167503 . + . ID=Physo142242.4;Parent=Physo142242;constitutive=1;ensembl_phase=2;rank=4 scaffold_110 ensembl protein_coding_gene 167973 169823 . + . ID=Physo142243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100037;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 167973 169823 . + . ID=Physo142243;Parent=Physo142243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 167973 169823 . + 0 ID=Physo142243;Parent=Physo142243;rank=1 scaffold_110 . exon 167973 169823 . + . ID=Physo142243.1;Parent=Physo142243;constitutive=1;rank=1 scaffold_110 . biological_region 169131 169131 0.999 + . logic_name=eponine scaffold_110 . biological_region 170343 170349 0.999 + . logic_name=eponine scaffold_110 . biological_region 170761 170763 0.999 + . logic_name=eponine scaffold_110 . biological_region 171653 171657 0.999 + . logic_name=eponine scaffold_110 . biological_region 171817 171823 0.999 + . logic_name=eponine scaffold_110 . biological_region 172680 172682 0.999 - . logic_name=eponine scaffold_110 . biological_region 174066 174068 0.999 + . logic_name=eponine scaffold_110 . biological_region 174925 174931 0.999 - . logic_name=eponine scaffold_110 . biological_region 175276 175278 0.999 + . logic_name=eponine scaffold_110 . biological_region 175430 175431 0.999 - . logic_name=eponine scaffold_110 . biological_region 175439 175441 0.999 - . logic_name=eponine scaffold_110 ensembl protein_coding_gene 175370 177494 . + . ID=Physo109458;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1100005;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 175370 177494 . + . ID=Physo109458;Parent=Physo109458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 175370 175448 . + 0 ID=Physo109458;Parent=Physo109458;rank=1 scaffold_110 . exon 175370 175448 . + . ID=Physo109458.1;Parent=Physo109458;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 . CDS 175557 175698 . + 0 ID=Physo109458;Parent=Physo109458;rank=2 scaffold_110 . exon 175557 175698 . + . ID=Physo109458.2;Parent=Physo109458;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_110 . CDS 175782 175875 . + 0 ID=Physo109458;Parent=Physo109458;rank=3 scaffold_110 . exon 175782 175875 . + . ID=Physo109458.3;Parent=Physo109458;constitutive=1;ensembl_phase=2;rank=3 scaffold_110 . CDS 175966 176758 . + 0 ID=Physo109458;Parent=Physo109458;rank=4 scaffold_110 . exon 175966 176758 . + . ID=Physo109458.4;Parent=Physo109458;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_110 . CDS 176944 177494 . + 0 ID=Physo109458;Parent=Physo109458;rank=5 scaffold_110 . exon 176944 177494 . + . ID=Physo109458.5;Parent=Physo109458;constitutive=1;ensembl_phase=1;rank=5 scaffold_110 ensembl protein_coding_gene 170171 171049 . - . ID=Physo142244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100038;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 170171 171049 . - . ID=Physo142244;Parent=Physo142244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 170171 170944 . - 0 ID=Physo142244;Parent=Physo142244;rank=1 scaffold_110 . exon 170171 171049 . - . ID=Physo142244.1;Parent=Physo142244;constitutive=1;ensembl_phase=-1;rank=1 scaffold_110 ensembl protein_coding_gene 177630 179824 . - . ID=Physo142246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100040;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 177630 179824 . - . ID=Physo142246;Parent=Physo142246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 177630 178433 . - 0 ID=Physo142246;Parent=Physo142246;rank=2 scaffold_110 . exon 177630 178433 . - . ID=Physo142246.2;Parent=Physo142246;constitutive=1;rank=2 scaffold_110 . CDS 178544 179824 . - 0 ID=Physo142246;Parent=Physo142246;rank=1 scaffold_110 . repeat_region 180578 180730 . ? . description=trf scaffold_110 . repeat_region 182742 182924 . + . description=GypsyPi-1c_LTR scaffold_110 . exon 178544 179824 . - . ID=Physo142246.1;Parent=Physo142246;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 183442 184240 . + . ID=Physo142247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100041;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 183442 184240 . + . ID=Physo142247;Parent=Physo142247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 183442 183463 . + 0 ID=Physo142247;Parent=Physo142247;rank=1 scaffold_110 . exon 183442 183463 . + . ID=Physo142247.1;Parent=Physo142247;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 . CDS 183759 184240 . + 0 ID=Physo142247;Parent=Physo142247;rank=2 scaffold_110 . exon 183759 184240 . + . ID=Physo142247.2;Parent=Physo142247;constitutive=1;ensembl_phase=1;rank=2 scaffold_110 ensembl protein_coding_gene 184502 185860 . - . ID=Physo142248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100042;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 184502 185860 . - . ID=Physo142248;Parent=Physo142248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 184502 184914 . - 0 ID=Physo142248;Parent=Physo142248;rank=5 scaffold_110 . exon 184502 184914 . - . ID=Physo142248.5;Parent=Physo142248;constitutive=1;ensembl_phase=1;rank=5 scaffold_110 . CDS 185003 185008 . - 0 ID=Physo142248;Parent=Physo142248;rank=4 scaffold_110 . exon 185003 185008 . - . ID=Physo142248.4;Parent=Physo142248;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_110 . CDS 185305 185417 . - 0 ID=Physo142248;Parent=Physo142248;rank=3 scaffold_110 . exon 185305 185417 . - . ID=Physo142248.3;Parent=Physo142248;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_110 . CDS 185505 185665 . - 0 ID=Physo142248;Parent=Physo142248;rank=2 scaffold_110 . exon 185505 185665 . - . ID=Physo142248.2;Parent=Physo142248;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_110 . CDS 185744 185860 . - 0 ID=Physo142248;Parent=Physo142248;rank=1 scaffold_110 . exon 185744 185860 . - . ID=Physo142248.1;Parent=Physo142248;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 186151 186586 . + . ID=Physo142249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100043;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 186151 186586 . + . ID=Physo142249;Parent=Physo142249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 186151 186363 . + 0 ID=Physo142249;Parent=Physo142249;rank=1 scaffold_110 . exon 186151 186363 . + . ID=Physo142249.1;Parent=Physo142249;constitutive=1;rank=1 scaffold_110 . CDS 186401 186586 . + 0 ID=Physo142249;Parent=Physo142249;rank=2 scaffold_110 . exon 186401 186586 . + . ID=Physo142249.2;Parent=Physo142249;constitutive=1;rank=2 scaffold_110 . biological_region 189537 189540 0.999 + . logic_name=eponine scaffold_110 . biological_region 191292 191293 0.999 - . logic_name=eponine scaffold_110 ensembl protein_coding_gene 190785 191353 . - . ID=Physo142250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100044;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 190785 191353 . - . ID=Physo142250;Parent=Physo142250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 190785 190874 . - 0 ID=Physo142250;Parent=Physo142250;rank=2 scaffold_110 . exon 190785 190874 . - . ID=Physo142250.2;Parent=Physo142250;constitutive=1;rank=2 scaffold_110 . CDS 190943 191353 . - 0 ID=Physo142250;Parent=Physo142250;rank=1 scaffold_110 . exon 190943 191353 . - . ID=Physo142250.1;Parent=Physo142250;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 193373 194684 . - . ID=Physo142251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100045;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 193373 194684 . - . ID=Physo142251;Parent=Physo142251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 193373 194079 . - 0 ID=Physo142251;Parent=Physo142251;rank=2 scaffold_110 . exon 193373 194079 . - . ID=Physo142251.2;Parent=Physo142251;constitutive=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 194231 194684 . - 0 ID=Physo142251;Parent=Physo142251;rank=1 scaffold_110 . exon 194231 194684 . - . ID=Physo142251.1;Parent=Physo142251;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 . repeat_region 203667 203676 . ? . description=dust scaffold_110 . repeat_region 207343 207355 . ? . description=dust scaffold_110 ensembl protein_coding_gene 198304 199182 . + . ID=Physo142252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100046;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 198304 199182 . + . ID=Physo142252;Parent=Physo142252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 198304 199182 . + 0 ID=Physo142252;Parent=Physo142252;rank=1 scaffold_110 . exon 198304 199182 . + . ID=Physo142252.1;Parent=Physo142252;constitutive=1;rank=1 scaffold_110 . repeat_region 208185 208230 . ? . description=trf scaffold_110 . biological_region 211113 211115 0.999 - . logic_name=eponine scaffold_110 . biological_region 211817 211818 0.999 - . logic_name=eponine scaffold_110 . biological_region 212561 212565 0.999 + . logic_name=eponine scaffold_110 . biological_region 212861 212862 0.999 + . logic_name=eponine scaffold_110 . biological_region 213929 213930 0.999 - . logic_name=eponine scaffold_110 . biological_region 217302 217308 0.999 + . logic_name=eponine scaffold_110 ensembl protein_coding_gene 213179 216010 . + . ID=Physo142253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100047;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 213179 216010 . + . ID=Physo142253;Parent=Physo142253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . exon 213179 213451 . + . ID=Physo142253.1;Parent=Physo142253;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_110 . exon 213544 213583 . + . ID=Physo142253.2;Parent=Physo142253;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_110 . exon 213684 216010 . + . ID=Physo142253.3;Parent=Physo142253;constitutive=1;ensembl_phase=-1;rank=3 scaffold_110 . CDS 213854 216010 . + 0 ID=Physo142253;Parent=Physo142253;rank=1 scaffold_110 ensembl protein_coding_gene 216522 217634 . + . ID=Physo142254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100048;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 216522 217634 . + . ID=Physo142254;Parent=Physo142254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 216522 217634 . + 0 ID=Physo142254;Parent=Physo142254;rank=1 scaffold_110 . exon 216522 217634 . + . ID=Physo142254.1;Parent=Physo142254;constitutive=1;rank=1 scaffold_110 . repeat_region 219314 219321 . ? . description=dust scaffold_110 . repeat_region 223510 223518 . ? . description=dust scaffold_110 . repeat_region 223622 223645 . ? . description=dust scaffold_110 ensembl protein_coding_gene 218059 219288 . + . ID=Physo142255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100049;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 218059 219288 . + . ID=Physo142255;Parent=Physo142255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 218059 219288 . + 0 ID=Physo142255;Parent=Physo142255;rank=1 scaffold_110 . exon 218059 219288 . + . ID=Physo142255.1;Parent=Physo142255;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 220269 222007 . - . ID=Physo142256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100050;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 220269 222007 . - . ID=Physo142256;Parent=Physo142256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 220269 221150 . - 0 ID=Physo142256;Parent=Physo142256;rank=4 scaffold_110 . exon 220269 221150 . - . ID=Physo142256.4;Parent=Physo142256;constitutive=1;rank=4 scaffold_110 . CDS 221223 221291 . - 0 ID=Physo142256;Parent=Physo142256;rank=3 scaffold_110 . exon 221223 221291 . - . ID=Physo142256.3;Parent=Physo142256;constitutive=1;rank=3 scaffold_110 . CDS 221362 221648 . - 0 ID=Physo142256;Parent=Physo142256;rank=2 scaffold_110 . exon 221362 221648 . - . ID=Physo142256.2;Parent=Physo142256;constitutive=1;ensembl_phase=1;rank=2 scaffold_110 . CDS 221728 222007 . - 0 ID=Physo142256;Parent=Physo142256;rank=1 scaffold_110 . exon 221728 222007 . - . ID=Physo142256.1;Parent=Physo142256;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_110 ensembl protein_coding_gene 224586 225893 . - . ID=Physo142257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100051;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 224586 225893 . - . ID=Physo142257;Parent=Physo142257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 224586 225893 . - 0 ID=Physo142257;Parent=Physo142257;rank=1 scaffold_110 . exon 224586 225893 . - . ID=Physo142257.1;Parent=Physo142257;constitutive=1;rank=1 scaffold_110 ensembl protein_coding_gene 227009 227783 . + . ID=Physo142258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100052;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 227009 227783 . + . ID=Physo142258;Parent=Physo142258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 227009 227422 . + 0 ID=Physo142258;Parent=Physo142258;rank=1 scaffold_110 . exon 227009 227422 . + . ID=Physo142258.1;Parent=Physo142258;constitutive=1;rank=1 scaffold_110 . CDS 227445 227783 . + 0 ID=Physo142258;Parent=Physo142258;rank=2 scaffold_110 . exon 227445 227783 . + . ID=Physo142258.2;Parent=Physo142258;constitutive=1;rank=2 scaffold_110 . biological_region 227537 227540 0.999 + . logic_name=eponine scaffold_110 . biological_region 227631 227633 0.999 + . logic_name=eponine scaffold_110 . repeat_region 236152 236218 . ? . description=trf scaffold_110 ensembl protein_coding_gene 228394 236744 . - . ID=Physo142259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1100053;logic_name=jgi_physo1_1 scaffold_110 ensembl transcript 228394 236744 . - . ID=Physo142259;Parent=Physo142259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_110 . CDS 228394 228403 . - 0 ID=Physo142259;Parent=Physo142259;rank=16 scaffold_110 . exon 228394 228403 . - . ID=Physo142259.16;Parent=Physo142259;constitutive=1;ensembl_phase=2;rank=16 scaffold_110 . CDS 228630 229294 . - 0 ID=Physo142259;Parent=Physo142259;rank=15 scaffold_110 . exon 228630 229294 . - . ID=Physo142259.15;Parent=Physo142259;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_110 . CDS 229341 230561 . - 0 ID=Physo142259;Parent=Physo142259;rank=14 scaffold_110 . exon 229341 230561 . - . ID=Physo142259.14;Parent=Physo142259;constitutive=1;rank=14 scaffold_110 . CDS 230681 230782 . - 0 ID=Physo142259;Parent=Physo142259;rank=13 scaffold_110 . exon 230681 230782 . - . ID=Physo142259.13;Parent=Physo142259;constitutive=1;rank=13 scaffold_110 . CDS 230831 230919 . - 0 ID=Physo142259;Parent=Physo142259;rank=12 scaffold_110 . exon 230831 230919 . - . ID=Physo142259.12;Parent=Physo142259;constitutive=1;ensembl_phase=1;rank=12 scaffold_110 . CDS 231014 231712 . - 0 ID=Physo142259;Parent=Physo142259;rank=11 scaffold_110 . exon 231014 231712 . - . ID=Physo142259.11;Parent=Physo142259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_110 . CDS 231854 232200 . - 0 ID=Physo142259;Parent=Physo142259;rank=10 scaffold_110 . exon 231854 232200 . - . ID=Physo142259.10;Parent=Physo142259;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_110 . CDS 232622 232976 . - 0 ID=Physo142259;Parent=Physo142259;rank=9 scaffold_110 . exon 232622 232976 . - . ID=Physo142259.9;Parent=Physo142259;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_110 . CDS 233019 233174 . - 0 ID=Physo142259;Parent=Physo142259;rank=8 scaffold_110 . exon 233019 233174 . - . ID=Physo142259.8;Parent=Physo142259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_110 . CDS 233591 233987 . - 0 ID=Physo142259;Parent=Physo142259;rank=7 scaffold_110 . exon 233591 233987 . - . ID=Physo142259.7;Parent=Physo142259;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_110 . CDS 234227 234433 . - 0 ID=Physo142259;Parent=Physo142259;rank=6 scaffold_110 . exon 234227 234433 . - . ID=Physo142259.6;Parent=Physo142259;constitutive=1;rank=6 scaffold_110 . CDS 234513 234797 . - 0 ID=Physo142259;Parent=Physo142259;rank=5 scaffold_110 . exon 234513 234797 . - . ID=Physo142259.5;Parent=Physo142259;constitutive=1;rank=5 scaffold_110 . CDS 234883 235317 . - 0 ID=Physo142259;Parent=Physo142259;rank=4 scaffold_110 . exon 234883 235317 . - . ID=Physo142259.4;Parent=Physo142259;constitutive=1;rank=4 scaffold_110 . CDS 235449 235740 . - 0 ID=Physo142259;Parent=Physo142259;rank=3 scaffold_110 . exon 235449 235740 . - . ID=Physo142259.3;Parent=Physo142259;constitutive=1;ensembl_phase=2;rank=3 scaffold_110 . CDS 235974 236180 . - 0 ID=Physo142259;Parent=Physo142259;rank=2 scaffold_110 . exon 235974 236180 . - . ID=Physo142259.2;Parent=Physo142259;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_110 . CDS 236260 236744 . - 0 ID=Physo142259;Parent=Physo142259;rank=1 scaffold_110 . exon 236260 236744 . - . ID=Physo142259.1;Parent=Physo142259;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_110 . repeat_region 237771 237795 . ? . description=dust scaffold_110 . repeat_region 243441 243857 . + . description=Gypsy-2-I_PI-int ##gff-version 3 ##sequence-region scaffold_108 1 260282 scaffold_108 . repeat_region 720 745 . ? . description=trf scaffold_108 . repeat_region 1110 1336 . ? . description=dust scaffold_108 . biological_region 2373 2376 0.999 + . logic_name=eponine scaffold_108 . biological_region 5381 5387 0.999 + . logic_name=eponine scaffold_108 . biological_region 5741 5744 0.999 + . logic_name=eponine scaffold_108 . biological_region 5811 5814 0.999 + . logic_name=eponine scaffold_108 . biological_region 5839 5840 0.999 - . logic_name=eponine scaffold_108 . biological_region 5876 5880 0.999 - . logic_name=eponine scaffold_108 . repeat_region 6411 8788 . + . description=GypsyPi-1c_I-int scaffold_108 . repeat_region 8959 11330 . ? . description=dust scaffold_108 ensembl tRNA_gene 415 494 . + . ID=EPrPSOG00000000094;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_108 ensembl transcript 415 494 . + . ID=EPrPSOT00000000094;Parent=EPrPSOG00000000094;biotype=tRNA;logic_name=ncrna_eg scaffold_108 . exon 415 494 . + . ID=EPrPSOE00000000094;Parent=EPrPSOT00000000094;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 ensembl protein_coding_gene 1712 3359 . + . ID=Physo142072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080001;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 1712 3359 . + . ID=Physo142072;Parent=Physo142072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 1712 1943 . + 0 ID=Physo142072;Parent=Physo142072;rank=1 scaffold_108 . exon 1712 1943 . + . ID=Physo142072.1;Parent=Physo142072;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 . CDS 1979 2400 . + 0 ID=Physo142072;Parent=Physo142072;rank=2 scaffold_108 . exon 1979 2400 . + . ID=Physo142072.2;Parent=Physo142072;constitutive=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 2432 2638 . + 0 ID=Physo142072;Parent=Physo142072;rank=3 scaffold_108 . exon 2432 2638 . + . ID=Physo142072.3;Parent=Physo142072;constitutive=1;rank=3 scaffold_108 . CDS 2681 2993 . + 0 ID=Physo142072;Parent=Physo142072;rank=4 scaffold_108 . exon 2681 2993 . + . ID=Physo142072.4;Parent=Physo142072;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_108 . CDS 3044 3261 . + 0 ID=Physo142072;Parent=Physo142072;rank=5 scaffold_108 . exon 3044 3261 . + . ID=Physo142072.5;Parent=Physo142072;constitutive=1;ensembl_phase=1;rank=5 scaffold_108 . CDS 3312 3359 . + 0 ID=Physo142072;Parent=Physo142072;rank=6 scaffold_108 . exon 3312 3359 . + . ID=Physo142072.6;Parent=Physo142072;constitutive=1;rank=6 scaffold_108 ensembl protein_coding_gene 4002 8827 . + . ID=Physo142073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080002;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 4002 8827 . + . ID=Physo142073;Parent=Physo142073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 4002 4490 . + 0 ID=Physo142073;Parent=Physo142073;rank=1 scaffold_108 . exon 4002 4490 . + . ID=Physo142073.1;Parent=Physo142073;constitutive=1;rank=1 scaffold_108 . CDS 5110 6331 . + 0 ID=Physo142073;Parent=Physo142073;rank=2 scaffold_108 . exon 5110 6331 . + . ID=Physo142073.2;Parent=Physo142073;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_108 . CDS 6362 8779 . + 0 ID=Physo142073;Parent=Physo142073;rank=3 scaffold_108 . exon 6362 8779 . + . ID=Physo142073.3;Parent=Physo142073;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 8811 8827 . + 0 ID=Physo142073;Parent=Physo142073;rank=4 scaffold_108 . exon 8811 8827 . + . ID=Physo142073.4;Parent=Physo142073;constitutive=1;ensembl_phase=1;rank=4 scaffold_108 ensembl tRNA_gene 12355 12434 . - . ID=EPrPSOG00000000033;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_108 ensembl transcript 12355 12434 . - . ID=EPrPSOT00000000033;Parent=EPrPSOG00000000033;biotype=tRNA;logic_name=ncrna_eg scaffold_108 . exon 12355 12434 . - . ID=EPrPSOE00000000033;Parent=EPrPSOT00000000033;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . repeat_region 19701 19805 . - . description=Gypsy-1-I_PI-int scaffold_108 . biological_region 23438 23438 0.999 - . logic_name=eponine scaffold_108 . biological_region 24282 24288 0.999 - . logic_name=eponine scaffold_108 . biological_region 24339 24341 0.999 + . logic_name=eponine scaffold_108 . biological_region 24411 24417 0.999 - . logic_name=eponine scaffold_108 . biological_region 24467 24470 0.999 + . logic_name=eponine scaffold_108 . biological_region 24472 24472 0.999 - . logic_name=eponine scaffold_108 . biological_region 24489 24492 0.999 - . logic_name=eponine scaffold_108 . biological_region 24544 24549 0.999 + . logic_name=eponine scaffold_108 . biological_region 24574 24575 0.999 - . logic_name=eponine scaffold_108 . biological_region 24899 24899 0.999 - . logic_name=eponine scaffold_108 . biological_region 25706 25710 0.999 - . logic_name=eponine scaffold_108 . repeat_region 26086 26110 . ? . description=trf scaffold_108 . biological_region 26146 26147 0.999 - . logic_name=eponine scaffold_108 . biological_region 26329 26334 0.999 - . logic_name=eponine scaffold_108 . biological_region 27041 27041 0.999 - . logic_name=eponine scaffold_108 . biological_region 27463 27463 0.999 + . logic_name=eponine scaffold_108 ensembl protein_coding_gene 26843 28105 . + . ID=Physo109442;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1080001;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 26843 28105 . + . ID=Physo109442;Parent=Physo109442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 26843 28105 . + 0 ID=Physo109442;Parent=Physo109442;rank=1 scaffold_108 . exon 26843 28105 . + . ID=Physo109442.1;Parent=Physo109442;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 19321 19632 . - . ID=Physo142074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080003;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 19321 19632 . - . ID=Physo142074;Parent=Physo142074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 19321 19632 . - 0 ID=Physo142074;Parent=Physo142074;rank=1 scaffold_108 . exon 19321 19632 . - . ID=Physo142074.1;Parent=Physo142074;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 22011 23596 . + . ID=Physo142075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080004;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 22011 23596 . + . ID=Physo142075;Parent=Physo142075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 22011 22321 . + 0 ID=Physo142075;Parent=Physo142075;rank=1 scaffold_108 . exon 22011 22321 . + . ID=Physo142075.1;Parent=Physo142075;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . CDS 22579 22882 . + 0 ID=Physo142075;Parent=Physo142075;rank=2 scaffold_108 . exon 22579 22882 . + . ID=Physo142075.2;Parent=Physo142075;constitutive=1;ensembl_phase=2;rank=2 scaffold_108 . CDS 22955 23596 . + 0 ID=Physo142075;Parent=Physo142075;rank=3 scaffold_108 . exon 22955 23596 . + . ID=Physo142075.3;Parent=Physo142075;constitutive=1;rank=3 scaffold_108 ensembl protein_coding_gene 24515 26451 . + . ID=Physo142076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080005;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 24515 26451 . + . ID=Physo142076;Parent=Physo142076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 24515 25404 . + 0 ID=Physo142076;Parent=Physo142076;rank=1 scaffold_108 . exon 24515 25404 . + . ID=Physo142076.1;Parent=Physo142076;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . CDS 25482 26451 . + 0 ID=Physo142076;Parent=Physo142076;rank=2 scaffold_108 . exon 25482 26451 . + . ID=Physo142076.2;Parent=Physo142076;constitutive=1;ensembl_phase=2;rank=2 scaffold_108 ensembl protein_coding_gene 28351 32160 . - . ID=Physo142078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080007;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 28351 32160 . - . ID=Physo142078;Parent=Physo142078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 28351 31124 . - 0 ID=Physo142078;Parent=Physo142078;rank=3 scaffold_108 . exon 28351 31124 . - . ID=Physo142078.3;Parent=Physo142078;constitutive=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 31206 31539 . - 0 ID=Physo142078;Parent=Physo142078;rank=2 scaffold_108 . CDS 31600 32160 . - 0 ID=Physo142078;Parent=Physo142078;rank=1 scaffold_108 . exon 31206 31539 . - . ID=Physo142078.2;Parent=Physo142078;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_108 . exon 31600 32160 . - . ID=Physo142078.1;Parent=Physo142078;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 37570 38763 . - . ID=Physo142079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080008;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 37570 38763 . - . ID=Physo142079;Parent=Physo142079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 37570 38763 . - 0 ID=Physo142079;Parent=Physo142079;rank=1 scaffold_108 . exon 37570 38763 . - . ID=Physo142079.1;Parent=Physo142079;constitutive=1;rank=1 scaffold_108 . repeat_region 38780 38824 . ? . description=dust scaffold_108 . biological_region 40081 40083 0.999 - . logic_name=eponine scaffold_108 . biological_region 42064 42065 0.999 + . logic_name=eponine scaffold_108 . repeat_region 45940 45987 . ? . description=trf scaffold_108 . biological_region 46614 46617 0.999 - . logic_name=eponine scaffold_108 . repeat_region 47440 47743 . - . description=GypsyPi-1c_LTR scaffold_108 . repeat_region 47744 47981 . - . description=GypsyPi-1c_I-int scaffold_108 . biological_region 48184 48189 0.999 + . logic_name=eponine scaffold_108 ensembl protein_coding_gene 39242 39861 . + . ID=Physo142080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080009;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 39242 39861 . + . ID=Physo142080;Parent=Physo142080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 39242 39625 . + 0 ID=Physo142080;Parent=Physo142080;rank=1 scaffold_108 . exon 39242 39625 . + . ID=Physo142080.1;Parent=Physo142080;constitutive=1;rank=1 scaffold_108 . CDS 39829 39861 . + 0 ID=Physo142080;Parent=Physo142080;rank=2 scaffold_108 . exon 39829 39861 . + . ID=Physo142080.2;Parent=Physo142080;constitutive=1;rank=2 scaffold_108 ensembl protein_coding_gene 45021 47166 . - . ID=Physo142081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080010;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 45021 47166 . - . ID=Physo142081;Parent=Physo142081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 45021 45061 . - 0 ID=Physo142081;Parent=Physo142081;rank=5 scaffold_108 . exon 45021 45061 . - . ID=Physo142081.5;Parent=Physo142081;constitutive=1;ensembl_phase=1;rank=5 scaffold_108 . CDS 45205 45975 . - 0 ID=Physo142081;Parent=Physo142081;rank=4 scaffold_108 . exon 45205 45975 . - . ID=Physo142081.4;Parent=Physo142081;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_108 . CDS 45999 46129 . - 0 ID=Physo142081;Parent=Physo142081;rank=3 scaffold_108 . exon 45999 46129 . - . ID=Physo142081.3;Parent=Physo142081;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_108 . CDS 46250 46348 . - 0 ID=Physo142081;Parent=Physo142081;rank=2 scaffold_108 . exon 46250 46348 . - . ID=Physo142081.2;Parent=Physo142081;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_108 . CDS 46424 47166 . - 0 ID=Physo142081;Parent=Physo142081;rank=1 scaffold_108 . exon 46424 47166 . - . ID=Physo142081.1;Parent=Physo142081;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 ensembl protein_coding_gene 47930 48604 . + . ID=Physo142082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080011;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 47930 48604 . + . ID=Physo142082;Parent=Physo142082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 47930 48604 . + 0 ID=Physo142082;Parent=Physo142082;rank=1 scaffold_108 . exon 47930 48604 . + . ID=Physo142082.1;Parent=Physo142082;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 49108 53984 . - . ID=Physo142083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080012;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 49108 53984 . - . ID=Physo142083;Parent=Physo142083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 49108 49119 . - 0 ID=Physo142083;Parent=Physo142083;rank=6 scaffold_108 . exon 49108 49119 . - . ID=Physo142083.6;Parent=Physo142083;constitutive=1;rank=6 scaffold_108 . CDS 49199 50286 . - 0 ID=Physo142083;Parent=Physo142083;rank=5 scaffold_108 . exon 49199 50286 . - . ID=Physo142083.5;Parent=Physo142083;constitutive=1;ensembl_phase=1;rank=5 scaffold_108 . CDS 50466 51330 . - 0 ID=Physo142083;Parent=Physo142083;rank=4 scaffold_108 . exon 50466 51330 . - . ID=Physo142083.4;Parent=Physo142083;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_108 . CDS 51397 51851 . - 0 ID=Physo142083;Parent=Physo142083;rank=3 scaffold_108 . exon 51397 51851 . - . ID=Physo142083.3;Parent=Physo142083;constitutive=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 51888 52904 . - 0 ID=Physo142083;Parent=Physo142083;rank=2 scaffold_108 . exon 51888 52904 . - . ID=Physo142083.2;Parent=Physo142083;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 53114 53984 . - 0 ID=Physo142083;Parent=Physo142083;rank=1 scaffold_108 . exon 53114 53984 . - . ID=Physo142083.1;Parent=Physo142083;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 ensembl protein_coding_gene 54962 55706 . - . ID=Physo142084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080013;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 54962 55706 . - . ID=Physo142084;Parent=Physo142084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 54962 55084 . - 0 ID=Physo142084;Parent=Physo142084;rank=4 scaffold_108 . exon 54962 55084 . - . ID=Physo142084.4;Parent=Physo142084;constitutive=1;rank=4 scaffold_108 . CDS 55122 55346 . - 0 ID=Physo142084;Parent=Physo142084;rank=3 scaffold_108 . exon 55122 55346 . - . ID=Physo142084.3;Parent=Physo142084;constitutive=1;rank=3 scaffold_108 . CDS 55543 55614 . - 0 ID=Physo142084;Parent=Physo142084;rank=2 scaffold_108 . exon 55543 55614 . - . ID=Physo142084.2;Parent=Physo142084;constitutive=1;rank=2 scaffold_108 . CDS 55656 55706 . - 0 ID=Physo142084;Parent=Physo142084;rank=1 scaffold_108 . exon 55656 55706 . - . ID=Physo142084.1;Parent=Physo142084;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 56002 58500 . + . ID=Physo142085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080014;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 56002 58500 . + . ID=Physo142085;Parent=Physo142085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 56002 58500 . + 0 ID=Physo142085;Parent=Physo142085;rank=1 scaffold_108 . exon 56002 58500 . + . ID=Physo142085.1;Parent=Physo142085;constitutive=1;rank=1 scaffold_108 . biological_region 58095 58097 0.999 + . logic_name=eponine scaffold_108 . repeat_region 58522 58530 . ? . description=dust scaffold_108 . repeat_region 58818 58831 . ? . description=dust scaffold_108 . repeat_region 63869 63882 . ? . description=dust scaffold_108 . repeat_region 73233 73272 . ? . description=trf scaffold_108 . repeat_region 73275 73383 . + . description=(TGGA)n scaffold_108 . repeat_region 73308 73371 . ? . description=trf scaffold_108 . repeat_region 77067 77403 . - . description=Sola3-1_PS scaffold_108 . biological_region 78364 78369 0.999 + . logic_name=eponine scaffold_108 . repeat_region 78463 78473 . ? . description=dust scaffold_108 . biological_region 78607 78608 0.999 + . logic_name=eponine scaffold_108 . repeat_region 80396 80410 . ? . description=dust scaffold_108 . repeat_region 84238 84245 . ? . description=dust scaffold_108 . repeat_region 84413 84424 . ? . description=dust scaffold_108 . repeat_region 84483 84492 . ? . description=dust scaffold_108 ensembl protein_coding_gene 85162 86981 . - . ID=Physo142086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080015;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 85162 86981 . - . ID=Physo142086;Parent=Physo142086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 85162 85462 . - . ID=Physo142086.5;Parent=Physo142086;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_108 . CDS 85359 85462 . - 0 ID=Physo142086;Parent=Physo142086;rank=5 scaffold_108 . CDS 85693 85959 . - 0 ID=Physo142086;Parent=Physo142086;rank=4 scaffold_108 . exon 85693 85959 . - . ID=Physo142086.4;Parent=Physo142086;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_108 . CDS 86034 86770 . - 0 ID=Physo142086;Parent=Physo142086;rank=3 scaffold_108 . exon 86034 86770 . - . ID=Physo142086.3;Parent=Physo142086;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_108 . CDS 86866 86878 . - 0 ID=Physo142086;Parent=Physo142086;rank=2 scaffold_108 . CDS 86924 86981 . - 0 ID=Physo142086;Parent=Physo142086;rank=1 scaffold_108 . repeat_region 88255 88298 . ? . description=trf scaffold_108 . repeat_region 95466 95485 . ? . description=trf scaffold_108 . exon 86866 86878 . - . ID=Physo142086.2;Parent=Physo142086;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_108 . exon 86924 86981 . - . ID=Physo142086.1;Parent=Physo142086;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 ensembl protein_coding_gene 87575 88969 . - . ID=Physo142087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080016;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 87575 88969 . - . ID=Physo142087;Parent=Physo142087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 87575 87957 . - 0 ID=Physo142087;Parent=Physo142087;rank=5 scaffold_108 . exon 87575 87957 . - . ID=Physo142087.5;Parent=Physo142087;constitutive=1;ensembl_phase=1;rank=5 scaffold_108 . CDS 88041 88247 . - 0 ID=Physo142087;Parent=Physo142087;rank=4 scaffold_108 . exon 88041 88247 . - . ID=Physo142087.4;Parent=Physo142087;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_108 . CDS 88332 88574 . - 0 ID=Physo142087;Parent=Physo142087;rank=3 scaffold_108 . exon 88332 88574 . - . ID=Physo142087.3;Parent=Physo142087;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 88647 88697 . - 0 ID=Physo142087;Parent=Physo142087;rank=2 scaffold_108 . exon 88647 88697 . - . ID=Physo142087.2;Parent=Physo142087;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 88879 88969 . - 0 ID=Physo142087;Parent=Physo142087;rank=1 scaffold_108 . exon 88879 88969 . - . ID=Physo142087.1;Parent=Physo142087;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 ensembl protein_coding_gene 95613 98065 . + . ID=Physo142088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080017;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 95613 98065 . + . ID=Physo142088;Parent=Physo142088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 95613 96306 . + 0 ID=Physo142088;Parent=Physo142088;rank=1 scaffold_108 . exon 95613 96306 . + . ID=Physo142088.1;Parent=Physo142088;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 . CDS 96607 96917 . + 0 ID=Physo142088;Parent=Physo142088;rank=2 scaffold_108 . CDS 97018 97061 . + 0 ID=Physo142088;Parent=Physo142088;rank=3 scaffold_108 . CDS 97369 98065 . + 0 ID=Physo142088;Parent=Physo142088;rank=4 scaffold_108 . biological_region 99572 99575 0.999 - . logic_name=eponine scaffold_108 . biological_region 99650 99655 0.999 - . logic_name=eponine scaffold_108 . exon 96607 96917 . + . ID=Physo142088.2;Parent=Physo142088;constitutive=1;ensembl_phase=1;rank=2 scaffold_108 . exon 97018 97061 . + . ID=Physo142088.3;Parent=Physo142088;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_108 . exon 97369 98065 . + . ID=Physo142088.4;Parent=Physo142088;constitutive=1;ensembl_phase=2;rank=4 scaffold_108 ensembl protein_coding_gene 98077 98717 . - . ID=Physo142089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080018;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 98077 98717 . - . ID=Physo142089;Parent=Physo142089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 98077 98717 . - . ID=Physo142089.1;Parent=Physo142089;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_108 . CDS 98166 98717 . - 0 ID=Physo142089;Parent=Physo142089;rank=1 scaffold_108 ensembl protein_coding_gene 100856 101700 . - . ID=Physo142090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080019;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 100856 101700 . - . ID=Physo142090;Parent=Physo142090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 100856 101700 . - . ID=Physo142090.1;Parent=Physo142090;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_108 . CDS 101011 101700 . - 0 ID=Physo142090;Parent=Physo142090;rank=1 scaffold_108 ensembl protein_coding_gene 103843 105276 . + . ID=Physo142091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080020;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 103843 105276 . + . ID=Physo142091;Parent=Physo142091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 103843 104098 . + 0 ID=Physo142091;Parent=Physo142091;rank=1 scaffold_108 . exon 103843 104098 . + . ID=Physo142091.1;Parent=Physo142091;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 . CDS 104129 104286 . + 0 ID=Physo142091;Parent=Physo142091;rank=2 scaffold_108 . exon 104129 104286 . + . ID=Physo142091.2;Parent=Physo142091;constitutive=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 104470 105276 . + 0 ID=Physo142091;Parent=Physo142091;rank=3 scaffold_108 . exon 104470 105276 . + . ID=Physo142091.3;Parent=Physo142091;constitutive=1;rank=3 scaffold_108 ensembl protein_coding_gene 106128 107022 . - . ID=Physo142092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080021;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 106128 107022 . - . ID=Physo142092;Parent=Physo142092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 106128 106151 . - 0 ID=Physo142092;Parent=Physo142092;rank=4 scaffold_108 . exon 106128 106151 . - . ID=Physo142092.4;Parent=Physo142092;constitutive=1;rank=4 scaffold_108 . CDS 106210 106232 . - 0 ID=Physo142092;Parent=Physo142092;rank=3 scaffold_108 . exon 106210 106232 . - . ID=Physo142092.3;Parent=Physo142092;constitutive=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 106394 106514 . - 0 ID=Physo142092;Parent=Physo142092;rank=2 scaffold_108 . exon 106394 106514 . - . ID=Physo142092.2;Parent=Physo142092;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_108 . CDS 106618 107022 . - 0 ID=Physo142092;Parent=Physo142092;rank=1 scaffold_108 . exon 106618 107022 . - . ID=Physo142092.1;Parent=Physo142092;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 107160 108506 . + . ID=Physo142093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080022;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 107160 108506 . + . ID=Physo142093;Parent=Physo142093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 107160 107364 . + 0 ID=Physo142093;Parent=Physo142093;rank=1 scaffold_108 . exon 107160 107364 . + . ID=Physo142093.1;Parent=Physo142093;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 . CDS 107434 108506 . + 0 ID=Physo142093;Parent=Physo142093;rank=2 scaffold_108 . exon 107434 108506 . + . ID=Physo142093.2;Parent=Physo142093;constitutive=1;ensembl_phase=1;rank=2 scaffold_108 ensembl protein_coding_gene 109040 110566 . + . ID=Physo142094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080023;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 109040 110566 . + . ID=Physo142094;Parent=Physo142094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 109040 110566 . + 0 ID=Physo142094;Parent=Physo142094;rank=1 scaffold_108 . exon 109040 110566 . + . ID=Physo142094.1;Parent=Physo142094;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 110661 112771 . - . ID=Physo142095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080024;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 110661 112771 . - . ID=Physo142095;Parent=Physo142095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 110661 111614 . - 0 ID=Physo142095;Parent=Physo142095;rank=5 scaffold_108 . exon 110661 111614 . - . ID=Physo142095.5;Parent=Physo142095;constitutive=1;rank=5 scaffold_108 . CDS 111687 111788 . - 0 ID=Physo142095;Parent=Physo142095;rank=4 scaffold_108 . exon 111687 111788 . - . ID=Physo142095.4;Parent=Physo142095;constitutive=1;rank=4 scaffold_108 . CDS 111854 112032 . - 0 ID=Physo142095;Parent=Physo142095;rank=3 scaffold_108 . exon 111854 112032 . - . ID=Physo142095.3;Parent=Physo142095;constitutive=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 112125 112519 . - 0 ID=Physo142095;Parent=Physo142095;rank=2 scaffold_108 . exon 112125 112519 . - . ID=Physo142095.2;Parent=Physo142095;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_108 . CDS 112599 112771 . - 0 ID=Physo142095;Parent=Physo142095;rank=1 scaffold_108 . exon 112599 112771 . - . ID=Physo142095.1;Parent=Physo142095;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 ensembl protein_coding_gene 113395 115151 . - . ID=Physo142096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080025;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 113395 115151 . - . ID=Physo142096;Parent=Physo142096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 113395 114348 . - 0 ID=Physo142096;Parent=Physo142096;rank=4 scaffold_108 . exon 113395 114348 . - . ID=Physo142096.4;Parent=Physo142096;constitutive=1;rank=4 scaffold_108 . CDS 114426 114527 . - 0 ID=Physo142096;Parent=Physo142096;rank=3 scaffold_108 . exon 114426 114527 . - . ID=Physo142096.3;Parent=Physo142096;constitutive=1;rank=3 scaffold_108 . CDS 114598 114776 . - 0 ID=Physo142096;Parent=Physo142096;rank=2 scaffold_108 . exon 114598 114776 . - . ID=Physo142096.2;Parent=Physo142096;constitutive=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 114860 115151 . - 0 ID=Physo142096;Parent=Physo142096;rank=1 scaffold_108 . exon 114860 115151 . - . ID=Physo142096.1;Parent=Physo142096;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 . repeat_region 115927 115958 . ? . description=trf scaffold_108 . biological_region 116061 116069 0.999 - . logic_name=eponine scaffold_108 . repeat_region 117074 117164 . ? . description=trf scaffold_108 . repeat_region 119995 120021 . ? . description=dust scaffold_108 . repeat_region 119996 120021 . ? . description=trf scaffold_108 . biological_region 120336 120338 0.999 - . logic_name=eponine scaffold_108 . biological_region 120341 120343 0.999 + . logic_name=eponine scaffold_108 . biological_region 121106 121111 0.999 - . logic_name=eponine scaffold_108 . biological_region 125181 125182 0.999 + . logic_name=eponine scaffold_108 ensembl protein_coding_gene 115717 117951 . + . ID=Physo142097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080026;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 115717 117951 . + . ID=Physo142097;Parent=Physo142097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 115717 117951 . + 0 ID=Physo142097;Parent=Physo142097;rank=1 scaffold_108 . exon 115717 117951 . + . ID=Physo142097.1;Parent=Physo142097;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 119251 121098 . - . ID=Physo142098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080027;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 119251 121098 . - . ID=Physo142098;Parent=Physo142098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 119251 120837 . - 0 ID=Physo142098;Parent=Physo142098;rank=2 scaffold_108 . exon 119251 120837 . - . ID=Physo142098.2;Parent=Physo142098;constitutive=1;rank=2 scaffold_108 . CDS 120955 121098 . - 0 ID=Physo142098;Parent=Physo142098;rank=1 scaffold_108 . exon 120955 121098 . - . ID=Physo142098.1;Parent=Physo142098;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 121446 123474 . - . ID=Physo142099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080028;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 121446 123474 . - . ID=Physo142099;Parent=Physo142099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 121446 122627 . - 0 ID=Physo142099;Parent=Physo142099;rank=5 scaffold_108 . exon 121446 122627 . - . ID=Physo142099.5;Parent=Physo142099;constitutive=1;rank=5 scaffold_108 . CDS 122699 122884 . - 0 ID=Physo142099;Parent=Physo142099;rank=4 scaffold_108 . exon 122699 122884 . - . ID=Physo142099.4;Parent=Physo142099;constitutive=1;rank=4 scaffold_108 . CDS 122955 123074 . - 0 ID=Physo142099;Parent=Physo142099;rank=3 scaffold_108 . exon 122955 123074 . - . ID=Physo142099.3;Parent=Physo142099;constitutive=1;rank=3 scaffold_108 . CDS 123136 123243 . - 0 ID=Physo142099;Parent=Physo142099;rank=2 scaffold_108 . exon 123136 123243 . - . ID=Physo142099.2;Parent=Physo142099;constitutive=1;rank=2 scaffold_108 . CDS 123307 123474 . - 0 ID=Physo142099;Parent=Physo142099;rank=1 scaffold_108 . exon 123307 123474 . - . ID=Physo142099.1;Parent=Physo142099;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 125698 128752 . + . ID=Physo142100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080029;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 125698 128752 . + . ID=Physo142100;Parent=Physo142100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 125698 126465 . + 0 ID=Physo142100;Parent=Physo142100;rank=1 scaffold_108 . exon 125698 126465 . + . ID=Physo142100.1;Parent=Physo142100;constitutive=1;rank=1 scaffold_108 . CDS 126532 126934 . + 0 ID=Physo142100;Parent=Physo142100;rank=2 scaffold_108 . exon 126532 126934 . + . ID=Physo142100.2;Parent=Physo142100;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_108 . CDS 127034 127620 . + 0 ID=Physo142100;Parent=Physo142100;rank=3 scaffold_108 . exon 127034 127620 . + . ID=Physo142100.3;Parent=Physo142100;constitutive=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 127679 127772 . + 0 ID=Physo142100;Parent=Physo142100;rank=4 scaffold_108 . exon 127679 127772 . + . ID=Physo142100.4;Parent=Physo142100;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_108 . CDS 127845 128752 . + 0 ID=Physo142100;Parent=Physo142100;rank=5 scaffold_108 . exon 127845 128752 . + . ID=Physo142100.5;Parent=Physo142100;constitutive=1;ensembl_phase=1;rank=5 scaffold_108 ensembl protein_coding_gene 128933 129385 . - . ID=Physo142101;biotype=protein_coding;description=Avh4PsAvh4 [Source:UniProtKB/TrEMBL%3BAcc:B2C6F4];external_name=estExt_fgenesh1_pg.C_1080030;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 128933 129385 . - . ID=Physo142101;Parent=Physo142101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 128933 129385 . - 0 ID=Physo142101;Parent=Physo142101;rank=1 scaffold_108 . exon 128933 129385 . - . ID=Physo142101.1;Parent=Physo142101;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 132229 135492 . - . ID=Physo142102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080031;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 132229 135492 . - . ID=Physo142102;Parent=Physo142102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 132229 135492 . - 0 ID=Physo142102;Parent=Physo142102;rank=1 scaffold_108 . exon 132229 135492 . - . ID=Physo142102.1;Parent=Physo142102;constitutive=1;rank=1 scaffold_108 . biological_region 135043 135046 0.999 - . logic_name=eponine scaffold_108 . biological_region 135132 135135 0.999 - . logic_name=eponine scaffold_108 . biological_region 135179 135183 0.999 - . logic_name=eponine scaffold_108 . biological_region 135351 135354 0.999 - . logic_name=eponine scaffold_108 . biological_region 137494 137495 0.999 - . logic_name=eponine scaffold_108 . repeat_region 138100 138135 . ? . description=trf scaffold_108 . biological_region 138212 138217 0.999 - . logic_name=eponine scaffold_108 . biological_region 138270 138273 0.999 + . logic_name=eponine scaffold_108 . biological_region 141847 141853 0.999 + . logic_name=eponine scaffold_108 . biological_region 141876 141881 0.999 + . logic_name=eponine scaffold_108 . biological_region 141893 141896 0.999 + . logic_name=eponine scaffold_108 . biological_region 141946 141952 0.999 - . logic_name=eponine scaffold_108 . repeat_region 144399 144407 . ? . description=dust scaffold_108 ensembl protein_coding_gene 136937 138548 . + . ID=Physo109443;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1080002;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 136937 138548 . + . ID=Physo109443;Parent=Physo109443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 136937 136965 . + 0 ID=Physo109443;Parent=Physo109443;rank=1 scaffold_108 . exon 136937 136965 . + . ID=Physo109443.1;Parent=Physo109443;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . CDS 137040 138246 . + 0 ID=Physo109443;Parent=Physo109443;rank=2 scaffold_108 . exon 137040 138548 . + . ID=Physo109443.2;Parent=Physo109443;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_108 ensembl protein_coding_gene 138961 140220 . + . ID=Physo142104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080033;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 138961 140220 . + . ID=Physo142104;Parent=Physo142104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 138961 140220 . + 0 ID=Physo142104;Parent=Physo142104;rank=1 scaffold_108 . exon 138961 140220 . + . ID=Physo142104.1;Parent=Physo142104;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 140434 142074 . - . ID=Physo142105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080034;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 140434 142074 . - . ID=Physo142105;Parent=Physo142105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 140434 142074 . - 0 ID=Physo142105;Parent=Physo142105;rank=1 scaffold_108 . exon 140434 142074 . - . ID=Physo142105.1;Parent=Physo142105;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 142216 143124 . + . ID=Physo142106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080035;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 142216 143124 . + . ID=Physo142106;Parent=Physo142106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 142216 142359 . + 0 ID=Physo142106;Parent=Physo142106;rank=1 scaffold_108 . exon 142216 142359 . + . ID=Physo142106.1;Parent=Physo142106;constitutive=1;rank=1 scaffold_108 . CDS 142430 142558 . + 0 ID=Physo142106;Parent=Physo142106;rank=2 scaffold_108 . exon 142430 142558 . + . ID=Physo142106.2;Parent=Physo142106;constitutive=1;rank=2 scaffold_108 . CDS 142681 143124 . + 0 ID=Physo142106;Parent=Physo142106;rank=3 scaffold_108 . exon 142681 143124 . + . ID=Physo142106.3;Parent=Physo142106;constitutive=1;rank=3 scaffold_108 ensembl protein_coding_gene 152849 153617 . - . ID=Physo109444;biotype=protein_coding;description=Ribosomal protein L10 [Source:UniProtKB/TrEMBL%3BAcc:A7XGY6];external_name=estExt_fgenesh1_pm.C_1080003;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 152849 153617 . - . ID=Physo109444;Parent=Physo109444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 152849 153617 . - . ID=Physo109444.1;Parent=Physo109444;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_108 . CDS 152980 153606 . - 0 ID=Physo109444;Parent=Physo109444;rank=1 scaffold_108 ensembl protein_coding_gene 145830 147271 . + . ID=Physo142107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080036;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 145830 147271 . + . ID=Physo142107;Parent=Physo142107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 145830 145927 . + 0 ID=Physo142107;Parent=Physo142107;rank=1 scaffold_108 . exon 145830 145927 . + . ID=Physo142107.1;Parent=Physo142107;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . CDS 146008 146185 . + 0 ID=Physo142107;Parent=Physo142107;rank=2 scaffold_108 . exon 146008 146185 . + . ID=Physo142107.2;Parent=Physo142107;constitutive=1;ensembl_phase=2;rank=2 scaffold_108 . CDS 146258 146536 . + 0 ID=Physo142107;Parent=Physo142107;rank=3 scaffold_108 . exon 146258 146536 . + . ID=Physo142107.3;Parent=Physo142107;constitutive=1;rank=3 scaffold_108 . CDS 146615 147271 . + 0 ID=Physo142107;Parent=Physo142107;rank=4 scaffold_108 . exon 146615 147271 . + . ID=Physo142107.4;Parent=Physo142107;constitutive=1;rank=4 scaffold_108 ensembl protein_coding_gene 147635 148725 . + . ID=Physo142108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080037;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 147635 148725 . + . ID=Physo142108;Parent=Physo142108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 147635 147814 . + 0 ID=Physo142108;Parent=Physo142108;rank=1 scaffold_108 . exon 147635 147814 . + . ID=Physo142108.1;Parent=Physo142108;constitutive=1;rank=1 scaffold_108 . CDS 147902 147956 . + 0 ID=Physo142108;Parent=Physo142108;rank=2 scaffold_108 . exon 147902 147956 . + . ID=Physo142108.2;Parent=Physo142108;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_108 . CDS 148040 148330 . + 0 ID=Physo142108;Parent=Physo142108;rank=3 scaffold_108 . exon 148040 148330 . + . ID=Physo142108.3;Parent=Physo142108;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 148418 148725 . + 0 ID=Physo142108;Parent=Physo142108;rank=4 scaffold_108 . exon 148418 148725 . + . ID=Physo142108.4;Parent=Physo142108;constitutive=1;ensembl_phase=1;rank=4 scaffold_108 ensembl protein_coding_gene 148901 150839 . - . ID=Physo142109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080038;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 148901 150839 . - . ID=Physo142109;Parent=Physo142109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 148901 149515 . - 0 ID=Physo142109;Parent=Physo142109;rank=5 scaffold_108 . exon 148901 149515 . - . ID=Physo142109.5;Parent=Physo142109;constitutive=1;rank=5 scaffold_108 . CDS 149582 149643 . - 0 ID=Physo142109;Parent=Physo142109;rank=4 scaffold_108 . exon 149582 149643 . - . ID=Physo142109.4;Parent=Physo142109;constitutive=1;ensembl_phase=1;rank=4 scaffold_108 . CDS 149706 150019 . - 0 ID=Physo142109;Parent=Physo142109;rank=3 scaffold_108 . exon 149706 150019 . - . ID=Physo142109.3;Parent=Physo142109;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_108 . CDS 150106 150565 . - 0 ID=Physo142109;Parent=Physo142109;rank=2 scaffold_108 . exon 150106 150565 . - . ID=Physo142109.2;Parent=Physo142109;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_108 . CDS 150632 150839 . - 0 ID=Physo142109;Parent=Physo142109;rank=1 scaffold_108 . exon 150632 150839 . - . ID=Physo142109.1;Parent=Physo142109;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 ensembl protein_coding_gene 151018 152744 . + . ID=Physo142110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080039;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 151018 152744 . + . ID=Physo142110;Parent=Physo142110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 151018 151633 . + 0 ID=Physo142110;Parent=Physo142110;rank=1 scaffold_108 . exon 151018 151633 . + . ID=Physo142110.1;Parent=Physo142110;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 . CDS 151716 151920 . + 0 ID=Physo142110;Parent=Physo142110;rank=2 scaffold_108 . exon 151716 151920 . + . ID=Physo142110.2;Parent=Physo142110;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_108 . CDS 151991 152744 . + 0 ID=Physo142110;Parent=Physo142110;rank=3 scaffold_108 . exon 151991 152744 . + . ID=Physo142110.3;Parent=Physo142110;constitutive=1;ensembl_phase=2;rank=3 scaffold_108 . repeat_region 154447 154481 . ? . description=trf scaffold_108 . repeat_region 155284 155324 . ? . description=trf scaffold_108 . repeat_region 155284 155333 . ? . description=trf scaffold_108 . repeat_region 155550 155569 . ? . description=trf scaffold_108 . repeat_region 155619 155769 . ? . description=trf scaffold_108 . repeat_region 155632 155710 . ? . description=trf scaffold_108 . repeat_region 155671 155737 . ? . description=trf scaffold_108 . repeat_region 155726 155810 . ? . description=trf scaffold_108 . biological_region 155871 155872 0.999 + . logic_name=eponine scaffold_108 . repeat_region 157292 157300 . ? . description=dust scaffold_108 . biological_region 158695 158698 0.999 - . logic_name=eponine scaffold_108 . biological_region 159212 159215 0.999 + . logic_name=eponine scaffold_108 . repeat_region 160949 160956 . ? . description=dust scaffold_108 . repeat_region 163881 163899 . ? . description=dust scaffold_108 ensembl protein_coding_gene 156982 157128 . - . ID=Physo122560;biotype=protein_coding;external_name=estExt_Genewise1.C_1080026;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 156982 157128 . - . ID=Physo122560;Parent=Physo122560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 156982 157101 . - 0 ID=Physo122560;Parent=Physo122560;rank=1 scaffold_108 . exon 156982 157128 . - . ID=Physo122560.1;Parent=Physo122560;constitutive=1;ensembl_phase=-1;rank=1 scaffold_108 ensembl protein_coding_gene 154990 156078 . + . ID=Physo142112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080041;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 154990 156078 . + . ID=Physo142112;Parent=Physo142112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 154990 156078 . + 0 ID=Physo142112;Parent=Physo142112;rank=1 scaffold_108 . exon 154990 156078 . + . ID=Physo142112.1;Parent=Physo142112;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 157344 157805 . - . ID=Physo142113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080042;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 157344 157805 . - . ID=Physo142113;Parent=Physo142113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 157344 157523 . - 0 ID=Physo142113;Parent=Physo142113;rank=2 scaffold_108 . exon 157344 157523 . - . ID=Physo142113.2;Parent=Physo142113;constitutive=1;rank=2 scaffold_108 . CDS 157599 157805 . - 0 ID=Physo142113;Parent=Physo142113;rank=1 scaffold_108 . exon 157599 157805 . - . ID=Physo142113.1;Parent=Physo142113;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 158010 159599 . - . ID=Physo142114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080043;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 158010 159599 . - . ID=Physo142114;Parent=Physo142114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 158010 159103 . - . ID=Physo142114.3;Parent=Physo142114;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_108 . CDS 158093 159103 . - 0 ID=Physo142114;Parent=Physo142114;rank=3 scaffold_108 . CDS 159142 159312 . - 0 ID=Physo142114;Parent=Physo142114;rank=2 scaffold_108 . exon 159142 159312 . - . ID=Physo142114.2;Parent=Physo142114;constitutive=1;rank=2 scaffold_108 . CDS 159396 159599 . - 0 ID=Physo142114;Parent=Physo142114;rank=1 scaffold_108 . exon 159396 159599 . - . ID=Physo142114.1;Parent=Physo142114;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 165734 167554 . - . ID=Physo142115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080044;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 165734 167554 . - . ID=Physo142115;Parent=Physo142115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 165734 167298 . - 0 ID=Physo142115;Parent=Physo142115;rank=2 scaffold_108 . exon 165734 167298 . - . ID=Physo142115.2;Parent=Physo142115;constitutive=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 167431 167554 . - 0 ID=Physo142115;Parent=Physo142115;rank=1 scaffold_108 . exon 167431 167554 . - . ID=Physo142115.1;Parent=Physo142115;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 ensembl protein_coding_gene 168739 169638 . + . ID=Physo142116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080045;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 168739 169638 . + . ID=Physo142116;Parent=Physo142116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 168739 169638 . + 0 ID=Physo142116;Parent=Physo142116;rank=1 scaffold_108 . exon 168739 169638 . + . ID=Physo142116.1;Parent=Physo142116;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 170128 171031 . - . ID=Physo142117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080046;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 170128 171031 . - . ID=Physo142117;Parent=Physo142117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 170128 171009 . - 0 ID=Physo142117;Parent=Physo142117;rank=1 scaffold_108 . exon 170128 171031 . - . ID=Physo142117.1;Parent=Physo142117;constitutive=1;ensembl_phase=-1;rank=1 scaffold_108 ensembl protein_coding_gene 172134 173154 . - . ID=Physo142118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080047;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 172134 173154 . - . ID=Physo142118;Parent=Physo142118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 172134 172794 . - 0 ID=Physo142118;Parent=Physo142118;rank=2 scaffold_108 . exon 172134 172794 . - . ID=Physo142118.2;Parent=Physo142118;constitutive=1;ensembl_phase=2;rank=2 scaffold_108 . CDS 172886 173154 . - 0 ID=Physo142118;Parent=Physo142118;rank=1 scaffold_108 . exon 172886 173154 . - . ID=Physo142118.1;Parent=Physo142118;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . repeat_region 173815 173874 . ? . description=dust scaffold_108 . repeat_region 173907 173957 . ? . description=dust scaffold_108 . repeat_region 173907 173957 . ? . description=trf scaffold_108 . repeat_region 173908 174044 . ? . description=trf scaffold_108 . repeat_region 173925 173948 . ? . description=trf scaffold_108 . repeat_region 173975 174027 . ? . description=dust scaffold_108 . repeat_region 176136 176163 . ? . description=trf scaffold_108 . repeat_region 177228 177297 . ? . description=trf scaffold_108 . repeat_region 177449 177536 . ? . description=trf scaffold_108 . repeat_region 177805 177852 . ? . description=trf scaffold_108 . biological_region 178092 178093 0.999 - . logic_name=eponine scaffold_108 . biological_region 178427 178429 0.999 + . logic_name=eponine scaffold_108 ensembl protein_coding_gene 174558 175205 . - . ID=Physo142119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080048;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 174558 175205 . - . ID=Physo142119;Parent=Physo142119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 174558 175205 . - 0 ID=Physo142119;Parent=Physo142119;rank=1 scaffold_108 . exon 174558 175205 . - . ID=Physo142119.1;Parent=Physo142119;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 177084 178391 . - . ID=Physo142120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080049;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 177084 178391 . - . ID=Physo142120;Parent=Physo142120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 177084 178391 . - 0 ID=Physo142120;Parent=Physo142120;rank=1 scaffold_108 . exon 177084 178391 . - . ID=Physo142120.1;Parent=Physo142120;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 179067 180392 . + . ID=Physo142121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080050;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 179067 180392 . + . ID=Physo142121;Parent=Physo142121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 179067 179083 . + 0 ID=Physo142121;Parent=Physo142121;rank=1 scaffold_108 . exon 179067 179083 . + . ID=Physo142121.1;Parent=Physo142121;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . CDS 179291 179735 . + 0 ID=Physo142121;Parent=Physo142121;rank=2 scaffold_108 . exon 179291 179735 . + . ID=Physo142121.2;Parent=Physo142121;constitutive=1;ensembl_phase=2;rank=2 scaffold_108 . CDS 179796 179873 . + 0 ID=Physo142121;Parent=Physo142121;rank=3 scaffold_108 . exon 179796 179873 . + . ID=Physo142121.3;Parent=Physo142121;constitutive=1;rank=3 scaffold_108 . CDS 179948 180058 . + 0 ID=Physo142121;Parent=Physo142121;rank=4 scaffold_108 . exon 179948 180058 . + . ID=Physo142121.4;Parent=Physo142121;constitutive=1;rank=4 scaffold_108 . CDS 180138 180251 . + 0 ID=Physo142121;Parent=Physo142121;rank=5 scaffold_108 . exon 180138 180251 . + . ID=Physo142121.5;Parent=Physo142121;constitutive=1;rank=5 scaffold_108 . CDS 180390 180392 . + 0 ID=Physo142121;Parent=Physo142121;rank=6 scaffold_108 . exon 180390 180392 . + . ID=Physo142121.6;Parent=Physo142121;constitutive=1;rank=6 scaffold_108 ensembl protein_coding_gene 182594 183841 . + . ID=Physo142122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080051;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 182594 183841 . + . ID=Physo142122;Parent=Physo142122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 182594 182650 . + 0 ID=Physo142122;Parent=Physo142122;rank=1 scaffold_108 . exon 182594 182650 . + . ID=Physo142122.1;Parent=Physo142122;constitutive=1;rank=1 scaffold_108 . CDS 182753 183841 . + 0 ID=Physo142122;Parent=Physo142122;rank=2 scaffold_108 . exon 182753 183841 . + . ID=Physo142122.2;Parent=Physo142122;constitutive=1;rank=2 scaffold_108 ensembl protein_coding_gene 186178 186730 . - . ID=Physo122562;biotype=protein_coding;external_name=estExt_Genewise1.C_1080028;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 186178 186730 . - . ID=Physo122562;Parent=Physo122562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 186178 186730 . - . ID=Physo122562.1;Parent=Physo122562;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_108 . CDS 186276 186725 . - 0 ID=Physo122562;Parent=Physo122562;rank=1 scaffold_108 ensembl protein_coding_gene 184100 184698 . + . ID=Physo142123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080052;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 184100 184698 . + . ID=Physo142123;Parent=Physo142123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 184100 184560 . + . ID=Physo142123.1;Parent=Physo142123;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_108 . CDS 184101 184560 . + 0 ID=Physo142123;Parent=Physo142123;rank=1 scaffold_108 . CDS 184652 184671 . + 0 ID=Physo142123;Parent=Physo142123;rank=2 scaffold_108 . exon 184652 184698 . + . ID=Physo142123.2;Parent=Physo142123;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_108 ensembl protein_coding_gene 187030 187863 . - . ID=Physo142125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080054;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 187030 187863 . - . ID=Physo142125;Parent=Physo142125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 187030 187863 . - 0 ID=Physo142125;Parent=Physo142125;rank=1 scaffold_108 . exon 187030 187863 . - . ID=Physo142125.1;Parent=Physo142125;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 188224 190076 . - . ID=Physo142126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080055;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 188224 190076 . - . ID=Physo142126;Parent=Physo142126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 188224 190020 . - 0 ID=Physo142126;Parent=Physo142126;rank=1 scaffold_108 . exon 188224 190076 . - . ID=Physo142126.1;Parent=Physo142126;constitutive=1;ensembl_phase=-1;rank=1 scaffold_108 . repeat_region 192956 198482 . ? . description=dust scaffold_108 . biological_region 198867 198868 0.999 + . logic_name=eponine scaffold_108 . biological_region 198945 198948 0.999 + . logic_name=eponine scaffold_108 . biological_region 199191 199195 0.999 + . logic_name=eponine scaffold_108 . biological_region 199216 199221 0.999 - . logic_name=eponine scaffold_108 . biological_region 199243 199248 0.999 + . logic_name=eponine scaffold_108 . biological_region 199253 199254 0.999 - . logic_name=eponine scaffold_108 . biological_region 199328 199331 0.999 - . logic_name=eponine scaffold_108 . biological_region 199402 199406 0.999 + . logic_name=eponine scaffold_108 . repeat_region 199626 199756 . ? . description=dust scaffold_108 . biological_region 199820 199821 0.999 + . logic_name=eponine scaffold_108 . biological_region 199920 199926 0.999 - . logic_name=eponine scaffold_108 . biological_region 200006 200008 0.999 - . logic_name=eponine scaffold_108 . biological_region 200103 200104 0.999 - . logic_name=eponine scaffold_108 . biological_region 200178 200184 0.999 + . logic_name=eponine scaffold_108 . biological_region 200274 200276 0.999 - . logic_name=eponine scaffold_108 . biological_region 200316 200318 0.999 + . logic_name=eponine scaffold_108 . repeat_region 200700 201944 . ? . description=dust scaffold_108 . repeat_region 201974 202044 . ? . description=trf scaffold_108 ensembl protein_coding_gene 198782 199585 . - . ID=Physo142127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080056;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 198782 199585 . - . ID=Physo142127;Parent=Physo142127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 198782 199585 . - 0 ID=Physo142127;Parent=Physo142127;rank=1 scaffold_108 . exon 198782 199585 . - . ID=Physo142127.1;Parent=Physo142127;constitutive=1;rank=1 scaffold_108 . repeat_region 208243 208302 . + . description=(CAG)n scaffold_108 . repeat_region 208494 208676 . + . description=(CAG)n scaffold_108 ensembl protein_coding_gene 208925 209605 . - . ID=Physo109445;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1080004;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 208925 209605 . - . ID=Physo109445;Parent=Physo109445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 208925 209605 . - 0 ID=Physo109445;Parent=Physo109445;rank=1 scaffold_108 . exon 208925 209605 . - . ID=Physo109445.1;Parent=Physo109445;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 206365 208746 . + . ID=Physo142128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080057;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 206365 208746 . + . ID=Physo142128;Parent=Physo142128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 206365 208746 . + 0 ID=Physo142128;Parent=Physo142128;rank=1 scaffold_108 . exon 206365 208746 . + . ID=Physo142128.1;Parent=Physo142128;constitutive=1;rank=1 scaffold_108 . repeat_region 215745 215781 . ? . description=dust scaffold_108 . biological_region 215824 215825 0.999 + . logic_name=eponine scaffold_108 . biological_region 215957 215963 0.999 - . logic_name=eponine scaffold_108 . repeat_region 216728 216759 . ? . description=dust scaffold_108 . repeat_region 216731 216759 . ? . description=trf scaffold_108 . biological_region 217122 217124 0.999 - . logic_name=eponine scaffold_108 . biological_region 217185 217186 0.999 - . logic_name=eponine scaffold_108 . biological_region 218082 218082 0.999 - . logic_name=eponine scaffold_108 . biological_region 218134 218137 0.999 + . logic_name=eponine scaffold_108 . repeat_region 220889 220897 . ? . description=dust scaffold_108 . repeat_region 221477 221489 . ? . description=dust scaffold_108 . biological_region 221530 221533 0.999 + . logic_name=eponine scaffold_108 . biological_region 221741 221744 0.999 + . logic_name=eponine scaffold_108 ensembl protein_coding_gene 216999 217415 . + . ID=Physo122564;biotype=protein_coding;external_name=estExt_Genewise1.C_1080030;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 216999 217415 . + . ID=Physo122564;Parent=Physo122564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 216999 217415 . + . ID=Physo122564.1;Parent=Physo122564;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_108 . CDS 217034 217303 . + 0 ID=Physo122564;Parent=Physo122564;rank=1 scaffold_108 ensembl protein_coding_gene 214926 215965 . - . ID=Physo142130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080059;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 214926 215965 . - . ID=Physo142130;Parent=Physo142130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 214926 215575 . - 0 ID=Physo142130;Parent=Physo142130;rank=2 scaffold_108 . exon 214926 215575 . - . ID=Physo142130.2;Parent=Physo142130;constitutive=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 215662 215965 . - 0 ID=Physo142130;Parent=Physo142130;rank=1 scaffold_108 . exon 215662 215965 . - . ID=Physo142130.1;Parent=Physo142130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 ensembl protein_coding_gene 216460 216861 . - . ID=Physo142131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080060;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 216460 216861 . - . ID=Physo142131;Parent=Physo142131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 216460 216861 . - 0 ID=Physo142131;Parent=Physo142131;rank=1 scaffold_108 . exon 216460 216861 . - . ID=Physo142131.1;Parent=Physo142131;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 217604 219648 . + . ID=Physo142132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080061;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 217604 219648 . + . ID=Physo142132;Parent=Physo142132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 217604 219586 . + 0 ID=Physo142132;Parent=Physo142132;rank=1 scaffold_108 . exon 217604 219648 . + . ID=Physo142132.1;Parent=Physo142132;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_108 ensembl protein_coding_gene 219829 221384 . + . ID=Physo142133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080062;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 219829 221384 . + . ID=Physo142133;Parent=Physo142133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 219829 220121 . + 0 ID=Physo142133;Parent=Physo142133;rank=1 scaffold_108 . exon 219829 220121 . + . ID=Physo142133.1;Parent=Physo142133;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . CDS 220206 220445 . + 0 ID=Physo142133;Parent=Physo142133;rank=2 scaffold_108 . exon 220206 220445 . + . ID=Physo142133.2;Parent=Physo142133;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_108 . CDS 220538 220691 . + 0 ID=Physo142133;Parent=Physo142133;rank=3 scaffold_108 . exon 220538 220691 . + . ID=Physo142133.3;Parent=Physo142133;constitutive=1;ensembl_phase=2;rank=3 scaffold_108 . CDS 220767 220830 . + 0 ID=Physo142133;Parent=Physo142133;rank=4 scaffold_108 . exon 220767 220830 . + . ID=Physo142133.4;Parent=Physo142133;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_108 . CDS 220918 221384 . + 0 ID=Physo142133;Parent=Physo142133;rank=5 scaffold_108 . exon 220918 221384 . + . ID=Physo142133.5;Parent=Physo142133;constitutive=1;ensembl_phase=1;rank=5 scaffold_108 ensembl protein_coding_gene 221550 223182 . + . ID=Physo142134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080063;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 221550 223182 . + . ID=Physo142134;Parent=Physo142134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 221550 221561 . + . ID=Physo142134.1;Parent=Physo142134;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_108 . exon 221630 221718 . + . ID=Physo142134.2;Parent=Physo142134;constitutive=1;ensembl_phase=-1;rank=2 scaffold_108 . CDS 221659 221718 . + 0 ID=Physo142134;Parent=Physo142134;rank=1 scaffold_108 . CDS 221788 223074 . + 0 ID=Physo142134;Parent=Physo142134;rank=2 scaffold_108 ensembl protein_coding_gene 226402 227580 . + . ID=Physo109447;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1080006;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 226402 227580 . + . ID=Physo109447;Parent=Physo109447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 226402 227580 . + 0 ID=Physo109447;Parent=Physo109447;rank=1 scaffold_108 . exon 226402 227580 . + . ID=Physo109447.1;Parent=Physo109447;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 229204 231114 . - . ID=Physo109448;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1080007;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 229204 231114 . - . ID=Physo109448;Parent=Physo109448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 229204 229365 . - . ID=Physo109448.3;Parent=Physo109448;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_108 . CDS 229340 229365 . - 0 ID=Physo109448;Parent=Physo109448;rank=3 scaffold_108 . CDS 229407 230961 . - 0 ID=Physo109448;Parent=Physo109448;rank=2 scaffold_108 . exon 229407 230961 . - . ID=Physo109448.2;Parent=Physo109448;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_108 . CDS 231016 231114 . - 0 ID=Physo109448;Parent=Physo109448;rank=1 scaffold_108 . exon 231016 231114 . - . ID=Physo109448.1;Parent=Physo109448;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 223380 224792 . - . ID=Physo122568;biotype=protein_coding;external_name=estExt_Genewise1.C_1080034;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 223380 224792 . - . ID=Physo122568;Parent=Physo122568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . exon 223380 224222 . - . ID=Physo122568.2;Parent=Physo122568;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_108 . CDS 223600 224222 . - 0 ID=Physo122568;Parent=Physo122568;rank=2 scaffold_108 . CDS 224302 224758 . - 0 ID=Physo122568;Parent=Physo122568;rank=1 scaffold_108 . exon 224302 224792 . - . ID=Physo122568.1;Parent=Physo122568;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_108 . exon 221788 223182 . + . ID=Physo142134.3;Parent=Physo142134;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_108 ensembl protein_coding_gene 225150 225824 . - . ID=Physo142136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080065;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 225150 225824 . - . ID=Physo142136;Parent=Physo142136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 225150 225824 . - 0 ID=Physo142136;Parent=Physo142136;rank=1 scaffold_108 . exon 225150 225824 . - . ID=Physo142136.1;Parent=Physo142136;constitutive=1;rank=1 scaffold_108 ensembl protein_coding_gene 228140 228986 . + . ID=Physo142138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080067;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 228140 228986 . + . ID=Physo142138;Parent=Physo142138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 228140 228190 . + 0 ID=Physo142138;Parent=Physo142138;rank=1 scaffold_108 . exon 228140 228190 . + . ID=Physo142138.1;Parent=Physo142138;constitutive=1;rank=1 scaffold_108 . CDS 228246 228563 . + 0 ID=Physo142138;Parent=Physo142138;rank=2 scaffold_108 . exon 228246 228563 . + . ID=Physo142138.2;Parent=Physo142138;constitutive=1;rank=2 scaffold_108 . CDS 228648 228986 . + 0 ID=Physo142138;Parent=Physo142138;rank=3 scaffold_108 . exon 228648 228986 . + . ID=Physo142138.3;Parent=Physo142138;constitutive=1;rank=3 scaffold_108 ensembl protein_coding_gene 231369 235287 . + . ID=Physo142140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080069;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 231369 235287 . + . ID=Physo142140;Parent=Physo142140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 231369 231827 . + 0 ID=Physo142140;Parent=Physo142140;rank=1 scaffold_108 . exon 231369 231827 . + . ID=Physo142140.1;Parent=Physo142140;constitutive=1;rank=1 scaffold_108 . CDS 231911 232708 . + 0 ID=Physo142140;Parent=Physo142140;rank=2 scaffold_108 . CDS 232773 232977 . + 0 ID=Physo142140;Parent=Physo142140;rank=3 scaffold_108 . CDS 233279 233414 . + 0 ID=Physo142140;Parent=Physo142140;rank=4 scaffold_108 . CDS 233533 233719 . + 0 ID=Physo142140;Parent=Physo142140;rank=5 scaffold_108 . CDS 233875 233962 . + 0 ID=Physo142140;Parent=Physo142140;rank=6 scaffold_108 . CDS 234375 234454 . + 0 ID=Physo142140;Parent=Physo142140;rank=7 scaffold_108 . CDS 234518 234555 . + 0 ID=Physo142140;Parent=Physo142140;rank=8 scaffold_108 . CDS 234613 234670 . + 0 ID=Physo142140;Parent=Physo142140;rank=9 scaffold_108 . CDS 234749 234825 . + 0 ID=Physo142140;Parent=Physo142140;rank=10 scaffold_108 . CDS 234884 234950 . + 0 ID=Physo142140;Parent=Physo142140;rank=11 scaffold_108 . CDS 235017 235104 . + 0 ID=Physo142140;Parent=Physo142140;rank=12 scaffold_108 . CDS 235268 235287 . + 0 ID=Physo142140;Parent=Physo142140;rank=13 scaffold_108 . biological_region 237543 237543 0.999 + . logic_name=eponine scaffold_108 . exon 231911 232708 . + . ID=Physo142140.2;Parent=Physo142140;constitutive=1;rank=2 scaffold_108 . exon 232773 232977 . + . ID=Physo142140.3;Parent=Physo142140;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_108 . exon 233279 233414 . + . ID=Physo142140.4;Parent=Physo142140;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_108 . exon 233533 233719 . + . ID=Physo142140.5;Parent=Physo142140;constitutive=1;ensembl_phase=2;rank=5 scaffold_108 . exon 233875 233962 . + . ID=Physo142140.6;Parent=Physo142140;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_108 . exon 234375 234454 . + . ID=Physo142140.7;Parent=Physo142140;constitutive=1;ensembl_phase=1;rank=7 scaffold_108 . exon 234518 234555 . + . ID=Physo142140.8;Parent=Physo142140;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_108 . exon 234613 234670 . + . ID=Physo142140.9;Parent=Physo142140;constitutive=1;ensembl_phase=2;rank=9 scaffold_108 . exon 234749 234825 . + . ID=Physo142140.10;Parent=Physo142140;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_108 . exon 234884 234950 . + . ID=Physo142140.11;Parent=Physo142140;constitutive=1;ensembl_phase=2;rank=11 scaffold_108 . exon 235017 235104 . + . ID=Physo142140.12;Parent=Physo142140;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_108 . exon 235268 235287 . + . ID=Physo142140.13;Parent=Physo142140;constitutive=1;ensembl_phase=1;rank=13 scaffold_108 ensembl protein_coding_gene 235528 237010 . - . ID=Physo142141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080070;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 235528 237010 . - . ID=Physo142141;Parent=Physo142141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 235528 236474 . - 0 ID=Physo142141;Parent=Physo142141;rank=4 scaffold_108 . exon 235528 236474 . - . ID=Physo142141.4;Parent=Physo142141;constitutive=1;ensembl_phase=1;rank=4 scaffold_108 . CDS 236552 236674 . - 0 ID=Physo142141;Parent=Physo142141;rank=3 scaffold_108 . exon 236552 236674 . - . ID=Physo142141.3;Parent=Physo142141;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 236751 236831 . - 0 ID=Physo142141;Parent=Physo142141;rank=2 scaffold_108 . exon 236751 236831 . - . ID=Physo142141.2;Parent=Physo142141;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 236902 237010 . - 0 ID=Physo142141;Parent=Physo142141;rank=1 scaffold_108 . exon 236902 237010 . - . ID=Physo142141.1;Parent=Physo142141;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_108 ensembl protein_coding_gene 237842 238786 . + . ID=Physo142142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080071;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 237842 238786 . + . ID=Physo142142;Parent=Physo142142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 237842 237999 . + 0 ID=Physo142142;Parent=Physo142142;rank=1 scaffold_108 . exon 237842 237999 . + . ID=Physo142142.1;Parent=Physo142142;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_108 . CDS 238073 238206 . + 0 ID=Physo142142;Parent=Physo142142;rank=2 scaffold_108 . exon 238073 238206 . + . ID=Physo142142.2;Parent=Physo142142;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_108 . CDS 238279 238778 . + 0 ID=Physo142142;Parent=Physo142142;rank=3 scaffold_108 . exon 238279 238786 . + . ID=Physo142142.3;Parent=Physo142142;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_108 . repeat_region 243884 244034 . ? . description=trf scaffold_108 . repeat_region 244351 244358 . ? . description=dust scaffold_108 . repeat_region 245238 245266 . ? . description=trf scaffold_108 . repeat_region 247233 247240 . ? . description=dust scaffold_108 . repeat_region 248107 248117 . ? . description=dust scaffold_108 ensembl protein_coding_gene 241923 242712 . + . ID=Physo142143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080072;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 241923 242712 . + . ID=Physo142143;Parent=Physo142143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 241923 242060 . + 0 ID=Physo142143;Parent=Physo142143;rank=1 scaffold_108 . exon 241923 242060 . + . ID=Physo142143.1;Parent=Physo142143;constitutive=1;rank=1 scaffold_108 . CDS 242136 242171 . + 0 ID=Physo142143;Parent=Physo142143;rank=2 scaffold_108 . exon 242136 242171 . + . ID=Physo142143.2;Parent=Physo142143;constitutive=1;rank=2 scaffold_108 . CDS 242242 242349 . + 0 ID=Physo142143;Parent=Physo142143;rank=3 scaffold_108 . exon 242242 242349 . + . ID=Physo142143.3;Parent=Physo142143;constitutive=1;rank=3 scaffold_108 . CDS 242402 242484 . + 0 ID=Physo142143;Parent=Physo142143;rank=4 scaffold_108 . exon 242402 242484 . + . ID=Physo142143.4;Parent=Physo142143;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_108 . CDS 242511 242579 . + 0 ID=Physo142143;Parent=Physo142143;rank=5 scaffold_108 . exon 242511 242579 . + . ID=Physo142143.5;Parent=Physo142143;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_108 . CDS 242655 242712 . + 0 ID=Physo142143;Parent=Physo142143;rank=6 scaffold_108 . exon 242655 242712 . + . ID=Physo142143.6;Parent=Physo142143;constitutive=1;ensembl_phase=2;rank=6 scaffold_108 ensembl protein_coding_gene 244221 245883 . - . ID=Physo142144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1080073;logic_name=jgi_physo1_1 scaffold_108 ensembl transcript 244221 245883 . - . ID=Physo142144;Parent=Physo142144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_108 . CDS 244221 244345 . - 0 ID=Physo142144;Parent=Physo142144;rank=3 scaffold_108 . exon 244221 244345 . - . ID=Physo142144.3;Parent=Physo142144;constitutive=1;ensembl_phase=1;rank=3 scaffold_108 . CDS 244426 245085 . - 0 ID=Physo142144;Parent=Physo142144;rank=2 scaffold_108 . exon 244426 245085 . - . ID=Physo142144.2;Parent=Physo142144;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_108 . CDS 245226 245883 . - 0 ID=Physo142144;Parent=Physo142144;rank=1 scaffold_108 . exon 245226 245883 . - . ID=Physo142144.1;Parent=Physo142144;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_107 1 273027 scaffold_107 . biological_region 268 273 0.999 + . logic_name=eponine scaffold_107 . biological_region 2907 2911 0.999 - . logic_name=eponine scaffold_107 . biological_region 3247 3249 0.999 - . logic_name=eponine scaffold_107 . repeat_region 3426 3474 . ? . description=dust scaffold_107 . repeat_region 3426 3474 . ? . description=trf scaffold_107 . biological_region 6166 6169 0.999 - . logic_name=eponine scaffold_107 . biological_region 6741 6743 0.999 + . logic_name=eponine scaffold_107 . biological_region 6819 6822 0.999 + . logic_name=eponine scaffold_107 . biological_region 7067 7070 0.999 - . logic_name=eponine scaffold_107 . biological_region 7747 7748 0.999 + . logic_name=eponine scaffold_107 ensembl protein_coding_gene 2793 6490 . + . ID=Physo142010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070001;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 2793 6490 . + . ID=Physo142010;Parent=Physo142010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 2793 6230 . + 0 ID=Physo142010;Parent=Physo142010;rank=1 scaffold_107 . exon 2793 6490 . + . ID=Physo142010.1;Parent=Physo142010;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_107 ensembl protein_coding_gene 6639 8376 . + . ID=Physo142011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070002;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 6639 8376 . + . ID=Physo142011;Parent=Physo142011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 6639 7235 . + 0 ID=Physo142011;Parent=Physo142011;rank=1 scaffold_107 . exon 6639 7235 . + . ID=Physo142011.1;Parent=Physo142011;constitutive=1;rank=1 scaffold_107 . CDS 7288 8376 . + 0 ID=Physo142011;Parent=Physo142011;rank=2 scaffold_107 . exon 7288 8376 . + . ID=Physo142011.2;Parent=Physo142011;constitutive=1;rank=2 scaffold_107 ensembl protein_coding_gene 10390 13775 . - . ID=Physo142012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070003;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 10390 13775 . - . ID=Physo142012;Parent=Physo142012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 10390 13080 . - 0 ID=Physo142012;Parent=Physo142012;rank=4 scaffold_107 . exon 10390 13080 . - . ID=Physo142012.4;Parent=Physo142012;constitutive=1;rank=4 scaffold_107 . CDS 13174 13379 . - 0 ID=Physo142012;Parent=Physo142012;rank=3 scaffold_107 . exon 13174 13379 . - . ID=Physo142012.3;Parent=Physo142012;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 13458 13536 . - 0 ID=Physo142012;Parent=Physo142012;rank=2 scaffold_107 . exon 13458 13536 . - . ID=Physo142012.2;Parent=Physo142012;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_107 . CDS 13632 13775 . - 0 ID=Physo142012;Parent=Physo142012;rank=1 scaffold_107 . exon 13632 13775 . - . ID=Physo142012.1;Parent=Physo142012;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 15844 16959 . + . ID=Physo142013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070004;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 15844 16959 . + . ID=Physo142013;Parent=Physo142013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . exon 15844 16959 . + . ID=Physo142013.1;Parent=Physo142013;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_107 . CDS 15845 16690 . + 0 ID=Physo142013;Parent=Physo142013;rank=1 scaffold_107 ensembl protein_coding_gene 17462 19669 . - . ID=Physo142014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070005;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 17462 19669 . - . ID=Physo142014;Parent=Physo142014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 17462 18766 . - 0 ID=Physo142014;Parent=Physo142014;rank=3 scaffold_107 . exon 17462 18766 . - . ID=Physo142014.3;Parent=Physo142014;constitutive=1;rank=3 scaffold_107 . CDS 18839 18913 . - 0 ID=Physo142014;Parent=Physo142014;rank=2 scaffold_107 . exon 18839 18913 . - . ID=Physo142014.2;Parent=Physo142014;constitutive=1;rank=2 scaffold_107 . CDS 18998 19669 . - 0 ID=Physo142014;Parent=Physo142014;rank=1 scaffold_107 . exon 18998 19669 . - . ID=Physo142014.1;Parent=Physo142014;constitutive=1;rank=1 scaffold_107 . biological_region 19532 19536 0.999 + . logic_name=eponine scaffold_107 . biological_region 20353 20354 0.999 + . logic_name=eponine scaffold_107 . biological_region 21020 21025 0.999 + . logic_name=eponine scaffold_107 . biological_region 21391 21392 0.999 + . logic_name=eponine scaffold_107 . biological_region 21410 21414 0.999 + . logic_name=eponine scaffold_107 . repeat_region 21607 21614 . ? . description=dust scaffold_107 . biological_region 26065 26070 0.999 + . logic_name=eponine scaffold_107 ensembl protein_coding_gene 27887 29574 . - . ID=Physo109436;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1070001;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 27887 29574 . - . ID=Physo109436;Parent=Physo109436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . exon 27887 29574 . - . ID=Physo109436.1;Parent=Physo109436;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_107 . CDS 28045 29526 . - 0 ID=Physo109436;Parent=Physo109436;rank=1 scaffold_107 ensembl protein_coding_gene 20086 23054 . - . ID=Physo142015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070006;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 20086 23054 . - . ID=Physo142015;Parent=Physo142015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 20086 20799 . - 0 ID=Physo142015;Parent=Physo142015;rank=8 scaffold_107 . exon 20086 20799 . - . ID=Physo142015.8;Parent=Physo142015;constitutive=1;rank=8 scaffold_107 . CDS 20880 21338 . - 0 ID=Physo142015;Parent=Physo142015;rank=7 scaffold_107 . exon 20880 21338 . - . ID=Physo142015.7;Parent=Physo142015;constitutive=1;rank=7 scaffold_107 . CDS 21708 22003 . - 0 ID=Physo142015;Parent=Physo142015;rank=6 scaffold_107 . exon 21708 22003 . - . ID=Physo142015.6;Parent=Physo142015;constitutive=1;ensembl_phase=1;rank=6 scaffold_107 . CDS 22226 22346 . - 0 ID=Physo142015;Parent=Physo142015;rank=5 scaffold_107 . exon 22226 22346 . - . ID=Physo142015.5;Parent=Physo142015;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_107 . CDS 22414 22527 . - 0 ID=Physo142015;Parent=Physo142015;rank=4 scaffold_107 . exon 22414 22527 . - . ID=Physo142015.4;Parent=Physo142015;constitutive=1;rank=4 scaffold_107 . CDS 22601 22676 . - 0 ID=Physo142015;Parent=Physo142015;rank=3 scaffold_107 . exon 22601 22676 . - . ID=Physo142015.3;Parent=Physo142015;constitutive=1;ensembl_phase=2;rank=3 scaffold_107 . CDS 22901 22968 . - 0 ID=Physo142015;Parent=Physo142015;rank=2 scaffold_107 . exon 22901 22968 . - . ID=Physo142015.2;Parent=Physo142015;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_107 . CDS 23049 23054 . - 0 ID=Physo142015;Parent=Physo142015;rank=1 scaffold_107 . exon 23049 23054 . - . ID=Physo142015.1;Parent=Physo142015;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 26809 27819 . + . ID=Physo142016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070007;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 26809 27819 . + . ID=Physo142016;Parent=Physo142016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 26809 27819 . + 0 ID=Physo142016;Parent=Physo142016;rank=1 scaffold_107 . exon 26809 27819 . + . ID=Physo142016.1;Parent=Physo142016;constitutive=1;rank=1 scaffold_107 . repeat_region 31197 31378 . + . description=(TCG)n scaffold_107 . repeat_region 31299 31351 . ? . description=trf scaffold_107 ensembl protein_coding_gene 30161 31995 . - . ID=Physo142018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070009;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 30161 31995 . - . ID=Physo142018;Parent=Physo142018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 30161 31873 . - 0 ID=Physo142018;Parent=Physo142018;rank=2 scaffold_107 . exon 30161 31873 . - . ID=Physo142018.2;Parent=Physo142018;constitutive=1;rank=2 scaffold_107 . CDS 31942 31995 . - 0 ID=Physo142018;Parent=Physo142018;rank=1 scaffold_107 . exon 31942 31995 . - . ID=Physo142018.1;Parent=Physo142018;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 32356 33519 . - . ID=Physo142019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070010;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 32356 33519 . - . ID=Physo142019;Parent=Physo142019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 32356 33519 . - 0 ID=Physo142019;Parent=Physo142019;rank=1 scaffold_107 . exon 32356 33519 . - . ID=Physo142019.1;Parent=Physo142019;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 36933 39998 . + . ID=Physo158458;biotype=protein_coding;external_name=C_scaffold_107000001;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 36933 39998 . + . ID=Physo158458;Parent=Physo158458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 36933 36969 . + 0 ID=Physo158458;Parent=Physo158458;rank=1 scaffold_107 . exon 36933 36969 . + . ID=Physo158458.1;Parent=Physo158458;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 . CDS 37073 37299 . + 0 ID=Physo158458;Parent=Physo158458;rank=2 scaffold_107 . exon 37073 37299 . + . ID=Physo158458.2;Parent=Physo158458;constitutive=1;ensembl_phase=1;rank=2 scaffold_107 . CDS 37371 37448 . + 0 ID=Physo158458;Parent=Physo158458;rank=3 scaffold_107 . exon 37371 37448 . + . ID=Physo158458.3;Parent=Physo158458;constitutive=1;rank=3 scaffold_107 . CDS 38100 38507 . + 0 ID=Physo158458;Parent=Physo158458;rank=4 scaffold_107 . exon 38100 38507 . + . ID=Physo158458.4;Parent=Physo158458;constitutive=1;rank=4 scaffold_107 . CDS 38589 39392 . + 0 ID=Physo158458;Parent=Physo158458;rank=5 scaffold_107 . exon 38589 39392 . + . ID=Physo158458.5;Parent=Physo158458;constitutive=1;rank=5 scaffold_107 . CDS 39467 39646 . + 0 ID=Physo158458;Parent=Physo158458;rank=6 scaffold_107 . CDS 39727 39819 . + 0 ID=Physo158458;Parent=Physo158458;rank=7 scaffold_107 . CDS 39894 39998 . + 0 ID=Physo158458;Parent=Physo158458;rank=8 scaffold_107 . repeat_region 40244 40292 . ? . description=dust scaffold_107 . biological_region 40951 40957 0.999 + . logic_name=eponine scaffold_107 . biological_region 42300 42304 0.999 + . logic_name=eponine scaffold_107 . biological_region 42768 42768 0.999 + . logic_name=eponine scaffold_107 . biological_region 42840 42842 0.999 + . logic_name=eponine scaffold_107 . biological_region 43813 43818 0.999 - . logic_name=eponine scaffold_107 . biological_region 43824 43830 0.999 + . logic_name=eponine scaffold_107 . biological_region 43834 43839 0.999 - . logic_name=eponine scaffold_107 . biological_region 44340 44345 0.999 + . logic_name=eponine scaffold_107 . biological_region 44621 44622 0.999 - . logic_name=eponine scaffold_107 . biological_region 44673 44680 0.999 + . logic_name=eponine scaffold_107 . biological_region 44709 44714 0.999 + . logic_name=eponine scaffold_107 . biological_region 44764 44767 0.999 - . logic_name=eponine scaffold_107 . biological_region 45436 45445 0.999 - . logic_name=eponine scaffold_107 . biological_region 45507 45511 0.999 - . logic_name=eponine scaffold_107 . biological_region 45885 45885 0.999 - . logic_name=eponine scaffold_107 . biological_region 47746 47746 0.999 - . logic_name=eponine scaffold_107 ensembl protein_coding_gene 40155 41051 . - . ID=Physo142021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070012;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 40155 41051 . - . ID=Physo142021;Parent=Physo142021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 40155 40245 . - 0 ID=Physo142021;Parent=Physo142021;rank=2 scaffold_107 . exon 40155 40245 . - . ID=Physo142021.2;Parent=Physo142021;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 40324 41051 . - 0 ID=Physo142021;Parent=Physo142021;rank=1 scaffold_107 . exon 40324 41051 . - . ID=Physo142021.1;Parent=Physo142021;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 ensembl protein_coding_gene 41534 43138 . + . ID=Physo142022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070013;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 41534 43138 . + . ID=Physo142022;Parent=Physo142022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 41534 41573 . + 0 ID=Physo142022;Parent=Physo142022;rank=1 scaffold_107 . exon 41534 41573 . + . ID=Physo142022.1;Parent=Physo142022;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 . CDS 41619 41744 . + 0 ID=Physo142022;Parent=Physo142022;rank=2 scaffold_107 . exon 41619 41744 . + . ID=Physo142022.2;Parent=Physo142022;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_107 . CDS 42108 42376 . + 0 ID=Physo142022;Parent=Physo142022;rank=3 scaffold_107 . exon 42108 42376 . + . ID=Physo142022.3;Parent=Physo142022;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 42425 42934 . + 0 ID=Physo142022;Parent=Physo142022;rank=4 scaffold_107 . exon 42425 42934 . + . ID=Physo142022.4;Parent=Physo142022;constitutive=1;rank=4 scaffold_107 . CDS 43007 43138 . + 0 ID=Physo142022;Parent=Physo142022;rank=5 scaffold_107 . exon 43007 43138 . + . ID=Physo142022.5;Parent=Physo142022;constitutive=1;rank=5 scaffold_107 ensembl protein_coding_gene 44948 50246 . + . ID=Physo142023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070014;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 44948 50246 . + . ID=Physo142023;Parent=Physo142023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 44948 50104 . + 0 ID=Physo142023;Parent=Physo142023;rank=1 scaffold_107 . exon 44948 50246 . + . ID=Physo142023.1;Parent=Physo142023;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_107 . exon 39467 39646 . + . ID=Physo158458.6;Parent=Physo158458;constitutive=1;rank=6 scaffold_107 . exon 39727 39819 . + . ID=Physo158458.7;Parent=Physo158458;constitutive=1;rank=7 scaffold_107 . exon 39894 39998 . + . ID=Physo158458.8;Parent=Physo158458;constitutive=1;rank=8 scaffold_107 . repeat_region 49928 50014 . ? . description=trf scaffold_107 . repeat_region 49928 50014 . ? . description=trf scaffold_107 . biological_region 62521 62524 0.999 + . logic_name=eponine scaffold_107 . repeat_region 62842 65110 . + . description=GypsyPi-1c_I-int scaffold_107 . biological_region 62949 62950 0.999 + . logic_name=eponine scaffold_107 . biological_region 64248 64249 0.999 - . logic_name=eponine scaffold_107 . biological_region 66272 66275 0.999 - . logic_name=eponine scaffold_107 . biological_region 66633 66635 0.999 + . logic_name=eponine scaffold_107 . repeat_region 67302 67351 . ? . description=dust scaffold_107 . biological_region 67323 67326 0.999 + . logic_name=eponine scaffold_107 . biological_region 67469 67473 0.999 - . logic_name=eponine scaffold_107 ensembl protein_coding_gene 59838 60498 . - . ID=Physo142024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070015;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 59838 60498 . - . ID=Physo142024;Parent=Physo142024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 59838 60403 . - 0 ID=Physo142024;Parent=Physo142024;rank=2 scaffold_107 . exon 59838 60403 . - . ID=Physo142024.2;Parent=Physo142024;constitutive=1;ensembl_phase=1;rank=2 scaffold_107 . CDS 60483 60498 . - 0 ID=Physo142024;Parent=Physo142024;rank=1 scaffold_107 . exon 60483 60498 . - . ID=Physo142024.1;Parent=Physo142024;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 63063 65420 . + . ID=Physo142025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070016;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 63063 65420 . + . ID=Physo142025;Parent=Physo142025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 63063 65022 . + 0 ID=Physo142025;Parent=Physo142025;rank=1 scaffold_107 . exon 63063 65022 . + . ID=Physo142025.1;Parent=Physo142025;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 . CDS 65160 65373 . + 0 ID=Physo142025;Parent=Physo142025;rank=2 scaffold_107 . exon 65160 65373 . + . ID=Physo142025.2;Parent=Physo142025;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_107 . CDS 65414 65420 . + 0 ID=Physo142025;Parent=Physo142025;rank=3 scaffold_107 . exon 65414 65420 . + . ID=Physo142025.3;Parent=Physo142025;constitutive=1;ensembl_phase=2;rank=3 scaffold_107 . repeat_region 70108 70197 . ? . description=trf scaffold_107 . repeat_region 73853 73913 . ? . description=trf scaffold_107 . repeat_region 74810 74837 . ? . description=trf scaffold_107 . repeat_region 77670 77710 . ? . description=trf scaffold_107 ensembl protein_coding_gene 68479 70116 . - . ID=Physo142026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070017;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 68479 70116 . - . ID=Physo142026;Parent=Physo142026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 68479 69824 . - 0 ID=Physo142026;Parent=Physo142026;rank=2 scaffold_107 . exon 68479 69824 . - . ID=Physo142026.2;Parent=Physo142026;constitutive=1;ensembl_phase=1;rank=2 scaffold_107 . CDS 70017 70116 . - 0 ID=Physo142026;Parent=Physo142026;rank=1 scaffold_107 . exon 70017 70116 . - . ID=Physo142026.1;Parent=Physo142026;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 . repeat_region 80021 80029 . ? . description=dust scaffold_107 . repeat_region 80211 80227 . ? . description=dust scaffold_107 . biological_region 84714 84717 0.999 - . logic_name=eponine scaffold_107 . repeat_region 87681 87689 . ? . description=dust scaffold_107 ensembl protein_coding_gene 86274 89304 . - . ID=Physo142027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070018;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 86274 89304 . - . ID=Physo142027;Parent=Physo142027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 86274 86441 . - 0 ID=Physo142027;Parent=Physo142027;rank=11 scaffold_107 . exon 86274 86441 . - . ID=Physo142027.11;Parent=Physo142027;constitutive=1;rank=11 scaffold_107 . CDS 86518 86624 . - 0 ID=Physo142027;Parent=Physo142027;rank=10 scaffold_107 . exon 86518 86624 . - . ID=Physo142027.10;Parent=Physo142027;constitutive=1;ensembl_phase=1;rank=10 scaffold_107 . CDS 86661 86857 . - 0 ID=Physo142027;Parent=Physo142027;rank=9 scaffold_107 . exon 86661 86857 . - . ID=Physo142027.9;Parent=Physo142027;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_107 . CDS 86932 86991 . - 0 ID=Physo142027;Parent=Physo142027;rank=8 scaffold_107 . exon 86932 86991 . - . ID=Physo142027.8;Parent=Physo142027;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_107 . CDS 87058 87615 . - 0 ID=Physo142027;Parent=Physo142027;rank=7 scaffold_107 . exon 87058 87615 . - . ID=Physo142027.7;Parent=Physo142027;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_107 . CDS 87736 87745 . - 0 ID=Physo142027;Parent=Physo142027;rank=6 scaffold_107 . exon 87736 87745 . - . ID=Physo142027.6;Parent=Physo142027;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_107 . CDS 87828 87883 . - 0 ID=Physo142027;Parent=Physo142027;rank=5 scaffold_107 . CDS 87914 88506 . - 0 ID=Physo142027;Parent=Physo142027;rank=4 scaffold_107 . CDS 88599 88726 . - 0 ID=Physo142027;Parent=Physo142027;rank=3 scaffold_107 . CDS 88817 88876 . - 0 ID=Physo142027;Parent=Physo142027;rank=2 scaffold_107 . CDS 89124 89304 . - 0 ID=Physo142027;Parent=Physo142027;rank=1 scaffold_107 . exon 87828 87883 . - . ID=Physo142027.5;Parent=Physo142027;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_107 . exon 87914 88506 . - . ID=Physo142027.4;Parent=Physo142027;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_107 . exon 88599 88726 . - . ID=Physo142027.3;Parent=Physo142027;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . exon 88817 88876 . - . ID=Physo142027.2;Parent=Physo142027;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_107 . exon 89124 89304 . - . ID=Physo142027.1;Parent=Physo142027;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 91552 92980 . + . ID=Physo142028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070019;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 91552 92980 . + . ID=Physo142028;Parent=Physo142028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 91552 91669 . + 0 ID=Physo142028;Parent=Physo142028;rank=1 scaffold_107 . exon 91552 91669 . + . ID=Physo142028.1;Parent=Physo142028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 . CDS 91731 92077 . + 0 ID=Physo142028;Parent=Physo142028;rank=2 scaffold_107 . exon 91731 92077 . + . ID=Physo142028.2;Parent=Physo142028;constitutive=1;ensembl_phase=1;rank=2 scaffold_107 . CDS 92162 92433 . + 0 ID=Physo142028;Parent=Physo142028;rank=3 scaffold_107 . exon 92162 92433 . + . ID=Physo142028.3;Parent=Physo142028;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_107 . CDS 92522 92556 . + 0 ID=Physo142028;Parent=Physo142028;rank=4 scaffold_107 . exon 92522 92556 . + . ID=Physo142028.4;Parent=Physo142028;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_107 . CDS 92625 92667 . + 0 ID=Physo142028;Parent=Physo142028;rank=5 scaffold_107 . exon 92625 92667 . + . ID=Physo142028.5;Parent=Physo142028;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_107 . CDS 92743 92980 . + 0 ID=Physo142028;Parent=Physo142028;rank=6 scaffold_107 . exon 92743 92980 . + . ID=Physo142028.6;Parent=Physo142028;constitutive=1;ensembl_phase=2;rank=6 scaffold_107 ensembl protein_coding_gene 94217 97051 . - . ID=Physo142029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070020;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 94217 97051 . - . ID=Physo142029;Parent=Physo142029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 94217 97051 . - 0 ID=Physo142029;Parent=Physo142029;rank=1 scaffold_107 . exon 94217 97051 . - . ID=Physo142029.1;Parent=Physo142029;constitutive=1;rank=1 scaffold_107 . biological_region 101896 101903 0.999 + . logic_name=eponine scaffold_107 . biological_region 101946 101955 0.999 - . logic_name=eponine scaffold_107 . biological_region 102005 102008 0.999 + . logic_name=eponine scaffold_107 . repeat_region 103726 103764 . ? . description=trf scaffold_107 . biological_region 105796 105802 0.999 - . logic_name=eponine scaffold_107 ensembl protein_coding_gene 98367 101480 . - . ID=Physo142030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070021;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 98367 101480 . - . ID=Physo142030;Parent=Physo142030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 98367 101480 . - 0 ID=Physo142030;Parent=Physo142030;rank=1 scaffold_107 . exon 98367 101480 . - . ID=Physo142030.1;Parent=Physo142030;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 101803 102572 . - . ID=Physo142031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070022;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 101803 102572 . - . ID=Physo142031;Parent=Physo142031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 101803 102540 . - 0 ID=Physo142031;Parent=Physo142031;rank=1 scaffold_107 . exon 101803 102572 . - . ID=Physo142031.1;Parent=Physo142031;constitutive=1;ensembl_phase=-1;rank=1 scaffold_107 ensembl protein_coding_gene 105936 106630 . - . ID=Physo142034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070025;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 105936 106630 . - . ID=Physo142034;Parent=Physo142034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 105936 106473 . - 0 ID=Physo142034;Parent=Physo142034;rank=2 scaffold_107 . exon 105936 106473 . - . ID=Physo142034.2;Parent=Physo142034;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 106551 106612 . - 0 ID=Physo142034;Parent=Physo142034;rank=1 scaffold_107 . exon 106551 106630 . - . ID=Physo142034.1;Parent=Physo142034;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_107 ensembl protein_coding_gene 107067 107907 . - . ID=Physo142035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070026;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 107067 107907 . - . ID=Physo142035;Parent=Physo142035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 107067 107240 . - 0 ID=Physo142035;Parent=Physo142035;rank=4 scaffold_107 . exon 107067 107240 . - . ID=Physo142035.4;Parent=Physo142035;constitutive=1;rank=4 scaffold_107 . CDS 107317 107426 . - 0 ID=Physo142035;Parent=Physo142035;rank=3 scaffold_107 . CDS 107500 107639 . - 0 ID=Physo142035;Parent=Physo142035;rank=2 scaffold_107 . CDS 107741 107907 . - 0 ID=Physo142035;Parent=Physo142035;rank=1 scaffold_107 ensembl protein_coding_gene 103661 105809 . + . ID=Physo158460;biotype=protein_coding;external_name=C_scaffold_107000003;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 103661 105809 . + . ID=Physo158460;Parent=Physo158460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 103661 104038 . + 0 ID=Physo158460;Parent=Physo158460;rank=1 scaffold_107 . exon 103661 104038 . + . ID=Physo158460.1;Parent=Physo158460;constitutive=1;rank=1 scaffold_107 . CDS 104216 104458 . + 0 ID=Physo158460;Parent=Physo158460;rank=2 scaffold_107 . exon 104216 104458 . + . ID=Physo158460.2;Parent=Physo158460;constitutive=1;rank=2 scaffold_107 . CDS 104534 104630 . + 0 ID=Physo158460;Parent=Physo158460;rank=3 scaffold_107 . exon 104534 104630 . + . ID=Physo158460.3;Parent=Physo158460;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_107 . CDS 104707 105593 . + 0 ID=Physo158460;Parent=Physo158460;rank=4 scaffold_107 . exon 104707 105593 . + . ID=Physo158460.4;Parent=Physo158460;constitutive=1;ensembl_phase=1;rank=4 scaffold_107 . CDS 105672 105809 . + 0 ID=Physo158460;Parent=Physo158460;rank=5 scaffold_107 . exon 105672 105809 . + . ID=Physo158460.5;Parent=Physo158460;constitutive=1;rank=5 scaffold_107 ensembl protein_coding_gene 108121 109026 . - . ID=Physo109438;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1070003;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 108121 109026 . - . ID=Physo109438;Parent=Physo109438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 108121 108443 . - 0 ID=Physo109438;Parent=Physo109438;rank=3 scaffold_107 . exon 108121 108443 . - . ID=Physo109438.3;Parent=Physo109438;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 108515 108689 . - 0 ID=Physo109438;Parent=Physo109438;rank=2 scaffold_107 . exon 108515 108689 . - . ID=Physo109438.2;Parent=Physo109438;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_107 . CDS 108808 109026 . - 0 ID=Physo109438;Parent=Physo109438;rank=1 scaffold_107 . exon 108808 109026 . - . ID=Physo109438.1;Parent=Physo109438;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 109421 110155 . + . ID=Physo109439;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1070004;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 109421 110155 . + . ID=Physo109439;Parent=Physo109439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . exon 109421 110155 . + . ID=Physo109439.1;Parent=Physo109439;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_107 . CDS 109426 110046 . + 0 ID=Physo109439;Parent=Physo109439;rank=1 scaffold_107 ensembl protein_coding_gene 111583 112063 . + . ID=Physo122503;biotype=protein_coding;external_name=estExt_Genewise1.C_1070035;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 111583 112063 . + . ID=Physo122503;Parent=Physo122503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . exon 111583 111680 . + . ID=Physo122503.1;Parent=Physo122503;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_107 . CDS 111610 111680 . + 0 ID=Physo122503;Parent=Physo122503;rank=1 scaffold_107 . CDS 111749 111811 . + 0 ID=Physo122503;Parent=Physo122503;rank=2 scaffold_107 . exon 111749 111811 . + . ID=Physo122503.2;Parent=Physo122503;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_107 . CDS 111868 112063 . + 0 ID=Physo122503;Parent=Physo122503;rank=3 scaffold_107 . exon 111868 112063 . + . ID=Physo122503.3;Parent=Physo122503;constitutive=1;ensembl_phase=2;rank=3 scaffold_107 . exon 107317 107426 . - . ID=Physo142035.3;Parent=Physo142035;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . exon 107500 107639 . - . ID=Physo142035.2;Parent=Physo142035;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_107 . exon 107741 107907 . - . ID=Physo142035.1;Parent=Physo142035;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 ensembl protein_coding_gene 110319 110648 . - . ID=Physo142038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070029;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 110319 110648 . - . ID=Physo142038;Parent=Physo142038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 110319 110648 . - 0 ID=Physo142038;Parent=Physo142038;rank=1 scaffold_107 . exon 110319 110648 . - . ID=Physo142038.1;Parent=Physo142038;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 112494 113303 . + . ID=Physo142039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070030;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 112494 113303 . + . ID=Physo142039;Parent=Physo142039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 112494 113303 . + 0 ID=Physo142039;Parent=Physo142039;rank=1 scaffold_107 . exon 112494 113303 . + . ID=Physo142039.1;Parent=Physo142039;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 113510 116899 . + . ID=Physo142040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070031;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 113510 116899 . + . ID=Physo142040;Parent=Physo142040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 113510 114042 . + 0 ID=Physo142040;Parent=Physo142040;rank=1 scaffold_107 . exon 113510 114042 . + . ID=Physo142040.1;Parent=Physo142040;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 114108 115989 . + 0 ID=Physo142040;Parent=Physo142040;rank=2 scaffold_107 . exon 114108 115989 . + . ID=Physo142040.2;Parent=Physo142040;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 116055 116226 . + 0 ID=Physo142040;Parent=Physo142040;rank=3 scaffold_107 . exon 116055 116226 . + . ID=Physo142040.3;Parent=Physo142040;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_107 . CDS 116288 116379 . + 0 ID=Physo142040;Parent=Physo142040;rank=4 scaffold_107 . exon 116288 116379 . + . ID=Physo142040.4;Parent=Physo142040;constitutive=1;ensembl_phase=1;rank=4 scaffold_107 . CDS 116582 116899 . + 0 ID=Physo142040;Parent=Physo142040;rank=5 scaffold_107 . exon 116582 116899 . + . ID=Physo142040.5;Parent=Physo142040;constitutive=1;rank=5 scaffold_107 . biological_region 118114 118115 0.999 + . logic_name=eponine scaffold_107 . biological_region 118988 118990 0.999 - . logic_name=eponine scaffold_107 . biological_region 121388 121390 0.999 + . logic_name=eponine scaffold_107 . biological_region 121480 121482 0.999 - . logic_name=eponine scaffold_107 . biological_region 124457 124459 0.999 + . logic_name=eponine scaffold_107 ensembl protein_coding_gene 117165 127292 . + . ID=Physo158462;biotype=protein_coding;external_name=C_scaffold_107000005;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 117165 127292 . + . ID=Physo158462;Parent=Physo158462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 117165 117220 . + 0 ID=Physo158462;Parent=Physo158462;rank=1 scaffold_107 . exon 117165 117220 . + . ID=Physo158462.1;Parent=Physo158462;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 117295 117661 . + 0 ID=Physo158462;Parent=Physo158462;rank=2 scaffold_107 . exon 117295 117661 . + . ID=Physo158462.2;Parent=Physo158462;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 117713 118505 . + 0 ID=Physo158462;Parent=Physo158462;rank=3 scaffold_107 . exon 117713 118505 . + . ID=Physo158462.3;Parent=Physo158462;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_107 . CDS 118536 119279 . + 0 ID=Physo158462;Parent=Physo158462;rank=4 scaffold_107 . exon 118536 119279 . + . ID=Physo158462.4;Parent=Physo158462;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_107 . CDS 119346 119770 . + 0 ID=Physo158462;Parent=Physo158462;rank=5 scaffold_107 . exon 119346 119770 . + . ID=Physo158462.5;Parent=Physo158462;constitutive=1;ensembl_phase=1;rank=5 scaffold_107 . CDS 119804 120069 . + 0 ID=Physo158462;Parent=Physo158462;rank=6 scaffold_107 . exon 119804 120069 . + . ID=Physo158462.6;Parent=Physo158462;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_107 . CDS 120478 120676 . + 0 ID=Physo158462;Parent=Physo158462;rank=7 scaffold_107 . exon 120478 120676 . + . ID=Physo158462.7;Parent=Physo158462;constitutive=1;ensembl_phase=2;rank=7 scaffold_107 . CDS 120728 120914 . + 0 ID=Physo158462;Parent=Physo158462;rank=8 scaffold_107 . exon 120728 120914 . + . ID=Physo158462.8;Parent=Physo158462;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_107 . CDS 120936 121119 . + 0 ID=Physo158462;Parent=Physo158462;rank=9 scaffold_107 . exon 120936 121119 . + . ID=Physo158462.9;Parent=Physo158462;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_107 . CDS 121255 121601 . + 0 ID=Physo158462;Parent=Physo158462;rank=10 scaffold_107 . exon 121255 121601 . + . ID=Physo158462.10;Parent=Physo158462;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_107 . CDS 121653 121865 . + 0 ID=Physo158462;Parent=Physo158462;rank=11 scaffold_107 . exon 121653 121865 . + . ID=Physo158462.11;Parent=Physo158462;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_107 . CDS 121896 122041 . + 0 ID=Physo158462;Parent=Physo158462;rank=12 scaffold_107 . exon 121896 122041 . + . ID=Physo158462.12;Parent=Physo158462;constitutive=1;ensembl_phase=1;rank=12 scaffold_107 . CDS 122180 122632 . + 0 ID=Physo158462;Parent=Physo158462;rank=13 scaffold_107 . exon 122180 122632 . + . ID=Physo158462.13;Parent=Physo158462;constitutive=1;rank=13 scaffold_107 . CDS 122675 123167 . + 0 ID=Physo158462;Parent=Physo158462;rank=14 scaffold_107 . exon 122675 123167 . + . ID=Physo158462.14;Parent=Physo158462;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_107 . CDS 123333 123463 . + 0 ID=Physo158462;Parent=Physo158462;rank=15 scaffold_107 . exon 123333 123463 . + . ID=Physo158462.15;Parent=Physo158462;constitutive=1;ensembl_phase=1;rank=15 scaffold_107 . CDS 123485 123656 . + 0 ID=Physo158462;Parent=Physo158462;rank=16 scaffold_107 . exon 123485 123656 . + . ID=Physo158462.16;Parent=Physo158462;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_107 . CDS 123705 123855 . + 0 ID=Physo158462;Parent=Physo158462;rank=17 scaffold_107 . exon 123705 123855 . + . ID=Physo158462.17;Parent=Physo158462;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=17 scaffold_107 . CDS 123907 124085 . + 0 ID=Physo158462;Parent=Physo158462;rank=18 scaffold_107 . exon 123907 124085 . + . ID=Physo158462.18;Parent=Physo158462;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=18 scaffold_107 . CDS 124323 125083 . + 0 ID=Physo158462;Parent=Physo158462;rank=19 scaffold_107 . exon 124323 125083 . + . ID=Physo158462.19;Parent=Physo158462;constitutive=1;ensembl_phase=1;rank=19 scaffold_107 . CDS 125149 125714 . + 0 ID=Physo158462;Parent=Physo158462;rank=20 scaffold_107 . exon 125149 125714 . + . ID=Physo158462.20;Parent=Physo158462;constitutive=1;ensembl_end_phase=2;rank=20 scaffold_107 . CDS 125802 126384 . + 0 ID=Physo158462;Parent=Physo158462;rank=21 scaffold_107 . exon 125802 126384 . + . ID=Physo158462.21;Parent=Physo158462;constitutive=1;ensembl_phase=2;rank=21 scaffold_107 . CDS 126458 126577 . + 0 ID=Physo158462;Parent=Physo158462;rank=22 scaffold_107 . exon 126458 126577 . + . ID=Physo158462.22;Parent=Physo158462;constitutive=1;rank=22 scaffold_107 . CDS 126653 127227 . + 0 ID=Physo158462;Parent=Physo158462;rank=23 scaffold_107 . exon 126653 127227 . + . ID=Physo158462.23;Parent=Physo158462;constitutive=1;ensembl_end_phase=2;rank=23 scaffold_107 . CDS 127274 127292 . + 0 ID=Physo158462;Parent=Physo158462;rank=24 scaffold_107 . repeat_region 129337 129370 . ? . description=dust scaffold_107 . repeat_region 129681 129711 . ? . description=dust scaffold_107 . repeat_region 129681 129711 . ? . description=trf scaffold_107 . repeat_region 135227 135234 . ? . description=dust scaffold_107 ensembl protein_coding_gene 133314 135072 . - . ID=Physo109440;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1070005;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 133314 135072 . - . ID=Physo109440;Parent=Physo109440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 133314 134645 . - 0 ID=Physo109440;Parent=Physo109440;rank=2 scaffold_107 . exon 133314 134645 . - . ID=Physo109440.2;Parent=Physo109440;constitutive=1;rank=2 scaffold_107 . CDS 134764 135072 . - 0 ID=Physo109440;Parent=Physo109440;rank=1 scaffold_107 . exon 134764 135072 . - . ID=Physo109440.1;Parent=Physo109440;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 127869 129734 . - . ID=Physo142042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070033;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 127869 129734 . - . ID=Physo142042;Parent=Physo142042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 127869 127964 . - 0 ID=Physo142042;Parent=Physo142042;rank=7 scaffold_107 . exon 127869 127964 . - . ID=Physo142042.7;Parent=Physo142042;constitutive=1;rank=7 scaffold_107 . CDS 128038 128108 . - 0 ID=Physo142042;Parent=Physo142042;rank=6 scaffold_107 . exon 128038 128108 . - . ID=Physo142042.6;Parent=Physo142042;constitutive=1;ensembl_phase=1;rank=6 scaffold_107 . CDS 128179 128793 . - 0 ID=Physo142042;Parent=Physo142042;rank=5 scaffold_107 . exon 128179 128793 . - . ID=Physo142042.5;Parent=Physo142042;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_107 . CDS 128886 129046 . - 0 ID=Physo142042;Parent=Physo142042;rank=4 scaffold_107 . exon 128886 129046 . - . ID=Physo142042.4;Parent=Physo142042;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_107 . CDS 129137 129296 . - 0 ID=Physo142042;Parent=Physo142042;rank=3 scaffold_107 . exon 129137 129296 . - . ID=Physo142042.3;Parent=Physo142042;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_107 . CDS 129378 129445 . - 0 ID=Physo142042;Parent=Physo142042;rank=2 scaffold_107 . exon 129378 129445 . - . ID=Physo142042.2;Parent=Physo142042;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 129649 129734 . - 0 ID=Physo142042;Parent=Physo142042;rank=1 scaffold_107 . exon 129649 129734 . - . ID=Physo142042.1;Parent=Physo142042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 ensembl protein_coding_gene 130373 131589 . - . ID=Physo142043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070034;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 130373 131589 . - . ID=Physo142043;Parent=Physo142043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 130373 130978 . - 0 ID=Physo142043;Parent=Physo142043;rank=4 scaffold_107 . exon 130373 130978 . - . ID=Physo142043.4;Parent=Physo142043;constitutive=1;rank=4 scaffold_107 . CDS 131044 131332 . - 0 ID=Physo142043;Parent=Physo142043;rank=3 scaffold_107 . exon 131044 131332 . - . ID=Physo142043.3;Parent=Physo142043;constitutive=1;ensembl_phase=2;rank=3 scaffold_107 . CDS 131392 131416 . - 0 ID=Physo142043;Parent=Physo142043;rank=2 scaffold_107 . exon 131392 131416 . - . ID=Physo142043.2;Parent=Physo142043;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_107 . CDS 131532 131589 . - 0 ID=Physo142043;Parent=Physo142043;rank=1 scaffold_107 . exon 131532 131589 . - . ID=Physo142043.1;Parent=Physo142043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 135276 138736 . + . ID=Physo142045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070036;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 135276 138736 . + . ID=Physo142045;Parent=Physo142045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 135276 136175 . + 0 ID=Physo142045;Parent=Physo142045;rank=1 scaffold_107 . exon 135276 136175 . + . ID=Physo142045.1;Parent=Physo142045;constitutive=1;rank=1 scaffold_107 . CDS 136250 136828 . + 0 ID=Physo142045;Parent=Physo142045;rank=2 scaffold_107 . exon 136250 136828 . + . ID=Physo142045.2;Parent=Physo142045;constitutive=1;rank=2 scaffold_107 . CDS 136895 138736 . + 0 ID=Physo142045;Parent=Physo142045;rank=3 scaffold_107 . exon 127274 127292 . + . ID=Physo158462.24;Parent=Physo158462;constitutive=1;ensembl_phase=2;rank=24 scaffold_107 ensembl protein_coding_gene 132069 133222 . + . ID=Physo158466;biotype=protein_coding;external_name=C_scaffold_107000009;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 132069 133222 . + . ID=Physo158466;Parent=Physo158466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 132069 132170 . + 0 ID=Physo158466;Parent=Physo158466;rank=1 scaffold_107 . exon 132069 132170 . + . ID=Physo158466.1;Parent=Physo158466;constitutive=1;rank=1 scaffold_107 . CDS 132239 132418 . + 0 ID=Physo158466;Parent=Physo158466;rank=2 scaffold_107 . exon 132239 132418 . + . ID=Physo158466.2;Parent=Physo158466;constitutive=1;rank=2 scaffold_107 . CDS 132483 132561 . + 0 ID=Physo158466;Parent=Physo158466;rank=3 scaffold_107 . exon 132483 132561 . + . ID=Physo158466.3;Parent=Physo158466;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_107 . CDS 132631 132764 . + 0 ID=Physo158466;Parent=Physo158466;rank=4 scaffold_107 . exon 132631 132764 . + . ID=Physo158466.4;Parent=Physo158466;constitutive=1;ensembl_phase=1;rank=4 scaffold_107 . CDS 132838 132915 . + 0 ID=Physo158466;Parent=Physo158466;rank=5 scaffold_107 . exon 132838 132915 . + . ID=Physo158466.5;Parent=Physo158466;constitutive=1;rank=5 scaffold_107 . CDS 132986 133222 . + 0 ID=Physo158466;Parent=Physo158466;rank=6 scaffold_107 . exon 132986 133222 . + . ID=Physo158466.6;Parent=Physo158466;constitutive=1;rank=6 scaffold_107 . biological_region 139496 139500 0.999 - . logic_name=eponine scaffold_107 . biological_region 139719 139721 0.999 + . logic_name=eponine scaffold_107 . biological_region 139724 139728 0.999 - . logic_name=eponine scaffold_107 . biological_region 139729 139730 0.999 + . logic_name=eponine scaffold_107 . biological_region 139758 139763 0.999 + . logic_name=eponine scaffold_107 . biological_region 139813 139820 0.999 - . logic_name=eponine scaffold_107 . biological_region 139926 139930 0.999 - . logic_name=eponine scaffold_107 . biological_region 139935 139939 0.999 + . logic_name=eponine scaffold_107 . biological_region 139969 139969 0.999 - . logic_name=eponine scaffold_107 . biological_region 140006 140009 0.999 - . logic_name=eponine scaffold_107 . biological_region 140056 140058 0.999 - . logic_name=eponine scaffold_107 . biological_region 140639 140644 0.999 + . logic_name=eponine scaffold_107 . biological_region 142474 142475 0.999 + . logic_name=eponine scaffold_107 . biological_region 145960 145962 0.999 - . logic_name=eponine scaffold_107 . biological_region 146046 146050 0.999 + . logic_name=eponine scaffold_107 . biological_region 146114 146119 0.999 - . logic_name=eponine scaffold_107 . exon 136895 138736 . + . ID=Physo142045.3;Parent=Physo142045;constitutive=1;rank=3 scaffold_107 ensembl protein_coding_gene 139480 140102 . - . ID=Physo142046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070037;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 139480 140102 . - . ID=Physo142046;Parent=Physo142046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . exon 139480 139503 . - . ID=Physo142046.3;Parent=Physo142046;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_107 . CDS 139482 139503 . - 0 ID=Physo142046;Parent=Physo142046;rank=3 scaffold_107 . CDS 139545 139575 . - 0 ID=Physo142046;Parent=Physo142046;rank=2 scaffold_107 . exon 139545 139575 . - . ID=Physo142046.2;Parent=Physo142046;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_107 . CDS 139653 140100 . - 0 ID=Physo142046;Parent=Physo142046;rank=1 scaffold_107 . exon 139653 140102 . - . ID=Physo142046.1;Parent=Physo142046;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_107 ensembl protein_coding_gene 141332 146292 . - . ID=Physo142047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070038;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 141332 146292 . - . ID=Physo142047;Parent=Physo142047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 141332 142142 . - 0 ID=Physo142047;Parent=Physo142047;rank=5 scaffold_107 . exon 141332 142142 . - . ID=Physo142047.5;Parent=Physo142047;constitutive=1;ensembl_phase=2;rank=5 scaffold_107 . CDS 142227 142315 . - 0 ID=Physo142047;Parent=Physo142047;rank=4 scaffold_107 . exon 142227 142315 . - . ID=Physo142047.4;Parent=Physo142047;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_107 . CDS 142398 143197 . - 0 ID=Physo142047;Parent=Physo142047;rank=3 scaffold_107 . exon 142398 143197 . - . ID=Physo142047.3;Parent=Physo142047;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 143302 143591 . - 0 ID=Physo142047;Parent=Physo142047;rank=2 scaffold_107 . exon 143302 143591 . - . ID=Physo142047.2;Parent=Physo142047;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 143813 146292 . - 0 ID=Physo142047;Parent=Physo142047;rank=1 scaffold_107 . exon 143813 146292 . - . ID=Physo142047.1;Parent=Physo142047;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . repeat_region 147677 147753 . ? . description=trf scaffold_107 . repeat_region 147733 147868 . ? . description=trf scaffold_107 . repeat_region 150704 150716 . ? . description=dust scaffold_107 . repeat_region 151281 151329 . ? . description=trf scaffold_107 . repeat_region 151426 151439 . ? . description=dust scaffold_107 . repeat_region 151998 152052 . ? . description=trf scaffold_107 . repeat_region 153393 153455 . ? . description=trf scaffold_107 . repeat_region 153430 153477 . ? . description=trf scaffold_107 . repeat_region 155853 155943 . ? . description=trf scaffold_107 . biological_region 161982 161987 0.999 - . logic_name=eponine scaffold_107 ensembl protein_coding_gene 160784 162040 . - . ID=Physo142048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070039;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 160784 162040 . - . ID=Physo142048;Parent=Physo142048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 160784 161242 . - 0 ID=Physo142048;Parent=Physo142048;rank=2 scaffold_107 . exon 160784 161242 . - . ID=Physo142048.2;Parent=Physo142048;constitutive=1;rank=2 scaffold_107 . CDS 161516 162040 . - 0 ID=Physo142048;Parent=Physo142048;rank=1 scaffold_107 . exon 161516 162040 . - . ID=Physo142048.1;Parent=Physo142048;constitutive=1;rank=1 scaffold_107 . repeat_region 169099 169123 . ? . description=dust scaffold_107 . repeat_region 169408 170593 . ? . description=dust scaffold_107 . repeat_region 171837 171885 . ? . description=trf scaffold_107 . repeat_region 172343 172367 . ? . description=dust scaffold_107 . biological_region 177115 177116 0.999 + . logic_name=eponine scaffold_107 . repeat_region 193324 193343 . ? . description=dust scaffold_107 . repeat_region 193324 193343 . ? . description=trf scaffold_107 ensembl protein_coding_gene 191265 192104 . + . ID=Physo109441;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1070006;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 191265 192104 . + . ID=Physo109441;Parent=Physo109441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 191265 192104 . + 0 ID=Physo109441;Parent=Physo109441;rank=1 scaffold_107 . exon 191265 192104 . + . ID=Physo109441.1;Parent=Physo109441;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 190998 191111 . + . ID=Physo122520;biotype=protein_coding;external_name=estExt_Genewise1.C_1070052;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 190998 191111 . + . ID=Physo122520;Parent=Physo122520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . exon 190998 191111 . + . ID=Physo122520.1;Parent=Physo122520;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_107 . CDS 191014 191109 . + 0 ID=Physo122520;Parent=Physo122520;rank=1 scaffold_107 ensembl protein_coding_gene 186437 186766 . + . ID=Physo142049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070040;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 186437 186766 . + . ID=Physo142049;Parent=Physo142049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 186437 186766 . + 0 ID=Physo142049;Parent=Physo142049;rank=1 scaffold_107 . exon 186437 186766 . + . ID=Physo142049.1;Parent=Physo142049;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 187138 190994 . + . ID=Physo142050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070041;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 187138 190994 . + . ID=Physo142050;Parent=Physo142050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 187138 187565 . + 0 ID=Physo142050;Parent=Physo142050;rank=1 scaffold_107 . exon 187138 187565 . + . ID=Physo142050.1;Parent=Physo142050;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 187789 188278 . + 0 ID=Physo142050;Parent=Physo142050;rank=2 scaffold_107 . exon 187789 188278 . + . ID=Physo142050.2;Parent=Physo142050;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 188346 188743 . + 0 ID=Physo142050;Parent=Physo142050;rank=3 scaffold_107 . exon 188346 188743 . + . ID=Physo142050.3;Parent=Physo142050;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_107 . CDS 188943 189000 . + 0 ID=Physo142050;Parent=Physo142050;rank=4 scaffold_107 . exon 188943 189000 . + . ID=Physo142050.4;Parent=Physo142050;constitutive=1;ensembl_phase=2;rank=4 scaffold_107 . CDS 189066 189272 . + 0 ID=Physo142050;Parent=Physo142050;rank=5 scaffold_107 . exon 189066 189272 . + . ID=Physo142050.5;Parent=Physo142050;constitutive=1;rank=5 scaffold_107 . CDS 189614 189824 . + 0 ID=Physo142050;Parent=Physo142050;rank=6 scaffold_107 . exon 189614 189824 . + . ID=Physo142050.6;Parent=Physo142050;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_107 . CDS 189888 190538 . + 0 ID=Physo142050;Parent=Physo142050;rank=7 scaffold_107 . exon 189888 190538 . + . ID=Physo142050.7;Parent=Physo142050;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_107 . CDS 190597 190994 . + 0 ID=Physo142050;Parent=Physo142050;rank=8 scaffold_107 . exon 190597 190994 . + . ID=Physo142050.8;Parent=Physo142050;constitutive=1;ensembl_phase=1;rank=8 scaffold_107 . biological_region 198164 198165 0.999 + . logic_name=eponine scaffold_107 . biological_region 200004 200006 0.999 - . logic_name=eponine scaffold_107 . biological_region 201332 201336 0.999 - . logic_name=eponine scaffold_107 . repeat_region 206906 206913 . ? . description=dust scaffold_107 . repeat_region 208697 208879 . - . description=GypsyPi-1c_LTR scaffold_107 . repeat_region 209001 209312 . - . description=GypsyPi-1c_I-int scaffold_107 . repeat_region 209892 213746 . - . description=GypsyPi-1c_I-int scaffold_107 . repeat_region 213733 216309 . - . description=GypsyPi-1c_I-int scaffold_107 . repeat_region 214227 214325 . ? . description=trf scaffold_107 . repeat_region 214308 214475 . ? . description=trf scaffold_107 ensembl protein_coding_gene 207459 208691 . - . ID=Physo142052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070043;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 207459 208691 . - . ID=Physo142052;Parent=Physo142052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 207459 207630 . - 0 ID=Physo142052;Parent=Physo142052;rank=4 scaffold_107 . exon 207459 207630 . - . ID=Physo142052.4;Parent=Physo142052;constitutive=1;ensembl_phase=2;rank=4 scaffold_107 . CDS 207713 208012 . - 0 ID=Physo142052;Parent=Physo142052;rank=3 scaffold_107 . exon 207713 208012 . - . ID=Physo142052.3;Parent=Physo142052;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_107 . CDS 208084 208378 . - 0 ID=Physo142052;Parent=Physo142052;rank=2 scaffold_107 . exon 208084 208378 . - . ID=Physo142052.2;Parent=Physo142052;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_107 . CDS 208493 208691 . - 0 ID=Physo142052;Parent=Physo142052;rank=1 scaffold_107 . exon 208493 208691 . - . ID=Physo142052.1;Parent=Physo142052;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 209565 211363 . + . ID=Physo142053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070044;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 209565 211363 . + . ID=Physo142053;Parent=Physo142053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 209565 209887 . + 0 ID=Physo142053;Parent=Physo142053;rank=1 scaffold_107 . exon 209565 209887 . + . ID=Physo142053.1;Parent=Physo142053;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 209975 211076 . + 0 ID=Physo142053;Parent=Physo142053;rank=2 scaffold_107 . exon 209975 211076 . + . ID=Physo142053.2;Parent=Physo142053;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 211124 211363 . + 0 ID=Physo142053;Parent=Physo142053;rank=3 scaffold_107 . exon 211124 211363 . + . ID=Physo142053.3;Parent=Physo142053;constitutive=1;rank=3 scaffold_107 ensembl protein_coding_gene 211838 216222 . - . ID=Physo142054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070045;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 211838 216222 . - . ID=Physo142054;Parent=Physo142054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 211838 212555 . - 0 ID=Physo142054;Parent=Physo142054;rank=5 scaffold_107 . exon 211838 212555 . - . ID=Physo142054.5;Parent=Physo142054;constitutive=1;ensembl_phase=2;rank=5 scaffold_107 . CDS 212705 213726 . - 0 ID=Physo142054;Parent=Physo142054;rank=4 scaffold_107 . exon 212705 213726 . - . ID=Physo142054.4;Parent=Physo142054;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_107 . CDS 213770 215048 . - 0 ID=Physo142054;Parent=Physo142054;rank=3 scaffold_107 . exon 213770 215048 . - . ID=Physo142054.3;Parent=Physo142054;constitutive=1;ensembl_phase=2;rank=3 scaffold_107 . CDS 215222 215705 . - 0 ID=Physo142054;Parent=Physo142054;rank=2 scaffold_107 . CDS 215733 216222 . - 0 ID=Physo142054;Parent=Physo142054;rank=1 scaffold_107 . biological_region 215788 215789 0.999 + . logic_name=eponine scaffold_107 . biological_region 215806 215808 0.999 - . logic_name=eponine scaffold_107 . biological_region 216065 216066 0.999 - . logic_name=eponine scaffold_107 . biological_region 219505 219512 0.999 + . logic_name=eponine scaffold_107 . biological_region 220761 220763 0.999 + . logic_name=eponine scaffold_107 . biological_region 220875 220877 0.999 - . logic_name=eponine scaffold_107 . exon 215222 215705 . - . ID=Physo142054.2;Parent=Physo142054;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_107 . exon 215733 216222 . - . ID=Physo142054.1;Parent=Physo142054;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 ensembl protein_coding_gene 217651 218706 . + . ID=Physo142055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070046;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 217651 218706 . + . ID=Physo142055;Parent=Physo142055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 217651 218706 . + 0 ID=Physo142055;Parent=Physo142055;rank=1 scaffold_107 . exon 217651 218706 . + . ID=Physo142055.1;Parent=Physo142055;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 218975 220163 . + . ID=Physo142056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070047;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 218975 220163 . + . ID=Physo142056;Parent=Physo142056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 218975 219043 . + 0 ID=Physo142056;Parent=Physo142056;rank=1 scaffold_107 . exon 218975 219043 . + . ID=Physo142056.1;Parent=Physo142056;constitutive=1;rank=1 scaffold_107 . CDS 219111 219326 . + 0 ID=Physo142056;Parent=Physo142056;rank=2 scaffold_107 . exon 219111 219326 . + . ID=Physo142056.2;Parent=Physo142056;constitutive=1;rank=2 scaffold_107 . CDS 219396 220163 . + 0 ID=Physo142056;Parent=Physo142056;rank=3 scaffold_107 . exon 219396 220163 . + . ID=Physo142056.3;Parent=Physo142056;constitutive=1;rank=3 scaffold_107 ensembl protein_coding_gene 220234 220584 . - . ID=Physo142057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070048;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 220234 220584 . - . ID=Physo142057;Parent=Physo142057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 220234 220338 . - 0 ID=Physo142057;Parent=Physo142057;rank=2 scaffold_107 . exon 220234 220338 . - . ID=Physo142057.2;Parent=Physo142057;constitutive=1;rank=2 scaffold_107 . CDS 220387 220584 . - 0 ID=Physo142057;Parent=Physo142057;rank=1 scaffold_107 . exon 220387 220584 . - . ID=Physo142057.1;Parent=Physo142057;constitutive=1;rank=1 scaffold_107 . repeat_region 231300 231326 . ? . description=trf scaffold_107 . repeat_region 231327 231419 . ? . description=trf scaffold_107 ensembl protein_coding_gene 225708 226221 . + . ID=Physo142058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070049;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 225708 226221 . + . ID=Physo142058;Parent=Physo142058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 225708 225839 . + 0 ID=Physo142058;Parent=Physo142058;rank=1 scaffold_107 . exon 225708 225839 . + . ID=Physo142058.1;Parent=Physo142058;constitutive=1;rank=1 scaffold_107 . CDS 225910 226221 . + 0 ID=Physo142058;Parent=Physo142058;rank=2 scaffold_107 . exon 225910 226221 . + . ID=Physo142058.2;Parent=Physo142058;constitutive=1;rank=2 scaffold_107 ensembl protein_coding_gene 227140 227931 . + . ID=Physo142059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070050;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 227140 227931 . + . ID=Physo142059;Parent=Physo142059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 227140 227931 . + 0 ID=Physo142059;Parent=Physo142059;rank=1 scaffold_107 . exon 227140 227931 . + . ID=Physo142059.1;Parent=Physo142059;constitutive=1;rank=1 scaffold_107 . repeat_region 234171 234179 . ? . description=dust scaffold_107 . repeat_region 234370 234379 . ? . description=dust scaffold_107 . biological_region 234770 234773 0.999 + . logic_name=eponine scaffold_107 . biological_region 234841 234845 0.999 - . logic_name=eponine scaffold_107 ensembl protein_coding_gene 234655 236000 . + . ID=Physo142060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070051;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 234655 236000 . + . ID=Physo142060;Parent=Physo142060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 234655 235785 . + 0 ID=Physo142060;Parent=Physo142060;rank=1 scaffold_107 . exon 234655 236000 . + . ID=Physo142060.1;Parent=Physo142060;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_107 ensembl protein_coding_gene 236063 240677 . - . ID=Physo142061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070052;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 236063 240677 . - . ID=Physo142061;Parent=Physo142061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 236063 236206 . - 0 ID=Physo142061;Parent=Physo142061;rank=4 scaffold_107 . exon 236063 236206 . - . ID=Physo142061.4;Parent=Physo142061;constitutive=1;rank=4 scaffold_107 . CDS 236283 236704 . - 0 ID=Physo142061;Parent=Physo142061;rank=3 scaffold_107 . exon 236283 236704 . - . ID=Physo142061.3;Parent=Physo142061;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 236750 238413 . - 0 ID=Physo142061;Parent=Physo142061;rank=2 scaffold_107 . exon 236750 238413 . - . ID=Physo142061.2;Parent=Physo142061;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 238594 240677 . - 0 ID=Physo142061;Parent=Physo142061;rank=1 scaffold_107 . exon 238594 240677 . - . ID=Physo142061.1;Parent=Physo142061;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 ensembl protein_coding_gene 241033 244265 . - . ID=Physo158468;biotype=protein_coding;external_name=C_scaffold_107000011;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 241033 244265 . - . ID=Physo158468;Parent=Physo158468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 241033 241038 . - 0 ID=Physo158468;Parent=Physo158468;rank=5 scaffold_107 . exon 241033 241038 . - . ID=Physo158468.5;Parent=Physo158468;constitutive=1;rank=5 scaffold_107 . CDS 241317 241427 . - 0 ID=Physo158468;Parent=Physo158468;rank=4 scaffold_107 . exon 241317 241427 . - . ID=Physo158468.4;Parent=Physo158468;constitutive=1;rank=4 scaffold_107 . CDS 241524 241654 . - 0 ID=Physo158468;Parent=Physo158468;rank=3 scaffold_107 . exon 241524 241654 . - . ID=Physo158468.3;Parent=Physo158468;constitutive=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 242021 243648 . - 0 ID=Physo158468;Parent=Physo158468;rank=2 scaffold_107 . exon 242021 243648 . - . ID=Physo158468.2;Parent=Physo158468;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 243676 244265 . - 0 ID=Physo158468;Parent=Physo158468;rank=1 scaffold_107 . exon 243676 244265 . - . ID=Physo158468.1;Parent=Physo158468;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . repeat_region 250094 250129 . ? . description=trf scaffold_107 ensembl protein_coding_gene 244459 246720 . + . ID=Physo142063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070054;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 244459 246720 . + . ID=Physo142063;Parent=Physo142063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 244459 246720 . + 0 ID=Physo142063;Parent=Physo142063;rank=1 scaffold_107 . exon 244459 246720 . + . ID=Physo142063.1;Parent=Physo142063;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 246792 248606 . - . ID=Physo142064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070055;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 246792 248606 . - . ID=Physo142064;Parent=Physo142064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 246792 248606 . - 0 ID=Physo142064;Parent=Physo142064;rank=1 scaffold_107 . exon 246792 248606 . - . ID=Physo142064.1;Parent=Physo142064;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 249583 251668 . + . ID=Physo142065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070056;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 249583 251668 . + . ID=Physo142065;Parent=Physo142065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 249583 249719 . + 0 ID=Physo142065;Parent=Physo142065;rank=1 scaffold_107 . exon 249583 249719 . + . ID=Physo142065.1;Parent=Physo142065;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 249781 251668 . + 0 ID=Physo142065;Parent=Physo142065;rank=2 scaffold_107 . exon 249781 251668 . + . ID=Physo142065.2;Parent=Physo142065;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 ensembl protein_coding_gene 252562 253257 . + . ID=Physo142066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070057;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 252562 253257 . + . ID=Physo142066;Parent=Physo142066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 252562 253257 . + 0 ID=Physo142066;Parent=Physo142066;rank=1 scaffold_107 . exon 252562 253257 . + . ID=Physo142066.1;Parent=Physo142066;constitutive=1;rank=1 scaffold_107 ensembl protein_coding_gene 253412 254819 . - . ID=Physo158473;biotype=protein_coding;external_name=C_scaffold_107000016;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 253412 254819 . - . ID=Physo158473;Parent=Physo158473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 253412 253418 . - 0 ID=Physo158473;Parent=Physo158473;rank=2 scaffold_107 . exon 253412 253418 . - . ID=Physo158473.2;Parent=Physo158473;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 253453 254819 . - 0 ID=Physo158473;Parent=Physo158473;rank=1 scaffold_107 . exon 253453 254819 . - . ID=Physo158473.1;Parent=Physo158473;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . repeat_region 258251 258433 . + . description=GypsyPi-1c_LTR scaffold_107 . repeat_region 258434 260991 . + . description=GypsyPi-1c_I-int scaffold_107 . biological_region 258678 258679 0.999 + . logic_name=eponine scaffold_107 . biological_region 258936 258938 0.999 + . logic_name=eponine scaffold_107 . biological_region 258955 258956 0.999 - . logic_name=eponine scaffold_107 . repeat_region 261002 261272 . + . description=GypsyPi-1c_I-int scaffold_107 . biological_region 261085 261085 0.999 - . logic_name=eponine scaffold_107 . repeat_region 261274 261323 . ? . description=dust scaffold_107 . repeat_region 261359 264701 . + . description=GypsyPi-1c_I-int scaffold_107 . biological_region 262634 262637 0.999 - . logic_name=eponine scaffold_107 ensembl protein_coding_gene 254982 257784 . + . ID=Physo142068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070059;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 254982 257784 . + . ID=Physo142068;Parent=Physo142068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 254982 255106 . + 0 ID=Physo142068;Parent=Physo142068;rank=1 scaffold_107 . exon 254982 255106 . + . ID=Physo142068.1;Parent=Physo142068;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 . CDS 255296 257006 . + 0 ID=Physo142068;Parent=Physo142068;rank=2 scaffold_107 . exon 255296 257006 . + . ID=Physo142068.2;Parent=Physo142068;constitutive=1;ensembl_phase=2;rank=2 scaffold_107 . CDS 257084 257262 . + 0 ID=Physo142068;Parent=Physo142068;rank=3 scaffold_107 . exon 257084 257262 . + . ID=Physo142068.3;Parent=Physo142068;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_107 . CDS 257337 257784 . + 0 ID=Physo142068;Parent=Physo142068;rank=4 scaffold_107 . exon 257337 257784 . + . ID=Physo142068.4;Parent=Physo142068;constitutive=1;ensembl_phase=2;rank=4 scaffold_107 ensembl protein_coding_gene 258521 262765 . + . ID=Physo142069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070060;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 258521 262765 . + . ID=Physo142069;Parent=Physo142069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 258521 259010 . + 0 ID=Physo142069;Parent=Physo142069;rank=1 scaffold_107 . exon 258521 259010 . + . ID=Physo142069.1;Parent=Physo142069;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_107 . CDS 259038 259472 . + 0 ID=Physo142069;Parent=Physo142069;rank=2 scaffold_107 . exon 259038 259472 . + . ID=Physo142069.2;Parent=Physo142069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_107 . CDS 259601 261262 . + 0 ID=Physo142069;Parent=Physo142069;rank=3 scaffold_107 . exon 259601 261262 . + . ID=Physo142069.3;Parent=Physo142069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_107 . CDS 261460 261898 . + 0 ID=Physo142069;Parent=Physo142069;rank=4 scaffold_107 . exon 261460 261898 . + . ID=Physo142069.4;Parent=Physo142069;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_107 . CDS 262048 262765 . + 0 ID=Physo142069;Parent=Physo142069;rank=5 scaffold_107 . exon 262048 262765 . + . ID=Physo142069.5;Parent=Physo142069;constitutive=1;ensembl_phase=2;rank=5 scaffold_107 ensembl protein_coding_gene 263065 265405 . - . ID=Physo142070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070061;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 263065 265405 . - . ID=Physo142070;Parent=Physo142070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . CDS 263065 264247 . - 0 ID=Physo142070;Parent=Physo142070;rank=3 scaffold_107 . exon 263065 264247 . - . ID=Physo142070.3;Parent=Physo142070;constitutive=1;ensembl_phase=2;rank=3 scaffold_107 . CDS 264295 264930 . - 0 ID=Physo142070;Parent=Physo142070;rank=2 scaffold_107 . CDS 264969 265405 . - 0 ID=Physo142070;Parent=Physo142070;rank=1 scaffold_107 . repeat_region 269292 269398 . + . description=Polinton-1_PI scaffold_107 . repeat_region 269424 269625 . + . description=Polinton-1_PI scaffold_107 . repeat_region 269803 269832 . + . description=Polinton-1_PI scaffold_107 . repeat_region 271712 273027 . + . description=Polinton-1_PI scaffold_107 . exon 264295 264930 . - . ID=Physo142070.2;Parent=Physo142070;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_107 . exon 264969 265405 . - . ID=Physo142070.1;Parent=Physo142070;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_107 ensembl protein_coding_gene 269455 270289 . + . ID=Physo142071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1070062;logic_name=jgi_physo1_1 scaffold_107 ensembl transcript 269455 270289 . + . ID=Physo142071;Parent=Physo142071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_107 . exon 269455 270142 . + . ID=Physo142071.1;Parent=Physo142071;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_107 . CDS 269461 270142 . + 0 ID=Physo142071;Parent=Physo142071;rank=1 scaffold_107 . CDS 270240 270289 . + 0 ID=Physo142071;Parent=Physo142071;rank=2 scaffold_107 . exon 270240 270289 . + . ID=Physo142071.2;Parent=Physo142071;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_104 1 274236 scaffold_104 . biological_region 565 565 0.999 - . logic_name=eponine scaffold_104 . biological_region 2189 2190 0.999 + . logic_name=eponine scaffold_104 . repeat_region 8150 8190 . ? . description=trf scaffold_104 ensembl tRNA_gene 823 894 . + . ID=EPrPSOG00000000001;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_104 ensembl transcript 823 894 . + . ID=EPrPSOT00000000001;Parent=EPrPSOG00000000001;biotype=tRNA;logic_name=ncrna_eg scaffold_104 ensembl tRNA_gene 1859 1930 . - . ID=EPrPSOG00000000064;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_104 ensembl transcript 1859 1930 . - . ID=EPrPSOT00000000064;Parent=EPrPSOG00000000064;biotype=tRNA;logic_name=ncrna_eg scaffold_104 ensembl tRNA_gene 643 714 . + . ID=EPrPSOG00000000153;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_104 ensembl transcript 643 714 . + . ID=EPrPSOT00000000153;Parent=EPrPSOG00000000153;biotype=tRNA;logic_name=ncrna_eg scaffold_104 ensembl tRNA_gene 134 205 . + . ID=EPrPSOG00000000188;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_104 ensembl transcript 134 205 . + . ID=EPrPSOT00000000188;Parent=EPrPSOG00000000188;biotype=tRNA;logic_name=ncrna_eg scaffold_104 ensembl tRNA_gene 2039 2110 . - . ID=EPrPSOG00000000286;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_104 ensembl transcript 2039 2110 . - . ID=EPrPSOT00000000286;Parent=EPrPSOG00000000286;biotype=tRNA;logic_name=ncrna_eg scaffold_104 . exon 823 894 . + . ID=EPrPSOE00000000001;Parent=EPrPSOT00000000001;constitutive=1;rank=1 scaffold_104 . exon 1859 1930 . - . ID=EPrPSOE00000000064;Parent=EPrPSOT00000000064;constitutive=1;rank=1 scaffold_104 . exon 643 714 . + . ID=EPrPSOE00000000153;Parent=EPrPSOT00000000153;constitutive=1;rank=1 scaffold_104 . exon 134 205 . + . ID=EPrPSOE00000000188;Parent=EPrPSOT00000000188;constitutive=1;rank=1 scaffold_104 . exon 2039 2110 . - . ID=EPrPSOE00000000286;Parent=EPrPSOT00000000286;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 5205 5465 . - . ID=Physo122319;biotype=protein_coding;external_name=estExt_Genewise1.C_1040001;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 5205 5465 . - . ID=Physo122319;Parent=Physo122319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 5205 5426 . - 0 ID=Physo122319;Parent=Physo122319;rank=1 scaffold_104 . exon 5205 5465 . - . ID=Physo122319.1;Parent=Physo122319;constitutive=1;ensembl_phase=-1;rank=1 scaffold_104 ensembl protein_coding_gene 8081 9073 . - . ID=Physo141817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040001;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 8081 9073 . - . ID=Physo141817;Parent=Physo141817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 8081 9073 . - 0 ID=Physo141817;Parent=Physo141817;rank=1 scaffold_104 . exon 8081 9073 . - . ID=Physo141817.1;Parent=Physo141817;constitutive=1;rank=1 scaffold_104 . repeat_region 10204 10253 . ? . description=dust scaffold_104 . repeat_region 11253 11376 . ? . description=dust scaffold_104 . repeat_region 12208 12215 . ? . description=dust scaffold_104 . repeat_region 13575 16046 . + . description=GypsyPi-1c_I-int scaffold_104 . repeat_region 16047 18330 . ? . description=dust scaffold_104 . repeat_region 18333 18461 . + . description=GypsyPi-1c_I-int scaffold_104 . repeat_region 18513 18825 . + . description=GypsyPi-1c_I-int scaffold_104 . repeat_region 19394 19716 . + . description=GypsyPi-1c_I-int scaffold_104 ensembl protein_coding_gene 11035 11448 . - . ID=Physo141818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040002;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 11035 11448 . - . ID=Physo141818;Parent=Physo141818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 11035 11448 . - 0 ID=Physo141818;Parent=Physo141818;rank=1 scaffold_104 . exon 11035 11448 . - . ID=Physo141818.1;Parent=Physo141818;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 13542 15303 . + . ID=Physo141819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040003;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 13542 15303 . + . ID=Physo141819;Parent=Physo141819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 13542 14013 . + 0 ID=Physo141819;Parent=Physo141819;rank=1 scaffold_104 . exon 13542 14013 . + . ID=Physo141819.1;Parent=Physo141819;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 . CDS 14181 14465 . + 0 ID=Physo141819;Parent=Physo141819;rank=2 scaffold_104 . exon 14181 14465 . + . ID=Physo141819.2;Parent=Physo141819;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_104 . CDS 14620 15182 . + 0 ID=Physo141819;Parent=Physo141819;rank=3 scaffold_104 . exon 14620 15182 . + . ID=Physo141819.3;Parent=Physo141819;constitutive=1;ensembl_phase=1;rank=3 scaffold_104 . CDS 15229 15303 . + 0 ID=Physo141819;Parent=Physo141819;rank=4 scaffold_104 . exon 15229 15303 . + . ID=Physo141819.4;Parent=Physo141819;constitutive=1;rank=4 scaffold_104 ensembl protein_coding_gene 18454 19530 . - . ID=Physo141820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040004;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 18454 19530 . - . ID=Physo141820;Parent=Physo141820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 18454 19530 . - 0 ID=Physo141820;Parent=Physo141820;rank=1 scaffold_104 . exon 18454 19530 . - . ID=Physo141820.1;Parent=Physo141820;constitutive=1;rank=1 scaffold_104 . repeat_region 19717 20019 . + . description=GypsyPi-1c_LTR scaffold_104 . biological_region 24337 24340 0.999 - . logic_name=eponine scaffold_104 . biological_region 24448 24450 0.999 - . logic_name=eponine scaffold_104 . biological_region 24724 24724 0.999 - . logic_name=eponine scaffold_104 . biological_region 25064 25069 0.999 + . logic_name=eponine scaffold_104 . biological_region 25087 25087 0.999 + . logic_name=eponine scaffold_104 . biological_region 25096 25103 0.999 - . logic_name=eponine scaffold_104 . biological_region 25184 25188 0.999 - . logic_name=eponine scaffold_104 . biological_region 25631 25633 0.999 - . logic_name=eponine scaffold_104 . biological_region 25644 25648 0.999 + . logic_name=eponine scaffold_104 . biological_region 25669 25670 0.999 + . logic_name=eponine scaffold_104 . biological_region 27480 27485 0.999 + . logic_name=eponine scaffold_104 . biological_region 28095 28100 0.999 - . logic_name=eponine scaffold_104 . biological_region 28152 28153 0.999 + . logic_name=eponine scaffold_104 . biological_region 28172 28173 0.999 - . logic_name=eponine scaffold_104 . biological_region 28202 28207 0.999 - . logic_name=eponine scaffold_104 . biological_region 28259 28264 0.999 + . logic_name=eponine scaffold_104 . biological_region 28431 28432 0.999 + . logic_name=eponine scaffold_104 . biological_region 28433 28439 0.999 - . logic_name=eponine scaffold_104 . biological_region 28490 28490 0.999 + . logic_name=eponine scaffold_104 . biological_region 28508 28517 0.999 + . logic_name=eponine scaffold_104 . biological_region 28518 28518 0.999 - . logic_name=eponine scaffold_104 . biological_region 28539 28545 0.999 - . logic_name=eponine scaffold_104 . biological_region 28585 28591 0.999 - . logic_name=eponine scaffold_104 . biological_region 28626 28628 0.999 - . logic_name=eponine scaffold_104 . biological_region 28642 28643 0.999 - . logic_name=eponine scaffold_104 . biological_region 28752 28753 0.999 - . logic_name=eponine scaffold_104 . biological_region 29164 29168 0.999 - . logic_name=eponine scaffold_104 ensembl protein_coding_gene 21603 22018 . + . ID=Physo109426;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1040001;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 21603 22018 . + . ID=Physo109426;Parent=Physo109426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 21603 21960 . + 0 ID=Physo109426;Parent=Physo109426;rank=1 scaffold_104 . exon 21603 21960 . + . ID=Physo109426.1;Parent=Physo109426;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 . CDS 21984 22018 . + 0 ID=Physo109426;Parent=Physo109426;rank=2 scaffold_104 . exon 21984 22018 . + . ID=Physo109426.2;Parent=Physo109426;constitutive=1;ensembl_phase=1;rank=2 scaffold_104 ensembl protein_coding_gene 23439 25233 . - . ID=Physo141822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040006;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 23439 25233 . - . ID=Physo141822;Parent=Physo141822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 23439 23710 . - 0 ID=Physo141822;Parent=Physo141822;rank=4 scaffold_104 . exon 23439 23710 . - . ID=Physo141822.4;Parent=Physo141822;constitutive=1;ensembl_phase=1;rank=4 scaffold_104 . CDS 23749 23756 . - 0 ID=Physo141822;Parent=Physo141822;rank=3 scaffold_104 . exon 23749 23756 . - . ID=Physo141822.3;Parent=Physo141822;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_104 . CDS 23956 24024 . - 0 ID=Physo141822;Parent=Physo141822;rank=2 scaffold_104 . exon 23956 24024 . - . ID=Physo141822.2;Parent=Physo141822;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_104 . CDS 24134 25233 . - 0 ID=Physo141822;Parent=Physo141822;rank=1 scaffold_104 . exon 24134 25233 . - . ID=Physo141822.1;Parent=Physo141822;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 ensembl protein_coding_gene 26180 27049 . + . ID=Physo141823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040007;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 26180 27049 . + . ID=Physo141823;Parent=Physo141823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 26180 27049 . + 0 ID=Physo141823;Parent=Physo141823;rank=1 scaffold_104 . exon 26180 27049 . + . ID=Physo141823.1;Parent=Physo141823;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 27597 28904 . - . ID=Physo141824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040008;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 27597 28904 . - . ID=Physo141824;Parent=Physo141824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . exon 27597 28904 . - . ID=Physo141824.1;Parent=Physo141824;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_104 . CDS 27598 28902 . - 0 ID=Physo141824;Parent=Physo141824;rank=1 scaffold_104 ensembl protein_coding_gene 37998 38445 . - . ID=Physo141827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040011;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 37998 38445 . - . ID=Physo141827;Parent=Physo141827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 37998 38399 . - 0 ID=Physo141827;Parent=Physo141827;rank=1 scaffold_104 . exon 37998 38445 . - . ID=Physo141827.1;Parent=Physo141827;constitutive=1;ensembl_phase=-1;rank=1 scaffold_104 ensembl protein_coding_gene 38635 39975 . - . ID=Physo141828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040012;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 38635 39975 . - . ID=Physo141828;Parent=Physo141828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 38635 39975 . - 0 ID=Physo141828;Parent=Physo141828;rank=1 scaffold_104 . exon 38635 39975 . - . ID=Physo141828.1;Parent=Physo141828;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 31289 32628 . + . ID=Physo158405;biotype=protein_coding;external_name=C_scaffold_104000001;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 31289 32628 . + . ID=Physo158405;Parent=Physo158405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 31289 31474 . + 0 ID=Physo158405;Parent=Physo158405;rank=1 scaffold_104 . exon 31289 31474 . + . ID=Physo158405.1;Parent=Physo158405;constitutive=1;rank=1 scaffold_104 . CDS 31557 31760 . + 0 ID=Physo158405;Parent=Physo158405;rank=2 scaffold_104 . exon 31557 31760 . + . ID=Physo158405.2;Parent=Physo158405;constitutive=1;rank=2 scaffold_104 . CDS 31852 32006 . + 0 ID=Physo158405;Parent=Physo158405;rank=3 scaffold_104 . exon 31852 32006 . + . ID=Physo158405.3;Parent=Physo158405;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_104 . CDS 32086 32276 . + 0 ID=Physo158405;Parent=Physo158405;rank=4 scaffold_104 . exon 32086 32276 . + . ID=Physo158405.4;Parent=Physo158405;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_104 . CDS 32360 32628 . + 0 ID=Physo158405;Parent=Physo158405;rank=5 scaffold_104 . exon 32360 32628 . + . ID=Physo158405.5;Parent=Physo158405;constitutive=1;ensembl_phase=1;rank=5 scaffold_104 ensembl protein_coding_gene 32849 34549 . - . ID=Physo158406;biotype=protein_coding;external_name=C_scaffold_104000002;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 32849 34549 . - . ID=Physo158406;Parent=Physo158406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 32849 34549 . - 0 ID=Physo158406;Parent=Physo158406;rank=1 scaffold_104 . exon 32849 34549 . - . ID=Physo158406.1;Parent=Physo158406;constitutive=1;rank=1 scaffold_104 . repeat_region 39477 39516 . ? . description=dust scaffold_104 . repeat_region 39477 39516 . ? . description=trf scaffold_104 . biological_region 42324 42325 0.999 - . logic_name=eponine scaffold_104 . biological_region 42879 42884 0.999 + . logic_name=eponine scaffold_104 . biological_region 43238 43242 0.999 - . logic_name=eponine scaffold_104 . repeat_region 46296 46333 . ? . description=trf scaffold_104 . repeat_region 46296 46339 . ? . description=trf scaffold_104 . biological_region 46778 46779 0.999 + . logic_name=eponine scaffold_104 . repeat_region 47443 47450 . ? . description=dust scaffold_104 ensembl protein_coding_gene 41806 42353 . - . ID=Physo122334;biotype=protein_coding;external_name=estExt_Genewise1.C_1040016;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 41806 42353 . - . ID=Physo122334;Parent=Physo122334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 41806 41953 . - 0 ID=Physo122334;Parent=Physo122334;rank=2 scaffold_104 . exon 41806 41953 . - . ID=Physo122334.2;Parent=Physo122334;constitutive=1;ensembl_phase=2;rank=2 scaffold_104 . CDS 42025 42332 . - 0 ID=Physo122334;Parent=Physo122334;rank=1 scaffold_104 . exon 42025 42353 . - . ID=Physo122334.1;Parent=Physo122334;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_104 ensembl protein_coding_gene 42785 43492 . - . ID=Physo141830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040014;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 42785 43492 . - . ID=Physo141830;Parent=Physo141830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 42785 43492 . - 0 ID=Physo141830;Parent=Physo141830;rank=1 scaffold_104 . exon 42785 43492 . - . ID=Physo141830.1;Parent=Physo141830;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 46355 47939 . + . ID=Physo141831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040015;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 46355 47939 . + . ID=Physo141831;Parent=Physo141831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 46355 46491 . + 0 ID=Physo141831;Parent=Physo141831;rank=1 scaffold_104 . exon 46355 46491 . + . ID=Physo141831.1;Parent=Physo141831;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 . CDS 46565 47363 . + 0 ID=Physo141831;Parent=Physo141831;rank=2 scaffold_104 . exon 46565 47363 . + . ID=Physo141831.2;Parent=Physo141831;constitutive=1;ensembl_phase=2;rank=2 scaffold_104 . CDS 47460 47547 . + 0 ID=Physo141831;Parent=Physo141831;rank=3 scaffold_104 . exon 47460 47547 . + . ID=Physo141831.3;Parent=Physo141831;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_104 . CDS 47677 47786 . + 0 ID=Physo141831;Parent=Physo141831;rank=4 scaffold_104 . exon 47677 47939 . + . ID=Physo141831.4;Parent=Physo141831;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_104 ensembl protein_coding_gene 48044 49007 . - . ID=Physo141832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040016;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 48044 49007 . - . ID=Physo141832;Parent=Physo141832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 48044 48613 . - 0 ID=Physo141832;Parent=Physo141832;rank=2 scaffold_104 . exon 48044 48613 . - . ID=Physo141832.2;Parent=Physo141832;constitutive=1;rank=2 scaffold_104 . CDS 48693 49007 . - 0 ID=Physo141832;Parent=Physo141832;rank=1 scaffold_104 . exon 48693 49007 . - . ID=Physo141832.1;Parent=Physo141832;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 52215 67117 . - . ID=Physo141833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040017;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 52215 67117 . - . ID=Physo141833;Parent=Physo141833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 52215 52423 . - 0 ID=Physo141833;Parent=Physo141833;rank=7 scaffold_104 . exon 52215 52423 . - . ID=Physo141833.7;Parent=Physo141833;constitutive=1;ensembl_phase=1;rank=7 scaffold_104 . CDS 52499 65363 . - 0 ID=Physo141833;Parent=Physo141833;rank=6 scaffold_104 . exon 52499 65363 . - . ID=Physo141833.6;Parent=Physo141833;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_104 . CDS 65520 66001 . - 0 ID=Physo141833;Parent=Physo141833;rank=5 scaffold_104 . CDS 66276 66368 . - 0 ID=Physo141833;Parent=Physo141833;rank=4 scaffold_104 . CDS 66481 66579 . - 0 ID=Physo141833;Parent=Physo141833;rank=3 scaffold_104 . CDS 66686 66824 . - 0 ID=Physo141833;Parent=Physo141833;rank=2 scaffold_104 . CDS 66890 67117 . - 0 ID=Physo141833;Parent=Physo141833;rank=1 scaffold_104 . biological_region 61880 61880 0.999 - . logic_name=eponine scaffold_104 . biological_region 64182 64185 0.999 - . logic_name=eponine scaffold_104 . biological_region 64265 64268 0.999 - . logic_name=eponine scaffold_104 . repeat_region 66262 66270 . ? . description=dust scaffold_104 . repeat_region 66403 66414 . ? . description=dust scaffold_104 . biological_region 67143 67148 0.999 - . logic_name=eponine scaffold_104 . biological_region 67251 67252 0.999 + . logic_name=eponine scaffold_104 . biological_region 67525 67529 0.999 + . logic_name=eponine scaffold_104 . repeat_region 68066 68093 . ? . description=trf scaffold_104 . repeat_region 68340 68368 . ? . description=dust scaffold_104 . biological_region 68343 68345 0.999 + . logic_name=eponine scaffold_104 . repeat_region 68433 68441 . ? . description=dust scaffold_104 . biological_region 68525 68526 0.999 + . logic_name=eponine scaffold_104 . exon 65520 66001 . - . ID=Physo141833.5;Parent=Physo141833;constitutive=1;ensembl_phase=1;rank=5 scaffold_104 . exon 66276 66368 . - . ID=Physo141833.4;Parent=Physo141833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_104 . exon 66481 66579 . - . ID=Physo141833.3;Parent=Physo141833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_104 . exon 66686 66824 . - . ID=Physo141833.2;Parent=Physo141833;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_104 . exon 66890 67117 . - . ID=Physo141833.1;Parent=Physo141833;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 72966 74026 . + . ID=Physo109427;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1040002;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 72966 74026 . + . ID=Physo109427;Parent=Physo109427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . exon 72966 73059 . + . ID=Physo109427.1;Parent=Physo109427;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_104 . CDS 73017 73059 . + 0 ID=Physo109427;Parent=Physo109427;rank=1 scaffold_104 . CDS 73261 73380 . + 0 ID=Physo109427;Parent=Physo109427;rank=2 scaffold_104 . exon 73261 73380 . + . ID=Physo109427.2;Parent=Physo109427;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_104 . CDS 73465 73880 . + 0 ID=Physo109427;Parent=Physo109427;rank=3 scaffold_104 . exon 73465 74026 . + . ID=Physo109427.3;Parent=Physo109427;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_104 ensembl protein_coding_gene 68789 70165 . + . ID=Physo141834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040018;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 68789 70165 . + . ID=Physo141834;Parent=Physo141834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 68789 69133 . + 0 ID=Physo141834;Parent=Physo141834;rank=1 scaffold_104 . exon 68789 69133 . + . ID=Physo141834.1;Parent=Physo141834;constitutive=1;rank=1 scaffold_104 . CDS 69219 69317 . + 0 ID=Physo141834;Parent=Physo141834;rank=2 scaffold_104 . exon 69219 69317 . + . ID=Physo141834.2;Parent=Physo141834;constitutive=1;rank=2 scaffold_104 . CDS 69392 69613 . + 0 ID=Physo141834;Parent=Physo141834;rank=3 scaffold_104 . exon 69392 69613 . + . ID=Physo141834.3;Parent=Physo141834;constitutive=1;rank=3 scaffold_104 . CDS 69689 69796 . + 0 ID=Physo141834;Parent=Physo141834;rank=4 scaffold_104 . exon 69689 69796 . + . ID=Physo141834.4;Parent=Physo141834;constitutive=1;rank=4 scaffold_104 . CDS 69872 70165 . + 0 ID=Physo141834;Parent=Physo141834;rank=5 scaffold_104 . exon 69872 70165 . + . ID=Physo141834.5;Parent=Physo141834;constitutive=1;rank=5 scaffold_104 ensembl protein_coding_gene 71848 72742 . - . ID=Physo141835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040019;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 71848 72742 . - . ID=Physo141835;Parent=Physo141835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 71848 71904 . - 0 ID=Physo141835;Parent=Physo141835;rank=3 scaffold_104 . exon 71848 71904 . - . ID=Physo141835.3;Parent=Physo141835;constitutive=1;rank=3 scaffold_104 . CDS 71993 72172 . - 0 ID=Physo141835;Parent=Physo141835;rank=2 scaffold_104 . exon 71993 72172 . - . ID=Physo141835.2;Parent=Physo141835;constitutive=1;rank=2 scaffold_104 . CDS 72239 72742 . - 0 ID=Physo141835;Parent=Physo141835;rank=1 scaffold_104 . exon 72239 72742 . - . ID=Physo141835.1;Parent=Physo141835;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 74337 77903 . + . ID=Physo141837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040021;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 74337 77903 . + . ID=Physo141837;Parent=Physo141837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 74337 77903 . + 0 ID=Physo141837;Parent=Physo141837;rank=1 scaffold_104 . exon 74337 77903 . + . ID=Physo141837.1;Parent=Physo141837;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 78115 81244 . + . ID=Physo141838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040022;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 78115 81244 . + . ID=Physo141838;Parent=Physo141838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 78115 79620 . + 0 ID=Physo141838;Parent=Physo141838;rank=1 scaffold_104 . exon 78115 79620 . + . ID=Physo141838.1;Parent=Physo141838;constitutive=1;rank=1 scaffold_104 . CDS 79696 79752 . + 0 ID=Physo141838;Parent=Physo141838;rank=2 scaffold_104 . CDS 79821 80081 . + 0 ID=Physo141838;Parent=Physo141838;rank=3 scaffold_104 . CDS 80158 80596 . + 0 ID=Physo141838;Parent=Physo141838;rank=4 scaffold_104 . CDS 80674 80778 . + 0 ID=Physo141838;Parent=Physo141838;rank=5 scaffold_104 . CDS 80859 81244 . + 0 ID=Physo141838;Parent=Physo141838;rank=6 scaffold_104 . biological_region 81775 81777 0.999 + . logic_name=eponine scaffold_104 . biological_region 81796 81802 0.999 + . logic_name=eponine scaffold_104 . biological_region 82531 82540 0.999 - . logic_name=eponine scaffold_104 . biological_region 84260 84265 0.999 - . logic_name=eponine scaffold_104 . biological_region 85535 85535 0.999 - . logic_name=eponine scaffold_104 . biological_region 85553 85561 0.999 - . logic_name=eponine scaffold_104 . biological_region 85554 85556 0.999 + . logic_name=eponine scaffold_104 . biological_region 85575 85579 0.999 - . logic_name=eponine scaffold_104 . biological_region 85584 85589 0.999 + . logic_name=eponine scaffold_104 . biological_region 85768 85772 0.999 + . logic_name=eponine scaffold_104 . biological_region 85805 85812 0.999 - . logic_name=eponine scaffold_104 . biological_region 85940 85941 0.999 + . logic_name=eponine scaffold_104 . biological_region 86017 86024 0.999 - . logic_name=eponine scaffold_104 . biological_region 86070 86072 0.999 - . logic_name=eponine scaffold_104 . biological_region 86098 86102 0.999 + . logic_name=eponine scaffold_104 . biological_region 86122 86125 0.999 + . logic_name=eponine scaffold_104 . biological_region 86272 86272 0.999 - . logic_name=eponine scaffold_104 . biological_region 86328 86329 0.999 + . logic_name=eponine scaffold_104 . exon 79696 79752 . + . ID=Physo141838.2;Parent=Physo141838;constitutive=1;rank=2 scaffold_104 . exon 79821 80081 . + . ID=Physo141838.3;Parent=Physo141838;constitutive=1;rank=3 scaffold_104 . exon 80158 80596 . + . ID=Physo141838.4;Parent=Physo141838;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_104 . exon 80674 80778 . + . ID=Physo141838.5;Parent=Physo141838;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_104 . exon 80859 81244 . + . ID=Physo141838.6;Parent=Physo141838;constitutive=1;ensembl_phase=1;rank=6 scaffold_104 ensembl protein_coding_gene 81440 83553 . + . ID=Physo141839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040023;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 81440 83553 . + . ID=Physo141839;Parent=Physo141839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 81440 83296 . + 0 ID=Physo141839;Parent=Physo141839;rank=1 scaffold_104 . exon 81440 83296 . + . ID=Physo141839.1;Parent=Physo141839;constitutive=1;rank=1 scaffold_104 . CDS 83377 83553 . + 0 ID=Physo141839;Parent=Physo141839;rank=2 scaffold_104 . exon 83377 83553 . + . ID=Physo141839.2;Parent=Physo141839;constitutive=1;rank=2 scaffold_104 ensembl protein_coding_gene 83743 84207 . - . ID=Physo141840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040024;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 83743 84207 . - . ID=Physo141840;Parent=Physo141840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 83743 84207 . - 0 ID=Physo141840;Parent=Physo141840;rank=1 scaffold_104 . exon 83743 84207 . - . ID=Physo141840.1;Parent=Physo141840;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 84486 85010 . + . ID=Physo141841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040025;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 84486 85010 . + . ID=Physo141841;Parent=Physo141841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 84486 85010 . + 0 ID=Physo141841;Parent=Physo141841;rank=1 scaffold_104 . exon 84486 85010 . + . ID=Physo141841.1;Parent=Physo141841;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 85443 86789 . + . ID=Physo141842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040026;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 85443 86789 . + . ID=Physo141842;Parent=Physo141842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 85443 86789 . + 0 ID=Physo141842;Parent=Physo141842;rank=1 scaffold_104 . exon 85443 86789 . + . ID=Physo141842.1;Parent=Physo141842;constitutive=1;rank=1 scaffold_104 . repeat_region 90706 90716 . ? . description=dust scaffold_104 . repeat_region 92815 92956 . ? . description=trf scaffold_104 . repeat_region 92850 92956 . ? . description=trf scaffold_104 . repeat_region 94800 94985 . + . description=Polinton-1_PI scaffold_104 . repeat_region 95127 95193 . + . description=Polinton-1_PI scaffold_104 ensembl protein_coding_gene 89059 89469 . + . ID=Physo141843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040027;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 89059 89469 . + . ID=Physo141843;Parent=Physo141843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 89059 89469 . + 0 ID=Physo141843;Parent=Physo141843;rank=1 scaffold_104 . exon 89059 89469 . + . ID=Physo141843.1;Parent=Physo141843;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 90001 90411 . - . ID=Physo141844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040028;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 90001 90411 . - . ID=Physo141844;Parent=Physo141844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 90001 90411 . - 0 ID=Physo141844;Parent=Physo141844;rank=1 scaffold_104 . exon 90001 90411 . - . ID=Physo141844.1;Parent=Physo141844;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 96014 96973 . - . ID=Physo141845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040029;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 96014 96973 . - . ID=Physo141845;Parent=Physo141845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 96014 96973 . - 0 ID=Physo141845;Parent=Physo141845;rank=1 scaffold_104 . exon 96014 96973 . - . ID=Physo141845.1;Parent=Physo141845;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 97506 99676 . + . ID=Physo141846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040030;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 97506 99676 . + . ID=Physo141846;Parent=Physo141846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 97506 98681 . + 0 ID=Physo141846;Parent=Physo141846;rank=1 scaffold_104 . exon 97506 98681 . + . ID=Physo141846.1;Parent=Physo141846;constitutive=1;rank=1 scaffold_104 . CDS 98750 99676 . + 0 ID=Physo141846;Parent=Physo141846;rank=2 scaffold_104 . biological_region 99505 99510 0.999 + . logic_name=eponine scaffold_104 . biological_region 101052 101054 0.999 - . logic_name=eponine scaffold_104 . biological_region 101393 101397 0.999 - . logic_name=eponine scaffold_104 . biological_region 102510 102512 0.999 + . logic_name=eponine scaffold_104 . biological_region 102541 102548 0.999 - . logic_name=eponine scaffold_104 . biological_region 102676 102677 0.999 + . logic_name=eponine scaffold_104 . biological_region 102992 102996 0.999 + . logic_name=eponine scaffold_104 . biological_region 103139 103144 0.999 - . logic_name=eponine scaffold_104 . exon 98750 99676 . + . ID=Physo141846.2;Parent=Physo141846;constitutive=1;rank=2 scaffold_104 ensembl protein_coding_gene 99767 104120 . - . ID=Physo141847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040031;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 99767 104120 . - . ID=Physo141847;Parent=Physo141847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 99767 102025 . - 0 ID=Physo141847;Parent=Physo141847;rank=6 scaffold_104 . exon 99767 102025 . - . ID=Physo141847.6;Parent=Physo141847;constitutive=1;rank=6 scaffold_104 . CDS 102086 102418 . - 0 ID=Physo141847;Parent=Physo141847;rank=5 scaffold_104 . exon 102086 102418 . - . ID=Physo141847.5;Parent=Physo141847;constitutive=1;rank=5 scaffold_104 . CDS 102910 103114 . - 0 ID=Physo141847;Parent=Physo141847;rank=4 scaffold_104 . exon 102910 103114 . - . ID=Physo141847.4;Parent=Physo141847;constitutive=1;ensembl_phase=2;rank=4 scaffold_104 . CDS 103191 103372 . - 0 ID=Physo141847;Parent=Physo141847;rank=3 scaffold_104 . exon 103191 103372 . - . ID=Physo141847.3;Parent=Physo141847;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_104 . CDS 103444 103817 . - 0 ID=Physo141847;Parent=Physo141847;rank=2 scaffold_104 . exon 103444 103817 . - . ID=Physo141847.2;Parent=Physo141847;constitutive=1;ensembl_phase=1;rank=2 scaffold_104 . CDS 104009 104120 . - 0 ID=Physo141847;Parent=Physo141847;rank=1 scaffold_104 . exon 104009 104120 . - . ID=Physo141847.1;Parent=Physo141847;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 ensembl protein_coding_gene 104344 105516 . - . ID=Physo141848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040032;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 104344 105516 . - . ID=Physo141848;Parent=Physo141848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 104344 105516 . - 0 ID=Physo141848;Parent=Physo141848;rank=1 scaffold_104 . exon 104344 105516 . - . ID=Physo141848.1;Parent=Physo141848;constitutive=1;rank=1 scaffold_104 . repeat_region 109707 109755 . ? . description=trf scaffold_104 . repeat_region 113231 113268 . ? . description=trf scaffold_104 ensembl protein_coding_gene 113377 114342 . - . ID=Physo122343;biotype=protein_coding;external_name=estExt_Genewise1.C_1040025;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 113377 114342 . - . ID=Physo122343;Parent=Physo122343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 113377 114228 . - 0 ID=Physo122343;Parent=Physo122343;rank=1 scaffold_104 . exon 113377 114342 . - . ID=Physo122343.1;Parent=Physo122343;constitutive=1;ensembl_phase=-1;rank=1 scaffold_104 . biological_region 121281 121282 0.999 + . logic_name=eponine scaffold_104 . biological_region 121342 121349 0.999 - . logic_name=eponine scaffold_104 . biological_region 121397 121407 0.999 + . logic_name=eponine scaffold_104 . biological_region 121477 121479 0.999 - . logic_name=eponine scaffold_104 . biological_region 121565 121571 0.999 - . logic_name=eponine scaffold_104 . biological_region 121619 121626 0.999 + . logic_name=eponine scaffold_104 . biological_region 121649 121653 0.999 - . logic_name=eponine scaffold_104 . biological_region 121654 121661 0.999 + . logic_name=eponine scaffold_104 . biological_region 121681 121687 0.999 + . logic_name=eponine scaffold_104 . biological_region 121704 121710 0.999 + . logic_name=eponine scaffold_104 . biological_region 121721 121722 0.999 - . logic_name=eponine scaffold_104 . biological_region 121734 121736 0.999 - . logic_name=eponine scaffold_104 . biological_region 121774 121785 0.999 - . logic_name=eponine scaffold_104 . biological_region 121804 121810 0.999 - . logic_name=eponine scaffold_104 . biological_region 121823 121832 0.999 - . logic_name=eponine scaffold_104 . biological_region 121845 121851 0.999 - . logic_name=eponine scaffold_104 . repeat_region 122670 122717 . ? . description=dust scaffold_104 . biological_region 122721 122724 0.999 + . logic_name=eponine scaffold_104 . biological_region 122777 122783 0.999 + . logic_name=eponine scaffold_104 . biological_region 122880 122883 0.999 + . logic_name=eponine scaffold_104 . biological_region 123022 123023 0.999 - . logic_name=eponine scaffold_104 ensembl protein_coding_gene 120146 121803 . - . ID=Physo141850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040034;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 120146 121803 . - . ID=Physo141850;Parent=Physo141850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 120146 120175 . - 0 ID=Physo141850;Parent=Physo141850;rank=2 scaffold_104 . exon 120146 120175 . - . ID=Physo141850.2;Parent=Physo141850;constitutive=1;rank=2 scaffold_104 . CDS 120238 121803 . - 0 ID=Physo141850;Parent=Physo141850;rank=1 scaffold_104 . exon 120238 121803 . - . ID=Physo141850.1;Parent=Physo141850;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 122665 123516 . + . ID=Physo158409;biotype=protein_coding;external_name=C_scaffold_104000005;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 122665 123516 . + . ID=Physo158409;Parent=Physo158409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 122665 122808 . + 0 ID=Physo158409;Parent=Physo158409;rank=1 scaffold_104 . exon 122665 122808 . + . ID=Physo158409.1;Parent=Physo158409;constitutive=1;rank=1 scaffold_104 . CDS 122830 123386 . + 0 ID=Physo158409;Parent=Physo158409;rank=2 scaffold_104 . exon 122830 123386 . + . ID=Physo158409.2;Parent=Physo158409;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_104 . CDS 123468 123516 . + 0 ID=Physo158409;Parent=Physo158409;rank=3 scaffold_104 . exon 123468 123516 . + . ID=Physo158409.3;Parent=Physo158409;constitutive=1;ensembl_phase=2;rank=3 scaffold_104 . repeat_region 129884 129911 . ? . description=trf scaffold_104 ensembl protein_coding_gene 129004 129939 . + . ID=Physo141852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040036;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 129004 129939 . + . ID=Physo141852;Parent=Physo141852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 129004 129939 . + 0 ID=Physo141852;Parent=Physo141852;rank=1 scaffold_104 . exon 129004 129939 . + . ID=Physo141852.1;Parent=Physo141852;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 130299 132262 . - . ID=Physo158411;biotype=protein_coding;external_name=C_scaffold_104000007;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 130299 132262 . - . ID=Physo158411;Parent=Physo158411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 130299 130363 . - 0 ID=Physo158411;Parent=Physo158411;rank=6 scaffold_104 . exon 130299 130363 . - . ID=Physo158411.6;Parent=Physo158411;constitutive=1;ensembl_phase=1;rank=6 scaffold_104 . CDS 130430 130500 . - 0 ID=Physo158411;Parent=Physo158411;rank=5 scaffold_104 . exon 130430 130500 . - . ID=Physo158411.5;Parent=Physo158411;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_104 . CDS 130572 130694 . - 0 ID=Physo158411;Parent=Physo158411;rank=4 scaffold_104 . exon 130572 130694 . - . ID=Physo158411.4;Parent=Physo158411;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_104 . CDS 131169 131732 . - 0 ID=Physo158411;Parent=Physo158411;rank=3 scaffold_104 . exon 131169 131732 . - . ID=Physo158411.3;Parent=Physo158411;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_104 . CDS 131807 131931 . - 0 ID=Physo158411;Parent=Physo158411;rank=2 scaffold_104 . exon 131807 131931 . - . ID=Physo158411.2;Parent=Physo158411;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_104 . CDS 132029 132262 . - 0 ID=Physo158411;Parent=Physo158411;rank=1 scaffold_104 . exon 132029 132262 . - . ID=Physo158411.1;Parent=Physo158411;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 132928 134640 . - . ID=Physo158413;biotype=protein_coding;external_name=C_scaffold_104000009;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 132928 134640 . - . ID=Physo158413;Parent=Physo158413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 132928 134640 . - 0 ID=Physo158413;Parent=Physo158413;rank=1 scaffold_104 . exon 132928 134640 . - . ID=Physo158413.1;Parent=Physo158413;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 135680 137368 . - . ID=Physo158415;biotype=protein_coding;external_name=C_scaffold_104000011;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 135680 137368 . - . ID=Physo158415;Parent=Physo158415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 135680 137113 . - 0 ID=Physo158415;Parent=Physo158415;rank=2 scaffold_104 . exon 135680 137113 . - . ID=Physo158415.2;Parent=Physo158415;constitutive=1;rank=2 scaffold_104 . CDS 137168 137368 . - 0 ID=Physo158415;Parent=Physo158415;rank=1 scaffold_104 . biological_region 137167 137168 0.999 + . logic_name=eponine scaffold_104 . biological_region 137257 137260 0.999 - . logic_name=eponine scaffold_104 . biological_region 137274 137280 0.999 - . logic_name=eponine scaffold_104 . biological_region 138864 138868 0.999 - . logic_name=eponine scaffold_104 . biological_region 138866 138871 0.999 + . logic_name=eponine scaffold_104 . biological_region 138877 138881 0.999 - . logic_name=eponine scaffold_104 . biological_region 138891 138893 0.999 + . logic_name=eponine scaffold_104 ensembl protein_coding_gene 138782 139594 . + . ID=Physo141856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040040;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 138782 139594 . + . ID=Physo141856;Parent=Physo141856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 138782 139594 . + 0 ID=Physo141856;Parent=Physo141856;rank=1 scaffold_104 . exon 138782 139594 . + . ID=Physo141856.1;Parent=Physo141856;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 142944 143999 . + . ID=Physo141857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040041;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 142944 143999 . + . ID=Physo141857;Parent=Physo141857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 142944 143999 . + 0 ID=Physo141857;Parent=Physo141857;rank=1 scaffold_104 . exon 142944 143999 . + . ID=Physo141857.1;Parent=Physo141857;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 144098 145632 . - . ID=Physo141858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040042;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 144098 145632 . - . ID=Physo141858;Parent=Physo141858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 144098 144103 . - 0 ID=Physo141858;Parent=Physo141858;rank=3 scaffold_104 . exon 144098 144103 . - . ID=Physo141858.3;Parent=Physo141858;constitutive=1;rank=3 scaffold_104 . CDS 144559 145132 . - 0 ID=Physo141858;Parent=Physo141858;rank=2 scaffold_104 . exon 144559 145132 . - . ID=Physo141858.2;Parent=Physo141858;constitutive=1;ensembl_phase=2;rank=2 scaffold_104 . CDS 145205 145632 . - 0 ID=Physo141858;Parent=Physo141858;rank=1 scaffold_104 . exon 145205 145632 . - . ID=Physo141858.1;Parent=Physo141858;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 . exon 137168 137368 . - . ID=Physo158415.1;Parent=Physo158415;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 137651 138169 . - . ID=Physo158416;biotype=protein_coding;external_name=C_scaffold_104000012;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 137651 138169 . - . ID=Physo158416;Parent=Physo158416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 137651 137824 . - 0 ID=Physo158416;Parent=Physo158416;rank=3 scaffold_104 . exon 137651 137824 . - . ID=Physo158416.3;Parent=Physo158416;constitutive=1;rank=3 scaffold_104 . CDS 137913 138000 . - 0 ID=Physo158416;Parent=Physo158416;rank=2 scaffold_104 . exon 137913 138000 . - . ID=Physo158416.2;Parent=Physo158416;constitutive=1;ensembl_phase=2;rank=2 scaffold_104 . CDS 138105 138169 . - 0 ID=Physo158416;Parent=Physo158416;rank=1 scaffold_104 . exon 138105 138169 . - . ID=Physo158416.1;Parent=Physo158416;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 . repeat_region 149104 149135 . ? . description=trf scaffold_104 . repeat_region 151798 151820 . ? . description=dust scaffold_104 ensembl protein_coding_gene 147156 149357 . + . ID=Physo141859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040043;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 147156 149357 . + . ID=Physo141859;Parent=Physo141859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 147156 149357 . + 0 ID=Physo141859;Parent=Physo141859;rank=1 scaffold_104 . exon 147156 149357 . + . ID=Physo141859.1;Parent=Physo141859;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 149692 151758 . - . ID=Physo141860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040044;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 149692 151758 . - . ID=Physo141860;Parent=Physo141860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 149692 151758 . - 0 ID=Physo141860;Parent=Physo141860;rank=1 scaffold_104 . exon 149692 151758 . - . ID=Physo141860.1;Parent=Physo141860;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 153047 153797 . + . ID=Physo141861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040045;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 153047 153797 . + . ID=Physo141861;Parent=Physo141861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 153047 153676 . + 0 ID=Physo141861;Parent=Physo141861;rank=1 scaffold_104 . exon 153047 153676 . + . ID=Physo141861.1;Parent=Physo141861;constitutive=1;rank=1 scaffold_104 . CDS 153723 153797 . + 0 ID=Physo141861;Parent=Physo141861;rank=2 scaffold_104 . exon 153723 153797 . + . ID=Physo141861.2;Parent=Physo141861;constitutive=1;rank=2 scaffold_104 ensembl protein_coding_gene 153991 156173 . - . ID=Physo141862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040046;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 153991 156173 . - . ID=Physo141862;Parent=Physo141862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . exon 153991 156173 . - . ID=Physo141862.1;Parent=Physo141862;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_104 . CDS 154050 156173 . - 0 ID=Physo141862;Parent=Physo141862;rank=1 scaffold_104 . biological_region 157659 157662 0.999 - . logic_name=eponine scaffold_104 . biological_region 161544 161545 0.999 + . logic_name=eponine scaffold_104 . biological_region 161675 161679 0.999 + . logic_name=eponine scaffold_104 . biological_region 161751 161751 0.999 - . logic_name=eponine scaffold_104 . biological_region 162415 162419 0.999 + . logic_name=eponine scaffold_104 . repeat_region 163741 163882 . + . description=(CGA)n scaffold_104 . biological_region 165507 165513 0.999 - . logic_name=eponine scaffold_104 ensembl protein_coding_gene 165931 166968 . + . ID=Physo109428;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1040003;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 165931 166968 . + . ID=Physo109428;Parent=Physo109428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 165931 166086 . + 0 ID=Physo109428;Parent=Physo109428;rank=1 scaffold_104 . exon 165931 166086 . + . ID=Physo109428.1;Parent=Physo109428;constitutive=1;rank=1 scaffold_104 . CDS 166187 166894 . + 0 ID=Physo109428;Parent=Physo109428;rank=2 scaffold_104 . exon 166187 166894 . + . ID=Physo109428.2;Parent=Physo109428;constitutive=1;rank=2 scaffold_104 . CDS 166936 166968 . + 0 ID=Physo109428;Parent=Physo109428;rank=3 scaffold_104 ensembl protein_coding_gene 157163 159348 . + . ID=Physo141863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040047;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 157163 159348 . + . ID=Physo141863;Parent=Physo141863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 157163 159250 . + 0 ID=Physo141863;Parent=Physo141863;rank=1 scaffold_104 . exon 157163 159348 . + . ID=Physo141863.1;Parent=Physo141863;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_104 ensembl protein_coding_gene 161492 163912 . + . ID=Physo141864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040048;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 161492 163912 . + . ID=Physo141864;Parent=Physo141864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 161492 163912 . + 0 ID=Physo141864;Parent=Physo141864;rank=1 scaffold_104 . exon 161492 163912 . + . ID=Physo141864.1;Parent=Physo141864;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 164019 165614 . - . ID=Physo141865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040049;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 164019 165614 . - . ID=Physo141865;Parent=Physo141865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 164019 164792 . - 0 ID=Physo141865;Parent=Physo141865;rank=4 scaffold_104 . exon 164019 164792 . - . ID=Physo141865.4;Parent=Physo141865;constitutive=1;rank=4 scaffold_104 . CDS 164871 165001 . - 0 ID=Physo141865;Parent=Physo141865;rank=3 scaffold_104 . exon 164871 165001 . - . ID=Physo141865.3;Parent=Physo141865;constitutive=1;ensembl_phase=1;rank=3 scaffold_104 . CDS 165086 165200 . - 0 ID=Physo141865;Parent=Physo141865;rank=2 scaffold_104 . exon 165086 165200 . - . ID=Physo141865.2;Parent=Physo141865;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_104 . CDS 165309 165614 . - 0 ID=Physo141865;Parent=Physo141865;rank=1 scaffold_104 . exon 165309 165614 . - . ID=Physo141865.1;Parent=Physo141865;constitutive=1;rank=1 scaffold_104 . repeat_region 167519 167544 . ? . description=dust scaffold_104 . repeat_region 167519 167544 . ? . description=trf scaffold_104 . repeat_region 174575 174633 . ? . description=trf scaffold_104 . exon 166936 166968 . + . ID=Physo109428.3;Parent=Physo109428;constitutive=1;rank=3 scaffold_104 ensembl protein_coding_gene 167755 168152 . - . ID=Physo141867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040051;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 167755 168152 . - . ID=Physo141867;Parent=Physo141867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . exon 167755 168152 . - . ID=Physo141867.1;Parent=Physo141867;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_104 . CDS 167756 168151 . - 0 ID=Physo141867;Parent=Physo141867;rank=1 scaffold_104 ensembl protein_coding_gene 170930 171772 . - . ID=Physo141868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040052;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 170930 171772 . - . ID=Physo141868;Parent=Physo141868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 170930 171772 . - 0 ID=Physo141868;Parent=Physo141868;rank=1 scaffold_104 . exon 170930 171772 . - . ID=Physo141868.1;Parent=Physo141868;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 173923 175146 . - . ID=Physo141869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040053;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 173923 175146 . - . ID=Physo141869;Parent=Physo141869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 173923 175128 . - 0 ID=Physo141869;Parent=Physo141869;rank=1 scaffold_104 . exon 173923 175146 . - . ID=Physo141869.1;Parent=Physo141869;constitutive=1;ensembl_phase=-1;rank=1 scaffold_104 . biological_region 178595 178595 0.999 + . logic_name=eponine scaffold_104 . biological_region 178684 178687 0.999 - . logic_name=eponine scaffold_104 . biological_region 178737 178744 0.999 + . logic_name=eponine scaffold_104 . biological_region 180938 180943 0.999 + . logic_name=eponine scaffold_104 . biological_region 183018 183020 0.999 - . logic_name=eponine scaffold_104 ensembl protein_coding_gene 180249 181289 . - . ID=Physo141870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040054;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 180249 181289 . - . ID=Physo141870;Parent=Physo141870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 180249 181289 . - 0 ID=Physo141870;Parent=Physo141870;rank=1 scaffold_104 . exon 180249 181289 . - . ID=Physo141870.1;Parent=Physo141870;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 181936 183094 . - . ID=Physo141871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040055;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 181936 183094 . - . ID=Physo141871;Parent=Physo141871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . exon 181936 182437 . - . ID=Physo141871.2;Parent=Physo141871;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_104 . CDS 182022 182437 . - 0 ID=Physo141871;Parent=Physo141871;rank=2 scaffold_104 . CDS 182596 183043 . - 0 ID=Physo141871;Parent=Physo141871;rank=1 scaffold_104 . exon 182596 183094 . - . ID=Physo141871.1;Parent=Physo141871;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_104 ensembl protein_coding_gene 183987 185603 . + . ID=Physo141872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040056;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 183987 185603 . + . ID=Physo141872;Parent=Physo141872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . exon 183987 184317 . + . ID=Physo141872.1;Parent=Physo141872;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_104 . CDS 184044 184317 . + 0 ID=Physo141872;Parent=Physo141872;rank=1 scaffold_104 . CDS 184378 185570 . + 0 ID=Physo141872;Parent=Physo141872;rank=2 scaffold_104 . exon 184378 185603 . + . ID=Physo141872.2;Parent=Physo141872;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_104 . repeat_region 188513 188820 . + . description=GypsyPi-1c_LTR scaffold_104 . repeat_region 188821 191968 . + . description=GypsyPi-1c_I-int scaffold_104 . repeat_region 190657 190822 . ? . description=trf scaffold_104 . repeat_region 190801 190871 . ? . description=trf scaffold_104 . repeat_region 191975 194924 . + . description=GypsyPi-1c_I-int scaffold_104 . repeat_region 194976 195288 . + . description=GypsyPi-1c_I-int scaffold_104 ensembl protein_coding_gene 186414 187418 . - . ID=Physo141873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040057;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 186414 187418 . - . ID=Physo141873;Parent=Physo141873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 186414 187418 . - 0 ID=Physo141873;Parent=Physo141873;rank=1 scaffold_104 . exon 186414 187418 . - . ID=Physo141873.1;Parent=Physo141873;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 188907 193808 . + . ID=Physo141874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040058;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 188907 193808 . + . ID=Physo141874;Parent=Physo141874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 188907 189907 . + 0 ID=Physo141874;Parent=Physo141874;rank=1 scaffold_104 . exon 188907 189907 . + . ID=Physo141874.1;Parent=Physo141874;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 . CDS 190080 191684 . + 0 ID=Physo141874;Parent=Physo141874;rank=2 scaffold_104 . exon 190080 191684 . + . ID=Physo141874.2;Parent=Physo141874;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_104 . CDS 191713 192112 . + 0 ID=Physo141874;Parent=Physo141874;rank=3 scaffold_104 . exon 191713 192112 . + . ID=Physo141874.3;Parent=Physo141874;constitutive=1;ensembl_phase=2;rank=3 scaffold_104 . CDS 192134 193753 . + 0 ID=Physo141874;Parent=Physo141874;rank=4 scaffold_104 . exon 192134 193753 . + . ID=Physo141874.4;Parent=Physo141874;constitutive=1;rank=4 scaffold_104 . CDS 193800 193808 . + 0 ID=Physo141874;Parent=Physo141874;rank=5 scaffold_104 . exon 193800 193808 . + . ID=Physo141874.5;Parent=Physo141874;constitutive=1;rank=5 scaffold_104 ensembl protein_coding_gene 194082 195993 . - . ID=Physo141875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040059;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 194082 195993 . - . ID=Physo141875;Parent=Physo141875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 194082 194682 . - 0 ID=Physo141875;Parent=Physo141875;rank=3 scaffold_104 . exon 194082 194682 . - . ID=Physo141875.3;Parent=Physo141875;constitutive=1;ensembl_phase=2;rank=3 scaffold_104 . CDS 195047 195291 . - 0 ID=Physo141875;Parent=Physo141875;rank=2 scaffold_104 . exon 195047 195291 . - . ID=Physo141875.2;Parent=Physo141875;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_104 . CDS 195400 195993 . - 0 ID=Physo141875;Parent=Physo141875;rank=1 scaffold_104 . exon 195400 195993 . - . ID=Physo141875.1;Parent=Physo141875;constitutive=1;rank=1 scaffold_104 . biological_region 195924 195927 0.999 - . logic_name=eponine scaffold_104 . repeat_region 196059 196108 . ? . description=dust scaffold_104 . biological_region 196372 196376 0.999 - . logic_name=eponine scaffold_104 . biological_region 197047 197050 0.999 + . logic_name=eponine scaffold_104 . biological_region 197096 197101 0.999 + . logic_name=eponine scaffold_104 . biological_region 198584 198589 0.999 - . logic_name=eponine scaffold_104 . biological_region 198783 198784 0.999 - . logic_name=eponine scaffold_104 ensembl protein_coding_gene 202081 202341 . + . ID=Physo122352;biotype=protein_coding;external_name=estExt_Genewise1.C_1040034;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 202081 202341 . + . ID=Physo122352;Parent=Physo122352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . exon 202081 202341 . + . ID=Physo122352.1;Parent=Physo122352;constitutive=1;ensembl_phase=-1;rank=1 scaffold_104 . CDS 202120 202341 . + 0 ID=Physo122352;Parent=Physo122352;rank=1 scaffold_104 ensembl protein_coding_gene 196940 198851 . - . ID=Physo141876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040060;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 196940 198851 . - . ID=Physo141876;Parent=Physo141876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 196940 197540 . - 0 ID=Physo141876;Parent=Physo141876;rank=3 scaffold_104 . exon 196940 197540 . - . ID=Physo141876.3;Parent=Physo141876;constitutive=1;ensembl_phase=2;rank=3 scaffold_104 . CDS 197905 198149 . - 0 ID=Physo141876;Parent=Physo141876;rank=2 scaffold_104 . exon 197905 198149 . - . ID=Physo141876.2;Parent=Physo141876;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_104 . CDS 198258 198851 . - 0 ID=Physo141876;Parent=Physo141876;rank=1 scaffold_104 . exon 198258 198851 . - . ID=Physo141876.1;Parent=Physo141876;constitutive=1;rank=1 scaffold_104 ensembl protein_coding_gene 199354 200591 . + . ID=Physo141877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040061;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 199354 200591 . + . ID=Physo141877;Parent=Physo141877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 199354 200515 . + 0 ID=Physo141877;Parent=Physo141877;rank=1 scaffold_104 . exon 199354 200515 . + . ID=Physo141877.1;Parent=Physo141877;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 . CDS 200581 200591 . + 0 ID=Physo141877;Parent=Physo141877;rank=2 scaffold_104 . exon 200581 200591 . + . ID=Physo141877.2;Parent=Physo141877;constitutive=1;ensembl_phase=1;rank=2 scaffold_104 ensembl protein_coding_gene 203656 204399 . - . ID=Physo141878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040062;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 203656 204399 . - . ID=Physo141878;Parent=Physo141878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 203656 204399 . - 0 ID=Physo141878;Parent=Physo141878;rank=1 scaffold_104 . exon 203656 204399 . - . ID=Physo141878.1;Parent=Physo141878;constitutive=1;rank=1 scaffold_104 . repeat_region 211567 211596 . ? . description=trf scaffold_104 . repeat_region 218998 219058 . ? . description=dust scaffold_104 . biological_region 219783 219786 0.999 - . logic_name=eponine scaffold_104 . biological_region 219840 219846 0.999 - . logic_name=eponine scaffold_104 . repeat_region 222404 222413 . ? . description=dust scaffold_104 . repeat_region 222727 222734 . ? . description=dust scaffold_104 ensembl protein_coding_gene 216795 218141 . + . ID=Physo141879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040063;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 216795 218141 . + . ID=Physo141879;Parent=Physo141879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 216795 217391 . + 0 ID=Physo141879;Parent=Physo141879;rank=1 scaffold_104 . exon 216795 217391 . + . ID=Physo141879.1;Parent=Physo141879;constitutive=1;rank=1 scaffold_104 . CDS 217473 217796 . + 0 ID=Physo141879;Parent=Physo141879;rank=2 scaffold_104 . exon 217473 217796 . + . ID=Physo141879.2;Parent=Physo141879;constitutive=1;rank=2 scaffold_104 . CDS 217868 217948 . + 0 ID=Physo141879;Parent=Physo141879;rank=3 scaffold_104 . exon 217868 217948 . + . ID=Physo141879.3;Parent=Physo141879;constitutive=1;rank=3 scaffold_104 . CDS 218010 218141 . + 0 ID=Physo141879;Parent=Physo141879;rank=4 scaffold_104 . exon 218010 218141 . + . ID=Physo141879.4;Parent=Physo141879;constitutive=1;rank=4 scaffold_104 ensembl protein_coding_gene 218250 219217 . - . ID=Physo141880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040064;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 218250 219217 . - . ID=Physo141880;Parent=Physo141880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 218250 218690 . - 0 ID=Physo141880;Parent=Physo141880;rank=3 scaffold_104 . exon 218250 218690 . - . ID=Physo141880.3;Parent=Physo141880;constitutive=1;rank=3 scaffold_104 . CDS 218768 218861 . - 0 ID=Physo141880;Parent=Physo141880;rank=2 scaffold_104 . exon 218768 218861 . - . ID=Physo141880.2;Parent=Physo141880;constitutive=1;ensembl_phase=2;rank=2 scaffold_104 . CDS 218928 219217 . - 0 ID=Physo141880;Parent=Physo141880;rank=1 scaffold_104 . exon 218928 219217 . - . ID=Physo141880.1;Parent=Physo141880;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 . repeat_region 226105 226196 . ? . description=trf scaffold_104 ensembl protein_coding_gene 233548 236331 . - . ID=Physo122358;biotype=protein_coding;external_name=estExt_Genewise1.C_1040040;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 233548 236331 . - . ID=Physo122358;Parent=Physo122358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 233548 236119 . - 0 ID=Physo122358;Parent=Physo122358;rank=2 scaffold_104 . exon 233548 236119 . - . ID=Physo122358.2;Parent=Physo122358;constitutive=1;ensembl_phase=2;rank=2 scaffold_104 . CDS 236201 236331 . - 0 ID=Physo122358;Parent=Physo122358;rank=1 scaffold_104 ensembl protein_coding_gene 231977 233187 . + . ID=Physo141881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040065;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 231977 233187 . + . ID=Physo141881;Parent=Physo141881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 231977 232088 . + 0 ID=Physo141881;Parent=Physo141881;rank=1 scaffold_104 . exon 231977 232088 . + . ID=Physo141881.1;Parent=Physo141881;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 . CDS 232169 233187 . + 0 ID=Physo141881;Parent=Physo141881;rank=2 scaffold_104 . exon 232169 233187 . + . ID=Physo141881.2;Parent=Physo141881;constitutive=1;ensembl_phase=1;rank=2 scaffold_104 . repeat_region 235466 235523 . ? . description=dust scaffold_104 . biological_region 235742 235743 0.999 + . logic_name=eponine scaffold_104 . biological_region 235912 235916 0.999 - . logic_name=eponine scaffold_104 . biological_region 235993 235995 0.999 + . logic_name=eponine scaffold_104 . repeat_region 237725 237746 . ? . description=dust scaffold_104 . biological_region 242001 242007 0.999 - . logic_name=eponine scaffold_104 . biological_region 242412 242415 0.999 + . logic_name=eponine scaffold_104 . biological_region 242432 242434 0.999 - . logic_name=eponine scaffold_104 . exon 236201 236331 . - . ID=Physo122358.1;Parent=Physo122358;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 ensembl protein_coding_gene 240019 242067 . - . ID=Physo141884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040068;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 240019 242067 . - . ID=Physo141884;Parent=Physo141884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 240019 240081 . - 0 ID=Physo141884;Parent=Physo141884;rank=7 scaffold_104 . exon 240019 240081 . - . ID=Physo141884.7;Parent=Physo141884;constitutive=1;rank=7 scaffold_104 . CDS 240163 240225 . - 0 ID=Physo141884;Parent=Physo141884;rank=6 scaffold_104 . exon 240163 240225 . - . ID=Physo141884.6;Parent=Physo141884;constitutive=1;rank=6 scaffold_104 . CDS 240320 240718 . - 0 ID=Physo141884;Parent=Physo141884;rank=5 scaffold_104 . exon 240320 240718 . - . ID=Physo141884.5;Parent=Physo141884;constitutive=1;rank=5 scaffold_104 . CDS 240793 241481 . - 0 ID=Physo141884;Parent=Physo141884;rank=4 scaffold_104 . exon 240793 241481 . - . ID=Physo141884.4;Parent=Physo141884;constitutive=1;ensembl_phase=1;rank=4 scaffold_104 . CDS 241551 241611 . - 0 ID=Physo141884;Parent=Physo141884;rank=3 scaffold_104 . exon 241551 241611 . - . ID=Physo141884.3;Parent=Physo141884;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_104 . CDS 241700 241788 . - 0 ID=Physo141884;Parent=Physo141884;rank=2 scaffold_104 . exon 241700 241788 . - . ID=Physo141884.2;Parent=Physo141884;constitutive=1;ensembl_phase=1;rank=2 scaffold_104 . CDS 241866 242067 . - 0 ID=Physo141884;Parent=Physo141884;rank=1 scaffold_104 . exon 241866 242067 . - . ID=Physo141884.1;Parent=Physo141884;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 ensembl protein_coding_gene 242291 243547 . + . ID=Physo141885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040069;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 242291 243547 . + . ID=Physo141885;Parent=Physo141885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 242291 242791 . + 0 ID=Physo141885;Parent=Physo141885;rank=1 scaffold_104 . exon 242291 242791 . + . ID=Physo141885.1;Parent=Physo141885;constitutive=1;rank=1 scaffold_104 . CDS 242870 243547 . + 0 ID=Physo141885;Parent=Physo141885;rank=2 scaffold_104 . exon 242870 243547 . + . ID=Physo141885.2;Parent=Physo141885;constitutive=1;rank=2 scaffold_104 ensembl protein_coding_gene 236518 239935 . + . ID=Physo158423;biotype=protein_coding;external_name=C_scaffold_104000019;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 236518 239935 . + . ID=Physo158423;Parent=Physo158423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 236518 236601 . + 0 ID=Physo158423;Parent=Physo158423;rank=1 scaffold_104 . exon 236518 236601 . + . ID=Physo158423.1;Parent=Physo158423;constitutive=1;rank=1 scaffold_104 . CDS 236635 236786 . + 0 ID=Physo158423;Parent=Physo158423;rank=2 scaffold_104 . exon 236635 236786 . + . ID=Physo158423.2;Parent=Physo158423;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_104 . CDS 236867 236960 . + 0 ID=Physo158423;Parent=Physo158423;rank=3 scaffold_104 . exon 236867 236960 . + . ID=Physo158423.3;Parent=Physo158423;constitutive=1;ensembl_phase=2;rank=3 scaffold_104 . CDS 237036 237141 . + 0 ID=Physo158423;Parent=Physo158423;rank=4 scaffold_104 . exon 237036 237141 . + . ID=Physo158423.4;Parent=Physo158423;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_104 . CDS 237228 237487 . + 0 ID=Physo158423;Parent=Physo158423;rank=5 scaffold_104 . exon 237228 237487 . + . ID=Physo158423.5;Parent=Physo158423;constitutive=1;ensembl_phase=1;rank=5 scaffold_104 . CDS 237570 237653 . + 0 ID=Physo158423;Parent=Physo158423;rank=6 scaffold_104 . exon 237570 237653 . + . ID=Physo158423.6;Parent=Physo158423;constitutive=1;rank=6 scaffold_104 . CDS 237762 237801 . + 0 ID=Physo158423;Parent=Physo158423;rank=7 scaffold_104 . exon 237762 237801 . + . ID=Physo158423.7;Parent=Physo158423;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_104 . CDS 237952 238137 . + 0 ID=Physo158423;Parent=Physo158423;rank=8 scaffold_104 . exon 237952 238137 . + . ID=Physo158423.8;Parent=Physo158423;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_104 . CDS 238227 238451 . + 0 ID=Physo158423;Parent=Physo158423;rank=9 scaffold_104 . exon 238227 238451 . + . ID=Physo158423.9;Parent=Physo158423;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_104 . CDS 238545 239025 . + 0 ID=Physo158423;Parent=Physo158423;rank=10 scaffold_104 . exon 238545 239025 . + . ID=Physo158423.10;Parent=Physo158423;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_104 . CDS 239548 239683 . + 0 ID=Physo158423;Parent=Physo158423;rank=11 scaffold_104 . exon 239548 239683 . + . ID=Physo158423.11;Parent=Physo158423;constitutive=1;ensembl_phase=2;rank=11 scaffold_104 . CDS 239786 239935 . + 0 ID=Physo158423;Parent=Physo158423;rank=12 scaffold_104 . exon 239786 239935 . + . ID=Physo158423.12;Parent=Physo158423;constitutive=1;rank=12 scaffold_104 ensembl protein_coding_gene 243665 246781 . - . ID=Physo158426;biotype=protein_coding;external_name=C_scaffold_104000022;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 243665 246781 . - . ID=Physo158426;Parent=Physo158426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 243665 244375 . - 0 ID=Physo158426;Parent=Physo158426;rank=7 scaffold_104 . exon 243665 244375 . - . ID=Physo158426.7;Parent=Physo158426;constitutive=1;rank=7 scaffold_104 . CDS 244457 244574 . - 0 ID=Physo158426;Parent=Physo158426;rank=6 scaffold_104 . exon 244457 244574 . - . ID=Physo158426.6;Parent=Physo158426;constitutive=1;ensembl_phase=2;rank=6 scaffold_104 . CDS 244652 244725 . - 0 ID=Physo158426;Parent=Physo158426;rank=5 scaffold_104 . exon 244652 244725 . - . ID=Physo158426.5;Parent=Physo158426;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_104 . CDS 244973 244976 . - 0 ID=Physo158426;Parent=Physo158426;rank=4 scaffold_104 . CDS 245237 246018 . - 0 ID=Physo158426;Parent=Physo158426;rank=3 scaffold_104 . CDS 246073 246579 . - 0 ID=Physo158426;Parent=Physo158426;rank=2 scaffold_104 . CDS 246644 246781 . - 0 ID=Physo158426;Parent=Physo158426;rank=1 scaffold_104 . repeat_region 246408 246444 . ? . description=trf scaffold_104 ensembl protein_coding_gene 246951 248344 . + . ID=Physo122360;biotype=protein_coding;external_name=estExt_Genewise1.C_1040042;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 246951 248344 . + . ID=Physo122360;Parent=Physo122360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . exon 246951 247062 . + . ID=Physo122360.1;Parent=Physo122360;constitutive=1;ensembl_phase=-1;rank=1 scaffold_104 . CDS 246955 247062 . + 0 ID=Physo122360;Parent=Physo122360;rank=1 scaffold_104 . CDS 247147 247303 . + 0 ID=Physo122360;Parent=Physo122360;rank=2 scaffold_104 . exon 247147 247303 . + . ID=Physo122360.2;Parent=Physo122360;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_104 . CDS 247376 247419 . + 0 ID=Physo122360;Parent=Physo122360;rank=3 scaffold_104 . exon 247376 247575 . + . ID=Physo122360.3;Parent=Physo122360;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_104 . exon 248256 248344 . + . ID=Physo122360.4;Parent=Physo122360;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_104 ensembl protein_coding_gene 249601 254046 . - . ID=Physo141887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040071;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 249601 254046 . - . ID=Physo141887;Parent=Physo141887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . exon 249601 253714 . - . ID=Physo141887.2;Parent=Physo141887;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_104 . CDS 249797 253714 . - 0 ID=Physo141887;Parent=Physo141887;rank=2 scaffold_104 . CDS 253816 254046 . - 0 ID=Physo141887;Parent=Physo141887;rank=1 scaffold_104 . exon 253816 254046 . - . ID=Physo141887.1;Parent=Physo141887;constitutive=1;rank=1 scaffold_104 . exon 244973 244976 . - . ID=Physo158426.4;Parent=Physo158426;constitutive=1;ensembl_phase=2;rank=4 scaffold_104 . exon 245237 246018 . - . ID=Physo158426.3;Parent=Physo158426;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_104 . exon 246073 246579 . - . ID=Physo158426.2;Parent=Physo158426;constitutive=1;rank=2 scaffold_104 . exon 246644 246781 . - . ID=Physo158426.1;Parent=Physo158426;constitutive=1;rank=1 scaffold_104 . biological_region 254711 254714 0.999 + . logic_name=eponine scaffold_104 . biological_region 255553 255554 0.999 + . logic_name=eponine scaffold_104 . biological_region 255577 255581 0.999 - . logic_name=eponine scaffold_104 . biological_region 255852 255856 0.999 + . logic_name=eponine scaffold_104 . biological_region 256167 256169 0.999 + . logic_name=eponine scaffold_104 . repeat_region 263574 263582 . ? . description=dust scaffold_104 ensembl protein_coding_gene 255194 255455 . - . ID=Physo158427;biotype=protein_coding;external_name=C_scaffold_104000023;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 255194 255455 . - . ID=Physo158427;Parent=Physo158427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 255194 255350 . - 0 ID=Physo158427;Parent=Physo158427;rank=2 scaffold_104 . exon 255194 255350 . - . ID=Physo158427.2;Parent=Physo158427;constitutive=1;ensembl_phase=2;rank=2 scaffold_104 . CDS 255430 255455 . - 0 ID=Physo158427;Parent=Physo158427;rank=1 scaffold_104 . exon 255430 255455 . - . ID=Physo158427.1;Parent=Physo158427;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_104 ensembl protein_coding_gene 255829 259197 . + . ID=Physo158428;biotype=protein_coding;external_name=C_scaffold_104000024;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 255829 259197 . + . ID=Physo158428;Parent=Physo158428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 255829 256021 . + 0 ID=Physo158428;Parent=Physo158428;rank=1 scaffold_104 . exon 255829 256021 . + . ID=Physo158428.1;Parent=Physo158428;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_104 . CDS 256105 256410 . + 0 ID=Physo158428;Parent=Physo158428;rank=2 scaffold_104 . exon 256105 256410 . + . ID=Physo158428.2;Parent=Physo158428;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_104 . CDS 257018 257295 . + 0 ID=Physo158428;Parent=Physo158428;rank=3 scaffold_104 . exon 257018 257295 . + . ID=Physo158428.3;Parent=Physo158428;constitutive=1;ensembl_phase=1;rank=3 scaffold_104 . CDS 257356 258982 . + 0 ID=Physo158428;Parent=Physo158428;rank=4 scaffold_104 . exon 257356 258982 . + . ID=Physo158428.4;Parent=Physo158428;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_104 . CDS 259058 259197 . + 0 ID=Physo158428;Parent=Physo158428;rank=5 scaffold_104 . exon 259058 259197 . + . ID=Physo158428.5;Parent=Physo158428;constitutive=1;ensembl_phase=1;rank=5 scaffold_104 ensembl protein_coding_gene 259898 260140 . - . ID=Physo158429;biotype=protein_coding;external_name=C_scaffold_104000025;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 259898 260140 . - . ID=Physo158429;Parent=Physo158429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 259898 260140 . - 0 ID=Physo158429;Parent=Physo158429;rank=1 scaffold_104 . exon 259898 260140 . - . ID=Physo158429.1;Parent=Physo158429;constitutive=1;rank=1 scaffold_104 . repeat_region 267969 268018 . ? . description=trf scaffold_104 ensembl protein_coding_gene 268778 270011 . + . ID=Physo141890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040074;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 268778 270011 . + . ID=Physo141890;Parent=Physo141890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 268778 269047 . + 0 ID=Physo141890;Parent=Physo141890;rank=1 scaffold_104 . exon 268778 269047 . + . ID=Physo141890.1;Parent=Physo141890;constitutive=1;rank=1 scaffold_104 . CDS 269103 270011 . + 0 ID=Physo141890;Parent=Physo141890;rank=2 scaffold_104 . exon 269103 270011 . + . ID=Physo141890.2;Parent=Physo141890;constitutive=1;rank=2 scaffold_104 ensembl protein_coding_gene 270731 274231 . - . ID=Physo141891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1040075;logic_name=jgi_physo1_1 scaffold_104 ensembl transcript 270731 274231 . - . ID=Physo141891;Parent=Physo141891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_104 . CDS 270731 274141 . - 0 ID=Physo141891;Parent=Physo141891;rank=1 scaffold_104 . exon 270731 274231 . - . ID=Physo141891.1;Parent=Physo141891;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_106 1 274408 scaffold_106 . repeat_region 1383 2719 . ? . description=dust scaffold_106 . repeat_region 3953 4862 . ? . description=dust scaffold_106 . repeat_region 5611 5880 . ? . description=dust scaffold_106 ensembl protein_coding_gene 6881 9457 . - . ID=Physo109433;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1060001;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 6881 9457 . - . ID=Physo109433;Parent=Physo109433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 6881 7227 . - . ID=Physo109433.2;Parent=Physo109433;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_106 . CDS 7113 7227 . - 0 ID=Physo109433;Parent=Physo109433;rank=2 scaffold_106 . CDS 8292 9457 . - 0 ID=Physo109433;Parent=Physo109433;rank=1 scaffold_106 . exon 8292 9457 . - . ID=Physo109433.1;Parent=Physo109433;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 ensembl protein_coding_gene 197 1376 . - . ID=Physo141942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060001;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 197 1376 . - . ID=Physo141942;Parent=Physo141942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 197 1376 . - . ID=Physo141942.1;Parent=Physo141942;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_106 . CDS 430 1359 . - 0 ID=Physo141942;Parent=Physo141942;rank=1 scaffold_106 ensembl protein_coding_gene 9585 13101 . - . ID=Physo141944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060003;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 9585 13101 . - . ID=Physo141944;Parent=Physo141944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 9585 11698 . - . ID=Physo141944.2;Parent=Physo141944;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_106 . CDS 9587 11698 . - 0 ID=Physo141944;Parent=Physo141944;rank=2 scaffold_106 . CDS 11782 13101 . - 0 ID=Physo141944;Parent=Physo141944;rank=1 scaffold_106 . biological_region 14885 14886 0.999 - . logic_name=eponine scaffold_106 . biological_region 15871 15872 0.999 - . logic_name=eponine scaffold_106 . biological_region 15925 15928 0.999 + . logic_name=eponine scaffold_106 . biological_region 16008 16012 0.999 - . logic_name=eponine scaffold_106 . biological_region 17160 17162 0.999 - . logic_name=eponine scaffold_106 . biological_region 19049 19051 0.999 - . logic_name=eponine scaffold_106 . exon 11782 13101 . - . ID=Physo141944.1;Parent=Physo141944;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 14665 16212 . + . ID=Physo141945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060004;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 14665 16212 . + . ID=Physo141945;Parent=Physo141945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 14665 16212 . + 0 ID=Physo141945;Parent=Physo141945;rank=1 scaffold_106 . exon 14665 16212 . + . ID=Physo141945.1;Parent=Physo141945;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 16396 17789 . + . ID=Physo141946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060005;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 16396 17789 . + . ID=Physo141946;Parent=Physo141946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 16396 16492 . + 0 ID=Physo141946;Parent=Physo141946;rank=1 scaffold_106 . exon 16396 16492 . + . ID=Physo141946.1;Parent=Physo141946;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 . CDS 16565 16586 . + 0 ID=Physo141946;Parent=Physo141946;rank=2 scaffold_106 . exon 16565 16586 . + . ID=Physo141946.2;Parent=Physo141946;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_106 . CDS 16665 16701 . + 0 ID=Physo141946;Parent=Physo141946;rank=3 scaffold_106 . exon 16665 16701 . + . ID=Physo141946.3;Parent=Physo141946;constitutive=1;ensembl_phase=2;rank=3 scaffold_106 . CDS 16772 16795 . + 0 ID=Physo141946;Parent=Physo141946;rank=4 scaffold_106 . exon 16772 16795 . + . ID=Physo141946.4;Parent=Physo141946;constitutive=1;rank=4 scaffold_106 . CDS 16855 16932 . + 0 ID=Physo141946;Parent=Physo141946;rank=5 scaffold_106 . exon 16855 16932 . + . ID=Physo141946.5;Parent=Physo141946;constitutive=1;rank=5 scaffold_106 . CDS 17008 17350 . + 0 ID=Physo141946;Parent=Physo141946;rank=6 scaffold_106 . exon 17008 17350 . + . ID=Physo141946.6;Parent=Physo141946;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_106 . CDS 17416 17592 . + 0 ID=Physo141946;Parent=Physo141946;rank=7 scaffold_106 . exon 17416 17592 . + . ID=Physo141946.7;Parent=Physo141946;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_106 . CDS 17656 17699 . + 0 ID=Physo141946;Parent=Physo141946;rank=8 scaffold_106 . exon 17656 17789 . + . ID=Physo141946.8;Parent=Physo141946;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=8 scaffold_106 ensembl protein_coding_gene 17847 22339 . - . ID=Physo141947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060006;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 17847 22339 . - . ID=Physo141947;Parent=Physo141947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 17847 21491 . - 0 ID=Physo141947;Parent=Physo141947;rank=3 scaffold_106 . exon 17847 21491 . - . ID=Physo141947.3;Parent=Physo141947;constitutive=1;rank=3 scaffold_106 . CDS 21574 21976 . - 0 ID=Physo141947;Parent=Physo141947;rank=2 scaffold_106 . CDS 22095 22339 . - 0 ID=Physo141947;Parent=Physo141947;rank=1 scaffold_106 . repeat_region 22010 22029 . ? . description=trf scaffold_106 . exon 21574 21976 . - . ID=Physo141947.2;Parent=Physo141947;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . exon 22095 22339 . - . ID=Physo141947.1;Parent=Physo141947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 ensembl protein_coding_gene 27832 29657 . + . ID=Physo141949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060008;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 27832 29657 . + . ID=Physo141949;Parent=Physo141949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 27832 28015 . + 0 ID=Physo141949;Parent=Physo141949;rank=1 scaffold_106 . exon 27832 28015 . + . ID=Physo141949.1;Parent=Physo141949;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 . CDS 28091 28160 . + 0 ID=Physo141949;Parent=Physo141949;rank=2 scaffold_106 . exon 28091 28160 . + . ID=Physo141949.2;Parent=Physo141949;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_106 . CDS 28242 28503 . + 0 ID=Physo141949;Parent=Physo141949;rank=3 scaffold_106 . exon 28242 28503 . + . ID=Physo141949.3;Parent=Physo141949;constitutive=1;ensembl_phase=2;rank=3 scaffold_106 . CDS 28585 28698 . + 0 ID=Physo141949;Parent=Physo141949;rank=4 scaffold_106 . exon 28585 28698 . + . ID=Physo141949.4;Parent=Physo141949;constitutive=1;rank=4 scaffold_106 . CDS 28766 28822 . + 0 ID=Physo141949;Parent=Physo141949;rank=5 scaffold_106 . exon 28766 28822 . + . ID=Physo141949.5;Parent=Physo141949;constitutive=1;rank=5 scaffold_106 . CDS 28887 29117 . + 0 ID=Physo141949;Parent=Physo141949;rank=6 scaffold_106 . exon 28887 29117 . + . ID=Physo141949.6;Parent=Physo141949;constitutive=1;rank=6 scaffold_106 . CDS 29188 29364 . + 0 ID=Physo141949;Parent=Physo141949;rank=7 scaffold_106 . exon 29188 29364 . + . ID=Physo141949.7;Parent=Physo141949;constitutive=1;rank=7 scaffold_106 . CDS 29435 29638 . + 0 ID=Physo141949;Parent=Physo141949;rank=8 scaffold_106 ensembl protein_coding_gene 23698 26622 . - . ID=Physo158430;biotype=protein_coding;external_name=C_scaffold_106000001;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 23698 26622 . - . ID=Physo158430;Parent=Physo158430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 23698 23949 . - 0 ID=Physo158430;Parent=Physo158430;rank=10 scaffold_106 . exon 23698 23949 . - . ID=Physo158430.10;Parent=Physo158430;constitutive=1;rank=10 scaffold_106 . CDS 24026 24060 . - 0 ID=Physo158430;Parent=Physo158430;rank=9 scaffold_106 . exon 24026 24060 . - . ID=Physo158430.9;Parent=Physo158430;constitutive=1;ensembl_phase=1;rank=9 scaffold_106 . CDS 24139 24499 . - 0 ID=Physo158430;Parent=Physo158430;rank=8 scaffold_106 . exon 24139 24499 . - . ID=Physo158430.8;Parent=Physo158430;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_106 . CDS 24571 24648 . - 0 ID=Physo158430;Parent=Physo158430;rank=7 scaffold_106 . exon 24571 24648 . - . ID=Physo158430.7;Parent=Physo158430;constitutive=1;rank=7 scaffold_106 . CDS 24718 24741 . - 0 ID=Physo158430;Parent=Physo158430;rank=6 scaffold_106 . exon 24718 24741 . - . ID=Physo158430.6;Parent=Physo158430;constitutive=1;rank=6 scaffold_106 . CDS 24804 24840 . - 0 ID=Physo158430;Parent=Physo158430;rank=5 scaffold_106 . exon 24804 24840 . - . ID=Physo158430.5;Parent=Physo158430;constitutive=1;ensembl_phase=2;rank=5 scaffold_106 . CDS 24914 24935 . - 0 ID=Physo158430;Parent=Physo158430;rank=4 scaffold_106 . exon 24914 24935 . - . ID=Physo158430.4;Parent=Physo158430;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_106 . CDS 25015 25079 . - 0 ID=Physo158430;Parent=Physo158430;rank=3 scaffold_106 . exon 25015 25079 . - . ID=Physo158430.3;Parent=Physo158430;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_106 . CDS 25472 25693 . - 0 ID=Physo158430;Parent=Physo158430;rank=2 scaffold_106 . exon 25472 25693 . - . ID=Physo158430.2;Parent=Physo158430;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_106 . CDS 25715 26622 . - 0 ID=Physo158430;Parent=Physo158430;rank=1 scaffold_106 . exon 25715 26622 . - . ID=Physo158430.1;Parent=Physo158430;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 . biological_region 30881 30885 0.999 + . logic_name=eponine scaffold_106 . biological_region 30902 30903 0.999 - . logic_name=eponine scaffold_106 . biological_region 30916 30919 0.999 + . logic_name=eponine scaffold_106 . biological_region 30920 30920 0.999 - . logic_name=eponine scaffold_106 . repeat_region 33394 33514 . ? . description=dust scaffold_106 . repeat_region 33834 33841 . ? . description=dust scaffold_106 . biological_region 33862 33870 0.999 + . logic_name=eponine scaffold_106 . biological_region 33937 33941 0.999 - . logic_name=eponine scaffold_106 . biological_region 33971 33973 0.999 - . logic_name=eponine scaffold_106 . biological_region 37000 37000 0.999 - . logic_name=eponine scaffold_106 ensembl protein_coding_gene 32618 33073 . - . ID=Physo109434;biotype=protein_coding;description=PsAvh461Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84LB0];external_name=estExt_fgenesh1_pm.C_1060002;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 32618 33073 . - . ID=Physo109434;Parent=Physo109434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 32618 33073 . - . ID=Physo109434.1;Parent=Physo109434;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_106 . CDS 32643 33044 . - 0 ID=Physo109434;Parent=Physo109434;rank=1 scaffold_106 . exon 29435 29657 . + . ID=Physo141949.8;Parent=Physo141949;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_106 ensembl protein_coding_gene 29748 31032 . - . ID=Physo141950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060009;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 29748 31032 . - . ID=Physo141950;Parent=Physo141950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 29748 30121 . - . ID=Physo141950.2;Parent=Physo141950;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_106 . CDS 29843 30121 . - 0 ID=Physo141950;Parent=Physo141950;rank=2 scaffold_106 . CDS 30193 31032 . - 0 ID=Physo141950;Parent=Physo141950;rank=1 scaffold_106 . exon 30193 31032 . - . ID=Physo141950.1;Parent=Physo141950;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 37326 39882 . + . ID=Physo158431;biotype=protein_coding;external_name=C_scaffold_106000002;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 37326 39882 . + . ID=Physo158431;Parent=Physo158431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 37326 37466 . + 0 ID=Physo158431;Parent=Physo158431;rank=1 scaffold_106 . exon 37326 37466 . + . ID=Physo158431.1;Parent=Physo158431;constitutive=1;rank=1 scaffold_106 . CDS 37625 37678 . + 0 ID=Physo158431;Parent=Physo158431;rank=2 scaffold_106 . exon 37625 37678 . + . ID=Physo158431.2;Parent=Physo158431;constitutive=1;rank=2 scaffold_106 . CDS 37744 37822 . + 0 ID=Physo158431;Parent=Physo158431;rank=3 scaffold_106 . exon 37744 37822 . + . ID=Physo158431.3;Parent=Physo158431;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_106 . CDS 37888 37925 . + 0 ID=Physo158431;Parent=Physo158431;rank=4 scaffold_106 . exon 37888 37925 . + . ID=Physo158431.4;Parent=Physo158431;constitutive=1;ensembl_phase=1;rank=4 scaffold_106 . CDS 38184 38420 . + 0 ID=Physo158431;Parent=Physo158431;rank=5 scaffold_106 . exon 38184 38420 . + . ID=Physo158431.5;Parent=Physo158431;constitutive=1;rank=5 scaffold_106 . CDS 38499 38609 . + 0 ID=Physo158431;Parent=Physo158431;rank=6 scaffold_106 . exon 38499 38609 . + . ID=Physo158431.6;Parent=Physo158431;constitutive=1;rank=6 scaffold_106 . CDS 39078 39305 . + 0 ID=Physo158431;Parent=Physo158431;rank=7 scaffold_106 . exon 39078 39305 . + . ID=Physo158431.7;Parent=Physo158431;constitutive=1;rank=7 scaffold_106 . CDS 39390 39672 . + 0 ID=Physo158431;Parent=Physo158431;rank=8 scaffold_106 . CDS 39700 39812 . + 0 ID=Physo158431;Parent=Physo158431;rank=9 scaffold_106 . CDS 39856 39882 . + 0 ID=Physo158431;Parent=Physo158431;rank=10 scaffold_106 . repeat_region 44810 44829 . ? . description=trf scaffold_106 . repeat_region 46065 46091 . ? . description=trf scaffold_106 ensembl protein_coding_gene 40583 41719 . - . ID=Physo141953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060012;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 40583 41719 . - . ID=Physo141953;Parent=Physo141953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 40583 41719 . - 0 ID=Physo141953;Parent=Physo141953;rank=1 scaffold_106 . exon 40583 41719 . - . ID=Physo141953.1;Parent=Physo141953;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 43750 45978 . - . ID=Physo141955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060014;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 43750 45978 . - . ID=Physo141955;Parent=Physo141955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 43750 45978 . - 0 ID=Physo141955;Parent=Physo141955;rank=1 scaffold_106 . exon 43750 45978 . - . ID=Physo141955.1;Parent=Physo141955;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 47296 48003 . + . ID=Physo141956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060015;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 47296 48003 . + . ID=Physo141956;Parent=Physo141956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 47296 48003 . + 0 ID=Physo141956;Parent=Physo141956;rank=1 scaffold_106 . exon 47296 48003 . + . ID=Physo141956.1;Parent=Physo141956;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 48999 49543 . - . ID=Physo141957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060016;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 48999 49543 . - . ID=Physo141957;Parent=Physo141957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 48999 49543 . - . ID=Physo141957.1;Parent=Physo141957;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_106 . CDS 49064 49534 . - 0 ID=Physo141957;Parent=Physo141957;rank=1 scaffold_106 . exon 39390 39672 . + . ID=Physo158431.8;Parent=Physo158431;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_106 . exon 39700 39812 . + . ID=Physo158431.9;Parent=Physo158431;constitutive=1;ensembl_phase=1;rank=9 scaffold_106 . exon 39856 39882 . + . ID=Physo158431.10;Parent=Physo158431;constitutive=1;rank=10 scaffold_106 ensembl protein_coding_gene 41925 42980 . - . ID=Physo158437;biotype=protein_coding;external_name=C_scaffold_106000008;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 41925 42980 . - . ID=Physo158437;Parent=Physo158437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 41925 42166 . - 0 ID=Physo158437;Parent=Physo158437;rank=5 scaffold_106 . exon 41925 42166 . - . ID=Physo158437.5;Parent=Physo158437;constitutive=1;ensembl_phase=1;rank=5 scaffold_106 . CDS 42245 42373 . - 0 ID=Physo158437;Parent=Physo158437;rank=4 scaffold_106 . exon 42245 42373 . - . ID=Physo158437.4;Parent=Physo158437;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_106 . CDS 42441 42690 . - 0 ID=Physo158437;Parent=Physo158437;rank=3 scaffold_106 . exon 42441 42690 . - . ID=Physo158437.3;Parent=Physo158437;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_106 . CDS 42768 42887 . - 0 ID=Physo158437;Parent=Physo158437;rank=2 scaffold_106 . exon 42768 42887 . - . ID=Physo158437.2;Parent=Physo158437;constitutive=1;rank=2 scaffold_106 . CDS 42975 42980 . - 0 ID=Physo158437;Parent=Physo158437;rank=1 scaffold_106 . exon 42975 42980 . - . ID=Physo158437.1;Parent=Physo158437;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 43187 43432 . + . ID=Physo158438;biotype=protein_coding;external_name=C_scaffold_106000009;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 43187 43432 . + . ID=Physo158438;Parent=Physo158438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 43187 43432 . + 0 ID=Physo158438;Parent=Physo158438;rank=1 scaffold_106 . exon 43187 43432 . + . ID=Physo158438.1;Parent=Physo158438;constitutive=1;rank=1 scaffold_106 . biological_region 49401 49409 0.999 + . logic_name=eponine scaffold_106 . biological_region 49597 49600 0.999 - . logic_name=eponine scaffold_106 . biological_region 49889 49892 0.999 + . logic_name=eponine scaffold_106 . biological_region 50134 50141 0.999 + . logic_name=eponine scaffold_106 . biological_region 50157 50158 0.999 + . logic_name=eponine scaffold_106 . biological_region 50223 50230 0.999 + . logic_name=eponine scaffold_106 . biological_region 50235 50235 0.999 - . logic_name=eponine scaffold_106 . biological_region 50253 50256 0.999 - . logic_name=eponine scaffold_106 . biological_region 50267 50277 0.999 - . logic_name=eponine scaffold_106 . biological_region 50302 50307 0.999 - . logic_name=eponine scaffold_106 . biological_region 50323 50329 0.999 + . logic_name=eponine scaffold_106 . biological_region 50356 50363 0.999 + . logic_name=eponine scaffold_106 . repeat_region 54514 54521 . ? . description=dust scaffold_106 . biological_region 56448 56451 0.999 + . logic_name=eponine scaffold_106 . biological_region 56510 56514 0.999 - . logic_name=eponine scaffold_106 . biological_region 56565 56569 0.999 + . logic_name=eponine scaffold_106 . biological_region 56573 56577 0.999 - . logic_name=eponine scaffold_106 . biological_region 58204 58206 0.999 + . logic_name=eponine scaffold_106 . repeat_region 58225 58263 . + . description=(ACTCG)n scaffold_106 . repeat_region 58226 58268 . ? . description=dust scaffold_106 . repeat_region 58294 58302 . ? . description=dust scaffold_106 . biological_region 58522 58523 0.999 + . logic_name=eponine scaffold_106 . repeat_region 58774 58782 . ? . description=dust scaffold_106 ensembl protein_coding_gene 50419 53649 . + . ID=Physo141958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060017;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 50419 53649 . + . ID=Physo141958;Parent=Physo141958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 50419 50462 . + 0 ID=Physo141958;Parent=Physo141958;rank=1 scaffold_106 . exon 50419 50462 . + . ID=Physo141958.1;Parent=Physo141958;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 . CDS 50483 50644 . + 0 ID=Physo141958;Parent=Physo141958;rank=2 scaffold_106 . exon 50483 50644 . + . ID=Physo141958.2;Parent=Physo141958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_106 . CDS 50721 53274 . + 0 ID=Physo141958;Parent=Physo141958;rank=3 scaffold_106 . exon 50721 53274 . + . ID=Physo141958.3;Parent=Physo141958;constitutive=1;ensembl_phase=2;rank=3 scaffold_106 . CDS 53353 53490 . + 0 ID=Physo141958;Parent=Physo141958;rank=4 scaffold_106 . exon 53353 53649 . + . ID=Physo141958.4;Parent=Physo141958;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_106 ensembl protein_coding_gene 54644 56601 . - . ID=Physo141959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060018;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 54644 56601 . - . ID=Physo141959;Parent=Physo141959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 54644 54688 . - 0 ID=Physo141959;Parent=Physo141959;rank=2 scaffold_106 . exon 54644 54688 . - . ID=Physo141959.2;Parent=Physo141959;constitutive=1;rank=2 scaffold_106 . CDS 54808 56601 . - 0 ID=Physo141959;Parent=Physo141959;rank=1 scaffold_106 . exon 54808 56601 . - . ID=Physo141959.1;Parent=Physo141959;constitutive=1;rank=1 scaffold_106 . repeat_region 63121 63159 . ? . description=trf scaffold_106 . repeat_region 66441 66541 . ? . description=trf scaffold_106 ensembl protein_coding_gene 61655 63067 . - . ID=Physo109435;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1060003;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 61655 63067 . - . ID=Physo109435;Parent=Physo109435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 61655 62896 . - 0 ID=Physo109435;Parent=Physo109435;rank=1 scaffold_106 . exon 61655 63067 . - . ID=Physo109435.1;Parent=Physo109435;constitutive=1;ensembl_phase=-1;rank=1 scaffold_106 ensembl protein_coding_gene 59421 60236 . + . ID=Physo141960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060019;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 59421 60236 . + . ID=Physo141960;Parent=Physo141960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 59421 60128 . + 0 ID=Physo141960;Parent=Physo141960;rank=1 scaffold_106 . exon 59421 60236 . + . ID=Physo141960.1;Parent=Physo141960;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_106 ensembl protein_coding_gene 63329 65394 . - . ID=Physo141962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060021;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 63329 65394 . - . ID=Physo141962;Parent=Physo141962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 63329 65394 . - . ID=Physo141962.1;Parent=Physo141962;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_106 . CDS 63478 65394 . - 0 ID=Physo141962;Parent=Physo141962;rank=1 scaffold_106 ensembl protein_coding_gene 66754 68060 . - . ID=Physo141963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060022;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 66754 68060 . - . ID=Physo141963;Parent=Physo141963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 66754 66918 . - 0 ID=Physo141963;Parent=Physo141963;rank=3 scaffold_106 . exon 66754 66918 . - . ID=Physo141963.3;Parent=Physo141963;constitutive=1;rank=3 scaffold_106 . CDS 67003 67900 . - 0 ID=Physo141963;Parent=Physo141963;rank=2 scaffold_106 . exon 67003 67900 . - . ID=Physo141963.2;Parent=Physo141963;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . CDS 67981 68060 . - 0 ID=Physo141963;Parent=Physo141963;rank=1 scaffold_106 . exon 67981 68060 . - . ID=Physo141963.1;Parent=Physo141963;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 ensembl protein_coding_gene 68520 70952 . + . ID=Physo141964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060023;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 68520 70952 . + . ID=Physo141964;Parent=Physo141964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 68520 70952 . + 0 ID=Physo141964;Parent=Physo141964;rank=1 scaffold_106 . exon 68520 70952 . + . ID=Physo141964.1;Parent=Physo141964;constitutive=1;rank=1 scaffold_106 . biological_region 68626 68628 0.999 - . logic_name=eponine scaffold_106 . biological_region 68653 68656 0.999 - . logic_name=eponine scaffold_106 . biological_region 68688 68691 0.999 + . logic_name=eponine scaffold_106 . biological_region 68689 68693 0.999 - . logic_name=eponine scaffold_106 . biological_region 68706 68707 0.999 + . logic_name=eponine scaffold_106 . biological_region 68727 68738 0.999 - . logic_name=eponine scaffold_106 . biological_region 68745 68748 0.999 + . logic_name=eponine scaffold_106 . biological_region 68785 68794 0.999 + . logic_name=eponine scaffold_106 . biological_region 68818 68826 0.999 + . logic_name=eponine scaffold_106 . biological_region 68853 68858 0.999 + . logic_name=eponine scaffold_106 . biological_region 69328 69332 0.999 + . logic_name=eponine scaffold_106 . biological_region 69446 69452 0.999 + . logic_name=eponine scaffold_106 . biological_region 70805 70808 0.999 + . logic_name=eponine scaffold_106 . biological_region 73285 73289 0.999 + . logic_name=eponine scaffold_106 ensembl protein_coding_gene 71184 71501 . + . ID=Physo141965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060024;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 71184 71501 . + . ID=Physo141965;Parent=Physo141965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 71184 71501 . + 0 ID=Physo141965;Parent=Physo141965;rank=1 scaffold_106 . exon 71184 71501 . + . ID=Physo141965.1;Parent=Physo141965;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 75551 77918 . + . ID=Physo141966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060025;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 75551 77918 . + . ID=Physo141966;Parent=Physo141966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 75551 76590 . + 0 ID=Physo141966;Parent=Physo141966;rank=1 scaffold_106 . exon 75551 76590 . + . ID=Physo141966.1;Parent=Physo141966;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 . CDS 76817 77918 . + 0 ID=Physo141966;Parent=Physo141966;rank=2 scaffold_106 . exon 76817 77918 . + . ID=Physo141966.2;Parent=Physo141966;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . repeat_region 78880 78978 . ? . description=trf scaffold_106 . repeat_region 78963 79093 . ? . description=trf scaffold_106 . repeat_region 81855 81874 . ? . description=dust scaffold_106 . repeat_region 81855 81874 . ? . description=trf scaffold_106 . repeat_region 82223 82281 . ? . description=trf scaffold_106 . repeat_region 83067 83074 . ? . description=dust scaffold_106 . repeat_region 84103 84111 . ? . description=dust scaffold_106 . repeat_region 86229 86290 . ? . description=trf scaffold_106 . repeat_region 86584 86734 . ? . description=trf scaffold_106 . repeat_region 86859 86936 . ? . description=trf scaffold_106 ensembl protein_coding_gene 79175 80569 . - . ID=Physo141967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060026;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 79175 80569 . - . ID=Physo141967;Parent=Physo141967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 79175 79322 . - 0 ID=Physo141967;Parent=Physo141967;rank=3 scaffold_106 . exon 79175 79322 . - . ID=Physo141967.3;Parent=Physo141967;constitutive=1;ensembl_phase=2;rank=3 scaffold_106 . CDS 79536 79543 . - 0 ID=Physo141967;Parent=Physo141967;rank=2 scaffold_106 . exon 79536 79543 . - . ID=Physo141967.2;Parent=Physo141967;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_106 . CDS 79613 80569 . - 0 ID=Physo141967;Parent=Physo141967;rank=1 scaffold_106 . exon 79613 80569 . - . ID=Physo141967.1;Parent=Physo141967;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 85823 86452 . - . ID=Physo141968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060027;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 85823 86452 . - . ID=Physo141968;Parent=Physo141968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 85823 86452 . - 0 ID=Physo141968;Parent=Physo141968;rank=1 scaffold_106 . exon 85823 86452 . - . ID=Physo141968.1;Parent=Physo141968;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 87444 88205 . + . ID=Physo141969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060028;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 87444 88205 . + . ID=Physo141969;Parent=Physo141969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 87444 87448 . + 0 ID=Physo141969;Parent=Physo141969;rank=1 scaffold_106 . exon 87444 87448 . + . ID=Physo141969.1;Parent=Physo141969;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 . CDS 87509 87519 . + 0 ID=Physo141969;Parent=Physo141969;rank=2 scaffold_106 . exon 87509 87519 . + . ID=Physo141969.2;Parent=Physo141969;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_106 . CDS 87683 87840 . + 0 ID=Physo141969;Parent=Physo141969;rank=3 scaffold_106 . exon 87683 87840 . + . ID=Physo141969.3;Parent=Physo141969;constitutive=1;ensembl_phase=1;rank=3 scaffold_106 . CDS 87918 88205 . + 0 ID=Physo141969;Parent=Physo141969;rank=4 scaffold_106 . exon 87918 88205 . + . ID=Physo141969.4;Parent=Physo141969;constitutive=1;rank=4 scaffold_106 . biological_region 91067 91068 0.999 - . logic_name=eponine scaffold_106 . biological_region 93548 93554 0.999 - . logic_name=eponine scaffold_106 . biological_region 93568 93577 0.999 - . logic_name=eponine scaffold_106 . biological_region 93590 93592 0.999 - . logic_name=eponine scaffold_106 . biological_region 94315 94319 0.999 - . logic_name=eponine scaffold_106 . biological_region 94843 94848 0.999 + . logic_name=eponine scaffold_106 . biological_region 94877 94881 0.999 + . logic_name=eponine scaffold_106 . biological_region 94953 94959 0.999 - . logic_name=eponine scaffold_106 ensembl protein_coding_gene 93906 95015 . + . ID=Physo141970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060029;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 93906 95015 . + . ID=Physo141970;Parent=Physo141970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 93906 94228 . + 0 ID=Physo141970;Parent=Physo141970;rank=1 scaffold_106 . exon 93906 94228 . + . ID=Physo141970.1;Parent=Physo141970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 . CDS 94261 94459 . + 0 ID=Physo141970;Parent=Physo141970;rank=2 scaffold_106 . exon 94261 94459 . + . ID=Physo141970.2;Parent=Physo141970;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . CDS 94581 95015 . + 0 ID=Physo141970;Parent=Physo141970;rank=3 scaffold_106 . exon 94581 95015 . + . ID=Physo141970.3;Parent=Physo141970;constitutive=1;rank=3 scaffold_106 ensembl protein_coding_gene 95384 96665 . - . ID=Physo141971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060030;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 95384 96665 . - . ID=Physo141971;Parent=Physo141971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 95384 95803 . - 0 ID=Physo141971;Parent=Physo141971;rank=5 scaffold_106 . exon 95384 95803 . - . ID=Physo141971.5;Parent=Physo141971;constitutive=1;rank=5 scaffold_106 . CDS 95946 95973 . - 0 ID=Physo141971;Parent=Physo141971;rank=4 scaffold_106 . exon 95946 95973 . - . ID=Physo141971.4;Parent=Physo141971;constitutive=1;ensembl_phase=2;rank=4 scaffold_106 . CDS 96011 96370 . - 0 ID=Physo141971;Parent=Physo141971;rank=3 scaffold_106 . exon 96011 96370 . - . ID=Physo141971.3;Parent=Physo141971;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_106 . CDS 96432 96520 . - 0 ID=Physo141971;Parent=Physo141971;rank=2 scaffold_106 . exon 96432 96520 . - . ID=Physo141971.2;Parent=Physo141971;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_106 . CDS 96564 96665 . - 0 ID=Physo141971;Parent=Physo141971;rank=1 scaffold_106 . exon 96564 96665 . - . ID=Physo141971.1;Parent=Physo141971;constitutive=1;rank=1 scaffold_106 . repeat_region 102351 102426 . ? . description=trf scaffold_106 . repeat_region 107456 107504 . ? . description=dust scaffold_106 . repeat_region 107463 107503 . ? . description=trf scaffold_106 . repeat_region 107465 107500 . ? . description=trf scaffold_106 ensembl protein_coding_gene 103234 104326 . - . ID=Physo141972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060031;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 103234 104326 . - . ID=Physo141972;Parent=Physo141972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 103234 104326 . - . ID=Physo141972.1;Parent=Physo141972;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_106 . CDS 103280 104326 . - 0 ID=Physo141972;Parent=Physo141972;rank=1 scaffold_106 ensembl protein_coding_gene 104518 105663 . - . ID=Physo141973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060032;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 104518 105663 . - . ID=Physo141973;Parent=Physo141973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 104518 105597 . - 0 ID=Physo141973;Parent=Physo141973;rank=1 scaffold_106 . exon 104518 105663 . - . ID=Physo141973.1;Parent=Physo141973;constitutive=1;ensembl_phase=-1;rank=1 scaffold_106 ensembl protein_coding_gene 106168 108118 . - . ID=Physo141974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060033;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 106168 108118 . - . ID=Physo141974;Parent=Physo141974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 106168 108118 . - . ID=Physo141974.1;Parent=Physo141974;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_106 . CDS 106325 108070 . - 0 ID=Physo141974;Parent=Physo141974;rank=1 scaffold_106 . biological_region 108821 108825 0.999 - . logic_name=eponine scaffold_106 . biological_region 113952 113953 0.999 + . logic_name=eponine scaffold_106 . biological_region 115283 115290 0.999 + . logic_name=eponine scaffold_106 . biological_region 115319 115322 0.999 + . logic_name=eponine scaffold_106 ensembl protein_coding_gene 110148 111986 . - . ID=Physo141975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060034;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 110148 111986 . - . ID=Physo141975;Parent=Physo141975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 110148 111986 . - 0 ID=Physo141975;Parent=Physo141975;rank=1 scaffold_106 . exon 110148 111986 . - . ID=Physo141975.1;Parent=Physo141975;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 113735 114778 . - . ID=Physo141976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060035;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 113735 114778 . - . ID=Physo141976;Parent=Physo141976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 113735 114778 . - 0 ID=Physo141976;Parent=Physo141976;rank=1 scaffold_106 . exon 113735 114778 . - . ID=Physo141976.1;Parent=Physo141976;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 115213 121341 . + . ID=Physo141977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060036;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 115213 121341 . + . ID=Physo141977;Parent=Physo141977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 115213 115700 . + 0 ID=Physo141977;Parent=Physo141977;rank=1 scaffold_106 . exon 115213 115700 . + . ID=Physo141977.1;Parent=Physo141977;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 . CDS 115785 121341 . + 0 ID=Physo141977;Parent=Physo141977;rank=2 scaffold_106 . exon 115785 121341 . + . ID=Physo141977.2;Parent=Physo141977;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . repeat_region 123680 123699 . ? . description=trf scaffold_106 ensembl protein_coding_gene 127131 127820 . + . ID=Physo141978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060037;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 127131 127820 . + . ID=Physo141978;Parent=Physo141978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 127131 127820 . + 0 ID=Physo141978;Parent=Physo141978;rank=1 scaffold_106 . exon 127131 127820 . + . ID=Physo141978.1;Parent=Physo141978;constitutive=1;rank=1 scaffold_106 . repeat_region 129218 129236 . ? . description=dust scaffold_106 . biological_region 130169 130173 0.999 + . logic_name=eponine scaffold_106 ensembl protein_coding_gene 128170 128840 . + . ID=Physo141979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060038;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 128170 128840 . + . ID=Physo141979;Parent=Physo141979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 128170 128380 . + 0 ID=Physo141979;Parent=Physo141979;rank=1 scaffold_106 . exon 128170 128380 . + . ID=Physo141979.1;Parent=Physo141979;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 . CDS 128451 128524 . + 0 ID=Physo141979;Parent=Physo141979;rank=2 scaffold_106 . exon 128451 128524 . + . ID=Physo141979.2;Parent=Physo141979;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 128610 128840 . + 0 ID=Physo141979;Parent=Physo141979;rank=3 scaffold_106 . exon 128610 128840 . + . ID=Physo141979.3;Parent=Physo141979;constitutive=1;rank=3 scaffold_106 ensembl protein_coding_gene 130127 130571 . + . ID=Physo141980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060039;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 130127 130571 . + . ID=Physo141980;Parent=Physo141980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 130127 130397 . + . ID=Physo141980.1;Parent=Physo141980;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_106 . CDS 130129 130397 . + 0 ID=Physo141980;Parent=Physo141980;rank=1 scaffold_106 . CDS 130483 130570 . + 0 ID=Physo141980;Parent=Physo141980;rank=2 scaffold_106 . exon 130483 130571 . + . ID=Physo141980.2;Parent=Physo141980;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_106 ensembl protein_coding_gene 130657 134339 . - . ID=Physo141981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060040;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 130657 134339 . - . ID=Physo141981;Parent=Physo141981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 130657 133108 . - . ID=Physo141981.7;Parent=Physo141981;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_106 . CDS 130747 133108 . - 0 ID=Physo141981;Parent=Physo141981;rank=7 scaffold_106 . CDS 133191 133309 . - 0 ID=Physo141981;Parent=Physo141981;rank=6 scaffold_106 . exon 133191 133309 . - . ID=Physo141981.6;Parent=Physo141981;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_106 . CDS 133540 133567 . - 0 ID=Physo141981;Parent=Physo141981;rank=5 scaffold_106 . exon 133540 133567 . - . ID=Physo141981.5;Parent=Physo141981;constitutive=1;ensembl_phase=2;rank=5 scaffold_106 . CDS 133654 133836 . - 0 ID=Physo141981;Parent=Physo141981;rank=4 scaffold_106 . exon 133654 133836 . - . ID=Physo141981.4;Parent=Physo141981;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_106 . CDS 133902 134016 . - 0 ID=Physo141981;Parent=Physo141981;rank=3 scaffold_106 . exon 133902 134016 . - . ID=Physo141981.3;Parent=Physo141981;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_106 . CDS 134110 134179 . - 0 ID=Physo141981;Parent=Physo141981;rank=2 scaffold_106 . exon 134110 134179 . - . ID=Physo141981.2;Parent=Physo141981;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_106 . CDS 134259 134339 . - 0 ID=Physo141981;Parent=Physo141981;rank=1 scaffold_106 . exon 134259 134339 . - . ID=Physo141981.1;Parent=Physo141981;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 134761 137491 . + . ID=Physo141982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060041;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 134761 137491 . + . ID=Physo141982;Parent=Physo141982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 134761 136836 . + 0 ID=Physo141982;Parent=Physo141982;rank=1 scaffold_106 . exon 134761 136836 . + . ID=Physo141982.1;Parent=Physo141982;constitutive=1;rank=1 scaffold_106 . CDS 136910 137137 . + 0 ID=Physo141982;Parent=Physo141982;rank=2 scaffold_106 . exon 136910 137137 . + . ID=Physo141982.2;Parent=Physo141982;constitutive=1;rank=2 scaffold_106 . CDS 137324 137491 . + 0 ID=Physo141982;Parent=Physo141982;rank=3 scaffold_106 . repeat_region 143746 143798 . ? . description=trf scaffold_106 . repeat_region 143818 143854 . ? . description=trf scaffold_106 . repeat_region 146908 146970 . ? . description=trf scaffold_106 . exon 137324 137491 . + . ID=Physo141982.3;Parent=Physo141982;constitutive=1;rank=3 scaffold_106 ensembl protein_coding_gene 139410 140504 . - . ID=Physo141983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060042;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 139410 140504 . - . ID=Physo141983;Parent=Physo141983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 139410 140060 . - 0 ID=Physo141983;Parent=Physo141983;rank=3 scaffold_106 . exon 139410 140060 . - . ID=Physo141983.3;Parent=Physo141983;constitutive=1;rank=3 scaffold_106 . CDS 140142 140212 . - 0 ID=Physo141983;Parent=Physo141983;rank=2 scaffold_106 . exon 140142 140212 . - . ID=Physo141983.2;Parent=Physo141983;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 140288 140504 . - 0 ID=Physo141983;Parent=Physo141983;rank=1 scaffold_106 . exon 140288 140504 . - . ID=Physo141983.1;Parent=Physo141983;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 ensembl protein_coding_gene 141863 142574 . - . ID=Physo141984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060043;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 141863 142574 . - . ID=Physo141984;Parent=Physo141984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 141863 142159 . - 0 ID=Physo141984;Parent=Physo141984;rank=3 scaffold_106 . exon 141863 142159 . - . ID=Physo141984.3;Parent=Physo141984;constitutive=1;rank=3 scaffold_106 . CDS 142222 142295 . - 0 ID=Physo141984;Parent=Physo141984;rank=2 scaffold_106 . exon 142222 142295 . - . ID=Physo141984.2;Parent=Physo141984;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 142364 142574 . - 0 ID=Physo141984;Parent=Physo141984;rank=1 scaffold_106 . exon 142364 142574 . - . ID=Physo141984.1;Parent=Physo141984;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 ensembl protein_coding_gene 142956 144557 . - . ID=Physo141985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060044;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 142956 144557 . - . ID=Physo141985;Parent=Physo141985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 142956 144098 . - 0 ID=Physo141985;Parent=Physo141985;rank=3 scaffold_106 . exon 142956 144098 . - . ID=Physo141985.3;Parent=Physo141985;constitutive=1;rank=3 scaffold_106 . CDS 144179 144228 . - 0 ID=Physo141985;Parent=Physo141985;rank=2 scaffold_106 . exon 144179 144228 . - . ID=Physo141985.2;Parent=Physo141985;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 144344 144557 . - 0 ID=Physo141985;Parent=Physo141985;rank=1 scaffold_106 . exon 144344 144557 . - . ID=Physo141985.1;Parent=Physo141985;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 ensembl protein_coding_gene 145537 147643 . - . ID=Physo158443;biotype=protein_coding;external_name=C_scaffold_106000014;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 145537 147643 . - . ID=Physo158443;Parent=Physo158443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 145537 145840 . - 0 ID=Physo158443;Parent=Physo158443;rank=6 scaffold_106 . exon 145537 145840 . - . ID=Physo158443.6;Parent=Physo158443;constitutive=1;ensembl_phase=2;rank=6 scaffold_106 . CDS 146396 146677 . - 0 ID=Physo158443;Parent=Physo158443;rank=5 scaffold_106 . exon 146396 146677 . - . ID=Physo158443.5;Parent=Physo158443;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_106 . CDS 146709 146978 . - 0 ID=Physo158443;Parent=Physo158443;rank=4 scaffold_106 . exon 146709 146978 . - . ID=Physo158443.4;Parent=Physo158443;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_106 . CDS 147062 147225 . - 0 ID=Physo158443;Parent=Physo158443;rank=3 scaffold_106 . CDS 147289 147359 . - 0 ID=Physo158443;Parent=Physo158443;rank=2 scaffold_106 . CDS 147433 147643 . - 0 ID=Physo158443;Parent=Physo158443;rank=1 scaffold_106 . biological_region 148374 148376 0.999 - . logic_name=eponine scaffold_106 . biological_region 149139 149140 0.999 + . logic_name=eponine scaffold_106 . biological_region 149270 149273 0.999 - . logic_name=eponine scaffold_106 . repeat_region 149376 149493 . ? . description=dust scaffold_106 . biological_region 152200 152203 0.999 - . logic_name=eponine scaffold_106 . repeat_region 153526 153589 . ? . description=dust scaffold_106 . biological_region 155264 155268 0.999 + . logic_name=eponine scaffold_106 ensembl tRNA_gene 149303 149372 . + . ID=EPrPSOG00000000048;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_106 ensembl transcript 149303 149372 . + . ID=EPrPSOT00000000048;Parent=EPrPSOG00000000048;biotype=tRNA;logic_name=ncrna_eg scaffold_106 . exon 149303 149372 . + . ID=EPrPSOE00000000048;Parent=EPrPSOT00000000048;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 ensembl protein_coding_gene 154576 158370 . - . ID=Physo141988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060047;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 154576 158370 . - . ID=Physo141988;Parent=Physo141988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 154576 158370 . - 0 ID=Physo141988;Parent=Physo141988;rank=1 scaffold_106 . exon 154576 158370 . - . ID=Physo141988.1;Parent=Physo141988;constitutive=1;rank=1 scaffold_106 . exon 147062 147225 . - . ID=Physo158443.3;Parent=Physo158443;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_106 . exon 147289 147359 . - . ID=Physo158443.2;Parent=Physo158443;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 . exon 147433 147643 . - . ID=Physo158443.1;Parent=Physo158443;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 ensembl protein_coding_gene 152726 154197 . + . ID=Physo158444;biotype=protein_coding;external_name=C_scaffold_106000015;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 152726 154197 . + . ID=Physo158444;Parent=Physo158444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 152726 152945 . + 0 ID=Physo158444;Parent=Physo158444;rank=1 scaffold_106 . exon 152726 152945 . + . ID=Physo158444.1;Parent=Physo158444;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 . CDS 153032 153102 . + 0 ID=Physo158444;Parent=Physo158444;rank=2 scaffold_106 . exon 153032 153102 . + . ID=Physo158444.2;Parent=Physo158444;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 153199 154197 . + 0 ID=Physo158444;Parent=Physo158444;rank=3 scaffold_106 . exon 153199 154197 . + . ID=Physo158444.3;Parent=Physo158444;constitutive=1;rank=3 scaffold_106 . repeat_region 159657 159896 . ? . description=trf scaffold_106 ensembl protein_coding_gene 166527 169654 . + . ID=Physo141989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060048;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 166527 169654 . + . ID=Physo141989;Parent=Physo141989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 166527 169418 . + 0 ID=Physo141989;Parent=Physo141989;rank=1 scaffold_106 . exon 166527 169654 . + . ID=Physo141989.1;Parent=Physo141989;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_106 . repeat_region 169751 169800 . ? . description=dust scaffold_106 . biological_region 169877 169877 0.999 - . logic_name=eponine scaffold_106 . biological_region 169900 169902 0.999 + . logic_name=eponine scaffold_106 . biological_region 170192 170197 0.999 + . logic_name=eponine scaffold_106 . biological_region 170227 170228 0.999 + . logic_name=eponine scaffold_106 . biological_region 170245 170250 0.999 - . logic_name=eponine scaffold_106 . repeat_region 172628 172635 . ? . description=dust scaffold_106 . biological_region 175238 175241 0.999 + . logic_name=eponine scaffold_106 . biological_region 175953 175956 0.999 - . logic_name=eponine scaffold_106 . biological_region 176009 176013 0.999 + . logic_name=eponine scaffold_106 ensembl protein_coding_gene 169673 170733 . - . ID=Physo141990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060049;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 169673 170733 . - . ID=Physo141990;Parent=Physo141990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 169673 169702 . - 0 ID=Physo141990;Parent=Physo141990;rank=3 scaffold_106 . exon 169673 169702 . - . ID=Physo141990.3;Parent=Physo141990;constitutive=1;rank=3 scaffold_106 . CDS 169825 170509 . - 0 ID=Physo141990;Parent=Physo141990;rank=2 scaffold_106 . exon 169825 170509 . - . ID=Physo141990.2;Parent=Physo141990;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . CDS 170696 170733 . - 0 ID=Physo141990;Parent=Physo141990;rank=1 scaffold_106 . exon 170696 170733 . - . ID=Physo141990.1;Parent=Physo141990;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 ensembl protein_coding_gene 171086 171788 . + . ID=Physo141991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060050;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 171086 171788 . + . ID=Physo141991;Parent=Physo141991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 171086 171114 . + 0 ID=Physo141991;Parent=Physo141991;rank=1 scaffold_106 . exon 171086 171114 . + . ID=Physo141991.1;Parent=Physo141991;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_106 . CDS 171175 171406 . + 0 ID=Physo141991;Parent=Physo141991;rank=2 scaffold_106 . exon 171175 171406 . + . ID=Physo141991.2;Parent=Physo141991;constitutive=1;ensembl_phase=2;rank=2 scaffold_106 . CDS 171469 171530 . + 0 ID=Physo141991;Parent=Physo141991;rank=3 scaffold_106 . exon 171469 171530 . + . ID=Physo141991.3;Parent=Physo141991;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_106 . CDS 171572 171788 . + 0 ID=Physo141991;Parent=Physo141991;rank=4 scaffold_106 . exon 171572 171788 . + . ID=Physo141991.4;Parent=Physo141991;constitutive=1;ensembl_phase=2;rank=4 scaffold_106 ensembl protein_coding_gene 172888 175874 . - . ID=Physo141992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060051;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 172888 175874 . - . ID=Physo141992;Parent=Physo141992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 172888 172990 . - 0 ID=Physo141992;Parent=Physo141992;rank=6 scaffold_106 . exon 172888 172990 . - . ID=Physo141992.6;Parent=Physo141992;constitutive=1;ensembl_phase=2;rank=6 scaffold_106 . CDS 173083 173396 . - 0 ID=Physo141992;Parent=Physo141992;rank=5 scaffold_106 . exon 173083 173396 . - . ID=Physo141992.5;Parent=Physo141992;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_106 . CDS 173474 173892 . - 0 ID=Physo141992;Parent=Physo141992;rank=4 scaffold_106 . exon 173474 173892 . - . ID=Physo141992.4;Parent=Physo141992;constitutive=1;ensembl_phase=1;rank=4 scaffold_106 . CDS 174111 174389 . - 0 ID=Physo141992;Parent=Physo141992;rank=3 scaffold_106 . exon 174111 174389 . - . ID=Physo141992.3;Parent=Physo141992;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_106 . CDS 174661 175569 . - 0 ID=Physo141992;Parent=Physo141992;rank=2 scaffold_106 . exon 174661 175569 . - . ID=Physo141992.2;Parent=Physo141992;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 175658 175874 . - 0 ID=Physo141992;Parent=Physo141992;rank=1 scaffold_106 . exon 175658 175874 . - . ID=Physo141992.1;Parent=Physo141992;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 ensembl protein_coding_gene 177052 177851 . + . ID=Physo141993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060052;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 177052 177851 . + . ID=Physo141993;Parent=Physo141993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 177052 177168 . + 0 ID=Physo141993;Parent=Physo141993;rank=1 scaffold_106 . exon 177052 177168 . + . ID=Physo141993.1;Parent=Physo141993;constitutive=1;rank=1 scaffold_106 . CDS 177236 177610 . + 0 ID=Physo141993;Parent=Physo141993;rank=2 scaffold_106 . exon 177236 177610 . + . ID=Physo141993.2;Parent=Physo141993;constitutive=1;rank=2 scaffold_106 . CDS 177708 177851 . + 0 ID=Physo141993;Parent=Physo141993;rank=3 scaffold_106 . exon 177708 177851 . + . ID=Physo141993.3;Parent=Physo141993;constitutive=1;rank=3 scaffold_106 ensembl protein_coding_gene 178575 183870 . + . ID=Physo141994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060053;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 178575 183870 . + . ID=Physo141994;Parent=Physo141994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 178575 182268 . + . ID=Physo141994.1;Parent=Physo141994;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_106 . CDS 178818 182268 . + 0 ID=Physo141994;Parent=Physo141994;rank=1 scaffold_106 . CDS 182396 182628 . + 0 ID=Physo141994;Parent=Physo141994;rank=2 scaffold_106 . exon 182396 182628 . + . ID=Physo141994.2;Parent=Physo141994;constitutive=1;ensembl_phase=1;rank=2 scaffold_106 . CDS 183175 183379 . + 0 ID=Physo141994;Parent=Physo141994;rank=3 scaffold_106 . exon 183175 183379 . + . ID=Physo141994.3;Parent=Physo141994;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_106 . CDS 183448 183521 . + 0 ID=Physo141994;Parent=Physo141994;rank=4 scaffold_106 . exon 183448 183521 . + . ID=Physo141994.4;Parent=Physo141994;constitutive=1;ensembl_phase=1;rank=4 scaffold_106 . CDS 183598 183870 . + 0 ID=Physo141994;Parent=Physo141994;rank=5 scaffold_106 . exon 183598 183870 . + . ID=Physo141994.5;Parent=Physo141994;constitutive=1;rank=5 scaffold_106 . biological_region 186894 186897 0.999 - . logic_name=eponine scaffold_106 . repeat_region 187437 187444 . ? . description=dust scaffold_106 . repeat_region 190450 190473 . ? . description=dust scaffold_106 . repeat_region 190450 190473 . ? . description=trf scaffold_106 . biological_region 192967 192968 0.999 + . logic_name=eponine scaffold_106 ensembl protein_coding_gene 194506 195951 . - . ID=Physo141996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060055;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 194506 195951 . - . ID=Physo141996;Parent=Physo141996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 194506 195951 . - 0 ID=Physo141996;Parent=Physo141996;rank=1 scaffold_106 . exon 194506 195951 . - . ID=Physo141996.1;Parent=Physo141996;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 188641 190077 . + . ID=Physo158446;biotype=protein_coding;external_name=C_scaffold_106000017;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 188641 190077 . + . ID=Physo158446;Parent=Physo158446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 188641 190077 . + 0 ID=Physo158446;Parent=Physo158446;rank=1 scaffold_106 . exon 188641 190077 . + . ID=Physo158446.1;Parent=Physo158446;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 199125 200676 . - . ID=Physo141997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060056;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 199125 200676 . - . ID=Physo141997;Parent=Physo141997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 199125 199608 . - 0 ID=Physo141997;Parent=Physo141997;rank=3 scaffold_106 . exon 199125 199608 . - . ID=Physo141997.3;Parent=Physo141997;constitutive=1;ensembl_phase=2;rank=3 scaffold_106 . CDS 199785 200353 . - 0 ID=Physo141997;Parent=Physo141997;rank=2 scaffold_106 . exon 199785 200353 . - . ID=Physo141997.2;Parent=Physo141997;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_106 . CDS 200473 200676 . - 0 ID=Physo141997;Parent=Physo141997;rank=1 scaffold_106 . exon 200473 200676 . - . ID=Physo141997.1;Parent=Physo141997;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 204696 208867 . + . ID=Physo141998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060057;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 204696 208867 . + . ID=Physo141998;Parent=Physo141998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 204696 204894 . + 0 ID=Physo141998;Parent=Physo141998;rank=1 scaffold_106 . exon 204696 204894 . + . ID=Physo141998.1;Parent=Physo141998;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_106 . CDS 204918 207492 . + 0 ID=Physo141998;Parent=Physo141998;rank=2 scaffold_106 . exon 204918 207492 . + . ID=Physo141998.2;Parent=Physo141998;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_106 . CDS 207518 208712 . + 0 ID=Physo141998;Parent=Physo141998;rank=3 scaffold_106 . CDS 208856 208867 . + 0 ID=Physo141998;Parent=Physo141998;rank=4 scaffold_106 . biological_region 205858 205864 0.999 + . logic_name=eponine scaffold_106 . repeat_region 206414 206475 . ? . description=trf scaffold_106 . repeat_region 206876 206918 . ? . description=trf scaffold_106 . biological_region 206974 206979 0.999 + . logic_name=eponine scaffold_106 . biological_region 207025 207027 0.999 - . logic_name=eponine scaffold_106 . biological_region 207059 207062 0.999 - . logic_name=eponine scaffold_106 . biological_region 207084 207086 0.999 + . logic_name=eponine scaffold_106 . repeat_region 207086 208451 . + . description=GypsyPi-1c_I-int scaffold_106 . repeat_region 208698 208838 . + . description=GypsyPi-1c_I-int scaffold_106 . biological_region 208733 208736 0.999 - . logic_name=eponine scaffold_106 . repeat_region 211027 211039 . ? . description=dust scaffold_106 . biological_region 212147 212149 0.999 + . logic_name=eponine scaffold_106 . repeat_region 212161 212212 . ? . description=trf scaffold_106 . biological_region 213071 213072 0.999 + . logic_name=eponine scaffold_106 . repeat_region 213345 213353 . ? . description=dust scaffold_106 . exon 207518 208712 . + . ID=Physo141998.3;Parent=Physo141998;constitutive=1;ensembl_phase=2;rank=3 scaffold_106 . exon 208856 208867 . + . ID=Physo141998.4;Parent=Physo141998;constitutive=1;rank=4 scaffold_106 ensembl protein_coding_gene 222179 224435 . + . ID=Physo141999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060058;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 222179 224435 . + . ID=Physo141999;Parent=Physo141999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 222179 223528 . + 0 ID=Physo141999;Parent=Physo141999;rank=1 scaffold_106 . exon 222179 223528 . + . ID=Physo141999.1;Parent=Physo141999;constitutive=1;rank=1 scaffold_106 . CDS 223675 224101 . + 0 ID=Physo141999;Parent=Physo141999;rank=2 scaffold_106 . exon 223675 224101 . + . ID=Physo141999.2;Parent=Physo141999;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_106 . CDS 224224 224435 . + 0 ID=Physo141999;Parent=Physo141999;rank=3 scaffold_106 . exon 224224 224435 . + . ID=Physo141999.3;Parent=Physo141999;constitutive=1;ensembl_phase=1;rank=3 scaffold_106 . biological_region 230687 230690 0.999 + . logic_name=eponine scaffold_106 . repeat_region 232281 232345 . ? . description=dust scaffold_106 . repeat_region 232281 232362 . ? . description=trf scaffold_106 . biological_region 232961 232962 0.999 - . logic_name=eponine scaffold_106 . biological_region 234712 234718 0.999 + . logic_name=eponine scaffold_106 ensembl protein_coding_gene 226716 230163 . + . ID=Physo142000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060059;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 226716 230163 . + . ID=Physo142000;Parent=Physo142000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 226716 227714 . + 0 ID=Physo142000;Parent=Physo142000;rank=1 scaffold_106 . exon 226716 227714 . + . ID=Physo142000.1;Parent=Physo142000;constitutive=1;rank=1 scaffold_106 . CDS 227864 229665 . + 0 ID=Physo142000;Parent=Physo142000;rank=2 scaffold_106 . exon 227864 229665 . + . ID=Physo142000.2;Parent=Physo142000;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_106 . CDS 229713 230163 . + 0 ID=Physo142000;Parent=Physo142000;rank=3 scaffold_106 . exon 229713 230163 . + . ID=Physo142000.3;Parent=Physo142000;constitutive=1;ensembl_phase=2;rank=3 scaffold_106 ensembl protein_coding_gene 231496 235157 . - . ID=Physo142001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060060;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 231496 235157 . - . ID=Physo142001;Parent=Physo142001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 231496 231761 . - 0 ID=Physo142001;Parent=Physo142001;rank=6 scaffold_106 . exon 231496 231761 . - . ID=Physo142001.6;Parent=Physo142001;constitutive=1;ensembl_phase=1;rank=6 scaffold_106 . CDS 231869 234166 . - 0 ID=Physo142001;Parent=Physo142001;rank=5 scaffold_106 . exon 231869 234166 . - . ID=Physo142001.5;Parent=Physo142001;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_106 . CDS 234244 234266 . - 0 ID=Physo142001;Parent=Physo142001;rank=4 scaffold_106 . exon 234244 234266 . - . ID=Physo142001.4;Parent=Physo142001;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_106 . CDS 234310 234767 . - 0 ID=Physo142001;Parent=Physo142001;rank=3 scaffold_106 . exon 234310 234767 . - . ID=Physo142001.3;Parent=Physo142001;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_106 . CDS 234962 235057 . - 0 ID=Physo142001;Parent=Physo142001;rank=2 scaffold_106 . exon 234962 235057 . - . ID=Physo142001.2;Parent=Physo142001;constitutive=1;rank=2 scaffold_106 . CDS 235125 235157 . - 0 ID=Physo142001;Parent=Physo142001;rank=1 scaffold_106 . exon 235125 235157 . - . ID=Physo142001.1;Parent=Physo142001;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 240772 242061 . - . ID=Physo142002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060061;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 240772 242061 . - . ID=Physo142002;Parent=Physo142002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 240772 242061 . - 0 ID=Physo142002;Parent=Physo142002;rank=1 scaffold_106 . exon 240772 242061 . - . ID=Physo142002.1;Parent=Physo142002;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 242897 243834 . + . ID=Physo142003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060062;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 242897 243834 . + . ID=Physo142003;Parent=Physo142003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 242897 243406 . + 0 ID=Physo142003;Parent=Physo142003;rank=1 scaffold_106 . exon 242897 243406 . + . ID=Physo142003.1;Parent=Physo142003;constitutive=1;rank=1 scaffold_106 . CDS 243478 243834 . + 0 ID=Physo142003;Parent=Physo142003;rank=2 scaffold_106 . exon 243478 243834 . + . ID=Physo142003.2;Parent=Physo142003;constitutive=1;rank=2 scaffold_106 . biological_region 247749 247750 0.999 - . logic_name=eponine scaffold_106 . biological_region 247766 247769 0.999 - . logic_name=eponine scaffold_106 . biological_region 247805 247807 0.999 + . logic_name=eponine scaffold_106 . biological_region 247806 247809 0.999 - . logic_name=eponine scaffold_106 . repeat_region 248908 248945 . ? . description=trf scaffold_106 . biological_region 249284 249285 0.999 - . logic_name=eponine scaffold_106 . biological_region 249301 249304 0.999 - . logic_name=eponine scaffold_106 . biological_region 249341 249344 0.999 - . logic_name=eponine scaffold_106 . repeat_region 252406 252458 . ? . description=trf scaffold_106 . repeat_region 252406 252470 . ? . description=trf scaffold_106 . repeat_region 252414 252473 . ? . description=dust scaffold_106 . repeat_region 252482 252537 . ? . description=dust scaffold_106 . repeat_region 252490 252610 . ? . description=trf scaffold_106 . repeat_region 252490 252616 . ? . description=trf scaffold_106 . repeat_region 252544 252569 . ? . description=dust scaffold_106 . repeat_region 252544 252569 . ? . description=trf scaffold_106 . repeat_region 252575 252627 . ? . description=dust scaffold_106 . biological_region 252882 252885 0.999 - . logic_name=eponine scaffold_106 . biological_region 252903 252904 0.999 - . logic_name=eponine scaffold_106 . biological_region 252965 252969 0.999 - . logic_name=eponine scaffold_106 . repeat_region 253210 253224 . ? . description=dust scaffold_106 . repeat_region 253842 253894 . ? . description=trf scaffold_106 . repeat_region 253848 253896 . ? . description=trf scaffold_106 . repeat_region 253902 253956 . ? . description=dust scaffold_106 . biological_region 253955 253958 0.999 - . logic_name=eponine scaffold_106 . repeat_region 253958 254031 . ? . description=trf scaffold_106 . repeat_region 253966 254029 . ? . description=dust scaffold_106 . biological_region 253973 253975 0.999 - . logic_name=eponine scaffold_106 . biological_region 254592 254593 0.999 - . logic_name=eponine scaffold_106 ensembl protein_coding_gene 246379 247167 . + . ID=Physo122447;biotype=protein_coding;external_name=estExt_Genewise1.C_1060032;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 246379 247167 . + . ID=Physo122447;Parent=Physo122447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 246379 246675 . + . ID=Physo122447.1;Parent=Physo122447;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_106 . CDS 246543 246675 . + 0 ID=Physo122447;Parent=Physo122447;rank=1 scaffold_106 . CDS 246778 247031 . + 0 ID=Physo122447;Parent=Physo122447;rank=2 scaffold_106 . exon 246778 247167 . + . ID=Physo122447.2;Parent=Physo122447;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_106 ensembl protein_coding_gene 248855 250110 . + . ID=Physo142005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060064;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 248855 250110 . + . ID=Physo142005;Parent=Physo142005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . exon 248855 249457 . + . ID=Physo142005.1;Parent=Physo142005;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_106 . CDS 248890 249457 . + 0 ID=Physo142005;Parent=Physo142005;rank=1 scaffold_106 . CDS 249525 249684 . + 0 ID=Physo142005;Parent=Physo142005;rank=2 scaffold_106 . exon 249525 249684 . + . ID=Physo142005.2;Parent=Physo142005;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_106 . CDS 249760 249997 . + 0 ID=Physo142005;Parent=Physo142005;rank=3 scaffold_106 . exon 249760 250110 . + . ID=Physo142005.3;Parent=Physo142005;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_106 ensembl protein_coding_gene 250141 253187 . - . ID=Physo142006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060065;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 250141 253187 . - . ID=Physo142006;Parent=Physo142006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 250141 250564 . - 0 ID=Physo142006;Parent=Physo142006;rank=4 scaffold_106 . exon 250141 250564 . - . ID=Physo142006.4;Parent=Physo142006;constitutive=1;ensembl_phase=2;rank=4 scaffold_106 . CDS 250627 250736 . - 0 ID=Physo142006;Parent=Physo142006;rank=3 scaffold_106 . exon 250627 250736 . - . ID=Physo142006.3;Parent=Physo142006;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_106 . CDS 250814 250828 . - 0 ID=Physo142006;Parent=Physo142006;rank=2 scaffold_106 . exon 250814 250828 . - . ID=Physo142006.2;Parent=Physo142006;constitutive=1;rank=2 scaffold_106 . CDS 251055 253187 . - 0 ID=Physo142006;Parent=Physo142006;rank=1 scaffold_106 . exon 251055 253187 . - . ID=Physo142006.1;Parent=Physo142006;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 253551 254123 . - . ID=Physo158454;biotype=protein_coding;external_name=C_scaffold_106000025;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 253551 254123 . - . ID=Physo158454;Parent=Physo158454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 253551 254123 . - 0 ID=Physo158454;Parent=Physo158454;rank=1 scaffold_106 . exon 253551 254123 . - . ID=Physo158454.1;Parent=Physo158454;constitutive=1;rank=1 scaffold_106 ensembl protein_coding_gene 254297 255175 . + . ID=Physo158455;biotype=protein_coding;external_name=C_scaffold_106000026;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 254297 255175 . + . ID=Physo158455;Parent=Physo158455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 254297 254416 . + 0 ID=Physo158455;Parent=Physo158455;rank=1 scaffold_106 . exon 254297 254416 . + . ID=Physo158455.1;Parent=Physo158455;constitutive=1;rank=1 scaffold_106 . CDS 254494 254590 . + 0 ID=Physo158455;Parent=Physo158455;rank=2 scaffold_106 . exon 254494 254590 . + . ID=Physo158455.2;Parent=Physo158455;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_106 . CDS 254661 255175 . + 0 ID=Physo158455;Parent=Physo158455;rank=3 scaffold_106 . exon 254661 255175 . + . ID=Physo158455.3;Parent=Physo158455;constitutive=1;ensembl_phase=1;rank=3 scaffold_106 ensembl protein_coding_gene 255510 256979 . - . ID=Physo158457;biotype=protein_coding;external_name=C_scaffold_106000028;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 255510 256979 . - . ID=Physo158457;Parent=Physo158457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 255510 255836 . - 0 ID=Physo158457;Parent=Physo158457;rank=5 scaffold_106 . exon 255510 255836 . - . ID=Physo158457.5;Parent=Physo158457;constitutive=1;rank=5 scaffold_106 . CDS 255888 255991 . - 0 ID=Physo158457;Parent=Physo158457;rank=4 scaffold_106 . exon 255888 255991 . - . ID=Physo158457.4;Parent=Physo158457;constitutive=1;ensembl_phase=1;rank=4 scaffold_106 . CDS 256042 256143 . - 0 ID=Physo158457;Parent=Physo158457;rank=3 scaffold_106 . exon 256042 256143 . - . ID=Physo158457.3;Parent=Physo158457;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_106 . CDS 256183 256747 . - 0 ID=Physo158457;Parent=Physo158457;rank=2 scaffold_106 . exon 256183 256747 . - . ID=Physo158457.2;Parent=Physo158457;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_106 . CDS 256878 256979 . - 0 ID=Physo158457;Parent=Physo158457;rank=1 scaffold_106 . exon 256878 256979 . - . ID=Physo158457.1;Parent=Physo158457;constitutive=1;rank=1 scaffold_106 . repeat_region 265448 265457 . ? . description=dust scaffold_106 . biological_region 269070 269072 0.999 - . logic_name=eponine scaffold_106 . repeat_region 269319 270409 . ? . description=dust scaffold_106 ensembl protein_coding_gene 267262 268037 . + . ID=Physo142009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1060068;logic_name=jgi_physo1_1 scaffold_106 ensembl transcript 267262 268037 . + . ID=Physo142009;Parent=Physo142009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_106 . CDS 267262 267555 . + 0 ID=Physo142009;Parent=Physo142009;rank=1 scaffold_106 . exon 267262 267555 . + . ID=Physo142009.1;Parent=Physo142009;constitutive=1;rank=1 scaffold_106 . CDS 267582 268037 . + 0 ID=Physo142009;Parent=Physo142009;rank=2 scaffold_106 . exon 267582 268037 . + . ID=Physo142009.2;Parent=Physo142009;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_105 1 283472 scaffold_105 . repeat_region 3457 3608 . ? . description=dust scaffold_105 . biological_region 4791 4794 0.999 + . logic_name=eponine scaffold_105 . biological_region 4935 4937 0.999 + . logic_name=eponine scaffold_105 . biological_region 5183 5186 0.999 + . logic_name=eponine scaffold_105 . biological_region 5203 5208 0.999 - . logic_name=eponine scaffold_105 . biological_region 5226 5232 0.999 + . logic_name=eponine scaffold_105 . biological_region 5259 5262 0.999 + . logic_name=eponine scaffold_105 . biological_region 5340 5340 0.999 - . logic_name=eponine scaffold_105 . biological_region 9216 9220 0.999 + . logic_name=eponine scaffold_105 . repeat_region 9250 9276 . ? . description=trf scaffold_105 . biological_region 9273 9275 0.999 + . logic_name=eponine scaffold_105 . biological_region 9330 9334 0.999 - . logic_name=eponine scaffold_105 . biological_region 9373 9376 0.999 - . logic_name=eponine scaffold_105 . biological_region 9386 9389 0.999 - . logic_name=eponine scaffold_105 ensembl protein_coding_gene 4559 5846 . - . ID=Physo109429;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1050001;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 4559 5846 . - . ID=Physo109429;Parent=Physo109429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 4559 5846 . - . ID=Physo109429.1;Parent=Physo109429;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_105 . CDS 4661 5833 . - 0 ID=Physo109429;Parent=Physo109429;rank=1 scaffold_105 ensembl protein_coding_gene 41 674 . - . ID=Physo141892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050001;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 41 674 . - . ID=Physo141892;Parent=Physo141892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 41 674 . - . ID=Physo141892.1;Parent=Physo141892;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_105 . CDS 42 674 . - 0 ID=Physo141892;Parent=Physo141892;rank=1 scaffold_105 ensembl protein_coding_gene 8098 9444 . - . ID=Physo141894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050003;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 8098 9444 . - . ID=Physo141894;Parent=Physo141894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 8098 9011 . - 0 ID=Physo141894;Parent=Physo141894;rank=2 scaffold_105 . exon 8098 9011 . - . ID=Physo141894.2;Parent=Physo141894;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 9165 9444 . - 0 ID=Physo141894;Parent=Physo141894;rank=1 scaffold_105 . exon 9165 9444 . - . ID=Physo141894.1;Parent=Physo141894;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 ensembl protein_coding_gene 10023 11214 . - . ID=Physo141895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050004;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 10023 11214 . - . ID=Physo141895;Parent=Physo141895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 10023 10353 . - . ID=Physo141895.5;Parent=Physo141895;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_105 . CDS 10215 10353 . - 0 ID=Physo141895;Parent=Physo141895;rank=5 scaffold_105 . CDS 10440 10617 . - 0 ID=Physo141895;Parent=Physo141895;rank=4 scaffold_105 . exon 10440 10617 . - . ID=Physo141895.4;Parent=Physo141895;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_105 . CDS 10700 10771 . - 0 ID=Physo141895;Parent=Physo141895;rank=3 scaffold_105 . exon 10700 10771 . - . ID=Physo141895.3;Parent=Physo141895;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_105 . CDS 10861 10985 . - 0 ID=Physo141895;Parent=Physo141895;rank=2 scaffold_105 . exon 10861 10985 . - . ID=Physo141895.2;Parent=Physo141895;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_105 . CDS 11070 11194 . - 0 ID=Physo141895;Parent=Physo141895;rank=1 scaffold_105 . exon 11070 11214 . - . ID=Physo141895.1;Parent=Physo141895;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_105 ensembl protein_coding_gene 11801 12760 . - . ID=Physo141896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050005;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 11801 12760 . - . ID=Physo141896;Parent=Physo141896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 11801 12760 . - 0 ID=Physo141896;Parent=Physo141896;rank=1 scaffold_105 . exon 11801 12760 . - . ID=Physo141896.1;Parent=Physo141896;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 17976 20719 . - . ID=Physo141897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050006;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 17976 20719 . - . ID=Physo141897;Parent=Physo141897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 17976 18485 . - . ID=Physo141897.8;Parent=Physo141897;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_105 . CDS 18345 18485 . - 0 ID=Physo141897;Parent=Physo141897;rank=8 scaffold_105 . CDS 18545 18796 . - 0 ID=Physo141897;Parent=Physo141897;rank=7 scaffold_105 . exon 18545 18796 . - . ID=Physo141897.7;Parent=Physo141897;constitutive=1;rank=7 scaffold_105 . CDS 18888 19143 . - 0 ID=Physo141897;Parent=Physo141897;rank=6 scaffold_105 . exon 18888 19143 . - . ID=Physo141897.6;Parent=Physo141897;constitutive=1;ensembl_phase=2;rank=6 scaffold_105 . CDS 19211 19305 . - 0 ID=Physo141897;Parent=Physo141897;rank=5 scaffold_105 . exon 19211 19305 . - . ID=Physo141897.5;Parent=Physo141897;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_105 . CDS 19335 19736 . - 0 ID=Physo141897;Parent=Physo141897;rank=4 scaffold_105 . exon 19335 19736 . - . ID=Physo141897.4;Parent=Physo141897;constitutive=1;rank=4 scaffold_105 . CDS 19757 19910 . - 0 ID=Physo141897;Parent=Physo141897;rank=3 scaffold_105 . CDS 20051 20095 . - 0 ID=Physo141897;Parent=Physo141897;rank=2 scaffold_105 . CDS 20459 20583 . - 0 ID=Physo141897;Parent=Physo141897;rank=1 scaffold_105 . repeat_region 20135 20235 . ? . description=dust scaffold_105 . biological_region 20957 20959 0.999 + . logic_name=eponine scaffold_105 . biological_region 21125 21126 0.999 - . logic_name=eponine scaffold_105 . repeat_region 22783 22796 . ? . description=dust scaffold_105 . repeat_region 25220 25229 . ? . description=dust scaffold_105 . biological_region 26878 26887 0.999 - . logic_name=eponine scaffold_105 . repeat_region 26905 26913 . ? . description=dust scaffold_105 . biological_region 27695 27695 0.999 + . logic_name=eponine scaffold_105 . biological_region 28224 28227 0.999 + . logic_name=eponine scaffold_105 ensembl protein_coding_gene 27548 28740 . - . ID=Physo109430;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1050002;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 27548 28740 . - . ID=Physo109430;Parent=Physo109430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 27548 28740 . - . ID=Physo109430.1;Parent=Physo109430;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_105 . CDS 27598 28740 . - 0 ID=Physo109430;Parent=Physo109430;rank=1 scaffold_105 . exon 19757 19910 . - . ID=Physo141897.3;Parent=Physo141897;constitutive=1;ensembl_phase=2;rank=3 scaffold_105 . exon 20051 20095 . - . ID=Physo141897.2;Parent=Physo141897;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_105 . exon 20459 20719 . - . ID=Physo141897.1;Parent=Physo141897;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_105 ensembl protein_coding_gene 21029 22109 . + . ID=Physo141898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050007;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 21029 22109 . + . ID=Physo141898;Parent=Physo141898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 21029 21988 . + 0 ID=Physo141898;Parent=Physo141898;rank=1 scaffold_105 . exon 21029 22109 . + . ID=Physo141898.1;Parent=Physo141898;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_105 . repeat_region 31438 31462 . ? . description=trf scaffold_105 . repeat_region 32237 32271 . ? . description=trf scaffold_105 ensembl protein_coding_gene 33112 40178 . + . ID=Physo141900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050009;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 33112 40178 . + . ID=Physo141900;Parent=Physo141900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 33112 40178 . + . ID=Physo141900.1;Parent=Physo141900;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_105 . CDS 33343 40029 . + 0 ID=Physo141900;Parent=Physo141900;rank=1 scaffold_105 . biological_region 39197 39198 0.999 + . logic_name=eponine scaffold_105 . biological_region 39748 39751 0.999 - . logic_name=eponine scaffold_105 . biological_region 39870 39876 0.999 + . logic_name=eponine scaffold_105 . repeat_region 39878 39930 . ? . description=dust scaffold_105 . biological_region 39923 39933 0.999 - . logic_name=eponine scaffold_105 . biological_region 39930 39932 0.999 + . logic_name=eponine scaffold_105 . biological_region 39963 39974 0.999 - . logic_name=eponine scaffold_105 . biological_region 39979 39986 0.999 + . logic_name=eponine scaffold_105 . repeat_region 42108 42118 . ? . description=dust scaffold_105 . biological_region 42395 42401 0.999 + . logic_name=eponine scaffold_105 . biological_region 42800 42801 0.999 - . logic_name=eponine scaffold_105 . biological_region 42851 42855 0.999 - . logic_name=eponine scaffold_105 . biological_region 42912 42919 0.999 - . logic_name=eponine scaffold_105 . biological_region 45675 45677 0.999 + . logic_name=eponine scaffold_105 . biological_region 45825 45827 0.999 - . logic_name=eponine scaffold_105 . biological_region 46671 46674 0.999 + . logic_name=eponine scaffold_105 . biological_region 46810 46813 0.999 + . logic_name=eponine scaffold_105 . repeat_region 46868 46953 . ? . description=dust scaffold_105 . repeat_region 47000 47049 . ? . description=dust scaffold_105 . biological_region 47478 47483 0.999 - . logic_name=eponine scaffold_105 . biological_region 47756 47758 0.999 + . logic_name=eponine scaffold_105 . biological_region 47828 47833 0.999 - . logic_name=eponine scaffold_105 . biological_region 47952 47956 0.999 + . logic_name=eponine scaffold_105 . biological_region 47979 47985 0.999 + . logic_name=eponine scaffold_105 . biological_region 47988 47989 0.999 - . logic_name=eponine scaffold_105 . biological_region 48002 48005 0.999 - . logic_name=eponine scaffold_105 . biological_region 48029 48037 0.999 - . logic_name=eponine scaffold_105 . biological_region 48038 48044 0.999 + . logic_name=eponine scaffold_105 . biological_region 48056 48062 0.999 - . logic_name=eponine scaffold_105 . biological_region 48058 48058 0.999 + . logic_name=eponine scaffold_105 . biological_region 48079 48084 0.999 - . logic_name=eponine scaffold_105 . biological_region 48105 48113 0.999 - . logic_name=eponine scaffold_105 . biological_region 48135 48142 0.999 - . logic_name=eponine scaffold_105 ensembl protein_coding_gene 42833 43740 . + . ID=Physo122388;biotype=protein_coding;external_name=estExt_Genewise1.C_1050017;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 42833 43740 . + . ID=Physo122388;Parent=Physo122388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 42833 42851 . + . ID=Physo122388.1;Parent=Physo122388;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_105 . CDS 42844 42851 . + 0 ID=Physo122388;Parent=Physo122388;rank=1 scaffold_105 . CDS 42947 43101 . + 0 ID=Physo122388;Parent=Physo122388;rank=2 scaffold_105 . exon 42947 43101 . + . ID=Physo122388.2;Parent=Physo122388;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_105 . CDS 43207 43281 . + 0 ID=Physo122388;Parent=Physo122388;rank=3 scaffold_105 . exon 43207 43281 . + . ID=Physo122388.3;Parent=Physo122388;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_105 . CDS 43376 43473 . + 0 ID=Physo122388;Parent=Physo122388;rank=4 scaffold_105 . exon 43376 43740 . + . ID=Physo122388.4;Parent=Physo122388;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_105 ensembl protein_coding_gene 40771 42244 . - . ID=Physo141901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050010;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 40771 42244 . - . ID=Physo141901;Parent=Physo141901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 40771 41544 . - . ID=Physo141901.4;Parent=Physo141901;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_105 . CDS 40969 41544 . - 0 ID=Physo141901;Parent=Physo141901;rank=4 scaffold_105 . CDS 41625 41882 . - 0 ID=Physo141901;Parent=Physo141901;rank=3 scaffold_105 . exon 41625 41882 . - . ID=Physo141901.3;Parent=Physo141901;constitutive=1;rank=3 scaffold_105 . CDS 41961 42030 . - 0 ID=Physo141901;Parent=Physo141901;rank=2 scaffold_105 . exon 41961 42030 . - . ID=Physo141901.2;Parent=Physo141901;constitutive=1;ensembl_phase=2;rank=2 scaffold_105 . CDS 42135 42244 . - 0 ID=Physo141901;Parent=Physo141901;rank=1 scaffold_105 . exon 42135 42244 . - . ID=Physo141901.1;Parent=Physo141901;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_105 ensembl protein_coding_gene 43823 44337 . + . ID=Physo141902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050011;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 43823 44337 . + . ID=Physo141902;Parent=Physo141902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 43823 43942 . + . ID=Physo141902.1;Parent=Physo141902;constitutive=1;ensembl_phase=-1;rank=1 scaffold_105 . CDS 43835 43942 . + 0 ID=Physo141902;Parent=Physo141902;rank=1 scaffold_105 . CDS 44037 44237 . + 0 ID=Physo141902;Parent=Physo141902;rank=2 scaffold_105 . exon 44037 44337 . + . ID=Physo141902.2;Parent=Physo141902;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_105 ensembl protein_coding_gene 44890 48195 . - . ID=Physo141903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050012;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 44890 48195 . - . ID=Physo141903;Parent=Physo141903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 44890 45219 . - 0 ID=Physo141903;Parent=Physo141903;rank=3 scaffold_105 . exon 44890 45219 . - . ID=Physo141903.3;Parent=Physo141903;constitutive=1;rank=3 scaffold_105 . CDS 45485 46537 . - 0 ID=Physo141903;Parent=Physo141903;rank=2 scaffold_105 . exon 45485 46537 . - . ID=Physo141903.2;Parent=Physo141903;constitutive=1;rank=2 scaffold_105 . CDS 46609 48195 . - 0 ID=Physo141903;Parent=Physo141903;rank=1 scaffold_105 . exon 46609 48195 . - . ID=Physo141903.1;Parent=Physo141903;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 49951 51107 . - . ID=Physo141904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050013;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 49951 51107 . - . ID=Physo141904;Parent=Physo141904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 49951 50760 . - 0 ID=Physo141904;Parent=Physo141904;rank=2 scaffold_105 . exon 49951 50760 . - . ID=Physo141904.2;Parent=Physo141904;constitutive=1;rank=2 scaffold_105 . CDS 50829 51107 . - 0 ID=Physo141904;Parent=Physo141904;rank=1 scaffold_105 . exon 50829 51107 . - . ID=Physo141904.1;Parent=Physo141904;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 53060 54096 . + . ID=Physo141905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050014;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 53060 54096 . + . ID=Physo141905;Parent=Physo141905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 53060 54047 . + 0 ID=Physo141905;Parent=Physo141905;rank=1 scaffold_105 . exon 53060 54047 . + . ID=Physo141905.1;Parent=Physo141905;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . CDS 54089 54096 . + 0 ID=Physo141905;Parent=Physo141905;rank=2 scaffold_105 . exon 54089 54096 . + . ID=Physo141905.2;Parent=Physo141905;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 . biological_region 60253 60255 0.999 - . logic_name=eponine scaffold_105 . biological_region 61015 61017 0.999 - . logic_name=eponine scaffold_105 . repeat_region 61919 61976 . ? . description=trf scaffold_105 . biological_region 61933 61937 0.999 - . logic_name=eponine scaffold_105 . biological_region 62564 62569 0.999 + . logic_name=eponine scaffold_105 . biological_region 63655 63660 0.999 - . logic_name=eponine scaffold_105 . biological_region 63798 63802 0.999 - . logic_name=eponine scaffold_105 . repeat_region 64588 64595 . ? . description=dust scaffold_105 . repeat_region 65360 65843 . ? . description=trf scaffold_105 . repeat_region 65360 65851 . ? . description=trf scaffold_105 . repeat_region 65406 65516 . ? . description=trf scaffold_105 . repeat_region 65460 65851 . ? . description=trf scaffold_105 . repeat_region 67258 67285 . ? . description=trf scaffold_105 ensembl protein_coding_gene 59703 60710 . - . ID=Physo109431;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1050003;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 59703 60710 . - . ID=Physo109431;Parent=Physo109431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 59703 60662 . - 0 ID=Physo109431;Parent=Physo109431;rank=2 scaffold_105 . exon 59703 60662 . - . ID=Physo109431.2;Parent=Physo109431;constitutive=1;rank=2 scaffold_105 . CDS 60687 60710 . - 0 ID=Physo109431;Parent=Physo109431;rank=1 scaffold_105 . exon 60687 60710 . - . ID=Physo109431.1;Parent=Physo109431;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 60939 62167 . + . ID=Physo141907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050016;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 60939 62167 . + . ID=Physo141907;Parent=Physo141907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 60939 61016 . + 0 ID=Physo141907;Parent=Physo141907;rank=1 scaffold_105 . exon 60939 61016 . + . ID=Physo141907.1;Parent=Physo141907;constitutive=1;rank=1 scaffold_105 . CDS 61087 61506 . + 0 ID=Physo141907;Parent=Physo141907;rank=2 scaffold_105 . exon 61087 61506 . + . ID=Physo141907.2;Parent=Physo141907;constitutive=1;rank=2 scaffold_105 . CDS 61543 61701 . + 0 ID=Physo141907;Parent=Physo141907;rank=3 scaffold_105 . exon 61543 61701 . + . ID=Physo141907.3;Parent=Physo141907;constitutive=1;rank=3 scaffold_105 . CDS 61841 62167 . + 0 ID=Physo141907;Parent=Physo141907;rank=4 scaffold_105 . exon 61841 62167 . + . ID=Physo141907.4;Parent=Physo141907;constitutive=1;rank=4 scaffold_105 ensembl protein_coding_gene 63049 64303 . + . ID=Physo141908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050017;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 63049 64303 . + . ID=Physo141908;Parent=Physo141908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 63049 63051 . + 0 ID=Physo141908;Parent=Physo141908;rank=1 scaffold_105 . exon 63049 63051 . + . ID=Physo141908.1;Parent=Physo141908;constitutive=1;rank=1 scaffold_105 . CDS 63134 64303 . + 0 ID=Physo141908;Parent=Physo141908;rank=2 scaffold_105 . exon 63134 64303 . + . ID=Physo141908.2;Parent=Physo141908;constitutive=1;rank=2 scaffold_105 ensembl pseudogene 65476 66849 . - . ID=Physo141909;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_1050018;logic_name=jgi_physo1_1 scaffold_105 ensembl pseudogene 65476 66849 . - . ID=Physo141909;Parent=Physo141909;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_105 . exon 65476 65556 . - . ID=Physo141909.3;Parent=Physo141909;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_105 . exon 65621 65632 . - . ID=Physo141909.2;Parent=Physo141909;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_105 . exon 65696 66849 . - . ID=Physo141909.1;Parent=Physo141909;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_105 ensembl protein_coding_gene 74663 78148 . - . ID=Physo141910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050019;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 74663 78148 . - . ID=Physo141910;Parent=Physo141910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 74663 78148 . - 0 ID=Physo141910;Parent=Physo141910;rank=1 scaffold_105 . exon 74663 78148 . - . ID=Physo141910.1;Parent=Physo141910;constitutive=1;rank=1 scaffold_105 . biological_region 78445 78446 0.999 - . logic_name=eponine scaffold_105 . biological_region 78458 78463 0.999 - . logic_name=eponine scaffold_105 . biological_region 78477 78478 0.999 - . logic_name=eponine scaffold_105 . repeat_region 79811 79818 . ? . description=dust scaffold_105 . biological_region 80190 80191 0.999 + . logic_name=eponine scaffold_105 . biological_region 82775 82778 0.999 - . logic_name=eponine scaffold_105 . biological_region 82791 82791 0.999 + . logic_name=eponine scaffold_105 . biological_region 83624 83626 0.999 + . logic_name=eponine scaffold_105 . repeat_region 84550 84558 . ? . description=dust scaffold_105 . repeat_region 87169 87177 . ? . description=dust scaffold_105 . repeat_region 87294 87315 . ? . description=dust scaffold_105 ensembl protein_coding_gene 82893 84175 . + . ID=Physo109432;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1050004;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 82893 84175 . + . ID=Physo109432;Parent=Physo109432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 82893 84175 . + . ID=Physo109432.1;Parent=Physo109432;constitutive=1;ensembl_phase=-1;rank=1 scaffold_105 . CDS 83015 84175 . + 0 ID=Physo109432;Parent=Physo109432;rank=1 scaffold_105 . repeat_region 91600 91635 . ? . description=trf scaffold_105 . repeat_region 91600 91635 . ? . description=trf scaffold_105 ensembl protein_coding_gene 89246 91886 . - . ID=Physo141912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050021;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 89246 91886 . - . ID=Physo141912;Parent=Physo141912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 89246 89951 . - 0 ID=Physo141912;Parent=Physo141912;rank=3 scaffold_105 . exon 89246 89951 . - . ID=Physo141912.3;Parent=Physo141912;constitutive=1;ensembl_phase=2;rank=3 scaffold_105 . CDS 90019 91633 . - 0 ID=Physo141912;Parent=Physo141912;rank=2 scaffold_105 . exon 90019 91633 . - . ID=Physo141912.2;Parent=Physo141912;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_105 . CDS 91859 91886 . - 0 ID=Physo141912;Parent=Physo141912;rank=1 scaffold_105 . exon 91859 91886 . - . ID=Physo141912.1;Parent=Physo141912;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 ensembl protein_coding_gene 92474 92941 . + . ID=Physo141913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050022;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 92474 92941 . + . ID=Physo141913;Parent=Physo141913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 92474 92941 . + 0 ID=Physo141913;Parent=Physo141913;rank=1 scaffold_105 . exon 92474 92941 . + . ID=Physo141913.1;Parent=Physo141913;constitutive=1;rank=1 scaffold_105 . biological_region 99037 99038 0.999 + . logic_name=eponine scaffold_105 . repeat_region 100968 100976 . ? . description=dust scaffold_105 . repeat_region 106384 106393 . ? . description=dust scaffold_105 ensembl protein_coding_gene 107365 111194 . + . ID=Physo141914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050023;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 107365 111194 . + . ID=Physo141914;Parent=Physo141914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 107365 107372 . + 0 ID=Physo141914;Parent=Physo141914;rank=1 scaffold_105 . exon 107365 107372 . + . ID=Physo141914.1;Parent=Physo141914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_105 . CDS 107745 108855 . + 0 ID=Physo141914;Parent=Physo141914;rank=2 scaffold_105 . CDS 108917 109921 . + 0 ID=Physo141914;Parent=Physo141914;rank=3 scaffold_105 . CDS 110342 110880 . + 0 ID=Physo141914;Parent=Physo141914;rank=4 scaffold_105 . CDS 111122 111194 . + 0 ID=Physo141914;Parent=Physo141914;rank=5 scaffold_105 . repeat_region 107817 107852 . ? . description=trf scaffold_105 . repeat_region 107817 107852 . ? . description=trf scaffold_105 . repeat_region 109918 110102 . - . description=Polinton-1_PI scaffold_105 . repeat_region 110118 110188 . - . description=Polinton-1_PI scaffold_105 . repeat_region 110237 110527 . + . description=Polinton-1_PI scaffold_105 . repeat_region 110681 110726 . + . description=Polinton-1_PI scaffold_105 . repeat_region 111818 112331 . + . description=Polinton-1_PI scaffold_105 . repeat_region 113099 113391 . + . description=Polinton-1_PI scaffold_105 . repeat_region 113397 121614 . + . description=Polinton-1_PI scaffold_105 . exon 107745 108855 . + . ID=Physo141914.2;Parent=Physo141914;constitutive=1;ensembl_phase=2;rank=2 scaffold_105 . exon 108917 109921 . + . ID=Physo141914.3;Parent=Physo141914;constitutive=1;rank=3 scaffold_105 . exon 110342 110880 . + . ID=Physo141914.4;Parent=Physo141914;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_105 . exon 111122 111194 . + . ID=Physo141914.5;Parent=Physo141914;constitutive=1;ensembl_phase=2;rank=5 scaffold_105 ensembl protein_coding_gene 113208 115996 . + . ID=Physo141915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050024;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 113208 115996 . + . ID=Physo141915;Parent=Physo141915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 113208 114594 . + 0 ID=Physo141915;Parent=Physo141915;rank=1 scaffold_105 . exon 113208 114594 . + . ID=Physo141915.1;Parent=Physo141915;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . CDS 114772 114980 . + 0 ID=Physo141915;Parent=Physo141915;rank=2 scaffold_105 . exon 114772 114980 . + . ID=Physo141915.2;Parent=Physo141915;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 115057 115127 . + 0 ID=Physo141915;Parent=Physo141915;rank=3 scaffold_105 . exon 115057 115127 . + . ID=Physo141915.3;Parent=Physo141915;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_105 . CDS 115230 115313 . + 0 ID=Physo141915;Parent=Physo141915;rank=4 scaffold_105 . exon 115230 115313 . + . ID=Physo141915.4;Parent=Physo141915;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_105 . CDS 115335 115956 . + 0 ID=Physo141915;Parent=Physo141915;rank=5 scaffold_105 . exon 115335 115956 . + . ID=Physo141915.5;Parent=Physo141915;constitutive=1;ensembl_phase=2;rank=5 scaffold_105 . CDS 115985 115996 . + 0 ID=Physo141915;Parent=Physo141915;rank=6 scaffold_105 . exon 115985 115996 . + . ID=Physo141915.6;Parent=Physo141915;constitutive=1;rank=6 scaffold_105 . repeat_region 118738 118774 . ? . description=dust scaffold_105 . repeat_region 119354 119364 . ? . description=dust scaffold_105 . repeat_region 121333 121341 . ? . description=dust scaffold_105 . repeat_region 125977 125984 . ? . description=dust scaffold_105 . repeat_region 125999 126006 . ? . description=dust scaffold_105 . repeat_region 126674 127609 . + . description=Polinton-1_PI scaffold_105 . repeat_region 127755 127885 . + . description=Polinton-1_PI scaffold_105 . repeat_region 127904 127972 . + . description=Polinton-1_PI scaffold_105 . repeat_region 127995 128172 . + . description=Polinton-1_PI scaffold_105 . repeat_region 128981 129111 . - . description=Gypsy-2-LTR_PI scaffold_105 . biological_region 129520 129522 0.999 - . logic_name=eponine scaffold_105 . biological_region 129576 129579 0.999 + . logic_name=eponine scaffold_105 . repeat_region 130914 135866 . - . description=Gypsy-2-I_PI-int scaffold_105 . repeat_region 135882 136012 . - . description=Gypsy-2-LTR_PI scaffold_105 . repeat_region 136424 136468 . ? . description=trf scaffold_105 ensembl protein_coding_gene 129416 130900 . + . ID=Physo141916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050025;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 129416 130900 . + . ID=Physo141916;Parent=Physo141916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 129416 129800 . + 0 ID=Physo141916;Parent=Physo141916;rank=1 scaffold_105 . exon 129416 129800 . + . ID=Physo141916.1;Parent=Physo141916;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . CDS 130191 130900 . + 0 ID=Physo141916;Parent=Physo141916;rank=2 scaffold_105 . exon 130191 130900 . + . ID=Physo141916.2;Parent=Physo141916;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 ensembl protein_coding_gene 132134 133069 . - . ID=Physo141917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050026;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 132134 133069 . - . ID=Physo141917;Parent=Physo141917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 132134 133069 . - 0 ID=Physo141917;Parent=Physo141917;rank=1 scaffold_105 . exon 132134 133069 . - . ID=Physo141917.1;Parent=Physo141917;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 133498 135822 . - . ID=Physo141918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050027;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 133498 135822 . - . ID=Physo141918;Parent=Physo141918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 133498 134388 . - 0 ID=Physo141918;Parent=Physo141918;rank=4 scaffold_105 . exon 133498 134388 . - . ID=Physo141918.4;Parent=Physo141918;constitutive=1;rank=4 scaffold_105 . CDS 134488 134857 . - 0 ID=Physo141918;Parent=Physo141918;rank=3 scaffold_105 . exon 134488 134857 . - . ID=Physo141918.3;Parent=Physo141918;constitutive=1;ensembl_phase=2;rank=3 scaffold_105 . CDS 135011 135403 . - 0 ID=Physo141918;Parent=Physo141918;rank=2 scaffold_105 . exon 135011 135403 . - . ID=Physo141918.2;Parent=Physo141918;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_105 . CDS 135437 135822 . - 0 ID=Physo141918;Parent=Physo141918;rank=1 scaffold_105 . exon 135437 135822 . - . ID=Physo141918.1;Parent=Physo141918;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_105 ensembl protein_coding_gene 136197 137078 . + . ID=Physo141919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050028;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 136197 137078 . + . ID=Physo141919;Parent=Physo141919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 136197 136203 . + 0 ID=Physo141919;Parent=Physo141919;rank=1 scaffold_105 . exon 136197 136203 . + . ID=Physo141919.1;Parent=Physo141919;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . CDS 136264 136503 . + 0 ID=Physo141919;Parent=Physo141919;rank=2 scaffold_105 . exon 136264 136503 . + . ID=Physo141919.2;Parent=Physo141919;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 136723 137078 . + 0 ID=Physo141919;Parent=Physo141919;rank=3 scaffold_105 . exon 136723 137078 . + . ID=Physo141919.3;Parent=Physo141919;constitutive=1;ensembl_phase=1;rank=3 scaffold_105 . repeat_region 139866 139879 . ? . description=dust scaffold_105 ensembl protein_coding_gene 145219 148317 . - . ID=Physo141920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050029;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 145219 148317 . - . ID=Physo141920;Parent=Physo141920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 145219 148317 . - 0 ID=Physo141920;Parent=Physo141920;rank=1 scaffold_105 . exon 145219 148317 . - . ID=Physo141920.1;Parent=Physo141920;constitutive=1;rank=1 scaffold_105 . biological_region 147953 147958 0.999 + . logic_name=eponine scaffold_105 . biological_region 148085 148086 0.999 - . logic_name=eponine scaffold_105 . biological_region 148089 148095 0.999 + . logic_name=eponine scaffold_105 . biological_region 148142 148147 0.999 + . logic_name=eponine scaffold_105 . biological_region 148162 148172 0.999 - . logic_name=eponine scaffold_105 . biological_region 151112 151113 0.999 + . logic_name=eponine scaffold_105 . biological_region 151152 151157 0.999 - . logic_name=eponine scaffold_105 . biological_region 153554 153555 0.999 + . logic_name=eponine scaffold_105 . repeat_region 153776 153796 . ? . description=trf scaffold_105 . biological_region 153916 153922 0.999 + . logic_name=eponine scaffold_105 . biological_region 153936 153936 0.999 - . logic_name=eponine scaffold_105 . biological_region 153984 153985 0.999 - . logic_name=eponine scaffold_105 . biological_region 154752 154755 0.999 + . logic_name=eponine scaffold_105 ensembl protein_coding_gene 149756 151328 . + . ID=Physo141921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050030;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 149756 151328 . + . ID=Physo141921;Parent=Physo141921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 149756 151019 . + 0 ID=Physo141921;Parent=Physo141921;rank=1 scaffold_105 . exon 149756 151019 . + . ID=Physo141921.1;Parent=Physo141921;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . CDS 151210 151328 . + 0 ID=Physo141921;Parent=Physo141921;rank=2 scaffold_105 . exon 151210 151328 . + . ID=Physo141921.2;Parent=Physo141921;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 ensembl protein_coding_gene 151829 152425 . + . ID=Physo141922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050031;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 151829 152425 . + . ID=Physo141922;Parent=Physo141922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 151829 151943 . + 0 ID=Physo141922;Parent=Physo141922;rank=1 scaffold_105 . exon 151829 151943 . + . ID=Physo141922.1;Parent=Physo141922;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 . CDS 152011 152237 . + 0 ID=Physo141922;Parent=Physo141922;rank=2 scaffold_105 . exon 152011 152237 . + . ID=Physo141922.2;Parent=Physo141922;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 152342 152425 . + 0 ID=Physo141922;Parent=Physo141922;rank=3 scaffold_105 . exon 152342 152425 . + . ID=Physo141922.3;Parent=Physo141922;constitutive=1;rank=3 scaffold_105 ensembl protein_coding_gene 152803 153858 . - . ID=Physo141923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050032;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 152803 153858 . - . ID=Physo141923;Parent=Physo141923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 152803 153858 . - 0 ID=Physo141923;Parent=Physo141923;rank=1 scaffold_105 . exon 152803 153858 . - . ID=Physo141923.1;Parent=Physo141923;constitutive=1;rank=1 scaffold_105 . repeat_region 168816 168876 . ? . description=dust scaffold_105 . repeat_region 169073 169081 . ? . description=dust scaffold_105 . biological_region 169348 169350 0.999 - . logic_name=eponine scaffold_105 . biological_region 169608 169612 0.999 - . logic_name=eponine scaffold_105 . biological_region 170508 170510 0.999 - . logic_name=eponine scaffold_105 ensembl protein_coding_gene 167342 168248 . - . ID=Physo141924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050033;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 167342 168248 . - . ID=Physo141924;Parent=Physo141924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 167342 167799 . - 0 ID=Physo141924;Parent=Physo141924;rank=2 scaffold_105 . exon 167342 167799 . - . ID=Physo141924.2;Parent=Physo141924;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 167882 168248 . - 0 ID=Physo141924;Parent=Physo141924;rank=1 scaffold_105 . exon 167882 168248 . - . ID=Physo141924.1;Parent=Physo141924;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 ensembl protein_coding_gene 169168 172561 . + . ID=Physo141925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050034;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 169168 172561 . + . ID=Physo141925;Parent=Physo141925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 169168 172398 . + 0 ID=Physo141925;Parent=Physo141925;rank=1 scaffold_105 . exon 169168 172561 . + . ID=Physo141925.1;Parent=Physo141925;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_105 ensembl protein_coding_gene 172914 174433 . - . ID=Physo141926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050035;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 172914 174433 . - . ID=Physo141926;Parent=Physo141926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 172914 173351 . - 0 ID=Physo141926;Parent=Physo141926;rank=2 scaffold_105 . exon 172914 173351 . - . ID=Physo141926.2;Parent=Physo141926;constitutive=1;rank=2 scaffold_105 . CDS 173423 174433 . - 0 ID=Physo141926;Parent=Physo141926;rank=1 scaffold_105 . exon 173423 174433 . - . ID=Physo141926.1;Parent=Physo141926;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 174860 177352 . + . ID=Physo141927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050036;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 174860 177352 . + . ID=Physo141927;Parent=Physo141927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 174860 177352 . + 0 ID=Physo141927;Parent=Physo141927;rank=1 scaffold_105 . exon 174860 177352 . + . ID=Physo141927.1;Parent=Physo141927;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 181985 184019 . - . ID=Physo141928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050037;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 181985 184019 . - . ID=Physo141928;Parent=Physo141928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 181985 182102 . - 0 ID=Physo141928;Parent=Physo141928;rank=3 scaffold_105 . exon 181985 182102 . - . ID=Physo141928.3;Parent=Physo141928;constitutive=1;ensembl_phase=2;rank=3 scaffold_105 . CDS 182173 182300 . - 0 ID=Physo141928;Parent=Physo141928;rank=2 scaffold_105 . exon 182173 182300 . - . ID=Physo141928.2;Parent=Physo141928;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_105 . CDS 182376 184019 . - 0 ID=Physo141928;Parent=Physo141928;rank=1 scaffold_105 . exon 182376 184019 . - . ID=Physo141928.1;Parent=Physo141928;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 185252 186113 . + . ID=Physo141929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050038;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 185252 186113 . + . ID=Physo141929;Parent=Physo141929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 185252 185305 . + 0 ID=Physo141929;Parent=Physo141929;rank=1 scaffold_105 . exon 185252 185305 . + . ID=Physo141929.1;Parent=Physo141929;constitutive=1;rank=1 scaffold_105 . CDS 185368 185778 . + 0 ID=Physo141929;Parent=Physo141929;rank=2 scaffold_105 . exon 185368 185778 . + . ID=Physo141929.2;Parent=Physo141929;constitutive=1;rank=2 scaffold_105 . CDS 185799 186113 . + 0 ID=Physo141929;Parent=Physo141929;rank=3 scaffold_105 . biological_region 185954 185955 0.999 - . logic_name=eponine scaffold_105 . repeat_region 194285 194292 . ? . description=dust scaffold_105 . exon 185799 186113 . + . ID=Physo141929.3;Parent=Physo141929;constitutive=1;rank=3 scaffold_105 ensembl protein_coding_gene 192411 194028 . - . ID=Physo141930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050039;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 192411 194028 . - . ID=Physo141930;Parent=Physo141930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 192411 193628 . - 0 ID=Physo141930;Parent=Physo141930;rank=2 scaffold_105 . exon 192411 193628 . - . ID=Physo141930.2;Parent=Physo141930;constitutive=1;rank=2 scaffold_105 . CDS 193690 194028 . - 0 ID=Physo141930;Parent=Physo141930;rank=1 scaffold_105 . exon 193690 194028 . - . ID=Physo141930.1;Parent=Physo141930;constitutive=1;rank=1 scaffold_105 . repeat_region 200925 200970 . ? . description=trf scaffold_105 ensembl protein_coding_gene 201800 202890 . - . ID=Physo122406;biotype=protein_coding;external_name=estExt_Genewise1.C_1050035;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 201800 202890 . - . ID=Physo122406;Parent=Physo122406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 201800 202390 . - 0 ID=Physo122406;Parent=Physo122406;rank=1 scaffold_105 . exon 201800 202890 . - . ID=Physo122406.1;Parent=Physo122406;constitutive=1;ensembl_phase=-1;rank=1 scaffold_105 ensembl protein_coding_gene 203753 208243 . - . ID=Physo141931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050040;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 203753 208243 . - . ID=Physo141931;Parent=Physo141931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 203753 204555 . - 0 ID=Physo141931;Parent=Physo141931;rank=6 scaffold_105 . exon 203753 204555 . - . ID=Physo141931.6;Parent=Physo141931;constitutive=1;ensembl_phase=1;rank=6 scaffold_105 . CDS 204778 205572 . - 0 ID=Physo141931;Parent=Physo141931;rank=5 scaffold_105 . exon 204778 205572 . - . ID=Physo141931.5;Parent=Physo141931;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_105 . CDS 205612 205983 . - 0 ID=Physo141931;Parent=Physo141931;rank=4 scaffold_105 . CDS 206044 206242 . - 0 ID=Physo141931;Parent=Physo141931;rank=3 scaffold_105 . CDS 206567 208132 . - 0 ID=Physo141931;Parent=Physo141931;rank=2 scaffold_105 . CDS 208187 208243 . - 0 ID=Physo141931;Parent=Physo141931;rank=1 scaffold_105 . repeat_region 209426 210011 . ? . description=dust scaffold_105 . repeat_region 213300 213308 . ? . description=dust scaffold_105 ensembl protein_coding_gene 213339 213398 . - . ID=Physo122407;biotype=protein_coding;external_name=estExt_Genewise1.C_1050036;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 213339 213398 . - . ID=Physo122407;Parent=Physo122407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 213339 213398 . - 0 ID=Physo122407;Parent=Physo122407;rank=1 scaffold_105 . exon 213339 213398 . - . ID=Physo122407.1;Parent=Physo122407;constitutive=1;rank=1 scaffold_105 . exon 205612 205983 . - . ID=Physo141931.4;Parent=Physo141931;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_105 . exon 206044 206242 . - . ID=Physo141931.3;Parent=Physo141931;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_105 . exon 206567 208132 . - . ID=Physo141931.2;Parent=Physo141931;constitutive=1;rank=2 scaffold_105 . exon 208187 208243 . - . ID=Physo141931.1;Parent=Physo141931;constitutive=1;rank=1 scaffold_105 . repeat_region 213352 215348 . ? . description=trf scaffold_105 . repeat_region 215356 217341 . ? . description=trf scaffold_105 . repeat_region 217842 217881 . ? . description=trf scaffold_105 . biological_region 218652 218656 0.999 + . logic_name=eponine scaffold_105 . biological_region 218995 218998 0.999 + . logic_name=eponine scaffold_105 . biological_region 219221 219222 0.999 - . logic_name=eponine scaffold_105 . biological_region 219258 219263 0.999 + . logic_name=eponine scaffold_105 ensembl protein_coding_gene 217241 217294 . + . ID=Physo122408;biotype=protein_coding;external_name=estExt_Genewise1.C_1050037;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 217241 217294 . + . ID=Physo122408;Parent=Physo122408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 217241 217294 . + 0 ID=Physo122408;Parent=Physo122408;rank=1 scaffold_105 . exon 217241 217294 . + . ID=Physo122408.1;Parent=Physo122408;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 223632 223835 . - . ID=Physo122409;biotype=protein_coding;external_name=estExt_Genewise1.C_1050038;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 223632 223835 . - . ID=Physo122409;Parent=Physo122409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . exon 223632 223835 . - . ID=Physo122409.1;Parent=Physo122409;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_105 . CDS 223701 223793 . - 0 ID=Physo122409;Parent=Physo122409;rank=1 scaffold_105 . repeat_region 226981 226989 . ? . description=dust scaffold_105 . repeat_region 228262 228276 . ? . description=dust scaffold_105 . repeat_region 228279 228328 . ? . description=dust scaffold_105 . repeat_region 230929 231814 . ? . description=dust scaffold_105 . repeat_region 233028 233077 . ? . description=dust scaffold_105 ensembl protein_coding_gene 227820 229903 . - . ID=Physo141932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050041;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 227820 229903 . - . ID=Physo141932;Parent=Physo141932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 227820 228039 . - 0 ID=Physo141932;Parent=Physo141932;rank=4 scaffold_105 . exon 227820 228039 . - . ID=Physo141932.4;Parent=Physo141932;constitutive=1;ensembl_phase=2;rank=4 scaffold_105 . CDS 228431 228831 . - 0 ID=Physo141932;Parent=Physo141932;rank=3 scaffold_105 . exon 228431 228831 . - . ID=Physo141932.3;Parent=Physo141932;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_105 . CDS 229154 229539 . - 0 ID=Physo141932;Parent=Physo141932;rank=2 scaffold_105 . exon 229154 229539 . - . ID=Physo141932.2;Parent=Physo141932;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 229861 229903 . - 0 ID=Physo141932;Parent=Physo141932;rank=1 scaffold_105 . exon 229861 229903 . - . ID=Physo141932.1;Parent=Physo141932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_105 ensembl protein_coding_gene 233355 234869 . - . ID=Physo141933;biotype=protein_coding;description=Avh163PsAvh163 [Source:UniProtKB/TrEMBL%3BAcc:B2C6F3];external_name=estExt_fgenesh1_pg.C_1050042;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 233355 234869 . - . ID=Physo141933;Parent=Physo141933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 233355 234869 . - 0 ID=Physo141933;Parent=Physo141933;rank=1 scaffold_105 . exon 233355 234869 . - . ID=Physo141933.1;Parent=Physo141933;constitutive=1;rank=1 scaffold_105 . repeat_region 234961 235111 . ? . description=trf scaffold_105 . repeat_region 235567 235750 . ? . description=trf scaffold_105 . repeat_region 236342 236386 . ? . description=trf scaffold_105 . repeat_region 236546 236822 . ? . description=trf scaffold_105 . repeat_region 236566 236655 . ? . description=trf scaffold_105 ensembl protein_coding_gene 237934 239427 . + . ID=Physo141934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050043;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 237934 239427 . + . ID=Physo141934;Parent=Physo141934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 237934 239427 . + 0 ID=Physo141934;Parent=Physo141934;rank=1 scaffold_105 . exon 237934 239427 . + . ID=Physo141934.1;Parent=Physo141934;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 241743 244757 . - . ID=Physo141935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050044;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 241743 244757 . - . ID=Physo141935;Parent=Physo141935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 241743 244757 . - 0 ID=Physo141935;Parent=Physo141935;rank=1 scaffold_105 . exon 241743 244757 . - . ID=Physo141935.1;Parent=Physo141935;constitutive=1;rank=1 scaffold_105 . biological_region 244427 244428 0.999 + . logic_name=eponine scaffold_105 . biological_region 244494 244499 0.999 + . logic_name=eponine scaffold_105 . biological_region 244554 244561 0.999 - . logic_name=eponine scaffold_105 . biological_region 244576 244581 0.999 + . logic_name=eponine scaffold_105 . biological_region 244592 244595 0.999 - . logic_name=eponine scaffold_105 . biological_region 245672 245677 0.999 - . logic_name=eponine scaffold_105 . repeat_region 248557 248580 . ? . description=dust scaffold_105 . repeat_region 249434 249441 . ? . description=dust scaffold_105 . repeat_region 253073 253081 . ? . description=dust scaffold_105 . biological_region 253623 253624 0.999 - . logic_name=eponine scaffold_105 ensembl protein_coding_gene 244952 246372 . + . ID=Physo141936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050045;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 244952 246372 . + . ID=Physo141936;Parent=Physo141936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 244952 245055 . + 0 ID=Physo141936;Parent=Physo141936;rank=1 scaffold_105 . exon 244952 245055 . + . ID=Physo141936.1;Parent=Physo141936;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_105 . CDS 245164 245264 . + 0 ID=Physo141936;Parent=Physo141936;rank=2 scaffold_105 . exon 245164 245264 . + . ID=Physo141936.2;Parent=Physo141936;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_105 . CDS 245344 245517 . + 0 ID=Physo141936;Parent=Physo141936;rank=3 scaffold_105 . exon 245344 245517 . + . ID=Physo141936.3;Parent=Physo141936;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_105 . CDS 245586 245668 . + 0 ID=Physo141936;Parent=Physo141936;rank=4 scaffold_105 . exon 245586 245668 . + . ID=Physo141936.4;Parent=Physo141936;constitutive=1;ensembl_phase=1;rank=4 scaffold_105 . CDS 245764 246372 . + 0 ID=Physo141936;Parent=Physo141936;rank=5 scaffold_105 . exon 245764 246372 . + . ID=Physo141936.5;Parent=Physo141936;constitutive=1;rank=5 scaffold_105 ensembl protein_coding_gene 246881 248068 . + . ID=Physo141937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050046;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 246881 248068 . + . ID=Physo141937;Parent=Physo141937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 246881 248068 . + 0 ID=Physo141937;Parent=Physo141937;rank=1 scaffold_105 . exon 246881 248068 . + . ID=Physo141937.1;Parent=Physo141937;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 248551 249314 . - . ID=Physo141938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050047;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 248551 249314 . - . ID=Physo141938;Parent=Physo141938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 248551 248610 . - 0 ID=Physo141938;Parent=Physo141938;rank=5 scaffold_105 . exon 248551 248610 . - . ID=Physo141938.5;Parent=Physo141938;constitutive=1;rank=5 scaffold_105 . CDS 248685 248851 . - 0 ID=Physo141938;Parent=Physo141938;rank=4 scaffold_105 . exon 248685 248851 . - . ID=Physo141938.4;Parent=Physo141938;constitutive=1;ensembl_phase=1;rank=4 scaffold_105 . CDS 248929 248993 . - 0 ID=Physo141938;Parent=Physo141938;rank=3 scaffold_105 . exon 248929 248993 . - . ID=Physo141938.3;Parent=Physo141938;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_105 . CDS 249070 249134 . - 0 ID=Physo141938;Parent=Physo141938;rank=2 scaffold_105 . exon 249070 249134 . - . ID=Physo141938.2;Parent=Physo141938;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_105 . CDS 249309 249314 . - 0 ID=Physo141938;Parent=Physo141938;rank=1 scaffold_105 . exon 249309 249314 . - . ID=Physo141938.1;Parent=Physo141938;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 259045 259815 . + . ID=Physo141939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050048;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 259045 259815 . + . ID=Physo141939;Parent=Physo141939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 259045 259815 . + 0 ID=Physo141939;Parent=Physo141939;rank=1 scaffold_105 . exon 259045 259815 . + . ID=Physo141939.1;Parent=Physo141939;constitutive=1;rank=1 scaffold_105 ensembl protein_coding_gene 263764 264192 . + . ID=Physo141940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050049;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 263764 264192 . + . ID=Physo141940;Parent=Physo141940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 263764 264192 . + 0 ID=Physo141940;Parent=Physo141940;rank=1 scaffold_105 . exon 263764 264192 . + . ID=Physo141940.1;Parent=Physo141940;constitutive=1;rank=1 scaffold_105 . repeat_region 264273 264280 . ? . description=dust scaffold_105 . repeat_region 265839 265846 . ? . description=dust scaffold_105 . repeat_region 269833 269879 . ? . description=trf scaffold_105 . repeat_region 273085 273131 . ? . description=trf scaffold_105 ensembl protein_coding_gene 275501 277498 . - . ID=Physo141941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1050050;logic_name=jgi_physo1_1 scaffold_105 ensembl transcript 275501 277498 . - . ID=Physo141941;Parent=Physo141941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_105 . CDS 275501 276274 . - 0 ID=Physo141941;Parent=Physo141941;rank=4 scaffold_105 . exon 275501 276274 . - . ID=Physo141941.4;Parent=Physo141941;constitutive=1;rank=4 scaffold_105 . CDS 276320 276388 . - 0 ID=Physo141941;Parent=Physo141941;rank=3 scaffold_105 . exon 276320 276388 . - . ID=Physo141941.3;Parent=Physo141941;constitutive=1;rank=3 scaffold_105 . CDS 276507 277204 . - 0 ID=Physo141941;Parent=Physo141941;rank=2 scaffold_105 . exon 276507 277204 . - . ID=Physo141941.2;Parent=Physo141941;constitutive=1;ensembl_phase=1;rank=2 scaffold_105 . CDS 277453 277498 . - 0 ID=Physo141941;Parent=Physo141941;rank=1 scaffold_105 . exon 277453 277498 . - . ID=Physo141941.1;Parent=Physo141941;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_103 1 299156 scaffold_103 . biological_region 203 204 0.999 - . logic_name=eponine scaffold_103 . repeat_region 692 1138 . - . description=Gypsy-1-I_PI-int scaffold_103 . repeat_region 1155 1708 . - . description=Gypsy-1-I_PI-int scaffold_103 . repeat_region 1838 2518 . - . description=Gypsy-1-I_PI-int scaffold_103 . repeat_region 2540 2820 . + . description=Gypsy-1-I_PI-int scaffold_103 . repeat_region 3057 12371 . ? . description=dust scaffold_103 . repeat_region 17449 17582 . ? . description=trf scaffold_103 . repeat_region 19194 19221 . ? . description=trf scaffold_103 ensembl protein_coding_gene 15312 16112 . - . ID=Physo109422;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1030001;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 15312 16112 . - . ID=Physo109422;Parent=Physo109422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 15312 16112 . - 0 ID=Physo109422;Parent=Physo109422;rank=1 scaffold_103 . exon 15312 16112 . - . ID=Physo109422.1;Parent=Physo109422;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 14571 15077 . - . ID=Physo122283;biotype=protein_coding;external_name=estExt_Genewise1.C_1030016;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 14571 15077 . - . ID=Physo122283;Parent=Physo122283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . exon 14571 15077 . - . ID=Physo122283.1;Parent=Physo122283;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_103 . CDS 14740 15021 . - 0 ID=Physo122283;Parent=Physo122283;rank=1 scaffold_103 ensembl protein_coding_gene 13925 14470 . + . ID=Physo141746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030001;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 13925 14470 . + . ID=Physo141746;Parent=Physo141746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 13925 14470 . + 0 ID=Physo141746;Parent=Physo141746;rank=1 scaffold_103 . exon 13925 14470 . + . ID=Physo141746.1;Parent=Physo141746;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 16257 17279 . - . ID=Physo141748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030003;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 16257 17279 . - . ID=Physo141748;Parent=Physo141748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 16257 16600 . - 0 ID=Physo141748;Parent=Physo141748;rank=2 scaffold_103 . exon 16257 16600 . - . ID=Physo141748.2;Parent=Physo141748;constitutive=1;ensembl_phase=1;rank=2 scaffold_103 . CDS 16775 17279 . - 0 ID=Physo141748;Parent=Physo141748;rank=1 scaffold_103 . exon 16775 17279 . - . ID=Physo141748.1;Parent=Physo141748;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . repeat_region 19376 20817 . ? . description=dust scaffold_103 . repeat_region 21010 21029 . ? . description=dust scaffold_103 . biological_region 21541 21543 0.999 - . logic_name=eponine scaffold_103 . repeat_region 22467 22477 . ? . description=dust scaffold_103 . repeat_region 22662 22681 . ? . description=dust scaffold_103 . biological_region 23163 23166 0.999 + . logic_name=eponine scaffold_103 ensembl protein_coding_gene 20975 21688 . + . ID=Physo141749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030004;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 20975 21688 . + . ID=Physo141749;Parent=Physo141749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 20975 21498 . + 0 ID=Physo141749;Parent=Physo141749;rank=1 scaffold_103 . exon 20975 21498 . + . ID=Physo141749.1;Parent=Physo141749;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 21554 21626 . + 0 ID=Physo141749;Parent=Physo141749;rank=2 scaffold_103 . exon 21554 21688 . + . ID=Physo141749.2;Parent=Physo141749;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_103 ensembl protein_coding_gene 22627 23351 . + . ID=Physo141750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030005;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 22627 23351 . + . ID=Physo141750;Parent=Physo141750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 22627 23289 . + 0 ID=Physo141750;Parent=Physo141750;rank=1 scaffold_103 . exon 22627 23351 . + . ID=Physo141750.1;Parent=Physo141750;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_103 ensembl protein_coding_gene 23895 25503 . - . ID=Physo141751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030006;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 23895 25503 . - . ID=Physo141751;Parent=Physo141751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 23895 24770 . - 0 ID=Physo141751;Parent=Physo141751;rank=2 scaffold_103 . exon 23895 24770 . - . ID=Physo141751.2;Parent=Physo141751;constitutive=1;rank=2 scaffold_103 . CDS 24847 25503 . - 0 ID=Physo141751;Parent=Physo141751;rank=1 scaffold_103 . exon 24847 25503 . - . ID=Physo141751.1;Parent=Physo141751;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 28299 30452 . - . ID=Physo141752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030007;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 28299 30452 . - . ID=Physo141752;Parent=Physo141752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 28299 29563 . - 0 ID=Physo141752;Parent=Physo141752;rank=3 scaffold_103 . exon 28299 29563 . - . ID=Physo141752.3;Parent=Physo141752;constitutive=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 29611 30066 . - 0 ID=Physo141752;Parent=Physo141752;rank=2 scaffold_103 . exon 29611 30066 . - . ID=Physo141752.2;Parent=Physo141752;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_103 . CDS 30095 30452 . - 0 ID=Physo141752;Parent=Physo141752;rank=1 scaffold_103 . repeat_region 31638 31688 . ? . description=trf scaffold_103 . repeat_region 31643 31687 . ? . description=trf scaffold_103 . repeat_region 38417 38464 . ? . description=trf scaffold_103 . repeat_region 39610 39706 . ? . description=trf scaffold_103 . repeat_region 39660 39748 . ? . description=trf scaffold_103 . exon 30095 30452 . - . ID=Physo141752.1;Parent=Physo141752;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 ensembl protein_coding_gene 30814 31708 . + . ID=Physo141753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030008;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 30814 31708 . + . ID=Physo141753;Parent=Physo141753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . exon 30814 31708 . + . ID=Physo141753.1;Parent=Physo141753;constitutive=1;ensembl_phase=-1;rank=1 scaffold_103 . CDS 30833 31708 . + 0 ID=Physo141753;Parent=Physo141753;rank=1 scaffold_103 ensembl protein_coding_gene 32810 33739 . + . ID=Physo141754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030009;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 32810 33739 . + . ID=Physo141754;Parent=Physo141754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 32810 33739 . + 0 ID=Physo141754;Parent=Physo141754;rank=1 scaffold_103 . exon 32810 33739 . + . ID=Physo141754.1;Parent=Physo141754;constitutive=1;rank=1 scaffold_103 . biological_region 40405 40410 0.999 + . logic_name=eponine scaffold_103 . biological_region 40474 40479 0.999 + . logic_name=eponine scaffold_103 . biological_region 40626 40630 0.999 - . logic_name=eponine scaffold_103 . biological_region 43632 43634 0.999 + . logic_name=eponine scaffold_103 . repeat_region 44898 44905 . ? . description=dust scaffold_103 . biological_region 45721 45730 0.999 + . logic_name=eponine scaffold_103 . biological_region 45817 45820 0.999 - . logic_name=eponine scaffold_103 . repeat_region 47201 47258 . ? . description=dust scaffold_103 . biological_region 48642 48642 0.999 - . logic_name=eponine scaffold_103 ensembl protein_coding_gene 39992 40812 . + . ID=Physo141755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030010;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 39992 40812 . + . ID=Physo141755;Parent=Physo141755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 39992 40171 . + 0 ID=Physo141755;Parent=Physo141755;rank=1 scaffold_103 . exon 39992 40171 . + . ID=Physo141755.1;Parent=Physo141755;constitutive=1;rank=1 scaffold_103 . CDS 40209 40675 . + 0 ID=Physo141755;Parent=Physo141755;rank=2 scaffold_103 . exon 40209 40675 . + . ID=Physo141755.2;Parent=Physo141755;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_103 . CDS 40695 40812 . + 0 ID=Physo141755;Parent=Physo141755;rank=3 scaffold_103 . exon 40695 40812 . + . ID=Physo141755.3;Parent=Physo141755;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 ensembl protein_coding_gene 45683 46087 . + . ID=Physo141756;biotype=protein_coding;description=PsAvh238 [Source:UniProtKB/TrEMBL%3BAcc:E0W5L0];external_name=estExt_fgenesh1_pg.C_1030011;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 45683 46087 . + . ID=Physo141756;Parent=Physo141756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 45683 46087 . + 0 ID=Physo141756;Parent=Physo141756;rank=1 scaffold_103 . exon 45683 46087 . + . ID=Physo141756.1;Parent=Physo141756;constitutive=1;rank=1 scaffold_103 . repeat_region 51081 51173 . ? . description=trf scaffold_103 . repeat_region 56712 56758 . ? . description=trf scaffold_103 . repeat_region 56805 56842 . ? . description=trf scaffold_103 ensembl protein_coding_gene 57370 57699 . - . ID=Physo141757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030012;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 57370 57699 . - . ID=Physo141757;Parent=Physo141757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 57370 57699 . - 0 ID=Physo141757;Parent=Physo141757;rank=1 scaffold_103 . exon 57370 57699 . - . ID=Physo141757.1;Parent=Physo141757;constitutive=1;rank=1 scaffold_103 . biological_region 60288 60289 0.999 + . logic_name=eponine scaffold_103 . biological_region 60397 60399 0.999 - . logic_name=eponine scaffold_103 . repeat_region 64273 64283 . ? . description=dust scaffold_103 . repeat_region 65207 65218 . ? . description=dust scaffold_103 . repeat_region 68187 68200 . ? . description=dust scaffold_103 . biological_region 68196 68199 0.999 + . logic_name=eponine scaffold_103 . repeat_region 72287 72336 . ? . description=trf scaffold_103 ensembl protein_coding_gene 76858 77477 . + . ID=Physo141758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030013;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 76858 77477 . + . ID=Physo141758;Parent=Physo141758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 76858 77094 . + 0 ID=Physo141758;Parent=Physo141758;rank=1 scaffold_103 . exon 76858 77094 . + . ID=Physo141758.1;Parent=Physo141758;constitutive=1;rank=1 scaffold_103 . CDS 77163 77477 . + 0 ID=Physo141758;Parent=Physo141758;rank=2 scaffold_103 . exon 77163 77477 . + . ID=Physo141758.2;Parent=Physo141758;constitutive=1;rank=2 scaffold_103 ensembl protein_coding_gene 77728 78810 . - . ID=Physo141759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030014;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 77728 78810 . - . ID=Physo141759;Parent=Physo141759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 77728 78304 . - 0 ID=Physo141759;Parent=Physo141759;rank=2 scaffold_103 . exon 77728 78304 . - . ID=Physo141759.2;Parent=Physo141759;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 78380 78810 . - 0 ID=Physo141759;Parent=Physo141759;rank=1 scaffold_103 . exon 78380 78810 . - . ID=Physo141759.1;Parent=Physo141759;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . repeat_region 80729 83232 . ? . description=dust scaffold_103 . biological_region 83550 83554 0.999 + . logic_name=eponine scaffold_103 . biological_region 83819 83821 0.999 + . logic_name=eponine scaffold_103 . biological_region 83926 83930 0.999 + . logic_name=eponine scaffold_103 . biological_region 83977 83981 0.999 + . logic_name=eponine scaffold_103 . biological_region 84063 84065 0.999 - . logic_name=eponine scaffold_103 . repeat_region 84593 84732 . ? . description=dust scaffold_103 . biological_region 87676 87680 0.999 + . logic_name=eponine scaffold_103 . biological_region 87945 87947 0.999 + . logic_name=eponine scaffold_103 . biological_region 88052 88056 0.999 + . logic_name=eponine scaffold_103 . biological_region 88103 88107 0.999 + . logic_name=eponine scaffold_103 . biological_region 88189 88191 0.999 - . logic_name=eponine scaffold_103 ensembl protein_coding_gene 83500 84208 . + . ID=Physo141760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030015;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 83500 84208 . + . ID=Physo141760;Parent=Physo141760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 83500 84204 . + 0 ID=Physo141760;Parent=Physo141760;rank=1 scaffold_103 . exon 83500 84208 . + . ID=Physo141760.1;Parent=Physo141760;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_103 ensembl protein_coding_gene 87599 88334 . + . ID=Physo141761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030016;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 87599 88334 . + . ID=Physo141761;Parent=Physo141761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 87599 88330 . + 0 ID=Physo141761;Parent=Physo141761;rank=1 scaffold_103 . exon 87599 88334 . + . ID=Physo141761.1;Parent=Physo141761;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_103 ensembl protein_coding_gene 89272 90007 . - . ID=Physo141762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030017;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 89272 90007 . - . ID=Physo141762;Parent=Physo141762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . exon 89272 90007 . - . ID=Physo141762.1;Parent=Physo141762;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_103 . CDS 89283 90005 . - 0 ID=Physo141762;Parent=Physo141762;rank=1 scaffold_103 . repeat_region 89778 89812 . ? . description=trf scaffold_103 . repeat_region 90035 90092 . ? . description=trf scaffold_103 . repeat_region 98713 98734 . ? . description=trf scaffold_103 . repeat_region 98920 98945 . ? . description=trf scaffold_103 ensembl protein_coding_gene 92770 94005 . + . ID=Physo141763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030018;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 92770 94005 . + . ID=Physo141763;Parent=Physo141763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . exon 92770 94005 . + . ID=Physo141763.1;Parent=Physo141763;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_103 . CDS 92772 93962 . + 0 ID=Physo141763;Parent=Physo141763;rank=1 scaffold_103 ensembl protein_coding_gene 97760 98947 . + . ID=Physo141764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030019;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 97760 98947 . + . ID=Physo141764;Parent=Physo141764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 97760 98947 . + 0 ID=Physo141764;Parent=Physo141764;rank=1 scaffold_103 . exon 97760 98947 . + . ID=Physo141764.1;Parent=Physo141764;constitutive=1;rank=1 scaffold_103 . repeat_region 100993 101140 . ? . description=dust scaffold_103 . repeat_region 101593 101621 . ? . description=dust scaffold_103 . biological_region 102921 102927 0.999 - . logic_name=eponine scaffold_103 . biological_region 103265 103266 0.999 + . logic_name=eponine scaffold_103 . repeat_region 104167 104178 . ? . description=dust scaffold_103 . repeat_region 105918 105931 . ? . description=dust scaffold_103 ensembl protein_coding_gene 99964 100756 . + . ID=Physo141765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030020;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 99964 100756 . + . ID=Physo141765;Parent=Physo141765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 99964 100095 . + 0 ID=Physo141765;Parent=Physo141765;rank=1 scaffold_103 . exon 99964 100095 . + . ID=Physo141765.1;Parent=Physo141765;constitutive=1;rank=1 scaffold_103 . CDS 100160 100756 . + 0 ID=Physo141765;Parent=Physo141765;rank=2 scaffold_103 . exon 100160 100756 . + . ID=Physo141765.2;Parent=Physo141765;constitutive=1;rank=2 scaffold_103 ensembl protein_coding_gene 100974 102584 . - . ID=Physo141766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030021;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 100974 102584 . - . ID=Physo141766;Parent=Physo141766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 100974 102584 . - 0 ID=Physo141766;Parent=Physo141766;rank=1 scaffold_103 . exon 100974 102584 . - . ID=Physo141766.1;Parent=Physo141766;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 103111 103458 . + . ID=Physo141767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030022;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 103111 103458 . + . ID=Physo141767;Parent=Physo141767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 103111 103458 . + 0 ID=Physo141767;Parent=Physo141767;rank=1 scaffold_103 . exon 103111 103458 . + . ID=Physo141767.1;Parent=Physo141767;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 104380 105731 . - . ID=Physo141768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030023;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 104380 105731 . - . ID=Physo141768;Parent=Physo141768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . exon 104380 104551 . - . ID=Physo141768.8;Parent=Physo141768;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=8 scaffold_103 . CDS 104508 104551 . - 0 ID=Physo141768;Parent=Physo141768;rank=8 scaffold_103 . CDS 104625 104690 . - 0 ID=Physo141768;Parent=Physo141768;rank=7 scaffold_103 . exon 104625 104690 . - . ID=Physo141768.7;Parent=Physo141768;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_103 . CDS 104779 104821 . - 0 ID=Physo141768;Parent=Physo141768;rank=6 scaffold_103 . exon 104779 104821 . - . ID=Physo141768.6;Parent=Physo141768;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_103 . CDS 104899 105097 . - 0 ID=Physo141768;Parent=Physo141768;rank=5 scaffold_103 . exon 104899 105097 . - . ID=Physo141768.5;Parent=Physo141768;constitutive=1;ensembl_phase=2;rank=5 scaffold_103 . CDS 105171 105267 . - 0 ID=Physo141768;Parent=Physo141768;rank=4 scaffold_103 . exon 105171 105267 . - . ID=Physo141768.4;Parent=Physo141768;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_103 . CDS 105358 105472 . - 0 ID=Physo141768;Parent=Physo141768;rank=3 scaffold_103 . exon 105358 105472 . - . ID=Physo141768.3;Parent=Physo141768;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_103 . CDS 105544 105618 . - 0 ID=Physo141768;Parent=Physo141768;rank=2 scaffold_103 . exon 105544 105618 . - . ID=Physo141768.2;Parent=Physo141768;constitutive=1;rank=2 scaffold_103 . CDS 105696 105731 . - 0 ID=Physo141768;Parent=Physo141768;rank=1 scaffold_103 . exon 105696 105731 . - . ID=Physo141768.1;Parent=Physo141768;constitutive=1;rank=1 scaffold_103 . repeat_region 117505 117532 . ? . description=trf scaffold_103 ensembl protein_coding_gene 111110 112954 . + . ID=Physo141769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030024;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 111110 112954 . + . ID=Physo141769;Parent=Physo141769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 111110 112954 . + 0 ID=Physo141769;Parent=Physo141769;rank=1 scaffold_103 . exon 111110 112954 . + . ID=Physo141769.1;Parent=Physo141769;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 113130 114207 . + . ID=Physo141770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030025;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 113130 114207 . + . ID=Physo141770;Parent=Physo141770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 113130 113236 . + 0 ID=Physo141770;Parent=Physo141770;rank=1 scaffold_103 . exon 113130 113236 . + . ID=Physo141770.1;Parent=Physo141770;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 113481 113536 . + 0 ID=Physo141770;Parent=Physo141770;rank=2 scaffold_103 . exon 113481 113536 . + . ID=Physo141770.2;Parent=Physo141770;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 113599 113859 . + 0 ID=Physo141770;Parent=Physo141770;rank=3 scaffold_103 . exon 113599 113859 . + . ID=Physo141770.3;Parent=Physo141770;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 113930 114052 . + 0 ID=Physo141770;Parent=Physo141770;rank=4 scaffold_103 . exon 113930 114052 . + . ID=Physo141770.4;Parent=Physo141770;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_103 . CDS 114155 114207 . + 0 ID=Physo141770;Parent=Physo141770;rank=5 scaffold_103 . exon 114155 114207 . + . ID=Physo141770.5;Parent=Physo141770;constitutive=1;ensembl_phase=1;rank=5 scaffold_103 ensembl protein_coding_gene 114403 117211 . - . ID=Physo141771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030026;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 114403 117211 . - . ID=Physo141771;Parent=Physo141771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 114403 114855 . - 0 ID=Physo141771;Parent=Physo141771;rank=7 scaffold_103 . exon 114403 114855 . - . ID=Physo141771.7;Parent=Physo141771;constitutive=1;rank=7 scaffold_103 . CDS 114927 115175 . - 0 ID=Physo141771;Parent=Physo141771;rank=6 scaffold_103 . exon 114927 115175 . - . ID=Physo141771.6;Parent=Physo141771;constitutive=1;rank=6 scaffold_103 . CDS 115242 115418 . - 0 ID=Physo141771;Parent=Physo141771;rank=5 scaffold_103 . exon 115242 115418 . - . ID=Physo141771.5;Parent=Physo141771;constitutive=1;rank=5 scaffold_103 . CDS 115484 116450 . - 0 ID=Physo141771;Parent=Physo141771;rank=4 scaffold_103 . exon 115484 116450 . - . ID=Physo141771.4;Parent=Physo141771;constitutive=1;ensembl_phase=2;rank=4 scaffold_103 . CDS 116528 116571 . - 0 ID=Physo141771;Parent=Physo141771;rank=3 scaffold_103 . exon 116528 116571 . - . ID=Physo141771.3;Parent=Physo141771;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_103 . CDS 116642 117037 . - 0 ID=Physo141771;Parent=Physo141771;rank=2 scaffold_103 . exon 116642 117037 . - . ID=Physo141771.2;Parent=Physo141771;constitutive=1;rank=2 scaffold_103 . CDS 117116 117211 . - 0 ID=Physo141771;Parent=Physo141771;rank=1 scaffold_103 . exon 117116 117211 . - . ID=Physo141771.1;Parent=Physo141771;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 117382 118491 . + . ID=Physo141772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030027;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 117382 118491 . + . ID=Physo141772;Parent=Physo141772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 117382 118491 . + 0 ID=Physo141772;Parent=Physo141772;rank=1 scaffold_103 . exon 117382 118491 . + . ID=Physo141772.1;Parent=Physo141772;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 118617 120943 . - . ID=Physo141773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030028;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 118617 120943 . - . ID=Physo141773;Parent=Physo141773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 118617 119721 . - 0 ID=Physo141773;Parent=Physo141773;rank=2 scaffold_103 . exon 118617 119721 . - . ID=Physo141773.2;Parent=Physo141773;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 119796 120943 . - 0 ID=Physo141773;Parent=Physo141773;rank=1 scaffold_103 . biological_region 120556 120559 0.999 - . logic_name=eponine scaffold_103 . biological_region 120769 120772 0.999 + . logic_name=eponine scaffold_103 . biological_region 121210 121214 0.999 - . logic_name=eponine scaffold_103 . biological_region 121473 121473 0.999 + . logic_name=eponine scaffold_103 . biological_region 121554 121560 0.999 + . logic_name=eponine scaffold_103 . biological_region 121594 121600 0.999 - . logic_name=eponine scaffold_103 . biological_region 121624 121626 0.999 - . logic_name=eponine scaffold_103 . biological_region 122710 122712 0.999 + . logic_name=eponine scaffold_103 . biological_region 124474 124478 0.999 + . logic_name=eponine scaffold_103 . biological_region 124919 124923 0.999 + . logic_name=eponine scaffold_103 . biological_region 125075 125077 0.999 - . logic_name=eponine scaffold_103 . biological_region 125145 125145 0.999 - . logic_name=eponine scaffold_103 . exon 119796 120943 . - . ID=Physo141773.1;Parent=Physo141773;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 ensembl protein_coding_gene 122640 124642 . - . ID=Physo141775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030030;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 122640 124642 . - . ID=Physo141775;Parent=Physo141775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 122640 123748 . - 0 ID=Physo141775;Parent=Physo141775;rank=3 scaffold_103 . exon 122640 123748 . - . ID=Physo141775.3;Parent=Physo141775;constitutive=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 123820 124018 . - 0 ID=Physo141775;Parent=Physo141775;rank=2 scaffold_103 . exon 123820 124018 . - . ID=Physo141775.2;Parent=Physo141775;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_103 . CDS 124100 124642 . - 0 ID=Physo141775;Parent=Physo141775;rank=1 scaffold_103 . exon 124100 124642 . - . ID=Physo141775.1;Parent=Physo141775;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 124894 125672 . + . ID=Physo141776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030031;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 124894 125672 . + . ID=Physo141776;Parent=Physo141776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 124894 125615 . + 0 ID=Physo141776;Parent=Physo141776;rank=1 scaffold_103 . exon 124894 125615 . + . ID=Physo141776.1;Parent=Physo141776;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 125669 125672 . + 0 ID=Physo141776;Parent=Physo141776;rank=2 scaffold_103 . exon 125669 125672 . + . ID=Physo141776.2;Parent=Physo141776;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 ensembl protein_coding_gene 128006 130833 . + . ID=Physo141777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030032;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 128006 130833 . + . ID=Physo141777;Parent=Physo141777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 128006 128392 . + 0 ID=Physo141777;Parent=Physo141777;rank=1 scaffold_103 . exon 128006 128392 . + . ID=Physo141777.1;Parent=Physo141777;constitutive=1;rank=1 scaffold_103 . CDS 128619 129159 . + 0 ID=Physo141777;Parent=Physo141777;rank=2 scaffold_103 . exon 128619 129159 . + . ID=Physo141777.2;Parent=Physo141777;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_103 . CDS 129274 129776 . + 0 ID=Physo141777;Parent=Physo141777;rank=3 scaffold_103 . exon 129274 129776 . + . ID=Physo141777.3;Parent=Physo141777;constitutive=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 129984 130666 . + 0 ID=Physo141777;Parent=Physo141777;rank=4 scaffold_103 . CDS 130722 130746 . + 0 ID=Physo141777;Parent=Physo141777;rank=5 scaffold_103 . repeat_region 134675 136989 . + . description=GypsyPi-1c_I-int scaffold_103 . repeat_region 137112 137131 . ? . description=dust scaffold_103 . repeat_region 137112 137131 . ? . description=trf scaffold_103 . exon 129984 130666 . + . ID=Physo141777.4;Parent=Physo141777;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_103 . exon 130722 130833 . + . ID=Physo141777.5;Parent=Physo141777;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_103 ensembl protein_coding_gene 134244 137304 . + . ID=Physo141778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030033;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 134244 137304 . + . ID=Physo141778;Parent=Physo141778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 134244 136617 . + 0 ID=Physo141778;Parent=Physo141778;rank=1 scaffold_103 . exon 134244 136617 . + . ID=Physo141778.1;Parent=Physo141778;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 136723 137257 . + 0 ID=Physo141778;Parent=Physo141778;rank=2 scaffold_103 . exon 136723 137257 . + . ID=Physo141778.2;Parent=Physo141778;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_103 . CDS 137298 137304 . + 0 ID=Physo141778;Parent=Physo141778;rank=3 scaffold_103 . exon 137298 137304 . + . ID=Physo141778.3;Parent=Physo141778;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 ensembl protein_coding_gene 137557 139072 . - . ID=Physo141779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030034;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 137557 139072 . - . ID=Physo141779;Parent=Physo141779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 137557 138562 . - 0 ID=Physo141779;Parent=Physo141779;rank=2 scaffold_103 . exon 137557 138562 . - . ID=Physo141779.2;Parent=Physo141779;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 138696 139072 . - 0 ID=Physo141779;Parent=Physo141779;rank=1 scaffold_103 . exon 138696 139072 . - . ID=Physo141779.1;Parent=Physo141779;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . biological_region 139907 139914 0.999 - . logic_name=eponine scaffold_103 . biological_region 139921 139924 0.999 + . logic_name=eponine scaffold_103 . biological_region 139932 139935 0.999 - . logic_name=eponine scaffold_103 . biological_region 139955 139958 0.999 - . logic_name=eponine scaffold_103 . biological_region 140040 140049 0.999 - . logic_name=eponine scaffold_103 . biological_region 140089 140092 0.999 - . logic_name=eponine scaffold_103 . biological_region 144506 144508 0.999 - . logic_name=eponine scaffold_103 . biological_region 147700 147702 0.999 - . logic_name=eponine scaffold_103 . biological_region 147795 147797 0.999 - . logic_name=eponine scaffold_103 ensembl protein_coding_gene 139751 140482 . + . ID=Physo141780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030035;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 139751 140482 . + . ID=Physo141780;Parent=Physo141780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 139751 140482 . + 0 ID=Physo141780;Parent=Physo141780;rank=1 scaffold_103 . exon 139751 140482 . + . ID=Physo141780.1;Parent=Physo141780;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 140991 146695 . - . ID=Physo141781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030036;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 140991 146695 . - . ID=Physo141781;Parent=Physo141781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 140991 141697 . - 0 ID=Physo141781;Parent=Physo141781;rank=7 scaffold_103 . exon 140991 141697 . - . ID=Physo141781.7;Parent=Physo141781;constitutive=1;ensembl_phase=1;rank=7 scaffold_103 . CDS 141941 142118 . - 0 ID=Physo141781;Parent=Physo141781;rank=6 scaffold_103 . exon 141941 142118 . - . ID=Physo141781.6;Parent=Physo141781;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_103 . CDS 142151 143199 . - 0 ID=Physo141781;Parent=Physo141781;rank=5 scaffold_103 . exon 142151 143199 . - . ID=Physo141781.5;Parent=Physo141781;constitutive=1;ensembl_phase=1;rank=5 scaffold_103 . CDS 143631 144398 . - 0 ID=Physo141781;Parent=Physo141781;rank=4 scaffold_103 . exon 143631 144398 . - . ID=Physo141781.4;Parent=Physo141781;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_103 . CDS 144496 145255 . - 0 ID=Physo141781;Parent=Physo141781;rank=3 scaffold_103 . exon 144496 145255 . - . ID=Physo141781.3;Parent=Physo141781;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_103 . CDS 145724 145955 . - 0 ID=Physo141781;Parent=Physo141781;rank=2 scaffold_103 . exon 145724 145955 . - . ID=Physo141781.2;Parent=Physo141781;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 146070 146695 . - 0 ID=Physo141781;Parent=Physo141781;rank=1 scaffold_103 . exon 146070 146695 . - . ID=Physo141781.1;Parent=Physo141781;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 ensembl protein_coding_gene 147227 147966 . + . ID=Physo141782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030037;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 147227 147966 . + . ID=Physo141782;Parent=Physo141782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 147227 147442 . + 0 ID=Physo141782;Parent=Physo141782;rank=1 scaffold_103 . exon 147227 147442 . + . ID=Physo141782.1;Parent=Physo141782;constitutive=1;rank=1 scaffold_103 . CDS 147466 147966 . + 0 ID=Physo141782;Parent=Physo141782;rank=2 scaffold_103 . exon 147466 147966 . + . ID=Physo141782.2;Parent=Physo141782;constitutive=1;rank=2 scaffold_103 . repeat_region 151176 151190 . ? . description=dust scaffold_103 . repeat_region 151412 151422 . ? . description=dust scaffold_103 . repeat_region 157907 157953 . ? . description=trf scaffold_103 . repeat_region 158422 158507 . ? . description=trf scaffold_103 . repeat_region 158487 158584 . ? . description=trf scaffold_103 . repeat_region 159317 159364 . ? . description=trf scaffold_103 ensembl protein_coding_gene 153313 153576 . - . ID=Physo122296;biotype=protein_coding;external_name=estExt_Genewise1.C_1030029;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 153313 153576 . - . ID=Physo122296;Parent=Physo122296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 153313 153531 . - 0 ID=Physo122296;Parent=Physo122296;rank=1 scaffold_103 . exon 153313 153576 . - . ID=Physo122296.1;Parent=Physo122296;constitutive=1;ensembl_phase=-1;rank=1 scaffold_103 ensembl protein_coding_gene 155465 156040 . - . ID=Physo141783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030038;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 155465 156040 . - . ID=Physo141783;Parent=Physo141783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 155465 155744 . - 0 ID=Physo141783;Parent=Physo141783;rank=2 scaffold_103 . exon 155465 155744 . - . ID=Physo141783.2;Parent=Physo141783;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 155985 156040 . - 0 ID=Physo141783;Parent=Physo141783;rank=1 scaffold_103 . exon 155985 156040 . - . ID=Physo141783.1;Parent=Physo141783;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . biological_region 167872 167873 0.999 + . logic_name=eponine scaffold_103 ensembl protein_coding_gene 160009 162574 . + . ID=Physo141784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030039;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 160009 162574 . + . ID=Physo141784;Parent=Physo141784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 160009 160129 . + 0 ID=Physo141784;Parent=Physo141784;rank=1 scaffold_103 . exon 160009 160129 . + . ID=Physo141784.1;Parent=Physo141784;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 160301 160408 . + 0 ID=Physo141784;Parent=Physo141784;rank=2 scaffold_103 . exon 160301 160408 . + . ID=Physo141784.2;Parent=Physo141784;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_103 . CDS 160506 161730 . + 0 ID=Physo141784;Parent=Physo141784;rank=3 scaffold_103 . exon 160506 161730 . + . ID=Physo141784.3;Parent=Physo141784;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_103 . CDS 161878 162574 . + 0 ID=Physo141784;Parent=Physo141784;rank=4 scaffold_103 . exon 161878 162574 . + . ID=Physo141784.4;Parent=Physo141784;constitutive=1;ensembl_phase=2;rank=4 scaffold_103 ensembl protein_coding_gene 164071 165474 . + . ID=Physo141785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030040;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 164071 165474 . + . ID=Physo141785;Parent=Physo141785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 164071 165146 . + 0 ID=Physo141785;Parent=Physo141785;rank=1 scaffold_103 . exon 164071 165146 . + . ID=Physo141785.1;Parent=Physo141785;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 165294 165474 . + 0 ID=Physo141785;Parent=Physo141785;rank=2 scaffold_103 . exon 165294 165474 . + . ID=Physo141785.2;Parent=Physo141785;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 ensembl protein_coding_gene 168346 169240 . + . ID=Physo141786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030041;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 168346 169240 . + . ID=Physo141786;Parent=Physo141786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 168346 168633 . + 0 ID=Physo141786;Parent=Physo141786;rank=1 scaffold_103 . exon 168346 168633 . + . ID=Physo141786.1;Parent=Physo141786;constitutive=1;rank=1 scaffold_103 . CDS 168694 168807 . + 0 ID=Physo141786;Parent=Physo141786;rank=2 scaffold_103 . exon 168694 168807 . + . ID=Physo141786.2;Parent=Physo141786;constitutive=1;rank=2 scaffold_103 . CDS 168847 169086 . + 0 ID=Physo141786;Parent=Physo141786;rank=3 scaffold_103 . exon 168847 169086 . + . ID=Physo141786.3;Parent=Physo141786;constitutive=1;rank=3 scaffold_103 . CDS 169109 169240 . + 0 ID=Physo141786;Parent=Physo141786;rank=4 scaffold_103 . exon 169109 169240 . + . ID=Physo141786.4;Parent=Physo141786;constitutive=1;rank=4 scaffold_103 . repeat_region 173749 173801 . ? . description=trf scaffold_103 . repeat_region 179115 179174 . ? . description=trf scaffold_103 . repeat_region 179161 179210 . ? . description=trf scaffold_103 . repeat_region 179224 179256 . ? . description=trf scaffold_103 . repeat_region 179341 179391 . ? . description=dust scaffold_103 ensembl protein_coding_gene 169996 172079 . - . ID=Physo141787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030042;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 169996 172079 . - . ID=Physo141787;Parent=Physo141787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 169996 170120 . - 0 ID=Physo141787;Parent=Physo141787;rank=3 scaffold_103 . exon 169996 170120 . - . ID=Physo141787.3;Parent=Physo141787;constitutive=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 170279 170420 . - 0 ID=Physo141787;Parent=Physo141787;rank=2 scaffold_103 . exon 170279 170420 . - . ID=Physo141787.2;Parent=Physo141787;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_103 . CDS 170514 172079 . - 0 ID=Physo141787;Parent=Physo141787;rank=1 scaffold_103 . exon 170514 172079 . - . ID=Physo141787.1;Parent=Physo141787;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 175182 178170 . + . ID=Physo141789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030044;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 175182 178170 . + . ID=Physo141789;Parent=Physo141789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . exon 175182 176421 . + . ID=Physo141789.1;Parent=Physo141789;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_103 . CDS 175187 176421 . + 0 ID=Physo141789;Parent=Physo141789;rank=1 scaffold_103 . CDS 176498 176647 . + 0 ID=Physo141789;Parent=Physo141789;rank=2 scaffold_103 . exon 176498 176647 . + . ID=Physo141789.2;Parent=Physo141789;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_103 . CDS 176946 178170 . + 0 ID=Physo141789;Parent=Physo141789;rank=3 scaffold_103 . exon 176946 178170 . + . ID=Physo141789.3;Parent=Physo141789;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 ensembl protein_coding_gene 178866 179349 . + . ID=Physo141790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030045;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 178866 179349 . + . ID=Physo141790;Parent=Physo141790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 178866 179297 . + 0 ID=Physo141790;Parent=Physo141790;rank=1 scaffold_103 . exon 178866 179349 . + . ID=Physo141790.1;Parent=Physo141790;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_103 ensembl protein_coding_gene 173495 174920 . + . ID=Physo158390;biotype=protein_coding;external_name=C_scaffold_103000001;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 173495 174920 . + . ID=Physo158390;Parent=Physo158390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 173495 174091 . + 0 ID=Physo158390;Parent=Physo158390;rank=1 scaffold_103 . exon 173495 174091 . + . ID=Physo158390.1;Parent=Physo158390;constitutive=1;rank=1 scaffold_103 . CDS 174113 174675 . + 0 ID=Physo158390;Parent=Physo158390;rank=2 scaffold_103 . exon 174113 174675 . + . ID=Physo158390.2;Parent=Physo158390;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_103 . CDS 174740 174920 . + 0 ID=Physo158390;Parent=Physo158390;rank=3 scaffold_103 . exon 174740 174920 . + . ID=Physo158390.3;Parent=Physo158390;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 . biological_region 180794 180795 0.999 - . logic_name=eponine scaffold_103 . biological_region 181930 181931 0.999 - . logic_name=eponine scaffold_103 . biological_region 184904 184905 0.999 + . logic_name=eponine scaffold_103 . biological_region 186040 186041 0.999 + . logic_name=eponine scaffold_103 . biological_region 187205 187208 0.999 + . logic_name=eponine scaffold_103 ensembl protein_coding_gene 180769 182180 . + . ID=Physo141791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030046;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 180769 182180 . + . ID=Physo141791;Parent=Physo141791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 180769 181012 . + 0 ID=Physo141791;Parent=Physo141791;rank=1 scaffold_103 . exon 180769 181012 . + . ID=Physo141791.1;Parent=Physo141791;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 181843 182180 . + 0 ID=Physo141791;Parent=Physo141791;rank=2 scaffold_103 . exon 181843 182180 . + . ID=Physo141791.2;Parent=Physo141791;constitutive=1;ensembl_phase=1;rank=2 scaffold_103 . repeat_region 190304 190328 . ? . description=trf scaffold_103 . repeat_region 196319 196339 . ? . description=dust scaffold_103 . repeat_region 196418 196436 . ? . description=dust scaffold_103 ensembl protein_coding_gene 197041 197862 . + . ID=Physo141792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030047;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 197041 197862 . + . ID=Physo141792;Parent=Physo141792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 197041 197243 . + 0 ID=Physo141792;Parent=Physo141792;rank=1 scaffold_103 . exon 197041 197243 . + . ID=Physo141792.1;Parent=Physo141792;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 197655 197862 . + 0 ID=Physo141792;Parent=Physo141792;rank=2 scaffold_103 . exon 197655 197862 . + . ID=Physo141792.2;Parent=Physo141792;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 ensembl protein_coding_gene 199127 202089 . + . ID=Physo141793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030048;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 199127 202089 . + . ID=Physo141793;Parent=Physo141793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 199127 199637 . + 0 ID=Physo141793;Parent=Physo141793;rank=1 scaffold_103 . exon 199127 199637 . + . ID=Physo141793.1;Parent=Physo141793;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 199874 200021 . + 0 ID=Physo141793;Parent=Physo141793;rank=2 scaffold_103 . CDS 200133 200220 . + 0 ID=Physo141793;Parent=Physo141793;rank=3 scaffold_103 . CDS 200355 200693 . + 0 ID=Physo141793;Parent=Physo141793;rank=4 scaffold_103 . CDS 200733 200949 . + 0 ID=Physo141793;Parent=Physo141793;rank=5 scaffold_103 . CDS 201285 201941 . + 0 ID=Physo141793;Parent=Physo141793;rank=6 scaffold_103 . CDS 202034 202089 . + 0 ID=Physo141793;Parent=Physo141793;rank=7 scaffold_103 . biological_region 202310 202313 0.999 + . logic_name=eponine scaffold_103 . biological_region 202401 202402 0.999 - . logic_name=eponine scaffold_103 . exon 199874 200021 . + . ID=Physo141793.2;Parent=Physo141793;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_103 . exon 200133 200220 . + . ID=Physo141793.3;Parent=Physo141793;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 . exon 200355 200693 . + . ID=Physo141793.4;Parent=Physo141793;constitutive=1;rank=4 scaffold_103 . exon 200733 200949 . + . ID=Physo141793.5;Parent=Physo141793;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_103 . exon 201285 201941 . + . ID=Physo141793.6;Parent=Physo141793;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_103 . exon 202034 202089 . + . ID=Physo141793.7;Parent=Physo141793;constitutive=1;ensembl_phase=1;rank=7 scaffold_103 ensembl protein_coding_gene 203374 208785 . - . ID=Physo141794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030049;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 203374 208785 . - . ID=Physo141794;Parent=Physo141794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 203374 204558 . - 0 ID=Physo141794;Parent=Physo141794;rank=4 scaffold_103 . exon 203374 204558 . - . ID=Physo141794.4;Parent=Physo141794;constitutive=1;rank=4 scaffold_103 . CDS 205188 205511 . - 0 ID=Physo141794;Parent=Physo141794;rank=3 scaffold_103 . exon 205188 205511 . - . ID=Physo141794.3;Parent=Physo141794;constitutive=1;rank=3 scaffold_103 . CDS 205642 207982 . - 0 ID=Physo141794;Parent=Physo141794;rank=2 scaffold_103 . exon 205642 207982 . - . ID=Physo141794.2;Parent=Physo141794;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 208301 208785 . - 0 ID=Physo141794;Parent=Physo141794;rank=1 scaffold_103 . exon 208301 208785 . - . ID=Physo141794.1;Parent=Physo141794;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . repeat_region 210412 210431 . ? . description=trf scaffold_103 . repeat_region 211055 211116 . ? . description=trf scaffold_103 . repeat_region 218012 220361 . - . description=GypsyPi-1c_I-int scaffold_103 ensembl protein_coding_gene 218166 218528 . - . ID=Physo109423;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1030002;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 218166 218528 . - . ID=Physo109423;Parent=Physo109423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 218166 218528 . - 0 ID=Physo109423;Parent=Physo109423;rank=1 scaffold_103 . exon 218166 218528 . - . ID=Physo109423.1;Parent=Physo109423;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 219102 219728 . - . ID=Physo109424;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1030003;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 219102 219728 . - . ID=Physo109424;Parent=Physo109424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 219102 219728 . - 0 ID=Physo109424;Parent=Physo109424;rank=1 scaffold_103 . exon 219102 219728 . - . ID=Physo109424.1;Parent=Physo109424;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 210801 211414 . - . ID=Physo122304;biotype=protein_coding;external_name=estExt_Genewise1.C_1030037;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 210801 211414 . - . ID=Physo122304;Parent=Physo122304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . exon 210801 210950 . - . ID=Physo122304.2;Parent=Physo122304;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_103 . CDS 210918 210950 . - 0 ID=Physo122304;Parent=Physo122304;rank=2 scaffold_103 . CDS 211052 211318 . - 0 ID=Physo122304;Parent=Physo122304;rank=1 scaffold_103 . exon 211052 211414 . - . ID=Physo122304.1;Parent=Physo122304;constitutive=1;ensembl_phase=-1;rank=1 scaffold_103 ensembl protein_coding_gene 209692 210743 . + . ID=Physo141795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030050;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 209692 210743 . + . ID=Physo141795;Parent=Physo141795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 209692 209729 . + 0 ID=Physo141795;Parent=Physo141795;rank=1 scaffold_103 . exon 209692 209729 . + . ID=Physo141795.1;Parent=Physo141795;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 209825 209885 . + 0 ID=Physo141795;Parent=Physo141795;rank=2 scaffold_103 . exon 209825 209885 . + . ID=Physo141795.2;Parent=Physo141795;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . CDS 209983 210029 . + 0 ID=Physo141795;Parent=Physo141795;rank=3 scaffold_103 . exon 209983 210029 . + . ID=Physo141795.3;Parent=Physo141795;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_103 . CDS 210119 210743 . + 0 ID=Physo141795;Parent=Physo141795;rank=4 scaffold_103 . exon 210119 210743 . + . ID=Physo141795.4;Parent=Physo141795;constitutive=1;ensembl_phase=2;rank=4 scaffold_103 ensembl protein_coding_gene 212024 214994 . + . ID=Physo141796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030051;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 212024 214994 . + . ID=Physo141796;Parent=Physo141796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 212024 212077 . + 0 ID=Physo141796;Parent=Physo141796;rank=1 scaffold_103 . exon 212024 212077 . + . ID=Physo141796.1;Parent=Physo141796;constitutive=1;rank=1 scaffold_103 . CDS 212145 214994 . + 0 ID=Physo141796;Parent=Physo141796;rank=2 scaffold_103 . exon 212145 214994 . + . ID=Physo141796.2;Parent=Physo141796;constitutive=1;rank=2 scaffold_103 ensembl protein_coding_gene 215681 216401 . + . ID=Physo141797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030052;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 215681 216401 . + . ID=Physo141797;Parent=Physo141797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 215681 215694 . + 0 ID=Physo141797;Parent=Physo141797;rank=1 scaffold_103 . exon 215681 215694 . + . ID=Physo141797.1;Parent=Physo141797;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 215936 216401 . + 0 ID=Physo141797;Parent=Physo141797;rank=2 scaffold_103 . exon 215936 216401 . + . ID=Physo141797.2;Parent=Physo141797;constitutive=1;ensembl_phase=2;rank=2 scaffold_103 . biological_region 220893 220898 0.999 + . logic_name=eponine scaffold_103 . biological_region 220932 220935 0.999 + . logic_name=eponine scaffold_103 . biological_region 220958 220963 0.999 - . logic_name=eponine scaffold_103 . biological_region 221085 221089 0.999 - . logic_name=eponine scaffold_103 . biological_region 221103 221107 0.999 + . logic_name=eponine scaffold_103 . biological_region 224015 224016 0.999 - . logic_name=eponine scaffold_103 . biological_region 224107 224109 0.999 - . logic_name=eponine scaffold_103 . repeat_region 224341 224357 . ? . description=dust scaffold_103 ensembl protein_coding_gene 219838 220690 . - . ID=Physo141800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030055;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 219838 220690 . - . ID=Physo141800;Parent=Physo141800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 219838 220049 . - 0 ID=Physo141800;Parent=Physo141800;rank=2 scaffold_103 . exon 219838 220049 . - . ID=Physo141800.2;Parent=Physo141800;constitutive=1;ensembl_phase=1;rank=2 scaffold_103 . CDS 220201 220690 . - 0 ID=Physo141800;Parent=Physo141800;rank=1 scaffold_103 . exon 220201 220690 . - . ID=Physo141800.1;Parent=Physo141800;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 ensembl protein_coding_gene 224517 224927 . + . ID=Physo141801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030056;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 224517 224927 . + . ID=Physo141801;Parent=Physo141801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 224517 224927 . + 0 ID=Physo141801;Parent=Physo141801;rank=1 scaffold_103 . exon 224517 224927 . + . ID=Physo141801.1;Parent=Physo141801;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 226051 228509 . - . ID=Physo141802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030057;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 226051 228509 . - . ID=Physo141802;Parent=Physo141802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 226051 226271 . - 0 ID=Physo141802;Parent=Physo141802;rank=3 scaffold_103 . exon 226051 226271 . - . ID=Physo141802.3;Parent=Physo141802;constitutive=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 226294 228225 . - 0 ID=Physo141802;Parent=Physo141802;rank=2 scaffold_103 . exon 226294 228225 . - . ID=Physo141802.2;Parent=Physo141802;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_103 . CDS 228404 228509 . - 0 ID=Physo141802;Parent=Physo141802;rank=1 scaffold_103 . exon 228404 228509 . - . ID=Physo141802.1;Parent=Physo141802;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . repeat_region 229930 230000 . ? . description=trf scaffold_103 . repeat_region 229960 229991 . ? . description=trf scaffold_103 . repeat_region 230159 230194 . ? . description=trf scaffold_103 . repeat_region 235170 235196 . ? . description=trf scaffold_103 . repeat_region 235364 235395 . ? . description=trf scaffold_103 ensembl protein_coding_gene 231239 234467 . + . ID=Physo141803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030058;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 231239 234467 . + . ID=Physo141803;Parent=Physo141803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 231239 231527 . + 0 ID=Physo141803;Parent=Physo141803;rank=1 scaffold_103 . exon 231239 231527 . + . ID=Physo141803.1;Parent=Physo141803;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 . CDS 231605 231659 . + 0 ID=Physo141803;Parent=Physo141803;rank=2 scaffold_103 . exon 231605 231659 . + . ID=Physo141803.2;Parent=Physo141803;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_103 . CDS 231738 233934 . + 0 ID=Physo141803;Parent=Physo141803;rank=3 scaffold_103 . exon 231738 233934 . + . ID=Physo141803.3;Parent=Physo141803;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 . CDS 234012 234467 . + 0 ID=Physo141803;Parent=Physo141803;rank=4 scaffold_103 . exon 234012 234467 . + . ID=Physo141803.4;Parent=Physo141803;constitutive=1;rank=4 scaffold_103 ensembl protein_coding_gene 238265 245443 . - . ID=Physo141804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030059;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 238265 245443 . - . ID=Physo141804;Parent=Physo141804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 238265 238295 . - 0 ID=Physo141804;Parent=Physo141804;rank=9 scaffold_103 . exon 238265 238295 . - . ID=Physo141804.9;Parent=Physo141804;constitutive=1;ensembl_phase=2;rank=9 scaffold_103 . CDS 238378 239082 . - 0 ID=Physo141804;Parent=Physo141804;rank=8 scaffold_103 . exon 238378 239082 . - . ID=Physo141804.8;Parent=Physo141804;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_103 . CDS 239168 239208 . - 0 ID=Physo141804;Parent=Physo141804;rank=7 scaffold_103 . exon 239168 239208 . - . ID=Physo141804.7;Parent=Physo141804;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_103 . CDS 239441 239495 . - 0 ID=Physo141804;Parent=Physo141804;rank=6 scaffold_103 . CDS 239697 240028 . - 0 ID=Physo141804;Parent=Physo141804;rank=5 scaffold_103 . CDS 240114 242303 . - 0 ID=Physo141804;Parent=Physo141804;rank=4 scaffold_103 . CDS 242352 244047 . - 0 ID=Physo141804;Parent=Physo141804;rank=3 scaffold_103 . CDS 244361 244776 . - 0 ID=Physo141804;Parent=Physo141804;rank=2 scaffold_103 . CDS 244856 245443 . - 0 ID=Physo141804;Parent=Physo141804;rank=1 scaffold_103 . biological_region 246003 246004 0.999 + . logic_name=eponine scaffold_103 . exon 239441 239495 . - . ID=Physo141804.6;Parent=Physo141804;constitutive=1;ensembl_phase=2;rank=6 scaffold_103 . exon 239697 240028 . - . ID=Physo141804.5;Parent=Physo141804;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_103 . exon 240114 242303 . - . ID=Physo141804.4;Parent=Physo141804;constitutive=1;rank=4 scaffold_103 . exon 242352 244047 . - . ID=Physo141804.3;Parent=Physo141804;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 . exon 244361 244776 . - . ID=Physo141804.2;Parent=Physo141804;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_103 . exon 244856 245443 . - . ID=Physo141804.1;Parent=Physo141804;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 248101 248712 . + . ID=Physo141806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030061;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 248101 248712 . + . ID=Physo141806;Parent=Physo141806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 248101 248145 . + 0 ID=Physo141806;Parent=Physo141806;rank=1 scaffold_103 . exon 248101 248145 . + . ID=Physo141806.1;Parent=Physo141806;constitutive=1;rank=1 scaffold_103 . CDS 248219 248603 . + 0 ID=Physo141806;Parent=Physo141806;rank=2 scaffold_103 . exon 248219 248603 . + . ID=Physo141806.2;Parent=Physo141806;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_103 . CDS 248648 248712 . + 0 ID=Physo141806;Parent=Physo141806;rank=3 scaffold_103 . exon 248648 248712 . + . ID=Physo141806.3;Parent=Physo141806;constitutive=1;ensembl_phase=1;rank=3 scaffold_103 ensembl protein_coding_gene 249061 250460 . - . ID=Physo141807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030062;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 249061 250460 . - . ID=Physo141807;Parent=Physo141807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . exon 249061 250460 . - . ID=Physo141807.1;Parent=Physo141807;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_103 . CDS 249207 250460 . - 0 ID=Physo141807;Parent=Physo141807;rank=1 scaffold_103 ensembl protein_coding_gene 246515 246913 . + . ID=Physo158394;biotype=protein_coding;external_name=C_scaffold_103000005;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 246515 246913 . + . ID=Physo158394;Parent=Physo158394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 246515 246913 . + 0 ID=Physo158394;Parent=Physo158394;rank=1 scaffold_103 . exon 246515 246913 . + . ID=Physo158394.1;Parent=Physo158394;constitutive=1;rank=1 scaffold_103 . repeat_region 257290 257318 . ? . description=trf scaffold_103 . repeat_region 259195 259252 . ? . description=trf scaffold_103 . repeat_region 259255 259303 . ? . description=trf scaffold_103 ensembl protein_coding_gene 253473 257327 . - . ID=Physo158395;biotype=protein_coding;external_name=C_scaffold_103000006;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 253473 257327 . - . ID=Physo158395;Parent=Physo158395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 253473 253633 . - 0 ID=Physo158395;Parent=Physo158395;rank=12 scaffold_103 . exon 253473 253633 . - . ID=Physo158395.12;Parent=Physo158395;constitutive=1;ensembl_phase=1;rank=12 scaffold_103 . CDS 253757 253921 . - 0 ID=Physo158395;Parent=Physo158395;rank=11 scaffold_103 . exon 253757 253921 . - . ID=Physo158395.11;Parent=Physo158395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_103 . CDS 254015 254181 . - 0 ID=Physo158395;Parent=Physo158395;rank=10 scaffold_103 . exon 254015 254181 . - . ID=Physo158395.10;Parent=Physo158395;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_103 . CDS 254215 254416 . - 0 ID=Physo158395;Parent=Physo158395;rank=9 scaffold_103 . exon 254215 254416 . - . ID=Physo158395.9;Parent=Physo158395;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_103 . CDS 254534 254638 . - 0 ID=Physo158395;Parent=Physo158395;rank=8 scaffold_103 . exon 254534 254638 . - . ID=Physo158395.8;Parent=Physo158395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_103 . CDS 254693 254845 . - 0 ID=Physo158395;Parent=Physo158395;rank=7 scaffold_103 . exon 254693 254845 . - . ID=Physo158395.7;Parent=Physo158395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_103 . CDS 254915 255148 . - 0 ID=Physo158395;Parent=Physo158395;rank=6 scaffold_103 . exon 254915 255148 . - . ID=Physo158395.6;Parent=Physo158395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_103 . CDS 255233 255367 . - 0 ID=Physo158395;Parent=Physo158395;rank=5 scaffold_103 . exon 255233 255367 . - . ID=Physo158395.5;Parent=Physo158395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_103 . CDS 255677 255856 . - 0 ID=Physo158395;Parent=Physo158395;rank=4 scaffold_103 . exon 255677 255856 . - . ID=Physo158395.4;Parent=Physo158395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_103 . CDS 256001 256285 . - 0 ID=Physo158395;Parent=Physo158395;rank=3 scaffold_103 . exon 256001 256285 . - . ID=Physo158395.3;Parent=Physo158395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 256307 256652 . - 0 ID=Physo158395;Parent=Physo158395;rank=2 scaffold_103 . exon 256307 256652 . - . ID=Physo158395.2;Parent=Physo158395;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_103 . CDS 256746 257327 . - 0 ID=Physo158395;Parent=Physo158395;rank=1 scaffold_103 . exon 256746 257327 . - . ID=Physo158395.1;Parent=Physo158395;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 257751 259929 . - . ID=Physo158397;biotype=protein_coding;external_name=C_scaffold_103000008;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 257751 259929 . - . ID=Physo158397;Parent=Physo158397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 257751 258788 . - 0 ID=Physo158397;Parent=Physo158397;rank=3 scaffold_103 . exon 257751 258788 . - . ID=Physo158397.3;Parent=Physo158397;constitutive=1;rank=3 scaffold_103 . CDS 258866 258946 . - 0 ID=Physo158397;Parent=Physo158397;rank=2 scaffold_103 . exon 258866 258946 . - . ID=Physo158397.2;Parent=Physo158397;constitutive=1;rank=2 scaffold_103 . CDS 259024 259929 . - 0 ID=Physo158397;Parent=Physo158397;rank=1 scaffold_103 . exon 259024 259929 . - . ID=Physo158397.1;Parent=Physo158397;constitutive=1;rank=1 scaffold_103 . repeat_region 259361 259519 . ? . description=dust scaffold_103 . biological_region 259602 259604 0.999 + . logic_name=eponine scaffold_103 . biological_region 259623 259625 0.999 + . logic_name=eponine scaffold_103 . biological_region 259692 259693 0.999 + . logic_name=eponine scaffold_103 . repeat_region 259813 259844 . ? . description=dust scaffold_103 . biological_region 259863 259866 0.999 + . logic_name=eponine scaffold_103 . biological_region 259872 259876 0.999 - . logic_name=eponine scaffold_103 . biological_region 259893 259897 0.999 - . logic_name=eponine scaffold_103 . biological_region 259920 259924 0.999 - . logic_name=eponine scaffold_103 . biological_region 260001 260004 0.999 - . logic_name=eponine scaffold_103 . repeat_region 263733 263759 . ? . description=dust scaffold_103 . biological_region 266689 266693 0.999 - . logic_name=eponine scaffold_103 ensembl protein_coding_gene 264909 269393 . - . ID=Physo109425;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1030004;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 264909 269393 . - . ID=Physo109425;Parent=Physo109425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 264909 264980 . - 0 ID=Physo109425;Parent=Physo109425;rank=2 scaffold_103 . exon 264909 264980 . - . ID=Physo109425.2;Parent=Physo109425;constitutive=1;rank=2 scaffold_103 . CDS 265014 269393 . - 0 ID=Physo109425;Parent=Physo109425;rank=1 scaffold_103 . exon 265014 269393 . - . ID=Physo109425.1;Parent=Physo109425;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 260713 261636 . + . ID=Physo158400;biotype=protein_coding;external_name=C_scaffold_103000011;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 260713 261636 . + . ID=Physo158400;Parent=Physo158400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 260713 260814 . + 0 ID=Physo158400;Parent=Physo158400;rank=1 scaffold_103 . exon 260713 260814 . + . ID=Physo158400.1;Parent=Physo158400;constitutive=1;rank=1 scaffold_103 . CDS 260875 260986 . + 0 ID=Physo158400;Parent=Physo158400;rank=2 scaffold_103 . exon 260875 260986 . + . ID=Physo158400.2;Parent=Physo158400;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_103 . CDS 261064 261152 . + 0 ID=Physo158400;Parent=Physo158400;rank=3 scaffold_103 . exon 261064 261152 . + . ID=Physo158400.3;Parent=Physo158400;constitutive=1;ensembl_phase=1;rank=3 scaffold_103 . CDS 261242 261301 . + 0 ID=Physo158400;Parent=Physo158400;rank=4 scaffold_103 . exon 261242 261301 . + . ID=Physo158400.4;Parent=Physo158400;constitutive=1;rank=4 scaffold_103 . CDS 261359 261457 . + 0 ID=Physo158400;Parent=Physo158400;rank=5 scaffold_103 . exon 261359 261457 . + . ID=Physo158400.5;Parent=Physo158400;constitutive=1;rank=5 scaffold_103 . CDS 261529 261636 . + 0 ID=Physo158400;Parent=Physo158400;rank=6 scaffold_103 . exon 261529 261636 . + . ID=Physo158400.6;Parent=Physo158400;constitutive=1;rank=6 scaffold_103 ensembl protein_coding_gene 272099 273517 . - . ID=Physo141811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030066;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 272099 273517 . - . ID=Physo141811;Parent=Physo141811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 272099 273517 . - 0 ID=Physo141811;Parent=Physo141811;rank=1 scaffold_103 . exon 272099 273517 . - . ID=Physo141811.1;Parent=Physo141811;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 273645 275090 . + . ID=Physo141812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030067;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 273645 275090 . + . ID=Physo141812;Parent=Physo141812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 273645 275090 . + 0 ID=Physo141812;Parent=Physo141812;rank=1 scaffold_103 . exon 273645 275090 . + . ID=Physo141812.1;Parent=Physo141812;constitutive=1;rank=1 scaffold_103 ensembl protein_coding_gene 275297 282160 . - . ID=Physo158401;biotype=protein_coding;external_name=C_scaffold_103000012;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 275297 282160 . - . ID=Physo158401;Parent=Physo158401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 275297 275991 . - 0 ID=Physo158401;Parent=Physo158401;rank=16 scaffold_103 . exon 275297 275991 . - . ID=Physo158401.16;Parent=Physo158401;constitutive=1;ensembl_phase=1;rank=16 scaffold_103 . CDS 276058 276172 . - 0 ID=Physo158401;Parent=Physo158401;rank=15 scaffold_103 . exon 276058 276172 . - . ID=Physo158401.15;Parent=Physo158401;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_103 . CDS 276246 277190 . - 0 ID=Physo158401;Parent=Physo158401;rank=14 scaffold_103 . exon 276246 277190 . - . ID=Physo158401.14;Parent=Physo158401;constitutive=1;rank=14 scaffold_103 . CDS 277214 277291 . - 0 ID=Physo158401;Parent=Physo158401;rank=13 scaffold_103 . exon 277214 277291 . - . ID=Physo158401.13;Parent=Physo158401;constitutive=1;rank=13 scaffold_103 . CDS 277323 278755 . - 0 ID=Physo158401;Parent=Physo158401;rank=12 scaffold_103 . exon 277323 278755 . - . ID=Physo158401.12;Parent=Physo158401;constitutive=1;ensembl_phase=1;rank=12 scaffold_103 . CDS 278897 279136 . - 0 ID=Physo158401;Parent=Physo158401;rank=11 scaffold_103 . exon 278897 279136 . - . ID=Physo158401.11;Parent=Physo158401;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_103 . CDS 279188 279454 . - 0 ID=Physo158401;Parent=Physo158401;rank=10 scaffold_103 . exon 279188 279454 . - . ID=Physo158401.10;Parent=Physo158401;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_103 . CDS 279653 279746 . - 0 ID=Physo158401;Parent=Physo158401;rank=9 scaffold_103 . CDS 279849 280007 . - 0 ID=Physo158401;Parent=Physo158401;rank=8 scaffold_103 . CDS 280053 280300 . - 0 ID=Physo158401;Parent=Physo158401;rank=7 scaffold_103 . CDS 280478 280552 . - 0 ID=Physo158401;Parent=Physo158401;rank=6 scaffold_103 . CDS 280577 280762 . - 0 ID=Physo158401;Parent=Physo158401;rank=5 scaffold_103 . CDS 280838 281072 . - 0 ID=Physo158401;Parent=Physo158401;rank=4 scaffold_103 . CDS 281136 281352 . - 0 ID=Physo158401;Parent=Physo158401;rank=3 scaffold_103 . CDS 281374 281911 . - 0 ID=Physo158401;Parent=Physo158401;rank=2 scaffold_103 . CDS 281998 282160 . - 0 ID=Physo158401;Parent=Physo158401;rank=1 scaffold_103 . biological_region 281874 281877 0.999 - . logic_name=eponine scaffold_103 . repeat_region 284257 284281 . ? . description=dust scaffold_103 . repeat_region 284257 284281 . ? . description=trf scaffold_103 . repeat_region 284473 284481 . ? . description=dust scaffold_103 ensembl protein_coding_gene 282537 284371 . + . ID=Physo141814;biotype=protein_coding;description=Protein kinase 141814 isoform 1 [Source:UniProtKB/TrEMBL%3BAcc:F4ZVD9];external_name=estExt_fgenesh1_pg.C_1030069;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 282537 284371 . + . ID=Physo141814;Parent=Physo141814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . exon 282537 282927 . + . ID=Physo141814.1;Parent=Physo141814;constitutive=1;ensembl_phase=-1;rank=1 scaffold_103 . CDS 282544 282927 . + 0 ID=Physo141814;Parent=Physo141814;rank=1 scaffold_103 . CDS 283019 283296 . + 0 ID=Physo141814;Parent=Physo141814;rank=2 scaffold_103 . exon 283019 283296 . + . ID=Physo141814.2;Parent=Physo141814;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_103 . CDS 283390 283474 . + 0 ID=Physo141814;Parent=Physo141814;rank=3 scaffold_103 . exon 283390 283474 . + . ID=Physo141814.3;Parent=Physo141814;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 . CDS 283538 283574 . + 0 ID=Physo141814;Parent=Physo141814;rank=4 scaffold_103 . exon 283538 283574 . + . ID=Physo141814.4;Parent=Physo141814;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_103 . CDS 283644 283798 . + 0 ID=Physo141814;Parent=Physo141814;rank=5 scaffold_103 . exon 283644 283798 . + . ID=Physo141814.5;Parent=Physo141814;constitutive=1;ensembl_phase=1;rank=5 scaffold_103 . CDS 283872 284348 . + 0 ID=Physo141814;Parent=Physo141814;rank=6 scaffold_103 . exon 283872 284371 . + . ID=Physo141814.6;Parent=Physo141814;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_103 ensembl protein_coding_gene 285844 291774 . + . ID=Physo141815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030070;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 285844 291774 . + . ID=Physo141815;Parent=Physo141815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 285844 291774 . + 0 ID=Physo141815;Parent=Physo141815;rank=1 scaffold_103 . exon 285844 291774 . + . ID=Physo141815.1;Parent=Physo141815;constitutive=1;rank=1 scaffold_103 . exon 279653 279746 . - . ID=Physo158401.9;Parent=Physo158401;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_103 . exon 279849 280007 . - . ID=Physo158401.8;Parent=Physo158401;constitutive=1;rank=8 scaffold_103 . exon 280053 280300 . - . ID=Physo158401.7;Parent=Physo158401;constitutive=1;ensembl_phase=1;rank=7 scaffold_103 . exon 280478 280552 . - . ID=Physo158401.6;Parent=Physo158401;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_103 . exon 280577 280762 . - . ID=Physo158401.5;Parent=Physo158401;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_103 . exon 280838 281072 . - . ID=Physo158401.4;Parent=Physo158401;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_103 . exon 281136 281352 . - . ID=Physo158401.3;Parent=Physo158401;constitutive=1;ensembl_phase=2;rank=3 scaffold_103 . exon 281374 281911 . - . ID=Physo158401.2;Parent=Physo158401;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_103 . exon 281998 282160 . - . ID=Physo158401.1;Parent=Physo158401;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_103 ensembl protein_coding_gene 292236 294009 . + . ID=Physo141816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1030071;logic_name=jgi_physo1_1 scaffold_103 ensembl transcript 292236 294009 . + . ID=Physo141816;Parent=Physo141816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_103 . CDS 292236 293416 . + 0 ID=Physo141816;Parent=Physo141816;rank=1 scaffold_103 . exon 292236 293416 . + . ID=Physo141816.1;Parent=Physo141816;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_103 . CDS 293496 294009 . + 0 ID=Physo141816;Parent=Physo141816;rank=2 scaffold_103 . exon 293496 294009 . + . ID=Physo141816.2;Parent=Physo141816;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_102 1 301692 scaffold_102 . repeat_region 515 545 . - . description=Polinton-1_PI scaffold_102 . repeat_region 699 913 . - . description=Polinton-1_PI scaffold_102 . repeat_region 1290 1435 . + . description=(CTA)n scaffold_102 . repeat_region 1306 1403 . ? . description=trf scaffold_102 . repeat_region 1335 1406 . ? . description=trf scaffold_102 . repeat_region 1345 1435 . ? . description=dust scaffold_102 . biological_region 2626 2629 0.999 - . logic_name=eponine scaffold_102 . repeat_region 2996 3045 . ? . description=dust scaffold_102 . repeat_region 3663 3670 . ? . description=dust scaffold_102 . biological_region 5527 5528 0.999 - . logic_name=eponine scaffold_102 . repeat_region 6902 6943 . ? . description=trf scaffold_102 . repeat_region 7116 7156 . ? . description=trf scaffold_102 . repeat_region 8165 8204 . ? . description=trf scaffold_102 ensembl protein_coding_gene 5356 6477 . + . ID=Physo109413;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1020001;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 5356 6477 . + . ID=Physo109413;Parent=Physo109413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 5356 5478 . + . ID=Physo109413.1;Parent=Physo109413;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_102 . CDS 5382 5478 . + 0 ID=Physo109413;Parent=Physo109413;rank=1 scaffold_102 . CDS 5567 5832 . + 0 ID=Physo109413;Parent=Physo109413;rank=2 scaffold_102 . exon 5567 5832 . + . ID=Physo109413.2;Parent=Physo109413;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 5916 6278 . + 0 ID=Physo109413;Parent=Physo109413;rank=3 scaffold_102 . exon 5916 6477 . + . ID=Physo109413.3;Parent=Physo109413;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_102 ensembl protein_coding_gene 1 880 . - . ID=Physo141678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020001;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 1 880 . - . ID=Physo141678;Parent=Physo141678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 1 258 . - . ID=Physo141678.3;Parent=Physo141678;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_102 . CDS 2 258 . - 0 ID=Physo141678;Parent=Physo141678;rank=3 scaffold_102 . CDS 317 546 . - 0 ID=Physo141678;Parent=Physo141678;rank=2 scaffold_102 . exon 317 546 . - . ID=Physo141678.2;Parent=Physo141678;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 679 863 . - 0 ID=Physo141678;Parent=Physo141678;rank=1 scaffold_102 . exon 679 880 . - . ID=Physo141678.1;Parent=Physo141678;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_102 ensembl protein_coding_gene 3956 5186 . + . ID=Physo141679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020002;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 3956 5186 . + . ID=Physo141679;Parent=Physo141679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 3956 4026 . + . ID=Physo141679.1;Parent=Physo141679;constitutive=1;ensembl_phase=-1;rank=1 scaffold_102 . CDS 3964 4026 . + 0 ID=Physo141679;Parent=Physo141679;rank=1 scaffold_102 . CDS 4165 4292 . + 0 ID=Physo141679;Parent=Physo141679;rank=2 scaffold_102 . exon 4165 4292 . + . ID=Physo141679.2;Parent=Physo141679;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_102 . CDS 4392 4459 . + 0 ID=Physo141679;Parent=Physo141679;rank=3 scaffold_102 . exon 4392 4459 . + . ID=Physo141679.3;Parent=Physo141679;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_102 . CDS 4530 4564 . + 0 ID=Physo141679;Parent=Physo141679;rank=4 scaffold_102 . exon 4530 4564 . + . ID=Physo141679.4;Parent=Physo141679;constitutive=1;ensembl_phase=1;rank=4 scaffold_102 . CDS 4658 4771 . + 0 ID=Physo141679;Parent=Physo141679;rank=5 scaffold_102 . exon 4658 4771 . + . ID=Physo141679.5;Parent=Physo141679;constitutive=1;rank=5 scaffold_102 . CDS 4846 4894 . + 0 ID=Physo141679;Parent=Physo141679;rank=6 scaffold_102 . exon 4846 4894 . + . ID=Physo141679.6;Parent=Physo141679;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_102 . CDS 4983 5110 . + 0 ID=Physo141679;Parent=Physo141679;rank=7 scaffold_102 . exon 4983 5186 . + . ID=Physo141679.7;Parent=Physo141679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_102 ensembl protein_coding_gene 6697 7480 . + . ID=Physo141681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020004;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 6697 7480 . + . ID=Physo141681;Parent=Physo141681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 6697 7171 . + 0 ID=Physo141681;Parent=Physo141681;rank=1 scaffold_102 . exon 6697 7171 . + . ID=Physo141681.1;Parent=Physo141681;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 7269 7480 . + 0 ID=Physo141681;Parent=Physo141681;rank=2 scaffold_102 . exon 7269 7480 . + . ID=Physo141681.2;Parent=Physo141681;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 ensembl protein_coding_gene 7750 9492 . - . ID=Physo141682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020005;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 7750 9492 . - . ID=Physo141682;Parent=Physo141682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 7750 8812 . - 0 ID=Physo141682;Parent=Physo141682;rank=2 scaffold_102 . exon 7750 8812 . - . ID=Physo141682.2;Parent=Physo141682;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 9398 9492 . - 0 ID=Physo141682;Parent=Physo141682;rank=1 scaffold_102 . exon 9398 9492 . - . ID=Physo141682.1;Parent=Physo141682;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 ensembl protein_coding_gene 11789 12256 . + . ID=Physo109414;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1020002;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 11789 12256 . + . ID=Physo109414;Parent=Physo109414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 11789 12256 . + 0 ID=Physo109414;Parent=Physo109414;rank=1 scaffold_102 . exon 11789 12256 . + . ID=Physo109414.1;Parent=Physo109414;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 13661 14523 . - . ID=Physo141684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020007;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 13661 14523 . - . ID=Physo141684;Parent=Physo141684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 13661 13678 . - 0 ID=Physo141684;Parent=Physo141684;rank=2 scaffold_102 . exon 13661 13678 . - . ID=Physo141684.2;Parent=Physo141684;constitutive=1;rank=2 scaffold_102 . CDS 13708 14523 . - 0 ID=Physo141684;Parent=Physo141684;rank=1 scaffold_102 . exon 13708 14523 . - . ID=Physo141684.1;Parent=Physo141684;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 14728 17090 . + . ID=Physo141685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020008;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 14728 17090 . + . ID=Physo141685;Parent=Physo141685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 14728 16902 . + 0 ID=Physo141685;Parent=Physo141685;rank=1 scaffold_102 . exon 14728 17090 . + . ID=Physo141685.1;Parent=Physo141685;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_102 ensembl protein_coding_gene 17295 18635 . - . ID=Physo141686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020009;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 17295 18635 . - . ID=Physo141686;Parent=Physo141686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 17295 18635 . - 0 ID=Physo141686;Parent=Physo141686;rank=1 scaffold_102 . exon 17295 18635 . - . ID=Physo141686.1;Parent=Physo141686;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 19396 21420 . + . ID=Physo141687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020010;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 19396 21420 . + . ID=Physo141687;Parent=Physo141687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 19396 21342 . + 0 ID=Physo141687;Parent=Physo141687;rank=1 scaffold_102 . exon 19396 21420 . + . ID=Physo141687.1;Parent=Physo141687;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_102 . biological_region 19549 19556 0.999 - . logic_name=eponine scaffold_102 . repeat_region 19676 19703 . ? . description=trf scaffold_102 . biological_region 19743 19750 0.999 - . logic_name=eponine scaffold_102 . biological_region 19843 19848 0.999 + . logic_name=eponine scaffold_102 . biological_region 19901 19905 0.999 + . logic_name=eponine scaffold_102 . biological_region 19940 19952 0.999 + . logic_name=eponine scaffold_102 . biological_region 19947 19948 0.999 - . logic_name=eponine scaffold_102 . repeat_region 21775 21824 . ? . description=dust scaffold_102 . repeat_region 22860 27427 . ? . description=dust scaffold_102 . repeat_region 27428 38169 . ? . description=dust scaffold_102 ensembl protein_coding_gene 22458 22781 . - . ID=Physo122219;biotype=protein_coding;external_name=estExt_Genewise1.C_1020019;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 22458 22781 . - . ID=Physo122219;Parent=Physo122219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 22458 22507 . - . ID=Physo122219.3;Parent=Physo122219;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_102 . exon 22546 22572 . - . ID=Physo122219.2;Parent=Physo122219;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_102 . exon 22599 22781 . - . ID=Physo122219.1;Parent=Physo122219;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_102 . CDS 22621 22779 . - 0 ID=Physo122219;Parent=Physo122219;rank=1 scaffold_102 . repeat_region 39211 39229 . ? . description=dust scaffold_102 . repeat_region 39911 39968 . ? . description=trf scaffold_102 . repeat_region 40802 40845 . ? . description=trf scaffold_102 . biological_region 41003 41007 0.999 - . logic_name=eponine scaffold_102 . biological_region 41005 41007 0.999 + . logic_name=eponine scaffold_102 . repeat_region 42148 42168 . ? . description=trf scaffold_102 . biological_region 45049 45052 0.999 + . logic_name=eponine scaffold_102 . biological_region 46542 46542 0.999 + . logic_name=eponine scaffold_102 . repeat_region 47623 47664 . ? . description=trf scaffold_102 ensembl protein_coding_gene 44977 45766 . - . ID=Physo122221;biotype=protein_coding;external_name=estExt_Genewise1.C_1020021;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 44977 45766 . - . ID=Physo122221;Parent=Physo122221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 44977 45237 . - 0 ID=Physo122221;Parent=Physo122221;rank=3 scaffold_102 . exon 44977 45237 . - . ID=Physo122221.3;Parent=Physo122221;constitutive=1;rank=3 scaffold_102 . CDS 45307 45381 . - 0 ID=Physo122221;Parent=Physo122221;rank=2 scaffold_102 . exon 45307 45381 . - . ID=Physo122221.2;Parent=Physo122221;constitutive=1;rank=2 scaffold_102 . CDS 45452 45733 . - 0 ID=Physo122221;Parent=Physo122221;rank=1 scaffold_102 . exon 45452 45766 . - . ID=Physo122221.1;Parent=Physo122221;constitutive=1;ensembl_phase=-1;rank=1 scaffold_102 ensembl protein_coding_gene 46743 48211 . - . ID=Physo122226;biotype=protein_coding;external_name=estExt_Genewise1.C_1020026;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 46743 48211 . - . ID=Physo122226;Parent=Physo122226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 46743 47031 . - . ID=Physo122226.4;Parent=Physo122226;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_102 . CDS 46843 47031 . - 0 ID=Physo122226;Parent=Physo122226;rank=4 scaffold_102 . CDS 47106 47208 . - 0 ID=Physo122226;Parent=Physo122226;rank=3 scaffold_102 . exon 47106 47208 . - . ID=Physo122226.3;Parent=Physo122226;constitutive=1;ensembl_phase=2;rank=3 scaffold_102 . CDS 47279 47802 . - 0 ID=Physo122226;Parent=Physo122226;rank=2 scaffold_102 . exon 47279 47802 . - . ID=Physo122226.2;Parent=Physo122226;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_102 . CDS 47890 48186 . - 0 ID=Physo122226;Parent=Physo122226;rank=1 scaffold_102 . exon 47890 48211 . - . ID=Physo122226.1;Parent=Physo122226;constitutive=1;ensembl_phase=-1;rank=1 scaffold_102 ensembl protein_coding_gene 40764 42106 . + . ID=Physo141688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020011;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 40764 42106 . + . ID=Physo141688;Parent=Physo141688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 40764 40940 . + 0 ID=Physo141688;Parent=Physo141688;rank=1 scaffold_102 . exon 40764 40940 . + . ID=Physo141688.1;Parent=Physo141688;constitutive=1;rank=1 scaffold_102 . CDS 40985 42106 . + 0 ID=Physo141688;Parent=Physo141688;rank=2 scaffold_102 . exon 40985 42106 . + . ID=Physo141688.2;Parent=Physo141688;constitutive=1;rank=2 scaffold_102 ensembl protein_coding_gene 48871 50262 . + . ID=Physo109415;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1020003;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 48871 50262 . + . ID=Physo109415;Parent=Physo109415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 48871 50198 . + 0 ID=Physo109415;Parent=Physo109415;rank=1 scaffold_102 . exon 48871 50198 . + . ID=Physo109415.1;Parent=Physo109415;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . CDS 50223 50262 . + 0 ID=Physo109415;Parent=Physo109415;rank=2 scaffold_102 . exon 50223 50262 . + . ID=Physo109415.2;Parent=Physo109415;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 ensembl protein_coding_gene 50366 51002 . - . ID=Physo109416;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1020004;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 50366 51002 . - . ID=Physo109416;Parent=Physo109416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 50366 50789 . - 0 ID=Physo109416;Parent=Physo109416;rank=2 scaffold_102 . exon 50366 50789 . - . ID=Physo109416.2;Parent=Physo109416;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 50857 51002 . - 0 ID=Physo109416;Parent=Physo109416;rank=1 scaffold_102 . exon 50857 51002 . - . ID=Physo109416.1;Parent=Physo109416;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . repeat_region 61329 61378 . ? . description=dust scaffold_102 . repeat_region 62147 62154 . ? . description=dust scaffold_102 . repeat_region 67315 67322 . ? . description=dust scaffold_102 . repeat_region 68925 69168 . ? . description=trf scaffold_102 . repeat_region 68925 69168 . ? . description=trf scaffold_102 . repeat_region 68969 69034 . ? . description=trf scaffold_102 . repeat_region 69706 69846 . ? . description=trf scaffold_102 . repeat_region 69706 69869 . ? . description=trf scaffold_102 . repeat_region 69732 69828 . ? . description=trf scaffold_102 . repeat_region 70348 70374 . ? . description=trf scaffold_102 . repeat_region 73043 73114 . ? . description=trf scaffold_102 . repeat_region 73060 73113 . ? . description=trf scaffold_102 . biological_region 76983 76983 0.999 + . logic_name=eponine scaffold_102 ensembl protein_coding_gene 70873 72513 . + . ID=Physo141692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020015;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 70873 72513 . + . ID=Physo141692;Parent=Physo141692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 70873 72513 . + 0 ID=Physo141692;Parent=Physo141692;rank=1 scaffold_102 . exon 70873 72513 . + . ID=Physo141692.1;Parent=Physo141692;constitutive=1;rank=1 scaffold_102 . repeat_region 86457 86501 . ? . description=dust scaffold_102 . repeat_region 87416 87426 . ? . description=dust scaffold_102 ensembl protein_coding_gene 82353 84107 . - . ID=Physo141693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020016;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 82353 84107 . - . ID=Physo141693;Parent=Physo141693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 82353 84107 . - . ID=Physo141693.1;Parent=Physo141693;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_102 . CDS 82432 84069 . - 0 ID=Physo141693;Parent=Physo141693;rank=1 scaffold_102 . biological_region 94509 94513 0.999 + . logic_name=eponine scaffold_102 ensembl protein_coding_gene 94347 95942 . + . ID=Physo141694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020017;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 94347 95942 . + . ID=Physo141694;Parent=Physo141694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 94347 95942 . + . ID=Physo141694.1;Parent=Physo141694;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_102 . CDS 94605 95213 . + 0 ID=Physo141694;Parent=Physo141694;rank=1 scaffold_102 ensembl protein_coding_gene 96044 97639 . - . ID=Physo141695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020018;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 96044 97639 . - . ID=Physo141695;Parent=Physo141695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 96044 96697 . - 0 ID=Physo141695;Parent=Physo141695;rank=3 scaffold_102 . exon 96044 96697 . - . ID=Physo141695.3;Parent=Physo141695;constitutive=1;rank=3 scaffold_102 . CDS 97073 97220 . - 0 ID=Physo141695;Parent=Physo141695;rank=2 scaffold_102 . exon 97073 97220 . - . ID=Physo141695.2;Parent=Physo141695;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 97353 97639 . - 0 ID=Physo141695;Parent=Physo141695;rank=1 scaffold_102 . repeat_region 97906 97937 . ? . description=dust scaffold_102 . repeat_region 104349 104382 . ? . description=trf scaffold_102 . repeat_region 104622 104681 . ? . description=trf scaffold_102 . repeat_region 104622 104681 . ? . description=trf scaffold_102 . repeat_region 104622 104681 . ? . description=dust scaffold_102 . repeat_region 104622 104681 . + . description=(CGA)n scaffold_102 ensembl protein_coding_gene 106867 107133 . - . ID=Physo122237;biotype=protein_coding;external_name=estExt_Genewise1.C_1020037;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 106867 107133 . - . ID=Physo122237;Parent=Physo122237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 106867 107112 . - 0 ID=Physo122237;Parent=Physo122237;rank=1 scaffold_102 . exon 106867 107133 . - . ID=Physo122237.1;Parent=Physo122237;constitutive=1;ensembl_phase=-1;rank=1 scaffold_102 . exon 97353 97639 . - . ID=Physo141695.1;Parent=Physo141695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 ensembl protein_coding_gene 100570 102138 . + . ID=Physo141696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020019;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 100570 102138 . + . ID=Physo141696;Parent=Physo141696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 100570 102138 . + 0 ID=Physo141696;Parent=Physo141696;rank=1 scaffold_102 . exon 100570 102138 . + . ID=Physo141696.1;Parent=Physo141696;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 104457 105032 . + . ID=Physo141697;biotype=protein_coding;description=PsAvh25 [Source:UniProtKB/TrEMBL%3BAcc:E0W5K7];external_name=estExt_fgenesh1_pg.C_1020020;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 104457 105032 . + . ID=Physo141697;Parent=Physo141697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 104457 105032 . + 0 ID=Physo141697;Parent=Physo141697;rank=1 scaffold_102 . exon 104457 105032 . + . ID=Physo141697.1;Parent=Physo141697;constitutive=1;rank=1 scaffold_102 . biological_region 115471 115472 0.999 + . logic_name=eponine scaffold_102 ensembl protein_coding_gene 108408 109657 . - . ID=Physo141698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020021;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 108408 109657 . - . ID=Physo141698;Parent=Physo141698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 108408 109563 . - 0 ID=Physo141698;Parent=Physo141698;rank=2 scaffold_102 . exon 108408 109563 . - . ID=Physo141698.2;Parent=Physo141698;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 109602 109657 . - 0 ID=Physo141698;Parent=Physo141698;rank=1 scaffold_102 . exon 109602 109657 . - . ID=Physo141698.1;Parent=Physo141698;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . repeat_region 116955 116974 . ? . description=trf scaffold_102 . repeat_region 117618 117630 . ? . description=dust scaffold_102 . repeat_region 121895 121903 . ? . description=dust scaffold_102 ensembl protein_coding_gene 124459 126741 . - . ID=Physo141699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020022;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 124459 126741 . - . ID=Physo141699;Parent=Physo141699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 124459 125479 . - 0 ID=Physo141699;Parent=Physo141699;rank=2 scaffold_102 . exon 124459 125479 . - . ID=Physo141699.2;Parent=Physo141699;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 125672 126741 . - 0 ID=Physo141699;Parent=Physo141699;rank=1 scaffold_102 . exon 125672 126741 . - . ID=Physo141699.1;Parent=Physo141699;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 ensembl protein_coding_gene 129250 131204 . - . ID=Physo141700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020023;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 129250 131204 . - . ID=Physo141700;Parent=Physo141700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 129250 130698 . - 0 ID=Physo141700;Parent=Physo141700;rank=3 scaffold_102 . exon 129250 130698 . - . ID=Physo141700.3;Parent=Physo141700;constitutive=1;rank=3 scaffold_102 . CDS 130779 131016 . - 0 ID=Physo141700;Parent=Physo141700;rank=2 scaffold_102 . exon 130779 131016 . - . ID=Physo141700.2;Parent=Physo141700;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 131137 131204 . - 0 ID=Physo141700;Parent=Physo141700;rank=1 scaffold_102 . exon 131137 131204 . - . ID=Physo141700.1;Parent=Physo141700;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 ensembl protein_coding_gene 131991 133511 . + . ID=Physo141701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020024;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 131991 133511 . + . ID=Physo141701;Parent=Physo141701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 131991 132032 . + 0 ID=Physo141701;Parent=Physo141701;rank=1 scaffold_102 . exon 131991 132032 . + . ID=Physo141701.1;Parent=Physo141701;constitutive=1;rank=1 scaffold_102 . CDS 132053 132856 . + 0 ID=Physo141701;Parent=Physo141701;rank=2 scaffold_102 . exon 132053 132856 . + . ID=Physo141701.2;Parent=Physo141701;constitutive=1;rank=2 scaffold_102 . CDS 132917 133030 . + 0 ID=Physo141701;Parent=Physo141701;rank=3 scaffold_102 . exon 132917 133030 . + . ID=Physo141701.3;Parent=Physo141701;constitutive=1;rank=3 scaffold_102 . CDS 133070 133357 . + 0 ID=Physo141701;Parent=Physo141701;rank=4 scaffold_102 . exon 133070 133357 . + . ID=Physo141701.4;Parent=Physo141701;constitutive=1;rank=4 scaffold_102 . CDS 133380 133511 . + 0 ID=Physo141701;Parent=Physo141701;rank=5 scaffold_102 . exon 133380 133511 . + . ID=Physo141701.5;Parent=Physo141701;constitutive=1;rank=5 scaffold_102 ensembl protein_coding_gene 134267 136003 . - . ID=Physo141702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020025;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 134267 136003 . - . ID=Physo141702;Parent=Physo141702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 134267 136003 . - 0 ID=Physo141702;Parent=Physo141702;rank=1 scaffold_102 . exon 134267 136003 . - . ID=Physo141702.1;Parent=Physo141702;constitutive=1;rank=1 scaffold_102 . biological_region 136400 136400 0.999 - . logic_name=eponine scaffold_102 . repeat_region 137040 137078 . ? . description=trf scaffold_102 . repeat_region 137313 137323 . ? . description=dust scaffold_102 . repeat_region 137400 137407 . ? . description=dust scaffold_102 . biological_region 137426 137436 0.999 + . logic_name=eponine scaffold_102 . biological_region 137427 137428 0.999 - . logic_name=eponine scaffold_102 . biological_region 137481 137487 0.999 - . logic_name=eponine scaffold_102 . biological_region 138375 138378 0.999 + . logic_name=eponine scaffold_102 . repeat_region 140269 140276 . ? . description=dust scaffold_102 . biological_region 142623 142624 0.999 - . logic_name=eponine scaffold_102 . biological_region 143277 143278 0.999 - . logic_name=eponine scaffold_102 . repeat_region 145082 145141 . ? . description=trf scaffold_102 . biological_region 145962 145966 0.999 + . logic_name=eponine scaffold_102 ensembl protein_coding_gene 138109 139724 . + . ID=Physo141703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020026;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 138109 139724 . + . ID=Physo141703;Parent=Physo141703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 138109 138482 . + 0 ID=Physo141703;Parent=Physo141703;rank=1 scaffold_102 . exon 138109 138482 . + . ID=Physo141703.1;Parent=Physo141703;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . CDS 138617 139724 . + 0 ID=Physo141703;Parent=Physo141703;rank=2 scaffold_102 . exon 138617 139724 . + . ID=Physo141703.2;Parent=Physo141703;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 ensembl protein_coding_gene 140673 142301 . + . ID=Physo141704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020027;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 140673 142301 . + . ID=Physo141704;Parent=Physo141704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 140673 142301 . + 0 ID=Physo141704;Parent=Physo141704;rank=1 scaffold_102 . exon 140673 142301 . + . ID=Physo141704.1;Parent=Physo141704;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 150474 151241 . + . ID=Physo109417;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1020005;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 150474 151241 . + . ID=Physo109417;Parent=Physo109417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 150474 151241 . + 0 ID=Physo109417;Parent=Physo109417;rank=1 scaffold_102 . exon 150474 151241 . + . ID=Physo109417.1;Parent=Physo109417;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 150043 150246 . + . ID=Physo122241;biotype=protein_coding;external_name=estExt_Genewise1.C_1020041;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 150043 150246 . + . ID=Physo122241;Parent=Physo122241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 150043 150246 . + . ID=Physo122241.1;Parent=Physo122241;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_102 . CDS 150044 150244 . + 0 ID=Physo122241;Parent=Physo122241;rank=1 scaffold_102 ensembl protein_coding_gene 146449 147637 . + . ID=Physo141705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020028;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 146449 147637 . + . ID=Physo141705;Parent=Physo141705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 146449 146551 . + 0 ID=Physo141705;Parent=Physo141705;rank=1 scaffold_102 . exon 146449 146551 . + . ID=Physo141705.1;Parent=Physo141705;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 146822 147540 . + 0 ID=Physo141705;Parent=Physo141705;rank=2 scaffold_102 . exon 146822 147540 . + . ID=Physo141705.2;Parent=Physo141705;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 147593 147637 . + 0 ID=Physo141705;Parent=Physo141705;rank=3 scaffold_102 . exon 147593 147637 . + . ID=Physo141705.3;Parent=Physo141705;constitutive=1;rank=3 scaffold_102 ensembl protein_coding_gene 155026 156204 . + . ID=Physo141707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020030;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 155026 156204 . + . ID=Physo141707;Parent=Physo141707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 155026 156204 . + 0 ID=Physo141707;Parent=Physo141707;rank=1 scaffold_102 . exon 155026 156204 . + . ID=Physo141707.1;Parent=Physo141707;constitutive=1;rank=1 scaffold_102 . repeat_region 156869 156877 . ? . description=dust scaffold_102 . repeat_region 159313 159320 . ? . description=dust scaffold_102 . repeat_region 162096 162103 . ? . description=dust scaffold_102 . repeat_region 162363 162371 . ? . description=dust scaffold_102 ensembl protein_coding_gene 156943 157525 . - . ID=Physo109418;biotype=protein_coding;description=PsAvh110Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84XU0];external_name=estExt_fgenesh1_pm.C_1020006;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 156943 157525 . - . ID=Physo109418;Parent=Physo109418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 156943 157518 . - 0 ID=Physo109418;Parent=Physo109418;rank=1 scaffold_102 . exon 156943 157525 . - . ID=Physo109418.1;Parent=Physo109418;constitutive=1;ensembl_phase=-1;rank=1 scaffold_102 ensembl protein_coding_gene 159713 161056 . - . ID=Physo141709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020032;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 159713 161056 . - . ID=Physo141709;Parent=Physo141709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 159713 161056 . - 0 ID=Physo141709;Parent=Physo141709;rank=1 scaffold_102 . exon 159713 161056 . - . ID=Physo141709.1;Parent=Physo141709;constitutive=1;rank=1 scaffold_102 . repeat_region 166251 166427 . ? . description=trf scaffold_102 . biological_region 166310 166312 0.999 + . logic_name=eponine scaffold_102 . biological_region 166688 166691 0.999 + . logic_name=eponine scaffold_102 . biological_region 166716 166716 0.999 - . logic_name=eponine scaffold_102 . biological_region 166969 166971 0.999 + . logic_name=eponine scaffold_102 . repeat_region 167288 169605 . + . description=GypsyPi-1c_I-int scaffold_102 . biological_region 168804 168805 0.999 - . logic_name=eponine scaffold_102 . biological_region 170771 170775 0.999 - . logic_name=eponine scaffold_102 . biological_region 171299 171306 0.999 + . logic_name=eponine scaffold_102 . biological_region 171329 171330 0.999 + . logic_name=eponine scaffold_102 . biological_region 171418 171420 0.999 - . logic_name=eponine scaffold_102 ensembl protein_coding_gene 165930 169919 . + . ID=Physo141710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020033;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 165930 169919 . + . ID=Physo141710;Parent=Physo141710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 165930 167903 . + 0 ID=Physo141710;Parent=Physo141710;rank=1 scaffold_102 . exon 165930 167903 . + . ID=Physo141710.1;Parent=Physo141710;constitutive=1;rank=1 scaffold_102 . CDS 167938 168192 . + 0 ID=Physo141710;Parent=Physo141710;rank=2 scaffold_102 . exon 167938 168192 . + . ID=Physo141710.2;Parent=Physo141710;constitutive=1;rank=2 scaffold_102 . CDS 168216 168293 . + 0 ID=Physo141710;Parent=Physo141710;rank=3 scaffold_102 . exon 168216 168293 . + . ID=Physo141710.3;Parent=Physo141710;constitutive=1;rank=3 scaffold_102 . CDS 168426 169049 . + 0 ID=Physo141710;Parent=Physo141710;rank=4 scaffold_102 . exon 168426 169049 . + . ID=Physo141710.4;Parent=Physo141710;constitutive=1;rank=4 scaffold_102 . CDS 169136 169872 . + 0 ID=Physo141710;Parent=Physo141710;rank=5 scaffold_102 . exon 169136 169872 . + . ID=Physo141710.5;Parent=Physo141710;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_102 . CDS 169913 169919 . + 0 ID=Physo141710;Parent=Physo141710;rank=6 scaffold_102 . exon 169913 169919 . + . ID=Physo141710.6;Parent=Physo141710;constitutive=1;ensembl_phase=2;rank=6 scaffold_102 ensembl protein_coding_gene 170172 171665 . - . ID=Physo141711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020034;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 170172 171665 . - . ID=Physo141711;Parent=Physo141711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 170172 170522 . - 0 ID=Physo141711;Parent=Physo141711;rank=3 scaffold_102 . exon 170172 170522 . - . ID=Physo141711.3;Parent=Physo141711;constitutive=1;rank=3 scaffold_102 . CDS 170661 170994 . - 0 ID=Physo141711;Parent=Physo141711;rank=2 scaffold_102 . exon 170661 170994 . - . ID=Physo141711.2;Parent=Physo141711;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 171169 171665 . - 0 ID=Physo141711;Parent=Physo141711;rank=1 scaffold_102 . exon 171169 171665 . - . ID=Physo141711.1;Parent=Physo141711;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . repeat_region 176480 176487 . ? . description=dust scaffold_102 . repeat_region 184753 184764 . ? . description=dust scaffold_102 ensembl protein_coding_gene 175487 175978 . + . ID=Physo122243;biotype=protein_coding;external_name=estExt_Genewise1.C_1020043;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 175487 175978 . + . ID=Physo122243;Parent=Physo122243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 175487 175627 . + . ID=Physo122243.1;Parent=Physo122243;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_102 . exon 175673 175978 . + . ID=Physo122243.2;Parent=Physo122243;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_102 . CDS 175839 175976 . + 0 ID=Physo122243;Parent=Physo122243;rank=1 scaffold_102 ensembl protein_coding_gene 179025 182117 . + . ID=Physo122247;biotype=protein_coding;external_name=estExt_Genewise1.C_1020047;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 179025 182117 . + . ID=Physo122247;Parent=Physo122247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 179025 180584 . + . ID=Physo122247.1;Parent=Physo122247;constitutive=1;ensembl_phase=-1;rank=1 scaffold_102 . CDS 179034 180584 . + 0 ID=Physo122247;Parent=Physo122247;rank=1 scaffold_102 . CDS 180621 181013 . + 0 ID=Physo122247;Parent=Physo122247;rank=2 scaffold_102 . exon 180621 181013 . + . ID=Physo122247.2;Parent=Physo122247;constitutive=1;rank=2 scaffold_102 . CDS 181104 182117 . + 0 ID=Physo122247;Parent=Physo122247;rank=3 scaffold_102 . exon 181104 182117 . + . ID=Physo122247.3;Parent=Physo122247;constitutive=1;rank=3 scaffold_102 ensembl protein_coding_gene 183246 183805 . - . ID=Physo122249;biotype=protein_coding;external_name=estExt_Genewise1.C_1020049;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 183246 183805 . - . ID=Physo122249;Parent=Physo122249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 183246 183635 . - 0 ID=Physo122249;Parent=Physo122249;rank=1 scaffold_102 . exon 183246 183805 . - . ID=Physo122249.1;Parent=Physo122249;constitutive=1;ensembl_phase=-1;rank=1 scaffold_102 ensembl protein_coding_gene 177174 178844 . - . ID=Physo141712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020035;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 177174 178844 . - . ID=Physo141712;Parent=Physo141712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 177174 178844 . - 0 ID=Physo141712;Parent=Physo141712;rank=1 scaffold_102 . exon 177174 178844 . - . ID=Physo141712.1;Parent=Physo141712;constitutive=1;rank=1 scaffold_102 . biological_region 185110 185114 0.999 + . logic_name=eponine scaffold_102 . biological_region 188322 188329 0.999 - . logic_name=eponine scaffold_102 . biological_region 188379 188385 0.999 + . logic_name=eponine scaffold_102 . biological_region 188567 188569 0.999 + . logic_name=eponine scaffold_102 ensembl protein_coding_gene 193067 193978 . - . ID=Physo141714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020037;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 193067 193978 . - . ID=Physo141714;Parent=Physo141714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 193067 193454 . - 0 ID=Physo141714;Parent=Physo141714;rank=3 scaffold_102 . exon 193067 193454 . - . ID=Physo141714.3;Parent=Physo141714;constitutive=1;ensembl_phase=2;rank=3 scaffold_102 . CDS 193566 193642 . - 0 ID=Physo141714;Parent=Physo141714;rank=2 scaffold_102 . exon 193566 193642 . - . ID=Physo141714.2;Parent=Physo141714;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_102 . CDS 193706 193717 . - 0 ID=Physo141714;Parent=Physo141714;rank=1 scaffold_102 . exon 193706 193978 . - . ID=Physo141714.1;Parent=Physo141714;constitutive=1;ensembl_phase=-1;rank=1 scaffold_102 . repeat_region 195294 195335 . ? . description=trf scaffold_102 . repeat_region 195700 195724 . ? . description=dust scaffold_102 . repeat_region 197705 197712 . ? . description=dust scaffold_102 . repeat_region 200933 200964 . ? . description=trf scaffold_102 ensembl protein_coding_gene 201520 203216 . - . ID=Physo109419;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1020007;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 201520 203216 . - . ID=Physo109419;Parent=Physo109419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 201520 202860 . - 0 ID=Physo109419;Parent=Physo109419;rank=2 scaffold_102 . exon 201520 202860 . - . ID=Physo109419.2;Parent=Physo109419;constitutive=1;rank=2 scaffold_102 . CDS 203052 203216 . - 0 ID=Physo109419;Parent=Physo109419;rank=1 scaffold_102 . exon 203052 203216 . - . ID=Physo109419.1;Parent=Physo109419;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 199546 200510 . + . ID=Physo141715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020038;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 199546 200510 . + . ID=Physo141715;Parent=Physo141715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 199546 200476 . + 0 ID=Physo141715;Parent=Physo141715;rank=1 scaffold_102 . exon 199546 200476 . + . ID=Physo141715.1;Parent=Physo141715;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 200506 200510 . + 0 ID=Physo141715;Parent=Physo141715;rank=2 scaffold_102 . exon 200506 200510 . + . ID=Physo141715.2;Parent=Physo141715;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 ensembl protein_coding_gene 203769 210894 . - . ID=Physo141717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020040;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 203769 210894 . - . ID=Physo141717;Parent=Physo141717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 203769 204437 . - . ID=Physo141717.3;Parent=Physo141717;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_102 . CDS 203886 204437 . - 0 ID=Physo141717;Parent=Physo141717;rank=3 scaffold_102 . CDS 204772 204782 . - 0 ID=Physo141717;Parent=Physo141717;rank=2 scaffold_102 . CDS 210018 210894 . - 0 ID=Physo141717;Parent=Physo141717;rank=1 scaffold_102 . biological_region 204562 204563 0.999 + . logic_name=eponine scaffold_102 . biological_region 210623 210624 0.999 + . logic_name=eponine scaffold_102 . biological_region 210654 210656 0.999 - . logic_name=eponine scaffold_102 . biological_region 211308 211313 0.999 - . logic_name=eponine scaffold_102 . biological_region 211312 211313 0.999 + . logic_name=eponine scaffold_102 . biological_region 211540 211541 0.999 + . logic_name=eponine scaffold_102 . biological_region 213205 213207 0.999 + . logic_name=eponine scaffold_102 . biological_region 213336 213341 0.999 - . logic_name=eponine scaffold_102 . biological_region 213361 213361 0.999 - . logic_name=eponine scaffold_102 . biological_region 213540 213541 0.999 + . logic_name=eponine scaffold_102 . exon 204772 204782 . - . ID=Physo141717.2;Parent=Physo141717;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 . exon 210018 210894 . - . ID=Physo141717.1;Parent=Physo141717;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 ensembl protein_coding_gene 212827 213392 . + . ID=Physo158379;biotype=protein_coding;external_name=C_scaffold_102000004;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 212827 213392 . + . ID=Physo158379;Parent=Physo158379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 212827 213045 . + 0 ID=Physo158379;Parent=Physo158379;rank=1 scaffold_102 . exon 212827 213045 . + . ID=Physo158379.1;Parent=Physo158379;constitutive=1;rank=1 scaffold_102 . CDS 213076 213201 . + 0 ID=Physo158379;Parent=Physo158379;rank=2 scaffold_102 . exon 213076 213201 . + . ID=Physo158379.2;Parent=Physo158379;constitutive=1;rank=2 scaffold_102 . CDS 213228 213392 . + 0 ID=Physo158379;Parent=Physo158379;rank=3 scaffold_102 . exon 213228 213392 . + . ID=Physo158379.3;Parent=Physo158379;constitutive=1;rank=3 scaffold_102 . repeat_region 215007 215045 . ? . description=trf scaffold_102 . repeat_region 215326 215368 . ? . description=trf scaffold_102 . repeat_region 218368 218387 . ? . description=trf scaffold_102 . repeat_region 223486 223517 . ? . description=trf scaffold_102 ensembl protein_coding_gene 214659 215575 . + . ID=Physo141719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020042;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 214659 215575 . + . ID=Physo141719;Parent=Physo141719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 214659 214774 . + 0 ID=Physo141719;Parent=Physo141719;rank=1 scaffold_102 . exon 214659 214774 . + . ID=Physo141719.1;Parent=Physo141719;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 . CDS 214819 215575 . + 0 ID=Physo141719;Parent=Physo141719;rank=2 scaffold_102 . exon 214819 215575 . + . ID=Physo141719.2;Parent=Physo141719;constitutive=1;ensembl_phase=2;rank=2 scaffold_102 ensembl protein_coding_gene 217072 218502 . - . ID=Physo141720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020043;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 217072 218502 . - . ID=Physo141720;Parent=Physo141720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 217072 218502 . - 0 ID=Physo141720;Parent=Physo141720;rank=1 scaffold_102 . exon 217072 218502 . - . ID=Physo141720.1;Parent=Physo141720;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 219070 220405 . - . ID=Physo141721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020044;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 219070 220405 . - . ID=Physo141721;Parent=Physo141721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 219070 219306 . - 0 ID=Physo141721;Parent=Physo141721;rank=4 scaffold_102 . exon 219070 219306 . - . ID=Physo141721.4;Parent=Physo141721;constitutive=1;rank=4 scaffold_102 . CDS 219377 219384 . - 0 ID=Physo141721;Parent=Physo141721;rank=3 scaffold_102 . exon 219377 219384 . - . ID=Physo141721.3;Parent=Physo141721;constitutive=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 219481 220332 . - 0 ID=Physo141721;Parent=Physo141721;rank=2 scaffold_102 . exon 219481 220332 . - . ID=Physo141721.2;Parent=Physo141721;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 220387 220405 . - 0 ID=Physo141721;Parent=Physo141721;rank=1 scaffold_102 . exon 220387 220405 . - . ID=Physo141721.1;Parent=Physo141721;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . repeat_region 224645 226094 . ? . description=dust scaffold_102 . repeat_region 229681 229688 . ? . description=dust scaffold_102 . biological_region 230719 230721 0.999 + . logic_name=eponine scaffold_102 . biological_region 230953 230962 0.999 - . logic_name=eponine scaffold_102 . biological_region 230958 230959 0.999 + . logic_name=eponine scaffold_102 . biological_region 231058 231059 0.999 - . logic_name=eponine scaffold_102 . biological_region 231345 231347 0.999 + . logic_name=eponine scaffold_102 . biological_region 233196 233199 0.999 + . logic_name=eponine scaffold_102 . biological_region 233430 233439 0.999 - . logic_name=eponine scaffold_102 . biological_region 233435 233436 0.999 + . logic_name=eponine scaffold_102 . biological_region 233535 233536 0.999 - . logic_name=eponine scaffold_102 ensembl protein_coding_gene 229636 231285 . - . ID=Physo141722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020045;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 229636 231285 . - . ID=Physo141722;Parent=Physo141722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 229636 231285 . - . ID=Physo141722.1;Parent=Physo141722;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_102 . CDS 229774 231285 . - 0 ID=Physo141722;Parent=Physo141722;rank=1 scaffold_102 ensembl protein_coding_gene 232114 233762 . - . ID=Physo141723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020046;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 232114 233762 . - . ID=Physo141723;Parent=Physo141723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 232114 233762 . - . ID=Physo141723.1;Parent=Physo141723;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_102 . CDS 232251 233762 . - 0 ID=Physo141723;Parent=Physo141723;rank=1 scaffold_102 . repeat_region 233931 233974 . ? . description=trf scaffold_102 . repeat_region 233931 233974 . ? . description=trf scaffold_102 . repeat_region 233937 233973 . ? . description=trf scaffold_102 . repeat_region 236221 236260 . ? . description=trf scaffold_102 . repeat_region 237967 238093 . + . description=(CTCGG)n scaffold_102 . repeat_region 237968 238007 . ? . description=trf scaffold_102 . repeat_region 238638 238661 . ? . description=trf scaffold_102 . repeat_region 239454 239560 . ? . description=trf scaffold_102 . repeat_region 239458 239571 . ? . description=trf scaffold_102 . repeat_region 239463 239560 . ? . description=trf scaffold_102 . repeat_region 240722 240741 . ? . description=trf scaffold_102 ensembl protein_coding_gene 240112 242560 . + . ID=Physo141725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020048;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 240112 242560 . + . ID=Physo141725;Parent=Physo141725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 240112 240463 . + 0 ID=Physo141725;Parent=Physo141725;rank=1 scaffold_102 . exon 240112 240463 . + . ID=Physo141725.1;Parent=Physo141725;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 240546 242560 . + 0 ID=Physo141725;Parent=Physo141725;rank=2 scaffold_102 . exon 240546 242560 . + . ID=Physo141725.2;Parent=Physo141725;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 ensembl protein_coding_gene 242738 243227 . - . ID=Physo141726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020049;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 242738 243227 . - . ID=Physo141726;Parent=Physo141726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 242738 242797 . - 0 ID=Physo141726;Parent=Physo141726;rank=2 scaffold_102 . exon 242738 242797 . - . ID=Physo141726.2;Parent=Physo141726;constitutive=1;rank=2 scaffold_102 . CDS 242874 243227 . - 0 ID=Physo141726;Parent=Physo141726;rank=1 scaffold_102 . exon 242874 243227 . - . ID=Physo141726.1;Parent=Physo141726;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 238182 239693 . + . ID=Physo158380;biotype=protein_coding;external_name=C_scaffold_102000005;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 238182 239693 . + . ID=Physo158380;Parent=Physo158380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 238182 239693 . + 0 ID=Physo158380;Parent=Physo158380;rank=1 scaffold_102 . exon 238182 239693 . + . ID=Physo158380.1;Parent=Physo158380;constitutive=1;rank=1 scaffold_102 . biological_region 244706 244712 0.999 + . logic_name=eponine scaffold_102 . repeat_region 245755 245789 . ? . description=dust scaffold_102 ensembl protein_coding_gene 251924 252712 . - . ID=Physo109420;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1020008;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 251924 252712 . - . ID=Physo109420;Parent=Physo109420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 251924 252006 . - 0 ID=Physo109420;Parent=Physo109420;rank=4 scaffold_102 . exon 251924 252006 . - . ID=Physo109420.4;Parent=Physo109420;constitutive=1;ensembl_phase=1;rank=4 scaffold_102 . CDS 252078 252350 . - 0 ID=Physo109420;Parent=Physo109420;rank=3 scaffold_102 . exon 252078 252350 . - . ID=Physo109420.3;Parent=Physo109420;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 252459 252549 . - 0 ID=Physo109420;Parent=Physo109420;rank=2 scaffold_102 . exon 252459 252549 . - . ID=Physo109420.2;Parent=Physo109420;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_102 . CDS 252635 252712 . - 0 ID=Physo109420;Parent=Physo109420;rank=1 scaffold_102 . exon 252635 252712 . - . ID=Physo109420.1;Parent=Physo109420;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 243713 245319 . - . ID=Physo141727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020050;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 243713 245319 . - . ID=Physo141727;Parent=Physo141727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 243713 243828 . - 0 ID=Physo141727;Parent=Physo141727;rank=3 scaffold_102 . exon 243713 243828 . - . ID=Physo141727.3;Parent=Physo141727;constitutive=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 243894 245157 . - 0 ID=Physo141727;Parent=Physo141727;rank=2 scaffold_102 . exon 243894 245157 . - . ID=Physo141727.2;Parent=Physo141727;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_102 . CDS 245302 245319 . - 0 ID=Physo141727;Parent=Physo141727;rank=1 scaffold_102 . exon 245302 245319 . - . ID=Physo141727.1;Parent=Physo141727;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 245469 247361 . - . ID=Physo141728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020051;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 245469 247361 . - . ID=Physo141728;Parent=Physo141728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 245469 247361 . - 0 ID=Physo141728;Parent=Physo141728;rank=1 scaffold_102 . exon 245469 247361 . - . ID=Physo141728.1;Parent=Physo141728;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 247832 249197 . + . ID=Physo141729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020052;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 247832 249197 . + . ID=Physo141729;Parent=Physo141729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 247832 248192 . + 0 ID=Physo141729;Parent=Physo141729;rank=1 scaffold_102 . exon 247832 248192 . + . ID=Physo141729.1;Parent=Physo141729;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 248530 249197 . + 0 ID=Physo141729;Parent=Physo141729;rank=2 scaffold_102 . exon 248530 249197 . + . ID=Physo141729.2;Parent=Physo141729;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 ensembl protein_coding_gene 250111 251559 . + . ID=Physo141730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020053;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 250111 251559 . + . ID=Physo141730;Parent=Physo141730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 250111 251559 . + 0 ID=Physo141730;Parent=Physo141730;rank=1 scaffold_102 . exon 250111 251559 . + . ID=Physo141730.1;Parent=Physo141730;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 252860 253267 . + . ID=Physo141732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020055;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 252860 253267 . + . ID=Physo141732;Parent=Physo141732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 252860 253267 . + 0 ID=Physo141732;Parent=Physo141732;rank=1 scaffold_102 . exon 252860 253267 . + . ID=Physo141732.1;Parent=Physo141732;constitutive=1;rank=1 scaffold_102 . repeat_region 255530 255559 . ? . description=trf scaffold_102 ensembl protein_coding_gene 254196 257616 . - . ID=Physo141734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020057;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 254196 257616 . - . ID=Physo141734;Parent=Physo141734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . exon 254196 254914 . - . ID=Physo141734.4;Parent=Physo141734;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_102 . CDS 254374 254914 . - 0 ID=Physo141734;Parent=Physo141734;rank=4 scaffold_102 . CDS 255055 255811 . - 0 ID=Physo141734;Parent=Physo141734;rank=3 scaffold_102 . exon 255055 255811 . - . ID=Physo141734.3;Parent=Physo141734;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_102 . CDS 256352 256539 . - 0 ID=Physo141734;Parent=Physo141734;rank=2 scaffold_102 . exon 256352 256539 . - . ID=Physo141734.2;Parent=Physo141734;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_102 . CDS 256643 257616 . - 0 ID=Physo141734;Parent=Physo141734;rank=1 scaffold_102 . exon 256643 257616 . - . ID=Physo141734.1;Parent=Physo141734;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_102 ensembl protein_coding_gene 253320 253935 . - . ID=Physo158385;biotype=protein_coding;external_name=C_scaffold_102000010;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 253320 253935 . - . ID=Physo158385;Parent=Physo158385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 253320 253448 . - 0 ID=Physo158385;Parent=Physo158385;rank=4 scaffold_102 . exon 253320 253448 . - . ID=Physo158385.4;Parent=Physo158385;constitutive=1;rank=4 scaffold_102 . CDS 253512 253658 . - 0 ID=Physo158385;Parent=Physo158385;rank=3 scaffold_102 . exon 253512 253658 . - . ID=Physo158385.3;Parent=Physo158385;constitutive=1;rank=3 scaffold_102 . CDS 253729 253806 . - 0 ID=Physo158385;Parent=Physo158385;rank=2 scaffold_102 . exon 253729 253806 . - . ID=Physo158385.2;Parent=Physo158385;constitutive=1;rank=2 scaffold_102 . CDS 253888 253935 . - 0 ID=Physo158385;Parent=Physo158385;rank=1 scaffold_102 . exon 253888 253935 . - . ID=Physo158385.1;Parent=Physo158385;constitutive=1;rank=1 scaffold_102 . repeat_region 257686 267202 . ? . description=dust scaffold_102 . repeat_region 268861 272263 . ? . description=dust scaffold_102 . repeat_region 273946 273966 . ? . description=trf scaffold_102 . biological_region 273962 273963 0.999 - . logic_name=eponine scaffold_102 . biological_region 274442 274443 0.999 + . logic_name=eponine scaffold_102 . repeat_region 276509 276538 . ? . description=trf scaffold_102 . biological_region 276696 276698 0.999 - . logic_name=eponine scaffold_102 . biological_region 276941 276942 0.999 - . logic_name=eponine scaffold_102 . biological_region 279038 279042 0.999 + . logic_name=eponine scaffold_102 . biological_region 279131 279134 0.999 - . logic_name=eponine scaffold_102 . biological_region 279186 279191 0.999 + . logic_name=eponine scaffold_102 . biological_region 279212 279219 0.999 - . logic_name=eponine scaffold_102 ensembl protein_coding_gene 280836 282032 . - . ID=Physo109421;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1020009;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 280836 282032 . - . ID=Physo109421;Parent=Physo109421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 280836 282032 . - 0 ID=Physo109421;Parent=Physo109421;rank=1 scaffold_102 . exon 280836 282032 . - . ID=Physo109421.1;Parent=Physo109421;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 273002 273274 . - . ID=Physo158387;biotype=protein_coding;external_name=C_scaffold_102000012;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 273002 273274 . - . ID=Physo158387;Parent=Physo158387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 273002 273274 . - 0 ID=Physo158387;Parent=Physo158387;rank=1 scaffold_102 . exon 273002 273274 . - . ID=Physo158387.1;Parent=Physo158387;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 275032 278693 . + . ID=Physo158388;biotype=protein_coding;external_name=C_scaffold_102000013;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 275032 278693 . + . ID=Physo158388;Parent=Physo158388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 275032 277047 . + 0 ID=Physo158388;Parent=Physo158388;rank=1 scaffold_102 . exon 275032 277047 . + . ID=Physo158388.1;Parent=Physo158388;constitutive=1;rank=1 scaffold_102 . CDS 277370 277757 . + 0 ID=Physo158388;Parent=Physo158388;rank=2 scaffold_102 . exon 277370 277757 . + . ID=Physo158388.2;Parent=Physo158388;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_102 . CDS 277842 278128 . + 0 ID=Physo158388;Parent=Physo158388;rank=3 scaffold_102 . exon 277842 278128 . + . ID=Physo158388.3;Parent=Physo158388;constitutive=1;ensembl_phase=1;rank=3 scaffold_102 . CDS 278199 278693 . + 0 ID=Physo158388;Parent=Physo158388;rank=4 scaffold_102 . exon 278199 278693 . + . ID=Physo158388.4;Parent=Physo158388;constitutive=1;rank=4 scaffold_102 ensembl protein_coding_gene 279055 280313 . + . ID=Physo158389;biotype=protein_coding;external_name=C_scaffold_102000014;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 279055 280313 . + . ID=Physo158389;Parent=Physo158389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 279055 279376 . + 0 ID=Physo158389;Parent=Physo158389;rank=1 scaffold_102 . exon 279055 279376 . + . ID=Physo158389.1;Parent=Physo158389;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 . CDS 279398 279757 . + 0 ID=Physo158389;Parent=Physo158389;rank=2 scaffold_102 . exon 279398 279757 . + . ID=Physo158389.2;Parent=Physo158389;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 279838 280313 . + 0 ID=Physo158389;Parent=Physo158389;rank=3 scaffold_102 . exon 279838 280313 . + . ID=Physo158389.3;Parent=Physo158389;constitutive=1;ensembl_phase=1;rank=3 scaffold_102 . repeat_region 288440 288447 . ? . description=dust scaffold_102 ensembl protein_coding_gene 284783 286369 . - . ID=Physo141738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020061;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 284783 286369 . - . ID=Physo141738;Parent=Physo141738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 284783 286369 . - 0 ID=Physo141738;Parent=Physo141738;rank=1 scaffold_102 . exon 284783 286369 . - . ID=Physo141738.1;Parent=Physo141738;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 286845 287623 . - . ID=Physo141739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020062;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 286845 287623 . - . ID=Physo141739;Parent=Physo141739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 286845 287494 . - 0 ID=Physo141739;Parent=Physo141739;rank=2 scaffold_102 . exon 286845 287494 . - . ID=Physo141739.2;Parent=Physo141739;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 287557 287623 . - 0 ID=Physo141739;Parent=Physo141739;rank=1 scaffold_102 . exon 287557 287623 . - . ID=Physo141739.1;Parent=Physo141739;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 ensembl protein_coding_gene 288475 289434 . - . ID=Physo141740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020063;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 288475 289434 . - . ID=Physo141740;Parent=Physo141740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 288475 289434 . - 0 ID=Physo141740;Parent=Physo141740;rank=1 scaffold_102 . exon 288475 289434 . - . ID=Physo141740.1;Parent=Physo141740;constitutive=1;rank=1 scaffold_102 ensembl protein_coding_gene 290763 292352 . - . ID=Physo141741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020064;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 290763 292352 . - . ID=Physo141741;Parent=Physo141741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 290763 291470 . - 0 ID=Physo141741;Parent=Physo141741;rank=2 scaffold_102 . exon 290763 291470 . - . ID=Physo141741.2;Parent=Physo141741;constitutive=1;rank=2 scaffold_102 . CDS 291873 292352 . - 0 ID=Physo141741;Parent=Physo141741;rank=1 scaffold_102 . exon 291873 292352 . - . ID=Physo141741.1;Parent=Physo141741;constitutive=1;rank=1 scaffold_102 . biological_region 293294 293304 0.999 + . logic_name=eponine scaffold_102 . biological_region 293350 293354 0.999 - . logic_name=eponine scaffold_102 . repeat_region 293997 294039 . ? . description=trf scaffold_102 . biological_region 295858 295859 0.999 + . logic_name=eponine scaffold_102 . repeat_region 298479 298575 . ? . description=trf scaffold_102 . biological_region 298726 298726 0.999 - . logic_name=eponine scaffold_102 . biological_region 299314 299315 0.999 - . logic_name=eponine scaffold_102 ensembl protein_coding_gene 295791 297848 . - . ID=Physo122202;biotype=protein_coding;external_name=estExt_Genewise1.C_1020002;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 295791 297848 . - . ID=Physo122202;Parent=Physo122202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 295791 296153 . - 0 ID=Physo122202;Parent=Physo122202;rank=2 scaffold_102 . exon 295791 296153 . - . ID=Physo122202.2;Parent=Physo122202;constitutive=1;rank=2 scaffold_102 . CDS 296217 297821 . - 0 ID=Physo122202;Parent=Physo122202;rank=1 scaffold_102 . exon 296217 297848 . - . ID=Physo122202.1;Parent=Physo122202;constitutive=1;ensembl_phase=-1;rank=1 scaffold_102 ensembl protein_coding_gene 293580 294280 . + . ID=Physo141742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020065;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 293580 294280 . + . ID=Physo141742;Parent=Physo141742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 293580 293684 . + 0 ID=Physo141742;Parent=Physo141742;rank=1 scaffold_102 . exon 293580 293684 . + . ID=Physo141742.1;Parent=Physo141742;constitutive=1;rank=1 scaffold_102 . CDS 293733 293864 . + 0 ID=Physo141742;Parent=Physo141742;rank=2 scaffold_102 . exon 293733 293864 . + . ID=Physo141742.2;Parent=Physo141742;constitutive=1;rank=2 scaffold_102 . CDS 293993 294245 . + 0 ID=Physo141742;Parent=Physo141742;rank=3 scaffold_102 . exon 293993 294245 . + . ID=Physo141742.3;Parent=Physo141742;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_102 . CDS 294266 294279 . + 0 ID=Physo141742;Parent=Physo141742;rank=4 scaffold_102 . exon 294266 294280 . + . ID=Physo141742.4;Parent=Physo141742;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_102 ensembl protein_coding_gene 298395 299988 . - . ID=Physo141744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020067;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 298395 299988 . - . ID=Physo141744;Parent=Physo141744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 298395 299449 . - 0 ID=Physo141744;Parent=Physo141744;rank=2 scaffold_102 . exon 298395 299449 . - . ID=Physo141744.2;Parent=Physo141744;constitutive=1;ensembl_phase=1;rank=2 scaffold_102 . CDS 299550 299988 . - 0 ID=Physo141744;Parent=Physo141744;rank=1 scaffold_102 . exon 299550 299988 . - . ID=Physo141744.1;Parent=Physo141744;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_102 ensembl protein_coding_gene 300375 301661 . - . ID=Physo141745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1020068;logic_name=jgi_physo1_1 scaffold_102 ensembl transcript 300375 301661 . - . ID=Physo141745;Parent=Physo141745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_102 . CDS 300375 301661 . - 0 ID=Physo141745;Parent=Physo141745;rank=1 scaffold_102 . exon 300375 301661 . - . ID=Physo141745.1;Parent=Physo141745;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_101 1 302571 scaffold_101 . repeat_region 96 148 . ? . description=trf scaffold_101 . repeat_region 96 148 . ? . description=trf scaffold_101 . biological_region 2320 2324 0.999 + . logic_name=eponine scaffold_101 . biological_region 3359 3360 0.999 - . logic_name=eponine scaffold_101 . repeat_region 4483 4533 . ? . description=trf scaffold_101 . repeat_region 4483 4535 . ? . description=trf scaffold_101 . repeat_region 4575 4605 . ? . description=trf scaffold_101 . repeat_region 4610 4647 . ? . description=trf scaffold_101 ensembl protein_coding_gene 320 4336 . - . ID=Physo141588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010001;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 320 4336 . - . ID=Physo141588;Parent=Physo141588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 320 4336 . - 0 ID=Physo141588;Parent=Physo141588;rank=1 scaffold_101 . exon 320 4336 . - . ID=Physo141588.1;Parent=Physo141588;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 5196 6539 . + . ID=Physo141589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010002;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 5196 6539 . + . ID=Physo141589;Parent=Physo141589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 5196 5471 . + 0 ID=Physo141589;Parent=Physo141589;rank=1 scaffold_101 . exon 5196 5471 . + . ID=Physo141589.1;Parent=Physo141589;constitutive=1;rank=1 scaffold_101 . CDS 5493 5723 . + 0 ID=Physo141589;Parent=Physo141589;rank=2 scaffold_101 . exon 5493 5723 . + . ID=Physo141589.2;Parent=Physo141589;constitutive=1;rank=2 scaffold_101 . CDS 5796 6539 . + 0 ID=Physo141589;Parent=Physo141589;rank=3 scaffold_101 . exon 5796 6539 . + . ID=Physo141589.3;Parent=Physo141589;constitutive=1;rank=3 scaffold_101 . repeat_region 19278 19753 . ? . description=dust scaffold_101 ensembl protein_coding_gene 12966 14803 . + . ID=Physo141590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010003;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 12966 14803 . + . ID=Physo141590;Parent=Physo141590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 12966 13184 . + 0 ID=Physo141590;Parent=Physo141590;rank=1 scaffold_101 . exon 12966 13184 . + . ID=Physo141590.1;Parent=Physo141590;constitutive=1;rank=1 scaffold_101 . CDS 13496 14093 . + 0 ID=Physo141590;Parent=Physo141590;rank=2 scaffold_101 . exon 13496 14093 . + . ID=Physo141590.2;Parent=Physo141590;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_101 . CDS 14160 14803 . + 0 ID=Physo141590;Parent=Physo141590;rank=3 scaffold_101 . exon 14160 14803 . + . ID=Physo141590.3;Parent=Physo141590;constitutive=1;ensembl_phase=1;rank=3 scaffold_101 ensembl protein_coding_gene 15483 16190 . + . ID=Physo141591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010004;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 15483 16190 . + . ID=Physo141591;Parent=Physo141591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 15483 16190 . + 0 ID=Physo141591;Parent=Physo141591;rank=1 scaffold_101 . exon 15483 16190 . + . ID=Physo141591.1;Parent=Physo141591;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 18974 22729 . + . ID=Physo141592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010005;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 18974 22729 . + . ID=Physo141592;Parent=Physo141592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 18974 19271 . + 0 ID=Physo141592;Parent=Physo141592;rank=1 scaffold_101 . exon 18974 19271 . + . ID=Physo141592.1;Parent=Physo141592;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 . CDS 19833 20812 . + 0 ID=Physo141592;Parent=Physo141592;rank=2 scaffold_101 . CDS 20955 21775 . + 0 ID=Physo141592;Parent=Physo141592;rank=3 scaffold_101 . CDS 21796 22729 . + 0 ID=Physo141592;Parent=Physo141592;rank=4 scaffold_101 . biological_region 21032 21034 0.999 - . logic_name=eponine scaffold_101 . exon 19833 20812 . + . ID=Physo141592.2;Parent=Physo141592;constitutive=1;ensembl_phase=1;rank=2 scaffold_101 . exon 20955 21775 . + . ID=Physo141592.3;Parent=Physo141592;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_101 . exon 21796 22729 . + . ID=Physo141592.4;Parent=Physo141592;constitutive=1;ensembl_phase=2;rank=4 scaffold_101 ensembl protein_coding_gene 25024 29789 . - . ID=Physo141593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010006;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 25024 29789 . - . ID=Physo141593;Parent=Physo141593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 25024 25957 . - 0 ID=Physo141593;Parent=Physo141593;rank=6 scaffold_101 . exon 25024 25957 . - . ID=Physo141593.6;Parent=Physo141593;constitutive=1;ensembl_phase=2;rank=6 scaffold_101 . CDS 25986 26458 . - 0 ID=Physo141593;Parent=Physo141593;rank=5 scaffold_101 . exon 25986 26458 . - . ID=Physo141593.5;Parent=Physo141593;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_101 . CDS 26701 27404 . - 0 ID=Physo141593;Parent=Physo141593;rank=4 scaffold_101 . exon 26701 27404 . - . ID=Physo141593.4;Parent=Physo141593;constitutive=1;ensembl_phase=1;rank=4 scaffold_101 . CDS 27443 27545 . - 0 ID=Physo141593;Parent=Physo141593;rank=3 scaffold_101 . exon 27443 27545 . - . ID=Physo141593.3;Parent=Physo141593;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_101 . CDS 27673 29099 . - 0 ID=Physo141593;Parent=Physo141593;rank=2 scaffold_101 . exon 27673 29099 . - . ID=Physo141593.2;Parent=Physo141593;constitutive=1;ensembl_phase=1;rank=2 scaffold_101 . CDS 29138 29789 . - 0 ID=Physo141593;Parent=Physo141593;rank=1 scaffold_101 . exon 29138 29789 . - . ID=Physo141593.1;Parent=Physo141593;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 . repeat_region 30896 30904 . ? . description=dust scaffold_101 . repeat_region 30936 30957 . ? . description=trf scaffold_101 . repeat_region 33242 34007 . + . description=GypsyPi-1c_I-int scaffold_101 . repeat_region 34108 34127 . ? . description=dust scaffold_101 . repeat_region 34108 34127 . ? . description=trf scaffold_101 . repeat_region 36307 36447 . ? . description=trf scaffold_101 ensembl protein_coding_gene 38427 39062 . - . ID=Physo122119;biotype=protein_coding;external_name=estExt_Genewise1.C_1010026;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 38427 39062 . - . ID=Physo122119;Parent=Physo122119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 38427 38969 . - 0 ID=Physo122119;Parent=Physo122119;rank=1 scaffold_101 . exon 38427 39062 . - . ID=Physo122119.1;Parent=Physo122119;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 31539 33862 . + . ID=Physo141594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010007;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 31539 33862 . + . ID=Physo141594;Parent=Physo141594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 31539 32351 . + 0 ID=Physo141594;Parent=Physo141594;rank=1 scaffold_101 . exon 31539 32351 . + . ID=Physo141594.1;Parent=Physo141594;constitutive=1;rank=1 scaffold_101 . CDS 32421 33130 . + 0 ID=Physo141594;Parent=Physo141594;rank=2 scaffold_101 . exon 32421 33130 . + . ID=Physo141594.2;Parent=Physo141594;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_101 . CDS 33280 33326 . + 0 ID=Physo141594;Parent=Physo141594;rank=3 scaffold_101 . exon 33280 33326 . + . ID=Physo141594.3;Parent=Physo141594;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_101 . CDS 33377 33393 . + 0 ID=Physo141594;Parent=Physo141594;rank=4 scaffold_101 . exon 33377 33393 . + . ID=Physo141594.4;Parent=Physo141594;constitutive=1;ensembl_phase=1;rank=4 scaffold_101 . CDS 33431 33862 . + 0 ID=Physo141594;Parent=Physo141594;rank=5 scaffold_101 . exon 33431 33862 . + . ID=Physo141594.5;Parent=Physo141594;constitutive=1;rank=5 scaffold_101 ensembl protein_coding_gene 36367 36942 . - . ID=Physo141595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010008;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 36367 36942 . - . ID=Physo141595;Parent=Physo141595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 36367 36942 . - 0 ID=Physo141595;Parent=Physo141595;rank=1 scaffold_101 . exon 36367 36942 . - . ID=Physo141595.1;Parent=Physo141595;constitutive=1;rank=1 scaffold_101 . biological_region 46356 46364 0.999 + . logic_name=eponine scaffold_101 . biological_region 47633 47638 0.999 - . logic_name=eponine scaffold_101 . biological_region 48441 48445 0.999 - . logic_name=eponine scaffold_101 ensembl protein_coding_gene 40786 41743 . - . ID=Physo141596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010009;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 40786 41743 . - . ID=Physo141596;Parent=Physo141596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 40786 40803 . - 0 ID=Physo141596;Parent=Physo141596;rank=2 scaffold_101 . exon 40786 40803 . - . ID=Physo141596.2;Parent=Physo141596;constitutive=1;rank=2 scaffold_101 . CDS 40877 41743 . - 0 ID=Physo141596;Parent=Physo141596;rank=1 scaffold_101 . exon 40877 41743 . - . ID=Physo141596.1;Parent=Physo141596;constitutive=1;rank=1 scaffold_101 . repeat_region 48796 48818 . ? . description=dust scaffold_101 . repeat_region 50390 50439 . ? . description=dust scaffold_101 . repeat_region 51570 51632 . ? . description=trf scaffold_101 . repeat_region 51571 51641 . ? . description=trf scaffold_101 ensembl protein_coding_gene 48826 51968 . + . ID=Physo141597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010010;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 48826 51968 . + . ID=Physo141597;Parent=Physo141597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 48826 49241 . + 0 ID=Physo141597;Parent=Physo141597;rank=1 scaffold_101 . exon 48826 49241 . + . ID=Physo141597.1;Parent=Physo141597;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 49341 49702 . + 0 ID=Physo141597;Parent=Physo141597;rank=2 scaffold_101 . exon 49341 49702 . + . ID=Physo141597.2;Parent=Physo141597;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 49735 49862 . + 0 ID=Physo141597;Parent=Physo141597;rank=3 scaffold_101 . exon 49735 49862 . + . ID=Physo141597.3;Parent=Physo141597;constitutive=1;ensembl_phase=1;rank=3 scaffold_101 . CDS 50108 50228 . + 0 ID=Physo141597;Parent=Physo141597;rank=4 scaffold_101 . exon 50108 50228 . + . ID=Physo141597.4;Parent=Physo141597;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_101 . CDS 50834 50961 . + 0 ID=Physo141597;Parent=Physo141597;rank=5 scaffold_101 . exon 50834 50961 . + . ID=Physo141597.5;Parent=Physo141597;constitutive=1;ensembl_phase=1;rank=5 scaffold_101 . CDS 51207 51263 . + 0 ID=Physo141597;Parent=Physo141597;rank=6 scaffold_101 . exon 51207 51263 . + . ID=Physo141597.6;Parent=Physo141597;constitutive=1;rank=6 scaffold_101 . CDS 51405 51968 . + 0 ID=Physo141597;Parent=Physo141597;rank=7 scaffold_101 . exon 51405 51968 . + . ID=Physo141597.7;Parent=Physo141597;constitutive=1;rank=7 scaffold_101 ensembl protein_coding_gene 53716 60326 . + . ID=Physo141598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010011;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 53716 60326 . + . ID=Physo141598;Parent=Physo141598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 53716 55673 . + 0 ID=Physo141598;Parent=Physo141598;rank=1 scaffold_101 . exon 53716 55673 . + . ID=Physo141598.1;Parent=Physo141598;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 55801 56214 . + 0 ID=Physo141598;Parent=Physo141598;rank=2 scaffold_101 . exon 55801 56214 . + . ID=Physo141598.2;Parent=Physo141598;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_101 . CDS 56282 56313 . + 0 ID=Physo141598;Parent=Physo141598;rank=3 scaffold_101 . exon 56282 56313 . + . ID=Physo141598.3;Parent=Physo141598;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_101 . CDS 56579 56799 . + 0 ID=Physo141598;Parent=Physo141598;rank=4 scaffold_101 . exon 56579 56799 . + . ID=Physo141598.4;Parent=Physo141598;constitutive=1;ensembl_phase=1;rank=4 scaffold_101 . CDS 56930 57214 . + 0 ID=Physo141598;Parent=Physo141598;rank=5 scaffold_101 . exon 56930 57214 . + . ID=Physo141598.5;Parent=Physo141598;constitutive=1;rank=5 scaffold_101 . CDS 57243 57499 . + 0 ID=Physo141598;Parent=Physo141598;rank=6 scaffold_101 . exon 57243 57499 . + . ID=Physo141598.6;Parent=Physo141598;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_101 . CDS 57566 60326 . + 0 ID=Physo141598;Parent=Physo141598;rank=7 scaffold_101 . exon 57566 60326 . + . ID=Physo141598.7;Parent=Physo141598;constitutive=1;ensembl_phase=2;rank=7 scaffold_101 . biological_region 65465 65467 0.999 - . logic_name=eponine scaffold_101 . biological_region 66027 66028 0.999 - . logic_name=eponine scaffold_101 . biological_region 66453 66459 0.999 + . logic_name=eponine scaffold_101 ensembl protein_coding_gene 61671 62537 . + . ID=Physo141599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010012;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 61671 62537 . + . ID=Physo141599;Parent=Physo141599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 61671 62537 . + 0 ID=Physo141599;Parent=Physo141599;rank=1 scaffold_101 . exon 61671 62537 . + . ID=Physo141599.1;Parent=Physo141599;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 62846 66728 . - . ID=Physo141600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010013;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 62846 66728 . - . ID=Physo141600;Parent=Physo141600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 62846 63957 . - 0 ID=Physo141600;Parent=Physo141600;rank=6 scaffold_101 . exon 62846 63957 . - . ID=Physo141600.6;Parent=Physo141600;constitutive=1;ensembl_phase=1;rank=6 scaffold_101 . CDS 64075 65200 . - 0 ID=Physo141600;Parent=Physo141600;rank=5 scaffold_101 . exon 64075 65200 . - . ID=Physo141600.5;Parent=Physo141600;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_101 . CDS 65291 66193 . - 0 ID=Physo141600;Parent=Physo141600;rank=4 scaffold_101 . exon 65291 66193 . - . ID=Physo141600.4;Parent=Physo141600;constitutive=1;rank=4 scaffold_101 . CDS 66279 66413 . - 0 ID=Physo141600;Parent=Physo141600;rank=3 scaffold_101 . exon 66279 66413 . - . ID=Physo141600.3;Parent=Physo141600;constitutive=1;rank=3 scaffold_101 . CDS 66493 66639 . - 0 ID=Physo141600;Parent=Physo141600;rank=2 scaffold_101 . exon 66493 66639 . - . ID=Physo141600.2;Parent=Physo141600;constitutive=1;rank=2 scaffold_101 . CDS 66672 66728 . - 0 ID=Physo141600;Parent=Physo141600;rank=1 scaffold_101 . exon 66672 66728 . - . ID=Physo141600.1;Parent=Physo141600;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 67574 68398 . - . ID=Physo141601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010014;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 67574 68398 . - . ID=Physo141601;Parent=Physo141601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 67574 68398 . - 0 ID=Physo141601;Parent=Physo141601;rank=1 scaffold_101 . exon 67574 68398 . - . ID=Physo141601.1;Parent=Physo141601;constitutive=1;rank=1 scaffold_101 . repeat_region 68452 68493 . ? . description=dust scaffold_101 . repeat_region 70176 70252 . ? . description=trf scaffold_101 . repeat_region 70176 70252 . ? . description=trf scaffold_101 . repeat_region 73630 73649 . ? . description=dust scaffold_101 . repeat_region 73630 73649 . ? . description=trf scaffold_101 . repeat_region 75731 75741 . ? . description=dust scaffold_101 . repeat_region 75873 75882 . ? . description=dust scaffold_101 . repeat_region 76075 76257 . - . description=GypsyPi-1c_LTR scaffold_101 . repeat_region 76379 76690 . - . description=GypsyPi-1c_I-int scaffold_101 . repeat_region 77235 82521 . - . description=GypsyPi-1c_I-int scaffold_101 ensembl protein_coding_gene 70672 74144 . - . ID=Physo141602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010015;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 70672 74144 . - . ID=Physo141602;Parent=Physo141602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 70672 71100 . - 0 ID=Physo141602;Parent=Physo141602;rank=7 scaffold_101 . exon 70672 71100 . - . ID=Physo141602.7;Parent=Physo141602;constitutive=1;rank=7 scaffold_101 . CDS 71133 71319 . - 0 ID=Physo141602;Parent=Physo141602;rank=6 scaffold_101 . exon 71133 71319 . - . ID=Physo141602.6;Parent=Physo141602;constitutive=1;ensembl_phase=2;rank=6 scaffold_101 . CDS 71498 72519 . - 0 ID=Physo141602;Parent=Physo141602;rank=5 scaffold_101 . exon 71498 72519 . - . ID=Physo141602.5;Parent=Physo141602;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_101 . CDS 72606 73322 . - 0 ID=Physo141602;Parent=Physo141602;rank=4 scaffold_101 . exon 72606 73322 . - . ID=Physo141602.4;Parent=Physo141602;constitutive=1;rank=4 scaffold_101 . CDS 73415 73613 . - 0 ID=Physo141602;Parent=Physo141602;rank=3 scaffold_101 . exon 73415 73613 . - . ID=Physo141602.3;Parent=Physo141602;constitutive=1;ensembl_phase=2;rank=3 scaffold_101 . CDS 73656 73942 . - 0 ID=Physo141602;Parent=Physo141602;rank=2 scaffold_101 . exon 73656 73942 . - . ID=Physo141602.2;Parent=Physo141602;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_101 . CDS 74073 74144 . - 0 ID=Physo141602;Parent=Physo141602;rank=1 scaffold_101 . exon 74073 74144 . - . ID=Physo141602.1;Parent=Physo141602;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 76565 78736 . + . ID=Physo141603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010016;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 76565 78736 . + . ID=Physo141603;Parent=Physo141603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 76565 76699 . + 0 ID=Physo141603;Parent=Physo141603;rank=1 scaffold_101 . exon 76565 76699 . + . ID=Physo141603.1;Parent=Physo141603;constitutive=1;rank=1 scaffold_101 . CDS 76855 77000 . + 0 ID=Physo141603;Parent=Physo141603;rank=2 scaffold_101 . exon 76855 77000 . + . ID=Physo141603.2;Parent=Physo141603;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_101 . CDS 77024 77423 . + 0 ID=Physo141603;Parent=Physo141603;rank=3 scaffold_101 . exon 77024 77423 . + . ID=Physo141603.3;Parent=Physo141603;constitutive=1;ensembl_phase=2;rank=3 scaffold_101 . CDS 77579 78736 . + 0 ID=Physo141603;Parent=Physo141603;rank=4 scaffold_101 . exon 77579 78736 . + . ID=Physo141603.4;Parent=Physo141603;constitutive=1;rank=4 scaffold_101 . biological_region 78463 78464 0.999 - . logic_name=eponine scaffold_101 . biological_region 78576 78581 0.999 - . logic_name=eponine scaffold_101 . biological_region 78627 78630 0.999 - . logic_name=eponine scaffold_101 . biological_region 79311 79314 0.999 + . logic_name=eponine scaffold_101 . biological_region 83511 83514 0.999 + . logic_name=eponine scaffold_101 . biological_region 83529 83533 0.999 - . logic_name=eponine scaffold_101 . biological_region 83789 83790 0.999 - . logic_name=eponine scaffold_101 . biological_region 85235 85239 0.999 + . logic_name=eponine scaffold_101 . biological_region 85314 85318 0.999 - . logic_name=eponine scaffold_101 . biological_region 85369 85373 0.999 + . logic_name=eponine scaffold_101 . biological_region 87022 87022 0.999 - . logic_name=eponine scaffold_101 ensembl protein_coding_gene 87292 88373 . - . ID=Physo122128;biotype=protein_coding;external_name=estExt_Genewise1.C_1010035;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 87292 88373 . - . ID=Physo122128;Parent=Physo122128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 87292 87647 . - 0 ID=Physo122128;Parent=Physo122128;rank=4 scaffold_101 . exon 87292 87647 . - . ID=Physo122128.5;Parent=Physo122128;constitutive=1;ensembl_phase=1;rank=5 scaffold_101 . CDS 87722 87837 . - 0 ID=Physo122128;Parent=Physo122128;rank=3 scaffold_101 . exon 87722 87837 . - . ID=Physo122128.4;Parent=Physo122128;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_101 . CDS 87907 87981 . - 0 ID=Physo122128;Parent=Physo122128;rank=2 scaffold_101 . CDS 88061 88122 . - 0 ID=Physo122128;Parent=Physo122128;rank=1 scaffold_101 ensembl protein_coding_gene 79019 83946 . - . ID=Physo141604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010017;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 79019 83946 . - . ID=Physo141604;Parent=Physo141604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 79019 79027 . - 0 ID=Physo141604;Parent=Physo141604;rank=5 scaffold_101 . exon 79019 79027 . - . ID=Physo141604.5;Parent=Physo141604;constitutive=1;rank=5 scaffold_101 . CDS 79074 82112 . - 0 ID=Physo141604;Parent=Physo141604;rank=4 scaffold_101 . exon 79074 82112 . - . ID=Physo141604.4;Parent=Physo141604;constitutive=1;rank=4 scaffold_101 . CDS 82285 82847 . - 0 ID=Physo141604;Parent=Physo141604;rank=3 scaffold_101 . exon 82285 82847 . - . ID=Physo141604.3;Parent=Physo141604;constitutive=1;ensembl_phase=1;rank=3 scaffold_101 . CDS 83005 83263 . - 0 ID=Physo141604;Parent=Physo141604;rank=2 scaffold_101 . exon 83005 83263 . - . ID=Physo141604.2;Parent=Physo141604;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_101 . CDS 83287 83946 . - 0 ID=Physo141604;Parent=Physo141604;rank=1 scaffold_101 . exon 83287 83946 . - . ID=Physo141604.1;Parent=Physo141604;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 84793 87029 . + . ID=Physo158358;biotype=protein_coding;external_name=C_scaffold_101000001;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 84793 87029 . + . ID=Physo158358;Parent=Physo158358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 84793 84806 . + 0 ID=Physo158358;Parent=Physo158358;rank=1 scaffold_101 . exon 84793 84806 . + . ID=Physo158358.1;Parent=Physo158358;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 84929 85005 . + 0 ID=Physo158358;Parent=Physo158358;rank=2 scaffold_101 . exon 84929 85005 . + . ID=Physo158358.2;Parent=Physo158358;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 85096 85335 . + 0 ID=Physo158358;Parent=Physo158358;rank=3 scaffold_101 . exon 85096 85335 . + . ID=Physo158358.3;Parent=Physo158358;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_101 . CDS 85868 86062 . + 0 ID=Physo158358;Parent=Physo158358;rank=4 scaffold_101 . exon 85868 86062 . + . ID=Physo158358.4;Parent=Physo158358;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_101 . CDS 86148 86254 . + 0 ID=Physo158358;Parent=Physo158358;rank=5 scaffold_101 . exon 86148 86254 . + . ID=Physo158358.5;Parent=Physo158358;constitutive=1;ensembl_phase=1;rank=5 scaffold_101 . CDS 86348 86430 . + 0 ID=Physo158358;Parent=Physo158358;rank=6 scaffold_101 . exon 86348 86430 . + . ID=Physo158358.6;Parent=Physo158358;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_101 . CDS 86505 86641 . + 0 ID=Physo158358;Parent=Physo158358;rank=7 scaffold_101 . exon 86505 86641 . + . ID=Physo158358.7;Parent=Physo158358;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_101 . CDS 86713 87029 . + 0 ID=Physo158358;Parent=Physo158358;rank=8 scaffold_101 . exon 86713 87029 . + . ID=Physo158358.8;Parent=Physo158358;constitutive=1;ensembl_phase=1;rank=8 scaffold_101 . repeat_region 88366 88393 . ? . description=trf scaffold_101 . repeat_region 89079 89104 . ? . description=dust scaffold_101 . repeat_region 89079 89104 . ? . description=trf scaffold_101 . repeat_region 90020 90027 . ? . description=dust scaffold_101 . repeat_region 91241 91279 . ? . description=dust scaffold_101 . repeat_region 92813 92822 . ? . description=dust scaffold_101 . exon 87907 87981 . - . ID=Physo122128.3;Parent=Physo122128;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_101 . exon 88061 88215 . - . ID=Physo122128.2;Parent=Physo122128;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_101 . exon 88281 88373 . - . ID=Physo122128.1;Parent=Physo122128;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 90116 90826 . + . ID=Physo141608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010021;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 90116 90826 . + . ID=Physo141608;Parent=Physo141608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 90116 90826 . + 0 ID=Physo141608;Parent=Physo141608;rank=1 scaffold_101 . exon 90116 90826 . + . ID=Physo141608.1;Parent=Physo141608;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 91193 92200 . - . ID=Physo141609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010022;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 91193 92200 . - . ID=Physo141609;Parent=Physo141609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 91193 92200 . - . ID=Physo141609.1;Parent=Physo141609;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 91322 92170 . - 0 ID=Physo141609;Parent=Physo141609;rank=1 scaffold_101 ensembl protein_coding_gene 92865 93868 . + . ID=Physo141610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010023;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 92865 93868 . + . ID=Physo141610;Parent=Physo141610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 92865 93868 . + . ID=Physo141610.1;Parent=Physo141610;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 92898 93746 . + 0 ID=Physo141610;Parent=Physo141610;rank=1 scaffold_101 ensembl protein_coding_gene 96183 96987 . - . ID=Physo141612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010025;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 96183 96987 . - . ID=Physo141612;Parent=Physo141612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 96183 96266 . - 0 ID=Physo141612;Parent=Physo141612;rank=5 scaffold_101 . exon 96183 96266 . - . ID=Physo141612.5;Parent=Physo141612;constitutive=1;rank=5 scaffold_101 . CDS 96340 96404 . - 0 ID=Physo141612;Parent=Physo141612;rank=4 scaffold_101 . exon 96340 96404 . - . ID=Physo141612.4;Parent=Physo141612;constitutive=1;ensembl_phase=1;rank=4 scaffold_101 . CDS 96477 96554 . - 0 ID=Physo141612;Parent=Physo141612;rank=3 scaffold_101 . exon 96477 96554 . - . ID=Physo141612.3;Parent=Physo141612;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_101 . CDS 96656 96737 . - 0 ID=Physo141612;Parent=Physo141612;rank=2 scaffold_101 . exon 96656 96737 . - . ID=Physo141612.2;Parent=Physo141612;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_101 . CDS 96814 96945 . - 0 ID=Physo141612;Parent=Physo141612;rank=1 scaffold_101 . exon 96814 96987 . - . ID=Physo141612.1;Parent=Physo141612;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 94183 96020 . + . ID=Physo158359;biotype=protein_coding;external_name=C_scaffold_101000002;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 94183 96020 . + . ID=Physo158359;Parent=Physo158359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 94183 94428 . + . ID=Physo158359.1;Parent=Physo158359;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 94185 94428 . + 0 ID=Physo158359;Parent=Physo158359;rank=1 scaffold_101 . CDS 94506 94962 . + 0 ID=Physo158359;Parent=Physo158359;rank=2 scaffold_101 . exon 94506 94962 . + . ID=Physo158359.2;Parent=Physo158359;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_101 . CDS 95088 95109 . + 0 ID=Physo158359;Parent=Physo158359;rank=3 scaffold_101 . exon 95088 95109 . + . ID=Physo158359.3;Parent=Physo158359;constitutive=1;ensembl_phase=2;rank=3 scaffold_101 . CDS 95255 95795 . + 0 ID=Physo158359;Parent=Physo158359;rank=4 scaffold_101 . exon 95255 95795 . + . ID=Physo158359.4;Parent=Physo158359;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_101 . CDS 95866 96020 . + 0 ID=Physo158359;Parent=Physo158359;rank=5 scaffold_101 . exon 95866 96020 . + . ID=Physo158359.5;Parent=Physo158359;constitutive=1;ensembl_phase=1;rank=5 scaffold_101 ensembl protein_coding_gene 97240 98824 . - . ID=Physo158364;biotype=protein_coding;external_name=C_scaffold_101000007;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 97240 98824 . - . ID=Physo158364;Parent=Physo158364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 97240 97700 . - 0 ID=Physo158364;Parent=Physo158364;rank=5 scaffold_101 . exon 97240 97700 . - . ID=Physo158364.5;Parent=Physo158364;constitutive=1;ensembl_phase=1;rank=5 scaffold_101 . CDS 97947 98151 . - 0 ID=Physo158364;Parent=Physo158364;rank=4 scaffold_101 . CDS 98230 98446 . - 0 ID=Physo158364;Parent=Physo158364;rank=3 scaffold_101 . CDS 98507 98621 . - 0 ID=Physo158364;Parent=Physo158364;rank=2 scaffold_101 . CDS 98689 98824 . - 0 ID=Physo158364;Parent=Physo158364;rank=1 scaffold_101 . repeat_region 101417 101463 . + . description=(CAG)n scaffold_101 . repeat_region 101727 101914 . + . description=(GCATG)n scaffold_101 . biological_region 102228 102233 0.999 - . logic_name=eponine scaffold_101 . biological_region 106827 106829 0.999 + . logic_name=eponine scaffold_101 . biological_region 106834 106839 0.999 - . logic_name=eponine scaffold_101 . biological_region 106929 106933 0.999 - . logic_name=eponine scaffold_101 ensembl protein_coding_gene 100120 100610 . - . ID=Physo141614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010027;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 100120 100610 . - . ID=Physo141614;Parent=Physo141614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 100120 100246 . - 0 ID=Physo141614;Parent=Physo141614;rank=2 scaffold_101 . exon 100120 100246 . - . ID=Physo141614.2;Parent=Physo141614;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 100345 100610 . - 0 ID=Physo141614;Parent=Physo141614;rank=1 scaffold_101 . exon 100345 100610 . - . ID=Physo141614.1;Parent=Physo141614;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 ensembl protein_coding_gene 100774 102074 . + . ID=Physo141615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010028;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 100774 102074 . + . ID=Physo141615;Parent=Physo141615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 100774 100884 . + 0 ID=Physo141615;Parent=Physo141615;rank=1 scaffold_101 . exon 100774 100884 . + . ID=Physo141615.1;Parent=Physo141615;constitutive=1;rank=1 scaffold_101 . CDS 100967 102007 . + 0 ID=Physo141615;Parent=Physo141615;rank=2 scaffold_101 . exon 100967 102074 . + . ID=Physo141615.2;Parent=Physo141615;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_101 ensembl protein_coding_gene 102269 105000 . + . ID=Physo141616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010029;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 102269 105000 . + . ID=Physo141616;Parent=Physo141616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 102269 105000 . + . ID=Physo141616.1;Parent=Physo141616;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 102285 104999 . + 0 ID=Physo141616;Parent=Physo141616;rank=1 scaffold_101 ensembl protein_coding_gene 105765 106289 . - . ID=Physo141617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010030;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 105765 106289 . - . ID=Physo141617;Parent=Physo141617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 105765 105902 . - 0 ID=Physo141617;Parent=Physo141617;rank=3 scaffold_101 . exon 105765 105902 . - . ID=Physo141617.3;Parent=Physo141617;constitutive=1;rank=3 scaffold_101 . CDS 105978 106111 . - 0 ID=Physo141617;Parent=Physo141617;rank=2 scaffold_101 . exon 105978 106111 . - . ID=Physo141617.2;Parent=Physo141617;constitutive=1;ensembl_phase=1;rank=2 scaffold_101 . CDS 106190 106289 . - 0 ID=Physo141617;Parent=Physo141617;rank=1 scaffold_101 . exon 106190 106289 . - . ID=Physo141617.1;Parent=Physo141617;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 . exon 97947 98151 . - . ID=Physo158364.4;Parent=Physo158364;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_101 . exon 98230 98446 . - . ID=Physo158364.3;Parent=Physo158364;constitutive=1;ensembl_phase=2;rank=3 scaffold_101 . exon 98507 98621 . - . ID=Physo158364.2;Parent=Physo158364;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_101 . exon 98689 98824 . - . ID=Physo158364.1;Parent=Physo158364;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 . repeat_region 109939 109963 . ? . description=trf scaffold_101 . repeat_region 114708 114715 . ? . description=dust scaffold_101 ensembl protein_coding_gene 107486 108100 . + . ID=Physo141618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010031;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 107486 108100 . + . ID=Physo141618;Parent=Physo141618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 107486 107844 . + 0 ID=Physo141618;Parent=Physo141618;rank=1 scaffold_101 . exon 107486 107844 . + . ID=Physo141618.1;Parent=Physo141618;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 107986 108100 . + 0 ID=Physo141618;Parent=Physo141618;rank=2 scaffold_101 . exon 107986 108100 . + . ID=Physo141618.2;Parent=Physo141618;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 ensembl protein_coding_gene 108802 109446 . + . ID=Physo141619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010032;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 108802 109446 . + . ID=Physo141619;Parent=Physo141619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 108802 108884 . + . ID=Physo141619.1;Parent=Physo141619;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 108804 108884 . + 0 ID=Physo141619;Parent=Physo141619;rank=1 scaffold_101 . CDS 108968 108998 . + 0 ID=Physo141619;Parent=Physo141619;rank=2 scaffold_101 . exon 108968 108998 . + . ID=Physo141619.2;Parent=Physo141619;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_101 . CDS 109082 109163 . + 0 ID=Physo141619;Parent=Physo141619;rank=3 scaffold_101 . exon 109082 109163 . + . ID=Physo141619.3;Parent=Physo141619;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_101 . CDS 109242 109446 . + 0 ID=Physo141619;Parent=Physo141619;rank=4 scaffold_101 . exon 109242 109446 . + . ID=Physo141619.4;Parent=Physo141619;constitutive=1;ensembl_phase=2;rank=4 scaffold_101 ensembl protein_coding_gene 110244 110750 . + . ID=Physo141620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010033;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 110244 110750 . + . ID=Physo141620;Parent=Physo141620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 110244 110750 . + 0 ID=Physo141620;Parent=Physo141620;rank=1 scaffold_101 . exon 110244 110750 . + . ID=Physo141620.1;Parent=Physo141620;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 110894 112195 . - . ID=Physo141621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010034;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 110894 112195 . - . ID=Physo141621;Parent=Physo141621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 110894 112195 . - 0 ID=Physo141621;Parent=Physo141621;rank=1 scaffold_101 . exon 110894 112195 . - . ID=Physo141621.1;Parent=Physo141621;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 116326 121954 . - . ID=Physo141622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010035;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 116326 121954 . - . ID=Physo141622;Parent=Physo141622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 116326 116820 . - 0 ID=Physo141622;Parent=Physo141622;rank=9 scaffold_101 . exon 116326 116820 . - . ID=Physo141622.9;Parent=Physo141622;constitutive=1;rank=9 scaffold_101 . CDS 116992 117252 . - 0 ID=Physo141622;Parent=Physo141622;rank=8 scaffold_101 . exon 116992 117252 . - . ID=Physo141622.8;Parent=Physo141622;constitutive=1;rank=8 scaffold_101 . CDS 117934 118205 . - 0 ID=Physo141622;Parent=Physo141622;rank=7 scaffold_101 . CDS 118453 118914 . - 0 ID=Physo141622;Parent=Physo141622;rank=6 scaffold_101 . CDS 119053 119197 . - 0 ID=Physo141622;Parent=Physo141622;rank=5 scaffold_101 . CDS 119378 119400 . - 0 ID=Physo141622;Parent=Physo141622;rank=4 scaffold_101 . CDS 119455 120342 . - 0 ID=Physo141622;Parent=Physo141622;rank=3 scaffold_101 . CDS 120648 121326 . - 0 ID=Physo141622;Parent=Physo141622;rank=2 scaffold_101 . CDS 121691 121954 . - 0 ID=Physo141622;Parent=Physo141622;rank=1 scaffold_101 . biological_region 117970 117971 0.999 - . logic_name=eponine scaffold_101 . biological_region 122494 122496 0.999 - . logic_name=eponine scaffold_101 . biological_region 123398 123402 0.999 + . logic_name=eponine scaffold_101 . biological_region 124634 124638 0.999 + . logic_name=eponine scaffold_101 ensembl protein_coding_gene 124049 124730 . + . ID=Physo109408;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1010002;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 124049 124730 . + . ID=Physo109408;Parent=Physo109408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 124049 124729 . + 0 ID=Physo109408;Parent=Physo109408;rank=1 scaffold_101 . exon 124049 124730 . + . ID=Physo109408.1;Parent=Physo109408;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_101 . exon 117934 118205 . - . ID=Physo141622.7;Parent=Physo141622;constitutive=1;ensembl_phase=1;rank=7 scaffold_101 . exon 118453 118914 . - . ID=Physo141622.6;Parent=Physo141622;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_101 . exon 119053 119197 . - . ID=Physo141622.5;Parent=Physo141622;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_101 . exon 119378 119400 . - . ID=Physo141622.4;Parent=Physo141622;constitutive=1;ensembl_phase=1;rank=4 scaffold_101 . exon 119455 120342 . - . ID=Physo141622.3;Parent=Physo141622;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_101 . exon 120648 121326 . - . ID=Physo141622.2;Parent=Physo141622;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_101 . exon 121691 121954 . - . ID=Physo141622.1;Parent=Physo141622;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 122125 123730 . - . ID=Physo141623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010036;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 122125 123730 . - . ID=Physo141623;Parent=Physo141623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 122125 123273 . - . ID=Physo141623.3;Parent=Physo141623;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_101 . CDS 122192 123273 . - 0 ID=Physo141623;Parent=Physo141623;rank=3 scaffold_101 . CDS 123467 123537 . - 0 ID=Physo141623;Parent=Physo141623;rank=2 scaffold_101 . exon 123467 123537 . - . ID=Physo141623.2;Parent=Physo141623;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 123564 123616 . - 0 ID=Physo141623;Parent=Physo141623;rank=1 scaffold_101 . exon 123564 123730 . - . ID=Physo141623.1;Parent=Physo141623;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 124882 127117 . - . ID=Physo141625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010038;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 124882 127117 . - . ID=Physo141625;Parent=Physo141625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 124882 127117 . - . ID=Physo141625.1;Parent=Physo141625;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_101 . CDS 124934 127117 . - 0 ID=Physo141625;Parent=Physo141625;rank=1 scaffold_101 . repeat_region 127362 127404 . ? . description=trf scaffold_101 . repeat_region 127432 127439 . ? . description=dust scaffold_101 . repeat_region 130491 130503 . ? . description=dust scaffold_101 . repeat_region 133369 133376 . ? . description=dust scaffold_101 ensembl protein_coding_gene 127464 128133 . - . ID=Physo141626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010039;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 127464 128133 . - . ID=Physo141626;Parent=Physo141626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 127464 128133 . - . ID=Physo141626.1;Parent=Physo141626;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 127565 128107 . - 0 ID=Physo141626;Parent=Physo141626;rank=1 scaffold_101 . biological_region 138104 138106 0.999 - . logic_name=eponine scaffold_101 . repeat_region 139234 139390 . + . description=(CAG)n scaffold_101 . biological_region 144761 144763 0.999 + . logic_name=eponine scaffold_101 . biological_region 144776 144777 0.999 - . logic_name=eponine scaffold_101 . biological_region 145822 145824 0.999 - . logic_name=eponine scaffold_101 ensembl protein_coding_gene 138369 141141 . + . ID=Physo141627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010040;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 138369 141141 . + . ID=Physo141627;Parent=Physo141627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 138369 138542 . + . ID=Physo141627.1;Parent=Physo141627;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 138480 138542 . + 0 ID=Physo141627;Parent=Physo141627;rank=1 scaffold_101 . CDS 138638 138711 . + 0 ID=Physo141627;Parent=Physo141627;rank=2 scaffold_101 . exon 138638 138711 . + . ID=Physo141627.2;Parent=Physo141627;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_101 . CDS 138789 141141 . + 0 ID=Physo141627;Parent=Physo141627;rank=3 scaffold_101 . exon 138789 141141 . + . ID=Physo141627.3;Parent=Physo141627;constitutive=1;ensembl_phase=2;rank=3 scaffold_101 ensembl protein_coding_gene 141292 144398 . - . ID=Physo141628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010041;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 141292 144398 . - . ID=Physo141628;Parent=Physo141628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 141292 143452 . - . ID=Physo141628.5;Parent=Physo141628;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_101 . CDS 141364 143452 . - 0 ID=Physo141628;Parent=Physo141628;rank=5 scaffold_101 . CDS 143669 143734 . - 0 ID=Physo141628;Parent=Physo141628;rank=4 scaffold_101 . exon 143669 143734 . - . ID=Physo141628.4;Parent=Physo141628;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_101 . CDS 143809 143874 . - 0 ID=Physo141628;Parent=Physo141628;rank=3 scaffold_101 . exon 143809 143874 . - . ID=Physo141628.3;Parent=Physo141628;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_101 . CDS 143948 144004 . - 0 ID=Physo141628;Parent=Physo141628;rank=2 scaffold_101 . exon 143948 144004 . - . ID=Physo141628.2;Parent=Physo141628;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_101 . CDS 144079 144398 . - 0 ID=Physo141628;Parent=Physo141628;rank=1 scaffold_101 . exon 144079 144398 . - . ID=Physo141628.1;Parent=Physo141628;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 ensembl protein_coding_gene 144545 147327 . - . ID=Physo158369;biotype=protein_coding;external_name=C_scaffold_101000012;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 144545 147327 . - . ID=Physo158369;Parent=Physo158369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 144545 144846 . - 0 ID=Physo158369;Parent=Physo158369;rank=8 scaffold_101 . exon 144545 144846 . - . ID=Physo158369.8;Parent=Physo158369;constitutive=1;ensembl_phase=1;rank=8 scaffold_101 . CDS 144892 145290 . - 0 ID=Physo158369;Parent=Physo158369;rank=7 scaffold_101 . exon 144892 145290 . - . ID=Physo158369.7;Parent=Physo158369;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_101 . CDS 145324 145746 . - 0 ID=Physo158369;Parent=Physo158369;rank=6 scaffold_101 . exon 145324 145746 . - . ID=Physo158369.6;Parent=Physo158369;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_101 . CDS 145780 146042 . - 0 ID=Physo158369;Parent=Physo158369;rank=5 scaffold_101 . exon 145780 146042 . - . ID=Physo158369.5;Parent=Physo158369;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_101 . CDS 146207 146423 . - 0 ID=Physo158369;Parent=Physo158369;rank=4 scaffold_101 . exon 146207 146423 . - . ID=Physo158369.4;Parent=Physo158369;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_101 . CDS 146445 146978 . - 0 ID=Physo158369;Parent=Physo158369;rank=3 scaffold_101 . CDS 147038 147105 . - 0 ID=Physo158369;Parent=Physo158369;rank=2 scaffold_101 . CDS 147164 147327 . - 0 ID=Physo158369;Parent=Physo158369;rank=1 scaffold_101 . repeat_region 147686 147724 . ? . description=trf scaffold_101 . repeat_region 149487 149526 . ? . description=trf scaffold_101 . repeat_region 149488 149529 . ? . description=dust scaffold_101 . repeat_region 151108 151144 . ? . description=trf scaffold_101 ensembl protein_coding_gene 147877 148496 . + . ID=Physo141631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010044;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 147877 148496 . + . ID=Physo141631;Parent=Physo141631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 147877 147915 . + 0 ID=Physo141631;Parent=Physo141631;rank=1 scaffold_101 . exon 147877 147915 . + . ID=Physo141631.1;Parent=Physo141631;constitutive=1;rank=1 scaffold_101 . CDS 147998 148042 . + 0 ID=Physo141631;Parent=Physo141631;rank=2 scaffold_101 . exon 147998 148042 . + . ID=Physo141631.2;Parent=Physo141631;constitutive=1;rank=2 scaffold_101 . CDS 148149 148246 . + 0 ID=Physo141631;Parent=Physo141631;rank=3 scaffold_101 . exon 148149 148246 . + . ID=Physo141631.3;Parent=Physo141631;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_101 . CDS 148364 148496 . + 0 ID=Physo141631;Parent=Physo141631;rank=4 scaffold_101 . exon 148364 148496 . + . ID=Physo141631.4;Parent=Physo141631;constitutive=1;ensembl_phase=2;rank=4 scaffold_101 ensembl protein_coding_gene 149009 151588 . + . ID=Physo141632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010045;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 149009 151588 . + . ID=Physo141632;Parent=Physo141632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 149009 149034 . + 0 ID=Physo141632;Parent=Physo141632;rank=1 scaffold_101 . exon 149009 149034 . + . ID=Physo141632.1;Parent=Physo141632;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 149068 149230 . + 0 ID=Physo141632;Parent=Physo141632;rank=2 scaffold_101 . exon 149068 149230 . + . ID=Physo141632.2;Parent=Physo141632;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 149307 149906 . + 0 ID=Physo141632;Parent=Physo141632;rank=3 scaffold_101 . exon 149307 149906 . + . ID=Physo141632.3;Parent=Physo141632;constitutive=1;rank=3 scaffold_101 . CDS 149975 151588 . + 0 ID=Physo141632;Parent=Physo141632;rank=4 scaffold_101 . exon 149975 151588 . + . ID=Physo141632.4;Parent=Physo141632;constitutive=1;rank=4 scaffold_101 ensembl protein_coding_gene 152255 153475 . - . ID=Physo141633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010046;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 152255 153475 . - . ID=Physo141633;Parent=Physo141633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 152255 152350 . - 0 ID=Physo141633;Parent=Physo141633;rank=4 scaffold_101 . exon 152255 152350 . - . ID=Physo141633.4;Parent=Physo141633;constitutive=1;rank=4 scaffold_101 . CDS 152437 152514 . - 0 ID=Physo141633;Parent=Physo141633;rank=3 scaffold_101 . exon 152437 152514 . - . ID=Physo141633.3;Parent=Physo141633;constitutive=1;rank=3 scaffold_101 . CDS 152622 152754 . - 0 ID=Physo141633;Parent=Physo141633;rank=2 scaffold_101 . exon 152622 152754 . - . ID=Physo141633.2;Parent=Physo141633;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 152832 153475 . - 0 ID=Physo141633;Parent=Physo141633;rank=1 scaffold_101 . exon 152832 153475 . - . ID=Physo141633.1;Parent=Physo141633;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 ensembl protein_coding_gene 155315 156646 . + . ID=Physo141634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010047;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 155315 156646 . + . ID=Physo141634;Parent=Physo141634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 155315 156646 . + 0 ID=Physo141634;Parent=Physo141634;rank=1 scaffold_101 . exon 155315 156646 . + . ID=Physo141634.1;Parent=Physo141634;constitutive=1;rank=1 scaffold_101 . exon 146445 146978 . - . ID=Physo158369.3;Parent=Physo158369;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_101 . exon 147038 147105 . - . ID=Physo158369.2;Parent=Physo158369;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_101 . exon 147164 147327 . - . ID=Physo158369.1;Parent=Physo158369;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . biological_region 159019 159023 0.999 + . logic_name=eponine scaffold_101 . biological_region 159089 159095 0.999 + . logic_name=eponine scaffold_101 . biological_region 159104 159109 0.999 - . logic_name=eponine scaffold_101 . biological_region 159113 159118 0.999 + . logic_name=eponine scaffold_101 . biological_region 159155 159156 0.999 - . logic_name=eponine scaffold_101 . biological_region 159227 159232 0.999 + . logic_name=eponine scaffold_101 . biological_region 159295 159296 0.999 + . logic_name=eponine scaffold_101 . biological_region 159320 159320 0.999 + . logic_name=eponine scaffold_101 . biological_region 161773 161773 0.999 - . logic_name=eponine scaffold_101 . biological_region 164236 164241 0.999 + . logic_name=eponine scaffold_101 . biological_region 164321 164323 0.999 + . logic_name=eponine scaffold_101 . biological_region 164523 164525 0.999 + . logic_name=eponine scaffold_101 . biological_region 164583 164587 0.999 + . logic_name=eponine scaffold_101 . biological_region 164997 165000 0.999 - . logic_name=eponine scaffold_101 ensembl protein_coding_gene 163906 164826 . - . ID=Physo109409;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1010003;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 163906 164826 . - . ID=Physo109409;Parent=Physo109409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 163906 164700 . - 0 ID=Physo109409;Parent=Physo109409;rank=1 scaffold_101 . exon 163906 164826 . - . ID=Physo109409.1;Parent=Physo109409;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 156743 158388 . - . ID=Physo141635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010048;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 156743 158388 . - . ID=Physo141635;Parent=Physo141635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 156743 156811 . - . ID=Physo141635.7;Parent=Physo141635;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_101 . CDS 156776 156811 . - 0 ID=Physo141635;Parent=Physo141635;rank=7 scaffold_101 . CDS 156887 156958 . - 0 ID=Physo141635;Parent=Physo141635;rank=6 scaffold_101 . exon 156887 156958 . - . ID=Physo141635.6;Parent=Physo141635;constitutive=1;rank=6 scaffold_101 . CDS 157027 157417 . - 0 ID=Physo141635;Parent=Physo141635;rank=5 scaffold_101 . exon 157027 157417 . - . ID=Physo141635.5;Parent=Physo141635;constitutive=1;ensembl_phase=2;rank=5 scaffold_101 . CDS 157485 157585 . - 0 ID=Physo141635;Parent=Physo141635;rank=4 scaffold_101 . exon 157485 157585 . - . ID=Physo141635.4;Parent=Physo141635;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_101 . CDS 157654 157809 . - 0 ID=Physo141635;Parent=Physo141635;rank=3 scaffold_101 . exon 157654 157809 . - . ID=Physo141635.3;Parent=Physo141635;constitutive=1;rank=3 scaffold_101 . CDS 157846 157950 . - 0 ID=Physo141635;Parent=Physo141635;rank=2 scaffold_101 . exon 157846 157950 . - . ID=Physo141635.2;Parent=Physo141635;constitutive=1;rank=2 scaffold_101 . CDS 158044 158388 . - 0 ID=Physo141635;Parent=Physo141635;rank=1 scaffold_101 . exon 158044 158388 . - . ID=Physo141635.1;Parent=Physo141635;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 158996 160113 . + . ID=Physo141636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010049;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 158996 160113 . + . ID=Physo141636;Parent=Physo141636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 158996 159487 . + 0 ID=Physo141636;Parent=Physo141636;rank=1 scaffold_101 . exon 158996 159487 . + . ID=Physo141636.1;Parent=Physo141636;constitutive=1;rank=1 scaffold_101 . CDS 159567 159647 . + 0 ID=Physo141636;Parent=Physo141636;rank=2 scaffold_101 . exon 159567 159647 . + . ID=Physo141636.2;Parent=Physo141636;constitutive=1;rank=2 scaffold_101 . CDS 159721 160113 . + 0 ID=Physo141636;Parent=Physo141636;rank=3 scaffold_101 . exon 159721 160113 . + . ID=Physo141636.3;Parent=Physo141636;constitutive=1;rank=3 scaffold_101 ensembl protein_coding_gene 160787 162020 . - . ID=Physo141637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010050;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 160787 162020 . - . ID=Physo141637;Parent=Physo141637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 160787 160793 . - 0 ID=Physo141637;Parent=Physo141637;rank=5 scaffold_101 . exon 160787 160793 . - . ID=Physo141637.5;Parent=Physo141637;constitutive=1;ensembl_phase=2;rank=5 scaffold_101 . CDS 160838 161068 . - 0 ID=Physo141637;Parent=Physo141637;rank=4 scaffold_101 . exon 160838 161068 . - . ID=Physo141637.4;Parent=Physo141637;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_101 . CDS 161146 161300 . - 0 ID=Physo141637;Parent=Physo141637;rank=3 scaffold_101 . exon 161146 161300 . - . ID=Physo141637.3;Parent=Physo141637;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_101 . CDS 161374 161869 . - 0 ID=Physo141637;Parent=Physo141637;rank=2 scaffold_101 . exon 161374 161869 . - . ID=Physo141637.2;Parent=Physo141637;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 161956 162020 . - 0 ID=Physo141637;Parent=Physo141637;rank=1 scaffold_101 . exon 161956 162020 . - . ID=Physo141637.1;Parent=Physo141637;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 ensembl protein_coding_gene 162181 163538 . + . ID=Physo141638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010051;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 162181 163538 . + . ID=Physo141638;Parent=Physo141638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 162181 162209 . + 0 ID=Physo141638;Parent=Physo141638;rank=1 scaffold_101 . exon 162181 162209 . + . ID=Physo141638.1;Parent=Physo141638;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 162362 162692 . + 0 ID=Physo141638;Parent=Physo141638;rank=2 scaffold_101 . exon 162362 162692 . + . ID=Physo141638.2;Parent=Physo141638;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 162761 162886 . + 0 ID=Physo141638;Parent=Physo141638;rank=3 scaffold_101 . exon 162761 162886 . + . ID=Physo141638.3;Parent=Physo141638;constitutive=1;rank=3 scaffold_101 . CDS 162987 163025 . + 0 ID=Physo141638;Parent=Physo141638;rank=4 scaffold_101 . exon 162987 163025 . + . ID=Physo141638.4;Parent=Physo141638;constitutive=1;rank=4 scaffold_101 . CDS 163094 163240 . + 0 ID=Physo141638;Parent=Physo141638;rank=5 scaffold_101 . exon 163094 163240 . + . ID=Physo141638.5;Parent=Physo141638;constitutive=1;rank=5 scaffold_101 . CDS 163305 163538 . + 0 ID=Physo141638;Parent=Physo141638;rank=6 scaffold_101 . exon 163305 163538 . + . ID=Physo141638.6;Parent=Physo141638;constitutive=1;rank=6 scaffold_101 . repeat_region 171965 171973 . ? . description=dust scaffold_101 . repeat_region 173860 173944 . ? . description=trf scaffold_101 . repeat_region 173860 173944 . ? . description=dust scaffold_101 ensembl protein_coding_gene 170761 171279 . + . ID=Physo109410;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1010004;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 170761 171279 . + . ID=Physo109410;Parent=Physo109410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 170761 171095 . + . ID=Physo109410.1;Parent=Physo109410;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 170762 171095 . + 0 ID=Physo109410;Parent=Physo109410;rank=1 scaffold_101 . CDS 171187 171278 . + 0 ID=Physo109410;Parent=Physo109410;rank=2 scaffold_101 . exon 171187 171279 . + . ID=Physo109410.2;Parent=Physo109410;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_101 ensembl protein_coding_gene 171475 172081 . - . ID=Physo109411;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1010005;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 171475 172081 . - . ID=Physo109411;Parent=Physo109411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 171475 171939 . - 0 ID=Physo109411;Parent=Physo109411;rank=1 scaffold_101 . exon 171475 172081 . - . ID=Physo109411.1;Parent=Physo109411;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 172489 173958 . + . ID=Physo109412;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1010006;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 172489 173958 . + . ID=Physo109412;Parent=Physo109412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 172489 173958 . + 0 ID=Physo109412;Parent=Physo109412;rank=1 scaffold_101 . exon 172489 173958 . + . ID=Physo109412.1;Parent=Physo109412;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 167629 167853 . + . ID=Physo122159;biotype=protein_coding;external_name=estExt_Genewise1.C_1010066;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 167629 167853 . + . ID=Physo122159;Parent=Physo122159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 167629 167853 . + . ID=Physo122159.1;Parent=Physo122159;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 167631 167822 . + 0 ID=Physo122159;Parent=Physo122159;rank=1 scaffold_101 ensembl protein_coding_gene 168254 170427 . + . ID=Physo141640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010053;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 168254 170427 . + . ID=Physo141640;Parent=Physo141640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 168254 168894 . + 0 ID=Physo141640;Parent=Physo141640;rank=1 scaffold_101 . exon 168254 168894 . + . ID=Physo141640.1;Parent=Physo141640;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 169197 170427 . + 0 ID=Physo141640;Parent=Physo141640;rank=2 scaffold_101 . exon 169197 170427 . + . ID=Physo141640.2;Parent=Physo141640;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 ensembl protein_coding_gene 174248 174622 . + . ID=Physo141644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010057;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 174248 174622 . + . ID=Physo141644;Parent=Physo141644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 174248 174622 . + 0 ID=Physo141644;Parent=Physo141644;rank=1 scaffold_101 . exon 174248 174622 . + . ID=Physo141644.1;Parent=Physo141644;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 174670 175437 . - . ID=Physo141645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010058;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 174670 175437 . - . ID=Physo141645;Parent=Physo141645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 174670 174874 . - . ID=Physo141645.2;Parent=Physo141645;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_101 . CDS 174673 174874 . - 0 ID=Physo141645;Parent=Physo141645;rank=2 scaffold_101 . CDS 174957 175435 . - 0 ID=Physo141645;Parent=Physo141645;rank=1 scaffold_101 . exon 174957 175437 . - . ID=Physo141645.1;Parent=Physo141645;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_101 . biological_region 178020 178023 0.999 - . logic_name=eponine scaffold_101 . biological_region 182329 182330 0.999 + . logic_name=eponine scaffold_101 ensembl protein_coding_gene 177344 179564 . + . ID=Physo141646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010059;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 177344 179564 . + . ID=Physo141646;Parent=Physo141646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 177344 177447 . + 0 ID=Physo141646;Parent=Physo141646;rank=1 scaffold_101 . exon 177344 177447 . + . ID=Physo141646.1;Parent=Physo141646;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 177498 178296 . + 0 ID=Physo141646;Parent=Physo141646;rank=2 scaffold_101 . exon 177498 178296 . + . ID=Physo141646.2;Parent=Physo141646;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 178476 179564 . + 0 ID=Physo141646;Parent=Physo141646;rank=3 scaffold_101 . exon 178476 179564 . + . ID=Physo141646.3;Parent=Physo141646;constitutive=1;rank=3 scaffold_101 ensembl protein_coding_gene 181668 182873 . + . ID=Physo141647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010060;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 181668 182873 . + . ID=Physo141647;Parent=Physo141647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 181668 182873 . + 0 ID=Physo141647;Parent=Physo141647;rank=1 scaffold_101 . exon 181668 182873 . + . ID=Physo141647.1;Parent=Physo141647;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 183857 186832 . + . ID=Physo141648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010061;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 183857 186832 . + . ID=Physo141648;Parent=Physo141648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 183857 185488 . + 0 ID=Physo141648;Parent=Physo141648;rank=1 scaffold_101 . exon 183857 185488 . + . ID=Physo141648.1;Parent=Physo141648;constitutive=1;rank=1 scaffold_101 . CDS 185648 186832 . + 0 ID=Physo141648;Parent=Physo141648;rank=2 scaffold_101 . repeat_region 193332 193394 . ? . description=trf scaffold_101 . exon 185648 186832 . + . ID=Physo141648.2;Parent=Physo141648;constitutive=1;rank=2 scaffold_101 ensembl protein_coding_gene 187100 188955 . + . ID=Physo141649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010062;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 187100 188955 . + . ID=Physo141649;Parent=Physo141649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 187100 187257 . + 0 ID=Physo141649;Parent=Physo141649;rank=1 scaffold_101 . exon 187100 187257 . + . ID=Physo141649.1;Parent=Physo141649;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 187345 187480 . + 0 ID=Physo141649;Parent=Physo141649;rank=2 scaffold_101 . exon 187345 187480 . + . ID=Physo141649.2;Parent=Physo141649;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 . CDS 187528 187574 . + 0 ID=Physo141649;Parent=Physo141649;rank=3 scaffold_101 . exon 187528 187574 . + . ID=Physo141649.3;Parent=Physo141649;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_101 . CDS 187640 187739 . + 0 ID=Physo141649;Parent=Physo141649;rank=4 scaffold_101 . exon 187640 187739 . + . ID=Physo141649.4;Parent=Physo141649;constitutive=1;ensembl_phase=2;rank=4 scaffold_101 . CDS 187825 188093 . + 0 ID=Physo141649;Parent=Physo141649;rank=5 scaffold_101 . exon 187825 188093 . + . ID=Physo141649.5;Parent=Physo141649;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_101 . CDS 188158 188464 . + 0 ID=Physo141649;Parent=Physo141649;rank=6 scaffold_101 . exon 188158 188464 . + . ID=Physo141649.6;Parent=Physo141649;constitutive=1;ensembl_phase=2;rank=6 scaffold_101 . CDS 188533 188955 . + 0 ID=Physo141649;Parent=Physo141649;rank=7 scaffold_101 . exon 188533 188955 . + . ID=Physo141649.7;Parent=Physo141649;constitutive=1;rank=7 scaffold_101 ensembl protein_coding_gene 191144 191858 . + . ID=Physo141651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010064;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 191144 191858 . + . ID=Physo141651;Parent=Physo141651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 191144 191299 . + . ID=Physo141651.1;Parent=Physo141651;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 . CDS 191171 191299 . + 0 ID=Physo141651;Parent=Physo141651;rank=1 scaffold_101 . CDS 191375 191461 . + 0 ID=Physo141651;Parent=Physo141651;rank=2 scaffold_101 . exon 191375 191461 . + . ID=Physo141651.2;Parent=Physo141651;constitutive=1;rank=2 scaffold_101 . CDS 191557 191650 . + 0 ID=Physo141651;Parent=Physo141651;rank=3 scaffold_101 . exon 191557 191650 . + . ID=Physo141651.3;Parent=Physo141651;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_101 . CDS 191727 191767 . + 0 ID=Physo141651;Parent=Physo141651;rank=4 scaffold_101 . exon 191727 191858 . + . ID=Physo141651.4;Parent=Physo141651;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_101 ensembl protein_coding_gene 191977 193520 . - . ID=Physo141652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010065;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 191977 193520 . - . ID=Physo141652;Parent=Physo141652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 191977 193512 . - 0 ID=Physo141652;Parent=Physo141652;rank=1 scaffold_101 . exon 191977 193520 . - . ID=Physo141652.1;Parent=Physo141652;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 193693 194739 . + . ID=Physo141653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010066;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 193693 194739 . + . ID=Physo141653;Parent=Physo141653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 193693 194739 . + 0 ID=Physo141653;Parent=Physo141653;rank=1 scaffold_101 . exon 193693 194739 . + . ID=Physo141653.1;Parent=Physo141653;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 189280 190970 . - . ID=Physo158372;biotype=protein_coding;external_name=C_scaffold_101000015;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 189280 190970 . - . ID=Physo158372;Parent=Physo158372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 189280 189285 . - 0 ID=Physo158372;Parent=Physo158372;rank=8 scaffold_101 . exon 189280 189285 . - . ID=Physo158372.8;Parent=Physo158372;constitutive=1;rank=8 scaffold_101 . CDS 189392 189545 . - 0 ID=Physo158372;Parent=Physo158372;rank=7 scaffold_101 . exon 189392 189545 . - . ID=Physo158372.7;Parent=Physo158372;constitutive=1;ensembl_phase=2;rank=7 scaffold_101 . CDS 189635 189836 . - 0 ID=Physo158372;Parent=Physo158372;rank=6 scaffold_101 . exon 189635 189836 . - . ID=Physo158372.6;Parent=Physo158372;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_101 . CDS 190148 190250 . - 0 ID=Physo158372;Parent=Physo158372;rank=5 scaffold_101 . exon 190148 190250 . - . ID=Physo158372.5;Parent=Physo158372;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_101 . CDS 190347 190377 . - 0 ID=Physo158372;Parent=Physo158372;rank=4 scaffold_101 . exon 190347 190377 . - . ID=Physo158372.4;Parent=Physo158372;constitutive=1;ensembl_phase=2;rank=4 scaffold_101 . CDS 190501 190585 . - 0 ID=Physo158372;Parent=Physo158372;rank=3 scaffold_101 . exon 190501 190585 . - . ID=Physo158372.3;Parent=Physo158372;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_101 . CDS 190712 190780 . - 0 ID=Physo158372;Parent=Physo158372;rank=2 scaffold_101 . exon 190712 190780 . - . ID=Physo158372.2;Parent=Physo158372;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_101 . CDS 190922 190970 . - 0 ID=Physo158372;Parent=Physo158372;rank=1 scaffold_101 . exon 190922 190970 . - . ID=Physo158372.1;Parent=Physo158372;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 . biological_region 195238 195240 0.999 - . logic_name=eponine scaffold_101 . biological_region 199135 199138 0.999 + . logic_name=eponine scaffold_101 . biological_region 200326 200329 0.999 - . logic_name=eponine scaffold_101 . biological_region 202159 202159 0.999 + . logic_name=eponine scaffold_101 ensembl protein_coding_gene 201968 202584 . - . ID=Physo122185;biotype=protein_coding;external_name=estExt_Genewise1.C_1010092;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 201968 202584 . - . ID=Physo122185;Parent=Physo122185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 201968 202409 . - . ID=Physo122185.2;Parent=Physo122185;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_101 . CDS 202146 202409 . - 0 ID=Physo122185;Parent=Physo122185;rank=2 scaffold_101 . CDS 202509 202583 . - 0 ID=Physo122185;Parent=Physo122185;rank=1 scaffold_101 . exon 202509 202584 . - . ID=Physo122185.1;Parent=Physo122185;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 196450 197485 . + . ID=Physo141654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010067;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 196450 197485 . + . ID=Physo141654;Parent=Physo141654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 196450 196491 . + 0 ID=Physo141654;Parent=Physo141654;rank=1 scaffold_101 . exon 196450 196491 . + . ID=Physo141654.1;Parent=Physo141654;constitutive=1;rank=1 scaffold_101 . CDS 196518 196668 . + 0 ID=Physo141654;Parent=Physo141654;rank=2 scaffold_101 . exon 196518 196668 . + . ID=Physo141654.2;Parent=Physo141654;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_101 . CDS 196729 196950 . + 0 ID=Physo141654;Parent=Physo141654;rank=3 scaffold_101 . exon 196729 196950 . + . ID=Physo141654.3;Parent=Physo141654;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_101 . CDS 197031 197287 . + 0 ID=Physo141654;Parent=Physo141654;rank=4 scaffold_101 . exon 197031 197287 . + . ID=Physo141654.4;Parent=Physo141654;constitutive=1;ensembl_phase=1;rank=4 scaffold_101 . CDS 197360 197485 . + 0 ID=Physo141654;Parent=Physo141654;rank=5 scaffold_101 . exon 197360 197485 . + . ID=Physo141654.5;Parent=Physo141654;constitutive=1;rank=5 scaffold_101 ensembl protein_coding_gene 202820 203158 . + . ID=Physo141655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010068;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 202820 203158 . + . ID=Physo141655;Parent=Physo141655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 202820 203158 . + 0 ID=Physo141655;Parent=Physo141655;rank=1 scaffold_101 . exon 202820 203158 . + . ID=Physo141655.1;Parent=Physo141655;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 203351 204503 . - . ID=Physo141656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010069;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 203351 204503 . - . ID=Physo141656;Parent=Physo141656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 203351 203374 . - 0 ID=Physo141656;Parent=Physo141656;rank=4 scaffold_101 . exon 203351 203374 . - . ID=Physo141656.4;Parent=Physo141656;constitutive=1;rank=4 scaffold_101 . CDS 203525 203620 . - 0 ID=Physo141656;Parent=Physo141656;rank=3 scaffold_101 . exon 203525 203620 . - . ID=Physo141656.3;Parent=Physo141656;constitutive=1;rank=3 scaffold_101 . CDS 203709 203990 . - 0 ID=Physo141656;Parent=Physo141656;rank=2 scaffold_101 . exon 203709 203990 . - . ID=Physo141656.2;Parent=Physo141656;constitutive=1;rank=2 scaffold_101 . CDS 204081 204503 . - 0 ID=Physo141656;Parent=Physo141656;rank=1 scaffold_101 . exon 204081 204503 . - . ID=Physo141656.1;Parent=Physo141656;constitutive=1;rank=1 scaffold_101 . repeat_region 206180 206222 . ? . description=trf scaffold_101 . repeat_region 208934 208997 . ? . description=dust scaffold_101 ensembl protein_coding_gene 208919 209272 . + . ID=Physo158374;biotype=protein_coding;external_name=C_scaffold_101000017;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 208919 209272 . + . ID=Physo158374;Parent=Physo158374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 208919 209272 . + 0 ID=Physo158374;Parent=Physo158374;rank=1 scaffold_101 . exon 208919 209272 . + . ID=Physo158374.1;Parent=Physo158374;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 209972 215083 . - . ID=Physo158375;biotype=protein_coding;external_name=C_scaffold_101000018;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 209972 215083 . - . ID=Physo158375;Parent=Physo158375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 209972 210268 . - 0 ID=Physo158375;Parent=Physo158375;rank=12 scaffold_101 . exon 209972 210268 . - . ID=Physo158375.12;Parent=Physo158375;constitutive=1;rank=12 scaffold_101 . CDS 210346 210583 . - 0 ID=Physo158375;Parent=Physo158375;rank=11 scaffold_101 . exon 210346 210583 . - . ID=Physo158375.11;Parent=Physo158375;constitutive=1;ensembl_phase=2;rank=11 scaffold_101 . CDS 210754 211010 . - 0 ID=Physo158375;Parent=Physo158375;rank=10 scaffold_101 . exon 210754 211010 . - . ID=Physo158375.10;Parent=Physo158375;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_101 . CDS 211091 211566 . - 0 ID=Physo158375;Parent=Physo158375;rank=9 scaffold_101 . exon 211091 211566 . - . ID=Physo158375.9;Parent=Physo158375;constitutive=1;ensembl_phase=1;rank=9 scaffold_101 . CDS 211729 211833 . - 0 ID=Physo158375;Parent=Physo158375;rank=8 scaffold_101 . exon 211729 211833 . - . ID=Physo158375.8;Parent=Physo158375;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_101 . CDS 211903 212041 . - 0 ID=Physo158375;Parent=Physo158375;rank=7 scaffold_101 . exon 211903 212041 . - . ID=Physo158375.7;Parent=Physo158375;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_101 . CDS 212066 212407 . - 0 ID=Physo158375;Parent=Physo158375;rank=6 scaffold_101 . exon 212066 212407 . - . ID=Physo158375.6;Parent=Physo158375;constitutive=1;rank=6 scaffold_101 . CDS 212510 212663 . - 0 ID=Physo158375;Parent=Physo158375;rank=5 scaffold_101 . exon 212510 212663 . - . ID=Physo158375.5;Parent=Physo158375;constitutive=1;ensembl_phase=2;rank=5 scaffold_101 . CDS 212841 212916 . - 0 ID=Physo158375;Parent=Physo158375;rank=4 scaffold_101 . exon 212841 212916 . - . ID=Physo158375.4;Parent=Physo158375;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_101 . CDS 213004 213530 . - 0 ID=Physo158375;Parent=Physo158375;rank=3 scaffold_101 . exon 213004 213530 . - . ID=Physo158375.3;Parent=Physo158375;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_101 . CDS 213633 213913 . - 0 ID=Physo158375;Parent=Physo158375;rank=2 scaffold_101 . exon 213633 213913 . - . ID=Physo158375.2;Parent=Physo158375;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_101 . CDS 214055 215083 . - 0 ID=Physo158375;Parent=Physo158375;rank=1 scaffold_101 . exon 214055 215083 . - . ID=Physo158375.1;Parent=Physo158375;constitutive=1;rank=1 scaffold_101 . biological_region 214741 214746 0.999 + . logic_name=eponine scaffold_101 . biological_region 214996 214996 0.999 - . logic_name=eponine scaffold_101 . biological_region 215031 215035 0.999 - . logic_name=eponine scaffold_101 . biological_region 215054 215060 0.999 - . logic_name=eponine scaffold_101 ensembl tRNA_gene 222235 222307 . - . ID=EPrPSOG00000000002;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_101 ensembl transcript 222235 222307 . - . ID=EPrPSOT00000000002;Parent=EPrPSOG00000000002;biotype=tRNA;logic_name=ncrna_eg scaffold_101 . exon 222235 222307 . - . ID=EPrPSOE00000000002;Parent=EPrPSOT00000000002;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 ensembl protein_coding_gene 221053 221778 . - . ID=Physo141659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010072;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 221053 221778 . - . ID=Physo141659;Parent=Physo141659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 221053 221778 . - 0 ID=Physo141659;Parent=Physo141659;rank=1 scaffold_101 . exon 221053 221778 . - . ID=Physo141659.1;Parent=Physo141659;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 222890 223684 . - . ID=Physo141660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010073;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 222890 223684 . - . ID=Physo141660;Parent=Physo141660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 222890 223684 . - 0 ID=Physo141660;Parent=Physo141660;rank=1 scaffold_101 . exon 222890 223684 . - . ID=Physo141660.1;Parent=Physo141660;constitutive=1;rank=1 scaffold_101 . repeat_region 226314 226328 . ? . description=dust scaffold_101 . repeat_region 226642 226683 . ? . description=trf scaffold_101 . repeat_region 228654 228693 . ? . description=trf scaffold_101 . repeat_region 228812 229688 . ? . description=dust scaffold_101 . repeat_region 230104 230129 . ? . description=trf scaffold_101 . repeat_region 230567 230591 . ? . description=trf scaffold_101 . repeat_region 230644 231340 . ? . description=dust scaffold_101 . repeat_region 232179 232204 . ? . description=trf scaffold_101 . repeat_region 232521 232570 . ? . description=dust scaffold_101 . repeat_region 233354 234879 . ? . description=dust scaffold_101 . biological_region 238762 238764 0.999 - . logic_name=eponine scaffold_101 . biological_region 239132 239133 0.999 - . logic_name=eponine scaffold_101 ensembl tRNA_gene 235006 235078 . + . ID=EPrPSOG00000000168;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_101 ensembl transcript 235006 235078 . + . ID=EPrPSOT00000000168;Parent=EPrPSOG00000000168;biotype=tRNA;logic_name=ncrna_eg scaffold_101 . exon 235006 235078 . + . ID=EPrPSOE00000000168;Parent=EPrPSOT00000000168;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 ensembl protein_coding_gene 235535 236260 . + . ID=Physo141661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010074;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 235535 236260 . + . ID=Physo141661;Parent=Physo141661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 235535 236260 . + 0 ID=Physo141661;Parent=Physo141661;rank=1 scaffold_101 . exon 235535 236260 . + . ID=Physo141661.1;Parent=Physo141661;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 238509 239237 . + . ID=Physo141662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010075;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 238509 239237 . + . ID=Physo141662;Parent=Physo141662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 238509 239237 . + 0 ID=Physo141662;Parent=Physo141662;rank=1 scaffold_101 . exon 238509 239237 . + . ID=Physo141662.1;Parent=Physo141662;constitutive=1;rank=1 scaffold_101 . repeat_region 244372 244411 . ? . description=trf scaffold_101 . repeat_region 245287 247563 . ? . description=dust scaffold_101 . repeat_region 247564 262727 . ? . description=dust scaffold_101 . repeat_region 269291 269330 . ? . description=trf scaffold_101 . biological_region 269354 269360 0.999 - . logic_name=eponine scaffold_101 . biological_region 269378 269382 0.999 - . logic_name=eponine scaffold_101 . repeat_region 270414 270439 . ? . description=trf scaffold_101 . biological_region 270830 270832 0.999 - . logic_name=eponine scaffold_101 . repeat_region 270877 270901 . ? . description=trf scaffold_101 . biological_region 271200 271202 0.999 - . logic_name=eponine scaffold_101 ensembl tRNA_gene 267061 267133 . + . ID=EPrPSOG00000000131;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_101 ensembl transcript 267061 267133 . + . ID=EPrPSOT00000000131;Parent=EPrPSOG00000000131;biotype=tRNA;logic_name=ncrna_eg scaffold_101 . exon 267061 267133 . + . ID=EPrPSOE00000000131;Parent=EPrPSOT00000000131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_101 ensembl protein_coding_gene 273268 273643 . - . ID=Physo122197;biotype=protein_coding;external_name=estExt_Genewise1.C_1010104;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 273268 273643 . - . ID=Physo122197;Parent=Physo122197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 273268 273465 . - 0 ID=Physo122197;Parent=Physo122197;rank=1 scaffold_101 . exon 273268 273643 . - . ID=Physo122197.1;Parent=Physo122197;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 265684 266478 . + . ID=Physo141663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010076;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 265684 266478 . + . ID=Physo141663;Parent=Physo141663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 265684 266478 . + 0 ID=Physo141663;Parent=Physo141663;rank=1 scaffold_101 . exon 265684 266478 . + . ID=Physo141663.1;Parent=Physo141663;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 267590 268823 . + . ID=Physo141664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010077;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 267590 268823 . + . ID=Physo141664;Parent=Physo141664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 267590 268273 . + 0 ID=Physo141664;Parent=Physo141664;rank=1 scaffold_101 . exon 267590 268273 . + . ID=Physo141664.1;Parent=Physo141664;constitutive=1;rank=1 scaffold_101 . CDS 268497 268823 . + 0 ID=Physo141664;Parent=Physo141664;rank=2 scaffold_101 . exon 268497 268823 . + . ID=Physo141664.2;Parent=Physo141664;constitutive=1;rank=2 scaffold_101 ensembl protein_coding_gene 270577 271305 . + . ID=Physo141665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010078;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 270577 271305 . + . ID=Physo141665;Parent=Physo141665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 270577 271305 . + 0 ID=Physo141665;Parent=Physo141665;rank=1 scaffold_101 . exon 270577 271305 . + . ID=Physo141665.1;Parent=Physo141665;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 274281 276699 . + . ID=Physo141667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010080;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 274281 276699 . + . ID=Physo141667;Parent=Physo141667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 274281 276596 . + 0 ID=Physo141667;Parent=Physo141667;rank=1 scaffold_101 . exon 274281 276596 . + . ID=Physo141667.1;Parent=Physo141667;constitutive=1;rank=1 scaffold_101 . CDS 276619 276699 . + 0 ID=Physo141667;Parent=Physo141667;rank=2 scaffold_101 . exon 276619 276699 . + . ID=Physo141667.2;Parent=Physo141667;constitutive=1;rank=2 scaffold_101 ensembl protein_coding_gene 277359 279153 . - . ID=Physo141668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010081;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 277359 279153 . - . ID=Physo141668;Parent=Physo141668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 277359 277715 . - 0 ID=Physo141668;Parent=Physo141668;rank=4 scaffold_101 . exon 277359 277715 . - . ID=Physo141668.4;Parent=Physo141668;constitutive=1;rank=4 scaffold_101 . CDS 277789 278463 . - 0 ID=Physo141668;Parent=Physo141668;rank=3 scaffold_101 . exon 277789 278463 . - . ID=Physo141668.3;Parent=Physo141668;constitutive=1;rank=3 scaffold_101 . CDS 278544 278786 . - 0 ID=Physo141668;Parent=Physo141668;rank=2 scaffold_101 . exon 278544 278786 . - . ID=Physo141668.2;Parent=Physo141668;constitutive=1;rank=2 scaffold_101 . CDS 278869 279114 . - 0 ID=Physo141668;Parent=Physo141668;rank=1 scaffold_101 . exon 278869 279153 . - . ID=Physo141668.1;Parent=Physo141668;constitutive=1;ensembl_phase=-1;rank=1 scaffold_101 ensembl protein_coding_gene 280409 281165 . + . ID=Physo141669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010082;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 280409 281165 . + . ID=Physo141669;Parent=Physo141669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 280409 280737 . + 0 ID=Physo141669;Parent=Physo141669;rank=1 scaffold_101 . exon 280409 280737 . + . ID=Physo141669.1;Parent=Physo141669;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 . CDS 280790 281165 . + 0 ID=Physo141669;Parent=Physo141669;rank=2 scaffold_101 . exon 280790 281165 . + . ID=Physo141669.2;Parent=Physo141669;constitutive=1;ensembl_phase=2;rank=2 scaffold_101 ensembl protein_coding_gene 281656 285351 . + . ID=Physo141670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010083;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 281656 285351 . + . ID=Physo141670;Parent=Physo141670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 281656 285351 . + 0 ID=Physo141670;Parent=Physo141670;rank=1 scaffold_101 . exon 281656 285351 . + . ID=Physo141670.1;Parent=Physo141670;constitutive=1;rank=1 scaffold_101 . repeat_region 283713 283743 . ? . description=dust scaffold_101 . repeat_region 283717 283742 . ? . description=trf scaffold_101 . biological_region 284660 284664 0.999 + . logic_name=eponine scaffold_101 . repeat_region 285254 285285 . ? . description=trf scaffold_101 . repeat_region 285256 285312 . ? . description=trf scaffold_101 . biological_region 285918 285922 0.999 + . logic_name=eponine scaffold_101 . biological_region 285935 285940 0.999 - . logic_name=eponine scaffold_101 . biological_region 285940 285949 0.999 + . logic_name=eponine scaffold_101 . biological_region 286023 286030 0.999 - . logic_name=eponine scaffold_101 . biological_region 286099 286103 0.999 - . logic_name=eponine scaffold_101 . biological_region 286691 286694 0.999 + . logic_name=eponine scaffold_101 . biological_region 287896 287896 0.999 + . logic_name=eponine scaffold_101 . biological_region 287928 287929 0.999 + . logic_name=eponine scaffold_101 . biological_region 288732 288732 0.999 - . logic_name=eponine scaffold_101 . biological_region 289770 289773 0.999 - . logic_name=eponine scaffold_101 . biological_region 289964 289968 0.999 - . logic_name=eponine scaffold_101 . biological_region 291495 291500 0.999 + . logic_name=eponine scaffold_101 . biological_region 291561 291567 0.999 - . logic_name=eponine scaffold_101 . repeat_region 292617 292640 . ? . description=trf scaffold_101 ensembl protein_coding_gene 285803 287288 . - . ID=Physo141671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010084;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 285803 287288 . - . ID=Physo141671;Parent=Physo141671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 285803 286084 . - 0 ID=Physo141671;Parent=Physo141671;rank=4 scaffold_101 . exon 285803 286084 . - . ID=Physo141671.4;Parent=Physo141671;constitutive=1;rank=4 scaffold_101 . CDS 286465 287059 . - 0 ID=Physo141671;Parent=Physo141671;rank=3 scaffold_101 . exon 286465 287059 . - . ID=Physo141671.3;Parent=Physo141671;constitutive=1;ensembl_phase=2;rank=3 scaffold_101 . CDS 287120 287185 . - 0 ID=Physo141671;Parent=Physo141671;rank=2 scaffold_101 . exon 287120 287185 . - . ID=Physo141671.2;Parent=Physo141671;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_101 . CDS 287248 287288 . - 0 ID=Physo141671;Parent=Physo141671;rank=1 scaffold_101 . exon 287248 287288 . - . ID=Physo141671.1;Parent=Physo141671;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_101 ensembl protein_coding_gene 287801 289055 . + . ID=Physo141672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010085;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 287801 289055 . + . ID=Physo141672;Parent=Physo141672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 287801 288082 . + 0 ID=Physo141672;Parent=Physo141672;rank=1 scaffold_101 . exon 287801 288082 . + . ID=Physo141672.1;Parent=Physo141672;constitutive=1;rank=1 scaffold_101 . CDS 288153 288278 . + 0 ID=Physo141672;Parent=Physo141672;rank=2 scaffold_101 . exon 288153 288278 . + . ID=Physo141672.2;Parent=Physo141672;constitutive=1;rank=2 scaffold_101 . CDS 288352 288471 . + 0 ID=Physo141672;Parent=Physo141672;rank=3 scaffold_101 . exon 288352 288471 . + . ID=Physo141672.3;Parent=Physo141672;constitutive=1;rank=3 scaffold_101 . CDS 288550 288675 . + 0 ID=Physo141672;Parent=Physo141672;rank=4 scaffold_101 . exon 288550 288675 . + . ID=Physo141672.4;Parent=Physo141672;constitutive=1;rank=4 scaffold_101 . CDS 288747 289055 . + 0 ID=Physo141672;Parent=Physo141672;rank=5 scaffold_101 . exon 288747 289055 . + . ID=Physo141672.5;Parent=Physo141672;constitutive=1;rank=5 scaffold_101 ensembl protein_coding_gene 289100 290135 . - . ID=Physo141673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010086;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 289100 290135 . - . ID=Physo141673;Parent=Physo141673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . exon 289100 290135 . - . ID=Physo141673.1;Parent=Physo141673;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_101 . CDS 289143 290135 . - 0 ID=Physo141673;Parent=Physo141673;rank=1 scaffold_101 ensembl protein_coding_gene 290932 291554 . - . ID=Physo141674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010087;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 290932 291554 . - . ID=Physo141674;Parent=Physo141674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 290932 291339 . - 0 ID=Physo141674;Parent=Physo141674;rank=2 scaffold_101 . exon 290932 291339 . - . ID=Physo141674.2;Parent=Physo141674;constitutive=1;rank=2 scaffold_101 . CDS 291360 291554 . - 0 ID=Physo141674;Parent=Physo141674;rank=1 scaffold_101 . exon 291360 291554 . - . ID=Physo141674.1;Parent=Physo141674;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 293483 296559 . + . ID=Physo141675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010088;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 293483 296559 . + . ID=Physo141675;Parent=Physo141675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 293483 296080 . + 0 ID=Physo141675;Parent=Physo141675;rank=1 scaffold_101 . exon 293483 296080 . + . ID=Physo141675.1;Parent=Physo141675;constitutive=1;rank=1 scaffold_101 . CDS 296140 296559 . + 0 ID=Physo141675;Parent=Physo141675;rank=2 scaffold_101 . exon 296140 296559 . + . ID=Physo141675.2;Parent=Physo141675;constitutive=1;rank=2 scaffold_101 ensembl protein_coding_gene 297801 299615 . - . ID=Physo141676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010089;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 297801 299615 . - . ID=Physo141676;Parent=Physo141676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 297801 299615 . - 0 ID=Physo141676;Parent=Physo141676;rank=1 scaffold_101 . exon 297801 299615 . - . ID=Physo141676.1;Parent=Physo141676;constitutive=1;rank=1 scaffold_101 ensembl protein_coding_gene 301876 302498 . + . ID=Physo141677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1010090;logic_name=jgi_physo1_1 scaffold_101 ensembl transcript 301876 302498 . + . ID=Physo141677;Parent=Physo141677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_101 . CDS 301876 302496 . + 0 ID=Physo141677;Parent=Physo141677;rank=1 scaffold_101 . exon 301876 302498 . + . ID=Physo141677.1;Parent=Physo141677;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_100 1 303786 scaffold_100 . biological_region 4066 4067 0.999 - . logic_name=eponine scaffold_100 . biological_region 4929 4931 0.999 + . logic_name=eponine scaffold_100 . biological_region 4978 4981 0.999 + . logic_name=eponine scaffold_100 . repeat_region 5222 6307 . + . description=GypsyPi-1c_I-int scaffold_100 . biological_region 6383 6387 0.999 + . logic_name=eponine scaffold_100 . repeat_region 6876 7198 . + . description=GypsyPi-1c_I-int scaffold_100 . biological_region 6942 6948 0.999 - . logic_name=eponine scaffold_100 . repeat_region 7320 7502 . + . description=GypsyPi-1c_LTR scaffold_100 ensembl protein_coding_gene 2233 3099 . + . ID=Physo141515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000001;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 2233 3099 . + . ID=Physo141515;Parent=Physo141515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 2233 3099 . + 0 ID=Physo141515;Parent=Physo141515;rank=1 scaffold_100 . exon 2233 3099 . + . ID=Physo141515.1;Parent=Physo141515;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 4821 7012 . - . ID=Physo141516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000002;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 4821 7012 . - . ID=Physo141516;Parent=Physo141516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 4821 5378 . - 0 ID=Physo141516;Parent=Physo141516;rank=3 scaffold_100 . exon 4821 5378 . - . ID=Physo141516.3;Parent=Physo141516;constitutive=1;rank=3 scaffold_100 . CDS 5622 5890 . - 0 ID=Physo141516;Parent=Physo141516;rank=2 scaffold_100 . exon 5622 5890 . - . ID=Physo141516.2;Parent=Physo141516;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 5929 7012 . - 0 ID=Physo141516;Parent=Physo141516;rank=1 scaffold_100 . exon 5929 7012 . - . ID=Physo141516.1;Parent=Physo141516;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 ensembl protein_coding_gene 9157 9840 . + . ID=Physo141517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000003;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 9157 9840 . + . ID=Physo141517;Parent=Physo141517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 9157 9840 . + 0 ID=Physo141517;Parent=Physo141517;rank=1 scaffold_100 . exon 9157 9840 . + . ID=Physo141517.1;Parent=Physo141517;constitutive=1;rank=1 scaffold_100 . repeat_region 13548 13621 . ? . description=trf scaffold_100 . repeat_region 15062 15069 . ? . description=dust scaffold_100 . repeat_region 19357 19364 . ? . description=dust scaffold_100 ensembl protein_coding_gene 15162 17263 . - . ID=Physo141518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000004;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 15162 17263 . - . ID=Physo141518;Parent=Physo141518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 15162 15284 . - 0 ID=Physo141518;Parent=Physo141518;rank=3 scaffold_100 . exon 15162 15284 . - . ID=Physo141518.3;Parent=Physo141518;constitutive=1;rank=3 scaffold_100 . CDS 15316 16347 . - 0 ID=Physo141518;Parent=Physo141518;rank=2 scaffold_100 . exon 15316 16347 . - . ID=Physo141518.2;Parent=Physo141518;constitutive=1;rank=2 scaffold_100 . CDS 16406 17263 . - 0 ID=Physo141518;Parent=Physo141518;rank=1 scaffold_100 . exon 16406 17263 . - . ID=Physo141518.1;Parent=Physo141518;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 17945 18316 . - . ID=Physo141519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000005;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 17945 18316 . - . ID=Physo141519;Parent=Physo141519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 17945 18316 . - 0 ID=Physo141519;Parent=Physo141519;rank=1 scaffold_100 . exon 17945 18316 . - . ID=Physo141519.1;Parent=Physo141519;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 19474 21723 . - . ID=Physo141520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000006;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 19474 21723 . - . ID=Physo141520;Parent=Physo141520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 19474 21723 . - 0 ID=Physo141520;Parent=Physo141520;rank=1 scaffold_100 . exon 19474 21723 . - . ID=Physo141520.1;Parent=Physo141520;constitutive=1;rank=1 scaffold_100 . repeat_region 23401 23684 . + . description=GypsyPi-1c_LTR scaffold_100 . repeat_region 23685 25881 . + . description=GypsyPi-1c_I-int scaffold_100 . biological_region 24188 24190 0.999 + . logic_name=eponine scaffold_100 . repeat_region 26737 26814 . + . description=GypsyPi-1c_I-int scaffold_100 . repeat_region 28243 28548 . + . description=GypsyPi-1c_LTR scaffold_100 ensembl protein_coding_gene 23772 24497 . + . ID=Physo141521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000007;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 23772 24497 . + . ID=Physo141521;Parent=Physo141521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 23772 24497 . + 0 ID=Physo141521;Parent=Physo141521;rank=1 scaffold_100 . exon 23772 24497 . + . ID=Physo141521.1;Parent=Physo141521;constitutive=1;rank=1 scaffold_100 . repeat_region 31768 31789 . ? . description=trf scaffold_100 . repeat_region 34769 34777 . ? . description=dust scaffold_100 . repeat_region 37023 37065 . ? . description=dust scaffold_100 . repeat_region 38200 38230 . ? . description=dust scaffold_100 . repeat_region 39154 39178 . ? . description=trf scaffold_100 ensembl protein_coding_gene 31587 33161 . + . ID=Physo141522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000008;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 31587 33161 . + . ID=Physo141522;Parent=Physo141522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 31587 33161 . + 0 ID=Physo141522;Parent=Physo141522;rank=1 scaffold_100 . exon 31587 33161 . + . ID=Physo141522.1;Parent=Physo141522;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 33960 34361 . - . ID=Physo158356;biotype=protein_coding;external_name=C_scaffold_100000001;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 33960 34361 . - . ID=Physo158356;Parent=Physo158356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 33960 34361 . - 0 ID=Physo158356;Parent=Physo158356;rank=1 scaffold_100 . exon 33960 34361 . - . ID=Physo158356.1;Parent=Physo158356;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 35626 42549 . - . ID=Physo158357;biotype=protein_coding;external_name=C_scaffold_100000002;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 35626 42549 . - . ID=Physo158357;Parent=Physo158357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 35626 35712 . - 0 ID=Physo158357;Parent=Physo158357;rank=11 scaffold_100 . exon 35626 35712 . - . ID=Physo158357.11;Parent=Physo158357;constitutive=1;rank=11 scaffold_100 . CDS 35773 36312 . - 0 ID=Physo158357;Parent=Physo158357;rank=10 scaffold_100 . exon 35773 36312 . - . ID=Physo158357.10;Parent=Physo158357;constitutive=1;rank=10 scaffold_100 . CDS 36409 36719 . - 0 ID=Physo158357;Parent=Physo158357;rank=9 scaffold_100 . exon 36409 36719 . - . ID=Physo158357.9;Parent=Physo158357;constitutive=1;ensembl_phase=1;rank=9 scaffold_100 . CDS 36936 37658 . - 0 ID=Physo158357;Parent=Physo158357;rank=8 scaffold_100 . exon 36936 37658 . - . ID=Physo158357.8;Parent=Physo158357;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_100 . CDS 37701 37986 . - 0 ID=Physo158357;Parent=Physo158357;rank=7 scaffold_100 . exon 37701 37986 . - . ID=Physo158357.7;Parent=Physo158357;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_100 . CDS 38059 38739 . - 0 ID=Physo158357;Parent=Physo158357;rank=6 scaffold_100 . exon 38059 38739 . - . ID=Physo158357.6;Parent=Physo158357;constitutive=1;rank=6 scaffold_100 . CDS 38869 38906 . - 0 ID=Physo158357;Parent=Physo158357;rank=5 scaffold_100 . exon 38869 38906 . - . ID=Physo158357.5;Parent=Physo158357;constitutive=1;ensembl_phase=1;rank=5 scaffold_100 . CDS 39546 39839 . - 0 ID=Physo158357;Parent=Physo158357;rank=4 scaffold_100 . CDS 39879 40400 . - 0 ID=Physo158357;Parent=Physo158357;rank=3 scaffold_100 . CDS 40449 40627 . - 0 ID=Physo158357;Parent=Physo158357;rank=2 scaffold_100 . CDS 41237 42549 . - 0 ID=Physo158357;Parent=Physo158357;rank=1 scaffold_100 . biological_region 41960 41968 0.999 - . logic_name=eponine scaffold_100 . biological_region 42019 42025 0.999 + . logic_name=eponine scaffold_100 . biological_region 42034 42036 0.999 - . logic_name=eponine scaffold_100 . biological_region 42472 42474 0.999 - . logic_name=eponine scaffold_100 . biological_region 42522 42527 0.999 - . logic_name=eponine scaffold_100 . biological_region 43041 43046 0.999 - . logic_name=eponine scaffold_100 ensembl protein_coding_gene 42734 45985 . - . ID=Physo141526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000012;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 42734 45985 . - . ID=Physo141526;Parent=Physo141526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 42734 43359 . - 0 ID=Physo141526;Parent=Physo141526;rank=4 scaffold_100 . exon 42734 43359 . - . ID=Physo141526.4;Parent=Physo141526;constitutive=1;ensembl_phase=1;rank=4 scaffold_100 . CDS 43384 44149 . - 0 ID=Physo141526;Parent=Physo141526;rank=3 scaffold_100 . exon 43384 44149 . - . ID=Physo141526.3;Parent=Physo141526;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_100 . CDS 44216 45081 . - 0 ID=Physo141526;Parent=Physo141526;rank=2 scaffold_100 . exon 44216 45081 . - . ID=Physo141526.2;Parent=Physo141526;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 45271 45985 . - 0 ID=Physo141526;Parent=Physo141526;rank=1 scaffold_100 . exon 45271 45985 . - . ID=Physo141526.1;Parent=Physo141526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 ensembl protein_coding_gene 46503 47615 . + . ID=Physo141527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000013;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 46503 47615 . + . ID=Physo141527;Parent=Physo141527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 46503 47615 . + 0 ID=Physo141527;Parent=Physo141527;rank=1 scaffold_100 . exon 46503 47615 . + . ID=Physo141527.1;Parent=Physo141527;constitutive=1;rank=1 scaffold_100 . exon 39546 39839 . - . ID=Physo158357.4;Parent=Physo158357;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_100 . exon 39879 40400 . - . ID=Physo158357.3;Parent=Physo158357;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_100 . exon 40449 40627 . - . ID=Physo158357.2;Parent=Physo158357;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_100 . exon 41237 42549 . - . ID=Physo158357.1;Parent=Physo158357;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 . repeat_region 52053 52060 . ? . description=dust scaffold_100 . repeat_region 56872 56879 . ? . description=dust scaffold_100 ensembl protein_coding_gene 51304 51989 . + . ID=Physo141528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000014;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 51304 51989 . + . ID=Physo141528;Parent=Physo141528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . exon 51304 51989 . + . ID=Physo141528.1;Parent=Physo141528;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_100 . CDS 51359 51937 . + 0 ID=Physo141528;Parent=Physo141528;rank=1 scaffold_100 ensembl protein_coding_gene 52131 53153 . - . ID=Physo141529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000015;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 52131 53153 . - . ID=Physo141529;Parent=Physo141529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 52131 53153 . - 0 ID=Physo141529;Parent=Physo141529;rank=1 scaffold_100 . exon 52131 53153 . - . ID=Physo141529.1;Parent=Physo141529;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 54638 55879 . - . ID=Physo141530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000016;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 54638 55879 . - . ID=Physo141530;Parent=Physo141530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 54638 55879 . - 0 ID=Physo141530;Parent=Physo141530;rank=1 scaffold_100 . exon 54638 55879 . - . ID=Physo141530.1;Parent=Physo141530;constitutive=1;rank=1 scaffold_100 . repeat_region 59343 59370 . ? . description=trf scaffold_100 . repeat_region 60553 66369 . + . description=Sola3-1_PS scaffold_100 . repeat_region 65913 65951 . ? . description=trf scaffold_100 . repeat_region 72590 72599 . ? . description=dust scaffold_100 . repeat_region 72740 72881 . ? . description=dust scaffold_100 . biological_region 73647 73653 0.999 + . logic_name=eponine scaffold_100 . biological_region 73689 73691 0.999 - . logic_name=eponine scaffold_100 . biological_region 73758 73763 0.999 - . logic_name=eponine scaffold_100 ensembl protein_coding_gene 70327 71541 . - . ID=Physo141531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000017;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 70327 71541 . - . ID=Physo141531;Parent=Physo141531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 70327 71541 . - 0 ID=Physo141531;Parent=Physo141531;rank=1 scaffold_100 . exon 70327 71541 . - . ID=Physo141531.1;Parent=Physo141531;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 74075 75258 . - . ID=Physo141532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000018;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 74075 75258 . - . ID=Physo141532;Parent=Physo141532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 74075 74468 . - 0 ID=Physo141532;Parent=Physo141532;rank=4 scaffold_100 . exon 74075 74468 . - . ID=Physo141532.4;Parent=Physo141532;constitutive=1;ensembl_phase=2;rank=4 scaffold_100 . CDS 74509 74590 . - 0 ID=Physo141532;Parent=Physo141532;rank=3 scaffold_100 . exon 74509 74590 . - . ID=Physo141532.3;Parent=Physo141532;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_100 . CDS 74657 74689 . - 0 ID=Physo141532;Parent=Physo141532;rank=2 scaffold_100 . exon 74657 74689 . - . ID=Physo141532.2;Parent=Physo141532;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 74754 75258 . - 0 ID=Physo141532;Parent=Physo141532;rank=1 scaffold_100 . exon 74754 75258 . - . ID=Physo141532.1;Parent=Physo141532;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 ensembl protein_coding_gene 77433 78404 . + . ID=Physo141533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000019;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 77433 78404 . + . ID=Physo141533;Parent=Physo141533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 77433 78404 . + 0 ID=Physo141533;Parent=Physo141533;rank=1 scaffold_100 . exon 77433 78404 . + . ID=Physo141533.1;Parent=Physo141533;constitutive=1;rank=1 scaffold_100 . repeat_region 84942 84961 . ? . description=trf scaffold_100 . repeat_region 85534 85554 . ? . description=trf scaffold_100 ensembl protein_coding_gene 80289 81506 . + . ID=Physo141534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000020;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 80289 81506 . + . ID=Physo141534;Parent=Physo141534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 80289 81506 . + 0 ID=Physo141534;Parent=Physo141534;rank=1 scaffold_100 . exon 80289 81506 . + . ID=Physo141534.1;Parent=Physo141534;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 84848 86146 . + . ID=Physo141535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000021;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 84848 86146 . + . ID=Physo141535;Parent=Physo141535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 84848 86146 . + 0 ID=Physo141535;Parent=Physo141535;rank=1 scaffold_100 . exon 84848 86146 . + . ID=Physo141535.1;Parent=Physo141535;constitutive=1;rank=1 scaffold_100 . biological_region 90317 90319 0.999 + . logic_name=eponine scaffold_100 . biological_region 90334 90340 0.999 + . logic_name=eponine scaffold_100 . biological_region 90448 90452 0.999 - . logic_name=eponine scaffold_100 . biological_region 90504 90505 0.999 + . logic_name=eponine scaffold_100 . biological_region 90737 90738 0.999 + . logic_name=eponine scaffold_100 . biological_region 91102 91109 0.999 - . logic_name=eponine scaffold_100 . biological_region 91489 91494 0.999 + . logic_name=eponine scaffold_100 . repeat_region 92258 92272 . ? . description=dust scaffold_100 . repeat_region 92285 92292 . ? . description=dust scaffold_100 . repeat_region 92590 92604 . ? . description=dust scaffold_100 . biological_region 92627 92627 0.999 + . logic_name=eponine scaffold_100 . biological_region 95404 95405 0.999 + . logic_name=eponine scaffold_100 ensembl protein_coding_gene 90141 92085 . + . ID=Physo141536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000022;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 90141 92085 . + . ID=Physo141536;Parent=Physo141536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 90141 90296 . + 0 ID=Physo141536;Parent=Physo141536;rank=1 scaffold_100 . exon 90141 90296 . + . ID=Physo141536.1;Parent=Physo141536;constitutive=1;rank=1 scaffold_100 . CDS 90454 90579 . + 0 ID=Physo141536;Parent=Physo141536;rank=2 scaffold_100 . exon 90454 90579 . + . ID=Physo141536.2;Parent=Physo141536;constitutive=1;rank=2 scaffold_100 . CDS 90678 91337 . + 0 ID=Physo141536;Parent=Physo141536;rank=3 scaffold_100 . exon 90678 91337 . + . ID=Physo141536.3;Parent=Physo141536;constitutive=1;rank=3 scaffold_100 . CDS 91435 92085 . + 0 ID=Physo141536;Parent=Physo141536;rank=4 scaffold_100 . exon 91435 92085 . + . ID=Physo141536.4;Parent=Physo141536;constitutive=1;rank=4 scaffold_100 ensembl protein_coding_gene 92375 93803 . - . ID=Physo141537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000023;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 92375 93803 . - . ID=Physo141537;Parent=Physo141537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 92375 92582 . - 0 ID=Physo141537;Parent=Physo141537;rank=3 scaffold_100 . exon 92375 92582 . - . ID=Physo141537.3;Parent=Physo141537;constitutive=1;ensembl_phase=2;rank=3 scaffold_100 . CDS 92690 93495 . - 0 ID=Physo141537;Parent=Physo141537;rank=2 scaffold_100 . exon 92690 93495 . - . ID=Physo141537.2;Parent=Physo141537;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_100 . CDS 93579 93803 . - 0 ID=Physo141537;Parent=Physo141537;rank=1 scaffold_100 . exon 93579 93803 . - . ID=Physo141537.1;Parent=Physo141537;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 95070 99562 . + . ID=Physo141538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000024;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 95070 99562 . + . ID=Physo141538;Parent=Physo141538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 95070 95240 . + 0 ID=Physo141538;Parent=Physo141538;rank=1 scaffold_100 . exon 95070 95240 . + . ID=Physo141538.1;Parent=Physo141538;constitutive=1;rank=1 scaffold_100 . CDS 95301 95495 . + 0 ID=Physo141538;Parent=Physo141538;rank=2 scaffold_100 . exon 95301 95495 . + . ID=Physo141538.2;Parent=Physo141538;constitutive=1;rank=2 scaffold_100 . CDS 95589 96348 . + 0 ID=Physo141538;Parent=Physo141538;rank=3 scaffold_100 . exon 95589 96348 . + . ID=Physo141538.3;Parent=Physo141538;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_100 . CDS 96629 96843 . + 0 ID=Physo141538;Parent=Physo141538;rank=4 scaffold_100 . exon 96629 96843 . + . ID=Physo141538.4;Parent=Physo141538;constitutive=1;ensembl_phase=1;rank=4 scaffold_100 . CDS 96912 97106 . + 0 ID=Physo141538;Parent=Physo141538;rank=5 scaffold_100 . exon 96912 97106 . + . ID=Physo141538.5;Parent=Physo141538;constitutive=1;rank=5 scaffold_100 . CDS 97174 97781 . + 0 ID=Physo141538;Parent=Physo141538;rank=6 scaffold_100 . exon 97174 97781 . + . ID=Physo141538.6;Parent=Physo141538;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_100 . CDS 97849 97919 . + 0 ID=Physo141538;Parent=Physo141538;rank=7 scaffold_100 . exon 97849 97919 . + . ID=Physo141538.7;Parent=Physo141538;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_100 . CDS 98102 98343 . + 0 ID=Physo141538;Parent=Physo141538;rank=8 scaffold_100 . CDS 98446 98640 . + 0 ID=Physo141538;Parent=Physo141538;rank=9 scaffold_100 . CDS 98714 99562 . + 0 ID=Physo141538;Parent=Physo141538;rank=10 scaffold_100 . repeat_region 97999 98076 . ? . description=trf scaffold_100 . repeat_region 98060 98084 . ? . description=trf scaffold_100 . exon 98102 98343 . + . ID=Physo141538.8;Parent=Physo141538;constitutive=1;ensembl_phase=1;rank=8 scaffold_100 . exon 98446 98640 . + . ID=Physo141538.9;Parent=Physo141538;constitutive=1;rank=9 scaffold_100 . exon 98714 99562 . + . ID=Physo141538.10;Parent=Physo141538;constitutive=1;rank=10 scaffold_100 ensembl protein_coding_gene 99957 101385 . + . ID=Physo141539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000025;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 99957 101385 . + . ID=Physo141539;Parent=Physo141539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 99957 100160 . + 0 ID=Physo141539;Parent=Physo141539;rank=1 scaffold_100 . exon 99957 100160 . + . ID=Physo141539.1;Parent=Physo141539;constitutive=1;rank=1 scaffold_100 . CDS 100234 100428 . + 0 ID=Physo141539;Parent=Physo141539;rank=2 scaffold_100 . exon 100234 100428 . + . ID=Physo141539.2;Parent=Physo141539;constitutive=1;rank=2 scaffold_100 . CDS 100507 101385 . + 0 ID=Physo141539;Parent=Physo141539;rank=3 scaffold_100 . exon 100507 101385 . + . ID=Physo141539.3;Parent=Physo141539;constitutive=1;rank=3 scaffold_100 ensembl protein_coding_gene 102011 103462 . + . ID=Physo141540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000026;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 102011 103462 . + . ID=Physo141540;Parent=Physo141540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . exon 102011 102981 . + . ID=Physo141540.1;Parent=Physo141540;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_100 . CDS 102030 102981 . + 0 ID=Physo141540;Parent=Physo141540;rank=1 scaffold_100 . CDS 103012 103358 . + 0 ID=Physo141540;Parent=Physo141540;rank=2 scaffold_100 . exon 103012 103358 . + . ID=Physo141540.2;Parent=Physo141540;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 103418 103462 . + 0 ID=Physo141540;Parent=Physo141540;rank=3 scaffold_100 . exon 103418 103462 . + . ID=Physo141540.3;Parent=Physo141540;constitutive=1;rank=3 scaffold_100 ensembl protein_coding_gene 103583 105351 . - . ID=Physo141541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000027;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 103583 105351 . - . ID=Physo141541;Parent=Physo141541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . exon 103583 104563 . - . ID=Physo141541.3;Parent=Physo141541;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_100 . CDS 103685 104563 . - 0 ID=Physo141541;Parent=Physo141541;rank=3 scaffold_100 . CDS 104632 104850 . - 0 ID=Physo141541;Parent=Physo141541;rank=2 scaffold_100 . exon 104632 104850 . - . ID=Physo141541.2;Parent=Physo141541;constitutive=1;rank=2 scaffold_100 . CDS 104932 105351 . - 0 ID=Physo141541;Parent=Physo141541;rank=1 scaffold_100 . exon 104932 105351 . - . ID=Physo141541.1;Parent=Physo141541;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 106691 107801 . - . ID=Physo141542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000028;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 106691 107801 . - . ID=Physo141542;Parent=Physo141542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 106691 107373 . - 0 ID=Physo141542;Parent=Physo141542;rank=3 scaffold_100 . exon 106691 107373 . - . ID=Physo141542.3;Parent=Physo141542;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 107418 107556 . - 0 ID=Physo141542;Parent=Physo141542;rank=2 scaffold_100 . exon 107418 107556 . - . ID=Physo141542.2;Parent=Physo141542;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_100 . CDS 107643 107801 . - 0 ID=Physo141542;Parent=Physo141542;rank=1 scaffold_100 . exon 107643 107801 . - . ID=Physo141542.1;Parent=Physo141542;constitutive=1;rank=1 scaffold_100 . biological_region 108604 108606 0.999 + . logic_name=eponine scaffold_100 . biological_region 110345 110347 0.999 + . logic_name=eponine scaffold_100 . biological_region 112669 112672 0.999 + . logic_name=eponine scaffold_100 . biological_region 112873 112875 0.999 - . logic_name=eponine scaffold_100 . biological_region 114005 114011 0.999 - . logic_name=eponine scaffold_100 . biological_region 114629 114631 0.999 + . logic_name=eponine scaffold_100 . biological_region 114676 114678 0.999 - . logic_name=eponine scaffold_100 . biological_region 114730 114733 0.999 + . logic_name=eponine scaffold_100 . biological_region 114755 114761 0.999 - . logic_name=eponine scaffold_100 . biological_region 114814 114817 0.999 + . logic_name=eponine scaffold_100 . biological_region 115168 115168 0.999 + . logic_name=eponine scaffold_100 . biological_region 115207 115211 0.999 - . logic_name=eponine scaffold_100 . biological_region 115256 115259 0.999 - . logic_name=eponine scaffold_100 . biological_region 116608 116613 0.999 + . logic_name=eponine scaffold_100 . biological_region 116970 116974 0.999 + . logic_name=eponine scaffold_100 ensembl protein_coding_gene 108543 109103 . - . ID=Physo141543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000029;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 108543 109103 . - . ID=Physo141543;Parent=Physo141543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 108543 109103 . - 0 ID=Physo141543;Parent=Physo141543;rank=1 scaffold_100 . exon 108543 109103 . - . ID=Physo141543.1;Parent=Physo141543;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 110284 112899 . - . ID=Physo141544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000030;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 110284 112899 . - . ID=Physo141544;Parent=Physo141544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 110284 112899 . - 0 ID=Physo141544;Parent=Physo141544;rank=1 scaffold_100 . exon 110284 112899 . - . ID=Physo141544.1;Parent=Physo141544;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 113681 114265 . - . ID=Physo141545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000031;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 113681 114265 . - . ID=Physo141545;Parent=Physo141545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 113681 114265 . - 0 ID=Physo141545;Parent=Physo141545;rank=1 scaffold_100 . exon 113681 114265 . - . ID=Physo141545.1;Parent=Physo141545;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 117263 118844 . - . ID=Physo141546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000032;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 117263 118844 . - . ID=Physo141546;Parent=Physo141546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 117263 118180 . - 0 ID=Physo141546;Parent=Physo141546;rank=2 scaffold_100 . exon 117263 118180 . - . ID=Physo141546.2;Parent=Physo141546;constitutive=1;rank=2 scaffold_100 . CDS 118255 118812 . - 0 ID=Physo141546;Parent=Physo141546;rank=1 scaffold_100 . repeat_region 119060 119092 . ? . description=dust scaffold_100 . repeat_region 123650 123672 . ? . description=trf scaffold_100 . repeat_region 123650 123722 . ? . description=dust scaffold_100 . repeat_region 124006 124021 . ? . description=dust scaffold_100 . repeat_region 125175 125236 . ? . description=dust scaffold_100 ensembl protein_coding_gene 119027 121182 . + . ID=Physo109404;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1000001;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 119027 121182 . + . ID=Physo109404;Parent=Physo109404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . exon 119027 119243 . + . ID=Physo109404.1;Parent=Physo109404;constitutive=1;ensembl_phase=-1;rank=1 scaffold_100 . CDS 119031 119243 . + 0 ID=Physo109404;Parent=Physo109404;rank=1 scaffold_100 . CDS 119350 120709 . + 0 ID=Physo109404;Parent=Physo109404;rank=2 scaffold_100 . exon 119350 120709 . + . ID=Physo109404.2;Parent=Physo109404;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_100 . CDS 120782 121182 . + 0 ID=Physo109404;Parent=Physo109404;rank=3 scaffold_100 . exon 120782 121182 . + . ID=Physo109404.3;Parent=Physo109404;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . exon 118255 118844 . - . ID=Physo141546.1;Parent=Physo141546;constitutive=1;ensembl_phase=-1;rank=1 scaffold_100 ensembl protein_coding_gene 121311 121958 . - . ID=Physo141548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000034;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 121311 121958 . - . ID=Physo141548;Parent=Physo141548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 121311 121958 . - 0 ID=Physo141548;Parent=Physo141548;rank=1 scaffold_100 . exon 121311 121958 . - . ID=Physo141548.1;Parent=Physo141548;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 124066 125258 . - . ID=Physo141549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000035;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 124066 125258 . - . ID=Physo141549;Parent=Physo141549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . exon 124066 125258 . - . ID=Physo141549.1;Parent=Physo141549;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_100 . CDS 124089 125174 . - 0 ID=Physo141549;Parent=Physo141549;rank=1 scaffold_100 ensembl protein_coding_gene 125877 128049 . + . ID=Physo141550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000036;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 125877 128049 . + . ID=Physo141550;Parent=Physo141550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 125877 127976 . + 0 ID=Physo141550;Parent=Physo141550;rank=1 scaffold_100 . exon 125877 128049 . + . ID=Physo141550.1;Parent=Physo141550;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_100 . biological_region 133539 133542 0.999 - . logic_name=eponine scaffold_100 . biological_region 134538 134541 0.999 + . logic_name=eponine scaffold_100 ensembl protein_coding_gene 133082 134360 . + . ID=Physo141551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000037;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 133082 134360 . + . ID=Physo141551;Parent=Physo141551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 133082 133159 . + 0 ID=Physo141551;Parent=Physo141551;rank=1 scaffold_100 . exon 133082 133159 . + . ID=Physo141551.1;Parent=Physo141551;constitutive=1;rank=1 scaffold_100 . CDS 133245 133908 . + 0 ID=Physo141551;Parent=Physo141551;rank=2 scaffold_100 . exon 133245 133908 . + . ID=Physo141551.2;Parent=Physo141551;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_100 . CDS 133980 134248 . + 0 ID=Physo141551;Parent=Physo141551;rank=3 scaffold_100 . exon 133980 134248 . + . ID=Physo141551.3;Parent=Physo141551;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 134313 134360 . + 0 ID=Physo141551;Parent=Physo141551;rank=4 scaffold_100 . exon 134313 134360 . + . ID=Physo141551.4;Parent=Physo141551;constitutive=1;rank=4 scaffold_100 ensembl protein_coding_gene 136421 137779 . + . ID=Physo141552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000038;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 136421 137779 . + . ID=Physo141552;Parent=Physo141552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 136421 137779 . + 0 ID=Physo141552;Parent=Physo141552;rank=1 scaffold_100 . exon 136421 137779 . + . ID=Physo141552.1;Parent=Physo141552;constitutive=1;rank=1 scaffold_100 . repeat_region 140108 140162 . ? . description=trf scaffold_100 . repeat_region 140306 140359 . ? . description=trf scaffold_100 . repeat_region 140658 140669 . ? . description=dust scaffold_100 . repeat_region 142458 142506 . ? . description=trf scaffold_100 . repeat_region 142963 142994 . ? . description=dust scaffold_100 . repeat_region 146870 146877 . ? . description=dust scaffold_100 ensembl protein_coding_gene 139224 139940 . + . ID=Physo141553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000039;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 139224 139940 . + . ID=Physo141553;Parent=Physo141553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 139224 139940 . + 0 ID=Physo141553;Parent=Physo141553;rank=1 scaffold_100 . exon 139224 139940 . + . ID=Physo141553.1;Parent=Physo141553;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 145440 145838 . + . ID=Physo141554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000040;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 145440 145838 . + . ID=Physo141554;Parent=Physo141554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 145440 145838 . + 0 ID=Physo141554;Parent=Physo141554;rank=1 scaffold_100 . exon 145440 145838 . + . ID=Physo141554.1;Parent=Physo141554;constitutive=1;rank=1 scaffold_100 . biological_region 147001 147002 0.999 + . logic_name=eponine scaffold_100 . biological_region 153309 153311 0.999 + . logic_name=eponine scaffold_100 ensembl protein_coding_gene 149350 150230 . - . ID=Physo141555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000041;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 149350 150230 . - . ID=Physo141555;Parent=Physo141555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 149350 149573 . - 0 ID=Physo141555;Parent=Physo141555;rank=3 scaffold_100 . exon 149350 149573 . - . ID=Physo141555.3;Parent=Physo141555;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 149793 150015 . - 0 ID=Physo141555;Parent=Physo141555;rank=2 scaffold_100 . exon 149793 150015 . - . ID=Physo141555.2;Parent=Physo141555;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_100 . CDS 150141 150230 . - 0 ID=Physo141555;Parent=Physo141555;rank=1 scaffold_100 . exon 150141 150230 . - . ID=Physo141555.1;Parent=Physo141555;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 151039 153426 . - . ID=Physo141556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000042;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 151039 153426 . - . ID=Physo141556;Parent=Physo141556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 151039 151268 . - 0 ID=Physo141556;Parent=Physo141556;rank=4 scaffold_100 . exon 151039 151268 . - . ID=Physo141556.4;Parent=Physo141556;constitutive=1;ensembl_phase=1;rank=4 scaffold_100 . CDS 151392 151540 . - 0 ID=Physo141556;Parent=Physo141556;rank=3 scaffold_100 . exon 151392 151540 . - . ID=Physo141556.3;Parent=Physo141556;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_100 . CDS 151806 152186 . - 0 ID=Physo141556;Parent=Physo141556;rank=2 scaffold_100 . exon 151806 152186 . - . ID=Physo141556.2;Parent=Physo141556;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_100 . CDS 152261 153426 . - 0 ID=Physo141556;Parent=Physo141556;rank=1 scaffold_100 . exon 152261 153426 . - . ID=Physo141556.1;Parent=Physo141556;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 ensembl protein_coding_gene 156236 156784 . + . ID=Physo141557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000043;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 156236 156784 . + . ID=Physo141557;Parent=Physo141557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 156236 156784 . + 0 ID=Physo141557;Parent=Physo141557;rank=1 scaffold_100 . exon 156236 156784 . + . ID=Physo141557.1;Parent=Physo141557;constitutive=1;rank=1 scaffold_100 . repeat_region 160913 160958 . ? . description=dust scaffold_100 . repeat_region 160914 160938 . ? . description=trf scaffold_100 . repeat_region 160914 160938 . ? . description=trf scaffold_100 . repeat_region 160939 160958 . ? . description=trf scaffold_100 ensembl protein_coding_gene 159741 160480 . - . ID=Physo109405;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1000002;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 159741 160480 . - . ID=Physo109405;Parent=Physo109405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 159741 160151 . - 0 ID=Physo109405;Parent=Physo109405;rank=3 scaffold_100 . exon 159741 160151 . - . ID=Physo109405.3;Parent=Physo109405;constitutive=1;rank=3 scaffold_100 . CDS 160255 160296 . - 0 ID=Physo109405;Parent=Physo109405;rank=2 scaffold_100 . exon 160255 160296 . - . ID=Physo109405.2;Parent=Physo109405;constitutive=1;rank=2 scaffold_100 . CDS 160406 160480 . - 0 ID=Physo109405;Parent=Physo109405;rank=1 scaffold_100 . exon 160406 160480 . - . ID=Physo109405.1;Parent=Physo109405;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 162496 164337 . + . ID=Physo141559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000045;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 162496 164337 . + . ID=Physo141559;Parent=Physo141559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 162496 164337 . + 0 ID=Physo141559;Parent=Physo141559;rank=1 scaffold_100 . exon 162496 164337 . + . ID=Physo141559.1;Parent=Physo141559;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 165479 167147 . + . ID=Physo141560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000046;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 165479 167147 . + . ID=Physo141560;Parent=Physo141560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 165479 165609 . + 0 ID=Physo141560;Parent=Physo141560;rank=1 scaffold_100 . exon 165479 165609 . + . ID=Physo141560.1;Parent=Physo141560;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 . CDS 165681 166144 . + 0 ID=Physo141560;Parent=Physo141560;rank=2 scaffold_100 . exon 165681 166144 . + . ID=Physo141560.2;Parent=Physo141560;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_100 . CDS 166237 167147 . + 0 ID=Physo141560;Parent=Physo141560;rank=3 scaffold_100 . exon 166237 167147 . + . ID=Physo141560.3;Parent=Physo141560;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . biological_region 166854 166856 0.999 - . logic_name=eponine scaffold_100 . biological_region 166882 166890 0.999 + . logic_name=eponine scaffold_100 . biological_region 166894 166897 0.999 + . logic_name=eponine scaffold_100 . biological_region 170263 170263 0.999 - . logic_name=eponine scaffold_100 . biological_region 171572 171575 0.999 - . logic_name=eponine scaffold_100 ensembl protein_coding_gene 171410 175290 . - . ID=Physo141561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000047;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 171410 175290 . - . ID=Physo141561;Parent=Physo141561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 171410 171856 . - 0 ID=Physo141561;Parent=Physo141561;rank=4 scaffold_100 . exon 171410 171856 . - . ID=Physo141561.4;Parent=Physo141561;constitutive=1;rank=4 scaffold_100 . CDS 172049 172110 . - 0 ID=Physo141561;Parent=Physo141561;rank=3 scaffold_100 . exon 172049 172110 . - . ID=Physo141561.3;Parent=Physo141561;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 172151 172350 . - 0 ID=Physo141561;Parent=Physo141561;rank=2 scaffold_100 . exon 172151 172350 . - . ID=Physo141561.2;Parent=Physo141561;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_100 . CDS 172553 175290 . - 0 ID=Physo141561;Parent=Physo141561;rank=1 scaffold_100 . exon 172553 175290 . - . ID=Physo141561.1;Parent=Physo141561;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 . repeat_region 176623 176785 . ? . description=trf scaffold_100 . repeat_region 177037 177044 . ? . description=dust scaffold_100 . repeat_region 177796 177803 . ? . description=dust scaffold_100 . repeat_region 179484 179517 . ? . description=trf scaffold_100 ensembl protein_coding_gene 183684 185059 . + . ID=Physo141562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000048;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 183684 185059 . + . ID=Physo141562;Parent=Physo141562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 183684 183762 . + 0 ID=Physo141562;Parent=Physo141562;rank=1 scaffold_100 . exon 183684 183762 . + . ID=Physo141562.1;Parent=Physo141562;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . CDS 183839 184467 . + 0 ID=Physo141562;Parent=Physo141562;rank=2 scaffold_100 . exon 183839 184467 . + . ID=Physo141562.2;Parent=Physo141562;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 184676 185059 . + 0 ID=Physo141562;Parent=Physo141562;rank=3 scaffold_100 . exon 184676 185059 . + . ID=Physo141562.3;Parent=Physo141562;constitutive=1;rank=3 scaffold_100 ensembl protein_coding_gene 185342 186532 . - . ID=Physo141563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000049;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 185342 186532 . - . ID=Physo141563;Parent=Physo141563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 185342 186532 . - 0 ID=Physo141563;Parent=Physo141563;rank=1 scaffold_100 . exon 185342 186532 . - . ID=Physo141563.1;Parent=Physo141563;constitutive=1;rank=1 scaffold_100 . biological_region 187771 187772 0.999 + . logic_name=eponine scaffold_100 ensembl protein_coding_gene 188294 188647 . - . ID=Physo141564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000050;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 188294 188647 . - . ID=Physo141564;Parent=Physo141564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 188294 188647 . - 0 ID=Physo141564;Parent=Physo141564;rank=1 scaffold_100 . exon 188294 188647 . - . ID=Physo141564.1;Parent=Physo141564;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 195685 197856 . - . ID=Physo141565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000051;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 195685 197856 . - . ID=Physo141565;Parent=Physo141565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 195685 195880 . - 0 ID=Physo141565;Parent=Physo141565;rank=3 scaffold_100 . exon 195685 195880 . - . ID=Physo141565.3;Parent=Physo141565;constitutive=1;ensembl_phase=2;rank=3 scaffold_100 . CDS 195951 197608 . - 0 ID=Physo141565;Parent=Physo141565;rank=2 scaffold_100 . exon 195951 197608 . - . ID=Physo141565.2;Parent=Physo141565;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_100 . CDS 197686 197856 . - 0 ID=Physo141565;Parent=Physo141565;rank=1 scaffold_100 . repeat_region 199186 199200 . ? . description=dust scaffold_100 . repeat_region 200119 200156 . ? . description=trf scaffold_100 . exon 197686 197856 . - . ID=Physo141565.1;Parent=Physo141565;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 199232 202108 . + . ID=Physo141566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000052;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 199232 202108 . + . ID=Physo141566;Parent=Physo141566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 199232 202069 . + 0 ID=Physo141566;Parent=Physo141566;rank=1 scaffold_100 . exon 199232 202108 . + . ID=Physo141566.1;Parent=Physo141566;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_100 ensembl protein_coding_gene 204224 211016 . - . ID=Physo141567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000053;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 204224 211016 . - . ID=Physo141567;Parent=Physo141567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 204224 205986 . - 0 ID=Physo141567;Parent=Physo141567;rank=4 scaffold_100 . exon 204224 205986 . - . ID=Physo141567.4;Parent=Physo141567;constitutive=1;ensembl_phase=1;rank=4 scaffold_100 . CDS 206734 208665 . - 0 ID=Physo141567;Parent=Physo141567;rank=3 scaffold_100 . CDS 208903 209034 . - 0 ID=Physo141567;Parent=Physo141567;rank=2 scaffold_100 . CDS 209492 211016 . - 0 ID=Physo141567;Parent=Physo141567;rank=1 scaffold_100 . biological_region 210606 210607 0.999 - . logic_name=eponine scaffold_100 . biological_region 210747 210750 0.999 + . logic_name=eponine scaffold_100 . biological_region 211310 211312 0.999 - . logic_name=eponine scaffold_100 . biological_region 211744 211753 0.999 - . logic_name=eponine scaffold_100 . exon 206734 208665 . - . ID=Physo141567.3;Parent=Physo141567;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_100 . exon 208903 209034 . - . ID=Physo141567.2;Parent=Physo141567;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_100 . exon 209492 211016 . - . ID=Physo141567.1;Parent=Physo141567;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . repeat_region 219822 219829 . ? . description=dust scaffold_100 . repeat_region 221932 221993 . ? . description=trf scaffold_100 . repeat_region 222209 222216 . ? . description=dust scaffold_100 . repeat_region 222754 222763 . ? . description=dust scaffold_100 ensembl protein_coding_gene 216364 217527 . + . ID=Physo141568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000054;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 216364 217527 . + . ID=Physo141568;Parent=Physo141568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 216364 216430 . + 0 ID=Physo141568;Parent=Physo141568;rank=1 scaffold_100 . exon 216364 216430 . + . ID=Physo141568.1;Parent=Physo141568;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . CDS 216784 217100 . + 0 ID=Physo141568;Parent=Physo141568;rank=2 scaffold_100 . exon 216784 217100 . + . ID=Physo141568.2;Parent=Physo141568;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 217132 217497 . + 0 ID=Physo141568;Parent=Physo141568;rank=3 scaffold_100 . exon 217132 217527 . + . ID=Physo141568.3;Parent=Physo141568;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_100 . biological_region 234412 234419 0.999 - . logic_name=eponine scaffold_100 . biological_region 234428 234430 0.999 + . logic_name=eponine scaffold_100 . biological_region 234541 234544 0.999 + . logic_name=eponine scaffold_100 . biological_region 234542 234555 0.999 - . logic_name=eponine scaffold_100 ensembl protein_coding_gene 234257 234904 . + . ID=Physo141569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000055;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 234257 234904 . + . ID=Physo141569;Parent=Physo141569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 234257 234904 . + 0 ID=Physo141569;Parent=Physo141569;rank=1 scaffold_100 . exon 234257 234904 . + . ID=Physo141569.1;Parent=Physo141569;constitutive=1;rank=1 scaffold_100 . repeat_region 235915 235922 . ? . description=dust scaffold_100 . repeat_region 237191 237234 . ? . description=trf scaffold_100 . repeat_region 240075 240083 . ? . description=dust scaffold_100 . repeat_region 241075 241413 . ? . description=trf scaffold_100 . repeat_region 242702 243086 . ? . description=trf scaffold_100 ensembl protein_coding_gene 236214 237615 . - . ID=Physo141570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000056;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 236214 237615 . - . ID=Physo141570;Parent=Physo141570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . exon 236214 236609 . - . ID=Physo141570.5;Parent=Physo141570;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_100 . CDS 236490 236609 . - 0 ID=Physo141570;Parent=Physo141570;rank=5 scaffold_100 . CDS 236676 237188 . - 0 ID=Physo141570;Parent=Physo141570;rank=4 scaffold_100 . exon 236676 237188 . - . ID=Physo141570.4;Parent=Physo141570;constitutive=1;rank=4 scaffold_100 . CDS 237273 237307 . - 0 ID=Physo141570;Parent=Physo141570;rank=3 scaffold_100 . exon 237273 237307 . - . ID=Physo141570.3;Parent=Physo141570;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 237336 237525 . - 0 ID=Physo141570;Parent=Physo141570;rank=2 scaffold_100 . exon 237336 237525 . - . ID=Physo141570.2;Parent=Physo141570;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_100 . CDS 237598 237615 . - 0 ID=Physo141570;Parent=Physo141570;rank=1 scaffold_100 . exon 237598 237615 . - . ID=Physo141570.1;Parent=Physo141570;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 240936 241427 . - . ID=Physo141571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000057;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 240936 241427 . - . ID=Physo141571;Parent=Physo141571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 240936 241427 . - 0 ID=Physo141571;Parent=Physo141571;rank=1 scaffold_100 . exon 240936 241427 . - . ID=Physo141571.1;Parent=Physo141571;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 242188 243430 . - . ID=Physo141572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000058;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 242188 243430 . - . ID=Physo141572;Parent=Physo141572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 242188 242556 . - 0 ID=Physo141572;Parent=Physo141572;rank=2 scaffold_100 . exon 242188 242556 . - . ID=Physo141572.2;Parent=Physo141572;constitutive=1;rank=2 scaffold_100 . CDS 242684 243430 . - 0 ID=Physo141572;Parent=Physo141572;rank=1 scaffold_100 . exon 242684 243430 . - . ID=Physo141572.1;Parent=Physo141572;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 243840 245188 . + . ID=Physo141573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000059;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 243840 245188 . + . ID=Physo141573;Parent=Physo141573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 243840 244764 . + 0 ID=Physo141573;Parent=Physo141573;rank=1 scaffold_100 . exon 243840 244764 . + . ID=Physo141573.1;Parent=Physo141573;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_100 . CDS 244825 244883 . + 0 ID=Physo141573;Parent=Physo141573;rank=2 scaffold_100 . exon 244825 244883 . + . ID=Physo141573.2;Parent=Physo141573;constitutive=1;ensembl_phase=1;rank=2 scaffold_100 . CDS 244958 245188 . + 0 ID=Physo141573;Parent=Physo141573;rank=3 scaffold_100 . exon 244958 245188 . + . ID=Physo141573.3;Parent=Physo141573;constitutive=1;rank=3 scaffold_100 . biological_region 250057 250061 0.999 + . logic_name=eponine scaffold_100 ensembl protein_coding_gene 245296 247639 . - . ID=Physo141574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000060;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 245296 247639 . - . ID=Physo141574;Parent=Physo141574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 245296 245994 . - 0 ID=Physo141574;Parent=Physo141574;rank=6 scaffold_100 . exon 245296 245994 . - . ID=Physo141574.6;Parent=Physo141574;constitutive=1;rank=6 scaffold_100 . CDS 246069 246458 . - 0 ID=Physo141574;Parent=Physo141574;rank=5 scaffold_100 . exon 246069 246458 . - . ID=Physo141574.5;Parent=Physo141574;constitutive=1;rank=5 scaffold_100 . CDS 246632 246747 . - 0 ID=Physo141574;Parent=Physo141574;rank=4 scaffold_100 . exon 246632 246747 . - . ID=Physo141574.4;Parent=Physo141574;constitutive=1;ensembl_phase=1;rank=4 scaffold_100 . CDS 247009 247268 . - 0 ID=Physo141574;Parent=Physo141574;rank=3 scaffold_100 . exon 247009 247268 . - . ID=Physo141574.3;Parent=Physo141574;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_100 . CDS 247332 247423 . - 0 ID=Physo141574;Parent=Physo141574;rank=2 scaffold_100 . exon 247332 247423 . - . ID=Physo141574.2;Parent=Physo141574;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_100 . CDS 247490 247639 . - 0 ID=Physo141574;Parent=Physo141574;rank=1 scaffold_100 . exon 247490 247639 . - . ID=Physo141574.1;Parent=Physo141574;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 248672 251241 . + . ID=Physo141575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000061;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 248672 251241 . + . ID=Physo141575;Parent=Physo141575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 248672 251188 . + 0 ID=Physo141575;Parent=Physo141575;rank=1 scaffold_100 . exon 248672 251188 . + . ID=Physo141575.1;Parent=Physo141575;constitutive=1;rank=1 scaffold_100 . CDS 251233 251241 . + 0 ID=Physo141575;Parent=Physo141575;rank=2 scaffold_100 . exon 251233 251241 . + . ID=Physo141575.2;Parent=Physo141575;constitutive=1;rank=2 scaffold_100 ensembl protein_coding_gene 251757 252814 . - . ID=Physo141576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000062;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 251757 252814 . - . ID=Physo141576;Parent=Physo141576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 251757 251774 . - 0 ID=Physo141576;Parent=Physo141576;rank=3 scaffold_100 . exon 251757 251774 . - . ID=Physo141576.3;Parent=Physo141576;constitutive=1;rank=3 scaffold_100 . CDS 251870 252550 . - 0 ID=Physo141576;Parent=Physo141576;rank=2 scaffold_100 . exon 251870 252550 . - . ID=Physo141576.2;Parent=Physo141576;constitutive=1;rank=2 scaffold_100 . CDS 252647 252814 . - 0 ID=Physo141576;Parent=Physo141576;rank=1 scaffold_100 . exon 252647 252814 . - . ID=Physo141576.1;Parent=Physo141576;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 253402 256791 . - . ID=Physo141577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000063;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 253402 256791 . - . ID=Physo141577;Parent=Physo141577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 253402 256791 . - 0 ID=Physo141577;Parent=Physo141577;rank=1 scaffold_100 . exon 253402 256791 . - . ID=Physo141577.1;Parent=Physo141577;constitutive=1;rank=1 scaffold_100 . repeat_region 257373 257382 . ? . description=dust scaffold_100 . repeat_region 260245 260265 . ? . description=trf scaffold_100 ensembl protein_coding_gene 257830 259154 . + . ID=Physo141578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000064;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 257830 259154 . + . ID=Physo141578;Parent=Physo141578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 257830 258051 . + 0 ID=Physo141578;Parent=Physo141578;rank=1 scaffold_100 . exon 257830 258051 . + . ID=Physo141578.1;Parent=Physo141578;constitutive=1;rank=1 scaffold_100 . CDS 258123 258317 . + 0 ID=Physo141578;Parent=Physo141578;rank=2 scaffold_100 . exon 258123 258317 . + . ID=Physo141578.2;Parent=Physo141578;constitutive=1;rank=2 scaffold_100 . CDS 258390 259154 . + 0 ID=Physo141578;Parent=Physo141578;rank=3 scaffold_100 . exon 258390 259154 . + . ID=Physo141578.3;Parent=Physo141578;constitutive=1;rank=3 scaffold_100 ensembl protein_coding_gene 259663 261201 . - . ID=Physo141579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000065;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 259663 261201 . - . ID=Physo141579;Parent=Physo141579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 259663 261201 . - 0 ID=Physo141579;Parent=Physo141579;rank=1 scaffold_100 . exon 259663 261201 . - . ID=Physo141579.1;Parent=Physo141579;constitutive=1;rank=1 scaffold_100 . biological_region 267869 267871 0.999 + . logic_name=eponine scaffold_100 . biological_region 267974 267975 0.999 - . logic_name=eponine scaffold_100 . biological_region 268110 268111 0.999 + . logic_name=eponine scaffold_100 . biological_region 268486 268490 0.999 + . logic_name=eponine scaffold_100 . biological_region 268489 268496 0.999 - . logic_name=eponine scaffold_100 . biological_region 268510 268510 0.999 + . logic_name=eponine scaffold_100 . biological_region 268679 268685 0.999 + . logic_name=eponine scaffold_100 . biological_region 268822 268826 0.999 - . logic_name=eponine scaffold_100 . biological_region 268843 268846 0.999 - . logic_name=eponine scaffold_100 . biological_region 269039 269041 0.999 + . logic_name=eponine scaffold_100 . biological_region 269062 269066 0.999 + . logic_name=eponine scaffold_100 . biological_region 269079 269084 0.999 - . logic_name=eponine scaffold_100 . biological_region 269111 269114 0.999 - . logic_name=eponine scaffold_100 . biological_region 269178 269178 0.999 - . logic_name=eponine scaffold_100 . biological_region 269477 269481 0.999 + . logic_name=eponine scaffold_100 . biological_region 269571 269574 0.999 + . logic_name=eponine scaffold_100 . biological_region 273094 273098 0.999 + . logic_name=eponine scaffold_100 . biological_region 273179 273182 0.999 - . logic_name=eponine scaffold_100 . biological_region 273190 273190 0.999 + . logic_name=eponine scaffold_100 . biological_region 274196 274200 0.999 + . logic_name=eponine scaffold_100 . biological_region 274307 274308 0.999 - . logic_name=eponine scaffold_100 ensembl protein_coding_gene 265152 266150 . - . ID=Physo141580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000066;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 265152 266150 . - . ID=Physo141580;Parent=Physo141580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 265152 265402 . - 0 ID=Physo141580;Parent=Physo141580;rank=3 scaffold_100 . exon 265152 265402 . - . ID=Physo141580.3;Parent=Physo141580;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 265477 265834 . - 0 ID=Physo141580;Parent=Physo141580;rank=2 scaffold_100 . exon 265477 265834 . - . ID=Physo141580.2;Parent=Physo141580;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_100 . CDS 265893 266150 . - 0 ID=Physo141580;Parent=Physo141580;rank=1 scaffold_100 . exon 265893 266150 . - . ID=Physo141580.1;Parent=Physo141580;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 266599 270808 . + . ID=Physo141581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000067;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 266599 270808 . + . ID=Physo141581;Parent=Physo141581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 266599 268175 . + 0 ID=Physo141581;Parent=Physo141581;rank=1 scaffold_100 . exon 266599 268175 . + . ID=Physo141581.1;Parent=Physo141581;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 . CDS 268321 269683 . + 0 ID=Physo141581;Parent=Physo141581;rank=2 scaffold_100 . exon 268321 269683 . + . ID=Physo141581.2;Parent=Physo141581;constitutive=1;ensembl_phase=2;rank=2 scaffold_100 . CDS 270346 270720 . + 0 ID=Physo141581;Parent=Physo141581;rank=3 scaffold_100 . exon 270346 270808 . + . ID=Physo141581.3;Parent=Physo141581;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_100 ensembl protein_coding_gene 272931 274334 . + . ID=Physo141582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000068;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 272931 274334 . + . ID=Physo141582;Parent=Physo141582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 272931 274334 . + 0 ID=Physo141582;Parent=Physo141582;rank=1 scaffold_100 . exon 272931 274334 . + . ID=Physo141582.1;Parent=Physo141582;constitutive=1;rank=1 scaffold_100 . repeat_region 281628 281635 . ? . description=dust scaffold_100 . repeat_region 282010 282017 . ? . description=dust scaffold_100 ensembl protein_coding_gene 276724 277704 . - . ID=Physo109406;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_1000003;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 276724 277704 . - . ID=Physo109406;Parent=Physo109406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 276724 277704 . - 0 ID=Physo109406;Parent=Physo109406;rank=1 scaffold_100 . exon 276724 277704 . - . ID=Physo109406.1;Parent=Physo109406;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 274693 275001 . + . ID=Physo141583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000069;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 274693 275001 . + . ID=Physo141583;Parent=Physo141583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 274693 275001 . + 0 ID=Physo141583;Parent=Physo141583;rank=1 scaffold_100 . exon 274693 275001 . + . ID=Physo141583.1;Parent=Physo141583;constitutive=1;rank=1 scaffold_100 ensembl protein_coding_gene 275152 275977 . - . ID=Physo141584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000070;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 275152 275977 . - . ID=Physo141584;Parent=Physo141584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 275152 275183 . - 0 ID=Physo141584;Parent=Physo141584;rank=3 scaffold_100 . exon 275152 275183 . - . ID=Physo141584.3;Parent=Physo141584;constitutive=1;ensembl_phase=1;rank=3 scaffold_100 . CDS 275272 275648 . - 0 ID=Physo141584;Parent=Physo141584;rank=2 scaffold_100 . exon 275272 275648 . - . ID=Physo141584.2;Parent=Physo141584;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_100 . CDS 275739 275977 . - 0 ID=Physo141584;Parent=Physo141584;rank=1 scaffold_100 . exon 275739 275977 . - . ID=Physo141584.1;Parent=Physo141584;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_100 ensembl protein_coding_gene 278996 280360 . - . ID=Physo141586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000072;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 278996 280360 . - . ID=Physo141586;Parent=Physo141586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 278996 280360 . - 0 ID=Physo141586;Parent=Physo141586;rank=1 scaffold_100 . exon 278996 280360 . - . ID=Physo141586.1;Parent=Physo141586;constitutive=1;rank=1 scaffold_100 . repeat_region 290364 290412 . ? . description=trf scaffold_100 . biological_region 292605 292607 0.999 - . logic_name=eponine scaffold_100 . biological_region 293985 293986 0.999 + . logic_name=eponine scaffold_100 ensembl protein_coding_gene 291940 300627 . + . ID=Physo141587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_1000073;logic_name=jgi_physo1_1 scaffold_100 ensembl transcript 291940 300627 . + . ID=Physo141587;Parent=Physo141587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_100 . CDS 291940 293028 . + 0 ID=Physo141587;Parent=Physo141587;rank=1 scaffold_100 . exon 291940 293028 . + . ID=Physo141587.1;Parent=Physo141587;constitutive=1;rank=1 scaffold_100 . CDS 293350 293841 . + 0 ID=Physo141587;Parent=Physo141587;rank=2 scaffold_100 . exon 293350 293841 . + . ID=Physo141587.2;Parent=Physo141587;constitutive=1;rank=2 scaffold_100 . CDS 293871 293915 . + 0 ID=Physo141587;Parent=Physo141587;rank=3 scaffold_100 . exon 293871 293915 . + . ID=Physo141587.3;Parent=Physo141587;constitutive=1;rank=3 scaffold_100 . CDS 294018 294819 . + 0 ID=Physo141587;Parent=Physo141587;rank=4 scaffold_100 . CDS 295090 295392 . + 0 ID=Physo141587;Parent=Physo141587;rank=5 scaffold_100 . CDS 295435 295808 . + 0 ID=Physo141587;Parent=Physo141587;rank=6 scaffold_100 . CDS 296144 296745 . + 0 ID=Physo141587;Parent=Physo141587;rank=7 scaffold_100 . CDS 296830 297298 . + 0 ID=Physo141587;Parent=Physo141587;rank=8 scaffold_100 . CDS 297328 298263 . + 0 ID=Physo141587;Parent=Physo141587;rank=9 scaffold_100 . CDS 298927 299457 . + 0 ID=Physo141587;Parent=Physo141587;rank=10 scaffold_100 . CDS 299494 300474 . + 0 ID=Physo141587;Parent=Physo141587;rank=11 scaffold_100 . CDS 300574 300627 . + 0 ID=Physo141587;Parent=Physo141587;rank=12 scaffold_100 . repeat_region 301236 302078 . ? . description=dust scaffold_100 . repeat_region 302535 302544 . ? . description=dust scaffold_100 . repeat_region 302633 302642 . ? . description=dust scaffold_100 . exon 294018 294819 . + . ID=Physo141587.4;Parent=Physo141587;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_100 . exon 295090 295392 . + . ID=Physo141587.5;Parent=Physo141587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_100 . exon 295435 295808 . + . ID=Physo141587.6;Parent=Physo141587;constitutive=1;ensembl_phase=1;rank=6 scaffold_100 . exon 296144 296745 . + . ID=Physo141587.7;Parent=Physo141587;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_100 . exon 296830 297298 . + . ID=Physo141587.8;Parent=Physo141587;constitutive=1;ensembl_phase=2;rank=8 scaffold_100 . exon 297328 298263 . + . ID=Physo141587.9;Parent=Physo141587;constitutive=1;rank=9 scaffold_100 . exon 298927 299457 . + . ID=Physo141587.10;Parent=Physo141587;constitutive=1;rank=10 scaffold_100 . exon 299494 300474 . + . ID=Physo141587.11;Parent=Physo141587;constitutive=1;rank=11 scaffold_100 . exon 300574 300627 . + . ID=Physo141587.12;Parent=Physo141587;constitutive=1;rank=12 ##gff-version 3 ##sequence-region scaffold_98 1 304767 scaffold_98 . repeat_region 737 800 . ? . description=dust scaffold_98 . repeat_region 744 782 . ? . description=trf scaffold_98 . repeat_region 966 995 . ? . description=trf scaffold_98 . repeat_region 1208 1232 . ? . description=trf scaffold_98 . repeat_region 1575 4754 . ? . description=dust scaffold_98 . repeat_region 5070 5108 . ? . description=trf scaffold_98 . repeat_region 5292 5337 . + . description=(CCTA)n scaffold_98 . repeat_region 5294 5329 . ? . description=dust scaffold_98 . repeat_region 5294 5337 . ? . description=trf scaffold_98 . biological_region 7894 7897 0.999 + . logic_name=eponine scaffold_98 ensembl protein_coding_gene 9620 10649 . + . ID=Physo109385;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980001;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 9620 10649 . + . ID=Physo109385;Parent=Physo109385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 9620 9650 . + 0 ID=Physo109385;Parent=Physo109385;rank=1 scaffold_98 . exon 9620 9650 . + . ID=Physo109385.1;Parent=Physo109385;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_98 . CDS 9727 10649 . + 0 ID=Physo109385;Parent=Physo109385;rank=2 scaffold_98 . exon 9727 10649 . + . ID=Physo109385.2;Parent=Physo109385;constitutive=1;ensembl_phase=1;rank=2 scaffold_98 ensembl protein_coding_gene 463 948 . + . ID=Physo141393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980001;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 463 948 . + . ID=Physo141393;Parent=Physo141393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 463 948 . + 0 ID=Physo141393;Parent=Physo141393;rank=1 scaffold_98 . exon 463 948 . + . ID=Physo141393.1;Parent=Physo141393;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 4948 5274 . + . ID=Physo141394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980002;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 4948 5274 . + . ID=Physo141394;Parent=Physo141394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 4948 5274 . + 0 ID=Physo141394;Parent=Physo141394;rank=1 scaffold_98 . exon 4948 5274 . + . ID=Physo141394.1;Parent=Physo141394;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 10700 11395 . - . ID=Physo121940;biotype=protein_coding;external_name=estExt_Genewise1.C_980006;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 10700 11395 . - . ID=Physo121940;Parent=Physo121940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 10700 10946 . - . ID=Physo121940.4;Parent=Physo121940;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_98 . CDS 10862 10946 . - 0 ID=Physo121940;Parent=Physo121940;rank=4 scaffold_98 . CDS 11037 11119 . - 0 ID=Physo121940;Parent=Physo121940;rank=3 scaffold_98 . exon 11037 11119 . - . ID=Physo121940.3;Parent=Physo121940;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_98 . CDS 11213 11260 . - 0 ID=Physo121940;Parent=Physo121940;rank=2 scaffold_98 . exon 11213 11260 . - . ID=Physo121940.2;Parent=Physo121940;constitutive=1;rank=2 scaffold_98 . CDS 11356 11373 . - 0 ID=Physo121940;Parent=Physo121940;rank=1 scaffold_98 . exon 11356 11395 . - . ID=Physo121940.1;Parent=Physo121940;constitutive=1;ensembl_phase=-1;rank=1 scaffold_98 ensembl protein_coding_gene 11666 12474 . + . ID=Physo121947;biotype=protein_coding;external_name=estExt_Genewise1.C_980013;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 11666 12474 . + . ID=Physo121947;Parent=Physo121947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 11666 11764 . + . ID=Physo121947.1;Parent=Physo121947;constitutive=1;ensembl_phase=-1;rank=1 scaffold_98 . CDS 11672 11764 . + 0 ID=Physo121947;Parent=Physo121947;rank=1 scaffold_98 . CDS 11857 11941 . + 0 ID=Physo121947;Parent=Physo121947;rank=2 scaffold_98 . exon 11857 11941 . + . ID=Physo121947.2;Parent=Physo121947;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . CDS 12007 12062 . + 0 ID=Physo121947;Parent=Physo121947;rank=3 scaffold_98 . exon 12007 12062 . + . ID=Physo121947.3;Parent=Physo121947;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 12139 12247 . + 0 ID=Physo121947;Parent=Physo121947;rank=4 scaffold_98 . exon 12139 12247 . + . ID=Physo121947.4;Parent=Physo121947;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_98 . CDS 12325 12473 . + 0 ID=Physo121947;Parent=Physo121947;rank=5 scaffold_98 . exon 12325 12474 . + . ID=Physo121947.5;Parent=Physo121947;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_98 ensembl protein_coding_gene 12862 13888 . - . ID=Physo141397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980005;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 12862 13888 . - . ID=Physo141397;Parent=Physo141397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 12862 13888 . - . ID=Physo141397.1;Parent=Physo141397;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_98 . CDS 12937 13875 . - 0 ID=Physo141397;Parent=Physo141397;rank=1 scaffold_98 ensembl protein_coding_gene 14171 21183 . + . ID=Physo141398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980006;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 14171 21183 . + . ID=Physo141398;Parent=Physo141398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 14171 21181 . + 0 ID=Physo141398;Parent=Physo141398;rank=1 scaffold_98 . exon 14171 21183 . + . ID=Physo141398.1;Parent=Physo141398;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_98 . biological_region 22388 22389 0.999 - . logic_name=eponine scaffold_98 . repeat_region 22592 22628 . ? . description=dust scaffold_98 . repeat_region 22592 22628 . ? . description=trf scaffold_98 . repeat_region 22592 22628 . ? . description=trf scaffold_98 . repeat_region 23238 23245 . ? . description=dust scaffold_98 . repeat_region 26890 26925 . ? . description=trf scaffold_98 . repeat_region 28257 28308 . ? . description=trf scaffold_98 ensembl protein_coding_gene 21299 22697 . - . ID=Physo109386;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980002;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 21299 22697 . - . ID=Physo109386;Parent=Physo109386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 21299 22129 . - 0 ID=Physo109386;Parent=Physo109386;rank=2 scaffold_98 . exon 21299 22129 . - . ID=Physo109386.2;Parent=Physo109386;constitutive=1;rank=2 scaffold_98 . CDS 22209 22697 . - 0 ID=Physo109386;Parent=Physo109386;rank=1 scaffold_98 . exon 22209 22697 . - . ID=Physo109386.1;Parent=Physo109386;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 33027 35957 . - . ID=Physo141400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980008;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 33027 35957 . - . ID=Physo141400;Parent=Physo141400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 33027 34501 . - 0 ID=Physo141400;Parent=Physo141400;rank=4 scaffold_98 . exon 33027 34501 . - . ID=Physo141400.4;Parent=Physo141400;constitutive=1;ensembl_phase=1;rank=4 scaffold_98 . CDS 34713 34814 . - 0 ID=Physo141400;Parent=Physo141400;rank=3 scaffold_98 . exon 34713 34814 . - . ID=Physo141400.3;Parent=Physo141400;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 35147 35643 . - 0 ID=Physo141400;Parent=Physo141400;rank=2 scaffold_98 . exon 35147 35643 . - . ID=Physo141400.2;Parent=Physo141400;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 35950 35957 . - 0 ID=Physo141400;Parent=Physo141400;rank=1 scaffold_98 . exon 35950 35957 . - . ID=Physo141400.1;Parent=Physo141400;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 ensembl protein_coding_gene 38331 38753 . + . ID=Physo141401;biotype=protein_coding;description=PsAvh245 [Source:UniProtKB/TrEMBL%3BAcc:E0W5K0];external_name=estExt_fgenesh1_pg.C_980009;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 38331 38753 . + . ID=Physo141401;Parent=Physo141401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 38331 38753 . + 0 ID=Physo141401;Parent=Physo141401;rank=1 scaffold_98 . exon 38331 38753 . + . ID=Physo141401.1;Parent=Physo141401;constitutive=1;rank=1 scaffold_98 . biological_region 41203 41207 0.999 + . logic_name=eponine scaffold_98 . biological_region 41209 41211 0.999 - . logic_name=eponine scaffold_98 . biological_region 41277 41282 0.999 - . logic_name=eponine scaffold_98 . repeat_region 42839 42847 . ? . description=dust scaffold_98 . biological_region 46896 46898 0.999 - . logic_name=eponine scaffold_98 . biological_region 48004 48006 0.999 - . logic_name=eponine scaffold_98 . repeat_region 48427 48452 . ? . description=dust scaffold_98 . repeat_region 48427 48452 . ? . description=trf scaffold_98 . repeat_region 48572 48621 . ? . description=dust scaffold_98 . repeat_region 48577 48596 . ? . description=trf scaffold_98 . biological_region 48851 48854 0.999 - . logic_name=eponine scaffold_98 . biological_region 48878 48880 0.999 - . logic_name=eponine scaffold_98 ensembl protein_coding_gene 43248 44875 . + . ID=Physo141402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980010;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 43248 44875 . + . ID=Physo141402;Parent=Physo141402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 43248 43443 . + 0 ID=Physo141402;Parent=Physo141402;rank=1 scaffold_98 . exon 43248 43443 . + . ID=Physo141402.1;Parent=Physo141402;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_98 . CDS 43506 43775 . + 0 ID=Physo141402;Parent=Physo141402;rank=2 scaffold_98 . exon 43506 43775 . + . ID=Physo141402.2;Parent=Physo141402;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_98 . CDS 43956 44018 . + 0 ID=Physo141402;Parent=Physo141402;rank=3 scaffold_98 . exon 43956 44018 . + . ID=Physo141402.3;Parent=Physo141402;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 44204 44210 . + 0 ID=Physo141402;Parent=Physo141402;rank=4 scaffold_98 . exon 44204 44210 . + . ID=Physo141402.4;Parent=Physo141402;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_98 . CDS 44553 44832 . + 0 ID=Physo141402;Parent=Physo141402;rank=5 scaffold_98 . exon 44553 44832 . + . ID=Physo141402.5;Parent=Physo141402;constitutive=1;ensembl_phase=2;rank=5 scaffold_98 . CDS 44864 44875 . + 0 ID=Physo141402;Parent=Physo141402;rank=6 scaffold_98 . exon 44864 44875 . + . ID=Physo141402.6;Parent=Physo141402;constitutive=1;rank=6 scaffold_98 ensembl protein_coding_gene 46948 48861 . - . ID=Physo141403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980011;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 46948 48861 . - . ID=Physo141403;Parent=Physo141403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 46948 48861 . - 0 ID=Physo141403;Parent=Physo141403;rank=1 scaffold_98 . exon 46948 48861 . - . ID=Physo141403.1;Parent=Physo141403;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 49088 50228 . - . ID=Physo141404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980012;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 49088 50228 . - . ID=Physo141404;Parent=Physo141404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 49088 49632 . - . ID=Physo141404.2;Parent=Physo141404;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_98 . CDS 49415 49632 . - 0 ID=Physo141404;Parent=Physo141404;rank=2 scaffold_98 . CDS 49709 50117 . - 0 ID=Physo141404;Parent=Physo141404;rank=1 scaffold_98 ensembl protein_coding_gene 50458 51746 . - . ID=Physo109387;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980003;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 50458 51746 . - . ID=Physo109387;Parent=Physo109387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 50458 50607 . - . ID=Physo109387.4;Parent=Physo109387;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_98 . CDS 50589 50607 . - 0 ID=Physo109387;Parent=Physo109387;rank=4 scaffold_98 . CDS 50703 51064 . - 0 ID=Physo109387;Parent=Physo109387;rank=3 scaffold_98 . exon 50703 51064 . - . ID=Physo109387.3;Parent=Physo109387;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_98 . CDS 51161 51285 . - 0 ID=Physo109387;Parent=Physo109387;rank=2 scaffold_98 . exon 51161 51285 . - . ID=Physo109387.2;Parent=Physo109387;constitutive=1;ensembl_phase=1;rank=2 scaffold_98 . CDS 51351 51741 . - 0 ID=Physo109387;Parent=Physo109387;rank=1 scaffold_98 . exon 51351 51746 . - . ID=Physo109387.1;Parent=Physo109387;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_98 ensembl protein_coding_gene 52000 52805 . + . ID=Physo109388;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980004;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 52000 52805 . + . ID=Physo109388;Parent=Physo109388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 52000 52805 . + . ID=Physo109388.1;Parent=Physo109388;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_98 . CDS 52024 52602 . + 0 ID=Physo109388;Parent=Physo109388;rank=1 scaffold_98 . exon 49709 50228 . - . ID=Physo141404.1;Parent=Physo141404;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_98 ensembl protein_coding_gene 53056 56637 . - . ID=Physo141407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980015;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 53056 56637 . - . ID=Physo141407;Parent=Physo141407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 53056 53589 . - . ID=Physo141407.5;Parent=Physo141407;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_98 . CDS 53149 53589 . - 0 ID=Physo141407;Parent=Physo141407;rank=5 scaffold_98 . CDS 53660 53731 . - 0 ID=Physo141407;Parent=Physo141407;rank=4 scaffold_98 . exon 53660 53731 . - . ID=Physo141407.4;Parent=Physo141407;constitutive=1;rank=4 scaffold_98 . CDS 53805 54071 . - 0 ID=Physo141407;Parent=Physo141407;rank=3 scaffold_98 . exon 53805 54071 . - . ID=Physo141407.3;Parent=Physo141407;constitutive=1;rank=3 scaffold_98 . CDS 54147 56432 . - 0 ID=Physo141407;Parent=Physo141407;rank=2 scaffold_98 . exon 54147 56432 . - . ID=Physo141407.2;Parent=Physo141407;constitutive=1;rank=2 scaffold_98 . CDS 56593 56637 . - 0 ID=Physo141407;Parent=Physo141407;rank=1 scaffold_98 . exon 56593 56637 . - . ID=Physo141407.1;Parent=Physo141407;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 57000 58794 . + . ID=Physo141408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980016;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 57000 58794 . + . ID=Physo141408;Parent=Physo141408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 57000 57294 . + 0 ID=Physo141408;Parent=Physo141408;rank=1 scaffold_98 . exon 57000 57294 . + . ID=Physo141408.1;Parent=Physo141408;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_98 . CDS 57368 58642 . + 0 ID=Physo141408;Parent=Physo141408;rank=2 scaffold_98 . exon 57368 58642 . + . ID=Physo141408.2;Parent=Physo141408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_98 . CDS 58775 58794 . + 0 ID=Physo141408;Parent=Physo141408;rank=3 scaffold_98 . exon 58775 58794 . + . ID=Physo141408.3;Parent=Physo141408;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . repeat_region 60115 60124 . ? . description=dust scaffold_98 . repeat_region 62275 62282 . ? . description=dust scaffold_98 . repeat_region 62771 62804 . ? . description=trf scaffold_98 . repeat_region 63303 63311 . ? . description=dust scaffold_98 ensembl protein_coding_gene 64662 66926 . + . ID=Physo141409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980017;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 64662 66926 . + . ID=Physo141409;Parent=Physo141409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 64662 65206 . + 0 ID=Physo141409;Parent=Physo141409;rank=1 scaffold_98 . exon 64662 65206 . + . ID=Physo141409.1;Parent=Physo141409;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 . CDS 65424 65521 . + 0 ID=Physo141409;Parent=Physo141409;rank=2 scaffold_98 . exon 65424 65521 . + . ID=Physo141409.2;Parent=Physo141409;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 65614 66926 . + 0 ID=Physo141409;Parent=Physo141409;rank=3 scaffold_98 . exon 65614 66926 . + . ID=Physo141409.3;Parent=Physo141409;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 ensembl protein_coding_gene 67604 69556 . + . ID=Physo141410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980018;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 67604 69556 . + . ID=Physo141410;Parent=Physo141410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 67604 69556 . + 0 ID=Physo141410;Parent=Physo141410;rank=1 scaffold_98 . exon 67604 69556 . + . ID=Physo141410.1;Parent=Physo141410;constitutive=1;rank=1 scaffold_98 . biological_region 70633 70635 0.999 - . logic_name=eponine scaffold_98 . biological_region 70761 70765 0.999 + . logic_name=eponine scaffold_98 . biological_region 70762 70765 0.999 - . logic_name=eponine scaffold_98 . biological_region 71881 71889 0.999 + . logic_name=eponine scaffold_98 . biological_region 71968 71970 0.999 - . logic_name=eponine scaffold_98 ensembl protein_coding_gene 70343 73422 . + . ID=Physo141411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980019;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 70343 73422 . + . ID=Physo141411;Parent=Physo141411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 70343 70987 . + 0 ID=Physo141411;Parent=Physo141411;rank=1 scaffold_98 . exon 70343 70987 . + . ID=Physo141411.1;Parent=Physo141411;constitutive=1;rank=1 scaffold_98 . CDS 71080 71282 . + 0 ID=Physo141411;Parent=Physo141411;rank=2 scaffold_98 . exon 71080 71282 . + . ID=Physo141411.2;Parent=Physo141411;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_98 . CDS 71420 71452 . + 0 ID=Physo141411;Parent=Physo141411;rank=3 scaffold_98 . exon 71420 71452 . + . ID=Physo141411.3;Parent=Physo141411;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_98 . CDS 71667 72296 . + 0 ID=Physo141411;Parent=Physo141411;rank=4 scaffold_98 . exon 71667 72296 . + . ID=Physo141411.4;Parent=Physo141411;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_98 . CDS 72377 73319 . + 0 ID=Physo141411;Parent=Physo141411;rank=5 scaffold_98 . exon 72377 73422 . + . ID=Physo141411.5;Parent=Physo141411;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_98 ensembl protein_coding_gene 73473 74180 . - . ID=Physo141412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980020;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 73473 74180 . - . ID=Physo141412;Parent=Physo141412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 73473 73679 . - 0 ID=Physo141412;Parent=Physo141412;rank=5 scaffold_98 . exon 73473 73679 . - . ID=Physo141412.5;Parent=Physo141412;constitutive=1;rank=5 scaffold_98 . CDS 73752 73834 . - 0 ID=Physo141412;Parent=Physo141412;rank=4 scaffold_98 . exon 73752 73834 . - . ID=Physo141412.4;Parent=Physo141412;constitutive=1;ensembl_phase=1;rank=4 scaffold_98 . CDS 73899 73957 . - 0 ID=Physo141412;Parent=Physo141412;rank=3 scaffold_98 . exon 73899 73957 . - . ID=Physo141412.3;Parent=Physo141412;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_98 . CDS 74034 74074 . - 0 ID=Physo141412;Parent=Physo141412;rank=2 scaffold_98 . exon 74034 74074 . - . ID=Physo141412.2;Parent=Physo141412;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_98 . CDS 74142 74180 . - 0 ID=Physo141412;Parent=Physo141412;rank=1 scaffold_98 . exon 74142 74180 . - . ID=Physo141412.1;Parent=Physo141412;constitutive=1;rank=1 scaffold_98 . repeat_region 83698 83791 . ? . description=dust scaffold_98 . repeat_region 83699 83819 . ? . description=trf scaffold_98 ensembl protein_coding_gene 85234 86161 . - . ID=Physo141413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980021;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 85234 86161 . - . ID=Physo141413;Parent=Physo141413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 85234 85323 . - 0 ID=Physo141413;Parent=Physo141413;rank=2 scaffold_98 . exon 85234 85323 . - . ID=Physo141413.2;Parent=Physo141413;constitutive=1;rank=2 scaffold_98 . CDS 85370 86161 . - 0 ID=Physo141413;Parent=Physo141413;rank=1 scaffold_98 . exon 85370 86161 . - . ID=Physo141413.1;Parent=Physo141413;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 87575 88653 . + . ID=Physo141414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980022;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 87575 88653 . + . ID=Physo141414;Parent=Physo141414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 87575 87982 . + 0 ID=Physo141414;Parent=Physo141414;rank=1 scaffold_98 . exon 87575 87982 . + . ID=Physo141414.1;Parent=Physo141414;constitutive=1;rank=1 scaffold_98 . CDS 88447 88653 . + 0 ID=Physo141414;Parent=Physo141414;rank=2 scaffold_98 . exon 88447 88653 . + . ID=Physo141414.2;Parent=Physo141414;constitutive=1;rank=2 scaffold_98 . biological_region 89223 89228 0.999 + . logic_name=eponine scaffold_98 . biological_region 89475 89477 0.999 - . logic_name=eponine scaffold_98 . biological_region 96825 96828 0.999 - . logic_name=eponine scaffold_98 ensembl protein_coding_gene 95793 96883 . - . ID=Physo109389;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980005;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 95793 96883 . - . ID=Physo109389;Parent=Physo109389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 95793 96883 . - . ID=Physo109389.1;Parent=Physo109389;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_98 . CDS 95917 96870 . - 0 ID=Physo109389;Parent=Physo109389;rank=1 scaffold_98 ensembl protein_coding_gene 91867 93611 . - . ID=Physo141415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980023;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 91867 93611 . - . ID=Physo141415;Parent=Physo141415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 91867 91906 . - 0 ID=Physo141415;Parent=Physo141415;rank=3 scaffold_98 . exon 91867 91906 . - . ID=Physo141415.3;Parent=Physo141415;constitutive=1;ensembl_phase=2;rank=3 scaffold_98 . CDS 91987 92342 . - 0 ID=Physo141415;Parent=Physo141415;rank=2 scaffold_98 . exon 91987 92342 . - . ID=Physo141415.2;Parent=Physo141415;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_98 . CDS 92502 93611 . - 0 ID=Physo141415;Parent=Physo141415;rank=1 scaffold_98 . exon 92502 93611 . - . ID=Physo141415.1;Parent=Physo141415;constitutive=1;rank=1 scaffold_98 . repeat_region 104985 105025 . ? . description=trf scaffold_98 . repeat_region 106092 106103 . ? . description=dust scaffold_98 . repeat_region 107768 107778 . ? . description=dust scaffold_98 ensembl protein_coding_gene 101671 105627 . - . ID=Physo141417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980025;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 101671 105627 . - . ID=Physo141417;Parent=Physo141417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 101671 103188 . - 0 ID=Physo141417;Parent=Physo141417;rank=6 scaffold_98 . exon 101671 103188 . - . ID=Physo141417.6;Parent=Physo141417;constitutive=1;rank=6 scaffold_98 . CDS 103215 103325 . - 0 ID=Physo141417;Parent=Physo141417;rank=5 scaffold_98 . exon 103215 103325 . - . ID=Physo141417.5;Parent=Physo141417;constitutive=1;rank=5 scaffold_98 . CDS 103382 104184 . - 0 ID=Physo141417;Parent=Physo141417;rank=4 scaffold_98 . exon 103382 104184 . - . ID=Physo141417.4;Parent=Physo141417;constitutive=1;ensembl_phase=1;rank=4 scaffold_98 . CDS 104233 104344 . - 0 ID=Physo141417;Parent=Physo141417;rank=3 scaffold_98 . exon 104233 104344 . - . ID=Physo141417.3;Parent=Physo141417;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_98 . CDS 104422 104899 . - 0 ID=Physo141417;Parent=Physo141417;rank=2 scaffold_98 . exon 104422 104899 . - . ID=Physo141417.2;Parent=Physo141417;constitutive=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 104975 105627 . - 0 ID=Physo141417;Parent=Physo141417;rank=1 scaffold_98 . exon 104975 105627 . - . ID=Physo141417.1;Parent=Physo141417;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 ensembl protein_coding_gene 110198 111553 . - . ID=Physo141418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980026;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 110198 111553 . - . ID=Physo141418;Parent=Physo141418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 110198 110445 . - 0 ID=Physo141418;Parent=Physo141418;rank=3 scaffold_98 . exon 110198 110445 . - . ID=Physo141418.3;Parent=Physo141418;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 110673 111444 . - 0 ID=Physo141418;Parent=Physo141418;rank=2 scaffold_98 . exon 110673 111444 . - . ID=Physo141418.2;Parent=Physo141418;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . CDS 111482 111553 . - 0 ID=Physo141418;Parent=Physo141418;rank=1 scaffold_98 . exon 111482 111553 . - . ID=Physo141418.1;Parent=Physo141418;constitutive=1;rank=1 scaffold_98 . repeat_region 112997 119568 . ? . description=dust scaffold_98 . repeat_region 119945 119958 . ? . description=dust scaffold_98 . repeat_region 120260 120267 . ? . description=dust scaffold_98 . repeat_region 122416 122424 . ? . description=dust scaffold_98 . biological_region 123961 123967 0.999 + . logic_name=eponine scaffold_98 . biological_region 123976 123980 0.999 + . logic_name=eponine scaffold_98 . repeat_region 124002 124095 . ? . description=dust scaffold_98 . biological_region 124031 124035 0.999 - . logic_name=eponine scaffold_98 . biological_region 124096 124101 0.999 - . logic_name=eponine scaffold_98 . biological_region 124109 124114 0.999 - . logic_name=eponine scaffold_98 . biological_region 127060 127064 0.999 + . logic_name=eponine scaffold_98 . biological_region 127107 127110 0.999 - . logic_name=eponine scaffold_98 . repeat_region 127628 127650 . ? . description=trf scaffold_98 ensembl protein_coding_gene 123143 124138 . - . ID=Physo109390;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980006;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 123143 124138 . - . ID=Physo109390;Parent=Physo109390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 123143 123569 . - . ID=Physo109390.3;Parent=Physo109390;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_98 . CDS 123373 123569 . - 0 ID=Physo109390;Parent=Physo109390;rank=2 scaffold_98 . CDS 123646 123835 . - 0 ID=Physo109390;Parent=Physo109390;rank=1 scaffold_98 . exon 123646 123841 . - . ID=Physo109390.2;Parent=Physo109390;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_98 . exon 124122 124138 . - . ID=Physo109390.1;Parent=Physo109390;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_98 ensembl protein_coding_gene 124484 124828 . - . ID=Physo141420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980028;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 124484 124828 . - . ID=Physo141420;Parent=Physo141420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 124484 124828 . - 0 ID=Physo141420;Parent=Physo141420;rank=1 scaffold_98 . exon 124484 124828 . - . ID=Physo141420.1;Parent=Physo141420;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 127660 130001 . + . ID=Physo141421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980029;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 127660 130001 . + . ID=Physo141421;Parent=Physo141421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 127660 128067 . + 0 ID=Physo141421;Parent=Physo141421;rank=1 scaffold_98 . exon 127660 128067 . + . ID=Physo141421.1;Parent=Physo141421;constitutive=1;rank=1 scaffold_98 . CDS 128150 128204 . + 0 ID=Physo141421;Parent=Physo141421;rank=2 scaffold_98 . CDS 128620 128867 . + 0 ID=Physo141421;Parent=Physo141421;rank=3 scaffold_98 . CDS 128937 129043 . + 0 ID=Physo141421;Parent=Physo141421;rank=4 scaffold_98 . CDS 129645 129909 . + 0 ID=Physo141421;Parent=Physo141421;rank=5 scaffold_98 . repeat_region 133585 133719 . - . description=Polinton-1_PI scaffold_98 . repeat_region 133764 133830 . - . description=Polinton-1_PI scaffold_98 . repeat_region 133854 138533 . - . description=Polinton-1_PI scaffold_98 ensembl protein_coding_gene 130092 132934 . - . ID=Physo109391;biotype=protein_coding;description=Syntaxin 5 [Source:UniProtKB/TrEMBL%3BAcc:Q8S4W3];external_name=estExt_fgenesh1_pm.C_980007;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 130092 132934 . - . ID=Physo109391;Parent=Physo109391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 130092 130491 . - . ID=Physo109391.6;Parent=Physo109391;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=6 scaffold_98 . exon 130583 130986 . - . ID=Physo109391.5;Parent=Physo109391;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_98 . exon 131371 131861 . - . ID=Physo109391.4;Parent=Physo109391;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_98 . CDS 131702 131861 . - 0 ID=Physo109391;Parent=Physo109391;rank=4 scaffold_98 . CDS 131942 132557 . - 0 ID=Physo109391;Parent=Physo109391;rank=3 scaffold_98 . exon 131942 132557 . - . ID=Physo109391.3;Parent=Physo109391;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_98 . CDS 132641 132749 . - 0 ID=Physo109391;Parent=Physo109391;rank=2 scaffold_98 . exon 132641 132749 . - . ID=Physo109391.2;Parent=Physo109391;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . CDS 132838 132915 . - 0 ID=Physo109391;Parent=Physo109391;rank=1 scaffold_98 . exon 132838 132934 . - . ID=Physo109391.1;Parent=Physo109391;constitutive=1;ensembl_phase=-1;rank=1 scaffold_98 . exon 128150 128204 . + . ID=Physo141421.2;Parent=Physo141421;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . exon 128620 128867 . + . ID=Physo141421.3;Parent=Physo141421;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . exon 128937 129043 . + . ID=Physo141421.4;Parent=Physo141421;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_98 . exon 129645 130001 . + . ID=Physo141421.5;Parent=Physo141421;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_98 . repeat_region 144569 144604 . ? . description=dust scaffold_98 . repeat_region 147167 147216 . ? . description=dust scaffold_98 . repeat_region 147231 147570 . - . description=Polinton-1_PI scaffold_98 . repeat_region 148174 148483 . - . description=Polinton-1_PI scaffold_98 . repeat_region 148560 151887 . - . description=Polinton-1_PI scaffold_98 . repeat_region 151646 151698 . ? . description=trf scaffold_98 . repeat_region 152570 152609 . ? . description=trf scaffold_98 . repeat_region 152663 152940 . - . description=Polinton-1_PI scaffold_98 . repeat_region 152994 153060 . + . description=Polinton-1_PI scaffold_98 . biological_region 153070 153071 0.999 + . logic_name=eponine scaffold_98 . repeat_region 153083 153260 . + . description=Polinton-1_PI scaffold_98 . biological_region 156376 156379 0.999 + . logic_name=eponine scaffold_98 ensembl protein_coding_gene 149587 151191 . - . ID=Physo141424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980032;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 149587 151191 . - . ID=Physo141424;Parent=Physo141424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 149587 151191 . - 0 ID=Physo141424;Parent=Physo141424;rank=1 scaffold_98 . exon 149587 151191 . - . ID=Physo141424.1;Parent=Physo141424;constitutive=1;rank=1 scaffold_98 . repeat_region 160291 160312 . ? . description=dust scaffold_98 . repeat_region 161218 161231 . ? . description=dust scaffold_98 . repeat_region 165993 166009 . ? . description=dust scaffold_98 ensembl protein_coding_gene 163454 164839 . + . ID=Physo141425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980033;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 163454 164839 . + . ID=Physo141425;Parent=Physo141425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 163454 164839 . + 0 ID=Physo141425;Parent=Physo141425;rank=1 scaffold_98 . exon 163454 164839 . + . ID=Physo141425.1;Parent=Physo141425;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 165334 165981 . - . ID=Physo141426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980034;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 165334 165981 . - . ID=Physo141426;Parent=Physo141426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 165334 165623 . - . ID=Physo141426.2;Parent=Physo141426;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_98 . CDS 165459 165623 . - 0 ID=Physo141426;Parent=Physo141426;rank=2 scaffold_98 . CDS 165706 165981 . - 0 ID=Physo141426;Parent=Physo141426;rank=1 scaffold_98 . exon 165706 165981 . - . ID=Physo141426.1;Parent=Physo141426;constitutive=1;rank=1 scaffold_98 . biological_region 167345 167345 0.999 + . logic_name=eponine scaffold_98 . repeat_region 170853 170873 . ? . description=trf scaffold_98 . repeat_region 170875 170896 . ? . description=trf scaffold_98 . biological_region 170928 170929 0.999 + . logic_name=eponine scaffold_98 . biological_region 170965 170966 0.999 - . logic_name=eponine scaffold_98 . biological_region 171018 171022 0.999 + . logic_name=eponine scaffold_98 . biological_region 171087 171090 0.999 - . logic_name=eponine scaffold_98 . biological_region 171456 171456 0.999 + . logic_name=eponine scaffold_98 . biological_region 175679 175682 0.999 + . logic_name=eponine scaffold_98 . biological_region 175719 175722 0.999 - . logic_name=eponine scaffold_98 . biological_region 175921 175925 0.999 - . logic_name=eponine scaffold_98 ensembl protein_coding_gene 167792 171084 . - . ID=Physo141427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980035;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 167792 171084 . - . ID=Physo141427;Parent=Physo141427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 167792 168209 . - 0 ID=Physo141427;Parent=Physo141427;rank=10 scaffold_98 . exon 167792 168209 . - . ID=Physo141427.10;Parent=Physo141427;constitutive=1;ensembl_phase=2;rank=10 scaffold_98 . CDS 168289 168368 . - 0 ID=Physo141427;Parent=Physo141427;rank=9 scaffold_98 . exon 168289 168368 . - . ID=Physo141427.9;Parent=Physo141427;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_98 . CDS 168438 168504 . - 0 ID=Physo141427;Parent=Physo141427;rank=8 scaffold_98 . exon 168438 168504 . - . ID=Physo141427.8;Parent=Physo141427;constitutive=1;ensembl_phase=2;rank=8 scaffold_98 . CDS 168580 168786 . - 0 ID=Physo141427;Parent=Physo141427;rank=7 scaffold_98 . exon 168580 168786 . - . ID=Physo141427.7;Parent=Physo141427;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_98 . CDS 168856 169017 . - 0 ID=Physo141427;Parent=Physo141427;rank=6 scaffold_98 . exon 168856 169017 . - . ID=Physo141427.6;Parent=Physo141427;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_98 . CDS 169276 169351 . - 0 ID=Physo141427;Parent=Physo141427;rank=5 scaffold_98 . exon 169276 169351 . - . ID=Physo141427.5;Parent=Physo141427;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_98 . CDS 169471 169628 . - 0 ID=Physo141427;Parent=Physo141427;rank=4 scaffold_98 . exon 169471 169628 . - . ID=Physo141427.4;Parent=Physo141427;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_98 . CDS 169695 170476 . - 0 ID=Physo141427;Parent=Physo141427;rank=3 scaffold_98 . exon 169695 170476 . - . ID=Physo141427.3;Parent=Physo141427;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_98 . CDS 170563 170800 . - 0 ID=Physo141427;Parent=Physo141427;rank=2 scaffold_98 . exon 170563 170800 . - . ID=Physo141427.2;Parent=Physo141427;constitutive=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 170909 171084 . - 0 ID=Physo141427;Parent=Physo141427;rank=1 scaffold_98 . exon 170909 171084 . - . ID=Physo141427.1;Parent=Physo141427;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 ensembl protein_coding_gene 171310 172229 . + . ID=Physo141428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980036;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 171310 172229 . + . ID=Physo141428;Parent=Physo141428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 171310 172199 . + 0 ID=Physo141428;Parent=Physo141428;rank=1 scaffold_98 . exon 171310 172199 . + . ID=Physo141428.1;Parent=Physo141428;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 . CDS 172226 172229 . + 0 ID=Physo141428;Parent=Physo141428;rank=2 scaffold_98 . exon 172226 172229 . + . ID=Physo141428.2;Parent=Physo141428;constitutive=1;ensembl_phase=2;rank=2 scaffold_98 ensembl protein_coding_gene 175580 176756 . + . ID=Physo141429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980037;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 175580 176756 . + . ID=Physo141429;Parent=Physo141429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 175580 176106 . + 0 ID=Physo141429;Parent=Physo141429;rank=1 scaffold_98 . exon 175580 176106 . + . ID=Physo141429.1;Parent=Physo141429;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 . CDS 176436 176575 . + 0 ID=Physo141429;Parent=Physo141429;rank=2 scaffold_98 . exon 176436 176575 . + . ID=Physo141429.2;Parent=Physo141429;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 176734 176756 . + 0 ID=Physo141429;Parent=Physo141429;rank=3 scaffold_98 . exon 176734 176756 . + . ID=Physo141429.3;Parent=Physo141429;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . repeat_region 180734 181005 . ? . description=dust scaffold_98 . repeat_region 182088 183348 . ? . description=dust scaffold_98 . repeat_region 186624 193949 . ? . description=dust scaffold_98 ensembl protein_coding_gene 181646 185488 . - . ID=Physo141430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980038;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 181646 185488 . - . ID=Physo141430;Parent=Physo141430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 181646 181731 . - 0 ID=Physo141430;Parent=Physo141430;rank=6 scaffold_98 . exon 181646 181731 . - . ID=Physo141430.6;Parent=Physo141430;constitutive=1;ensembl_phase=1;rank=6 scaffold_98 . CDS 183573 184246 . - 0 ID=Physo141430;Parent=Physo141430;rank=5 scaffold_98 . exon 183573 184246 . - . ID=Physo141430.5;Parent=Physo141430;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_98 . CDS 184418 184424 . - 0 ID=Physo141430;Parent=Physo141430;rank=4 scaffold_98 . exon 184418 184424 . - . ID=Physo141430.4;Parent=Physo141430;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_98 . CDS 184616 184876 . - 0 ID=Physo141430;Parent=Physo141430;rank=3 scaffold_98 . exon 184616 184876 . - . ID=Physo141430.3;Parent=Physo141430;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 184956 185216 . - 0 ID=Physo141430;Parent=Physo141430;rank=2 scaffold_98 . exon 184956 185216 . - . ID=Physo141430.2;Parent=Physo141430;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_98 . CDS 185296 185488 . - 0 ID=Physo141430;Parent=Physo141430;rank=1 scaffold_98 . exon 185296 185488 . - . ID=Physo141430.1;Parent=Physo141430;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_98 . repeat_region 196543 198366 . ? . description=dust scaffold_98 . repeat_region 199398 205102 . ? . description=dust scaffold_98 . repeat_region 206432 206481 . ? . description=dust scaffold_98 ensembl protein_coding_gene 198485 199397 . - . ID=Physo141431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980039;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 198485 199397 . - . ID=Physo141431;Parent=Physo141431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 198485 199397 . - . ID=Physo141431.1;Parent=Physo141431;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_98 . CDS 198721 199389 . - 0 ID=Physo141431;Parent=Physo141431;rank=1 scaffold_98 . biological_region 207515 207519 0.999 + . logic_name=eponine scaffold_98 . repeat_region 209987 210011 . ? . description=trf scaffold_98 . biological_region 210082 210086 0.999 - . logic_name=eponine scaffold_98 . biological_region 214566 214567 0.999 + . logic_name=eponine scaffold_98 . biological_region 215765 215771 0.999 + . logic_name=eponine scaffold_98 . repeat_region 215798 216524 . ? . description=trf scaffold_98 . biological_region 215914 215916 0.999 - . logic_name=eponine scaffold_98 ensembl protein_coding_gene 215712 216725 . - . ID=Physo141432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980040;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 215712 216725 . - . ID=Physo141432;Parent=Physo141432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 215712 216112 . - 0 ID=Physo141432;Parent=Physo141432;rank=3 scaffold_98 . exon 215712 216112 . - . ID=Physo141432.3;Parent=Physo141432;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 216154 216416 . - 0 ID=Physo141432;Parent=Physo141432;rank=2 scaffold_98 . exon 216154 216416 . - . ID=Physo141432.2;Parent=Physo141432;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 216457 216725 . - 0 ID=Physo141432;Parent=Physo141432;rank=1 scaffold_98 . repeat_region 221171 221656 . ? . description=dust scaffold_98 . repeat_region 221657 222137 . ? . description=dust scaffold_98 . repeat_region 223706 224645 . ? . description=dust scaffold_98 . repeat_region 225641 231146 . ? . description=dust scaffold_98 . exon 216457 216725 . - . ID=Physo141432.1;Parent=Physo141432;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 ensembl protein_coding_gene 222614 222922 . + . ID=Physo141433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980041;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 222614 222922 . + . ID=Physo141433;Parent=Physo141433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 222614 222922 . + 0 ID=Physo141433;Parent=Physo141433;rank=1 scaffold_98 . exon 222614 222922 . + . ID=Physo141433.1;Parent=Physo141433;constitutive=1;rank=1 scaffold_98 . biological_region 235880 235887 0.999 + . logic_name=eponine scaffold_98 . biological_region 235955 235956 0.999 + . logic_name=eponine scaffold_98 ensembl protein_coding_gene 233264 235715 . + . ID=Physo141434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980042;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 233264 235715 . + . ID=Physo141434;Parent=Physo141434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 233264 233930 . + 0 ID=Physo141434;Parent=Physo141434;rank=1 scaffold_98 . exon 233264 233930 . + . ID=Physo141434.1;Parent=Physo141434;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_98 . CDS 234139 234273 . + 0 ID=Physo141434;Parent=Physo141434;rank=2 scaffold_98 . exon 234139 234273 . + . ID=Physo141434.2;Parent=Physo141434;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_98 . CDS 235067 235479 . + 0 ID=Physo141434;Parent=Physo141434;rank=3 scaffold_98 . exon 235067 235715 . + . ID=Physo141434.3;Parent=Physo141434;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_98 ensembl protein_coding_gene 235682 236590 . - . ID=Physo141435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980043;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 235682 236590 . - . ID=Physo141435;Parent=Physo141435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 235682 236590 . - . ID=Physo141435.1;Parent=Physo141435;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_98 . CDS 235793 236485 . - 0 ID=Physo141435;Parent=Physo141435;rank=1 scaffold_98 . repeat_region 237083 237327 . ? . description=dust scaffold_98 . repeat_region 238074 238123 . ? . description=dust scaffold_98 . repeat_region 242994 243029 . ? . description=trf scaffold_98 ensembl protein_coding_gene 242441 244459 . - . ID=Physo141436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980044;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 242441 244459 . - . ID=Physo141436;Parent=Physo141436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 242441 242848 . - . ID=Physo141436.3;Parent=Physo141436;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_98 . CDS 242499 242848 . - 0 ID=Physo141436;Parent=Physo141436;rank=3 scaffold_98 . CDS 242893 244087 . - 0 ID=Physo141436;Parent=Physo141436;rank=2 scaffold_98 . exon 242893 244087 . - . ID=Physo141436.2;Parent=Physo141436;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_98 . CDS 244148 244459 . - 0 ID=Physo141436;Parent=Physo141436;rank=1 scaffold_98 . exon 244148 244459 . - . ID=Physo141436.1;Parent=Physo141436;constitutive=1;rank=1 scaffold_98 . biological_region 247697 247698 0.999 - . logic_name=eponine scaffold_98 ensembl protein_coding_gene 249285 251297 . + . ID=Physo141437;biotype=protein_coding;description=PsAvh456 [Source:UniProtKB/TrEMBL%3BAcc:E0W5K2];external_name=estExt_fgenesh1_pg.C_980045;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 249285 251297 . + . ID=Physo141437;Parent=Physo141437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 249285 251297 . + 0 ID=Physo141437;Parent=Physo141437;rank=1 scaffold_98 . exon 249285 251297 . + . ID=Physo141437.1;Parent=Physo141437;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 254727 255515 . + . ID=Physo141438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980046;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 254727 255515 . + . ID=Physo141438;Parent=Physo141438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 254727 255193 . + 0 ID=Physo141438;Parent=Physo141438;rank=1 scaffold_98 . exon 254727 255193 . + . ID=Physo141438.1;Parent=Physo141438;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_98 . CDS 255240 255466 . + 0 ID=Physo141438;Parent=Physo141438;rank=2 scaffold_98 . exon 255240 255466 . + . ID=Physo141438.2;Parent=Physo141438;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_98 . CDS 255505 255515 . + 0 ID=Physo141438;Parent=Physo141438;rank=3 scaffold_98 . exon 255505 255515 . + . ID=Physo141438.3;Parent=Physo141438;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . repeat_region 263217 263271 . ? . description=trf scaffold_98 ensembl protein_coding_gene 261329 262751 . - . ID=Physo109392;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980008;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 261329 262751 . - . ID=Physo109392;Parent=Physo109392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 261329 261738 . - . ID=Physo109392.6;Parent=Physo109392;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_98 . CDS 261384 261738 . - 0 ID=Physo109392;Parent=Physo109392;rank=6 scaffold_98 . CDS 261839 262107 . - 0 ID=Physo109392;Parent=Physo109392;rank=5 scaffold_98 . exon 261839 262107 . - . ID=Physo109392.5;Parent=Physo109392;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_98 . CDS 262191 262289 . - 0 ID=Physo109392;Parent=Physo109392;rank=4 scaffold_98 . exon 262191 262289 . - . ID=Physo109392.4;Parent=Physo109392;constitutive=1;rank=4 scaffold_98 . CDS 262382 262521 . - 0 ID=Physo109392;Parent=Physo109392;rank=3 scaffold_98 . exon 262382 262521 . - . ID=Physo109392.3;Parent=Physo109392;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 262606 262647 . - 0 ID=Physo109392;Parent=Physo109392;rank=2 scaffold_98 . exon 262606 262647 . - . ID=Physo109392.2;Parent=Physo109392;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_98 . CDS 262697 262751 . - 0 ID=Physo109392;Parent=Physo109392;rank=1 scaffold_98 . exon 262697 262751 . - . ID=Physo109392.1;Parent=Physo109392;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_98 ensembl protein_coding_gene 265388 266416 . + . ID=Physo109393;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980009;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 265388 266416 . + . ID=Physo109393;Parent=Physo109393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 265388 265408 . + 0 ID=Physo109393;Parent=Physo109393;rank=1 scaffold_98 . exon 265388 265408 . + . ID=Physo109393.1;Parent=Physo109393;constitutive=1;rank=1 scaffold_98 . CDS 265514 266254 . + 0 ID=Physo109393;Parent=Physo109393;rank=2 scaffold_98 . CDS 266291 266416 . + 0 ID=Physo109393;Parent=Physo109393;rank=3 scaffold_98 ensembl protein_coding_gene 258648 259340 . + . ID=Physo141439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980047;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 258648 259340 . + . ID=Physo141439;Parent=Physo141439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 258648 259340 . + 0 ID=Physo141439;Parent=Physo141439;rank=1 scaffold_98 . exon 258648 259340 . + . ID=Physo141439.1;Parent=Physo141439;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 259436 260224 . + . ID=Physo141440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980048;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 259436 260224 . + . ID=Physo141440;Parent=Physo141440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 259436 260224 . + 0 ID=Physo141440;Parent=Physo141440;rank=1 scaffold_98 . exon 259436 260224 . + . ID=Physo141440.1;Parent=Physo141440;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 260597 261354 . + . ID=Physo141441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980049;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 260597 261354 . + . ID=Physo141441;Parent=Physo141441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 260597 260656 . + . ID=Physo141441.1;Parent=Physo141441;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_98 . CDS 260599 260656 . + 0 ID=Physo141441;Parent=Physo141441;rank=1 scaffold_98 . CDS 260753 260851 . + 0 ID=Physo141441;Parent=Physo141441;rank=2 scaffold_98 . exon 260753 260851 . + . ID=Physo141441.2;Parent=Physo141441;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_98 . CDS 260942 261069 . + 0 ID=Physo141441;Parent=Physo141441;rank=3 scaffold_98 . exon 260942 261069 . + . ID=Physo141441.3;Parent=Physo141441;constitutive=1;ensembl_phase=1;rank=3 scaffold_98 . CDS 261176 261352 . + 0 ID=Physo141441;Parent=Physo141441;rank=4 scaffold_98 . exon 261176 261354 . + . ID=Physo141441.4;Parent=Physo141441;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_98 ensembl protein_coding_gene 264168 264913 . + . ID=Physo141443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980051;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 264168 264913 . + . ID=Physo141443;Parent=Physo141443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 264168 264752 . + 0 ID=Physo141443;Parent=Physo141443;rank=1 scaffold_98 . exon 264168 264913 . + . ID=Physo141443.1;Parent=Physo141443;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_98 . biological_region 265561 265566 0.999 - . logic_name=eponine scaffold_98 . biological_region 265590 265593 0.999 - . logic_name=eponine scaffold_98 . repeat_region 268312 268320 . ? . description=dust scaffold_98 . biological_region 268343 268344 0.999 - . logic_name=eponine scaffold_98 . biological_region 268356 268357 0.999 + . logic_name=eponine scaffold_98 . repeat_region 271454 271462 . ? . description=dust scaffold_98 . repeat_region 275217 275224 . ? . description=dust scaffold_98 . exon 265514 266254 . + . ID=Physo109393.2;Parent=Physo109393;constitutive=1;rank=2 scaffold_98 . exon 266291 266416 . + . ID=Physo109393.3;Parent=Physo109393;constitutive=1;rank=3 scaffold_98 ensembl protein_coding_gene 266749 267534 . - . ID=Physo109394;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980010;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 266749 267534 . - . ID=Physo109394;Parent=Physo109394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 266749 267373 . - . ID=Physo109394.2;Parent=Physo109394;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_98 . CDS 266842 267373 . - 0 ID=Physo109394;Parent=Physo109394;rank=2 scaffold_98 . CDS 267490 267515 . - 0 ID=Physo109394;Parent=Physo109394;rank=1 scaffold_98 . exon 267490 267534 . - . ID=Physo109394.1;Parent=Physo109394;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_98 ensembl protein_coding_gene 269091 269549 . - . ID=Physo141446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980054;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 269091 269549 . - . ID=Physo141446;Parent=Physo141446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 269091 269549 . - 0 ID=Physo141446;Parent=Physo141446;rank=1 scaffold_98 . exon 269091 269549 . - . ID=Physo141446.1;Parent=Physo141446;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 270368 270826 . - . ID=Physo141447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980055;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 270368 270826 . - . ID=Physo141447;Parent=Physo141447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 270368 270826 . - 0 ID=Physo141447;Parent=Physo141447;rank=1 scaffold_98 . exon 270368 270826 . - . ID=Physo141447.1;Parent=Physo141447;constitutive=1;rank=1 scaffold_98 . repeat_region 279506 279538 . ? . description=trf scaffold_98 . repeat_region 281399 281436 . ? . description=trf scaffold_98 ensembl protein_coding_gene 275598 276272 . + . ID=Physo109395;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980011;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 275598 276272 . + . ID=Physo109395;Parent=Physo109395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 275598 276272 . + 0 ID=Physo109395;Parent=Physo109395;rank=1 scaffold_98 . exon 275598 276272 . + . ID=Physo109395.1;Parent=Physo109395;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 279084 280127 . + . ID=Physo141449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980057;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 279084 280127 . + . ID=Physo141449;Parent=Physo141449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 279084 280127 . + 0 ID=Physo141449;Parent=Physo141449;rank=1 scaffold_98 . exon 279084 280127 . + . ID=Physo141449.1;Parent=Physo141449;constitutive=1;rank=1 scaffold_98 . repeat_region 287618 287733 . + . description=Gypsy-1-LTR_PI scaffold_98 . repeat_region 287743 293533 . + . description=Gypsy-2-I_PI-int scaffold_98 . biological_region 293958 293962 0.999 + . logic_name=eponine scaffold_98 . repeat_region 294055 294284 . + . description=Gypsy-2-I_PI-int scaffold_98 . repeat_region 294363 294478 . + . description=Gypsy-1-LTR_PI scaffold_98 ensembl protein_coding_gene 291506 291865 . + . ID=Physo109396;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_980012;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 291506 291865 . + . ID=Physo109396;Parent=Physo109396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 291506 291865 . + 0 ID=Physo109396;Parent=Physo109396;rank=1 scaffold_98 . exon 291506 291865 . + . ID=Physo109396.1;Parent=Physo109396;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 286070 291343 . + . ID=Physo141450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980058;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 286070 291343 . + . ID=Physo141450;Parent=Physo141450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 286070 286744 . + 0 ID=Physo141450;Parent=Physo141450;rank=1 scaffold_98 . exon 286070 286744 . + . ID=Physo141450.1;Parent=Physo141450;constitutive=1;rank=1 scaffold_98 . CDS 286850 287448 . + 0 ID=Physo141450;Parent=Physo141450;rank=2 scaffold_98 . exon 286850 287448 . + . ID=Physo141450.2;Parent=Physo141450;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_98 . CDS 287556 287559 . + 0 ID=Physo141450;Parent=Physo141450;rank=3 scaffold_98 . exon 287556 287559 . + . ID=Physo141450.3;Parent=Physo141450;constitutive=1;ensembl_phase=2;rank=3 scaffold_98 . CDS 287766 288594 . + 0 ID=Physo141450;Parent=Physo141450;rank=4 scaffold_98 . exon 287766 288594 . + . ID=Physo141450.4;Parent=Physo141450;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_98 . CDS 288723 288951 . + 0 ID=Physo141450;Parent=Physo141450;rank=5 scaffold_98 . exon 288723 288951 . + . ID=Physo141450.5;Parent=Physo141450;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_98 . CDS 289166 289921 . + 0 ID=Physo141450;Parent=Physo141450;rank=6 scaffold_98 . exon 289166 289921 . + . ID=Physo141450.6;Parent=Physo141450;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_98 . CDS 289966 291343 . + 0 ID=Physo141450;Parent=Physo141450;rank=7 scaffold_98 . exon 289966 291343 . + . ID=Physo141450.7;Parent=Physo141450;constitutive=1;ensembl_phase=2;rank=7 scaffold_98 ensembl protein_coding_gene 292619 295931 . - . ID=Physo141452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980060;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 292619 295931 . - . ID=Physo141452;Parent=Physo141452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 292619 294085 . - 0 ID=Physo141452;Parent=Physo141452;rank=2 scaffold_98 . exon 292619 294085 . - . ID=Physo141452.2;Parent=Physo141452;constitutive=1;rank=2 scaffold_98 . CDS 294684 295931 . - 0 ID=Physo141452;Parent=Physo141452;rank=1 scaffold_98 . exon 294684 295931 . - . ID=Physo141452.1;Parent=Physo141452;constitutive=1;rank=1 scaffold_98 . repeat_region 300975 300982 . ? . description=dust scaffold_98 . repeat_region 301352 301361 . ? . description=dust scaffold_98 . repeat_region 301726 301771 . ? . description=dust scaffold_98 . repeat_region 301977 302036 . ? . description=trf scaffold_98 . repeat_region 303635 303693 . ? . description=dust scaffold_98 . repeat_region 303706 303743 . ? . description=trf scaffold_98 . repeat_region 303706 303761 . ? . description=trf scaffold_98 ensembl protein_coding_gene 296571 297634 . - . ID=Physo141453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980061;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 296571 297634 . - . ID=Physo141453;Parent=Physo141453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . exon 296571 297634 . - . ID=Physo141453.1;Parent=Physo141453;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_98 . CDS 296741 297634 . - 0 ID=Physo141453;Parent=Physo141453;rank=1 scaffold_98 ensembl protein_coding_gene 301974 302291 . - . ID=Physo141454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980062;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 301974 302291 . - . ID=Physo141454;Parent=Physo141454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 301974 302291 . - 0 ID=Physo141454;Parent=Physo141454;rank=1 scaffold_98 . exon 301974 302291 . - . ID=Physo141454.1;Parent=Physo141454;constitutive=1;rank=1 scaffold_98 ensembl protein_coding_gene 303451 303768 . + . ID=Physo141455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_980063;logic_name=jgi_physo1_1 scaffold_98 ensembl transcript 303451 303768 . + . ID=Physo141455;Parent=Physo141455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_98 . CDS 303451 303768 . + 0 ID=Physo141455;Parent=Physo141455;rank=1 scaffold_98 . exon 303451 303768 . + . ID=Physo141455.1;Parent=Physo141455;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_91 1 307824 scaffold_91 . repeat_region 1054 22888 . ? . description=dust scaffold_91 . repeat_region 1054 22888 . ? . description=dust scaffold_91 . repeat_region 23176 23187 . ? . description=dust scaffold_91 . repeat_region 23218 23261 . ? . description=trf scaffold_91 . repeat_region 26278 26292 . ? . description=dust scaffold_91 . biological_region 28995 28999 0.999 - . logic_name=eponine scaffold_91 . biological_region 29392 29394 0.999 + . logic_name=eponine scaffold_91 . biological_region 29421 29426 0.999 - . logic_name=eponine scaffold_91 . biological_region 29437 29445 0.999 - . logic_name=eponine scaffold_91 . biological_region 29496 29499 0.999 + . logic_name=eponine scaffold_91 . biological_region 29502 29506 0.999 - . logic_name=eponine scaffold_91 . repeat_region 29736 29756 . ? . description=trf scaffold_91 ensembl protein_coding_gene 25270 25587 . - . ID=Physo140876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910001;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 25270 25587 . - . ID=Physo140876;Parent=Physo140876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 25270 25587 . - 0 ID=Physo140876;Parent=Physo140876;rank=1 scaffold_91 . exon 25270 25587 . - . ID=Physo140876.1;Parent=Physo140876;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 29691 31106 . + . ID=Physo140877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910002;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 29691 31106 . + . ID=Physo140877;Parent=Physo140877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 29691 29883 . + . ID=Physo140877.1;Parent=Physo140877;constitutive=1;ensembl_phase=-1;rank=1 scaffold_91 . CDS 29719 29883 . + 0 ID=Physo140877;Parent=Physo140877;rank=1 scaffold_91 . CDS 29951 30931 . + 0 ID=Physo140877;Parent=Physo140877;rank=2 scaffold_91 ensembl protein_coding_gene 33760 35625 . + . ID=Physo121348;biotype=protein_coding;external_name=estExt_Genewise1.C_910005;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 33760 35625 . + . ID=Physo121348;Parent=Physo121348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 33760 34955 . + . ID=Physo121348.1;Parent=Physo121348;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_91 . CDS 33973 34955 . + 0 ID=Physo121348;Parent=Physo121348;rank=1 scaffold_91 . CDS 35037 35318 . + 0 ID=Physo121348;Parent=Physo121348;rank=2 scaffold_91 . exon 35037 35318 . + . ID=Physo121348.2;Parent=Physo121348;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_91 . CDS 35400 35625 . + 0 ID=Physo121348;Parent=Physo121348;rank=3 scaffold_91 . exon 35400 35625 . + . ID=Physo121348.3;Parent=Physo121348;constitutive=1;ensembl_phase=2;rank=3 scaffold_91 . exon 29951 31106 . + . ID=Physo140877.2;Parent=Physo140877;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_91 ensembl protein_coding_gene 37650 47576 . + . ID=Physo140880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910005;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 37650 47576 . + . ID=Physo140880;Parent=Physo140880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 37650 46013 . + 0 ID=Physo140880;Parent=Physo140880;rank=1 scaffold_91 . exon 37650 46013 . + . ID=Physo140880.1;Parent=Physo140880;constitutive=1;rank=1 scaffold_91 . CDS 46073 47536 . + 0 ID=Physo140880;Parent=Physo140880;rank=2 scaffold_91 . biological_region 39741 39745 0.999 + . logic_name=eponine scaffold_91 . biological_region 39763 39766 0.999 - . logic_name=eponine scaffold_91 . biological_region 40010 40012 0.999 + . logic_name=eponine scaffold_91 . repeat_region 41095 41135 . ? . description=trf scaffold_91 . biological_region 45759 45761 0.999 - . logic_name=eponine scaffold_91 . biological_region 46771 46771 0.999 + . logic_name=eponine scaffold_91 . repeat_region 47549 47566 . ? . description=dust scaffold_91 . biological_region 48047 48049 0.999 + . logic_name=eponine scaffold_91 . repeat_region 49068 49075 . ? . description=dust scaffold_91 . exon 46073 47576 . + . ID=Physo140880.2;Parent=Physo140880;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_91 ensembl protein_coding_gene 47758 53778 . - . ID=Physo158217;biotype=protein_coding;external_name=C_scaffold_91000004;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 47758 53778 . - . ID=Physo158217;Parent=Physo158217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 47758 48351 . - 0 ID=Physo158217;Parent=Physo158217;rank=15 scaffold_91 . exon 47758 48351 . - . ID=Physo158217.15;Parent=Physo158217;constitutive=1;rank=15 scaffold_91 . CDS 48430 48558 . - 0 ID=Physo158217;Parent=Physo158217;rank=14 scaffold_91 . exon 48430 48558 . - . ID=Physo158217.14;Parent=Physo158217;constitutive=1;rank=14 scaffold_91 . CDS 48657 48832 . - 0 ID=Physo158217;Parent=Physo158217;rank=13 scaffold_91 . exon 48657 48832 . - . ID=Physo158217.13;Parent=Physo158217;constitutive=1;ensembl_phase=1;rank=13 scaffold_91 . CDS 49301 49592 . - 0 ID=Physo158217;Parent=Physo158217;rank=12 scaffold_91 . exon 49301 49592 . - . ID=Physo158217.12;Parent=Physo158217;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_91 . CDS 49730 49945 . - 0 ID=Physo158217;Parent=Physo158217;rank=11 scaffold_91 . CDS 50019 50276 . - 0 ID=Physo158217;Parent=Physo158217;rank=10 scaffold_91 . CDS 50358 50540 . - 0 ID=Physo158217;Parent=Physo158217;rank=9 scaffold_91 . CDS 50628 50772 . - 0 ID=Physo158217;Parent=Physo158217;rank=8 scaffold_91 . CDS 50857 51165 . - 0 ID=Physo158217;Parent=Physo158217;rank=7 scaffold_91 . CDS 51193 51518 . - 0 ID=Physo158217;Parent=Physo158217;rank=6 scaffold_91 . CDS 51595 51822 . - 0 ID=Physo158217;Parent=Physo158217;rank=5 scaffold_91 . CDS 51921 52050 . - 0 ID=Physo158217;Parent=Physo158217;rank=4 scaffold_91 . CDS 52251 52895 . - 0 ID=Physo158217;Parent=Physo158217;rank=3 scaffold_91 . CDS 53019 53492 . - 0 ID=Physo158217;Parent=Physo158217;rank=2 scaffold_91 . CDS 53594 53778 . - 0 ID=Physo158217;Parent=Physo158217;rank=1 scaffold_91 ensembl protein_coding_gene 55058 58051 . + . ID=Physo140883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910008;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 55058 58051 . + . ID=Physo140883;Parent=Physo140883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 55058 58051 . + 0 ID=Physo140883;Parent=Physo140883;rank=1 scaffold_91 . exon 55058 58051 . + . ID=Physo140883.1;Parent=Physo140883;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 58462 61065 . - . ID=Physo140884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910009;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 58462 61065 . - . ID=Physo140884;Parent=Physo140884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 58462 61065 . - 0 ID=Physo140884;Parent=Physo140884;rank=1 scaffold_91 . exon 58462 61065 . - . ID=Physo140884.1;Parent=Physo140884;constitutive=1;rank=1 scaffold_91 . exon 49730 49945 . - . ID=Physo158217.11;Parent=Physo158217;constitutive=1;rank=11 scaffold_91 . exon 50019 50276 . - . ID=Physo158217.10;Parent=Physo158217;constitutive=1;rank=10 scaffold_91 . exon 50358 50540 . - . ID=Physo158217.9;Parent=Physo158217;constitutive=1;rank=9 scaffold_91 . exon 50628 50772 . - . ID=Physo158217.8;Parent=Physo158217;constitutive=1;ensembl_phase=2;rank=8 scaffold_91 . exon 50857 51165 . - . ID=Physo158217.7;Parent=Physo158217;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_91 . exon 51193 51518 . - . ID=Physo158217.6;Parent=Physo158217;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_91 . exon 51595 51822 . - . ID=Physo158217.5;Parent=Physo158217;constitutive=1;rank=5 scaffold_91 . exon 51921 52050 . - . ID=Physo158217.4;Parent=Physo158217;constitutive=1;ensembl_phase=2;rank=4 scaffold_91 . exon 52251 52895 . - . ID=Physo158217.3;Parent=Physo158217;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_91 . exon 53019 53492 . - . ID=Physo158217.2;Parent=Physo158217;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_91 . exon 53594 53778 . - . ID=Physo158217.1;Parent=Physo158217;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 . biological_region 60737 60738 0.999 + . logic_name=eponine scaffold_91 . biological_region 60807 60814 0.999 - . logic_name=eponine scaffold_91 . biological_region 60986 60987 0.999 - . logic_name=eponine scaffold_91 . repeat_region 66274 67207 . ? . description=dust scaffold_91 . biological_region 69063 69065 0.999 + . logic_name=eponine scaffold_91 . biological_region 69180 69183 0.999 - . logic_name=eponine scaffold_91 ensembl protein_coding_gene 61582 62022 . - . ID=Physo140885;biotype=protein_coding;description=PsAvh176 [Source:UniProtKB/TrEMBL%3BAcc:E0W5J3];external_name=estExt_fgenesh1_pg.C_910010;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 61582 62022 . - . ID=Physo140885;Parent=Physo140885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 61582 62022 . - 0 ID=Physo140885;Parent=Physo140885;rank=1 scaffold_91 . exon 61582 62022 . - . ID=Physo140885.1;Parent=Physo140885;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 62892 64920 . + . ID=Physo140886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910011;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 62892 64920 . + . ID=Physo140886;Parent=Physo140886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 62892 63246 . + 0 ID=Physo140886;Parent=Physo140886;rank=1 scaffold_91 . exon 62892 63246 . + . ID=Physo140886.1;Parent=Physo140886;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 . CDS 63398 64920 . + 0 ID=Physo140886;Parent=Physo140886;rank=2 scaffold_91 . exon 63398 64920 . + . ID=Physo140886.2;Parent=Physo140886;constitutive=1;ensembl_phase=1;rank=2 scaffold_91 . repeat_region 76842 76882 . ? . description=trf scaffold_91 . repeat_region 80436 80443 . ? . description=dust scaffold_91 . biological_region 85201 85204 0.999 + . logic_name=eponine scaffold_91 . biological_region 85367 85371 0.999 - . logic_name=eponine scaffold_91 . biological_region 87839 87839 0.999 + . logic_name=eponine scaffold_91 . biological_region 88549 88552 0.999 + . logic_name=eponine scaffold_91 . biological_region 88558 88564 0.999 - . logic_name=eponine scaffold_91 . biological_region 88588 88592 0.999 + . logic_name=eponine scaffold_91 . biological_region 88617 88618 0.999 + . logic_name=eponine scaffold_91 . biological_region 88828 88828 0.999 - . logic_name=eponine scaffold_91 ensembl protein_coding_gene 87702 88869 . - . ID=Physo121359;biotype=protein_coding;external_name=estExt_Genewise1.C_910016;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 87702 88869 . - . ID=Physo121359;Parent=Physo121359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 87702 88173 . - . ID=Physo121359.2;Parent=Physo121359;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_91 . CDS 87755 88173 . - 0 ID=Physo121359;Parent=Physo121359;rank=2 scaffold_91 . CDS 88260 88746 . - 0 ID=Physo121359;Parent=Physo121359;rank=1 scaffold_91 . exon 88260 88869 . - . ID=Physo121359.1;Parent=Physo121359;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_91 ensembl protein_coding_gene 85329 87680 . + . ID=Physo140887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910012;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 85329 87680 . + . ID=Physo140887;Parent=Physo140887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 85329 85515 . + 0 ID=Physo140887;Parent=Physo140887;rank=1 scaffold_91 . exon 85329 85515 . + . ID=Physo140887.1;Parent=Physo140887;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 . CDS 85657 87680 . + 0 ID=Physo140887;Parent=Physo140887;rank=2 scaffold_91 . exon 85657 87680 . + . ID=Physo140887.2;Parent=Physo140887;constitutive=1;ensembl_phase=1;rank=2 scaffold_91 ensembl protein_coding_gene 89227 90167 . + . ID=Physo140889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910014;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 89227 90167 . + . ID=Physo140889;Parent=Physo140889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 89227 89544 . + 0 ID=Physo140889;Parent=Physo140889;rank=1 scaffold_91 . exon 89227 89544 . + . ID=Physo140889.1;Parent=Physo140889;constitutive=1;rank=1 scaffold_91 . CDS 89652 90167 . + 0 ID=Physo140889;Parent=Physo140889;rank=2 scaffold_91 . repeat_region 96305 96334 . ? . description=trf scaffold_91 ensembl protein_coding_gene 96677 98173 . - . ID=Physo109327;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_910002;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 96677 98173 . - . ID=Physo109327;Parent=Physo109327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 96677 96784 . - 0 ID=Physo109327;Parent=Physo109327;rank=4 scaffold_91 . exon 96677 96784 . - . ID=Physo109327.4;Parent=Physo109327;constitutive=1;rank=4 scaffold_91 . CDS 96806 97677 . - 0 ID=Physo109327;Parent=Physo109327;rank=3 scaffold_91 . exon 96806 97677 . - . ID=Physo109327.3;Parent=Physo109327;constitutive=1;ensembl_phase=1;rank=3 scaffold_91 . CDS 97704 98003 . - 0 ID=Physo109327;Parent=Physo109327;rank=2 scaffold_91 . exon 97704 98003 . - . ID=Physo109327.2;Parent=Physo109327;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_91 . CDS 98074 98173 . - 0 ID=Physo109327;Parent=Physo109327;rank=1 scaffold_91 . exon 98074 98173 . - . ID=Physo109327.1;Parent=Physo109327;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 . exon 89652 90167 . + . ID=Physo140889.2;Parent=Physo140889;constitutive=1;rank=2 scaffold_91 ensembl protein_coding_gene 90243 90971 . - . ID=Physo140890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910015;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 90243 90971 . - . ID=Physo140890;Parent=Physo140890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 90243 90971 . - 0 ID=Physo140890;Parent=Physo140890;rank=1 scaffold_91 . exon 90243 90971 . - . ID=Physo140890.1;Parent=Physo140890;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 98283 100272 . + . ID=Physo140892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910017;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 98283 100272 . + . ID=Physo140892;Parent=Physo140892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 98283 98314 . + 0 ID=Physo140892;Parent=Physo140892;rank=1 scaffold_91 . exon 98283 98314 . + . ID=Physo140892.1;Parent=Physo140892;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 . CDS 98352 100272 . + 0 ID=Physo140892;Parent=Physo140892;rank=2 scaffold_91 . exon 98352 100272 . + . ID=Physo140892.2;Parent=Physo140892;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 . biological_region 101157 101157 0.999 - . logic_name=eponine scaffold_91 . biological_region 102812 102815 0.999 - . logic_name=eponine scaffold_91 . biological_region 103121 103125 0.999 + . logic_name=eponine scaffold_91 . repeat_region 103504 103544 . ? . description=dust scaffold_91 . repeat_region 103669 103832 . ? . description=dust scaffold_91 . repeat_region 104198 104246 . ? . description=dust scaffold_91 . biological_region 104306 104321 0.999 + . logic_name=eponine scaffold_91 . biological_region 104333 104335 0.999 + . logic_name=eponine scaffold_91 . biological_region 104359 104363 0.999 - . logic_name=eponine scaffold_91 . biological_region 104373 104378 0.999 + . logic_name=eponine scaffold_91 . biological_region 104397 104400 0.999 + . logic_name=eponine scaffold_91 . biological_region 104407 104413 0.999 - . logic_name=eponine scaffold_91 . biological_region 104417 104417 0.999 + . logic_name=eponine scaffold_91 . biological_region 104429 104437 0.999 - . logic_name=eponine scaffold_91 . repeat_region 104529 104554 . ? . description=dust scaffold_91 . repeat_region 104822 105007 . ? . description=dust scaffold_91 . repeat_region 106398 106447 . ? . description=dust scaffold_91 . repeat_region 107448 107497 . ? . description=dust scaffold_91 . biological_region 108388 108390 0.999 - . logic_name=eponine scaffold_91 ensembl protein_coding_gene 102272 102929 . + . ID=Physo109328;biotype=protein_coding;description=Calmodulin [Source:UniProtKB/TrEMBL%3BAcc:B5AYD6];external_name=CAM1;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 102272 102929 . + . ID=Physo109328;Parent=Physo109328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 102272 102929 . + . ID=Physo109328.1;Parent=Physo109328;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_91 . CDS 102377 102826 . + 0 ID=Physo109328;Parent=Physo109328;rank=1 scaffold_91 ensembl protein_coding_gene 100311 101281 . - . ID=Physo140893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910018;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 100311 101281 . - . ID=Physo140893;Parent=Physo140893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 100311 100850 . - . ID=Physo140893.2;Parent=Physo140893;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_91 . CDS 100385 100850 . - 0 ID=Physo140893;Parent=Physo140893;rank=2 scaffold_91 . CDS 100932 101281 . - 0 ID=Physo140893;Parent=Physo140893;rank=1 scaffold_91 . exon 100932 101281 . - . ID=Physo140893.1;Parent=Physo140893;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 ensembl protein_coding_gene 104187 105688 . + . ID=Physo140895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910020;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 104187 105688 . + . ID=Physo140895;Parent=Physo140895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 104187 104764 . + 0 ID=Physo140895;Parent=Physo140895;rank=1 scaffold_91 . exon 104187 104764 . + . ID=Physo140895.1;Parent=Physo140895;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 . CDS 105064 105688 . + 0 ID=Physo140895;Parent=Physo140895;rank=2 scaffold_91 . exon 105064 105688 . + . ID=Physo140895.2;Parent=Physo140895;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 ensembl protein_coding_gene 107533 111080 . - . ID=Physo140896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910021;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 107533 111080 . - . ID=Physo140896;Parent=Physo140896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 107533 107588 . - 0 ID=Physo140896;Parent=Physo140896;rank=8 scaffold_91 . exon 107533 107588 . - . ID=Physo140896.8;Parent=Physo140896;constitutive=1;ensembl_phase=1;rank=8 scaffold_91 . CDS 107693 107828 . - 0 ID=Physo140896;Parent=Physo140896;rank=7 scaffold_91 . exon 107693 107828 . - . ID=Physo140896.7;Parent=Physo140896;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_91 . CDS 108217 108506 . - 0 ID=Physo140896;Parent=Physo140896;rank=6 scaffold_91 . exon 108217 108506 . - . ID=Physo140896.6;Parent=Physo140896;constitutive=1;ensembl_phase=1;rank=6 scaffold_91 . CDS 108578 108870 . - 0 ID=Physo140896;Parent=Physo140896;rank=5 scaffold_91 . exon 108578 108870 . - . ID=Physo140896.5;Parent=Physo140896;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_91 . CDS 108952 109458 . - 0 ID=Physo140896;Parent=Physo140896;rank=4 scaffold_91 . exon 108952 109458 . - . ID=Physo140896.4;Parent=Physo140896;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_91 . CDS 109952 110174 . - 0 ID=Physo140896;Parent=Physo140896;rank=3 scaffold_91 . CDS 110246 110538 . - 0 ID=Physo140896;Parent=Physo140896;rank=2 scaffold_91 . CDS 110620 111080 . - 0 ID=Physo140896;Parent=Physo140896;rank=1 scaffold_91 . exon 109952 110174 . - . ID=Physo140896.3;Parent=Physo140896;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_91 . exon 110246 110538 . - . ID=Physo140896.2;Parent=Physo140896;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_91 . exon 110620 111080 . - . ID=Physo140896.1;Parent=Physo140896;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 ensembl protein_coding_gene 114699 120974 . + . ID=Physo140897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910022;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 114699 120974 . + . ID=Physo140897;Parent=Physo140897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 114699 114719 . + 0 ID=Physo140897;Parent=Physo140897;rank=1 scaffold_91 . exon 114699 114719 . + . ID=Physo140897.1;Parent=Physo140897;constitutive=1;rank=1 scaffold_91 . CDS 114763 115218 . + 0 ID=Physo140897;Parent=Physo140897;rank=2 scaffold_91 . exon 114763 115218 . + . ID=Physo140897.2;Parent=Physo140897;constitutive=1;rank=2 scaffold_91 . CDS 115281 115682 . + 0 ID=Physo140897;Parent=Physo140897;rank=3 scaffold_91 . exon 115281 115682 . + . ID=Physo140897.3;Parent=Physo140897;constitutive=1;rank=3 scaffold_91 . CDS 115805 115888 . + 0 ID=Physo140897;Parent=Physo140897;rank=4 scaffold_91 . exon 115805 115888 . + . ID=Physo140897.4;Parent=Physo140897;constitutive=1;rank=4 scaffold_91 . CDS 115965 116071 . + 0 ID=Physo140897;Parent=Physo140897;rank=5 scaffold_91 . exon 115965 116071 . + . ID=Physo140897.5;Parent=Physo140897;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_91 . CDS 116272 117226 . + 0 ID=Physo140897;Parent=Physo140897;rank=6 scaffold_91 . exon 116272 117226 . + . ID=Physo140897.6;Parent=Physo140897;constitutive=1;ensembl_phase=2;rank=6 scaffold_91 . CDS 117565 117742 . + 0 ID=Physo140897;Parent=Physo140897;rank=7 scaffold_91 . exon 117565 117742 . + . ID=Physo140897.7;Parent=Physo140897;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_91 . CDS 117962 117971 . + 0 ID=Physo140897;Parent=Physo140897;rank=8 scaffold_91 . exon 117962 117971 . + . ID=Physo140897.8;Parent=Physo140897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_91 . CDS 118116 118817 . + 0 ID=Physo140897;Parent=Physo140897;rank=9 scaffold_91 . exon 118116 118817 . + . ID=Physo140897.9;Parent=Physo140897;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_91 . CDS 118859 119142 . + 0 ID=Physo140897;Parent=Physo140897;rank=10 scaffold_91 . exon 118859 119142 . + . ID=Physo140897.10;Parent=Physo140897;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_91 . CDS 119317 119692 . + 0 ID=Physo140897;Parent=Physo140897;rank=11 scaffold_91 . CDS 119736 119875 . + 0 ID=Physo140897;Parent=Physo140897;rank=12 scaffold_91 . CDS 119909 120552 . + 0 ID=Physo140897;Parent=Physo140897;rank=13 scaffold_91 . CDS 120726 120974 . + 0 ID=Physo140897;Parent=Physo140897;rank=14 scaffold_91 . repeat_region 120633 120682 . ? . description=dust scaffold_91 . repeat_region 122490 122504 . ? . description=dust scaffold_91 . repeat_region 123894 123906 . ? . description=dust scaffold_91 . repeat_region 124189 124197 . ? . description=dust scaffold_91 . biological_region 125548 125548 0.999 + . logic_name=eponine scaffold_91 . biological_region 125845 125847 0.999 + . logic_name=eponine scaffold_91 . biological_region 127450 127450 0.999 - . logic_name=eponine scaffold_91 . biological_region 127967 127968 0.999 - . logic_name=eponine scaffold_91 ensembl protein_coding_gene 121164 122057 . + . ID=Physo109329;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_910004;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 121164 122057 . + . ID=Physo109329;Parent=Physo109329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 121164 122057 . + 0 ID=Physo109329;Parent=Physo109329;rank=1 scaffold_91 . exon 121164 122057 . + . ID=Physo109329.1;Parent=Physo109329;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 125618 127804 . - . ID=Physo109330;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_910005;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 125618 127804 . - . ID=Physo109330;Parent=Physo109330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 125618 127135 . - 0 ID=Physo109330;Parent=Physo109330;rank=2 scaffold_91 . exon 125618 127135 . - . ID=Physo109330.3;Parent=Physo109330;constitutive=1;rank=3 scaffold_91 . CDS 127244 127336 . - 0 ID=Physo109330;Parent=Physo109330;rank=1 scaffold_91 . exon 127244 127417 . - . ID=Physo109330.2;Parent=Physo109330;constitutive=1;ensembl_phase=-1;rank=2 scaffold_91 . exon 127798 127804 . - . ID=Physo109330.1;Parent=Physo109330;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_91 ensembl protein_coding_gene 127714 130194 . + . ID=Physo121387;biotype=protein_coding;external_name=estExt_Genewise1.C_910044;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 127714 130194 . + . ID=Physo121387;Parent=Physo121387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 127714 127792 . + . ID=Physo121387.1;Parent=Physo121387;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_91 . CDS 127716 127792 . + 0 ID=Physo121387;Parent=Physo121387;rank=1 scaffold_91 . CDS 127864 128016 . + 0 ID=Physo121387;Parent=Physo121387;rank=2 scaffold_91 . exon 127864 128016 . + . ID=Physo121387.2;Parent=Physo121387;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_91 . CDS 128092 128185 . + 0 ID=Physo121387;Parent=Physo121387;rank=3 scaffold_91 . exon 128092 128259 . + . ID=Physo121387.3;Parent=Physo121387;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_91 . exon 128335 128384 . + . ID=Physo121387.4;Parent=Physo121387;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_91 . exon 119317 119692 . + . ID=Physo140897.11;Parent=Physo140897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_91 . exon 119736 119875 . + . ID=Physo140897.12;Parent=Physo140897;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_91 . exon 119909 120552 . + . ID=Physo140897.13;Parent=Physo140897;constitutive=1;ensembl_phase=1;rank=13 scaffold_91 . exon 120726 120974 . + . ID=Physo140897.14;Parent=Physo140897;constitutive=1;rank=14 scaffold_91 . repeat_region 132146 132170 . ? . description=trf scaffold_91 . repeat_region 136274 136308 . ? . description=trf scaffold_91 . exon 130123 130194 . + . ID=Physo121387.5;Parent=Physo121387;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_91 ensembl protein_coding_gene 131658 132200 . + . ID=Physo140901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910026;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 131658 132200 . + . ID=Physo140901;Parent=Physo140901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 131658 132200 . + 0 ID=Physo140901;Parent=Physo140901;rank=1 scaffold_91 . exon 131658 132200 . + . ID=Physo140901.1;Parent=Physo140901;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 132418 134058 . - . ID=Physo140902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910027;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 132418 134058 . - . ID=Physo140902;Parent=Physo140902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 132418 134058 . - 0 ID=Physo140902;Parent=Physo140902;rank=1 scaffold_91 . exon 132418 134058 . - . ID=Physo140902.1;Parent=Physo140902;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 134606 135229 . - . ID=Physo140903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910028;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 134606 135229 . - . ID=Physo140903;Parent=Physo140903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 134606 134653 . - 0 ID=Physo140903;Parent=Physo140903;rank=3 scaffold_91 . exon 134606 134653 . - . ID=Physo140903.3;Parent=Physo140903;constitutive=1;rank=3 scaffold_91 . CDS 134676 135171 . - 0 ID=Physo140903;Parent=Physo140903;rank=2 scaffold_91 . exon 134676 135171 . - . ID=Physo140903.2;Parent=Physo140903;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 . CDS 135207 135229 . - 0 ID=Physo140903;Parent=Physo140903;rank=1 scaffold_91 . exon 135207 135229 . - . ID=Physo140903.1;Parent=Physo140903;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 . repeat_region 139142 139149 . ? . description=dust scaffold_91 . biological_region 141240 141251 0.999 - . logic_name=eponine scaffold_91 . repeat_region 147206 147220 . ? . description=dust scaffold_91 . repeat_region 147946 147955 . ? . description=dust scaffold_91 ensembl protein_coding_gene 140179 142694 . - . ID=Physo140904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910029;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 140179 142694 . - . ID=Physo140904;Parent=Physo140904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 140179 141299 . - 0 ID=Physo140904;Parent=Physo140904;rank=2 scaffold_91 . exon 140179 141299 . - . ID=Physo140904.2;Parent=Physo140904;constitutive=1;ensembl_phase=1;rank=2 scaffold_91 . CDS 141899 142694 . - 0 ID=Physo140904;Parent=Physo140904;rank=1 scaffold_91 . exon 141899 142694 . - . ID=Physo140904.1;Parent=Physo140904;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 ensembl protein_coding_gene 143110 145698 . - . ID=Physo140905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910030;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 143110 145698 . - . ID=Physo140905;Parent=Physo140905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 143110 145698 . - 0 ID=Physo140905;Parent=Physo140905;rank=1 scaffold_91 . exon 143110 145698 . - . ID=Physo140905.1;Parent=Physo140905;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 158857 159096 . + . ID=Physo121388;biotype=protein_coding;external_name=estExt_Genewise1.C_910045;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 158857 159096 . + . ID=Physo121388;Parent=Physo121388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 158857 159096 . + 0 ID=Physo121388;Parent=Physo121388;rank=1 scaffold_91 . exon 158857 159096 . + . ID=Physo121388.1;Parent=Physo121388;constitutive=1;rank=1 scaffold_91 . repeat_region 162466 162597 . ? . description=trf scaffold_91 . repeat_region 166023 166052 . ? . description=dust scaffold_91 ensembl protein_coding_gene 161311 161623 . - . ID=Physo109331;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_910006;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 161311 161623 . - . ID=Physo109331;Parent=Physo109331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 161311 161326 . - 0 ID=Physo109331;Parent=Physo109331;rank=2 scaffold_91 . exon 161311 161326 . - . ID=Physo109331.2;Parent=Physo109331;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 . CDS 161346 161623 . - 0 ID=Physo109331;Parent=Physo109331;rank=1 scaffold_91 . exon 161346 161623 . - . ID=Physo109331.1;Parent=Physo109331;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 ensembl protein_coding_gene 164261 165212 . - . ID=Physo140908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910033;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 164261 165212 . - . ID=Physo140908;Parent=Physo140908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 164261 164690 . - 0 ID=Physo140908;Parent=Physo140908;rank=2 scaffold_91 . exon 164261 164690 . - . ID=Physo140908.2;Parent=Physo140908;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 . CDS 164752 165212 . - 0 ID=Physo140908;Parent=Physo140908;rank=1 scaffold_91 . exon 164752 165212 . - . ID=Physo140908.1;Parent=Physo140908;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 ensembl protein_coding_gene 165702 166429 . + . ID=Physo140909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910034;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 165702 166429 . + . ID=Physo140909;Parent=Physo140909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 165702 165734 . + 0 ID=Physo140909;Parent=Physo140909;rank=1 scaffold_91 . exon 165702 165734 . + . ID=Physo140909.1;Parent=Physo140909;constitutive=1;rank=1 scaffold_91 . CDS 165779 166429 . + 0 ID=Physo140909;Parent=Physo140909;rank=2 scaffold_91 . exon 165779 166429 . + . ID=Physo140909.2;Parent=Physo140909;constitutive=1;rank=2 scaffold_91 . repeat_region 169228 173811 . + . description=GypsyPi-1c_I-int scaffold_91 . biological_region 171732 171735 0.999 - . logic_name=eponine scaffold_91 . biological_region 172416 172419 0.999 + . logic_name=eponine scaffold_91 . biological_region 172465 172470 0.999 + . logic_name=eponine scaffold_91 . biological_region 173890 173890 0.999 - . logic_name=eponine scaffold_91 . biological_region 174249 174254 0.999 - . logic_name=eponine scaffold_91 . repeat_region 174391 174702 . + . description=GypsyPi-1c_I-int scaffold_91 . biological_region 174448 174448 0.999 - . logic_name=eponine scaffold_91 . repeat_region 174703 174997 . + . description=GypsyPi-1c_LTR scaffold_91 . biological_region 176446 176450 0.999 - . logic_name=eponine scaffold_91 . biological_region 176969 176971 0.999 - . logic_name=eponine scaffold_91 ensembl protein_coding_gene 169006 171644 . + . ID=Physo140910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910035;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 169006 171644 . + . ID=Physo140910;Parent=Physo140910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 169006 169079 . + 0 ID=Physo140910;Parent=Physo140910;rank=1 scaffold_91 . exon 169006 169079 . + . ID=Physo140910.1;Parent=Physo140910;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 . CDS 169157 170582 . + 0 ID=Physo140910;Parent=Physo140910;rank=2 scaffold_91 . exon 169157 170582 . + . ID=Physo140910.2;Parent=Physo140910;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 . CDS 170631 171644 . + 0 ID=Physo140910;Parent=Physo140910;rank=3 scaffold_91 . exon 170631 171644 . + . ID=Physo140910.3;Parent=Physo140910;constitutive=1;rank=3 scaffold_91 ensembl protein_coding_gene 172309 174516 . - . ID=Physo140911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910036;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 172309 174516 . - . ID=Physo140911;Parent=Physo140911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 172309 174516 . - 0 ID=Physo140911;Parent=Physo140911;rank=1 scaffold_91 . exon 172309 174516 . - . ID=Physo140911.1;Parent=Physo140911;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 176177 178064 . - . ID=Physo140912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910037;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 176177 178064 . - . ID=Physo140912;Parent=Physo140912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 176177 176218 . - 0 ID=Physo140912;Parent=Physo140912;rank=6 scaffold_91 . exon 176177 176218 . - . ID=Physo140912.6;Parent=Physo140912;constitutive=1;rank=6 scaffold_91 . CDS 176359 176818 . - 0 ID=Physo140912;Parent=Physo140912;rank=5 scaffold_91 . exon 176359 176818 . - . ID=Physo140912.5;Parent=Physo140912;constitutive=1;ensembl_phase=2;rank=5 scaffold_91 . CDS 176842 176957 . - 0 ID=Physo140912;Parent=Physo140912;rank=4 scaffold_91 . exon 176842 176957 . - . ID=Physo140912.4;Parent=Physo140912;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_91 . CDS 177050 177537 . - 0 ID=Physo140912;Parent=Physo140912;rank=3 scaffold_91 . exon 177050 177537 . - . ID=Physo140912.3;Parent=Physo140912;constitutive=1;ensembl_phase=1;rank=3 scaffold_91 . CDS 177610 177979 . - 0 ID=Physo140912;Parent=Physo140912;rank=2 scaffold_91 . exon 177610 177979 . - . ID=Physo140912.2;Parent=Physo140912;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_91 . CDS 178056 178064 . - 0 ID=Physo140912;Parent=Physo140912;rank=1 scaffold_91 . exon 178056 178064 . - . ID=Physo140912.1;Parent=Physo140912;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 181707 184968 . + . ID=Physo140913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910038;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 181707 184968 . + . ID=Physo140913;Parent=Physo140913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 181707 184244 . + 0 ID=Physo140913;Parent=Physo140913;rank=1 scaffold_91 . exon 181707 184244 . + . ID=Physo140913.1;Parent=Physo140913;constitutive=1;rank=1 scaffold_91 . CDS 184443 184921 . + 0 ID=Physo140913;Parent=Physo140913;rank=2 scaffold_91 . exon 184443 184921 . + . ID=Physo140913.2;Parent=Physo140913;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_91 . CDS 184962 184968 . + 0 ID=Physo140913;Parent=Physo140913;rank=3 scaffold_91 . exon 184962 184968 . + . ID=Physo140913.3;Parent=Physo140913;constitutive=1;ensembl_phase=2;rank=3 scaffold_91 ensembl protein_coding_gene 188447 189899 . + . ID=Physo140914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910039;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 188447 189899 . + . ID=Physo140914;Parent=Physo140914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 188447 189862 . + 0 ID=Physo140914;Parent=Physo140914;rank=1 scaffold_91 . exon 188447 189899 . + . ID=Physo140914.1;Parent=Physo140914;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_91 . repeat_region 188676 188715 . ? . description=trf scaffold_91 . repeat_region 192250 192314 . ? . description=trf scaffold_91 . repeat_region 192293 194293 . - . description=GypsyPi-1c_I-int scaffold_91 . repeat_region 192295 192463 . ? . description=trf scaffold_91 . biological_region 193772 193773 0.999 + . logic_name=eponine scaffold_91 . biological_region 193790 193792 0.999 - . logic_name=eponine scaffold_91 . biological_region 194049 194050 0.999 - . logic_name=eponine scaffold_91 . repeat_region 194294 194599 . - . description=GypsyPi-1c_LTR scaffold_91 . biological_region 197091 197093 0.999 - . logic_name=eponine scaffold_91 . repeat_region 197880 197891 . ? . description=dust scaffold_91 ensembl protein_coding_gene 192419 194206 . - . ID=Physo140915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910040;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 192419 194206 . - . ID=Physo140915;Parent=Physo140915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 192419 192493 . - 0 ID=Physo140915;Parent=Physo140915;rank=3 scaffold_91 . exon 192419 192493 . - . ID=Physo140915.3;Parent=Physo140915;constitutive=1;rank=3 scaffold_91 . CDS 192540 193129 . - 0 ID=Physo140915;Parent=Physo140915;rank=2 scaffold_91 . exon 192540 193129 . - . ID=Physo140915.2;Parent=Physo140915;constitutive=1;ensembl_phase=1;rank=2 scaffold_91 . CDS 193258 194206 . - 0 ID=Physo140915;Parent=Physo140915;rank=1 scaffold_91 . exon 193258 194206 . - . ID=Physo140915.1;Parent=Physo140915;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 ensembl protein_coding_gene 195189 197627 . - . ID=Physo140916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910041;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 195189 197627 . - . ID=Physo140916;Parent=Physo140916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 195189 197627 . - 0 ID=Physo140916;Parent=Physo140916;rank=1 scaffold_91 . exon 195189 197627 . - . ID=Physo140916.1;Parent=Physo140916;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 198048 198486 . + . ID=Physo140917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910042;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 198048 198486 . + . ID=Physo140917;Parent=Physo140917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 198048 198178 . + 0 ID=Physo140917;Parent=Physo140917;rank=1 scaffold_91 . exon 198048 198178 . + . ID=Physo140917.1;Parent=Physo140917;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 . CDS 198255 198486 . + 0 ID=Physo140917;Parent=Physo140917;rank=2 scaffold_91 . exon 198255 198486 . + . ID=Physo140917.2;Parent=Physo140917;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 ensembl protein_coding_gene 204013 204429 . - . ID=Physo109334;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_910009;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 204013 204429 . - . ID=Physo109334;Parent=Physo109334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 204013 204429 . - . ID=Physo109334.1;Parent=Physo109334;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_91 . CDS 204073 204351 . - 0 ID=Physo109334;Parent=Physo109334;rank=1 scaffold_91 ensembl protein_coding_gene 199831 200463 . - . ID=Physo121394;biotype=protein_coding;external_name=estExt_Genewise1.C_910051;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 199831 200463 . - . ID=Physo121394;Parent=Physo121394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 199831 200313 . - 0 ID=Physo121394;Parent=Physo121394;rank=1 scaffold_91 . exon 199831 200463 . - . ID=Physo121394.1;Parent=Physo121394;constitutive=1;ensembl_phase=-1;rank=1 scaffold_91 ensembl protein_coding_gene 202002 202761 . - . ID=Physo140919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910044;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 202002 202761 . - . ID=Physo140919;Parent=Physo140919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 202002 202310 . - 0 ID=Physo140919;Parent=Physo140919;rank=2 scaffold_91 . exon 202002 202310 . - . ID=Physo140919.2;Parent=Physo140919;constitutive=1;rank=2 scaffold_91 . CDS 202336 202761 . - 0 ID=Physo140919;Parent=Physo140919;rank=1 scaffold_91 . exon 202336 202761 . - . ID=Physo140919.1;Parent=Physo140919;constitutive=1;rank=1 scaffold_91 . repeat_region 210861 210936 . ? . description=trf scaffold_91 . repeat_region 211175 223177 . ? . description=dust scaffold_91 . biological_region 223384 223386 0.999 + . logic_name=eponine scaffold_91 . repeat_region 228193 228316 . + . description=Gypsy-2-I_PI-int scaffold_91 ensembl protein_coding_gene 223278 225226 . + . ID=Physo158222;biotype=protein_coding;external_name=C_scaffold_91000009;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 223278 225226 . + . ID=Physo158222;Parent=Physo158222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 223278 224361 . + 0 ID=Physo158222;Parent=Physo158222;rank=1 scaffold_91 . exon 223278 224361 . + . ID=Physo158222.1;Parent=Physo158222;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 . CDS 224485 224738 . + 0 ID=Physo158222;Parent=Physo158222;rank=2 scaffold_91 . exon 224485 224738 . + . ID=Physo158222.2;Parent=Physo158222;constitutive=1;ensembl_phase=1;rank=2 scaffold_91 . CDS 224895 225041 . + 0 ID=Physo158222;Parent=Physo158222;rank=3 scaffold_91 . exon 224895 225041 . + . ID=Physo158222.3;Parent=Physo158222;constitutive=1;rank=3 scaffold_91 . CDS 225197 225226 . + 0 ID=Physo158222;Parent=Physo158222;rank=4 scaffold_91 . exon 225197 225226 . + . ID=Physo158222.4;Parent=Physo158222;constitutive=1;rank=4 scaffold_91 . repeat_region 232107 232225 . ? . description=trf scaffold_91 . repeat_region 233029 233078 . ? . description=trf scaffold_91 . repeat_region 233682 233689 . ? . description=dust scaffold_91 . repeat_region 235036 235043 . ? . description=dust scaffold_91 . repeat_region 236542 236551 . ? . description=dust scaffold_91 . repeat_region 237687 237712 . ? . description=trf scaffold_91 ensembl protein_coding_gene 235112 235303 . - . ID=Physo121399;biotype=protein_coding;external_name=estExt_Genewise1.C_910056;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 235112 235303 . - . ID=Physo121399;Parent=Physo121399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 235112 235288 . - 0 ID=Physo121399;Parent=Physo121399;rank=1 scaffold_91 . exon 235112 235303 . - . ID=Physo121399.1;Parent=Physo121399;constitutive=1;ensembl_phase=-1;rank=1 scaffold_91 ensembl protein_coding_gene 230237 231266 . - . ID=Physo140922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910047;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 230237 231266 . - . ID=Physo140922;Parent=Physo140922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 230237 230296 . - 0 ID=Physo140922;Parent=Physo140922;rank=4 scaffold_91 . exon 230237 230296 . - . ID=Physo140922.4;Parent=Physo140922;constitutive=1;rank=4 scaffold_91 . CDS 230539 230634 . - 0 ID=Physo140922;Parent=Physo140922;rank=3 scaffold_91 . exon 230539 230634 . - . ID=Physo140922.3;Parent=Physo140922;constitutive=1;rank=3 scaffold_91 . CDS 230674 231129 . - 0 ID=Physo140922;Parent=Physo140922;rank=2 scaffold_91 . exon 230674 231129 . - . ID=Physo140922.2;Parent=Physo140922;constitutive=1;rank=2 scaffold_91 . CDS 231201 231266 . - 0 ID=Physo140922;Parent=Physo140922;rank=1 scaffold_91 . exon 231201 231266 . - . ID=Physo140922.1;Parent=Physo140922;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 235492 238819 . - . ID=Physo140923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910048;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 235492 238819 . - . ID=Physo140923;Parent=Physo140923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 235492 235748 . - 0 ID=Physo140923;Parent=Physo140923;rank=5 scaffold_91 . exon 235492 235748 . - . ID=Physo140923.5;Parent=Physo140923;constitutive=1;ensembl_phase=1;rank=5 scaffold_91 . CDS 235770 235887 . - 0 ID=Physo140923;Parent=Physo140923;rank=4 scaffold_91 . exon 235770 235887 . - . ID=Physo140923.4;Parent=Physo140923;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_91 . CDS 235957 236070 . - 0 ID=Physo140923;Parent=Physo140923;rank=3 scaffold_91 . exon 235957 236070 . - . ID=Physo140923.3;Parent=Physo140923;constitutive=1;rank=3 scaffold_91 . CDS 236128 236291 . - 0 ID=Physo140923;Parent=Physo140923;rank=2 scaffold_91 . exon 236128 236291 . - . ID=Physo140923.2;Parent=Physo140923;constitutive=1;ensembl_phase=1;rank=2 scaffold_91 . CDS 236668 238819 . - 0 ID=Physo140923;Parent=Physo140923;rank=1 scaffold_91 . exon 236668 238819 . - . ID=Physo140923.1;Parent=Physo140923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 . biological_region 243024 243024 0.999 + . logic_name=eponine scaffold_91 . biological_region 243088 243089 0.999 + . logic_name=eponine scaffold_91 . biological_region 243289 243293 0.999 - . logic_name=eponine scaffold_91 . biological_region 243819 243819 0.999 - . logic_name=eponine scaffold_91 . biological_region 244006 244008 0.999 + . logic_name=eponine scaffold_91 . biological_region 244183 244190 0.999 + . logic_name=eponine scaffold_91 . biological_region 244313 244314 0.999 - . logic_name=eponine scaffold_91 . biological_region 244581 244582 0.999 - . logic_name=eponine scaffold_91 . biological_region 245242 245246 0.999 - . logic_name=eponine scaffold_91 . biological_region 245395 245397 0.999 + . logic_name=eponine scaffold_91 . biological_region 245426 245428 0.999 - . logic_name=eponine scaffold_91 . biological_region 245433 245433 0.999 + . logic_name=eponine scaffold_91 . biological_region 245441 245446 0.999 + . logic_name=eponine scaffold_91 . biological_region 245444 245451 0.999 - . logic_name=eponine scaffold_91 . biological_region 245457 245459 0.999 - . logic_name=eponine scaffold_91 . biological_region 247901 247908 0.999 + . logic_name=eponine scaffold_91 . biological_region 248031 248032 0.999 - . logic_name=eponine scaffold_91 ensembl protein_coding_gene 239143 243040 . + . ID=Physo140924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910049;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 239143 243040 . + . ID=Physo140924;Parent=Physo140924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 239143 239820 . + 0 ID=Physo140924;Parent=Physo140924;rank=1 scaffold_91 . exon 239143 239820 . + . ID=Physo140924.1;Parent=Physo140924;constitutive=1;rank=1 scaffold_91 . CDS 239902 241689 . + 0 ID=Physo140924;Parent=Physo140924;rank=2 scaffold_91 . exon 239902 241689 . + . ID=Physo140924.2;Parent=Physo140924;constitutive=1;rank=2 scaffold_91 . CDS 241810 242258 . + 0 ID=Physo140924;Parent=Physo140924;rank=3 scaffold_91 . exon 241810 242258 . + . ID=Physo140924.3;Parent=Physo140924;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_91 . CDS 242321 242876 . + 0 ID=Physo140924;Parent=Physo140924;rank=4 scaffold_91 . exon 242321 242876 . + . ID=Physo140924.4;Parent=Physo140924;constitutive=1;ensembl_phase=2;rank=4 scaffold_91 . CDS 242936 243040 . + 0 ID=Physo140924;Parent=Physo140924;rank=5 scaffold_91 . exon 242936 243040 . + . ID=Physo140924.5;Parent=Physo140924;constitutive=1;rank=5 scaffold_91 ensembl protein_coding_gene 243436 245568 . - . ID=Physo140925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910050;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 243436 245568 . - . ID=Physo140925;Parent=Physo140925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 243436 245568 . - 0 ID=Physo140925;Parent=Physo140925;rank=1 scaffold_91 . exon 243436 245568 . - . ID=Physo140925.1;Parent=Physo140925;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 247306 249286 . - . ID=Physo140926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910051;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 247306 249286 . - . ID=Physo140926;Parent=Physo140926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 247306 247321 . - 0 ID=Physo140926;Parent=Physo140926;rank=2 scaffold_91 . exon 247306 247321 . - . ID=Physo140926.2;Parent=Physo140926;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 . CDS 247779 249286 . - 0 ID=Physo140926;Parent=Physo140926;rank=1 scaffold_91 . exon 247779 249286 . - . ID=Physo140926.1;Parent=Physo140926;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 . repeat_region 248522 248552 . ? . description=trf scaffold_91 . repeat_region 249569 249578 . ? . description=dust scaffold_91 . repeat_region 253220 255583 . - . description=GypsyPi-1c_I-int scaffold_91 ensembl protein_coding_gene 251200 252683 . + . ID=Physo140927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910052;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 251200 252683 . + . ID=Physo140927;Parent=Physo140927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 251200 251558 . + 0 ID=Physo140927;Parent=Physo140927;rank=1 scaffold_91 . exon 251200 251558 . + . ID=Physo140927.1;Parent=Physo140927;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 . CDS 251692 252169 . + 0 ID=Physo140927;Parent=Physo140927;rank=2 scaffold_91 . exon 251692 252169 . + . ID=Physo140927.2;Parent=Physo140927;constitutive=1;ensembl_phase=2;rank=2 scaffold_91 . CDS 252210 252279 . + 0 ID=Physo140927;Parent=Physo140927;rank=3 scaffold_91 . exon 252210 252279 . + . ID=Physo140927.3;Parent=Physo140927;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_91 . CDS 252391 252683 . + 0 ID=Physo140927;Parent=Physo140927;rank=4 scaffold_91 . exon 252391 252683 . + . ID=Physo140927.4;Parent=Physo140927;constitutive=1;ensembl_phase=1;rank=4 scaffold_91 ensembl protein_coding_gene 252936 256251 . - . ID=Physo140928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910053;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 252936 256251 . - . ID=Physo140928;Parent=Physo140928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 252936 253418 . - 0 ID=Physo140928;Parent=Physo140928;rank=5 scaffold_91 . exon 252936 253418 . - . ID=Physo140928.5;Parent=Physo140928;constitutive=1;rank=5 scaffold_91 . CDS 253636 253734 . - 0 ID=Physo140928;Parent=Physo140928;rank=4 scaffold_91 . exon 253636 253734 . - . ID=Physo140928.4;Parent=Physo140928;constitutive=1;rank=4 scaffold_91 . CDS 253804 254493 . - 0 ID=Physo140928;Parent=Physo140928;rank=3 scaffold_91 . exon 253804 254493 . - . ID=Physo140928.3;Parent=Physo140928;constitutive=1;rank=3 scaffold_91 . CDS 254586 254795 . - 0 ID=Physo140928;Parent=Physo140928;rank=2 scaffold_91 . exon 254586 254795 . - . ID=Physo140928.2;Parent=Physo140928;constitutive=1;rank=2 scaffold_91 . CDS 254827 256251 . - 0 ID=Physo140928;Parent=Physo140928;rank=1 scaffold_91 . exon 254827 256251 . - . ID=Physo140928.1;Parent=Physo140928;constitutive=1;rank=1 scaffold_91 . biological_region 261342 261346 0.999 + . logic_name=eponine scaffold_91 . biological_region 261363 261366 0.999 - . logic_name=eponine scaffold_91 . biological_region 261437 261437 0.999 - . logic_name=eponine scaffold_91 . biological_region 262570 262572 0.999 + . logic_name=eponine scaffold_91 . biological_region 262603 262606 0.999 + . logic_name=eponine scaffold_91 . biological_region 262757 262762 0.999 - . logic_name=eponine scaffold_91 . biological_region 262795 262799 0.999 + . logic_name=eponine scaffold_91 . biological_region 262834 262841 0.999 + . logic_name=eponine scaffold_91 . biological_region 263385 263385 0.999 + . logic_name=eponine scaffold_91 . biological_region 264051 264052 0.999 - . logic_name=eponine scaffold_91 . biological_region 266509 266512 0.999 + . logic_name=eponine scaffold_91 . biological_region 266575 266575 0.999 - . logic_name=eponine scaffold_91 ensembl protein_coding_gene 259692 259844 . + . ID=Physo121400;biotype=protein_coding;external_name=estExt_Genewise1.C_910057;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 259692 259844 . + . ID=Physo121400;Parent=Physo121400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 259692 259844 . + . ID=Physo121400.1;Parent=Physo121400;constitutive=1;ensembl_phase=-1;rank=1 scaffold_91 . CDS 259704 259844 . + 0 ID=Physo121400;Parent=Physo121400;rank=1 scaffold_91 ensembl protein_coding_gene 261077 261661 . + . ID=Physo140929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910054;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 261077 261661 . + . ID=Physo140929;Parent=Physo140929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 261077 261661 . + . ID=Physo140929.1;Parent=Physo140929;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_91 . CDS 261103 261537 . + 0 ID=Physo140929;Parent=Physo140929;rank=1 scaffold_91 ensembl protein_coding_gene 262469 267591 . + . ID=Physo140930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910055;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 262469 267591 . + . ID=Physo140930;Parent=Physo140930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 262469 262490 . + 0 ID=Physo140930;Parent=Physo140930;rank=1 scaffold_91 . exon 262469 262490 . + . ID=Physo140930.1;Parent=Physo140930;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 . CDS 262547 262938 . + 0 ID=Physo140930;Parent=Physo140930;rank=2 scaffold_91 . exon 262547 262938 . + . ID=Physo140930.2;Parent=Physo140930;constitutive=1;ensembl_phase=1;rank=2 scaffold_91 . CDS 262959 263414 . + 0 ID=Physo140930;Parent=Physo140930;rank=3 scaffold_91 . exon 262959 263414 . + . ID=Physo140930.3;Parent=Physo140930;constitutive=1;rank=3 scaffold_91 . CDS 263655 265186 . + 0 ID=Physo140930;Parent=Physo140930;rank=4 scaffold_91 . exon 263655 265186 . + . ID=Physo140930.4;Parent=Physo140930;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_91 . CDS 265520 266337 . + 0 ID=Physo140930;Parent=Physo140930;rank=5 scaffold_91 . exon 265520 266337 . + . ID=Physo140930.5;Parent=Physo140930;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_91 . CDS 266372 267591 . + 0 ID=Physo140930;Parent=Physo140930;rank=6 scaffold_91 . exon 266372 267591 . + . ID=Physo140930.6;Parent=Physo140930;constitutive=1;ensembl_phase=1;rank=6 scaffold_91 . repeat_region 267595 269654 . ? . description=trf scaffold_91 . repeat_region 269964 270097 . ? . description=trf scaffold_91 . repeat_region 271311 271320 . ? . description=dust scaffold_91 . repeat_region 273871 273883 . ? . description=dust scaffold_91 . repeat_region 274178 274223 . ? . description=trf scaffold_91 . repeat_region 275770 275778 . ? . description=dust scaffold_91 ensembl protein_coding_gene 277841 278614 . - . ID=Physo140931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910056;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 277841 278614 . - . ID=Physo140931;Parent=Physo140931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 277841 278614 . - 0 ID=Physo140931;Parent=Physo140931;rank=1 scaffold_91 . exon 277841 278614 . - . ID=Physo140931.1;Parent=Physo140931;constitutive=1;rank=1 scaffold_91 . biological_region 278212 278212 0.999 - . logic_name=eponine scaffold_91 . biological_region 278811 278813 0.999 + . logic_name=eponine scaffold_91 . biological_region 280289 280295 0.999 + . logic_name=eponine scaffold_91 . biological_region 280339 280340 0.999 + . logic_name=eponine scaffold_91 . biological_region 280373 280377 0.999 - . logic_name=eponine scaffold_91 . biological_region 280482 280482 0.999 - . logic_name=eponine scaffold_91 . biological_region 280514 280518 0.999 - . logic_name=eponine scaffold_91 . biological_region 280960 280963 0.999 + . logic_name=eponine scaffold_91 . repeat_region 281932 281975 . + . description=(CAGTA)n scaffold_91 ensembl protein_coding_gene 279863 281638 . - . ID=Physo140932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910057;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 279863 281638 . - . ID=Physo140932;Parent=Physo140932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . exon 279863 281363 . - . ID=Physo140932.2;Parent=Physo140932;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_91 . CDS 280027 281363 . - 0 ID=Physo140932;Parent=Physo140932;rank=2 scaffold_91 . CDS 281473 281638 . - 0 ID=Physo140932;Parent=Physo140932;rank=1 scaffold_91 . exon 281473 281638 . - . ID=Physo140932.1;Parent=Physo140932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_91 ensembl protein_coding_gene 286085 287701 . + . ID=Physo140933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910058;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 286085 287701 . + . ID=Physo140933;Parent=Physo140933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 286085 287701 . + 0 ID=Physo140933;Parent=Physo140933;rank=1 scaffold_91 . exon 286085 287701 . + . ID=Physo140933.1;Parent=Physo140933;constitutive=1;rank=1 scaffold_91 . repeat_region 289309 289327 . ? . description=dust scaffold_91 . repeat_region 294764 294817 . ? . description=dust scaffold_91 . repeat_region 297682 297715 . ? . description=trf scaffold_91 ensembl protein_coding_gene 290374 292801 . - . ID=Physo140934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910059;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 290374 292801 . - . ID=Physo140934;Parent=Physo140934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 290374 291543 . - 0 ID=Physo140934;Parent=Physo140934;rank=6 scaffold_91 . exon 290374 291543 . - . ID=Physo140934.6;Parent=Physo140934;constitutive=1;rank=6 scaffold_91 . CDS 291631 291747 . - 0 ID=Physo140934;Parent=Physo140934;rank=5 scaffold_91 . exon 291631 291747 . - . ID=Physo140934.5;Parent=Physo140934;constitutive=1;rank=5 scaffold_91 . CDS 291810 291908 . - 0 ID=Physo140934;Parent=Physo140934;rank=4 scaffold_91 . exon 291810 291908 . - . ID=Physo140934.4;Parent=Physo140934;constitutive=1;rank=4 scaffold_91 . CDS 291993 292368 . - 0 ID=Physo140934;Parent=Physo140934;rank=3 scaffold_91 . exon 291993 292368 . - . ID=Physo140934.3;Parent=Physo140934;constitutive=1;ensembl_phase=2;rank=3 scaffold_91 . CDS 292443 292562 . - 0 ID=Physo140934;Parent=Physo140934;rank=2 scaffold_91 . exon 292443 292562 . - . ID=Physo140934.2;Parent=Physo140934;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_91 . CDS 292641 292801 . - 0 ID=Physo140934;Parent=Physo140934;rank=1 scaffold_91 . exon 292641 292801 . - . ID=Physo140934.1;Parent=Physo140934;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_91 ensembl protein_coding_gene 293420 296764 . - . ID=Physo140935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910060;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 293420 296764 . - . ID=Physo140935;Parent=Physo140935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 293420 296764 . - 0 ID=Physo140935;Parent=Physo140935;rank=1 scaffold_91 . exon 293420 296764 . - . ID=Physo140935.1;Parent=Physo140935;constitutive=1;rank=1 scaffold_91 . biological_region 298716 298721 0.999 + . logic_name=eponine scaffold_91 . biological_region 299210 299213 0.999 + . logic_name=eponine scaffold_91 . biological_region 299341 299343 0.999 - . logic_name=eponine scaffold_91 . biological_region 299351 299353 0.999 - . logic_name=eponine scaffold_91 . biological_region 299378 299380 0.999 + . logic_name=eponine scaffold_91 . biological_region 299462 299469 0.999 - . logic_name=eponine scaffold_91 . biological_region 299477 299477 0.999 - . logic_name=eponine scaffold_91 . biological_region 299515 299523 0.999 + . logic_name=eponine scaffold_91 . biological_region 299575 299580 0.999 - . logic_name=eponine scaffold_91 . biological_region 299714 299717 0.999 - . logic_name=eponine scaffold_91 . biological_region 304123 304125 0.999 + . logic_name=eponine scaffold_91 . biological_region 305319 305320 0.999 + . logic_name=eponine scaffold_91 . biological_region 305345 305347 0.999 - . logic_name=eponine scaffold_91 . biological_region 305635 305635 0.999 + . logic_name=eponine scaffold_91 ensembl protein_coding_gene 298246 299764 . - . ID=Physo140936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910061;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 298246 299764 . - . ID=Physo140936;Parent=Physo140936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 298246 298287 . - 0 ID=Physo140936;Parent=Physo140936;rank=2 scaffold_91 . exon 298246 298287 . - . ID=Physo140936.2;Parent=Physo140936;constitutive=1;rank=2 scaffold_91 . CDS 298385 299764 . - 0 ID=Physo140936;Parent=Physo140936;rank=1 scaffold_91 . exon 298385 299764 . - . ID=Physo140936.1;Parent=Physo140936;constitutive=1;rank=1 scaffold_91 ensembl protein_coding_gene 300187 301863 . + . ID=Physo140937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_910062;logic_name=jgi_physo1_1 scaffold_91 ensembl transcript 300187 301863 . + . ID=Physo140937;Parent=Physo140937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_91 . CDS 300187 301863 . + 0 ID=Physo140937;Parent=Physo140937;rank=1 scaffold_91 . exon 300187 301863 . + . ID=Physo140937.1;Parent=Physo140937;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_99 1 310785 scaffold_99 . repeat_region 1112 1119 . ? . description=dust scaffold_99 . biological_region 4006 4009 0.999 - . logic_name=eponine scaffold_99 . repeat_region 9112 9133 . ? . description=dust scaffold_99 ensembl tRNA_gene 344 416 . + . ID=EPrPSOG00000000070;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_99 ensembl transcript 344 416 . + . ID=EPrPSOT00000000070;Parent=EPrPSOG00000000070;biotype=tRNA;logic_name=ncrna_eg scaffold_99 . exon 344 416 . + . ID=EPrPSOE00000000070;Parent=EPrPSOT00000000070;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 ensembl protein_coding_gene 7336 10155 . - . ID=Physo141456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990001;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 7336 10155 . - . ID=Physo141456;Parent=Physo141456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 7336 8482 . - 0 ID=Physo141456;Parent=Physo141456;rank=5 scaffold_99 . exon 7336 8482 . - . ID=Physo141456.5;Parent=Physo141456;constitutive=1;ensembl_phase=2;rank=5 scaffold_99 . CDS 8578 9131 . - 0 ID=Physo141456;Parent=Physo141456;rank=4 scaffold_99 . exon 8578 9131 . - . ID=Physo141456.4;Parent=Physo141456;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_99 . CDS 9245 9415 . - 0 ID=Physo141456;Parent=Physo141456;rank=3 scaffold_99 . exon 9245 9415 . - . ID=Physo141456.3;Parent=Physo141456;constitutive=1;rank=3 scaffold_99 . CDS 9472 9755 . - 0 ID=Physo141456;Parent=Physo141456;rank=2 scaffold_99 . exon 9472 9755 . - . ID=Physo141456.2;Parent=Physo141456;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 9900 10155 . - 0 ID=Physo141456;Parent=Physo141456;rank=1 scaffold_99 . repeat_region 12009 12033 . ? . description=trf scaffold_99 . exon 9900 10155 . - . ID=Physo141456.1;Parent=Physo141456;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 ensembl protein_coding_gene 11665 14320 . + . ID=Physo141457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990002;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 11665 14320 . + . ID=Physo141457;Parent=Physo141457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . exon 11665 11827 . + . ID=Physo141457.1;Parent=Physo141457;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_99 . CDS 11757 11827 . + 0 ID=Physo141457;Parent=Physo141457;rank=1 scaffold_99 . CDS 11924 11948 . + 0 ID=Physo141457;Parent=Physo141457;rank=2 scaffold_99 . exon 11924 11948 . + . ID=Physo141457.2;Parent=Physo141457;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 12087 12401 . + 0 ID=Physo141457;Parent=Physo141457;rank=3 scaffold_99 . exon 12087 12401 . + . ID=Physo141457.3;Parent=Physo141457;constitutive=1;rank=3 scaffold_99 . CDS 12515 14320 . + 0 ID=Physo141457;Parent=Physo141457;rank=4 scaffold_99 . exon 12515 14320 . + . ID=Physo141457.4;Parent=Physo141457;constitutive=1;rank=4 scaffold_99 ensembl protein_coding_gene 18567 20981 . + . ID=Physo141458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990003;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 18567 20981 . + . ID=Physo141458;Parent=Physo141458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 18567 19016 . + 0 ID=Physo141458;Parent=Physo141458;rank=1 scaffold_99 . exon 18567 19016 . + . ID=Physo141458.1;Parent=Physo141458;constitutive=1;rank=1 scaffold_99 . CDS 19098 20885 . + 0 ID=Physo141458;Parent=Physo141458;rank=2 scaffold_99 . exon 19098 20981 . + . ID=Physo141458.2;Parent=Physo141458;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_99 . biological_region 19860 19861 0.999 + . logic_name=eponine scaffold_99 . biological_region 22247 22249 0.999 - . logic_name=eponine scaffold_99 . biological_region 22502 22510 0.999 - . logic_name=eponine scaffold_99 . biological_region 23094 23096 0.999 + . logic_name=eponine scaffold_99 . biological_region 23161 23162 0.999 + . logic_name=eponine scaffold_99 . biological_region 23205 23208 0.999 - . logic_name=eponine scaffold_99 . repeat_region 27107 27114 . ? . description=dust scaffold_99 . biological_region 27312 27315 0.999 + . logic_name=eponine scaffold_99 ensembl protein_coding_gene 21040 23272 . - . ID=Physo141459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990004;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 21040 23272 . - . ID=Physo141459;Parent=Physo141459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 21040 21533 . - 0 ID=Physo141459;Parent=Physo141459;rank=3 scaffold_99 . exon 21040 21533 . - . ID=Physo141459.3;Parent=Physo141459;constitutive=1;ensembl_phase=1;rank=3 scaffold_99 . CDS 21614 21742 . - 0 ID=Physo141459;Parent=Physo141459;rank=2 scaffold_99 . exon 21614 21742 . - . ID=Physo141459.2;Parent=Physo141459;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 21811 23272 . - 0 ID=Physo141459;Parent=Physo141459;rank=1 scaffold_99 . exon 21811 23272 . - . ID=Physo141459.1;Parent=Physo141459;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 ensembl protein_coding_gene 23555 25712 . + . ID=Physo141460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990005;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 23555 25712 . + . ID=Physo141460;Parent=Physo141460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 23555 24545 . + 0 ID=Physo141460;Parent=Physo141460;rank=1 scaffold_99 . exon 23555 24545 . + . ID=Physo141460.1;Parent=Physo141460;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 24618 24847 . + 0 ID=Physo141460;Parent=Physo141460;rank=2 scaffold_99 . exon 24618 24847 . + . ID=Physo141460.2;Parent=Physo141460;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 24918 25079 . + 0 ID=Physo141460;Parent=Physo141460;rank=3 scaffold_99 . exon 24918 25079 . + . ID=Physo141460.3;Parent=Physo141460;constitutive=1;rank=3 scaffold_99 . CDS 25151 25523 . + 0 ID=Physo141460;Parent=Physo141460;rank=4 scaffold_99 . exon 25151 25523 . + . ID=Physo141460.4;Parent=Physo141460;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_99 . CDS 25591 25712 . + 0 ID=Physo141460;Parent=Physo141460;rank=5 scaffold_99 . exon 25591 25712 . + . ID=Physo141460.5;Parent=Physo141460;constitutive=1;ensembl_phase=1;rank=5 scaffold_99 ensembl protein_coding_gene 25760 27001 . - . ID=Physo141461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990006;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 25760 27001 . - . ID=Physo141461;Parent=Physo141461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 25760 27001 . - 0 ID=Physo141461;Parent=Physo141461;rank=1 scaffold_99 . exon 25760 27001 . - . ID=Physo141461.1;Parent=Physo141461;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 27409 29241 . + . ID=Physo141462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990007;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 27409 29241 . + . ID=Physo141462;Parent=Physo141462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 27409 29241 . + 0 ID=Physo141462;Parent=Physo141462;rank=1 scaffold_99 . exon 27409 29241 . + . ID=Physo141462.1;Parent=Physo141462;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 29856 33584 . - . ID=Physo141463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990008;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 29856 33584 . - . ID=Physo141463;Parent=Physo141463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 29856 33584 . - 0 ID=Physo141463;Parent=Physo141463;rank=1 scaffold_99 . exon 29856 33584 . - . ID=Physo141463.1;Parent=Physo141463;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 33976 38750 . + . ID=Physo158350;biotype=protein_coding;external_name=C_scaffold_99000002;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 33976 38750 . + . ID=Physo158350;Parent=Physo158350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 33976 34050 . + 0 ID=Physo158350;Parent=Physo158350;rank=1 scaffold_99 . exon 33976 34050 . + . ID=Physo158350.1;Parent=Physo158350;constitutive=1;rank=1 scaffold_99 . CDS 34133 34227 . + 0 ID=Physo158350;Parent=Physo158350;rank=2 scaffold_99 . exon 34133 34227 . + . ID=Physo158350.2;Parent=Physo158350;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_99 . CDS 34326 34407 . + 0 ID=Physo158350;Parent=Physo158350;rank=3 scaffold_99 . exon 34326 34407 . + . ID=Physo158350.3;Parent=Physo158350;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 34478 35009 . + 0 ID=Physo158350;Parent=Physo158350;rank=4 scaffold_99 . exon 34478 35009 . + . ID=Physo158350.4;Parent=Physo158350;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_99 . CDS 35187 35675 . + 0 ID=Physo158350;Parent=Physo158350;rank=5 scaffold_99 . exon 35187 35675 . + . ID=Physo158350.5;Parent=Physo158350;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_99 . CDS 36075 36182 . + 0 ID=Physo158350;Parent=Physo158350;rank=6 scaffold_99 . exon 36075 36182 . + . ID=Physo158350.6;Parent=Physo158350;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_99 . CDS 36285 36460 . + 0 ID=Physo158350;Parent=Physo158350;rank=7 scaffold_99 . exon 36285 36460 . + . ID=Physo158350.7;Parent=Physo158350;constitutive=1;ensembl_phase=1;rank=7 scaffold_99 . CDS 36542 36622 . + 0 ID=Physo158350;Parent=Physo158350;rank=8 scaffold_99 . exon 36542 36622 . + . ID=Physo158350.8;Parent=Physo158350;constitutive=1;rank=8 scaffold_99 . CDS 36792 37111 . + 0 ID=Physo158350;Parent=Physo158350;rank=9 scaffold_99 . exon 36792 37111 . + . ID=Physo158350.9;Parent=Physo158350;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_99 . CDS 37238 37538 . + 0 ID=Physo158350;Parent=Physo158350;rank=10 scaffold_99 . exon 37238 37538 . + . ID=Physo158350.10;Parent=Physo158350;constitutive=1;ensembl_phase=2;rank=10 scaffold_99 . CDS 37680 37921 . + 0 ID=Physo158350;Parent=Physo158350;rank=11 scaffold_99 . exon 37680 37921 . + . ID=Physo158350.11;Parent=Physo158350;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_99 . CDS 37990 38097 . + 0 ID=Physo158350;Parent=Physo158350;rank=12 scaffold_99 . exon 37990 38097 . + . ID=Physo158350.12;Parent=Physo158350;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_99 . CDS 38747 38750 . + 0 ID=Physo158350;Parent=Physo158350;rank=13 scaffold_99 . exon 38747 38750 . + . ID=Physo158350.13;Parent=Physo158350;constitutive=1;ensembl_phase=2;rank=13 scaffold_99 . biological_region 40699 40701 0.999 + . logic_name=eponine scaffold_99 . repeat_region 43807 43814 . ? . description=dust scaffold_99 . repeat_region 45648 45655 . ? . description=dust scaffold_99 . repeat_region 45978 45991 . ? . description=dust scaffold_99 . repeat_region 47951 48000 . ? . description=dust scaffold_99 . biological_region 48334 48336 0.999 - . logic_name=eponine scaffold_99 . biological_region 48390 48391 0.999 + . logic_name=eponine scaffold_99 ensembl protein_coding_gene 40448 41459 . + . ID=Physo141465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990010;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 40448 41459 . + . ID=Physo141465;Parent=Physo141465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . exon 40448 41459 . + . ID=Physo141465.1;Parent=Physo141465;constitutive=1;ensembl_phase=-1;rank=1 scaffold_99 . CDS 40470 41459 . + 0 ID=Physo141465;Parent=Physo141465;rank=1 scaffold_99 ensembl protein_coding_gene 48000 49882 . + . ID=Physo141466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990011;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 48000 49882 . + . ID=Physo141466;Parent=Physo141466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 48000 48605 . + 0 ID=Physo141466;Parent=Physo141466;rank=1 scaffold_99 . exon 48000 48605 . + . ID=Physo141466.1;Parent=Physo141466;constitutive=1;rank=1 scaffold_99 . CDS 48643 49266 . + 0 ID=Physo141466;Parent=Physo141466;rank=2 scaffold_99 . CDS 49397 49882 . + 0 ID=Physo141466;Parent=Physo141466;rank=3 scaffold_99 . repeat_region 49750 49815 . ? . description=trf scaffold_99 . exon 48643 49266 . + . ID=Physo141466.2;Parent=Physo141466;constitutive=1;rank=2 scaffold_99 . exon 49397 49882 . + . ID=Physo141466.3;Parent=Physo141466;constitutive=1;rank=3 scaffold_99 . biological_region 59674 59675 0.999 - . logic_name=eponine scaffold_99 . biological_region 65609 65609 0.999 - . logic_name=eponine scaffold_99 . biological_region 66492 66492 0.999 - . logic_name=eponine scaffold_99 . biological_region 67589 67590 0.999 + . logic_name=eponine scaffold_99 ensembl protein_coding_gene 65377 66696 . + . ID=Physo141467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990012;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 65377 66696 . + . ID=Physo141467;Parent=Physo141467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 65377 65659 . + 0 ID=Physo141467;Parent=Physo141467;rank=1 scaffold_99 . exon 65377 65659 . + . ID=Physo141467.1;Parent=Physo141467;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 65741 66696 . + 0 ID=Physo141467;Parent=Physo141467;rank=2 scaffold_99 . exon 65741 66696 . + . ID=Physo141467.2;Parent=Physo141467;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 ensembl protein_coding_gene 67790 77766 . + . ID=Physo141468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990013;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 67790 77766 . + . ID=Physo141468;Parent=Physo141468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 67790 67959 . + 0 ID=Physo141468;Parent=Physo141468;rank=1 scaffold_99 . exon 67790 67959 . + . ID=Physo141468.1;Parent=Physo141468;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . CDS 67990 68162 . + 0 ID=Physo141468;Parent=Physo141468;rank=2 scaffold_99 . exon 67990 68162 . + . ID=Physo141468.2;Parent=Physo141468;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 68188 68586 . + 0 ID=Physo141468;Parent=Physo141468;rank=3 scaffold_99 . CDS 68817 69702 . + 0 ID=Physo141468;Parent=Physo141468;rank=4 scaffold_99 . CDS 69758 70020 . + 0 ID=Physo141468;Parent=Physo141468;rank=5 scaffold_99 . CDS 70842 71571 . + 0 ID=Physo141468;Parent=Physo141468;rank=6 scaffold_99 . CDS 71704 72991 . + 0 ID=Physo141468;Parent=Physo141468;rank=7 scaffold_99 . CDS 73025 75526 . + 0 ID=Physo141468;Parent=Physo141468;rank=8 scaffold_99 . CDS 76015 76648 . + 0 ID=Physo141468;Parent=Physo141468;rank=9 scaffold_99 . CDS 76721 76789 . + 0 ID=Physo141468;Parent=Physo141468;rank=10 scaffold_99 . CDS 77380 77594 . + 0 ID=Physo141468;Parent=Physo141468;rank=11 scaffold_99 . CDS 77635 77766 . + 0 ID=Physo141468;Parent=Physo141468;rank=12 scaffold_99 . repeat_region 68935 68988 . ? . description=trf scaffold_99 . repeat_region 68938 68998 . ? . description=trf scaffold_99 . repeat_region 68938 68998 . ? . description=trf scaffold_99 . exon 68188 68586 . + . ID=Physo141468.3;Parent=Physo141468;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_99 . exon 68817 69702 . + . ID=Physo141468.4;Parent=Physo141468;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_99 . exon 69758 70020 . + . ID=Physo141468.5;Parent=Physo141468;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_99 . exon 70842 71571 . + . ID=Physo141468.6;Parent=Physo141468;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_99 . exon 71704 72991 . + . ID=Physo141468.7;Parent=Physo141468;constitutive=1;ensembl_phase=2;rank=7 scaffold_99 . exon 73025 75526 . + . ID=Physo141468.8;Parent=Physo141468;constitutive=1;rank=8 scaffold_99 . exon 76015 76648 . + . ID=Physo141468.9;Parent=Physo141468;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_99 . exon 76721 76789 . + . ID=Physo141468.10;Parent=Physo141468;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_99 . exon 77380 77594 . + . ID=Physo141468.11;Parent=Physo141468;constitutive=1;ensembl_phase=1;rank=11 scaffold_99 . exon 77635 77766 . + . ID=Physo141468.12;Parent=Physo141468;constitutive=1;rank=12 scaffold_99 . biological_region 78224 78227 0.999 + . logic_name=eponine scaffold_99 . biological_region 78252 78253 0.999 - . logic_name=eponine scaffold_99 . biological_region 78288 78292 0.999 - . logic_name=eponine scaffold_99 . biological_region 78440 78442 0.999 + . logic_name=eponine scaffold_99 . repeat_region 78787 81150 . + . description=GypsyPi-1c_I-int scaffold_99 . biological_region 79279 79279 0.999 - . logic_name=eponine scaffold_99 . biological_region 80572 80574 0.999 + . logic_name=eponine scaffold_99 . repeat_region 81273 81298 . ? . description=dust scaffold_99 . repeat_region 81429 81709 . + . description=GypsyPi-1c_I-int scaffold_99 . biological_region 81783 81785 0.999 - . logic_name=eponine scaffold_99 . biological_region 82201 82203 0.999 - . logic_name=eponine scaffold_99 . biological_region 82258 82262 0.999 + . logic_name=eponine scaffold_99 . biological_region 82332 82336 0.999 - . logic_name=eponine scaffold_99 . biological_region 82353 82357 0.999 - . logic_name=eponine scaffold_99 . biological_region 86565 86567 0.999 + . logic_name=eponine scaffold_99 . biological_region 86614 86616 0.999 - . logic_name=eponine scaffold_99 ensembl protein_coding_gene 67790 77766 . + . ID=Physo141468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990013;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 67790 77766 . + . ID=Physo141468;Parent=Physo141468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 67790 67959 . + 0 ID=Physo141468;Parent=Physo141468;rank=1 scaffold_99 . CDS 67990 68162 . + 0 ID=Physo141468;Parent=Physo141468;rank=2 scaffold_99 . CDS 68188 68586 . + 0 ID=Physo141468;Parent=Physo141468;rank=3 scaffold_99 . CDS 68817 69702 . + 0 ID=Physo141468;Parent=Physo141468;rank=4 scaffold_99 . CDS 69758 70020 . + 0 ID=Physo141468;Parent=Physo141468;rank=5 scaffold_99 . CDS 70842 71571 . + 0 ID=Physo141468;Parent=Physo141468;rank=6 scaffold_99 . CDS 71704 72991 . + 0 ID=Physo141468;Parent=Physo141468;rank=7 scaffold_99 . CDS 73025 75526 . + 0 ID=Physo141468;Parent=Physo141468;rank=8 scaffold_99 . CDS 76015 76648 . + 0 ID=Physo141468;Parent=Physo141468;rank=9 scaffold_99 . CDS 76721 76789 . + 0 ID=Physo141468;Parent=Physo141468;rank=10 scaffold_99 . CDS 77380 77594 . + 0 ID=Physo141468;Parent=Physo141468;rank=11 scaffold_99 . CDS 77635 77766 . + 0 ID=Physo141468;Parent=Physo141468;rank=12 scaffold_99 ensembl protein_coding_gene 78416 80382 . + . ID=Physo141469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990014;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 78416 80382 . + . ID=Physo141469;Parent=Physo141469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 78416 79477 . + 0 ID=Physo141469;Parent=Physo141469;rank=1 scaffold_99 . exon 78416 79477 . + . ID=Physo141469.1;Parent=Physo141469;constitutive=1;rank=1 scaffold_99 . CDS 79543 79914 . + 0 ID=Physo141469;Parent=Physo141469;rank=2 scaffold_99 . exon 79543 79914 . + . ID=Physo141469.2;Parent=Physo141469;constitutive=1;rank=2 scaffold_99 . CDS 80035 80382 . + 0 ID=Physo141469;Parent=Physo141469;rank=3 scaffold_99 . exon 80035 80382 . + . ID=Physo141469.3;Parent=Physo141469;constitutive=1;rank=3 scaffold_99 ensembl protein_coding_gene 80659 81471 . + . ID=Physo141470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990015;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 80659 81471 . + . ID=Physo141470;Parent=Physo141470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 80659 80760 . + 0 ID=Physo141470;Parent=Physo141470;rank=1 scaffold_99 . exon 80659 80760 . + . ID=Physo141470.1;Parent=Physo141470;constitutive=1;rank=1 scaffold_99 . CDS 80928 81424 . + 0 ID=Physo141470;Parent=Physo141470;rank=2 scaffold_99 . exon 80928 81424 . + . ID=Physo141470.2;Parent=Physo141470;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_99 . CDS 81465 81471 . + 0 ID=Physo141470;Parent=Physo141470;rank=3 scaffold_99 . exon 81465 81471 . + . ID=Physo141470.3;Parent=Physo141470;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 ensembl protein_coding_gene 83643 86838 . - . ID=Physo141471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990016;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 83643 86838 . - . ID=Physo141471;Parent=Physo141471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 83643 84151 . - 0 ID=Physo141471;Parent=Physo141471;rank=6 scaffold_99 . exon 83643 84151 . - . ID=Physo141471.6;Parent=Physo141471;constitutive=1;ensembl_phase=1;rank=6 scaffold_99 . CDS 84210 84681 . - 0 ID=Physo141471;Parent=Physo141471;rank=5 scaffold_99 . exon 84210 84681 . - . ID=Physo141471.5;Parent=Physo141471;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_99 . CDS 84724 85470 . - 0 ID=Physo141471;Parent=Physo141471;rank=4 scaffold_99 . exon 84724 85470 . - . ID=Physo141471.4;Parent=Physo141471;constitutive=1;rank=4 scaffold_99 . CDS 85571 85745 . - 0 ID=Physo141471;Parent=Physo141471;rank=3 scaffold_99 . exon 85571 85745 . - . ID=Physo141471.3;Parent=Physo141471;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 85800 86350 . - 0 ID=Physo141471;Parent=Physo141471;rank=2 scaffold_99 . exon 85800 86350 . - . ID=Physo141471.2;Parent=Physo141471;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_99 . CDS 86452 86838 . - 0 ID=Physo141471;Parent=Physo141471;rank=1 scaffold_99 . exon 86452 86838 . - . ID=Physo141471.1;Parent=Physo141471;constitutive=1;rank=1 scaffold_99 . repeat_region 93308 93343 . ? . description=trf scaffold_99 . repeat_region 96417 96441 . ? . description=trf scaffold_99 ensembl protein_coding_gene 94541 96942 . - . ID=Physo141472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990017;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 94541 96942 . - . ID=Physo141472;Parent=Physo141472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 94541 94636 . - 0 ID=Physo141472;Parent=Physo141472;rank=7 scaffold_99 . exon 94541 94636 . - . ID=Physo141472.7;Parent=Physo141472;constitutive=1;rank=7 scaffold_99 . CDS 94845 95178 . - 0 ID=Physo141472;Parent=Physo141472;rank=6 scaffold_99 . exon 94845 95178 . - . ID=Physo141472.6;Parent=Physo141472;constitutive=1;ensembl_phase=2;rank=6 scaffold_99 . CDS 95632 95859 . - 0 ID=Physo141472;Parent=Physo141472;rank=5 scaffold_99 . exon 95632 95859 . - . ID=Physo141472.5;Parent=Physo141472;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_99 . CDS 95888 96092 . - 0 ID=Physo141472;Parent=Physo141472;rank=4 scaffold_99 . exon 95888 96092 . - . ID=Physo141472.4;Parent=Physo141472;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_99 . CDS 96157 96241 . - 0 ID=Physo141472;Parent=Physo141472;rank=3 scaffold_99 . exon 96157 96241 . - . ID=Physo141472.3;Parent=Physo141472;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_99 . CDS 96562 96839 . - 0 ID=Physo141472;Parent=Physo141472;rank=2 scaffold_99 . exon 96562 96839 . - . ID=Physo141472.2;Parent=Physo141472;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 96921 96942 . - 0 ID=Physo141472;Parent=Physo141472;rank=1 scaffold_99 . exon 96921 96942 . - . ID=Physo141472.1;Parent=Physo141472;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . repeat_region 98367 98416 . ? . description=dust scaffold_99 . biological_region 98542 98543 0.999 - . logic_name=eponine scaffold_99 . repeat_region 98633 98646 . ? . description=dust scaffold_99 . repeat_region 103260 103565 . - . description=GypsyPi-1c_LTR scaffold_99 . repeat_region 105014 105091 . - . description=GypsyPi-1c_I-int scaffold_99 . repeat_region 105954 106128 . - . description=GypsyPi-1c_I-int scaffold_99 . repeat_region 106100 108242 . - . description=GypsyPi-1c_I-int scaffold_99 ensembl protein_coding_gene 97216 97901 . + . ID=Physo141473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990018;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 97216 97901 . + . ID=Physo141473;Parent=Physo141473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 97216 97255 . + 0 ID=Physo141473;Parent=Physo141473;rank=1 scaffold_99 . exon 97216 97255 . + . ID=Physo141473.1;Parent=Physo141473;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 97320 97473 . + 0 ID=Physo141473;Parent=Physo141473;rank=2 scaffold_99 . exon 97320 97473 . + . ID=Physo141473.2;Parent=Physo141473;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_99 . CDS 97502 97700 . + 0 ID=Physo141473;Parent=Physo141473;rank=3 scaffold_99 . exon 97502 97700 . + . ID=Physo141473.3;Parent=Physo141473;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 97815 97901 . + 0 ID=Physo141473;Parent=Physo141473;rank=4 scaffold_99 . exon 97815 97901 . + . ID=Physo141473.4;Parent=Physo141473;constitutive=1;rank=4 scaffold_99 ensembl protein_coding_gene 98435 99479 . + . ID=Physo141474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990019;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 98435 99479 . + . ID=Physo141474;Parent=Physo141474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 98435 98565 . + 0 ID=Physo141474;Parent=Physo141474;rank=1 scaffold_99 . exon 98435 98565 . + . ID=Physo141474.1;Parent=Physo141474;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . CDS 98830 99051 . + 0 ID=Physo141474;Parent=Physo141474;rank=2 scaffold_99 . exon 98830 99051 . + . ID=Physo141474.2;Parent=Physo141474;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_99 . CDS 99080 99278 . + 0 ID=Physo141474;Parent=Physo141474;rank=3 scaffold_99 . exon 99080 99278 . + . ID=Physo141474.3;Parent=Physo141474;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 99393 99479 . + 0 ID=Physo141474;Parent=Physo141474;rank=4 scaffold_99 . exon 99393 99479 . + . ID=Physo141474.4;Parent=Physo141474;constitutive=1;rank=4 scaffold_99 . repeat_region 109371 109394 . ? . description=trf scaffold_99 . repeat_region 111630 111732 . ? . description=trf scaffold_99 . repeat_region 111886 111931 . ? . description=trf scaffold_99 . repeat_region 111894 111942 . ? . description=trf scaffold_99 . repeat_region 115692 115727 . ? . description=trf scaffold_99 ensembl protein_coding_gene 107190 108155 . - . ID=Physo141475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990020;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 107190 108155 . - . ID=Physo141475;Parent=Physo141475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 107190 107635 . - 0 ID=Physo141475;Parent=Physo141475;rank=2 scaffold_99 . exon 107190 107635 . - . ID=Physo141475.2;Parent=Physo141475;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 107891 108155 . - 0 ID=Physo141475;Parent=Physo141475;rank=1 scaffold_99 . exon 107891 108155 . - . ID=Physo141475.1;Parent=Physo141475;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . repeat_region 116983 116990 . ? . description=dust scaffold_99 . biological_region 118278 118281 0.999 + . logic_name=eponine scaffold_99 . repeat_region 120237 120281 . ? . description=dust scaffold_99 . repeat_region 120400 120408 . ? . description=dust scaffold_99 . biological_region 122198 122198 0.999 + . logic_name=eponine scaffold_99 . repeat_region 123514 123577 . ? . description=dust scaffold_99 . biological_region 124446 124447 0.999 + . logic_name=eponine scaffold_99 ensembl protein_coding_gene 119742 120610 . - . ID=Physo141476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990021;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 119742 120610 . - . ID=Physo141476;Parent=Physo141476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 119742 119750 . - 0 ID=Physo141476;Parent=Physo141476;rank=4 scaffold_99 . exon 119742 119750 . - . ID=Physo141476.4;Parent=Physo141476;constitutive=1;rank=4 scaffold_99 . CDS 119803 119897 . - 0 ID=Physo141476;Parent=Physo141476;rank=3 scaffold_99 . exon 119803 119897 . - . ID=Physo141476.3;Parent=Physo141476;constitutive=1;ensembl_phase=1;rank=3 scaffold_99 . CDS 120125 120465 . - 0 ID=Physo141476;Parent=Physo141476;rank=2 scaffold_99 . exon 120125 120465 . - . ID=Physo141476.2;Parent=Physo141476;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 120540 120610 . - 0 ID=Physo141476;Parent=Physo141476;rank=1 scaffold_99 . exon 120540 120610 . - . ID=Physo141476.1;Parent=Physo141476;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 ensembl protein_coding_gene 124131 124796 . + . ID=Physo141477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990022;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 124131 124796 . + . ID=Physo141477;Parent=Physo141477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . exon 124131 124221 . + . ID=Physo141477.1;Parent=Physo141477;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_99 . CDS 124160 124221 . + 0 ID=Physo141477;Parent=Physo141477;rank=1 scaffold_99 . CDS 124322 124556 . + 0 ID=Physo141477;Parent=Physo141477;rank=2 scaffold_99 . exon 124322 124556 . + . ID=Physo141477.2;Parent=Physo141477;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 124626 124796 . + 0 ID=Physo141477;Parent=Physo141477;rank=3 scaffold_99 . exon 124626 124796 . + . ID=Physo141477.3;Parent=Physo141477;constitutive=1;rank=3 scaffold_99 . repeat_region 126850 126870 . ? . description=trf scaffold_99 . repeat_region 127012 127058 . ? . description=trf scaffold_99 ensembl protein_coding_gene 127171 127734 . + . ID=Physo109397;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_990001;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 127171 127734 . + . ID=Physo109397;Parent=Physo109397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 127171 127734 . + 0 ID=Physo109397;Parent=Physo109397;rank=1 scaffold_99 . exon 127171 127734 . + . ID=Physo109397.1;Parent=Physo109397;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 126580 127066 . + . ID=Physo141478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990023;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 126580 127066 . + . ID=Physo141478;Parent=Physo141478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 126580 127065 . + 0 ID=Physo141478;Parent=Physo141478;rank=1 scaffold_99 . exon 126580 127066 . + . ID=Physo141478.1;Parent=Physo141478;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_99 ensembl protein_coding_gene 128027 130270 . + . ID=Physo141480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990025;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 128027 130270 . + . ID=Physo141480;Parent=Physo141480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 128027 130270 . + 0 ID=Physo141480;Parent=Physo141480;rank=1 scaffold_99 . exon 128027 130270 . + . ID=Physo141480.1;Parent=Physo141480;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 134821 137958 . - . ID=Physo141482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990027;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 134821 137958 . - . ID=Physo141482;Parent=Physo141482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 134821 137958 . - 0 ID=Physo141482;Parent=Physo141482;rank=1 scaffold_99 . exon 134821 137958 . - . ID=Physo141482.1;Parent=Physo141482;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 130459 132208 . + . ID=Physo158354;biotype=protein_coding;external_name=C_scaffold_99000006;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 130459 132208 . + . ID=Physo158354;Parent=Physo158354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 130459 130950 . + 0 ID=Physo158354;Parent=Physo158354;rank=1 scaffold_99 . exon 130459 130950 . + . ID=Physo158354.1;Parent=Physo158354;constitutive=1;rank=1 scaffold_99 . CDS 131031 131141 . + 0 ID=Physo158354;Parent=Physo158354;rank=2 scaffold_99 . exon 131031 131141 . + . ID=Physo158354.2;Parent=Physo158354;constitutive=1;rank=2 scaffold_99 . CDS 131380 131433 . + 0 ID=Physo158354;Parent=Physo158354;rank=3 scaffold_99 . exon 131380 131433 . + . ID=Physo158354.3;Parent=Physo158354;constitutive=1;rank=3 scaffold_99 . CDS 131511 131540 . + 0 ID=Physo158354;Parent=Physo158354;rank=4 scaffold_99 . exon 131511 131540 . + . ID=Physo158354.4;Parent=Physo158354;constitutive=1;rank=4 scaffold_99 . CDS 131625 131718 . + 0 ID=Physo158354;Parent=Physo158354;rank=5 scaffold_99 . exon 131625 131718 . + . ID=Physo158354.5;Parent=Physo158354;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_99 . CDS 131789 131918 . + 0 ID=Physo158354;Parent=Physo158354;rank=6 scaffold_99 . exon 131789 131918 . + . ID=Physo158354.6;Parent=Physo158354;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_99 . CDS 131989 132208 . + 0 ID=Physo158354;Parent=Physo158354;rank=7 scaffold_99 . exon 131989 132208 . + . ID=Physo158354.7;Parent=Physo158354;constitutive=1;ensembl_phase=2;rank=7 scaffold_99 . repeat_region 137458 137476 . ? . description=dust scaffold_99 . biological_region 138770 138772 0.999 + . logic_name=eponine scaffold_99 . biological_region 139387 139392 0.999 + . logic_name=eponine scaffold_99 . biological_region 139662 139667 0.999 + . logic_name=eponine scaffold_99 . biological_region 139745 139747 0.999 + . logic_name=eponine scaffold_99 . biological_region 139867 139870 0.999 - . logic_name=eponine scaffold_99 . biological_region 139940 139943 0.999 - . logic_name=eponine scaffold_99 . repeat_region 140281 140288 . ? . description=dust scaffold_99 . biological_region 140284 140288 0.999 - . logic_name=eponine scaffold_99 . biological_region 141995 141997 0.999 + . logic_name=eponine scaffold_99 . repeat_region 143953 143960 . ? . description=dust scaffold_99 ensembl protein_coding_gene 138232 139353 . - . ID=Physo109398;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_990002;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 138232 139353 . - . ID=Physo109398;Parent=Physo109398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 138232 139353 . - 0 ID=Physo109398;Parent=Physo109398;rank=1 scaffold_99 . exon 138232 139353 . - . ID=Physo109398.1;Parent=Physo109398;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 142224 142895 . + . ID=Physo109399;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_990003;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 142224 142895 . + . ID=Physo109399;Parent=Physo109399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 142224 142895 . + 0 ID=Physo109399;Parent=Physo109399;rank=1 scaffold_99 . exon 142224 142895 . + . ID=Physo109399.1;Parent=Physo109399;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 139528 140341 . - . ID=Physo141484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990029;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 139528 140341 . - . ID=Physo141484;Parent=Physo141484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 139528 140041 . - 0 ID=Physo141484;Parent=Physo141484;rank=2 scaffold_99 . exon 139528 140041 . - . ID=Physo141484.2;Parent=Physo141484;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 140137 140270 . - 0 ID=Physo141484;Parent=Physo141484;rank=1 scaffold_99 . exon 140137 140341 . - . ID=Physo141484.1;Parent=Physo141484;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_99 ensembl protein_coding_gene 141102 141506 . - . ID=Physo141485;biotype=protein_coding;description=PsAvh246 [Source:UniProtKB/TrEMBL%3BAcc:E0W5K4];external_name=estExt_fgenesh1_pg.C_990030;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 141102 141506 . - . ID=Physo141485;Parent=Physo141485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 141102 141506 . - 0 ID=Physo141485;Parent=Physo141485;rank=1 scaffold_99 . exon 141102 141506 . - . ID=Physo141485.1;Parent=Physo141485;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 145586 148007 . + . ID=Physo141487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990032;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 145586 148007 . + . ID=Physo141487;Parent=Physo141487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 145586 145699 . + 0 ID=Physo141487;Parent=Physo141487;rank=1 scaffold_99 . exon 145586 145699 . + . ID=Physo141487.1;Parent=Physo141487;constitutive=1;rank=1 scaffold_99 . CDS 145721 146043 . + 0 ID=Physo141487;Parent=Physo141487;rank=2 scaffold_99 . CDS 146135 148007 . + 0 ID=Physo141487;Parent=Physo141487;rank=3 scaffold_99 . repeat_region 151346 151381 . ? . description=trf scaffold_99 ensembl protein_coding_gene 148161 149054 . + . ID=Physo109400;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_990004;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 148161 149054 . + . ID=Physo109400;Parent=Physo109400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 148161 149054 . + 0 ID=Physo109400;Parent=Physo109400;rank=1 scaffold_99 . exon 148161 149054 . + . ID=Physo109400.1;Parent=Physo109400;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 149249 149662 . + . ID=Physo109401;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_990005;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 149249 149662 . + . ID=Physo109401;Parent=Physo109401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 149249 149662 . + 0 ID=Physo109401;Parent=Physo109401;rank=1 scaffold_99 . exon 149249 149662 . + . ID=Physo109401.1;Parent=Physo109401;constitutive=1;rank=1 scaffold_99 . exon 145721 146043 . + . ID=Physo141487.2;Parent=Physo141487;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_99 . exon 146135 148007 . + . ID=Physo141487.3;Parent=Physo141487;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 . biological_region 164419 164419 0.999 - . logic_name=eponine scaffold_99 . biological_region 164443 164444 0.999 + . logic_name=eponine scaffold_99 . biological_region 165081 165085 0.999 - . logic_name=eponine scaffold_99 ensembl protein_coding_gene 162857 163816 . - . ID=Physo141490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990035;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 162857 163816 . - . ID=Physo141490;Parent=Physo141490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 162857 162881 . - 0 ID=Physo141490;Parent=Physo141490;rank=3 scaffold_99 . exon 162857 162881 . - . ID=Physo141490.3;Parent=Physo141490;constitutive=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 163069 163356 . - 0 ID=Physo141490;Parent=Physo141490;rank=2 scaffold_99 . exon 163069 163356 . - . ID=Physo141490.2;Parent=Physo141490;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_99 . CDS 163584 163816 . - 0 ID=Physo141490;Parent=Physo141490;rank=1 scaffold_99 . exon 163584 163816 . - . ID=Physo141490.1;Parent=Physo141490;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . repeat_region 165941 165948 . ? . description=dust scaffold_99 . repeat_region 168034 168041 . ? . description=dust scaffold_99 . repeat_region 173989 174009 . ? . description=trf scaffold_99 ensembl protein_coding_gene 171445 172168 . - . ID=Physo141491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990036;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 171445 172168 . - . ID=Physo141491;Parent=Physo141491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 171445 171669 . - 0 ID=Physo141491;Parent=Physo141491;rank=3 scaffold_99 . exon 171445 171669 . - . ID=Physo141491.3;Parent=Physo141491;constitutive=1;rank=3 scaffold_99 . CDS 171731 171888 . - 0 ID=Physo141491;Parent=Physo141491;rank=2 scaffold_99 . exon 171731 171888 . - . ID=Physo141491.2;Parent=Physo141491;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 171949 172168 . - 0 ID=Physo141491;Parent=Physo141491;rank=1 scaffold_99 . exon 171949 172168 . - . ID=Physo141491.1;Parent=Physo141491;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . biological_region 183629 183630 0.999 + . logic_name=eponine scaffold_99 . repeat_region 185302 185351 . ? . description=dust scaffold_99 . repeat_region 186251 186258 . ? . description=dust scaffold_99 . repeat_region 186611 186621 . ? . description=dust scaffold_99 . repeat_region 188660 188670 . ? . description=dust scaffold_99 ensembl snoRNA_gene 188331 188510 . + . ID=EPrPSOG00000000069;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_99 ensembl snoRNA 188331 188510 . + . ID=EPrPSOT00000000069;Parent=EPrPSOG00000000069;biotype=snoRNA;logic_name=ncrna_eg scaffold_99 . exon 188331 188510 . + . ID=EPrPSOE00000000069;Parent=EPrPSOT00000000069;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 187523 188048 . + . ID=Physo141492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990037;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 187523 188048 . + . ID=Physo141492;Parent=Physo141492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 187523 187794 . + 0 ID=Physo141492;Parent=Physo141492;rank=1 scaffold_99 . exon 187523 187794 . + . ID=Physo141492.1;Parent=Physo141492;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . CDS 187889 188048 . + 0 ID=Physo141492;Parent=Physo141492;rank=2 scaffold_99 . exon 187889 188048 . + . ID=Physo141492.2;Parent=Physo141492;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 ensembl protein_coding_gene 189002 189421 . - . ID=Physo141493;biotype=protein_coding;description=PsAvh254 [Source:UniProtKB/TrEMBL%3BAcc:E0W5K6];external_name=estExt_fgenesh1_pg.C_990038;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 189002 189421 . - . ID=Physo141493;Parent=Physo141493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 189002 189421 . - 0 ID=Physo141493;Parent=Physo141493;rank=1 scaffold_99 . exon 189002 189421 . - . ID=Physo141493.1;Parent=Physo141493;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 190541 196064 . - . ID=Physo141494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990039;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 190541 196064 . - . ID=Physo141494;Parent=Physo141494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 190541 193263 . - 0 ID=Physo141494;Parent=Physo141494;rank=8 scaffold_99 . exon 190541 193263 . - . ID=Physo141494.8;Parent=Physo141494;constitutive=1;ensembl_phase=1;rank=8 scaffold_99 . CDS 193334 193541 . - 0 ID=Physo141494;Parent=Physo141494;rank=7 scaffold_99 . exon 193334 193541 . - . ID=Physo141494.7;Parent=Physo141494;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_99 . CDS 193610 193718 . - 0 ID=Physo141494;Parent=Physo141494;rank=6 scaffold_99 . exon 193610 193718 . - . ID=Physo141494.6;Parent=Physo141494;constitutive=1;ensembl_phase=2;rank=6 scaffold_99 . CDS 193796 193877 . - 0 ID=Physo141494;Parent=Physo141494;rank=5 scaffold_99 . exon 193796 193877 . - . ID=Physo141494.5;Parent=Physo141494;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_99 . CDS 193954 194100 . - 0 ID=Physo141494;Parent=Physo141494;rank=4 scaffold_99 . exon 193954 194100 . - . ID=Physo141494.4;Parent=Physo141494;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_99 . CDS 194295 194382 . - 0 ID=Physo141494;Parent=Physo141494;rank=3 scaffold_99 . CDS 194471 195636 . - 0 ID=Physo141494;Parent=Physo141494;rank=2 scaffold_99 . CDS 195719 196064 . - 0 ID=Physo141494;Parent=Physo141494;rank=1 scaffold_99 . repeat_region 194422 194444 . ? . description=trf scaffold_99 . biological_region 195197 195201 0.999 - . logic_name=eponine scaffold_99 . repeat_region 195334 195363 . ? . description=trf scaffold_99 ensembl snoRNA_gene 196854 197058 . - . ID=EPrPSOG00000000061;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_99 ensembl snoRNA 196854 197058 . - . ID=EPrPSOT00000000061;Parent=EPrPSOG00000000061;biotype=snoRNA;logic_name=ncrna_eg scaffold_99 . exon 196854 197058 . - . ID=EPrPSOE00000000061;Parent=EPrPSOT00000000061;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . exon 194295 194382 . - . ID=Physo141494.3;Parent=Physo141494;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_99 . exon 194471 195636 . - . ID=Physo141494.2;Parent=Physo141494;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . exon 195719 196064 . - . ID=Physo141494.1;Parent=Physo141494;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 ensembl protein_coding_gene 197457 198492 . - . ID=Physo141495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990040;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 197457 198492 . - . ID=Physo141495;Parent=Physo141495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 197457 198017 . - 0 ID=Physo141495;Parent=Physo141495;rank=3 scaffold_99 . exon 197457 198017 . - . ID=Physo141495.3;Parent=Physo141495;constitutive=1;rank=3 scaffold_99 . CDS 198160 198369 . - 0 ID=Physo141495;Parent=Physo141495;rank=2 scaffold_99 . exon 198160 198369 . - . ID=Physo141495.2;Parent=Physo141495;constitutive=1;rank=2 scaffold_99 . CDS 198436 198492 . - 0 ID=Physo141495;Parent=Physo141495;rank=1 scaffold_99 . exon 198436 198492 . - . ID=Physo141495.1;Parent=Physo141495;constitutive=1;rank=1 scaffold_99 . repeat_region 205165 205172 . ? . description=dust scaffold_99 . repeat_region 206328 206382 . ? . description=dust scaffold_99 ensembl protein_coding_gene 207400 209041 . + . ID=Physo109402;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_990006;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 207400 209041 . + . ID=Physo109402;Parent=Physo109402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 207400 207559 . + 0 ID=Physo109402;Parent=Physo109402;rank=1 scaffold_99 . exon 207400 207559 . + . ID=Physo109402.1;Parent=Physo109402;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 207611 207692 . + 0 ID=Physo109402;Parent=Physo109402;rank=2 scaffold_99 . exon 207611 207692 . + . ID=Physo109402.2;Parent=Physo109402;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_99 . CDS 207771 207854 . + 0 ID=Physo109402;Parent=Physo109402;rank=3 scaffold_99 . exon 207771 207854 . + . ID=Physo109402.3;Parent=Physo109402;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_99 . CDS 207914 208559 . + 0 ID=Physo109402;Parent=Physo109402;rank=4 scaffold_99 . exon 207914 208559 . + . ID=Physo109402.4;Parent=Physo109402;constitutive=1;ensembl_phase=2;rank=4 scaffold_99 . CDS 208633 208702 . + 0 ID=Physo109402;Parent=Physo109402;rank=5 scaffold_99 . exon 208633 208702 . + . ID=Physo109402.5;Parent=Physo109402;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_99 . CDS 208788 208924 . + 0 ID=Physo109402;Parent=Physo109402;rank=6 scaffold_99 . exon 208788 208924 . + . ID=Physo109402.6;Parent=Physo109402;constitutive=1;ensembl_phase=1;rank=6 scaffold_99 . CDS 208979 209041 . + 0 ID=Physo109402;Parent=Physo109402;rank=7 scaffold_99 . exon 208979 209041 . + . ID=Physo109402.7;Parent=Physo109402;constitutive=1;rank=7 scaffold_99 ensembl protein_coding_gene 210481 211571 . - . ID=Physo122042;biotype=protein_coding;external_name=estExt_Genewise1.C_990026;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 210481 211571 . - . ID=Physo122042;Parent=Physo122042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 210481 210935 . - 0 ID=Physo122042;Parent=Physo122042;rank=4 scaffold_99 . exon 210481 210935 . - . ID=Physo122042.4;Parent=Physo122042;constitutive=1;ensembl_phase=1;rank=4 scaffold_99 . CDS 211014 211134 . - 0 ID=Physo122042;Parent=Physo122042;rank=3 scaffold_99 . exon 211014 211134 . - . ID=Physo122042.3;Parent=Physo122042;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_99 . CDS 211210 211407 . - 0 ID=Physo122042;Parent=Physo122042;rank=2 scaffold_99 . exon 211210 211407 . - . ID=Physo122042.2;Parent=Physo122042;constitutive=1;rank=2 scaffold_99 . CDS 211485 211511 . - 0 ID=Physo122042;Parent=Physo122042;rank=1 scaffold_99 . exon 211485 211571 . - . ID=Physo122042.1;Parent=Physo122042;constitutive=1;ensembl_phase=-1;rank=1 scaffold_99 ensembl protein_coding_gene 206782 207234 . + . ID=Physo141496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990041;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 206782 207234 . + . ID=Physo141496;Parent=Physo141496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 206782 207234 . + 0 ID=Physo141496;Parent=Physo141496;rank=1 scaffold_99 . exon 206782 207234 . + . ID=Physo141496.1;Parent=Physo141496;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 209250 210089 . - . ID=Physo141498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990043;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 209250 210089 . - . ID=Physo141498;Parent=Physo141498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . exon 209250 209516 . - . ID=Physo141498.3;Parent=Physo141498;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_99 . CDS 209328 209516 . - 0 ID=Physo141498;Parent=Physo141498;rank=3 scaffold_99 . CDS 209585 209766 . - 0 ID=Physo141498;Parent=Physo141498;rank=2 scaffold_99 . exon 209585 209766 . - . ID=Physo141498.2;Parent=Physo141498;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 . CDS 209836 210088 . - 0 ID=Physo141498;Parent=Physo141498;rank=1 scaffold_99 . exon 209836 210089 . - . ID=Physo141498.1;Parent=Physo141498;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_99 . biological_region 214205 214205 0.999 - . logic_name=eponine scaffold_99 . biological_region 214560 214561 0.999 - . logic_name=eponine scaffold_99 . biological_region 218070 218072 0.999 + . logic_name=eponine scaffold_99 . biological_region 218084 218084 0.999 + . logic_name=eponine scaffold_99 . biological_region 218158 218161 0.999 - . logic_name=eponine scaffold_99 . repeat_region 220554 220599 . ? . description=trf scaffold_99 ensembl protein_coding_gene 214816 217086 . - . ID=Physo141500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990045;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 214816 217086 . - . ID=Physo141500;Parent=Physo141500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 214816 215004 . - 0 ID=Physo141500;Parent=Physo141500;rank=8 scaffold_99 . exon 214816 215004 . - . ID=Physo141500.8;Parent=Physo141500;constitutive=1;rank=8 scaffold_99 . CDS 215076 215257 . - 0 ID=Physo141500;Parent=Physo141500;rank=7 scaffold_99 . exon 215076 215257 . - . ID=Physo141500.7;Parent=Physo141500;constitutive=1;ensembl_phase=1;rank=7 scaffold_99 . CDS 215333 215533 . - 0 ID=Physo141500;Parent=Physo141500;rank=6 scaffold_99 . exon 215333 215533 . - . ID=Physo141500.6;Parent=Physo141500;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_99 . CDS 215658 215716 . - 0 ID=Physo141500;Parent=Physo141500;rank=5 scaffold_99 . exon 215658 215716 . - . ID=Physo141500.5;Parent=Physo141500;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_99 . CDS 215790 215848 . - 0 ID=Physo141500;Parent=Physo141500;rank=4 scaffold_99 . exon 215790 215848 . - . ID=Physo141500.4;Parent=Physo141500;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_99 . CDS 215894 216451 . - 0 ID=Physo141500;Parent=Physo141500;rank=3 scaffold_99 . exon 215894 216451 . - . ID=Physo141500.3;Parent=Physo141500;constitutive=1;rank=3 scaffold_99 . CDS 216606 216773 . - 0 ID=Physo141500;Parent=Physo141500;rank=2 scaffold_99 . exon 216606 216773 . - . ID=Physo141500.2;Parent=Physo141500;constitutive=1;rank=2 scaffold_99 . CDS 216874 217086 . - 0 ID=Physo141500;Parent=Physo141500;rank=1 scaffold_99 . exon 216874 217086 . - . ID=Physo141500.1;Parent=Physo141500;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 218027 218350 . + . ID=Physo141501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990046;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 218027 218350 . + . ID=Physo141501;Parent=Physo141501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 218027 218350 . + 0 ID=Physo141501;Parent=Physo141501;rank=1 scaffold_99 . exon 218027 218350 . + . ID=Physo141501.1;Parent=Physo141501;constitutive=1;rank=1 scaffold_99 . repeat_region 227780 227795 . ? . description=dust scaffold_99 . repeat_region 228397 228404 . ? . description=dust scaffold_99 . repeat_region 228450 228462 . ? . description=dust scaffold_99 . repeat_region 229406 229428 . ? . description=dust scaffold_99 ensembl protein_coding_gene 225056 226354 . + . ID=Physo141502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990047;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 225056 226354 . + . ID=Physo141502;Parent=Physo141502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 225056 226354 . + 0 ID=Physo141502;Parent=Physo141502;rank=1 scaffold_99 . exon 225056 226354 . + . ID=Physo141502.1;Parent=Physo141502;constitutive=1;rank=1 scaffold_99 ensembl protein_coding_gene 229520 231704 . + . ID=Physo141503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990048;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 229520 231704 . + . ID=Physo141503;Parent=Physo141503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 229520 231071 . + 0 ID=Physo141503;Parent=Physo141503;rank=1 scaffold_99 . exon 229520 231071 . + . ID=Physo141503.1;Parent=Physo141503;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_99 . CDS 231328 231704 . + 0 ID=Physo141503;Parent=Physo141503;rank=2 scaffold_99 . exon 231328 231704 . + . ID=Physo141503.2;Parent=Physo141503;constitutive=1;ensembl_phase=1;rank=2 scaffold_99 ensembl protein_coding_gene 232721 235497 . + . ID=Physo141504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990049;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 232721 235497 . + . ID=Physo141504;Parent=Physo141504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 232721 233827 . + 0 ID=Physo141504;Parent=Physo141504;rank=1 scaffold_99 . exon 232721 233827 . + . ID=Physo141504.1;Parent=Physo141504;constitutive=1;rank=1 scaffold_99 . CDS 233932 235497 . + 0 ID=Physo141504;Parent=Physo141504;rank=2 scaffold_99 . repeat_region 239612 239635 . ? . description=trf scaffold_99 . repeat_region 239633 239696 . ? . description=trf scaffold_99 . biological_region 240412 240412 0.999 + . logic_name=eponine scaffold_99 . biological_region 242035 242039 0.999 + . logic_name=eponine scaffold_99 . repeat_region 242666 242760 . ? . description=trf scaffold_99 . exon 233932 235497 . + . ID=Physo141504.2;Parent=Physo141504;constitutive=1;rank=2 scaffold_99 ensembl protein_coding_gene 236400 237799 . + . ID=Physo141505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990050;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 236400 237799 . + . ID=Physo141505;Parent=Physo141505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 236400 236429 . + 0 ID=Physo141505;Parent=Physo141505;rank=1 scaffold_99 . exon 236400 236429 . + . ID=Physo141505.1;Parent=Physo141505;constitutive=1;rank=1 scaffold_99 . CDS 236531 237799 . + 0 ID=Physo141505;Parent=Physo141505;rank=2 scaffold_99 . exon 236531 237799 . + . ID=Physo141505.2;Parent=Physo141505;constitutive=1;rank=2 scaffold_99 ensembl protein_coding_gene 237953 242486 . - . ID=Physo141506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990051;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 237953 242486 . - . ID=Physo141506;Parent=Physo141506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 237953 240030 . - 0 ID=Physo141506;Parent=Physo141506;rank=7 scaffold_99 . exon 237953 240030 . - . ID=Physo141506.7;Parent=Physo141506;constitutive=1;ensembl_phase=1;rank=7 scaffold_99 . CDS 240331 240949 . - 0 ID=Physo141506;Parent=Physo141506;rank=6 scaffold_99 . exon 240331 240949 . - . ID=Physo141506.6;Parent=Physo141506;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_99 . CDS 241016 241031 . - 0 ID=Physo141506;Parent=Physo141506;rank=5 scaffold_99 . exon 241016 241031 . - . ID=Physo141506.5;Parent=Physo141506;constitutive=1;ensembl_phase=2;rank=5 scaffold_99 . CDS 241316 241848 . - 0 ID=Physo141506;Parent=Physo141506;rank=4 scaffold_99 . exon 241316 241848 . - . ID=Physo141506.4;Parent=Physo141506;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_99 . CDS 241961 242089 . - 0 ID=Physo141506;Parent=Physo141506;rank=3 scaffold_99 . exon 241961 242089 . - . ID=Physo141506.3;Parent=Physo141506;constitutive=1;rank=3 scaffold_99 . CDS 242129 242386 . - 0 ID=Physo141506;Parent=Physo141506;rank=2 scaffold_99 . exon 242129 242386 . - . ID=Physo141506.2;Parent=Physo141506;constitutive=1;rank=2 scaffold_99 . CDS 242454 242486 . - 0 ID=Physo141506;Parent=Physo141506;rank=1 scaffold_99 . exon 242454 242486 . - . ID=Physo141506.1;Parent=Physo141506;constitutive=1;rank=1 scaffold_99 . repeat_region 246785 246808 . ? . description=dust scaffold_99 ensembl protein_coding_gene 245059 246273 . - . ID=Physo141507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990052;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 245059 246273 . - . ID=Physo141507;Parent=Physo141507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 245059 245477 . - 0 ID=Physo141507;Parent=Physo141507;rank=4 scaffold_99 . exon 245059 245477 . - . ID=Physo141507.4;Parent=Physo141507;constitutive=1;ensembl_phase=1;rank=4 scaffold_99 . CDS 245587 245656 . - 0 ID=Physo141507;Parent=Physo141507;rank=3 scaffold_99 . exon 245587 245656 . - . ID=Physo141507.3;Parent=Physo141507;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_99 . CDS 245770 246025 . - 0 ID=Physo141507;Parent=Physo141507;rank=2 scaffold_99 . exon 245770 246025 . - . ID=Physo141507.2;Parent=Physo141507;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 246158 246273 . - 0 ID=Physo141507;Parent=Physo141507;rank=1 scaffold_99 . exon 246158 246273 . - . ID=Physo141507.1;Parent=Physo141507;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . biological_region 252650 252651 0.999 - . logic_name=eponine scaffold_99 . repeat_region 256549 256628 . ? . description=trf scaffold_99 . biological_region 257094 257097 0.999 + . logic_name=eponine scaffold_99 . biological_region 257540 257545 0.999 - . logic_name=eponine scaffold_99 . biological_region 257616 257617 0.999 - . logic_name=eponine scaffold_99 . biological_region 261070 261074 0.999 + . logic_name=eponine scaffold_99 . biological_region 261089 261094 0.999 + . logic_name=eponine scaffold_99 . biological_region 261092 261092 0.999 - . logic_name=eponine scaffold_99 . biological_region 261175 261179 0.999 + . logic_name=eponine scaffold_99 . biological_region 261190 261192 0.999 - . logic_name=eponine scaffold_99 . biological_region 261540 261542 0.999 - . logic_name=eponine scaffold_99 . biological_region 261566 261572 0.999 - . logic_name=eponine scaffold_99 . biological_region 261575 261583 0.999 - . logic_name=eponine scaffold_99 . biological_region 261634 261639 0.999 - . logic_name=eponine scaffold_99 . biological_region 261700 261703 0.999 - . logic_name=eponine scaffold_99 . biological_region 261778 261782 0.999 - . logic_name=eponine scaffold_99 . biological_region 261926 261926 0.999 + . logic_name=eponine scaffold_99 . biological_region 261998 262001 0.999 + . logic_name=eponine scaffold_99 . biological_region 262011 262012 0.999 + . logic_name=eponine scaffold_99 . biological_region 262050 262050 0.999 + . logic_name=eponine scaffold_99 . biological_region 262139 262145 0.999 - . logic_name=eponine scaffold_99 ensembl protein_coding_gene 257421 259349 . + . ID=Physo141508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990053;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 257421 259349 . + . ID=Physo141508;Parent=Physo141508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . exon 257421 257685 . + . ID=Physo141508.1;Parent=Physo141508;constitutive=1;ensembl_phase=-1;rank=1 scaffold_99 . CDS 257449 257685 . + 0 ID=Physo141508;Parent=Physo141508;rank=1 scaffold_99 . CDS 257768 257874 . + 0 ID=Physo141508;Parent=Physo141508;rank=2 scaffold_99 . exon 257768 257874 . + . ID=Physo141508.2;Parent=Physo141508;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_99 . CDS 257944 258011 . + 0 ID=Physo141508;Parent=Physo141508;rank=3 scaffold_99 . exon 257944 258011 . + . ID=Physo141508.3;Parent=Physo141508;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_99 . CDS 258092 258255 . + 0 ID=Physo141508;Parent=Physo141508;rank=4 scaffold_99 . exon 258092 258255 . + . ID=Physo141508.4;Parent=Physo141508;constitutive=1;ensembl_phase=1;rank=4 scaffold_99 . CDS 258329 258434 . + 0 ID=Physo141508;Parent=Physo141508;rank=5 scaffold_99 . exon 258329 258434 . + . ID=Physo141508.5;Parent=Physo141508;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_99 . CDS 258502 258596 . + 0 ID=Physo141508;Parent=Physo141508;rank=6 scaffold_99 . exon 258502 258596 . + . ID=Physo141508.6;Parent=Physo141508;constitutive=1;ensembl_phase=1;rank=6 scaffold_99 . CDS 258660 258821 . + 0 ID=Physo141508;Parent=Physo141508;rank=7 scaffold_99 . exon 258660 258821 . + . ID=Physo141508.7;Parent=Physo141508;constitutive=1;rank=7 scaffold_99 . CDS 258885 259115 . + 0 ID=Physo141508;Parent=Physo141508;rank=8 scaffold_99 . exon 258885 259115 . + . ID=Physo141508.8;Parent=Physo141508;constitutive=1;rank=8 scaffold_99 . CDS 259188 259349 . + 0 ID=Physo141508;Parent=Physo141508;rank=9 scaffold_99 . exon 259188 259349 . + . ID=Physo141508.9;Parent=Physo141508;constitutive=1;rank=9 scaffold_99 ensembl protein_coding_gene 259385 262241 . - . ID=Physo141509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990054;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 259385 262241 . - . ID=Physo141509;Parent=Physo141509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . exon 259385 262241 . - . ID=Physo141509.1;Parent=Physo141509;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_99 . CDS 259476 262241 . - 0 ID=Physo141509;Parent=Physo141509;rank=1 scaffold_99 . repeat_region 262256 262267 . ? . description=dust scaffold_99 . repeat_region 264101 264108 . ? . description=dust scaffold_99 ensembl protein_coding_gene 263505 263981 . + . ID=Physo141510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990055;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 263505 263981 . + . ID=Physo141510;Parent=Physo141510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 263505 263873 . + 0 ID=Physo141510;Parent=Physo141510;rank=1 scaffold_99 . exon 263505 263873 . + . ID=Physo141510.1;Parent=Physo141510;constitutive=1;rank=1 scaffold_99 . CDS 263973 263981 . + 0 ID=Physo141510;Parent=Physo141510;rank=2 scaffold_99 . exon 263973 263981 . + . ID=Physo141510.2;Parent=Physo141510;constitutive=1;rank=2 scaffold_99 ensembl protein_coding_gene 265582 266722 . - . ID=Physo141511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990056;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 265582 266722 . - . ID=Physo141511;Parent=Physo141511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . exon 265582 266722 . - . ID=Physo141511.1;Parent=Physo141511;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_99 . CDS 265718 266722 . - 0 ID=Physo141511;Parent=Physo141511;rank=1 scaffold_99 ensembl protein_coding_gene 271733 272792 . - . ID=Physo141512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990057;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 271733 272792 . - . ID=Physo141512;Parent=Physo141512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 271733 271990 . - 0 ID=Physo141512;Parent=Physo141512;rank=4 scaffold_99 . exon 271733 271990 . - . ID=Physo141512.4;Parent=Physo141512;constitutive=1;rank=4 scaffold_99 . CDS 272107 272123 . - 0 ID=Physo141512;Parent=Physo141512;rank=3 scaffold_99 . CDS 272167 272381 . - 0 ID=Physo141512;Parent=Physo141512;rank=2 scaffold_99 . CDS 272542 272792 . - 0 ID=Physo141512;Parent=Physo141512;rank=1 scaffold_99 . repeat_region 273350 273398 . ? . description=trf scaffold_99 . biological_region 280054 280056 0.999 - . logic_name=eponine scaffold_99 . biological_region 280123 280125 0.999 - . logic_name=eponine scaffold_99 . exon 272107 272123 . - . ID=Physo141512.3;Parent=Physo141512;constitutive=1;ensembl_phase=1;rank=3 scaffold_99 . exon 272167 272381 . - . ID=Physo141512.2;Parent=Physo141512;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_99 . exon 272542 272792 . - . ID=Physo141512.1;Parent=Physo141512;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_99 . repeat_region 283763 283771 . ? . description=dust scaffold_99 . repeat_region 283896 283904 . ? . description=dust scaffold_99 . repeat_region 285374 285383 . ? . description=dust scaffold_99 . repeat_region 292829 292970 . ? . description=trf scaffold_99 . biological_region 294368 294372 0.999 + . logic_name=eponine scaffold_99 . repeat_region 294376 294444 . ? . description=trf scaffold_99 . repeat_region 294416 294458 . ? . description=trf scaffold_99 . repeat_region 298729 299999 . + . description=Gypsy-1-I_PI-int scaffold_99 . biological_region 299488 299489 0.999 - . logic_name=eponine scaffold_99 . repeat_region 300385 301034 . + . description=Gypsy-1-I_PI-int scaffold_99 ensembl protein_coding_gene 300575 300982 . + . ID=Physo109403;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_990007;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 300575 300982 . + . ID=Physo109403;Parent=Physo109403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 300575 300982 . + 0 ID=Physo109403;Parent=Physo109403;rank=1 scaffold_99 . exon 300575 300982 . + . ID=Physo109403.1;Parent=Physo109403;constitutive=1;rank=1 scaffold_99 . repeat_region 310601 310608 . ? . description=dust scaffold_99 ensembl protein_coding_gene 302517 302720 . - . ID=Physo122017;biotype=protein_coding;external_name=estExt_Genewise1.C_990001;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 302517 302720 . - . ID=Physo122017;Parent=Physo122017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . exon 302517 302720 . - . ID=Physo122017.1;Parent=Physo122017;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_99 . CDS 302519 302719 . - 0 ID=Physo122017;Parent=Physo122017;rank=1 scaffold_99 ensembl protein_coding_gene 301511 302393 . - . ID=Physo141514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_990059;logic_name=jgi_physo1_1 scaffold_99 ensembl transcript 301511 302393 . - . ID=Physo141514;Parent=Physo141514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_99 . CDS 301511 301979 . - 0 ID=Physo141514;Parent=Physo141514;rank=2 scaffold_99 . exon 301511 301979 . - . ID=Physo141514.2;Parent=Physo141514;constitutive=1;ensembl_phase=2;rank=2 scaffold_99 . CDS 302182 302393 . - 0 ID=Physo141514;Parent=Physo141514;rank=1 scaffold_99 . exon 302182 302393 . - . ID=Physo141514.1;Parent=Physo141514;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_97 1 318929 scaffold_97 . biological_region 472 474 0.999 + . logic_name=eponine scaffold_97 . biological_region 801 803 0.999 + . logic_name=eponine scaffold_97 . repeat_region 825 890 . ? . description=trf scaffold_97 . repeat_region 825 940 . + . description=(TCG)n scaffold_97 . biological_region 3266 3268 0.999 + . logic_name=eponine scaffold_97 . repeat_region 5870 5900 . ? . description=trf scaffold_97 . repeat_region 6912 6919 . ? . description=dust scaffold_97 . repeat_region 9520 9527 . ? . description=dust scaffold_97 ensembl protein_coding_gene 144 713 . + . ID=Physo141313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970001;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 144 713 . + . ID=Physo141313;Parent=Physo141313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 144 401 . + 0 ID=Physo141313;Parent=Physo141313;rank=1 scaffold_97 . exon 144 401 . + . ID=Physo141313.1;Parent=Physo141313;constitutive=1;rank=1 scaffold_97 . CDS 429 713 . + 0 ID=Physo141313;Parent=Physo141313;rank=2 scaffold_97 . exon 429 713 . + . ID=Physo141313.2;Parent=Physo141313;constitutive=1;rank=2 scaffold_97 ensembl protein_coding_gene 18213 19240 . + . ID=Physo109378;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_970001;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 18213 19240 . + . ID=Physo109378;Parent=Physo109378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 18213 19081 . + 0 ID=Physo109378;Parent=Physo109378;rank=1 scaffold_97 . exon 18213 19081 . + . ID=Physo109378.1;Parent=Physo109378;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . CDS 19168 19240 . + 0 ID=Physo109378;Parent=Physo109378;rank=2 scaffold_97 . exon 19168 19240 . + . ID=Physo109378.2;Parent=Physo109378;constitutive=1;ensembl_phase=2;rank=2 scaffold_97 ensembl protein_coding_gene 11834 17953 . + . ID=Physo141314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970002;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 11834 17953 . + . ID=Physo141314;Parent=Physo141314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 11834 11869 . + 0 ID=Physo141314;Parent=Physo141314;rank=1 scaffold_97 . exon 11834 11869 . + . ID=Physo141314.1;Parent=Physo141314;constitutive=1;rank=1 scaffold_97 . CDS 11907 12153 . + 0 ID=Physo141314;Parent=Physo141314;rank=2 scaffold_97 . exon 11907 12153 . + . ID=Physo141314.2;Parent=Physo141314;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_97 . CDS 12220 12361 . + 0 ID=Physo141314;Parent=Physo141314;rank=3 scaffold_97 . exon 12220 12361 . + . ID=Physo141314.3;Parent=Physo141314;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_97 . CDS 12456 12486 . + 0 ID=Physo141314;Parent=Physo141314;rank=4 scaffold_97 . exon 12456 12486 . + . ID=Physo141314.4;Parent=Physo141314;constitutive=1;ensembl_phase=2;rank=4 scaffold_97 . CDS 12596 12683 . + 0 ID=Physo141314;Parent=Physo141314;rank=5 scaffold_97 . exon 12596 12683 . + . ID=Physo141314.5;Parent=Physo141314;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_97 . CDS 12822 13297 . + 0 ID=Physo141314;Parent=Physo141314;rank=6 scaffold_97 . exon 12822 13297 . + . ID=Physo141314.6;Parent=Physo141314;constitutive=1;ensembl_phase=1;rank=6 scaffold_97 . CDS 13363 13513 . + 0 ID=Physo141314;Parent=Physo141314;rank=7 scaffold_97 . exon 13363 13513 . + . ID=Physo141314.7;Parent=Physo141314;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_97 . CDS 13574 13652 . + 0 ID=Physo141314;Parent=Physo141314;rank=8 scaffold_97 . exon 13574 13652 . + . ID=Physo141314.8;Parent=Physo141314;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_97 . CDS 13716 13946 . + 0 ID=Physo141314;Parent=Physo141314;rank=9 scaffold_97 . exon 13716 13946 . + . ID=Physo141314.9;Parent=Physo141314;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_97 . CDS 14037 14115 . + 0 ID=Physo141314;Parent=Physo141314;rank=10 scaffold_97 . exon 14037 14115 . + . ID=Physo141314.10;Parent=Physo141314;constitutive=1;ensembl_phase=2;rank=10 scaffold_97 . CDS 14163 14630 . + 0 ID=Physo141314;Parent=Physo141314;rank=11 scaffold_97 . exon 14163 14630 . + . ID=Physo141314.11;Parent=Physo141314;constitutive=1;rank=11 scaffold_97 . CDS 14724 14909 . + 0 ID=Physo141314;Parent=Physo141314;rank=12 scaffold_97 . exon 14724 14909 . + . ID=Physo141314.12;Parent=Physo141314;constitutive=1;rank=12 scaffold_97 . CDS 14940 15020 . + 0 ID=Physo141314;Parent=Physo141314;rank=13 scaffold_97 . exon 14940 15020 . + . ID=Physo141314.13;Parent=Physo141314;constitutive=1;rank=13 scaffold_97 . CDS 15426 16040 . + 0 ID=Physo141314;Parent=Physo141314;rank=14 scaffold_97 . exon 15426 16040 . + . ID=Physo141314.14;Parent=Physo141314;constitutive=1;rank=14 scaffold_97 . CDS 16434 16855 . + 0 ID=Physo141314;Parent=Physo141314;rank=15 scaffold_97 . exon 16434 16855 . + . ID=Physo141314.15;Parent=Physo141314;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_97 . CDS 16927 16980 . + 0 ID=Physo141314;Parent=Physo141314;rank=16 scaffold_97 . exon 16927 16980 . + . ID=Physo141314.16;Parent=Physo141314;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=16 scaffold_97 . CDS 17058 17154 . + 0 ID=Physo141314;Parent=Physo141314;rank=17 scaffold_97 . exon 17058 17154 . + . ID=Physo141314.17;Parent=Physo141314;constitutive=1;ensembl_phase=2;rank=17 scaffold_97 . CDS 17232 17313 . + 0 ID=Physo141314;Parent=Physo141314;rank=18 scaffold_97 . exon 17232 17313 . + . ID=Physo141314.18;Parent=Physo141314;constitutive=1;ensembl_end_phase=1;rank=18 scaffold_97 . CDS 17416 17798 . + 0 ID=Physo141314;Parent=Physo141314;rank=19 scaffold_97 . exon 17416 17953 . + . ID=Physo141314.19;Parent=Physo141314;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=19 scaffold_97 ensembl protein_coding_gene 19441 24037 . - . ID=Physo141316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970004;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 19441 24037 . - . ID=Physo141316;Parent=Physo141316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 19441 22539 . - 0 ID=Physo141316;Parent=Physo141316;rank=4 scaffold_97 . exon 19441 22539 . - . ID=Physo141316.4;Parent=Physo141316;constitutive=1;rank=4 scaffold_97 . CDS 22616 22804 . - 0 ID=Physo141316;Parent=Physo141316;rank=3 scaffold_97 . CDS 23083 23548 . - 0 ID=Physo141316;Parent=Physo141316;rank=2 scaffold_97 . CDS 23622 24037 . - 0 ID=Physo141316;Parent=Physo141316;rank=1 scaffold_97 . biological_region 22485 22488 0.999 - . logic_name=eponine scaffold_97 . biological_region 23253 23255 0.999 + . logic_name=eponine scaffold_97 . biological_region 28656 28659 0.999 - . logic_name=eponine scaffold_97 . exon 22616 22804 . - . ID=Physo141316.3;Parent=Physo141316;constitutive=1;rank=3 scaffold_97 . exon 23083 23548 . - . ID=Physo141316.2;Parent=Physo141316;constitutive=1;ensembl_phase=2;rank=2 scaffold_97 . exon 23622 24037 . - . ID=Physo141316.1;Parent=Physo141316;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . repeat_region 36460 36467 . ? . description=dust scaffold_97 . repeat_region 37956 37972 . ? . description=dust scaffold_97 ensembl protein_coding_gene 30209 31600 . - . ID=Physo141317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970005;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 30209 31600 . - . ID=Physo141317;Parent=Physo141317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 30209 31600 . - 0 ID=Physo141317;Parent=Physo141317;rank=1 scaffold_97 . exon 30209 31600 . - . ID=Physo141317.1;Parent=Physo141317;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 33512 34909 . + . ID=Physo141318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970006;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 33512 34909 . + . ID=Physo141318;Parent=Physo141318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 33512 34909 . + 0 ID=Physo141318;Parent=Physo141318;rank=1 scaffold_97 . exon 33512 34909 . + . ID=Physo141318.1;Parent=Physo141318;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 38809 41241 . + . ID=Physo141319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970007;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 38809 41241 . + . ID=Physo141319;Parent=Physo141319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 38809 41241 . + 0 ID=Physo141319;Parent=Physo141319;rank=1 scaffold_97 . exon 38809 41241 . + . ID=Physo141319.1;Parent=Physo141319;constitutive=1;rank=1 scaffold_97 . biological_region 47496 47497 0.999 - . logic_name=eponine scaffold_97 ensembl protein_coding_gene 41420 42347 . - . ID=Physo141320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970008;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 41420 42347 . - . ID=Physo141320;Parent=Physo141320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 41420 41658 . - 0 ID=Physo141320;Parent=Physo141320;rank=3 scaffold_97 . exon 41420 41658 . - . ID=Physo141320.3;Parent=Physo141320;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 41760 41802 . - 0 ID=Physo141320;Parent=Physo141320;rank=2 scaffold_97 . exon 41760 41802 . - . ID=Physo141320.2;Parent=Physo141320;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_97 . CDS 41880 42347 . - 0 ID=Physo141320;Parent=Physo141320;rank=1 scaffold_97 . exon 41880 42347 . - . ID=Physo141320.1;Parent=Physo141320;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 45844 47888 . - . ID=Physo141321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970009;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 45844 47888 . - . ID=Physo141321;Parent=Physo141321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 45844 46796 . - 0 ID=Physo141321;Parent=Physo141321;rank=2 scaffold_97 . exon 45844 46796 . - . ID=Physo141321.2;Parent=Physo141321;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 46823 47888 . - 0 ID=Physo141321;Parent=Physo141321;rank=1 scaffold_97 . exon 46823 47888 . - . ID=Physo141321.1;Parent=Physo141321;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 48275 49389 . + . ID=Physo141322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970010;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 48275 49389 . + . ID=Physo141322;Parent=Physo141322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . exon 48275 49389 . + . ID=Physo141322.1;Parent=Physo141322;constitutive=1;ensembl_phase=-1;rank=1 scaffold_97 . CDS 48277 49389 . + 0 ID=Physo141322;Parent=Physo141322;rank=1 scaffold_97 ensembl protein_coding_gene 49556 50350 . - . ID=Physo141323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970011;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 49556 50350 . - . ID=Physo141323;Parent=Physo141323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 49556 50350 . - 0 ID=Physo141323;Parent=Physo141323;rank=1 scaffold_97 . exon 49556 50350 . - . ID=Physo141323.1;Parent=Physo141323;constitutive=1;rank=1 scaffold_97 . repeat_region 55456 55494 . ? . description=dust scaffold_97 . repeat_region 55456 55494 . ? . description=trf scaffold_97 . repeat_region 58877 58897 . ? . description=trf scaffold_97 ensembl protein_coding_gene 50890 52017 . + . ID=Physo141324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970012;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 50890 52017 . + . ID=Physo141324;Parent=Physo141324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 50890 51768 . + 0 ID=Physo141324;Parent=Physo141324;rank=1 scaffold_97 . exon 50890 51768 . + . ID=Physo141324.1;Parent=Physo141324;constitutive=1;rank=1 scaffold_97 . CDS 51840 51924 . + 0 ID=Physo141324;Parent=Physo141324;rank=2 scaffold_97 . exon 51840 51924 . + . ID=Physo141324.2;Parent=Physo141324;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_97 . CDS 51986 52017 . + 0 ID=Physo141324;Parent=Physo141324;rank=3 scaffold_97 . exon 51986 52017 . + . ID=Physo141324.3;Parent=Physo141324;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 ensembl protein_coding_gene 52355 54658 . - . ID=Physo141325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970013;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 52355 54658 . - . ID=Physo141325;Parent=Physo141325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 52355 53200 . - 0 ID=Physo141325;Parent=Physo141325;rank=3 scaffold_97 . exon 52355 53200 . - . ID=Physo141325.3;Parent=Physo141325;constitutive=1;rank=3 scaffold_97 . CDS 53271 53971 . - 0 ID=Physo141325;Parent=Physo141325;rank=2 scaffold_97 . exon 53271 53971 . - . ID=Physo141325.2;Parent=Physo141325;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 54010 54658 . - 0 ID=Physo141325;Parent=Physo141325;rank=1 scaffold_97 . exon 54010 54658 . - . ID=Physo141325.1;Parent=Physo141325;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 55248 58975 . + . ID=Physo141326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970014;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 55248 58975 . + . ID=Physo141326;Parent=Physo141326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 55248 56703 . + 0 ID=Physo141326;Parent=Physo141326;rank=1 scaffold_97 . exon 55248 56703 . + . ID=Physo141326.1;Parent=Physo141326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 . CDS 57059 58419 . + 0 ID=Physo141326;Parent=Physo141326;rank=2 scaffold_97 . exon 57059 58419 . + . ID=Physo141326.2;Parent=Physo141326;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 58527 58625 . + 0 ID=Physo141326;Parent=Physo141326;rank=3 scaffold_97 . exon 58527 58625 . + . ID=Physo141326.3;Parent=Physo141326;constitutive=1;rank=3 scaffold_97 . CDS 58655 58975 . + 0 ID=Physo141326;Parent=Physo141326;rank=4 scaffold_97 . exon 58655 58975 . + . ID=Physo141326.4;Parent=Physo141326;constitutive=1;rank=4 scaffold_97 ensembl protein_coding_gene 59654 61895 . - . ID=Physo141327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970015;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 59654 61895 . - . ID=Physo141327;Parent=Physo141327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 59654 60713 . - 0 ID=Physo141327;Parent=Physo141327;rank=2 scaffold_97 . exon 59654 60713 . - . ID=Physo141327.2;Parent=Physo141327;constitutive=1;ensembl_phase=2;rank=2 scaffold_97 . CDS 60922 61895 . - 0 ID=Physo141327;Parent=Physo141327;rank=1 scaffold_97 . biological_region 61700 61703 0.999 + . logic_name=eponine scaffold_97 . biological_region 62397 62402 0.999 - . logic_name=eponine scaffold_97 . biological_region 62557 62561 0.999 - . logic_name=eponine scaffold_97 . biological_region 62611 62612 0.999 + . logic_name=eponine scaffold_97 . biological_region 62810 62813 0.999 - . logic_name=eponine scaffold_97 . biological_region 62906 62907 0.999 - . logic_name=eponine scaffold_97 . biological_region 65892 65893 0.999 - . logic_name=eponine scaffold_97 . biological_region 65947 65947 0.999 + . logic_name=eponine scaffold_97 . biological_region 66023 66024 0.999 - . logic_name=eponine scaffold_97 . biological_region 66833 66834 0.999 - . logic_name=eponine scaffold_97 . biological_region 67362 67366 0.999 + . logic_name=eponine scaffold_97 . biological_region 67447 67448 0.999 - . logic_name=eponine scaffold_97 . biological_region 67620 67623 0.999 - . logic_name=eponine scaffold_97 . biological_region 67637 67642 0.999 + . logic_name=eponine scaffold_97 . biological_region 67991 67994 0.999 + . logic_name=eponine scaffold_97 . biological_region 68040 68047 0.999 + . logic_name=eponine scaffold_97 . biological_region 68635 68640 0.999 - . logic_name=eponine scaffold_97 . biological_region 68689 68696 0.999 + . logic_name=eponine scaffold_97 . biological_region 68712 68713 0.999 + . logic_name=eponine scaffold_97 . biological_region 68988 68991 0.999 + . logic_name=eponine scaffold_97 . biological_region 69167 69171 0.999 + . logic_name=eponine scaffold_97 . exon 60922 61895 . - . ID=Physo141327.1;Parent=Physo141327;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 ensembl protein_coding_gene 62468 63955 . + . ID=Physo141328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970016;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 62468 63955 . + . ID=Physo141328;Parent=Physo141328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 62468 63955 . + 0 ID=Physo141328;Parent=Physo141328;rank=1 scaffold_97 . exon 62468 63955 . + . ID=Physo141328.1;Parent=Physo141328;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 64022 65263 . - . ID=Physo141329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970017;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 64022 65263 . - . ID=Physo141329;Parent=Physo141329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 64022 64419 . - 0 ID=Physo141329;Parent=Physo141329;rank=2 scaffold_97 . exon 64022 64419 . - . ID=Physo141329.2;Parent=Physo141329;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 64489 65263 . - 0 ID=Physo141329;Parent=Physo141329;rank=1 scaffold_97 . exon 64489 65263 . - . ID=Physo141329.1;Parent=Physo141329;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 65998 72006 . + . ID=Physo158338;biotype=protein_coding;external_name=C_scaffold_97000002;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 65998 72006 . + . ID=Physo158338;Parent=Physo158338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 65998 66460 . + 0 ID=Physo158338;Parent=Physo158338;rank=1 scaffold_97 . exon 65998 66460 . + . ID=Physo158338.1;Parent=Physo158338;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 . CDS 66541 66979 . + 0 ID=Physo158338;Parent=Physo158338;rank=2 scaffold_97 . exon 66541 66979 . + . ID=Physo158338.2;Parent=Physo158338;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_97 . CDS 67088 67690 . + 0 ID=Physo158338;Parent=Physo158338;rank=3 scaffold_97 . exon 67088 67690 . + . ID=Physo158338.3;Parent=Physo158338;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_97 . CDS 67875 68624 . + 0 ID=Physo158338;Parent=Physo158338;rank=4 scaffold_97 . exon 67875 68624 . + . ID=Physo158338.4;Parent=Physo158338;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_97 . CDS 68667 69111 . + 0 ID=Physo158338;Parent=Physo158338;rank=5 scaffold_97 . exon 68667 69111 . + . ID=Physo158338.5;Parent=Physo158338;constitutive=1;ensembl_phase=2;rank=5 scaffold_97 . CDS 69136 69404 . + 0 ID=Physo158338;Parent=Physo158338;rank=6 scaffold_97 . exon 69136 69404 . + . ID=Physo158338.6;Parent=Physo158338;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_97 . CDS 70136 70154 . + 0 ID=Physo158338;Parent=Physo158338;rank=7 scaffold_97 . CDS 70778 70850 . + 0 ID=Physo158338;Parent=Physo158338;rank=8 scaffold_97 . CDS 70991 71763 . + 0 ID=Physo158338;Parent=Physo158338;rank=9 scaffold_97 . CDS 71797 72006 . + 0 ID=Physo158338;Parent=Physo158338;rank=10 scaffold_97 . repeat_region 74556 74596 . ? . description=trf scaffold_97 . repeat_region 75814 75929 . ? . description=trf scaffold_97 . repeat_region 76895 76955 . ? . description=trf scaffold_97 . exon 70136 70154 . + . ID=Physo158338.7;Parent=Physo158338;constitutive=1;ensembl_phase=2;rank=7 scaffold_97 . exon 70778 70850 . + . ID=Physo158338.8;Parent=Physo158338;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_97 . exon 70991 71763 . + . ID=Physo158338.9;Parent=Physo158338;constitutive=1;ensembl_phase=1;rank=9 scaffold_97 . exon 71797 72006 . + . ID=Physo158338.10;Parent=Physo158338;constitutive=1;rank=10 scaffold_97 . biological_region 81486 81490 0.999 - . logic_name=eponine scaffold_97 . repeat_region 81511 81518 . ? . description=dust scaffold_97 . repeat_region 81620 81631 . ? . description=dust scaffold_97 . repeat_region 81806 81851 . ? . description=dust scaffold_97 . biological_region 82815 82817 0.999 + . logic_name=eponine scaffold_97 . biological_region 82882 82886 0.999 - . logic_name=eponine scaffold_97 . repeat_region 86098 86106 . ? . description=dust scaffold_97 ensembl protein_coding_gene 82169 83507 . + . ID=Physo141332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970020;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 82169 83507 . + . ID=Physo141332;Parent=Physo141332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . exon 82169 83507 . + . ID=Physo141332.1;Parent=Physo141332;constitutive=1;ensembl_phase=-1;rank=1 scaffold_97 . CDS 82194 83507 . + 0 ID=Physo141332;Parent=Physo141332;rank=1 scaffold_97 ensembl protein_coding_gene 84556 85800 . + . ID=Physo141333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970021;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 84556 85800 . + . ID=Physo141333;Parent=Physo141333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 84556 85800 . + 0 ID=Physo141333;Parent=Physo141333;rank=1 scaffold_97 . exon 84556 85800 . + . ID=Physo141333.1;Parent=Physo141333;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 86594 87151 . + . ID=Physo141334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970022;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 86594 87151 . + . ID=Physo141334;Parent=Physo141334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 86594 87151 . + 0 ID=Physo141334;Parent=Physo141334;rank=1 scaffold_97 . exon 86594 87151 . + . ID=Physo141334.1;Parent=Physo141334;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 87376 88729 . - . ID=Physo141335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970023;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 87376 88729 . - . ID=Physo141335;Parent=Physo141335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . exon 87376 88729 . - . ID=Physo141335.1;Parent=Physo141335;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_97 . CDS 87477 88727 . - 0 ID=Physo141335;Parent=Physo141335;rank=1 scaffold_97 ensembl protein_coding_gene 89077 90127 . - . ID=Physo158341;biotype=protein_coding;external_name=C_scaffold_97000005;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 89077 90127 . - . ID=Physo158341;Parent=Physo158341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 89077 89198 . - 0 ID=Physo158341;Parent=Physo158341;rank=4 scaffold_97 . exon 89077 89198 . - . ID=Physo158341.4;Parent=Physo158341;constitutive=1;ensembl_phase=1;rank=4 scaffold_97 . CDS 89258 89510 . - 0 ID=Physo158341;Parent=Physo158341;rank=3 scaffold_97 . exon 89258 89510 . - . ID=Physo158341.3;Parent=Physo158341;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_97 . CDS 89661 89813 . - 0 ID=Physo158341;Parent=Physo158341;rank=2 scaffold_97 . exon 89661 89813 . - . ID=Physo158341.2;Parent=Physo158341;constitutive=1;rank=2 scaffold_97 . CDS 89933 90127 . - 0 ID=Physo158341;Parent=Physo158341;rank=1 scaffold_97 . repeat_region 90960 90997 . ? . description=trf scaffold_97 . repeat_region 93394 93445 . ? . description=trf scaffold_97 . repeat_region 93397 93443 . ? . description=trf scaffold_97 ensembl protein_coding_gene 95082 96161 . + . ID=Physo109380;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_970003;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 95082 96161 . + . ID=Physo109380;Parent=Physo109380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 95082 96161 . + 0 ID=Physo109380;Parent=Physo109380;rank=1 scaffold_97 . exon 95082 96161 . + . ID=Physo109380.1;Parent=Physo109380;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 91229 92670 . - . ID=Physo121851;biotype=protein_coding;external_name=estExt_Genewise1.C_970006;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 91229 92670 . - . ID=Physo121851;Parent=Physo121851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 91229 91292 . - 0 ID=Physo121851;Parent=Physo121851;rank=5 scaffold_97 . exon 91229 91292 . - . ID=Physo121851.7;Parent=Physo121851;constitutive=1;ensembl_phase=2;rank=7 scaffold_97 . CDS 91361 91486 . - 0 ID=Physo121851;Parent=Physo121851;rank=4 scaffold_97 . exon 91361 91486 . - . ID=Physo121851.6;Parent=Physo121851;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_97 . CDS 91554 91684 . - 0 ID=Physo121851;Parent=Physo121851;rank=3 scaffold_97 . exon 91554 91684 . - . ID=Physo121851.5;Parent=Physo121851;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_97 . CDS 91757 92199 . - 0 ID=Physo121851;Parent=Physo121851;rank=2 scaffold_97 . exon 91757 92199 . - . ID=Physo121851.4;Parent=Physo121851;constitutive=1;ensembl_phase=1;rank=4 scaffold_97 . CDS 92286 92352 . - 0 ID=Physo121851;Parent=Physo121851;rank=1 scaffold_97 . exon 92286 92376 . - . ID=Physo121851.3;Parent=Physo121851;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=3 scaffold_97 . exon 92450 92531 . - . ID=Physo121851.2;Parent=Physo121851;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_97 . exon 92624 92670 . - . ID=Physo121851.1;Parent=Physo121851;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_97 ensembl protein_coding_gene 96302 96755 . - . ID=Physo141339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970027;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 96302 96755 . - . ID=Physo141339;Parent=Physo141339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 96302 96543 . - 0 ID=Physo141339;Parent=Physo141339;rank=2 scaffold_97 . exon 96302 96543 . - . ID=Physo141339.2;Parent=Physo141339;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 96620 96755 . - 0 ID=Physo141339;Parent=Physo141339;rank=1 scaffold_97 . exon 96620 96755 . - . ID=Physo141339.1;Parent=Physo141339;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 96940 98435 . - . ID=Physo141340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970028;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 96940 98435 . - . ID=Physo141340;Parent=Physo141340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 96940 97104 . - 0 ID=Physo141340;Parent=Physo141340;rank=6 scaffold_97 . exon 96940 97104 . - . ID=Physo141340.8;Parent=Physo141340;constitutive=1;rank=8 scaffold_97 . CDS 97177 97312 . - 0 ID=Physo141340;Parent=Physo141340;rank=5 scaffold_97 . exon 97177 97312 . - . ID=Physo141340.7;Parent=Physo141340;constitutive=1;ensembl_phase=2;rank=7 scaffold_97 . CDS 97374 97561 . - 0 ID=Physo141340;Parent=Physo141340;rank=4 scaffold_97 . exon 97374 97561 . - . ID=Physo141340.6;Parent=Physo141340;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_97 . CDS 97623 97742 . - 0 ID=Physo141340;Parent=Physo141340;rank=3 scaffold_97 . exon 97623 97742 . - . ID=Physo141340.5;Parent=Physo141340;constitutive=1;rank=5 scaffold_97 . CDS 97838 97917 . - 0 ID=Physo141340;Parent=Physo141340;rank=2 scaffold_97 . exon 97838 97917 . - . ID=Physo141340.4;Parent=Physo141340;constitutive=1;ensembl_phase=1;rank=4 scaffold_97 . CDS 97992 98076 . - 0 ID=Physo141340;Parent=Physo141340;rank=1 scaffold_97 . exon 97992 98133 . - . ID=Physo141340.3;Parent=Physo141340;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=3 scaffold_97 . exon 98210 98274 . - . ID=Physo141340.2;Parent=Physo141340;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_97 . exon 98361 98435 . - . ID=Physo141340.1;Parent=Physo141340;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_97 . exon 89933 90127 . - . ID=Physo158341.1;Parent=Physo158341;constitutive=1;rank=1 scaffold_97 . repeat_region 99942 99950 . ? . description=dust scaffold_97 . biological_region 101097 101099 0.999 + . logic_name=eponine scaffold_97 . biological_region 102900 102904 0.999 + . logic_name=eponine scaffold_97 . biological_region 102904 102907 0.999 - . logic_name=eponine scaffold_97 . biological_region 102963 102964 0.999 + . logic_name=eponine scaffold_97 . biological_region 102992 102994 0.999 + . logic_name=eponine scaffold_97 . biological_region 102995 103001 0.999 - . logic_name=eponine scaffold_97 . biological_region 103080 103085 0.999 + . logic_name=eponine scaffold_97 . biological_region 103098 103103 0.999 - . logic_name=eponine scaffold_97 . biological_region 106249 106251 0.999 + . logic_name=eponine scaffold_97 . biological_region 107036 107038 0.999 + . logic_name=eponine scaffold_97 ensembl protein_coding_gene 105988 106446 . - . ID=Physo141341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970029;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 105988 106446 . - . ID=Physo141341;Parent=Physo141341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 105988 106446 . - 0 ID=Physo141341;Parent=Physo141341;rank=1 scaffold_97 . exon 105988 106446 . - . ID=Physo141341.1;Parent=Physo141341;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 111428 115629 . + . ID=Physo141342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970030;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 111428 115629 . + . ID=Physo141342;Parent=Physo141342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . exon 111428 111618 . + . ID=Physo141342.1;Parent=Physo141342;constitutive=1;ensembl_phase=-1;rank=1 scaffold_97 . CDS 111460 111618 . + 0 ID=Physo141342;Parent=Physo141342;rank=1 scaffold_97 . CDS 111690 111900 . + 0 ID=Physo141342;Parent=Physo141342;rank=2 scaffold_97 . exon 111690 111900 . + . ID=Physo141342.2;Parent=Physo141342;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_97 . CDS 111978 112587 . + 0 ID=Physo141342;Parent=Physo141342;rank=3 scaffold_97 . exon 111978 112587 . + . ID=Physo141342.3;Parent=Physo141342;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_97 . CDS 112966 113383 . + 0 ID=Physo141342;Parent=Physo141342;rank=4 scaffold_97 . exon 112966 113383 . + . ID=Physo141342.4;Parent=Physo141342;constitutive=1;ensembl_phase=2;rank=4 scaffold_97 . CDS 113471 113645 . + 0 ID=Physo141342;Parent=Physo141342;rank=5 scaffold_97 . exon 113471 113645 . + . ID=Physo141342.5;Parent=Physo141342;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_97 . CDS 113738 115629 . + 0 ID=Physo141342;Parent=Physo141342;rank=6 scaffold_97 . exon 113738 115629 . + . ID=Physo141342.6;Parent=Physo141342;constitutive=1;ensembl_phase=1;rank=6 scaffold_97 ensembl protein_coding_gene 115749 120709 . - . ID=Physo141343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970031;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 115749 120709 . - . ID=Physo141343;Parent=Physo141343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 115749 115778 . - 0 ID=Physo141343;Parent=Physo141343;rank=7 scaffold_97 . exon 115749 115778 . - . ID=Physo141343.7;Parent=Physo141343;constitutive=1;rank=7 scaffold_97 . CDS 115887 118024 . - 0 ID=Physo141343;Parent=Physo141343;rank=6 scaffold_97 . exon 115887 118024 . - . ID=Physo141343.6;Parent=Physo141343;constitutive=1;ensembl_phase=1;rank=6 scaffold_97 . CDS 118237 118292 . - 0 ID=Physo141343;Parent=Physo141343;rank=5 scaffold_97 . exon 118237 118292 . - . ID=Physo141343.5;Parent=Physo141343;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_97 . CDS 118417 118988 . - 0 ID=Physo141343;Parent=Physo141343;rank=4 scaffold_97 . exon 118417 118988 . - . ID=Physo141343.4;Parent=Physo141343;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_97 . CDS 119318 120151 . - 0 ID=Physo141343;Parent=Physo141343;rank=3 scaffold_97 . exon 119318 120151 . - . ID=Physo141343.3;Parent=Physo141343;constitutive=1;rank=3 scaffold_97 . CDS 120226 120275 . - 0 ID=Physo141343;Parent=Physo141343;rank=2 scaffold_97 . CDS 120361 120709 . - 0 ID=Physo141343;Parent=Physo141343;rank=1 scaffold_97 . repeat_region 121263 121309 . ? . description=trf scaffold_97 . biological_region 122490 122492 0.999 - . logic_name=eponine scaffold_97 . repeat_region 125017 125038 . ? . description=trf scaffold_97 . repeat_region 125017 125038 . ? . description=dust scaffold_97 . biological_region 125084 125090 0.999 + . logic_name=eponine scaffold_97 . biological_region 128623 128629 0.999 - . logic_name=eponine scaffold_97 . repeat_region 128663 128692 . ? . description=dust scaffold_97 ensembl protein_coding_gene 127907 128656 . + . ID=Physo109381;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_970004;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 127907 128656 . + . ID=Physo109381;Parent=Physo109381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 127907 128656 . + 0 ID=Physo109381;Parent=Physo109381;rank=1 scaffold_97 . exon 127907 128656 . + . ID=Physo109381.1;Parent=Physo109381;constitutive=1;rank=1 scaffold_97 . exon 120226 120275 . - . ID=Physo141343.2;Parent=Physo141343;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . exon 120361 120709 . - . ID=Physo141343.1;Parent=Physo141343;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 121365 123271 . + . ID=Physo141344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970032;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 121365 123271 . + . ID=Physo141344;Parent=Physo141344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 121365 121434 . + 0 ID=Physo141344;Parent=Physo141344;rank=1 scaffold_97 . exon 121365 121434 . + . ID=Physo141344.1;Parent=Physo141344;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 . CDS 121520 121679 . + 0 ID=Physo141344;Parent=Physo141344;rank=2 scaffold_97 . exon 121520 121679 . + . ID=Physo141344.2;Parent=Physo141344;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_97 . CDS 121763 121853 . + 0 ID=Physo141344;Parent=Physo141344;rank=3 scaffold_97 . exon 121763 121853 . + . ID=Physo141344.3;Parent=Physo141344;constitutive=1;ensembl_phase=2;rank=3 scaffold_97 . CDS 121925 123271 . + 0 ID=Physo141344;Parent=Physo141344;rank=4 scaffold_97 . exon 121925 123271 . + . ID=Physo141344.4;Parent=Physo141344;constitutive=1;rank=4 scaffold_97 ensembl protein_coding_gene 125056 125805 . - . ID=Physo141345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970033;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 125056 125805 . - . ID=Physo141345;Parent=Physo141345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 125056 125805 . - 0 ID=Physo141345;Parent=Physo141345;rank=1 scaffold_97 . exon 125056 125805 . - . ID=Physo141345.1;Parent=Physo141345;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 129901 130655 . - . ID=Physo141347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970035;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 129901 130655 . - . ID=Physo141347;Parent=Physo141347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 129901 130469 . - 0 ID=Physo141347;Parent=Physo141347;rank=3 scaffold_97 . exon 129901 130469 . - . ID=Physo141347.3;Parent=Physo141347;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 130518 130593 . - 0 ID=Physo141347;Parent=Physo141347;rank=2 scaffold_97 . exon 130518 130593 . - . ID=Physo141347.2;Parent=Physo141347;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_97 . CDS 130641 130655 . - 0 ID=Physo141347;Parent=Physo141347;rank=1 scaffold_97 . exon 130641 130655 . - . ID=Physo141347.1;Parent=Physo141347;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 136955 137464 . - . ID=Physo141348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970036;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 136955 137464 . - . ID=Physo141348;Parent=Physo141348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 136955 137464 . - 0 ID=Physo141348;Parent=Physo141348;rank=1 scaffold_97 . exon 136955 137464 . - . ID=Physo141348.1;Parent=Physo141348;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 138902 139916 . + . ID=Physo141349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970037;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 138902 139916 . + . ID=Physo141349;Parent=Physo141349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 138902 139149 . + 0 ID=Physo141349;Parent=Physo141349;rank=1 scaffold_97 . exon 138902 139149 . + . ID=Physo141349.1;Parent=Physo141349;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . CDS 139244 139916 . + 0 ID=Physo141349;Parent=Physo141349;rank=2 scaffold_97 . exon 139244 139916 . + . ID=Physo141349.2;Parent=Physo141349;constitutive=1;ensembl_phase=2;rank=2 scaffold_97 . biological_region 141726 141728 0.999 - . logic_name=eponine scaffold_97 . biological_region 141859 141863 0.999 + . logic_name=eponine scaffold_97 . biological_region 143264 143266 0.999 - . logic_name=eponine scaffold_97 . repeat_region 143367 143390 . ? . description=trf scaffold_97 . repeat_region 143371 143390 . ? . description=dust scaffold_97 . biological_region 143513 143516 0.999 + . logic_name=eponine scaffold_97 . biological_region 143687 143690 0.999 - . logic_name=eponine scaffold_97 . repeat_region 143923 143944 . ? . description=trf scaffold_97 . biological_region 144043 144043 0.999 + . logic_name=eponine scaffold_97 . biological_region 144066 144068 0.999 - . logic_name=eponine scaffold_97 . biological_region 144088 144090 0.999 - . logic_name=eponine scaffold_97 . repeat_region 144211 144258 . ? . description=trf scaffold_97 . repeat_region 144211 144259 . ? . description=trf scaffold_97 . repeat_region 144214 144255 . ? . description=dust scaffold_97 . biological_region 146542 146548 0.999 - . logic_name=eponine scaffold_97 . biological_region 146599 146600 0.999 + . logic_name=eponine scaffold_97 . biological_region 146621 146622 0.999 + . logic_name=eponine scaffold_97 ensembl protein_coding_gene 140015 143730 . - . ID=Physo141350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970038;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 140015 143730 . - . ID=Physo141350;Parent=Physo141350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 140015 140388 . - 0 ID=Physo141350;Parent=Physo141350;rank=6 scaffold_97 . exon 140015 140388 . - . ID=Physo141350.6;Parent=Physo141350;constitutive=1;ensembl_phase=1;rank=6 scaffold_97 . CDS 140460 140526 . - 0 ID=Physo141350;Parent=Physo141350;rank=5 scaffold_97 . exon 140460 140526 . - . ID=Physo141350.5;Parent=Physo141350;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_97 . CDS 140600 140692 . - 0 ID=Physo141350;Parent=Physo141350;rank=4 scaffold_97 . exon 140600 140692 . - . ID=Physo141350.4;Parent=Physo141350;constitutive=1;rank=4 scaffold_97 . CDS 140770 142149 . - 0 ID=Physo141350;Parent=Physo141350;rank=3 scaffold_97 . exon 140770 142149 . - . ID=Physo141350.3;Parent=Physo141350;constitutive=1;rank=3 scaffold_97 . CDS 142255 142398 . - 0 ID=Physo141350;Parent=Physo141350;rank=2 scaffold_97 . exon 142255 142398 . - . ID=Physo141350.2;Parent=Physo141350;constitutive=1;rank=2 scaffold_97 . CDS 142474 143730 . - 0 ID=Physo141350;Parent=Physo141350;rank=1 scaffold_97 . exon 142474 143730 . - . ID=Physo141350.1;Parent=Physo141350;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 143900 145033 . + . ID=Physo141351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970039;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 143900 145033 . + . ID=Physo141351;Parent=Physo141351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 143900 144572 . + 0 ID=Physo141351;Parent=Physo141351;rank=1 scaffold_97 . exon 143900 144572 . + . ID=Physo141351.1;Parent=Physo141351;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 . CDS 144658 144792 . + 0 ID=Physo141351;Parent=Physo141351;rank=2 scaffold_97 . exon 144658 144792 . + . ID=Physo141351.2;Parent=Physo141351;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 144861 145033 . + 0 ID=Physo141351;Parent=Physo141351;rank=3 scaffold_97 . exon 144861 145033 . + . ID=Physo141351.3;Parent=Physo141351;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 ensembl protein_coding_gene 145602 148159 . - . ID=Physo141352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970040;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 145602 148159 . - . ID=Physo141352;Parent=Physo141352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 145602 145671 . - 0 ID=Physo141352;Parent=Physo141352;rank=6 scaffold_97 . exon 145602 145671 . - . ID=Physo141352.6;Parent=Physo141352;constitutive=1;ensembl_phase=2;rank=6 scaffold_97 . CDS 145896 146769 . - 0 ID=Physo141352;Parent=Physo141352;rank=5 scaffold_97 . exon 145896 146769 . - . ID=Physo141352.5;Parent=Physo141352;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_97 . CDS 146835 147343 . - 0 ID=Physo141352;Parent=Physo141352;rank=4 scaffold_97 . exon 146835 147343 . - . ID=Physo141352.4;Parent=Physo141352;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_97 . CDS 147414 147531 . - 0 ID=Physo141352;Parent=Physo141352;rank=3 scaffold_97 . exon 147414 147531 . - . ID=Physo141352.3;Parent=Physo141352;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_97 . CDS 147696 147952 . - 0 ID=Physo141352;Parent=Physo141352;rank=2 scaffold_97 . exon 147696 147952 . - . ID=Physo141352.2;Parent=Physo141352;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_97 . CDS 148092 148159 . - 0 ID=Physo141352;Parent=Physo141352;rank=1 scaffold_97 . exon 148092 148159 . - . ID=Physo141352.1;Parent=Physo141352;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . repeat_region 150999 151173 . - . description=Polinton-1_PI scaffold_97 . repeat_region 152302 152807 . + . description=Polinton-1_PI scaffold_97 . repeat_region 154861 158542 . + . description=Polinton-1_PI scaffold_97 . repeat_region 158511 159426 . + . description=Polinton-1_PI scaffold_97 . repeat_region 159427 159934 . ? . description=dust scaffold_97 . repeat_region 162079 162282 . ? . description=dust scaffold_97 . repeat_region 166971 166991 . ? . description=dust scaffold_97 . biological_region 168437 168439 0.999 + . logic_name=eponine scaffold_97 . repeat_region 168610 168656 . ? . description=trf scaffold_97 ensembl protein_coding_gene 168950 169820 . + . ID=Physo141353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970041;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 168950 169820 . + . ID=Physo141353;Parent=Physo141353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 168950 169564 . + 0 ID=Physo141353;Parent=Physo141353;rank=1 scaffold_97 . exon 168950 169564 . + . ID=Physo141353.1;Parent=Physo141353;constitutive=1;rank=1 scaffold_97 . CDS 169665 169820 . + 0 ID=Physo141353;Parent=Physo141353;rank=2 scaffold_97 . exon 169665 169820 . + . ID=Physo141353.2;Parent=Physo141353;constitutive=1;rank=2 scaffold_97 ensembl protein_coding_gene 170479 171901 . + . ID=Physo141354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970042;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 170479 171901 . + . ID=Physo141354;Parent=Physo141354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 170479 170621 . + 0 ID=Physo141354;Parent=Physo141354;rank=1 scaffold_97 . exon 170479 170621 . + . ID=Physo141354.1;Parent=Physo141354;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 . CDS 171186 171499 . + 0 ID=Physo141354;Parent=Physo141354;rank=2 scaffold_97 . exon 171186 171499 . + . ID=Physo141354.2;Parent=Physo141354;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_97 . CDS 171573 171901 . + 0 ID=Physo141354;Parent=Physo141354;rank=3 scaffold_97 . exon 171573 171901 . + . ID=Physo141354.3;Parent=Physo141354;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 ensembl protein_coding_gene 176865 177372 . + . ID=Physo141355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970043;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 176865 177372 . + . ID=Physo141355;Parent=Physo141355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 176865 177053 . + 0 ID=Physo141355;Parent=Physo141355;rank=1 scaffold_97 . exon 176865 177053 . + . ID=Physo141355.1;Parent=Physo141355;constitutive=1;rank=1 scaffold_97 . CDS 177117 177188 . + 0 ID=Physo141355;Parent=Physo141355;rank=2 scaffold_97 . exon 177117 177188 . + . ID=Physo141355.2;Parent=Physo141355;constitutive=1;rank=2 scaffold_97 . CDS 177253 177372 . + 0 ID=Physo141355;Parent=Physo141355;rank=3 scaffold_97 . exon 177253 177372 . + . ID=Physo141355.3;Parent=Physo141355;constitutive=1;rank=3 scaffold_97 . repeat_region 179398 179415 . ? . description=dust scaffold_97 . biological_region 180157 180162 0.999 + . logic_name=eponine scaffold_97 . biological_region 180294 180295 0.999 + . logic_name=eponine scaffold_97 . biological_region 180303 180307 0.999 - . logic_name=eponine scaffold_97 . biological_region 180326 180327 0.999 - . logic_name=eponine scaffold_97 . biological_region 180357 180362 0.999 + . logic_name=eponine scaffold_97 . biological_region 181418 181424 0.999 + . logic_name=eponine scaffold_97 . biological_region 181450 181452 0.999 - . logic_name=eponine scaffold_97 . biological_region 182832 182834 0.999 - . logic_name=eponine scaffold_97 . repeat_region 183189 183212 . ? . description=dust scaffold_97 . repeat_region 183189 183212 . ? . description=trf scaffold_97 . biological_region 184299 184303 0.999 - . logic_name=eponine scaffold_97 . repeat_region 185213 185252 . ? . description=trf scaffold_97 . repeat_region 185213 185255 . ? . description=dust scaffold_97 . repeat_region 185213 185255 . ? . description=trf scaffold_97 . repeat_region 185213 185255 . ? . description=trf scaffold_97 . repeat_region 185213 185255 . + . description=(CAG)n scaffold_97 . biological_region 185628 185630 0.999 + . logic_name=eponine scaffold_97 . biological_region 185706 185706 0.999 - . logic_name=eponine scaffold_97 . biological_region 185717 185718 0.999 + . logic_name=eponine scaffold_97 . biological_region 185805 185807 0.999 - . logic_name=eponine scaffold_97 . repeat_region 187422 187429 . ? . description=dust scaffold_97 . repeat_region 187564 187572 . ? . description=dust scaffold_97 ensembl protein_coding_gene 186378 187322 . + . ID=Physo121880;biotype=protein_coding;external_name=estExt_Genewise1.C_970035;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 186378 187322 . + . ID=Physo121880;Parent=Physo121880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . exon 186378 187322 . + . ID=Physo121880.1;Parent=Physo121880;constitutive=1;ensembl_phase=-1;rank=1 scaffold_97 . CDS 186393 187322 . + 0 ID=Physo121880;Parent=Physo121880;rank=1 scaffold_97 ensembl protein_coding_gene 180171 181877 . + . ID=Physo141356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970044;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 180171 181877 . + . ID=Physo141356;Parent=Physo141356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 180171 181877 . + 0 ID=Physo141356;Parent=Physo141356;rank=1 scaffold_97 . exon 180171 181877 . + . ID=Physo141356.1;Parent=Physo141356;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 184534 186111 . - . ID=Physo141357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970045;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 184534 186111 . - . ID=Physo141357;Parent=Physo141357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 184534 184543 . - 0 ID=Physo141357;Parent=Physo141357;rank=4 scaffold_97 . exon 184534 184543 . - . ID=Physo141357.4;Parent=Physo141357;constitutive=1;ensembl_phase=2;rank=4 scaffold_97 . CDS 184642 185012 . - 0 ID=Physo141357;Parent=Physo141357;rank=3 scaffold_97 . exon 184642 185012 . - . ID=Physo141357.3;Parent=Physo141357;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_97 . CDS 185096 185209 . - 0 ID=Physo141357;Parent=Physo141357;rank=2 scaffold_97 . exon 185096 185209 . - . ID=Physo141357.2;Parent=Physo141357;constitutive=1;rank=2 scaffold_97 . CDS 185302 186111 . - 0 ID=Physo141357;Parent=Physo141357;rank=1 scaffold_97 . exon 185302 186111 . - . ID=Physo141357.1;Parent=Physo141357;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 188699 190658 . - . ID=Physo141359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970047;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 188699 190658 . - . ID=Physo141359;Parent=Physo141359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . exon 188699 189778 . - . ID=Physo141359.3;Parent=Physo141359;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_97 . CDS 188796 189778 . - 0 ID=Physo141359;Parent=Physo141359;rank=3 scaffold_97 . CDS 189946 190459 . - 0 ID=Physo141359;Parent=Physo141359;rank=2 scaffold_97 . CDS 190527 190658 . - 0 ID=Physo141359;Parent=Physo141359;rank=1 scaffold_97 . exon 189946 190459 . - . ID=Physo141359.2;Parent=Physo141359;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_97 . exon 190527 190658 . - . ID=Physo141359.1;Parent=Physo141359;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 190890 191891 . - . ID=Physo141360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970048;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 190890 191891 . - . ID=Physo141360;Parent=Physo141360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 190890 191891 . - 0 ID=Physo141360;Parent=Physo141360;rank=1 scaffold_97 . exon 190890 191891 . - . ID=Physo141360.1;Parent=Physo141360;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 192189 193172 . - . ID=Physo141361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970049;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 192189 193172 . - . ID=Physo141361;Parent=Physo141361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 192189 193172 . - 0 ID=Physo141361;Parent=Physo141361;rank=1 scaffold_97 . exon 192189 193172 . - . ID=Physo141361.1;Parent=Physo141361;constitutive=1;rank=1 scaffold_97 . repeat_region 193302 202535 . ? . description=dust scaffold_97 . biological_region 203412 203414 0.999 + . logic_name=eponine scaffold_97 . repeat_region 207133 207141 . ? . description=dust scaffold_97 ensembl protein_coding_gene 208468 210913 . - . ID=Physo141362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970050;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 208468 210913 . - . ID=Physo141362;Parent=Physo141362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 208468 208706 . - 0 ID=Physo141362;Parent=Physo141362;rank=4 scaffold_97 . exon 208468 208706 . - . ID=Physo141362.4;Parent=Physo141362;constitutive=1;ensembl_phase=1;rank=4 scaffold_97 . CDS 209143 209416 . - 0 ID=Physo141362;Parent=Physo141362;rank=3 scaffold_97 . exon 209143 209416 . - . ID=Physo141362.3;Parent=Physo141362;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_97 . CDS 209561 209606 . - 0 ID=Physo141362;Parent=Physo141362;rank=2 scaffold_97 . CDS 210049 210620 . - 0 ID=Physo141362;Parent=Physo141362;rank=1 scaffold_97 ensembl protein_coding_gene 218297 219289 . + . ID=Physo109382;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_970005;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 218297 219289 . + . ID=Physo109382;Parent=Physo109382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 218297 219289 . + 0 ID=Physo109382;Parent=Physo109382;rank=1 scaffold_97 . exon 218297 219289 . + . ID=Physo109382.1;Parent=Physo109382;constitutive=1;rank=1 scaffold_97 . exon 209561 209606 . - . ID=Physo141362.2;Parent=Physo141362;constitutive=1;ensembl_phase=2;rank=2 scaffold_97 . exon 210049 210913 . - . ID=Physo141362.1;Parent=Physo141362;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_97 ensembl protein_coding_gene 211047 213951 . + . ID=Physo141363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970051;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 211047 213951 . + . ID=Physo141363;Parent=Physo141363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 211047 211158 . + 0 ID=Physo141363;Parent=Physo141363;rank=1 scaffold_97 . exon 211047 211158 . + . ID=Physo141363.1;Parent=Physo141363;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 . CDS 211232 211394 . + 0 ID=Physo141363;Parent=Physo141363;rank=2 scaffold_97 . exon 211232 211394 . + . ID=Physo141363.2;Parent=Physo141363;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_97 . CDS 211449 213951 . + 0 ID=Physo141363;Parent=Physo141363;rank=3 scaffold_97 . exon 211449 213951 . + . ID=Physo141363.3;Parent=Physo141363;constitutive=1;ensembl_phase=2;rank=3 scaffold_97 ensembl protein_coding_gene 214328 216070 . + . ID=Physo141364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970052;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 214328 216070 . + . ID=Physo141364;Parent=Physo141364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 214328 215962 . + 0 ID=Physo141364;Parent=Physo141364;rank=1 scaffold_97 . exon 214328 216070 . + . ID=Physo141364.1;Parent=Physo141364;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_97 ensembl protein_coding_gene 216438 218114 . + . ID=Physo141365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970053;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 216438 218114 . + . ID=Physo141365;Parent=Physo141365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 216438 218114 . + 0 ID=Physo141365;Parent=Physo141365;rank=1 scaffold_97 . exon 216438 218114 . + . ID=Physo141365.1;Parent=Physo141365;constitutive=1;rank=1 scaffold_97 . biological_region 219425 219429 0.999 + . logic_name=eponine scaffold_97 . biological_region 219519 219523 0.999 + . logic_name=eponine scaffold_97 . biological_region 219540 219547 0.999 - . logic_name=eponine scaffold_97 . biological_region 219564 219571 0.999 - . logic_name=eponine scaffold_97 . biological_region 219625 219626 0.999 + . logic_name=eponine scaffold_97 . biological_region 221756 221759 0.999 - . logic_name=eponine scaffold_97 . biological_region 221922 221923 0.999 + . logic_name=eponine scaffold_97 . biological_region 223055 223057 0.999 - . logic_name=eponine scaffold_97 . biological_region 223359 223365 0.999 + . logic_name=eponine scaffold_97 . biological_region 223510 223515 0.999 - . logic_name=eponine scaffold_97 . biological_region 223915 223916 0.999 - . logic_name=eponine scaffold_97 . biological_region 223937 223940 0.999 - . logic_name=eponine scaffold_97 . biological_region 225103 225106 0.999 - . logic_name=eponine scaffold_97 . biological_region 228179 228183 0.999 + . logic_name=eponine scaffold_97 . biological_region 229122 229124 0.999 - . logic_name=eponine scaffold_97 . biological_region 229179 229184 0.999 + . logic_name=eponine scaffold_97 ensembl protein_coding_gene 221172 222169 . - . ID=Physo109383;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_970006;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 221172 222169 . - . ID=Physo109383;Parent=Physo109383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 221172 221369 . - 0 ID=Physo109383;Parent=Physo109383;rank=2 scaffold_97 . exon 221172 221369 . - . ID=Physo109383.2;Parent=Physo109383;constitutive=1;rank=2 scaffold_97 . CDS 221447 222169 . - 0 ID=Physo109383;Parent=Physo109383;rank=1 scaffold_97 . exon 221447 222169 . - . ID=Physo109383.1;Parent=Physo109383;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 223325 224698 . + . ID=Physo121912;biotype=protein_coding;external_name=estExt_Genewise1.C_970067;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 223325 224698 . + . ID=Physo121912;Parent=Physo121912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . exon 223325 224698 . + . ID=Physo121912.1;Parent=Physo121912;constitutive=1;ensembl_phase=-1;rank=1 scaffold_97 . CDS 223337 224698 . + 0 ID=Physo121912;Parent=Physo121912;rank=1 scaffold_97 ensembl protein_coding_gene 219468 221063 . + . ID=Physo141367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970055;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 219468 221063 . + . ID=Physo141367;Parent=Physo141367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 219468 221063 . + 0 ID=Physo141367;Parent=Physo141367;rank=1 scaffold_97 . exon 219468 221063 . + . ID=Physo141367.1;Parent=Physo141367;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 227026 230489 . - . ID=Physo141370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970058;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 227026 230489 . - . ID=Physo141370;Parent=Physo141370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 227026 230120 . - 0 ID=Physo141370;Parent=Physo141370;rank=2 scaffold_97 . exon 227026 230120 . - . ID=Physo141370.2;Parent=Physo141370;constitutive=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 230237 230489 . - 0 ID=Physo141370;Parent=Physo141370;rank=1 scaffold_97 . repeat_region 231503 231510 . ? . description=dust scaffold_97 . repeat_region 233823 233832 . ? . description=dust scaffold_97 . exon 230237 230489 . - . ID=Physo141370.1;Parent=Physo141370;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 230809 231550 . - . ID=Physo141371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970059;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 230809 231550 . - . ID=Physo141371;Parent=Physo141371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 230809 231034 . - 0 ID=Physo141371;Parent=Physo141371;rank=3 scaffold_97 . exon 230809 231034 . - . ID=Physo141371.3;Parent=Physo141371;constitutive=1;ensembl_phase=2;rank=3 scaffold_97 . CDS 231166 231294 . - 0 ID=Physo141371;Parent=Physo141371;rank=2 scaffold_97 . exon 231166 231294 . - . ID=Physo141371.2;Parent=Physo141371;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_97 . CDS 231516 231550 . - 0 ID=Physo141371;Parent=Physo141371;rank=1 scaffold_97 . exon 231516 231550 . - . ID=Physo141371.1;Parent=Physo141371;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 ensembl protein_coding_gene 231722 233984 . - . ID=Physo141372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970060;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 231722 233984 . - . ID=Physo141372;Parent=Physo141372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 231722 231789 . - 0 ID=Physo141372;Parent=Physo141372;rank=6 scaffold_97 . exon 231722 231789 . - . ID=Physo141372.6;Parent=Physo141372;constitutive=1;ensembl_phase=1;rank=6 scaffold_97 . CDS 231870 232269 . - 0 ID=Physo141372;Parent=Physo141372;rank=5 scaffold_97 . exon 231870 232269 . - . ID=Physo141372.5;Parent=Physo141372;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_97 . CDS 232352 233371 . - 0 ID=Physo141372;Parent=Physo141372;rank=4 scaffold_97 . exon 232352 233371 . - . ID=Physo141372.4;Parent=Physo141372;constitutive=1;rank=4 scaffold_97 . CDS 233445 233536 . - 0 ID=Physo141372;Parent=Physo141372;rank=3 scaffold_97 . exon 233445 233536 . - . ID=Physo141372.3;Parent=Physo141372;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 233611 233784 . - 0 ID=Physo141372;Parent=Physo141372;rank=2 scaffold_97 . exon 233611 233784 . - . ID=Physo141372.2;Parent=Physo141372;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 233864 233984 . - 0 ID=Physo141372;Parent=Physo141372;rank=1 scaffold_97 . exon 233864 233984 . - . ID=Physo141372.1;Parent=Physo141372;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 234742 236154 . + . ID=Physo141373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970061;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 234742 236154 . + . ID=Physo141373;Parent=Physo141373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 234742 234882 . + 0 ID=Physo141373;Parent=Physo141373;rank=1 scaffold_97 . exon 234742 234882 . + . ID=Physo141373.1;Parent=Physo141373;constitutive=1;rank=1 scaffold_97 . CDS 234947 235039 . + 0 ID=Physo141373;Parent=Physo141373;rank=2 scaffold_97 . exon 234947 235039 . + . ID=Physo141373.2;Parent=Physo141373;constitutive=1;rank=2 scaffold_97 . CDS 235118 235425 . + 0 ID=Physo141373;Parent=Physo141373;rank=3 scaffold_97 . exon 235118 235425 . + . ID=Physo141373.3;Parent=Physo141373;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_97 . CDS 235507 235730 . + 0 ID=Physo141373;Parent=Physo141373;rank=4 scaffold_97 . exon 235507 235730 . + . ID=Physo141373.4;Parent=Physo141373;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_97 . CDS 236021 236154 . + 0 ID=Physo141373;Parent=Physo141373;rank=5 scaffold_97 . exon 236021 236154 . + . ID=Physo141373.5;Parent=Physo141373;constitutive=1;ensembl_phase=1;rank=5 scaffold_97 ensembl protein_coding_gene 236139 237692 . - . ID=Physo141374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970062;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 236139 237692 . - . ID=Physo141374;Parent=Physo141374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . exon 236139 237692 . - . ID=Physo141374.1;Parent=Physo141374;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_97 . CDS 236238 237692 . - 0 ID=Physo141374;Parent=Physo141374;rank=1 scaffold_97 . biological_region 242890 242890 0.999 - . logic_name=eponine scaffold_97 . repeat_region 244627 244693 . ? . description=trf scaffold_97 . biological_region 244910 244913 0.999 + . logic_name=eponine scaffold_97 . biological_region 245461 245464 0.999 + . logic_name=eponine scaffold_97 . biological_region 245543 245549 0.999 - . logic_name=eponine scaffold_97 . biological_region 245556 245557 0.999 + . logic_name=eponine scaffold_97 . biological_region 245625 245630 0.999 - . logic_name=eponine scaffold_97 . biological_region 246260 246267 0.999 + . logic_name=eponine scaffold_97 . biological_region 246308 246313 0.999 + . logic_name=eponine scaffold_97 . biological_region 246748 246751 0.999 - . logic_name=eponine scaffold_97 . biological_region 246756 246764 0.999 + . logic_name=eponine scaffold_97 . biological_region 246769 246773 0.999 - . logic_name=eponine scaffold_97 . biological_region 246803 246804 0.999 + . logic_name=eponine scaffold_97 . biological_region 246820 246827 0.999 - . logic_name=eponine scaffold_97 . biological_region 246842 246845 0.999 - . logic_name=eponine scaffold_97 . biological_region 246859 246862 0.999 + . logic_name=eponine scaffold_97 . biological_region 246867 246872 0.999 - . logic_name=eponine scaffold_97 . biological_region 246897 246903 0.999 + . logic_name=eponine scaffold_97 . biological_region 246915 246917 0.999 - . logic_name=eponine scaffold_97 . biological_region 247791 247793 0.999 - . logic_name=eponine scaffold_97 . repeat_region 248332 248351 . ? . description=trf scaffold_97 ensembl protein_coding_gene 242574 244036 . - . ID=Physo141375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970063;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 242574 244036 . - . ID=Physo141375;Parent=Physo141375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 242574 242638 . - 0 ID=Physo141375;Parent=Physo141375;rank=4 scaffold_97 . exon 242574 242638 . - . ID=Physo141375.4;Parent=Physo141375;constitutive=1;ensembl_phase=1;rank=4 scaffold_97 . CDS 242661 242814 . - 0 ID=Physo141375;Parent=Physo141375;rank=3 scaffold_97 . exon 242661 242814 . - . ID=Physo141375.3;Parent=Physo141375;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_97 . CDS 242835 243576 . - 0 ID=Physo141375;Parent=Physo141375;rank=2 scaffold_97 . exon 242835 243576 . - . ID=Physo141375.2;Parent=Physo141375;constitutive=1;ensembl_phase=2;rank=2 scaffold_97 . CDS 243642 244036 . - 0 ID=Physo141375;Parent=Physo141375;rank=1 scaffold_97 . exon 243642 244036 . - . ID=Physo141375.1;Parent=Physo141375;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 ensembl protein_coding_gene 244728 245066 . + . ID=Physo141376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970064;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 244728 245066 . + . ID=Physo141376;Parent=Physo141376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 244728 245066 . + 0 ID=Physo141376;Parent=Physo141376;rank=1 scaffold_97 . exon 244728 245066 . + . ID=Physo141376.1;Parent=Physo141376;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 245231 247974 . - . ID=Physo141377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970065;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 245231 247974 . - . ID=Physo141377;Parent=Physo141377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 245231 246486 . - 0 ID=Physo141377;Parent=Physo141377;rank=5 scaffold_97 . exon 245231 246486 . - . ID=Physo141377.5;Parent=Physo141377;constitutive=1;ensembl_phase=1;rank=5 scaffold_97 . CDS 246577 247047 . - 0 ID=Physo141377;Parent=Physo141377;rank=4 scaffold_97 . exon 246577 247047 . - . ID=Physo141377.4;Parent=Physo141377;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_97 . CDS 247268 247516 . - 0 ID=Physo141377;Parent=Physo141377;rank=3 scaffold_97 . exon 247268 247516 . - . ID=Physo141377.3;Parent=Physo141377;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 247589 247891 . - 0 ID=Physo141377;Parent=Physo141377;rank=2 scaffold_97 . exon 247589 247891 . - . ID=Physo141377.2;Parent=Physo141377;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 247926 247974 . - 0 ID=Physo141377;Parent=Physo141377;rank=1 scaffold_97 . exon 247926 247974 . - . ID=Physo141377.1;Parent=Physo141377;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 254989 256442 . - . ID=Physo109384;biotype=protein_coding;description=Translation elongation factor 1-alpha [Source:UniProtKB/TrEMBL%3BAcc:A7XGY8];external_name=EF1A;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 254989 256442 . - . ID=Physo109384;Parent=Physo109384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . exon 254989 256442 . - . ID=Physo109384.1;Parent=Physo109384;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_97 . CDS 255107 256438 . - 0 ID=Physo109384;Parent=Physo109384;rank=1 scaffold_97 ensembl protein_coding_gene 250505 251419 . - . ID=Physo141378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970066;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 250505 251419 . - . ID=Physo141378;Parent=Physo141378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 250505 250549 . - 0 ID=Physo141378;Parent=Physo141378;rank=3 scaffold_97 . exon 250505 250549 . - . ID=Physo141378.3;Parent=Physo141378;constitutive=1;rank=3 scaffold_97 . CDS 250626 250991 . - 0 ID=Physo141378;Parent=Physo141378;rank=2 scaffold_97 . exon 250626 250991 . - . ID=Physo141378.2;Parent=Physo141378;constitutive=1;rank=2 scaffold_97 . CDS 251030 251419 . - 0 ID=Physo141378;Parent=Physo141378;rank=1 scaffold_97 . exon 251030 251419 . - . ID=Physo141378.1;Parent=Physo141378;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 252019 253308 . + . ID=Physo141379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970067;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 252019 253308 . + . ID=Physo141379;Parent=Physo141379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 252019 253308 . + 0 ID=Physo141379;Parent=Physo141379;rank=1 scaffold_97 . exon 252019 253308 . + . ID=Physo141379.1;Parent=Physo141379;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 253492 254781 . - . ID=Physo141380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970068;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 253492 254781 . - . ID=Physo141380;Parent=Physo141380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 253492 254781 . - 0 ID=Physo141380;Parent=Physo141380;rank=1 scaffold_97 . exon 253492 254781 . - . ID=Physo141380.1;Parent=Physo141380;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 257167 258201 . + . ID=Physo141382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970070;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 257167 258201 . + . ID=Physo141382;Parent=Physo141382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 257167 258201 . + 0 ID=Physo141382;Parent=Physo141382;rank=1 scaffold_97 . exon 257167 258201 . + . ID=Physo141382.1;Parent=Physo141382;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 258548 260011 . - . ID=Physo141383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970071;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 258548 260011 . - . ID=Physo141383;Parent=Physo141383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 258548 258754 . - 0 ID=Physo141383;Parent=Physo141383;rank=4 scaffold_97 . exon 258548 258754 . - . ID=Physo141383.4;Parent=Physo141383;constitutive=1;rank=4 scaffold_97 . CDS 258830 259187 . - 0 ID=Physo141383;Parent=Physo141383;rank=3 scaffold_97 . exon 258830 259187 . - . ID=Physo141383.3;Parent=Physo141383;constitutive=1;ensembl_phase=2;rank=3 scaffold_97 . CDS 259260 259307 . - 0 ID=Physo141383;Parent=Physo141383;rank=2 scaffold_97 . CDS 259392 260011 . - 0 ID=Physo141383;Parent=Physo141383;rank=1 scaffold_97 . biological_region 259733 259734 0.999 + . logic_name=eponine scaffold_97 . biological_region 259752 259758 0.999 + . logic_name=eponine scaffold_97 . biological_region 259777 259783 0.999 + . logic_name=eponine scaffold_97 . biological_region 260043 260044 0.999 - . logic_name=eponine scaffold_97 . repeat_region 261033 262888 . ? . description=dust scaffold_97 . biological_region 263748 263752 0.999 + . logic_name=eponine scaffold_97 . repeat_region 267076 267086 . ? . description=dust scaffold_97 . biological_region 268485 268486 0.999 + . logic_name=eponine scaffold_97 . biological_region 268558 268563 0.999 + . logic_name=eponine scaffold_97 . biological_region 268613 268616 0.999 + . logic_name=eponine scaffold_97 . biological_region 268702 268705 0.999 - . logic_name=eponine scaffold_97 . exon 259260 259307 . - . ID=Physo141383.2;Parent=Physo141383;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_97 . exon 259392 260011 . - . ID=Physo141383.1;Parent=Physo141383;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 ensembl protein_coding_gene 268007 270383 . - . ID=Physo141384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970072;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 268007 270383 . - . ID=Physo141384;Parent=Physo141384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 268007 270148 . - 0 ID=Physo141384;Parent=Physo141384;rank=2 scaffold_97 . exon 268007 270148 . - . ID=Physo141384.2;Parent=Physo141384;constitutive=1;rank=2 scaffold_97 . CDS 270180 270383 . - 0 ID=Physo141384;Parent=Physo141384;rank=1 scaffold_97 . repeat_region 270387 270431 . ? . description=trf scaffold_97 . repeat_region 276328 276376 . ? . description=trf scaffold_97 . repeat_region 276332 276368 . ? . description=trf scaffold_97 . exon 270180 270383 . - . ID=Physo141384.1;Parent=Physo141384;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 276376 278792 . + . ID=Physo141385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970073;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 276376 278792 . + . ID=Physo141385;Parent=Physo141385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 276376 276579 . + 0 ID=Physo141385;Parent=Physo141385;rank=1 scaffold_97 . exon 276376 276579 . + . ID=Physo141385.1;Parent=Physo141385;constitutive=1;rank=1 scaffold_97 . CDS 276611 277586 . + 0 ID=Physo141385;Parent=Physo141385;rank=2 scaffold_97 . exon 276611 277586 . + . ID=Physo141385.2;Parent=Physo141385;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_97 . CDS 277680 277714 . + 0 ID=Physo141385;Parent=Physo141385;rank=3 scaffold_97 . exon 277680 277714 . + . ID=Physo141385.3;Parent=Physo141385;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 277749 278792 . + 0 ID=Physo141385;Parent=Physo141385;rank=4 scaffold_97 . exon 277749 278792 . + . ID=Physo141385.4;Parent=Physo141385;constitutive=1;rank=4 scaffold_97 . biological_region 279504 279505 0.999 - . logic_name=eponine scaffold_97 . biological_region 279557 279563 0.999 + . logic_name=eponine scaffold_97 . biological_region 279639 279642 0.999 - . logic_name=eponine scaffold_97 . biological_region 280159 280161 0.999 - . logic_name=eponine scaffold_97 . biological_region 280454 280454 0.999 - . logic_name=eponine scaffold_97 . repeat_region 289744 289751 . ? . description=dust scaffold_97 . repeat_region 291089 291137 . ? . description=trf scaffold_97 . repeat_region 291244 291285 . ? . description=trf scaffold_97 . repeat_region 296974 297025 . ? . description=trf scaffold_97 ensembl protein_coding_gene 292549 293193 . - . ID=Physo141386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970074;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 292549 293193 . - . ID=Physo141386;Parent=Physo141386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 292549 292680 . - 0 ID=Physo141386;Parent=Physo141386;rank=3 scaffold_97 . exon 292549 292680 . - . ID=Physo141386.3;Parent=Physo141386;constitutive=1;rank=3 scaffold_97 . CDS 292704 292929 . - 0 ID=Physo141386;Parent=Physo141386;rank=2 scaffold_97 . exon 292704 292929 . - . ID=Physo141386.2;Parent=Physo141386;constitutive=1;ensembl_phase=2;rank=2 scaffold_97 . CDS 293006 293193 . - 0 ID=Physo141386;Parent=Physo141386;rank=1 scaffold_97 . exon 293006 293193 . - . ID=Physo141386.1;Parent=Physo141386;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_97 ensembl protein_coding_gene 294366 295270 . - . ID=Physo141387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970075;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 294366 295270 . - . ID=Physo141387;Parent=Physo141387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 294366 294597 . - 0 ID=Physo141387;Parent=Physo141387;rank=6 scaffold_97 . exon 294366 294597 . - . ID=Physo141387.6;Parent=Physo141387;constitutive=1;ensembl_phase=2;rank=6 scaffold_97 . CDS 294778 294806 . - 0 ID=Physo141387;Parent=Physo141387;rank=5 scaffold_97 . exon 294778 294806 . - . ID=Physo141387.5;Parent=Physo141387;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_97 . CDS 294829 294852 . - 0 ID=Physo141387;Parent=Physo141387;rank=4 scaffold_97 . exon 294829 294852 . - . ID=Physo141387.4;Parent=Physo141387;constitutive=1;rank=4 scaffold_97 . CDS 294914 294984 . - 0 ID=Physo141387;Parent=Physo141387;rank=3 scaffold_97 . exon 294914 294984 . - . ID=Physo141387.3;Parent=Physo141387;constitutive=1;ensembl_phase=1;rank=3 scaffold_97 . CDS 295039 295125 . - 0 ID=Physo141387;Parent=Physo141387;rank=2 scaffold_97 . exon 295039 295125 . - . ID=Physo141387.2;Parent=Physo141387;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_97 . CDS 295186 295270 . - 0 ID=Physo141387;Parent=Physo141387;rank=1 scaffold_97 . exon 295186 295270 . - . ID=Physo141387.1;Parent=Physo141387;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_97 ensembl protein_coding_gene 298348 299514 . - . ID=Physo141388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970076;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 298348 299514 . - . ID=Physo141388;Parent=Physo141388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 298348 298491 . - 0 ID=Physo141388;Parent=Physo141388;rank=4 scaffold_97 . exon 298348 298491 . - . ID=Physo141388.4;Parent=Physo141388;constitutive=1;rank=4 scaffold_97 . CDS 298567 298656 . - 0 ID=Physo141388;Parent=Physo141388;rank=3 scaffold_97 . exon 298567 298656 . - . ID=Physo141388.3;Parent=Physo141388;constitutive=1;rank=3 scaffold_97 . CDS 298713 298910 . - 0 ID=Physo141388;Parent=Physo141388;rank=2 scaffold_97 . exon 298713 298910 . - . ID=Physo141388.2;Parent=Physo141388;constitutive=1;rank=2 scaffold_97 . CDS 299179 299514 . - 0 ID=Physo141388;Parent=Physo141388;rank=1 scaffold_97 . exon 299179 299514 . - . ID=Physo141388.1;Parent=Physo141388;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 301650 302473 . + . ID=Physo141389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970077;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 301650 302473 . + . ID=Physo141389;Parent=Physo141389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 301650 302345 . + 0 ID=Physo141389;Parent=Physo141389;rank=1 scaffold_97 . exon 301650 302345 . + . ID=Physo141389.1;Parent=Physo141389;constitutive=1;rank=1 scaffold_97 . CDS 302447 302473 . + 0 ID=Physo141389;Parent=Physo141389;rank=2 scaffold_97 . exon 302447 302473 . + . ID=Physo141389.2;Parent=Physo141389;constitutive=1;rank=2 scaffold_97 ensembl protein_coding_gene 303747 304254 . - . ID=Physo141390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970078;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 303747 304254 . - . ID=Physo141390;Parent=Physo141390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 303747 303866 . - 0 ID=Physo141390;Parent=Physo141390;rank=3 scaffold_97 . exon 303747 303866 . - . ID=Physo141390.3;Parent=Physo141390;constitutive=1;rank=3 scaffold_97 . CDS 303931 304002 . - 0 ID=Physo141390;Parent=Physo141390;rank=2 scaffold_97 . exon 303931 304002 . - . ID=Physo141390.2;Parent=Physo141390;constitutive=1;rank=2 scaffold_97 . CDS 304066 304254 . - 0 ID=Physo141390;Parent=Physo141390;rank=1 scaffold_97 . exon 304066 304254 . - . ID=Physo141390.1;Parent=Physo141390;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 305889 306396 . - . ID=Physo141391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970079;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 305889 306396 . - . ID=Physo141391;Parent=Physo141391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 305889 306008 . - 0 ID=Physo141391;Parent=Physo141391;rank=3 scaffold_97 . exon 305889 306008 . - . ID=Physo141391.3;Parent=Physo141391;constitutive=1;rank=3 scaffold_97 . CDS 306073 306144 . - 0 ID=Physo141391;Parent=Physo141391;rank=2 scaffold_97 . exon 306073 306144 . - . ID=Physo141391.2;Parent=Physo141391;constitutive=1;rank=2 scaffold_97 . CDS 306208 306396 . - 0 ID=Physo141391;Parent=Physo141391;rank=1 scaffold_97 . exon 306208 306396 . - . ID=Physo141391.1;Parent=Physo141391;constitutive=1;rank=1 scaffold_97 ensembl protein_coding_gene 308359 311075 . - . ID=Physo141392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_970080;logic_name=jgi_physo1_1 scaffold_97 ensembl transcript 308359 311075 . - . ID=Physo141392;Parent=Physo141392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_97 . CDS 308359 308812 . - 0 ID=Physo141392;Parent=Physo141392;rank=4 scaffold_97 . exon 308359 308812 . - . ID=Physo141392.4;Parent=Physo141392;constitutive=1;ensembl_phase=2;rank=4 scaffold_97 . CDS 309377 309527 . - 0 ID=Physo141392;Parent=Physo141392;rank=3 scaffold_97 . CDS 310186 310333 . - 0 ID=Physo141392;Parent=Physo141392;rank=2 scaffold_97 . CDS 310434 311075 . - 0 ID=Physo141392;Parent=Physo141392;rank=1 scaffold_97 . biological_region 309213 309221 0.999 + . logic_name=eponine scaffold_97 . biological_region 309266 309269 0.999 - . logic_name=eponine scaffold_97 . repeat_region 311400 311446 . ? . description=trf scaffold_97 . biological_region 311618 311620 0.999 - . logic_name=eponine scaffold_97 . repeat_region 311751 311788 . ? . description=trf scaffold_97 . repeat_region 313055 313075 . ? . description=dust scaffold_97 . repeat_region 313820 318921 . - . description=Polinton-1_PI scaffold_97 . exon 309377 309527 . - . ID=Physo141392.3;Parent=Physo141392;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_97 . exon 310186 310333 . - . ID=Physo141392.2;Parent=Physo141392;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_97 . exon 310434 311075 . - . ID=Physo141392.1;Parent=Physo141392;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_96 1 322967 scaffold_96 . biological_region 6090 6095 0.999 - . logic_name=eponine scaffold_96 . repeat_region 6675 6698 . ? . description=dust scaffold_96 . biological_region 7004 7004 0.999 + . logic_name=eponine scaffold_96 . repeat_region 7772 7808 . ? . description=dust scaffold_96 ensembl protein_coding_gene 3452 6233 . + . ID=Physo141237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960001;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 3452 6233 . + . ID=Physo141237;Parent=Physo141237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 3452 3560 . + 0 ID=Physo141237;Parent=Physo141237;rank=1 scaffold_96 . exon 3452 3560 . + . ID=Physo141237.1;Parent=Physo141237;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 3584 3702 . + 0 ID=Physo141237;Parent=Physo141237;rank=2 scaffold_96 . exon 3584 3702 . + . ID=Physo141237.2;Parent=Physo141237;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 3778 3939 . + 0 ID=Physo141237;Parent=Physo141237;rank=3 scaffold_96 . exon 3778 3939 . + . ID=Physo141237.3;Parent=Physo141237;constitutive=1;rank=3 scaffold_96 . CDS 4013 4081 . + 0 ID=Physo141237;Parent=Physo141237;rank=4 scaffold_96 . exon 4013 4081 . + . ID=Physo141237.4;Parent=Physo141237;constitutive=1;rank=4 scaffold_96 . CDS 4164 4253 . + 0 ID=Physo141237;Parent=Physo141237;rank=5 scaffold_96 . exon 4164 4253 . + . ID=Physo141237.5;Parent=Physo141237;constitutive=1;rank=5 scaffold_96 . CDS 4333 4429 . + 0 ID=Physo141237;Parent=Physo141237;rank=6 scaffold_96 . exon 4333 4429 . + . ID=Physo141237.6;Parent=Physo141237;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_96 . CDS 4495 4648 . + 0 ID=Physo141237;Parent=Physo141237;rank=7 scaffold_96 . exon 4495 4648 . + . ID=Physo141237.7;Parent=Physo141237;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_96 . CDS 4720 4909 . + 0 ID=Physo141237;Parent=Physo141237;rank=8 scaffold_96 . exon 4720 4909 . + . ID=Physo141237.8;Parent=Physo141237;constitutive=1;ensembl_phase=2;rank=8 scaffold_96 . CDS 4982 5110 . + 0 ID=Physo141237;Parent=Physo141237;rank=9 scaffold_96 . exon 4982 5110 . + . ID=Physo141237.9;Parent=Physo141237;constitutive=1;rank=9 scaffold_96 . CDS 5194 5582 . + 0 ID=Physo141237;Parent=Physo141237;rank=10 scaffold_96 . exon 5194 5582 . + . ID=Physo141237.10;Parent=Physo141237;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_96 . CDS 5650 5802 . + 0 ID=Physo141237;Parent=Physo141237;rank=11 scaffold_96 . exon 5650 5802 . + . ID=Physo141237.11;Parent=Physo141237;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_96 . CDS 5879 6233 . + 0 ID=Physo141237;Parent=Physo141237;rank=12 scaffold_96 . exon 5879 6233 . + . ID=Physo141237.12;Parent=Physo141237;constitutive=1;ensembl_phase=2;rank=12 scaffold_96 ensembl protein_coding_gene 6325 7158 . - . ID=Physo141238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960002;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 6325 7158 . - . ID=Physo141238;Parent=Physo141238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 6325 6668 . - . ID=Physo141238.2;Parent=Physo141238;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_96 . CDS 6504 6668 . - 0 ID=Physo141238;Parent=Physo141238;rank=2 scaffold_96 . CDS 6759 7127 . - 0 ID=Physo141238;Parent=Physo141238;rank=1 scaffold_96 . exon 6759 7158 . - . ID=Physo141238.1;Parent=Physo141238;constitutive=1;ensembl_phase=-1;rank=1 scaffold_96 ensembl protein_coding_gene 7499 8699 . - . ID=Physo141239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960003;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 7499 8699 . - . ID=Physo141239;Parent=Physo141239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 7499 7768 . - 0 ID=Physo141239;Parent=Physo141239;rank=4 scaffold_96 . exon 7499 7768 . - . ID=Physo141239.4;Parent=Physo141239;constitutive=1;rank=4 scaffold_96 . CDS 7904 8171 . - 0 ID=Physo141239;Parent=Physo141239;rank=3 scaffold_96 . exon 7904 8171 . - . ID=Physo141239.3;Parent=Physo141239;constitutive=1;ensembl_phase=2;rank=3 scaffold_96 . CDS 8217 8566 . - 0 ID=Physo141239;Parent=Physo141239;rank=2 scaffold_96 . exon 8217 8566 . - . ID=Physo141239.2;Parent=Physo141239;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_96 . CDS 8652 8699 . - 0 ID=Physo141239;Parent=Physo141239;rank=1 scaffold_96 . exon 8652 8699 . - . ID=Physo141239.1;Parent=Physo141239;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 9063 10399 . + . ID=Physo141240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960004;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 9063 10399 . + . ID=Physo141240;Parent=Physo141240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 9063 9248 . + 0 ID=Physo141240;Parent=Physo141240;rank=1 scaffold_96 . exon 9063 9248 . + . ID=Physo141240.1;Parent=Physo141240;constitutive=1;rank=1 scaffold_96 . CDS 9307 9331 . + 0 ID=Physo141240;Parent=Physo141240;rank=2 scaffold_96 . exon 9307 9331 . + . ID=Physo141240.2;Parent=Physo141240;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_96 . CDS 9356 9397 . + 0 ID=Physo141240;Parent=Physo141240;rank=3 scaffold_96 . exon 9356 9397 . + . ID=Physo141240.3;Parent=Physo141240;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_96 . CDS 9423 9667 . + 0 ID=Physo141240;Parent=Physo141240;rank=4 scaffold_96 . exon 9423 9667 . + . ID=Physo141240.4;Parent=Physo141240;constitutive=1;ensembl_phase=1;rank=4 scaffold_96 . CDS 9730 10254 . + 0 ID=Physo141240;Parent=Physo141240;rank=5 scaffold_96 . exon 9730 10254 . + . ID=Physo141240.5;Parent=Physo141240;constitutive=1;rank=5 scaffold_96 . CDS 10328 10399 . + 0 ID=Physo141240;Parent=Physo141240;rank=6 scaffold_96 . repeat_region 16612 16692 . ? . description=trf scaffold_96 . exon 10328 10399 . + . ID=Physo141240.6;Parent=Physo141240;constitutive=1;rank=6 scaffold_96 ensembl protein_coding_gene 10497 16241 . - . ID=Physo141241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960005;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 10497 16241 . - . ID=Physo141241;Parent=Physo141241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 10497 12122 . - 0 ID=Physo141241;Parent=Physo141241;rank=11 scaffold_96 . exon 10497 12122 . - . ID=Physo141241.11;Parent=Physo141241;constitutive=1;rank=11 scaffold_96 . CDS 12631 13122 . - 0 ID=Physo141241;Parent=Physo141241;rank=10 scaffold_96 . exon 12631 13122 . - . ID=Physo141241.10;Parent=Physo141241;constitutive=1;rank=10 scaffold_96 . CDS 13158 13369 . - 0 ID=Physo141241;Parent=Physo141241;rank=9 scaffold_96 . exon 13158 13369 . - . ID=Physo141241.9;Parent=Physo141241;constitutive=1;ensembl_phase=1;rank=9 scaffold_96 . CDS 13543 13870 . - 0 ID=Physo141241;Parent=Physo141241;rank=8 scaffold_96 . exon 13543 13870 . - . ID=Physo141241.8;Parent=Physo141241;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_96 . CDS 14006 14609 . - 0 ID=Physo141241;Parent=Physo141241;rank=7 scaffold_96 . exon 14006 14609 . - . ID=Physo141241.7;Parent=Physo141241;constitutive=1;ensembl_phase=2;rank=7 scaffold_96 . CDS 14971 15199 . - 0 ID=Physo141241;Parent=Physo141241;rank=6 scaffold_96 . exon 14971 15199 . - . ID=Physo141241.6;Parent=Physo141241;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_96 . CDS 15264 15327 . - 0 ID=Physo141241;Parent=Physo141241;rank=5 scaffold_96 . exon 15264 15327 . - . ID=Physo141241.5;Parent=Physo141241;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_96 . CDS 15415 15489 . - 0 ID=Physo141241;Parent=Physo141241;rank=4 scaffold_96 . exon 15415 15489 . - . ID=Physo141241.4;Parent=Physo141241;constitutive=1;rank=4 scaffold_96 . CDS 15559 15593 . - 0 ID=Physo141241;Parent=Physo141241;rank=3 scaffold_96 . exon 15559 15593 . - . ID=Physo141241.3;Parent=Physo141241;constitutive=1;ensembl_phase=1;rank=3 scaffold_96 . CDS 15695 15839 . - 0 ID=Physo141241;Parent=Physo141241;rank=2 scaffold_96 . exon 15695 15839 . - . ID=Physo141241.2;Parent=Physo141241;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_96 . CDS 15900 16241 . - 0 ID=Physo141241;Parent=Physo141241;rank=1 scaffold_96 . exon 15900 16241 . - . ID=Physo141241.1;Parent=Physo141241;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 18143 20084 . + . ID=Physo141242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960006;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 18143 20084 . + . ID=Physo141242;Parent=Physo141242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 18143 18317 . + 0 ID=Physo141242;Parent=Physo141242;rank=1 scaffold_96 . exon 18143 18317 . + . ID=Physo141242.1;Parent=Physo141242;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 18395 18594 . + 0 ID=Physo141242;Parent=Physo141242;rank=2 scaffold_96 . exon 18395 18594 . + . ID=Physo141242.2;Parent=Physo141242;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 18676 19629 . + 0 ID=Physo141242;Parent=Physo141242;rank=3 scaffold_96 . exon 18676 19629 . + . ID=Physo141242.3;Parent=Physo141242;constitutive=1;rank=3 scaffold_96 . CDS 19733 19761 . + 0 ID=Physo141242;Parent=Physo141242;rank=4 scaffold_96 . CDS 19985 20084 . + 0 ID=Physo141242;Parent=Physo141242;rank=5 scaffold_96 . repeat_region 20181 20190 . ? . description=dust scaffold_96 . repeat_region 20241 20248 . ? . description=dust scaffold_96 . biological_region 24002 24008 0.999 - . logic_name=eponine scaffold_96 . biological_region 24060 24064 0.999 + . logic_name=eponine scaffold_96 . biological_region 26416 26418 0.999 + . logic_name=eponine scaffold_96 . biological_region 27055 27056 0.999 + . logic_name=eponine scaffold_96 . exon 19733 19761 . + . ID=Physo141242.4;Parent=Physo141242;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_96 . exon 19985 20084 . + . ID=Physo141242.5;Parent=Physo141242;constitutive=1;ensembl_phase=2;rank=5 scaffold_96 ensembl protein_coding_gene 20498 22498 . + . ID=Physo141243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960007;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 20498 22498 . + . ID=Physo141243;Parent=Physo141243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 20498 21064 . + 0 ID=Physo141243;Parent=Physo141243;rank=1 scaffold_96 . exon 20498 21064 . + . ID=Physo141243.1;Parent=Physo141243;constitutive=1;rank=1 scaffold_96 . CDS 21111 21326 . + 0 ID=Physo141243;Parent=Physo141243;rank=2 scaffold_96 . exon 21111 21326 . + . ID=Physo141243.2;Parent=Physo141243;constitutive=1;rank=2 scaffold_96 . CDS 21374 21739 . + 0 ID=Physo141243;Parent=Physo141243;rank=3 scaffold_96 . exon 21374 21739 . + . ID=Physo141243.3;Parent=Physo141243;constitutive=1;rank=3 scaffold_96 . CDS 21795 22044 . + 0 ID=Physo141243;Parent=Physo141243;rank=4 scaffold_96 . exon 21795 22044 . + . ID=Physo141243.4;Parent=Physo141243;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_96 . CDS 22085 22391 . + 0 ID=Physo141243;Parent=Physo141243;rank=5 scaffold_96 . exon 22085 22391 . + . ID=Physo141243.5;Parent=Physo141243;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_96 . CDS 22432 22432 . + 0 ID=Physo141243;Parent=Physo141243;rank=6 scaffold_96 . exon 22432 22432 . + . ID=Physo141243.6;Parent=Physo141243;constitutive=1;ensembl_phase=2;rank=6 scaffold_96 . CDS 22481 22498 . + 0 ID=Physo141243;Parent=Physo141243;rank=7 scaffold_96 . exon 22481 22498 . + . ID=Physo141243.7;Parent=Physo141243;constitutive=1;rank=7 scaffold_96 ensembl protein_coding_gene 27097 28146 . + . ID=Physo158322;biotype=protein_coding;external_name=C_scaffold_96000003;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 27097 28146 . + . ID=Physo158322;Parent=Physo158322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 27097 27272 . + 0 ID=Physo158322;Parent=Physo158322;rank=1 scaffold_96 . exon 27097 27272 . + . ID=Physo158322.1;Parent=Physo158322;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . CDS 27357 28146 . + 0 ID=Physo158322;Parent=Physo158322;rank=2 scaffold_96 . exon 27357 28146 . + . ID=Physo158322.2;Parent=Physo158322;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . repeat_region 36869 36892 . ? . description=trf scaffold_96 . repeat_region 37747 37773 . ? . description=trf scaffold_96 ensembl protein_coding_gene 34150 34581 . - . ID=Physo141245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960009;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 34150 34581 . - . ID=Physo141245;Parent=Physo141245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 34150 34581 . - 0 ID=Physo141245;Parent=Physo141245;rank=1 scaffold_96 . exon 34150 34581 . - . ID=Physo141245.1;Parent=Physo141245;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 35250 37708 . + . ID=Physo141246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960010;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 35250 37708 . + . ID=Physo141246;Parent=Physo141246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 35250 35542 . + 0 ID=Physo141246;Parent=Physo141246;rank=1 scaffold_96 . exon 35250 35542 . + . ID=Physo141246.1;Parent=Physo141246;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . CDS 35616 36055 . + 0 ID=Physo141246;Parent=Physo141246;rank=2 scaffold_96 . exon 35616 36055 . + . ID=Physo141246.2;Parent=Physo141246;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 36138 36227 . + 0 ID=Physo141246;Parent=Physo141246;rank=3 scaffold_96 . exon 36138 36227 . + . ID=Physo141246.3;Parent=Physo141246;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_96 . CDS 36312 36433 . + 0 ID=Physo141246;Parent=Physo141246;rank=4 scaffold_96 . exon 36312 36433 . + . ID=Physo141246.4;Parent=Physo141246;constitutive=1;ensembl_phase=1;rank=4 scaffold_96 . CDS 36633 36736 . + 0 ID=Physo141246;Parent=Physo141246;rank=5 scaffold_96 . exon 36633 36736 . + . ID=Physo141246.5;Parent=Physo141246;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_96 . CDS 36979 37708 . + 0 ID=Physo141246;Parent=Physo141246;rank=6 scaffold_96 . exon 36979 37708 . + . ID=Physo141246.6;Parent=Physo141246;constitutive=1;ensembl_phase=2;rank=6 scaffold_96 . repeat_region 40528 40536 . ? . description=dust scaffold_96 . repeat_region 41111 41166 . ? . description=dust scaffold_96 ensembl protein_coding_gene 41356 41661 . - . ID=Physo109371;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_960001;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 41356 41661 . - . ID=Physo109371;Parent=Physo109371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 41356 41576 . - 0 ID=Physo109371;Parent=Physo109371;rank=2 scaffold_96 . exon 41356 41576 . - . ID=Physo109371.2;Parent=Physo109371;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 41610 41661 . - 0 ID=Physo109371;Parent=Physo109371;rank=1 scaffold_96 . exon 41610 41661 . - . ID=Physo109371.1;Parent=Physo109371;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . biological_region 50861 50863 0.999 - . logic_name=eponine scaffold_96 . repeat_region 61435 61626 . ? . description=trf scaffold_96 . repeat_region 61437 61626 . ? . description=trf scaffold_96 . repeat_region 63692 63975 . - . description=GypsyPi-1c_LTR scaffold_96 . repeat_region 64509 64563 . ? . description=trf scaffold_96 . repeat_region 65375 65388 . ? . description=dust scaffold_96 ensembl protein_coding_gene 68252 69443 . + . ID=Physo141248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960012;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 68252 69443 . + . ID=Physo141248;Parent=Physo141248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 68252 68432 . + . ID=Physo141248.1;Parent=Physo141248;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_96 . CDS 68353 68432 . + 0 ID=Physo141248;Parent=Physo141248;rank=1 scaffold_96 . CDS 68518 68722 . + 0 ID=Physo141248;Parent=Physo141248;rank=2 scaffold_96 . CDS 68802 68854 . + 0 ID=Physo141248;Parent=Physo141248;rank=3 scaffold_96 . CDS 68923 69124 . + 0 ID=Physo141248;Parent=Physo141248;rank=4 scaffold_96 . biological_region 71073 71073 0.999 - . logic_name=eponine scaffold_96 . biological_region 71091 71095 0.999 - . logic_name=eponine scaffold_96 . biological_region 73531 73536 0.999 + . logic_name=eponine scaffold_96 . biological_region 73561 73573 0.999 - . logic_name=eponine scaffold_96 . biological_region 76317 76319 0.999 + . logic_name=eponine scaffold_96 . biological_region 76833 76838 0.999 - . logic_name=eponine scaffold_96 . exon 68518 68722 . + . ID=Physo141248.2;Parent=Physo141248;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . exon 68802 68854 . + . ID=Physo141248.3;Parent=Physo141248;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_96 . exon 68923 69443 . + . ID=Physo141248.4;Parent=Physo141248;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_96 ensembl protein_coding_gene 71916 73319 . - . ID=Physo141251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960015;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 71916 73319 . - . ID=Physo141251;Parent=Physo141251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 71916 72046 . - 0 ID=Physo141251;Parent=Physo141251;rank=8 scaffold_96 . exon 71916 72046 . - . ID=Physo141251.8;Parent=Physo141251;constitutive=1;ensembl_phase=1;rank=8 scaffold_96 . CDS 72123 72184 . - 0 ID=Physo141251;Parent=Physo141251;rank=7 scaffold_96 . exon 72123 72184 . - . ID=Physo141251.7;Parent=Physo141251;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_96 . CDS 72285 72364 . - 0 ID=Physo141251;Parent=Physo141251;rank=6 scaffold_96 . exon 72285 72364 . - . ID=Physo141251.6;Parent=Physo141251;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_96 . CDS 72462 72527 . - 0 ID=Physo141251;Parent=Physo141251;rank=5 scaffold_96 . exon 72462 72527 . - . ID=Physo141251.5;Parent=Physo141251;constitutive=1;rank=5 scaffold_96 . CDS 72598 72894 . - 0 ID=Physo141251;Parent=Physo141251;rank=4 scaffold_96 . exon 72598 72894 . - . ID=Physo141251.4;Parent=Physo141251;constitutive=1;rank=4 scaffold_96 . CDS 72962 73035 . - 0 ID=Physo141251;Parent=Physo141251;rank=3 scaffold_96 . exon 72962 73035 . - . ID=Physo141251.3;Parent=Physo141251;constitutive=1;ensembl_phase=1;rank=3 scaffold_96 . CDS 73118 73161 . - 0 ID=Physo141251;Parent=Physo141251;rank=2 scaffold_96 . exon 73118 73161 . - . ID=Physo141251.2;Parent=Physo141251;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 73250 73281 . - 0 ID=Physo141251;Parent=Physo141251;rank=1 scaffold_96 . exon 73250 73319 . - . ID=Physo141251.1;Parent=Physo141251;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_96 ensembl protein_coding_gene 76172 77758 . + . ID=Physo141253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960017;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 76172 77758 . + . ID=Physo141253;Parent=Physo141253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 76172 76618 . + 0 ID=Physo141253;Parent=Physo141253;rank=1 scaffold_96 . exon 76172 76618 . + . ID=Physo141253.1;Parent=Physo141253;constitutive=1;rank=1 scaffold_96 . CDS 76712 77758 . + 0 ID=Physo141253;Parent=Physo141253;rank=2 scaffold_96 . exon 76712 77758 . + . ID=Physo141253.2;Parent=Physo141253;constitutive=1;rank=2 scaffold_96 ensembl protein_coding_gene 69916 70786 . + . ID=Physo158323;biotype=protein_coding;external_name=C_scaffold_96000004;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 69916 70786 . + . ID=Physo158323;Parent=Physo158323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 69916 70065 . + 0 ID=Physo158323;Parent=Physo158323;rank=1 scaffold_96 . exon 69916 70065 . + . ID=Physo158323.1;Parent=Physo158323;constitutive=1;rank=1 scaffold_96 . CDS 70133 70242 . + 0 ID=Physo158323;Parent=Physo158323;rank=2 scaffold_96 . exon 70133 70242 . + . ID=Physo158323.2;Parent=Physo158323;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_96 . CDS 70279 70537 . + 0 ID=Physo158323;Parent=Physo158323;rank=3 scaffold_96 . exon 70279 70537 . + . ID=Physo158323.3;Parent=Physo158323;constitutive=1;ensembl_phase=2;rank=3 scaffold_96 . CDS 70607 70786 . + 0 ID=Physo158323;Parent=Physo158323;rank=4 scaffold_96 . exon 70607 70786 . + . ID=Physo158323.4;Parent=Physo158323;constitutive=1;rank=4 scaffold_96 ensembl protein_coding_gene 70909 71718 . - . ID=Physo158324;biotype=protein_coding;external_name=C_scaffold_96000005;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 70909 71718 . - . ID=Physo158324;Parent=Physo158324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 70909 71718 . - 0 ID=Physo158324;Parent=Physo158324;rank=1 scaffold_96 . exon 70909 71718 . - . ID=Physo158324.1;Parent=Physo158324;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 73458 75237 . + . ID=Physo158326;biotype=protein_coding;external_name=C_scaffold_96000007;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 73458 75237 . + . ID=Physo158326;Parent=Physo158326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 73458 73688 . + 0 ID=Physo158326;Parent=Physo158326;rank=1 scaffold_96 . exon 73458 73688 . + . ID=Physo158326.1;Parent=Physo158326;constitutive=1;rank=1 scaffold_96 . CDS 73826 73947 . + 0 ID=Physo158326;Parent=Physo158326;rank=2 scaffold_96 . exon 73826 73947 . + . ID=Physo158326.2;Parent=Physo158326;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_96 . CDS 74021 74075 . + 0 ID=Physo158326;Parent=Physo158326;rank=3 scaffold_96 . exon 74021 74075 . + . ID=Physo158326.3;Parent=Physo158326;constitutive=1;ensembl_phase=2;rank=3 scaffold_96 . CDS 74152 74217 . + 0 ID=Physo158326;Parent=Physo158326;rank=4 scaffold_96 . exon 74152 74217 . + . ID=Physo158326.4;Parent=Physo158326;constitutive=1;rank=4 scaffold_96 . CDS 74291 74380 . + 0 ID=Physo158326;Parent=Physo158326;rank=5 scaffold_96 . exon 74291 74380 . + . ID=Physo158326.5;Parent=Physo158326;constitutive=1;rank=5 scaffold_96 . CDS 74546 74893 . + 0 ID=Physo158326;Parent=Physo158326;rank=6 scaffold_96 . exon 74546 74893 . + . ID=Physo158326.6;Parent=Physo158326;constitutive=1;rank=6 scaffold_96 . CDS 75118 75237 . + 0 ID=Physo158326;Parent=Physo158326;rank=7 scaffold_96 . exon 75118 75237 . + . ID=Physo158326.7;Parent=Physo158326;constitutive=1;rank=7 scaffold_96 ensembl protein_coding_gene 77857 80076 . - . ID=Physo158327;biotype=protein_coding;external_name=C_scaffold_96000008;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 77857 80076 . - . ID=Physo158327;Parent=Physo158327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 77857 77943 . - 0 ID=Physo158327;Parent=Physo158327;rank=6 scaffold_96 . exon 77857 77943 . - . ID=Physo158327.6;Parent=Physo158327;constitutive=1;rank=6 scaffold_96 . CDS 77994 78396 . - 0 ID=Physo158327;Parent=Physo158327;rank=5 scaffold_96 . exon 77994 78396 . - . ID=Physo158327.5;Parent=Physo158327;constitutive=1;ensembl_phase=2;rank=5 scaffold_96 . CDS 78464 78683 . - 0 ID=Physo158327;Parent=Physo158327;rank=4 scaffold_96 . CDS 78711 79231 . - 0 ID=Physo158327;Parent=Physo158327;rank=3 scaffold_96 . CDS 79298 79536 . - 0 ID=Physo158327;Parent=Physo158327;rank=2 scaffold_96 . CDS 79558 80076 . - 0 ID=Physo158327;Parent=Physo158327;rank=1 scaffold_96 ensembl tRNA_gene 81372 81443 . + . ID=EPrPSOG00000000173;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_96 ensembl transcript 81372 81443 . + . ID=EPrPSOT00000000173;Parent=EPrPSOG00000000173;biotype=tRNA;logic_name=ncrna_eg scaffold_96 . exon 81372 81443 . + . ID=EPrPSOE00000000173;Parent=EPrPSOT00000000173;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 81628 83242 . - . ID=Physo141255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960019;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 81628 83242 . - . ID=Physo141255;Parent=Physo141255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 81628 81665 . - 0 ID=Physo141255;Parent=Physo141255;rank=2 scaffold_96 . exon 81628 81665 . - . ID=Physo141255.2;Parent=Physo141255;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 81799 83242 . - 0 ID=Physo141255;Parent=Physo141255;rank=1 scaffold_96 . exon 81799 83242 . - . ID=Physo141255.1;Parent=Physo141255;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 ensembl protein_coding_gene 84487 86299 . - . ID=Physo141256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960020;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 84487 86299 . - . ID=Physo141256;Parent=Physo141256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 84487 85743 . - 0 ID=Physo141256;Parent=Physo141256;rank=3 scaffold_96 . exon 84487 85743 . - . ID=Physo141256.3;Parent=Physo141256;constitutive=1;rank=3 scaffold_96 . CDS 85824 86026 . - 0 ID=Physo141256;Parent=Physo141256;rank=2 scaffold_96 . exon 85824 86026 . - . ID=Physo141256.2;Parent=Physo141256;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 86095 86299 . - 0 ID=Physo141256;Parent=Physo141256;rank=1 scaffold_96 . exon 86095 86299 . - . ID=Physo141256.1;Parent=Physo141256;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 ensembl protein_coding_gene 87303 91327 . - . ID=Physo141257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960021;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 87303 91327 . - . ID=Physo141257;Parent=Physo141257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 87303 87440 . - 0 ID=Physo141257;Parent=Physo141257;rank=2 scaffold_96 . exon 87303 87440 . - . ID=Physo141257.2;Parent=Physo141257;constitutive=1;rank=2 scaffold_96 . CDS 87521 91327 . - 0 ID=Physo141257;Parent=Physo141257;rank=1 scaffold_96 . exon 87521 91327 . - . ID=Physo141257.1;Parent=Physo141257;constitutive=1;rank=1 scaffold_96 . exon 78464 78683 . - . ID=Physo158327.4;Parent=Physo158327;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_96 . exon 78711 79231 . - . ID=Physo158327.3;Parent=Physo158327;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_96 . exon 79298 79536 . - . ID=Physo158327.2;Parent=Physo158327;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_96 . exon 79558 80076 . - . ID=Physo158327.1;Parent=Physo158327;constitutive=1;rank=1 scaffold_96 . repeat_region 91660 91698 . ? . description=dust scaffold_96 . repeat_region 91765 91776 . ? . description=dust scaffold_96 . repeat_region 92278 92285 . ? . description=dust scaffold_96 . biological_region 94704 94705 0.999 + . logic_name=eponine scaffold_96 . biological_region 94726 94729 0.999 - . logic_name=eponine scaffold_96 . biological_region 95044 95044 0.999 + . logic_name=eponine scaffold_96 . repeat_region 95667 95729 . ? . description=dust scaffold_96 . biological_region 96028 96030 0.999 - . logic_name=eponine scaffold_96 . biological_region 96065 96066 0.999 - . logic_name=eponine scaffold_96 . biological_region 97845 97847 0.999 - . logic_name=eponine scaffold_96 ensembl protein_coding_gene 93053 94276 . - . ID=Physo141258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960022;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 93053 94276 . - . ID=Physo141258;Parent=Physo141258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 93053 93293 . - 0 ID=Physo141258;Parent=Physo141258;rank=3 scaffold_96 . exon 93053 93293 . - . ID=Physo141258.3;Parent=Physo141258;constitutive=1;ensembl_phase=2;rank=3 scaffold_96 . CDS 93319 93747 . - 0 ID=Physo141258;Parent=Physo141258;rank=2 scaffold_96 . exon 93319 93747 . - . ID=Physo141258.2;Parent=Physo141258;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_96 . CDS 93816 94276 . - 0 ID=Physo141258;Parent=Physo141258;rank=1 scaffold_96 . exon 93816 94276 . - . ID=Physo141258.1;Parent=Physo141258;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 ensembl protein_coding_gene 94600 95463 . + . ID=Physo141259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960023;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 94600 95463 . + . ID=Physo141259;Parent=Physo141259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 94600 95463 . + 0 ID=Physo141259;Parent=Physo141259;rank=1 scaffold_96 . exon 94600 95463 . + . ID=Physo141259.1;Parent=Physo141259;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 96664 98366 . + . ID=Physo141261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960025;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 96664 98366 . + . ID=Physo141261;Parent=Physo141261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 96664 98128 . + . ID=Physo141261.1;Parent=Physo141261;constitutive=1;ensembl_phase=-1;rank=1 scaffold_96 . CDS 96677 98128 . + 0 ID=Physo141261;Parent=Physo141261;rank=1 scaffold_96 . CDS 98211 98366 . + 0 ID=Physo141261;Parent=Physo141261;rank=2 scaffold_96 ensembl protein_coding_gene 95647 96511 . - . ID=Physo158329;biotype=protein_coding;external_name=C_scaffold_96000010;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 95647 96511 . - . ID=Physo158329;Parent=Physo158329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 95647 95950 . - 0 ID=Physo158329;Parent=Physo158329;rank=4 scaffold_96 . exon 95647 95950 . - . ID=Physo158329.4;Parent=Physo158329;constitutive=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 96134 96208 . - 0 ID=Physo158329;Parent=Physo158329;rank=3 scaffold_96 . exon 96134 96208 . - . ID=Physo158329.3;Parent=Physo158329;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_96 . CDS 96277 96341 . - 0 ID=Physo158329;Parent=Physo158329;rank=2 scaffold_96 . exon 96277 96341 . - . ID=Physo158329.2;Parent=Physo158329;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_96 . CDS 96416 96511 . - 0 ID=Physo158329;Parent=Physo158329;rank=1 scaffold_96 . exon 96416 96511 . - . ID=Physo158329.1;Parent=Physo158329;constitutive=1;rank=1 scaffold_96 . repeat_region 104315 104335 . ? . description=trf scaffold_96 ensembl protein_coding_gene 98410 99333 . - . ID=Physo109372;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_960002;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 98410 99333 . - . ID=Physo109372;Parent=Physo109372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 98410 98525 . - . ID=Physo109372.5;Parent=Physo109372;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_96 . CDS 98497 98525 . - 0 ID=Physo109372;Parent=Physo109372;rank=5 scaffold_96 . CDS 98616 98888 . - 0 ID=Physo109372;Parent=Physo109372;rank=4 scaffold_96 . exon 98616 98888 . - . ID=Physo109372.4;Parent=Physo109372;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_96 . CDS 98969 99055 . - 0 ID=Physo109372;Parent=Physo109372;rank=3 scaffold_96 . exon 98969 99055 . - . ID=Physo109372.3;Parent=Physo109372;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_96 . CDS 99124 99151 . - 0 ID=Physo109372;Parent=Physo109372;rank=2 scaffold_96 . exon 99124 99151 . - . ID=Physo109372.2;Parent=Physo109372;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_96 . CDS 99256 99288 . - 0 ID=Physo109372;Parent=Physo109372;rank=1 scaffold_96 . exon 99256 99333 . - . ID=Physo109372.1;Parent=Physo109372;constitutive=1;ensembl_phase=-1;rank=1 scaffold_96 ensembl protein_coding_gene 106015 107118 . + . ID=Physo121810;biotype=protein_coding;external_name=estExt_Genewise1.C_960032;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 106015 107118 . + . ID=Physo121810;Parent=Physo121810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 106015 106146 . + . ID=Physo121810.1;Parent=Physo121810;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_96 . exon 106218 106280 . + . ID=Physo121810.2;Parent=Physo121810;constitutive=1;ensembl_phase=-1;rank=2 scaffold_96 . CDS 106227 106280 . + 0 ID=Physo121810;Parent=Physo121810;rank=1 scaffold_96 . CDS 106346 106431 . + 0 ID=Physo121810;Parent=Physo121810;rank=2 scaffold_96 . exon 106346 106431 . + . ID=Physo121810.3;Parent=Physo121810;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_96 . CDS 106503 106658 . + 0 ID=Physo121810;Parent=Physo121810;rank=3 scaffold_96 . exon 106503 106658 . + . ID=Physo121810.4;Parent=Physo121810;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_96 . CDS 106731 107118 . + 0 ID=Physo121810;Parent=Physo121810;rank=4 scaffold_96 . exon 106731 107118 . + . ID=Physo121810.5;Parent=Physo121810;constitutive=1;ensembl_phase=2;rank=5 scaffold_96 . exon 98211 98366 . + . ID=Physo141261.2;Parent=Physo141261;constitutive=1;rank=2 scaffold_96 . repeat_region 108415 108422 . ? . description=dust scaffold_96 . biological_region 114176 114178 0.999 + . logic_name=eponine scaffold_96 . biological_region 114192 114195 0.999 + . logic_name=eponine scaffold_96 . biological_region 114246 114248 0.999 - . logic_name=eponine scaffold_96 . biological_region 115420 115423 0.999 + . logic_name=eponine scaffold_96 . biological_region 116131 116133 0.999 - . logic_name=eponine scaffold_96 . biological_region 116207 116209 0.999 - . logic_name=eponine scaffold_96 . repeat_region 116900 116970 . ? . description=dust scaffold_96 . repeat_region 117062 117112 . ? . description=dust scaffold_96 ensembl protein_coding_gene 113964 115579 . + . ID=Physo109373;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_960003;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 113964 115579 . + . ID=Physo109373;Parent=Physo109373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 113964 115385 . + 0 ID=Physo109373;Parent=Physo109373;rank=1 scaffold_96 . exon 113964 115579 . + . ID=Physo109373.1;Parent=Physo109373;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_96 ensembl protein_coding_gene 116351 118174 . + . ID=Physo141267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960031;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 116351 118174 . + . ID=Physo141267;Parent=Physo141267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 116351 118174 . + . ID=Physo141267.1;Parent=Physo141267;constitutive=1;ensembl_phase=-1;rank=1 scaffold_96 . CDS 116378 118174 . + 0 ID=Physo141267;Parent=Physo141267;rank=1 scaffold_96 ensembl protein_coding_gene 109400 110785 . - . ID=Physo158332;biotype=protein_coding;external_name=C_scaffold_96000013;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 109400 110785 . - . ID=Physo158332;Parent=Physo158332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 109400 109433 . - 0 ID=Physo158332;Parent=Physo158332;rank=4 scaffold_96 . exon 109400 109433 . - . ID=Physo158332.4;Parent=Physo158332;constitutive=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 109675 109982 . - 0 ID=Physo158332;Parent=Physo158332;rank=3 scaffold_96 . exon 109675 109982 . - . ID=Physo158332.3;Parent=Physo158332;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_96 . CDS 110042 110157 . - 0 ID=Physo158332;Parent=Physo158332;rank=2 scaffold_96 . exon 110042 110157 . - . ID=Physo158332.2;Parent=Physo158332;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 110239 110785 . - 0 ID=Physo158332;Parent=Physo158332;rank=1 scaffold_96 . exon 110239 110785 . - . ID=Physo158332.1;Parent=Physo158332;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 ensembl protein_coding_gene 110927 112346 . + . ID=Physo158334;biotype=protein_coding;external_name=C_scaffold_96000015;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 110927 112346 . + . ID=Physo158334;Parent=Physo158334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 110927 110976 . + 0 ID=Physo158334;Parent=Physo158334;rank=1 scaffold_96 . exon 110927 110976 . + . ID=Physo158334.1;Parent=Physo158334;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . CDS 111007 111454 . + 0 ID=Physo158334;Parent=Physo158334;rank=2 scaffold_96 . exon 111007 111454 . + . ID=Physo158334.2;Parent=Physo158334;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 111476 111839 . + 0 ID=Physo158334;Parent=Physo158334;rank=3 scaffold_96 . exon 111476 111839 . + . ID=Physo158334.3;Parent=Physo158334;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_96 . CDS 111984 112162 . + 0 ID=Physo158334;Parent=Physo158334;rank=4 scaffold_96 . exon 111984 112162 . + . ID=Physo158334.4;Parent=Physo158334;constitutive=1;ensembl_phase=1;rank=4 scaffold_96 . CDS 112229 112253 . + 0 ID=Physo158334;Parent=Physo158334;rank=5 scaffold_96 . exon 112229 112253 . + . ID=Physo158334.5;Parent=Physo158334;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_96 . CDS 112327 112346 . + 0 ID=Physo158334;Parent=Physo158334;rank=6 scaffold_96 . exon 112327 112346 . + . ID=Physo158334.6;Parent=Physo158334;constitutive=1;ensembl_phase=1;rank=6 scaffold_96 . repeat_region 117847 117878 . ? . description=trf scaffold_96 ensembl protein_coding_gene 121908 127135 . + . ID=Physo141269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960033;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 121908 127135 . + . ID=Physo141269;Parent=Physo141269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 121908 122009 . + 0 ID=Physo141269;Parent=Physo141269;rank=1 scaffold_96 . exon 121908 122009 . + . ID=Physo141269.1;Parent=Physo141269;constitutive=1;rank=1 scaffold_96 . CDS 122095 122166 . + 0 ID=Physo141269;Parent=Physo141269;rank=2 scaffold_96 . exon 122095 122166 . + . ID=Physo141269.2;Parent=Physo141269;constitutive=1;rank=2 scaffold_96 . CDS 122244 123262 . + 0 ID=Physo141269;Parent=Physo141269;rank=3 scaffold_96 . exon 122244 123262 . + . ID=Physo141269.3;Parent=Physo141269;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_96 . CDS 123323 123410 . + 0 ID=Physo141269;Parent=Physo141269;rank=4 scaffold_96 . exon 123323 123410 . + . ID=Physo141269.4;Parent=Physo141269;constitutive=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 123480 124733 . + 0 ID=Physo141269;Parent=Physo141269;rank=5 scaffold_96 . exon 123480 124733 . + . ID=Physo141269.5;Parent=Physo141269;constitutive=1;rank=5 scaffold_96 . CDS 124811 124915 . + 0 ID=Physo141269;Parent=Physo141269;rank=6 scaffold_96 . exon 124811 124915 . + . ID=Physo141269.6;Parent=Physo141269;constitutive=1;rank=6 scaffold_96 . CDS 124978 127068 . + 0 ID=Physo141269;Parent=Physo141269;rank=7 scaffold_96 . exon 124978 127068 . + . ID=Physo141269.7;Parent=Physo141269;constitutive=1;rank=7 scaffold_96 . CDS 127097 127135 . + 0 ID=Physo141269;Parent=Physo141269;rank=8 scaffold_96 . exon 127097 127135 . + . ID=Physo141269.8;Parent=Physo141269;constitutive=1;rank=8 scaffold_96 ensembl protein_coding_gene 119141 121652 . - . ID=Physo158335;biotype=protein_coding;external_name=C_scaffold_96000016;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 119141 121652 . - . ID=Physo158335;Parent=Physo158335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 119141 119330 . - 0 ID=Physo158335;Parent=Physo158335;rank=6 scaffold_96 . exon 119141 119330 . - . ID=Physo158335.6;Parent=Physo158335;constitutive=1;ensembl_phase=2;rank=6 scaffold_96 . CDS 119394 119932 . - 0 ID=Physo158335;Parent=Physo158335;rank=5 scaffold_96 . exon 119394 119932 . - . ID=Physo158335.5;Parent=Physo158335;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_96 . CDS 120004 120178 . - 0 ID=Physo158335;Parent=Physo158335;rank=4 scaffold_96 . exon 120004 120178 . - . ID=Physo158335.4;Parent=Physo158335;constitutive=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 120242 121082 . - 0 ID=Physo158335;Parent=Physo158335;rank=3 scaffold_96 . exon 120242 121082 . - . ID=Physo158335.3;Parent=Physo158335;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_96 . CDS 121116 121421 . - 0 ID=Physo158335;Parent=Physo158335;rank=2 scaffold_96 . exon 121116 121421 . - . ID=Physo158335.2;Parent=Physo158335;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 121586 121652 . - 0 ID=Physo158335;Parent=Physo158335;rank=1 scaffold_96 . exon 121586 121652 . - . ID=Physo158335.1;Parent=Physo158335;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . biological_region 127867 127870 0.999 - . logic_name=eponine scaffold_96 . biological_region 128210 128214 0.999 - . logic_name=eponine scaffold_96 . biological_region 128237 128243 0.999 + . logic_name=eponine scaffold_96 . biological_region 128264 128270 0.999 + . logic_name=eponine scaffold_96 . biological_region 128468 128471 0.999 - . logic_name=eponine scaffold_96 . repeat_region 128526 128534 . ? . description=dust scaffold_96 . repeat_region 128802 128810 . ? . description=dust scaffold_96 . biological_region 130622 130633 0.999 + . logic_name=eponine scaffold_96 . biological_region 130684 130687 0.999 - . logic_name=eponine scaffold_96 . biological_region 130755 130759 0.999 - . logic_name=eponine scaffold_96 . biological_region 130774 130777 0.999 - . logic_name=eponine scaffold_96 . biological_region 131241 131245 0.999 - . logic_name=eponine scaffold_96 . biological_region 131262 131264 0.999 - . logic_name=eponine scaffold_96 . repeat_region 131470 131477 . ? . description=dust scaffold_96 . biological_region 131666 131672 0.999 - . logic_name=eponine scaffold_96 . biological_region 132284 132286 0.999 - . logic_name=eponine scaffold_96 . biological_region 134464 134466 0.999 + . logic_name=eponine scaffold_96 . repeat_region 134920 134961 . ? . description=dust scaffold_96 . biological_region 136137 136140 0.999 + . logic_name=eponine scaffold_96 . repeat_region 136927 136956 . ? . description=dust scaffold_96 ensembl protein_coding_gene 135462 137337 . - . ID=Physo109375;biotype=protein_coding;description=ATP synthase subunit beta [Source:UniProtKB/TrEMBL%3BAcc:B6V9Y7];external_name=estExt_fgenesh1_pm.C_960005;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 135462 137337 . - . ID=Physo109375;Parent=Physo109375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 135462 136904 . - . ID=Physo109375.2;Parent=Physo109375;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_96 . CDS 135702 136904 . - 0 ID=Physo109375;Parent=Physo109375;rank=2 scaffold_96 . CDS 137018 137311 . - 0 ID=Physo109375;Parent=Physo109375;rank=1 scaffold_96 . exon 137018 137337 . - . ID=Physo109375.1;Parent=Physo109375;constitutive=1;ensembl_phase=-1;rank=1 scaffold_96 ensembl protein_coding_gene 131734 133074 . + . ID=Physo121819;biotype=protein_coding;external_name=estExt_Genewise1.C_960041;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 131734 133074 . + . ID=Physo121819;Parent=Physo121819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 131734 131843 . + . ID=Physo121819.1;Parent=Physo121819;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_96 . exon 131931 133074 . + . ID=Physo121819.2;Parent=Physo121819;constitutive=1;ensembl_phase=-1;rank=2 scaffold_96 . CDS 132019 133074 . + 0 ID=Physo121819;Parent=Physo121819;rank=1 scaffold_96 ensembl protein_coding_gene 127463 128512 . - . ID=Physo141270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960034;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 127463 128512 . - . ID=Physo141270;Parent=Physo141270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 127463 128512 . - . ID=Physo141270.1;Parent=Physo141270;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_96 . CDS 127499 128512 . - 0 ID=Physo141270;Parent=Physo141270;rank=1 scaffold_96 ensembl protein_coding_gene 129204 130766 . - . ID=Physo141271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960035;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 129204 130766 . - . ID=Physo141271;Parent=Physo141271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 129204 129502 . - 0 ID=Physo141271;Parent=Physo141271;rank=6 scaffold_96 . exon 129204 129502 . - . ID=Physo141271.6;Parent=Physo141271;constitutive=1;ensembl_phase=1;rank=6 scaffold_96 . CDS 129585 129648 . - 0 ID=Physo141271;Parent=Physo141271;rank=5 scaffold_96 . exon 129585 129648 . - . ID=Physo141271.5;Parent=Physo141271;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_96 . CDS 129723 130139 . - 0 ID=Physo141271;Parent=Physo141271;rank=4 scaffold_96 . exon 129723 130139 . - . ID=Physo141271.4;Parent=Physo141271;constitutive=1;rank=4 scaffold_96 . CDS 130218 130291 . - 0 ID=Physo141271;Parent=Physo141271;rank=3 scaffold_96 . exon 130218 130291 . - . ID=Physo141271.3;Parent=Physo141271;constitutive=1;ensembl_phase=1;rank=3 scaffold_96 . CDS 130427 130438 . - 0 ID=Physo141271;Parent=Physo141271;rank=2 scaffold_96 . exon 130427 130438 . - . ID=Physo141271.2;Parent=Physo141271;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 130523 130766 . - 0 ID=Physo141271;Parent=Physo141271;rank=1 scaffold_96 . exon 130523 130766 . - . ID=Physo141271.1;Parent=Physo141271;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 ensembl protein_coding_gene 133751 134993 . + . ID=Physo141273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960037;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 133751 134993 . + . ID=Physo141273;Parent=Physo141273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 133751 133793 . + 0 ID=Physo141273;Parent=Physo141273;rank=1 scaffold_96 . exon 133751 133793 . + . ID=Physo141273.1;Parent=Physo141273;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 133888 134034 . + 0 ID=Physo141273;Parent=Physo141273;rank=2 scaffold_96 . exon 133888 134034 . + . ID=Physo141273.2;Parent=Physo141273;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 134164 134993 . + 0 ID=Physo141273;Parent=Physo141273;rank=3 scaffold_96 . exon 134164 134993 . + . ID=Physo141273.3;Parent=Physo141273;constitutive=1;ensembl_phase=1;rank=3 scaffold_96 ensembl protein_coding_gene 138927 140733 . - . ID=Physo109376;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_960006;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 138927 140733 . - . ID=Physo109376;Parent=Physo109376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 138927 139014 . - 0 ID=Physo109376;Parent=Physo109376;rank=7 scaffold_96 . exon 138927 139014 . - . ID=Physo109376.7;Parent=Physo109376;constitutive=1;ensembl_phase=2;rank=7 scaffold_96 . CDS 139050 139399 . - 0 ID=Physo109376;Parent=Physo109376;rank=6 scaffold_96 . exon 139050 139399 . - . ID=Physo109376.6;Parent=Physo109376;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_96 . CDS 139476 139610 . - 0 ID=Physo109376;Parent=Physo109376;rank=5 scaffold_96 . exon 139476 139610 . - . ID=Physo109376.5;Parent=Physo109376;constitutive=1;rank=5 scaffold_96 . CDS 139712 139790 . - 0 ID=Physo109376;Parent=Physo109376;rank=4 scaffold_96 . exon 139712 139790 . - . ID=Physo109376.4;Parent=Physo109376;constitutive=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 139880 140019 . - 0 ID=Physo109376;Parent=Physo109376;rank=3 scaffold_96 . exon 139880 140019 . - . ID=Physo109376.3;Parent=Physo109376;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_96 . CDS 140124 140320 . - 0 ID=Physo109376;Parent=Physo109376;rank=2 scaffold_96 . exon 140124 140320 . - . ID=Physo109376.2;Parent=Physo109376;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 140406 140733 . - 0 ID=Physo109376;Parent=Physo109376;rank=1 scaffold_96 . exon 140406 140733 . - . ID=Physo109376.1;Parent=Physo109376;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 ensembl protein_coding_gene 142041 143870 . + . ID=Physo141276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960040;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 142041 143870 . + . ID=Physo141276;Parent=Physo141276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 142041 143870 . + 0 ID=Physo141276;Parent=Physo141276;rank=1 scaffold_96 . exon 142041 143870 . + . ID=Physo141276.1;Parent=Physo141276;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 145708 147054 . - . ID=Physo141277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960041;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 145708 147054 . - . ID=Physo141277;Parent=Physo141277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 145708 147054 . - 0 ID=Physo141277;Parent=Physo141277;rank=1 scaffold_96 . exon 145708 147054 . - . ID=Physo141277.1;Parent=Physo141277;constitutive=1;rank=1 scaffold_96 . repeat_region 147646 147657 . ? . description=dust scaffold_96 . repeat_region 148519 148589 . ? . description=dust scaffold_96 . biological_region 152485 152490 0.999 + . logic_name=eponine scaffold_96 . biological_region 154012 154015 0.999 - . logic_name=eponine scaffold_96 . biological_region 155846 155848 0.999 + . logic_name=eponine scaffold_96 . biological_region 156103 156104 0.999 + . logic_name=eponine scaffold_96 ensembl protein_coding_gene 147990 148784 . - . ID=Physo141278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960042;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 147990 148784 . - . ID=Physo141278;Parent=Physo141278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 147990 148784 . - 0 ID=Physo141278;Parent=Physo141278;rank=1 scaffold_96 . exon 147990 148784 . - . ID=Physo141278.1;Parent=Physo141278;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 150445 151052 . + . ID=Physo141279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960043;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 150445 151052 . + . ID=Physo141279;Parent=Physo141279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 150445 150896 . + 0 ID=Physo141279;Parent=Physo141279;rank=1 scaffold_96 . exon 150445 150896 . + . ID=Physo141279.1;Parent=Physo141279;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . CDS 151043 151052 . + 0 ID=Physo141279;Parent=Physo141279;rank=2 scaffold_96 . exon 151043 151052 . + . ID=Physo141279.2;Parent=Physo141279;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 ensembl protein_coding_gene 155822 158862 . + . ID=Physo141280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960044;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 155822 158862 . + . ID=Physo141280;Parent=Physo141280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 155822 157633 . + 0 ID=Physo141280;Parent=Physo141280;rank=1 scaffold_96 . exon 155822 157633 . + . ID=Physo141280.1;Parent=Physo141280;constitutive=1;rank=1 scaffold_96 . CDS 157661 158084 . + 0 ID=Physo141280;Parent=Physo141280;rank=2 scaffold_96 . CDS 158264 158307 . + 0 ID=Physo141280;Parent=Physo141280;rank=3 scaffold_96 . exon 157661 158084 . + . ID=Physo141280.2;Parent=Physo141280;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_96 . exon 158264 158862 . + . ID=Physo141280.3;Parent=Physo141280;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_96 . repeat_region 170349 170383 . ? . description=dust scaffold_96 . biological_region 171853 171855 0.999 + . logic_name=eponine scaffold_96 . repeat_region 172187 172238 . ? . description=dust scaffold_96 . repeat_region 172193 172238 . ? . description=trf scaffold_96 . repeat_region 174001 174008 . ? . description=dust scaffold_96 . repeat_region 181457 183837 . + . description=GypsyPi-1c_I-int scaffold_96 ensembl protein_coding_gene 178841 184320 . + . ID=Physo141281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960045;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 178841 184320 . + . ID=Physo141281;Parent=Physo141281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 178841 179813 . + 0 ID=Physo141281;Parent=Physo141281;rank=1 scaffold_96 . exon 178841 179813 . + . ID=Physo141281.1;Parent=Physo141281;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 179888 181166 . + 0 ID=Physo141281;Parent=Physo141281;rank=2 scaffold_96 . exon 179888 181166 . + . ID=Physo141281.2;Parent=Physo141281;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_96 . CDS 181307 181854 . + 0 ID=Physo141281;Parent=Physo141281;rank=3 scaffold_96 . exon 181307 181854 . + . ID=Physo141281.3;Parent=Physo141281;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_96 . CDS 181940 182463 . + 0 ID=Physo141281;Parent=Physo141281;rank=4 scaffold_96 . exon 181940 182463 . + . ID=Physo141281.4;Parent=Physo141281;constitutive=1;ensembl_phase=1;rank=4 scaffold_96 . CDS 182511 184192 . + 0 ID=Physo141281;Parent=Physo141281;rank=5 scaffold_96 . exon 182511 184192 . + . ID=Physo141281.5;Parent=Physo141281;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_96 . CDS 184221 184320 . + 0 ID=Physo141281;Parent=Physo141281;rank=6 scaffold_96 . exon 184221 184320 . + . ID=Physo141281.6;Parent=Physo141281;constitutive=1;ensembl_phase=2;rank=6 scaffold_96 . biological_region 187377 187381 0.999 - . logic_name=eponine scaffold_96 . repeat_region 191432 191444 . ? . description=dust scaffold_96 . repeat_region 193047 193118 . ? . description=trf scaffold_96 . repeat_region 193068 193127 . ? . description=trf scaffold_96 ensembl protein_coding_gene 188349 192309 . - . ID=Physo141282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960046;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 188349 192309 . - . ID=Physo141282;Parent=Physo141282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 188349 190657 . - 0 ID=Physo141282;Parent=Physo141282;rank=5 scaffold_96 . exon 188349 190657 . - . ID=Physo141282.5;Parent=Physo141282;constitutive=1;ensembl_phase=1;rank=5 scaffold_96 . CDS 190724 191169 . - 0 ID=Physo141282;Parent=Physo141282;rank=4 scaffold_96 . exon 190724 191169 . - . ID=Physo141282.4;Parent=Physo141282;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 191248 191425 . - 0 ID=Physo141282;Parent=Physo141282;rank=3 scaffold_96 . exon 191248 191425 . - . ID=Physo141282.3;Parent=Physo141282;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_96 . CDS 191501 191531 . - 0 ID=Physo141282;Parent=Physo141282;rank=2 scaffold_96 . exon 191501 191531 . - . ID=Physo141282.2;Parent=Physo141282;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_96 . CDS 191620 192309 . - 0 ID=Physo141282;Parent=Physo141282;rank=1 scaffold_96 . exon 191620 192309 . - . ID=Physo141282.1;Parent=Physo141282;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 199526 200332 . + . ID=Physo141283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960047;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 199526 200332 . + . ID=Physo141283;Parent=Physo141283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 199526 200332 . + . ID=Physo141283.1;Parent=Physo141283;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_96 . CDS 199604 200200 . + 0 ID=Physo141283;Parent=Physo141283;rank=1 scaffold_96 ensembl protein_coding_gene 200479 201864 . + . ID=Physo141284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960048;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 200479 201864 . + . ID=Physo141284;Parent=Physo141284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 200479 201864 . + 0 ID=Physo141284;Parent=Physo141284;rank=1 scaffold_96 . exon 200479 201864 . + . ID=Physo141284.1;Parent=Physo141284;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 202198 202850 . + . ID=Physo141285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960049;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 202198 202850 . + . ID=Physo141285;Parent=Physo141285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 202198 202850 . + . ID=Physo141285.1;Parent=Physo141285;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_96 . CDS 202232 202831 . + 0 ID=Physo141285;Parent=Physo141285;rank=1 scaffold_96 ensembl protein_coding_gene 202959 206818 . - . ID=Physo141286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960050;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 202959 206818 . - . ID=Physo141286;Parent=Physo141286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 202959 205692 . - 0 ID=Physo141286;Parent=Physo141286;rank=5 scaffold_96 . exon 202959 205692 . - . ID=Physo141286.5;Parent=Physo141286;constitutive=1;ensembl_phase=2;rank=5 scaffold_96 . CDS 205757 205931 . - 0 ID=Physo141286;Parent=Physo141286;rank=4 scaffold_96 . CDS 205997 206060 . - 0 ID=Physo141286;Parent=Physo141286;rank=3 scaffold_96 . CDS 206115 206512 . - 0 ID=Physo141286;Parent=Physo141286;rank=2 scaffold_96 . CDS 206578 206818 . - 0 ID=Physo141286;Parent=Physo141286;rank=1 scaffold_96 . repeat_region 206819 206844 . ? . description=dust scaffold_96 . repeat_region 206819 206844 . ? . description=trf scaffold_96 . biological_region 209370 209370 0.999 - . logic_name=eponine scaffold_96 . biological_region 209702 209702 0.999 - . logic_name=eponine scaffold_96 . biological_region 209899 209902 0.999 + . logic_name=eponine scaffold_96 . biological_region 210708 210712 0.999 + . logic_name=eponine scaffold_96 . repeat_region 212011 212461 . - . description=Gypsy-2-I_PI-int scaffold_96 . repeat_region 212752 212764 . ? . description=dust scaffold_96 . repeat_region 213399 213449 . ? . description=trf scaffold_96 . repeat_region 213400 213449 . ? . description=trf scaffold_96 . biological_region 213683 213687 0.999 - . logic_name=eponine scaffold_96 . exon 205757 205931 . - . ID=Physo141286.4;Parent=Physo141286;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_96 . exon 205997 206060 . - . ID=Physo141286.3;Parent=Physo141286;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_96 . exon 206115 206512 . - . ID=Physo141286.2;Parent=Physo141286;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . exon 206578 206818 . - . ID=Physo141286.1;Parent=Physo141286;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 ensembl protein_coding_gene 207522 209454 . + . ID=Physo141287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960051;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 207522 209454 . + . ID=Physo141287;Parent=Physo141287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 207522 207845 . + 0 ID=Physo141287;Parent=Physo141287;rank=1 scaffold_96 . exon 207522 207845 . + . ID=Physo141287.1;Parent=Physo141287;constitutive=1;rank=1 scaffold_96 . CDS 207890 208238 . + 0 ID=Physo141287;Parent=Physo141287;rank=2 scaffold_96 . exon 207890 208238 . + . ID=Physo141287.2;Parent=Physo141287;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_96 . CDS 208264 208442 . + 0 ID=Physo141287;Parent=Physo141287;rank=3 scaffold_96 . exon 208264 208442 . + . ID=Physo141287.3;Parent=Physo141287;constitutive=1;ensembl_phase=1;rank=3 scaffold_96 . CDS 208507 209454 . + 0 ID=Physo141287;Parent=Physo141287;rank=4 scaffold_96 . exon 208507 209454 . + . ID=Physo141287.4;Parent=Physo141287;constitutive=1;rank=4 scaffold_96 ensembl protein_coding_gene 209549 210099 . - . ID=Physo141288;biotype=protein_coding;description=Elicitin-like protein SOL5 [Source:UniProtKB/TrEMBL%3BAcc:Q2N053];external_name=estExt_fgenesh1_pg.C_960052;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 209549 210099 . - . ID=Physo141288;Parent=Physo141288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 209549 210076 . - 0 ID=Physo141288;Parent=Physo141288;rank=1 scaffold_96 . exon 209549 210099 . - . ID=Physo141288.1;Parent=Physo141288;constitutive=1;ensembl_phase=-1;rank=1 scaffold_96 ensembl protein_coding_gene 211095 212565 . - . ID=Physo141289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960053;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 211095 212565 . - . ID=Physo141289;Parent=Physo141289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 211095 212266 . - . ID=Physo141289.2;Parent=Physo141289;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_96 . CDS 211292 212266 . - 0 ID=Physo141289;Parent=Physo141289;rank=2 scaffold_96 . CDS 212467 212565 . - 0 ID=Physo141289;Parent=Physo141289;rank=1 scaffold_96 . exon 212467 212565 . - . ID=Physo141289.1;Parent=Physo141289;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 218004 219115 . + . ID=Physo141290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960054;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 218004 219115 . + . ID=Physo141290;Parent=Physo141290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 218004 218051 . + 0 ID=Physo141290;Parent=Physo141290;rank=1 scaffold_96 . exon 218004 218051 . + . ID=Physo141290.1;Parent=Physo141290;constitutive=1;rank=1 scaffold_96 . CDS 218125 218254 . + 0 ID=Physo141290;Parent=Physo141290;rank=2 scaffold_96 . exon 218125 218254 . + . ID=Physo141290.2;Parent=Physo141290;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_96 . CDS 218325 218526 . + 0 ID=Physo141290;Parent=Physo141290;rank=3 scaffold_96 . exon 218325 218526 . + . ID=Physo141290.3;Parent=Physo141290;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_96 . CDS 218859 218928 . + 0 ID=Physo141290;Parent=Physo141290;rank=4 scaffold_96 . exon 218859 218928 . + . ID=Physo141290.4;Parent=Physo141290;constitutive=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 218993 219115 . + 0 ID=Physo141290;Parent=Physo141290;rank=5 scaffold_96 . exon 218993 219115 . + . ID=Physo141290.5;Parent=Physo141290;constitutive=1;rank=5 scaffold_96 ensembl protein_coding_gene 220756 222579 . - . ID=Physo141291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960055;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 220756 222579 . - . ID=Physo141291;Parent=Physo141291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 220756 221086 . - 0 ID=Physo141291;Parent=Physo141291;rank=4 scaffold_96 . exon 220756 221086 . - . ID=Physo141291.4;Parent=Physo141291;constitutive=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 221243 221631 . - 0 ID=Physo141291;Parent=Physo141291;rank=3 scaffold_96 . exon 221243 221631 . - . ID=Physo141291.3;Parent=Physo141291;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_96 . CDS 221942 222238 . - 0 ID=Physo141291;Parent=Physo141291;rank=2 scaffold_96 . exon 221942 222238 . - . ID=Physo141291.2;Parent=Physo141291;constitutive=1;rank=2 scaffold_96 . CDS 222574 222579 . - 0 ID=Physo141291;Parent=Physo141291;rank=1 scaffold_96 . exon 222574 222579 . - . ID=Physo141291.1;Parent=Physo141291;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 222707 227663 . + . ID=Physo141292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960056;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 222707 227663 . + . ID=Physo141292;Parent=Physo141292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 222707 224755 . + 0 ID=Physo141292;Parent=Physo141292;rank=1 scaffold_96 . exon 222707 224755 . + . ID=Physo141292.1;Parent=Physo141292;constitutive=1;rank=1 scaffold_96 . CDS 224823 225984 . + 0 ID=Physo141292;Parent=Physo141292;rank=2 scaffold_96 . exon 224823 225984 . + . ID=Physo141292.2;Parent=Physo141292;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_96 . CDS 226201 226548 . + 0 ID=Physo141292;Parent=Physo141292;rank=3 scaffold_96 . CDS 226605 227523 . + 0 ID=Physo141292;Parent=Physo141292;rank=4 scaffold_96 . CDS 227627 227663 . + 0 ID=Physo141292;Parent=Physo141292;rank=5 scaffold_96 . repeat_region 225695 225800 . + . description=Gypsy-2-I_PI-int scaffold_96 . repeat_region 226616 227001 . + . description=Gypsy-2-I_PI-int scaffold_96 . biological_region 228550 228551 0.999 + . logic_name=eponine scaffold_96 . biological_region 228769 228771 0.999 - . logic_name=eponine scaffold_96 . biological_region 229641 229644 0.999 + . logic_name=eponine scaffold_96 . repeat_region 229866 229873 . ? . description=dust scaffold_96 . repeat_region 232232 232311 . ? . description=trf scaffold_96 . repeat_region 232735 232758 . ? . description=dust scaffold_96 . repeat_region 232739 232758 . ? . description=trf scaffold_96 . exon 226201 226548 . + . ID=Physo141292.3;Parent=Physo141292;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_96 . exon 226605 227523 . + . ID=Physo141292.4;Parent=Physo141292;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_96 . exon 227627 227663 . + . ID=Physo141292.5;Parent=Physo141292;constitutive=1;ensembl_phase=2;rank=5 scaffold_96 ensembl protein_coding_gene 227861 229851 . - . ID=Physo141293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960057;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 227861 229851 . - . ID=Physo141293;Parent=Physo141293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 227861 228123 . - 0 ID=Physo141293;Parent=Physo141293;rank=6 scaffold_96 . exon 227861 228123 . - . ID=Physo141293.6;Parent=Physo141293;constitutive=1;ensembl_phase=1;rank=6 scaffold_96 . CDS 228268 228359 . - 0 ID=Physo141293;Parent=Physo141293;rank=5 scaffold_96 . exon 228268 228359 . - . ID=Physo141293.5;Parent=Physo141293;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_96 . CDS 228420 229019 . - 0 ID=Physo141293;Parent=Physo141293;rank=4 scaffold_96 . exon 228420 229019 . - . ID=Physo141293.4;Parent=Physo141293;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_96 . CDS 229048 229211 . - 0 ID=Physo141293;Parent=Physo141293;rank=3 scaffold_96 . exon 229048 229211 . - . ID=Physo141293.3;Parent=Physo141293;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_96 . CDS 229233 229581 . - 0 ID=Physo141293;Parent=Physo141293;rank=2 scaffold_96 . exon 229233 229581 . - . ID=Physo141293.2;Parent=Physo141293;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 229610 229851 . - 0 ID=Physo141293;Parent=Physo141293;rank=1 scaffold_96 . exon 229610 229851 . - . ID=Physo141293.1;Parent=Physo141293;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 ensembl protein_coding_gene 242753 243105 . - . ID=Physo141294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960058;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 242753 243105 . - . ID=Physo141294;Parent=Physo141294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 242753 242776 . - 0 ID=Physo141294;Parent=Physo141294;rank=2 scaffold_96 . exon 242753 242776 . - . ID=Physo141294.2;Parent=Physo141294;constitutive=1;rank=2 scaffold_96 . CDS 242803 243105 . - 0 ID=Physo141294;Parent=Physo141294;rank=1 scaffold_96 . exon 242803 243105 . - . ID=Physo141294.1;Parent=Physo141294;constitutive=1;rank=1 scaffold_96 . repeat_region 245015 245026 . ? . description=dust scaffold_96 . biological_region 250827 250832 0.999 + . logic_name=eponine scaffold_96 . biological_region 252486 252487 0.999 + . logic_name=eponine scaffold_96 . biological_region 253006 253006 0.999 - . logic_name=eponine scaffold_96 . repeat_region 253192 253214 . ? . description=trf scaffold_96 . biological_region 254022 254026 0.999 + . logic_name=eponine scaffold_96 . biological_region 254045 254051 0.999 + . logic_name=eponine scaffold_96 . biological_region 254080 254083 0.999 - . logic_name=eponine scaffold_96 ensembl protein_coding_gene 245699 247075 . + . ID=Physo141295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960059;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 245699 247075 . + . ID=Physo141295;Parent=Physo141295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 245699 245767 . + 0 ID=Physo141295;Parent=Physo141295;rank=1 scaffold_96 . exon 245699 245767 . + . ID=Physo141295.1;Parent=Physo141295;constitutive=1;rank=1 scaffold_96 . CDS 245854 246310 . + 0 ID=Physo141295;Parent=Physo141295;rank=2 scaffold_96 . exon 245854 246310 . + . ID=Physo141295.2;Parent=Physo141295;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_96 . CDS 246597 247075 . + 0 ID=Physo141295;Parent=Physo141295;rank=3 scaffold_96 . exon 246597 247075 . + . ID=Physo141295.3;Parent=Physo141295;constitutive=1;ensembl_phase=1;rank=3 scaffold_96 ensembl protein_coding_gene 253434 255851 . - . ID=Physo141296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960060;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 253434 255851 . - . ID=Physo141296;Parent=Physo141296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 253434 253867 . - 0 ID=Physo141296;Parent=Physo141296;rank=2 scaffold_96 . exon 253434 253867 . - . ID=Physo141296.2;Parent=Physo141296;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 254015 255851 . - 0 ID=Physo141296;Parent=Physo141296;rank=1 scaffold_96 . exon 254015 255851 . - . ID=Physo141296.1;Parent=Physo141296;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 ensembl protein_coding_gene 257077 257723 . + . ID=Physo141297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960061;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 257077 257723 . + . ID=Physo141297;Parent=Physo141297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 257077 257293 . + 0 ID=Physo141297;Parent=Physo141297;rank=1 scaffold_96 . exon 257077 257293 . + . ID=Physo141297.1;Parent=Physo141297;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . CDS 257491 257723 . + 0 ID=Physo141297;Parent=Physo141297;rank=2 scaffold_96 . exon 257491 257723 . + . ID=Physo141297.2;Parent=Physo141297;constitutive=1;ensembl_phase=1;rank=2 scaffold_96 ensembl protein_coding_gene 260787 263342 . - . ID=Physo141298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960062;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 260787 263342 . - . ID=Physo141298;Parent=Physo141298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 260787 260792 . - 0 ID=Physo141298;Parent=Physo141298;rank=4 scaffold_96 . exon 260787 260792 . - . ID=Physo141298.4;Parent=Physo141298;constitutive=1;rank=4 scaffold_96 . CDS 260974 261415 . - 0 ID=Physo141298;Parent=Physo141298;rank=3 scaffold_96 . exon 260974 261415 . - . ID=Physo141298.3;Parent=Physo141298;constitutive=1;ensembl_phase=2;rank=3 scaffold_96 . CDS 261543 261567 . - 0 ID=Physo141298;Parent=Physo141298;rank=2 scaffold_96 . exon 261543 261567 . - . ID=Physo141298.2;Parent=Physo141298;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_96 . CDS 261716 263342 . - 0 ID=Physo141298;Parent=Physo141298;rank=1 scaffold_96 . exon 261716 263342 . - . ID=Physo141298.1;Parent=Physo141298;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . biological_region 265248 265249 0.999 + . logic_name=eponine scaffold_96 . biological_region 265352 265357 0.999 - . logic_name=eponine scaffold_96 . repeat_region 268464 268476 . ? . description=dust scaffold_96 . biological_region 269490 269493 0.999 + . logic_name=eponine scaffold_96 . repeat_region 270994 271063 . ? . description=trf scaffold_96 ensembl protein_coding_gene 265185 265667 . + . ID=Physo141299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960063;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 265185 265667 . + . ID=Physo141299;Parent=Physo141299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 265185 265382 . + 0 ID=Physo141299;Parent=Physo141299;rank=1 scaffold_96 . exon 265185 265382 . + . ID=Physo141299.1;Parent=Physo141299;constitutive=1;rank=1 scaffold_96 . CDS 265470 265667 . + 0 ID=Physo141299;Parent=Physo141299;rank=2 scaffold_96 . exon 265470 265667 . + . ID=Physo141299.2;Parent=Physo141299;constitutive=1;rank=2 scaffold_96 ensembl protein_coding_gene 269207 270751 . - . ID=Physo141300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960064;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 269207 270751 . - . ID=Physo141300;Parent=Physo141300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . exon 269207 270419 . - . ID=Physo141300.2;Parent=Physo141300;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_96 . CDS 269250 270419 . - 0 ID=Physo141300;Parent=Physo141300;rank=2 scaffold_96 . CDS 270449 270751 . - 0 ID=Physo141300;Parent=Physo141300;rank=1 scaffold_96 . exon 270449 270751 . - . ID=Physo141300.1;Parent=Physo141300;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 279939 281743 . - . ID=Physo141301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960065;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 279939 281743 . - . ID=Physo141301;Parent=Physo141301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 279939 279957 . - 0 ID=Physo141301;Parent=Physo141301;rank=4 scaffold_96 . exon 279939 279957 . - . ID=Physo141301.4;Parent=Physo141301;constitutive=1;ensembl_phase=2;rank=4 scaffold_96 . CDS 280080 280308 . - 0 ID=Physo141301;Parent=Physo141301;rank=3 scaffold_96 . exon 280080 280308 . - . ID=Physo141301.3;Parent=Physo141301;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_96 . CDS 280525 280836 . - 0 ID=Physo141301;Parent=Physo141301;rank=2 scaffold_96 . exon 280525 280836 . - . ID=Physo141301.2;Parent=Physo141301;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_96 . CDS 280903 281743 . - 0 ID=Physo141301;Parent=Physo141301;rank=1 scaffold_96 . exon 280903 281743 . - . ID=Physo141301.1;Parent=Physo141301;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_96 . biological_region 286701 286703 0.999 - . logic_name=eponine scaffold_96 . biological_region 286708 286712 0.999 - . logic_name=eponine scaffold_96 . biological_region 286730 286739 0.999 - . logic_name=eponine scaffold_96 . biological_region 287254 287254 0.999 - . logic_name=eponine scaffold_96 . biological_region 287263 287270 0.999 + . logic_name=eponine scaffold_96 . biological_region 287273 287281 0.999 - . logic_name=eponine scaffold_96 . biological_region 287330 287336 0.999 + . logic_name=eponine scaffold_96 . biological_region 287514 287515 0.999 + . logic_name=eponine scaffold_96 . biological_region 287629 287630 0.999 + . logic_name=eponine scaffold_96 . repeat_region 287932 287985 . ? . description=trf scaffold_96 . repeat_region 291172 291189 . ? . description=dust scaffold_96 . repeat_region 292032 292039 . ? . description=dust scaffold_96 . repeat_region 292160 292167 . ? . description=dust scaffold_96 ensembl protein_coding_gene 286384 287715 . - . ID=Physo141302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960066;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 286384 287715 . - . ID=Physo141302;Parent=Physo141302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 286384 287715 . - 0 ID=Physo141302;Parent=Physo141302;rank=1 scaffold_96 . exon 286384 287715 . - . ID=Physo141302.1;Parent=Physo141302;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 287972 289123 . + . ID=Physo141303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960067;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 287972 289123 . + . ID=Physo141303;Parent=Physo141303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 287972 288162 . + 0 ID=Physo141303;Parent=Physo141303;rank=1 scaffold_96 . exon 287972 288162 . + . ID=Physo141303.1;Parent=Physo141303;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 . CDS 288241 288283 . + 0 ID=Physo141303;Parent=Physo141303;rank=2 scaffold_96 . exon 288241 288283 . + . ID=Physo141303.2;Parent=Physo141303;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 288325 288343 . + 0 ID=Physo141303;Parent=Physo141303;rank=3 scaffold_96 . exon 288325 288343 . + . ID=Physo141303.3;Parent=Physo141303;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_96 . CDS 288370 288417 . + 0 ID=Physo141303;Parent=Physo141303;rank=4 scaffold_96 . exon 288370 288417 . + . ID=Physo141303.4;Parent=Physo141303;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_96 . CDS 288484 288559 . + 0 ID=Physo141303;Parent=Physo141303;rank=5 scaffold_96 . exon 288484 288559 . + . ID=Physo141303.5;Parent=Physo141303;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_96 . CDS 288744 288828 . + 0 ID=Physo141303;Parent=Physo141303;rank=6 scaffold_96 . exon 288744 288828 . + . ID=Physo141303.6;Parent=Physo141303;constitutive=1;ensembl_phase=2;rank=6 scaffold_96 . CDS 288895 288965 . + 0 ID=Physo141303;Parent=Physo141303;rank=7 scaffold_96 . exon 288895 288965 . + . ID=Physo141303.7;Parent=Physo141303;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_96 . CDS 289063 289123 . + 0 ID=Physo141303;Parent=Physo141303;rank=8 scaffold_96 . exon 289063 289123 . + . ID=Physo141303.8;Parent=Physo141303;constitutive=1;ensembl_phase=2;rank=8 scaffold_96 ensembl protein_coding_gene 289401 290738 . - . ID=Physo141304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960068;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 289401 290738 . - . ID=Physo141304;Parent=Physo141304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 289401 289760 . - 0 ID=Physo141304;Parent=Physo141304;rank=3 scaffold_96 . exon 289401 289760 . - . ID=Physo141304.3;Parent=Physo141304;constitutive=1;rank=3 scaffold_96 . CDS 289914 290558 . - 0 ID=Physo141304;Parent=Physo141304;rank=2 scaffold_96 . exon 289914 290558 . - . ID=Physo141304.2;Parent=Physo141304;constitutive=1;rank=2 scaffold_96 . CDS 290625 290738 . - 0 ID=Physo141304;Parent=Physo141304;rank=1 scaffold_96 . exon 290625 290738 . - . ID=Physo141304.1;Parent=Physo141304;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 293025 293930 . + . ID=Physo141305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960069;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 293025 293930 . + . ID=Physo141305;Parent=Physo141305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 293025 293930 . + 0 ID=Physo141305;Parent=Physo141305;rank=1 scaffold_96 . exon 293025 293930 . + . ID=Physo141305.1;Parent=Physo141305;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 294215 295574 . - . ID=Physo141306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960070;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 294215 295574 . - . ID=Physo141306;Parent=Physo141306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 294215 295390 . - 0 ID=Physo141306;Parent=Physo141306;rank=2 scaffold_96 . exon 294215 295390 . - . ID=Physo141306.2;Parent=Physo141306;constitutive=1;rank=2 scaffold_96 . CDS 295461 295574 . - 0 ID=Physo141306;Parent=Physo141306;rank=1 scaffold_96 . exon 295461 295574 . - . ID=Physo141306.1;Parent=Physo141306;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 297708 299708 . - . ID=Physo141307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960071;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 297708 299708 . - . ID=Physo141307;Parent=Physo141307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 297708 299708 . - 0 ID=Physo141307;Parent=Physo141307;rank=1 scaffold_96 . exon 297708 299708 . - . ID=Physo141307.1;Parent=Physo141307;constitutive=1;rank=1 scaffold_96 ensembl protein_coding_gene 300079 301146 . + . ID=Physo141308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960072;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 300079 301146 . + . ID=Physo141308;Parent=Physo141308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 300079 301146 . + 0 ID=Physo141308;Parent=Physo141308;rank=1 scaffold_96 . exon 300079 301146 . + . ID=Physo141308.1;Parent=Physo141308;constitutive=1;rank=1 scaffold_96 . biological_region 303714 303715 0.999 + . logic_name=eponine scaffold_96 . biological_region 303744 303747 0.999 - . logic_name=eponine scaffold_96 . biological_region 303772 303775 0.999 - . logic_name=eponine scaffold_96 . biological_region 304091 304097 0.999 + . logic_name=eponine scaffold_96 . biological_region 304188 304193 0.999 + . logic_name=eponine scaffold_96 . biological_region 304321 304322 0.999 + . logic_name=eponine scaffold_96 . biological_region 306169 306171 0.999 + . logic_name=eponine scaffold_96 . repeat_region 312905 312916 . ? . description=dust scaffold_96 ensembl protein_coding_gene 303661 304827 . - . ID=Physo109377;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_960007;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 303661 304827 . - . ID=Physo109377;Parent=Physo109377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 303661 304788 . - 0 ID=Physo109377;Parent=Physo109377;rank=1 scaffold_96 . exon 303661 304827 . - . ID=Physo109377.1;Parent=Physo109377;constitutive=1;ensembl_phase=-1;rank=1 scaffold_96 ensembl protein_coding_gene 305234 307024 . - . ID=Physo141310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960074;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 305234 307024 . - . ID=Physo141310;Parent=Physo141310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 305234 306365 . - 0 ID=Physo141310;Parent=Physo141310;rank=3 scaffold_96 . exon 305234 306365 . - . ID=Physo141310.3;Parent=Physo141310;constitutive=1;ensembl_phase=2;rank=3 scaffold_96 . CDS 306410 306838 . - 0 ID=Physo141310;Parent=Physo141310;rank=2 scaffold_96 . exon 306410 306838 . - . ID=Physo141310.2;Parent=Physo141310;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_96 . CDS 307002 307024 . - 0 ID=Physo141310;Parent=Physo141310;rank=1 scaffold_96 . exon 307002 307024 . - . ID=Physo141310.1;Parent=Physo141310;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_96 ensembl protein_coding_gene 309033 309506 . + . ID=Physo141311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960075;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 309033 309506 . + . ID=Physo141311;Parent=Physo141311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 309033 309506 . + 0 ID=Physo141311;Parent=Physo141311;rank=1 scaffold_96 . exon 309033 309506 . + . ID=Physo141311.1;Parent=Physo141311;constitutive=1;rank=1 scaffold_96 . repeat_region 322167 322967 . ? . description=trf scaffold_96 . repeat_region 322167 322967 . ? . description=trf scaffold_96 ensembl protein_coding_gene 320397 322535 . - . ID=Physo141312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_960076;logic_name=jgi_physo1_1 scaffold_96 ensembl transcript 320397 322535 . - . ID=Physo141312;Parent=Physo141312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_96 . CDS 320397 320960 . - 0 ID=Physo141312;Parent=Physo141312;rank=7 scaffold_96 . exon 320397 320960 . - . ID=Physo141312.7;Parent=Physo141312;constitutive=1;rank=7 scaffold_96 . CDS 321015 321067 . - 0 ID=Physo141312;Parent=Physo141312;rank=6 scaffold_96 . exon 321015 321067 . - . ID=Physo141312.6;Parent=Physo141312;constitutive=1;ensembl_phase=1;rank=6 scaffold_96 . CDS 321262 321693 . - 0 ID=Physo141312;Parent=Physo141312;rank=5 scaffold_96 . exon 321262 321693 . - . ID=Physo141312.5;Parent=Physo141312;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_96 . CDS 321762 321950 . - 0 ID=Physo141312;Parent=Physo141312;rank=4 scaffold_96 . exon 321762 321950 . - . ID=Physo141312.4;Parent=Physo141312;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_96 . CDS 322012 322255 . - 0 ID=Physo141312;Parent=Physo141312;rank=3 scaffold_96 . exon 322012 322255 . - . ID=Physo141312.3;Parent=Physo141312;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_96 . CDS 322277 322328 . - 0 ID=Physo141312;Parent=Physo141312;rank=2 scaffold_96 . exon 322277 322328 . - . ID=Physo141312.2;Parent=Physo141312;constitutive=1;ensembl_phase=2;rank=2 scaffold_96 . CDS 322465 322535 . - 0 ID=Physo141312;Parent=Physo141312;rank=1 scaffold_96 . exon 322465 322535 . - . ID=Physo141312.1;Parent=Physo141312;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_86 1 323535 scaffold_86 . repeat_region 1 906 . ? . description=trf scaffold_86 . repeat_region 1892 1920 . ? . description=trf scaffold_86 . repeat_region 4714 4729 . ? . description=dust scaffold_86 . repeat_region 5268 5326 . ? . description=trf scaffold_86 . repeat_region 5408 5543 . - . description=Sola3-2_PS scaffold_86 . repeat_region 5460 5468 . ? . description=dust scaffold_86 . repeat_region 5885 6131 . - . description=Sola3-2_PS scaffold_86 . repeat_region 6166 6214 . ? . description=trf scaffold_86 . repeat_region 6737 6748 . ? . description=dust scaffold_86 . biological_region 6787 6790 0.999 + . logic_name=eponine scaffold_86 . biological_region 6808 6809 0.999 + . logic_name=eponine scaffold_86 . biological_region 7852 7859 0.999 + . logic_name=eponine scaffold_86 . biological_region 7905 7909 0.999 - . logic_name=eponine scaffold_86 . biological_region 7924 7929 0.999 - . logic_name=eponine scaffold_86 . repeat_region 9419 9466 . ? . description=trf scaffold_86 . biological_region 9427 9432 0.999 + . logic_name=eponine scaffold_86 . biological_region 9581 9584 0.999 - . logic_name=eponine scaffold_86 . biological_region 9658 9659 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 7691 9038 . + . ID=Physo140463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860001;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 7691 9038 . + . ID=Physo140463;Parent=Physo140463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 7691 8515 . + 0 ID=Physo140463;Parent=Physo140463;rank=1 scaffold_86 . exon 7691 8515 . + . ID=Physo140463.1;Parent=Physo140463;constitutive=1;rank=1 scaffold_86 . CDS 8588 8655 . + 0 ID=Physo140463;Parent=Physo140463;rank=2 scaffold_86 . exon 8588 8655 . + . ID=Physo140463.2;Parent=Physo140463;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 8727 8861 . + 0 ID=Physo140463;Parent=Physo140463;rank=3 scaffold_86 . exon 8727 8861 . + . ID=Physo140463.3;Parent=Physo140463;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_86 . CDS 8924 9038 . + 0 ID=Physo140463;Parent=Physo140463;rank=4 scaffold_86 . exon 8924 9038 . + . ID=Physo140463.4;Parent=Physo140463;constitutive=1;ensembl_phase=2;rank=4 scaffold_86 ensembl protein_coding_gene 9102 9710 . - . ID=Physo140464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860002;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 9102 9710 . - . ID=Physo140464;Parent=Physo140464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 9102 9710 . - . ID=Physo140464.1;Parent=Physo140464;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 9181 9657 . - 0 ID=Physo140464;Parent=Physo140464;rank=1 scaffold_86 ensembl protein_coding_gene 10586 19927 . - . ID=Physo140465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860003;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 10586 19927 . - . ID=Physo140465;Parent=Physo140465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 10586 19927 . - 0 ID=Physo140465;Parent=Physo140465;rank=1 scaffold_86 . exon 10586 19927 . - . ID=Physo140465.1;Parent=Physo140465;constitutive=1;rank=1 scaffold_86 . biological_region 19711 19717 0.999 + . logic_name=eponine scaffold_86 . biological_region 19777 19780 0.999 + . logic_name=eponine scaffold_86 . biological_region 19817 19818 0.999 - . logic_name=eponine scaffold_86 . biological_region 19873 19876 0.999 + . logic_name=eponine scaffold_86 . biological_region 20798 20801 0.999 + . logic_name=eponine scaffold_86 . biological_region 20859 20864 0.999 - . logic_name=eponine scaffold_86 . biological_region 21321 21328 0.999 - . logic_name=eponine scaffold_86 . biological_region 21322 21325 0.999 + . logic_name=eponine scaffold_86 . biological_region 22565 22569 0.999 - . logic_name=eponine scaffold_86 . biological_region 22623 22624 0.999 + . logic_name=eponine scaffold_86 . biological_region 22752 22754 0.999 + . logic_name=eponine scaffold_86 . biological_region 22982 22983 0.999 + . logic_name=eponine scaffold_86 . biological_region 23029 23029 0.999 + . logic_name=eponine scaffold_86 . biological_region 23361 23364 0.999 - . logic_name=eponine scaffold_86 . biological_region 23730 23733 0.999 + . logic_name=eponine scaffold_86 . biological_region 24931 24935 0.999 + . logic_name=eponine scaffold_86 . biological_region 24966 24972 0.999 + . logic_name=eponine scaffold_86 . biological_region 24990 24999 0.999 - . logic_name=eponine scaffold_86 . biological_region 25049 25051 0.999 + . logic_name=eponine scaffold_86 . biological_region 27431 27433 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 20067 21018 . - . ID=Physo109294;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_860001;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 20067 21018 . - . ID=Physo109294;Parent=Physo109294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 20067 21018 . - . ID=Physo109294.1;Parent=Physo109294;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 20153 20992 . - 0 ID=Physo109294;Parent=Physo109294;rank=1 scaffold_86 ensembl protein_coding_gene 21220 22458 . + . ID=Physo140467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860005;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 21220 22458 . + . ID=Physo140467;Parent=Physo140467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 21220 21936 . + 0 ID=Physo140467;Parent=Physo140467;rank=1 scaffold_86 . exon 21220 21936 . + . ID=Physo140467.1;Parent=Physo140467;constitutive=1;rank=1 scaffold_86 . CDS 22015 22322 . + 0 ID=Physo140467;Parent=Physo140467;rank=2 scaffold_86 . exon 22015 22322 . + . ID=Physo140467.2;Parent=Physo140467;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 22437 22458 . + 0 ID=Physo140467;Parent=Physo140467;rank=3 scaffold_86 . exon 22437 22458 . + . ID=Physo140467.3;Parent=Physo140467;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 ensembl protein_coding_gene 22624 23269 . - . ID=Physo140468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860006;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 22624 23269 . - . ID=Physo140468;Parent=Physo140468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 22624 23269 . - . ID=Physo140468.1;Parent=Physo140468;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_86 . CDS 22724 23269 . - 0 ID=Physo140468;Parent=Physo140468;rank=1 scaffold_86 ensembl protein_coding_gene 24709 29428 . + . ID=Physo158151;biotype=protein_coding;external_name=C_scaffold_86000003;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 24709 29428 . + . ID=Physo158151;Parent=Physo158151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 24709 24959 . + 0 ID=Physo158151;Parent=Physo158151;rank=1 scaffold_86 . exon 24709 24959 . + . ID=Physo158151.1;Parent=Physo158151;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . CDS 24984 25353 . + 0 ID=Physo158151;Parent=Physo158151;rank=2 scaffold_86 . exon 24984 25353 . + . ID=Physo158151.2;Parent=Physo158151;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 25375 25807 . + 0 ID=Physo158151;Parent=Physo158151;rank=3 scaffold_86 . exon 25375 25807 . + . ID=Physo158151.3;Parent=Physo158151;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_86 . CDS 25880 26217 . + 0 ID=Physo158151;Parent=Physo158151;rank=4 scaffold_86 . exon 25880 26217 . + . ID=Physo158151.4;Parent=Physo158151;constitutive=1;ensembl_phase=1;rank=4 scaffold_86 . CDS 26245 26499 . + 0 ID=Physo158151;Parent=Physo158151;rank=5 scaffold_86 . exon 26245 26499 . + . ID=Physo158151.5;Parent=Physo158151;constitutive=1;rank=5 scaffold_86 . CDS 26662 26826 . + 0 ID=Physo158151;Parent=Physo158151;rank=6 scaffold_86 . exon 26662 26826 . + . ID=Physo158151.6;Parent=Physo158151;constitutive=1;rank=6 scaffold_86 . CDS 26917 27273 . + 0 ID=Physo158151;Parent=Physo158151;rank=7 scaffold_86 . exon 26917 27273 . + . ID=Physo158151.7;Parent=Physo158151;constitutive=1;rank=7 scaffold_86 . CDS 27373 27831 . + 0 ID=Physo158151;Parent=Physo158151;rank=8 scaffold_86 . exon 27373 27831 . + . ID=Physo158151.8;Parent=Physo158151;constitutive=1;rank=8 scaffold_86 . CDS 27865 28516 . + 0 ID=Physo158151;Parent=Physo158151;rank=9 scaffold_86 . exon 27865 28516 . + . ID=Physo158151.9;Parent=Physo158151;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_86 . CDS 28613 29025 . + 0 ID=Physo158151;Parent=Physo158151;rank=10 scaffold_86 . exon 28613 29025 . + . ID=Physo158151.10;Parent=Physo158151;constitutive=1;ensembl_phase=1;rank=10 scaffold_86 . CDS 29086 29327 . + 0 ID=Physo158151;Parent=Physo158151;rank=11 scaffold_86 . exon 29086 29327 . + . ID=Physo158151.11;Parent=Physo158151;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_86 . CDS 29407 29428 . + 0 ID=Physo158151;Parent=Physo158151;rank=12 scaffold_86 . exon 29407 29428 . + . ID=Physo158151.12;Parent=Physo158151;constitutive=1;ensembl_phase=2;rank=12 scaffold_86 . repeat_region 31829 31908 . ? . description=dust scaffold_86 . repeat_region 35334 35389 . ? . description=dust scaffold_86 . repeat_region 36544 36575 . ? . description=trf scaffold_86 . repeat_region 38652 38659 . ? . description=dust scaffold_86 ensembl protein_coding_gene 29646 30631 . - . ID=Physo140470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860008;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 29646 30631 . - . ID=Physo140470;Parent=Physo140470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 29646 29732 . - 0 ID=Physo140470;Parent=Physo140470;rank=2 scaffold_86 . exon 29646 29732 . - . ID=Physo140470.2;Parent=Physo140470;constitutive=1;rank=2 scaffold_86 . CDS 29933 30631 . - 0 ID=Physo140470;Parent=Physo140470;rank=1 scaffold_86 . exon 29933 30631 . - . ID=Physo140470.1;Parent=Physo140470;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 33662 35634 . - . ID=Physo140472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860010;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 33662 35634 . - . ID=Physo140472;Parent=Physo140472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 33662 35634 . - . ID=Physo140472.1;Parent=Physo140472;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_86 . CDS 33823 35634 . - 0 ID=Physo140472;Parent=Physo140472;rank=1 scaffold_86 ensembl protein_coding_gene 30854 33358 . + . ID=Physo158152;biotype=protein_coding;external_name=C_scaffold_86000004;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 30854 33358 . + . ID=Physo158152;Parent=Physo158152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 30854 30990 . + 0 ID=Physo158152;Parent=Physo158152;rank=1 scaffold_86 . exon 30854 30990 . + . ID=Physo158152.1;Parent=Physo158152;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . CDS 31081 31615 . + 0 ID=Physo158152;Parent=Physo158152;rank=2 scaffold_86 . exon 31081 31615 . + . ID=Physo158152.2;Parent=Physo158152;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 31922 33358 . + 0 ID=Physo158152;Parent=Physo158152;rank=3 scaffold_86 . exon 31922 33358 . + . ID=Physo158152.3;Parent=Physo158152;constitutive=1;rank=3 scaffold_86 ensembl protein_coding_gene 38565 40587 . + . ID=Physo158154;biotype=protein_coding;external_name=C_scaffold_86000006;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 38565 40587 . + . ID=Physo158154;Parent=Physo158154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 38565 38621 . + 0 ID=Physo158154;Parent=Physo158154;rank=1 scaffold_86 . exon 38565 38621 . + . ID=Physo158154.1;Parent=Physo158154;constitutive=1;rank=1 scaffold_86 . CDS 38732 38988 . + 0 ID=Physo158154;Parent=Physo158154;rank=2 scaffold_86 . exon 38732 38988 . + . ID=Physo158154.2;Parent=Physo158154;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 39062 39241 . + 0 ID=Physo158154;Parent=Physo158154;rank=3 scaffold_86 . exon 39062 39241 . + . ID=Physo158154.3;Parent=Physo158154;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_86 . CDS 39272 39470 . + 0 ID=Physo158154;Parent=Physo158154;rank=4 scaffold_86 . CDS 39546 39749 . + 0 ID=Physo158154;Parent=Physo158154;rank=5 scaffold_86 . CDS 39806 39836 . + 0 ID=Physo158154;Parent=Physo158154;rank=6 scaffold_86 . CDS 39888 39959 . + 0 ID=Physo158154;Parent=Physo158154;rank=7 scaffold_86 . CDS 40043 40587 . + 0 ID=Physo158154;Parent=Physo158154;rank=8 scaffold_86 . biological_region 40614 40617 0.999 - . logic_name=eponine scaffold_86 . biological_region 43369 43372 0.999 + . logic_name=eponine scaffold_86 . biological_region 43548 43556 0.999 + . logic_name=eponine scaffold_86 . biological_region 43570 43575 0.999 - . logic_name=eponine scaffold_86 . biological_region 43726 43728 0.999 - . logic_name=eponine scaffold_86 . biological_region 44842 44845 0.999 + . logic_name=eponine scaffold_86 . biological_region 47270 47274 0.999 + . logic_name=eponine scaffold_86 . biological_region 48213 48219 0.999 - . logic_name=eponine scaffold_86 . biological_region 48626 48629 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 43188 46319 . + . ID=Physo109296;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_860003;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 43188 46319 . + . ID=Physo109296;Parent=Physo109296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 43188 46319 . + 0 ID=Physo109296;Parent=Physo109296;rank=1 scaffold_86 . exon 43188 46319 . + . ID=Physo109296.1;Parent=Physo109296;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 40764 42200 . + . ID=Physo140475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860013;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 40764 42200 . + . ID=Physo140475;Parent=Physo140475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 40764 42200 . + 0 ID=Physo140475;Parent=Physo140475;rank=1 scaffold_86 . exon 40764 42200 . + . ID=Physo140475.1;Parent=Physo140475;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 47955 48491 . + . ID=Physo140477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860015;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 47955 48491 . + . ID=Physo140477;Parent=Physo140477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 47955 48491 . + 0 ID=Physo140477;Parent=Physo140477;rank=1 scaffold_86 . exon 47955 48491 . + . ID=Physo140477.1;Parent=Physo140477;constitutive=1;rank=1 scaffold_86 . exon 39272 39470 . + . ID=Physo158154.4;Parent=Physo158154;constitutive=1;ensembl_phase=2;rank=4 scaffold_86 . exon 39546 39749 . + . ID=Physo158154.5;Parent=Physo158154;constitutive=1;rank=5 scaffold_86 . exon 39806 39836 . + . ID=Physo158154.6;Parent=Physo158154;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_86 . exon 39888 39959 . + . ID=Physo158154.7;Parent=Physo158154;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_86 . exon 40043 40587 . + . ID=Physo158154.8;Parent=Physo158154;constitutive=1;ensembl_phase=1;rank=8 scaffold_86 . repeat_region 50768 50775 . ? . description=dust scaffold_86 ensembl protein_coding_gene 49128 50535 . + . ID=Physo109297;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_860004;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 49128 50535 . + . ID=Physo109297;Parent=Physo109297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 49128 49246 . + . ID=Physo109297.1;Parent=Physo109297;constitutive=1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 49202 49246 . + 0 ID=Physo109297;Parent=Physo109297;rank=1 scaffold_86 . CDS 49334 49447 . + 0 ID=Physo109297;Parent=Physo109297;rank=2 scaffold_86 . exon 49334 49447 . + . ID=Physo109297.2;Parent=Physo109297;constitutive=1;rank=2 scaffold_86 . CDS 49513 50535 . + 0 ID=Physo109297;Parent=Physo109297;rank=3 scaffold_86 . exon 49513 50535 . + . ID=Physo109297.3;Parent=Physo109297;constitutive=1;rank=3 scaffold_86 ensembl protein_coding_gene 50745 53056 . - . ID=Physo140479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860017;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 50745 53056 . - . ID=Physo140479;Parent=Physo140479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 50745 50751 . - 0 ID=Physo140479;Parent=Physo140479;rank=3 scaffold_86 . exon 50745 50751 . - . ID=Physo140479.3;Parent=Physo140479;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 50785 50854 . - 0 ID=Physo140479;Parent=Physo140479;rank=2 scaffold_86 . exon 50785 50854 . - . ID=Physo140479.2;Parent=Physo140479;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_86 . CDS 50935 53056 . - 0 ID=Physo140479;Parent=Physo140479;rank=1 scaffold_86 . exon 50935 53056 . - . ID=Physo140479.1;Parent=Physo140479;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 ensembl protein_coding_gene 53542 54764 . - . ID=Physo140480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860018;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 53542 54764 . - . ID=Physo140480;Parent=Physo140480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 53542 53928 . - 0 ID=Physo140480;Parent=Physo140480;rank=3 scaffold_86 . exon 53542 53928 . - . ID=Physo140480.3;Parent=Physo140480;constitutive=1;rank=3 scaffold_86 . CDS 53994 54618 . - 0 ID=Physo140480;Parent=Physo140480;rank=2 scaffold_86 . exon 53994 54618 . - . ID=Physo140480.2;Parent=Physo140480;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 54640 54764 . - 0 ID=Physo140480;Parent=Physo140480;rank=1 scaffold_86 . exon 54640 54764 . - . ID=Physo140480.1;Parent=Physo140480;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 ensembl protein_coding_gene 56818 60376 . - . ID=Physo140481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860019;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 56818 60376 . - . ID=Physo140481;Parent=Physo140481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 56818 56896 . - 0 ID=Physo140481;Parent=Physo140481;rank=3 scaffold_86 . exon 56818 56896 . - . ID=Physo140481.3;Parent=Physo140481;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 56960 59391 . - 0 ID=Physo140481;Parent=Physo140481;rank=2 scaffold_86 . exon 56960 59391 . - . ID=Physo140481.2;Parent=Physo140481;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 59468 60376 . - 0 ID=Physo140481;Parent=Physo140481;rank=1 scaffold_86 . biological_region 64278 64279 0.999 - . logic_name=eponine scaffold_86 . biological_region 64514 64518 0.999 + . logic_name=eponine scaffold_86 . biological_region 66190 66190 0.999 + . logic_name=eponine scaffold_86 . biological_region 68501 68502 0.999 - . logic_name=eponine scaffold_86 . exon 59468 60376 . - . ID=Physo140481.1;Parent=Physo140481;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 61724 62272 . + . ID=Physo140482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860020;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 61724 62272 . + . ID=Physo140482;Parent=Physo140482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 61724 62130 . + 0 ID=Physo140482;Parent=Physo140482;rank=1 scaffold_86 . exon 61724 62130 . + . ID=Physo140482.1;Parent=Physo140482;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . CDS 62194 62272 . + 0 ID=Physo140482;Parent=Physo140482;rank=2 scaffold_86 . exon 62194 62272 . + . ID=Physo140482.2;Parent=Physo140482;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 ensembl protein_coding_gene 64042 65268 . - . ID=Physo140483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860021;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 64042 65268 . - . ID=Physo140483;Parent=Physo140483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 64042 64419 . - 0 ID=Physo140483;Parent=Physo140483;rank=3 scaffold_86 . exon 64042 64419 . - . ID=Physo140483.3;Parent=Physo140483;constitutive=1;rank=3 scaffold_86 . CDS 64597 65122 . - 0 ID=Physo140483;Parent=Physo140483;rank=2 scaffold_86 . exon 64597 65122 . - . ID=Physo140483.2;Parent=Physo140483;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 65144 65268 . - 0 ID=Physo140483;Parent=Physo140483;rank=1 scaffold_86 . exon 65144 65268 . - . ID=Physo140483.1;Parent=Physo140483;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 ensembl protein_coding_gene 68090 68611 . - . ID=Physo140484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860022;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 68090 68611 . - . ID=Physo140484;Parent=Physo140484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 68090 68611 . - . ID=Physo140484.1;Parent=Physo140484;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_86 . CDS 68252 68611 . - 0 ID=Physo140484;Parent=Physo140484;rank=1 scaffold_86 . repeat_region 73700 73837 . ? . description=trf scaffold_86 . repeat_region 75951 76006 . ? . description=dust scaffold_86 . repeat_region 76268 76305 . ? . description=trf scaffold_86 ensembl protein_coding_gene 77276 78919 . - . ID=Physo109298;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_860005;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 77276 78919 . - . ID=Physo109298;Parent=Physo109298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 77276 77652 . - . ID=Physo109298.3;Parent=Physo109298;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_86 . CDS 77409 77652 . - 0 ID=Physo109298;Parent=Physo109298;rank=3 scaffold_86 . CDS 77734 78698 . - 0 ID=Physo109298;Parent=Physo109298;rank=2 scaffold_86 . exon 77734 78698 . - . ID=Physo109298.2;Parent=Physo109298;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 78767 78856 . - 0 ID=Physo109298;Parent=Physo109298;rank=1 scaffold_86 ensembl protein_coding_gene 71360 74621 . - . ID=Physo140485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860023;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 71360 74621 . - . ID=Physo140485;Parent=Physo140485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 71360 72446 . - 0 ID=Physo140485;Parent=Physo140485;rank=4 scaffold_86 . exon 71360 72446 . - . ID=Physo140485.4;Parent=Physo140485;constitutive=1;ensembl_phase=2;rank=4 scaffold_86 . CDS 72537 73107 . - 0 ID=Physo140485;Parent=Physo140485;rank=3 scaffold_86 . exon 72537 73107 . - . ID=Physo140485.3;Parent=Physo140485;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_86 . CDS 73317 74393 . - 0 ID=Physo140485;Parent=Physo140485;rank=2 scaffold_86 . exon 73317 74393 . - . ID=Physo140485.2;Parent=Physo140485;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_86 . CDS 74456 74621 . - 0 ID=Physo140485;Parent=Physo140485;rank=1 scaffold_86 . exon 74456 74621 . - . ID=Physo140485.1;Parent=Physo140485;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 ensembl protein_coding_gene 75170 76946 . - . ID=Physo140486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860024;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 75170 76946 . - . ID=Physo140486;Parent=Physo140486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 75170 75570 . - 0 ID=Physo140486;Parent=Physo140486;rank=6 scaffold_86 . exon 75170 75570 . - . ID=Physo140486.6;Parent=Physo140486;constitutive=1;ensembl_phase=1;rank=6 scaffold_86 . CDS 75650 75942 . - 0 ID=Physo140486;Parent=Physo140486;rank=5 scaffold_86 . exon 75650 75942 . - . ID=Physo140486.5;Parent=Physo140486;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_86 . CDS 76025 76034 . - 0 ID=Physo140486;Parent=Physo140486;rank=4 scaffold_86 . exon 76025 76034 . - . ID=Physo140486.4;Parent=Physo140486;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_86 . CDS 76062 76182 . - 0 ID=Physo140486;Parent=Physo140486;rank=3 scaffold_86 . exon 76062 76182 . - . ID=Physo140486.3;Parent=Physo140486;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_86 . CDS 76239 76527 . - 0 ID=Physo140486;Parent=Physo140486;rank=2 scaffold_86 . exon 76239 76527 . - . ID=Physo140486.2;Parent=Physo140486;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 76585 76946 . - 0 ID=Physo140486;Parent=Physo140486;rank=1 scaffold_86 . exon 76585 76946 . - . ID=Physo140486.1;Parent=Physo140486;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . biological_region 78447 78450 0.999 - . logic_name=eponine scaffold_86 . biological_region 78508 78508 0.999 + . logic_name=eponine scaffold_86 . biological_region 78724 78726 0.999 - . logic_name=eponine scaffold_86 . biological_region 82770 82771 0.999 + . logic_name=eponine scaffold_86 . biological_region 84917 84917 0.999 + . logic_name=eponine scaffold_86 . biological_region 86407 86408 0.999 - . logic_name=eponine scaffold_86 . biological_region 86778 86778 0.999 - . logic_name=eponine scaffold_86 . biological_region 87506 87510 0.999 + . logic_name=eponine scaffold_86 . exon 78767 78919 . - . ID=Physo109298.1;Parent=Physo109298;constitutive=1;ensembl_phase=-1;rank=1 scaffold_86 ensembl protein_coding_gene 80790 85882 . - . ID=Physo140488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860026;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 80790 85882 . - . ID=Physo140488;Parent=Physo140488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 80790 80802 . - 0 ID=Physo140488;Parent=Physo140488;rank=9 scaffold_86 . exon 80790 80802 . - . ID=Physo140488.9;Parent=Physo140488;constitutive=1;ensembl_phase=2;rank=9 scaffold_86 . CDS 80876 81426 . - 0 ID=Physo140488;Parent=Physo140488;rank=8 scaffold_86 . exon 80876 81426 . - . ID=Physo140488.8;Parent=Physo140488;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_86 . CDS 81487 81891 . - 0 ID=Physo140488;Parent=Physo140488;rank=7 scaffold_86 . exon 81487 81891 . - . ID=Physo140488.7;Parent=Physo140488;constitutive=1;rank=7 scaffold_86 . CDS 82024 82580 . - 0 ID=Physo140488;Parent=Physo140488;rank=6 scaffold_86 . exon 82024 82580 . - . ID=Physo140488.6;Parent=Physo140488;constitutive=1;ensembl_phase=1;rank=6 scaffold_86 . CDS 82698 82933 . - 0 ID=Physo140488;Parent=Physo140488;rank=5 scaffold_86 . exon 82698 82933 . - . ID=Physo140488.5;Parent=Physo140488;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_86 . CDS 83039 83292 . - 0 ID=Physo140488;Parent=Physo140488;rank=4 scaffold_86 . exon 83039 83292 . - . ID=Physo140488.4;Parent=Physo140488;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_86 . CDS 83363 83452 . - 0 ID=Physo140488;Parent=Physo140488;rank=3 scaffold_86 . exon 83363 83452 . - . ID=Physo140488.3;Parent=Physo140488;constitutive=1;rank=3 scaffold_86 . CDS 83491 84004 . - 0 ID=Physo140488;Parent=Physo140488;rank=2 scaffold_86 . exon 83491 84004 . - . ID=Physo140488.2;Parent=Physo140488;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 84531 85882 . - 0 ID=Physo140488;Parent=Physo140488;rank=1 scaffold_86 . exon 84531 85882 . - . ID=Physo140488.1;Parent=Physo140488;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 ensembl protein_coding_gene 86237 87592 . - . ID=Physo140489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860027;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 86237 87592 . - . ID=Physo140489;Parent=Physo140489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 86237 87592 . - 0 ID=Physo140489;Parent=Physo140489;rank=1 scaffold_86 . exon 86237 87592 . - . ID=Physo140489.1;Parent=Physo140489;constitutive=1;rank=1 scaffold_86 . repeat_region 95599 95650 . ? . description=trf scaffold_86 ensembl protein_coding_gene 89519 90394 . + . ID=Physo140490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860028;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 89519 90394 . + . ID=Physo140490;Parent=Physo140490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 89519 89710 . + 0 ID=Physo140490;Parent=Physo140490;rank=1 scaffold_86 . exon 89519 89710 . + . ID=Physo140490.1;Parent=Physo140490;constitutive=1;rank=1 scaffold_86 . CDS 89791 90129 . + 0 ID=Physo140490;Parent=Physo140490;rank=2 scaffold_86 . exon 89791 90129 . + . ID=Physo140490.2;Parent=Physo140490;constitutive=1;rank=2 scaffold_86 . CDS 90170 90394 . + 0 ID=Physo140490;Parent=Physo140490;rank=3 scaffold_86 . exon 90170 90394 . + . ID=Physo140490.3;Parent=Physo140490;constitutive=1;rank=3 scaffold_86 ensembl protein_coding_gene 91387 92754 . + . ID=Physo140491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860029;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 91387 92754 . + . ID=Physo140491;Parent=Physo140491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 91387 92754 . + 0 ID=Physo140491;Parent=Physo140491;rank=1 scaffold_86 . exon 91387 92754 . + . ID=Physo140491.1;Parent=Physo140491;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 94039 95006 . - . ID=Physo140492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860030;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 94039 95006 . - . ID=Physo140492;Parent=Physo140492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 94039 94069 . - 0 ID=Physo140492;Parent=Physo140492;rank=5 scaffold_86 . exon 94039 94069 . - . ID=Physo140492.5;Parent=Physo140492;constitutive=1;ensembl_phase=2;rank=5 scaffold_86 . CDS 94089 94293 . - 0 ID=Physo140492;Parent=Physo140492;rank=4 scaffold_86 . exon 94089 94293 . - . ID=Physo140492.4;Parent=Physo140492;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_86 . CDS 94420 94792 . - 0 ID=Physo140492;Parent=Physo140492;rank=3 scaffold_86 . exon 94420 94792 . - . ID=Physo140492.3;Parent=Physo140492;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_86 . CDS 94860 94923 . - 0 ID=Physo140492;Parent=Physo140492;rank=2 scaffold_86 . exon 94860 94923 . - . ID=Physo140492.2;Parent=Physo140492;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 94987 95006 . - 0 ID=Physo140492;Parent=Physo140492;rank=1 scaffold_86 . exon 94987 95006 . - . ID=Physo140492.1;Parent=Physo140492;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 ensembl protein_coding_gene 96302 99064 . + . ID=Physo140493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860031;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 96302 99064 . + . ID=Physo140493;Parent=Physo140493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 96302 96361 . + 0 ID=Physo140493;Parent=Physo140493;rank=1 scaffold_86 . exon 96302 96361 . + . ID=Physo140493.1;Parent=Physo140493;constitutive=1;rank=1 scaffold_86 . CDS 96463 96749 . + 0 ID=Physo140493;Parent=Physo140493;rank=2 scaffold_86 . exon 96463 96749 . + . ID=Physo140493.2;Parent=Physo140493;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 96778 97375 . + 0 ID=Physo140493;Parent=Physo140493;rank=3 scaffold_86 . exon 96778 97375 . + . ID=Physo140493.3;Parent=Physo140493;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 97495 99063 . + 0 ID=Physo140493;Parent=Physo140493;rank=4 scaffold_86 . exon 97495 99064 . + . ID=Physo140493.4;Parent=Physo140493;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_86 . biological_region 99248 99248 0.999 + . logic_name=eponine scaffold_86 . biological_region 104335 104337 0.999 + . logic_name=eponine scaffold_86 . biological_region 104460 104464 0.999 + . logic_name=eponine scaffold_86 . biological_region 104483 104486 0.999 + . logic_name=eponine scaffold_86 . biological_region 104634 104634 0.999 - . logic_name=eponine scaffold_86 . biological_region 104985 104986 0.999 + . logic_name=eponine scaffold_86 . biological_region 105073 105079 0.999 - . logic_name=eponine scaffold_86 . biological_region 105229 105233 0.999 + . logic_name=eponine scaffold_86 . biological_region 105266 105270 0.999 + . logic_name=eponine scaffold_86 . biological_region 105305 105309 0.999 - . logic_name=eponine scaffold_86 . biological_region 105306 105312 0.999 + . logic_name=eponine scaffold_86 . biological_region 105364 105366 0.999 - . logic_name=eponine scaffold_86 . biological_region 105389 105392 0.999 - . logic_name=eponine scaffold_86 . repeat_region 107172 107195 . ? . description=dust scaffold_86 . biological_region 107555 107557 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 99174 100073 . + . ID=Physo109299;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_860006;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 99174 100073 . + . ID=Physo109299;Parent=Physo109299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 99174 100073 . + 0 ID=Physo109299;Parent=Physo109299;rank=1 scaffold_86 . exon 99174 100073 . + . ID=Physo109299.1;Parent=Physo109299;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 106086 106914 . - . ID=Physo140497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860035;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 106086 106914 . - . ID=Physo140497;Parent=Physo140497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 106086 106349 . - . ID=Physo140497.3;Parent=Physo140497;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_86 . CDS 106087 106349 . - 0 ID=Physo140497;Parent=Physo140497;rank=3 scaffold_86 . CDS 106452 106558 . - 0 ID=Physo140497;Parent=Physo140497;rank=2 scaffold_86 . exon 106452 106558 . - . ID=Physo140497.2;Parent=Physo140497;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 106631 106914 . - 0 ID=Physo140497;Parent=Physo140497;rank=1 scaffold_86 . exon 106631 106914 . - . ID=Physo140497.1;Parent=Physo140497;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 ensembl protein_coding_gene 107488 107853 . + . ID=Physo140498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860036;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 107488 107853 . + . ID=Physo140498;Parent=Physo140498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 107488 107841 . + 0 ID=Physo140498;Parent=Physo140498;rank=1 scaffold_86 . exon 107488 107853 . + . ID=Physo140498.1;Parent=Physo140498;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_86 ensembl protein_coding_gene 100245 105380 . - . ID=Physo158157;biotype=protein_coding;external_name=C_scaffold_86000009;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 100245 105380 . - . ID=Physo158157;Parent=Physo158157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 100245 100759 . - 0 ID=Physo158157;Parent=Physo158157;rank=13 scaffold_86 . exon 100245 100759 . - . ID=Physo158157.13;Parent=Physo158157;constitutive=1;ensembl_phase=1;rank=13 scaffold_86 . CDS 100781 101017 . - 0 ID=Physo158157;Parent=Physo158157;rank=12 scaffold_86 . exon 100781 101017 . - . ID=Physo158157.12;Parent=Physo158157;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_86 . CDS 101099 101753 . - 0 ID=Physo158157;Parent=Physo158157;rank=11 scaffold_86 . exon 101099 101753 . - . ID=Physo158157.11;Parent=Physo158157;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_86 . CDS 101856 101928 . - 0 ID=Physo158157;Parent=Physo158157;rank=10 scaffold_86 . exon 101856 101928 . - . ID=Physo158157.10;Parent=Physo158157;constitutive=1;ensembl_phase=2;rank=10 scaffold_86 . CDS 102046 102330 . - 0 ID=Physo158157;Parent=Physo158157;rank=9 scaffold_86 . exon 102046 102330 . - . ID=Physo158157.9;Parent=Physo158157;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_86 . CDS 102565 102975 . - 0 ID=Physo158157;Parent=Physo158157;rank=8 scaffold_86 . exon 102565 102975 . - . ID=Physo158157.8;Parent=Physo158157;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_86 . CDS 103081 103381 . - 0 ID=Physo158157;Parent=Physo158157;rank=7 scaffold_86 . exon 103081 103381 . - . ID=Physo158157.7;Parent=Physo158157;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_86 . CDS 103499 103676 . - 0 ID=Physo158157;Parent=Physo158157;rank=6 scaffold_86 . exon 103499 103676 . - . ID=Physo158157.6;Parent=Physo158157;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_86 . CDS 103734 103844 . - 0 ID=Physo158157;Parent=Physo158157;rank=5 scaffold_86 . exon 103734 103844 . - . ID=Physo158157.5;Parent=Physo158157;constitutive=1;rank=5 scaffold_86 . CDS 103968 104088 . - 0 ID=Physo158157;Parent=Physo158157;rank=4 scaffold_86 . exon 103968 104088 . - . ID=Physo158157.4;Parent=Physo158157;constitutive=1;ensembl_phase=2;rank=4 scaffold_86 . CDS 104113 104317 . - 0 ID=Physo158157;Parent=Physo158157;rank=3 scaffold_86 . exon 104113 104317 . - . ID=Physo158157.3;Parent=Physo158157;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_86 . CDS 104399 104813 . - 0 ID=Physo158157;Parent=Physo158157;rank=2 scaffold_86 . exon 104399 104813 . - . ID=Physo158157.2;Parent=Physo158157;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_86 . CDS 104913 105380 . - 0 ID=Physo158157;Parent=Physo158157;rank=1 scaffold_86 . exon 104913 105380 . - . ID=Physo158157.1;Parent=Physo158157;constitutive=1;rank=1 scaffold_86 . repeat_region 108365 108388 . ? . description=trf scaffold_86 . repeat_region 111017 111046 . ? . description=trf scaffold_86 . repeat_region 112169 112222 . ? . description=trf scaffold_86 ensembl protein_coding_gene 108646 109571 . + . ID=Physo140499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860037;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 108646 109571 . + . ID=Physo140499;Parent=Physo140499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 108646 108929 . + 0 ID=Physo140499;Parent=Physo140499;rank=1 scaffold_86 . exon 108646 108929 . + . ID=Physo140499.1;Parent=Physo140499;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . CDS 109002 109108 . + 0 ID=Physo140499;Parent=Physo140499;rank=2 scaffold_86 . exon 109002 109108 . + . ID=Physo140499.2;Parent=Physo140499;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 109211 109476 . + 0 ID=Physo140499;Parent=Physo140499;rank=3 scaffold_86 . exon 109211 109571 . + . ID=Physo140499.3;Parent=Physo140499;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_86 ensembl protein_coding_gene 109570 110462 . - . ID=Physo140500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860038;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 109570 110462 . - . ID=Physo140500;Parent=Physo140500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 109570 110108 . - 0 ID=Physo140500;Parent=Physo140500;rank=2 scaffold_86 . exon 109570 110108 . - . ID=Physo140500.2;Parent=Physo140500;constitutive=1;ensembl_phase=1;rank=2 scaffold_86 . CDS 110180 110462 . - 0 ID=Physo140500;Parent=Physo140500;rank=1 scaffold_86 . exon 110180 110462 . - . ID=Physo140500.1;Parent=Physo140500;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 ensembl protein_coding_gene 112281 113744 . - . ID=Physo140501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860039;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 112281 113744 . - . ID=Physo140501;Parent=Physo140501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 112281 113744 . - 0 ID=Physo140501;Parent=Physo140501;rank=1 scaffold_86 . exon 112281 113744 . - . ID=Physo140501.1;Parent=Physo140501;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 114167 117496 . - . ID=Physo140502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860040;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 114167 117496 . - . ID=Physo140502;Parent=Physo140502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 114167 114879 . - . ID=Physo140502.6;Parent=Physo140502;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_86 . CDS 114257 114879 . - 0 ID=Physo140502;Parent=Physo140502;rank=6 scaffold_86 . CDS 115109 116195 . - 0 ID=Physo140502;Parent=Physo140502;rank=5 scaffold_86 . exon 115109 116195 . - . ID=Physo140502.5;Parent=Physo140502;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_86 . CDS 116307 116533 . - 0 ID=Physo140502;Parent=Physo140502;rank=4 scaffold_86 . exon 116307 116533 . - . ID=Physo140502.4;Parent=Physo140502;constitutive=1;ensembl_phase=1;rank=4 scaffold_86 . CDS 116609 116900 . - 0 ID=Physo140502;Parent=Physo140502;rank=3 scaffold_86 . exon 116609 116900 . - . ID=Physo140502.3;Parent=Physo140502;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_86 . CDS 116972 117121 . - 0 ID=Physo140502;Parent=Physo140502;rank=2 scaffold_86 . exon 116972 117121 . - . ID=Physo140502.2;Parent=Physo140502;constitutive=1;rank=2 scaffold_86 . CDS 117239 117496 . - 0 ID=Physo140502;Parent=Physo140502;rank=1 scaffold_86 . exon 117239 117496 . - . ID=Physo140502.1;Parent=Physo140502;constitutive=1;rank=1 scaffold_86 . biological_region 118707 118712 0.999 + . logic_name=eponine scaffold_86 . biological_region 118839 118844 0.999 + . logic_name=eponine scaffold_86 . biological_region 118903 118907 0.999 + . logic_name=eponine scaffold_86 . biological_region 118928 118931 0.999 + . logic_name=eponine scaffold_86 . biological_region 118952 118964 0.999 - . logic_name=eponine scaffold_86 . biological_region 118976 118983 0.999 - . logic_name=eponine scaffold_86 . biological_region 118996 118999 0.999 - . logic_name=eponine scaffold_86 . biological_region 119019 119022 0.999 - . logic_name=eponine scaffold_86 . biological_region 119031 119041 0.999 + . logic_name=eponine scaffold_86 . biological_region 119049 119059 0.999 - . logic_name=eponine scaffold_86 . biological_region 119051 119057 0.999 + . logic_name=eponine scaffold_86 . biological_region 119189 119193 0.999 - . logic_name=eponine scaffold_86 . biological_region 119194 119201 0.999 + . logic_name=eponine scaffold_86 . biological_region 119210 119223 0.999 - . logic_name=eponine scaffold_86 . biological_region 119245 119254 0.999 + . logic_name=eponine scaffold_86 . biological_region 126715 126717 0.999 + . logic_name=eponine scaffold_86 ensembl protein_coding_gene 118706 122512 . + . ID=Physo140503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860041;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 118706 122512 . + . ID=Physo140503;Parent=Physo140503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 118706 122512 . + 0 ID=Physo140503;Parent=Physo140503;rank=1 scaffold_86 . exon 118706 122512 . + . ID=Physo140503.1;Parent=Physo140503;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 123582 124154 . + . ID=Physo140504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860042;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 123582 124154 . + . ID=Physo140504;Parent=Physo140504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 123582 124154 . + 0 ID=Physo140504;Parent=Physo140504;rank=1 scaffold_86 . exon 123582 124154 . + . ID=Physo140504.1;Parent=Physo140504;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 125606 127465 . - . ID=Physo158160;biotype=protein_coding;external_name=C_scaffold_86000012;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 125606 127465 . - . ID=Physo158160;Parent=Physo158160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 125606 126190 . - 0 ID=Physo158160;Parent=Physo158160;rank=2 scaffold_86 . exon 125606 126190 . - . ID=Physo158160.2;Parent=Physo158160;constitutive=1;rank=2 scaffold_86 . CDS 126308 127465 . - 0 ID=Physo158160;Parent=Physo158160;rank=1 scaffold_86 . exon 126308 127465 . - . ID=Physo158160.1;Parent=Physo158160;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 129161 131778 . + . ID=Physo140506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860044;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 129161 131778 . + . ID=Physo140506;Parent=Physo140506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 129161 131611 . + 0 ID=Physo140506;Parent=Physo140506;rank=1 scaffold_86 . exon 129161 131611 . + . ID=Physo140506.1;Parent=Physo140506;constitutive=1;rank=1 scaffold_86 . CDS 131746 131778 . + 0 ID=Physo140506;Parent=Physo140506;rank=2 scaffold_86 . exon 131746 131778 . + . ID=Physo140506.2;Parent=Physo140506;constitutive=1;rank=2 scaffold_86 ensembl protein_coding_gene 133199 137757 . + . ID=Physo158161;biotype=protein_coding;external_name=C_scaffold_86000013;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 133199 137757 . + . ID=Physo158161;Parent=Physo158161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 133199 133255 . + 0 ID=Physo158161;Parent=Physo158161;rank=1 scaffold_86 . exon 133199 133255 . + . ID=Physo158161.1;Parent=Physo158161;constitutive=1;rank=1 scaffold_86 . CDS 133304 133716 . + 0 ID=Physo158161;Parent=Physo158161;rank=2 scaffold_86 . exon 133304 133716 . + . ID=Physo158161.2;Parent=Physo158161;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 133747 133832 . + 0 ID=Physo158161;Parent=Physo158161;rank=3 scaffold_86 . exon 133747 133832 . + . ID=Physo158161.3;Parent=Physo158161;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 133959 134210 . + 0 ID=Physo158161;Parent=Physo158161;rank=4 scaffold_86 . exon 133959 134210 . + . ID=Physo158161.4;Parent=Physo158161;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_86 . CDS 134361 134461 . + 0 ID=Physo158161;Parent=Physo158161;rank=5 scaffold_86 . exon 134361 134461 . + . ID=Physo158161.5;Parent=Physo158161;constitutive=1;ensembl_phase=1;rank=5 scaffold_86 . CDS 134513 135878 . + 0 ID=Physo158161;Parent=Physo158161;rank=6 scaffold_86 . exon 134513 135878 . + . ID=Physo158161.6;Parent=Physo158161;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_86 . CDS 135954 136279 . + 0 ID=Physo158161;Parent=Physo158161;rank=7 scaffold_86 . exon 135954 136279 . + . ID=Physo158161.7;Parent=Physo158161;constitutive=1;ensembl_phase=1;rank=7 scaffold_86 . CDS 136367 137111 . + 0 ID=Physo158161;Parent=Physo158161;rank=8 scaffold_86 . exon 136367 137111 . + . ID=Physo158161.8;Parent=Physo158161;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_86 . CDS 137136 137319 . + 0 ID=Physo158161;Parent=Physo158161;rank=9 scaffold_86 . exon 137136 137319 . + . ID=Physo158161.9;Parent=Physo158161;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_86 . CDS 137391 137757 . + 0 ID=Physo158161;Parent=Physo158161;rank=10 scaffold_86 . biological_region 137855 137857 0.999 + . logic_name=eponine scaffold_86 . biological_region 137905 137907 0.999 + . logic_name=eponine scaffold_86 . repeat_region 138169 138199 . ? . description=dust scaffold_86 . repeat_region 138789 138819 . ? . description=trf scaffold_86 . repeat_region 140510 140535 . ? . description=dust scaffold_86 . repeat_region 140511 140535 . ? . description=trf scaffold_86 . biological_region 141243 141246 0.999 - . logic_name=eponine scaffold_86 . biological_region 142192 142197 0.999 - . logic_name=eponine scaffold_86 . biological_region 143658 143662 0.999 + . logic_name=eponine scaffold_86 ensembl protein_coding_gene 145795 147185 . - . ID=Physo140510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860048;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 145795 147185 . - . ID=Physo140510;Parent=Physo140510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 145795 145883 . - 0 ID=Physo140510;Parent=Physo140510;rank=6 scaffold_86 . exon 145795 145883 . - . ID=Physo140510.6;Parent=Physo140510;constitutive=1;ensembl_phase=1;rank=6 scaffold_86 . CDS 145950 146016 . - 0 ID=Physo140510;Parent=Physo140510;rank=5 scaffold_86 . exon 145950 146016 . - . ID=Physo140510.5;Parent=Physo140510;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_86 . CDS 146081 146227 . - 0 ID=Physo140510;Parent=Physo140510;rank=4 scaffold_86 . exon 146081 146227 . - . ID=Physo140510.4;Parent=Physo140510;constitutive=1;rank=4 scaffold_86 . CDS 146377 146475 . - 0 ID=Physo140510;Parent=Physo140510;rank=3 scaffold_86 . exon 146377 146475 . - . ID=Physo140510.3;Parent=Physo140510;constitutive=1;rank=3 scaffold_86 . CDS 146535 146612 . - 0 ID=Physo140510;Parent=Physo140510;rank=2 scaffold_86 . exon 146535 146612 . - . ID=Physo140510.2;Parent=Physo140510;constitutive=1;rank=2 scaffold_86 . CDS 146688 147185 . - 0 ID=Physo140510;Parent=Physo140510;rank=1 scaffold_86 . exon 146688 147185 . - . ID=Physo140510.1;Parent=Physo140510;constitutive=1;rank=1 scaffold_86 . exon 137391 137757 . + . ID=Physo158161.10;Parent=Physo158161;constitutive=1;ensembl_phase=2;rank=10 scaffold_86 ensembl protein_coding_gene 141027 142238 . - . ID=Physo158162;biotype=protein_coding;external_name=C_scaffold_86000014;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 141027 142238 . - . ID=Physo158162;Parent=Physo158162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 141027 141317 . - 0 ID=Physo158162;Parent=Physo158162;rank=3 scaffold_86 . exon 141027 141317 . - . ID=Physo158162.3;Parent=Physo158162;constitutive=1;rank=3 scaffold_86 . CDS 141380 141673 . - 0 ID=Physo158162;Parent=Physo158162;rank=2 scaffold_86 . exon 141380 141673 . - . ID=Physo158162.2;Parent=Physo158162;constitutive=1;rank=2 scaffold_86 . CDS 141759 142238 . - 0 ID=Physo158162;Parent=Physo158162;rank=1 scaffold_86 . exon 141759 142238 . - . ID=Physo158162.1;Parent=Physo158162;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 142406 145816 . + . ID=Physo158163;biotype=protein_coding;external_name=C_scaffold_86000015;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 142406 145816 . + . ID=Physo158163;Parent=Physo158163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 142406 142825 . + 0 ID=Physo158163;Parent=Physo158163;rank=1 scaffold_86 . exon 142406 142825 . + . ID=Physo158163.1;Parent=Physo158163;constitutive=1;rank=1 scaffold_86 . CDS 142856 143289 . + 0 ID=Physo158163;Parent=Physo158163;rank=2 scaffold_86 . exon 142856 143289 . + . ID=Physo158163.2;Parent=Physo158163;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 143311 143980 . + 0 ID=Physo158163;Parent=Physo158163;rank=3 scaffold_86 . exon 143311 143980 . + . ID=Physo158163.3;Parent=Physo158163;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 144371 144409 . + 0 ID=Physo158163;Parent=Physo158163;rank=4 scaffold_86 . exon 144371 144409 . + . ID=Physo158163.4;Parent=Physo158163;constitutive=1;rank=4 scaffold_86 . CDS 144481 144549 . + 0 ID=Physo158163;Parent=Physo158163;rank=5 scaffold_86 . exon 144481 144549 . + . ID=Physo158163.5;Parent=Physo158163;constitutive=1;rank=5 scaffold_86 . CDS 144634 144843 . + 0 ID=Physo158163;Parent=Physo158163;rank=6 scaffold_86 . exon 144634 144843 . + . ID=Physo158163.6;Parent=Physo158163;constitutive=1;rank=6 scaffold_86 . CDS 144960 145556 . + 0 ID=Physo158163;Parent=Physo158163;rank=7 scaffold_86 . exon 144960 145556 . + . ID=Physo158163.7;Parent=Physo158163;constitutive=1;rank=7 scaffold_86 . CDS 145799 145816 . + 0 ID=Physo158163;Parent=Physo158163;rank=8 scaffold_86 . exon 145799 145816 . + . ID=Physo158163.8;Parent=Physo158163;constitutive=1;rank=8 scaffold_86 ensembl protein_coding_gene 155557 155979 . - . ID=Physo140511;biotype=protein_coding;description=PsAvh126 [Source:UniProtKB/TrEMBL%3BAcc:E0W5H4];external_name=estExt_fgenesh1_pg.C_860049;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 155557 155979 . - . ID=Physo140511;Parent=Physo140511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 155557 155979 . - 0 ID=Physo140511;Parent=Physo140511;rank=1 scaffold_86 . exon 155557 155979 . - . ID=Physo140511.1;Parent=Physo140511;constitutive=1;rank=1 scaffold_86 . biological_region 158113 158115 0.999 + . logic_name=eponine scaffold_86 . biological_region 159983 159984 0.999 + . logic_name=eponine scaffold_86 . biological_region 160075 160078 0.999 - . logic_name=eponine scaffold_86 . biological_region 162297 162303 0.999 + . logic_name=eponine scaffold_86 . biological_region 164931 164935 0.999 + . logic_name=eponine scaffold_86 ensembl protein_coding_gene 157364 159670 . + . ID=Physo140512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860050;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 157364 159670 . + . ID=Physo140512;Parent=Physo140512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 157364 159670 . + 0 ID=Physo140512;Parent=Physo140512;rank=1 scaffold_86 . exon 157364 159670 . + . ID=Physo140512.1;Parent=Physo140512;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 159865 160757 . - . ID=Physo140513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860051;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 159865 160757 . - . ID=Physo140513;Parent=Physo140513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 159865 160554 . - 0 ID=Physo140513;Parent=Physo140513;rank=2 scaffold_86 . exon 159865 160554 . - . ID=Physo140513.2;Parent=Physo140513;constitutive=1;rank=2 scaffold_86 . CDS 160710 160757 . - 0 ID=Physo140513;Parent=Physo140513;rank=1 scaffold_86 . exon 160710 160757 . - . ID=Physo140513.1;Parent=Physo140513;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 163956 165078 . + . ID=Physo140514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860052;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 163956 165078 . + . ID=Physo140514;Parent=Physo140514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 163956 164690 . + 0 ID=Physo140514;Parent=Physo140514;rank=1 scaffold_86 . exon 163956 164690 . + . ID=Physo140514.1;Parent=Physo140514;constitutive=1;rank=1 scaffold_86 . CDS 164770 165078 . + 0 ID=Physo140514;Parent=Physo140514;rank=2 scaffold_86 . exon 164770 165078 . + . ID=Physo140514.2;Parent=Physo140514;constitutive=1;rank=2 scaffold_86 ensembl protein_coding_gene 166219 166728 . + . ID=Physo140515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860053;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 166219 166728 . + . ID=Physo140515;Parent=Physo140515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 166219 166728 . + 0 ID=Physo140515;Parent=Physo140515;rank=1 scaffold_86 . exon 166219 166728 . + . ID=Physo140515.1;Parent=Physo140515;constitutive=1;rank=1 scaffold_86 . repeat_region 167782 167795 . ? . description=dust scaffold_86 . repeat_region 169153 169415 . ? . description=trf scaffold_86 . repeat_region 169377 169422 . ? . description=dust scaffold_86 . repeat_region 169377 169423 . ? . description=trf scaffold_86 . repeat_region 172468 172475 . ? . description=dust scaffold_86 . repeat_region 173818 173867 . ? . description=dust scaffold_86 . repeat_region 173873 173888 . ? . description=dust scaffold_86 ensembl tRNA_gene 172763 172832 . + . ID=EPrPSOG00000000132;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_86 ensembl transcript 172763 172832 . + . ID=EPrPSOT00000000132;Parent=EPrPSOG00000000132;biotype=tRNA;logic_name=ncrna_eg scaffold_86 . exon 172763 172832 . + . ID=EPrPSOE00000000132;Parent=EPrPSOT00000000132;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 . biological_region 178755 178758 0.999 + . logic_name=eponine scaffold_86 . biological_region 178840 178842 0.999 - . logic_name=eponine scaffold_86 . biological_region 180466 180470 0.999 + . logic_name=eponine scaffold_86 . biological_region 182992 182993 0.999 + . logic_name=eponine scaffold_86 . repeat_region 193028 193130 . ? . description=trf scaffold_86 . repeat_region 194302 194311 . ? . description=dust scaffold_86 ensembl protein_coding_gene 187018 187939 . + . ID=Physo140516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860054;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 187018 187939 . + . ID=Physo140516;Parent=Physo140516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 187018 187065 . + 0 ID=Physo140516;Parent=Physo140516;rank=1 scaffold_86 . exon 187018 187065 . + . ID=Physo140516.1;Parent=Physo140516;constitutive=1;rank=1 scaffold_86 . CDS 187202 187284 . + 0 ID=Physo140516;Parent=Physo140516;rank=2 scaffold_86 . exon 187202 187284 . + . ID=Physo140516.2;Parent=Physo140516;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 187451 187647 . + 0 ID=Physo140516;Parent=Physo140516;rank=3 scaffold_86 . exon 187451 187647 . + . ID=Physo140516.3;Parent=Physo140516;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 187779 187939 . + 0 ID=Physo140516;Parent=Physo140516;rank=4 scaffold_86 . exon 187779 187939 . + . ID=Physo140516.4;Parent=Physo140516;constitutive=1;ensembl_phase=1;rank=4 scaffold_86 . biological_region 202548 202549 0.999 + . logic_name=eponine scaffold_86 . biological_region 205339 205339 0.999 - . logic_name=eponine scaffold_86 . biological_region 205390 205394 0.999 - . logic_name=eponine scaffold_86 . biological_region 205812 205818 0.999 + . logic_name=eponine scaffold_86 ensembl protein_coding_gene 205205 207766 . + . ID=Physo140519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860057;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 205205 207766 . + . ID=Physo140519;Parent=Physo140519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 205205 207766 . + 0 ID=Physo140519;Parent=Physo140519;rank=1 scaffold_86 . exon 205205 207766 . + . ID=Physo140519.1;Parent=Physo140519;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 197865 198881 . + . ID=Physo158164;biotype=protein_coding;external_name=C_scaffold_86000016;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 197865 198881 . + . ID=Physo158164;Parent=Physo158164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 197865 198423 . + 0 ID=Physo158164;Parent=Physo158164;rank=1 scaffold_86 . exon 197865 198423 . + . ID=Physo158164.1;Parent=Physo158164;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 . CDS 198451 198567 . + 0 ID=Physo158164;Parent=Physo158164;rank=2 scaffold_86 . exon 198451 198567 . + . ID=Physo158164.2;Parent=Physo158164;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_86 . CDS 198604 198881 . + 0 ID=Physo158164;Parent=Physo158164;rank=3 scaffold_86 . exon 198604 198881 . + . ID=Physo158164.3;Parent=Physo158164;constitutive=1;ensembl_phase=1;rank=3 scaffold_86 ensembl protein_coding_gene 198957 200117 . - . ID=Physo158165;biotype=protein_coding;external_name=C_scaffold_86000017;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 198957 200117 . - . ID=Physo158165;Parent=Physo158165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 198957 199631 . - 0 ID=Physo158165;Parent=Physo158165;rank=4 scaffold_86 . exon 198957 199631 . - . ID=Physo158165.4;Parent=Physo158165;constitutive=1;rank=4 scaffold_86 . CDS 199687 199830 . - 0 ID=Physo158165;Parent=Physo158165;rank=3 scaffold_86 . exon 199687 199830 . - . ID=Physo158165.3;Parent=Physo158165;constitutive=1;rank=3 scaffold_86 . CDS 199891 199969 . - 0 ID=Physo158165;Parent=Physo158165;rank=2 scaffold_86 . exon 199891 199969 . - . ID=Physo158165.2;Parent=Physo158165;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 200038 200117 . - 0 ID=Physo158165;Parent=Physo158165;rank=1 scaffold_86 . exon 200038 200117 . - . ID=Physo158165.1;Parent=Physo158165;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . repeat_region 209945 209971 . ? . description=trf scaffold_86 . repeat_region 212352 212359 . ? . description=dust scaffold_86 . repeat_region 214141 214148 . ? . description=dust scaffold_86 ensembl protein_coding_gene 207951 210023 . + . ID=Physo140520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860058;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 207951 210023 . + . ID=Physo140520;Parent=Physo140520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 207951 210023 . + 0 ID=Physo140520;Parent=Physo140520;rank=1 scaffold_86 . exon 207951 210023 . + . ID=Physo140520.1;Parent=Physo140520;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 210009 211351 . - . ID=Physo140521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860059;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 210009 211351 . - . ID=Physo140521;Parent=Physo140521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 210009 211351 . - . ID=Physo140521.1;Parent=Physo140521;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_86 . CDS 210152 211351 . - 0 ID=Physo140521;Parent=Physo140521;rank=1 scaffold_86 ensembl protein_coding_gene 211712 212098 . + . ID=Physo140522;biotype=protein_coding;description=PsAvh262 [Source:UniProtKB/TrEMBL%3BAcc:E0W5H5];external_name=estExt_fgenesh1_pg.C_860060;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 211712 212098 . + . ID=Physo140522;Parent=Physo140522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 211712 212098 . + 0 ID=Physo140522;Parent=Physo140522;rank=1 scaffold_86 . exon 211712 212098 . + . ID=Physo140522.1;Parent=Physo140522;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 214427 216034 . + . ID=Physo140523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860061;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 214427 216034 . + . ID=Physo140523;Parent=Physo140523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 214427 214446 . + 0 ID=Physo140523;Parent=Physo140523;rank=1 scaffold_86 . exon 214427 214446 . + . ID=Physo140523.1;Parent=Physo140523;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . CDS 214701 215019 . + 0 ID=Physo140523;Parent=Physo140523;rank=2 scaffold_86 . exon 214701 215019 . + . ID=Physo140523.2;Parent=Physo140523;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 215087 216034 . + 0 ID=Physo140523;Parent=Physo140523;rank=3 scaffold_86 . exon 215087 216034 . + . ID=Physo140523.3;Parent=Physo140523;constitutive=1;rank=3 scaffold_86 . biological_region 219380 219383 0.999 - . logic_name=eponine scaffold_86 . biological_region 220141 220152 0.999 + . logic_name=eponine scaffold_86 . biological_region 220251 220257 0.999 - . logic_name=eponine scaffold_86 . repeat_region 228238 228250 . ? . description=dust scaffold_86 . repeat_region 228267 228300 . ? . description=trf scaffold_86 . repeat_region 228267 228309 . ? . description=trf scaffold_86 ensembl protein_coding_gene 226181 226884 . + . ID=Physo140524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860062;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 226181 226884 . + . ID=Physo140524;Parent=Physo140524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 226181 226884 . + . ID=Physo140524.1;Parent=Physo140524;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 226201 226647 . + 0 ID=Physo140524;Parent=Physo140524;rank=1 scaffold_86 ensembl protein_coding_gene 228995 229637 . + . ID=Physo140525;biotype=protein_coding;description=PsAvh260 [Source:UniProtKB/TrEMBL%3BAcc:E0W5H6];external_name=estExt_fgenesh1_pg.C_860063;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 228995 229637 . + . ID=Physo140525;Parent=Physo140525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 228995 229637 . + . ID=Physo140525.1;Parent=Physo140525;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 229121 229603 . + 0 ID=Physo140525;Parent=Physo140525;rank=1 scaffold_86 ensembl protein_coding_gene 229892 245542 . - . ID=Physo140526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860064;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 229892 245542 . - . ID=Physo140526;Parent=Physo140526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 229892 229912 . - 0 ID=Physo140526;Parent=Physo140526;rank=13 scaffold_86 . exon 229892 229912 . - . ID=Physo140526.13;Parent=Physo140526;constitutive=1;rank=13 scaffold_86 . CDS 230117 241519 . - 0 ID=Physo140526;Parent=Physo140526;rank=12 scaffold_86 . exon 230117 241519 . - . ID=Physo140526.12;Parent=Physo140526;constitutive=1;rank=12 scaffold_86 . CDS 241597 241826 . - 0 ID=Physo140526;Parent=Physo140526;rank=11 scaffold_86 . CDS 241892 241908 . - 0 ID=Physo140526;Parent=Physo140526;rank=10 scaffold_86 . CDS 241972 242663 . - 0 ID=Physo140526;Parent=Physo140526;rank=9 scaffold_86 . CDS 242735 242796 . - 0 ID=Physo140526;Parent=Physo140526;rank=8 scaffold_86 . CDS 242858 242950 . - 0 ID=Physo140526;Parent=Physo140526;rank=7 scaffold_86 . CDS 243025 243537 . - 0 ID=Physo140526;Parent=Physo140526;rank=6 scaffold_86 . CDS 243612 243691 . - 0 ID=Physo140526;Parent=Physo140526;rank=5 scaffold_86 . CDS 243773 244242 . - 0 ID=Physo140526;Parent=Physo140526;rank=4 scaffold_86 . CDS 244311 245013 . - 0 ID=Physo140526;Parent=Physo140526;rank=3 scaffold_86 . CDS 245098 245331 . - 0 ID=Physo140526;Parent=Physo140526;rank=2 scaffold_86 . CDS 245409 245542 . - 0 ID=Physo140526;Parent=Physo140526;rank=1 scaffold_86 . biological_region 240577 240581 0.999 - . logic_name=eponine scaffold_86 . biological_region 242136 242140 0.999 + . logic_name=eponine scaffold_86 . biological_region 242247 242248 0.999 + . logic_name=eponine scaffold_86 . exon 241597 241826 . - . ID=Physo140526.11;Parent=Physo140526;constitutive=1;ensembl_phase=1;rank=11 scaffold_86 . exon 241892 241908 . - . ID=Physo140526.10;Parent=Physo140526;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_86 . exon 241972 242663 . - . ID=Physo140526.9;Parent=Physo140526;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_86 . exon 242735 242796 . - . ID=Physo140526.8;Parent=Physo140526;constitutive=1;ensembl_phase=1;rank=8 scaffold_86 . exon 242858 242950 . - . ID=Physo140526.7;Parent=Physo140526;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_86 . exon 243025 243537 . - . ID=Physo140526.6;Parent=Physo140526;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_86 . exon 243612 243691 . - . ID=Physo140526.5;Parent=Physo140526;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_86 . exon 243773 244242 . - . ID=Physo140526.4;Parent=Physo140526;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_86 . exon 244311 245013 . - . ID=Physo140526.3;Parent=Physo140526;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 . exon 245098 245331 . - . ID=Physo140526.2;Parent=Physo140526;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_86 . repeat_region 246871 246905 . ? . description=trf scaffold_86 . repeat_region 251968 251975 . ? . description=dust scaffold_86 . repeat_region 253153 253160 . ? . description=dust scaffold_86 . repeat_region 253702 253723 . ? . description=trf scaffold_86 . repeat_region 254177 254205 . ? . description=dust scaffold_86 . repeat_region 254177 254205 . ? . description=trf scaffold_86 ensembl protein_coding_gene 246387 247072 . + . ID=Physo109300;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_860007;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 246387 247072 . + . ID=Physo109300;Parent=Physo109300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 246387 247072 . + . ID=Physo109300.1;Parent=Physo109300;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 246388 247071 . + 0 ID=Physo109300;Parent=Physo109300;rank=1 scaffold_86 ensembl protein_coding_gene 229892 245542 . - . ID=Physo140526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860064;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 229892 245542 . - . ID=Physo140526;Parent=Physo140526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 229892 229912 . - 0 ID=Physo140526;Parent=Physo140526;rank=13 scaffold_86 . CDS 230117 241519 . - 0 ID=Physo140526;Parent=Physo140526;rank=12 scaffold_86 . CDS 241597 241826 . - 0 ID=Physo140526;Parent=Physo140526;rank=11 scaffold_86 . CDS 241892 241908 . - 0 ID=Physo140526;Parent=Physo140526;rank=10 scaffold_86 . CDS 241972 242663 . - 0 ID=Physo140526;Parent=Physo140526;rank=9 scaffold_86 . CDS 242735 242796 . - 0 ID=Physo140526;Parent=Physo140526;rank=8 scaffold_86 . CDS 242858 242950 . - 0 ID=Physo140526;Parent=Physo140526;rank=7 scaffold_86 . CDS 243025 243537 . - 0 ID=Physo140526;Parent=Physo140526;rank=6 scaffold_86 . CDS 243612 243691 . - 0 ID=Physo140526;Parent=Physo140526;rank=5 scaffold_86 . CDS 243773 244242 . - 0 ID=Physo140526;Parent=Physo140526;rank=4 scaffold_86 . CDS 244311 245013 . - 0 ID=Physo140526;Parent=Physo140526;rank=3 scaffold_86 . CDS 245098 245331 . - 0 ID=Physo140526;Parent=Physo140526;rank=2 scaffold_86 . CDS 245409 245542 . - 0 ID=Physo140526;Parent=Physo140526;rank=1 scaffold_86 . exon 245409 245542 . - . ID=Physo140526.1;Parent=Physo140526;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 ensembl protein_coding_gene 247773 249043 . + . ID=Physo140528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860066;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 247773 249043 . + . ID=Physo140528;Parent=Physo140528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 247773 248082 . + 0 ID=Physo140528;Parent=Physo140528;rank=1 scaffold_86 . exon 247773 248082 . + . ID=Physo140528.1;Parent=Physo140528;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 . CDS 248111 248784 . + 0 ID=Physo140528;Parent=Physo140528;rank=2 scaffold_86 . exon 248111 248784 . + . ID=Physo140528.2;Parent=Physo140528;constitutive=1;ensembl_phase=1;rank=2 scaffold_86 . CDS 248966 249022 . + 0 ID=Physo140528;Parent=Physo140528;rank=3 scaffold_86 . exon 248966 249043 . + . ID=Physo140528.3;Parent=Physo140528;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_86 ensembl protein_coding_gene 250452 251836 . - . ID=Physo140529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860067;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 250452 251836 . - . ID=Physo140529;Parent=Physo140529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 250452 250617 . - 0 ID=Physo140529;Parent=Physo140529;rank=3 scaffold_86 . exon 250452 250617 . - . ID=Physo140529.3;Parent=Physo140529;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 250745 251414 . - 0 ID=Physo140529;Parent=Physo140529;rank=2 scaffold_86 . exon 250745 251414 . - . ID=Physo140529.2;Parent=Physo140529;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_86 . CDS 251539 251836 . - 0 ID=Physo140529;Parent=Physo140529;rank=1 scaffold_86 . exon 251539 251836 . - . ID=Physo140529.1;Parent=Physo140529;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 ensembl protein_coding_gene 252245 252634 . - . ID=Physo140530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860068;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 252245 252634 . - . ID=Physo140530;Parent=Physo140530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 252245 252471 . - 0 ID=Physo140530;Parent=Physo140530;rank=2 scaffold_86 . exon 252245 252471 . - . ID=Physo140530.2;Parent=Physo140530;constitutive=1;ensembl_phase=1;rank=2 scaffold_86 . CDS 252499 252634 . - 0 ID=Physo140530;Parent=Physo140530;rank=1 scaffold_86 . exon 252499 252634 . - . ID=Physo140530.1;Parent=Physo140530;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 . biological_region 257634 257639 0.999 + . logic_name=eponine scaffold_86 . biological_region 261778 261786 0.999 + . logic_name=eponine scaffold_86 . biological_region 261850 261857 0.999 + . logic_name=eponine scaffold_86 . biological_region 261902 261912 0.999 - . logic_name=eponine scaffold_86 . biological_region 261928 261942 0.999 - . logic_name=eponine scaffold_86 . biological_region 262623 262623 0.999 + . logic_name=eponine scaffold_86 ensembl protein_coding_gene 255031 256082 . - . ID=Physo140531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860069;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 255031 256082 . - . ID=Physo140531;Parent=Physo140531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 255031 255690 . - 0 ID=Physo140531;Parent=Physo140531;rank=2 scaffold_86 . exon 255031 255690 . - . ID=Physo140531.2;Parent=Physo140531;constitutive=1;rank=2 scaffold_86 . CDS 255720 256082 . - 0 ID=Physo140531;Parent=Physo140531;rank=1 scaffold_86 . exon 255720 256082 . - . ID=Physo140531.1;Parent=Physo140531;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 256762 257730 . - . ID=Physo140532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860070;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 256762 257730 . - . ID=Physo140532;Parent=Physo140532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 256762 256957 . - 0 ID=Physo140532;Parent=Physo140532;rank=3 scaffold_86 . exon 256762 256957 . - . ID=Physo140532.3;Parent=Physo140532;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 257059 257494 . - 0 ID=Physo140532;Parent=Physo140532;rank=2 scaffold_86 . exon 257059 257494 . - . ID=Physo140532.2;Parent=Physo140532;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_86 . CDS 257619 257730 . - 0 ID=Physo140532;Parent=Physo140532;rank=1 scaffold_86 . exon 257619 257730 . - . ID=Physo140532.1;Parent=Physo140532;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_86 ensembl protein_coding_gene 262180 263106 . + . ID=Physo140534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860072;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 262180 263106 . + . ID=Physo140534;Parent=Physo140534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 262180 262854 . + 0 ID=Physo140534;Parent=Physo140534;rank=1 scaffold_86 . exon 262180 262854 . + . ID=Physo140534.1;Parent=Physo140534;constitutive=1;rank=1 scaffold_86 . CDS 262927 263106 . + 0 ID=Physo140534;Parent=Physo140534;rank=2 scaffold_86 . exon 262927 263106 . + . ID=Physo140534.2;Parent=Physo140534;constitutive=1;rank=2 scaffold_86 ensembl protein_coding_gene 263269 265290 . - . ID=Physo140535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860073;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 263269 265290 . - . ID=Physo140535;Parent=Physo140535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 263269 263310 . - 0 ID=Physo140535;Parent=Physo140535;rank=2 scaffold_86 . exon 263269 263310 . - . ID=Physo140535.2;Parent=Physo140535;constitutive=1;rank=2 scaffold_86 . CDS 263380 265290 . - 0 ID=Physo140535;Parent=Physo140535;rank=1 scaffold_86 . exon 263380 265290 . - . ID=Physo140535.1;Parent=Physo140535;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 258463 261417 . - . ID=Physo158167;biotype=protein_coding;external_name=C_scaffold_86000019;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 258463 261417 . - . ID=Physo158167;Parent=Physo158167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 258463 258688 . - 0 ID=Physo158167;Parent=Physo158167;rank=8 scaffold_86 . exon 258463 258688 . - . ID=Physo158167.8;Parent=Physo158167;constitutive=1;ensembl_phase=2;rank=8 scaffold_86 . CDS 258827 258945 . - 0 ID=Physo158167;Parent=Physo158167;rank=7 scaffold_86 . exon 258827 258945 . - . ID=Physo158167.7;Parent=Physo158167;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_86 . CDS 259016 259215 . - 0 ID=Physo158167;Parent=Physo158167;rank=6 scaffold_86 . exon 259016 259215 . - . ID=Physo158167.6;Parent=Physo158167;constitutive=1;ensembl_phase=1;rank=6 scaffold_86 . CDS 259296 259434 . - 0 ID=Physo158167;Parent=Physo158167;rank=5 scaffold_86 . exon 259296 259434 . - . ID=Physo158167.5;Parent=Physo158167;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_86 . CDS 259506 259751 . - 0 ID=Physo158167;Parent=Physo158167;rank=4 scaffold_86 . exon 259506 259751 . - . ID=Physo158167.4;Parent=Physo158167;constitutive=1;rank=4 scaffold_86 . CDS 260439 260522 . - 0 ID=Physo158167;Parent=Physo158167;rank=3 scaffold_86 . exon 260439 260522 . - . ID=Physo158167.3;Parent=Physo158167;constitutive=1;rank=3 scaffold_86 . CDS 260796 261318 . - 0 ID=Physo158167;Parent=Physo158167;rank=2 scaffold_86 . exon 260796 261318 . - . ID=Physo158167.2;Parent=Physo158167;constitutive=1;ensembl_phase=2;rank=2 scaffold_86 . CDS 261398 261417 . - 0 ID=Physo158167;Parent=Physo158167;rank=1 scaffold_86 . exon 261398 261417 . - . ID=Physo158167.1;Parent=Physo158167;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_86 . repeat_region 267582 267591 . ? . description=dust scaffold_86 . repeat_region 274397 274444 . ? . description=trf scaffold_86 ensembl protein_coding_gene 270324 271270 . + . ID=Physo109301;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_860008;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 270324 271270 . + . ID=Physo109301;Parent=Physo109301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 270324 271130 . + 0 ID=Physo109301;Parent=Physo109301;rank=1 scaffold_86 . exon 270324 271270 . + . ID=Physo109301.1;Parent=Physo109301;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_86 ensembl protein_coding_gene 265501 266181 . - . ID=Physo140536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860074;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 265501 266181 . - . ID=Physo140536;Parent=Physo140536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 265501 266181 . - 0 ID=Physo140536;Parent=Physo140536;rank=1 scaffold_86 . exon 265501 266181 . - . ID=Physo140536.1;Parent=Physo140536;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 266425 267360 . - . ID=Physo140537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860075;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 266425 267360 . - . ID=Physo140537;Parent=Physo140537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 266425 267360 . - 0 ID=Physo140537;Parent=Physo140537;rank=1 scaffold_86 . exon 266425 267360 . - . ID=Physo140537.1;Parent=Physo140537;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 268047 268972 . + . ID=Physo140538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860076;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 268047 268972 . + . ID=Physo140538;Parent=Physo140538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 268047 268459 . + . ID=Physo140538.1;Parent=Physo140538;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 268057 268459 . + 0 ID=Physo140538;Parent=Physo140538;rank=1 scaffold_86 . CDS 268528 268809 . + 0 ID=Physo140538;Parent=Physo140538;rank=2 scaffold_86 . exon 268528 268809 . + . ID=Physo140538.2;Parent=Physo140538;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_86 . CDS 268887 268972 . + 0 ID=Physo140538;Parent=Physo140538;rank=3 scaffold_86 . exon 268887 268972 . + . ID=Physo140538.3;Parent=Physo140538;constitutive=1;ensembl_phase=1;rank=3 scaffold_86 ensembl protein_coding_gene 271598 272380 . + . ID=Physo140540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860078;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 271598 272380 . + . ID=Physo140540;Parent=Physo140540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 271598 272380 . + . ID=Physo140540.1;Parent=Physo140540;constitutive=1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 271622 272380 . + 0 ID=Physo140540;Parent=Physo140540;rank=1 scaffold_86 . biological_region 276608 276610 0.999 + . logic_name=eponine scaffold_86 . biological_region 277460 277460 0.999 - . logic_name=eponine scaffold_86 . biological_region 277489 277493 0.999 + . logic_name=eponine scaffold_86 . biological_region 277627 277633 0.999 - . logic_name=eponine scaffold_86 . biological_region 279440 279442 0.999 - . logic_name=eponine scaffold_86 . biological_region 280048 280055 0.999 - . logic_name=eponine scaffold_86 . biological_region 281665 281667 0.999 + . logic_name=eponine scaffold_86 . biological_region 281741 281744 0.999 - . logic_name=eponine scaffold_86 . biological_region 281771 281777 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 276267 278862 . - . ID=Physo140541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860079;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 276267 278862 . - . ID=Physo140541;Parent=Physo140541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 276267 276918 . - 0 ID=Physo140541;Parent=Physo140541;rank=3 scaffold_86 . exon 276267 276918 . - . ID=Physo140541.3;Parent=Physo140541;constitutive=1;ensembl_phase=2;rank=3 scaffold_86 . CDS 276960 277408 . - 0 ID=Physo140541;Parent=Physo140541;rank=2 scaffold_86 . exon 276960 277408 . - . ID=Physo140541.2;Parent=Physo140541;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_86 . CDS 277468 278862 . - 0 ID=Physo140541;Parent=Physo140541;rank=1 scaffold_86 . exon 277468 278862 . - . ID=Physo140541.1;Parent=Physo140541;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 282750 283837 . + . ID=Physo140543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860081;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 282750 283837 . + . ID=Physo140543;Parent=Physo140543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 282750 283837 . + . ID=Physo140543.1;Parent=Physo140543;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 282790 283704 . + 0 ID=Physo140543;Parent=Physo140543;rank=1 scaffold_86 . repeat_region 284699 284706 . ? . description=dust scaffold_86 . repeat_region 287327 287351 . ? . description=dust scaffold_86 . repeat_region 287402 287454 . ? . description=dust scaffold_86 . repeat_region 287402 287454 . ? . description=trf scaffold_86 . repeat_region 287402 287454 . + . description=(TGAG)n scaffold_86 ensembl protein_coding_gene 293315 294373 . - . ID=Physo109302;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_860009;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 293315 294373 . - . ID=Physo109302;Parent=Physo109302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 293315 294373 . - 0 ID=Physo109302;Parent=Physo109302;rank=1 scaffold_86 . exon 293315 294373 . - . ID=Physo109302.1;Parent=Physo109302;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 285146 286201 . + . ID=Physo140544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860082;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 285146 286201 . + . ID=Physo140544;Parent=Physo140544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 285146 286201 . + . ID=Physo140544.1;Parent=Physo140544;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_86 . CDS 285557 285973 . + 0 ID=Physo140544;Parent=Physo140544;rank=1 scaffold_86 ensembl pseudogene 286258 287314 . - . ID=Physo140546;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_860084;logic_name=jgi_physo1_1 scaffold_86 ensembl pseudogene 286258 287314 . - . ID=Physo140546;Parent=Physo140546;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_86 . exon 286258 286617 . - . ID=Physo140546.2;Parent=Physo140546;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_86 . exon 287088 287314 . - . ID=Physo140546.1;Parent=Physo140546;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_86 ensembl protein_coding_gene 288823 289610 . - . ID=Physo140547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860085;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 288823 289610 . - . ID=Physo140547;Parent=Physo140547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 288823 289244 . - . ID=Physo140547.2;Parent=Physo140547;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_86 . CDS 288825 289244 . - 0 ID=Physo140547;Parent=Physo140547;rank=2 scaffold_86 . CDS 289332 289610 . - 0 ID=Physo140547;Parent=Physo140547;rank=1 scaffold_86 . exon 289332 289610 . - . ID=Physo140547.1;Parent=Physo140547;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 292862 293191 . - . ID=Physo140548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860086;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 292862 293191 . - . ID=Physo140548;Parent=Physo140548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 292862 293191 . - 0 ID=Physo140548;Parent=Physo140548;rank=1 scaffold_86 . exon 292862 293191 . - . ID=Physo140548.1;Parent=Physo140548;constitutive=1;rank=1 scaffold_86 . biological_region 294212 294216 0.999 + . logic_name=eponine scaffold_86 . biological_region 299177 299178 0.999 + . logic_name=eponine scaffold_86 . biological_region 299198 299200 0.999 + . logic_name=eponine scaffold_86 . biological_region 299233 299237 0.999 - . logic_name=eponine scaffold_86 ensembl protein_coding_gene 294638 296938 . - . ID=Physo140550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860088;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 294638 296938 . - . ID=Physo140550;Parent=Physo140550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . exon 294638 295728 . - . ID=Physo140550.2;Parent=Physo140550;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_86 . CDS 294640 295728 . - 0 ID=Physo140550;Parent=Physo140550;rank=2 scaffold_86 . CDS 295784 296938 . - 0 ID=Physo140550;Parent=Physo140550;rank=1 scaffold_86 . exon 295784 296938 . - . ID=Physo140550.1;Parent=Physo140550;constitutive=1;rank=1 scaffold_86 ensembl protein_coding_gene 299405 300470 . + . ID=Physo140551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860089;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 299405 300470 . + . ID=Physo140551;Parent=Physo140551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 299405 300373 . + 0 ID=Physo140551;Parent=Physo140551;rank=1 scaffold_86 . exon 299405 300470 . + . ID=Physo140551.1;Parent=Physo140551;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_86 . repeat_region 301485 313471 . ? . description=dust scaffold_86 . repeat_region 313618 313646 . ? . description=trf scaffold_86 . repeat_region 313655 313687 . ? . description=trf scaffold_86 ensembl protein_coding_gene 320433 321333 . + . ID=Physo109303;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_860010;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 320433 321333 . + . ID=Physo109303;Parent=Physo109303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 320433 321269 . + 0 ID=Physo109303;Parent=Physo109303;rank=1 scaffold_86 . exon 320433 321333 . + . ID=Physo109303.1;Parent=Physo109303;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_86 ensembl protein_coding_gene 323166 323535 . + . ID=Physo140553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_860091;logic_name=jgi_physo1_1 scaffold_86 ensembl transcript 323166 323535 . + . ID=Physo140553;Parent=Physo140553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_86 . CDS 323166 323534 . + 0 ID=Physo140553;Parent=Physo140553;rank=1 scaffold_86 . exon 323166 323535 . + . ID=Physo140553.1;Parent=Physo140553;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_95 1 330242 scaffold_95 . repeat_region 3 752 . ? . description=trf scaffold_95 . repeat_region 3 752 . ? . description=trf scaffold_95 . repeat_region 6345 6365 . ? . description=trf scaffold_95 . repeat_region 7945 7957 . ? . description=dust scaffold_95 ensembl protein_coding_gene 6440 7828 . + . ID=Physo109356;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950001;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 6440 7828 . + . ID=Physo109356;Parent=Physo109356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 6440 7828 . + 0 ID=Physo109356;Parent=Physo109356;rank=1 scaffold_95 . exon 6440 7828 . + . ID=Physo109356.1;Parent=Physo109356;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 8324 9811 . - . ID=Physo109357;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950002;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 8324 9811 . - . ID=Physo109357;Parent=Physo109357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 8324 9811 . - . ID=Physo109357.1;Parent=Physo109357;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_95 . CDS 8462 9811 . - 0 ID=Physo109357;Parent=Physo109357;rank=1 scaffold_95 . biological_region 16332 16333 0.999 - . logic_name=eponine scaffold_95 . biological_region 16517 16518 0.999 - . logic_name=eponine scaffold_95 . biological_region 17945 17946 0.999 - . logic_name=eponine scaffold_95 . biological_region 18088 18092 0.999 - . logic_name=eponine scaffold_95 . biological_region 18704 18706 0.999 + . logic_name=eponine scaffold_95 . biological_region 18755 18760 0.999 + . logic_name=eponine scaffold_95 . biological_region 19061 19064 0.999 + . logic_name=eponine scaffold_95 ensembl protein_coding_gene 12508 17698 . - . ID=Physo141155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950003;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 12508 17698 . - . ID=Physo141155;Parent=Physo141155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 12508 13095 . - 0 ID=Physo141155;Parent=Physo141155;rank=9 scaffold_95 . exon 12508 13095 . - . ID=Physo141155.9;Parent=Physo141155;constitutive=1;rank=9 scaffold_95 . CDS 13179 13233 . - 0 ID=Physo141155;Parent=Physo141155;rank=8 scaffold_95 . exon 13179 13233 . - . ID=Physo141155.8;Parent=Physo141155;constitutive=1;ensembl_phase=2;rank=8 scaffold_95 . CDS 13313 13443 . - 0 ID=Physo141155;Parent=Physo141155;rank=7 scaffold_95 . exon 13313 13443 . - . ID=Physo141155.7;Parent=Physo141155;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_95 . CDS 13520 13722 . - 0 ID=Physo141155;Parent=Physo141155;rank=6 scaffold_95 . exon 13520 13722 . - . ID=Physo141155.6;Parent=Physo141155;constitutive=1;ensembl_phase=1;rank=6 scaffold_95 . CDS 13753 14065 . - 0 ID=Physo141155;Parent=Physo141155;rank=5 scaffold_95 . exon 13753 14065 . - . ID=Physo141155.5;Parent=Physo141155;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_95 . CDS 14204 15028 . - 0 ID=Physo141155;Parent=Physo141155;rank=4 scaffold_95 . exon 14204 15028 . - . ID=Physo141155.4;Parent=Physo141155;constitutive=1;rank=4 scaffold_95 . CDS 15206 17302 . - 0 ID=Physo141155;Parent=Physo141155;rank=3 scaffold_95 . exon 15206 17302 . - . ID=Physo141155.3;Parent=Physo141155;constitutive=1;rank=3 scaffold_95 . CDS 17378 17435 . - 0 ID=Physo141155;Parent=Physo141155;rank=2 scaffold_95 . exon 17378 17435 . - . ID=Physo141155.2;Parent=Physo141155;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 17517 17698 . - 0 ID=Physo141155;Parent=Physo141155;rank=1 scaffold_95 . exon 17517 17698 . - . ID=Physo141155.1;Parent=Physo141155;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 ensembl protein_coding_gene 18681 21116 . + . ID=Physo141156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950004;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 18681 21116 . + . ID=Physo141156;Parent=Physo141156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 18681 21116 . + 0 ID=Physo141156;Parent=Physo141156;rank=1 scaffold_95 . exon 18681 21116 . + . ID=Physo141156.1;Parent=Physo141156;constitutive=1;rank=1 scaffold_95 . repeat_region 26175 26182 . ? . description=dust scaffold_95 . repeat_region 27022 27066 . ? . description=dust scaffold_95 . repeat_region 27411 27422 . ? . description=dust scaffold_95 ensembl protein_coding_gene 21280 23715 . - . ID=Physo141157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950005;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 21280 23715 . - . ID=Physo141157;Parent=Physo141157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 21280 23715 . - 0 ID=Physo141157;Parent=Physo141157;rank=1 scaffold_95 . exon 21280 23715 . - . ID=Physo141157.1;Parent=Physo141157;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 29103 36010 . - . ID=Physo141158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950006;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 29103 36010 . - . ID=Physo141158;Parent=Physo141158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 29103 33540 . - 0 ID=Physo141158;Parent=Physo141158;rank=3 scaffold_95 . exon 29103 33540 . - . ID=Physo141158.3;Parent=Physo141158;constitutive=1;ensembl_phase=2;rank=3 scaffold_95 . CDS 33734 35901 . - 0 ID=Physo141158;Parent=Physo141158;rank=2 scaffold_95 . CDS 35972 36010 . - 0 ID=Physo141158;Parent=Physo141158;rank=1 scaffold_95 . biological_region 29445 29447 0.999 - . logic_name=eponine scaffold_95 . biological_region 29537 29539 0.999 - . logic_name=eponine scaffold_95 . biological_region 32237 32237 0.999 + . logic_name=eponine scaffold_95 . biological_region 33156 33157 0.999 + . logic_name=eponine scaffold_95 . biological_region 33374 33380 0.999 - . logic_name=eponine scaffold_95 . repeat_region 33978 34006 . ? . description=trf scaffold_95 . biological_region 35269 35273 0.999 + . logic_name=eponine scaffold_95 . repeat_region 36952 36979 . ? . description=trf scaffold_95 . biological_region 37605 37612 0.999 - . logic_name=eponine scaffold_95 . biological_region 37643 37648 0.999 - . logic_name=eponine scaffold_95 . biological_region 38243 38246 0.999 + . logic_name=eponine scaffold_95 . biological_region 38275 38281 0.999 + . logic_name=eponine scaffold_95 . biological_region 38432 38435 0.999 - . logic_name=eponine scaffold_95 . biological_region 38489 38490 0.999 + . logic_name=eponine scaffold_95 . biological_region 38805 38810 0.999 + . logic_name=eponine scaffold_95 . exon 33734 35901 . - . ID=Physo141158.2;Parent=Physo141158;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_95 . exon 35972 36010 . - . ID=Physo141158.1;Parent=Physo141158;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 36960 37637 . - . ID=Physo141159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950007;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 36960 37637 . - . ID=Physo141159;Parent=Physo141159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 36960 37277 . - 0 ID=Physo141159;Parent=Physo141159;rank=2 scaffold_95 . exon 36960 37277 . - . ID=Physo141159.2;Parent=Physo141159;constitutive=1;rank=2 scaffold_95 . CDS 37348 37497 . - 0 ID=Physo141159;Parent=Physo141159;rank=1 scaffold_95 . exon 37348 37637 . - . ID=Physo141159.1;Parent=Physo141159;constitutive=1;ensembl_phase=-1;rank=1 scaffold_95 ensembl protein_coding_gene 37927 39218 . + . ID=Physo141160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950008;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 37927 39218 . + . ID=Physo141160;Parent=Physo141160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 37927 39218 . + . ID=Physo141160.1;Parent=Physo141160;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_95 . CDS 38103 38897 . + 0 ID=Physo141160;Parent=Physo141160;rank=1 scaffold_95 ensembl protein_coding_gene 41904 43465 . - . ID=Physo141161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950009;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 41904 43465 . - . ID=Physo141161;Parent=Physo141161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 41904 42436 . - . ID=Physo141161.4;Parent=Physo141161;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_95 . CDS 42045 42436 . - 0 ID=Physo141161;Parent=Physo141161;rank=4 scaffold_95 . CDS 42510 43013 . - 0 ID=Physo141161;Parent=Physo141161;rank=3 scaffold_95 . exon 42510 43013 . - . ID=Physo141161.3;Parent=Physo141161;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_95 . CDS 43093 43231 . - 0 ID=Physo141161;Parent=Physo141161;rank=2 scaffold_95 . exon 43093 43231 . - . ID=Physo141161.2;Parent=Physo141161;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_95 . CDS 43323 43427 . - 0 ID=Physo141161;Parent=Physo141161;rank=1 scaffold_95 . exon 43323 43465 . - . ID=Physo141161.1;Parent=Physo141161;constitutive=1;ensembl_phase=-1;rank=1 scaffold_95 ensembl protein_coding_gene 45691 46869 . - . ID=Physo141162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950010;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 45691 46869 . - . ID=Physo141162;Parent=Physo141162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 45691 46869 . - 0 ID=Physo141162;Parent=Physo141162;rank=1 scaffold_95 . exon 45691 46869 . - . ID=Physo141162.1;Parent=Physo141162;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 47220 49759 . - . ID=Physo141163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950011;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 47220 49759 . - . ID=Physo141163;Parent=Physo141163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 47220 47270 . - 0 ID=Physo141163;Parent=Physo141163;rank=7 scaffold_95 . exon 47220 47270 . - . ID=Physo141163.7;Parent=Physo141163;constitutive=1;rank=7 scaffold_95 . CDS 47334 47480 . - 0 ID=Physo141163;Parent=Physo141163;rank=6 scaffold_95 . exon 47334 47480 . - . ID=Physo141163.6;Parent=Physo141163;constitutive=1;rank=6 scaffold_95 . CDS 47550 47632 . - 0 ID=Physo141163;Parent=Physo141163;rank=5 scaffold_95 . exon 47550 47632 . - . ID=Physo141163.5;Parent=Physo141163;constitutive=1;ensembl_phase=1;rank=5 scaffold_95 . CDS 47720 47817 . - 0 ID=Physo141163;Parent=Physo141163;rank=4 scaffold_95 . exon 47720 47817 . - . ID=Physo141163.4;Parent=Physo141163;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_95 . CDS 47994 48457 . - 0 ID=Physo141163;Parent=Physo141163;rank=3 scaffold_95 . exon 47994 48457 . - . ID=Physo141163.3;Parent=Physo141163;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_95 . CDS 48727 49194 . - 0 ID=Physo141163;Parent=Physo141163;rank=2 scaffold_95 . CDS 49313 49759 . - 0 ID=Physo141163;Parent=Physo141163;rank=1 scaffold_95 . biological_region 53936 53940 0.999 - . logic_name=eponine scaffold_95 . biological_region 53989 53998 0.999 + . logic_name=eponine scaffold_95 . repeat_region 56680 56688 . ? . description=dust scaffold_95 . repeat_region 57036 57048 . ? . description=dust scaffold_95 . exon 48727 49194 . - . ID=Physo141163.2;Parent=Physo141163;constitutive=1;rank=2 scaffold_95 . exon 49313 49759 . - . ID=Physo141163.1;Parent=Physo141163;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 52451 53939 . - . ID=Physo141164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950012;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 52451 53939 . - . ID=Physo141164;Parent=Physo141164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 52451 53939 . - . ID=Physo141164.1;Parent=Physo141164;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_95 . CDS 52558 53787 . - 0 ID=Physo141164;Parent=Physo141164;rank=1 scaffold_95 ensembl protein_coding_gene 56198 56676 . + . ID=Physo141165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950013;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 56198 56676 . + . ID=Physo141165;Parent=Physo141165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 56198 56479 . + 0 ID=Physo141165;Parent=Physo141165;rank=1 scaffold_95 . exon 56198 56479 . + . ID=Physo141165.1;Parent=Physo141165;constitutive=1;rank=1 scaffold_95 . CDS 56545 56676 . + 0 ID=Physo141165;Parent=Physo141165;rank=2 scaffold_95 . exon 56545 56676 . + . ID=Physo141165.2;Parent=Physo141165;constitutive=1;rank=2 scaffold_95 . repeat_region 64192 64317 . - . description=Sola3-2_PS scaffold_95 . repeat_region 67474 67509 . ? . description=trf scaffold_95 ensembl protein_coding_gene 60574 62348 . + . ID=Physo141166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950014;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 60574 62348 . + . ID=Physo141166;Parent=Physo141166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 60574 60677 . + 0 ID=Physo141166;Parent=Physo141166;rank=1 scaffold_95 . exon 60574 60677 . + . ID=Physo141166.1;Parent=Physo141166;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 . CDS 60756 60923 . + 0 ID=Physo141166;Parent=Physo141166;rank=2 scaffold_95 . exon 60756 60923 . + . ID=Physo141166.2;Parent=Physo141166;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_95 . CDS 61000 61506 . + 0 ID=Physo141166;Parent=Physo141166;rank=3 scaffold_95 . exon 61000 61506 . + . ID=Physo141166.3;Parent=Physo141166;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_95 . CDS 61633 61873 . + 0 ID=Physo141166;Parent=Physo141166;rank=4 scaffold_95 . exon 61633 61873 . + . ID=Physo141166.4;Parent=Physo141166;constitutive=1;ensembl_phase=2;rank=4 scaffold_95 . CDS 62052 62348 . + 0 ID=Physo141166;Parent=Physo141166;rank=5 scaffold_95 . exon 62052 62348 . + . ID=Physo141166.5;Parent=Physo141166;constitutive=1;rank=5 scaffold_95 . repeat_region 68297 68330 . ? . description=dust scaffold_95 . biological_region 74809 74812 0.999 + . logic_name=eponine scaffold_95 . biological_region 75521 75524 0.999 - . logic_name=eponine scaffold_95 ensembl protein_coding_gene 74043 75617 . + . ID=Physo141167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950015;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 74043 75617 . + . ID=Physo141167;Parent=Physo141167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 74043 74912 . + 0 ID=Physo141167;Parent=Physo141167;rank=1 scaffold_95 . exon 74043 74912 . + . ID=Physo141167.1;Parent=Physo141167;constitutive=1;rank=1 scaffold_95 . CDS 74934 75617 . + 0 ID=Physo141167;Parent=Physo141167;rank=2 scaffold_95 . exon 74934 75617 . + . ID=Physo141167.2;Parent=Physo141167;constitutive=1;rank=2 scaffold_95 ensembl protein_coding_gene 76139 80183 . + . ID=Physo141168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950016;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 76139 80183 . + . ID=Physo141168;Parent=Physo141168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 76139 76255 . + 0 ID=Physo141168;Parent=Physo141168;rank=1 scaffold_95 . exon 76139 76255 . + . ID=Physo141168.1;Parent=Physo141168;constitutive=1;rank=1 scaffold_95 . CDS 76282 79633 . + 0 ID=Physo141168;Parent=Physo141168;rank=2 scaffold_95 . exon 76282 79633 . + . ID=Physo141168.2;Parent=Physo141168;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_95 . CDS 79654 80183 . + 0 ID=Physo141168;Parent=Physo141168;rank=3 scaffold_95 . repeat_region 80647 80741 . ? . description=trf scaffold_95 . exon 79654 80183 . + . ID=Physo141168.3;Parent=Physo141168;constitutive=1;ensembl_phase=1;rank=3 scaffold_95 ensembl protein_coding_gene 82526 84578 . + . ID=Physo141169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950017;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 82526 84578 . + . ID=Physo141169;Parent=Physo141169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 82526 82576 . + 0 ID=Physo141169;Parent=Physo141169;rank=1 scaffold_95 . exon 82526 82576 . + . ID=Physo141169.1;Parent=Physo141169;constitutive=1;rank=1 scaffold_95 . CDS 82599 82654 . + 0 ID=Physo141169;Parent=Physo141169;rank=2 scaffold_95 . exon 82599 82654 . + . ID=Physo141169.2;Parent=Physo141169;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_95 . CDS 82696 82881 . + 0 ID=Physo141169;Parent=Physo141169;rank=3 scaffold_95 . exon 82696 82881 . + . ID=Physo141169.3;Parent=Physo141169;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_95 . CDS 82910 84578 . + 0 ID=Physo141169;Parent=Physo141169;rank=4 scaffold_95 . exon 82910 84578 . + . ID=Physo141169.4;Parent=Physo141169;constitutive=1;ensembl_phase=2;rank=4 scaffold_95 ensembl protein_coding_gene 85578 86563 . - . ID=Physo141170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950018;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 85578 86563 . - . ID=Physo141170;Parent=Physo141170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 85578 85679 . - 0 ID=Physo141170;Parent=Physo141170;rank=4 scaffold_95 . exon 85578 85679 . - . ID=Physo141170.4;Parent=Physo141170;constitutive=1;rank=4 scaffold_95 . CDS 85833 85923 . - 0 ID=Physo141170;Parent=Physo141170;rank=3 scaffold_95 . exon 85833 85923 . - . ID=Physo141170.3;Parent=Physo141170;constitutive=1;ensembl_phase=2;rank=3 scaffold_95 . CDS 86095 86434 . - 0 ID=Physo141170;Parent=Physo141170;rank=2 scaffold_95 . exon 86095 86434 . - . ID=Physo141170.2;Parent=Physo141170;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_95 . CDS 86539 86563 . - 0 ID=Physo141170;Parent=Physo141170;rank=1 scaffold_95 . exon 86539 86563 . - . ID=Physo141170.1;Parent=Physo141170;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . biological_region 90332 90333 0.999 + . logic_name=eponine scaffold_95 . biological_region 91397 91398 0.999 + . logic_name=eponine scaffold_95 . biological_region 91821 91825 0.999 + . logic_name=eponine scaffold_95 . biological_region 92287 92291 0.999 + . logic_name=eponine scaffold_95 . biological_region 92324 92331 0.999 - . logic_name=eponine scaffold_95 . biological_region 92380 92385 0.999 + . logic_name=eponine scaffold_95 . biological_region 92705 92707 0.999 + . logic_name=eponine scaffold_95 . repeat_region 93092 93101 . ? . description=dust scaffold_95 . biological_region 93800 93803 0.999 - . logic_name=eponine scaffold_95 . repeat_region 94871 94896 . ? . description=dust scaffold_95 . repeat_region 95356 95364 . ? . description=dust scaffold_95 ensembl protein_coding_gene 90126 92819 . - . ID=Physo141171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950019;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 90126 92819 . - . ID=Physo141171;Parent=Physo141171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 90126 92504 . - 0 ID=Physo141171;Parent=Physo141171;rank=3 scaffold_95 . exon 90126 92504 . - . ID=Physo141171.3;Parent=Physo141171;constitutive=1;rank=3 scaffold_95 . CDS 92596 92620 . - 0 ID=Physo141171;Parent=Physo141171;rank=2 scaffold_95 . exon 92596 92620 . - . ID=Physo141171.2;Parent=Physo141171;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 92737 92819 . - 0 ID=Physo141171;Parent=Physo141171;rank=1 scaffold_95 . exon 92737 92819 . - . ID=Physo141171.1;Parent=Physo141171;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 . repeat_region 101434 101704 . ? . description=trf scaffold_95 . repeat_region 101434 101767 . ? . description=trf scaffold_95 . repeat_region 104725 105009 . ? . description=trf scaffold_95 ensembl protein_coding_gene 98704 99540 . + . ID=Physo141172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950020;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 98704 99540 . + . ID=Physo141172;Parent=Physo141172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 98704 98708 . + 0 ID=Physo141172;Parent=Physo141172;rank=1 scaffold_95 . exon 98704 98708 . + . ID=Physo141172.1;Parent=Physo141172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 . CDS 98767 99115 . + 0 ID=Physo141172;Parent=Physo141172;rank=2 scaffold_95 . exon 98767 99115 . + . ID=Physo141172.2;Parent=Physo141172;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 99280 99540 . + 0 ID=Physo141172;Parent=Physo141172;rank=3 scaffold_95 . exon 99280 99540 . + . ID=Physo141172.3;Parent=Physo141172;constitutive=1;rank=3 scaffold_95 ensembl protein_coding_gene 102302 104026 . - . ID=Physo141173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950021;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 102302 104026 . - . ID=Physo141173;Parent=Physo141173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 102302 104026 . - . ID=Physo141173.1;Parent=Physo141173;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_95 . CDS 102355 103533 . - 0 ID=Physo141173;Parent=Physo141173;rank=1 scaffold_95 . biological_region 108756 108756 0.999 - . logic_name=eponine scaffold_95 . biological_region 110621 110621 0.999 + . logic_name=eponine scaffold_95 ensembl protein_coding_gene 108496 111142 . + . ID=Physo141174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950022;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 108496 111142 . + . ID=Physo141174;Parent=Physo141174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 108496 109795 . + . ID=Physo141174.1;Parent=Physo141174;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_95 . CDS 108526 109795 . + 0 ID=Physo141174;Parent=Physo141174;rank=1 scaffold_95 . CDS 109880 110226 . + 0 ID=Physo141174;Parent=Physo141174;rank=2 scaffold_95 . exon 109880 110226 . + . ID=Physo141174.2;Parent=Physo141174;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 110249 110319 . + 0 ID=Physo141174;Parent=Physo141174;rank=3 scaffold_95 . exon 110249 110319 . + . ID=Physo141174.3;Parent=Physo141174;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_95 . CDS 110434 111142 . + 0 ID=Physo141174;Parent=Physo141174;rank=4 scaffold_95 . exon 110434 111142 . + . ID=Physo141174.4;Parent=Physo141174;constitutive=1;ensembl_phase=2;rank=4 scaffold_95 ensembl protein_coding_gene 111889 112641 . - . ID=Physo158306;biotype=protein_coding;external_name=C_scaffold_95000007;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 111889 112641 . - . ID=Physo158306;Parent=Physo158306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 111889 111909 . - 0 ID=Physo158306;Parent=Physo158306;rank=3 scaffold_95 . exon 111889 111909 . - . ID=Physo158306.3;Parent=Physo158306;constitutive=1;rank=3 scaffold_95 . CDS 111941 112168 . - 0 ID=Physo158306;Parent=Physo158306;rank=2 scaffold_95 . exon 111941 112168 . - . ID=Physo158306.2;Parent=Physo158306;constitutive=1;rank=2 scaffold_95 . CDS 112229 112639 . - 0 ID=Physo158306;Parent=Physo158306;rank=1 scaffold_95 . exon 112229 112641 . - . ID=Physo158306.1;Parent=Physo158306;constitutive=1;ensembl_phase=-1;rank=1 scaffold_95 ensembl protein_coding_gene 112912 116968 . - . ID=Physo158307;biotype=protein_coding;external_name=C_scaffold_95000008;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 112912 116968 . - . ID=Physo158307;Parent=Physo158307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 112912 113095 . - 0 ID=Physo158307;Parent=Physo158307;rank=11 scaffold_95 . exon 112912 113095 . - . ID=Physo158307.11;Parent=Physo158307;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_95 . CDS 113144 113177 . - 0 ID=Physo158307;Parent=Physo158307;rank=10 scaffold_95 . exon 113144 113177 . - . ID=Physo158307.10;Parent=Physo158307;constitutive=1;ensembl_phase=2;rank=10 scaffold_95 . CDS 113295 113767 . - 0 ID=Physo158307;Parent=Physo158307;rank=9 scaffold_95 . exon 113295 113767 . - . ID=Physo158307.9;Parent=Physo158307;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_95 . CDS 113897 114214 . - 0 ID=Physo158307;Parent=Physo158307;rank=8 scaffold_95 . exon 113897 114214 . - . ID=Physo158307.8;Parent=Physo158307;constitutive=1;rank=8 scaffold_95 . CDS 114251 114285 . - 0 ID=Physo158307;Parent=Physo158307;rank=7 scaffold_95 . exon 114251 114285 . - . ID=Physo158307.7;Parent=Physo158307;constitutive=1;ensembl_phase=1;rank=7 scaffold_95 . CDS 114328 114569 . - 0 ID=Physo158307;Parent=Physo158307;rank=6 scaffold_95 . exon 114328 114569 . - . ID=Physo158307.6;Parent=Physo158307;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_95 . CDS 114744 115140 . - 0 ID=Physo158307;Parent=Physo158307;rank=5 scaffold_95 . exon 114744 115140 . - . ID=Physo158307.5;Parent=Physo158307;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_95 . CDS 115288 115705 . - 0 ID=Physo158307;Parent=Physo158307;rank=4 scaffold_95 . exon 115288 115705 . - . ID=Physo158307.4;Parent=Physo158307;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_95 . CDS 115781 115899 . - 0 ID=Physo158307;Parent=Physo158307;rank=3 scaffold_95 . exon 115781 115899 . - . ID=Physo158307.3;Parent=Physo158307;constitutive=1;ensembl_phase=1;rank=3 scaffold_95 . CDS 116005 116478 . - 0 ID=Physo158307;Parent=Physo158307;rank=2 scaffold_95 . exon 116005 116478 . - . ID=Physo158307.2;Parent=Physo158307;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 116581 116968 . - 0 ID=Physo158307;Parent=Physo158307;rank=1 scaffold_95 . repeat_region 117999 118041 . ? . description=dust scaffold_95 . repeat_region 118056 118063 . ? . description=dust scaffold_95 . repeat_region 119143 119657 . ? . description=trf scaffold_95 . repeat_region 119143 119660 . ? . description=trf scaffold_95 . repeat_region 123503 123542 . ? . description=trf scaffold_95 . repeat_region 123832 123839 . ? . description=dust scaffold_95 ensembl protein_coding_gene 117454 118467 . - . ID=Physo141176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950024;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 117454 118467 . - . ID=Physo141176;Parent=Physo141176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 117454 117929 . - 0 ID=Physo141176;Parent=Physo141176;rank=4 scaffold_95 . exon 117454 117929 . - . ID=Physo141176.4;Parent=Physo141176;constitutive=1;ensembl_phase=1;rank=4 scaffold_95 . CDS 118073 118091 . - 0 ID=Physo141176;Parent=Physo141176;rank=3 scaffold_95 . exon 118073 118091 . - . ID=Physo141176.3;Parent=Physo141176;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_95 . CDS 118236 118327 . - 0 ID=Physo141176;Parent=Physo141176;rank=2 scaffold_95 . exon 118236 118327 . - . ID=Physo141176.2;Parent=Physo141176;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 118419 118467 . - 0 ID=Physo141176;Parent=Physo141176;rank=1 scaffold_95 . exon 118419 118467 . - . ID=Physo141176.1;Parent=Physo141176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 ensembl protein_coding_gene 122847 123248 . + . ID=Physo141177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950025;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 122847 123248 . + . ID=Physo141177;Parent=Physo141177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 122847 123248 . + 0 ID=Physo141177;Parent=Physo141177;rank=1 scaffold_95 . exon 122847 123248 . + . ID=Physo141177.1;Parent=Physo141177;constitutive=1;rank=1 scaffold_95 . exon 116581 116968 . - . ID=Physo158307.1;Parent=Physo158307;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 ensembl protein_coding_gene 129851 130852 . - . ID=Physo141178;biotype=protein_coding;description=PsAvh379 [Source:UniProtKB/TrEMBL%3BAcc:E0W5J8];external_name=estExt_fgenesh1_pg.C_950026;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 129851 130852 . - . ID=Physo141178;Parent=Physo141178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 129851 130852 . - 0 ID=Physo141178;Parent=Physo141178;rank=1 scaffold_95 . exon 129851 130852 . - . ID=Physo141178.1;Parent=Physo141178;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 133902 135899 . + . ID=Physo141179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950027;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 133902 135899 . + . ID=Physo141179;Parent=Physo141179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 133902 134384 . + 0 ID=Physo141179;Parent=Physo141179;rank=1 scaffold_95 . exon 133902 134384 . + . ID=Physo141179.1;Parent=Physo141179;constitutive=1;rank=1 scaffold_95 . CDS 134531 135001 . + 0 ID=Physo141179;Parent=Physo141179;rank=2 scaffold_95 . exon 134531 135001 . + . ID=Physo141179.2;Parent=Physo141179;constitutive=1;rank=2 scaffold_95 . CDS 135044 135307 . + 0 ID=Physo141179;Parent=Physo141179;rank=3 scaffold_95 . exon 135044 135307 . + . ID=Physo141179.3;Parent=Physo141179;constitutive=1;rank=3 scaffold_95 . CDS 135405 135899 . + 0 ID=Physo141179;Parent=Physo141179;rank=4 scaffold_95 . exon 135405 135899 . + . ID=Physo141179.4;Parent=Physo141179;constitutive=1;rank=4 scaffold_95 . repeat_region 142266 142297 . ? . description=trf scaffold_95 . biological_region 142682 142683 0.999 + . logic_name=eponine scaffold_95 . repeat_region 143136 143171 . ? . description=dust scaffold_95 . repeat_region 143136 143171 . ? . description=trf scaffold_95 ensembl protein_coding_gene 138951 139456 . + . ID=Physo141180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950028;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 138951 139456 . + . ID=Physo141180;Parent=Physo141180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 138951 138975 . + 0 ID=Physo141180;Parent=Physo141180;rank=1 scaffold_95 . exon 138951 138975 . + . ID=Physo141180.1;Parent=Physo141180;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . CDS 139047 139456 . + 0 ID=Physo141180;Parent=Physo141180;rank=2 scaffold_95 . exon 139047 139456 . + . ID=Physo141180.2;Parent=Physo141180;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 ensembl protein_coding_gene 141749 142418 . - . ID=Physo141181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950029;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 141749 142418 . - . ID=Physo141181;Parent=Physo141181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 141749 142130 . - 0 ID=Physo141181;Parent=Physo141181;rank=2 scaffold_95 . exon 141749 142130 . - . ID=Physo141181.2;Parent=Physo141181;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 142264 142418 . - 0 ID=Physo141181;Parent=Physo141181;rank=1 scaffold_95 . exon 142264 142418 . - . ID=Physo141181.1;Parent=Physo141181;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 ensembl protein_coding_gene 142575 143093 . + . ID=Physo141182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950030;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 142575 143093 . + . ID=Physo141182;Parent=Physo141182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 142575 143093 . + 0 ID=Physo141182;Parent=Physo141182;rank=1 scaffold_95 . exon 142575 143093 . + . ID=Physo141182.1;Parent=Physo141182;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 144337 149859 . - . ID=Physo141183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950031;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 144337 149859 . - . ID=Physo141183;Parent=Physo141183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 144337 144345 . - 0 ID=Physo141183;Parent=Physo141183;rank=9 scaffold_95 . exon 144337 144345 . - . ID=Physo141183.9;Parent=Physo141183;constitutive=1;rank=9 scaffold_95 . CDS 144501 144544 . - 0 ID=Physo141183;Parent=Physo141183;rank=8 scaffold_95 . exon 144501 144544 . - . ID=Physo141183.8;Parent=Physo141183;constitutive=1;ensembl_phase=1;rank=8 scaffold_95 . CDS 144615 145208 . - 0 ID=Physo141183;Parent=Physo141183;rank=7 scaffold_95 . exon 144615 145208 . - . ID=Physo141183.7;Parent=Physo141183;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_95 . CDS 145530 147808 . - 0 ID=Physo141183;Parent=Physo141183;rank=6 scaffold_95 . exon 145530 147808 . - . ID=Physo141183.6;Parent=Physo141183;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_95 . CDS 147905 148479 . - 0 ID=Physo141183;Parent=Physo141183;rank=5 scaffold_95 . CDS 148549 148734 . - 0 ID=Physo141183;Parent=Physo141183;rank=4 scaffold_95 . CDS 148794 148836 . - 0 ID=Physo141183;Parent=Physo141183;rank=3 scaffold_95 . CDS 148967 149700 . - 0 ID=Physo141183;Parent=Physo141183;rank=2 scaffold_95 . CDS 149779 149859 . - 0 ID=Physo141183;Parent=Physo141183;rank=1 scaffold_95 . exon 147905 148479 . - . ID=Physo141183.5;Parent=Physo141183;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_95 . exon 148549 148734 . - . ID=Physo141183.4;Parent=Physo141183;constitutive=1;rank=4 scaffold_95 . exon 148794 148836 . - . ID=Physo141183.3;Parent=Physo141183;constitutive=1;ensembl_phase=2;rank=3 scaffold_95 . exon 148967 149700 . - . ID=Physo141183.2;Parent=Physo141183;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_95 . exon 149779 149859 . - . ID=Physo141183.1;Parent=Physo141183;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 151646 153262 . + . ID=Physo141184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950032;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 151646 153262 . + . ID=Physo141184;Parent=Physo141184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 151646 151927 . + 0 ID=Physo141184;Parent=Physo141184;rank=1 scaffold_95 . exon 151646 151927 . + . ID=Physo141184.1;Parent=Physo141184;constitutive=1;rank=1 scaffold_95 . CDS 151966 152202 . + 0 ID=Physo141184;Parent=Physo141184;rank=2 scaffold_95 . exon 151966 152202 . + . ID=Physo141184.2;Parent=Physo141184;constitutive=1;rank=2 scaffold_95 . CDS 152225 152940 . + 0 ID=Physo141184;Parent=Physo141184;rank=3 scaffold_95 . exon 152225 152940 . + . ID=Physo141184.3;Parent=Physo141184;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_95 . CDS 152977 153262 . + 0 ID=Physo141184;Parent=Physo141184;rank=4 scaffold_95 . exon 152977 153262 . + . ID=Physo141184.4;Parent=Physo141184;constitutive=1;ensembl_phase=2;rank=4 scaffold_95 . repeat_region 158268 158277 . ? . description=dust scaffold_95 . repeat_region 158781 158799 . ? . description=dust scaffold_95 . repeat_region 160351 160432 . ? . description=trf scaffold_95 ensembl protein_coding_gene 156364 157932 . + . ID=Physo141185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950033;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 156364 157932 . + . ID=Physo141185;Parent=Physo141185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 156364 157932 . + 0 ID=Physo141185;Parent=Physo141185;rank=1 scaffold_95 . exon 156364 157932 . + . ID=Physo141185.1;Parent=Physo141185;constitutive=1;rank=1 scaffold_95 . biological_region 166349 166353 0.999 + . logic_name=eponine scaffold_95 . biological_region 167182 167186 0.999 - . logic_name=eponine scaffold_95 . biological_region 169788 169789 0.999 - . logic_name=eponine scaffold_95 . biological_region 169853 169860 0.999 - . logic_name=eponine scaffold_95 . biological_region 169878 169883 0.999 - . logic_name=eponine scaffold_95 . biological_region 171333 171335 0.999 + . logic_name=eponine scaffold_95 ensembl protein_coding_gene 166651 168864 . - . ID=Physo141186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950034;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 166651 168864 . - . ID=Physo141186;Parent=Physo141186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 166651 168864 . - 0 ID=Physo141186;Parent=Physo141186;rank=1 scaffold_95 . exon 166651 168864 . - . ID=Physo141186.1;Parent=Physo141186;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 170370 172768 . + . ID=Physo141187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950035;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 170370 172768 . + . ID=Physo141187;Parent=Physo141187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 170370 170559 . + 0 ID=Physo141187;Parent=Physo141187;rank=1 scaffold_95 . exon 170370 170559 . + . ID=Physo141187.1;Parent=Physo141187;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . CDS 170613 170763 . + 0 ID=Physo141187;Parent=Physo141187;rank=2 scaffold_95 . exon 170613 170763 . + . ID=Physo141187.2;Parent=Physo141187;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_95 . CDS 170790 171670 . + 0 ID=Physo141187;Parent=Physo141187;rank=3 scaffold_95 . exon 170790 171670 . + . ID=Physo141187.3;Parent=Physo141187;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_95 . CDS 171781 172135 . + 0 ID=Physo141187;Parent=Physo141187;rank=4 scaffold_95 . exon 171781 172135 . + . ID=Physo141187.4;Parent=Physo141187;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_95 . CDS 172258 172768 . + 0 ID=Physo141187;Parent=Physo141187;rank=5 scaffold_95 . exon 172258 172768 . + . ID=Physo141187.5;Parent=Physo141187;constitutive=1;ensembl_phase=2;rank=5 scaffold_95 ensembl protein_coding_gene 174954 176689 . - . ID=Physo141188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950036;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 174954 176689 . - . ID=Physo141188;Parent=Physo141188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 174954 175404 . - 0 ID=Physo141188;Parent=Physo141188;rank=2 scaffold_95 . exon 174954 175404 . - . ID=Physo141188.2;Parent=Physo141188;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 175737 176689 . - 0 ID=Physo141188;Parent=Physo141188;rank=1 scaffold_95 . exon 175737 176689 . - . ID=Physo141188.1;Parent=Physo141188;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 . repeat_region 188930 188937 . ? . description=dust scaffold_95 ensembl protein_coding_gene 190588 192251 . + . ID=Physo141189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950037;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 190588 192251 . + . ID=Physo141189;Parent=Physo141189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 190588 190821 . + 0 ID=Physo141189;Parent=Physo141189;rank=1 scaffold_95 . exon 190588 190821 . + . ID=Physo141189.1;Parent=Physo141189;constitutive=1;rank=1 scaffold_95 . CDS 190884 192251 . + 0 ID=Physo141189;Parent=Physo141189;rank=2 scaffold_95 . exon 190884 192251 . + . ID=Physo141189.2;Parent=Physo141189;constitutive=1;rank=2 scaffold_95 ensembl protein_coding_gene 192749 194311 . + . ID=Physo141190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950038;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 192749 194311 . + . ID=Physo141190;Parent=Physo141190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 192749 192932 . + 0 ID=Physo141190;Parent=Physo141190;rank=1 scaffold_95 . exon 192749 192932 . + . ID=Physo141190.1;Parent=Physo141190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . CDS 193029 194311 . + 0 ID=Physo141190;Parent=Physo141190;rank=2 scaffold_95 . exon 193029 194311 . + . ID=Physo141190.2;Parent=Physo141190;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . biological_region 198080 198081 0.999 + . logic_name=eponine scaffold_95 . biological_region 200855 200859 0.999 + . logic_name=eponine scaffold_95 . biological_region 201578 201579 0.999 - . logic_name=eponine scaffold_95 . repeat_region 202929 203019 . ? . description=trf scaffold_95 ensembl protein_coding_gene 194462 195667 . - . ID=Physo141191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950039;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 194462 195667 . - . ID=Physo141191;Parent=Physo141191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 194462 194500 . - 0 ID=Physo141191;Parent=Physo141191;rank=3 scaffold_95 . exon 194462 194500 . - . ID=Physo141191.3;Parent=Physo141191;constitutive=1;rank=3 scaffold_95 . CDS 194620 195378 . - 0 ID=Physo141191;Parent=Physo141191;rank=2 scaffold_95 . exon 194620 195378 . - . ID=Physo141191.2;Parent=Physo141191;constitutive=1;rank=2 scaffold_95 . CDS 195454 195600 . - 0 ID=Physo141191;Parent=Physo141191;rank=1 scaffold_95 . exon 195454 195667 . - . ID=Physo141191.1;Parent=Physo141191;constitutive=1;ensembl_phase=-1;rank=1 scaffold_95 ensembl protein_coding_gene 195807 197631 . + . ID=Physo141192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950040;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 195807 197631 . + . ID=Physo141192;Parent=Physo141192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 195807 196220 . + 0 ID=Physo141192;Parent=Physo141192;rank=1 scaffold_95 . exon 195807 196220 . + . ID=Physo141192.1;Parent=Physo141192;constitutive=1;rank=1 scaffold_95 . CDS 196520 196551 . + 0 ID=Physo141192;Parent=Physo141192;rank=2 scaffold_95 . exon 196520 196551 . + . ID=Physo141192.2;Parent=Physo141192;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_95 . CDS 196637 196799 . + 0 ID=Physo141192;Parent=Physo141192;rank=3 scaffold_95 . exon 196637 196799 . + . ID=Physo141192.3;Parent=Physo141192;constitutive=1;ensembl_phase=2;rank=3 scaffold_95 . CDS 196954 197054 . + 0 ID=Physo141192;Parent=Physo141192;rank=4 scaffold_95 . exon 196954 197054 . + . ID=Physo141192.4;Parent=Physo141192;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_95 . CDS 197122 197191 . + 0 ID=Physo141192;Parent=Physo141192;rank=5 scaffold_95 . exon 197122 197191 . + . ID=Physo141192.5;Parent=Physo141192;constitutive=1;ensembl_phase=2;rank=5 scaffold_95 . CDS 197260 197352 . + 0 ID=Physo141192;Parent=Physo141192;rank=6 scaffold_95 . exon 197260 197352 . + . ID=Physo141192.6;Parent=Physo141192;constitutive=1;rank=6 scaffold_95 . CDS 197419 197631 . + 0 ID=Physo141192;Parent=Physo141192;rank=7 scaffold_95 . exon 197419 197631 . + . ID=Physo141192.7;Parent=Physo141192;constitutive=1;rank=7 scaffold_95 . repeat_region 210312 210484 . ? . description=dust scaffold_95 ensembl protein_coding_gene 206303 207501 . - . ID=Physo109358;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950003;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 206303 207501 . - . ID=Physo109358;Parent=Physo109358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 206303 207204 . - . ID=Physo109358.2;Parent=Physo109358;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_95 . CDS 206655 207204 . - 0 ID=Physo109358;Parent=Physo109358;rank=2 scaffold_95 . CDS 207439 207479 . - 0 ID=Physo109358;Parent=Physo109358;rank=1 scaffold_95 . exon 207439 207501 . - . ID=Physo109358.1;Parent=Physo109358;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_95 ensembl protein_coding_gene 204789 205935 . + . ID=Physo121724;biotype=protein_coding;external_name=estExt_Genewise1.C_950105;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 204789 205935 . + . ID=Physo121724;Parent=Physo121724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 204789 205575 . + 0 ID=Physo121724;Parent=Physo121724;rank=1 scaffold_95 . exon 204789 205575 . + . ID=Physo121724.1;Parent=Physo121724;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . CDS 205639 205703 . + 0 ID=Physo121724;Parent=Physo121724;rank=2 scaffold_95 . exon 205639 205703 . + . ID=Physo121724.2;Parent=Physo121724;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 205781 205825 . + 0 ID=Physo121724;Parent=Physo121724;rank=3 scaffold_95 . exon 205781 205825 . + . ID=Physo121724.3;Parent=Physo121724;constitutive=1;rank=3 scaffold_95 . CDS 205909 205935 . + 0 ID=Physo121724;Parent=Physo121724;rank=4 scaffold_95 . exon 205909 205935 . + . ID=Physo121724.4;Parent=Physo121724;constitutive=1;rank=4 scaffold_95 ensembl protein_coding_gene 208736 209965 . + . ID=Physo141195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950043;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 208736 209965 . + . ID=Physo141195;Parent=Physo141195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 208736 209842 . + 0 ID=Physo141195;Parent=Physo141195;rank=1 scaffold_95 . exon 208736 209965 . + . ID=Physo141195.1;Parent=Physo141195;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_95 . repeat_region 214722 214768 . ? . description=trf scaffold_95 . repeat_region 214877 215524 . ? . description=trf scaffold_95 . biological_region 215146 215146 0.999 - . logic_name=eponine scaffold_95 . biological_region 215192 215192 0.999 - . logic_name=eponine scaffold_95 . biological_region 215560 215563 0.999 + . logic_name=eponine scaffold_95 . biological_region 217655 217661 0.999 + . logic_name=eponine scaffold_95 . biological_region 217696 217698 0.999 - . logic_name=eponine scaffold_95 . biological_region 219276 219277 0.999 + . logic_name=eponine scaffold_95 . biological_region 219483 219487 0.999 - . logic_name=eponine scaffold_95 ensembl protein_coding_gene 222266 223075 . - . ID=Physo109359;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950004;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 222266 223075 . - . ID=Physo109359;Parent=Physo109359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 222266 223075 . - 0 ID=Physo109359;Parent=Physo109359;rank=1 scaffold_95 . exon 222266 223075 . - . ID=Physo109359.1;Parent=Physo109359;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 215920 217606 . - . ID=Physo121742;biotype=protein_coding;external_name=estExt_Genewise1.C_950123;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 215920 217606 . - . ID=Physo121742;Parent=Physo121742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 215920 216277 . - 0 ID=Physo121742;Parent=Physo121742;rank=6 scaffold_95 . exon 215920 216277 . - . ID=Physo121742.6;Parent=Physo121742;constitutive=1;ensembl_phase=2;rank=6 scaffold_95 . CDS 216357 216447 . - 0 ID=Physo121742;Parent=Physo121742;rank=5 scaffold_95 . exon 216357 216447 . - . ID=Physo121742.5;Parent=Physo121742;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_95 . CDS 216521 216560 . - 0 ID=Physo121742;Parent=Physo121742;rank=4 scaffold_95 . exon 216521 216560 . - . ID=Physo121742.4;Parent=Physo121742;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_95 . CDS 216625 216758 . - 0 ID=Physo121742;Parent=Physo121742;rank=3 scaffold_95 . exon 216625 216758 . - . ID=Physo121742.3;Parent=Physo121742;constitutive=1;ensembl_phase=1;rank=3 scaffold_95 . CDS 216827 217016 . - 0 ID=Physo121742;Parent=Physo121742;rank=2 scaffold_95 . exon 216827 217016 . - . ID=Physo121742.2;Parent=Physo121742;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_95 . CDS 217103 217546 . - 0 ID=Physo121742;Parent=Physo121742;rank=1 scaffold_95 . exon 217103 217606 . - . ID=Physo121742.1;Parent=Physo121742;constitutive=1;ensembl_phase=-1;rank=1 scaffold_95 ensembl protein_coding_gene 214382 215778 . + . ID=Physo141196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950044;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 214382 215778 . + . ID=Physo141196;Parent=Physo141196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 214382 215778 . + . ID=Physo141196.1;Parent=Physo141196;constitutive=1;ensembl_phase=-1;rank=1 scaffold_95 . CDS 214423 215778 . + 0 ID=Physo141196;Parent=Physo141196;rank=1 scaffold_95 ensembl protein_coding_gene 220350 221389 . + . ID=Physo141198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950046;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 220350 221389 . + . ID=Physo141198;Parent=Physo141198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 220350 221389 . + . ID=Physo141198.1;Parent=Physo141198;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_95 . CDS 220387 221289 . + 0 ID=Physo141198;Parent=Physo141198;rank=1 scaffold_95 ensembl protein_coding_gene 223976 224716 . - . ID=Physo121749;biotype=protein_coding;external_name=estExt_Genewise1.C_950130;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 223976 224716 . - . ID=Physo121749;Parent=Physo121749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 223976 224668 . - 0 ID=Physo121749;Parent=Physo121749;rank=1 scaffold_95 . exon 223976 224716 . - . ID=Physo121749.1;Parent=Physo121749;constitutive=1;ensembl_phase=-1;rank=1 scaffold_95 ensembl protein_coding_gene 225743 226706 . - . ID=Physo141201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950049;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 225743 226706 . - . ID=Physo141201;Parent=Physo141201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 225743 226706 . - . ID=Physo141201.1;Parent=Physo141201;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_95 . CDS 225746 226630 . - 0 ID=Physo141201;Parent=Physo141201;rank=1 scaffold_95 ensembl protein_coding_gene 229507 230442 . + . ID=Physo141202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950050;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 229507 230442 . + . ID=Physo141202;Parent=Physo141202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 229507 230442 . + 0 ID=Physo141202;Parent=Physo141202;rank=1 scaffold_95 . exon 229507 230442 . + . ID=Physo141202.1;Parent=Physo141202;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 230582 232711 . - . ID=Physo141203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950051;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 230582 232711 . - . ID=Physo141203;Parent=Physo141203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 230582 232711 . - 0 ID=Physo141203;Parent=Physo141203;rank=1 scaffold_95 . exon 230582 232711 . - . ID=Physo141203.1;Parent=Physo141203;constitutive=1;rank=1 scaffold_95 . biological_region 234381 234381 0.999 + . logic_name=eponine scaffold_95 . biological_region 238480 238484 0.999 - . logic_name=eponine scaffold_95 . biological_region 238519 238524 0.999 - . logic_name=eponine scaffold_95 . biological_region 240361 240363 0.999 + . logic_name=eponine scaffold_95 ensembl protein_coding_gene 233357 238609 . - . ID=Physo141204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950052;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 233357 238609 . - . ID=Physo141204;Parent=Physo141204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 233357 238609 . - 0 ID=Physo141204;Parent=Physo141204;rank=1 scaffold_95 . exon 233357 238609 . - . ID=Physo141204.1;Parent=Physo141204;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 239354 240908 . + . ID=Physo141205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950053;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 239354 240908 . + . ID=Physo141205;Parent=Physo141205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 239354 240675 . + 0 ID=Physo141205;Parent=Physo141205;rank=1 scaffold_95 . exon 239354 240675 . + . ID=Physo141205.1;Parent=Physo141205;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 . CDS 240758 240908 . + 0 ID=Physo141205;Parent=Physo141205;rank=2 scaffold_95 . exon 240758 240908 . + . ID=Physo141205.2;Parent=Physo141205;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 ensembl protein_coding_gene 241414 243537 . - . ID=Physo141206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950054;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 241414 243537 . - . ID=Physo141206;Parent=Physo141206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 241414 243537 . - 0 ID=Physo141206;Parent=Physo141206;rank=1 scaffold_95 . exon 241414 243537 . - . ID=Physo141206.1;Parent=Physo141206;constitutive=1;rank=1 scaffold_95 . repeat_region 252099 252147 . ? . description=trf scaffold_95 . repeat_region 252119 252187 . ? . description=trf scaffold_95 ensembl protein_coding_gene 243845 246384 . - . ID=Physo141207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950055;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 243845 246384 . - . ID=Physo141207;Parent=Physo141207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 243845 245236 . - . ID=Physo141207.5;Parent=Physo141207;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_95 . CDS 243878 245236 . - 0 ID=Physo141207;Parent=Physo141207;rank=5 scaffold_95 . CDS 245289 245562 . - 0 ID=Physo141207;Parent=Physo141207;rank=4 scaffold_95 . exon 245289 245562 . - . ID=Physo141207.4;Parent=Physo141207;constitutive=1;ensembl_phase=2;rank=4 scaffold_95 . CDS 245608 245788 . - 0 ID=Physo141207;Parent=Physo141207;rank=3 scaffold_95 . exon 245608 245788 . - . ID=Physo141207.3;Parent=Physo141207;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_95 . CDS 245864 246086 . - 0 ID=Physo141207;Parent=Physo141207;rank=2 scaffold_95 . exon 245864 246086 . - . ID=Physo141207.2;Parent=Physo141207;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_95 . CDS 246223 246384 . - 0 ID=Physo141207;Parent=Physo141207;rank=1 scaffold_95 . exon 246223 246384 . - . ID=Physo141207.1;Parent=Physo141207;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 246920 248759 . - . ID=Physo141208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950056;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 246920 248759 . - . ID=Physo141208;Parent=Physo141208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 246920 247156 . - 0 ID=Physo141208;Parent=Physo141208;rank=4 scaffold_95 . exon 246920 247156 . - . ID=Physo141208.4;Parent=Physo141208;constitutive=1;rank=4 scaffold_95 . CDS 247178 247639 . - 0 ID=Physo141208;Parent=Physo141208;rank=3 scaffold_95 . exon 247178 247639 . - . ID=Physo141208.3;Parent=Physo141208;constitutive=1;rank=3 scaffold_95 . CDS 247883 248234 . - 0 ID=Physo141208;Parent=Physo141208;rank=2 scaffold_95 . exon 247883 248234 . - . ID=Physo141208.2;Parent=Physo141208;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 248326 248759 . - 0 ID=Physo141208;Parent=Physo141208;rank=1 scaffold_95 . exon 248326 248759 . - . ID=Physo141208.1;Parent=Physo141208;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 ensembl protein_coding_gene 249394 251235 . - . ID=Physo141209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950057;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 249394 251235 . - . ID=Physo141209;Parent=Physo141209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 249394 249698 . - 0 ID=Physo141209;Parent=Physo141209;rank=3 scaffold_95 . exon 249394 249698 . - . ID=Physo141209.3;Parent=Physo141209;constitutive=1;ensembl_phase=1;rank=3 scaffold_95 . CDS 249908 250604 . - 0 ID=Physo141209;Parent=Physo141209;rank=2 scaffold_95 . exon 249908 250604 . - . ID=Physo141209.2;Parent=Physo141209;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_95 . CDS 250633 251235 . - 0 ID=Physo141209;Parent=Physo141209;rank=1 scaffold_95 . exon 250633 251235 . - . ID=Physo141209.1;Parent=Physo141209;constitutive=1;rank=1 scaffold_95 . biological_region 257152 257154 0.999 + . logic_name=eponine scaffold_95 . biological_region 259125 259128 0.999 - . logic_name=eponine scaffold_95 . biological_region 260351 260351 0.999 - . logic_name=eponine scaffold_95 ensembl protein_coding_gene 253608 257639 . + . ID=Physo141210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950058;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 253608 257639 . + . ID=Physo141210;Parent=Physo141210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 253608 254168 . + 0 ID=Physo141210;Parent=Physo141210;rank=1 scaffold_95 . exon 253608 254168 . + . ID=Physo141210.1;Parent=Physo141210;constitutive=1;rank=1 scaffold_95 . CDS 254197 254847 . + 0 ID=Physo141210;Parent=Physo141210;rank=2 scaffold_95 . exon 254197 254847 . + . ID=Physo141210.2;Parent=Physo141210;constitutive=1;rank=2 scaffold_95 . CDS 254943 255278 . + 0 ID=Physo141210;Parent=Physo141210;rank=3 scaffold_95 . exon 254943 255278 . + . ID=Physo141210.3;Parent=Physo141210;constitutive=1;rank=3 scaffold_95 . CDS 255881 256476 . + 0 ID=Physo141210;Parent=Physo141210;rank=4 scaffold_95 . exon 255881 256476 . + . ID=Physo141210.4;Parent=Physo141210;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_95 . CDS 256568 256919 . + 0 ID=Physo141210;Parent=Physo141210;rank=5 scaffold_95 . exon 256568 256919 . + . ID=Physo141210.5;Parent=Physo141210;constitutive=1;ensembl_phase=2;rank=5 scaffold_95 . CDS 257163 257639 . + 0 ID=Physo141210;Parent=Physo141210;rank=6 scaffold_95 . exon 257163 257639 . + . ID=Physo141210.6;Parent=Physo141210;constitutive=1;rank=6 scaffold_95 ensembl protein_coding_gene 259812 262043 . + . ID=Physo141211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950059;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 259812 262043 . + . ID=Physo141211;Parent=Physo141211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 259812 261989 . + 0 ID=Physo141211;Parent=Physo141211;rank=1 scaffold_95 . exon 259812 262043 . + . ID=Physo141211.1;Parent=Physo141211;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_95 . repeat_region 263161 263169 . ? . description=dust scaffold_95 . repeat_region 264612 264693 . ? . description=trf scaffold_95 . repeat_region 264678 264718 . ? . description=trf scaffold_95 . repeat_region 264684 264748 . ? . description=trf scaffold_95 . repeat_region 265113 265143 . ? . description=trf scaffold_95 ensembl protein_coding_gene 263390 264860 . - . ID=Physo141212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950060;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 263390 264860 . - . ID=Physo141212;Parent=Physo141212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 263390 264004 . - 0 ID=Physo141212;Parent=Physo141212;rank=2 scaffold_95 . exon 263390 264004 . - . ID=Physo141212.2;Parent=Physo141212;constitutive=1;rank=2 scaffold_95 . CDS 264141 264860 . - 0 ID=Physo141212;Parent=Physo141212;rank=1 scaffold_95 . exon 264141 264860 . - . ID=Physo141212.1;Parent=Physo141212;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 265379 268315 . + . ID=Physo141213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950061;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 265379 268315 . + . ID=Physo141213;Parent=Physo141213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 265379 268315 . + 0 ID=Physo141213;Parent=Physo141213;rank=1 scaffold_95 . exon 265379 268315 . + . ID=Physo141213.1;Parent=Physo141213;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 268595 269562 . + . ID=Physo141214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950062;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 268595 269562 . + . ID=Physo141214;Parent=Physo141214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 268595 268868 . + 0 ID=Physo141214;Parent=Physo141214;rank=1 scaffold_95 . exon 268595 268868 . + . ID=Physo141214.1;Parent=Physo141214;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . CDS 268943 269562 . + 0 ID=Physo141214;Parent=Physo141214;rank=2 scaffold_95 . exon 268943 269562 . + . ID=Physo141214.2;Parent=Physo141214;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 ensembl protein_coding_gene 269657 276368 . - . ID=Physo141215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950063;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 269657 276368 . - . ID=Physo141215;Parent=Physo141215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 269657 271956 . - 0 ID=Physo141215;Parent=Physo141215;rank=7 scaffold_95 . exon 269657 271956 . - . ID=Physo141215.7;Parent=Physo141215;constitutive=1;ensembl_phase=1;rank=7 scaffold_95 . CDS 272024 272099 . - 0 ID=Physo141215;Parent=Physo141215;rank=6 scaffold_95 . CDS 272170 272691 . - 0 ID=Physo141215;Parent=Physo141215;rank=5 scaffold_95 . CDS 272867 275437 . - 0 ID=Physo141215;Parent=Physo141215;rank=4 scaffold_95 . CDS 275512 275592 . - 0 ID=Physo141215;Parent=Physo141215;rank=3 scaffold_95 . CDS 275671 276071 . - 0 ID=Physo141215;Parent=Physo141215;rank=2 scaffold_95 . CDS 276143 276368 . - 0 ID=Physo141215;Parent=Physo141215;rank=1 scaffold_95 . biological_region 274111 274112 0.999 - . logic_name=eponine scaffold_95 . biological_region 274166 274170 0.999 + . logic_name=eponine scaffold_95 . biological_region 274404 274409 0.999 - . logic_name=eponine scaffold_95 . biological_region 274461 274466 0.999 + . logic_name=eponine scaffold_95 . biological_region 276398 276399 0.999 - . logic_name=eponine scaffold_95 . biological_region 276444 276446 0.999 - . logic_name=eponine scaffold_95 . biological_region 276495 276498 0.999 - . logic_name=eponine scaffold_95 . biological_region 277853 277861 0.999 + . logic_name=eponine scaffold_95 . biological_region 277864 277868 0.999 + . logic_name=eponine scaffold_95 . biological_region 277880 277883 0.999 + . logic_name=eponine scaffold_95 . biological_region 277887 277891 0.999 + . logic_name=eponine scaffold_95 . biological_region 277892 277893 0.999 - . logic_name=eponine scaffold_95 . biological_region 277897 277900 0.999 + . logic_name=eponine scaffold_95 . biological_region 277912 277919 0.999 - . logic_name=eponine scaffold_95 . biological_region 277926 277929 0.999 + . logic_name=eponine scaffold_95 . biological_region 277943 277948 0.999 + . logic_name=eponine scaffold_95 . biological_region 277968 277975 0.999 + . logic_name=eponine scaffold_95 . biological_region 278030 278031 0.999 - . logic_name=eponine scaffold_95 . biological_region 278082 278087 0.999 - . logic_name=eponine scaffold_95 . biological_region 278671 278676 0.999 + . logic_name=eponine scaffold_95 . biological_region 278751 278754 0.999 + . logic_name=eponine scaffold_95 . biological_region 279457 279457 0.999 + . logic_name=eponine scaffold_95 . biological_region 279682 279682 0.999 + . logic_name=eponine scaffold_95 . biological_region 279883 279886 0.999 - . logic_name=eponine scaffold_95 . exon 272024 272099 . - . ID=Physo141215.6;Parent=Physo141215;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_95 . exon 272170 272691 . - . ID=Physo141215.5;Parent=Physo141215;constitutive=1;rank=5 scaffold_95 . exon 272867 275437 . - . ID=Physo141215.4;Parent=Physo141215;constitutive=1;rank=4 scaffold_95 . exon 275512 275592 . - . ID=Physo141215.3;Parent=Physo141215;constitutive=1;rank=3 scaffold_95 . exon 275671 276071 . - . ID=Physo141215.2;Parent=Physo141215;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . exon 276143 276368 . - . ID=Physo141215.1;Parent=Physo141215;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 ensembl protein_coding_gene 276981 278066 . - . ID=Physo141216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950064;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 276981 278066 . - . ID=Physo141216;Parent=Physo141216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 276981 278066 . - 0 ID=Physo141216;Parent=Physo141216;rank=1 scaffold_95 . exon 276981 278066 . - . ID=Physo141216.1;Parent=Physo141216;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 279619 282072 . + . ID=Physo141217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950065;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 279619 282072 . + . ID=Physo141217;Parent=Physo141217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 279619 280181 . + 0 ID=Physo141217;Parent=Physo141217;rank=1 scaffold_95 . exon 279619 280181 . + . ID=Physo141217.1;Parent=Physo141217;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 . CDS 280244 280479 . + 0 ID=Physo141217;Parent=Physo141217;rank=2 scaffold_95 . exon 280244 280479 . + . ID=Physo141217.2;Parent=Physo141217;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 280549 280678 . + 0 ID=Physo141217;Parent=Physo141217;rank=3 scaffold_95 . exon 280549 280678 . + . ID=Physo141217.3;Parent=Physo141217;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_95 . CDS 280750 280936 . + 0 ID=Physo141217;Parent=Physo141217;rank=4 scaffold_95 . exon 280750 280936 . + . ID=Physo141217.4;Parent=Physo141217;constitutive=1;ensembl_phase=2;rank=4 scaffold_95 . CDS 281008 282072 . + 0 ID=Physo141217;Parent=Physo141217;rank=5 scaffold_95 . exon 281008 282072 . + . ID=Physo141217.5;Parent=Physo141217;constitutive=1;rank=5 scaffold_95 . repeat_region 288666 288683 . ? . description=dust scaffold_95 ensembl protein_coding_gene 288256 288996 . - . ID=Physo109361;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950006;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 288256 288996 . - . ID=Physo109361;Parent=Physo109361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 288256 288996 . - 0 ID=Physo109361;Parent=Physo109361;rank=1 scaffold_95 . exon 288256 288996 . - . ID=Physo109361.1;Parent=Physo109361;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 289935 290327 . - . ID=Physo109362;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950007;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 289935 290327 . - . ID=Physo109362;Parent=Physo109362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 289935 290327 . - 0 ID=Physo109362;Parent=Physo109362;rank=1 scaffold_95 . exon 289935 290327 . - . ID=Physo109362.1;Parent=Physo109362;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 290641 292191 . - . ID=Physo109363;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950008;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 290641 292191 . - . ID=Physo109363;Parent=Physo109363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 290641 290661 . - 0 ID=Physo109363;Parent=Physo109363;rank=3 scaffold_95 . exon 290641 290661 . - . ID=Physo109363.3;Parent=Physo109363;constitutive=1;rank=3 scaffold_95 . CDS 290684 292097 . - 0 ID=Physo109363;Parent=Physo109363;rank=2 scaffold_95 . exon 290684 292097 . - . ID=Physo109363.2;Parent=Physo109363;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 292127 292191 . - 0 ID=Physo109363;Parent=Physo109363;rank=1 scaffold_95 ensembl protein_coding_gene 282978 285377 . - . ID=Physo141218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950066;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 282978 285377 . - . ID=Physo141218;Parent=Physo141218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 282978 283003 . - 0 ID=Physo141218;Parent=Physo141218;rank=3 scaffold_95 . exon 282978 283003 . - . ID=Physo141218.3;Parent=Physo141218;constitutive=1;ensembl_phase=1;rank=3 scaffold_95 . CDS 283163 283212 . - 0 ID=Physo141218;Parent=Physo141218;rank=2 scaffold_95 . exon 283163 283212 . - . ID=Physo141218.2;Parent=Physo141218;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 283270 285377 . - 0 ID=Physo141218;Parent=Physo141218;rank=1 scaffold_95 . exon 283270 285377 . - . ID=Physo141218.1;Parent=Physo141218;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 ensembl protein_coding_gene 286314 287388 . - . ID=Physo141219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950067;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 286314 287388 . - . ID=Physo141219;Parent=Physo141219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 286314 286478 . - 0 ID=Physo141219;Parent=Physo141219;rank=6 scaffold_95 . exon 286314 286478 . - . ID=Physo141219.6;Parent=Physo141219;constitutive=1;rank=6 scaffold_95 . CDS 286561 286749 . - 0 ID=Physo141219;Parent=Physo141219;rank=5 scaffold_95 . exon 286561 286749 . - . ID=Physo141219.5;Parent=Physo141219;constitutive=1;rank=5 scaffold_95 . CDS 286819 286869 . - 0 ID=Physo141219;Parent=Physo141219;rank=4 scaffold_95 . exon 286819 286869 . - . ID=Physo141219.4;Parent=Physo141219;constitutive=1;rank=4 scaffold_95 . CDS 286936 287010 . - 0 ID=Physo141219;Parent=Physo141219;rank=3 scaffold_95 . exon 286936 287010 . - . ID=Physo141219.3;Parent=Physo141219;constitutive=1;rank=3 scaffold_95 . CDS 287093 287253 . - 0 ID=Physo141219;Parent=Physo141219;rank=2 scaffold_95 . exon 287093 287253 . - . ID=Physo141219.2;Parent=Physo141219;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 . CDS 287337 287388 . - 0 ID=Physo141219;Parent=Physo141219;rank=1 scaffold_95 . exon 287337 287388 . - . ID=Physo141219.1;Parent=Physo141219;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . biological_region 292088 292097 0.999 - . logic_name=eponine scaffold_95 . biological_region 292135 292135 0.999 - . logic_name=eponine scaffold_95 . repeat_region 292541 292572 . ? . description=trf scaffold_95 . biological_region 292673 292677 0.999 + . logic_name=eponine scaffold_95 . biological_region 297198 297204 0.999 - . logic_name=eponine scaffold_95 . exon 292127 292191 . - . ID=Physo109363.1;Parent=Physo109363;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 ensembl protein_coding_gene 293526 294266 . + . ID=Physo109364;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950009;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 293526 294266 . + . ID=Physo109364;Parent=Physo109364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 293526 293780 . + 0 ID=Physo109364;Parent=Physo109364;rank=1 scaffold_95 . exon 293526 293780 . + . ID=Physo109364.1;Parent=Physo109364;constitutive=1;rank=1 scaffold_95 . CDS 293807 294148 . + 0 ID=Physo109364;Parent=Physo109364;rank=2 scaffold_95 . exon 293807 294148 . + . ID=Physo109364.2;Parent=Physo109364;constitutive=1;rank=2 scaffold_95 . CDS 294168 294266 . + 0 ID=Physo109364;Parent=Physo109364;rank=3 scaffold_95 . exon 294168 294266 . + . ID=Physo109364.3;Parent=Physo109364;constitutive=1;rank=3 scaffold_95 ensembl protein_coding_gene 298118 298855 . - . ID=Physo109365;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950010;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 298118 298855 . - . ID=Physo109365;Parent=Physo109365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 298118 298855 . - 0 ID=Physo109365;Parent=Physo109365;rank=1 scaffold_95 . exon 298118 298855 . - . ID=Physo109365.1;Parent=Physo109365;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 296943 297935 . - . ID=Physo141224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950072;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 296943 297935 . - . ID=Physo141224;Parent=Physo141224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 296943 297473 . - 0 ID=Physo141224;Parent=Physo141224;rank=2 scaffold_95 . exon 296943 297473 . - . ID=Physo141224.2;Parent=Physo141224;constitutive=1;rank=2 scaffold_95 . CDS 297546 297935 . - 0 ID=Physo141224;Parent=Physo141224;rank=1 scaffold_95 . exon 297546 297935 . - . ID=Physo141224.1;Parent=Physo141224;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 299665 300201 . - . ID=Physo158316;biotype=protein_coding;external_name=C_scaffold_95000017;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 299665 300201 . - . ID=Physo158316;Parent=Physo158316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 299665 300201 . - 0 ID=Physo158316;Parent=Physo158316;rank=1 scaffold_95 . exon 299665 300201 . - . ID=Physo158316.1;Parent=Physo158316;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 301641 302651 . + . ID=Physo141227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950075;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 301641 302651 . + . ID=Physo141227;Parent=Physo141227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 301641 301749 . + 0 ID=Physo141227;Parent=Physo141227;rank=1 scaffold_95 . exon 301641 301749 . + . ID=Physo141227.1;Parent=Physo141227;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_95 . CDS 301816 302651 . + 0 ID=Physo141227;Parent=Physo141227;rank=2 scaffold_95 . exon 301816 302651 . + . ID=Physo141227.2;Parent=Physo141227;constitutive=1;ensembl_phase=1;rank=2 scaffold_95 ensembl protein_coding_gene 302862 303329 . + . ID=Physo141228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950076;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 302862 303329 . + . ID=Physo141228;Parent=Physo141228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 302862 303329 . + 0 ID=Physo141228;Parent=Physo141228;rank=1 scaffold_95 . exon 302862 303329 . + . ID=Physo141228.1;Parent=Physo141228;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 309299 313213 . - . ID=Physo141232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950080;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 309299 313213 . - . ID=Physo141232;Parent=Physo141232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 309299 309668 . - 0 ID=Physo141232;Parent=Physo141232;rank=2 scaffold_95 . exon 309299 309668 . - . ID=Physo141232.2;Parent=Physo141232;constitutive=1;ensembl_phase=2;rank=2 scaffold_95 . CDS 309744 313213 . - 0 ID=Physo141232;Parent=Physo141232;rank=1 scaffold_95 . exon 309744 313213 . - . ID=Physo141232.1;Parent=Physo141232;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_95 ensembl protein_coding_gene 304772 309011 . + . ID=Physo158318;biotype=protein_coding;external_name=C_scaffold_95000019;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 304772 309011 . + . ID=Physo158318;Parent=Physo158318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 304772 304924 . + 0 ID=Physo158318;Parent=Physo158318;rank=1 scaffold_95 . exon 304772 304924 . + . ID=Physo158318.1;Parent=Physo158318;constitutive=1;rank=1 scaffold_95 . CDS 304985 305949 . + 0 ID=Physo158318;Parent=Physo158318;rank=2 scaffold_95 . exon 304985 305949 . + . ID=Physo158318.2;Parent=Physo158318;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_95 . CDS 306227 306483 . + 0 ID=Physo158318;Parent=Physo158318;rank=3 scaffold_95 . exon 306227 306483 . + . ID=Physo158318.3;Parent=Physo158318;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_95 . CDS 306511 306595 . + 0 ID=Physo158318;Parent=Physo158318;rank=4 scaffold_95 . exon 306511 306595 . + . ID=Physo158318.4;Parent=Physo158318;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_95 . CDS 306782 306867 . + 0 ID=Physo158318;Parent=Physo158318;rank=5 scaffold_95 . exon 306782 306867 . + . ID=Physo158318.5;Parent=Physo158318;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_95 . CDS 306913 307296 . + 0 ID=Physo158318;Parent=Physo158318;rank=6 scaffold_95 . exon 306913 307296 . + . ID=Physo158318.6;Parent=Physo158318;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_95 . CDS 307420 307669 . + 0 ID=Physo158318;Parent=Physo158318;rank=7 scaffold_95 . exon 307420 307669 . + . ID=Physo158318.7;Parent=Physo158318;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_95 . CDS 307827 308044 . + 0 ID=Physo158318;Parent=Physo158318;rank=8 scaffold_95 . exon 307827 308044 . + . ID=Physo158318.8;Parent=Physo158318;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_95 . CDS 308155 308327 . + 0 ID=Physo158318;Parent=Physo158318;rank=9 scaffold_95 . exon 308155 308327 . + . ID=Physo158318.9;Parent=Physo158318;constitutive=1;ensembl_phase=1;rank=9 scaffold_95 . CDS 308411 308567 . + 0 ID=Physo158318;Parent=Physo158318;rank=10 scaffold_95 . exon 308411 308567 . + . ID=Physo158318.10;Parent=Physo158318;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_95 . CDS 308635 309011 . + 0 ID=Physo158318;Parent=Physo158318;rank=11 scaffold_95 . exon 308635 309011 . + . ID=Physo158318.11;Parent=Physo158318;constitutive=1;ensembl_phase=1;rank=11 scaffold_95 . biological_region 311106 311109 0.999 + . logic_name=eponine scaffold_95 . biological_region 312329 312334 0.999 + . logic_name=eponine scaffold_95 . biological_region 312398 312402 0.999 + . logic_name=eponine scaffold_95 . biological_region 312694 312697 0.999 + . logic_name=eponine scaffold_95 . biological_region 313428 313431 0.999 - . logic_name=eponine scaffold_95 . biological_region 315475 315478 0.999 + . logic_name=eponine scaffold_95 . biological_region 316575 316578 0.999 + . logic_name=eponine scaffold_95 . repeat_region 316795 316831 . ? . description=dust scaffold_95 . repeat_region 316796 316828 . ? . description=trf scaffold_95 . biological_region 317000 317002 0.999 + . logic_name=eponine scaffold_95 . repeat_region 317191 317216 . ? . description=trf scaffold_95 . repeat_region 317914 317921 . ? . description=dust scaffold_95 . biological_region 318900 318907 0.999 + . logic_name=eponine scaffold_95 . biological_region 319558 319558 0.999 - . logic_name=eponine scaffold_95 . biological_region 320234 320236 0.999 + . logic_name=eponine scaffold_95 . biological_region 320254 320258 0.999 + . logic_name=eponine scaffold_95 . biological_region 320267 320276 0.999 - . logic_name=eponine scaffold_95 . biological_region 320307 320309 0.999 + . logic_name=eponine scaffold_95 . biological_region 320323 320332 0.999 + . logic_name=eponine scaffold_95 . biological_region 320333 320337 0.999 - . logic_name=eponine scaffold_95 ensembl protein_coding_gene 315151 316843 . - . ID=Physo109368;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950013;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 315151 316843 . - . ID=Physo109368;Parent=Physo109368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 315151 316843 . - . ID=Physo109368.1;Parent=Physo109368;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_95 . CDS 315263 316780 . - 0 ID=Physo109368;Parent=Physo109368;rank=1 scaffold_95 ensembl protein_coding_gene 318615 320126 . - . ID=Physo109369;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950014;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 318615 320126 . - . ID=Physo109369;Parent=Physo109369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . CDS 318615 320126 . - 0 ID=Physo109369;Parent=Physo109369;rank=1 scaffold_95 . exon 318615 320126 . - . ID=Physo109369.1;Parent=Physo109369;constitutive=1;rank=1 scaffold_95 ensembl protein_coding_gene 328086 329853 . + . ID=Physo109370;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_950015;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 328086 329853 . + . ID=Physo109370;Parent=Physo109370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 328086 328129 . + . ID=Physo109370.1;Parent=Physo109370;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_95 . exon 328334 329853 . + . ID=Physo109370.2;Parent=Physo109370;constitutive=1;ensembl_phase=-1;rank=2 scaffold_95 . CDS 328336 329853 . + 0 ID=Physo109370;Parent=Physo109370;rank=1 scaffold_95 ensembl protein_coding_gene 324498 326070 . - . ID=Physo141235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_950083;logic_name=jgi_physo1_1 scaffold_95 ensembl transcript 324498 326070 . - . ID=Physo141235;Parent=Physo141235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_95 . exon 324498 325938 . - . ID=Physo141235.2;Parent=Physo141235;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_95 . CDS 324558 325938 . - 0 ID=Physo141235;Parent=Physo141235;rank=2 scaffold_95 . CDS 325961 326070 . - 0 ID=Physo141235;Parent=Physo141235;rank=1 scaffold_95 . exon 325961 326070 . - . ID=Physo141235.1;Parent=Physo141235;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_94 1 333256 scaffold_94 . biological_region 1346 1350 0.999 - . logic_name=eponine scaffold_94 . biological_region 1567 1569 0.999 - . logic_name=eponine scaffold_94 . biological_region 1592 1596 0.999 + . logic_name=eponine scaffold_94 . biological_region 1652 1654 0.999 - . logic_name=eponine scaffold_94 . repeat_region 1732 1781 . ? . description=dust scaffold_94 . biological_region 1849 1854 0.999 + . logic_name=eponine scaffold_94 . repeat_region 1858 1899 . ? . description=trf scaffold_94 . biological_region 1867 1872 0.999 - . logic_name=eponine scaffold_94 . biological_region 1951 1957 0.999 + . logic_name=eponine scaffold_94 . biological_region 1959 1961 0.999 - . logic_name=eponine scaffold_94 . biological_region 1989 1990 0.999 - . logic_name=eponine scaffold_94 . biological_region 2009 2010 0.999 - . logic_name=eponine scaffold_94 . biological_region 2035 2038 0.999 - . logic_name=eponine scaffold_94 . repeat_region 2042 2090 . ? . description=trf scaffold_94 . biological_region 2683 2683 0.999 + . logic_name=eponine scaffold_94 . biological_region 2708 2709 0.999 - . logic_name=eponine scaffold_94 . repeat_region 2719 4025 . - . description=GypsyPi-1c_I-int scaffold_94 . biological_region 5354 5354 0.999 - . logic_name=eponine scaffold_94 . biological_region 6086 6087 0.999 - . logic_name=eponine scaffold_94 . biological_region 6862 6864 0.999 - . logic_name=eponine scaffold_94 . biological_region 7125 7128 0.999 - . logic_name=eponine scaffold_94 . repeat_region 8412 8442 . ? . description=dust scaffold_94 . repeat_region 8412 8442 . ? . description=trf scaffold_94 ensembl protein_coding_gene 3177 3563 . - . ID=Physo121619;biotype=protein_coding;external_name=estExt_Genewise1.C_940028;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 3177 3563 . - . ID=Physo121619;Parent=Physo121619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 3177 3491 . - 0 ID=Physo121619;Parent=Physo121619;rank=1 scaffold_94 . exon 3177 3563 . - . ID=Physo121619.1;Parent=Physo121619;constitutive=1;ensembl_phase=-1;rank=1 scaffold_94 ensembl protein_coding_gene 5207 7288 . - . ID=Physo141090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940001;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 5207 7288 . - . ID=Physo141090;Parent=Physo141090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 5207 6183 . - 0 ID=Physo141090;Parent=Physo141090;rank=4 scaffold_94 . exon 5207 6183 . - . ID=Physo141090.4;Parent=Physo141090;constitutive=1;ensembl_phase=1;rank=4 scaffold_94 . CDS 6334 6530 . - 0 ID=Physo141090;Parent=Physo141090;rank=3 scaffold_94 . exon 6334 6530 . - . ID=Physo141090.3;Parent=Physo141090;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_94 . CDS 6602 6834 . - 0 ID=Physo141090;Parent=Physo141090;rank=2 scaffold_94 . exon 6602 6834 . - . ID=Physo141090.2;Parent=Physo141090;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_94 . CDS 6899 7288 . - 0 ID=Physo141090;Parent=Physo141090;rank=1 scaffold_94 . exon 6899 7288 . - . ID=Physo141090.1;Parent=Physo141090;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 9709 10564 . + . ID=Physo141091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940002;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 9709 10564 . + . ID=Physo141091;Parent=Physo141091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 9709 10010 . + 0 ID=Physo141091;Parent=Physo141091;rank=1 scaffold_94 . exon 9709 10010 . + . ID=Physo141091.1;Parent=Physo141091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_94 . CDS 10261 10564 . + 0 ID=Physo141091;Parent=Physo141091;rank=2 scaffold_94 ensembl protein_coding_gene 13248 13421 . + . ID=Physo121595;biotype=protein_coding;external_name=estExt_Genewise1.C_940004;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 13248 13421 . + . ID=Physo121595;Parent=Physo121595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . exon 13248 13421 . + . ID=Physo121595.1;Parent=Physo121595;constitutive=1;ensembl_phase=-1;rank=1 scaffold_94 . CDS 13287 13421 . + 0 ID=Physo121595;Parent=Physo121595;rank=1 scaffold_94 . exon 10261 10564 . + . ID=Physo141091.2;Parent=Physo141091;constitutive=1;ensembl_phase=2;rank=2 scaffold_94 ensembl protein_coding_gene 19427 20002 . - . ID=Physo141092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940003;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 19427 20002 . - . ID=Physo141092;Parent=Physo141092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 19427 20002 . - 0 ID=Physo141092;Parent=Physo141092;rank=1 scaffold_94 . exon 19427 20002 . - . ID=Physo141092.1;Parent=Physo141092;constitutive=1;rank=1 scaffold_94 . repeat_region 20112 21884 . ? . description=dust scaffold_94 . repeat_region 22536 22588 . ? . description=trf scaffold_94 . repeat_region 23643 23788 . ? . description=dust scaffold_94 . repeat_region 25003 27772 . ? . description=dust scaffold_94 . repeat_region 27773 32756 . ? . description=dust scaffold_94 . repeat_region 39559 39566 . ? . description=dust scaffold_94 . repeat_region 41124 41176 . ? . description=dust scaffold_94 . biological_region 45588 45590 0.999 + . logic_name=eponine scaffold_94 . biological_region 45665 45665 0.999 - . logic_name=eponine scaffold_94 . biological_region 45692 45695 0.999 - . logic_name=eponine scaffold_94 ensembl protein_coding_gene 43948 44416 . - . ID=Physo141093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940004;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 43948 44416 . - . ID=Physo141093;Parent=Physo141093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 43948 44202 . - 0 ID=Physo141093;Parent=Physo141093;rank=2 scaffold_94 . exon 43948 44202 . - . ID=Physo141093.2;Parent=Physo141093;constitutive=1;rank=2 scaffold_94 . CDS 44255 44416 . - 0 ID=Physo141093;Parent=Physo141093;rank=1 scaffold_94 . exon 44255 44416 . - . ID=Physo141093.1;Parent=Physo141093;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 46094 47492 . + . ID=Physo141094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940005;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 46094 47492 . + . ID=Physo141094;Parent=Physo141094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 46094 47380 . + 0 ID=Physo141094;Parent=Physo141094;rank=1 scaffold_94 . exon 46094 47380 . + . ID=Physo141094.1;Parent=Physo141094;constitutive=1;rank=1 scaffold_94 . CDS 47466 47492 . + 0 ID=Physo141094;Parent=Physo141094;rank=2 scaffold_94 . exon 47466 47492 . + . ID=Physo141094.2;Parent=Physo141094;constitutive=1;rank=2 scaffold_94 ensembl protein_coding_gene 48082 48621 . - . ID=Physo141095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940006;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 48082 48621 . - . ID=Physo141095;Parent=Physo141095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 48082 48621 . - 0 ID=Physo141095;Parent=Physo141095;rank=1 scaffold_94 . exon 48082 48621 . - . ID=Physo141095.1;Parent=Physo141095;constitutive=1;rank=1 scaffold_94 . repeat_region 50006 50025 . ? . description=trf scaffold_94 ensembl protein_coding_gene 55205 55710 . + . ID=Physo141096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940007;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 55205 55710 . + . ID=Physo141096;Parent=Physo141096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 55205 55243 . + 0 ID=Physo141096;Parent=Physo141096;rank=1 scaffold_94 . exon 55205 55243 . + . ID=Physo141096.1;Parent=Physo141096;constitutive=1;rank=1 scaffold_94 . CDS 55312 55710 . + 0 ID=Physo141096;Parent=Physo141096;rank=2 scaffold_94 . exon 55312 55710 . + . ID=Physo141096.2;Parent=Physo141096;constitutive=1;rank=2 scaffold_94 . repeat_region 61391 61440 . ? . description=dust scaffold_94 . repeat_region 62107 62219 . - . description=Gypsy-1-LTR_PI scaffold_94 . repeat_region 62301 62488 . - . description=Gypsy-2-I_PI-int scaffold_94 . biological_region 62576 62580 0.999 - . logic_name=eponine scaffold_94 . repeat_region 63004 64601 . - . description=Gypsy-2-I_PI-int scaffold_94 . repeat_region 64602 68470 . - . description=Gypsy-2-I_PI-int scaffold_94 . repeat_region 68480 68595 . - . description=Gypsy-1-LTR_PI scaffold_94 ensembl protein_coding_gene 62494 63489 . + . ID=Physo141097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940008;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 62494 63489 . + . ID=Physo141097;Parent=Physo141097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 62494 63489 . + 0 ID=Physo141097;Parent=Physo141097;rank=1 scaffold_94 . exon 62494 63489 . + . ID=Physo141097.1;Parent=Physo141097;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 63957 68426 . - . ID=Physo141098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940009;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 63957 68426 . - . ID=Physo141098;Parent=Physo141098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 63957 64585 . - 0 ID=Physo141098;Parent=Physo141098;rank=7 scaffold_94 . exon 63957 64585 . - . ID=Physo141098.7;Parent=Physo141098;constitutive=1;ensembl_phase=1;rank=7 scaffold_94 . CDS 64873 64974 . - 0 ID=Physo141098;Parent=Physo141098;rank=6 scaffold_94 . exon 64873 64974 . - . ID=Physo141098.6;Parent=Physo141098;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_94 . CDS 65110 65813 . - 0 ID=Physo141098;Parent=Physo141098;rank=5 scaffold_94 . exon 65110 65813 . - . ID=Physo141098.5;Parent=Physo141098;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_94 . CDS 65882 67115 . - 0 ID=Physo141098;Parent=Physo141098;rank=4 scaffold_94 . exon 65882 67115 . - . ID=Physo141098.4;Parent=Physo141098;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_94 . CDS 67260 67490 . - 0 ID=Physo141098;Parent=Physo141098;rank=3 scaffold_94 . exon 67260 67490 . - . ID=Physo141098.3;Parent=Physo141098;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 67619 67938 . - 0 ID=Physo141098;Parent=Physo141098;rank=2 scaffold_94 . exon 67619 67938 . - . ID=Physo141098.2;Parent=Physo141098;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_94 . CDS 68062 68426 . - 0 ID=Physo141098;Parent=Physo141098;rank=1 scaffold_94 . exon 68062 68426 . - . ID=Physo141098.1;Parent=Physo141098;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_94 . repeat_region 69317 69379 . ? . description=trf scaffold_94 . repeat_region 69774 69812 . ? . description=trf scaffold_94 . repeat_region 71952 71975 . ? . description=trf scaffold_94 . repeat_region 72960 72986 . ? . description=trf scaffold_94 . repeat_region 74438 74578 . ? . description=trf scaffold_94 . repeat_region 75249 75275 . ? . description=trf scaffold_94 . repeat_region 75249 75275 . ? . description=trf scaffold_94 . repeat_region 75452 75476 . ? . description=trf scaffold_94 ensembl protein_coding_gene 73880 75846 . + . ID=Physo141099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940010;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 73880 75846 . + . ID=Physo141099;Parent=Physo141099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 73880 75559 . + 0 ID=Physo141099;Parent=Physo141099;rank=1 scaffold_94 . exon 73880 75846 . + . ID=Physo141099.1;Parent=Physo141099;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_94 ensembl protein_coding_gene 76139 76702 . - . ID=Physo141100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940011;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 76139 76702 . - . ID=Physo141100;Parent=Physo141100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 76139 76702 . - 0 ID=Physo141100;Parent=Physo141100;rank=1 scaffold_94 . exon 76139 76702 . - . ID=Physo141100.1;Parent=Physo141100;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 78150 79377 . + . ID=Physo141102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940013;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 78150 79377 . + . ID=Physo141102;Parent=Physo141102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 78150 78447 . + 0 ID=Physo141102;Parent=Physo141102;rank=1 scaffold_94 . exon 78150 78447 . + . ID=Physo141102.1;Parent=Physo141102;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . CDS 78509 78567 . + 0 ID=Physo141102;Parent=Physo141102;rank=2 scaffold_94 . CDS 78639 79092 . + 0 ID=Physo141102;Parent=Physo141102;rank=3 scaffold_94 . CDS 79153 79206 . + 0 ID=Physo141102;Parent=Physo141102;rank=4 scaffold_94 . CDS 79316 79377 . + 0 ID=Physo141102;Parent=Physo141102;rank=5 scaffold_94 ensembl protein_coding_gene 76939 78027 . - . ID=Physo158277;biotype=protein_coding;external_name=C_scaffold_94000005;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 76939 78027 . - . ID=Physo158277;Parent=Physo158277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 76939 77193 . - 0 ID=Physo158277;Parent=Physo158277;rank=4 scaffold_94 . exon 76939 77193 . - . ID=Physo158277.4;Parent=Physo158277;constitutive=1;rank=4 scaffold_94 . CDS 77275 77588 . - 0 ID=Physo158277;Parent=Physo158277;rank=3 scaffold_94 . exon 77275 77588 . - . ID=Physo158277.3;Parent=Physo158277;constitutive=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 77661 77870 . - 0 ID=Physo158277;Parent=Physo158277;rank=2 scaffold_94 . exon 77661 77870 . - . ID=Physo158277.2;Parent=Physo158277;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 77964 78027 . - 0 ID=Physo158277;Parent=Physo158277;rank=1 scaffold_94 . exon 77964 78027 . - . ID=Physo158277.1;Parent=Physo158277;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . biological_region 82968 82970 0.999 - . logic_name=eponine scaffold_94 . biological_region 83130 83131 0.999 + . logic_name=eponine scaffold_94 . biological_region 83201 83206 0.999 + . logic_name=eponine scaffold_94 . biological_region 83265 83270 0.999 - . logic_name=eponine scaffold_94 . repeat_region 84328 84597 . - . description=Sola3-2_PS scaffold_94 . biological_region 86560 86563 0.999 + . logic_name=eponine scaffold_94 . exon 78509 78567 . + . ID=Physo141102.2;Parent=Physo141102;constitutive=1;ensembl_phase=1;rank=2 scaffold_94 . exon 78639 79092 . + . ID=Physo141102.3;Parent=Physo141102;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_94 . exon 79153 79206 . + . ID=Physo141102.4;Parent=Physo141102;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_94 . exon 79316 79377 . + . ID=Physo141102.5;Parent=Physo141102;constitutive=1;ensembl_phase=1;rank=5 scaffold_94 ensembl protein_coding_gene 88174 89973 . - . ID=Physo141105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940016;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 88174 89973 . - . ID=Physo141105;Parent=Physo141105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 88174 89973 . - 0 ID=Physo141105;Parent=Physo141105;rank=1 scaffold_94 . exon 88174 89973 . - . ID=Physo141105.1;Parent=Physo141105;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 79565 85493 . - . ID=Physo158281;biotype=protein_coding;external_name=C_scaffold_94000009;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 79565 85493 . - . ID=Physo158281;Parent=Physo158281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 79565 79914 . - 0 ID=Physo158281;Parent=Physo158281;rank=13 scaffold_94 . exon 79565 79914 . - . ID=Physo158281.13;Parent=Physo158281;constitutive=1;ensembl_phase=1;rank=13 scaffold_94 . CDS 79939 80029 . - 0 ID=Physo158281;Parent=Physo158281;rank=12 scaffold_94 . exon 79939 80029 . - . ID=Physo158281.12;Parent=Physo158281;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_94 . CDS 80098 80385 . - 0 ID=Physo158281;Parent=Physo158281;rank=11 scaffold_94 . exon 80098 80385 . - . ID=Physo158281.11;Parent=Physo158281;constitutive=1;rank=11 scaffold_94 . CDS 80458 80763 . - 0 ID=Physo158281;Parent=Physo158281;rank=10 scaffold_94 . exon 80458 80763 . - . ID=Physo158281.10;Parent=Physo158281;constitutive=1;rank=10 scaffold_94 . CDS 80847 81064 . - 0 ID=Physo158281;Parent=Physo158281;rank=9 scaffold_94 . exon 80847 81064 . - . ID=Physo158281.9;Parent=Physo158281;constitutive=1;ensembl_phase=1;rank=9 scaffold_94 . CDS 81116 81664 . - 0 ID=Physo158281;Parent=Physo158281;rank=8 scaffold_94 . exon 81116 81664 . - . ID=Physo158281.8;Parent=Physo158281;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_94 . CDS 81719 81977 . - 0 ID=Physo158281;Parent=Physo158281;rank=7 scaffold_94 . exon 81719 81977 . - . ID=Physo158281.7;Parent=Physo158281;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_94 . CDS 81999 82391 . - 0 ID=Physo158281;Parent=Physo158281;rank=6 scaffold_94 . exon 81999 82391 . - . ID=Physo158281.6;Parent=Physo158281;constitutive=1;rank=6 scaffold_94 . CDS 82443 82757 . - 0 ID=Physo158281;Parent=Physo158281;rank=5 scaffold_94 . exon 82443 82757 . - . ID=Physo158281.5;Parent=Physo158281;constitutive=1;rank=5 scaffold_94 . CDS 82843 83322 . - 0 ID=Physo158281;Parent=Physo158281;rank=4 scaffold_94 . exon 82843 83322 . - . ID=Physo158281.4;Parent=Physo158281;constitutive=1;rank=4 scaffold_94 . CDS 83712 84208 . - 0 ID=Physo158281;Parent=Physo158281;rank=3 scaffold_94 . exon 83712 84208 . - . ID=Physo158281.3;Parent=Physo158281;constitutive=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 84266 85156 . - 0 ID=Physo158281;Parent=Physo158281;rank=2 scaffold_94 . exon 84266 85156 . - . ID=Physo158281.2;Parent=Physo158281;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 85445 85493 . - 0 ID=Physo158281;Parent=Physo158281;rank=1 scaffold_94 . exon 85445 85493 . - . ID=Physo158281.1;Parent=Physo158281;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . repeat_region 92926 92959 . ? . description=dust scaffold_94 . repeat_region 97309 97316 . ? . description=dust scaffold_94 ensembl protein_coding_gene 92389 92814 . - . ID=Physo141106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940017;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 92389 92814 . - . ID=Physo141106;Parent=Physo141106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 92389 92814 . - 0 ID=Physo141106;Parent=Physo141106;rank=1 scaffold_94 . exon 92389 92814 . - . ID=Physo141106.1;Parent=Physo141106;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 93335 95187 . - . ID=Physo141107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940018;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 93335 95187 . - . ID=Physo141107;Parent=Physo141107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 93335 94531 . - 0 ID=Physo141107;Parent=Physo141107;rank=2 scaffold_94 . exon 93335 94531 . - . ID=Physo141107.2;Parent=Physo141107;constitutive=1;rank=2 scaffold_94 . CDS 94555 95187 . - 0 ID=Physo141107;Parent=Physo141107;rank=1 scaffold_94 . exon 94555 95187 . - . ID=Physo141107.1;Parent=Physo141107;constitutive=1;rank=1 scaffold_94 . biological_region 98913 98915 0.999 + . logic_name=eponine scaffold_94 . repeat_region 100156 100719 . - . description=Sola3-2_PS scaffold_94 . repeat_region 102324 102361 . ? . description=trf scaffold_94 . repeat_region 104780 104818 . ? . description=trf scaffold_94 . biological_region 106620 106620 0.999 - . logic_name=eponine scaffold_94 . repeat_region 106789 107507 . - . description=Sola3-2_PS scaffold_94 ensembl protein_coding_gene 99544 101469 . - . ID=Physo141108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940019;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 99544 101469 . - . ID=Physo141108;Parent=Physo141108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 99544 101469 . - 0 ID=Physo141108;Parent=Physo141108;rank=1 scaffold_94 . exon 99544 101469 . - . ID=Physo141108.1;Parent=Physo141108;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 106147 108033 . - . ID=Physo141109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940020;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 106147 108033 . - . ID=Physo141109;Parent=Physo141109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . exon 106147 108033 . - . ID=Physo141109.1;Parent=Physo141109;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_94 . CDS 106159 108033 . - 0 ID=Physo141109;Parent=Physo141109;rank=1 scaffold_94 . repeat_region 111701 111754 . ? . description=dust scaffold_94 . repeat_region 116402 116439 . ? . description=dust scaffold_94 ensembl protein_coding_gene 109059 110975 . - . ID=Physo141110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940021;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 109059 110975 . - . ID=Physo141110;Parent=Physo141110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 109059 110975 . - 0 ID=Physo141110;Parent=Physo141110;rank=1 scaffold_94 . exon 109059 110975 . - . ID=Physo141110.1;Parent=Physo141110;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 113600 115516 . + . ID=Physo141111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940022;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 113600 115516 . + . ID=Physo141111;Parent=Physo141111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 113600 115516 . + 0 ID=Physo141111;Parent=Physo141111;rank=1 scaffold_94 . exon 113600 115516 . + . ID=Physo141111.1;Parent=Physo141111;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 116009 117641 . + . ID=Physo141112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940023;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 116009 117641 . + . ID=Physo141112;Parent=Physo141112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 116009 116120 . + 0 ID=Physo141112;Parent=Physo141112;rank=1 scaffold_94 . exon 116009 116120 . + . ID=Physo141112.1;Parent=Physo141112;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . CDS 116229 116390 . + 0 ID=Physo141112;Parent=Physo141112;rank=2 scaffold_94 . exon 116229 116390 . + . ID=Physo141112.2;Parent=Physo141112;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 116486 117019 . + 0 ID=Physo141112;Parent=Physo141112;rank=3 scaffold_94 . exon 116486 117019 . + . ID=Physo141112.3;Parent=Physo141112;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 117096 117474 . + 0 ID=Physo141112;Parent=Physo141112;rank=4 scaffold_94 . exon 117096 117474 . + . ID=Physo141112.4;Parent=Physo141112;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_94 . CDS 117557 117641 . + 0 ID=Physo141112;Parent=Physo141112;rank=5 scaffold_94 . exon 117557 117641 . + . ID=Physo141112.5;Parent=Physo141112;constitutive=1;ensembl_phase=2;rank=5 scaffold_94 . repeat_region 119823 120025 . - . description=Polinton-1_PI scaffold_94 . biological_region 121176 121176 0.999 + . logic_name=eponine scaffold_94 . biological_region 121441 121445 0.999 - . logic_name=eponine scaffold_94 . biological_region 122078 122081 0.999 - . logic_name=eponine scaffold_94 . biological_region 122154 122157 0.999 + . logic_name=eponine scaffold_94 . biological_region 122557 122562 0.999 - . logic_name=eponine scaffold_94 . biological_region 122908 122910 0.999 + . logic_name=eponine scaffold_94 . repeat_region 123132 123164 . ? . description=trf scaffold_94 . biological_region 123224 123226 0.999 + . logic_name=eponine scaffold_94 . biological_region 123441 123447 0.999 - . logic_name=eponine scaffold_94 . biological_region 124278 124279 0.999 - . logic_name=eponine scaffold_94 ensembl protein_coding_gene 120270 120590 . + . ID=Physo141113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940024;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 120270 120590 . + . ID=Physo141113;Parent=Physo141113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 120270 120590 . + 0 ID=Physo141113;Parent=Physo141113;rank=1 scaffold_94 . exon 120270 120590 . + . ID=Physo141113.1;Parent=Physo141113;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 120682 122580 . - . ID=Physo141114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940025;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 120682 122580 . - . ID=Physo141114;Parent=Physo141114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 120682 122580 . - 0 ID=Physo141114;Parent=Physo141114;rank=1 scaffold_94 . exon 120682 122580 . - . ID=Physo141114.1;Parent=Physo141114;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 123267 125076 . + . ID=Physo141115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940026;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 123267 125076 . + . ID=Physo141115;Parent=Physo141115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 123267 124907 . + 0 ID=Physo141115;Parent=Physo141115;rank=1 scaffold_94 . exon 123267 124907 . + . ID=Physo141115.1;Parent=Physo141115;constitutive=1;rank=1 scaffold_94 . CDS 124978 125076 . + 0 ID=Physo141115;Parent=Physo141115;rank=2 scaffold_94 . exon 124978 125076 . + . ID=Physo141115.2;Parent=Physo141115;constitutive=1;rank=2 scaffold_94 ensembl protein_coding_gene 125241 130697 . - . ID=Physo158283;biotype=protein_coding;external_name=C_scaffold_94000011;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 125241 130697 . - . ID=Physo158283;Parent=Physo158283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 125241 125381 . - 0 ID=Physo158283;Parent=Physo158283;rank=8 scaffold_94 . exon 125241 125381 . - . ID=Physo158283.8;Parent=Physo158283;constitutive=1;rank=8 scaffold_94 . CDS 125430 127115 . - 0 ID=Physo158283;Parent=Physo158283;rank=7 scaffold_94 . exon 125430 127115 . - . ID=Physo158283.7;Parent=Physo158283;constitutive=1;rank=7 scaffold_94 . CDS 127158 127658 . - 0 ID=Physo158283;Parent=Physo158283;rank=6 scaffold_94 . exon 127158 127658 . - . ID=Physo158283.6;Parent=Physo158283;constitutive=1;rank=6 scaffold_94 . CDS 127764 127960 . - 0 ID=Physo158283;Parent=Physo158283;rank=5 scaffold_94 . CDS 128075 128507 . - 0 ID=Physo158283;Parent=Physo158283;rank=4 scaffold_94 . CDS 128562 129010 . - 0 ID=Physo158283;Parent=Physo158283;rank=3 scaffold_94 . CDS 129188 129616 . - 0 ID=Physo158283;Parent=Physo158283;rank=2 scaffold_94 . CDS 130088 130697 . - 0 ID=Physo158283;Parent=Physo158283;rank=1 scaffold_94 . exon 127764 127960 . - . ID=Physo158283.5;Parent=Physo158283;constitutive=1;ensembl_phase=1;rank=5 scaffold_94 . exon 128075 128507 . - . ID=Physo158283.4;Parent=Physo158283;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_94 . exon 128562 129010 . - . ID=Physo158283.3;Parent=Physo158283;constitutive=1;ensembl_phase=1;rank=3 scaffold_94 . exon 129188 129616 . - . ID=Physo158283.2;Parent=Physo158283;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_94 . exon 130088 130697 . - . ID=Physo158283.1;Parent=Physo158283;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . biological_region 141758 141760 0.999 + . logic_name=eponine scaffold_94 . biological_region 143051 143052 0.999 + . logic_name=eponine scaffold_94 . biological_region 143061 143068 0.999 - . logic_name=eponine scaffold_94 . biological_region 143203 143205 0.999 - . logic_name=eponine scaffold_94 . biological_region 144019 144020 0.999 + . logic_name=eponine scaffold_94 ensembl protein_coding_gene 143748 144680 . + . ID=Physo121598;biotype=protein_coding;external_name=estExt_Genewise1.C_940007;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 143748 144680 . + . ID=Physo121598;Parent=Physo121598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . exon 143748 144680 . + . ID=Physo121598.1;Parent=Physo121598;constitutive=1;ensembl_phase=-1;rank=1 scaffold_94 . CDS 143784 144680 . + 0 ID=Physo121598;Parent=Physo121598;rank=1 scaffold_94 ensembl protein_coding_gene 139834 141460 . - . ID=Physo141117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940028;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 139834 141460 . - . ID=Physo141117;Parent=Physo141117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 139834 139837 . - 0 ID=Physo141117;Parent=Physo141117;rank=2 scaffold_94 . exon 139834 139837 . - . ID=Physo141117.2;Parent=Physo141117;constitutive=1;ensembl_phase=2;rank=2 scaffold_94 . CDS 139917 141460 . - 0 ID=Physo141117;Parent=Physo141117;rank=1 scaffold_94 . exon 139917 141460 . - . ID=Physo141117.1;Parent=Physo141117;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_94 ensembl protein_coding_gene 141701 142530 . - . ID=Physo141118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940029;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 141701 142530 . - . ID=Physo141118;Parent=Physo141118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 141701 142431 . - 0 ID=Physo141118;Parent=Physo141118;rank=2 scaffold_94 . exon 141701 142431 . - . ID=Physo141118.2;Parent=Physo141118;constitutive=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 142524 142530 . - 0 ID=Physo141118;Parent=Physo141118;rank=1 scaffold_94 . exon 142524 142530 . - . ID=Physo141118.1;Parent=Physo141118;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 ensembl protein_coding_gene 144789 148066 . - . ID=Physo141121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940032;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 144789 148066 . - . ID=Physo141121;Parent=Physo141121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 144789 146795 . - 0 ID=Physo141121;Parent=Physo141121;rank=6 scaffold_94 . exon 144789 146795 . - . ID=Physo141121.6;Parent=Physo141121;constitutive=1;rank=6 scaffold_94 . CDS 146910 147059 . - 0 ID=Physo141121;Parent=Physo141121;rank=5 scaffold_94 . exon 146910 147059 . - . ID=Physo141121.5;Parent=Physo141121;constitutive=1;rank=5 scaffold_94 . CDS 147139 147367 . - 0 ID=Physo141121;Parent=Physo141121;rank=4 scaffold_94 . CDS 147437 147623 . - 0 ID=Physo141121;Parent=Physo141121;rank=3 scaffold_94 . CDS 147714 147854 . - 0 ID=Physo141121;Parent=Physo141121;rank=2 scaffold_94 . CDS 147946 148066 . - 0 ID=Physo141121;Parent=Physo141121;rank=1 scaffold_94 . repeat_region 154180 154189 . ? . description=dust scaffold_94 ensembl protein_coding_gene 154128 155322 . + . ID=Physo109354;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_940002;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 154128 155322 . + . ID=Physo109354;Parent=Physo109354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . exon 154128 154155 . + . ID=Physo109354.1;Parent=Physo109354;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_94 . exon 154263 154350 . + . ID=Physo109354.2;Parent=Physo109354;constitutive=1;ensembl_phase=-1;rank=2 scaffold_94 . CDS 154270 154350 . + 0 ID=Physo109354;Parent=Physo109354;rank=1 scaffold_94 . CDS 154644 155180 . + 0 ID=Physo109354;Parent=Physo109354;rank=2 scaffold_94 . exon 154644 155322 . + . ID=Physo109354.3;Parent=Physo109354;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_94 . exon 147139 147367 . - . ID=Physo141121.4;Parent=Physo141121;constitutive=1;ensembl_phase=2;rank=4 scaffold_94 . exon 147437 147623 . - . ID=Physo141121.3;Parent=Physo141121;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_94 . exon 147714 147854 . - . ID=Physo141121.2;Parent=Physo141121;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_94 . exon 147946 148066 . - . ID=Physo141121.1;Parent=Physo141121;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 ensembl protein_coding_gene 155524 156990 . - . ID=Physo141124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940035;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 155524 156990 . - . ID=Physo141124;Parent=Physo141124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 155524 156990 . - 0 ID=Physo141124;Parent=Physo141124;rank=1 scaffold_94 . exon 155524 156990 . - . ID=Physo141124.1;Parent=Physo141124;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 148299 153793 . - . ID=Physo158285;biotype=protein_coding;external_name=C_scaffold_94000013;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 148299 153793 . - . ID=Physo158285;Parent=Physo158285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 148299 148415 . - 0 ID=Physo158285;Parent=Physo158285;rank=12 scaffold_94 . exon 148299 148415 . - . ID=Physo158285.12;Parent=Physo158285;constitutive=1;rank=12 scaffold_94 . CDS 148464 148670 . - 0 ID=Physo158285;Parent=Physo158285;rank=11 scaffold_94 . exon 148464 148670 . - . ID=Physo158285.11;Parent=Physo158285;constitutive=1;rank=11 scaffold_94 . CDS 148722 149288 . - 0 ID=Physo158285;Parent=Physo158285;rank=10 scaffold_94 . exon 148722 149288 . - . ID=Physo158285.10;Parent=Physo158285;constitutive=1;rank=10 scaffold_94 . CDS 149403 149621 . - 0 ID=Physo158285;Parent=Physo158285;rank=9 scaffold_94 . exon 149403 149621 . - . ID=Physo158285.9;Parent=Physo158285;constitutive=1;rank=9 scaffold_94 . CDS 149733 149925 . - 0 ID=Physo158285;Parent=Physo158285;rank=8 scaffold_94 . exon 149733 149925 . - . ID=Physo158285.8;Parent=Physo158285;constitutive=1;ensembl_phase=2;rank=8 scaffold_94 . CDS 150037 150632 . - 0 ID=Physo158285;Parent=Physo158285;rank=7 scaffold_94 . exon 150037 150632 . - . ID=Physo158285.7;Parent=Physo158285;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_94 . CDS 150690 150921 . - 0 ID=Physo158285;Parent=Physo158285;rank=6 scaffold_94 . exon 150690 150921 . - . ID=Physo158285.6;Parent=Physo158285;constitutive=1;ensembl_phase=2;rank=6 scaffold_94 . CDS 150995 151067 . - 0 ID=Physo158285;Parent=Physo158285;rank=5 scaffold_94 . exon 150995 151067 . - . ID=Physo158285.5;Parent=Physo158285;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_94 . CDS 151142 152110 . - 0 ID=Physo158285;Parent=Physo158285;rank=4 scaffold_94 . exon 151142 152110 . - . ID=Physo158285.4;Parent=Physo158285;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_94 . CDS 152375 153439 . - 0 ID=Physo158285;Parent=Physo158285;rank=3 scaffold_94 . exon 152375 153439 . - . ID=Physo158285.3;Parent=Physo158285;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 153608 153673 . - 0 ID=Physo158285;Parent=Physo158285;rank=2 scaffold_94 . exon 153608 153673 . - . ID=Physo158285.2;Parent=Physo158285;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 153778 153793 . - 0 ID=Physo158285;Parent=Physo158285;rank=1 scaffold_94 . exon 153778 153793 . - . ID=Physo158285.1;Parent=Physo158285;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . repeat_region 156999 157026 . ? . description=trf scaffold_94 . biological_region 157268 157272 0.999 - . logic_name=eponine scaffold_94 . biological_region 157298 157308 0.999 + . logic_name=eponine scaffold_94 . biological_region 157430 157434 0.999 - . logic_name=eponine scaffold_94 . biological_region 157451 157453 0.999 - . logic_name=eponine scaffold_94 . biological_region 157476 157477 0.999 - . logic_name=eponine scaffold_94 . biological_region 157487 157488 0.999 + . logic_name=eponine scaffold_94 . repeat_region 157604 157678 . ? . description=trf scaffold_94 . repeat_region 157607 157670 . ? . description=trf scaffold_94 . repeat_region 157625 157667 . ? . description=trf scaffold_94 . biological_region 158072 158075 0.999 - . logic_name=eponine scaffold_94 . repeat_region 161087 161131 . ? . description=trf scaffold_94 . repeat_region 161101 161147 . ? . description=trf scaffold_94 . repeat_region 161741 161766 . ? . description=trf scaffold_94 . biological_region 162321 162328 0.999 + . logic_name=eponine scaffold_94 . biological_region 162607 162609 0.999 - . logic_name=eponine scaffold_94 . biological_region 163049 163050 0.999 - . logic_name=eponine scaffold_94 . biological_region 163086 163087 0.999 + . logic_name=eponine scaffold_94 . biological_region 163532 163538 0.999 + . logic_name=eponine scaffold_94 . biological_region 163563 163565 0.999 + . logic_name=eponine scaffold_94 . biological_region 163630 163635 0.999 - . logic_name=eponine scaffold_94 . biological_region 163671 163672 0.999 - . logic_name=eponine scaffold_94 . biological_region 163676 163682 0.999 - . logic_name=eponine scaffold_94 . biological_region 164174 164179 0.999 + . logic_name=eponine scaffold_94 . biological_region 164213 164216 0.999 - . logic_name=eponine scaffold_94 . biological_region 165174 165178 0.999 - . logic_name=eponine scaffold_94 . biological_region 165196 165199 0.999 + . logic_name=eponine scaffold_94 . biological_region 165878 165884 0.999 + . logic_name=eponine scaffold_94 ensembl protein_coding_gene 157256 158569 . + . ID=Physo141125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940036;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 157256 158569 . + . ID=Physo141125;Parent=Physo141125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 157256 158569 . + 0 ID=Physo141125;Parent=Physo141125;rank=1 scaffold_94 . exon 157256 158569 . + . ID=Physo141125.1;Parent=Physo141125;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 158717 161453 . - . ID=Physo141126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940037;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 158717 161453 . - . ID=Physo141126;Parent=Physo141126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 158717 159705 . - 0 ID=Physo141126;Parent=Physo141126;rank=6 scaffold_94 . exon 158717 159705 . - . ID=Physo141126.6;Parent=Physo141126;constitutive=1;ensembl_phase=1;rank=6 scaffold_94 . CDS 159807 159900 . - 0 ID=Physo141126;Parent=Physo141126;rank=5 scaffold_94 . exon 159807 159900 . - . ID=Physo141126.5;Parent=Physo141126;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_94 . CDS 159981 160253 . - 0 ID=Physo141126;Parent=Physo141126;rank=4 scaffold_94 . exon 159981 160253 . - . ID=Physo141126.4;Parent=Physo141126;constitutive=1;rank=4 scaffold_94 . CDS 160327 160503 . - 0 ID=Physo141126;Parent=Physo141126;rank=3 scaffold_94 . exon 160327 160503 . - . ID=Physo141126.3;Parent=Physo141126;constitutive=1;rank=3 scaffold_94 . CDS 160571 161209 . - 0 ID=Physo141126;Parent=Physo141126;rank=2 scaffold_94 . exon 160571 161209 . - . ID=Physo141126.2;Parent=Physo141126;constitutive=1;rank=2 scaffold_94 . CDS 161298 161453 . - 0 ID=Physo141126;Parent=Physo141126;rank=1 scaffold_94 . exon 161298 161453 . - . ID=Physo141126.1;Parent=Physo141126;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 162323 163906 . - . ID=Physo141127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940038;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 162323 163906 . - . ID=Physo141127;Parent=Physo141127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 162323 163906 . - 0 ID=Physo141127;Parent=Physo141127;rank=1 scaffold_94 . exon 162323 163906 . - . ID=Physo141127.1;Parent=Physo141127;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 165601 166680 . - . ID=Physo141128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940039;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 165601 166680 . - . ID=Physo141128;Parent=Physo141128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 165601 165766 . - 0 ID=Physo141128;Parent=Physo141128;rank=3 scaffold_94 . exon 165601 165766 . - . ID=Physo141128.3;Parent=Physo141128;constitutive=1;ensembl_phase=2;rank=3 scaffold_94 . CDS 165876 166115 . - 0 ID=Physo141128;Parent=Physo141128;rank=2 scaffold_94 . exon 165876 166115 . - . ID=Physo141128.2;Parent=Physo141128;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_94 . CDS 166223 166680 . - 0 ID=Physo141128;Parent=Physo141128;rank=1 scaffold_94 . exon 166223 166680 . - . ID=Physo141128.1;Parent=Physo141128;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_94 . repeat_region 172051 172059 . ? . description=dust scaffold_94 . repeat_region 176295 176305 . ? . description=dust scaffold_94 ensembl protein_coding_gene 168630 170135 . - . ID=Physo141129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940040;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 168630 170135 . - . ID=Physo141129;Parent=Physo141129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 168630 170135 . - 0 ID=Physo141129;Parent=Physo141129;rank=1 scaffold_94 . exon 168630 170135 . - . ID=Physo141129.1;Parent=Physo141129;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 170488 172972 . + . ID=Physo141130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940041;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 170488 172972 . + . ID=Physo141130;Parent=Physo141130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 170488 170598 . + 0 ID=Physo141130;Parent=Physo141130;rank=1 scaffold_94 . exon 170488 170598 . + . ID=Physo141130.1;Parent=Physo141130;constitutive=1;rank=1 scaffold_94 . CDS 170669 171280 . + 0 ID=Physo141130;Parent=Physo141130;rank=2 scaffold_94 . exon 170669 171280 . + . ID=Physo141130.2;Parent=Physo141130;constitutive=1;rank=2 scaffold_94 . CDS 171493 171763 . + 0 ID=Physo141130;Parent=Physo141130;rank=3 scaffold_94 . exon 171493 171763 . + . ID=Physo141130.3;Parent=Physo141130;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_94 . CDS 171853 172035 . + 0 ID=Physo141130;Parent=Physo141130;rank=4 scaffold_94 . exon 171853 172035 . + . ID=Physo141130.4;Parent=Physo141130;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_94 . CDS 172110 172822 . + 0 ID=Physo141130;Parent=Physo141130;rank=5 scaffold_94 . exon 172110 172972 . + . ID=Physo141130.5;Parent=Physo141130;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_94 ensembl protein_coding_gene 174541 175719 . + . ID=Physo141132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940043;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 174541 175719 . + . ID=Physo141132;Parent=Physo141132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 174541 175719 . + 0 ID=Physo141132;Parent=Physo141132;rank=1 scaffold_94 . exon 174541 175719 . + . ID=Physo141132.1;Parent=Physo141132;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 173001 174196 . - . ID=Physo158288;biotype=protein_coding;external_name=C_scaffold_94000016;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 173001 174196 . - . ID=Physo158288;Parent=Physo158288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 173001 173547 . - 0 ID=Physo158288;Parent=Physo158288;rank=4 scaffold_94 . exon 173001 173547 . - . ID=Physo158288.4;Parent=Physo158288;constitutive=1;ensembl_phase=2;rank=4 scaffold_94 . CDS 173593 173660 . - 0 ID=Physo158288;Parent=Physo158288;rank=3 scaffold_94 . exon 173593 173660 . - . ID=Physo158288.3;Parent=Physo158288;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_94 . CDS 173743 173952 . - 0 ID=Physo158288;Parent=Physo158288;rank=2 scaffold_94 . exon 173743 173952 . - . ID=Physo158288.2;Parent=Physo158288;constitutive=1;rank=2 scaffold_94 . CDS 174173 174196 . - 0 ID=Physo158288;Parent=Physo158288;rank=1 scaffold_94 . exon 174173 174196 . - . ID=Physo158288.1;Parent=Physo158288;constitutive=1;rank=1 scaffold_94 . repeat_region 178524 178566 . ? . description=trf scaffold_94 . biological_region 184578 184579 0.999 - . logic_name=eponine scaffold_94 ensembl protein_coding_gene 176650 177392 . - . ID=Physo141133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940044;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 176650 177392 . - . ID=Physo141133;Parent=Physo141133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 176650 176676 . - 0 ID=Physo141133;Parent=Physo141133;rank=2 scaffold_94 . exon 176650 176676 . - . ID=Physo141133.2;Parent=Physo141133;constitutive=1;rank=2 scaffold_94 . CDS 176787 177392 . - 0 ID=Physo141133;Parent=Physo141133;rank=1 scaffold_94 . exon 176787 177392 . - . ID=Physo141133.1;Parent=Physo141133;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 182257 183945 . - . ID=Physo141134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940045;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 182257 183945 . - . ID=Physo141134;Parent=Physo141134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 182257 183945 . - 0 ID=Physo141134;Parent=Physo141134;rank=1 scaffold_94 . exon 182257 183945 . - . ID=Physo141134.1;Parent=Physo141134;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 184459 185398 . + . ID=Physo141135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940046;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 184459 185398 . + . ID=Physo141135;Parent=Physo141135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 184459 184648 . + 0 ID=Physo141135;Parent=Physo141135;rank=1 scaffold_94 . exon 184459 184648 . + . ID=Physo141135.1;Parent=Physo141135;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . CDS 184734 184792 . + 0 ID=Physo141135;Parent=Physo141135;rank=2 scaffold_94 . exon 184734 184792 . + . ID=Physo141135.2;Parent=Physo141135;constitutive=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 184878 184955 . + 0 ID=Physo141135;Parent=Physo141135;rank=3 scaffold_94 . exon 184878 184955 . + . ID=Physo141135.3;Parent=Physo141135;constitutive=1;rank=3 scaffold_94 . CDS 185027 185152 . + 0 ID=Physo141135;Parent=Physo141135;rank=4 scaffold_94 . exon 185027 185152 . + . ID=Physo141135.4;Parent=Physo141135;constitutive=1;rank=4 scaffold_94 . CDS 185240 185398 . + 0 ID=Physo141135;Parent=Physo141135;rank=5 scaffold_94 . exon 185240 185398 . + . ID=Physo141135.5;Parent=Physo141135;constitutive=1;rank=5 scaffold_94 . repeat_region 187750 187757 . ? . description=dust scaffold_94 . repeat_region 192409 192416 . ? . description=dust scaffold_94 ensembl protein_coding_gene 186988 188440 . - . ID=Physo141136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940047;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 186988 188440 . - . ID=Physo141136;Parent=Physo141136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 186988 187845 . - 0 ID=Physo141136;Parent=Physo141136;rank=2 scaffold_94 . exon 186988 187845 . - . ID=Physo141136.2;Parent=Physo141136;constitutive=1;rank=2 scaffold_94 . CDS 187922 188440 . - 0 ID=Physo141136;Parent=Physo141136;rank=1 scaffold_94 . exon 187922 188440 . - . ID=Physo141136.1;Parent=Physo141136;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 196366 197603 . - . ID=Physo141137;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940048;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 196366 197603 . - . ID=Physo141137;Parent=Physo141137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 196366 196407 . - 0 ID=Physo141137;Parent=Physo141137;rank=3 scaffold_94 . exon 196366 196407 . - . ID=Physo141137.3;Parent=Physo141137;constitutive=1;rank=3 scaffold_94 . CDS 196457 196990 . - 0 ID=Physo141137;Parent=Physo141137;rank=2 scaffold_94 . exon 196457 196990 . - . ID=Physo141137.2;Parent=Physo141137;constitutive=1;rank=2 scaffold_94 . CDS 197025 197603 . - 0 ID=Physo141137;Parent=Physo141137;rank=1 scaffold_94 . exon 197025 197603 . - . ID=Physo141137.1;Parent=Physo141137;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 203449 205109 . - . ID=Physo141138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940049;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 203449 205109 . - . ID=Physo141138;Parent=Physo141138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 203449 204869 . - 0 ID=Physo141138;Parent=Physo141138;rank=2 scaffold_94 . exon 203449 204869 . - . ID=Physo141138.2;Parent=Physo141138;constitutive=1;ensembl_phase=1;rank=2 scaffold_94 . CDS 204944 205109 . - 0 ID=Physo141138;Parent=Physo141138;rank=1 scaffold_94 . exon 204944 205109 . - . ID=Physo141138.1;Parent=Physo141138;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . repeat_region 206400 206488 . ? . description=dust scaffold_94 . biological_region 208223 208226 0.999 - . logic_name=eponine scaffold_94 . repeat_region 209310 210145 . ? . description=dust scaffold_94 . repeat_region 210279 210359 . ? . description=trf scaffold_94 . repeat_region 210429 210491 . ? . description=trf scaffold_94 . repeat_region 211783 211864 . ? . description=dust scaffold_94 . repeat_region 212431 212483 . ? . description=trf scaffold_94 . repeat_region 213036 214288 . ? . description=dust scaffold_94 . repeat_region 225035 237463 . ? . description=dust scaffold_94 . biological_region 237829 237832 0.999 + . logic_name=eponine scaffold_94 . biological_region 239085 239089 0.999 + . logic_name=eponine scaffold_94 . biological_region 243072 243079 0.999 - . logic_name=eponine scaffold_94 . repeat_region 244221 244250 . ? . description=trf scaffold_94 ensembl protein_coding_gene 244836 245144 . - . ID=Physo141139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940050;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 244836 245144 . - . ID=Physo141139;Parent=Physo141139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 244836 245144 . - 0 ID=Physo141139;Parent=Physo141139;rank=1 scaffold_94 . exon 244836 245144 . - . ID=Physo141139.1;Parent=Physo141139;constitutive=1;rank=1 scaffold_94 . repeat_region 251636 251647 . ? . description=dust scaffold_94 ensembl protein_coding_gene 251913 253021 . + . ID=Physo109355;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_940003;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 251913 253021 . + . ID=Physo109355;Parent=Physo109355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . exon 251913 253021 . + . ID=Physo109355.1;Parent=Physo109355;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_94 . CDS 251958 252893 . + 0 ID=Physo109355;Parent=Physo109355;rank=1 scaffold_94 ensembl protein_coding_gene 248092 248667 . + . ID=Physo141140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940051;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 248092 248667 . + . ID=Physo141140;Parent=Physo141140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . exon 248092 248409 . + . ID=Physo141140.1;Parent=Physo141140;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_94 . CDS 248094 248409 . + 0 ID=Physo141140;Parent=Physo141140;rank=1 scaffold_94 . CDS 248524 248666 . + 0 ID=Physo141140;Parent=Physo141140;rank=2 scaffold_94 . exon 248524 248667 . + . ID=Physo141140.2;Parent=Physo141140;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_94 ensembl protein_coding_gene 248894 250663 . + . ID=Physo141141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940052;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 248894 250663 . + . ID=Physo141141;Parent=Physo141141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 248894 250663 . + 0 ID=Physo141141;Parent=Physo141141;rank=1 scaffold_94 . exon 248894 250663 . + . ID=Physo141141.1;Parent=Physo141141;constitutive=1;rank=1 scaffold_94 . biological_region 261669 261671 0.999 + . logic_name=eponine scaffold_94 . biological_region 261912 261913 0.999 - . logic_name=eponine scaffold_94 . biological_region 262093 262096 0.999 + . logic_name=eponine scaffold_94 . biological_region 262114 262119 0.999 + . logic_name=eponine scaffold_94 ensembl protein_coding_gene 258598 259229 . - . ID=Physo141143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940054;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 258598 259229 . - . ID=Physo141143;Parent=Physo141143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . exon 258598 259229 . - . ID=Physo141143.1;Parent=Physo141143;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_94 . CDS 258663 259202 . - 0 ID=Physo141143;Parent=Physo141143;rank=1 scaffold_94 ensembl protein_coding_gene 259528 260393 . + . ID=Physo158293;biotype=protein_coding;external_name=C_scaffold_94000021;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 259528 260393 . + . ID=Physo158293;Parent=Physo158293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 259528 259698 . + 0 ID=Physo158293;Parent=Physo158293;rank=1 scaffold_94 . exon 259528 259698 . + . ID=Physo158293.1;Parent=Physo158293;constitutive=1;rank=1 scaffold_94 . CDS 259759 259994 . + 0 ID=Physo158293;Parent=Physo158293;rank=2 scaffold_94 . exon 259759 259994 . + . ID=Physo158293.2;Parent=Physo158293;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_94 . CDS 260060 260393 . + 0 ID=Physo158293;Parent=Physo158293;rank=3 scaffold_94 . exon 260060 260393 . + . ID=Physo158293.3;Parent=Physo158293;constitutive=1;ensembl_phase=2;rank=3 scaffold_94 ensembl protein_coding_gene 260535 261623 . - . ID=Physo158296;biotype=protein_coding;external_name=C_scaffold_94000024;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 260535 261623 . - . ID=Physo158296;Parent=Physo158296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 260535 260554 . - 0 ID=Physo158296;Parent=Physo158296;rank=7 scaffold_94 . exon 260535 260554 . - . ID=Physo158296.7;Parent=Physo158296;constitutive=1;ensembl_phase=1;rank=7 scaffold_94 . CDS 260597 260660 . - 0 ID=Physo158296;Parent=Physo158296;rank=6 scaffold_94 . exon 260597 260660 . - . ID=Physo158296.6;Parent=Physo158296;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_94 . CDS 260744 260865 . - 0 ID=Physo158296;Parent=Physo158296;rank=5 scaffold_94 . exon 260744 260865 . - . ID=Physo158296.5;Parent=Physo158296;constitutive=1;ensembl_phase=1;rank=5 scaffold_94 . CDS 260944 261152 . - 0 ID=Physo158296;Parent=Physo158296;rank=4 scaffold_94 . exon 260944 261152 . - . ID=Physo158296.4;Parent=Physo158296;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_94 . CDS 261230 261303 . - 0 ID=Physo158296;Parent=Physo158296;rank=3 scaffold_94 . exon 261230 261303 . - . ID=Physo158296.3;Parent=Physo158296;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_94 . CDS 261379 261444 . - 0 ID=Physo158296;Parent=Physo158296;rank=2 scaffold_94 . exon 261379 261444 . - . ID=Physo158296.2;Parent=Physo158296;constitutive=1;rank=2 scaffold_94 . CDS 261567 261623 . - 0 ID=Physo158296;Parent=Physo158296;rank=1 scaffold_94 . exon 261567 261623 . - . ID=Physo158296.1;Parent=Physo158296;constitutive=1;rank=1 scaffold_94 ensembl protein_coding_gene 262102 263501 . + . ID=Physo158298;biotype=protein_coding;external_name=C_scaffold_94000026;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 262102 263501 . + . ID=Physo158298;Parent=Physo158298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 262102 262677 . + 0 ID=Physo158298;Parent=Physo158298;rank=1 scaffold_94 . exon 262102 262677 . + . ID=Physo158298.1;Parent=Physo158298;constitutive=1;rank=1 scaffold_94 . CDS 262751 263081 . + 0 ID=Physo158298;Parent=Physo158298;rank=2 scaffold_94 . exon 262751 263081 . + . ID=Physo158298.2;Parent=Physo158298;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_94 . CDS 263166 263404 . + 0 ID=Physo158298;Parent=Physo158298;rank=3 scaffold_94 . exon 263166 263404 . + . ID=Physo158298.3;Parent=Physo158298;constitutive=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 263451 263501 . + 0 ID=Physo158298;Parent=Physo158298;rank=4 scaffold_94 . exon 263451 263501 . + . ID=Physo158298.4;Parent=Physo158298;constitutive=1;rank=4 scaffold_94 . repeat_region 265834 265870 . ? . description=trf scaffold_94 . repeat_region 266467 266475 . ? . description=dust scaffold_94 . repeat_region 269876 269899 . ? . description=dust scaffold_94 . repeat_region 272735 272774 . ? . description=trf scaffold_94 . repeat_region 273002 273011 . ? . description=dust scaffold_94 ensembl protein_coding_gene 265070 266456 . + . ID=Physo141147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940058;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 265070 266456 . + . ID=Physo141147;Parent=Physo141147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 265070 266141 . + 0 ID=Physo141147;Parent=Physo141147;rank=1 scaffold_94 . exon 265070 266141 . + . ID=Physo141147.1;Parent=Physo141147;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_94 . CDS 266225 266240 . + 0 ID=Physo141147;Parent=Physo141147;rank=2 scaffold_94 . exon 266225 266240 . + . ID=Physo141147.2;Parent=Physo141147;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_94 . CDS 266309 266456 . + 0 ID=Physo141147;Parent=Physo141147;rank=3 scaffold_94 . exon 266309 266456 . + . ID=Physo141147.3;Parent=Physo141147;constitutive=1;ensembl_phase=2;rank=3 scaffold_94 ensembl protein_coding_gene 266680 268266 . + . ID=Physo141148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940059;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 266680 268266 . + . ID=Physo141148;Parent=Physo141148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 266680 266798 . + 0 ID=Physo141148;Parent=Physo141148;rank=1 scaffold_94 . exon 266680 266798 . + . ID=Physo141148.1;Parent=Physo141148;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_94 . CDS 266873 266973 . + 0 ID=Physo141148;Parent=Physo141148;rank=2 scaffold_94 . exon 266873 266973 . + . ID=Physo141148.2;Parent=Physo141148;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_94 . CDS 267000 267163 . + 0 ID=Physo141148;Parent=Physo141148;rank=3 scaffold_94 . exon 267000 267163 . + . ID=Physo141148.3;Parent=Physo141148;constitutive=1;ensembl_phase=1;rank=3 scaffold_94 . CDS 267237 267477 . + 0 ID=Physo141148;Parent=Physo141148;rank=4 scaffold_94 . exon 267237 267477 . + . ID=Physo141148.4;Parent=Physo141148;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_94 . CDS 267556 267782 . + 0 ID=Physo141148;Parent=Physo141148;rank=5 scaffold_94 . exon 267556 267782 . + . ID=Physo141148.5;Parent=Physo141148;constitutive=1;ensembl_phase=1;rank=5 scaffold_94 . CDS 267858 268011 . + 0 ID=Physo141148;Parent=Physo141148;rank=6 scaffold_94 . exon 267858 268011 . + . ID=Physo141148.6;Parent=Physo141148;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_94 . CDS 268086 268150 . + 0 ID=Physo141148;Parent=Physo141148;rank=7 scaffold_94 . exon 268086 268266 . + . ID=Physo141148.7;Parent=Physo141148;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_94 ensembl protein_coding_gene 271123 271425 . + . ID=Physo141149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940060;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 271123 271425 . + . ID=Physo141149;Parent=Physo141149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 271123 271425 . + 0 ID=Physo141149;Parent=Physo141149;rank=1 scaffold_94 . exon 271123 271425 . + . ID=Physo141149.1;Parent=Physo141149;constitutive=1;rank=1 scaffold_94 . biological_region 278964 278966 0.999 - . logic_name=eponine scaffold_94 . repeat_region 286955 286962 . ? . description=dust scaffold_94 . repeat_region 289154 289179 . ? . description=dust scaffold_94 . repeat_region 290014 290026 . ? . description=dust scaffold_94 . repeat_region 292118 292125 . ? . description=dust scaffold_94 ensembl protein_coding_gene 298286 299665 . - . ID=Physo141150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940061;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 298286 299665 . - . ID=Physo141150;Parent=Physo141150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 298286 299665 . - 0 ID=Physo141150;Parent=Physo141150;rank=1 scaffold_94 . exon 298286 299665 . - . ID=Physo141150.1;Parent=Physo141150;constitutive=1;rank=1 scaffold_94 . biological_region 304213 304216 0.999 + . logic_name=eponine scaffold_94 . biological_region 304241 304244 0.999 - . logic_name=eponine scaffold_94 . biological_region 304275 304281 0.999 - . logic_name=eponine scaffold_94 . biological_region 304347 304347 0.999 + . logic_name=eponine scaffold_94 . repeat_region 304639 304693 . ? . description=trf scaffold_94 . biological_region 304698 304701 0.999 + . logic_name=eponine scaffold_94 . biological_region 304726 304727 0.999 + . logic_name=eponine scaffold_94 . biological_region 304746 304747 0.999 + . logic_name=eponine scaffold_94 . biological_region 304775 304777 0.999 + . logic_name=eponine scaffold_94 . biological_region 304779 304785 0.999 - . logic_name=eponine scaffold_94 . repeat_region 304836 304882 . ? . description=trf scaffold_94 . biological_region 304864 304869 0.999 + . logic_name=eponine scaffold_94 . biological_region 304882 304887 0.999 - . logic_name=eponine scaffold_94 . repeat_region 304960 305492 . + . description=GypsyPi-1c_I-int scaffold_94 . repeat_region 305497 307208 . + . description=GypsyPi-1c_I-int scaffold_94 . biological_region 306102 306103 0.999 - . logic_name=eponine scaffold_94 . repeat_region 307276 323253 . ? . description=dust scaffold_94 ensembl protein_coding_gene 305125 306039 . + . ID=Physo141151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940062;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 305125 306039 . + . ID=Physo141151;Parent=Physo141151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 305125 306039 . + 0 ID=Physo141151;Parent=Physo141151;rank=1 scaffold_94 . exon 305125 306039 . + . ID=Physo141151.1;Parent=Physo141151;constitutive=1;rank=1 scaffold_94 . repeat_region 323254 324399 . ? . description=trf scaffold_94 . biological_region 324111 324112 0.999 + . logic_name=eponine scaffold_94 . biological_region 324277 324278 0.999 + . logic_name=eponine scaffold_94 . repeat_region 324400 329560 . ? . description=dust scaffold_94 . repeat_region 329796 329825 . ? . description=trf scaffold_94 . repeat_region 330938 332133 . ? . description=dust scaffold_94 ensembl protein_coding_gene 330431 330871 . - . ID=Physo141152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_940063;logic_name=jgi_physo1_1 scaffold_94 ensembl transcript 330431 330871 . - . ID=Physo141152;Parent=Physo141152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_94 . CDS 330431 330871 . - 0 ID=Physo141152;Parent=Physo141152;rank=1 scaffold_94 . exon 330431 330871 . - . ID=Physo141152.1;Parent=Physo141152;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_93 1 334713 scaffold_93 . repeat_region 38 933 . - . description=GypsyPi-1c_I-int scaffold_93 . biological_region 836 841 0.999 + . logic_name=eponine scaffold_93 . biological_region 1282 1286 0.999 + . logic_name=eponine scaffold_93 . repeat_region 1386 1541 . ? . description=trf scaffold_93 . repeat_region 1409 1544 . ? . description=trf scaffold_93 . biological_region 1876 1877 0.999 + . logic_name=eponine scaffold_93 . biological_region 2213 2215 0.999 + . logic_name=eponine scaffold_93 . biological_region 2237 2242 0.999 - . logic_name=eponine scaffold_93 . biological_region 2434 2435 0.999 + . logic_name=eponine scaffold_93 . repeat_region 5314 5349 . ? . description=trf scaffold_93 . repeat_region 7465 7496 . ? . description=trf scaffold_93 ensembl protein_coding_gene 160 2108 . - . ID=Physo141018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930001;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 160 2108 . - . ID=Physo141018;Parent=Physo141018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 160 928 . - . ID=Physo141018.3;Parent=Physo141018;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_93 . CDS 161 928 . - 0 ID=Physo141018;Parent=Physo141018;rank=3 scaffold_93 . CDS 955 1995 . - 0 ID=Physo141018;Parent=Physo141018;rank=2 scaffold_93 . exon 955 1995 . - . ID=Physo141018.2;Parent=Physo141018;constitutive=1;rank=2 scaffold_93 . CDS 2034 2108 . - 0 ID=Physo141018;Parent=Physo141018;rank=1 scaffold_93 . exon 2034 2108 . - . ID=Physo141018.1;Parent=Physo141018;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 2372 3256 . - . ID=Physo141019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930002;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 2372 3256 . - . ID=Physo141019;Parent=Physo141019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 2372 3256 . - 0 ID=Physo141019;Parent=Physo141019;rank=1 scaffold_93 . exon 2372 3256 . - . ID=Physo141019.1;Parent=Physo141019;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 5874 7708 . - . ID=Physo141020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930003;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 5874 7708 . - . ID=Physo141020;Parent=Physo141020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 5874 6263 . - 0 ID=Physo141020;Parent=Physo141020;rank=3 scaffold_93 . exon 5874 6263 . - . ID=Physo141020.3;Parent=Physo141020;constitutive=1;rank=3 scaffold_93 . CDS 6328 6602 . - 0 ID=Physo141020;Parent=Physo141020;rank=2 scaffold_93 . exon 6328 6602 . - . ID=Physo141020.2;Parent=Physo141020;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 6661 7708 . - 0 ID=Physo141020;Parent=Physo141020;rank=1 scaffold_93 . exon 6661 7708 . - . ID=Physo141020.1;Parent=Physo141020;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 ensembl protein_coding_gene 8126 8719 . + . ID=Physo141021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930004;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 8126 8719 . + . ID=Physo141021;Parent=Physo141021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 8126 8719 . + 0 ID=Physo141021;Parent=Physo141021;rank=1 scaffold_93 . exon 8126 8719 . + . ID=Physo141021.1;Parent=Physo141021;constitutive=1;rank=1 scaffold_93 . repeat_region 13845 27893 . ? . description=dust scaffold_93 ensembl protein_coding_gene 11153 13662 . - . ID=Physo141022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930005;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 11153 13662 . - . ID=Physo141022;Parent=Physo141022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 11153 13131 . - 0 ID=Physo141022;Parent=Physo141022;rank=2 scaffold_93 . exon 11153 13131 . - . ID=Physo141022.2;Parent=Physo141022;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 13173 13662 . - 0 ID=Physo141022;Parent=Physo141022;rank=1 scaffold_93 . exon 13173 13662 . - . ID=Physo141022.1;Parent=Physo141022;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . repeat_region 27894 33558 . ? . description=dust scaffold_93 . repeat_region 34824 34878 . ? . description=trf scaffold_93 . repeat_region 34832 34839 . ? . description=dust scaffold_93 . repeat_region 35642 35787 . ? . description=trf scaffold_93 . repeat_region 36138 36145 . ? . description=dust scaffold_93 . repeat_region 36694 36701 . ? . description=dust scaffold_93 . repeat_region 39045 39073 . ? . description=dust scaffold_93 . biological_region 40385 40389 0.999 - . logic_name=eponine scaffold_93 ensembl protein_coding_gene 45586 46378 . - . ID=Physo141023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930006;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 45586 46378 . - . ID=Physo141023;Parent=Physo141023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 45586 46378 . - . ID=Physo141023.1;Parent=Physo141023;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_93 . CDS 45731 46378 . - 0 ID=Physo141023;Parent=Physo141023;rank=1 scaffold_93 . repeat_region 49214 49277 . ? . description=dust scaffold_93 . repeat_region 49226 49274 . ? . description=trf scaffold_93 . repeat_region 57058 57065 . ? . description=dust scaffold_93 ensembl protein_coding_gene 58168 61320 . - . ID=Physo141024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930007;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 58168 61320 . - . ID=Physo141024;Parent=Physo141024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 58168 59891 . - 0 ID=Physo141024;Parent=Physo141024;rank=5 scaffold_93 . exon 58168 59891 . - . ID=Physo141024.5;Parent=Physo141024;constitutive=1;ensembl_phase=1;rank=5 scaffold_93 . CDS 59936 60440 . - 0 ID=Physo141024;Parent=Physo141024;rank=4 scaffold_93 . CDS 60493 60643 . - 0 ID=Physo141024;Parent=Physo141024;rank=3 scaffold_93 . CDS 60692 61148 . - 0 ID=Physo141024;Parent=Physo141024;rank=2 scaffold_93 . CDS 61311 61320 . - 0 ID=Physo141024;Parent=Physo141024;rank=1 scaffold_93 . biological_region 59815 59817 0.999 - . logic_name=eponine scaffold_93 . biological_region 60530 60533 0.999 + . logic_name=eponine scaffold_93 . biological_region 60692 60692 0.999 + . logic_name=eponine scaffold_93 . biological_region 61045 61047 0.999 - . logic_name=eponine scaffold_93 . biological_region 64024 64027 0.999 - . logic_name=eponine scaffold_93 . biological_region 64173 64175 0.999 - . logic_name=eponine scaffold_93 . biological_region 64725 64730 0.999 + . logic_name=eponine scaffold_93 . repeat_region 65278 66059 . - . description=GypsyPi-1c_I-int scaffold_93 . biological_region 65397 65402 0.999 + . logic_name=eponine scaffold_93 . biological_region 65847 65850 0.999 - . logic_name=eponine scaffold_93 . biological_region 66180 66184 0.999 + . logic_name=eponine scaffold_93 . repeat_region 66332 67487 . - . description=GypsyPi-1c_I-int scaffold_93 . biological_region 67396 67401 0.999 + . logic_name=eponine scaffold_93 . biological_region 67531 67535 0.999 - . logic_name=eponine scaffold_93 . biological_region 67844 67848 0.999 + . logic_name=eponine scaffold_93 . biological_region 68463 68464 0.999 + . logic_name=eponine scaffold_93 . biological_region 68800 68802 0.999 + . logic_name=eponine scaffold_93 . biological_region 68824 68829 0.999 - . logic_name=eponine scaffold_93 ensembl pseudogenic_tRNA 64120 64191 . + . ID=EPrPSOG00000000004;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_93 ensembl transcript 64120 64191 . + . ID=EPrPSOT00000000004;Parent=EPrPSOG00000000004;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_93 . exon 64120 64191 . + . ID=EPrPSOE00000000004;Parent=EPrPSOT00000000004;constitutive=1;rank=1 scaffold_93 . exon 59936 60440 . - . ID=Physo141024.4;Parent=Physo141024;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_93 . exon 60493 60643 . - . ID=Physo141024.3;Parent=Physo141024;constitutive=1;ensembl_phase=2;rank=3 scaffold_93 . exon 60692 61148 . - . ID=Physo141024.2;Parent=Physo141024;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_93 . exon 61311 61320 . - . ID=Physo141024.1;Parent=Physo141024;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 ensembl protein_coding_gene 64270 68695 . - . ID=Physo141025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930008;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 64270 68695 . - . ID=Physo141025;Parent=Physo141025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 64270 66127 . - 0 ID=Physo141025;Parent=Physo141025;rank=7 scaffold_93 . exon 64270 66127 . - . ID=Physo141025.7;Parent=Physo141025;constitutive=1;ensembl_phase=2;rank=7 scaffold_93 . CDS 66201 66348 . - 0 ID=Physo141025;Parent=Physo141025;rank=6 scaffold_93 . exon 66201 66348 . - . ID=Physo141025.6;Parent=Physo141025;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_93 . CDS 66721 67103 . - 0 ID=Physo141025;Parent=Physo141025;rank=5 scaffold_93 . exon 66721 67103 . - . ID=Physo141025.5;Parent=Physo141025;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_93 . CDS 67124 67517 . - 0 ID=Physo141025;Parent=Physo141025;rank=4 scaffold_93 . exon 67124 67517 . - . ID=Physo141025.4;Parent=Physo141025;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_93 . CDS 67708 68281 . - 0 ID=Physo141025;Parent=Physo141025;rank=3 scaffold_93 . exon 67708 68281 . - . ID=Physo141025.3;Parent=Physo141025;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_93 . CDS 68355 68582 . - 0 ID=Physo141025;Parent=Physo141025;rank=2 scaffold_93 . exon 68355 68582 . - . ID=Physo141025.2;Parent=Physo141025;constitutive=1;rank=2 scaffold_93 . CDS 68621 68695 . - 0 ID=Physo141025;Parent=Physo141025;rank=1 scaffold_93 . exon 68621 68695 . - . ID=Physo141025.1;Parent=Physo141025;constitutive=1;rank=1 scaffold_93 . repeat_region 71901 71936 . ? . description=trf scaffold_93 . repeat_region 72459 72508 . ? . description=dust scaffold_93 . repeat_region 72572 72603 . ? . description=trf scaffold_93 . repeat_region 73674 73723 . ? . description=dust scaffold_93 . repeat_region 74541 74590 . ? . description=dust scaffold_93 . repeat_region 76228 76734 . ? . description=dust scaffold_93 . repeat_region 77428 77435 . ? . description=dust scaffold_93 ensembl protein_coding_gene 68959 69843 . - . ID=Physo141026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930009;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 68959 69843 . - . ID=Physo141026;Parent=Physo141026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 68959 69843 . - 0 ID=Physo141026;Parent=Physo141026;rank=1 scaffold_93 . exon 68959 69843 . - . ID=Physo141026.1;Parent=Physo141026;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 73306 74003 . + . ID=Physo141027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930010;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 73306 74003 . + . ID=Physo141027;Parent=Physo141027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 73306 73661 . + 0 ID=Physo141027;Parent=Physo141027;rank=1 scaffold_93 . exon 73306 73661 . + . ID=Physo141027.1;Parent=Physo141027;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . CDS 73937 74003 . + 0 ID=Physo141027;Parent=Physo141027;rank=2 scaffold_93 . exon 73937 74003 . + . ID=Physo141027.2;Parent=Physo141027;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . biological_region 84432 84434 0.999 + . logic_name=eponine scaffold_93 . repeat_region 87881 88842 . - . description=Polinton-1_PI scaffold_93 ensembl protein_coding_gene 84501 87896 . + . ID=Physo141028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930011;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 84501 87896 . + . ID=Physo141028;Parent=Physo141028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 84501 85053 . + 0 ID=Physo141028;Parent=Physo141028;rank=1 scaffold_93 . exon 84501 85053 . + . ID=Physo141028.1;Parent=Physo141028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . CDS 85082 85134 . + 0 ID=Physo141028;Parent=Physo141028;rank=2 scaffold_93 . exon 85082 85134 . + . ID=Physo141028.2;Parent=Physo141028;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 85203 86953 . + 0 ID=Physo141028;Parent=Physo141028;rank=3 scaffold_93 . exon 85203 86953 . + . ID=Physo141028.3;Parent=Physo141028;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_93 . CDS 87404 87776 . + 0 ID=Physo141028;Parent=Physo141028;rank=4 scaffold_93 . exon 87404 87776 . + . ID=Physo141028.4;Parent=Physo141028;constitutive=1;ensembl_phase=2;rank=4 scaffold_93 . CDS 87813 87896 . + 0 ID=Physo141028;Parent=Physo141028;rank=5 scaffold_93 . exon 87813 87896 . + . ID=Physo141028.5;Parent=Physo141028;constitutive=1;rank=5 scaffold_93 . repeat_region 88914 88924 . ? . description=dust scaffold_93 . repeat_region 93964 94000 . ? . description=trf scaffold_93 . repeat_region 96243 96278 . ? . description=trf scaffold_93 . repeat_region 96243 96285 . ? . description=dust scaffold_93 ensembl protein_coding_gene 96314 99954 . + . ID=Physo141031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930014;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 96314 99954 . + . ID=Physo141031;Parent=Physo141031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 96314 98029 . + 0 ID=Physo141031;Parent=Physo141031;rank=1 scaffold_93 . exon 96314 98029 . + . ID=Physo141031.1;Parent=Physo141031;constitutive=1;rank=1 scaffold_93 . CDS 98185 99954 . + 0 ID=Physo141031;Parent=Physo141031;rank=2 scaffold_93 . exon 98185 99954 . + . ID=Physo141031.2;Parent=Physo141031;constitutive=1;rank=2 scaffold_93 ensembl protein_coding_gene 89247 91334 . - . ID=Physo158246;biotype=protein_coding;external_name=C_scaffold_93000001;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 89247 91334 . - . ID=Physo158246;Parent=Physo158246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 89247 90190 . - 0 ID=Physo158246;Parent=Physo158246;rank=4 scaffold_93 . exon 89247 90190 . - . ID=Physo158246.4;Parent=Physo158246;constitutive=1;ensembl_phase=1;rank=4 scaffold_93 . CDS 90233 90302 . - 0 ID=Physo158246;Parent=Physo158246;rank=3 scaffold_93 . exon 90233 90302 . - . ID=Physo158246.3;Parent=Physo158246;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_93 . CDS 90393 90782 . - 0 ID=Physo158246;Parent=Physo158246;rank=2 scaffold_93 . exon 90393 90782 . - . ID=Physo158246.2;Parent=Physo158246;constitutive=1;rank=2 scaffold_93 . CDS 90831 91334 . - 0 ID=Physo158246;Parent=Physo158246;rank=1 scaffold_93 . exon 90831 91334 . - . ID=Physo158246.1;Parent=Physo158246;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 94563 96001 . - . ID=Physo158247;biotype=protein_coding;external_name=C_scaffold_93000002;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 94563 96001 . - . ID=Physo158247;Parent=Physo158247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 94563 94945 . - 0 ID=Physo158247;Parent=Physo158247;rank=8 scaffold_93 . exon 94563 94945 . - . ID=Physo158247.8;Parent=Physo158247;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_93 . CDS 95015 95069 . - 0 ID=Physo158247;Parent=Physo158247;rank=7 scaffold_93 . exon 95015 95069 . - . ID=Physo158247.7;Parent=Physo158247;constitutive=1;ensembl_phase=2;rank=7 scaffold_93 . CDS 95146 95197 . - 0 ID=Physo158247;Parent=Physo158247;rank=6 scaffold_93 . exon 95146 95197 . - . ID=Physo158247.6;Parent=Physo158247;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_93 . CDS 95278 95330 . - 0 ID=Physo158247;Parent=Physo158247;rank=5 scaffold_93 . exon 95278 95330 . - . ID=Physo158247.5;Parent=Physo158247;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_93 . CDS 95403 95438 . - 0 ID=Physo158247;Parent=Physo158247;rank=4 scaffold_93 . exon 95403 95438 . - . ID=Physo158247.4;Parent=Physo158247;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_93 . CDS 95520 95613 . - 0 ID=Physo158247;Parent=Physo158247;rank=3 scaffold_93 . exon 95520 95613 . - . ID=Physo158247.3;Parent=Physo158247;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_93 . CDS 95690 95747 . - 0 ID=Physo158247;Parent=Physo158247;rank=2 scaffold_93 . exon 95690 95747 . - . ID=Physo158247.2;Parent=Physo158247;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_93 . CDS 95816 96001 . - 0 ID=Physo158247;Parent=Physo158247;rank=1 scaffold_93 . exon 95816 96001 . - . ID=Physo158247.1;Parent=Physo158247;constitutive=1;rank=1 scaffold_93 . biological_region 99421 99423 0.999 + . logic_name=eponine scaffold_93 . biological_region 108249 108252 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 101671 103257 . - . ID=Physo141032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930015;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 101671 103257 . - . ID=Physo141032;Parent=Physo141032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 101671 103257 . - 0 ID=Physo141032;Parent=Physo141032;rank=1 scaffold_93 . exon 101671 103257 . - . ID=Physo141032.1;Parent=Physo141032;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 104566 106644 . + . ID=Physo141033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930016;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 104566 106644 . + . ID=Physo141033;Parent=Physo141033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 104566 105605 . + 0 ID=Physo141033;Parent=Physo141033;rank=1 scaffold_93 . exon 104566 105605 . + . ID=Physo141033.1;Parent=Physo141033;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . CDS 105681 105804 . + 0 ID=Physo141033;Parent=Physo141033;rank=2 scaffold_93 . exon 105681 105804 . + . ID=Physo141033.2;Parent=Physo141033;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 105877 106644 . + 0 ID=Physo141033;Parent=Physo141033;rank=3 scaffold_93 . exon 105877 106644 . + . ID=Physo141033.3;Parent=Physo141033;constitutive=1;rank=3 scaffold_93 . repeat_region 109304 109311 . ? . description=dust scaffold_93 . repeat_region 111948 111991 . ? . description=trf scaffold_93 ensembl protein_coding_gene 108658 112507 . - . ID=Physo158249;biotype=protein_coding;external_name=C_scaffold_93000004;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 108658 112507 . - . ID=Physo158249;Parent=Physo158249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 108658 108921 . - 0 ID=Physo158249;Parent=Physo158249;rank=11 scaffold_93 . exon 108658 108921 . - . ID=Physo158249.11;Parent=Physo158249;constitutive=1;rank=11 scaffold_93 . CDS 109084 109211 . - 0 ID=Physo158249;Parent=Physo158249;rank=10 scaffold_93 . exon 109084 109211 . - . ID=Physo158249.10;Parent=Physo158249;constitutive=1;ensembl_phase=1;rank=10 scaffold_93 . CDS 109435 109597 . - 0 ID=Physo158249;Parent=Physo158249;rank=9 scaffold_93 . exon 109435 109597 . - . ID=Physo158249.9;Parent=Physo158249;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_93 . CDS 109668 110388 . - 0 ID=Physo158249;Parent=Physo158249;rank=8 scaffold_93 . exon 109668 110388 . - . ID=Physo158249.8;Parent=Physo158249;constitutive=1;ensembl_phase=2;rank=8 scaffold_93 . CDS 110546 110675 . - 0 ID=Physo158249;Parent=Physo158249;rank=7 scaffold_93 . exon 110546 110675 . - . ID=Physo158249.7;Parent=Physo158249;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_93 . CDS 110757 110973 . - 0 ID=Physo158249;Parent=Physo158249;rank=6 scaffold_93 . exon 110757 110973 . - . ID=Physo158249.6;Parent=Physo158249;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_93 . CDS 111133 111257 . - 0 ID=Physo158249;Parent=Physo158249;rank=5 scaffold_93 . exon 111133 111257 . - . ID=Physo158249.5;Parent=Physo158249;constitutive=1;ensembl_phase=1;rank=5 scaffold_93 . CDS 111592 111678 . - 0 ID=Physo158249;Parent=Physo158249;rank=4 scaffold_93 . exon 111592 111678 . - . ID=Physo158249.4;Parent=Physo158249;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_93 . CDS 111769 111941 . - 0 ID=Physo158249;Parent=Physo158249;rank=3 scaffold_93 . exon 111769 111941 . - . ID=Physo158249.3;Parent=Physo158249;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_93 . CDS 112024 112058 . - 0 ID=Physo158249;Parent=Physo158249;rank=2 scaffold_93 . exon 112024 112058 . - . ID=Physo158249.2;Parent=Physo158249;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_93 . CDS 112148 112507 . - 0 ID=Physo158249;Parent=Physo158249;rank=1 scaffold_93 . exon 112148 112507 . - . ID=Physo158249.1;Parent=Physo158249;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 112741 114104 . + . ID=Physo158251;biotype=protein_coding;external_name=C_scaffold_93000006;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 112741 114104 . + . ID=Physo158251;Parent=Physo158251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 112741 113133 . + 0 ID=Physo158251;Parent=Physo158251;rank=1 scaffold_93 . exon 112741 113133 . + . ID=Physo158251.1;Parent=Physo158251;constitutive=1;rank=1 scaffold_93 . CDS 113218 113301 . + 0 ID=Physo158251;Parent=Physo158251;rank=2 scaffold_93 . exon 113218 113301 . + . ID=Physo158251.2;Parent=Physo158251;constitutive=1;rank=2 scaffold_93 . CDS 113365 113452 . + 0 ID=Physo158251;Parent=Physo158251;rank=3 scaffold_93 . exon 113365 113452 . + . ID=Physo158251.3;Parent=Physo158251;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_93 . CDS 113536 113732 . + 0 ID=Physo158251;Parent=Physo158251;rank=4 scaffold_93 . exon 113536 113732 . + . ID=Physo158251.4;Parent=Physo158251;constitutive=1;ensembl_phase=1;rank=4 scaffold_93 . CDS 113811 113896 . + 0 ID=Physo158251;Parent=Physo158251;rank=5 scaffold_93 . exon 113811 113896 . + . ID=Physo158251.5;Parent=Physo158251;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_93 . CDS 113972 114104 . + 0 ID=Physo158251;Parent=Physo158251;rank=6 scaffold_93 . exon 113972 114104 . + . ID=Physo158251.6;Parent=Physo158251;constitutive=1;ensembl_phase=2;rank=6 scaffold_93 ensembl protein_coding_gene 114315 117896 . + . ID=Physo158253;biotype=protein_coding;external_name=C_scaffold_93000008;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 114315 117896 . + . ID=Physo158253;Parent=Physo158253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 114315 114803 . + 0 ID=Physo158253;Parent=Physo158253;rank=1 scaffold_93 . exon 114315 114803 . + . ID=Physo158253.1;Parent=Physo158253;constitutive=1;rank=1 scaffold_93 . CDS 114879 115761 . + 0 ID=Physo158253;Parent=Physo158253;rank=2 scaffold_93 . exon 114879 115761 . + . ID=Physo158253.2;Parent=Physo158253;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_93 . CDS 116191 117011 . + 0 ID=Physo158253;Parent=Physo158253;rank=3 scaffold_93 . exon 116191 117011 . + . ID=Physo158253.3;Parent=Physo158253;constitutive=1;ensembl_phase=1;rank=3 scaffold_93 . CDS 117275 117517 . + 0 ID=Physo158253;Parent=Physo158253;rank=4 scaffold_93 . exon 117275 117517 . + . ID=Physo158253.4;Parent=Physo158253;constitutive=1;rank=4 scaffold_93 . CDS 117582 117767 . + 0 ID=Physo158253;Parent=Physo158253;rank=5 scaffold_93 . exon 117582 117767 . + . ID=Physo158253.5;Parent=Physo158253;constitutive=1;rank=5 scaffold_93 . CDS 117831 117896 . + 0 ID=Physo158253;Parent=Physo158253;rank=6 scaffold_93 . exon 117831 117896 . + . ID=Physo158253.6;Parent=Physo158253;constitutive=1;rank=6 scaffold_93 . biological_region 121655 121658 0.999 + . logic_name=eponine scaffold_93 . biological_region 121733 121733 0.999 + . logic_name=eponine scaffold_93 . biological_region 124066 124067 0.999 - . logic_name=eponine scaffold_93 . biological_region 124986 124987 0.999 + . logic_name=eponine scaffold_93 . biological_region 125437 125437 0.999 + . logic_name=eponine scaffold_93 . biological_region 125474 125475 0.999 + . logic_name=eponine scaffold_93 . biological_region 125682 125684 0.999 + . logic_name=eponine scaffold_93 . biological_region 127133 127137 0.999 - . logic_name=eponine scaffold_93 . biological_region 127155 127158 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 121631 124298 . + . ID=Physo141038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930021;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 121631 124298 . + . ID=Physo141038;Parent=Physo141038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 121631 121739 . + 0 ID=Physo141038;Parent=Physo141038;rank=1 scaffold_93 . exon 121631 121739 . + . ID=Physo141038.1;Parent=Physo141038;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . CDS 121845 121943 . + 0 ID=Physo141038;Parent=Physo141038;rank=2 scaffold_93 . exon 121845 121943 . + . ID=Physo141038.2;Parent=Physo141038;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 122026 124298 . + 0 ID=Physo141038;Parent=Physo141038;rank=3 scaffold_93 . exon 122026 124298 . + . ID=Physo141038.3;Parent=Physo141038;constitutive=1;ensembl_phase=1;rank=3 scaffold_93 ensembl protein_coding_gene 126521 127480 . - . ID=Physo141041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930024;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 126521 127480 . - . ID=Physo141041;Parent=Physo141041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 126521 126637 . - 0 ID=Physo141041;Parent=Physo141041;rank=2 scaffold_93 . exon 126521 126637 . - . ID=Physo141041.2;Parent=Physo141041;constitutive=1;rank=2 scaffold_93 . CDS 126719 127480 . - 0 ID=Physo141041;Parent=Physo141041;rank=1 scaffold_93 . exon 126719 127480 . - . ID=Physo141041.1;Parent=Physo141041;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 120401 121503 . - . ID=Physo158254;biotype=protein_coding;external_name=C_scaffold_93000009;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 120401 121503 . - . ID=Physo158254;Parent=Physo158254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 120401 120408 . - 0 ID=Physo158254;Parent=Physo158254;rank=4 scaffold_93 . exon 120401 120408 . - . ID=Physo158254.4;Parent=Physo158254;constitutive=1;ensembl_phase=1;rank=4 scaffold_93 . CDS 120489 120733 . - 0 ID=Physo158254;Parent=Physo158254;rank=3 scaffold_93 . exon 120489 120733 . - . ID=Physo158254.3;Parent=Physo158254;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_93 . CDS 120758 121383 . - 0 ID=Physo158254;Parent=Physo158254;rank=2 scaffold_93 . exon 120758 121383 . - . ID=Physo158254.2;Parent=Physo158254;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_93 . CDS 121405 121503 . - 0 ID=Physo158254;Parent=Physo158254;rank=1 scaffold_93 . exon 121405 121503 . - . ID=Physo158254.1;Parent=Physo158254;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 124699 125121 . - . ID=Physo158256;biotype=protein_coding;external_name=C_scaffold_93000011;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 124699 125121 . - . ID=Physo158256;Parent=Physo158256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 124699 125121 . - 0 ID=Physo158256;Parent=Physo158256;rank=1 scaffold_93 . exon 124699 125121 . - . ID=Physo158256.1;Parent=Physo158256;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 125587 126006 . + . ID=Physo158257;biotype=protein_coding;external_name=C_scaffold_93000012;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 125587 126006 . + . ID=Physo158257;Parent=Physo158257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 125587 126006 . + 0 ID=Physo158257;Parent=Physo158257;rank=1 scaffold_93 . exon 125587 126006 . + . ID=Physo158257.1;Parent=Physo158257;constitutive=1;rank=1 scaffold_93 . repeat_region 128715 128739 . ? . description=trf scaffold_93 . repeat_region 134153 134166 . ? . description=dust scaffold_93 ensembl protein_coding_gene 129121 132066 . + . ID=Physo109348;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_930003;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 129121 132066 . + . ID=Physo109348;Parent=Physo109348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 129121 132066 . + 0 ID=Physo109348;Parent=Physo109348;rank=1 scaffold_93 . exon 129121 132066 . + . ID=Physo109348.1;Parent=Physo109348;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 132290 133284 . + . ID=Physo141043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930026;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 132290 133284 . + . ID=Physo141043;Parent=Physo141043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 132290 133157 . + 0 ID=Physo141043;Parent=Physo141043;rank=1 scaffold_93 . exon 132290 133157 . + . ID=Physo141043.1;Parent=Physo141043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . CDS 133250 133284 . + 0 ID=Physo141043;Parent=Physo141043;rank=2 scaffold_93 . exon 133250 133284 . + . ID=Physo141043.2;Parent=Physo141043;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . biological_region 141783 141783 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 140686 143015 . - . ID=Physo141044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930027;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 140686 143015 . - . ID=Physo141044;Parent=Physo141044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 140686 142722 . - 0 ID=Physo141044;Parent=Physo141044;rank=2 scaffold_93 . exon 140686 142722 . - . ID=Physo141044.2;Parent=Physo141044;constitutive=1;rank=2 scaffold_93 . CDS 142803 143015 . - 0 ID=Physo141044;Parent=Physo141044;rank=1 scaffold_93 . exon 142803 143015 . - . ID=Physo141044.1;Parent=Physo141044;constitutive=1;rank=1 scaffold_93 . repeat_region 148139 148161 . ? . description=dust scaffold_93 . repeat_region 149984 149994 . ? . description=dust scaffold_93 . repeat_region 150074 150083 . ? . description=dust scaffold_93 ensembl protein_coding_gene 152218 152721 . + . ID=Physo141045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930028;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 152218 152721 . + . ID=Physo141045;Parent=Physo141045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 152218 152721 . + 0 ID=Physo141045;Parent=Physo141045;rank=1 scaffold_93 . exon 152218 152721 . + . ID=Physo141045.1;Parent=Physo141045;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 153466 153903 . - . ID=Physo141046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930029;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 153466 153903 . - . ID=Physo141046;Parent=Physo141046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 153466 153903 . - 0 ID=Physo141046;Parent=Physo141046;rank=1 scaffold_93 . exon 153466 153903 . - . ID=Physo141046.1;Parent=Physo141046;constitutive=1;rank=1 scaffold_93 . biological_region 158640 158640 0.999 - . logic_name=eponine scaffold_93 . repeat_region 158936 158978 . ? . description=trf scaffold_93 . repeat_region 163626 163682 . ? . description=trf scaffold_93 . repeat_region 166843 166888 . ? . description=trf scaffold_93 . biological_region 166965 166970 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 159731 160941 . - . ID=Physo141047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930030;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 159731 160941 . - . ID=Physo141047;Parent=Physo141047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 159731 159954 . - 0 ID=Physo141047;Parent=Physo141047;rank=4 scaffold_93 . exon 159731 159954 . - . ID=Physo141047.4;Parent=Physo141047;constitutive=1;ensembl_phase=1;rank=4 scaffold_93 . CDS 160015 160356 . - 0 ID=Physo141047;Parent=Physo141047;rank=3 scaffold_93 . exon 160015 160356 . - . ID=Physo141047.3;Parent=Physo141047;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_93 . CDS 160399 160693 . - 0 ID=Physo141047;Parent=Physo141047;rank=2 scaffold_93 . exon 160399 160693 . - . ID=Physo141047.2;Parent=Physo141047;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_93 . CDS 160885 160941 . - 0 ID=Physo141047;Parent=Physo141047;rank=1 scaffold_93 . exon 160885 160941 . - . ID=Physo141047.1;Parent=Physo141047;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 165717 170737 . + . ID=Physo141048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930031;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 165717 170737 . + . ID=Physo141048;Parent=Physo141048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 165717 166225 . + 0 ID=Physo141048;Parent=Physo141048;rank=1 scaffold_93 . exon 165717 166225 . + . ID=Physo141048.1;Parent=Physo141048;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . CDS 166423 166813 . + 0 ID=Physo141048;Parent=Physo141048;rank=2 scaffold_93 . exon 166423 166813 . + . ID=Physo141048.2;Parent=Physo141048;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 166904 167246 . + 0 ID=Physo141048;Parent=Physo141048;rank=3 scaffold_93 . exon 166904 167246 . + . ID=Physo141048.3;Parent=Physo141048;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_93 . CDS 167726 169063 . + 0 ID=Physo141048;Parent=Physo141048;rank=4 scaffold_93 . CDS 169282 169438 . + 0 ID=Physo141048;Parent=Physo141048;rank=5 scaffold_93 . CDS 169607 169776 . + 0 ID=Physo141048;Parent=Physo141048;rank=6 scaffold_93 . CDS 169797 170737 . + 0 ID=Physo141048;Parent=Physo141048;rank=7 scaffold_93 . repeat_region 176322 176381 . ? . description=dust scaffold_93 ensembl protein_coding_gene 174477 175907 . - . ID=Physo109349;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_930004;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 174477 175907 . - . ID=Physo109349;Parent=Physo109349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 174477 175907 . - 0 ID=Physo109349;Parent=Physo109349;rank=1 scaffold_93 . exon 174477 175907 . - . ID=Physo109349.1;Parent=Physo109349;constitutive=1;rank=1 scaffold_93 . exon 167726 169063 . + . ID=Physo141048.4;Parent=Physo141048;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_93 . exon 169282 169438 . + . ID=Physo141048.5;Parent=Physo141048;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_93 . exon 169607 169776 . + . ID=Physo141048.6;Parent=Physo141048;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_93 . exon 169797 170737 . + . ID=Physo141048.7;Parent=Physo141048;constitutive=1;ensembl_phase=1;rank=7 scaffold_93 ensembl protein_coding_gene 172101 173465 . + . ID=Physo141049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930032;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 172101 173465 . + . ID=Physo141049;Parent=Physo141049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 172101 173465 . + 0 ID=Physo141049;Parent=Physo141049;rank=1 scaffold_93 . exon 172101 173465 . + . ID=Physo141049.1;Parent=Physo141049;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 173883 174305 . + . ID=Physo141050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930033;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 173883 174305 . + . ID=Physo141050;Parent=Physo141050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 173883 174305 . + 0 ID=Physo141050;Parent=Physo141050;rank=1 scaffold_93 . exon 173883 174305 . + . ID=Physo141050.1;Parent=Physo141050;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 176078 177769 . + . ID=Physo141052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930035;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 176078 177769 . + . ID=Physo141052;Parent=Physo141052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 176078 177769 . + 0 ID=Physo141052;Parent=Physo141052;rank=1 scaffold_93 . exon 176078 177769 . + . ID=Physo141052.1;Parent=Physo141052;constitutive=1;rank=1 scaffold_93 . biological_region 178509 178510 0.999 - . logic_name=eponine scaffold_93 . biological_region 178782 178785 0.999 - . logic_name=eponine scaffold_93 . biological_region 178797 178800 0.999 - . logic_name=eponine scaffold_93 . biological_region 178846 178849 0.999 - . logic_name=eponine scaffold_93 . biological_region 179013 179017 0.999 + . logic_name=eponine scaffold_93 . repeat_region 181038 181093 . ? . description=trf scaffold_93 . biological_region 184028 184029 0.999 - . logic_name=eponine scaffold_93 . repeat_region 184125 184198 . ? . description=trf scaffold_93 . biological_region 186142 186142 0.999 + . logic_name=eponine scaffold_93 . biological_region 186227 186231 0.999 + . logic_name=eponine scaffold_93 . biological_region 186508 186511 0.999 - . logic_name=eponine scaffold_93 . biological_region 186516 186519 0.999 + . logic_name=eponine scaffold_93 . biological_region 186542 186546 0.999 - . logic_name=eponine scaffold_93 ensembl protein_coding_gene 185738 187243 . - . ID=Physo109350;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_930005;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 185738 187243 . - . ID=Physo109350;Parent=Physo109350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 185738 187243 . - . ID=Physo109350.1;Parent=Physo109350;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_93 . CDS 185829 187217 . - 0 ID=Physo109350;Parent=Physo109350;rank=1 scaffold_93 ensembl protein_coding_gene 178314 179169 . - . ID=Physo121566;biotype=protein_coding;external_name=estExt_Genewise1.C_930051;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 178314 179169 . - . ID=Physo121566;Parent=Physo121566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 178314 179169 . - . ID=Physo121566.1;Parent=Physo121566;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_93 . CDS 178513 179067 . - 0 ID=Physo121566;Parent=Physo121566;rank=1 scaffold_93 ensembl protein_coding_gene 181015 181413 . + . ID=Physo141054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930037;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 181015 181413 . + . ID=Physo141054;Parent=Physo141054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 181015 181413 . + 0 ID=Physo141054;Parent=Physo141054;rank=1 scaffold_93 . exon 181015 181413 . + . ID=Physo141054.1;Parent=Physo141054;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 183857 185176 . - . ID=Physo141055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930038;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 183857 185176 . - . ID=Physo141055;Parent=Physo141055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 183857 185176 . - 0 ID=Physo141055;Parent=Physo141055;rank=1 scaffold_93 . exon 183857 185176 . - . ID=Physo141055.1;Parent=Physo141055;constitutive=1;rank=1 scaffold_93 . repeat_region 187949 187977 . ? . description=dust scaffold_93 . repeat_region 190934 190946 . ? . description=dust scaffold_93 ensembl protein_coding_gene 187786 190017 . + . ID=Physo141057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930040;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 187786 190017 . + . ID=Physo141057;Parent=Physo141057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 187786 188370 . + 0 ID=Physo141057;Parent=Physo141057;rank=1 scaffold_93 . exon 187786 188370 . + . ID=Physo141057.1;Parent=Physo141057;constitutive=1;rank=1 scaffold_93 . CDS 188447 188599 . + 0 ID=Physo141057;Parent=Physo141057;rank=2 scaffold_93 . exon 188447 188599 . + . ID=Physo141057.2;Parent=Physo141057;constitutive=1;rank=2 scaffold_93 . CDS 188678 189550 . + 0 ID=Physo141057;Parent=Physo141057;rank=3 scaffold_93 . exon 188678 189550 . + . ID=Physo141057.3;Parent=Physo141057;constitutive=1;rank=3 scaffold_93 . CDS 189772 190017 . + 0 ID=Physo141057;Parent=Physo141057;rank=4 scaffold_93 . exon 189772 190017 . + . ID=Physo141057.4;Parent=Physo141057;constitutive=1;rank=4 scaffold_93 ensembl protein_coding_gene 193018 194063 . + . ID=Physo141059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930042;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 193018 194063 . + . ID=Physo141059;Parent=Physo141059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 193018 193156 . + 0 ID=Physo141059;Parent=Physo141059;rank=1 scaffold_93 . exon 193018 193156 . + . ID=Physo141059.1;Parent=Physo141059;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . CDS 193229 194020 . + 0 ID=Physo141059;Parent=Physo141059;rank=2 scaffold_93 . exon 193229 194020 . + . ID=Physo141059.2;Parent=Physo141059;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 194053 194063 . + 0 ID=Physo141059;Parent=Physo141059;rank=3 scaffold_93 . exon 194053 194063 . + . ID=Physo141059.3;Parent=Physo141059;constitutive=1;ensembl_phase=1;rank=3 scaffold_93 ensembl protein_coding_gene 191253 192785 . - . ID=Physo158259;biotype=protein_coding;external_name=C_scaffold_93000014;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 191253 192785 . - . ID=Physo158259;Parent=Physo158259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 191253 191264 . - 0 ID=Physo158259;Parent=Physo158259;rank=9 scaffold_93 . exon 191253 191264 . - . ID=Physo158259.9;Parent=Physo158259;constitutive=1;rank=9 scaffold_93 . CDS 191318 191341 . - 0 ID=Physo158259;Parent=Physo158259;rank=8 scaffold_93 . exon 191318 191341 . - . ID=Physo158259.8;Parent=Physo158259;constitutive=1;rank=8 scaffold_93 . CDS 191417 191602 . - 0 ID=Physo158259;Parent=Physo158259;rank=7 scaffold_93 . exon 191417 191602 . - . ID=Physo158259.7;Parent=Physo158259;constitutive=1;rank=7 scaffold_93 . CDS 191681 191705 . - 0 ID=Physo158259;Parent=Physo158259;rank=6 scaffold_93 . exon 191681 191705 . - . ID=Physo158259.6;Parent=Physo158259;constitutive=1;ensembl_phase=2;rank=6 scaffold_93 . CDS 191772 191857 . - 0 ID=Physo158259;Parent=Physo158259;rank=5 scaffold_93 . exon 191772 191857 . - . ID=Physo158259.5;Parent=Physo158259;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_93 . CDS 191922 192046 . - 0 ID=Physo158259;Parent=Physo158259;rank=4 scaffold_93 . exon 191922 192046 . - . ID=Physo158259.4;Parent=Physo158259;constitutive=1;ensembl_phase=1;rank=4 scaffold_93 . CDS 192143 192296 . - 0 ID=Physo158259;Parent=Physo158259;rank=3 scaffold_93 . exon 192143 192296 . - . ID=Physo158259.3;Parent=Physo158259;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_93 . CDS 192373 192525 . - 0 ID=Physo158259;Parent=Physo158259;rank=2 scaffold_93 . exon 192373 192525 . - . ID=Physo158259.2;Parent=Physo158259;constitutive=1;rank=2 scaffold_93 . CDS 192612 192785 . - 0 ID=Physo158259;Parent=Physo158259;rank=1 scaffold_93 . exon 192612 192785 . - . ID=Physo158259.1;Parent=Physo158259;constitutive=1;rank=1 scaffold_93 . repeat_region 203374 203413 . ? . description=trf scaffold_93 . repeat_region 203377 203421 . ? . description=trf scaffold_93 . repeat_region 205716 205950 . ? . description=trf scaffold_93 . repeat_region 205766 206014 . ? . description=trf scaffold_93 ensembl protein_coding_gene 198259 199551 . - . ID=Physo141060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930043;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 198259 199551 . - . ID=Physo141060;Parent=Physo141060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 198259 199551 . - 0 ID=Physo141060;Parent=Physo141060;rank=1 scaffold_93 . exon 198259 199551 . - . ID=Physo141060.1;Parent=Physo141060;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 200023 201270 . + . ID=Physo141061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930044;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 200023 201270 . + . ID=Physo141061;Parent=Physo141061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 200023 201270 . + 0 ID=Physo141061;Parent=Physo141061;rank=1 scaffold_93 . exon 200023 201270 . + . ID=Physo141061.1;Parent=Physo141061;constitutive=1;rank=1 scaffold_93 . biological_region 207120 207123 0.999 + . logic_name=eponine scaffold_93 . repeat_region 207587 207594 . ? . description=dust scaffold_93 . repeat_region 213177 213193 . ? . description=dust scaffold_93 . repeat_region 213429 213443 . ? . description=dust scaffold_93 . repeat_region 213780 213793 . ? . description=dust scaffold_93 . repeat_region 218977 219042 . ? . description=trf scaffold_93 . repeat_region 223176 224226 . + . description=GypsyPi-1c_I-int scaffold_93 ensembl protein_coding_gene 216894 217160 . + . ID=Physo121578;biotype=protein_coding;external_name=estExt_Genewise1.C_930063;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 216894 217160 . + . ID=Physo121578;Parent=Physo121578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 216894 217160 . + . ID=Physo121578.1;Parent=Physo121578;constitutive=1;ensembl_phase=-1;rank=1 scaffold_93 . CDS 216939 217160 . + 0 ID=Physo121578;Parent=Physo121578;rank=1 scaffold_93 ensembl protein_coding_gene 219194 220026 . + . ID=Physo141062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930045;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 219194 220026 . + . ID=Physo141062;Parent=Physo141062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 219194 219503 . + 0 ID=Physo141062;Parent=Physo141062;rank=1 scaffold_93 . exon 219194 219503 . + . ID=Physo141062.1;Parent=Physo141062;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . CDS 219557 219687 . + 0 ID=Physo141062;Parent=Physo141062;rank=2 scaffold_93 . exon 219557 219687 . + . ID=Physo141062.2;Parent=Physo141062;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 219715 220026 . + 0 ID=Physo141062;Parent=Physo141062;rank=3 scaffold_93 . exon 219715 220026 . + . ID=Physo141062.3;Parent=Physo141062;constitutive=1;rank=3 scaffold_93 ensembl protein_coding_gene 222500 225975 . + . ID=Physo141063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930046;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 222500 225975 . + . ID=Physo141063;Parent=Physo141063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 222500 222706 . + 0 ID=Physo141063;Parent=Physo141063;rank=1 scaffold_93 . exon 222500 222706 . + . ID=Physo141063.1;Parent=Physo141063;constitutive=1;rank=1 scaffold_93 . CDS 222820 223301 . + 0 ID=Physo141063;Parent=Physo141063;rank=2 scaffold_93 . exon 222820 223301 . + . ID=Physo141063.2;Parent=Physo141063;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_93 . CDS 223376 224527 . + 0 ID=Physo141063;Parent=Physo141063;rank=3 scaffold_93 . exon 223376 224527 . + . ID=Physo141063.3;Parent=Physo141063;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_93 . CDS 225264 225975 . + 0 ID=Physo141063;Parent=Physo141063;rank=4 scaffold_93 . exon 225264 225975 . + . ID=Physo141063.4;Parent=Physo141063;constitutive=1;ensembl_phase=2;rank=4 scaffold_93 . biological_region 228660 228662 0.999 + . logic_name=eponine scaffold_93 . biological_region 229708 229715 0.999 - . logic_name=eponine scaffold_93 . biological_region 229783 229787 0.999 - . logic_name=eponine scaffold_93 . biological_region 229843 229850 0.999 - . logic_name=eponine scaffold_93 . biological_region 229865 229865 0.999 - . logic_name=eponine scaffold_93 . biological_region 230464 230467 0.999 - . logic_name=eponine scaffold_93 . biological_region 232979 232981 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 226898 230483 . + . ID=Physo141064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930047;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 226898 230483 . + . ID=Physo141064;Parent=Physo141064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 226898 226954 . + 0 ID=Physo141064;Parent=Physo141064;rank=1 scaffold_93 . exon 226898 226954 . + . ID=Physo141064.1;Parent=Physo141064;constitutive=1;rank=1 scaffold_93 . CDS 227087 228055 . + 0 ID=Physo141064;Parent=Physo141064;rank=2 scaffold_93 . exon 227087 228055 . + . ID=Physo141064.2;Parent=Physo141064;constitutive=1;rank=2 scaffold_93 . CDS 228077 228492 . + 0 ID=Physo141064;Parent=Physo141064;rank=3 scaffold_93 . exon 228077 228492 . + . ID=Physo141064.3;Parent=Physo141064;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_93 . CDS 229458 229918 . + 0 ID=Physo141064;Parent=Physo141064;rank=4 scaffold_93 . exon 229458 229918 . + . ID=Physo141064.4;Parent=Physo141064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_93 . CDS 229966 230483 . + 0 ID=Physo141064;Parent=Physo141064;rank=5 scaffold_93 . exon 229966 230483 . + . ID=Physo141064.5;Parent=Physo141064;constitutive=1;ensembl_phase=1;rank=5 scaffold_93 ensembl protein_coding_gene 230766 236126 . - . ID=Physo141065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930048;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 230766 236126 . - . ID=Physo141065;Parent=Physo141065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 230766 231050 . - 0 ID=Physo141065;Parent=Physo141065;rank=8 scaffold_93 . exon 230766 231050 . - . ID=Physo141065.8;Parent=Physo141065;constitutive=1;rank=8 scaffold_93 . CDS 231118 231518 . - 0 ID=Physo141065;Parent=Physo141065;rank=7 scaffold_93 . exon 231118 231518 . - . ID=Physo141065.7;Parent=Physo141065;constitutive=1;ensembl_phase=1;rank=7 scaffold_93 . CDS 231762 232335 . - 0 ID=Physo141065;Parent=Physo141065;rank=6 scaffold_93 . exon 231762 232335 . - . ID=Physo141065.6;Parent=Physo141065;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_93 . CDS 232356 232383 . - 0 ID=Physo141065;Parent=Physo141065;rank=5 scaffold_93 . exon 232356 232383 . - . ID=Physo141065.5;Parent=Physo141065;constitutive=1;ensembl_phase=2;rank=5 scaffold_93 . CDS 232594 233312 . - 0 ID=Physo141065;Parent=Physo141065;rank=4 scaffold_93 . exon 232594 233312 . - . ID=Physo141065.4;Parent=Physo141065;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_93 . CDS 233346 233873 . - 0 ID=Physo141065;Parent=Physo141065;rank=3 scaffold_93 . exon 233346 233873 . - . ID=Physo141065.3;Parent=Physo141065;constitutive=1;rank=3 scaffold_93 . CDS 233921 235054 . - 0 ID=Physo141065;Parent=Physo141065;rank=2 scaffold_93 . exon 233921 235054 . - . ID=Physo141065.2;Parent=Physo141065;constitutive=1;rank=2 scaffold_93 . CDS 235203 236126 . - 0 ID=Physo141065;Parent=Physo141065;rank=1 scaffold_93 . exon 235203 236126 . - . ID=Physo141065.1;Parent=Physo141065;constitutive=1;rank=1 scaffold_93 . repeat_region 236624 236787 . - . description=Polinton-1_PI scaffold_93 . repeat_region 239349 239356 . ? . description=dust scaffold_93 . repeat_region 240852 241081 . - . description=Polinton-1_PI scaffold_93 . repeat_region 244024 244073 . ? . description=dust scaffold_93 . repeat_region 244402 244565 . - . description=Polinton-1_PI scaffold_93 . repeat_region 244932 244981 . ? . description=dust scaffold_93 . repeat_region 245647 245719 . - . description=GypsyPi-1c_I-int scaffold_93 . repeat_region 246030 248951 . - . description=GypsyPi-1c_I-int scaffold_93 ensembl protein_coding_gene 236885 238541 . - . ID=Physo141066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930049;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 236885 238541 . - . ID=Physo141066;Parent=Physo141066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 236885 238322 . - 0 ID=Physo141066;Parent=Physo141066;rank=2 scaffold_93 . exon 236885 238322 . - . ID=Physo141066.2;Parent=Physo141066;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 238513 238541 . - 0 ID=Physo141066;Parent=Physo141066;rank=1 scaffold_93 . exon 238513 238541 . - . ID=Physo141066.1;Parent=Physo141066;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 ensembl protein_coding_gene 240232 241029 . - . ID=Physo141067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930050;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 240232 241029 . - . ID=Physo141067;Parent=Physo141067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 240232 240253 . - 0 ID=Physo141067;Parent=Physo141067;rank=4 scaffold_93 . exon 240232 240253 . - . ID=Physo141067.4;Parent=Physo141067;constitutive=1;ensembl_phase=2;rank=4 scaffold_93 . CDS 240307 240347 . - 0 ID=Physo141067;Parent=Physo141067;rank=3 scaffold_93 . exon 240307 240347 . - . ID=Physo141067.3;Parent=Physo141067;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_93 . CDS 240540 240923 . - 0 ID=Physo141067;Parent=Physo141067;rank=2 scaffold_93 . exon 240540 240923 . - . ID=Physo141067.2;Parent=Physo141067;constitutive=1;rank=2 scaffold_93 . CDS 240980 240991 . - 0 ID=Physo141067;Parent=Physo141067;rank=1 scaffold_93 . exon 240980 241029 . - . ID=Physo141067.1;Parent=Physo141067;constitutive=1;ensembl_phase=-1;rank=1 scaffold_93 ensembl protein_coding_gene 242090 242578 . + . ID=Physo141068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930051;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 242090 242578 . + . ID=Physo141068;Parent=Physo141068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 242090 242578 . + 0 ID=Physo141068;Parent=Physo141068;rank=1 scaffold_93 . exon 242090 242578 . + . ID=Physo141068.1;Parent=Physo141068;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 245733 251152 . - . ID=Physo141069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930052;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 245733 251152 . - . ID=Physo141069;Parent=Physo141069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 245733 246184 . - 0 ID=Physo141069;Parent=Physo141069;rank=4 scaffold_93 . exon 245733 246184 . - . ID=Physo141069.4;Parent=Physo141069;constitutive=1;ensembl_phase=1;rank=4 scaffold_93 . CDS 246409 247698 . - 0 ID=Physo141069;Parent=Physo141069;rank=3 scaffold_93 . CDS 247928 250114 . - 0 ID=Physo141069;Parent=Physo141069;rank=2 scaffold_93 . CDS 250372 251152 . - 0 ID=Physo141069;Parent=Physo141069;rank=1 scaffold_93 . biological_region 246485 246486 0.999 + . logic_name=eponine scaffold_93 . biological_region 246562 246564 0.999 - . logic_name=eponine scaffold_93 . biological_region 249063 249066 0.999 + . logic_name=eponine scaffold_93 . biological_region 249389 249392 0.999 - . logic_name=eponine scaffold_93 . biological_region 249462 249470 0.999 - . logic_name=eponine scaffold_93 . biological_region 249520 249520 0.999 + . logic_name=eponine scaffold_93 . biological_region 249538 249539 0.999 - . logic_name=eponine scaffold_93 . biological_region 249556 249561 0.999 - . logic_name=eponine scaffold_93 . biological_region 249933 249937 0.999 + . logic_name=eponine scaffold_93 . biological_region 250438 250438 0.999 + . logic_name=eponine scaffold_93 . repeat_region 251462 251500 . ? . description=trf scaffold_93 . repeat_region 251996 252212 . ? . description=trf scaffold_93 . biological_region 253363 253364 0.999 + . logic_name=eponine scaffold_93 . biological_region 253740 253744 0.999 - . logic_name=eponine scaffold_93 . repeat_region 255761 255949 . ? . description=trf scaffold_93 . exon 246409 247698 . - . ID=Physo141069.3;Parent=Physo141069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_93 . exon 247928 250114 . - . ID=Physo141069.2;Parent=Physo141069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_93 . exon 250372 251152 . - . ID=Physo141069.1;Parent=Physo141069;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 ensembl protein_coding_gene 253815 254423 . + . ID=Physo141070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930053;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 253815 254423 . + . ID=Physo141070;Parent=Physo141070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 253815 253889 . + . ID=Physo141070.1;Parent=Physo141070;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_93 . CDS 253883 253889 . + 0 ID=Physo141070;Parent=Physo141070;rank=1 scaffold_93 . CDS 254139 254422 . + 0 ID=Physo141070;Parent=Physo141070;rank=2 scaffold_93 . exon 254139 254423 . + . ID=Physo141070.2;Parent=Physo141070;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_93 . repeat_region 258694 258701 . ? . description=dust scaffold_93 ensembl protein_coding_gene 258697 259795 . - . ID=Physo141071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930054;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 258697 259795 . - . ID=Physo141071;Parent=Physo141071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 258697 258941 . - . ID=Physo141071.2;Parent=Physo141071;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_93 . CDS 258787 258941 . - 0 ID=Physo141071;Parent=Physo141071;rank=2 scaffold_93 . CDS 259015 259795 . - 0 ID=Physo141071;Parent=Physo141071;rank=1 scaffold_93 . exon 259015 259795 . - . ID=Physo141071.1;Parent=Physo141071;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 ensembl protein_coding_gene 260058 264074 . + . ID=Physo158262;biotype=protein_coding;external_name=C_scaffold_93000017;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 260058 264074 . + . ID=Physo158262;Parent=Physo158262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 260058 260541 . + 0 ID=Physo158262;Parent=Physo158262;rank=1 scaffold_93 . exon 260058 260541 . + . ID=Physo158262.1;Parent=Physo158262;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . CDS 260569 261127 . + 0 ID=Physo158262;Parent=Physo158262;rank=2 scaffold_93 . exon 260569 261127 . + . ID=Physo158262.2;Parent=Physo158262;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_93 . CDS 261149 261362 . + 0 ID=Physo158262;Parent=Physo158262;rank=3 scaffold_93 . exon 261149 261362 . + . ID=Physo158262.3;Parent=Physo158262;constitutive=1;ensembl_phase=2;rank=3 scaffold_93 . CDS 261387 261628 . + 0 ID=Physo158262;Parent=Physo158262;rank=4 scaffold_93 . exon 261387 261628 . + . ID=Physo158262.4;Parent=Physo158262;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_93 . CDS 261796 262174 . + 0 ID=Physo158262;Parent=Physo158262;rank=5 scaffold_93 . exon 261796 262174 . + . ID=Physo158262.5;Parent=Physo158262;constitutive=1;ensembl_phase=2;rank=5 scaffold_93 . CDS 262246 262313 . + 0 ID=Physo158262;Parent=Physo158262;rank=6 scaffold_93 . exon 262246 262313 . + . ID=Physo158262.6;Parent=Physo158262;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_93 . CDS 262383 262581 . + 0 ID=Physo158262;Parent=Physo158262;rank=7 scaffold_93 . exon 262383 262581 . + . ID=Physo158262.7;Parent=Physo158262;constitutive=1;ensembl_phase=2;rank=7 scaffold_93 . CDS 262652 262764 . + 0 ID=Physo158262;Parent=Physo158262;rank=8 scaffold_93 . exon 262652 262764 . + . ID=Physo158262.8;Parent=Physo158262;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_93 . CDS 262807 262876 . + 0 ID=Physo158262;Parent=Physo158262;rank=9 scaffold_93 . exon 262807 262876 . + . ID=Physo158262.9;Parent=Physo158262;constitutive=1;ensembl_phase=2;rank=9 scaffold_93 . CDS 263114 263151 . + 0 ID=Physo158262;Parent=Physo158262;rank=10 scaffold_93 . exon 263114 263151 . + . ID=Physo158262.10;Parent=Physo158262;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_93 . CDS 263282 263518 . + 0 ID=Physo158262;Parent=Physo158262;rank=11 scaffold_93 . exon 263282 263518 . + . ID=Physo158262.11;Parent=Physo158262;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_93 . CDS 263603 263735 . + 0 ID=Physo158262;Parent=Physo158262;rank=12 scaffold_93 . exon 263603 263735 . + . ID=Physo158262.12;Parent=Physo158262;constitutive=1;ensembl_phase=2;rank=12 scaffold_93 . CDS 263757 263870 . + 0 ID=Physo158262;Parent=Physo158262;rank=13 scaffold_93 . exon 263757 263870 . + . ID=Physo158262.13;Parent=Physo158262;constitutive=1;rank=13 scaffold_93 . CDS 263946 264074 . + 0 ID=Physo158262;Parent=Physo158262;rank=14 scaffold_93 . exon 263946 264074 . + . ID=Physo158262.14;Parent=Physo158262;constitutive=1;rank=14 scaffold_93 . biological_region 266887 266890 0.999 + . logic_name=eponine scaffold_93 . biological_region 267199 267205 0.999 - . logic_name=eponine scaffold_93 . biological_region 267877 267878 0.999 + . logic_name=eponine scaffold_93 . biological_region 270653 270654 0.999 - . logic_name=eponine scaffold_93 . biological_region 271326 271332 0.999 + . logic_name=eponine scaffold_93 . biological_region 271641 271644 0.999 - . logic_name=eponine scaffold_93 . biological_region 272018 272022 0.999 - . logic_name=eponine scaffold_93 ensembl pseudogene 270282 271662 . - . ID=Physo109352;biotype=pseudogene;external_name=estExt_fgenesh1_pm.C_930007;logic_name=jgi_physo1_1 scaffold_93 ensembl pseudogene 270282 271662 . - . ID=Physo109352;Parent=Physo109352;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_93 . exon 270282 271662 . - . ID=Physo109352.1;Parent=Physo109352;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_93 ensembl protein_coding_gene 266868 268248 . + . ID=Physo121586;biotype=protein_coding;external_name=estExt_Genewise1.C_930071;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 266868 268248 . + . ID=Physo121586;Parent=Physo121586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 266868 268248 . + . ID=Physo121586.1;Parent=Physo121586;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_93 . CDS 266912 268075 . + 0 ID=Physo121586;Parent=Physo121586;rank=1 scaffold_93 ensembl protein_coding_gene 266318 266707 . - . ID=Physo141073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930056;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 266318 266707 . - . ID=Physo141073;Parent=Physo141073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 266318 266707 . - 0 ID=Physo141073;Parent=Physo141073;rank=1 scaffold_93 . exon 266318 266707 . - . ID=Physo141073.1;Parent=Physo141073;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 271875 272893 . + . ID=Physo141076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930059;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 271875 272893 . + . ID=Physo141076;Parent=Physo141076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 271875 272733 . + 0 ID=Physo141076;Parent=Physo141076;rank=1 scaffold_93 . exon 271875 272733 . + . ID=Physo141076.1;Parent=Physo141076;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_93 . CDS 272832 272893 . + 0 ID=Physo141076;Parent=Physo141076;rank=2 scaffold_93 . exon 272832 272893 . + . ID=Physo141076.2;Parent=Physo141076;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . biological_region 288989 288992 0.999 - . logic_name=eponine scaffold_93 . repeat_region 289574 289582 . ? . description=dust scaffold_93 . biological_region 294985 294986 0.999 - . logic_name=eponine scaffold_93 . biological_region 295089 295092 0.999 - . logic_name=eponine scaffold_93 ensembl protein_coding_gene 287858 288349 . - . ID=Physo141077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930060;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 287858 288349 . - . ID=Physo141077;Parent=Physo141077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 287858 288349 . - 0 ID=Physo141077;Parent=Physo141077;rank=1 scaffold_93 . exon 287858 288349 . - . ID=Physo141077.1;Parent=Physo141077;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 291160 294286 . - . ID=Physo158263;biotype=protein_coding;external_name=C_scaffold_93000018;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 291160 294286 . - . ID=Physo158263;Parent=Physo158263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 291160 291255 . - 0 ID=Physo158263;Parent=Physo158263;rank=3 scaffold_93 . exon 291160 291255 . - . ID=Physo158263.3;Parent=Physo158263;constitutive=1;rank=3 scaffold_93 . CDS 291275 291679 . - 0 ID=Physo158263;Parent=Physo158263;rank=2 scaffold_93 . exon 291275 291679 . - . ID=Physo158263.2;Parent=Physo158263;constitutive=1;rank=2 scaffold_93 . CDS 291836 294286 . - 0 ID=Physo158263;Parent=Physo158263;rank=1 scaffold_93 . exon 291836 294286 . - . ID=Physo158263.1;Parent=Physo158263;constitutive=1;rank=1 scaffold_93 ensembl protein_coding_gene 294475 295097 . + . ID=Physo158265;biotype=protein_coding;external_name=C_scaffold_93000020;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 294475 295097 . + . ID=Physo158265;Parent=Physo158265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 294475 294522 . + 0 ID=Physo158265;Parent=Physo158265;rank=1 scaffold_93 . exon 294475 294522 . + . ID=Physo158265.1;Parent=Physo158265;constitutive=1;rank=1 scaffold_93 . CDS 294574 294681 . + 0 ID=Physo158265;Parent=Physo158265;rank=2 scaffold_93 . exon 294574 294681 . + . ID=Physo158265.2;Parent=Physo158265;constitutive=1;rank=2 scaffold_93 . CDS 294756 295097 . + 0 ID=Physo158265;Parent=Physo158265;rank=3 scaffold_93 . exon 294756 295097 . + . ID=Physo158265.3;Parent=Physo158265;constitutive=1;rank=3 scaffold_93 ensembl protein_coding_gene 295566 296662 . + . ID=Physo121523;biotype=protein_coding;external_name=estExt_Genewise1.C_930008;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 295566 296662 . + . ID=Physo121523;Parent=Physo121523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 295566 295687 . + . ID=Physo121523.1;Parent=Physo121523;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_93 . CDS 295573 295687 . + 0 ID=Physo121523;Parent=Physo121523;rank=1 scaffold_93 . CDS 295763 295902 . + 0 ID=Physo121523;Parent=Physo121523;rank=2 scaffold_93 . exon 295763 295902 . + . ID=Physo121523.2;Parent=Physo121523;constitutive=1;ensembl_phase=1;rank=2 scaffold_93 . CDS 295970 296662 . + 0 ID=Physo121523;Parent=Physo121523;rank=3 scaffold_93 . exon 295970 296662 . + . ID=Physo121523.3;Parent=Physo121523;constitutive=1;rank=3 scaffold_93 ensembl protein_coding_gene 296633 297278 . + . ID=Physo121527;biotype=protein_coding;external_name=estExt_Genewise1.C_930012;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 296633 297278 . + . ID=Physo121527;Parent=Physo121527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 296633 297278 . + . ID=Physo121527.1;Parent=Physo121527;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_93 . CDS 296690 297154 . + 0 ID=Physo121527;Parent=Physo121527;rank=1 scaffold_93 ensembl protein_coding_gene 299603 300734 . + . ID=Physo141081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930064;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 299603 300734 . + . ID=Physo141081;Parent=Physo141081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 299603 299785 . + 0 ID=Physo141081;Parent=Physo141081;rank=1 scaffold_93 . exon 299603 299785 . + . ID=Physo141081.1;Parent=Physo141081;constitutive=1;rank=1 scaffold_93 . CDS 299975 300136 . + 0 ID=Physo141081;Parent=Physo141081;rank=2 scaffold_93 . exon 299975 300136 . + . ID=Physo141081.2;Parent=Physo141081;constitutive=1;rank=2 scaffold_93 . CDS 300264 300734 . + 0 ID=Physo141081;Parent=Physo141081;rank=3 scaffold_93 . exon 300264 300734 . + . ID=Physo141081.3;Parent=Physo141081;constitutive=1;rank=3 scaffold_93 ensembl protein_coding_gene 301460 306901 . + . ID=Physo141082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930065;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 301460 306901 . + . ID=Physo141082;Parent=Physo141082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 301460 306901 . + 0 ID=Physo141082;Parent=Physo141082;rank=1 scaffold_93 . exon 301460 306901 . + . ID=Physo141082.1;Parent=Physo141082;constitutive=1;rank=1 scaffold_93 . repeat_region 305258 305296 . ? . description=trf scaffold_93 . repeat_region 305258 305296 . ? . description=trf scaffold_93 . repeat_region 305959 305985 . ? . description=trf scaffold_93 . biological_region 307792 307792 0.999 + . logic_name=eponine scaffold_93 . biological_region 309269 309271 0.999 + . logic_name=eponine scaffold_93 . repeat_region 309539 309598 . ? . description=trf scaffold_93 . biological_region 310266 310268 0.999 + . logic_name=eponine scaffold_93 . biological_region 312249 312251 0.999 - . logic_name=eponine scaffold_93 . biological_region 312741 312744 0.999 + . logic_name=eponine scaffold_93 . biological_region 312784 312787 0.999 + . logic_name=eponine scaffold_93 . biological_region 312845 312849 0.999 + . logic_name=eponine scaffold_93 . biological_region 313156 313156 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 307248 307824 . - . ID=Physo141083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930066;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 307248 307824 . - . ID=Physo141083;Parent=Physo141083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 307248 307257 . - 0 ID=Physo141083;Parent=Physo141083;rank=4 scaffold_93 . exon 307248 307257 . - . ID=Physo141083.4;Parent=Physo141083;constitutive=1;ensembl_phase=2;rank=4 scaffold_93 . CDS 307300 307355 . - 0 ID=Physo141083;Parent=Physo141083;rank=3 scaffold_93 . exon 307300 307355 . - . ID=Physo141083.3;Parent=Physo141083;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_93 . CDS 307419 307509 . - 0 ID=Physo141083;Parent=Physo141083;rank=2 scaffold_93 . exon 307419 307509 . - . ID=Physo141083.2;Parent=Physo141083;constitutive=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 307577 307824 . - 0 ID=Physo141083;Parent=Physo141083;rank=1 scaffold_93 . exon 307577 307824 . - . ID=Physo141083.1;Parent=Physo141083;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 ensembl protein_coding_gene 308916 310166 . + . ID=Physo141084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930067;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 308916 310166 . + . ID=Physo141084;Parent=Physo141084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 308916 309665 . + 0 ID=Physo141084;Parent=Physo141084;rank=1 scaffold_93 . exon 308916 309665 . + . ID=Physo141084.1;Parent=Physo141084;constitutive=1;rank=1 scaffold_93 . CDS 309758 309767 . + 0 ID=Physo141084;Parent=Physo141084;rank=2 scaffold_93 . exon 309758 309767 . + . ID=Physo141084.2;Parent=Physo141084;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_93 . CDS 309832 310166 . + 0 ID=Physo141084;Parent=Physo141084;rank=3 scaffold_93 . exon 309832 310166 . + . ID=Physo141084.3;Parent=Physo141084;constitutive=1;ensembl_phase=1;rank=3 scaffold_93 ensembl protein_coding_gene 310234 312461 . - . ID=Physo141085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930068;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 310234 312461 . - . ID=Physo141085;Parent=Physo141085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . exon 310234 312003 . - . ID=Physo141085.2;Parent=Physo141085;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_93 . CDS 310281 312003 . - 0 ID=Physo141085;Parent=Physo141085;rank=2 scaffold_93 . CDS 312100 312461 . - 0 ID=Physo141085;Parent=Physo141085;rank=1 scaffold_93 . exon 312100 312461 . - . ID=Physo141085.1;Parent=Physo141085;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 ensembl protein_coding_gene 312733 313467 . + . ID=Physo158271;biotype=protein_coding;external_name=C_scaffold_93000026;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 312733 313467 . + . ID=Physo158271;Parent=Physo158271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 312733 312936 . + 0 ID=Physo158271;Parent=Physo158271;rank=1 scaffold_93 . exon 312733 312936 . + . ID=Physo158271.1;Parent=Physo158271;constitutive=1;rank=1 scaffold_93 . CDS 313018 313086 . + 0 ID=Physo158271;Parent=Physo158271;rank=2 scaffold_93 . exon 313018 313086 . + . ID=Physo158271.2;Parent=Physo158271;constitutive=1;rank=2 scaffold_93 . CDS 313157 313307 . + 0 ID=Physo158271;Parent=Physo158271;rank=3 scaffold_93 . exon 313157 313307 . + . ID=Physo158271.3;Parent=Physo158271;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_93 . CDS 313379 313467 . + 0 ID=Physo158271;Parent=Physo158271;rank=4 scaffold_93 . exon 313379 313467 . + . ID=Physo158271.4;Parent=Physo158271;constitutive=1;ensembl_phase=1;rank=4 scaffold_93 . repeat_region 323942 323950 . ? . description=dust scaffold_93 ensembl protein_coding_gene 321225 323090 . + . ID=Physo141088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930071;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 321225 323090 . + . ID=Physo141088;Parent=Physo141088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 321225 321787 . + 0 ID=Physo141088;Parent=Physo141088;rank=1 scaffold_93 . exon 321225 321787 . + . ID=Physo141088.1;Parent=Physo141088;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_93 . CDS 321932 323016 . + 0 ID=Physo141088;Parent=Physo141088;rank=2 scaffold_93 . exon 321932 323016 . + . ID=Physo141088.2;Parent=Physo141088;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_93 . CDS 323077 323090 . + 0 ID=Physo141088;Parent=Physo141088;rank=3 scaffold_93 . exon 323077 323090 . + . ID=Physo141088.3;Parent=Physo141088;constitutive=1;ensembl_phase=1;rank=3 scaffold_93 ensembl protein_coding_gene 316079 320781 . - . ID=Physo158272;biotype=protein_coding;external_name=C_scaffold_93000027;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 316079 320781 . - . ID=Physo158272;Parent=Physo158272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 316079 316212 . - 0 ID=Physo158272;Parent=Physo158272;rank=17 scaffold_93 . exon 316079 316212 . - . ID=Physo158272.17;Parent=Physo158272;constitutive=1;ensembl_phase=1;rank=17 scaffold_93 . CDS 316249 316363 . - 0 ID=Physo158272;Parent=Physo158272;rank=16 scaffold_93 . exon 316249 316363 . - . ID=Physo158272.16;Parent=Physo158272;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_93 . CDS 316441 316656 . - 0 ID=Physo158272;Parent=Physo158272;rank=15 scaffold_93 . exon 316441 316656 . - . ID=Physo158272.15;Parent=Physo158272;constitutive=1;rank=15 scaffold_93 . CDS 316902 317063 . - 0 ID=Physo158272;Parent=Physo158272;rank=14 scaffold_93 . exon 316902 317063 . - . ID=Physo158272.14;Parent=Physo158272;constitutive=1;rank=14 scaffold_93 . CDS 317205 317568 . - 0 ID=Physo158272;Parent=Physo158272;rank=13 scaffold_93 . exon 317205 317568 . - . ID=Physo158272.13;Parent=Physo158272;constitutive=1;ensembl_phase=2;rank=13 scaffold_93 . CDS 317625 317713 . - 0 ID=Physo158272;Parent=Physo158272;rank=12 scaffold_93 . exon 317625 317713 . - . ID=Physo158272.12;Parent=Physo158272;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_93 . CDS 317782 317879 . - 0 ID=Physo158272;Parent=Physo158272;rank=11 scaffold_93 . exon 317782 317879 . - . ID=Physo158272.11;Parent=Physo158272;constitutive=1;ensembl_phase=1;rank=11 scaffold_93 . CDS 318126 318298 . - 0 ID=Physo158272;Parent=Physo158272;rank=10 scaffold_93 . exon 318126 318298 . - . ID=Physo158272.10;Parent=Physo158272;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_93 . CDS 318359 318665 . - 0 ID=Physo158272;Parent=Physo158272;rank=9 scaffold_93 . exon 318359 318665 . - . ID=Physo158272.9;Parent=Physo158272;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_93 . CDS 318876 319026 . - 0 ID=Physo158272;Parent=Physo158272;rank=8 scaffold_93 . exon 318876 319026 . - . ID=Physo158272.8;Parent=Physo158272;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_93 . CDS 319051 319319 . - 0 ID=Physo158272;Parent=Physo158272;rank=7 scaffold_93 . exon 319051 319319 . - . ID=Physo158272.7;Parent=Physo158272;constitutive=1;ensembl_phase=1;rank=7 scaffold_93 . CDS 319479 319593 . - 0 ID=Physo158272;Parent=Physo158272;rank=6 scaffold_93 . exon 319479 319593 . - . ID=Physo158272.6;Parent=Physo158272;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_93 . CDS 319672 319761 . - 0 ID=Physo158272;Parent=Physo158272;rank=5 scaffold_93 . exon 319672 319761 . - . ID=Physo158272.5;Parent=Physo158272;constitutive=1;rank=5 scaffold_93 . CDS 319836 319977 . - 0 ID=Physo158272;Parent=Physo158272;rank=4 scaffold_93 . exon 319836 319977 . - . ID=Physo158272.4;Parent=Physo158272;constitutive=1;ensembl_phase=2;rank=4 scaffold_93 . CDS 320062 320168 . - 0 ID=Physo158272;Parent=Physo158272;rank=3 scaffold_93 . exon 320062 320168 . - . ID=Physo158272.3;Parent=Physo158272;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_93 . CDS 320246 320416 . - 0 ID=Physo158272;Parent=Physo158272;rank=2 scaffold_93 . exon 320246 320416 . - . ID=Physo158272.2;Parent=Physo158272;constitutive=1;rank=2 scaffold_93 . CDS 320500 320781 . - 0 ID=Physo158272;Parent=Physo158272;rank=1 scaffold_93 . exon 320500 320781 . - . ID=Physo158272.1;Parent=Physo158272;constitutive=1;rank=1 scaffold_93 . repeat_region 328685 328746 . ? . description=trf scaffold_93 . repeat_region 333519 333545 . ? . description=trf scaffold_93 . biological_region 334562 334564 0.999 + . logic_name=eponine scaffold_93 ensembl protein_coding_gene 328387 328908 . - . ID=Physo141089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_930072;logic_name=jgi_physo1_1 scaffold_93 ensembl transcript 328387 328908 . - . ID=Physo141089;Parent=Physo141089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_93 . CDS 328387 328908 . - 0 ID=Physo141089;Parent=Physo141089;rank=1 scaffold_93 . exon 328387 328908 . - . ID=Physo141089.1;Parent=Physo141089;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_92 1 341412 scaffold_92 . biological_region 574 580 0.999 + . logic_name=eponine scaffold_92 . biological_region 596 597 0.999 + . logic_name=eponine scaffold_92 . biological_region 817 819 0.999 - . logic_name=eponine scaffold_92 . biological_region 872 877 0.999 + . logic_name=eponine scaffold_92 . biological_region 896 896 0.999 + . logic_name=eponine scaffold_92 . repeat_region 4034 4055 . ? . description=trf scaffold_92 . repeat_region 8678 8747 . ? . description=trf scaffold_92 ensembl protein_coding_gene 479 1780 . + . ID=Physo109335;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920001;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 479 1780 . + . ID=Physo109335;Parent=Physo109335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 479 1780 . + 0 ID=Physo109335;Parent=Physo109335;rank=1 scaffold_92 . exon 479 1780 . + . ID=Physo109335.1;Parent=Physo109335;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 3580 4909 . + . ID=Physo109336;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920002;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 3580 4909 . + . ID=Physo109336;Parent=Physo109336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 3580 3964 . + . ID=Physo109336.1;Parent=Physo109336;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 . CDS 3644 3964 . + 0 ID=Physo109336;Parent=Physo109336;rank=1 scaffold_92 . CDS 4067 4190 . + 0 ID=Physo109336;Parent=Physo109336;rank=2 scaffold_92 . exon 4067 4190 . + . ID=Physo109336.2;Parent=Physo109336;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_92 . CDS 4270 4510 . + 0 ID=Physo109336;Parent=Physo109336;rank=3 scaffold_92 . exon 4270 4510 . + . ID=Physo109336.3;Parent=Physo109336;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_92 . CDS 4575 4689 . + 0 ID=Physo109336;Parent=Physo109336;rank=4 scaffold_92 . exon 4575 4689 . + . ID=Physo109336.4;Parent=Physo109336;constitutive=1;ensembl_phase=2;rank=4 scaffold_92 . CDS 4757 4909 . + 0 ID=Physo109336;Parent=Physo109336;rank=5 scaffold_92 . exon 4757 4909 . + . ID=Physo109336.5;Parent=Physo109336;constitutive=1;rank=5 scaffold_92 ensembl protein_coding_gene 1992 3264 . - . ID=Physo140939;biotype=protein_coding;description=PsAvh272 [Source:UniProtKB/TrEMBL%3BAcc:E0W5J5];external_name=estExt_fgenesh1_pg.C_920002;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 1992 3264 . - . ID=Physo140939;Parent=Physo140939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 1992 2123 . - 0 ID=Physo140939;Parent=Physo140939;rank=4 scaffold_92 . exon 1992 2123 . - . ID=Physo140939.4;Parent=Physo140939;constitutive=1;rank=4 scaffold_92 . CDS 2199 2250 . - 0 ID=Physo140939;Parent=Physo140939;rank=3 scaffold_92 . exon 2199 2250 . - . ID=Physo140939.3;Parent=Physo140939;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 . CDS 2371 2415 . - 0 ID=Physo140939;Parent=Physo140939;rank=2 scaffold_92 . exon 2371 2415 . - . ID=Physo140939.2;Parent=Physo140939;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_92 . CDS 2753 3264 . - 0 ID=Physo140939;Parent=Physo140939;rank=1 scaffold_92 . exon 2753 3264 . - . ID=Physo140939.1;Parent=Physo140939;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 ensembl protein_coding_gene 7689 9848 . - . ID=Physo140941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920004;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 7689 9848 . - . ID=Physo140941;Parent=Physo140941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 7689 7722 . - 0 ID=Physo140941;Parent=Physo140941;rank=6 scaffold_92 . exon 7689 7722 . - . ID=Physo140941.6;Parent=Physo140941;constitutive=1;ensembl_phase=2;rank=6 scaffold_92 . CDS 7754 7857 . - 0 ID=Physo140941;Parent=Physo140941;rank=5 scaffold_92 . exon 7754 7857 . - . ID=Physo140941.5;Parent=Physo140941;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_92 . CDS 7937 8286 . - 0 ID=Physo140941;Parent=Physo140941;rank=4 scaffold_92 . exon 7937 8286 . - . ID=Physo140941.4;Parent=Physo140941;constitutive=1;ensembl_phase=1;rank=4 scaffold_92 . CDS 8363 8601 . - 0 ID=Physo140941;Parent=Physo140941;rank=3 scaffold_92 . exon 8363 8601 . - . ID=Physo140941.3;Parent=Physo140941;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_92 . CDS 8994 9406 . - 0 ID=Physo140941;Parent=Physo140941;rank=2 scaffold_92 . exon 8994 9406 . - . ID=Physo140941.2;Parent=Physo140941;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_92 . CDS 9501 9848 . - 0 ID=Physo140941;Parent=Physo140941;rank=1 scaffold_92 . exon 9501 9848 . - . ID=Physo140941.1;Parent=Physo140941;constitutive=1;rank=1 scaffold_92 . repeat_region 10693 10701 . ? . description=dust scaffold_92 ensembl protein_coding_gene 16148 20473 . + . ID=Physo140942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920005;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 16148 20473 . + . ID=Physo140942;Parent=Physo140942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 16148 17008 . + 0 ID=Physo140942;Parent=Physo140942;rank=1 scaffold_92 . exon 16148 17008 . + . ID=Physo140942.1;Parent=Physo140942;constitutive=1;rank=1 scaffold_92 . CDS 17108 17630 . + 0 ID=Physo140942;Parent=Physo140942;rank=2 scaffold_92 . exon 17108 17630 . + . ID=Physo140942.2;Parent=Physo140942;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_92 . CDS 17856 18459 . + 0 ID=Physo140942;Parent=Physo140942;rank=3 scaffold_92 . exon 17856 18459 . + . ID=Physo140942.3;Parent=Physo140942;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_92 . CDS 18706 18890 . + 0 ID=Physo140942;Parent=Physo140942;rank=4 scaffold_92 . exon 18706 18890 . + . ID=Physo140942.4;Parent=Physo140942;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_92 . CDS 19002 20473 . + 0 ID=Physo140942;Parent=Physo140942;rank=5 scaffold_92 . exon 19002 20473 . + . ID=Physo140942.5;Parent=Physo140942;constitutive=1;ensembl_phase=1;rank=5 scaffold_92 . repeat_region 21625 21661 . ? . description=trf scaffold_92 . repeat_region 23841 24145 . ? . description=trf scaffold_92 . biological_region 23849 23853 0.999 + . logic_name=eponine scaffold_92 . repeat_region 23935 24146 . ? . description=trf scaffold_92 . biological_region 24104 24108 0.999 - . logic_name=eponine scaffold_92 . biological_region 24139 24142 0.999 - . logic_name=eponine scaffold_92 . biological_region 24161 24165 0.999 + . logic_name=eponine scaffold_92 . biological_region 24318 24319 0.999 - . logic_name=eponine scaffold_92 . biological_region 25119 25124 0.999 - . logic_name=eponine scaffold_92 . biological_region 25306 25306 0.999 - . logic_name=eponine scaffold_92 . biological_region 25441 25445 0.999 + . logic_name=eponine scaffold_92 . biological_region 25502 25510 0.999 + . logic_name=eponine scaffold_92 . biological_region 25525 25526 0.999 + . logic_name=eponine scaffold_92 . biological_region 25788 25795 0.999 - . logic_name=eponine scaffold_92 ensembl protein_coding_gene 22080 22987 . - . ID=Physo140943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920006;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 22080 22987 . - . ID=Physo140943;Parent=Physo140943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 22080 22219 . - . ID=Physo140943.5;Parent=Physo140943;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_92 . CDS 22104 22219 . - 0 ID=Physo140943;Parent=Physo140943;rank=5 scaffold_92 . CDS 22337 22439 . - 0 ID=Physo140943;Parent=Physo140943;rank=4 scaffold_92 . exon 22337 22439 . - . ID=Physo140943.4;Parent=Physo140943;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_92 . CDS 22630 22698 . - 0 ID=Physo140943;Parent=Physo140943;rank=3 scaffold_92 . exon 22630 22698 . - . ID=Physo140943.3;Parent=Physo140943;constitutive=1;rank=3 scaffold_92 . CDS 22743 22870 . - 0 ID=Physo140943;Parent=Physo140943;rank=2 scaffold_92 . exon 22743 22870 . - . ID=Physo140943.2;Parent=Physo140943;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 22954 22987 . - 0 ID=Physo140943;Parent=Physo140943;rank=1 scaffold_92 . exon 22954 22987 . - . ID=Physo140943.1;Parent=Physo140943;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 23219 24996 . - . ID=Physo140944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920007;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 23219 24996 . - . ID=Physo140944;Parent=Physo140944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 23219 24996 . - . ID=Physo140944.1;Parent=Physo140944;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_92 . CDS 23638 24909 . - 0 ID=Physo140944;Parent=Physo140944;rank=1 scaffold_92 . repeat_region 31100 31297 . ? . description=dust scaffold_92 ensembl protein_coding_gene 35487 36674 . + . ID=Physo109337;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920003;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 35487 36674 . + . ID=Physo109337;Parent=Physo109337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 35487 35557 . + 0 ID=Physo109337;Parent=Physo109337;rank=1 scaffold_92 . exon 35487 35557 . + . ID=Physo109337.1;Parent=Physo109337;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . CDS 35711 36422 . + 0 ID=Physo109337;Parent=Physo109337;rank=2 scaffold_92 . exon 35711 36422 . + . ID=Physo109337.2;Parent=Physo109337;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 . CDS 36443 36443 . + 0 ID=Physo109337;Parent=Physo109337;rank=3 scaffold_92 . exon 36443 36443 . + . ID=Physo109337.3;Parent=Physo109337;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_92 . CDS 36511 36674 . + 0 ID=Physo109337;Parent=Physo109337;rank=4 scaffold_92 . exon 36511 36674 . + . ID=Physo109337.4;Parent=Physo109337;constitutive=1;ensembl_phase=1;rank=4 scaffold_92 ensembl protein_coding_gene 29716 30925 . - . ID=Physo121435;biotype=protein_coding;external_name=estExt_Genewise1.C_920034;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 29716 30925 . - . ID=Physo121435;Parent=Physo121435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 29716 30762 . - 0 ID=Physo121435;Parent=Physo121435;rank=2 scaffold_92 . exon 29716 30762 . - . ID=Physo121435.2;Parent=Physo121435;constitutive=1;rank=2 scaffold_92 . CDS 30800 30865 . - 0 ID=Physo121435;Parent=Physo121435;rank=1 scaffold_92 . exon 30800 30925 . - . ID=Physo121435.1;Parent=Physo121435;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 ensembl protein_coding_gene 33792 35295 . + . ID=Physo140946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920009;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 33792 35295 . + . ID=Physo140946;Parent=Physo140946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 33792 35295 . + . ID=Physo140946.1;Parent=Physo140946;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 . CDS 33841 35295 . + 0 ID=Physo140946;Parent=Physo140946;rank=1 scaffold_92 ensembl protein_coding_gene 36777 38367 . - . ID=Physo140948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920011;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 36777 38367 . - . ID=Physo140948;Parent=Physo140948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 36777 37143 . - 0 ID=Physo140948;Parent=Physo140948;rank=3 scaffold_92 . exon 36777 37143 . - . ID=Physo140948.3;Parent=Physo140948;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 . CDS 37210 37388 . - 0 ID=Physo140948;Parent=Physo140948;rank=2 scaffold_92 . exon 37210 37388 . - . ID=Physo140948.2;Parent=Physo140948;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_92 . CDS 37459 38367 . - 0 ID=Physo140948;Parent=Physo140948;rank=1 scaffold_92 . exon 37459 38367 . - . ID=Physo140948.1;Parent=Physo140948;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 38608 39976 . - . ID=Physo140949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920012;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 38608 39976 . - . ID=Physo140949;Parent=Physo140949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 38608 39541 . - . ID=Physo140949.2;Parent=Physo140949;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_92 . CDS 38715 39541 . - 0 ID=Physo140949;Parent=Physo140949;rank=2 scaffold_92 . CDS 39640 39925 . - 0 ID=Physo140949;Parent=Physo140949;rank=1 scaffold_92 . biological_region 39113 39113 0.999 + . logic_name=eponine scaffold_92 . biological_region 39132 39135 0.999 + . logic_name=eponine scaffold_92 . repeat_region 39204 39245 . ? . description=trf scaffold_92 . repeat_region 39216 39251 . ? . description=trf scaffold_92 . biological_region 39310 39310 0.999 - . logic_name=eponine scaffold_92 . biological_region 39715 39719 0.999 + . logic_name=eponine scaffold_92 . biological_region 42780 42783 0.999 - . logic_name=eponine scaffold_92 . biological_region 45330 45334 0.999 + . logic_name=eponine scaffold_92 . biological_region 45360 45365 0.999 + . logic_name=eponine scaffold_92 . biological_region 45383 45386 0.999 + . logic_name=eponine scaffold_92 . biological_region 45475 45475 0.999 + . logic_name=eponine scaffold_92 . biological_region 48022 48022 0.999 + . logic_name=eponine scaffold_92 . biological_region 48266 48266 0.999 - . logic_name=eponine scaffold_92 . biological_region 48317 48323 0.999 + . logic_name=eponine scaffold_92 . exon 39640 39976 . - . ID=Physo140949.1;Parent=Physo140949;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_92 ensembl protein_coding_gene 40633 41325 . + . ID=Physo140950;biotype=protein_coding;description=PsAvh454 [Source:UniProtKB/TrEMBL%3BAcc:E0W5J6];external_name=estExt_fgenesh1_pg.C_920013;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 40633 41325 . + . ID=Physo140950;Parent=Physo140950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 40633 41325 . + 0 ID=Physo140950;Parent=Physo140950;rank=1 scaffold_92 . exon 40633 41325 . + . ID=Physo140950.1;Parent=Physo140950;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 42291 44629 . - . ID=Physo140951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920014;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 42291 44629 . - . ID=Physo140951;Parent=Physo140951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 42291 42552 . - . ID=Physo140951.6;Parent=Physo140951;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_92 . CDS 42439 42552 . - 0 ID=Physo140951;Parent=Physo140951;rank=6 scaffold_92 . CDS 42628 43003 . - 0 ID=Physo140951;Parent=Physo140951;rank=5 scaffold_92 . exon 42628 43003 . - . ID=Physo140951.5;Parent=Physo140951;constitutive=1;ensembl_phase=2;rank=5 scaffold_92 . CDS 43075 43158 . - 0 ID=Physo140951;Parent=Physo140951;rank=4 scaffold_92 . exon 43075 43158 . - . ID=Physo140951.4;Parent=Physo140951;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_92 . CDS 43226 43608 . - 0 ID=Physo140951;Parent=Physo140951;rank=3 scaffold_92 . exon 43226 43608 . - . ID=Physo140951.3;Parent=Physo140951;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_92 . CDS 43684 44447 . - 0 ID=Physo140951;Parent=Physo140951;rank=2 scaffold_92 . exon 43684 44447 . - . ID=Physo140951.2;Parent=Physo140951;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 44554 44629 . - 0 ID=Physo140951;Parent=Physo140951;rank=1 scaffold_92 . exon 44554 44629 . - . ID=Physo140951.1;Parent=Physo140951;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 44798 45103 . + . ID=Physo140952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920015;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 44798 45103 . + . ID=Physo140952;Parent=Physo140952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 44798 45103 . + 0 ID=Physo140952;Parent=Physo140952;rank=1 scaffold_92 . exon 44798 45103 . + . ID=Physo140952.1;Parent=Physo140952;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 45351 48592 . - . ID=Physo140953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920016;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 45351 48592 . - . ID=Physo140953;Parent=Physo140953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 45351 45751 . - 0 ID=Physo140953;Parent=Physo140953;rank=4 scaffold_92 . exon 45351 45751 . - . ID=Physo140953.4;Parent=Physo140953;constitutive=1;ensembl_phase=1;rank=4 scaffold_92 . CDS 45837 45941 . - 0 ID=Physo140953;Parent=Physo140953;rank=3 scaffold_92 . exon 45837 45941 . - . ID=Physo140953.3;Parent=Physo140953;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_92 . CDS 46035 48468 . - 0 ID=Physo140953;Parent=Physo140953;rank=2 scaffold_92 . exon 46035 48468 . - . ID=Physo140953.2;Parent=Physo140953;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_92 . CDS 48552 48566 . - 0 ID=Physo140953;Parent=Physo140953;rank=1 scaffold_92 . exon 48552 48592 . - . ID=Physo140953.1;Parent=Physo140953;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 ensembl protein_coding_gene 48731 49858 . - . ID=Physo140954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920017;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 48731 49858 . - . ID=Physo140954;Parent=Physo140954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 48731 49858 . - . ID=Physo140954.1;Parent=Physo140954;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_92 . CDS 48914 49789 . - 0 ID=Physo140954;Parent=Physo140954;rank=1 scaffold_92 . repeat_region 54583 54640 . ? . description=dust scaffold_92 ensembl protein_coding_gene 53496 54651 . - . ID=Physo121452;biotype=protein_coding;external_name=estExt_Genewise1.C_920051;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 53496 54651 . - . ID=Physo121452;Parent=Physo121452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 53496 54647 . - 0 ID=Physo121452;Parent=Physo121452;rank=1 scaffold_92 . exon 53496 54651 . - . ID=Physo121452.1;Parent=Physo121452;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 ensembl protein_coding_gene 52087 53021 . + . ID=Physo140955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920018;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 52087 53021 . + . ID=Physo140955;Parent=Physo140955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 52087 52094 . + . ID=Physo140955.1;Parent=Physo140955;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 . CDS 52089 52094 . + 0 ID=Physo140955;Parent=Physo140955;rank=1 scaffold_92 . CDS 52490 52691 . + 0 ID=Physo140955;Parent=Physo140955;rank=2 scaffold_92 . exon 52490 52691 . + . ID=Physo140955.2;Parent=Physo140955;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_92 . CDS 52763 53019 . + 0 ID=Physo140955;Parent=Physo140955;rank=3 scaffold_92 . exon 52763 53021 . + . ID=Physo140955.3;Parent=Physo140955;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_92 ensembl protein_coding_gene 54868 57666 . + . ID=Physo140957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920020;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 54868 57666 . + . ID=Physo140957;Parent=Physo140957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 54868 57666 . + 0 ID=Physo140957;Parent=Physo140957;rank=1 scaffold_92 . exon 54868 57666 . + . ID=Physo140957.1;Parent=Physo140957;constitutive=1;rank=1 scaffold_92 . repeat_region 59510 59564 . ? . description=trf scaffold_92 . biological_region 60073 60074 0.999 - . logic_name=eponine scaffold_92 . repeat_region 60703 60735 . ? . description=trf scaffold_92 . biological_region 60798 60802 0.999 + . logic_name=eponine scaffold_92 . biological_region 60818 60825 0.999 - . logic_name=eponine scaffold_92 . biological_region 60869 60874 0.999 - . logic_name=eponine scaffold_92 . biological_region 60878 60880 0.999 + . logic_name=eponine scaffold_92 . biological_region 60908 60912 0.999 + . logic_name=eponine scaffold_92 . biological_region 60926 60927 0.999 + . logic_name=eponine scaffold_92 . biological_region 61017 61021 0.999 + . logic_name=eponine scaffold_92 . biological_region 61053 61059 0.999 - . logic_name=eponine scaffold_92 . biological_region 63144 63147 0.999 - . logic_name=eponine scaffold_92 . biological_region 63170 63173 0.999 - . logic_name=eponine scaffold_92 . biological_region 64304 64305 0.999 + . logic_name=eponine scaffold_92 ensembl protein_coding_gene 65375 67004 . + . ID=Physo109338;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920004;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 65375 67004 . + . ID=Physo109338;Parent=Physo109338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 65375 65552 . + . ID=Physo109338.1;Parent=Physo109338;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_92 . CDS 65399 65552 . + 0 ID=Physo109338;Parent=Physo109338;rank=1 scaffold_92 . CDS 65660 65883 . + 0 ID=Physo109338;Parent=Physo109338;rank=2 scaffold_92 . exon 65660 65883 . + . ID=Physo109338.2;Parent=Physo109338;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 65964 66539 . + 0 ID=Physo109338;Parent=Physo109338;rank=3 scaffold_92 . exon 65964 66539 . + . ID=Physo109338.3;Parent=Physo109338;constitutive=1;rank=3 scaffold_92 . CDS 66616 66867 . + 0 ID=Physo109338;Parent=Physo109338;rank=4 scaffold_92 . exon 66616 67004 . + . ID=Physo109338.4;Parent=Physo109338;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_92 ensembl protein_coding_gene 67181 68110 . - . ID=Physo121464;biotype=protein_coding;external_name=estExt_Genewise1.C_920063;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 67181 68110 . - . ID=Physo121464;Parent=Physo121464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 67181 67524 . - 0 ID=Physo121464;Parent=Physo121464;rank=2 scaffold_92 . exon 67181 67524 . - . ID=Physo121464.2;Parent=Physo121464;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 67570 68104 . - 0 ID=Physo121464;Parent=Physo121464;rank=1 scaffold_92 . exon 67570 68110 . - . ID=Physo121464.1;Parent=Physo121464;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_92 ensembl protein_coding_gene 59506 65204 . - . ID=Physo140958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920021;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 59506 65204 . - . ID=Physo140958;Parent=Physo140958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 59506 61550 . - 0 ID=Physo140958;Parent=Physo140958;rank=7 scaffold_92 . exon 59506 61550 . - . ID=Physo140958.7;Parent=Physo140958;constitutive=1;ensembl_phase=1;rank=7 scaffold_92 . CDS 61890 61975 . - 0 ID=Physo140958;Parent=Physo140958;rank=6 scaffold_92 . exon 61890 61975 . - . ID=Physo140958.6;Parent=Physo140958;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_92 . CDS 62143 63072 . - 0 ID=Physo140958;Parent=Physo140958;rank=5 scaffold_92 . exon 62143 63072 . - . ID=Physo140958.5;Parent=Physo140958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_92 . CDS 63103 63165 . - 0 ID=Physo140958;Parent=Physo140958;rank=4 scaffold_92 . exon 63103 63165 . - . ID=Physo140958.4;Parent=Physo140958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_92 . CDS 63262 64716 . - 0 ID=Physo140958;Parent=Physo140958;rank=3 scaffold_92 . exon 63262 64716 . - . ID=Physo140958.3;Parent=Physo140958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_92 . CDS 64790 64917 . - 0 ID=Physo140958;Parent=Physo140958;rank=2 scaffold_92 . exon 64790 64917 . - . ID=Physo140958.2;Parent=Physo140958;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_92 . CDS 64995 65204 . - 0 ID=Physo140958;Parent=Physo140958;rank=1 scaffold_92 . exon 64995 65204 . - . ID=Physo140958.1;Parent=Physo140958;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 72857 73537 . + . ID=Physo140961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920024;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 72857 73537 . + . ID=Physo140961;Parent=Physo140961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 72857 73537 . + 0 ID=Physo140961;Parent=Physo140961;rank=1 scaffold_92 . exon 72857 73537 . + . ID=Physo140961.1;Parent=Physo140961;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 75751 76584 . + . ID=Physo140962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920025;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 75751 76584 . + . ID=Physo140962;Parent=Physo140962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 75751 76009 . + 0 ID=Physo140962;Parent=Physo140962;rank=1 scaffold_92 . exon 75751 76009 . + . ID=Physo140962.1;Parent=Physo140962;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 . CDS 76229 76584 . + 0 ID=Physo140962;Parent=Physo140962;rank=2 scaffold_92 . exon 76229 76584 . + . ID=Physo140962.2;Parent=Physo140962;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . repeat_region 79717 79772 . ? . description=trf scaffold_92 . repeat_region 79717 79786 . ? . description=trf scaffold_92 . repeat_region 79759 79787 . ? . description=trf scaffold_92 . repeat_region 87182 87190 . ? . description=dust scaffold_92 ensembl protein_coding_gene 82272 83921 . + . ID=Physo140963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920026;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 82272 83921 . + . ID=Physo140963;Parent=Physo140963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 82272 83921 . + 0 ID=Physo140963;Parent=Physo140963;rank=1 scaffold_92 . exon 82272 83921 . + . ID=Physo140963.1;Parent=Physo140963;constitutive=1;rank=1 scaffold_92 . biological_region 94276 94278 0.999 + . logic_name=eponine scaffold_92 . biological_region 96152 96154 0.999 + . logic_name=eponine scaffold_92 . biological_region 97535 97537 0.999 + . logic_name=eponine scaffold_92 ensembl protein_coding_gene 90897 93725 . + . ID=Physo140964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920027;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 90897 93725 . + . ID=Physo140964;Parent=Physo140964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 90897 93091 . + 0 ID=Physo140964;Parent=Physo140964;rank=1 scaffold_92 . exon 90897 93091 . + . ID=Physo140964.1;Parent=Physo140964;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . CDS 93147 93273 . + 0 ID=Physo140964;Parent=Physo140964;rank=2 scaffold_92 . exon 93147 93273 . + . ID=Physo140964.2;Parent=Physo140964;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 . CDS 93512 93595 . + 0 ID=Physo140964;Parent=Physo140964;rank=3 scaffold_92 . exon 93512 93725 . + . ID=Physo140964.3;Parent=Physo140964;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_92 ensembl protein_coding_gene 93966 95525 . - . ID=Physo140965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920028;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 93966 95525 . - . ID=Physo140965;Parent=Physo140965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 93966 94080 . - 0 ID=Physo140965;Parent=Physo140965;rank=4 scaffold_92 . exon 93966 94080 . - . ID=Physo140965.4;Parent=Physo140965;constitutive=1;ensembl_phase=2;rank=4 scaffold_92 . CDS 94146 95229 . - 0 ID=Physo140965;Parent=Physo140965;rank=3 scaffold_92 . exon 94146 95229 . - . ID=Physo140965.3;Parent=Physo140965;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_92 . CDS 95305 95424 . - 0 ID=Physo140965;Parent=Physo140965;rank=2 scaffold_92 . exon 95305 95424 . - . ID=Physo140965.2;Parent=Physo140965;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 95510 95525 . - 0 ID=Physo140965;Parent=Physo140965;rank=1 scaffold_92 . exon 95510 95525 . - . ID=Physo140965.1;Parent=Physo140965;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 95812 99021 . - . ID=Physo140966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920029;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 95812 99021 . - . ID=Physo140966;Parent=Physo140966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 95812 99021 . - 0 ID=Physo140966;Parent=Physo140966;rank=1 scaffold_92 . exon 95812 99021 . - . ID=Physo140966.1;Parent=Physo140966;constitutive=1;rank=1 scaffold_92 . repeat_region 103642 103649 . ? . description=dust scaffold_92 . repeat_region 105198 105210 . ? . description=dust scaffold_92 ensembl protein_coding_gene 102145 103438 . + . ID=Physo109339;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920005;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 102145 103438 . + . ID=Physo109339;Parent=Physo109339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 102145 103407 . + 0 ID=Physo109339;Parent=Physo109339;rank=1 scaffold_92 . exon 102145 103438 . + . ID=Physo109339.1;Parent=Physo109339;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_92 . biological_region 109061 109061 0.999 - . logic_name=eponine scaffold_92 . biological_region 109858 109858 0.999 - . logic_name=eponine scaffold_92 . biological_region 110114 110116 0.999 + . logic_name=eponine scaffold_92 . biological_region 110220 110220 0.999 - . logic_name=eponine scaffold_92 . biological_region 110584 110586 0.999 + . logic_name=eponine scaffold_92 . biological_region 110679 110681 0.999 - . logic_name=eponine scaffold_92 . biological_region 110727 110734 0.999 - . logic_name=eponine scaffold_92 . biological_region 110734 110736 0.999 + . logic_name=eponine scaffold_92 . biological_region 110770 110772 0.999 - . logic_name=eponine scaffold_92 ensembl protein_coding_gene 108392 109634 . - . ID=Physo109340;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920006;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 108392 109634 . - . ID=Physo109340;Parent=Physo109340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 108392 109634 . - . ID=Physo109340.1;Parent=Physo109340;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_92 . CDS 108423 109634 . - 0 ID=Physo109340;Parent=Physo109340;rank=1 scaffold_92 ensembl protein_coding_gene 115477 116069 . + . ID=Physo140969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920032;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 115477 116069 . + . ID=Physo140969;Parent=Physo140969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 115477 115560 . + 0 ID=Physo140969;Parent=Physo140969;rank=1 scaffold_92 . exon 115477 115560 . + . ID=Physo140969.1;Parent=Physo140969;constitutive=1;rank=1 scaffold_92 . CDS 115640 115732 . + 0 ID=Physo140969;Parent=Physo140969;rank=2 scaffold_92 . exon 115640 115732 . + . ID=Physo140969.2;Parent=Physo140969;constitutive=1;rank=2 scaffold_92 . CDS 115814 115957 . + 0 ID=Physo140969;Parent=Physo140969;rank=3 scaffold_92 . exon 115814 116069 . + . ID=Physo140969.3;Parent=Physo140969;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_92 ensembl protein_coding_gene 116929 119073 . + . ID=Physo140970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920033;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 116929 119073 . + . ID=Physo140970;Parent=Physo140970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 116929 117726 . + 0 ID=Physo140970;Parent=Physo140970;rank=1 scaffold_92 . exon 116929 117726 . + . ID=Physo140970.1;Parent=Physo140970;constitutive=1;rank=1 scaffold_92 . CDS 117975 118151 . + 0 ID=Physo140970;Parent=Physo140970;rank=2 scaffold_92 . CDS 118220 118267 . + 0 ID=Physo140970;Parent=Physo140970;rank=3 scaffold_92 . CDS 118549 119073 . + 0 ID=Physo140970;Parent=Physo140970;rank=4 scaffold_92 . repeat_region 121454 121483 . ? . description=trf scaffold_92 . repeat_region 122629 122638 . ? . description=dust scaffold_92 ensembl protein_coding_gene 119335 120186 . - . ID=Physo109341;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920007;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 119335 120186 . - . ID=Physo109341;Parent=Physo109341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 119335 119430 . - 0 ID=Physo109341;Parent=Physo109341;rank=3 scaffold_92 . exon 119335 119430 . - . ID=Physo109341.3;Parent=Physo109341;constitutive=1;rank=3 scaffold_92 . CDS 119501 119773 . - 0 ID=Physo109341;Parent=Physo109341;rank=2 scaffold_92 . exon 119501 119773 . - . ID=Physo109341.2;Parent=Physo109341;constitutive=1;rank=2 scaffold_92 . CDS 119842 120186 . - 0 ID=Physo109341;Parent=Physo109341;rank=1 scaffold_92 . exon 119842 120186 . - . ID=Physo109341.1;Parent=Physo109341;constitutive=1;rank=1 scaffold_92 . exon 117975 118151 . + . ID=Physo140970.2;Parent=Physo140970;constitutive=1;rank=2 scaffold_92 . exon 118220 118267 . + . ID=Physo140970.3;Parent=Physo140970;constitutive=1;rank=3 scaffold_92 . exon 118549 119073 . + . ID=Physo140970.4;Parent=Physo140970;constitutive=1;rank=4 scaffold_92 ensembl protein_coding_gene 120883 122577 . - . ID=Physo140972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920035;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 120883 122577 . - . ID=Physo140972;Parent=Physo140972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 120883 122577 . - 0 ID=Physo140972;Parent=Physo140972;rank=1 scaffold_92 . exon 120883 122577 . - . ID=Physo140972.1;Parent=Physo140972;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 123748 125469 . - . ID=Physo140973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920036;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 123748 125469 . - . ID=Physo140973;Parent=Physo140973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 123748 125469 . - 0 ID=Physo140973;Parent=Physo140973;rank=1 scaffold_92 . exon 123748 125469 . - . ID=Physo140973.1;Parent=Physo140973;constitutive=1;rank=1 scaffold_92 . biological_region 128947 128949 0.999 + . logic_name=eponine scaffold_92 . biological_region 129821 129821 0.999 + . logic_name=eponine scaffold_92 . biological_region 131560 131565 0.999 + . logic_name=eponine scaffold_92 . biological_region 133543 133544 0.999 + . logic_name=eponine scaffold_92 . biological_region 133557 133560 0.999 - . logic_name=eponine scaffold_92 ensembl protein_coding_gene 129685 130184 . - . ID=Physo121481;biotype=protein_coding;external_name=estExt_Genewise1.C_920080;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 129685 130184 . - . ID=Physo121481;Parent=Physo121481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 129685 129939 . - . ID=Physo121481.2;Parent=Physo121481;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_92 . CDS 129931 129939 . - 0 ID=Physo121481;Parent=Physo121481;rank=2 scaffold_92 . CDS 130018 130173 . - 0 ID=Physo121481;Parent=Physo121481;rank=1 scaffold_92 . exon 130018 130184 . - . ID=Physo121481.1;Parent=Physo121481;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 ensembl protein_coding_gene 127542 129222 . - . ID=Physo140974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920037;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 127542 129222 . - . ID=Physo140974;Parent=Physo140974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 127542 127580 . - 0 ID=Physo140974;Parent=Physo140974;rank=2 scaffold_92 . exon 127542 127580 . - . ID=Physo140974.2;Parent=Physo140974;constitutive=1;rank=2 scaffold_92 . CDS 127864 129222 . - 0 ID=Physo140974;Parent=Physo140974;rank=1 scaffold_92 . exon 127864 129222 . - . ID=Physo140974.1;Parent=Physo140974;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 131512 134267 . + . ID=Physo140975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920038;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 131512 134267 . + . ID=Physo140975;Parent=Physo140975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 131512 131781 . + 0 ID=Physo140975;Parent=Physo140975;rank=1 scaffold_92 . exon 131512 131781 . + . ID=Physo140975.1;Parent=Physo140975;constitutive=1;rank=1 scaffold_92 . CDS 131871 134267 . + 0 ID=Physo140975;Parent=Physo140975;rank=2 scaffold_92 . exon 131871 134267 . + . ID=Physo140975.2;Parent=Physo140975;constitutive=1;rank=2 scaffold_92 . repeat_region 141894 141963 . + . description=(CAG)n scaffold_92 . repeat_region 141910 141963 . ? . description=dust scaffold_92 . repeat_region 141916 141963 . ? . description=trf scaffold_92 ensembl protein_coding_gene 137974 139069 . - . ID=Physo140976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920039;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 137974 139069 . - . ID=Physo140976;Parent=Physo140976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 137974 138104 . - . ID=Physo140976.4;Parent=Physo140976;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_92 . CDS 138006 138104 . - 0 ID=Physo140976;Parent=Physo140976;rank=4 scaffold_92 . CDS 138198 138761 . - 0 ID=Physo140976;Parent=Physo140976;rank=3 scaffold_92 . exon 138198 138761 . - . ID=Physo140976.3;Parent=Physo140976;constitutive=1;rank=3 scaffold_92 . CDS 138839 138917 . - 0 ID=Physo140976;Parent=Physo140976;rank=2 scaffold_92 . exon 138839 138917 . - . ID=Physo140976.2;Parent=Physo140976;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 . CDS 139046 139053 . - 0 ID=Physo140976;Parent=Physo140976;rank=1 scaffold_92 . exon 139046 139069 . - . ID=Physo140976.1;Parent=Physo140976;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_92 ensembl protein_coding_gene 139206 141935 . + . ID=Physo140977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920040;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 139206 141935 . + . ID=Physo140977;Parent=Physo140977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 139206 139714 . + 0 ID=Physo140977;Parent=Physo140977;rank=1 scaffold_92 . exon 139206 139714 . + . ID=Physo140977.1;Parent=Physo140977;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . CDS 139797 140412 . + 0 ID=Physo140977;Parent=Physo140977;rank=2 scaffold_92 . exon 139797 140412 . + . ID=Physo140977.2;Parent=Physo140977;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 . CDS 140484 141935 . + 0 ID=Physo140977;Parent=Physo140977;rank=3 scaffold_92 . exon 140484 141935 . + . ID=Physo140977.3;Parent=Physo140977;constitutive=1;rank=3 scaffold_92 ensembl protein_coding_gene 142436 146628 . + . ID=Physo140978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920041;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 142436 146628 . + . ID=Physo140978;Parent=Physo140978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 142436 146626 . + 0 ID=Physo140978;Parent=Physo140978;rank=1 scaffold_92 . exon 142436 146628 . + . ID=Physo140978.1;Parent=Physo140978;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_92 . biological_region 146333 146338 0.999 + . logic_name=eponine scaffold_92 . biological_region 146393 146394 0.999 - . logic_name=eponine scaffold_92 ensembl protein_coding_gene 146778 149474 . - . ID=Physo109342;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920008;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 146778 149474 . - . ID=Physo109342;Parent=Physo109342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 146778 149109 . - 0 ID=Physo109342;Parent=Physo109342;rank=3 scaffold_92 . exon 146778 149109 . - . ID=Physo109342.3;Parent=Physo109342;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 . CDS 149194 149264 . - 0 ID=Physo109342;Parent=Physo109342;rank=2 scaffold_92 . exon 149194 149264 . - . ID=Physo109342.2;Parent=Physo109342;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_92 . CDS 149349 149474 . - 0 ID=Physo109342;Parent=Physo109342;rank=1 scaffold_92 . exon 149349 149474 . - . ID=Physo109342.1;Parent=Physo109342;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 149718 150991 . - . ID=Physo140980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920043;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 149718 150991 . - . ID=Physo140980;Parent=Physo140980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 149718 150624 . - 0 ID=Physo140980;Parent=Physo140980;rank=3 scaffold_92 . exon 149718 150624 . - . ID=Physo140980.3;Parent=Physo140980;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 . CDS 150712 150849 . - 0 ID=Physo140980;Parent=Physo140980;rank=2 scaffold_92 . exon 150712 150849 . - . ID=Physo140980.2;Parent=Physo140980;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_92 . CDS 150933 150991 . - 0 ID=Physo140980;Parent=Physo140980;rank=1 scaffold_92 . exon 150933 150991 . - . ID=Physo140980.1;Parent=Physo140980;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . repeat_region 162321 162338 . ? . description=dust scaffold_92 . repeat_region 165503 165531 . ? . description=trf scaffold_92 . biological_region 172501 172501 0.999 + . logic_name=eponine scaffold_92 ensembl protein_coding_gene 170975 171109 . - . ID=Physo121502;biotype=protein_coding;external_name=estExt_Genewise1.C_920101;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 170975 171109 . - . ID=Physo121502;Parent=Physo121502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 170975 171070 . - 0 ID=Physo121502;Parent=Physo121502;rank=1 scaffold_92 . exon 170975 171109 . - . ID=Physo121502.1;Parent=Physo121502;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 ensembl tRNA_gene 177950 178021 . + . ID=EPrPSOG00000000190;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_92 ensembl transcript 177950 178021 . + . ID=EPrPSOT00000000190;Parent=EPrPSOG00000000190;biotype=tRNA;logic_name=ncrna_eg scaffold_92 . exon 177950 178021 . + . ID=EPrPSOE00000000190;Parent=EPrPSOT00000000190;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 182796 183059 . + . ID=Physo121507;biotype=protein_coding;external_name=estExt_Genewise1.C_920106;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 182796 183059 . + . ID=Physo121507;Parent=Physo121507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 182796 183059 . + . ID=Physo121507.1;Parent=Physo121507;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 . CDS 182841 183059 . + 0 ID=Physo121507;Parent=Physo121507;rank=1 scaffold_92 ensembl protein_coding_gene 178329 178763 . - . ID=Physo140981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920044;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 178329 178763 . - . ID=Physo140981;Parent=Physo140981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 178329 178763 . - 0 ID=Physo140981;Parent=Physo140981;rank=1 scaffold_92 . exon 178329 178763 . - . ID=Physo140981.1;Parent=Physo140981;constitutive=1;rank=1 scaffold_92 . repeat_region 185369 185377 . ? . description=dust scaffold_92 . biological_region 186480 186486 0.999 + . logic_name=eponine scaffold_92 . repeat_region 189434 189446 . ? . description=dust scaffold_92 . repeat_region 189552 189560 . ? . description=dust scaffold_92 . repeat_region 190318 190327 . ? . description=dust scaffold_92 . biological_region 192370 192372 0.999 - . logic_name=eponine scaffold_92 . repeat_region 192403 192423 . ? . description=dust scaffold_92 . repeat_region 192403 192423 . ? . description=trf scaffold_92 . repeat_region 194252 194326 . ? . description=trf scaffold_92 . repeat_region 194271 194377 . ? . description=trf scaffold_92 . repeat_region 194304 194335 . ? . description=trf scaffold_92 . repeat_region 194316 194386 . ? . description=trf scaffold_92 ensembl protein_coding_gene 193710 194385 . - . ID=Physo140982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920045;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 193710 194385 . - . ID=Physo140982;Parent=Physo140982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 193710 194099 . - 0 ID=Physo140982;Parent=Physo140982;rank=2 scaffold_92 . exon 193710 194099 . - . ID=Physo140982.2;Parent=Physo140982;constitutive=1;rank=2 scaffold_92 . CDS 194203 194385 . - 0 ID=Physo140982;Parent=Physo140982;rank=1 scaffold_92 . exon 194203 194385 . - . ID=Physo140982.1;Parent=Physo140982;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 201486 203133 . - . ID=Physo140983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920046;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 201486 203133 . - . ID=Physo140983;Parent=Physo140983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 201486 201745 . - 0 ID=Physo140983;Parent=Physo140983;rank=5 scaffold_92 . exon 201486 201745 . - . ID=Physo140983.5;Parent=Physo140983;constitutive=1;ensembl_phase=1;rank=5 scaffold_92 . CDS 201814 202106 . - 0 ID=Physo140983;Parent=Physo140983;rank=4 scaffold_92 . exon 201814 202106 . - . ID=Physo140983.4;Parent=Physo140983;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_92 . CDS 202205 202293 . - 0 ID=Physo140983;Parent=Physo140983;rank=3 scaffold_92 . exon 202205 202293 . - . ID=Physo140983.3;Parent=Physo140983;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_92 . CDS 202348 202711 . - 0 ID=Physo140983;Parent=Physo140983;rank=2 scaffold_92 . exon 202348 202711 . - . ID=Physo140983.2;Parent=Physo140983;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 . CDS 202784 203133 . - 0 ID=Physo140983;Parent=Physo140983;rank=1 scaffold_92 . exon 202784 203133 . - . ID=Physo140983.1;Parent=Physo140983;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . repeat_region 206237 206278 . ? . description=trf scaffold_92 . biological_region 206362 206363 0.999 + . logic_name=eponine scaffold_92 . repeat_region 206954 206974 . ? . description=dust scaffold_92 . repeat_region 207689 207696 . ? . description=dust scaffold_92 . repeat_region 207724 207746 . ? . description=dust scaffold_92 . repeat_region 207812 207838 . ? . description=dust scaffold_92 . repeat_region 207812 207838 . ? . description=trf scaffold_92 . repeat_region 207852 207901 . ? . description=dust scaffold_92 . repeat_region 207960 207993 . ? . description=dust scaffold_92 . repeat_region 210758 211122 . ? . description=trf scaffold_92 . biological_region 212853 212854 0.999 - . logic_name=eponine scaffold_92 ensembl protein_coding_gene 212064 215939 . - . ID=Physo158227;biotype=protein_coding;external_name=C_scaffold_92000002;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 212064 215939 . - . ID=Physo158227;Parent=Physo158227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 212064 212359 . - 0 ID=Physo158227;Parent=Physo158227;rank=12 scaffold_92 . exon 212064 212359 . - . ID=Physo158227.12;Parent=Physo158227;constitutive=1;ensembl_phase=1;rank=12 scaffold_92 . CDS 212435 213497 . - 0 ID=Physo158227;Parent=Physo158227;rank=11 scaffold_92 . exon 212435 213497 . - . ID=Physo158227.11;Parent=Physo158227;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_92 . CDS 213558 213715 . - 0 ID=Physo158227;Parent=Physo158227;rank=10 scaffold_92 . exon 213558 213715 . - . ID=Physo158227.10;Parent=Physo158227;constitutive=1;ensembl_phase=1;rank=10 scaffold_92 . CDS 213767 213968 . - 0 ID=Physo158227;Parent=Physo158227;rank=9 scaffold_92 . exon 213767 213968 . - . ID=Physo158227.9;Parent=Physo158227;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_92 . CDS 214054 214311 . - 0 ID=Physo158227;Parent=Physo158227;rank=8 scaffold_92 . exon 214054 214311 . - . ID=Physo158227.8;Parent=Physo158227;constitutive=1;rank=8 scaffold_92 . CDS 214380 214787 . - 0 ID=Physo158227;Parent=Physo158227;rank=7 scaffold_92 . exon 214380 214787 . - . ID=Physo158227.7;Parent=Physo158227;constitutive=1;rank=7 scaffold_92 . CDS 214857 214863 . - 0 ID=Physo158227;Parent=Physo158227;rank=6 scaffold_92 . CDS 214900 215068 . - 0 ID=Physo158227;Parent=Physo158227;rank=5 scaffold_92 . CDS 215126 215297 . - 0 ID=Physo158227;Parent=Physo158227;rank=4 scaffold_92 . CDS 215461 215539 . - 0 ID=Physo158227;Parent=Physo158227;rank=3 scaffold_92 . CDS 215757 215810 . - 0 ID=Physo158227;Parent=Physo158227;rank=2 scaffold_92 . CDS 215872 215939 . - 0 ID=Physo158227;Parent=Physo158227;rank=1 scaffold_92 ensembl protein_coding_gene 216608 217335 . - . ID=Physo140985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920048;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 216608 217335 . - . ID=Physo140985;Parent=Physo140985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 216608 216625 . - 0 ID=Physo140985;Parent=Physo140985;rank=4 scaffold_92 . exon 216608 216625 . - . ID=Physo140985.4;Parent=Physo140985;constitutive=1;rank=4 scaffold_92 . CDS 216708 216806 . - 0 ID=Physo140985;Parent=Physo140985;rank=3 scaffold_92 . exon 216708 216806 . - . ID=Physo140985.3;Parent=Physo140985;constitutive=1;rank=3 scaffold_92 . CDS 217069 217164 . - 0 ID=Physo140985;Parent=Physo140985;rank=2 scaffold_92 . exon 217069 217164 . - . ID=Physo140985.2;Parent=Physo140985;constitutive=1;rank=2 scaffold_92 . CDS 217240 217335 . - 0 ID=Physo140985;Parent=Physo140985;rank=1 scaffold_92 . exon 217240 217335 . - . ID=Physo140985.1;Parent=Physo140985;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 218664 221584 . + . ID=Physo140986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920049;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 218664 221584 . + . ID=Physo140986;Parent=Physo140986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 218664 219169 . + 0 ID=Physo140986;Parent=Physo140986;rank=1 scaffold_92 . exon 218664 219169 . + . ID=Physo140986.1;Parent=Physo140986;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . CDS 219254 219367 . + 0 ID=Physo140986;Parent=Physo140986;rank=2 scaffold_92 . exon 219254 219367 . + . ID=Physo140986.2;Parent=Physo140986;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_92 . CDS 219579 219650 . + 0 ID=Physo140986;Parent=Physo140986;rank=3 scaffold_92 . exon 219579 219650 . + . ID=Physo140986.3;Parent=Physo140986;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_92 . CDS 219732 219812 . + 0 ID=Physo140986;Parent=Physo140986;rank=4 scaffold_92 . exon 219732 219812 . + . ID=Physo140986.4;Parent=Physo140986;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_92 . CDS 219875 219943 . + 0 ID=Physo140986;Parent=Physo140986;rank=5 scaffold_92 . exon 219875 219943 . + . ID=Physo140986.5;Parent=Physo140986;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_92 . CDS 220013 221453 . + 0 ID=Physo140986;Parent=Physo140986;rank=6 scaffold_92 . exon 220013 221584 . + . ID=Physo140986.6;Parent=Physo140986;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_92 ensembl protein_coding_gene 221627 222580 . - . ID=Physo140987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920050;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 221627 222580 . - . ID=Physo140987;Parent=Physo140987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 221627 221813 . - 0 ID=Physo140987;Parent=Physo140987;rank=3 scaffold_92 . exon 221627 221813 . - . ID=Physo140987.3;Parent=Physo140987;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 . CDS 221915 222048 . - 0 ID=Physo140987;Parent=Physo140987;rank=2 scaffold_92 . exon 221915 222048 . - . ID=Physo140987.2;Parent=Physo140987;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_92 . CDS 222143 222580 . - 0 ID=Physo140987;Parent=Physo140987;rank=1 scaffold_92 . exon 222143 222580 . - . ID=Physo140987.1;Parent=Physo140987;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 223922 228157 . + . ID=Physo140988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920051;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 223922 228157 . + . ID=Physo140988;Parent=Physo140988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 223922 228157 . + 0 ID=Physo140988;Parent=Physo140988;rank=1 scaffold_92 . exon 223922 228157 . + . ID=Physo140988.1;Parent=Physo140988;constitutive=1;rank=1 scaffold_92 . exon 214857 214863 . - . ID=Physo158227.6;Parent=Physo158227;constitutive=1;ensembl_phase=2;rank=6 scaffold_92 . exon 214900 215068 . - . ID=Physo158227.5;Parent=Physo158227;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_92 . exon 215126 215297 . - . ID=Physo158227.4;Parent=Physo158227;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_92 . exon 215461 215539 . - . ID=Physo158227.3;Parent=Physo158227;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 . exon 215757 215810 . - . ID=Physo158227.2;Parent=Physo158227;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_92 . exon 215872 215939 . - . ID=Physo158227.1;Parent=Physo158227;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . repeat_region 224904 225043 . ? . description=trf scaffold_92 . repeat_region 226446 226486 . ? . description=trf scaffold_92 . biological_region 226818 226821 0.999 - . logic_name=eponine scaffold_92 . biological_region 227151 227153 0.999 - . logic_name=eponine scaffold_92 . biological_region 227205 227209 0.999 + . logic_name=eponine scaffold_92 . biological_region 227290 227292 0.999 - . logic_name=eponine scaffold_92 . biological_region 227915 227916 0.999 + . logic_name=eponine scaffold_92 . biological_region 228009 228009 0.999 - . logic_name=eponine scaffold_92 . biological_region 232371 232371 0.999 + . logic_name=eponine scaffold_92 . biological_region 232374 232377 0.999 - . logic_name=eponine scaffold_92 . biological_region 232528 232529 0.999 + . logic_name=eponine scaffold_92 . biological_region 232549 232553 0.999 + . logic_name=eponine scaffold_92 . biological_region 232606 232611 0.999 - . logic_name=eponine scaffold_92 . biological_region 233463 233464 0.999 + . logic_name=eponine scaffold_92 ensembl protein_coding_gene 229204 229608 . + . ID=Physo140989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920052;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 229204 229608 . + . ID=Physo140989;Parent=Physo140989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 229204 229608 . + 0 ID=Physo140989;Parent=Physo140989;rank=1 scaffold_92 . exon 229204 229608 . + . ID=Physo140989.1;Parent=Physo140989;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 230186 231855 . + . ID=Physo140990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920053;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 230186 231855 . + . ID=Physo140990;Parent=Physo140990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 230186 230265 . + 0 ID=Physo140990;Parent=Physo140990;rank=1 scaffold_92 . exon 230186 230265 . + . ID=Physo140990.1;Parent=Physo140990;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . CDS 230325 230393 . + 0 ID=Physo140990;Parent=Physo140990;rank=2 scaffold_92 . exon 230325 230393 . + . ID=Physo140990.2;Parent=Physo140990;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_92 . CDS 230478 230650 . + 0 ID=Physo140990;Parent=Physo140990;rank=3 scaffold_92 . exon 230478 230650 . + . ID=Physo140990.3;Parent=Physo140990;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_92 . CDS 230717 231855 . + 0 ID=Physo140990;Parent=Physo140990;rank=4 scaffold_92 . exon 230717 231855 . + . ID=Physo140990.4;Parent=Physo140990;constitutive=1;ensembl_phase=1;rank=4 scaffold_92 ensembl protein_coding_gene 233657 236051 . + . ID=Physo140991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920054;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 233657 236051 . + . ID=Physo140991;Parent=Physo140991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 233657 234261 . + 0 ID=Physo140991;Parent=Physo140991;rank=1 scaffold_92 . exon 233657 234261 . + . ID=Physo140991.1;Parent=Physo140991;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . CDS 234352 234426 . + 0 ID=Physo140991;Parent=Physo140991;rank=2 scaffold_92 . CDS 234509 236051 . + 0 ID=Physo140991;Parent=Physo140991;rank=3 scaffold_92 . repeat_region 234454 234461 . ? . description=dust scaffold_92 . repeat_region 237883 237920 . ? . description=dust scaffold_92 ensembl protein_coding_gene 236233 238437 . - . ID=Physo109343;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920009;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 236233 238437 . - . ID=Physo109343;Parent=Physo109343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 236233 237701 . - 0 ID=Physo109343;Parent=Physo109343;rank=3 scaffold_92 . exon 236233 237701 . - . ID=Physo109343.3;Parent=Physo109343;constitutive=1;ensembl_phase=1;rank=3 scaffold_92 . CDS 237807 237867 . - 0 ID=Physo109343;Parent=Physo109343;rank=2 scaffold_92 . exon 237807 237867 . - . ID=Physo109343.2;Parent=Physo109343;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_92 . CDS 237986 238426 . - 0 ID=Physo109343;Parent=Physo109343;rank=1 scaffold_92 . exon 237986 238437 . - . ID=Physo109343.1;Parent=Physo109343;constitutive=1;ensembl_phase=-1;rank=1 scaffold_92 . exon 234352 234426 . + . ID=Physo140991.2;Parent=Physo140991;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_92 . exon 234509 236051 . + . ID=Physo140991.3;Parent=Physo140991;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 ensembl protein_coding_gene 239793 241548 . - . ID=Physo140994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920057;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 239793 241548 . - . ID=Physo140994;Parent=Physo140994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 239793 240581 . - 0 ID=Physo140994;Parent=Physo140994;rank=3 scaffold_92 . exon 239793 240581 . - . ID=Physo140994.3;Parent=Physo140994;constitutive=1;rank=3 scaffold_92 . CDS 240657 240905 . - 0 ID=Physo140994;Parent=Physo140994;rank=2 scaffold_92 . exon 240657 240905 . - . ID=Physo140994.2;Parent=Physo140994;constitutive=1;rank=2 scaffold_92 . CDS 240988 241548 . - 0 ID=Physo140994;Parent=Physo140994;rank=1 scaffold_92 . exon 240988 241548 . - . ID=Physo140994.1;Parent=Physo140994;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 238595 239667 . + . ID=Physo158230;biotype=protein_coding;external_name=C_scaffold_92000005;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 238595 239667 . + . ID=Physo158230;Parent=Physo158230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 238595 238643 . + 0 ID=Physo158230;Parent=Physo158230;rank=1 scaffold_92 . exon 238595 238643 . + . ID=Physo158230.1;Parent=Physo158230;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 . CDS 238712 238800 . + 0 ID=Physo158230;Parent=Physo158230;rank=2 scaffold_92 . exon 238712 238800 . + . ID=Physo158230.2;Parent=Physo158230;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 238871 238979 . + 0 ID=Physo158230;Parent=Physo158230;rank=3 scaffold_92 . exon 238871 238979 . + . ID=Physo158230.3;Parent=Physo158230;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_92 . CDS 239067 239126 . + 0 ID=Physo158230;Parent=Physo158230;rank=4 scaffold_92 . exon 239067 239126 . + . ID=Physo158230.4;Parent=Physo158230;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_92 . CDS 239196 239267 . + 0 ID=Physo158230;Parent=Physo158230;rank=5 scaffold_92 . exon 239196 239267 . + . ID=Physo158230.5;Parent=Physo158230;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_92 . CDS 239627 239667 . + 0 ID=Physo158230;Parent=Physo158230;rank=6 scaffold_92 . exon 239627 239667 . + . ID=Physo158230.6;Parent=Physo158230;constitutive=1;ensembl_phase=1;rank=6 scaffold_92 . biological_region 245063 245064 0.999 - . logic_name=eponine scaffold_92 . repeat_region 259282 259342 . ? . description=trf scaffold_92 . repeat_region 259780 259884 . ? . description=trf scaffold_92 . repeat_region 261331 261385 . ? . description=trf scaffold_92 . repeat_region 261690 261739 . ? . description=dust scaffold_92 ensembl protein_coding_gene 260599 262624 . + . ID=Physo140995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920058;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 260599 262624 . + . ID=Physo140995;Parent=Physo140995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 260599 260665 . + 0 ID=Physo140995;Parent=Physo140995;rank=1 scaffold_92 . exon 260599 260665 . + . ID=Physo140995.1;Parent=Physo140995;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 . CDS 260756 261645 . + 0 ID=Physo140995;Parent=Physo140995;rank=2 scaffold_92 . exon 260756 261645 . + . ID=Physo140995.2;Parent=Physo140995;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 261788 262624 . + 0 ID=Physo140995;Parent=Physo140995;rank=3 scaffold_92 . exon 261788 262624 . + . ID=Physo140995.3;Parent=Physo140995;constitutive=1;rank=3 scaffold_92 ensembl protein_coding_gene 263329 270277 . + . ID=Physo140996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920059;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 263329 270277 . + . ID=Physo140996;Parent=Physo140996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 263329 263517 . + 0 ID=Physo140996;Parent=Physo140996;rank=1 scaffold_92 . exon 263329 263517 . + . ID=Physo140996.1;Parent=Physo140996;constitutive=1;rank=1 scaffold_92 . CDS 263942 264579 . + 0 ID=Physo140996;Parent=Physo140996;rank=2 scaffold_92 . CDS 264649 265345 . + 0 ID=Physo140996;Parent=Physo140996;rank=3 scaffold_92 . CDS 265379 265833 . + 0 ID=Physo140996;Parent=Physo140996;rank=4 scaffold_92 . CDS 265891 266526 . + 0 ID=Physo140996;Parent=Physo140996;rank=5 scaffold_92 . CDS 266568 268252 . + 0 ID=Physo140996;Parent=Physo140996;rank=6 scaffold_92 . CDS 268496 268711 . + 0 ID=Physo140996;Parent=Physo140996;rank=7 scaffold_92 . CDS 268958 269207 . + 0 ID=Physo140996;Parent=Physo140996;rank=8 scaffold_92 . CDS 269262 269928 . + 0 ID=Physo140996;Parent=Physo140996;rank=9 scaffold_92 . CDS 270007 270115 . + 0 ID=Physo140996;Parent=Physo140996;rank=10 scaffold_92 . CDS 270135 270277 . + 0 ID=Physo140996;Parent=Physo140996;rank=11 scaffold_92 . biological_region 263856 263859 0.999 - . logic_name=eponine scaffold_92 . biological_region 264059 264061 0.999 + . logic_name=eponine scaffold_92 . biological_region 264382 264386 0.999 + . logic_name=eponine scaffold_92 . biological_region 264483 264488 0.999 - . logic_name=eponine scaffold_92 . biological_region 267718 267721 0.999 + . logic_name=eponine scaffold_92 . biological_region 268141 268144 0.999 - . logic_name=eponine scaffold_92 . biological_region 268874 268879 0.999 - . logic_name=eponine scaffold_92 . biological_region 269422 269425 0.999 + . logic_name=eponine scaffold_92 . biological_region 270163 270167 0.999 - . logic_name=eponine scaffold_92 . biological_region 271097 271098 0.999 - . logic_name=eponine scaffold_92 . biological_region 271140 271144 0.999 - . logic_name=eponine scaffold_92 . biological_region 271176 271180 0.999 - . logic_name=eponine scaffold_92 . exon 263942 264579 . + . ID=Physo140996.2;Parent=Physo140996;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_92 . exon 264649 265345 . + . ID=Physo140996.3;Parent=Physo140996;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 . exon 265379 265833 . + . ID=Physo140996.4;Parent=Physo140996;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_92 . exon 265891 266526 . + . ID=Physo140996.5;Parent=Physo140996;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_92 . exon 266568 268252 . + . ID=Physo140996.6;Parent=Physo140996;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_92 . exon 268496 268711 . + . ID=Physo140996.7;Parent=Physo140996;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_92 . exon 268958 269207 . + . ID=Physo140996.8;Parent=Physo140996;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_92 . exon 269262 269928 . + . ID=Physo140996.9;Parent=Physo140996;constitutive=1;ensembl_phase=2;rank=9 scaffold_92 . exon 270007 270115 . + . ID=Physo140996.10;Parent=Physo140996;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_92 . exon 270135 270277 . + . ID=Physo140996.11;Parent=Physo140996;constitutive=1;ensembl_phase=1;rank=11 scaffold_92 . repeat_region 274056 274151 . ? . description=trf scaffold_92 . repeat_region 274090 274169 . ? . description=trf scaffold_92 . repeat_region 274501 274548 . ? . description=trf scaffold_92 . repeat_region 275174 275222 . ? . description=dust scaffold_92 . repeat_region 275175 275210 . ? . description=trf scaffold_92 . repeat_region 275175 275219 . ? . description=trf scaffold_92 . repeat_region 275182 275213 . ? . description=trf scaffold_92 . repeat_region 281582 281589 . ? . description=dust scaffold_92 . repeat_region 282097 282126 . ? . description=trf scaffold_92 ensembl protein_coding_gene 281728 283464 . + . ID=Physo140998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920061;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 281728 283464 . + . ID=Physo140998;Parent=Physo140998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 281728 283062 . + 0 ID=Physo140998;Parent=Physo140998;rank=1 scaffold_92 . exon 281728 283062 . + . ID=Physo140998.1;Parent=Physo140998;constitutive=1;rank=1 scaffold_92 . CDS 283134 283418 . + 0 ID=Physo140998;Parent=Physo140998;rank=2 scaffold_92 ensembl protein_coding_gene 278535 281520 . - . ID=Physo158232;biotype=protein_coding;external_name=C_scaffold_92000007;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 278535 281520 . - . ID=Physo158232;Parent=Physo158232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 278535 278595 . - 0 ID=Physo158232;Parent=Physo158232;rank=11 scaffold_92 . exon 278535 278595 . - . ID=Physo158232.11;Parent=Physo158232;constitutive=1;ensembl_phase=2;rank=11 scaffold_92 . CDS 278669 278754 . - 0 ID=Physo158232;Parent=Physo158232;rank=10 scaffold_92 . exon 278669 278754 . - . ID=Physo158232.10;Parent=Physo158232;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_92 . CDS 279001 279057 . - 0 ID=Physo158232;Parent=Physo158232;rank=9 scaffold_92 . exon 279001 279057 . - . ID=Physo158232.9;Parent=Physo158232;constitutive=1;rank=9 scaffold_92 . CDS 279129 279320 . - 0 ID=Physo158232;Parent=Physo158232;rank=8 scaffold_92 . exon 279129 279320 . - . ID=Physo158232.8;Parent=Physo158232;constitutive=1;rank=8 scaffold_92 . CDS 279424 279532 . - 0 ID=Physo158232;Parent=Physo158232;rank=7 scaffold_92 . exon 279424 279532 . - . ID=Physo158232.7;Parent=Physo158232;constitutive=1;ensembl_phase=2;rank=7 scaffold_92 . CDS 279597 279872 . - 0 ID=Physo158232;Parent=Physo158232;rank=6 scaffold_92 . exon 279597 279872 . - . ID=Physo158232.6;Parent=Physo158232;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_92 . CDS 280149 280237 . - 0 ID=Physo158232;Parent=Physo158232;rank=5 scaffold_92 . exon 280149 280237 . - . ID=Physo158232.5;Parent=Physo158232;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_92 . CDS 280324 280494 . - 0 ID=Physo158232;Parent=Physo158232;rank=4 scaffold_92 . exon 280324 280494 . - . ID=Physo158232.4;Parent=Physo158232;constitutive=1;rank=4 scaffold_92 . CDS 280534 280938 . - 0 ID=Physo158232;Parent=Physo158232;rank=3 scaffold_92 . exon 280534 280938 . - . ID=Physo158232.3;Parent=Physo158232;constitutive=1;rank=3 scaffold_92 . CDS 280966 281419 . - 0 ID=Physo158232;Parent=Physo158232;rank=2 scaffold_92 . exon 280966 281419 . - . ID=Physo158232.2;Parent=Physo158232;constitutive=1;ensembl_phase=2;rank=2 scaffold_92 . CDS 281495 281520 . - 0 ID=Physo158232;Parent=Physo158232;rank=1 scaffold_92 . exon 281495 281520 . - . ID=Physo158232.1;Parent=Physo158232;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 . biological_region 285132 285136 0.999 + . logic_name=eponine scaffold_92 . biological_region 285217 285219 0.999 + . logic_name=eponine scaffold_92 . biological_region 285949 285951 0.999 + . logic_name=eponine scaffold_92 . biological_region 286155 286157 0.999 - . logic_name=eponine scaffold_92 . biological_region 291069 291070 0.999 + . logic_name=eponine scaffold_92 . biological_region 292167 292169 0.999 - . logic_name=eponine scaffold_92 . biological_region 292219 292224 0.999 - . logic_name=eponine scaffold_92 . exon 283134 283464 . + . ID=Physo140998.2;Parent=Physo140998;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_92 ensembl protein_coding_gene 283557 286515 . - . ID=Physo140999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920062;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 283557 286515 . - . ID=Physo140999;Parent=Physo140999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 283557 285342 . - 0 ID=Physo140999;Parent=Physo140999;rank=3 scaffold_92 . exon 283557 285342 . - . ID=Physo140999.3;Parent=Physo140999;constitutive=1;ensembl_phase=2;rank=3 scaffold_92 . CDS 285494 286363 . - 0 ID=Physo140999;Parent=Physo140999;rank=2 scaffold_92 . exon 285494 286363 . - . ID=Physo140999.2;Parent=Physo140999;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_92 . CDS 286436 286515 . - 0 ID=Physo140999;Parent=Physo140999;rank=1 scaffold_92 . exon 286436 286515 . - . ID=Physo140999.1;Parent=Physo140999;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 ensembl protein_coding_gene 287014 290241 . + . ID=Physo141000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920063;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 287014 290241 . + . ID=Physo141000;Parent=Physo141000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 287014 287115 . + 0 ID=Physo141000;Parent=Physo141000;rank=1 scaffold_92 . exon 287014 287115 . + . ID=Physo141000.1;Parent=Physo141000;constitutive=1;rank=1 scaffold_92 . CDS 287192 287257 . + 0 ID=Physo141000;Parent=Physo141000;rank=2 scaffold_92 . exon 287192 287257 . + . ID=Physo141000.2;Parent=Physo141000;constitutive=1;rank=2 scaffold_92 . CDS 287337 287477 . + 0 ID=Physo141000;Parent=Physo141000;rank=3 scaffold_92 . exon 287337 287477 . + . ID=Physo141000.3;Parent=Physo141000;constitutive=1;rank=3 scaffold_92 . CDS 287554 287616 . + 0 ID=Physo141000;Parent=Physo141000;rank=4 scaffold_92 . exon 287554 287616 . + . ID=Physo141000.4;Parent=Physo141000;constitutive=1;rank=4 scaffold_92 . CDS 287688 287741 . + 0 ID=Physo141000;Parent=Physo141000;rank=5 scaffold_92 . exon 287688 287741 . + . ID=Physo141000.5;Parent=Physo141000;constitutive=1;rank=5 scaffold_92 . CDS 287826 288140 . + 0 ID=Physo141000;Parent=Physo141000;rank=6 scaffold_92 . exon 287826 288140 . + . ID=Physo141000.6;Parent=Physo141000;constitutive=1;rank=6 scaffold_92 . CDS 288316 288465 . + 0 ID=Physo141000;Parent=Physo141000;rank=7 scaffold_92 . exon 288316 288465 . + . ID=Physo141000.7;Parent=Physo141000;constitutive=1;rank=7 scaffold_92 . CDS 288539 288619 . + 0 ID=Physo141000;Parent=Physo141000;rank=8 scaffold_92 . exon 288539 288619 . + . ID=Physo141000.8;Parent=Physo141000;constitutive=1;rank=8 scaffold_92 . CDS 288682 288915 . + 0 ID=Physo141000;Parent=Physo141000;rank=9 scaffold_92 . exon 288682 288915 . + . ID=Physo141000.9;Parent=Physo141000;constitutive=1;rank=9 scaffold_92 . CDS 288996 289044 . + 0 ID=Physo141000;Parent=Physo141000;rank=10 scaffold_92 . exon 288996 289044 . + . ID=Physo141000.10;Parent=Physo141000;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_92 . CDS 289183 289308 . + 0 ID=Physo141000;Parent=Physo141000;rank=11 scaffold_92 . exon 289183 289308 . + . ID=Physo141000.11;Parent=Physo141000;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_92 . CDS 289386 289544 . + 0 ID=Physo141000;Parent=Physo141000;rank=12 scaffold_92 . exon 289386 289544 . + . ID=Physo141000.12;Parent=Physo141000;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_92 . CDS 289631 290241 . + 0 ID=Physo141000;Parent=Physo141000;rank=13 scaffold_92 . exon 289631 290241 . + . ID=Physo141000.13;Parent=Physo141000;constitutive=1;ensembl_phase=1;rank=13 scaffold_92 ensembl protein_coding_gene 290337 290714 . - . ID=Physo158235;biotype=protein_coding;external_name=C_scaffold_92000010;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 290337 290714 . - . ID=Physo158235;Parent=Physo158235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 290337 290417 . - 0 ID=Physo158235;Parent=Physo158235;rank=3 scaffold_92 . exon 290337 290417 . - . ID=Physo158235.3;Parent=Physo158235;constitutive=1;rank=3 scaffold_92 . CDS 290502 290567 . - 0 ID=Physo158235;Parent=Physo158235;rank=2 scaffold_92 . exon 290502 290567 . - . ID=Physo158235.2;Parent=Physo158235;constitutive=1;rank=2 scaffold_92 . CDS 290643 290714 . - 0 ID=Physo158235;Parent=Physo158235;rank=1 scaffold_92 . exon 290643 290714 . - . ID=Physo158235.1;Parent=Physo158235;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 290969 291595 . + . ID=Physo158236;biotype=protein_coding;external_name=C_scaffold_92000011;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 290969 291595 . + . ID=Physo158236;Parent=Physo158236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 290969 291595 . + 0 ID=Physo158236;Parent=Physo158236;rank=1 scaffold_92 . exon 290969 291595 . + . ID=Physo158236.1;Parent=Physo158236;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 292004 296494 . + . ID=Physo158237;biotype=protein_coding;external_name=C_scaffold_92000012;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 292004 296494 . + . ID=Physo158237;Parent=Physo158237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 292004 293077 . + 0 ID=Physo158237;Parent=Physo158237;rank=1 scaffold_92 . exon 292004 293077 . + . ID=Physo158237.1;Parent=Physo158237;constitutive=1;rank=1 scaffold_92 . CDS 293255 293518 . + 0 ID=Physo158237;Parent=Physo158237;rank=2 scaffold_92 . CDS 293540 295271 . + 0 ID=Physo158237;Parent=Physo158237;rank=3 scaffold_92 . CDS 295590 295705 . + 0 ID=Physo158237;Parent=Physo158237;rank=4 scaffold_92 . CDS 295760 295925 . + 0 ID=Physo158237;Parent=Physo158237;rank=5 scaffold_92 . CDS 296043 296169 . + 0 ID=Physo158237;Parent=Physo158237;rank=6 scaffold_92 . CDS 296215 296305 . + 0 ID=Physo158237;Parent=Physo158237;rank=7 scaffold_92 . CDS 296420 296494 . + 0 ID=Physo158237;Parent=Physo158237;rank=8 scaffold_92 . repeat_region 293246 293306 . ? . description=trf scaffold_92 . repeat_region 301603 301620 . ? . description=dust scaffold_92 ensembl protein_coding_gene 302142 306325 . - . ID=Physo141004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920067;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 302142 306325 . - . ID=Physo141004;Parent=Physo141004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 302142 303060 . - . ID=Physo141004.3;Parent=Physo141004;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_92 . CDS 302201 303060 . - 0 ID=Physo141004;Parent=Physo141004;rank=3 scaffold_92 . CDS 303181 303542 . - 0 ID=Physo141004;Parent=Physo141004;rank=2 scaffold_92 . CDS 303915 306325 . - 0 ID=Physo141004;Parent=Physo141004;rank=1 scaffold_92 . exon 293255 293518 . + . ID=Physo158237.2;Parent=Physo158237;constitutive=1;rank=2 scaffold_92 . exon 293540 295271 . + . ID=Physo158237.3;Parent=Physo158237;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_92 . exon 295590 295705 . + . ID=Physo158237.4;Parent=Physo158237;constitutive=1;ensembl_phase=1;rank=4 scaffold_92 . exon 295760 295925 . + . ID=Physo158237.5;Parent=Physo158237;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_92 . exon 296043 296169 . + . ID=Physo158237.6;Parent=Physo158237;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_92 . exon 296215 296305 . + . ID=Physo158237.7;Parent=Physo158237;constitutive=1;ensembl_phase=2;rank=7 scaffold_92 . exon 296420 296494 . + . ID=Physo158237.8;Parent=Physo158237;constitutive=1;rank=8 scaffold_92 ensembl protein_coding_gene 296651 300331 . - . ID=Physo158240;biotype=protein_coding;external_name=C_scaffold_92000015;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 296651 300331 . - . ID=Physo158240;Parent=Physo158240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 296651 297438 . - 0 ID=Physo158240;Parent=Physo158240;rank=7 scaffold_92 . exon 296651 297438 . - . ID=Physo158240.7;Parent=Physo158240;constitutive=1;ensembl_phase=1;rank=7 scaffold_92 . CDS 297516 297630 . - 0 ID=Physo158240;Parent=Physo158240;rank=6 scaffold_92 . exon 297516 297630 . - . ID=Physo158240.6;Parent=Physo158240;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_92 . CDS 297697 297930 . - 0 ID=Physo158240;Parent=Physo158240;rank=5 scaffold_92 . exon 297697 297930 . - . ID=Physo158240.5;Parent=Physo158240;constitutive=1;rank=5 scaffold_92 . CDS 298064 298100 . - 0 ID=Physo158240;Parent=Physo158240;rank=4 scaffold_92 . exon 298064 298100 . - . ID=Physo158240.4;Parent=Physo158240;constitutive=1;ensembl_phase=2;rank=4 scaffold_92 . CDS 298235 299626 . - 0 ID=Physo158240;Parent=Physo158240;rank=3 scaffold_92 . exon 298235 299626 . - . ID=Physo158240.3;Parent=Physo158240;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_92 . CDS 299654 299883 . - 0 ID=Physo158240;Parent=Physo158240;rank=2 scaffold_92 . exon 299654 299883 . - . ID=Physo158240.2;Parent=Physo158240;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_92 . CDS 299987 300331 . - 0 ID=Physo158240;Parent=Physo158240;rank=1 scaffold_92 . exon 299987 300331 . - . ID=Physo158240.1;Parent=Physo158240;constitutive=1;rank=1 scaffold_92 . biological_region 305810 305812 0.999 + . logic_name=eponine scaffold_92 . biological_region 306092 306096 0.999 - . logic_name=eponine scaffold_92 . biological_region 306202 306206 0.999 - . logic_name=eponine scaffold_92 . biological_region 307547 307549 0.999 - . logic_name=eponine scaffold_92 ensembl protein_coding_gene 306540 307694 . + . ID=Physo109344;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_920010;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 306540 307694 . + . ID=Physo109344;Parent=Physo109344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 306540 307694 . + 0 ID=Physo109344;Parent=Physo109344;rank=1 scaffold_92 . exon 306540 307694 . + . ID=Physo109344.1;Parent=Physo109344;constitutive=1;rank=1 scaffold_92 . exon 303181 303542 . - . ID=Physo141004.2;Parent=Physo141004;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_92 . exon 303915 306325 . - . ID=Physo141004.1;Parent=Physo141004;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_92 ensembl protein_coding_gene 307826 308203 . - . ID=Physo158243;biotype=protein_coding;external_name=C_scaffold_92000018;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 307826 308203 . - . ID=Physo158243;Parent=Physo158243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 307826 308203 . - 0 ID=Physo158243;Parent=Physo158243;rank=1 scaffold_92 . exon 307826 308203 . - . ID=Physo158243.1;Parent=Physo158243;constitutive=1;rank=1 scaffold_92 . repeat_region 314551 314601 . ? . description=trf scaffold_92 . repeat_region 318586 318719 . + . description=Polinton-1_PI scaffold_92 ensembl protein_coding_gene 312658 313701 . - . ID=Physo141007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920070;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 312658 313701 . - . ID=Physo141007;Parent=Physo141007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 312658 312666 . - 0 ID=Physo141007;Parent=Physo141007;rank=3 scaffold_92 . exon 312658 312666 . - . ID=Physo141007.3;Parent=Physo141007;constitutive=1;rank=3 scaffold_92 . CDS 312764 312952 . - 0 ID=Physo141007;Parent=Physo141007;rank=2 scaffold_92 . exon 312764 312952 . - . ID=Physo141007.2;Parent=Physo141007;constitutive=1;rank=2 scaffold_92 . CDS 313054 313701 . - 0 ID=Physo141007;Parent=Physo141007;rank=1 scaffold_92 . exon 313054 313701 . - . ID=Physo141007.1;Parent=Physo141007;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 314010 317957 . - . ID=Physo141008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920071;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 314010 317957 . - . ID=Physo141008;Parent=Physo141008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 314010 315083 . - 0 ID=Physo141008;Parent=Physo141008;rank=5 scaffold_92 . exon 314010 315083 . - . ID=Physo141008.5;Parent=Physo141008;constitutive=1;rank=5 scaffold_92 . CDS 315338 315772 . - 0 ID=Physo141008;Parent=Physo141008;rank=4 scaffold_92 . exon 315338 315772 . - . ID=Physo141008.4;Parent=Physo141008;constitutive=1;rank=4 scaffold_92 . CDS 316250 316489 . - 0 ID=Physo141008;Parent=Physo141008;rank=3 scaffold_92 . exon 316250 316489 . - . ID=Physo141008.3;Parent=Physo141008;constitutive=1;rank=3 scaffold_92 . CDS 316765 316949 . - 0 ID=Physo141008;Parent=Physo141008;rank=2 scaffold_92 . exon 316765 316949 . - . ID=Physo141008.2;Parent=Physo141008;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 317240 317957 . - 0 ID=Physo141008;Parent=Physo141008;rank=1 scaffold_92 . exon 317240 317957 . - . ID=Physo141008.1;Parent=Physo141008;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 ensembl protein_coding_gene 319913 323646 . - . ID=Physo141009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920072;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 319913 323646 . - . ID=Physo141009;Parent=Physo141009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 319913 320141 . - 0 ID=Physo141009;Parent=Physo141009;rank=9 scaffold_92 . exon 319913 320141 . - . ID=Physo141009.9;Parent=Physo141009;constitutive=1;ensembl_phase=2;rank=9 scaffold_92 . CDS 320210 320522 . - 0 ID=Physo141009;Parent=Physo141009;rank=8 scaffold_92 . exon 320210 320522 . - . ID=Physo141009.8;Parent=Physo141009;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_92 . CDS 320606 321062 . - 0 ID=Physo141009;Parent=Physo141009;rank=7 scaffold_92 . exon 320606 321062 . - . ID=Physo141009.7;Parent=Physo141009;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_92 . CDS 321138 321199 . - 0 ID=Physo141009;Parent=Physo141009;rank=6 scaffold_92 . exon 321138 321199 . - . ID=Physo141009.6;Parent=Physo141009;constitutive=1;ensembl_phase=1;rank=6 scaffold_92 . CDS 321381 322759 . - 0 ID=Physo141009;Parent=Physo141009;rank=5 scaffold_92 . exon 321381 322759 . - . ID=Physo141009.5;Parent=Physo141009;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_92 . CDS 322838 323035 . - 0 ID=Physo141009;Parent=Physo141009;rank=4 scaffold_92 . CDS 323108 323235 . - 0 ID=Physo141009;Parent=Physo141009;rank=3 scaffold_92 . CDS 323323 323523 . - 0 ID=Physo141009;Parent=Physo141009;rank=2 scaffold_92 . CDS 323596 323646 . - 0 ID=Physo141009;Parent=Physo141009;rank=1 scaffold_92 . biological_region 322163 322165 0.999 + . logic_name=eponine scaffold_92 . biological_region 322989 322992 0.999 - . logic_name=eponine scaffold_92 . biological_region 324259 324260 0.999 + . logic_name=eponine scaffold_92 . biological_region 324300 324304 0.999 + . logic_name=eponine scaffold_92 . biological_region 329437 329440 0.999 + . logic_name=eponine scaffold_92 . biological_region 329470 329472 0.999 + . logic_name=eponine scaffold_92 . biological_region 329490 329496 0.999 - . logic_name=eponine scaffold_92 . biological_region 329502 329506 0.999 + . logic_name=eponine scaffold_92 . biological_region 329509 329520 0.999 - . logic_name=eponine scaffold_92 . biological_region 329513 329515 0.999 + . logic_name=eponine scaffold_92 . biological_region 329556 329565 0.999 - . logic_name=eponine scaffold_92 . biological_region 329563 329576 0.999 + . logic_name=eponine scaffold_92 . biological_region 329579 329585 0.999 - . logic_name=eponine scaffold_92 . biological_region 329653 329658 0.999 - . logic_name=eponine scaffold_92 . biological_region 329692 329697 0.999 - . logic_name=eponine scaffold_92 . biological_region 329719 329720 0.999 - . logic_name=eponine scaffold_92 . biological_region 329802 329808 0.999 + . logic_name=eponine scaffold_92 . biological_region 329856 329859 0.999 + . logic_name=eponine scaffold_92 . biological_region 329910 329910 0.999 - . logic_name=eponine scaffold_92 . biological_region 329941 329946 0.999 - . logic_name=eponine scaffold_92 . biological_region 329961 329963 0.999 - . logic_name=eponine scaffold_92 . biological_region 330529 330531 0.999 + . logic_name=eponine scaffold_92 . biological_region 330725 330731 0.999 - . logic_name=eponine scaffold_92 . exon 322838 323035 . - . ID=Physo141009.4;Parent=Physo141009;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_92 . exon 323108 323235 . - . ID=Physo141009.3;Parent=Physo141009;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_92 . exon 323323 323523 . - . ID=Physo141009.2;Parent=Physo141009;constitutive=1;rank=2 scaffold_92 . exon 323596 323646 . - . ID=Physo141009.1;Parent=Physo141009;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 328936 330069 . - . ID=Physo141012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920075;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 328936 330069 . - . ID=Physo141012;Parent=Physo141012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 328936 330069 . - . ID=Physo141012.1;Parent=Physo141012;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_92 . CDS 328993 330069 . - 0 ID=Physo141012;Parent=Physo141012;rank=1 scaffold_92 ensembl protein_coding_gene 324116 328894 . + . ID=Physo158245;biotype=protein_coding;external_name=C_scaffold_92000020;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 324116 328894 . + . ID=Physo158245;Parent=Physo158245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 324116 324221 . + 0 ID=Physo158245;Parent=Physo158245;rank=1 scaffold_92 . exon 324116 324221 . + . ID=Physo158245.1;Parent=Physo158245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 . CDS 324338 324399 . + 0 ID=Physo158245;Parent=Physo158245;rank=2 scaffold_92 . exon 324338 324399 . + . ID=Physo158245.2;Parent=Physo158245;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 . CDS 324482 324547 . + 0 ID=Physo158245;Parent=Physo158245;rank=3 scaffold_92 . exon 324482 324547 . + . ID=Physo158245.3;Parent=Physo158245;constitutive=1;rank=3 scaffold_92 . CDS 324620 324721 . + 0 ID=Physo158245;Parent=Physo158245;rank=4 scaffold_92 . exon 324620 324721 . + . ID=Physo158245.4;Parent=Physo158245;constitutive=1;rank=4 scaffold_92 . CDS 324809 324855 . + 0 ID=Physo158245;Parent=Physo158245;rank=5 scaffold_92 . exon 324809 324855 . + . ID=Physo158245.5;Parent=Physo158245;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_92 . CDS 324929 325046 . + 0 ID=Physo158245;Parent=Physo158245;rank=6 scaffold_92 . exon 324929 325046 . + . ID=Physo158245.6;Parent=Physo158245;constitutive=1;ensembl_phase=2;rank=6 scaffold_92 . CDS 325132 325257 . + 0 ID=Physo158245;Parent=Physo158245;rank=7 scaffold_92 . exon 325132 325257 . + . ID=Physo158245.7;Parent=Physo158245;constitutive=1;rank=7 scaffold_92 . CDS 325530 325622 . + 0 ID=Physo158245;Parent=Physo158245;rank=8 scaffold_92 . exon 325530 325622 . + . ID=Physo158245.8;Parent=Physo158245;constitutive=1;rank=8 scaffold_92 . CDS 325815 326131 . + 0 ID=Physo158245;Parent=Physo158245;rank=9 scaffold_92 . exon 325815 326131 . + . ID=Physo158245.9;Parent=Physo158245;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_92 . CDS 326402 327236 . + 0 ID=Physo158245;Parent=Physo158245;rank=10 scaffold_92 . exon 326402 327236 . + . ID=Physo158245.10;Parent=Physo158245;constitutive=1;ensembl_phase=2;rank=10 scaffold_92 . CDS 327264 327530 . + 0 ID=Physo158245;Parent=Physo158245;rank=11 scaffold_92 . exon 327264 327530 . + . ID=Physo158245.11;Parent=Physo158245;constitutive=1;rank=11 scaffold_92 . CDS 327599 328477 . + 0 ID=Physo158245;Parent=Physo158245;rank=12 scaffold_92 . exon 327599 328477 . + . ID=Physo158245.12;Parent=Physo158245;constitutive=1;rank=12 scaffold_92 . CDS 328505 328894 . + 0 ID=Physo158245;Parent=Physo158245;rank=13 scaffold_92 . exon 328505 328894 . + . ID=Physo158245.13;Parent=Physo158245;constitutive=1;rank=13 scaffold_92 . repeat_region 332771 332778 . ? . description=dust scaffold_92 . repeat_region 338813 338846 . ? . description=dust scaffold_92 ensembl protein_coding_gene 334177 334740 . + . ID=Physo141013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920076;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 334177 334740 . + . ID=Physo141013;Parent=Physo141013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 334177 334183 . + 0 ID=Physo141013;Parent=Physo141013;rank=1 scaffold_92 . exon 334177 334183 . + . ID=Physo141013.1;Parent=Physo141013;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_92 . CDS 334232 334740 . + 0 ID=Physo141013;Parent=Physo141013;rank=2 scaffold_92 . exon 334232 334740 . + . ID=Physo141013.2;Parent=Physo141013;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 ensembl protein_coding_gene 335543 336564 . + . ID=Physo141014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920077;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 335543 336564 . + . ID=Physo141014;Parent=Physo141014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . exon 335543 336372 . + . ID=Physo141014.1;Parent=Physo141014;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_92 . CDS 335559 336372 . + 0 ID=Physo141014;Parent=Physo141014;rank=1 scaffold_92 . CDS 336536 336564 . + 0 ID=Physo141014;Parent=Physo141014;rank=2 scaffold_92 . exon 336536 336564 . + . ID=Physo141014.2;Parent=Physo141014;constitutive=1;ensembl_phase=1;rank=2 scaffold_92 ensembl protein_coding_gene 336795 337583 . - . ID=Physo141015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920078;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 336795 337583 . - . ID=Physo141015;Parent=Physo141015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 336795 337583 . - 0 ID=Physo141015;Parent=Physo141015;rank=1 scaffold_92 . exon 336795 337583 . - . ID=Physo141015.1;Parent=Physo141015;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 337840 338796 . - . ID=Physo141016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920079;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 337840 338796 . - . ID=Physo141016;Parent=Physo141016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 337840 338796 . - 0 ID=Physo141016;Parent=Physo141016;rank=1 scaffold_92 . exon 337840 338796 . - . ID=Physo141016.1;Parent=Physo141016;constitutive=1;rank=1 scaffold_92 ensembl protein_coding_gene 339149 340138 . - . ID=Physo141017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_920080;logic_name=jgi_physo1_1 scaffold_92 ensembl transcript 339149 340138 . - . ID=Physo141017;Parent=Physo141017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_92 . CDS 339149 340138 . - 0 ID=Physo141017;Parent=Physo141017;rank=1 scaffold_92 . exon 339149 340138 . - . ID=Physo141017.1;Parent=Physo141017;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_90 1 346561 scaffold_90 . repeat_region 1422 2525 . ? . description=dust scaffold_90 . repeat_region 4923 4930 . ? . description=dust scaffold_90 . repeat_region 5707 5869 . ? . description=dust scaffold_90 . biological_region 8605 8612 0.999 + . logic_name=eponine scaffold_90 . biological_region 9277 9282 0.999 + . logic_name=eponine scaffold_90 . repeat_region 9341 11560 . - . description=GypsyPi-1c_I-int scaffold_90 . repeat_region 9768 9793 . ? . description=trf scaffold_90 ensembl protein_coding_gene 2563 4100 . - . ID=Physo140796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900001;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 2563 4100 . - . ID=Physo140796;Parent=Physo140796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 2563 2583 . - 0 ID=Physo140796;Parent=Physo140796;rank=4 scaffold_90 . exon 2563 2583 . - . ID=Physo140796.4;Parent=Physo140796;constitutive=1;rank=4 scaffold_90 . CDS 2658 3479 . - 0 ID=Physo140796;Parent=Physo140796;rank=3 scaffold_90 . exon 2658 3479 . - . ID=Physo140796.3;Parent=Physo140796;constitutive=1;rank=3 scaffold_90 . CDS 3512 3525 . - 0 ID=Physo140796;Parent=Physo140796;rank=2 scaffold_90 . exon 3512 3525 . - . ID=Physo140796.2;Parent=Physo140796;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 3560 4100 . - 0 ID=Physo140796;Parent=Physo140796;rank=1 scaffold_90 . exon 3560 4100 . - . ID=Physo140796.1;Parent=Physo140796;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 8211 14260 . - . ID=Physo140797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900002;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 8211 14260 . - . ID=Physo140797;Parent=Physo140797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 8211 9163 . - 0 ID=Physo140797;Parent=Physo140797;rank=9 scaffold_90 . exon 8211 9163 . - . ID=Physo140797.9;Parent=Physo140797;constitutive=1;ensembl_phase=1;rank=9 scaffold_90 . CDS 9210 10873 . - 0 ID=Physo140797;Parent=Physo140797;rank=8 scaffold_90 . exon 9210 10873 . - . ID=Physo140797.8;Parent=Physo140797;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_90 . CDS 10923 11146 . - 0 ID=Physo140797;Parent=Physo140797;rank=7 scaffold_90 . CDS 11175 11300 . - 0 ID=Physo140797;Parent=Physo140797;rank=6 scaffold_90 . CDS 11418 12058 . - 0 ID=Physo140797;Parent=Physo140797;rank=5 scaffold_90 . CDS 12091 12569 . - 0 ID=Physo140797;Parent=Physo140797;rank=4 scaffold_90 . CDS 12802 13069 . - 0 ID=Physo140797;Parent=Physo140797;rank=3 scaffold_90 . CDS 13594 13984 . - 0 ID=Physo140797;Parent=Physo140797;rank=2 scaffold_90 . CDS 14045 14260 . - 0 ID=Physo140797;Parent=Physo140797;rank=1 scaffold_90 . exon 10923 11146 . - . ID=Physo140797.7;Parent=Physo140797;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_90 . exon 11175 11300 . - . ID=Physo140797.6;Parent=Physo140797;constitutive=1;rank=6 scaffold_90 . exon 11418 12058 . - . ID=Physo140797.5;Parent=Physo140797;constitutive=1;ensembl_phase=1;rank=5 scaffold_90 . exon 12091 12569 . - . ID=Physo140797.4;Parent=Physo140797;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_90 . exon 12802 13069 . - . ID=Physo140797.3;Parent=Physo140797;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_90 . exon 13594 13984 . - . ID=Physo140797.2;Parent=Physo140797;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_90 . exon 14045 14260 . - . ID=Physo140797.1;Parent=Physo140797;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 14588 15301 . - . ID=Physo140798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900003;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 14588 15301 . - . ID=Physo140798;Parent=Physo140798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 14588 15301 . - 0 ID=Physo140798;Parent=Physo140798;rank=1 scaffold_90 . exon 14588 15301 . - . ID=Physo140798.1;Parent=Physo140798;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 15783 16370 . - . ID=Physo140799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900004;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 15783 16370 . - . ID=Physo140799;Parent=Physo140799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 15783 16081 . - 0 ID=Physo140799;Parent=Physo140799;rank=2 scaffold_90 . exon 15783 16081 . - . ID=Physo140799.2;Parent=Physo140799;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 16328 16370 . - 0 ID=Physo140799;Parent=Physo140799;rank=1 scaffold_90 . exon 16328 16370 . - . ID=Physo140799.1;Parent=Physo140799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . repeat_region 20022 20045 . ? . description=dust scaffold_90 . repeat_region 20051 20113 . ? . description=trf scaffold_90 . repeat_region 20355 20396 . ? . description=trf scaffold_90 . biological_region 23542 23547 0.999 + . logic_name=eponine scaffold_90 . biological_region 23589 23593 0.999 - . logic_name=eponine scaffold_90 . biological_region 23648 23648 0.999 - . logic_name=eponine scaffold_90 . repeat_region 24658 24665 . ? . description=dust scaffold_90 . biological_region 29198 29203 0.999 - . logic_name=eponine scaffold_90 ensembl protein_coding_gene 28085 29590 . + . ID=Physo109315;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_900001;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 28085 29590 . + . ID=Physo109315;Parent=Physo109315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 28085 29590 . + 0 ID=Physo109315;Parent=Physo109315;rank=1 scaffold_90 . exon 28085 29590 . + . ID=Physo109315.1;Parent=Physo109315;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 23468 23824 . - . ID=Physo140800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900005;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 23468 23824 . - . ID=Physo140800;Parent=Physo140800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 23468 23824 . - 0 ID=Physo140800;Parent=Physo140800;rank=1 scaffold_90 . exon 23468 23824 . - . ID=Physo140800.1;Parent=Physo140800;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 25672 27936 . + . ID=Physo140801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900006;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 25672 27936 . + . ID=Physo140801;Parent=Physo140801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 25672 26082 . + 0 ID=Physo140801;Parent=Physo140801;rank=1 scaffold_90 . exon 25672 26082 . + . ID=Physo140801.1;Parent=Physo140801;constitutive=1;rank=1 scaffold_90 . CDS 26145 26350 . + 0 ID=Physo140801;Parent=Physo140801;rank=2 scaffold_90 . exon 26145 26350 . + . ID=Physo140801.2;Parent=Physo140801;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_90 . CDS 26375 27935 . + 0 ID=Physo140801;Parent=Physo140801;rank=3 scaffold_90 . exon 26375 27936 . + . ID=Physo140801.3;Parent=Physo140801;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_90 ensembl protein_coding_gene 32737 33337 . + . ID=Physo140803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900008;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 32737 33337 . + . ID=Physo140803;Parent=Physo140803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 32737 33067 . + 0 ID=Physo140803;Parent=Physo140803;rank=1 scaffold_90 . exon 32737 33067 . + . ID=Physo140803.1;Parent=Physo140803;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 33318 33337 . + 0 ID=Physo140803;Parent=Physo140803;rank=2 scaffold_90 . exon 33318 33337 . + . ID=Physo140803.2;Parent=Physo140803;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 ensembl protein_coding_gene 38985 41823 . - . ID=Physo158203;biotype=protein_coding;external_name=C_scaffold_90000001;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 38985 41823 . - . ID=Physo158203;Parent=Physo158203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 38985 39106 . - 0 ID=Physo158203;Parent=Physo158203;rank=12 scaffold_90 . exon 38985 39106 . - . ID=Physo158203.12;Parent=Physo158203;constitutive=1;ensembl_phase=1;rank=12 scaffold_90 . CDS 39178 39336 . - 0 ID=Physo158203;Parent=Physo158203;rank=11 scaffold_90 . exon 39178 39336 . - . ID=Physo158203.11;Parent=Physo158203;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_90 . CDS 39408 39469 . - 0 ID=Physo158203;Parent=Physo158203;rank=10 scaffold_90 . exon 39408 39469 . - . ID=Physo158203.10;Parent=Physo158203;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_90 . CDS 39540 39582 . - 0 ID=Physo158203;Parent=Physo158203;rank=9 scaffold_90 . exon 39540 39582 . - . ID=Physo158203.9;Parent=Physo158203;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_90 . CDS 39790 40026 . - 0 ID=Physo158203;Parent=Physo158203;rank=8 scaffold_90 . CDS 40132 40150 . - 0 ID=Physo158203;Parent=Physo158203;rank=7 scaffold_90 . CDS 40409 40422 . - 0 ID=Physo158203;Parent=Physo158203;rank=6 scaffold_90 . CDS 40488 40556 . - 0 ID=Physo158203;Parent=Physo158203;rank=5 scaffold_90 . CDS 40613 40694 . - 0 ID=Physo158203;Parent=Physo158203;rank=4 scaffold_90 . CDS 40767 40825 . - 0 ID=Physo158203;Parent=Physo158203;rank=3 scaffold_90 . CDS 40919 41619 . - 0 ID=Physo158203;Parent=Physo158203;rank=2 scaffold_90 . CDS 41699 41823 . - 0 ID=Physo158203;Parent=Physo158203;rank=1 scaffold_90 . biological_region 40952 40955 0.999 + . logic_name=eponine scaffold_90 . repeat_region 43294 43302 . ? . description=dust scaffold_90 . repeat_region 46411 46418 . ? . description=dust scaffold_90 . repeat_region 48244 48275 . ? . description=dust scaffold_90 . repeat_region 48244 48276 . ? . description=trf scaffold_90 . biological_region 48712 48713 0.999 + . logic_name=eponine scaffold_90 . biological_region 48740 48746 0.999 + . logic_name=eponine scaffold_90 . biological_region 48769 48772 0.999 + . logic_name=eponine scaffold_90 . biological_region 48829 48838 0.999 - . logic_name=eponine scaffold_90 . biological_region 48854 48864 0.999 - . logic_name=eponine scaffold_90 . biological_region 49244 49245 0.999 + . logic_name=eponine scaffold_90 . biological_region 49326 49331 0.999 - . logic_name=eponine scaffold_90 . biological_region 49348 49350 0.999 + . logic_name=eponine scaffold_90 . biological_region 49371 49373 0.999 + . logic_name=eponine scaffold_90 . biological_region 49407 49407 0.999 + . logic_name=eponine scaffold_90 . biological_region 49417 49425 0.999 + . logic_name=eponine scaffold_90 . biological_region 49501 49505 0.999 + . logic_name=eponine scaffold_90 ensembl protein_coding_gene 49187 51174 . + . ID=Physo109316;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_900002;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 49187 51174 . + . ID=Physo109316;Parent=Physo109316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 49187 51037 . + 0 ID=Physo109316;Parent=Physo109316;rank=1 scaffold_90 . exon 49187 51174 . + . ID=Physo109316.1;Parent=Physo109316;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 44359 46256 . - . ID=Physo140805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900010;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 44359 46256 . - . ID=Physo140805;Parent=Physo140805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 44359 45536 . - 0 ID=Physo140805;Parent=Physo140805;rank=3 scaffold_90 . exon 44359 45536 . - . ID=Physo140805.3;Parent=Physo140805;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 45568 45853 . - 0 ID=Physo140805;Parent=Physo140805;rank=2 scaffold_90 . exon 45568 45853 . - . ID=Physo140805.2;Parent=Physo140805;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_90 . CDS 45879 46256 . - 0 ID=Physo140805;Parent=Physo140805;rank=1 scaffold_90 . exon 45879 46256 . - . ID=Physo140805.1;Parent=Physo140805;constitutive=1;rank=1 scaffold_90 . exon 39790 40026 . - . ID=Physo158203.8;Parent=Physo158203;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_90 . exon 40132 40150 . - . ID=Physo158203.7;Parent=Physo158203;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_90 . exon 40409 40422 . - . ID=Physo158203.6;Parent=Physo158203;constitutive=1;ensembl_phase=1;rank=6 scaffold_90 . exon 40488 40556 . - . ID=Physo158203.5;Parent=Physo158203;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_90 . exon 40613 40694 . - . ID=Physo158203.4;Parent=Physo158203;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_90 . exon 40767 40825 . - . ID=Physo158203.3;Parent=Physo158203;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 . exon 40919 41619 . - . ID=Physo158203.2;Parent=Physo158203;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_90 . exon 41699 41823 . - . ID=Physo158203.1;Parent=Physo158203;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 ensembl protein_coding_gene 51353 58117 . - . ID=Physo140807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900012;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 51353 58117 . - . ID=Physo140807;Parent=Physo140807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 51353 58117 . - 0 ID=Physo140807;Parent=Physo140807;rank=1 scaffold_90 . exon 51353 58117 . - . ID=Physo140807.1;Parent=Physo140807;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 58514 59068 . + . ID=Physo140808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900013;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 58514 59068 . + . ID=Physo140808;Parent=Physo140808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 58514 59068 . + 0 ID=Physo140808;Parent=Physo140808;rank=1 scaffold_90 . exon 58514 59068 . + . ID=Physo140808.1;Parent=Physo140808;constitutive=1;rank=1 scaffold_90 . repeat_region 59428 59437 . ? . description=dust scaffold_90 . repeat_region 62398 62418 . ? . description=trf scaffold_90 . repeat_region 64595 64693 . ? . description=trf scaffold_90 . biological_region 65581 65583 0.999 + . logic_name=eponine scaffold_90 ensembl protein_coding_gene 66468 67259 . - . ID=Physo109318;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_900004;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 66468 67259 . - . ID=Physo109318;Parent=Physo109318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 66468 67259 . - 0 ID=Physo109318;Parent=Physo109318;rank=1 scaffold_90 . exon 66468 67259 . - . ID=Physo109318.1;Parent=Physo109318;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 59494 60315 . + . ID=Physo121286;biotype=protein_coding;external_name=estExt_Genewise1.C_900029;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 59494 60315 . + . ID=Physo121286;Parent=Physo121286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 59494 59966 . + 0 ID=Physo121286;Parent=Physo121286;rank=1 scaffold_90 . exon 59494 59966 . + . ID=Physo121286.1;Parent=Physo121286;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 60278 60284 . + 0 ID=Physo121286;Parent=Physo121286;rank=2 scaffold_90 . exon 60278 60315 . + . ID=Physo121286.2;Parent=Physo121286;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_90 ensembl protein_coding_gene 61060 62255 . - . ID=Physo140810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900015;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 61060 62255 . - . ID=Physo140810;Parent=Physo140810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . exon 61060 61559 . - . ID=Physo140810.3;Parent=Physo140810;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_90 . CDS 61229 61559 . - 0 ID=Physo140810;Parent=Physo140810;rank=3 scaffold_90 . CDS 61622 61783 . - 0 ID=Physo140810;Parent=Physo140810;rank=2 scaffold_90 . exon 61622 61783 . - . ID=Physo140810.2;Parent=Physo140810;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_90 . CDS 61861 62192 . - 0 ID=Physo140810;Parent=Physo140810;rank=1 scaffold_90 . exon 61861 62255 . - . ID=Physo140810.1;Parent=Physo140810;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 62540 65411 . + . ID=Physo140811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900016;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 62540 65411 . + . ID=Physo140811;Parent=Physo140811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 62540 62918 . + 0 ID=Physo140811;Parent=Physo140811;rank=1 scaffold_90 . exon 62540 62918 . + . ID=Physo140811.1;Parent=Physo140811;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 62991 63052 . + 0 ID=Physo140811;Parent=Physo140811;rank=2 scaffold_90 . exon 62991 63052 . + . ID=Physo140811.2;Parent=Physo140811;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 63227 63451 . + 0 ID=Physo140811;Parent=Physo140811;rank=3 scaffold_90 . exon 63227 63451 . + . ID=Physo140811.3;Parent=Physo140811;constitutive=1;rank=3 scaffold_90 . CDS 63526 63873 . + 0 ID=Physo140811;Parent=Physo140811;rank=4 scaffold_90 . exon 63526 63873 . + . ID=Physo140811.4;Parent=Physo140811;constitutive=1;rank=4 scaffold_90 . CDS 63939 65411 . + 0 ID=Physo140811;Parent=Physo140811;rank=5 scaffold_90 . exon 63939 65411 . + . ID=Physo140811.5;Parent=Physo140811;constitutive=1;rank=5 scaffold_90 ensembl protein_coding_gene 65496 66312 . - . ID=Physo140812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900017;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 65496 66312 . - . ID=Physo140812;Parent=Physo140812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 65496 65747 . - 0 ID=Physo140812;Parent=Physo140812;rank=3 scaffold_90 . exon 65496 65747 . - . ID=Physo140812.3;Parent=Physo140812;constitutive=1;rank=3 scaffold_90 . CDS 65815 65900 . - 0 ID=Physo140812;Parent=Physo140812;rank=2 scaffold_90 . exon 65815 65900 . - . ID=Physo140812.2;Parent=Physo140812;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 65970 66312 . - 0 ID=Physo140812;Parent=Physo140812;rank=1 scaffold_90 . exon 65970 66312 . - . ID=Physo140812.1;Parent=Physo140812;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 68996 69442 . - . ID=Physo140814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900019;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 68996 69442 . - . ID=Physo140814;Parent=Physo140814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 68996 69442 . - 0 ID=Physo140814;Parent=Physo140814;rank=1 scaffold_90 . exon 68996 69442 . - . ID=Physo140814.1;Parent=Physo140814;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 76100 77367 . - . ID=Physo109319;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_900005;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 76100 77367 . - . ID=Physo109319;Parent=Physo109319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 76100 77350 . - 0 ID=Physo109319;Parent=Physo109319;rank=1 scaffold_90 . exon 76100 77367 . - . ID=Physo109319.1;Parent=Physo109319;constitutive=1;ensembl_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 73231 75920 . + . ID=Physo140815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900020;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 73231 75920 . + . ID=Physo140815;Parent=Physo140815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 73231 73460 . + 0 ID=Physo140815;Parent=Physo140815;rank=1 scaffold_90 . exon 73231 73460 . + . ID=Physo140815.1;Parent=Physo140815;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 73541 75920 . + 0 ID=Physo140815;Parent=Physo140815;rank=2 scaffold_90 . exon 73541 75920 . + . ID=Physo140815.2;Parent=Physo140815;constitutive=1;ensembl_phase=2;rank=2 scaffold_90 . biological_region 81270 81272 0.999 + . logic_name=eponine scaffold_90 . biological_region 81278 81281 0.999 + . logic_name=eponine scaffold_90 . biological_region 81359 81362 0.999 - . logic_name=eponine scaffold_90 . biological_region 81645 81650 0.999 - . logic_name=eponine scaffold_90 . biological_region 81751 81751 0.999 + . logic_name=eponine scaffold_90 . biological_region 81818 81820 0.999 - . logic_name=eponine scaffold_90 . biological_region 81892 81893 0.999 + . logic_name=eponine scaffold_90 . biological_region 82051 82053 0.999 - . logic_name=eponine scaffold_90 . biological_region 82344 82344 0.999 - . logic_name=eponine scaffold_90 . biological_region 86700 86703 0.999 + . logic_name=eponine scaffold_90 ensembl protein_coding_gene 81416 83739 . + . ID=Physo121300;biotype=protein_coding;external_name=estExt_Genewise1.C_900043;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 81416 83739 . + . ID=Physo121300;Parent=Physo121300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . exon 81416 83371 . + . ID=Physo121300.1;Parent=Physo121300;constitutive=1;ensembl_phase=-1;rank=1 scaffold_90 . CDS 81572 83371 . + 0 ID=Physo121300;Parent=Physo121300;rank=1 scaffold_90 . CDS 83440 83739 . + 0 ID=Physo121300;Parent=Physo121300;rank=2 scaffold_90 . exon 83440 83739 . + . ID=Physo121300.2;Parent=Physo121300;constitutive=1;rank=2 scaffold_90 ensembl protein_coding_gene 84213 85191 . + . ID=Physo140818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900023;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 84213 85191 . + . ID=Physo140818;Parent=Physo140818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 84213 84864 . + 0 ID=Physo140818;Parent=Physo140818;rank=1 scaffold_90 . exon 84213 84864 . + . ID=Physo140818.1;Parent=Physo140818;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 85001 85128 . + 0 ID=Physo140818;Parent=Physo140818;rank=2 scaffold_90 . exon 85001 85128 . + . ID=Physo140818.2;Parent=Physo140818;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 85174 85191 . + 0 ID=Physo140818;Parent=Physo140818;rank=3 scaffold_90 . exon 85174 85191 . + . ID=Physo140818.3;Parent=Physo140818;constitutive=1;rank=3 scaffold_90 ensembl protein_coding_gene 85741 88690 . - . ID=Physo140819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900024;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 85741 88690 . - . ID=Physo140819;Parent=Physo140819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 85741 87710 . - 0 ID=Physo140819;Parent=Physo140819;rank=4 scaffold_90 . exon 85741 87710 . - . ID=Physo140819.4;Parent=Physo140819;constitutive=1;ensembl_phase=1;rank=4 scaffold_90 . CDS 87783 88143 . - 0 ID=Physo140819;Parent=Physo140819;rank=3 scaffold_90 . exon 87783 88143 . - . ID=Physo140819.3;Parent=Physo140819;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_90 . CDS 88215 88412 . - 0 ID=Physo140819;Parent=Physo140819;rank=2 scaffold_90 . exon 88215 88412 . - . ID=Physo140819.2;Parent=Physo140819;constitutive=1;rank=2 scaffold_90 . CDS 88478 88690 . - 0 ID=Physo140819;Parent=Physo140819;rank=1 scaffold_90 . exon 88478 88690 . - . ID=Physo140819.1;Parent=Physo140819;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 91139 92659 . + . ID=Physo140820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900025;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 91139 92659 . + . ID=Physo140820;Parent=Physo140820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 91139 92659 . + 0 ID=Physo140820;Parent=Physo140820;rank=1 scaffold_90 . exon 91139 92659 . + . ID=Physo140820.1;Parent=Physo140820;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 93209 93725 . - . ID=Physo140821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900026;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 93209 93725 . - . ID=Physo140821;Parent=Physo140821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 93209 93226 . - 0 ID=Physo140821;Parent=Physo140821;rank=3 scaffold_90 . exon 93209 93226 . - . ID=Physo140821.3;Parent=Physo140821;constitutive=1;rank=3 scaffold_90 . CDS 93272 93399 . - 0 ID=Physo140821;Parent=Physo140821;rank=2 scaffold_90 . exon 93272 93399 . - . ID=Physo140821.2;Parent=Physo140821;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 93536 93725 . - 0 ID=Physo140821;Parent=Physo140821;rank=1 scaffold_90 . exon 93536 93725 . - . ID=Physo140821.1;Parent=Physo140821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 94146 95480 . + . ID=Physo140822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900027;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 94146 95480 . + . ID=Physo140822;Parent=Physo140822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 94146 95171 . + 0 ID=Physo140822;Parent=Physo140822;rank=1 scaffold_90 . exon 94146 95171 . + . ID=Physo140822.1;Parent=Physo140822;constitutive=1;rank=1 scaffold_90 . CDS 95268 95480 . + 0 ID=Physo140822;Parent=Physo140822;rank=2 scaffold_90 . exon 95268 95480 . + . ID=Physo140822.2;Parent=Physo140822;constitutive=1;rank=2 scaffold_90 ensembl protein_coding_gene 97204 99126 . + . ID=Physo140823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900028;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 97204 99126 . + . ID=Physo140823;Parent=Physo140823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 97204 99126 . + 0 ID=Physo140823;Parent=Physo140823;rank=1 scaffold_90 . exon 97204 99126 . + . ID=Physo140823.1;Parent=Physo140823;constitutive=1;rank=1 scaffold_90 . repeat_region 99906 99913 . ? . description=dust scaffold_90 . repeat_region 100348 101316 . ? . description=trf scaffold_90 . biological_region 100435 100441 0.999 + . logic_name=eponine scaffold_90 . biological_region 100494 100501 0.999 - . logic_name=eponine scaffold_90 . biological_region 100549 100555 0.999 + . logic_name=eponine scaffold_90 . biological_region 100608 100615 0.999 - . logic_name=eponine scaffold_90 . biological_region 100663 100669 0.999 + . logic_name=eponine scaffold_90 . biological_region 100722 100729 0.999 - . logic_name=eponine scaffold_90 . biological_region 100777 100783 0.999 + . logic_name=eponine scaffold_90 . biological_region 100838 100843 0.999 - . logic_name=eponine scaffold_90 . biological_region 100891 100897 0.999 + . logic_name=eponine scaffold_90 . biological_region 100950 100957 0.999 - . logic_name=eponine scaffold_90 . biological_region 101005 101011 0.999 + . logic_name=eponine scaffold_90 . biological_region 101064 101071 0.999 - . logic_name=eponine scaffold_90 . biological_region 101119 101125 0.999 + . logic_name=eponine scaffold_90 . biological_region 101178 101185 0.999 - . logic_name=eponine scaffold_90 . biological_region 101235 101238 0.999 + . logic_name=eponine scaffold_90 . repeat_region 103677 103695 . ? . description=dust scaffold_90 . repeat_region 103881 103943 . ? . description=trf scaffold_90 . repeat_region 103881 103955 . ? . description=trf scaffold_90 . repeat_region 103891 103966 . ? . description=trf scaffold_90 . biological_region 104604 104606 0.999 - . logic_name=eponine scaffold_90 . biological_region 105075 105076 0.999 + . logic_name=eponine scaffold_90 . biological_region 105104 105108 0.999 - . logic_name=eponine scaffold_90 . biological_region 105125 105126 0.999 - . logic_name=eponine scaffold_90 . biological_region 105577 105578 0.999 + . logic_name=eponine scaffold_90 . biological_region 105606 105610 0.999 - . logic_name=eponine scaffold_90 . biological_region 105627 105628 0.999 - . logic_name=eponine scaffold_90 . biological_region 106108 106110 0.999 - . logic_name=eponine scaffold_90 . biological_region 106609 106611 0.999 - . logic_name=eponine scaffold_90 . biological_region 107580 107583 0.999 + . logic_name=eponine scaffold_90 . biological_region 108082 108085 0.999 + . logic_name=eponine scaffold_90 . biological_region 108614 108614 0.999 - . logic_name=eponine scaffold_90 . biological_region 108634 108635 0.999 - . logic_name=eponine scaffold_90 ensembl protein_coding_gene 100191 101389 . + . ID=Physo140824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900029;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 100191 101389 . + . ID=Physo140824;Parent=Physo140824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 100191 101322 . + 0 ID=Physo140824;Parent=Physo140824;rank=1 scaffold_90 . exon 100191 101322 . + . ID=Physo140824.1;Parent=Physo140824;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 101370 101389 . + 0 ID=Physo140824;Parent=Physo140824;rank=2 scaffold_90 . exon 101370 101389 . + . ID=Physo140824.2;Parent=Physo140824;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 ensembl protein_coding_gene 103579 110074 . - . ID=Physo140825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900030;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 103579 110074 . - . ID=Physo140825;Parent=Physo140825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . exon 103579 104166 . - . ID=Physo140825.8;Parent=Physo140825;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=8 scaffold_90 . CDS 103767 104166 . - 0 ID=Physo140825;Parent=Physo140825;rank=8 scaffold_90 . CDS 104206 104919 . - 0 ID=Physo140825;Parent=Physo140825;rank=7 scaffold_90 . exon 104206 104919 . - . ID=Physo140825.7;Parent=Physo140825;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_90 . CDS 105146 105158 . - 0 ID=Physo140825;Parent=Physo140825;rank=6 scaffold_90 . exon 105146 105158 . - . ID=Physo140825.6;Parent=Physo140825;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_90 . CDS 105312 107301 . - 0 ID=Physo140825;Parent=Physo140825;rank=5 scaffold_90 . exon 105312 107301 . - . ID=Physo140825.5;Parent=Physo140825;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_90 . CDS 107379 107801 . - 0 ID=Physo140825;Parent=Physo140825;rank=4 scaffold_90 . exon 107379 107801 . - . ID=Physo140825.4;Parent=Physo140825;constitutive=1;rank=4 scaffold_90 . CDS 107986 108818 . - 0 ID=Physo140825;Parent=Physo140825;rank=3 scaffold_90 . exon 107986 108818 . - . ID=Physo140825.3;Parent=Physo140825;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 108883 109859 . - 0 ID=Physo140825;Parent=Physo140825;rank=2 scaffold_90 . exon 108883 109859 . - . ID=Physo140825.2;Parent=Physo140825;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 109899 110074 . - 0 ID=Physo140825;Parent=Physo140825;rank=1 scaffold_90 . repeat_region 118574 120933 . - . description=GypsyPi-1c_I-int scaffold_90 . exon 109899 110074 . - . ID=Physo140825.1;Parent=Physo140825;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 ensembl protein_coding_gene 111233 112266 . - . ID=Physo140826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900031;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 111233 112266 . - . ID=Physo140826;Parent=Physo140826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . exon 111233 111246 . - . ID=Physo140826.7;Parent=Physo140826;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_90 . CDS 111235 111246 . - 0 ID=Physo140826;Parent=Physo140826;rank=7 scaffold_90 . CDS 111308 111379 . - 0 ID=Physo140826;Parent=Physo140826;rank=6 scaffold_90 . exon 111308 111379 . - . ID=Physo140826.6;Parent=Physo140826;constitutive=1;rank=6 scaffold_90 . CDS 111444 111590 . - 0 ID=Physo140826;Parent=Physo140826;rank=5 scaffold_90 . exon 111444 111590 . - . ID=Physo140826.5;Parent=Physo140826;constitutive=1;rank=5 scaffold_90 . CDS 111664 111759 . - 0 ID=Physo140826;Parent=Physo140826;rank=4 scaffold_90 . exon 111664 111759 . - . ID=Physo140826.4;Parent=Physo140826;constitutive=1;rank=4 scaffold_90 . CDS 111834 111920 . - 0 ID=Physo140826;Parent=Physo140826;rank=3 scaffold_90 . exon 111834 111920 . - . ID=Physo140826.3;Parent=Physo140826;constitutive=1;rank=3 scaffold_90 . CDS 112007 112090 . - 0 ID=Physo140826;Parent=Physo140826;rank=2 scaffold_90 . exon 112007 112090 . - . ID=Physo140826.2;Parent=Physo140826;constitutive=1;rank=2 scaffold_90 . CDS 112161 112253 . - 0 ID=Physo140826;Parent=Physo140826;rank=1 scaffold_90 . exon 112161 112266 . - . ID=Physo140826.1;Parent=Physo140826;constitutive=1;ensembl_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 112486 113175 . + . ID=Physo140827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900032;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 112486 113175 . + . ID=Physo140827;Parent=Physo140827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 112486 113175 . + 0 ID=Physo140827;Parent=Physo140827;rank=1 scaffold_90 . exon 112486 113175 . + . ID=Physo140827.1;Parent=Physo140827;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 113585 114130 . - . ID=Physo140828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900033;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 113585 114130 . - . ID=Physo140828;Parent=Physo140828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 113585 114130 . - 0 ID=Physo140828;Parent=Physo140828;rank=1 scaffold_90 . exon 113585 114130 . - . ID=Physo140828.1;Parent=Physo140828;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 116924 117337 . + . ID=Physo140829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900034;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 116924 117337 . + . ID=Physo140829;Parent=Physo140829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 116924 117337 . + 0 ID=Physo140829;Parent=Physo140829;rank=1 scaffold_90 . exon 116924 117337 . + . ID=Physo140829.1;Parent=Physo140829;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 118113 123333 . - . ID=Physo140830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900035;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 118113 123333 . - . ID=Physo140830;Parent=Physo140830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 118113 119198 . - 0 ID=Physo140830;Parent=Physo140830;rank=6 scaffold_90 . exon 118113 119198 . - . ID=Physo140830.6;Parent=Physo140830;constitutive=1;rank=6 scaffold_90 . CDS 119249 119891 . - 0 ID=Physo140830;Parent=Physo140830;rank=5 scaffold_90 . CDS 120189 120547 . - 0 ID=Physo140830;Parent=Physo140830;rank=4 scaffold_90 . CDS 120615 121982 . - 0 ID=Physo140830;Parent=Physo140830;rank=3 scaffold_90 . CDS 122036 122250 . - 0 ID=Physo140830;Parent=Physo140830;rank=2 scaffold_90 . CDS 122832 123333 . - 0 ID=Physo140830;Parent=Physo140830;rank=1 scaffold_90 . biological_region 120768 120769 0.999 - . logic_name=eponine scaffold_90 . biological_region 121251 121253 0.999 - . logic_name=eponine scaffold_90 . biological_region 121466 121470 0.999 + . logic_name=eponine scaffold_90 . biological_region 121528 121531 0.999 - . logic_name=eponine scaffold_90 . biological_region 125957 125963 0.999 - . logic_name=eponine scaffold_90 . repeat_region 128680 129057 . + . description=Gypsy-2-I_PI-int scaffold_90 . exon 119249 119891 . - . ID=Physo140830.5;Parent=Physo140830;constitutive=1;ensembl_phase=2;rank=5 scaffold_90 . exon 120189 120547 . - . ID=Physo140830.4;Parent=Physo140830;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_90 . exon 120615 121982 . - . ID=Physo140830.3;Parent=Physo140830;constitutive=1;rank=3 scaffold_90 . exon 122036 122250 . - . ID=Physo140830.2;Parent=Physo140830;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . exon 122832 123333 . - . ID=Physo140830.1;Parent=Physo140830;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 124250 127593 . + . ID=Physo140831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900036;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 124250 127593 . + . ID=Physo140831;Parent=Physo140831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 124250 124789 . + 0 ID=Physo140831;Parent=Physo140831;rank=1 scaffold_90 . exon 124250 124789 . + . ID=Physo140831.1;Parent=Physo140831;constitutive=1;rank=1 scaffold_90 . CDS 124863 125215 . + 0 ID=Physo140831;Parent=Physo140831;rank=2 scaffold_90 . exon 124863 125215 . + . ID=Physo140831.2;Parent=Physo140831;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_90 . CDS 125637 125716 . + 0 ID=Physo140831;Parent=Physo140831;rank=3 scaffold_90 . exon 125637 125716 . + . ID=Physo140831.3;Parent=Physo140831;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_90 . CDS 125874 126138 . + 0 ID=Physo140831;Parent=Physo140831;rank=4 scaffold_90 . exon 125874 126138 . + . ID=Physo140831.4;Parent=Physo140831;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_90 . CDS 126705 127593 . + 0 ID=Physo140831;Parent=Physo140831;rank=5 scaffold_90 . exon 126705 127593 . + . ID=Physo140831.5;Parent=Physo140831;constitutive=1;ensembl_phase=2;rank=5 scaffold_90 . repeat_region 133717 133774 . ? . description=trf scaffold_90 . repeat_region 135279 135288 . ? . description=dust scaffold_90 . repeat_region 135871 135882 . ? . description=dust scaffold_90 . repeat_region 136506 136597 . ? . description=dust scaffold_90 . repeat_region 136713 136741 . ? . description=trf scaffold_90 . repeat_region 136836 136994 . ? . description=trf scaffold_90 . repeat_region 137044 137058 . ? . description=dust scaffold_90 . repeat_region 137519 137567 . ? . description=trf scaffold_90 ensembl protein_coding_gene 138042 147303 . - . ID=Physo140832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900037;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 138042 147303 . - . ID=Physo140832;Parent=Physo140832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 138042 138800 . - 0 ID=Physo140832;Parent=Physo140832;rank=10 scaffold_90 . exon 138042 138800 . - . ID=Physo140832.10;Parent=Physo140832;constitutive=1;rank=10 scaffold_90 . CDS 138957 139232 . - 0 ID=Physo140832;Parent=Physo140832;rank=9 scaffold_90 . CDS 139269 139934 . - 0 ID=Physo140832;Parent=Physo140832;rank=8 scaffold_90 . CDS 140070 140907 . - 0 ID=Physo140832;Parent=Physo140832;rank=7 scaffold_90 . CDS 141018 141469 . - 0 ID=Physo140832;Parent=Physo140832;rank=6 scaffold_90 . CDS 141536 142948 . - 0 ID=Physo140832;Parent=Physo140832;rank=5 scaffold_90 . CDS 143137 144675 . - 0 ID=Physo140832;Parent=Physo140832;rank=4 scaffold_90 . CDS 144916 146053 . - 0 ID=Physo140832;Parent=Physo140832;rank=3 scaffold_90 . CDS 146796 147101 . - 0 ID=Physo140832;Parent=Physo140832;rank=2 scaffold_90 . CDS 147131 147303 . - 0 ID=Physo140832;Parent=Physo140832;rank=1 scaffold_90 . exon 138957 139232 . - . ID=Physo140832.9;Parent=Physo140832;constitutive=1;rank=9 scaffold_90 . exon 139269 139934 . - . ID=Physo140832.8;Parent=Physo140832;constitutive=1;rank=8 scaffold_90 . exon 140070 140907 . - . ID=Physo140832.7;Parent=Physo140832;constitutive=1;ensembl_phase=2;rank=7 scaffold_90 . exon 141018 141469 . - . ID=Physo140832.6;Parent=Physo140832;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_90 . exon 141536 142948 . - . ID=Physo140832.5;Parent=Physo140832;constitutive=1;rank=5 scaffold_90 . exon 143137 144675 . - . ID=Physo140832.4;Parent=Physo140832;constitutive=1;rank=4 scaffold_90 . exon 144916 146053 . - . ID=Physo140832.3;Parent=Physo140832;constitutive=1;ensembl_phase=2;rank=3 scaffold_90 . exon 146796 147101 . - . ID=Physo140832.2;Parent=Physo140832;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_90 . exon 147131 147303 . - . ID=Physo140832.1;Parent=Physo140832;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . repeat_region 148760 148774 . ? . description=dust scaffold_90 . repeat_region 149235 149283 . ? . description=trf scaffold_90 . repeat_region 151664 151672 . ? . description=dust scaffold_90 . repeat_region 152935 152968 . ? . description=trf scaffold_90 . biological_region 154822 154827 0.999 + . logic_name=eponine scaffold_90 . repeat_region 154983 154990 . ? . description=dust scaffold_90 . biological_region 155366 155370 0.999 + . logic_name=eponine scaffold_90 . biological_region 155768 155771 0.999 - . logic_name=eponine scaffold_90 . biological_region 155992 155995 0.999 + . logic_name=eponine scaffold_90 . biological_region 156348 156351 0.999 - . logic_name=eponine scaffold_90 . repeat_region 156618 156667 . ? . description=dust scaffold_90 . biological_region 156932 156935 0.999 + . logic_name=eponine scaffold_90 . biological_region 157288 157291 0.999 - . logic_name=eponine scaffold_90 . biological_region 157512 157515 0.999 + . logic_name=eponine scaffold_90 ensembl protein_coding_gene 153652 154341 . - . ID=Physo140833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900038;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 153652 154341 . - . ID=Physo140833;Parent=Physo140833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 153652 154142 . - 0 ID=Physo140833;Parent=Physo140833;rank=2 scaffold_90 . exon 153652 154142 . - . ID=Physo140833.2;Parent=Physo140833;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 154179 154341 . - 0 ID=Physo140833;Parent=Physo140833;rank=1 scaffold_90 . exon 154179 154341 . - . ID=Physo140833.1;Parent=Physo140833;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 157543 158390 . + . ID=Physo140834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900039;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 157543 158390 . + . ID=Physo140834;Parent=Physo140834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 157543 157797 . + 0 ID=Physo140834;Parent=Physo140834;rank=1 scaffold_90 . exon 157543 157797 . + . ID=Physo140834.1;Parent=Physo140834;constitutive=1;rank=1 scaffold_90 . CDS 158183 158222 . + 0 ID=Physo140834;Parent=Physo140834;rank=2 scaffold_90 . exon 158183 158222 . + . ID=Physo140834.2;Parent=Physo140834;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_90 . CDS 158275 158390 . + 0 ID=Physo140834;Parent=Physo140834;rank=3 scaffold_90 . exon 158275 158390 . + . ID=Physo140834.3;Parent=Physo140834;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 ensembl protein_coding_gene 159570 160201 . + . ID=Physo140835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900040;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 159570 160201 . + . ID=Physo140835;Parent=Physo140835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 159570 159876 . + 0 ID=Physo140835;Parent=Physo140835;rank=1 scaffold_90 . exon 159570 159876 . + . ID=Physo140835.1;Parent=Physo140835;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 159954 160201 . + 0 ID=Physo140835;Parent=Physo140835;rank=2 scaffold_90 . exon 159954 160201 . + . ID=Physo140835.2;Parent=Physo140835;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 ensembl protein_coding_gene 166432 168145 . + . ID=Physo140836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900041;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 166432 168145 . + . ID=Physo140836;Parent=Physo140836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 166432 166455 . + 0 ID=Physo140836;Parent=Physo140836;rank=1 scaffold_90 . exon 166432 166455 . + . ID=Physo140836.1;Parent=Physo140836;constitutive=1;rank=1 scaffold_90 . CDS 166661 167316 . + 0 ID=Physo140836;Parent=Physo140836;rank=2 scaffold_90 . exon 166661 167316 . + . ID=Physo140836.2;Parent=Physo140836;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_90 . CDS 167431 168145 . + 0 ID=Physo140836;Parent=Physo140836;rank=3 scaffold_90 . exon 167431 168145 . + . ID=Physo140836.3;Parent=Physo140836;constitutive=1;ensembl_phase=2;rank=3 scaffold_90 . repeat_region 171103 171111 . ? . description=dust scaffold_90 . biological_region 174671 174675 0.999 - . logic_name=eponine scaffold_90 . repeat_region 179511 179533 . ? . description=trf scaffold_90 . repeat_region 180930 180959 . ? . description=trf scaffold_90 ensembl protein_coding_gene 184699 185102 . + . ID=Physo140837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900042;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 184699 185102 . + . ID=Physo140837;Parent=Physo140837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 184699 184733 . + 0 ID=Physo140837;Parent=Physo140837;rank=1 scaffold_90 . exon 184699 184733 . + . ID=Physo140837.1;Parent=Physo140837;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 184769 184799 . + 0 ID=Physo140837;Parent=Physo140837;rank=2 scaffold_90 . exon 184769 184799 . + . ID=Physo140837.2;Parent=Physo140837;constitutive=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 184839 185102 . + 0 ID=Physo140837;Parent=Physo140837;rank=3 scaffold_90 . exon 184839 185102 . + . ID=Physo140837.3;Parent=Physo140837;constitutive=1;rank=3 scaffold_90 . biological_region 189276 189279 0.999 + . logic_name=eponine scaffold_90 . biological_region 197824 197824 0.999 - . logic_name=eponine scaffold_90 . repeat_region 202440 202480 . ? . description=trf scaffold_90 . repeat_region 206791 206835 . ? . description=dust scaffold_90 . repeat_region 206793 206832 . ? . description=trf scaffold_90 ensembl protein_coding_gene 199060 200559 . - . ID=Physo109321;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_900007;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 199060 200559 . - . ID=Physo109321;Parent=Physo109321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 199060 199103 . - 0 ID=Physo109321;Parent=Physo109321;rank=2 scaffold_90 . exon 199060 199103 . - . ID=Physo109321.2;Parent=Physo109321;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 199143 200535 . - 0 ID=Physo109321;Parent=Physo109321;rank=1 scaffold_90 . exon 199143 200559 . - . ID=Physo109321.1;Parent=Physo109321;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 201591 205880 . + . ID=Physo140839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900044;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 201591 205880 . + . ID=Physo140839;Parent=Physo140839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 201591 201695 . + 0 ID=Physo140839;Parent=Physo140839;rank=1 scaffold_90 . exon 201591 201695 . + . ID=Physo140839.1;Parent=Physo140839;constitutive=1;rank=1 scaffold_90 . CDS 201778 202052 . + 0 ID=Physo140839;Parent=Physo140839;rank=2 scaffold_90 . exon 201778 202052 . + . ID=Physo140839.2;Parent=Physo140839;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_90 . CDS 202119 202485 . + 0 ID=Physo140839;Parent=Physo140839;rank=3 scaffold_90 . exon 202119 202485 . + . ID=Physo140839.3;Parent=Physo140839;constitutive=1;ensembl_phase=2;rank=3 scaffold_90 . CDS 202622 203329 . + 0 ID=Physo140839;Parent=Physo140839;rank=4 scaffold_90 . exon 202622 203329 . + . ID=Physo140839.4;Parent=Physo140839;constitutive=1;rank=4 scaffold_90 . CDS 203844 203989 . + 0 ID=Physo140839;Parent=Physo140839;rank=5 scaffold_90 . exon 203844 203989 . + . ID=Physo140839.5;Parent=Physo140839;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_90 . CDS 204090 204988 . + 0 ID=Physo140839;Parent=Physo140839;rank=6 scaffold_90 . exon 204090 204988 . + . ID=Physo140839.6;Parent=Physo140839;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_90 . CDS 205069 205200 . + 0 ID=Physo140839;Parent=Physo140839;rank=7 scaffold_90 . exon 205069 205200 . + . ID=Physo140839.7;Parent=Physo140839;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_90 . CDS 205269 205764 . + 0 ID=Physo140839;Parent=Physo140839;rank=8 scaffold_90 . exon 205269 205764 . + . ID=Physo140839.8;Parent=Physo140839;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_90 . CDS 205847 205880 . + 0 ID=Physo140839;Parent=Physo140839;rank=9 scaffold_90 . exon 205847 205880 . + . ID=Physo140839.9;Parent=Physo140839;constitutive=1;ensembl_phase=2;rank=9 scaffold_90 ensembl protein_coding_gene 206038 210936 . - . ID=Physo140840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900045;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 206038 210936 . - . ID=Physo140840;Parent=Physo140840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 206038 210936 . - 0 ID=Physo140840;Parent=Physo140840;rank=1 scaffold_90 . exon 206038 210936 . - . ID=Physo140840.1;Parent=Physo140840;constitutive=1;rank=1 scaffold_90 . biological_region 212600 212603 0.999 + . logic_name=eponine scaffold_90 . biological_region 212616 212621 0.999 - . logic_name=eponine scaffold_90 . biological_region 212674 212676 0.999 - . logic_name=eponine scaffold_90 . biological_region 212686 212687 0.999 - . logic_name=eponine scaffold_90 . biological_region 212728 212731 0.999 + . logic_name=eponine scaffold_90 . biological_region 212745 212748 0.999 - . logic_name=eponine scaffold_90 . biological_region 214333 214333 0.999 + . logic_name=eponine scaffold_90 ensembl protein_coding_gene 214570 215583 . - . ID=Physo109322;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_900008;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 214570 215583 . - . ID=Physo109322;Parent=Physo109322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 214570 215583 . - 0 ID=Physo109322;Parent=Physo109322;rank=1 scaffold_90 . exon 214570 215583 . - . ID=Physo109322.1;Parent=Physo109322;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 212390 214494 . + . ID=Physo140841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900046;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 212390 214494 . + . ID=Physo140841;Parent=Physo140841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 212390 214492 . + 0 ID=Physo140841;Parent=Physo140841;rank=1 scaffold_90 . exon 212390 214494 . + . ID=Physo140841.1;Parent=Physo140841;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 215743 218508 . - . ID=Physo140843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900048;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 215743 218508 . - . ID=Physo140843;Parent=Physo140843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 215743 218508 . - 0 ID=Physo140843;Parent=Physo140843;rank=1 scaffold_90 . exon 215743 218508 . - . ID=Physo140843.1;Parent=Physo140843;constitutive=1;rank=1 scaffold_90 . repeat_region 221422 221457 . ? . description=trf scaffold_90 . repeat_region 222989 223019 . ? . description=trf scaffold_90 . repeat_region 222996 223022 . ? . description=trf scaffold_90 . repeat_region 223305 223392 . ? . description=dust scaffold_90 . repeat_region 223309 223334 . ? . description=trf scaffold_90 . repeat_region 223365 223392 . ? . description=trf scaffold_90 ensembl protein_coding_gene 222465 223321 . + . ID=Physo140844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900049;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 222465 223321 . + . ID=Physo140844;Parent=Physo140844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 222465 223289 . + 0 ID=Physo140844;Parent=Physo140844;rank=1 scaffold_90 . exon 222465 223321 . + . ID=Physo140844.1;Parent=Physo140844;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 224041 224702 . + . ID=Physo140845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900050;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 224041 224702 . + . ID=Physo140845;Parent=Physo140845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . exon 224041 224262 . + . ID=Physo140845.1;Parent=Physo140845;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_90 . CDS 224043 224262 . + 0 ID=Physo140845;Parent=Physo140845;rank=1 scaffold_90 . CDS 224342 224413 . + 0 ID=Physo140845;Parent=Physo140845;rank=2 scaffold_90 . exon 224342 224413 . + . ID=Physo140845.2;Parent=Physo140845;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 224438 224458 . + 0 ID=Physo140845;Parent=Physo140845;rank=3 scaffold_90 . exon 224438 224458 . + . ID=Physo140845.3;Parent=Physo140845;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 224510 224688 . + 0 ID=Physo140845;Parent=Physo140845;rank=4 scaffold_90 . exon 224510 224702 . + . ID=Physo140845.4;Parent=Physo140845;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_90 ensembl protein_coding_gene 224906 228235 . - . ID=Physo140846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900051;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 224906 228235 . - . ID=Physo140846;Parent=Physo140846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 224906 226086 . - 0 ID=Physo140846;Parent=Physo140846;rank=4 scaffold_90 . exon 224906 226086 . - . ID=Physo140846.4;Parent=Physo140846;constitutive=1;ensembl_phase=1;rank=4 scaffold_90 . CDS 226160 227275 . - 0 ID=Physo140846;Parent=Physo140846;rank=3 scaffold_90 . exon 226160 227275 . - . ID=Physo140846.3;Parent=Physo140846;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 227355 227786 . - 0 ID=Physo140846;Parent=Physo140846;rank=2 scaffold_90 . exon 227355 227786 . - . ID=Physo140846.2;Parent=Physo140846;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 227863 228235 . - 0 ID=Physo140846;Parent=Physo140846;rank=1 scaffold_90 . biological_region 227893 227896 0.999 + . logic_name=eponine scaffold_90 . biological_region 227997 228000 0.999 - . logic_name=eponine scaffold_90 . biological_region 230781 230783 0.999 + . logic_name=eponine scaffold_90 . biological_region 231436 231442 0.999 + . logic_name=eponine scaffold_90 . biological_region 231936 231939 0.999 + . logic_name=eponine scaffold_90 . biological_region 232035 232040 0.999 - . logic_name=eponine scaffold_90 . biological_region 233130 233130 0.999 + . logic_name=eponine scaffold_90 . biological_region 233161 233164 0.999 + . logic_name=eponine scaffold_90 . biological_region 233185 233186 0.999 + . logic_name=eponine scaffold_90 . biological_region 233199 233202 0.999 - . logic_name=eponine scaffold_90 . biological_region 233224 233228 0.999 - . logic_name=eponine scaffold_90 . biological_region 233271 233276 0.999 - . logic_name=eponine scaffold_90 . biological_region 233303 233307 0.999 + . logic_name=eponine scaffold_90 . biological_region 233323 233330 0.999 + . logic_name=eponine scaffold_90 . biological_region 233559 233565 0.999 - . logic_name=eponine scaffold_90 . biological_region 233562 233565 0.999 + . logic_name=eponine scaffold_90 . biological_region 234166 234175 0.999 - . logic_name=eponine scaffold_90 . biological_region 234242 234250 0.999 - . logic_name=eponine scaffold_90 . exon 227863 228235 . - . ID=Physo140846.1;Parent=Physo140846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 228532 229525 . - . ID=Physo140847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900052;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 228532 229525 . - . ID=Physo140847;Parent=Physo140847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 228532 228750 . - 0 ID=Physo140847;Parent=Physo140847;rank=5 scaffold_90 . exon 228532 228750 . - . ID=Physo140847.5;Parent=Physo140847;constitutive=1;rank=5 scaffold_90 . CDS 228824 229006 . - 0 ID=Physo140847;Parent=Physo140847;rank=4 scaffold_90 . exon 228824 229006 . - . ID=Physo140847.4;Parent=Physo140847;constitutive=1;rank=4 scaffold_90 . CDS 229200 229256 . - 0 ID=Physo140847;Parent=Physo140847;rank=3 scaffold_90 . exon 229200 229256 . - . ID=Physo140847.3;Parent=Physo140847;constitutive=1;rank=3 scaffold_90 . CDS 229324 229407 . - 0 ID=Physo140847;Parent=Physo140847;rank=2 scaffold_90 . exon 229324 229407 . - . ID=Physo140847.2;Parent=Physo140847;constitutive=1;rank=2 scaffold_90 . CDS 229523 229525 . - 0 ID=Physo140847;Parent=Physo140847;rank=1 scaffold_90 . exon 229523 229525 . - . ID=Physo140847.1;Parent=Physo140847;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 229714 231570 . + . ID=Physo140848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900053;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 229714 231570 . + . ID=Physo140848;Parent=Physo140848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 229714 231171 . + 0 ID=Physo140848;Parent=Physo140848;rank=1 scaffold_90 . exon 229714 231171 . + . ID=Physo140848.1;Parent=Physo140848;constitutive=1;rank=1 scaffold_90 . CDS 231241 231570 . + 0 ID=Physo140848;Parent=Physo140848;rank=2 scaffold_90 . exon 231241 231570 . + . ID=Physo140848.2;Parent=Physo140848;constitutive=1;rank=2 scaffold_90 ensembl protein_coding_gene 232938 235026 . + . ID=Physo140849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900054;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 232938 235026 . + . ID=Physo140849;Parent=Physo140849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 232938 233773 . + 0 ID=Physo140849;Parent=Physo140849;rank=1 scaffold_90 . exon 232938 233773 . + . ID=Physo140849.1;Parent=Physo140849;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 233884 234447 . + 0 ID=Physo140849;Parent=Physo140849;rank=2 scaffold_90 . exon 233884 234447 . + . ID=Physo140849.2;Parent=Physo140849;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_90 . CDS 234528 234969 . + 0 ID=Physo140849;Parent=Physo140849;rank=3 scaffold_90 . exon 234528 235026 . + . ID=Physo140849.3;Parent=Physo140849;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_90 ensembl protein_coding_gene 235171 236139 . - . ID=Physo140850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900055;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 235171 236139 . - . ID=Physo140850;Parent=Physo140850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 235171 236139 . - 0 ID=Physo140850;Parent=Physo140850;rank=1 scaffold_90 . exon 235171 236139 . - . ID=Physo140850.1;Parent=Physo140850;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 236564 237504 . + . ID=Physo158206;biotype=protein_coding;external_name=C_scaffold_90000004;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 236564 237504 . + . ID=Physo158206;Parent=Physo158206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 236564 236982 . + 0 ID=Physo158206;Parent=Physo158206;rank=1 scaffold_90 . exon 236564 236982 . + . ID=Physo158206.1;Parent=Physo158206;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 237063 237504 . + 0 ID=Physo158206;Parent=Physo158206;rank=2 scaffold_90 . exon 237063 237504 . + . ID=Physo158206.2;Parent=Physo158206;constitutive=1;ensembl_phase=2;rank=2 scaffold_90 . repeat_region 242281 242312 . ? . description=dust scaffold_90 . repeat_region 243268 243276 . ? . description=dust scaffold_90 . repeat_region 245160 245167 . ? . description=dust scaffold_90 . repeat_region 246700 246751 . ? . description=dust scaffold_90 . repeat_region 246721 246751 . ? . description=trf scaffold_90 ensembl protein_coding_gene 246038 247066 . - . ID=Physo109323;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_900009;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 246038 247066 . - . ID=Physo109323;Parent=Physo109323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . exon 246038 246485 . - . ID=Physo109323.3;Parent=Physo109323;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_90 . CDS 246216 246485 . - 0 ID=Physo109323;Parent=Physo109323;rank=3 scaffold_90 . CDS 246789 246857 . - 0 ID=Physo109323;Parent=Physo109323;rank=2 scaffold_90 . exon 246789 246857 . - . ID=Physo109323.2;Parent=Physo109323;constitutive=1;rank=2 scaffold_90 . CDS 246956 247030 . - 0 ID=Physo109323;Parent=Physo109323;rank=1 scaffold_90 . exon 246956 247066 . - . ID=Physo109323.1;Parent=Physo109323;constitutive=1;ensembl_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 237815 240453 . + . ID=Physo158207;biotype=protein_coding;external_name=C_scaffold_90000005;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 237815 240453 . + . ID=Physo158207;Parent=Physo158207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 237815 237960 . + 0 ID=Physo158207;Parent=Physo158207;rank=1 scaffold_90 . exon 237815 237960 . + . ID=Physo158207.1;Parent=Physo158207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 238039 238119 . + 0 ID=Physo158207;Parent=Physo158207;rank=2 scaffold_90 . exon 238039 238119 . + . ID=Physo158207.2;Parent=Physo158207;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_90 . CDS 238212 238359 . + 0 ID=Physo158207;Parent=Physo158207;rank=3 scaffold_90 . exon 238212 238359 . + . ID=Physo158207.3;Parent=Physo158207;constitutive=1;ensembl_phase=2;rank=3 scaffold_90 . CDS 238427 238555 . + 0 ID=Physo158207;Parent=Physo158207;rank=4 scaffold_90 . exon 238427 238555 . + . ID=Physo158207.4;Parent=Physo158207;constitutive=1;rank=4 scaffold_90 . CDS 238630 238674 . + 0 ID=Physo158207;Parent=Physo158207;rank=5 scaffold_90 . exon 238630 238674 . + . ID=Physo158207.5;Parent=Physo158207;constitutive=1;rank=5 scaffold_90 . CDS 238749 238878 . + 0 ID=Physo158207;Parent=Physo158207;rank=6 scaffold_90 . exon 238749 238878 . + . ID=Physo158207.6;Parent=Physo158207;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_90 . CDS 238942 239161 . + 0 ID=Physo158207;Parent=Physo158207;rank=7 scaffold_90 . exon 238942 239161 . + . ID=Physo158207.7;Parent=Physo158207;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_90 . CDS 239227 239283 . + 0 ID=Physo158207;Parent=Physo158207;rank=8 scaffold_90 . exon 239227 239283 . + . ID=Physo158207.8;Parent=Physo158207;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_90 . CDS 239367 239535 . + 0 ID=Physo158207;Parent=Physo158207;rank=9 scaffold_90 . exon 239367 239535 . + . ID=Physo158207.9;Parent=Physo158207;constitutive=1;ensembl_phase=2;rank=9 scaffold_90 . CDS 239717 239737 . + 0 ID=Physo158207;Parent=Physo158207;rank=10 scaffold_90 . exon 239717 239737 . + . ID=Physo158207.10;Parent=Physo158207;constitutive=1;rank=10 scaffold_90 . CDS 239827 239871 . + 0 ID=Physo158207;Parent=Physo158207;rank=11 scaffold_90 . exon 239827 239871 . + . ID=Physo158207.11;Parent=Physo158207;constitutive=1;rank=11 scaffold_90 . CDS 239945 240043 . + 0 ID=Physo158207;Parent=Physo158207;rank=12 scaffold_90 . exon 239945 240043 . + . ID=Physo158207.12;Parent=Physo158207;constitutive=1;rank=12 scaffold_90 . CDS 240115 240253 . + 0 ID=Physo158207;Parent=Physo158207;rank=13 scaffold_90 . exon 240115 240253 . + . ID=Physo158207.13;Parent=Physo158207;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_90 . CDS 240275 240453 . + 0 ID=Physo158207;Parent=Physo158207;rank=14 scaffold_90 . exon 240275 240453 . + . ID=Physo158207.14;Parent=Physo158207;constitutive=1;ensembl_phase=1;rank=14 scaffold_90 ensembl protein_coding_gene 240607 242335 . - . ID=Physo158209;biotype=protein_coding;description=7 transmebrane protein Gpr7 [Source:UniProtKB/TrEMBL%3BAcc:B6VCW9];external_name=C_scaffold_90000007;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 240607 242335 . - . ID=Physo158209;Parent=Physo158209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 240607 240786 . - 0 ID=Physo158209;Parent=Physo158209;rank=4 scaffold_90 . exon 240607 240786 . - . ID=Physo158209.4;Parent=Physo158209;constitutive=1;rank=4 scaffold_90 . CDS 240861 241388 . - 0 ID=Physo158209;Parent=Physo158209;rank=3 scaffold_90 . exon 240861 241388 . - . ID=Physo158209.3;Parent=Physo158209;constitutive=1;rank=3 scaffold_90 . CDS 241474 242085 . - 0 ID=Physo158209;Parent=Physo158209;rank=2 scaffold_90 . exon 241474 242085 . - . ID=Physo158209.2;Parent=Physo158209;constitutive=1;rank=2 scaffold_90 . CDS 242156 242335 . - 0 ID=Physo158209;Parent=Physo158209;rank=1 scaffold_90 . exon 242156 242335 . - . ID=Physo158209.1;Parent=Physo158209;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 242514 244288 . + . ID=Physo158210;biotype=protein_coding;external_name=C_scaffold_90000008;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 242514 244288 . + . ID=Physo158210;Parent=Physo158210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 242514 243211 . + 0 ID=Physo158210;Parent=Physo158210;rank=1 scaffold_90 . exon 242514 243211 . + . ID=Physo158210.1;Parent=Physo158210;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . CDS 243286 243407 . + 0 ID=Physo158210;Parent=Physo158210;rank=2 scaffold_90 . exon 243286 243407 . + . ID=Physo158210.2;Parent=Physo158210;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 243481 243728 . + 0 ID=Physo158210;Parent=Physo158210;rank=3 scaffold_90 . exon 243481 243728 . + . ID=Physo158210.3;Parent=Physo158210;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 243943 244034 . + 0 ID=Physo158210;Parent=Physo158210;rank=4 scaffold_90 . exon 243943 244034 . + . ID=Physo158210.4;Parent=Physo158210;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_90 . CDS 244138 244288 . + 0 ID=Physo158210;Parent=Physo158210;rank=5 scaffold_90 . exon 244138 244288 . + . ID=Physo158210.5;Parent=Physo158210;constitutive=1;ensembl_phase=2;rank=5 scaffold_90 . biological_region 249044 249044 0.999 - . logic_name=eponine scaffold_90 . biological_region 250097 250101 0.999 + . logic_name=eponine scaffold_90 . biological_region 250129 250136 0.999 - . logic_name=eponine scaffold_90 . biological_region 251608 251609 0.999 + . logic_name=eponine scaffold_90 . biological_region 251665 251666 0.999 + . logic_name=eponine scaffold_90 . biological_region 257008 257011 0.999 + . logic_name=eponine scaffold_90 . biological_region 257079 257082 0.999 - . logic_name=eponine scaffold_90 ensembl protein_coding_gene 247591 249468 . - . ID=Physo121330;biotype=protein_coding;external_name=estExt_Genewise1.C_900073;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 247591 249468 . - . ID=Physo121330;Parent=Physo121330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 247591 249297 . - 0 ID=Physo121330;Parent=Physo121330;rank=1 scaffold_90 . exon 247591 249468 . - . ID=Physo121330.1;Parent=Physo121330;constitutive=1;ensembl_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 250390 254206 . - . ID=Physo140857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900062;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 250390 254206 . - . ID=Physo140857;Parent=Physo140857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 250390 250434 . - 0 ID=Physo140857;Parent=Physo140857;rank=6 scaffold_90 . exon 250390 250434 . - . ID=Physo140857.6;Parent=Physo140857;constitutive=1;rank=6 scaffold_90 . CDS 250532 250674 . - 0 ID=Physo140857;Parent=Physo140857;rank=5 scaffold_90 . exon 250532 250674 . - . ID=Physo140857.5;Parent=Physo140857;constitutive=1;ensembl_phase=1;rank=5 scaffold_90 . CDS 250741 250897 . - 0 ID=Physo140857;Parent=Physo140857;rank=4 scaffold_90 . exon 250741 250897 . - . ID=Physo140857.4;Parent=Physo140857;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_90 . CDS 251169 251258 . - 0 ID=Physo140857;Parent=Physo140857;rank=3 scaffold_90 . exon 251169 251258 . - . ID=Physo140857.3;Parent=Physo140857;constitutive=1;rank=3 scaffold_90 . CDS 251456 254045 . - 0 ID=Physo140857;Parent=Physo140857;rank=2 scaffold_90 . exon 251456 254045 . - . ID=Physo140857.2;Parent=Physo140857;constitutive=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 254124 254206 . - 0 ID=Physo140857;Parent=Physo140857;rank=1 scaffold_90 . exon 254124 254206 . - . ID=Physo140857.1;Parent=Physo140857;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 ensembl protein_coding_gene 254481 255493 . + . ID=Physo140858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900063;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 254481 255493 . + . ID=Physo140858;Parent=Physo140858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 254481 254603 . + 0 ID=Physo140858;Parent=Physo140858;rank=1 scaffold_90 . exon 254481 254603 . + . ID=Physo140858.1;Parent=Physo140858;constitutive=1;rank=1 scaffold_90 . CDS 254673 254838 . + 0 ID=Physo140858;Parent=Physo140858;rank=2 scaffold_90 . exon 254673 254838 . + . ID=Physo140858.2;Parent=Physo140858;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_90 . CDS 254952 255493 . + 0 ID=Physo140858;Parent=Physo140858;rank=3 scaffold_90 . exon 254952 255493 . + . ID=Physo140858.3;Parent=Physo140858;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 ensembl protein_coding_gene 255575 258421 . - . ID=Physo140859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900064;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 255575 258421 . - . ID=Physo140859;Parent=Physo140859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 255575 257988 . - 0 ID=Physo140859;Parent=Physo140859;rank=3 scaffold_90 . exon 255575 257988 . - . ID=Physo140859.3;Parent=Physo140859;constitutive=1;ensembl_phase=1;rank=3 scaffold_90 . CDS 258104 258316 . - 0 ID=Physo140859;Parent=Physo140859;rank=2 scaffold_90 . CDS 258400 258421 . - 0 ID=Physo140859;Parent=Physo140859;rank=1 scaffold_90 . repeat_region 258320 258375 . ? . description=dust scaffold_90 . repeat_region 263222 263247 . ? . description=dust scaffold_90 . repeat_region 265355 265362 . ? . description=dust scaffold_90 . repeat_region 265968 265998 . ? . description=trf scaffold_90 . repeat_region 266114 266257 . + . description=(CAG)n scaffold_90 . repeat_region 266154 266192 . ? . description=trf scaffold_90 . exon 258104 258316 . - . ID=Physo140859.2;Parent=Physo140859;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_90 . exon 258400 258421 . - . ID=Physo140859.1;Parent=Physo140859;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 258777 261345 . + . ID=Physo140860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900065;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 258777 261345 . + . ID=Physo140860;Parent=Physo140860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 258777 259590 . + 0 ID=Physo140860;Parent=Physo140860;rank=1 scaffold_90 . exon 258777 259590 . + . ID=Physo140860.1;Parent=Physo140860;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . CDS 259651 259715 . + 0 ID=Physo140860;Parent=Physo140860;rank=2 scaffold_90 . exon 259651 259715 . + . ID=Physo140860.2;Parent=Physo140860;constitutive=1;ensembl_phase=1;rank=2 scaffold_90 . CDS 259858 261249 . + 0 ID=Physo140860;Parent=Physo140860;rank=3 scaffold_90 . exon 259858 261345 . + . ID=Physo140860.3;Parent=Physo140860;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_90 . biological_region 271788 271792 0.999 + . logic_name=eponine scaffold_90 . biological_region 271931 271939 0.999 + . logic_name=eponine scaffold_90 . biological_region 272056 272059 0.999 - . logic_name=eponine scaffold_90 . biological_region 272368 272371 0.999 - . logic_name=eponine scaffold_90 . biological_region 272423 272426 0.999 + . logic_name=eponine scaffold_90 . biological_region 272614 272616 0.999 - . logic_name=eponine scaffold_90 . biological_region 272628 272632 0.999 + . logic_name=eponine scaffold_90 . biological_region 272667 272672 0.999 + . logic_name=eponine scaffold_90 . repeat_region 272864 272976 . + . description=GA-rich scaffold_90 . biological_region 275262 275266 0.999 + . logic_name=eponine scaffold_90 . biological_region 277052 277053 0.999 - . logic_name=eponine scaffold_90 . biological_region 277109 277111 0.999 + . logic_name=eponine scaffold_90 ensembl protein_coding_gene 268190 269050 . - . ID=Physo140861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900066;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 268190 269050 . - . ID=Physo140861;Parent=Physo140861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 268190 269050 . - 0 ID=Physo140861;Parent=Physo140861;rank=1 scaffold_90 . exon 268190 269050 . - . ID=Physo140861.1;Parent=Physo140861;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 271933 273596 . + . ID=Physo140862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900067;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 271933 273596 . + . ID=Physo140862;Parent=Physo140862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 271933 272133 . + 0 ID=Physo140862;Parent=Physo140862;rank=1 scaffold_90 . exon 271933 272133 . + . ID=Physo140862.1;Parent=Physo140862;constitutive=1;rank=1 scaffold_90 . CDS 272212 273422 . + 0 ID=Physo140862;Parent=Physo140862;rank=2 scaffold_90 . exon 272212 273422 . + . ID=Physo140862.2;Parent=Physo140862;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_90 . CDS 273587 273596 . + 0 ID=Physo140862;Parent=Physo140862;rank=3 scaffold_90 . exon 273587 273596 . + . ID=Physo140862.3;Parent=Physo140862;constitutive=1;ensembl_phase=2;rank=3 scaffold_90 ensembl protein_coding_gene 273840 274712 . - . ID=Physo140863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900068;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 273840 274712 . - . ID=Physo140863;Parent=Physo140863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 273840 274039 . - 0 ID=Physo140863;Parent=Physo140863;rank=4 scaffold_90 . exon 273840 274039 . - . ID=Physo140863.4;Parent=Physo140863;constitutive=1;ensembl_phase=1;rank=4 scaffold_90 . CDS 274110 274203 . - 0 ID=Physo140863;Parent=Physo140863;rank=3 scaffold_90 . exon 274110 274203 . - . ID=Physo140863.3;Parent=Physo140863;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_90 . CDS 274277 274381 . - 0 ID=Physo140863;Parent=Physo140863;rank=2 scaffold_90 . exon 274277 274381 . - . ID=Physo140863.2;Parent=Physo140863;constitutive=1;rank=2 scaffold_90 . CDS 274452 274712 . - 0 ID=Physo140863;Parent=Physo140863;rank=1 scaffold_90 . exon 274452 274712 . - . ID=Physo140863.1;Parent=Physo140863;constitutive=1;rank=1 scaffold_90 . repeat_region 279539 279599 . ? . description=dust scaffold_90 . repeat_region 283164 283199 . ? . description=trf scaffold_90 . repeat_region 283168 283211 . ? . description=trf scaffold_90 . repeat_region 284126 284137 . ? . description=dust scaffold_90 ensembl protein_coding_gene 277706 280542 . - . ID=Physo140864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900069;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 277706 280542 . - . ID=Physo140864;Parent=Physo140864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 277706 278187 . - 0 ID=Physo140864;Parent=Physo140864;rank=7 scaffold_90 . exon 277706 278187 . - . ID=Physo140864.7;Parent=Physo140864;constitutive=1;ensembl_phase=1;rank=7 scaffold_90 . CDS 278263 278414 . - 0 ID=Physo140864;Parent=Physo140864;rank=6 scaffold_90 . exon 278263 278414 . - . ID=Physo140864.6;Parent=Physo140864;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_90 . CDS 278486 278549 . - 0 ID=Physo140864;Parent=Physo140864;rank=5 scaffold_90 . exon 278486 278549 . - . ID=Physo140864.5;Parent=Physo140864;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_90 . CDS 278869 278957 . - 0 ID=Physo140864;Parent=Physo140864;rank=4 scaffold_90 . exon 278869 278957 . - . ID=Physo140864.4;Parent=Physo140864;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_90 . CDS 279395 280312 . - 0 ID=Physo140864;Parent=Physo140864;rank=3 scaffold_90 . exon 279395 280312 . - . ID=Physo140864.3;Parent=Physo140864;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_90 . CDS 280337 280430 . - 0 ID=Physo140864;Parent=Physo140864;rank=2 scaffold_90 . exon 280337 280430 . - . ID=Physo140864.2;Parent=Physo140864;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_90 . CDS 280512 280542 . - 0 ID=Physo140864;Parent=Physo140864;rank=1 scaffold_90 . exon 280512 280542 . - . ID=Physo140864.1;Parent=Physo140864;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 ensembl protein_coding_gene 283496 284034 . - . ID=Physo140865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900070;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 283496 284034 . - . ID=Physo140865;Parent=Physo140865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 283496 283729 . - 0 ID=Physo140865;Parent=Physo140865;rank=2 scaffold_90 . exon 283496 283729 . - . ID=Physo140865.2;Parent=Physo140865;constitutive=1;rank=2 scaffold_90 . CDS 283774 284034 . - 0 ID=Physo140865;Parent=Physo140865;rank=1 scaffold_90 . exon 283774 284034 . - . ID=Physo140865.1;Parent=Physo140865;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 284800 285416 . + . ID=Physo140866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900071;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 284800 285416 . + . ID=Physo140866;Parent=Physo140866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 284800 285138 . + 0 ID=Physo140866;Parent=Physo140866;rank=1 scaffold_90 . exon 284800 285138 . + . ID=Physo140866.1;Parent=Physo140866;constitutive=1;rank=1 scaffold_90 . CDS 285183 285416 . + 0 ID=Physo140866;Parent=Physo140866;rank=2 scaffold_90 . exon 285183 285416 . + . ID=Physo140866.2;Parent=Physo140866;constitutive=1;rank=2 scaffold_90 . biological_region 288975 288976 0.999 + . logic_name=eponine scaffold_90 . biological_region 289071 289077 0.999 - . logic_name=eponine scaffold_90 . biological_region 289105 289109 0.999 - . logic_name=eponine scaffold_90 . biological_region 289184 289187 0.999 - . logic_name=eponine scaffold_90 . biological_region 289765 289766 0.999 - . logic_name=eponine scaffold_90 . biological_region 289772 289774 0.999 - . logic_name=eponine scaffold_90 . biological_region 294856 294859 0.999 + . logic_name=eponine scaffold_90 . biological_region 296333 296336 0.999 + . logic_name=eponine scaffold_90 . repeat_region 297226 297237 . ? . description=dust scaffold_90 . repeat_region 298989 299020 . ? . description=trf scaffold_90 . repeat_region 301880 301888 . ? . description=dust scaffold_90 . repeat_region 303818 303826 . ? . description=dust scaffold_90 ensembl protein_coding_gene 304188 305084 . - . ID=Physo140867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900072;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 304188 305084 . - . ID=Physo140867;Parent=Physo140867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 304188 304904 . - 0 ID=Physo140867;Parent=Physo140867;rank=2 scaffold_90 . exon 304188 304904 . - . ID=Physo140867.2;Parent=Physo140867;constitutive=1;rank=2 scaffold_90 . CDS 305010 305084 . - 0 ID=Physo140867;Parent=Physo140867;rank=1 scaffold_90 . exon 305010 305084 . - . ID=Physo140867.1;Parent=Physo140867;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 306134 307579 . - . ID=Physo140868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900073;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 306134 307579 . - . ID=Physo140868;Parent=Physo140868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 306134 306657 . - 0 ID=Physo140868;Parent=Physo140868;rank=5 scaffold_90 . exon 306134 306657 . - . ID=Physo140868.5;Parent=Physo140868;constitutive=1;ensembl_phase=1;rank=5 scaffold_90 . CDS 306730 306864 . - 0 ID=Physo140868;Parent=Physo140868;rank=4 scaffold_90 . exon 306730 306864 . - . ID=Physo140868.4;Parent=Physo140868;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_90 . CDS 306979 307152 . - 0 ID=Physo140868;Parent=Physo140868;rank=3 scaffold_90 . CDS 307271 307338 . - 0 ID=Physo140868;Parent=Physo140868;rank=2 scaffold_90 . CDS 307422 307579 . - 0 ID=Physo140868;Parent=Physo140868;rank=1 scaffold_90 . biological_region 314096 314100 0.999 + . logic_name=eponine scaffold_90 . biological_region 314461 314464 0.999 - . logic_name=eponine scaffold_90 . biological_region 314505 314508 0.999 - . logic_name=eponine scaffold_90 . biological_region 314952 314955 0.999 - . logic_name=eponine scaffold_90 . biological_region 316296 316298 0.999 + . logic_name=eponine scaffold_90 . biological_region 316812 316816 0.999 - . logic_name=eponine scaffold_90 ensembl protein_coding_gene 311421 312717 . - . ID=Physo109324;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_900010;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 311421 312717 . - . ID=Physo109324;Parent=Physo109324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 311421 311453 . - 0 ID=Physo109324;Parent=Physo109324;rank=4 scaffold_90 . exon 311421 311453 . - . ID=Physo109324.4;Parent=Physo109324;constitutive=1;rank=4 scaffold_90 . CDS 311494 311610 . - 0 ID=Physo109324;Parent=Physo109324;rank=3 scaffold_90 . exon 311494 311610 . - . ID=Physo109324.3;Parent=Physo109324;constitutive=1;rank=3 scaffold_90 . CDS 311688 312471 . - 0 ID=Physo109324;Parent=Physo109324;rank=2 scaffold_90 . exon 311688 312471 . - . ID=Physo109324.2;Parent=Physo109324;constitutive=1;ensembl_phase=2;rank=2 scaffold_90 . CDS 312548 312717 . - 0 ID=Physo109324;Parent=Physo109324;rank=1 scaffold_90 . exon 312548 312717 . - . ID=Physo109324.1;Parent=Physo109324;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 ensembl protein_coding_gene 314749 315722 . - . ID=Physo109325;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_900011;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 314749 315722 . - . ID=Physo109325;Parent=Physo109325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 314749 315720 . - 0 ID=Physo109325;Parent=Physo109325;rank=1 scaffold_90 . exon 314749 315722 . - . ID=Physo109325.1;Parent=Physo109325;constitutive=1;ensembl_phase=-1;rank=1 scaffold_90 . exon 306979 307152 . - . ID=Physo140868.3;Parent=Physo140868;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_90 . exon 307271 307338 . - . ID=Physo140868.2;Parent=Physo140868;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_90 . exon 307422 307579 . - . ID=Physo140868.1;Parent=Physo140868;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 ensembl protein_coding_gene 313006 314436 . - . ID=Physo140870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900075;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 313006 314436 . - . ID=Physo140870;Parent=Physo140870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 313006 314436 . - 0 ID=Physo140870;Parent=Physo140870;rank=1 scaffold_90 . exon 313006 314436 . - . ID=Physo140870.1;Parent=Physo140870;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 316208 317638 . - . ID=Physo140872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900077;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 316208 317638 . - . ID=Physo140872;Parent=Physo140872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 316208 317326 . - 0 ID=Physo140872;Parent=Physo140872;rank=1 scaffold_90 . exon 316208 317370 . - . ID=Physo140872.2;Parent=Physo140872;constitutive=1;ensembl_phase=-1;rank=2 scaffold_90 . repeat_region 321236 321277 . ? . description=trf scaffold_90 . repeat_region 322835 322842 . ? . description=dust scaffold_90 ensembl protein_coding_gene 321767 322204 . + . ID=Physo121266;biotype=protein_coding;external_name=estExt_Genewise1.C_900009;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 321767 322204 . + . ID=Physo121266;Parent=Physo121266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . exon 321767 322204 . + . ID=Physo121266.1;Parent=Physo121266;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_90 . CDS 321769 322188 . + 0 ID=Physo121266;Parent=Physo121266;rank=1 scaffold_90 ensembl protein_coding_gene 320841 321436 . + . ID=Physo121267;biotype=protein_coding;external_name=estExt_Genewise1.C_900010;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 320841 321436 . + . ID=Physo121267;Parent=Physo121267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . exon 320841 321436 . + . ID=Physo121267.1;Parent=Physo121267;constitutive=1;ensembl_phase=-1;rank=1 scaffold_90 . CDS 320918 321436 . + 0 ID=Physo121267;Parent=Physo121267;rank=1 scaffold_90 . exon 317633 317638 . - . ID=Physo140872.1;Parent=Physo140872;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_90 ensembl protein_coding_gene 317598 320405 . + . ID=Physo140873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900078;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 317598 320405 . + . ID=Physo140873;Parent=Physo140873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 317598 320405 . + 0 ID=Physo140873;Parent=Physo140873;rank=1 scaffold_90 . exon 317598 320405 . + . ID=Physo140873.1;Parent=Physo140873;constitutive=1;rank=1 scaffold_90 ensembl protein_coding_gene 322905 323970 . - . ID=Physo140875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_900080;logic_name=jgi_physo1_1 scaffold_90 ensembl transcript 322905 323970 . - . ID=Physo140875;Parent=Physo140875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_90 . CDS 322905 323160 . - 0 ID=Physo140875;Parent=Physo140875;rank=3 scaffold_90 . exon 322905 323160 . - . ID=Physo140875.3;Parent=Physo140875;constitutive=1;ensembl_phase=2;rank=3 scaffold_90 . CDS 323239 323684 . - 0 ID=Physo140875;Parent=Physo140875;rank=2 scaffold_90 . exon 323239 323684 . - . ID=Physo140875.2;Parent=Physo140875;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_90 . CDS 323770 323970 . - 0 ID=Physo140875;Parent=Physo140875;rank=1 scaffold_90 . exon 323770 323970 . - . ID=Physo140875.1;Parent=Physo140875;constitutive=1;rank=1 scaffold_90 . biological_region 326825 326831 0.999 - . logic_name=eponine scaffold_90 . biological_region 326880 326883 0.999 + . logic_name=eponine scaffold_90 ensembl tRNA_gene 331104 331173 . + . ID=EPrPSOG00000000019;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_90 ensembl transcript 331104 331173 . + . ID=EPrPSOT00000000019;Parent=EPrPSOG00000000019;biotype=tRNA;logic_name=ncrna_eg scaffold_90 . exon 331104 331173 . + . ID=EPrPSOE00000000019;Parent=EPrPSOT00000000019;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_90 . repeat_region 331243 345070 . ? . description=dust scaffold_90 . repeat_region 345071 346561 . ? . description=trf scaffold_90 . repeat_region 345400 345459 . ? . description=dust scaffold_90 . repeat_region 345792 345855 . ? . description=dust scaffold_90 . repeat_region 346205 346251 . ? . description=dust scaffold_90 ensembl tRNA_gene 346115 346185 . - . ID=EPrPSOG00000000213;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_90 ensembl transcript 346115 346185 . - . ID=EPrPSOT00000000213;Parent=EPrPSOG00000000213;biotype=tRNA;logic_name=ncrna_eg scaffold_90 ensembl tRNA_gene 345719 345789 . - . ID=EPrPSOG00000000223;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_90 ensembl transcript 345719 345789 . - . ID=EPrPSOT00000000223;Parent=EPrPSOG00000000223;biotype=tRNA;logic_name=ncrna_eg scaffold_90 ensembl tRNA_gene 345323 345393 . - . ID=EPrPSOG00000000295;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_90 ensembl transcript 345323 345393 . - . ID=EPrPSOT00000000295;Parent=EPrPSOG00000000295;biotype=tRNA;logic_name=ncrna_eg scaffold_90 . exon 346115 346185 . - . ID=EPrPSOE00000000213;Parent=EPrPSOT00000000213;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . exon 345719 345789 . - . ID=EPrPSOE00000000223;Parent=EPrPSOT00000000223;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_90 . exon 345323 345393 . - . ID=EPrPSOE00000000295;Parent=EPrPSOT00000000295;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_89 1 349674 scaffold_89 . biological_region 24 31 0.999 + . logic_name=eponine scaffold_89 . repeat_region 78 142 . ? . description=trf scaffold_89 . repeat_region 130 221 . ? . description=trf scaffold_89 . repeat_region 2571 2609 . ? . description=trf scaffold_89 . repeat_region 2727 3923 . - . description=Gypsy-2-I_PI-int scaffold_89 . repeat_region 3950 4569 . ? . description=dust scaffold_89 . repeat_region 4570 5309 . - . description=Gypsy-2-I_PI-int scaffold_89 . repeat_region 5070 5083 . ? . description=dust scaffold_89 . repeat_region 8851 8874 . ? . description=dust scaffold_89 . repeat_region 9664 9671 . ? . description=dust scaffold_89 . biological_region 9753 9755 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 45 1436 . + . ID=Physo140724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890001;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 45 1436 . + . ID=Physo140724;Parent=Physo140724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 45 685 . + . ID=Physo140724.1;Parent=Physo140724;constitutive=1;ensembl_phase=-1;rank=1 scaffold_89 . CDS 563 685 . + 0 ID=Physo140724;Parent=Physo140724;rank=1 scaffold_89 . CDS 822 1436 . + 0 ID=Physo140724;Parent=Physo140724;rank=2 scaffold_89 . exon 822 1436 . + . ID=Physo140724.2;Parent=Physo140724;constitutive=1;rank=2 scaffold_89 . repeat_region 14020 14184 . - . description=Sola3-1_PS scaffold_89 ensembl protein_coding_gene 17371 18402 . + . ID=Physo140725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890002;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 17371 18402 . + . ID=Physo140725;Parent=Physo140725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 17371 17634 . + 0 ID=Physo140725;Parent=Physo140725;rank=1 scaffold_89 . exon 17371 17634 . + . ID=Physo140725.1;Parent=Physo140725;constitutive=1;rank=1 scaffold_89 . CDS 17707 17834 . + 0 ID=Physo140725;Parent=Physo140725;rank=2 scaffold_89 . exon 17707 17834 . + . ID=Physo140725.2;Parent=Physo140725;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_89 . CDS 17902 18170 . + 0 ID=Physo140725;Parent=Physo140725;rank=3 scaffold_89 . exon 17902 18170 . + . ID=Physo140725.3;Parent=Physo140725;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_89 . CDS 18245 18402 . + 0 ID=Physo140725;Parent=Physo140725;rank=4 scaffold_89 . exon 18245 18402 . + . ID=Physo140725.4;Parent=Physo140725;constitutive=1;ensembl_phase=1;rank=4 scaffold_89 . repeat_region 20360 20409 . ? . description=dust scaffold_89 . repeat_region 23028 23072 . ? . description=trf scaffold_89 . repeat_region 23698 23736 . ? . description=trf scaffold_89 . repeat_region 24257 24269 . ? . description=dust scaffold_89 . biological_region 24610 24612 0.999 + . logic_name=eponine scaffold_89 . repeat_region 24651 24690 . ? . description=trf scaffold_89 . biological_region 24700 24704 0.999 - . logic_name=eponine scaffold_89 . repeat_region 25653 25694 . ? . description=trf scaffold_89 . repeat_region 26002 26109 . + . description=(GA)n scaffold_89 . repeat_region 26007 26109 . ? . description=trf scaffold_89 . repeat_region 26007 26109 . ? . description=dust scaffold_89 . biological_region 27803 27803 0.999 + . logic_name=eponine scaffold_89 . biological_region 29756 29760 0.999 + . logic_name=eponine scaffold_89 ensembl protein_coding_gene 22398 24757 . - . ID=Physo140726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890003;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 22398 24757 . - . ID=Physo140726;Parent=Physo140726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 22398 23390 . - 0 ID=Physo140726;Parent=Physo140726;rank=3 scaffold_89 . exon 22398 23390 . - . ID=Physo140726.3;Parent=Physo140726;constitutive=1;rank=3 scaffold_89 . CDS 23575 24222 . - 0 ID=Physo140726;Parent=Physo140726;rank=2 scaffold_89 . exon 23575 24222 . - . ID=Physo140726.2;Parent=Physo140726;constitutive=1;rank=2 scaffold_89 . CDS 24302 24757 . - 0 ID=Physo140726;Parent=Physo140726;rank=1 scaffold_89 . exon 24302 24757 . - . ID=Physo140726.1;Parent=Physo140726;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 27249 30805 . + . ID=Physo140727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890004;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 27249 30805 . + . ID=Physo140727;Parent=Physo140727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 27249 27437 . + 0 ID=Physo140727;Parent=Physo140727;rank=1 scaffold_89 . exon 27249 27437 . + . ID=Physo140727.1;Parent=Physo140727;constitutive=1;rank=1 scaffold_89 . CDS 27477 28419 . + 0 ID=Physo140727;Parent=Physo140727;rank=2 scaffold_89 . exon 27477 28419 . + . ID=Physo140727.2;Parent=Physo140727;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_89 . CDS 28511 29305 . + 0 ID=Physo140727;Parent=Physo140727;rank=3 scaffold_89 . exon 28511 29305 . + . ID=Physo140727.3;Parent=Physo140727;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_89 . CDS 29495 30510 . + 0 ID=Physo140727;Parent=Physo140727;rank=4 scaffold_89 . exon 29495 30510 . + . ID=Physo140727.4;Parent=Physo140727;constitutive=1;ensembl_phase=1;rank=4 scaffold_89 . CDS 30641 30805 . + 0 ID=Physo140727;Parent=Physo140727;rank=5 scaffold_89 . exon 30641 30805 . + . ID=Physo140727.5;Parent=Physo140727;constitutive=1;rank=5 scaffold_89 . repeat_region 40295 40302 . ? . description=dust scaffold_89 . biological_region 40721 40726 0.999 + . logic_name=eponine scaffold_89 . repeat_region 40972 40982 . ? . description=dust scaffold_89 . repeat_region 42889 42979 . ? . description=trf scaffold_89 . repeat_region 42898 42964 . ? . description=trf scaffold_89 . repeat_region 43560 43676 . ? . description=trf scaffold_89 . repeat_region 46933 46940 . ? . description=dust scaffold_89 . biological_region 49155 49156 0.999 + . logic_name=eponine scaffold_89 ensembl protein_coding_gene 41875 42805 . + . ID=Physo140728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890005;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 41875 42805 . + . ID=Physo140728;Parent=Physo140728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 41875 42022 . + 0 ID=Physo140728;Parent=Physo140728;rank=1 scaffold_89 . exon 41875 42022 . + . ID=Physo140728.1;Parent=Physo140728;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . CDS 42081 42527 . + 0 ID=Physo140728;Parent=Physo140728;rank=2 scaffold_89 . exon 42081 42527 . + . ID=Physo140728.2;Parent=Physo140728;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_89 . CDS 42648 42805 . + 0 ID=Physo140728;Parent=Physo140728;rank=3 scaffold_89 . exon 42648 42805 . + . ID=Physo140728.3;Parent=Physo140728;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 ensembl protein_coding_gene 44319 44921 . + . ID=Physo140729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890006;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 44319 44921 . + . ID=Physo140729;Parent=Physo140729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 44319 44921 . + 0 ID=Physo140729;Parent=Physo140729;rank=1 scaffold_89 . exon 44319 44921 . + . ID=Physo140729.1;Parent=Physo140729;constitutive=1;rank=1 scaffold_89 . repeat_region 62024 62038 . ? . description=dust scaffold_89 . repeat_region 62372 62384 . ? . description=dust scaffold_89 . repeat_region 63823 63832 . ? . description=dust scaffold_89 . repeat_region 64861 64911 . ? . description=trf scaffold_89 . repeat_region 64963 64970 . ? . description=dust scaffold_89 . repeat_region 65171 65183 . ? . description=dust scaffold_89 . repeat_region 65471 65483 . ? . description=dust scaffold_89 . biological_region 66618 66618 0.999 + . logic_name=eponine scaffold_89 . repeat_region 66782 66802 . ? . description=trf scaffold_89 . repeat_region 66782 66802 . ? . description=dust scaffold_89 ensembl protein_coding_gene 78512 79389 . + . ID=Physo140730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890007;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 78512 79389 . + . ID=Physo140730;Parent=Physo140730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 78512 78530 . + 0 ID=Physo140730;Parent=Physo140730;rank=1 scaffold_89 . exon 78512 78530 . + . ID=Physo140730.1;Parent=Physo140730;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . CDS 78555 78904 . + 0 ID=Physo140730;Parent=Physo140730;rank=2 scaffold_89 . exon 78555 78904 . + . ID=Physo140730.2;Parent=Physo140730;constitutive=1;ensembl_phase=1;rank=2 scaffold_89 . CDS 79300 79389 . + 0 ID=Physo140730;Parent=Physo140730;rank=3 scaffold_89 . exon 79300 79389 . + . ID=Physo140730.3;Parent=Physo140730;constitutive=1;rank=3 scaffold_89 . repeat_region 83389 83396 . ? . description=dust scaffold_89 . repeat_region 85131 85138 . ? . description=dust scaffold_89 . biological_region 85352 85355 0.999 + . logic_name=eponine scaffold_89 . biological_region 89299 89301 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 89359 94140 . + . ID=Physo140731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890008;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 89359 94140 . + . ID=Physo140731;Parent=Physo140731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 89359 89481 . + 0 ID=Physo140731;Parent=Physo140731;rank=1 scaffold_89 . exon 89359 89481 . + . ID=Physo140731.1;Parent=Physo140731;constitutive=1;rank=1 scaffold_89 . CDS 89516 89797 . + 0 ID=Physo140731;Parent=Physo140731;rank=2 scaffold_89 . exon 89516 89797 . + . ID=Physo140731.2;Parent=Physo140731;constitutive=1;rank=2 scaffold_89 . CDS 89872 90104 . + 0 ID=Physo140731;Parent=Physo140731;rank=3 scaffold_89 . exon 89872 90104 . + . ID=Physo140731.3;Parent=Physo140731;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_89 . CDS 90370 90758 . + 0 ID=Physo140731;Parent=Physo140731;rank=4 scaffold_89 . CDS 91109 91223 . + 0 ID=Physo140731;Parent=Physo140731;rank=5 scaffold_89 . CDS 91377 92219 . + 0 ID=Physo140731;Parent=Physo140731;rank=6 scaffold_89 . CDS 92603 92957 . + 0 ID=Physo140731;Parent=Physo140731;rank=7 scaffold_89 . CDS 93048 93243 . + 0 ID=Physo140731;Parent=Physo140731;rank=8 scaffold_89 . CDS 93498 93796 . + 0 ID=Physo140731;Parent=Physo140731;rank=9 scaffold_89 . CDS 93877 94140 . + 0 ID=Physo140731;Parent=Physo140731;rank=10 scaffold_89 . repeat_region 91889 91934 . ? . description=trf scaffold_89 . repeat_region 97249 97317 . ? . description=trf scaffold_89 . exon 90370 90758 . + . ID=Physo140731.4;Parent=Physo140731;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_89 . exon 91109 91223 . + . ID=Physo140731.5;Parent=Physo140731;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_89 . exon 91377 92219 . + . ID=Physo140731.6;Parent=Physo140731;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_89 . exon 92603 92957 . + . ID=Physo140731.7;Parent=Physo140731;constitutive=1;ensembl_phase=2;rank=7 scaffold_89 . exon 93048 93243 . + . ID=Physo140731.8;Parent=Physo140731;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_89 . exon 93498 93796 . + . ID=Physo140731.9;Parent=Physo140731;constitutive=1;ensembl_phase=1;rank=9 scaffold_89 . exon 93877 94140 . + . ID=Physo140731.10;Parent=Physo140731;constitutive=1;rank=10 scaffold_89 ensembl protein_coding_gene 94815 95774 . + . ID=Physo140732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890009;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 94815 95774 . + . ID=Physo140732;Parent=Physo140732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 94815 94990 . + 0 ID=Physo140732;Parent=Physo140732;rank=1 scaffold_89 . exon 94815 94990 . + . ID=Physo140732.1;Parent=Physo140732;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 95269 95275 . + 0 ID=Physo140732;Parent=Physo140732;rank=2 scaffold_89 . exon 95269 95275 . + . ID=Physo140732.2;Parent=Physo140732;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 95337 95774 . + 0 ID=Physo140732;Parent=Physo140732;rank=3 scaffold_89 . exon 95337 95774 . + . ID=Physo140732.3;Parent=Physo140732;constitutive=1;rank=3 scaffold_89 . repeat_region 99994 100273 . - . description=GypsyPi-1c_I-int scaffold_89 . repeat_region 100483 102861 . - . description=GypsyPi-1c_I-int scaffold_89 . biological_region 101086 101087 0.999 - . logic_name=eponine scaffold_89 . biological_region 103394 103398 0.999 + . logic_name=eponine scaffold_89 . biological_region 103433 103435 0.999 + . logic_name=eponine scaffold_89 . biological_region 103572 103572 0.999 + . logic_name=eponine scaffold_89 . biological_region 103591 103595 0.999 - . logic_name=eponine scaffold_89 . biological_region 103986 103990 0.999 + . logic_name=eponine scaffold_89 . biological_region 104003 104007 0.999 - . logic_name=eponine scaffold_89 . repeat_region 104516 104562 . - . description=GypsyPi-1c_I-int scaffold_89 . biological_region 105105 105108 0.999 - . logic_name=eponine scaffold_89 . biological_region 105158 105162 0.999 + . logic_name=eponine scaffold_89 . biological_region 108820 108824 0.999 + . logic_name=eponine scaffold_89 . biological_region 108899 108903 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 100610 103232 . - . ID=Physo140733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890010;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 100610 103232 . - . ID=Physo140733;Parent=Physo140733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 100610 102760 . - 0 ID=Physo140733;Parent=Physo140733;rank=2 scaffold_89 . exon 100610 102760 . - . ID=Physo140733.2;Parent=Physo140733;constitutive=1;rank=2 scaffold_89 . CDS 102783 103232 . - 0 ID=Physo140733;Parent=Physo140733;rank=1 scaffold_89 . exon 102783 103232 . - . ID=Physo140733.1;Parent=Physo140733;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 107063 108994 . - . ID=Physo140734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890011;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 107063 108994 . - . ID=Physo140734;Parent=Physo140734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 107063 107088 . - 0 ID=Physo140734;Parent=Physo140734;rank=3 scaffold_89 . exon 107063 107088 . - . ID=Physo140734.3;Parent=Physo140734;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . CDS 107147 107552 . - 0 ID=Physo140734;Parent=Physo140734;rank=2 scaffold_89 . exon 107147 107552 . - . ID=Physo140734.2;Parent=Physo140734;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_89 . CDS 107801 108994 . - 0 ID=Physo140734;Parent=Physo140734;rank=1 scaffold_89 . exon 107801 108994 . - . ID=Physo140734.1;Parent=Physo140734;constitutive=1;rank=1 scaffold_89 . repeat_region 115026 115067 . ? . description=trf scaffold_89 . repeat_region 116283 116330 . ? . description=trf scaffold_89 ensembl protein_coding_gene 110759 119604 . + . ID=Physo140735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890012;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 110759 119604 . + . ID=Physo140735;Parent=Physo140735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 110759 118766 . + 0 ID=Physo140735;Parent=Physo140735;rank=1 scaffold_89 . exon 110759 118766 . + . ID=Physo140735.1;Parent=Physo140735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . CDS 119051 119604 . + 0 ID=Physo140735;Parent=Physo140735;rank=2 scaffold_89 . exon 119051 119604 . + . ID=Physo140735.2;Parent=Physo140735;constitutive=1;ensembl_phase=1;rank=2 scaffold_89 . biological_region 121556 121559 0.999 - . logic_name=eponine scaffold_89 . biological_region 121688 121691 0.999 + . logic_name=eponine scaffold_89 . repeat_region 122483 122536 . ? . description=dust scaffold_89 . repeat_region 124116 124176 . ? . description=dust scaffold_89 . biological_region 124284 124286 0.999 - . logic_name=eponine scaffold_89 . biological_region 124307 124312 0.999 - . logic_name=eponine scaffold_89 . biological_region 126457 126457 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 120547 121807 . - . ID=Physo140736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890013;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 120547 121807 . - . ID=Physo140736;Parent=Physo140736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 120547 120603 . - 0 ID=Physo140736;Parent=Physo140736;rank=2 scaffold_89 . exon 120547 120603 . - . ID=Physo140736.2;Parent=Physo140736;constitutive=1;rank=2 scaffold_89 . CDS 120653 121807 . - 0 ID=Physo140736;Parent=Physo140736;rank=1 scaffold_89 . exon 120653 121807 . - . ID=Physo140736.1;Parent=Physo140736;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 124178 127887 . + . ID=Physo140737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890014;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 124178 127887 . + . ID=Physo140737;Parent=Physo140737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 124178 124317 . + 0 ID=Physo140737;Parent=Physo140737;rank=1 scaffold_89 . exon 124178 124317 . + . ID=Physo140737.1;Parent=Physo140737;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 124386 124531 . + 0 ID=Physo140737;Parent=Physo140737;rank=2 scaffold_89 . exon 124386 124531 . + . ID=Physo140737.2;Parent=Physo140737;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 124603 125647 . + 0 ID=Physo140737;Parent=Physo140737;rank=3 scaffold_89 . exon 124603 125647 . + . ID=Physo140737.3;Parent=Physo140737;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_89 . CDS 125672 125706 . + 0 ID=Physo140737;Parent=Physo140737;rank=4 scaffold_89 . exon 125672 125706 . + . ID=Physo140737.4;Parent=Physo140737;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_89 . CDS 125775 125941 . + 0 ID=Physo140737;Parent=Physo140737;rank=5 scaffold_89 . exon 125775 125941 . + . ID=Physo140737.5;Parent=Physo140737;constitutive=1;ensembl_phase=1;rank=5 scaffold_89 . CDS 126004 126597 . + 0 ID=Physo140737;Parent=Physo140737;rank=6 scaffold_89 . exon 126004 126597 . + . ID=Physo140737.6;Parent=Physo140737;constitutive=1;rank=6 scaffold_89 . CDS 126685 126809 . + 0 ID=Physo140737;Parent=Physo140737;rank=7 scaffold_89 . exon 126685 126809 . + . ID=Physo140737.7;Parent=Physo140737;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_89 . CDS 126961 126967 . + 0 ID=Physo140737;Parent=Physo140737;rank=8 scaffold_89 . exon 126961 126967 . + . ID=Physo140737.8;Parent=Physo140737;constitutive=1;ensembl_phase=2;rank=8 scaffold_89 . CDS 127130 127793 . + 0 ID=Physo140737;Parent=Physo140737;rank=9 scaffold_89 . exon 127130 127793 . + . ID=Physo140737.9;Parent=Physo140737;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_89 . CDS 127817 127887 . + 0 ID=Physo140737;Parent=Physo140737;rank=10 scaffold_89 . exon 127817 127887 . + . ID=Physo140737.10;Parent=Physo140737;constitutive=1;ensembl_phase=1;rank=10 scaffold_89 . repeat_region 132893 132934 . ? . description=trf scaffold_89 ensembl protein_coding_gene 132742 133890 . + . ID=Physo140739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890016;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 132742 133890 . + . ID=Physo140739;Parent=Physo140739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 132742 132836 . + 0 ID=Physo140739;Parent=Physo140739;rank=1 scaffold_89 . exon 132742 132836 . + . ID=Physo140739.1;Parent=Physo140739;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 132939 133890 . + 0 ID=Physo140739;Parent=Physo140739;rank=2 scaffold_89 . exon 132939 133890 . + . ID=Physo140739.2;Parent=Physo140739;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 ensembl protein_coding_gene 134188 135378 . + . ID=Physo140740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890017;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 134188 135378 . + . ID=Physo140740;Parent=Physo140740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 134188 134579 . + 0 ID=Physo140740;Parent=Physo140740;rank=1 scaffold_89 . exon 134188 134579 . + . ID=Physo140740.1;Parent=Physo140740;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 134646 134740 . + 0 ID=Physo140740;Parent=Physo140740;rank=2 scaffold_89 . exon 134646 134740 . + . ID=Physo140740.2;Parent=Physo140740;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 134813 135209 . + 0 ID=Physo140740;Parent=Physo140740;rank=3 scaffold_89 . exon 134813 135209 . + . ID=Physo140740.3;Parent=Physo140740;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_89 . CDS 135357 135378 . + 0 ID=Physo140740;Parent=Physo140740;rank=4 scaffold_89 . exon 135357 135378 . + . ID=Physo140740.4;Parent=Physo140740;constitutive=1;ensembl_phase=2;rank=4 scaffold_89 ensembl protein_coding_gene 138351 138737 . - . ID=Physo140741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890018;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 138351 138737 . - . ID=Physo140741;Parent=Physo140741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 138351 138737 . - 0 ID=Physo140741;Parent=Physo140741;rank=1 scaffold_89 . exon 138351 138737 . - . ID=Physo140741.1;Parent=Physo140741;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 130604 132484 . + . ID=Physo158198;biotype=protein_coding;external_name=C_scaffold_89000004;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 130604 132484 . + . ID=Physo158198;Parent=Physo158198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 130604 130820 . + 0 ID=Physo158198;Parent=Physo158198;rank=1 scaffold_89 . exon 130604 130820 . + . ID=Physo158198.1;Parent=Physo158198;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . CDS 130878 131693 . + 0 ID=Physo158198;Parent=Physo158198;rank=2 scaffold_89 . exon 130878 131693 . + . ID=Physo158198.2;Parent=Physo158198;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_89 . CDS 131739 132484 . + 0 ID=Physo158198;Parent=Physo158198;rank=3 scaffold_89 . exon 131739 132484 . + . ID=Physo158198.3;Parent=Physo158198;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . biological_region 140205 140206 0.999 - . logic_name=eponine scaffold_89 . biological_region 143344 143344 0.999 + . logic_name=eponine scaffold_89 . biological_region 143472 143476 0.999 - . logic_name=eponine scaffold_89 . biological_region 143476 143477 0.999 + . logic_name=eponine scaffold_89 . repeat_region 148714 148725 . ? . description=dust scaffold_89 ensembl protein_coding_gene 139911 140954 . - . ID=Physo140742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890019;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 139911 140954 . - . ID=Physo140742;Parent=Physo140742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 139911 140253 . - 0 ID=Physo140742;Parent=Physo140742;rank=3 scaffold_89 . exon 139911 140253 . - . ID=Physo140742.3;Parent=Physo140742;constitutive=1;ensembl_phase=2;rank=3 scaffold_89 . CDS 140282 140686 . - 0 ID=Physo140742;Parent=Physo140742;rank=2 scaffold_89 . exon 140282 140686 . - . ID=Physo140742.2;Parent=Physo140742;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_89 . CDS 140836 140954 . - 0 ID=Physo140742;Parent=Physo140742;rank=1 scaffold_89 . exon 140836 140954 . - . ID=Physo140742.1;Parent=Physo140742;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 ensembl protein_coding_gene 141329 144992 . + . ID=Physo140743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890020;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 141329 144992 . + . ID=Physo140743;Parent=Physo140743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 141329 142338 . + 0 ID=Physo140743;Parent=Physo140743;rank=1 scaffold_89 . exon 141329 142338 . + . ID=Physo140743.1;Parent=Physo140743;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 142411 142503 . + 0 ID=Physo140743;Parent=Physo140743;rank=2 scaffold_89 . exon 142411 142503 . + . ID=Physo140743.2;Parent=Physo140743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_89 . CDS 142558 142697 . + 0 ID=Physo140743;Parent=Physo140743;rank=3 scaffold_89 . exon 142558 142697 . + . ID=Physo140743.3;Parent=Physo140743;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_89 . CDS 142731 143011 . + 0 ID=Physo140743;Parent=Physo140743;rank=4 scaffold_89 . exon 142731 143011 . + . ID=Physo140743.4;Parent=Physo140743;constitutive=1;ensembl_phase=1;rank=4 scaffold_89 . CDS 143114 143545 . + 0 ID=Physo140743;Parent=Physo140743;rank=5 scaffold_89 . exon 143114 143545 . + . ID=Physo140743.5;Parent=Physo140743;constitutive=1;rank=5 scaffold_89 . CDS 143589 144250 . + 0 ID=Physo140743;Parent=Physo140743;rank=6 scaffold_89 . exon 143589 144250 . + . ID=Physo140743.6;Parent=Physo140743;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_89 . CDS 144428 144992 . + 0 ID=Physo140743;Parent=Physo140743;rank=7 scaffold_89 . exon 144428 144992 . + . ID=Physo140743.7;Parent=Physo140743;constitutive=1;ensembl_phase=2;rank=7 scaffold_89 ensembl protein_coding_gene 148877 150484 . - . ID=Physo140744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890021;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 148877 150484 . - . ID=Physo140744;Parent=Physo140744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 148877 148932 . - 0 ID=Physo140744;Parent=Physo140744;rank=3 scaffold_89 . exon 148877 148932 . - . ID=Physo140744.3;Parent=Physo140744;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . CDS 148988 149615 . - 0 ID=Physo140744;Parent=Physo140744;rank=2 scaffold_89 . exon 148988 149615 . - . ID=Physo140744.2;Parent=Physo140744;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_89 . CDS 149729 150484 . - 0 ID=Physo140744;Parent=Physo140744;rank=1 scaffold_89 . exon 149729 150484 . - . ID=Physo140744.1;Parent=Physo140744;constitutive=1;rank=1 scaffold_89 . repeat_region 155035 155076 . ? . description=trf scaffold_89 . repeat_region 156457 156516 . ? . description=trf scaffold_89 . repeat_region 156461 156508 . ? . description=trf scaffold_89 . repeat_region 156466 156531 . ? . description=trf scaffold_89 . repeat_region 157427 157478 . ? . description=trf scaffold_89 . repeat_region 157427 157478 . ? . description=trf scaffold_89 . repeat_region 157427 157478 . ? . description=trf scaffold_89 . repeat_region 157733 157781 . ? . description=trf scaffold_89 . repeat_region 157959 157993 . ? . description=trf scaffold_89 . repeat_region 158003 158047 . ? . description=trf scaffold_89 . repeat_region 158245 158309 . ? . description=trf scaffold_89 ensembl protein_coding_gene 156232 157014 . - . ID=Physo140745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890022;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 156232 157014 . - . ID=Physo140745;Parent=Physo140745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 156232 157014 . - 0 ID=Physo140745;Parent=Physo140745;rank=1 scaffold_89 . exon 156232 157014 . - . ID=Physo140745.1;Parent=Physo140745;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 157487 158317 . + . ID=Physo140746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890023;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 157487 158317 . + . ID=Physo140746;Parent=Physo140746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 157487 158317 . + 0 ID=Physo140746;Parent=Physo140746;rank=1 scaffold_89 . exon 157487 158317 . + . ID=Physo140746.1;Parent=Physo140746;constitutive=1;rank=1 scaffold_89 . repeat_region 159998 161854 . ? . description=dust scaffold_89 . biological_region 162948 162949 0.999 - . logic_name=eponine scaffold_89 . biological_region 163001 163006 0.999 + . logic_name=eponine scaffold_89 . biological_region 163036 163040 0.999 - . logic_name=eponine scaffold_89 . repeat_region 164535 168474 . ? . description=dust scaffold_89 . repeat_region 168808 168892 . ? . description=dust scaffold_89 . biological_region 169063 169066 0.999 - . logic_name=eponine scaffold_89 . repeat_region 169338 174840 . ? . description=dust scaffold_89 ensembl protein_coding_gene 162494 163372 . - . ID=Physo140747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890024;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 162494 163372 . - . ID=Physo140747;Parent=Physo140747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 162494 163372 . - 0 ID=Physo140747;Parent=Physo140747;rank=1 scaffold_89 . exon 162494 163372 . - . ID=Physo140747.1;Parent=Physo140747;constitutive=1;rank=1 scaffold_89 . repeat_region 177665 177729 . ? . description=trf scaffold_89 . repeat_region 177927 177989 . ? . description=trf scaffold_89 . repeat_region 177999 178033 . ? . description=trf scaffold_89 . repeat_region 178110 178175 . ? . description=trf scaffold_89 . repeat_region 178504 178528 . ? . description=trf scaffold_89 ensembl protein_coding_gene 177657 178487 . - . ID=Physo140748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890025;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 177657 178487 . - . ID=Physo140748;Parent=Physo140748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 177657 178487 . - 0 ID=Physo140748;Parent=Physo140748;rank=1 scaffold_89 . exon 177657 178487 . - . ID=Physo140748.1;Parent=Physo140748;constitutive=1;rank=1 scaffold_89 . repeat_region 178552 180174 . ? . description=dust scaffold_89 . repeat_region 180532 180595 . ? . description=dust scaffold_89 . repeat_region 180789 180879 . ? . description=dust scaffold_89 . biological_region 181186 181190 0.999 + . logic_name=eponine scaffold_89 . repeat_region 181364 181410 . ? . description=dust scaffold_89 . biological_region 188612 188614 0.999 + . logic_name=eponine scaffold_89 ensembl protein_coding_gene 180496 181350 . - . ID=Physo140749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890026;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 180496 181350 . - . ID=Physo140749;Parent=Physo140749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 180496 180881 . - 0 ID=Physo140749;Parent=Physo140749;rank=2 scaffold_89 . exon 180496 180881 . - . ID=Physo140749.2;Parent=Physo140749;constitutive=1;ensembl_phase=1;rank=2 scaffold_89 . CDS 180909 181350 . - 0 ID=Physo140749;Parent=Physo140749;rank=1 scaffold_89 . exon 180909 181350 . - . ID=Physo140749.1;Parent=Physo140749;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 ensembl protein_coding_gene 184422 184909 . - . ID=Physo140750;biotype=protein_coding;description=PsAvh196 [Source:UniProtKB/TrEMBL%3BAcc:E0W5I9];external_name=estExt_fgenesh1_pg.C_890027;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 184422 184909 . - . ID=Physo140750;Parent=Physo140750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 184422 184909 . - . ID=Physo140750.1;Parent=Physo140750;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_89 . CDS 184463 184909 . - 0 ID=Physo140750;Parent=Physo140750;rank=1 scaffold_89 ensembl protein_coding_gene 186471 187730 . + . ID=Physo140751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890028;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 186471 187730 . + . ID=Physo140751;Parent=Physo140751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 186471 187730 . + 0 ID=Physo140751;Parent=Physo140751;rank=1 scaffold_89 . exon 186471 187730 . + . ID=Physo140751.1;Parent=Physo140751;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 187882 191556 . - . ID=Physo140752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890029;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 187882 191556 . - . ID=Physo140752;Parent=Physo140752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 187882 191556 . - 0 ID=Physo140752;Parent=Physo140752;rank=1 scaffold_89 . exon 187882 191556 . - . ID=Physo140752.1;Parent=Physo140752;constitutive=1;rank=1 scaffold_89 . repeat_region 191768 191809 . ? . description=trf scaffold_89 . repeat_region 199474 199517 . ? . description=trf scaffold_89 . repeat_region 199561 199608 . ? . description=trf scaffold_89 ensembl protein_coding_gene 192104 193105 . - . ID=Physo140753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890030;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 192104 193105 . - . ID=Physo140753;Parent=Physo140753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 192104 193105 . - 0 ID=Physo140753;Parent=Physo140753;rank=1 scaffold_89 . exon 192104 193105 . - . ID=Physo140753.1;Parent=Physo140753;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 193534 194076 . - . ID=Physo140754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890031;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 193534 194076 . - . ID=Physo140754;Parent=Physo140754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 193534 194076 . - 0 ID=Physo140754;Parent=Physo140754;rank=1 scaffold_89 . exon 193534 194076 . - . ID=Physo140754.1;Parent=Physo140754;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 197884 199026 . + . ID=Physo140755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890032;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 197884 199026 . + . ID=Physo140755;Parent=Physo140755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 197884 199026 . + 0 ID=Physo140755;Parent=Physo140755;rank=1 scaffold_89 . exon 197884 199026 . + . ID=Physo140755.1;Parent=Physo140755;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 199466 200705 . - . ID=Physo140756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890033;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 199466 200705 . - . ID=Physo140756;Parent=Physo140756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 199466 199571 . - 0 ID=Physo140756;Parent=Physo140756;rank=5 scaffold_89 . exon 199466 199571 . - . ID=Physo140756.5;Parent=Physo140756;constitutive=1;ensembl_phase=2;rank=5 scaffold_89 . CDS 199602 199759 . - 0 ID=Physo140756;Parent=Physo140756;rank=4 scaffold_89 . exon 199602 199759 . - . ID=Physo140756.4;Parent=Physo140756;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_89 . CDS 199827 199980 . - 0 ID=Physo140756;Parent=Physo140756;rank=3 scaffold_89 . CDS 200019 200299 . - 0 ID=Physo140756;Parent=Physo140756;rank=2 scaffold_89 . CDS 200586 200705 . - 0 ID=Physo140756;Parent=Physo140756;rank=1 scaffold_89 . repeat_region 202103 202645 . + . description=GypsyPi-1c_I-int scaffold_89 . biological_region 202343 202345 0.999 + . logic_name=eponine scaffold_89 . biological_region 202878 202880 0.999 - . logic_name=eponine scaffold_89 . biological_region 203315 203317 0.999 + . logic_name=eponine scaffold_89 . repeat_region 203365 203975 . + . description=GypsyPi-1c_I-int scaffold_89 . repeat_region 203981 206308 . + . description=GypsyPi-1c_I-int scaffold_89 . repeat_region 206819 206950 . + . description=GypsyPi-1c_I-int scaffold_89 . biological_region 207829 207834 0.999 + . logic_name=eponine scaffold_89 . exon 199827 199980 . - . ID=Physo140756.3;Parent=Physo140756;constitutive=1;ensembl_phase=2;rank=3 scaffold_89 . exon 200019 200299 . - . ID=Physo140756.2;Parent=Physo140756;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_89 . exon 200586 200705 . - . ID=Physo140756.1;Parent=Physo140756;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 201124 205983 . + . ID=Physo140757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890034;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 201124 205983 . + . ID=Physo140757;Parent=Physo140757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 201124 201626 . + 0 ID=Physo140757;Parent=Physo140757;rank=1 scaffold_89 . exon 201124 201626 . + . ID=Physo140757.1;Parent=Physo140757;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 201889 202085 . + 0 ID=Physo140757;Parent=Physo140757;rank=2 scaffold_89 . exon 201889 202085 . + . ID=Physo140757.2;Parent=Physo140757;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 202247 204482 . + 0 ID=Physo140757;Parent=Physo140757;rank=3 scaffold_89 . exon 202247 204482 . + . ID=Physo140757.3;Parent=Physo140757;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_89 . CDS 204526 204893 . + 0 ID=Physo140757;Parent=Physo140757;rank=4 scaffold_89 . exon 204526 204893 . + . ID=Physo140757.4;Parent=Physo140757;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_89 . CDS 205536 205910 . + 0 ID=Physo140757;Parent=Physo140757;rank=5 scaffold_89 . exon 205536 205910 . + . ID=Physo140757.5;Parent=Physo140757;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_89 . CDS 205979 205983 . + 0 ID=Physo140757;Parent=Physo140757;rank=6 scaffold_89 . exon 205979 205983 . + . ID=Physo140757.6;Parent=Physo140757;constitutive=1;ensembl_phase=1;rank=6 scaffold_89 ensembl protein_coding_gene 206289 210186 . - . ID=Physo140758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890035;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 206289 210186 . - . ID=Physo140758;Parent=Physo140758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 206289 206688 . - 0 ID=Physo140758;Parent=Physo140758;rank=8 scaffold_89 . exon 206289 206688 . - . ID=Physo140758.8;Parent=Physo140758;constitutive=1;ensembl_phase=2;rank=8 scaffold_89 . CDS 206961 207326 . - 0 ID=Physo140758;Parent=Physo140758;rank=7 scaffold_89 . exon 206961 207326 . - . ID=Physo140758.7;Parent=Physo140758;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_89 . CDS 207363 207711 . - 0 ID=Physo140758;Parent=Physo140758;rank=6 scaffold_89 . exon 207363 207711 . - . ID=Physo140758.6;Parent=Physo140758;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_89 . CDS 207759 208219 . - 0 ID=Physo140758;Parent=Physo140758;rank=5 scaffold_89 . exon 207759 208219 . - . ID=Physo140758.5;Parent=Physo140758;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_89 . CDS 208780 209374 . - 0 ID=Physo140758;Parent=Physo140758;rank=4 scaffold_89 . exon 208780 209374 . - . ID=Physo140758.4;Parent=Physo140758;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_89 . CDS 209427 209477 . - 0 ID=Physo140758;Parent=Physo140758;rank=3 scaffold_89 . exon 209427 209477 . - . ID=Physo140758.3;Parent=Physo140758;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_89 . CDS 209747 209891 . - 0 ID=Physo140758;Parent=Physo140758;rank=2 scaffold_89 . exon 209747 209891 . - . ID=Physo140758.2;Parent=Physo140758;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_89 . CDS 209965 210186 . - 0 ID=Physo140758;Parent=Physo140758;rank=1 scaffold_89 . repeat_region 210059 210106 . ? . description=trf scaffold_89 . repeat_region 211200 211224 . ? . description=trf scaffold_89 . exon 209965 210186 . - . ID=Physo140758.1;Parent=Physo140758;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 212852 213300 . - . ID=Physo140759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890036;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 212852 213300 . - . ID=Physo140759;Parent=Physo140759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 212852 213109 . - 0 ID=Physo140759;Parent=Physo140759;rank=2 scaffold_89 . exon 212852 213109 . - . ID=Physo140759.2;Parent=Physo140759;constitutive=1;rank=2 scaffold_89 . CDS 213160 213300 . - 0 ID=Physo140759;Parent=Physo140759;rank=1 scaffold_89 . exon 213160 213300 . - . ID=Physo140759.1;Parent=Physo140759;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 213531 214034 . - . ID=Physo140760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890037;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 213531 214034 . - . ID=Physo140760;Parent=Physo140760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 213531 214034 . - 0 ID=Physo140760;Parent=Physo140760;rank=1 scaffold_89 . exon 213531 214034 . - . ID=Physo140760.1;Parent=Physo140760;constitutive=1;rank=1 scaffold_89 . biological_region 221588 221592 0.999 - . logic_name=eponine scaffold_89 . biological_region 222612 222616 0.999 - . logic_name=eponine scaffold_89 . biological_region 222671 222672 0.999 - . logic_name=eponine scaffold_89 . biological_region 222690 222691 0.999 + . logic_name=eponine scaffold_89 . repeat_region 223940 223970 . ? . description=dust scaffold_89 . repeat_region 227730 227779 . ? . description=dust scaffold_89 . repeat_region 228059 228066 . ? . description=dust scaffold_89 . repeat_region 228886 228935 . ? . description=dust scaffold_89 ensembl protein_coding_gene 220530 220994 . - . ID=Physo140761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890038;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 220530 220994 . - . ID=Physo140761;Parent=Physo140761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 220530 220994 . - 0 ID=Physo140761;Parent=Physo140761;rank=1 scaffold_89 . exon 220530 220994 . - . ID=Physo140761.1;Parent=Physo140761;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 221384 222048 . - . ID=Physo140762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890039;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 221384 222048 . - . ID=Physo140762;Parent=Physo140762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 221384 222048 . - . ID=Physo140762.1;Parent=Physo140762;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_89 . CDS 221447 222001 . - 0 ID=Physo140762;Parent=Physo140762;rank=1 scaffold_89 ensembl protein_coding_gene 222351 222939 . - . ID=Physo140763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890040;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 222351 222939 . - . ID=Physo140763;Parent=Physo140763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 222351 222939 . - . ID=Physo140763.1;Parent=Physo140763;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_89 . CDS 222446 222937 . - 0 ID=Physo140763;Parent=Physo140763;rank=1 scaffold_89 ensembl protein_coding_gene 226961 227392 . - . ID=Physo140764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890041;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 226961 227392 . - . ID=Physo140764;Parent=Physo140764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 226961 227392 . - 0 ID=Physo140764;Parent=Physo140764;rank=1 scaffold_89 . exon 226961 227392 . - . ID=Physo140764.1;Parent=Physo140764;constitutive=1;rank=1 scaffold_89 . repeat_region 231409 231461 . ? . description=trf scaffold_89 . repeat_region 235931 235974 . ? . description=trf scaffold_89 . repeat_region 236962 237086 . ? . description=trf scaffold_89 . repeat_region 236981 237102 . ? . description=trf scaffold_89 ensembl protein_coding_gene 231833 233344 . - . ID=Physo109312;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_890001;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 231833 233344 . - . ID=Physo109312;Parent=Physo109312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 231833 233344 . - 0 ID=Physo109312;Parent=Physo109312;rank=1 scaffold_89 . exon 231833 233344 . - . ID=Physo109312.1;Parent=Physo109312;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 233461 235920 . - . ID=Physo140766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890043;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 233461 235920 . - . ID=Physo140766;Parent=Physo140766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 233461 234659 . - . ID=Physo140766.3;Parent=Physo140766;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_89 . CDS 233462 234659 . - 0 ID=Physo140766;Parent=Physo140766;rank=3 scaffold_89 . CDS 234785 235758 . - 0 ID=Physo140766;Parent=Physo140766;rank=2 scaffold_89 . exon 234785 235758 . - . ID=Physo140766.2;Parent=Physo140766;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_89 . CDS 235813 235920 . - 0 ID=Physo140766;Parent=Physo140766;rank=1 scaffold_89 . exon 235813 235920 . - . ID=Physo140766.1;Parent=Physo140766;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 238488 239940 . + . ID=Physo140767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890044;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 238488 239940 . + . ID=Physo140767;Parent=Physo140767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 238488 238799 . + . ID=Physo140767.1;Parent=Physo140767;constitutive=1;ensembl_phase=-1;rank=1 scaffold_89 . CDS 238575 238799 . + 0 ID=Physo140767;Parent=Physo140767;rank=1 scaffold_89 . CDS 239193 239318 . + 0 ID=Physo140767;Parent=Physo140767;rank=2 scaffold_89 . exon 239193 239318 . + . ID=Physo140767.2;Parent=Physo140767;constitutive=1;rank=2 scaffold_89 . CDS 239359 239940 . + 0 ID=Physo140767;Parent=Physo140767;rank=3 scaffold_89 . exon 239359 239940 . + . ID=Physo140767.3;Parent=Physo140767;constitutive=1;rank=3 scaffold_89 . biological_region 241274 241279 0.999 - . logic_name=eponine scaffold_89 . biological_region 247203 247205 0.999 + . logic_name=eponine scaffold_89 . biological_region 247704 247708 0.999 + . logic_name=eponine scaffold_89 . biological_region 248044 248053 0.999 + . logic_name=eponine scaffold_89 . biological_region 248249 248250 0.999 - . logic_name=eponine scaffold_89 . biological_region 248447 248450 0.999 + . logic_name=eponine scaffold_89 ensembl protein_coding_gene 240593 241261 . - . ID=Physo140768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890045;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 240593 241261 . - . ID=Physo140768;Parent=Physo140768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 240593 241261 . - 0 ID=Physo140768;Parent=Physo140768;rank=1 scaffold_89 . exon 240593 241261 . - . ID=Physo140768.1;Parent=Physo140768;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 241569 242222 . - . ID=Physo140769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890046;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 241569 242222 . - . ID=Physo140769;Parent=Physo140769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 241569 242222 . - 0 ID=Physo140769;Parent=Physo140769;rank=1 scaffold_89 . exon 241569 242222 . - . ID=Physo140769.1;Parent=Physo140769;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 242865 243624 . - . ID=Physo140770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890047;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 242865 243624 . - . ID=Physo140770;Parent=Physo140770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 242865 243624 . - . ID=Physo140770.1;Parent=Physo140770;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_89 . CDS 242910 243602 . - 0 ID=Physo140770;Parent=Physo140770;rank=1 scaffold_89 ensembl protein_coding_gene 243767 244611 . - . ID=Physo140771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890048;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 243767 244611 . - . ID=Physo140771;Parent=Physo140771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 243767 244611 . - . ID=Physo140771.1;Parent=Physo140771;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_89 . CDS 243876 244577 . - 0 ID=Physo140771;Parent=Physo140771;rank=1 scaffold_89 ensembl protein_coding_gene 245742 247526 . - . ID=Physo140772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890049;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 245742 247526 . - . ID=Physo140772;Parent=Physo140772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 245742 247487 . - 0 ID=Physo140772;Parent=Physo140772;rank=1 scaffold_89 . exon 245742 247526 . - . ID=Physo140772.1;Parent=Physo140772;constitutive=1;ensembl_phase=-1;rank=1 scaffold_89 ensembl protein_coding_gene 248212 250596 . + . ID=Physo140773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890050;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 248212 250596 . + . ID=Physo140773;Parent=Physo140773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 248212 248330 . + 0 ID=Physo140773;Parent=Physo140773;rank=1 scaffold_89 . exon 248212 248330 . + . ID=Physo140773.1;Parent=Physo140773;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 248408 249852 . + 0 ID=Physo140773;Parent=Physo140773;rank=2 scaffold_89 . exon 248408 249852 . + . ID=Physo140773.2;Parent=Physo140773;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 249941 250008 . + 0 ID=Physo140773;Parent=Physo140773;rank=3 scaffold_89 . CDS 250080 250239 . + 0 ID=Physo140773;Parent=Physo140773;rank=4 scaffold_89 . CDS 250305 250558 . + 0 ID=Physo140773;Parent=Physo140773;rank=5 scaffold_89 . repeat_region 251509 251539 . ? . description=dust scaffold_89 . repeat_region 252196 252287 . ? . description=dust scaffold_89 . repeat_region 252424 252450 . ? . description=trf scaffold_89 ensembl protein_coding_gene 250695 251719 . - . ID=Physo109313;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_890002;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 250695 251719 . - . ID=Physo109313;Parent=Physo109313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 250695 251009 . - . ID=Physo109313.4;Parent=Physo109313;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_89 . CDS 250736 251009 . - 0 ID=Physo109313;Parent=Physo109313;rank=4 scaffold_89 . CDS 251090 251302 . - 0 ID=Physo109313;Parent=Physo109313;rank=3 scaffold_89 . exon 251090 251302 . - . ID=Physo109313.3;Parent=Physo109313;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_89 . CDS 251410 251500 . - 0 ID=Physo109313;Parent=Physo109313;rank=2 scaffold_89 . exon 251410 251500 . - . ID=Physo109313.2;Parent=Physo109313;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_89 . CDS 251627 251645 . - 0 ID=Physo109313;Parent=Physo109313;rank=1 scaffold_89 . exon 251627 251719 . - . ID=Physo109313.1;Parent=Physo109313;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_89 . exon 249941 250008 . + . ID=Physo140773.3;Parent=Physo140773;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . exon 250080 250239 . + . ID=Physo140773.4;Parent=Physo140773;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_89 . exon 250305 250596 . + . ID=Physo140773.5;Parent=Physo140773;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_89 ensembl protein_coding_gene 251872 256906 . + . ID=Physo140775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890052;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 251872 256906 . + . ID=Physo140775;Parent=Physo140775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 251872 252008 . + 0 ID=Physo140775;Parent=Physo140775;rank=1 scaffold_89 . exon 251872 252008 . + . ID=Physo140775.1;Parent=Physo140775;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 252090 252515 . + 0 ID=Physo140775;Parent=Physo140775;rank=2 scaffold_89 . exon 252090 252515 . + . ID=Physo140775.2;Parent=Physo140775;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_89 . CDS 252751 253666 . + 0 ID=Physo140775;Parent=Physo140775;rank=3 scaffold_89 . exon 252751 253666 . + . ID=Physo140775.3;Parent=Physo140775;constitutive=1;ensembl_phase=2;rank=3 scaffold_89 . CDS 253722 253739 . + 0 ID=Physo140775;Parent=Physo140775;rank=4 scaffold_89 . exon 253722 253739 . + . ID=Physo140775.4;Parent=Physo140775;constitutive=1;rank=4 scaffold_89 . CDS 254045 255612 . + 0 ID=Physo140775;Parent=Physo140775;rank=5 scaffold_89 . exon 254045 255612 . + . ID=Physo140775.5;Parent=Physo140775;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_89 . CDS 255697 255917 . + 0 ID=Physo140775;Parent=Physo140775;rank=6 scaffold_89 . exon 255697 255917 . + . ID=Physo140775.6;Parent=Physo140775;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_89 . CDS 255990 256906 . + 0 ID=Physo140775;Parent=Physo140775;rank=7 scaffold_89 . exon 255990 256906 . + . ID=Physo140775.7;Parent=Physo140775;constitutive=1;ensembl_phase=1;rank=7 scaffold_89 ensembl protein_coding_gene 257225 258750 . + . ID=Physo140776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890053;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 257225 258750 . + . ID=Physo140776;Parent=Physo140776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 257225 258673 . + 0 ID=Physo140776;Parent=Physo140776;rank=1 scaffold_89 . exon 257225 258673 . + . ID=Physo140776.1;Parent=Physo140776;constitutive=1;rank=1 scaffold_89 . CDS 258697 258750 . + 0 ID=Physo140776;Parent=Physo140776;rank=2 scaffold_89 . exon 258697 258750 . + . ID=Physo140776.2;Parent=Physo140776;constitutive=1;rank=2 scaffold_89 . biological_region 261388 261391 0.999 + . logic_name=eponine scaffold_89 . biological_region 261408 261411 0.999 - . logic_name=eponine scaffold_89 . biological_region 262090 262092 0.999 + . logic_name=eponine scaffold_89 . biological_region 262163 262167 0.999 + . logic_name=eponine scaffold_89 . biological_region 262203 262205 0.999 - . logic_name=eponine scaffold_89 . repeat_region 262538 262647 . + . description=(CGA)n scaffold_89 . biological_region 264126 264129 0.999 - . logic_name=eponine scaffold_89 . biological_region 267598 267601 0.999 + . logic_name=eponine scaffold_89 ensembl protein_coding_gene 261500 262785 . + . ID=Physo140777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890054;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 261500 262785 . + . ID=Physo140777;Parent=Physo140777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 261500 261961 . + . ID=Physo140777.1;Parent=Physo140777;constitutive=1;ensembl_phase=-1;rank=1 scaffold_89 . CDS 261938 261961 . + 0 ID=Physo140777;Parent=Physo140777;rank=1 scaffold_89 . CDS 262085 262634 . + 0 ID=Physo140777;Parent=Physo140777;rank=2 scaffold_89 . exon 262085 262634 . + . ID=Physo140777.2;Parent=Physo140777;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_89 . CDS 262754 262785 . + 0 ID=Physo140777;Parent=Physo140777;rank=3 scaffold_89 . exon 262754 262785 . + . ID=Physo140777.3;Parent=Physo140777;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 ensembl protein_coding_gene 263908 265075 . + . ID=Physo140778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890055;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 263908 265075 . + . ID=Physo140778;Parent=Physo140778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 263908 264187 . + 0 ID=Physo140778;Parent=Physo140778;rank=1 scaffold_89 . exon 263908 264187 . + . ID=Physo140778.1;Parent=Physo140778;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . CDS 264267 264721 . + 0 ID=Physo140778;Parent=Physo140778;rank=2 scaffold_89 . exon 264267 264721 . + . ID=Physo140778.2;Parent=Physo140778;constitutive=1;ensembl_phase=1;rank=2 scaffold_89 . CDS 264788 265075 . + 0 ID=Physo140778;Parent=Physo140778;rank=3 scaffold_89 . exon 264788 265075 . + . ID=Physo140778.3;Parent=Physo140778;constitutive=1;rank=3 scaffold_89 ensembl protein_coding_gene 267436 268704 . - . ID=Physo140779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890056;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 267436 268704 . - . ID=Physo140779;Parent=Physo140779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 267436 268704 . - 0 ID=Physo140779;Parent=Physo140779;rank=1 scaffold_89 . exon 267436 268704 . - . ID=Physo140779.1;Parent=Physo140779;constitutive=1;rank=1 scaffold_89 . repeat_region 269791 269887 . ? . description=trf scaffold_89 . repeat_region 273626 273675 . ? . description=dust scaffold_89 . repeat_region 274850 291400 . ? . description=dust scaffold_89 ensembl protein_coding_gene 272111 273005 . + . ID=Physo140780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890057;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 272111 273005 . + . ID=Physo140780;Parent=Physo140780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 272111 272418 . + 0 ID=Physo140780;Parent=Physo140780;rank=1 scaffold_89 . exon 272111 272418 . + . ID=Physo140780.1;Parent=Physo140780;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 272636 272889 . + 0 ID=Physo140780;Parent=Physo140780;rank=2 scaffold_89 . exon 272636 272889 . + . ID=Physo140780.2;Parent=Physo140780;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 272992 273005 . + 0 ID=Physo140780;Parent=Physo140780;rank=3 scaffold_89 . exon 272992 273005 . + . ID=Physo140780.3;Parent=Physo140780;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . repeat_region 274850 291400 . ? . description=dust scaffold_89 . repeat_region 291401 292968 . ? . description=dust scaffold_89 . repeat_region 295170 295179 . ? . description=dust scaffold_89 . repeat_region 296285 296322 . ? . description=dust scaffold_89 . repeat_region 296289 296322 . ? . description=trf scaffold_89 . biological_region 296466 296469 0.999 + . logic_name=eponine scaffold_89 . biological_region 296620 296623 0.999 - . logic_name=eponine scaffold_89 . biological_region 297383 297384 0.999 + . logic_name=eponine scaffold_89 . biological_region 297566 297566 0.999 + . logic_name=eponine scaffold_89 . biological_region 297609 297609 0.999 + . logic_name=eponine scaffold_89 . repeat_region 298387 298394 . ? . description=dust scaffold_89 ensembl protein_coding_gene 296252 297701 . + . ID=Physo109314;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_890003;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 296252 297701 . + . ID=Physo109314;Parent=Physo109314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 296252 297701 . + . ID=Physo109314.1;Parent=Physo109314;constitutive=1;ensembl_phase=-1;rank=1 scaffold_89 . CDS 296346 297701 . + 0 ID=Physo109314;Parent=Physo109314;rank=1 scaffold_89 ensembl protein_coding_gene 292969 293229 . + . ID=Physo121229;biotype=protein_coding;external_name=estExt_Genewise1.C_890002;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 292969 293229 . + . ID=Physo121229;Parent=Physo121229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 292969 293229 . + . ID=Physo121229.1;Parent=Physo121229;constitutive=1;ensembl_phase=-1;rank=1 scaffold_89 . CDS 293011 293229 . + 0 ID=Physo121229;Parent=Physo121229;rank=1 scaffold_89 ensembl protein_coding_gene 298958 300341 . + . ID=Physo140782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890059;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 298958 300341 . + . ID=Physo140782;Parent=Physo140782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 298958 299116 . + 0 ID=Physo140782;Parent=Physo140782;rank=1 scaffold_89 . exon 298958 299116 . + . ID=Physo140782.1;Parent=Physo140782;constitutive=1;rank=1 scaffold_89 . CDS 299160 300341 . + 0 ID=Physo140782;Parent=Physo140782;rank=2 scaffold_89 . exon 299160 300341 . + . ID=Physo140782.2;Parent=Physo140782;constitutive=1;rank=2 scaffold_89 ensembl protein_coding_gene 300507 301216 . - . ID=Physo140783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890060;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 300507 301216 . - . ID=Physo140783;Parent=Physo140783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 300507 300773 . - 0 ID=Physo140783;Parent=Physo140783;rank=3 scaffold_89 . exon 300507 300773 . - . ID=Physo140783.3;Parent=Physo140783;constitutive=1;rank=3 scaffold_89 . CDS 300878 301175 . - 0 ID=Physo140783;Parent=Physo140783;rank=2 scaffold_89 . exon 300878 301175 . - . ID=Physo140783.2;Parent=Physo140783;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 301206 301216 . - 0 ID=Physo140783;Parent=Physo140783;rank=1 scaffold_89 . exon 301206 301216 . - . ID=Physo140783.1;Parent=Physo140783;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 ensembl protein_coding_gene 301836 303039 . + . ID=Physo140784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890061;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 301836 303039 . + . ID=Physo140784;Parent=Physo140784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 301836 302034 . + 0 ID=Physo140784;Parent=Physo140784;rank=1 scaffold_89 . exon 301836 302034 . + . ID=Physo140784.1;Parent=Physo140784;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_89 . CDS 302120 303039 . + 0 ID=Physo140784;Parent=Physo140784;rank=2 scaffold_89 . exon 302120 303039 . + . ID=Physo140784.2;Parent=Physo140784;constitutive=1;ensembl_phase=1;rank=2 scaffold_89 ensembl protein_coding_gene 303193 304246 . + . ID=Physo140785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890062;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 303193 304246 . + . ID=Physo140785;Parent=Physo140785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 303193 303297 . + 0 ID=Physo140785;Parent=Physo140785;rank=1 scaffold_89 . exon 303193 303297 . + . ID=Physo140785.1;Parent=Physo140785;constitutive=1;rank=1 scaffold_89 . CDS 303364 303442 . + 0 ID=Physo140785;Parent=Physo140785;rank=2 scaffold_89 . exon 303364 303442 . + . ID=Physo140785.2;Parent=Physo140785;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_89 . CDS 303534 304144 . + 0 ID=Physo140785;Parent=Physo140785;rank=3 scaffold_89 . exon 303534 304246 . + . ID=Physo140785.3;Parent=Physo140785;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_89 ensembl protein_coding_gene 304347 306134 . - . ID=Physo140786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890063;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 304347 306134 . - . ID=Physo140786;Parent=Physo140786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 304347 306134 . - 0 ID=Physo140786;Parent=Physo140786;rank=1 scaffold_89 . exon 304347 306134 . - . ID=Physo140786.1;Parent=Physo140786;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 306361 306708 . - . ID=Physo140787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890064;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 306361 306708 . - . ID=Physo140787;Parent=Physo140787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 306361 306708 . - 0 ID=Physo140787;Parent=Physo140787;rank=1 scaffold_89 . exon 306361 306708 . - . ID=Physo140787.1;Parent=Physo140787;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 307236 308867 . + . ID=Physo140788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890065;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 307236 308867 . + . ID=Physo140788;Parent=Physo140788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 307236 307414 . + 0 ID=Physo140788;Parent=Physo140788;rank=1 scaffold_89 . exon 307236 307414 . + . ID=Physo140788.1;Parent=Physo140788;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . CDS 307488 307578 . + 0 ID=Physo140788;Parent=Physo140788;rank=2 scaffold_89 . exon 307488 307578 . + . ID=Physo140788.2;Parent=Physo140788;constitutive=1;ensembl_phase=2;rank=2 scaffold_89 . CDS 307647 307848 . + 0 ID=Physo140788;Parent=Physo140788;rank=3 scaffold_89 . exon 307647 307848 . + . ID=Physo140788.3;Parent=Physo140788;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_89 . CDS 307924 308589 . + 0 ID=Physo140788;Parent=Physo140788;rank=4 scaffold_89 . exon 307924 308589 . + . ID=Physo140788.4;Parent=Physo140788;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_89 . CDS 308659 308867 . + 0 ID=Physo140788;Parent=Physo140788;rank=5 scaffold_89 . exon 308659 308867 . + . ID=Physo140788.5;Parent=Physo140788;constitutive=1;ensembl_phase=1;rank=5 scaffold_89 ensembl protein_coding_gene 309065 311407 . - . ID=Physo140789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890066;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 309065 311407 . - . ID=Physo140789;Parent=Physo140789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 309065 309663 . - 0 ID=Physo140789;Parent=Physo140789;rank=3 scaffold_89 . exon 309065 309663 . - . ID=Physo140789.3;Parent=Physo140789;constitutive=1;ensembl_phase=1;rank=3 scaffold_89 . CDS 309790 310007 . - 0 ID=Physo140789;Parent=Physo140789;rank=2 scaffold_89 . CDS 310230 311407 . - 0 ID=Physo140789;Parent=Physo140789;rank=1 scaffold_89 . repeat_region 310756 310775 . ? . description=trf scaffold_89 . repeat_region 311712 311728 . ? . description=dust scaffold_89 . biological_region 314929 314932 0.999 - . logic_name=eponine scaffold_89 . biological_region 316717 316717 0.999 - . logic_name=eponine scaffold_89 . biological_region 316940 316943 0.999 - . logic_name=eponine scaffold_89 . biological_region 317194 317196 0.999 + . logic_name=eponine scaffold_89 . exon 309790 310007 . - . ID=Physo140789.2;Parent=Physo140789;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_89 . exon 310230 311407 . - . ID=Physo140789.1;Parent=Physo140789;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 ensembl protein_coding_gene 314697 317396 . - . ID=Physo140790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890067;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 314697 317396 . - . ID=Physo140790;Parent=Physo140790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 314697 317396 . - 0 ID=Physo140790;Parent=Physo140790;rank=1 scaffold_89 . exon 314697 317396 . - . ID=Physo140790.1;Parent=Physo140790;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 318676 321246 . - . ID=Physo140791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890068;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 318676 321246 . - . ID=Physo140791;Parent=Physo140791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 318676 321246 . - 0 ID=Physo140791;Parent=Physo140791;rank=1 scaffold_89 . exon 318676 321246 . - . ID=Physo140791.1;Parent=Physo140791;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 321858 324758 . - . ID=Physo140792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890069;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 321858 324758 . - . ID=Physo140792;Parent=Physo140792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 321858 324758 . - 0 ID=Physo140792;Parent=Physo140792;rank=1 scaffold_89 . exon 321858 324758 . - . ID=Physo140792.1;Parent=Physo140792;constitutive=1;rank=1 scaffold_89 ensembl protein_coding_gene 326482 327181 . - . ID=Physo140793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890070;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 326482 327181 . - . ID=Physo140793;Parent=Physo140793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . exon 326482 326950 . - . ID=Physo140793.2;Parent=Physo140793;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_89 . CDS 326869 326950 . - 0 ID=Physo140793;Parent=Physo140793;rank=2 scaffold_89 . CDS 327042 327181 . - 0 ID=Physo140793;Parent=Physo140793;rank=1 scaffold_89 . exon 327042 327181 . - . ID=Physo140793.1;Parent=Physo140793;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_89 . repeat_region 327227 333528 . ? . description=dust scaffold_89 . repeat_region 333536 334219 . + . description=GypsyPi-1c_I-int scaffold_89 . repeat_region 334249 334298 . ? . description=dust scaffold_89 . repeat_region 334309 335052 . + . description=GypsyPi-1c_I-int scaffold_89 . repeat_region 335154 335251 . ? . description=dust scaffold_89 . biological_region 335668 335670 0.999 + . logic_name=eponine scaffold_89 . repeat_region 336268 336365 . + . description=GypsyPi-1c_I-int scaffold_89 . repeat_region 336366 336432 . ? . description=dust scaffold_89 . biological_region 337416 337417 0.999 - . logic_name=eponine scaffold_89 . biological_region 337434 337442 0.999 - . logic_name=eponine scaffold_89 ensembl protein_coding_gene 335592 336553 . + . ID=Physo140794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890071;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 335592 336553 . + . ID=Physo140794;Parent=Physo140794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 335592 335798 . + 0 ID=Physo140794;Parent=Physo140794;rank=1 scaffold_89 . exon 335592 335798 . + . ID=Physo140794.1;Parent=Physo140794;constitutive=1;rank=1 scaffold_89 . CDS 335843 336360 . + 0 ID=Physo140794;Parent=Physo140794;rank=2 scaffold_89 . exon 335843 336360 . + . ID=Physo140794.2;Parent=Physo140794;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_89 . CDS 336487 336553 . + 0 ID=Physo140794;Parent=Physo140794;rank=3 scaffold_89 . exon 336487 336553 . + . ID=Physo140794.3;Parent=Physo140794;constitutive=1;ensembl_phase=2;rank=3 scaffold_89 ensembl protein_coding_gene 338170 340298 . + . ID=Physo140795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_890072;logic_name=jgi_physo1_1 scaffold_89 ensembl transcript 338170 340298 . + . ID=Physo140795;Parent=Physo140795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_89 . CDS 338170 338415 . + 0 ID=Physo140795;Parent=Physo140795;rank=1 scaffold_89 . exon 338170 338415 . + . ID=Physo140795.1;Parent=Physo140795;constitutive=1;rank=1 scaffold_89 . CDS 338505 340298 . + 0 ID=Physo140795;Parent=Physo140795;rank=2 scaffold_89 . exon 338505 340298 . + . ID=Physo140795.2;Parent=Physo140795;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_87 1 350532 scaffold_87 . biological_region 1253 1254 0.999 - . logic_name=eponine scaffold_87 . biological_region 2452 2453 0.999 + . logic_name=eponine scaffold_87 . repeat_region 5562 5608 . ? . description=trf scaffold_87 . repeat_region 7112 7152 . ? . description=trf scaffold_87 ensembl protein_coding_gene 24 3802 . + . ID=Physo140554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870001;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 24 3802 . + . ID=Physo140554;Parent=Physo140554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 24 236 . + 0 ID=Physo140554;Parent=Physo140554;rank=1 scaffold_87 . exon 24 236 . + . ID=Physo140554.1;Parent=Physo140554;constitutive=1;rank=1 scaffold_87 . CDS 323 1667 . + 0 ID=Physo140554;Parent=Physo140554;rank=2 scaffold_87 . exon 323 1667 . + . ID=Physo140554.2;Parent=Physo140554;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_87 . CDS 1701 3802 . + 0 ID=Physo140554;Parent=Physo140554;rank=3 scaffold_87 . exon 1701 3802 . + . ID=Physo140554.3;Parent=Physo140554;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 . repeat_region 14996 16851 . ? . description=dust scaffold_87 . repeat_region 29213 32273 . ? . description=dust scaffold_87 . biological_region 32576 32578 0.999 + . logic_name=eponine scaffold_87 . biological_region 32907 32912 0.999 - . logic_name=eponine scaffold_87 . biological_region 36922 36925 0.999 + . logic_name=eponine scaffold_87 . biological_region 37103 37104 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 32274 33085 . + . ID=Physo140555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870002;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 32274 33085 . + . ID=Physo140555;Parent=Physo140555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 32274 32679 . + . ID=Physo140555.1;Parent=Physo140555;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_87 . CDS 32285 32679 . + 0 ID=Physo140555;Parent=Physo140555;rank=1 scaffold_87 . CDS 32869 33085 . + 0 ID=Physo140555;Parent=Physo140555;rank=2 scaffold_87 . exon 32869 33085 . + . ID=Physo140555.2;Parent=Physo140555;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 ensembl protein_coding_gene 33378 34509 . - . ID=Physo140556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870003;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 33378 34509 . - . ID=Physo140556;Parent=Physo140556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 33378 33647 . - 0 ID=Physo140556;Parent=Physo140556;rank=5 scaffold_87 . exon 33378 33647 . - . ID=Physo140556.5;Parent=Physo140556;constitutive=1;rank=5 scaffold_87 . CDS 33683 33840 . - 0 ID=Physo140556;Parent=Physo140556;rank=4 scaffold_87 . exon 33683 33840 . - . ID=Physo140556.4;Parent=Physo140556;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 33925 34134 . - 0 ID=Physo140556;Parent=Physo140556;rank=3 scaffold_87 . exon 33925 34134 . - . ID=Physo140556.3;Parent=Physo140556;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 34172 34354 . - 0 ID=Physo140556;Parent=Physo140556;rank=2 scaffold_87 . exon 34172 34354 . - . ID=Physo140556.2;Parent=Physo140556;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 34419 34509 . - 0 ID=Physo140556;Parent=Physo140556;rank=1 scaffold_87 . exon 34419 34509 . - . ID=Physo140556.1;Parent=Physo140556;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 ensembl protein_coding_gene 35741 38758 . - . ID=Physo140557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870004;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 35741 38758 . - . ID=Physo140557;Parent=Physo140557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 35741 36382 . - 0 ID=Physo140557;Parent=Physo140557;rank=6 scaffold_87 . exon 35741 36382 . - . ID=Physo140557.6;Parent=Physo140557;constitutive=1;rank=6 scaffold_87 . CDS 36460 36704 . - 0 ID=Physo140557;Parent=Physo140557;rank=5 scaffold_87 . exon 36460 36704 . - . ID=Physo140557.5;Parent=Physo140557;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 . CDS 36792 36855 . - 0 ID=Physo140557;Parent=Physo140557;rank=4 scaffold_87 . exon 36792 36855 . - . ID=Physo140557.4;Parent=Physo140557;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_87 . CDS 36946 37101 . - 0 ID=Physo140557;Parent=Physo140557;rank=3 scaffold_87 . exon 36946 37101 . - . ID=Physo140557.3;Parent=Physo140557;constitutive=1;rank=3 scaffold_87 . CDS 37266 38193 . - 0 ID=Physo140557;Parent=Physo140557;rank=2 scaffold_87 . exon 37266 38193 . - . ID=Physo140557.2;Parent=Physo140557;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 38265 38758 . - 0 ID=Physo140557;Parent=Physo140557;rank=1 scaffold_87 . exon 38265 38758 . - . ID=Physo140557.1;Parent=Physo140557;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . repeat_region 45756 45849 . ? . description=trf scaffold_87 . repeat_region 45774 45855 . ? . description=trf scaffold_87 . repeat_region 45839 45872 . ? . description=trf scaffold_87 . repeat_region 45842 45868 . ? . description=trf scaffold_87 . repeat_region 48295 48414 . ? . description=trf scaffold_87 . repeat_region 48406 48444 . ? . description=trf scaffold_87 ensembl protein_coding_gene 42411 43652 . + . ID=Physo121115;biotype=protein_coding;external_name=estExt_Genewise1.C_870016;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 42411 43652 . + . ID=Physo121115;Parent=Physo121115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 42411 43652 . + . ID=Physo121115.1;Parent=Physo121115;constitutive=1;ensembl_phase=-1;rank=1 scaffold_87 . CDS 42492 43652 . + 0 ID=Physo121115;Parent=Physo121115;rank=1 scaffold_87 ensembl protein_coding_gene 44024 46099 . + . ID=Physo121120;biotype=protein_coding;external_name=estExt_Genewise1.C_870021;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 44024 46099 . + . ID=Physo121120;Parent=Physo121120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 44024 46099 . + . ID=Physo121120.1;Parent=Physo121120;constitutive=1;ensembl_phase=-1;rank=1 scaffold_87 . CDS 44105 46099 . + 0 ID=Physo121120;Parent=Physo121120;rank=1 scaffold_87 ensembl protein_coding_gene 39413 41128 . - . ID=Physo140558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870005;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 39413 41128 . - . ID=Physo140558;Parent=Physo140558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 39413 41128 . - 0 ID=Physo140558;Parent=Physo140558;rank=1 scaffold_87 . exon 39413 41128 . - . ID=Physo140558.1;Parent=Physo140558;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 46691 49109 . - . ID=Physo140560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870007;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 46691 49109 . - . ID=Physo140560;Parent=Physo140560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 46691 46757 . - 0 ID=Physo140560;Parent=Physo140560;rank=6 scaffold_87 . exon 46691 46757 . - . ID=Physo140560.6;Parent=Physo140560;constitutive=1;ensembl_phase=2;rank=6 scaffold_87 . CDS 46846 47041 . - 0 ID=Physo140560;Parent=Physo140560;rank=5 scaffold_87 . exon 46846 47041 . - . ID=Physo140560.5;Parent=Physo140560;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_87 . CDS 47123 47193 . - 0 ID=Physo140560;Parent=Physo140560;rank=4 scaffold_87 . exon 47123 47193 . - . ID=Physo140560.4;Parent=Physo140560;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_87 . CDS 47264 47334 . - 0 ID=Physo140560;Parent=Physo140560;rank=3 scaffold_87 . exon 47264 47334 . - . ID=Physo140560.3;Parent=Physo140560;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_87 . CDS 47407 48808 . - 0 ID=Physo140560;Parent=Physo140560;rank=2 scaffold_87 . exon 47407 48808 . - . ID=Physo140560.2;Parent=Physo140560;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 48910 49109 . - 0 ID=Physo140560;Parent=Physo140560;rank=1 scaffold_87 . biological_region 48842 48845 0.999 + . logic_name=eponine scaffold_87 . biological_region 49949 49950 0.999 + . logic_name=eponine scaffold_87 . repeat_region 50528 50554 . ? . description=dust scaffold_87 . biological_region 57460 57462 0.999 + . logic_name=eponine scaffold_87 . repeat_region 57527 57537 . ? . description=dust scaffold_87 ensembl protein_coding_gene 49375 50906 . + . ID=Physo109304;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_870001;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 49375 50906 . + . ID=Physo109304;Parent=Physo109304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 49375 50906 . + . ID=Physo109304.1;Parent=Physo109304;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_87 . CDS 49389 50570 . + 0 ID=Physo109304;Parent=Physo109304;rank=1 scaffold_87 . exon 48910 49109 . - . ID=Physo140560.1;Parent=Physo140560;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 50979 54152 . - . ID=Physo140562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870009;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 50979 54152 . - . ID=Physo140562;Parent=Physo140562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 50979 54152 . - 0 ID=Physo140562;Parent=Physo140562;rank=1 scaffold_87 . exon 50979 54152 . - . ID=Physo140562.1;Parent=Physo140562;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 54692 57178 . - . ID=Physo140563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870010;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 54692 57178 . - . ID=Physo140563;Parent=Physo140563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 54692 57178 . - 0 ID=Physo140563;Parent=Physo140563;rank=1 scaffold_87 . exon 54692 57178 . - . ID=Physo140563.1;Parent=Physo140563;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 58250 59614 . + . ID=Physo140564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870011;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 58250 59614 . + . ID=Physo140564;Parent=Physo140564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 58250 59614 . + 0 ID=Physo140564;Parent=Physo140564;rank=1 scaffold_87 . exon 58250 59614 . + . ID=Physo140564.1;Parent=Physo140564;constitutive=1;rank=1 scaffold_87 . repeat_region 64116 64140 . ? . description=trf scaffold_87 . repeat_region 65404 65442 . ? . description=trf scaffold_87 . repeat_region 66674 66704 . ? . description=trf scaffold_87 ensembl protein_coding_gene 59837 63709 . - . ID=Physo121139;biotype=protein_coding;external_name=estExt_Genewise1.C_870040;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 59837 63709 . - . ID=Physo121139;Parent=Physo121139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 59837 62896 . - 0 ID=Physo121139;Parent=Physo121139;rank=2 scaffold_87 . exon 59837 62896 . - . ID=Physo121139.2;Parent=Physo121139;constitutive=1;rank=2 scaffold_87 . CDS 63245 63610 . - 0 ID=Physo121139;Parent=Physo121139;rank=1 scaffold_87 . exon 63245 63709 . - . ID=Physo121139.1;Parent=Physo121139;constitutive=1;ensembl_phase=-1;rank=1 scaffold_87 . repeat_region 70635 70863 . ? . description=dust scaffold_87 . repeat_region 72506 72555 . ? . description=dust scaffold_87 . repeat_region 72785 72795 . ? . description=dust scaffold_87 . repeat_region 75002 75009 . ? . description=dust scaffold_87 ensembl protein_coding_gene 70157 70594 . - . ID=Physo140566;biotype=protein_coding;description=PsAvh235a1PsAvh235a2PsAvh235a3 [Source:UniProtKB/TrEMBL%3BAcc:E0W5H7];external_name=estExt_fgenesh1_pg.C_870013;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 70157 70594 . - . ID=Physo140566;Parent=Physo140566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 70157 70594 . - 0 ID=Physo140566;Parent=Physo140566;rank=1 scaffold_87 . exon 70157 70594 . - . ID=Physo140566.1;Parent=Physo140566;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 71971 72408 . - . ID=Physo140567;biotype=protein_coding;description=PsAvh235a1PsAvh235a2PsAvh235a3 [Source:UniProtKB/TrEMBL%3BAcc:E0W5H7];external_name=estExt_fgenesh1_pg.C_870014;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 71971 72408 . - . ID=Physo140567;Parent=Physo140567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 71971 72408 . - 0 ID=Physo140567;Parent=Physo140567;rank=1 scaffold_87 . exon 71971 72408 . - . ID=Physo140567.1;Parent=Physo140567;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 72920 73357 . + . ID=Physo140568;biotype=protein_coding;description=PsAvh235a1PsAvh235a2PsAvh235a3 [Source:UniProtKB/TrEMBL%3BAcc:E0W5H7];external_name=estExt_fgenesh1_pg.C_870015;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 72920 73357 . + . ID=Physo140568;Parent=Physo140568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 72920 73357 . + 0 ID=Physo140568;Parent=Physo140568;rank=1 scaffold_87 . exon 72920 73357 . + . ID=Physo140568.1;Parent=Physo140568;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 73613 74107 . + . ID=Physo140569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870016;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 73613 74107 . + . ID=Physo140569;Parent=Physo140569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 73613 74107 . + 0 ID=Physo140569;Parent=Physo140569;rank=1 scaffold_87 . exon 73613 74107 . + . ID=Physo140569.1;Parent=Physo140569;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 74286 74931 . - . ID=Physo140570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870017;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 74286 74931 . - . ID=Physo140570;Parent=Physo140570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 74286 74294 . - 0 ID=Physo140570;Parent=Physo140570;rank=3 scaffold_87 . exon 74286 74294 . - . ID=Physo140570.3;Parent=Physo140570;constitutive=1;rank=3 scaffold_87 . CDS 74531 74702 . - 0 ID=Physo140570;Parent=Physo140570;rank=2 scaffold_87 . exon 74531 74702 . - . ID=Physo140570.2;Parent=Physo140570;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 74771 74931 . - 0 ID=Physo140570;Parent=Physo140570;rank=1 scaffold_87 . exon 74771 74931 . - . ID=Physo140570.1;Parent=Physo140570;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 75038 76647 . + . ID=Physo140571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870018;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 75038 76647 . + . ID=Physo140571;Parent=Physo140571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 75038 75191 . + . ID=Physo140571.1;Parent=Physo140571;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_87 . CDS 75091 75191 . + 0 ID=Physo140571;Parent=Physo140571;rank=1 scaffold_87 . CDS 75281 75340 . + 0 ID=Physo140571;Parent=Physo140571;rank=2 scaffold_87 . exon 75281 75340 . + . ID=Physo140571.2;Parent=Physo140571;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_87 . CDS 75420 75663 . + 0 ID=Physo140571;Parent=Physo140571;rank=3 scaffold_87 . exon 75420 75663 . + . ID=Physo140571.3;Parent=Physo140571;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 75741 75980 . + 0 ID=Physo140571;Parent=Physo140571;rank=4 scaffold_87 . exon 75741 75980 . + . ID=Physo140571.4;Parent=Physo140571;constitutive=1;rank=4 scaffold_87 . CDS 76052 76079 . + 0 ID=Physo140571;Parent=Physo140571;rank=5 scaffold_87 . exon 76052 76079 . + . ID=Physo140571.5;Parent=Physo140571;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_87 . CDS 76424 76647 . + 0 ID=Physo140571;Parent=Physo140571;rank=6 scaffold_87 . exon 76424 76647 . + . ID=Physo140571.6;Parent=Physo140571;constitutive=1;ensembl_phase=1;rank=6 scaffold_87 . biological_region 80557 80560 0.999 - . logic_name=eponine scaffold_87 . biological_region 81388 81391 0.999 + . logic_name=eponine scaffold_87 . biological_region 83339 83342 0.999 + . logic_name=eponine scaffold_87 . biological_region 83994 83998 0.999 + . logic_name=eponine scaffold_87 . biological_region 84043 84047 0.999 + . logic_name=eponine scaffold_87 . biological_region 84210 84213 0.999 - . logic_name=eponine scaffold_87 . biological_region 85048 85051 0.999 + . logic_name=eponine scaffold_87 . biological_region 85121 85121 0.999 + . logic_name=eponine scaffold_87 . biological_region 85132 85138 0.999 - . logic_name=eponine scaffold_87 . biological_region 85589 85595 0.999 - . logic_name=eponine scaffold_87 . biological_region 86283 86285 0.999 - . logic_name=eponine scaffold_87 . biological_region 86547 86548 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 79895 81675 . + . ID=Physo140572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870019;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 79895 81675 . + . ID=Physo140572;Parent=Physo140572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 79895 80244 . + 0 ID=Physo140572;Parent=Physo140572;rank=1 scaffold_87 . exon 79895 80244 . + . ID=Physo140572.1;Parent=Physo140572;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 80320 80826 . + 0 ID=Physo140572;Parent=Physo140572;rank=2 scaffold_87 . exon 80320 80826 . + . ID=Physo140572.2;Parent=Physo140572;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_87 . CDS 80909 81153 . + 0 ID=Physo140572;Parent=Physo140572;rank=3 scaffold_87 . exon 80909 81153 . + . ID=Physo140572.3;Parent=Physo140572;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 81272 81675 . + 0 ID=Physo140572;Parent=Physo140572;rank=4 scaffold_87 . exon 81272 81675 . + . ID=Physo140572.4;Parent=Physo140572;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 ensembl protein_coding_gene 84402 85904 . + . ID=Physo140573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870020;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 84402 85904 . + . ID=Physo140573;Parent=Physo140573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 84402 85829 . + 0 ID=Physo140573;Parent=Physo140573;rank=1 scaffold_87 . exon 84402 85904 . + . ID=Physo140573.1;Parent=Physo140573;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_87 ensembl protein_coding_gene 85944 89980 . - . ID=Physo140574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870021;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 85944 89980 . - . ID=Physo140574;Parent=Physo140574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 85944 86669 . - 0 ID=Physo140574;Parent=Physo140574;rank=6 scaffold_87 . exon 85944 86669 . - . ID=Physo140574.6;Parent=Physo140574;constitutive=1;rank=6 scaffold_87 . CDS 86690 86950 . - 0 ID=Physo140574;Parent=Physo140574;rank=5 scaffold_87 . exon 86690 86950 . - . ID=Physo140574.5;Parent=Physo140574;constitutive=1;rank=5 scaffold_87 . CDS 87284 88462 . - 0 ID=Physo140574;Parent=Physo140574;rank=4 scaffold_87 . exon 87284 88462 . - . ID=Physo140574.4;Parent=Physo140574;constitutive=1;rank=4 scaffold_87 . CDS 88485 89032 . - 0 ID=Physo140574;Parent=Physo140574;rank=3 scaffold_87 . CDS 89227 89887 . - 0 ID=Physo140574;Parent=Physo140574;rank=2 scaffold_87 . CDS 89954 89980 . - 0 ID=Physo140574;Parent=Physo140574;rank=1 scaffold_87 . repeat_region 90554 90561 . ? . description=dust scaffold_87 ensembl protein_coding_gene 93514 94032 . - . ID=Physo121152;biotype=protein_coding;external_name=estExt_Genewise1.C_870053;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 93514 94032 . - . ID=Physo121152;Parent=Physo121152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 93514 93846 . - 0 ID=Physo121152;Parent=Physo121152;rank=1 scaffold_87 . exon 93514 94032 . - . ID=Physo121152.1;Parent=Physo121152;constitutive=1;ensembl_phase=-1;rank=1 scaffold_87 . exon 88485 89032 . - . ID=Physo140574.3;Parent=Physo140574;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 . exon 89227 89887 . - . ID=Physo140574.2;Parent=Physo140574;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_87 . exon 89954 89980 . - . ID=Physo140574.1;Parent=Physo140574;constitutive=1;rank=1 scaffold_87 . biological_region 98302 98308 0.999 + . logic_name=eponine scaffold_87 . biological_region 98325 98328 0.999 + . logic_name=eponine scaffold_87 . biological_region 98456 98457 0.999 + . logic_name=eponine scaffold_87 . repeat_region 98944 99224 . - . description=GypsyPi-1c_I-int scaffold_87 . repeat_region 99491 100739 . - . description=GypsyPi-1c_I-int scaffold_87 . repeat_region 101191 102338 . - . description=GypsyPi-1c_I-int scaffold_87 . biological_region 102655 102657 0.999 - . logic_name=eponine scaffold_87 . biological_region 102683 102684 0.999 - . logic_name=eponine scaffold_87 . biological_region 102868 102875 0.999 + . logic_name=eponine scaffold_87 . biological_region 102909 102911 0.999 + . logic_name=eponine scaffold_87 . biological_region 102935 102938 0.999 - . logic_name=eponine scaffold_87 . biological_region 103004 103007 0.999 - . logic_name=eponine scaffold_87 . repeat_region 103319 103361 . ? . description=trf scaffold_87 . repeat_region 103322 103352 . ? . description=trf scaffold_87 . biological_region 103366 103368 0.999 - . logic_name=eponine scaffold_87 . biological_region 103420 103423 0.999 + . logic_name=eponine scaffold_87 . biological_region 103440 103441 0.999 + . logic_name=eponine scaffold_87 . biological_region 105903 105904 0.999 + . logic_name=eponine scaffold_87 . biological_region 105910 105911 0.999 + . logic_name=eponine scaffold_87 . repeat_region 105923 106041 . ? . description=trf scaffold_87 . biological_region 105936 105941 0.999 - . logic_name=eponine scaffold_87 . biological_region 105945 105948 0.999 + . logic_name=eponine scaffold_87 . biological_region 105969 105974 0.999 + . logic_name=eponine scaffold_87 . biological_region 105979 105982 0.999 - . logic_name=eponine scaffold_87 . biological_region 105995 105996 0.999 + . logic_name=eponine scaffold_87 . biological_region 106155 106156 0.999 - . logic_name=eponine scaffold_87 . repeat_region 106265 106301 . ? . description=trf scaffold_87 ensembl tRNA_gene 106192 106261 . + . ID=EPrPSOG00000000250;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_87 ensembl transcript 106192 106261 . + . ID=EPrPSOT00000000250;Parent=EPrPSOG00000000250;biotype=tRNA;logic_name=ncrna_eg scaffold_87 . exon 106192 106261 . + . ID=EPrPSOE00000000250;Parent=EPrPSOT00000000250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 ensembl protein_coding_gene 98624 100850 . - . ID=Physo140575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870022;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 98624 100850 . - . ID=Physo140575;Parent=Physo140575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 98624 98878 . - 0 ID=Physo140575;Parent=Physo140575;rank=6 scaffold_87 . exon 98624 98878 . - . ID=Physo140575.6;Parent=Physo140575;constitutive=1;rank=6 scaffold_87 . CDS 99033 99091 . - 0 ID=Physo140575;Parent=Physo140575;rank=5 scaffold_87 . exon 99033 99091 . - . ID=Physo140575.5;Parent=Physo140575;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 . CDS 99137 100010 . - 0 ID=Physo140575;Parent=Physo140575;rank=4 scaffold_87 . exon 99137 100010 . - . ID=Physo140575.4;Parent=Physo140575;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_87 . CDS 100099 100115 . - 0 ID=Physo140575;Parent=Physo140575;rank=3 scaffold_87 . exon 100099 100115 . - . ID=Physo140575.3;Parent=Physo140575;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 100165 100728 . - 0 ID=Physo140575;Parent=Physo140575;rank=2 scaffold_87 . exon 100165 100728 . - . ID=Physo140575.2;Parent=Physo140575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 100835 100850 . - 0 ID=Physo140575;Parent=Physo140575;rank=1 scaffold_87 . exon 100835 100850 . - . ID=Physo140575.1;Parent=Physo140575;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 ensembl protein_coding_gene 101374 103050 . - . ID=Physo140576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870023;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 101374 103050 . - . ID=Physo140576;Parent=Physo140576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 101374 101730 . - 0 ID=Physo140576;Parent=Physo140576;rank=4 scaffold_87 . exon 101374 101730 . - . ID=Physo140576.4;Parent=Physo140576;constitutive=1;rank=4 scaffold_87 . CDS 101834 101865 . - 0 ID=Physo140576;Parent=Physo140576;rank=3 scaffold_87 . exon 101834 101865 . - . ID=Physo140576.3;Parent=Physo140576;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 101914 102566 . - 0 ID=Physo140576;Parent=Physo140576;rank=2 scaffold_87 . exon 101914 102566 . - . ID=Physo140576.2;Parent=Physo140576;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 102629 103050 . - 0 ID=Physo140576;Parent=Physo140576;rank=1 scaffold_87 . exon 102629 103050 . - . ID=Physo140576.1;Parent=Physo140576;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . repeat_region 110034 110041 . ? . description=dust scaffold_87 ensembl protein_coding_gene 112169 113671 . + . ID=Physo140577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870024;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 112169 113671 . + . ID=Physo140577;Parent=Physo140577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 112169 113671 . + 0 ID=Physo140577;Parent=Physo140577;rank=1 scaffold_87 . exon 112169 113671 . + . ID=Physo140577.1;Parent=Physo140577;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 114895 116316 . + . ID=Physo140578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870025;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 114895 116316 . + . ID=Physo140578;Parent=Physo140578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 114895 116316 . + 0 ID=Physo140578;Parent=Physo140578;rank=1 scaffold_87 . exon 114895 116316 . + . ID=Physo140578.1;Parent=Physo140578;constitutive=1;rank=1 scaffold_87 . repeat_region 122652 122702 . ? . description=trf scaffold_87 ensembl protein_coding_gene 117583 119010 . + . ID=Physo140579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870026;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 117583 119010 . + . ID=Physo140579;Parent=Physo140579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 117583 119010 . + 0 ID=Physo140579;Parent=Physo140579;rank=1 scaffold_87 . exon 117583 119010 . + . ID=Physo140579.1;Parent=Physo140579;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 120578 121024 . + . ID=Physo140580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870027;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 120578 121024 . + . ID=Physo140580;Parent=Physo140580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 120578 120804 . + 0 ID=Physo140580;Parent=Physo140580;rank=1 scaffold_87 . exon 120578 120804 . + . ID=Physo140580.1;Parent=Physo140580;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 120829 120905 . + 0 ID=Physo140580;Parent=Physo140580;rank=2 scaffold_87 . exon 120829 120905 . + . ID=Physo140580.2;Parent=Physo140580;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 121002 121024 . + 0 ID=Physo140580;Parent=Physo140580;rank=3 scaffold_87 . exon 121002 121024 . + . ID=Physo140580.3;Parent=Physo140580;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 ensembl protein_coding_gene 124696 125430 . - . ID=Physo140581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870028;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 124696 125430 . - . ID=Physo140581;Parent=Physo140581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 124696 125430 . - 0 ID=Physo140581;Parent=Physo140581;rank=1 scaffold_87 . exon 124696 125430 . - . ID=Physo140581.1;Parent=Physo140581;constitutive=1;rank=1 scaffold_87 . repeat_region 127645 127652 . ? . description=dust scaffold_87 . biological_region 129338 129340 0.999 + . logic_name=eponine scaffold_87 . biological_region 130292 130299 0.999 - . logic_name=eponine scaffold_87 . biological_region 130316 130318 0.999 - . logic_name=eponine scaffold_87 . repeat_region 130649 130698 . ? . description=dust scaffold_87 . repeat_region 132597 132610 . ? . description=dust scaffold_87 . biological_region 133843 133845 0.999 + . logic_name=eponine scaffold_87 . biological_region 134601 134604 0.999 + . logic_name=eponine scaffold_87 . biological_region 135936 135939 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 131060 131704 . - . ID=Physo140582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870029;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 131060 131704 . - . ID=Physo140582;Parent=Physo140582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 131060 131704 . - 0 ID=Physo140582;Parent=Physo140582;rank=1 scaffold_87 . exon 131060 131704 . - . ID=Physo140582.1;Parent=Physo140582;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 133324 134013 . - . ID=Physo140583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870030;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 133324 134013 . - . ID=Physo140583;Parent=Physo140583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 133324 134013 . - 0 ID=Physo140583;Parent=Physo140583;rank=1 scaffold_87 . exon 133324 134013 . - . ID=Physo140583.1;Parent=Physo140583;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 135897 137297 . + . ID=Physo140584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870031;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 135897 137297 . + . ID=Physo140584;Parent=Physo140584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 135897 137297 . + 0 ID=Physo140584;Parent=Physo140584;rank=1 scaffold_87 . exon 135897 137297 . + . ID=Physo140584.1;Parent=Physo140584;constitutive=1;rank=1 scaffold_87 . repeat_region 136599 136623 . ? . description=trf scaffold_87 . repeat_region 139906 139995 . + . description=(TCTA)n scaffold_87 . repeat_region 139913 139995 . ? . description=trf scaffold_87 . repeat_region 140625 140685 . ? . description=trf scaffold_87 . repeat_region 142571 142641 . ? . description=trf scaffold_87 . repeat_region 143066 143093 . ? . description=trf scaffold_87 ensembl protein_coding_gene 138933 139725 . - . ID=Physo140585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870032;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 138933 139725 . - . ID=Physo140585;Parent=Physo140585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 138933 139299 . - 0 ID=Physo140585;Parent=Physo140585;rank=2 scaffold_87 . exon 138933 139299 . - . ID=Physo140585.2;Parent=Physo140585;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 139394 139725 . - 0 ID=Physo140585;Parent=Physo140585;rank=1 scaffold_87 . exon 139394 139725 . - . ID=Physo140585.1;Parent=Physo140585;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 140048 140929 . + . ID=Physo140586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870033;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 140048 140929 . + . ID=Physo140586;Parent=Physo140586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 140048 140929 . + 0 ID=Physo140586;Parent=Physo140586;rank=1 scaffold_87 . exon 140048 140929 . + . ID=Physo140586.1;Parent=Physo140586;constitutive=1;rank=1 scaffold_87 . repeat_region 146479 146539 . ? . description=dust scaffold_87 . repeat_region 150819 150830 . ? . description=dust scaffold_87 . repeat_region 151799 151811 . ? . description=dust scaffold_87 ensembl protein_coding_gene 150849 154319 . - . ID=Physo140587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870034;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 150849 154319 . - . ID=Physo140587;Parent=Physo140587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 150849 151380 . - 0 ID=Physo140587;Parent=Physo140587;rank=8 scaffold_87 . exon 150849 151380 . - . ID=Physo140587.8;Parent=Physo140587;constitutive=1;ensembl_phase=2;rank=8 scaffold_87 . CDS 151459 151535 . - 0 ID=Physo140587;Parent=Physo140587;rank=7 scaffold_87 . exon 151459 151535 . - . ID=Physo140587.7;Parent=Physo140587;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_87 . CDS 151959 152191 . - 0 ID=Physo140587;Parent=Physo140587;rank=6 scaffold_87 . exon 151959 152191 . - . ID=Physo140587.6;Parent=Physo140587;constitutive=1;ensembl_phase=1;rank=6 scaffold_87 . CDS 152382 153129 . - 0 ID=Physo140587;Parent=Physo140587;rank=5 scaffold_87 . exon 152382 153129 . - . ID=Physo140587.5;Parent=Physo140587;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_87 . CDS 153273 153518 . - 0 ID=Physo140587;Parent=Physo140587;rank=4 scaffold_87 . exon 153273 153518 . - . ID=Physo140587.4;Parent=Physo140587;constitutive=1;rank=4 scaffold_87 . CDS 153698 154064 . - 0 ID=Physo140587;Parent=Physo140587;rank=3 scaffold_87 . exon 153698 154064 . - . ID=Physo140587.3;Parent=Physo140587;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 154158 154287 . - 0 ID=Physo140587;Parent=Physo140587;rank=2 scaffold_87 . exon 154158 154287 . - . ID=Physo140587.2;Parent=Physo140587;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_87 . CDS 154313 154319 . - 0 ID=Physo140587;Parent=Physo140587;rank=1 scaffold_87 . exon 154313 154319 . - . ID=Physo140587.1;Parent=Physo140587;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . biological_region 157828 157830 0.999 + . logic_name=eponine scaffold_87 . biological_region 161307 161310 0.999 + . logic_name=eponine scaffold_87 . biological_region 161423 161428 0.999 - . logic_name=eponine scaffold_87 . biological_region 164032 164033 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 156325 156985 . + . ID=Physo140588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870035;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 156325 156985 . + . ID=Physo140588;Parent=Physo140588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 156325 156399 . + 0 ID=Physo140588;Parent=Physo140588;rank=1 scaffold_87 . exon 156325 156399 . + . ID=Physo140588.1;Parent=Physo140588;constitutive=1;rank=1 scaffold_87 . CDS 156530 156985 . + 0 ID=Physo140588;Parent=Physo140588;rank=2 scaffold_87 . exon 156530 156985 . + . ID=Physo140588.2;Parent=Physo140588;constitutive=1;rank=2 scaffold_87 . repeat_region 166058 166077 . ? . description=trf scaffold_87 ensembl protein_coding_gene 168525 172826 . - . ID=Physo140589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870036;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 168525 172826 . - . ID=Physo140589;Parent=Physo140589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 168525 169352 . - 0 ID=Physo140589;Parent=Physo140589;rank=6 scaffold_87 . exon 168525 169352 . - . ID=Physo140589.6;Parent=Physo140589;constitutive=1;rank=6 scaffold_87 . CDS 169412 169563 . - 0 ID=Physo140589;Parent=Physo140589;rank=5 scaffold_87 . exon 169412 169563 . - . ID=Physo140589.5;Parent=Physo140589;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 . CDS 169638 169957 . - 0 ID=Physo140589;Parent=Physo140589;rank=4 scaffold_87 . exon 169638 169957 . - . ID=Physo140589.4;Parent=Physo140589;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_87 . CDS 170047 170502 . - 0 ID=Physo140589;Parent=Physo140589;rank=3 scaffold_87 . exon 170047 170502 . - . ID=Physo140589.3;Parent=Physo140589;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_87 . CDS 170603 172734 . - 0 ID=Physo140589;Parent=Physo140589;rank=2 scaffold_87 . exon 170603 172734 . - . ID=Physo140589.2;Parent=Physo140589;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_87 . CDS 172785 172826 . - 0 ID=Physo140589;Parent=Physo140589;rank=1 scaffold_87 . exon 172785 172826 . - . ID=Physo140589.1;Parent=Physo140589;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 175251 177663 . - . ID=Physo140590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870037;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 175251 177663 . - . ID=Physo140590;Parent=Physo140590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 175251 175848 . - 0 ID=Physo140590;Parent=Physo140590;rank=3 scaffold_87 . exon 175251 175848 . - . ID=Physo140590.3;Parent=Physo140590;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 175913 176320 . - 0 ID=Physo140590;Parent=Physo140590;rank=2 scaffold_87 . CDS 176342 177663 . - 0 ID=Physo140590;Parent=Physo140590;rank=1 scaffold_87 . biological_region 177416 177419 0.999 + . logic_name=eponine scaffold_87 . repeat_region 182277 182662 . + . description=Gypsy-2-I_PI-int scaffold_87 . exon 175913 176320 . - . ID=Physo140590.2;Parent=Physo140590;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_87 . exon 176342 177663 . - . ID=Physo140590.1;Parent=Physo140590;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 184633 185991 . - . ID=Physo140591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870038;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 184633 185991 . - . ID=Physo140591;Parent=Physo140591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 184633 184648 . - 0 ID=Physo140591;Parent=Physo140591;rank=4 scaffold_87 . exon 184633 184648 . - . ID=Physo140591.4;Parent=Physo140591;constitutive=1;ensembl_phase=2;rank=4 scaffold_87 . CDS 184749 185449 . - 0 ID=Physo140591;Parent=Physo140591;rank=3 scaffold_87 . exon 184749 185449 . - . ID=Physo140591.3;Parent=Physo140591;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_87 . CDS 185528 185581 . - 0 ID=Physo140591;Parent=Physo140591;rank=2 scaffold_87 . CDS 185623 185991 . - 0 ID=Physo140591;Parent=Physo140591;rank=1 scaffold_87 . repeat_region 188550 188566 . ? . description=dust scaffold_87 . repeat_region 191525 191556 . ? . description=trf scaffold_87 . repeat_region 193520 193573 . ? . description=dust scaffold_87 . repeat_region 193520 193573 . ? . description=trf scaffold_87 . repeat_region 193520 193573 . + . description=(ATG)n scaffold_87 . exon 185528 185581 . - . ID=Physo140591.2;Parent=Physo140591;constitutive=1;rank=2 scaffold_87 . exon 185623 185991 . - . ID=Physo140591.1;Parent=Physo140591;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 189673 190167 . - . ID=Physo140592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870039;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 189673 190167 . - . ID=Physo140592;Parent=Physo140592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 189673 190167 . - 0 ID=Physo140592;Parent=Physo140592;rank=1 scaffold_87 . exon 189673 190167 . - . ID=Physo140592.1;Parent=Physo140592;constitutive=1;rank=1 scaffold_87 . biological_region 195794 195796 0.999 + . logic_name=eponine scaffold_87 ensembl protein_coding_gene 202645 202800 . + . ID=Physo121159;biotype=protein_coding;external_name=estExt_Genewise1.C_870060;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 202645 202800 . + . ID=Physo121159;Parent=Physo121159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 202645 202800 . + . ID=Physo121159.1;Parent=Physo121159;constitutive=1;ensembl_phase=-1;rank=1 scaffold_87 . CDS 202657 202800 . + 0 ID=Physo121159;Parent=Physo121159;rank=1 scaffold_87 ensembl protein_coding_gene 195264 196144 . + . ID=Physo140593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870040;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 195264 196144 . + . ID=Physo140593;Parent=Physo140593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 195264 195767 . + 0 ID=Physo140593;Parent=Physo140593;rank=1 scaffold_87 . exon 195264 196144 . + . ID=Physo140593.1;Parent=Physo140593;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_87 ensembl protein_coding_gene 198509 199948 . + . ID=Physo140594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870041;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 198509 199948 . + . ID=Physo140594;Parent=Physo140594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 198509 198585 . + 0 ID=Physo140594;Parent=Physo140594;rank=1 scaffold_87 . exon 198509 198585 . + . ID=Physo140594.1;Parent=Physo140594;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 198613 198892 . + 0 ID=Physo140594;Parent=Physo140594;rank=2 scaffold_87 . exon 198613 198892 . + . ID=Physo140594.2;Parent=Physo140594;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 198952 199857 . + 0 ID=Physo140594;Parent=Physo140594;rank=3 scaffold_87 . exon 198952 199857 . + . ID=Physo140594.3;Parent=Physo140594;constitutive=1;rank=3 scaffold_87 . CDS 199931 199948 . + 0 ID=Physo140594;Parent=Physo140594;rank=4 scaffold_87 . exon 199931 199948 . + . ID=Physo140594.4;Parent=Physo140594;constitutive=1;rank=4 scaffold_87 ensembl protein_coding_gene 205978 207969 . + . ID=Physo140595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870042;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 205978 207969 . + . ID=Physo140595;Parent=Physo140595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 205978 206023 . + 0 ID=Physo140595;Parent=Physo140595;rank=1 scaffold_87 . exon 205978 206023 . + . ID=Physo140595.1;Parent=Physo140595;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 206273 207969 . + 0 ID=Physo140595;Parent=Physo140595;rank=2 scaffold_87 . exon 206273 207969 . + . ID=Physo140595.2;Parent=Physo140595;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 ensembl protein_coding_gene 210648 214683 . + . ID=Physo140596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870043;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 210648 214683 . + . ID=Physo140596;Parent=Physo140596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 210648 212040 . + 0 ID=Physo140596;Parent=Physo140596;rank=1 scaffold_87 . exon 210648 212040 . + . ID=Physo140596.1;Parent=Physo140596;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 212063 213585 . + 0 ID=Physo140596;Parent=Physo140596;rank=2 scaffold_87 . exon 212063 213585 . + . ID=Physo140596.2;Parent=Physo140596;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 213634 214683 . + 0 ID=Physo140596;Parent=Physo140596;rank=3 scaffold_87 . exon 213634 214683 . + . ID=Physo140596.3;Parent=Physo140596;constitutive=1;rank=3 scaffold_87 . biological_region 214848 214851 0.999 - . logic_name=eponine scaffold_87 . repeat_region 215169 215199 . ? . description=dust scaffold_87 . repeat_region 215169 215199 . ? . description=trf scaffold_87 . biological_region 215436 215438 0.999 + . logic_name=eponine scaffold_87 . biological_region 216323 216324 0.999 + . logic_name=eponine scaffold_87 . repeat_region 219534 219567 . ? . description=dust scaffold_87 . repeat_region 219534 219567 . ? . description=trf scaffold_87 . biological_region 219583 219587 0.999 - . logic_name=eponine scaffold_87 . repeat_region 219709 219742 . ? . description=trf scaffold_87 . repeat_region 219715 219742 . ? . description=dust scaffold_87 . repeat_region 219715 219742 . ? . description=trf scaffold_87 . biological_region 219811 219816 0.999 - . logic_name=eponine scaffold_87 . biological_region 219831 219836 0.999 - . logic_name=eponine scaffold_87 . repeat_region 219846 219929 . ? . description=trf scaffold_87 . biological_region 219863 219870 0.999 - . logic_name=eponine scaffold_87 . biological_region 219887 219890 0.999 + . logic_name=eponine scaffold_87 . repeat_region 219941 219983 . ? . description=trf scaffold_87 . biological_region 219946 219949 0.999 + . logic_name=eponine scaffold_87 . repeat_region 220030 220127 . ? . description=trf scaffold_87 . biological_region 220052 220055 0.999 + . logic_name=eponine scaffold_87 . biological_region 220179 220181 0.999 - . logic_name=eponine scaffold_87 . biological_region 220371 220374 0.999 + . logic_name=eponine scaffold_87 . biological_region 220389 220392 0.999 + . logic_name=eponine scaffold_87 ensembl protein_coding_gene 215911 217291 . + . ID=Physo140597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870044;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 215911 217291 . + . ID=Physo140597;Parent=Physo140597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 215911 216542 . + 0 ID=Physo140597;Parent=Physo140597;rank=1 scaffold_87 . exon 215911 216542 . + . ID=Physo140597.1;Parent=Physo140597;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 216614 216913 . + 0 ID=Physo140597;Parent=Physo140597;rank=2 scaffold_87 . exon 216614 216913 . + . ID=Physo140597.2;Parent=Physo140597;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_87 . CDS 217019 217205 . + 0 ID=Physo140597;Parent=Physo140597;rank=3 scaffold_87 . exon 217019 217205 . + . ID=Physo140597.3;Parent=Physo140597;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 217277 217291 . + 0 ID=Physo140597;Parent=Physo140597;rank=4 scaffold_87 . exon 217277 217291 . + . ID=Physo140597.4;Parent=Physo140597;constitutive=1;rank=4 scaffold_87 ensembl protein_coding_gene 217792 220214 . - . ID=Physo140598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870045;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 217792 220214 . - . ID=Physo140598;Parent=Physo140598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 217792 220214 . - . ID=Physo140598.1;Parent=Physo140598;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_87 . CDS 217902 220214 . - 0 ID=Physo140598;Parent=Physo140598;rank=1 scaffold_87 ensembl protein_coding_gene 220395 222953 . + . ID=Physo140599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870046;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 220395 222953 . + . ID=Physo140599;Parent=Physo140599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 220395 220504 . + 0 ID=Physo140599;Parent=Physo140599;rank=1 scaffold_87 . exon 220395 220504 . + . ID=Physo140599.1;Parent=Physo140599;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 220594 221917 . + 0 ID=Physo140599;Parent=Physo140599;rank=2 scaffold_87 . exon 220594 221917 . + . ID=Physo140599.2;Parent=Physo140599;constitutive=1;ensembl_phase=2;rank=2 scaffold_87 . CDS 221997 222953 . + 0 ID=Physo140599;Parent=Physo140599;rank=3 scaffold_87 . exon 221997 222953 . + . ID=Physo140599.3;Parent=Physo140599;constitutive=1;rank=3 scaffold_87 ensembl protein_coding_gene 222996 224067 . - . ID=Physo140600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870047;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 222996 224067 . - . ID=Physo140600;Parent=Physo140600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 222996 224067 . - . ID=Physo140600.1;Parent=Physo140600;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_87 . CDS 223168 224067 . - 0 ID=Physo140600;Parent=Physo140600;rank=1 scaffold_87 ensembl protein_coding_gene 229233 230735 . + . ID=Physo140601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870048;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 229233 230735 . + . ID=Physo140601;Parent=Physo140601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 229233 230735 . + 0 ID=Physo140601;Parent=Physo140601;rank=1 scaffold_87 . exon 229233 230735 . + . ID=Physo140601.1;Parent=Physo140601;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 231584 237451 . + . ID=Physo140602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870049;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 231584 237451 . + . ID=Physo140602;Parent=Physo140602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 231584 237451 . + 0 ID=Physo140602;Parent=Physo140602;rank=1 scaffold_87 . exon 231584 237451 . + . ID=Physo140602.1;Parent=Physo140602;constitutive=1;rank=1 scaffold_87 . biological_region 239436 239437 0.999 + . logic_name=eponine scaffold_87 . biological_region 239748 239748 0.999 + . logic_name=eponine scaffold_87 . repeat_region 241693 241738 . ? . description=trf scaffold_87 . repeat_region 241697 241741 . ? . description=dust scaffold_87 . biological_region 243336 243337 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 237746 241693 . - . ID=Physo158171;biotype=protein_coding;external_name=C_scaffold_87000004;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 237746 241693 . - . ID=Physo158171;Parent=Physo158171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 237746 237985 . - 0 ID=Physo158171;Parent=Physo158171;rank=3 scaffold_87 . exon 237746 237985 . - . ID=Physo158171.3;Parent=Physo158171;constitutive=1;rank=3 scaffold_87 . CDS 238037 239145 . - 0 ID=Physo158171;Parent=Physo158171;rank=2 scaffold_87 . exon 238037 239145 . - . ID=Physo158171.2;Parent=Physo158171;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 239185 241693 . - 0 ID=Physo158171;Parent=Physo158171;rank=1 scaffold_87 . exon 239185 241693 . - . ID=Physo158171.1;Parent=Physo158171;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 ensembl protein_coding_gene 241999 245323 . - . ID=Physo158172;biotype=protein_coding;external_name=C_scaffold_87000005;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 241999 245323 . - . ID=Physo158172;Parent=Physo158172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 241999 242240 . - 0 ID=Physo158172;Parent=Physo158172;rank=7 scaffold_87 . exon 241999 242240 . - . ID=Physo158172.7;Parent=Physo158172;constitutive=1;ensembl_phase=1;rank=7 scaffold_87 . CDS 242320 242827 . - 0 ID=Physo158172;Parent=Physo158172;rank=6 scaffold_87 . exon 242320 242827 . - . ID=Physo158172.6;Parent=Physo158172;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_87 . CDS 242882 243613 . - 0 ID=Physo158172;Parent=Physo158172;rank=5 scaffold_87 . exon 242882 243613 . - . ID=Physo158172.5;Parent=Physo158172;constitutive=1;rank=5 scaffold_87 . CDS 243776 244212 . - 0 ID=Physo158172;Parent=Physo158172;rank=4 scaffold_87 . CDS 244261 244497 . - 0 ID=Physo158172;Parent=Physo158172;rank=3 scaffold_87 . CDS 244537 244848 . - 0 ID=Physo158172;Parent=Physo158172;rank=2 scaffold_87 . CDS 244972 245323 . - 0 ID=Physo158172;Parent=Physo158172;rank=1 scaffold_87 ensembl protein_coding_gene 249278 249382 . - . ID=Physo121169;biotype=protein_coding;external_name=estExt_Genewise1.C_870070;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 249278 249382 . - . ID=Physo121169;Parent=Physo121169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 249278 249382 . - 0 ID=Physo121169;Parent=Physo121169;rank=1 scaffold_87 . exon 249278 249382 . - . ID=Physo121169.1;Parent=Physo121169;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 249729 253057 . - . ID=Physo140605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870052;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 249729 253057 . - . ID=Physo140605;Parent=Physo140605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 249729 249742 . - 0 ID=Physo140605;Parent=Physo140605;rank=5 scaffold_87 . exon 249729 249742 . - . ID=Physo140605.5;Parent=Physo140605;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 . CDS 249886 251841 . - 0 ID=Physo140605;Parent=Physo140605;rank=4 scaffold_87 . exon 249886 251841 . - . ID=Physo140605.4;Parent=Physo140605;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 251909 251971 . - 0 ID=Physo140605;Parent=Physo140605;rank=3 scaffold_87 . exon 251909 251971 . - . ID=Physo140605.3;Parent=Physo140605;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 252047 252116 . - 0 ID=Physo140605;Parent=Physo140605;rank=2 scaffold_87 . exon 252047 252116 . - . ID=Physo140605.2;Parent=Physo140605;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_87 . CDS 252188 253057 . - 0 ID=Physo140605;Parent=Physo140605;rank=1 scaffold_87 . exon 252188 253057 . - . ID=Physo140605.1;Parent=Physo140605;constitutive=1;rank=1 scaffold_87 . exon 243776 244212 . - . ID=Physo158172.4;Parent=Physo158172;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . exon 244261 244497 . - . ID=Physo158172.3;Parent=Physo158172;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_87 . exon 244537 244848 . - . ID=Physo158172.2;Parent=Physo158172;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_87 . exon 244972 245323 . - . ID=Physo158172.1;Parent=Physo158172;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . repeat_region 253113 253194 . ? . description=trf scaffold_87 . biological_region 253777 253777 0.999 - . logic_name=eponine scaffold_87 . biological_region 254908 254915 0.999 + . logic_name=eponine scaffold_87 . biological_region 256011 256013 0.999 - . logic_name=eponine scaffold_87 . biological_region 256842 256844 0.999 + . logic_name=eponine scaffold_87 . biological_region 257499 257500 0.999 - . logic_name=eponine scaffold_87 . biological_region 257702 257705 0.999 - . logic_name=eponine scaffold_87 . biological_region 258659 258661 0.999 - . logic_name=eponine scaffold_87 . biological_region 259490 259492 0.999 + . logic_name=eponine scaffold_87 . biological_region 260541 260544 0.999 - . logic_name=eponine scaffold_87 . biological_region 260562 260565 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 254736 257128 . + . ID=Physo140606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870053;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 254736 257128 . + . ID=Physo140606;Parent=Physo140606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 254736 254977 . + 0 ID=Physo140606;Parent=Physo140606;rank=1 scaffold_87 . exon 254736 254977 . + . ID=Physo140606.1;Parent=Physo140606;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 255530 255697 . + 0 ID=Physo140606;Parent=Physo140606;rank=2 scaffold_87 . exon 255530 255697 . + . ID=Physo140606.2;Parent=Physo140606;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_87 . CDS 255773 256279 . + 0 ID=Physo140606;Parent=Physo140606;rank=3 scaffold_87 . exon 255773 256279 . + . ID=Physo140606.3;Parent=Physo140606;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_87 . CDS 256409 256653 . + 0 ID=Physo140606;Parent=Physo140606;rank=4 scaffold_87 . exon 256409 256653 . + . ID=Physo140606.4;Parent=Physo140606;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_87 . CDS 256725 257128 . + 0 ID=Physo140606;Parent=Physo140606;rank=5 scaffold_87 . exon 256725 257128 . + . ID=Physo140606.5;Parent=Physo140606;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 ensembl protein_coding_gene 257326 258249 . + . ID=Physo140607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870054;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 257326 258249 . + . ID=Physo140607;Parent=Physo140607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 257326 257415 . + 0 ID=Physo140607;Parent=Physo140607;rank=1 scaffold_87 . exon 257326 257415 . + . ID=Physo140607.1;Parent=Physo140607;constitutive=1;rank=1 scaffold_87 . CDS 257530 258249 . + 0 ID=Physo140607;Parent=Physo140607;rank=2 scaffold_87 . exon 257530 258249 . + . ID=Physo140607.2;Parent=Physo140607;constitutive=1;rank=2 scaffold_87 ensembl protein_coding_gene 258374 260154 . - . ID=Physo140608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870055;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 258374 260154 . - . ID=Physo140608;Parent=Physo140608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 258374 258777 . - 0 ID=Physo140608;Parent=Physo140608;rank=4 scaffold_87 . exon 258374 258777 . - . ID=Physo140608.4;Parent=Physo140608;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 258849 259093 . - 0 ID=Physo140608;Parent=Physo140608;rank=3 scaffold_87 . exon 258849 259093 . - . ID=Physo140608.3;Parent=Physo140608;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 259223 259729 . - 0 ID=Physo140608;Parent=Physo140608;rank=2 scaffold_87 . exon 259223 259729 . - . ID=Physo140608.2;Parent=Physo140608;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_87 . CDS 259805 260154 . - 0 ID=Physo140608;Parent=Physo140608;rank=1 scaffold_87 . exon 259805 260154 . - . ID=Physo140608.1;Parent=Physo140608;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 260449 260806 . + . ID=Physo140609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870056;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 260449 260806 . + . ID=Physo140609;Parent=Physo140609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 260449 260806 . + . ID=Physo140609.1;Parent=Physo140609;constitutive=1;ensembl_phase=-1;rank=1 scaffold_87 . CDS 260450 260806 . + 0 ID=Physo140609;Parent=Physo140609;rank=1 scaffold_87 . repeat_region 264293 264303 . ? . description=dust scaffold_87 . repeat_region 264823 264835 . ? . description=dust scaffold_87 ensembl protein_coding_gene 264137 264846 . - . ID=Physo140610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870057;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 264137 264846 . - . ID=Physo140610;Parent=Physo140610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 264137 264846 . - . ID=Physo140610.1;Parent=Physo140610;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_87 . CDS 264320 264844 . - 0 ID=Physo140610;Parent=Physo140610;rank=1 scaffold_87 ensembl protein_coding_gene 265579 272709 . - . ID=Physo140611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870058;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 265579 272709 . - . ID=Physo140611;Parent=Physo140611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 265579 272709 . - 0 ID=Physo140611;Parent=Physo140611;rank=1 scaffold_87 . exon 265579 272709 . - . ID=Physo140611.1;Parent=Physo140611;constitutive=1;rank=1 scaffold_87 . repeat_region 277518 277557 . ? . description=trf scaffold_87 . repeat_region 280854 280886 . ? . description=trf scaffold_87 ensembl protein_coding_gene 274969 275959 . - . ID=Physo140612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870059;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 274969 275959 . - . ID=Physo140612;Parent=Physo140612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 274969 275032 . - 0 ID=Physo140612;Parent=Physo140612;rank=4 scaffold_87 . exon 274969 275032 . - . ID=Physo140612.4;Parent=Physo140612;constitutive=1;ensembl_phase=2;rank=4 scaffold_87 . CDS 275184 275493 . - 0 ID=Physo140612;Parent=Physo140612;rank=3 scaffold_87 . exon 275184 275493 . - . ID=Physo140612.3;Parent=Physo140612;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_87 . CDS 275551 275611 . - 0 ID=Physo140612;Parent=Physo140612;rank=2 scaffold_87 . exon 275551 275611 . - . ID=Physo140612.2;Parent=Physo140612;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_87 . CDS 275684 275959 . - 0 ID=Physo140612;Parent=Physo140612;rank=1 scaffold_87 . exon 275684 275959 . - . ID=Physo140612.1;Parent=Physo140612;constitutive=1;rank=1 scaffold_87 . biological_region 286463 286466 0.999 - . logic_name=eponine scaffold_87 . biological_region 291997 292001 0.999 - . logic_name=eponine scaffold_87 ensembl protein_coding_gene 286299 286760 . - . ID=Physo140613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870060;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 286299 286760 . - . ID=Physo140613;Parent=Physo140613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 286299 286760 . - 0 ID=Physo140613;Parent=Physo140613;rank=1 scaffold_87 . exon 286299 286760 . - . ID=Physo140613.1;Parent=Physo140613;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 288406 292311 . + . ID=Physo140614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870061;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 288406 292311 . + . ID=Physo140614;Parent=Physo140614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 288406 288603 . + 0 ID=Physo140614;Parent=Physo140614;rank=1 scaffold_87 . exon 288406 288603 . + . ID=Physo140614.1;Parent=Physo140614;constitutive=1;rank=1 scaffold_87 . CDS 288655 288883 . + 0 ID=Physo140614;Parent=Physo140614;rank=2 scaffold_87 . exon 288655 288883 . + . ID=Physo140614.2;Parent=Physo140614;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_87 . CDS 288953 289717 . + 0 ID=Physo140614;Parent=Physo140614;rank=3 scaffold_87 . exon 288953 289717 . + . ID=Physo140614.3;Parent=Physo140614;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_87 . CDS 289737 290840 . + 0 ID=Physo140614;Parent=Physo140614;rank=4 scaffold_87 . exon 289737 290840 . + . ID=Physo140614.4;Parent=Physo140614;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_87 . CDS 291026 292311 . + 0 ID=Physo140614;Parent=Physo140614;rank=5 scaffold_87 . exon 291026 292311 . + . ID=Physo140614.5;Parent=Physo140614;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 . repeat_region 293742 293762 . ? . description=trf scaffold_87 . repeat_region 294495 294506 . ? . description=dust scaffold_87 . repeat_region 294600 294608 . ? . description=dust scaffold_87 . repeat_region 296067 296074 . ? . description=dust scaffold_87 . repeat_region 300296 300353 . ? . description=dust scaffold_87 . repeat_region 300296 300353 . ? . description=trf scaffold_87 ensembl protein_coding_gene 295312 295671 . + . ID=Physo140615;biotype=protein_coding;description=PsAvh226 [Source:UniProtKB/TrEMBL%3BAcc:E0W5I1];external_name=estExt_fgenesh1_pg.C_870062;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 295312 295671 . + . ID=Physo140615;Parent=Physo140615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 295312 295671 . + 0 ID=Physo140615;Parent=Physo140615;rank=1 scaffold_87 . exon 295312 295671 . + . ID=Physo140615.1;Parent=Physo140615;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 297022 297633 . - . ID=Physo140616;biotype=protein_coding;description=PsAvh127 [Source:UniProtKB/TrEMBL%3BAcc:E0W5I2];external_name=estExt_fgenesh1_pg.C_870063;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 297022 297633 . - . ID=Physo140616;Parent=Physo140616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 297022 297633 . - 0 ID=Physo140616;Parent=Physo140616;rank=1 scaffold_87 . exon 297022 297633 . - . ID=Physo140616.1;Parent=Physo140616;constitutive=1;rank=1 scaffold_87 . biological_region 304442 304445 0.999 - . logic_name=eponine scaffold_87 . biological_region 305520 305522 0.999 - . logic_name=eponine scaffold_87 . biological_region 306312 306317 0.999 + . logic_name=eponine scaffold_87 . biological_region 306726 306731 0.999 + . logic_name=eponine scaffold_87 ensembl protein_coding_gene 302396 302779 . + . ID=Physo140617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870064;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 302396 302779 . + . ID=Physo140617;Parent=Physo140617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 302396 302779 . + 0 ID=Physo140617;Parent=Physo140617;rank=1 scaffold_87 . exon 302396 302779 . + . ID=Physo140617.1;Parent=Physo140617;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 308477 309058 . + . ID=Physo140618;biotype=protein_coding;description=PsAvh261 [Source:UniProtKB/TrEMBL%3BAcc:E0W5I3];external_name=estExt_fgenesh1_pg.C_870065;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 308477 309058 . + . ID=Physo140618;Parent=Physo140618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 308477 308860 . + 0 ID=Physo140618;Parent=Physo140618;rank=1 scaffold_87 . exon 308477 309058 . + . ID=Physo140618.1;Parent=Physo140618;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_87 . repeat_region 311737 311773 . ? . description=trf scaffold_87 . repeat_region 311746 311787 . ? . description=trf scaffold_87 . repeat_region 311856 311863 . ? . description=dust scaffold_87 . repeat_region 311971 311978 . ? . description=dust scaffold_87 . repeat_region 314957 315012 . ? . description=trf scaffold_87 . repeat_region 319344 319377 . ? . description=trf scaffold_87 . repeat_region 319534 319542 . ? . description=dust scaffold_87 ensembl tRNA_gene 319443 319513 . - . ID=EPrPSOG00000000113;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_87 ensembl transcript 319443 319513 . - . ID=EPrPSOT00000000113;Parent=EPrPSOG00000000113;biotype=tRNA;logic_name=ncrna_eg scaffold_87 . exon 319443 319513 . - . ID=EPrPSOE00000000113;Parent=EPrPSOT00000000113;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 ensembl protein_coding_gene 312352 313572 . + . ID=Physo140619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870066;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 312352 313572 . + . ID=Physo140619;Parent=Physo140619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 312352 312696 . + 0 ID=Physo140619;Parent=Physo140619;rank=1 scaffold_87 . exon 312352 312696 . + . ID=Physo140619.1;Parent=Physo140619;constitutive=1;rank=1 scaffold_87 . CDS 312773 313271 . + 0 ID=Physo140619;Parent=Physo140619;rank=2 scaffold_87 . exon 312773 313271 . + . ID=Physo140619.2;Parent=Physo140619;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_87 . CDS 313337 313572 . + 0 ID=Physo140619;Parent=Physo140619;rank=3 scaffold_87 . exon 313337 313572 . + . ID=Physo140619.3;Parent=Physo140619;constitutive=1;ensembl_phase=1;rank=3 scaffold_87 ensembl protein_coding_gene 317196 318121 . + . ID=Physo140620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870067;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 317196 318121 . + . ID=Physo140620;Parent=Physo140620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 317196 317232 . + 0 ID=Physo140620;Parent=Physo140620;rank=1 scaffold_87 . exon 317196 317232 . + . ID=Physo140620.1;Parent=Physo140620;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 317466 318121 . + 0 ID=Physo140620;Parent=Physo140620;rank=2 scaffold_87 . exon 317466 318121 . + . ID=Physo140620.2;Parent=Physo140620;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 ensembl protein_coding_gene 321200 325642 . + . ID=Physo140621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870068;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 321200 325642 . + . ID=Physo140621;Parent=Physo140621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 321200 321549 . + 0 ID=Physo140621;Parent=Physo140621;rank=1 scaffold_87 . exon 321200 321549 . + . ID=Physo140621.1;Parent=Physo140621;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_87 . CDS 321625 322131 . + 0 ID=Physo140621;Parent=Physo140621;rank=2 scaffold_87 . CDS 322261 322457 . + 0 ID=Physo140621;Parent=Physo140621;rank=3 scaffold_87 . CDS 322576 322865 . + 0 ID=Physo140621;Parent=Physo140621;rank=4 scaffold_87 . CDS 323320 323428 . + 0 ID=Physo140621;Parent=Physo140621;rank=5 scaffold_87 . CDS 323801 323814 . + 0 ID=Physo140621;Parent=Physo140621;rank=6 scaffold_87 . CDS 323898 323989 . + 0 ID=Physo140621;Parent=Physo140621;rank=7 scaffold_87 . CDS 324067 324281 . + 0 ID=Physo140621;Parent=Physo140621;rank=8 scaffold_87 . CDS 324308 324737 . + 0 ID=Physo140621;Parent=Physo140621;rank=9 scaffold_87 . CDS 324784 325642 . + 0 ID=Physo140621;Parent=Physo140621;rank=10 scaffold_87 . biological_region 321863 321865 0.999 - . logic_name=eponine scaffold_87 . biological_region 322692 322695 0.999 + . logic_name=eponine scaffold_87 . biological_region 324733 324736 0.999 + . logic_name=eponine scaffold_87 . biological_region 325524 325529 0.999 + . logic_name=eponine scaffold_87 . biological_region 325919 325920 0.999 - . logic_name=eponine scaffold_87 . biological_region 328389 328395 0.999 + . logic_name=eponine scaffold_87 . biological_region 328761 328762 0.999 - . logic_name=eponine scaffold_87 . biological_region 329647 329649 0.999 - . logic_name=eponine scaffold_87 . biological_region 329798 329799 0.999 - . logic_name=eponine scaffold_87 . biological_region 329990 329993 0.999 + . logic_name=eponine scaffold_87 . biological_region 330065 330068 0.999 + . logic_name=eponine scaffold_87 . biological_region 330181 330186 0.999 - . logic_name=eponine scaffold_87 . biological_region 330849 330856 0.999 - . logic_name=eponine scaffold_87 . biological_region 330906 330910 0.999 + . logic_name=eponine scaffold_87 . exon 321625 322131 . + . ID=Physo140621.2;Parent=Physo140621;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_87 . exon 322261 322457 . + . ID=Physo140621.3;Parent=Physo140621;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_87 . exon 322576 322865 . + . ID=Physo140621.4;Parent=Physo140621;constitutive=1;ensembl_phase=1;rank=4 scaffold_87 . exon 323320 323428 . + . ID=Physo140621.5;Parent=Physo140621;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_87 . exon 323801 323814 . + . ID=Physo140621.6;Parent=Physo140621;constitutive=1;ensembl_phase=1;rank=6 scaffold_87 . exon 323898 323989 . + . ID=Physo140621.7;Parent=Physo140621;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_87 . exon 324067 324281 . + . ID=Physo140621.8;Parent=Physo140621;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_87 . exon 324308 324737 . + . ID=Physo140621.9;Parent=Physo140621;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_87 . exon 324784 325642 . + . ID=Physo140621.10;Parent=Physo140621;constitutive=1;ensembl_phase=2;rank=10 scaffold_87 ensembl protein_coding_gene 327538 328745 . + . ID=Physo140622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870069;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 327538 328745 . + . ID=Physo140622;Parent=Physo140622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 327538 327874 . + 0 ID=Physo140622;Parent=Physo140622;rank=1 scaffold_87 . exon 327538 327874 . + . ID=Physo140622.1;Parent=Physo140622;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 327955 328745 . + 0 ID=Physo140622;Parent=Physo140622;rank=2 scaffold_87 . exon 327955 328745 . + . ID=Physo140622.2;Parent=Physo140622;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 ensembl protein_coding_gene 329971 333797 . + . ID=Physo140623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870070;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 329971 333797 . + . ID=Physo140623;Parent=Physo140623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 329971 330268 . + 0 ID=Physo140623;Parent=Physo140623;rank=1 scaffold_87 . exon 329971 330268 . + . ID=Physo140623.1;Parent=Physo140623;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 . CDS 330339 331050 . + 0 ID=Physo140623;Parent=Physo140623;rank=2 scaffold_87 . exon 330339 331050 . + . ID=Physo140623.2;Parent=Physo140623;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_87 . CDS 331304 332162 . + 0 ID=Physo140623;Parent=Physo140623;rank=3 scaffold_87 . CDS 332592 332742 . + 0 ID=Physo140623;Parent=Physo140623;rank=4 scaffold_87 . CDS 332824 333797 . + 0 ID=Physo140623;Parent=Physo140623;rank=5 scaffold_87 . repeat_region 332154 332239 . ? . description=trf scaffold_87 . repeat_region 335269 335297 . ? . description=dust scaffold_87 . repeat_region 335323 335386 . ? . description=dust scaffold_87 . repeat_region 335953 335960 . ? . description=dust scaffold_87 . exon 331304 332162 . + . ID=Physo140623.3;Parent=Physo140623;constitutive=1;ensembl_phase=2;rank=3 scaffold_87 . exon 332592 332742 . + . ID=Physo140623.4;Parent=Physo140623;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_87 . exon 332824 333797 . + . ID=Physo140623.5;Parent=Physo140623;constitutive=1;ensembl_phase=1;rank=5 scaffold_87 ensembl protein_coding_gene 334153 335481 . - . ID=Physo140624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870071;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 334153 335481 . - . ID=Physo140624;Parent=Physo140624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 334153 334914 . - . ID=Physo140624.4;Parent=Physo140624;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_87 . CDS 334154 334914 . - 0 ID=Physo140624;Parent=Physo140624;rank=4 scaffold_87 . CDS 335041 335153 . - 0 ID=Physo140624;Parent=Physo140624;rank=3 scaffold_87 . exon 335041 335153 . - . ID=Physo140624.3;Parent=Physo140624;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_87 . CDS 335225 335258 . - 0 ID=Physo140624;Parent=Physo140624;rank=2 scaffold_87 . exon 335225 335258 . - . ID=Physo140624.2;Parent=Physo140624;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_87 . CDS 335397 335481 . - 0 ID=Physo140624;Parent=Physo140624;rank=1 scaffold_87 . exon 335397 335481 . - . ID=Physo140624.1;Parent=Physo140624;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_87 ensembl protein_coding_gene 336841 338133 . + . ID=Physo140625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870072;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 336841 338133 . + . ID=Physo140625;Parent=Physo140625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . exon 336841 336948 . + . ID=Physo140625.1;Parent=Physo140625;constitutive=1;ensembl_phase=-1;rank=1 scaffold_87 . CDS 336892 336948 . + 0 ID=Physo140625;Parent=Physo140625;rank=1 scaffold_87 . CDS 337084 338133 . + 0 ID=Physo140625;Parent=Physo140625;rank=2 scaffold_87 . exon 337084 338133 . + . ID=Physo140625.2;Parent=Physo140625;constitutive=1;rank=2 scaffold_87 ensembl protein_coding_gene 339208 340089 . - . ID=Physo140626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870073;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 339208 340089 . - . ID=Physo140626;Parent=Physo140626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 339208 340089 . - 0 ID=Physo140626;Parent=Physo140626;rank=1 scaffold_87 . exon 339208 340089 . - . ID=Physo140626.1;Parent=Physo140626;constitutive=1;rank=1 scaffold_87 . biological_region 345701 345701 0.999 + . logic_name=eponine scaffold_87 . biological_region 345714 345715 0.999 + . logic_name=eponine scaffold_87 . biological_region 347849 347850 0.999 - . logic_name=eponine scaffold_87 . biological_region 347863 347863 0.999 - . logic_name=eponine scaffold_87 . biological_region 348680 348687 0.999 - . logic_name=eponine scaffold_87 . biological_region 349361 349362 0.999 - . logic_name=eponine scaffold_87 . biological_region 349375 349375 0.999 - . logic_name=eponine scaffold_87 . biological_region 350192 350199 0.999 - . logic_name=eponine scaffold_87 ensembl tRNA_gene 348781 348852 . + . ID=EPrPSOG00000000014;biotype=tRNA;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_87 ensembl transcript 348781 348852 . + . ID=EPrPSOT00000000014;Parent=EPrPSOG00000000014;biotype=tRNA;logic_name=ncrna_eg scaffold_87 ensembl tRNA_gene 350293 350364 . + . ID=EPrPSOG00000000034;biotype=tRNA;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_87 ensembl transcript 350293 350364 . + . ID=EPrPSOT00000000034;Parent=EPrPSOG00000000034;biotype=tRNA;logic_name=ncrna_eg scaffold_87 . exon 348781 348852 . + . ID=EPrPSOE00000000014;Parent=EPrPSOT00000000014;constitutive=1;rank=1 scaffold_87 . exon 350293 350364 . + . ID=EPrPSOE00000000034;Parent=EPrPSOT00000000034;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 340981 342006 . - . ID=Physo109305;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_870002;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 340981 342006 . - . ID=Physo109305;Parent=Physo109305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 340981 342006 . - 0 ID=Physo109305;Parent=Physo109305;rank=1 scaffold_87 . exon 340981 342006 . - . ID=Physo109305.1;Parent=Physo109305;constitutive=1;rank=1 scaffold_87 ensembl protein_coding_gene 345735 346411 . - . ID=Physo140628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_870075;logic_name=jgi_physo1_1 scaffold_87 ensembl transcript 345735 346411 . - . ID=Physo140628;Parent=Physo140628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_87 . CDS 345735 346066 . - 0 ID=Physo140628;Parent=Physo140628;rank=2 scaffold_87 . exon 345735 346066 . - . ID=Physo140628.2;Parent=Physo140628;constitutive=1;ensembl_phase=1;rank=2 scaffold_87 . CDS 346255 346411 . - 0 ID=Physo140628;Parent=Physo140628;rank=1 scaffold_87 . exon 346255 346411 . - . ID=Physo140628.1;Parent=Physo140628;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_88 1 350951 scaffold_88 . biological_region 1966 1969 0.999 + . logic_name=eponine scaffold_88 . repeat_region 3185 3192 . ? . description=dust scaffold_88 . biological_region 5779 5781 0.999 + . logic_name=eponine scaffold_88 . repeat_region 5803 5821 . ? . description=dust scaffold_88 . repeat_region 7277 7290 . ? . description=dust scaffold_88 . repeat_region 7306 7313 . ? . description=dust scaffold_88 . repeat_region 7340 7364 . ? . description=trf scaffold_88 . repeat_region 8256 8305 . ? . description=trf scaffold_88 . repeat_region 8933 8973 . ? . description=dust scaffold_88 . repeat_region 8935 8971 . ? . description=trf scaffold_88 ensembl protein_coding_gene 1005 2183 . + . ID=Physo140629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880001;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 1005 2183 . + . ID=Physo140629;Parent=Physo140629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 1005 1042 . + 0 ID=Physo140629;Parent=Physo140629;rank=1 scaffold_88 . exon 1005 1042 . + . ID=Physo140629.1;Parent=Physo140629;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 1323 1433 . + 0 ID=Physo140629;Parent=Physo140629;rank=2 scaffold_88 . exon 1323 1433 . + . ID=Physo140629.2;Parent=Physo140629;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_88 . CDS 1534 1545 . + 0 ID=Physo140629;Parent=Physo140629;rank=3 scaffold_88 . exon 1534 1545 . + . ID=Physo140629.3;Parent=Physo140629;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_88 . CDS 1946 2183 . + 0 ID=Physo140629;Parent=Physo140629;rank=4 scaffold_88 . exon 1946 2183 . + . ID=Physo140629.4;Parent=Physo140629;constitutive=1;ensembl_phase=2;rank=4 scaffold_88 . repeat_region 20111 20150 . ? . description=trf scaffold_88 . repeat_region 21111 21118 . ? . description=dust scaffold_88 . repeat_region 21365 21389 . ? . description=trf scaffold_88 . repeat_region 21438 21445 . ? . description=dust scaffold_88 . biological_region 23256 23258 0.999 + . logic_name=eponine scaffold_88 . repeat_region 25919 25948 . ? . description=trf scaffold_88 . biological_region 26299 26303 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 27232 28365 . + . ID=Physo121181;biotype=protein_coding;external_name=estExt_Genewise1.C_880012;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 27232 28365 . + . ID=Physo121181;Parent=Physo121181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 27232 28365 . + . ID=Physo121181.1;Parent=Physo121181;constitutive=1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 27259 28365 . + 0 ID=Physo121181;Parent=Physo121181;rank=1 scaffold_88 ensembl protein_coding_gene 23115 25193 . + . ID=Physo140630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880002;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 23115 25193 . + . ID=Physo140630;Parent=Physo140630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 23115 25193 . + 0 ID=Physo140630;Parent=Physo140630;rank=1 scaffold_88 . exon 23115 25193 . + . ID=Physo140630.1;Parent=Physo140630;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 25268 26796 . - . ID=Physo140631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880003;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 25268 26796 . - . ID=Physo140631;Parent=Physo140631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 25268 26572 . - . ID=Physo140631.2;Parent=Physo140631;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_88 . CDS 25362 26572 . - 0 ID=Physo140631;Parent=Physo140631;rank=2 scaffold_88 . CDS 26661 26796 . - 0 ID=Physo140631;Parent=Physo140631;rank=1 scaffold_88 . exon 26661 26796 . - . ID=Physo140631.1;Parent=Physo140631;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . repeat_region 29873 29994 . - . description=Sola3-2_PS scaffold_88 ensembl protein_coding_gene 30260 32038 . - . ID=Physo140633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880005;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 30260 32038 . - . ID=Physo140633;Parent=Physo140633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 30260 30666 . - 0 ID=Physo140633;Parent=Physo140633;rank=4 scaffold_88 . exon 30260 30666 . - . ID=Physo140633.4;Parent=Physo140633;constitutive=1;ensembl_phase=1;rank=4 scaffold_88 . CDS 30737 31029 . - 0 ID=Physo140633;Parent=Physo140633;rank=3 scaffold_88 . exon 30737 31029 . - . ID=Physo140633.3;Parent=Physo140633;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 31229 31612 . - 0 ID=Physo140633;Parent=Physo140633;rank=2 scaffold_88 . exon 31229 31612 . - . ID=Physo140633.2;Parent=Physo140633;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_88 . CDS 31686 32038 . - 0 ID=Physo140633;Parent=Physo140633;rank=1 scaffold_88 . exon 31686 32038 . - . ID=Physo140633.1;Parent=Physo140633;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 33543 35960 . - . ID=Physo140634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880006;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 33543 35960 . - . ID=Physo140634;Parent=Physo140634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 33543 35960 . - 0 ID=Physo140634;Parent=Physo140634;rank=1 scaffold_88 . exon 33543 35960 . - . ID=Physo140634.1;Parent=Physo140634;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 37360 39310 . - . ID=Physo140636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880008;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 37360 39310 . - . ID=Physo140636;Parent=Physo140636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 37360 37728 . - 0 ID=Physo140636;Parent=Physo140636;rank=2 scaffold_88 . exon 37360 37728 . - . ID=Physo140636.2;Parent=Physo140636;constitutive=1;rank=2 scaffold_88 . CDS 37793 39310 . - 0 ID=Physo140636;Parent=Physo140636;rank=1 scaffold_88 . exon 37793 39310 . - . ID=Physo140636.1;Parent=Physo140636;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 36194 37270 . + . ID=Physo158174;biotype=protein_coding;external_name=C_scaffold_88000002;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 36194 37270 . + . ID=Physo158174;Parent=Physo158174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 36194 36269 . + 0 ID=Physo158174;Parent=Physo158174;rank=1 scaffold_88 . exon 36194 36269 . + . ID=Physo158174.1;Parent=Physo158174;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . CDS 36354 36881 . + 0 ID=Physo158174;Parent=Physo158174;rank=2 scaffold_88 . exon 36354 36881 . + . ID=Physo158174.2;Parent=Physo158174;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_88 . CDS 36948 37270 . + 0 ID=Physo158174;Parent=Physo158174;rank=3 scaffold_88 . exon 36948 37270 . + . ID=Physo158174.3;Parent=Physo158174;constitutive=1;ensembl_phase=1;rank=3 scaffold_88 . biological_region 39016 39021 0.999 + . logic_name=eponine scaffold_88 . repeat_region 39154 39194 . ? . description=trf scaffold_88 . repeat_region 39204 39259 . ? . description=dust scaffold_88 . biological_region 39887 39891 0.999 + . logic_name=eponine scaffold_88 . biological_region 39946 39950 0.999 - . logic_name=eponine scaffold_88 . repeat_region 42104 42111 . ? . description=dust scaffold_88 . repeat_region 43400 43591 . ? . description=trf scaffold_88 . repeat_region 43403 43559 . ? . description=trf scaffold_88 . repeat_region 43459 43604 . ? . description=trf scaffold_88 . repeat_region 43614 43708 . ? . description=trf scaffold_88 . repeat_region 43637 43699 . ? . description=trf scaffold_88 . biological_region 47764 47768 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 48663 49101 . + . ID=Physo109306;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_880001;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 48663 49101 . + . ID=Physo109306;Parent=Physo109306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 48663 48690 . + 0 ID=Physo109306;Parent=Physo109306;rank=1 scaffold_88 . exon 48663 48690 . + . ID=Physo109306.1;Parent=Physo109306;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . CDS 48782 49101 . + 0 ID=Physo109306;Parent=Physo109306;rank=2 scaffold_88 ensembl protein_coding_gene 39535 40621 . + . ID=Physo140637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880009;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 39535 40621 . + . ID=Physo140637;Parent=Physo140637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 39535 39640 . + . ID=Physo140637.1;Parent=Physo140637;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_88 . CDS 39555 39640 . + 0 ID=Physo140637;Parent=Physo140637;rank=1 scaffold_88 . CDS 39725 40234 . + 0 ID=Physo140637;Parent=Physo140637;rank=2 scaffold_88 . exon 39725 40234 . + . ID=Physo140637.2;Parent=Physo140637;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_88 . CDS 40314 40431 . + 0 ID=Physo140637;Parent=Physo140637;rank=3 scaffold_88 . exon 40314 40431 . + . ID=Physo140637.3;Parent=Physo140637;constitutive=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 40508 40621 . + 0 ID=Physo140637;Parent=Physo140637;rank=4 scaffold_88 . exon 40508 40621 . + . ID=Physo140637.4;Parent=Physo140637;constitutive=1;rank=4 scaffold_88 ensembl protein_coding_gene 40850 41595 . - . ID=Physo140638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880010;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 40850 41595 . - . ID=Physo140638;Parent=Physo140638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 40850 40891 . - 0 ID=Physo140638;Parent=Physo140638;rank=3 scaffold_88 . exon 40850 40891 . - . ID=Physo140638.3;Parent=Physo140638;constitutive=1;rank=3 scaffold_88 . CDS 40929 41489 . - 0 ID=Physo140638;Parent=Physo140638;rank=2 scaffold_88 . exon 40929 41489 . - . ID=Physo140638.2;Parent=Physo140638;constitutive=1;rank=2 scaffold_88 . CDS 41581 41595 . - 0 ID=Physo140638;Parent=Physo140638;rank=1 scaffold_88 . exon 41581 41595 . - . ID=Physo140638.1;Parent=Physo140638;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 43006 43938 . - . ID=Physo140639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880011;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 43006 43938 . - . ID=Physo140639;Parent=Physo140639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 43006 43938 . - 0 ID=Physo140639;Parent=Physo140639;rank=1 scaffold_88 . exon 43006 43938 . - . ID=Physo140639.1;Parent=Physo140639;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 45941 46875 . + . ID=Physo140640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880012;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 45941 46875 . + . ID=Physo140640;Parent=Physo140640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 45941 46235 . + 0 ID=Physo140640;Parent=Physo140640;rank=1 scaffold_88 . exon 45941 46235 . + . ID=Physo140640.1;Parent=Physo140640;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . CDS 46445 46875 . + 0 ID=Physo140640;Parent=Physo140640;rank=2 scaffold_88 . exon 46445 46875 . + . ID=Physo140640.2;Parent=Physo140640;constitutive=1;ensembl_phase=1;rank=2 scaffold_88 ensembl protein_coding_gene 47482 48513 . + . ID=Physo140641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880013;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 47482 48513 . + . ID=Physo140641;Parent=Physo140641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 47482 48513 . + 0 ID=Physo140641;Parent=Physo140641;rank=1 scaffold_88 . exon 47482 48513 . + . ID=Physo140641.1;Parent=Physo140641;constitutive=1;rank=1 scaffold_88 . exon 48782 49101 . + . ID=Physo109306.2;Parent=Physo109306;constitutive=1;ensembl_phase=1;rank=2 scaffold_88 ensembl protein_coding_gene 51398 52391 . - . ID=Physo140644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880016;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 51398 52391 . - . ID=Physo140644;Parent=Physo140644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 51398 52196 . - . ID=Physo140644.2;Parent=Physo140644;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_88 . CDS 51481 52196 . - 0 ID=Physo140644;Parent=Physo140644;rank=2 scaffold_88 . CDS 52335 52347 . - 0 ID=Physo140644;Parent=Physo140644;rank=1 scaffold_88 . exon 52335 52391 . - . ID=Physo140644.1;Parent=Physo140644;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_88 ensembl protein_coding_gene 52546 54125 . + . ID=Physo140645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880017;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 52546 54125 . + . ID=Physo140645;Parent=Physo140645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 52546 52925 . + 0 ID=Physo140645;Parent=Physo140645;rank=1 scaffold_88 . exon 52546 52925 . + . ID=Physo140645.1;Parent=Physo140645;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 53004 53700 . + 0 ID=Physo140645;Parent=Physo140645;rank=2 scaffold_88 . exon 53004 53700 . + . ID=Physo140645.2;Parent=Physo140645;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 53768 53839 . + 0 ID=Physo140645;Parent=Physo140645;rank=3 scaffold_88 . exon 53768 53839 . + . ID=Physo140645.3;Parent=Physo140645;constitutive=1;rank=3 scaffold_88 . CDS 53930 53968 . + 0 ID=Physo140645;Parent=Physo140645;rank=4 scaffold_88 . exon 53930 54125 . + . ID=Physo140645.4;Parent=Physo140645;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_88 ensembl protein_coding_gene 54625 55002 . - . ID=Physo140646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880018;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 54625 55002 . - . ID=Physo140646;Parent=Physo140646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 54625 55002 . - 0 ID=Physo140646;Parent=Physo140646;rank=1 scaffold_88 . exon 54625 55002 . - . ID=Physo140646.1;Parent=Physo140646;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 58374 59144 . - . ID=Physo140647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880019;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 58374 59144 . - . ID=Physo140647;Parent=Physo140647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 58374 59144 . - 0 ID=Physo140647;Parent=Physo140647;rank=1 scaffold_88 . exon 58374 59144 . - . ID=Physo140647.1;Parent=Physo140647;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 50589 51355 . + . ID=Physo158179;biotype=protein_coding;external_name=C_scaffold_88000007;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 50589 51355 . + . ID=Physo158179;Parent=Physo158179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 50589 51355 . + . ID=Physo158179.1;Parent=Physo158179;constitutive=1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 50591 51355 . + 0 ID=Physo158179;Parent=Physo158179;rank=1 scaffold_88 . repeat_region 58597 58747 . ? . description=trf scaffold_88 . repeat_region 58831 58862 . ? . description=trf scaffold_88 . repeat_region 58858 58906 . ? . description=trf scaffold_88 . repeat_region 58954 59003 . ? . description=trf scaffold_88 . repeat_region 59005 59039 . ? . description=trf scaffold_88 . repeat_region 59680 59687 . ? . description=dust scaffold_88 . repeat_region 59907 59914 . ? . description=dust scaffold_88 . repeat_region 60925 60993 . + . description=Gypsy-1-LTR_PI scaffold_88 . repeat_region 61510 61556 . - . description=Sola3-2_PS scaffold_88 . repeat_region 61606 61646 . + . description=(CTG)n scaffold_88 . repeat_region 63023 63031 . ? . description=dust scaffold_88 . repeat_region 66021 66028 . ? . description=dust scaffold_88 . repeat_region 66656 66679 . ? . description=dust scaffold_88 . repeat_region 67095 67132 . ? . description=trf scaffold_88 . repeat_region 67371 67438 . + . description=Gypsy-2-LTR_PI scaffold_88 ensembl protein_coding_gene 60133 60441 . + . ID=Physo140648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880020;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 60133 60441 . + . ID=Physo140648;Parent=Physo140648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 60133 60441 . + 0 ID=Physo140648;Parent=Physo140648;rank=1 scaffold_88 . exon 60133 60441 . + . ID=Physo140648.1;Parent=Physo140648;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 62012 62932 . + . ID=Physo140649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880021;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 62012 62932 . + . ID=Physo140649;Parent=Physo140649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 62012 62932 . + 0 ID=Physo140649;Parent=Physo140649;rank=1 scaffold_88 . exon 62012 62932 . + . ID=Physo140649.1;Parent=Physo140649;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 66113 67009 . - . ID=Physo140650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880022;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 66113 67009 . - . ID=Physo140650;Parent=Physo140650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 66113 66529 . - 0 ID=Physo140650;Parent=Physo140650;rank=3 scaffold_88 . exon 66113 66529 . - . ID=Physo140650.3;Parent=Physo140650;constitutive=1;rank=3 scaffold_88 . CDS 66698 66845 . - 0 ID=Physo140650;Parent=Physo140650;rank=2 scaffold_88 . exon 66698 66845 . - . ID=Physo140650.2;Parent=Physo140650;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 66900 67009 . - 0 ID=Physo140650;Parent=Physo140650;rank=1 scaffold_88 . exon 66900 67009 . - . ID=Physo140650.1;Parent=Physo140650;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . biological_region 69090 69092 0.999 - . logic_name=eponine scaffold_88 . biological_region 73916 73920 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 68988 70675 . + . ID=Physo109308;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_880003;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 68988 70675 . + . ID=Physo109308;Parent=Physo109308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 68988 70532 . + 0 ID=Physo109308;Parent=Physo109308;rank=1 scaffold_88 . exon 68988 70675 . + . ID=Physo109308.1;Parent=Physo109308;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_88 ensembl protein_coding_gene 71685 72497 . + . ID=Physo121202;biotype=protein_coding;external_name=estExt_Genewise1.C_880033;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 71685 72497 . + . ID=Physo121202;Parent=Physo121202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 71685 72359 . + 0 ID=Physo121202;Parent=Physo121202;rank=1 scaffold_88 . exon 71685 72497 . + . ID=Physo121202.1;Parent=Physo121202;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_88 ensembl pseudogene 75112 75752 . + . ID=Physo140653;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_880025;logic_name=jgi_physo1_1 scaffold_88 ensembl pseudogene 75112 75752 . + . ID=Physo140653;Parent=Physo140653;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_88 . exon 75112 75138 . + . ID=Physo140653.1;Parent=Physo140653;constitutive=1;rank=1 scaffold_88 . exon 75161 75507 . + . ID=Physo140653.2;Parent=Physo140653;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_88 . exon 75535 75553 . + . ID=Physo140653.3;Parent=Physo140653;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_88 . exon 75686 75752 . + . ID=Physo140653.4;Parent=Physo140653;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_88 ensembl protein_coding_gene 76352 76692 . - . ID=Physo140654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880026;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 76352 76692 . - . ID=Physo140654;Parent=Physo140654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 76352 76557 . - 0 ID=Physo140654;Parent=Physo140654;rank=2 scaffold_88 . exon 76352 76557 . - . ID=Physo140654.2;Parent=Physo140654;constitutive=1;ensembl_phase=1;rank=2 scaffold_88 . CDS 76590 76692 . - 0 ID=Physo140654;Parent=Physo140654;rank=1 scaffold_88 . exon 76590 76692 . - . ID=Physo140654.1;Parent=Physo140654;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 ensembl protein_coding_gene 77642 78355 . + . ID=Physo140655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880027;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 77642 78355 . + . ID=Physo140655;Parent=Physo140655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 77642 78355 . + 0 ID=Physo140655;Parent=Physo140655;rank=1 scaffold_88 . exon 77642 78355 . + . ID=Physo140655.1;Parent=Physo140655;constitutive=1;rank=1 scaffold_88 . repeat_region 78211 78266 . ? . description=trf scaffold_88 . repeat_region 78954 78961 . ? . description=dust scaffold_88 . repeat_region 81212 81283 . ? . description=trf scaffold_88 . repeat_region 85633 85642 . ? . description=dust scaffold_88 ensembl protein_coding_gene 80305 81077 . + . ID=Physo140656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880028;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 80305 81077 . + . ID=Physo140656;Parent=Physo140656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 80305 80321 . + 0 ID=Physo140656;Parent=Physo140656;rank=1 scaffold_88 . exon 80305 80321 . + . ID=Physo140656.1;Parent=Physo140656;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 80345 80672 . + 0 ID=Physo140656;Parent=Physo140656;rank=2 scaffold_88 . exon 80345 80672 . + . ID=Physo140656.2;Parent=Physo140656;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 80808 81077 . + 0 ID=Physo140656;Parent=Physo140656;rank=3 scaffold_88 . exon 80808 81077 . + . ID=Physo140656.3;Parent=Physo140656;constitutive=1;rank=3 scaffold_88 ensembl protein_coding_gene 82079 82642 . + . ID=Physo140657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880029;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 82079 82642 . + . ID=Physo140657;Parent=Physo140657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 82079 82642 . + 0 ID=Physo140657;Parent=Physo140657;rank=1 scaffold_88 . exon 82079 82642 . + . ID=Physo140657.1;Parent=Physo140657;constitutive=1;rank=1 scaffold_88 . biological_region 89222 89225 0.999 + . logic_name=eponine scaffold_88 . repeat_region 89860 89928 . + . description=Gypsy-2-I_PI-int scaffold_88 . biological_region 96259 96261 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 92338 92562 . + . ID=Physo121208;biotype=protein_coding;external_name=estExt_Genewise1.C_880039;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 92338 92562 . + . ID=Physo121208;Parent=Physo121208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 92338 92562 . + . ID=Physo121208.1;Parent=Physo121208;constitutive=1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 92344 92562 . + 0 ID=Physo121208;Parent=Physo121208;rank=1 scaffold_88 ensembl protein_coding_gene 89332 91829 . + . ID=Physo140658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880030;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 89332 91829 . + . ID=Physo140658;Parent=Physo140658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 89332 91220 . + 0 ID=Physo140658;Parent=Physo140658;rank=1 scaffold_88 . exon 89332 91220 . + . ID=Physo140658.1;Parent=Physo140658;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 91439 91829 . + 0 ID=Physo140658;Parent=Physo140658;rank=2 scaffold_88 . exon 91439 91829 . + . ID=Physo140658.2;Parent=Physo140658;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 ensembl protein_coding_gene 93157 93597 . + . ID=Physo140659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880031;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 93157 93597 . + . ID=Physo140659;Parent=Physo140659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 93157 93212 . + 0 ID=Physo140659;Parent=Physo140659;rank=1 scaffold_88 . exon 93157 93212 . + . ID=Physo140659.1;Parent=Physo140659;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 93273 93597 . + 0 ID=Physo140659;Parent=Physo140659;rank=2 scaffold_88 . exon 93273 93597 . + . ID=Physo140659.2;Parent=Physo140659;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 ensembl protein_coding_gene 95841 96740 . - . ID=Physo140660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880032;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 95841 96740 . - . ID=Physo140660;Parent=Physo140660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 95841 96740 . - 0 ID=Physo140660;Parent=Physo140660;rank=1 scaffold_88 . exon 95841 96740 . - . ID=Physo140660.1;Parent=Physo140660;constitutive=1;rank=1 scaffold_88 . repeat_region 97846 97881 . ? . description=trf scaffold_88 . repeat_region 97864 97905 . ? . description=trf scaffold_88 . repeat_region 97896 97925 . ? . description=trf scaffold_88 . repeat_region 98822 98861 . ? . description=trf scaffold_88 . repeat_region 100396 100441 . ? . description=trf scaffold_88 . repeat_region 106124 106133 . ? . description=dust scaffold_88 . repeat_region 106873 106886 . ? . description=dust scaffold_88 . repeat_region 107212 107219 . ? . description=dust scaffold_88 ensembl protein_coding_gene 101576 102721 . - . ID=Physo109310;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_880005;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 101576 102721 . - . ID=Physo109310;Parent=Physo109310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 101576 102721 . - 0 ID=Physo109310;Parent=Physo109310;rank=1 scaffold_88 . exon 101576 102721 . - . ID=Physo109310.1;Parent=Physo109310;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 97691 98031 . + . ID=Physo140661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880033;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 97691 98031 . + . ID=Physo140661;Parent=Physo140661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 97691 97793 . + 0 ID=Physo140661;Parent=Physo140661;rank=1 scaffold_88 . exon 97691 97793 . + . ID=Physo140661.1;Parent=Physo140661;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . CDS 97826 98031 . + 0 ID=Physo140661;Parent=Physo140661;rank=2 scaffold_88 . exon 97826 98031 . + . ID=Physo140661.2;Parent=Physo140661;constitutive=1;ensembl_phase=1;rank=2 scaffold_88 ensembl pseudogene 98632 99534 . - . ID=Physo140662;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_880034;logic_name=jgi_physo1_1 scaffold_88 ensembl pseudogene 98632 99534 . - . ID=Physo140662;Parent=Physo140662;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_88 . exon 98632 99534 . - . ID=Physo140662.1;Parent=Physo140662;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_88 ensembl protein_coding_gene 103524 105568 . - . ID=Physo140665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880037;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 103524 105568 . - . ID=Physo140665;Parent=Physo140665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 103524 103545 . - 0 ID=Physo140665;Parent=Physo140665;rank=2 scaffold_88 . exon 103524 103545 . - . ID=Physo140665.2;Parent=Physo140665;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 103647 105568 . - 0 ID=Physo140665;Parent=Physo140665;rank=1 scaffold_88 . exon 103647 105568 . - . ID=Physo140665.1;Parent=Physo140665;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . biological_region 116560 116560 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 110746 111433 . - . ID=Physo140666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880038;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 110746 111433 . - . ID=Physo140666;Parent=Physo140666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 110746 111433 . - . ID=Physo140666.1;Parent=Physo140666;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 110747 111355 . - 0 ID=Physo140666;Parent=Physo140666;rank=1 scaffold_88 ensembl protein_coding_gene 113232 113919 . + . ID=Physo140667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880039;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 113232 113919 . + . ID=Physo140667;Parent=Physo140667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 113232 113919 . + . ID=Physo140667.1;Parent=Physo140667;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 113310 113918 . + 0 ID=Physo140667;Parent=Physo140667;rank=1 scaffold_88 . repeat_region 117288 117295 . ? . description=dust scaffold_88 . repeat_region 118496 118669 . + . description=(CAG)n scaffold_88 . repeat_region 118505 118590 . ? . description=trf scaffold_88 . repeat_region 118586 118632 . ? . description=trf scaffold_88 . repeat_region 118640 118731 . ? . description=trf scaffold_88 . repeat_region 118658 118719 . ? . description=trf scaffold_88 . repeat_region 121519 121527 . ? . description=dust scaffold_88 . repeat_region 124022 124057 . ? . description=trf scaffold_88 . repeat_region 124066 124116 . ? . description=trf scaffold_88 . repeat_region 124301 124363 . ? . description=trf scaffold_88 . repeat_region 124483 124521 . ? . description=trf scaffold_88 . repeat_region 124559 124622 . ? . description=dust scaffold_88 . repeat_region 124594 124620 . ? . description=trf scaffold_88 . repeat_region 124653 124711 . ? . description=trf scaffold_88 . repeat_region 124653 124712 . ? . description=trf scaffold_88 ensembl protein_coding_gene 118049 118897 . + . ID=Physo140668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880040;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 118049 118897 . + . ID=Physo140668;Parent=Physo140668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 118049 118897 . + 0 ID=Physo140668;Parent=Physo140668;rank=1 scaffold_88 . exon 118049 118897 . + . ID=Physo140668.1;Parent=Physo140668;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 123388 124836 . - . ID=Physo140671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880043;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 123388 124836 . - . ID=Physo140671;Parent=Physo140671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 123388 124836 . - . ID=Physo140671.1;Parent=Physo140671;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_88 . CDS 123550 124836 . - 0 ID=Physo140671;Parent=Physo140671;rank=1 scaffold_88 ensembl protein_coding_gene 125598 131300 . + . ID=Physo140672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880044;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 125598 131300 . + . ID=Physo140672;Parent=Physo140672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 125598 129152 . + 0 ID=Physo140672;Parent=Physo140672;rank=1 scaffold_88 . exon 125598 129152 . + . ID=Physo140672.1;Parent=Physo140672;constitutive=1;rank=1 scaffold_88 . CDS 129222 129392 . + 0 ID=Physo140672;Parent=Physo140672;rank=2 scaffold_88 . CDS 129466 129618 . + 0 ID=Physo140672;Parent=Physo140672;rank=3 scaffold_88 . CDS 130063 130116 . + 0 ID=Physo140672;Parent=Physo140672;rank=4 scaffold_88 . CDS 130212 130909 . + 0 ID=Physo140672;Parent=Physo140672;rank=5 scaffold_88 . CDS 130978 131167 . + 0 ID=Physo140672;Parent=Physo140672;rank=6 scaffold_88 . CDS 131235 131300 . + 0 ID=Physo140672;Parent=Physo140672;rank=7 scaffold_88 ensembl protein_coding_gene 119758 123121 . + . ID=Physo158181;biotype=protein_coding;external_name=C_scaffold_88000009;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 119758 123121 . + . ID=Physo158181;Parent=Physo158181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 119758 120464 . + . ID=Physo158181.1;Parent=Physo158181;constitutive=1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 119760 120464 . + 0 ID=Physo158181;Parent=Physo158181;rank=1 scaffold_88 . CDS 120486 120588 . + 0 ID=Physo158181;Parent=Physo158181;rank=2 scaffold_88 . exon 120486 120588 . + . ID=Physo158181.2;Parent=Physo158181;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_88 . CDS 120703 120802 . + 0 ID=Physo158181;Parent=Physo158181;rank=3 scaffold_88 . exon 120703 120802 . + . ID=Physo158181.3;Parent=Physo158181;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_88 . CDS 120893 121088 . + 0 ID=Physo158181;Parent=Physo158181;rank=4 scaffold_88 . exon 120893 121088 . + . ID=Physo158181.4;Parent=Physo158181;constitutive=1;ensembl_phase=2;rank=4 scaffold_88 . CDS 121659 122013 . + 0 ID=Physo158181;Parent=Physo158181;rank=5 scaffold_88 . exon 121659 122013 . + . ID=Physo158181.5;Parent=Physo158181;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_88 . CDS 122083 122940 . + 0 ID=Physo158181;Parent=Physo158181;rank=6 scaffold_88 . exon 122083 122940 . + . ID=Physo158181.6;Parent=Physo158181;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_88 . CDS 123042 123121 . + 0 ID=Physo158181;Parent=Physo158181;rank=7 scaffold_88 . exon 123042 123121 . + . ID=Physo158181.7;Parent=Physo158181;constitutive=1;ensembl_phase=1;rank=7 scaffold_88 . biological_region 129787 129791 0.999 - . logic_name=eponine scaffold_88 . biological_region 130354 130355 0.999 + . logic_name=eponine scaffold_88 . biological_region 134385 134390 0.999 + . logic_name=eponine scaffold_88 . biological_region 136395 136395 0.999 + . logic_name=eponine scaffold_88 . exon 129222 129392 . + . ID=Physo140672.2;Parent=Physo140672;constitutive=1;rank=2 scaffold_88 . exon 129466 129618 . + . ID=Physo140672.3;Parent=Physo140672;constitutive=1;rank=3 scaffold_88 . exon 130063 130116 . + . ID=Physo140672.4;Parent=Physo140672;constitutive=1;rank=4 scaffold_88 . exon 130212 130909 . + . ID=Physo140672.5;Parent=Physo140672;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_88 . exon 130978 131167 . + . ID=Physo140672.6;Parent=Physo140672;constitutive=1;ensembl_phase=2;rank=6 scaffold_88 . exon 131235 131300 . + . ID=Physo140672.7;Parent=Physo140672;constitutive=1;rank=7 scaffold_88 ensembl protein_coding_gene 131494 132331 . - . ID=Physo140673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880045;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 131494 132331 . - . ID=Physo140673;Parent=Physo140673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 131494 131717 . - 0 ID=Physo140673;Parent=Physo140673;rank=3 scaffold_88 . exon 131494 131717 . - . ID=Physo140673.3;Parent=Physo140673;constitutive=1;ensembl_phase=1;rank=3 scaffold_88 . CDS 131818 131856 . - 0 ID=Physo140673;Parent=Physo140673;rank=2 scaffold_88 . exon 131818 131856 . - . ID=Physo140673.2;Parent=Physo140673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_88 . CDS 131976 132084 . - 0 ID=Physo140673;Parent=Physo140673;rank=1 scaffold_88 . exon 131976 132331 . - . ID=Physo140673.1;Parent=Physo140673;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_88 ensembl protein_coding_gene 132377 135701 . + . ID=Physo140674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880046;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 132377 135701 . + . ID=Physo140674;Parent=Physo140674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 132377 132990 . + 0 ID=Physo140674;Parent=Physo140674;rank=1 scaffold_88 . exon 132377 132990 . + . ID=Physo140674.1;Parent=Physo140674;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 133250 134154 . + 0 ID=Physo140674;Parent=Physo140674;rank=2 scaffold_88 . exon 133250 134154 . + . ID=Physo140674.2;Parent=Physo140674;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 134305 134708 . + 0 ID=Physo140674;Parent=Physo140674;rank=3 scaffold_88 . exon 134305 134708 . + . ID=Physo140674.3;Parent=Physo140674;constitutive=1;ensembl_phase=1;rank=3 scaffold_88 . CDS 134733 135039 . + 0 ID=Physo140674;Parent=Physo140674;rank=4 scaffold_88 . exon 134733 135039 . + . ID=Physo140674.4;Parent=Physo140674;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_88 . CDS 135088 135357 . + 0 ID=Physo140674;Parent=Physo140674;rank=5 scaffold_88 . exon 135088 135357 . + . ID=Physo140674.5;Parent=Physo140674;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_88 . CDS 135513 135568 . + 0 ID=Physo140674;Parent=Physo140674;rank=6 scaffold_88 . exon 135513 135701 . + . ID=Physo140674.6;Parent=Physo140674;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_88 . repeat_region 141251 141258 . ? . description=dust scaffold_88 . repeat_region 143008 143050 . ? . description=trf scaffold_88 . repeat_region 145121 145162 . ? . description=trf scaffold_88 ensembl protein_coding_gene 141371 142090 . + . ID=Physo140675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880047;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 141371 142090 . + . ID=Physo140675;Parent=Physo140675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 141371 142090 . + 0 ID=Physo140675;Parent=Physo140675;rank=1 scaffold_88 . exon 141371 142090 . + . ID=Physo140675.1;Parent=Physo140675;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 142320 144256 . - . ID=Physo140676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880048;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 142320 144256 . - . ID=Physo140676;Parent=Physo140676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 142320 142336 . - 0 ID=Physo140676;Parent=Physo140676;rank=6 scaffold_88 . exon 142320 142336 . - . ID=Physo140676.6;Parent=Physo140676;constitutive=1;ensembl_phase=1;rank=6 scaffold_88 . CDS 142362 142818 . - 0 ID=Physo140676;Parent=Physo140676;rank=5 scaffold_88 . exon 142362 142818 . - . ID=Physo140676.5;Parent=Physo140676;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_88 . CDS 143009 143330 . - 0 ID=Physo140676;Parent=Physo140676;rank=4 scaffold_88 . exon 143009 143330 . - . ID=Physo140676.4;Parent=Physo140676;constitutive=1;ensembl_phase=2;rank=4 scaffold_88 . CDS 143428 143480 . - 0 ID=Physo140676;Parent=Physo140676;rank=3 scaffold_88 . exon 143428 143480 . - . ID=Physo140676.3;Parent=Physo140676;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_88 . CDS 143541 143662 . - 0 ID=Physo140676;Parent=Physo140676;rank=2 scaffold_88 . exon 143541 143662 . - . ID=Physo140676.2;Parent=Physo140676;constitutive=1;ensembl_phase=1;rank=2 scaffold_88 . CDS 144058 144256 . - 0 ID=Physo140676;Parent=Physo140676;rank=1 scaffold_88 . exon 144058 144256 . - . ID=Physo140676.1;Parent=Physo140676;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . biological_region 154940 154942 0.999 + . logic_name=eponine scaffold_88 . biological_region 154950 154953 0.999 - . logic_name=eponine scaffold_88 . biological_region 155032 155041 0.999 - . logic_name=eponine scaffold_88 . repeat_region 155920 156057 . - . description=GypsyPi-1c_I-int scaffold_88 ensembl protein_coding_gene 150460 150846 . - . ID=Physo140677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880049;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 150460 150846 . - . ID=Physo140677;Parent=Physo140677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 150460 150846 . - 0 ID=Physo140677;Parent=Physo140677;rank=1 scaffold_88 . exon 150460 150846 . - . ID=Physo140677.1;Parent=Physo140677;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 155184 156549 . + . ID=Physo140678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880050;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 155184 156549 . + . ID=Physo140678;Parent=Physo140678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 155184 155738 . + 0 ID=Physo140678;Parent=Physo140678;rank=1 scaffold_88 . exon 155184 155738 . + . ID=Physo140678.1;Parent=Physo140678;constitutive=1;rank=1 scaffold_88 . CDS 156025 156549 . + 0 ID=Physo140678;Parent=Physo140678;rank=2 scaffold_88 . repeat_region 156453 156500 . ? . description=trf scaffold_88 . repeat_region 163640 163663 . ? . description=trf scaffold_88 . exon 156025 156549 . + . ID=Physo140678.2;Parent=Physo140678;constitutive=1;rank=2 scaffold_88 ensembl protein_coding_gene 156855 161541 . - . ID=Physo140679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880051;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 156855 161541 . - . ID=Physo140679;Parent=Physo140679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 156855 156859 . - 0 ID=Physo140679;Parent=Physo140679;rank=8 scaffold_88 . exon 156855 156859 . - . ID=Physo140679.8;Parent=Physo140679;constitutive=1;ensembl_phase=1;rank=8 scaffold_88 . CDS 156913 157234 . - 0 ID=Physo140679;Parent=Physo140679;rank=7 scaffold_88 . exon 156913 157234 . - . ID=Physo140679.7;Parent=Physo140679;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_88 . CDS 157283 158470 . - 0 ID=Physo140679;Parent=Physo140679;rank=6 scaffold_88 . exon 157283 158470 . - . ID=Physo140679.6;Parent=Physo140679;constitutive=1;rank=6 scaffold_88 . CDS 158497 158683 . - 0 ID=Physo140679;Parent=Physo140679;rank=5 scaffold_88 . exon 158497 158683 . - . ID=Physo140679.5;Parent=Physo140679;constitutive=1;ensembl_phase=2;rank=5 scaffold_88 . CDS 158909 159350 . - 0 ID=Physo140679;Parent=Physo140679;rank=4 scaffold_88 . exon 158909 159350 . - . ID=Physo140679.4;Parent=Physo140679;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_88 . CDS 159595 160233 . - 0 ID=Physo140679;Parent=Physo140679;rank=3 scaffold_88 . exon 159595 160233 . - . ID=Physo140679.3;Parent=Physo140679;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_88 . CDS 160306 160461 . - 0 ID=Physo140679;Parent=Physo140679;rank=2 scaffold_88 . exon 160306 160461 . - . ID=Physo140679.2;Parent=Physo140679;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_88 . CDS 160863 161541 . - 0 ID=Physo140679;Parent=Physo140679;rank=1 scaffold_88 . exon 160863 161541 . - . ID=Physo140679.1;Parent=Physo140679;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 ensembl protein_coding_gene 164449 166709 . + . ID=Physo140680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880052;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 164449 166709 . + . ID=Physo140680;Parent=Physo140680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 164449 164502 . + 0 ID=Physo140680;Parent=Physo140680;rank=1 scaffold_88 . exon 164449 164502 . + . ID=Physo140680.1;Parent=Physo140680;constitutive=1;rank=1 scaffold_88 . CDS 164605 165429 . + 0 ID=Physo140680;Parent=Physo140680;rank=2 scaffold_88 . exon 164605 165429 . + . ID=Physo140680.2;Parent=Physo140680;constitutive=1;rank=2 scaffold_88 . CDS 165626 166425 . + 0 ID=Physo140680;Parent=Physo140680;rank=3 scaffold_88 . exon 165626 166425 . + . ID=Physo140680.3;Parent=Physo140680;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_88 . CDS 166451 166562 . + 0 ID=Physo140680;Parent=Physo140680;rank=4 scaffold_88 . CDS 166596 166709 . + 0 ID=Physo140680;Parent=Physo140680;rank=5 scaffold_88 . biological_region 167141 167142 0.999 - . logic_name=eponine scaffold_88 . repeat_region 172460 172764 . - . description=GypsyPi-1c_LTR scaffold_88 . biological_region 173644 173646 0.999 - . logic_name=eponine scaffold_88 . repeat_region 175033 175309 . - . description=GypsyPi-1c_I-int scaffold_88 . repeat_region 175477 175656 . - . description=GypsyPi-1c_I-int scaffold_88 . exon 166451 166562 . + . ID=Physo140680.4;Parent=Physo140680;constitutive=1;ensembl_phase=2;rank=4 scaffold_88 . exon 166596 166709 . + . ID=Physo140680.5;Parent=Physo140680;constitutive=1;rank=5 scaffold_88 ensembl protein_coding_gene 168459 169633 . - . ID=Physo140681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880053;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 168459 169633 . - . ID=Physo140681;Parent=Physo140681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 168459 168485 . - 0 ID=Physo140681;Parent=Physo140681;rank=3 scaffold_88 . exon 168459 168485 . - . ID=Physo140681.3;Parent=Physo140681;constitutive=1;rank=3 scaffold_88 . CDS 168587 168698 . - 0 ID=Physo140681;Parent=Physo140681;rank=2 scaffold_88 . exon 168587 168698 . - . ID=Physo140681.2;Parent=Physo140681;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 168765 169633 . - 0 ID=Physo140681;Parent=Physo140681;rank=1 scaffold_88 . exon 168765 169633 . - . ID=Physo140681.1;Parent=Physo140681;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . repeat_region 175710 175753 . ? . description=trf scaffold_88 . repeat_region 177179 177196 . ? . description=dust scaffold_88 . repeat_region 183721 183756 . ? . description=trf scaffold_88 . repeat_region 184077 184126 . ? . description=trf scaffold_88 . repeat_region 184083 184115 . ? . description=trf scaffold_88 . repeat_region 184882 185264 . ? . description=trf scaffold_88 . biological_region 187748 187751 0.999 + . logic_name=eponine scaffold_88 . biological_region 187774 187777 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 186171 187852 . - . ID=Physo140682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880054;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 186171 187852 . - . ID=Physo140682;Parent=Physo140682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 186171 186271 . - . ID=Physo140682.2;Parent=Physo140682;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_88 . CDS 186223 186271 . - 0 ID=Physo140682;Parent=Physo140682;rank=2 scaffold_88 . CDS 186333 187852 . - 0 ID=Physo140682;Parent=Physo140682;rank=1 scaffold_88 . exon 186333 187852 . - . ID=Physo140682.1;Parent=Physo140682;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 189796 190137 . - . ID=Physo140683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880055;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 189796 190137 . - . ID=Physo140683;Parent=Physo140683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 189796 190137 . - 0 ID=Physo140683;Parent=Physo140683;rank=1 scaffold_88 . exon 189796 190137 . - . ID=Physo140683.1;Parent=Physo140683;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 191448 192230 . + . ID=Physo140684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880056;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 191448 192230 . + . ID=Physo140684;Parent=Physo140684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 191448 192230 . + 0 ID=Physo140684;Parent=Physo140684;rank=1 scaffold_88 . exon 191448 192230 . + . ID=Physo140684.1;Parent=Physo140684;constitutive=1;rank=1 scaffold_88 . repeat_region 197101 197237 . ? . description=trf scaffold_88 . repeat_region 197127 197211 . ? . description=trf scaffold_88 . repeat_region 197138 197201 . ? . description=dust scaffold_88 . repeat_region 197141 197201 . ? . description=trf scaffold_88 . repeat_region 197256 197299 . ? . description=trf scaffold_88 . repeat_region 197562 197581 . ? . description=trf scaffold_88 . repeat_region 197621 197678 . ? . description=trf scaffold_88 . repeat_region 197781 197791 . ? . description=dust scaffold_88 . repeat_region 199139 199185 . ? . description=trf scaffold_88 . repeat_region 202366 202413 . ? . description=trf scaffold_88 . repeat_region 202902 202909 . ? . description=dust scaffold_88 ensembl protein_coding_gene 196985 197767 . - . ID=Physo140685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880057;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 196985 197767 . - . ID=Physo140685;Parent=Physo140685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 196985 197767 . - 0 ID=Physo140685;Parent=Physo140685;rank=1 scaffold_88 . exon 196985 197767 . - . ID=Physo140685.1;Parent=Physo140685;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 203095 212971 . - . ID=Physo140686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880058;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 203095 212971 . - . ID=Physo140686;Parent=Physo140686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 203095 209475 . - 0 ID=Physo140686;Parent=Physo140686;rank=3 scaffold_88 . exon 203095 209475 . - . ID=Physo140686.3;Parent=Physo140686;constitutive=1;rank=3 scaffold_88 . CDS 209952 209981 . - 0 ID=Physo140686;Parent=Physo140686;rank=2 scaffold_88 . CDS 210002 212971 . - 0 ID=Physo140686;Parent=Physo140686;rank=1 scaffold_88 . biological_region 209046 209049 0.999 + . logic_name=eponine scaffold_88 . biological_region 209576 209579 0.999 - . logic_name=eponine scaffold_88 . biological_region 209642 209643 0.999 - . logic_name=eponine scaffold_88 . biological_region 210183 210189 0.999 - . logic_name=eponine scaffold_88 . biological_region 210849 210851 0.999 + . logic_name=eponine scaffold_88 . biological_region 213156 213157 0.999 + . logic_name=eponine scaffold_88 . biological_region 213194 213195 0.999 - . logic_name=eponine scaffold_88 . biological_region 213841 213845 0.999 + . logic_name=eponine scaffold_88 . exon 209952 209981 . - . ID=Physo140686.2;Parent=Physo140686;constitutive=1;rank=2 scaffold_88 . exon 210002 212971 . - . ID=Physo140686.1;Parent=Physo140686;constitutive=1;rank=1 scaffold_88 . repeat_region 218833 218870 . ? . description=trf scaffold_88 . repeat_region 219480 219507 . ? . description=trf scaffold_88 . repeat_region 221270 221280 . ? . description=dust scaffold_88 ensembl protein_coding_gene 217343 218510 . - . ID=Physo140688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880060;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 217343 218510 . - . ID=Physo140688;Parent=Physo140688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 217343 218510 . - . ID=Physo140688.1;Parent=Physo140688;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_88 . CDS 217479 218510 . - 0 ID=Physo140688;Parent=Physo140688;rank=1 scaffold_88 ensembl protein_coding_gene 218707 219813 . + . ID=Physo140689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880061;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 218707 219813 . + . ID=Physo140689;Parent=Physo140689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 218707 218817 . + 0 ID=Physo140689;Parent=Physo140689;rank=1 scaffold_88 . exon 218707 218817 . + . ID=Physo140689.1;Parent=Physo140689;constitutive=1;rank=1 scaffold_88 . CDS 218902 219813 . + 0 ID=Physo140689;Parent=Physo140689;rank=2 scaffold_88 . exon 218902 219813 . + . ID=Physo140689.2;Parent=Physo140689;constitutive=1;rank=2 scaffold_88 ensembl protein_coding_gene 220247 222621 . - . ID=Physo140690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880062;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 220247 222621 . - . ID=Physo140690;Parent=Physo140690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 220247 220256 . - 0 ID=Physo140690;Parent=Physo140690;rank=4 scaffold_88 . exon 220247 220256 . - . ID=Physo140690.4;Parent=Physo140690;constitutive=1;ensembl_phase=2;rank=4 scaffold_88 . CDS 220276 220892 . - 0 ID=Physo140690;Parent=Physo140690;rank=3 scaffold_88 . exon 220276 220892 . - . ID=Physo140690.3;Parent=Physo140690;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_88 . CDS 221398 221401 . - 0 ID=Physo140690;Parent=Physo140690;rank=2 scaffold_88 . exon 221398 221401 . - . ID=Physo140690.2;Parent=Physo140690;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 221672 222621 . - 0 ID=Physo140690;Parent=Physo140690;rank=1 scaffold_88 . exon 221672 222621 . - . ID=Physo140690.1;Parent=Physo140690;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 222917 226777 . + . ID=Physo140691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880063;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 222917 226777 . + . ID=Physo140691;Parent=Physo140691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 222917 226777 . + 0 ID=Physo140691;Parent=Physo140691;rank=1 scaffold_88 . exon 222917 226777 . + . ID=Physo140691.1;Parent=Physo140691;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 215533 217208 . - . ID=Physo158186;biotype=protein_coding;external_name=C_scaffold_88000014;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 215533 217208 . - . ID=Physo158186;Parent=Physo158186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 215533 215535 . - 0 ID=Physo158186;Parent=Physo158186;rank=5 scaffold_88 . exon 215533 215535 . - . ID=Physo158186.5;Parent=Physo158186;constitutive=1;rank=5 scaffold_88 . CDS 215571 215971 . - 0 ID=Physo158186;Parent=Physo158186;rank=4 scaffold_88 . exon 215571 215971 . - . ID=Physo158186.4;Parent=Physo158186;constitutive=1;ensembl_phase=1;rank=4 scaffold_88 . CDS 216161 216289 . - 0 ID=Physo158186;Parent=Physo158186;rank=3 scaffold_88 . exon 216161 216289 . - . ID=Physo158186.3;Parent=Physo158186;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_88 . CDS 216470 216833 . - 0 ID=Physo158186;Parent=Physo158186;rank=2 scaffold_88 . exon 216470 216833 . - . ID=Physo158186.2;Parent=Physo158186;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_88 . CDS 216861 217208 . - 0 ID=Physo158186;Parent=Physo158186;rank=1 scaffold_88 . exon 216861 217208 . - . ID=Physo158186.1;Parent=Physo158186;constitutive=1;rank=1 scaffold_88 . biological_region 229357 229359 0.999 + . logic_name=eponine scaffold_88 . biological_region 229405 229407 0.999 - . logic_name=eponine scaffold_88 . biological_region 229437 229437 0.999 + . logic_name=eponine scaffold_88 . biological_region 229545 229548 0.999 - . logic_name=eponine scaffold_88 . biological_region 229580 229587 0.999 - . logic_name=eponine scaffold_88 . biological_region 229661 229665 0.999 + . logic_name=eponine scaffold_88 . biological_region 229682 229686 0.999 + . logic_name=eponine scaffold_88 . biological_region 229739 229739 0.999 - . logic_name=eponine scaffold_88 . biological_region 229855 229859 0.999 - . logic_name=eponine scaffold_88 . biological_region 229894 229897 0.999 + . logic_name=eponine scaffold_88 . biological_region 229912 229919 0.999 - . logic_name=eponine scaffold_88 . biological_region 230006 230010 0.999 - . logic_name=eponine scaffold_88 . biological_region 230196 230203 0.999 + . logic_name=eponine scaffold_88 . biological_region 230224 230227 0.999 + . logic_name=eponine scaffold_88 . biological_region 230266 230271 0.999 + . logic_name=eponine scaffold_88 . biological_region 230287 230292 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 229224 231028 . + . ID=Physo140692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880064;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 229224 231028 . + . ID=Physo140692;Parent=Physo140692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 229224 231028 . + . ID=Physo140692.1;Parent=Physo140692;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 229261 230865 . + 0 ID=Physo140692;Parent=Physo140692;rank=1 scaffold_88 . repeat_region 235954 236012 . ? . description=dust scaffold_88 . repeat_region 238304 238737 . ? . description=trf scaffold_88 . repeat_region 241800 241819 . ? . description=trf scaffold_88 ensembl protein_coding_gene 235357 236660 . + . ID=Physo140693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880065;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 235357 236660 . + . ID=Physo140693;Parent=Physo140693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 235357 236660 . + . ID=Physo140693.1;Parent=Physo140693;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 235429 236565 . + 0 ID=Physo140693;Parent=Physo140693;rank=1 scaffold_88 ensembl protein_coding_gene 237047 238801 . - . ID=Physo140694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880066;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 237047 238801 . - . ID=Physo140694;Parent=Physo140694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 237047 238801 . - 0 ID=Physo140694;Parent=Physo140694;rank=1 scaffold_88 . exon 237047 238801 . - . ID=Physo140694.1;Parent=Physo140694;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 240352 242329 . - . ID=Physo140695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880067;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 240352 242329 . - . ID=Physo140695;Parent=Physo140695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 240352 242329 . - . ID=Physo140695.1;Parent=Physo140695;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_88 . CDS 240494 242329 . - 0 ID=Physo140695;Parent=Physo140695;rank=1 scaffold_88 . biological_region 248995 248997 0.999 + . logic_name=eponine scaffold_88 . biological_region 250978 250981 0.999 + . logic_name=eponine scaffold_88 . biological_region 251057 251062 0.999 - . logic_name=eponine scaffold_88 . biological_region 251650 251655 0.999 + . logic_name=eponine scaffold_88 . biological_region 251710 251715 0.999 - . logic_name=eponine scaffold_88 ensembl protein_coding_gene 244953 246217 . - . ID=Physo140696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880068;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 244953 246217 . - . ID=Physo140696;Parent=Physo140696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 244953 245213 . - 0 ID=Physo140696;Parent=Physo140696;rank=2 scaffold_88 . exon 244953 245213 . - . ID=Physo140696.2;Parent=Physo140696;constitutive=1;rank=2 scaffold_88 . CDS 245591 246217 . - 0 ID=Physo140696;Parent=Physo140696;rank=1 scaffold_88 . exon 245591 246217 . - . ID=Physo140696.1;Parent=Physo140696;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 250785 251993 . - . ID=Physo140697;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880069;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 250785 251993 . - . ID=Physo140697;Parent=Physo140697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 250785 251921 . - 0 ID=Physo140697;Parent=Physo140697;rank=1 scaffold_88 . exon 250785 251993 . - . ID=Physo140697.1;Parent=Physo140697;constitutive=1;ensembl_phase=-1;rank=1 scaffold_88 ensembl protein_coding_gene 257645 257818 . - . ID=Physo121227;biotype=protein_coding;external_name=estExt_Genewise1.C_880058;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 257645 257818 . - . ID=Physo121227;Parent=Physo121227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 257645 257818 . - . ID=Physo121227.1;Parent=Physo121227;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 257726 257812 . - 0 ID=Physo121227;Parent=Physo121227;rank=1 scaffold_88 ensembl protein_coding_gene 254360 256083 . - . ID=Physo140698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880070;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 254360 256083 . - . ID=Physo140698;Parent=Physo140698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 254360 254440 . - 0 ID=Physo140698;Parent=Physo140698;rank=5 scaffold_88 . exon 254360 254440 . - . ID=Physo140698.5;Parent=Physo140698;constitutive=1;rank=5 scaffold_88 . CDS 254510 255407 . - 0 ID=Physo140698;Parent=Physo140698;rank=4 scaffold_88 . exon 254510 255407 . - . ID=Physo140698.4;Parent=Physo140698;constitutive=1;ensembl_phase=2;rank=4 scaffold_88 . CDS 255437 255824 . - 0 ID=Physo140698;Parent=Physo140698;rank=3 scaffold_88 . exon 255437 255824 . - . ID=Physo140698.3;Parent=Physo140698;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_88 . CDS 255851 255989 . - 0 ID=Physo140698;Parent=Physo140698;rank=2 scaffold_88 . exon 255851 255989 . - . ID=Physo140698.2;Parent=Physo140698;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_88 . CDS 256060 256083 . - 0 ID=Physo140698;Parent=Physo140698;rank=1 scaffold_88 . exon 256060 256083 . - . ID=Physo140698.1;Parent=Physo140698;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 259426 262894 . - . ID=Physo140699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880071;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 259426 262894 . - . ID=Physo140699;Parent=Physo140699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 259426 259495 . - 0 ID=Physo140699;Parent=Physo140699;rank=7 scaffold_88 . exon 259426 259495 . - . ID=Physo140699.7;Parent=Physo140699;constitutive=1;ensembl_phase=2;rank=7 scaffold_88 . CDS 259701 259824 . - 0 ID=Physo140699;Parent=Physo140699;rank=6 scaffold_88 . exon 259701 259824 . - . ID=Physo140699.6;Parent=Physo140699;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_88 . CDS 260020 260957 . - 0 ID=Physo140699;Parent=Physo140699;rank=5 scaffold_88 . exon 260020 260957 . - . ID=Physo140699.5;Parent=Physo140699;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_88 . CDS 261202 261512 . - 0 ID=Physo140699;Parent=Physo140699;rank=4 scaffold_88 . exon 261202 261512 . - . ID=Physo140699.4;Parent=Physo140699;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_88 . CDS 261642 261664 . - 0 ID=Physo140699;Parent=Physo140699;rank=3 scaffold_88 . exon 261642 261664 . - . ID=Physo140699.3;Parent=Physo140699;constitutive=1;ensembl_phase=1;rank=3 scaffold_88 . CDS 261726 262459 . - 0 ID=Physo140699;Parent=Physo140699;rank=2 scaffold_88 . exon 261726 262459 . - . ID=Physo140699.2;Parent=Physo140699;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 262509 262894 . - 0 ID=Physo140699;Parent=Physo140699;rank=1 scaffold_88 . exon 262509 262894 . - . ID=Physo140699.1;Parent=Physo140699;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . biological_region 264733 264735 0.999 - . logic_name=eponine scaffold_88 . biological_region 265387 265390 0.999 + . logic_name=eponine scaffold_88 . repeat_region 265912 265919 . ? . description=dust scaffold_88 . biological_region 266321 266326 0.999 - . logic_name=eponine scaffold_88 . biological_region 266368 266368 0.999 - . logic_name=eponine scaffold_88 . biological_region 266377 266382 0.999 + . logic_name=eponine scaffold_88 . biological_region 266388 266391 0.999 - . logic_name=eponine scaffold_88 . biological_region 266411 266415 0.999 - . logic_name=eponine scaffold_88 . biological_region 268963 268965 0.999 - . logic_name=eponine scaffold_88 . biological_region 269328 269331 0.999 - . logic_name=eponine scaffold_88 . repeat_region 271007 271042 . ? . description=trf scaffold_88 . biological_region 271836 271843 0.999 + . logic_name=eponine scaffold_88 . biological_region 272296 272297 0.999 + . logic_name=eponine scaffold_88 . biological_region 272657 272659 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 264273 265839 . + . ID=Physo140700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880072;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 264273 265839 . + . ID=Physo140700;Parent=Physo140700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 264273 264390 . + . ID=Physo140700.1;Parent=Physo140700;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_88 . CDS 264356 264390 . + 0 ID=Physo140700;Parent=Physo140700;rank=1 scaffold_88 . CDS 264568 264706 . + 0 ID=Physo140700;Parent=Physo140700;rank=2 scaffold_88 . exon 264568 264706 . + . ID=Physo140700.2;Parent=Physo140700;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 264796 265839 . + 0 ID=Physo140700;Parent=Physo140700;rank=3 scaffold_88 . exon 264796 265839 . + . ID=Physo140700.3;Parent=Physo140700;constitutive=1;rank=3 scaffold_88 ensembl protein_coding_gene 265941 273669 . - . ID=Physo140701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880073;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 265941 273669 . - . ID=Physo140701;Parent=Physo140701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 265941 273540 . - 0 ID=Physo140701;Parent=Physo140701;rank=2 scaffold_88 . exon 265941 273540 . - . ID=Physo140701.2;Parent=Physo140701;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 273626 273669 . - 0 ID=Physo140701;Parent=Physo140701;rank=1 scaffold_88 . exon 273626 273669 . - . ID=Physo140701.1;Parent=Physo140701;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 275069 276301 . + . ID=Physo140702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880074;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 275069 276301 . + . ID=Physo140702;Parent=Physo140702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 275069 275429 . + 0 ID=Physo140702;Parent=Physo140702;rank=1 scaffold_88 . exon 275069 275429 . + . ID=Physo140702.1;Parent=Physo140702;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 . CDS 275497 275741 . + 0 ID=Physo140702;Parent=Physo140702;rank=2 scaffold_88 . exon 275497 275741 . + . ID=Physo140702.2;Parent=Physo140702;constitutive=1;ensembl_phase=1;rank=2 scaffold_88 . CDS 275816 275885 . + 0 ID=Physo140702;Parent=Physo140702;rank=3 scaffold_88 . exon 275816 275885 . + . ID=Physo140702.3;Parent=Physo140702;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_88 . CDS 275958 276107 . + 0 ID=Physo140702;Parent=Physo140702;rank=4 scaffold_88 . exon 275958 276107 . + . ID=Physo140702.4;Parent=Physo140702;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_88 . CDS 276174 276301 . + 0 ID=Physo140702;Parent=Physo140702;rank=5 scaffold_88 . exon 276174 276301 . + . ID=Physo140702.5;Parent=Physo140702;constitutive=1;ensembl_phase=1;rank=5 scaffold_88 ensembl protein_coding_gene 277357 280703 . - . ID=Physo140703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880075;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 277357 280703 . - . ID=Physo140703;Parent=Physo140703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 277357 277765 . - . ID=Physo140703.9;Parent=Physo140703;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_88 . CDS 277394 277765 . - 0 ID=Physo140703;Parent=Physo140703;rank=9 scaffold_88 . CDS 277965 278004 . - 0 ID=Physo140703;Parent=Physo140703;rank=8 scaffold_88 . exon 277965 278004 . - . ID=Physo140703.8;Parent=Physo140703;constitutive=1;ensembl_phase=2;rank=8 scaffold_88 . CDS 278181 278862 . - 0 ID=Physo140703;Parent=Physo140703;rank=7 scaffold_88 . exon 278181 278862 . - . ID=Physo140703.7;Parent=Physo140703;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_88 . CDS 278898 278979 . - 0 ID=Physo140703;Parent=Physo140703;rank=6 scaffold_88 . exon 278898 278979 . - . ID=Physo140703.6;Parent=Physo140703;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_88 . CDS 279116 279172 . - 0 ID=Physo140703;Parent=Physo140703;rank=5 scaffold_88 . exon 279116 279172 . - . ID=Physo140703.5;Parent=Physo140703;constitutive=1;rank=5 scaffold_88 . CDS 279396 279728 . - 0 ID=Physo140703;Parent=Physo140703;rank=4 scaffold_88 . exon 279396 279728 . - . ID=Physo140703.4;Parent=Physo140703;constitutive=1;rank=4 scaffold_88 . CDS 280071 280258 . - 0 ID=Physo140703;Parent=Physo140703;rank=3 scaffold_88 . exon 280071 280258 . - . ID=Physo140703.3;Parent=Physo140703;constitutive=1;ensembl_phase=1;rank=3 scaffold_88 . CDS 280412 280516 . - 0 ID=Physo140703;Parent=Physo140703;rank=2 scaffold_88 . exon 280412 280516 . - . ID=Physo140703.2;Parent=Physo140703;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_88 . CDS 280661 280703 . - 0 ID=Physo140703;Parent=Physo140703;rank=1 scaffold_88 . exon 280661 280703 . - . ID=Physo140703.1;Parent=Physo140703;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_88 ensembl protein_coding_gene 280845 281952 . + . ID=Physo140704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880076;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 280845 281952 . + . ID=Physo140704;Parent=Physo140704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 280845 281428 . + 0 ID=Physo140704;Parent=Physo140704;rank=1 scaffold_88 . exon 280845 281428 . + . ID=Physo140704.1;Parent=Physo140704;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 281472 281952 . + 0 ID=Physo140704;Parent=Physo140704;rank=2 scaffold_88 . exon 281472 281952 . + . ID=Physo140704.2;Parent=Physo140704;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 ensembl protein_coding_gene 282223 282936 . + . ID=Physo140705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880077;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 282223 282936 . + . ID=Physo140705;Parent=Physo140705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 282223 282936 . + . ID=Physo140705.1;Parent=Physo140705;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 282303 282881 . + 0 ID=Physo140705;Parent=Physo140705;rank=1 scaffold_88 . biological_region 285102 285103 0.999 + . logic_name=eponine scaffold_88 . biological_region 285746 285750 0.999 + . logic_name=eponine scaffold_88 . repeat_region 288318 288518 . - . description=Polinton-1_PI scaffold_88 . biological_region 289246 289247 0.999 - . logic_name=eponine scaffold_88 . repeat_region 290663 290670 . ? . description=dust scaffold_88 . biological_region 290920 290923 0.999 + . logic_name=eponine scaffold_88 . biological_region 290999 291004 0.999 - . logic_name=eponine scaffold_88 . repeat_region 291286 291327 . ? . description=dust scaffold_88 . repeat_region 291295 291324 . ? . description=trf scaffold_88 . biological_region 291583 291588 0.999 + . logic_name=eponine scaffold_88 . biological_region 291643 291648 0.999 - . logic_name=eponine scaffold_88 . biological_region 291672 291674 0.999 + . logic_name=eponine scaffold_88 . biological_region 291701 291704 0.999 + . logic_name=eponine scaffold_88 ensembl protein_coding_gene 283095 283994 . + . ID=Physo140706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880078;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 283095 283994 . + . ID=Physo140706;Parent=Physo140706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 283095 283307 . + 0 ID=Physo140706;Parent=Physo140706;rank=1 scaffold_88 . exon 283095 283307 . + . ID=Physo140706.1;Parent=Physo140706;constitutive=1;rank=1 scaffold_88 . CDS 283391 283800 . + 0 ID=Physo140706;Parent=Physo140706;rank=2 scaffold_88 . exon 283391 283800 . + . ID=Physo140706.2;Parent=Physo140706;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_88 . CDS 283868 283994 . + 0 ID=Physo140706;Parent=Physo140706;rank=3 scaffold_88 . exon 283868 283994 . + . ID=Physo140706.3;Parent=Physo140706;constitutive=1;ensembl_phase=2;rank=3 scaffold_88 ensembl protein_coding_gene 284410 285243 . - . ID=Physo140707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880079;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 284410 285243 . - . ID=Physo140707;Parent=Physo140707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 284410 284890 . - . ID=Physo140707.3;Parent=Physo140707;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_88 . CDS 284440 284890 . - 0 ID=Physo140707;Parent=Physo140707;rank=3 scaffold_88 . CDS 284968 285018 . - 0 ID=Physo140707;Parent=Physo140707;rank=2 scaffold_88 . exon 284968 285018 . - . ID=Physo140707.2;Parent=Physo140707;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_88 . CDS 285098 285243 . - 0 ID=Physo140707;Parent=Physo140707;rank=1 scaffold_88 . exon 285098 285243 . - . ID=Physo140707.1;Parent=Physo140707;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 288763 290241 . - . ID=Physo140708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880080;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 288763 290241 . - . ID=Physo140708;Parent=Physo140708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 288763 290241 . - . ID=Physo140708.1;Parent=Physo140708;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_88 . CDS 288826 289302 . - 0 ID=Physo140708;Parent=Physo140708;rank=1 scaffold_88 ensembl protein_coding_gene 290727 291854 . - . ID=Physo140709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880081;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 290727 291854 . - . ID=Physo140709;Parent=Physo140709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 290727 291854 . - 0 ID=Physo140709;Parent=Physo140709;rank=1 scaffold_88 . exon 290727 291854 . - . ID=Physo140709.1;Parent=Physo140709;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 294256 296859 . + . ID=Physo140712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880084;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 294256 296859 . + . ID=Physo140712;Parent=Physo140712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 294256 296859 . + 0 ID=Physo140712;Parent=Physo140712;rank=1 scaffold_88 . exon 294256 296859 . + . ID=Physo140712.1;Parent=Physo140712;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 297207 302130 . + . ID=Physo140713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880085;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 297207 302130 . + . ID=Physo140713;Parent=Physo140713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 297207 302093 . + 0 ID=Physo140713;Parent=Physo140713;rank=1 scaffold_88 . exon 297207 302093 . + . ID=Physo140713.1;Parent=Physo140713;constitutive=1;rank=1 scaffold_88 . CDS 302116 302130 . + 0 ID=Physo140713;Parent=Physo140713;rank=2 scaffold_88 . exon 302116 302130 . + . ID=Physo140713.2;Parent=Physo140713;constitutive=1;rank=2 scaffold_88 ensembl protein_coding_gene 302195 304524 . - . ID=Physo140714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880086;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 302195 304524 . - . ID=Physo140714;Parent=Physo140714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . exon 302195 304524 . - . ID=Physo140714.1;Parent=Physo140714;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_88 . CDS 302275 304524 . - 0 ID=Physo140714;Parent=Physo140714;rank=1 scaffold_88 ensembl protein_coding_gene 292645 292947 . + . ID=Physo158190;biotype=protein_coding;external_name=C_scaffold_88000018;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 292645 292947 . + . ID=Physo158190;Parent=Physo158190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 292645 292947 . + 0 ID=Physo158190;Parent=Physo158190;rank=1 scaffold_88 . exon 292645 292947 . + . ID=Physo158190.1;Parent=Physo158190;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 293169 294109 . + . ID=Physo158191;biotype=protein_coding;external_name=C_scaffold_88000019;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 293169 294109 . + . ID=Physo158191;Parent=Physo158191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 293169 293314 . + 0 ID=Physo158191;Parent=Physo158191;rank=1 scaffold_88 . exon 293169 293314 . + . ID=Physo158191.1;Parent=Physo158191;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . CDS 293395 293445 . + 0 ID=Physo158191;Parent=Physo158191;rank=2 scaffold_88 . exon 293395 293445 . + . ID=Physo158191.2;Parent=Physo158191;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_88 . CDS 293523 293697 . + 0 ID=Physo158191;Parent=Physo158191;rank=3 scaffold_88 . exon 293523 293697 . + . ID=Physo158191.3;Parent=Physo158191;constitutive=1;ensembl_phase=2;rank=3 scaffold_88 . CDS 293784 293877 . + 0 ID=Physo158191;Parent=Physo158191;rank=4 scaffold_88 . exon 293784 293877 . + . ID=Physo158191.4;Parent=Physo158191;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_88 . CDS 293943 294109 . + 0 ID=Physo158191;Parent=Physo158191;rank=5 scaffold_88 . exon 293943 294109 . + . ID=Physo158191.5;Parent=Physo158191;constitutive=1;ensembl_phase=1;rank=5 scaffold_88 . biological_region 302535 302535 0.999 + . logic_name=eponine scaffold_88 . biological_region 302613 302617 0.999 - . logic_name=eponine scaffold_88 . biological_region 302936 302937 0.999 + . logic_name=eponine scaffold_88 . biological_region 303459 303465 0.999 + . logic_name=eponine scaffold_88 . biological_region 303710 303712 0.999 + . logic_name=eponine scaffold_88 . biological_region 304060 304062 0.999 - . logic_name=eponine scaffold_88 . biological_region 304349 304350 0.999 - . logic_name=eponine scaffold_88 . repeat_region 304461 304522 . ? . description=dust scaffold_88 . repeat_region 304905 304946 . ? . description=trf scaffold_88 . biological_region 305341 305342 0.999 + . logic_name=eponine scaffold_88 . repeat_region 305779 305811 . ? . description=trf scaffold_88 . biological_region 306526 306526 0.999 + . logic_name=eponine scaffold_88 . repeat_region 307082 307134 . ? . description=trf scaffold_88 . biological_region 307652 307656 0.999 + . logic_name=eponine scaffold_88 . repeat_region 307819 307865 . ? . description=trf scaffold_88 ensembl protein_coding_gene 305842 306940 . - . ID=Physo140715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880087;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 305842 306940 . - . ID=Physo140715;Parent=Physo140715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 305842 305907 . - 0 ID=Physo140715;Parent=Physo140715;rank=3 scaffold_88 . exon 305842 305907 . - . ID=Physo140715.3;Parent=Physo140715;constitutive=1;rank=3 scaffold_88 . CDS 305984 306173 . - 0 ID=Physo140715;Parent=Physo140715;rank=2 scaffold_88 . exon 305984 306173 . - . ID=Physo140715.2;Parent=Physo140715;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 306246 306940 . - 0 ID=Physo140715;Parent=Physo140715;rank=1 scaffold_88 . exon 306246 306940 . - . ID=Physo140715.1;Parent=Physo140715;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 307686 308066 . - . ID=Physo140716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880088;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 307686 308066 . - . ID=Physo140716;Parent=Physo140716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 307686 308066 . - 0 ID=Physo140716;Parent=Physo140716;rank=1 scaffold_88 . exon 307686 308066 . - . ID=Physo140716.1;Parent=Physo140716;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 309611 310224 . + . ID=Physo140717;biotype=protein_coding;description=PsAvh252 [Source:UniProtKB/TrEMBL%3BAcc:E0W5I6];external_name=estExt_fgenesh1_pg.C_880089;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 309611 310224 . + . ID=Physo140717;Parent=Physo140717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 309611 310123 . + 0 ID=Physo140717;Parent=Physo140717;rank=1 scaffold_88 . exon 309611 310123 . + . ID=Physo140717.1;Parent=Physo140717;constitutive=1;rank=1 scaffold_88 . CDS 310219 310224 . + 0 ID=Physo140717;Parent=Physo140717;rank=2 scaffold_88 . exon 310219 310224 . + . ID=Physo140717.2;Parent=Physo140717;constitutive=1;rank=2 scaffold_88 ensembl protein_coding_gene 310633 311412 . - . ID=Physo140718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880090;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 310633 311412 . - . ID=Physo140718;Parent=Physo140718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 310633 311302 . - 0 ID=Physo140718;Parent=Physo140718;rank=2 scaffold_88 . exon 310633 311302 . - . ID=Physo140718.2;Parent=Physo140718;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 311378 311412 . - 0 ID=Physo140718;Parent=Physo140718;rank=1 scaffold_88 . exon 311378 311412 . - . ID=Physo140718.1;Parent=Physo140718;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 313009 313500 . + . ID=Physo140719;biotype=protein_coding;description=PsAvh253 [Source:UniProtKB/TrEMBL%3BAcc:E0W5I7];external_name=estExt_fgenesh1_pg.C_880091;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 313009 313500 . + . ID=Physo140719;Parent=Physo140719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 313009 313500 . + 0 ID=Physo140719;Parent=Physo140719;rank=1 scaffold_88 . exon 313009 313500 . + . ID=Physo140719.1;Parent=Physo140719;constitutive=1;rank=1 scaffold_88 ensembl protein_coding_gene 318041 318936 . - . ID=Physo140720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880092;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 318041 318936 . - . ID=Physo140720;Parent=Physo140720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 318041 318065 . - 0 ID=Physo140720;Parent=Physo140720;rank=2 scaffold_88 . exon 318041 318065 . - . ID=Physo140720.2;Parent=Physo140720;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 318152 318936 . - 0 ID=Physo140720;Parent=Physo140720;rank=1 scaffold_88 . exon 318152 318936 . - . ID=Physo140720.1;Parent=Physo140720;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 ensembl protein_coding_gene 319180 319879 . + . ID=Physo140721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880093;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 319180 319879 . + . ID=Physo140721;Parent=Physo140721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 319180 319695 . + 0 ID=Physo140721;Parent=Physo140721;rank=1 scaffold_88 . exon 319180 319695 . + . ID=Physo140721.1;Parent=Physo140721;constitutive=1;rank=1 scaffold_88 . CDS 319796 319879 . + 0 ID=Physo140721;Parent=Physo140721;rank=2 scaffold_88 . exon 319796 319879 . + . ID=Physo140721.2;Parent=Physo140721;constitutive=1;rank=2 scaffold_88 . biological_region 322131 322135 0.999 + . logic_name=eponine scaffold_88 . biological_region 323411 323413 0.999 - . logic_name=eponine scaffold_88 . repeat_region 324497 324658 . ? . description=trf scaffold_88 . biological_region 325708 325708 0.999 - . logic_name=eponine scaffold_88 . biological_region 325762 325765 0.999 + . logic_name=eponine scaffold_88 . biological_region 325796 325796 0.999 + . logic_name=eponine scaffold_88 . biological_region 325864 325874 0.999 - . logic_name=eponine scaffold_88 . biological_region 328268 328270 0.999 + . logic_name=eponine scaffold_88 . biological_region 328847 328848 0.999 - . logic_name=eponine scaffold_88 . repeat_region 330948 331242 . - . description=GypsyPi-1c_LTR scaffold_88 ensembl protein_coding_gene 326940 330933 . - . ID=Physo140722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880094;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 326940 330933 . - . ID=Physo140722;Parent=Physo140722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 326940 327144 . - 0 ID=Physo140722;Parent=Physo140722;rank=9 scaffold_88 . exon 326940 327144 . - . ID=Physo140722.9;Parent=Physo140722;constitutive=1;ensembl_phase=2;rank=9 scaffold_88 . CDS 327245 327376 . - 0 ID=Physo140722;Parent=Physo140722;rank=8 scaffold_88 . exon 327245 327376 . - . ID=Physo140722.8;Parent=Physo140722;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_88 . CDS 327470 327737 . - 0 ID=Physo140722;Parent=Physo140722;rank=7 scaffold_88 . exon 327470 327737 . - . ID=Physo140722.7;Parent=Physo140722;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_88 . CDS 327788 328259 . - 0 ID=Physo140722;Parent=Physo140722;rank=6 scaffold_88 . exon 327788 328259 . - . ID=Physo140722.6;Parent=Physo140722;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_88 . CDS 328313 328933 . - 0 ID=Physo140722;Parent=Physo140722;rank=5 scaffold_88 . exon 328313 328933 . - . ID=Physo140722.5;Parent=Physo140722;constitutive=1;rank=5 scaffold_88 . CDS 328977 329689 . - 0 ID=Physo140722;Parent=Physo140722;rank=4 scaffold_88 . exon 328977 329689 . - . ID=Physo140722.4;Parent=Physo140722;constitutive=1;ensembl_phase=1;rank=4 scaffold_88 . CDS 329725 329872 . - 0 ID=Physo140722;Parent=Physo140722;rank=3 scaffold_88 . exon 329725 329872 . - . ID=Physo140722.3;Parent=Physo140722;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_88 . CDS 330051 330084 . - 0 ID=Physo140722;Parent=Physo140722;rank=2 scaffold_88 . exon 330051 330084 . - . ID=Physo140722.2;Parent=Physo140722;constitutive=1;ensembl_phase=2;rank=2 scaffold_88 . CDS 330344 330933 . - 0 ID=Physo140722;Parent=Physo140722;rank=1 scaffold_88 . exon 330344 330933 . - . ID=Physo140722.1;Parent=Physo140722;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_88 . repeat_region 333230 333237 . ? . description=dust scaffold_88 . repeat_region 334305 334319 . ? . description=dust scaffold_88 . repeat_region 341114 341126 . ? . description=dust scaffold_88 . biological_region 343444 343445 0.999 + . logic_name=eponine scaffold_88 . biological_region 344681 344684 0.999 - . logic_name=eponine scaffold_88 . biological_region 345637 345642 0.999 - . logic_name=eponine scaffold_88 . repeat_region 346183 346263 . ? . description=trf scaffold_88 . repeat_region 346183 346272 . ? . description=trf scaffold_88 . repeat_region 346380 346429 . ? . description=trf scaffold_88 . repeat_region 346496 346551 . ? . description=trf scaffold_88 ensembl protein_coding_gene 342727 343575 . - . ID=Physo140723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_880095;logic_name=jgi_physo1_1 scaffold_88 ensembl transcript 342727 343575 . - . ID=Physo140723;Parent=Physo140723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_88 . CDS 342727 343380 . - 0 ID=Physo140723;Parent=Physo140723;rank=2 scaffold_88 . exon 342727 343380 . - . ID=Physo140723.2;Parent=Physo140723;constitutive=1;rank=2 scaffold_88 . CDS 343441 343575 . - 0 ID=Physo140723;Parent=Physo140723;rank=1 scaffold_88 . exon 343441 343575 . - . ID=Physo140723.1;Parent=Physo140723;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_81 1 358079 scaffold_81 . repeat_region 41 48 . ? . description=dust scaffold_81 . repeat_region 1166 8858 . ? . description=dust scaffold_81 . repeat_region 9599 9606 . ? . description=dust scaffold_81 . repeat_region 13344 13387 . ? . description=trf scaffold_81 . biological_region 14274 14276 0.999 - . logic_name=eponine scaffold_81 . biological_region 14351 14357 0.999 - . logic_name=eponine scaffold_81 . biological_region 14372 14381 0.999 - . logic_name=eponine scaffold_81 . biological_region 14381 14383 0.999 + . logic_name=eponine scaffold_81 . biological_region 14399 14403 0.999 - . logic_name=eponine scaffold_81 . repeat_region 14407 14426 . ? . description=trf scaffold_81 . biological_region 14409 14409 0.999 + . logic_name=eponine scaffold_81 . biological_region 14425 14436 0.999 - . logic_name=eponine scaffold_81 . biological_region 14428 14433 0.999 + . logic_name=eponine scaffold_81 . biological_region 14456 14456 0.999 + . logic_name=eponine scaffold_81 . biological_region 18904 18906 0.999 - . logic_name=eponine scaffold_81 . biological_region 18997 19000 0.999 + . logic_name=eponine scaffold_81 . biological_region 19158 19164 0.999 + . logic_name=eponine scaffold_81 . biological_region 19263 19265 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 12572 14001 . + . ID=Physo109254;biotype=protein_coding;description=Calcium-dependent protein 1 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U2];external_name=estExt_fgenesh1_pm.C_810001;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 12572 14001 . + . ID=Physo109254;Parent=Physo109254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 12572 12594 . + . ID=Physo109254.1;Parent=Physo109254;constitutive=1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 12586 12594 . + 0 ID=Physo109254;Parent=Physo109254;rank=1 scaffold_81 . CDS 12683 13891 . + 0 ID=Physo109254;Parent=Physo109254;rank=2 scaffold_81 . exon 12683 14001 . + . ID=Physo109254.2;Parent=Physo109254;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_81 ensembl protein_coding_gene 18438 19655 . - . ID=Physo109255;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810002;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 18438 19655 . - . ID=Physo109255;Parent=Physo109255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 18438 19655 . - . ID=Physo109255.1;Parent=Physo109255;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 18535 19623 . - 0 ID=Physo109255;Parent=Physo109255;rank=1 scaffold_81 ensembl protein_coding_gene 10148 11287 . + . ID=Physo140012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810001;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 10148 11287 . + . ID=Physo140012;Parent=Physo140012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 10148 11287 . + 0 ID=Physo140012;Parent=Physo140012;rank=1 scaffold_81 . exon 10148 11287 . + . ID=Physo140012.1;Parent=Physo140012;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 14531 18106 . + . ID=Physo140014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810003;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 14531 18106 . + . ID=Physo140014;Parent=Physo140014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 14531 17853 . + 0 ID=Physo140014;Parent=Physo140014;rank=1 scaffold_81 . exon 14531 17853 . + . ID=Physo140014.1;Parent=Physo140014;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 . CDS 18079 18106 . + 0 ID=Physo140014;Parent=Physo140014;rank=2 scaffold_81 . exon 18079 18106 . + . ID=Physo140014.2;Parent=Physo140014;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 ensembl protein_coding_gene 22113 29894 . + . ID=Physo109256;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810003;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 22113 29894 . + . ID=Physo109256;Parent=Physo109256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 22113 22480 . + 0 ID=Physo109256;Parent=Physo109256;rank=1 scaffold_81 . exon 22113 22480 . + . ID=Physo109256.1;Parent=Physo109256;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 . CDS 22649 24766 . + 0 ID=Physo109256;Parent=Physo109256;rank=2 scaffold_81 . exon 22649 24766 . + . ID=Physo109256.2;Parent=Physo109256;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_81 . CDS 24846 27478 . + 0 ID=Physo109256;Parent=Physo109256;rank=3 scaffold_81 . exon 24846 27478 . + . ID=Physo109256.3;Parent=Physo109256;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 27558 29791 . + 0 ID=Physo109256;Parent=Physo109256;rank=4 scaffold_81 . exon 27558 29894 . + . ID=Physo109256.4;Parent=Physo109256;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_81 ensembl protein_coding_gene 19898 21561 . - . ID=Physo140016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810005;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 19898 21561 . - . ID=Physo140016;Parent=Physo140016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 19898 20008 . - . ID=Physo140016.5;Parent=Physo140016;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_81 . CDS 19913 20008 . - 0 ID=Physo140016;Parent=Physo140016;rank=5 scaffold_81 . CDS 20094 20356 . - 0 ID=Physo140016;Parent=Physo140016;rank=4 scaffold_81 . exon 20094 20356 . - . ID=Physo140016.4;Parent=Physo140016;constitutive=1;ensembl_phase=1;rank=4 scaffold_81 . CDS 20445 20602 . - 0 ID=Physo140016;Parent=Physo140016;rank=3 scaffold_81 . exon 20445 20602 . - . ID=Physo140016.3;Parent=Physo140016;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 20699 20887 . - 0 ID=Physo140016;Parent=Physo140016;rank=2 scaffold_81 . exon 20699 20887 . - . ID=Physo140016.2;Parent=Physo140016;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_81 . CDS 20935 21521 . - 0 ID=Physo140016;Parent=Physo140016;rank=1 scaffold_81 . exon 20935 21561 . - . ID=Physo140016.1;Parent=Physo140016;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_81 . repeat_region 30111 30160 . ? . description=dust scaffold_81 . biological_region 30218 30218 0.999 - . logic_name=eponine scaffold_81 . biological_region 30693 30694 0.999 + . logic_name=eponine scaffold_81 . biological_region 30813 30813 0.999 - . logic_name=eponine scaffold_81 . biological_region 33417 33425 0.999 + . logic_name=eponine scaffold_81 . repeat_region 34169 34211 . ? . description=trf scaffold_81 . repeat_region 34246 34277 . ? . description=trf scaffold_81 . biological_region 34865 34867 0.999 - . logic_name=eponine scaffold_81 . repeat_region 35283 35303 . ? . description=trf scaffold_81 . biological_region 35353 35354 0.999 + . logic_name=eponine scaffold_81 . biological_region 35715 35716 0.999 - . logic_name=eponine scaffold_81 . biological_region 35852 35856 0.999 - . logic_name=eponine scaffold_81 . biological_region 35989 35992 0.999 - . logic_name=eponine scaffold_81 . biological_region 39559 39561 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 30361 32739 . + . ID=Physo140018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810007;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 30361 32739 . + . ID=Physo140018;Parent=Physo140018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 30361 30428 . + 0 ID=Physo140018;Parent=Physo140018;rank=1 scaffold_81 . exon 30361 30428 . + . ID=Physo140018.1;Parent=Physo140018;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 . CDS 30512 31478 . + 0 ID=Physo140018;Parent=Physo140018;rank=2 scaffold_81 . exon 30512 31478 . + . ID=Physo140018.2;Parent=Physo140018;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 31591 32448 . + 0 ID=Physo140018;Parent=Physo140018;rank=3 scaffold_81 . exon 31591 32448 . + . ID=Physo140018.3;Parent=Physo140018;constitutive=1;rank=3 scaffold_81 . CDS 32527 32739 . + 0 ID=Physo140018;Parent=Physo140018;rank=4 scaffold_81 . exon 32527 32739 . + . ID=Physo140018.4;Parent=Physo140018;constitutive=1;rank=4 scaffold_81 ensembl protein_coding_gene 33401 35101 . - . ID=Physo140019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810008;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 33401 35101 . - . ID=Physo140019;Parent=Physo140019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 33401 35101 . - 0 ID=Physo140019;Parent=Physo140019;rank=1 scaffold_81 . exon 33401 35101 . - . ID=Physo140019.1;Parent=Physo140019;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 35297 35965 . - . ID=Physo140020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810009;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 35297 35965 . - . ID=Physo140020;Parent=Physo140020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 35297 35965 . - 0 ID=Physo140020;Parent=Physo140020;rank=1 scaffold_81 . exon 35297 35965 . - . ID=Physo140020.1;Parent=Physo140020;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 36497 39739 . + . ID=Physo140021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810010;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 36497 39739 . + . ID=Physo140021;Parent=Physo140021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 36497 39739 . + 0 ID=Physo140021;Parent=Physo140021;rank=1 scaffold_81 . exon 36497 39739 . + . ID=Physo140021.1;Parent=Physo140021;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 39967 40984 . - . ID=Physo140022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810011;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 39967 40984 . - . ID=Physo140022;Parent=Physo140022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 39967 40944 . - 0 ID=Physo140022;Parent=Physo140022;rank=1 scaffold_81 . exon 39967 40984 . - . ID=Physo140022.1;Parent=Physo140022;constitutive=1;ensembl_phase=-1;rank=1 scaffold_81 ensembl protein_coding_gene 41273 42405 . - . ID=Physo140023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810012;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 41273 42405 . - . ID=Physo140023;Parent=Physo140023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 41273 41881 . - 0 ID=Physo140023;Parent=Physo140023;rank=4 scaffold_81 . exon 41273 41881 . - . ID=Physo140023.4;Parent=Physo140023;constitutive=1;rank=4 scaffold_81 . CDS 41955 42098 . - 0 ID=Physo140023;Parent=Physo140023;rank=3 scaffold_81 . exon 41955 42098 . - . ID=Physo140023.3;Parent=Physo140023;constitutive=1;rank=3 scaffold_81 . CDS 42171 42235 . - 0 ID=Physo140023;Parent=Physo140023;rank=2 scaffold_81 . exon 42171 42235 . - . ID=Physo140023.2;Parent=Physo140023;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 42312 42405 . - 0 ID=Physo140023;Parent=Physo140023;rank=1 scaffold_81 . exon 42312 42405 . - . ID=Physo140023.1;Parent=Physo140023;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 ensembl protein_coding_gene 42582 52334 . - . ID=Physo140024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810013;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 42582 52334 . - . ID=Physo140024;Parent=Physo140024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 42582 52334 . - 0 ID=Physo140024;Parent=Physo140024;rank=1 scaffold_81 . exon 42582 52334 . - . ID=Physo140024.1;Parent=Physo140024;constitutive=1;rank=1 scaffold_81 . biological_region 49949 49953 0.999 + . logic_name=eponine scaffold_81 . biological_region 49957 49962 0.999 - . logic_name=eponine scaffold_81 . biological_region 49978 49982 0.999 + . logic_name=eponine scaffold_81 . biological_region 50019 50024 0.999 - . logic_name=eponine scaffold_81 . biological_region 50080 50082 0.999 - . logic_name=eponine scaffold_81 . biological_region 50343 50344 0.999 - . logic_name=eponine scaffold_81 . biological_region 50505 50507 0.999 - . logic_name=eponine scaffold_81 . biological_region 50633 50636 0.999 - . logic_name=eponine scaffold_81 . biological_region 50698 50704 0.999 - . logic_name=eponine scaffold_81 . biological_region 50781 50785 0.999 - . logic_name=eponine scaffold_81 . biological_region 50836 50844 0.999 + . logic_name=eponine scaffold_81 . biological_region 50874 50875 0.999 - . logic_name=eponine scaffold_81 . biological_region 51839 51843 0.999 + . logic_name=eponine scaffold_81 . biological_region 51847 51852 0.999 - . logic_name=eponine scaffold_81 . biological_region 51868 51872 0.999 + . logic_name=eponine scaffold_81 . biological_region 51909 51914 0.999 - . logic_name=eponine scaffold_81 . biological_region 51970 51972 0.999 - . logic_name=eponine scaffold_81 . biological_region 52233 52234 0.999 - . logic_name=eponine scaffold_81 . repeat_region 52349 58652 . ? . description=dust scaffold_81 ensembl protein_coding_gene 58823 63571 . - . ID=Physo140025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810014;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 58823 63571 . - . ID=Physo140025;Parent=Physo140025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 58823 58840 . - 0 ID=Physo140025;Parent=Physo140025;rank=9 scaffold_81 . exon 58823 58840 . - . ID=Physo140025.9;Parent=Physo140025;constitutive=1;rank=9 scaffold_81 . CDS 58878 60295 . - 0 ID=Physo140025;Parent=Physo140025;rank=8 scaffold_81 . exon 58878 60295 . - . ID=Physo140025.8;Parent=Physo140025;constitutive=1;ensembl_phase=1;rank=8 scaffold_81 . CDS 60432 61637 . - 0 ID=Physo140025;Parent=Physo140025;rank=7 scaffold_81 . CDS 61932 62021 . - 0 ID=Physo140025;Parent=Physo140025;rank=6 scaffold_81 . CDS 62132 62189 . - 0 ID=Physo140025;Parent=Physo140025;rank=5 scaffold_81 . CDS 62523 62561 . - 0 ID=Physo140025;Parent=Physo140025;rank=4 scaffold_81 . CDS 62680 63067 . - 0 ID=Physo140025;Parent=Physo140025;rank=3 scaffold_81 . CDS 63140 63299 . - 0 ID=Physo140025;Parent=Physo140025;rank=2 scaffold_81 . CDS 63367 63571 . - 0 ID=Physo140025;Parent=Physo140025;rank=1 scaffold_81 . repeat_region 63605 63661 . ? . description=trf scaffold_81 . repeat_region 65360 65414 . ? . description=trf scaffold_81 . exon 60432 61637 . - . ID=Physo140025.7;Parent=Physo140025;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_81 . exon 61932 62021 . - . ID=Physo140025.6;Parent=Physo140025;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_81 . exon 62132 62189 . - . ID=Physo140025.5;Parent=Physo140025;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_81 . exon 62523 62561 . - . ID=Physo140025.4;Parent=Physo140025;constitutive=1;rank=4 scaffold_81 . exon 62680 63067 . - . ID=Physo140025.3;Parent=Physo140025;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . exon 63140 63299 . - . ID=Physo140025.2;Parent=Physo140025;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_81 . exon 63367 63571 . - . ID=Physo140025.1;Parent=Physo140025;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 ensembl protein_coding_gene 67107 67967 . - . ID=Physo140026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810015;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 67107 67967 . - . ID=Physo140026;Parent=Physo140026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 67107 67967 . - 0 ID=Physo140026;Parent=Physo140026;rank=1 scaffold_81 . exon 67107 67967 . - . ID=Physo140026.1;Parent=Physo140026;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 68601 70179 . + . ID=Physo140027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810016;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 68601 70179 . + . ID=Physo140027;Parent=Physo140027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 68601 70179 . + . ID=Physo140027.1;Parent=Physo140027;constitutive=1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 68638 70179 . + 0 ID=Physo140027;Parent=Physo140027;rank=1 scaffold_81 . biological_region 75107 75110 0.999 - . logic_name=eponine scaffold_81 . biological_region 75219 75222 0.999 + . logic_name=eponine scaffold_81 . biological_region 75309 75311 0.999 - . logic_name=eponine scaffold_81 . biological_region 75328 75331 0.999 - . logic_name=eponine scaffold_81 . biological_region 75349 75351 0.999 - . logic_name=eponine scaffold_81 . biological_region 76190 76193 0.999 + . logic_name=eponine scaffold_81 . repeat_region 76463 76528 . ? . description=dust scaffold_81 . repeat_region 76463 76653 . + . description=(CAG)n scaffold_81 . repeat_region 76597 76655 . ? . description=dust scaffold_81 . biological_region 76939 76942 0.999 + . logic_name=eponine scaffold_81 . biological_region 76997 77003 0.999 - . logic_name=eponine scaffold_81 . biological_region 78910 78915 0.999 + . logic_name=eponine scaffold_81 ensembl protein_coding_gene 79452 80859 . - . ID=Physo109257;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810004;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 79452 80859 . - . ID=Physo109257;Parent=Physo109257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 79452 79859 . - . ID=Physo109257.5;Parent=Physo109257;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_81 . CDS 79666 79859 . - 0 ID=Physo109257;Parent=Physo109257;rank=5 scaffold_81 . CDS 79940 80292 . - 0 ID=Physo109257;Parent=Physo109257;rank=4 scaffold_81 . CDS 80370 80441 . - 0 ID=Physo109257;Parent=Physo109257;rank=3 scaffold_81 . CDS 80524 80609 . - 0 ID=Physo109257;Parent=Physo109257;rank=2 scaffold_81 . CDS 80711 80821 . - 0 ID=Physo109257;Parent=Physo109257;rank=1 scaffold_81 ensembl protein_coding_gene 70485 72051 . + . ID=Physo140028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810017;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 70485 72051 . + . ID=Physo140028;Parent=Physo140028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 70485 70606 . + 0 ID=Physo140028;Parent=Physo140028;rank=1 scaffold_81 . exon 70485 70606 . + . ID=Physo140028.1;Parent=Physo140028;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 . CDS 70688 70782 . + 0 ID=Physo140028;Parent=Physo140028;rank=2 scaffold_81 . exon 70688 70782 . + . ID=Physo140028.2;Parent=Physo140028;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 70889 70961 . + 0 ID=Physo140028;Parent=Physo140028;rank=3 scaffold_81 . exon 70889 70961 . + . ID=Physo140028.3;Parent=Physo140028;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_81 . CDS 71032 71155 . + 0 ID=Physo140028;Parent=Physo140028;rank=4 scaffold_81 . exon 71032 71155 . + . ID=Physo140028.4;Parent=Physo140028;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 . CDS 71236 71564 . + 0 ID=Physo140028;Parent=Physo140028;rank=5 scaffold_81 . exon 71236 71564 . + . ID=Physo140028.5;Parent=Physo140028;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_81 . CDS 71638 71983 . + 0 ID=Physo140028;Parent=Physo140028;rank=6 scaffold_81 . exon 71638 72051 . + . ID=Physo140028.6;Parent=Physo140028;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_81 ensembl protein_coding_gene 75334 78888 . + . ID=Physo140030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810019;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 75334 78888 . + . ID=Physo140030;Parent=Physo140030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 75334 78888 . + 0 ID=Physo140030;Parent=Physo140030;rank=1 scaffold_81 . exon 75334 78888 . + . ID=Physo140030.1;Parent=Physo140030;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 72957 74251 . - . ID=Physo158083;biotype=protein_coding;external_name=C_scaffold_81000003;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 72957 74251 . - . ID=Physo158083;Parent=Physo158083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 72957 72964 . - 0 ID=Physo158083;Parent=Physo158083;rank=3 scaffold_81 . exon 72957 72964 . - . ID=Physo158083.3;Parent=Physo158083;constitutive=1;ensembl_phase=1;rank=3 scaffold_81 . CDS 73048 73434 . - 0 ID=Physo158083;Parent=Physo158083;rank=2 scaffold_81 . exon 73048 73434 . - . ID=Physo158083.2;Parent=Physo158083;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 73630 74251 . - 0 ID=Physo158083;Parent=Physo158083;rank=1 scaffold_81 . exon 73630 74251 . - . ID=Physo158083.1;Parent=Physo158083;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . repeat_region 87974 88010 . ? . description=trf scaffold_81 . exon 79940 80292 . - . ID=Physo109257.4;Parent=Physo109257;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_81 . exon 80370 80441 . - . ID=Physo109257.3;Parent=Physo109257;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_81 . exon 80524 80609 . - . ID=Physo109257.2;Parent=Physo109257;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . exon 80711 80859 . - . ID=Physo109257.1;Parent=Physo109257;constitutive=1;ensembl_phase=-1;rank=1 scaffold_81 ensembl protein_coding_gene 84755 89151 . - . ID=Physo140032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810021;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 84755 89151 . - . ID=Physo140032;Parent=Physo140032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 84755 85889 . - 0 ID=Physo140032;Parent=Physo140032;rank=4 scaffold_81 . exon 84755 85889 . - . ID=Physo140032.4;Parent=Physo140032;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 . CDS 86232 86557 . - 0 ID=Physo140032;Parent=Physo140032;rank=3 scaffold_81 . exon 86232 86557 . - . ID=Physo140032.3;Parent=Physo140032;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_81 . CDS 86644 88032 . - 0 ID=Physo140032;Parent=Physo140032;rank=2 scaffold_81 . exon 86644 88032 . - . ID=Physo140032.2;Parent=Physo140032;constitutive=1;rank=2 scaffold_81 . CDS 88798 89151 . - 0 ID=Physo140032;Parent=Physo140032;rank=1 scaffold_81 . exon 88798 89151 . - . ID=Physo140032.1;Parent=Physo140032;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 83003 83558 . + . ID=Physo158085;biotype=protein_coding;external_name=C_scaffold_81000005;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 83003 83558 . + . ID=Physo158085;Parent=Physo158085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 83003 83041 . + 0 ID=Physo158085;Parent=Physo158085;rank=1 scaffold_81 . exon 83003 83041 . + . ID=Physo158085.1;Parent=Physo158085;constitutive=1;rank=1 scaffold_81 . CDS 83112 83320 . + 0 ID=Physo158085;Parent=Physo158085;rank=2 scaffold_81 . exon 83112 83320 . + . ID=Physo158085.2;Parent=Physo158085;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 83450 83558 . + 0 ID=Physo158085;Parent=Physo158085;rank=3 scaffold_81 . exon 83450 83558 . + . ID=Physo158085.3;Parent=Physo158085;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . repeat_region 92021 92326 . - . description=GypsyPi-1c_LTR scaffold_81 . biological_region 92505 92505 0.999 - . logic_name=eponine scaffold_81 . biological_region 93351 93351 0.999 - . logic_name=eponine scaffold_81 . repeat_region 93843 93920 . - . description=GypsyPi-1c_I-int scaffold_81 . biological_region 94546 94548 0.999 - . logic_name=eponine scaffold_81 . repeat_region 94773 96996 . - . description=GypsyPi-1c_I-int scaffold_81 . repeat_region 96997 97301 . - . description=GypsyPi-1c_LTR scaffold_81 ensembl protein_coding_gene 95944 96909 . - . ID=Physo140033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810022;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 95944 96909 . - . ID=Physo140033;Parent=Physo140033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 95944 96909 . - 0 ID=Physo140033;Parent=Physo140033;rank=1 scaffold_81 . exon 95944 96909 . - . ID=Physo140033.1;Parent=Physo140033;constitutive=1;rank=1 scaffold_81 . repeat_region 102360 102385 . ? . description=trf scaffold_81 . repeat_region 107956 108044 . ? . description=dust scaffold_81 ensembl protein_coding_gene 107894 108629 . + . ID=Physo109258;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810005;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 107894 108629 . + . ID=Physo109258;Parent=Physo109258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 107894 108629 . + . ID=Physo109258.1;Parent=Physo109258;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 107929 108378 . + 0 ID=Physo109258;Parent=Physo109258;rank=1 scaffold_81 ensembl protein_coding_gene 100036 100680 . + . ID=Physo140034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810023;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 100036 100680 . + . ID=Physo140034;Parent=Physo140034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 100036 100680 . + 0 ID=Physo140034;Parent=Physo140034;rank=1 scaffold_81 . exon 100036 100680 . + . ID=Physo140034.1;Parent=Physo140034;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 101111 102082 . + . ID=Physo140035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810024;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 101111 102082 . + . ID=Physo140035;Parent=Physo140035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 101111 102082 . + 0 ID=Physo140035;Parent=Physo140035;rank=1 scaffold_81 . exon 101111 102082 . + . ID=Physo140035.1;Parent=Physo140035;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 107007 107630 . + . ID=Physo140036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810025;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 107007 107630 . + . ID=Physo140036;Parent=Physo140036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 107007 107132 . + 0 ID=Physo140036;Parent=Physo140036;rank=1 scaffold_81 . exon 107007 107132 . + . ID=Physo140036.1;Parent=Physo140036;constitutive=1;rank=1 scaffold_81 . CDS 107211 107630 . + 0 ID=Physo140036;Parent=Physo140036;rank=2 scaffold_81 . exon 107211 107630 . + . ID=Physo140036.2;Parent=Physo140036;constitutive=1;rank=2 scaffold_81 . biological_region 109691 109694 0.999 - . logic_name=eponine scaffold_81 . biological_region 111429 111430 0.999 + . logic_name=eponine scaffold_81 . biological_region 112389 112393 0.999 - . logic_name=eponine scaffold_81 . biological_region 112485 112488 0.999 + . logic_name=eponine scaffold_81 . biological_region 114105 114107 0.999 - . logic_name=eponine scaffold_81 . biological_region 115896 115898 0.999 + . logic_name=eponine scaffold_81 . biological_region 116385 116386 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 112019 114827 . + . ID=Physo109259;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810006;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 112019 114827 . + . ID=Physo109259;Parent=Physo109259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 112019 112097 . + . ID=Physo109259.1;Parent=Physo109259;constitutive=1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 112095 112097 . + 0 ID=Physo109259;Parent=Physo109259;rank=1 scaffold_81 . CDS 112254 114827 . + 0 ID=Physo109259;Parent=Physo109259;rank=2 scaffold_81 . exon 112254 114827 . + . ID=Physo109259.2;Parent=Physo109259;constitutive=1;rank=2 scaffold_81 ensembl protein_coding_gene 116280 117973 . + . ID=Physo120743;biotype=protein_coding;external_name=estExt_Genewise1.C_810091;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 116280 117973 . + . ID=Physo120743;Parent=Physo120743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 116280 117973 . + . ID=Physo120743.1;Parent=Physo120743;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 116317 117879 . + 0 ID=Physo120743;Parent=Physo120743;rank=1 scaffold_81 ensembl protein_coding_gene 118482 119265 . + . ID=Physo140040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810029;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 118482 119265 . + . ID=Physo140040;Parent=Physo140040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 118482 118606 . + . ID=Physo140040.1;Parent=Physo140040;constitutive=1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 118532 118606 . + 0 ID=Physo140040;Parent=Physo140040;rank=1 scaffold_81 . CDS 118701 118805 . + 0 ID=Physo140040;Parent=Physo140040;rank=2 scaffold_81 . exon 118701 118805 . + . ID=Physo140040.2;Parent=Physo140040;constitutive=1;rank=2 scaffold_81 . CDS 118916 118972 . + 0 ID=Physo140040;Parent=Physo140040;rank=3 scaffold_81 . exon 118916 118972 . + . ID=Physo140040.3;Parent=Physo140040;constitutive=1;rank=3 scaffold_81 . CDS 119063 119218 . + 0 ID=Physo140040;Parent=Physo140040;rank=4 scaffold_81 . exon 119063 119265 . + . ID=Physo140040.4;Parent=Physo140040;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_81 . repeat_region 123170 123208 . ? . description=dust scaffold_81 . repeat_region 123171 123204 . ? . description=trf scaffold_81 . repeat_region 123171 123204 . ? . description=trf scaffold_81 . repeat_region 123175 123207 . ? . description=trf scaffold_81 ensembl protein_coding_gene 121216 122322 . - . ID=Physo109261;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810008;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 121216 122322 . - . ID=Physo109261;Parent=Physo109261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 121216 121390 . - 0 ID=Physo109261;Parent=Physo109261;rank=2 scaffold_81 . exon 121216 121390 . - . ID=Physo109261.2;Parent=Physo109261;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 121472 122322 . - 0 ID=Physo109261;Parent=Physo109261;rank=1 scaffold_81 . exon 121472 122322 . - . ID=Physo109261.1;Parent=Physo109261;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 ensembl protein_coding_gene 119639 120820 . + . ID=Physo140041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810030;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 119639 120820 . + . ID=Physo140041;Parent=Physo140041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 119639 120157 . + 0 ID=Physo140041;Parent=Physo140041;rank=1 scaffold_81 . exon 119639 120157 . + . ID=Physo140041.1;Parent=Physo140041;constitutive=1;rank=1 scaffold_81 . CDS 120232 120566 . + 0 ID=Physo140041;Parent=Physo140041;rank=2 scaffold_81 . exon 120232 120566 . + . ID=Physo140041.2;Parent=Physo140041;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 120634 120820 . + 0 ID=Physo140041;Parent=Physo140041;rank=3 scaffold_81 . exon 120634 120820 . + . ID=Physo140041.3;Parent=Physo140041;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 ensembl protein_coding_gene 122456 123903 . + . ID=Physo140043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810032;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 122456 123903 . + . ID=Physo140043;Parent=Physo140043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 122456 122593 . + 0 ID=Physo140043;Parent=Physo140043;rank=1 scaffold_81 . exon 122456 122593 . + . ID=Physo140043.1;Parent=Physo140043;constitutive=1;rank=1 scaffold_81 . CDS 122614 122673 . + 0 ID=Physo140043;Parent=Physo140043;rank=2 scaffold_81 . exon 122614 122673 . + . ID=Physo140043.2;Parent=Physo140043;constitutive=1;rank=2 scaffold_81 . CDS 122767 123006 . + 0 ID=Physo140043;Parent=Physo140043;rank=3 scaffold_81 . exon 122767 123006 . + . ID=Physo140043.3;Parent=Physo140043;constitutive=1;rank=3 scaffold_81 . CDS 123212 123310 . + 0 ID=Physo140043;Parent=Physo140043;rank=4 scaffold_81 . exon 123212 123310 . + . ID=Physo140043.4;Parent=Physo140043;constitutive=1;rank=4 scaffold_81 . CDS 123406 123903 . + 0 ID=Physo140043;Parent=Physo140043;rank=5 scaffold_81 . exon 123406 123903 . + . ID=Physo140043.5;Parent=Physo140043;constitutive=1;rank=5 scaffold_81 ensembl protein_coding_gene 124147 127968 . - . ID=Physo140044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810033;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 124147 127968 . - . ID=Physo140044;Parent=Physo140044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 124147 127968 . - 0 ID=Physo140044;Parent=Physo140044;rank=1 scaffold_81 . exon 124147 127968 . - . ID=Physo140044.1;Parent=Physo140044;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 128157 128771 . - . ID=Physo140045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810034;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 128157 128771 . - . ID=Physo140045;Parent=Physo140045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 128157 128771 . - 0 ID=Physo140045;Parent=Physo140045;rank=1 scaffold_81 . exon 128157 128771 . - . ID=Physo140045.1;Parent=Physo140045;constitutive=1;rank=1 scaffold_81 . biological_region 134893 134894 0.999 - . logic_name=eponine scaffold_81 . biological_region 137248 137249 0.999 + . logic_name=eponine scaffold_81 . biological_region 137269 137272 0.999 + . logic_name=eponine scaffold_81 . biological_region 137282 137286 0.999 - . logic_name=eponine scaffold_81 . biological_region 137328 137328 0.999 - . logic_name=eponine scaffold_81 . biological_region 137361 137363 0.999 - . logic_name=eponine scaffold_81 . biological_region 137497 137500 0.999 + . logic_name=eponine scaffold_81 . biological_region 138463 138465 0.999 + . logic_name=eponine scaffold_81 ensembl protein_coding_gene 133125 134894 . - . ID=Physo140046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810035;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 133125 134894 . - . ID=Physo140046;Parent=Physo140046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 133125 134894 . - 0 ID=Physo140046;Parent=Physo140046;rank=1 scaffold_81 . exon 133125 134894 . - . ID=Physo140046.1;Parent=Physo140046;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 136058 139729 . + . ID=Physo140047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810036;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 136058 139729 . + . ID=Physo140047;Parent=Physo140047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 136058 136135 . + 0 ID=Physo140047;Parent=Physo140047;rank=1 scaffold_81 . exon 136058 136135 . + . ID=Physo140047.1;Parent=Physo140047;constitutive=1;rank=1 scaffold_81 . CDS 136215 136283 . + 0 ID=Physo140047;Parent=Physo140047;rank=2 scaffold_81 . exon 136215 136283 . + . ID=Physo140047.2;Parent=Physo140047;constitutive=1;rank=2 scaffold_81 . CDS 136351 136431 . + 0 ID=Physo140047;Parent=Physo140047;rank=3 scaffold_81 . exon 136351 136431 . + . ID=Physo140047.3;Parent=Physo140047;constitutive=1;rank=3 scaffold_81 . CDS 136500 136683 . + 0 ID=Physo140047;Parent=Physo140047;rank=4 scaffold_81 . exon 136500 136683 . + . ID=Physo140047.4;Parent=Physo140047;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_81 . CDS 136748 136770 . + 0 ID=Physo140047;Parent=Physo140047;rank=5 scaffold_81 . exon 136748 136770 . + . ID=Physo140047.5;Parent=Physo140047;constitutive=1;ensembl_phase=1;rank=5 scaffold_81 . CDS 136849 136925 . + 0 ID=Physo140047;Parent=Physo140047;rank=6 scaffold_81 . exon 136849 136925 . + . ID=Physo140047.6;Parent=Physo140047;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_81 . CDS 136967 136974 . + 0 ID=Physo140047;Parent=Physo140047;rank=7 scaffold_81 . exon 136967 136974 . + . ID=Physo140047.7;Parent=Physo140047;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_81 . CDS 137070 137115 . + 0 ID=Physo140047;Parent=Physo140047;rank=8 scaffold_81 . exon 137070 137115 . + . ID=Physo140047.8;Parent=Physo140047;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_81 . CDS 137171 139658 . + 0 ID=Physo140047;Parent=Physo140047;rank=9 scaffold_81 . exon 137171 139729 . + . ID=Physo140047.9;Parent=Physo140047;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=9 scaffold_81 . repeat_region 144473 144515 . ? . description=trf scaffold_81 . repeat_region 147539 147588 . ? . description=dust scaffold_81 . repeat_region 149147 149200 . ? . description=dust scaffold_81 . repeat_region 149201 149304 . ? . description=dust scaffold_81 ensembl protein_coding_gene 143067 144330 . - . ID=Physo109262;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810009;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 143067 144330 . - . ID=Physo109262;Parent=Physo109262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 143067 143371 . - . ID=Physo109262.4;Parent=Physo109262;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_81 . CDS 143306 143371 . - 0 ID=Physo109262;Parent=Physo109262;rank=4 scaffold_81 . CDS 143449 143600 . - 0 ID=Physo109262;Parent=Physo109262;rank=3 scaffold_81 . exon 143449 143600 . - . ID=Physo109262.3;Parent=Physo109262;constitutive=1;ensembl_phase=1;rank=3 scaffold_81 . CDS 143675 143804 . - 0 ID=Physo109262;Parent=Physo109262;rank=2 scaffold_81 . exon 143675 143804 . - . ID=Physo109262.2;Parent=Physo109262;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_81 . CDS 143910 144323 . - 0 ID=Physo109262;Parent=Physo109262;rank=1 scaffold_81 . exon 143910 144330 . - . ID=Physo109262.1;Parent=Physo109262;constitutive=1;ensembl_phase=-1;rank=1 scaffold_81 ensembl protein_coding_gene 144564 145736 . + . ID=Physo120767;biotype=protein_coding;external_name=estExt_Genewise1.C_810115;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 144564 145736 . + . ID=Physo120767;Parent=Physo120767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 144564 144763 . + 0 ID=Physo120767;Parent=Physo120767;rank=1 scaffold_81 . exon 144564 144763 . + . ID=Physo120767.1;Parent=Physo120767;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 . CDS 144833 144866 . + 0 ID=Physo120767;Parent=Physo120767;rank=2 scaffold_81 . exon 144833 144866 . + . ID=Physo120767.2;Parent=Physo120767;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 144946 145005 . + 0 ID=Physo120767;Parent=Physo120767;rank=3 scaffold_81 . exon 144946 145005 . + . ID=Physo120767.3;Parent=Physo120767;constitutive=1;rank=3 scaffold_81 . CDS 145074 145132 . + 0 ID=Physo120767;Parent=Physo120767;rank=4 scaffold_81 . exon 145074 145132 . + . ID=Physo120767.4;Parent=Physo120767;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_81 . CDS 145219 145382 . + 0 ID=Physo120767;Parent=Physo120767;rank=5 scaffold_81 . exon 145219 145382 . + . ID=Physo120767.5;Parent=Physo120767;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_81 . CDS 145451 145574 . + 0 ID=Physo120767;Parent=Physo120767;rank=6 scaffold_81 . exon 145451 145574 . + . ID=Physo120767.6;Parent=Physo120767;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_81 . CDS 145676 145736 . + 0 ID=Physo120767;Parent=Physo120767;rank=7 scaffold_81 . exon 145676 145736 . + . ID=Physo120767.7;Parent=Physo120767;constitutive=1;ensembl_phase=2;rank=7 scaffold_81 ensembl protein_coding_gene 139867 141929 . - . ID=Physo140048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810037;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 139867 141929 . - . ID=Physo140048;Parent=Physo140048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 139867 140358 . - 0 ID=Physo140048;Parent=Physo140048;rank=5 scaffold_81 . exon 139867 140358 . - . ID=Physo140048.5;Parent=Physo140048;constitutive=1;rank=5 scaffold_81 . CDS 140428 140653 . - 0 ID=Physo140048;Parent=Physo140048;rank=4 scaffold_81 . exon 140428 140653 . - . ID=Physo140048.4;Parent=Physo140048;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 . CDS 140722 141416 . - 0 ID=Physo140048;Parent=Physo140048;rank=3 scaffold_81 . exon 140722 141416 . - . ID=Physo140048.3;Parent=Physo140048;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_81 . CDS 141492 141706 . - 0 ID=Physo140048;Parent=Physo140048;rank=2 scaffold_81 . exon 141492 141706 . - . ID=Physo140048.2;Parent=Physo140048;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 141830 141929 . - 0 ID=Physo140048;Parent=Physo140048;rank=1 scaffold_81 . exon 141830 141929 . - . ID=Physo140048.1;Parent=Physo140048;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 ensembl protein_coding_gene 142115 142891 . - . ID=Physo140049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810038;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 142115 142891 . - . ID=Physo140049;Parent=Physo140049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 142115 142270 . - 0 ID=Physo140049;Parent=Physo140049;rank=2 scaffold_81 . exon 142115 142270 . - . ID=Physo140049.2;Parent=Physo140049;constitutive=1;rank=2 scaffold_81 . CDS 142337 142891 . - 0 ID=Physo140049;Parent=Physo140049;rank=1 scaffold_81 . exon 142337 142891 . - . ID=Physo140049.1;Parent=Physo140049;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 146491 148175 . + . ID=Physo140052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810041;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 146491 148175 . + . ID=Physo140052;Parent=Physo140052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 146491 147304 . + 0 ID=Physo140052;Parent=Physo140052;rank=1 scaffold_81 . exon 146491 147304 . + . ID=Physo140052.1;Parent=Physo140052;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 147626 147803 . + 0 ID=Physo140052;Parent=Physo140052;rank=2 scaffold_81 . exon 147626 147803 . + . ID=Physo140052.2;Parent=Physo140052;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_81 . CDS 147899 148175 . + 0 ID=Physo140052;Parent=Physo140052;rank=3 scaffold_81 . exon 147899 148175 . + . ID=Physo140052.3;Parent=Physo140052;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 ensembl protein_coding_gene 148287 151050 . - . ID=Physo140053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810042;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 148287 151050 . - . ID=Physo140053;Parent=Physo140053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 148287 149088 . - . ID=Physo140053.2;Parent=Physo140053;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_81 . CDS 148327 149088 . - 0 ID=Physo140053;Parent=Physo140053;rank=2 scaffold_81 . CDS 149335 151050 . - 0 ID=Physo140053;Parent=Physo140053;rank=1 scaffold_81 . biological_region 150730 150730 0.999 + . logic_name=eponine scaffold_81 . biological_region 151591 151594 0.999 + . logic_name=eponine scaffold_81 . biological_region 151655 151656 0.999 + . logic_name=eponine scaffold_81 . biological_region 151825 151827 0.999 - . logic_name=eponine scaffold_81 . biological_region 151898 151901 0.999 - . logic_name=eponine scaffold_81 . biological_region 152385 152387 0.999 + . logic_name=eponine scaffold_81 . biological_region 156648 156650 0.999 - . logic_name=eponine scaffold_81 . exon 149335 151050 . - . ID=Physo140053.1;Parent=Physo140053;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 152591 153756 . + . ID=Physo140054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810043;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 152591 153756 . + . ID=Physo140054;Parent=Physo140054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 152591 152652 . + 0 ID=Physo140054;Parent=Physo140054;rank=1 scaffold_81 . exon 152591 152652 . + . ID=Physo140054.1;Parent=Physo140054;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 . CDS 152713 152863 . + 0 ID=Physo140054;Parent=Physo140054;rank=2 scaffold_81 . exon 152713 152863 . + . ID=Physo140054.2;Parent=Physo140054;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 152901 153149 . + 0 ID=Physo140054;Parent=Physo140054;rank=3 scaffold_81 . exon 152901 153149 . + . ID=Physo140054.3;Parent=Physo140054;constitutive=1;rank=3 scaffold_81 . CDS 153210 153323 . + 0 ID=Physo140054;Parent=Physo140054;rank=4 scaffold_81 . exon 153210 153323 . + . ID=Physo140054.4;Parent=Physo140054;constitutive=1;rank=4 scaffold_81 . CDS 153363 153602 . + 0 ID=Physo140054;Parent=Physo140054;rank=5 scaffold_81 . exon 153363 153602 . + . ID=Physo140054.5;Parent=Physo140054;constitutive=1;rank=5 scaffold_81 . CDS 153625 153756 . + 0 ID=Physo140054;Parent=Physo140054;rank=6 scaffold_81 . exon 153625 153756 . + . ID=Physo140054.6;Parent=Physo140054;constitutive=1;rank=6 scaffold_81 ensembl protein_coding_gene 154512 156250 . - . ID=Physo140055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810044;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 154512 156250 . - . ID=Physo140055;Parent=Physo140055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 154512 155566 . - 0 ID=Physo140055;Parent=Physo140055;rank=2 scaffold_81 . exon 154512 155566 . - . ID=Physo140055.2;Parent=Physo140055;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 155605 156250 . - 0 ID=Physo140055;Parent=Physo140055;rank=1 scaffold_81 . exon 155605 156250 . - . ID=Physo140055.1;Parent=Physo140055;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . repeat_region 159293 159516 . ? . description=trf scaffold_81 . repeat_region 159594 159627 . ? . description=trf scaffold_81 . repeat_region 162131 162139 . ? . description=dust scaffold_81 . repeat_region 163040 163089 . ? . description=dust scaffold_81 . repeat_region 164754 164803 . ? . description=dust scaffold_81 ensembl protein_coding_gene 163132 164026 . + . ID=Physo140056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810045;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 163132 164026 . + . ID=Physo140056;Parent=Physo140056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 163132 163419 . + 0 ID=Physo140056;Parent=Physo140056;rank=1 scaffold_81 . exon 163132 163419 . + . ID=Physo140056.1;Parent=Physo140056;constitutive=1;rank=1 scaffold_81 . CDS 163480 163593 . + 0 ID=Physo140056;Parent=Physo140056;rank=2 scaffold_81 . exon 163480 163593 . + . ID=Physo140056.2;Parent=Physo140056;constitutive=1;rank=2 scaffold_81 . CDS 163633 163872 . + 0 ID=Physo140056;Parent=Physo140056;rank=3 scaffold_81 . exon 163633 163872 . + . ID=Physo140056.3;Parent=Physo140056;constitutive=1;rank=3 scaffold_81 . CDS 163895 164026 . + 0 ID=Physo140056;Parent=Physo140056;rank=4 scaffold_81 . exon 163895 164026 . + . ID=Physo140056.4;Parent=Physo140056;constitutive=1;rank=4 scaffold_81 ensembl protein_coding_gene 164648 174683 . - . ID=Physo140057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810046;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 164648 174683 . - . ID=Physo140057;Parent=Physo140057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 164648 164665 . - 0 ID=Physo140057;Parent=Physo140057;rank=2 scaffold_81 . exon 164648 164665 . - . ID=Physo140057.2;Parent=Physo140057;constitutive=1;rank=2 scaffold_81 . CDS 164814 174683 . - 0 ID=Physo140057;Parent=Physo140057;rank=1 scaffold_81 . exon 164814 174683 . - . ID=Physo140057.1;Parent=Physo140057;constitutive=1;rank=1 scaffold_81 . biological_region 170190 170190 0.999 + . logic_name=eponine scaffold_81 . biological_region 172043 172051 0.999 - . logic_name=eponine scaffold_81 . biological_region 172102 172104 0.999 + . logic_name=eponine scaffold_81 . biological_region 172361 172362 0.999 + . logic_name=eponine scaffold_81 . biological_region 173149 173149 0.999 + . logic_name=eponine scaffold_81 . biological_region 173259 173263 0.999 + . logic_name=eponine scaffold_81 . biological_region 173919 173924 0.999 - . logic_name=eponine scaffold_81 . biological_region 174386 174393 0.999 - . logic_name=eponine scaffold_81 . biological_region 174862 174865 0.999 + . logic_name=eponine scaffold_81 . biological_region 174926 174927 0.999 + . logic_name=eponine scaffold_81 . biological_region 175096 175098 0.999 - . logic_name=eponine scaffold_81 . biological_region 175169 175172 0.999 - . logic_name=eponine scaffold_81 . biological_region 175656 175658 0.999 + . logic_name=eponine scaffold_81 . biological_region 178550 178553 0.999 + . logic_name=eponine scaffold_81 . repeat_region 183211 183357 . ? . description=trf scaffold_81 . repeat_region 184712 184747 . ? . description=dust scaffold_81 . repeat_region 184723 184747 . ? . description=trf scaffold_81 ensembl protein_coding_gene 185827 188111 . + . ID=Physo140058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810047;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 185827 188111 . + . ID=Physo140058;Parent=Physo140058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 185827 187446 . + 0 ID=Physo140058;Parent=Physo140058;rank=1 scaffold_81 . exon 185827 187446 . + . ID=Physo140058.1;Parent=Physo140058;constitutive=1;rank=1 scaffold_81 . CDS 187692 188111 . + 0 ID=Physo140058;Parent=Physo140058;rank=2 scaffold_81 . exon 187692 188111 . + . ID=Physo140058.2;Parent=Physo140058;constitutive=1;rank=2 scaffold_81 ensembl protein_coding_gene 188282 191047 . - . ID=Physo140059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810048;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 188282 191047 . - . ID=Physo140059;Parent=Physo140059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 188282 188968 . - 0 ID=Physo140059;Parent=Physo140059;rank=4 scaffold_81 . exon 188282 188968 . - . ID=Physo140059.4;Parent=Physo140059;constitutive=1;rank=4 scaffold_81 . CDS 189113 189212 . - 0 ID=Physo140059;Parent=Physo140059;rank=3 scaffold_81 . CDS 189294 189376 . - 0 ID=Physo140059;Parent=Physo140059;rank=2 scaffold_81 . CDS 189491 191047 . - 0 ID=Physo140059;Parent=Physo140059;rank=1 scaffold_81 . biological_region 190688 190692 0.999 + . logic_name=eponine scaffold_81 . biological_region 190816 190820 0.999 - . logic_name=eponine scaffold_81 . biological_region 190900 190903 0.999 - . logic_name=eponine scaffold_81 . biological_region 190910 190913 0.999 + . logic_name=eponine scaffold_81 . biological_region 191081 191084 0.999 - . logic_name=eponine scaffold_81 . biological_region 191302 191304 0.999 + . logic_name=eponine scaffold_81 . biological_region 191978 191979 0.999 - . logic_name=eponine scaffold_81 . biological_region 192783 192789 0.999 + . logic_name=eponine scaffold_81 . biological_region 194526 194528 0.999 + . logic_name=eponine scaffold_81 . exon 189113 189212 . - . ID=Physo140059.3;Parent=Physo140059;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . exon 189294 189376 . - . ID=Physo140059.2;Parent=Physo140059;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . exon 189491 191047 . - . ID=Physo140059.1;Parent=Physo140059;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 192822 194984 . + . ID=Physo140060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810049;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 192822 194984 . + . ID=Physo140060;Parent=Physo140060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 192822 194984 . + 0 ID=Physo140060;Parent=Physo140060;rank=1 scaffold_81 . exon 192822 194984 . + . ID=Physo140060.1;Parent=Physo140060;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 198094 201336 . + . ID=Physo140061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810050;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 198094 201336 . + . ID=Physo140061;Parent=Physo140061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 198094 198880 . + 0 ID=Physo140061;Parent=Physo140061;rank=1 scaffold_81 . exon 198094 198880 . + . ID=Physo140061.1;Parent=Physo140061;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 198943 199630 . + 0 ID=Physo140061;Parent=Physo140061;rank=2 scaffold_81 . CDS 199904 200437 . + 0 ID=Physo140061;Parent=Physo140061;rank=3 scaffold_81 . CDS 200685 201336 . + 0 ID=Physo140061;Parent=Physo140061;rank=4 scaffold_81 . repeat_region 202667 202687 . ? . description=trf scaffold_81 . repeat_region 204131 204142 . ? . description=dust scaffold_81 . repeat_region 205273 205280 . ? . description=dust scaffold_81 . exon 198943 199630 . + . ID=Physo140061.2;Parent=Physo140061;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_81 . exon 199904 200437 . + . ID=Physo140061.3;Parent=Physo140061;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_81 . exon 200685 201336 . + . ID=Physo140061.4;Parent=Physo140061;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 ensembl protein_coding_gene 208961 209500 . - . ID=Physo140062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810051;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 208961 209500 . - . ID=Physo140062;Parent=Physo140062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 208961 209500 . - 0 ID=Physo140062;Parent=Physo140062;rank=1 scaffold_81 . exon 208961 209500 . - . ID=Physo140062.1;Parent=Physo140062;constitutive=1;rank=1 scaffold_81 . repeat_region 223622 223629 . ? . description=dust scaffold_81 . repeat_region 223946 223953 . ? . description=dust scaffold_81 . repeat_region 224203 224246 . ? . description=trf scaffold_81 . biological_region 224915 224916 0.999 - . logic_name=eponine scaffold_81 . biological_region 224972 224972 0.999 + . logic_name=eponine scaffold_81 . repeat_region 225106 225152 . ? . description=trf scaffold_81 ensembl protein_coding_gene 224262 224805 . - . ID=Physo140063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810052;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 224262 224805 . - . ID=Physo140063;Parent=Physo140063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 224262 224449 . - 0 ID=Physo140063;Parent=Physo140063;rank=2 scaffold_81 . exon 224262 224449 . - . ID=Physo140063.2;Parent=Physo140063;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 224619 224805 . - 0 ID=Physo140063;Parent=Physo140063;rank=1 scaffold_81 . exon 224619 224805 . - . ID=Physo140063.1;Parent=Physo140063;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 ensembl protein_coding_gene 225409 226894 . + . ID=Physo140064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810053;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 225409 226894 . + . ID=Physo140064;Parent=Physo140064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 225409 225499 . + 0 ID=Physo140064;Parent=Physo140064;rank=1 scaffold_81 . exon 225409 225499 . + . ID=Physo140064.1;Parent=Physo140064;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 225600 225791 . + 0 ID=Physo140064;Parent=Physo140064;rank=2 scaffold_81 . exon 225600 225791 . + . ID=Physo140064.2;Parent=Physo140064;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 225841 225902 . + 0 ID=Physo140064;Parent=Physo140064;rank=3 scaffold_81 . exon 225841 225902 . + . ID=Physo140064.3;Parent=Physo140064;constitutive=1;ensembl_phase=1;rank=3 scaffold_81 . CDS 225948 225959 . + 0 ID=Physo140064;Parent=Physo140064;rank=4 scaffold_81 . exon 225948 225959 . + . ID=Physo140064.4;Parent=Physo140064;constitutive=1;rank=4 scaffold_81 . CDS 225987 226062 . + 0 ID=Physo140064;Parent=Physo140064;rank=5 scaffold_81 . exon 225987 226062 . + . ID=Physo140064.5;Parent=Physo140064;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_81 . CDS 226163 226227 . + 0 ID=Physo140064;Parent=Physo140064;rank=6 scaffold_81 . exon 226163 226227 . + . ID=Physo140064.6;Parent=Physo140064;constitutive=1;ensembl_phase=1;rank=6 scaffold_81 . CDS 226314 226341 . + 0 ID=Physo140064;Parent=Physo140064;rank=7 scaffold_81 . exon 226314 226341 . + . ID=Physo140064.7;Parent=Physo140064;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_81 . CDS 226563 226894 . + 0 ID=Physo140064;Parent=Physo140064;rank=8 scaffold_81 . exon 226563 226894 . + . ID=Physo140064.8;Parent=Physo140064;constitutive=1;ensembl_phase=1;rank=8 scaffold_81 ensembl protein_coding_gene 237703 241332 . + . ID=Physo140065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810054;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 237703 241332 . + . ID=Physo140065;Parent=Physo140065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 237703 241332 . + 0 ID=Physo140065;Parent=Physo140065;rank=1 scaffold_81 . exon 237703 241332 . + . ID=Physo140065.1;Parent=Physo140065;constitutive=1;rank=1 scaffold_81 . biological_region 239159 239159 0.999 - . logic_name=eponine scaffold_81 . biological_region 240258 240261 0.999 - . logic_name=eponine scaffold_81 . biological_region 240313 240320 0.999 - . logic_name=eponine scaffold_81 . biological_region 240983 240987 0.999 - . logic_name=eponine scaffold_81 . biological_region 241009 241011 0.999 + . logic_name=eponine scaffold_81 . biological_region 241208 241209 0.999 - . logic_name=eponine scaffold_81 . biological_region 242183 242183 0.999 + . logic_name=eponine scaffold_81 . biological_region 243830 243834 0.999 + . logic_name=eponine scaffold_81 . biological_region 245439 245442 0.999 - . logic_name=eponine scaffold_81 . biological_region 246325 246327 0.999 - . logic_name=eponine scaffold_81 . biological_region 246466 246468 0.999 - . logic_name=eponine scaffold_81 . biological_region 247388 247390 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 241534 243942 . + . ID=Physo140066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810055;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 241534 243942 . + . ID=Physo140066;Parent=Physo140066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 241534 242375 . + 0 ID=Physo140066;Parent=Physo140066;rank=1 scaffold_81 . exon 241534 242375 . + . ID=Physo140066.1;Parent=Physo140066;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 . CDS 242622 243942 . + 0 ID=Physo140066;Parent=Physo140066;rank=2 scaffold_81 . exon 242622 243942 . + . ID=Physo140066.2;Parent=Physo140066;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 ensembl protein_coding_gene 244499 245929 . + . ID=Physo140067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810056;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 244499 245929 . + . ID=Physo140067;Parent=Physo140067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 244499 245929 . + 0 ID=Physo140067;Parent=Physo140067;rank=1 scaffold_81 . exon 244499 245929 . + . ID=Physo140067.1;Parent=Physo140067;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 246180 249792 . + . ID=Physo140068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810057;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 246180 249792 . + . ID=Physo140068;Parent=Physo140068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 246180 249110 . + 0 ID=Physo140068;Parent=Physo140068;rank=1 scaffold_81 . exon 246180 249110 . + . ID=Physo140068.1;Parent=Physo140068;constitutive=1;rank=1 scaffold_81 . CDS 249185 249501 . + 0 ID=Physo140068;Parent=Physo140068;rank=2 scaffold_81 . CDS 249577 249712 . + 0 ID=Physo140068;Parent=Physo140068;rank=3 scaffold_81 . CDS 249775 249792 . + 0 ID=Physo140068;Parent=Physo140068;rank=4 scaffold_81 . repeat_region 250433 250452 . ? . description=trf scaffold_81 . repeat_region 251500 251548 . ? . description=trf scaffold_81 . repeat_region 258264 258302 . ? . description=trf scaffold_81 . exon 249185 249501 . + . ID=Physo140068.2;Parent=Physo140068;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . exon 249577 249712 . + . ID=Physo140068.3;Parent=Physo140068;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . exon 249775 249792 . + . ID=Physo140068.4;Parent=Physo140068;constitutive=1;rank=4 scaffold_81 ensembl protein_coding_gene 249919 250854 . - . ID=Physo140069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810058;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 249919 250854 . - . ID=Physo140069;Parent=Physo140069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 249919 250159 . - 0 ID=Physo140069;Parent=Physo140069;rank=3 scaffold_81 . exon 249919 250159 . - . ID=Physo140069.3;Parent=Physo140069;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 250229 250320 . - 0 ID=Physo140069;Parent=Physo140069;rank=2 scaffold_81 . exon 250229 250320 . - . ID=Physo140069.2;Parent=Physo140069;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 250387 250854 . - 0 ID=Physo140069;Parent=Physo140069;rank=1 scaffold_81 . exon 250387 250854 . - . ID=Physo140069.1;Parent=Physo140069;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 251090 254384 . + . ID=Physo140070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810059;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 251090 254384 . + . ID=Physo140070;Parent=Physo140070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 251090 252129 . + 0 ID=Physo140070;Parent=Physo140070;rank=1 scaffold_81 . exon 251090 252129 . + . ID=Physo140070.1;Parent=Physo140070;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 . CDS 252190 252217 . + 0 ID=Physo140070;Parent=Physo140070;rank=2 scaffold_81 . exon 252190 252217 . + . ID=Physo140070.2;Parent=Physo140070;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 252298 254178 . + 0 ID=Physo140070;Parent=Physo140070;rank=3 scaffold_81 . exon 252298 254178 . + . ID=Physo140070.3;Parent=Physo140070;constitutive=1;rank=3 scaffold_81 . CDS 254304 254384 . + 0 ID=Physo140070;Parent=Physo140070;rank=4 scaffold_81 . exon 254304 254384 . + . ID=Physo140070.4;Parent=Physo140070;constitutive=1;rank=4 scaffold_81 ensembl protein_coding_gene 254580 256157 . - . ID=Physo140071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810060;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 254580 256157 . - . ID=Physo140071;Parent=Physo140071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 254580 256157 . - 0 ID=Physo140071;Parent=Physo140071;rank=1 scaffold_81 . exon 254580 256157 . - . ID=Physo140071.1;Parent=Physo140071;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 256413 260243 . + . ID=Physo140072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810061;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 256413 260243 . + . ID=Physo140072;Parent=Physo140072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 256413 260243 . + . ID=Physo140072.1;Parent=Physo140072;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 256467 260165 . + 0 ID=Physo140072;Parent=Physo140072;rank=1 scaffold_81 . biological_region 259538 259543 0.999 + . logic_name=eponine scaffold_81 . biological_region 262079 262080 0.999 + . logic_name=eponine scaffold_81 . repeat_region 264621 268560 . ? . description=dust scaffold_81 . repeat_region 268561 284540 . ? . description=dust scaffold_81 ensembl protein_coding_gene 260742 262319 . - . ID=Physo109263;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810010;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 260742 262319 . - . ID=Physo109263;Parent=Physo109263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 260742 262199 . - 0 ID=Physo109263;Parent=Physo109263;rank=2 scaffold_81 . exon 260742 262199 . - . ID=Physo109263.2;Parent=Physo109263;constitutive=1;rank=2 scaffold_81 . CDS 262230 262319 . - 0 ID=Physo109263;Parent=Physo109263;rank=1 scaffold_81 . exon 262230 262319 . - . ID=Physo109263.1;Parent=Physo109263;constitutive=1;rank=1 scaffold_81 . repeat_region 268561 284540 . ? . description=dust scaffold_81 . biological_region 285403 285407 0.999 + . logic_name=eponine scaffold_81 ensembl protein_coding_gene 285301 286579 . + . ID=Physo140074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810063;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 285301 286579 . + . ID=Physo140074;Parent=Physo140074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 285301 286506 . + 0 ID=Physo140074;Parent=Physo140074;rank=1 scaffold_81 . exon 285301 286506 . + . ID=Physo140074.1;Parent=Physo140074;constitutive=1;rank=1 scaffold_81 . CDS 286538 286579 . + 0 ID=Physo140074;Parent=Physo140074;rank=2 scaffold_81 . exon 286538 286579 . + . ID=Physo140074.2;Parent=Physo140074;constitutive=1;rank=2 scaffold_81 ensembl protein_coding_gene 286891 288552 . - . ID=Physo140075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810064;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 286891 288552 . - . ID=Physo140075;Parent=Physo140075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 286891 287022 . - 0 ID=Physo140075;Parent=Physo140075;rank=6 scaffold_81 . exon 286891 287022 . - . ID=Physo140075.6;Parent=Physo140075;constitutive=1;rank=6 scaffold_81 . CDS 287104 287220 . - 0 ID=Physo140075;Parent=Physo140075;rank=5 scaffold_81 . exon 287104 287220 . - . ID=Physo140075.5;Parent=Physo140075;constitutive=1;rank=5 scaffold_81 . CDS 287296 287477 . - 0 ID=Physo140075;Parent=Physo140075;rank=4 scaffold_81 . exon 287296 287477 . - . ID=Physo140075.4;Parent=Physo140075;constitutive=1;ensembl_phase=1;rank=4 scaffold_81 . CDS 287561 287819 . - 0 ID=Physo140075;Parent=Physo140075;rank=3 scaffold_81 . exon 287561 287819 . - . ID=Physo140075.3;Parent=Physo140075;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_81 . CDS 287900 288125 . - 0 ID=Physo140075;Parent=Physo140075;rank=2 scaffold_81 . exon 287900 288125 . - . ID=Physo140075.2;Parent=Physo140075;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 288212 288552 . - 0 ID=Physo140075;Parent=Physo140075;rank=1 scaffold_81 . exon 288212 288552 . - . ID=Physo140075.1;Parent=Physo140075;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 . repeat_region 295533 295552 . ? . description=trf scaffold_81 ensembl protein_coding_gene 292966 296289 . - . ID=Physo140077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810066;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 292966 296289 . - . ID=Physo140077;Parent=Physo140077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 292966 296289 . - . ID=Physo140077.1;Parent=Physo140077;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_81 . CDS 293755 296289 . - 0 ID=Physo140077;Parent=Physo140077;rank=1 scaffold_81 ensembl protein_coding_gene 296617 298293 . - . ID=Physo140078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810067;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 296617 298293 . - . ID=Physo140078;Parent=Physo140078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 296617 298293 . - 0 ID=Physo140078;Parent=Physo140078;rank=1 scaffold_81 . exon 296617 298293 . - . ID=Physo140078.1;Parent=Physo140078;constitutive=1;rank=1 scaffold_81 . repeat_region 298783 298790 . ? . description=dust scaffold_81 . biological_region 306095 306098 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 299071 299891 . - . ID=Physo109264;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810011;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 299071 299891 . - . ID=Physo109264;Parent=Physo109264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 299071 299891 . - . ID=Physo109264.1;Parent=Physo109264;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 299156 299845 . - 0 ID=Physo109264;Parent=Physo109264;rank=1 scaffold_81 ensembl protein_coding_gene 301548 302977 . - . ID=Physo120688;biotype=protein_coding;external_name=estExt_Genewise1.C_810036;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 301548 302977 . - . ID=Physo120688;Parent=Physo120688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 301548 301695 . - . ID=Physo120688.6;Parent=Physo120688;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_81 . CDS 301673 301695 . - 0 ID=Physo120688;Parent=Physo120688;rank=6 scaffold_81 . CDS 301764 301882 . - 0 ID=Physo120688;Parent=Physo120688;rank=5 scaffold_81 . exon 301764 301882 . - . ID=Physo120688.5;Parent=Physo120688;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_81 . CDS 301965 302541 . - 0 ID=Physo120688;Parent=Physo120688;rank=4 scaffold_81 . exon 301965 302541 . - . ID=Physo120688.4;Parent=Physo120688;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_81 . CDS 302612 302723 . - 0 ID=Physo120688;Parent=Physo120688;rank=3 scaffold_81 . exon 302612 302723 . - . ID=Physo120688.3;Parent=Physo120688;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_81 . CDS 302797 302860 . - 0 ID=Physo120688;Parent=Physo120688;rank=2 scaffold_81 . exon 302797 302860 . - . ID=Physo120688.2;Parent=Physo120688;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 302930 302952 . - 0 ID=Physo120688;Parent=Physo120688;rank=1 scaffold_81 . exon 302930 302977 . - . ID=Physo120688.1;Parent=Physo120688;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_81 ensembl protein_coding_gene 303586 305814 . - . ID=Physo140081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810070;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 303586 305814 . - . ID=Physo140081;Parent=Physo140081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 303586 303622 . - 0 ID=Physo140081;Parent=Physo140081;rank=6 scaffold_81 . exon 303586 303622 . - . ID=Physo140081.6;Parent=Physo140081;constitutive=1;ensembl_phase=2;rank=6 scaffold_81 . CDS 303827 304403 . - 0 ID=Physo140081;Parent=Physo140081;rank=5 scaffold_81 . exon 303827 304403 . - . ID=Physo140081.5;Parent=Physo140081;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_81 . CDS 304474 304585 . - 0 ID=Physo140081;Parent=Physo140081;rank=4 scaffold_81 . exon 304474 304585 . - . ID=Physo140081.4;Parent=Physo140081;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_81 . CDS 304654 304708 . - 0 ID=Physo140081;Parent=Physo140081;rank=3 scaffold_81 . exon 304654 304708 . - . ID=Physo140081.3;Parent=Physo140081;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 304778 304832 . - 0 ID=Physo140081;Parent=Physo140081;rank=2 scaffold_81 . exon 304778 304832 . - . ID=Physo140081.2;Parent=Physo140081;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_81 . CDS 304929 305814 . - 0 ID=Physo140081;Parent=Physo140081;rank=1 scaffold_81 . exon 304929 305814 . - . ID=Physo140081.1;Parent=Physo140081;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 ensembl protein_coding_gene 306001 307915 . + . ID=Physo140082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810071;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 306001 307915 . + . ID=Physo140082;Parent=Physo140082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 306001 306927 . + 0 ID=Physo140082;Parent=Physo140082;rank=1 scaffold_81 . exon 306001 306927 . + . ID=Physo140082.1;Parent=Physo140082;constitutive=1;rank=1 scaffold_81 . CDS 307010 307120 . + 0 ID=Physo140082;Parent=Physo140082;rank=2 scaffold_81 . exon 307010 307120 . + . ID=Physo140082.2;Parent=Physo140082;constitutive=1;rank=2 scaffold_81 . CDS 307201 307556 . + 0 ID=Physo140082;Parent=Physo140082;rank=3 scaffold_81 . exon 307201 307556 . + . ID=Physo140082.3;Parent=Physo140082;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_81 . CDS 307628 307707 . + 0 ID=Physo140082;Parent=Physo140082;rank=4 scaffold_81 . exon 307628 307707 . + . ID=Physo140082.4;Parent=Physo140082;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_81 . CDS 307896 307915 . + 0 ID=Physo140082;Parent=Physo140082;rank=5 scaffold_81 . exon 307896 307915 . + . ID=Physo140082.5;Parent=Physo140082;constitutive=1;ensembl_phase=1;rank=5 scaffold_81 . repeat_region 313465 313538 . ? . description=trf scaffold_81 . repeat_region 313807 313831 . ? . description=trf scaffold_81 . repeat_region 314100 314133 . ? . description=trf scaffold_81 . repeat_region 314184 314222 . ? . description=trf scaffold_81 . repeat_region 314460 314515 . ? . description=trf scaffold_81 ensembl protein_coding_gene 317558 318861 . + . ID=Physo109265;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810012;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 317558 318861 . + . ID=Physo109265;Parent=Physo109265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 317558 317715 . + . ID=Physo109265.1;Parent=Physo109265;constitutive=1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 317593 317715 . + 0 ID=Physo109265;Parent=Physo109265;rank=1 scaffold_81 . CDS 317803 318861 . + 0 ID=Physo109265;Parent=Physo109265;rank=2 scaffold_81 . exon 317803 318861 . + . ID=Physo109265.2;Parent=Physo109265;constitutive=1;rank=2 scaffold_81 ensembl protein_coding_gene 315736 317125 . + . ID=Physo120701;biotype=protein_coding;external_name=estExt_Genewise1.C_810049;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 315736 317125 . + . ID=Physo120701;Parent=Physo120701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 315736 316313 . + . ID=Physo120701.1;Parent=Physo120701;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_81 . CDS 316060 316313 . + 0 ID=Physo120701;Parent=Physo120701;rank=1 scaffold_81 . CDS 316391 316567 . + 0 ID=Physo120701;Parent=Physo120701;rank=2 scaffold_81 . exon 316391 316567 . + . ID=Physo120701.2;Parent=Physo120701;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_81 . CDS 316648 316927 . + 0 ID=Physo120701;Parent=Physo120701;rank=3 scaffold_81 . exon 316648 316927 . + . ID=Physo120701.3;Parent=Physo120701;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 316994 317125 . + 0 ID=Physo120701;Parent=Physo120701;rank=4 scaffold_81 . exon 316994 317125 . + . ID=Physo120701.4;Parent=Physo120701;constitutive=1;rank=4 scaffold_81 ensembl protein_coding_gene 308479 310057 . - . ID=Physo140083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810072;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 308479 310057 . - . ID=Physo140083;Parent=Physo140083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 308479 308607 . - 0 ID=Physo140083;Parent=Physo140083;rank=4 scaffold_81 . exon 308479 308607 . - . ID=Physo140083.4;Parent=Physo140083;constitutive=1;rank=4 scaffold_81 . CDS 308681 309118 . - 0 ID=Physo140083;Parent=Physo140083;rank=3 scaffold_81 . exon 308681 309118 . - . ID=Physo140083.3;Parent=Physo140083;constitutive=1;rank=3 scaffold_81 . CDS 309256 309451 . - 0 ID=Physo140083;Parent=Physo140083;rank=2 scaffold_81 . exon 309256 309451 . - . ID=Physo140083.2;Parent=Physo140083;constitutive=1;ensembl_phase=2;rank=2 scaffold_81 . CDS 309549 310057 . - 0 ID=Physo140083;Parent=Physo140083;rank=1 scaffold_81 . exon 309549 310057 . - . ID=Physo140083.1;Parent=Physo140083;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 ensembl protein_coding_gene 310264 311701 . + . ID=Physo140084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810073;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 310264 311701 . + . ID=Physo140084;Parent=Physo140084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . exon 310264 311701 . + . ID=Physo140084.1;Parent=Physo140084;constitutive=1;ensembl_phase=-1;rank=1 scaffold_81 . CDS 310283 311701 . + 0 ID=Physo140084;Parent=Physo140084;rank=1 scaffold_81 ensembl protein_coding_gene 312048 313798 . - . ID=Physo158092;biotype=protein_coding;external_name=C_scaffold_81000012;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 312048 313798 . - . ID=Physo158092;Parent=Physo158092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 312048 312245 . - 0 ID=Physo158092;Parent=Physo158092;rank=5 scaffold_81 . exon 312048 312245 . - . ID=Physo158092.5;Parent=Physo158092;constitutive=1;rank=5 scaffold_81 . CDS 312317 312865 . - 0 ID=Physo158092;Parent=Physo158092;rank=4 scaffold_81 . exon 312317 312865 . - . ID=Physo158092.4;Parent=Physo158092;constitutive=1;rank=4 scaffold_81 . CDS 312934 313368 . - 0 ID=Physo158092;Parent=Physo158092;rank=3 scaffold_81 . exon 312934 313368 . - . ID=Physo158092.3;Parent=Physo158092;constitutive=1;rank=3 scaffold_81 . CDS 313452 313634 . - 0 ID=Physo158092;Parent=Physo158092;rank=2 scaffold_81 . exon 313452 313634 . - . ID=Physo158092.2;Parent=Physo158092;constitutive=1;rank=2 scaffold_81 . CDS 313718 313798 . - 0 ID=Physo158092;Parent=Physo158092;rank=1 scaffold_81 . exon 313718 313798 . - . ID=Physo158092.1;Parent=Physo158092;constitutive=1;rank=1 scaffold_81 . biological_region 319217 319220 0.999 + . logic_name=eponine scaffold_81 . biological_region 322736 322737 0.999 - . logic_name=eponine scaffold_81 . biological_region 322757 322759 0.999 - . logic_name=eponine scaffold_81 . biological_region 322783 322785 0.999 - . logic_name=eponine scaffold_81 . repeat_region 325480 325488 . ? . description=dust scaffold_81 . biological_region 325839 325842 0.999 + . logic_name=eponine scaffold_81 . biological_region 325899 325905 0.999 - . logic_name=eponine scaffold_81 . biological_region 326016 326017 0.999 + . logic_name=eponine scaffold_81 . biological_region 326037 326040 0.999 + . logic_name=eponine scaffold_81 . biological_region 326056 326061 0.999 - . logic_name=eponine scaffold_81 . biological_region 326112 326115 0.999 + . logic_name=eponine scaffold_81 . biological_region 326114 326116 0.999 - . logic_name=eponine scaffold_81 . biological_region 326520 326522 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 323855 325439 . + . ID=Physo140089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810078;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 323855 325439 . + . ID=Physo140089;Parent=Physo140089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 323855 324367 . + 0 ID=Physo140089;Parent=Physo140089;rank=1 scaffold_81 . exon 323855 324367 . + . ID=Physo140089.1;Parent=Physo140089;constitutive=1;rank=1 scaffold_81 . CDS 324436 324535 . + 0 ID=Physo140089;Parent=Physo140089;rank=2 scaffold_81 . exon 324436 324535 . + . ID=Physo140089.2;Parent=Physo140089;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_81 . CDS 324604 324736 . + 0 ID=Physo140089;Parent=Physo140089;rank=3 scaffold_81 . exon 324604 324736 . + . ID=Physo140089.3;Parent=Physo140089;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_81 . CDS 324797 325439 . + 0 ID=Physo140089;Parent=Physo140089;rank=4 scaffold_81 . exon 324797 325439 . + . ID=Physo140089.4;Parent=Physo140089;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 ensembl protein_coding_gene 325660 328314 . + . ID=Physo140090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810079;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 325660 328314 . + . ID=Physo140090;Parent=Physo140090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 325660 328314 . + 0 ID=Physo140090;Parent=Physo140090;rank=1 scaffold_81 . exon 325660 328314 . + . ID=Physo140090.1;Parent=Physo140090;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 321014 323586 . + . ID=Physo158094;biotype=protein_coding;external_name=C_scaffold_81000014;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 321014 323586 . + . ID=Physo158094;Parent=Physo158094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 321014 321298 . + 0 ID=Physo158094;Parent=Physo158094;rank=1 scaffold_81 . exon 321014 321298 . + . ID=Physo158094.1;Parent=Physo158094;constitutive=1;rank=1 scaffold_81 . CDS 321430 321529 . + 0 ID=Physo158094;Parent=Physo158094;rank=2 scaffold_81 . exon 321430 321529 . + . ID=Physo158094.2;Parent=Physo158094;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_81 . CDS 321602 321737 . + 0 ID=Physo158094;Parent=Physo158094;rank=3 scaffold_81 . exon 321602 321737 . + . ID=Physo158094.3;Parent=Physo158094;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_81 . CDS 321802 322429 . + 0 ID=Physo158094;Parent=Physo158094;rank=4 scaffold_81 . exon 321802 322429 . + . ID=Physo158094.4;Parent=Physo158094;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 . CDS 322537 323586 . + 0 ID=Physo158094;Parent=Physo158094;rank=5 scaffold_81 . exon 322537 323586 . + . ID=Physo158094.5;Parent=Physo158094;constitutive=1;rank=5 scaffold_81 . repeat_region 330974 331015 . ? . description=trf scaffold_81 ensembl protein_coding_gene 333755 335401 . - . ID=Physo109266;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_810013;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 333755 335401 . - . ID=Physo109266;Parent=Physo109266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 333755 334205 . - 0 ID=Physo109266;Parent=Physo109266;rank=3 scaffold_81 . exon 333755 334205 . - . ID=Physo109266.3;Parent=Physo109266;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 334280 334635 . - 0 ID=Physo109266;Parent=Physo109266;rank=2 scaffold_81 . exon 334280 334635 . - . ID=Physo109266.2;Parent=Physo109266;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 334766 335401 . - 0 ID=Physo109266;Parent=Physo109266;rank=1 scaffold_81 . exon 334766 335401 . - . ID=Physo109266.1;Parent=Physo109266;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 328501 333527 . - . ID=Physo140091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810080;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 328501 333527 . - . ID=Physo140091;Parent=Physo140091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 328501 329577 . - 0 ID=Physo140091;Parent=Physo140091;rank=12 scaffold_81 . exon 328501 329577 . - . ID=Physo140091.12;Parent=Physo140091;constitutive=1;rank=12 scaffold_81 . CDS 329929 330121 . - 0 ID=Physo140091;Parent=Physo140091;rank=11 scaffold_81 . exon 329929 330121 . - . ID=Physo140091.11;Parent=Physo140091;constitutive=1;ensembl_phase=2;rank=11 scaffold_81 . CDS 330195 330298 . - 0 ID=Physo140091;Parent=Physo140091;rank=10 scaffold_81 . exon 330195 330298 . - . ID=Physo140091.10;Parent=Physo140091;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_81 . CDS 330365 330418 . - 0 ID=Physo140091;Parent=Physo140091;rank=9 scaffold_81 . exon 330365 330418 . - . ID=Physo140091.9;Parent=Physo140091;constitutive=1;rank=9 scaffold_81 . CDS 330593 331004 . - 0 ID=Physo140091;Parent=Physo140091;rank=8 scaffold_81 . exon 330593 331004 . - . ID=Physo140091.8;Parent=Physo140091;constitutive=1;ensembl_phase=2;rank=8 scaffold_81 . CDS 331164 331272 . - 0 ID=Physo140091;Parent=Physo140091;rank=7 scaffold_81 . exon 331164 331272 . - . ID=Physo140091.7;Parent=Physo140091;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_81 . CDS 331357 332270 . - 0 ID=Physo140091;Parent=Physo140091;rank=6 scaffold_81 . exon 331357 332270 . - . ID=Physo140091.6;Parent=Physo140091;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_81 . CDS 332347 332453 . - 0 ID=Physo140091;Parent=Physo140091;rank=5 scaffold_81 . exon 332347 332453 . - . ID=Physo140091.5;Parent=Physo140091;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_81 . CDS 332528 332638 . - 0 ID=Physo140091;Parent=Physo140091;rank=4 scaffold_81 . exon 332528 332638 . - . ID=Physo140091.4;Parent=Physo140091;constitutive=1;rank=4 scaffold_81 . CDS 332708 332825 . - 0 ID=Physo140091;Parent=Physo140091;rank=3 scaffold_81 . exon 332708 332825 . - . ID=Physo140091.3;Parent=Physo140091;constitutive=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 332996 333123 . - 0 ID=Physo140091;Parent=Physo140091;rank=2 scaffold_81 . exon 332996 333123 . - . ID=Physo140091.2;Parent=Physo140091;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_81 . CDS 333357 333527 . - 0 ID=Physo140091;Parent=Physo140091;rank=1 scaffold_81 . exon 333357 333527 . - . ID=Physo140091.1;Parent=Physo140091;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 335574 336713 . + . ID=Physo140093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810082;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 335574 336713 . + . ID=Physo140093;Parent=Physo140093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 335574 336713 . + 0 ID=Physo140093;Parent=Physo140093;rank=1 scaffold_81 . exon 335574 336713 . + . ID=Physo140093.1;Parent=Physo140093;constitutive=1;rank=1 scaffold_81 . repeat_region 338325 338333 . ? . description=dust scaffold_81 . repeat_region 339157 339164 . ? . description=dust scaffold_81 . biological_region 341989 341990 0.999 + . logic_name=eponine scaffold_81 . biological_region 344182 344183 0.999 - . logic_name=eponine scaffold_81 ensembl protein_coding_gene 339177 339956 . - . ID=Physo140094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810083;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 339177 339956 . - . ID=Physo140094;Parent=Physo140094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 339177 339956 . - 0 ID=Physo140094;Parent=Physo140094;rank=1 scaffold_81 . exon 339177 339956 . - . ID=Physo140094.1;Parent=Physo140094;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 341795 343570 . - . ID=Physo140095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810084;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 341795 343570 . - . ID=Physo140095;Parent=Physo140095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 341795 342697 . - 0 ID=Physo140095;Parent=Physo140095;rank=5 scaffold_81 . exon 341795 342697 . - . ID=Physo140095.5;Parent=Physo140095;constitutive=1;rank=5 scaffold_81 . CDS 342764 342903 . - 0 ID=Physo140095;Parent=Physo140095;rank=4 scaffold_81 . exon 342764 342903 . - . ID=Physo140095.4;Parent=Physo140095;constitutive=1;ensembl_phase=1;rank=4 scaffold_81 . CDS 342960 343093 . - 0 ID=Physo140095;Parent=Physo140095;rank=3 scaffold_81 . exon 342960 343093 . - . ID=Physo140095.3;Parent=Physo140095;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_81 . CDS 343152 343202 . - 0 ID=Physo140095;Parent=Physo140095;rank=2 scaffold_81 . exon 343152 343202 . - . ID=Physo140095.2;Parent=Physo140095;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_81 . CDS 343362 343570 . - 0 ID=Physo140095;Parent=Physo140095;rank=1 scaffold_81 . exon 343362 343570 . - . ID=Physo140095.1;Parent=Physo140095;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 ensembl protein_coding_gene 347361 349555 . - . ID=Physo140097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810086;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 347361 349555 . - . ID=Physo140097;Parent=Physo140097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 347361 347444 . - 0 ID=Physo140097;Parent=Physo140097;rank=5 scaffold_81 . exon 347361 347444 . - . ID=Physo140097.5;Parent=Physo140097;constitutive=1;rank=5 scaffold_81 . CDS 347524 348590 . - 0 ID=Physo140097;Parent=Physo140097;rank=4 scaffold_81 . exon 347524 348590 . - . ID=Physo140097.4;Parent=Physo140097;constitutive=1;ensembl_phase=1;rank=4 scaffold_81 . CDS 348722 349288 . - 0 ID=Physo140097;Parent=Physo140097;rank=3 scaffold_81 . CDS 349374 349399 . - 0 ID=Physo140097;Parent=Physo140097;rank=2 scaffold_81 . CDS 349485 349555 . - 0 ID=Physo140097;Parent=Physo140097;rank=1 scaffold_81 ensembl protein_coding_gene 345475 347203 . + . ID=Physo158102;biotype=protein_coding;external_name=C_scaffold_81000022;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 345475 347203 . + . ID=Physo158102;Parent=Physo158102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 345475 346051 . + 0 ID=Physo158102;Parent=Physo158102;rank=1 scaffold_81 . exon 345475 346051 . + . ID=Physo158102.1;Parent=Physo158102;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 346085 346107 . + 0 ID=Physo158102;Parent=Physo158102;rank=2 scaffold_81 . exon 346085 346107 . + . ID=Physo158102.2;Parent=Physo158102;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 346182 346272 . + 0 ID=Physo158102;Parent=Physo158102;rank=3 scaffold_81 . exon 346182 346272 . + . ID=Physo158102.3;Parent=Physo158102;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_81 . CDS 346337 346395 . + 0 ID=Physo158102;Parent=Physo158102;rank=4 scaffold_81 . exon 346337 346395 . + . ID=Physo158102.4;Parent=Physo158102;constitutive=1;ensembl_phase=1;rank=4 scaffold_81 . CDS 346475 346504 . + 0 ID=Physo158102;Parent=Physo158102;rank=5 scaffold_81 . exon 346475 346504 . + . ID=Physo158102.5;Parent=Physo158102;constitutive=1;rank=5 scaffold_81 . CDS 346575 346858 . + 0 ID=Physo158102;Parent=Physo158102;rank=6 scaffold_81 . exon 346575 346858 . + . ID=Physo158102.6;Parent=Physo158102;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_81 . CDS 346945 347203 . + 0 ID=Physo158102;Parent=Physo158102;rank=7 scaffold_81 . exon 346945 347203 . + . ID=Physo158102.7;Parent=Physo158102;constitutive=1;ensembl_phase=2;rank=7 scaffold_81 . repeat_region 357443 357537 . ? . description=trf scaffold_81 . repeat_region 357866 357940 . ? . description=trf scaffold_81 ensembl tRNA_gene 357948 358019 . + . ID=EPrPSOG00000000039;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_81 ensembl transcript 357948 358019 . + . ID=EPrPSOT00000000039;Parent=EPrPSOG00000000039;biotype=tRNA;logic_name=ncrna_eg scaffold_81 ensembl tRNA_gene 357338 357409 . - . ID=EPrPSOG00000000134;biotype=tRNA;description=tRNA-Trp for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Trp];external_name=tRNA-Trp;logic_name=ncrna_eg scaffold_81 ensembl transcript 357338 357409 . - . ID=EPrPSOT00000000134;Parent=EPrPSOG00000000134;biotype=tRNA;logic_name=ncrna_eg scaffold_81 ensembl snRNA_gene 357119 357223 . + . ID=EPrPSOG00000000237;biotype=snRNA;description=U6 spliceosomal RNA [Source:RFAM%3BAcc:RF00026];external_name=U6;logic_name=ncrna_eg scaffold_81 ensembl snRNA 357119 357223 . + . ID=EPrPSOT00000000237;Parent=EPrPSOG00000000237;biotype=snRNA;logic_name=ncrna_eg scaffold_81 ensembl tRNA_gene 356759 356839 . + . ID=EPrPSOG00000000275;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_81 ensembl transcript 356759 356839 . + . ID=EPrPSOT00000000275;Parent=EPrPSOG00000000275;biotype=tRNA;logic_name=ncrna_eg scaffold_81 . exon 357948 358019 . + . ID=EPrPSOE00000000039;Parent=EPrPSOT00000000039;constitutive=1;rank=1 scaffold_81 . exon 357338 357409 . - . ID=EPrPSOE00000000134;Parent=EPrPSOT00000000134;constitutive=1;rank=1 scaffold_81 . exon 357119 357223 . + . ID=EPrPSOE00000000237;Parent=EPrPSOT00000000237;constitutive=1;rank=1 scaffold_81 . exon 356759 356839 . + . ID=EPrPSOE00000000275;Parent=EPrPSOT00000000275;constitutive=1;rank=1 scaffold_81 . exon 348722 349288 . - . ID=Physo140097.3;Parent=Physo140097;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_81 . exon 349374 349399 . - . ID=Physo140097.2;Parent=Physo140097;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_81 . exon 349485 349555 . - . ID=Physo140097.1;Parent=Physo140097;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_81 ensembl protein_coding_gene 351526 353133 . - . ID=Physo140099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_810088;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 351526 353133 . - . ID=Physo140099;Parent=Physo140099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 351526 352168 . - 0 ID=Physo140099;Parent=Physo140099;rank=4 scaffold_81 . exon 351526 352168 . - . ID=Physo140099.4;Parent=Physo140099;constitutive=1;ensembl_phase=2;rank=4 scaffold_81 . CDS 352242 352377 . - 0 ID=Physo140099;Parent=Physo140099;rank=3 scaffold_81 . exon 352242 352377 . - . ID=Physo140099.3;Parent=Physo140099;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_81 . CDS 352448 352547 . - 0 ID=Physo140099;Parent=Physo140099;rank=2 scaffold_81 . exon 352448 352547 . - . ID=Physo140099.2;Parent=Physo140099;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_81 . CDS 352639 353133 . - 0 ID=Physo140099;Parent=Physo140099;rank=1 scaffold_81 . exon 352639 353133 . - . ID=Physo140099.1;Parent=Physo140099;constitutive=1;rank=1 scaffold_81 ensembl protein_coding_gene 349664 351398 . + . ID=Physo158104;biotype=protein_coding;external_name=C_scaffold_81000024;logic_name=jgi_physo1_1 scaffold_81 ensembl transcript 349664 351398 . + . ID=Physo158104;Parent=Physo158104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_81 . CDS 349664 349763 . + 0 ID=Physo158104;Parent=Physo158104;rank=1 scaffold_81 . exon 349664 349763 . + . ID=Physo158104.1;Parent=Physo158104;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_81 . CDS 349844 349965 . + 0 ID=Physo158104;Parent=Physo158104;rank=2 scaffold_81 . exon 349844 349965 . + . ID=Physo158104.2;Parent=Physo158104;constitutive=1;ensembl_phase=1;rank=2 scaffold_81 . CDS 350037 350120 . + 0 ID=Physo158104;Parent=Physo158104;rank=3 scaffold_81 . exon 350037 350120 . + . ID=Physo158104.3;Parent=Physo158104;constitutive=1;rank=3 scaffold_81 . CDS 350193 350243 . + 0 ID=Physo158104;Parent=Physo158104;rank=4 scaffold_81 . exon 350193 350243 . + . ID=Physo158104.4;Parent=Physo158104;constitutive=1;rank=4 scaffold_81 . CDS 350327 350617 . + 0 ID=Physo158104;Parent=Physo158104;rank=5 scaffold_81 . exon 350327 350617 . + . ID=Physo158104.5;Parent=Physo158104;constitutive=1;rank=5 scaffold_81 . CDS 350716 350777 . + 0 ID=Physo158104;Parent=Physo158104;rank=6 scaffold_81 . exon 350716 350777 . + . ID=Physo158104.6;Parent=Physo158104;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_81 . CDS 350891 351027 . + 0 ID=Physo158104;Parent=Physo158104;rank=7 scaffold_81 . exon 350891 351027 . + . ID=Physo158104.7;Parent=Physo158104;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_81 . CDS 351100 351398 . + 0 ID=Physo158104;Parent=Physo158104;rank=8 scaffold_81 . exon 351100 351398 . + . ID=Physo158104.8;Parent=Physo158104;constitutive=1;ensembl_phase=1;rank=8 ##gff-version 3 ##sequence-region scaffold_85 1 360605 scaffold_85 . repeat_region 772 805 . ? . description=trf scaffold_85 . repeat_region 4071 4080 . ? . description=dust scaffold_85 . repeat_region 4324 4388 . ? . description=trf scaffold_85 . biological_region 4452 4453 0.999 + . logic_name=eponine scaffold_85 . biological_region 4463 4467 0.999 + . logic_name=eponine scaffold_85 . repeat_region 4534 4578 . ? . description=trf scaffold_85 . biological_region 4557 4558 0.999 + . logic_name=eponine scaffold_85 . biological_region 4573 4581 0.999 - . logic_name=eponine scaffold_85 . repeat_region 6138 6216 . ? . description=trf scaffold_85 . repeat_region 7711 7726 . ? . description=dust scaffold_85 . repeat_region 8035 8043 . ? . description=dust scaffold_85 . repeat_region 8518 8525 . ? . description=dust scaffold_85 ensembl protein_coding_gene 923 3675 . - . ID=Physo140375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850001;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 923 3675 . - . ID=Physo140375;Parent=Physo140375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 923 1689 . - 0 ID=Physo140375;Parent=Physo140375;rank=4 scaffold_85 . exon 923 1689 . - . ID=Physo140375.4;Parent=Physo140375;constitutive=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 1743 2781 . - 0 ID=Physo140375;Parent=Physo140375;rank=3 scaffold_85 . exon 1743 2781 . - . ID=Physo140375.3;Parent=Physo140375;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_85 . CDS 2839 3106 . - 0 ID=Physo140375;Parent=Physo140375;rank=2 scaffold_85 . exon 2839 3106 . - . ID=Physo140375.2;Parent=Physo140375;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 3383 3675 . - 0 ID=Physo140375;Parent=Physo140375;rank=1 scaffold_85 . exon 3383 3675 . - . ID=Physo140375.1;Parent=Physo140375;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 5102 5875 . + . ID=Physo140376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850002;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 5102 5875 . + . ID=Physo140376;Parent=Physo140376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 5102 5875 . + 0 ID=Physo140376;Parent=Physo140376;rank=1 scaffold_85 . exon 5102 5875 . + . ID=Physo140376.1;Parent=Physo140376;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 11412 13971 . + . ID=Physo140377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850003;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 11412 13971 . + . ID=Physo140377;Parent=Physo140377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 11412 11771 . + 0 ID=Physo140377;Parent=Physo140377;rank=1 scaffold_85 . exon 11412 11771 . + . ID=Physo140377.1;Parent=Physo140377;constitutive=1;rank=1 scaffold_85 . CDS 11843 12122 . + 0 ID=Physo140377;Parent=Physo140377;rank=2 scaffold_85 . exon 11843 12122 . + . ID=Physo140377.2;Parent=Physo140377;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_85 . CDS 12171 12299 . + 0 ID=Physo140377;Parent=Physo140377;rank=3 scaffold_85 . exon 12171 12299 . + . ID=Physo140377.3;Parent=Physo140377;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_85 . CDS 12453 12710 . + 0 ID=Physo140377;Parent=Physo140377;rank=4 scaffold_85 . exon 12453 12710 . + . ID=Physo140377.4;Parent=Physo140377;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 12790 13186 . + 0 ID=Physo140377;Parent=Physo140377;rank=5 scaffold_85 . exon 12790 13186 . + . ID=Physo140377.5;Parent=Physo140377;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_85 . CDS 13310 13889 . + 0 ID=Physo140377;Parent=Physo140377;rank=6 scaffold_85 . exon 13310 13889 . + . ID=Physo140377.6;Parent=Physo140377;constitutive=1;ensembl_phase=2;rank=6 scaffold_85 . CDS 13927 13971 . + 0 ID=Physo140377;Parent=Physo140377;rank=7 scaffold_85 . exon 13927 13971 . + . ID=Physo140377.7;Parent=Physo140377;constitutive=1;rank=7 scaffold_85 ensembl protein_coding_gene 18499 19084 . - . ID=Physo140378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850004;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 18499 19084 . - . ID=Physo140378;Parent=Physo140378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 18499 18502 . - 0 ID=Physo140378;Parent=Physo140378;rank=2 scaffold_85 . exon 18499 18502 . - . ID=Physo140378.2;Parent=Physo140378;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 18546 19084 . - 0 ID=Physo140378;Parent=Physo140378;rank=1 scaffold_85 . exon 18546 19084 . - . ID=Physo140378.1;Parent=Physo140378;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . repeat_region 20055 27739 . ? . description=dust scaffold_85 . repeat_region 27740 29139 . ? . description=dust scaffold_85 . biological_region 37828 37830 0.999 + . logic_name=eponine scaffold_85 . biological_region 38018 38024 0.999 + . logic_name=eponine scaffold_85 . biological_region 38062 38064 0.999 - . logic_name=eponine scaffold_85 . biological_region 38094 38096 0.999 - . logic_name=eponine scaffold_85 . biological_region 38105 38109 0.999 - . logic_name=eponine scaffold_85 . biological_region 38121 38125 0.999 - . logic_name=eponine scaffold_85 . biological_region 38150 38154 0.999 - . logic_name=eponine scaffold_85 . biological_region 38167 38168 0.999 - . logic_name=eponine scaffold_85 . biological_region 38184 38185 0.999 - . logic_name=eponine scaffold_85 . biological_region 38206 38210 0.999 + . logic_name=eponine scaffold_85 . biological_region 38321 38326 0.999 + . logic_name=eponine scaffold_85 . biological_region 38419 38421 0.999 - . logic_name=eponine scaffold_85 . biological_region 38762 38767 0.999 - . logic_name=eponine scaffold_85 ensembl protein_coding_gene 29435 33405 . + . ID=Physo140379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850005;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 29435 33405 . + . ID=Physo140379;Parent=Physo140379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 29435 29883 . + 0 ID=Physo140379;Parent=Physo140379;rank=1 scaffold_85 . exon 29435 29883 . + . ID=Physo140379.1;Parent=Physo140379;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 29918 33365 . + 0 ID=Physo140379;Parent=Physo140379;rank=2 scaffold_85 . exon 29918 33405 . + . ID=Physo140379.2;Parent=Physo140379;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_85 ensembl protein_coding_gene 33534 35385 . + . ID=Physo140380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850006;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 33534 35385 . + . ID=Physo140380;Parent=Physo140380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 33534 33791 . + 0 ID=Physo140380;Parent=Physo140380;rank=1 scaffold_85 . exon 33534 33791 . + . ID=Physo140380.1;Parent=Physo140380;constitutive=1;rank=1 scaffold_85 . CDS 33997 34710 . + 0 ID=Physo140380;Parent=Physo140380;rank=2 scaffold_85 . exon 33997 34710 . + . ID=Physo140380.2;Parent=Physo140380;constitutive=1;rank=2 scaffold_85 . CDS 35041 35385 . + 0 ID=Physo140380;Parent=Physo140380;rank=3 scaffold_85 . exon 35041 35385 . + . ID=Physo140380.3;Parent=Physo140380;constitutive=1;rank=3 scaffold_85 ensembl protein_coding_gene 37488 38166 . - . ID=Physo140381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850007;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 37488 38166 . - . ID=Physo140381;Parent=Physo140381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 37488 38166 . - . ID=Physo140381.1;Parent=Physo140381;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_85 . CDS 37516 38166 . - 0 ID=Physo140381;Parent=Physo140381;rank=1 scaffold_85 . repeat_region 39566 39659 . - . description=Sola3-1_PS scaffold_85 . repeat_region 40621 40663 . ? . description=trf scaffold_85 . repeat_region 44289 44327 . ? . description=trf scaffold_85 . repeat_region 44295 44327 . ? . description=trf scaffold_85 . repeat_region 45584 45616 . ? . description=dust scaffold_85 . repeat_region 45584 45616 . ? . description=trf scaffold_85 ensembl protein_coding_gene 40056 43332 . + . ID=Physo140382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850008;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 40056 43332 . + . ID=Physo140382;Parent=Physo140382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 40056 43209 . + 0 ID=Physo140382;Parent=Physo140382;rank=1 scaffold_85 . exon 40056 43209 . + . ID=Physo140382.1;Parent=Physo140382;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . CDS 43241 43332 . + 0 ID=Physo140382;Parent=Physo140382;rank=2 scaffold_85 . exon 43241 43332 . + . ID=Physo140382.2;Parent=Physo140382;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 ensembl protein_coding_gene 43535 45045 . - . ID=Physo140383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850009;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 43535 45045 . - . ID=Physo140383;Parent=Physo140383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 43535 44716 . - . ID=Physo140383.2;Parent=Physo140383;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_85 . CDS 43662 44716 . - 0 ID=Physo140383;Parent=Physo140383;rank=2 scaffold_85 . CDS 44802 45045 . - 0 ID=Physo140383;Parent=Physo140383;rank=1 scaffold_85 . exon 44802 45045 . - . ID=Physo140383.1;Parent=Physo140383;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 45583 48786 . + . ID=Physo140384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850010;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 45583 48786 . + . ID=Physo140384;Parent=Physo140384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 45583 48002 . + 0 ID=Physo140384;Parent=Physo140384;rank=1 scaffold_85 . exon 45583 48002 . + . ID=Physo140384.1;Parent=Physo140384;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 48265 48784 . + 0 ID=Physo140384;Parent=Physo140384;rank=2 scaffold_85 . exon 48265 48786 . + . ID=Physo140384.2;Parent=Physo140384;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_85 . biological_region 52998 52998 0.999 - . logic_name=eponine scaffold_85 . biological_region 53059 53061 0.999 - . logic_name=eponine scaffold_85 . biological_region 53062 53065 0.999 + . logic_name=eponine scaffold_85 . biological_region 53609 53612 0.999 + . logic_name=eponine scaffold_85 . biological_region 54596 54600 0.999 - . logic_name=eponine scaffold_85 . biological_region 54620 54625 0.999 - . logic_name=eponine scaffold_85 . biological_region 54640 54646 0.999 - . logic_name=eponine scaffold_85 . biological_region 54664 54664 0.999 - . logic_name=eponine scaffold_85 . biological_region 54677 54685 0.999 + . logic_name=eponine scaffold_85 . biological_region 56822 56823 0.999 - . logic_name=eponine scaffold_85 ensembl protein_coding_gene 48896 49561 . + . ID=Physo109289;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_850001;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 48896 49561 . + . ID=Physo109289;Parent=Physo109289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 48896 49561 . + 0 ID=Physo109289;Parent=Physo109289;rank=1 scaffold_85 . exon 48896 49561 . + . ID=Physo109289.1;Parent=Physo109289;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 49711 53736 . - . ID=Physo140386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850012;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 49711 53736 . - . ID=Physo140386;Parent=Physo140386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 49711 53736 . - 0 ID=Physo140386;Parent=Physo140386;rank=1 scaffold_85 . exon 49711 53736 . - . ID=Physo140386.1;Parent=Physo140386;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 54548 60101 . + . ID=Physo140387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850013;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 54548 60101 . + . ID=Physo140387;Parent=Physo140387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 54548 56794 . + 0 ID=Physo140387;Parent=Physo140387;rank=1 scaffold_85 . exon 54548 56794 . + . ID=Physo140387.1;Parent=Physo140387;constitutive=1;rank=1 scaffold_85 . CDS 57213 60101 . + 0 ID=Physo140387;Parent=Physo140387;rank=2 scaffold_85 . exon 57213 60101 . + . ID=Physo140387.2;Parent=Physo140387;constitutive=1;rank=2 scaffold_85 . repeat_region 61979 62018 . ? . description=trf scaffold_85 . repeat_region 63802 63813 . ? . description=dust scaffold_85 . repeat_region 64055 64083 . ? . description=trf scaffold_85 . repeat_region 64881 64925 . ? . description=trf scaffold_85 . repeat_region 67849 67898 . ? . description=dust scaffold_85 . repeat_region 67879 67898 . ? . description=trf scaffold_85 ensembl protein_coding_gene 62783 63543 . + . ID=Physo140389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850015;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 62783 63543 . + . ID=Physo140389;Parent=Physo140389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 62783 63543 . + . ID=Physo140389.1;Parent=Physo140389;constitutive=1;ensembl_phase=-1;rank=1 scaffold_85 . CDS 62845 63543 . + 0 ID=Physo140389;Parent=Physo140389;rank=1 scaffold_85 ensembl protein_coding_gene 63786 64721 . + . ID=Physo140390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850016;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 63786 64721 . + . ID=Physo140390;Parent=Physo140390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 63786 63791 . + 0 ID=Physo140390;Parent=Physo140390;rank=1 scaffold_85 . exon 63786 63791 . + . ID=Physo140390.1;Parent=Physo140390;constitutive=1;rank=1 scaffold_85 . CDS 63879 63944 . + 0 ID=Physo140390;Parent=Physo140390;rank=2 scaffold_85 . exon 63879 63944 . + . ID=Physo140390.2;Parent=Physo140390;constitutive=1;rank=2 scaffold_85 . CDS 64020 64721 . + 0 ID=Physo140390;Parent=Physo140390;rank=3 scaffold_85 . exon 64020 64721 . + . ID=Physo140390.3;Parent=Physo140390;constitutive=1;rank=3 scaffold_85 ensembl protein_coding_gene 67699 69195 . + . ID=Physo140391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850017;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 67699 69195 . + . ID=Physo140391;Parent=Physo140391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 67699 69195 . + 0 ID=Physo140391;Parent=Physo140391;rank=1 scaffold_85 . exon 67699 69195 . + . ID=Physo140391.1;Parent=Physo140391;constitutive=1;rank=1 scaffold_85 . biological_region 68749 68752 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 74314 75937 . + . ID=Physo140392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850018;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 74314 75937 . + . ID=Physo140392;Parent=Physo140392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 74314 74408 . + 0 ID=Physo140392;Parent=Physo140392;rank=1 scaffold_85 . exon 74314 74408 . + . ID=Physo140392.1;Parent=Physo140392;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 74485 74618 . + 0 ID=Physo140392;Parent=Physo140392;rank=2 scaffold_85 . exon 74485 74618 . + . ID=Physo140392.2;Parent=Physo140392;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 74685 75937 . + 0 ID=Physo140392;Parent=Physo140392;rank=3 scaffold_85 . exon 74685 75937 . + . ID=Physo140392.3;Parent=Physo140392;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 ensembl protein_coding_gene 76352 78897 . - . ID=Physo140393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850019;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 76352 78897 . - . ID=Physo140393;Parent=Physo140393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 76352 76375 . - 0 ID=Physo140393;Parent=Physo140393;rank=6 scaffold_85 . exon 76352 76375 . - . ID=Physo140393.6;Parent=Physo140393;constitutive=1;rank=6 scaffold_85 . CDS 76421 76758 . - 0 ID=Physo140393;Parent=Physo140393;rank=5 scaffold_85 . exon 76421 76758 . - . ID=Physo140393.5;Parent=Physo140393;constitutive=1;ensembl_phase=1;rank=5 scaffold_85 . CDS 76827 76887 . - 0 ID=Physo140393;Parent=Physo140393;rank=4 scaffold_85 . exon 76827 76887 . - . ID=Physo140393.4;Parent=Physo140393;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_85 . CDS 76970 77086 . - 0 ID=Physo140393;Parent=Physo140393;rank=3 scaffold_85 . exon 76970 77086 . - . ID=Physo140393.3;Parent=Physo140393;constitutive=1;rank=3 scaffold_85 . CDS 77146 77392 . - 0 ID=Physo140393;Parent=Physo140393;rank=2 scaffold_85 . exon 77146 77392 . - . ID=Physo140393.2;Parent=Physo140393;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 77801 78897 . - 0 ID=Physo140393;Parent=Physo140393;rank=1 scaffold_85 . exon 77801 78897 . - . ID=Physo140393.1;Parent=Physo140393;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . repeat_region 79661 79691 . ? . description=dust scaffold_85 . repeat_region 79664 79692 . ? . description=trf scaffold_85 . repeat_region 80017 80324 . + . description=GypsyPi-1c_LTR scaffold_85 . repeat_region 80325 80829 . + . description=GypsyPi-1c_I-int scaffold_85 . repeat_region 81861 81922 . ? . description=trf scaffold_85 . repeat_region 81861 81924 . ? . description=dust scaffold_85 . repeat_region 81861 81929 . ? . description=trf scaffold_85 . repeat_region 83699 83793 . ? . description=trf scaffold_85 . repeat_region 83728 83793 . ? . description=trf scaffold_85 ensembl protein_coding_gene 81929 84360 . + . ID=Physo140394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850020;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 81929 84360 . + . ID=Physo140394;Parent=Physo140394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 81929 82482 . + 0 ID=Physo140394;Parent=Physo140394;rank=1 scaffold_85 . exon 81929 82482 . + . ID=Physo140394.1;Parent=Physo140394;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 82551 84360 . + 0 ID=Physo140394;Parent=Physo140394;rank=2 scaffold_85 . exon 82551 84360 . + . ID=Physo140394.2;Parent=Physo140394;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 ensembl protein_coding_gene 86853 90577 . - . ID=Physo140395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850021;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 86853 90577 . - . ID=Physo140395;Parent=Physo140395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 86853 87247 . - 0 ID=Physo140395;Parent=Physo140395;rank=2 scaffold_85 . exon 86853 87247 . - . ID=Physo140395.2;Parent=Physo140395;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 87691 90577 . - 0 ID=Physo140395;Parent=Physo140395;rank=1 scaffold_85 . exon 87691 90577 . - . ID=Physo140395.1;Parent=Physo140395;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . biological_region 87751 87759 0.999 + . logic_name=eponine scaffold_85 . biological_region 89045 89050 0.999 - . logic_name=eponine scaffold_85 . biological_region 94768 94772 0.999 - . logic_name=eponine scaffold_85 . biological_region 95890 95892 0.999 - . logic_name=eponine scaffold_85 ensembl protein_coding_gene 92708 95082 . - . ID=Physo140396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850022;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 92708 95082 . - . ID=Physo140396;Parent=Physo140396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 92708 93814 . - 0 ID=Physo140396;Parent=Physo140396;rank=3 scaffold_85 . exon 92708 93814 . - . ID=Physo140396.3;Parent=Physo140396;constitutive=1;rank=3 scaffold_85 . CDS 93982 94785 . - 0 ID=Physo140396;Parent=Physo140396;rank=2 scaffold_85 . exon 93982 94785 . - . ID=Physo140396.2;Parent=Physo140396;constitutive=1;rank=2 scaffold_85 . CDS 94951 95082 . - 0 ID=Physo140396;Parent=Physo140396;rank=1 scaffold_85 . exon 94951 95082 . - . ID=Physo140396.1;Parent=Physo140396;constitutive=1;rank=1 scaffold_85 . repeat_region 99751 99797 . ? . description=trf scaffold_85 . repeat_region 99827 102076 . + . description=GypsyPi-1c_I-int scaffold_85 . repeat_region 105960 105979 . ? . description=trf scaffold_85 . repeat_region 106680 106692 . ? . description=dust scaffold_85 . repeat_region 106727 106741 . ? . description=dust scaffold_85 . repeat_region 107122 107184 . ? . description=trf scaffold_85 ensembl protein_coding_gene 99372 102388 . + . ID=Physo140397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850023;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 99372 102388 . + . ID=Physo140397;Parent=Physo140397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 99372 99562 . + 0 ID=Physo140397;Parent=Physo140397;rank=1 scaffold_85 . exon 99372 99562 . + . ID=Physo140397.1;Parent=Physo140397;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 99593 99745 . + 0 ID=Physo140397;Parent=Physo140397;rank=2 scaffold_85 . exon 99593 99745 . + . ID=Physo140397.2;Parent=Physo140397;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_85 . CDS 99766 100072 . + 0 ID=Physo140397;Parent=Physo140397;rank=3 scaffold_85 . exon 99766 100072 . + . ID=Physo140397.3;Parent=Physo140397;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 100105 100140 . + 0 ID=Physo140397;Parent=Physo140397;rank=4 scaffold_85 . exon 100105 100140 . + . ID=Physo140397.4;Parent=Physo140397;constitutive=1;rank=4 scaffold_85 . CDS 100189 100439 . + 0 ID=Physo140397;Parent=Physo140397;rank=5 scaffold_85 . exon 100189 100439 . + . ID=Physo140397.5;Parent=Physo140397;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_85 . CDS 100598 101711 . + 0 ID=Physo140397;Parent=Physo140397;rank=6 scaffold_85 . exon 100598 101711 . + . ID=Physo140397.6;Parent=Physo140397;constitutive=1;ensembl_phase=2;rank=6 scaffold_85 . CDS 101905 102341 . + 0 ID=Physo140397;Parent=Physo140397;rank=7 scaffold_85 . exon 101905 102341 . + . ID=Physo140397.7;Parent=Physo140397;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_85 . CDS 102382 102388 . + 0 ID=Physo140397;Parent=Physo140397;rank=8 scaffold_85 . exon 102382 102388 . + . ID=Physo140397.8;Parent=Physo140397;constitutive=1;ensembl_phase=2;rank=8 scaffold_85 ensembl protein_coding_gene 102641 104155 . - . ID=Physo140398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850024;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 102641 104155 . - . ID=Physo140398;Parent=Physo140398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 102641 104155 . - 0 ID=Physo140398;Parent=Physo140398;rank=1 scaffold_85 . exon 102641 104155 . - . ID=Physo140398.1;Parent=Physo140398;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 106348 107273 . - . ID=Physo140399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850025;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 106348 107273 . - . ID=Physo140399;Parent=Physo140399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 106348 106693 . - 0 ID=Physo140399;Parent=Physo140399;rank=2 scaffold_85 . exon 106348 106693 . - . ID=Physo140399.2;Parent=Physo140399;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 106801 107273 . - 0 ID=Physo140399;Parent=Physo140399;rank=1 scaffold_85 . exon 106801 107273 . - . ID=Physo140399.1;Parent=Physo140399;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl tRNA_gene 115696 115776 . + . ID=EPrPSOG00000000208;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_85 ensembl transcript 115696 115776 . + . ID=EPrPSOT00000000208;Parent=EPrPSOG00000000208;biotype=tRNA;logic_name=ncrna_eg scaffold_85 . exon 115696 115776 . + . ID=EPrPSOE00000000208;Parent=EPrPSOT00000000208;constitutive=1;rank=1 scaffold_85 . repeat_region 118995 119038 . ? . description=trf scaffold_85 . repeat_region 120269 120313 . ? . description=trf scaffold_85 . repeat_region 122442 122468 . ? . description=trf scaffold_85 . repeat_region 122445 122484 . ? . description=dust scaffold_85 . repeat_region 122904 122956 . ? . description=dust scaffold_85 . repeat_region 122904 122956 . ? . description=trf scaffold_85 . repeat_region 123208 123230 . ? . description=dust scaffold_85 . repeat_region 124383 124411 . ? . description=dust scaffold_85 . repeat_region 125875 125885 . ? . description=dust scaffold_85 ensembl protein_coding_gene 126475 129642 . - . ID=Physo140400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850026;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 126475 129642 . - . ID=Physo140400;Parent=Physo140400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 126475 126548 . - 0 ID=Physo140400;Parent=Physo140400;rank=7 scaffold_85 . exon 126475 126548 . - . ID=Physo140400.7;Parent=Physo140400;constitutive=1;ensembl_phase=1;rank=7 scaffold_85 . CDS 126568 126944 . - 0 ID=Physo140400;Parent=Physo140400;rank=6 scaffold_85 . exon 126568 126944 . - . ID=Physo140400.6;Parent=Physo140400;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_85 . CDS 127054 127203 . - 0 ID=Physo140400;Parent=Physo140400;rank=5 scaffold_85 . CDS 127309 128022 . - 0 ID=Physo140400;Parent=Physo140400;rank=4 scaffold_85 . CDS 128103 128301 . - 0 ID=Physo140400;Parent=Physo140400;rank=3 scaffold_85 . CDS 128532 129456 . - 0 ID=Physo140400;Parent=Physo140400;rank=2 scaffold_85 . CDS 129637 129642 . - 0 ID=Physo140400;Parent=Physo140400;rank=1 scaffold_85 . biological_region 132074 132077 0.999 + . logic_name=eponine scaffold_85 . biological_region 132233 132236 0.999 - . logic_name=eponine scaffold_85 . biological_region 132762 132764 0.999 - . logic_name=eponine scaffold_85 . biological_region 133163 133168 0.999 - . logic_name=eponine scaffold_85 . biological_region 133218 133222 0.999 + . logic_name=eponine scaffold_85 . biological_region 133239 133244 0.999 + . logic_name=eponine scaffold_85 . biological_region 133254 133257 0.999 - . logic_name=eponine scaffold_85 . biological_region 135990 135994 0.999 - . logic_name=eponine scaffold_85 . biological_region 136353 136361 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 134850 138554 . + . ID=Physo109290;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_850002;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 134850 138554 . + . ID=Physo109290;Parent=Physo109290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 134850 138554 . + 0 ID=Physo109290;Parent=Physo109290;rank=1 scaffold_85 . exon 134850 138554 . + . ID=Physo109290.1;Parent=Physo109290;constitutive=1;rank=1 scaffold_85 . exon 127054 127203 . - . ID=Physo140400.5;Parent=Physo140400;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_85 . exon 127309 128022 . - . ID=Physo140400.4;Parent=Physo140400;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_85 . exon 128103 128301 . - . ID=Physo140400.3;Parent=Physo140400;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_85 . exon 128532 129456 . - . ID=Physo140400.2;Parent=Physo140400;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_85 . exon 129637 129642 . - . ID=Physo140400.1;Parent=Physo140400;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 130453 133502 . - . ID=Physo140401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850027;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 130453 133502 . - . ID=Physo140401;Parent=Physo140401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 130453 131724 . - 0 ID=Physo140401;Parent=Physo140401;rank=2 scaffold_85 . exon 130453 131724 . - . ID=Physo140401.2;Parent=Physo140401;constitutive=1;rank=2 scaffold_85 . CDS 131811 133502 . - 0 ID=Physo140401;Parent=Physo140401;rank=1 scaffold_85 . exon 131811 133502 . - . ID=Physo140401.1;Parent=Physo140401;constitutive=1;rank=1 scaffold_85 . repeat_region 139259 139266 . ? . description=dust scaffold_85 . repeat_region 140687 140743 . ? . description=dust scaffold_85 . repeat_region 141054 141128 . ? . description=trf scaffold_85 . repeat_region 144344 144365 . ? . description=trf scaffold_85 ensembl protein_coding_gene 143898 146277 . - . ID=Physo109291;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_850003;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 143898 146277 . - . ID=Physo109291;Parent=Physo109291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 143898 146277 . - . ID=Physo109291.1;Parent=Physo109291;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_85 . CDS 143996 146053 . - 0 ID=Physo109291;Parent=Physo109291;rank=1 scaffold_85 ensembl protein_coding_gene 139429 141129 . - . ID=Physo140403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850029;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 139429 141129 . - . ID=Physo140403;Parent=Physo140403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 139429 139696 . - . ID=Physo140403.4;Parent=Physo140403;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_85 . CDS 139664 139696 . - 0 ID=Physo140403;Parent=Physo140403;rank=4 scaffold_85 . CDS 139768 140344 . - 0 ID=Physo140403;Parent=Physo140403;rank=3 scaffold_85 . exon 139768 140344 . - . ID=Physo140403.3;Parent=Physo140403;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 140422 140912 . - 0 ID=Physo140403;Parent=Physo140403;rank=2 scaffold_85 . exon 140422 140912 . - . ID=Physo140403.2;Parent=Physo140403;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_85 . CDS 141001 141129 . - 0 ID=Physo140403;Parent=Physo140403;rank=1 scaffold_85 . exon 141001 141129 . - . ID=Physo140403.1;Parent=Physo140403;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 142497 143739 . + . ID=Physo140404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850030;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 142497 143739 . + . ID=Physo140404;Parent=Physo140404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 142497 143579 . + 0 ID=Physo140404;Parent=Physo140404;rank=1 scaffold_85 . exon 142497 143579 . + . ID=Physo140404.1;Parent=Physo140404;constitutive=1;rank=1 scaffold_85 . CDS 143653 143739 . + 0 ID=Physo140404;Parent=Physo140404;rank=2 scaffold_85 . exon 143653 143739 . + . ID=Physo140404.2;Parent=Physo140404;constitutive=1;rank=2 scaffold_85 . biological_region 146210 146211 0.999 - . logic_name=eponine scaffold_85 . biological_region 146258 146269 0.999 - . logic_name=eponine scaffold_85 . biological_region 146671 146671 0.999 + . logic_name=eponine scaffold_85 . biological_region 151110 151114 0.999 + . logic_name=eponine scaffold_85 . biological_region 151308 151311 0.999 + . logic_name=eponine scaffold_85 . biological_region 151853 151854 0.999 + . logic_name=eponine scaffold_85 . biological_region 152046 152047 0.999 - . logic_name=eponine scaffold_85 ensembl protein_coding_gene 148064 148890 . - . ID=Physo109292;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_850004;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 148064 148890 . - . ID=Physo109292;Parent=Physo109292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 148064 148228 . - 0 ID=Physo109292;Parent=Physo109292;rank=4 scaffold_85 . exon 148064 148228 . - . ID=Physo109292.4;Parent=Physo109292;constitutive=1;rank=4 scaffold_85 . CDS 148294 148459 . - 0 ID=Physo109292;Parent=Physo109292;rank=3 scaffold_85 . exon 148294 148459 . - . ID=Physo109292.3;Parent=Physo109292;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 148549 148776 . - 0 ID=Physo109292;Parent=Physo109292;rank=2 scaffold_85 . exon 148549 148776 . - . ID=Physo109292.2;Parent=Physo109292;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_85 . CDS 148862 148890 . - 0 ID=Physo109292;Parent=Physo109292;rank=1 scaffold_85 . exon 148862 148890 . - . ID=Physo109292.1;Parent=Physo109292;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 146500 147821 . - . ID=Physo140406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850032;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 146500 147821 . - . ID=Physo140406;Parent=Physo140406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 146500 146961 . - 0 ID=Physo140406;Parent=Physo140406;rank=5 scaffold_85 . exon 146500 146961 . - . ID=Physo140406.5;Parent=Physo140406;constitutive=1;rank=5 scaffold_85 . CDS 147028 147144 . - 0 ID=Physo140406;Parent=Physo140406;rank=4 scaffold_85 . exon 147028 147144 . - . ID=Physo140406.4;Parent=Physo140406;constitutive=1;rank=4 scaffold_85 . CDS 147230 147363 . - 0 ID=Physo140406;Parent=Physo140406;rank=3 scaffold_85 . exon 147230 147363 . - . ID=Physo140406.3;Parent=Physo140406;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 . CDS 147438 147584 . - 0 ID=Physo140406;Parent=Physo140406;rank=2 scaffold_85 . exon 147438 147584 . - . ID=Physo140406.2;Parent=Physo140406;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 147659 147821 . - 0 ID=Physo140406;Parent=Physo140406;rank=1 scaffold_85 . exon 147659 147821 . - . ID=Physo140406.1;Parent=Physo140406;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 149299 151932 . - . ID=Physo140408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850034;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 149299 151932 . - . ID=Physo140408;Parent=Physo140408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 149299 149324 . - 0 ID=Physo140408;Parent=Physo140408;rank=5 scaffold_85 . exon 149299 149324 . - . ID=Physo140408.5;Parent=Physo140408;constitutive=1;ensembl_phase=1;rank=5 scaffold_85 . CDS 149410 149514 . - 0 ID=Physo140408;Parent=Physo140408;rank=4 scaffold_85 . exon 149410 149514 . - . ID=Physo140408.4;Parent=Physo140408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 149643 149762 . - 0 ID=Physo140408;Parent=Physo140408;rank=3 scaffold_85 . exon 149643 149762 . - . ID=Physo140408.3;Parent=Physo140408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_85 . CDS 149895 150040 . - 0 ID=Physo140408;Parent=Physo140408;rank=2 scaffold_85 . exon 149895 150040 . - . ID=Physo140408.2;Parent=Physo140408;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 150167 151932 . - 0 ID=Physo140408;Parent=Physo140408;rank=1 scaffold_85 . exon 150167 151932 . - . ID=Physo140408.1;Parent=Physo140408;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 152470 153222 . + . ID=Physo140409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850035;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 152470 153222 . + . ID=Physo140409;Parent=Physo140409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 152470 153222 . + 0 ID=Physo140409;Parent=Physo140409;rank=1 scaffold_85 . exon 152470 153222 . + . ID=Physo140409.1;Parent=Physo140409;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 153385 154875 . + . ID=Physo140410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850036;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 153385 154875 . + . ID=Physo140410;Parent=Physo140410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 153385 154875 . + 0 ID=Physo140410;Parent=Physo140410;rank=1 scaffold_85 . exon 153385 154875 . + . ID=Physo140410.1;Parent=Physo140410;constitutive=1;rank=1 scaffold_85 . repeat_region 160579 160595 . ? . description=dust scaffold_85 . repeat_region 162451 162458 . ? . description=dust scaffold_85 ensembl protein_coding_gene 159425 160568 . - . ID=Physo140411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850037;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 159425 160568 . - . ID=Physo140411;Parent=Physo140411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 159425 159449 . - 0 ID=Physo140411;Parent=Physo140411;rank=2 scaffold_85 . exon 159425 159449 . - . ID=Physo140411.2;Parent=Physo140411;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 159709 160568 . - 0 ID=Physo140411;Parent=Physo140411;rank=1 scaffold_85 . exon 159709 160568 . - . ID=Physo140411.1;Parent=Physo140411;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 162712 163797 . + . ID=Physo158135;biotype=protein_coding;external_name=C_scaffold_85000001;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 162712 163797 . + . ID=Physo158135;Parent=Physo158135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 162712 162977 . + . ID=Physo158135.1;Parent=Physo158135;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_85 . CDS 162713 162977 . + 0 ID=Physo158135;Parent=Physo158135;rank=1 scaffold_85 . CDS 163240 163499 . + 0 ID=Physo158135;Parent=Physo158135;rank=2 scaffold_85 . exon 163240 163499 . + . ID=Physo158135.2;Parent=Physo158135;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 163578 163730 . + 0 ID=Physo158135;Parent=Physo158135;rank=3 scaffold_85 . exon 163578 163730 . + . ID=Physo158135.3;Parent=Physo158135;constitutive=1;rank=3 scaffold_85 . CDS 163786 163797 . + 0 ID=Physo158135;Parent=Physo158135;rank=4 scaffold_85 . exon 163786 163797 . + . ID=Physo158135.4;Parent=Physo158135;constitutive=1;rank=4 scaffold_85 ensembl protein_coding_gene 164579 167230 . - . ID=Physo158136;biotype=protein_coding;external_name=C_scaffold_85000002;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 164579 167230 . - . ID=Physo158136;Parent=Physo158136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 164579 165189 . - 0 ID=Physo158136;Parent=Physo158136;rank=6 scaffold_85 . exon 164579 165189 . - . ID=Physo158136.6;Parent=Physo158136;constitutive=1;ensembl_phase=1;rank=6 scaffold_85 . CDS 165223 165812 . - 0 ID=Physo158136;Parent=Physo158136;rank=5 scaffold_85 . exon 165223 165812 . - . ID=Physo158136.5;Parent=Physo158136;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_85 . CDS 165879 166243 . - 0 ID=Physo158136;Parent=Physo158136;rank=4 scaffold_85 . CDS 166292 166960 . - 0 ID=Physo158136;Parent=Physo158136;rank=3 scaffold_85 . CDS 167024 167066 . - 0 ID=Physo158136;Parent=Physo158136;rank=2 scaffold_85 . CDS 167151 167230 . - 0 ID=Physo158136;Parent=Physo158136;rank=1 scaffold_85 . biological_region 167674 167676 0.999 + . logic_name=eponine scaffold_85 . biological_region 168640 168646 0.999 - . logic_name=eponine scaffold_85 . repeat_region 168747 168786 . ? . description=trf scaffold_85 . biological_region 172809 172814 0.999 + . logic_name=eponine scaffold_85 . biological_region 173107 173108 0.999 + . logic_name=eponine scaffold_85 . biological_region 173204 173205 0.999 + . logic_name=eponine scaffold_85 . repeat_region 173207 173269 . ? . description=trf scaffold_85 . repeat_region 173226 173265 . ? . description=trf scaffold_85 . repeat_region 173282 173317 . ? . description=trf scaffold_85 . biological_region 173517 173518 0.999 + . logic_name=eponine scaffold_85 . biological_region 174697 174699 0.999 - . logic_name=eponine scaffold_85 . biological_region 175205 175207 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 167998 169164 . - . ID=Physo140413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850039;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 167998 169164 . - . ID=Physo140413;Parent=Physo140413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 167998 169164 . - 0 ID=Physo140413;Parent=Physo140413;rank=1 scaffold_85 . exon 167998 169164 . - . ID=Physo140413.1;Parent=Physo140413;constitutive=1;rank=1 scaffold_85 . exon 165879 166243 . - . ID=Physo158136.4;Parent=Physo158136;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_85 . exon 166292 166960 . - . ID=Physo158136.3;Parent=Physo158136;constitutive=1;rank=3 scaffold_85 . exon 167024 167066 . - . ID=Physo158136.2;Parent=Physo158136;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . exon 167151 167230 . - . ID=Physo158136.1;Parent=Physo158136;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 170207 172040 . + . ID=Physo158137;biotype=protein_coding;external_name=C_scaffold_85000003;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 170207 172040 . + . ID=Physo158137;Parent=Physo158137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 170207 170459 . + 0 ID=Physo158137;Parent=Physo158137;rank=1 scaffold_85 . exon 170207 170459 . + . ID=Physo158137.1;Parent=Physo158137;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . CDS 170527 170724 . + 0 ID=Physo158137;Parent=Physo158137;rank=2 scaffold_85 . exon 170527 170724 . + . ID=Physo158137.2;Parent=Physo158137;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 170805 170857 . + 0 ID=Physo158137;Parent=Physo158137;rank=3 scaffold_85 . exon 170805 170857 . + . ID=Physo158137.3;Parent=Physo158137;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 . CDS 170969 171093 . + 0 ID=Physo158137;Parent=Physo158137;rank=4 scaffold_85 . exon 170969 171093 . + . ID=Physo158137.4;Parent=Physo158137;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_85 . CDS 171115 171516 . + 0 ID=Physo158137;Parent=Physo158137;rank=5 scaffold_85 . exon 171115 171516 . + . ID=Physo158137.5;Parent=Physo158137;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_85 . CDS 171590 171761 . + 0 ID=Physo158137;Parent=Physo158137;rank=6 scaffold_85 . exon 171590 171761 . + . ID=Physo158137.6;Parent=Physo158137;constitutive=1;ensembl_phase=2;rank=6 scaffold_85 . CDS 171786 172040 . + 0 ID=Physo158137;Parent=Physo158137;rank=7 scaffold_85 . exon 171786 172040 . + . ID=Physo158137.7;Parent=Physo158137;constitutive=1;rank=7 scaffold_85 ensembl protein_coding_gene 172422 173436 . - . ID=Physo158138;biotype=protein_coding;external_name=C_scaffold_85000004;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 172422 173436 . - . ID=Physo158138;Parent=Physo158138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 172422 172669 . - 0 ID=Physo158138;Parent=Physo158138;rank=3 scaffold_85 . exon 172422 172669 . - . ID=Physo158138.3;Parent=Physo158138;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 . CDS 172758 173199 . - 0 ID=Physo158138;Parent=Physo158138;rank=2 scaffold_85 . exon 172758 173199 . - . ID=Physo158138.2;Parent=Physo158138;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_85 . CDS 173227 173436 . - 0 ID=Physo158138;Parent=Physo158138;rank=1 scaffold_85 . exon 173227 173436 . - . ID=Physo158138.1;Parent=Physo158138;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 173837 176322 . + . ID=Physo158140;biotype=protein_coding;external_name=C_scaffold_85000006;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 173837 176322 . + . ID=Physo158140;Parent=Physo158140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 173837 174117 . + 0 ID=Physo158140;Parent=Physo158140;rank=1 scaffold_85 . exon 173837 174117 . + . ID=Physo158140.1;Parent=Physo158140;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 174198 174227 . + 0 ID=Physo158140;Parent=Physo158140;rank=2 scaffold_85 . exon 174198 174227 . + . ID=Physo158140.2;Parent=Physo158140;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_85 . CDS 174310 174408 . + 0 ID=Physo158140;Parent=Physo158140;rank=3 scaffold_85 . exon 174310 174408 . + . ID=Physo158140.3;Parent=Physo158140;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_85 . CDS 174485 174972 . + 0 ID=Physo158140;Parent=Physo158140;rank=4 scaffold_85 . exon 174485 174972 . + . ID=Physo158140.4;Parent=Physo158140;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_85 . CDS 175129 175351 . + 0 ID=Physo158140;Parent=Physo158140;rank=5 scaffold_85 . exon 175129 175351 . + . ID=Physo158140.5;Parent=Physo158140;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_85 . CDS 175428 175640 . + 0 ID=Physo158140;Parent=Physo158140;rank=6 scaffold_85 . exon 175428 175640 . + . ID=Physo158140.6;Parent=Physo158140;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_85 . CDS 175719 175980 . + 0 ID=Physo158140;Parent=Physo158140;rank=7 scaffold_85 . CDS 176059 176322 . + 0 ID=Physo158140;Parent=Physo158140;rank=8 scaffold_85 ensembl protein_coding_gene 184157 185574 . + . ID=Physo121018;biotype=protein_coding;external_name=estExt_Genewise1.C_850048;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 184157 185574 . + . ID=Physo121018;Parent=Physo121018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 184157 184256 . + . ID=Physo121018.1;Parent=Physo121018;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_85 . exon 184327 184500 . + . ID=Physo121018.2;Parent=Physo121018;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_85 . exon 184568 184698 . + . ID=Physo121018.3;Parent=Physo121018;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_85 . exon 184776 185172 . + . ID=Physo121018.4;Parent=Physo121018;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=4 scaffold_85 . CDS 185139 185172 . + 0 ID=Physo121018;Parent=Physo121018;rank=1 scaffold_85 . CDS 185199 185572 . + 0 ID=Physo121018;Parent=Physo121018;rank=2 scaffold_85 ensembl protein_coding_gene 179829 182484 . - . ID=Physo140418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850044;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 179829 182484 . - . ID=Physo140418;Parent=Physo140418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 179829 179894 . - 0 ID=Physo140418;Parent=Physo140418;rank=4 scaffold_85 . exon 179829 179894 . - . ID=Physo140418.4;Parent=Physo140418;constitutive=1;rank=4 scaffold_85 . CDS 179969 180295 . - 0 ID=Physo140418;Parent=Physo140418;rank=3 scaffold_85 . exon 179969 180295 . - . ID=Physo140418.3;Parent=Physo140418;constitutive=1;rank=3 scaffold_85 . CDS 180370 180467 . - 0 ID=Physo140418;Parent=Physo140418;rank=2 scaffold_85 . exon 180370 180467 . - . ID=Physo140418.2;Parent=Physo140418;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 180621 182484 . - 0 ID=Physo140418;Parent=Physo140418;rank=1 scaffold_85 . exon 180621 182484 . - . ID=Physo140418.1;Parent=Physo140418;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 182898 183668 . - . ID=Physo140419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850045;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 182898 183668 . - . ID=Physo140419;Parent=Physo140419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 182898 183668 . - 0 ID=Physo140419;Parent=Physo140419;rank=1 scaffold_85 . exon 182898 183668 . - . ID=Physo140419.1;Parent=Physo140419;constitutive=1;rank=1 scaffold_85 . exon 175719 175980 . + . ID=Physo158140.7;Parent=Physo158140;constitutive=1;ensembl_phase=2;rank=7 scaffold_85 . exon 176059 176322 . + . ID=Physo158140.8;Parent=Physo158140;constitutive=1;rank=8 scaffold_85 . biological_region 185241 185243 0.999 - . logic_name=eponine scaffold_85 . biological_region 185336 185337 0.999 - . logic_name=eponine scaffold_85 . biological_region 187177 187182 0.999 + . logic_name=eponine scaffold_85 . biological_region 187218 187220 0.999 - . logic_name=eponine scaffold_85 . repeat_region 187788 187803 . ? . description=dust scaffold_85 . biological_region 189860 189863 0.999 - . logic_name=eponine scaffold_85 . biological_region 189915 189917 0.999 + . logic_name=eponine scaffold_85 . biological_region 193553 193556 0.999 + . logic_name=eponine scaffold_85 . exon 185199 185574 . + . ID=Physo121018.5;Parent=Physo121018;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_85 ensembl protein_coding_gene 185611 187900 . - . ID=Physo140420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850046;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 185611 187900 . - . ID=Physo140420;Parent=Physo140420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 185611 187756 . - . ID=Physo140420.2;Parent=Physo140420;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_85 . CDS 185731 187756 . - 0 ID=Physo140420;Parent=Physo140420;rank=2 scaffold_85 . CDS 187848 187900 . - 0 ID=Physo140420;Parent=Physo140420;rank=1 scaffold_85 . exon 187848 187900 . - . ID=Physo140420.1;Parent=Physo140420;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 189259 192660 . + . ID=Physo140421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850047;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 189259 192660 . + . ID=Physo140421;Parent=Physo140421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 189259 189273 . + 0 ID=Physo140421;Parent=Physo140421;rank=1 scaffold_85 . exon 189259 189273 . + . ID=Physo140421.1;Parent=Physo140421;constitutive=1;rank=1 scaffold_85 . CDS 189593 190183 . + 0 ID=Physo140421;Parent=Physo140421;rank=2 scaffold_85 . exon 189593 190183 . + . ID=Physo140421.2;Parent=Physo140421;constitutive=1;rank=2 scaffold_85 . CDS 190243 192300 . + 0 ID=Physo140421;Parent=Physo140421;rank=3 scaffold_85 . exon 190243 192300 . + . ID=Physo140421.3;Parent=Physo140421;constitutive=1;rank=3 scaffold_85 . CDS 192357 192515 . + 0 ID=Physo140421;Parent=Physo140421;rank=4 scaffold_85 . exon 192357 192515 . + . ID=Physo140421.4;Parent=Physo140421;constitutive=1;rank=4 scaffold_85 . CDS 192544 192660 . + 0 ID=Physo140421;Parent=Physo140421;rank=5 scaffold_85 . exon 192544 192660 . + . ID=Physo140421.5;Parent=Physo140421;constitutive=1;rank=5 scaffold_85 ensembl protein_coding_gene 193745 196888 . + . ID=Physo140422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850048;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 193745 196888 . + . ID=Physo140422;Parent=Physo140422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 193745 196888 . + 0 ID=Physo140422;Parent=Physo140422;rank=1 scaffold_85 . exon 193745 196888 . + . ID=Physo140422.1;Parent=Physo140422;constitutive=1;rank=1 scaffold_85 . repeat_region 203127 203224 . ? . description=trf scaffold_85 . repeat_region 203190 203244 . ? . description=trf scaffold_85 . repeat_region 203224 203279 . ? . description=trf scaffold_85 ensembl protein_coding_gene 197283 200983 . + . ID=Physo140423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850049;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 197283 200983 . + . ID=Physo140423;Parent=Physo140423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 197283 197806 . + 0 ID=Physo140423;Parent=Physo140423;rank=1 scaffold_85 . exon 197283 197806 . + . ID=Physo140423.1;Parent=Physo140423;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . CDS 197860 197930 . + 0 ID=Physo140423;Parent=Physo140423;rank=2 scaffold_85 . exon 197860 197930 . + . ID=Physo140423.2;Parent=Physo140423;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 198003 198140 . + 0 ID=Physo140423;Parent=Physo140423;rank=3 scaffold_85 . exon 198003 198140 . + . ID=Physo140423.3;Parent=Physo140423;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_85 . CDS 198278 199144 . + 0 ID=Physo140423;Parent=Physo140423;rank=4 scaffold_85 . exon 198278 199144 . + . ID=Physo140423.4;Parent=Physo140423;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 199364 200838 . + 0 ID=Physo140423;Parent=Physo140423;rank=5 scaffold_85 . exon 199364 200838 . + . ID=Physo140423.5;Parent=Physo140423;constitutive=1;ensembl_phase=1;rank=5 scaffold_85 . CDS 200867 200983 . + 0 ID=Physo140423;Parent=Physo140423;rank=6 scaffold_85 . exon 200867 200983 . + . ID=Physo140423.6;Parent=Physo140423;constitutive=1;rank=6 scaffold_85 . biological_region 205133 205135 0.999 + . logic_name=eponine scaffold_85 . repeat_region 207702 207751 . ? . description=dust scaffold_85 . repeat_region 208838 208846 . ? . description=dust scaffold_85 . biological_region 211611 211616 0.999 + . logic_name=eponine scaffold_85 . repeat_region 212153 213227 . + . description=GypsyPi-1c_I-int scaffold_85 . biological_region 213182 213183 0.999 + . logic_name=eponine scaffold_85 . biological_region 214048 214052 0.999 + . logic_name=eponine scaffold_85 . biological_region 214069 214073 0.999 + . logic_name=eponine scaffold_85 . biological_region 214144 214148 0.999 - . logic_name=eponine scaffold_85 ensembl protein_coding_gene 210526 213530 . + . ID=Physo140424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850050;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 210526 213530 . + . ID=Physo140424;Parent=Physo140424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 210526 212862 . + 0 ID=Physo140424;Parent=Physo140424;rank=1 scaffold_85 . exon 210526 212862 . + . ID=Physo140424.1;Parent=Physo140424;constitutive=1;rank=1 scaffold_85 . CDS 212954 213454 . + 0 ID=Physo140424;Parent=Physo140424;rank=2 scaffold_85 . exon 212954 213454 . + . ID=Physo140424.2;Parent=Physo140424;constitutive=1;rank=2 scaffold_85 . CDS 213513 213530 . + 0 ID=Physo140424;Parent=Physo140424;rank=3 scaffold_85 . exon 213513 213530 . + . ID=Physo140424.3;Parent=Physo140424;constitutive=1;rank=3 scaffold_85 . repeat_region 217416 217695 . ? . description=trf scaffold_85 . repeat_region 219439 219494 . ? . description=trf scaffold_85 . repeat_region 223539 223563 . ? . description=trf scaffold_85 ensembl protein_coding_gene 215997 218076 . - . ID=Physo140425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850051;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 215997 218076 . - . ID=Physo140425;Parent=Physo140425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 215997 216566 . - 0 ID=Physo140425;Parent=Physo140425;rank=2 scaffold_85 . exon 215997 216566 . - . ID=Physo140425.2;Parent=Physo140425;constitutive=1;rank=2 scaffold_85 . CDS 216658 218076 . - 0 ID=Physo140425;Parent=Physo140425;rank=1 scaffold_85 . exon 216658 218076 . - . ID=Physo140425.1;Parent=Physo140425;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 220055 220868 . - . ID=Physo140426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850052;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 220055 220868 . - . ID=Physo140426;Parent=Physo140426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 220055 220064 . - 0 ID=Physo140426;Parent=Physo140426;rank=2 scaffold_85 . exon 220055 220064 . - . ID=Physo140426.2;Parent=Physo140426;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 220243 220868 . - 0 ID=Physo140426;Parent=Physo140426;rank=1 scaffold_85 . exon 220243 220868 . - . ID=Physo140426.1;Parent=Physo140426;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . biological_region 224751 224751 0.999 + . logic_name=eponine scaffold_85 . biological_region 226442 226443 0.999 + . logic_name=eponine scaffold_85 . biological_region 232639 232639 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 224525 226648 . + . ID=Physo140427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850053;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 224525 226648 . + . ID=Physo140427;Parent=Physo140427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 224525 226648 . + 0 ID=Physo140427;Parent=Physo140427;rank=1 scaffold_85 . exon 224525 226648 . + . ID=Physo140427.1;Parent=Physo140427;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 228073 229386 . - . ID=Physo140428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850054;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 228073 229386 . - . ID=Physo140428;Parent=Physo140428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 228073 228150 . - 0 ID=Physo140428;Parent=Physo140428;rank=4 scaffold_85 . exon 228073 228150 . - . ID=Physo140428.4;Parent=Physo140428;constitutive=1;rank=4 scaffold_85 . CDS 228210 228873 . - 0 ID=Physo140428;Parent=Physo140428;rank=3 scaffold_85 . exon 228210 228873 . - . ID=Physo140428.3;Parent=Physo140428;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 229088 229304 . - 0 ID=Physo140428;Parent=Physo140428;rank=2 scaffold_85 . exon 229088 229304 . - . ID=Physo140428.2;Parent=Physo140428;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_85 . CDS 229377 229386 . - 0 ID=Physo140428;Parent=Physo140428;rank=1 scaffold_85 . exon 229377 229386 . - . ID=Physo140428.1;Parent=Physo140428;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 231889 232965 . - . ID=Physo140429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850055;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 231889 232965 . - . ID=Physo140429;Parent=Physo140429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 231889 232965 . - 0 ID=Physo140429;Parent=Physo140429;rank=1 scaffold_85 . exon 231889 232965 . - . ID=Physo140429.1;Parent=Physo140429;constitutive=1;rank=1 scaffold_85 . repeat_region 234005 234014 . ? . description=dust scaffold_85 ensembl protein_coding_gene 234041 235642 . - . ID=Physo140430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850056;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 234041 235642 . - . ID=Physo140430;Parent=Physo140430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 234041 235642 . - 0 ID=Physo140430;Parent=Physo140430;rank=1 scaffold_85 . exon 234041 235642 . - . ID=Physo140430.1;Parent=Physo140430;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 237397 239283 . + . ID=Physo140431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850057;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 237397 239283 . + . ID=Physo140431;Parent=Physo140431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 237397 239283 . + 0 ID=Physo140431;Parent=Physo140431;rank=1 scaffold_85 . exon 237397 239283 . + . ID=Physo140431.1;Parent=Physo140431;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 239766 242058 . - . ID=Physo140432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850058;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 239766 242058 . - . ID=Physo140432;Parent=Physo140432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 239766 241223 . - 0 ID=Physo140432;Parent=Physo140432;rank=3 scaffold_85 . exon 239766 241223 . - . ID=Physo140432.3;Parent=Physo140432;constitutive=1;rank=3 scaffold_85 . CDS 241297 241829 . - 0 ID=Physo140432;Parent=Physo140432;rank=2 scaffold_85 . exon 241297 241829 . - . ID=Physo140432.2;Parent=Physo140432;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 241908 242058 . - 0 ID=Physo140432;Parent=Physo140432;rank=1 scaffold_85 . exon 241908 242058 . - . ID=Physo140432.1;Parent=Physo140432;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 242286 246547 . + . ID=Physo140433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850059;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 242286 246547 . + . ID=Physo140433;Parent=Physo140433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 242286 242393 . + 0 ID=Physo140433;Parent=Physo140433;rank=1 scaffold_85 . exon 242286 242393 . + . ID=Physo140433.1;Parent=Physo140433;constitutive=1;rank=1 scaffold_85 . CDS 242485 242597 . + 0 ID=Physo140433;Parent=Physo140433;rank=2 scaffold_85 . exon 242485 242597 . + . ID=Physo140433.2;Parent=Physo140433;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_85 . CDS 242689 242734 . + 0 ID=Physo140433;Parent=Physo140433;rank=3 scaffold_85 . exon 242689 242734 . + . ID=Physo140433.3;Parent=Physo140433;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 242816 242974 . + 0 ID=Physo140433;Parent=Physo140433;rank=4 scaffold_85 . exon 242816 242974 . + . ID=Physo140433.4;Parent=Physo140433;constitutive=1;rank=4 scaffold_85 . CDS 243056 243144 . + 0 ID=Physo140433;Parent=Physo140433;rank=5 scaffold_85 . exon 243056 243144 . + . ID=Physo140433.5;Parent=Physo140433;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_85 . CDS 243213 243339 . + 0 ID=Physo140433;Parent=Physo140433;rank=6 scaffold_85 . exon 243213 243339 . + . ID=Physo140433.6;Parent=Physo140433;constitutive=1;ensembl_phase=2;rank=6 scaffold_85 . CDS 243413 243612 . + 0 ID=Physo140433;Parent=Physo140433;rank=7 scaffold_85 . exon 243413 243612 . + . ID=Physo140433.7;Parent=Physo140433;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_85 . CDS 243699 244084 . + 0 ID=Physo140433;Parent=Physo140433;rank=8 scaffold_85 . CDS 244549 245750 . + 0 ID=Physo140433;Parent=Physo140433;rank=9 scaffold_85 . CDS 245820 245910 . + 0 ID=Physo140433;Parent=Physo140433;rank=10 scaffold_85 . CDS 245983 246125 . + 0 ID=Physo140433;Parent=Physo140433;rank=11 scaffold_85 . CDS 246203 246261 . + 0 ID=Physo140433;Parent=Physo140433;rank=12 scaffold_85 . CDS 246343 246547 . + 0 ID=Physo140433;Parent=Physo140433;rank=13 scaffold_85 . biological_region 246461 246464 0.999 - . logic_name=eponine scaffold_85 . repeat_region 246783 246974 . + . description=Polinton-1_PI scaffold_85 . biological_region 248444 248448 0.999 + . logic_name=eponine scaffold_85 . repeat_region 251761 252146 . - . description=Gypsy-2-I_PI-int scaffold_85 . biological_region 252778 252781 0.999 - . logic_name=eponine scaffold_85 . exon 243699 244084 . + . ID=Physo140433.8;Parent=Physo140433;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_85 . exon 244549 245750 . + . ID=Physo140433.9;Parent=Physo140433;constitutive=1;ensembl_phase=1;rank=9 scaffold_85 . exon 245820 245910 . + . ID=Physo140433.10;Parent=Physo140433;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_85 . exon 245983 246125 . + . ID=Physo140433.11;Parent=Physo140433;constitutive=1;ensembl_phase=1;rank=11 scaffold_85 . exon 246203 246261 . + . ID=Physo140433.12;Parent=Physo140433;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_85 . exon 246343 246547 . + . ID=Physo140433.13;Parent=Physo140433;constitutive=1;ensembl_phase=2;rank=13 scaffold_85 ensembl protein_coding_gene 246806 248511 . + . ID=Physo140434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850060;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 246806 248511 . + . ID=Physo140434;Parent=Physo140434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 246806 247373 . + . ID=Physo140434.1;Parent=Physo140434;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_85 . CDS 246812 247373 . + 0 ID=Physo140434;Parent=Physo140434;rank=1 scaffold_85 . CDS 247533 247689 . + 0 ID=Physo140434;Parent=Physo140434;rank=2 scaffold_85 . exon 247533 247689 . + . ID=Physo140434.2;Parent=Physo140434;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_85 . CDS 247789 248224 . + 0 ID=Physo140434;Parent=Physo140434;rank=3 scaffold_85 . exon 247789 248224 . + . ID=Physo140434.3;Parent=Physo140434;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 248290 248511 . + 0 ID=Physo140434;Parent=Physo140434;rank=4 scaffold_85 . exon 248290 248511 . + . ID=Physo140434.4;Parent=Physo140434;constitutive=1;rank=4 scaffold_85 ensembl protein_coding_gene 249806 250672 . + . ID=Physo140435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850061;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 249806 250672 . + . ID=Physo140435;Parent=Physo140435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 249806 250672 . + 0 ID=Physo140435;Parent=Physo140435;rank=1 scaffold_85 . exon 249806 250672 . + . ID=Physo140435.1;Parent=Physo140435;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 251016 255854 . - . ID=Physo140436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850062;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 251016 255854 . - . ID=Physo140436;Parent=Physo140436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 251016 252088 . - 0 ID=Physo140436;Parent=Physo140436;rank=5 scaffold_85 . exon 251016 252088 . - . ID=Physo140436.5;Parent=Physo140436;constitutive=1;ensembl_phase=1;rank=5 scaffold_85 . CDS 252215 254368 . - 0 ID=Physo140436;Parent=Physo140436;rank=4 scaffold_85 . exon 252215 254368 . - . ID=Physo140436.4;Parent=Physo140436;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 254790 255181 . - 0 ID=Physo140436;Parent=Physo140436;rank=3 scaffold_85 . CDS 255362 255578 . - 0 ID=Physo140436;Parent=Physo140436;rank=2 scaffold_85 . CDS 255668 255854 . - 0 ID=Physo140436;Parent=Physo140436;rank=1 scaffold_85 . repeat_region 256533 256579 . ? . description=trf scaffold_85 . repeat_region 259815 259822 . ? . description=dust scaffold_85 . exon 254790 255181 . - . ID=Physo140436.3;Parent=Physo140436;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_85 . exon 255362 255578 . - . ID=Physo140436.2;Parent=Physo140436;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_85 . exon 255668 255854 . - . ID=Physo140436.1;Parent=Physo140436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 256919 258258 . + . ID=Physo140437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850063;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 256919 258258 . + . ID=Physo140437;Parent=Physo140437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 256919 257107 . + 0 ID=Physo140437;Parent=Physo140437;rank=1 scaffold_85 . exon 256919 257107 . + . ID=Physo140437.1;Parent=Physo140437;constitutive=1;rank=1 scaffold_85 . CDS 257147 257782 . + 0 ID=Physo140437;Parent=Physo140437;rank=2 scaffold_85 . exon 257147 257782 . + . ID=Physo140437.2;Parent=Physo140437;constitutive=1;rank=2 scaffold_85 . CDS 257812 258258 . + 0 ID=Physo140437;Parent=Physo140437;rank=3 scaffold_85 . exon 257812 258258 . + . ID=Physo140437.3;Parent=Physo140437;constitutive=1;rank=3 scaffold_85 ensembl protein_coding_gene 262895 266034 . + . ID=Physo140438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850064;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 262895 266034 . + . ID=Physo140438;Parent=Physo140438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 262895 262966 . + 0 ID=Physo140438;Parent=Physo140438;rank=1 scaffold_85 . exon 262895 262966 . + . ID=Physo140438.1;Parent=Physo140438;constitutive=1;rank=1 scaffold_85 . CDS 263097 265451 . + 0 ID=Physo140438;Parent=Physo140438;rank=2 scaffold_85 . exon 263097 265451 . + . ID=Physo140438.2;Parent=Physo140438;constitutive=1;rank=2 scaffold_85 . CDS 265615 266034 . + 0 ID=Physo140438;Parent=Physo140438;rank=3 scaffold_85 . biological_region 263386 263387 0.999 - . logic_name=eponine scaffold_85 . biological_region 272326 272326 0.999 + . logic_name=eponine scaffold_85 . biological_region 272386 272392 0.999 - . logic_name=eponine scaffold_85 . biological_region 272443 272446 0.999 + . logic_name=eponine scaffold_85 . exon 265615 266034 . + . ID=Physo140438.3;Parent=Physo140438;constitutive=1;rank=3 scaffold_85 ensembl protein_coding_gene 266850 271934 . - . ID=Physo140439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850065;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 266850 271934 . - . ID=Physo140439;Parent=Physo140439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 266850 268247 . - 0 ID=Physo140439;Parent=Physo140439;rank=6 scaffold_85 . exon 266850 268247 . - . ID=Physo140439.6;Parent=Physo140439;constitutive=1;rank=6 scaffold_85 . CDS 268605 268807 . - 0 ID=Physo140439;Parent=Physo140439;rank=5 scaffold_85 . exon 268605 268807 . - . ID=Physo140439.5;Parent=Physo140439;constitutive=1;ensembl_phase=1;rank=5 scaffold_85 . CDS 268951 269251 . - 0 ID=Physo140439;Parent=Physo140439;rank=4 scaffold_85 . exon 268951 269251 . - . ID=Physo140439.4;Parent=Physo140439;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_85 . CDS 269753 270242 . - 0 ID=Physo140439;Parent=Physo140439;rank=3 scaffold_85 . exon 269753 270242 . - . ID=Physo140439.3;Parent=Physo140439;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 270272 271843 . - 0 ID=Physo140439;Parent=Physo140439;rank=2 scaffold_85 . exon 270272 271843 . - . ID=Physo140439.2;Parent=Physo140439;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_85 . CDS 271906 271934 . - 0 ID=Physo140439;Parent=Physo140439;rank=1 scaffold_85 . exon 271906 271934 . - . ID=Physo140439.1;Parent=Physo140439;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 . repeat_region 275409 275441 . ? . description=trf scaffold_85 . repeat_region 275636 275667 . ? . description=dust scaffold_85 . repeat_region 277215 277244 . ? . description=trf scaffold_85 . repeat_region 279247 279309 . ? . description=dust scaffold_85 . repeat_region 279897 279913 . ? . description=dust scaffold_85 ensembl protein_coding_gene 273708 275636 . - . ID=Physo140440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850066;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 273708 275636 . - . ID=Physo140440;Parent=Physo140440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 273708 275636 . - 0 ID=Physo140440;Parent=Physo140440;rank=1 scaffold_85 . exon 273708 275636 . - . ID=Physo140440.1;Parent=Physo140440;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 278445 279399 . - . ID=Physo140441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850067;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 278445 279399 . - . ID=Physo140441;Parent=Physo140441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 278445 278574 . - 0 ID=Physo140441;Parent=Physo140441;rank=3 scaffold_85 . exon 278445 278574 . - . ID=Physo140441.3;Parent=Physo140441;constitutive=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 278654 278971 . - 0 ID=Physo140441;Parent=Physo140441;rank=2 scaffold_85 . exon 278654 278971 . - . ID=Physo140441.2;Parent=Physo140441;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_85 . CDS 279062 279399 . - 0 ID=Physo140441;Parent=Physo140441;rank=1 scaffold_85 . exon 279062 279399 . - . ID=Physo140441.1;Parent=Physo140441;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 279511 280101 . + . ID=Physo140442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850068;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 279511 280101 . + . ID=Physo140442;Parent=Physo140442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 279511 279645 . + 0 ID=Physo140442;Parent=Physo140442;rank=1 scaffold_85 . exon 279511 279645 . + . ID=Physo140442.1;Parent=Physo140442;constitutive=1;rank=1 scaffold_85 . CDS 279679 279841 . + 0 ID=Physo140442;Parent=Physo140442;rank=2 scaffold_85 . exon 279679 279841 . + . ID=Physo140442.2;Parent=Physo140442;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_85 . CDS 279920 280101 . + 0 ID=Physo140442;Parent=Physo140442;rank=3 scaffold_85 . exon 279920 280101 . + . ID=Physo140442.3;Parent=Physo140442;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 ensembl protein_coding_gene 280142 281874 . - . ID=Physo140443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850069;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 280142 281874 . - . ID=Physo140443;Parent=Physo140443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 280142 280695 . - . ID=Physo140443.6;Parent=Physo140443;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_85 . CDS 280344 280695 . - 0 ID=Physo140443;Parent=Physo140443;rank=6 scaffold_85 . CDS 280767 280951 . - 0 ID=Physo140443;Parent=Physo140443;rank=5 scaffold_85 . exon 280767 280951 . - . ID=Physo140443.5;Parent=Physo140443;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_85 . CDS 281020 281180 . - 0 ID=Physo140443;Parent=Physo140443;rank=4 scaffold_85 . exon 281020 281180 . - . ID=Physo140443.4;Parent=Physo140443;constitutive=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 281250 281463 . - 0 ID=Physo140443;Parent=Physo140443;rank=3 scaffold_85 . exon 281250 281463 . - . ID=Physo140443.3;Parent=Physo140443;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_85 . CDS 281554 281715 . - 0 ID=Physo140443;Parent=Physo140443;rank=2 scaffold_85 . exon 281554 281715 . - . ID=Physo140443.2;Parent=Physo140443;constitutive=1;rank=2 scaffold_85 . CDS 281794 281841 . - 0 ID=Physo140443;Parent=Physo140443;rank=1 scaffold_85 . exon 281794 281874 . - . ID=Physo140443.1;Parent=Physo140443;constitutive=1;ensembl_phase=-1;rank=1 scaffold_85 ensembl protein_coding_gene 282521 285157 . + . ID=Physo140444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850070;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 282521 285157 . + . ID=Physo140444;Parent=Physo140444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 282521 283501 . + 0 ID=Physo140444;Parent=Physo140444;rank=1 scaffold_85 . exon 282521 283501 . + . ID=Physo140444.1;Parent=Physo140444;constitutive=1;rank=1 scaffold_85 . CDS 283545 283554 . + 0 ID=Physo140444;Parent=Physo140444;rank=2 scaffold_85 . CDS 283600 284587 . + 0 ID=Physo140444;Parent=Physo140444;rank=3 scaffold_85 . CDS 284665 284827 . + 0 ID=Physo140444;Parent=Physo140444;rank=4 scaffold_85 . CDS 284906 285157 . + 0 ID=Physo140444;Parent=Physo140444;rank=5 scaffold_85 . exon 283545 283554 . + . ID=Physo140444.2;Parent=Physo140444;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_85 . exon 283600 284587 . + . ID=Physo140444.3;Parent=Physo140444;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_85 . exon 284665 284827 . + . ID=Physo140444.4;Parent=Physo140444;constitutive=1;ensembl_phase=2;rank=4 scaffold_85 . exon 284906 285157 . + . ID=Physo140444.5;Parent=Physo140444;constitutive=1;rank=5 scaffold_85 ensembl protein_coding_gene 290486 291601 . + . ID=Physo140445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850071;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 290486 291601 . + . ID=Physo140445;Parent=Physo140445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 290486 290561 . + 0 ID=Physo140445;Parent=Physo140445;rank=1 scaffold_85 . exon 290486 290561 . + . ID=Physo140445.1;Parent=Physo140445;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . CDS 290636 291187 . + 0 ID=Physo140445;Parent=Physo140445;rank=2 scaffold_85 . exon 290636 291187 . + . ID=Physo140445.2;Parent=Physo140445;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 291267 291601 . + 0 ID=Physo140445;Parent=Physo140445;rank=3 scaffold_85 . exon 291267 291601 . + . ID=Physo140445.3;Parent=Physo140445;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 ensembl protein_coding_gene 292362 294742 . + . ID=Physo140446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850072;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 292362 294742 . + . ID=Physo140446;Parent=Physo140446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 292362 293153 . + 0 ID=Physo140446;Parent=Physo140446;rank=1 scaffold_85 . exon 292362 293153 . + . ID=Physo140446.1;Parent=Physo140446;constitutive=1;rank=1 scaffold_85 . CDS 293193 293659 . + 0 ID=Physo140446;Parent=Physo140446;rank=2 scaffold_85 . CDS 293762 294423 . + 0 ID=Physo140446;Parent=Physo140446;rank=3 scaffold_85 . CDS 294520 294701 . + 0 ID=Physo140446;Parent=Physo140446;rank=4 scaffold_85 . CDS 294728 294742 . + 0 ID=Physo140446;Parent=Physo140446;rank=5 scaffold_85 . biological_region 297234 297236 0.999 - . logic_name=eponine scaffold_85 . repeat_region 297389 297414 . ? . description=trf scaffold_85 . repeat_region 299568 299599 . ? . description=trf scaffold_85 . biological_region 300332 300333 0.999 - . logic_name=eponine scaffold_85 . repeat_region 300841 300859 . ? . description=dust scaffold_85 . exon 293193 293659 . + . ID=Physo140446.2;Parent=Physo140446;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_85 . exon 293762 294423 . + . ID=Physo140446.3;Parent=Physo140446;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_85 . exon 294520 294701 . + . ID=Physo140446.4;Parent=Physo140446;constitutive=1;ensembl_phase=1;rank=4 scaffold_85 . exon 294728 294742 . + . ID=Physo140446.5;Parent=Physo140446;constitutive=1;rank=5 scaffold_85 ensembl protein_coding_gene 295737 298134 . + . ID=Physo140447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850073;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 295737 298134 . + . ID=Physo140447;Parent=Physo140447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 295737 297882 . + 0 ID=Physo140447;Parent=Physo140447;rank=1 scaffold_85 . exon 295737 297882 . + . ID=Physo140447.1;Parent=Physo140447;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . CDS 297962 298134 . + 0 ID=Physo140447;Parent=Physo140447;rank=2 scaffold_85 . exon 297962 298134 . + . ID=Physo140447.2;Parent=Physo140447;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 ensembl protein_coding_gene 298288 299196 . - . ID=Physo140448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850074;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 298288 299196 . - . ID=Physo140448;Parent=Physo140448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 298288 298359 . - 0 ID=Physo140448;Parent=Physo140448;rank=2 scaffold_85 . exon 298288 298359 . - . ID=Physo140448.2;Parent=Physo140448;constitutive=1;rank=2 scaffold_85 . CDS 298435 299196 . - 0 ID=Physo140448;Parent=Physo140448;rank=1 scaffold_85 . exon 298435 299196 . - . ID=Physo140448.1;Parent=Physo140448;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 299452 301082 . - . ID=Physo140449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850075;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 299452 301082 . - . ID=Physo140449;Parent=Physo140449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 299452 299972 . - 0 ID=Physo140449;Parent=Physo140449;rank=2 scaffold_85 . exon 299452 299972 . - . ID=Physo140449.2;Parent=Physo140449;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 300308 300980 . - 0 ID=Physo140449;Parent=Physo140449;rank=1 scaffold_85 . exon 300308 301082 . - . ID=Physo140449.1;Parent=Physo140449;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_85 ensembl protein_coding_gene 301562 303069 . - . ID=Physo140450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850076;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 301562 303069 . - . ID=Physo140450;Parent=Physo140450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 301562 302735 . - . ID=Physo140450.2;Parent=Physo140450;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_85 . CDS 301707 302735 . - 0 ID=Physo140450;Parent=Physo140450;rank=2 scaffold_85 . CDS 302755 303069 . - 0 ID=Physo140450;Parent=Physo140450;rank=1 scaffold_85 . exon 302755 303069 . - . ID=Physo140450.1;Parent=Physo140450;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 310035 311551 . - . ID=Physo140453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850079;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 310035 311551 . - . ID=Physo140453;Parent=Physo140453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . exon 310035 311551 . - . ID=Physo140453.1;Parent=Physo140453;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_85 . CDS 310328 311551 . - 0 ID=Physo140453;Parent=Physo140453;rank=1 scaffold_85 ensembl protein_coding_gene 307440 309840 . + . ID=Physo158145;biotype=protein_coding;external_name=C_scaffold_85000011;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 307440 309840 . + . ID=Physo158145;Parent=Physo158145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 307440 308093 . + 0 ID=Physo158145;Parent=Physo158145;rank=1 scaffold_85 . exon 307440 308093 . + . ID=Physo158145.1;Parent=Physo158145;constitutive=1;rank=1 scaffold_85 . CDS 308145 308821 . + 0 ID=Physo158145;Parent=Physo158145;rank=2 scaffold_85 . exon 308145 308821 . + . ID=Physo158145.2;Parent=Physo158145;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_85 . CDS 308861 308880 . + 0 ID=Physo158145;Parent=Physo158145;rank=3 scaffold_85 . exon 308861 308880 . + . ID=Physo158145.3;Parent=Physo158145;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_85 . CDS 309074 309436 . + 0 ID=Physo158145;Parent=Physo158145;rank=4 scaffold_85 . exon 309074 309436 . + . ID=Physo158145.4;Parent=Physo158145;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 309557 309840 . + 0 ID=Physo158145;Parent=Physo158145;rank=5 scaffold_85 . exon 309557 309840 . + . ID=Physo158145.5;Parent=Physo158145;constitutive=1;ensembl_phase=1;rank=5 scaffold_85 . biological_region 312366 312371 0.999 - . logic_name=eponine scaffold_85 . biological_region 312483 312487 0.999 + . logic_name=eponine scaffold_85 . biological_region 313013 313015 0.999 - . logic_name=eponine scaffold_85 . biological_region 313334 313338 0.999 - . logic_name=eponine scaffold_85 . repeat_region 316018 316025 . ? . description=dust scaffold_85 . repeat_region 316490 316497 . ? . description=dust scaffold_85 . biological_region 316548 316551 0.999 + . logic_name=eponine scaffold_85 . biological_region 316569 316571 0.999 + . logic_name=eponine scaffold_85 . repeat_region 316575 316582 . ? . description=dust scaffold_85 . biological_region 318159 318165 0.999 + . logic_name=eponine scaffold_85 . repeat_region 318167 318340 . + . description=(CGAT)n scaffold_85 . biological_region 318186 318193 0.999 + . logic_name=eponine scaffold_85 . repeat_region 318187 318321 . ? . description=trf scaffold_85 . repeat_region 318193 318282 . ? . description=dust scaffold_85 . repeat_region 318273 318302 . ? . description=trf scaffold_85 . repeat_region 318289 318350 . ? . description=trf scaffold_85 . repeat_region 319523 320194 . ? . description=dust scaffold_85 . biological_region 321564 321569 0.999 + . logic_name=eponine scaffold_85 ensembl protein_coding_gene 320250 321296 . + . ID=Physo140455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850081;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 320250 321296 . + . ID=Physo140455;Parent=Physo140455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 320250 321296 . + 0 ID=Physo140455;Parent=Physo140455;rank=1 scaffold_85 . exon 320250 321296 . + . ID=Physo140455.1;Parent=Physo140455;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 312200 315913 . - . ID=Physo158148;biotype=protein_coding;external_name=C_scaffold_85000014;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 312200 315913 . - . ID=Physo158148;Parent=Physo158148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 312200 312707 . - 0 ID=Physo158148;Parent=Physo158148;rank=12 scaffold_85 . exon 312200 312707 . - . ID=Physo158148.12;Parent=Physo158148;constitutive=1;ensembl_phase=2;rank=12 scaffold_85 . CDS 312765 313256 . - 0 ID=Physo158148;Parent=Physo158148;rank=11 scaffold_85 . exon 312765 313256 . - . ID=Physo158148.11;Parent=Physo158148;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_85 . CDS 313356 313818 . - 0 ID=Physo158148;Parent=Physo158148;rank=10 scaffold_85 . exon 313356 313818 . - . ID=Physo158148.10;Parent=Physo158148;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_85 . CDS 313888 313961 . - 0 ID=Physo158148;Parent=Physo158148;rank=9 scaffold_85 . exon 313888 313961 . - . ID=Physo158148.9;Parent=Physo158148;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_85 . CDS 314046 314209 . - 0 ID=Physo158148;Parent=Physo158148;rank=8 scaffold_85 . exon 314046 314209 . - . ID=Physo158148.8;Parent=Physo158148;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_85 . CDS 314341 314423 . - 0 ID=Physo158148;Parent=Physo158148;rank=7 scaffold_85 . exon 314341 314423 . - . ID=Physo158148.7;Parent=Physo158148;constitutive=1;ensembl_phase=1;rank=7 scaffold_85 . CDS 314472 314546 . - 0 ID=Physo158148;Parent=Physo158148;rank=6 scaffold_85 . exon 314472 314546 . - . ID=Physo158148.6;Parent=Physo158148;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_85 . CDS 314598 314703 . - 0 ID=Physo158148;Parent=Physo158148;rank=5 scaffold_85 . exon 314598 314703 . - . ID=Physo158148.5;Parent=Physo158148;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_85 . CDS 314774 315043 . - 0 ID=Physo158148;Parent=Physo158148;rank=4 scaffold_85 . exon 314774 315043 . - . ID=Physo158148.4;Parent=Physo158148;constitutive=1;rank=4 scaffold_85 . CDS 315127 315603 . - 0 ID=Physo158148;Parent=Physo158148;rank=3 scaffold_85 . exon 315127 315603 . - . ID=Physo158148.3;Parent=Physo158148;constitutive=1;rank=3 scaffold_85 . CDS 315667 315751 . - 0 ID=Physo158148;Parent=Physo158148;rank=2 scaffold_85 . exon 315667 315751 . - . ID=Physo158148.2;Parent=Physo158148;constitutive=1;ensembl_phase=2;rank=2 scaffold_85 . CDS 315840 315913 . - 0 ID=Physo158148;Parent=Physo158148;rank=1 scaffold_85 . exon 315840 315913 . - . ID=Physo158148.1;Parent=Physo158148;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_85 ensembl protein_coding_gene 323547 323948 . + . ID=Physo140456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850082;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 323547 323948 . + . ID=Physo140456;Parent=Physo140456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 323547 323948 . + 0 ID=Physo140456;Parent=Physo140456;rank=1 scaffold_85 . exon 323547 323948 . + . ID=Physo140456.1;Parent=Physo140456;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 325816 326668 . - . ID=Physo140457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850083;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 325816 326668 . - . ID=Physo140457;Parent=Physo140457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 325816 325952 . - 0 ID=Physo140457;Parent=Physo140457;rank=2 scaffold_85 . exon 325816 325952 . - . ID=Physo140457.2;Parent=Physo140457;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 326020 326668 . - 0 ID=Physo140457;Parent=Physo140457;rank=1 scaffold_85 . exon 326020 326668 . - . ID=Physo140457.1;Parent=Physo140457;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 327972 332502 . + . ID=Physo140458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850084;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 327972 332502 . + . ID=Physo140458;Parent=Physo140458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 327972 328004 . + 0 ID=Physo140458;Parent=Physo140458;rank=1 scaffold_85 . exon 327972 328004 . + . ID=Physo140458.1;Parent=Physo140458;constitutive=1;rank=1 scaffold_85 . CDS 328072 332502 . + 0 ID=Physo140458;Parent=Physo140458;rank=2 scaffold_85 . exon 328072 332502 . + . ID=Physo140458.2;Parent=Physo140458;constitutive=1;rank=2 scaffold_85 . repeat_region 336097 336243 . ? . description=dust scaffold_85 . biological_region 337506 337507 0.999 + . logic_name=eponine scaffold_85 . repeat_region 338088 338162 . ? . description=trf scaffold_85 . repeat_region 338103 338162 . ? . description=dust scaffold_85 . repeat_region 338123 338162 . ? . description=trf scaffold_85 ensembl protein_coding_gene 332963 335825 . - . ID=Physo140459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850085;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 332963 335825 . - . ID=Physo140459;Parent=Physo140459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 332963 333108 . - 0 ID=Physo140459;Parent=Physo140459;rank=4 scaffold_85 . exon 332963 333108 . - . ID=Physo140459.4;Parent=Physo140459;constitutive=1;ensembl_phase=1;rank=4 scaffold_85 . CDS 333166 334785 . - 0 ID=Physo140459;Parent=Physo140459;rank=3 scaffold_85 . exon 333166 334785 . - . ID=Physo140459.3;Parent=Physo140459;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_85 . CDS 334926 335786 . - 0 ID=Physo140459;Parent=Physo140459;rank=2 scaffold_85 . exon 334926 335786 . - . ID=Physo140459.2;Parent=Physo140459;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 335819 335825 . - 0 ID=Physo140459;Parent=Physo140459;rank=1 scaffold_85 . exon 335819 335825 . - . ID=Physo140459.1;Parent=Physo140459;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 ensembl protein_coding_gene 336415 339837 . + . ID=Physo140460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850086;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 336415 339837 . + . ID=Physo140460;Parent=Physo140460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 336415 336925 . + 0 ID=Physo140460;Parent=Physo140460;rank=1 scaffold_85 . exon 336415 336925 . + . ID=Physo140460.1;Parent=Physo140460;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . CDS 337129 339231 . + 0 ID=Physo140460;Parent=Physo140460;rank=2 scaffold_85 . exon 337129 339231 . + . ID=Physo140460.2;Parent=Physo140460;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 339374 339837 . + 0 ID=Physo140460;Parent=Physo140460;rank=3 scaffold_85 . exon 339374 339837 . + . ID=Physo140460.3;Parent=Physo140460;constitutive=1;ensembl_phase=1;rank=3 scaffold_85 ensembl protein_coding_gene 342238 343818 . - . ID=Physo140461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850087;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 342238 343818 . - . ID=Physo140461;Parent=Physo140461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 342238 343818 . - 0 ID=Physo140461;Parent=Physo140461;rank=1 scaffold_85 . exon 342238 343818 . - . ID=Physo140461.1;Parent=Physo140461;constitutive=1;rank=1 scaffold_85 ensembl protein_coding_gene 346681 348141 . - . ID=Physo140462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_850088;logic_name=jgi_physo1_1 scaffold_85 ensembl transcript 346681 348141 . - . ID=Physo140462;Parent=Physo140462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_85 . CDS 346681 347234 . - 0 ID=Physo140462;Parent=Physo140462;rank=2 scaffold_85 . exon 346681 347234 . - . ID=Physo140462.2;Parent=Physo140462;constitutive=1;ensembl_phase=1;rank=2 scaffold_85 . CDS 347343 348141 . - 0 ID=Physo140462;Parent=Physo140462;rank=1 scaffold_85 . exon 347343 348141 . - . ID=Physo140462.1;Parent=Physo140462;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_85 . repeat_region 350562 351934 . ? . description=dust scaffold_85 . repeat_region 352318 352383 . ? . description=trf scaffold_85 . repeat_region 352461 352556 . ? . description=trf scaffold_85 . biological_region 352919 352922 0.999 - . logic_name=eponine scaffold_85 . repeat_region 352984 353033 . ? . description=dust scaffold_85 . biological_region 354217 354221 0.999 - . logic_name=eponine scaffold_85 . repeat_region 355899 358340 . ? . description=dust scaffold_85 . biological_region 358678 358679 0.999 + . logic_name=eponine scaffold_85 . biological_region 358724 358724 0.999 + . logic_name=eponine scaffold_85 . biological_region 358755 358759 0.999 - . logic_name=eponine scaffold_85 . biological_region 358812 358813 0.999 + . logic_name=eponine scaffold_85 . biological_region 360577 360584 0.999 - . logic_name=eponine scaffold_85 ensembl tRNA_gene 360298 360369 . + . ID=EPrPSOG00000000285;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_85 ensembl transcript 360298 360369 . + . ID=EPrPSOT00000000285;Parent=EPrPSOG00000000285;biotype=tRNA;logic_name=ncrna_eg scaffold_85 . exon 360298 360369 . + . ID=EPrPSOE00000000285;Parent=EPrPSOT00000000285;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_84 1 364382 scaffold_84 . repeat_region 266 468 . - . description=Polinton-1_PI scaffold_84 . repeat_region 483 771 . - . description=Polinton-1_PI scaffold_84 . repeat_region 824 890 . + . description=Polinton-1_PI scaffold_84 . repeat_region 913 953 . + . description=Polinton-1_PI scaffold_84 . repeat_region 971 1137 . - . description=Polinton-1_PI scaffold_84 . repeat_region 1201 2729 . ? . description=dust scaffold_84 . repeat_region 2730 2894 . + . description=Polinton-1_PI scaffold_84 . repeat_region 3776 4918 . ? . description=dust scaffold_84 . repeat_region 5851 6713 . ? . description=dust scaffold_84 . repeat_region 7603 7610 . ? . description=dust scaffold_84 . biological_region 9802 9803 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 68 654 . - . ID=Physo140274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840001;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 68 654 . - . ID=Physo140274;Parent=Physo140274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 68 505 . - . ID=Physo140274.2;Parent=Physo140274;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_84 . CDS 69 505 . - 0 ID=Physo140274;Parent=Physo140274;rank=2 scaffold_84 . CDS 527 638 . - 0 ID=Physo140274;Parent=Physo140274;rank=1 scaffold_84 . exon 527 654 . - . ID=Physo140274.1;Parent=Physo140274;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_84 ensembl protein_coding_gene 7666 12565 . + . ID=Physo140275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840002;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 7666 12565 . + . ID=Physo140275;Parent=Physo140275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 7666 7683 . + 0 ID=Physo140275;Parent=Physo140275;rank=1 scaffold_84 . exon 7666 7683 . + . ID=Physo140275.1;Parent=Physo140275;constitutive=1;rank=1 scaffold_84 . CDS 7763 7843 . + 0 ID=Physo140275;Parent=Physo140275;rank=2 scaffold_84 . exon 7763 7843 . + . ID=Physo140275.2;Parent=Physo140275;constitutive=1;rank=2 scaffold_84 . CDS 7918 7980 . + 0 ID=Physo140275;Parent=Physo140275;rank=3 scaffold_84 . exon 7918 7980 . + . ID=Physo140275.3;Parent=Physo140275;constitutive=1;rank=3 scaffold_84 . CDS 8048 8152 . + 0 ID=Physo140275;Parent=Physo140275;rank=4 scaffold_84 . exon 8048 8152 . + . ID=Physo140275.4;Parent=Physo140275;constitutive=1;rank=4 scaffold_84 . CDS 8225 8323 . + 0 ID=Physo140275;Parent=Physo140275;rank=5 scaffold_84 . exon 8225 8323 . + . ID=Physo140275.5;Parent=Physo140275;constitutive=1;rank=5 scaffold_84 . CDS 8427 8492 . + 0 ID=Physo140275;Parent=Physo140275;rank=6 scaffold_84 . exon 8427 8492 . + . ID=Physo140275.6;Parent=Physo140275;constitutive=1;rank=6 scaffold_84 . CDS 8573 8671 . + 0 ID=Physo140275;Parent=Physo140275;rank=7 scaffold_84 . exon 8573 8671 . + . ID=Physo140275.7;Parent=Physo140275;constitutive=1;rank=7 scaffold_84 . CDS 8748 8846 . + 0 ID=Physo140275;Parent=Physo140275;rank=8 scaffold_84 . exon 8748 8846 . + . ID=Physo140275.8;Parent=Physo140275;constitutive=1;rank=8 scaffold_84 . CDS 9080 9196 . + 0 ID=Physo140275;Parent=Physo140275;rank=9 scaffold_84 . exon 9080 9196 . + . ID=Physo140275.9;Parent=Physo140275;constitutive=1;rank=9 scaffold_84 . CDS 9264 11588 . + 0 ID=Physo140275;Parent=Physo140275;rank=10 scaffold_84 . exon 9264 11588 . + . ID=Physo140275.10;Parent=Physo140275;constitutive=1;rank=10 scaffold_84 . CDS 11658 11739 . + 0 ID=Physo140275;Parent=Physo140275;rank=11 scaffold_84 . CDS 11808 12333 . + 0 ID=Physo140275;Parent=Physo140275;rank=12 scaffold_84 . CDS 12412 12565 . + 0 ID=Physo140275;Parent=Physo140275;rank=13 scaffold_84 . repeat_region 17773 17792 . ? . description=trf scaffold_84 . repeat_region 18511 18537 . ? . description=trf scaffold_84 . exon 11658 11739 . + . ID=Physo140275.11;Parent=Physo140275;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_84 . exon 11808 12333 . + . ID=Physo140275.12;Parent=Physo140275;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_84 . exon 12412 12565 . + . ID=Physo140275.13;Parent=Physo140275;constitutive=1;ensembl_phase=2;rank=13 scaffold_84 ensembl protein_coding_gene 14223 14798 . + . ID=Physo140276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840003;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 14223 14798 . + . ID=Physo140276;Parent=Physo140276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 14223 14798 . + 0 ID=Physo140276;Parent=Physo140276;rank=1 scaffold_84 . exon 14223 14798 . + . ID=Physo140276.1;Parent=Physo140276;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 15021 22337 . - . ID=Physo140277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840004;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 15021 22337 . - . ID=Physo140277;Parent=Physo140277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 15021 22337 . - 0 ID=Physo140277;Parent=Physo140277;rank=1 scaffold_84 . exon 15021 22337 . - . ID=Physo140277.1;Parent=Physo140277;constitutive=1;rank=1 scaffold_84 . biological_region 21052 21055 0.999 + . logic_name=eponine scaffold_84 . biological_region 21077 21078 0.999 + . logic_name=eponine scaffold_84 . repeat_region 23500 23517 . ? . description=dust scaffold_84 . biological_region 24085 24086 0.999 - . logic_name=eponine scaffold_84 . repeat_region 28498 28506 . ? . description=dust scaffold_84 . biological_region 29470 29471 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 23031 24027 . - . ID=Physo140278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840005;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 23031 24027 . - . ID=Physo140278;Parent=Physo140278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 23031 23053 . - 0 ID=Physo140278;Parent=Physo140278;rank=5 scaffold_84 . exon 23031 23053 . - . ID=Physo140278.5;Parent=Physo140278;constitutive=1;ensembl_phase=1;rank=5 scaffold_84 . CDS 23386 23484 . - 0 ID=Physo140278;Parent=Physo140278;rank=4 scaffold_84 . exon 23386 23484 . - . ID=Physo140278.4;Parent=Physo140278;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_84 . CDS 23561 23708 . - 0 ID=Physo140278;Parent=Physo140278;rank=3 scaffold_84 . exon 23561 23708 . - . ID=Physo140278.3;Parent=Physo140278;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_84 . CDS 23782 23907 . - 0 ID=Physo140278;Parent=Physo140278;rank=2 scaffold_84 . exon 23782 23907 . - . ID=Physo140278.2;Parent=Physo140278;constitutive=1;rank=2 scaffold_84 . CDS 23944 24027 . - 0 ID=Physo140278;Parent=Physo140278;rank=1 scaffold_84 . exon 23944 24027 . - . ID=Physo140278.1;Parent=Physo140278;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 24963 25706 . + . ID=Physo140279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840006;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 24963 25706 . + . ID=Physo140279;Parent=Physo140279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 24963 25706 . + 0 ID=Physo140279;Parent=Physo140279;rank=1 scaffold_84 . exon 24963 25706 . + . ID=Physo140279.1;Parent=Physo140279;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 26651 28345 . + . ID=Physo140280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840007;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 26651 28345 . + . ID=Physo140280;Parent=Physo140280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 26651 27081 . + 0 ID=Physo140280;Parent=Physo140280;rank=1 scaffold_84 . exon 26651 27081 . + . ID=Physo140280.1;Parent=Physo140280;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 27415 28345 . + 0 ID=Physo140280;Parent=Physo140280;rank=2 scaffold_84 . exon 27415 28345 . + . ID=Physo140280.2;Parent=Physo140280;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 ensembl protein_coding_gene 29318 29911 . - . ID=Physo140281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840008;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 29318 29911 . - . ID=Physo140281;Parent=Physo140281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 29318 29911 . - 0 ID=Physo140281;Parent=Physo140281;rank=1 scaffold_84 . exon 29318 29911 . - . ID=Physo140281.1;Parent=Physo140281;constitutive=1;rank=1 scaffold_84 . repeat_region 32439 32487 . ? . description=trf scaffold_84 ensembl protein_coding_gene 34016 43350 . + . ID=Physo140282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840009;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 34016 43350 . + . ID=Physo140282;Parent=Physo140282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 34016 34489 . + 0 ID=Physo140282;Parent=Physo140282;rank=1 scaffold_84 . exon 34016 34489 . + . ID=Physo140282.1;Parent=Physo140282;constitutive=1;rank=1 scaffold_84 . CDS 34522 35207 . + 0 ID=Physo140282;Parent=Physo140282;rank=2 scaffold_84 . exon 34522 35207 . + . ID=Physo140282.2;Parent=Physo140282;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_84 . CDS 35925 37190 . + 0 ID=Physo140282;Parent=Physo140282;rank=3 scaffold_84 . exon 35925 37190 . + . ID=Physo140282.3;Parent=Physo140282;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_84 . CDS 37612 37724 . + 0 ID=Physo140282;Parent=Physo140282;rank=4 scaffold_84 . exon 37612 37724 . + . ID=Physo140282.4;Parent=Physo140282;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_84 . CDS 37763 38136 . + 0 ID=Physo140282;Parent=Physo140282;rank=5 scaffold_84 . exon 37763 38136 . + . ID=Physo140282.5;Parent=Physo140282;constitutive=1;ensembl_phase=1;rank=5 scaffold_84 . CDS 38499 40498 . + 0 ID=Physo140282;Parent=Physo140282;rank=6 scaffold_84 . exon 38499 40498 . + . ID=Physo140282.6;Parent=Physo140282;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_84 . CDS 40675 42016 . + 0 ID=Physo140282;Parent=Physo140282;rank=7 scaffold_84 . CDS 42043 42465 . + 0 ID=Physo140282;Parent=Physo140282;rank=8 scaffold_84 . CDS 42622 42716 . + 0 ID=Physo140282;Parent=Physo140282;rank=9 scaffold_84 . CDS 42958 43188 . + 0 ID=Physo140282;Parent=Physo140282;rank=10 scaffold_84 . CDS 43287 43350 . + 0 ID=Physo140282;Parent=Physo140282;rank=11 scaffold_84 . biological_region 44300 44301 0.999 - . logic_name=eponine scaffold_84 . repeat_region 45604 45621 . ? . description=dust scaffold_84 . exon 40675 42016 . + . ID=Physo140282.7;Parent=Physo140282;constitutive=1;ensembl_phase=2;rank=7 scaffold_84 . exon 42043 42465 . + . ID=Physo140282.8;Parent=Physo140282;constitutive=1;rank=8 scaffold_84 . exon 42622 42716 . + . ID=Physo140282.9;Parent=Physo140282;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_84 . exon 42958 43188 . + . ID=Physo140282.10;Parent=Physo140282;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_84 . exon 43287 43350 . + . ID=Physo140282.11;Parent=Physo140282;constitutive=1;ensembl_phase=2;rank=11 scaffold_84 ensembl protein_coding_gene 46674 53799 . + . ID=Physo140283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840010;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 46674 53799 . + . ID=Physo140283;Parent=Physo140283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 46674 47147 . + 0 ID=Physo140283;Parent=Physo140283;rank=1 scaffold_84 . exon 46674 47147 . + . ID=Physo140283.1;Parent=Physo140283;constitutive=1;rank=1 scaffold_84 . CDS 47180 47865 . + 0 ID=Physo140283;Parent=Physo140283;rank=2 scaffold_84 . exon 47180 47865 . + . ID=Physo140283.2;Parent=Physo140283;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_84 . CDS 48583 49243 . + 0 ID=Physo140283;Parent=Physo140283;rank=3 scaffold_84 . exon 48583 49243 . + . ID=Physo140283.3;Parent=Physo140283;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 . CDS 49448 50958 . + 0 ID=Physo140283;Parent=Physo140283;rank=4 scaffold_84 . CDS 51135 52914 . + 0 ID=Physo140283;Parent=Physo140283;rank=5 scaffold_84 . CDS 53071 53165 . + 0 ID=Physo140283;Parent=Physo140283;rank=6 scaffold_84 . CDS 53407 53637 . + 0 ID=Physo140283;Parent=Physo140283;rank=7 scaffold_84 . CDS 53736 53799 . + 0 ID=Physo140283;Parent=Physo140283;rank=8 scaffold_84 . exon 49448 50958 . + . ID=Physo140283.4;Parent=Physo140283;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_84 . exon 51135 52914 . + . ID=Physo140283.5;Parent=Physo140283;constitutive=1;ensembl_phase=2;rank=5 scaffold_84 . exon 53071 53165 . + . ID=Physo140283.6;Parent=Physo140283;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_84 . exon 53407 53637 . + . ID=Physo140283.7;Parent=Physo140283;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_84 . exon 53736 53799 . + . ID=Physo140283.8;Parent=Physo140283;constitutive=1;ensembl_phase=2;rank=8 scaffold_84 ensembl protein_coding_gene 58029 58913 . + . ID=Physo140284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840011;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 58029 58913 . + . ID=Physo140284;Parent=Physo140284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 58029 58068 . + 0 ID=Physo140284;Parent=Physo140284;rank=1 scaffold_84 . exon 58029 58068 . + . ID=Physo140284.1;Parent=Physo140284;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 58165 58913 . + 0 ID=Physo140284;Parent=Physo140284;rank=2 scaffold_84 . exon 58165 58913 . + . ID=Physo140284.2;Parent=Physo140284;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . biological_region 61134 61137 0.999 - . logic_name=eponine scaffold_84 . biological_region 64401 64403 0.999 + . logic_name=eponine scaffold_84 . biological_region 65326 65331 0.999 - . logic_name=eponine scaffold_84 . biological_region 65383 65383 0.999 + . logic_name=eponine scaffold_84 . biological_region 65411 65415 0.999 + . logic_name=eponine scaffold_84 . biological_region 67018 67025 0.999 - . logic_name=eponine scaffold_84 . repeat_region 68742 68974 . ? . description=trf scaffold_84 ensembl tRNA_gene 59496 59568 . + . ID=EPrPSOG00000000283;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_84 ensembl transcript 59496 59568 . + . ID=EPrPSOT00000000283;Parent=EPrPSOG00000000283;biotype=tRNA;logic_name=ncrna_eg scaffold_84 . exon 59496 59568 . + . ID=EPrPSOE00000000283;Parent=EPrPSOT00000000283;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 ensembl protein_coding_gene 59995 67128 . + . ID=Physo140285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840012;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 59995 67128 . + . ID=Physo140285;Parent=Physo140285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 59995 67128 . + 0 ID=Physo140285;Parent=Physo140285;rank=1 scaffold_84 . exon 59995 67128 . + . ID=Physo140285.1;Parent=Physo140285;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 68519 69220 . - . ID=Physo140286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840013;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 68519 69220 . - . ID=Physo140286;Parent=Physo140286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 68519 69220 . - 0 ID=Physo140286;Parent=Physo140286;rank=1 scaffold_84 . exon 68519 69220 . - . ID=Physo140286.1;Parent=Physo140286;constitutive=1;rank=1 scaffold_84 . repeat_region 76968 76975 . ? . description=dust scaffold_84 ensembl protein_coding_gene 69963 70298 . + . ID=Physo140287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840014;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 69963 70298 . + . ID=Physo140287;Parent=Physo140287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 69963 70298 . + 0 ID=Physo140287;Parent=Physo140287;rank=1 scaffold_84 . exon 69963 70298 . + . ID=Physo140287.1;Parent=Physo140287;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 73635 77005 . + . ID=Physo140288;biotype=protein_coding;description=Cellulose synthase 4 [Source:UniProtKB/TrEMBL%3BAcc:A5A600];external_name=CES4;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 73635 77005 . + . ID=Physo140288;Parent=Physo140288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 73635 74657 . + 0 ID=Physo140288;Parent=Physo140288;rank=1 scaffold_84 . exon 73635 74657 . + . ID=Physo140288.1;Parent=Physo140288;constitutive=1;rank=1 scaffold_84 . CDS 74752 76797 . + 0 ID=Physo140288;Parent=Physo140288;rank=2 scaffold_84 . exon 74752 77005 . + . ID=Physo140288.2;Parent=Physo140288;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_84 ensembl protein_coding_gene 77502 78226 . + . ID=Physo140289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840016;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 77502 78226 . + . ID=Physo140289;Parent=Physo140289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 77502 77662 . + 0 ID=Physo140289;Parent=Physo140289;rank=1 scaffold_84 . exon 77502 77662 . + . ID=Physo140289.1;Parent=Physo140289;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 77736 77910 . + 0 ID=Physo140289;Parent=Physo140289;rank=2 scaffold_84 . exon 77736 77910 . + . ID=Physo140289.2;Parent=Physo140289;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 78056 78226 . + 0 ID=Physo140289;Parent=Physo140289;rank=3 scaffold_84 . exon 78056 78226 . + . ID=Physo140289.3;Parent=Physo140289;constitutive=1;rank=3 scaffold_84 . repeat_region 79881 79917 . ? . description=trf scaffold_84 . biological_region 81134 81135 0.999 - . logic_name=eponine scaffold_84 . biological_region 81368 81370 0.999 + . logic_name=eponine scaffold_84 . biological_region 81397 81398 0.999 + . logic_name=eponine scaffold_84 . biological_region 81534 81537 0.999 - . logic_name=eponine scaffold_84 . biological_region 83705 83709 0.999 + . logic_name=eponine scaffold_84 . biological_region 83729 83731 0.999 + . logic_name=eponine scaffold_84 . biological_region 84334 84335 0.999 - . logic_name=eponine scaffold_84 . biological_region 84378 84383 0.999 - . logic_name=eponine scaffold_84 . biological_region 84547 84552 0.999 - . logic_name=eponine scaffold_84 . biological_region 84553 84559 0.999 + . logic_name=eponine scaffold_84 . biological_region 85279 85282 0.999 - . logic_name=eponine scaffold_84 . biological_region 87040 87040 0.999 + . logic_name=eponine scaffold_84 . biological_region 87318 87324 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 88584 89636 . - . ID=Physo109279;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_840001;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 88584 89636 . - . ID=Physo109279;Parent=Physo109279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 88584 89636 . - 0 ID=Physo109279;Parent=Physo109279;rank=1 scaffold_84 . exon 88584 89636 . - . ID=Physo109279.1;Parent=Physo109279;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 78800 86939 . - . ID=Physo140290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840017;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 78800 86939 . - . ID=Physo140290;Parent=Physo140290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 78800 78828 . - 0 ID=Physo140290;Parent=Physo140290;rank=13 scaffold_84 . exon 78800 78828 . - . ID=Physo140290.13;Parent=Physo140290;constitutive=1;ensembl_phase=1;rank=13 scaffold_84 . CDS 78965 79064 . - 0 ID=Physo140290;Parent=Physo140290;rank=12 scaffold_84 . exon 78965 79064 . - . ID=Physo140290.12;Parent=Physo140290;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_84 . CDS 79299 79691 . - 0 ID=Physo140290;Parent=Physo140290;rank=11 scaffold_84 . exon 79299 79691 . - . ID=Physo140290.11;Parent=Physo140290;constitutive=1;rank=11 scaffold_84 . CDS 79764 80109 . - 0 ID=Physo140290;Parent=Physo140290;rank=10 scaffold_84 . exon 79764 80109 . - . ID=Physo140290.10;Parent=Physo140290;constitutive=1;ensembl_phase=2;rank=10 scaffold_84 . CDS 80248 80606 . - 0 ID=Physo140290;Parent=Physo140290;rank=9 scaffold_84 . exon 80248 80606 . - . ID=Physo140290.9;Parent=Physo140290;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_84 . CDS 80640 80834 . - 0 ID=Physo140290;Parent=Physo140290;rank=8 scaffold_84 . exon 80640 80834 . - . ID=Physo140290.8;Parent=Physo140290;constitutive=1;rank=8 scaffold_84 . CDS 80909 81445 . - 0 ID=Physo140290;Parent=Physo140290;rank=7 scaffold_84 . exon 80909 81445 . - . ID=Physo140290.7;Parent=Physo140290;constitutive=1;rank=7 scaffold_84 . CDS 81556 83967 . - 0 ID=Physo140290;Parent=Physo140290;rank=6 scaffold_84 . exon 81556 83967 . - . ID=Physo140290.6;Parent=Physo140290;constitutive=1;rank=6 scaffold_84 . CDS 83990 84270 . - 0 ID=Physo140290;Parent=Physo140290;rank=5 scaffold_84 . exon 83990 84270 . - . ID=Physo140290.5;Parent=Physo140290;constitutive=1;ensembl_phase=1;rank=5 scaffold_84 . CDS 84420 85591 . - 0 ID=Physo140290;Parent=Physo140290;rank=4 scaffold_84 . exon 84420 85591 . - . ID=Physo140290.4;Parent=Physo140290;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_84 . CDS 85898 86300 . - 0 ID=Physo140290;Parent=Physo140290;rank=3 scaffold_84 . exon 85898 86300 . - . ID=Physo140290.3;Parent=Physo140290;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_84 . CDS 86342 86556 . - 0 ID=Physo140290;Parent=Physo140290;rank=2 scaffold_84 . exon 86342 86556 . - . ID=Physo140290.2;Parent=Physo140290;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 86707 86939 . - 0 ID=Physo140290;Parent=Physo140290;rank=1 scaffold_84 . exon 86707 86939 . - . ID=Physo140290.1;Parent=Physo140290;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . repeat_region 91121 91402 . - . description=GypsyPi-1c_I-int scaffold_84 . repeat_region 91532 91557 . ? . description=dust scaffold_84 . repeat_region 91680 91687 . ? . description=dust scaffold_84 . repeat_region 91744 94060 . - . description=GypsyPi-1c_I-int scaffold_84 . repeat_region 98021 98032 . ? . description=dust scaffold_84 ensembl protein_coding_gene 91640 97168 . - . ID=Physo140292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840019;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 91640 97168 . - . ID=Physo140292;Parent=Physo140292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 91640 92305 . - 0 ID=Physo140292;Parent=Physo140292;rank=9 scaffold_84 . exon 91640 92305 . - . ID=Physo140292.9;Parent=Physo140292;constitutive=1;rank=9 scaffold_84 . CDS 92359 92461 . - 0 ID=Physo140292;Parent=Physo140292;rank=8 scaffold_84 . exon 92359 92461 . - . ID=Physo140292.8;Parent=Physo140292;constitutive=1;ensembl_phase=2;rank=8 scaffold_84 . CDS 92600 93261 . - 0 ID=Physo140292;Parent=Physo140292;rank=7 scaffold_84 . exon 92600 93261 . - . ID=Physo140292.7;Parent=Physo140292;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_84 . CDS 93304 94086 . - 0 ID=Physo140292;Parent=Physo140292;rank=6 scaffold_84 . exon 93304 94086 . - . ID=Physo140292.6;Parent=Physo140292;constitutive=1;rank=6 scaffold_84 . CDS 94625 94921 . - 0 ID=Physo140292;Parent=Physo140292;rank=5 scaffold_84 . exon 94625 94921 . - . ID=Physo140292.5;Parent=Physo140292;constitutive=1;rank=5 scaffold_84 . CDS 95012 95501 . - 0 ID=Physo140292;Parent=Physo140292;rank=4 scaffold_84 . exon 95012 95501 . - . ID=Physo140292.4;Parent=Physo140292;constitutive=1;ensembl_phase=2;rank=4 scaffold_84 . CDS 95575 96239 . - 0 ID=Physo140292;Parent=Physo140292;rank=3 scaffold_84 . exon 95575 96239 . - . ID=Physo140292.3;Parent=Physo140292;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_84 . CDS 96296 96412 . - 0 ID=Physo140292;Parent=Physo140292;rank=2 scaffold_84 . exon 96296 96412 . - . ID=Physo140292.2;Parent=Physo140292;constitutive=1;rank=2 scaffold_84 . CDS 96452 97168 . - 0 ID=Physo140292;Parent=Physo140292;rank=1 scaffold_84 . exon 96452 97168 . - . ID=Physo140292.1;Parent=Physo140292;constitutive=1;rank=1 scaffold_84 . biological_region 98960 98966 0.999 - . logic_name=eponine scaffold_84 . repeat_region 100968 101050 . ? . description=trf scaffold_84 . biological_region 106257 106257 0.999 + . logic_name=eponine scaffold_84 . biological_region 106654 106656 0.999 - . logic_name=eponine scaffold_84 . biological_region 106728 106733 0.999 + . logic_name=eponine scaffold_84 . biological_region 107545 107547 0.999 - . logic_name=eponine scaffold_84 . biological_region 107691 107699 0.999 - . logic_name=eponine scaffold_84 . biological_region 107891 107896 0.999 - . logic_name=eponine scaffold_84 . biological_region 107920 107922 0.999 - . logic_name=eponine scaffold_84 . biological_region 107982 107985 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 101521 104213 . + . ID=Physo140293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840020;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 101521 104213 . + . ID=Physo140293;Parent=Physo140293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 101521 102686 . + 0 ID=Physo140293;Parent=Physo140293;rank=1 scaffold_84 . exon 101521 102686 . + . ID=Physo140293.1;Parent=Physo140293;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 102748 103601 . + 0 ID=Physo140293;Parent=Physo140293;rank=2 scaffold_84 . exon 102748 103601 . + . ID=Physo140293.2;Parent=Physo140293;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 103670 104110 . + 0 ID=Physo140293;Parent=Physo140293;rank=3 scaffold_84 . exon 103670 104110 . + . ID=Physo140293.3;Parent=Physo140293;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 104167 104213 . + 0 ID=Physo140293;Parent=Physo140293;rank=4 scaffold_84 . exon 104167 104213 . + . ID=Physo140293.4;Parent=Physo140293;constitutive=1;ensembl_phase=1;rank=4 scaffold_84 ensembl protein_coding_gene 107157 111436 . - . ID=Physo140294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840021;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 107157 111436 . - . ID=Physo140294;Parent=Physo140294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 107157 107314 . - 0 ID=Physo140294;Parent=Physo140294;rank=7 scaffold_84 . exon 107157 107314 . - . ID=Physo140294.7;Parent=Physo140294;constitutive=1;ensembl_phase=1;rank=7 scaffold_84 . CDS 107344 107780 . - 0 ID=Physo140294;Parent=Physo140294;rank=6 scaffold_84 . exon 107344 107780 . - . ID=Physo140294.6;Parent=Physo140294;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_84 . CDS 107820 108610 . - 0 ID=Physo140294;Parent=Physo140294;rank=5 scaffold_84 . exon 107820 108610 . - . ID=Physo140294.5;Parent=Physo140294;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_84 . CDS 108672 109688 . - 0 ID=Physo140294;Parent=Physo140294;rank=4 scaffold_84 . CDS 109809 110346 . - 0 ID=Physo140294;Parent=Physo140294;rank=3 scaffold_84 . CDS 110396 111171 . - 0 ID=Physo140294;Parent=Physo140294;rank=2 scaffold_84 . CDS 111194 111436 . - 0 ID=Physo140294;Parent=Physo140294;rank=1 scaffold_84 . repeat_region 113486 113493 . ? . description=dust scaffold_84 . repeat_region 114250 114299 . ? . description=dust scaffold_84 . repeat_region 115135 115142 . ? . description=dust scaffold_84 ensembl protein_coding_gene 117324 118046 . + . ID=Physo109280;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BZ7];external_name=EGL12-A;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 117324 118046 . + . ID=Physo109280;Parent=Physo109280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 117324 118046 . + 0 ID=Physo109280;Parent=Physo109280;rank=1 scaffold_84 . exon 117324 118046 . + . ID=Physo109280.1;Parent=Physo109280;constitutive=1;rank=1 scaffold_84 . exon 108672 109688 . - . ID=Physo140294.4;Parent=Physo140294;constitutive=1;rank=4 scaffold_84 . exon 109809 110346 . - . ID=Physo140294.3;Parent=Physo140294;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 . exon 110396 111171 . - . ID=Physo140294.2;Parent=Physo140294;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_84 . exon 111194 111436 . - . ID=Physo140294.1;Parent=Physo140294;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 112657 115824 . - . ID=Physo140295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840022;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 112657 115824 . - . ID=Physo140295;Parent=Physo140295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 112657 113154 . - 0 ID=Physo140295;Parent=Physo140295;rank=5 scaffold_84 . exon 112657 113154 . - . ID=Physo140295.5;Parent=Physo140295;constitutive=1;rank=5 scaffold_84 . CDS 113225 113449 . - 0 ID=Physo140295;Parent=Physo140295;rank=4 scaffold_84 . exon 113225 113449 . - . ID=Physo140295.4;Parent=Physo140295;constitutive=1;rank=4 scaffold_84 . CDS 113565 114105 . - 0 ID=Physo140295;Parent=Physo140295;rank=3 scaffold_84 . exon 113565 114105 . - . ID=Physo140295.3;Parent=Physo140295;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 . CDS 114542 114820 . - 0 ID=Physo140295;Parent=Physo140295;rank=2 scaffold_84 . exon 114542 114820 . - . ID=Physo140295.2;Parent=Physo140295;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_84 . CDS 115691 115824 . - 0 ID=Physo140295;Parent=Physo140295;rank=1 scaffold_84 . exon 115691 115824 . - . ID=Physo140295.1;Parent=Physo140295;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . repeat_region 119023 119162 . ? . description=trf scaffold_84 . biological_region 119778 119779 0.999 - . logic_name=eponine scaffold_84 . repeat_region 125417 125471 . ? . description=trf scaffold_84 . repeat_region 126089 126114 . ? . description=trf scaffold_84 . biological_region 126517 126519 0.999 + . logic_name=eponine scaffold_84 ensembl protein_coding_gene 121338 122203 . + . ID=Physo109281;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q6DTZ0];external_name=EGL12-B;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 121338 122203 . + . ID=Physo109281;Parent=Physo109281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 121338 122203 . + . ID=Physo109281.1;Parent=Physo109281;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_84 . CDS 121381 122106 . + 0 ID=Physo109281;Parent=Physo109281;rank=1 scaffold_84 ensembl protein_coding_gene 118291 118868 . + . ID=Physo140297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840024;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 118291 118868 . + . ID=Physo140297;Parent=Physo140297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 118291 118328 . + 0 ID=Physo140297;Parent=Physo140297;rank=1 scaffold_84 . exon 118291 118328 . + . ID=Physo140297.1;Parent=Physo140297;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 118497 118679 . + 0 ID=Physo140297;Parent=Physo140297;rank=2 scaffold_84 . exon 118497 118679 . + . ID=Physo140297.2;Parent=Physo140297;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_84 . CDS 118717 118810 . + 0 ID=Physo140297;Parent=Physo140297;rank=3 scaffold_84 . exon 118717 118810 . + . ID=Physo140297.3;Parent=Physo140297;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 . CDS 118834 118866 . + 0 ID=Physo140297;Parent=Physo140297;rank=4 scaffold_84 . exon 118834 118868 . + . ID=Physo140297.4;Parent=Physo140297;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_84 ensembl protein_coding_gene 119429 120069 . - . ID=Physo140298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840025;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 119429 120069 . - . ID=Physo140298;Parent=Physo140298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 119429 119599 . - 0 ID=Physo140298;Parent=Physo140298;rank=3 scaffold_84 . exon 119429 119599 . - . ID=Physo140298.3;Parent=Physo140298;constitutive=1;rank=3 scaffold_84 . CDS 119620 119893 . - 0 ID=Physo140298;Parent=Physo140298;rank=2 scaffold_84 . exon 119620 119893 . - . ID=Physo140298.2;Parent=Physo140298;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 119918 119940 . - 0 ID=Physo140298;Parent=Physo140298;rank=1 scaffold_84 . exon 119918 120069 . - . ID=Physo140298.1;Parent=Physo140298;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_84 ensembl protein_coding_gene 127334 128065 . + . ID=Physo140300;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BZ6];external_name=EGL12-C;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 127334 128065 . + . ID=Physo140300;Parent=Physo140300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 127334 128065 . + 0 ID=Physo140300;Parent=Physo140300;rank=1 scaffold_84 . exon 127334 128065 . + . ID=Physo140300.1;Parent=Physo140300;constitutive=1;rank=1 scaffold_84 . repeat_region 130348 130355 . ? . description=dust scaffold_84 . repeat_region 132700 132707 . ? . description=dust scaffold_84 . repeat_region 133868 133987 . + . description=(CAG)n scaffold_84 . repeat_region 134119 134427 . ? . description=dust scaffold_84 ensembl protein_coding_gene 129579 130319 . + . ID=Physo140301;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BZ5];external_name=EGL12-D;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 129579 130319 . + . ID=Physo140301;Parent=Physo140301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 129579 130319 . + 0 ID=Physo140301;Parent=Physo140301;rank=1 scaffold_84 . exon 129579 130319 . + . ID=Physo140301.1;Parent=Physo140301;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 131220 131975 . + . ID=Physo140302;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BZ4];external_name=EGL12-E;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 131220 131975 . + . ID=Physo140302;Parent=Physo140302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 131220 131975 . + 0 ID=Physo140302;Parent=Physo140302;rank=1 scaffold_84 . exon 131220 131975 . + . ID=Physo140302.1;Parent=Physo140302;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 134652 135413 . + . ID=Physo140303;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BZ3];external_name=EGL12-F;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 134652 135413 . + . ID=Physo140303;Parent=Physo140303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 134652 135413 . + 0 ID=Physo140303;Parent=Physo140303;rank=1 scaffold_84 . exon 134652 135413 . + . ID=Physo140303.1;Parent=Physo140303;constitutive=1;rank=1 scaffold_84 . biological_region 138944 138946 0.999 - . logic_name=eponine scaffold_84 . biological_region 138949 138949 0.999 + . logic_name=eponine scaffold_84 . biological_region 139589 139595 0.999 + . logic_name=eponine scaffold_84 . biological_region 139674 139676 0.999 + . logic_name=eponine scaffold_84 . biological_region 140008 140011 0.999 - . logic_name=eponine scaffold_84 . biological_region 145946 145948 0.999 + . logic_name=eponine scaffold_84 . biological_region 145981 145982 0.999 + . logic_name=eponine scaffold_84 . biological_region 146140 146147 0.999 + . logic_name=eponine scaffold_84 . biological_region 147141 147142 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 138629 138946 . - . ID=Physo140304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840031;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 138629 138946 . - . ID=Physo140304;Parent=Physo140304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 138629 138946 . - 0 ID=Physo140304;Parent=Physo140304;rank=1 scaffold_84 . exon 138629 138946 . - . ID=Physo140304.1;Parent=Physo140304;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 146311 147592 . + . ID=Physo140305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840032;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 146311 147592 . + . ID=Physo140305;Parent=Physo140305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 146311 147592 . + . ID=Physo140305.1;Parent=Physo140305;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_84 . CDS 146379 147323 . + 0 ID=Physo140305;Parent=Physo140305;rank=1 scaffold_84 . repeat_region 148167 148216 . ? . description=dust scaffold_84 . repeat_region 154788 154848 . ? . description=trf scaffold_84 . repeat_region 154802 154861 . ? . description=trf scaffold_84 . repeat_region 154828 154863 . ? . description=trf scaffold_84 . repeat_region 154857 154971 . ? . description=trf scaffold_84 . repeat_region 154859 154971 . ? . description=trf scaffold_84 . repeat_region 154865 154973 . ? . description=trf scaffold_84 . repeat_region 155683 155703 . ? . description=dust scaffold_84 . repeat_region 157405 157424 . ? . description=dust scaffold_84 . repeat_region 157405 157424 . ? . description=trf scaffold_84 ensembl protein_coding_gene 149653 150906 . - . ID=Physo140306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840033;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 149653 150906 . - . ID=Physo140306;Parent=Physo140306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 149653 150490 . - 0 ID=Physo140306;Parent=Physo140306;rank=2 scaffold_84 . exon 149653 150490 . - . ID=Physo140306.2;Parent=Physo140306;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 150530 150906 . - 0 ID=Physo140306;Parent=Physo140306;rank=1 scaffold_84 . exon 150530 150906 . - . ID=Physo140306.1;Parent=Physo140306;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 ensembl protein_coding_gene 152728 154009 . + . ID=Physo140307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840034;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 152728 154009 . + . ID=Physo140307;Parent=Physo140307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 152728 154009 . + . ID=Physo140307.1;Parent=Physo140307;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_84 . CDS 152796 153740 . + 0 ID=Physo140307;Parent=Physo140307;rank=1 scaffold_84 ensembl protein_coding_gene 154297 155332 . + . ID=Physo140308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840035;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 154297 155332 . + . ID=Physo140308;Parent=Physo140308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 154297 155332 . + . ID=Physo140308.1;Parent=Physo140308;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_84 . CDS 154352 155197 . + 0 ID=Physo140308;Parent=Physo140308;rank=1 scaffold_84 ensembl protein_coding_gene 157103 158247 . + . ID=Physo140309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840036;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 157103 158247 . + . ID=Physo140309;Parent=Physo140309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 157103 157156 . + 0 ID=Physo140309;Parent=Physo140309;rank=1 scaffold_84 . exon 157103 157156 . + . ID=Physo140309.1;Parent=Physo140309;constitutive=1;rank=1 scaffold_84 . CDS 157196 157273 . + 0 ID=Physo140309;Parent=Physo140309;rank=2 scaffold_84 . exon 157196 157273 . + . ID=Physo140309.2;Parent=Physo140309;constitutive=1;rank=2 scaffold_84 . CDS 157437 158063 . + 0 ID=Physo140309;Parent=Physo140309;rank=3 scaffold_84 . exon 157437 158247 . + . ID=Physo140309.3;Parent=Physo140309;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_84 . biological_region 157789 157793 0.999 + . logic_name=eponine scaffold_84 . biological_region 157906 157909 0.999 - . logic_name=eponine scaffold_84 . biological_region 158061 158065 0.999 + . logic_name=eponine scaffold_84 . biological_region 158147 158150 0.999 - . logic_name=eponine scaffold_84 . biological_region 162481 162486 0.999 - . logic_name=eponine scaffold_84 . biological_region 163082 163084 0.999 + . logic_name=eponine scaffold_84 . biological_region 163282 163287 0.999 - . logic_name=eponine scaffold_84 . biological_region 163351 163354 0.999 - . logic_name=eponine scaffold_84 . biological_region 163842 163850 0.999 + . logic_name=eponine scaffold_84 . biological_region 165071 165074 0.999 + . logic_name=eponine scaffold_84 . biological_region 165336 165337 0.999 + . logic_name=eponine scaffold_84 . biological_region 165405 165407 0.999 + . logic_name=eponine scaffold_84 . biological_region 165574 165577 0.999 + . logic_name=eponine scaffold_84 . biological_region 167388 167390 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 162247 163559 . - . ID=Physo140310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840037;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 162247 163559 . - . ID=Physo140310;Parent=Physo140310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 162247 163326 . - 0 ID=Physo140310;Parent=Physo140310;rank=1 scaffold_84 . exon 162247 163559 . - . ID=Physo140310.1;Parent=Physo140310;constitutive=1;ensembl_phase=-1;rank=1 scaffold_84 ensembl protein_coding_gene 163785 165671 . - . ID=Physo140311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840038;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 163785 165671 . - . ID=Physo140311;Parent=Physo140311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 163785 165671 . - 0 ID=Physo140311;Parent=Physo140311;rank=1 scaffold_84 . exon 163785 165671 . - . ID=Physo140311.1;Parent=Physo140311;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 166109 166612 . + . ID=Physo140312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840039;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 166109 166612 . + . ID=Physo140312;Parent=Physo140312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 166109 166612 . + 0 ID=Physo140312;Parent=Physo140312;rank=1 scaffold_84 . exon 166109 166612 . + . ID=Physo140312.1;Parent=Physo140312;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 167189 168238 . + . ID=Physo140313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840040;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 167189 168238 . + . ID=Physo140313;Parent=Physo140313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 167189 168238 . + 0 ID=Physo140313;Parent=Physo140313;rank=1 scaffold_84 . exon 167189 168238 . + . ID=Physo140313.1;Parent=Physo140313;constitutive=1;rank=1 scaffold_84 . repeat_region 168553 168596 . ? . description=trf scaffold_84 . repeat_region 169595 169632 . ? . description=dust scaffold_84 . repeat_region 175094 175128 . ? . description=dust scaffold_84 . repeat_region 175260 175292 . ? . description=dust scaffold_84 . repeat_region 175857 175864 . ? . description=dust scaffold_84 ensembl protein_coding_gene 169512 170853 . + . ID=Physo140314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840041;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 169512 170853 . + . ID=Physo140314;Parent=Physo140314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 169512 170853 . + . ID=Physo140314.1;Parent=Physo140314;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_84 . CDS 169587 170690 . + 0 ID=Physo140314;Parent=Physo140314;rank=1 scaffold_84 ensembl protein_coding_gene 171061 175016 . + . ID=Physo140315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840042;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 171061 175016 . + . ID=Physo140315;Parent=Physo140315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 171061 174582 . + 0 ID=Physo140315;Parent=Physo140315;rank=1 scaffold_84 . exon 171061 174582 . + . ID=Physo140315.1;Parent=Physo140315;constitutive=1;rank=1 scaffold_84 . CDS 174670 174969 . + 0 ID=Physo140315;Parent=Physo140315;rank=2 scaffold_84 . exon 174670 175016 . + . ID=Physo140315.2;Parent=Physo140315;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_84 ensembl protein_coding_gene 177172 178819 . + . ID=Physo140316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840043;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 177172 178819 . + . ID=Physo140316;Parent=Physo140316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 177172 177511 . + 0 ID=Physo140316;Parent=Physo140316;rank=1 scaffold_84 . exon 177172 177511 . + . ID=Physo140316.1;Parent=Physo140316;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 178014 178123 . + 0 ID=Physo140316;Parent=Physo140316;rank=2 scaffold_84 . CDS 178260 178625 . + 0 ID=Physo140316;Parent=Physo140316;rank=3 scaffold_84 . CDS 178693 178812 . + 0 ID=Physo140316;Parent=Physo140316;rank=4 scaffold_84 . biological_region 178338 178344 0.999 - . logic_name=eponine scaffold_84 . biological_region 179082 179082 0.999 - . logic_name=eponine scaffold_84 . biological_region 180252 180254 0.999 - . logic_name=eponine scaffold_84 . biological_region 180260 180264 0.999 - . logic_name=eponine scaffold_84 . biological_region 180570 180573 0.999 + . logic_name=eponine scaffold_84 . biological_region 180733 180736 0.999 - . logic_name=eponine scaffold_84 . biological_region 180995 180997 0.999 + . logic_name=eponine scaffold_84 . biological_region 181005 181006 0.999 - . logic_name=eponine scaffold_84 . biological_region 181057 181059 0.999 + . logic_name=eponine scaffold_84 . biological_region 181324 181326 0.999 + . logic_name=eponine scaffold_84 . biological_region 182100 182102 0.999 + . logic_name=eponine scaffold_84 . biological_region 182143 182147 0.999 + . logic_name=eponine scaffold_84 . biological_region 185031 185032 0.999 - . logic_name=eponine scaffold_84 . biological_region 185058 185061 0.999 - . logic_name=eponine scaffold_84 . exon 178014 178123 . + . ID=Physo140316.2;Parent=Physo140316;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . exon 178260 178625 . + . ID=Physo140316.3;Parent=Physo140316;constitutive=1;rank=3 scaffold_84 . exon 178693 178819 . + . ID=Physo140316.4;Parent=Physo140316;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_84 ensembl protein_coding_gene 179198 180483 . - . ID=Physo140317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840044;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 179198 180483 . - . ID=Physo140317;Parent=Physo140317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 179198 180483 . - . ID=Physo140317.1;Parent=Physo140317;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_84 . CDS 179277 180356 . - 0 ID=Physo140317;Parent=Physo140317;rank=1 scaffold_84 ensembl protein_coding_gene 182093 191033 . + . ID=Physo158132;biotype=protein_coding;description=Cellulose synthase 3 [Source:UniProtKB/TrEMBL%3BAcc:A5A5Z9];external_name=CES3;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 182093 191033 . + . ID=Physo158132;Parent=Physo158132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 182093 182235 . + 0 ID=Physo158132;Parent=Physo158132;rank=1 scaffold_84 . exon 182093 182235 . + . ID=Physo158132.1;Parent=Physo158132;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 182379 184324 . + 0 ID=Physo158132;Parent=Physo158132;rank=2 scaffold_84 . exon 182379 184324 . + . ID=Physo158132.2;Parent=Physo158132;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 184355 184645 . + 0 ID=Physo158132;Parent=Physo158132;rank=3 scaffold_84 . exon 184355 184645 . + . ID=Physo158132.3;Parent=Physo158132;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 184715 185562 . + 0 ID=Physo158132;Parent=Physo158132;rank=4 scaffold_84 . exon 184715 185562 . + . ID=Physo158132.4;Parent=Physo158132;constitutive=1;ensembl_phase=1;rank=4 scaffold_84 . CDS 185587 185638 . + 0 ID=Physo158132;Parent=Physo158132;rank=5 scaffold_84 . exon 185587 185638 . + . ID=Physo158132.5;Parent=Physo158132;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_84 . CDS 186019 186157 . + 0 ID=Physo158132;Parent=Physo158132;rank=6 scaffold_84 . exon 186019 186157 . + . ID=Physo158132.6;Parent=Physo158132;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_84 . CDS 186227 188523 . + 0 ID=Physo158132;Parent=Physo158132;rank=7 scaffold_84 . exon 186227 188523 . + . ID=Physo158132.7;Parent=Physo158132;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_84 . CDS 188566 189283 . + 0 ID=Physo158132;Parent=Physo158132;rank=8 scaffold_84 . CDS 189433 190068 . + 0 ID=Physo158132;Parent=Physo158132;rank=9 scaffold_84 . CDS 190162 190250 . + 0 ID=Physo158132;Parent=Physo158132;rank=10 scaffold_84 . CDS 190324 190961 . + 0 ID=Physo158132;Parent=Physo158132;rank=11 scaffold_84 . CDS 191007 191033 . + 0 ID=Physo158132;Parent=Physo158132;rank=12 scaffold_84 . repeat_region 196775 196783 . ? . description=dust scaffold_84 . repeat_region 196933 196982 . ? . description=dust scaffold_84 ensembl protein_coding_gene 191406 193156 . - . ID=Physo140319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840046;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 191406 193156 . - . ID=Physo140319;Parent=Physo140319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 191406 191428 . - 0 ID=Physo140319;Parent=Physo140319;rank=2 scaffold_84 . exon 191406 191428 . - . ID=Physo140319.2;Parent=Physo140319;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 191602 193156 . - 0 ID=Physo140319;Parent=Physo140319;rank=1 scaffold_84 . exon 191602 193156 . - . ID=Physo140319.1;Parent=Physo140319;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 ensembl protein_coding_gene 193297 194715 . + . ID=Physo140320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840047;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 193297 194715 . + . ID=Physo140320;Parent=Physo140320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 193297 194715 . + 0 ID=Physo140320;Parent=Physo140320;rank=1 scaffold_84 . exon 193297 194715 . + . ID=Physo140320.1;Parent=Physo140320;constitutive=1;rank=1 scaffold_84 . exon 188566 189283 . + . ID=Physo158132.8;Parent=Physo158132;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_84 . exon 189433 190068 . + . ID=Physo158132.9;Parent=Physo158132;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_84 . exon 190162 190250 . + . ID=Physo158132.10;Parent=Physo158132;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_84 . exon 190324 190961 . + . ID=Physo158132.11;Parent=Physo158132;constitutive=1;ensembl_phase=1;rank=11 scaffold_84 . exon 191007 191033 . + . ID=Physo158132.12;Parent=Physo158132;constitutive=1;rank=12 scaffold_84 . biological_region 203157 203158 0.999 + . logic_name=eponine scaffold_84 . repeat_region 203491 203518 . ? . description=trf scaffold_84 . biological_region 205728 205732 0.999 + . logic_name=eponine scaffold_84 . biological_region 206053 206056 0.999 - . logic_name=eponine scaffold_84 . biological_region 206085 206090 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 200698 201582 . + . ID=Physo140321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840048;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 200698 201582 . + . ID=Physo140321;Parent=Physo140321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 200698 201582 . + 0 ID=Physo140321;Parent=Physo140321;rank=1 scaffold_84 . exon 200698 201582 . + . ID=Physo140321.1;Parent=Physo140321;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 202370 203236 . - . ID=Physo140322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840049;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 202370 203236 . - . ID=Physo140322;Parent=Physo140322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 202370 203008 . - 0 ID=Physo140322;Parent=Physo140322;rank=2 scaffold_84 . exon 202370 203008 . - . ID=Physo140322.2;Parent=Physo140322;constitutive=1;rank=2 scaffold_84 . CDS 203078 203236 . - 0 ID=Physo140322;Parent=Physo140322;rank=1 scaffold_84 . exon 203078 203236 . - . ID=Physo140322.1;Parent=Physo140322;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 203983 206154 . - . ID=Physo140323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840050;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 203983 206154 . - . ID=Physo140323;Parent=Physo140323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 203983 206154 . - 0 ID=Physo140323;Parent=Physo140323;rank=1 scaffold_84 . exon 203983 206154 . - . ID=Physo140323.1;Parent=Physo140323;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 206851 207460 . + . ID=Physo140324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840051;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 206851 207460 . + . ID=Physo140324;Parent=Physo140324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 206851 207020 . + 0 ID=Physo140324;Parent=Physo140324;rank=1 scaffold_84 . exon 206851 207020 . + . ID=Physo140324.1;Parent=Physo140324;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 207096 207173 . + 0 ID=Physo140324;Parent=Physo140324;rank=2 scaffold_84 . exon 207096 207173 . + . ID=Physo140324.2;Parent=Physo140324;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_84 . CDS 207262 207460 . + 0 ID=Physo140324;Parent=Physo140324;rank=3 scaffold_84 . exon 207262 207460 . + . ID=Physo140324.3;Parent=Physo140324;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 ensembl protein_coding_gene 207594 208592 . - . ID=Physo140325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840052;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 207594 208592 . - . ID=Physo140325;Parent=Physo140325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 207594 208592 . - 0 ID=Physo140325;Parent=Physo140325;rank=1 scaffold_84 . exon 207594 208592 . - . ID=Physo140325.1;Parent=Physo140325;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 210162 212774 . - . ID=Physo140326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840053;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 210162 212774 . - . ID=Physo140326;Parent=Physo140326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 210162 210275 . - 0 ID=Physo140326;Parent=Physo140326;rank=4 scaffold_84 . exon 210162 210275 . - . ID=Physo140326.4;Parent=Physo140326;constitutive=1;rank=4 scaffold_84 . CDS 210337 210888 . - 0 ID=Physo140326;Parent=Physo140326;rank=3 scaffold_84 . exon 210337 210888 . - . ID=Physo140326.3;Parent=Physo140326;constitutive=1;rank=3 scaffold_84 . CDS 210959 211983 . - 0 ID=Physo140326;Parent=Physo140326;rank=2 scaffold_84 . exon 210959 211983 . - . ID=Physo140326.2;Parent=Physo140326;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 212159 212774 . - 0 ID=Physo140326;Parent=Physo140326;rank=1 scaffold_84 . exon 212159 212774 . - . ID=Physo140326.1;Parent=Physo140326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 ensembl protein_coding_gene 213452 215454 . + . ID=Physo140327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840054;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 213452 215454 . + . ID=Physo140327;Parent=Physo140327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 213452 213460 . + 0 ID=Physo140327;Parent=Physo140327;rank=1 scaffold_84 . exon 213452 213460 . + . ID=Physo140327.1;Parent=Physo140327;constitutive=1;rank=1 scaffold_84 . CDS 213552 214429 . + 0 ID=Physo140327;Parent=Physo140327;rank=2 scaffold_84 . exon 213552 214429 . + . ID=Physo140327.2;Parent=Physo140327;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_84 . CDS 214510 215302 . + 0 ID=Physo140327;Parent=Physo140327;rank=3 scaffold_84 . exon 214510 215454 . + . ID=Physo140327.3;Parent=Physo140327;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_84 . repeat_region 217634 217641 . ? . description=dust scaffold_84 . biological_region 222462 222466 0.999 - . logic_name=eponine scaffold_84 . repeat_region 224284 224291 . ? . description=dust scaffold_84 ensembl protein_coding_gene 218284 220286 . + . ID=Physo140328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840055;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 218284 220286 . + . ID=Physo140328;Parent=Physo140328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 218284 218979 . + 0 ID=Physo140328;Parent=Physo140328;rank=1 scaffold_84 . exon 218284 218979 . + . ID=Physo140328.1;Parent=Physo140328;constitutive=1;rank=1 scaffold_84 . CDS 219029 219101 . + 0 ID=Physo140328;Parent=Physo140328;rank=2 scaffold_84 . exon 219029 219101 . + . ID=Physo140328.2;Parent=Physo140328;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_84 . CDS 219356 219528 . + 0 ID=Physo140328;Parent=Physo140328;rank=3 scaffold_84 . exon 219356 219528 . + . ID=Physo140328.3;Parent=Physo140328;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 219654 219899 . + 0 ID=Physo140328;Parent=Physo140328;rank=4 scaffold_84 . exon 219654 219899 . + . ID=Physo140328.4;Parent=Physo140328;constitutive=1;rank=4 scaffold_84 . CDS 219966 220286 . + 0 ID=Physo140328;Parent=Physo140328;rank=5 scaffold_84 . exon 219966 220286 . + . ID=Physo140328.5;Parent=Physo140328;constitutive=1;rank=5 scaffold_84 ensembl protein_coding_gene 225646 226405 . - . ID=Physo140329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840056;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 225646 226405 . - . ID=Physo140329;Parent=Physo140329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 225646 225904 . - 0 ID=Physo140329;Parent=Physo140329;rank=2 scaffold_84 . exon 225646 225904 . - . ID=Physo140329.2;Parent=Physo140329;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 225972 226405 . - 0 ID=Physo140329;Parent=Physo140329;rank=1 scaffold_84 . exon 225972 226405 . - . ID=Physo140329.1;Parent=Physo140329;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . repeat_region 232896 232925 . ? . description=trf scaffold_84 . repeat_region 232948 232967 . ? . description=trf scaffold_84 ensembl protein_coding_gene 231786 233093 . - . ID=Physo140330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840057;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 231786 233093 . - . ID=Physo140330;Parent=Physo140330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 231786 233093 . - 0 ID=Physo140330;Parent=Physo140330;rank=1 scaffold_84 . exon 231786 233093 . - . ID=Physo140330.1;Parent=Physo140330;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 234497 237331 . - . ID=Physo140331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840058;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 234497 237331 . - . ID=Physo140331;Parent=Physo140331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 234497 237331 . - 0 ID=Physo140331;Parent=Physo140331;rank=1 scaffold_84 . exon 234497 237331 . - . ID=Physo140331.1;Parent=Physo140331;constitutive=1;rank=1 scaffold_84 . biological_region 237111 237114 0.999 - . logic_name=eponine scaffold_84 . biological_region 237888 237895 0.999 + . logic_name=eponine scaffold_84 . biological_region 237944 237947 0.999 - . logic_name=eponine scaffold_84 . biological_region 237999 238002 0.999 + . logic_name=eponine scaffold_84 . biological_region 238062 238067 0.999 - . logic_name=eponine scaffold_84 . biological_region 240112 240117 0.999 + . logic_name=eponine scaffold_84 . biological_region 240209 240213 0.999 + . logic_name=eponine scaffold_84 . repeat_region 240435 240448 . ? . description=dust scaffold_84 . biological_region 245696 245698 0.999 + . logic_name=eponine scaffold_84 ensembl protein_coding_gene 237892 238596 . - . ID=Physo140332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840059;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 237892 238596 . - . ID=Physo140332;Parent=Physo140332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 237892 238596 . - 0 ID=Physo140332;Parent=Physo140332;rank=1 scaffold_84 . exon 237892 238596 . - . ID=Physo140332.1;Parent=Physo140332;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 239291 240424 . - . ID=Physo140333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840060;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 239291 240424 . - . ID=Physo140333;Parent=Physo140333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 239291 240424 . - 0 ID=Physo140333;Parent=Physo140333;rank=1 scaffold_84 . exon 239291 240424 . - . ID=Physo140333.1;Parent=Physo140333;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 245589 247344 . + . ID=Physo140334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840061;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 245589 247344 . + . ID=Physo140334;Parent=Physo140334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 245589 246251 . + 0 ID=Physo140334;Parent=Physo140334;rank=1 scaffold_84 . exon 245589 246251 . + . ID=Physo140334.1;Parent=Physo140334;constitutive=1;rank=1 scaffold_84 . CDS 246339 246455 . + 0 ID=Physo140334;Parent=Physo140334;rank=2 scaffold_84 . CDS 246529 247344 . + 0 ID=Physo140334;Parent=Physo140334;rank=3 scaffold_84 ensembl protein_coding_gene 247467 248748 . - . ID=Physo109282;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_840004;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 247467 248748 . - . ID=Physo109282;Parent=Physo109282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 247467 248114 . - 0 ID=Physo109282;Parent=Physo109282;rank=3 scaffold_84 . exon 247467 248114 . - . ID=Physo109282.3;Parent=Physo109282;constitutive=1;rank=3 scaffold_84 . CDS 248163 248460 . - 0 ID=Physo109282;Parent=Physo109282;rank=2 scaffold_84 . exon 248163 248460 . - . ID=Physo109282.2;Parent=Physo109282;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 248538 248731 . - 0 ID=Physo109282;Parent=Physo109282;rank=1 scaffold_84 . exon 248538 248748 . - . ID=Physo109282.1;Parent=Physo109282;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_84 ensembl protein_coding_gene 249329 250016 . - . ID=Physo120965;biotype=protein_coding;external_name=estExt_Genewise1.C_840065;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 249329 250016 . - . ID=Physo120965;Parent=Physo120965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 249329 249742 . - . ID=Physo120965.2;Parent=Physo120965;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_84 . CDS 249345 249742 . - 0 ID=Physo120965;Parent=Physo120965;rank=2 scaffold_84 . CDS 249810 250014 . - 0 ID=Physo120965;Parent=Physo120965;rank=1 scaffold_84 . exon 249810 250016 . - . ID=Physo120965.1;Parent=Physo120965;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_84 . exon 246339 246455 . + . ID=Physo140334.2;Parent=Physo140334;constitutive=1;rank=2 scaffold_84 . exon 246529 247344 . + . ID=Physo140334.3;Parent=Physo140334;constitutive=1;rank=3 scaffold_84 ensembl protein_coding_gene 253498 255696 . - . ID=Physo140337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840064;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 253498 255696 . - . ID=Physo140337;Parent=Physo140337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 253498 255328 . - . ID=Physo140337.2;Parent=Physo140337;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_84 . CDS 253558 255328 . - 0 ID=Physo140337;Parent=Physo140337;rank=2 scaffold_84 . CDS 255413 255696 . - 0 ID=Physo140337;Parent=Physo140337;rank=1 scaffold_84 . exon 255413 255696 . - . ID=Physo140337.1;Parent=Physo140337;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 ensembl protein_coding_gene 255941 257537 . + . ID=Physo140338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840065;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 255941 257537 . + . ID=Physo140338;Parent=Physo140338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 255941 256909 . + 0 ID=Physo140338;Parent=Physo140338;rank=1 scaffold_84 . exon 255941 256909 . + . ID=Physo140338.1;Parent=Physo140338;constitutive=1;rank=1 scaffold_84 . CDS 256995 257137 . + 0 ID=Physo140338;Parent=Physo140338;rank=2 scaffold_84 . CDS 257213 257537 . + 0 ID=Physo140338;Parent=Physo140338;rank=3 scaffold_84 . biological_region 256076 256080 0.999 - . logic_name=eponine scaffold_84 . biological_region 256120 256122 0.999 - . logic_name=eponine scaffold_84 . repeat_region 260023 260055 . ? . description=trf scaffold_84 . biological_region 262647 262648 0.999 - . logic_name=eponine scaffold_84 . exon 256995 257137 . + . ID=Physo140338.2;Parent=Physo140338;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_84 . exon 257213 257537 . + . ID=Physo140338.3;Parent=Physo140338;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 ensembl protein_coding_gene 258164 258868 . + . ID=Physo140339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840066;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 258164 258868 . + . ID=Physo140339;Parent=Physo140339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 258164 258868 . + 0 ID=Physo140339;Parent=Physo140339;rank=1 scaffold_84 . exon 258164 258868 . + . ID=Physo140339.1;Parent=Physo140339;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 258993 259717 . + . ID=Physo140340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840067;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 258993 259717 . + . ID=Physo140340;Parent=Physo140340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 258993 259109 . + 0 ID=Physo140340;Parent=Physo140340;rank=1 scaffold_84 . exon 258993 259109 . + . ID=Physo140340.1;Parent=Physo140340;constitutive=1;rank=1 scaffold_84 . CDS 259188 259289 . + 0 ID=Physo140340;Parent=Physo140340;rank=2 scaffold_84 . exon 259188 259289 . + . ID=Physo140340.2;Parent=Physo140340;constitutive=1;rank=2 scaffold_84 . CDS 259366 259464 . + 0 ID=Physo140340;Parent=Physo140340;rank=3 scaffold_84 . exon 259366 259464 . + . ID=Physo140340.3;Parent=Physo140340;constitutive=1;rank=3 scaffold_84 . CDS 259520 259717 . + 0 ID=Physo140340;Parent=Physo140340;rank=4 scaffold_84 . exon 259520 259717 . + . ID=Physo140340.4;Parent=Physo140340;constitutive=1;rank=4 scaffold_84 ensembl protein_coding_gene 259710 267329 . - . ID=Physo140341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840068;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 259710 267329 . - . ID=Physo140341;Parent=Physo140341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 259710 267329 . - . ID=Physo140341.1;Parent=Physo140341;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_84 . CDS 259821 267329 . - 0 ID=Physo140341;Parent=Physo140341;rank=1 scaffold_84 . repeat_region 267013 267102 . + . description=(CTG)n scaffold_84 . repeat_region 275089 275136 . ? . description=dust scaffold_84 ensembl protein_coding_gene 271390 272386 . - . ID=Physo120969;biotype=protein_coding;external_name=estExt_Genewise1.C_840069;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 271390 272386 . - . ID=Physo120969;Parent=Physo120969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 271390 272196 . - 0 ID=Physo120969;Parent=Physo120969;rank=2 scaffold_84 . exon 271390 272196 . - . ID=Physo120969.2;Parent=Physo120969;constitutive=1;rank=2 scaffold_84 . CDS 272282 272314 . - 0 ID=Physo120969;Parent=Physo120969;rank=1 scaffold_84 . exon 272282 272386 . - . ID=Physo120969.1;Parent=Physo120969;constitutive=1;ensembl_phase=-1;rank=1 scaffold_84 ensembl protein_coding_gene 268609 269949 . + . ID=Physo140342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840069;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 268609 269949 . + . ID=Physo140342;Parent=Physo140342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 268609 269949 . + 0 ID=Physo140342;Parent=Physo140342;rank=1 scaffold_84 . exon 268609 269949 . + . ID=Physo140342.1;Parent=Physo140342;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 270187 271167 . - . ID=Physo140343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840070;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 270187 271167 . - . ID=Physo140343;Parent=Physo140343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 270187 271167 . - 0 ID=Physo140343;Parent=Physo140343;rank=1 scaffold_84 . exon 270187 271167 . - . ID=Physo140343.1;Parent=Physo140343;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 274225 275121 . - . ID=Physo140345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840072;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 274225 275121 . - . ID=Physo140345;Parent=Physo140345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 274225 275121 . - 0 ID=Physo140345;Parent=Physo140345;rank=1 scaffold_84 . exon 274225 275121 . - . ID=Physo140345.1;Parent=Physo140345;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 275512 276498 . - . ID=Physo140346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840073;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 275512 276498 . - . ID=Physo140346;Parent=Physo140346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 275512 276498 . - 0 ID=Physo140346;Parent=Physo140346;rank=1 scaffold_84 . exon 275512 276498 . - . ID=Physo140346.1;Parent=Physo140346;constitutive=1;rank=1 scaffold_84 . biological_region 276896 276897 0.999 + . logic_name=eponine scaffold_84 . biological_region 278248 278251 0.999 + . logic_name=eponine scaffold_84 . biological_region 278264 278269 0.999 + . logic_name=eponine scaffold_84 . biological_region 278303 278305 0.999 - . logic_name=eponine scaffold_84 . repeat_region 278733 278756 . ? . description=trf scaffold_84 . biological_region 279836 279837 0.999 + . logic_name=eponine scaffold_84 . repeat_region 279872 279905 . ? . description=trf scaffold_84 . biological_region 280229 280233 0.999 - . logic_name=eponine scaffold_84 . biological_region 280889 280890 0.999 - . logic_name=eponine scaffold_84 . biological_region 280972 280976 0.999 + . logic_name=eponine scaffold_84 . repeat_region 282128 282147 . ? . description=trf scaffold_84 . repeat_region 282405 282448 . ? . description=trf scaffold_84 . repeat_region 282474 282500 . ? . description=trf scaffold_84 . biological_region 282710 282711 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 277335 278333 . + . ID=Physo109283;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_840005;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 277335 278333 . + . ID=Physo109283;Parent=Physo109283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 277335 277546 . + . ID=Physo109283.1;Parent=Physo109283;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_84 . exon 277580 277811 . + . ID=Physo109283.2;Parent=Physo109283;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_84 . CDS 277754 277811 . + 0 ID=Physo109283;Parent=Physo109283;rank=1 scaffold_84 . CDS 278074 278087 . + 0 ID=Physo109283;Parent=Physo109283;rank=2 scaffold_84 . exon 278074 278087 . + . ID=Physo109283.3;Parent=Physo109283;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 278130 278333 . + 0 ID=Physo109283;Parent=Physo109283;rank=3 scaffold_84 . exon 278130 278333 . + . ID=Physo109283.4;Parent=Physo109283;constitutive=1;rank=4 scaffold_84 ensembl protein_coding_gene 278724 279619 . + . ID=Physo140348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840075;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 278724 279619 . + . ID=Physo140348;Parent=Physo140348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 278724 279048 . + 0 ID=Physo140348;Parent=Physo140348;rank=1 scaffold_84 . exon 278724 279048 . + . ID=Physo140348.1;Parent=Physo140348;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 279234 279619 . + 0 ID=Physo140348;Parent=Physo140348;rank=2 scaffold_84 . exon 279234 279619 . + . ID=Physo140348.2;Parent=Physo140348;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 ensembl protein_coding_gene 279811 281406 . + . ID=Physo140349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840076;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 279811 281406 . + . ID=Physo140349;Parent=Physo140349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 279811 281406 . + 0 ID=Physo140349;Parent=Physo140349;rank=1 scaffold_84 . exon 279811 281406 . + . ID=Physo140349.1;Parent=Physo140349;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 281520 282827 . - . ID=Physo140350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840077;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 281520 282827 . - . ID=Physo140350;Parent=Physo140350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 281520 282827 . - 0 ID=Physo140350;Parent=Physo140350;rank=1 scaffold_84 . exon 281520 282827 . - . ID=Physo140350.1;Parent=Physo140350;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 283057 284478 . + . ID=Physo140351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840078;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 283057 284478 . + . ID=Physo140351;Parent=Physo140351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 283057 284478 . + 0 ID=Physo140351;Parent=Physo140351;rank=1 scaffold_84 . exon 283057 284478 . + . ID=Physo140351.1;Parent=Physo140351;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 284897 285880 . + . ID=Physo140352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840079;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 284897 285880 . + . ID=Physo140352;Parent=Physo140352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 284897 285880 . + 0 ID=Physo140352;Parent=Physo140352;rank=1 scaffold_84 . exon 284897 285880 . + . ID=Physo140352.1;Parent=Physo140352;constitutive=1;rank=1 scaffold_84 . repeat_region 293263 293290 . ? . description=dust scaffold_84 ensembl protein_coding_gene 292624 293254 . - . ID=Physo109284;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_840006;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 292624 293254 . - . ID=Physo109284;Parent=Physo109284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 292624 293104 . - 0 ID=Physo109284;Parent=Physo109284;rank=2 scaffold_84 . exon 292624 293104 . - . ID=Physo109284.2;Parent=Physo109284;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 . CDS 293184 293254 . - 0 ID=Physo109284;Parent=Physo109284;rank=1 scaffold_84 . exon 293184 293254 . - . ID=Physo109284.1;Parent=Physo109284;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 ensembl protein_coding_gene 285981 286415 . + . ID=Physo140353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840080;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 285981 286415 . + . ID=Physo140353;Parent=Physo140353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 285981 286415 . + 0 ID=Physo140353;Parent=Physo140353;rank=1 scaffold_84 . exon 285981 286415 . + . ID=Physo140353.1;Parent=Physo140353;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 287158 289480 . + . ID=Physo140354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840081;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 287158 289480 . + . ID=Physo140354;Parent=Physo140354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 287158 288689 . + 0 ID=Physo140354;Parent=Physo140354;rank=1 scaffold_84 . exon 287158 288689 . + . ID=Physo140354.1;Parent=Physo140354;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 288904 289480 . + 0 ID=Physo140354;Parent=Physo140354;rank=2 scaffold_84 . exon 288904 289480 . + . ID=Physo140354.2;Parent=Physo140354;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 ensembl protein_coding_gene 290156 290867 . + . ID=Physo140355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840082;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 290156 290867 . + . ID=Physo140355;Parent=Physo140355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 290156 290502 . + 0 ID=Physo140355;Parent=Physo140355;rank=1 scaffold_84 . exon 290156 290502 . + . ID=Physo140355.1;Parent=Physo140355;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_84 . CDS 290693 290867 . + 0 ID=Physo140355;Parent=Physo140355;rank=2 scaffold_84 . exon 290693 290867 . + . ID=Physo140355.2;Parent=Physo140355;constitutive=1;ensembl_phase=2;rank=2 scaffold_84 ensembl protein_coding_gene 290905 292386 . - . ID=Physo140356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840083;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 290905 292386 . - . ID=Physo140356;Parent=Physo140356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 290905 291305 . - . ID=Physo140356.4;Parent=Physo140356;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_84 . CDS 291068 291305 . - 0 ID=Physo140356;Parent=Physo140356;rank=4 scaffold_84 . CDS 291390 291786 . - 0 ID=Physo140356;Parent=Physo140356;rank=3 scaffold_84 . exon 291390 291786 . - . ID=Physo140356.3;Parent=Physo140356;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_84 . CDS 291872 291983 . - 0 ID=Physo140356;Parent=Physo140356;rank=2 scaffold_84 . exon 291872 291983 . - . ID=Physo140356.2;Parent=Physo140356;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_84 . CDS 292072 292386 . - 0 ID=Physo140356;Parent=Physo140356;rank=1 scaffold_84 . exon 292072 292386 . - . ID=Physo140356.1;Parent=Physo140356;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 293406 295369 . - . ID=Physo140358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840085;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 293406 295369 . - . ID=Physo140358;Parent=Physo140358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 293406 293528 . - 0 ID=Physo140358;Parent=Physo140358;rank=5 scaffold_84 . exon 293406 293528 . - . ID=Physo140358.5;Parent=Physo140358;constitutive=1;rank=5 scaffold_84 . CDS 293601 293720 . - 0 ID=Physo140358;Parent=Physo140358;rank=4 scaffold_84 . exon 293601 293720 . - . ID=Physo140358.4;Parent=Physo140358;constitutive=1;rank=4 scaffold_84 . CDS 293797 294595 . - 0 ID=Physo140358;Parent=Physo140358;rank=3 scaffold_84 . exon 293797 294595 . - . ID=Physo140358.3;Parent=Physo140358;constitutive=1;ensembl_phase=2;rank=3 scaffold_84 . CDS 294664 295220 . - 0 ID=Physo140358;Parent=Physo140358;rank=2 scaffold_84 . exon 294664 295220 . - . ID=Physo140358.2;Parent=Physo140358;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_84 . CDS 295352 295369 . - 0 ID=Physo140358;Parent=Physo140358;rank=1 scaffold_84 . exon 295352 295369 . - . ID=Physo140358.1;Parent=Physo140358;constitutive=1;rank=1 scaffold_84 . biological_region 296749 296752 0.999 - . logic_name=eponine scaffold_84 . biological_region 296817 296821 0.999 - . logic_name=eponine scaffold_84 . biological_region 301862 301865 0.999 + . logic_name=eponine scaffold_84 . biological_region 301950 301957 0.999 - . logic_name=eponine scaffold_84 . biological_region 303813 303817 0.999 - . logic_name=eponine scaffold_84 . biological_region 303845 303846 0.999 - . logic_name=eponine scaffold_84 . biological_region 303899 303900 0.999 + . logic_name=eponine scaffold_84 . biological_region 303934 303935 0.999 + . logic_name=eponine scaffold_84 ensembl protein_coding_gene 295847 297204 . + . ID=Physo109285;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_840007;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 295847 297204 . + . ID=Physo109285;Parent=Physo109285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 295847 295850 . + 0 ID=Physo109285;Parent=Physo109285;rank=1 scaffold_84 . exon 295847 295850 . + . ID=Physo109285.1;Parent=Physo109285;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 295892 297204 . + 0 ID=Physo109285;Parent=Physo109285;rank=2 scaffold_84 . exon 295892 297204 . + . ID=Physo109285.2;Parent=Physo109285;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 ensembl protein_coding_gene 301456 304932 . + . ID=Physo140360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840087;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 301456 304932 . + . ID=Physo140360;Parent=Physo140360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 301456 303039 . + 0 ID=Physo140360;Parent=Physo140360;rank=1 scaffold_84 . exon 301456 303039 . + . ID=Physo140360.1;Parent=Physo140360;constitutive=1;rank=1 scaffold_84 . CDS 303115 304827 . + 0 ID=Physo140360;Parent=Physo140360;rank=2 scaffold_84 . exon 303115 304932 . + . ID=Physo140360.2;Parent=Physo140360;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_84 . repeat_region 305695 305744 . ? . description=dust scaffold_84 . repeat_region 305776 305790 . ? . description=dust scaffold_84 . repeat_region 311342 311375 . ? . description=trf scaffold_84 . repeat_region 315141 315180 . ? . description=trf scaffold_84 ensembl protein_coding_gene 306807 310601 . + . ID=Physo109286;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_840008;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 306807 310601 . + . ID=Physo109286;Parent=Physo109286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 306807 310601 . + 0 ID=Physo109286;Parent=Physo109286;rank=1 scaffold_84 . exon 306807 310601 . + . ID=Physo109286.1;Parent=Physo109286;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 311715 314066 . - . ID=Physo140362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840089;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 311715 314066 . - . ID=Physo140362;Parent=Physo140362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 311715 311759 . - 0 ID=Physo140362;Parent=Physo140362;rank=5 scaffold_84 . exon 311715 311759 . - . ID=Physo140362.5;Parent=Physo140362;constitutive=1;rank=5 scaffold_84 . CDS 312297 312848 . - 0 ID=Physo140362;Parent=Physo140362;rank=4 scaffold_84 . exon 312297 312848 . - . ID=Physo140362.4;Parent=Physo140362;constitutive=1;rank=4 scaffold_84 . CDS 312894 313051 . - 0 ID=Physo140362;Parent=Physo140362;rank=3 scaffold_84 . exon 312894 313051 . - . ID=Physo140362.3;Parent=Physo140362;constitutive=1;ensembl_phase=1;rank=3 scaffold_84 . CDS 313172 313852 . - 0 ID=Physo140362;Parent=Physo140362;rank=2 scaffold_84 . exon 313172 313852 . - . ID=Physo140362.2;Parent=Physo140362;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 314021 314066 . - 0 ID=Physo140362;Parent=Physo140362;rank=1 scaffold_84 . exon 314021 314066 . - . ID=Physo140362.1;Parent=Physo140362;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . biological_region 321413 321413 0.999 + . logic_name=eponine scaffold_84 . biological_region 321513 321515 0.999 + . logic_name=eponine scaffold_84 . biological_region 321583 321586 0.999 - . logic_name=eponine scaffold_84 . biological_region 322454 322455 0.999 - . logic_name=eponine scaffold_84 . biological_region 322827 322831 0.999 - . logic_name=eponine scaffold_84 . biological_region 324051 324051 0.999 + . logic_name=eponine scaffold_84 . biological_region 324383 324385 0.999 - . logic_name=eponine scaffold_84 . biological_region 324421 324423 0.999 - . logic_name=eponine scaffold_84 ensembl protein_coding_gene 315987 317796 . + . ID=Physo140363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840090;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 315987 317796 . + . ID=Physo140363;Parent=Physo140363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 315987 316032 . + 0 ID=Physo140363;Parent=Physo140363;rank=1 scaffold_84 . exon 315987 316032 . + . ID=Physo140363.1;Parent=Physo140363;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 316282 316823 . + 0 ID=Physo140363;Parent=Physo140363;rank=2 scaffold_84 . exon 316282 316823 . + . ID=Physo140363.2;Parent=Physo140363;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 317172 317729 . + 0 ID=Physo140363;Parent=Physo140363;rank=3 scaffold_84 . exon 317172 317729 . + . ID=Physo140363.3;Parent=Physo140363;constitutive=1;rank=3 scaffold_84 . CDS 317761 317796 . + 0 ID=Physo140363;Parent=Physo140363;rank=4 scaffold_84 . exon 317761 317796 . + . ID=Physo140363.4;Parent=Physo140363;constitutive=1;rank=4 scaffold_84 ensembl protein_coding_gene 321137 322853 . - . ID=Physo140364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840091;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 321137 322853 . - . ID=Physo140364;Parent=Physo140364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 321137 321160 . - 0 ID=Physo140364;Parent=Physo140364;rank=4 scaffold_84 . exon 321137 321160 . - . ID=Physo140364.4;Parent=Physo140364;constitutive=1;rank=4 scaffold_84 . CDS 321274 321654 . - 0 ID=Physo140364;Parent=Physo140364;rank=3 scaffold_84 . exon 321274 321654 . - . ID=Physo140364.3;Parent=Physo140364;constitutive=1;rank=3 scaffold_84 . CDS 321943 322572 . - 0 ID=Physo140364;Parent=Physo140364;rank=2 scaffold_84 . exon 321943 322572 . - . ID=Physo140364.2;Parent=Physo140364;constitutive=1;rank=2 scaffold_84 . CDS 322710 322853 . - 0 ID=Physo140364;Parent=Physo140364;rank=1 scaffold_84 . exon 322710 322853 . - . ID=Physo140364.1;Parent=Physo140364;constitutive=1;rank=1 scaffold_84 . repeat_region 332969 333022 . ? . description=trf scaffold_84 . repeat_region 333172 333220 . ? . description=trf scaffold_84 . repeat_region 333425 333432 . ? . description=dust scaffold_84 . repeat_region 333711 333718 . ? . description=dust scaffold_84 . repeat_region 333927 333950 . ? . description=trf scaffold_84 ensembl protein_coding_gene 326557 328887 . + . ID=Physo120926;biotype=protein_coding;external_name=estExt_Genewise1.C_840026;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 326557 328887 . + . ID=Physo120926;Parent=Physo120926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . exon 326557 328887 . + . ID=Physo120926.1;Parent=Physo120926;constitutive=1;ensembl_phase=-1;rank=1 scaffold_84 . CDS 326617 328887 . + 0 ID=Physo120926;Parent=Physo120926;rank=1 scaffold_84 ensembl protein_coding_gene 329614 330840 . + . ID=Physo140368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840095;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 329614 330840 . + . ID=Physo140368;Parent=Physo140368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 329614 329859 . + 0 ID=Physo140368;Parent=Physo140368;rank=1 scaffold_84 . exon 329614 329859 . + . ID=Physo140368.1;Parent=Physo140368;constitutive=1;rank=1 scaffold_84 . CDS 329935 330045 . + 0 ID=Physo140368;Parent=Physo140368;rank=2 scaffold_84 . exon 329935 330045 . + . ID=Physo140368.2;Parent=Physo140368;constitutive=1;rank=2 scaffold_84 . CDS 330127 330840 . + 0 ID=Physo140368;Parent=Physo140368;rank=3 scaffold_84 . exon 330127 330840 . + . ID=Physo140368.3;Parent=Physo140368;constitutive=1;rank=3 scaffold_84 ensembl protein_coding_gene 331171 332475 . - . ID=Physo140369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840096;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 331171 332475 . - . ID=Physo140369;Parent=Physo140369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 331171 331884 . - 0 ID=Physo140369;Parent=Physo140369;rank=3 scaffold_84 . exon 331171 331884 . - . ID=Physo140369.3;Parent=Physo140369;constitutive=1;rank=3 scaffold_84 . CDS 331959 332069 . - 0 ID=Physo140369;Parent=Physo140369;rank=2 scaffold_84 . exon 331959 332069 . - . ID=Physo140369.2;Parent=Physo140369;constitutive=1;rank=2 scaffold_84 . CDS 332149 332475 . - 0 ID=Physo140369;Parent=Physo140369;rank=1 scaffold_84 . exon 332149 332475 . - . ID=Physo140369.1;Parent=Physo140369;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 334204 335609 . + . ID=Physo140370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840097;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 334204 335609 . + . ID=Physo140370;Parent=Physo140370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 334204 335209 . + 0 ID=Physo140370;Parent=Physo140370;rank=1 scaffold_84 . exon 334204 335209 . + . ID=Physo140370.1;Parent=Physo140370;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . CDS 335383 335609 . + 0 ID=Physo140370;Parent=Physo140370;rank=2 scaffold_84 . biological_region 335010 335013 0.999 - . logic_name=eponine scaffold_84 . exon 335383 335609 . + . ID=Physo140370.2;Parent=Physo140370;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . repeat_region 336369 344928 . ? . description=dust scaffold_84 . repeat_region 350730 352770 . ? . description=dust scaffold_84 ensembl protein_coding_gene 345341 346414 . - . ID=Physo140371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840098;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 345341 346414 . - . ID=Physo140371;Parent=Physo140371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 345341 346414 . - 0 ID=Physo140371;Parent=Physo140371;rank=1 scaffold_84 . exon 345341 346414 . - . ID=Physo140371.1;Parent=Physo140371;constitutive=1;rank=1 scaffold_84 ensembl protein_coding_gene 348443 350242 . + . ID=Physo140372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840099;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 348443 350242 . + . ID=Physo140372;Parent=Physo140372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 348443 348514 . + 0 ID=Physo140372;Parent=Physo140372;rank=1 scaffold_84 . exon 348443 348514 . + . ID=Physo140372.1;Parent=Physo140372;constitutive=1;rank=1 scaffold_84 . CDS 348591 349469 . + 0 ID=Physo140372;Parent=Physo140372;rank=2 scaffold_84 . exon 348591 349469 . + . ID=Physo140372.2;Parent=Physo140372;constitutive=1;rank=2 scaffold_84 . CDS 349533 349942 . + 0 ID=Physo140372;Parent=Physo140372;rank=3 scaffold_84 . exon 349533 349942 . + . ID=Physo140372.3;Parent=Physo140372;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_84 . CDS 350008 350149 . + 0 ID=Physo140372;Parent=Physo140372;rank=4 scaffold_84 . exon 350008 350149 . + . ID=Physo140372.4;Parent=Physo140372;constitutive=1;ensembl_phase=2;rank=4 scaffold_84 . CDS 350192 350242 . + 0 ID=Physo140372;Parent=Physo140372;rank=5 scaffold_84 . exon 350192 350242 . + . ID=Physo140372.5;Parent=Physo140372;constitutive=1;rank=5 scaffold_84 ensembl protein_coding_gene 353475 354669 . - . ID=Physo140373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840100;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 353475 354669 . - . ID=Physo140373;Parent=Physo140373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 353475 353938 . - 0 ID=Physo140373;Parent=Physo140373;rank=2 scaffold_84 . exon 353475 353938 . - . ID=Physo140373.2;Parent=Physo140373;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 353967 354669 . - 0 ID=Physo140373;Parent=Physo140373;rank=1 scaffold_84 . exon 353967 354669 . - . ID=Physo140373.1;Parent=Physo140373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_84 . biological_region 358983 358989 0.999 - . logic_name=eponine scaffold_84 . biological_region 360676 360678 0.999 + . logic_name=eponine scaffold_84 . biological_region 361407 361413 0.999 - . logic_name=eponine scaffold_84 . repeat_region 363478 363507 . ? . description=trf scaffold_84 . repeat_region 364035 364382 . ? . description=trf scaffold_84 ensembl protein_coding_gene 356653 359062 . - . ID=Physo140374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_840101;logic_name=jgi_physo1_1 scaffold_84 ensembl transcript 356653 359062 . - . ID=Physo140374;Parent=Physo140374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_84 . CDS 356653 357498 . - 0 ID=Physo140374;Parent=Physo140374;rank=4 scaffold_84 . exon 356653 357498 . - . ID=Physo140374.4;Parent=Physo140374;constitutive=1;rank=4 scaffold_84 . CDS 357689 357910 . - 0 ID=Physo140374;Parent=Physo140374;rank=3 scaffold_84 . exon 357689 357910 . - . ID=Physo140374.3;Parent=Physo140374;constitutive=1;rank=3 scaffold_84 . CDS 358128 358846 . - 0 ID=Physo140374;Parent=Physo140374;rank=2 scaffold_84 . exon 358128 358846 . - . ID=Physo140374.2;Parent=Physo140374;constitutive=1;ensembl_phase=1;rank=2 scaffold_84 . CDS 358942 359062 . - 0 ID=Physo140374;Parent=Physo140374;rank=1 scaffold_84 . exon 358942 359062 . - . ID=Physo140374.1;Parent=Physo140374;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_75 1 364586 scaffold_75 . repeat_region 6460 6526 . + . description=GypsyPi-1c_I-int scaffold_75 . biological_region 7126 7130 0.999 + . logic_name=eponine scaffold_75 . biological_region 7438 7442 0.999 + . logic_name=eponine scaffold_75 . biological_region 7461 7465 0.999 - . logic_name=eponine scaffold_75 . biological_region 7518 7520 0.999 + . logic_name=eponine scaffold_75 . biological_region 7604 7607 0.999 + . logic_name=eponine scaffold_75 . biological_region 7632 7633 0.999 - . logic_name=eponine scaffold_75 . biological_region 8690 8694 0.999 + . logic_name=eponine scaffold_75 . biological_region 9356 9359 0.999 + . logic_name=eponine scaffold_75 ensembl protein_coding_gene 7528 9958 . + . ID=Physo139504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750001;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 7528 9958 . + . ID=Physo139504;Parent=Physo139504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 7528 7843 . + 0 ID=Physo139504;Parent=Physo139504;rank=1 scaffold_75 . exon 7528 7843 . + . ID=Physo139504.1;Parent=Physo139504;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . CDS 8154 8197 . + 0 ID=Physo139504;Parent=Physo139504;rank=2 scaffold_75 . exon 8154 8197 . + . ID=Physo139504.2;Parent=Physo139504;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 8486 9469 . + 0 ID=Physo139504;Parent=Physo139504;rank=3 scaffold_75 . exon 8486 9469 . + . ID=Physo139504.3;Parent=Physo139504;constitutive=1;rank=3 scaffold_75 . CDS 9643 9699 . + 0 ID=Physo139504;Parent=Physo139504;rank=4 scaffold_75 . exon 9643 9699 . + . ID=Physo139504.4;Parent=Physo139504;constitutive=1;rank=4 scaffold_75 . CDS 9770 9958 . + 0 ID=Physo139504;Parent=Physo139504;rank=5 scaffold_75 . exon 9770 9958 . + . ID=Physo139504.5;Parent=Physo139504;constitutive=1;rank=5 scaffold_75 . repeat_region 12861 12987 . ? . description=dust scaffold_75 . repeat_region 16938 16987 . ? . description=dust scaffold_75 . repeat_region 18327 18376 . ? . description=dust scaffold_75 ensembl protein_coding_gene 10211 12558 . - . ID=Physo139505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750002;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 10211 12558 . - . ID=Physo139505;Parent=Physo139505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 10211 10217 . - 0 ID=Physo139505;Parent=Physo139505;rank=4 scaffold_75 . exon 10211 10217 . - . ID=Physo139505.4;Parent=Physo139505;constitutive=1;ensembl_phase=2;rank=4 scaffold_75 . CDS 10258 10745 . - 0 ID=Physo139505;Parent=Physo139505;rank=3 scaffold_75 . exon 10258 10745 . - . ID=Physo139505.3;Parent=Physo139505;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_75 . CDS 10933 11948 . - 0 ID=Physo139505;Parent=Physo139505;rank=2 scaffold_75 . exon 10933 11948 . - . ID=Physo139505.2;Parent=Physo139505;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 12057 12558 . - 0 ID=Physo139505;Parent=Physo139505;rank=1 scaffold_75 . exon 12057 12558 . - . ID=Physo139505.1;Parent=Physo139505;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 15734 19639 . + . ID=Physo139506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750003;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 15734 19639 . + . ID=Physo139506;Parent=Physo139506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 15734 16270 . + 0 ID=Physo139506;Parent=Physo139506;rank=1 scaffold_75 . exon 15734 16270 . + . ID=Physo139506.1;Parent=Physo139506;constitutive=1;rank=1 scaffold_75 . CDS 16353 16934 . + 0 ID=Physo139506;Parent=Physo139506;rank=2 scaffold_75 . exon 16353 16934 . + . ID=Physo139506.2;Parent=Physo139506;constitutive=1;rank=2 scaffold_75 . CDS 17754 17810 . + 0 ID=Physo139506;Parent=Physo139506;rank=3 scaffold_75 . exon 17754 17810 . + . ID=Physo139506.3;Parent=Physo139506;constitutive=1;rank=3 scaffold_75 . CDS 17941 18324 . + 0 ID=Physo139506;Parent=Physo139506;rank=4 scaffold_75 . exon 17941 18324 . + . ID=Physo139506.4;Parent=Physo139506;constitutive=1;rank=4 scaffold_75 . CDS 18416 18442 . + 0 ID=Physo139506;Parent=Physo139506;rank=5 scaffold_75 . exon 18416 18442 . + . ID=Physo139506.5;Parent=Physo139506;constitutive=1;rank=5 scaffold_75 . CDS 18479 18555 . + 0 ID=Physo139506;Parent=Physo139506;rank=6 scaffold_75 . exon 18479 18555 . + . ID=Physo139506.6;Parent=Physo139506;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_75 . CDS 18665 19477 . + 0 ID=Physo139506;Parent=Physo139506;rank=7 scaffold_75 . exon 18665 19477 . + . ID=Physo139506.7;Parent=Physo139506;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_75 . CDS 19576 19639 . + 0 ID=Physo139506;Parent=Physo139506;rank=8 scaffold_75 . exon 19576 19639 . + . ID=Physo139506.8;Parent=Physo139506;constitutive=1;ensembl_phase=2;rank=8 scaffold_75 . biological_region 20496 20496 0.999 + . logic_name=eponine scaffold_75 . biological_region 20532 20536 0.999 - . logic_name=eponine scaffold_75 . repeat_region 21330 21378 . ? . description=trf scaffold_75 . repeat_region 21485 21526 . ? . description=trf scaffold_75 . repeat_region 21858 21964 . ? . description=trf scaffold_75 . repeat_region 22918 23124 . ? . description=trf scaffold_75 . repeat_region 23171 23199 . ? . description=trf scaffold_75 . repeat_region 28047 29911 . ? . description=dust scaffold_75 . repeat_region 29923 30626 . + . description=Gypsy-2-I_PI-int scaffold_75 . repeat_region 31042 31607 . + . description=Gypsy-2-I_PI-int scaffold_75 . repeat_region 34435 34444 . ? . description=dust scaffold_75 ensembl protein_coding_gene 36947 37825 . + . ID=Physo139507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750004;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 36947 37825 . + . ID=Physo139507;Parent=Physo139507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 36947 37825 . + 0 ID=Physo139507;Parent=Physo139507;rank=1 scaffold_75 . exon 36947 37825 . + . ID=Physo139507.1;Parent=Physo139507;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 38575 39356 . + . ID=Physo157992;biotype=protein_coding;external_name=C_scaffold_75000001;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 38575 39356 . + . ID=Physo157992;Parent=Physo157992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 38575 38603 . + 0 ID=Physo157992;Parent=Physo157992;rank=1 scaffold_75 . exon 38575 38603 . + . ID=Physo157992.1;Parent=Physo157992;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . CDS 39003 39186 . + 0 ID=Physo157992;Parent=Physo157992;rank=2 scaffold_75 . exon 39003 39186 . + . ID=Physo157992.2;Parent=Physo157992;constitutive=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 39214 39282 . + 0 ID=Physo157992;Parent=Physo157992;rank=3 scaffold_75 . exon 39214 39282 . + . ID=Physo157992.3;Parent=Physo157992;constitutive=1;rank=3 scaffold_75 . CDS 39342 39356 . + 0 ID=Physo157992;Parent=Physo157992;rank=4 scaffold_75 . exon 39342 39356 . + . ID=Physo157992.4;Parent=Physo157992;constitutive=1;rank=4 scaffold_75 . biological_region 43899 43905 0.999 - . logic_name=eponine scaffold_75 . biological_region 45420 45423 0.999 + . logic_name=eponine scaffold_75 . biological_region 46266 46269 0.999 - . logic_name=eponine scaffold_75 . biological_region 46915 46920 0.999 - . logic_name=eponine scaffold_75 . biological_region 46971 46974 0.999 + . logic_name=eponine scaffold_75 . biological_region 47003 47005 0.999 + . logic_name=eponine scaffold_75 . biological_region 47270 47272 0.999 - . logic_name=eponine scaffold_75 . biological_region 47294 47297 0.999 + . logic_name=eponine scaffold_75 . biological_region 47324 47328 0.999 + . logic_name=eponine scaffold_75 . biological_region 47344 47349 0.999 + . logic_name=eponine scaffold_75 . repeat_region 48371 48395 . ? . description=trf scaffold_75 ensembl protein_coding_gene 40465 41958 . + . ID=Physo139508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750005;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 40465 41958 . + . ID=Physo139508;Parent=Physo139508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 40465 40542 . + 0 ID=Physo139508;Parent=Physo139508;rank=1 scaffold_75 . exon 40465 40542 . + . ID=Physo139508.1;Parent=Physo139508;constitutive=1;rank=1 scaffold_75 . CDS 40634 41230 . + 0 ID=Physo139508;Parent=Physo139508;rank=2 scaffold_75 . exon 40634 41230 . + . ID=Physo139508.2;Parent=Physo139508;constitutive=1;rank=2 scaffold_75 . CDS 41303 41518 . + 0 ID=Physo139508;Parent=Physo139508;rank=3 scaffold_75 . exon 41303 41518 . + . ID=Physo139508.3;Parent=Physo139508;constitutive=1;rank=3 scaffold_75 . CDS 41590 41892 . + 0 ID=Physo139508;Parent=Physo139508;rank=4 scaffold_75 . exon 41590 41892 . + . ID=Physo139508.4;Parent=Physo139508;constitutive=1;rank=4 scaffold_75 . CDS 41935 41958 . + 0 ID=Physo139508;Parent=Physo139508;rank=5 scaffold_75 . exon 41935 41958 . + . ID=Physo139508.5;Parent=Physo139508;constitutive=1;rank=5 scaffold_75 ensembl protein_coding_gene 42654 44084 . + . ID=Physo139509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750006;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 42654 44084 . + . ID=Physo139509;Parent=Physo139509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 42654 42687 . + 0 ID=Physo139509;Parent=Physo139509;rank=1 scaffold_75 . exon 42654 42687 . + . ID=Physo139509.1;Parent=Physo139509;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . CDS 42747 42933 . + 0 ID=Physo139509;Parent=Physo139509;rank=2 scaffold_75 . exon 42747 42933 . + . ID=Physo139509.2;Parent=Physo139509;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_75 . CDS 43022 43448 . + 0 ID=Physo139509;Parent=Physo139509;rank=3 scaffold_75 . exon 43022 43448 . + . ID=Physo139509.3;Parent=Physo139509;constitutive=1;ensembl_phase=2;rank=3 scaffold_75 . CDS 43479 44084 . + 0 ID=Physo139509;Parent=Physo139509;rank=4 scaffold_75 . exon 43479 44084 . + . ID=Physo139509.4;Parent=Physo139509;constitutive=1;rank=4 scaffold_75 ensembl protein_coding_gene 46145 48131 . + . ID=Physo139510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750007;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 46145 48131 . + . ID=Physo139510;Parent=Physo139510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 46145 47902 . + 0 ID=Physo139510;Parent=Physo139510;rank=1 scaffold_75 . exon 46145 47902 . + . ID=Physo139510.1;Parent=Physo139510;constitutive=1;rank=1 scaffold_75 . CDS 47979 48131 . + 0 ID=Physo139510;Parent=Physo139510;rank=2 scaffold_75 . exon 47979 48131 . + . ID=Physo139510.2;Parent=Physo139510;constitutive=1;rank=2 scaffold_75 ensembl protein_coding_gene 48819 49958 . - . ID=Physo139511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750008;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 48819 49958 . - . ID=Physo139511;Parent=Physo139511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 48819 49958 . - 0 ID=Physo139511;Parent=Physo139511;rank=1 scaffold_75 . exon 48819 49958 . - . ID=Physo139511.1;Parent=Physo139511;constitutive=1;rank=1 scaffold_75 . repeat_region 50994 51002 . ? . description=dust scaffold_75 . repeat_region 59075 59082 . ? . description=dust scaffold_75 ensembl protein_coding_gene 51009 52202 . + . ID=Physo139512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750009;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 51009 52202 . + . ID=Physo139512;Parent=Physo139512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 51009 51141 . + 0 ID=Physo139512;Parent=Physo139512;rank=1 scaffold_75 . exon 51009 51141 . + . ID=Physo139512.1;Parent=Physo139512;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . CDS 51207 51322 . + 0 ID=Physo139512;Parent=Physo139512;rank=2 scaffold_75 . exon 51207 51322 . + . ID=Physo139512.2;Parent=Physo139512;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 51399 52202 . + 0 ID=Physo139512;Parent=Physo139512;rank=3 scaffold_75 . exon 51399 52202 . + . ID=Physo139512.3;Parent=Physo139512;constitutive=1;rank=3 scaffold_75 ensembl protein_coding_gene 53465 55574 . - . ID=Physo139513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750010;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 53465 55574 . - . ID=Physo139513;Parent=Physo139513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 53465 53478 . - 0 ID=Physo139513;Parent=Physo139513;rank=2 scaffold_75 . exon 53465 53478 . - . ID=Physo139513.2;Parent=Physo139513;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 53549 55574 . - 0 ID=Physo139513;Parent=Physo139513;rank=1 scaffold_75 . exon 53549 55574 . - . ID=Physo139513.1;Parent=Physo139513;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 55815 56984 . - . ID=Physo139514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750011;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 55815 56984 . - . ID=Physo139514;Parent=Physo139514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 55815 56984 . - 0 ID=Physo139514;Parent=Physo139514;rank=1 scaffold_75 . exon 55815 56984 . - . ID=Physo139514.1;Parent=Physo139514;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 58124 59065 . - . ID=Physo139515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750012;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 58124 59065 . - . ID=Physo139515;Parent=Physo139515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 58124 59065 . - 0 ID=Physo139515;Parent=Physo139515;rank=1 scaffold_75 . exon 58124 59065 . - . ID=Physo139515.1;Parent=Physo139515;constitutive=1;rank=1 scaffold_75 . biological_region 59882 59885 0.999 + . logic_name=eponine scaffold_75 . biological_region 59912 59915 0.999 - . logic_name=eponine scaffold_75 . biological_region 59939 59941 0.999 + . logic_name=eponine scaffold_75 . biological_region 59964 59973 0.999 + . logic_name=eponine scaffold_75 . biological_region 59984 59987 0.999 - . logic_name=eponine scaffold_75 . biological_region 60244 60245 0.999 + . logic_name=eponine scaffold_75 . biological_region 63479 63480 0.999 + . logic_name=eponine scaffold_75 . repeat_region 64000 64021 . ? . description=trf scaffold_75 . biological_region 65940 65941 0.999 + . logic_name=eponine scaffold_75 . biological_region 67311 67314 0.999 + . logic_name=eponine scaffold_75 . biological_region 67390 67392 0.999 - . logic_name=eponine scaffold_75 . biological_region 67405 67406 0.999 - . logic_name=eponine scaffold_75 . biological_region 67717 67723 0.999 + . logic_name=eponine scaffold_75 . biological_region 67767 67769 0.999 - . logic_name=eponine scaffold_75 . biological_region 67793 67795 0.999 - . logic_name=eponine scaffold_75 . biological_region 68247 68251 0.999 - . logic_name=eponine scaffold_75 . repeat_region 68339 68643 . + . description=Polinton-1_PI scaffold_75 . repeat_region 68658 68856 . + . description=Polinton-1_PI scaffold_75 ensembl protein_coding_gene 64059 65138 . + . ID=Physo109219;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_750001;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 64059 65138 . + . ID=Physo109219;Parent=Physo109219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 64059 65063 . + 0 ID=Physo109219;Parent=Physo109219;rank=1 scaffold_75 . exon 64059 65138 . + . ID=Physo109219.1;Parent=Physo109219;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_75 ensembl protein_coding_gene 68469 69872 . + . ID=Physo109220;biotype=protein_coding;description=CRN115 protein [Source:UniProtKB/TrEMBL%3BAcc:E9M7A1];external_name=CRN115;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 68469 69872 . + . ID=Physo109220;Parent=Physo109220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 68469 69872 . + . ID=Physo109220.1;Parent=Physo109220;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_75 . CDS 68485 69825 . + 0 ID=Physo109220;Parent=Physo109220;rank=1 scaffold_75 ensembl protein_coding_gene 61019 63484 . - . ID=Physo139516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750013;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 61019 63484 . - . ID=Physo139516;Parent=Physo139516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 61019 61049 . - 0 ID=Physo139516;Parent=Physo139516;rank=2 scaffold_75 . exon 61019 61049 . - . ID=Physo139516.2;Parent=Physo139516;constitutive=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 61122 63484 . - 0 ID=Physo139516;Parent=Physo139516;rank=1 scaffold_75 . exon 61122 63484 . - . ID=Physo139516.1;Parent=Physo139516;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 ensembl protein_coding_gene 65848 67455 . - . ID=Physo139518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750015;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 65848 67455 . - . ID=Physo139518;Parent=Physo139518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 65848 65879 . - 0 ID=Physo139518;Parent=Physo139518;rank=4 scaffold_75 . exon 65848 65879 . - . ID=Physo139518.4;Parent=Physo139518;constitutive=1;ensembl_phase=1;rank=4 scaffold_75 . CDS 65921 66540 . - 0 ID=Physo139518;Parent=Physo139518;rank=3 scaffold_75 . exon 65921 66540 . - . ID=Physo139518.3;Parent=Physo139518;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_75 . CDS 66574 67187 . - 0 ID=Physo139518;Parent=Physo139518;rank=2 scaffold_75 . exon 66574 67187 . - . ID=Physo139518.2;Parent=Physo139518;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_75 . CDS 67261 67455 . - 0 ID=Physo139518;Parent=Physo139518;rank=1 scaffold_75 . exon 67261 67455 . - . ID=Physo139518.1;Parent=Physo139518;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 67649 68252 . + . ID=Physo139519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750016;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 67649 68252 . + . ID=Physo139519;Parent=Physo139519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 67649 68251 . + 0 ID=Physo139519;Parent=Physo139519;rank=1 scaffold_75 . exon 67649 68252 . + . ID=Physo139519.1;Parent=Physo139519;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_75 . repeat_region 76305 76313 . ? . description=dust scaffold_75 . repeat_region 69862 82187 . + . description=Polinton-1_PI scaffold_75 . repeat_region 82239 83201 . + . description=Polinton-1_PI scaffold_75 . repeat_region 83253 84138 . + . description=Polinton-1_PI scaffold_75 . repeat_region 84139 87132 . + . description=Polinton-1_PI scaffold_75 . biological_region 87192 87193 0.999 - . logic_name=eponine scaffold_75 . biological_region 88187 88191 0.999 + . logic_name=eponine scaffold_75 . biological_region 88376 88383 0.999 - . logic_name=eponine scaffold_75 . biological_region 88456 88458 0.999 - . logic_name=eponine scaffold_75 ensembl protein_coding_gene 87843 97265 . - . ID=Physo139521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750018;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 87843 97265 . - . ID=Physo139521;Parent=Physo139521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 87843 88517 . - 0 ID=Physo139521;Parent=Physo139521;rank=10 scaffold_75 . exon 87843 88517 . - . ID=Physo139521.10;Parent=Physo139521;constitutive=1;rank=10 scaffold_75 . CDS 92602 93162 . - 0 ID=Physo139521;Parent=Physo139521;rank=9 scaffold_75 . CDS 93182 94320 . - 0 ID=Physo139521;Parent=Physo139521;rank=8 scaffold_75 . CDS 94537 95419 . - 0 ID=Physo139521;Parent=Physo139521;rank=7 scaffold_75 . CDS 95678 95821 . - 0 ID=Physo139521;Parent=Physo139521;rank=6 scaffold_75 . CDS 95872 96555 . - 0 ID=Physo139521;Parent=Physo139521;rank=5 scaffold_75 . CDS 96626 96769 . - 0 ID=Physo139521;Parent=Physo139521;rank=4 scaffold_75 . CDS 96868 96993 . - 0 ID=Physo139521;Parent=Physo139521;rank=3 scaffold_75 . CDS 97066 97124 . - 0 ID=Physo139521;Parent=Physo139521;rank=2 scaffold_75 . CDS 97202 97265 . - 0 ID=Physo139521;Parent=Physo139521;rank=1 scaffold_75 . repeat_region 88555 92597 . ? . description=dust scaffold_75 . repeat_region 92617 92640 . ? . description=trf scaffold_75 . repeat_region 92699 93112 . ? . description=trf scaffold_75 . repeat_region 92795 92820 . ? . description=trf scaffold_75 . repeat_region 92881 92904 . ? . description=trf scaffold_75 . repeat_region 92900 94306 . ? . description=trf scaffold_75 . repeat_region 92996 93021 . ? . description=trf scaffold_75 . repeat_region 93082 93105 . ? . description=trf scaffold_75 . repeat_region 93252 93277 . ? . description=trf scaffold_75 . repeat_region 93338 93361 . ? . description=trf scaffold_75 . repeat_region 93516 93541 . ? . description=trf scaffold_75 . repeat_region 93602 93625 . ? . description=trf scaffold_75 . repeat_region 93780 93805 . ? . description=trf scaffold_75 . repeat_region 93866 93889 . ? . description=trf scaffold_75 . repeat_region 94044 94069 . ? . description=trf scaffold_75 . repeat_region 94130 94153 . ? . description=trf scaffold_75 . exon 92602 93162 . - . ID=Physo139521.9;Parent=Physo139521;constitutive=1;rank=9 scaffold_75 . exon 93182 94320 . - . ID=Physo139521.8;Parent=Physo139521;constitutive=1;ensembl_phase=1;rank=8 scaffold_75 . exon 94537 95419 . - . ID=Physo139521.7;Parent=Physo139521;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_75 . exon 95678 95821 . - . ID=Physo139521.6;Parent=Physo139521;constitutive=1;rank=6 scaffold_75 . exon 95872 96555 . - . ID=Physo139521.5;Parent=Physo139521;constitutive=1;rank=5 scaffold_75 . exon 96626 96769 . - . ID=Physo139521.4;Parent=Physo139521;constitutive=1;rank=4 scaffold_75 . exon 96868 96993 . - . ID=Physo139521.3;Parent=Physo139521;constitutive=1;rank=3 scaffold_75 . exon 97066 97124 . - . ID=Physo139521.2;Parent=Physo139521;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . exon 97202 97265 . - . ID=Physo139521.1;Parent=Physo139521;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 97727 99739 . - . ID=Physo139522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750019;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 97727 99739 . - . ID=Physo139522;Parent=Physo139522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 97727 99739 . - 0 ID=Physo139522;Parent=Physo139522;rank=1 scaffold_75 . exon 97727 99739 . - . ID=Physo139522.1;Parent=Physo139522;constitutive=1;rank=1 scaffold_75 . biological_region 100861 100864 0.999 + . logic_name=eponine scaffold_75 . biological_region 100934 100934 0.999 + . logic_name=eponine scaffold_75 . biological_region 104815 104818 0.999 - . logic_name=eponine scaffold_75 ensembl protein_coding_gene 101382 102564 . - . ID=Physo139523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750020;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 101382 102564 . - . ID=Physo139523;Parent=Physo139523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 101382 102563 . - 0 ID=Physo139523;Parent=Physo139523;rank=1 scaffold_75 . exon 101382 102564 . - . ID=Physo139523.1;Parent=Physo139523;constitutive=1;ensembl_phase=-1;rank=1 scaffold_75 . repeat_region 109031 109040 . ? . description=dust scaffold_75 . repeat_region 110383 110402 . ? . description=trf scaffold_75 . repeat_region 110819 110867 . ? . description=trf scaffold_75 ensembl protein_coding_gene 114122 115000 . - . ID=Physo109221;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_750003;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 114122 115000 . - . ID=Physo109221;Parent=Physo109221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 114122 115000 . - 0 ID=Physo109221;Parent=Physo109221;rank=1 scaffold_75 . exon 114122 115000 . - . ID=Physo109221.1;Parent=Physo109221;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 110527 111138 . + . ID=Physo139524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750021;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 110527 111138 . + . ID=Physo139524;Parent=Physo139524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 110527 111138 . + 0 ID=Physo139524;Parent=Physo139524;rank=1 scaffold_75 . exon 110527 111138 . + . ID=Physo139524.1;Parent=Physo139524;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 113139 113833 . + . ID=Physo139525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750022;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 113139 113833 . + . ID=Physo139525;Parent=Physo139525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 113139 113418 . + . ID=Physo139525.1;Parent=Physo139525;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_75 . CDS 113145 113418 . + 0 ID=Physo139525;Parent=Physo139525;rank=1 scaffold_75 . CDS 113507 113614 . + 0 ID=Physo139525;Parent=Physo139525;rank=2 scaffold_75 . exon 113507 113614 . + . ID=Physo139525.2;Parent=Physo139525;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 113691 113833 . + 0 ID=Physo139525;Parent=Physo139525;rank=3 scaffold_75 . exon 113691 113833 . + . ID=Physo139525.3;Parent=Physo139525;constitutive=1;ensembl_phase=1;rank=3 scaffold_75 ensembl protein_coding_gene 116196 117296 . + . ID=Physo139527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750024;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 116196 117296 . + . ID=Physo139527;Parent=Physo139527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 116196 117296 . + 0 ID=Physo139527;Parent=Physo139527;rank=1 scaffold_75 . exon 116196 117296 . + . ID=Physo139527.1;Parent=Physo139527;constitutive=1;rank=1 scaffold_75 . biological_region 119227 119229 0.999 + . logic_name=eponine scaffold_75 . biological_region 119265 119267 0.999 + . logic_name=eponine scaffold_75 . biological_region 119628 119631 0.999 + . logic_name=eponine scaffold_75 . biological_region 124221 124225 0.999 + . logic_name=eponine scaffold_75 . biological_region 124299 124305 0.999 + . logic_name=eponine scaffold_75 . biological_region 124321 124326 0.999 + . logic_name=eponine scaffold_75 . biological_region 124358 124361 0.999 - . logic_name=eponine scaffold_75 . biological_region 124520 124524 0.999 - . logic_name=eponine scaffold_75 . biological_region 124947 124952 0.999 - . logic_name=eponine scaffold_75 . biological_region 125316 125318 0.999 - . logic_name=eponine scaffold_75 . biological_region 125320 125323 0.999 + . logic_name=eponine scaffold_75 ensembl protein_coding_gene 118917 120515 . + . ID=Physo139528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750025;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 118917 120515 . + . ID=Physo139528;Parent=Physo139528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 118917 120515 . + 0 ID=Physo139528;Parent=Physo139528;rank=1 scaffold_75 . exon 118917 120515 . + . ID=Physo139528.1;Parent=Physo139528;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 122034 122729 . + . ID=Physo139529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750026;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 122034 122729 . + . ID=Physo139529;Parent=Physo139529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 122034 122729 . + 0 ID=Physo139529;Parent=Physo139529;rank=1 scaffold_75 . exon 122034 122729 . + . ID=Physo139529.1;Parent=Physo139529;constitutive=1;rank=1 scaffold_75 . repeat_region 128999 129039 . ? . description=trf scaffold_75 . repeat_region 129762 129795 . ? . description=dust scaffold_75 . repeat_region 129763 129793 . ? . description=trf scaffold_75 . repeat_region 130466 130473 . ? . description=dust scaffold_75 . repeat_region 135296 135368 . ? . description=trf scaffold_75 . repeat_region 135858 135880 . ? . description=dust scaffold_75 . repeat_region 135858 135880 . ? . description=trf scaffold_75 . repeat_region 137773 137947 . ? . description=trf scaffold_75 . repeat_region 137773 138011 . ? . description=trf scaffold_75 . repeat_region 137913 137953 . ? . description=trf scaffold_75 ensembl protein_coding_gene 130655 132830 . + . ID=Physo139530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750027;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 130655 132830 . + . ID=Physo139530;Parent=Physo139530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 130655 132628 . + 0 ID=Physo139530;Parent=Physo139530;rank=1 scaffold_75 . exon 130655 132830 . + . ID=Physo139530.1;Parent=Physo139530;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_75 ensembl protein_coding_gene 133140 137101 . - . ID=Physo139531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750028;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 133140 137101 . - . ID=Physo139531;Parent=Physo139531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 133140 134061 . - . ID=Physo139531.3;Parent=Physo139531;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_75 . CDS 133224 134061 . - 0 ID=Physo139531;Parent=Physo139531;rank=3 scaffold_75 . CDS 134117 134307 . - 0 ID=Physo139531;Parent=Physo139531;rank=2 scaffold_75 . exon 134117 134307 . - . ID=Physo139531.2;Parent=Physo139531;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_75 . CDS 134375 137101 . - 0 ID=Physo139531;Parent=Physo139531;rank=1 scaffold_75 . exon 134375 137101 . - . ID=Physo139531.1;Parent=Physo139531;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 137486 139924 . + . ID=Physo139532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750029;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 137486 139924 . + . ID=Physo139532;Parent=Physo139532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 137486 139924 . + 0 ID=Physo139532;Parent=Physo139532;rank=1 scaffold_75 . exon 137486 139924 . + . ID=Physo139532.1;Parent=Physo139532;constitutive=1;rank=1 scaffold_75 . biological_region 137976 137979 0.999 - . logic_name=eponine scaffold_75 . biological_region 138600 138601 0.999 + . logic_name=eponine scaffold_75 . biological_region 138958 138958 0.999 - . logic_name=eponine scaffold_75 . biological_region 141944 141947 0.999 + . logic_name=eponine scaffold_75 . biological_region 147521 147525 0.999 + . logic_name=eponine scaffold_75 ensembl protein_coding_gene 139992 140723 . - . ID=Physo139533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750030;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 139992 140723 . - . ID=Physo139533;Parent=Physo139533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 139992 140272 . - . ID=Physo139533.4;Parent=Physo139533;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_75 . CDS 140117 140272 . - 0 ID=Physo139533;Parent=Physo139533;rank=4 scaffold_75 . CDS 140374 140420 . - 0 ID=Physo139533;Parent=Physo139533;rank=3 scaffold_75 . exon 140374 140420 . - . ID=Physo139533.3;Parent=Physo139533;constitutive=1;ensembl_phase=1;rank=3 scaffold_75 . CDS 140495 140541 . - 0 ID=Physo139533;Parent=Physo139533;rank=2 scaffold_75 . exon 140495 140541 . - . ID=Physo139533.2;Parent=Physo139533;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 140650 140723 . - 0 ID=Physo139533;Parent=Physo139533;rank=1 scaffold_75 . exon 140650 140723 . - . ID=Physo139533.1;Parent=Physo139533;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 ensembl protein_coding_gene 140862 142420 . + . ID=Physo139534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750031;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 140862 142420 . + . ID=Physo139534;Parent=Physo139534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 140862 141145 . + 0 ID=Physo139534;Parent=Physo139534;rank=1 scaffold_75 . exon 140862 141145 . + . ID=Physo139534.1;Parent=Physo139534;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . CDS 141212 142331 . + 0 ID=Physo139534;Parent=Physo139534;rank=2 scaffold_75 . exon 141212 142420 . + . ID=Physo139534.2;Parent=Physo139534;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_75 ensembl protein_coding_gene 142460 144460 . - . ID=Physo139535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750032;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 142460 144460 . - . ID=Physo139535;Parent=Physo139535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 142460 144460 . - 0 ID=Physo139535;Parent=Physo139535;rank=1 scaffold_75 . exon 142460 144460 . - . ID=Physo139535.1;Parent=Physo139535;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 144680 147598 . - . ID=Physo139536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750033;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 144680 147598 . - . ID=Physo139536;Parent=Physo139536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 144680 147598 . - . ID=Physo139536.1;Parent=Physo139536;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_75 . CDS 144788 147598 . - 0 ID=Physo139536;Parent=Physo139536;rank=1 scaffold_75 . repeat_region 153344 153372 . ? . description=dust scaffold_75 . repeat_region 153345 153369 . ? . description=trf scaffold_75 . repeat_region 155491 155500 . ? . description=dust scaffold_75 ensembl protein_coding_gene 153378 154607 . + . ID=Physo109222;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_750004;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 153378 154607 . + . ID=Physo109222;Parent=Physo109222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 153378 154607 . + 0 ID=Physo109222;Parent=Physo109222;rank=1 scaffold_75 . exon 153378 154607 . + . ID=Physo109222.1;Parent=Physo109222;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 148065 149252 . + . ID=Physo139537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750034;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 148065 149252 . + . ID=Physo139537;Parent=Physo139537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 148065 149252 . + . ID=Physo139537.1;Parent=Physo139537;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_75 . CDS 148111 149145 . + 0 ID=Physo139537;Parent=Physo139537;rank=1 scaffold_75 ensembl protein_coding_gene 151612 152638 . + . ID=Physo139538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750035;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 151612 152638 . + . ID=Physo139538;Parent=Physo139538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 151612 152033 . + 0 ID=Physo139538;Parent=Physo139538;rank=1 scaffold_75 . exon 151612 152033 . + . ID=Physo139538.1;Parent=Physo139538;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . CDS 152092 152638 . + 0 ID=Physo139538;Parent=Physo139538;rank=2 scaffold_75 . exon 152092 152638 . + . ID=Physo139538.2;Parent=Physo139538;constitutive=1;ensembl_phase=2;rank=2 scaffold_75 . biological_region 159599 159601 0.999 + . logic_name=eponine scaffold_75 . biological_region 160015 160021 0.999 - . logic_name=eponine scaffold_75 . biological_region 162357 162359 0.999 - . logic_name=eponine scaffold_75 ensembl protein_coding_gene 159583 160139 . - . ID=Physo139540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750037;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 159583 160139 . - . ID=Physo139540;Parent=Physo139540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 159583 159601 . - 0 ID=Physo139540;Parent=Physo139540;rank=3 scaffold_75 . exon 159583 159601 . - . ID=Physo139540.3;Parent=Physo139540;constitutive=1;ensembl_phase=2;rank=3 scaffold_75 . CDS 159678 159846 . - 0 ID=Physo139540;Parent=Physo139540;rank=2 scaffold_75 . exon 159678 159846 . - . ID=Physo139540.2;Parent=Physo139540;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_75 . CDS 159866 160139 . - 0 ID=Physo139540;Parent=Physo139540;rank=1 scaffold_75 . exon 159866 160139 . - . ID=Physo139540.1;Parent=Physo139540;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . repeat_region 168343 168355 . ? . description=dust scaffold_75 . repeat_region 170544 170557 . ? . description=dust scaffold_75 . repeat_region 172930 172939 . ? . description=dust scaffold_75 . repeat_region 173957 173964 . ? . description=dust scaffold_75 . repeat_region 174493 174544 . ? . description=trf scaffold_75 . repeat_region 174534 174584 . ? . description=trf scaffold_75 . repeat_region 175005 175018 . ? . description=dust scaffold_75 . repeat_region 176739 176748 . ? . description=dust scaffold_75 ensembl protein_coding_gene 173181 174592 . - . ID=Physo139541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750038;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 173181 174592 . - . ID=Physo139541;Parent=Physo139541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 173181 173945 . - 0 ID=Physo139541;Parent=Physo139541;rank=3 scaffold_75 . exon 173181 173945 . - . ID=Physo139541.3;Parent=Physo139541;constitutive=1;rank=3 scaffold_75 . CDS 174179 174274 . - 0 ID=Physo139541;Parent=Physo139541;rank=2 scaffold_75 . exon 174179 174274 . - . ID=Physo139541.2;Parent=Physo139541;constitutive=1;rank=2 scaffold_75 . CDS 174347 174592 . - 0 ID=Physo139541;Parent=Physo139541;rank=1 scaffold_75 . exon 174347 174592 . - . ID=Physo139541.1;Parent=Physo139541;constitutive=1;rank=1 scaffold_75 . biological_region 179232 179235 0.999 - . logic_name=eponine scaffold_75 . biological_region 179726 179729 0.999 - . logic_name=eponine scaffold_75 . biological_region 180218 180221 0.999 - . logic_name=eponine scaffold_75 . biological_region 180710 180713 0.999 - . logic_name=eponine scaffold_75 . biological_region 181202 181205 0.999 - . logic_name=eponine scaffold_75 . biological_region 181694 181697 0.999 - . logic_name=eponine scaffold_75 . biological_region 182188 182191 0.999 - . logic_name=eponine scaffold_75 . biological_region 184267 184268 0.999 + . logic_name=eponine scaffold_75 . biological_region 184294 184299 0.999 - . logic_name=eponine scaffold_75 ensembl tRNA_gene 180542 180627 . + . ID=EPrPSOG00000000047;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_75 ensembl transcript 180542 180627 . + . ID=EPrPSOT00000000047;Parent=EPrPSOG00000000047;biotype=tRNA;logic_name=ncrna_eg scaffold_75 ensembl tRNA_gene 179556 179641 . + . ID=EPrPSOG00000000102;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_75 ensembl transcript 179556 179641 . + . ID=EPrPSOT00000000102;Parent=EPrPSOG00000000102;biotype=tRNA;logic_name=ncrna_eg scaffold_75 ensembl tRNA_gene 181034 181119 . + . ID=EPrPSOG00000000158;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_75 ensembl transcript 181034 181119 . + . ID=EPrPSOT00000000158;Parent=EPrPSOG00000000158;biotype=tRNA;logic_name=ncrna_eg scaffold_75 ensembl tRNA_gene 181526 181611 . + . ID=EPrPSOG00000000174;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_75 ensembl transcript 181526 181611 . + . ID=EPrPSOT00000000174;Parent=EPrPSOG00000000174;biotype=tRNA;logic_name=ncrna_eg scaffold_75 ensembl tRNA_gene 180050 180135 . + . ID=EPrPSOG00000000182;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_75 ensembl transcript 180050 180135 . + . ID=EPrPSOT00000000182;Parent=EPrPSOG00000000182;biotype=tRNA;logic_name=ncrna_eg scaffold_75 ensembl tRNA_gene 182018 182103 . + . ID=EPrPSOG00000000271;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_75 ensembl transcript 182018 182103 . + . ID=EPrPSOT00000000271;Parent=EPrPSOG00000000271;biotype=tRNA;logic_name=ncrna_eg scaffold_75 . exon 180542 180627 . + . ID=EPrPSOE00000000047;Parent=EPrPSOT00000000047;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . exon 179556 179641 . + . ID=EPrPSOE00000000102;Parent=EPrPSOT00000000102;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . exon 181034 181119 . + . ID=EPrPSOE00000000158;Parent=EPrPSOT00000000158;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . exon 181526 181611 . + . ID=EPrPSOE00000000174;Parent=EPrPSOT00000000174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . exon 180050 180135 . + . ID=EPrPSOE00000000182;Parent=EPrPSOT00000000182;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . exon 182018 182103 . + . ID=EPrPSOE00000000271;Parent=EPrPSOT00000000271;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . repeat_region 188886 188938 . ? . description=trf scaffold_75 . repeat_region 188908 188949 . ? . description=trf scaffold_75 . repeat_region 188916 188952 . ? . description=trf scaffold_75 . repeat_region 190394 190401 . ? . description=dust scaffold_75 . repeat_region 194125 194132 . ? . description=dust scaffold_75 ensembl protein_coding_gene 191312 193934 . + . ID=Physo139542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750039;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 191312 193934 . + . ID=Physo139542;Parent=Physo139542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 191312 191446 . + 0 ID=Physo139542;Parent=Physo139542;rank=1 scaffold_75 . exon 191312 191446 . + . ID=Physo139542.1;Parent=Physo139542;constitutive=1;rank=1 scaffold_75 . CDS 191482 192354 . + 0 ID=Physo139542;Parent=Physo139542;rank=2 scaffold_75 . exon 191482 192354 . + . ID=Physo139542.2;Parent=Physo139542;constitutive=1;rank=2 scaffold_75 . CDS 192622 192750 . + 0 ID=Physo139542;Parent=Physo139542;rank=3 scaffold_75 . exon 192622 192750 . + . ID=Physo139542.3;Parent=Physo139542;constitutive=1;rank=3 scaffold_75 . CDS 192921 193058 . + 0 ID=Physo139542;Parent=Physo139542;rank=4 scaffold_75 . exon 192921 193058 . + . ID=Physo139542.4;Parent=Physo139542;constitutive=1;rank=4 scaffold_75 . CDS 193521 193934 . + 0 ID=Physo139542;Parent=Physo139542;rank=5 scaffold_75 . exon 193521 193934 . + . ID=Physo139542.5;Parent=Physo139542;constitutive=1;rank=5 scaffold_75 . biological_region 200379 200383 0.999 + . logic_name=eponine scaffold_75 . biological_region 200463 200467 0.999 - . logic_name=eponine scaffold_75 . biological_region 200551 200552 0.999 + . logic_name=eponine scaffold_75 . biological_region 201887 201889 0.999 - . logic_name=eponine scaffold_75 . biological_region 203729 203733 0.999 + . logic_name=eponine scaffold_75 . biological_region 204349 204351 0.999 + . logic_name=eponine scaffold_75 . biological_region 206439 206443 0.999 - . logic_name=eponine scaffold_75 ensembl protein_coding_gene 200241 201428 . + . ID=Physo139543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750040;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 200241 201428 . + . ID=Physo139543;Parent=Physo139543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 200241 201428 . + 0 ID=Physo139543;Parent=Physo139543;rank=1 scaffold_75 . exon 200241 201428 . + . ID=Physo139543.1;Parent=Physo139543;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 201638 203866 . - . ID=Physo139544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750041;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 201638 203866 . - . ID=Physo139544;Parent=Physo139544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 201638 203866 . - 0 ID=Physo139544;Parent=Physo139544;rank=1 scaffold_75 . exon 201638 203866 . - . ID=Physo139544.1;Parent=Physo139544;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 204275 204971 . + . ID=Physo139545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750042;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 204275 204971 . + . ID=Physo139545;Parent=Physo139545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 204275 204670 . + 0 ID=Physo139545;Parent=Physo139545;rank=1 scaffold_75 . exon 204275 204670 . + . ID=Physo139545.1;Parent=Physo139545;constitutive=1;rank=1 scaffold_75 . CDS 204753 204971 . + 0 ID=Physo139545;Parent=Physo139545;rank=2 scaffold_75 . exon 204753 204971 . + . ID=Physo139545.2;Parent=Physo139545;constitutive=1;rank=2 scaffold_75 ensembl protein_coding_gene 205283 206527 . - . ID=Physo139546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750043;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 205283 206527 . - . ID=Physo139546;Parent=Physo139546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 205283 206527 . - 0 ID=Physo139546;Parent=Physo139546;rank=1 scaffold_75 . exon 205283 206527 . - . ID=Physo139546.1;Parent=Physo139546;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 206743 207960 . - . ID=Physo139547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750044;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 206743 207960 . - . ID=Physo139547;Parent=Physo139547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 206743 207960 . - 0 ID=Physo139547;Parent=Physo139547;rank=1 scaffold_75 . exon 206743 207960 . - . ID=Physo139547.1;Parent=Physo139547;constitutive=1;rank=1 scaffold_75 . repeat_region 210314 210321 . ? . description=dust scaffold_75 . repeat_region 214266 214323 . ? . description=dust scaffold_75 ensembl protein_coding_gene 211406 211729 . + . ID=Physo120321;biotype=protein_coding;external_name=estExt_Genewise1.C_750018;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 211406 211729 . + . ID=Physo120321;Parent=Physo120321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 211406 211729 . + 0 ID=Physo120321;Parent=Physo120321;rank=1 scaffold_75 . exon 211406 211729 . + . ID=Physo120321.1;Parent=Physo120321;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 208074 209706 . + . ID=Physo158003;biotype=protein_coding;external_name=C_scaffold_75000012;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 208074 209706 . + . ID=Physo158003;Parent=Physo158003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 208074 209596 . + 0 ID=Physo158003;Parent=Physo158003;rank=1 scaffold_75 . exon 208074 209596 . + . ID=Physo158003.1;Parent=Physo158003;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . CDS 209700 209706 . + 0 ID=Physo158003;Parent=Physo158003;rank=2 scaffold_75 . exon 209700 209706 . + . ID=Physo158003.2;Parent=Physo158003;constitutive=1;ensembl_phase=2;rank=2 scaffold_75 ensembl protein_coding_gene 209758 211007 . - . ID=Physo158004;biotype=protein_coding;external_name=C_scaffold_75000013;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 209758 211007 . - . ID=Physo158004;Parent=Physo158004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 209758 209936 . - 0 ID=Physo158004;Parent=Physo158004;rank=9 scaffold_75 . exon 209758 209936 . - . ID=Physo158004.9;Parent=Physo158004;constitutive=1;ensembl_phase=1;rank=9 scaffold_75 . CDS 210005 210032 . - 0 ID=Physo158004;Parent=Physo158004;rank=8 scaffold_75 . exon 210005 210032 . - . ID=Physo158004.8;Parent=Physo158004;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_75 . CDS 210107 210178 . - 0 ID=Physo158004;Parent=Physo158004;rank=7 scaffold_75 . exon 210107 210178 . - . ID=Physo158004.7;Parent=Physo158004;constitutive=1;rank=7 scaffold_75 . CDS 210238 210264 . - 0 ID=Physo158004;Parent=Physo158004;rank=6 scaffold_75 . exon 210238 210264 . - . ID=Physo158004.6;Parent=Physo158004;constitutive=1;rank=6 scaffold_75 . CDS 210337 210450 . - 0 ID=Physo158004;Parent=Physo158004;rank=5 scaffold_75 . exon 210337 210450 . - . ID=Physo158004.5;Parent=Physo158004;constitutive=1;rank=5 scaffold_75 . CDS 210518 210577 . - 0 ID=Physo158004;Parent=Physo158004;rank=4 scaffold_75 . exon 210518 210577 . - . ID=Physo158004.4;Parent=Physo158004;constitutive=1;rank=4 scaffold_75 . CDS 210643 210681 . - 0 ID=Physo158004;Parent=Physo158004;rank=3 scaffold_75 . exon 210643 210681 . - . ID=Physo158004.3;Parent=Physo158004;constitutive=1;rank=3 scaffold_75 . CDS 210742 210812 . - 0 ID=Physo158004;Parent=Physo158004;rank=2 scaffold_75 . exon 210742 210812 . - . ID=Physo158004.2;Parent=Physo158004;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 210881 211007 . - 0 ID=Physo158004;Parent=Physo158004;rank=1 scaffold_75 . exon 210881 211007 . - . ID=Physo158004.1;Parent=Physo158004;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 212428 214459 . - . ID=Physo158005;biotype=protein_coding;external_name=C_scaffold_75000014;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 212428 214459 . - . ID=Physo158005;Parent=Physo158005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 212428 212628 . - 0 ID=Physo158005;Parent=Physo158005;rank=8 scaffold_75 . exon 212428 212628 . - . ID=Physo158005.8;Parent=Physo158005;constitutive=1;rank=8 scaffold_75 . CDS 212673 212786 . - 0 ID=Physo158005;Parent=Physo158005;rank=7 scaffold_75 . exon 212673 212786 . - . ID=Physo158005.7;Parent=Physo158005;constitutive=1;rank=7 scaffold_75 . CDS 212820 212927 . - 0 ID=Physo158005;Parent=Physo158005;rank=6 scaffold_75 . exon 212820 212927 . - . ID=Physo158005.6;Parent=Physo158005;constitutive=1;rank=6 scaffold_75 . CDS 212996 213089 . - 0 ID=Physo158005;Parent=Physo158005;rank=5 scaffold_75 . exon 212996 213089 . - . ID=Physo158005.5;Parent=Physo158005;constitutive=1;ensembl_phase=2;rank=5 scaffold_75 . CDS 213159 213246 . - 0 ID=Physo158005;Parent=Physo158005;rank=4 scaffold_75 . exon 213159 213246 . - . ID=Physo158005.4;Parent=Physo158005;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_75 . CDS 213316 213457 . - 0 ID=Physo158005;Parent=Physo158005;rank=3 scaffold_75 . exon 213316 213457 . - . ID=Physo158005.3;Parent=Physo158005;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_75 . CDS 213529 213692 . - 0 ID=Physo158005;Parent=Physo158005;rank=2 scaffold_75 . exon 213529 213692 . - . ID=Physo158005.2;Parent=Physo158005;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 213769 214459 . - 0 ID=Physo158005;Parent=Physo158005;rank=1 scaffold_75 . exon 213769 214459 . - . ID=Physo158005.1;Parent=Physo158005;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . biological_region 221340 221340 0.999 - . logic_name=eponine scaffold_75 ensembl protein_coding_gene 218152 218889 . - . ID=Physo139551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750048;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 218152 218889 . - . ID=Physo139551;Parent=Physo139551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 218152 218889 . - 0 ID=Physo139551;Parent=Physo139551;rank=1 scaffold_75 . exon 218152 218889 . - . ID=Physo139551.1;Parent=Physo139551;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 221005 221869 . + . ID=Physo139552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750049;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 221005 221869 . + . ID=Physo139552;Parent=Physo139552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 221005 221363 . + 0 ID=Physo139552;Parent=Physo139552;rank=1 scaffold_75 . exon 221005 221363 . + . ID=Physo139552.1;Parent=Physo139552;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . CDS 221539 221578 . + 0 ID=Physo139552;Parent=Physo139552;rank=2 scaffold_75 . exon 221539 221578 . + . ID=Physo139552.2;Parent=Physo139552;constitutive=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 221641 221769 . + 0 ID=Physo139552;Parent=Physo139552;rank=3 scaffold_75 . exon 221641 221769 . + . ID=Physo139552.3;Parent=Physo139552;constitutive=1;rank=3 scaffold_75 . CDS 221855 221869 . + 0 ID=Physo139552;Parent=Physo139552;rank=4 scaffold_75 . exon 221855 221869 . + . ID=Physo139552.4;Parent=Physo139552;constitutive=1;rank=4 scaffold_75 ensembl protein_coding_gene 222194 223322 . - . ID=Physo139553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750050;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 222194 223322 . - . ID=Physo139553;Parent=Physo139553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 222194 223322 . - . ID=Physo139553.1;Parent=Physo139553;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_75 . CDS 222255 223322 . - 0 ID=Physo139553;Parent=Physo139553;rank=1 scaffold_75 ensembl protein_coding_gene 226542 227006 . + . ID=Physo139554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750051;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 226542 227006 . + . ID=Physo139554;Parent=Physo139554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 226542 227006 . + 0 ID=Physo139554;Parent=Physo139554;rank=1 scaffold_75 . exon 226542 227006 . + . ID=Physo139554.1;Parent=Physo139554;constitutive=1;rank=1 scaffold_75 . repeat_region 227167 227178 . ? . description=dust scaffold_75 ensembl protein_coding_gene 231782 234647 . + . ID=Physo120327;biotype=protein_coding;external_name=estExt_Genewise1.C_750024;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 231782 234647 . + . ID=Physo120327;Parent=Physo120327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 231782 232402 . + . ID=Physo120327.1;Parent=Physo120327;constitutive=1;ensembl_phase=-1;rank=1 scaffold_75 . CDS 232094 232402 . + 0 ID=Physo120327;Parent=Physo120327;rank=1 scaffold_75 . CDS 232471 232632 . + 0 ID=Physo120327;Parent=Physo120327;rank=2 scaffold_75 . exon 232471 232632 . + . ID=Physo120327.2;Parent=Physo120327;constitutive=1;rank=2 scaffold_75 . CDS 232708 233122 . + 0 ID=Physo120327;Parent=Physo120327;rank=3 scaffold_75 . exon 232708 233122 . + . ID=Physo120327.3;Parent=Physo120327;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_75 . CDS 233462 234645 . + 0 ID=Physo120327;Parent=Physo120327;rank=4 scaffold_75 . exon 233462 234647 . + . ID=Physo120327.4;Parent=Physo120327;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_75 ensembl protein_coding_gene 227439 230066 . - . ID=Physo139555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750052;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 227439 230066 . - . ID=Physo139555;Parent=Physo139555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 227439 230066 . - 0 ID=Physo139555;Parent=Physo139555;rank=1 scaffold_75 . exon 227439 230066 . - . ID=Physo139555.1;Parent=Physo139555;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 230290 230804 . + . ID=Physo139556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750053;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 230290 230804 . + . ID=Physo139556;Parent=Physo139556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 230290 230585 . + . ID=Physo139556.1;Parent=Physo139556;constitutive=1;ensembl_phase=-1;rank=1 scaffold_75 . CDS 230310 230585 . + 0 ID=Physo139556;Parent=Physo139556;rank=1 scaffold_75 . CDS 230650 230802 . + 0 ID=Physo139556;Parent=Physo139556;rank=2 scaffold_75 . exon 230650 230804 . + . ID=Physo139556.2;Parent=Physo139556;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_75 . repeat_region 240655 240686 . ? . description=trf scaffold_75 . repeat_region 240690 240719 . ? . description=trf scaffold_75 . repeat_region 246125 246851 . + . description=Sola3-2_PS scaffold_75 ensembl protein_coding_gene 240074 243993 . - . ID=Physo139557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750054;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 240074 243993 . - . ID=Physo139557;Parent=Physo139557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 240074 243993 . - . ID=Physo139557.1;Parent=Physo139557;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_75 . CDS 240094 243993 . - 0 ID=Physo139557;Parent=Physo139557;rank=1 scaffold_75 ensembl protein_coding_gene 246106 247473 . + . ID=Physo139558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750055;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 246106 247473 . + . ID=Physo139558;Parent=Physo139558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 246106 247473 . + 0 ID=Physo139558;Parent=Physo139558;rank=1 scaffold_75 . exon 246106 247473 . + . ID=Physo139558.1;Parent=Physo139558;constitutive=1;rank=1 scaffold_75 . biological_region 246929 246935 0.999 - . logic_name=eponine scaffold_75 . repeat_region 249702 249711 . ? . description=dust scaffold_75 . biological_region 251549 251549 0.999 + . logic_name=eponine scaffold_75 . repeat_region 252545 252559 . ? . description=dust scaffold_75 . repeat_region 252819 252845 . ? . description=dust scaffold_75 . biological_region 253807 253813 0.999 + . logic_name=eponine scaffold_75 . repeat_region 255642 255649 . ? . description=dust scaffold_75 ensembl protein_coding_gene 251100 252083 . + . ID=Physo139559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750056;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 251100 252083 . + . ID=Physo139559;Parent=Physo139559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 251100 251394 . + 0 ID=Physo139559;Parent=Physo139559;rank=1 scaffold_75 . exon 251100 251394 . + . ID=Physo139559.1;Parent=Physo139559;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . CDS 251486 251750 . + 0 ID=Physo139559;Parent=Physo139559;rank=2 scaffold_75 . exon 251486 251750 . + . ID=Physo139559.2;Parent=Physo139559;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_75 . CDS 251834 252083 . + 0 ID=Physo139559;Parent=Physo139559;rank=3 scaffold_75 . exon 251834 252083 . + . ID=Physo139559.3;Parent=Physo139559;constitutive=1;ensembl_phase=2;rank=3 scaffold_75 ensembl protein_coding_gene 253268 254635 . - . ID=Physo139560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750057;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 253268 254635 . - . ID=Physo139560;Parent=Physo139560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 253268 254635 . - 0 ID=Physo139560;Parent=Physo139560;rank=1 scaffold_75 . exon 253268 254635 . - . ID=Physo139560.1;Parent=Physo139560;constitutive=1;rank=1 scaffold_75 . repeat_region 257610 257934 . - . description=Sola3-2_PS scaffold_75 . repeat_region 259916 259961 . ? . description=trf scaffold_75 . repeat_region 259920 259973 . ? . description=trf scaffold_75 . repeat_region 260851 261563 . - . description=Sola3-2_PS scaffold_75 ensembl protein_coding_gene 264949 265963 . - . ID=Physo120335;biotype=protein_coding;external_name=estExt_Genewise1.C_750032;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 264949 265963 . - . ID=Physo120335;Parent=Physo120335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 264949 265102 . - 0 ID=Physo120335;Parent=Physo120335;rank=4 scaffold_75 . exon 264949 265102 . - . ID=Physo120335.4;Parent=Physo120335;constitutive=1;ensembl_phase=2;rank=4 scaffold_75 . CDS 265181 265462 . - 0 ID=Physo120335;Parent=Physo120335;rank=3 scaffold_75 . exon 265181 265462 . - . ID=Physo120335.3;Parent=Physo120335;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_75 . CDS 265532 265649 . - 0 ID=Physo120335;Parent=Physo120335;rank=2 scaffold_75 . exon 265532 265649 . - . ID=Physo120335.2;Parent=Physo120335;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_75 . CDS 265738 265963 . - 0 ID=Physo120335;Parent=Physo120335;rank=1 scaffold_75 . exon 265738 265963 . - . ID=Physo120335.1;Parent=Physo120335;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 256985 258285 . - . ID=Physo139561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750058;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 256985 258285 . - . ID=Physo139561;Parent=Physo139561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 256985 258235 . - 0 ID=Physo139561;Parent=Physo139561;rank=2 scaffold_75 . exon 256985 258235 . - . ID=Physo139561.2;Parent=Physo139561;constitutive=1;rank=2 scaffold_75 . CDS 258277 258285 . - 0 ID=Physo139561;Parent=Physo139561;rank=1 scaffold_75 . exon 258277 258285 . - . ID=Physo139561.1;Parent=Physo139561;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 260235 261581 . - . ID=Physo139562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750059;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 260235 261581 . - . ID=Physo139562;Parent=Physo139562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 260235 261581 . - 0 ID=Physo139562;Parent=Physo139562;rank=1 scaffold_75 . exon 260235 261581 . - . ID=Physo139562.1;Parent=Physo139562;constitutive=1;rank=1 scaffold_75 . biological_region 266358 266360 0.999 + . logic_name=eponine scaffold_75 . repeat_region 267076 267083 . ? . description=dust scaffold_75 . repeat_region 267213 267220 . ? . description=dust scaffold_75 . biological_region 267298 267301 0.999 - . logic_name=eponine scaffold_75 . biological_region 267353 267356 0.999 + . logic_name=eponine scaffold_75 . biological_region 270895 270898 0.999 + . logic_name=eponine scaffold_75 . biological_region 271787 271794 0.999 - . logic_name=eponine scaffold_75 . biological_region 271842 271850 0.999 + . logic_name=eponine scaffold_75 . biological_region 271985 271991 0.999 - . logic_name=eponine scaffold_75 . biological_region 272367 272372 0.999 - . logic_name=eponine scaffold_75 . biological_region 272390 272396 0.999 - . logic_name=eponine scaffold_75 . biological_region 272779 272782 0.999 - . logic_name=eponine scaffold_75 . biological_region 273744 273751 0.999 - . logic_name=eponine scaffold_75 . biological_region 273791 273793 0.999 - . logic_name=eponine scaffold_75 . repeat_region 275322 275371 . ? . description=dust scaffold_75 ensembl protein_coding_gene 266068 267910 . + . ID=Physo139564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750061;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 266068 267910 . + . ID=Physo139564;Parent=Physo139564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 266068 266163 . + 0 ID=Physo139564;Parent=Physo139564;rank=1 scaffold_75 . exon 266068 266163 . + . ID=Physo139564.1;Parent=Physo139564;constitutive=1;rank=1 scaffold_75 . CDS 266225 266303 . + 0 ID=Physo139564;Parent=Physo139564;rank=2 scaffold_75 . exon 266225 266303 . + . ID=Physo139564.2;Parent=Physo139564;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_75 . CDS 266381 266508 . + 0 ID=Physo139564;Parent=Physo139564;rank=3 scaffold_75 . exon 266381 266508 . + . ID=Physo139564.3;Parent=Physo139564;constitutive=1;ensembl_phase=1;rank=3 scaffold_75 . CDS 266534 266539 . + 0 ID=Physo139564;Parent=Physo139564;rank=4 scaffold_75 . exon 266534 266539 . + . ID=Physo139564.4;Parent=Physo139564;constitutive=1;rank=4 scaffold_75 . CDS 266599 266648 . + 0 ID=Physo139564;Parent=Physo139564;rank=5 scaffold_75 . exon 266599 266648 . + . ID=Physo139564.5;Parent=Physo139564;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_75 . CDS 266721 266865 . + 0 ID=Physo139564;Parent=Physo139564;rank=6 scaffold_75 . exon 266721 266865 . + . ID=Physo139564.6;Parent=Physo139564;constitutive=1;ensembl_phase=2;rank=6 scaffold_75 . CDS 266933 267011 . + 0 ID=Physo139564;Parent=Physo139564;rank=7 scaffold_75 . exon 266933 267011 . + . ID=Physo139564.7;Parent=Physo139564;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_75 . CDS 267118 267133 . + 0 ID=Physo139564;Parent=Physo139564;rank=8 scaffold_75 . exon 267118 267133 . + . ID=Physo139564.8;Parent=Physo139564;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_75 . CDS 267237 267462 . + 0 ID=Physo139564;Parent=Physo139564;rank=9 scaffold_75 . exon 267237 267462 . + . ID=Physo139564.9;Parent=Physo139564;constitutive=1;ensembl_phase=2;rank=9 scaffold_75 . CDS 267536 267629 . + 0 ID=Physo139564;Parent=Physo139564;rank=10 scaffold_75 . exon 267536 267629 . + . ID=Physo139564.10;Parent=Physo139564;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_75 . CDS 267702 267789 . + 0 ID=Physo139564;Parent=Physo139564;rank=11 scaffold_75 . exon 267702 267789 . + . ID=Physo139564.11;Parent=Physo139564;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_75 . CDS 267871 267910 . + 0 ID=Physo139564;Parent=Physo139564;rank=12 scaffold_75 . exon 267871 267910 . + . ID=Physo139564.12;Parent=Physo139564;constitutive=1;ensembl_phase=2;rank=12 scaffold_75 ensembl protein_coding_gene 268794 270275 . - . ID=Physo139565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750062;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 268794 270275 . - . ID=Physo139565;Parent=Physo139565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 268794 270275 . - 0 ID=Physo139565;Parent=Physo139565;rank=1 scaffold_75 . exon 268794 270275 . - . ID=Physo139565.1;Parent=Physo139565;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 270700 271275 . + . ID=Physo139566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750063;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 270700 271275 . + . ID=Physo139566;Parent=Physo139566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 270700 271275 . + 0 ID=Physo139566;Parent=Physo139566;rank=1 scaffold_75 . exon 270700 271275 . + . ID=Physo139566.1;Parent=Physo139566;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 271526 274007 . + . ID=Physo139567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750064;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 271526 274007 . + . ID=Physo139567;Parent=Physo139567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 271526 271528 . + 0 ID=Physo139567;Parent=Physo139567;rank=1 scaffold_75 . exon 271526 271528 . + . ID=Physo139567.1;Parent=Physo139567;constitutive=1;rank=1 scaffold_75 . CDS 271678 271808 . + 0 ID=Physo139567;Parent=Physo139567;rank=2 scaffold_75 . exon 271678 271808 . + . ID=Physo139567.2;Parent=Physo139567;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_75 . CDS 271897 272482 . + 0 ID=Physo139567;Parent=Physo139567;rank=3 scaffold_75 . exon 271897 272482 . + . ID=Physo139567.3;Parent=Physo139567;constitutive=1;ensembl_phase=2;rank=3 scaffold_75 . CDS 272556 274007 . + 0 ID=Physo139567;Parent=Physo139567;rank=4 scaffold_75 . exon 272556 274007 . + . ID=Physo139567.4;Parent=Physo139567;constitutive=1;rank=4 scaffold_75 ensembl protein_coding_gene 274353 278466 . - . ID=Physo158008;biotype=protein_coding;external_name=C_scaffold_75000017;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 274353 278466 . - . ID=Physo158008;Parent=Physo158008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 274353 274591 . - 0 ID=Physo158008;Parent=Physo158008;rank=11 scaffold_75 . exon 274353 274591 . - . ID=Physo158008.11;Parent=Physo158008;constitutive=1;ensembl_phase=1;rank=11 scaffold_75 . CDS 274703 275270 . - 0 ID=Physo158008;Parent=Physo158008;rank=10 scaffold_75 . exon 274703 275270 . - . ID=Physo158008.10;Parent=Physo158008;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_75 . CDS 275385 275615 . - 0 ID=Physo158008;Parent=Physo158008;rank=9 scaffold_75 . exon 275385 275615 . - . ID=Physo158008.9;Parent=Physo158008;constitutive=1;rank=9 scaffold_75 . CDS 277245 277328 . - 0 ID=Physo158008;Parent=Physo158008;rank=8 scaffold_75 . CDS 277417 277524 . - 0 ID=Physo158008;Parent=Physo158008;rank=7 scaffold_75 . CDS 277597 277746 . - 0 ID=Physo158008;Parent=Physo158008;rank=6 scaffold_75 . CDS 277833 277857 . - 0 ID=Physo158008;Parent=Physo158008;rank=5 scaffold_75 . CDS 277927 278018 . - 0 ID=Physo158008;Parent=Physo158008;rank=4 scaffold_75 . CDS 278078 278172 . - 0 ID=Physo158008;Parent=Physo158008;rank=3 scaffold_75 . CDS 278254 278324 . - 0 ID=Physo158008;Parent=Physo158008;rank=2 scaffold_75 . CDS 278396 278466 . - 0 ID=Physo158008;Parent=Physo158008;rank=1 scaffold_75 . repeat_region 276489 276533 . ? . description=trf scaffold_75 . repeat_region 277038 277059 . ? . description=trf scaffold_75 ensembl protein_coding_gene 279565 281948 . - . ID=Physo139571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750068;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 279565 281948 . - . ID=Physo139571;Parent=Physo139571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 279565 279998 . - . ID=Physo139571.3;Parent=Physo139571;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_75 . CDS 279634 279998 . - 0 ID=Physo139571;Parent=Physo139571;rank=3 scaffold_75 . CDS 280083 280102 . - 0 ID=Physo139571;Parent=Physo139571;rank=2 scaffold_75 . exon 280083 280102 . - . ID=Physo139571.2;Parent=Physo139571;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 280288 281948 . - 0 ID=Physo139571;Parent=Physo139571;rank=1 scaffold_75 . exon 280288 281948 . - . ID=Physo139571.1;Parent=Physo139571;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . exon 277245 277328 . - . ID=Physo158008.8;Parent=Physo158008;constitutive=1;rank=8 scaffold_75 . exon 277417 277524 . - . ID=Physo158008.7;Parent=Physo158008;constitutive=1;rank=7 scaffold_75 . exon 277597 277746 . - . ID=Physo158008.6;Parent=Physo158008;constitutive=1;rank=6 scaffold_75 . exon 277833 277857 . - . ID=Physo158008.5;Parent=Physo158008;constitutive=1;ensembl_phase=2;rank=5 scaffold_75 . exon 277927 278018 . - . ID=Physo158008.4;Parent=Physo158008;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_75 . exon 278078 278172 . - . ID=Physo158008.3;Parent=Physo158008;constitutive=1;ensembl_phase=1;rank=3 scaffold_75 . exon 278254 278324 . - . ID=Physo158008.2;Parent=Physo158008;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_75 . exon 278396 278466 . - . ID=Physo158008.1;Parent=Physo158008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 . repeat_region 287546 287560 . ? . description=dust scaffold_75 . biological_region 289275 289277 0.999 + . logic_name=eponine scaffold_75 . biological_region 289337 289337 0.999 - . logic_name=eponine scaffold_75 . biological_region 289960 289966 0.999 - . logic_name=eponine scaffold_75 . biological_region 290020 290022 0.999 + . logic_name=eponine scaffold_75 . biological_region 291676 291678 0.999 - . logic_name=eponine scaffold_75 . biological_region 291732 291738 0.999 + . logic_name=eponine scaffold_75 . biological_region 291969 291970 0.999 - . logic_name=eponine scaffold_75 . repeat_region 293555 293562 . ? . description=dust scaffold_75 . repeat_region 294035 294042 . ? . description=dust scaffold_75 ensembl protein_coding_gene 289244 289861 . - . ID=Physo139572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750069;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 289244 289861 . - . ID=Physo139572;Parent=Physo139572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 289244 289416 . - 0 ID=Physo139572;Parent=Physo139572;rank=2 scaffold_75 . exon 289244 289416 . - . ID=Physo139572.2;Parent=Physo139572;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 289438 289861 . - 0 ID=Physo139572;Parent=Physo139572;rank=1 scaffold_75 . exon 289438 289861 . - . ID=Physo139572.1;Parent=Physo139572;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 ensembl protein_coding_gene 296817 297320 . + . ID=Physo139573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750070;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 296817 297320 . + . ID=Physo139573;Parent=Physo139573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 296817 297320 . + 0 ID=Physo139573;Parent=Physo139573;rank=1 scaffold_75 . exon 296817 297320 . + . ID=Physo139573.1;Parent=Physo139573;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 297673 299643 . - . ID=Physo139574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750071;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 297673 299643 . - . ID=Physo139574;Parent=Physo139574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 297673 299643 . - 0 ID=Physo139574;Parent=Physo139574;rank=1 scaffold_75 . exon 297673 299643 . - . ID=Physo139574.1;Parent=Physo139574;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 300781 301326 . + . ID=Physo139575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750072;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 300781 301326 . + . ID=Physo139575;Parent=Physo139575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 300781 301326 . + 0 ID=Physo139575;Parent=Physo139575;rank=1 scaffold_75 . exon 300781 301326 . + . ID=Physo139575.1;Parent=Physo139575;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 301366 306870 . - . ID=Physo139576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750073;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 301366 306870 . - . ID=Physo139576;Parent=Physo139576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 301366 306870 . - 0 ID=Physo139576;Parent=Physo139576;rank=1 scaffold_75 . exon 301366 306870 . - . ID=Physo139576.1;Parent=Physo139576;constitutive=1;rank=1 scaffold_75 . biological_region 306240 306242 0.999 - . logic_name=eponine scaffold_75 . biological_region 309857 309860 0.999 - . logic_name=eponine scaffold_75 . repeat_region 313094 313133 . ? . description=dust scaffold_75 . repeat_region 313099 313132 . ? . description=trf scaffold_75 ensembl protein_coding_gene 307504 308013 . + . ID=Physo139577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750074;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 307504 308013 . + . ID=Physo139577;Parent=Physo139577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 307504 308013 . + 0 ID=Physo139577;Parent=Physo139577;rank=1 scaffold_75 . exon 307504 308013 . + . ID=Physo139577.1;Parent=Physo139577;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 308141 309884 . - . ID=Physo139578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750075;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 308141 309884 . - . ID=Physo139578;Parent=Physo139578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 308141 308207 . - . ID=Physo139578.5;Parent=Physo139578;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_75 . CDS 308163 308207 . - 0 ID=Physo139578;Parent=Physo139578;rank=5 scaffold_75 . CDS 308300 309446 . - 0 ID=Physo139578;Parent=Physo139578;rank=4 scaffold_75 . exon 308300 309446 . - . ID=Physo139578.4;Parent=Physo139578;constitutive=1;ensembl_phase=2;rank=4 scaffold_75 . CDS 309539 309627 . - 0 ID=Physo139578;Parent=Physo139578;rank=3 scaffold_75 . exon 309539 309627 . - . ID=Physo139578.3;Parent=Physo139578;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_75 . CDS 309703 309766 . - 0 ID=Physo139578;Parent=Physo139578;rank=2 scaffold_75 . exon 309703 309766 . - . ID=Physo139578.2;Parent=Physo139578;constitutive=1;ensembl_phase=2;rank=2 scaffold_75 . CDS 309844 309884 . - 0 ID=Physo139578;Parent=Physo139578;rank=1 scaffold_75 . exon 309844 309884 . - . ID=Physo139578.1;Parent=Physo139578;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_75 ensembl protein_coding_gene 311611 312021 . + . ID=Physo139579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750076;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 311611 312021 . + . ID=Physo139579;Parent=Physo139579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 311611 312021 . + 0 ID=Physo139579;Parent=Physo139579;rank=1 scaffold_75 . exon 311611 312021 . + . ID=Physo139579.1;Parent=Physo139579;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 318096 319412 . - . ID=Physo109224;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_750006;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 318096 319412 . - . ID=Physo109224;Parent=Physo109224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 318096 319412 . - 0 ID=Physo109224;Parent=Physo109224;rank=1 scaffold_75 . exon 318096 319412 . - . ID=Physo109224.1;Parent=Physo109224;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 322434 325535 . + . ID=Physo139581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750078;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 322434 325535 . + . ID=Physo139581;Parent=Physo139581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 322434 325535 . + 0 ID=Physo139581;Parent=Physo139581;rank=1 scaffold_75 . exon 322434 325535 . + . ID=Physo139581.1;Parent=Physo139581;constitutive=1;rank=1 scaffold_75 . repeat_region 325621 325643 . ? . description=dust scaffold_75 . biological_region 325957 325961 0.999 + . logic_name=eponine scaffold_75 . biological_region 326159 326166 0.999 + . logic_name=eponine scaffold_75 . biological_region 326197 326202 0.999 - . logic_name=eponine scaffold_75 . repeat_region 327184 327192 . ? . description=dust scaffold_75 . repeat_region 328223 328232 . ? . description=dust scaffold_75 . biological_region 331719 331723 0.999 + . logic_name=eponine scaffold_75 . biological_region 331840 331841 0.999 - . logic_name=eponine scaffold_75 . repeat_region 332032 332068 . ? . description=trf scaffold_75 . biological_region 332067 332075 0.999 - . logic_name=eponine scaffold_75 . biological_region 333686 333688 0.999 + . logic_name=eponine scaffold_75 . repeat_region 333909 333957 . ? . description=trf scaffold_75 . repeat_region 333917 333957 . ? . description=trf scaffold_75 ensembl protein_coding_gene 325818 326971 . - . ID=Physo139582;biotype=protein_coding;description=Gpr11 [Source:UniProtKB/TrEMBL%3BAcc:B6V9Y8];external_name=estExt_fgenesh1_pg.C_750079;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 325818 326971 . - . ID=Physo139582;Parent=Physo139582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . exon 325818 326971 . - . ID=Physo139582.1;Parent=Physo139582;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_75 . CDS 325928 326971 . - 0 ID=Physo139582;Parent=Physo139582;rank=1 scaffold_75 ensembl protein_coding_gene 327721 332091 . - . ID=Physo139583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750080;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 327721 332091 . - . ID=Physo139583;Parent=Physo139583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 327721 327912 . - 0 ID=Physo139583;Parent=Physo139583;rank=6 scaffold_75 . exon 327721 327912 . - . ID=Physo139583.6;Parent=Physo139583;constitutive=1;rank=6 scaffold_75 . CDS 327979 328185 . - 0 ID=Physo139583;Parent=Physo139583;rank=5 scaffold_75 . exon 327979 328185 . - . ID=Physo139583.5;Parent=Physo139583;constitutive=1;rank=5 scaffold_75 . CDS 328269 328467 . - 0 ID=Physo139583;Parent=Physo139583;rank=4 scaffold_75 . exon 328269 328467 . - . ID=Physo139583.4;Parent=Physo139583;constitutive=1;ensembl_phase=2;rank=4 scaffold_75 . CDS 328716 328990 . - 0 ID=Physo139583;Parent=Physo139583;rank=3 scaffold_75 . exon 328716 328990 . - . ID=Physo139583.3;Parent=Physo139583;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_75 . CDS 329069 331861 . - 0 ID=Physo139583;Parent=Physo139583;rank=2 scaffold_75 . exon 329069 331861 . - . ID=Physo139583.2;Parent=Physo139583;constitutive=1;rank=2 scaffold_75 . CDS 331951 332091 . - 0 ID=Physo139583;Parent=Physo139583;rank=1 scaffold_75 . exon 331951 332091 . - . ID=Physo139583.1;Parent=Physo139583;constitutive=1;rank=1 scaffold_75 . repeat_region 342158 344529 . + . description=GypsyPi-1c_I-int scaffold_75 ensembl protein_coding_gene 337286 338409 . + . ID=Physo139584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750081;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 337286 338409 . + . ID=Physo139584;Parent=Physo139584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 337286 337387 . + 0 ID=Physo139584;Parent=Physo139584;rank=1 scaffold_75 . exon 337286 337387 . + . ID=Physo139584.1;Parent=Physo139584;constitutive=1;rank=1 scaffold_75 . CDS 337477 337564 . + 0 ID=Physo139584;Parent=Physo139584;rank=2 scaffold_75 . exon 337477 337564 . + . ID=Physo139584.2;Parent=Physo139584;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_75 . CDS 337596 337708 . + 0 ID=Physo139584;Parent=Physo139584;rank=3 scaffold_75 . exon 337596 337708 . + . ID=Physo139584.3;Parent=Physo139584;constitutive=1;ensembl_phase=1;rank=3 scaffold_75 . CDS 338038 338233 . + 0 ID=Physo139584;Parent=Physo139584;rank=4 scaffold_75 . exon 338038 338233 . + . ID=Physo139584.4;Parent=Physo139584;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_75 . CDS 338387 338409 . + 0 ID=Physo139584;Parent=Physo139584;rank=5 scaffold_75 . exon 338387 338409 . + . ID=Physo139584.5;Parent=Physo139584;constitutive=1;ensembl_phase=1;rank=5 scaffold_75 ensembl protein_coding_gene 339444 345217 . + . ID=Physo139585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750082;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 339444 345217 . + . ID=Physo139585;Parent=Physo139585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 339444 340253 . + 0 ID=Physo139585;Parent=Physo139585;rank=1 scaffold_75 . exon 339444 340253 . + . ID=Physo139585.1;Parent=Physo139585;constitutive=1;rank=1 scaffold_75 . CDS 340730 341252 . + 0 ID=Physo139585;Parent=Physo139585;rank=2 scaffold_75 . exon 340730 341252 . + . ID=Physo139585.2;Parent=Physo139585;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_75 . CDS 341470 341745 . + 0 ID=Physo139585;Parent=Physo139585;rank=3 scaffold_75 . exon 341470 341745 . + . ID=Physo139585.3;Parent=Physo139585;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_75 . CDS 342010 342738 . + 0 ID=Physo139585;Parent=Physo139585;rank=4 scaffold_75 . exon 342010 342738 . + . ID=Physo139585.4;Parent=Physo139585;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_75 . CDS 342833 344249 . + 0 ID=Physo139585;Parent=Physo139585;rank=5 scaffold_75 . exon 342833 344249 . + . ID=Physo139585.5;Parent=Physo139585;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_75 . CDS 344382 344916 . + 0 ID=Physo139585;Parent=Physo139585;rank=6 scaffold_75 . exon 344382 344916 . + . ID=Physo139585.6;Parent=Physo139585;constitutive=1;ensembl_phase=2;rank=6 scaffold_75 . CDS 345062 345217 . + 0 ID=Physo139585;Parent=Physo139585;rank=7 scaffold_75 . repeat_region 347781 347794 . ? . description=dust scaffold_75 . repeat_region 350289 350297 . ? . description=dust scaffold_75 . repeat_region 350331 350472 . ? . description=trf scaffold_75 . repeat_region 350390 350430 . ? . description=trf scaffold_75 . repeat_region 351674 351700 . ? . description=trf scaffold_75 . repeat_region 352549 352576 . ? . description=trf scaffold_75 . biological_region 353230 353231 0.999 + . logic_name=eponine scaffold_75 . biological_region 353768 353770 0.999 + . logic_name=eponine scaffold_75 . repeat_region 354086 354438 . ? . description=trf scaffold_75 . biological_region 354446 354450 0.999 - . logic_name=eponine scaffold_75 . biological_region 354670 354673 0.999 + . logic_name=eponine scaffold_75 . exon 345062 345217 . + . ID=Physo139585.7;Parent=Physo139585;constitutive=1;rank=7 scaffold_75 ensembl protein_coding_gene 350535 352799 . - . ID=Physo139586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750083;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 350535 352799 . - . ID=Physo139586;Parent=Physo139586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 350535 350761 . - 0 ID=Physo139586;Parent=Physo139586;rank=4 scaffold_75 . exon 350535 350761 . - . ID=Physo139586.4;Parent=Physo139586;constitutive=1;ensembl_phase=1;rank=4 scaffold_75 . CDS 350860 351508 . - 0 ID=Physo139586;Parent=Physo139586;rank=3 scaffold_75 . exon 350860 351508 . - . ID=Physo139586.3;Parent=Physo139586;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_75 . CDS 351772 352515 . - 0 ID=Physo139586;Parent=Physo139586;rank=2 scaffold_75 . exon 351772 352515 . - . ID=Physo139586.2;Parent=Physo139586;constitutive=1;rank=2 scaffold_75 . CDS 352542 352799 . - 0 ID=Physo139586;Parent=Physo139586;rank=1 scaffold_75 . exon 352542 352799 . - . ID=Physo139586.1;Parent=Physo139586;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 354014 354448 . - . ID=Physo139587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750084;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 354014 354448 . - . ID=Physo139587;Parent=Physo139587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 354014 354448 . - 0 ID=Physo139587;Parent=Physo139587;rank=1 scaffold_75 . exon 354014 354448 . - . ID=Physo139587.1;Parent=Physo139587;constitutive=1;rank=1 scaffold_75 ensembl protein_coding_gene 356719 359385 . + . ID=Physo139588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750085;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 356719 359385 . + . ID=Physo139588;Parent=Physo139588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 356719 356758 . + 0 ID=Physo139588;Parent=Physo139588;rank=1 scaffold_75 . exon 356719 356758 . + . ID=Physo139588.1;Parent=Physo139588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_75 . CDS 357193 357272 . + 0 ID=Physo139588;Parent=Physo139588;rank=2 scaffold_75 . exon 357193 357272 . + . ID=Physo139588.2;Parent=Physo139588;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 357387 358148 . + 0 ID=Physo139588;Parent=Physo139588;rank=3 scaffold_75 . exon 357387 358148 . + . ID=Physo139588.3;Parent=Physo139588;constitutive=1;rank=3 scaffold_75 . CDS 358412 359060 . + 0 ID=Physo139588;Parent=Physo139588;rank=4 scaffold_75 . exon 358412 359060 . + . ID=Physo139588.4;Parent=Physo139588;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_75 . CDS 359159 359385 . + 0 ID=Physo139588;Parent=Physo139588;rank=5 scaffold_75 . exon 359159 359385 . + . ID=Physo139588.5;Parent=Physo139588;constitutive=1;ensembl_phase=1;rank=5 scaffold_75 ensembl protein_coding_gene 363787 364251 . - . ID=Physo139589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_750086;logic_name=jgi_physo1_1 scaffold_75 ensembl transcript 363787 364251 . - . ID=Physo139589;Parent=Physo139589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_75 . CDS 363787 364079 . - 0 ID=Physo139589;Parent=Physo139589;rank=2 scaffold_75 . exon 363787 364079 . - . ID=Physo139589.2;Parent=Physo139589;constitutive=1;ensembl_phase=1;rank=2 scaffold_75 . CDS 364197 364251 . - 0 ID=Physo139589;Parent=Physo139589;rank=1 scaffold_75 . exon 364197 364251 . - . ID=Physo139589.1;Parent=Physo139589;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_83 1 368829 scaffold_83 . biological_region 1058 1061 0.999 - . logic_name=eponine scaffold_83 . biological_region 2871 2874 0.999 + . logic_name=eponine scaffold_83 . repeat_region 3368 3645 . - . description=GypsyPi-1c_I-int scaffold_83 . repeat_region 3776 3795 . ? . description=dust scaffold_83 . repeat_region 3776 3795 . ? . description=trf scaffold_83 . repeat_region 3867 6239 . - . description=GypsyPi-1c_I-int scaffold_83 . biological_region 6529 6532 0.999 - . logic_name=eponine scaffold_83 . biological_region 6585 6589 0.999 + . logic_name=eponine scaffold_83 . biological_region 6608 6612 0.999 - . logic_name=eponine scaffold_83 . biological_region 6922 6922 0.999 - . logic_name=eponine scaffold_83 . biological_region 7007 7010 0.999 - . logic_name=eponine scaffold_83 . repeat_region 7820 8026 . - . description=GypsyPi-1c_I-int scaffold_83 . repeat_region 9629 9659 . ? . description=trf scaffold_83 . repeat_region 9728 9736 . ? . description=dust scaffold_83 ensembl protein_coding_gene 3763 6521 . - . ID=Physo140194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830001;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 3763 6521 . - . ID=Physo140194;Parent=Physo140194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 3763 5145 . - 0 ID=Physo140194;Parent=Physo140194;rank=4 scaffold_83 . exon 3763 5145 . - . ID=Physo140194.4;Parent=Physo140194;constitutive=1;rank=4 scaffold_83 . CDS 5485 5890 . - 0 ID=Physo140194;Parent=Physo140194;rank=3 scaffold_83 . exon 5485 5890 . - . ID=Physo140194.3;Parent=Physo140194;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 . CDS 5979 6430 . - 0 ID=Physo140194;Parent=Physo140194;rank=2 scaffold_83 . exon 5979 6430 . - . ID=Physo140194.2;Parent=Physo140194;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_83 . CDS 6486 6521 . - 0 ID=Physo140194;Parent=Physo140194;rank=1 scaffold_83 . exon 6486 6521 . - . ID=Physo140194.1;Parent=Physo140194;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 13119 15647 . + . ID=Physo140195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830002;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 13119 15647 . + . ID=Physo140195;Parent=Physo140195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 13119 13343 . + 0 ID=Physo140195;Parent=Physo140195;rank=1 scaffold_83 . exon 13119 13343 . + . ID=Physo140195.1;Parent=Physo140195;constitutive=1;rank=1 scaffold_83 . CDS 13434 13637 . + 0 ID=Physo140195;Parent=Physo140195;rank=2 scaffold_83 . exon 13434 13637 . + . ID=Physo140195.2;Parent=Physo140195;constitutive=1;rank=2 scaffold_83 . CDS 13698 13868 . + 0 ID=Physo140195;Parent=Physo140195;rank=3 scaffold_83 . exon 13698 13868 . + . ID=Physo140195.3;Parent=Physo140195;constitutive=1;rank=3 scaffold_83 . CDS 13943 14095 . + 0 ID=Physo140195;Parent=Physo140195;rank=4 scaffold_83 . exon 13943 14095 . + . ID=Physo140195.4;Parent=Physo140195;constitutive=1;rank=4 scaffold_83 . CDS 14120 14330 . + 0 ID=Physo140195;Parent=Physo140195;rank=5 scaffold_83 . exon 14120 14330 . + . ID=Physo140195.5;Parent=Physo140195;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_83 . CDS 14609 15366 . + 0 ID=Physo140195;Parent=Physo140195;rank=6 scaffold_83 . exon 14609 15647 . + . ID=Physo140195.6;Parent=Physo140195;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_83 ensembl protein_coding_gene 26543 28255 . - . ID=Physo140196;biotype=protein_coding;description=PsAvh158 [Source:UniProtKB/TrEMBL%3BAcc:E0W5G8];external_name=estExt_fgenesh1_pg.C_830003;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 26543 28255 . - . ID=Physo140196;Parent=Physo140196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 26543 28255 . - 0 ID=Physo140196;Parent=Physo140196;rank=1 scaffold_83 . exon 26543 28255 . - . ID=Physo140196.1;Parent=Physo140196;constitutive=1;rank=1 scaffold_83 . repeat_region 31595 31664 . ? . description=trf scaffold_83 . repeat_region 31605 31661 . ? . description=dust scaffold_83 . repeat_region 31610 31674 . ? . description=trf scaffold_83 . repeat_region 31614 31661 . ? . description=trf scaffold_83 . repeat_region 33674 33681 . ? . description=dust scaffold_83 . repeat_region 35141 35148 . ? . description=dust scaffold_83 . repeat_region 37691 37726 . ? . description=trf scaffold_83 . repeat_region 37734 37792 . ? . description=dust scaffold_83 . repeat_region 37766 37786 . ? . description=trf scaffold_83 . repeat_region 38458 38498 . ? . description=dust scaffold_83 . repeat_region 38459 38492 . ? . description=trf scaffold_83 . biological_region 39166 39170 0.999 - . logic_name=eponine scaffold_83 . biological_region 39538 39540 0.999 + . logic_name=eponine scaffold_83 . biological_region 39599 39602 0.999 - . logic_name=eponine scaffold_83 ensembl protein_coding_gene 38510 41517 . + . ID=Physo140197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830004;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 38510 41517 . + . ID=Physo140197;Parent=Physo140197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 38510 38605 . + 0 ID=Physo140197;Parent=Physo140197;rank=1 scaffold_83 . exon 38510 38605 . + . ID=Physo140197.1;Parent=Physo140197;constitutive=1;rank=1 scaffold_83 . CDS 38677 38740 . + 0 ID=Physo140197;Parent=Physo140197;rank=2 scaffold_83 . exon 38677 38740 . + . ID=Physo140197.2;Parent=Physo140197;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_83 . CDS 38800 38873 . + 0 ID=Physo140197;Parent=Physo140197;rank=3 scaffold_83 . exon 38800 38873 . + . ID=Physo140197.3;Parent=Physo140197;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 38934 39391 . + 0 ID=Physo140197;Parent=Physo140197;rank=4 scaffold_83 . exon 38934 39391 . + . ID=Physo140197.4;Parent=Physo140197;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_83 . CDS 39735 39760 . + 0 ID=Physo140197;Parent=Physo140197;rank=5 scaffold_83 . exon 39735 39760 . + . ID=Physo140197.5;Parent=Physo140197;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_83 . CDS 39838 40127 . + 0 ID=Physo140197;Parent=Physo140197;rank=6 scaffold_83 . exon 39838 40127 . + . ID=Physo140197.6;Parent=Physo140197;constitutive=1;ensembl_phase=1;rank=6 scaffold_83 . CDS 40189 41517 . + 0 ID=Physo140197;Parent=Physo140197;rank=7 scaffold_83 ensembl protein_coding_gene 41759 41989 . + . ID=Physo120879;biotype=protein_coding;external_name=estExt_Genewise1.C_830032;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 41759 41989 . + . ID=Physo120879;Parent=Physo120879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 41759 41989 . + 0 ID=Physo120879;Parent=Physo120879;rank=1 scaffold_83 . exon 41759 41989 . + . ID=Physo120879.1;Parent=Physo120879;constitutive=1;rank=1 scaffold_83 . exon 40189 41517 . + . ID=Physo140197.7;Parent=Physo140197;constitutive=1;rank=7 scaffold_83 ensembl protein_coding_gene 43002 44285 . - . ID=Physo140199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830006;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 43002 44285 . - . ID=Physo140199;Parent=Physo140199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 43002 43067 . - 0 ID=Physo140199;Parent=Physo140199;rank=3 scaffold_83 . exon 43002 43067 . - . ID=Physo140199.3;Parent=Physo140199;constitutive=1;rank=3 scaffold_83 . CDS 43139 43414 . - 0 ID=Physo140199;Parent=Physo140199;rank=2 scaffold_83 . exon 43139 43414 . - . ID=Physo140199.2;Parent=Physo140199;constitutive=1;rank=2 scaffold_83 . CDS 43485 43928 . - 0 ID=Physo140199;Parent=Physo140199;rank=1 scaffold_83 . exon 43485 44285 . - . ID=Physo140199.1;Parent=Physo140199;constitutive=1;ensembl_phase=-1;rank=1 scaffold_83 ensembl protein_coding_gene 44944 45805 . - . ID=Physo140200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830007;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 44944 45805 . - . ID=Physo140200;Parent=Physo140200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 44944 45805 . - . ID=Physo140200.1;Parent=Physo140200;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_83 . CDS 45044 45805 . - 0 ID=Physo140200;Parent=Physo140200;rank=1 scaffold_83 ensembl protein_coding_gene 47758 49482 . - . ID=Physo140201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830008;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 47758 49482 . - . ID=Physo140201;Parent=Physo140201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 47758 49482 . - 0 ID=Physo140201;Parent=Physo140201;rank=1 scaffold_83 . exon 47758 49482 . - . ID=Physo140201.1;Parent=Physo140201;constitutive=1;rank=1 scaffold_83 . biological_region 50584 50584 0.999 - . logic_name=eponine scaffold_83 . biological_region 50620 50629 0.999 + . logic_name=eponine scaffold_83 . biological_region 50697 50701 0.999 + . logic_name=eponine scaffold_83 . biological_region 50732 50734 0.999 + . logic_name=eponine scaffold_83 . repeat_region 50772 50805 . ? . description=dust scaffold_83 . repeat_region 50772 50805 . ? . description=trf scaffold_83 . repeat_region 50772 50808 . + . description=(CATCG)n scaffold_83 . biological_region 50798 50802 0.999 - . logic_name=eponine scaffold_83 . biological_region 51184 51187 0.999 + . logic_name=eponine scaffold_83 . biological_region 51222 51228 0.999 + . logic_name=eponine scaffold_83 . biological_region 51407 51407 0.999 + . logic_name=eponine scaffold_83 . biological_region 51415 51417 0.999 - . logic_name=eponine scaffold_83 . biological_region 51511 51512 0.999 - . logic_name=eponine scaffold_83 . biological_region 52399 52399 0.999 + . logic_name=eponine scaffold_83 . repeat_region 52661 52722 . ? . description=dust scaffold_83 . biological_region 58572 58574 0.999 + . logic_name=eponine scaffold_83 . biological_region 59227 59232 0.999 - . logic_name=eponine scaffold_83 . biological_region 59388 59393 0.999 - . logic_name=eponine scaffold_83 ensembl protein_coding_gene 51151 51719 . - . ID=Physo140202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830009;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 51151 51719 . - . ID=Physo140202;Parent=Physo140202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 51151 51606 . - 0 ID=Physo140202;Parent=Physo140202;rank=2 scaffold_83 . exon 51151 51606 . - . ID=Physo140202.2;Parent=Physo140202;constitutive=1;rank=2 scaffold_83 . CDS 51681 51719 . - 0 ID=Physo140202;Parent=Physo140202;rank=1 scaffold_83 . exon 51681 51719 . - . ID=Physo140202.1;Parent=Physo140202;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 52971 70720 . - . ID=Physo140203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830010;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 52971 70720 . - . ID=Physo140203;Parent=Physo140203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 52971 59848 . - 0 ID=Physo140203;Parent=Physo140203;rank=16 scaffold_83 . exon 52971 59848 . - . ID=Physo140203.16;Parent=Physo140203;constitutive=1;ensembl_phase=1;rank=16 scaffold_83 . CDS 60067 63022 . - 0 ID=Physo140203;Parent=Physo140203;rank=15 scaffold_83 . CDS 63299 64747 . - 0 ID=Physo140203;Parent=Physo140203;rank=14 scaffold_83 . CDS 64808 65026 . - 0 ID=Physo140203;Parent=Physo140203;rank=13 scaffold_83 . CDS 65095 65265 . - 0 ID=Physo140203;Parent=Physo140203;rank=12 scaffold_83 . CDS 65345 66322 . - 0 ID=Physo140203;Parent=Physo140203;rank=11 scaffold_83 . CDS 66385 66633 . - 0 ID=Physo140203;Parent=Physo140203;rank=10 scaffold_83 . CDS 66719 66946 . - 0 ID=Physo140203;Parent=Physo140203;rank=9 scaffold_83 . CDS 67027 67275 . - 0 ID=Physo140203;Parent=Physo140203;rank=8 scaffold_83 . CDS 67352 69019 . - 0 ID=Physo140203;Parent=Physo140203;rank=7 scaffold_83 . CDS 69086 69308 . - 0 ID=Physo140203;Parent=Physo140203;rank=6 scaffold_83 . CDS 69371 69561 . - 0 ID=Physo140203;Parent=Physo140203;rank=5 scaffold_83 . CDS 69619 69663 . - 0 ID=Physo140203;Parent=Physo140203;rank=4 scaffold_83 . CDS 70130 70248 . - 0 ID=Physo140203;Parent=Physo140203;rank=3 scaffold_83 . CDS 70313 70451 . - 0 ID=Physo140203;Parent=Physo140203;rank=2 scaffold_83 . CDS 70526 70720 . - 0 ID=Physo140203;Parent=Physo140203;rank=1 scaffold_83 . exon 60067 63022 . - . ID=Physo140203.15;Parent=Physo140203;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_83 . exon 63299 64747 . - . ID=Physo140203.14;Parent=Physo140203;constitutive=1;rank=14 scaffold_83 . exon 64808 65026 . - . ID=Physo140203.13;Parent=Physo140203;constitutive=1;rank=13 scaffold_83 . exon 65095 65265 . - . ID=Physo140203.12;Parent=Physo140203;constitutive=1;rank=12 scaffold_83 . exon 65345 66322 . - . ID=Physo140203.11;Parent=Physo140203;constitutive=1;rank=11 scaffold_83 . exon 66385 66633 . - . ID=Physo140203.10;Parent=Physo140203;constitutive=1;rank=10 scaffold_83 . exon 66719 66946 . - . ID=Physo140203.9;Parent=Physo140203;constitutive=1;rank=9 scaffold_83 . exon 67027 67275 . - . ID=Physo140203.8;Parent=Physo140203;constitutive=1;rank=8 scaffold_83 . exon 67352 69019 . - . ID=Physo140203.7;Parent=Physo140203;constitutive=1;rank=7 scaffold_83 . exon 69086 69308 . - . ID=Physo140203.6;Parent=Physo140203;constitutive=1;ensembl_phase=2;rank=6 scaffold_83 . exon 69371 69561 . - . ID=Physo140203.5;Parent=Physo140203;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_83 . exon 69619 69663 . - . ID=Physo140203.4;Parent=Physo140203;constitutive=1;rank=4 scaffold_83 . biological_region 69933 69934 0.999 - . logic_name=eponine scaffold_83 . repeat_region 70735 70754 . ? . description=trf scaffold_83 . repeat_region 70896 70903 . ? . description=dust scaffold_83 . repeat_region 71214 71252 . ? . description=trf scaffold_83 . repeat_region 73224 73236 . ? . description=dust scaffold_83 . repeat_region 73505 73553 . ? . description=trf scaffold_83 . repeat_region 74449 74456 . ? . description=dust scaffold_83 . repeat_region 75790 75797 . ? . description=dust scaffold_83 . biological_region 76591 76597 0.999 - . logic_name=eponine scaffold_83 . repeat_region 79388 79395 . ? . description=dust scaffold_83 ensembl protein_coding_gene 79121 79240 . - . ID=Physo120880;biotype=protein_coding;external_name=estExt_Genewise1.C_830033;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 79121 79240 . - . ID=Physo120880;Parent=Physo120880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 79121 79240 . - 0 ID=Physo120880;Parent=Physo120880;rank=1 scaffold_83 . exon 79121 79240 . - . ID=Physo120880.1;Parent=Physo120880;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 52971 70720 . - . ID=Physo140203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830010;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 52971 70720 . - . ID=Physo140203;Parent=Physo140203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 52971 59848 . - 0 ID=Physo140203;Parent=Physo140203;rank=16 scaffold_83 . CDS 60067 63022 . - 0 ID=Physo140203;Parent=Physo140203;rank=15 scaffold_83 . CDS 63299 64747 . - 0 ID=Physo140203;Parent=Physo140203;rank=14 scaffold_83 . CDS 64808 65026 . - 0 ID=Physo140203;Parent=Physo140203;rank=13 scaffold_83 . CDS 65095 65265 . - 0 ID=Physo140203;Parent=Physo140203;rank=12 scaffold_83 . CDS 65345 66322 . - 0 ID=Physo140203;Parent=Physo140203;rank=11 scaffold_83 . CDS 66385 66633 . - 0 ID=Physo140203;Parent=Physo140203;rank=10 scaffold_83 . CDS 66719 66946 . - 0 ID=Physo140203;Parent=Physo140203;rank=9 scaffold_83 . CDS 67027 67275 . - 0 ID=Physo140203;Parent=Physo140203;rank=8 scaffold_83 . CDS 67352 69019 . - 0 ID=Physo140203;Parent=Physo140203;rank=7 scaffold_83 . CDS 69086 69308 . - 0 ID=Physo140203;Parent=Physo140203;rank=6 scaffold_83 . CDS 69371 69561 . - 0 ID=Physo140203;Parent=Physo140203;rank=5 scaffold_83 . CDS 69619 69663 . - 0 ID=Physo140203;Parent=Physo140203;rank=4 scaffold_83 . CDS 70130 70248 . - 0 ID=Physo140203;Parent=Physo140203;rank=3 scaffold_83 . exon 70130 70248 . - . ID=Physo140203.3;Parent=Physo140203;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 70313 70451 . - 0 ID=Physo140203;Parent=Physo140203;rank=2 scaffold_83 . exon 70313 70451 . - . ID=Physo140203.2;Parent=Physo140203;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_83 . CDS 70526 70720 . - 0 ID=Physo140203;Parent=Physo140203;rank=1 scaffold_83 . exon 70526 70720 . - . ID=Physo140203.1;Parent=Physo140203;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 71046 71444 . - . ID=Physo140204;biotype=protein_coding;description=PsAvh138 [Source:UniProtKB/TrEMBL%3BAcc:E0W5G9];external_name=estExt_fgenesh1_pg.C_830011;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 71046 71444 . - . ID=Physo140204;Parent=Physo140204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 71046 71444 . - 0 ID=Physo140204;Parent=Physo140204;rank=1 scaffold_83 . exon 71046 71444 . - . ID=Physo140204.1;Parent=Physo140204;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 76473 77204 . - . ID=Physo140205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830012;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 76473 77204 . - . ID=Physo140205;Parent=Physo140205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 76473 77204 . - 0 ID=Physo140205;Parent=Physo140205;rank=1 scaffold_83 . exon 76473 77204 . - . ID=Physo140205.1;Parent=Physo140205;constitutive=1;rank=1 scaffold_83 . repeat_region 87320 88550 . - . description=GypsyPi-1c_I-int scaffold_83 ensembl protein_coding_gene 87286 87897 . - . ID=Physo109275;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_830001;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 87286 87897 . - . ID=Physo109275;Parent=Physo109275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 87286 87897 . - 0 ID=Physo109275;Parent=Physo109275;rank=1 scaffold_83 . exon 87286 87897 . - . ID=Physo109275.1;Parent=Physo109275;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 80829 83930 . - . ID=Physo140206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830013;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 80829 83930 . - . ID=Physo140206;Parent=Physo140206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 80829 81197 . - 0 ID=Physo140206;Parent=Physo140206;rank=8 scaffold_83 . exon 80829 81197 . - . ID=Physo140206.8;Parent=Physo140206;constitutive=1;rank=8 scaffold_83 . CDS 81259 81340 . - 0 ID=Physo140206;Parent=Physo140206;rank=7 scaffold_83 . exon 81259 81340 . - . ID=Physo140206.7;Parent=Physo140206;constitutive=1;ensembl_phase=2;rank=7 scaffold_83 . CDS 81413 81574 . - 0 ID=Physo140206;Parent=Physo140206;rank=6 scaffold_83 . exon 81413 81574 . - . ID=Physo140206.6;Parent=Physo140206;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_83 . CDS 82048 82188 . - 0 ID=Physo140206;Parent=Physo140206;rank=5 scaffold_83 . exon 82048 82188 . - . ID=Physo140206.5;Parent=Physo140206;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_83 . CDS 82289 82480 . - 0 ID=Physo140206;Parent=Physo140206;rank=4 scaffold_83 . exon 82289 82480 . - . ID=Physo140206.4;Parent=Physo140206;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_83 . CDS 82584 82905 . - 0 ID=Physo140206;Parent=Physo140206;rank=3 scaffold_83 . exon 82584 82905 . - . ID=Physo140206.3;Parent=Physo140206;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_83 . CDS 82960 82967 . - 0 ID=Physo140206;Parent=Physo140206;rank=2 scaffold_83 . exon 82960 82967 . - . ID=Physo140206.2;Parent=Physo140206;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_83 . CDS 83146 83930 . - 0 ID=Physo140206;Parent=Physo140206;rank=1 scaffold_83 . exon 83146 83930 . - . ID=Physo140206.1;Parent=Physo140206;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 ensembl protein_coding_gene 84611 86830 . - . ID=Physo140207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830014;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 84611 86830 . - . ID=Physo140207;Parent=Physo140207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 84611 86830 . - 0 ID=Physo140207;Parent=Physo140207;rank=1 scaffold_83 . exon 84611 86830 . - . ID=Physo140207.1;Parent=Physo140207;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 88047 90794 . - . ID=Physo140209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830016;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 88047 90794 . - . ID=Physo140209;Parent=Physo140209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 88047 88768 . - . ID=Physo140209.3;Parent=Physo140209;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_83 . CDS 88049 88768 . - 0 ID=Physo140209;Parent=Physo140209;rank=3 scaffold_83 . CDS 89020 89987 . - 0 ID=Physo140209;Parent=Physo140209;rank=2 scaffold_83 . exon 89020 89987 . - . ID=Physo140209.2;Parent=Physo140209;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 . CDS 90488 90794 . - 0 ID=Physo140209;Parent=Physo140209;rank=1 scaffold_83 . biological_region 93261 93265 0.999 + . logic_name=eponine scaffold_83 . repeat_region 93809 93841 . ? . description=trf scaffold_83 . biological_region 93988 93989 0.999 + . logic_name=eponine scaffold_83 . repeat_region 94087 94393 . ? . description=trf scaffold_83 . biological_region 94407 94414 0.999 + . logic_name=eponine scaffold_83 . repeat_region 94419 94493 . ? . description=trf scaffold_83 . biological_region 94453 94453 0.999 + . logic_name=eponine scaffold_83 . repeat_region 94466 94521 . ? . description=trf scaffold_83 . repeat_region 94528 105601 . ? . description=dust scaffold_83 . exon 90488 90794 . - . ID=Physo140209.1;Parent=Physo140209;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 ensembl protein_coding_gene 106169 107153 . + . ID=Physo140210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830017;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 106169 107153 . + . ID=Physo140210;Parent=Physo140210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 106169 106934 . + 0 ID=Physo140210;Parent=Physo140210;rank=1 scaffold_83 . exon 106169 106934 . + . ID=Physo140210.1;Parent=Physo140210;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 . CDS 107146 107153 . + 0 ID=Physo140210;Parent=Physo140210;rank=2 scaffold_83 . exon 107146 107153 . + . ID=Physo140210.2;Parent=Physo140210;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 ensembl protein_coding_gene 108967 109704 . - . ID=Physo140211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830018;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 108967 109704 . - . ID=Physo140211;Parent=Physo140211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 108967 109704 . - 0 ID=Physo140211;Parent=Physo140211;rank=1 scaffold_83 . exon 108967 109704 . - . ID=Physo140211.1;Parent=Physo140211;constitutive=1;rank=1 scaffold_83 . biological_region 110194 110195 0.999 - . logic_name=eponine scaffold_83 . biological_region 113313 113314 0.999 - . logic_name=eponine scaffold_83 . biological_region 113388 113388 0.999 - . logic_name=eponine scaffold_83 . repeat_region 116954 116987 . ? . description=trf scaffold_83 . repeat_region 117216 117254 . ? . description=trf scaffold_83 . biological_region 117525 117526 0.999 + . logic_name=eponine scaffold_83 . biological_region 117580 117590 0.999 - . logic_name=eponine scaffold_83 . repeat_region 117606 117614 . ? . description=dust scaffold_83 . repeat_region 117881 117907 . ? . description=trf scaffold_83 . repeat_region 118681 118690 . ? . description=dust scaffold_83 ensembl protein_coding_gene 110035 112631 . + . ID=Physo140212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830019;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 110035 112631 . + . ID=Physo140212;Parent=Physo140212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 110035 110507 . + 0 ID=Physo140212;Parent=Physo140212;rank=1 scaffold_83 . exon 110035 110507 . + . ID=Physo140212.1;Parent=Physo140212;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 110888 112631 . + 0 ID=Physo140212;Parent=Physo140212;rank=2 scaffold_83 . exon 110888 112631 . + . ID=Physo140212.2;Parent=Physo140212;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 ensembl protein_coding_gene 112813 115797 . + . ID=Physo140213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830020;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 112813 115797 . + . ID=Physo140213;Parent=Physo140213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 112813 115584 . + 0 ID=Physo140213;Parent=Physo140213;rank=1 scaffold_83 . exon 112813 115797 . + . ID=Physo140213.1;Parent=Physo140213;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_83 ensembl protein_coding_gene 120324 121151 . - . ID=Physo140214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830021;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 120324 121151 . - . ID=Physo140214;Parent=Physo140214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 120324 121103 . - 0 ID=Physo140214;Parent=Physo140214;rank=1 scaffold_83 . exon 120324 121151 . - . ID=Physo140214.1;Parent=Physo140214;constitutive=1;ensembl_phase=-1;rank=1 scaffold_83 ensembl protein_coding_gene 122042 122812 . + . ID=Physo140215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830022;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 122042 122812 . + . ID=Physo140215;Parent=Physo140215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 122042 122812 . + 0 ID=Physo140215;Parent=Physo140215;rank=1 scaffold_83 . exon 122042 122812 . + . ID=Physo140215.1;Parent=Physo140215;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 123909 125045 . + . ID=Physo140216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830023;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 123909 125045 . + . ID=Physo140216;Parent=Physo140216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 123909 123937 . + 0 ID=Physo140216;Parent=Physo140216;rank=1 scaffold_83 . exon 123909 123937 . + . ID=Physo140216.1;Parent=Physo140216;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 124418 125045 . + 0 ID=Physo140216;Parent=Physo140216;rank=2 scaffold_83 . exon 124418 125045 . + . ID=Physo140216.2;Parent=Physo140216;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 ensembl protein_coding_gene 126356 129022 . + . ID=Physo140217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830024;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 126356 129022 . + . ID=Physo140217;Parent=Physo140217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 126356 126363 . + 0 ID=Physo140217;Parent=Physo140217;rank=1 scaffold_83 . exon 126356 126363 . + . ID=Physo140217.1;Parent=Physo140217;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 126765 127636 . + 0 ID=Physo140217;Parent=Physo140217;rank=2 scaffold_83 . exon 126765 127636 . + . ID=Physo140217.2;Parent=Physo140217;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_83 . CDS 127682 127824 . + 0 ID=Physo140217;Parent=Physo140217;rank=3 scaffold_83 . exon 127682 127824 . + . ID=Physo140217.3;Parent=Physo140217;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 128168 129022 . + 0 ID=Physo140217;Parent=Physo140217;rank=4 scaffold_83 . exon 128168 129022 . + . ID=Physo140217.4;Parent=Physo140217;constitutive=1;rank=4 scaffold_83 . repeat_region 130132 130155 . ? . description=trf scaffold_83 . biological_region 130398 130400 0.999 + . logic_name=eponine scaffold_83 . biological_region 130445 130448 0.999 - . logic_name=eponine scaffold_83 . biological_region 130531 130535 0.999 + . logic_name=eponine scaffold_83 . biological_region 130632 130638 0.999 + . logic_name=eponine scaffold_83 . biological_region 130666 130671 0.999 + . logic_name=eponine scaffold_83 . biological_region 130666 130671 0.999 - . logic_name=eponine scaffold_83 . biological_region 131409 131410 0.999 + . logic_name=eponine scaffold_83 . biological_region 131433 131433 0.999 + . logic_name=eponine scaffold_83 . biological_region 131437 131442 0.999 + . logic_name=eponine scaffold_83 . repeat_region 131456 131538 . ? . description=trf scaffold_83 . repeat_region 131456 131554 . ? . description=trf scaffold_83 . biological_region 131478 131480 0.999 - . logic_name=eponine scaffold_83 . biological_region 131529 131535 0.999 - . logic_name=eponine scaffold_83 . biological_region 131763 131764 0.999 + . logic_name=eponine scaffold_83 . biological_region 132041 132049 0.999 - . logic_name=eponine scaffold_83 . biological_region 132119 132125 0.999 + . logic_name=eponine scaffold_83 . repeat_region 132121 132773 . + . description=GypsyPi-1c_I-int scaffold_83 . biological_region 132127 132132 0.999 - . logic_name=eponine scaffold_83 . biological_region 132211 132216 0.999 - . logic_name=eponine scaffold_83 . biological_region 133096 133096 0.999 - . logic_name=eponine scaffold_83 . repeat_region 133426 133602 . ? . description=trf scaffold_83 . repeat_region 133427 133602 . ? . description=trf scaffold_83 . repeat_region 133987 134657 . + . description=GypsyPi-1c_I-int scaffold_83 . biological_region 134282 134282 0.999 - . logic_name=eponine scaffold_83 . repeat_region 135719 135760 . ? . description=trf scaffold_83 . repeat_region 137038 137612 . + . description=GypsyPi-1c_I-int scaffold_83 . biological_region 137572 137581 0.999 - . logic_name=eponine scaffold_83 . biological_region 137601 137606 0.999 - . logic_name=eponine scaffold_83 . biological_region 139005 139008 0.999 + . logic_name=eponine scaffold_83 . biological_region 139046 139051 0.999 + . logic_name=eponine scaffold_83 . biological_region 139125 139128 0.999 + . logic_name=eponine scaffold_83 . biological_region 139129 139131 0.999 - . logic_name=eponine scaffold_83 . biological_region 139190 139194 0.999 - . logic_name=eponine scaffold_83 . biological_region 139217 139221 0.999 - . logic_name=eponine scaffold_83 . biological_region 139243 139246 0.999 + . logic_name=eponine scaffold_83 ensembl protein_coding_gene 129808 132786 . + . ID=Physo140218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830025;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 129808 132786 . + . ID=Physo140218;Parent=Physo140218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 129808 131195 . + 0 ID=Physo140218;Parent=Physo140218;rank=1 scaffold_83 . exon 129808 131195 . + . ID=Physo140218.1;Parent=Physo140218;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 131471 131964 . + 0 ID=Physo140218;Parent=Physo140218;rank=2 scaffold_83 . exon 131471 131964 . + . ID=Physo140218.2;Parent=Physo140218;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_83 . CDS 132070 132484 . + 0 ID=Physo140218;Parent=Physo140218;rank=3 scaffold_83 . exon 132070 132484 . + . ID=Physo140218.3;Parent=Physo140218;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_83 . CDS 132762 132786 . + 0 ID=Physo140218;Parent=Physo140218;rank=4 scaffold_83 . exon 132762 132786 . + . ID=Physo140218.4;Parent=Physo140218;constitutive=1;ensembl_phase=2;rank=4 scaffold_83 ensembl protein_coding_gene 134008 135090 . + . ID=Physo140219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830026;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 134008 135090 . + . ID=Physo140219;Parent=Physo140219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 134008 135090 . + 0 ID=Physo140219;Parent=Physo140219;rank=1 scaffold_83 . exon 134008 135090 . + . ID=Physo140219.1;Parent=Physo140219;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 138256 139656 . - . ID=Physo140220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830027;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 138256 139656 . - . ID=Physo140220;Parent=Physo140220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 138256 138663 . - 0 ID=Physo140220;Parent=Physo140220;rank=3 scaffold_83 . exon 138256 138663 . - . ID=Physo140220.3;Parent=Physo140220;constitutive=1;rank=3 scaffold_83 . CDS 138717 139307 . - 0 ID=Physo140220;Parent=Physo140220;rank=2 scaffold_83 . exon 138717 139307 . - . ID=Physo140220.2;Parent=Physo140220;constitutive=1;rank=2 scaffold_83 . CDS 139342 139656 . - 0 ID=Physo140220;Parent=Physo140220;rank=1 scaffold_83 . exon 139342 139656 . - . ID=Physo140220.1;Parent=Physo140220;constitutive=1;rank=1 scaffold_83 . repeat_region 149483 149491 . ? . description=dust scaffold_83 ensembl protein_coding_gene 141463 142149 . + . ID=Physo140221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830028;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 141463 142149 . + . ID=Physo140221;Parent=Physo140221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 141463 142149 . + 0 ID=Physo140221;Parent=Physo140221;rank=1 scaffold_83 . exon 141463 142149 . + . ID=Physo140221.1;Parent=Physo140221;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 143147 145559 . - . ID=Physo140222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830029;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 143147 145559 . - . ID=Physo140222;Parent=Physo140222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 143147 143634 . - 0 ID=Physo140222;Parent=Physo140222;rank=6 scaffold_83 . exon 143147 143634 . - . ID=Physo140222.6;Parent=Physo140222;constitutive=1;ensembl_phase=1;rank=6 scaffold_83 . CDS 143769 143975 . - 0 ID=Physo140222;Parent=Physo140222;rank=5 scaffold_83 . exon 143769 143975 . - . ID=Physo140222.5;Parent=Physo140222;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_83 . CDS 144077 144128 . - 0 ID=Physo140222;Parent=Physo140222;rank=4 scaffold_83 . exon 144077 144128 . - . ID=Physo140222.4;Parent=Physo140222;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_83 . CDS 144255 144970 . - 0 ID=Physo140222;Parent=Physo140222;rank=3 scaffold_83 . exon 144255 144970 . - . ID=Physo140222.3;Parent=Physo140222;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 145009 145114 . - 0 ID=Physo140222;Parent=Physo140222;rank=2 scaffold_83 . exon 145009 145114 . - . ID=Physo140222.2;Parent=Physo140222;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_83 . CDS 145188 145559 . - 0 ID=Physo140222;Parent=Physo140222;rank=1 scaffold_83 . exon 145188 145559 . - . ID=Physo140222.1;Parent=Physo140222;constitutive=1;rank=1 scaffold_83 . biological_region 152809 152813 0.999 + . logic_name=eponine scaffold_83 . repeat_region 152826 152950 . ? . description=trf scaffold_83 . biological_region 152845 152851 0.999 + . logic_name=eponine scaffold_83 . repeat_region 152851 152950 . ? . description=trf scaffold_83 . biological_region 157616 157619 0.999 + . logic_name=eponine scaffold_83 ensembl protein_coding_gene 155517 156707 . + . ID=Physo140223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830030;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 155517 156707 . + . ID=Physo140223;Parent=Physo140223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 155517 156707 . + 0 ID=Physo140223;Parent=Physo140223;rank=1 scaffold_83 . exon 155517 156707 . + . ID=Physo140223.1;Parent=Physo140223;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 157659 159028 . + . ID=Physo140224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830031;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 157659 159028 . + . ID=Physo140224;Parent=Physo140224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 157659 157785 . + 0 ID=Physo140224;Parent=Physo140224;rank=1 scaffold_83 . exon 157659 157785 . + . ID=Physo140224.1;Parent=Physo140224;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 . CDS 158079 159028 . + 0 ID=Physo140224;Parent=Physo140224;rank=2 scaffold_83 . exon 158079 159028 . + . ID=Physo140224.2;Parent=Physo140224;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 . repeat_region 165740 165747 . ? . description=dust scaffold_83 . repeat_region 168065 168073 . ? . description=dust scaffold_83 . repeat_region 169461 169472 . ? . description=dust scaffold_83 ensembl protein_coding_gene 159812 160608 . - . ID=Physo140225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830032;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 159812 160608 . - . ID=Physo140225;Parent=Physo140225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 159812 160076 . - 0 ID=Physo140225;Parent=Physo140225;rank=2 scaffold_83 . exon 159812 160076 . - . ID=Physo140225.2;Parent=Physo140225;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 . CDS 160148 160608 . - 0 ID=Physo140225;Parent=Physo140225;rank=1 scaffold_83 . exon 160148 160608 . - . ID=Physo140225.1;Parent=Physo140225;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 ensembl protein_coding_gene 166940 167808 . + . ID=Physo140226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830033;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 166940 167808 . + . ID=Physo140226;Parent=Physo140226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 166940 167266 . + 0 ID=Physo140226;Parent=Physo140226;rank=1 scaffold_83 . exon 166940 167266 . + . ID=Physo140226.1;Parent=Physo140226;constitutive=1;rank=1 scaffold_83 . CDS 167350 167808 . + 0 ID=Physo140226;Parent=Physo140226;rank=2 scaffold_83 . exon 167350 167808 . + . ID=Physo140226.2;Parent=Physo140226;constitutive=1;rank=2 scaffold_83 . repeat_region 177831 177865 . ? . description=trf scaffold_83 . repeat_region 177948 177992 . ? . description=trf scaffold_83 . repeat_region 177955 177977 . ? . description=trf scaffold_83 . repeat_region 178196 178257 . ? . description=trf scaffold_83 . repeat_region 178198 178273 . ? . description=trf scaffold_83 ensembl protein_coding_gene 177401 177980 . + . ID=Physo140227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830034;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 177401 177980 . + . ID=Physo140227;Parent=Physo140227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 177401 177564 . + 0 ID=Physo140227;Parent=Physo140227;rank=1 scaffold_83 . exon 177401 177564 . + . ID=Physo140227.1;Parent=Physo140227;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 177677 177980 . + 0 ID=Physo140227;Parent=Physo140227;rank=2 scaffold_83 . exon 177677 177980 . + . ID=Physo140227.2;Parent=Physo140227;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 . biological_region 179650 179650 0.999 - . logic_name=eponine scaffold_83 . biological_region 188760 188765 0.999 + . logic_name=eponine scaffold_83 ensembl protein_coding_gene 182897 185791 . - . ID=Physo140228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830035;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 182897 185791 . - . ID=Physo140228;Parent=Physo140228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 182897 183144 . - 0 ID=Physo140228;Parent=Physo140228;rank=7 scaffold_83 . exon 182897 183144 . - . ID=Physo140228.7;Parent=Physo140228;constitutive=1;ensembl_phase=1;rank=7 scaffold_83 . CDS 183531 183950 . - 0 ID=Physo140228;Parent=Physo140228;rank=6 scaffold_83 . exon 183531 183950 . - . ID=Physo140228.6;Parent=Physo140228;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_83 . CDS 184104 184182 . - 0 ID=Physo140228;Parent=Physo140228;rank=5 scaffold_83 . exon 184104 184182 . - . ID=Physo140228.5;Parent=Physo140228;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_83 . CDS 184254 184354 . - 0 ID=Physo140228;Parent=Physo140228;rank=4 scaffold_83 . exon 184254 184354 . - . ID=Physo140228.4;Parent=Physo140228;constitutive=1;ensembl_phase=1;rank=4 scaffold_83 . CDS 184427 184858 . - 0 ID=Physo140228;Parent=Physo140228;rank=3 scaffold_83 . exon 184427 184858 . - . ID=Physo140228.3;Parent=Physo140228;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 185242 185289 . - 0 ID=Physo140228;Parent=Physo140228;rank=2 scaffold_83 . exon 185242 185289 . - . ID=Physo140228.2;Parent=Physo140228;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_83 . CDS 185374 185791 . - 0 ID=Physo140228;Parent=Physo140228;rank=1 scaffold_83 . exon 185374 185791 . - . ID=Physo140228.1;Parent=Physo140228;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 ensembl protein_coding_gene 188148 191440 . - . ID=Physo140229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830036;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 188148 191440 . - . ID=Physo140229;Parent=Physo140229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 188148 188197 . - 0 ID=Physo140229;Parent=Physo140229;rank=8 scaffold_83 . exon 188148 188197 . - . ID=Physo140229.8;Parent=Physo140229;constitutive=1;ensembl_phase=1;rank=8 scaffold_83 . CDS 188274 189936 . - 0 ID=Physo140229;Parent=Physo140229;rank=7 scaffold_83 . exon 188274 189936 . - . ID=Physo140229.7;Parent=Physo140229;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_83 . CDS 189999 190149 . - 0 ID=Physo140229;Parent=Physo140229;rank=6 scaffold_83 . CDS 190219 190571 . - 0 ID=Physo140229;Parent=Physo140229;rank=5 scaffold_83 . CDS 190641 190849 . - 0 ID=Physo140229;Parent=Physo140229;rank=4 scaffold_83 . CDS 190984 191122 . - 0 ID=Physo140229;Parent=Physo140229;rank=3 scaffold_83 . CDS 191228 191271 . - 0 ID=Physo140229;Parent=Physo140229;rank=2 scaffold_83 . CDS 191377 191401 . - 0 ID=Physo140229;Parent=Physo140229;rank=1 scaffold_83 . repeat_region 190765 190837 . ? . description=trf scaffold_83 . repeat_region 191155 191673 . - . description=Sola3-1_PS scaffold_83 . repeat_region 197567 197639 . ? . description=trf scaffold_83 . repeat_region 197801 197808 . ? . description=dust scaffold_83 ensembl protein_coding_gene 192409 193464 . - . ID=Physo109276;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_830002;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 192409 193464 . - . ID=Physo109276;Parent=Physo109276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 192409 193464 . - 0 ID=Physo109276;Parent=Physo109276;rank=1 scaffold_83 . exon 192409 193464 . - . ID=Physo109276.1;Parent=Physo109276;constitutive=1;rank=1 scaffold_83 . exon 189999 190149 . - . ID=Physo140229.6;Parent=Physo140229;constitutive=1;ensembl_phase=2;rank=6 scaffold_83 . exon 190219 190571 . - . ID=Physo140229.5;Parent=Physo140229;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_83 . exon 190641 190849 . - . ID=Physo140229.4;Parent=Physo140229;constitutive=1;ensembl_phase=1;rank=4 scaffold_83 . exon 190984 191122 . - . ID=Physo140229.3;Parent=Physo140229;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_83 . exon 191228 191271 . - . ID=Physo140229.2;Parent=Physo140229;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 . exon 191377 191440 . - . ID=Physo140229.1;Parent=Physo140229;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_83 ensembl protein_coding_gene 193612 196400 . - . ID=Physo140231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830038;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 193612 196400 . - . ID=Physo140231;Parent=Physo140231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 193612 194457 . - 0 ID=Physo140231;Parent=Physo140231;rank=5 scaffold_83 . exon 193612 194457 . - . ID=Physo140231.5;Parent=Physo140231;constitutive=1;rank=5 scaffold_83 . CDS 194563 195038 . - 0 ID=Physo140231;Parent=Physo140231;rank=4 scaffold_83 . exon 194563 195038 . - . ID=Physo140231.4;Parent=Physo140231;constitutive=1;ensembl_phase=1;rank=4 scaffold_83 . CDS 195289 195588 . - 0 ID=Physo140231;Parent=Physo140231;rank=3 scaffold_83 . exon 195289 195588 . - . ID=Physo140231.3;Parent=Physo140231;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 195660 196107 . - 0 ID=Physo140231;Parent=Physo140231;rank=2 scaffold_83 . exon 195660 196107 . - . ID=Physo140231.2;Parent=Physo140231;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_83 . CDS 196203 196400 . - 0 ID=Physo140231;Parent=Physo140231;rank=1 scaffold_83 . exon 196203 196400 . - . ID=Physo140231.1;Parent=Physo140231;constitutive=1;rank=1 scaffold_83 . biological_region 199796 199797 0.999 - . logic_name=eponine scaffold_83 . biological_region 199844 199847 0.999 - . logic_name=eponine scaffold_83 . repeat_region 215283 215325 . ? . description=trf scaffold_83 . repeat_region 215293 215329 . ? . description=trf scaffold_83 . repeat_region 216776 217014 . ? . description=trf scaffold_83 ensembl protein_coding_gene 211592 213330 . + . ID=Physo140232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830039;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 211592 213330 . + . ID=Physo140232;Parent=Physo140232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 211592 211954 . + 0 ID=Physo140232;Parent=Physo140232;rank=1 scaffold_83 . exon 211592 211954 . + . ID=Physo140232.1;Parent=Physo140232;constitutive=1;rank=1 scaffold_83 . CDS 212012 212291 . + 0 ID=Physo140232;Parent=Physo140232;rank=2 scaffold_83 . exon 212012 212291 . + . ID=Physo140232.2;Parent=Physo140232;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_83 . CDS 212340 212505 . + 0 ID=Physo140232;Parent=Physo140232;rank=3 scaffold_83 . exon 212340 212505 . + . ID=Physo140232.3;Parent=Physo140232;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_83 . CDS 212588 212826 . + 0 ID=Physo140232;Parent=Physo140232;rank=4 scaffold_83 . exon 212588 212826 . + . ID=Physo140232.4;Parent=Physo140232;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_83 . CDS 212960 213330 . + 0 ID=Physo140232;Parent=Physo140232;rank=5 scaffold_83 . exon 212960 213330 . + . ID=Physo140232.5;Parent=Physo140232;constitutive=1;ensembl_phase=1;rank=5 scaffold_83 ensembl protein_coding_gene 215215 217471 . + . ID=Physo140233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830040;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 215215 217471 . + . ID=Physo140233;Parent=Physo140233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 215215 215455 . + 0 ID=Physo140233;Parent=Physo140233;rank=1 scaffold_83 . exon 215215 215455 . + . ID=Physo140233.1;Parent=Physo140233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 . CDS 215503 215910 . + 0 ID=Physo140233;Parent=Physo140233;rank=2 scaffold_83 . exon 215503 215910 . + . ID=Physo140233.2;Parent=Physo140233;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_83 . CDS 215968 216082 . + 0 ID=Physo140233;Parent=Physo140233;rank=3 scaffold_83 . exon 215968 216082 . + . ID=Physo140233.3;Parent=Physo140233;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_83 . CDS 216190 216234 . + 0 ID=Physo140233;Parent=Physo140233;rank=4 scaffold_83 . exon 216190 216234 . + . ID=Physo140233.4;Parent=Physo140233;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_83 . CDS 216377 216379 . + 0 ID=Physo140233;Parent=Physo140233;rank=5 scaffold_83 . exon 216377 216379 . + . ID=Physo140233.5;Parent=Physo140233;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_83 . CDS 216464 216472 . + 0 ID=Physo140233;Parent=Physo140233;rank=6 scaffold_83 . exon 216464 216472 . + . ID=Physo140233.6;Parent=Physo140233;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_83 . CDS 216564 216797 . + 0 ID=Physo140233;Parent=Physo140233;rank=7 scaffold_83 . exon 216564 216797 . + . ID=Physo140233.7;Parent=Physo140233;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_83 . CDS 216888 216896 . + 0 ID=Physo140233;Parent=Physo140233;rank=8 scaffold_83 . exon 216888 216896 . + . ID=Physo140233.8;Parent=Physo140233;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_83 . CDS 216990 217124 . + 0 ID=Physo140233;Parent=Physo140233;rank=9 scaffold_83 . exon 216990 217124 . + . ID=Physo140233.9;Parent=Physo140233;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_83 . CDS 217210 217471 . + 0 ID=Physo140233;Parent=Physo140233;rank=10 scaffold_83 . exon 217210 217471 . + . ID=Physo140233.10;Parent=Physo140233;constitutive=1;ensembl_phase=2;rank=10 scaffold_83 . repeat_region 221381 221394 . ? . description=dust scaffold_83 ensembl protein_coding_gene 229160 230000 . - . ID=Physo109277;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_830003;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 229160 230000 . - . ID=Physo109277;Parent=Physo109277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 229160 230000 . - . ID=Physo109277.1;Parent=Physo109277;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_83 . CDS 229242 230000 . - 0 ID=Physo109277;Parent=Physo109277;rank=1 scaffold_83 ensembl protein_coding_gene 222162 223343 . + . ID=Physo140234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830041;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 222162 223343 . + . ID=Physo140234;Parent=Physo140234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 222162 223343 . + 0 ID=Physo140234;Parent=Physo140234;rank=1 scaffold_83 . exon 222162 223343 . + . ID=Physo140234.1;Parent=Physo140234;constitutive=1;rank=1 scaffold_83 . biological_region 229336 229337 0.999 - . logic_name=eponine scaffold_83 . biological_region 229865 229868 0.999 + . logic_name=eponine scaffold_83 . repeat_region 229953 229977 . ? . description=trf scaffold_83 . biological_region 231031 231037 0.999 + . logic_name=eponine scaffold_83 . biological_region 231066 231070 0.999 - . logic_name=eponine scaffold_83 . biological_region 231136 231141 0.999 - . logic_name=eponine scaffold_83 . biological_region 232419 232421 0.999 - . logic_name=eponine scaffold_83 . biological_region 238192 238196 0.999 - . logic_name=eponine scaffold_83 . biological_region 238247 238248 0.999 + . logic_name=eponine scaffold_83 . biological_region 238887 238891 0.999 - . logic_name=eponine scaffold_83 . biological_region 238961 238967 0.999 + . logic_name=eponine scaffold_83 . biological_region 238998 239002 0.999 - . logic_name=eponine scaffold_83 . biological_region 239054 239059 0.999 + . logic_name=eponine scaffold_83 . biological_region 239096 239102 0.999 - . logic_name=eponine scaffold_83 . biological_region 239163 239167 0.999 - . logic_name=eponine scaffold_83 ensembl protein_coding_gene 232158 232967 . - . ID=Physo140236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830043;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 232158 232967 . - . ID=Physo140236;Parent=Physo140236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 232158 232967 . - 0 ID=Physo140236;Parent=Physo140236;rank=1 scaffold_83 . exon 232158 232967 . - . ID=Physo140236.1;Parent=Physo140236;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 233206 239448 . - . ID=Physo140237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830044;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 233206 239448 . - . ID=Physo140237;Parent=Physo140237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 233206 239448 . - 0 ID=Physo140237;Parent=Physo140237;rank=1 scaffold_83 . exon 233206 239448 . - . ID=Physo140237.1;Parent=Physo140237;constitutive=1;rank=1 scaffold_83 . repeat_region 239836 239894 . ? . description=dust scaffold_83 . repeat_region 243517 243542 . ? . description=dust scaffold_83 ensembl protein_coding_gene 239576 241218 . + . ID=Physo140238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830045;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 239576 241218 . + . ID=Physo140238;Parent=Physo140238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 239576 240893 . + 0 ID=Physo140238;Parent=Physo140238;rank=1 scaffold_83 . exon 239576 240893 . + . ID=Physo140238.1;Parent=Physo140238;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 . CDS 241022 241122 . + 0 ID=Physo140238;Parent=Physo140238;rank=2 scaffold_83 . exon 241022 241218 . + . ID=Physo140238.2;Parent=Physo140238;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_83 ensembl protein_coding_gene 242160 243370 . - . ID=Physo140239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830046;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 242160 243370 . - . ID=Physo140239;Parent=Physo140239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 242160 242579 . - 0 ID=Physo140239;Parent=Physo140239;rank=2 scaffold_83 . exon 242160 242579 . - . ID=Physo140239.2;Parent=Physo140239;constitutive=1;rank=2 scaffold_83 . CDS 242603 243370 . - 0 ID=Physo140239;Parent=Physo140239;rank=1 scaffold_83 . exon 242603 243370 . - . ID=Physo140239.1;Parent=Physo140239;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 243948 245096 . + . ID=Physo140240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830047;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 243948 245096 . + . ID=Physo140240;Parent=Physo140240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 243948 243985 . + 0 ID=Physo140240;Parent=Physo140240;rank=1 scaffold_83 . exon 243948 243985 . + . ID=Physo140240.1;Parent=Physo140240;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 244186 244347 . + 0 ID=Physo140240;Parent=Physo140240;rank=2 scaffold_83 . exon 244186 244347 . + . ID=Physo140240.2;Parent=Physo140240;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_83 . CDS 244382 244496 . + 0 ID=Physo140240;Parent=Physo140240;rank=3 scaffold_83 . exon 244382 244496 . + . ID=Physo140240.3;Parent=Physo140240;constitutive=1;ensembl_phase=2;rank=3 scaffold_83 . CDS 244555 244656 . + 0 ID=Physo140240;Parent=Physo140240;rank=4 scaffold_83 . exon 244555 244656 . + . ID=Physo140240.4;Parent=Physo140240;constitutive=1;rank=4 scaffold_83 . CDS 244683 244805 . + 0 ID=Physo140240;Parent=Physo140240;rank=5 scaffold_83 . exon 244683 244805 . + . ID=Physo140240.5;Parent=Physo140240;constitutive=1;rank=5 scaffold_83 . CDS 244938 245096 . + 0 ID=Physo140240;Parent=Physo140240;rank=6 scaffold_83 . exon 244938 245096 . + . ID=Physo140240.6;Parent=Physo140240;constitutive=1;rank=6 scaffold_83 . repeat_region 249714 249759 . ? . description=trf scaffold_83 . biological_region 250046 250049 0.999 + . logic_name=eponine scaffold_83 . biological_region 250089 250095 0.999 - . logic_name=eponine scaffold_83 . biological_region 250280 250283 0.999 + . logic_name=eponine scaffold_83 . biological_region 250337 250340 0.999 - . logic_name=eponine scaffold_83 . repeat_region 250767 250823 . ? . description=trf scaffold_83 . repeat_region 250817 250875 . ? . description=trf scaffold_83 . repeat_region 250829 250877 . ? . description=trf scaffold_83 ensembl protein_coding_gene 249898 252339 . + . ID=Physo140241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830048;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 249898 252339 . + . ID=Physo140241;Parent=Physo140241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 249898 250994 . + 0 ID=Physo140241;Parent=Physo140241;rank=1 scaffold_83 . exon 249898 250994 . + . ID=Physo140241.1;Parent=Physo140241;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 252330 252339 . + 0 ID=Physo140241;Parent=Physo140241;rank=2 scaffold_83 . exon 252330 252339 . + . ID=Physo140241.2;Parent=Physo140241;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 . repeat_region 255349 260377 . ? . description=dust scaffold_83 . repeat_region 261060 261067 . ? . description=dust scaffold_83 . repeat_region 263212 263261 . ? . description=dust scaffold_83 . repeat_region 264093 264691 . ? . description=dust scaffold_83 ensembl protein_coding_gene 264033 264984 . + . ID=Physo140242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830049;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 264033 264984 . + . ID=Physo140242;Parent=Physo140242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 264033 264059 . + 0 ID=Physo140242;Parent=Physo140242;rank=1 scaffold_83 . exon 264033 264059 . + . ID=Physo140242.1;Parent=Physo140242;constitutive=1;rank=1 scaffold_83 . CDS 264694 264984 . + 0 ID=Physo140242;Parent=Physo140242;rank=2 scaffold_83 . exon 264694 264984 . + . ID=Physo140242.2;Parent=Physo140242;constitutive=1;rank=2 scaffold_83 . repeat_region 269690 269748 . ? . description=trf scaffold_83 . repeat_region 269690 269757 . + . description=(TTCGGG)n scaffold_83 . repeat_region 269690 269758 . ? . description=trf scaffold_83 . biological_region 270562 270568 0.999 + . logic_name=eponine scaffold_83 . biological_region 270617 270622 0.999 + . logic_name=eponine scaffold_83 . biological_region 271987 271987 0.999 - . logic_name=eponine scaffold_83 . biological_region 274713 274714 0.999 - . logic_name=eponine scaffold_83 . biological_region 275462 275471 0.999 + . logic_name=eponine scaffold_83 . biological_region 275488 275495 0.999 + . logic_name=eponine scaffold_83 . biological_region 275505 275507 0.999 - . logic_name=eponine scaffold_83 . biological_region 275521 275528 0.999 + . logic_name=eponine scaffold_83 . biological_region 275534 275542 0.999 - . logic_name=eponine scaffold_83 . biological_region 275563 275563 0.999 - . logic_name=eponine scaffold_83 . biological_region 275615 275620 0.999 + . logic_name=eponine scaffold_83 . biological_region 275662 275670 0.999 + . logic_name=eponine scaffold_83 . biological_region 275695 275699 0.999 - . logic_name=eponine scaffold_83 . biological_region 275707 275711 0.999 - . logic_name=eponine scaffold_83 . biological_region 276564 276568 0.999 - . logic_name=eponine scaffold_83 . repeat_region 277250 277324 . + . description=(ATG)n scaffold_83 . repeat_region 277257 277285 . ? . description=trf scaffold_83 ensembl protein_coding_gene 273274 274652 . - . ID=Physo140243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830050;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 273274 274652 . - . ID=Physo140243;Parent=Physo140243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 273274 274179 . - 0 ID=Physo140243;Parent=Physo140243;rank=4 scaffold_83 . exon 273274 274179 . - . ID=Physo140243.4;Parent=Physo140243;constitutive=1;rank=4 scaffold_83 . CDS 274253 274309 . - 0 ID=Physo140243;Parent=Physo140243;rank=3 scaffold_83 . exon 274253 274309 . - . ID=Physo140243.3;Parent=Physo140243;constitutive=1;rank=3 scaffold_83 . CDS 274386 274435 . - 0 ID=Physo140243;Parent=Physo140243;rank=2 scaffold_83 . exon 274386 274435 . - . ID=Physo140243.2;Parent=Physo140243;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 . CDS 274508 274652 . - 0 ID=Physo140243;Parent=Physo140243;rank=1 scaffold_83 . exon 274508 274652 . - . ID=Physo140243.1;Parent=Physo140243;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 ensembl protein_coding_gene 275397 278437 . + . ID=Physo140244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830051;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 275397 278437 . + . ID=Physo140244;Parent=Physo140244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 275397 276685 . + 0 ID=Physo140244;Parent=Physo140244;rank=1 scaffold_83 . exon 275397 276685 . + . ID=Physo140244.1;Parent=Physo140244;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 276989 278375 . + 0 ID=Physo140244;Parent=Physo140244;rank=2 scaffold_83 . exon 276989 278375 . + . ID=Physo140244.2;Parent=Physo140244;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 . CDS 278399 278437 . + 0 ID=Physo140244;Parent=Physo140244;rank=3 scaffold_83 . exon 278399 278437 . + . ID=Physo140244.3;Parent=Physo140244;constitutive=1;rank=3 scaffold_83 ensembl protein_coding_gene 278671 280032 . - . ID=Physo140245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830052;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 278671 280032 . - . ID=Physo140245;Parent=Physo140245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 278671 279573 . - 0 ID=Physo140245;Parent=Physo140245;rank=4 scaffold_83 . exon 278671 279573 . - . ID=Physo140245.4;Parent=Physo140245;constitutive=1;rank=4 scaffold_83 . CDS 279635 279685 . - 0 ID=Physo140245;Parent=Physo140245;rank=3 scaffold_83 . CDS 279762 279811 . - 0 ID=Physo140245;Parent=Physo140245;rank=2 scaffold_83 . CDS 279894 280032 . - 0 ID=Physo140245;Parent=Physo140245;rank=1 scaffold_83 . repeat_region 283524 283532 . ? . description=dust scaffold_83 . exon 279635 279685 . - . ID=Physo140245.3;Parent=Physo140245;constitutive=1;rank=3 scaffold_83 . exon 279762 279811 . - . ID=Physo140245.2;Parent=Physo140245;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 . exon 279894 280032 . - . ID=Physo140245.1;Parent=Physo140245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 ensembl protein_coding_gene 280389 281654 . - . ID=Physo140246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830053;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 280389 281654 . - . ID=Physo140246;Parent=Physo140246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 280389 281654 . - 0 ID=Physo140246;Parent=Physo140246;rank=1 scaffold_83 . exon 280389 281654 . - . ID=Physo140246.1;Parent=Physo140246;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 281943 282918 . - . ID=Physo140247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830054;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 281943 282918 . - . ID=Physo140247;Parent=Physo140247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 281943 282918 . - . ID=Physo140247.1;Parent=Physo140247;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_83 . CDS 282031 282918 . - 0 ID=Physo140247;Parent=Physo140247;rank=1 scaffold_83 ensembl protein_coding_gene 284898 285761 . + . ID=Physo140248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830055;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 284898 285761 . + . ID=Physo140248;Parent=Physo140248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 284898 285761 . + . ID=Physo140248.1;Parent=Physo140248;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_83 . CDS 285132 285602 . + 0 ID=Physo140248;Parent=Physo140248;rank=1 scaffold_83 ensembl protein_coding_gene 286051 286934 . - . ID=Physo140249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830056;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 286051 286934 . - . ID=Physo140249;Parent=Physo140249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 286051 286625 . - 0 ID=Physo140249;Parent=Physo140249;rank=2 scaffold_83 . exon 286051 286625 . - . ID=Physo140249.2;Parent=Physo140249;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 . CDS 286742 286934 . - 0 ID=Physo140249;Parent=Physo140249;rank=1 scaffold_83 . exon 286742 286934 . - . ID=Physo140249.1;Parent=Physo140249;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 ensembl protein_coding_gene 287893 288510 . - . ID=Physo140250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830057;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 287893 288510 . - . ID=Physo140250;Parent=Physo140250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 287893 288510 . - 0 ID=Physo140250;Parent=Physo140250;rank=1 scaffold_83 . exon 287893 288510 . - . ID=Physo140250.1;Parent=Physo140250;constitutive=1;rank=1 scaffold_83 . biological_region 289212 289214 0.999 - . logic_name=eponine scaffold_83 . biological_region 290002 290002 0.999 + . logic_name=eponine scaffold_83 . biological_region 294573 294578 0.999 + . logic_name=eponine scaffold_83 . biological_region 294619 294625 0.999 - . logic_name=eponine scaffold_83 . biological_region 294673 294680 0.999 + . logic_name=eponine scaffold_83 . repeat_region 294726 294756 . ? . description=trf scaffold_83 . biological_region 294962 294966 0.999 - . logic_name=eponine scaffold_83 . biological_region 295034 295036 0.999 - . logic_name=eponine scaffold_83 . repeat_region 295100 295130 . ? . description=trf scaffold_83 . repeat_region 295249 295268 . ? . description=trf scaffold_83 . biological_region 295471 295473 0.999 - . logic_name=eponine scaffold_83 . biological_region 295504 295506 0.999 + . logic_name=eponine scaffold_83 . biological_region 295527 295532 0.999 + . logic_name=eponine scaffold_83 . biological_region 295579 295580 0.999 - . logic_name=eponine scaffold_83 . biological_region 296172 296176 0.999 + . logic_name=eponine scaffold_83 . biological_region 296313 296317 0.999 + . logic_name=eponine scaffold_83 . biological_region 296411 296412 0.999 - . logic_name=eponine scaffold_83 . biological_region 296573 296574 0.999 + . logic_name=eponine scaffold_83 . biological_region 296591 296592 0.999 - . logic_name=eponine scaffold_83 ensembl protein_coding_gene 289555 291937 . - . ID=Physo140251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830058;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 289555 291937 . - . ID=Physo140251;Parent=Physo140251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 289555 290095 . - . ID=Physo140251.4;Parent=Physo140251;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_83 . CDS 289660 290095 . - 0 ID=Physo140251;Parent=Physo140251;rank=4 scaffold_83 . CDS 290186 291161 . - 0 ID=Physo140251;Parent=Physo140251;rank=3 scaffold_83 . exon 290186 291161 . - . ID=Physo140251.3;Parent=Physo140251;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_83 . CDS 291266 291378 . - 0 ID=Physo140251;Parent=Physo140251;rank=2 scaffold_83 . exon 291266 291378 . - . ID=Physo140251.2;Parent=Physo140251;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_83 . CDS 291456 291937 . - 0 ID=Physo140251;Parent=Physo140251;rank=1 scaffold_83 . exon 291456 291937 . - . ID=Physo140251.1;Parent=Physo140251;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 ensembl protein_coding_gene 294609 295466 . - . ID=Physo140252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830059;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 294609 295466 . - . ID=Physo140252;Parent=Physo140252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 294609 295466 . - 0 ID=Physo140252;Parent=Physo140252;rank=1 scaffold_83 . exon 294609 295466 . - . ID=Physo140252.1;Parent=Physo140252;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 296777 299744 . - . ID=Physo140253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830060;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 296777 299744 . - . ID=Physo140253;Parent=Physo140253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 296777 297352 . - 0 ID=Physo140253;Parent=Physo140253;rank=4 scaffold_83 . exon 296777 297352 . - . ID=Physo140253.4;Parent=Physo140253;constitutive=1;rank=4 scaffold_83 . CDS 297385 297786 . - 0 ID=Physo140253;Parent=Physo140253;rank=3 scaffold_83 . exon 297385 297786 . - . ID=Physo140253.3;Parent=Physo140253;constitutive=1;rank=3 scaffold_83 . CDS 297846 297878 . - 0 ID=Physo140253;Parent=Physo140253;rank=2 scaffold_83 . exon 297846 297878 . - . ID=Physo140253.2;Parent=Physo140253;constitutive=1;rank=2 scaffold_83 . CDS 298119 299744 . - 0 ID=Physo140253;Parent=Physo140253;rank=1 scaffold_83 . exon 298119 299744 . - . ID=Physo140253.1;Parent=Physo140253;constitutive=1;rank=1 scaffold_83 . repeat_region 307880 307910 . ? . description=dust scaffold_83 . repeat_region 308401 308427 . ? . description=dust scaffold_83 ensembl protein_coding_gene 300320 303344 . + . ID=Physo140254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830061;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 300320 303344 . + . ID=Physo140254;Parent=Physo140254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 300320 300361 . + 0 ID=Physo140254;Parent=Physo140254;rank=1 scaffold_83 . exon 300320 300361 . + . ID=Physo140254.1;Parent=Physo140254;constitutive=1;rank=1 scaffold_83 . CDS 300407 301069 . + 0 ID=Physo140254;Parent=Physo140254;rank=2 scaffold_83 . exon 300407 301069 . + . ID=Physo140254.2;Parent=Physo140254;constitutive=1;rank=2 scaffold_83 . CDS 301131 301247 . + 0 ID=Physo140254;Parent=Physo140254;rank=3 scaffold_83 . exon 301131 301247 . + . ID=Physo140254.3;Parent=Physo140254;constitutive=1;rank=3 scaffold_83 . CDS 301448 302379 . + 0 ID=Physo140254;Parent=Physo140254;rank=4 scaffold_83 . exon 301448 302379 . + . ID=Physo140254.4;Parent=Physo140254;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_83 . CDS 302449 303187 . + 0 ID=Physo140254;Parent=Physo140254;rank=5 scaffold_83 . exon 302449 303187 . + . ID=Physo140254.5;Parent=Physo140254;constitutive=1;ensembl_phase=2;rank=5 scaffold_83 . CDS 303216 303344 . + 0 ID=Physo140254;Parent=Physo140254;rank=6 scaffold_83 . exon 303216 303344 . + . ID=Physo140254.6;Parent=Physo140254;constitutive=1;rank=6 scaffold_83 ensembl protein_coding_gene 305707 306790 . - . ID=Physo140255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830062;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 305707 306790 . - . ID=Physo140255;Parent=Physo140255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 305707 306193 . - 0 ID=Physo140255;Parent=Physo140255;rank=2 scaffold_83 . exon 305707 306193 . - . ID=Physo140255.2;Parent=Physo140255;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 . CDS 306258 306790 . - 0 ID=Physo140255;Parent=Physo140255;rank=1 scaffold_83 . exon 306258 306790 . - . ID=Physo140255.1;Parent=Physo140255;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 ensembl protein_coding_gene 307790 308544 . + . ID=Physo140256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830063;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 307790 308544 . + . ID=Physo140256;Parent=Physo140256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 307790 308544 . + . ID=Physo140256.1;Parent=Physo140256;constitutive=1;ensembl_phase=-1;rank=1 scaffold_83 . CDS 307849 308544 . + 0 ID=Physo140256;Parent=Physo140256;rank=1 scaffold_83 . repeat_region 310546 310851 . + . description=GypsyPi-1c_LTR scaffold_83 . repeat_region 310852 312092 . + . description=GypsyPi-1c_I-int scaffold_83 . repeat_region 312266 312315 . ? . description=trf scaffold_83 . repeat_region 312272 312322 . ? . description=trf scaffold_83 . repeat_region 312370 312991 . + . description=GypsyPi-1c_I-int scaffold_83 . repeat_region 312792 313126 . ? . description=trf scaffold_83 . repeat_region 312808 313127 . ? . description=trf scaffold_83 . repeat_region 312963 313147 . + . description=GypsyPi-1c_I-int scaffold_83 . biological_region 313373 313375 0.999 + . logic_name=eponine scaffold_83 . repeat_region 314000 314077 . + . description=GypsyPi-1c_I-int scaffold_83 . repeat_region 314651 314700 . ? . description=trf scaffold_83 . biological_region 315416 315416 0.999 + . logic_name=eponine scaffold_83 . repeat_region 315595 315900 . + . description=GypsyPi-1c_LTR scaffold_83 . biological_region 316417 316421 0.999 + . logic_name=eponine scaffold_83 . biological_region 316590 316590 0.999 + . logic_name=eponine scaffold_83 . biological_region 318622 318628 0.999 + . logic_name=eponine scaffold_83 . biological_region 318652 318654 0.999 - . logic_name=eponine scaffold_83 . biological_region 318689 318692 0.999 + . logic_name=eponine scaffold_83 . biological_region 318778 318781 0.999 - . logic_name=eponine scaffold_83 . biological_region 318835 318838 0.999 + . logic_name=eponine scaffold_83 ensembl protein_coding_gene 310939 311904 . + . ID=Physo140257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830064;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 310939 311904 . + . ID=Physo140257;Parent=Physo140257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 310939 311904 . + 0 ID=Physo140257;Parent=Physo140257;rank=1 scaffold_83 . exon 310939 311904 . + . ID=Physo140257.1;Parent=Physo140257;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 319411 321436 . - . ID=Physo140258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830065;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 319411 321436 . - . ID=Physo140258;Parent=Physo140258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 319411 319777 . - 0 ID=Physo140258;Parent=Physo140258;rank=6 scaffold_83 . exon 319411 319777 . - . ID=Physo140258.6;Parent=Physo140258;constitutive=1;ensembl_phase=2;rank=6 scaffold_83 . CDS 319801 319869 . - 0 ID=Physo140258;Parent=Physo140258;rank=5 scaffold_83 . exon 319801 319869 . - . ID=Physo140258.5;Parent=Physo140258;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_83 . CDS 319984 320117 . - 0 ID=Physo140258;Parent=Physo140258;rank=4 scaffold_83 . exon 319984 320117 . - . ID=Physo140258.4;Parent=Physo140258;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_83 . CDS 320211 320287 . - 0 ID=Physo140258;Parent=Physo140258;rank=3 scaffold_83 . exon 320211 320287 . - . ID=Physo140258.3;Parent=Physo140258;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . CDS 320489 321016 . - 0 ID=Physo140258;Parent=Physo140258;rank=2 scaffold_83 . exon 320489 321016 . - . ID=Physo140258.2;Parent=Physo140258;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_83 . CDS 321193 321436 . - 0 ID=Physo140258;Parent=Physo140258;rank=1 scaffold_83 . exon 321193 321436 . - . ID=Physo140258.1;Parent=Physo140258;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 ensembl protein_coding_gene 325725 326690 . - . ID=Physo140259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830066;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 325725 326690 . - . ID=Physo140259;Parent=Physo140259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 325725 326690 . - 0 ID=Physo140259;Parent=Physo140259;rank=1 scaffold_83 . exon 325725 326690 . - . ID=Physo140259.1;Parent=Physo140259;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 328797 329414 . + . ID=Physo140260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830067;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 328797 329414 . + . ID=Physo140260;Parent=Physo140260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 328797 329414 . + 0 ID=Physo140260;Parent=Physo140260;rank=1 scaffold_83 . exon 328797 329414 . + . ID=Physo140260.1;Parent=Physo140260;constitutive=1;rank=1 scaffold_83 . biological_region 329240 329242 0.999 - . logic_name=eponine scaffold_83 . biological_region 329261 329263 0.999 + . logic_name=eponine scaffold_83 . biological_region 331927 331929 0.999 + . logic_name=eponine scaffold_83 . biological_region 331998 332001 0.999 + . logic_name=eponine scaffold_83 . biological_region 332417 332421 0.999 - . logic_name=eponine scaffold_83 . biological_region 332473 332484 0.999 + . logic_name=eponine scaffold_83 . biological_region 332563 332565 0.999 + . logic_name=eponine scaffold_83 . biological_region 332571 332576 0.999 + . logic_name=eponine scaffold_83 . biological_region 332588 332593 0.999 - . logic_name=eponine scaffold_83 . biological_region 332642 332651 0.999 + . logic_name=eponine scaffold_83 . biological_region 333103 333106 0.999 - . logic_name=eponine scaffold_83 . biological_region 333515 333518 0.999 - . logic_name=eponine scaffold_83 . repeat_region 334042 334055 . ? . description=dust scaffold_83 . biological_region 336621 336625 0.999 + . logic_name=eponine scaffold_83 . repeat_region 337851 337890 . ? . description=trf scaffold_83 . biological_region 338761 338762 0.999 + . logic_name=eponine scaffold_83 . biological_region 338827 338832 0.999 + . logic_name=eponine scaffold_83 . biological_region 338856 338857 0.999 - . logic_name=eponine scaffold_83 ensembl protein_coding_gene 332421 333547 . + . ID=Physo109278;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_830004;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 332421 333547 . + . ID=Physo109278;Parent=Physo109278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 332421 333547 . + . ID=Physo109278.1;Parent=Physo109278;constitutive=1;ensembl_phase=-1;rank=1 scaffold_83 . CDS 332486 333547 . + 0 ID=Physo109278;Parent=Physo109278;rank=1 scaffold_83 ensembl protein_coding_gene 330249 331245 . + . ID=Physo140261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830068;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 330249 331245 . + . ID=Physo140261;Parent=Physo140261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 330249 330321 . + 0 ID=Physo140261;Parent=Physo140261;rank=1 scaffold_83 . exon 330249 330321 . + . ID=Physo140261.1;Parent=Physo140261;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 . CDS 330563 331245 . + 0 ID=Physo140261;Parent=Physo140261;rank=2 scaffold_83 . exon 330563 331245 . + . ID=Physo140261.2;Parent=Physo140261;constitutive=1;ensembl_phase=1;rank=2 scaffold_83 ensembl protein_coding_gene 331535 332394 . - . ID=Physo140262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830069;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 331535 332394 . - . ID=Physo140262;Parent=Physo140262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 331535 332274 . - . ID=Physo140262.2;Parent=Physo140262;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_83 . CDS 331694 332164 . - 0 ID=Physo140262;Parent=Physo140262;rank=1 scaffold_83 . exon 332354 332394 . - . ID=Physo140262.1;Parent=Physo140262;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_83 ensembl protein_coding_gene 334556 336588 . + . ID=Physo140264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830071;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 334556 336588 . + . ID=Physo140264;Parent=Physo140264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 334556 334830 . + 0 ID=Physo140264;Parent=Physo140264;rank=1 scaffold_83 . exon 334556 334830 . + . ID=Physo140264.1;Parent=Physo140264;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_83 . CDS 334904 335606 . + 0 ID=Physo140264;Parent=Physo140264;rank=2 scaffold_83 . exon 334904 335606 . + . ID=Physo140264.2;Parent=Physo140264;constitutive=1;ensembl_phase=2;rank=2 scaffold_83 . CDS 335683 335800 . + 0 ID=Physo140264;Parent=Physo140264;rank=3 scaffold_83 . exon 335683 335800 . + . ID=Physo140264.3;Parent=Physo140264;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_83 . CDS 335921 336086 . + 0 ID=Physo140264;Parent=Physo140264;rank=4 scaffold_83 . exon 335921 336086 . + . ID=Physo140264.4;Parent=Physo140264;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_83 . CDS 336134 336161 . + 0 ID=Physo140264;Parent=Physo140264;rank=5 scaffold_83 . exon 336134 336161 . + . ID=Physo140264.5;Parent=Physo140264;constitutive=1;ensembl_phase=2;rank=5 scaffold_83 . CDS 336226 336588 . + 0 ID=Physo140264;Parent=Physo140264;rank=6 scaffold_83 . exon 336226 336588 . + . ID=Physo140264.6;Parent=Physo140264;constitutive=1;rank=6 scaffold_83 ensembl protein_coding_gene 336730 337539 . - . ID=Physo140265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830072;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 336730 337539 . - . ID=Physo140265;Parent=Physo140265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 336730 337539 . - 0 ID=Physo140265;Parent=Physo140265;rank=1 scaffold_83 . exon 336730 337539 . - . ID=Physo140265.1;Parent=Physo140265;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 338735 340471 . + . ID=Physo140266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830073;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 338735 340471 . + . ID=Physo140266;Parent=Physo140266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 338735 340471 . + 0 ID=Physo140266;Parent=Physo140266;rank=1 scaffold_83 . exon 338735 340471 . + . ID=Physo140266.1;Parent=Physo140266;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 340834 341897 . + . ID=Physo140267;biotype=protein_coding;description=Calcium/calmodulin dependent protein kinase 3 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U7];external_name=estExt_fgenesh1_pg.C_830074;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 340834 341897 . + . ID=Physo140267;Parent=Physo140267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 340834 341505 . + 0 ID=Physo140267;Parent=Physo140267;rank=1 scaffold_83 . exon 340834 341505 . + . ID=Physo140267.1;Parent=Physo140267;constitutive=1;rank=1 scaffold_83 . CDS 341586 341897 . + 0 ID=Physo140267;Parent=Physo140267;rank=2 scaffold_83 . exon 341586 341897 . + . ID=Physo140267.2;Parent=Physo140267;constitutive=1;rank=2 scaffold_83 ensembl protein_coding_gene 346863 348194 . + . ID=Physo140268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830075;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 346863 348194 . + . ID=Physo140268;Parent=Physo140268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 346863 348194 . + 0 ID=Physo140268;Parent=Physo140268;rank=1 scaffold_83 . exon 346863 348194 . + . ID=Physo140268.1;Parent=Physo140268;constitutive=1;rank=1 scaffold_83 . repeat_region 351475 351495 . ? . description=trf scaffold_83 . repeat_region 354605 354763 . + . description=(CAGTC)n scaffold_83 . repeat_region 356496 356505 . ? . description=dust scaffold_83 . repeat_region 358368 358403 . ? . description=trf scaffold_83 ensembl protein_coding_gene 353431 354793 . + . ID=Physo140269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830076;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 353431 354793 . + . ID=Physo140269;Parent=Physo140269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 353431 353565 . + 0 ID=Physo140269;Parent=Physo140269;rank=1 scaffold_83 . exon 353431 353565 . + . ID=Physo140269.1;Parent=Physo140269;constitutive=1;rank=1 scaffold_83 . CDS 353677 354094 . + 0 ID=Physo140269;Parent=Physo140269;rank=2 scaffold_83 . exon 353677 354094 . + . ID=Physo140269.2;Parent=Physo140269;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_83 . CDS 354173 354344 . + 0 ID=Physo140269;Parent=Physo140269;rank=3 scaffold_83 . exon 354173 354344 . + . ID=Physo140269.3;Parent=Physo140269;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_83 . CDS 354376 354793 . + 0 ID=Physo140269;Parent=Physo140269;rank=4 scaffold_83 . exon 354376 354793 . + . ID=Physo140269.4;Parent=Physo140269;constitutive=1;ensembl_phase=2;rank=4 scaffold_83 ensembl protein_coding_gene 356943 358454 . + . ID=Physo140270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830077;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 356943 358454 . + . ID=Physo140270;Parent=Physo140270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 356943 356979 . + 0 ID=Physo140270;Parent=Physo140270;rank=1 scaffold_83 . exon 356943 356979 . + . ID=Physo140270.1;Parent=Physo140270;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_83 . CDS 357069 357143 . + 0 ID=Physo140270;Parent=Physo140270;rank=2 scaffold_83 . exon 357069 357143 . + . ID=Physo140270.2;Parent=Physo140270;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_83 . CDS 357208 358454 . + 0 ID=Physo140270;Parent=Physo140270;rank=3 scaffold_83 . exon 357208 358454 . + . ID=Physo140270.3;Parent=Physo140270;constitutive=1;ensembl_phase=1;rank=3 scaffold_83 . biological_region 359610 359613 0.999 + . logic_name=eponine scaffold_83 . biological_region 361007 361011 0.999 - . logic_name=eponine scaffold_83 . biological_region 365950 365953 0.999 + . logic_name=eponine scaffold_83 . biological_region 366454 366456 0.999 + . logic_name=eponine scaffold_83 . biological_region 366562 366566 0.999 - . logic_name=eponine scaffold_83 . biological_region 366655 366665 0.999 + . logic_name=eponine scaffold_83 . biological_region 366690 366697 0.999 + . logic_name=eponine scaffold_83 . biological_region 366704 366704 0.999 + . logic_name=eponine scaffold_83 ensembl protein_coding_gene 362426 362848 . - . ID=Physo140271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830078;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 362426 362848 . - . ID=Physo140271;Parent=Physo140271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 362426 362848 . - 0 ID=Physo140271;Parent=Physo140271;rank=1 scaffold_83 . exon 362426 362848 . - . ID=Physo140271.1;Parent=Physo140271;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 363296 366217 . + . ID=Physo140272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830079;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 363296 366217 . + . ID=Physo140272;Parent=Physo140272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . CDS 363296 366217 . + 0 ID=Physo140272;Parent=Physo140272;rank=1 scaffold_83 . exon 363296 366217 . + . ID=Physo140272.1;Parent=Physo140272;constitutive=1;rank=1 scaffold_83 ensembl protein_coding_gene 366282 367008 . + . ID=Physo140273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_830080;logic_name=jgi_physo1_1 scaffold_83 ensembl transcript 366282 367008 . + . ID=Physo140273;Parent=Physo140273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_83 . exon 366282 367008 . + . ID=Physo140273.1;Parent=Physo140273;constitutive=1;ensembl_phase=-1;rank=1 scaffold_83 . CDS 366430 367008 . + 0 ID=Physo140273;Parent=Physo140273;rank=1 ##gff-version 3 ##sequence-region scaffold_66 1 372453 scaffold_66 . repeat_region 3702 3751 . ? . description=dust scaffold_66 . repeat_region 5611 5639 . ? . description=trf scaffold_66 . repeat_region 6086 6093 . ? . description=dust scaffold_66 . repeat_region 6693 6734 . ? . description=trf scaffold_66 . biological_region 8313 8317 0.999 + . logic_name=eponine scaffold_66 . biological_region 8413 8415 0.999 + . logic_name=eponine scaffold_66 . repeat_region 9162 9211 . ? . description=dust scaffold_66 ensembl protein_coding_gene 2093 3116 . - . ID=Physo138682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660001;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 2093 3116 . - . ID=Physo138682;Parent=Physo138682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 2093 2979 . - . ID=Physo138682.2;Parent=Physo138682;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_66 . CDS 2132 2979 . - 0 ID=Physo138682;Parent=Physo138682;rank=2 scaffold_66 . CDS 3056 3116 . - 0 ID=Physo138682;Parent=Physo138682;rank=1 scaffold_66 . exon 3056 3116 . - . ID=Physo138682.1;Parent=Physo138682;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 6682 8878 . - . ID=Physo138683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660002;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 6682 8878 . - . ID=Physo138683;Parent=Physo138683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 6682 6788 . - 0 ID=Physo138683;Parent=Physo138683;rank=7 scaffold_66 . exon 6682 6788 . - . ID=Physo138683.7;Parent=Physo138683;constitutive=1;ensembl_phase=1;rank=7 scaffold_66 . CDS 7016 7030 . - 0 ID=Physo138683;Parent=Physo138683;rank=6 scaffold_66 . exon 7016 7030 . - . ID=Physo138683.6;Parent=Physo138683;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_66 . CDS 7071 7221 . - 0 ID=Physo138683;Parent=Physo138683;rank=5 scaffold_66 . exon 7071 7221 . - . ID=Physo138683.5;Parent=Physo138683;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_66 . CDS 7300 7541 . - 0 ID=Physo138683;Parent=Physo138683;rank=4 scaffold_66 . exon 7300 7541 . - . ID=Physo138683.4;Parent=Physo138683;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 7677 7696 . - 0 ID=Physo138683;Parent=Physo138683;rank=3 scaffold_66 . exon 7677 7696 . - . ID=Physo138683.3;Parent=Physo138683;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 8214 8451 . - 0 ID=Physo138683;Parent=Physo138683;rank=2 scaffold_66 . exon 8214 8451 . - . ID=Physo138683.2;Parent=Physo138683;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_66 . CDS 8611 8878 . - 0 ID=Physo138683;Parent=Physo138683;rank=1 scaffold_66 . exon 8611 8878 . - . ID=Physo138683.1;Parent=Physo138683;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 10108 11783 . + . ID=Physo138684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660003;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 10108 11783 . + . ID=Physo138684;Parent=Physo138684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 10108 10793 . + 0 ID=Physo138684;Parent=Physo138684;rank=1 scaffold_66 . exon 10108 10793 . + . ID=Physo138684.1;Parent=Physo138684;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 10827 11286 . + 0 ID=Physo138684;Parent=Physo138684;rank=2 scaffold_66 . exon 10827 11286 . + . ID=Physo138684.2;Parent=Physo138684;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 11415 11783 . + 0 ID=Physo138684;Parent=Physo138684;rank=3 scaffold_66 . exon 11415 11783 . + . ID=Physo138684.3;Parent=Physo138684;constitutive=1;rank=3 scaffold_66 ensembl protein_coding_gene 15053 15931 . + . ID=Physo138685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660004;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 15053 15931 . + . ID=Physo138685;Parent=Physo138685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 15053 15612 . + 0 ID=Physo138685;Parent=Physo138685;rank=1 scaffold_66 . exon 15053 15612 . + . ID=Physo138685.1;Parent=Physo138685;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 15682 15931 . + 0 ID=Physo138685;Parent=Physo138685;rank=2 scaffold_66 . exon 15682 15931 . + . ID=Physo138685.2;Parent=Physo138685;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 ensembl protein_coding_gene 16077 18848 . - . ID=Physo138686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660005;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 16077 18848 . - . ID=Physo138686;Parent=Physo138686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 16077 17094 . - 0 ID=Physo138686;Parent=Physo138686;rank=4 scaffold_66 . exon 16077 17094 . - . ID=Physo138686.4;Parent=Physo138686;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 17644 17644 . - 0 ID=Physo138686;Parent=Physo138686;rank=3 scaffold_66 . exon 17644 17644 . - . ID=Physo138686.3;Parent=Physo138686;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_66 . CDS 18013 18713 . - 0 ID=Physo138686;Parent=Physo138686;rank=2 scaffold_66 . exon 18013 18713 . - . ID=Physo138686.2;Parent=Physo138686;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 18763 18848 . - 0 ID=Physo138686;Parent=Physo138686;rank=1 scaffold_66 . exon 18763 18848 . - . ID=Physo138686.1;Parent=Physo138686;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 19353 19791 . - . ID=Physo138687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660006;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 19353 19791 . - . ID=Physo138687;Parent=Physo138687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 19353 19665 . - 0 ID=Physo138687;Parent=Physo138687;rank=2 scaffold_66 . exon 19353 19665 . - . ID=Physo138687.2;Parent=Physo138687;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 19730 19791 . - 0 ID=Physo138687;Parent=Physo138687;rank=1 scaffold_66 . biological_region 19740 19742 0.999 + . logic_name=eponine scaffold_66 . biological_region 20696 20699 0.999 - . logic_name=eponine scaffold_66 . biological_region 26605 26610 0.999 + . logic_name=eponine scaffold_66 . exon 19730 19791 . - . ID=Physo138687.1;Parent=Physo138687;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 20507 27223 . + . ID=Physo138688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660007;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 20507 27223 . + . ID=Physo138688;Parent=Physo138688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 20507 22595 . + 0 ID=Physo138688;Parent=Physo138688;rank=1 scaffold_66 . exon 20507 22595 . + . ID=Physo138688.1;Parent=Physo138688;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 23116 24569 . + 0 ID=Physo138688;Parent=Physo138688;rank=2 scaffold_66 . exon 23116 24569 . + . ID=Physo138688.2;Parent=Physo138688;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 24657 25748 . + 0 ID=Physo138688;Parent=Physo138688;rank=3 scaffold_66 . exon 24657 25748 . + . ID=Physo138688.3;Parent=Physo138688;constitutive=1;rank=3 scaffold_66 . CDS 25797 25943 . + 0 ID=Physo138688;Parent=Physo138688;rank=4 scaffold_66 . exon 25797 25943 . + . ID=Physo138688.4;Parent=Physo138688;constitutive=1;rank=4 scaffold_66 . CDS 25986 26087 . + 0 ID=Physo138688;Parent=Physo138688;rank=5 scaffold_66 . exon 25986 26087 . + . ID=Physo138688.5;Parent=Physo138688;constitutive=1;rank=5 scaffold_66 . CDS 26207 27223 . + 0 ID=Physo138688;Parent=Physo138688;rank=6 scaffold_66 . exon 26207 27223 . + . ID=Physo138688.6;Parent=Physo138688;constitutive=1;rank=6 scaffold_66 ensembl protein_coding_gene 27491 28467 . - . ID=Physo138689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660008;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 27491 28467 . - . ID=Physo138689;Parent=Physo138689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 27491 27512 . - 0 ID=Physo138689;Parent=Physo138689;rank=3 scaffold_66 . exon 27491 27512 . - . ID=Physo138689.3;Parent=Physo138689;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 27551 27891 . - 0 ID=Physo138689;Parent=Physo138689;rank=2 scaffold_66 . exon 27551 27891 . - . ID=Physo138689.2;Parent=Physo138689;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 28045 28467 . - 0 ID=Physo138689;Parent=Physo138689;rank=1 scaffold_66 . exon 28045 28467 . - . ID=Physo138689.1;Parent=Physo138689;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 28984 30318 . + . ID=Physo138690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660009;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 28984 30318 . + . ID=Physo138690;Parent=Physo138690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 28984 30318 . + 0 ID=Physo138690;Parent=Physo138690;rank=1 scaffold_66 . exon 28984 30318 . + . ID=Physo138690.1;Parent=Physo138690;constitutive=1;rank=1 scaffold_66 . repeat_region 38694 38810 . ? . description=trf scaffold_66 . repeat_region 38694 38819 . ? . description=trf scaffold_66 . repeat_region 38768 38919 . ? . description=trf scaffold_66 . repeat_region 38789 38849 . ? . description=trf scaffold_66 . repeat_region 38819 38860 . ? . description=trf scaffold_66 . repeat_region 38882 38926 . ? . description=trf scaffold_66 . biological_region 39608 39612 0.999 - . logic_name=eponine scaffold_66 . biological_region 39647 39650 0.999 + . logic_name=eponine scaffold_66 . biological_region 39667 39669 0.999 + . logic_name=eponine scaffold_66 . biological_region 39687 39690 0.999 + . logic_name=eponine scaffold_66 . biological_region 39689 39694 0.999 - . logic_name=eponine scaffold_66 . repeat_region 42624 42673 . ? . description=dust scaffold_66 . repeat_region 43584 43592 . ? . description=dust scaffold_66 . biological_region 48951 48952 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 45200 48448 . + . ID=Physo119646;biotype=protein_coding;external_name=estExt_Genewise1.C_660055;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 45200 48448 . + . ID=Physo119646;Parent=Physo119646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 45200 46046 . + . ID=Physo119646.1;Parent=Physo119646;constitutive=1;ensembl_phase=-1;rank=1 scaffold_66 . CDS 45645 46046 . + 0 ID=Physo119646;Parent=Physo119646;rank=1 scaffold_66 . CDS 47015 47677 . + 0 ID=Physo119646;Parent=Physo119646;rank=2 scaffold_66 . exon 47015 47677 . + . ID=Physo119646.2;Parent=Physo119646;constitutive=1;rank=2 scaffold_66 . CDS 47779 48183 . + 0 ID=Physo119646;Parent=Physo119646;rank=3 scaffold_66 . exon 47779 48448 . + . ID=Physo119646.3;Parent=Physo119646;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_66 . repeat_region 50786 50829 . ? . description=trf scaffold_66 . repeat_region 50795 50839 . ? . description=trf scaffold_66 . repeat_region 52407 52513 . ? . description=trf scaffold_66 . repeat_region 52894 52973 . ? . description=trf scaffold_66 ensembl protein_coding_gene 49453 50273 . - . ID=Physo138691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660010;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 49453 50273 . - . ID=Physo138691;Parent=Physo138691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 49453 49649 . - 0 ID=Physo138691;Parent=Physo138691;rank=2 scaffold_66 . exon 49453 49649 . - . ID=Physo138691.2;Parent=Physo138691;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 49850 50273 . - 0 ID=Physo138691;Parent=Physo138691;rank=1 scaffold_66 . exon 49850 50273 . - . ID=Physo138691.1;Parent=Physo138691;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 55295 57114 . + . ID=Physo138692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660011;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 55295 57114 . + . ID=Physo138692;Parent=Physo138692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 55295 57114 . + . ID=Physo138692.1;Parent=Physo138692;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_66 . CDS 55345 57018 . + 0 ID=Physo138692;Parent=Physo138692;rank=1 scaffold_66 ensembl protein_coding_gene 57715 59736 . + . ID=Physo138693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660012;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 57715 59736 . + . ID=Physo138693;Parent=Physo138693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 57715 59736 . + 0 ID=Physo138693;Parent=Physo138693;rank=1 scaffold_66 . exon 57715 59736 . + . ID=Physo138693.1;Parent=Physo138693;constitutive=1;rank=1 scaffold_66 . biological_region 62866 62870 0.999 - . logic_name=eponine scaffold_66 . biological_region 62888 62892 0.999 - . logic_name=eponine scaffold_66 . biological_region 62902 62908 0.999 + . logic_name=eponine scaffold_66 . biological_region 63363 63367 0.999 + . logic_name=eponine scaffold_66 . biological_region 64186 64186 0.999 + . logic_name=eponine scaffold_66 . biological_region 64917 64919 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 62870 63978 . + . ID=Physo119658;biotype=protein_coding;external_name=estExt_Genewise1.C_660067;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 62870 63978 . + . ID=Physo119658;Parent=Physo119658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 62870 63552 . + . ID=Physo119658.1;Parent=Physo119658;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_66 . CDS 63062 63552 . + 0 ID=Physo119658;Parent=Physo119658;rank=1 scaffold_66 . CDS 63617 63761 . + 0 ID=Physo119658;Parent=Physo119658;rank=2 scaffold_66 . exon 63617 63761 . + . ID=Physo119658.2;Parent=Physo119658;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 63838 63978 . + 0 ID=Physo119658;Parent=Physo119658;rank=3 scaffold_66 . exon 63838 63978 . + . ID=Physo119658.3;Parent=Physo119658;constitutive=1;rank=3 scaffold_66 ensembl protein_coding_gene 60077 62638 . + . ID=Physo138694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660013;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 60077 62638 . + . ID=Physo138694;Parent=Physo138694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 60077 62107 . + 0 ID=Physo138694;Parent=Physo138694;rank=1 scaffold_66 . exon 60077 62107 . + . ID=Physo138694.1;Parent=Physo138694;constitutive=1;rank=1 scaffold_66 . CDS 62183 62638 . + 0 ID=Physo138694;Parent=Physo138694;rank=2 scaffold_66 . exon 62183 62638 . + . ID=Physo138694.2;Parent=Physo138694;constitutive=1;rank=2 scaffold_66 ensembl protein_coding_gene 64266 65379 . - . ID=Physo157871;biotype=protein_coding;external_name=C_scaffold_66000001;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 64266 65379 . - . ID=Physo157871;Parent=Physo157871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 64266 64322 . - 0 ID=Physo157871;Parent=Physo157871;rank=3 scaffold_66 . exon 64266 64322 . - . ID=Physo157871.3;Parent=Physo157871;constitutive=1;rank=3 scaffold_66 . CDS 64405 65028 . - 0 ID=Physo157871;Parent=Physo157871;rank=2 scaffold_66 . exon 64405 65028 . - . ID=Physo157871.2;Parent=Physo157871;constitutive=1;rank=2 scaffold_66 . CDS 65098 65379 . - 0 ID=Physo157871;Parent=Physo157871;rank=1 scaffold_66 . exon 65098 65379 . - . ID=Physo157871.1;Parent=Physo157871;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 65627 68752 . + . ID=Physo157872;biotype=protein_coding;external_name=C_scaffold_66000002;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 65627 68752 . + . ID=Physo157872;Parent=Physo157872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 65627 65785 . + 0 ID=Physo157872;Parent=Physo157872;rank=1 scaffold_66 . exon 65627 65785 . + . ID=Physo157872.1;Parent=Physo157872;constitutive=1;rank=1 scaffold_66 . CDS 65912 66122 . + 0 ID=Physo157872;Parent=Physo157872;rank=2 scaffold_66 . exon 65912 66122 . + . ID=Physo157872.2;Parent=Physo157872;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . CDS 66159 66293 . + 0 ID=Physo157872;Parent=Physo157872;rank=3 scaffold_66 . exon 66159 66293 . + . ID=Physo157872.3;Parent=Physo157872;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 66459 66830 . + 0 ID=Physo157872;Parent=Physo157872;rank=4 scaffold_66 . exon 66459 66830 . + . ID=Physo157872.4;Parent=Physo157872;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 66975 67196 . + 0 ID=Physo157872;Parent=Physo157872;rank=5 scaffold_66 . exon 66975 67196 . + . ID=Physo157872.5;Parent=Physo157872;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_66 . CDS 67218 67373 . + 0 ID=Physo157872;Parent=Physo157872;rank=6 scaffold_66 . exon 67218 67373 . + . ID=Physo157872.6;Parent=Physo157872;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_66 . CDS 67686 68138 . + 0 ID=Physo157872;Parent=Physo157872;rank=7 scaffold_66 . exon 67686 68138 . + . ID=Physo157872.7;Parent=Physo157872;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_66 . CDS 68289 68373 . + 0 ID=Physo157872;Parent=Physo157872;rank=8 scaffold_66 . exon 68289 68373 . + . ID=Physo157872.8;Parent=Physo157872;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_66 . CDS 68407 68752 . + 0 ID=Physo157872;Parent=Physo157872;rank=9 scaffold_66 . exon 68407 68752 . + . ID=Physo157872.9;Parent=Physo157872;constitutive=1;ensembl_phase=2;rank=9 scaffold_66 ensembl protein_coding_gene 78053 79513 . - . ID=Physo119674;biotype=protein_coding;external_name=estExt_Genewise1.C_660083;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 78053 79513 . - . ID=Physo119674;Parent=Physo119674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 78053 79372 . - 0 ID=Physo119674;Parent=Physo119674;rank=1 scaffold_66 . exon 78053 79513 . - . ID=Physo119674.1;Parent=Physo119674;constitutive=1;ensembl_phase=-1;rank=1 scaffold_66 ensembl protein_coding_gene 69044 70993 . - . ID=Physo138698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660017;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 69044 70993 . - . ID=Physo138698;Parent=Physo138698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 69044 70993 . - 0 ID=Physo138698;Parent=Physo138698;rank=1 scaffold_66 . exon 69044 70993 . - . ID=Physo138698.1;Parent=Physo138698;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 71753 77931 . - . ID=Physo157877;biotype=protein_coding;external_name=C_scaffold_66000007;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 71753 77931 . - . ID=Physo157877;Parent=Physo157877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 71753 74931 . - 0 ID=Physo157877;Parent=Physo157877;rank=9 scaffold_66 . exon 71753 74931 . - . ID=Physo157877.9;Parent=Physo157877;constitutive=1;ensembl_phase=1;rank=9 scaffold_66 . CDS 75020 75122 . - 0 ID=Physo157877;Parent=Physo157877;rank=8 scaffold_66 . exon 75020 75122 . - . ID=Physo157877.8;Parent=Physo157877;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_66 . CDS 75204 75321 . - 0 ID=Physo157877;Parent=Physo157877;rank=7 scaffold_66 . exon 75204 75321 . - . ID=Physo157877.7;Parent=Physo157877;constitutive=1;ensembl_phase=2;rank=7 scaffold_66 . CDS 75613 75821 . - 0 ID=Physo157877;Parent=Physo157877;rank=6 scaffold_66 . exon 75613 75821 . - . ID=Physo157877.6;Parent=Physo157877;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_66 . CDS 75905 76005 . - 0 ID=Physo157877;Parent=Physo157877;rank=5 scaffold_66 . exon 75905 76005 . - . ID=Physo157877.5;Parent=Physo157877;constitutive=1;ensembl_phase=1;rank=5 scaffold_66 . CDS 76087 76603 . - 0 ID=Physo157877;Parent=Physo157877;rank=4 scaffold_66 . exon 76087 76603 . - . ID=Physo157877.4;Parent=Physo157877;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_66 . CDS 76637 77040 . - 0 ID=Physo157877;Parent=Physo157877;rank=3 scaffold_66 . exon 76637 77040 . - . ID=Physo157877.3;Parent=Physo157877;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 77530 77767 . - 0 ID=Physo157877;Parent=Physo157877;rank=2 scaffold_66 . exon 77530 77767 . - . ID=Physo157877.2;Parent=Physo157877;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . CDS 77902 77931 . - 0 ID=Physo157877;Parent=Physo157877;rank=1 scaffold_66 . exon 77902 77931 . - . ID=Physo157877.1;Parent=Physo157877;constitutive=1;rank=1 scaffold_66 . biological_region 79565 79570 0.999 + . logic_name=eponine scaffold_66 . biological_region 79635 79639 0.999 - . logic_name=eponine scaffold_66 . biological_region 79671 79675 0.999 - . logic_name=eponine scaffold_66 . biological_region 79757 79757 0.999 - . logic_name=eponine scaffold_66 . repeat_region 81307 81389 . ? . description=trf scaffold_66 . repeat_region 81308 81413 . ? . description=trf scaffold_66 . repeat_region 81471 81515 . ? . description=trf scaffold_66 . repeat_region 81597 81701 . ? . description=trf scaffold_66 . repeat_region 81597 81716 . ? . description=trf scaffold_66 . repeat_region 81597 81716 . ? . description=trf scaffold_66 . repeat_region 81620 81669 . ? . description=trf scaffold_66 . repeat_region 81769 81809 . ? . description=trf scaffold_66 . repeat_region 83722 83745 . ? . description=trf scaffold_66 . biological_region 83735 83738 0.999 + . logic_name=eponine scaffold_66 . biological_region 83750 83752 0.999 - . logic_name=eponine scaffold_66 . biological_region 83786 83786 0.999 - . logic_name=eponine scaffold_66 . repeat_region 84176 84203 . ? . description=trf scaffold_66 . repeat_region 84176 84203 . ? . description=dust scaffold_66 . biological_region 84397 84397 0.999 - . logic_name=eponine scaffold_66 . biological_region 84569 84569 0.999 + . logic_name=eponine scaffold_66 . biological_region 84667 84671 0.999 + . logic_name=eponine scaffold_66 . biological_region 84987 84991 0.999 - . logic_name=eponine scaffold_66 . biological_region 85007 85011 0.999 + . logic_name=eponine scaffold_66 . biological_region 85045 85046 0.999 + . logic_name=eponine scaffold_66 . biological_region 86166 86168 0.999 + . logic_name=eponine scaffold_66 . biological_region 86526 86527 0.999 - . logic_name=eponine scaffold_66 . biological_region 86889 86890 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 79950 80441 . + . ID=Physo138701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660020;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 79950 80441 . + . ID=Physo138701;Parent=Physo138701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 79950 79959 . + 0 ID=Physo138701;Parent=Physo138701;rank=1 scaffold_66 . exon 79950 79959 . + . ID=Physo138701.1;Parent=Physo138701;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 80031 80172 . + 0 ID=Physo138701;Parent=Physo138701;rank=2 scaffold_66 . exon 80031 80172 . + . ID=Physo138701.2;Parent=Physo138701;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_66 . CDS 80237 80441 . + 0 ID=Physo138701;Parent=Physo138701;rank=3 scaffold_66 . exon 80237 80441 . + . ID=Physo138701.3;Parent=Physo138701;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 ensembl protein_coding_gene 80503 82127 . - . ID=Physo138702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660021;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 80503 82127 . - . ID=Physo138702;Parent=Physo138702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 80503 82127 . - . ID=Physo138702.1;Parent=Physo138702;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_66 . CDS 80610 82025 . - 0 ID=Physo138702;Parent=Physo138702;rank=1 scaffold_66 ensembl protein_coding_gene 82738 84810 . - . ID=Physo138703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660022;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 82738 84810 . - . ID=Physo138703;Parent=Physo138703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 82738 84071 . - 0 ID=Physo138703;Parent=Physo138703;rank=3 scaffold_66 . exon 82738 84071 . - . ID=Physo138703.3;Parent=Physo138703;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 84215 84426 . - 0 ID=Physo138703;Parent=Physo138703;rank=2 scaffold_66 . exon 84215 84426 . - . ID=Physo138703.2;Parent=Physo138703;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 84542 84810 . - 0 ID=Physo138703;Parent=Physo138703;rank=1 scaffold_66 . exon 84542 84810 . - . ID=Physo138703.1;Parent=Physo138703;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 85681 86683 . - . ID=Physo138704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660023;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 85681 86683 . - . ID=Physo138704;Parent=Physo138704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 85681 86249 . - 0 ID=Physo138704;Parent=Physo138704;rank=2 scaffold_66 . exon 85681 86249 . - . ID=Physo138704.2;Parent=Physo138704;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 86353 86683 . - 0 ID=Physo138704;Parent=Physo138704;rank=1 scaffold_66 . exon 86353 86683 . - . ID=Physo138704.1;Parent=Physo138704;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 87145 88707 . - . ID=Physo138705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660024;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 87145 88707 . - . ID=Physo138705;Parent=Physo138705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 87145 87580 . - . ID=Physo138705.5;Parent=Physo138705;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_66 . CDS 87231 87580 . - 0 ID=Physo138705;Parent=Physo138705;rank=5 scaffold_66 . CDS 87658 87720 . - 0 ID=Physo138705;Parent=Physo138705;rank=4 scaffold_66 . exon 87658 87720 . - . ID=Physo138705.4;Parent=Physo138705;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 87787 87823 . - 0 ID=Physo138705;Parent=Physo138705;rank=3 scaffold_66 . exon 87787 87823 . - . ID=Physo138705.3;Parent=Physo138705;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_66 . CDS 88234 88365 . - 0 ID=Physo138705;Parent=Physo138705;rank=2 scaffold_66 . CDS 88441 88707 . - 0 ID=Physo138705;Parent=Physo138705;rank=1 scaffold_66 ensembl protein_coding_gene 89060 89773 . + . ID=Physo109160;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_660002;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 89060 89773 . + . ID=Physo109160;Parent=Physo109160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 89060 89638 . + 0 ID=Physo109160;Parent=Physo109160;rank=1 scaffold_66 . exon 89060 89773 . + . ID=Physo109160.1;Parent=Physo109160;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_66 ensembl protein_coding_gene 90121 92420 . - . ID=Physo109161;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_660003;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 90121 92420 . - . ID=Physo109161;Parent=Physo109161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 90121 91846 . - . ID=Physo109161.2;Parent=Physo109161;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_66 . CDS 90302 91846 . - 0 ID=Physo109161;Parent=Physo109161;rank=2 scaffold_66 . CDS 92088 92420 . - 0 ID=Physo109161;Parent=Physo109161;rank=1 scaffold_66 . exon 92088 92420 . - . ID=Physo109161.1;Parent=Physo109161;constitutive=1;rank=1 scaffold_66 . exon 88234 88365 . - . ID=Physo138705.2;Parent=Physo138705;constitutive=1;rank=2 scaffold_66 . exon 88441 88707 . - . ID=Physo138705.1;Parent=Physo138705;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 93774 96637 . + . ID=Physo138708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660027;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 93774 96637 . + . ID=Physo138708;Parent=Physo138708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 93774 94531 . + 0 ID=Physo138708;Parent=Physo138708;rank=1 scaffold_66 . exon 93774 94531 . + . ID=Physo138708.1;Parent=Physo138708;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 94603 96637 . + 0 ID=Physo138708;Parent=Physo138708;rank=2 scaffold_66 . exon 94603 96637 . + . ID=Physo138708.2;Parent=Physo138708;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 ensembl protein_coding_gene 97331 98650 . + . ID=Physo138709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660028;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 97331 98650 . + . ID=Physo138709;Parent=Physo138709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 97331 98650 . + 0 ID=Physo138709;Parent=Physo138709;rank=1 scaffold_66 . exon 97331 98650 . + . ID=Physo138709.1;Parent=Physo138709;constitutive=1;rank=1 scaffold_66 . biological_region 98196 98199 0.999 + . logic_name=eponine scaffold_66 . biological_region 99598 99599 0.999 + . logic_name=eponine scaffold_66 . biological_region 99970 99972 0.999 - . logic_name=eponine scaffold_66 . biological_region 101302 101304 0.999 - . logic_name=eponine scaffold_66 . biological_region 101337 101338 0.999 - . logic_name=eponine scaffold_66 . biological_region 101479 101481 0.999 + . logic_name=eponine scaffold_66 . biological_region 101498 101498 0.999 - . logic_name=eponine scaffold_66 . biological_region 102837 102839 0.999 - . logic_name=eponine scaffold_66 . biological_region 104982 104984 0.999 + . logic_name=eponine scaffold_66 . biological_region 105017 105021 0.999 - . logic_name=eponine scaffold_66 . biological_region 105111 105115 0.999 - . logic_name=eponine scaffold_66 . biological_region 105966 105968 0.999 - . logic_name=eponine scaffold_66 . biological_region 106517 106520 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 99075 100607 . - . ID=Physo109162;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_660004;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 99075 100607 . - . ID=Physo109162;Parent=Physo109162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 99075 100607 . - 0 ID=Physo109162;Parent=Physo109162;rank=1 scaffold_66 . exon 99075 100607 . - . ID=Physo109162.1;Parent=Physo109162;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 101222 102414 . + . ID=Physo109163;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_660005;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 101222 102414 . + . ID=Physo109163;Parent=Physo109163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 101222 101306 . + 0 ID=Physo109163;Parent=Physo109163;rank=1 scaffold_66 . exon 101222 101306 . + . ID=Physo109163.1;Parent=Physo109163;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 101327 102168 . + 0 ID=Physo109163;Parent=Physo109163;rank=2 scaffold_66 . exon 101327 102168 . + . ID=Physo109163.2;Parent=Physo109163;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 102205 102414 . + 0 ID=Physo109163;Parent=Physo109163;rank=3 scaffold_66 . exon 102205 102414 . + . ID=Physo109163.3;Parent=Physo109163;constitutive=1;rank=3 scaffold_66 ensembl protein_coding_gene 102575 105307 . - . ID=Physo138712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660031;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 102575 105307 . - . ID=Physo138712;Parent=Physo138712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 102575 105307 . - 0 ID=Physo138712;Parent=Physo138712;rank=1 scaffold_66 . exon 102575 105307 . - . ID=Physo138712.1;Parent=Physo138712;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 105722 106834 . + . ID=Physo138713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660032;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 105722 106834 . + . ID=Physo138713;Parent=Physo138713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 105722 106834 . + 0 ID=Physo138713;Parent=Physo138713;rank=1 scaffold_66 . exon 105722 106834 . + . ID=Physo138713.1;Parent=Physo138713;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 107065 108664 . + . ID=Physo138714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660033;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 107065 108664 . + . ID=Physo138714;Parent=Physo138714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 107065 108474 . + 0 ID=Physo138714;Parent=Physo138714;rank=1 scaffold_66 . exon 107065 108474 . + . ID=Physo138714.1;Parent=Physo138714;constitutive=1;rank=1 scaffold_66 . CDS 108533 108664 . + 0 ID=Physo138714;Parent=Physo138714;rank=2 scaffold_66 . repeat_region 110575 110595 . ? . description=dust scaffold_66 . repeat_region 110575 110599 . ? . description=trf scaffold_66 . repeat_region 110698 110738 . ? . description=trf scaffold_66 . repeat_region 110702 110751 . ? . description=trf scaffold_66 . repeat_region 114135 114154 . ? . description=trf scaffold_66 ensembl protein_coding_gene 109561 110563 . + . ID=Physo109164;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_660006;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 109561 110563 . + . ID=Physo109164;Parent=Physo109164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 109561 109933 . + 0 ID=Physo109164;Parent=Physo109164;rank=1 scaffold_66 . exon 109561 109933 . + . ID=Physo109164.1;Parent=Physo109164;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 110019 110563 . + 0 ID=Physo109164;Parent=Physo109164;rank=2 scaffold_66 . exon 110019 110563 . + . ID=Physo109164.2;Parent=Physo109164;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 ensembl protein_coding_gene 117324 118334 . - . ID=Physo109165;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_660007;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 117324 118334 . - . ID=Physo109165;Parent=Physo109165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 117324 118334 . - 0 ID=Physo109165;Parent=Physo109165;rank=1 scaffold_66 . exon 117324 118334 . - . ID=Physo109165.1;Parent=Physo109165;constitutive=1;rank=1 scaffold_66 . exon 108533 108664 . + . ID=Physo138714.2;Parent=Physo138714;constitutive=1;rank=2 scaffold_66 ensembl protein_coding_gene 110863 113487 . + . ID=Physo138716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660035;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 110863 113487 . + . ID=Physo138716;Parent=Physo138716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 110863 113487 . + 0 ID=Physo138716;Parent=Physo138716;rank=1 scaffold_66 . exon 110863 113487 . + . ID=Physo138716.1;Parent=Physo138716;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 113616 116674 . - . ID=Physo138717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660036;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 113616 116674 . - . ID=Physo138717;Parent=Physo138717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 113616 115703 . - 0 ID=Physo138717;Parent=Physo138717;rank=2 scaffold_66 . exon 113616 115703 . - . ID=Physo138717.2;Parent=Physo138717;constitutive=1;rank=2 scaffold_66 . CDS 115772 116674 . - 0 ID=Physo138717;Parent=Physo138717;rank=1 scaffold_66 . exon 115772 116674 . - . ID=Physo138717.1;Parent=Physo138717;constitutive=1;rank=1 scaffold_66 . biological_region 120687 120691 0.999 - . logic_name=eponine scaffold_66 . biological_region 120712 120717 0.999 - . logic_name=eponine scaffold_66 . biological_region 123920 123923 0.999 - . logic_name=eponine scaffold_66 . biological_region 124105 124107 0.999 + . logic_name=eponine scaffold_66 . biological_region 125076 125078 0.999 - . logic_name=eponine scaffold_66 . biological_region 125374 125376 0.999 + . logic_name=eponine scaffold_66 . biological_region 125435 125435 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 118439 118958 . - . ID=Physo138719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660038;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 118439 118958 . - . ID=Physo138719;Parent=Physo138719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 118439 118958 . - . ID=Physo138719.1;Parent=Physo138719;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_66 . CDS 118440 118958 . - 0 ID=Physo138719;Parent=Physo138719;rank=1 scaffold_66 ensembl protein_coding_gene 120558 125782 . + . ID=Physo157878;biotype=protein_coding;external_name=C_scaffold_66000008;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 120558 125782 . + . ID=Physo157878;Parent=Physo157878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 120558 120678 . + 0 ID=Physo157878;Parent=Physo157878;rank=1 scaffold_66 . exon 120558 120678 . + . ID=Physo157878.1;Parent=Physo157878;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 120791 121444 . + 0 ID=Physo157878;Parent=Physo157878;rank=2 scaffold_66 . exon 120791 121444 . + . ID=Physo157878.2;Parent=Physo157878;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 121469 121746 . + 0 ID=Physo157878;Parent=Physo157878;rank=3 scaffold_66 . exon 121469 121746 . + . ID=Physo157878.3;Parent=Physo157878;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 121942 122091 . + 0 ID=Physo157878;Parent=Physo157878;rank=4 scaffold_66 . exon 121942 122091 . + . ID=Physo157878.4;Parent=Physo157878;constitutive=1;rank=4 scaffold_66 . CDS 122282 122295 . + 0 ID=Physo157878;Parent=Physo157878;rank=5 scaffold_66 . exon 122282 122295 . + . ID=Physo157878.5;Parent=Physo157878;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_66 . CDS 122376 122525 . + 0 ID=Physo157878;Parent=Physo157878;rank=6 scaffold_66 . exon 122376 122525 . + . ID=Physo157878.6;Parent=Physo157878;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_66 . CDS 122634 122710 . + 0 ID=Physo157878;Parent=Physo157878;rank=7 scaffold_66 . exon 122634 122710 . + . ID=Physo157878.7;Parent=Physo157878;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_66 . CDS 122849 123644 . + 0 ID=Physo157878;Parent=Physo157878;rank=8 scaffold_66 . exon 122849 123644 . + . ID=Physo157878.8;Parent=Physo157878;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_66 . CDS 123759 123845 . + 0 ID=Physo157878;Parent=Physo157878;rank=9 scaffold_66 . exon 123759 123845 . + . ID=Physo157878.9;Parent=Physo157878;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_66 . CDS 123984 124469 . + 0 ID=Physo157878;Parent=Physo157878;rank=10 scaffold_66 . exon 123984 124469 . + . ID=Physo157878.10;Parent=Physo157878;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_66 . CDS 124702 125782 . + 0 ID=Physo157878;Parent=Physo157878;rank=11 scaffold_66 . exon 124702 125782 . + . ID=Physo157878.11;Parent=Physo157878;constitutive=1;ensembl_phase=2;rank=11 scaffold_66 . repeat_region 127744 127759 . ? . description=dust scaffold_66 . repeat_region 130276 130355 . ? . description=trf scaffold_66 . repeat_region 131894 131918 . ? . description=trf scaffold_66 ensembl protein_coding_gene 127976 129751 . + . ID=Physo138723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660042;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 127976 129751 . + . ID=Physo138723;Parent=Physo138723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 127976 129751 . + 0 ID=Physo138723;Parent=Physo138723;rank=1 scaffold_66 . exon 127976 129751 . + . ID=Physo138723.1;Parent=Physo138723;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 129850 131310 . + . ID=Physo138724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660043;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 129850 131310 . + . ID=Physo138724;Parent=Physo138724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 129850 131310 . + 0 ID=Physo138724;Parent=Physo138724;rank=1 scaffold_66 . exon 129850 131310 . + . ID=Physo138724.1;Parent=Physo138724;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 131518 133011 . + . ID=Physo138725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660044;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 131518 133011 . + . ID=Physo138725;Parent=Physo138725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 131518 133011 . + 0 ID=Physo138725;Parent=Physo138725;rank=1 scaffold_66 . exon 131518 133011 . + . ID=Physo138725.1;Parent=Physo138725;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 135242 136909 . + . ID=Physo138726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660045;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 135242 136909 . + . ID=Physo138726;Parent=Physo138726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 135242 136909 . + 0 ID=Physo138726;Parent=Physo138726;rank=1 scaffold_66 . exon 135242 136909 . + . ID=Physo138726.1;Parent=Physo138726;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 136991 138695 . - . ID=Physo138727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660046;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 136991 138695 . - . ID=Physo138727;Parent=Physo138727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 136991 137002 . - 0 ID=Physo138727;Parent=Physo138727;rank=6 scaffold_66 . exon 136991 137002 . - . ID=Physo138727.6;Parent=Physo138727;constitutive=1;rank=6 scaffold_66 . CDS 137035 137685 . - 0 ID=Physo138727;Parent=Physo138727;rank=5 scaffold_66 . exon 137035 137685 . - . ID=Physo138727.5;Parent=Physo138727;constitutive=1;rank=5 scaffold_66 . CDS 137712 138101 . - 0 ID=Physo138727;Parent=Physo138727;rank=4 scaffold_66 . CDS 138131 138274 . - 0 ID=Physo138727;Parent=Physo138727;rank=3 scaffold_66 . CDS 138359 138605 . - 0 ID=Physo138727;Parent=Physo138727;rank=2 scaffold_66 . CDS 138637 138695 . - 0 ID=Physo138727;Parent=Physo138727;rank=1 scaffold_66 . biological_region 146006 146007 0.999 + . logic_name=eponine scaffold_66 . exon 137712 138101 . - . ID=Physo138727.4;Parent=Physo138727;constitutive=1;rank=4 scaffold_66 . exon 138131 138274 . - . ID=Physo138727.3;Parent=Physo138727;constitutive=1;rank=3 scaffold_66 . exon 138359 138605 . - . ID=Physo138727.2;Parent=Physo138727;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . exon 138637 138695 . - . ID=Physo138727.1;Parent=Physo138727;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 139744 141341 . - . ID=Physo138728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660047;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 139744 141341 . - . ID=Physo138728;Parent=Physo138728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 139744 139824 . - . ID=Physo138728.2;Parent=Physo138728;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_66 . CDS 139746 139824 . - 0 ID=Physo138728;Parent=Physo138728;rank=2 scaffold_66 . CDS 139849 141341 . - 0 ID=Physo138728;Parent=Physo138728;rank=1 scaffold_66 . exon 139849 141341 . - . ID=Physo138728.1;Parent=Physo138728;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 143952 145645 . + . ID=Physo138729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660048;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 143952 145645 . + . ID=Physo138729;Parent=Physo138729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 143952 144640 . + 0 ID=Physo138729;Parent=Physo138729;rank=1 scaffold_66 . exon 143952 144640 . + . ID=Physo138729.1;Parent=Physo138729;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 144885 144940 . + 0 ID=Physo138729;Parent=Physo138729;rank=2 scaffold_66 . exon 144885 144940 . + . ID=Physo138729.2;Parent=Physo138729;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 145046 145161 . + 0 ID=Physo138729;Parent=Physo138729;rank=3 scaffold_66 . exon 145046 145161 . + . ID=Physo138729.3;Parent=Physo138729;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 145193 145645 . + 0 ID=Physo138729;Parent=Physo138729;rank=4 scaffold_66 . exon 145193 145645 . + . ID=Physo138729.4;Parent=Physo138729;constitutive=1;rank=4 scaffold_66 ensembl protein_coding_gene 145746 148153 . - . ID=Physo138730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660049;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 145746 148153 . - . ID=Physo138730;Parent=Physo138730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 145746 146280 . - 0 ID=Physo138730;Parent=Physo138730;rank=4 scaffold_66 . exon 145746 146280 . - . ID=Physo138730.4;Parent=Physo138730;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 146779 147384 . - 0 ID=Physo138730;Parent=Physo138730;rank=3 scaffold_66 . exon 146779 147384 . - . ID=Physo138730.3;Parent=Physo138730;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_66 . CDS 147429 147496 . - 0 ID=Physo138730;Parent=Physo138730;rank=2 scaffold_66 . CDS 147593 148153 . - 0 ID=Physo138730;Parent=Physo138730;rank=1 scaffold_66 . exon 147429 147496 . - . ID=Physo138730.2;Parent=Physo138730;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . exon 147593 148153 . - . ID=Physo138730.1;Parent=Physo138730;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 149100 149588 . + . ID=Physo138731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660050;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 149100 149588 . + . ID=Physo138731;Parent=Physo138731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 149100 149588 . + 0 ID=Physo138731;Parent=Physo138731;rank=1 scaffold_66 . exon 149100 149588 . + . ID=Physo138731.1;Parent=Physo138731;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 150696 152423 . - . ID=Physo138732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660051;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 150696 152423 . - . ID=Physo138732;Parent=Physo138732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 150696 152423 . - 0 ID=Physo138732;Parent=Physo138732;rank=1 scaffold_66 . exon 150696 152423 . - . ID=Physo138732.1;Parent=Physo138732;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 153414 158112 . - . ID=Physo157882;biotype=protein_coding;external_name=C_scaffold_66000012;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 153414 158112 . - . ID=Physo157882;Parent=Physo157882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 153414 153897 . - 0 ID=Physo157882;Parent=Physo157882;rank=14 scaffold_66 . exon 153414 153897 . - . ID=Physo157882.14;Parent=Physo157882;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_66 . CDS 153945 153964 . - 0 ID=Physo157882;Parent=Physo157882;rank=13 scaffold_66 . exon 153945 153964 . - . ID=Physo157882.13;Parent=Physo157882;constitutive=1;ensembl_phase=1;rank=13 scaffold_66 . CDS 154044 154792 . - 0 ID=Physo157882;Parent=Physo157882;rank=12 scaffold_66 . exon 154044 154792 . - . ID=Physo157882.12;Parent=Physo157882;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_66 . CDS 155268 155417 . - 0 ID=Physo157882;Parent=Physo157882;rank=11 scaffold_66 . exon 155268 155417 . - . ID=Physo157882.11;Parent=Physo157882;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_66 . CDS 155484 155665 . - 0 ID=Physo157882;Parent=Physo157882;rank=10 scaffold_66 . exon 155484 155665 . - . ID=Physo157882.10;Parent=Physo157882;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_66 . CDS 155736 155925 . - 0 ID=Physo157882;Parent=Physo157882;rank=9 scaffold_66 . exon 155736 155925 . - . ID=Physo157882.9;Parent=Physo157882;constitutive=1;ensembl_phase=2;rank=9 scaffold_66 . CDS 155990 156184 . - 0 ID=Physo157882;Parent=Physo157882;rank=8 scaffold_66 . exon 155990 156184 . - . ID=Physo157882.8;Parent=Physo157882;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_66 . CDS 156340 156432 . - 0 ID=Physo157882;Parent=Physo157882;rank=7 scaffold_66 . exon 156340 156432 . - . ID=Physo157882.7;Parent=Physo157882;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_66 . CDS 156509 156731 . - 0 ID=Physo157882;Parent=Physo157882;rank=6 scaffold_66 . exon 156509 156731 . - . ID=Physo157882.6;Parent=Physo157882;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_66 . CDS 156759 157137 . - 0 ID=Physo157882;Parent=Physo157882;rank=5 scaffold_66 . exon 156759 157137 . - . ID=Physo157882.5;Parent=Physo157882;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_66 . CDS 157224 157455 . - 0 ID=Physo157882;Parent=Physo157882;rank=4 scaffold_66 . CDS 157636 157838 . - 0 ID=Physo157882;Parent=Physo157882;rank=3 scaffold_66 . CDS 157925 158024 . - 0 ID=Physo157882;Parent=Physo157882;rank=2 scaffold_66 . CDS 158090 158112 . - 0 ID=Physo157882;Parent=Physo157882;rank=1 scaffold_66 . biological_region 158239 158239 0.999 - . logic_name=eponine scaffold_66 . biological_region 159155 159162 0.999 - . logic_name=eponine scaffold_66 . biological_region 159211 159215 0.999 + . logic_name=eponine scaffold_66 . repeat_region 160215 160312 . ? . description=trf scaffold_66 . repeat_region 160659 160679 . ? . description=trf scaffold_66 . biological_region 162625 162627 0.999 + . logic_name=eponine scaffold_66 . biological_region 164478 164479 0.999 + . logic_name=eponine scaffold_66 . biological_region 164519 164522 0.999 - . logic_name=eponine scaffold_66 . repeat_region 165245 165298 . ? . description=trf scaffold_66 . repeat_region 165248 165306 . ? . description=trf scaffold_66 . repeat_region 165572 165621 . ? . description=trf scaffold_66 ensembl protein_coding_gene 158831 159660 . + . ID=Physo138735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660054;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 158831 159660 . + . ID=Physo138735;Parent=Physo138735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 158831 159660 . + . ID=Physo138735.1;Parent=Physo138735;constitutive=1;ensembl_phase=-1;rank=1 scaffold_66 . CDS 158908 159660 . + 0 ID=Physo138735;Parent=Physo138735;rank=1 scaffold_66 ensembl protein_coding_gene 163834 168063 . - . ID=Physo138738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660057;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 163834 168063 . - . ID=Physo138738;Parent=Physo138738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 163834 164779 . - 0 ID=Physo138738;Parent=Physo138738;rank=2 scaffold_66 . exon 163834 164779 . - . ID=Physo138738.2;Parent=Physo138738;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 165032 168063 . - 0 ID=Physo138738;Parent=Physo138738;rank=1 scaffold_66 . exon 165032 168063 . - . ID=Physo138738.1;Parent=Physo138738;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . exon 157224 157455 . - . ID=Physo157882.4;Parent=Physo157882;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . exon 157636 157838 . - . ID=Physo157882.3;Parent=Physo157882;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_66 . exon 157925 158024 . - . ID=Physo157882.2;Parent=Physo157882;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . exon 158090 158112 . - . ID=Physo157882.1;Parent=Physo157882;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 161019 163713 . + . ID=Physo157884;biotype=protein_coding;external_name=C_scaffold_66000014;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 161019 163713 . + . ID=Physo157884;Parent=Physo157884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 161019 161548 . + 0 ID=Physo157884;Parent=Physo157884;rank=1 scaffold_66 . exon 161019 161548 . + . ID=Physo157884.1;Parent=Physo157884;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 161570 162301 . + 0 ID=Physo157884;Parent=Physo157884;rank=2 scaffold_66 . exon 161570 162301 . + . ID=Physo157884.2;Parent=Physo157884;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_66 . CDS 162549 162761 . + 0 ID=Physo157884;Parent=Physo157884;rank=3 scaffold_66 . exon 162549 162761 . + . ID=Physo157884.3;Parent=Physo157884;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_66 . CDS 162843 163002 . + 0 ID=Physo157884;Parent=Physo157884;rank=4 scaffold_66 . exon 162843 163002 . + . ID=Physo157884.4;Parent=Physo157884;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 163024 163116 . + 0 ID=Physo157884;Parent=Physo157884;rank=5 scaffold_66 . exon 163024 163116 . + . ID=Physo157884.5;Parent=Physo157884;constitutive=1;rank=5 scaffold_66 . CDS 163192 163321 . + 0 ID=Physo157884;Parent=Physo157884;rank=6 scaffold_66 . exon 163192 163321 . + . ID=Physo157884.6;Parent=Physo157884;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_66 . CDS 163538 163713 . + 0 ID=Physo157884;Parent=Physo157884;rank=7 scaffold_66 . exon 163538 163713 . + . ID=Physo157884.7;Parent=Physo157884;constitutive=1;ensembl_phase=1;rank=7 scaffold_66 . repeat_region 169865 169884 . ? . description=dust scaffold_66 ensembl protein_coding_gene 170348 171352 . + . ID=Physo138739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660058;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 170348 171352 . + . ID=Physo138739;Parent=Physo138739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 170348 170374 . + 0 ID=Physo138739;Parent=Physo138739;rank=1 scaffold_66 . exon 170348 170374 . + . ID=Physo138739.1;Parent=Physo138739;constitutive=1;rank=1 scaffold_66 . CDS 170452 170466 . + 0 ID=Physo138739;Parent=Physo138739;rank=2 scaffold_66 . exon 170452 170466 . + . ID=Physo138739.2;Parent=Physo138739;constitutive=1;rank=2 scaffold_66 . CDS 170691 170834 . + 0 ID=Physo138739;Parent=Physo138739;rank=3 scaffold_66 . exon 170691 170834 . + . ID=Physo138739.3;Parent=Physo138739;constitutive=1;rank=3 scaffold_66 . CDS 170912 171352 . + 0 ID=Physo138739;Parent=Physo138739;rank=4 scaffold_66 . exon 170912 171352 . + . ID=Physo138739.4;Parent=Physo138739;constitutive=1;rank=4 scaffold_66 ensembl protein_coding_gene 171529 172503 . - . ID=Physo138740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660059;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 171529 172503 . - . ID=Physo138740;Parent=Physo138740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 171529 172142 . - 0 ID=Physo138740;Parent=Physo138740;rank=2 scaffold_66 . exon 171529 172142 . - . ID=Physo138740.2;Parent=Physo138740;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 172215 172503 . - 0 ID=Physo138740;Parent=Physo138740;rank=1 scaffold_66 . exon 172215 172503 . - . ID=Physo138740.1;Parent=Physo138740;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . biological_region 181189 181190 0.999 + . logic_name=eponine scaffold_66 . biological_region 183981 183984 0.999 - . logic_name=eponine scaffold_66 . biological_region 184443 184444 0.999 + . logic_name=eponine scaffold_66 . biological_region 184495 184502 0.999 - . logic_name=eponine scaffold_66 . biological_region 184528 184531 0.999 - . logic_name=eponine scaffold_66 . biological_region 184621 184625 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 180791 183556 . + . ID=Physo138741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660060;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 180791 183556 . + . ID=Physo138741;Parent=Physo138741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 180791 183556 . + 0 ID=Physo138741;Parent=Physo138741;rank=1 scaffold_66 . exon 180791 183556 . + . ID=Physo138741.1;Parent=Physo138741;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 183662 184977 . - . ID=Physo138742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660061;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 183662 184977 . - . ID=Physo138742;Parent=Physo138742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 183662 184441 . - 0 ID=Physo138742;Parent=Physo138742;rank=2 scaffold_66 . exon 183662 184441 . - . ID=Physo138742.2;Parent=Physo138742;constitutive=1;rank=2 scaffold_66 . CDS 184498 184977 . - 0 ID=Physo138742;Parent=Physo138742;rank=1 scaffold_66 . exon 184498 184977 . - . ID=Physo138742.1;Parent=Physo138742;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 185145 189660 . + . ID=Physo138743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660062;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 185145 189660 . + . ID=Physo138743;Parent=Physo138743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 185145 186213 . + 0 ID=Physo138743;Parent=Physo138743;rank=1 scaffold_66 . exon 185145 186213 . + . ID=Physo138743.1;Parent=Physo138743;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 186628 186828 . + 0 ID=Physo138743;Parent=Physo138743;rank=2 scaffold_66 . CDS 187001 187022 . + 0 ID=Physo138743;Parent=Physo138743;rank=3 scaffold_66 . CDS 187055 189015 . + 0 ID=Physo138743;Parent=Physo138743;rank=4 scaffold_66 . CDS 189083 189198 . + 0 ID=Physo138743;Parent=Physo138743;rank=5 scaffold_66 . CDS 189266 189507 . + 0 ID=Physo138743;Parent=Physo138743;rank=6 scaffold_66 . CDS 189582 189660 . + 0 ID=Physo138743;Parent=Physo138743;rank=7 scaffold_66 . repeat_region 195302 195310 . ? . description=dust scaffold_66 ensembl protein_coding_gene 191257 193083 . - . ID=Physo109166;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_660008;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 191257 193083 . - . ID=Physo109166;Parent=Physo109166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 191257 192094 . - . ID=Physo109166.4;Parent=Physo109166;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_66 . CDS 191864 192094 . - 0 ID=Physo109166;Parent=Physo109166;rank=4 scaffold_66 . CDS 192174 192740 . - 0 ID=Physo109166;Parent=Physo109166;rank=3 scaffold_66 . exon 192174 192740 . - . ID=Physo109166.3;Parent=Physo109166;constitutive=1;rank=3 scaffold_66 . CDS 192810 192885 . - 0 ID=Physo109166;Parent=Physo109166;rank=2 scaffold_66 . exon 192810 192885 . - . ID=Physo109166.2;Parent=Physo109166;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 192962 193056 . - 0 ID=Physo109166;Parent=Physo109166;rank=1 scaffold_66 . exon 192962 193083 . - . ID=Physo109166.1;Parent=Physo109166;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_66 . exon 186628 186828 . + . ID=Physo138743.2;Parent=Physo138743;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . exon 187001 187022 . + . ID=Physo138743.3;Parent=Physo138743;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_66 . exon 187055 189015 . + . ID=Physo138743.4;Parent=Physo138743;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_66 . exon 189083 189198 . + . ID=Physo138743.5;Parent=Physo138743;constitutive=1;ensembl_phase=1;rank=5 scaffold_66 . exon 189266 189507 . + . ID=Physo138743.6;Parent=Physo138743;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_66 . exon 189582 189660 . + . ID=Physo138743.7;Parent=Physo138743;constitutive=1;ensembl_phase=2;rank=7 scaffold_66 ensembl protein_coding_gene 189874 190741 . - . ID=Physo138744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660063;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 189874 190741 . - . ID=Physo138744;Parent=Physo138744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 189874 189967 . - 0 ID=Physo138744;Parent=Physo138744;rank=3 scaffold_66 . exon 189874 189967 . - . ID=Physo138744.3;Parent=Physo138744;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 190018 190577 . - 0 ID=Physo138744;Parent=Physo138744;rank=2 scaffold_66 . exon 190018 190577 . - . ID=Physo138744.2;Parent=Physo138744;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 190694 190741 . - 0 ID=Physo138744;Parent=Physo138744;rank=1 scaffold_66 . exon 190694 190741 . - . ID=Physo138744.1;Parent=Physo138744;constitutive=1;rank=1 scaffold_66 . repeat_region 200082 200132 . ? . description=trf scaffold_66 . repeat_region 202289 202398 . ? . description=trf scaffold_66 . repeat_region 203649 203679 . ? . description=trf scaffold_66 . biological_region 207522 207523 0.999 + . logic_name=eponine scaffold_66 . biological_region 212101 212106 0.999 + . logic_name=eponine scaffold_66 . biological_region 214009 214014 0.999 + . logic_name=eponine scaffold_66 . biological_region 214028 214032 0.999 - . logic_name=eponine scaffold_66 . biological_region 214111 214116 0.999 + . logic_name=eponine scaffold_66 . repeat_region 214642 214650 . ? . description=dust scaffold_66 . biological_region 214766 214768 0.999 - . logic_name=eponine scaffold_66 . repeat_region 214801 214811 . ? . description=dust scaffold_66 . biological_region 214927 214929 0.999 + . logic_name=eponine scaffold_66 . biological_region 214959 214959 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 206917 208121 . + . ID=Physo138747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660066;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 206917 208121 . + . ID=Physo138747;Parent=Physo138747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 206917 207604 . + . ID=Physo138747.1;Parent=Physo138747;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_66 . CDS 207015 207604 . + 0 ID=Physo138747;Parent=Physo138747;rank=1 scaffold_66 . CDS 207626 207878 . + 0 ID=Physo138747;Parent=Physo138747;rank=2 scaffold_66 . exon 207626 207878 . + . ID=Physo138747.2;Parent=Physo138747;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 207924 208121 . + 0 ID=Physo138747;Parent=Physo138747;rank=3 scaffold_66 . exon 207924 208121 . + . ID=Physo138747.3;Parent=Physo138747;constitutive=1;rank=3 scaffold_66 ensembl protein_coding_gene 210080 211669 . - . ID=Physo138748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660067;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 210080 211669 . - . ID=Physo138748;Parent=Physo138748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 210080 210399 . - 0 ID=Physo138748;Parent=Physo138748;rank=4 scaffold_66 . exon 210080 210399 . - . ID=Physo138748.4;Parent=Physo138748;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 210546 211150 . - 0 ID=Physo138748;Parent=Physo138748;rank=3 scaffold_66 . exon 210546 211150 . - . ID=Physo138748.3;Parent=Physo138748;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_66 . CDS 211237 211425 . - 0 ID=Physo138748;Parent=Physo138748;rank=2 scaffold_66 . exon 211237 211425 . - . ID=Physo138748.2;Parent=Physo138748;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_66 . CDS 211488 211669 . - 0 ID=Physo138748;Parent=Physo138748;rank=1 scaffold_66 . exon 211488 211669 . - . ID=Physo138748.1;Parent=Physo138748;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 214994 216694 . + . ID=Physo138749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660068;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 214994 216694 . + . ID=Physo138749;Parent=Physo138749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 214994 215048 . + 0 ID=Physo138749;Parent=Physo138749;rank=1 scaffold_66 . exon 214994 215048 . + . ID=Physo138749.1;Parent=Physo138749;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 215120 215639 . + 0 ID=Physo138749;Parent=Physo138749;rank=2 scaffold_66 . exon 215120 215639 . + . ID=Physo138749.2;Parent=Physo138749;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_66 . CDS 215720 216549 . + 0 ID=Physo138749;Parent=Physo138749;rank=3 scaffold_66 . CDS 216642 216694 . + 0 ID=Physo138749;Parent=Physo138749;rank=4 scaffold_66 . repeat_region 216614 216656 . ? . description=trf scaffold_66 . repeat_region 217579 217598 . ? . description=trf scaffold_66 . repeat_region 217579 217692 . + . description=(GA)n scaffold_66 . repeat_region 217596 217692 . ? . description=trf scaffold_66 . exon 215720 216549 . + . ID=Physo138749.3;Parent=Physo138749;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_66 . exon 216642 216694 . + . ID=Physo138749.4;Parent=Physo138749;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 ensembl protein_coding_gene 218748 219497 . + . ID=Physo138750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660069;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 218748 219497 . + . ID=Physo138750;Parent=Physo138750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 218748 219497 . + 0 ID=Physo138750;Parent=Physo138750;rank=1 scaffold_66 . exon 218748 219497 . + . ID=Physo138750.1;Parent=Physo138750;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 220812 227943 . + . ID=Physo138751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660070;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 220812 227943 . + . ID=Physo138751;Parent=Physo138751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 220812 221904 . + 0 ID=Physo138751;Parent=Physo138751;rank=1 scaffold_66 . exon 220812 221904 . + . ID=Physo138751.1;Parent=Physo138751;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 222168 222473 . + 0 ID=Physo138751;Parent=Physo138751;rank=2 scaffold_66 . exon 222168 222473 . + . ID=Physo138751.2;Parent=Physo138751;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 222512 222885 . + 0 ID=Physo138751;Parent=Physo138751;rank=3 scaffold_66 . exon 222512 222885 . + . ID=Physo138751.3;Parent=Physo138751;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 223248 224795 . + 0 ID=Physo138751;Parent=Physo138751;rank=4 scaffold_66 . exon 223248 224795 . + . ID=Physo138751.4;Parent=Physo138751;constitutive=1;rank=4 scaffold_66 . CDS 224915 226135 . + 0 ID=Physo138751;Parent=Physo138751;rank=5 scaffold_66 . exon 224915 226135 . + . ID=Physo138751.5;Parent=Physo138751;constitutive=1;rank=5 scaffold_66 . CDS 226528 226908 . + 0 ID=Physo138751;Parent=Physo138751;rank=6 scaffold_66 . CDS 226945 227437 . + 0 ID=Physo138751;Parent=Physo138751;rank=7 scaffold_66 . CDS 227642 227943 . + 0 ID=Physo138751;Parent=Physo138751;rank=8 scaffold_66 . biological_region 231659 231661 0.999 - . logic_name=eponine scaffold_66 . biological_region 231752 231755 0.999 - . logic_name=eponine scaffold_66 . biological_region 232092 232095 0.999 + . logic_name=eponine scaffold_66 . biological_region 232224 232229 0.999 - . logic_name=eponine scaffold_66 . repeat_region 233060 233084 . ? . description=dust scaffold_66 . biological_region 234283 234289 0.999 + . logic_name=eponine scaffold_66 . biological_region 234301 234305 0.999 + . logic_name=eponine scaffold_66 . biological_region 234409 234409 0.999 - . logic_name=eponine scaffold_66 . biological_region 234925 234927 0.999 + . logic_name=eponine scaffold_66 . exon 226528 226908 . + . ID=Physo138751.6;Parent=Physo138751;constitutive=1;rank=6 scaffold_66 . exon 226945 227437 . + . ID=Physo138751.7;Parent=Physo138751;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_66 . exon 227642 227943 . + . ID=Physo138751.8;Parent=Physo138751;constitutive=1;ensembl_phase=1;rank=8 scaffold_66 ensembl protein_coding_gene 229123 232281 . - . ID=Physo138752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660071;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 229123 232281 . - . ID=Physo138752;Parent=Physo138752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 229123 229324 . - 0 ID=Physo138752;Parent=Physo138752;rank=7 scaffold_66 . exon 229123 229324 . - . ID=Physo138752.7;Parent=Physo138752;constitutive=1;ensembl_phase=2;rank=7 scaffold_66 . CDS 229388 229965 . - 0 ID=Physo138752;Parent=Physo138752;rank=6 scaffold_66 . exon 229388 229965 . - . ID=Physo138752.6;Parent=Physo138752;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_66 . CDS 230100 230279 . - 0 ID=Physo138752;Parent=Physo138752;rank=5 scaffold_66 . exon 230100 230279 . - . ID=Physo138752.5;Parent=Physo138752;constitutive=1;rank=5 scaffold_66 . CDS 230352 230468 . - 0 ID=Physo138752;Parent=Physo138752;rank=4 scaffold_66 . exon 230352 230468 . - . ID=Physo138752.4;Parent=Physo138752;constitutive=1;rank=4 scaffold_66 . CDS 230559 231068 . - 0 ID=Physo138752;Parent=Physo138752;rank=3 scaffold_66 . exon 230559 231068 . - . ID=Physo138752.3;Parent=Physo138752;constitutive=1;rank=3 scaffold_66 . CDS 231141 231375 . - 0 ID=Physo138752;Parent=Physo138752;rank=2 scaffold_66 . exon 231141 231375 . - . ID=Physo138752.2;Parent=Physo138752;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 231623 232281 . - 0 ID=Physo138752;Parent=Physo138752;rank=1 scaffold_66 . exon 231623 232281 . - . ID=Physo138752.1;Parent=Physo138752;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . repeat_region 237233 237271 . ? . description=trf scaffold_66 . repeat_region 238546 238587 . ? . description=trf scaffold_66 . repeat_region 238728 238778 . ? . description=trf scaffold_66 . repeat_region 239494 241034 . ? . description=trf scaffold_66 . repeat_region 242134 250297 . ? . description=trf scaffold_66 ensembl protein_coding_gene 239546 250244 . + . ID=Physo138753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660072;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 239546 250244 . + . ID=Physo138753;Parent=Physo138753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 239546 239585 . + 0 ID=Physo138753;Parent=Physo138753;rank=1 scaffold_66 . exon 239546 239585 . + . ID=Physo138753.1;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 239650 239799 . + 0 ID=Physo138753;Parent=Physo138753;rank=2 scaffold_66 . exon 239650 239799 . + . ID=Physo138753.2;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 239846 240023 . + 0 ID=Physo138753;Parent=Physo138753;rank=3 scaffold_66 . exon 239846 240023 . + . ID=Physo138753.3;Parent=Physo138753;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_66 . CDS 240061 240237 . + 0 ID=Physo138753;Parent=Physo138753;rank=4 scaffold_66 . exon 240061 240237 . + . ID=Physo138753.4;Parent=Physo138753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_66 . CDS 240274 240440 . + 0 ID=Physo138753;Parent=Physo138753;rank=5 scaffold_66 . exon 240274 240440 . + . ID=Physo138753.5;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_66 . CDS 240505 240654 . + 0 ID=Physo138753;Parent=Physo138753;rank=6 scaffold_66 . exon 240505 240654 . + . ID=Physo138753.6;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_66 . CDS 240701 240868 . + 0 ID=Physo138753;Parent=Physo138753;rank=7 scaffold_66 . exon 240701 240868 . + . ID=Physo138753.7;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_66 . CDS 240942 241030 . + 0 ID=Physo138753;Parent=Physo138753;rank=8 scaffold_66 . exon 240942 241030 . + . ID=Physo138753.8;Parent=Physo138753;constitutive=1;ensembl_phase=1;rank=8 scaffold_66 . CDS 242240 242348 . + 0 ID=Physo138753;Parent=Physo138753;rank=9 scaffold_66 . exon 242240 242348 . + . ID=Physo138753.9;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_66 . CDS 242422 242562 . + 0 ID=Physo138753;Parent=Physo138753;rank=10 scaffold_66 . exon 242422 242562 . + . ID=Physo138753.10;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_66 . CDS 242636 242760 . + 0 ID=Physo138753;Parent=Physo138753;rank=11 scaffold_66 . exon 242636 242760 . + . ID=Physo138753.11;Parent=Physo138753;constitutive=1;ensembl_phase=1;rank=11 scaffold_66 . CDS 242882 242990 . + 0 ID=Physo138753;Parent=Physo138753;rank=12 scaffold_66 . exon 242882 242990 . + . ID=Physo138753.12;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_66 . CDS 243064 243188 . + 0 ID=Physo138753;Parent=Physo138753;rank=13 scaffold_66 . exon 243064 243188 . + . ID=Physo138753.13;Parent=Physo138753;constitutive=1;ensembl_phase=1;rank=13 scaffold_66 . CDS 243310 243418 . + 0 ID=Physo138753;Parent=Physo138753;rank=14 scaffold_66 . exon 243310 243418 . + . ID=Physo138753.14;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_66 . CDS 243465 243632 . + 0 ID=Physo138753;Parent=Physo138753;rank=15 scaffold_66 . exon 243465 243632 . + . ID=Physo138753.15;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_66 . CDS 243679 243846 . + 0 ID=Physo138753;Parent=Physo138753;rank=16 scaffold_66 . exon 243679 243846 . + . ID=Physo138753.16;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=16 scaffold_66 . CDS 243893 244060 . + 0 ID=Physo138753;Parent=Physo138753;rank=17 scaffold_66 . exon 243893 244060 . + . ID=Physo138753.17;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=17 scaffold_66 . CDS 244107 244129 . + 0 ID=Physo138753;Parent=Physo138753;rank=18 scaffold_66 . exon 244107 244129 . + . ID=Physo138753.18;Parent=Physo138753;constitutive=1;ensembl_phase=1;rank=18 scaffold_66 . CDS 244220 244274 . + 0 ID=Physo138753;Parent=Physo138753;rank=19 scaffold_66 . exon 244220 244274 . + . ID=Physo138753.19;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;rank=19 scaffold_66 . CDS 244321 244488 . + 0 ID=Physo138753;Parent=Physo138753;rank=20 scaffold_66 . exon 244321 244488 . + . ID=Physo138753.20;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=20 scaffold_66 . CDS 244535 244707 . + 0 ID=Physo138753;Parent=Physo138753;rank=21 scaffold_66 . exon 244535 244707 . + . ID=Physo138753.21;Parent=Physo138753;constitutive=1;ensembl_phase=1;rank=21 scaffold_66 . CDS 244730 244776 . + 0 ID=Physo138753;Parent=Physo138753;rank=22 scaffold_66 . exon 244730 244776 . + . ID=Physo138753.22;Parent=Physo138753;constitutive=1;ensembl_end_phase=2;rank=22 scaffold_66 . CDS 244973 245420 . + 0 ID=Physo138753;Parent=Physo138753;rank=23 scaffold_66 . exon 244973 245420 . + . ID=Physo138753.23;Parent=Physo138753;constitutive=1;ensembl_phase=2;rank=23 scaffold_66 . CDS 245459 245564 . + 0 ID=Physo138753;Parent=Physo138753;rank=24 scaffold_66 . CDS 245611 245816 . + 0 ID=Physo138753;Parent=Physo138753;rank=25 scaffold_66 . CDS 245876 246023 . + 0 ID=Physo138753;Parent=Physo138753;rank=26 scaffold_66 . CDS 246050 246183 . + 0 ID=Physo138753;Parent=Physo138753;rank=27 scaffold_66 . CDS 246289 246490 . + 0 ID=Physo138753;Parent=Physo138753;rank=28 scaffold_66 . CDS 246648 246854 . + 0 ID=Physo138753;Parent=Physo138753;rank=29 scaffold_66 . CDS 246881 247000 . + 0 ID=Physo138753;Parent=Physo138753;rank=30 scaffold_66 . CDS 247068 247214 . + 0 ID=Physo138753;Parent=Physo138753;rank=31 scaffold_66 . CDS 247282 247449 . + 0 ID=Physo138753;Parent=Physo138753;rank=32 scaffold_66 . CDS 247496 247642 . + 0 ID=Physo138753;Parent=Physo138753;rank=33 scaffold_66 . CDS 247710 247856 . + 0 ID=Physo138753;Parent=Physo138753;rank=34 scaffold_66 . CDS 247924 248070 . + 0 ID=Physo138753;Parent=Physo138753;rank=35 scaffold_66 . CDS 248138 248289 . + 0 ID=Physo138753;Parent=Physo138753;rank=36 scaffold_66 . CDS 248350 248398 . + 0 ID=Physo138753;Parent=Physo138753;rank=37 scaffold_66 . CDS 248436 248612 . + 0 ID=Physo138753;Parent=Physo138753;rank=38 scaffold_66 . CDS 248650 248826 . + 0 ID=Physo138753;Parent=Physo138753;rank=39 scaffold_66 . CDS 248864 249160 . + 0 ID=Physo138753;Parent=Physo138753;rank=40 scaffold_66 . CDS 249225 249374 . + 0 ID=Physo138753;Parent=Physo138753;rank=41 scaffold_66 . CDS 249439 249588 . + 0 ID=Physo138753;Parent=Physo138753;rank=42 scaffold_66 . CDS 249635 249802 . + 0 ID=Physo138753;Parent=Physo138753;rank=43 scaffold_66 . CDS 249849 250016 . + 0 ID=Physo138753;Parent=Physo138753;rank=44 scaffold_66 . CDS 250063 250244 . + 0 ID=Physo138753;Parent=Physo138753;rank=45 scaffold_66 . exon 245459 245564 . + . ID=Physo138753.24;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;rank=24 scaffold_66 . exon 245611 245816 . + . ID=Physo138753.25;Parent=Physo138753;constitutive=1;ensembl_phase=1;rank=25 scaffold_66 . exon 245876 246023 . + . ID=Physo138753.26;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;rank=26 scaffold_66 . exon 246050 246183 . + . ID=Physo138753.27;Parent=Physo138753;constitutive=1;ensembl_phase=1;rank=27 scaffold_66 . exon 246289 246490 . + . ID=Physo138753.28;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;rank=28 scaffold_66 . exon 246648 246854 . + . ID=Physo138753.29;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=29 scaffold_66 . exon 246881 247000 . + . ID=Physo138753.30;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=30 scaffold_66 . exon 247068 247214 . + . ID=Physo138753.31;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=31 scaffold_66 . exon 247282 247449 . + . ID=Physo138753.32;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=32 scaffold_66 . exon 247496 247642 . + . ID=Physo138753.33;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=33 scaffold_66 . exon 247710 247856 . + . ID=Physo138753.34;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=34 scaffold_66 . exon 247924 248070 . + . ID=Physo138753.35;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=35 scaffold_66 . exon 248138 248289 . + . ID=Physo138753.36;Parent=Physo138753;constitutive=1;ensembl_phase=1;rank=36 scaffold_66 . exon 248350 248398 . + . ID=Physo138753.37;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;rank=37 scaffold_66 . exon 248436 248612 . + . ID=Physo138753.38;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=38 scaffold_66 . exon 248650 248826 . + . ID=Physo138753.39;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=39 scaffold_66 . exon 248864 249160 . + . ID=Physo138753.40;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=40 scaffold_66 . exon 249225 249374 . + . ID=Physo138753.41;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=41 scaffold_66 . exon 249439 249588 . + . ID=Physo138753.42;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=42 scaffold_66 . exon 249635 249802 . + . ID=Physo138753.43;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=43 scaffold_66 . exon 249849 250016 . + . ID=Physo138753.44;Parent=Physo138753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=44 scaffold_66 . exon 250063 250244 . + . ID=Physo138753.45;Parent=Physo138753;constitutive=1;ensembl_phase=1;rank=45 scaffold_66 . repeat_region 259002 259031 . ? . description=trf scaffold_66 . repeat_region 259887 259894 . ? . description=dust scaffold_66 . repeat_region 260085 260096 . ? . description=dust scaffold_66 . repeat_region 261133 261156 . ? . description=dust scaffold_66 . repeat_region 261133 261156 . ? . description=trf scaffold_66 . repeat_region 263456 263464 . ? . description=dust scaffold_66 ensembl protein_coding_gene 257754 258657 . - . ID=Physo138754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660073;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 257754 258657 . - . ID=Physo138754;Parent=Physo138754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 257754 258526 . - 0 ID=Physo138754;Parent=Physo138754;rank=2 scaffold_66 . exon 257754 258526 . - . ID=Physo138754.2;Parent=Physo138754;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 258546 258657 . - 0 ID=Physo138754;Parent=Physo138754;rank=1 scaffold_66 . exon 258546 258657 . - . ID=Physo138754.1;Parent=Physo138754;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 ensembl protein_coding_gene 261955 262811 . - . ID=Physo138755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660074;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 261955 262811 . - . ID=Physo138755;Parent=Physo138755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 261955 262040 . - 0 ID=Physo138755;Parent=Physo138755;rank=2 scaffold_66 . exon 261955 262040 . - . ID=Physo138755.2;Parent=Physo138755;constitutive=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 262457 262811 . - 0 ID=Physo138755;Parent=Physo138755;rank=1 scaffold_66 . exon 262457 262811 . - . ID=Physo138755.1;Parent=Physo138755;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . biological_region 267776 267776 0.999 - . logic_name=eponine scaffold_66 . biological_region 268140 268141 0.999 - . logic_name=eponine scaffold_66 . biological_region 268194 268197 0.999 + . logic_name=eponine scaffold_66 . biological_region 269007 269010 0.999 + . logic_name=eponine scaffold_66 . biological_region 269748 269750 0.999 + . logic_name=eponine scaffold_66 . biological_region 271688 271688 0.999 + . logic_name=eponine scaffold_66 . biological_region 273490 273491 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 267417 271138 . + . ID=Physo138756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660075;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 267417 271138 . + . ID=Physo138756;Parent=Physo138756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 267417 269588 . + 0 ID=Physo138756;Parent=Physo138756;rank=1 scaffold_66 . exon 267417 269588 . + . ID=Physo138756.1;Parent=Physo138756;constitutive=1;rank=1 scaffold_66 . CDS 269742 270270 . + 0 ID=Physo138756;Parent=Physo138756;rank=2 scaffold_66 . exon 269742 270270 . + . ID=Physo138756.2;Parent=Physo138756;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . CDS 270347 270371 . + 0 ID=Physo138756;Parent=Physo138756;rank=3 scaffold_66 . exon 270347 270371 . + . ID=Physo138756.3;Parent=Physo138756;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_66 . CDS 270448 270574 . + 0 ID=Physo138756;Parent=Physo138756;rank=4 scaffold_66 . exon 270448 270574 . + . ID=Physo138756.4;Parent=Physo138756;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 270640 270705 . + 0 ID=Physo138756;Parent=Physo138756;rank=5 scaffold_66 . exon 270640 270705 . + . ID=Physo138756.5;Parent=Physo138756;constitutive=1;rank=5 scaffold_66 . CDS 270786 270836 . + 0 ID=Physo138756;Parent=Physo138756;rank=6 scaffold_66 . exon 270786 270836 . + . ID=Physo138756.6;Parent=Physo138756;constitutive=1;rank=6 scaffold_66 . CDS 270911 270957 . + 0 ID=Physo138756;Parent=Physo138756;rank=7 scaffold_66 . exon 270911 270957 . + . ID=Physo138756.7;Parent=Physo138756;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_66 . CDS 271030 271138 . + 0 ID=Physo138756;Parent=Physo138756;rank=8 scaffold_66 . exon 271030 271138 . + . ID=Physo138756.8;Parent=Physo138756;constitutive=1;ensembl_phase=2;rank=8 scaffold_66 ensembl protein_coding_gene 271214 272652 . - . ID=Physo138757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660076;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 271214 272652 . - . ID=Physo138757;Parent=Physo138757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 271214 272652 . - . ID=Physo138757.1;Parent=Physo138757;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_66 . CDS 271327 272592 . - 0 ID=Physo138757;Parent=Physo138757;rank=1 scaffold_66 ensembl protein_coding_gene 273803 274755 . - . ID=Physo138758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660077;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 273803 274755 . - . ID=Physo138758;Parent=Physo138758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 273803 274189 . - 0 ID=Physo138758;Parent=Physo138758;rank=2 scaffold_66 . exon 273803 274189 . - . ID=Physo138758.2;Parent=Physo138758;constitutive=1;rank=2 scaffold_66 . CDS 274225 274755 . - 0 ID=Physo138758;Parent=Physo138758;rank=1 scaffold_66 . exon 274225 274755 . - . ID=Physo138758.1;Parent=Physo138758;constitutive=1;rank=1 scaffold_66 . repeat_region 276820 276836 . ? . description=dust scaffold_66 . repeat_region 277754 277762 . ? . description=dust scaffold_66 . repeat_region 280449 280550 . ? . description=trf scaffold_66 . repeat_region 280500 280606 . ? . description=trf scaffold_66 ensembl protein_coding_gene 275320 276295 . - . ID=Physo138759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660078;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 275320 276295 . - . ID=Physo138759;Parent=Physo138759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 275320 275460 . - 0 ID=Physo138759;Parent=Physo138759;rank=5 scaffold_66 . exon 275320 275460 . - . ID=Physo138759.5;Parent=Physo138759;constitutive=1;rank=5 scaffold_66 . CDS 275526 275586 . - 0 ID=Physo138759;Parent=Physo138759;rank=4 scaffold_66 . exon 275526 275586 . - . ID=Physo138759.4;Parent=Physo138759;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 275666 275770 . - 0 ID=Physo138759;Parent=Physo138759;rank=3 scaffold_66 . exon 275666 275770 . - . ID=Physo138759.3;Parent=Physo138759;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_66 . CDS 275836 275979 . - 0 ID=Physo138759;Parent=Physo138759;rank=2 scaffold_66 . exon 275836 275979 . - . ID=Physo138759.2;Parent=Physo138759;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_66 . CDS 276231 276295 . - 0 ID=Physo138759;Parent=Physo138759;rank=1 scaffold_66 . exon 276231 276295 . - . ID=Physo138759.1;Parent=Physo138759;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 276843 277478 . - . ID=Physo138760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660079;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 276843 277478 . - . ID=Physo138760;Parent=Physo138760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 276843 277478 . - 0 ID=Physo138760;Parent=Physo138760;rank=1 scaffold_66 . exon 276843 277478 . - . ID=Physo138760.1;Parent=Physo138760;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 280038 280527 . - . ID=Physo138761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660080;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 280038 280527 . - . ID=Physo138761;Parent=Physo138761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 280038 280298 . - . ID=Physo138761.2;Parent=Physo138761;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_66 . CDS 280161 280298 . - 0 ID=Physo138761;Parent=Physo138761;rank=2 scaffold_66 . CDS 280318 280527 . - 0 ID=Physo138761;Parent=Physo138761;rank=1 scaffold_66 . exon 280318 280527 . - . ID=Physo138761.1;Parent=Physo138761;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 282829 284908 . - . ID=Physo138762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660081;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 282829 284908 . - . ID=Physo138762;Parent=Physo138762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 282829 282881 . - 0 ID=Physo138762;Parent=Physo138762;rank=3 scaffold_66 . exon 282829 282881 . - . ID=Physo138762.3;Parent=Physo138762;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 283154 283343 . - 0 ID=Physo138762;Parent=Physo138762;rank=2 scaffold_66 . exon 283154 283343 . - . ID=Physo138762.2;Parent=Physo138762;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . CDS 283547 284908 . - 0 ID=Physo138762;Parent=Physo138762;rank=1 scaffold_66 . exon 283547 284908 . - . ID=Physo138762.1;Parent=Physo138762;constitutive=1;rank=1 scaffold_66 . biological_region 289188 289190 0.999 - . logic_name=eponine scaffold_66 . biological_region 289213 289220 0.999 - . logic_name=eponine scaffold_66 . biological_region 289309 289311 0.999 + . logic_name=eponine scaffold_66 . repeat_region 291955 292258 . - . description=GypsyPi-1c_LTR scaffold_66 . repeat_region 292259 292581 . - . description=GypsyPi-1c_I-int scaffold_66 . biological_region 292512 292515 0.999 + . logic_name=eponine scaffold_66 . biological_region 292655 292656 0.999 - . logic_name=eponine scaffold_66 . biological_region 292707 292714 0.999 + . logic_name=eponine scaffold_66 . biological_region 293072 293072 0.999 + . logic_name=eponine scaffold_66 . repeat_region 293150 295946 . - . description=GypsyPi-1c_I-int scaffold_66 ensembl protein_coding_gene 285584 285910 . + . ID=Physo138763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660082;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 285584 285910 . + . ID=Physo138763;Parent=Physo138763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 285584 285910 . + 0 ID=Physo138763;Parent=Physo138763;rank=1 scaffold_66 . exon 285584 285910 . + . ID=Physo138763.1;Parent=Physo138763;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 286624 287731 . + . ID=Physo138764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660083;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 286624 287731 . + . ID=Physo138764;Parent=Physo138764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 286624 286682 . + 0 ID=Physo138764;Parent=Physo138764;rank=1 scaffold_66 . exon 286624 286682 . + . ID=Physo138764.1;Parent=Physo138764;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 286744 287104 . + 0 ID=Physo138764;Parent=Physo138764;rank=2 scaffold_66 . exon 286744 287104 . + . ID=Physo138764.2;Parent=Physo138764;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 287174 287389 . + 0 ID=Physo138764;Parent=Physo138764;rank=3 scaffold_66 . exon 287174 287389 . + . ID=Physo138764.3;Parent=Physo138764;constitutive=1;rank=3 scaffold_66 . CDS 287534 287731 . + 0 ID=Physo138764;Parent=Physo138764;rank=4 scaffold_66 . exon 287534 287731 . + . ID=Physo138764.4;Parent=Physo138764;constitutive=1;rank=4 scaffold_66 ensembl protein_coding_gene 292352 294621 . + . ID=Physo138765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660084;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 292352 294621 . + . ID=Physo138765;Parent=Physo138765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 292352 293850 . + 0 ID=Physo138765;Parent=Physo138765;rank=1 scaffold_66 . exon 292352 293850 . + . ID=Physo138765.1;Parent=Physo138765;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 294051 294621 . + 0 ID=Physo138765;Parent=Physo138765;rank=2 scaffold_66 . exon 294051 294621 . + . ID=Physo138765.2;Parent=Physo138765;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . repeat_region 296081 296126 . ? . description=dust scaffold_66 . repeat_region 296245 296252 . ? . description=dust scaffold_66 . repeat_region 297270 297358 . ? . description=trf scaffold_66 ensembl protein_coding_gene 296715 297225 . + . ID=Physo109167;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_660009;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 296715 297225 . + . ID=Physo109167;Parent=Physo109167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 296715 297083 . + . ID=Physo109167.1;Parent=Physo109167;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_66 . CDS 296716 297083 . + 0 ID=Physo109167;Parent=Physo109167;rank=1 scaffold_66 . CDS 297199 297223 . + 0 ID=Physo109167;Parent=Physo109167;rank=2 scaffold_66 . exon 297199 297225 . + . ID=Physo109167.2;Parent=Physo109167;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_66 ensembl protein_coding_gene 294934 296511 . - . ID=Physo138766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660085;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 294934 296511 . - . ID=Physo138766;Parent=Physo138766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 294934 294942 . - 0 ID=Physo138766;Parent=Physo138766;rank=3 scaffold_66 . exon 294934 294942 . - . ID=Physo138766.3;Parent=Physo138766;constitutive=1;rank=3 scaffold_66 . CDS 294989 296060 . - 0 ID=Physo138766;Parent=Physo138766;rank=2 scaffold_66 . exon 294989 296060 . - . ID=Physo138766.2;Parent=Physo138766;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 296384 296511 . - 0 ID=Physo138766;Parent=Physo138766;rank=1 scaffold_66 . exon 296384 296511 . - . ID=Physo138766.1;Parent=Physo138766;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 297755 298657 . - . ID=Physo138768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660087;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 297755 298657 . - . ID=Physo138768;Parent=Physo138768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 297755 298657 . - 0 ID=Physo138768;Parent=Physo138768;rank=1 scaffold_66 . exon 297755 298657 . - . ID=Physo138768.1;Parent=Physo138768;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 299170 300137 . - . ID=Physo138769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660088;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 299170 300137 . - . ID=Physo138769;Parent=Physo138769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 299170 299611 . - 0 ID=Physo138769;Parent=Physo138769;rank=2 scaffold_66 . exon 299170 299611 . - . ID=Physo138769.2;Parent=Physo138769;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 299695 300137 . - 0 ID=Physo138769;Parent=Physo138769;rank=1 scaffold_66 . exon 299695 300137 . - . ID=Physo138769.1;Parent=Physo138769;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 300329 301474 . + . ID=Physo138770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660089;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 300329 301474 . + . ID=Physo138770;Parent=Physo138770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 300329 301474 . + 0 ID=Physo138770;Parent=Physo138770;rank=1 scaffold_66 . exon 300329 301474 . + . ID=Physo138770.1;Parent=Physo138770;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 301532 302676 . - . ID=Physo138771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660090;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 301532 302676 . - . ID=Physo138771;Parent=Physo138771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 301532 301641 . - 0 ID=Physo138771;Parent=Physo138771;rank=3 scaffold_66 . exon 301532 301641 . - . ID=Physo138771.3;Parent=Physo138771;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 301749 302392 . - 0 ID=Physo138771;Parent=Physo138771;rank=2 scaffold_66 . exon 301749 302392 . - . ID=Physo138771.2;Parent=Physo138771;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 302468 302676 . - 0 ID=Physo138771;Parent=Physo138771;rank=1 scaffold_66 . exon 302468 302676 . - . ID=Physo138771.1;Parent=Physo138771;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . biological_region 303961 303962 0.999 - . logic_name=eponine scaffold_66 . biological_region 304150 304151 0.999 + . logic_name=eponine scaffold_66 . biological_region 304339 304339 0.999 + . logic_name=eponine scaffold_66 . biological_region 304740 304742 0.999 - . logic_name=eponine scaffold_66 . biological_region 304850 304852 0.999 + . logic_name=eponine scaffold_66 . biological_region 305260 305262 0.999 - . logic_name=eponine scaffold_66 . biological_region 308733 308737 0.999 - . logic_name=eponine scaffold_66 . biological_region 308962 308963 0.999 + . logic_name=eponine scaffold_66 . biological_region 308976 308984 0.999 + . logic_name=eponine scaffold_66 . biological_region 309038 309045 0.999 - . logic_name=eponine scaffold_66 . biological_region 309365 309368 0.999 + . logic_name=eponine scaffold_66 . biological_region 309466 309470 0.999 + . logic_name=eponine scaffold_66 . biological_region 310404 310408 0.999 + . logic_name=eponine scaffold_66 . biological_region 310437 310437 0.999 + . logic_name=eponine scaffold_66 . biological_region 310451 310455 0.999 + . logic_name=eponine scaffold_66 . biological_region 310493 310496 0.999 - . logic_name=eponine scaffold_66 . biological_region 310521 310524 0.999 + . logic_name=eponine scaffold_66 . biological_region 310590 310595 0.999 + . logic_name=eponine scaffold_66 . biological_region 310645 310651 0.999 + . logic_name=eponine scaffold_66 . biological_region 310651 310658 0.999 - . logic_name=eponine scaffold_66 . biological_region 310670 310674 0.999 + . logic_name=eponine scaffold_66 . biological_region 310717 310718 0.999 - . logic_name=eponine scaffold_66 . biological_region 311731 311732 0.999 + . logic_name=eponine scaffold_66 . biological_region 312331 312335 0.999 + . logic_name=eponine scaffold_66 . biological_region 312554 312557 0.999 + . logic_name=eponine scaffold_66 . biological_region 312938 312941 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 304098 307579 . + . ID=Physo138772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660091;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 304098 307579 . + . ID=Physo138772;Parent=Physo138772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 304098 307399 . + 0 ID=Physo138772;Parent=Physo138772;rank=1 scaffold_66 . exon 304098 307399 . + . ID=Physo138772.1;Parent=Physo138772;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 . CDS 307477 307579 . + 0 ID=Physo138772;Parent=Physo138772;rank=2 scaffold_66 . exon 307477 307579 . + . ID=Physo138772.2;Parent=Physo138772;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 ensembl protein_coding_gene 307956 309053 . - . ID=Physo138773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660092;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 307956 309053 . - . ID=Physo138773;Parent=Physo138773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 307956 309053 . - 0 ID=Physo138773;Parent=Physo138773;rank=1 scaffold_66 . exon 307956 309053 . - . ID=Physo138773.1;Parent=Physo138773;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 310354 312018 . + . ID=Physo138774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660093;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 310354 312018 . + . ID=Physo138774;Parent=Physo138774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 310354 312018 . + 0 ID=Physo138774;Parent=Physo138774;rank=1 scaffold_66 . exon 310354 312018 . + . ID=Physo138774.1;Parent=Physo138774;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 312959 313504 . - . ID=Physo138775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660094;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 312959 313504 . - . ID=Physo138775;Parent=Physo138775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 312959 313504 . - 0 ID=Physo138775;Parent=Physo138775;rank=1 scaffold_66 . exon 312959 313504 . - . ID=Physo138775.1;Parent=Physo138775;constitutive=1;rank=1 scaffold_66 . repeat_region 314700 314708 . ? . description=dust scaffold_66 . repeat_region 321747 321800 . ? . description=trf scaffold_66 ensembl protein_coding_gene 314062 317384 . + . ID=Physo138776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660095;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 314062 317384 . + . ID=Physo138776;Parent=Physo138776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 314062 314176 . + 0 ID=Physo138776;Parent=Physo138776;rank=1 scaffold_66 . exon 314062 314176 . + . ID=Physo138776.1;Parent=Physo138776;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 314244 314354 . + 0 ID=Physo138776;Parent=Physo138776;rank=2 scaffold_66 . exon 314244 314354 . + . ID=Physo138776.2;Parent=Physo138776;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 314434 314520 . + 0 ID=Physo138776;Parent=Physo138776;rank=3 scaffold_66 . exon 314434 314520 . + . ID=Physo138776.3;Parent=Physo138776;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 314583 314689 . + 0 ID=Physo138776;Parent=Physo138776;rank=4 scaffold_66 . exon 314583 314689 . + . ID=Physo138776.4;Parent=Physo138776;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 314763 315444 . + 0 ID=Physo138776;Parent=Physo138776;rank=5 scaffold_66 . exon 314763 315444 . + . ID=Physo138776.5;Parent=Physo138776;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_66 . CDS 315855 316337 . + 0 ID=Physo138776;Parent=Physo138776;rank=6 scaffold_66 . exon 315855 316337 . + . ID=Physo138776.6;Parent=Physo138776;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_66 . CDS 316449 317242 . + 0 ID=Physo138776;Parent=Physo138776;rank=7 scaffold_66 . exon 316449 317242 . + . ID=Physo138776.7;Parent=Physo138776;constitutive=1;ensembl_phase=1;rank=7 scaffold_66 . CDS 317331 317384 . + 0 ID=Physo138776;Parent=Physo138776;rank=8 scaffold_66 . exon 317331 317384 . + . ID=Physo138776.8;Parent=Physo138776;constitutive=1;rank=8 scaffold_66 ensembl protein_coding_gene 320591 321278 . - . ID=Physo138777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660096;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 320591 321278 . - . ID=Physo138777;Parent=Physo138777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 320591 320602 . - 0 ID=Physo138777;Parent=Physo138777;rank=2 scaffold_66 . exon 320591 320602 . - . ID=Physo138777.2;Parent=Physo138777;constitutive=1;rank=2 scaffold_66 . CDS 320646 321278 . - 0 ID=Physo138777;Parent=Physo138777;rank=1 scaffold_66 . exon 320646 321278 . - . ID=Physo138777.1;Parent=Physo138777;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 321401 322899 . + . ID=Physo157886;biotype=protein_coding;external_name=C_scaffold_66000016;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 321401 322899 . + . ID=Physo157886;Parent=Physo157886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 321401 321457 . + 0 ID=Physo157886;Parent=Physo157886;rank=1 scaffold_66 . exon 321401 321457 . + . ID=Physo157886.1;Parent=Physo157886;constitutive=1;rank=1 scaffold_66 . CDS 321547 321771 . + 0 ID=Physo157886;Parent=Physo157886;rank=2 scaffold_66 . exon 321547 321771 . + . ID=Physo157886.2;Parent=Physo157886;constitutive=1;rank=2 scaffold_66 . CDS 321838 322093 . + 0 ID=Physo157886;Parent=Physo157886;rank=3 scaffold_66 . exon 321838 322093 . + . ID=Physo157886.3;Parent=Physo157886;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_66 . CDS 322161 322255 . + 0 ID=Physo157886;Parent=Physo157886;rank=4 scaffold_66 . exon 322161 322255 . + . ID=Physo157886.4;Parent=Physo157886;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 322327 322899 . + 0 ID=Physo157886;Parent=Physo157886;rank=5 scaffold_66 . exon 322327 322899 . + . ID=Physo157886.5;Parent=Physo157886;constitutive=1;rank=5 scaffold_66 ensembl protein_coding_gene 322972 323701 . - . ID=Physo157887;biotype=protein_coding;external_name=C_scaffold_66000017;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 322972 323701 . - . ID=Physo157887;Parent=Physo157887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 322972 323072 . - 0 ID=Physo157887;Parent=Physo157887;rank=4 scaffold_66 . exon 322972 323072 . - . ID=Physo157887.4;Parent=Physo157887;constitutive=1;ensembl_phase=1;rank=4 scaffold_66 . CDS 323140 323209 . - 0 ID=Physo157887;Parent=Physo157887;rank=3 scaffold_66 . exon 323140 323209 . - . ID=Physo157887.3;Parent=Physo157887;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_66 . CDS 323285 323344 . - 0 ID=Physo157887;Parent=Physo157887;rank=2 scaffold_66 . exon 323285 323344 . - . ID=Physo157887.2;Parent=Physo157887;constitutive=1;rank=2 scaffold_66 . CDS 323453 323701 . - 0 ID=Physo157887;Parent=Physo157887;rank=1 scaffold_66 . exon 323453 323701 . - . ID=Physo157887.1;Parent=Physo157887;constitutive=1;rank=1 scaffold_66 . biological_region 327583 327584 0.999 - . logic_name=eponine scaffold_66 . biological_region 328555 328558 0.999 - . logic_name=eponine scaffold_66 . biological_region 331705 331707 0.999 + . logic_name=eponine scaffold_66 . biological_region 332700 332703 0.999 - . logic_name=eponine scaffold_66 . biological_region 332801 332801 0.999 - . logic_name=eponine scaffold_66 ensembl protein_coding_gene 327089 327777 . - . ID=Physo109168;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_660010;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 327089 327777 . - . ID=Physo109168;Parent=Physo109168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 327089 327777 . - . ID=Physo109168.1;Parent=Physo109168;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_66 . CDS 327310 327720 . - 0 ID=Physo109168;Parent=Physo109168;rank=1 scaffold_66 ensembl protein_coding_gene 323990 326099 . - . ID=Physo138780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660099;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 323990 326099 . - . ID=Physo138780;Parent=Physo138780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 323990 324973 . - 0 ID=Physo138780;Parent=Physo138780;rank=6 scaffold_66 . exon 323990 324973 . - . ID=Physo138780.6;Parent=Physo138780;constitutive=1;rank=6 scaffold_66 . CDS 325050 325172 . - 0 ID=Physo138780;Parent=Physo138780;rank=5 scaffold_66 . exon 325050 325172 . - . ID=Physo138780.5;Parent=Physo138780;constitutive=1;rank=5 scaffold_66 . CDS 325242 325353 . - 0 ID=Physo138780;Parent=Physo138780;rank=4 scaffold_66 . exon 325242 325353 . - . ID=Physo138780.4;Parent=Physo138780;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 . CDS 325429 325490 . - 0 ID=Physo138780;Parent=Physo138780;rank=3 scaffold_66 . exon 325429 325490 . - . ID=Physo138780.3;Parent=Physo138780;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_66 . CDS 325563 325917 . - 0 ID=Physo138780;Parent=Physo138780;rank=2 scaffold_66 . exon 325563 325917 . - . ID=Physo138780.2;Parent=Physo138780;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 326053 326099 . - 0 ID=Physo138780;Parent=Physo138780;rank=1 scaffold_66 . exon 326053 326099 . - . ID=Physo138780.1;Parent=Physo138780;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 326245 326832 . + . ID=Physo138781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660100;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 326245 326832 . + . ID=Physo138781;Parent=Physo138781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 326245 326371 . + 0 ID=Physo138781;Parent=Physo138781;rank=1 scaffold_66 . exon 326245 326371 . + . ID=Physo138781.1;Parent=Physo138781;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 326435 326551 . + 0 ID=Physo138781;Parent=Physo138781;rank=2 scaffold_66 . exon 326435 326551 . + . ID=Physo138781.2;Parent=Physo138781;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 326572 326686 . + 0 ID=Physo138781;Parent=Physo138781;rank=3 scaffold_66 . exon 326572 326686 . + . ID=Physo138781.3;Parent=Physo138781;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_66 . CDS 326748 326832 . + 0 ID=Physo138781;Parent=Physo138781;rank=4 scaffold_66 . exon 326748 326832 . + . ID=Physo138781.4;Parent=Physo138781;constitutive=1;ensembl_phase=2;rank=4 scaffold_66 ensembl protein_coding_gene 329016 330004 . - . ID=Physo138783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660102;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 329016 330004 . - . ID=Physo138783;Parent=Physo138783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 329016 329274 . - 0 ID=Physo138783;Parent=Physo138783;rank=2 scaffold_66 . exon 329016 329274 . - . ID=Physo138783.2;Parent=Physo138783;constitutive=1;ensembl_phase=2;rank=2 scaffold_66 . CDS 329295 330004 . - 0 ID=Physo138783;Parent=Physo138783;rank=1 scaffold_66 . exon 329295 330004 . - . ID=Physo138783.1;Parent=Physo138783;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_66 ensembl protein_coding_gene 331671 334106 . - . ID=Physo138784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660103;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 331671 334106 . - . ID=Physo138784;Parent=Physo138784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 331671 332477 . - 0 ID=Physo138784;Parent=Physo138784;rank=6 scaffold_66 . exon 331671 332477 . - . ID=Physo138784.6;Parent=Physo138784;constitutive=1;rank=6 scaffold_66 . CDS 332547 333376 . - 0 ID=Physo138784;Parent=Physo138784;rank=5 scaffold_66 . exon 332547 333376 . - . ID=Physo138784.5;Parent=Physo138784;constitutive=1;ensembl_phase=1;rank=5 scaffold_66 . CDS 333466 333530 . - 0 ID=Physo138784;Parent=Physo138784;rank=4 scaffold_66 . CDS 333623 333810 . - 0 ID=Physo138784;Parent=Physo138784;rank=3 scaffold_66 . CDS 333891 333959 . - 0 ID=Physo138784;Parent=Physo138784;rank=2 scaffold_66 . CDS 334044 334106 . - 0 ID=Physo138784;Parent=Physo138784;rank=1 scaffold_66 . repeat_region 333439 333447 . ? . description=dust scaffold_66 . repeat_region 336288 336553 . ? . description=trf scaffold_66 . repeat_region 336290 336553 . ? . description=trf scaffold_66 . repeat_region 336401 336685 . ? . description=trf scaffold_66 . repeat_region 336416 336453 . ? . description=trf scaffold_66 . repeat_region 336499 336537 . ? . description=trf scaffold_66 . repeat_region 336499 336639 . ? . description=trf scaffold_66 . repeat_region 336542 336598 . ? . description=trf scaffold_66 . repeat_region 336569 336685 . ? . description=trf scaffold_66 . repeat_region 336679 336793 . ? . description=trf scaffold_66 . repeat_region 341707 341842 . ? . description=trf scaffold_66 . repeat_region 341718 341870 . ? . description=trf scaffold_66 . repeat_region 341983 342118 . ? . description=trf scaffold_66 ensembl protein_coding_gene 338154 338864 . + . ID=Physo119627;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BZ1];external_name=EGL12-H;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 338154 338864 . + . ID=Physo119627;Parent=Physo119627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 338154 338864 . + . ID=Physo119627.1;Parent=Physo119627;constitutive=1;ensembl_phase=-1;rank=1 scaffold_66 . CDS 338172 338864 . + 0 ID=Physo119627;Parent=Physo119627;rank=1 scaffold_66 . exon 333466 333530 . - . ID=Physo138784.4;Parent=Physo138784;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_66 . exon 333623 333810 . - . ID=Physo138784.3;Parent=Physo138784;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_66 . exon 333891 333959 . - . ID=Physo138784.2;Parent=Physo138784;constitutive=1;rank=2 scaffold_66 . exon 334044 334106 . - . ID=Physo138784.1;Parent=Physo138784;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 336023 336853 . + . ID=Physo138785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660104;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 336023 336853 . + . ID=Physo138785;Parent=Physo138785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 336023 336853 . + 0 ID=Physo138785;Parent=Physo138785;rank=1 scaffold_66 . exon 336023 336853 . + . ID=Physo138785.1;Parent=Physo138785;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 340944 342224 . + . ID=Physo138787;biotype=protein_coding;description=Cell 12A endoglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q30BZ0];external_name=EGL12-I;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 340944 342224 . + . ID=Physo138787;Parent=Physo138787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 340944 342224 . + 0 ID=Physo138787;Parent=Physo138787;rank=1 scaffold_66 . exon 340944 342224 . + . ID=Physo138787.1;Parent=Physo138787;constitutive=1;rank=1 scaffold_66 . biological_region 343101 343103 0.999 + . logic_name=eponine scaffold_66 . biological_region 343790 343792 0.999 - . logic_name=eponine scaffold_66 . biological_region 344989 344994 0.999 + . logic_name=eponine scaffold_66 . biological_region 345031 345033 0.999 - . logic_name=eponine scaffold_66 . biological_region 345087 345091 0.999 + . logic_name=eponine scaffold_66 . biological_region 345169 345172 0.999 - . logic_name=eponine scaffold_66 . biological_region 345181 345184 0.999 - . logic_name=eponine scaffold_66 . biological_region 345225 345231 0.999 - . logic_name=eponine scaffold_66 . biological_region 345778 345778 0.999 - . logic_name=eponine scaffold_66 . biological_region 345849 345851 0.999 - . logic_name=eponine scaffold_66 . biological_region 346439 346440 0.999 + . logic_name=eponine scaffold_66 . biological_region 351536 351540 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 348541 349440 . - . ID=Physo119629;biotype=protein_coding;external_name=estExt_Genewise1.C_660038;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 348541 349440 . - . ID=Physo119629;Parent=Physo119629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 348541 349440 . - 0 ID=Physo119629;Parent=Physo119629;rank=1 scaffold_66 . exon 348541 349440 . - . ID=Physo119629.1;Parent=Physo119629;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 343972 346683 . + . ID=Physo138788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660107;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 343972 346683 . + . ID=Physo138788;Parent=Physo138788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 343972 346683 . + 0 ID=Physo138788;Parent=Physo138788;rank=1 scaffold_66 . exon 343972 346683 . + . ID=Physo138788.1;Parent=Physo138788;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 349799 354466 . + . ID=Physo138790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660109;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 349799 354466 . + . ID=Physo138790;Parent=Physo138790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 349799 351121 . + 0 ID=Physo138790;Parent=Physo138790;rank=1 scaffold_66 . exon 349799 351121 . + . ID=Physo138790.1;Parent=Physo138790;constitutive=1;rank=1 scaffold_66 . CDS 351263 351351 . + 0 ID=Physo138790;Parent=Physo138790;rank=2 scaffold_66 . exon 351263 351351 . + . ID=Physo138790.2;Parent=Physo138790;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 351415 354466 . + 0 ID=Physo138790;Parent=Physo138790;rank=3 scaffold_66 . exon 351415 354466 . + . ID=Physo138790.3;Parent=Physo138790;constitutive=1;ensembl_phase=2;rank=3 scaffold_66 . repeat_region 357478 357485 . ? . description=dust scaffold_66 ensembl protein_coding_gene 354548 356372 . - . ID=Physo138791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660110;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 354548 356372 . - . ID=Physo138791;Parent=Physo138791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 354548 355386 . - . ID=Physo138791.4;Parent=Physo138791;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_66 . CDS 354807 355386 . - 0 ID=Physo138791;Parent=Physo138791;rank=4 scaffold_66 . CDS 355461 355583 . - 0 ID=Physo138791;Parent=Physo138791;rank=3 scaffold_66 . exon 355461 355583 . - . ID=Physo138791.3;Parent=Physo138791;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_66 . CDS 355659 355705 . - 0 ID=Physo138791;Parent=Physo138791;rank=2 scaffold_66 . exon 355659 355705 . - . ID=Physo138791.2;Parent=Physo138791;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 355830 356372 . - 0 ID=Physo138791;Parent=Physo138791;rank=1 scaffold_66 . exon 355830 356372 . - . ID=Physo138791.1;Parent=Physo138791;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 357810 359575 . - . ID=Physo138792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660111;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 357810 359575 . - . ID=Physo138792;Parent=Physo138792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 357810 358833 . - . ID=Physo138792.2;Parent=Physo138792;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_66 . CDS 357992 358833 . - 0 ID=Physo138792;Parent=Physo138792;rank=2 scaffold_66 . CDS 358989 359388 . - 0 ID=Physo138792;Parent=Physo138792;rank=1 scaffold_66 . exon 358989 359575 . - . ID=Physo138792.1;Parent=Physo138792;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_66 ensembl protein_coding_gene 361199 361982 . - . ID=Physo138793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660112;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 361199 361982 . - . ID=Physo138793;Parent=Physo138793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . exon 361199 361466 . - . ID=Physo138793.4;Parent=Physo138793;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_66 . CDS 361238 361466 . - 0 ID=Physo138793;Parent=Physo138793;rank=4 scaffold_66 . CDS 361536 361763 . - 0 ID=Physo138793;Parent=Physo138793;rank=3 scaffold_66 . exon 361536 361763 . - . ID=Physo138793.3;Parent=Physo138793;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_66 . CDS 361794 361933 . - 0 ID=Physo138793;Parent=Physo138793;rank=2 scaffold_66 . exon 361794 361933 . - . ID=Physo138793.2;Parent=Physo138793;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_66 . CDS 361962 361982 . - 0 ID=Physo138793;Parent=Physo138793;rank=1 scaffold_66 . exon 361962 361982 . - . ID=Physo138793.1;Parent=Physo138793;constitutive=1;rank=1 scaffold_66 . biological_region 364535 364539 0.999 + . logic_name=eponine scaffold_66 . biological_region 364782 364786 0.999 - . logic_name=eponine scaffold_66 . biological_region 369691 369693 0.999 + . logic_name=eponine scaffold_66 ensembl protein_coding_gene 364491 366947 . + . ID=Physo138794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660113;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 364491 366947 . + . ID=Physo138794;Parent=Physo138794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 364491 366947 . + 0 ID=Physo138794;Parent=Physo138794;rank=1 scaffold_66 . exon 364491 366947 . + . ID=Physo138794.1;Parent=Physo138794;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 369883 370879 . + . ID=Physo138797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660116;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 369883 370879 . + . ID=Physo138797;Parent=Physo138797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 369883 370360 . + 0 ID=Physo138797;Parent=Physo138797;rank=1 scaffold_66 . exon 369883 370360 . + . ID=Physo138797.1;Parent=Physo138797;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_66 . CDS 370445 370570 . + 0 ID=Physo138797;Parent=Physo138797;rank=2 scaffold_66 . exon 370445 370570 . + . ID=Physo138797.2;Parent=Physo138797;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_66 . CDS 370653 370879 . + 0 ID=Physo138797;Parent=Physo138797;rank=3 scaffold_66 . exon 370653 370879 . + . ID=Physo138797.3;Parent=Physo138797;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 ensembl protein_coding_gene 371355 371705 . + . ID=Physo138798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_660117;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 371355 371705 . + . ID=Physo138798;Parent=Physo138798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 371355 371705 . + 0 ID=Physo138798;Parent=Physo138798;rank=1 scaffold_66 . exon 371355 371705 . + . ID=Physo138798.1;Parent=Physo138798;constitutive=1;rank=1 scaffold_66 ensembl protein_coding_gene 367098 369422 . - . ID=Physo157895;biotype=protein_coding;external_name=C_scaffold_66000025;logic_name=jgi_physo1_1 scaffold_66 ensembl transcript 367098 369422 . - . ID=Physo157895;Parent=Physo157895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_66 . CDS 367098 367244 . - 0 ID=Physo157895;Parent=Physo157895;rank=12 scaffold_66 . exon 367098 367244 . - . ID=Physo157895.12;Parent=Physo157895;constitutive=1;rank=12 scaffold_66 . CDS 367318 367542 . - 0 ID=Physo157895;Parent=Physo157895;rank=11 scaffold_66 . exon 367318 367542 . - . ID=Physo157895.11;Parent=Physo157895;constitutive=1;rank=11 scaffold_66 . CDS 367616 367671 . - 0 ID=Physo157895;Parent=Physo157895;rank=10 scaffold_66 . exon 367616 367671 . - . ID=Physo157895.10;Parent=Physo157895;constitutive=1;ensembl_phase=1;rank=10 scaffold_66 . CDS 367772 367990 . - 0 ID=Physo157895;Parent=Physo157895;rank=9 scaffold_66 . exon 367772 367990 . - . ID=Physo157895.9;Parent=Physo157895;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_66 . CDS 368061 368125 . - 0 ID=Physo157895;Parent=Physo157895;rank=8 scaffold_66 . exon 368061 368125 . - . ID=Physo157895.8;Parent=Physo157895;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_66 . CDS 368312 368407 . - 0 ID=Physo157895;Parent=Physo157895;rank=7 scaffold_66 . exon 368312 368407 . - . ID=Physo157895.7;Parent=Physo157895;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_66 . CDS 368489 368489 . - 0 ID=Physo157895;Parent=Physo157895;rank=6 scaffold_66 . exon 368489 368489 . - . ID=Physo157895.6;Parent=Physo157895;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_66 . CDS 368561 368651 . - 0 ID=Physo157895;Parent=Physo157895;rank=5 scaffold_66 . exon 368561 368651 . - . ID=Physo157895.5;Parent=Physo157895;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_66 . CDS 368737 368970 . - 0 ID=Physo157895;Parent=Physo157895;rank=4 scaffold_66 . exon 368737 368970 . - . ID=Physo157895.4;Parent=Physo157895;constitutive=1;rank=4 scaffold_66 . CDS 369026 369081 . - 0 ID=Physo157895;Parent=Physo157895;rank=3 scaffold_66 . exon 369026 369081 . - . ID=Physo157895.3;Parent=Physo157895;constitutive=1;ensembl_phase=1;rank=3 scaffold_66 . CDS 369149 369353 . - 0 ID=Physo157895;Parent=Physo157895;rank=2 scaffold_66 . exon 369149 369353 . - . ID=Physo157895.2;Parent=Physo157895;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_66 . CDS 369405 369422 . - 0 ID=Physo157895;Parent=Physo157895;rank=1 scaffold_66 . exon 369405 369422 . - . ID=Physo157895.1;Parent=Physo157895;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_82 1 373594 scaffold_82 . repeat_region 2025 2033 . ? . description=dust scaffold_82 . repeat_region 5141 5174 . ? . description=trf scaffold_82 . repeat_region 5881 5894 . ? . description=dust scaffold_82 . biological_region 6899 6900 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 2633 2866 . - . ID=Physo120831;biotype=protein_coding;external_name=estExt_Genewise1.C_820050;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 2633 2866 . - . ID=Physo120831;Parent=Physo120831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 2633 2851 . - 0 ID=Physo120831;Parent=Physo120831;rank=1 scaffold_82 . exon 2633 2866 . - . ID=Physo120831.1;Parent=Physo120831;constitutive=1;ensembl_phase=-1;rank=1 scaffold_82 ensembl protein_coding_gene 10786 11956 . - . ID=Physo140100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820001;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 10786 11956 . - . ID=Physo140100;Parent=Physo140100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 10786 11471 . - 0 ID=Physo140100;Parent=Physo140100;rank=3 scaffold_82 . exon 10786 11471 . - . ID=Physo140100.3;Parent=Physo140100;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 . CDS 11600 11666 . - 0 ID=Physo140100;Parent=Physo140100;rank=2 scaffold_82 . exon 11600 11666 . - . ID=Physo140100.2;Parent=Physo140100;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_82 . CDS 11687 11956 . - 0 ID=Physo140100;Parent=Physo140100;rank=1 scaffold_82 . exon 11687 11956 . - . ID=Physo140100.1;Parent=Physo140100;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 14526 18316 . + . ID=Physo140101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820002;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 14526 18316 . + . ID=Physo140101;Parent=Physo140101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 14526 14980 . + 0 ID=Physo140101;Parent=Physo140101;rank=1 scaffold_82 . exon 14526 14980 . + . ID=Physo140101.1;Parent=Physo140101;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 15046 15533 . + 0 ID=Physo140101;Parent=Physo140101;rank=2 scaffold_82 . exon 15046 15533 . + . ID=Physo140101.2;Parent=Physo140101;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 15571 15668 . + 0 ID=Physo140101;Parent=Physo140101;rank=3 scaffold_82 . exon 15571 15668 . + . ID=Physo140101.3;Parent=Physo140101;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 . CDS 16022 16087 . + 0 ID=Physo140101;Parent=Physo140101;rank=4 scaffold_82 . exon 16022 16087 . + . ID=Physo140101.4;Parent=Physo140101;constitutive=1;rank=4 scaffold_82 . CDS 16356 16680 . + 0 ID=Physo140101;Parent=Physo140101;rank=5 scaffold_82 . exon 16356 16680 . + . ID=Physo140101.5;Parent=Physo140101;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_82 . CDS 16795 16887 . + 0 ID=Physo140101;Parent=Physo140101;rank=6 scaffold_82 . exon 16795 16887 . + . ID=Physo140101.6;Parent=Physo140101;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_82 . CDS 17101 17196 . + 0 ID=Physo140101;Parent=Physo140101;rank=7 scaffold_82 . exon 17101 17196 . + . ID=Physo140101.7;Parent=Physo140101;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_82 . CDS 17415 18316 . + 0 ID=Physo140101;Parent=Physo140101;rank=8 scaffold_82 . exon 17415 18316 . + . ID=Physo140101.8;Parent=Physo140101;constitutive=1;ensembl_phase=1;rank=8 scaffold_82 ensembl protein_coding_gene 18505 19463 . + . ID=Physo140102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820003;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 18505 19463 . + . ID=Physo140102;Parent=Physo140102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 18505 18891 . + 0 ID=Physo140102;Parent=Physo140102;rank=1 scaffold_82 . exon 18505 18891 . + . ID=Physo140102.1;Parent=Physo140102;constitutive=1;rank=1 scaffold_82 . CDS 19032 19463 . + 0 ID=Physo140102;Parent=Physo140102;rank=2 scaffold_82 . exon 19032 19463 . + . ID=Physo140102.2;Parent=Physo140102;constitutive=1;rank=2 scaffold_82 . repeat_region 19841 19890 . ? . description=dust scaffold_82 . repeat_region 20272 20309 . ? . description=trf scaffold_82 . repeat_region 22405 22454 . ? . description=dust scaffold_82 . repeat_region 22917 22954 . ? . description=trf scaffold_82 . repeat_region 25114 25133 . ? . description=trf scaffold_82 . biological_region 26213 26218 0.999 - . logic_name=eponine scaffold_82 . biological_region 26497 26497 0.999 + . logic_name=eponine scaffold_82 . repeat_region 26889 26896 . ? . description=dust scaffold_82 . repeat_region 28008 28739 . ? . description=dust scaffold_82 . repeat_region 28740 44257 . ? . description=dust scaffold_82 ensembl protein_coding_gene 25266 25865 . - . ID=Physo140103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820004;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 25266 25865 . - . ID=Physo140103;Parent=Physo140103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 25266 25865 . - 0 ID=Physo140103;Parent=Physo140103;rank=1 scaffold_82 . exon 25266 25865 . - . ID=Physo140103.1;Parent=Physo140103;constitutive=1;rank=1 scaffold_82 . repeat_region 28740 44257 . ? . description=dust scaffold_82 . biological_region 44657 44660 0.999 + . logic_name=eponine scaffold_82 . biological_region 44785 44789 0.999 + . logic_name=eponine scaffold_82 . biological_region 44907 44911 0.999 - . logic_name=eponine scaffold_82 . repeat_region 45574 46198 . ? . description=dust scaffold_82 . repeat_region 46498 46505 . ? . description=dust scaffold_82 . repeat_region 48733 48753 . ? . description=trf scaffold_82 . repeat_region 48753 48792 . ? . description=dust scaffold_82 . repeat_region 48753 48792 . ? . description=trf scaffold_82 ensembl tRNA_gene 46655 46727 . - . ID=EPrPSOG00000000067;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_82 ensembl transcript 46655 46727 . - . ID=EPrPSOT00000000067;Parent=EPrPSOG00000000067;biotype=tRNA;logic_name=ncrna_eg scaffold_82 ensembl tRNA_gene 44800 44871 . - . ID=EPrPSOG00000000150;biotype=tRNA;description=tRNA-Pro for anticodon UGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_82 ensembl transcript 44800 44871 . - . ID=EPrPSOT00000000150;Parent=EPrPSOG00000000150;biotype=tRNA;logic_name=ncrna_eg scaffold_82 ensembl pseudogenic_tRNA 44243 44316 . - . ID=EPrPSOG00000000216;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_82 ensembl transcript 44243 44316 . - . ID=EPrPSOT00000000216;Parent=EPrPSOG00000000216;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_82 . exon 46655 46727 . - . ID=EPrPSOE00000000067;Parent=EPrPSOT00000000067;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . exon 44800 44871 . - . ID=EPrPSOE00000000150;Parent=EPrPSOT00000000150;constitutive=1;rank=1 scaffold_82 . exon 44243 44316 . - . ID=EPrPSOE00000000216;Parent=EPrPSOT00000000216;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl tRNA_gene 52208 52285 . + . ID=EPrPSOG00000000263;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_82 ensembl transcript 52208 52285 . + . ID=EPrPSOT00000000263;Parent=EPrPSOG00000000263;biotype=tRNA;logic_name=ncrna_eg scaffold_82 . exon 52208 52285 . + . ID=EPrPSOE00000000263;Parent=EPrPSOT00000000263;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 55125 56120 . - . ID=Physo140104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820005;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 55125 56120 . - . ID=Physo140104;Parent=Physo140104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 55125 55444 . - 0 ID=Physo140104;Parent=Physo140104;rank=2 scaffold_82 . exon 55125 55444 . - . ID=Physo140104.2;Parent=Physo140104;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 56054 56120 . - 0 ID=Physo140104;Parent=Physo140104;rank=1 scaffold_82 . exon 56054 56120 . - . ID=Physo140104.1;Parent=Physo140104;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . repeat_region 59677 59687 . ? . description=dust scaffold_82 . repeat_region 61774 61781 . ? . description=dust scaffold_82 . repeat_region 65785 65793 . ? . description=dust scaffold_82 . repeat_region 66844 66863 . ? . description=dust scaffold_82 . repeat_region 66844 66863 . ? . description=trf scaffold_82 . biological_region 73055 73060 0.999 - . logic_name=eponine scaffold_82 . biological_region 74376 74379 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 72750 80228 . + . ID=Physo140105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820006;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 72750 80228 . + . ID=Physo140105;Parent=Physo140105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 72750 72807 . + 0 ID=Physo140105;Parent=Physo140105;rank=1 scaffold_82 . exon 72750 72807 . + . ID=Physo140105.1;Parent=Physo140105;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 72879 73060 . + 0 ID=Physo140105;Parent=Physo140105;rank=2 scaffold_82 . exon 72879 73060 . + . ID=Physo140105.2;Parent=Physo140105;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 73150 73228 . + 0 ID=Physo140105;Parent=Physo140105;rank=3 scaffold_82 . exon 73150 73228 . + . ID=Physo140105.3;Parent=Physo140105;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_82 . CDS 73300 74434 . + 0 ID=Physo140105;Parent=Physo140105;rank=4 scaffold_82 . exon 73300 74434 . + . ID=Physo140105.4;Parent=Physo140105;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_82 . CDS 74657 74685 . + 0 ID=Physo140105;Parent=Physo140105;rank=5 scaffold_82 . exon 74657 74685 . + . ID=Physo140105.5;Parent=Physo140105;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_82 . CDS 74824 76890 . + 0 ID=Physo140105;Parent=Physo140105;rank=6 scaffold_82 . exon 74824 76890 . + . ID=Physo140105.6;Parent=Physo140105;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_82 . CDS 76993 80228 . + 0 ID=Physo140105;Parent=Physo140105;rank=7 scaffold_82 . exon 76993 80228 . + . ID=Physo140105.7;Parent=Physo140105;constitutive=1;ensembl_phase=1;rank=7 scaffold_82 . repeat_region 82114 82143 . ? . description=trf scaffold_82 . repeat_region 82684 82707 . ? . description=trf scaffold_82 ensembl protein_coding_gene 80454 81542 . - . ID=Physo140106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820007;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 80454 81542 . - . ID=Physo140106;Parent=Physo140106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 80454 81542 . - 0 ID=Physo140106;Parent=Physo140106;rank=1 scaffold_82 . exon 80454 81542 . - . ID=Physo140106.1;Parent=Physo140106;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 83033 84679 . - . ID=Physo140108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820009;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 83033 84679 . - . ID=Physo140108;Parent=Physo140108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 83033 83599 . - 0 ID=Physo140108;Parent=Physo140108;rank=5 scaffold_82 . exon 83033 83599 . - . ID=Physo140108.7;Parent=Physo140108;constitutive=1;rank=7 scaffold_82 . CDS 83681 83752 . - 0 ID=Physo140108;Parent=Physo140108;rank=4 scaffold_82 . exon 83681 83752 . - . ID=Physo140108.6;Parent=Physo140108;constitutive=1;rank=6 scaffold_82 . CDS 83813 83876 . - 0 ID=Physo140108;Parent=Physo140108;rank=3 scaffold_82 . exon 83813 83876 . - . ID=Physo140108.5;Parent=Physo140108;constitutive=1;ensembl_phase=2;rank=5 scaffold_82 . CDS 83950 84020 . - 0 ID=Physo140108;Parent=Physo140108;rank=2 scaffold_82 . exon 83950 84020 . - . ID=Physo140108.4;Parent=Physo140108;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_82 . CDS 84083 84088 . - 0 ID=Physo140108;Parent=Physo140108;rank=1 scaffold_82 . exon 84083 84191 . - . ID=Physo140108.3;Parent=Physo140108;constitutive=1;ensembl_phase=-1;rank=3 scaffold_82 . exon 84264 84515 . - . ID=Physo140108.2;Parent=Physo140108;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_82 . exon 84656 84679 . - . ID=Physo140108.1;Parent=Physo140108;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_82 ensembl protein_coding_gene 85145 89409 . - . ID=Physo140109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820010;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 85145 89409 . - . ID=Physo140109;Parent=Physo140109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 85145 89409 . - . ID=Physo140109.1;Parent=Physo140109;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_82 . CDS 85408 89409 . - 0 ID=Physo140109;Parent=Physo140109;rank=1 scaffold_82 ensembl protein_coding_gene 82223 82803 . + . ID=Physo158106;biotype=protein_coding;external_name=C_scaffold_82000002;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 82223 82803 . + . ID=Physo158106;Parent=Physo158106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 82223 82321 . + 0 ID=Physo158106;Parent=Physo158106;rank=1 scaffold_82 . exon 82223 82321 . + . ID=Physo158106.1;Parent=Physo158106;constitutive=1;rank=1 scaffold_82 . CDS 82411 82454 . + 0 ID=Physo158106;Parent=Physo158106;rank=2 scaffold_82 . exon 82411 82454 . + . ID=Physo158106.2;Parent=Physo158106;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_82 . CDS 82526 82634 . + 0 ID=Physo158106;Parent=Physo158106;rank=3 scaffold_82 . exon 82526 82634 . + . ID=Physo158106.3;Parent=Physo158106;constitutive=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 82723 82803 . + 0 ID=Physo158106;Parent=Physo158106;rank=4 scaffold_82 . exon 82723 82803 . + . ID=Physo158106.4;Parent=Physo158106;constitutive=1;rank=4 scaffold_82 . biological_region 88576 88577 0.999 - . logic_name=eponine scaffold_82 . biological_region 89115 89117 0.999 - . logic_name=eponine scaffold_82 . biological_region 89124 89129 0.999 - . logic_name=eponine scaffold_82 . biological_region 89138 89142 0.999 - . logic_name=eponine scaffold_82 . biological_region 89415 89420 0.999 - . logic_name=eponine scaffold_82 . biological_region 90570 90577 0.999 + . logic_name=eponine scaffold_82 . biological_region 90732 90739 0.999 - . logic_name=eponine scaffold_82 . biological_region 92603 92606 0.999 + . logic_name=eponine scaffold_82 . biological_region 92690 92692 0.999 - . logic_name=eponine scaffold_82 . biological_region 95255 95257 0.999 - . logic_name=eponine scaffold_82 . biological_region 98126 98128 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 90525 92162 . + . ID=Physo140110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820011;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 90525 92162 . + . ID=Physo140110;Parent=Physo140110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 90525 92162 . + 0 ID=Physo140110;Parent=Physo140110;rank=1 scaffold_82 . exon 90525 92162 . + . ID=Physo140110.1;Parent=Physo140110;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 92458 92843 . - . ID=Physo140111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820012;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 92458 92843 . - . ID=Physo140111;Parent=Physo140111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 92458 92510 . - 0 ID=Physo140111;Parent=Physo140111;rank=2 scaffold_82 . exon 92458 92510 . - . ID=Physo140111.2;Parent=Physo140111;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 92591 92843 . - 0 ID=Physo140111;Parent=Physo140111;rank=1 scaffold_82 . exon 92591 92843 . - . ID=Physo140111.1;Parent=Physo140111;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 93441 96785 . + . ID=Physo140112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820013;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 93441 96785 . + . ID=Physo140112;Parent=Physo140112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 93441 96785 . + 0 ID=Physo140112;Parent=Physo140112;rank=1 scaffold_82 . exon 93441 96785 . + . ID=Physo140112.1;Parent=Physo140112;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 96980 98511 . - . ID=Physo140113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820014;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 96980 98511 . - . ID=Physo140113;Parent=Physo140113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 96980 96995 . - 0 ID=Physo140113;Parent=Physo140113;rank=6 scaffold_82 . exon 96980 96995 . - . ID=Physo140113.6;Parent=Physo140113;constitutive=1;ensembl_phase=2;rank=6 scaffold_82 . CDS 97084 97247 . - 0 ID=Physo140113;Parent=Physo140113;rank=5 scaffold_82 . exon 97084 97247 . - . ID=Physo140113.5;Parent=Physo140113;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_82 . CDS 97319 97492 . - 0 ID=Physo140113;Parent=Physo140113;rank=4 scaffold_82 . exon 97319 97492 . - . ID=Physo140113.4;Parent=Physo140113;constitutive=1;rank=4 scaffold_82 . CDS 97568 97813 . - 0 ID=Physo140113;Parent=Physo140113;rank=3 scaffold_82 . exon 97568 97813 . - . ID=Physo140113.3;Parent=Physo140113;constitutive=1;rank=3 scaffold_82 . CDS 97885 98003 . - 0 ID=Physo140113;Parent=Physo140113;rank=2 scaffold_82 . exon 97885 98003 . - . ID=Physo140113.2;Parent=Physo140113;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 98073 98511 . - 0 ID=Physo140113;Parent=Physo140113;rank=1 scaffold_82 . exon 98073 98511 . - . ID=Physo140113.1;Parent=Physo140113;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . repeat_region 102129 102186 . ? . description=trf scaffold_82 . repeat_region 102330 102383 . ? . description=trf scaffold_82 . repeat_region 108139 108146 . ? . description=dust scaffold_82 ensembl protein_coding_gene 105836 107348 . - . ID=Physo140114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820015;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 105836 107348 . - . ID=Physo140114;Parent=Physo140114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 105836 107087 . - 0 ID=Physo140114;Parent=Physo140114;rank=3 scaffold_82 . exon 105836 107087 . - . ID=Physo140114.3;Parent=Physo140114;constitutive=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 107227 107246 . - 0 ID=Physo140114;Parent=Physo140114;rank=2 scaffold_82 . exon 107227 107246 . - . ID=Physo140114.2;Parent=Physo140114;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_82 . CDS 107277 107348 . - 0 ID=Physo140114;Parent=Physo140114;rank=1 scaffold_82 . exon 107277 107348 . - . ID=Physo140114.1;Parent=Physo140114;constitutive=1;rank=1 scaffold_82 . biological_region 116709 116713 0.999 + . logic_name=eponine scaffold_82 . biological_region 116850 116855 0.999 + . logic_name=eponine scaffold_82 . biological_region 116858 116859 0.999 - . logic_name=eponine scaffold_82 . biological_region 116884 116886 0.999 - . logic_name=eponine scaffold_82 . biological_region 116893 116897 0.999 + . logic_name=eponine scaffold_82 . biological_region 116911 116916 0.999 + . logic_name=eponine scaffold_82 . biological_region 116932 116932 0.999 - . logic_name=eponine scaffold_82 . biological_region 116945 116946 0.999 - . logic_name=eponine scaffold_82 . biological_region 117036 117037 0.999 + . logic_name=eponine scaffold_82 . biological_region 117056 117059 0.999 + . logic_name=eponine scaffold_82 ensembl protein_coding_gene 109944 111272 . + . ID=Physo140115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820016;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 109944 111272 . + . ID=Physo140115;Parent=Physo140115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 109944 110025 . + 0 ID=Physo140115;Parent=Physo140115;rank=1 scaffold_82 . exon 109944 110025 . + . ID=Physo140115.1;Parent=Physo140115;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 110053 110238 . + 0 ID=Physo140115;Parent=Physo140115;rank=2 scaffold_82 . exon 110053 110238 . + . ID=Physo140115.2;Parent=Physo140115;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 110302 110429 . + 0 ID=Physo140115;Parent=Physo140115;rank=3 scaffold_82 . exon 110302 110429 . + . ID=Physo140115.3;Parent=Physo140115;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 . CDS 110667 111272 . + 0 ID=Physo140115;Parent=Physo140115;rank=4 scaffold_82 . exon 110667 111272 . + . ID=Physo140115.4;Parent=Physo140115;constitutive=1;rank=4 scaffold_82 ensembl protein_coding_gene 116749 118765 . + . ID=Physo140116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820017;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 116749 118765 . + . ID=Physo140116;Parent=Physo140116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 116749 117687 . + 0 ID=Physo140116;Parent=Physo140116;rank=1 scaffold_82 . exon 116749 117687 . + . ID=Physo140116.1;Parent=Physo140116;constitutive=1;rank=1 scaffold_82 . CDS 117770 117934 . + 0 ID=Physo140116;Parent=Physo140116;rank=2 scaffold_82 . exon 117770 117934 . + . ID=Physo140116.2;Parent=Physo140116;constitutive=1;rank=2 scaffold_82 . CDS 118003 118131 . + 0 ID=Physo140116;Parent=Physo140116;rank=3 scaffold_82 . CDS 118209 118556 . + 0 ID=Physo140116;Parent=Physo140116;rank=4 scaffold_82 . repeat_region 120614 120633 . ? . description=trf scaffold_82 . repeat_region 123733 123740 . ? . description=dust scaffold_82 . repeat_region 126391 126457 . ? . description=trf scaffold_82 . repeat_region 126397 126471 . ? . description=trf scaffold_82 . repeat_region 126556 126603 . ? . description=trf scaffold_82 . repeat_region 127192 127201 . ? . description=dust scaffold_82 . repeat_region 127321 127336 . ? . description=dust scaffold_82 ensembl protein_coding_gene 119956 121233 . + . ID=Physo109267;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_820001;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 119956 121233 . + . ID=Physo109267;Parent=Physo109267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 119956 121233 . + . ID=Physo109267.1;Parent=Physo109267;constitutive=1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 119977 121233 . + 0 ID=Physo109267;Parent=Physo109267;rank=1 scaffold_82 ensembl protein_coding_gene 121731 122496 . - . ID=Physo109268;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_820002;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 121731 122496 . - . ID=Physo109268;Parent=Physo109268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 121731 122207 . - . ID=Physo109268.2;Parent=Physo109268;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_82 . CDS 121940 122207 . - 0 ID=Physo109268;Parent=Physo109268;rank=2 scaffold_82 . CDS 122373 122467 . - 0 ID=Physo109268;Parent=Physo109268;rank=1 scaffold_82 . exon 122373 122496 . - . ID=Physo109268.1;Parent=Physo109268;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_82 . exon 118003 118131 . + . ID=Physo140116.3;Parent=Physo140116;constitutive=1;rank=3 scaffold_82 . exon 118209 118765 . + . ID=Physo140116.4;Parent=Physo140116;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_82 ensembl protein_coding_gene 124479 125472 . + . ID=Physo140119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820020;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 124479 125472 . + . ID=Physo140119;Parent=Physo140119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 124479 125472 . + . ID=Physo140119.1;Parent=Physo140119;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 124519 125298 . + 0 ID=Physo140119;Parent=Physo140119;rank=1 scaffold_82 ensembl protein_coding_gene 125891 126966 . + . ID=Physo140120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820021;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 125891 126966 . + . ID=Physo140120;Parent=Physo140120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 125891 126966 . + . ID=Physo140120.1;Parent=Physo140120;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 125908 126891 . + 0 ID=Physo140120;Parent=Physo140120;rank=1 scaffold_82 ensembl protein_coding_gene 127422 128892 . - . ID=Physo140121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820022;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 127422 128892 . - . ID=Physo140121;Parent=Physo140121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 127422 128036 . - 0 ID=Physo140121;Parent=Physo140121;rank=2 scaffold_82 . exon 127422 128036 . - . ID=Physo140121.2;Parent=Physo140121;constitutive=1;rank=2 scaffold_82 . CDS 128173 128892 . - 0 ID=Physo140121;Parent=Physo140121;rank=1 scaffold_82 . biological_region 129835 129842 0.999 + . logic_name=eponine scaffold_82 . biological_region 131021 131023 0.999 - . logic_name=eponine scaffold_82 . biological_region 132246 132248 0.999 + . logic_name=eponine scaffold_82 . biological_region 132476 132480 0.999 - . logic_name=eponine scaffold_82 . exon 128173 128892 . - . ID=Physo140121.1;Parent=Physo140121;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 129593 130156 . + . ID=Physo140122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820023;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 129593 130156 . + . ID=Physo140122;Parent=Physo140122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 129593 130156 . + 0 ID=Physo140122;Parent=Physo140122;rank=1 scaffold_82 . exon 129593 130156 . + . ID=Physo140122.1;Parent=Physo140122;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 130702 131304 . + . ID=Physo140123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820024;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 130702 131304 . + . ID=Physo140123;Parent=Physo140123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 130702 131304 . + 0 ID=Physo140123;Parent=Physo140123;rank=1 scaffold_82 . exon 130702 131304 . + . ID=Physo140123.1;Parent=Physo140123;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 132135 133412 . + . ID=Physo140124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820025;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 132135 133412 . + . ID=Physo140124;Parent=Physo140124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 132135 133412 . + 0 ID=Physo140124;Parent=Physo140124;rank=1 scaffold_82 . exon 132135 133412 . + . ID=Physo140124.1;Parent=Physo140124;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 134053 136209 . + . ID=Physo140125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820026;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 134053 136209 . + . ID=Physo140125;Parent=Physo140125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 134053 136209 . + 0 ID=Physo140125;Parent=Physo140125;rank=1 scaffold_82 . exon 134053 136209 . + . ID=Physo140125.1;Parent=Physo140125;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 136418 137889 . + . ID=Physo140126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820027;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 136418 137889 . + . ID=Physo140126;Parent=Physo140126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 136418 137889 . + . ID=Physo140126.1;Parent=Physo140126;constitutive=1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 136468 137889 . + 0 ID=Physo140126;Parent=Physo140126;rank=1 scaffold_82 . repeat_region 139506 139666 . ? . description=trf scaffold_82 . repeat_region 139512 139665 . ? . description=trf scaffold_82 . repeat_region 139527 139656 . ? . description=trf scaffold_82 . repeat_region 139587 140168 . ? . description=trf scaffold_82 . repeat_region 139833 139917 . ? . description=trf scaffold_82 . repeat_region 139839 140499 . ? . description=trf scaffold_82 . repeat_region 139854 139908 . ? . description=trf scaffold_82 . repeat_region 140085 140234 . ? . description=trf scaffold_82 . repeat_region 140165 141507 . ? . description=trf scaffold_82 . repeat_region 140423 140490 . ? . description=trf scaffold_82 . repeat_region 140631 140781 . ? . description=trf scaffold_82 . repeat_region 140667 140751 . ? . description=trf scaffold_82 . repeat_region 140688 140742 . ? . description=trf scaffold_82 . repeat_region 140919 140994 . ? . description=trf scaffold_82 . repeat_region 141171 141246 . ? . description=trf scaffold_82 . repeat_region 141171 141819 . ? . description=trf scaffold_82 . repeat_region 141423 141558 . ? . description=trf scaffold_82 . repeat_region 141423 141567 . ? . description=trf scaffold_82 . repeat_region 141483 142062 . ? . description=trf scaffold_82 . repeat_region 141735 141810 . ? . description=trf scaffold_82 . repeat_region 141987 142101 . ? . description=trf scaffold_82 . repeat_region 141987 142101 . ? . description=trf scaffold_82 . repeat_region 142008 142092 . ? . description=trf scaffold_82 . repeat_region 146856 146894 . ? . description=trf scaffold_82 . repeat_region 146864 146922 . ? . description=dust scaffold_82 . repeat_region 146867 146894 . ? . description=trf scaffold_82 . repeat_region 147270 147343 . ? . description=trf scaffold_82 . repeat_region 147462 147523 . ? . description=trf scaffold_82 ensembl protein_coding_gene 138654 145574 . + . ID=Physo140127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820028;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 138654 145574 . + . ID=Physo140127;Parent=Physo140127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 138654 140072 . + 0 ID=Physo140127;Parent=Physo140127;rank=1 scaffold_82 . exon 138654 140072 . + . ID=Physo140127.1;Parent=Physo140127;constitutive=1;rank=1 scaffold_82 . CDS 140105 140398 . + 0 ID=Physo140127;Parent=Physo140127;rank=2 scaffold_82 . exon 140105 140398 . + . ID=Physo140127.2;Parent=Physo140127;constitutive=1;rank=2 scaffold_82 . CDS 140421 145574 . + 0 ID=Physo140127;Parent=Physo140127;rank=3 scaffold_82 . exon 140421 145574 . + . ID=Physo140127.3;Parent=Physo140127;constitutive=1;rank=3 scaffold_82 ensembl protein_coding_gene 146823 149163 . + . ID=Physo140128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820029;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 146823 149163 . + . ID=Physo140128;Parent=Physo140128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 146823 149024 . + 0 ID=Physo140128;Parent=Physo140128;rank=1 scaffold_82 . exon 146823 149163 . + . ID=Physo140128.1;Parent=Physo140128;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_82 . biological_region 149603 149604 0.999 + . logic_name=eponine scaffold_82 . biological_region 151328 151332 0.999 - . logic_name=eponine scaffold_82 . biological_region 151921 151925 0.999 + . logic_name=eponine scaffold_82 . biological_region 152075 152081 0.999 - . logic_name=eponine scaffold_82 . biological_region 152102 152103 0.999 - . logic_name=eponine scaffold_82 . biological_region 152145 152150 0.999 - . logic_name=eponine scaffold_82 . biological_region 154197 154203 0.999 + . logic_name=eponine scaffold_82 . biological_region 154389 154390 0.999 - . logic_name=eponine scaffold_82 . biological_region 154742 154746 0.999 + . logic_name=eponine scaffold_82 . biological_region 154817 154820 0.999 - . logic_name=eponine scaffold_82 . biological_region 154841 154841 0.999 - . logic_name=eponine scaffold_82 . biological_region 155414 155415 0.999 - . logic_name=eponine scaffold_82 . biological_region 155901 155902 0.999 - . logic_name=eponine scaffold_82 . biological_region 157157 157158 0.999 + . logic_name=eponine scaffold_82 . biological_region 157173 157179 0.999 + . logic_name=eponine scaffold_82 ensembl protein_coding_gene 149327 151177 . - . ID=Physo140129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820030;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 149327 151177 . - . ID=Physo140129;Parent=Physo140129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 149327 151177 . - 0 ID=Physo140129;Parent=Physo140129;rank=1 scaffold_82 . exon 149327 151177 . - . ID=Physo140129.1;Parent=Physo140129;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 151779 153542 . + . ID=Physo140130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820031;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 151779 153542 . + . ID=Physo140130;Parent=Physo140130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 151779 153542 . + 0 ID=Physo140130;Parent=Physo140130;rank=1 scaffold_82 . exon 151779 153542 . + . ID=Physo140130.1;Parent=Physo140130;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 153618 154868 . - . ID=Physo140131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820032;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 153618 154868 . - . ID=Physo140131;Parent=Physo140131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 153618 154868 . - . ID=Physo140131.1;Parent=Physo140131;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_82 . CDS 153903 154868 . - 0 ID=Physo140131;Parent=Physo140131;rank=1 scaffold_82 ensembl protein_coding_gene 156312 157827 . - . ID=Physo140132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820033;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 156312 157827 . - . ID=Physo140132;Parent=Physo140132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 156312 157827 . - . ID=Physo140132.1;Parent=Physo140132;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_82 . CDS 156376 157827 . - 0 ID=Physo140132;Parent=Physo140132;rank=1 scaffold_82 . repeat_region 161759 161802 . ? . description=trf scaffold_82 . repeat_region 161804 161869 . ? . description=trf scaffold_82 . repeat_region 163373 163396 . ? . description=dust scaffold_82 . repeat_region 163373 163396 . ? . description=trf scaffold_82 ensembl protein_coding_gene 158203 160359 . - . ID=Physo140133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820034;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 158203 160359 . - . ID=Physo140133;Parent=Physo140133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 158203 160359 . - 0 ID=Physo140133;Parent=Physo140133;rank=1 scaffold_82 . exon 158203 160359 . - . ID=Physo140133.1;Parent=Physo140133;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 160577 162013 . + . ID=Physo140134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820035;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 160577 162013 . + . ID=Physo140134;Parent=Physo140134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 160577 162013 . + . ID=Physo140134.1;Parent=Physo140134;constitutive=1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 160685 162013 . + 0 ID=Physo140134;Parent=Physo140134;rank=1 scaffold_82 ensembl protein_coding_gene 162353 162919 . - . ID=Physo158112;biotype=protein_coding;external_name=C_scaffold_82000008;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 162353 162919 . - . ID=Physo158112;Parent=Physo158112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 162353 162919 . - 0 ID=Physo158112;Parent=Physo158112;rank=1 scaffold_82 . exon 162353 162919 . - . ID=Physo158112.1;Parent=Physo158112;constitutive=1;rank=1 scaffold_82 . biological_region 168313 168316 0.999 - . logic_name=eponine scaffold_82 . biological_region 170097 170101 0.999 + . logic_name=eponine scaffold_82 . biological_region 170578 170578 0.999 + . logic_name=eponine scaffold_82 . biological_region 170933 170938 0.999 + . logic_name=eponine scaffold_82 . biological_region 171764 171765 0.999 - . logic_name=eponine scaffold_82 . biological_region 174414 174414 0.999 + . logic_name=eponine scaffold_82 . biological_region 175354 175355 0.999 + . logic_name=eponine scaffold_82 . biological_region 175441 175443 0.999 - . logic_name=eponine scaffold_82 . biological_region 175467 175469 0.999 + . logic_name=eponine scaffold_82 . biological_region 175494 175501 0.999 + . logic_name=eponine scaffold_82 . biological_region 175541 175545 0.999 - . logic_name=eponine scaffold_82 . biological_region 176847 176851 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 174901 177230 . + . ID=Physo140140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820041;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 174901 177230 . + . ID=Physo140140;Parent=Physo140140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 174901 174959 . + 0 ID=Physo140140;Parent=Physo140140;rank=1 scaffold_82 . exon 174901 174959 . + . ID=Physo140140.1;Parent=Physo140140;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 175066 175184 . + 0 ID=Physo140140;Parent=Physo140140;rank=2 scaffold_82 . exon 175066 175184 . + . ID=Physo140140.2;Parent=Physo140140;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 175275 177106 . + 0 ID=Physo140140;Parent=Physo140140;rank=3 scaffold_82 . exon 175275 177106 . + . ID=Physo140140.3;Parent=Physo140140;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 . CDS 177213 177230 . + 0 ID=Physo140140;Parent=Physo140140;rank=4 scaffold_82 ensembl protein_coding_gene 168086 168989 . - . ID=Physo158115;biotype=protein_coding;external_name=C_scaffold_82000011;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 168086 168989 . - . ID=Physo158115;Parent=Physo158115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 168086 168429 . - 0 ID=Physo158115;Parent=Physo158115;rank=2 scaffold_82 . exon 168086 168429 . - . ID=Physo158115.2;Parent=Physo158115;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 168488 168989 . - 0 ID=Physo158115;Parent=Physo158115;rank=1 scaffold_82 . exon 168488 168989 . - . ID=Physo158115.1;Parent=Physo158115;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 169352 172589 . - . ID=Physo158117;biotype=protein_coding;external_name=C_scaffold_82000013;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 169352 172589 . - . ID=Physo158117;Parent=Physo158117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 169352 169748 . - 0 ID=Physo158117;Parent=Physo158117;rank=5 scaffold_82 . exon 169352 169748 . - . ID=Physo158117.5;Parent=Physo158117;constitutive=1;ensembl_phase=2;rank=5 scaffold_82 . CDS 169809 170434 . - 0 ID=Physo158117;Parent=Physo158117;rank=4 scaffold_82 . exon 169809 170434 . - . ID=Physo158117.4;Parent=Physo158117;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_82 . CDS 170505 170580 . - 0 ID=Physo158117;Parent=Physo158117;rank=3 scaffold_82 . exon 170505 170580 . - . ID=Physo158117.3;Parent=Physo158117;constitutive=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 170842 172144 . - 0 ID=Physo158117;Parent=Physo158117;rank=2 scaffold_82 . exon 170842 172144 . - . ID=Physo158117.2;Parent=Physo158117;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_82 . CDS 172286 172589 . - 0 ID=Physo158117;Parent=Physo158117;rank=1 scaffold_82 . exon 172286 172589 . - . ID=Physo158117.1;Parent=Physo158117;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 174140 174677 . - . ID=Physo158118;biotype=protein_coding;external_name=C_scaffold_82000014;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 174140 174677 . - . ID=Physo158118;Parent=Physo158118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 174140 174261 . - 0 ID=Physo158118;Parent=Physo158118;rank=3 scaffold_82 . exon 174140 174261 . - . ID=Physo158118.3;Parent=Physo158118;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 . CDS 174360 174471 . - 0 ID=Physo158118;Parent=Physo158118;rank=2 scaffold_82 . exon 174360 174471 . - . ID=Physo158118.2;Parent=Physo158118;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_82 . CDS 174561 174677 . - 0 ID=Physo158118;Parent=Physo158118;rank=1 scaffold_82 . exon 174561 174677 . - . ID=Physo158118.1;Parent=Physo158118;constitutive=1;rank=1 scaffold_82 . repeat_region 179207 179230 . ? . description=trf scaffold_82 . repeat_region 179332 179364 . ? . description=dust scaffold_82 . repeat_region 184549 184606 . ? . description=trf scaffold_82 . exon 177213 177230 . + . ID=Physo140140.4;Parent=Physo140140;constitutive=1;rank=4 scaffold_82 ensembl protein_coding_gene 178751 183928 . + . ID=Physo140141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820042;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 178751 183928 . + . ID=Physo140141;Parent=Physo140141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 178751 183928 . + 0 ID=Physo140141;Parent=Physo140141;rank=1 scaffold_82 . exon 178751 183928 . + . ID=Physo140141.1;Parent=Physo140141;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 185694 187281 . - . ID=Physo140143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820044;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 185694 187281 . - . ID=Physo140143;Parent=Physo140143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 185694 186134 . - 0 ID=Physo140143;Parent=Physo140143;rank=5 scaffold_82 . exon 185694 186134 . - . ID=Physo140143.5;Parent=Physo140143;constitutive=1;rank=5 scaffold_82 . CDS 186532 186636 . - 0 ID=Physo140143;Parent=Physo140143;rank=4 scaffold_82 . exon 186532 186636 . - . ID=Physo140143.4;Parent=Physo140143;constitutive=1;rank=4 scaffold_82 . CDS 186701 186838 . - 0 ID=Physo140143;Parent=Physo140143;rank=3 scaffold_82 . exon 186701 186838 . - . ID=Physo140143.3;Parent=Physo140143;constitutive=1;rank=3 scaffold_82 . CDS 186908 187105 . - 0 ID=Physo140143;Parent=Physo140143;rank=2 scaffold_82 . CDS 187177 187281 . - 0 ID=Physo140143;Parent=Physo140143;rank=1 scaffold_82 ensembl protein_coding_gene 184192 184713 . - . ID=Physo158121;biotype=protein_coding;external_name=C_scaffold_82000017;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 184192 184713 . - . ID=Physo158121;Parent=Physo158121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 184192 184713 . - 0 ID=Physo158121;Parent=Physo158121;rank=1 scaffold_82 . exon 184192 184713 . - . ID=Physo158121.1;Parent=Physo158121;constitutive=1;rank=1 scaffold_82 . biological_region 187183 187191 0.999 + . logic_name=eponine scaffold_82 . biological_region 188571 188571 0.999 + . logic_name=eponine scaffold_82 . biological_region 188656 188662 0.999 - . logic_name=eponine scaffold_82 . biological_region 188938 188941 0.999 - . logic_name=eponine scaffold_82 . biological_region 189233 189235 0.999 + . logic_name=eponine scaffold_82 . biological_region 190093 190094 0.999 + . logic_name=eponine scaffold_82 . biological_region 190112 190120 0.999 - . logic_name=eponine scaffold_82 . biological_region 190733 190734 0.999 - . logic_name=eponine scaffold_82 . biological_region 192665 192670 0.999 + . logic_name=eponine scaffold_82 . biological_region 194884 194884 0.999 + . logic_name=eponine scaffold_82 . biological_region 194986 194990 0.999 - . logic_name=eponine scaffold_82 . biological_region 195034 195037 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 188439 190199 . + . ID=Physo120827;biotype=protein_coding;external_name=estExt_Genewise1.C_820046;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 188439 190199 . + . ID=Physo120827;Parent=Physo120827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 188439 190199 . + . ID=Physo120827.1;Parent=Physo120827;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 188441 190147 . + 0 ID=Physo120827;Parent=Physo120827;rank=1 scaffold_82 . exon 186908 187105 . - . ID=Physo140143.2;Parent=Physo140143;constitutive=1;rank=2 scaffold_82 . exon 187177 187281 . - . ID=Physo140143.1;Parent=Physo140143;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 190412 193936 . + . ID=Physo140145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820046;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 190412 193936 . + . ID=Physo140145;Parent=Physo140145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 190412 193936 . + 0 ID=Physo140145;Parent=Physo140145;rank=1 scaffold_82 . exon 190412 193936 . + . ID=Physo140145.1;Parent=Physo140145;constitutive=1;rank=1 scaffold_82 . repeat_region 205211 205230 . ? . description=trf scaffold_82 ensembl protein_coding_gene 204104 205390 . + . ID=Physo109270;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_820004;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 204104 205390 . + . ID=Physo109270;Parent=Physo109270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 204104 205390 . + . ID=Physo109270.1;Parent=Physo109270;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 204153 205208 . + 0 ID=Physo109270;Parent=Physo109270;rank=1 scaffold_82 ensembl protein_coding_gene 205679 209444 . - . ID=Physo109271;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_820005;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 205679 209444 . - . ID=Physo109271;Parent=Physo109271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 205679 209321 . - . ID=Physo109271.2;Parent=Physo109271;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_82 . CDS 205836 209321 . - 0 ID=Physo109271;Parent=Physo109271;rank=2 scaffold_82 . CDS 209367 209444 . - 0 ID=Physo109271;Parent=Physo109271;rank=1 scaffold_82 ensembl protein_coding_gene 199898 201479 . - . ID=Physo120833;biotype=protein_coding;external_name=estExt_Genewise1.C_820052;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 199898 201479 . - . ID=Physo120833;Parent=Physo120833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 199898 201479 . - . ID=Physo120833.1;Parent=Physo120833;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 200298 201470 . - 0 ID=Physo120833;Parent=Physo120833;rank=1 scaffold_82 ensembl protein_coding_gene 196764 199423 . + . ID=Physo140146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820047;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 196764 199423 . + . ID=Physo140146;Parent=Physo140146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 196764 197002 . + 0 ID=Physo140146;Parent=Physo140146;rank=1 scaffold_82 . exon 196764 197002 . + . ID=Physo140146.1;Parent=Physo140146;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 197097 197159 . + 0 ID=Physo140146;Parent=Physo140146;rank=2 scaffold_82 . exon 197097 197159 . + . ID=Physo140146.2;Parent=Physo140146;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_82 . CDS 197232 197561 . + 0 ID=Physo140146;Parent=Physo140146;rank=3 scaffold_82 . exon 197232 197561 . + . ID=Physo140146.3;Parent=Physo140146;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_82 . CDS 197627 199235 . + 0 ID=Physo140146;Parent=Physo140146;rank=4 scaffold_82 . exon 197627 199423 . + . ID=Physo140146.4;Parent=Physo140146;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_82 . biological_region 207585 207589 0.999 + . logic_name=eponine scaffold_82 . biological_region 208606 208612 0.999 + . logic_name=eponine scaffold_82 . repeat_region 211331 211340 . ? . description=dust scaffold_82 . repeat_region 212305 212312 . ? . description=dust scaffold_82 . repeat_region 212402 212409 . ? . description=dust scaffold_82 . repeat_region 213197 213206 . ? . description=dust scaffold_82 . repeat_region 215314 215369 . ? . description=dust scaffold_82 . biological_region 215660 215663 0.999 + . logic_name=eponine scaffold_82 . biological_region 215776 215778 0.999 + . logic_name=eponine scaffold_82 . biological_region 215785 215791 0.999 - . logic_name=eponine scaffold_82 . biological_region 215842 215844 0.999 + . logic_name=eponine scaffold_82 . exon 209367 209444 . - . ID=Physo109271.1;Parent=Physo109271;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 209895 211583 . - . ID=Physo140150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820051;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 209895 211583 . - . ID=Physo140150;Parent=Physo140150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 209895 211068 . - 0 ID=Physo140150;Parent=Physo140150;rank=3 scaffold_82 . exon 209895 211068 . - . ID=Physo140150.3;Parent=Physo140150;constitutive=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 211094 211286 . - 0 ID=Physo140150;Parent=Physo140150;rank=2 scaffold_82 . exon 211094 211286 . - . ID=Physo140150.2;Parent=Physo140150;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_82 . CDS 211355 211583 . - 0 ID=Physo140150;Parent=Physo140150;rank=1 scaffold_82 . exon 211355 211583 . - . ID=Physo140150.1;Parent=Physo140150;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 212943 214329 . + . ID=Physo140151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820052;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 212943 214329 . + . ID=Physo140151;Parent=Physo140151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 212943 212949 . + 0 ID=Physo140151;Parent=Physo140151;rank=1 scaffold_82 . exon 212943 212949 . + . ID=Physo140151.1;Parent=Physo140151;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 212985 213182 . + 0 ID=Physo140151;Parent=Physo140151;rank=2 scaffold_82 . exon 212985 213182 . + . ID=Physo140151.2;Parent=Physo140151;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 213251 213443 . + 0 ID=Physo140151;Parent=Physo140151;rank=3 scaffold_82 . exon 213251 213443 . + . ID=Physo140151.3;Parent=Physo140151;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_82 . CDS 214125 214274 . + 0 ID=Physo140151;Parent=Physo140151;rank=4 scaffold_82 . exon 214125 214274 . + . ID=Physo140151.4;Parent=Physo140151;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_82 . CDS 214320 214329 . + 0 ID=Physo140151;Parent=Physo140151;rank=5 scaffold_82 . exon 214320 214329 . + . ID=Physo140151.5;Parent=Physo140151;constitutive=1;ensembl_phase=2;rank=5 scaffold_82 ensembl protein_coding_gene 215389 217703 . + . ID=Physo140152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820053;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 215389 217703 . + . ID=Physo140152;Parent=Physo140152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 215389 217626 . + 0 ID=Physo140152;Parent=Physo140152;rank=1 scaffold_82 . exon 215389 217703 . + . ID=Physo140152.1;Parent=Physo140152;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_82 . repeat_region 216838 216896 . ? . description=trf scaffold_82 . repeat_region 217390 217410 . ? . description=trf scaffold_82 . repeat_region 219113 219145 . ? . description=trf scaffold_82 . repeat_region 223481 223521 . ? . description=trf scaffold_82 ensembl protein_coding_gene 217759 219194 . - . ID=Physo140153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820054;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 217759 219194 . - . ID=Physo140153;Parent=Physo140153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 217759 217938 . - 0 ID=Physo140153;Parent=Physo140153;rank=4 scaffold_82 . exon 217759 217938 . - . ID=Physo140153.4;Parent=Physo140153;constitutive=1;rank=4 scaffold_82 . CDS 218018 218344 . - 0 ID=Physo140153;Parent=Physo140153;rank=3 scaffold_82 . exon 218018 218344 . - . ID=Physo140153.3;Parent=Physo140153;constitutive=1;rank=3 scaffold_82 . CDS 218419 218513 . - 0 ID=Physo140153;Parent=Physo140153;rank=2 scaffold_82 . exon 218419 218513 . - . ID=Physo140153.2;Parent=Physo140153;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 218591 219194 . - 0 ID=Physo140153;Parent=Physo140153;rank=1 scaffold_82 . exon 218591 219194 . - . ID=Physo140153.1;Parent=Physo140153;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 219615 220019 . + . ID=Physo140154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820055;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 219615 220019 . + . ID=Physo140154;Parent=Physo140154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 219615 220019 . + 0 ID=Physo140154;Parent=Physo140154;rank=1 scaffold_82 . exon 219615 220019 . + . ID=Physo140154.1;Parent=Physo140154;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 220262 224233 . - . ID=Physo140155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820056;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 220262 224233 . - . ID=Physo140155;Parent=Physo140155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 220262 221113 . - 0 ID=Physo140155;Parent=Physo140155;rank=5 scaffold_82 . exon 220262 221113 . - . ID=Physo140155.5;Parent=Physo140155;constitutive=1;rank=5 scaffold_82 . CDS 221301 221665 . - 0 ID=Physo140155;Parent=Physo140155;rank=4 scaffold_82 . exon 221301 221665 . - . ID=Physo140155.4;Parent=Physo140155;constitutive=1;ensembl_phase=1;rank=4 scaffold_82 . CDS 221718 222191 . - 0 ID=Physo140155;Parent=Physo140155;rank=3 scaffold_82 . exon 221718 222191 . - . ID=Physo140155.3;Parent=Physo140155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_82 . CDS 222236 223395 . - 0 ID=Physo140155;Parent=Physo140155;rank=2 scaffold_82 . exon 222236 223395 . - . ID=Physo140155.2;Parent=Physo140155;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 223818 224233 . - 0 ID=Physo140155;Parent=Physo140155;rank=1 scaffold_82 . exon 223818 224233 . - . ID=Physo140155.1;Parent=Physo140155;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 224525 227994 . + . ID=Physo140156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820057;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 224525 227994 . + . ID=Physo140156;Parent=Physo140156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 224525 225256 . + 0 ID=Physo140156;Parent=Physo140156;rank=1 scaffold_82 . exon 224525 225256 . + . ID=Physo140156.1;Parent=Physo140156;constitutive=1;rank=1 scaffold_82 . CDS 225477 225718 . + 0 ID=Physo140156;Parent=Physo140156;rank=2 scaffold_82 . exon 225477 225718 . + . ID=Physo140156.2;Parent=Physo140156;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_82 . CDS 226035 226297 . + 0 ID=Physo140156;Parent=Physo140156;rank=3 scaffold_82 . exon 226035 226297 . + . ID=Physo140156.3;Parent=Physo140156;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 226367 227994 . + 0 ID=Physo140156;Parent=Physo140156;rank=4 scaffold_82 . biological_region 227088 227088 0.999 - . logic_name=eponine scaffold_82 . biological_region 229658 229660 0.999 - . logic_name=eponine scaffold_82 . repeat_region 231265 231274 . ? . description=dust scaffold_82 . repeat_region 232588 232595 . ? . description=dust scaffold_82 . repeat_region 235737 235746 . ? . description=dust scaffold_82 . exon 226367 227994 . + . ID=Physo140156.4;Parent=Physo140156;constitutive=1;ensembl_phase=1;rank=4 scaffold_82 ensembl protein_coding_gene 228274 230384 . + . ID=Physo140157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820058;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 228274 230384 . + . ID=Physo140157;Parent=Physo140157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 228274 228610 . + 0 ID=Physo140157;Parent=Physo140157;rank=1 scaffold_82 . exon 228274 228610 . + . ID=Physo140157.1;Parent=Physo140157;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 228679 228750 . + 0 ID=Physo140157;Parent=Physo140157;rank=2 scaffold_82 . exon 228679 228750 . + . ID=Physo140157.2;Parent=Physo140157;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 228787 230384 . + 0 ID=Physo140157;Parent=Physo140157;rank=3 scaffold_82 . exon 228787 230384 . + . ID=Physo140157.3;Parent=Physo140157;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 ensembl protein_coding_gene 232886 233314 . + . ID=Physo140158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820059;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 232886 233314 . + . ID=Physo140158;Parent=Physo140158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 232886 233314 . + 0 ID=Physo140158;Parent=Physo140158;rank=1 scaffold_82 . exon 232886 233314 . + . ID=Physo140158.1;Parent=Physo140158;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 235242 237525 . + . ID=Physo140159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820060;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 235242 237525 . + . ID=Physo140159;Parent=Physo140159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 235242 235313 . + 0 ID=Physo140159;Parent=Physo140159;rank=1 scaffold_82 . exon 235242 235313 . + . ID=Physo140159.1;Parent=Physo140159;constitutive=1;rank=1 scaffold_82 . CDS 235393 235734 . + 0 ID=Physo140159;Parent=Physo140159;rank=2 scaffold_82 . exon 235393 235734 . + . ID=Physo140159.2;Parent=Physo140159;constitutive=1;rank=2 scaffold_82 . CDS 235794 236216 . + 0 ID=Physo140159;Parent=Physo140159;rank=3 scaffold_82 . exon 235794 236216 . + . ID=Physo140159.3;Parent=Physo140159;constitutive=1;rank=3 scaffold_82 . CDS 236292 236358 . + 0 ID=Physo140159;Parent=Physo140159;rank=4 scaffold_82 . CDS 236438 237525 . + 0 ID=Physo140159;Parent=Physo140159;rank=5 scaffold_82 . repeat_region 245163 245268 . ? . description=trf scaffold_82 . repeat_region 245214 245308 . ? . description=trf scaffold_82 . exon 236292 236358 . + . ID=Physo140159.4;Parent=Physo140159;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_82 . exon 236438 237525 . + . ID=Physo140159.5;Parent=Physo140159;constitutive=1;ensembl_phase=1;rank=5 scaffold_82 ensembl protein_coding_gene 238263 239537 . - . ID=Physo140160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820061;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 238263 239537 . - . ID=Physo140160;Parent=Physo140160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 238263 239537 . - 0 ID=Physo140160;Parent=Physo140160;rank=1 scaffold_82 . exon 238263 239537 . - . ID=Physo140160.1;Parent=Physo140160;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 242153 247066 . - . ID=Physo140161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820062;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 242153 247066 . - . ID=Physo140161;Parent=Physo140161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 242153 242455 . - 0 ID=Physo140161;Parent=Physo140161;rank=6 scaffold_82 . exon 242153 242455 . - . ID=Physo140161.6;Parent=Physo140161;constitutive=1;rank=6 scaffold_82 . CDS 242587 243627 . - 0 ID=Physo140161;Parent=Physo140161;rank=5 scaffold_82 . exon 242587 243627 . - . ID=Physo140161.5;Parent=Physo140161;constitutive=1;rank=5 scaffold_82 . CDS 243706 244554 . - 0 ID=Physo140161;Parent=Physo140161;rank=4 scaffold_82 . exon 243706 244554 . - . ID=Physo140161.4;Parent=Physo140161;constitutive=1;rank=4 scaffold_82 . CDS 244626 244893 . - 0 ID=Physo140161;Parent=Physo140161;rank=3 scaffold_82 . exon 244626 244893 . - . ID=Physo140161.3;Parent=Physo140161;constitutive=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 245146 245738 . - 0 ID=Physo140161;Parent=Physo140161;rank=2 scaffold_82 . exon 245146 245738 . - . ID=Physo140161.2;Parent=Physo140161;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_82 . CDS 245957 247066 . - 0 ID=Physo140161;Parent=Physo140161;rank=1 scaffold_82 . repeat_region 247066 247120 . ? . description=dust scaffold_82 . repeat_region 249281 249767 . + . description=GypsyPi-1c_I-int scaffold_82 . repeat_region 250358 250583 . + . description=GypsyPi-1c_I-int scaffold_82 . biological_region 251133 251134 0.999 + . logic_name=eponine scaffold_82 . repeat_region 251181 251644 . + . description=GypsyPi-1c_I-int scaffold_82 . repeat_region 252837 255209 . + . description=GypsyPi-1c_I-int scaffold_82 ensembl protein_coding_gene 253122 253856 . + . ID=Physo109272;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_820006;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 253122 253856 . + . ID=Physo109272;Parent=Physo109272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 253122 253856 . + 0 ID=Physo109272;Parent=Physo109272;rank=1 scaffold_82 . exon 253122 253856 . + . ID=Physo109272.1;Parent=Physo109272;constitutive=1;rank=1 scaffold_82 . exon 245957 247066 . - . ID=Physo140161.1;Parent=Physo140161;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 249065 251761 . + . ID=Physo140162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820063;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 249065 251761 . + . ID=Physo140162;Parent=Physo140162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 249065 249567 . + 0 ID=Physo140162;Parent=Physo140162;rank=1 scaffold_82 . exon 249065 249567 . + . ID=Physo140162.1;Parent=Physo140162;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 249594 250036 . + 0 ID=Physo140162;Parent=Physo140162;rank=2 scaffold_82 . exon 249594 250036 . + . ID=Physo140162.2;Parent=Physo140162;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 250185 250390 . + 0 ID=Physo140162;Parent=Physo140162;rank=3 scaffold_82 . exon 250185 250390 . + . ID=Physo140162.3;Parent=Physo140162;constitutive=1;ensembl_phase=1;rank=3 scaffold_82 . CDS 250592 251585 . + 0 ID=Physo140162;Parent=Physo140162;rank=4 scaffold_82 . exon 250592 251585 . + . ID=Physo140162.4;Parent=Physo140162;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_82 . CDS 251754 251761 . + 0 ID=Physo140162;Parent=Physo140162;rank=5 scaffold_82 . exon 251754 251761 . + . ID=Physo140162.5;Parent=Physo140162;constitutive=1;ensembl_phase=1;rank=5 scaffold_82 . repeat_region 259034 259081 . ? . description=trf scaffold_82 . repeat_region 261687 261742 . ? . description=trf scaffold_82 . repeat_region 261880 261922 . ? . description=trf scaffold_82 . repeat_region 264522 264652 . ? . description=trf scaffold_82 ensembl protein_coding_gene 255746 256726 . + . ID=Physo140164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820065;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 255746 256726 . + . ID=Physo140164;Parent=Physo140164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 255746 256574 . + 0 ID=Physo140164;Parent=Physo140164;rank=1 scaffold_82 . exon 255746 256574 . + . ID=Physo140164.1;Parent=Physo140164;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 256719 256726 . + 0 ID=Physo140164;Parent=Physo140164;rank=2 scaffold_82 . exon 256719 256726 . + . ID=Physo140164.2;Parent=Physo140164;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 ensembl protein_coding_gene 259658 260353 . + . ID=Physo140165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820066;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 259658 260353 . + . ID=Physo140165;Parent=Physo140165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 259658 260050 . + 0 ID=Physo140165;Parent=Physo140165;rank=1 scaffold_82 . exon 259658 260050 . + . ID=Physo140165.1;Parent=Physo140165;constitutive=1;rank=1 scaffold_82 . CDS 260098 260219 . + 0 ID=Physo140165;Parent=Physo140165;rank=2 scaffold_82 . exon 260098 260219 . + . ID=Physo140165.2;Parent=Physo140165;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_82 . CDS 260275 260353 . + 0 ID=Physo140165;Parent=Physo140165;rank=3 scaffold_82 . exon 260275 260353 . + . ID=Physo140165.3;Parent=Physo140165;constitutive=1;ensembl_phase=2;rank=3 scaffold_82 ensembl protein_coding_gene 260734 261659 . - . ID=Physo140166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820067;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 260734 261659 . - . ID=Physo140166;Parent=Physo140166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 260734 261323 . - 0 ID=Physo140166;Parent=Physo140166;rank=2 scaffold_82 . exon 260734 261323 . - . ID=Physo140166.2;Parent=Physo140166;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 261530 261659 . - 0 ID=Physo140166;Parent=Physo140166;rank=1 scaffold_82 . exon 261530 261659 . - . ID=Physo140166.1;Parent=Physo140166;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . repeat_region 269389 269396 . ? . description=dust scaffold_82 . biological_region 269795 269795 0.999 - . logic_name=eponine scaffold_82 . repeat_region 275001 275008 . ? . description=dust scaffold_82 . repeat_region 278759 278791 . ? . description=trf scaffold_82 . repeat_region 281206 281278 . ? . description=trf scaffold_82 ensembl protein_coding_gene 276636 278426 . + . ID=Physo140167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820068;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 276636 278426 . + . ID=Physo140167;Parent=Physo140167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 276636 276957 . + 0 ID=Physo140167;Parent=Physo140167;rank=1 scaffold_82 . exon 276636 276957 . + . ID=Physo140167.1;Parent=Physo140167;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 277030 277049 . + 0 ID=Physo140167;Parent=Physo140167;rank=2 scaffold_82 . exon 277030 277049 . + . ID=Physo140167.2;Parent=Physo140167;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 277143 278426 . + 0 ID=Physo140167;Parent=Physo140167;rank=3 scaffold_82 . exon 277143 278426 . + . ID=Physo140167.3;Parent=Physo140167;constitutive=1;rank=3 scaffold_82 ensembl protein_coding_gene 279634 282841 . - . ID=Physo140168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820069;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 279634 282841 . - . ID=Physo140168;Parent=Physo140168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 279634 280702 . - 0 ID=Physo140168;Parent=Physo140168;rank=5 scaffold_82 . exon 279634 280702 . - . ID=Physo140168.5;Parent=Physo140168;constitutive=1;ensembl_phase=2;rank=5 scaffold_82 . CDS 280956 281400 . - 0 ID=Physo140168;Parent=Physo140168;rank=4 scaffold_82 . exon 280956 281400 . - . ID=Physo140168.4;Parent=Physo140168;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_82 . CDS 281465 281573 . - 0 ID=Physo140168;Parent=Physo140168;rank=3 scaffold_82 . exon 281465 281573 . - . ID=Physo140168.3;Parent=Physo140168;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_82 . CDS 281649 282288 . - 0 ID=Physo140168;Parent=Physo140168;rank=2 scaffold_82 . exon 281649 282288 . - . ID=Physo140168.2;Parent=Physo140168;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 282516 282841 . - 0 ID=Physo140168;Parent=Physo140168;rank=1 scaffold_82 . exon 282516 282841 . - . ID=Physo140168.1;Parent=Physo140168;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 284420 286249 . - . ID=Physo140169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820070;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 284420 286249 . - . ID=Physo140169;Parent=Physo140169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 284420 286249 . - 0 ID=Physo140169;Parent=Physo140169;rank=1 scaffold_82 . exon 284420 286249 . - . ID=Physo140169.1;Parent=Physo140169;constitutive=1;rank=1 scaffold_82 . biological_region 285447 285454 0.999 + . logic_name=eponine scaffold_82 . biological_region 285649 285657 0.999 + . logic_name=eponine scaffold_82 . biological_region 285673 285678 0.999 + . logic_name=eponine scaffold_82 . biological_region 285699 285701 0.999 + . logic_name=eponine scaffold_82 . biological_region 285720 285722 0.999 + . logic_name=eponine scaffold_82 . biological_region 285756 285764 0.999 + . logic_name=eponine scaffold_82 . biological_region 285757 285761 0.999 - . logic_name=eponine scaffold_82 . biological_region 285769 285771 0.999 - . logic_name=eponine scaffold_82 . biological_region 285788 285795 0.999 - . logic_name=eponine scaffold_82 . biological_region 285807 285815 0.999 - . logic_name=eponine scaffold_82 . biological_region 285847 285847 0.999 + . logic_name=eponine scaffold_82 . biological_region 285911 285915 0.999 + . logic_name=eponine scaffold_82 . biological_region 285923 285923 0.999 + . logic_name=eponine scaffold_82 . biological_region 285924 285927 0.999 - . logic_name=eponine scaffold_82 . biological_region 285945 285951 0.999 - . logic_name=eponine scaffold_82 . biological_region 285979 285980 0.999 + . logic_name=eponine scaffold_82 . biological_region 286022 286023 0.999 - . logic_name=eponine scaffold_82 . biological_region 286045 286049 0.999 - . logic_name=eponine scaffold_82 . biological_region 286068 286068 0.999 + . logic_name=eponine scaffold_82 . repeat_region 286132 286195 . ? . description=dust scaffold_82 . biological_region 286141 286143 0.999 + . logic_name=eponine scaffold_82 . biological_region 286149 286150 0.999 - . logic_name=eponine scaffold_82 . biological_region 286719 286724 0.999 + . logic_name=eponine scaffold_82 . biological_region 286802 286804 0.999 - . logic_name=eponine scaffold_82 . biological_region 286821 286827 0.999 - . logic_name=eponine scaffold_82 . biological_region 287746 287751 0.999 - . logic_name=eponine scaffold_82 . biological_region 289025 289026 0.999 + . logic_name=eponine scaffold_82 . biological_region 289117 289119 0.999 + . logic_name=eponine scaffold_82 . biological_region 289285 289287 0.999 + . logic_name=eponine scaffold_82 . biological_region 289309 289313 0.999 + . logic_name=eponine scaffold_82 . biological_region 289570 289574 0.999 + . logic_name=eponine scaffold_82 . biological_region 289634 289637 0.999 - . logic_name=eponine scaffold_82 . repeat_region 291573 291755 . + . description=GypsyPi-1c_LTR scaffold_82 . repeat_region 291756 292066 . + . description=GypsyPi-1c_I-int scaffold_82 . biological_region 292000 292002 0.999 + . logic_name=eponine scaffold_82 . repeat_region 292059 297829 . + . description=GypsyPi-1c_I-int scaffold_82 ensembl protein_coding_gene 286374 287922 . + . ID=Physo140170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820071;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 286374 287922 . + . ID=Physo140170;Parent=Physo140170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 286374 287819 . + 0 ID=Physo140170;Parent=Physo140170;rank=1 scaffold_82 . exon 286374 287819 . + . ID=Physo140170.1;Parent=Physo140170;constitutive=1;rank=1 scaffold_82 . CDS 287848 287922 . + 0 ID=Physo140170;Parent=Physo140170;rank=2 scaffold_82 . exon 287848 287922 . + . ID=Physo140170.2;Parent=Physo140170;constitutive=1;rank=2 scaffold_82 ensembl protein_coding_gene 288376 290047 . - . ID=Physo140171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820072;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 288376 290047 . - . ID=Physo140171;Parent=Physo140171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 288376 288423 . - 0 ID=Physo140171;Parent=Physo140171;rank=4 scaffold_82 . exon 288376 288423 . - . ID=Physo140171.4;Parent=Physo140171;constitutive=1;rank=4 scaffold_82 . CDS 288490 289479 . - 0 ID=Physo140171;Parent=Physo140171;rank=3 scaffold_82 . exon 288490 289479 . - . ID=Physo140171.3;Parent=Physo140171;constitutive=1;rank=3 scaffold_82 . CDS 289502 289570 . - 0 ID=Physo140171;Parent=Physo140171;rank=2 scaffold_82 . exon 289502 289570 . - . ID=Physo140171.2;Parent=Physo140171;constitutive=1;rank=2 scaffold_82 . CDS 289940 290047 . - 0 ID=Physo140171;Parent=Physo140171;rank=1 scaffold_82 . exon 289940 290047 . - . ID=Physo140171.1;Parent=Physo140171;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 291843 296055 . + . ID=Physo140172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820073;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 291843 296055 . + . ID=Physo140172;Parent=Physo140172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 291843 292080 . + 0 ID=Physo140172;Parent=Physo140172;rank=1 scaffold_82 . exon 291843 292080 . + . ID=Physo140172.1;Parent=Physo140172;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 292233 292806 . + 0 ID=Physo140172;Parent=Physo140172;rank=2 scaffold_82 . exon 292233 292806 . + . ID=Physo140172.2;Parent=Physo140172;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_82 . CDS 292840 292877 . + 0 ID=Physo140172;Parent=Physo140172;rank=3 scaffold_82 . exon 292840 292877 . + . ID=Physo140172.3;Parent=Physo140172;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 292963 293935 . + 0 ID=Physo140172;Parent=Physo140172;rank=4 scaffold_82 . exon 292963 293935 . + . ID=Physo140172.4;Parent=Physo140172;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_82 . CDS 293972 294054 . + 0 ID=Physo140172;Parent=Physo140172;rank=5 scaffold_82 . exon 293972 294054 . + . ID=Physo140172.5;Parent=Physo140172;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_82 . CDS 294256 296000 . + 0 ID=Physo140172;Parent=Physo140172;rank=6 scaffold_82 . exon 294256 296000 . + . ID=Physo140172.6;Parent=Physo140172;constitutive=1;ensembl_phase=1;rank=6 scaffold_82 . CDS 296047 296055 . + 0 ID=Physo140172;Parent=Physo140172;rank=7 scaffold_82 . repeat_region 299725 299816 . ? . description=trf scaffold_82 . repeat_region 299755 299801 . ? . description=trf scaffold_82 . repeat_region 299763 299791 . ? . description=trf scaffold_82 . repeat_region 299780 299819 . ? . description=trf scaffold_82 ensembl protein_coding_gene 303518 304412 . + . ID=Physo109273;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_820007;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 303518 304412 . + . ID=Physo109273;Parent=Physo109273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 303518 304412 . + . ID=Physo109273.1;Parent=Physo109273;constitutive=1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 303540 304412 . + 0 ID=Physo109273;Parent=Physo109273;rank=1 scaffold_82 . exon 296047 296055 . + . ID=Physo140172.7;Parent=Physo140172;constitutive=1;rank=7 scaffold_82 ensembl protein_coding_gene 296338 298534 . - . ID=Physo140173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820074;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 296338 298534 . - . ID=Physo140173;Parent=Physo140173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 296338 296915 . - 0 ID=Physo140173;Parent=Physo140173;rank=2 scaffold_82 . exon 296338 296915 . - . ID=Physo140173.2;Parent=Physo140173;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 297157 298534 . - 0 ID=Physo140173;Parent=Physo140173;rank=1 scaffold_82 . exon 297157 298534 . - . ID=Physo140173.1;Parent=Physo140173;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 300461 303300 . - . ID=Physo140174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820075;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 300461 303300 . - . ID=Physo140174;Parent=Physo140174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 300461 303035 . - . ID=Physo140174.2;Parent=Physo140174;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_82 . CDS 300555 303035 . - 0 ID=Physo140174;Parent=Physo140174;rank=2 scaffold_82 . CDS 303169 303300 . - 0 ID=Physo140174;Parent=Physo140174;rank=1 scaffold_82 . exon 303169 303300 . - . ID=Physo140174.1;Parent=Physo140174;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 304436 306430 . - . ID=Physo140176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820077;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 304436 306430 . - . ID=Physo140176;Parent=Physo140176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 304436 305952 . - . ID=Physo140176.4;Parent=Physo140176;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_82 . CDS 304488 305952 . - 0 ID=Physo140176;Parent=Physo140176;rank=4 scaffold_82 . CDS 306032 306104 . - 0 ID=Physo140176;Parent=Physo140176;rank=3 scaffold_82 . CDS 306180 306231 . - 0 ID=Physo140176;Parent=Physo140176;rank=2 scaffold_82 . CDS 306290 306430 . - 0 ID=Physo140176;Parent=Physo140176;rank=1 scaffold_82 . biological_region 309488 309491 0.999 - . logic_name=eponine scaffold_82 . biological_region 310163 310168 0.999 - . logic_name=eponine scaffold_82 . biological_region 310267 310270 0.999 - . logic_name=eponine scaffold_82 . biological_region 314135 314137 0.999 + . logic_name=eponine scaffold_82 . biological_region 314623 314626 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 313397 313622 . + . ID=Physo120787;biotype=protein_coding;external_name=estExt_Genewise1.C_820006;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 313397 313622 . + . ID=Physo120787;Parent=Physo120787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . exon 313397 313622 . + . ID=Physo120787.1;Parent=Physo120787;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_82 . CDS 313410 313502 . + 0 ID=Physo120787;Parent=Physo120787;rank=1 scaffold_82 ensembl protein_coding_gene 313616 313825 . + . ID=Physo120789;biotype=protein_coding;external_name=estExt_Genewise1.C_820008;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 313616 313825 . + . ID=Physo120789;Parent=Physo120789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 313616 313825 . + 0 ID=Physo120789;Parent=Physo120789;rank=1 scaffold_82 . exon 313616 313825 . + . ID=Physo120789.1;Parent=Physo120789;constitutive=1;rank=1 scaffold_82 . exon 306032 306104 . - . ID=Physo140176.3;Parent=Physo140176;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_82 . exon 306180 306231 . - . ID=Physo140176.2;Parent=Physo140176;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_82 . exon 306290 306430 . - . ID=Physo140176.1;Parent=Physo140176;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 309213 310967 . + . ID=Physo140177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820078;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 309213 310967 . + . ID=Physo140177;Parent=Physo140177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 309213 310967 . + 0 ID=Physo140177;Parent=Physo140177;rank=1 scaffold_82 . exon 309213 310967 . + . ID=Physo140177.1;Parent=Physo140177;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 312055 313103 . - . ID=Physo140178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820079;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 312055 313103 . - . ID=Physo140178;Parent=Physo140178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 312055 312221 . - 0 ID=Physo140178;Parent=Physo140178;rank=4 scaffold_82 . exon 312055 312221 . - . ID=Physo140178.4;Parent=Physo140178;constitutive=1;ensembl_phase=1;rank=4 scaffold_82 . CDS 312279 312316 . - 0 ID=Physo140178;Parent=Physo140178;rank=3 scaffold_82 . exon 312279 312316 . - . ID=Physo140178.3;Parent=Physo140178;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_82 . CDS 312512 312692 . - 0 ID=Physo140178;Parent=Physo140178;rank=2 scaffold_82 . exon 312512 312692 . - . ID=Physo140178.2;Parent=Physo140178;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_82 . CDS 312752 313103 . - 0 ID=Physo140178;Parent=Physo140178;rank=1 scaffold_82 . exon 312752 313103 . - . ID=Physo140178.1;Parent=Physo140178;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 313892 315638 . - . ID=Physo158123;biotype=protein_coding;external_name=C_scaffold_82000019;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 313892 315638 . - . ID=Physo158123;Parent=Physo158123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 313892 313894 . - 0 ID=Physo158123;Parent=Physo158123;rank=3 scaffold_82 . exon 313892 313894 . - . ID=Physo158123.3;Parent=Physo158123;constitutive=1;rank=3 scaffold_82 . CDS 314015 314495 . - 0 ID=Physo158123;Parent=Physo158123;rank=2 scaffold_82 . exon 314015 314495 . - . ID=Physo158123.2;Parent=Physo158123;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 315094 315638 . - 0 ID=Physo158123;Parent=Physo158123;rank=1 scaffold_82 . repeat_region 316431 316439 . ? . description=dust scaffold_82 . repeat_region 321945 321967 . ? . description=trf scaffold_82 . repeat_region 323193 323237 . ? . description=dust scaffold_82 . repeat_region 323314 323322 . ? . description=dust scaffold_82 . repeat_region 323876 323883 . ? . description=dust scaffold_82 ensembl protein_coding_gene 319492 321693 . - . ID=Physo140184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820085;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 319492 321693 . - . ID=Physo140184;Parent=Physo140184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 319492 321693 . - 0 ID=Physo140184;Parent=Physo140184;rank=1 scaffold_82 . exon 319492 321693 . - . ID=Physo140184.1;Parent=Physo140184;constitutive=1;rank=1 scaffold_82 . exon 315094 315638 . - . ID=Physo158123.1;Parent=Physo158123;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 315732 316280 . - . ID=Physo158125;biotype=protein_coding;external_name=C_scaffold_82000021;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 315732 316280 . - . ID=Physo158125;Parent=Physo158125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 315732 316280 . - 0 ID=Physo158125;Parent=Physo158125;rank=1 scaffold_82 . exon 315732 316280 . - . ID=Physo158125.1;Parent=Physo158125;constitutive=1;rank=1 scaffold_82 ensembl protein_coding_gene 316866 319399 . + . ID=Physo158128;biotype=protein_coding;external_name=C_scaffold_82000024;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 316866 319399 . + . ID=Physo158128;Parent=Physo158128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 316866 317055 . + 0 ID=Physo158128;Parent=Physo158128;rank=1 scaffold_82 . exon 316866 317055 . + . ID=Physo158128.1;Parent=Physo158128;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 317126 317633 . + 0 ID=Physo158128;Parent=Physo158128;rank=2 scaffold_82 . exon 317126 317633 . + . ID=Physo158128.2;Parent=Physo158128;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_82 . CDS 317876 318703 . + 0 ID=Physo158128;Parent=Physo158128;rank=3 scaffold_82 . exon 317876 318703 . + . ID=Physo158128.3;Parent=Physo158128;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_82 . CDS 318781 318871 . + 0 ID=Physo158128;Parent=Physo158128;rank=4 scaffold_82 . exon 318781 318871 . + . ID=Physo158128.4;Parent=Physo158128;constitutive=1;ensembl_phase=2;rank=4 scaffold_82 . CDS 318960 319073 . + 0 ID=Physo158128;Parent=Physo158128;rank=5 scaffold_82 . exon 318960 319073 . + . ID=Physo158128.5;Parent=Physo158128;constitutive=1;rank=5 scaffold_82 . CDS 319148 319399 . + 0 ID=Physo158128;Parent=Physo158128;rank=6 scaffold_82 . exon 319148 319399 . + . ID=Physo158128.6;Parent=Physo158128;constitutive=1;rank=6 scaffold_82 . biological_region 324662 324664 0.999 - . logic_name=eponine scaffold_82 . biological_region 325637 325639 0.999 - . logic_name=eponine scaffold_82 . biological_region 325811 325812 0.999 + . logic_name=eponine scaffold_82 . biological_region 331495 331498 0.999 - . logic_name=eponine scaffold_82 . biological_region 331660 331664 0.999 - . logic_name=eponine scaffold_82 . biological_region 334038 334043 0.999 + . logic_name=eponine scaffold_82 . biological_region 334039 334039 0.999 - . logic_name=eponine scaffold_82 . biological_region 334122 334124 0.999 + . logic_name=eponine scaffold_82 . biological_region 334126 334132 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 327329 328173 . + . ID=Physo140185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820086;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 327329 328173 . + . ID=Physo140185;Parent=Physo140185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 327329 327904 . + 0 ID=Physo140185;Parent=Physo140185;rank=1 scaffold_82 . exon 327329 327904 . + . ID=Physo140185.1;Parent=Physo140185;constitutive=1;rank=1 scaffold_82 . CDS 328057 328173 . + 0 ID=Physo140185;Parent=Physo140185;rank=2 scaffold_82 . exon 328057 328173 . + . ID=Physo140185.2;Parent=Physo140185;constitutive=1;rank=2 scaffold_82 ensembl protein_coding_gene 330037 331688 . + . ID=Physo140186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820087;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 330037 331688 . + . ID=Physo140186;Parent=Physo140186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 330037 331162 . + 0 ID=Physo140186;Parent=Physo140186;rank=1 scaffold_82 . exon 330037 331162 . + . ID=Physo140186.1;Parent=Physo140186;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 . CDS 331229 331455 . + 0 ID=Physo140186;Parent=Physo140186;rank=2 scaffold_82 . exon 331229 331455 . + . ID=Physo140186.2;Parent=Physo140186;constitutive=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 331527 331688 . + 0 ID=Physo140186;Parent=Physo140186;rank=3 scaffold_82 . exon 331527 331688 . + . ID=Physo140186.3;Parent=Physo140186;constitutive=1;rank=3 scaffold_82 . repeat_region 334544 334593 . ? . description=dust scaffold_82 . repeat_region 336981 337078 . ? . description=trf scaffold_82 . repeat_region 339860 339869 . ? . description=dust scaffold_82 . repeat_region 342885 342892 . ? . description=dust scaffold_82 . repeat_region 343458 343467 . ? . description=dust scaffold_82 ensembl protein_coding_gene 335369 338233 . - . ID=Physo140187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820088;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 335369 338233 . - . ID=Physo140187;Parent=Physo140187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 335369 336865 . - 0 ID=Physo140187;Parent=Physo140187;rank=3 scaffold_82 . exon 335369 336865 . - . ID=Physo140187.3;Parent=Physo140187;constitutive=1;rank=3 scaffold_82 . CDS 337092 337416 . - 0 ID=Physo140187;Parent=Physo140187;rank=2 scaffold_82 . exon 337092 337416 . - . ID=Physo140187.2;Parent=Physo140187;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 337521 338233 . - 0 ID=Physo140187;Parent=Physo140187;rank=1 scaffold_82 . exon 337521 338233 . - . ID=Physo140187.1;Parent=Physo140187;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 338610 339857 . - . ID=Physo140188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820089;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 338610 339857 . - . ID=Physo140188;Parent=Physo140188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 338610 339857 . - 0 ID=Physo140188;Parent=Physo140188;rank=1 scaffold_82 . exon 338610 339857 . - . ID=Physo140188.1;Parent=Physo140188;constitutive=1;rank=1 scaffold_82 . biological_region 349647 349650 0.999 + . logic_name=eponine scaffold_82 . biological_region 349736 349739 0.999 - . logic_name=eponine scaffold_82 . biological_region 349761 349769 0.999 - . logic_name=eponine scaffold_82 . biological_region 349765 349767 0.999 + . logic_name=eponine scaffold_82 . biological_region 350313 350317 0.999 + . logic_name=eponine scaffold_82 . biological_region 350773 350777 0.999 + . logic_name=eponine scaffold_82 . repeat_region 351527 353840 . - . description=GypsyPi-1c_I-int scaffold_82 . biological_region 353620 353621 0.999 - . logic_name=eponine scaffold_82 ensembl protein_coding_gene 349401 350915 . + . ID=Physo140189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820090;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 349401 350915 . + . ID=Physo140189;Parent=Physo140189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 349401 349897 . + 0 ID=Physo140189;Parent=Physo140189;rank=1 scaffold_82 . exon 349401 349897 . + . ID=Physo140189.1;Parent=Physo140189;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 . CDS 350192 350387 . + 0 ID=Physo140189;Parent=Physo140189;rank=2 scaffold_82 . exon 350192 350387 . + . ID=Physo140189.2;Parent=Physo140189;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . CDS 350428 350433 . + 0 ID=Physo140189;Parent=Physo140189;rank=3 scaffold_82 . exon 350428 350433 . + . ID=Physo140189.3;Parent=Physo140189;constitutive=1;rank=3 scaffold_82 . CDS 350600 350656 . + 0 ID=Physo140189;Parent=Physo140189;rank=4 scaffold_82 . exon 350600 350656 . + . ID=Physo140189.4;Parent=Physo140189;constitutive=1;rank=4 scaffold_82 . CDS 350727 350915 . + 0 ID=Physo140189;Parent=Physo140189;rank=5 scaffold_82 . exon 350727 350915 . + . ID=Physo140189.5;Parent=Physo140189;constitutive=1;rank=5 scaffold_82 ensembl protein_coding_gene 351379 355182 . - . ID=Physo140190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820091;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 351379 355182 . - . ID=Physo140190;Parent=Physo140190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 351379 351492 . - 0 ID=Physo140190;Parent=Physo140190;rank=7 scaffold_82 . exon 351379 351492 . - . ID=Physo140190.7;Parent=Physo140190;constitutive=1;rank=7 scaffold_82 . CDS 351534 352240 . - 0 ID=Physo140190;Parent=Physo140190;rank=6 scaffold_82 . exon 351534 352240 . - . ID=Physo140190.6;Parent=Physo140190;constitutive=1;ensembl_phase=1;rank=6 scaffold_82 . CDS 352277 353369 . - 0 ID=Physo140190;Parent=Physo140190;rank=5 scaffold_82 . exon 352277 353369 . - . ID=Physo140190.5;Parent=Physo140190;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_82 . CDS 353418 353484 . - 0 ID=Physo140190;Parent=Physo140190;rank=4 scaffold_82 . exon 353418 353484 . - . ID=Physo140190.4;Parent=Physo140190;constitutive=1;ensembl_phase=2;rank=4 scaffold_82 . CDS 353505 353814 . - 0 ID=Physo140190;Parent=Physo140190;rank=3 scaffold_82 . exon 353505 353814 . - . ID=Physo140190.3;Parent=Physo140190;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_82 . CDS 353838 354428 . - 0 ID=Physo140190;Parent=Physo140190;rank=2 scaffold_82 . exon 353838 354428 . - . ID=Physo140190.2;Parent=Physo140190;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_82 . CDS 354639 355182 . - 0 ID=Physo140190;Parent=Physo140190;rank=1 scaffold_82 . repeat_region 357566 357573 . ? . description=dust scaffold_82 . exon 354639 355182 . - . ID=Physo140190.1;Parent=Physo140190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_82 ensembl protein_coding_gene 357098 360165 . + . ID=Physo140191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820092;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 357098 360165 . + . ID=Physo140191;Parent=Physo140191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 357098 357169 . + 0 ID=Physo140191;Parent=Physo140191;rank=1 scaffold_82 . exon 357098 357169 . + . ID=Physo140191.1;Parent=Physo140191;constitutive=1;rank=1 scaffold_82 . CDS 357246 357429 . + 0 ID=Physo140191;Parent=Physo140191;rank=2 scaffold_82 . exon 357246 357429 . + . ID=Physo140191.2;Parent=Physo140191;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_82 . CDS 357492 358101 . + 0 ID=Physo140191;Parent=Physo140191;rank=3 scaffold_82 . exon 357492 358101 . + . ID=Physo140191.3;Parent=Physo140191;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_82 . CDS 358173 358731 . + 0 ID=Physo140191;Parent=Physo140191;rank=4 scaffold_82 . exon 358173 358731 . + . ID=Physo140191.4;Parent=Physo140191;constitutive=1;ensembl_phase=2;rank=4 scaffold_82 . CDS 358850 359383 . + 0 ID=Physo140191;Parent=Physo140191;rank=5 scaffold_82 . exon 358850 359383 . + . ID=Physo140191.5;Parent=Physo140191;constitutive=1;rank=5 scaffold_82 . CDS 359773 360165 . + 0 ID=Physo140191;Parent=Physo140191;rank=6 scaffold_82 . exon 359773 360165 . + . ID=Physo140191.6;Parent=Physo140191;constitutive=1;rank=6 scaffold_82 ensembl protein_coding_gene 363328 366533 . - . ID=Physo140192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820093;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 363328 366533 . - . ID=Physo140192;Parent=Physo140192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 363328 363669 . - 0 ID=Physo140192;Parent=Physo140192;rank=4 scaffold_82 . exon 363328 363669 . - . ID=Physo140192.4;Parent=Physo140192;constitutive=1;rank=4 scaffold_82 . CDS 364171 365478 . - 0 ID=Physo140192;Parent=Physo140192;rank=3 scaffold_82 . CDS 365500 366190 . - 0 ID=Physo140192;Parent=Physo140192;rank=2 scaffold_82 . CDS 366325 366533 . - 0 ID=Physo140192;Parent=Physo140192;rank=1 scaffold_82 . biological_region 365766 365768 0.999 - . logic_name=eponine scaffold_82 . biological_region 366734 366734 0.999 + . logic_name=eponine scaffold_82 . biological_region 366794 366800 0.999 - . logic_name=eponine scaffold_82 . biological_region 366821 366822 0.999 + . logic_name=eponine scaffold_82 . biological_region 366851 366854 0.999 + . logic_name=eponine scaffold_82 . biological_region 368160 368167 0.999 + . logic_name=eponine scaffold_82 . biological_region 368856 368857 0.999 + . logic_name=eponine scaffold_82 . biological_region 368981 368984 0.999 + . logic_name=eponine scaffold_82 . biological_region 369873 369873 0.999 + . logic_name=eponine scaffold_82 . repeat_region 370004 370047 . ? . description=trf scaffold_82 . repeat_region 370014 370051 . ? . description=trf scaffold_82 . exon 364171 365478 . - . ID=Physo140192.3;Parent=Physo140192;constitutive=1;rank=3 scaffold_82 . exon 365500 366190 . - . ID=Physo140192.2;Parent=Physo140192;constitutive=1;ensembl_phase=2;rank=2 scaffold_82 . exon 366325 366533 . - . ID=Physo140192.1;Parent=Physo140192;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_82 ensembl protein_coding_gene 367614 370004 . - . ID=Physo140193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_820094;logic_name=jgi_physo1_1 scaffold_82 ensembl transcript 367614 370004 . - . ID=Physo140193;Parent=Physo140193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_82 . CDS 367614 369265 . - 0 ID=Physo140193;Parent=Physo140193;rank=4 scaffold_82 . exon 367614 369265 . - . ID=Physo140193.4;Parent=Physo140193;constitutive=1;ensembl_phase=1;rank=4 scaffold_82 . CDS 369286 369418 . - 0 ID=Physo140193;Parent=Physo140193;rank=3 scaffold_82 . exon 369286 369418 . - . ID=Physo140193.3;Parent=Physo140193;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_82 . CDS 369491 369610 . - 0 ID=Physo140193;Parent=Physo140193;rank=2 scaffold_82 . exon 369491 369610 . - . ID=Physo140193.2;Parent=Physo140193;constitutive=1;rank=2 scaffold_82 . CDS 369633 370004 . - 0 ID=Physo140193;Parent=Physo140193;rank=1 scaffold_82 . exon 369633 370004 . - . ID=Physo140193.1;Parent=Physo140193;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_80 1 377193 scaffold_80 . repeat_region 9101 9141 . ? . description=trf scaffold_80 ensembl protein_coding_gene 154 639 . - . ID=Physo109247;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_800001;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 154 639 . - . ID=Physo109247;Parent=Physo109247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 154 639 . - 0 ID=Physo109247;Parent=Physo109247;rank=1 scaffold_80 . exon 154 639 . - . ID=Physo109247.1;Parent=Physo109247;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 1120 1377 . - . ID=Physo120614;biotype=protein_coding;external_name=estExt_Genewise1.C_800030;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 1120 1377 . - . ID=Physo120614;Parent=Physo120614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 1120 1338 . - 0 ID=Physo120614;Parent=Physo120614;rank=1 scaffold_80 . exon 1120 1377 . - . ID=Physo120614.1;Parent=Physo120614;constitutive=1;ensembl_phase=-1;rank=1 scaffold_80 ensembl protein_coding_gene 3069 4588 . - . ID=Physo139919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800003;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 3069 4588 . - . ID=Physo139919;Parent=Physo139919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 3069 3073 . - 0 ID=Physo139919;Parent=Physo139919;rank=2 scaffold_80 . exon 3069 3073 . - . ID=Physo139919.2;Parent=Physo139919;constitutive=1;ensembl_phase=1;rank=2 scaffold_80 . CDS 3160 4588 . - 0 ID=Physo139919;Parent=Physo139919;rank=1 scaffold_80 . exon 3160 4588 . - . ID=Physo139919.1;Parent=Physo139919;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 ensembl protein_coding_gene 7270 11335 . - . ID=Physo139920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800004;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 7270 11335 . - . ID=Physo139920;Parent=Physo139920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 7270 7755 . - 0 ID=Physo139920;Parent=Physo139920;rank=5 scaffold_80 . exon 7270 7755 . - . ID=Physo139920.5;Parent=Physo139920;constitutive=1;rank=5 scaffold_80 . CDS 8047 9414 . - 0 ID=Physo139920;Parent=Physo139920;rank=4 scaffold_80 . exon 8047 9414 . - . ID=Physo139920.4;Parent=Physo139920;constitutive=1;rank=4 scaffold_80 . CDS 9490 10005 . - 0 ID=Physo139920;Parent=Physo139920;rank=3 scaffold_80 . exon 9490 10005 . - . ID=Physo139920.3;Parent=Physo139920;constitutive=1;rank=3 scaffold_80 . CDS 10066 10636 . - 0 ID=Physo139920;Parent=Physo139920;rank=2 scaffold_80 . CDS 10818 11335 . - 0 ID=Physo139920;Parent=Physo139920;rank=1 scaffold_80 . repeat_region 13505 13568 . ? . description=dust scaffold_80 . repeat_region 19551 19845 . + . description=GypsyPi-1c_LTR scaffold_80 . repeat_region 19846 20185 . + . description=GypsyPi-1c_I-int scaffold_80 . exon 10066 10636 . - . ID=Physo139920.2;Parent=Physo139920;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . exon 10818 11335 . - . ID=Physo139920.1;Parent=Physo139920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 15470 15802 . - . ID=Physo139921;biotype=protein_coding;description=PsAvh7c [Source:UniProtKB/TrEMBL%3BAcc:E0W5F9];external_name=estExt_fgenesh1_pg.C_800005;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 15470 15802 . - . ID=Physo139921;Parent=Physo139921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 15470 15802 . - 0 ID=Physo139921;Parent=Physo139921;rank=1 scaffold_80 . exon 15470 15802 . - . ID=Physo139921.1;Parent=Physo139921;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 17895 19393 . - . ID=Physo139922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800006;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 17895 19393 . - . ID=Physo139922;Parent=Physo139922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 17895 19085 . - 0 ID=Physo139922;Parent=Physo139922;rank=2 scaffold_80 . exon 17895 19085 . - . ID=Physo139922.2;Parent=Physo139922;constitutive=1;rank=2 scaffold_80 . CDS 19148 19393 . - 0 ID=Physo139922;Parent=Physo139922;rank=1 scaffold_80 . exon 19148 19393 . - . ID=Physo139922.1;Parent=Physo139922;constitutive=1;rank=1 scaffold_80 . biological_region 20090 20092 0.999 + . logic_name=eponine scaffold_80 . repeat_region 28260 28286 . ? . description=trf scaffold_80 ensembl protein_coding_gene 26979 27311 . + . ID=Physo139923;biotype=protein_coding;description=PsAvh7b1PsAvh7b2 [Source:UniProtKB/TrEMBL%3BAcc:E0W5G0];external_name=estExt_fgenesh1_pg.C_800007;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 26979 27311 . + . ID=Physo139923;Parent=Physo139923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 26979 27311 . + 0 ID=Physo139923;Parent=Physo139923;rank=1 scaffold_80 . exon 26979 27311 . + . ID=Physo139923.1;Parent=Physo139923;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 28975 29443 . + . ID=Physo139924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800008;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 28975 29443 . + . ID=Physo139924;Parent=Physo139924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 28975 29157 . + 0 ID=Physo139924;Parent=Physo139924;rank=1 scaffold_80 . exon 28975 29157 . + . ID=Physo139924.1;Parent=Physo139924;constitutive=1;rank=1 scaffold_80 . CDS 29286 29405 . + 0 ID=Physo139924;Parent=Physo139924;rank=2 scaffold_80 . exon 29286 29443 . + . ID=Physo139924.2;Parent=Physo139924;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_80 . repeat_region 37353 37360 . ? . description=dust scaffold_80 . repeat_region 39433 39440 . ? . description=dust scaffold_80 . repeat_region 39464 39473 . ? . description=dust scaffold_80 ensembl protein_coding_gene 42918 45217 . + . ID=Physo139925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800009;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 42918 45217 . + . ID=Physo139925;Parent=Physo139925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 42918 43098 . + 0 ID=Physo139925;Parent=Physo139925;rank=1 scaffold_80 . exon 42918 43098 . + . ID=Physo139925.1;Parent=Physo139925;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . CDS 43148 43415 . + 0 ID=Physo139925;Parent=Physo139925;rank=2 scaffold_80 . exon 43148 43415 . + . ID=Physo139925.2;Parent=Physo139925;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_80 . CDS 43448 43615 . + 0 ID=Physo139925;Parent=Physo139925;rank=3 scaffold_80 . exon 43448 43615 . + . ID=Physo139925.3;Parent=Physo139925;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 43685 43781 . + 0 ID=Physo139925;Parent=Physo139925;rank=4 scaffold_80 . exon 43685 43781 . + . ID=Physo139925.4;Parent=Physo139925;constitutive=1;ensembl_phase=2;rank=4 scaffold_80 . CDS 43809 44847 . + 0 ID=Physo139925;Parent=Physo139925;rank=5 scaffold_80 . exon 43809 44847 . + . ID=Physo139925.5;Parent=Physo139925;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_80 . CDS 45201 45217 . + 0 ID=Physo139925;Parent=Physo139925;rank=6 scaffold_80 . exon 45201 45217 . + . ID=Physo139925.6;Parent=Physo139925;constitutive=1;ensembl_phase=1;rank=6 scaffold_80 ensembl protein_coding_gene 46058 48269 . + . ID=Physo139926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800010;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 46058 48269 . + . ID=Physo139926;Parent=Physo139926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 46058 46696 . + 0 ID=Physo139926;Parent=Physo139926;rank=1 scaffold_80 . exon 46058 46696 . + . ID=Physo139926.1;Parent=Physo139926;constitutive=1;rank=1 scaffold_80 . CDS 46753 47024 . + 0 ID=Physo139926;Parent=Physo139926;rank=2 scaffold_80 . exon 46753 47024 . + . ID=Physo139926.2;Parent=Physo139926;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_80 . CDS 47102 47302 . + 0 ID=Physo139926;Parent=Physo139926;rank=3 scaffold_80 . exon 47102 47302 . + . ID=Physo139926.3;Parent=Physo139926;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 48000 48146 . + 0 ID=Physo139926;Parent=Physo139926;rank=4 scaffold_80 . exon 48000 48146 . + . ID=Physo139926.4;Parent=Physo139926;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_80 . CDS 48263 48269 . + 0 ID=Physo139926;Parent=Physo139926;rank=5 scaffold_80 . exon 48263 48269 . + . ID=Physo139926.5;Parent=Physo139926;constitutive=1;ensembl_phase=2;rank=5 scaffold_80 ensembl protein_coding_gene 48726 52029 . - . ID=Physo139927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800011;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 48726 52029 . - . ID=Physo139927;Parent=Physo139927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 48726 49008 . - 0 ID=Physo139927;Parent=Physo139927;rank=10 scaffold_80 . exon 48726 49008 . - . ID=Physo139927.10;Parent=Physo139927;constitutive=1;ensembl_phase=2;rank=10 scaffold_80 . CDS 49065 49312 . - 0 ID=Physo139927;Parent=Physo139927;rank=9 scaffold_80 . exon 49065 49312 . - . ID=Physo139927.9;Parent=Physo139927;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_80 . CDS 49391 49465 . - 0 ID=Physo139927;Parent=Physo139927;rank=8 scaffold_80 . exon 49391 49465 . - . ID=Physo139927.8;Parent=Physo139927;constitutive=1;rank=8 scaffold_80 . CDS 49518 49702 . - 0 ID=Physo139927;Parent=Physo139927;rank=7 scaffold_80 . exon 49518 49702 . - . ID=Physo139927.7;Parent=Physo139927;constitutive=1;ensembl_phase=1;rank=7 scaffold_80 . CDS 49767 50185 . - 0 ID=Physo139927;Parent=Physo139927;rank=6 scaffold_80 . CDS 50328 51027 . - 0 ID=Physo139927;Parent=Physo139927;rank=5 scaffold_80 . CDS 51126 51179 . - 0 ID=Physo139927;Parent=Physo139927;rank=4 scaffold_80 . CDS 51203 51329 . - 0 ID=Physo139927;Parent=Physo139927;rank=3 scaffold_80 . CDS 51353 51617 . - 0 ID=Physo139927;Parent=Physo139927;rank=2 scaffold_80 . CDS 51650 52029 . - 0 ID=Physo139927;Parent=Physo139927;rank=1 scaffold_80 . repeat_region 50281 50288 . ? . description=dust scaffold_80 . repeat_region 51427 51529 . ? . description=trf scaffold_80 . repeat_region 51427 51535 . ? . description=trf scaffold_80 . repeat_region 51445 51529 . ? . description=trf scaffold_80 . biological_region 51517 51521 0.999 - . logic_name=eponine scaffold_80 . biological_region 51846 51847 0.999 - . logic_name=eponine scaffold_80 . repeat_region 54775 54890 . + . description=Gypsy-1-LTR_PI scaffold_80 . repeat_region 54900 58030 . + . description=Gypsy-2-I_PI-int scaffold_80 . repeat_region 58031 60765 . + . description=Gypsy-2-I_PI-int scaffold_80 . exon 49767 50185 . - . ID=Physo139927.6;Parent=Physo139927;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_80 . exon 50328 51027 . - . ID=Physo139927.5;Parent=Physo139927;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_80 . exon 51126 51179 . - . ID=Physo139927.4;Parent=Physo139927;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_80 . exon 51203 51329 . - . ID=Physo139927.3;Parent=Physo139927;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_80 . exon 51353 51617 . - . ID=Physo139927.2;Parent=Physo139927;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . exon 51650 52029 . - . ID=Physo139927.1;Parent=Physo139927;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 54944 59801 . + . ID=Physo139928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800012;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 54944 59801 . + . ID=Physo139928;Parent=Physo139928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 54944 55742 . + 0 ID=Physo139928;Parent=Physo139928;rank=1 scaffold_80 . exon 54944 55742 . + . ID=Physo139928.1;Parent=Physo139928;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . CDS 55871 56099 . + 0 ID=Physo139928;Parent=Physo139928;rank=2 scaffold_80 . exon 55871 56099 . + . ID=Physo139928.2;Parent=Physo139928;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_80 . CDS 56304 57222 . + 0 ID=Physo139928;Parent=Physo139928;rank=3 scaffold_80 . exon 56304 57222 . + . ID=Physo139928.3;Parent=Physo139928;constitutive=1;ensembl_phase=2;rank=3 scaffold_80 . CDS 57408 59801 . + 0 ID=Physo139928;Parent=Physo139928;rank=4 scaffold_80 . exon 57408 59801 . + . ID=Physo139928.4;Parent=Physo139928;constitutive=1;rank=4 scaffold_80 ensembl protein_coding_gene 59994 61737 . - . ID=Physo139929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800013;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 59994 61737 . - . ID=Physo139929;Parent=Physo139929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 59994 60671 . - 0 ID=Physo139929;Parent=Physo139929;rank=3 scaffold_80 . exon 59994 60671 . - . ID=Physo139929.3;Parent=Physo139929;constitutive=1;rank=3 scaffold_80 . CDS 60772 61305 . - 0 ID=Physo139929;Parent=Physo139929;rank=2 scaffold_80 . exon 60772 61305 . - . ID=Physo139929.2;Parent=Physo139929;constitutive=1;rank=2 scaffold_80 . CDS 61726 61737 . - 0 ID=Physo139929;Parent=Physo139929;rank=1 scaffold_80 . exon 61726 61737 . - . ID=Physo139929.1;Parent=Physo139929;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 63902 64663 . - . ID=Physo139930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800014;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 63902 64663 . - . ID=Physo139930;Parent=Physo139930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 63902 64663 . - 0 ID=Physo139930;Parent=Physo139930;rank=1 scaffold_80 . exon 63902 64663 . - . ID=Physo139930.1;Parent=Physo139930;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 65440 68583 . + . ID=Physo139931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800015;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 65440 68583 . + . ID=Physo139931;Parent=Physo139931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 65440 65787 . + 0 ID=Physo139931;Parent=Physo139931;rank=1 scaffold_80 . exon 65440 65787 . + . ID=Physo139931.1;Parent=Physo139931;constitutive=1;rank=1 scaffold_80 . CDS 65849 66102 . + 0 ID=Physo139931;Parent=Physo139931;rank=2 scaffold_80 . exon 65849 66102 . + . ID=Physo139931.2;Parent=Physo139931;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_80 . CDS 66217 67911 . + 0 ID=Physo139931;Parent=Physo139931;rank=3 scaffold_80 . exon 66217 67911 . + . ID=Physo139931.3;Parent=Physo139931;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 67986 68057 . + 0 ID=Physo139931;Parent=Physo139931;rank=4 scaffold_80 . exon 67986 68057 . + . ID=Physo139931.4;Parent=Physo139931;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_80 . CDS 68128 68359 . + 0 ID=Physo139931;Parent=Physo139931;rank=5 scaffold_80 . exon 68128 68359 . + . ID=Physo139931.5;Parent=Physo139931;constitutive=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 68440 68583 . + 0 ID=Physo139931;Parent=Physo139931;rank=6 scaffold_80 . exon 68440 68583 . + . ID=Physo139931.6;Parent=Physo139931;constitutive=1;rank=6 scaffold_80 ensembl protein_coding_gene 68742 70429 . - . ID=Physo139932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800016;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 68742 70429 . - . ID=Physo139932;Parent=Physo139932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 68742 68900 . - 0 ID=Physo139932;Parent=Physo139932;rank=4 scaffold_80 . exon 68742 68900 . - . ID=Physo139932.4;Parent=Physo139932;constitutive=1;rank=4 scaffold_80 . CDS 68970 69628 . - 0 ID=Physo139932;Parent=Physo139932;rank=3 scaffold_80 . exon 68970 69628 . - . ID=Physo139932.3;Parent=Physo139932;constitutive=1;ensembl_phase=1;rank=3 scaffold_80 . CDS 69701 69827 . - 0 ID=Physo139932;Parent=Physo139932;rank=2 scaffold_80 . CDS 69893 70429 . - 0 ID=Physo139932;Parent=Physo139932;rank=1 scaffold_80 . biological_region 70252 70257 0.999 + . logic_name=eponine scaffold_80 . biological_region 70308 70311 0.999 - . logic_name=eponine scaffold_80 . biological_region 70350 70353 0.999 - . logic_name=eponine scaffold_80 . repeat_region 72590 72626 . ? . description=dust scaffold_80 . biological_region 73152 73156 0.999 + . logic_name=eponine scaffold_80 . biological_region 73187 73189 0.999 + . logic_name=eponine scaffold_80 . biological_region 73227 73231 0.999 - . logic_name=eponine scaffold_80 . biological_region 73460 73462 0.999 - . logic_name=eponine scaffold_80 . repeat_region 74150 74164 . ? . description=dust scaffold_80 . repeat_region 78327 78340 . ? . description=dust scaffold_80 . biological_region 78371 78380 0.999 + . logic_name=eponine scaffold_80 . biological_region 78428 78431 0.999 - . logic_name=eponine scaffold_80 . exon 69701 69827 . - . ID=Physo139932.2;Parent=Physo139932;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_80 . exon 69893 70429 . - . ID=Physo139932.1;Parent=Physo139932;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 70874 71825 . + . ID=Physo139933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800017;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 70874 71825 . + . ID=Physo139933;Parent=Physo139933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 70874 71152 . + . ID=Physo139933.1;Parent=Physo139933;constitutive=1;ensembl_phase=-1;rank=1 scaffold_80 . CDS 70901 71152 . + 0 ID=Physo139933;Parent=Physo139933;rank=1 scaffold_80 . CDS 71221 71727 . + 0 ID=Physo139933;Parent=Physo139933;rank=2 scaffold_80 . exon 71221 71825 . + . ID=Physo139933.2;Parent=Physo139933;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_80 ensembl protein_coding_gene 72115 72821 . - . ID=Physo139934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800018;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 72115 72821 . - . ID=Physo139934;Parent=Physo139934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 72115 72427 . - . ID=Physo139934.2;Parent=Physo139934;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_80 . CDS 72173 72427 . - 0 ID=Physo139934;Parent=Physo139934;rank=2 scaffold_80 . CDS 72522 72776 . - 0 ID=Physo139934;Parent=Physo139934;rank=1 scaffold_80 . exon 72522 72821 . - . ID=Physo139934.1;Parent=Physo139934;constitutive=1;ensembl_phase=-1;rank=1 scaffold_80 ensembl protein_coding_gene 73031 75808 . + . ID=Physo139935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800019;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 73031 75808 . + . ID=Physo139935;Parent=Physo139935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 73031 73908 . + 0 ID=Physo139935;Parent=Physo139935;rank=1 scaffold_80 . exon 73031 73908 . + . ID=Physo139935.1;Parent=Physo139935;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 73976 74129 . + 0 ID=Physo139935;Parent=Physo139935;rank=2 scaffold_80 . exon 73976 74129 . + . ID=Physo139935.2;Parent=Physo139935;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 74216 74278 . + 0 ID=Physo139935;Parent=Physo139935;rank=3 scaffold_80 . exon 74216 74278 . + . ID=Physo139935.3;Parent=Physo139935;constitutive=1;rank=3 scaffold_80 . CDS 74357 74494 . + 0 ID=Physo139935;Parent=Physo139935;rank=4 scaffold_80 . exon 74357 74494 . + . ID=Physo139935.4;Parent=Physo139935;constitutive=1;rank=4 scaffold_80 . CDS 74565 74660 . + 0 ID=Physo139935;Parent=Physo139935;rank=5 scaffold_80 . exon 74565 74660 . + . ID=Physo139935.5;Parent=Physo139935;constitutive=1;rank=5 scaffold_80 . CDS 74724 75203 . + 0 ID=Physo139935;Parent=Physo139935;rank=6 scaffold_80 . exon 74724 75203 . + . ID=Physo139935.6;Parent=Physo139935;constitutive=1;rank=6 scaffold_80 . CDS 75276 75360 . + 0 ID=Physo139935;Parent=Physo139935;rank=7 scaffold_80 . exon 75276 75360 . + . ID=Physo139935.7;Parent=Physo139935;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_80 . CDS 75432 75808 . + 0 ID=Physo139935;Parent=Physo139935;rank=8 scaffold_80 . exon 75432 75808 . + . ID=Physo139935.8;Parent=Physo139935;constitutive=1;ensembl_phase=1;rank=8 scaffold_80 ensembl protein_coding_gene 76190 76656 . - . ID=Physo139936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800020;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 76190 76656 . - . ID=Physo139936;Parent=Physo139936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 76190 76237 . - 0 ID=Physo139936;Parent=Physo139936;rank=3 scaffold_80 . exon 76190 76237 . - . ID=Physo139936.3;Parent=Physo139936;constitutive=1;rank=3 scaffold_80 . CDS 76311 76385 . - 0 ID=Physo139936;Parent=Physo139936;rank=2 scaffold_80 . exon 76311 76385 . - . ID=Physo139936.2;Parent=Physo139936;constitutive=1;rank=2 scaffold_80 . CDS 76471 76656 . - 0 ID=Physo139936;Parent=Physo139936;rank=1 scaffold_80 . exon 76471 76656 . - . ID=Physo139936.1;Parent=Physo139936;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 78341 79546 . - . ID=Physo139937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800021;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 78341 79546 . - . ID=Physo139937;Parent=Physo139937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 78341 79546 . - 0 ID=Physo139937;Parent=Physo139937;rank=1 scaffold_80 . exon 78341 79546 . - . ID=Physo139937.1;Parent=Physo139937;constitutive=1;rank=1 scaffold_80 . repeat_region 87243 87269 . ? . description=trf scaffold_80 ensembl protein_coding_gene 82137 83354 . - . ID=Physo139938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800022;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 82137 83354 . - . ID=Physo139938;Parent=Physo139938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 82137 83354 . - 0 ID=Physo139938;Parent=Physo139938;rank=1 scaffold_80 . exon 82137 83354 . - . ID=Physo139938.1;Parent=Physo139938;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 84083 85168 . - . ID=Physo139939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800023;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 84083 85168 . - . ID=Physo139939;Parent=Physo139939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 84083 85168 . - 0 ID=Physo139939;Parent=Physo139939;rank=1 scaffold_80 . exon 84083 85168 . - . ID=Physo139939.1;Parent=Physo139939;constitutive=1;rank=1 scaffold_80 . repeat_region 89606 89788 . + . description=GypsyPi-1c_LTR scaffold_80 . repeat_region 89789 90565 . + . description=GypsyPi-1c_I-int scaffold_80 . biological_region 90290 90294 0.999 + . logic_name=eponine scaffold_80 . biological_region 90310 90312 0.999 - . logic_name=eponine scaffold_80 . repeat_region 90575 90624 . ? . description=dust scaffold_80 . repeat_region 90998 91180 . + . description=GypsyPi-1c_LTR scaffold_80 . repeat_region 91181 92360 . + . description=GypsyPi-1c_I-int scaffold_80 . biological_region 91682 91686 0.999 + . logic_name=eponine scaffold_80 . biological_region 91702 91704 0.999 - . logic_name=eponine scaffold_80 . repeat_region 92363 92412 . ? . description=dust scaffold_80 . repeat_region 93799 97869 . ? . description=dust scaffold_80 . repeat_region 97870 98626 . + . description=GypsyPi-1c_I-int scaffold_80 . repeat_region 98637 98686 . ? . description=dust scaffold_80 . repeat_region 98707 99551 . + . description=GypsyPi-1c_I-int scaffold_80 . biological_region 98956 98960 0.999 - . logic_name=eponine scaffold_80 ensembl protein_coding_gene 89876 90763 . + . ID=Physo139940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800024;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 89876 90763 . + . ID=Physo139940;Parent=Physo139940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 89876 90533 . + 0 ID=Physo139940;Parent=Physo139940;rank=1 scaffold_80 . exon 89876 90533 . + . ID=Physo139940.1;Parent=Physo139940;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . CDS 90744 90763 . + 0 ID=Physo139940;Parent=Physo139940;rank=2 scaffold_80 . exon 90744 90763 . + . ID=Physo139940.2;Parent=Physo139940;constitutive=1;ensembl_phase=1;rank=2 scaffold_80 ensembl protein_coding_gene 91268 92272 . + . ID=Physo139941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800025;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 91268 92272 . + . ID=Physo139941;Parent=Physo139941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 91268 92272 . + 0 ID=Physo139941;Parent=Physo139941;rank=1 scaffold_80 . exon 91268 92272 . + . ID=Physo139941.1;Parent=Physo139941;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 92777 93652 . - . ID=Physo139942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800026;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 92777 93652 . - . ID=Physo139942;Parent=Physo139942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 92777 93652 . - 0 ID=Physo139942;Parent=Physo139942;rank=1 scaffold_80 . exon 92777 93652 . - . ID=Physo139942.1;Parent=Physo139942;constitutive=1;rank=1 scaffold_80 . repeat_region 100947 100990 . ? . description=trf scaffold_80 . repeat_region 100964 101008 . ? . description=trf scaffold_80 . repeat_region 104488 104536 . ? . description=trf scaffold_80 . repeat_region 104488 104536 . ? . description=trf scaffold_80 . repeat_region 104949 105032 . ? . description=trf scaffold_80 . repeat_region 105476 105529 . ? . description=trf scaffold_80 . repeat_region 107322 107365 . ? . description=trf scaffold_80 ensembl protein_coding_gene 99533 102681 . - . ID=Physo139943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800027;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 99533 102681 . - . ID=Physo139943;Parent=Physo139943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 99533 100190 . - 0 ID=Physo139943;Parent=Physo139943;rank=5 scaffold_80 . exon 99533 100190 . - . ID=Physo139943.5;Parent=Physo139943;constitutive=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 100792 100849 . - 0 ID=Physo139943;Parent=Physo139943;rank=4 scaffold_80 . exon 100792 100849 . - . ID=Physo139943.4;Parent=Physo139943;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_80 . CDS 100920 101127 . - 0 ID=Physo139943;Parent=Physo139943;rank=3 scaffold_80 . exon 100920 101127 . - . ID=Physo139943.3;Parent=Physo139943;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_80 . CDS 101276 102142 . - 0 ID=Physo139943;Parent=Physo139943;rank=2 scaffold_80 . exon 101276 102142 . - . ID=Physo139943.2;Parent=Physo139943;constitutive=1;rank=2 scaffold_80 . CDS 102187 102681 . - 0 ID=Physo139943;Parent=Physo139943;rank=1 scaffold_80 . exon 102187 102681 . - . ID=Physo139943.1;Parent=Physo139943;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 104651 107963 . + . ID=Physo139944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800028;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 104651 107963 . + . ID=Physo139944;Parent=Physo139944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 104651 105168 . + 0 ID=Physo139944;Parent=Physo139944;rank=1 scaffold_80 . exon 104651 105168 . + . ID=Physo139944.1;Parent=Physo139944;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 105230 105877 . + 0 ID=Physo139944;Parent=Physo139944;rank=2 scaffold_80 . exon 105230 105877 . + . ID=Physo139944.2;Parent=Physo139944;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_80 . CDS 105908 106689 . + 0 ID=Physo139944;Parent=Physo139944;rank=3 scaffold_80 . exon 105908 106689 . + . ID=Physo139944.3;Parent=Physo139944;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_80 . CDS 106822 107963 . + 0 ID=Physo139944;Parent=Physo139944;rank=4 scaffold_80 . exon 106822 107963 . + . ID=Physo139944.4;Parent=Physo139944;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 ensembl protein_coding_gene 109001 112138 . + . ID=Physo139945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800029;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 109001 112138 . + . ID=Physo139945;Parent=Physo139945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 109001 109084 . + 0 ID=Physo139945;Parent=Physo139945;rank=1 scaffold_80 . exon 109001 109084 . + . ID=Physo139945.1;Parent=Physo139945;constitutive=1;rank=1 scaffold_80 . CDS 109309 109985 . + 0 ID=Physo139945;Parent=Physo139945;rank=2 scaffold_80 . CDS 110109 110782 . + 0 ID=Physo139945;Parent=Physo139945;rank=3 scaffold_80 . CDS 110974 111275 . + 0 ID=Physo139945;Parent=Physo139945;rank=4 scaffold_80 . CDS 111431 112138 . + 0 ID=Physo139945;Parent=Physo139945;rank=5 scaffold_80 . biological_region 113481 113483 0.999 + . logic_name=eponine scaffold_80 . biological_region 113966 113968 0.999 + . logic_name=eponine scaffold_80 . biological_region 115974 115975 0.999 + . logic_name=eponine scaffold_80 . biological_region 116049 116051 0.999 - . logic_name=eponine scaffold_80 . biological_region 116086 116089 0.999 + . logic_name=eponine scaffold_80 . biological_region 116126 116134 0.999 + . logic_name=eponine scaffold_80 . biological_region 116172 116175 0.999 - . logic_name=eponine scaffold_80 . biological_region 116757 116761 0.999 - . logic_name=eponine scaffold_80 . repeat_region 118337 118344 . ? . description=dust scaffold_80 . exon 109309 109985 . + . ID=Physo139945.2;Parent=Physo139945;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_80 . exon 110109 110782 . + . ID=Physo139945.3;Parent=Physo139945;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_80 . exon 110974 111275 . + . ID=Physo139945.4;Parent=Physo139945;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 . exon 111431 112138 . + . ID=Physo139945.5;Parent=Physo139945;constitutive=1;rank=5 scaffold_80 ensembl protein_coding_gene 114814 116223 . - . ID=Physo139946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800030;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 114814 116223 . - . ID=Physo139946;Parent=Physo139946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 114814 116223 . - 0 ID=Physo139946;Parent=Physo139946;rank=1 scaffold_80 . exon 114814 116223 . - . ID=Physo139946.1;Parent=Physo139946;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 116972 117697 . + . ID=Physo139947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800031;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 116972 117697 . + . ID=Physo139947;Parent=Physo139947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 116972 117697 . + 0 ID=Physo139947;Parent=Physo139947;rank=1 scaffold_80 . exon 116972 117697 . + . ID=Physo139947.1;Parent=Physo139947;constitutive=1;rank=1 scaffold_80 . repeat_region 119537 119591 . ? . description=trf scaffold_80 . repeat_region 119963 120002 . ? . description=trf scaffold_80 . repeat_region 122501 122527 . ? . description=trf scaffold_80 . repeat_region 124992 125068 . ? . description=trf scaffold_80 . repeat_region 124994 125083 . ? . description=trf scaffold_80 ensembl protein_coding_gene 120743 124984 . + . ID=Physo139948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800032;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 120743 124984 . + . ID=Physo139948;Parent=Physo139948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 120743 121884 . + 0 ID=Physo139948;Parent=Physo139948;rank=1 scaffold_80 . exon 120743 121884 . + . ID=Physo139948.1;Parent=Physo139948;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 122020 122353 . + 0 ID=Physo139948;Parent=Physo139948;rank=2 scaffold_80 . exon 122020 122353 . + . ID=Physo139948.2;Parent=Physo139948;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 122902 124107 . + 0 ID=Physo139948;Parent=Physo139948;rank=3 scaffold_80 . exon 122902 124107 . + . ID=Physo139948.3;Parent=Physo139948;constitutive=1;rank=3 scaffold_80 . CDS 124146 124460 . + 0 ID=Physo139948;Parent=Physo139948;rank=4 scaffold_80 . exon 124146 124460 . + . ID=Physo139948.4;Parent=Physo139948;constitutive=1;rank=4 scaffold_80 . CDS 124634 124984 . + 0 ID=Physo139948;Parent=Physo139948;rank=5 scaffold_80 . exon 124634 124984 . + . ID=Physo139948.5;Parent=Physo139948;constitutive=1;rank=5 scaffold_80 ensembl protein_coding_gene 125112 127072 . + . ID=Physo139949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800033;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 125112 127072 . + . ID=Physo139949;Parent=Physo139949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 125112 125390 . + 0 ID=Physo139949;Parent=Physo139949;rank=1 scaffold_80 . exon 125112 125390 . + . ID=Physo139949.1;Parent=Physo139949;constitutive=1;rank=1 scaffold_80 . CDS 125617 125704 . + 0 ID=Physo139949;Parent=Physo139949;rank=2 scaffold_80 . exon 125617 125704 . + . ID=Physo139949.2;Parent=Physo139949;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_80 . CDS 125776 125982 . + 0 ID=Physo139949;Parent=Physo139949;rank=3 scaffold_80 . exon 125776 125982 . + . ID=Physo139949.3;Parent=Physo139949;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_80 . CDS 126249 126285 . + 0 ID=Physo139949;Parent=Physo139949;rank=4 scaffold_80 . exon 126249 126285 . + . ID=Physo139949.4;Parent=Physo139949;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_80 . CDS 126350 126458 . + 0 ID=Physo139949;Parent=Physo139949;rank=5 scaffold_80 . exon 126350 126458 . + . ID=Physo139949.5;Parent=Physo139949;constitutive=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 126518 127072 . + 0 ID=Physo139949;Parent=Physo139949;rank=6 scaffold_80 . exon 126518 127072 . + . ID=Physo139949.6;Parent=Physo139949;constitutive=1;rank=6 scaffold_80 ensembl protein_coding_gene 127234 128544 . - . ID=Physo139950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800034;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 127234 128544 . - . ID=Physo139950;Parent=Physo139950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 127234 127255 . - 0 ID=Physo139950;Parent=Physo139950;rank=4 scaffold_80 . exon 127234 127255 . - . ID=Physo139950.4;Parent=Physo139950;constitutive=1;ensembl_phase=2;rank=4 scaffold_80 . CDS 127323 127401 . - 0 ID=Physo139950;Parent=Physo139950;rank=3 scaffold_80 . exon 127323 127401 . - . ID=Physo139950.3;Parent=Physo139950;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_80 . CDS 127501 128236 . - 0 ID=Physo139950;Parent=Physo139950;rank=2 scaffold_80 . exon 127501 128236 . - . ID=Physo139950.2;Parent=Physo139950;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_80 . CDS 128311 128544 . - 0 ID=Physo139950;Parent=Physo139950;rank=1 scaffold_80 . exon 128311 128544 . - . ID=Physo139950.1;Parent=Physo139950;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 128751 132771 . - . ID=Physo158064;biotype=protein_coding;external_name=C_scaffold_80000001;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 128751 132771 . - . ID=Physo158064;Parent=Physo158064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 128751 128878 . - 0 ID=Physo158064;Parent=Physo158064;rank=14 scaffold_80 . exon 128751 128878 . - . ID=Physo158064.14;Parent=Physo158064;constitutive=1;ensembl_phase=1;rank=14 scaffold_80 . CDS 129010 129143 . - 0 ID=Physo158064;Parent=Physo158064;rank=13 scaffold_80 . exon 129010 129143 . - . ID=Physo158064.13;Parent=Physo158064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_80 . CDS 129264 129403 . - 0 ID=Physo158064;Parent=Physo158064;rank=12 scaffold_80 . CDS 129475 129583 . - 0 ID=Physo158064;Parent=Physo158064;rank=11 scaffold_80 . CDS 129663 129693 . - 0 ID=Physo158064;Parent=Physo158064;rank=10 scaffold_80 . CDS 129814 129942 . - 0 ID=Physo158064;Parent=Physo158064;rank=9 scaffold_80 . CDS 129991 130040 . - 0 ID=Physo158064;Parent=Physo158064;rank=8 scaffold_80 . CDS 130072 130202 . - 0 ID=Physo158064;Parent=Physo158064;rank=7 scaffold_80 . CDS 130238 130408 . - 0 ID=Physo158064;Parent=Physo158064;rank=6 scaffold_80 . CDS 130433 130645 . - 0 ID=Physo158064;Parent=Physo158064;rank=5 scaffold_80 . CDS 130829 131121 . - 0 ID=Physo158064;Parent=Physo158064;rank=4 scaffold_80 . CDS 131289 131958 . - 0 ID=Physo158064;Parent=Physo158064;rank=3 scaffold_80 . CDS 131995 132154 . - 0 ID=Physo158064;Parent=Physo158064;rank=2 scaffold_80 . CDS 132197 132771 . - 0 ID=Physo158064;Parent=Physo158064;rank=1 scaffold_80 . repeat_region 130583 130631 . ? . description=dust scaffold_80 . biological_region 132114 132115 0.999 + . logic_name=eponine scaffold_80 . biological_region 132671 132677 0.999 - . logic_name=eponine scaffold_80 . biological_region 133692 133694 0.999 + . logic_name=eponine scaffold_80 . biological_region 133722 133728 0.999 - . logic_name=eponine scaffold_80 . biological_region 134216 134220 0.999 + . logic_name=eponine scaffold_80 . biological_region 134242 134246 0.999 + . logic_name=eponine scaffold_80 . biological_region 134258 134262 0.999 + . logic_name=eponine scaffold_80 . repeat_region 136890 136911 . ? . description=dust scaffold_80 . biological_region 138109 138112 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 134007 135950 . - . ID=Physo139952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800036;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 134007 135950 . - . ID=Physo139952;Parent=Physo139952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 134007 134066 . - 0 ID=Physo139952;Parent=Physo139952;rank=5 scaffold_80 . exon 134007 134066 . - . ID=Physo139952.5;Parent=Physo139952;constitutive=1;rank=5 scaffold_80 . CDS 134136 134578 . - 0 ID=Physo139952;Parent=Physo139952;rank=4 scaffold_80 . exon 134136 134578 . - . ID=Physo139952.4;Parent=Physo139952;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 . CDS 134638 135256 . - 0 ID=Physo139952;Parent=Physo139952;rank=3 scaffold_80 . exon 134638 135256 . - . ID=Physo139952.3;Parent=Physo139952;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_80 . CDS 135336 135655 . - 0 ID=Physo139952;Parent=Physo139952;rank=2 scaffold_80 . exon 135336 135655 . - . ID=Physo139952.2;Parent=Physo139952;constitutive=1;ensembl_phase=1;rank=2 scaffold_80 . CDS 135722 135950 . - 0 ID=Physo139952;Parent=Physo139952;rank=1 scaffold_80 . exon 135722 135950 . - . ID=Physo139952.1;Parent=Physo139952;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . exon 129264 129403 . - . ID=Physo158064.12;Parent=Physo158064;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_80 . exon 129475 129583 . - . ID=Physo158064.11;Parent=Physo158064;constitutive=1;ensembl_phase=2;rank=11 scaffold_80 . exon 129663 129693 . - . ID=Physo158064.10;Parent=Physo158064;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_80 . exon 129814 129942 . - . ID=Physo158064.9;Parent=Physo158064;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_80 . exon 129991 130040 . - . ID=Physo158064.8;Parent=Physo158064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_80 . exon 130072 130202 . - . ID=Physo158064.7;Parent=Physo158064;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_80 . exon 130238 130408 . - . ID=Physo158064.6;Parent=Physo158064;constitutive=1;rank=6 scaffold_80 . exon 130433 130645 . - . ID=Physo158064.5;Parent=Physo158064;constitutive=1;rank=5 scaffold_80 . exon 130829 131121 . - . ID=Physo158064.4;Parent=Physo158064;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 . exon 131289 131958 . - . ID=Physo158064.3;Parent=Physo158064;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_80 . exon 131995 132154 . - . ID=Physo158064.2;Parent=Physo158064;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . exon 132197 132771 . - . ID=Physo158064.1;Parent=Physo158064;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 141193 146518 . + . ID=Physo139953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800037;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 141193 146518 . + . ID=Physo139953;Parent=Physo139953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 141193 141432 . + . ID=Physo139953.1;Parent=Physo139953;constitutive=1;ensembl_phase=-1;rank=1 scaffold_80 . CDS 141352 141432 . + 0 ID=Physo139953;Parent=Physo139953;rank=1 scaffold_80 . CDS 141753 142029 . + 0 ID=Physo139953;Parent=Physo139953;rank=2 scaffold_80 . exon 141753 142029 . + . ID=Physo139953.2;Parent=Physo139953;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_80 . CDS 142059 142213 . + 0 ID=Physo139953;Parent=Physo139953;rank=3 scaffold_80 . exon 142059 142213 . + . ID=Physo139953.3;Parent=Physo139953;constitutive=1;ensembl_phase=1;rank=3 scaffold_80 . CDS 142337 142632 . + 0 ID=Physo139953;Parent=Physo139953;rank=4 scaffold_80 . exon 142337 142632 . + . ID=Physo139953.4;Parent=Physo139953;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_80 . CDS 142761 144479 . + 0 ID=Physo139953;Parent=Physo139953;rank=5 scaffold_80 . exon 142761 144479 . + . ID=Physo139953.5;Parent=Physo139953;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_80 . CDS 144567 145090 . + 0 ID=Physo139953;Parent=Physo139953;rank=6 scaffold_80 . exon 144567 145090 . + . ID=Physo139953.6;Parent=Physo139953;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_80 . CDS 145132 145799 . + 0 ID=Physo139953;Parent=Physo139953;rank=7 scaffold_80 . exon 145132 145799 . + . ID=Physo139953.7;Parent=Physo139953;constitutive=1;ensembl_phase=1;rank=7 scaffold_80 . CDS 145820 146059 . + 0 ID=Physo139953;Parent=Physo139953;rank=8 scaffold_80 . exon 145820 146059 . + . ID=Physo139953.8;Parent=Physo139953;constitutive=1;rank=8 scaffold_80 . CDS 146102 146518 . + 0 ID=Physo139953;Parent=Physo139953;rank=9 scaffold_80 . exon 146102 146518 . + . ID=Physo139953.9;Parent=Physo139953;constitutive=1;rank=9 scaffold_80 ensembl protein_coding_gene 147084 150108 . - . ID=Physo139954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800038;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 147084 150108 . - . ID=Physo139954;Parent=Physo139954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 147084 148549 . - 0 ID=Physo139954;Parent=Physo139954;rank=5 scaffold_80 . exon 147084 148549 . - . ID=Physo139954.5;Parent=Physo139954;constitutive=1;ensembl_phase=1;rank=5 scaffold_80 . CDS 148845 148892 . - 0 ID=Physo139954;Parent=Physo139954;rank=4 scaffold_80 . exon 148845 148892 . - . ID=Physo139954.4;Parent=Physo139954;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_80 . CDS 148976 149262 . - 0 ID=Physo139954;Parent=Physo139954;rank=3 scaffold_80 . CDS 149423 149744 . - 0 ID=Physo139954;Parent=Physo139954;rank=2 scaffold_80 . CDS 149871 150108 . - 0 ID=Physo139954;Parent=Physo139954;rank=1 scaffold_80 . repeat_region 149993 150078 . ? . description=trf scaffold_80 . repeat_region 150004 150067 . ? . description=dust scaffold_80 . biological_region 150055 150058 0.999 - . logic_name=eponine scaffold_80 . repeat_region 151161 151203 . ? . description=dust scaffold_80 . repeat_region 151654 151702 . ? . description=trf scaffold_80 . repeat_region 151784 152669 . ? . description=dust scaffold_80 . repeat_region 156564 156588 . ? . description=dust scaffold_80 . repeat_region 157223 157247 . ? . description=dust scaffold_80 . repeat_region 157978 158033 . ? . description=trf scaffold_80 . biological_region 158403 158404 0.999 + . logic_name=eponine scaffold_80 . biological_region 158465 158471 0.999 + . logic_name=eponine scaffold_80 . repeat_region 158475 158558 . ? . description=trf scaffold_80 . repeat_region 158475 158578 . ? . description=trf scaffold_80 . biological_region 158485 158487 0.999 + . logic_name=eponine scaffold_80 . biological_region 158507 158509 0.999 - . logic_name=eponine scaffold_80 . biological_region 158524 158530 0.999 - . logic_name=eponine scaffold_80 . biological_region 158528 158532 0.999 + . logic_name=eponine scaffold_80 . biological_region 158548 158554 0.999 - . logic_name=eponine scaffold_80 . biological_region 158562 158568 0.999 + . logic_name=eponine scaffold_80 . repeat_region 158570 158662 . ? . description=trf scaffold_80 . biological_region 158570 158570 0.999 - . logic_name=eponine scaffold_80 . biological_region 158583 158583 0.999 - . logic_name=eponine scaffold_80 . biological_region 158594 158596 0.999 - . logic_name=eponine scaffold_80 . biological_region 158601 158605 0.999 - . logic_name=eponine scaffold_80 . repeat_region 158604 158662 . ? . description=dust scaffold_80 . repeat_region 158619 158662 . ? . description=trf scaffold_80 . biological_region 158620 158624 0.999 - . logic_name=eponine scaffold_80 . biological_region 158662 158665 0.999 - . logic_name=eponine scaffold_80 . biological_region 158713 158721 0.999 - . logic_name=eponine scaffold_80 ensembl protein_coding_gene 153381 153858 . - . ID=Physo109248;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_800002;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 153381 153858 . - . ID=Physo109248;Parent=Physo109248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 153381 153420 . - 0 ID=Physo109248;Parent=Physo109248;rank=2 scaffold_80 . exon 153381 153420 . - . ID=Physo109248.2;Parent=Physo109248;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 153470 153858 . - 0 ID=Physo109248;Parent=Physo109248;rank=1 scaffold_80 . exon 153470 153858 . - . ID=Physo109248.1;Parent=Physo109248;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . exon 148976 149262 . - . ID=Physo139954.3;Parent=Physo139954;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_80 . exon 149423 149744 . - . ID=Physo139954.2;Parent=Physo139954;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_80 . exon 149871 150108 . - . ID=Physo139954.1;Parent=Physo139954;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 ensembl protein_coding_gene 155577 161133 . - . ID=Physo139956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800040;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 155577 161133 . - . ID=Physo139956;Parent=Physo139956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 155577 156035 . - 0 ID=Physo139956;Parent=Physo139956;rank=7 scaffold_80 . exon 155577 156035 . - . ID=Physo139956.7;Parent=Physo139956;constitutive=1;rank=7 scaffold_80 . CDS 156055 156638 . - 0 ID=Physo139956;Parent=Physo139956;rank=6 scaffold_80 . exon 156055 156638 . - . ID=Physo139956.6;Parent=Physo139956;constitutive=1;ensembl_phase=1;rank=6 scaffold_80 . CDS 156838 157483 . - 0 ID=Physo139956;Parent=Physo139956;rank=5 scaffold_80 . exon 156838 157483 . - . ID=Physo139956.5;Parent=Physo139956;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_80 . CDS 157540 157585 . - 0 ID=Physo139956;Parent=Physo139956;rank=4 scaffold_80 . exon 157540 157585 . - . ID=Physo139956.4;Parent=Physo139956;constitutive=1;ensembl_phase=2;rank=4 scaffold_80 . CDS 157636 158277 . - 0 ID=Physo139956;Parent=Physo139956;rank=3 scaffold_80 . exon 157636 158277 . - . ID=Physo139956.3;Parent=Physo139956;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 158339 159026 . - 0 ID=Physo139956;Parent=Physo139956;rank=2 scaffold_80 . exon 158339 159026 . - . ID=Physo139956.2;Parent=Physo139956;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_80 . CDS 159579 161133 . - 0 ID=Physo139956;Parent=Physo139956;rank=1 scaffold_80 . exon 159579 161133 . - . ID=Physo139956.1;Parent=Physo139956;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 ensembl protein_coding_gene 162252 164555 . - . ID=Physo139957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800041;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 162252 164555 . - . ID=Physo139957;Parent=Physo139957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 162252 164555 . - 0 ID=Physo139957;Parent=Physo139957;rank=1 scaffold_80 . exon 162252 164555 . - . ID=Physo139957.1;Parent=Physo139957;constitutive=1;rank=1 scaffold_80 . repeat_region 170018 170207 . ? . description=trf scaffold_80 . repeat_region 170018 170207 . ? . description=trf scaffold_80 . biological_region 172886 172887 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 175977 176463 . - . ID=Physo139958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800042;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 175977 176463 . - . ID=Physo139958;Parent=Physo139958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 175977 176144 . - 0 ID=Physo139958;Parent=Physo139958;rank=2 scaffold_80 . exon 175977 176144 . - . ID=Physo139958.2;Parent=Physo139958;constitutive=1;rank=2 scaffold_80 . CDS 176227 176463 . - 0 ID=Physo139958;Parent=Physo139958;rank=1 scaffold_80 . exon 176227 176463 . - . ID=Physo139958.1;Parent=Physo139958;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 176819 178147 . + . ID=Physo139959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800043;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 176819 178147 . + . ID=Physo139959;Parent=Physo139959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 176819 178147 . + 0 ID=Physo139959;Parent=Physo139959;rank=1 scaffold_80 . exon 176819 178147 . + . ID=Physo139959.1;Parent=Physo139959;constitutive=1;rank=1 scaffold_80 . repeat_region 181244 181287 . ? . description=dust scaffold_80 ensembl protein_coding_gene 182531 185869 . - . ID=Physo139961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800045;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 182531 185869 . - . ID=Physo139961;Parent=Physo139961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 182531 185869 . - 0 ID=Physo139961;Parent=Physo139961;rank=1 scaffold_80 . exon 182531 185869 . - . ID=Physo139961.1;Parent=Physo139961;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 186074 187534 . - . ID=Physo139962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800046;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 186074 187534 . - . ID=Physo139962;Parent=Physo139962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 186074 187534 . - 0 ID=Physo139962;Parent=Physo139962;rank=1 scaffold_80 . exon 186074 187534 . - . ID=Physo139962.1;Parent=Physo139962;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 178861 181726 . + . ID=Physo158067;biotype=protein_coding;external_name=C_scaffold_80000004;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 178861 181726 . + . ID=Physo158067;Parent=Physo158067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 178861 179037 . + 0 ID=Physo158067;Parent=Physo158067;rank=1 scaffold_80 . exon 178861 179037 . + . ID=Physo158067.1;Parent=Physo158067;constitutive=1;rank=1 scaffold_80 . CDS 179105 179305 . + 0 ID=Physo158067;Parent=Physo158067;rank=2 scaffold_80 . exon 179105 179305 . + . ID=Physo158067.2;Parent=Physo158067;constitutive=1;rank=2 scaffold_80 . CDS 179379 179723 . + 0 ID=Physo158067;Parent=Physo158067;rank=3 scaffold_80 . exon 179379 179723 . + . ID=Physo158067.3;Parent=Physo158067;constitutive=1;rank=3 scaffold_80 . CDS 179797 180397 . + 0 ID=Physo158067;Parent=Physo158067;rank=4 scaffold_80 . exon 179797 180397 . + . ID=Physo158067.4;Parent=Physo158067;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_80 . CDS 180428 180489 . + 0 ID=Physo158067;Parent=Physo158067;rank=5 scaffold_80 . exon 180428 180489 . + . ID=Physo158067.5;Parent=Physo158067;constitutive=1;ensembl_phase=1;rank=5 scaffold_80 . CDS 180556 180963 . + 0 ID=Physo158067;Parent=Physo158067;rank=6 scaffold_80 . exon 180556 180963 . + . ID=Physo158067.6;Parent=Physo158067;constitutive=1;rank=6 scaffold_80 . CDS 181028 181210 . + 0 ID=Physo158067;Parent=Physo158067;rank=7 scaffold_80 . exon 181028 181210 . + . ID=Physo158067.7;Parent=Physo158067;constitutive=1;rank=7 scaffold_80 . CDS 181294 181416 . + 0 ID=Physo158067;Parent=Physo158067;rank=8 scaffold_80 . exon 181294 181416 . + . ID=Physo158067.8;Parent=Physo158067;constitutive=1;rank=8 scaffold_80 . CDS 181487 181726 . + 0 ID=Physo158067;Parent=Physo158067;rank=9 scaffold_80 . exon 181487 181726 . + . ID=Physo158067.9;Parent=Physo158067;constitutive=1;rank=9 scaffold_80 ensembl protein_coding_gene 181904 182206 . - . ID=Physo158068;biotype=protein_coding;external_name=C_scaffold_80000005;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 181904 182206 . - . ID=Physo158068;Parent=Physo158068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 181904 182070 . - 0 ID=Physo158068;Parent=Physo158068;rank=2 scaffold_80 . exon 181904 182070 . - . ID=Physo158068.2;Parent=Physo158068;constitutive=1;ensembl_phase=1;rank=2 scaffold_80 . CDS 182149 182206 . - 0 ID=Physo158068;Parent=Physo158068;rank=1 scaffold_80 . exon 182149 182206 . - . ID=Physo158068.1;Parent=Physo158068;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . repeat_region 192286 192341 . ? . description=trf scaffold_80 . repeat_region 192295 192341 . ? . description=trf scaffold_80 . repeat_region 192345 192377 . ? . description=trf scaffold_80 . biological_region 192734 192737 0.999 - . logic_name=eponine scaffold_80 . biological_region 192932 192935 0.999 + . logic_name=eponine scaffold_80 . repeat_region 193089 193120 . ? . description=trf scaffold_80 . biological_region 193162 193163 0.999 + . logic_name=eponine scaffold_80 . biological_region 193962 193963 0.999 + . logic_name=eponine scaffold_80 . biological_region 194490 194494 0.999 - . logic_name=eponine scaffold_80 . repeat_region 195569 195596 . ? . description=trf scaffold_80 . biological_region 196983 196985 0.999 - . logic_name=eponine scaffold_80 ensembl protein_coding_gene 193705 194835 . + . ID=Physo109249;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_800003;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 193705 194835 . + . ID=Physo109249;Parent=Physo109249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 193705 194835 . + 0 ID=Physo109249;Parent=Physo109249;rank=1 scaffold_80 . exon 193705 194835 . + . ID=Physo109249.1;Parent=Physo109249;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 189387 191216 . - . ID=Physo139963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800047;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 189387 191216 . - . ID=Physo139963;Parent=Physo139963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 189387 191216 . - 0 ID=Physo139963;Parent=Physo139963;rank=1 scaffold_80 . exon 189387 191216 . - . ID=Physo139963.1;Parent=Physo139963;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 192006 193235 . - . ID=Physo139964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800048;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 192006 193235 . - . ID=Physo139964;Parent=Physo139964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 192006 193235 . - 0 ID=Physo139964;Parent=Physo139964;rank=1 scaffold_80 . exon 192006 193235 . - . ID=Physo139964.1;Parent=Physo139964;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 198340 199248 . + . ID=Physo139966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800050;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 198340 199248 . + . ID=Physo139966;Parent=Physo139966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 198340 199248 . + . ID=Physo139966.1;Parent=Physo139966;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_80 . CDS 198462 199175 . + 0 ID=Physo139966;Parent=Physo139966;rank=1 scaffold_80 . repeat_region 207072 207079 . ? . description=dust scaffold_80 ensembl protein_coding_gene 202183 203061 . - . ID=Physo120633;biotype=protein_coding;external_name=estExt_Genewise1.C_800049;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 202183 203061 . - . ID=Physo120633;Parent=Physo120633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 202183 202992 . - 0 ID=Physo120633;Parent=Physo120633;rank=1 scaffold_80 . exon 202183 203061 . - . ID=Physo120633.1;Parent=Physo120633;constitutive=1;ensembl_phase=-1;rank=1 scaffold_80 ensembl protein_coding_gene 203139 206184 . - . ID=Physo139968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800052;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 203139 206184 . - . ID=Physo139968;Parent=Physo139968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 203139 206184 . - . ID=Physo139968.1;Parent=Physo139968;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_80 . CDS 203140 206184 . - 0 ID=Physo139968;Parent=Physo139968;rank=1 scaffold_80 ensembl protein_coding_gene 206361 208195 . + . ID=Physo139969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800053;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 206361 208195 . + . ID=Physo139969;Parent=Physo139969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 206361 206460 . + 0 ID=Physo139969;Parent=Physo139969;rank=1 scaffold_80 . exon 206361 206460 . + . ID=Physo139969.1;Parent=Physo139969;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . CDS 206588 206644 . + 0 ID=Physo139969;Parent=Physo139969;rank=2 scaffold_80 . exon 206588 206644 . + . ID=Physo139969.2;Parent=Physo139969;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_80 . CDS 206726 206802 . + 0 ID=Physo139969;Parent=Physo139969;rank=3 scaffold_80 . exon 206726 206802 . + . ID=Physo139969.3;Parent=Physo139969;constitutive=1;ensembl_phase=1;rank=3 scaffold_80 . CDS 206877 207014 . + 0 ID=Physo139969;Parent=Physo139969;rank=4 scaffold_80 . exon 206877 207014 . + . ID=Physo139969.4;Parent=Physo139969;constitutive=1;rank=4 scaffold_80 . CDS 207097 207732 . + 0 ID=Physo139969;Parent=Physo139969;rank=5 scaffold_80 . exon 207097 207732 . + . ID=Physo139969.5;Parent=Physo139969;constitutive=1;rank=5 scaffold_80 . CDS 207813 207917 . + 0 ID=Physo139969;Parent=Physo139969;rank=6 scaffold_80 . exon 207813 208195 . + . ID=Physo139969.6;Parent=Physo139969;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_80 ensembl protein_coding_gene 208168 209003 . - . ID=Physo139970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800054;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 208168 209003 . - . ID=Physo139970;Parent=Physo139970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 208168 208789 . - . ID=Physo139970.2;Parent=Physo139970;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_80 . CDS 208606 208789 . - 0 ID=Physo139970;Parent=Physo139970;rank=2 scaffold_80 . CDS 208863 208984 . - 0 ID=Physo139970;Parent=Physo139970;rank=1 scaffold_80 . biological_region 208893 208899 0.999 + . logic_name=eponine scaffold_80 . biological_region 210150 210153 0.999 + . logic_name=eponine scaffold_80 . biological_region 210939 210945 0.999 + . logic_name=eponine scaffold_80 . biological_region 211010 211014 0.999 - . logic_name=eponine scaffold_80 . biological_region 211035 211042 0.999 - . logic_name=eponine scaffold_80 . repeat_region 211249 211296 . ? . description=trf scaffold_80 . biological_region 217606 217609 0.999 + . logic_name=eponine scaffold_80 . biological_region 217634 217638 0.999 - . logic_name=eponine scaffold_80 ensembl protein_coding_gene 215086 217798 . - . ID=Physo109251;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_800005;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 215086 217798 . - . ID=Physo109251;Parent=Physo109251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 215086 215786 . - 0 ID=Physo109251;Parent=Physo109251;rank=5 scaffold_80 . exon 215086 215786 . - . ID=Physo109251.6;Parent=Physo109251;constitutive=1;ensembl_phase=1;rank=6 scaffold_80 . CDS 215811 215857 . - 0 ID=Physo109251;Parent=Physo109251;rank=4 scaffold_80 . exon 215811 215857 . - . ID=Physo109251.5;Parent=Physo109251;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 215917 215990 . - 0 ID=Physo109251;Parent=Physo109251;rank=3 scaffold_80 . exon 215917 215990 . - . ID=Physo109251.4;Parent=Physo109251;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_80 . CDS 216057 217224 . - 0 ID=Physo109251;Parent=Physo109251;rank=2 scaffold_80 . exon 216057 217224 . - . ID=Physo109251.3;Parent=Physo109251;constitutive=1;ensembl_phase=2;rank=3 scaffold_80 . CDS 217300 217586 . - 0 ID=Physo109251;Parent=Physo109251;rank=1 scaffold_80 . exon 217300 217619 . - . ID=Physo109251.2;Parent=Physo109251;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_80 . exon 217778 217798 . - . ID=Physo109251.1;Parent=Physo109251;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_80 ensembl protein_coding_gene 213973 214718 . + . ID=Physo120640;biotype=protein_coding;external_name=estExt_Genewise1.C_800056;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 213973 214718 . + . ID=Physo120640;Parent=Physo120640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 213973 214017 . + . ID=Physo120640.1;Parent=Physo120640;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_80 . exon 214094 214162 . + . ID=Physo120640.2;Parent=Physo120640;constitutive=1;ensembl_phase=-1;rank=2 scaffold_80 . CDS 214112 214162 . + 0 ID=Physo120640;Parent=Physo120640;rank=1 scaffold_80 . CDS 214239 214310 . + 0 ID=Physo120640;Parent=Physo120640;rank=2 scaffold_80 . exon 214239 214310 . + . ID=Physo120640.3;Parent=Physo120640;constitutive=1;rank=3 scaffold_80 . CDS 214412 214531 . + 0 ID=Physo120640;Parent=Physo120640;rank=3 scaffold_80 . exon 214412 214531 . + . ID=Physo120640.4;Parent=Physo120640;constitutive=1;rank=4 scaffold_80 . CDS 214605 214718 . + 0 ID=Physo120640;Parent=Physo120640;rank=4 scaffold_80 . exon 214605 214718 . + . ID=Physo120640.5;Parent=Physo120640;constitutive=1;rank=5 scaffold_80 . exon 208863 209003 . - . ID=Physo139970.1;Parent=Physo139970;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_80 ensembl protein_coding_gene 210057 210975 . - . ID=Physo139971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800055;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 210057 210975 . - . ID=Physo139971;Parent=Physo139971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 210057 210659 . - . ID=Physo139971.2;Parent=Physo139971;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_80 . CDS 210464 210659 . - 0 ID=Physo139971;Parent=Physo139971;rank=2 scaffold_80 . CDS 210736 210890 . - 0 ID=Physo139971;Parent=Physo139971;rank=1 scaffold_80 . exon 210736 210975 . - . ID=Physo139971.1;Parent=Physo139971;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_80 ensembl protein_coding_gene 217974 220183 . + . ID=Physo139974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800058;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 217974 220183 . + . ID=Physo139974;Parent=Physo139974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 217974 220124 . + 0 ID=Physo139974;Parent=Physo139974;rank=1 scaffold_80 . exon 217974 220183 . + . ID=Physo139974.1;Parent=Physo139974;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_80 . repeat_region 220146 220153 . ? . description=dust scaffold_80 . repeat_region 222110 222263 . - . description=Polinton-1_PI scaffold_80 ensembl protein_coding_gene 223724 227537 . + . ID=Physo139975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800059;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 223724 227537 . + . ID=Physo139975;Parent=Physo139975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 223724 223773 . + 0 ID=Physo139975;Parent=Physo139975;rank=1 scaffold_80 . exon 223724 223773 . + . ID=Physo139975.1;Parent=Physo139975;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 223850 224022 . + 0 ID=Physo139975;Parent=Physo139975;rank=2 scaffold_80 . exon 223850 224022 . + . ID=Physo139975.2;Parent=Physo139975;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 224091 224576 . + 0 ID=Physo139975;Parent=Physo139975;rank=3 scaffold_80 . exon 224091 224576 . + . ID=Physo139975.3;Parent=Physo139975;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_80 . CDS 224644 224815 . + 0 ID=Physo139975;Parent=Physo139975;rank=4 scaffold_80 . exon 224644 224815 . + . ID=Physo139975.4;Parent=Physo139975;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_80 . CDS 224893 225338 . + 0 ID=Physo139975;Parent=Physo139975;rank=5 scaffold_80 . exon 224893 225338 . + . ID=Physo139975.5;Parent=Physo139975;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 225407 227475 . + 0 ID=Physo139975;Parent=Physo139975;rank=6 scaffold_80 . exon 225407 227537 . + . ID=Physo139975.6;Parent=Physo139975;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_80 ensembl protein_coding_gene 227544 228332 . - . ID=Physo139976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800060;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 227544 228332 . - . ID=Physo139976;Parent=Physo139976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 227544 228332 . - 0 ID=Physo139976;Parent=Physo139976;rank=1 scaffold_80 . exon 227544 228332 . - . ID=Physo139976.1;Parent=Physo139976;constitutive=1;rank=1 scaffold_80 . repeat_region 230098 230142 . ? . description=trf scaffold_80 . biological_region 230133 230133 0.999 + . logic_name=eponine scaffold_80 . biological_region 230221 230224 0.999 + . logic_name=eponine scaffold_80 . repeat_region 230724 230758 . ? . description=trf scaffold_80 . repeat_region 231637 231668 . ? . description=trf scaffold_80 . repeat_region 231742 231761 . ? . description=trf scaffold_80 . biological_region 232167 232173 0.999 + . logic_name=eponine scaffold_80 . repeat_region 232516 232562 . ? . description=trf scaffold_80 . repeat_region 235247 235273 . ? . description=trf scaffold_80 ensembl protein_coding_gene 231330 232683 . + . ID=Physo139978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800062;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 231330 232683 . + . ID=Physo139978;Parent=Physo139978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 231330 231820 . + . ID=Physo139978.1;Parent=Physo139978;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_80 . CDS 231372 231820 . + 0 ID=Physo139978;Parent=Physo139978;rank=1 scaffold_80 . CDS 232074 232683 . + 0 ID=Physo139978;Parent=Physo139978;rank=2 scaffold_80 . exon 232074 232683 . + . ID=Physo139978.2;Parent=Physo139978;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 ensembl protein_coding_gene 233125 234689 . + . ID=Physo139979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800063;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 233125 234689 . + . ID=Physo139979;Parent=Physo139979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 233125 234627 . + 0 ID=Physo139979;Parent=Physo139979;rank=1 scaffold_80 . exon 233125 234689 . + . ID=Physo139979.1;Parent=Physo139979;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_80 ensembl protein_coding_gene 234850 235908 . + . ID=Physo139980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800064;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 234850 235908 . + . ID=Physo139980;Parent=Physo139980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 234850 235908 . + 0 ID=Physo139980;Parent=Physo139980;rank=1 scaffold_80 . exon 234850 235908 . + . ID=Physo139980.1;Parent=Physo139980;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 230669 231051 . + . ID=Physo158072;biotype=protein_coding;external_name=C_scaffold_80000009;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 230669 231051 . + . ID=Physo158072;Parent=Physo158072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 230669 230706 . + 0 ID=Physo158072;Parent=Physo158072;rank=1 scaffold_80 . exon 230669 230706 . + . ID=Physo158072.1;Parent=Physo158072;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 230757 231051 . + 0 ID=Physo158072;Parent=Physo158072;rank=2 scaffold_80 . exon 230757 231051 . + . ID=Physo158072.2;Parent=Physo158072;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . repeat_region 242381 242411 . ? . description=dust scaffold_80 . repeat_region 243353 243411 . ? . description=dust scaffold_80 . repeat_region 247096 247152 . ? . description=dust scaffold_80 ensembl protein_coding_gene 240504 247436 . - . ID=Physo139981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800065;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 240504 247436 . - . ID=Physo139981;Parent=Physo139981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 240504 242859 . - 0 ID=Physo139981;Parent=Physo139981;rank=2 scaffold_80 . exon 240504 242859 . - . ID=Physo139981.2;Parent=Physo139981;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 243007 247436 . - 0 ID=Physo139981;Parent=Physo139981;rank=1 scaffold_80 . exon 243007 247436 . - . ID=Physo139981.1;Parent=Physo139981;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 247631 249820 . - . ID=Physo139982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800066;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 247631 249820 . - . ID=Physo139982;Parent=Physo139982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 247631 249820 . - 0 ID=Physo139982;Parent=Physo139982;rank=1 scaffold_80 . exon 247631 249820 . - . ID=Physo139982.1;Parent=Physo139982;constitutive=1;rank=1 scaffold_80 . biological_region 249561 249564 0.999 - . logic_name=eponine scaffold_80 . biological_region 249665 249670 0.999 - . logic_name=eponine scaffold_80 . biological_region 249686 249693 0.999 - . logic_name=eponine scaffold_80 . repeat_region 250486 250572 . ? . description=trf scaffold_80 . repeat_region 250542 250629 . ? . description=trf scaffold_80 . biological_region 251029 251030 0.999 - . logic_name=eponine scaffold_80 . biological_region 251801 251802 0.999 + . logic_name=eponine scaffold_80 . biological_region 251843 251845 0.999 - . logic_name=eponine scaffold_80 . biological_region 251846 251851 0.999 + . logic_name=eponine scaffold_80 . biological_region 251867 251872 0.999 + . logic_name=eponine scaffold_80 . biological_region 251886 251893 0.999 - . logic_name=eponine scaffold_80 . biological_region 251895 251899 0.999 + . logic_name=eponine scaffold_80 . biological_region 251909 251913 0.999 - . logic_name=eponine scaffold_80 . biological_region 251923 251926 0.999 - . logic_name=eponine scaffold_80 . biological_region 251934 251938 0.999 - . logic_name=eponine scaffold_80 . biological_region 251944 251947 0.999 + . logic_name=eponine scaffold_80 . biological_region 251953 251957 0.999 - . logic_name=eponine scaffold_80 . biological_region 251963 251971 0.999 + . logic_name=eponine scaffold_80 . biological_region 252068 252069 0.999 - . logic_name=eponine scaffold_80 . biological_region 252094 252103 0.999 - . logic_name=eponine scaffold_80 . biological_region 252648 252655 0.999 - . logic_name=eponine scaffold_80 . biological_region 254961 254962 0.999 - . logic_name=eponine scaffold_80 . biological_region 255401 255402 0.999 - . logic_name=eponine scaffold_80 . biological_region 255475 255476 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 251660 254695 . + . ID=Physo139983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800067;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 251660 254695 . + . ID=Physo139983;Parent=Physo139983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 251660 254695 . + 0 ID=Physo139983;Parent=Physo139983;rank=1 scaffold_80 . exon 251660 254695 . + . ID=Physo139983.1;Parent=Physo139983;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 254849 255622 . - . ID=Physo139984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800068;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 254849 255622 . - . ID=Physo139984;Parent=Physo139984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 254849 255622 . - 0 ID=Physo139984;Parent=Physo139984;rank=1 scaffold_80 . exon 254849 255622 . - . ID=Physo139984.1;Parent=Physo139984;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 257069 257884 . + . ID=Physo139985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800069;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 257069 257884 . + . ID=Physo139985;Parent=Physo139985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 257069 257884 . + 0 ID=Physo139985;Parent=Physo139985;rank=1 scaffold_80 . exon 257069 257884 . + . ID=Physo139985.1;Parent=Physo139985;constitutive=1;rank=1 scaffold_80 . repeat_region 263990 264002 . ? . description=dust scaffold_80 ensembl protein_coding_gene 259993 263808 . + . ID=Physo109252;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_800006;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 259993 263808 . + . ID=Physo109252;Parent=Physo109252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 259993 260361 . + 0 ID=Physo109252;Parent=Physo109252;rank=1 scaffold_80 . exon 259993 260361 . + . ID=Physo109252.1;Parent=Physo109252;constitutive=1;rank=1 scaffold_80 . CDS 260389 263808 . + 0 ID=Physo109252;Parent=Physo109252;rank=2 scaffold_80 . exon 260389 263808 . + . ID=Physo109252.2;Parent=Physo109252;constitutive=1;rank=2 scaffold_80 ensembl protein_coding_gene 258287 259549 . - . ID=Physo139986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800070;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 258287 259549 . - . ID=Physo139986;Parent=Physo139986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 258287 259549 . - 0 ID=Physo139986;Parent=Physo139986;rank=1 scaffold_80 . exon 258287 259549 . - . ID=Physo139986.1;Parent=Physo139986;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 264405 268251 . + . ID=Physo158078;biotype=protein_coding;external_name=C_scaffold_80000015;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 264405 268251 . + . ID=Physo158078;Parent=Physo158078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 264405 264929 . + 0 ID=Physo158078;Parent=Physo158078;rank=1 scaffold_80 . exon 264405 264929 . + . ID=Physo158078.1;Parent=Physo158078;constitutive=1;rank=1 scaffold_80 . CDS 264972 265215 . + 0 ID=Physo158078;Parent=Physo158078;rank=2 scaffold_80 . exon 264972 265215 . + . ID=Physo158078.2;Parent=Physo158078;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_80 . CDS 265450 265678 . + 0 ID=Physo158078;Parent=Physo158078;rank=3 scaffold_80 . exon 265450 265678 . + . ID=Physo158078.3;Parent=Physo158078;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_80 . CDS 265829 265908 . + 0 ID=Physo158078;Parent=Physo158078;rank=4 scaffold_80 . exon 265829 265908 . + . ID=Physo158078.4;Parent=Physo158078;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_80 . CDS 266032 266263 . + 0 ID=Physo158078;Parent=Physo158078;rank=5 scaffold_80 . exon 266032 266263 . + . ID=Physo158078.5;Parent=Physo158078;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_80 . CDS 266792 266802 . + 0 ID=Physo158078;Parent=Physo158078;rank=6 scaffold_80 . exon 266792 266802 . + . ID=Physo158078.6;Parent=Physo158078;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_80 . CDS 267228 267426 . + 0 ID=Physo158078;Parent=Physo158078;rank=7 scaffold_80 . exon 267228 267426 . + . ID=Physo158078.7;Parent=Physo158078;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_80 . CDS 267514 268042 . + 0 ID=Physo158078;Parent=Physo158078;rank=8 scaffold_80 . exon 267514 268042 . + . ID=Physo158078.8;Parent=Physo158078;constitutive=1;ensembl_phase=2;rank=8 scaffold_80 . CDS 268069 268251 . + 0 ID=Physo158078;Parent=Physo158078;rank=9 scaffold_80 . biological_region 271160 271160 0.999 - . logic_name=eponine scaffold_80 . repeat_region 271735 271784 . ? . description=trf scaffold_80 . repeat_region 271764 271810 . ? . description=trf scaffold_80 . biological_region 272333 272338 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 273601 274327 . - . ID=Physo139989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800073;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 273601 274327 . - . ID=Physo139989;Parent=Physo139989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 273601 274327 . - . ID=Physo139989.1;Parent=Physo139989;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_80 . CDS 273672 274277 . - 0 ID=Physo139989;Parent=Physo139989;rank=1 scaffold_80 . exon 268069 268251 . + . ID=Physo158078.9;Parent=Physo158078;constitutive=1;rank=9 scaffold_80 . repeat_region 283293 283310 . ? . description=dust scaffold_80 ensembl protein_coding_gene 278576 280258 . - . ID=Physo139990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800074;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 278576 280258 . - . ID=Physo139990;Parent=Physo139990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 278576 280258 . - 0 ID=Physo139990;Parent=Physo139990;rank=1 scaffold_80 . exon 278576 280258 . - . ID=Physo139990.1;Parent=Physo139990;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 282992 285673 . + . ID=Physo139991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800075;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 282992 285673 . + . ID=Physo139991;Parent=Physo139991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 282992 285673 . + 0 ID=Physo139991;Parent=Physo139991;rank=1 scaffold_80 . exon 282992 285673 . + . ID=Physo139991.1;Parent=Physo139991;constitutive=1;rank=1 scaffold_80 . biological_region 290033 290035 0.999 + . logic_name=eponine scaffold_80 . biological_region 292251 292252 0.999 + . logic_name=eponine scaffold_80 . repeat_region 294845 294883 . ? . description=trf scaffold_80 . repeat_region 297147 297171 . ? . description=trf scaffold_80 ensembl protein_coding_gene 288391 289580 . - . ID=Physo139992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800076;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 288391 289580 . - . ID=Physo139992;Parent=Physo139992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 288391 288977 . - 0 ID=Physo139992;Parent=Physo139992;rank=4 scaffold_80 . exon 288391 288977 . - . ID=Physo139992.4;Parent=Physo139992;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 . CDS 289054 289127 . - 0 ID=Physo139992;Parent=Physo139992;rank=3 scaffold_80 . exon 289054 289127 . - . ID=Physo139992.3;Parent=Physo139992;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_80 . CDS 289206 289361 . - 0 ID=Physo139992;Parent=Physo139992;rank=2 scaffold_80 . exon 289206 289361 . - . ID=Physo139992.2;Parent=Physo139992;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_80 . CDS 289456 289580 . - 0 ID=Physo139992;Parent=Physo139992;rank=1 scaffold_80 . exon 289456 289580 . - . ID=Physo139992.1;Parent=Physo139992;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 289775 294145 . + . ID=Physo139993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800077;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 289775 294145 . + . ID=Physo139993;Parent=Physo139993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 289775 294145 . + 0 ID=Physo139993;Parent=Physo139993;rank=1 scaffold_80 . exon 289775 294145 . + . ID=Physo139993.1;Parent=Physo139993;constitutive=1;rank=1 scaffold_80 . repeat_region 298759 298767 . ? . description=dust scaffold_80 . repeat_region 298772 298781 . ? . description=dust scaffold_80 . repeat_region 301055 310325 . ? . description=dust scaffold_80 ensembl protein_coding_gene 297842 299454 . - . ID=Physo139994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800078;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 297842 299454 . - . ID=Physo139994;Parent=Physo139994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 297842 297877 . - 0 ID=Physo139994;Parent=Physo139994;rank=3 scaffold_80 . exon 297842 297877 . - . ID=Physo139994.3;Parent=Physo139994;constitutive=1;rank=3 scaffold_80 . CDS 298063 298756 . - 0 ID=Physo139994;Parent=Physo139994;rank=2 scaffold_80 . exon 298063 298756 . - . ID=Physo139994.2;Parent=Physo139994;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 298823 299454 . - 0 ID=Physo139994;Parent=Physo139994;rank=1 scaffold_80 . exon 298823 299454 . - . ID=Physo139994.1;Parent=Physo139994;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 300039 300374 . - . ID=Physo139995;biotype=protein_coding;description=Avirulence effector protein Avr3aPsAvh92a1 Avr3a1PsAvh92a2 Avr3a2 [Source:UniProtKB/TrEMBL%3BAcc:A5YTY8];external_name=AVR3A;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 300039 300374 . - . ID=Physo139995;Parent=Physo139995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 300039 300374 . - 0 ID=Physo139995;Parent=Physo139995;rank=1 scaffold_80 . exon 300039 300374 . - . ID=Physo139995.1;Parent=Physo139995;constitutive=1;rank=1 scaffold_80 . repeat_region 311846 311888 . ? . description=trf scaffold_80 . repeat_region 311847 311888 . ? . description=trf scaffold_80 . biological_region 315372 315378 0.999 + . logic_name=eponine scaffold_80 . biological_region 315395 315401 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 312303 316435 . - . ID=Physo139996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800080;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 312303 316435 . - . ID=Physo139996;Parent=Physo139996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 312303 314027 . - . ID=Physo139996.4;Parent=Physo139996;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_80 . CDS 312558 314027 . - 0 ID=Physo139996;Parent=Physo139996;rank=4 scaffold_80 . CDS 314237 314930 . - 0 ID=Physo139996;Parent=Physo139996;rank=3 scaffold_80 . exon 314237 314930 . - . ID=Physo139996.3;Parent=Physo139996;constitutive=1;ensembl_phase=2;rank=3 scaffold_80 . CDS 314997 315607 . - 0 ID=Physo139996;Parent=Physo139996;rank=2 scaffold_80 . exon 314997 315607 . - . ID=Physo139996.2;Parent=Physo139996;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_80 . CDS 316238 316435 . - 0 ID=Physo139996;Parent=Physo139996;rank=1 scaffold_80 . exon 316238 316435 . - . ID=Physo139996.1;Parent=Physo139996;constitutive=1;rank=1 scaffold_80 . repeat_region 321581 321704 . ? . description=dust scaffold_80 ensembl protein_coding_gene 322490 325532 . - . ID=Physo139997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800081;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 322490 325532 . - . ID=Physo139997;Parent=Physo139997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 322490 324221 . - . ID=Physo139997.6;Parent=Physo139997;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_80 . CDS 322745 324221 . - 0 ID=Physo139997;Parent=Physo139997;rank=6 scaffold_80 . CDS 324365 324433 . - 0 ID=Physo139997;Parent=Physo139997;rank=5 scaffold_80 . exon 324365 324433 . - . ID=Physo139997.5;Parent=Physo139997;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_80 . CDS 324510 324569 . - 0 ID=Physo139997;Parent=Physo139997;rank=4 scaffold_80 . exon 324510 324569 . - . ID=Physo139997.4;Parent=Physo139997;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_80 . CDS 324646 324711 . - 0 ID=Physo139997;Parent=Physo139997;rank=3 scaffold_80 . exon 324646 324711 . - . ID=Physo139997.3;Parent=Physo139997;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 324777 325025 . - 0 ID=Physo139997;Parent=Physo139997;rank=2 scaffold_80 . exon 324777 325025 . - . ID=Physo139997.2;Parent=Physo139997;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_80 . CDS 325111 325532 . - 0 ID=Physo139997;Parent=Physo139997;rank=1 scaffold_80 . exon 325111 325532 . - . ID=Physo139997.1;Parent=Physo139997;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . biological_region 329080 329083 0.999 - . logic_name=eponine scaffold_80 . biological_region 329366 329368 0.999 - . logic_name=eponine scaffold_80 . repeat_region 330726 330796 . ? . description=trf scaffold_80 . repeat_region 331161 331180 . ? . description=trf scaffold_80 ensembl protein_coding_gene 328553 329882 . + . ID=Physo139998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800082;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 328553 329882 . + . ID=Physo139998;Parent=Physo139998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 328553 329203 . + . ID=Physo139998.1;Parent=Physo139998;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_80 . CDS 328557 329203 . + 0 ID=Physo139998;Parent=Physo139998;rank=1 scaffold_80 . CDS 329276 329699 . + 0 ID=Physo139998;Parent=Physo139998;rank=2 scaffold_80 . exon 329276 329882 . + . ID=Physo139998.2;Parent=Physo139998;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_80 ensembl protein_coding_gene 329933 331461 . - . ID=Physo139999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800083;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 329933 331461 . - . ID=Physo139999;Parent=Physo139999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 329933 330002 . - 0 ID=Physo139999;Parent=Physo139999;rank=2 scaffold_80 . exon 329933 330002 . - . ID=Physo139999.2;Parent=Physo139999;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 330074 331461 . - 0 ID=Physo139999;Parent=Physo139999;rank=1 scaffold_80 . exon 330074 331461 . - . ID=Physo139999.1;Parent=Physo139999;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 333293 334167 . + . ID=Physo140000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800084;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 333293 334167 . + . ID=Physo140000;Parent=Physo140000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 333293 333701 . + 0 ID=Physo140000;Parent=Physo140000;rank=1 scaffold_80 . exon 333293 333701 . + . ID=Physo140000.1;Parent=Physo140000;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_80 . CDS 333839 334167 . + 0 ID=Physo140000;Parent=Physo140000;rank=2 scaffold_80 . exon 333839 334167 . + . ID=Physo140000.2;Parent=Physo140000;constitutive=1;ensembl_phase=1;rank=2 scaffold_80 ensembl protein_coding_gene 335107 338764 . + . ID=Physo140001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800085;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 335107 338764 . + . ID=Physo140001;Parent=Physo140001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 335107 335141 . + 0 ID=Physo140001;Parent=Physo140001;rank=1 scaffold_80 . exon 335107 335141 . + . ID=Physo140001.1;Parent=Physo140001;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 335186 335271 . + 0 ID=Physo140001;Parent=Physo140001;rank=2 scaffold_80 . exon 335186 335271 . + . ID=Physo140001.2;Parent=Physo140001;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 335352 335840 . + 0 ID=Physo140001;Parent=Physo140001;rank=3 scaffold_80 . exon 335352 335840 . + . ID=Physo140001.3;Parent=Physo140001;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_80 . CDS 335909 336077 . + 0 ID=Physo140001;Parent=Physo140001;rank=4 scaffold_80 . exon 335909 336077 . + . ID=Physo140001.4;Parent=Physo140001;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_80 . CDS 336150 336595 . + 0 ID=Physo140001;Parent=Physo140001;rank=5 scaffold_80 . exon 336150 336595 . + . ID=Physo140001.5;Parent=Physo140001;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_80 . CDS 336663 338764 . + 0 ID=Physo140001;Parent=Physo140001;rank=6 scaffold_80 . exon 336663 338764 . + . ID=Physo140001.6;Parent=Physo140001;constitutive=1;ensembl_phase=1;rank=6 scaffold_80 . repeat_region 339496 339537 . ? . description=dust scaffold_80 . repeat_region 339496 339537 . + . description=(ACTTG)n scaffold_80 . repeat_region 344985 344994 . ? . description=dust scaffold_80 ensembl protein_coding_gene 338886 339485 . - . ID=Physo140002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800086;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 338886 339485 . - . ID=Physo140002;Parent=Physo140002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 338886 339485 . - 0 ID=Physo140002;Parent=Physo140002;rank=1 scaffold_80 . exon 338886 339485 . - . ID=Physo140002.1;Parent=Physo140002;constitutive=1;rank=1 scaffold_80 ensembl protein_coding_gene 341150 343655 . + . ID=Physo140003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800087;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 341150 343655 . + . ID=Physo140003;Parent=Physo140003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 341150 341352 . + 0 ID=Physo140003;Parent=Physo140003;rank=1 scaffold_80 . exon 341150 341352 . + . ID=Physo140003.1;Parent=Physo140003;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 341417 341665 . + 0 ID=Physo140003;Parent=Physo140003;rank=2 scaffold_80 . exon 341417 341665 . + . ID=Physo140003.2;Parent=Physo140003;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_80 . CDS 341736 341801 . + 0 ID=Physo140003;Parent=Physo140003;rank=3 scaffold_80 . exon 341736 341801 . + . ID=Physo140003.3;Parent=Physo140003;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 341872 341931 . + 0 ID=Physo140003;Parent=Physo140003;rank=4 scaffold_80 . exon 341872 341931 . + . ID=Physo140003.4;Parent=Physo140003;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_80 . CDS 342006 342074 . + 0 ID=Physo140003;Parent=Physo140003;rank=5 scaffold_80 . exon 342006 342074 . + . ID=Physo140003.5;Parent=Physo140003;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_80 . CDS 342140 343655 . + 0 ID=Physo140003;Parent=Physo140003;rank=6 scaffold_80 . exon 342140 343655 . + . ID=Physo140003.6;Parent=Physo140003;constitutive=1;ensembl_phase=2;rank=6 scaffold_80 ensembl protein_coding_gene 344187 347094 . + . ID=Physo158080;biotype=protein_coding;external_name=C_scaffold_80000017;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 344187 347094 . + . ID=Physo158080;Parent=Physo158080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 344187 344596 . + 0 ID=Physo158080;Parent=Physo158080;rank=1 scaffold_80 . exon 344187 344596 . + . ID=Physo158080.1;Parent=Physo158080;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . CDS 344681 344929 . + 0 ID=Physo158080;Parent=Physo158080;rank=2 scaffold_80 . exon 344681 344929 . + . ID=Physo158080.2;Parent=Physo158080;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_80 . CDS 345001 345066 . + 0 ID=Physo158080;Parent=Physo158080;rank=3 scaffold_80 . exon 345001 345066 . + . ID=Physo158080.3;Parent=Physo158080;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_80 . CDS 345142 345201 . + 0 ID=Physo158080;Parent=Physo158080;rank=4 scaffold_80 . exon 345142 345201 . + . ID=Physo158080.4;Parent=Physo158080;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_80 . CDS 345280 345348 . + 0 ID=Physo158080;Parent=Physo158080;rank=5 scaffold_80 . exon 345280 345348 . + . ID=Physo158080.5;Parent=Physo158080;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_80 . CDS 345420 346078 . + 0 ID=Physo158080;Parent=Physo158080;rank=6 scaffold_80 . exon 345420 346078 . + . ID=Physo158080.6;Parent=Physo158080;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_80 . CDS 346151 347094 . + 0 ID=Physo158080;Parent=Physo158080;rank=7 scaffold_80 . exon 346151 347094 . + . ID=Physo158080.7;Parent=Physo158080;constitutive=1;ensembl_phase=1;rank=7 scaffold_80 . biological_region 347744 347746 0.999 + . logic_name=eponine scaffold_80 . biological_region 350876 350880 0.999 - . logic_name=eponine scaffold_80 . biological_region 350933 350937 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 349693 351371 . - . ID=Physo109253;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_800007;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 349693 351371 . - . ID=Physo109253;Parent=Physo109253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . exon 349693 351371 . - . ID=Physo109253.1;Parent=Physo109253;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_80 . CDS 349799 351307 . - 0 ID=Physo109253;Parent=Physo109253;rank=1 scaffold_80 ensembl protein_coding_gene 347501 349103 . - . ID=Physo140005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800089;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 347501 349103 . - . ID=Physo140005;Parent=Physo140005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 347501 348788 . - 0 ID=Physo140005;Parent=Physo140005;rank=2 scaffold_80 . exon 347501 348788 . - . ID=Physo140005.2;Parent=Physo140005;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 348880 349103 . - 0 ID=Physo140005;Parent=Physo140005;rank=1 scaffold_80 . exon 348880 349103 . - . ID=Physo140005.1;Parent=Physo140005;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 ensembl protein_coding_gene 353510 354945 . - . ID=Physo140007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800091;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 353510 354945 . - . ID=Physo140007;Parent=Physo140007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 353510 353530 . - 0 ID=Physo140007;Parent=Physo140007;rank=3 scaffold_80 . exon 353510 353530 . - . ID=Physo140007.3;Parent=Physo140007;constitutive=1;rank=3 scaffold_80 . CDS 353710 354091 . - 0 ID=Physo140007;Parent=Physo140007;rank=2 scaffold_80 . exon 353710 354091 . - . ID=Physo140007.2;Parent=Physo140007;constitutive=1;ensembl_phase=2;rank=2 scaffold_80 . CDS 354383 354945 . - 0 ID=Physo140007;Parent=Physo140007;rank=1 scaffold_80 . exon 354383 354945 . - . ID=Physo140007.1;Parent=Physo140007;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_80 . repeat_region 356045 361193 . ? . description=dust scaffold_80 . repeat_region 361990 361998 . ? . description=dust scaffold_80 ensembl protein_coding_gene 365730 366845 . - . ID=Physo120593;biotype=protein_coding;external_name=estExt_Genewise1.C_800009;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 365730 366845 . - . ID=Physo120593;Parent=Physo120593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 365730 366827 . - 0 ID=Physo120593;Parent=Physo120593;rank=1 scaffold_80 . exon 365730 366845 . - . ID=Physo120593.1;Parent=Physo120593;constitutive=1;ensembl_phase=-1;rank=1 scaffold_80 ensembl protein_coding_gene 362236 364176 . + . ID=Physo140008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800092;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 362236 364176 . + . ID=Physo140008;Parent=Physo140008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 362236 363498 . + 0 ID=Physo140008;Parent=Physo140008;rank=1 scaffold_80 . exon 362236 363498 . + . ID=Physo140008.1;Parent=Physo140008;constitutive=1;rank=1 scaffold_80 . CDS 363620 363648 . + 0 ID=Physo140008;Parent=Physo140008;rank=2 scaffold_80 . exon 363620 363648 . + . ID=Physo140008.2;Parent=Physo140008;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_80 . CDS 363761 363792 . + 0 ID=Physo140008;Parent=Physo140008;rank=3 scaffold_80 . exon 363761 363792 . + . ID=Physo140008.3;Parent=Physo140008;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_80 . CDS 363848 364176 . + 0 ID=Physo140008;Parent=Physo140008;rank=4 scaffold_80 . exon 363848 364176 . + . ID=Physo140008.4;Parent=Physo140008;constitutive=1;ensembl_phase=1;rank=4 scaffold_80 . biological_region 367348 367352 0.999 - . logic_name=eponine scaffold_80 . biological_region 367408 367408 0.999 + . logic_name=eponine scaffold_80 . biological_region 368614 368615 0.999 + . logic_name=eponine scaffold_80 . biological_region 368886 368889 0.999 - . logic_name=eponine scaffold_80 . biological_region 371662 371665 0.999 + . logic_name=eponine scaffold_80 . biological_region 372492 372495 0.999 - . logic_name=eponine scaffold_80 . biological_region 374337 374342 0.999 - . logic_name=eponine scaffold_80 . biological_region 374421 374422 0.999 + . logic_name=eponine scaffold_80 . biological_region 376708 376712 0.999 + . logic_name=eponine scaffold_80 . biological_region 376726 376729 0.999 + . logic_name=eponine scaffold_80 ensembl protein_coding_gene 371650 373136 . + . ID=Physo140010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800094;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 371650 373136 . + . ID=Physo140010;Parent=Physo140010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 371650 371880 . + 0 ID=Physo140010;Parent=Physo140010;rank=1 scaffold_80 . exon 371650 371880 . + . ID=Physo140010.1;Parent=Physo140010;constitutive=1;rank=1 scaffold_80 . CDS 371979 373136 . + 0 ID=Physo140010;Parent=Physo140010;rank=2 scaffold_80 . exon 371979 373136 . + . ID=Physo140010.2;Parent=Physo140010;constitutive=1;rank=2 scaffold_80 ensembl protein_coding_gene 373778 377134 . - . ID=Physo140011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_800095;logic_name=jgi_physo1_1 scaffold_80 ensembl transcript 373778 377134 . - . ID=Physo140011;Parent=Physo140011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_80 . CDS 373778 377134 . - 0 ID=Physo140011;Parent=Physo140011;rank=1 scaffold_80 . exon 373778 377134 . - . ID=Physo140011.1;Parent=Physo140011;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_79 1 378037 scaffold_79 . repeat_region 1 283 . ? . description=dust scaffold_79 . repeat_region 1 336 . ? . description=trf scaffold_79 . repeat_region 7 214 . + . description=(CCCTAA)n scaffold_79 . repeat_region 1206 1213 . ? . description=dust scaffold_79 . repeat_region 1241 2706 . ? . description=dust scaffold_79 . repeat_region 2383 2706 . ? . description=trf scaffold_79 . repeat_region 2704 2733 . ? . description=trf scaffold_79 . repeat_region 3291 4889 . ? . description=dust scaffold_79 . biological_region 6431 6432 0.999 + . logic_name=eponine scaffold_79 . biological_region 6453 6456 0.999 + . logic_name=eponine scaffold_79 . biological_region 6883 6884 0.999 + . logic_name=eponine scaffold_79 . biological_region 6901 6902 0.999 - . logic_name=eponine scaffold_79 . repeat_region 7470 9854 . + . description=GypsyPi-1c_I-int scaffold_79 . biological_region 9258 9261 0.999 + . logic_name=eponine scaffold_79 ensembl protein_coding_gene 6193 10154 . + . ID=Physo139822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790001;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 6193 10154 . + . ID=Physo139822;Parent=Physo139822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 6193 8229 . + 0 ID=Physo139822;Parent=Physo139822;rank=1 scaffold_79 . exon 6193 8229 . + . ID=Physo139822.1;Parent=Physo139822;constitutive=1;rank=1 scaffold_79 . CDS 8314 8481 . + 0 ID=Physo139822;Parent=Physo139822;rank=2 scaffold_79 . exon 8314 8481 . + . ID=Physo139822.2;Parent=Physo139822;constitutive=1;rank=2 scaffold_79 . CDS 8575 9666 . + 0 ID=Physo139822;Parent=Physo139822;rank=3 scaffold_79 . exon 8575 9666 . + . ID=Physo139822.3;Parent=Physo139822;constitutive=1;rank=3 scaffold_79 . CDS 9798 10154 . + 0 ID=Physo139822;Parent=Physo139822;rank=4 scaffold_79 . exon 9798 10154 . + . ID=Physo139822.4;Parent=Physo139822;constitutive=1;rank=4 scaffold_79 ensembl protein_coding_gene 10417 11916 . - . ID=Physo139823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790002;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 10417 11916 . - . ID=Physo139823;Parent=Physo139823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 10417 11419 . - 0 ID=Physo139823;Parent=Physo139823;rank=2 scaffold_79 . exon 10417 11419 . - . ID=Physo139823.2;Parent=Physo139823;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 11552 11916 . - 0 ID=Physo139823;Parent=Physo139823;rank=1 scaffold_79 . exon 11552 11916 . - . ID=Physo139823.1;Parent=Physo139823;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . biological_region 20638 20642 0.999 - . logic_name=eponine scaffold_79 . repeat_region 22054 22061 . ? . description=dust scaffold_79 . biological_region 23391 23394 0.999 - . logic_name=eponine scaffold_79 . repeat_region 23975 25591 . - . description=Sola3-1_PS scaffold_79 . repeat_region 25642 26538 . - . description=Sola3-1_PS scaffold_79 . repeat_region 27274 27282 . ? . description=dust scaffold_79 . biological_region 27472 27473 0.999 - . logic_name=eponine scaffold_79 . repeat_region 32634 32676 . ? . description=trf scaffold_79 . repeat_region 32637 32686 . ? . description=trf scaffold_79 . repeat_region 33145 33449 . + . description=GypsyPi-1c_LTR scaffold_79 . repeat_region 33450 40212 . + . description=GypsyPi-1c_I-int scaffold_79 . repeat_region 35288 35450 . ? . description=trf scaffold_79 . repeat_region 35429 35499 . ? . description=trf scaffold_79 ensembl protein_coding_gene 34209 39256 . + . ID=Physo139824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790003;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 34209 39256 . + . ID=Physo139824;Parent=Physo139824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 34209 34485 . + 0 ID=Physo139824;Parent=Physo139824;rank=1 scaffold_79 . exon 34209 34485 . + . ID=Physo139824.1;Parent=Physo139824;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . CDS 34614 35203 . + 0 ID=Physo139824;Parent=Physo139824;rank=2 scaffold_79 . exon 34614 35203 . + . ID=Physo139824.2;Parent=Physo139824;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 35250 35284 . + 0 ID=Physo139824;Parent=Physo139824;rank=3 scaffold_79 . exon 35250 35284 . + . ID=Physo139824.3;Parent=Physo139824;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_79 . CDS 35543 36191 . + 0 ID=Physo139824;Parent=Physo139824;rank=4 scaffold_79 . exon 35543 36191 . + . ID=Physo139824.4;Parent=Physo139824;constitutive=1;ensembl_phase=2;rank=4 scaffold_79 . CDS 36276 36490 . + 0 ID=Physo139824;Parent=Physo139824;rank=5 scaffold_79 . exon 36276 36490 . + . ID=Physo139824.5;Parent=Physo139824;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_79 . CDS 36562 36663 . + 0 ID=Physo139824;Parent=Physo139824;rank=6 scaffold_79 . exon 36562 36663 . + . ID=Physo139824.6;Parent=Physo139824;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_79 . CDS 36824 37600 . + 0 ID=Physo139824;Parent=Physo139824;rank=7 scaffold_79 . exon 36824 37600 . + . ID=Physo139824.7;Parent=Physo139824;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_79 . CDS 37640 37886 . + 0 ID=Physo139824;Parent=Physo139824;rank=8 scaffold_79 . exon 37640 37886 . + . ID=Physo139824.8;Parent=Physo139824;constitutive=1;ensembl_phase=2;rank=8 scaffold_79 . CDS 37924 38361 . + 0 ID=Physo139824;Parent=Physo139824;rank=9 scaffold_79 . exon 37924 38361 . + . ID=Physo139824.9;Parent=Physo139824;constitutive=1;rank=9 scaffold_79 . CDS 38534 39256 . + 0 ID=Physo139824;Parent=Physo139824;rank=10 scaffold_79 . exon 38534 39256 . + . ID=Physo139824.10;Parent=Physo139824;constitutive=1;rank=10 scaffold_79 ensembl protein_coding_gene 39787 40917 . - . ID=Physo139825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790004;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 39787 40917 . - . ID=Physo139825;Parent=Physo139825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 39787 40917 . - 0 ID=Physo139825;Parent=Physo139825;rank=1 scaffold_79 . exon 39787 40917 . - . ID=Physo139825.1;Parent=Physo139825;constitutive=1;rank=1 scaffold_79 . biological_region 40290 40291 0.999 - . logic_name=eponine scaffold_79 . biological_region 40650 40656 0.999 - . logic_name=eponine scaffold_79 . biological_region 40708 40708 0.999 + . logic_name=eponine scaffold_79 . biological_region 40848 40851 0.999 - . logic_name=eponine scaffold_79 . biological_region 45008 45010 0.999 + . logic_name=eponine scaffold_79 . biological_region 45367 45369 0.999 + . logic_name=eponine scaffold_79 . repeat_region 47642 47655 . ? . description=dust scaffold_79 ensembl protein_coding_gene 47655 51425 . + . ID=Physo139826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790005;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 47655 51425 . + . ID=Physo139826;Parent=Physo139826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 47655 47869 . + 0 ID=Physo139826;Parent=Physo139826;rank=1 scaffold_79 . exon 47655 47869 . + . ID=Physo139826.1;Parent=Physo139826;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 48005 48132 . + 0 ID=Physo139826;Parent=Physo139826;rank=2 scaffold_79 . exon 48005 48132 . + . ID=Physo139826.2;Parent=Physo139826;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 48414 48454 . + 0 ID=Physo139826;Parent=Physo139826;rank=3 scaffold_79 . exon 48414 48454 . + . ID=Physo139826.3;Parent=Physo139826;constitutive=1;ensembl_phase=1;rank=3 scaffold_79 . CDS 48597 50432 . + 0 ID=Physo139826;Parent=Physo139826;rank=4 scaffold_79 . exon 48597 50432 . + . ID=Physo139826.4;Parent=Physo139826;constitutive=1;rank=4 scaffold_79 . CDS 50528 51378 . + 0 ID=Physo139826;Parent=Physo139826;rank=5 scaffold_79 . CDS 51419 51425 . + 0 ID=Physo139826;Parent=Physo139826;rank=6 scaffold_79 . repeat_region 48668 51046 . + . description=GypsyPi-1c_I-int scaffold_79 . repeat_region 51203 51252 . ? . description=trf scaffold_79 . exon 50528 51378 . + . ID=Physo139826.5;Parent=Physo139826;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_79 . exon 51419 51425 . + . ID=Physo139826.6;Parent=Physo139826;constitutive=1;ensembl_phase=2;rank=6 scaffold_79 ensembl protein_coding_gene 53872 54912 . - . ID=Physo139827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790006;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 53872 54912 . - . ID=Physo139827;Parent=Physo139827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 53872 54912 . - 0 ID=Physo139827;Parent=Physo139827;rank=1 scaffold_79 . exon 53872 54912 . - . ID=Physo139827.1;Parent=Physo139827;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 57127 57899 . + . ID=Physo139828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790007;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 57127 57899 . + . ID=Physo139828;Parent=Physo139828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 57127 57899 . + . ID=Physo139828.1;Parent=Physo139828;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_79 . CDS 57154 57849 . + 0 ID=Physo139828;Parent=Physo139828;rank=1 scaffold_79 ensembl protein_coding_gene 58126 59077 . + . ID=Physo139829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790008;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 58126 59077 . + . ID=Physo139829;Parent=Physo139829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 58126 58992 . + 0 ID=Physo139829;Parent=Physo139829;rank=1 scaffold_79 . exon 58126 59077 . + . ID=Physo139829.1;Parent=Physo139829;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_79 ensembl protein_coding_gene 59528 62239 . + . ID=Physo139830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790009;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 59528 62239 . + . ID=Physo139830;Parent=Physo139830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 59528 62239 . + 0 ID=Physo139830;Parent=Physo139830;rank=1 scaffold_79 . exon 59528 62239 . + . ID=Physo139830.1;Parent=Physo139830;constitutive=1;rank=1 scaffold_79 . repeat_region 64749 64756 . ? . description=dust scaffold_79 . repeat_region 65925 65934 . ? . description=dust scaffold_79 . repeat_region 67018 67322 . - . description=GypsyPi-1c_LTR scaffold_79 . repeat_region 69695 70044 . - . description=GypsyPi-1c_I-int scaffold_79 . repeat_region 69728 69952 . ? . description=trf scaffold_79 . repeat_region 70222 70401 . - . description=GypsyPi-1c_I-int scaffold_79 . repeat_region 70456 70493 . ? . description=trf scaffold_79 . biological_region 73167 73170 0.999 + . logic_name=eponine scaffold_79 . biological_region 73334 73335 0.999 + . logic_name=eponine scaffold_79 . biological_region 73361 73362 0.999 - . logic_name=eponine scaffold_79 . biological_region 73437 73437 0.999 + . logic_name=eponine scaffold_79 . biological_region 74533 74536 0.999 + . logic_name=eponine scaffold_79 . biological_region 74551 74554 0.999 - . logic_name=eponine scaffold_79 . repeat_region 74719 75041 . - . description=GypsyPi-1c_I-int scaffold_79 . biological_region 77792 77795 0.999 + . logic_name=eponine scaffold_79 . biological_region 77959 77960 0.999 + . logic_name=eponine scaffold_79 . biological_region 77986 77987 0.999 - . logic_name=eponine scaffold_79 . biological_region 78062 78062 0.999 + . logic_name=eponine scaffold_79 . biological_region 78586 78588 0.999 - . logic_name=eponine scaffold_79 ensembl protein_coding_gene 74269 75211 . - . ID=Physo139831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790010;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 74269 75211 . - . ID=Physo139831;Parent=Physo139831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 74269 74502 . - 0 ID=Physo139831;Parent=Physo139831;rank=2 scaffold_79 . exon 74269 74502 . - . ID=Physo139831.2;Parent=Physo139831;constitutive=1;rank=2 scaffold_79 . CDS 74786 75211 . - 0 ID=Physo139831;Parent=Physo139831;rank=1 scaffold_79 . exon 74786 75211 . - . ID=Physo139831.1;Parent=Physo139831;constitutive=1;rank=1 scaffold_79 . repeat_region 84924 87240 . ? . description=dust scaffold_79 . repeat_region 87241 87562 . ? . description=dust scaffold_79 . repeat_region 89425 89474 . ? . description=dust scaffold_79 ensembl protein_coding_gene 80066 82395 . - . ID=Physo139832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790011;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 80066 82395 . - . ID=Physo139832;Parent=Physo139832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 80066 80422 . - 0 ID=Physo139832;Parent=Physo139832;rank=4 scaffold_79 . exon 80066 80422 . - . ID=Physo139832.4;Parent=Physo139832;constitutive=1;rank=4 scaffold_79 . CDS 80518 81180 . - 0 ID=Physo139832;Parent=Physo139832;rank=3 scaffold_79 . exon 80518 81180 . - . ID=Physo139832.3;Parent=Physo139832;constitutive=1;rank=3 scaffold_79 . CDS 81274 81441 . - 0 ID=Physo139832;Parent=Physo139832;rank=2 scaffold_79 . exon 81274 81441 . - . ID=Physo139832.2;Parent=Physo139832;constitutive=1;rank=2 scaffold_79 . CDS 81526 82395 . - 0 ID=Physo139832;Parent=Physo139832;rank=1 scaffold_79 . exon 81526 82395 . - . ID=Physo139832.1;Parent=Physo139832;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 87884 88402 . + . ID=Physo139833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790012;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 87884 88402 . + . ID=Physo139833;Parent=Physo139833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 87884 88402 . + 0 ID=Physo139833;Parent=Physo139833;rank=1 scaffold_79 . exon 87884 88402 . + . ID=Physo139833.1;Parent=Physo139833;constitutive=1;rank=1 scaffold_79 . repeat_region 90182 91408 . - . description=GypsyPi-1c_I-int scaffold_79 . repeat_region 91409 91711 . - . description=GypsyPi-1c_LTR scaffold_79 . biological_region 94202 94206 0.999 + . logic_name=eponine scaffold_79 . biological_region 94910 94913 0.999 + . logic_name=eponine scaffold_79 . biological_region 94916 94917 0.999 - . logic_name=eponine scaffold_79 . repeat_region 94921 95039 . ? . description=trf scaffold_79 . biological_region 94930 94936 0.999 + . logic_name=eponine scaffold_79 . repeat_region 94960 95105 . ? . description=trf scaffold_79 . repeat_region 94999 95069 . ? . description=trf scaffold_79 . biological_region 95021 95021 0.999 - . logic_name=eponine scaffold_79 . biological_region 95027 95027 0.999 + . logic_name=eponine scaffold_79 . repeat_region 95041 95128 . ? . description=trf scaffold_79 . biological_region 95049 95049 0.999 - . logic_name=eponine scaffold_79 . biological_region 95324 95327 0.999 - . logic_name=eponine scaffold_79 . biological_region 95347 95351 0.999 - . logic_name=eponine scaffold_79 . biological_region 95465 95469 0.999 - . logic_name=eponine scaffold_79 . biological_region 96766 96769 0.999 + . logic_name=eponine scaffold_79 . biological_region 97059 97059 0.999 - . logic_name=eponine scaffold_79 . repeat_region 97487 97529 . ? . description=trf scaffold_79 . biological_region 97577 97583 0.999 - . logic_name=eponine scaffold_79 . repeat_region 98434 98645 . ? . description=trf scaffold_79 ensembl protein_coding_gene 90531 91321 . - . ID=Physo139834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790013;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 90531 91321 . - . ID=Physo139834;Parent=Physo139834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 90531 90553 . - 0 ID=Physo139834;Parent=Physo139834;rank=2 scaffold_79 . exon 90531 90553 . - . ID=Physo139834.2;Parent=Physo139834;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 90661 91321 . - 0 ID=Physo139834;Parent=Physo139834;rank=1 scaffold_79 . exon 90661 91321 . - . ID=Physo139834.1;Parent=Physo139834;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 ensembl protein_coding_gene 93380 94586 . + . ID=Physo139835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790014;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 93380 94586 . + . ID=Physo139835;Parent=Physo139835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 93380 94501 . + 0 ID=Physo139835;Parent=Physo139835;rank=1 scaffold_79 . exon 93380 94586 . + . ID=Physo139835.1;Parent=Physo139835;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_79 ensembl protein_coding_gene 94609 98291 . - . ID=Physo139836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790015;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 94609 98291 . - . ID=Physo139836;Parent=Physo139836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 94609 98291 . - . ID=Physo139836.1;Parent=Physo139836;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_79 . CDS 94797 98270 . - 0 ID=Physo139836;Parent=Physo139836;rank=1 scaffold_79 ensembl protein_coding_gene 99415 100239 . - . ID=Physo139837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790016;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 99415 100239 . - . ID=Physo139837;Parent=Physo139837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 99415 100239 . - 0 ID=Physo139837;Parent=Physo139837;rank=1 scaffold_79 . exon 99415 100239 . - . ID=Physo139837.1;Parent=Physo139837;constitutive=1;rank=1 scaffold_79 . repeat_region 105086 105093 . ? . description=dust scaffold_79 ensembl protein_coding_gene 101661 103193 . - . ID=Physo139838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790017;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 101661 103193 . - . ID=Physo139838;Parent=Physo139838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 101661 101960 . - 0 ID=Physo139838;Parent=Physo139838;rank=5 scaffold_79 . exon 101661 101960 . - . ID=Physo139838.5;Parent=Physo139838;constitutive=1;rank=5 scaffold_79 . CDS 102024 102089 . - 0 ID=Physo139838;Parent=Physo139838;rank=4 scaffold_79 . exon 102024 102089 . - . ID=Physo139838.4;Parent=Physo139838;constitutive=1;rank=4 scaffold_79 . CDS 102167 102202 . - 0 ID=Physo139838;Parent=Physo139838;rank=3 scaffold_79 . exon 102167 102202 . - . ID=Physo139838.3;Parent=Physo139838;constitutive=1;rank=3 scaffold_79 . CDS 102276 102347 . - 0 ID=Physo139838;Parent=Physo139838;rank=2 scaffold_79 . exon 102276 102347 . - . ID=Physo139838.2;Parent=Physo139838;constitutive=1;rank=2 scaffold_79 . CDS 102414 103193 . - 0 ID=Physo139838;Parent=Physo139838;rank=1 scaffold_79 . exon 102414 103193 . - . ID=Physo139838.1;Parent=Physo139838;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 103520 104199 . - . ID=Physo139839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790018;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 103520 104199 . - . ID=Physo139839;Parent=Physo139839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 103520 104161 . - 0 ID=Physo139839;Parent=Physo139839;rank=1 scaffold_79 . exon 103520 104199 . - . ID=Physo139839.1;Parent=Physo139839;constitutive=1;ensembl_phase=-1;rank=1 scaffold_79 ensembl protein_coding_gene 105291 107378 . + . ID=Physo139840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790019;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 105291 107378 . + . ID=Physo139840;Parent=Physo139840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 105291 107378 . + 0 ID=Physo139840;Parent=Physo139840;rank=1 scaffold_79 . exon 105291 107378 . + . ID=Physo139840.1;Parent=Physo139840;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 107499 110081 . - . ID=Physo139841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790020;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 107499 110081 . - . ID=Physo139841;Parent=Physo139841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 107499 110081 . - 0 ID=Physo139841;Parent=Physo139841;rank=1 scaffold_79 . exon 107499 110081 . - . ID=Physo139841.1;Parent=Physo139841;constitutive=1;rank=1 scaffold_79 . biological_region 116029 116029 0.999 - . logic_name=eponine scaffold_79 . biological_region 116755 116760 0.999 + . logic_name=eponine scaffold_79 . biological_region 117111 117119 0.999 + . logic_name=eponine scaffold_79 . repeat_region 117138 117191 . ? . description=trf scaffold_79 . biological_region 117154 117154 0.999 + . logic_name=eponine scaffold_79 . biological_region 117166 117170 0.999 - . logic_name=eponine scaffold_79 . biological_region 117417 117425 0.999 - . logic_name=eponine scaffold_79 . biological_region 117424 117429 0.999 + . logic_name=eponine scaffold_79 . biological_region 117445 117449 0.999 + . logic_name=eponine scaffold_79 . biological_region 117451 117456 0.999 - . logic_name=eponine scaffold_79 . biological_region 117473 117483 0.999 + . logic_name=eponine scaffold_79 . biological_region 117504 117510 0.999 + . logic_name=eponine scaffold_79 . biological_region 117535 117539 0.999 - . logic_name=eponine scaffold_79 . biological_region 117560 117562 0.999 + . logic_name=eponine scaffold_79 . biological_region 117633 117636 0.999 + . logic_name=eponine scaffold_79 . biological_region 117687 117691 0.999 + . logic_name=eponine scaffold_79 . biological_region 117710 117717 0.999 + . logic_name=eponine scaffold_79 . biological_region 117731 117733 0.999 - . logic_name=eponine scaffold_79 . biological_region 118224 118227 0.999 - . logic_name=eponine scaffold_79 . biological_region 118252 118252 0.999 + . logic_name=eponine scaffold_79 . biological_region 119049 119051 0.999 + . logic_name=eponine scaffold_79 . biological_region 119061 119065 0.999 + . logic_name=eponine scaffold_79 . biological_region 119131 119138 0.999 - . logic_name=eponine scaffold_79 . biological_region 119131 119139 0.999 + . logic_name=eponine scaffold_79 . biological_region 119152 119159 0.999 - . logic_name=eponine scaffold_79 . biological_region 119155 119156 0.999 + . logic_name=eponine scaffold_79 . biological_region 119172 119180 0.999 - . logic_name=eponine scaffold_79 . biological_region 119198 119202 0.999 - . logic_name=eponine scaffold_79 ensembl protein_coding_gene 112074 113732 . + . ID=Physo139842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790021;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 112074 113732 . + . ID=Physo139842;Parent=Physo139842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 112074 113732 . + 0 ID=Physo139842;Parent=Physo139842;rank=1 scaffold_79 . exon 112074 113732 . + . ID=Physo139842.1;Parent=Physo139842;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 114028 119106 . - . ID=Physo139843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790022;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 114028 119106 . - . ID=Physo139843;Parent=Physo139843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 114028 117785 . - . ID=Physo139843.3;Parent=Physo139843;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_79 . CDS 114072 117785 . - 0 ID=Physo139843;Parent=Physo139843;rank=2 scaffold_79 . CDS 118135 118770 . - 0 ID=Physo139843;Parent=Physo139843;rank=1 scaffold_79 . exon 118135 118795 . - . ID=Physo139843.2;Parent=Physo139843;constitutive=1;ensembl_phase=-1;rank=2 scaffold_79 . exon 118881 119106 . - . ID=Physo139843.1;Parent=Physo139843;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_79 ensembl protein_coding_gene 119004 123307 . + . ID=Physo139844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790023;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 119004 123307 . + . ID=Physo139844;Parent=Physo139844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 119004 119008 . + 0 ID=Physo139844;Parent=Physo139844;rank=1 scaffold_79 . exon 119004 119008 . + . ID=Physo139844.1;Parent=Physo139844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 119039 119226 . + 0 ID=Physo139844;Parent=Physo139844;rank=2 scaffold_79 . exon 119039 119226 . + . ID=Physo139844.2;Parent=Physo139844;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 119477 119744 . + 0 ID=Physo139844;Parent=Physo139844;rank=3 scaffold_79 . CDS 119818 121372 . + 0 ID=Physo139844;Parent=Physo139844;rank=4 scaffold_79 . CDS 121673 122353 . + 0 ID=Physo139844;Parent=Physo139844;rank=5 scaffold_79 . CDS 122558 123307 . + 0 ID=Physo139844;Parent=Physo139844;rank=6 scaffold_79 . repeat_region 121915 121945 . ? . description=dust scaffold_79 ensembl protein_coding_gene 123489 124340 . + . ID=Physo120571;biotype=protein_coding;external_name=estExt_Genewise1.C_790063;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 123489 124340 . + . ID=Physo120571;Parent=Physo120571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 123489 123881 . + 0 ID=Physo120571;Parent=Physo120571;rank=1 scaffold_79 . exon 123489 123881 . + . ID=Physo120571.1;Parent=Physo120571;constitutive=1;rank=1 scaffold_79 . CDS 123924 124340 . + 0 ID=Physo120571;Parent=Physo120571;rank=2 scaffold_79 . exon 123924 124340 . + . ID=Physo120571.2;Parent=Physo120571;constitutive=1;rank=2 scaffold_79 . exon 119477 119744 . + . ID=Physo139844.3;Parent=Physo139844;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_79 . exon 119818 121372 . + . ID=Physo139844.4;Parent=Physo139844;constitutive=1;ensembl_phase=2;rank=4 scaffold_79 . exon 121673 122353 . + . ID=Physo139844.5;Parent=Physo139844;constitutive=1;rank=5 scaffold_79 . exon 122558 123307 . + . ID=Physo139844.6;Parent=Physo139844;constitutive=1;rank=6 scaffold_79 ensembl protein_coding_gene 124583 125107 . - . ID=Physo139845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790024;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 124583 125107 . - . ID=Physo139845;Parent=Physo139845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 124583 125107 . - 0 ID=Physo139845;Parent=Physo139845;rank=1 scaffold_79 . exon 124583 125107 . - . ID=Physo139845.1;Parent=Physo139845;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 125570 126609 . - . ID=Physo139846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790025;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 125570 126609 . - . ID=Physo139846;Parent=Physo139846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 125570 125614 . - . ID=Physo139846.6;Parent=Physo139846;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=6 scaffold_79 . exon 125693 125801 . - . ID=Physo139846.5;Parent=Physo139846;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_79 . CDS 125776 125801 . - 0 ID=Physo139846;Parent=Physo139846;rank=5 scaffold_79 . CDS 125902 126047 . - 0 ID=Physo139846;Parent=Physo139846;rank=4 scaffold_79 . exon 125902 126047 . - . ID=Physo139846.4;Parent=Physo139846;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_79 . CDS 126136 126211 . - 0 ID=Physo139846;Parent=Physo139846;rank=3 scaffold_79 . exon 126136 126211 . - . ID=Physo139846.3;Parent=Physo139846;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_79 . CDS 126303 126394 . - 0 ID=Physo139846;Parent=Physo139846;rank=2 scaffold_79 . exon 126303 126394 . - . ID=Physo139846.2;Parent=Physo139846;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 126483 126607 . - 0 ID=Physo139846;Parent=Physo139846;rank=1 scaffold_79 . exon 126483 126609 . - . ID=Physo139846.1;Parent=Physo139846;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_79 . biological_region 131578 131579 0.999 - . logic_name=eponine scaffold_79 . biological_region 134424 134426 0.999 - . logic_name=eponine scaffold_79 . biological_region 134519 134521 0.999 + . logic_name=eponine scaffold_79 . biological_region 134534 134538 0.999 - . logic_name=eponine scaffold_79 . repeat_region 134849 134882 . ? . description=trf scaffold_79 . repeat_region 135120 135156 . ? . description=trf scaffold_79 . biological_region 135208 135219 0.999 - . logic_name=eponine scaffold_79 . biological_region 135883 135890 0.999 + . logic_name=eponine scaffold_79 . biological_region 136505 136507 0.999 + . logic_name=eponine scaffold_79 . biological_region 136565 136568 0.999 - . logic_name=eponine scaffold_79 . biological_region 136601 136606 0.999 - . logic_name=eponine scaffold_79 . biological_region 137038 137044 0.999 - . logic_name=eponine scaffold_79 . biological_region 137100 137106 0.999 - . logic_name=eponine scaffold_79 . biological_region 137191 137195 0.999 - . logic_name=eponine scaffold_79 . biological_region 137746 137747 0.999 + . logic_name=eponine scaffold_79 . biological_region 138270 138274 0.999 - . logic_name=eponine scaffold_79 ensembl protein_coding_gene 129365 130092 . + . ID=Physo139847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790026;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 129365 130092 . + . ID=Physo139847;Parent=Physo139847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 129365 129910 . + 0 ID=Physo139847;Parent=Physo139847;rank=1 scaffold_79 . exon 129365 129910 . + . ID=Physo139847.1;Parent=Physo139847;constitutive=1;rank=1 scaffold_79 . CDS 129934 130092 . + 0 ID=Physo139847;Parent=Physo139847;rank=2 scaffold_79 . exon 129934 130092 . + . ID=Physo139847.2;Parent=Physo139847;constitutive=1;rank=2 scaffold_79 ensembl protein_coding_gene 131865 133851 . + . ID=Physo139849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790028;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 131865 133851 . + . ID=Physo139849;Parent=Physo139849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 131865 131928 . + 0 ID=Physo139849;Parent=Physo139849;rank=1 scaffold_79 . exon 131865 131928 . + . ID=Physo139849.1;Parent=Physo139849;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . CDS 132059 133851 . + 0 ID=Physo139849;Parent=Physo139849;rank=2 scaffold_79 . exon 132059 133851 . + . ID=Physo139849.2;Parent=Physo139849;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 ensembl protein_coding_gene 134479 135215 . + . ID=Physo139850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790029;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 134479 135215 . + . ID=Physo139850;Parent=Physo139850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 134479 134514 . + 0 ID=Physo139850;Parent=Physo139850;rank=1 scaffold_79 . exon 134479 134514 . + . ID=Physo139850.1;Parent=Physo139850;constitutive=1;rank=1 scaffold_79 . CDS 134658 135215 . + 0 ID=Physo139850;Parent=Physo139850;rank=2 scaffold_79 . exon 134658 135215 . + . ID=Physo139850.2;Parent=Physo139850;constitutive=1;rank=2 scaffold_79 ensembl protein_coding_gene 136881 138290 . + . ID=Physo139851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790030;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 136881 138290 . + . ID=Physo139851;Parent=Physo139851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 136881 138290 . + 0 ID=Physo139851;Parent=Physo139851;rank=1 scaffold_79 . exon 136881 138290 . + . ID=Physo139851.1;Parent=Physo139851;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 138987 140470 . - . ID=Physo139852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790031;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 138987 140470 . - . ID=Physo139852;Parent=Physo139852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 138987 140470 . - . ID=Physo139852.1;Parent=Physo139852;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_79 . CDS 139184 140470 . - 0 ID=Physo139852;Parent=Physo139852;rank=1 scaffold_79 ensembl protein_coding_gene 130796 131686 . - . ID=Physo158049;biotype=protein_coding;external_name=C_scaffold_79000001;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 130796 131686 . - . ID=Physo158049;Parent=Physo158049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 130796 130903 . - 0 ID=Physo158049;Parent=Physo158049;rank=4 scaffold_79 . exon 130796 130903 . - . ID=Physo158049.4;Parent=Physo158049;constitutive=1;rank=4 scaffold_79 . CDS 130978 131042 . - 0 ID=Physo158049;Parent=Physo158049;rank=3 scaffold_79 . exon 130978 131042 . - . ID=Physo158049.3;Parent=Physo158049;constitutive=1;ensembl_phase=1;rank=3 scaffold_79 . CDS 131114 131267 . - 0 ID=Physo158049;Parent=Physo158049;rank=2 scaffold_79 . exon 131114 131267 . - . ID=Physo158049.2;Parent=Physo158049;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_79 . CDS 131348 131686 . - 0 ID=Physo158049;Parent=Physo158049;rank=1 scaffold_79 . exon 131348 131686 . - . ID=Physo158049.1;Parent=Physo158049;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 142653 150587 . - . ID=Physo139853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790032;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 142653 150587 . - . ID=Physo139853;Parent=Physo139853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 142653 143156 . - . ID=Physo139853.11;Parent=Physo139853;constitutive=1;ensembl_end_phase=-1;rank=11 scaffold_79 . CDS 142926 143156 . - 0 ID=Physo139853;Parent=Physo139853;rank=11 scaffold_79 . CDS 143189 143353 . - 0 ID=Physo139853;Parent=Physo139853;rank=10 scaffold_79 . exon 143189 143353 . - . ID=Physo139853.10;Parent=Physo139853;constitutive=1;rank=10 scaffold_79 . CDS 143397 144194 . - 0 ID=Physo139853;Parent=Physo139853;rank=9 scaffold_79 . exon 143397 144194 . - . ID=Physo139853.9;Parent=Physo139853;constitutive=1;rank=9 scaffold_79 . CDS 144348 145457 . - 0 ID=Physo139853;Parent=Physo139853;rank=8 scaffold_79 . exon 144348 145457 . - . ID=Physo139853.8;Parent=Physo139853;constitutive=1;rank=8 scaffold_79 . CDS 145524 145956 . - 0 ID=Physo139853;Parent=Physo139853;rank=7 scaffold_79 . exon 145524 145956 . - . ID=Physo139853.7;Parent=Physo139853;constitutive=1;ensembl_phase=2;rank=7 scaffold_79 . CDS 146065 146972 . - 0 ID=Physo139853;Parent=Physo139853;rank=6 scaffold_79 . exon 146065 146972 . - . ID=Physo139853.6;Parent=Physo139853;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_79 . CDS 147019 148719 . - 0 ID=Physo139853;Parent=Physo139853;rank=5 scaffold_79 . exon 147019 148719 . - . ID=Physo139853.5;Parent=Physo139853;constitutive=1;rank=5 scaffold_79 . CDS 148830 149180 . - 0 ID=Physo139853;Parent=Physo139853;rank=4 scaffold_79 . exon 148830 149180 . - . ID=Physo139853.4;Parent=Physo139853;constitutive=1;rank=4 scaffold_79 . CDS 149322 149583 . - 0 ID=Physo139853;Parent=Physo139853;rank=3 scaffold_79 . CDS 149633 149778 . - 0 ID=Physo139853;Parent=Physo139853;rank=2 scaffold_79 . CDS 149847 150587 . - 0 ID=Physo139853;Parent=Physo139853;rank=1 scaffold_79 . biological_region 149732 149732 0.999 + . logic_name=eponine scaffold_79 . biological_region 149746 149751 0.999 - . logic_name=eponine scaffold_79 . biological_region 149764 149764 0.999 - . logic_name=eponine scaffold_79 . repeat_region 151662 151670 . ? . description=dust scaffold_79 . repeat_region 156324 156402 . ? . description=trf scaffold_79 . repeat_region 157561 157587 . ? . description=trf scaffold_79 ensembl protein_coding_gene 158175 160134 . - . ID=Physo120578;biotype=protein_coding;external_name=estExt_Genewise1.C_790070;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 158175 160134 . - . ID=Physo120578;Parent=Physo120578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 158175 160134 . - . ID=Physo120578.1;Parent=Physo120578;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_79 . CDS 158176 160065 . - 0 ID=Physo120578;Parent=Physo120578;rank=1 scaffold_79 . exon 149322 149583 . - . ID=Physo139853.3;Parent=Physo139853;constitutive=1;ensembl_phase=2;rank=3 scaffold_79 . exon 149633 149778 . - . ID=Physo139853.2;Parent=Physo139853;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_79 . exon 149847 150587 . - . ID=Physo139853.1;Parent=Physo139853;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 153225 153902 . - . ID=Physo139854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790033;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 153225 153902 . - . ID=Physo139854;Parent=Physo139854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 153225 153902 . - 0 ID=Physo139854;Parent=Physo139854;rank=1 scaffold_79 . exon 153225 153902 . - . ID=Physo139854.1;Parent=Physo139854;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 153931 155445 . - . ID=Physo139855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790034;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 153931 155445 . - . ID=Physo139855;Parent=Physo139855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 153931 154642 . - . ID=Physo139855.2;Parent=Physo139855;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_79 . exon 155112 155445 . - . ID=Physo139855.1;Parent=Physo139855;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_79 . CDS 155154 155258 . - 0 ID=Physo139855;Parent=Physo139855;rank=1 scaffold_79 ensembl protein_coding_gene 162346 164296 . + . ID=Physo139856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790035;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 162346 164296 . + . ID=Physo139856;Parent=Physo139856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 162346 162449 . + 0 ID=Physo139856;Parent=Physo139856;rank=1 scaffold_79 . exon 162346 162449 . + . ID=Physo139856.1;Parent=Physo139856;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 162568 162652 . + 0 ID=Physo139856;Parent=Physo139856;rank=2 scaffold_79 . exon 162568 162652 . + . ID=Physo139856.2;Parent=Physo139856;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 162740 164296 . + 0 ID=Physo139856;Parent=Physo139856;rank=3 scaffold_79 . exon 162740 164296 . + . ID=Physo139856.3;Parent=Physo139856;constitutive=1;rank=3 scaffold_79 ensembl protein_coding_gene 164988 165758 . + . ID=Physo139857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790036;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 164988 165758 . + . ID=Physo139857;Parent=Physo139857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 164988 165758 . + 0 ID=Physo139857;Parent=Physo139857;rank=1 scaffold_79 . exon 164988 165758 . + . ID=Physo139857.1;Parent=Physo139857;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 165981 166959 . - . ID=Physo139858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790037;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 165981 166959 . - . ID=Physo139858;Parent=Physo139858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 165981 166620 . - 0 ID=Physo139858;Parent=Physo139858;rank=2 scaffold_79 . exon 165981 166620 . - . ID=Physo139858.2;Parent=Physo139858;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 166706 166959 . - 0 ID=Physo139858;Parent=Physo139858;rank=1 scaffold_79 . exon 166706 166959 . - . ID=Physo139858.1;Parent=Physo139858;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 ensembl protein_coding_gene 167757 169133 . + . ID=Physo139859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790038;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 167757 169133 . + . ID=Physo139859;Parent=Physo139859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 167757 169133 . + 0 ID=Physo139859;Parent=Physo139859;rank=1 scaffold_79 . exon 167757 169133 . + . ID=Physo139859.1;Parent=Physo139859;constitutive=1;rank=1 scaffold_79 . biological_region 172081 172086 0.999 + . logic_name=eponine scaffold_79 . repeat_region 172518 172528 . ? . description=dust scaffold_79 . biological_region 173042 173046 0.999 - . logic_name=eponine scaffold_79 . biological_region 173620 173625 0.999 - . logic_name=eponine scaffold_79 . biological_region 173677 173682 0.999 + . logic_name=eponine scaffold_79 . biological_region 173686 173689 0.999 - . logic_name=eponine scaffold_79 ensembl protein_coding_gene 170109 172247 . - . ID=Physo139860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790039;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 170109 172247 . - . ID=Physo139860;Parent=Physo139860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 170109 172247 . - 0 ID=Physo139860;Parent=Physo139860;rank=1 scaffold_79 . exon 170109 172247 . - . ID=Physo139860.1;Parent=Physo139860;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 173550 176024 . + . ID=Physo139861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790040;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 173550 176024 . + . ID=Physo139861;Parent=Physo139861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 173550 176024 . + 0 ID=Physo139861;Parent=Physo139861;rank=1 scaffold_79 . exon 173550 176024 . + . ID=Physo139861.1;Parent=Physo139861;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 177277 179804 . + . ID=Physo139862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790041;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 177277 179804 . + . ID=Physo139862;Parent=Physo139862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 177277 179760 . + 0 ID=Physo139862;Parent=Physo139862;rank=1 scaffold_79 . exon 177277 179804 . + . ID=Physo139862.1;Parent=Physo139862;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_79 . repeat_region 184669 187002 . + . description=GypsyPi-1c_I-int scaffold_79 . repeat_region 187272 187555 . + . description=GypsyPi-1c_I-int scaffold_79 ensembl protein_coding_gene 179915 180328 . - . ID=Physo139863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790042;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 179915 180328 . - . ID=Physo139863;Parent=Physo139863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 179915 180328 . - 0 ID=Physo139863;Parent=Physo139863;rank=1 scaffold_79 . exon 179915 180328 . - . ID=Physo139863.1;Parent=Physo139863;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 182247 187314 . + . ID=Physo139864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790043;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 182247 187314 . + . ID=Physo139864;Parent=Physo139864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 182247 182748 . + 0 ID=Physo139864;Parent=Physo139864;rank=1 scaffold_79 . exon 182247 182748 . + . ID=Physo139864.1;Parent=Physo139864;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . CDS 183332 183463 . + 0 ID=Physo139864;Parent=Physo139864;rank=2 scaffold_79 . exon 183332 183463 . + . ID=Physo139864.2;Parent=Physo139864;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 183586 183837 . + 0 ID=Physo139864;Parent=Physo139864;rank=3 scaffold_79 . exon 183586 183837 . + . ID=Physo139864.3;Parent=Physo139864;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_79 . CDS 183944 184216 . + 0 ID=Physo139864;Parent=Physo139864;rank=4 scaffold_79 . exon 183944 184216 . + . ID=Physo139864.4;Parent=Physo139864;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_79 . CDS 184402 186993 . + 0 ID=Physo139864;Parent=Physo139864;rank=5 scaffold_79 . exon 184402 186993 . + . ID=Physo139864.5;Parent=Physo139864;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_79 . CDS 187054 187267 . + 0 ID=Physo139864;Parent=Physo139864;rank=6 scaffold_79 . exon 187054 187267 . + . ID=Physo139864.6;Parent=Physo139864;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_79 . CDS 187308 187314 . + 0 ID=Physo139864;Parent=Physo139864;rank=7 scaffold_79 . exon 187308 187314 . + . ID=Physo139864.7;Parent=Physo139864;constitutive=1;ensembl_phase=2;rank=7 scaffold_79 . repeat_region 190647 190692 . ? . description=trf scaffold_79 . repeat_region 191905 191988 . ? . description=trf scaffold_79 . repeat_region 191905 191991 . ? . description=trf scaffold_79 . repeat_region 191921 191983 . ? . description=dust scaffold_79 . repeat_region 191941 192004 . ? . description=trf scaffold_79 . biological_region 193224 193227 0.999 + . logic_name=eponine scaffold_79 . biological_region 193637 193641 0.999 + . logic_name=eponine scaffold_79 . biological_region 193944 193946 0.999 + . logic_name=eponine scaffold_79 . repeat_region 194449 194457 . ? . description=dust scaffold_79 . repeat_region 198579 198589 . ? . description=dust scaffold_79 ensembl protein_coding_gene 191525 194399 . - . ID=Physo139866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790045;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 191525 194399 . - . ID=Physo139866;Parent=Physo139866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 191525 193067 . - . ID=Physo139866.4;Parent=Physo139866;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_79 . CDS 191731 193067 . - 0 ID=Physo139866;Parent=Physo139866;rank=4 scaffold_79 . CDS 193139 193432 . - 0 ID=Physo139866;Parent=Physo139866;rank=3 scaffold_79 . exon 193139 193432 . - . ID=Physo139866.3;Parent=Physo139866;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_79 . CDS 193514 194056 . - 0 ID=Physo139866;Parent=Physo139866;rank=2 scaffold_79 . exon 193514 194056 . - . ID=Physo139866.2;Parent=Physo139866;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 194135 194399 . - 0 ID=Physo139866;Parent=Physo139866;rank=1 scaffold_79 . exon 194135 194399 . - . ID=Physo139866.1;Parent=Physo139866;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 ensembl protein_coding_gene 195366 196508 . + . ID=Physo139867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790046;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 195366 196508 . + . ID=Physo139867;Parent=Physo139867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 195366 195734 . + 0 ID=Physo139867;Parent=Physo139867;rank=1 scaffold_79 . exon 195366 195734 . + . ID=Physo139867.1;Parent=Physo139867;constitutive=1;rank=1 scaffold_79 . CDS 195777 196508 . + 0 ID=Physo139867;Parent=Physo139867;rank=2 scaffold_79 . exon 195777 196508 . + . ID=Physo139867.2;Parent=Physo139867;constitutive=1;rank=2 scaffold_79 ensembl protein_coding_gene 197671 198240 . + . ID=Physo139868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790047;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 197671 198240 . + . ID=Physo139868;Parent=Physo139868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 197671 198240 . + 0 ID=Physo139868;Parent=Physo139868;rank=1 scaffold_79 . exon 197671 198240 . + . ID=Physo139868.1;Parent=Physo139868;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 190729 191118 . + . ID=Physo158052;biotype=protein_coding;external_name=C_scaffold_79000004;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 190729 191118 . + . ID=Physo158052;Parent=Physo158052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 190729 191118 . + 0 ID=Physo158052;Parent=Physo158052;rank=1 scaffold_79 . exon 190729 191118 . + . ID=Physo158052.1;Parent=Physo158052;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 204709 207561 . + . ID=Physo109239;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_790001;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 204709 207561 . + . ID=Physo109239;Parent=Physo109239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 204709 207561 . + 0 ID=Physo109239;Parent=Physo109239;rank=1 scaffold_79 . exon 204709 207561 . + . ID=Physo109239.1;Parent=Physo109239;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 200166 200735 . - . ID=Physo139869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790048;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 200166 200735 . - . ID=Physo139869;Parent=Physo139869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 200166 200735 . - 0 ID=Physo139869;Parent=Physo139869;rank=1 scaffold_79 . exon 200166 200735 . - . ID=Physo139869.1;Parent=Physo139869;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 201899 203056 . - . ID=Physo139870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790049;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 201899 203056 . - . ID=Physo139870;Parent=Physo139870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 201899 202630 . - 0 ID=Physo139870;Parent=Physo139870;rank=2 scaffold_79 . exon 201899 202630 . - . ID=Physo139870.2;Parent=Physo139870;constitutive=1;rank=2 scaffold_79 . CDS 202673 203056 . - 0 ID=Physo139870;Parent=Physo139870;rank=1 scaffold_79 . exon 202673 203056 . - . ID=Physo139870.1;Parent=Physo139870;constitutive=1;rank=1 scaffold_79 . repeat_region 211269 211421 . ? . description=trf scaffold_79 . biological_region 212929 212935 0.999 - . logic_name=eponine scaffold_79 . repeat_region 212956 212963 . ? . description=dust scaffold_79 ensembl protein_coding_gene 209096 209449 . - . ID=Physo139872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790051;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 209096 209449 . - . ID=Physo139872;Parent=Physo139872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 209096 209449 . - 0 ID=Physo139872;Parent=Physo139872;rank=1 scaffold_79 . exon 209096 209449 . - . ID=Physo139872.1;Parent=Physo139872;constitutive=1;rank=1 scaffold_79 . repeat_region 219622 219765 . + . description=(CAG)n scaffold_79 ensembl protein_coding_gene 223508 231924 . + . ID=Physo139873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790052;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 223508 231924 . + . ID=Physo139873;Parent=Physo139873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 223508 224385 . + 0 ID=Physo139873;Parent=Physo139873;rank=1 scaffold_79 . exon 223508 224385 . + . ID=Physo139873.1;Parent=Physo139873;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 224489 225838 . + 0 ID=Physo139873;Parent=Physo139873;rank=2 scaffold_79 . exon 224489 225838 . + . ID=Physo139873.2;Parent=Physo139873;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_79 . CDS 225915 225937 . + 0 ID=Physo139873;Parent=Physo139873;rank=3 scaffold_79 . exon 225915 225937 . + . ID=Physo139873.3;Parent=Physo139873;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_79 . CDS 226156 228710 . + 0 ID=Physo139873;Parent=Physo139873;rank=4 scaffold_79 . exon 226156 228710 . + . ID=Physo139873.4;Parent=Physo139873;constitutive=1;ensembl_phase=1;rank=4 scaffold_79 . CDS 228779 230074 . + 0 ID=Physo139873;Parent=Physo139873;rank=5 scaffold_79 . exon 228779 230074 . + . ID=Physo139873.5;Parent=Physo139873;constitutive=1;rank=5 scaffold_79 . CDS 230152 230791 . + 0 ID=Physo139873;Parent=Physo139873;rank=6 scaffold_79 . CDS 231014 231578 . + 0 ID=Physo139873;Parent=Physo139873;rank=7 scaffold_79 . CDS 231641 231717 . + 0 ID=Physo139873;Parent=Physo139873;rank=8 scaffold_79 . CDS 231905 231924 . + 0 ID=Physo139873;Parent=Physo139873;rank=9 scaffold_79 . biological_region 231318 231322 0.999 - . logic_name=eponine scaffold_79 . biological_region 232012 232016 0.999 - . logic_name=eponine scaffold_79 . repeat_region 237462 238617 . + . description=GypsyPi-1c_I-int scaffold_79 . exon 230152 230791 . + . ID=Physo139873.6;Parent=Physo139873;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_79 . exon 231014 231578 . + . ID=Physo139873.7;Parent=Physo139873;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_79 . exon 231641 231717 . + . ID=Physo139873.8;Parent=Physo139873;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_79 . exon 231905 231924 . + . ID=Physo139873.9;Parent=Physo139873;constitutive=1;ensembl_phase=1;rank=9 scaffold_79 ensembl protein_coding_gene 235498 236322 . + . ID=Physo139874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790053;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 235498 236322 . + . ID=Physo139874;Parent=Physo139874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 235498 236322 . + 0 ID=Physo139874;Parent=Physo139874;rank=1 scaffold_79 . exon 235498 236322 . + . ID=Physo139874.1;Parent=Physo139874;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 237246 238250 . + . ID=Physo139875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790054;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 237246 238250 . + . ID=Physo139875;Parent=Physo139875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 237246 238250 . + 0 ID=Physo139875;Parent=Physo139875;rank=1 scaffold_79 . exon 237246 238250 . + . ID=Physo139875.1;Parent=Physo139875;constitutive=1;rank=1 scaffold_79 . repeat_region 246779 247101 . ? . description=trf scaffold_79 ensembl protein_coding_gene 243884 245365 . - . ID=Physo139876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790055;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 243884 245365 . - . ID=Physo139876;Parent=Physo139876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 243884 245365 . - 0 ID=Physo139876;Parent=Physo139876;rank=1 scaffold_79 . exon 243884 245365 . - . ID=Physo139876.1;Parent=Physo139876;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 247726 248520 . + . ID=Physo139877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790056;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 247726 248520 . + . ID=Physo139877;Parent=Physo139877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 247726 248520 . + 0 ID=Physo139877;Parent=Physo139877;rank=1 scaffold_79 . exon 247726 248520 . + . ID=Physo139877.1;Parent=Physo139877;constitutive=1;rank=1 scaffold_79 . biological_region 252294 252300 0.999 - . logic_name=eponine scaffold_79 . biological_region 252353 252356 0.999 + . logic_name=eponine scaffold_79 . repeat_region 252953 253002 . ? . description=dust scaffold_79 . biological_region 254537 254543 0.999 - . logic_name=eponine scaffold_79 . biological_region 254596 254599 0.999 + . logic_name=eponine scaffold_79 . repeat_region 254936 258688 . ? . description=dust scaffold_79 . repeat_region 266933 266958 . ? . description=trf scaffold_79 ensembl protein_coding_gene 266165 266973 . - . ID=Physo139878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790057;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 266165 266973 . - . ID=Physo139878;Parent=Physo139878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 266165 266517 . - 0 ID=Physo139878;Parent=Physo139878;rank=2 scaffold_79 . exon 266165 266517 . - . ID=Physo139878.2;Parent=Physo139878;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 266682 266973 . - 0 ID=Physo139878;Parent=Physo139878;rank=1 scaffold_79 . exon 266682 266973 . - . ID=Physo139878.1;Parent=Physo139878;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . repeat_region 272436 272444 . ? . description=dust scaffold_79 . repeat_region 273987 274000 . ? . description=dust scaffold_79 . biological_region 275003 275007 0.999 + . logic_name=eponine scaffold_79 . repeat_region 275576 275584 . ? . description=dust scaffold_79 . biological_region 277993 277994 0.999 - . logic_name=eponine scaffold_79 ensembl protein_coding_gene 269497 270306 . - . ID=Physo139879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790058;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 269497 270306 . - . ID=Physo139879;Parent=Physo139879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 269497 270306 . - 0 ID=Physo139879;Parent=Physo139879;rank=1 scaffold_79 . exon 269497 270306 . - . ID=Physo139879.1;Parent=Physo139879;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 274789 275472 . - . ID=Physo139880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790059;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 274789 275472 . - . ID=Physo139880;Parent=Physo139880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 274789 275472 . - 0 ID=Physo139880;Parent=Physo139880;rank=1 scaffold_79 . exon 274789 275472 . - . ID=Physo139880.1;Parent=Physo139880;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 277493 278371 . + . ID=Physo139881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790060;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 277493 278371 . + . ID=Physo139881;Parent=Physo139881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 277493 278371 . + 0 ID=Physo139881;Parent=Physo139881;rank=1 scaffold_79 . exon 277493 278371 . + . ID=Physo139881.1;Parent=Physo139881;constitutive=1;rank=1 scaffold_79 . repeat_region 282980 283136 . ? . description=trf scaffold_79 ensembl protein_coding_gene 287943 288514 . + . ID=Physo109240;biotype=protein_coding;description=PsAvh463 [Source:UniProtKB/TrEMBL%3BAcc:E0W5F7];external_name=estExt_fgenesh1_pm.C_790002;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 287943 288514 . + . ID=Physo109240;Parent=Physo109240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 287943 287983 . + 0 ID=Physo109240;Parent=Physo109240;rank=1 scaffold_79 . exon 287943 287983 . + . ID=Physo109240.1;Parent=Physo109240;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 288154 288514 . + 0 ID=Physo109240;Parent=Physo109240;rank=2 scaffold_79 . exon 288154 288514 . + . ID=Physo109240.2;Parent=Physo109240;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 ensembl protein_coding_gene 282317 283294 . + . ID=Physo139882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790061;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 282317 283294 . + . ID=Physo139882;Parent=Physo139882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 282317 283294 . + . ID=Physo139882.1;Parent=Physo139882;constitutive=1;ensembl_phase=-1;rank=1 scaffold_79 . CDS 282371 283294 . + 0 ID=Physo139882;Parent=Physo139882;rank=1 scaffold_79 ensembl protein_coding_gene 283782 286903 . + . ID=Physo158054;biotype=protein_coding;external_name=C_scaffold_79000006;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 283782 286903 . + . ID=Physo158054;Parent=Physo158054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 283782 283875 . + 0 ID=Physo158054;Parent=Physo158054;rank=1 scaffold_79 . exon 283782 283875 . + . ID=Physo158054.1;Parent=Physo158054;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . CDS 283896 285060 . + 0 ID=Physo158054;Parent=Physo158054;rank=2 scaffold_79 . exon 283896 285060 . + . ID=Physo158054.2;Parent=Physo158054;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_79 . CDS 285358 285612 . + 0 ID=Physo158054;Parent=Physo158054;rank=3 scaffold_79 . exon 285358 285612 . + . ID=Physo158054.3;Parent=Physo158054;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_79 . CDS 285705 285886 . + 0 ID=Physo158054;Parent=Physo158054;rank=4 scaffold_79 . exon 285705 285886 . + . ID=Physo158054.4;Parent=Physo158054;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_79 . CDS 285958 286035 . + 0 ID=Physo158054;Parent=Physo158054;rank=5 scaffold_79 . exon 285958 286035 . + . ID=Physo158054.5;Parent=Physo158054;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_79 . CDS 286128 286300 . + 0 ID=Physo158054;Parent=Physo158054;rank=6 scaffold_79 . exon 286128 286300 . + . ID=Physo158054.6;Parent=Physo158054;constitutive=1;ensembl_phase=1;rank=6 scaffold_79 . CDS 286373 286467 . + 0 ID=Physo158054;Parent=Physo158054;rank=7 scaffold_79 . exon 286373 286467 . + . ID=Physo158054.7;Parent=Physo158054;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_79 . CDS 286540 286668 . + 0 ID=Physo158054;Parent=Physo158054;rank=8 scaffold_79 . exon 286540 286668 . + . ID=Physo158054.8;Parent=Physo158054;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_79 . CDS 286753 286903 . + 0 ID=Physo158054;Parent=Physo158054;rank=9 scaffold_79 . exon 286753 286903 . + . ID=Physo158054.9;Parent=Physo158054;constitutive=1;ensembl_phase=2;rank=9 scaffold_79 . biological_region 294349 294351 0.999 - . logic_name=eponine scaffold_79 . biological_region 294461 294462 0.999 - . logic_name=eponine scaffold_79 . biological_region 294715 294721 0.999 - . logic_name=eponine scaffold_79 ensembl protein_coding_gene 293108 293479 . + . ID=Physo139885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790064;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 293108 293479 . + . ID=Physo139885;Parent=Physo139885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 293108 293479 . + 0 ID=Physo139885;Parent=Physo139885;rank=1 scaffold_79 . exon 293108 293479 . + . ID=Physo139885.1;Parent=Physo139885;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 297782 299225 . + . ID=Physo139888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790067;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 297782 299225 . + . ID=Physo139888;Parent=Physo139888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 297782 297978 . + 0 ID=Physo139888;Parent=Physo139888;rank=1 scaffold_79 . exon 297782 297978 . + . ID=Physo139888.1;Parent=Physo139888;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 298044 298116 . + 0 ID=Physo139888;Parent=Physo139888;rank=2 scaffold_79 . exon 298044 298116 . + . ID=Physo139888.2;Parent=Physo139888;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 298194 298415 . + 0 ID=Physo139888;Parent=Physo139888;rank=3 scaffold_79 . exon 298194 298415 . + . ID=Physo139888.3;Parent=Physo139888;constitutive=1;rank=3 scaffold_79 . CDS 298491 299225 . + 0 ID=Physo139888;Parent=Physo139888;rank=4 scaffold_79 ensembl protein_coding_gene 293637 297386 . - . ID=Physo158055;biotype=protein_coding;external_name=C_scaffold_79000007;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 293637 297386 . - . ID=Physo158055;Parent=Physo158055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 293637 294161 . - 0 ID=Physo158055;Parent=Physo158055;rank=7 scaffold_79 . exon 293637 294161 . - . ID=Physo158055.7;Parent=Physo158055;constitutive=1;rank=7 scaffold_79 . CDS 294216 294830 . - 0 ID=Physo158055;Parent=Physo158055;rank=6 scaffold_79 . exon 294216 294830 . - . ID=Physo158055.6;Parent=Physo158055;constitutive=1;rank=6 scaffold_79 . CDS 295120 295204 . - 0 ID=Physo158055;Parent=Physo158055;rank=5 scaffold_79 . exon 295120 295204 . - . ID=Physo158055.5;Parent=Physo158055;constitutive=1;ensembl_phase=2;rank=5 scaffold_79 . CDS 295276 295418 . - 0 ID=Physo158055;Parent=Physo158055;rank=4 scaffold_79 . exon 295276 295418 . - . ID=Physo158055.4;Parent=Physo158055;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_79 . CDS 295503 295568 . - 0 ID=Physo158055;Parent=Physo158055;rank=3 scaffold_79 . exon 295503 295568 . - . ID=Physo158055.3;Parent=Physo158055;constitutive=1;rank=3 scaffold_79 . CDS 295630 295669 . - 0 ID=Physo158055;Parent=Physo158055;rank=2 scaffold_79 . exon 295630 295669 . - . ID=Physo158055.2;Parent=Physo158055;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 295735 297386 . - 0 ID=Physo158055;Parent=Physo158055;rank=1 scaffold_79 . exon 295735 297386 . - . ID=Physo158055.1;Parent=Physo158055;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . repeat_region 300061 300069 . ? . description=dust scaffold_79 . repeat_region 302587 302594 . ? . description=dust scaffold_79 . repeat_region 304491 304499 . ? . description=dust scaffold_79 ensembl protein_coding_gene 305160 305796 . + . ID=Physo109241;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_790003;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 305160 305796 . + . ID=Physo109241;Parent=Physo109241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 305160 305796 . + . ID=Physo109241.1;Parent=Physo109241;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_79 . CDS 305207 305737 . + 0 ID=Physo109241;Parent=Physo109241;rank=1 scaffold_79 . exon 298491 299225 . + . ID=Physo139888.4;Parent=Physo139888;constitutive=1;rank=4 scaffold_79 ensembl protein_coding_gene 299446 300739 . - . ID=Physo139889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790068;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 299446 300739 . - . ID=Physo139889;Parent=Physo139889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 299446 299514 . - 0 ID=Physo139889;Parent=Physo139889;rank=8 scaffold_79 . exon 299446 299514 . - . ID=Physo139889.8;Parent=Physo139889;constitutive=1;rank=8 scaffold_79 . CDS 299589 299686 . - 0 ID=Physo139889;Parent=Physo139889;rank=7 scaffold_79 . exon 299589 299686 . - . ID=Physo139889.7;Parent=Physo139889;constitutive=1;ensembl_phase=1;rank=7 scaffold_79 . CDS 299771 299888 . - 0 ID=Physo139889;Parent=Physo139889;rank=6 scaffold_79 . exon 299771 299888 . - . ID=Physo139889.6;Parent=Physo139889;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_79 . CDS 299959 300057 . - 0 ID=Physo139889;Parent=Physo139889;rank=5 scaffold_79 . exon 299959 300057 . - . ID=Physo139889.5;Parent=Physo139889;constitutive=1;rank=5 scaffold_79 . CDS 300129 300204 . - 0 ID=Physo139889;Parent=Physo139889;rank=4 scaffold_79 . exon 300129 300204 . - . ID=Physo139889.4;Parent=Physo139889;constitutive=1;ensembl_phase=2;rank=4 scaffold_79 . CDS 300272 300461 . - 0 ID=Physo139889;Parent=Physo139889;rank=3 scaffold_79 . exon 300272 300461 . - . ID=Physo139889.3;Parent=Physo139889;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_79 . CDS 300528 300603 . - 0 ID=Physo139889;Parent=Physo139889;rank=2 scaffold_79 . exon 300528 300603 . - . ID=Physo139889.2;Parent=Physo139889;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_79 . CDS 300680 300739 . - 0 ID=Physo139889;Parent=Physo139889;rank=1 scaffold_79 . exon 300680 300739 . - . ID=Physo139889.1;Parent=Physo139889;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 301012 301923 . + . ID=Physo139890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790069;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 301012 301923 . + . ID=Physo139890;Parent=Physo139890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 301012 301592 . + 0 ID=Physo139890;Parent=Physo139890;rank=1 scaffold_79 . exon 301012 301592 . + . ID=Physo139890.1;Parent=Physo139890;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 301669 301723 . + 0 ID=Physo139890;Parent=Physo139890;rank=2 scaffold_79 . exon 301669 301723 . + . ID=Physo139890.2;Parent=Physo139890;constitutive=1;ensembl_phase=2;rank=2 scaffold_79 . CDS 301797 301888 . + 0 ID=Physo139890;Parent=Physo139890;rank=3 scaffold_79 . exon 301797 301888 . + . ID=Physo139890.3;Parent=Physo139890;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_79 . CDS 301917 301923 . + 0 ID=Physo139890;Parent=Physo139890;rank=4 scaffold_79 . exon 301917 301923 . + . ID=Physo139890.4;Parent=Physo139890;constitutive=1;ensembl_phase=2;rank=4 scaffold_79 ensembl protein_coding_gene 306070 307527 . - . ID=Physo139892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790071;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 306070 307527 . - . ID=Physo139892;Parent=Physo139892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 306070 307527 . - 0 ID=Physo139892;Parent=Physo139892;rank=1 scaffold_79 . exon 306070 307527 . - . ID=Physo139892.1;Parent=Physo139892;constitutive=1;rank=1 scaffold_79 . repeat_region 308879 308902 . ? . description=trf scaffold_79 . biological_region 310132 310138 0.999 - . logic_name=eponine scaffold_79 . biological_region 310488 310491 0.999 + . logic_name=eponine scaffold_79 . biological_region 310772 310774 0.999 - . logic_name=eponine scaffold_79 . biological_region 315463 315468 0.999 + . logic_name=eponine scaffold_79 . repeat_region 315655 315707 . ? . description=trf scaffold_79 . biological_region 315758 315761 0.999 + . logic_name=eponine scaffold_79 . biological_region 315801 315808 0.999 - . logic_name=eponine scaffold_79 . biological_region 316288 316294 0.999 + . logic_name=eponine scaffold_79 . biological_region 316349 316349 0.999 + . logic_name=eponine scaffold_79 . biological_region 316357 316358 0.999 - . logic_name=eponine scaffold_79 . biological_region 316389 316402 0.999 - . logic_name=eponine scaffold_79 . biological_region 316428 316434 0.999 - . logic_name=eponine scaffold_79 ensembl protein_coding_gene 309939 310912 . + . ID=Physo120525;biotype=protein_coding;external_name=estExt_Genewise1.C_790017;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 309939 310912 . + . ID=Physo120525;Parent=Physo120525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 309939 310912 . + . ID=Physo120525.1;Parent=Physo120525;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_79 . CDS 309940 310911 . + 0 ID=Physo120525;Parent=Physo120525;rank=1 scaffold_79 ensembl protein_coding_gene 308620 309838 . - . ID=Physo139893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790072;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 308620 309838 . - . ID=Physo139893;Parent=Physo139893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 308620 309781 . - . ID=Physo139893.2;Parent=Physo139893;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_79 . CDS 309301 309777 . - 0 ID=Physo139893;Parent=Physo139893;rank=1 scaffold_79 . exon 309823 309838 . - . ID=Physo139893.1;Parent=Physo139893;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_79 ensembl protein_coding_gene 310993 313011 . - . ID=Physo139895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790074;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 310993 313011 . - . ID=Physo139895;Parent=Physo139895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 310993 312845 . - 0 ID=Physo139895;Parent=Physo139895;rank=2 scaffold_79 . exon 310993 312845 . - . ID=Physo139895.2;Parent=Physo139895;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 312909 313011 . - 0 ID=Physo139895;Parent=Physo139895;rank=1 scaffold_79 . exon 312909 313011 . - . ID=Physo139895.1;Parent=Physo139895;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 ensembl protein_coding_gene 314839 315831 . - . ID=Physo139896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790075;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 314839 315831 . - . ID=Physo139896;Parent=Physo139896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 314839 315831 . - 0 ID=Physo139896;Parent=Physo139896;rank=1 scaffold_79 . exon 314839 315831 . - . ID=Physo139896.1;Parent=Physo139896;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 316209 317153 . + . ID=Physo139897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790076;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 316209 317153 . + . ID=Physo139897;Parent=Physo139897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 316209 317153 . + 0 ID=Physo139897;Parent=Physo139897;rank=1 scaffold_79 . exon 316209 317153 . + . ID=Physo139897.1;Parent=Physo139897;constitutive=1;rank=1 scaffold_79 . repeat_region 322114 322122 . ? . description=dust scaffold_79 . repeat_region 326792 326811 . ? . description=dust scaffold_79 ensembl protein_coding_gene 321428 321934 . + . ID=Physo109243;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_790005;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 321428 321934 . + . ID=Physo109243;Parent=Physo109243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 321428 321934 . + 0 ID=Physo109243;Parent=Physo109243;rank=1 scaffold_79 . exon 321428 321934 . + . ID=Physo109243.1;Parent=Physo109243;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 324342 325757 . - . ID=Physo120536;biotype=protein_coding;external_name=estExt_Genewise1.C_790028;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 324342 325757 . - . ID=Physo120536;Parent=Physo120536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 324342 325751 . - 0 ID=Physo120536;Parent=Physo120536;rank=1 scaffold_79 . exon 324342 325757 . - . ID=Physo120536.1;Parent=Physo120536;constitutive=1;ensembl_phase=-1;rank=1 scaffold_79 ensembl protein_coding_gene 328050 330297 . + . ID=Physo120543;biotype=protein_coding;external_name=estExt_Genewise1.C_790035;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 328050 330297 . + . ID=Physo120543;Parent=Physo120543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 328050 328520 . + . ID=Physo120543.1;Parent=Physo120543;constitutive=1;ensembl_phase=-1;rank=1 scaffold_79 . CDS 328092 328520 . + 0 ID=Physo120543;Parent=Physo120543;rank=1 scaffold_79 . CDS 328731 329027 . + 0 ID=Physo120543;Parent=Physo120543;rank=2 scaffold_79 . CDS 329093 329404 . + 0 ID=Physo120543;Parent=Physo120543;rank=3 scaffold_79 . CDS 330080 330137 . + 0 ID=Physo120543;Parent=Physo120543;rank=4 scaffold_79 . CDS 330180 330295 . + 0 ID=Physo120543;Parent=Physo120543;rank=5 scaffold_79 ensembl protein_coding_gene 320092 320852 . - . ID=Physo158056;biotype=protein_coding;external_name=C_scaffold_79000008;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 320092 320852 . - . ID=Physo158056;Parent=Physo158056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 320092 320754 . - 0 ID=Physo158056;Parent=Physo158056;rank=2 scaffold_79 . exon 320092 320754 . - . ID=Physo158056.2;Parent=Physo158056;constitutive=1;rank=2 scaffold_79 . CDS 320799 320852 . - 0 ID=Physo158056;Parent=Physo158056;rank=1 scaffold_79 . exon 320799 320852 . - . ID=Physo158056.1;Parent=Physo158056;constitutive=1;rank=1 scaffold_79 . biological_region 329394 329396 0.999 - . logic_name=eponine scaffold_79 . biological_region 330044 330049 0.999 + . logic_name=eponine scaffold_79 . biological_region 333305 333307 0.999 + . logic_name=eponine scaffold_79 . biological_region 335470 335470 0.999 + . logic_name=eponine scaffold_79 . biological_region 335579 335582 0.999 - . logic_name=eponine scaffold_79 . biological_region 336032 336033 0.999 + . logic_name=eponine scaffold_79 ensembl protein_coding_gene 334943 335985 . - . ID=Physo109244;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_790006;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 334943 335985 . - . ID=Physo109244;Parent=Physo109244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 334943 335280 . - . ID=Physo109244.3;Parent=Physo109244;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_79 . CDS 335101 335280 . - 0 ID=Physo109244;Parent=Physo109244;rank=3 scaffold_79 . CDS 335355 335764 . - 0 ID=Physo109244;Parent=Physo109244;rank=2 scaffold_79 . exon 335355 335764 . - . ID=Physo109244.2;Parent=Physo109244;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 335843 335963 . - 0 ID=Physo109244;Parent=Physo109244;rank=1 scaffold_79 . exon 335843 335985 . - . ID=Physo109244.1;Parent=Physo109244;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_79 . exon 328731 329027 . + . ID=Physo120543.2;Parent=Physo120543;constitutive=1;rank=2 scaffold_79 . exon 329093 329404 . + . ID=Physo120543.3;Parent=Physo120543;constitutive=1;rank=3 scaffold_79 . exon 330080 330137 . + . ID=Physo120543.4;Parent=Physo120543;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_79 . exon 330180 330297 . + . ID=Physo120543.5;Parent=Physo120543;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_79 ensembl protein_coding_gene 330911 333418 . - . ID=Physo139902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790081;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 330911 333418 . - . ID=Physo139902;Parent=Physo139902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 330911 331147 . - . ID=Physo139902.3;Parent=Physo139902;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_79 . CDS 330965 331147 . - 0 ID=Physo139902;Parent=Physo139902;rank=3 scaffold_79 . CDS 331214 332283 . - 0 ID=Physo139902;Parent=Physo139902;rank=2 scaffold_79 . exon 331214 332283 . - . ID=Physo139902.2;Parent=Physo139902;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 332347 333418 . - 0 ID=Physo139902;Parent=Physo139902;rank=1 scaffold_79 . exon 332347 333418 . - . ID=Physo139902.1;Parent=Physo139902;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 ensembl protein_coding_gene 333554 334812 . + . ID=Physo139903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790082;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 333554 334812 . + . ID=Physo139903;Parent=Physo139903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 333554 333895 . + 0 ID=Physo139903;Parent=Physo139903;rank=1 scaffold_79 . exon 333554 333895 . + . ID=Physo139903.1;Parent=Physo139903;constitutive=1;rank=1 scaffold_79 . CDS 333964 334426 . + 0 ID=Physo139903;Parent=Physo139903;rank=2 scaffold_79 . exon 333964 334426 . + . ID=Physo139903.2;Parent=Physo139903;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_79 . CDS 334494 334567 . + 0 ID=Physo139903;Parent=Physo139903;rank=3 scaffold_79 . exon 334494 334567 . + . ID=Physo139903.3;Parent=Physo139903;constitutive=1;ensembl_phase=1;rank=3 scaffold_79 . CDS 334642 334812 . + 0 ID=Physo139903;Parent=Physo139903;rank=4 scaffold_79 . exon 334642 334812 . + . ID=Physo139903.4;Parent=Physo139903;constitutive=1;rank=4 scaffold_79 ensembl protein_coding_gene 336292 337895 . + . ID=Physo139905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790084;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 336292 337895 . + . ID=Physo139905;Parent=Physo139905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 336292 336354 . + 0 ID=Physo139905;Parent=Physo139905;rank=1 scaffold_79 . exon 336292 336354 . + . ID=Physo139905.1;Parent=Physo139905;constitutive=1;rank=1 scaffold_79 . CDS 336422 336516 . + 0 ID=Physo139905;Parent=Physo139905;rank=2 scaffold_79 . exon 336422 336516 . + . ID=Physo139905.2;Parent=Physo139905;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_79 . CDS 336592 336759 . + 0 ID=Physo139905;Parent=Physo139905;rank=3 scaffold_79 . exon 336592 336759 . + . ID=Physo139905.3;Parent=Physo139905;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_79 . CDS 336828 336887 . + 0 ID=Physo139905;Parent=Physo139905;rank=4 scaffold_79 . exon 336828 336887 . + . ID=Physo139905.4;Parent=Physo139905;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_79 . CDS 336956 336960 . + 0 ID=Physo139905;Parent=Physo139905;rank=5 scaffold_79 . exon 336956 336960 . + . ID=Physo139905.5;Parent=Physo139905;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_79 . CDS 336994 337094 . + 0 ID=Physo139905;Parent=Physo139905;rank=6 scaffold_79 . exon 336994 337094 . + . ID=Physo139905.6;Parent=Physo139905;constitutive=1;ensembl_phase=1;rank=6 scaffold_79 . CDS 337171 337230 . + 0 ID=Physo139905;Parent=Physo139905;rank=7 scaffold_79 . exon 337171 337230 . + . ID=Physo139905.7;Parent=Physo139905;constitutive=1;rank=7 scaffold_79 . CDS 337309 337395 . + 0 ID=Physo139905;Parent=Physo139905;rank=8 scaffold_79 . exon 337309 337395 . + . ID=Physo139905.8;Parent=Physo139905;constitutive=1;rank=8 scaffold_79 . CDS 337464 337895 . + 0 ID=Physo139905;Parent=Physo139905;rank=9 scaffold_79 . exon 337464 337895 . + . ID=Physo139905.9;Parent=Physo139905;constitutive=1;rank=9 scaffold_79 ensembl protein_coding_gene 338083 339261 . - . ID=Physo158059;biotype=protein_coding;description=Calcium/calmodulin dependent protein kinase 2 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U6];external_name=C_scaffold_79000011;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 338083 339261 . - . ID=Physo158059;Parent=Physo158059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 338083 338745 . - 0 ID=Physo158059;Parent=Physo158059;rank=2 scaffold_79 . exon 338083 338745 . - . ID=Physo158059.2;Parent=Physo158059;constitutive=1;rank=2 scaffold_79 . CDS 338773 339261 . - 0 ID=Physo158059;Parent=Physo158059;rank=1 scaffold_79 . repeat_region 344384 344433 . ? . description=dust scaffold_79 . repeat_region 348174 348181 . ? . description=dust scaffold_79 ensembl protein_coding_gene 340315 346029 . + . ID=Physo139907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790086;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 340315 346029 . + . ID=Physo139907;Parent=Physo139907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 340315 342122 . + 0 ID=Physo139907;Parent=Physo139907;rank=1 scaffold_79 . exon 340315 342122 . + . ID=Physo139907.1;Parent=Physo139907;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_79 . CDS 342639 344282 . + 0 ID=Physo139907;Parent=Physo139907;rank=2 scaffold_79 . exon 342639 344282 . + . ID=Physo139907.2;Parent=Physo139907;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_79 . CDS 344497 344769 . + 0 ID=Physo139907;Parent=Physo139907;rank=3 scaffold_79 . exon 344497 344769 . + . ID=Physo139907.3;Parent=Physo139907;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_79 . CDS 344809 345282 . + 0 ID=Physo139907;Parent=Physo139907;rank=4 scaffold_79 . exon 344809 345282 . + . ID=Physo139907.4;Parent=Physo139907;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_79 . CDS 345528 346029 . + 0 ID=Physo139907;Parent=Physo139907;rank=5 scaffold_79 . exon 345528 346029 . + . ID=Physo139907.5;Parent=Physo139907;constitutive=1;ensembl_phase=2;rank=5 scaffold_79 ensembl protein_coding_gene 346124 348046 . - . ID=Physo139908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790087;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 346124 348046 . - . ID=Physo139908;Parent=Physo139908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . exon 346124 348015 . - . ID=Physo139908.2;Parent=Physo139908;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_79 . CDS 346171 348015 . - 0 ID=Physo139908;Parent=Physo139908;rank=2 scaffold_79 . CDS 348035 348046 . - 0 ID=Physo139908;Parent=Physo139908;rank=1 scaffold_79 . exon 348035 348046 . - . ID=Physo139908.1;Parent=Physo139908;constitutive=1;rank=1 scaffold_79 . exon 338773 339261 . - . ID=Physo158059.1;Parent=Physo158059;constitutive=1;rank=1 scaffold_79 . repeat_region 348901 348944 . ? . description=trf scaffold_79 . repeat_region 349494 350352 . ? . description=trf scaffold_79 . repeat_region 349504 349649 . ? . description=trf scaffold_79 . repeat_region 349614 349651 . ? . description=trf scaffold_79 . repeat_region 349663 349808 . ? . description=trf scaffold_79 . repeat_region 349773 349810 . ? . description=trf scaffold_79 . repeat_region 349822 349967 . ? . description=trf scaffold_79 . repeat_region 349862 350662 . ? . description=trf scaffold_79 . repeat_region 349932 349969 . ? . description=trf scaffold_79 . repeat_region 349980 350126 . ? . description=trf scaffold_79 . repeat_region 350091 350128 . ? . description=trf scaffold_79 . repeat_region 350201 350529 . ? . description=trf scaffold_79 . biological_region 351940 351940 0.999 - . logic_name=eponine scaffold_79 . biological_region 353473 353480 0.999 + . logic_name=eponine scaffold_79 . repeat_region 354455 354619 . ? . description=trf scaffold_79 . repeat_region 354552 354647 . ? . description=trf scaffold_79 ensembl protein_coding_gene 349584 350722 . + . ID=Physo139909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790088;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 349584 350722 . + . ID=Physo139909;Parent=Physo139909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 349584 350057 . + 0 ID=Physo139909;Parent=Physo139909;rank=1 scaffold_79 . exon 349584 350057 . + . ID=Physo139909.1;Parent=Physo139909;constitutive=1;rank=1 scaffold_79 . CDS 350170 350307 . + 0 ID=Physo139909;Parent=Physo139909;rank=2 scaffold_79 . exon 350170 350307 . + . ID=Physo139909.2;Parent=Physo139909;constitutive=1;rank=2 scaffold_79 . CDS 350331 350396 . + 0 ID=Physo139909;Parent=Physo139909;rank=3 scaffold_79 . exon 350331 350396 . + . ID=Physo139909.3;Parent=Physo139909;constitutive=1;rank=3 scaffold_79 . CDS 350420 350485 . + 0 ID=Physo139909;Parent=Physo139909;rank=4 scaffold_79 . exon 350420 350485 . + . ID=Physo139909.4;Parent=Physo139909;constitutive=1;rank=4 scaffold_79 . CDS 350509 350677 . + 0 ID=Physo139909;Parent=Physo139909;rank=5 scaffold_79 . exon 350509 350677 . + . ID=Physo139909.5;Parent=Physo139909;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_79 . CDS 350718 350722 . + 0 ID=Physo139909;Parent=Physo139909;rank=6 scaffold_79 . exon 350718 350722 . + . ID=Physo139909.6;Parent=Physo139909;constitutive=1;ensembl_phase=1;rank=6 scaffold_79 ensembl protein_coding_gene 355924 357594 . + . ID=Physo139910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790089;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 355924 357594 . + . ID=Physo139910;Parent=Physo139910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 355924 357594 . + 0 ID=Physo139910;Parent=Physo139910;rank=1 scaffold_79 . exon 355924 357594 . + . ID=Physo139910.1;Parent=Physo139910;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 357847 359157 . + . ID=Physo139911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790090;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 357847 359157 . + . ID=Physo139911;Parent=Physo139911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 357847 359157 . + 0 ID=Physo139911;Parent=Physo139911;rank=1 scaffold_79 . exon 357847 359157 . + . ID=Physo139911.1;Parent=Physo139911;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 363573 367451 . - . ID=Physo109245;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_790007;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 363573 367451 . - . ID=Physo109245;Parent=Physo109245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 363573 367451 . - 0 ID=Physo109245;Parent=Physo109245;rank=1 scaffold_79 . exon 363573 367451 . - . ID=Physo109245.1;Parent=Physo109245;constitutive=1;rank=1 scaffold_79 ensembl protein_coding_gene 359318 363309 . - . ID=Physo158062;biotype=protein_coding;external_name=C_scaffold_79000014;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 359318 363309 . - . ID=Physo158062;Parent=Physo158062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 359318 359676 . - 0 ID=Physo158062;Parent=Physo158062;rank=7 scaffold_79 . exon 359318 359676 . - . ID=Physo158062.7;Parent=Physo158062;constitutive=1;ensembl_phase=1;rank=7 scaffold_79 . CDS 359704 361644 . - 0 ID=Physo158062;Parent=Physo158062;rank=6 scaffold_79 . exon 359704 361644 . - . ID=Physo158062.6;Parent=Physo158062;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_79 . CDS 362239 362390 . - 0 ID=Physo158062;Parent=Physo158062;rank=5 scaffold_79 . exon 362239 362390 . - . ID=Physo158062.5;Parent=Physo158062;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_79 . CDS 362462 362639 . - 0 ID=Physo158062;Parent=Physo158062;rank=4 scaffold_79 . exon 362462 362639 . - . ID=Physo158062.4;Parent=Physo158062;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_79 . CDS 362709 362967 . - 0 ID=Physo158062;Parent=Physo158062;rank=3 scaffold_79 . exon 362709 362967 . - . ID=Physo158062.3;Parent=Physo158062;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_79 . CDS 363056 363202 . - 0 ID=Physo158062;Parent=Physo158062;rank=2 scaffold_79 . exon 363056 363202 . - . ID=Physo158062.2;Parent=Physo158062;constitutive=1;rank=2 scaffold_79 . CDS 363289 363309 . - 0 ID=Physo158062;Parent=Physo158062;rank=1 scaffold_79 . exon 363289 363309 . - . ID=Physo158062.1;Parent=Physo158062;constitutive=1;rank=1 scaffold_79 . repeat_region 369041 369048 . ? . description=dust scaffold_79 . repeat_region 370127 370135 . ? . description=dust scaffold_79 . biological_region 371539 371541 0.999 + . logic_name=eponine scaffold_79 . biological_region 371638 371641 0.999 - . logic_name=eponine scaffold_79 . repeat_region 372602 372613 . ? . description=dust scaffold_79 . repeat_region 373471 373631 . - . description=Polinton-1_PI scaffold_79 . repeat_region 373647 373717 . - . description=Polinton-1_PI scaffold_79 . repeat_region 373767 374050 . + . description=Polinton-1_PI scaffold_79 . biological_region 373970 373973 0.999 + . logic_name=eponine scaffold_79 . repeat_region 374825 377970 . + . description=Polinton-1_PI scaffold_79 . repeat_region 377975 378035 . + . description=Polinton-1_PI scaffold_79 ensembl protein_coding_gene 371083 372604 . - . ID=Physo109246;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_790008;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 371083 372604 . - . ID=Physo109246;Parent=Physo109246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 371083 372588 . - 0 ID=Physo109246;Parent=Physo109246;rank=1 scaffold_79 . exon 371083 372604 . - . ID=Physo109246.1;Parent=Physo109246;constitutive=1;ensembl_phase=-1;rank=1 scaffold_79 ensembl protein_coding_gene 369763 370797 . + . ID=Physo139914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790093;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 369763 370797 . + . ID=Physo139914;Parent=Physo139914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 369763 370096 . + 0 ID=Physo139914;Parent=Physo139914;rank=1 scaffold_79 . exon 369763 370096 . + . ID=Physo139914.1;Parent=Physo139914;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . CDS 370128 370342 . + 0 ID=Physo139914;Parent=Physo139914;rank=2 scaffold_79 . exon 370128 370342 . + . ID=Physo139914.2;Parent=Physo139914;constitutive=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 370366 370797 . + 0 ID=Physo139914;Parent=Physo139914;rank=3 scaffold_79 . exon 370366 370797 . + . ID=Physo139914.3;Parent=Physo139914;constitutive=1;rank=3 scaffold_79 ensembl protein_coding_gene 375525 377508 . + . ID=Physo139916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_790095;logic_name=jgi_physo1_1 scaffold_79 ensembl transcript 375525 377508 . + . ID=Physo139916;Parent=Physo139916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_79 . CDS 375525 377124 . + 0 ID=Physo139916;Parent=Physo139916;rank=1 scaffold_79 . exon 375525 377124 . + . ID=Physo139916.1;Parent=Physo139916;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_79 . CDS 377364 377435 . + 0 ID=Physo139916;Parent=Physo139916;rank=2 scaffold_79 . exon 377364 377435 . + . ID=Physo139916.2;Parent=Physo139916;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_79 . CDS 377498 377508 . + 0 ID=Physo139916;Parent=Physo139916;rank=3 scaffold_79 . exon 377498 377508 . + . ID=Physo139916.3;Parent=Physo139916;constitutive=1;ensembl_phase=1;rank=3 ##gff-version 3 ##sequence-region scaffold_78 1 380068 scaffold_78 . repeat_region 1041 1746 . - . description=GypsyPi-1c_I-int scaffold_78 . repeat_region 1748 4188 . ? . description=dust scaffold_78 . repeat_region 4189 5192 . - . description=GypsyPi-1c_I-int scaffold_78 . repeat_region 5206 11077 . ? . description=dust scaffold_78 ensembl protein_coding_gene 128 1136 . + . ID=Physo139740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780001;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 128 1136 . + . ID=Physo139740;Parent=Physo139740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 128 564 . + 0 ID=Physo139740;Parent=Physo139740;rank=1 scaffold_78 . exon 128 564 . + . ID=Physo139740.1;Parent=Physo139740;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 . CDS 650 800 . + 0 ID=Physo139740;Parent=Physo139740;rank=2 scaffold_78 . exon 650 800 . + . ID=Physo139740.2;Parent=Physo139740;constitutive=1;ensembl_phase=2;rank=2 scaffold_78 . CDS 828 1136 . + 0 ID=Physo139740;Parent=Physo139740;rank=3 scaffold_78 . exon 828 1136 . + . ID=Physo139740.3;Parent=Physo139740;constitutive=1;rank=3 scaffold_78 . biological_region 18553 18557 0.999 - . logic_name=eponine scaffold_78 . biological_region 18946 18949 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 19174 21175 . - . ID=Physo139741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780002;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 19174 21175 . - . ID=Physo139741;Parent=Physo139741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 19174 19721 . - 0 ID=Physo139741;Parent=Physo139741;rank=2 scaffold_78 . exon 19174 19721 . - . ID=Physo139741.2;Parent=Physo139741;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 20014 21151 . - 0 ID=Physo139741;Parent=Physo139741;rank=1 scaffold_78 . repeat_region 26486 26495 . ? . description=dust scaffold_78 . repeat_region 26783 26790 . ? . description=dust scaffold_78 . repeat_region 27240 29120 . ? . description=dust scaffold_78 . exon 20014 21175 . - . ID=Physo139741.1;Parent=Physo139741;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_78 . biological_region 29573 29577 0.999 + . logic_name=eponine scaffold_78 . biological_region 34455 34460 0.999 + . logic_name=eponine scaffold_78 . repeat_region 41318 41335 . ? . description=dust scaffold_78 . repeat_region 41730 41738 . ? . description=dust scaffold_78 . repeat_region 41771 41778 . ? . description=dust scaffold_78 . repeat_region 43054 43062 . ? . description=dust scaffold_78 . repeat_region 43538 43546 . ? . description=dust scaffold_78 . repeat_region 45374 45382 . ? . description=dust scaffold_78 . repeat_region 46624 46649 . ? . description=trf scaffold_78 . repeat_region 47412 47441 . ? . description=trf scaffold_78 ensembl protein_coding_gene 46832 49804 . + . ID=Physo139742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780003;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 46832 49804 . + . ID=Physo139742;Parent=Physo139742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 46832 49804 . + 0 ID=Physo139742;Parent=Physo139742;rank=1 scaffold_78 . exon 46832 49804 . + . ID=Physo139742.1;Parent=Physo139742;constitutive=1;rank=1 scaffold_78 . biological_region 52101 52105 0.999 - . logic_name=eponine scaffold_78 . biological_region 52327 52330 0.999 - . logic_name=eponine scaffold_78 . biological_region 52377 52378 0.999 - . logic_name=eponine scaffold_78 . biological_region 54520 54523 0.999 + . logic_name=eponine scaffold_78 . biological_region 54909 54910 0.999 - . logic_name=eponine scaffold_78 . biological_region 55867 55875 0.999 + . logic_name=eponine scaffold_78 . biological_region 57763 57770 0.999 - . logic_name=eponine scaffold_78 . biological_region 57830 57833 0.999 - . logic_name=eponine scaffold_78 . biological_region 57856 57858 0.999 + . logic_name=eponine scaffold_78 . biological_region 57922 57927 0.999 + . logic_name=eponine scaffold_78 . biological_region 57943 57944 0.999 + . logic_name=eponine scaffold_78 . biological_region 57944 57951 0.999 - . logic_name=eponine scaffold_78 . biological_region 57969 57975 0.999 - . logic_name=eponine scaffold_78 . biological_region 58184 58186 0.999 + . logic_name=eponine scaffold_78 . biological_region 58405 58406 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 50913 52967 . + . ID=Physo139743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780004;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 50913 52967 . + . ID=Physo139743;Parent=Physo139743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 50913 52967 . + 0 ID=Physo139743;Parent=Physo139743;rank=1 scaffold_78 . exon 50913 52967 . + . ID=Physo139743.1;Parent=Physo139743;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 54633 56072 . + . ID=Physo139744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780005;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 54633 56072 . + . ID=Physo139744;Parent=Physo139744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 54633 56072 . + 0 ID=Physo139744;Parent=Physo139744;rank=1 scaffold_78 . exon 54633 56072 . + . ID=Physo139744.1;Parent=Physo139744;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 56898 57293 . + . ID=Physo139745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780006;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 56898 57293 . + . ID=Physo139745;Parent=Physo139745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 56898 57284 . + 0 ID=Physo139745;Parent=Physo139745;rank=1 scaffold_78 . exon 56898 57293 . + . ID=Physo139745.1;Parent=Physo139745;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_78 . repeat_region 62864 62895 . ? . description=dust scaffold_78 . repeat_region 62868 62890 . ? . description=trf scaffold_78 . repeat_region 67743 67753 . ? . description=dust scaffold_78 ensembl protein_coding_gene 62853 64128 . + . ID=Physo109232;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_780001;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 62853 64128 . + . ID=Physo109232;Parent=Physo109232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 62853 62974 . + . ID=Physo109232.1;Parent=Physo109232;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_78 . CDS 62908 62974 . + 0 ID=Physo109232;Parent=Physo109232;rank=1 scaffold_78 . CDS 63069 64012 . + 0 ID=Physo109232;Parent=Physo109232;rank=2 scaffold_78 . exon 63069 64128 . + . ID=Physo109232.2;Parent=Physo109232;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_78 ensembl protein_coding_gene 58919 62011 . + . ID=Physo139746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780007;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 58919 62011 . + . ID=Physo139746;Parent=Physo139746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 58919 62011 . + 0 ID=Physo139746;Parent=Physo139746;rank=1 scaffold_78 . exon 58919 62011 . + . ID=Physo139746.1;Parent=Physo139746;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 64307 64708 . + . ID=Physo139748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780009;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 64307 64708 . + . ID=Physo139748;Parent=Physo139748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 64307 64708 . + 0 ID=Physo139748;Parent=Physo139748;rank=1 scaffold_78 . exon 64307 64708 . + . ID=Physo139748.1;Parent=Physo139748;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 65213 67642 . - . ID=Physo139749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780010;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 65213 67642 . - . ID=Physo139749;Parent=Physo139749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 65213 67642 . - 0 ID=Physo139749;Parent=Physo139749;rank=1 scaffold_78 . exon 65213 67642 . - . ID=Physo139749.1;Parent=Physo139749;constitutive=1;rank=1 scaffold_78 . biological_region 68894 68896 0.999 - . logic_name=eponine scaffold_78 . biological_region 69860 69863 0.999 + . logic_name=eponine scaffold_78 . biological_region 69961 69967 0.999 + . logic_name=eponine scaffold_78 . biological_region 74439 74441 0.999 - . logic_name=eponine scaffold_78 . biological_region 75112 75117 0.999 + . logic_name=eponine scaffold_78 . biological_region 75196 75197 0.999 - . logic_name=eponine scaffold_78 . biological_region 75222 75224 0.999 - . logic_name=eponine scaffold_78 . biological_region 75274 75283 0.999 - . logic_name=eponine scaffold_78 . biological_region 75344 75346 0.999 - . logic_name=eponine scaffold_78 . biological_region 75350 75354 0.999 - . logic_name=eponine scaffold_78 . biological_region 75407 75408 0.999 + . logic_name=eponine scaffold_78 . biological_region 76592 76595 0.999 - . logic_name=eponine scaffold_78 . biological_region 76624 76625 0.999 - . logic_name=eponine scaffold_78 . biological_region 76645 76652 0.999 + . logic_name=eponine scaffold_78 . biological_region 76711 76713 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 68242 70608 . - . ID=Physo139750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780011;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 68242 70608 . - . ID=Physo139750;Parent=Physo139750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 68242 70608 . - 0 ID=Physo139750;Parent=Physo139750;rank=1 scaffold_78 . exon 68242 70608 . - . ID=Physo139750.1;Parent=Physo139750;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 73613 81229 . + . ID=Physo139751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780012;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 73613 81229 . + . ID=Physo139751;Parent=Physo139751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 73613 74241 . + 0 ID=Physo139751;Parent=Physo139751;rank=1 scaffold_78 . exon 73613 74241 . + . ID=Physo139751.1;Parent=Physo139751;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 . CDS 74442 74685 . + 0 ID=Physo139751;Parent=Physo139751;rank=2 scaffold_78 . exon 74442 74685 . + . ID=Physo139751.2;Parent=Physo139751;constitutive=1;ensembl_phase=2;rank=2 scaffold_78 . CDS 74739 75628 . + 0 ID=Physo139751;Parent=Physo139751;rank=3 scaffold_78 . exon 74739 75628 . + . ID=Physo139751.3;Parent=Physo139751;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_78 . CDS 75656 75808 . + 0 ID=Physo139751;Parent=Physo139751;rank=4 scaffold_78 . exon 75656 75808 . + . ID=Physo139751.4;Parent=Physo139751;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_78 . CDS 75835 77506 . + 0 ID=Physo139751;Parent=Physo139751;rank=5 scaffold_78 . exon 75835 77506 . + . ID=Physo139751.5;Parent=Physo139751;constitutive=1;ensembl_phase=2;rank=5 scaffold_78 . CDS 77638 79278 . + 0 ID=Physo139751;Parent=Physo139751;rank=6 scaffold_78 . exon 77638 79278 . + . ID=Physo139751.6;Parent=Physo139751;constitutive=1;rank=6 scaffold_78 . CDS 79306 80115 . + 0 ID=Physo139751;Parent=Physo139751;rank=7 scaffold_78 . CDS 80390 81229 . + 0 ID=Physo139751;Parent=Physo139751;rank=8 scaffold_78 . exon 79306 80115 . + . ID=Physo139751.7;Parent=Physo139751;constitutive=1;rank=7 scaffold_78 . exon 80390 81229 . + . ID=Physo139751.8;Parent=Physo139751;constitutive=1;rank=8 scaffold_78 ensembl protein_coding_gene 82572 86306 . - . ID=Physo139752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780013;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 82572 86306 . - . ID=Physo139752;Parent=Physo139752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 82572 83971 . - 0 ID=Physo139752;Parent=Physo139752;rank=4 scaffold_78 . exon 82572 83971 . - . ID=Physo139752.4;Parent=Physo139752;constitutive=1;ensembl_phase=1;rank=4 scaffold_78 . CDS 84145 84871 . - 0 ID=Physo139752;Parent=Physo139752;rank=3 scaffold_78 . exon 84145 84871 . - . ID=Physo139752.3;Parent=Physo139752;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_78 . CDS 84935 85810 . - 0 ID=Physo139752;Parent=Physo139752;rank=2 scaffold_78 . exon 84935 85810 . - . ID=Physo139752.2;Parent=Physo139752;constitutive=1;rank=2 scaffold_78 . CDS 86271 86306 . - 0 ID=Physo139752;Parent=Physo139752;rank=1 scaffold_78 . exon 86271 86306 . - . ID=Physo139752.1;Parent=Physo139752;constitutive=1;rank=1 scaffold_78 . biological_region 88851 88855 0.999 - . logic_name=eponine scaffold_78 . repeat_region 89514 89544 . ? . description=trf scaffold_78 . repeat_region 89553 89560 . ? . description=dust scaffold_78 . repeat_region 89588 89595 . ? . description=dust scaffold_78 . biological_region 89859 89862 0.999 - . logic_name=eponine scaffold_78 . biological_region 89868 89868 0.999 - . logic_name=eponine scaffold_78 . repeat_region 89956 89980 . ? . description=trf scaffold_78 . biological_region 90026 90032 0.999 - . logic_name=eponine scaffold_78 . biological_region 93865 93866 0.999 + . logic_name=eponine scaffold_78 . biological_region 94053 94056 0.999 + . logic_name=eponine scaffold_78 . biological_region 94249 94250 0.999 + . logic_name=eponine scaffold_78 . biological_region 94332 94332 0.999 + . logic_name=eponine scaffold_78 . biological_region 94423 94428 0.999 - . logic_name=eponine scaffold_78 . biological_region 94479 94482 0.999 + . logic_name=eponine scaffold_78 . repeat_region 94566 94613 . ? . description=trf scaffold_78 ensembl protein_coding_gene 89777 91262 . + . ID=Physo139753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780014;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 89777 91262 . + . ID=Physo139753;Parent=Physo139753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 89777 91243 . + 0 ID=Physo139753;Parent=Physo139753;rank=1 scaffold_78 . exon 89777 91262 . + . ID=Physo139753.1;Parent=Physo139753;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_78 ensembl protein_coding_gene 93808 96111 . - . ID=Physo139754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780015;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 93808 96111 . - . ID=Physo139754;Parent=Physo139754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 93808 96111 . - 0 ID=Physo139754;Parent=Physo139754;rank=1 scaffold_78 . exon 93808 96111 . - . ID=Physo139754.1;Parent=Physo139754;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 98522 100852 . - . ID=Physo139755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780016;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 98522 100852 . - . ID=Physo139755;Parent=Physo139755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 98522 100852 . - 0 ID=Physo139755;Parent=Physo139755;rank=1 scaffold_78 . exon 98522 100852 . - . ID=Physo139755.1;Parent=Physo139755;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 101709 106390 . - . ID=Physo139756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780017;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 101709 106390 . - . ID=Physo139756;Parent=Physo139756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 101709 103795 . - 0 ID=Physo139756;Parent=Physo139756;rank=4 scaffold_78 . exon 101709 103795 . - . ID=Physo139756.4;Parent=Physo139756;constitutive=1;ensembl_phase=1;rank=4 scaffold_78 . CDS 104192 105325 . - 0 ID=Physo139756;Parent=Physo139756;rank=3 scaffold_78 . exon 104192 105325 . - . ID=Physo139756.3;Parent=Physo139756;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_78 . CDS 105371 105461 . - 0 ID=Physo139756;Parent=Physo139756;rank=2 scaffold_78 . exon 105371 105461 . - . ID=Physo139756.2;Parent=Physo139756;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_78 . CDS 105584 106390 . - 0 ID=Physo139756;Parent=Physo139756;rank=1 scaffold_78 . exon 105584 106390 . - . ID=Physo139756.1;Parent=Physo139756;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 107079 109418 . - . ID=Physo139757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780018;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 107079 109418 . - . ID=Physo139757;Parent=Physo139757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 107079 109418 . - 0 ID=Physo139757;Parent=Physo139757;rank=1 scaffold_78 . exon 107079 109418 . - . ID=Physo139757.1;Parent=Physo139757;constitutive=1;rank=1 scaffold_78 . biological_region 108377 108383 0.999 + . logic_name=eponine scaffold_78 . biological_region 108759 108764 0.999 + . logic_name=eponine scaffold_78 . biological_region 108865 108870 0.999 - . logic_name=eponine scaffold_78 . biological_region 112003 112007 0.999 - . logic_name=eponine scaffold_78 . biological_region 113152 113152 0.999 + . logic_name=eponine scaffold_78 . biological_region 113270 113278 0.999 + . logic_name=eponine scaffold_78 . biological_region 113282 113286 0.999 - . logic_name=eponine scaffold_78 . biological_region 113294 113302 0.999 + . logic_name=eponine scaffold_78 . biological_region 113330 113335 0.999 - . logic_name=eponine scaffold_78 . biological_region 113337 113339 0.999 + . logic_name=eponine scaffold_78 . biological_region 113431 113435 0.999 + . logic_name=eponine scaffold_78 . biological_region 113433 113435 0.999 - . logic_name=eponine scaffold_78 . biological_region 113541 113543 0.999 - . logic_name=eponine scaffold_78 . biological_region 113648 113648 0.999 - . logic_name=eponine scaffold_78 . repeat_region 113897 113983 . ? . description=trf scaffold_78 . repeat_region 114032 114160 . ? . description=trf scaffold_78 . repeat_region 114032 114161 . ? . description=trf scaffold_78 . repeat_region 114047 114110 . ? . description=dust scaffold_78 . biological_region 114630 114635 0.999 - . logic_name=eponine scaffold_78 . biological_region 114650 114654 0.999 + . logic_name=eponine scaffold_78 . biological_region 114687 114693 0.999 + . logic_name=eponine scaffold_78 . biological_region 114705 114709 0.999 + . logic_name=eponine scaffold_78 . biological_region 114748 114750 0.999 - . logic_name=eponine scaffold_78 . repeat_region 115585 115628 . ? . description=trf scaffold_78 ensembl protein_coding_gene 109946 111277 . - . ID=Physo139758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780019;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 109946 111277 . - . ID=Physo139758;Parent=Physo139758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 109946 111277 . - 0 ID=Physo139758;Parent=Physo139758;rank=1 scaffold_78 . exon 109946 111277 . - . ID=Physo139758.1;Parent=Physo139758;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 113283 114285 . + . ID=Physo139759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780020;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 113283 114285 . + . ID=Physo139759;Parent=Physo139759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 113283 114285 . + . ID=Physo139759.1;Parent=Physo139759;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_78 . CDS 113492 114193 . + 0 ID=Physo139759;Parent=Physo139759;rank=1 scaffold_78 ensembl protein_coding_gene 114563 116610 . + . ID=Physo139760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780021;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 114563 116610 . + . ID=Physo139760;Parent=Physo139760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 114563 116610 . + . ID=Physo139760.1;Parent=Physo139760;constitutive=1;ensembl_phase=-1;rank=1 scaffold_78 . CDS 114580 116610 . + 0 ID=Physo139760;Parent=Physo139760;rank=1 scaffold_78 ensembl protein_coding_gene 116885 118018 . - . ID=Physo139761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780022;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 116885 118018 . - . ID=Physo139761;Parent=Physo139761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 116885 118018 . - 0 ID=Physo139761;Parent=Physo139761;rank=1 scaffold_78 . exon 116885 118018 . - . ID=Physo139761.1;Parent=Physo139761;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 125949 127109 . + . ID=Physo109233;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_780002;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 125949 127109 . + . ID=Physo109233;Parent=Physo109233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 125949 126893 . + 0 ID=Physo109233;Parent=Physo109233;rank=1 scaffold_78 . exon 125949 127109 . + . ID=Physo109233.1;Parent=Physo109233;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_78 ensembl protein_coding_gene 119144 120952 . + . ID=Physo139762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780023;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 119144 120952 . + . ID=Physo139762;Parent=Physo139762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 119144 119203 . + 0 ID=Physo139762;Parent=Physo139762;rank=1 scaffold_78 . exon 119144 119203 . + . ID=Physo139762.1;Parent=Physo139762;constitutive=1;rank=1 scaffold_78 . CDS 119315 119475 . + 0 ID=Physo139762;Parent=Physo139762;rank=2 scaffold_78 . exon 119315 119475 . + . ID=Physo139762.2;Parent=Physo139762;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_78 . CDS 119547 120855 . + 0 ID=Physo139762;Parent=Physo139762;rank=3 scaffold_78 . exon 119547 120855 . + . ID=Physo139762.3;Parent=Physo139762;constitutive=1;ensembl_phase=2;rank=3 scaffold_78 . CDS 120938 120952 . + 0 ID=Physo139762;Parent=Physo139762;rank=4 scaffold_78 . exon 120938 120952 . + . ID=Physo139762.4;Parent=Physo139762;constitutive=1;rank=4 scaffold_78 ensembl protein_coding_gene 121397 123682 . - . ID=Physo139763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780024;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 121397 123682 . - . ID=Physo139763;Parent=Physo139763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 121397 123682 . - 0 ID=Physo139763;Parent=Physo139763;rank=1 scaffold_78 . exon 121397 123682 . - . ID=Physo139763.1;Parent=Physo139763;constitutive=1;rank=1 scaffold_78 . repeat_region 130454 130495 . ? . description=trf scaffold_78 . biological_region 132238 132242 0.999 - . logic_name=eponine scaffold_78 . biological_region 132620 132620 0.999 + . logic_name=eponine scaffold_78 . biological_region 132628 132628 0.999 - . logic_name=eponine scaffold_78 . biological_region 132638 132645 0.999 + . logic_name=eponine scaffold_78 . biological_region 132688 132697 0.999 - . logic_name=eponine scaffold_78 . biological_region 132709 132716 0.999 + . logic_name=eponine scaffold_78 . biological_region 132737 132741 0.999 - . logic_name=eponine scaffold_78 . biological_region 136268 136270 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 131672 132832 . - . ID=Physo109234;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_780003;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 131672 132832 . - . ID=Physo109234;Parent=Physo109234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 131672 132832 . - . ID=Physo109234.1;Parent=Physo109234;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_78 . CDS 131888 132832 . - 0 ID=Physo109234;Parent=Physo109234;rank=1 scaffold_78 ensembl protein_coding_gene 127489 129725 . - . ID=Physo139765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780026;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 127489 129725 . - . ID=Physo139765;Parent=Physo139765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 127489 129492 . - . ID=Physo139765.2;Parent=Physo139765;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_78 . CDS 127591 129411 . - 0 ID=Physo139765;Parent=Physo139765;rank=1 scaffold_78 . exon 129614 129725 . - . ID=Physo139765.1;Parent=Physo139765;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_78 ensembl protein_coding_gene 134293 137498 . - . ID=Physo139767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780028;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 134293 137498 . - . ID=Physo139767;Parent=Physo139767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 134293 135259 . - 0 ID=Physo139767;Parent=Physo139767;rank=2 scaffold_78 . exon 134293 135259 . - . ID=Physo139767.2;Parent=Physo139767;constitutive=1;ensembl_phase=2;rank=2 scaffold_78 . CDS 135331 137498 . - 0 ID=Physo139767;Parent=Physo139767;rank=1 scaffold_78 . exon 135331 137498 . - . ID=Physo139767.1;Parent=Physo139767;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 . repeat_region 137008 137039 . ? . description=dust scaffold_78 . repeat_region 138811 138854 . ? . description=dust scaffold_78 . repeat_region 138914 138962 . ? . description=dust scaffold_78 ensembl protein_coding_gene 139257 139776 . - . ID=Physo120460;biotype=protein_coding;external_name=estExt_Genewise1.C_780032;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 139257 139776 . - . ID=Physo120460;Parent=Physo120460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 139257 139557 . - . ID=Physo120460.2;Parent=Physo120460;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_78 . CDS 139429 139557 . - 0 ID=Physo120460;Parent=Physo120460;rank=2 scaffold_78 . CDS 139632 139727 . - 0 ID=Physo120460;Parent=Physo120460;rank=1 scaffold_78 . exon 139632 139776 . - . ID=Physo120460.1;Parent=Physo120460;constitutive=1;ensembl_phase=-1;rank=1 scaffold_78 ensembl protein_coding_gene 140286 142619 . - . ID=Physo120467;biotype=protein_coding;external_name=estExt_Genewise1.C_780039;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 140286 142619 . - . ID=Physo120467;Parent=Physo120467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 140286 140519 . - 0 ID=Physo120467;Parent=Physo120467;rank=2 scaffold_78 . exon 140286 140519 . - . ID=Physo120467.2;Parent=Physo120467;constitutive=1;rank=2 scaffold_78 . CDS 141570 142559 . - 0 ID=Physo120467;Parent=Physo120467;rank=1 scaffold_78 . exon 141570 142619 . - . ID=Physo120467.1;Parent=Physo120467;constitutive=1;ensembl_phase=-1;rank=1 scaffold_78 ensembl protein_coding_gene 137785 138795 . + . ID=Physo139768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780029;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 137785 138795 . + . ID=Physo139768;Parent=Physo139768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 137785 138795 . + 0 ID=Physo139768;Parent=Physo139768;rank=1 scaffold_78 . exon 137785 138795 . + . ID=Physo139768.1;Parent=Physo139768;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 143971 145218 . - . ID=Physo139770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780031;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 143971 145218 . - . ID=Physo139770;Parent=Physo139770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 143971 145218 . - 0 ID=Physo139770;Parent=Physo139770;rank=1 scaffold_78 . exon 143971 145218 . - . ID=Physo139770.1;Parent=Physo139770;constitutive=1;rank=1 scaffold_78 . repeat_region 152887 152919 . ? . description=trf scaffold_78 . repeat_region 152934 153081 . ? . description=trf scaffold_78 . repeat_region 152978 153018 . ? . description=trf scaffold_78 . repeat_region 153028 153109 . ? . description=trf scaffold_78 . repeat_region 153042 153109 . ? . description=trf scaffold_78 . repeat_region 153110 153168 . ? . description=trf scaffold_78 . biological_region 155153 155154 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 154466 155833 . + . ID=Physo109235;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_780004;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 154466 155833 . + . ID=Physo109235;Parent=Physo109235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 154466 154536 . + . ID=Physo109235.1;Parent=Physo109235;constitutive=1;ensembl_phase=-1;rank=1 scaffold_78 . CDS 154504 154536 . + 0 ID=Physo109235;Parent=Physo109235;rank=1 scaffold_78 . CDS 154600 155676 . + 0 ID=Physo109235;Parent=Physo109235;rank=2 scaffold_78 . exon 154600 155833 . + . ID=Physo109235.2;Parent=Physo109235;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_78 ensembl protein_coding_gene 148756 149204 . - . ID=Physo120469;biotype=protein_coding;external_name=estExt_Genewise1.C_780041;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 148756 149204 . - . ID=Physo120469;Parent=Physo120469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 148756 148810 . - . ID=Physo120469.2;Parent=Physo120469;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_78 . CDS 148766 148810 . - 0 ID=Physo120469;Parent=Physo120469;rank=2 scaffold_78 . CDS 148869 149102 . - 0 ID=Physo120469;Parent=Physo120469;rank=1 scaffold_78 . exon 148869 149204 . - . ID=Physo120469.1;Parent=Physo120469;constitutive=1;ensembl_phase=-1;rank=1 scaffold_78 ensembl protein_coding_gene 152755 153402 . - . ID=Physo139771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780032;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 152755 153402 . - . ID=Physo139771;Parent=Physo139771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 152755 153402 . - 0 ID=Physo139771;Parent=Physo139771;rank=1 scaffold_78 . exon 152755 153402 . - . ID=Physo139771.1;Parent=Physo139771;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 155923 156546 . - . ID=Physo139773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780034;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 155923 156546 . - . ID=Physo139773;Parent=Physo139773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 155923 156546 . - 0 ID=Physo139773;Parent=Physo139773;rank=1 scaffold_78 . exon 155923 156546 . - . ID=Physo139773.1;Parent=Physo139773;constitutive=1;rank=1 scaffold_78 . repeat_region 159073 162981 . ? . description=dust scaffold_78 ensembl protein_coding_gene 157858 164129 . + . ID=Physo139774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780035;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 157858 164129 . + . ID=Physo139774;Parent=Physo139774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 157858 159051 . + 0 ID=Physo139774;Parent=Physo139774;rank=1 scaffold_78 . exon 157858 159051 . + . ID=Physo139774.1;Parent=Physo139774;constitutive=1;rank=1 scaffold_78 . CDS 162984 163724 . + 0 ID=Physo139774;Parent=Physo139774;rank=2 scaffold_78 . exon 162984 163724 . + . ID=Physo139774.2;Parent=Physo139774;constitutive=1;rank=2 scaffold_78 . CDS 163796 163924 . + 0 ID=Physo139774;Parent=Physo139774;rank=3 scaffold_78 . exon 163796 164129 . + . ID=Physo139774.3;Parent=Physo139774;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_78 ensembl protein_coding_gene 164283 165515 . + . ID=Physo139775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780036;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 164283 165515 . + . ID=Physo139775;Parent=Physo139775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 164283 164484 . + 0 ID=Physo139775;Parent=Physo139775;rank=1 scaffold_78 . exon 164283 164484 . + . ID=Physo139775.1;Parent=Physo139775;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 164579 165195 . + 0 ID=Physo139775;Parent=Physo139775;rank=2 scaffold_78 . exon 164579 165195 . + . ID=Physo139775.2;Parent=Physo139775;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 165489 165515 . + 0 ID=Physo139775;Parent=Physo139775;rank=3 scaffold_78 . exon 165489 165515 . + . ID=Physo139775.3;Parent=Physo139775;constitutive=1;rank=3 scaffold_78 . biological_region 171733 171734 0.999 - . logic_name=eponine scaffold_78 . biological_region 172225 172235 0.999 + . logic_name=eponine scaffold_78 . biological_region 172259 172264 0.999 + . logic_name=eponine scaffold_78 . biological_region 172335 172337 0.999 - . logic_name=eponine scaffold_78 . biological_region 172355 172361 0.999 - . logic_name=eponine scaffold_78 . biological_region 172370 172372 0.999 - . logic_name=eponine scaffold_78 . biological_region 172405 172411 0.999 - . logic_name=eponine scaffold_78 . biological_region 173499 173502 0.999 - . logic_name=eponine scaffold_78 . biological_region 173553 173557 0.999 + . logic_name=eponine scaffold_78 ensembl protein_coding_gene 166100 166861 . + . ID=Physo120480;biotype=protein_coding;external_name=estExt_Genewise1.C_780052;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 166100 166861 . + . ID=Physo120480;Parent=Physo120480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 166100 166616 . + . ID=Physo120480.1;Parent=Physo120480;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_78 . CDS 166194 166469 . + 0 ID=Physo120480;Parent=Physo120480;rank=1 scaffold_78 . exon 166755 166861 . + . ID=Physo120480.2;Parent=Physo120480;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_78 ensembl protein_coding_gene 167992 169137 . + . ID=Physo139776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780037;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 167992 169137 . + . ID=Physo139776;Parent=Physo139776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 167992 169137 . + 0 ID=Physo139776;Parent=Physo139776;rank=1 scaffold_78 . exon 167992 169137 . + . ID=Physo139776.1;Parent=Physo139776;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 170664 171053 . + . ID=Physo139777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780038;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 170664 171053 . + . ID=Physo139777;Parent=Physo139777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 170664 171053 . + 0 ID=Physo139777;Parent=Physo139777;rank=1 scaffold_78 . exon 170664 171053 . + . ID=Physo139777.1;Parent=Physo139777;constitutive=1;rank=1 scaffold_78 . repeat_region 175775 175782 . ? . description=dust scaffold_78 . repeat_region 177356 177370 . ? . description=dust scaffold_78 . repeat_region 177460 177469 . ? . description=dust scaffold_78 . repeat_region 178068 178110 . ? . description=trf scaffold_78 . repeat_region 178704 178758 . ? . description=trf scaffold_78 ensembl protein_coding_gene 179678 180162 . - . ID=Physo139778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780039;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 179678 180162 . - . ID=Physo139778;Parent=Physo139778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 179678 179856 . - . ID=Physo139778.2;Parent=Physo139778;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_78 . CDS 179680 179856 . - 0 ID=Physo139778;Parent=Physo139778;rank=2 scaffold_78 . CDS 179938 180162 . - 0 ID=Physo139778;Parent=Physo139778;rank=1 scaffold_78 . exon 179938 180162 . - . ID=Physo139778.1;Parent=Physo139778;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 181978 182892 . + . ID=Physo139779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780040;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 181978 182892 . + . ID=Physo139779;Parent=Physo139779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 181978 182892 . + 0 ID=Physo139779;Parent=Physo139779;rank=1 scaffold_78 . exon 181978 182892 . + . ID=Physo139779.1;Parent=Physo139779;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 183409 184442 . - . ID=Physo139780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780041;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 183409 184442 . - . ID=Physo139780;Parent=Physo139780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 183409 183664 . - 0 ID=Physo139780;Parent=Physo139780;rank=3 scaffold_78 . exon 183409 183664 . - . ID=Physo139780.3;Parent=Physo139780;constitutive=1;ensembl_phase=2;rank=3 scaffold_78 . CDS 183762 183827 . - 0 ID=Physo139780;Parent=Physo139780;rank=2 scaffold_78 . exon 183762 183827 . - . ID=Physo139780.2;Parent=Physo139780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_78 . CDS 183898 184442 . - 0 ID=Physo139780;Parent=Physo139780;rank=1 scaffold_78 . exon 183898 184442 . - . ID=Physo139780.1;Parent=Physo139780;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 . biological_region 188307 188315 0.999 + . logic_name=eponine scaffold_78 . biological_region 188352 188354 0.999 + . logic_name=eponine scaffold_78 . biological_region 188912 188913 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 188144 189073 . - . ID=Physo139781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780042;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 188144 189073 . - . ID=Physo139781;Parent=Physo139781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 188144 189073 . - 0 ID=Physo139781;Parent=Physo139781;rank=1 scaffold_78 . exon 188144 189073 . - . ID=Physo139781.1;Parent=Physo139781;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 190750 191889 . + . ID=Physo139782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780043;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 190750 191889 . + . ID=Physo139782;Parent=Physo139782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 190750 191889 . + 0 ID=Physo139782;Parent=Physo139782;rank=1 scaffold_78 . exon 190750 191889 . + . ID=Physo139782.1;Parent=Physo139782;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 194284 195438 . - . ID=Physo139783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780044;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 194284 195438 . - . ID=Physo139783;Parent=Physo139783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 194284 195438 . - 0 ID=Physo139783;Parent=Physo139783;rank=1 scaffold_78 . exon 194284 195438 . - . ID=Physo139783.1;Parent=Physo139783;constitutive=1;rank=1 scaffold_78 . repeat_region 196172 196180 . ? . description=dust scaffold_78 ensembl protein_coding_gene 196262 197539 . - . ID=Physo139784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780045;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 196262 197539 . - . ID=Physo139784;Parent=Physo139784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 196262 197539 . - 0 ID=Physo139784;Parent=Physo139784;rank=1 scaffold_78 . exon 196262 197539 . - . ID=Physo139784.1;Parent=Physo139784;constitutive=1;rank=1 scaffold_78 . biological_region 205655 205663 0.999 - . logic_name=eponine scaffold_78 . biological_region 206879 206881 0.999 + . logic_name=eponine scaffold_78 . biological_region 214030 214032 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 205536 207968 . + . ID=Physo139786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780047;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 205536 207968 . + . ID=Physo139786;Parent=Physo139786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 205536 206078 . + 0 ID=Physo139786;Parent=Physo139786;rank=1 scaffold_78 . exon 205536 206078 . + . ID=Physo139786.1;Parent=Physo139786;constitutive=1;rank=1 scaffold_78 . CDS 206141 206354 . + 0 ID=Physo139786;Parent=Physo139786;rank=2 scaffold_78 . exon 206141 206354 . + . ID=Physo139786.2;Parent=Physo139786;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_78 . CDS 206437 207069 . + 0 ID=Physo139786;Parent=Physo139786;rank=3 scaffold_78 . exon 206437 207069 . + . ID=Physo139786.3;Parent=Physo139786;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_78 . CDS 207406 207824 . + 0 ID=Physo139786;Parent=Physo139786;rank=4 scaffold_78 . exon 207406 207968 . + . ID=Physo139786.4;Parent=Physo139786;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_78 ensembl protein_coding_gene 211962 212441 . + . ID=Physo139787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780048;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 211962 212441 . + . ID=Physo139787;Parent=Physo139787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 211962 212441 . + 0 ID=Physo139787;Parent=Physo139787;rank=1 scaffold_78 . exon 211962 212441 . + . ID=Physo139787.1;Parent=Physo139787;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 212875 214108 . + . ID=Physo139788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780049;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 212875 214108 . + . ID=Physo139788;Parent=Physo139788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 212875 214029 . + 0 ID=Physo139788;Parent=Physo139788;rank=1 scaffold_78 . exon 212875 214108 . + . ID=Physo139788.1;Parent=Physo139788;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_78 . repeat_region 215890 216072 . + . description=Polinton-1_PI scaffold_78 . repeat_region 222019 222072 . ? . description=dust scaffold_78 . repeat_region 222273 222282 . ? . description=dust scaffold_78 ensembl protein_coding_gene 217551 218406 . - . ID=Physo109236;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_780005;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 217551 218406 . - . ID=Physo109236;Parent=Physo109236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 217551 217930 . - 0 ID=Physo109236;Parent=Physo109236;rank=2 scaffold_78 . exon 217551 217930 . - . ID=Physo109236.2;Parent=Physo109236;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 218001 218406 . - 0 ID=Physo109236;Parent=Physo109236;rank=1 scaffold_78 . exon 218001 218406 . - . ID=Physo109236.1;Parent=Physo109236;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 218747 220418 . + . ID=Physo120492;biotype=protein_coding;external_name=estExt_Genewise1.C_780064;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 218747 220418 . + . ID=Physo120492;Parent=Physo120492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 218747 220418 . + . ID=Physo120492.1;Parent=Physo120492;constitutive=1;ensembl_phase=-1;rank=1 scaffold_78 . CDS 219276 220418 . + 0 ID=Physo120492;Parent=Physo120492;rank=1 scaffold_78 ensembl protein_coding_gene 214543 215742 . + . ID=Physo139789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780050;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 214543 215742 . + . ID=Physo139789;Parent=Physo139789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 214543 215742 . + . ID=Physo139789.1;Parent=Physo139789;constitutive=1;ensembl_phase=-1;rank=1 scaffold_78 . CDS 214573 215742 . + 0 ID=Physo139789;Parent=Physo139789;rank=1 scaffold_78 ensembl protein_coding_gene 216484 217211 . - . ID=Physo139790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780051;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 216484 217211 . - . ID=Physo139790;Parent=Physo139790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 216484 216489 . - 0 ID=Physo139790;Parent=Physo139790;rank=2 scaffold_78 . exon 216484 216489 . - . ID=Physo139790.2;Parent=Physo139790;constitutive=1;rank=2 scaffold_78 . CDS 216630 217211 . - 0 ID=Physo139790;Parent=Physo139790;rank=1 scaffold_78 . exon 216630 217211 . - . ID=Physo139790.1;Parent=Physo139790;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 220831 222084 . - . ID=Physo139793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780054;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 220831 222084 . - . ID=Physo139793;Parent=Physo139793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 220831 222084 . - 0 ID=Physo139793;Parent=Physo139793;rank=1 scaffold_78 . exon 220831 222084 . - . ID=Physo139793.1;Parent=Physo139793;constitutive=1;rank=1 scaffold_78 . repeat_region 229892 229965 . ? . description=trf scaffold_78 . biological_region 231560 231564 0.999 + . logic_name=eponine scaffold_78 . repeat_region 232048 232083 . ? . description=trf scaffold_78 . biological_region 232516 232517 0.999 - . logic_name=eponine scaffold_78 . biological_region 232595 232595 0.999 + . logic_name=eponine scaffold_78 ensembl protein_coding_gene 227204 228541 . + . ID=Physo139794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780055;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 227204 228541 . + . ID=Physo139794;Parent=Physo139794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 227204 227224 . + 0 ID=Physo139794;Parent=Physo139794;rank=1 scaffold_78 . exon 227204 227224 . + . ID=Physo139794.1;Parent=Physo139794;constitutive=1;rank=1 scaffold_78 . CDS 227337 227647 . + 0 ID=Physo139794;Parent=Physo139794;rank=2 scaffold_78 . exon 227337 227647 . + . ID=Physo139794.2;Parent=Physo139794;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_78 . CDS 227720 227885 . + 0 ID=Physo139794;Parent=Physo139794;rank=3 scaffold_78 . exon 227720 227885 . + . ID=Physo139794.3;Parent=Physo139794;constitutive=1;ensembl_phase=2;rank=3 scaffold_78 . CDS 227909 228541 . + 0 ID=Physo139794;Parent=Physo139794;rank=4 scaffold_78 . exon 227909 228541 . + . ID=Physo139794.4;Parent=Physo139794;constitutive=1;rank=4 scaffold_78 ensembl protein_coding_gene 228685 238792 . - . ID=Physo139795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780056;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 228685 238792 . - . ID=Physo139795;Parent=Physo139795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 228685 234166 . - 0 ID=Physo139795;Parent=Physo139795;rank=3 scaffold_78 . exon 228685 234166 . - . ID=Physo139795.3;Parent=Physo139795;constitutive=1;ensembl_phase=2;rank=3 scaffold_78 . CDS 234301 238571 . - 0 ID=Physo139795;Parent=Physo139795;rank=2 scaffold_78 . CDS 238643 238792 . - 0 ID=Physo139795;Parent=Physo139795;rank=1 scaffold_78 . repeat_region 239684 239693 . ? . description=dust scaffold_78 . repeat_region 239793 239837 . ? . description=dust scaffold_78 ensembl protein_coding_gene 239208 239952 . - . ID=Physo109237;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_780006;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 239208 239952 . - . ID=Physo109237;Parent=Physo109237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 239208 239344 . - . ID=Physo109237.3;Parent=Physo109237;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_78 . CDS 239308 239344 . - 0 ID=Physo109237;Parent=Physo109237;rank=3 scaffold_78 . CDS 239371 239614 . - 0 ID=Physo109237;Parent=Physo109237;rank=2 scaffold_78 . exon 239371 239614 . - . ID=Physo109237.2;Parent=Physo109237;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_78 . CDS 239844 239928 . - 0 ID=Physo109237;Parent=Physo109237;rank=1 scaffold_78 . exon 239844 239952 . - . ID=Physo109237.1;Parent=Physo109237;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_78 . exon 234301 238571 . - . ID=Physo139795.2;Parent=Physo139795;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_78 . exon 238643 238792 . - . ID=Physo139795.1;Parent=Physo139795;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 241039 241759 . - . ID=Physo139797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780058;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 241039 241759 . - . ID=Physo139797;Parent=Physo139797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 241039 241068 . - . ID=Physo139797.2;Parent=Physo139797;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_78 . CDS 241040 241068 . - 0 ID=Physo139797;Parent=Physo139797;rank=2 scaffold_78 . CDS 241102 241759 . - 0 ID=Physo139797;Parent=Physo139797;rank=1 scaffold_78 . exon 241102 241759 . - . ID=Physo139797.1;Parent=Physo139797;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . repeat_region 244887 244920 . ? . description=trf scaffold_78 . biological_region 248461 248463 0.999 - . logic_name=eponine scaffold_78 . biological_region 248478 248484 0.999 - . logic_name=eponine scaffold_78 . biological_region 248572 248572 0.999 + . logic_name=eponine scaffold_78 . biological_region 248930 248932 0.999 - . logic_name=eponine scaffold_78 . repeat_region 249186 249212 . ? . description=trf scaffold_78 . biological_region 252367 252369 0.999 + . logic_name=eponine scaffold_78 ensembl protein_coding_gene 247966 249441 . - . ID=Physo139798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780059;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 247966 249441 . - . ID=Physo139798;Parent=Physo139798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 247966 249441 . - 0 ID=Physo139798;Parent=Physo139798;rank=1 scaffold_78 . exon 247966 249441 . - . ID=Physo139798.1;Parent=Physo139798;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 250398 252525 . - . ID=Physo139799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780060;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 250398 252525 . - . ID=Physo139799;Parent=Physo139799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 250398 250458 . - 0 ID=Physo139799;Parent=Physo139799;rank=3 scaffold_78 . exon 250398 250458 . - . ID=Physo139799.3;Parent=Physo139799;constitutive=1;ensembl_phase=2;rank=3 scaffold_78 . CDS 250523 252031 . - 0 ID=Physo139799;Parent=Physo139799;rank=2 scaffold_78 . exon 250523 252031 . - . ID=Physo139799.2;Parent=Physo139799;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_78 . CDS 252482 252525 . - 0 ID=Physo139799;Parent=Physo139799;rank=1 scaffold_78 . exon 252482 252525 . - . ID=Physo139799.1;Parent=Physo139799;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 . repeat_region 253864 253872 . ? . description=dust scaffold_78 . repeat_region 255071 255081 . ? . description=dust scaffold_78 . repeat_region 261049 261099 . ? . description=dust scaffold_78 ensembl protein_coding_gene 254284 258473 . + . ID=Physo139800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780061;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 254284 258473 . + . ID=Physo139800;Parent=Physo139800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 254284 255006 . + 0 ID=Physo139800;Parent=Physo139800;rank=1 scaffold_78 . exon 254284 255006 . + . ID=Physo139800.1;Parent=Physo139800;constitutive=1;rank=1 scaffold_78 . CDS 255429 256181 . + 0 ID=Physo139800;Parent=Physo139800;rank=2 scaffold_78 . exon 255429 256181 . + . ID=Physo139800.2;Parent=Physo139800;constitutive=1;rank=2 scaffold_78 . CDS 256236 256461 . + 0 ID=Physo139800;Parent=Physo139800;rank=3 scaffold_78 . exon 256236 256461 . + . ID=Physo139800.3;Parent=Physo139800;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_78 . CDS 257126 258267 . + 0 ID=Physo139800;Parent=Physo139800;rank=4 scaffold_78 . exon 257126 258267 . + . ID=Physo139800.4;Parent=Physo139800;constitutive=1;ensembl_phase=1;rank=4 scaffold_78 . CDS 258471 258473 . + 0 ID=Physo139800;Parent=Physo139800;rank=5 scaffold_78 . exon 258471 258473 . + . ID=Physo139800.5;Parent=Physo139800;constitutive=1;rank=5 scaffold_78 ensembl protein_coding_gene 258944 259579 . - . ID=Physo139801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780062;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 258944 259579 . - . ID=Physo139801;Parent=Physo139801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 258944 259579 . - . ID=Physo139801.1;Parent=Physo139801;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_78 . CDS 259053 259541 . - 0 ID=Physo139801;Parent=Physo139801;rank=1 scaffold_78 . biological_region 266550 266553 0.999 - . logic_name=eponine scaffold_78 . biological_region 266876 266877 0.999 + . logic_name=eponine scaffold_78 . biological_region 268537 268539 0.999 - . logic_name=eponine scaffold_78 . biological_region 269459 269463 0.999 + . logic_name=eponine scaffold_78 . biological_region 269889 269890 0.999 + . logic_name=eponine scaffold_78 . biological_region 269899 269904 0.999 - . logic_name=eponine scaffold_78 . biological_region 269904 269906 0.999 + . logic_name=eponine scaffold_78 . biological_region 272721 272725 0.999 + . logic_name=eponine scaffold_78 . biological_region 272863 272864 0.999 - . logic_name=eponine scaffold_78 . biological_region 272880 272881 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 265631 267904 . + . ID=Physo139802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780063;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 265631 267904 . + . ID=Physo139802;Parent=Physo139802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 265631 267904 . + 0 ID=Physo139802;Parent=Physo139802;rank=1 scaffold_78 . exon 265631 267904 . + . ID=Physo139802.1;Parent=Physo139802;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 268425 269687 . - . ID=Physo139803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780064;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 268425 269687 . - . ID=Physo139803;Parent=Physo139803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 268425 269687 . - 0 ID=Physo139803;Parent=Physo139803;rank=1 scaffold_78 . exon 268425 269687 . - . ID=Physo139803.1;Parent=Physo139803;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 271679 273289 . - . ID=Physo139804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780065;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 271679 273289 . - . ID=Physo139804;Parent=Physo139804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 271679 273289 . - 0 ID=Physo139804;Parent=Physo139804;rank=1 scaffold_78 . exon 271679 273289 . - . ID=Physo139804.1;Parent=Physo139804;constitutive=1;rank=1 scaffold_78 . repeat_region 277754 277762 . ? . description=dust scaffold_78 . repeat_region 282371 282379 . ? . description=dust scaffold_78 ensembl protein_coding_gene 281030 281570 . - . ID=Physo139805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780066;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 281030 281570 . - . ID=Physo139805;Parent=Physo139805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 281030 281122 . - 0 ID=Physo139805;Parent=Physo139805;rank=3 scaffold_78 . exon 281030 281122 . - . ID=Physo139805.3;Parent=Physo139805;constitutive=1;rank=3 scaffold_78 . CDS 281223 281297 . - 0 ID=Physo139805;Parent=Physo139805;rank=2 scaffold_78 . exon 281223 281297 . - . ID=Physo139805.2;Parent=Physo139805;constitutive=1;rank=2 scaffold_78 . CDS 281352 281570 . - 0 ID=Physo139805;Parent=Physo139805;rank=1 scaffold_78 . exon 281352 281570 . - . ID=Physo139805.1;Parent=Physo139805;constitutive=1;rank=1 scaffold_78 . biological_region 286660 286660 0.999 + . logic_name=eponine scaffold_78 . biological_region 287012 287013 0.999 + . logic_name=eponine scaffold_78 . biological_region 287202 287206 0.999 + . logic_name=eponine scaffold_78 . biological_region 287264 287266 0.999 + . logic_name=eponine scaffold_78 . repeat_region 287611 289990 . + . description=GypsyPi-1c_I-int scaffold_78 . biological_region 289129 289129 0.999 - . logic_name=eponine scaffold_78 . biological_region 291158 291159 0.999 - . logic_name=eponine scaffold_78 . biological_region 291172 291172 0.999 - . logic_name=eponine scaffold_78 . biological_region 291696 291698 0.999 - . logic_name=eponine scaffold_78 . biological_region 291704 291712 0.999 + . logic_name=eponine scaffold_78 . biological_region 291796 291797 0.999 - . logic_name=eponine scaffold_78 . biological_region 291813 291817 0.999 - . logic_name=eponine scaffold_78 ensembl protein_coding_gene 286282 290305 . + . ID=Physo139806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780067;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 286282 290305 . + . ID=Physo139806;Parent=Physo139806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 286282 286825 . + 0 ID=Physo139806;Parent=Physo139806;rank=1 scaffold_78 . exon 286282 286825 . + . ID=Physo139806.1;Parent=Physo139806;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 287025 287929 . + 0 ID=Physo139806;Parent=Physo139806;rank=2 scaffold_78 . exon 287025 287929 . + . ID=Physo139806.2;Parent=Physo139806;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 288040 288618 . + 0 ID=Physo139806;Parent=Physo139806;rank=3 scaffold_78 . exon 288040 288618 . + . ID=Physo139806.3;Parent=Physo139806;constitutive=1;rank=3 scaffold_78 . CDS 288712 290258 . + 0 ID=Physo139806;Parent=Physo139806;rank=4 scaffold_78 . exon 288712 290258 . + . ID=Physo139806.4;Parent=Physo139806;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_78 . CDS 290299 290305 . + 0 ID=Physo139806;Parent=Physo139806;rank=5 scaffold_78 . exon 290299 290305 . + . ID=Physo139806.5;Parent=Physo139806;constitutive=1;ensembl_phase=2;rank=5 scaffold_78 ensembl protein_coding_gene 290558 292061 . - . ID=Physo139807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780068;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 290558 292061 . - . ID=Physo139807;Parent=Physo139807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 290558 290872 . - 0 ID=Physo139807;Parent=Physo139807;rank=4 scaffold_78 . exon 290558 290872 . - . ID=Physo139807.4;Parent=Physo139807;constitutive=1;rank=4 scaffold_78 . CDS 291046 291280 . - 0 ID=Physo139807;Parent=Physo139807;rank=3 scaffold_78 . exon 291046 291280 . - . ID=Physo139807.3;Parent=Physo139807;constitutive=1;ensembl_phase=2;rank=3 scaffold_78 . CDS 291575 291657 . - 0 ID=Physo139807;Parent=Physo139807;rank=2 scaffold_78 . exon 291575 291657 . - . ID=Physo139807.2;Parent=Physo139807;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_78 . CDS 291696 292061 . - 0 ID=Physo139807;Parent=Physo139807;rank=1 scaffold_78 . exon 291696 292061 . - . ID=Physo139807.1;Parent=Physo139807;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 295421 296725 . - . ID=Physo139808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780069;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 295421 296725 . - . ID=Physo139808;Parent=Physo139808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 295421 296725 . - 0 ID=Physo139808;Parent=Physo139808;rank=1 scaffold_78 . exon 295421 296725 . - . ID=Physo139808.1;Parent=Physo139808;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 299226 300505 . + . ID=Physo139809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780070;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 299226 300505 . + . ID=Physo139809;Parent=Physo139809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 299226 299349 . + 0 ID=Physo139809;Parent=Physo139809;rank=1 scaffold_78 . exon 299226 299349 . + . ID=Physo139809.1;Parent=Physo139809;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 299432 299469 . + 0 ID=Physo139809;Parent=Physo139809;rank=2 scaffold_78 . exon 299432 299469 . + . ID=Physo139809.2;Parent=Physo139809;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 299537 300505 . + 0 ID=Physo139809;Parent=Physo139809;rank=3 scaffold_78 . exon 299537 300505 . + . ID=Physo139809.3;Parent=Physo139809;constitutive=1;rank=3 scaffold_78 . biological_region 304707 304707 0.999 + . logic_name=eponine scaffold_78 . biological_region 304748 304760 0.999 - . logic_name=eponine scaffold_78 . biological_region 304774 304776 0.999 - . logic_name=eponine scaffold_78 . biological_region 304806 304806 0.999 + . logic_name=eponine scaffold_78 . biological_region 305600 305600 0.999 - . logic_name=eponine scaffold_78 . biological_region 305622 305622 0.999 + . logic_name=eponine scaffold_78 . repeat_region 305922 305963 . ? . description=trf scaffold_78 . repeat_region 306234 306276 . ? . description=trf scaffold_78 . repeat_region 306513 306541 . ? . description=trf scaffold_78 . biological_region 307844 307848 0.999 + . logic_name=eponine scaffold_78 . repeat_region 309156 309163 . ? . description=dust scaffold_78 . repeat_region 309333 309388 . ? . description=dust scaffold_78 . repeat_region 309428 309450 . ? . description=trf scaffold_78 . biological_region 309538 309541 0.999 - . logic_name=eponine scaffold_78 . biological_region 309543 309547 0.999 + . logic_name=eponine scaffold_78 . repeat_region 310457 310465 . ? . description=dust scaffold_78 . repeat_region 311285 311293 . ? . description=dust scaffold_78 ensembl protein_coding_gene 303865 304869 . - . ID=Physo139810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780071;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 303865 304869 . - . ID=Physo139810;Parent=Physo139810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 303865 304869 . - 0 ID=Physo139810;Parent=Physo139810;rank=1 scaffold_78 . exon 303865 304869 . - . ID=Physo139810.1;Parent=Physo139810;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 305520 308677 . + . ID=Physo139811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780072;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 305520 308677 . + . ID=Physo139811;Parent=Physo139811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 305520 305772 . + 0 ID=Physo139811;Parent=Physo139811;rank=1 scaffold_78 . exon 305520 305772 . + . ID=Physo139811.1;Parent=Physo139811;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 305863 308540 . + 0 ID=Physo139811;Parent=Physo139811;rank=2 scaffold_78 . exon 305863 308677 . + . ID=Physo139811.2;Parent=Physo139811;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_78 ensembl protein_coding_gene 308703 309636 . - . ID=Physo139812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780073;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 308703 309636 . - . ID=Physo139812;Parent=Physo139812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 308703 309108 . - . ID=Physo139812.3;Parent=Physo139812;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_78 . CDS 308755 309108 . - 0 ID=Physo139812;Parent=Physo139812;rank=3 scaffold_78 . CDS 309182 309327 . - 0 ID=Physo139812;Parent=Physo139812;rank=2 scaffold_78 . exon 309182 309327 . - . ID=Physo139812.2;Parent=Physo139812;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 309399 309636 . - 0 ID=Physo139812;Parent=Physo139812;rank=1 scaffold_78 . exon 309399 309636 . - . ID=Physo139812.1;Parent=Physo139812;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 314210 315138 . - . ID=Physo139813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780074;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 314210 315138 . - . ID=Physo139813;Parent=Physo139813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 314210 314347 . - 0 ID=Physo139813;Parent=Physo139813;rank=3 scaffold_78 . exon 314210 314347 . - . ID=Physo139813.3;Parent=Physo139813;constitutive=1;rank=3 scaffold_78 . CDS 314502 314689 . - 0 ID=Physo139813;Parent=Physo139813;rank=2 scaffold_78 . exon 314502 314689 . - . ID=Physo139813.2;Parent=Physo139813;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 314763 315138 . - 0 ID=Physo139813;Parent=Physo139813;rank=1 scaffold_78 . exon 314763 315138 . - . ID=Physo139813.1;Parent=Physo139813;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 316864 317715 . - . ID=Physo139814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780075;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 316864 317715 . - . ID=Physo139814;Parent=Physo139814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 316864 316978 . - 0 ID=Physo139814;Parent=Physo139814;rank=3 scaffold_78 . exon 316864 316978 . - . ID=Physo139814.3;Parent=Physo139814;constitutive=1;ensembl_phase=2;rank=3 scaffold_78 . CDS 317119 317275 . - 0 ID=Physo139814;Parent=Physo139814;rank=2 scaffold_78 . exon 317119 317275 . - . ID=Physo139814.2;Parent=Physo139814;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_78 . CDS 317349 317715 . - 0 ID=Physo139814;Parent=Physo139814;rank=1 scaffold_78 . exon 317349 317715 . - . ID=Physo139814.1;Parent=Physo139814;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 ensembl protein_coding_gene 318949 321085 . - . ID=Physo139815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780076;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 318949 321085 . - . ID=Physo139815;Parent=Physo139815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 318949 321085 . - . ID=Physo139815.1;Parent=Physo139815;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_78 . CDS 319073 321085 . - 0 ID=Physo139815;Parent=Physo139815;rank=1 scaffold_78 . repeat_region 322246 322254 . ? . description=dust scaffold_78 . repeat_region 324245 324252 . ? . description=dust scaffold_78 . repeat_region 324576 324590 . ? . description=dust scaffold_78 . biological_region 326625 326626 0.999 - . logic_name=eponine scaffold_78 . biological_region 326800 326803 0.999 + . logic_name=eponine scaffold_78 . repeat_region 328462 328470 . ? . description=dust scaffold_78 . biological_region 328583 328584 0.999 + . logic_name=eponine scaffold_78 . repeat_region 328952 328985 . ? . description=trf scaffold_78 . repeat_region 329655 329667 . ? . description=dust scaffold_78 . repeat_region 330444 330454 . ? . description=dust scaffold_78 . repeat_region 330711 330726 . ? . description=dust scaffold_78 . repeat_region 331166 331184 . ? . description=dust scaffold_78 . biological_region 341526 341531 0.999 + . logic_name=eponine scaffold_78 . repeat_region 345664 345671 . ? . description=dust scaffold_78 ensembl protein_coding_gene 348128 349544 . + . ID=Physo139816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780077;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 348128 349544 . + . ID=Physo139816;Parent=Physo139816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 348128 348394 . + 0 ID=Physo139816;Parent=Physo139816;rank=1 scaffold_78 . exon 348128 348394 . + . ID=Physo139816.1;Parent=Physo139816;constitutive=1;rank=1 scaffold_78 . CDS 348619 349089 . + 0 ID=Physo139816;Parent=Physo139816;rank=2 scaffold_78 . exon 348619 349089 . + . ID=Physo139816.2;Parent=Physo139816;constitutive=1;rank=2 scaffold_78 . CDS 349197 349544 . + 0 ID=Physo139816;Parent=Physo139816;rank=3 scaffold_78 . exon 349197 349544 . + . ID=Physo139816.3;Parent=Physo139816;constitutive=1;rank=3 scaffold_78 ensembl protein_coding_gene 352398 353129 . + . ID=Physo109238;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_780007;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 352398 353129 . + . ID=Physo109238;Parent=Physo109238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 352398 353129 . + 0 ID=Physo109238;Parent=Physo109238;rank=1 scaffold_78 . exon 352398 353129 . + . ID=Physo109238.1;Parent=Physo109238;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 354927 355924 . - . ID=Physo139818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780079;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 354927 355924 . - . ID=Physo139818;Parent=Physo139818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 354927 354992 . - 0 ID=Physo139818;Parent=Physo139818;rank=3 scaffold_78 . exon 354927 354992 . - . ID=Physo139818.3;Parent=Physo139818;constitutive=1;rank=3 scaffold_78 . CDS 355067 355511 . - 0 ID=Physo139818;Parent=Physo139818;rank=2 scaffold_78 . exon 355067 355511 . - . ID=Physo139818.2;Parent=Physo139818;constitutive=1;ensembl_phase=2;rank=2 scaffold_78 . CDS 355602 355924 . - 0 ID=Physo139818;Parent=Physo139818;rank=1 scaffold_78 . exon 355602 355924 . - . ID=Physo139818.1;Parent=Physo139818;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_78 ensembl protein_coding_gene 359256 359904 . + . ID=Physo139819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780080;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 359256 359904 . + . ID=Physo139819;Parent=Physo139819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 359256 359904 . + . ID=Physo139819.1;Parent=Physo139819;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_78 . CDS 359263 359799 . + 0 ID=Physo139819;Parent=Physo139819;rank=1 scaffold_78 ensembl protein_coding_gene 360018 362165 . - . ID=Physo139820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780081;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 360018 362165 . - . ID=Physo139820;Parent=Physo139820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . exon 360018 360950 . - . ID=Physo139820.4;Parent=Physo139820;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_78 . CDS 360230 360950 . - 0 ID=Physo139820;Parent=Physo139820;rank=4 scaffold_78 . CDS 361060 361538 . - 0 ID=Physo139820;Parent=Physo139820;rank=3 scaffold_78 . CDS 361606 361899 . - 0 ID=Physo139820;Parent=Physo139820;rank=2 scaffold_78 . CDS 362046 362165 . - 0 ID=Physo139820;Parent=Physo139820;rank=1 scaffold_78 . biological_region 360673 360674 0.999 - . logic_name=eponine scaffold_78 . biological_region 362038 362041 0.999 + . logic_name=eponine scaffold_78 . biological_region 362059 362061 0.999 + . logic_name=eponine scaffold_78 . biological_region 362401 362406 0.999 + . logic_name=eponine scaffold_78 . biological_region 362529 362531 0.999 + . logic_name=eponine scaffold_78 . biological_region 362557 362560 0.999 - . logic_name=eponine scaffold_78 . biological_region 363323 363329 0.999 + . logic_name=eponine scaffold_78 . repeat_region 365445 365508 . ? . description=trf scaffold_78 . repeat_region 365445 365512 . ? . description=trf scaffold_78 . exon 361060 361538 . - . ID=Physo139820.3;Parent=Physo139820;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_78 . exon 361606 361899 . - . ID=Physo139820.2;Parent=Physo139820;constitutive=1;rank=2 scaffold_78 . exon 362046 362165 . - . ID=Physo139820.1;Parent=Physo139820;constitutive=1;rank=1 scaffold_78 ensembl protein_coding_gene 367724 368821 . + . ID=Physo139821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_780082;logic_name=jgi_physo1_1 scaffold_78 ensembl transcript 367724 368821 . + . ID=Physo139821;Parent=Physo139821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_78 . CDS 367724 368024 . + 0 ID=Physo139821;Parent=Physo139821;rank=1 scaffold_78 . exon 367724 368024 . + . ID=Physo139821.1;Parent=Physo139821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . CDS 368077 368246 . + 0 ID=Physo139821;Parent=Physo139821;rank=2 scaffold_78 . exon 368077 368246 . + . ID=Physo139821.2;Parent=Physo139821;constitutive=1;ensembl_phase=1;rank=2 scaffold_78 . CDS 368396 368821 . + 0 ID=Physo139821;Parent=Physo139821;rank=3 scaffold_78 . exon 368396 368821 . + . ID=Physo139821.3;Parent=Physo139821;constitutive=1;rank=3 scaffold_78 . repeat_region 371150 371163 . ? . description=dust scaffold_78 . repeat_region 374253 374263 . ? . description=dust scaffold_78 . repeat_region 376318 376326 . ? . description=dust scaffold_78 . repeat_region 377976 377984 . ? . description=dust scaffold_78 . repeat_region 379928 379982 . ? . description=dust scaffold_78 ensembl tRNA_gene 376628 376700 . + . ID=EPrPSOG00000000191;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_78 ensembl transcript 376628 376700 . + . ID=EPrPSOT00000000191;Parent=EPrPSOG00000000191;biotype=tRNA;logic_name=ncrna_eg scaffold_78 ensembl tRNA_gene 377745 377817 . + . ID=EPrPSOG00000000269;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_78 ensembl transcript 377745 377817 . + . ID=EPrPSOT00000000269;Parent=EPrPSOG00000000269;biotype=tRNA;logic_name=ncrna_eg scaffold_78 . exon 376628 376700 . + . ID=EPrPSOE00000000191;Parent=EPrPSOT00000000191;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_78 . exon 377745 377817 . + . ID=EPrPSOE00000000269;Parent=EPrPSOT00000000269;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_70 1 387926 scaffold_70 . biological_region 196 200 0.999 + . logic_name=eponine scaffold_70 . repeat_region 820 4225 . ? . description=dust scaffold_70 . biological_region 4797 4798 0.999 + . logic_name=eponine scaffold_70 . repeat_region 6002 6054 . ? . description=trf scaffold_70 . repeat_region 6451 7570 . ? . description=trf scaffold_70 . repeat_region 6564 6616 . ? . description=trf scaffold_70 . repeat_region 7056 7108 . ? . description=trf scaffold_70 . repeat_region 7571 10181 . ? . description=dust scaffold_70 ensembl protein_coding_gene 5362 7570 . - . ID=Physo139066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700001;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 5362 7570 . - . ID=Physo139066;Parent=Physo139066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 5362 6447 . - 0 ID=Physo139066;Parent=Physo139066;rank=3 scaffold_70 . exon 5362 6447 . - . ID=Physo139066.3;Parent=Physo139066;constitutive=1;rank=3 scaffold_70 . CDS 6602 7207 . - 0 ID=Physo139066;Parent=Physo139066;rank=2 scaffold_70 . exon 6602 7207 . - . ID=Physo139066.2;Parent=Physo139066;constitutive=1;rank=2 scaffold_70 . CDS 7472 7552 . - 0 ID=Physo139066;Parent=Physo139066;rank=1 scaffold_70 . exon 7472 7570 . - . ID=Physo139066.1;Parent=Physo139066;constitutive=1;ensembl_phase=-1;rank=1 scaffold_70 . repeat_region 11006 27359 . ? . description=dust scaffold_70 . repeat_region 27460 27489 . ? . description=dust scaffold_70 . repeat_region 27460 27489 . ? . description=trf scaffold_70 . repeat_region 27460 27489 . ? . description=trf scaffold_70 . repeat_region 28010 28045 . ? . description=trf scaffold_70 . repeat_region 28175 28200 . ? . description=trf scaffold_70 . repeat_region 28293 28398 . ? . description=trf scaffold_70 . repeat_region 28310 28383 . ? . description=trf scaffold_70 . repeat_region 28329 28413 . ? . description=trf scaffold_70 . repeat_region 28452 28530 . ? . description=trf scaffold_70 . repeat_region 28602 28644 . ? . description=trf scaffold_70 . repeat_region 28822 28850 . ? . description=trf scaffold_70 . repeat_region 29222 29251 . ? . description=dust scaffold_70 . repeat_region 29222 29251 . ? . description=trf scaffold_70 . repeat_region 29222 29251 . ? . description=trf scaffold_70 . repeat_region 29767 29823 . ? . description=dust scaffold_70 . repeat_region 29783 29824 . ? . description=trf scaffold_70 . repeat_region 29783 29824 . ? . description=trf scaffold_70 ensembl protein_coding_gene 27691 28827 . + . ID=Physo139067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700002;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 27691 28827 . + . ID=Physo139067;Parent=Physo139067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 27691 27693 . + 0 ID=Physo139067;Parent=Physo139067;rank=1 scaffold_70 . exon 27691 27693 . + . ID=Physo139067.1;Parent=Physo139067;constitutive=1;rank=1 scaffold_70 . CDS 27925 28827 . + 0 ID=Physo139067;Parent=Physo139067;rank=2 scaffold_70 . exon 27925 28827 . + . ID=Physo139067.2;Parent=Physo139067;constitutive=1;rank=2 scaffold_70 ensembl protein_coding_gene 29641 30558 . + . ID=Physo139068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700003;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 29641 30558 . + . ID=Physo139068;Parent=Physo139068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 29641 30558 . + 0 ID=Physo139068;Parent=Physo139068;rank=1 scaffold_70 . exon 29641 30558 . + . ID=Physo139068.1;Parent=Physo139068;constitutive=1;rank=1 scaffold_70 . biological_region 35810 35813 0.999 + . logic_name=eponine scaffold_70 . biological_region 35900 35902 0.999 - . logic_name=eponine scaffold_70 . biological_region 38493 38498 0.999 + . logic_name=eponine scaffold_70 ensembl protein_coding_gene 31431 32813 . - . ID=Physo139069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700004;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 31431 32813 . - . ID=Physo139069;Parent=Physo139069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 31431 32813 . - 0 ID=Physo139069;Parent=Physo139069;rank=1 scaffold_70 . exon 31431 32813 . - . ID=Physo139069.1;Parent=Physo139069;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 34170 34616 . - . ID=Physo139070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700005;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 34170 34616 . - . ID=Physo139070;Parent=Physo139070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 34170 34616 . - 0 ID=Physo139070;Parent=Physo139070;rank=1 scaffold_70 . exon 34170 34616 . - . ID=Physo139070.1;Parent=Physo139070;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 35246 35758 . + . ID=Physo139071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700006;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 35246 35758 . + . ID=Physo139071;Parent=Physo139071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 35246 35758 . + 0 ID=Physo139071;Parent=Physo139071;rank=1 scaffold_70 . exon 35246 35758 . + . ID=Physo139071.1;Parent=Physo139071;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 36574 37750 . + . ID=Physo139072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700007;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 36574 37750 . + . ID=Physo139072;Parent=Physo139072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 36574 36663 . + 0 ID=Physo139072;Parent=Physo139072;rank=1 scaffold_70 . exon 36574 36663 . + . ID=Physo139072.1;Parent=Physo139072;constitutive=1;rank=1 scaffold_70 . CDS 37119 37460 . + 0 ID=Physo139072;Parent=Physo139072;rank=2 scaffold_70 . exon 37119 37460 . + . ID=Physo139072.2;Parent=Physo139072;constitutive=1;rank=2 scaffold_70 . CDS 37523 37750 . + 0 ID=Physo139072;Parent=Physo139072;rank=3 scaffold_70 . exon 37523 37750 . + . ID=Physo139072.3;Parent=Physo139072;constitutive=1;rank=3 scaffold_70 . repeat_region 45238 46233 . ? . description=dust scaffold_70 . repeat_region 47628 47949 . ? . description=trf scaffold_70 . repeat_region 47680 47769 . ? . description=trf scaffold_70 . repeat_region 47805 47910 . ? . description=trf scaffold_70 . repeat_region 47858 47894 . ? . description=trf scaffold_70 . repeat_region 49067 49116 . ? . description=dust scaffold_70 . repeat_region 49239 49559 . ? . description=trf scaffold_70 . repeat_region 49291 49380 . ? . description=trf scaffold_70 . repeat_region 49415 49520 . ? . description=trf scaffold_70 . repeat_region 49468 49504 . ? . description=trf scaffold_70 . repeat_region 49522 49747 . ? . description=trf scaffold_70 ensembl protein_coding_gene 42518 43645 . + . ID=Physo119987;biotype=protein_coding;external_name=estExt_Genewise1.C_700046;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 42518 43645 . + . ID=Physo119987;Parent=Physo119987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 42518 43645 . + . ID=Physo119987.1;Parent=Physo119987;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_70 . CDS 42924 43643 . + 0 ID=Physo119987;Parent=Physo119987;rank=1 scaffold_70 . biological_region 54136 54140 0.999 + . logic_name=eponine scaffold_70 . biological_region 54221 54226 0.999 - . logic_name=eponine scaffold_70 . biological_region 54232 54233 0.999 + . logic_name=eponine scaffold_70 . biological_region 54931 54934 0.999 - . logic_name=eponine scaffold_70 . biological_region 54992 54999 0.999 - . logic_name=eponine scaffold_70 . biological_region 55023 55031 0.999 - . logic_name=eponine scaffold_70 . biological_region 55052 55053 0.999 - . logic_name=eponine scaffold_70 . biological_region 55080 55083 0.999 - . logic_name=eponine scaffold_70 . biological_region 55249 55249 0.999 - . logic_name=eponine scaffold_70 ensembl protein_coding_gene 54468 55391 . + . ID=Physo139074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700009;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 54468 55391 . + . ID=Physo139074;Parent=Physo139074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 54468 55391 . + 0 ID=Physo139074;Parent=Physo139074;rank=1 scaffold_70 . exon 54468 55391 . + . ID=Physo139074.1;Parent=Physo139074;constitutive=1;rank=1 scaffold_70 . repeat_region 59843 59850 . ? . description=dust scaffold_70 . repeat_region 68660 68679 . ? . description=trf scaffold_70 ensembl protein_coding_gene 63645 64571 . + . ID=Physo139075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700010;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 63645 64571 . + . ID=Physo139075;Parent=Physo139075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 63645 63672 . + 0 ID=Physo139075;Parent=Physo139075;rank=1 scaffold_70 . exon 63645 63672 . + . ID=Physo139075.1;Parent=Physo139075;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 63747 63809 . + 0 ID=Physo139075;Parent=Physo139075;rank=2 scaffold_70 . exon 63747 63809 . + . ID=Physo139075.2;Parent=Physo139075;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 63886 64571 . + 0 ID=Physo139075;Parent=Physo139075;rank=3 scaffold_70 . exon 63886 64571 . + . ID=Physo139075.3;Parent=Physo139075;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 ensembl protein_coding_gene 68171 70003 . + . ID=Physo139076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700011;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 68171 70003 . + . ID=Physo139076;Parent=Physo139076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 68171 68401 . + 0 ID=Physo139076;Parent=Physo139076;rank=1 scaffold_70 . exon 68171 68401 . + . ID=Physo139076.1;Parent=Physo139076;constitutive=1;rank=1 scaffold_70 . CDS 68510 68614 . + 0 ID=Physo139076;Parent=Physo139076;rank=2 scaffold_70 . exon 68510 68614 . + . ID=Physo139076.2;Parent=Physo139076;constitutive=1;rank=2 scaffold_70 . CDS 68653 68777 . + 0 ID=Physo139076;Parent=Physo139076;rank=3 scaffold_70 . exon 68653 68777 . + . ID=Physo139076.3;Parent=Physo139076;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_70 . CDS 68878 69079 . + 0 ID=Physo139076;Parent=Physo139076;rank=4 scaffold_70 . exon 68878 69079 . + . ID=Physo139076.4;Parent=Physo139076;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 69171 69632 . + 0 ID=Physo139076;Parent=Physo139076;rank=5 scaffold_70 . exon 69171 70003 . + . ID=Physo139076.5;Parent=Physo139076;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_70 ensembl protein_coding_gene 74763 76691 . + . ID=Physo139077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700012;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 74763 76691 . + . ID=Physo139077;Parent=Physo139077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 74763 76691 . + 0 ID=Physo139077;Parent=Physo139077;rank=1 scaffold_70 . exon 74763 76691 . + . ID=Physo139077.1;Parent=Physo139077;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 79196 79561 . + . ID=Physo139079;biotype=protein_coding;description=Elicitin-like protein SOL7 [Source:UniProtKB/TrEMBL%3BAcc:Q2N052];external_name=estExt_fgenesh1_pg.C_700014;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 79196 79561 . + . ID=Physo139079;Parent=Physo139079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 79196 79561 . + 0 ID=Physo139079;Parent=Physo139079;rank=1 scaffold_70 . exon 79196 79561 . + . ID=Physo139079.1;Parent=Physo139079;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 76814 78183 . - . ID=Physo157918;biotype=protein_coding;external_name=C_scaffold_70000002;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 76814 78183 . - . ID=Physo157918;Parent=Physo157918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 76814 76883 . - 0 ID=Physo157918;Parent=Physo157918;rank=4 scaffold_70 . exon 76814 76883 . - . ID=Physo157918.4;Parent=Physo157918;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 77085 77427 . - 0 ID=Physo157918;Parent=Physo157918;rank=3 scaffold_70 . exon 77085 77427 . - . ID=Physo157918.3;Parent=Physo157918;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_70 . CDS 77502 78066 . - 0 ID=Physo157918;Parent=Physo157918;rank=2 scaffold_70 . exon 77502 78066 . - . ID=Physo157918.2;Parent=Physo157918;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 78115 78183 . - 0 ID=Physo157918;Parent=Physo157918;rank=1 scaffold_70 . exon 78115 78183 . - . ID=Physo157918.1;Parent=Physo157918;constitutive=1;rank=1 scaffold_70 . biological_region 80559 80559 0.999 + . logic_name=eponine scaffold_70 . biological_region 81581 81584 0.999 + . logic_name=eponine scaffold_70 . biological_region 81917 81921 0.999 - . logic_name=eponine scaffold_70 . biological_region 84203 84206 0.999 - . logic_name=eponine scaffold_70 . repeat_region 84522 84547 . ? . description=trf scaffold_70 . biological_region 87111 87114 0.999 + . logic_name=eponine scaffold_70 ensembl protein_coding_gene 79910 80764 . - . ID=Physo139080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700015;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 79910 80764 . - . ID=Physo139080;Parent=Physo139080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 79910 80764 . - 0 ID=Physo139080;Parent=Physo139080;rank=1 scaffold_70 . exon 79910 80764 . - . ID=Physo139080.1;Parent=Physo139080;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 80974 81774 . - . ID=Physo139081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700016;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 80974 81774 . - . ID=Physo139081;Parent=Physo139081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 80974 81774 . - 0 ID=Physo139081;Parent=Physo139081;rank=1 scaffold_70 . exon 80974 81774 . - . ID=Physo139081.1;Parent=Physo139081;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 82567 84288 . - . ID=Physo139082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700017;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 82567 84288 . - . ID=Physo139082;Parent=Physo139082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 82567 84288 . - . ID=Physo139082.1;Parent=Physo139082;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_70 . CDS 82777 84288 . - 0 ID=Physo139082;Parent=Physo139082;rank=1 scaffold_70 ensembl protein_coding_gene 84695 85954 . + . ID=Physo139083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700018;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 84695 85954 . + . ID=Physo139083;Parent=Physo139083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 84695 85954 . + 0 ID=Physo139083;Parent=Physo139083;rank=1 scaffold_70 . exon 84695 85954 . + . ID=Physo139083.1;Parent=Physo139083;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 87077 87853 . - . ID=Physo139084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700019;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 87077 87853 . - . ID=Physo139084;Parent=Physo139084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 87077 87853 . - 0 ID=Physo139084;Parent=Physo139084;rank=1 scaffold_70 . exon 87077 87853 . - . ID=Physo139084.1;Parent=Physo139084;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 88077 88875 . + . ID=Physo139085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700020;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 88077 88875 . + . ID=Physo139085;Parent=Physo139085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 88077 88112 . + . ID=Physo139085.1;Parent=Physo139085;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_70 . CDS 88100 88112 . + 0 ID=Physo139085;Parent=Physo139085;rank=1 scaffold_70 . CDS 88213 88259 . + 0 ID=Physo139085;Parent=Physo139085;rank=2 scaffold_70 . exon 88213 88259 . + . ID=Physo139085.2;Parent=Physo139085;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 88366 88456 . + 0 ID=Physo139085;Parent=Physo139085;rank=3 scaffold_70 . exon 88366 88456 . + . ID=Physo139085.3;Parent=Physo139085;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . CDS 88616 88806 . + 0 ID=Physo139085;Parent=Physo139085;rank=4 scaffold_70 . exon 88616 88875 . + . ID=Physo139085.4;Parent=Physo139085;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_70 . repeat_region 94685 94760 . ? . description=dust scaffold_70 ensembl protein_coding_gene 89978 90978 . + . ID=Physo139086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700021;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 89978 90978 . + . ID=Physo139086;Parent=Physo139086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 89978 90936 . + 0 ID=Physo139086;Parent=Physo139086;rank=1 scaffold_70 . exon 89978 90936 . + . ID=Physo139086.1;Parent=Physo139086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 90969 90978 . + 0 ID=Physo139086;Parent=Physo139086;rank=2 scaffold_70 . exon 90969 90978 . + . ID=Physo139086.2;Parent=Physo139086;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 ensembl protein_coding_gene 94243 98088 . + . ID=Physo139087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700022;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 94243 98088 . + . ID=Physo139087;Parent=Physo139087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 94243 98088 . + 0 ID=Physo139087;Parent=Physo139087;rank=1 scaffold_70 . exon 94243 98088 . + . ID=Physo139087.1;Parent=Physo139087;constitutive=1;rank=1 scaffold_70 . biological_region 101423 101430 0.999 + . logic_name=eponine scaffold_70 . biological_region 102769 102769 0.999 + . logic_name=eponine scaffold_70 . biological_region 102805 102805 0.999 - . logic_name=eponine scaffold_70 . biological_region 103344 103350 0.999 + . logic_name=eponine scaffold_70 . repeat_region 104411 104434 . ? . description=trf scaffold_70 . biological_region 106165 106171 0.999 - . logic_name=eponine scaffold_70 . biological_region 106178 106181 0.999 + . logic_name=eponine scaffold_70 . biological_region 106282 106287 0.999 + . logic_name=eponine scaffold_70 . repeat_region 106341 106489 . ? . description=trf scaffold_70 . biological_region 106342 106348 0.999 + . logic_name=eponine scaffold_70 . repeat_region 106345 106504 . ? . description=trf scaffold_70 . biological_region 106358 106362 0.999 - . logic_name=eponine scaffold_70 . repeat_region 106359 106538 . ? . description=trf scaffold_70 . biological_region 106382 106385 0.999 + . logic_name=eponine scaffold_70 . biological_region 106412 106416 0.999 + . logic_name=eponine scaffold_70 . biological_region 106444 106444 0.999 + . logic_name=eponine scaffold_70 . biological_region 106449 106451 0.999 - . logic_name=eponine scaffold_70 . biological_region 106580 106583 0.999 - . logic_name=eponine scaffold_70 . repeat_region 106976 106997 . ? . description=trf scaffold_70 . biological_region 107354 107359 0.999 - . logic_name=eponine scaffold_70 . repeat_region 108551 108591 . ? . description=trf scaffold_70 . biological_region 108969 108975 0.999 - . logic_name=eponine scaffold_70 ensembl protein_coding_gene 106097 108604 . + . ID=Physo109184;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_700001;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 106097 108604 . + . ID=Physo109184;Parent=Physo109184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 106097 106296 . + 0 ID=Physo109184;Parent=Physo109184;rank=1 scaffold_70 . exon 106097 106296 . + . ID=Physo109184.1;Parent=Physo109184;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 106360 106912 . + 0 ID=Physo109184;Parent=Physo109184;rank=2 scaffold_70 . exon 106360 106912 . + . ID=Physo109184.2;Parent=Physo109184;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 107597 108604 . + 0 ID=Physo109184;Parent=Physo109184;rank=3 scaffold_70 . exon 107597 108604 . + . ID=Physo109184.3;Parent=Physo109184;constitutive=1;rank=3 scaffold_70 ensembl protein_coding_gene 99855 100965 . - . ID=Physo119995;biotype=protein_coding;external_name=estExt_Genewise1.C_700054;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 99855 100965 . - . ID=Physo119995;Parent=Physo119995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 99855 100502 . - 0 ID=Physo119995;Parent=Physo119995;rank=4 scaffold_70 . exon 99855 100502 . - . ID=Physo119995.4;Parent=Physo119995;constitutive=1;rank=4 scaffold_70 . CDS 100571 100636 . - 0 ID=Physo119995;Parent=Physo119995;rank=3 scaffold_70 . exon 100571 100636 . - . ID=Physo119995.3;Parent=Physo119995;constitutive=1;rank=3 scaffold_70 . CDS 100705 100754 . - 0 ID=Physo119995;Parent=Physo119995;rank=2 scaffold_70 . exon 100705 100754 . - . ID=Physo119995.2;Parent=Physo119995;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 100848 100935 . - 0 ID=Physo119995;Parent=Physo119995;rank=1 scaffold_70 . exon 100848 100965 . - . ID=Physo119995.1;Parent=Physo119995;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_70 ensembl protein_coding_gene 101460 104378 . + . ID=Physo139089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700024;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 101460 104378 . + . ID=Physo139089;Parent=Physo139089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 101460 101567 . + . ID=Physo139089.1;Parent=Physo139089;constitutive=1;ensembl_phase=-1;rank=1 scaffold_70 . CDS 101520 101567 . + 0 ID=Physo139089;Parent=Physo139089;rank=1 scaffold_70 . CDS 101675 101983 . + 0 ID=Physo139089;Parent=Physo139089;rank=2 scaffold_70 . exon 101675 101983 . + . ID=Physo139089.2;Parent=Physo139089;constitutive=1;rank=2 scaffold_70 . CDS 102079 102322 . + 0 ID=Physo139089;Parent=Physo139089;rank=3 scaffold_70 . exon 102079 102322 . + . ID=Physo139089.3;Parent=Physo139089;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . CDS 102409 102569 . + 0 ID=Physo139089;Parent=Physo139089;rank=4 scaffold_70 . exon 102409 102569 . + . ID=Physo139089.4;Parent=Physo139089;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 102640 102690 . + 0 ID=Physo139089;Parent=Physo139089;rank=5 scaffold_70 . exon 102640 102690 . + . ID=Physo139089.5;Parent=Physo139089;constitutive=1;rank=5 scaffold_70 . CDS 102745 102770 . + 0 ID=Physo139089;Parent=Physo139089;rank=6 scaffold_70 . exon 102745 102770 . + . ID=Physo139089.6;Parent=Physo139089;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_70 . CDS 102848 102873 . + 0 ID=Physo139089;Parent=Physo139089;rank=7 scaffold_70 . exon 102848 102873 . + . ID=Physo139089.7;Parent=Physo139089;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_70 . CDS 103074 103579 . + 0 ID=Physo139089;Parent=Physo139089;rank=8 scaffold_70 . exon 103074 103579 . + . ID=Physo139089.8;Parent=Physo139089;constitutive=1;ensembl_phase=1;rank=8 scaffold_70 . CDS 103655 103828 . + 0 ID=Physo139089;Parent=Physo139089;rank=9 scaffold_70 . exon 103655 103828 . + . ID=Physo139089.9;Parent=Physo139089;constitutive=1;rank=9 scaffold_70 . CDS 103910 103965 . + 0 ID=Physo139089;Parent=Physo139089;rank=10 scaffold_70 . exon 103910 103965 . + . ID=Physo139089.10;Parent=Physo139089;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_70 . CDS 104030 104099 . + 0 ID=Physo139089;Parent=Physo139089;rank=11 scaffold_70 . exon 104030 104099 . + . ID=Physo139089.11;Parent=Physo139089;constitutive=1;ensembl_phase=2;rank=11 scaffold_70 . CDS 104186 104227 . + 0 ID=Physo139089;Parent=Physo139089;rank=12 scaffold_70 . exon 104186 104227 . + . ID=Physo139089.12;Parent=Physo139089;constitutive=1;rank=12 scaffold_70 . CDS 104295 104378 . + 0 ID=Physo139089;Parent=Physo139089;rank=13 scaffold_70 . exon 104295 104378 . + . ID=Physo139089.13;Parent=Physo139089;constitutive=1;rank=13 scaffold_70 ensembl protein_coding_gene 104948 105963 . + . ID=Physo139090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700025;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 104948 105963 . + . ID=Physo139090;Parent=Physo139090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 104948 105430 . + 0 ID=Physo139090;Parent=Physo139090;rank=1 scaffold_70 . exon 104948 105430 . + . ID=Physo139090.1;Parent=Physo139090;constitutive=1;rank=1 scaffold_70 . CDS 105490 105545 . + 0 ID=Physo139090;Parent=Physo139090;rank=2 scaffold_70 . exon 105490 105545 . + . ID=Physo139090.2;Parent=Physo139090;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 105620 105689 . + 0 ID=Physo139090;Parent=Physo139090;rank=3 scaffold_70 . exon 105620 105689 . + . ID=Physo139090.3;Parent=Physo139090;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 105880 105963 . + 0 ID=Physo139090;Parent=Physo139090;rank=4 scaffold_70 . exon 105880 105963 . + . ID=Physo139090.4;Parent=Physo139090;constitutive=1;rank=4 scaffold_70 ensembl protein_coding_gene 108821 111745 . - . ID=Physo139092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700027;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 108821 111745 . - . ID=Physo139092;Parent=Physo139092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 108821 111745 . - 0 ID=Physo139092;Parent=Physo139092;rank=1 scaffold_70 . exon 108821 111745 . - . ID=Physo139092.1;Parent=Physo139092;constitutive=1;rank=1 scaffold_70 . repeat_region 115104 115121 . ? . description=dust scaffold_70 . repeat_region 118586 118595 . ? . description=dust scaffold_70 ensembl protein_coding_gene 112900 114294 . + . ID=Physo109185;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_700002;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 112900 114294 . + . ID=Physo109185;Parent=Physo109185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 112900 113003 . + 0 ID=Physo109185;Parent=Physo109185;rank=1 scaffold_70 . exon 112900 113003 . + . ID=Physo109185.1;Parent=Physo109185;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 113033 113130 . + 0 ID=Physo109185;Parent=Physo109185;rank=2 scaffold_70 . exon 113033 113130 . + . ID=Physo109185.2;Parent=Physo109185;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 113219 113313 . + 0 ID=Physo109185;Parent=Physo109185;rank=3 scaffold_70 . exon 113219 113313 . + . ID=Physo109185.3;Parent=Physo109185;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 113361 113534 . + 0 ID=Physo109185;Parent=Physo109185;rank=4 scaffold_70 . exon 113361 113534 . + . ID=Physo109185.4;Parent=Physo109185;constitutive=1;rank=4 scaffold_70 . CDS 113628 113782 . + 0 ID=Physo109185;Parent=Physo109185;rank=5 scaffold_70 . exon 113628 113782 . + . ID=Physo109185.5;Parent=Physo109185;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_70 . CDS 113879 113920 . + 0 ID=Physo109185;Parent=Physo109185;rank=6 scaffold_70 . exon 113879 113920 . + . ID=Physo109185.6;Parent=Physo109185;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_70 . CDS 113996 114129 . + 0 ID=Physo109185;Parent=Physo109185;rank=7 scaffold_70 . exon 113996 114129 . + . ID=Physo109185.7;Parent=Physo109185;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_70 . CDS 114215 114294 . + 0 ID=Physo109185;Parent=Physo109185;rank=8 scaffold_70 . exon 114215 114294 . + . ID=Physo109185.8;Parent=Physo109185;constitutive=1;ensembl_phase=1;rank=8 scaffold_70 ensembl protein_coding_gene 115421 118707 . + . ID=Physo139094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700029;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 115421 118707 . + . ID=Physo139094;Parent=Physo139094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 115421 116791 . + 0 ID=Physo139094;Parent=Physo139094;rank=1 scaffold_70 . exon 115421 116791 . + . ID=Physo139094.1;Parent=Physo139094;constitutive=1;rank=1 scaffold_70 . CDS 116887 116972 . + 0 ID=Physo139094;Parent=Physo139094;rank=2 scaffold_70 . exon 116887 116972 . + . ID=Physo139094.2;Parent=Physo139094;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 117050 117128 . + 0 ID=Physo139094;Parent=Physo139094;rank=3 scaffold_70 . exon 117050 117128 . + . ID=Physo139094.3;Parent=Physo139094;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 117192 117262 . + 0 ID=Physo139094;Parent=Physo139094;rank=4 scaffold_70 . exon 117192 117262 . + . ID=Physo139094.4;Parent=Physo139094;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_70 . CDS 117357 117405 . + 0 ID=Physo139094;Parent=Physo139094;rank=5 scaffold_70 . exon 117357 117405 . + . ID=Physo139094.5;Parent=Physo139094;constitutive=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 117488 118561 . + 0 ID=Physo139094;Parent=Physo139094;rank=6 scaffold_70 . exon 117488 118707 . + . ID=Physo139094.6;Parent=Physo139094;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_70 ensembl protein_coding_gene 118772 119988 . - . ID=Physo139095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700030;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 118772 119988 . - . ID=Physo139095;Parent=Physo139095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 118772 119278 . - 0 ID=Physo139095;Parent=Physo139095;rank=6 scaffold_70 . exon 118772 119278 . - . ID=Physo139095.6;Parent=Physo139095;constitutive=1;rank=6 scaffold_70 . CDS 119334 119399 . - 0 ID=Physo139095;Parent=Physo139095;rank=5 scaffold_70 . exon 119334 119399 . - . ID=Physo139095.5;Parent=Physo139095;constitutive=1;rank=5 scaffold_70 . CDS 119485 119541 . - 0 ID=Physo139095;Parent=Physo139095;rank=4 scaffold_70 . CDS 119628 119687 . - 0 ID=Physo139095;Parent=Physo139095;rank=3 scaffold_70 . CDS 119768 119877 . - 0 ID=Physo139095;Parent=Physo139095;rank=2 scaffold_70 . CDS 119973 119988 . - 0 ID=Physo139095;Parent=Physo139095;rank=1 scaffold_70 . biological_region 124019 124026 0.999 - . logic_name=eponine scaffold_70 . biological_region 125687 125690 0.999 + . logic_name=eponine scaffold_70 . biological_region 127368 127369 0.999 + . logic_name=eponine scaffold_70 . repeat_region 127908 128213 . - . description=GypsyPi-1c_LTR scaffold_70 . biological_region 128392 128393 0.999 - . logic_name=eponine scaffold_70 . exon 119485 119541 . - . ID=Physo139095.4;Parent=Physo139095;constitutive=1;rank=4 scaffold_70 . exon 119628 119687 . - . ID=Physo139095.3;Parent=Physo139095;constitutive=1;rank=3 scaffold_70 . exon 119768 119877 . - . ID=Physo139095.2;Parent=Physo139095;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . exon 119973 119988 . - . ID=Physo139095.1;Parent=Physo139095;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 120620 125107 . - . ID=Physo139096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700031;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 120620 125107 . - . ID=Physo139096;Parent=Physo139096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 120620 121012 . - . ID=Physo139096.8;Parent=Physo139096;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_70 . CDS 120776 121012 . - 0 ID=Physo139096;Parent=Physo139096;rank=8 scaffold_70 . CDS 121193 121547 . - 0 ID=Physo139096;Parent=Physo139096;rank=7 scaffold_70 . exon 121193 121547 . - . ID=Physo139096.7;Parent=Physo139096;constitutive=1;ensembl_phase=2;rank=7 scaffold_70 . CDS 121660 121943 . - 0 ID=Physo139096;Parent=Physo139096;rank=6 scaffold_70 . exon 121660 121943 . - . ID=Physo139096.6;Parent=Physo139096;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_70 . CDS 121963 121995 . - 0 ID=Physo139096;Parent=Physo139096;rank=5 scaffold_70 . exon 121963 121995 . - . ID=Physo139096.5;Parent=Physo139096;constitutive=1;rank=5 scaffold_70 . CDS 122057 122536 . - 0 ID=Physo139096;Parent=Physo139096;rank=4 scaffold_70 . exon 122057 122536 . - . ID=Physo139096.4;Parent=Physo139096;constitutive=1;rank=4 scaffold_70 . CDS 122584 123260 . - 0 ID=Physo139096;Parent=Physo139096;rank=3 scaffold_70 . exon 122584 123260 . - . ID=Physo139096.3;Parent=Physo139096;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 123841 123964 . - 0 ID=Physo139096;Parent=Physo139096;rank=2 scaffold_70 . exon 123841 123964 . - . ID=Physo139096.2;Parent=Physo139096;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 124091 125107 . - 0 ID=Physo139096;Parent=Physo139096;rank=1 scaffold_70 . exon 124091 125107 . - . ID=Physo139096.1;Parent=Physo139096;constitutive=1;rank=1 scaffold_70 . repeat_region 129436 129513 . - . description=GypsyPi-1c_I-int scaffold_70 . repeat_region 130346 130695 . - . description=GypsyPi-1c_I-int scaffold_70 . repeat_region 130379 130630 . ? . description=trf scaffold_70 . repeat_region 130873 132069 . - . description=GypsyPi-1c_I-int scaffold_70 . repeat_region 131107 131156 . ? . description=trf scaffold_70 . repeat_region 132068 132260 . - . description=SSU-rRNA_Tps scaffold_70 . repeat_region 132262 132757 . - . description=GypsyPi-1c_I-int scaffold_70 . repeat_region 134725 134786 . ? . description=dust scaffold_70 ensembl protein_coding_gene 136480 137096 . - . ID=Physo120016;biotype=protein_coding;external_name=estExt_Genewise1.C_700075;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 136480 137096 . - . ID=Physo120016;Parent=Physo120016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 136480 136953 . - 0 ID=Physo120016;Parent=Physo120016;rank=2 scaffold_70 . exon 136480 136953 . - . ID=Physo120016.2;Parent=Physo120016;constitutive=1;rank=2 scaffold_70 . CDS 137052 137096 . - 0 ID=Physo120016;Parent=Physo120016;rank=1 scaffold_70 . exon 137052 137096 . - . ID=Physo120016.1;Parent=Physo120016;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 134791 136260 . + . ID=Physo139097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700032;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 134791 136260 . + . ID=Physo139097;Parent=Physo139097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 134791 135019 . + 0 ID=Physo139097;Parent=Physo139097;rank=1 scaffold_70 . exon 134791 135019 . + . ID=Physo139097.1;Parent=Physo139097;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 135118 135259 . + 0 ID=Physo139097;Parent=Physo139097;rank=2 scaffold_70 . exon 135118 135259 . + . ID=Physo139097.2;Parent=Physo139097;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 135357 135609 . + 0 ID=Physo139097;Parent=Physo139097;rank=3 scaffold_70 . exon 135357 135609 . + . ID=Physo139097.3;Parent=Physo139097;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 135694 136260 . + 0 ID=Physo139097;Parent=Physo139097;rank=4 scaffold_70 . exon 135694 136260 . + . ID=Physo139097.4;Parent=Physo139097;constitutive=1;rank=4 scaffold_70 ensembl protein_coding_gene 137441 139121 . + . ID=Physo139099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700034;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 137441 139121 . + . ID=Physo139099;Parent=Physo139099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 137441 137540 . + 0 ID=Physo139099;Parent=Physo139099;rank=1 scaffold_70 . exon 137441 137540 . + . ID=Physo139099.1;Parent=Physo139099;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 137635 137773 . + 0 ID=Physo139099;Parent=Physo139099;rank=2 scaffold_70 . exon 137635 137773 . + . ID=Physo139099.2;Parent=Physo139099;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 137851 138505 . + 0 ID=Physo139099;Parent=Physo139099;rank=3 scaffold_70 . exon 137851 138505 . + . ID=Physo139099.3;Parent=Physo139099;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 138820 138861 . + 0 ID=Physo139099;Parent=Physo139099;rank=4 scaffold_70 . exon 138820 138861 . + . ID=Physo139099.4;Parent=Physo139099;constitutive=1;rank=4 scaffold_70 . CDS 138942 139121 . + 0 ID=Physo139099;Parent=Physo139099;rank=5 scaffold_70 . exon 138942 139121 . + . ID=Physo139099.5;Parent=Physo139099;constitutive=1;rank=5 scaffold_70 ensembl protein_coding_gene 139166 140917 . - . ID=Physo157928;biotype=protein_coding;external_name=C_scaffold_70000012;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 139166 140917 . - . ID=Physo157928;Parent=Physo157928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 139166 139182 . - 0 ID=Physo157928;Parent=Physo157928;rank=7 scaffold_70 . exon 139166 139182 . - . ID=Physo157928.7;Parent=Physo157928;constitutive=1;ensembl_phase=1;rank=7 scaffold_70 . CDS 139273 139442 . - 0 ID=Physo157928;Parent=Physo157928;rank=6 scaffold_70 . CDS 139518 139713 . - 0 ID=Physo157928;Parent=Physo157928;rank=5 scaffold_70 . CDS 140152 140275 . - 0 ID=Physo157928;Parent=Physo157928;rank=4 scaffold_70 . CDS 140372 140484 . - 0 ID=Physo157928;Parent=Physo157928;rank=3 scaffold_70 . CDS 140521 140808 . - 0 ID=Physo157928;Parent=Physo157928;rank=2 scaffold_70 . CDS 140893 140917 . - 0 ID=Physo157928;Parent=Physo157928;rank=1 scaffold_70 . biological_region 141315 141318 0.999 - . logic_name=eponine scaffold_70 . exon 139273 139442 . - . ID=Physo157928.6;Parent=Physo157928;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_70 . exon 139518 139713 . - . ID=Physo157928.5;Parent=Physo157928;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_70 . exon 140152 140275 . - . ID=Physo157928.4;Parent=Physo157928;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_70 . exon 140372 140484 . - . ID=Physo157928.3;Parent=Physo157928;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . exon 140521 140808 . - . ID=Physo157928.2;Parent=Physo157928;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_70 . exon 140893 140917 . - . ID=Physo157928.1;Parent=Physo157928;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . repeat_region 151016 151033 . ? . description=dust scaffold_70 . repeat_region 151674 151714 . ? . description=dust scaffold_70 ensembl protein_coding_gene 155319 157564 . - . ID=Physo139103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700038;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 155319 157564 . - . ID=Physo139103;Parent=Physo139103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 155319 155435 . - 0 ID=Physo139103;Parent=Physo139103;rank=6 scaffold_70 . exon 155319 155435 . - . ID=Physo139103.6;Parent=Physo139103;constitutive=1;rank=6 scaffold_70 . CDS 155521 156039 . - 0 ID=Physo139103;Parent=Physo139103;rank=5 scaffold_70 . exon 155521 156039 . - . ID=Physo139103.5;Parent=Physo139103;constitutive=1;rank=5 scaffold_70 . CDS 156123 156498 . - 0 ID=Physo139103;Parent=Physo139103;rank=4 scaffold_70 . exon 156123 156498 . - . ID=Physo139103.4;Parent=Physo139103;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 156631 157124 . - 0 ID=Physo139103;Parent=Physo139103;rank=3 scaffold_70 . exon 156631 157124 . - . ID=Physo139103.3;Parent=Physo139103;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_70 . CDS 157206 157350 . - 0 ID=Physo139103;Parent=Physo139103;rank=2 scaffold_70 . exon 157206 157350 . - . ID=Physo139103.2;Parent=Physo139103;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 157419 157564 . - 0 ID=Physo139103;Parent=Physo139103;rank=1 scaffold_70 . exon 157419 157564 . - . ID=Physo139103.1;Parent=Physo139103;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 149758 150845 . - . ID=Physo157930;biotype=protein_coding;external_name=C_scaffold_70000014;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 149758 150845 . - . ID=Physo157930;Parent=Physo157930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 149758 150168 . - 0 ID=Physo157930;Parent=Physo157930;rank=5 scaffold_70 . exon 149758 150168 . - . ID=Physo157930.5;Parent=Physo157930;constitutive=1;rank=5 scaffold_70 . CDS 150190 150255 . - 0 ID=Physo157930;Parent=Physo157930;rank=4 scaffold_70 . exon 150190 150255 . - . ID=Physo157930.4;Parent=Physo157930;constitutive=1;rank=4 scaffold_70 . CDS 150324 150496 . - 0 ID=Physo157930;Parent=Physo157930;rank=3 scaffold_70 . exon 150324 150496 . - . ID=Physo157930.3;Parent=Physo157930;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 150608 150698 . - 0 ID=Physo157930;Parent=Physo157930;rank=2 scaffold_70 . exon 150608 150698 . - . ID=Physo157930.2;Parent=Physo157930;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 150774 150845 . - 0 ID=Physo157930;Parent=Physo157930;rank=1 scaffold_70 . exon 150774 150845 . - . ID=Physo157930.1;Parent=Physo157930;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 151224 154583 . - . ID=Physo157932;biotype=protein_coding;external_name=C_scaffold_70000016;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 151224 154583 . - . ID=Physo157932;Parent=Physo157932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 151224 151456 . - 0 ID=Physo157932;Parent=Physo157932;rank=15 scaffold_70 . exon 151224 151456 . - . ID=Physo157932.15;Parent=Physo157932;constitutive=1;ensembl_phase=1;rank=15 scaffold_70 . CDS 151541 151631 . - 0 ID=Physo157932;Parent=Physo157932;rank=14 scaffold_70 . exon 151541 151631 . - . ID=Physo157932.14;Parent=Physo157932;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_70 . CDS 151747 151763 . - 0 ID=Physo157932;Parent=Physo157932;rank=13 scaffold_70 . exon 151747 151763 . - . ID=Physo157932.13;Parent=Physo157932;constitutive=1;ensembl_phase=1;rank=13 scaffold_70 . CDS 152046 152124 . - 0 ID=Physo157932;Parent=Physo157932;rank=12 scaffold_70 . exon 152046 152124 . - . ID=Physo157932.12;Parent=Physo157932;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_70 . CDS 152203 152289 . - 0 ID=Physo157932;Parent=Physo157932;rank=11 scaffold_70 . exon 152203 152289 . - . ID=Physo157932.11;Parent=Physo157932;constitutive=1;rank=11 scaffold_70 . CDS 152360 152469 . - 0 ID=Physo157932;Parent=Physo157932;rank=10 scaffold_70 . exon 152360 152469 . - . ID=Physo157932.10;Parent=Physo157932;constitutive=1;ensembl_phase=1;rank=10 scaffold_70 . CDS 152531 152692 . - 0 ID=Physo157932;Parent=Physo157932;rank=9 scaffold_70 . exon 152531 152692 . - . ID=Physo157932.9;Parent=Physo157932;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_70 . CDS 152762 152860 . - 0 ID=Physo157932;Parent=Physo157932;rank=8 scaffold_70 . exon 152762 152860 . - . ID=Physo157932.8;Parent=Physo157932;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_70 . CDS 152930 152978 . - 0 ID=Physo157932;Parent=Physo157932;rank=7 scaffold_70 . exon 152930 152978 . - . ID=Physo157932.7;Parent=Physo157932;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_70 . CDS 153051 153151 . - 0 ID=Physo157932;Parent=Physo157932;rank=6 scaffold_70 . exon 153051 153151 . - . ID=Physo157932.6;Parent=Physo157932;constitutive=1;ensembl_phase=1;rank=6 scaffold_70 . CDS 153376 153514 . - 0 ID=Physo157932;Parent=Physo157932;rank=5 scaffold_70 . exon 153376 153514 . - . ID=Physo157932.5;Parent=Physo157932;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_70 . CDS 153597 153889 . - 0 ID=Physo157932;Parent=Physo157932;rank=4 scaffold_70 . exon 153597 153889 . - . ID=Physo157932.4;Parent=Physo157932;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 153959 154051 . - 0 ID=Physo157932;Parent=Physo157932;rank=3 scaffold_70 . exon 153959 154051 . - . ID=Physo157932.3;Parent=Physo157932;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 154250 154402 . - 0 ID=Physo157932;Parent=Physo157932;rank=2 scaffold_70 . exon 154250 154402 . - . ID=Physo157932.2;Parent=Physo157932;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 154427 154583 . - 0 ID=Physo157932;Parent=Physo157932;rank=1 scaffold_70 . exon 154427 154583 . - . ID=Physo157932.1;Parent=Physo157932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . biological_region 161197 161201 0.999 - . logic_name=eponine scaffold_70 . repeat_region 163185 163214 . ? . description=trf scaffold_70 . biological_region 163902 163902 0.999 + . logic_name=eponine scaffold_70 . biological_region 165138 165142 0.999 + . logic_name=eponine scaffold_70 ensembl protein_coding_gene 160991 162652 . + . ID=Physo139104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700039;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 160991 162652 . + . ID=Physo139104;Parent=Physo139104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 160991 161381 . + 0 ID=Physo139104;Parent=Physo139104;rank=1 scaffold_70 . exon 160991 161381 . + . ID=Physo139104.1;Parent=Physo139104;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 161447 161634 . + 0 ID=Physo139104;Parent=Physo139104;rank=2 scaffold_70 . exon 161447 161634 . + . ID=Physo139104.2;Parent=Physo139104;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 161705 162652 . + 0 ID=Physo139104;Parent=Physo139104;rank=3 scaffold_70 . exon 161705 162652 . + . ID=Physo139104.3;Parent=Physo139104;constitutive=1;rank=3 scaffold_70 ensembl protein_coding_gene 162784 165021 . - . ID=Physo139105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700040;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 162784 165021 . - . ID=Physo139105;Parent=Physo139105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 162784 162894 . - 0 ID=Physo139105;Parent=Physo139105;rank=7 scaffold_70 . exon 162784 162894 . - . ID=Physo139105.7;Parent=Physo139105;constitutive=1;rank=7 scaffold_70 . CDS 162983 163173 . - 0 ID=Physo139105;Parent=Physo139105;rank=6 scaffold_70 . exon 162983 163173 . - . ID=Physo139105.6;Parent=Physo139105;constitutive=1;ensembl_phase=1;rank=6 scaffold_70 . CDS 163276 163548 . - 0 ID=Physo139105;Parent=Physo139105;rank=5 scaffold_70 . exon 163276 163548 . - . ID=Physo139105.5;Parent=Physo139105;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_70 . CDS 163679 163692 . - 0 ID=Physo139105;Parent=Physo139105;rank=4 scaffold_70 . exon 163679 163692 . - . ID=Physo139105.4;Parent=Physo139105;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 163734 164449 . - 0 ID=Physo139105;Parent=Physo139105;rank=3 scaffold_70 . exon 163734 164449 . - . ID=Physo139105.3;Parent=Physo139105;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_70 . CDS 164526 164701 . - 0 ID=Physo139105;Parent=Physo139105;rank=2 scaffold_70 . exon 164526 164701 . - . ID=Physo139105.2;Parent=Physo139105;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 164772 165021 . - 0 ID=Physo139105;Parent=Physo139105;rank=1 scaffold_70 . exon 164772 165021 . - . ID=Physo139105.1;Parent=Physo139105;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 166067 166453 . - . ID=Physo139106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700041;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 166067 166453 . - . ID=Physo139106;Parent=Physo139106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 166067 166186 . - 0 ID=Physo139106;Parent=Physo139106;rank=2 scaffold_70 . exon 166067 166186 . - . ID=Physo139106.2;Parent=Physo139106;constitutive=1;rank=2 scaffold_70 . CDS 166265 166453 . - 0 ID=Physo139106;Parent=Physo139106;rank=1 scaffold_70 . exon 166265 166453 . - . ID=Physo139106.1;Parent=Physo139106;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 166836 167286 . - . ID=Physo139107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700042;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 166836 167286 . - . ID=Physo139107;Parent=Physo139107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 166836 166970 . - . ID=Physo139107.2;Parent=Physo139107;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_70 . CDS 166839 166970 . - 0 ID=Physo139107;Parent=Physo139107;rank=2 scaffold_70 . CDS 167072 167260 . - 0 ID=Physo139107;Parent=Physo139107;rank=1 scaffold_70 . exon 167072 167286 . - . ID=Physo139107.1;Parent=Physo139107;constitutive=1;ensembl_phase=-1;rank=1 scaffold_70 ensembl protein_coding_gene 167715 168433 . - . ID=Physo139108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700043;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 167715 168433 . - . ID=Physo139108;Parent=Physo139108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 167715 168370 . - . ID=Physo139108.2;Parent=Physo139108;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_70 . CDS 168014 168334 . - 0 ID=Physo139108;Parent=Physo139108;rank=1 scaffold_70 . exon 168429 168433 . - . ID=Physo139108.1;Parent=Physo139108;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_70 . repeat_region 173558 173596 . ? . description=dust scaffold_70 . repeat_region 174315 174328 . ? . description=dust scaffold_70 ensembl protein_coding_gene 171331 172903 . + . ID=Physo139109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700044;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 171331 172903 . + . ID=Physo139109;Parent=Physo139109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 171331 171647 . + 0 ID=Physo139109;Parent=Physo139109;rank=1 scaffold_70 . exon 171331 171647 . + . ID=Physo139109.1;Parent=Physo139109;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 172376 172583 . + 0 ID=Physo139109;Parent=Physo139109;rank=2 scaffold_70 . exon 172376 172583 . + . ID=Physo139109.2;Parent=Physo139109;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 172685 172816 . + 0 ID=Physo139109;Parent=Physo139109;rank=3 scaffold_70 . exon 172685 172903 . + . ID=Physo139109.3;Parent=Physo139109;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_70 ensembl protein_coding_gene 174310 177628 . + . ID=Physo139110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700045;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 174310 177628 . + . ID=Physo139110;Parent=Physo139110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 174310 174327 . + 0 ID=Physo139110;Parent=Physo139110;rank=1 scaffold_70 . exon 174310 174327 . + . ID=Physo139110.1;Parent=Physo139110;constitutive=1;rank=1 scaffold_70 . CDS 174354 174989 . + 0 ID=Physo139110;Parent=Physo139110;rank=2 scaffold_70 . exon 174354 174989 . + . ID=Physo139110.2;Parent=Physo139110;constitutive=1;rank=2 scaffold_70 . CDS 175062 175308 . + 0 ID=Physo139110;Parent=Physo139110;rank=3 scaffold_70 . exon 175062 175308 . + . ID=Physo139110.3;Parent=Physo139110;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . CDS 175426 175874 . + 0 ID=Physo139110;Parent=Physo139110;rank=4 scaffold_70 . exon 175426 175874 . + . ID=Physo139110.4;Parent=Physo139110;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 175908 176531 . + 0 ID=Physo139110;Parent=Physo139110;rank=5 scaffold_70 . exon 175908 176531 . + . ID=Physo139110.5;Parent=Physo139110;constitutive=1;rank=5 scaffold_70 . CDS 176633 177628 . + 0 ID=Physo139110;Parent=Physo139110;rank=6 scaffold_70 . exon 176633 177628 . + . ID=Physo139110.6;Parent=Physo139110;constitutive=1;rank=6 scaffold_70 . biological_region 179254 179254 0.999 - . logic_name=eponine scaffold_70 . biological_region 179728 179734 0.999 - . logic_name=eponine scaffold_70 . biological_region 179750 179750 0.999 - . logic_name=eponine scaffold_70 . biological_region 179802 179805 0.999 - . logic_name=eponine scaffold_70 . biological_region 179820 179826 0.999 + . logic_name=eponine scaffold_70 . repeat_region 180330 180363 . ? . description=trf scaffold_70 . biological_region 182965 182965 0.999 + . logic_name=eponine scaffold_70 . biological_region 182976 182980 0.999 + . logic_name=eponine scaffold_70 . repeat_region 184811 184951 . ? . description=trf scaffold_70 . biological_region 185151 185155 0.999 - . logic_name=eponine scaffold_70 . biological_region 185166 185166 0.999 - . logic_name=eponine scaffold_70 ensembl protein_coding_gene 184800 185230 . + . ID=Physo139111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700046;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 184800 185230 . + . ID=Physo139111;Parent=Physo139111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 184800 185030 . + 0 ID=Physo139111;Parent=Physo139111;rank=1 scaffold_70 . exon 184800 185030 . + . ID=Physo139111.1;Parent=Physo139111;constitutive=1;rank=1 scaffold_70 . CDS 185132 185230 . + 0 ID=Physo139111;Parent=Physo139111;rank=2 scaffold_70 . exon 185132 185230 . + . ID=Physo139111.2;Parent=Physo139111;constitutive=1;rank=2 scaffold_70 ensembl protein_coding_gene 186999 187388 . + . ID=Physo139112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700047;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 186999 187388 . + . ID=Physo139112;Parent=Physo139112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 186999 187187 . + 0 ID=Physo139112;Parent=Physo139112;rank=1 scaffold_70 . exon 186999 187187 . + . ID=Physo139112.1;Parent=Physo139112;constitutive=1;rank=1 scaffold_70 . CDS 187275 187388 . + 0 ID=Physo139112;Parent=Physo139112;rank=2 scaffold_70 . exon 187275 187388 . + . ID=Physo139112.2;Parent=Physo139112;constitutive=1;rank=2 scaffold_70 ensembl protein_coding_gene 188347 189413 . + . ID=Physo139113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700048;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 188347 189413 . + . ID=Physo139113;Parent=Physo139113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 188347 188638 . + 0 ID=Physo139113;Parent=Physo139113;rank=1 scaffold_70 . exon 188347 188638 . + . ID=Physo139113.1;Parent=Physo139113;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 188750 189269 . + 0 ID=Physo139113;Parent=Physo139113;rank=2 scaffold_70 . exon 188750 189269 . + . ID=Physo139113.2;Parent=Physo139113;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 189359 189362 . + 0 ID=Physo139113;Parent=Physo139113;rank=3 scaffold_70 . repeat_region 189237 189413 . - . description=LSU-rRNA_Hca scaffold_70 . repeat_region 191296 191304 . ? . description=dust scaffold_70 . repeat_region 198776 198789 . ? . description=dust scaffold_70 . repeat_region 198816 198823 . ? . description=dust scaffold_70 . exon 189359 189413 . + . ID=Physo139113.3;Parent=Physo139113;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_70 ensembl protein_coding_gene 189484 190677 . - . ID=Physo139114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700049;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 189484 190677 . - . ID=Physo139114;Parent=Physo139114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 189484 189831 . - 0 ID=Physo139114;Parent=Physo139114;rank=4 scaffold_70 . exon 189484 189831 . - . ID=Physo139114.4;Parent=Physo139114;constitutive=1;rank=4 scaffold_70 . CDS 189932 189988 . - 0 ID=Physo139114;Parent=Physo139114;rank=3 scaffold_70 . exon 189932 189988 . - . ID=Physo139114.3;Parent=Physo139114;constitutive=1;rank=3 scaffold_70 . CDS 190043 190115 . - 0 ID=Physo139114;Parent=Physo139114;rank=2 scaffold_70 . exon 190043 190115 . - . ID=Physo139114.2;Parent=Physo139114;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 190208 190677 . - 0 ID=Physo139114;Parent=Physo139114;rank=1 scaffold_70 . exon 190208 190677 . - . ID=Physo139114.1;Parent=Physo139114;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 191529 194478 . + . ID=Physo139115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700050;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 191529 194478 . + . ID=Physo139115;Parent=Physo139115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 191529 192292 . + 0 ID=Physo139115;Parent=Physo139115;rank=1 scaffold_70 . exon 191529 192292 . + . ID=Physo139115.1;Parent=Physo139115;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 192433 193436 . + 0 ID=Physo139115;Parent=Physo139115;rank=2 scaffold_70 . exon 192433 193436 . + . ID=Physo139115.2;Parent=Physo139115;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 193531 193545 . + 0 ID=Physo139115;Parent=Physo139115;rank=3 scaffold_70 . exon 193531 193545 . + . ID=Physo139115.3;Parent=Physo139115;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 193685 193858 . + 0 ID=Physo139115;Parent=Physo139115;rank=4 scaffold_70 . exon 193685 193858 . + . ID=Physo139115.4;Parent=Physo139115;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 193892 194478 . + 0 ID=Physo139115;Parent=Physo139115;rank=5 scaffold_70 . exon 193892 194478 . + . ID=Physo139115.5;Parent=Physo139115;constitutive=1;ensembl_phase=1;rank=5 scaffold_70 ensembl protein_coding_gene 195937 197670 . - . ID=Physo139116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700051;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 195937 197670 . - . ID=Physo139116;Parent=Physo139116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 195937 196055 . - 0 ID=Physo139116;Parent=Physo139116;rank=2 scaffold_70 . exon 195937 196055 . - . ID=Physo139116.2;Parent=Physo139116;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 196134 197670 . - 0 ID=Physo139116;Parent=Physo139116;rank=1 scaffold_70 . exon 196134 197670 . - . ID=Physo139116.1;Parent=Physo139116;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . repeat_region 205043 205189 . ? . description=trf scaffold_70 . repeat_region 205061 205194 . ? . description=trf scaffold_70 . biological_region 205219 205221 0.999 - . logic_name=eponine scaffold_70 . biological_region 205315 205320 0.999 + . logic_name=eponine scaffold_70 . biological_region 205400 205404 0.999 - . logic_name=eponine scaffold_70 . biological_region 205445 205452 0.999 - . logic_name=eponine scaffold_70 . biological_region 205484 205487 0.999 - . logic_name=eponine scaffold_70 . biological_region 205500 205504 0.999 + . logic_name=eponine scaffold_70 . biological_region 205510 205511 0.999 - . logic_name=eponine scaffold_70 . biological_region 205540 205542 0.999 + . logic_name=eponine scaffold_70 . biological_region 205672 205676 0.999 - . logic_name=eponine scaffold_70 . biological_region 205683 205686 0.999 - . logic_name=eponine scaffold_70 . biological_region 206148 206152 0.999 - . logic_name=eponine scaffold_70 . repeat_region 206437 206459 . ? . description=trf scaffold_70 . biological_region 206606 206610 0.999 - . logic_name=eponine scaffold_70 ensembl protein_coding_gene 200078 201869 . - . ID=Physo139117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700052;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 200078 201869 . - . ID=Physo139117;Parent=Physo139117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 200078 201025 . - 0 ID=Physo139117;Parent=Physo139117;rank=3 scaffold_70 . exon 200078 201025 . - . ID=Physo139117.3;Parent=Physo139117;constitutive=1;rank=3 scaffold_70 . CDS 201102 201289 . - 0 ID=Physo139117;Parent=Physo139117;rank=2 scaffold_70 . exon 201102 201289 . - . ID=Physo139117.2;Parent=Physo139117;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 201365 201869 . - 0 ID=Physo139117;Parent=Physo139117;rank=1 scaffold_70 . exon 201365 201869 . - . ID=Physo139117.1;Parent=Physo139117;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 202281 202858 . + . ID=Physo157934;biotype=protein_coding;external_name=C_scaffold_70000018;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 202281 202858 . + . ID=Physo157934;Parent=Physo157934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 202281 202545 . + . ID=Physo157934.1;Parent=Physo157934;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_70 . CDS 202283 202545 . + 0 ID=Physo157934;Parent=Physo157934;rank=1 scaffold_70 . CDS 202774 202858 . + 0 ID=Physo157934;Parent=Physo157934;rank=2 scaffold_70 . exon 202774 202858 . + . ID=Physo157934.2;Parent=Physo157934;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 ensembl protein_coding_gene 203269 205527 . - . ID=Physo157935;biotype=protein_coding;external_name=C_scaffold_70000019;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 203269 205527 . - . ID=Physo157935;Parent=Physo157935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 203269 203376 . - 0 ID=Physo157935;Parent=Physo157935;rank=10 scaffold_70 . exon 203269 203376 . - . ID=Physo157935.10;Parent=Physo157935;constitutive=1;rank=10 scaffold_70 . CDS 203459 203520 . - 0 ID=Physo157935;Parent=Physo157935;rank=9 scaffold_70 . exon 203459 203520 . - . ID=Physo157935.9;Parent=Physo157935;constitutive=1;ensembl_phase=1;rank=9 scaffold_70 . CDS 203588 203674 . - 0 ID=Physo157935;Parent=Physo157935;rank=8 scaffold_70 . exon 203588 203674 . - . ID=Physo157935.8;Parent=Physo157935;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_70 . CDS 203739 203817 . - 0 ID=Physo157935;Parent=Physo157935;rank=7 scaffold_70 . exon 203739 203817 . - . ID=Physo157935.7;Parent=Physo157935;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_70 . CDS 203887 204071 . - 0 ID=Physo157935;Parent=Physo157935;rank=6 scaffold_70 . exon 203887 204071 . - . ID=Physo157935.6;Parent=Physo157935;constitutive=1;ensembl_phase=1;rank=6 scaffold_70 . CDS 204154 204210 . - 0 ID=Physo157935;Parent=Physo157935;rank=5 scaffold_70 . exon 204154 204210 . - . ID=Physo157935.5;Parent=Physo157935;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_70 . CDS 204308 204767 . - 0 ID=Physo157935;Parent=Physo157935;rank=4 scaffold_70 . exon 204308 204767 . - . ID=Physo157935.4;Parent=Physo157935;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_70 . CDS 204840 204943 . - 0 ID=Physo157935;Parent=Physo157935;rank=3 scaffold_70 . exon 204840 204943 . - . ID=Physo157935.3;Parent=Physo157935;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 205032 205273 . - 0 ID=Physo157935;Parent=Physo157935;rank=2 scaffold_70 . exon 205032 205273 . - . ID=Physo157935.2;Parent=Physo157935;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 205301 205527 . - 0 ID=Physo157935;Parent=Physo157935;rank=1 scaffold_70 . exon 205301 205527 . - . ID=Physo157935.1;Parent=Physo157935;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 205917 209430 . + . ID=Physo157938;biotype=protein_coding;external_name=C_scaffold_70000022;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 205917 209430 . + . ID=Physo157938;Parent=Physo157938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 205917 206378 . + 0 ID=Physo157938;Parent=Physo157938;rank=1 scaffold_70 . exon 205917 206378 . + . ID=Physo157938.1;Parent=Physo157938;constitutive=1;rank=1 scaffold_70 . CDS 206475 207273 . + 0 ID=Physo157938;Parent=Physo157938;rank=2 scaffold_70 . exon 206475 207273 . + . ID=Physo157938.2;Parent=Physo157938;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 207550 207578 . + 0 ID=Physo157938;Parent=Physo157938;rank=3 scaffold_70 . exon 207550 207578 . + . ID=Physo157938.3;Parent=Physo157938;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 207966 208229 . + 0 ID=Physo157938;Parent=Physo157938;rank=4 scaffold_70 . exon 207966 208229 . + . ID=Physo157938.4;Parent=Physo157938;constitutive=1;rank=4 scaffold_70 . CDS 208656 208907 . + 0 ID=Physo157938;Parent=Physo157938;rank=5 scaffold_70 . exon 208656 208907 . + . ID=Physo157938.5;Parent=Physo157938;constitutive=1;rank=5 scaffold_70 . CDS 209001 209181 . + 0 ID=Physo157938;Parent=Physo157938;rank=6 scaffold_70 . CDS 209260 209430 . + 0 ID=Physo157938;Parent=Physo157938;rank=7 scaffold_70 ensembl protein_coding_gene 218277 219503 . + . ID=Physo139121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700056;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 218277 219503 . + . ID=Physo139121;Parent=Physo139121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 218277 219503 . + 0 ID=Physo139121;Parent=Physo139121;rank=1 scaffold_70 . exon 218277 219503 . + . ID=Physo139121.1;Parent=Physo139121;constitutive=1;rank=1 scaffold_70 . exon 209001 209181 . + . ID=Physo157938.6;Parent=Physo157938;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_70 . exon 209260 209430 . + . ID=Physo157938.7;Parent=Physo157938;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_70 . biological_region 221759 221759 0.999 + . logic_name=eponine scaffold_70 . repeat_region 223118 223161 . ? . description=trf scaffold_70 . biological_region 223543 223544 0.999 - . logic_name=eponine scaffold_70 . repeat_region 225820 225837 . ? . description=dust scaffold_70 ensembl protein_coding_gene 227313 227536 . - . ID=Physo120030;biotype=protein_coding;external_name=estExt_Genewise1.C_700089;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 227313 227536 . - . ID=Physo120030;Parent=Physo120030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 227313 227405 . - 0 ID=Physo120030;Parent=Physo120030;rank=1 scaffold_70 . exon 227313 227536 . - . ID=Physo120030.1;Parent=Physo120030;constitutive=1;ensembl_phase=-1;rank=1 scaffold_70 ensembl protein_coding_gene 219941 220556 . + . ID=Physo139122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700057;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 219941 220556 . + . ID=Physo139122;Parent=Physo139122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 219941 220228 . + 0 ID=Physo139122;Parent=Physo139122;rank=1 scaffold_70 . exon 219941 220228 . + . ID=Physo139122.1;Parent=Physo139122;constitutive=1;rank=1 scaffold_70 . CDS 220310 220438 . + 0 ID=Physo139122;Parent=Physo139122;rank=2 scaffold_70 . exon 220310 220556 . + . ID=Physo139122.2;Parent=Physo139122;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_70 ensembl protein_coding_gene 221521 222082 . - . ID=Physo139123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700058;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 221521 222082 . - . ID=Physo139123;Parent=Physo139123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 221521 221698 . - 0 ID=Physo139123;Parent=Physo139123;rank=2 scaffold_70 . exon 221521 221698 . - . ID=Physo139123.2;Parent=Physo139123;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 221853 222082 . - 0 ID=Physo139123;Parent=Physo139123;rank=1 scaffold_70 . exon 221853 222082 . - . ID=Physo139123.1;Parent=Physo139123;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 222910 223368 . + . ID=Physo139124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700059;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 222910 223368 . + . ID=Physo139124;Parent=Physo139124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 222910 223187 . + 0 ID=Physo139124;Parent=Physo139124;rank=1 scaffold_70 . exon 222910 223187 . + . ID=Physo139124.1;Parent=Physo139124;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 223296 223368 . + 0 ID=Physo139124;Parent=Physo139124;rank=2 scaffold_70 . exon 223296 223368 . + . ID=Physo139124.2;Parent=Physo139124;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 ensembl protein_coding_gene 233564 234223 . - . ID=Physo139125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700060;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 233564 234223 . - . ID=Physo139125;Parent=Physo139125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 233564 234223 . - 0 ID=Physo139125;Parent=Physo139125;rank=1 scaffold_70 . exon 233564 234223 . - . ID=Physo139125.1;Parent=Physo139125;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 237151 240162 . + . ID=Physo157939;biotype=protein_coding;external_name=C_scaffold_70000023;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 237151 240162 . + . ID=Physo157939;Parent=Physo157939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 237151 237236 . + 0 ID=Physo157939;Parent=Physo157939;rank=1 scaffold_70 . exon 237151 237236 . + . ID=Physo157939.1;Parent=Physo157939;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 237282 239487 . + 0 ID=Physo157939;Parent=Physo157939;rank=2 scaffold_70 . exon 237282 239487 . + . ID=Physo157939.2;Parent=Physo157939;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 239571 239700 . + 0 ID=Physo157939;Parent=Physo157939;rank=3 scaffold_70 . CDS 239829 239842 . + 0 ID=Physo157939;Parent=Physo157939;rank=4 scaffold_70 . CDS 239947 240162 . + 0 ID=Physo157939;Parent=Physo157939;rank=5 scaffold_70 . biological_region 240253 240253 0.999 - . logic_name=eponine scaffold_70 . biological_region 245693 245696 0.999 + . logic_name=eponine scaffold_70 . biological_region 246084 246088 0.999 - . logic_name=eponine scaffold_70 . biological_region 247045 247046 0.999 + . logic_name=eponine scaffold_70 . repeat_region 247512 247540 . ? . description=trf scaffold_70 . repeat_region 247566 247647 . ? . description=trf scaffold_70 . repeat_region 247656 247682 . ? . description=trf scaffold_70 . biological_region 248252 248255 0.999 + . logic_name=eponine scaffold_70 . biological_region 248356 248360 0.999 - . logic_name=eponine scaffold_70 ensembl protein_coding_gene 241455 242070 . - . ID=Physo139127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700062;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 241455 242070 . - . ID=Physo139127;Parent=Physo139127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 241455 241701 . - . ID=Physo139127.2;Parent=Physo139127;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_70 . CDS 241573 241701 . - 0 ID=Physo139127;Parent=Physo139127;rank=2 scaffold_70 . CDS 241783 242070 . - 0 ID=Physo139127;Parent=Physo139127;rank=1 scaffold_70 . exon 241783 242070 . - . ID=Physo139127.1;Parent=Physo139127;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 242314 242889 . - . ID=Physo139128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700063;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 242314 242889 . - . ID=Physo139128;Parent=Physo139128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 242314 242889 . - 0 ID=Physo139128;Parent=Physo139128;rank=1 scaffold_70 . exon 242314 242889 . - . ID=Physo139128.1;Parent=Physo139128;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 244551 248990 . - . ID=Physo139129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700064;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 244551 248990 . - . ID=Physo139129;Parent=Physo139129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 244551 244589 . - 0 ID=Physo139129;Parent=Physo139129;rank=7 scaffold_70 . exon 244551 244589 . - . ID=Physo139129.7;Parent=Physo139129;constitutive=1;rank=7 scaffold_70 . CDS 244668 244766 . - 0 ID=Physo139129;Parent=Physo139129;rank=6 scaffold_70 . exon 244668 244766 . - . ID=Physo139129.6;Parent=Physo139129;constitutive=1;rank=6 scaffold_70 . CDS 244798 244808 . - 0 ID=Physo139129;Parent=Physo139129;rank=5 scaffold_70 . exon 244798 244808 . - . ID=Physo139129.5;Parent=Physo139129;constitutive=1;ensembl_phase=1;rank=5 scaffold_70 . CDS 244975 245165 . - 0 ID=Physo139129;Parent=Physo139129;rank=4 scaffold_70 . exon 244975 245165 . - . ID=Physo139129.4;Parent=Physo139129;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 245316 246925 . - 0 ID=Physo139129;Parent=Physo139129;rank=3 scaffold_70 . exon 245316 246925 . - . ID=Physo139129.3;Parent=Physo139129;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_70 . CDS 246997 247147 . - 0 ID=Physo139129;Parent=Physo139129;rank=2 scaffold_70 . exon 246997 247147 . - . ID=Physo139129.2;Parent=Physo139129;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 247441 248990 . - 0 ID=Physo139129;Parent=Physo139129;rank=1 scaffold_70 . exon 247441 248990 . - . ID=Physo139129.1;Parent=Physo139129;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . exon 239571 239700 . + . ID=Physo157939.3;Parent=Physo157939;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . exon 239829 239842 . + . ID=Physo157939.4;Parent=Physo157939;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . exon 239947 240162 . + . ID=Physo157939.5;Parent=Physo157939;constitutive=1;rank=5 scaffold_70 ensembl protein_coding_gene 255901 257923 . - . ID=Physo139130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700065;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 255901 257923 . - . ID=Physo139130;Parent=Physo139130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 255901 256728 . - 0 ID=Physo139130;Parent=Physo139130;rank=3 scaffold_70 . exon 255901 256728 . - . ID=Physo139130.3;Parent=Physo139130;constitutive=1;rank=3 scaffold_70 . CDS 256809 257248 . - 0 ID=Physo139130;Parent=Physo139130;rank=2 scaffold_70 . exon 256809 257248 . - . ID=Physo139130.2;Parent=Physo139130;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 257269 257923 . - 0 ID=Physo139130;Parent=Physo139130;rank=1 scaffold_70 . exon 257269 257923 . - . ID=Physo139130.1;Parent=Physo139130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . repeat_region 261317 261357 . ? . description=trf scaffold_70 . repeat_region 262633 262644 . ? . description=dust scaffold_70 . repeat_region 266118 266125 . ? . description=dust scaffold_70 ensembl protein_coding_gene 262350 265346 . + . ID=Physo139131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700066;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 262350 265346 . + . ID=Physo139131;Parent=Physo139131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 262350 262584 . + 0 ID=Physo139131;Parent=Physo139131;rank=1 scaffold_70 . exon 262350 262584 . + . ID=Physo139131.1;Parent=Physo139131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 262743 262830 . + 0 ID=Physo139131;Parent=Physo139131;rank=2 scaffold_70 . exon 262743 262830 . + . ID=Physo139131.2;Parent=Physo139131;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 262872 262973 . + 0 ID=Physo139131;Parent=Physo139131;rank=3 scaffold_70 . exon 262872 262973 . + . ID=Physo139131.3;Parent=Physo139131;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_70 . CDS 263089 263739 . + 0 ID=Physo139131;Parent=Physo139131;rank=4 scaffold_70 . exon 263089 263739 . + . ID=Physo139131.4;Parent=Physo139131;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_70 . CDS 263897 263903 . + 0 ID=Physo139131;Parent=Physo139131;rank=5 scaffold_70 . exon 263897 263903 . + . ID=Physo139131.5;Parent=Physo139131;constitutive=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 263949 264315 . + 0 ID=Physo139131;Parent=Physo139131;rank=6 scaffold_70 . exon 263949 264315 . + . ID=Physo139131.6;Parent=Physo139131;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_70 . CDS 264390 264498 . + 0 ID=Physo139131;Parent=Physo139131;rank=7 scaffold_70 . exon 264390 264498 . + . ID=Physo139131.7;Parent=Physo139131;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_70 . CDS 264590 264609 . + 0 ID=Physo139131;Parent=Physo139131;rank=8 scaffold_70 . exon 264590 264609 . + . ID=Physo139131.8;Parent=Physo139131;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_70 . CDS 264791 264859 . + 0 ID=Physo139131;Parent=Physo139131;rank=9 scaffold_70 . exon 264791 264859 . + . ID=Physo139131.9;Parent=Physo139131;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_70 . CDS 265108 265346 . + 0 ID=Physo139131;Parent=Physo139131;rank=10 scaffold_70 . exon 265108 265346 . + . ID=Physo139131.10;Parent=Physo139131;constitutive=1;ensembl_phase=1;rank=10 scaffold_70 . biological_region 272764 272766 0.999 + . logic_name=eponine scaffold_70 . biological_region 274098 274101 0.999 + . logic_name=eponine scaffold_70 . biological_region 274159 274164 0.999 + . logic_name=eponine scaffold_70 . biological_region 274201 274203 0.999 + . logic_name=eponine scaffold_70 . biological_region 274206 274211 0.999 + . logic_name=eponine scaffold_70 . biological_region 274272 274278 0.999 + . logic_name=eponine scaffold_70 ensembl protein_coding_gene 275760 276635 . - . ID=Physo139132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700067;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 275760 276635 . - . ID=Physo139132;Parent=Physo139132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 275760 276635 . - 0 ID=Physo139132;Parent=Physo139132;rank=1 scaffold_70 . exon 275760 276635 . - . ID=Physo139132.1;Parent=Physo139132;constitutive=1;rank=1 scaffold_70 . repeat_region 279590 279740 . ? . description=trf scaffold_70 . repeat_region 287603 287612 . ? . description=dust scaffold_70 . repeat_region 287734 287741 . ? . description=dust scaffold_70 . biological_region 296162 296164 0.999 - . logic_name=eponine scaffold_70 . biological_region 297389 297390 0.999 - . logic_name=eponine scaffold_70 ensembl protein_coding_gene 294181 296349 . + . ID=Physo139133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700068;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 294181 296349 . + . ID=Physo139133;Parent=Physo139133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 294181 296349 . + 0 ID=Physo139133;Parent=Physo139133;rank=1 scaffold_70 . exon 294181 296349 . + . ID=Physo139133.1;Parent=Physo139133;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 296430 298024 . - . ID=Physo139134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700069;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 296430 298024 . - . ID=Physo139134;Parent=Physo139134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 296430 296435 . - 0 ID=Physo139134;Parent=Physo139134;rank=2 scaffold_70 . exon 296430 296435 . - . ID=Physo139134.2;Parent=Physo139134;constitutive=1;rank=2 scaffold_70 . CDS 296459 298024 . - 0 ID=Physo139134;Parent=Physo139134;rank=1 scaffold_70 . exon 296459 298024 . - . ID=Physo139134.1;Parent=Physo139134;constitutive=1;rank=1 scaffold_70 . repeat_region 304176 304206 . ? . description=trf scaffold_70 . repeat_region 304210 304276 . ? . description=trf scaffold_70 . repeat_region 304217 304266 . ? . description=dust scaffold_70 . repeat_region 304363 304424 . ? . description=dust scaffold_70 . repeat_region 304530 304641 . ? . description=dust scaffold_70 . repeat_region 304581 304662 . ? . description=trf scaffold_70 . repeat_region 304907 304967 . ? . description=dust scaffold_70 . repeat_region 305097 305158 . ? . description=trf scaffold_70 . repeat_region 305099 305174 . ? . description=dust scaffold_70 . repeat_region 305496 305653 . ? . description=trf scaffold_70 . repeat_region 306322 306556 . ? . description=trf scaffold_70 . repeat_region 306324 306556 . ? . description=trf scaffold_70 ensembl protein_coding_gene 301465 302511 . - . ID=Physo139135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700070;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 301465 302511 . - . ID=Physo139135;Parent=Physo139135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 301465 302511 . - 0 ID=Physo139135;Parent=Physo139135;rank=1 scaffold_70 . exon 301465 302511 . - . ID=Physo139135.1;Parent=Physo139135;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 304167 307514 . - . ID=Physo139136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700071;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 304167 307514 . - . ID=Physo139136;Parent=Physo139136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 304167 307514 . - 0 ID=Physo139136;Parent=Physo139136;rank=1 scaffold_70 . exon 304167 307514 . - . ID=Physo139136.1;Parent=Physo139136;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 308159 309379 . - . ID=Physo139137;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700072;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 308159 309379 . - . ID=Physo139137;Parent=Physo139137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 308159 309379 . - 0 ID=Physo139137;Parent=Physo139137;rank=1 scaffold_70 . exon 308159 309379 . - . ID=Physo139137.1;Parent=Physo139137;constitutive=1;rank=1 scaffold_70 . biological_region 309163 309165 0.999 + . logic_name=eponine scaffold_70 . biological_region 309180 309182 0.999 + . logic_name=eponine scaffold_70 . biological_region 310130 310138 0.999 + . logic_name=eponine scaffold_70 . biological_region 310222 310229 0.999 - . logic_name=eponine scaffold_70 . biological_region 310241 310243 0.999 - . logic_name=eponine scaffold_70 . biological_region 312451 312458 0.999 + . logic_name=eponine scaffold_70 . biological_region 312544 312549 0.999 - . logic_name=eponine scaffold_70 . biological_region 313632 313634 0.999 - . logic_name=eponine scaffold_70 . biological_region 314044 314047 0.999 + . logic_name=eponine scaffold_70 . biological_region 314128 314129 0.999 - . logic_name=eponine scaffold_70 . biological_region 314241 314246 0.999 + . logic_name=eponine scaffold_70 . biological_region 314497 314499 0.999 + . logic_name=eponine scaffold_70 . biological_region 314522 314526 0.999 - . logic_name=eponine scaffold_70 . biological_region 317348 317351 0.999 - . logic_name=eponine scaffold_70 ensembl protein_coding_gene 310066 312643 . + . ID=Physo109187;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_700004;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 310066 312643 . + . ID=Physo109187;Parent=Physo109187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 310066 310182 . + 0 ID=Physo109187;Parent=Physo109187;rank=1 scaffold_70 . exon 310066 310182 . + . ID=Physo109187.1;Parent=Physo109187;constitutive=1;rank=1 scaffold_70 . CDS 310204 310671 . + 0 ID=Physo109187;Parent=Physo109187;rank=2 scaffold_70 . exon 310204 310671 . + . ID=Physo109187.2;Parent=Physo109187;constitutive=1;rank=2 scaffold_70 . CDS 310743 311272 . + 0 ID=Physo109187;Parent=Physo109187;rank=3 scaffold_70 . exon 310743 311272 . + . ID=Physo109187.3;Parent=Physo109187;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_70 . CDS 311348 311420 . + 0 ID=Physo109187;Parent=Physo109187;rank=4 scaffold_70 . exon 311348 311420 . + . ID=Physo109187.4;Parent=Physo109187;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 311491 311962 . + 0 ID=Physo109187;Parent=Physo109187;rank=5 scaffold_70 . exon 311491 311962 . + . ID=Physo109187.5;Parent=Physo109187;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_70 . CDS 312044 312341 . + 0 ID=Physo109187;Parent=Physo109187;rank=6 scaffold_70 . exon 312044 312341 . + . ID=Physo109187.6;Parent=Physo109187;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_70 . CDS 312424 312643 . + 0 ID=Physo109187;Parent=Physo109187;rank=7 scaffold_70 . exon 312424 312643 . + . ID=Physo109187.7;Parent=Physo109187;constitutive=1;ensembl_phase=2;rank=7 scaffold_70 ensembl protein_coding_gene 313919 315184 . + . ID=Physo139139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700074;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 313919 315184 . + . ID=Physo139139;Parent=Physo139139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 313919 315184 . + 0 ID=Physo139139;Parent=Physo139139;rank=1 scaffold_70 . exon 313919 315184 . + . ID=Physo139139.1;Parent=Physo139139;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 315504 319124 . - . ID=Physo157944;biotype=protein_coding;external_name=C_scaffold_70000028;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 315504 319124 . - . ID=Physo157944;Parent=Physo157944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 315504 315790 . - 0 ID=Physo157944;Parent=Physo157944;rank=10 scaffold_70 . exon 315504 315790 . - . ID=Physo157944.10;Parent=Physo157944;constitutive=1;ensembl_phase=1;rank=10 scaffold_70 . CDS 315839 316361 . - 0 ID=Physo157944;Parent=Physo157944;rank=9 scaffold_70 . exon 315839 316361 . - . ID=Physo157944.9;Parent=Physo157944;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_70 . CDS 316395 316914 . - 0 ID=Physo157944;Parent=Physo157944;rank=8 scaffold_70 . exon 316395 316914 . - . ID=Physo157944.8;Parent=Physo157944;constitutive=1;ensembl_phase=2;rank=8 scaffold_70 . CDS 316945 317411 . - 0 ID=Physo157944;Parent=Physo157944;rank=7 scaffold_70 . exon 316945 317411 . - . ID=Physo157944.7;Parent=Physo157944;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_70 . CDS 317459 317460 . - 0 ID=Physo157944;Parent=Physo157944;rank=6 scaffold_70 . exon 317459 317460 . - . ID=Physo157944.6;Parent=Physo157944;constitutive=1;ensembl_phase=1;rank=6 scaffold_70 . CDS 317534 318179 . - 0 ID=Physo157944;Parent=Physo157944;rank=5 scaffold_70 . exon 317534 318179 . - . ID=Physo157944.5;Parent=Physo157944;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_70 . CDS 318207 318311 . - 0 ID=Physo157944;Parent=Physo157944;rank=4 scaffold_70 . exon 318207 318311 . - . ID=Physo157944.4;Parent=Physo157944;constitutive=1;rank=4 scaffold_70 . CDS 318378 318452 . - 0 ID=Physo157944;Parent=Physo157944;rank=3 scaffold_70 . CDS 318528 318836 . - 0 ID=Physo157944;Parent=Physo157944;rank=2 scaffold_70 . CDS 319065 319124 . - 0 ID=Physo157944;Parent=Physo157944;rank=1 scaffold_70 . repeat_region 320066 320073 . ? . description=dust scaffold_70 . repeat_region 321540 321580 . ? . description=dust scaffold_70 ensembl protein_coding_gene 320026 320777 . - . ID=Physo139141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700076;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 320026 320777 . - . ID=Physo139141;Parent=Physo139141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 320026 320062 . - 0 ID=Physo139141;Parent=Physo139141;rank=2 scaffold_70 . exon 320026 320062 . - . ID=Physo139141.2;Parent=Physo139141;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 320302 320777 . - 0 ID=Physo139141;Parent=Physo139141;rank=1 scaffold_70 . exon 320302 320777 . - . ID=Physo139141.1;Parent=Physo139141;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 ensembl protein_coding_gene 321199 321531 . + . ID=Physo139142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700077;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 321199 321531 . + . ID=Physo139142;Parent=Physo139142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 321199 321531 . + 0 ID=Physo139142;Parent=Physo139142;rank=1 scaffold_70 . exon 321199 321531 . + . ID=Physo139142.1;Parent=Physo139142;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 325529 326379 . + . ID=Physo139143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700078;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 325529 326379 . + . ID=Physo139143;Parent=Physo139143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 325529 325578 . + 0 ID=Physo139143;Parent=Physo139143;rank=1 scaffold_70 . exon 325529 325578 . + . ID=Physo139143.1;Parent=Physo139143;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 325710 326379 . + 0 ID=Physo139143;Parent=Physo139143;rank=2 scaffold_70 . exon 325710 326379 . + . ID=Physo139143.2;Parent=Physo139143;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 ensembl protein_coding_gene 326509 327957 . - . ID=Physo139144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700079;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 326509 327957 . - . ID=Physo139144;Parent=Physo139144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 326509 326913 . - 0 ID=Physo139144;Parent=Physo139144;rank=4 scaffold_70 . exon 326509 326913 . - . ID=Physo139144.4;Parent=Physo139144;constitutive=1;rank=4 scaffold_70 . CDS 326991 327397 . - 0 ID=Physo139144;Parent=Physo139144;rank=3 scaffold_70 . exon 326991 327397 . - . ID=Physo139144.3;Parent=Physo139144;constitutive=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 327465 327530 . - 0 ID=Physo139144;Parent=Physo139144;rank=2 scaffold_70 . exon 327465 327530 . - . ID=Physo139144.2;Parent=Physo139144;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 327618 327957 . - 0 ID=Physo139144;Parent=Physo139144;rank=1 scaffold_70 . exon 327618 327957 . - . ID=Physo139144.1;Parent=Physo139144;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . exon 318378 318452 . - . ID=Physo157944.3;Parent=Physo157944;constitutive=1;rank=3 scaffold_70 . exon 318528 318836 . - . ID=Physo157944.2;Parent=Physo157944;constitutive=1;rank=2 scaffold_70 . exon 319065 319124 . - . ID=Physo157944.1;Parent=Physo157944;constitutive=1;rank=1 scaffold_70 . biological_region 328400 328405 0.999 - . logic_name=eponine scaffold_70 . biological_region 331470 331476 0.999 + . logic_name=eponine scaffold_70 . biological_region 331515 331520 0.999 - . logic_name=eponine scaffold_70 . biological_region 331571 331574 0.999 + . logic_name=eponine scaffold_70 . biological_region 331666 331668 0.999 - . logic_name=eponine scaffold_70 . biological_region 331857 331860 0.999 + . logic_name=eponine scaffold_70 . biological_region 331954 331957 0.999 - . logic_name=eponine scaffold_70 . biological_region 331980 331986 0.999 + . logic_name=eponine scaffold_70 . repeat_region 332741 332769 . ? . description=trf scaffold_70 . biological_region 333777 333779 0.999 + . logic_name=eponine scaffold_70 . biological_region 333927 333930 0.999 - . logic_name=eponine scaffold_70 . biological_region 334827 334830 0.999 - . logic_name=eponine scaffold_70 . biological_region 334929 334946 0.999 - . logic_name=eponine scaffold_70 . biological_region 334964 334968 0.999 + . logic_name=eponine scaffold_70 . biological_region 334993 334996 0.999 + . logic_name=eponine scaffold_70 . biological_region 335003 335005 0.999 - . logic_name=eponine scaffold_70 . biological_region 335087 335087 0.999 + . logic_name=eponine scaffold_70 . biological_region 335090 335092 0.999 - . logic_name=eponine scaffold_70 . biological_region 335174 335176 0.999 - . logic_name=eponine scaffold_70 . biological_region 335194 335198 0.999 - . logic_name=eponine scaffold_70 . biological_region 335530 335532 0.999 - . logic_name=eponine scaffold_70 ensembl protein_coding_gene 336610 338277 . - . ID=Physo119958;biotype=protein_coding;external_name=estExt_Genewise1.C_700017;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 336610 338277 . - . ID=Physo119958;Parent=Physo119958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 336610 336675 . - 0 ID=Physo119958;Parent=Physo119958;rank=8 scaffold_70 . exon 336610 336675 . - . ID=Physo119958.8;Parent=Physo119958;constitutive=1;rank=8 scaffold_70 . CDS 336746 336838 . - 0 ID=Physo119958;Parent=Physo119958;rank=7 scaffold_70 . exon 336746 336838 . - . ID=Physo119958.7;Parent=Physo119958;constitutive=1;rank=7 scaffold_70 . CDS 336915 337026 . - 0 ID=Physo119958;Parent=Physo119958;rank=6 scaffold_70 . exon 336915 337026 . - . ID=Physo119958.6;Parent=Physo119958;constitutive=1;ensembl_phase=2;rank=6 scaffold_70 . CDS 337109 337227 . - 0 ID=Physo119958;Parent=Physo119958;rank=5 scaffold_70 . exon 337109 337227 . - . ID=Physo119958.5;Parent=Physo119958;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_70 . CDS 337302 337635 . - 0 ID=Physo119958;Parent=Physo119958;rank=4 scaffold_70 . exon 337302 337635 . - . ID=Physo119958.4;Parent=Physo119958;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 337711 337839 . - 0 ID=Physo119958;Parent=Physo119958;rank=3 scaffold_70 . exon 337711 337839 . - . ID=Physo119958.3;Parent=Physo119958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_70 . CDS 337928 337995 . - 0 ID=Physo119958;Parent=Physo119958;rank=2 scaffold_70 . exon 337928 337995 . - . ID=Physo119958.2;Parent=Physo119958;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 338068 338250 . - 0 ID=Physo119958;Parent=Physo119958;rank=1 scaffold_70 . exon 338068 338277 . - . ID=Physo119958.1;Parent=Physo119958;constitutive=1;ensembl_phase=-1;rank=1 scaffold_70 ensembl protein_coding_gene 328315 330154 . + . ID=Physo139145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700080;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 328315 330154 . + . ID=Physo139145;Parent=Physo139145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 328315 328473 . + 0 ID=Physo139145;Parent=Physo139145;rank=1 scaffold_70 . exon 328315 328473 . + . ID=Physo139145.1;Parent=Physo139145;constitutive=1;rank=1 scaffold_70 . CDS 328595 328865 . + 0 ID=Physo139145;Parent=Physo139145;rank=2 scaffold_70 . exon 328595 328865 . + . ID=Physo139145.2;Parent=Physo139145;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_70 . CDS 328936 329037 . + 0 ID=Physo139145;Parent=Physo139145;rank=3 scaffold_70 . exon 328936 329037 . + . ID=Physo139145.3;Parent=Physo139145;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_70 . CDS 329154 329269 . + 0 ID=Physo139145;Parent=Physo139145;rank=4 scaffold_70 . exon 329154 329269 . + . ID=Physo139145.4;Parent=Physo139145;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 329352 329731 . + 0 ID=Physo139145;Parent=Physo139145;rank=5 scaffold_70 . exon 329352 329731 . + . ID=Physo139145.5;Parent=Physo139145;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_70 . CDS 329808 329889 . + 0 ID=Physo139145;Parent=Physo139145;rank=6 scaffold_70 . exon 329808 329889 . + . ID=Physo139145.6;Parent=Physo139145;constitutive=1;ensembl_phase=2;rank=6 scaffold_70 . CDS 329958 330009 . + 0 ID=Physo139145;Parent=Physo139145;rank=7 scaffold_70 . exon 329958 330009 . + . ID=Physo139145.7;Parent=Physo139145;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_70 . CDS 330084 330154 . + 0 ID=Physo139145;Parent=Physo139145;rank=8 scaffold_70 . exon 330084 330154 . + . ID=Physo139145.8;Parent=Physo139145;constitutive=1;ensembl_phase=1;rank=8 scaffold_70 ensembl protein_coding_gene 330460 333333 . - . ID=Physo139146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700081;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 330460 333333 . - . ID=Physo139146;Parent=Physo139146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 330460 332114 . - 0 ID=Physo139146;Parent=Physo139146;rank=2 scaffold_70 . exon 330460 332114 . - . ID=Physo139146.2;Parent=Physo139146;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 332562 333333 . - 0 ID=Physo139146;Parent=Physo139146;rank=1 scaffold_70 . exon 332562 333333 . - . ID=Physo139146.1;Parent=Physo139146;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 334657 336037 . + . ID=Physo139147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700082;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 334657 336037 . + . ID=Physo139147;Parent=Physo139147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 334657 336037 . + . ID=Physo139147.1;Parent=Physo139147;constitutive=1;ensembl_phase=-1;rank=1 scaffold_70 . CDS 334697 336037 . + 0 ID=Physo139147;Parent=Physo139147;rank=1 scaffold_70 . repeat_region 339898 339906 . ? . description=dust scaffold_70 . repeat_region 346522 346531 . ? . description=dust scaffold_70 ensembl protein_coding_gene 343321 345655 . + . ID=Physo109188;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_700005;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 343321 345655 . + . ID=Physo109188;Parent=Physo109188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 343321 345552 . + 0 ID=Physo109188;Parent=Physo109188;rank=1 scaffold_70 . exon 343321 345655 . + . ID=Physo109188.1;Parent=Physo109188;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_70 ensembl protein_coding_gene 338700 338990 . - . ID=Physo119960;biotype=protein_coding;external_name=estExt_Genewise1.C_700019;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 338700 338990 . - . ID=Physo119960;Parent=Physo119960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 338700 338840 . - 0 ID=Physo119960;Parent=Physo119960;rank=2 scaffold_70 . exon 338700 338840 . - . ID=Physo119960.2;Parent=Physo119960;constitutive=1;rank=2 scaffold_70 . CDS 338922 338969 . - 0 ID=Physo119960;Parent=Physo119960;rank=1 scaffold_70 . exon 338922 338990 . - . ID=Physo119960.1;Parent=Physo119960;constitutive=1;ensembl_phase=-1;rank=1 scaffold_70 ensembl protein_coding_gene 341282 342480 . - . ID=Physo139149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700084;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 341282 342480 . - . ID=Physo139149;Parent=Physo139149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 341282 341300 . - 0 ID=Physo139149;Parent=Physo139149;rank=3 scaffold_70 . exon 341282 341300 . - . ID=Physo139149.3;Parent=Physo139149;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 341338 341405 . - 0 ID=Physo139149;Parent=Physo139149;rank=2 scaffold_70 . exon 341338 341405 . - . ID=Physo139149.2;Parent=Physo139149;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 341443 342480 . - 0 ID=Physo139149;Parent=Physo139149;rank=1 scaffold_70 . exon 341443 342480 . - . ID=Physo139149.1;Parent=Physo139149;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 345754 347488 . - . ID=Physo157949;biotype=protein_coding;external_name=C_scaffold_70000033;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 345754 347488 . - . ID=Physo157949;Parent=Physo157949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 345754 346517 . - 0 ID=Physo157949;Parent=Physo157949;rank=2 scaffold_70 . exon 345754 346517 . - . ID=Physo157949.2;Parent=Physo157949;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 346594 347488 . - 0 ID=Physo157949;Parent=Physo157949;rank=1 scaffold_70 . exon 346594 347488 . - . ID=Physo157949.1;Parent=Physo157949;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . repeat_region 348245 348264 . ? . description=trf scaffold_70 . repeat_region 348925 349012 . ? . description=trf scaffold_70 . repeat_region 349028 349150 . ? . description=trf scaffold_70 ensembl protein_coding_gene 348229 356751 . + . ID=Physo139152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700087;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 348229 356751 . + . ID=Physo139152;Parent=Physo139152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 348229 348304 . + 0 ID=Physo139152;Parent=Physo139152;rank=1 scaffold_70 . exon 348229 348304 . + . ID=Physo139152.1;Parent=Physo139152;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 348382 349739 . + 0 ID=Physo139152;Parent=Physo139152;rank=2 scaffold_70 . exon 348382 349739 . + . ID=Physo139152.2;Parent=Physo139152;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . CDS 349817 351113 . + 0 ID=Physo139152;Parent=Physo139152;rank=3 scaffold_70 . exon 349817 351113 . + . ID=Physo139152.3;Parent=Physo139152;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_70 . CDS 351189 351277 . + 0 ID=Physo139152;Parent=Physo139152;rank=4 scaffold_70 . exon 351189 351277 . + . ID=Physo139152.4;Parent=Physo139152;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 351349 354510 . + 0 ID=Physo139152;Parent=Physo139152;rank=5 scaffold_70 . exon 351349 354510 . + . ID=Physo139152.5;Parent=Physo139152;constitutive=1;rank=5 scaffold_70 . CDS 354592 355005 . + 0 ID=Physo139152;Parent=Physo139152;rank=6 scaffold_70 . exon 354592 355005 . + . ID=Physo139152.6;Parent=Physo139152;constitutive=1;rank=6 scaffold_70 . CDS 355506 355778 . + 0 ID=Physo139152;Parent=Physo139152;rank=7 scaffold_70 . exon 355506 355778 . + . ID=Physo139152.7;Parent=Physo139152;constitutive=1;rank=7 scaffold_70 . CDS 355840 355967 . + 0 ID=Physo139152;Parent=Physo139152;rank=8 scaffold_70 . exon 355840 355967 . + . ID=Physo139152.8;Parent=Physo139152;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_70 . CDS 356048 356159 . + 0 ID=Physo139152;Parent=Physo139152;rank=9 scaffold_70 . exon 356048 356159 . + . ID=Physo139152.9;Parent=Physo139152;constitutive=1;ensembl_phase=2;rank=9 scaffold_70 . CDS 356244 356366 . + 0 ID=Physo139152;Parent=Physo139152;rank=10 scaffold_70 . exon 356244 356366 . + . ID=Physo139152.10;Parent=Physo139152;constitutive=1;rank=10 scaffold_70 . CDS 356453 356543 . + 0 ID=Physo139152;Parent=Physo139152;rank=11 scaffold_70 . exon 356453 356543 . + . ID=Physo139152.11;Parent=Physo139152;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_70 . CDS 356621 356751 . + 0 ID=Physo139152;Parent=Physo139152;rank=12 scaffold_70 . exon 356621 356751 . + . ID=Physo139152.12;Parent=Physo139152;constitutive=1;ensembl_phase=1;rank=12 scaffold_70 . repeat_region 358521 358529 . ? . description=dust scaffold_70 . biological_region 364995 365000 0.999 + . logic_name=eponine scaffold_70 . biological_region 365023 365026 0.999 - . logic_name=eponine scaffold_70 . biological_region 365043 365046 0.999 + . logic_name=eponine scaffold_70 . biological_region 365044 365050 0.999 - . logic_name=eponine scaffold_70 . biological_region 365098 365103 0.999 - . logic_name=eponine scaffold_70 . biological_region 365407 365409 0.999 + . logic_name=eponine scaffold_70 . biological_region 365716 365722 0.999 + . logic_name=eponine scaffold_70 . biological_region 366742 366744 0.999 + . logic_name=eponine scaffold_70 ensembl protein_coding_gene 359104 360799 . + . ID=Physo139153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700088;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 359104 360799 . + . ID=Physo139153;Parent=Physo139153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 359104 359211 . + . ID=Physo139153.1;Parent=Physo139153;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_70 . CDS 359108 359211 . + 0 ID=Physo139153;Parent=Physo139153;rank=1 scaffold_70 . CDS 359328 359389 . + 0 ID=Physo139153;Parent=Physo139153;rank=2 scaffold_70 . exon 359328 359389 . + . ID=Physo139153.2;Parent=Physo139153;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 359470 360532 . + 0 ID=Physo139153;Parent=Physo139153;rank=3 scaffold_70 . exon 359470 360532 . + . ID=Physo139153.3;Parent=Physo139153;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_70 . CDS 360610 360673 . + 0 ID=Physo139153;Parent=Physo139153;rank=4 scaffold_70 . exon 360610 360673 . + . ID=Physo139153.4;Parent=Physo139153;constitutive=1;ensembl_phase=2;rank=4 scaffold_70 . CDS 360746 360799 . + 0 ID=Physo139153;Parent=Physo139153;rank=5 scaffold_70 . exon 360746 360799 . + . ID=Physo139153.5;Parent=Physo139153;constitutive=1;rank=5 scaffold_70 ensembl protein_coding_gene 361052 365128 . - . ID=Physo139154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700089;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 361052 365128 . - . ID=Physo139154;Parent=Physo139154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 361052 361436 . - 0 ID=Physo139154;Parent=Physo139154;rank=3 scaffold_70 . exon 361052 361436 . - . ID=Physo139154.3;Parent=Physo139154;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 361516 361655 . - 0 ID=Physo139154;Parent=Physo139154;rank=2 scaffold_70 . exon 361516 361655 . - . ID=Physo139154.2;Parent=Physo139154;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_70 . CDS 361727 365128 . - 0 ID=Physo139154;Parent=Physo139154;rank=1 scaffold_70 . exon 361727 365128 . - . ID=Physo139154.1;Parent=Physo139154;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 365393 368997 . - . ID=Physo139155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700090;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 365393 368997 . - . ID=Physo139155;Parent=Physo139155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 365393 368997 . - . ID=Physo139155.1;Parent=Physo139155;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_70 . CDS 365440 368997 . - 0 ID=Physo139155;Parent=Physo139155;rank=1 scaffold_70 . repeat_region 373462 373483 . ? . description=trf scaffold_70 ensembl pseudogene 373577 374656 . + . ID=Physo119968;biotype=pseudogene;external_name=estExt_Genewise1.C_700027;logic_name=jgi_physo1_1 scaffold_70 ensembl pseudogene 373577 374656 . + . ID=Physo119968;Parent=Physo119968;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_70 . exon 373577 374656 . + . ID=Physo119968.1;Parent=Physo119968;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 369475 371122 . - . ID=Physo139156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700091;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 369475 371122 . - . ID=Physo139156;Parent=Physo139156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 369475 369866 . - . ID=Physo139156.6;Parent=Physo139156;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_70 . CDS 369622 369866 . - 0 ID=Physo139156;Parent=Physo139156;rank=6 scaffold_70 . CDS 369937 370117 . - 0 ID=Physo139156;Parent=Physo139156;rank=5 scaffold_70 . exon 369937 370117 . - . ID=Physo139156.5;Parent=Physo139156;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_70 . CDS 370195 370313 . - 0 ID=Physo139156;Parent=Physo139156;rank=4 scaffold_70 . exon 370195 370313 . - . ID=Physo139156.4;Parent=Physo139156;constitutive=1;ensembl_phase=1;rank=4 scaffold_70 . CDS 370383 370510 . - 0 ID=Physo139156;Parent=Physo139156;rank=3 scaffold_70 . exon 370383 370510 . - . ID=Physo139156.3;Parent=Physo139156;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 370581 370659 . - 0 ID=Physo139156;Parent=Physo139156;rank=2 scaffold_70 . exon 370581 370659 . - . ID=Physo139156.2;Parent=Physo139156;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 370740 371103 . - 0 ID=Physo139156;Parent=Physo139156;rank=1 scaffold_70 . exon 370740 371122 . - . ID=Physo139156.1;Parent=Physo139156;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_70 ensembl protein_coding_gene 371486 373107 . + . ID=Physo139157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700092;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 371486 373107 . + . ID=Physo139157;Parent=Physo139157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 371486 371942 . + . ID=Physo139157.1;Parent=Physo139157;constitutive=1;ensembl_phase=-1;rank=1 scaffold_70 . CDS 371490 371942 . + 0 ID=Physo139157;Parent=Physo139157;rank=1 scaffold_70 . CDS 372021 372155 . + 0 ID=Physo139157;Parent=Physo139157;rank=2 scaffold_70 . exon 372021 372155 . + . ID=Physo139157.2;Parent=Physo139157;constitutive=1;rank=2 scaffold_70 . CDS 372237 372302 . + 0 ID=Physo139157;Parent=Physo139157;rank=3 scaffold_70 . exon 372237 372302 . + . ID=Physo139157.3;Parent=Physo139157;constitutive=1;rank=3 scaffold_70 . CDS 372373 372632 . + 0 ID=Physo139157;Parent=Physo139157;rank=4 scaffold_70 . exon 372373 372632 . + . ID=Physo139157.4;Parent=Physo139157;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_70 . CDS 372719 372773 . + 0 ID=Physo139157;Parent=Physo139157;rank=5 scaffold_70 . exon 372719 372773 . + . ID=Physo139157.5;Parent=Physo139157;constitutive=1;ensembl_phase=2;rank=5 scaffold_70 . CDS 372838 373107 . + 0 ID=Physo139157;Parent=Physo139157;rank=6 scaffold_70 . exon 372838 373107 . + . ID=Physo139157.6;Parent=Physo139157;constitutive=1;rank=6 scaffold_70 ensembl protein_coding_gene 375113 375852 . + . ID=Physo139159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700094;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 375113 375852 . + . ID=Physo139159;Parent=Physo139159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . exon 375113 375852 . + . ID=Physo139159.1;Parent=Physo139159;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_70 . CDS 375175 375819 . + 0 ID=Physo139159;Parent=Physo139159;rank=1 scaffold_70 ensembl protein_coding_gene 376050 377408 . + . ID=Physo157951;biotype=protein_coding;external_name=C_scaffold_70000035;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 376050 377408 . + . ID=Physo157951;Parent=Physo157951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 376050 376432 . + 0 ID=Physo157951;Parent=Physo157951;rank=1 scaffold_70 . exon 376050 376432 . + . ID=Physo157951.1;Parent=Physo157951;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_70 . CDS 376483 376714 . + 0 ID=Physo157951;Parent=Physo157951;rank=2 scaffold_70 . exon 376483 376714 . + . ID=Physo157951.2;Parent=Physo157951;constitutive=1;ensembl_phase=2;rank=2 scaffold_70 . CDS 376787 376843 . + 0 ID=Physo157951;Parent=Physo157951;rank=3 scaffold_70 . exon 376787 376843 . + . ID=Physo157951.3;Parent=Physo157951;constitutive=1;rank=3 scaffold_70 . CDS 376922 377234 . + 0 ID=Physo157951;Parent=Physo157951;rank=4 scaffold_70 . exon 376922 377234 . + . ID=Physo157951.4;Parent=Physo157951;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_70 . CDS 377305 377408 . + 0 ID=Physo157951;Parent=Physo157951;rank=5 scaffold_70 . exon 377305 377408 . + . ID=Physo157951.5;Parent=Physo157951;constitutive=1;ensembl_phase=1;rank=5 scaffold_70 ensembl protein_coding_gene 377674 378837 . - . ID=Physo157952;biotype=protein_coding;external_name=C_scaffold_70000036;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 377674 378837 . - . ID=Physo157952;Parent=Physo157952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 377674 378009 . - 0 ID=Physo157952;Parent=Physo157952;rank=5 scaffold_70 . exon 377674 378009 . - . ID=Physo157952.5;Parent=Physo157952;constitutive=1;rank=5 scaffold_70 . CDS 378031 378135 . - 0 ID=Physo157952;Parent=Physo157952;rank=4 scaffold_70 . CDS 378216 378551 . - 0 ID=Physo157952;Parent=Physo157952;rank=3 scaffold_70 . CDS 378663 378703 . - 0 ID=Physo157952;Parent=Physo157952;rank=2 scaffold_70 . CDS 378759 378837 . - 0 ID=Physo157952;Parent=Physo157952;rank=1 scaffold_70 . biological_region 378744 378749 0.999 + . logic_name=eponine scaffold_70 . biological_region 378764 378770 0.999 - . logic_name=eponine scaffold_70 . biological_region 379140 379140 0.999 + . logic_name=eponine scaffold_70 . biological_region 379289 379292 0.999 - . logic_name=eponine scaffold_70 . biological_region 379315 379319 0.999 + . logic_name=eponine scaffold_70 . biological_region 379466 379466 0.999 + . logic_name=eponine scaffold_70 . biological_region 380197 380199 0.999 + . logic_name=eponine scaffold_70 . biological_region 380251 380252 0.999 - . logic_name=eponine scaffold_70 . biological_region 380750 380760 0.999 + . logic_name=eponine scaffold_70 . biological_region 380839 380843 0.999 - . logic_name=eponine scaffold_70 . biological_region 380880 380886 0.999 - . logic_name=eponine scaffold_70 . biological_region 380940 380942 0.999 - . logic_name=eponine scaffold_70 . biological_region 380995 380996 0.999 + . logic_name=eponine scaffold_70 . biological_region 381126 381128 0.999 - . logic_name=eponine scaffold_70 . biological_region 381165 381171 0.999 + . logic_name=eponine scaffold_70 . biological_region 383334 383336 0.999 + . logic_name=eponine scaffold_70 . biological_region 383379 383384 0.999 - . logic_name=eponine scaffold_70 . biological_region 384040 384047 0.999 - . logic_name=eponine scaffold_70 . biological_region 384043 384046 0.999 + . logic_name=eponine scaffold_70 . biological_region 384063 384065 0.999 - . logic_name=eponine scaffold_70 . biological_region 384067 384069 0.999 + . logic_name=eponine scaffold_70 . biological_region 384088 384092 0.999 - . logic_name=eponine scaffold_70 . biological_region 384105 384109 0.999 - . logic_name=eponine scaffold_70 . biological_region 384167 384168 0.999 - . logic_name=eponine scaffold_70 . biological_region 384292 384295 0.999 - . logic_name=eponine scaffold_70 . biological_region 384988 384991 0.999 + . logic_name=eponine scaffold_70 . biological_region 386804 386810 0.999 - . logic_name=eponine scaffold_70 . biological_region 387200 387203 0.999 + . logic_name=eponine scaffold_70 ensembl protein_coding_gene 383997 385946 . + . ID=Physo109190;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_700007;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 383997 385946 . + . ID=Physo109190;Parent=Physo109190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 383997 384065 . + 0 ID=Physo109190;Parent=Physo109190;rank=1 scaffold_70 . exon 383997 384065 . + . ID=Physo109190.1;Parent=Physo109190;constitutive=1;rank=1 scaffold_70 . CDS 384147 385946 . + 0 ID=Physo109190;Parent=Physo109190;rank=2 scaffold_70 . exon 384147 385946 . + . ID=Physo109190.2;Parent=Physo109190;constitutive=1;rank=2 scaffold_70 ensembl protein_coding_gene 380689 381708 . - . ID=Physo139162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700097;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 380689 381708 . - . ID=Physo139162;Parent=Physo139162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 380689 381708 . - 0 ID=Physo139162;Parent=Physo139162;rank=1 scaffold_70 . exon 380689 381708 . - . ID=Physo139162.1;Parent=Physo139162;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 386140 386592 . - . ID=Physo139165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700100;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 386140 386592 . - . ID=Physo139165;Parent=Physo139165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 386140 386415 . - 0 ID=Physo139165;Parent=Physo139165;rank=2 scaffold_70 . exon 386140 386415 . - . ID=Physo139165.2;Parent=Physo139165;constitutive=1;rank=2 scaffold_70 . CDS 386488 386592 . - 0 ID=Physo139165;Parent=Physo139165;rank=1 scaffold_70 . exon 386488 386592 . - . ID=Physo139165.1;Parent=Physo139165;constitutive=1;rank=1 scaffold_70 ensembl protein_coding_gene 387130 387897 . - . ID=Physo139166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_700101;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 387130 387897 . - . ID=Physo139166;Parent=Physo139166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 387130 387879 . - 0 ID=Physo139166;Parent=Physo139166;rank=1 scaffold_70 . exon 387130 387897 . - . ID=Physo139166.1;Parent=Physo139166;constitutive=1;ensembl_phase=-1;rank=1 scaffold_70 . exon 378031 378135 . - . ID=Physo157952.4;Parent=Physo157952;constitutive=1;rank=4 scaffold_70 . exon 378216 378551 . - . ID=Physo157952.3;Parent=Physo157952;constitutive=1;rank=3 scaffold_70 . exon 378663 378703 . - . ID=Physo157952.2;Parent=Physo157952;constitutive=1;ensembl_phase=1;rank=2 scaffold_70 . exon 378759 378837 . - . ID=Physo157952.1;Parent=Physo157952;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 ensembl protein_coding_gene 382011 383723 . + . ID=Physo157954;biotype=protein_coding;external_name=C_scaffold_70000038;logic_name=jgi_physo1_1 scaffold_70 ensembl transcript 382011 383723 . + . ID=Physo157954;Parent=Physo157954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_70 . CDS 382011 382239 . + 0 ID=Physo157954;Parent=Physo157954;rank=1 scaffold_70 . exon 382011 382239 . + . ID=Physo157954.1;Parent=Physo157954;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_70 . CDS 382303 382609 . + 0 ID=Physo157954;Parent=Physo157954;rank=2 scaffold_70 . exon 382303 382609 . + . ID=Physo157954.2;Parent=Physo157954;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_70 . CDS 382643 383234 . + 0 ID=Physo157954;Parent=Physo157954;rank=3 scaffold_70 . exon 382643 383234 . + . ID=Physo157954.3;Parent=Physo157954;constitutive=1;ensembl_phase=2;rank=3 scaffold_70 . CDS 383262 383723 . + 0 ID=Physo157954;Parent=Physo157954;rank=4 scaffold_70 . exon 383262 383723 . + . ID=Physo157954.4;Parent=Physo157954;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_77 1 388351 scaffold_77 . repeat_region 32 853 . ? . description=trf scaffold_77 . repeat_region 854 25443 . ? . description=dust scaffold_77 ensembl protein_coding_gene 36 853 . - . ID=Physo139662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770001;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 36 853 . - . ID=Physo139662;Parent=Physo139662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 36 176 . - 0 ID=Physo139662;Parent=Physo139662;rank=3 scaffold_77 . exon 36 176 . - . ID=Physo139662.3;Parent=Physo139662;constitutive=1;rank=3 scaffold_77 . CDS 225 560 . - 0 ID=Physo139662;Parent=Physo139662;rank=2 scaffold_77 . exon 225 560 . - . ID=Physo139662.2;Parent=Physo139662;constitutive=1;rank=2 scaffold_77 . CDS 620 853 . - 0 ID=Physo139662;Parent=Physo139662;rank=1 scaffold_77 . exon 620 853 . - . ID=Physo139662.1;Parent=Physo139662;constitutive=1;rank=1 scaffold_77 . repeat_region 854 25443 . ? . description=dust scaffold_77 . biological_region 25816 25821 0.999 + . logic_name=eponine scaffold_77 . biological_region 27060 27061 0.999 - . logic_name=eponine scaffold_77 . repeat_region 29646 29874 . ? . description=dust scaffold_77 ensembl protein_coding_gene 27609 28461 . - . ID=Physo139663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770002;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 27609 28461 . - . ID=Physo139663;Parent=Physo139663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 27609 27944 . - 0 ID=Physo139663;Parent=Physo139663;rank=2 scaffold_77 . exon 27609 27944 . - . ID=Physo139663.2;Parent=Physo139663;constitutive=1;rank=2 scaffold_77 . CDS 28294 28461 . - 0 ID=Physo139663;Parent=Physo139663;rank=1 scaffold_77 . exon 28294 28461 . - . ID=Physo139663.1;Parent=Physo139663;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 37405 38382 . + . ID=Physo139664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770003;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 37405 38382 . + . ID=Physo139664;Parent=Physo139664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 37405 37754 . + 0 ID=Physo139664;Parent=Physo139664;rank=1 scaffold_77 . exon 37405 37754 . + . ID=Physo139664.1;Parent=Physo139664;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 . CDS 37871 38319 . + 0 ID=Physo139664;Parent=Physo139664;rank=2 scaffold_77 . exon 37871 38319 . + . ID=Physo139664.2;Parent=Physo139664;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_77 . CDS 38351 38382 . + 0 ID=Physo139664;Parent=Physo139664;rank=3 scaffold_77 . exon 38351 38382 . + . ID=Physo139664.3;Parent=Physo139664;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 . repeat_region 38669 59748 . ? . description=dust scaffold_77 . repeat_region 59749 62488 . ? . description=dust scaffold_77 . biological_region 62820 62823 0.999 + . logic_name=eponine scaffold_77 . repeat_region 63488 63546 . ? . description=trf scaffold_77 . repeat_region 63897 64285 . ? . description=dust scaffold_77 . repeat_region 64865 64899 . ? . description=trf scaffold_77 . repeat_region 64871 64932 . ? . description=dust scaffold_77 . repeat_region 64881 64932 . ? . description=trf scaffold_77 . biological_region 65199 65201 0.999 + . logic_name=eponine scaffold_77 . repeat_region 65218 65267 . ? . description=dust scaffold_77 . biological_region 65333 65335 0.999 + . logic_name=eponine scaffold_77 . repeat_region 66063 66087 . ? . description=trf scaffold_77 . biological_region 66250 66255 0.999 - . logic_name=eponine scaffold_77 . biological_region 69302 69303 0.999 - . logic_name=eponine scaffold_77 . repeat_region 69314 69486 . ? . description=trf scaffold_77 . biological_region 69339 69340 0.999 + . logic_name=eponine scaffold_77 . biological_region 69382 69382 0.999 - . logic_name=eponine scaffold_77 . biological_region 69400 69405 0.999 - . logic_name=eponine scaffold_77 ensembl protein_coding_gene 62489 65207 . - . ID=Physo139665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770004;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 62489 65207 . - . ID=Physo139665;Parent=Physo139665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . exon 62489 63770 . - . ID=Physo139665.2;Parent=Physo139665;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_77 . CDS 62555 63770 . - 0 ID=Physo139665;Parent=Physo139665;rank=2 scaffold_77 . CDS 64294 65207 . - 0 ID=Physo139665;Parent=Physo139665;rank=1 scaffold_77 . exon 64294 65207 . - . ID=Physo139665.1;Parent=Physo139665;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 ensembl protein_coding_gene 67167 68345 . + . ID=Physo139666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770005;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 67167 68345 . + . ID=Physo139666;Parent=Physo139666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 67167 68345 . + 0 ID=Physo139666;Parent=Physo139666;rank=1 scaffold_77 . exon 67167 68345 . + . ID=Physo139666.1;Parent=Physo139666;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 70978 71982 . - . ID=Physo139667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770006;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 70978 71982 . - . ID=Physo139667;Parent=Physo139667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 70978 71982 . - 0 ID=Physo139667;Parent=Physo139667;rank=1 scaffold_77 . exon 70978 71982 . - . ID=Physo139667.1;Parent=Physo139667;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 73238 74304 . - . ID=Physo139668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770007;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 73238 74304 . - . ID=Physo139668;Parent=Physo139668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . exon 73238 74304 . - . ID=Physo139668.1;Parent=Physo139668;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_77 . CDS 73249 74304 . - 0 ID=Physo139668;Parent=Physo139668;rank=1 scaffold_77 ensembl protein_coding_gene 75555 79005 . + . ID=Physo139669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770008;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 75555 79005 . + . ID=Physo139669;Parent=Physo139669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 75555 78521 . + 0 ID=Physo139669;Parent=Physo139669;rank=1 scaffold_77 . exon 75555 78521 . + . ID=Physo139669.1;Parent=Physo139669;constitutive=1;rank=1 scaffold_77 . CDS 78596 78973 . + 0 ID=Physo139669;Parent=Physo139669;rank=2 scaffold_77 . exon 78596 79005 . + . ID=Physo139669.2;Parent=Physo139669;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_77 . biological_region 80317 80320 0.999 + . logic_name=eponine scaffold_77 . repeat_region 81118 81147 . ? . description=trf scaffold_77 . biological_region 81714 81718 0.999 + . logic_name=eponine scaffold_77 . biological_region 82825 82830 0.999 + . logic_name=eponine scaffold_77 . biological_region 82844 82849 0.999 + . logic_name=eponine scaffold_77 . biological_region 82877 82879 0.999 - . logic_name=eponine scaffold_77 . repeat_region 83256 83283 . ? . description=trf scaffold_77 . biological_region 83508 83509 0.999 + . logic_name=eponine scaffold_77 . biological_region 84011 84015 0.999 - . logic_name=eponine scaffold_77 . biological_region 88757 88760 0.999 - . logic_name=eponine scaffold_77 . biological_region 88959 88959 0.999 + . logic_name=eponine scaffold_77 ensembl protein_coding_gene 79776 87021 . + . ID=Physo139670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770009;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 79776 87021 . + . ID=Physo139670;Parent=Physo139670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 79776 80240 . + 0 ID=Physo139670;Parent=Physo139670;rank=1 scaffold_77 . exon 79776 80240 . + . ID=Physo139670.1;Parent=Physo139670;constitutive=1;rank=1 scaffold_77 . CDS 80511 80523 . + 0 ID=Physo139670;Parent=Physo139670;rank=2 scaffold_77 . exon 80511 80523 . + . ID=Physo139670.2;Parent=Physo139670;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_77 . CDS 80860 81353 . + 0 ID=Physo139670;Parent=Physo139670;rank=3 scaffold_77 . exon 80860 81353 . + . ID=Physo139670.3;Parent=Physo139670;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 . CDS 81410 82153 . + 0 ID=Physo139670;Parent=Physo139670;rank=4 scaffold_77 . exon 81410 82153 . + . ID=Physo139670.4;Parent=Physo139670;constitutive=1;rank=4 scaffold_77 . CDS 82295 82645 . + 0 ID=Physo139670;Parent=Physo139670;rank=5 scaffold_77 . exon 82295 82645 . + . ID=Physo139670.5;Parent=Physo139670;constitutive=1;rank=5 scaffold_77 . CDS 82756 83139 . + 0 ID=Physo139670;Parent=Physo139670;rank=6 scaffold_77 . exon 82756 83139 . + . ID=Physo139670.6;Parent=Physo139670;constitutive=1;rank=6 scaffold_77 . CDS 83235 83547 . + 0 ID=Physo139670;Parent=Physo139670;rank=7 scaffold_77 . exon 83235 83547 . + . ID=Physo139670.7;Parent=Physo139670;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_77 . CDS 83600 84410 . + 0 ID=Physo139670;Parent=Physo139670;rank=8 scaffold_77 . exon 83600 84410 . + . ID=Physo139670.8;Parent=Physo139670;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_77 . CDS 84467 85411 . + 0 ID=Physo139670;Parent=Physo139670;rank=9 scaffold_77 . exon 84467 85411 . + . ID=Physo139670.9;Parent=Physo139670;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_77 . CDS 85520 85691 . + 0 ID=Physo139670;Parent=Physo139670;rank=10 scaffold_77 . exon 85520 85691 . + . ID=Physo139670.10;Parent=Physo139670;constitutive=1;ensembl_phase=2;rank=10 scaffold_77 . CDS 85715 86287 . + 0 ID=Physo139670;Parent=Physo139670;rank=11 scaffold_77 . exon 85715 86287 . + . ID=Physo139670.11;Parent=Physo139670;constitutive=1;rank=11 scaffold_77 . CDS 86345 86890 . + 0 ID=Physo139670;Parent=Physo139670;rank=12 scaffold_77 . exon 86345 87021 . + . ID=Physo139670.12;Parent=Physo139670;constitutive=1;ensembl_end_phase=-1;rank=12 scaffold_77 ensembl protein_coding_gene 88257 89129 . + . ID=Physo139671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770010;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 88257 89129 . + . ID=Physo139671;Parent=Physo139671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 88257 88780 . + 0 ID=Physo139671;Parent=Physo139671;rank=1 scaffold_77 . exon 88257 88780 . + . ID=Physo139671.1;Parent=Physo139671;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 . CDS 88850 89129 . + 0 ID=Physo139671;Parent=Physo139671;rank=2 scaffold_77 . exon 88850 89129 . + . ID=Physo139671.2;Parent=Physo139671;constitutive=1;ensembl_phase=2;rank=2 scaffold_77 ensembl protein_coding_gene 89965 90801 . + . ID=Physo139672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770011;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 89965 90801 . + . ID=Physo139672;Parent=Physo139672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 89965 90801 . + 0 ID=Physo139672;Parent=Physo139672;rank=1 scaffold_77 . exon 89965 90801 . + . ID=Physo139672.1;Parent=Physo139672;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 91427 93424 . + . ID=Physo139673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770012;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 91427 93424 . + . ID=Physo139673;Parent=Physo139673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 91427 93424 . + 0 ID=Physo139673;Parent=Physo139673;rank=1 scaffold_77 . exon 91427 93424 . + . ID=Physo139673.1;Parent=Physo139673;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 96220 97388 . + . ID=Physo139674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770013;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 96220 97388 . + . ID=Physo139674;Parent=Physo139674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 96220 96729 . + 0 ID=Physo139674;Parent=Physo139674;rank=1 scaffold_77 . exon 96220 96729 . + . ID=Physo139674.1;Parent=Physo139674;constitutive=1;rank=1 scaffold_77 . CDS 96867 96918 . + 0 ID=Physo139674;Parent=Physo139674;rank=2 scaffold_77 . exon 96867 96918 . + . ID=Physo139674.2;Parent=Physo139674;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_77 . CDS 96979 97388 . + 0 ID=Physo139674;Parent=Physo139674;rank=3 scaffold_77 . exon 96979 97388 . + . ID=Physo139674.3;Parent=Physo139674;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 ensembl protein_coding_gene 98782 99222 . + . ID=Physo139675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770014;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 98782 99222 . + . ID=Physo139675;Parent=Physo139675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 98782 99222 . + 0 ID=Physo139675;Parent=Physo139675;rank=1 scaffold_77 . exon 98782 99222 . + . ID=Physo139675.1;Parent=Physo139675;constitutive=1;rank=1 scaffold_77 . repeat_region 99920 99956 . ? . description=trf scaffold_77 . repeat_region 100849 100858 . ? . description=dust scaffold_77 . repeat_region 102039 102090 . ? . description=trf scaffold_77 . repeat_region 102952 102959 . ? . description=dust scaffold_77 . repeat_region 103540 103873 . ? . description=trf scaffold_77 . repeat_region 104621 104670 . ? . description=dust scaffold_77 . repeat_region 108902 108940 . ? . description=trf scaffold_77 ensembl protein_coding_gene 106311 107954 . - . ID=Physo139676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770015;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 106311 107954 . - . ID=Physo139676;Parent=Physo139676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 106311 106542 . - 0 ID=Physo139676;Parent=Physo139676;rank=7 scaffold_77 . exon 106311 106542 . - . ID=Physo139676.7;Parent=Physo139676;constitutive=1;ensembl_phase=2;rank=7 scaffold_77 . CDS 106608 106633 . - 0 ID=Physo139676;Parent=Physo139676;rank=6 scaffold_77 . exon 106608 106633 . - . ID=Physo139676.6;Parent=Physo139676;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_77 . CDS 106709 106738 . - 0 ID=Physo139676;Parent=Physo139676;rank=5 scaffold_77 . exon 106709 106738 . - . ID=Physo139676.5;Parent=Physo139676;constitutive=1;rank=5 scaffold_77 . CDS 106846 107057 . - 0 ID=Physo139676;Parent=Physo139676;rank=4 scaffold_77 . exon 106846 107057 . - . ID=Physo139676.4;Parent=Physo139676;constitutive=1;ensembl_phase=1;rank=4 scaffold_77 . CDS 107400 107590 . - 0 ID=Physo139676;Parent=Physo139676;rank=3 scaffold_77 . exon 107400 107590 . - . ID=Physo139676.3;Parent=Physo139676;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_77 . CDS 107662 107852 . - 0 ID=Physo139676;Parent=Physo139676;rank=2 scaffold_77 . exon 107662 107852 . - . ID=Physo139676.2;Parent=Physo139676;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_77 . CDS 107913 107954 . - 0 ID=Physo139676;Parent=Physo139676;rank=1 scaffold_77 . exon 107913 107954 . - . ID=Physo139676.1;Parent=Physo139676;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 109501 110469 . - . ID=Physo139677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770016;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 109501 110469 . - . ID=Physo139677;Parent=Physo139677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 109501 110024 . - 0 ID=Physo139677;Parent=Physo139677;rank=3 scaffold_77 . exon 109501 110024 . - . ID=Physo139677.3;Parent=Physo139677;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 . CDS 110079 110246 . - 0 ID=Physo139677;Parent=Physo139677;rank=2 scaffold_77 . CDS 110418 110469 . - 0 ID=Physo139677;Parent=Physo139677;rank=1 scaffold_77 . biological_region 110702 110705 0.999 + . logic_name=eponine scaffold_77 . biological_region 111298 111302 0.999 - . logic_name=eponine scaffold_77 . biological_region 111332 111336 0.999 - . logic_name=eponine scaffold_77 . biological_region 111742 111745 0.999 - . logic_name=eponine scaffold_77 . biological_region 111748 111751 0.999 + . logic_name=eponine scaffold_77 . biological_region 114121 114123 0.999 - . logic_name=eponine scaffold_77 . biological_region 118891 118892 0.999 + . logic_name=eponine scaffold_77 ensembl protein_coding_gene 118177 120120 . - . ID=Physo109228;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_770001;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 118177 120120 . - . ID=Physo109228;Parent=Physo109228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 118177 119760 . - 0 ID=Physo109228;Parent=Physo109228;rank=1 scaffold_77 . exon 118177 120120 . - . ID=Physo109228.1;Parent=Physo109228;constitutive=1;ensembl_phase=-1;rank=1 scaffold_77 . exon 110079 110246 . - . ID=Physo139677.2;Parent=Physo139677;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_77 . exon 110418 110469 . - . ID=Physo139677.1;Parent=Physo139677;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 ensembl protein_coding_gene 111917 117997 . + . ID=Physo158025;biotype=protein_coding;external_name=C_scaffold_77000002;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 111917 117997 . + . ID=Physo158025;Parent=Physo158025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 111917 112141 . + 0 ID=Physo158025;Parent=Physo158025;rank=1 scaffold_77 . exon 111917 112141 . + . ID=Physo158025.1;Parent=Physo158025;constitutive=1;rank=1 scaffold_77 . CDS 112163 112968 . + 0 ID=Physo158025;Parent=Physo158025;rank=2 scaffold_77 . exon 112163 112968 . + . ID=Physo158025.2;Parent=Physo158025;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_77 . CDS 113002 113197 . + 0 ID=Physo158025;Parent=Physo158025;rank=3 scaffold_77 . exon 113002 113197 . + . ID=Physo158025.3;Parent=Physo158025;constitutive=1;ensembl_phase=2;rank=3 scaffold_77 . CDS 113280 113350 . + 0 ID=Physo158025;Parent=Physo158025;rank=4 scaffold_77 . exon 113280 113350 . + . ID=Physo158025.4;Parent=Physo158025;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_77 . CDS 113635 113660 . + 0 ID=Physo158025;Parent=Physo158025;rank=5 scaffold_77 . exon 113635 113660 . + . ID=Physo158025.5;Parent=Physo158025;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_77 . CDS 114066 114266 . + 0 ID=Physo158025;Parent=Physo158025;rank=6 scaffold_77 . exon 114066 114266 . + . ID=Physo158025.6;Parent=Physo158025;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_77 . CDS 114321 114717 . + 0 ID=Physo158025;Parent=Physo158025;rank=7 scaffold_77 . exon 114321 114717 . + . ID=Physo158025.7;Parent=Physo158025;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_77 . CDS 115626 115843 . + 0 ID=Physo158025;Parent=Physo158025;rank=8 scaffold_77 . exon 115626 115843 . + . ID=Physo158025.8;Parent=Physo158025;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_77 . CDS 115941 116238 . + 0 ID=Physo158025;Parent=Physo158025;rank=9 scaffold_77 . exon 115941 116238 . + . ID=Physo158025.9;Parent=Physo158025;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_77 . CDS 116323 116755 . + 0 ID=Physo158025;Parent=Physo158025;rank=10 scaffold_77 . exon 116323 116755 . + . ID=Physo158025.10;Parent=Physo158025;constitutive=1;ensembl_phase=2;rank=10 scaffold_77 . CDS 116891 117226 . + 0 ID=Physo158025;Parent=Physo158025;rank=11 scaffold_77 . exon 116891 117226 . + . ID=Physo158025.11;Parent=Physo158025;constitutive=1;rank=11 scaffold_77 . CDS 117302 117691 . + 0 ID=Physo158025;Parent=Physo158025;rank=12 scaffold_77 . exon 117302 117691 . + . ID=Physo158025.12;Parent=Physo158025;constitutive=1;rank=12 scaffold_77 . CDS 117974 117997 . + 0 ID=Physo158025;Parent=Physo158025;rank=13 scaffold_77 . exon 117974 117997 . + . ID=Physo158025.13;Parent=Physo158025;constitutive=1;rank=13 scaffold_77 . repeat_region 125618 125651 . ? . description=trf scaffold_77 . repeat_region 126458 126517 . ? . description=trf scaffold_77 . repeat_region 126916 127409 . ? . description=trf scaffold_77 ensembl protein_coding_gene 123510 125073 . - . ID=Physo139682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770021;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 123510 125073 . - . ID=Physo139682;Parent=Physo139682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 123510 124009 . - 0 ID=Physo139682;Parent=Physo139682;rank=4 scaffold_77 . exon 123510 124009 . - . ID=Physo139682.4;Parent=Physo139682;constitutive=1;ensembl_phase=1;rank=4 scaffold_77 . CDS 124046 124695 . - 0 ID=Physo139682;Parent=Physo139682;rank=3 scaffold_77 . exon 124046 124695 . - . ID=Physo139682.3;Parent=Physo139682;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_77 . CDS 124788 124891 . - 0 ID=Physo139682;Parent=Physo139682;rank=2 scaffold_77 . exon 124788 124891 . - . ID=Physo139682.2;Parent=Physo139682;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_77 . CDS 124993 125073 . - 0 ID=Physo139682;Parent=Physo139682;rank=1 scaffold_77 . exon 124993 125073 . - . ID=Physo139682.1;Parent=Physo139682;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 125327 128208 . - . ID=Physo139683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770022;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 125327 128208 . - . ID=Physo139683;Parent=Physo139683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 125327 126844 . - 0 ID=Physo139683;Parent=Physo139683;rank=2 scaffold_77 . exon 125327 126844 . - . ID=Physo139683.2;Parent=Physo139683;constitutive=1;rank=2 scaffold_77 . CDS 126904 128208 . - 0 ID=Physo139683;Parent=Physo139683;rank=1 scaffold_77 . exon 126904 128208 . - . ID=Physo139683.1;Parent=Physo139683;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 129340 130537 . - . ID=Physo139684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770023;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 129340 130537 . - . ID=Physo139684;Parent=Physo139684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 129340 130401 . - 0 ID=Physo139684;Parent=Physo139684;rank=2 scaffold_77 . exon 129340 130401 . - . ID=Physo139684.2;Parent=Physo139684;constitutive=1;rank=2 scaffold_77 . CDS 130472 130537 . - 0 ID=Physo139684;Parent=Physo139684;rank=1 scaffold_77 ensembl protein_coding_gene 122410 123017 . - . ID=Physo158026;biotype=protein_coding;external_name=C_scaffold_77000003;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 122410 123017 . - . ID=Physo158026;Parent=Physo158026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 122410 122786 . - 0 ID=Physo158026;Parent=Physo158026;rank=2 scaffold_77 . exon 122410 122786 . - . ID=Physo158026.2;Parent=Physo158026;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 122858 123017 . - 0 ID=Physo158026;Parent=Physo158026;rank=1 scaffold_77 . exon 122858 123017 . - . ID=Physo158026.1;Parent=Physo158026;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . biological_region 129835 129836 0.999 - . logic_name=eponine scaffold_77 . repeat_region 131117 131133 . ? . description=dust scaffold_77 . repeat_region 131317 131410 . ? . description=dust scaffold_77 . biological_region 132506 132510 0.999 + . logic_name=eponine scaffold_77 . biological_region 132605 132609 0.999 + . logic_name=eponine scaffold_77 . biological_region 132614 132616 0.999 - . logic_name=eponine scaffold_77 . biological_region 133764 133768 0.999 - . logic_name=eponine scaffold_77 . biological_region 133863 133868 0.999 - . logic_name=eponine scaffold_77 . repeat_region 136697 136704 . ? . description=dust scaffold_77 . exon 130472 130537 . - . ID=Physo139684.1;Parent=Physo139684;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 131434 132749 . - . ID=Physo139685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770024;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 131434 132749 . - . ID=Physo139685;Parent=Physo139685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . exon 131434 132749 . - . ID=Physo139685.1;Parent=Physo139685;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_77 . CDS 131785 132747 . - 0 ID=Physo139685;Parent=Physo139685;rank=1 scaffold_77 ensembl pseudogene 134258 134827 . + . ID=Physo139686;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_770025;logic_name=jgi_physo1_1 scaffold_77 ensembl pseudogene 134258 134827 . + . ID=Physo139686;Parent=Physo139686;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_77 . exon 134258 134397 . + . ID=Physo139686.1;Parent=Physo139686;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_77 . exon 134421 134827 . + . ID=Physo139686.2;Parent=Physo139686;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 ensembl protein_coding_gene 137554 138690 . + . ID=Physo139687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770026;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 137554 138690 . + . ID=Physo139687;Parent=Physo139687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 137554 138690 . + 0 ID=Physo139687;Parent=Physo139687;rank=1 scaffold_77 . exon 137554 138690 . + . ID=Physo139687.1;Parent=Physo139687;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 139037 140456 . - . ID=Physo139688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770027;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 139037 140456 . - . ID=Physo139688;Parent=Physo139688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 139037 139253 . - 0 ID=Physo139688;Parent=Physo139688;rank=4 scaffold_77 . exon 139037 139253 . - . ID=Physo139688.4;Parent=Physo139688;constitutive=1;ensembl_phase=2;rank=4 scaffold_77 . CDS 139322 139827 . - 0 ID=Physo139688;Parent=Physo139688;rank=3 scaffold_77 . exon 139322 139827 . - . ID=Physo139688.3;Parent=Physo139688;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_77 . CDS 139893 140228 . - 0 ID=Physo139688;Parent=Physo139688;rank=2 scaffold_77 . CDS 140313 140456 . - 0 ID=Physo139688;Parent=Physo139688;rank=1 scaffold_77 . exon 139893 140228 . - . ID=Physo139688.2;Parent=Physo139688;constitutive=1;rank=2 scaffold_77 . exon 140313 140456 . - . ID=Physo139688.1;Parent=Physo139688;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 140880 142152 . + . ID=Physo139689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770028;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 140880 142152 . + . ID=Physo139689;Parent=Physo139689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 140880 142017 . + 0 ID=Physo139689;Parent=Physo139689;rank=1 scaffold_77 . exon 140880 142017 . + . ID=Physo139689.1;Parent=Physo139689;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . CDS 142091 142152 . + 0 ID=Physo139689;Parent=Physo139689;rank=2 scaffold_77 . exon 142091 142152 . + . ID=Physo139689.2;Parent=Physo139689;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 ensembl protein_coding_gene 142602 143744 . - . ID=Physo139690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770029;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 142602 143744 . - . ID=Physo139690;Parent=Physo139690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 142602 143744 . - 0 ID=Physo139690;Parent=Physo139690;rank=1 scaffold_77 . exon 142602 143744 . - . ID=Physo139690.1;Parent=Physo139690;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 144657 145817 . - . ID=Physo139691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770030;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 144657 145817 . - . ID=Physo139691;Parent=Physo139691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 144657 145817 . - 0 ID=Physo139691;Parent=Physo139691;rank=1 scaffold_77 . exon 144657 145817 . - . ID=Physo139691.1;Parent=Physo139691;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 146518 150711 . - . ID=Physo139692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770031;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 146518 150711 . - . ID=Physo139692;Parent=Physo139692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 146518 150711 . - 0 ID=Physo139692;Parent=Physo139692;rank=1 scaffold_77 . exon 146518 150711 . - . ID=Physo139692.1;Parent=Physo139692;constitutive=1;rank=1 scaffold_77 . biological_region 153554 153557 0.999 + . logic_name=eponine scaffold_77 . biological_region 154559 154562 0.999 + . logic_name=eponine scaffold_77 . repeat_region 158056 158063 . ? . description=dust scaffold_77 . repeat_region 158879 158886 . ? . description=dust scaffold_77 ensembl protein_coding_gene 155962 157591 . - . ID=Physo139693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770032;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 155962 157591 . - . ID=Physo139693;Parent=Physo139693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 155962 156067 . - 0 ID=Physo139693;Parent=Physo139693;rank=4 scaffold_77 . exon 155962 156067 . - . ID=Physo139693.4;Parent=Physo139693;constitutive=1;ensembl_phase=2;rank=4 scaffold_77 . CDS 156144 157243 . - 0 ID=Physo139693;Parent=Physo139693;rank=3 scaffold_77 . exon 156144 157243 . - . ID=Physo139693.3;Parent=Physo139693;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_77 . CDS 157317 157489 . - 0 ID=Physo139693;Parent=Physo139693;rank=2 scaffold_77 . exon 157317 157489 . - . ID=Physo139693.2;Parent=Physo139693;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 157555 157591 . - 0 ID=Physo139693;Parent=Physo139693;rank=1 scaffold_77 . exon 157555 157591 . - . ID=Physo139693.1;Parent=Physo139693;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . repeat_region 160691 160723 . ? . description=trf scaffold_77 ensembl protein_coding_gene 160936 161955 . - . ID=Physo139694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770033;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 160936 161955 . - . ID=Physo139694;Parent=Physo139694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 160936 161913 . - 0 ID=Physo139694;Parent=Physo139694;rank=1 scaffold_77 . exon 160936 161955 . - . ID=Physo139694.1;Parent=Physo139694;constitutive=1;ensembl_phase=-1;rank=1 scaffold_77 ensembl protein_coding_gene 163279 164748 . - . ID=Physo139695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770034;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 163279 164748 . - . ID=Physo139695;Parent=Physo139695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 163279 164304 . - 0 ID=Physo139695;Parent=Physo139695;rank=3 scaffold_77 . exon 163279 164304 . - . ID=Physo139695.3;Parent=Physo139695;constitutive=1;rank=3 scaffold_77 . CDS 164470 164648 . - 0 ID=Physo139695;Parent=Physo139695;rank=2 scaffold_77 . exon 164470 164648 . - . ID=Physo139695.2;Parent=Physo139695;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 164724 164748 . - 0 ID=Physo139695;Parent=Physo139695;rank=1 scaffold_77 . exon 164724 164748 . - . ID=Physo139695.1;Parent=Physo139695;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 ensembl protein_coding_gene 165471 170986 . - . ID=Physo139696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770035;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 165471 170986 . - . ID=Physo139696;Parent=Physo139696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 165471 165579 . - 0 ID=Physo139696;Parent=Physo139696;rank=14 scaffold_77 . exon 165471 165579 . - . ID=Physo139696.14;Parent=Physo139696;constitutive=1;ensembl_phase=2;rank=14 scaffold_77 . CDS 165654 165817 . - 0 ID=Physo139696;Parent=Physo139696;rank=13 scaffold_77 . exon 165654 165817 . - . ID=Physo139696.13;Parent=Physo139696;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_77 . CDS 165870 166763 . - 0 ID=Physo139696;Parent=Physo139696;rank=12 scaffold_77 . exon 165870 166763 . - . ID=Physo139696.12;Parent=Physo139696;constitutive=1;rank=12 scaffold_77 . CDS 166846 167018 . - 0 ID=Physo139696;Parent=Physo139696;rank=11 scaffold_77 . exon 166846 167018 . - . ID=Physo139696.11;Parent=Physo139696;constitutive=1;ensembl_phase=1;rank=11 scaffold_77 . CDS 167081 167117 . - 0 ID=Physo139696;Parent=Physo139696;rank=10 scaffold_77 . exon 167081 167117 . - . ID=Physo139696.10;Parent=Physo139696;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_77 . CDS 167375 167444 . - 0 ID=Physo139696;Parent=Physo139696;rank=9 scaffold_77 . exon 167375 167444 . - . ID=Physo139696.9;Parent=Physo139696;constitutive=1;ensembl_phase=2;rank=9 scaffold_77 . CDS 167516 168633 . - 0 ID=Physo139696;Parent=Physo139696;rank=8 scaffold_77 . exon 167516 168633 . - . ID=Physo139696.8;Parent=Physo139696;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_77 . CDS 168699 168871 . - 0 ID=Physo139696;Parent=Physo139696;rank=7 scaffold_77 . exon 168699 168871 . - . ID=Physo139696.7;Parent=Physo139696;constitutive=1;ensembl_phase=1;rank=7 scaffold_77 . CDS 168953 169007 . - 0 ID=Physo139696;Parent=Physo139696;rank=6 scaffold_77 . exon 168953 169007 . - . ID=Physo139696.6;Parent=Physo139696;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_77 . CDS 169148 169223 . - 0 ID=Physo139696;Parent=Physo139696;rank=5 scaffold_77 . exon 169148 169223 . - . ID=Physo139696.5;Parent=Physo139696;constitutive=1;ensembl_phase=2;rank=5 scaffold_77 . CDS 169376 169462 . - 0 ID=Physo139696;Parent=Physo139696;rank=4 scaffold_77 . CDS 169533 170641 . - 0 ID=Physo139696;Parent=Physo139696;rank=3 scaffold_77 . CDS 170706 170884 . - 0 ID=Physo139696;Parent=Physo139696;rank=2 scaffold_77 . CDS 170950 170986 . - 0 ID=Physo139696;Parent=Physo139696;rank=1 scaffold_77 . biological_region 169344 169346 0.999 + . logic_name=eponine scaffold_77 . biological_region 173675 173676 0.999 - . logic_name=eponine scaffold_77 . repeat_region 173708 173716 . ? . description=dust scaffold_77 . repeat_region 175223 175235 . ? . description=dust scaffold_77 . repeat_region 178128 178143 . ? . description=dust scaffold_77 . exon 169376 169462 . - . ID=Physo139696.4;Parent=Physo139696;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_77 . exon 169533 170641 . - . ID=Physo139696.3;Parent=Physo139696;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_77 . exon 170706 170884 . - . ID=Physo139696.2;Parent=Physo139696;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 . exon 170950 170986 . - . ID=Physo139696.1;Parent=Physo139696;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . repeat_region 179772 179807 . ? . description=trf scaffold_77 ensembl protein_coding_gene 181019 181870 . - . ID=Physo109229;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_770002;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 181019 181870 . - . ID=Physo109229;Parent=Physo109229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 181019 181870 . - 0 ID=Physo109229;Parent=Physo109229;rank=1 scaffold_77 . exon 181019 181870 . - . ID=Physo109229.1;Parent=Physo109229;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 182007 184266 . - . ID=Physo139698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770037;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 182007 184266 . - . ID=Physo139698;Parent=Physo139698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 182007 182350 . - 0 ID=Physo139698;Parent=Physo139698;rank=4 scaffold_77 . exon 182007 182350 . - . ID=Physo139698.4;Parent=Physo139698;constitutive=1;ensembl_phase=1;rank=4 scaffold_77 . CDS 182371 183452 . - 0 ID=Physo139698;Parent=Physo139698;rank=3 scaffold_77 . exon 182371 183452 . - . ID=Physo139698.3;Parent=Physo139698;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_77 . CDS 183670 184049 . - 0 ID=Physo139698;Parent=Physo139698;rank=2 scaffold_77 . exon 183670 184049 . - . ID=Physo139698.2;Parent=Physo139698;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_77 . CDS 184069 184266 . - 0 ID=Physo139698;Parent=Physo139698;rank=1 scaffold_77 . exon 184069 184266 . - . ID=Physo139698.1;Parent=Physo139698;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 184876 186925 . + . ID=Physo139699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770038;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 184876 186925 . + . ID=Physo139699;Parent=Physo139699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 184876 185307 . + 0 ID=Physo139699;Parent=Physo139699;rank=1 scaffold_77 . exon 184876 185307 . + . ID=Physo139699.1;Parent=Physo139699;constitutive=1;rank=1 scaffold_77 . CDS 185444 185463 . + 0 ID=Physo139699;Parent=Physo139699;rank=2 scaffold_77 . exon 185444 185463 . + . ID=Physo139699.2;Parent=Physo139699;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_77 . CDS 185525 186014 . + 0 ID=Physo139699;Parent=Physo139699;rank=3 scaffold_77 . exon 185525 186014 . + . ID=Physo139699.3;Parent=Physo139699;constitutive=1;ensembl_phase=2;rank=3 scaffold_77 . CDS 186080 186305 . + 0 ID=Physo139699;Parent=Physo139699;rank=4 scaffold_77 . exon 186080 186305 . + . ID=Physo139699.4;Parent=Physo139699;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_77 . CDS 186363 186433 . + 0 ID=Physo139699;Parent=Physo139699;rank=5 scaffold_77 . exon 186363 186433 . + . ID=Physo139699.5;Parent=Physo139699;constitutive=1;ensembl_phase=1;rank=5 scaffold_77 . CDS 186508 186654 . + 0 ID=Physo139699;Parent=Physo139699;rank=6 scaffold_77 . exon 186508 186654 . + . ID=Physo139699.6;Parent=Physo139699;constitutive=1;rank=6 scaffold_77 . CDS 186875 186925 . + 0 ID=Physo139699;Parent=Physo139699;rank=7 scaffold_77 . exon 186875 186925 . + . ID=Physo139699.7;Parent=Physo139699;constitutive=1;rank=7 scaffold_77 ensembl protein_coding_gene 187939 188486 . - . ID=Physo139700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770039;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 187939 188486 . - . ID=Physo139700;Parent=Physo139700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 187939 187949 . - 0 ID=Physo139700;Parent=Physo139700;rank=2 scaffold_77 . exon 187939 187949 . - . ID=Physo139700.2;Parent=Physo139700;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 187979 188486 . - 0 ID=Physo139700;Parent=Physo139700;rank=1 scaffold_77 . exon 187979 188486 . - . ID=Physo139700.1;Parent=Physo139700;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . repeat_region 196502 196516 . ? . description=dust scaffold_77 ensembl protein_coding_gene 191710 192393 . + . ID=Physo139701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770040;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 191710 192393 . + . ID=Physo139701;Parent=Physo139701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 191710 192393 . + 0 ID=Physo139701;Parent=Physo139701;rank=1 scaffold_77 . exon 191710 192393 . + . ID=Physo139701.1;Parent=Physo139701;constitutive=1;rank=1 scaffold_77 . biological_region 201399 201401 0.999 - . logic_name=eponine scaffold_77 . biological_region 202452 202454 0.999 + . logic_name=eponine scaffold_77 . biological_region 202587 202596 0.999 - . logic_name=eponine scaffold_77 . biological_region 202608 202610 0.999 + . logic_name=eponine scaffold_77 . biological_region 203096 203103 0.999 - . logic_name=eponine scaffold_77 . repeat_region 203187 203328 . ? . description=trf scaffold_77 . repeat_region 203190 203328 . ? . description=trf scaffold_77 . biological_region 203407 203409 0.999 - . logic_name=eponine scaffold_77 . biological_region 203853 203855 0.999 + . logic_name=eponine scaffold_77 . biological_region 204246 204251 0.999 + . logic_name=eponine scaffold_77 . biological_region 204887 204892 0.999 + . logic_name=eponine scaffold_77 . biological_region 206596 206596 0.999 + . logic_name=eponine scaffold_77 . biological_region 207129 207131 0.999 + . logic_name=eponine scaffold_77 . biological_region 207590 207594 0.999 + . logic_name=eponine scaffold_77 . biological_region 208166 208169 0.999 + . logic_name=eponine scaffold_77 ensembl protein_coding_gene 200990 208798 . + . ID=Physo139702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770041;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 200990 208798 . + . ID=Physo139702;Parent=Physo139702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 200990 202752 . + 0 ID=Physo139702;Parent=Physo139702;rank=1 scaffold_77 . exon 200990 202752 . + . ID=Physo139702.1;Parent=Physo139702;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 . CDS 202774 202858 . + 0 ID=Physo139702;Parent=Physo139702;rank=2 scaffold_77 . exon 202774 202858 . + . ID=Physo139702.2;Parent=Physo139702;constitutive=1;ensembl_phase=2;rank=2 scaffold_77 . CDS 202879 203364 . + 0 ID=Physo139702;Parent=Physo139702;rank=3 scaffold_77 . exon 202879 203364 . + . ID=Physo139702.3;Parent=Physo139702;constitutive=1;rank=3 scaffold_77 . CDS 203437 203680 . + 0 ID=Physo139702;Parent=Physo139702;rank=4 scaffold_77 . exon 203437 203680 . + . ID=Physo139702.4;Parent=Physo139702;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_77 . CDS 203767 203885 . + 0 ID=Physo139702;Parent=Physo139702;rank=5 scaffold_77 . exon 203767 203885 . + . ID=Physo139702.5;Parent=Physo139702;constitutive=1;ensembl_phase=1;rank=5 scaffold_77 . CDS 203939 204092 . + 0 ID=Physo139702;Parent=Physo139702;rank=6 scaffold_77 . exon 203939 204092 . + . ID=Physo139702.6;Parent=Physo139702;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_77 . CDS 204430 204491 . + 0 ID=Physo139702;Parent=Physo139702;rank=7 scaffold_77 . exon 204430 204491 . + . ID=Physo139702.7;Parent=Physo139702;constitutive=1;ensembl_phase=1;rank=7 scaffold_77 . CDS 204513 204653 . + 0 ID=Physo139702;Parent=Physo139702;rank=8 scaffold_77 . exon 204513 204653 . + . ID=Physo139702.8;Parent=Physo139702;constitutive=1;rank=8 scaffold_77 . CDS 204743 205177 . + 0 ID=Physo139702;Parent=Physo139702;rank=9 scaffold_77 . exon 204743 205177 . + . ID=Physo139702.9;Parent=Physo139702;constitutive=1;rank=9 scaffold_77 . CDS 205329 205547 . + 0 ID=Physo139702;Parent=Physo139702;rank=10 scaffold_77 . exon 205329 205547 . + . ID=Physo139702.10;Parent=Physo139702;constitutive=1;rank=10 scaffold_77 . CDS 205600 206033 . + 0 ID=Physo139702;Parent=Physo139702;rank=11 scaffold_77 . exon 205600 206033 . + . ID=Physo139702.11;Parent=Physo139702;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_77 . CDS 206081 206455 . + 0 ID=Physo139702;Parent=Physo139702;rank=12 scaffold_77 . exon 206081 206455 . + . ID=Physo139702.12;Parent=Physo139702;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_77 . CDS 206502 206672 . + 0 ID=Physo139702;Parent=Physo139702;rank=13 scaffold_77 . exon 206502 206672 . + . ID=Physo139702.13;Parent=Physo139702;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_77 . CDS 206701 208246 . + 0 ID=Physo139702;Parent=Physo139702;rank=14 scaffold_77 . exon 206701 208246 . + . ID=Physo139702.14;Parent=Physo139702;constitutive=1;ensembl_phase=2;rank=14 scaffold_77 . CDS 208272 208640 . + 0 ID=Physo139702;Parent=Physo139702;rank=15 scaffold_77 . exon 208272 208640 . + . ID=Physo139702.15;Parent=Physo139702;constitutive=1;rank=15 scaffold_77 . CDS 208667 208798 . + 0 ID=Physo139702;Parent=Physo139702;rank=16 scaffold_77 . exon 208667 208798 . + . ID=Physo139702.16;Parent=Physo139702;constitutive=1;rank=16 scaffold_77 . repeat_region 210551 210558 . ? . description=dust scaffold_77 . repeat_region 210595 210652 . ? . description=dust scaffold_77 . repeat_region 210789 210888 . ? . description=dust scaffold_77 ensembl protein_coding_gene 210767 214414 . + . ID=Physo139703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770042;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 210767 214414 . + . ID=Physo139703;Parent=Physo139703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 210767 210770 . + 0 ID=Physo139703;Parent=Physo139703;rank=1 scaffold_77 . exon 210767 210770 . + . ID=Physo139703.1;Parent=Physo139703;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . CDS 211089 211528 . + 0 ID=Physo139703;Parent=Physo139703;rank=2 scaffold_77 . exon 211089 211528 . + . ID=Physo139703.2;Parent=Physo139703;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 211617 212052 . + 0 ID=Physo139703;Parent=Physo139703;rank=3 scaffold_77 . exon 211617 212052 . + . ID=Physo139703.3;Parent=Physo139703;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_77 . CDS 212150 213467 . + 0 ID=Physo139703;Parent=Physo139703;rank=4 scaffold_77 . exon 212150 213467 . + . ID=Physo139703.4;Parent=Physo139703;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_77 . CDS 213493 213640 . + 0 ID=Physo139703;Parent=Physo139703;rank=5 scaffold_77 . exon 213493 213640 . + . ID=Physo139703.5;Parent=Physo139703;constitutive=1;ensembl_phase=2;rank=5 scaffold_77 . CDS 213699 214268 . + 0 ID=Physo139703;Parent=Physo139703;rank=6 scaffold_77 . exon 213699 214268 . + . ID=Physo139703.6;Parent=Physo139703;constitutive=1;rank=6 scaffold_77 . CDS 214409 214414 . + 0 ID=Physo139703;Parent=Physo139703;rank=7 scaffold_77 . exon 214409 214414 . + . ID=Physo139703.7;Parent=Physo139703;constitutive=1;rank=7 scaffold_77 ensembl protein_coding_gene 215374 218199 . - . ID=Physo139704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770043;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 215374 218199 . - . ID=Physo139704;Parent=Physo139704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 215374 215384 . - 0 ID=Physo139704;Parent=Physo139704;rank=4 scaffold_77 . exon 215374 215384 . - . ID=Physo139704.4;Parent=Physo139704;constitutive=1;ensembl_phase=1;rank=4 scaffold_77 . CDS 215480 215624 . - 0 ID=Physo139704;Parent=Physo139704;rank=3 scaffold_77 . exon 215480 215624 . - . ID=Physo139704.3;Parent=Physo139704;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_77 . CDS 215651 217483 . - 0 ID=Physo139704;Parent=Physo139704;rank=2 scaffold_77 . exon 215651 217483 . - . ID=Physo139704.2;Parent=Physo139704;constitutive=1;rank=2 scaffold_77 . CDS 217525 218199 . - 0 ID=Physo139704;Parent=Physo139704;rank=1 scaffold_77 . exon 217525 218199 . - . ID=Physo139704.1;Parent=Physo139704;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 218311 218823 . - . ID=Physo139705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770044;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 218311 218823 . - . ID=Physo139705;Parent=Physo139705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 218311 218823 . - 0 ID=Physo139705;Parent=Physo139705;rank=1 scaffold_77 . exon 218311 218823 . - . ID=Physo139705.1;Parent=Physo139705;constitutive=1;rank=1 scaffold_77 . biological_region 219201 219204 0.999 - . logic_name=eponine scaffold_77 . biological_region 219812 219820 0.999 + . logic_name=eponine scaffold_77 . biological_region 220334 220336 0.999 + . logic_name=eponine scaffold_77 . biological_region 220346 220349 0.999 + . logic_name=eponine scaffold_77 . biological_region 220393 220397 0.999 + . logic_name=eponine scaffold_77 . biological_region 220438 220446 0.999 - . logic_name=eponine scaffold_77 . biological_region 220486 220490 0.999 - . logic_name=eponine scaffold_77 . biological_region 220517 220524 0.999 - . logic_name=eponine scaffold_77 . biological_region 220953 220958 0.999 + . logic_name=eponine scaffold_77 . biological_region 221362 221364 0.999 + . logic_name=eponine scaffold_77 . biological_region 221513 221517 0.999 + . logic_name=eponine scaffold_77 . biological_region 221573 221577 0.999 + . logic_name=eponine scaffold_77 . biological_region 222244 222245 0.999 - . logic_name=eponine scaffold_77 . repeat_region 223019 223092 . ? . description=trf scaffold_77 . biological_region 223097 223099 0.999 - . logic_name=eponine scaffold_77 . biological_region 223120 223123 0.999 + . logic_name=eponine scaffold_77 . repeat_region 223203 223244 . ? . description=trf scaffold_77 . biological_region 223242 223245 0.999 + . logic_name=eponine scaffold_77 . biological_region 223246 223252 0.999 - . logic_name=eponine scaffold_77 . biological_region 223274 223275 0.999 - . logic_name=eponine scaffold_77 . biological_region 223289 223292 0.999 - . logic_name=eponine scaffold_77 . biological_region 225508 225510 0.999 - . logic_name=eponine scaffold_77 . biological_region 225514 225516 0.999 - . logic_name=eponine scaffold_77 . biological_region 227932 227935 0.999 - . logic_name=eponine scaffold_77 ensembl protein_coding_gene 220046 222354 . - . ID=Physo139706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770045;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 220046 222354 . - . ID=Physo139706;Parent=Physo139706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 220046 221873 . - 0 ID=Physo139706;Parent=Physo139706;rank=2 scaffold_77 . exon 220046 221873 . - . ID=Physo139706.2;Parent=Physo139706;constitutive=1;ensembl_phase=2;rank=2 scaffold_77 . CDS 221912 222354 . - 0 ID=Physo139706;Parent=Physo139706;rank=1 scaffold_77 . exon 221912 222354 . - . ID=Physo139706.1;Parent=Physo139706;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 . repeat_region 230083 230092 . ? . description=dust scaffold_77 . repeat_region 230395 230403 . ? . description=dust scaffold_77 . repeat_region 230906 230955 . ? . description=dust scaffold_77 . repeat_region 234562 234569 . ? . description=dust scaffold_77 . repeat_region 236710 236720 . ? . description=dust scaffold_77 ensembl protein_coding_gene 233305 234432 . - . ID=Physo139707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770046;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 233305 234432 . - . ID=Physo139707;Parent=Physo139707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 233305 234432 . - 0 ID=Physo139707;Parent=Physo139707;rank=1 scaffold_77 . exon 233305 234432 . - . ID=Physo139707.1;Parent=Physo139707;constitutive=1;rank=1 scaffold_77 . biological_region 245965 245965 0.999 + . logic_name=eponine scaffold_77 . biological_region 247141 247146 0.999 + . logic_name=eponine scaffold_77 . biological_region 247183 247188 0.999 + . logic_name=eponine scaffold_77 ensembl protein_coding_gene 241624 242911 . + . ID=Physo139708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770047;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 241624 242911 . + . ID=Physo139708;Parent=Physo139708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 241624 242034 . + 0 ID=Physo139708;Parent=Physo139708;rank=1 scaffold_77 . exon 241624 242034 . + . ID=Physo139708.1;Parent=Physo139708;constitutive=1;rank=1 scaffold_77 . CDS 242107 242439 . + 0 ID=Physo139708;Parent=Physo139708;rank=2 scaffold_77 . exon 242107 242439 . + . ID=Physo139708.2;Parent=Physo139708;constitutive=1;rank=2 scaffold_77 . CDS 242513 242911 . + 0 ID=Physo139708;Parent=Physo139708;rank=3 scaffold_77 . exon 242513 242911 . + . ID=Physo139708.3;Parent=Physo139708;constitutive=1;rank=3 scaffold_77 ensembl protein_coding_gene 245866 246258 . + . ID=Physo139709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770048;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 245866 246258 . + . ID=Physo139709;Parent=Physo139709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 245866 246258 . + 0 ID=Physo139709;Parent=Physo139709;rank=1 scaffold_77 . exon 245866 246258 . + . ID=Physo139709.1;Parent=Physo139709;constitutive=1;rank=1 scaffold_77 . repeat_region 249055 249145 . ? . description=trf scaffold_77 . repeat_region 255098 255111 . ? . description=dust scaffold_77 ensembl protein_coding_gene 254366 255570 . - . ID=Physo139710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770049;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 254366 255570 . - . ID=Physo139710;Parent=Physo139710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 254366 254374 . - 0 ID=Physo139710;Parent=Physo139710;rank=4 scaffold_77 . exon 254366 254374 . - . ID=Physo139710.4;Parent=Physo139710;constitutive=1;rank=4 scaffold_77 . CDS 254673 254844 . - 0 ID=Physo139710;Parent=Physo139710;rank=3 scaffold_77 . exon 254673 254844 . - . ID=Physo139710.3;Parent=Physo139710;constitutive=1;ensembl_phase=2;rank=3 scaffold_77 . CDS 254906 255093 . - 0 ID=Physo139710;Parent=Physo139710;rank=2 scaffold_77 . exon 254906 255093 . - . ID=Physo139710.2;Parent=Physo139710;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_77 . CDS 255391 255570 . - 0 ID=Physo139710;Parent=Physo139710;rank=1 scaffold_77 . exon 255391 255570 . - . ID=Physo139710.1;Parent=Physo139710;constitutive=1;rank=1 scaffold_77 . biological_region 260194 260197 0.999 - . logic_name=eponine scaffold_77 . biological_region 267117 267124 0.999 + . logic_name=eponine scaffold_77 . biological_region 267142 267144 0.999 - . logic_name=eponine scaffold_77 . biological_region 267165 267168 0.999 - . logic_name=eponine scaffold_77 ensembl protein_coding_gene 262825 264244 . + . ID=Physo139711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770050;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 262825 264244 . + . ID=Physo139711;Parent=Physo139711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 262825 263493 . + 0 ID=Physo139711;Parent=Physo139711;rank=1 scaffold_77 . exon 262825 263493 . + . ID=Physo139711.1;Parent=Physo139711;constitutive=1;rank=1 scaffold_77 . CDS 263630 264244 . + 0 ID=Physo139711;Parent=Physo139711;rank=2 scaffold_77 . exon 263630 264244 . + . ID=Physo139711.2;Parent=Physo139711;constitutive=1;rank=2 scaffold_77 ensembl protein_coding_gene 264658 270124 . + . ID=Physo158029;biotype=protein_coding;external_name=C_scaffold_77000006;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 264658 270124 . + . ID=Physo158029;Parent=Physo158029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 264658 264844 . + 0 ID=Physo158029;Parent=Physo158029;rank=1 scaffold_77 . exon 264658 264844 . + . ID=Physo158029.1;Parent=Physo158029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . CDS 265115 265222 . + 0 ID=Physo158029;Parent=Physo158029;rank=2 scaffold_77 . exon 265115 265222 . + . ID=Physo158029.2;Parent=Physo158029;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_77 . CDS 265340 265560 . + 0 ID=Physo158029;Parent=Physo158029;rank=3 scaffold_77 . exon 265340 265560 . + . ID=Physo158029.3;Parent=Physo158029;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 . CDS 265907 266058 . + 0 ID=Physo158029;Parent=Physo158029;rank=4 scaffold_77 . exon 265907 266058 . + . ID=Physo158029.4;Parent=Physo158029;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_77 . CDS 266391 267238 . + 0 ID=Physo158029;Parent=Physo158029;rank=5 scaffold_77 . exon 266391 267238 . + . ID=Physo158029.5;Parent=Physo158029;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_77 . CDS 267524 267587 . + 0 ID=Physo158029;Parent=Physo158029;rank=6 scaffold_77 . exon 267524 267587 . + . ID=Physo158029.6;Parent=Physo158029;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_77 . CDS 267815 268077 . + 0 ID=Physo158029;Parent=Physo158029;rank=7 scaffold_77 . exon 267815 268077 . + . ID=Physo158029.7;Parent=Physo158029;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_77 . CDS 268105 268619 . + 0 ID=Physo158029;Parent=Physo158029;rank=8 scaffold_77 . exon 268105 268619 . + . ID=Physo158029.8;Parent=Physo158029;constitutive=1;ensembl_phase=1;rank=8 scaffold_77 . CDS 268647 269151 . + 0 ID=Physo158029;Parent=Physo158029;rank=9 scaffold_77 . exon 268647 269151 . + . ID=Physo158029.9;Parent=Physo158029;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_77 . CDS 269493 270124 . + 0 ID=Physo158029;Parent=Physo158029;rank=10 scaffold_77 . repeat_region 273965 273996 . ? . description=trf scaffold_77 ensembl protein_coding_gene 271754 272314 . + . ID=Physo109230;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_770003;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 271754 272314 . + . ID=Physo109230;Parent=Physo109230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 271754 272259 . + 0 ID=Physo109230;Parent=Physo109230;rank=1 scaffold_77 . exon 271754 272259 . + . ID=Physo109230.1;Parent=Physo109230;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 . CDS 272296 272314 . + 0 ID=Physo109230;Parent=Physo109230;rank=2 scaffold_77 . exon 272296 272314 . + . ID=Physo109230.2;Parent=Physo109230;constitutive=1;ensembl_phase=2;rank=2 scaffold_77 ensembl pseudogene 276422 277477 . + . ID=Physo109231;biotype=pseudogene;external_name=estExt_fgenesh1_pm.C_770004;logic_name=jgi_physo1_1 scaffold_77 ensembl pseudogene 276422 277477 . + . ID=Physo109231;Parent=Physo109231;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_77 . exon 276422 277477 . + . ID=Physo109231.1;Parent=Physo109231;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_77 ensembl protein_coding_gene 272573 274486 . - . ID=Physo139714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770053;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 272573 274486 . - . ID=Physo139714;Parent=Physo139714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 272573 272743 . - 0 ID=Physo139714;Parent=Physo139714;rank=3 scaffold_77 . exon 272573 272743 . - . ID=Physo139714.3;Parent=Physo139714;constitutive=1;rank=3 scaffold_77 . CDS 272811 273350 . - 0 ID=Physo139714;Parent=Physo139714;rank=2 scaffold_77 . exon 272811 273350 . - . ID=Physo139714.2;Parent=Physo139714;constitutive=1;rank=2 scaffold_77 . CDS 273472 274464 . - 0 ID=Physo139714;Parent=Physo139714;rank=1 scaffold_77 . exon 273472 274486 . - . ID=Physo139714.1;Parent=Physo139714;constitutive=1;ensembl_phase=-1;rank=1 scaffold_77 . exon 269493 270124 . + . ID=Physo158029.10;Parent=Physo158029;constitutive=1;ensembl_phase=1;rank=10 scaffold_77 . repeat_region 281105 281141 . ? . description=dust scaffold_77 . repeat_region 283697 283709 . ? . description=dust scaffold_77 ensembl protein_coding_gene 288754 292103 . - . ID=Physo139717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770056;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 288754 292103 . - . ID=Physo139717;Parent=Physo139717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 288754 288893 . - 0 ID=Physo139717;Parent=Physo139717;rank=8 scaffold_77 . exon 288754 288893 . - . ID=Physo139717.8;Parent=Physo139717;constitutive=1;ensembl_phase=1;rank=8 scaffold_77 . CDS 288987 289179 . - 0 ID=Physo139717;Parent=Physo139717;rank=7 scaffold_77 . CDS 289250 289270 . - 0 ID=Physo139717;Parent=Physo139717;rank=6 scaffold_77 . CDS 289305 289550 . - 0 ID=Physo139717;Parent=Physo139717;rank=5 scaffold_77 . CDS 289629 290261 . - 0 ID=Physo139717;Parent=Physo139717;rank=4 scaffold_77 . CDS 290624 290986 . - 0 ID=Physo139717;Parent=Physo139717;rank=3 scaffold_77 . CDS 291056 291373 . - 0 ID=Physo139717;Parent=Physo139717;rank=2 scaffold_77 . CDS 291453 292091 . - 0 ID=Physo139717;Parent=Physo139717;rank=1 scaffold_77 ensembl protein_coding_gene 285655 287226 . + . ID=Physo158031;biotype=protein_coding;external_name=C_scaffold_77000008;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 285655 287226 . + . ID=Physo158031;Parent=Physo158031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 285655 286332 . + 0 ID=Physo158031;Parent=Physo158031;rank=1 scaffold_77 . exon 285655 286332 . + . ID=Physo158031.1;Parent=Physo158031;constitutive=1;rank=1 scaffold_77 . CDS 286402 286713 . + 0 ID=Physo158031;Parent=Physo158031;rank=2 scaffold_77 . exon 286402 286713 . + . ID=Physo158031.2;Parent=Physo158031;constitutive=1;rank=2 scaffold_77 . CDS 286789 287028 . + 0 ID=Physo158031;Parent=Physo158031;rank=3 scaffold_77 . exon 286789 287028 . + . ID=Physo158031.3;Parent=Physo158031;constitutive=1;rank=3 scaffold_77 . CDS 287062 287226 . + 0 ID=Physo158031;Parent=Physo158031;rank=4 scaffold_77 . exon 287062 287226 . + . ID=Physo158031.4;Parent=Physo158031;constitutive=1;rank=4 scaffold_77 . biological_region 291294 291298 0.999 - . logic_name=eponine scaffold_77 . biological_region 292063 292070 0.999 - . logic_name=eponine scaffold_77 . biological_region 296772 296776 0.999 - . logic_name=eponine scaffold_77 . repeat_region 296793 296910 . ? . description=trf scaffold_77 . biological_region 296831 296835 0.999 - . logic_name=eponine scaffold_77 . exon 288987 289179 . - . ID=Physo139717.7;Parent=Physo139717;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_77 . exon 289250 289270 . - . ID=Physo139717.6;Parent=Physo139717;constitutive=1;rank=6 scaffold_77 . exon 289305 289550 . - . ID=Physo139717.5;Parent=Physo139717;constitutive=1;rank=5 scaffold_77 . exon 289629 290261 . - . ID=Physo139717.4;Parent=Physo139717;constitutive=1;rank=4 scaffold_77 . exon 290624 290986 . - . ID=Physo139717.3;Parent=Physo139717;constitutive=1;rank=3 scaffold_77 . exon 291056 291373 . - . ID=Physo139717.2;Parent=Physo139717;constitutive=1;rank=2 scaffold_77 . exon 291453 292103 . - . ID=Physo139717.1;Parent=Physo139717;constitutive=1;ensembl_phase=-1;rank=1 scaffold_77 ensembl protein_coding_gene 293373 294507 . + . ID=Physo158035;biotype=protein_coding;external_name=C_scaffold_77000012;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 293373 294507 . + . ID=Physo158035;Parent=Physo158035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . exon 293373 293623 . + . ID=Physo158035.1;Parent=Physo158035;constitutive=1;ensembl_phase=-1;rank=1 scaffold_77 . CDS 293375 293623 . + 0 ID=Physo158035;Parent=Physo158035;rank=1 scaffold_77 . CDS 293690 293831 . + 0 ID=Physo158035;Parent=Physo158035;rank=2 scaffold_77 . exon 293690 293831 . + . ID=Physo158035.2;Parent=Physo158035;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_77 . CDS 294008 294507 . + 0 ID=Physo158035;Parent=Physo158035;rank=3 scaffold_77 . exon 294008 294507 . + . ID=Physo158035.3;Parent=Physo158035;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 ensembl protein_coding_gene 295174 296008 . + . ID=Physo158036;biotype=protein_coding;external_name=C_scaffold_77000013;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 295174 296008 . + . ID=Physo158036;Parent=Physo158036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 295174 295641 . + 0 ID=Physo158036;Parent=Physo158036;rank=1 scaffold_77 . exon 295174 295641 . + . ID=Physo158036.1;Parent=Physo158036;constitutive=1;rank=1 scaffold_77 . CDS 295677 295895 . + 0 ID=Physo158036;Parent=Physo158036;rank=2 scaffold_77 . exon 295677 295895 . + . ID=Physo158036.2;Parent=Physo158036;constitutive=1;rank=2 scaffold_77 . CDS 295970 296008 . + 0 ID=Physo158036;Parent=Physo158036;rank=3 scaffold_77 . exon 295970 296008 . + . ID=Physo158036.3;Parent=Physo158036;constitutive=1;rank=3 scaffold_77 . repeat_region 299820 299827 . ? . description=dust scaffold_77 . repeat_region 304330 304337 . ? . description=dust scaffold_77 ensembl protein_coding_gene 305934 307664 . + . ID=Physo139720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770059;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 305934 307664 . + . ID=Physo139720;Parent=Physo139720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 305934 305975 . + 0 ID=Physo139720;Parent=Physo139720;rank=1 scaffold_77 . exon 305934 305975 . + . ID=Physo139720.1;Parent=Physo139720;constitutive=1;rank=1 scaffold_77 . CDS 306036 306226 . + 0 ID=Physo139720;Parent=Physo139720;rank=2 scaffold_77 . exon 306036 306226 . + . ID=Physo139720.2;Parent=Physo139720;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_77 . CDS 306298 306502 . + 0 ID=Physo139720;Parent=Physo139720;rank=3 scaffold_77 . exon 306298 306502 . + . ID=Physo139720.3;Parent=Physo139720;constitutive=1;ensembl_phase=2;rank=3 scaffold_77 . CDS 306576 306747 . + 0 ID=Physo139720;Parent=Physo139720;rank=4 scaffold_77 . exon 306576 306747 . + . ID=Physo139720.4;Parent=Physo139720;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_77 . CDS 306808 307009 . + 0 ID=Physo139720;Parent=Physo139720;rank=5 scaffold_77 . exon 306808 307009 . + . ID=Physo139720.5;Parent=Physo139720;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_77 . CDS 307090 307233 . + 0 ID=Physo139720;Parent=Physo139720;rank=6 scaffold_77 . exon 307090 307233 . + . ID=Physo139720.6;Parent=Physo139720;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_77 . CDS 307299 307514 . + 0 ID=Physo139720;Parent=Physo139720;rank=7 scaffold_77 . exon 307299 307514 . + . ID=Physo139720.7;Parent=Physo139720;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_77 . CDS 307577 307583 . + 0 ID=Physo139720;Parent=Physo139720;rank=8 scaffold_77 . exon 307577 307583 . + . ID=Physo139720.8;Parent=Physo139720;constitutive=1;ensembl_phase=2;rank=8 scaffold_77 . CDS 307614 307620 . + 0 ID=Physo139720;Parent=Physo139720;rank=9 scaffold_77 . exon 307614 307620 . + . ID=Physo139720.9;Parent=Physo139720;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_77 . CDS 307654 307664 . + 0 ID=Physo139720;Parent=Physo139720;rank=10 scaffold_77 . exon 307654 307664 . + . ID=Physo139720.10;Parent=Physo139720;constitutive=1;ensembl_phase=1;rank=10 scaffold_77 ensembl protein_coding_gene 307770 312458 . - . ID=Physo139721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770060;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 307770 312458 . - . ID=Physo139721;Parent=Physo139721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 307770 308543 . - 0 ID=Physo139721;Parent=Physo139721;rank=11 scaffold_77 . exon 307770 308543 . - . ID=Physo139721.11;Parent=Physo139721;constitutive=1;rank=11 scaffold_77 . CDS 308648 309275 . - 0 ID=Physo139721;Parent=Physo139721;rank=10 scaffold_77 . exon 308648 309275 . - . ID=Physo139721.10;Parent=Physo139721;constitutive=1;ensembl_phase=2;rank=10 scaffold_77 . CDS 309483 309546 . - 0 ID=Physo139721;Parent=Physo139721;rank=9 scaffold_77 . CDS 309698 309900 . - 0 ID=Physo139721;Parent=Physo139721;rank=8 scaffold_77 . CDS 309975 310506 . - 0 ID=Physo139721;Parent=Physo139721;rank=7 scaffold_77 . CDS 310609 310655 . - 0 ID=Physo139721;Parent=Physo139721;rank=6 scaffold_77 . CDS 310828 310853 . - 0 ID=Physo139721;Parent=Physo139721;rank=5 scaffold_77 . CDS 310938 311089 . - 0 ID=Physo139721;Parent=Physo139721;rank=4 scaffold_77 . CDS 311123 311317 . - 0 ID=Physo139721;Parent=Physo139721;rank=3 scaffold_77 . CDS 311691 311749 . - 0 ID=Physo139721;Parent=Physo139721;rank=2 scaffold_77 . CDS 311923 312458 . - 0 ID=Physo139721;Parent=Physo139721;rank=1 scaffold_77 . exon 309483 309546 . - . ID=Physo139721.9;Parent=Physo139721;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_77 . exon 309698 309900 . - . ID=Physo139721.8;Parent=Physo139721;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_77 . exon 309975 310506 . - . ID=Physo139721.7;Parent=Physo139721;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_77 . exon 310609 310655 . - . ID=Physo139721.6;Parent=Physo139721;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_77 . exon 310828 310853 . - . ID=Physo139721.5;Parent=Physo139721;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_77 . exon 310938 311089 . - . ID=Physo139721.4;Parent=Physo139721;constitutive=1;ensembl_phase=1;rank=4 scaffold_77 . exon 311123 311317 . - . ID=Physo139721.3;Parent=Physo139721;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_77 . exon 311691 311749 . - . ID=Physo139721.2;Parent=Physo139721;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_77 . exon 311923 312458 . - . ID=Physo139721.1;Parent=Physo139721;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 ensembl protein_coding_gene 318557 319594 . + . ID=Physo139722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770061;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 318557 319594 . + . ID=Physo139722;Parent=Physo139722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 318557 319006 . + 0 ID=Physo139722;Parent=Physo139722;rank=1 scaffold_77 . exon 318557 319006 . + . ID=Physo139722.1;Parent=Physo139722;constitutive=1;rank=1 scaffold_77 . CDS 319081 319371 . + 0 ID=Physo139722;Parent=Physo139722;rank=2 scaffold_77 . CDS 319571 319594 . + 0 ID=Physo139722;Parent=Physo139722;rank=3 scaffold_77 . biological_region 323320 323323 0.999 + . logic_name=eponine scaffold_77 . biological_region 324094 324098 0.999 + . logic_name=eponine scaffold_77 . repeat_region 325361 325369 . ? . description=dust scaffold_77 . biological_region 327149 327161 0.999 + . logic_name=eponine scaffold_77 . biological_region 327168 327172 0.999 - . logic_name=eponine scaffold_77 . biological_region 327221 327226 0.999 + . logic_name=eponine scaffold_77 . biological_region 327393 327398 0.999 + . logic_name=eponine scaffold_77 . biological_region 327425 327430 0.999 - . logic_name=eponine scaffold_77 . repeat_region 327734 327780 . ? . description=trf scaffold_77 . repeat_region 328071 328078 . ? . description=dust scaffold_77 . biological_region 328097 328107 0.999 + . logic_name=eponine scaffold_77 . biological_region 328168 328170 0.999 - . logic_name=eponine scaffold_77 . biological_region 328255 328259 0.999 + . logic_name=eponine scaffold_77 . exon 319081 319371 . + . ID=Physo139722.2;Parent=Physo139722;constitutive=1;rank=2 scaffold_77 . exon 319571 319594 . + . ID=Physo139722.3;Parent=Physo139722;constitutive=1;rank=3 scaffold_77 ensembl protein_coding_gene 323044 324558 . - . ID=Physo139723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770062;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 323044 324558 . - . ID=Physo139723;Parent=Physo139723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 323044 323484 . - 0 ID=Physo139723;Parent=Physo139723;rank=3 scaffold_77 . exon 323044 323484 . - . ID=Physo139723.3;Parent=Physo139723;constitutive=1;rank=3 scaffold_77 . CDS 323567 323917 . - 0 ID=Physo139723;Parent=Physo139723;rank=2 scaffold_77 . exon 323567 323917 . - . ID=Physo139723.2;Parent=Physo139723;constitutive=1;rank=2 scaffold_77 . CDS 323956 324558 . - 0 ID=Physo139723;Parent=Physo139723;rank=1 scaffold_77 . exon 323956 324558 . - . ID=Physo139723.1;Parent=Physo139723;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 325744 327545 . - . ID=Physo139724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770063;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 325744 327545 . - . ID=Physo139724;Parent=Physo139724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 325744 326184 . - 0 ID=Physo139724;Parent=Physo139724;rank=3 scaffold_77 . exon 325744 326184 . - . ID=Physo139724.3;Parent=Physo139724;constitutive=1;rank=3 scaffold_77 . CDS 326273 326596 . - 0 ID=Physo139724;Parent=Physo139724;rank=2 scaffold_77 . exon 326273 326596 . - . ID=Physo139724.2;Parent=Physo139724;constitutive=1;rank=2 scaffold_77 . CDS 326685 327545 . - 0 ID=Physo139724;Parent=Physo139724;rank=1 scaffold_77 . exon 326685 327545 . - . ID=Physo139724.1;Parent=Physo139724;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 330343 332256 . - . ID=Physo139725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770064;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 330343 332256 . - . ID=Physo139725;Parent=Physo139725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 330343 332256 . - 0 ID=Physo139725;Parent=Physo139725;rank=1 scaffold_77 . exon 330343 332256 . - . ID=Physo139725.1;Parent=Physo139725;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 334553 338863 . - . ID=Physo139726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770065;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 334553 338863 . - . ID=Physo139726;Parent=Physo139726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . exon 334553 335307 . - . ID=Physo139726.5;Parent=Physo139726;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_77 . CDS 334734 335307 . - 0 ID=Physo139726;Parent=Physo139726;rank=5 scaffold_77 . CDS 335337 337669 . - 0 ID=Physo139726;Parent=Physo139726;rank=4 scaffold_77 . exon 335337 337669 . - . ID=Physo139726.4;Parent=Physo139726;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_77 . CDS 337690 338341 . - 0 ID=Physo139726;Parent=Physo139726;rank=3 scaffold_77 . exon 337690 338341 . - . ID=Physo139726.3;Parent=Physo139726;constitutive=1;ensembl_phase=2;rank=3 scaffold_77 . CDS 338398 338523 . - 0 ID=Physo139726;Parent=Physo139726;rank=2 scaffold_77 . exon 338398 338523 . - . ID=Physo139726.2;Parent=Physo139726;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_77 . CDS 338761 338768 . - 0 ID=Physo139726;Parent=Physo139726;rank=1 scaffold_77 . biological_region 338889 338892 0.999 + . logic_name=eponine scaffold_77 . biological_region 338964 338972 0.999 - . logic_name=eponine scaffold_77 . repeat_region 338991 338998 . ? . description=dust scaffold_77 . biological_region 340938 340941 0.999 - . logic_name=eponine scaffold_77 . biological_region 340994 340996 0.999 - . logic_name=eponine scaffold_77 . biological_region 341059 341064 0.999 - . logic_name=eponine scaffold_77 . biological_region 341116 341120 0.999 - . logic_name=eponine scaffold_77 . biological_region 341146 341152 0.999 - . logic_name=eponine scaffold_77 . biological_region 341345 341349 0.999 - . logic_name=eponine scaffold_77 . repeat_region 341509 341518 . ? . description=dust scaffold_77 . repeat_region 341523 341565 . ? . description=trf scaffold_77 . repeat_region 344395 344439 . ? . description=trf scaffold_77 . repeat_region 344405 344445 . ? . description=trf scaffold_77 . repeat_region 344546 344572 . ? . description=trf scaffold_77 . repeat_region 344995 345002 . ? . description=dust scaffold_77 . exon 338761 338863 . - . ID=Physo139726.1;Parent=Physo139726;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_77 ensembl protein_coding_gene 340120 341377 . - . ID=Physo139727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770066;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 340120 341377 . - . ID=Physo139727;Parent=Physo139727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . exon 340120 340688 . - . ID=Physo139727.3;Parent=Physo139727;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_77 . CDS 340314 340688 . - 0 ID=Physo139727;Parent=Physo139727;rank=3 scaffold_77 . CDS 340786 341035 . - 0 ID=Physo139727;Parent=Physo139727;rank=2 scaffold_77 . exon 340786 341035 . - . ID=Physo139727.2;Parent=Physo139727;constitutive=1;ensembl_phase=2;rank=2 scaffold_77 . CDS 341094 341230 . - 0 ID=Physo139727;Parent=Physo139727;rank=1 scaffold_77 . exon 341094 341377 . - . ID=Physo139727.1;Parent=Physo139727;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_77 ensembl protein_coding_gene 342043 343777 . + . ID=Physo139728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770067;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 342043 343777 . + . ID=Physo139728;Parent=Physo139728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 342043 342498 . + 0 ID=Physo139728;Parent=Physo139728;rank=1 scaffold_77 . exon 342043 342498 . + . ID=Physo139728.1;Parent=Physo139728;constitutive=1;rank=1 scaffold_77 . CDS 342581 343235 . + 0 ID=Physo139728;Parent=Physo139728;rank=2 scaffold_77 . exon 342581 343235 . + . ID=Physo139728.2;Parent=Physo139728;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_77 . CDS 343485 343777 . + 0 ID=Physo139728;Parent=Physo139728;rank=3 scaffold_77 . exon 343485 343777 . + . ID=Physo139728.3;Parent=Physo139728;constitutive=1;ensembl_phase=1;rank=3 scaffold_77 ensembl protein_coding_gene 346207 347141 . - . ID=Physo139729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770068;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 346207 347141 . - . ID=Physo139729;Parent=Physo139729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 346207 346217 . - 0 ID=Physo139729;Parent=Physo139729;rank=4 scaffold_77 . exon 346207 346217 . - . ID=Physo139729.4;Parent=Physo139729;constitutive=1;ensembl_phase=1;rank=4 scaffold_77 . CDS 346292 346367 . - 0 ID=Physo139729;Parent=Physo139729;rank=3 scaffold_77 . exon 346292 346367 . - . ID=Physo139729.3;Parent=Physo139729;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_77 . CDS 346433 346666 . - 0 ID=Physo139729;Parent=Physo139729;rank=2 scaffold_77 . exon 346433 346666 . - . ID=Physo139729.2;Parent=Physo139729;constitutive=1;rank=2 scaffold_77 . CDS 346707 347129 . - 0 ID=Physo139729;Parent=Physo139729;rank=1 scaffold_77 . exon 346707 347141 . - . ID=Physo139729.1;Parent=Physo139729;constitutive=1;ensembl_phase=-1;rank=1 scaffold_77 ensembl protein_coding_gene 347406 348725 . + . ID=Physo139730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770069;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 347406 348725 . + . ID=Physo139730;Parent=Physo139730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 347406 348725 . + 0 ID=Physo139730;Parent=Physo139730;rank=1 scaffold_77 . exon 347406 348725 . + . ID=Physo139730.1;Parent=Physo139730;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 351038 351595 . + . ID=Physo139731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770070;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 351038 351595 . + . ID=Physo139731;Parent=Physo139731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 351038 351595 . + 0 ID=Physo139731;Parent=Physo139731;rank=1 scaffold_77 . exon 351038 351595 . + . ID=Physo139731.1;Parent=Physo139731;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 351782 352276 . - . ID=Physo139732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770071;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 351782 352276 . - . ID=Physo139732;Parent=Physo139732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 351782 352276 . - 0 ID=Physo139732;Parent=Physo139732;rank=1 scaffold_77 . exon 351782 352276 . - . ID=Physo139732.1;Parent=Physo139732;constitutive=1;rank=1 scaffold_77 . biological_region 362375 362376 0.999 - . logic_name=eponine scaffold_77 . biological_region 368116 368117 0.999 - . logic_name=eponine scaffold_77 . biological_region 368282 368283 0.999 + . logic_name=eponine scaffold_77 . biological_region 368311 368316 0.999 - . logic_name=eponine scaffold_77 ensembl protein_coding_gene 361198 362550 . + . ID=Physo139733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770072;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 361198 362550 . + . ID=Physo139733;Parent=Physo139733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 361198 362550 . + 0 ID=Physo139733;Parent=Physo139733;rank=1 scaffold_77 . exon 361198 362550 . + . ID=Physo139733.1;Parent=Physo139733;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 365152 366693 . - . ID=Physo139734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770073;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 365152 366693 . - . ID=Physo139734;Parent=Physo139734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 365152 366693 . - 0 ID=Physo139734;Parent=Physo139734;rank=1 scaffold_77 . exon 365152 366693 . - . ID=Physo139734.1;Parent=Physo139734;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 366973 368624 . - . ID=Physo139735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770074;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 366973 368624 . - . ID=Physo139735;Parent=Physo139735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 366973 367425 . - 0 ID=Physo139735;Parent=Physo139735;rank=2 scaffold_77 . exon 366973 367425 . - . ID=Physo139735.2;Parent=Physo139735;constitutive=1;rank=2 scaffold_77 . CDS 367486 368610 . - 0 ID=Physo139735;Parent=Physo139735;rank=1 scaffold_77 . exon 367486 368624 . - . ID=Physo139735.1;Parent=Physo139735;constitutive=1;ensembl_phase=-1;rank=1 scaffold_77 . repeat_region 372218 372225 . ? . description=dust scaffold_77 . repeat_region 376637 376664 . ? . description=trf scaffold_77 ensembl protein_coding_gene 368739 370429 . + . ID=Physo139736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770075;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 368739 370429 . + . ID=Physo139736;Parent=Physo139736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 368739 369584 . + 0 ID=Physo139736;Parent=Physo139736;rank=1 scaffold_77 . exon 368739 369584 . + . ID=Physo139736.1;Parent=Physo139736;constitutive=1;rank=1 scaffold_77 . CDS 369647 370429 . + 0 ID=Physo139736;Parent=Physo139736;rank=2 scaffold_77 . exon 369647 370429 . + . ID=Physo139736.2;Parent=Physo139736;constitutive=1;rank=2 scaffold_77 ensembl protein_coding_gene 370528 372478 . - . ID=Physo139737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770076;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 370528 372478 . - . ID=Physo139737;Parent=Physo139737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . exon 370528 371141 . - . ID=Physo139737.3;Parent=Physo139737;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_77 . CDS 370638 371141 . - 0 ID=Physo139737;Parent=Physo139737;rank=3 scaffold_77 . CDS 371223 371567 . - 0 ID=Physo139737;Parent=Physo139737;rank=2 scaffold_77 . exon 371223 371567 . - . ID=Physo139737.2;Parent=Physo139737;constitutive=1;rank=2 scaffold_77 . CDS 371654 372478 . - 0 ID=Physo139737;Parent=Physo139737;rank=1 scaffold_77 . exon 371654 372478 . - . ID=Physo139737.1;Parent=Physo139737;constitutive=1;rank=1 scaffold_77 ensembl protein_coding_gene 372821 376118 . + . ID=Physo139738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770077;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 372821 376118 . + . ID=Physo139738;Parent=Physo139738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 372821 372894 . + 0 ID=Physo139738;Parent=Physo139738;rank=1 scaffold_77 . exon 372821 372894 . + . ID=Physo139738.1;Parent=Physo139738;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_77 . CDS 373011 374370 . + 0 ID=Physo139738;Parent=Physo139738;rank=2 scaffold_77 . exon 373011 374370 . + . ID=Physo139738.2;Parent=Physo139738;constitutive=1;ensembl_phase=2;rank=2 scaffold_77 . CDS 374614 375516 . + 0 ID=Physo139738;Parent=Physo139738;rank=3 scaffold_77 . exon 374614 375516 . + . ID=Physo139738.3;Parent=Physo139738;constitutive=1;rank=3 scaffold_77 . CDS 375596 376039 . + 0 ID=Physo139738;Parent=Physo139738;rank=4 scaffold_77 . exon 375596 376118 . + . ID=Physo139738.4;Parent=Physo139738;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_77 ensembl protein_coding_gene 378279 380384 . + . ID=Physo139739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_770078;logic_name=jgi_physo1_1 scaffold_77 ensembl transcript 378279 380384 . + . ID=Physo139739;Parent=Physo139739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_77 . CDS 378279 378582 . + 0 ID=Physo139739;Parent=Physo139739;rank=1 scaffold_77 . exon 378279 378582 . + . ID=Physo139739.1;Parent=Physo139739;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_77 . CDS 378653 379377 . + 0 ID=Physo139739;Parent=Physo139739;rank=2 scaffold_77 . CDS 379431 380384 . + 0 ID=Physo139739;Parent=Physo139739;rank=3 scaffold_77 . biological_region 378667 378668 0.999 - . logic_name=eponine scaffold_77 . biological_region 378751 378754 0.999 + . logic_name=eponine scaffold_77 . biological_region 378772 378774 0.999 + . logic_name=eponine scaffold_77 . biological_region 379053 379056 0.999 - . logic_name=eponine scaffold_77 . repeat_region 379666 379800 . - . description=GypsyPi-1c_I-int scaffold_77 . repeat_region 380365 381855 . - . description=GypsyPi-1c_I-int scaffold_77 . biological_region 380841 380845 0.999 + . logic_name=eponine scaffold_77 . repeat_region 382303 382850 . - . description=GypsyPi-1c_I-int scaffold_77 . biological_region 382603 382604 0.999 - . logic_name=eponine scaffold_77 . repeat_region 383130 383571 . - . description=GypsyPi-1c_I-int scaffold_77 . exon 378653 379377 . + . ID=Physo139739.2;Parent=Physo139739;constitutive=1;ensembl_phase=1;rank=2 scaffold_77 . exon 379431 380384 . + . ID=Physo139739.3;Parent=Physo139739;constitutive=1;rank=3 ##gff-version 3 ##sequence-region scaffold_63 1 391609 scaffold_63 . biological_region 276 278 0.999 - . logic_name=eponine scaffold_63 . repeat_region 2275 2313 . ? . description=trf scaffold_63 . repeat_region 2758 5218 . ? . description=dust scaffold_63 . repeat_region 7178 7571 . ? . description=dust scaffold_63 . repeat_region 8671 8766 . ? . description=trf scaffold_63 . repeat_region 9379 9428 . ? . description=dust scaffold_63 ensembl protein_coding_gene 43 1057 . + . ID=Physo138382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630001;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 43 1057 . + . ID=Physo138382;Parent=Physo138382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 43 1057 . + . ID=Physo138382.1;Parent=Physo138382;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_63 . CDS 46 564 . + 0 ID=Physo138382;Parent=Physo138382;rank=1 scaffold_63 ensembl protein_coding_gene 7572 8533 . - . ID=Physo138383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630002;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 7572 8533 . - . ID=Physo138383;Parent=Physo138383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 7572 7597 . - . ID=Physo138383.4;Parent=Physo138383;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_63 . CDS 7594 7597 . - 0 ID=Physo138383;Parent=Physo138383;rank=4 scaffold_63 . CDS 7672 7927 . - 0 ID=Physo138383;Parent=Physo138383;rank=3 scaffold_63 . exon 7672 7927 . - . ID=Physo138383.3;Parent=Physo138383;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_63 . CDS 8059 8218 . - 0 ID=Physo138383;Parent=Physo138383;rank=2 scaffold_63 . exon 8059 8218 . - . ID=Physo138383.2;Parent=Physo138383;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . CDS 8273 8533 . - 0 ID=Physo138383;Parent=Physo138383;rank=1 scaffold_63 . exon 8273 8533 . - . ID=Physo138383.1;Parent=Physo138383;constitutive=1;rank=1 scaffold_63 . repeat_region 17079 21777 . ? . description=dust scaffold_63 . repeat_region 23089 23138 . ? . description=dust scaffold_63 . biological_region 23132 23134 0.999 - . logic_name=eponine scaffold_63 . repeat_region 25240 25289 . ? . description=dust scaffold_63 . repeat_region 26266 27973 . ? . description=dust scaffold_63 . repeat_region 27974 28050 . ? . description=dust scaffold_63 ensembl protein_coding_gene 22304 25231 . + . ID=Physo138384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630003;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 22304 25231 . + . ID=Physo138384;Parent=Physo138384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 22304 22564 . + 0 ID=Physo138384;Parent=Physo138384;rank=1 scaffold_63 . exon 22304 22564 . + . ID=Physo138384.1;Parent=Physo138384;constitutive=1;rank=1 scaffold_63 . CDS 22619 22778 . + 0 ID=Physo138384;Parent=Physo138384;rank=2 scaffold_63 . exon 22619 22778 . + . ID=Physo138384.2;Parent=Physo138384;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . CDS 22910 23073 . + 0 ID=Physo138384;Parent=Physo138384;rank=3 scaffold_63 . exon 22910 23073 . + . ID=Physo138384.3;Parent=Physo138384;constitutive=1;ensembl_phase=1;rank=3 scaffold_63 . CDS 23434 23478 . + 0 ID=Physo138384;Parent=Physo138384;rank=4 scaffold_63 . exon 23434 23478 . + . ID=Physo138384.4;Parent=Physo138384;constitutive=1;rank=4 scaffold_63 . CDS 23850 24176 . + 0 ID=Physo138384;Parent=Physo138384;rank=5 scaffold_63 . exon 23850 24176 . + . ID=Physo138384.5;Parent=Physo138384;constitutive=1;rank=5 scaffold_63 . CDS 24227 24296 . + 0 ID=Physo138384;Parent=Physo138384;rank=6 scaffold_63 . exon 24227 24296 . + . ID=Physo138384.6;Parent=Physo138384;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_63 . CDS 24373 24539 . + 0 ID=Physo138384;Parent=Physo138384;rank=7 scaffold_63 . exon 24373 24626 . + . ID=Physo138384.7;Parent=Physo138384;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_63 . exon 24698 25231 . + . ID=Physo138384.8;Parent=Physo138384;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=8 scaffold_63 ensembl protein_coding_gene 25394 28693 . - . ID=Physo138385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630004;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 25394 28693 . - . ID=Physo138385;Parent=Physo138385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 25394 25415 . - 0 ID=Physo138385;Parent=Physo138385;rank=5 scaffold_63 . exon 25394 25415 . - . ID=Physo138385.5;Parent=Physo138385;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 . CDS 25479 25546 . - 0 ID=Physo138385;Parent=Physo138385;rank=4 scaffold_63 . exon 25479 25546 . - . ID=Physo138385.4;Parent=Physo138385;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_63 . CDS 25623 25713 . - 0 ID=Physo138385;Parent=Physo138385;rank=3 scaffold_63 . exon 25623 25713 . - . ID=Physo138385.3;Parent=Physo138385;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 25841 26206 . - 0 ID=Physo138385;Parent=Physo138385;rank=2 scaffold_63 . exon 25841 26206 . - . ID=Physo138385.2;Parent=Physo138385;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_63 . CDS 28086 28693 . - 0 ID=Physo138385;Parent=Physo138385;rank=1 scaffold_63 . exon 28086 28693 . - . ID=Physo138385.1;Parent=Physo138385;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 ensembl protein_coding_gene 32512 33081 . + . ID=Physo138386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630005;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 32512 33081 . + . ID=Physo138386;Parent=Physo138386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 32512 33081 . + 0 ID=Physo138386;Parent=Physo138386;rank=1 scaffold_63 . exon 32512 33081 . + . ID=Physo138386.1;Parent=Physo138386;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 38492 39523 . + . ID=Physo138387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630006;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 38492 39523 . + . ID=Physo138387;Parent=Physo138387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 38492 39523 . + 0 ID=Physo138387;Parent=Physo138387;rank=1 scaffold_63 . exon 38492 39523 . + . ID=Physo138387.1;Parent=Physo138387;constitutive=1;rank=1 scaffold_63 . biological_region 40478 40481 0.999 - . logic_name=eponine scaffold_63 . repeat_region 42264 42271 . ? . description=dust scaffold_63 . biological_region 42527 42532 0.999 + . logic_name=eponine scaffold_63 . biological_region 42574 42577 0.999 - . logic_name=eponine scaffold_63 . biological_region 43083 43086 0.999 - . logic_name=eponine scaffold_63 . biological_region 43658 43663 0.999 + . logic_name=eponine scaffold_63 . biological_region 43740 43746 0.999 - . logic_name=eponine scaffold_63 . biological_region 45605 45608 0.999 - . logic_name=eponine scaffold_63 . biological_region 46584 46587 0.999 - . logic_name=eponine scaffold_63 . repeat_region 48379 48414 . ? . description=dust scaffold_63 ensembl protein_coding_gene 42731 44596 . + . ID=Physo138388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630007;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 42731 44596 . + . ID=Physo138388;Parent=Physo138388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 42731 44596 . + 0 ID=Physo138388;Parent=Physo138388;rank=1 scaffold_63 . exon 42731 44596 . + . ID=Physo138388.1;Parent=Physo138388;constitutive=1;rank=1 scaffold_63 . repeat_region 50445 50836 . ? . description=trf scaffold_63 . repeat_region 55347 55408 . ? . description=trf scaffold_63 . repeat_region 57093 57136 . ? . description=trf scaffold_63 ensembl protein_coding_gene 55839 57421 . + . ID=Physo138389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630008;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 55839 57421 . + . ID=Physo138389;Parent=Physo138389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 55839 56253 . + . ID=Physo138389.1;Parent=Physo138389;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_63 . CDS 55938 56253 . + 0 ID=Physo138389;Parent=Physo138389;rank=1 scaffold_63 . CDS 56295 57421 . + 0 ID=Physo138389;Parent=Physo138389;rank=2 scaffold_63 . exon 56295 57421 . + . ID=Physo138389.2;Parent=Physo138389;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . repeat_region 60344 60621 . - . description=Polinton-1_PI scaffold_63 . repeat_region 61707 62019 . - . description=GypsyPi-1c_LTR scaffold_63 . biological_region 62196 62198 0.999 - . logic_name=eponine scaffold_63 . repeat_region 63468 63545 . - . description=GypsyPi-1c_I-int scaffold_63 . biological_region 64160 64162 0.999 - . logic_name=eponine scaffold_63 . repeat_region 64377 64533 . - . description=GypsyPi-1c_I-int scaffold_63 . repeat_region 64535 65642 . - . description=GypsyPi-1c_I-int scaffold_63 ensembl protein_coding_gene 59398 60523 . - . ID=Physo138390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630009;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 59398 60523 . - . ID=Physo138390;Parent=Physo138390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 59398 59405 . - 0 ID=Physo138390;Parent=Physo138390;rank=2 scaffold_63 . exon 59398 59405 . - . ID=Physo138390.2;Parent=Physo138390;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 59452 60508 . - 0 ID=Physo138390;Parent=Physo138390;rank=1 scaffold_63 . exon 59452 60523 . - . ID=Physo138390.1;Parent=Physo138390;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_63 . repeat_region 78152 78221 . ? . description=dust scaffold_63 ensembl protein_coding_gene 71676 73524 . + . ID=Physo138391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630010;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 71676 73524 . + . ID=Physo138391;Parent=Physo138391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 71676 71802 . + 0 ID=Physo138391;Parent=Physo138391;rank=1 scaffold_63 . exon 71676 71802 . + . ID=Physo138391.1;Parent=Physo138391;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 71853 72664 . + 0 ID=Physo138391;Parent=Physo138391;rank=2 scaffold_63 . exon 71853 72664 . + . ID=Physo138391.2;Parent=Physo138391;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 72757 72856 . + 0 ID=Physo138391;Parent=Physo138391;rank=3 scaffold_63 . exon 72757 72856 . + . ID=Physo138391.3;Parent=Physo138391;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_63 . CDS 72925 73161 . + 0 ID=Physo138391;Parent=Physo138391;rank=4 scaffold_63 . exon 72925 73161 . + . ID=Physo138391.4;Parent=Physo138391;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_63 . CDS 73231 73448 . + 0 ID=Physo138391;Parent=Physo138391;rank=5 scaffold_63 . exon 73231 73524 . + . ID=Physo138391.5;Parent=Physo138391;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_63 ensembl protein_coding_gene 73574 74752 . - . ID=Physo138392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630011;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 73574 74752 . - . ID=Physo138392;Parent=Physo138392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 73574 74359 . - 0 ID=Physo138392;Parent=Physo138392;rank=3 scaffold_63 . exon 73574 74359 . - . ID=Physo138392.3;Parent=Physo138392;constitutive=1;rank=3 scaffold_63 . CDS 74444 74560 . - 0 ID=Physo138392;Parent=Physo138392;rank=2 scaffold_63 . exon 74444 74560 . - . ID=Physo138392.2;Parent=Physo138392;constitutive=1;rank=2 scaffold_63 . CDS 74636 74752 . - 0 ID=Physo138392;Parent=Physo138392;rank=1 scaffold_63 . exon 74636 74752 . - . ID=Physo138392.1;Parent=Physo138392;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 75832 76591 . + . ID=Physo138393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630012;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 75832 76591 . + . ID=Physo138393;Parent=Physo138393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 75832 76591 . + . ID=Physo138393.1;Parent=Physo138393;constitutive=1;ensembl_phase=-1;rank=1 scaffold_63 . CDS 75872 76591 . + 0 ID=Physo138393;Parent=Physo138393;rank=1 scaffold_63 ensembl protein_coding_gene 76679 78192 . - . ID=Physo138394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630013;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 76679 78192 . - . ID=Physo138394;Parent=Physo138394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 76679 78034 . - . ID=Physo138394.2;Parent=Physo138394;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_63 . CDS 76830 78034 . - 0 ID=Physo138394;Parent=Physo138394;rank=2 scaffold_63 . CDS 78131 78149 . - 0 ID=Physo138394;Parent=Physo138394;rank=1 scaffold_63 . exon 78131 78192 . - . ID=Physo138394.1;Parent=Physo138394;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_63 . biological_region 80219 80222 0.999 - . logic_name=eponine scaffold_63 . biological_region 80274 80275 0.999 + . logic_name=eponine scaffold_63 . biological_region 83707 83712 0.999 + . logic_name=eponine scaffold_63 . biological_region 83736 83740 0.999 + . logic_name=eponine scaffold_63 . biological_region 83796 83801 0.999 - . logic_name=eponine scaffold_63 . biological_region 83802 83804 0.999 + . logic_name=eponine scaffold_63 . biological_region 83814 83821 0.999 + . logic_name=eponine scaffold_63 . biological_region 83835 83836 0.999 - . logic_name=eponine scaffold_63 ensembl protein_coding_gene 81007 83813 . - . ID=Physo138395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630014;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 81007 83813 . - . ID=Physo138395;Parent=Physo138395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 81007 81036 . - 0 ID=Physo138395;Parent=Physo138395;rank=3 scaffold_63 . exon 81007 81036 . - . ID=Physo138395.3;Parent=Physo138395;constitutive=1;rank=3 scaffold_63 . CDS 81098 82288 . - 0 ID=Physo138395;Parent=Physo138395;rank=2 scaffold_63 . exon 81098 82288 . - . ID=Physo138395.2;Parent=Physo138395;constitutive=1;rank=2 scaffold_63 . CDS 82356 83813 . - 0 ID=Physo138395;Parent=Physo138395;rank=1 scaffold_63 . exon 82356 83813 . - . ID=Physo138395.1;Parent=Physo138395;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 84072 85433 . + . ID=Physo138396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630015;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 84072 85433 . + . ID=Physo138396;Parent=Physo138396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 84072 84182 . + 0 ID=Physo138396;Parent=Physo138396;rank=1 scaffold_63 . exon 84072 84182 . + . ID=Physo138396.1;Parent=Physo138396;constitutive=1;rank=1 scaffold_63 . CDS 84309 85349 . + 0 ID=Physo138396;Parent=Physo138396;rank=2 scaffold_63 . exon 84309 85433 . + . ID=Physo138396.2;Parent=Physo138396;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_63 ensembl protein_coding_gene 85554 92347 . - . ID=Physo157826;biotype=protein_coding;external_name=C_scaffold_63000004;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 85554 92347 . - . ID=Physo157826;Parent=Physo157826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 85554 85617 . - 0 ID=Physo157826;Parent=Physo157826;rank=17 scaffold_63 . exon 85554 85617 . - . ID=Physo157826.17;Parent=Physo157826;constitutive=1;ensembl_phase=2;rank=17 scaffold_63 . CDS 85696 85890 . - 0 ID=Physo157826;Parent=Physo157826;rank=16 scaffold_63 . exon 85696 85890 . - . ID=Physo157826.16;Parent=Physo157826;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=16 scaffold_63 . CDS 85915 86836 . - 0 ID=Physo157826;Parent=Physo157826;rank=15 scaffold_63 . exon 85915 86836 . - . ID=Physo157826.15;Parent=Physo157826;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=15 scaffold_63 . CDS 87011 87217 . - 0 ID=Physo157826;Parent=Physo157826;rank=14 scaffold_63 . exon 87011 87217 . - . ID=Physo157826.14;Parent=Physo157826;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_63 . CDS 87281 87350 . - 0 ID=Physo157826;Parent=Physo157826;rank=13 scaffold_63 . exon 87281 87350 . - . ID=Physo157826.13;Parent=Physo157826;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_63 . CDS 87453 87754 . - 0 ID=Physo157826;Parent=Physo157826;rank=12 scaffold_63 . exon 87453 87754 . - . ID=Physo157826.12;Parent=Physo157826;constitutive=1;ensembl_phase=1;rank=12 scaffold_63 . CDS 87920 88172 . - 0 ID=Physo157826;Parent=Physo157826;rank=11 scaffold_63 . exon 87920 88172 . - . ID=Physo157826.11;Parent=Physo157826;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_63 . CDS 88215 88573 . - 0 ID=Physo157826;Parent=Physo157826;rank=10 scaffold_63 . CDS 88685 88880 . - 0 ID=Physo157826;Parent=Physo157826;rank=9 scaffold_63 . CDS 88932 89984 . - 0 ID=Physo157826;Parent=Physo157826;rank=8 scaffold_63 . CDS 90015 90141 . - 0 ID=Physo157826;Parent=Physo157826;rank=7 scaffold_63 . CDS 90504 90741 . - 0 ID=Physo157826;Parent=Physo157826;rank=6 scaffold_63 . CDS 90817 91053 . - 0 ID=Physo157826;Parent=Physo157826;rank=5 scaffold_63 . CDS 91121 91220 . - 0 ID=Physo157826;Parent=Physo157826;rank=4 scaffold_63 . CDS 91291 91483 . - 0 ID=Physo157826;Parent=Physo157826;rank=3 scaffold_63 . CDS 91550 91897 . - 0 ID=Physo157826;Parent=Physo157826;rank=2 scaffold_63 . CDS 91965 92347 . - 0 ID=Physo157826;Parent=Physo157826;rank=1 scaffold_63 . repeat_region 89957 89984 . ? . description=trf scaffold_63 . repeat_region 89957 90026 . ? . description=dust scaffold_63 ensembl protein_coding_gene 92843 94774 . - . ID=Physo138398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630017;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 92843 94774 . - . ID=Physo138398;Parent=Physo138398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 92843 93084 . - 0 ID=Physo138398;Parent=Physo138398;rank=6 scaffold_63 . exon 92843 93084 . - . ID=Physo138398.6;Parent=Physo138398;constitutive=1;ensembl_phase=1;rank=6 scaffold_63 . CDS 93211 93447 . - 0 ID=Physo138398;Parent=Physo138398;rank=5 scaffold_63 . exon 93211 93447 . - . ID=Physo138398.5;Parent=Physo138398;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 93522 93621 . - 0 ID=Physo138398;Parent=Physo138398;rank=4 scaffold_63 . exon 93522 93621 . - . ID=Physo138398.4;Parent=Physo138398;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_63 . CDS 93683 93875 . - 0 ID=Physo138398;Parent=Physo138398;rank=3 scaffold_63 . exon 93683 93875 . - . ID=Physo138398.3;Parent=Physo138398;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 93957 94304 . - 0 ID=Physo138398;Parent=Physo138398;rank=2 scaffold_63 . exon 93957 94304 . - . ID=Physo138398.2;Parent=Physo138398;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_63 . CDS 94392 94774 . - 0 ID=Physo138398;Parent=Physo138398;rank=1 scaffold_63 . exon 94392 94774 . - . ID=Physo138398.1;Parent=Physo138398;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . exon 88215 88573 . - . ID=Physo157826.10;Parent=Physo157826;constitutive=1;ensembl_phase=1;rank=10 scaffold_63 . exon 88685 88880 . - . ID=Physo157826.9;Parent=Physo157826;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_63 . exon 88932 89984 . - . ID=Physo157826.8;Parent=Physo157826;constitutive=1;rank=8 scaffold_63 . exon 90015 90141 . - . ID=Physo157826.7;Parent=Physo157826;constitutive=1;ensembl_phase=2;rank=7 scaffold_63 . exon 90504 90741 . - . ID=Physo157826.6;Parent=Physo157826;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_63 . exon 90817 91053 . - . ID=Physo157826.5;Parent=Physo157826;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_63 . exon 91121 91220 . - . ID=Physo157826.4;Parent=Physo157826;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_63 . exon 91291 91483 . - . ID=Physo157826.3;Parent=Physo157826;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 . exon 91550 91897 . - . ID=Physo157826.2;Parent=Physo157826;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_63 . exon 91965 92347 . - . ID=Physo157826.1;Parent=Physo157826;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . biological_region 101183 101185 0.999 + . logic_name=eponine scaffold_63 . biological_region 101291 101296 0.999 + . logic_name=eponine scaffold_63 . biological_region 101292 101296 0.999 - . logic_name=eponine scaffold_63 . biological_region 101348 101350 0.999 - . logic_name=eponine scaffold_63 . biological_region 101464 101468 0.999 + . logic_name=eponine scaffold_63 . biological_region 101482 101484 0.999 + . logic_name=eponine scaffold_63 . biological_region 101514 101517 0.999 - . logic_name=eponine scaffold_63 . biological_region 101552 101552 0.999 - . logic_name=eponine scaffold_63 . biological_region 101574 101577 0.999 - . logic_name=eponine scaffold_63 . biological_region 101605 101607 0.999 + . logic_name=eponine scaffold_63 . biological_region 101843 101845 0.999 - . logic_name=eponine scaffold_63 . biological_region 102046 102050 0.999 - . logic_name=eponine scaffold_63 . biological_region 102661 102663 0.999 + . logic_name=eponine scaffold_63 . biological_region 102833 102838 0.999 + . logic_name=eponine scaffold_63 . biological_region 102839 102845 0.999 - . logic_name=eponine scaffold_63 . biological_region 103415 103416 0.999 + . logic_name=eponine scaffold_63 . biological_region 103439 103443 0.999 - . logic_name=eponine scaffold_63 . biological_region 105246 105246 0.999 + . logic_name=eponine scaffold_63 . biological_region 106219 106220 0.999 - . logic_name=eponine scaffold_63 . biological_region 106523 106527 0.999 - . logic_name=eponine scaffold_63 ensembl protein_coding_gene 98392 102294 . - . ID=Physo138399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630018;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 98392 102294 . - . ID=Physo138399;Parent=Physo138399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 98392 98603 . - 0 ID=Physo138399;Parent=Physo138399;rank=8 scaffold_63 . exon 98392 98603 . - . ID=Physo138399.8;Parent=Physo138399;constitutive=1;ensembl_phase=1;rank=8 scaffold_63 . CDS 98673 98909 . - 0 ID=Physo138399;Parent=Physo138399;rank=7 scaffold_63 . exon 98673 98909 . - . ID=Physo138399.7;Parent=Physo138399;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_63 . CDS 98984 99083 . - 0 ID=Physo138399;Parent=Physo138399;rank=6 scaffold_63 . exon 98984 99083 . - . ID=Physo138399.6;Parent=Physo138399;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_63 . CDS 99145 99337 . - 0 ID=Physo138399;Parent=Physo138399;rank=5 scaffold_63 . exon 99145 99337 . - . ID=Physo138399.5;Parent=Physo138399;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 . CDS 99419 99766 . - 0 ID=Physo138399;Parent=Physo138399;rank=4 scaffold_63 . exon 99419 99766 . - . ID=Physo138399.4;Parent=Physo138399;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_63 . CDS 99854 100172 . - 0 ID=Physo138399;Parent=Physo138399;rank=3 scaffold_63 . exon 99854 100172 . - . ID=Physo138399.3;Parent=Physo138399;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_63 . CDS 100592 102043 . - 0 ID=Physo138399;Parent=Physo138399;rank=2 scaffold_63 . exon 100592 102043 . - . ID=Physo138399.2;Parent=Physo138399;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 102195 102294 . - 0 ID=Physo138399;Parent=Physo138399;rank=1 scaffold_63 . exon 102195 102294 . - . ID=Physo138399.1;Parent=Physo138399;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 102671 105073 . + . ID=Physo138400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630019;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 102671 105073 . + . ID=Physo138400;Parent=Physo138400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 102671 103648 . + 0 ID=Physo138400;Parent=Physo138400;rank=1 scaffold_63 . exon 102671 103648 . + . ID=Physo138400.1;Parent=Physo138400;constitutive=1;rank=1 scaffold_63 . CDS 103722 104525 . + 0 ID=Physo138400;Parent=Physo138400;rank=2 scaffold_63 . exon 103722 104525 . + . ID=Physo138400.2;Parent=Physo138400;constitutive=1;rank=2 scaffold_63 . CDS 104600 105073 . + 0 ID=Physo138400;Parent=Physo138400;rank=3 scaffold_63 . exon 104600 105073 . + . ID=Physo138400.3;Parent=Physo138400;constitutive=1;rank=3 scaffold_63 ensembl protein_coding_gene 105228 107081 . - . ID=Physo157827;biotype=protein_coding;external_name=C_scaffold_63000005;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 105228 107081 . - . ID=Physo157827;Parent=Physo157827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 105228 105469 . - 0 ID=Physo157827;Parent=Physo157827;rank=6 scaffold_63 . exon 105228 105469 . - . ID=Physo157827.6;Parent=Physo157827;constitutive=1;ensembl_phase=1;rank=6 scaffold_63 . CDS 105550 105786 . - 0 ID=Physo157827;Parent=Physo157827;rank=5 scaffold_63 . exon 105550 105786 . - . ID=Physo157827.5;Parent=Physo157827;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 105863 105962 . - 0 ID=Physo157827;Parent=Physo157827;rank=4 scaffold_63 . exon 105863 105962 . - . ID=Physo157827.4;Parent=Physo157827;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_63 . CDS 106027 106219 . - 0 ID=Physo157827;Parent=Physo157827;rank=3 scaffold_63 . exon 106027 106219 . - . ID=Physo157827.3;Parent=Physo157827;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 106285 106632 . - 0 ID=Physo157827;Parent=Physo157827;rank=2 scaffold_63 . exon 106285 106632 . - . ID=Physo157827.2;Parent=Physo157827;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_63 . CDS 106699 107081 . - 0 ID=Physo157827;Parent=Physo157827;rank=1 scaffold_63 . exon 106699 107081 . - . ID=Physo157827.1;Parent=Physo157827;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . repeat_region 108044 108053 . ? . description=dust scaffold_63 . repeat_region 108979 108987 . ? . description=dust scaffold_63 . repeat_region 112702 112730 . ? . description=trf scaffold_63 . repeat_region 115410 115426 . ? . description=dust scaffold_63 . repeat_region 115939 115993 . ? . description=trf scaffold_63 . repeat_region 116983 117024 . ? . description=trf scaffold_63 ensembl protein_coding_gene 113877 114314 . - . ID=Physo109135;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_630001;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 113877 114314 . - . ID=Physo109135;Parent=Physo109135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 113877 114314 . - 0 ID=Physo109135;Parent=Physo109135;rank=1 scaffold_63 . exon 113877 114314 . - . ID=Physo109135.1;Parent=Physo109135;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 114828 115085 . - . ID=Physo119456;biotype=protein_coding;external_name=estExt_Genewise1.C_630022;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 114828 115085 . - . ID=Physo119456;Parent=Physo119456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 114828 115046 . - 0 ID=Physo119456;Parent=Physo119456;rank=1 scaffold_63 . exon 114828 115085 . - . ID=Physo119456.1;Parent=Physo119456;constitutive=1;ensembl_phase=-1;rank=1 scaffold_63 ensembl protein_coding_gene 109066 112542 . + . ID=Physo138402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630021;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 109066 112542 . + . ID=Physo138402;Parent=Physo138402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 109066 112542 . + 0 ID=Physo138402;Parent=Physo138402;rank=1 scaffold_63 . exon 109066 112542 . + . ID=Physo138402.1;Parent=Physo138402;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 116226 127609 . - . ID=Physo138404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630023;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 116226 127609 . - . ID=Physo138404;Parent=Physo138404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 116226 116637 . - 0 ID=Physo138404;Parent=Physo138404;rank=16 scaffold_63 . exon 116226 116637 . - . ID=Physo138404.16;Parent=Physo138404;constitutive=1;ensembl_phase=2;rank=16 scaffold_63 . CDS 116786 117249 . - 0 ID=Physo138404;Parent=Physo138404;rank=15 scaffold_63 . exon 116786 117249 . - . ID=Physo138404.15;Parent=Physo138404;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_63 . CDS 117274 117726 . - 0 ID=Physo138404;Parent=Physo138404;rank=14 scaffold_63 . exon 117274 117726 . - . ID=Physo138404.14;Parent=Physo138404;constitutive=1;rank=14 scaffold_63 . CDS 117748 117863 . - 0 ID=Physo138404;Parent=Physo138404;rank=13 scaffold_63 . CDS 117913 118240 . - 0 ID=Physo138404;Parent=Physo138404;rank=12 scaffold_63 . CDS 118275 118357 . - 0 ID=Physo138404;Parent=Physo138404;rank=11 scaffold_63 . CDS 118429 118855 . - 0 ID=Physo138404;Parent=Physo138404;rank=10 scaffold_63 . CDS 119225 119243 . - 0 ID=Physo138404;Parent=Physo138404;rank=9 scaffold_63 . CDS 119409 119627 . - 0 ID=Physo138404;Parent=Physo138404;rank=8 scaffold_63 . CDS 119866 121177 . - 0 ID=Physo138404;Parent=Physo138404;rank=7 scaffold_63 . CDS 121226 122174 . - 0 ID=Physo138404;Parent=Physo138404;rank=6 scaffold_63 . CDS 122278 122796 . - 0 ID=Physo138404;Parent=Physo138404;rank=5 scaffold_63 . CDS 122831 122885 . - 0 ID=Physo138404;Parent=Physo138404;rank=4 scaffold_63 . CDS 122933 124267 . - 0 ID=Physo138404;Parent=Physo138404;rank=3 scaffold_63 . CDS 124891 125151 . - 0 ID=Physo138404;Parent=Physo138404;rank=2 scaffold_63 . CDS 125325 127609 . - 0 ID=Physo138404;Parent=Physo138404;rank=1 scaffold_63 . biological_region 117685 117689 0.999 + . logic_name=eponine scaffold_63 . biological_region 117715 117717 0.999 + . logic_name=eponine scaffold_63 . biological_region 117746 117753 0.999 - . logic_name=eponine scaffold_63 . biological_region 118404 118406 0.999 + . logic_name=eponine scaffold_63 . biological_region 118428 118429 0.999 - . logic_name=eponine scaffold_63 . biological_region 118437 118440 0.999 - . logic_name=eponine scaffold_63 . biological_region 118462 118472 0.999 + . logic_name=eponine scaffold_63 . biological_region 118528 118531 0.999 + . logic_name=eponine scaffold_63 . biological_region 118544 118553 0.999 - . logic_name=eponine scaffold_63 . biological_region 118604 118613 0.999 - . logic_name=eponine scaffold_63 . biological_region 118616 118619 0.999 - . logic_name=eponine scaffold_63 . biological_region 118988 118991 0.999 - . logic_name=eponine scaffold_63 . biological_region 119052 119055 0.999 - . logic_name=eponine scaffold_63 . biological_region 119600 119603 0.999 - . logic_name=eponine scaffold_63 . biological_region 119980 119982 0.999 + . logic_name=eponine scaffold_63 . biological_region 119985 119986 0.999 - . logic_name=eponine scaffold_63 . biological_region 120020 120021 0.999 - . logic_name=eponine scaffold_63 . biological_region 120045 120047 0.999 - . logic_name=eponine scaffold_63 . biological_region 120099 120102 0.999 + . logic_name=eponine scaffold_63 . biological_region 120232 120235 0.999 - . logic_name=eponine scaffold_63 . biological_region 120254 120255 0.999 - . logic_name=eponine scaffold_63 . biological_region 120384 120385 0.999 + . logic_name=eponine scaffold_63 . biological_region 120401 120407 0.999 - . logic_name=eponine scaffold_63 . biological_region 120691 120694 0.999 - . logic_name=eponine scaffold_63 . biological_region 121620 121622 0.999 + . logic_name=eponine scaffold_63 . biological_region 121622 121626 0.999 - . logic_name=eponine scaffold_63 . biological_region 121640 121641 0.999 - . logic_name=eponine scaffold_63 . biological_region 121669 121670 0.999 - . logic_name=eponine scaffold_63 . biological_region 121696 121698 0.999 - . logic_name=eponine scaffold_63 . biological_region 122111 122112 0.999 - . logic_name=eponine scaffold_63 . biological_region 122168 122168 0.999 - . logic_name=eponine scaffold_63 . biological_region 122303 122305 0.999 + . logic_name=eponine scaffold_63 . biological_region 122900 122902 0.999 + . logic_name=eponine scaffold_63 . biological_region 123687 123689 0.999 + . logic_name=eponine scaffold_63 . biological_region 123787 123791 0.999 - . logic_name=eponine scaffold_63 . biological_region 124297 124299 0.999 + . logic_name=eponine scaffold_63 . biological_region 124486 124490 0.999 - . logic_name=eponine scaffold_63 . biological_region 125082 125088 0.999 + . logic_name=eponine scaffold_63 . biological_region 125616 125619 0.999 + . logic_name=eponine scaffold_63 . biological_region 125623 125625 0.999 - . logic_name=eponine scaffold_63 . biological_region 125660 125667 0.999 + . logic_name=eponine scaffold_63 . biological_region 125673 125673 0.999 - . logic_name=eponine scaffold_63 . biological_region 125707 125719 0.999 - . logic_name=eponine scaffold_63 . biological_region 125747 125748 0.999 - . logic_name=eponine scaffold_63 . biological_region 125928 125930 0.999 - . logic_name=eponine scaffold_63 . biological_region 126213 126218 0.999 + . logic_name=eponine scaffold_63 . biological_region 126622 126623 0.999 + . logic_name=eponine scaffold_63 . biological_region 126772 126776 0.999 + . logic_name=eponine scaffold_63 . biological_region 126847 126850 0.999 - . logic_name=eponine scaffold_63 . biological_region 126892 126894 0.999 - . logic_name=eponine scaffold_63 . exon 117748 117863 . - . ID=Physo138404.13;Parent=Physo138404;constitutive=1;ensembl_phase=1;rank=13 scaffold_63 . exon 117913 118240 . - . ID=Physo138404.12;Parent=Physo138404;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_63 . exon 118275 118357 . - . ID=Physo138404.11;Parent=Physo138404;constitutive=1;ensembl_phase=1;rank=11 scaffold_63 . exon 118429 118855 . - . ID=Physo138404.10;Parent=Physo138404;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_63 . exon 119225 119243 . - . ID=Physo138404.9;Parent=Physo138404;constitutive=1;ensembl_phase=2;rank=9 scaffold_63 . exon 119409 119627 . - . ID=Physo138404.8;Parent=Physo138404;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_63 . exon 119866 121177 . - . ID=Physo138404.7;Parent=Physo138404;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_63 . exon 121226 122174 . - . ID=Physo138404.6;Parent=Physo138404;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_63 . exon 122278 122796 . - . ID=Physo138404.5;Parent=Physo138404;constitutive=1;rank=5 scaffold_63 . exon 122831 122885 . - . ID=Physo138404.4;Parent=Physo138404;constitutive=1;ensembl_phase=2;rank=4 scaffold_63 . exon 122933 124267 . - . ID=Physo138404.3;Parent=Physo138404;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_63 . exon 124891 125151 . - . ID=Physo138404.2;Parent=Physo138404;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_63 . exon 125325 127609 . - . ID=Physo138404.1;Parent=Physo138404;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . repeat_region 127764 127771 . ? . description=dust scaffold_63 . repeat_region 128476 128519 . ? . description=trf scaffold_63 . repeat_region 132230 132248 . ? . description=dust scaffold_63 . repeat_region 132786 132793 . ? . description=dust scaffold_63 . repeat_region 136111 136263 . ? . description=trf scaffold_63 ensembl protein_coding_gene 116226 127609 . - . ID=Physo138404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630023;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 116226 127609 . - . ID=Physo138404;Parent=Physo138404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 116226 116637 . - 0 ID=Physo138404;Parent=Physo138404;rank=16 scaffold_63 . CDS 116786 117249 . - 0 ID=Physo138404;Parent=Physo138404;rank=15 scaffold_63 . CDS 117274 117726 . - 0 ID=Physo138404;Parent=Physo138404;rank=14 scaffold_63 . CDS 117748 117863 . - 0 ID=Physo138404;Parent=Physo138404;rank=13 scaffold_63 . CDS 117913 118240 . - 0 ID=Physo138404;Parent=Physo138404;rank=12 scaffold_63 . CDS 118275 118357 . - 0 ID=Physo138404;Parent=Physo138404;rank=11 scaffold_63 . CDS 118429 118855 . - 0 ID=Physo138404;Parent=Physo138404;rank=10 scaffold_63 . CDS 119225 119243 . - 0 ID=Physo138404;Parent=Physo138404;rank=9 scaffold_63 . CDS 119409 119627 . - 0 ID=Physo138404;Parent=Physo138404;rank=8 scaffold_63 . CDS 119866 121177 . - 0 ID=Physo138404;Parent=Physo138404;rank=7 scaffold_63 . CDS 121226 122174 . - 0 ID=Physo138404;Parent=Physo138404;rank=6 scaffold_63 . CDS 122278 122796 . - 0 ID=Physo138404;Parent=Physo138404;rank=5 scaffold_63 . CDS 122831 122885 . - 0 ID=Physo138404;Parent=Physo138404;rank=4 scaffold_63 . CDS 122933 124267 . - 0 ID=Physo138404;Parent=Physo138404;rank=3 scaffold_63 . CDS 124891 125151 . - 0 ID=Physo138404;Parent=Physo138404;rank=2 scaffold_63 . CDS 125325 127609 . - 0 ID=Physo138404;Parent=Physo138404;rank=1 scaffold_63 ensembl protein_coding_gene 133436 134005 . - . ID=Physo138405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630024;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 133436 134005 . - . ID=Physo138405;Parent=Physo138405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 133436 134005 . - 0 ID=Physo138405;Parent=Physo138405;rank=1 scaffold_63 . exon 133436 134005 . - . ID=Physo138405.1;Parent=Physo138405;constitutive=1;rank=1 scaffold_63 . biological_region 139262 139267 0.999 + . logic_name=eponine scaffold_63 . biological_region 142883 142885 0.999 + . logic_name=eponine scaffold_63 . biological_region 142917 142919 0.999 + . logic_name=eponine scaffold_63 . biological_region 143000 143003 0.999 - . logic_name=eponine scaffold_63 . biological_region 143044 143045 0.999 - . logic_name=eponine scaffold_63 . biological_region 143075 143076 0.999 - . logic_name=eponine scaffold_63 ensembl protein_coding_gene 139172 139958 . - . ID=Physo138406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630025;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 139172 139958 . - . ID=Physo138406;Parent=Physo138406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 139172 139376 . - 0 ID=Physo138406;Parent=Physo138406;rank=3 scaffold_63 . exon 139172 139376 . - . ID=Physo138406.3;Parent=Physo138406;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 139836 139897 . - 0 ID=Physo138406;Parent=Physo138406;rank=2 scaffold_63 . exon 139836 139897 . - . ID=Physo138406.2;Parent=Physo138406;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_63 . CDS 139923 139958 . - 0 ID=Physo138406;Parent=Physo138406;rank=1 scaffold_63 . exon 139923 139958 . - . ID=Physo138406.1;Parent=Physo138406;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 142125 143089 . - . ID=Physo138407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630026;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 142125 143089 . - . ID=Physo138407;Parent=Physo138407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 142125 143089 . - . ID=Physo138407.1;Parent=Physo138407;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_63 . CDS 142277 143089 . - 0 ID=Physo138407;Parent=Physo138407;rank=1 scaffold_63 ensembl protein_coding_gene 143271 144524 . + . ID=Physo138408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630027;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 143271 144524 . + . ID=Physo138408;Parent=Physo138408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 143271 143339 . + 0 ID=Physo138408;Parent=Physo138408;rank=1 scaffold_63 . exon 143271 143339 . + . ID=Physo138408.1;Parent=Physo138408;constitutive=1;rank=1 scaffold_63 . CDS 143412 144524 . + 0 ID=Physo138408;Parent=Physo138408;rank=2 scaffold_63 . exon 143412 144524 . + . ID=Physo138408.2;Parent=Physo138408;constitutive=1;rank=2 scaffold_63 ensembl protein_coding_gene 144868 145764 . + . ID=Physo138409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630028;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 144868 145764 . + . ID=Physo138409;Parent=Physo138409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 144868 144949 . + 0 ID=Physo138409;Parent=Physo138409;rank=1 scaffold_63 . exon 144868 144949 . + . ID=Physo138409.1;Parent=Physo138409;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 144980 145020 . + 0 ID=Physo138409;Parent=Physo138409;rank=2 scaffold_63 . exon 144980 145020 . + . ID=Physo138409.2;Parent=Physo138409;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 145099 145118 . + 0 ID=Physo138409;Parent=Physo138409;rank=3 scaffold_63 . exon 145099 145118 . + . ID=Physo138409.3;Parent=Physo138409;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_63 . CDS 145248 145338 . + 0 ID=Physo138409;Parent=Physo138409;rank=4 scaffold_63 . exon 145248 145338 . + . ID=Physo138409.4;Parent=Physo138409;constitutive=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 145411 145764 . + 0 ID=Physo138409;Parent=Physo138409;rank=5 scaffold_63 . exon 145411 145764 . + . ID=Physo138409.5;Parent=Physo138409;constitutive=1;rank=5 scaffold_63 . repeat_region 151822 151868 . ? . description=trf scaffold_63 . repeat_region 151890 151945 . ? . description=trf scaffold_63 . repeat_region 151898 151990 . ? . description=dust scaffold_63 . repeat_region 153671 153801 . + . description=Gypsy-2-LTR_PI scaffold_63 . repeat_region 153817 155968 . + . description=Gypsy-2-I_PI-int scaffold_63 . repeat_region 156643 156682 . ? . description=trf scaffold_63 ensembl protein_coding_gene 148284 150946 . - . ID=Physo138410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630029;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 148284 150946 . - . ID=Physo138410;Parent=Physo138410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 148284 148402 . - 0 ID=Physo138410;Parent=Physo138410;rank=3 scaffold_63 . exon 148284 148402 . - . ID=Physo138410.3;Parent=Physo138410;constitutive=1;ensembl_phase=1;rank=3 scaffold_63 . CDS 148439 150730 . - 0 ID=Physo138410;Parent=Physo138410;rank=2 scaffold_63 . exon 148439 150730 . - . ID=Physo138410.2;Parent=Physo138410;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 150811 150946 . - 0 ID=Physo138410;Parent=Physo138410;rank=1 scaffold_63 . exon 150811 150946 . - . ID=Physo138410.1;Parent=Physo138410;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 151670 152494 . - . ID=Physo138411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630030;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 151670 152494 . - . ID=Physo138411;Parent=Physo138411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 151670 152494 . - 0 ID=Physo138411;Parent=Physo138411;rank=1 scaffold_63 . exon 151670 152494 . - . ID=Physo138411.1;Parent=Physo138411;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 153861 154676 . + . ID=Physo138412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630031;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 153861 154676 . + . ID=Physo138412;Parent=Physo138412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 153861 154676 . + 0 ID=Physo138412;Parent=Physo138412;rank=1 scaffold_63 . exon 153861 154676 . + . ID=Physo138412.1;Parent=Physo138412;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 155964 159211 . - . ID=Physo138413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630032;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 155964 159211 . - . ID=Physo138413;Parent=Physo138413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 155964 156094 . - 0 ID=Physo138413;Parent=Physo138413;rank=2 scaffold_63 . exon 155964 156094 . - . ID=Physo138413.2;Parent=Physo138413;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 156130 159211 . - 0 ID=Physo138413;Parent=Physo138413;rank=1 scaffold_63 . exon 156130 159211 . - . ID=Physo138413.1;Parent=Physo138413;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . biological_region 156650 156657 0.999 + . logic_name=eponine scaffold_63 . biological_region 156716 156717 0.999 + . logic_name=eponine scaffold_63 . biological_region 156772 156774 0.999 + . logic_name=eponine scaffold_63 . biological_region 156796 156800 0.999 + . logic_name=eponine scaffold_63 . biological_region 156816 156818 0.999 + . logic_name=eponine scaffold_63 . biological_region 156845 156846 0.999 - . logic_name=eponine scaffold_63 . biological_region 156901 156903 0.999 + . logic_name=eponine scaffold_63 . biological_region 156926 156929 0.999 - . logic_name=eponine scaffold_63 . biological_region 157116 157119 0.999 + . logic_name=eponine scaffold_63 . biological_region 157244 157247 0.999 - . logic_name=eponine scaffold_63 . biological_region 157420 157422 0.999 + . logic_name=eponine scaffold_63 . biological_region 157492 157495 0.999 + . logic_name=eponine scaffold_63 . biological_region 157514 157519 0.999 + . logic_name=eponine scaffold_63 . biological_region 157542 157543 0.999 - . logic_name=eponine scaffold_63 . biological_region 157552 157559 0.999 - . logic_name=eponine scaffold_63 . biological_region 157567 157572 0.999 + . logic_name=eponine scaffold_63 . biological_region 157791 157792 0.999 - . logic_name=eponine scaffold_63 . biological_region 157832 157834 0.999 - . logic_name=eponine scaffold_63 . biological_region 157913 157914 0.999 - . logic_name=eponine scaffold_63 . biological_region 157944 157945 0.999 - . logic_name=eponine scaffold_63 . biological_region 158176 158178 0.999 + . logic_name=eponine scaffold_63 . biological_region 158221 158223 0.999 - . logic_name=eponine scaffold_63 . biological_region 158267 158269 0.999 - . logic_name=eponine scaffold_63 . biological_region 158437 158438 0.999 + . logic_name=eponine scaffold_63 . biological_region 158807 158811 0.999 + . logic_name=eponine scaffold_63 . biological_region 158938 158943 0.999 + . logic_name=eponine scaffold_63 . biological_region 159042 159046 0.999 + . logic_name=eponine scaffold_63 . biological_region 159058 159060 0.999 + . logic_name=eponine scaffold_63 . biological_region 159081 159089 0.999 + . logic_name=eponine scaffold_63 . biological_region 159088 159093 0.999 - . logic_name=eponine scaffold_63 . biological_region 159175 159177 0.999 + . logic_name=eponine scaffold_63 . biological_region 159211 159213 0.999 - . logic_name=eponine scaffold_63 . biological_region 159233 159237 0.999 + . logic_name=eponine scaffold_63 . biological_region 159269 159272 0.999 + . logic_name=eponine scaffold_63 . biological_region 159319 159326 0.999 - . logic_name=eponine scaffold_63 . biological_region 159815 159817 0.999 + . logic_name=eponine scaffold_63 . biological_region 159850 159855 0.999 - . logic_name=eponine scaffold_63 . biological_region 159900 159905 0.999 - . logic_name=eponine scaffold_63 . biological_region 160094 160097 0.999 - . logic_name=eponine scaffold_63 . biological_region 161736 161736 0.999 + . logic_name=eponine scaffold_63 . biological_region 162766 162767 0.999 + . logic_name=eponine scaffold_63 . biological_region 163339 163340 0.999 + . logic_name=eponine scaffold_63 ensembl protein_coding_gene 161696 164020 . + . ID=Physo138414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630033;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 161696 164020 . + . ID=Physo138414;Parent=Physo138414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 161696 164020 . + 0 ID=Physo138414;Parent=Physo138414;rank=1 scaffold_63 . exon 161696 164020 . + . ID=Physo138414.1;Parent=Physo138414;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 165723 166246 . + . ID=Physo138415;biotype=protein_coding;description=PsAvh251PsAvh255 [Source:UniProtKB/TrEMBL%3BAcc:E0W5B7];external_name=estExt_fgenesh1_pg.C_630034;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 165723 166246 . + . ID=Physo138415;Parent=Physo138415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 165723 165774 . + 0 ID=Physo138415;Parent=Physo138415;rank=1 scaffold_63 . exon 165723 165774 . + . ID=Physo138415.1;Parent=Physo138415;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 165801 166246 . + 0 ID=Physo138415;Parent=Physo138415;rank=2 scaffold_63 . exon 165801 166246 . + . ID=Physo138415.2;Parent=Physo138415;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . repeat_region 168633 168640 . ? . description=dust scaffold_63 . repeat_region 169997 170028 . ? . description=trf scaffold_63 . repeat_region 172405 173030 . ? . description=dust scaffold_63 . repeat_region 174479 174528 . ? . description=dust scaffold_63 . repeat_region 176129 176215 . ? . description=trf scaffold_63 ensembl protein_coding_gene 168811 170489 . - . ID=Physo138416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630035;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 168811 170489 . - . ID=Physo138416;Parent=Physo138416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 168811 169237 . - 0 ID=Physo138416;Parent=Physo138416;rank=4 scaffold_63 . exon 168811 169237 . - . ID=Physo138416.4;Parent=Physo138416;constitutive=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 169306 169453 . - 0 ID=Physo138416;Parent=Physo138416;rank=3 scaffold_63 . exon 169306 169453 . - . ID=Physo138416.3;Parent=Physo138416;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_63 . CDS 169720 169813 . - 0 ID=Physo138416;Parent=Physo138416;rank=2 scaffold_63 . exon 169720 169813 . - . ID=Physo138416.2;Parent=Physo138416;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . CDS 170130 170489 . - 0 ID=Physo138416;Parent=Physo138416;rank=1 scaffold_63 . exon 170130 170489 . - . ID=Physo138416.1;Parent=Physo138416;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 174714 176034 . - . ID=Physo138417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630036;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 174714 176034 . - . ID=Physo138417;Parent=Physo138417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 174714 175174 . - 0 ID=Physo138417;Parent=Physo138417;rank=2 scaffold_63 . exon 174714 175174 . - . ID=Physo138417.2;Parent=Physo138417;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 175257 176034 . - 0 ID=Physo138417;Parent=Physo138417;rank=1 scaffold_63 . exon 175257 176034 . - . ID=Physo138417.1;Parent=Physo138417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . biological_region 176394 176396 0.999 - . logic_name=eponine scaffold_63 . biological_region 176411 176418 0.999 - . logic_name=eponine scaffold_63 . biological_region 179641 179642 0.999 + . logic_name=eponine scaffold_63 . biological_region 179687 179687 0.999 - . logic_name=eponine scaffold_63 . biological_region 183396 183400 0.999 + . logic_name=eponine scaffold_63 . biological_region 183441 183444 0.999 - . logic_name=eponine scaffold_63 . biological_region 183446 183450 0.999 + . logic_name=eponine scaffold_63 . biological_region 184027 184031 0.999 + . logic_name=eponine scaffold_63 . biological_region 184060 184060 0.999 + . logic_name=eponine scaffold_63 . biological_region 184105 184111 0.999 - . logic_name=eponine scaffold_63 . biological_region 184130 184133 0.999 - . logic_name=eponine scaffold_63 . biological_region 184161 184170 0.999 - . logic_name=eponine scaffold_63 . biological_region 184162 184164 0.999 + . logic_name=eponine scaffold_63 . biological_region 184183 184188 0.999 + . logic_name=eponine scaffold_63 . biological_region 184236 184243 0.999 - . logic_name=eponine scaffold_63 . biological_region 184237 184241 0.999 + . logic_name=eponine scaffold_63 . biological_region 184265 184266 0.999 + . logic_name=eponine scaffold_63 . biological_region 184298 184304 0.999 - . logic_name=eponine scaffold_63 ensembl protein_coding_gene 183223 184683 . + . ID=Physo109136;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_630002;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 183223 184683 . + . ID=Physo109136;Parent=Physo109136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 183223 184491 . + 0 ID=Physo109136;Parent=Physo109136;rank=1 scaffold_63 . exon 183223 184683 . + . ID=Physo109136.1;Parent=Physo109136;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_63 ensembl protein_coding_gene 178618 179860 . - . ID=Physo138418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630037;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 178618 179860 . - . ID=Physo138418;Parent=Physo138418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 178618 178916 . - . ID=Physo138418.2;Parent=Physo138418;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_63 . CDS 178810 178916 . - 0 ID=Physo138418;Parent=Physo138418;rank=2 scaffold_63 . CDS 179608 179860 . - 0 ID=Physo138418;Parent=Physo138418;rank=1 scaffold_63 . exon 179608 179860 . - . ID=Physo138418.1;Parent=Physo138418;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 185129 186992 . + . ID=Physo138420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630039;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 185129 186992 . + . ID=Physo138420;Parent=Physo138420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 185129 185704 . + 0 ID=Physo138420;Parent=Physo138420;rank=1 scaffold_63 . exon 185129 185704 . + . ID=Physo138420.1;Parent=Physo138420;constitutive=1;rank=1 scaffold_63 . CDS 186021 186145 . + 0 ID=Physo138420;Parent=Physo138420;rank=2 scaffold_63 . exon 186021 186145 . + . ID=Physo138420.2;Parent=Physo138420;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_63 . CDS 186218 186308 . + 0 ID=Physo138420;Parent=Physo138420;rank=3 scaffold_63 . CDS 186621 186992 . + 0 ID=Physo138420;Parent=Physo138420;rank=4 scaffold_63 . repeat_region 187714 187763 . ? . description=dust scaffold_63 . repeat_region 188903 188952 . ? . description=dust scaffold_63 . repeat_region 191262 191269 . ? . description=dust scaffold_63 . repeat_region 192626 192657 . ? . description=trf scaffold_63 . repeat_region 193348 193852 . ? . description=dust scaffold_63 . repeat_region 194992 194999 . ? . description=dust scaffold_63 . exon 186218 186308 . + . ID=Physo138420.3;Parent=Physo138420;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 . exon 186621 186992 . + . ID=Physo138420.4;Parent=Physo138420;constitutive=1;rank=4 scaffold_63 ensembl protein_coding_gene 187111 187713 . - . ID=Physo138421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630040;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 187111 187713 . - . ID=Physo138421;Parent=Physo138421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 187111 187713 . - 0 ID=Physo138421;Parent=Physo138421;rank=1 scaffold_63 . exon 187111 187713 . - . ID=Physo138421.1;Parent=Physo138421;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 189251 190246 . - . ID=Physo138422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630041;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 189251 190246 . - . ID=Physo138422;Parent=Physo138422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 189251 189379 . - 0 ID=Physo138422;Parent=Physo138422;rank=4 scaffold_63 . exon 189251 189379 . - . ID=Physo138422.4;Parent=Physo138422;constitutive=1;rank=4 scaffold_63 . CDS 189456 189510 . - 0 ID=Physo138422;Parent=Physo138422;rank=3 scaffold_63 . exon 189456 189510 . - . ID=Physo138422.3;Parent=Physo138422;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 189648 189748 . - 0 ID=Physo138422;Parent=Physo138422;rank=2 scaffold_63 . exon 189648 189748 . - . ID=Physo138422.2;Parent=Physo138422;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_63 . CDS 189890 190246 . - 0 ID=Physo138422;Parent=Physo138422;rank=1 scaffold_63 . exon 189890 190246 . - . ID=Physo138422.1;Parent=Physo138422;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 191440 193118 . - . ID=Physo138423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630042;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 191440 193118 . - . ID=Physo138423;Parent=Physo138423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 191440 191866 . - 0 ID=Physo138423;Parent=Physo138423;rank=4 scaffold_63 . exon 191440 191866 . - . ID=Physo138423.4;Parent=Physo138423;constitutive=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 191935 192082 . - 0 ID=Physo138423;Parent=Physo138423;rank=3 scaffold_63 . exon 191935 192082 . - . ID=Physo138423.3;Parent=Physo138423;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_63 . CDS 192349 192442 . - 0 ID=Physo138423;Parent=Physo138423;rank=2 scaffold_63 . exon 192349 192442 . - . ID=Physo138423.2;Parent=Physo138423;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . CDS 192759 193118 . - 0 ID=Physo138423;Parent=Physo138423;rank=1 scaffold_63 . exon 192759 193118 . - . ID=Physo138423.1;Parent=Physo138423;constitutive=1;rank=1 scaffold_63 . biological_region 199594 199596 0.999 + . logic_name=eponine scaffold_63 . biological_region 201823 201825 0.999 + . logic_name=eponine scaffold_63 . biological_region 203610 203612 0.999 - . logic_name=eponine scaffold_63 . biological_region 203627 203635 0.999 - . logic_name=eponine scaffold_63 . biological_region 203651 203654 0.999 + . logic_name=eponine scaffold_63 . biological_region 203684 203687 0.999 + . logic_name=eponine scaffold_63 . biological_region 203768 203773 0.999 + . logic_name=eponine scaffold_63 . biological_region 203952 203953 0.999 - . logic_name=eponine scaffold_63 ensembl protein_coding_gene 199343 200625 . + . ID=Physo138424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630043;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 199343 200625 . + . ID=Physo138424;Parent=Physo138424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 199343 200304 . + 0 ID=Physo138424;Parent=Physo138424;rank=1 scaffold_63 . exon 199343 200304 . + . ID=Physo138424.1;Parent=Physo138424;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . CDS 200394 200625 . + 0 ID=Physo138424;Parent=Physo138424;rank=2 scaffold_63 . exon 200394 200625 . + . ID=Physo138424.2;Parent=Physo138424;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 ensembl protein_coding_gene 201930 205343 . - . ID=Physo138425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630044;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 201930 205343 . - . ID=Physo138425;Parent=Physo138425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 201930 202390 . - 0 ID=Physo138425;Parent=Physo138425;rank=9 scaffold_63 . exon 201930 202390 . - . ID=Physo138425.9;Parent=Physo138425;constitutive=1;ensembl_phase=1;rank=9 scaffold_63 . CDS 202473 203192 . - 0 ID=Physo138425;Parent=Physo138425;rank=8 scaffold_63 . exon 202473 203192 . - . ID=Physo138425.8;Parent=Physo138425;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_63 . CDS 203460 203974 . - 0 ID=Physo138425;Parent=Physo138425;rank=7 scaffold_63 . exon 203460 203974 . - . ID=Physo138425.7;Parent=Physo138425;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_63 . CDS 204050 204188 . - 0 ID=Physo138425;Parent=Physo138425;rank=6 scaffold_63 . exon 204050 204188 . - . ID=Physo138425.6;Parent=Physo138425;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_63 . CDS 204252 204344 . - 0 ID=Physo138425;Parent=Physo138425;rank=5 scaffold_63 . exon 204252 204344 . - . ID=Physo138425.5;Parent=Physo138425;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 204618 204677 . - 0 ID=Physo138425;Parent=Physo138425;rank=4 scaffold_63 . exon 204618 204677 . - . ID=Physo138425.4;Parent=Physo138425;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_63 . CDS 204767 204879 . - 0 ID=Physo138425;Parent=Physo138425;rank=3 scaffold_63 . exon 204767 204879 . - . ID=Physo138425.3;Parent=Physo138425;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 204940 205001 . - 0 ID=Physo138425;Parent=Physo138425;rank=2 scaffold_63 . exon 204940 205001 . - . ID=Physo138425.2;Parent=Physo138425;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_63 . CDS 205305 205343 . - 0 ID=Physo138425;Parent=Physo138425;rank=1 scaffold_63 . exon 205305 205343 . - . ID=Physo138425.1;Parent=Physo138425;constitutive=1;rank=1 scaffold_63 . repeat_region 208258 208267 . ? . description=dust scaffold_63 . repeat_region 210838 214873 . ? . description=dust scaffold_63 ensembl protein_coding_gene 210499 216496 . - . ID=Physo138427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630046;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 210499 216496 . - . ID=Physo138427;Parent=Physo138427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 210499 210538 . - 0 ID=Physo138427;Parent=Physo138427;rank=6 scaffold_63 . exon 210499 210538 . - . ID=Physo138427.6;Parent=Physo138427;constitutive=1;ensembl_phase=2;rank=6 scaffold_63 . CDS 214897 214965 . - 0 ID=Physo138427;Parent=Physo138427;rank=5 scaffold_63 . exon 214897 214965 . - . ID=Physo138427.5;Parent=Physo138427;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_63 . CDS 215047 215590 . - 0 ID=Physo138427;Parent=Physo138427;rank=4 scaffold_63 . exon 215047 215590 . - . ID=Physo138427.4;Parent=Physo138427;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_63 . CDS 215659 215979 . - 0 ID=Physo138427;Parent=Physo138427;rank=3 scaffold_63 . CDS 216077 216173 . - 0 ID=Physo138427;Parent=Physo138427;rank=2 scaffold_63 . CDS 216266 216496 . - 0 ID=Physo138427;Parent=Physo138427;rank=1 scaffold_63 ensembl protein_coding_gene 205880 207148 . - . ID=Physo157829;biotype=protein_coding;external_name=C_scaffold_63000007;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 205880 207148 . - . ID=Physo157829;Parent=Physo157829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 205880 206708 . - 0 ID=Physo157829;Parent=Physo157829;rank=2 scaffold_63 . exon 205880 206708 . - . ID=Physo157829.2;Parent=Physo157829;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 206730 207148 . - 0 ID=Physo157829;Parent=Physo157829;rank=1 scaffold_63 . exon 206730 207148 . - . ID=Physo157829.1;Parent=Physo157829;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . biological_region 215509 215509 0.999 + . logic_name=eponine scaffold_63 . biological_region 216371 216376 0.999 + . logic_name=eponine scaffold_63 . repeat_region 216666 216707 . ? . description=trf scaffold_63 . repeat_region 216666 216707 . ? . description=trf scaffold_63 . repeat_region 216666 216707 . + . description=(GCATG)n scaffold_63 . biological_region 219482 219485 0.999 - . logic_name=eponine scaffold_63 . biological_region 220105 220108 0.999 + . logic_name=eponine scaffold_63 . biological_region 220108 220111 0.999 - . logic_name=eponine scaffold_63 . biological_region 220179 220180 0.999 - . logic_name=eponine scaffold_63 . biological_region 220203 220207 0.999 - . logic_name=eponine scaffold_63 . biological_region 220323 220324 0.999 + . logic_name=eponine scaffold_63 . biological_region 220570 220570 0.999 + . logic_name=eponine scaffold_63 ensembl protein_coding_gene 216905 217915 . + . ID=Physo109138;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_630004;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 216905 217915 . + . ID=Physo109138;Parent=Physo109138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 216905 217915 . + 0 ID=Physo109138;Parent=Physo109138;rank=1 scaffold_63 . exon 216905 217915 . + . ID=Physo109138.1;Parent=Physo109138;constitutive=1;rank=1 scaffold_63 . exon 215659 215979 . - . ID=Physo138427.3;Parent=Physo138427;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_63 . exon 216077 216173 . - . ID=Physo138427.2;Parent=Physo138427;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . exon 216266 216496 . - . ID=Physo138427.1;Parent=Physo138427;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 218996 219617 . - . ID=Physo138429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630048;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 218996 219617 . - . ID=Physo138429;Parent=Physo138429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 218996 219232 . - 0 ID=Physo138429;Parent=Physo138429;rank=2 scaffold_63 . exon 218996 219232 . - . ID=Physo138429.2;Parent=Physo138429;constitutive=1;rank=2 scaffold_63 . CDS 219327 219617 . - 0 ID=Physo138429;Parent=Physo138429;rank=1 scaffold_63 . exon 219327 219617 . - . ID=Physo138429.1;Parent=Physo138429;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 219964 228591 . + . ID=Physo138430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630049;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 219964 228591 . + . ID=Physo138430;Parent=Physo138430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 219964 228591 . + 0 ID=Physo138430;Parent=Physo138430;rank=1 scaffold_63 . exon 219964 228591 . + . ID=Physo138430.1;Parent=Physo138430;constitutive=1;rank=1 scaffold_63 . repeat_region 232808 232815 . ? . description=dust scaffold_63 . repeat_region 233191 233198 . ? . description=dust scaffold_63 . repeat_region 234500 234508 . ? . description=dust scaffold_63 ensembl protein_coding_gene 234545 235759 . - . ID=Physo109139;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_630005;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 234545 235759 . - . ID=Physo109139;Parent=Physo109139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 234545 235759 . - . ID=Physo109139.1;Parent=Physo109139;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_63 . CDS 234599 235759 . - 0 ID=Physo109139;Parent=Physo109139;rank=1 scaffold_63 ensembl protein_coding_gene 229746 231629 . + . ID=Physo138431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630050;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 229746 231629 . + . ID=Physo138431;Parent=Physo138431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 229746 230138 . + 0 ID=Physo138431;Parent=Physo138431;rank=1 scaffold_63 . exon 229746 230138 . + . ID=Physo138431.1;Parent=Physo138431;constitutive=1;rank=1 scaffold_63 . CDS 230228 230657 . + 0 ID=Physo138431;Parent=Physo138431;rank=2 scaffold_63 . exon 230228 230657 . + . ID=Physo138431.2;Parent=Physo138431;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . CDS 230733 230843 . + 0 ID=Physo138431;Parent=Physo138431;rank=3 scaffold_63 . exon 230733 230843 . + . ID=Physo138431.3;Parent=Physo138431;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_63 . CDS 230927 231257 . + 0 ID=Physo138431;Parent=Physo138431;rank=4 scaffold_63 . exon 230927 231257 . + . ID=Physo138431.4;Parent=Physo138431;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_63 . CDS 231335 231629 . + 0 ID=Physo138431;Parent=Physo138431;rank=5 scaffold_63 . exon 231335 231629 . + . ID=Physo138431.5;Parent=Physo138431;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 ensembl protein_coding_gene 233374 234491 . + . ID=Physo138432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630051;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 233374 234491 . + . ID=Physo138432;Parent=Physo138432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 233374 233385 . + 0 ID=Physo138432;Parent=Physo138432;rank=1 scaffold_63 . exon 233374 233385 . + . ID=Physo138432.1;Parent=Physo138432;constitutive=1;rank=1 scaffold_63 . CDS 233551 233688 . + 0 ID=Physo138432;Parent=Physo138432;rank=2 scaffold_63 . exon 233551 233688 . + . ID=Physo138432.2;Parent=Physo138432;constitutive=1;rank=2 scaffold_63 . CDS 233934 234491 . + 0 ID=Physo138432;Parent=Physo138432;rank=3 scaffold_63 . exon 233934 234491 . + . ID=Physo138432.3;Parent=Physo138432;constitutive=1;rank=3 scaffold_63 . biological_region 235258 235258 0.999 - . logic_name=eponine scaffold_63 . biological_region 235270 235273 0.999 + . logic_name=eponine scaffold_63 . biological_region 235308 235315 0.999 + . logic_name=eponine scaffold_63 . biological_region 236167 236168 0.999 + . logic_name=eponine scaffold_63 . biological_region 236689 236695 0.999 + . logic_name=eponine scaffold_63 . biological_region 236801 236801 0.999 + . logic_name=eponine scaffold_63 . biological_region 236844 236846 0.999 - . logic_name=eponine scaffold_63 . biological_region 236850 236854 0.999 + . logic_name=eponine scaffold_63 . biological_region 236884 236891 0.999 - . logic_name=eponine scaffold_63 . biological_region 237541 237542 0.999 - . logic_name=eponine scaffold_63 . biological_region 237603 237606 0.999 - . logic_name=eponine scaffold_63 . biological_region 238205 238212 0.999 - . logic_name=eponine scaffold_63 . biological_region 238247 238250 0.999 - . logic_name=eponine scaffold_63 . biological_region 238262 238262 0.999 + . logic_name=eponine scaffold_63 . biological_region 238676 238681 0.999 - . logic_name=eponine scaffold_63 . biological_region 238719 238725 0.999 - . logic_name=eponine scaffold_63 . biological_region 242064 242065 0.999 + . logic_name=eponine scaffold_63 . biological_region 242163 242165 0.999 - . logic_name=eponine scaffold_63 . repeat_region 244169 244188 . ? . description=trf scaffold_63 . biological_region 244185 244189 0.999 - . logic_name=eponine scaffold_63 . biological_region 244214 244218 0.999 - . logic_name=eponine scaffold_63 ensembl protein_coding_gene 237712 238978 . + . ID=Physo109140;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_630006;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 237712 238978 . + . ID=Physo109140;Parent=Physo109140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 237712 238905 . + 0 ID=Physo109140;Parent=Physo109140;rank=1 scaffold_63 . exon 237712 238978 . + . ID=Physo109140.1;Parent=Physo109140;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_63 ensembl protein_coding_gene 239264 240704 . - . ID=Physo109141;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_630007;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 239264 240704 . - . ID=Physo109141;Parent=Physo109141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 239264 240704 . - . ID=Physo109141.1;Parent=Physo109141;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_63 . CDS 239352 240704 . - 0 ID=Physo109141;Parent=Physo109141;rank=1 scaffold_63 ensembl protein_coding_gene 241260 242898 . + . ID=Physo109142;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_630008;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 241260 242898 . + . ID=Physo109142;Parent=Physo109142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 241260 241315 . + . ID=Physo109142.1;Parent=Physo109142;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_63 . exon 241433 241466 . + . ID=Physo109142.2;Parent=Physo109142;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_63 . CDS 241442 241466 . + 0 ID=Physo109142;Parent=Physo109142;rank=1 scaffold_63 . CDS 241544 242898 . + 0 ID=Physo109142;Parent=Physo109142;rank=2 scaffold_63 . exon 241544 242898 . + . ID=Physo109142.3;Parent=Physo109142;constitutive=1;ensembl_phase=1;rank=3 scaffold_63 ensembl protein_coding_gene 243144 244837 . - . ID=Physo138437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630056;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 243144 244837 . - . ID=Physo138437;Parent=Physo138437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 243144 243209 . - 0 ID=Physo138437;Parent=Physo138437;rank=4 scaffold_63 . exon 243144 243209 . - . ID=Physo138437.4;Parent=Physo138437;constitutive=1;rank=4 scaffold_63 . CDS 243283 244455 . - 0 ID=Physo138437;Parent=Physo138437;rank=3 scaffold_63 . exon 243283 244455 . - . ID=Physo138437.3;Parent=Physo138437;constitutive=1;rank=3 scaffold_63 . CDS 244530 244593 . - 0 ID=Physo138437;Parent=Physo138437;rank=2 scaffold_63 . exon 244530 244593 . - . ID=Physo138437.2;Parent=Physo138437;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 244671 244837 . - 0 ID=Physo138437;Parent=Physo138437;rank=1 scaffold_63 . exon 244671 244837 . - . ID=Physo138437.1;Parent=Physo138437;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . repeat_region 246994 247021 . ? . description=dust scaffold_63 . repeat_region 247852 247863 . ? . description=dust scaffold_63 . repeat_region 248380 248387 . ? . description=dust scaffold_63 ensembl protein_coding_gene 254487 255413 . + . ID=Physo138438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630057;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 254487 255413 . + . ID=Physo138438;Parent=Physo138438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 254487 255413 . + 0 ID=Physo138438;Parent=Physo138438;rank=1 scaffold_63 . exon 254487 255413 . + . ID=Physo138438.1;Parent=Physo138438;constitutive=1;rank=1 scaffold_63 . repeat_region 260423 260726 . - . description=GypsyPi-1c_LTR scaffold_63 . repeat_region 260727 261046 . - . description=GypsyPi-1c_I-int scaffold_63 . biological_region 260980 260983 0.999 + . logic_name=eponine scaffold_63 . biological_region 261173 261178 0.999 + . logic_name=eponine scaffold_63 . biological_region 261526 261530 0.999 - . logic_name=eponine scaffold_63 . repeat_region 261605 266523 . - . description=GypsyPi-1c_I-int scaffold_63 . biological_region 262985 262985 0.999 - . logic_name=eponine scaffold_63 . biological_region 264314 264318 0.999 + . logic_name=eponine scaffold_63 ensembl protein_coding_gene 259034 263093 . + . ID=Physo138439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630058;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 259034 263093 . + . ID=Physo138439;Parent=Physo138439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 259034 259520 . + 0 ID=Physo138439;Parent=Physo138439;rank=1 scaffold_63 . exon 259034 259520 . + . ID=Physo138439.1;Parent=Physo138439;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 259563 259798 . + 0 ID=Physo138439;Parent=Physo138439;rank=2 scaffold_63 . exon 259563 259798 . + . ID=Physo138439.2;Parent=Physo138439;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 259913 260333 . + 0 ID=Physo138439;Parent=Physo138439;rank=3 scaffold_63 . exon 259913 260333 . + . ID=Physo138439.3;Parent=Physo138439;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_63 . CDS 260971 261505 . + 0 ID=Physo138439;Parent=Physo138439;rank=4 scaffold_63 . exon 260971 261505 . + . ID=Physo138439.4;Parent=Physo138439;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_63 . CDS 261559 262245 . + 0 ID=Physo138439;Parent=Physo138439;rank=5 scaffold_63 . exon 261559 262245 . + . ID=Physo138439.5;Parent=Physo138439;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_63 . CDS 262493 262725 . + 0 ID=Physo138439;Parent=Physo138439;rank=6 scaffold_63 . exon 262493 262725 . + . ID=Physo138439.6;Parent=Physo138439;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_63 . CDS 262753 263093 . + 0 ID=Physo138439;Parent=Physo138439;rank=7 scaffold_63 . exon 262753 263093 . + . ID=Physo138439.7;Parent=Physo138439;constitutive=1;ensembl_phase=1;rank=7 scaffold_63 ensembl protein_coding_gene 263502 267619 . - . ID=Physo138440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630059;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 263502 267619 . - . ID=Physo138440;Parent=Physo138440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 263502 264069 . - 0 ID=Physo138440;Parent=Physo138440;rank=4 scaffold_63 . exon 263502 264069 . - . ID=Physo138440.4;Parent=Physo138440;constitutive=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 264225 265666 . - 0 ID=Physo138440;Parent=Physo138440;rank=3 scaffold_63 . exon 264225 265666 . - . ID=Physo138440.3;Parent=Physo138440;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_63 . CDS 265713 266428 . - 0 ID=Physo138440;Parent=Physo138440;rank=2 scaffold_63 . CDS 266620 267619 . - 0 ID=Physo138440;Parent=Physo138440;rank=1 scaffold_63 . repeat_region 266084 266212 . ? . description=trf scaffold_63 . repeat_region 266197 266364 . ? . description=trf scaffold_63 . repeat_region 268847 268854 . ? . description=dust scaffold_63 . repeat_region 272012 272068 . ? . description=dust scaffold_63 . exon 265713 266428 . - . ID=Physo138440.2;Parent=Physo138440;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . exon 266620 267619 . - . ID=Physo138440.1;Parent=Physo138440;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 269224 271058 . - . ID=Physo138441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630060;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 269224 271058 . - . ID=Physo138441;Parent=Physo138441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 269224 269243 . - 0 ID=Physo138441;Parent=Physo138441;rank=5 scaffold_63 . exon 269224 269243 . - . ID=Physo138441.5;Parent=Physo138441;constitutive=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 269340 269601 . - 0 ID=Physo138441;Parent=Physo138441;rank=4 scaffold_63 . exon 269340 269601 . - . ID=Physo138441.4;Parent=Physo138441;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_63 . CDS 269669 270284 . - 0 ID=Physo138441;Parent=Physo138441;rank=3 scaffold_63 . exon 269669 270284 . - . ID=Physo138441.3;Parent=Physo138441;constitutive=1;ensembl_phase=2;rank=3 scaffold_63 . CDS 270419 271010 . - 0 ID=Physo138441;Parent=Physo138441;rank=2 scaffold_63 . exon 270419 271010 . - . ID=Physo138441.2;Parent=Physo138441;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_63 . CDS 271052 271058 . - 0 ID=Physo138441;Parent=Physo138441;rank=1 scaffold_63 . exon 271052 271058 . - . ID=Physo138441.1;Parent=Physo138441;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 271245 273014 . + . ID=Physo138442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630061;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 271245 273014 . + . ID=Physo138442;Parent=Physo138442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 271245 271422 . + 0 ID=Physo138442;Parent=Physo138442;rank=1 scaffold_63 . exon 271245 271422 . + . ID=Physo138442.1;Parent=Physo138442;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 271492 272208 . + 0 ID=Physo138442;Parent=Physo138442;rank=2 scaffold_63 . exon 271492 272208 . + . ID=Physo138442.2;Parent=Physo138442;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 272272 272762 . + 0 ID=Physo138442;Parent=Physo138442;rank=3 scaffold_63 . exon 272272 272762 . + . ID=Physo138442.3;Parent=Physo138442;constitutive=1;ensembl_phase=1;rank=3 scaffold_63 . CDS 272832 273014 . + 0 ID=Physo138442;Parent=Physo138442;rank=4 scaffold_63 . exon 272832 273014 . + . ID=Physo138442.4;Parent=Physo138442;constitutive=1;rank=4 scaffold_63 ensembl protein_coding_gene 273309 273827 . + . ID=Physo138443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630062;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 273309 273827 . + . ID=Physo138443;Parent=Physo138443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 273309 273827 . + 0 ID=Physo138443;Parent=Physo138443;rank=1 scaffold_63 . exon 273309 273827 . + . ID=Physo138443.1;Parent=Physo138443;constitutive=1;rank=1 scaffold_63 . biological_region 279762 279765 0.999 + . logic_name=eponine scaffold_63 . biological_region 279930 279931 0.999 + . logic_name=eponine scaffold_63 . biological_region 280133 280135 0.999 + . logic_name=eponine scaffold_63 ensembl protein_coding_gene 279767 281251 . - . ID=Physo138444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630063;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 279767 281251 . - . ID=Physo138444;Parent=Physo138444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 279767 281251 . - 0 ID=Physo138444;Parent=Physo138444;rank=1 scaffold_63 . exon 279767 281251 . - . ID=Physo138444.1;Parent=Physo138444;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 282787 283321 . + . ID=Physo138445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630064;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 282787 283321 . + . ID=Physo138445;Parent=Physo138445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 282787 282796 . + 0 ID=Physo138445;Parent=Physo138445;rank=1 scaffold_63 . exon 282787 282796 . + . ID=Physo138445.1;Parent=Physo138445;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 282939 283321 . + 0 ID=Physo138445;Parent=Physo138445;rank=2 scaffold_63 . exon 282939 283321 . + . ID=Physo138445.2;Parent=Physo138445;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . repeat_region 286438 288684 . + . description=GypsyPi-1c_I-int scaffold_63 . repeat_region 288741 288749 . ? . description=dust scaffold_63 . repeat_region 288968 289241 . + . description=GypsyPi-1c_I-int scaffold_63 ensembl protein_coding_gene 286992 287759 . + . ID=Physo109143;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_630009;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 286992 287759 . + . ID=Physo109143;Parent=Physo109143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 286992 287759 . + 0 ID=Physo109143;Parent=Physo109143;rank=1 scaffold_63 . exon 286992 287759 . + . ID=Physo109143.1;Parent=Physo109143;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 286029 286888 . + . ID=Physo138446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630065;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 286029 286888 . + . ID=Physo138446;Parent=Physo138446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 286029 286886 . + 0 ID=Physo138446;Parent=Physo138446;rank=1 scaffold_63 . exon 286029 286888 . + . ID=Physo138446.1;Parent=Physo138446;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_63 ensembl protein_coding_gene 290746 291934 . + . ID=Physo138448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630067;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 290746 291934 . + . ID=Physo138448;Parent=Physo138448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 290746 291817 . + 0 ID=Physo138448;Parent=Physo138448;rank=1 scaffold_63 . exon 290746 291817 . + . ID=Physo138448.1;Parent=Physo138448;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 291894 291934 . + 0 ID=Physo138448;Parent=Physo138448;rank=2 scaffold_63 . exon 291894 291934 . + . ID=Physo138448.2;Parent=Physo138448;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 ensembl protein_coding_gene 293597 298624 . + . ID=Physo138449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630068;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 293597 298624 . + . ID=Physo138449;Parent=Physo138449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 293597 293665 . + 0 ID=Physo138449;Parent=Physo138449;rank=1 scaffold_63 . exon 293597 293665 . + . ID=Physo138449.1;Parent=Physo138449;constitutive=1;rank=1 scaffold_63 . CDS 293752 295228 . + 0 ID=Physo138449;Parent=Physo138449;rank=2 scaffold_63 . CDS 295475 295744 . + 0 ID=Physo138449;Parent=Physo138449;rank=3 scaffold_63 . CDS 295855 296027 . + 0 ID=Physo138449;Parent=Physo138449;rank=4 scaffold_63 . CDS 296082 296183 . + 0 ID=Physo138449;Parent=Physo138449;rank=5 scaffold_63 . CDS 296307 296431 . + 0 ID=Physo138449;Parent=Physo138449;rank=6 scaffold_63 . CDS 296543 297175 . + 0 ID=Physo138449;Parent=Physo138449;rank=7 scaffold_63 . CDS 297229 297340 . + 0 ID=Physo138449;Parent=Physo138449;rank=8 scaffold_63 . CDS 297458 298624 . + 0 ID=Physo138449;Parent=Physo138449;rank=9 scaffold_63 . biological_region 297953 297961 0.999 + . logic_name=eponine scaffold_63 . biological_region 297975 297975 0.999 + . logic_name=eponine scaffold_63 . biological_region 297993 297999 0.999 - . logic_name=eponine scaffold_63 . biological_region 298011 298016 0.999 - . logic_name=eponine scaffold_63 . biological_region 298024 298026 0.999 + . logic_name=eponine scaffold_63 . biological_region 298028 298034 0.999 - . logic_name=eponine scaffold_63 . repeat_region 298031 298067 . ? . description=trf scaffold_63 . biological_region 298055 298059 0.999 - . logic_name=eponine scaffold_63 . repeat_region 298819 298846 . ? . description=trf scaffold_63 . exon 293752 295228 . + . ID=Physo138449.2;Parent=Physo138449;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . exon 295475 295744 . + . ID=Physo138449.3;Parent=Physo138449;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_63 . exon 295855 296027 . + . ID=Physo138449.4;Parent=Physo138449;constitutive=1;ensembl_phase=1;rank=4 scaffold_63 . exon 296082 296183 . + . ID=Physo138449.5;Parent=Physo138449;constitutive=1;rank=5 scaffold_63 . exon 296307 296431 . + . ID=Physo138449.6;Parent=Physo138449;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_63 . exon 296543 297175 . + . ID=Physo138449.7;Parent=Physo138449;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_63 . exon 297229 297340 . + . ID=Physo138449.8;Parent=Physo138449;constitutive=1;ensembl_phase=2;rank=8 scaffold_63 . exon 297458 298624 . + . ID=Physo138449.9;Parent=Physo138449;constitutive=1;rank=9 scaffold_63 ensembl protein_coding_gene 303203 306379 . + . ID=Physo138450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630069;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 303203 306379 . + . ID=Physo138450;Parent=Physo138450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 303203 303331 . + 0 ID=Physo138450;Parent=Physo138450;rank=1 scaffold_63 . exon 303203 303331 . + . ID=Physo138450.1;Parent=Physo138450;constitutive=1;rank=1 scaffold_63 . CDS 303497 303891 . + 0 ID=Physo138450;Parent=Physo138450;rank=2 scaffold_63 . exon 303497 303891 . + . ID=Physo138450.2;Parent=Physo138450;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_63 . CDS 303979 304802 . + 0 ID=Physo138450;Parent=Physo138450;rank=3 scaffold_63 . CDS 305342 305636 . + 0 ID=Physo138450;Parent=Physo138450;rank=4 scaffold_63 . CDS 305678 306188 . + 0 ID=Physo138450;Parent=Physo138450;rank=5 scaffold_63 . CDS 306242 306379 . + 0 ID=Physo138450;Parent=Physo138450;rank=6 scaffold_63 . repeat_region 305363 305419 . ? . description=dust scaffold_63 . repeat_region 306179 306186 . ? . description=dust scaffold_63 . repeat_region 310828 310836 . ? . description=dust scaffold_63 ensembl protein_coding_gene 309386 309646 . + . ID=Physo119437;biotype=protein_coding;external_name=estExt_Genewise1.C_630003;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 309386 309646 . + . ID=Physo119437;Parent=Physo119437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 309386 309646 . + . ID=Physo119437.1;Parent=Physo119437;constitutive=1;ensembl_phase=-1;rank=1 scaffold_63 . CDS 309428 309646 . + 0 ID=Physo119437;Parent=Physo119437;rank=1 scaffold_63 . exon 303979 304802 . + . ID=Physo138450.3;Parent=Physo138450;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_63 . exon 305342 305636 . + . ID=Physo138450.4;Parent=Physo138450;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_63 . exon 305678 306188 . + . ID=Physo138450.5;Parent=Physo138450;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 . exon 306242 306379 . + . ID=Physo138450.6;Parent=Physo138450;constitutive=1;rank=6 scaffold_63 ensembl protein_coding_gene 310878 312812 . - . ID=Physo138451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630070;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 310878 312812 . - . ID=Physo138451;Parent=Physo138451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 310878 311032 . - 0 ID=Physo138451;Parent=Physo138451;rank=5 scaffold_63 . exon 310878 311032 . - . ID=Physo138451.5;Parent=Physo138451;constitutive=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 311099 311640 . - 0 ID=Physo138451;Parent=Physo138451;rank=4 scaffold_63 . exon 311099 311640 . - . ID=Physo138451.4;Parent=Physo138451;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 311772 311784 . - 0 ID=Physo138451;Parent=Physo138451;rank=3 scaffold_63 . exon 311772 311784 . - . ID=Physo138451.3;Parent=Physo138451;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_63 . CDS 312021 312446 . - 0 ID=Physo138451;Parent=Physo138451;rank=2 scaffold_63 . exon 312021 312446 . - . ID=Physo138451.2;Parent=Physo138451;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 312782 312812 . - 0 ID=Physo138451;Parent=Physo138451;rank=1 scaffold_63 . exon 312782 312812 . - . ID=Physo138451.1;Parent=Physo138451;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . biological_region 314141 314144 0.999 + . logic_name=eponine scaffold_63 . repeat_region 322902 322933 . ? . description=trf scaffold_63 ensembl protein_coding_gene 316537 319979 . - . ID=Physo138452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630071;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 316537 319979 . - . ID=Physo138452;Parent=Physo138452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 316537 316595 . - 0 ID=Physo138452;Parent=Physo138452;rank=5 scaffold_63 . exon 316537 316595 . - . ID=Physo138452.5;Parent=Physo138452;constitutive=1;ensembl_phase=1;rank=5 scaffold_63 . CDS 316788 316815 . - 0 ID=Physo138452;Parent=Physo138452;rank=4 scaffold_63 . exon 316788 316815 . - . ID=Physo138452.4;Parent=Physo138452;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_63 . CDS 316937 317119 . - 0 ID=Physo138452;Parent=Physo138452;rank=3 scaffold_63 . exon 316937 317119 . - . ID=Physo138452.3;Parent=Physo138452;constitutive=1;rank=3 scaffold_63 . CDS 317435 319701 . - 0 ID=Physo138452;Parent=Physo138452;rank=2 scaffold_63 . exon 317435 319701 . - . ID=Physo138452.2;Parent=Physo138452;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . CDS 319739 319979 . - 0 ID=Physo138452;Parent=Physo138452;rank=1 scaffold_63 . exon 319739 319979 . - . ID=Physo138452.1;Parent=Physo138452;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 ensembl protein_coding_gene 322971 325753 . + . ID=Physo138453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630072;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 322971 325753 . + . ID=Physo138453;Parent=Physo138453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 322971 323400 . + 0 ID=Physo138453;Parent=Physo138453;rank=1 scaffold_63 . exon 322971 323400 . + . ID=Physo138453.1;Parent=Physo138453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . CDS 323698 324929 . + 0 ID=Physo138453;Parent=Physo138453;rank=2 scaffold_63 . CDS 324990 324997 . + 0 ID=Physo138453;Parent=Physo138453;rank=3 scaffold_63 . CDS 325162 325270 . + 0 ID=Physo138453;Parent=Physo138453;rank=4 scaffold_63 . CDS 325310 325753 . + 0 ID=Physo138453;Parent=Physo138453;rank=5 scaffold_63 . repeat_region 325330 325377 . ? . description=dust scaffold_63 . repeat_region 325921 325942 . ? . description=dust scaffold_63 . repeat_region 327613 327700 . ? . description=dust scaffold_63 ensembl protein_coding_gene 326144 327919 . - . ID=Physo109144;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_630010;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 326144 327919 . - . ID=Physo109144;Parent=Physo109144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 326144 327612 . - . ID=Physo109144.2;Parent=Physo109144;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_63 . CDS 326307 327612 . - 0 ID=Physo109144;Parent=Physo109144;rank=2 scaffold_63 . CDS 327894 327919 . - 0 ID=Physo109144;Parent=Physo109144;rank=1 scaffold_63 . exon 327894 327919 . - . ID=Physo109144.1;Parent=Physo109144;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . exon 323698 324929 . + . ID=Physo138453.2;Parent=Physo138453;constitutive=1;ensembl_phase=1;rank=2 scaffold_63 . exon 324990 324997 . + . ID=Physo138453.3;Parent=Physo138453;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_63 . exon 325162 325270 . + . ID=Physo138453.4;Parent=Physo138453;constitutive=1;ensembl_phase=2;rank=4 scaffold_63 . exon 325310 325753 . + . ID=Physo138453.5;Parent=Physo138453;constitutive=1;rank=5 scaffold_63 . biological_region 333023 333024 0.999 + . logic_name=eponine scaffold_63 . biological_region 333229 333233 0.999 - . logic_name=eponine scaffold_63 . biological_region 333317 333321 0.999 + . logic_name=eponine scaffold_63 . biological_region 333447 333448 0.999 - . logic_name=eponine scaffold_63 . biological_region 333548 333552 0.999 - . logic_name=eponine scaffold_63 . biological_region 333796 333798 0.999 + . logic_name=eponine scaffold_63 . biological_region 336408 336409 0.999 + . logic_name=eponine scaffold_63 . biological_region 336431 336435 0.999 - . logic_name=eponine scaffold_63 . biological_region 336887 336888 0.999 - . logic_name=eponine scaffold_63 . biological_region 337450 337455 0.999 - . logic_name=eponine scaffold_63 . biological_region 337535 337535 0.999 + . logic_name=eponine scaffold_63 ensembl protein_coding_gene 332942 333999 . + . ID=Physo138455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630074;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 332942 333999 . + . ID=Physo138455;Parent=Physo138455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 332942 333999 . + . ID=Physo138455.1;Parent=Physo138455;constitutive=1;ensembl_phase=-1;rank=1 scaffold_63 . CDS 332953 333999 . + 0 ID=Physo138455;Parent=Physo138455;rank=1 scaffold_63 ensembl protein_coding_gene 334766 337093 . + . ID=Physo138456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630075;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 334766 337093 . + . ID=Physo138456;Parent=Physo138456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 334766 334881 . + 0 ID=Physo138456;Parent=Physo138456;rank=1 scaffold_63 . exon 334766 334881 . + . ID=Physo138456.1;Parent=Physo138456;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . CDS 334974 335113 . + 0 ID=Physo138456;Parent=Physo138456;rank=2 scaffold_63 . exon 334974 335113 . + . ID=Physo138456.2;Parent=Physo138456;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 335195 335307 . + 0 ID=Physo138456;Parent=Physo138456;rank=3 scaffold_63 . exon 335195 335307 . + . ID=Physo138456.3;Parent=Physo138456;constitutive=1;ensembl_phase=1;rank=3 scaffold_63 . CDS 335377 335513 . + 0 ID=Physo138456;Parent=Physo138456;rank=4 scaffold_63 . exon 335377 335513 . + . ID=Physo138456.4;Parent=Physo138456;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_63 . CDS 335646 335748 . + 0 ID=Physo138456;Parent=Physo138456;rank=5 scaffold_63 . exon 335646 335748 . + . ID=Physo138456.5;Parent=Physo138456;constitutive=1;ensembl_phase=2;rank=5 scaffold_63 . CDS 335922 336038 . + 0 ID=Physo138456;Parent=Physo138456;rank=6 scaffold_63 . exon 335922 336038 . + . ID=Physo138456.6;Parent=Physo138456;constitutive=1;rank=6 scaffold_63 . CDS 336113 336160 . + 0 ID=Physo138456;Parent=Physo138456;rank=7 scaffold_63 . exon 336113 336160 . + . ID=Physo138456.7;Parent=Physo138456;constitutive=1;rank=7 scaffold_63 . CDS 336260 336264 . + 0 ID=Physo138456;Parent=Physo138456;rank=8 scaffold_63 . exon 336260 336264 . + . ID=Physo138456.8;Parent=Physo138456;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_63 . CDS 336516 336566 . + 0 ID=Physo138456;Parent=Physo138456;rank=9 scaffold_63 . exon 336516 336566 . + . ID=Physo138456.9;Parent=Physo138456;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_63 . CDS 336641 336968 . + 0 ID=Physo138456;Parent=Physo138456;rank=10 scaffold_63 . exon 336641 337093 . + . ID=Physo138456.10;Parent=Physo138456;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=10 scaffold_63 ensembl protein_coding_gene 337261 338445 . + . ID=Physo138457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630076;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 337261 338445 . + . ID=Physo138457;Parent=Physo138457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 337261 338445 . + 0 ID=Physo138457;Parent=Physo138457;rank=1 scaffold_63 . exon 337261 338445 . + . ID=Physo138457.1;Parent=Physo138457;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 338635 339655 . - . ID=Physo138458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630077;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 338635 339655 . - . ID=Physo138458;Parent=Physo138458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 338635 338824 . - . ID=Physo138458.3;Parent=Physo138458;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_63 . CDS 338637 338824 . - 0 ID=Physo138458;Parent=Physo138458;rank=3 scaffold_63 . CDS 339052 339097 . - 0 ID=Physo138458;Parent=Physo138458;rank=2 scaffold_63 . exon 339052 339097 . - . ID=Physo138458.2;Parent=Physo138458;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . CDS 339146 339655 . - 0 ID=Physo138458;Parent=Physo138458;rank=1 scaffold_63 . exon 339146 339655 . - . ID=Physo138458.1;Parent=Physo138458;constitutive=1;rank=1 scaffold_63 . repeat_region 344869 344900 . ? . description=trf scaffold_63 ensembl protein_coding_gene 343138 343578 . + . ID=Physo138459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630078;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 343138 343578 . + . ID=Physo138459;Parent=Physo138459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 343138 343151 . + 0 ID=Physo138459;Parent=Physo138459;rank=1 scaffold_63 . exon 343138 343151 . + . ID=Physo138459.1;Parent=Physo138459;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . CDS 343275 343578 . + 0 ID=Physo138459;Parent=Physo138459;rank=2 scaffold_63 . exon 343275 343578 . + . ID=Physo138459.2;Parent=Physo138459;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 ensembl protein_coding_gene 343863 347264 . - . ID=Physo138460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630079;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 343863 347264 . - . ID=Physo138460;Parent=Physo138460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 343863 347264 . - 0 ID=Physo138460;Parent=Physo138460;rank=1 scaffold_63 . exon 343863 347264 . - . ID=Physo138460.1;Parent=Physo138460;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 349572 350309 . + . ID=Physo138461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630080;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 349572 350309 . + . ID=Physo138461;Parent=Physo138461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 349572 350309 . + 0 ID=Physo138461;Parent=Physo138461;rank=1 scaffold_63 . exon 349572 350309 . + . ID=Physo138461.1;Parent=Physo138461;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 350370 352063 . - . ID=Physo138462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630081;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 350370 352063 . - . ID=Physo138462;Parent=Physo138462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 350370 351750 . - 0 ID=Physo138462;Parent=Physo138462;rank=2 scaffold_63 . exon 350370 351750 . - . ID=Physo138462.2;Parent=Physo138462;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 351852 352063 . - 0 ID=Physo138462;Parent=Physo138462;rank=1 scaffold_63 . exon 351852 352063 . - . ID=Physo138462.1;Parent=Physo138462;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 . biological_region 352521 352523 0.999 - . logic_name=eponine scaffold_63 . biological_region 356662 356667 0.999 + . logic_name=eponine scaffold_63 . biological_region 359988 359994 0.999 + . logic_name=eponine scaffold_63 . biological_region 360519 360523 0.999 - . logic_name=eponine scaffold_63 . biological_region 360927 360930 0.999 - . logic_name=eponine scaffold_63 . biological_region 360935 360938 0.999 - . logic_name=eponine scaffold_63 . biological_region 362212 362218 0.999 - . logic_name=eponine scaffold_63 ensembl protein_coding_gene 356405 358558 . - . ID=Physo138463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630082;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 356405 358558 . - . ID=Physo138463;Parent=Physo138463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 356405 357160 . - 0 ID=Physo138463;Parent=Physo138463;rank=4 scaffold_63 . exon 356405 357160 . - . ID=Physo138463.4;Parent=Physo138463;constitutive=1;rank=4 scaffold_63 . CDS 357260 357994 . - 0 ID=Physo138463;Parent=Physo138463;rank=3 scaffold_63 . exon 357260 357994 . - . ID=Physo138463.3;Parent=Physo138463;constitutive=1;rank=3 scaffold_63 . CDS 358080 358182 . - 0 ID=Physo138463;Parent=Physo138463;rank=2 scaffold_63 . exon 358080 358182 . - . ID=Physo138463.2;Parent=Physo138463;constitutive=1;ensembl_phase=2;rank=2 scaffold_63 . CDS 358347 358558 . - 0 ID=Physo138463;Parent=Physo138463;rank=1 scaffold_63 . exon 358347 358558 . - . ID=Physo138463.1;Parent=Physo138463;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_63 ensembl protein_coding_gene 359546 360589 . - . ID=Physo138464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630083;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 359546 360589 . - . ID=Physo138464;Parent=Physo138464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 359546 360589 . - 0 ID=Physo138464;Parent=Physo138464;rank=1 scaffold_63 . exon 359546 360589 . - . ID=Physo138464.1;Parent=Physo138464;constitutive=1;rank=1 scaffold_63 . repeat_region 364465 364489 . ? . description=trf scaffold_63 ensembl protein_coding_gene 362398 362805 . + . ID=Physo138465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630084;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 362398 362805 . + . ID=Physo138465;Parent=Physo138465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 362398 362805 . + 0 ID=Physo138465;Parent=Physo138465;rank=1 scaffold_63 . exon 362398 362805 . + . ID=Physo138465.1;Parent=Physo138465;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 365763 370207 . + . ID=Physo138467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630086;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 365763 370207 . + . ID=Physo138467;Parent=Physo138467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 365763 366824 . + 0 ID=Physo138467;Parent=Physo138467;rank=1 scaffold_63 . exon 365763 366824 . + . ID=Physo138467.1;Parent=Physo138467;constitutive=1;rank=1 scaffold_63 . CDS 366991 368323 . + 0 ID=Physo138467;Parent=Physo138467;rank=2 scaffold_63 . exon 366991 368323 . + . ID=Physo138467.2;Parent=Physo138467;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_63 . CDS 368407 369396 . + 0 ID=Physo138467;Parent=Physo138467;rank=3 scaffold_63 . exon 368407 369396 . + . ID=Physo138467.3;Parent=Physo138467;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_63 . CDS 369477 370207 . + 0 ID=Physo138467;Parent=Physo138467;rank=4 scaffold_63 . exon 369477 370207 . + . ID=Physo138467.4;Parent=Physo138467;constitutive=1;ensembl_phase=1;rank=4 scaffold_63 ensembl protein_coding_gene 370368 372455 . - . ID=Physo138468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630087;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 370368 372455 . - . ID=Physo138468;Parent=Physo138468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 370368 372455 . - 0 ID=Physo138468;Parent=Physo138468;rank=1 scaffold_63 . exon 370368 372455 . - . ID=Physo138468.1;Parent=Physo138468;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 363625 365261 . - . ID=Physo157832;biotype=protein_coding;external_name=C_scaffold_63000010;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 363625 365261 . - . ID=Physo157832;Parent=Physo157832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 363625 364348 . - 0 ID=Physo157832;Parent=Physo157832;rank=4 scaffold_63 . exon 363625 364348 . - . ID=Physo157832.4;Parent=Physo157832;constitutive=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 364422 364532 . - 0 ID=Physo157832;Parent=Physo157832;rank=3 scaffold_63 . exon 364422 364532 . - . ID=Physo157832.3;Parent=Physo157832;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_63 . CDS 364744 364876 . - 0 ID=Physo157832;Parent=Physo157832;rank=2 scaffold_63 . exon 364744 364876 . - . ID=Physo157832.2;Parent=Physo157832;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_63 . CDS 365066 365261 . - 0 ID=Physo157832;Parent=Physo157832;rank=1 scaffold_63 . exon 365066 365261 . - . ID=Physo157832.1;Parent=Physo157832;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_63 . biological_region 372320 372322 0.999 + . logic_name=eponine scaffold_63 . biological_region 372329 372329 0.999 + . logic_name=eponine scaffold_63 . biological_region 372337 372340 0.999 + . logic_name=eponine scaffold_63 . biological_region 372394 372398 0.999 + . logic_name=eponine scaffold_63 . biological_region 372398 372401 0.999 - . logic_name=eponine scaffold_63 . biological_region 372439 372447 0.999 - . logic_name=eponine scaffold_63 . biological_region 374054 374056 0.999 + . logic_name=eponine scaffold_63 . biological_region 376180 376180 0.999 - . logic_name=eponine scaffold_63 . biological_region 376439 376439 0.999 + . logic_name=eponine scaffold_63 . biological_region 377157 377159 0.999 - . logic_name=eponine scaffold_63 . biological_region 377591 377596 0.999 - . logic_name=eponine scaffold_63 . repeat_region 378722 378785 . ? . description=dust scaffold_63 . biological_region 378799 378804 0.999 - . logic_name=eponine scaffold_63 . biological_region 378816 378816 0.999 + . logic_name=eponine scaffold_63 . repeat_region 379010 379066 . ? . description=dust scaffold_63 . repeat_region 379170 379233 . ? . description=dust scaffold_63 . biological_region 379644 379645 0.999 - . logic_name=eponine scaffold_63 . biological_region 379710 379715 0.999 - . logic_name=eponine scaffold_63 . biological_region 379864 379866 0.999 + . logic_name=eponine scaffold_63 . biological_region 379975 379980 0.999 - . logic_name=eponine scaffold_63 . repeat_region 381760 381810 . ? . description=dust scaffold_63 ensembl protein_coding_gene 373777 374896 . - . ID=Physo138469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630088;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 373777 374896 . - . ID=Physo138469;Parent=Physo138469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 373777 374456 . - . ID=Physo138469.2;Parent=Physo138469;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_63 . CDS 373778 374456 . - 0 ID=Physo138469;Parent=Physo138469;rank=2 scaffold_63 . CDS 374749 374822 . - 0 ID=Physo138469;Parent=Physo138469;rank=1 scaffold_63 . exon 374749 374896 . - . ID=Physo138469.1;Parent=Physo138469;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_63 ensembl protein_coding_gene 375176 378462 . - . ID=Physo138470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630089;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 375176 378462 . - . ID=Physo138470;Parent=Physo138470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . exon 375176 376625 . - . ID=Physo138470.7;Parent=Physo138470;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_63 . CDS 375346 376625 . - 0 ID=Physo138470;Parent=Physo138470;rank=7 scaffold_63 . CDS 377146 377743 . - 0 ID=Physo138470;Parent=Physo138470;rank=6 scaffold_63 . exon 377146 377743 . - . ID=Physo138470.6;Parent=Physo138470;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_63 . CDS 377809 377883 . - 0 ID=Physo138470;Parent=Physo138470;rank=5 scaffold_63 . exon 377809 377883 . - . ID=Physo138470.5;Parent=Physo138470;constitutive=1;rank=5 scaffold_63 . CDS 377966 378020 . - 0 ID=Physo138470;Parent=Physo138470;rank=4 scaffold_63 . exon 377966 378020 . - . ID=Physo138470.4;Parent=Physo138470;constitutive=1;ensembl_phase=2;rank=4 scaffold_63 . CDS 378106 378137 . - 0 ID=Physo138470;Parent=Physo138470;rank=3 scaffold_63 . exon 378106 378137 . - . ID=Physo138470.3;Parent=Physo138470;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_63 . CDS 378259 378432 . - 0 ID=Physo138470;Parent=Physo138470;rank=2 scaffold_63 . exon 378259 378432 . - . ID=Physo138470.2;Parent=Physo138470;constitutive=1;rank=2 scaffold_63 . CDS 378457 378462 . - 0 ID=Physo138470;Parent=Physo138470;rank=1 scaffold_63 . exon 378457 378462 . - . ID=Physo138470.1;Parent=Physo138470;constitutive=1;rank=1 scaffold_63 ensembl protein_coding_gene 378703 379969 . + . ID=Physo138471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630090;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 378703 379969 . + . ID=Physo138471;Parent=Physo138471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 378703 379245 . + 0 ID=Physo138471;Parent=Physo138471;rank=1 scaffold_63 . exon 378703 379245 . + . ID=Physo138471.1;Parent=Physo138471;constitutive=1;rank=1 scaffold_63 . CDS 379319 379969 . + 0 ID=Physo138471;Parent=Physo138471;rank=2 scaffold_63 . exon 379319 379969 . + . ID=Physo138471.2;Parent=Physo138471;constitutive=1;rank=2 scaffold_63 . repeat_region 382016 382049 . ? . description=trf scaffold_63 ensembl protein_coding_gene 390065 391051 . + . ID=Physo138472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_630091;logic_name=jgi_physo1_1 scaffold_63 ensembl transcript 390065 391051 . + . ID=Physo138472;Parent=Physo138472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_63 . CDS 390065 391051 . + 0 ID=Physo138472;Parent=Physo138472;rank=1 scaffold_63 . exon 390065 391051 . + . ID=Physo138472.1;Parent=Physo138472;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_64 1 393545 scaffold_64 . biological_region 874 878 0.999 + . logic_name=eponine scaffold_64 . repeat_region 945 1357 . ? . description=trf scaffold_64 . repeat_region 993 1056 . ? . description=dust scaffold_64 . biological_region 1130 1132 0.999 - . logic_name=eponine scaffold_64 . biological_region 1223 1226 0.999 + . logic_name=eponine scaffold_64 . repeat_region 1281 1374 . ? . description=dust scaffold_64 . biological_region 1317 1321 0.999 - . logic_name=eponine scaffold_64 . repeat_region 1423 1463 . ? . description=trf scaffold_64 . repeat_region 1557 1938 . ? . description=dust scaffold_64 . repeat_region 2355 2368 . ? . description=dust scaffold_64 . biological_region 2524 2525 0.999 - . logic_name=eponine scaffold_64 . repeat_region 5274 5314 . ? . description=trf scaffold_64 . biological_region 5894 5894 0.999 + . logic_name=eponine scaffold_64 ensembl protein_coding_gene 8084 8980 . + . ID=Physo109145;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_640001;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 8084 8980 . + . ID=Physo109145;Parent=Physo109145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 8084 8980 . + 0 ID=Physo109145;Parent=Physo109145;rank=1 scaffold_64 . exon 8084 8980 . + . ID=Physo109145.1;Parent=Physo109145;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 962 1483 . + . ID=Physo138473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640001;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 962 1483 . + . ID=Physo138473;Parent=Physo138473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 962 1483 . + 0 ID=Physo138473;Parent=Physo138473;rank=1 scaffold_64 . exon 962 1483 . + . ID=Physo138473.1;Parent=Physo138473;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 2955 5159 . + . ID=Physo138474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640002;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 2955 5159 . + . ID=Physo138474;Parent=Physo138474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 2955 4833 . + 0 ID=Physo138474;Parent=Physo138474;rank=1 scaffold_64 . exon 2955 4833 . + . ID=Physo138474.1;Parent=Physo138474;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . CDS 4912 5159 . + 0 ID=Physo138474;Parent=Physo138474;rank=2 scaffold_64 . exon 4912 5159 . + . ID=Physo138474.2;Parent=Physo138474;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 ensembl protein_coding_gene 7506 7981 . + . ID=Physo138475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640003;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 7506 7981 . + . ID=Physo138475;Parent=Physo138475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 7506 7525 . + 0 ID=Physo138475;Parent=Physo138475;rank=1 scaffold_64 . exon 7506 7525 . + . ID=Physo138475.1;Parent=Physo138475;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 7636 7981 . + 0 ID=Physo138475;Parent=Physo138475;rank=2 scaffold_64 . exon 7636 7981 . + . ID=Physo138475.2;Parent=Physo138475;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 ensembl protein_coding_gene 12742 14524 . - . ID=Physo138477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640005;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 12742 14524 . - . ID=Physo138477;Parent=Physo138477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 12742 13704 . - . ID=Physo138477.2;Parent=Physo138477;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_64 . CDS 12950 13704 . - 0 ID=Physo138477;Parent=Physo138477;rank=2 scaffold_64 . CDS 14080 14524 . - 0 ID=Physo138477;Parent=Physo138477;rank=1 scaffold_64 . exon 14080 14524 . - . ID=Physo138477.1;Parent=Physo138477;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 ensembl protein_coding_gene 15356 16042 . + . ID=Physo138478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640006;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 15356 16042 . + . ID=Physo138478;Parent=Physo138478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 15356 16042 . + 0 ID=Physo138478;Parent=Physo138478;rank=1 scaffold_64 . exon 15356 16042 . + . ID=Physo138478.1;Parent=Physo138478;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 16151 18343 . - . ID=Physo138479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640007;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 16151 18343 . - . ID=Physo138479;Parent=Physo138479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 16151 18343 . - 0 ID=Physo138479;Parent=Physo138479;rank=1 scaffold_64 . exon 16151 18343 . - . ID=Physo138479.1;Parent=Physo138479;constitutive=1;rank=1 scaffold_64 . biological_region 19707 19709 0.999 - . logic_name=eponine scaffold_64 . biological_region 20360 20364 0.999 + . logic_name=eponine scaffold_64 . biological_region 20387 20394 0.999 + . logic_name=eponine scaffold_64 . biological_region 20457 20460 0.999 - . logic_name=eponine scaffold_64 . biological_region 20483 20486 0.999 - . logic_name=eponine scaffold_64 . repeat_region 20507 20556 . ? . description=dust scaffold_64 . biological_region 20546 20548 0.999 - . logic_name=eponine scaffold_64 . biological_region 20901 20903 0.999 + . logic_name=eponine scaffold_64 . biological_region 21790 21791 0.999 + . logic_name=eponine scaffold_64 . biological_region 22947 22949 0.999 + . logic_name=eponine scaffold_64 . biological_region 24570 24576 0.999 + . logic_name=eponine scaffold_64 . biological_region 25348 25352 0.999 + . logic_name=eponine scaffold_64 . biological_region 25409 25417 0.999 - . logic_name=eponine scaffold_64 . biological_region 26097 26100 0.999 + . logic_name=eponine scaffold_64 . biological_region 26680 26685 0.999 - . logic_name=eponine scaffold_64 . biological_region 26761 26764 0.999 + . logic_name=eponine scaffold_64 . biological_region 26778 26783 0.999 + . logic_name=eponine scaffold_64 . biological_region 26833 26835 0.999 - . logic_name=eponine scaffold_64 . biological_region 26939 26942 0.999 - . logic_name=eponine scaffold_64 . biological_region 27012 27014 0.999 - . logic_name=eponine scaffold_64 . biological_region 27020 27021 0.999 + . logic_name=eponine scaffold_64 . biological_region 27032 27034 0.999 - . logic_name=eponine scaffold_64 . biological_region 27049 27051 0.999 - . logic_name=eponine scaffold_64 . biological_region 27142 27150 0.999 - . logic_name=eponine scaffold_64 . biological_region 27200 27207 0.999 + . logic_name=eponine scaffold_64 . biological_region 27250 27251 0.999 - . logic_name=eponine scaffold_64 . biological_region 28663 28663 0.999 + . logic_name=eponine scaffold_64 . repeat_region 28772 28793 . ? . description=dust scaffold_64 . biological_region 29166 29171 0.999 + . logic_name=eponine scaffold_64 . biological_region 29236 29239 0.999 - . logic_name=eponine scaffold_64 ensembl protein_coding_gene 22756 23985 . - . ID=Physo138481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640009;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 22756 23985 . - . ID=Physo138481;Parent=Physo138481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 22756 23790 . - 0 ID=Physo138481;Parent=Physo138481;rank=2 scaffold_64 . exon 22756 23790 . - . ID=Physo138481.2;Parent=Physo138481;constitutive=1;rank=2 scaffold_64 . CDS 23878 23985 . - 0 ID=Physo138481;Parent=Physo138481;rank=1 scaffold_64 . exon 23878 23985 . - . ID=Physo138481.1;Parent=Physo138481;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 25222 26578 . - . ID=Physo138482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640010;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 25222 26578 . - . ID=Physo138482;Parent=Physo138482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 25222 26523 . - 0 ID=Physo138482;Parent=Physo138482;rank=1 scaffold_64 . exon 25222 26578 . - . ID=Physo138482.1;Parent=Physo138482;constitutive=1;ensembl_phase=-1;rank=1 scaffold_64 ensembl protein_coding_gene 29065 31521 . + . ID=Physo138483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640011;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 29065 31521 . + . ID=Physo138483;Parent=Physo138483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 29065 29580 . + 0 ID=Physo138483;Parent=Physo138483;rank=1 scaffold_64 . exon 29065 29580 . + . ID=Physo138483.1;Parent=Physo138483;constitutive=1;rank=1 scaffold_64 . CDS 29676 29920 . + 0 ID=Physo138483;Parent=Physo138483;rank=2 scaffold_64 . CDS 29987 30363 . + 0 ID=Physo138483;Parent=Physo138483;rank=3 scaffold_64 . CDS 30496 30570 . + 0 ID=Physo138483;Parent=Physo138483;rank=4 scaffold_64 . CDS 30643 30731 . + 0 ID=Physo138483;Parent=Physo138483;rank=5 scaffold_64 . CDS 30806 30889 . + 0 ID=Physo138483;Parent=Physo138483;rank=6 scaffold_64 . CDS 30936 31034 . + 0 ID=Physo138483;Parent=Physo138483;rank=7 scaffold_64 . CDS 31117 31521 . + 0 ID=Physo138483;Parent=Physo138483;rank=8 scaffold_64 ensembl protein_coding_gene 19856 21241 . + . ID=Physo157837;biotype=protein_coding;external_name=C_scaffold_64000002;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 19856 21241 . + . ID=Physo157837;Parent=Physo157837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 19856 20458 . + 0 ID=Physo157837;Parent=Physo157837;rank=1 scaffold_64 . exon 19856 20458 . + . ID=Physo157837.1;Parent=Physo157837;constitutive=1;rank=1 scaffold_64 . CDS 20603 20983 . + 0 ID=Physo157837;Parent=Physo157837;rank=2 scaffold_64 . exon 20603 20983 . + . ID=Physo157837.2;Parent=Physo157837;constitutive=1;rank=2 scaffold_64 . CDS 21020 21241 . + 0 ID=Physo157837;Parent=Physo157837;rank=3 scaffold_64 . exon 21020 21241 . + . ID=Physo157837.3;Parent=Physo157837;constitutive=1;rank=3 scaffold_64 . repeat_region 33763 33783 . ? . description=trf scaffold_64 . repeat_region 37973 38019 . ? . description=trf scaffold_64 . exon 29676 29920 . + . ID=Physo138483.2;Parent=Physo138483;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_64 . exon 29987 30363 . + . ID=Physo138483.3;Parent=Physo138483;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_64 . exon 30496 30570 . + . ID=Physo138483.4;Parent=Physo138483;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_64 . exon 30643 30731 . + . ID=Physo138483.5;Parent=Physo138483;constitutive=1;ensembl_phase=1;rank=5 scaffold_64 . exon 30806 30889 . + . ID=Physo138483.6;Parent=Physo138483;constitutive=1;rank=6 scaffold_64 . exon 30936 31034 . + . ID=Physo138483.7;Parent=Physo138483;constitutive=1;rank=7 scaffold_64 . exon 31117 31521 . + . ID=Physo138483.8;Parent=Physo138483;constitutive=1;rank=8 scaffold_64 ensembl protein_coding_gene 31591 33854 . + . ID=Physo138484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640012;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 31591 33854 . + . ID=Physo138484;Parent=Physo138484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 31591 31730 . + 0 ID=Physo138484;Parent=Physo138484;rank=1 scaffold_64 . exon 31591 31730 . + . ID=Physo138484.1;Parent=Physo138484;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 32086 33727 . + 0 ID=Physo138484;Parent=Physo138484;rank=2 scaffold_64 . exon 32086 33727 . + . ID=Physo138484.2;Parent=Physo138484;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 33798 33854 . + 0 ID=Physo138484;Parent=Physo138484;rank=3 scaffold_64 . exon 33798 33854 . + . ID=Physo138484.3;Parent=Physo138484;constitutive=1;rank=3 scaffold_64 ensembl protein_coding_gene 34158 37864 . + . ID=Physo138485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640013;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 34158 37864 . + . ID=Physo138485;Parent=Physo138485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 34158 35806 . + 0 ID=Physo138485;Parent=Physo138485;rank=1 scaffold_64 . exon 34158 35806 . + . ID=Physo138485.1;Parent=Physo138485;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 35848 35984 . + 0 ID=Physo138485;Parent=Physo138485;rank=2 scaffold_64 . exon 35848 35984 . + . ID=Physo138485.2;Parent=Physo138485;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 36059 36468 . + 0 ID=Physo138485;Parent=Physo138485;rank=3 scaffold_64 . exon 36059 36468 . + . ID=Physo138485.3;Parent=Physo138485;constitutive=1;ensembl_phase=1;rank=3 scaffold_64 . CDS 36536 37864 . + 0 ID=Physo138485;Parent=Physo138485;rank=4 scaffold_64 . exon 36536 37864 . + . ID=Physo138485.4;Parent=Physo138485;constitutive=1;rank=4 scaffold_64 ensembl protein_coding_gene 38575 39228 . + . ID=Physo138486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640014;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 38575 39228 . + . ID=Physo138486;Parent=Physo138486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 38575 39228 . + 0 ID=Physo138486;Parent=Physo138486;rank=1 scaffold_64 . exon 38575 39228 . + . ID=Physo138486.1;Parent=Physo138486;constitutive=1;rank=1 scaffold_64 . repeat_region 39564 39572 . ? . description=dust scaffold_64 . repeat_region 39647 39654 . ? . description=dust scaffold_64 . biological_region 41655 41658 0.999 - . logic_name=eponine scaffold_64 . biological_region 41769 41773 0.999 + . logic_name=eponine scaffold_64 . biological_region 44030 44031 0.999 + . logic_name=eponine scaffold_64 . repeat_region 47296 47352 . ? . description=dust scaffold_64 . repeat_region 47639 47648 . ? . description=dust scaffold_64 . repeat_region 48090 48152 . ? . description=dust scaffold_64 . biological_region 48566 48567 0.999 - . logic_name=eponine scaffold_64 ensembl protein_coding_gene 46071 47166 . - . ID=Physo138487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640015;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 46071 47166 . - . ID=Physo138487;Parent=Physo138487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 46071 46660 . - 0 ID=Physo138487;Parent=Physo138487;rank=2 scaffold_64 . exon 46071 46660 . - . ID=Physo138487.2;Parent=Physo138487;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 47151 47166 . - 0 ID=Physo138487;Parent=Physo138487;rank=1 scaffold_64 . exon 47151 47166 . - . ID=Physo138487.1;Parent=Physo138487;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . repeat_region 50115 50155 . ? . description=trf scaffold_64 . repeat_region 52553 52576 . ? . description=trf scaffold_64 . repeat_region 58674 58702 . ? . description=trf scaffold_64 ensembl protein_coding_gene 55171 55830 . - . ID=Physo138488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640016;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 55171 55830 . - . ID=Physo138488;Parent=Physo138488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 55171 55179 . - 0 ID=Physo138488;Parent=Physo138488;rank=3 scaffold_64 . exon 55171 55179 . - . ID=Physo138488.3;Parent=Physo138488;constitutive=1;rank=3 scaffold_64 . CDS 55215 55667 . - 0 ID=Physo138488;Parent=Physo138488;rank=2 scaffold_64 . exon 55215 55667 . - . ID=Physo138488.2;Parent=Physo138488;constitutive=1;rank=2 scaffold_64 . CDS 55732 55830 . - 0 ID=Physo138488;Parent=Physo138488;rank=1 scaffold_64 . exon 55732 55830 . - . ID=Physo138488.1;Parent=Physo138488;constitutive=1;rank=1 scaffold_64 . repeat_region 62399 62439 . ? . description=dust scaffold_64 . repeat_region 62849 62921 . ? . description=dust scaffold_64 . biological_region 63642 63642 0.999 + . logic_name=eponine scaffold_64 . biological_region 63656 63661 0.999 - . logic_name=eponine scaffold_64 . biological_region 63712 63718 0.999 + . logic_name=eponine scaffold_64 . repeat_region 63845 63852 . ? . description=dust scaffold_64 . biological_region 65206 65209 0.999 + . logic_name=eponine scaffold_64 . biological_region 66239 66241 0.999 - . logic_name=eponine scaffold_64 . biological_region 67610 67614 0.999 + . logic_name=eponine scaffold_64 . biological_region 68414 68420 0.999 + . logic_name=eponine scaffold_64 . biological_region 68502 68504 0.999 + . logic_name=eponine scaffold_64 . biological_region 68524 68528 0.999 - . logic_name=eponine scaffold_64 . biological_region 68756 68758 0.999 + . logic_name=eponine scaffold_64 . repeat_region 70244 70273 . ? . description=trf scaffold_64 . repeat_region 70311 70473 . ? . description=trf scaffold_64 . repeat_region 70341 70473 . ? . description=trf scaffold_64 . repeat_region 70866 70912 . ? . description=trf scaffold_64 . repeat_region 71647 71693 . ? . description=trf scaffold_64 . repeat_region 72173 72218 . ? . description=trf scaffold_64 . repeat_region 75439 76576 . - . description=GypsyPi-1c_I-int scaffold_64 ensembl protein_coding_gene 69887 70492 . - . ID=Physo138489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640017;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 69887 70492 . - . ID=Physo138489;Parent=Physo138489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 69887 70492 . - 0 ID=Physo138489;Parent=Physo138489;rank=1 scaffold_64 . exon 69887 70492 . - . ID=Physo138489.1;Parent=Physo138489;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 72027 72440 . - . ID=Physo138490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640018;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 72027 72440 . - . ID=Physo138490;Parent=Physo138490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 72027 72440 . - 0 ID=Physo138490;Parent=Physo138490;rank=1 scaffold_64 . exon 72027 72440 . - . ID=Physo138490.1;Parent=Physo138490;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 75461 77005 . - . ID=Physo138491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640019;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 75461 77005 . - . ID=Physo138491;Parent=Physo138491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 75461 75474 . - 0 ID=Physo138491;Parent=Physo138491;rank=4 scaffold_64 . exon 75461 75474 . - . ID=Physo138491.4;Parent=Physo138491;constitutive=1;ensembl_phase=1;rank=4 scaffold_64 . CDS 75537 75777 . - 0 ID=Physo138491;Parent=Physo138491;rank=3 scaffold_64 . exon 75537 75777 . - . ID=Physo138491.3;Parent=Physo138491;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_64 . CDS 75820 76620 . - 0 ID=Physo138491;Parent=Physo138491;rank=2 scaffold_64 . exon 75820 76620 . - . ID=Physo138491.2;Parent=Physo138491;constitutive=1;rank=2 scaffold_64 . CDS 76973 77005 . - 0 ID=Physo138491;Parent=Physo138491;rank=1 scaffold_64 . exon 76973 77005 . - . ID=Physo138491.1;Parent=Physo138491;constitutive=1;rank=1 scaffold_64 . biological_region 79567 79570 0.999 - . logic_name=eponine scaffold_64 . biological_region 80221 80223 0.999 - . logic_name=eponine scaffold_64 . biological_region 80363 80369 0.999 + . logic_name=eponine scaffold_64 . biological_region 82145 82148 0.999 - . logic_name=eponine scaffold_64 . biological_region 83836 83836 0.999 - . logic_name=eponine scaffold_64 . biological_region 84503 84507 0.999 - . logic_name=eponine scaffold_64 . biological_region 85042 85048 0.999 + . logic_name=eponine scaffold_64 . biological_region 85160 85165 0.999 - . logic_name=eponine scaffold_64 . repeat_region 85528 85537 . ? . description=dust scaffold_64 . repeat_region 87761 87879 . ? . description=dust scaffold_64 ensembl protein_coding_gene 78879 79616 . - . ID=Physo138492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640020;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 78879 79616 . - . ID=Physo138492;Parent=Physo138492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 78879 78894 . - 0 ID=Physo138492;Parent=Physo138492;rank=3 scaffold_64 . exon 78879 78894 . - . ID=Physo138492.3;Parent=Physo138492;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 79025 79373 . - 0 ID=Physo138492;Parent=Physo138492;rank=2 scaffold_64 . exon 79025 79373 . - . ID=Physo138492.2;Parent=Physo138492;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_64 . CDS 79406 79616 . - 0 ID=Physo138492;Parent=Physo138492;rank=1 scaffold_64 . exon 79406 79616 . - . ID=Physo138492.1;Parent=Physo138492;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 ensembl protein_coding_gene 80294 83491 . + . ID=Physo138493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640021;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 80294 83491 . + . ID=Physo138493;Parent=Physo138493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 80294 80833 . + 0 ID=Physo138493;Parent=Physo138493;rank=1 scaffold_64 . exon 80294 80833 . + . ID=Physo138493.1;Parent=Physo138493;constitutive=1;rank=1 scaffold_64 . CDS 80915 81694 . + 0 ID=Physo138493;Parent=Physo138493;rank=2 scaffold_64 . exon 80915 81694 . + . ID=Physo138493.2;Parent=Physo138493;constitutive=1;rank=2 scaffold_64 . CDS 81734 83491 . + 0 ID=Physo138493;Parent=Physo138493;rank=3 scaffold_64 . exon 81734 83491 . + . ID=Physo138493.3;Parent=Physo138493;constitutive=1;rank=3 scaffold_64 ensembl protein_coding_gene 85043 85429 . - . ID=Physo138494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640022;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 85043 85429 . - . ID=Physo138494;Parent=Physo138494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 85043 85429 . - 0 ID=Physo138494;Parent=Physo138494;rank=1 scaffold_64 . exon 85043 85429 . - . ID=Physo138494.1;Parent=Physo138494;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 86064 87028 . + . ID=Physo138495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640023;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 86064 87028 . + . ID=Physo138495;Parent=Physo138495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 86064 86458 . + 0 ID=Physo138495;Parent=Physo138495;rank=1 scaffold_64 . exon 86064 86458 . + . ID=Physo138495.1;Parent=Physo138495;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 86602 87028 . + 0 ID=Physo138495;Parent=Physo138495;rank=2 scaffold_64 . exon 86602 87028 . + . ID=Physo138495.2;Parent=Physo138495;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . repeat_region 92597 92680 . ? . description=trf scaffold_64 . repeat_region 92606 92680 . ? . description=trf scaffold_64 . repeat_region 93086 93113 . ? . description=trf scaffold_64 . repeat_region 93788 93834 . ? . description=trf scaffold_64 ensembl protein_coding_gene 92087 92545 . - . ID=Physo119516;biotype=protein_coding;external_name=estExt_Genewise1.C_640020;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 92087 92545 . - . ID=Physo119516;Parent=Physo119516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 92087 92149 . - 0 ID=Physo119516;Parent=Physo119516;rank=1 scaffold_64 . exon 92087 92545 . - . ID=Physo119516.1;Parent=Physo119516;constitutive=1;ensembl_phase=-1;rank=1 scaffold_64 ensembl protein_coding_gene 89762 91100 . + . ID=Physo138496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640024;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 89762 91100 . + . ID=Physo138496;Parent=Physo138496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 89762 90209 . + 0 ID=Physo138496;Parent=Physo138496;rank=1 scaffold_64 . exon 89762 90209 . + . ID=Physo138496.1;Parent=Physo138496;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . CDS 90293 90327 . + 0 ID=Physo138496;Parent=Physo138496;rank=2 scaffold_64 . exon 90293 90327 . + . ID=Physo138496.2;Parent=Physo138496;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 90352 90673 . + 0 ID=Physo138496;Parent=Physo138496;rank=3 scaffold_64 . exon 90352 90673 . + . ID=Physo138496.3;Parent=Physo138496;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_64 . CDS 90769 91100 . + 0 ID=Physo138496;Parent=Physo138496;rank=4 scaffold_64 . exon 90769 91100 . + . ID=Physo138496.4;Parent=Physo138496;constitutive=1;ensembl_phase=1;rank=4 scaffold_64 ensembl protein_coding_gene 92745 93121 . - . ID=Physo138497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640025;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 92745 93121 . - . ID=Physo138497;Parent=Physo138497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 92745 92791 . - 0 ID=Physo138497;Parent=Physo138497;rank=2 scaffold_64 . exon 92745 92791 . - . ID=Physo138497.2;Parent=Physo138497;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 92851 93121 . - 0 ID=Physo138497;Parent=Physo138497;rank=1 scaffold_64 . exon 92851 93121 . - . ID=Physo138497.1;Parent=Physo138497;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 ensembl protein_coding_gene 96885 98582 . - . ID=Physo138498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640026;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 96885 98582 . - . ID=Physo138498;Parent=Physo138498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 96885 96903 . - 0 ID=Physo138498;Parent=Physo138498;rank=6 scaffold_64 . exon 96885 96903 . - . ID=Physo138498.6;Parent=Physo138498;constitutive=1;ensembl_phase=2;rank=6 scaffold_64 . CDS 96932 97241 . - 0 ID=Physo138498;Parent=Physo138498;rank=5 scaffold_64 . exon 96932 97241 . - . ID=Physo138498.5;Parent=Physo138498;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_64 . CDS 97431 97447 . - 0 ID=Physo138498;Parent=Physo138498;rank=4 scaffold_64 . exon 97431 97447 . - . ID=Physo138498.4;Parent=Physo138498;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_64 . CDS 97473 97494 . - 0 ID=Physo138498;Parent=Physo138498;rank=3 scaffold_64 . exon 97473 97494 . - . ID=Physo138498.3;Parent=Physo138498;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_64 . CDS 97628 97721 . - 0 ID=Physo138498;Parent=Physo138498;rank=2 scaffold_64 . exon 97628 97721 . - . ID=Physo138498.2;Parent=Physo138498;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_64 . CDS 97806 98582 . - 0 ID=Physo138498;Parent=Physo138498;rank=1 scaffold_64 . exon 97806 98582 . - . ID=Physo138498.1;Parent=Physo138498;constitutive=1;rank=1 scaffold_64 . biological_region 99503 99511 0.999 + . logic_name=eponine scaffold_64 . biological_region 99659 99660 0.999 + . logic_name=eponine scaffold_64 . biological_region 99782 99785 0.999 - . logic_name=eponine scaffold_64 . biological_region 99839 99839 0.999 + . logic_name=eponine scaffold_64 . biological_region 99941 99944 0.999 + . logic_name=eponine scaffold_64 . biological_region 99964 99965 0.999 - . logic_name=eponine scaffold_64 . biological_region 100133 100136 0.999 + . logic_name=eponine scaffold_64 . biological_region 100177 100182 0.999 + . logic_name=eponine scaffold_64 . biological_region 100218 100223 0.999 - . logic_name=eponine scaffold_64 . biological_region 100243 100245 0.999 + . logic_name=eponine scaffold_64 . biological_region 100270 100277 0.999 + . logic_name=eponine scaffold_64 . biological_region 100276 100280 0.999 - . logic_name=eponine scaffold_64 . biological_region 100305 100305 0.999 + . logic_name=eponine scaffold_64 . biological_region 100334 100343 0.999 - . logic_name=eponine scaffold_64 . biological_region 102863 102863 0.999 + . logic_name=eponine scaffold_64 . biological_region 102930 102930 0.999 + . logic_name=eponine scaffold_64 . biological_region 103087 103093 0.999 - . logic_name=eponine scaffold_64 . biological_region 105898 105901 0.999 + . logic_name=eponine scaffold_64 . biological_region 108003 108008 0.999 - . logic_name=eponine scaffold_64 ensembl protein_coding_gene 99698 101611 . + . ID=Physo138499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640027;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 99698 101611 . + . ID=Physo138499;Parent=Physo138499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 99698 101476 . + 0 ID=Physo138499;Parent=Physo138499;rank=1 scaffold_64 . exon 99698 101611 . + . ID=Physo138499.1;Parent=Physo138499;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_64 ensembl protein_coding_gene 103959 105482 . + . ID=Physo138502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640030;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 103959 105482 . + . ID=Physo138502;Parent=Physo138502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 103959 104841 . + 0 ID=Physo138502;Parent=Physo138502;rank=1 scaffold_64 . exon 103959 104841 . + . ID=Physo138502.1;Parent=Physo138502;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . CDS 104923 105005 . + 0 ID=Physo138502;Parent=Physo138502;rank=2 scaffold_64 . exon 104923 105005 . + . ID=Physo138502.2;Parent=Physo138502;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 105071 105131 . + 0 ID=Physo138502;Parent=Physo138502;rank=3 scaffold_64 . exon 105071 105131 . + . ID=Physo138502.3;Parent=Physo138502;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_64 . CDS 105200 105312 . + 0 ID=Physo138502;Parent=Physo138502;rank=4 scaffold_64 . exon 105200 105312 . + . ID=Physo138502.4;Parent=Physo138502;constitutive=1;ensembl_phase=1;rank=4 scaffold_64 . CDS 105393 105482 . + 0 ID=Physo138502;Parent=Physo138502;rank=5 scaffold_64 . exon 105393 105482 . + . ID=Physo138502.5;Parent=Physo138502;constitutive=1;rank=5 scaffold_64 ensembl protein_coding_gene 107011 109002 . - . ID=Physo138504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640032;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 107011 109002 . - . ID=Physo138504;Parent=Physo138504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 107011 109002 . - 0 ID=Physo138504;Parent=Physo138504;rank=1 scaffold_64 . exon 107011 109002 . - . ID=Physo138504.1;Parent=Physo138504;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 101646 102621 . - . ID=Physo157841;biotype=protein_coding;external_name=C_scaffold_64000006;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 101646 102621 . - . ID=Physo157841;Parent=Physo157841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 101646 102162 . - 0 ID=Physo157841;Parent=Physo157841;rank=3 scaffold_64 . exon 101646 102162 . - . ID=Physo157841.3;Parent=Physo157841;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 102249 102467 . - 0 ID=Physo157841;Parent=Physo157841;rank=2 scaffold_64 . exon 102249 102467 . - . ID=Physo157841.2;Parent=Physo157841;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_64 . CDS 102536 102621 . - 0 ID=Physo157841;Parent=Physo157841;rank=1 scaffold_64 . exon 102536 102621 . - . ID=Physo157841.1;Parent=Physo157841;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 102795 103700 . - . ID=Physo157842;biotype=protein_coding;external_name=C_scaffold_64000007;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 102795 103700 . - . ID=Physo157842;Parent=Physo157842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 102795 103164 . - 0 ID=Physo157842;Parent=Physo157842;rank=3 scaffold_64 . exon 102795 103164 . - . ID=Physo157842.3;Parent=Physo157842;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 103236 103527 . - 0 ID=Physo157842;Parent=Physo157842;rank=2 scaffold_64 . exon 103236 103527 . - . ID=Physo157842.2;Parent=Physo157842;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_64 . CDS 103619 103700 . - 0 ID=Physo157842;Parent=Physo157842;rank=1 scaffold_64 . exon 103619 103700 . - . ID=Physo157842.1;Parent=Physo157842;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 ensembl protein_coding_gene 105655 106326 . + . ID=Physo157844;biotype=protein_coding;external_name=C_scaffold_64000009;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 105655 106326 . + . ID=Physo157844;Parent=Physo157844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 105655 106326 . + 0 ID=Physo157844;Parent=Physo157844;rank=1 scaffold_64 . exon 105655 106326 . + . ID=Physo157844.1;Parent=Physo157844;constitutive=1;rank=1 scaffold_64 . repeat_region 110055 110074 . ? . description=dust scaffold_64 ensembl protein_coding_gene 109316 110047 . - . ID=Physo138505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640033;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 109316 110047 . - . ID=Physo138505;Parent=Physo138505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 109316 110047 . - 0 ID=Physo138505;Parent=Physo138505;rank=1 scaffold_64 . exon 109316 110047 . - . ID=Physo138505.1;Parent=Physo138505;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 110375 112381 . + . ID=Physo138506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640034;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 110375 112381 . + . ID=Physo138506;Parent=Physo138506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 110375 112381 . + 0 ID=Physo138506;Parent=Physo138506;rank=1 scaffold_64 . exon 110375 112381 . + . ID=Physo138506.1;Parent=Physo138506;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 112710 114347 . - . ID=Physo138507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640035;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 112710 114347 . - . ID=Physo138507;Parent=Physo138507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 112710 114347 . - 0 ID=Physo138507;Parent=Physo138507;rank=1 scaffold_64 . exon 112710 114347 . - . ID=Physo138507.1;Parent=Physo138507;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 114584 115350 . + . ID=Physo138508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640036;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 114584 115350 . + . ID=Physo138508;Parent=Physo138508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 114584 114820 . + 0 ID=Physo138508;Parent=Physo138508;rank=1 scaffold_64 . exon 114584 114820 . + . ID=Physo138508.1;Parent=Physo138508;constitutive=1;rank=1 scaffold_64 . CDS 114955 115350 . + 0 ID=Physo138508;Parent=Physo138508;rank=2 scaffold_64 . exon 114955 115350 . + . ID=Physo138508.2;Parent=Physo138508;constitutive=1;rank=2 scaffold_64 ensembl protein_coding_gene 116033 118033 . + . ID=Physo138509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640037;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 116033 118033 . + . ID=Physo138509;Parent=Physo138509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 116033 118033 . + 0 ID=Physo138509;Parent=Physo138509;rank=1 scaffold_64 . exon 116033 118033 . + . ID=Physo138509.1;Parent=Physo138509;constitutive=1;rank=1 scaffold_64 . biological_region 122755 122757 0.999 - . logic_name=eponine scaffold_64 . biological_region 122841 122846 0.999 + . logic_name=eponine scaffold_64 . biological_region 122921 122928 0.999 + . logic_name=eponine scaffold_64 . biological_region 122939 122942 0.999 + . logic_name=eponine scaffold_64 . biological_region 123030 123034 0.999 - . logic_name=eponine scaffold_64 . biological_region 123042 123047 0.999 + . logic_name=eponine scaffold_64 . biological_region 123087 123095 0.999 - . logic_name=eponine scaffold_64 . repeat_region 123109 123177 . ? . description=trf scaffold_64 . biological_region 123172 123173 0.999 - . logic_name=eponine scaffold_64 . biological_region 123214 123220 0.999 - . logic_name=eponine scaffold_64 . biological_region 123446 123451 0.999 + . logic_name=eponine scaffold_64 . biological_region 123565 123571 0.999 - . logic_name=eponine scaffold_64 . biological_region 124580 124582 0.999 + . logic_name=eponine scaffold_64 . biological_region 124678 124682 0.999 + . logic_name=eponine scaffold_64 . biological_region 124721 124726 0.999 - . logic_name=eponine scaffold_64 . biological_region 127564 127566 0.999 - . logic_name=eponine scaffold_64 ensembl protein_coding_gene 118527 119870 . + . ID=Physo109146;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_640002;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 118527 119870 . + . ID=Physo109146;Parent=Physo109146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 118527 118757 . + 0 ID=Physo109146;Parent=Physo109146;rank=1 scaffold_64 . exon 118527 118757 . + . ID=Physo109146.1;Parent=Physo109146;constitutive=1;rank=1 scaffold_64 . CDS 118857 119870 . + 0 ID=Physo109146;Parent=Physo109146;rank=2 scaffold_64 . exon 118857 119870 . + . ID=Physo109146.2;Parent=Physo109146;constitutive=1;rank=2 scaffold_64 ensembl protein_coding_gene 123397 124797 . - . ID=Physo109147;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_640003;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 123397 124797 . - . ID=Physo109147;Parent=Physo109147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 123397 123633 . - 0 ID=Physo109147;Parent=Physo109147;rank=6 scaffold_64 . exon 123397 123633 . - . ID=Physo109147.6;Parent=Physo109147;constitutive=1;rank=6 scaffold_64 . CDS 123712 123785 . - 0 ID=Physo109147;Parent=Physo109147;rank=5 scaffold_64 . exon 123712 123785 . - . ID=Physo109147.5;Parent=Physo109147;constitutive=1;ensembl_phase=1;rank=5 scaffold_64 . CDS 123857 123917 . - 0 ID=Physo109147;Parent=Physo109147;rank=4 scaffold_64 . exon 123857 123917 . - . ID=Physo109147.4;Parent=Physo109147;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_64 . CDS 123999 124235 . - 0 ID=Physo109147;Parent=Physo109147;rank=3 scaffold_64 . exon 123999 124235 . - . ID=Physo109147.3;Parent=Physo109147;constitutive=1;rank=3 scaffold_64 . CDS 124315 124614 . - 0 ID=Physo109147;Parent=Physo109147;rank=2 scaffold_64 . exon 124315 124614 . - . ID=Physo109147.2;Parent=Physo109147;constitutive=1;rank=2 scaffold_64 . CDS 124666 124797 . - 0 ID=Physo109147;Parent=Physo109147;rank=1 scaffold_64 . exon 124666 124797 . - . ID=Physo109147.1;Parent=Physo109147;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 121754 123217 . - . ID=Physo138511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640039;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 121754 123217 . - . ID=Physo138511;Parent=Physo138511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 121754 122060 . - . ID=Physo138511.6;Parent=Physo138511;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_64 . CDS 122058 122060 . - 0 ID=Physo138511;Parent=Physo138511;rank=6 scaffold_64 . CDS 122144 122174 . - 0 ID=Physo138511;Parent=Physo138511;rank=5 scaffold_64 . exon 122144 122174 . - . ID=Physo138511.5;Parent=Physo138511;constitutive=1;ensembl_phase=2;rank=5 scaffold_64 . CDS 122255 122290 . - 0 ID=Physo138511;Parent=Physo138511;rank=4 scaffold_64 . exon 122255 122290 . - . ID=Physo138511.4;Parent=Physo138511;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_64 . CDS 122369 122467 . - 0 ID=Physo138511;Parent=Physo138511;rank=3 scaffold_64 . exon 122369 122467 . - . ID=Physo138511.3;Parent=Physo138511;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_64 . CDS 122547 122597 . - 0 ID=Physo138511;Parent=Physo138511;rank=2 scaffold_64 . exon 122547 122597 . - . ID=Physo138511.2;Parent=Physo138511;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_64 . CDS 122663 123198 . - 0 ID=Physo138511;Parent=Physo138511;rank=1 scaffold_64 . exon 122663 123217 . - . ID=Physo138511.1;Parent=Physo138511;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_64 ensembl protein_coding_gene 124928 126848 . + . ID=Physo138513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640041;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 124928 126848 . + . ID=Physo138513;Parent=Physo138513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 124928 124939 . + 0 ID=Physo138513;Parent=Physo138513;rank=1 scaffold_64 . exon 124928 124939 . + . ID=Physo138513.1;Parent=Physo138513;constitutive=1;rank=1 scaffold_64 . CDS 124974 125144 . + 0 ID=Physo138513;Parent=Physo138513;rank=2 scaffold_64 . exon 124974 125144 . + . ID=Physo138513.2;Parent=Physo138513;constitutive=1;rank=2 scaffold_64 . CDS 125217 125309 . + 0 ID=Physo138513;Parent=Physo138513;rank=3 scaffold_64 . exon 125217 125309 . + . ID=Physo138513.3;Parent=Physo138513;constitutive=1;rank=3 scaffold_64 . CDS 125390 125479 . + 0 ID=Physo138513;Parent=Physo138513;rank=4 scaffold_64 . exon 125390 125479 . + . ID=Physo138513.4;Parent=Physo138513;constitutive=1;rank=4 scaffold_64 . CDS 125563 125679 . + 0 ID=Physo138513;Parent=Physo138513;rank=5 scaffold_64 . exon 125563 125679 . + . ID=Physo138513.5;Parent=Physo138513;constitutive=1;rank=5 scaffold_64 . CDS 125741 126079 . + 0 ID=Physo138513;Parent=Physo138513;rank=6 scaffold_64 . exon 125741 126079 . + . ID=Physo138513.6;Parent=Physo138513;constitutive=1;rank=6 scaffold_64 . CDS 126155 126223 . + 0 ID=Physo138513;Parent=Physo138513;rank=7 scaffold_64 . exon 126155 126223 . + . ID=Physo138513.7;Parent=Physo138513;constitutive=1;rank=7 scaffold_64 . CDS 126300 126342 . + 0 ID=Physo138513;Parent=Physo138513;rank=8 scaffold_64 . exon 126300 126342 . + . ID=Physo138513.8;Parent=Physo138513;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_64 . CDS 126468 126592 . + 0 ID=Physo138513;Parent=Physo138513;rank=9 scaffold_64 . exon 126468 126592 . + . ID=Physo138513.9;Parent=Physo138513;constitutive=1;ensembl_phase=1;rank=9 scaffold_64 . CDS 126672 126848 . + 0 ID=Physo138513;Parent=Physo138513;rank=10 scaffold_64 . exon 126672 126848 . + . ID=Physo138513.10;Parent=Physo138513;constitutive=1;rank=10 scaffold_64 ensembl protein_coding_gene 126896 128152 . - . ID=Physo138514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640042;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 126896 128152 . - . ID=Physo138514;Parent=Physo138514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 126896 128152 . - 0 ID=Physo138514;Parent=Physo138514;rank=1 scaffold_64 . exon 126896 128152 . - . ID=Physo138514.1;Parent=Physo138514;constitutive=1;rank=1 scaffold_64 . repeat_region 128691 128730 . ? . description=dust scaffold_64 ensembl protein_coding_gene 129029 130636 . + . ID=Physo119530;biotype=protein_coding;external_name=estExt_Genewise1.C_640034;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 129029 130636 . + . ID=Physo119530;Parent=Physo119530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 129029 130636 . + . ID=Physo119530.1;Parent=Physo119530;constitutive=1;ensembl_phase=-1;rank=1 scaffold_64 . CDS 129155 130636 . + 0 ID=Physo119530;Parent=Physo119530;rank=1 scaffold_64 ensembl protein_coding_gene 132404 132643 . + . ID=Physo119531;biotype=protein_coding;external_name=estExt_Genewise1.C_640035;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 132404 132643 . + . ID=Physo119531;Parent=Physo119531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 132404 132643 . + 0 ID=Physo119531;Parent=Physo119531;rank=1 scaffold_64 . exon 132404 132643 . + . ID=Physo119531.1;Parent=Physo119531;constitutive=1;rank=1 scaffold_64 . biological_region 139341 139350 0.999 + . logic_name=eponine scaffold_64 . biological_region 139569 139577 0.999 + . logic_name=eponine scaffold_64 . biological_region 139587 139592 0.999 + . logic_name=eponine scaffold_64 . biological_region 139597 139600 0.999 - . logic_name=eponine scaffold_64 . biological_region 139618 139624 0.999 + . logic_name=eponine scaffold_64 . biological_region 139652 139654 0.999 + . logic_name=eponine scaffold_64 . biological_region 139707 139712 0.999 - . logic_name=eponine scaffold_64 . biological_region 139736 139743 0.999 - . logic_name=eponine scaffold_64 . biological_region 139793 139796 0.999 + . logic_name=eponine scaffold_64 . biological_region 139902 139903 0.999 + . logic_name=eponine scaffold_64 . biological_region 139940 139944 0.999 + . logic_name=eponine scaffold_64 . biological_region 140002 140004 0.999 - . logic_name=eponine scaffold_64 . biological_region 140012 140015 0.999 + . logic_name=eponine scaffold_64 . biological_region 142567 142567 0.999 - . logic_name=eponine scaffold_64 . repeat_region 145405 145522 . ? . description=trf scaffold_64 . repeat_region 145412 145522 . ? . description=trf scaffold_64 ensembl protein_coding_gene 138444 140091 . - . ID=Physo138516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640044;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 138444 140091 . - . ID=Physo138516;Parent=Physo138516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 138444 138795 . - . ID=Physo138516.3;Parent=Physo138516;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_64 . CDS 138536 138795 . - 0 ID=Physo138516;Parent=Physo138516;rank=3 scaffold_64 . CDS 138862 139014 . - 0 ID=Physo138516;Parent=Physo138516;rank=2 scaffold_64 . exon 138862 139014 . - . ID=Physo138516.2;Parent=Physo138516;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 139096 140089 . - 0 ID=Physo138516;Parent=Physo138516;rank=1 scaffold_64 . exon 139096 140091 . - . ID=Physo138516.1;Parent=Physo138516;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_64 ensembl protein_coding_gene 145994 146741 . + . ID=Physo138517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640045;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 145994 146741 . + . ID=Physo138517;Parent=Physo138517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 145994 146078 . + 0 ID=Physo138517;Parent=Physo138517;rank=1 scaffold_64 . exon 145994 146078 . + . ID=Physo138517.1;Parent=Physo138517;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . CDS 146130 146137 . + 0 ID=Physo138517;Parent=Physo138517;rank=2 scaffold_64 . exon 146130 146137 . + . ID=Physo138517.2;Parent=Physo138517;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 146234 146353 . + 0 ID=Physo138517;Parent=Physo138517;rank=3 scaffold_64 . exon 146234 146353 . + . ID=Physo138517.3;Parent=Physo138517;constitutive=1;rank=3 scaffold_64 . CDS 146465 146666 . + 0 ID=Physo138517;Parent=Physo138517;rank=4 scaffold_64 . exon 146465 146666 . + . ID=Physo138517.4;Parent=Physo138517;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_64 . CDS 146728 146741 . + 0 ID=Physo138517;Parent=Physo138517;rank=5 scaffold_64 . exon 146728 146741 . + . ID=Physo138517.5;Parent=Physo138517;constitutive=1;ensembl_phase=1;rank=5 scaffold_64 ensembl protein_coding_gene 149033 149656 . - . ID=Physo109148;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_640004;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 149033 149656 . - . ID=Physo109148;Parent=Physo109148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 149033 149656 . - 0 ID=Physo109148;Parent=Physo109148;rank=1 scaffold_64 . exon 149033 149656 . - . ID=Physo109148.1;Parent=Physo109148;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 148518 148883 . - . ID=Physo138518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640046;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 148518 148883 . - . ID=Physo138518;Parent=Physo138518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 148518 148883 . - 0 ID=Physo138518;Parent=Physo138518;rank=1 scaffold_64 . exon 148518 148883 . - . ID=Physo138518.1;Parent=Physo138518;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 149891 152619 . - . ID=Physo138520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640048;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 149891 152619 . - . ID=Physo138520;Parent=Physo138520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 149891 150060 . - 0 ID=Physo138520;Parent=Physo138520;rank=3 scaffold_64 . exon 149891 150060 . - . ID=Physo138520.3;Parent=Physo138520;constitutive=1;ensembl_phase=1;rank=3 scaffold_64 . CDS 150111 150782 . - 0 ID=Physo138520;Parent=Physo138520;rank=2 scaffold_64 . exon 150111 150782 . - . ID=Physo138520.2;Parent=Physo138520;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 150807 152619 . - 0 ID=Physo138520;Parent=Physo138520;rank=1 scaffold_64 . exon 150807 152619 . - . ID=Physo138520.1;Parent=Physo138520;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . biological_region 158724 158726 0.999 - . logic_name=eponine scaffold_64 . repeat_region 159640 159658 . ? . description=dust scaffold_64 . biological_region 160375 160379 0.999 - . logic_name=eponine scaffold_64 . repeat_region 160815 160845 . ? . description=dust scaffold_64 . repeat_region 160818 160845 . ? . description=trf scaffold_64 . biological_region 163554 163555 0.999 - . logic_name=eponine scaffold_64 . biological_region 165464 165467 0.999 + . logic_name=eponine scaffold_64 . biological_region 165500 165507 0.999 - . logic_name=eponine scaffold_64 . biological_region 166056 166062 0.999 + . logic_name=eponine scaffold_64 . biological_region 166071 166073 0.999 - . logic_name=eponine scaffold_64 . biological_region 166130 166140 0.999 - . logic_name=eponine scaffold_64 . biological_region 166389 166389 0.999 + . logic_name=eponine scaffold_64 . biological_region 166465 166469 0.999 - . logic_name=eponine scaffold_64 . biological_region 166968 166971 0.999 + . logic_name=eponine scaffold_64 . biological_region 166981 166985 0.999 - . logic_name=eponine scaffold_64 . biological_region 166996 166999 0.999 + . logic_name=eponine scaffold_64 . biological_region 167023 167026 0.999 - . logic_name=eponine scaffold_64 ensembl protein_coding_gene 162528 164006 . - . ID=Physo138521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640049;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 162528 164006 . - . ID=Physo138521;Parent=Physo138521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 162528 164006 . - 0 ID=Physo138521;Parent=Physo138521;rank=1 scaffold_64 . exon 162528 164006 . - . ID=Physo138521.1;Parent=Physo138521;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 165239 166488 . - . ID=Physo138522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640050;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 165239 166488 . - . ID=Physo138522;Parent=Physo138522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 165239 165625 . - 0 ID=Physo138522;Parent=Physo138522;rank=2 scaffold_64 . exon 165239 165625 . - . ID=Physo138522.2;Parent=Physo138522;constitutive=1;rank=2 scaffold_64 . CDS 165703 166488 . - 0 ID=Physo138522;Parent=Physo138522;rank=1 scaffold_64 . exon 165703 166488 . - . ID=Physo138522.1;Parent=Physo138522;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 167567 168800 . + . ID=Physo138523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640051;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 167567 168800 . + . ID=Physo138523;Parent=Physo138523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 167567 167702 . + 0 ID=Physo138523;Parent=Physo138523;rank=1 scaffold_64 . exon 167567 167702 . + . ID=Physo138523.1;Parent=Physo138523;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . CDS 167801 167892 . + 0 ID=Physo138523;Parent=Physo138523;rank=2 scaffold_64 . exon 167801 167892 . + . ID=Physo138523.2;Parent=Physo138523;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 167962 168645 . + 0 ID=Physo138523;Parent=Physo138523;rank=3 scaffold_64 . exon 167962 168645 . + . ID=Physo138523.3;Parent=Physo138523;constitutive=1;rank=3 scaffold_64 . CDS 168678 168800 . + 0 ID=Physo138523;Parent=Physo138523;rank=4 scaffold_64 . exon 168678 168800 . + . ID=Physo138523.4;Parent=Physo138523;constitutive=1;rank=4 scaffold_64 ensembl protein_coding_gene 169721 170629 . + . ID=Physo138524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640052;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 169721 170629 . + . ID=Physo138524;Parent=Physo138524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 169721 170578 . + 0 ID=Physo138524;Parent=Physo138524;rank=1 scaffold_64 . exon 169721 170629 . + . ID=Physo138524.1;Parent=Physo138524;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_64 ensembl protein_coding_gene 174252 177617 . - . ID=Physo138525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640053;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 174252 177617 . - . ID=Physo138525;Parent=Physo138525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 174252 174489 . - 0 ID=Physo138525;Parent=Physo138525;rank=7 scaffold_64 . exon 174252 174489 . - . ID=Physo138525.7;Parent=Physo138525;constitutive=1;ensembl_phase=2;rank=7 scaffold_64 . CDS 174654 175211 . - 0 ID=Physo138525;Parent=Physo138525;rank=6 scaffold_64 . exon 174654 175211 . - . ID=Physo138525.6;Parent=Physo138525;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_64 . CDS 175572 175931 . - 0 ID=Physo138525;Parent=Physo138525;rank=5 scaffold_64 . exon 175572 175931 . - . ID=Physo138525.5;Parent=Physo138525;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_64 . CDS 175959 176157 . - 0 ID=Physo138525;Parent=Physo138525;rank=4 scaffold_64 . exon 175959 176157 . - . ID=Physo138525.4;Parent=Physo138525;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_64 . CDS 176254 176507 . - 0 ID=Physo138525;Parent=Physo138525;rank=3 scaffold_64 . exon 176254 176507 . - . ID=Physo138525.3;Parent=Physo138525;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 176868 177227 . - 0 ID=Physo138525;Parent=Physo138525;rank=2 scaffold_64 . exon 176868 177227 . - . ID=Physo138525.2;Parent=Physo138525;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_64 . CDS 177541 177617 . - 0 ID=Physo138525;Parent=Physo138525;rank=1 scaffold_64 . biological_region 177647 177649 0.999 - . logic_name=eponine scaffold_64 . biological_region 177870 177873 0.999 + . logic_name=eponine scaffold_64 . repeat_region 178432 178441 . ? . description=dust scaffold_64 . repeat_region 178492 180214 . ? . description=dust scaffold_64 . biological_region 182696 182703 0.999 + . logic_name=eponine scaffold_64 . biological_region 182719 182723 0.999 + . logic_name=eponine scaffold_64 . biological_region 182793 182797 0.999 - . logic_name=eponine scaffold_64 . biological_region 182852 182854 0.999 + . logic_name=eponine scaffold_64 . repeat_region 183342 183621 . - . description=GypsyPi-1c_I-int scaffold_64 . repeat_region 183728 183922 . ? . description=trf scaffold_64 . repeat_region 184008 185235 . - . description=GypsyPi-1c_I-int scaffold_64 . repeat_region 185231 185884 . - . description=GypsyPi-1c_I-int scaffold_64 . biological_region 186648 186650 0.999 - . logic_name=eponine scaffold_64 . exon 177541 177617 . - . ID=Physo138525.1;Parent=Physo138525;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 183579 187338 . - . ID=Physo138526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640054;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 183579 187338 . - . ID=Physo138526;Parent=Physo138526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 183579 183585 . - 0 ID=Physo138526;Parent=Physo138526;rank=4 scaffold_64 . exon 183579 183585 . - . ID=Physo138526.4;Parent=Physo138526;constitutive=1;ensembl_phase=2;rank=4 scaffold_64 . CDS 183626 183905 . - 0 ID=Physo138526;Parent=Physo138526;rank=3 scaffold_64 . exon 183626 183905 . - . ID=Physo138526.3;Parent=Physo138526;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_64 . CDS 183942 186470 . - 0 ID=Physo138526;Parent=Physo138526;rank=2 scaffold_64 . exon 183942 186470 . - . ID=Physo138526.2;Parent=Physo138526;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 186681 187338 . - 0 ID=Physo138526;Parent=Physo138526;rank=1 scaffold_64 . exon 186681 187338 . - . ID=Physo138526.1;Parent=Physo138526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 ensembl protein_coding_gene 191466 192651 . - . ID=Physo138527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640055;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 191466 192651 . - . ID=Physo138527;Parent=Physo138527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 191466 191503 . - . ID=Physo138527.2;Parent=Physo138527;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_64 . exon 191523 192651 . - . ID=Physo138527.1;Parent=Physo138527;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_64 . CDS 191614 192651 . - 0 ID=Physo138527;Parent=Physo138527;rank=1 scaffold_64 ensembl protein_coding_gene 194131 194481 . + . ID=Physo138528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640056;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 194131 194481 . + . ID=Physo138528;Parent=Physo138528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 194131 194481 . + 0 ID=Physo138528;Parent=Physo138528;rank=1 scaffold_64 . exon 194131 194481 . + . ID=Physo138528.1;Parent=Physo138528;constitutive=1;rank=1 scaffold_64 . repeat_region 199863 199929 . ? . description=dust scaffold_64 . repeat_region 199864 199922 . ? . description=trf scaffold_64 . repeat_region 199915 200043 . ? . description=trf scaffold_64 . repeat_region 199944 200168 . ? . description=trf scaffold_64 . repeat_region 199950 200072 . ? . description=dust scaffold_64 . repeat_region 199951 200168 . ? . description=trf scaffold_64 . repeat_region 199953 200138 . ? . description=trf scaffold_64 . repeat_region 200078 200162 . ? . description=trf scaffold_64 . biological_region 201380 201384 0.999 + . logic_name=eponine scaffold_64 . repeat_region 202576 202589 . ? . description=dust scaffold_64 . biological_region 203697 203697 0.999 - . logic_name=eponine scaffold_64 . biological_region 206473 206474 0.999 + . logic_name=eponine scaffold_64 . biological_region 206605 206606 0.999 + . logic_name=eponine scaffold_64 ensembl protein_coding_gene 206170 206835 . + . ID=Physo109149;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_640005;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 206170 206835 . + . ID=Physo109149;Parent=Physo109149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 206170 206835 . + . ID=Physo109149.1;Parent=Physo109149;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_64 . CDS 206183 206791 . + 0 ID=Physo109149;Parent=Physo109149;rank=1 scaffold_64 ensembl protein_coding_gene 198393 202257 . - . ID=Physo138529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640057;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 198393 202257 . - . ID=Physo138529;Parent=Physo138529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 198393 198400 . - 0 ID=Physo138529;Parent=Physo138529;rank=10 scaffold_64 . exon 198393 198400 . - . ID=Physo138529.10;Parent=Physo138529;constitutive=1;ensembl_phase=1;rank=10 scaffold_64 . CDS 198459 198618 . - 0 ID=Physo138529;Parent=Physo138529;rank=9 scaffold_64 . exon 198459 198618 . - . ID=Physo138529.9;Parent=Physo138529;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_64 . CDS 198685 198898 . - 0 ID=Physo138529;Parent=Physo138529;rank=8 scaffold_64 . exon 198685 198898 . - . ID=Physo138529.8;Parent=Physo138529;constitutive=1;ensembl_phase=2;rank=8 scaffold_64 . CDS 198980 199327 . - 0 ID=Physo138529;Parent=Physo138529;rank=7 scaffold_64 . exon 198980 199327 . - . ID=Physo138529.7;Parent=Physo138529;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_64 . CDS 199544 199820 . - 0 ID=Physo138529;Parent=Physo138529;rank=6 scaffold_64 . exon 199544 199820 . - . ID=Physo138529.6;Parent=Physo138529;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_64 . CDS 199846 200236 . - 0 ID=Physo138529;Parent=Physo138529;rank=5 scaffold_64 . exon 199846 200236 . - . ID=Physo138529.5;Parent=Physo138529;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_64 . CDS 200290 200313 . - 0 ID=Physo138529;Parent=Physo138529;rank=4 scaffold_64 . exon 200290 200313 . - . ID=Physo138529.4;Parent=Physo138529;constitutive=1;rank=4 scaffold_64 . CDS 200370 200411 . - 0 ID=Physo138529;Parent=Physo138529;rank=3 scaffold_64 . exon 200370 200411 . - . ID=Physo138529.3;Parent=Physo138529;constitutive=1;rank=3 scaffold_64 . CDS 201046 202050 . - 0 ID=Physo138529;Parent=Physo138529;rank=2 scaffold_64 . exon 201046 202050 . - . ID=Physo138529.2;Parent=Physo138529;constitutive=1;rank=2 scaffold_64 . CDS 202144 202257 . - 0 ID=Physo138529;Parent=Physo138529;rank=1 scaffold_64 . exon 202144 202257 . - . ID=Physo138529.1;Parent=Physo138529;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 204427 205444 . + . ID=Physo138530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640058;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 204427 205444 . + . ID=Physo138530;Parent=Physo138530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 204427 204683 . + 0 ID=Physo138530;Parent=Physo138530;rank=1 scaffold_64 . exon 204427 204683 . + . ID=Physo138530.1;Parent=Physo138530;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 204775 205039 . + 0 ID=Physo138530;Parent=Physo138530;rank=2 scaffold_64 . exon 204775 205039 . + . ID=Physo138530.2;Parent=Physo138530;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 205142 205444 . + 0 ID=Physo138530;Parent=Physo138530;rank=3 scaffold_64 . exon 205142 205444 . + . ID=Physo138530.3;Parent=Physo138530;constitutive=1;rank=3 scaffold_64 ensembl protein_coding_gene 207274 209125 . + . ID=Physo109150;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_640006;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 207274 209125 . + . ID=Physo109150;Parent=Physo109150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 207274 207483 . + 0 ID=Physo109150;Parent=Physo109150;rank=1 scaffold_64 . exon 207274 207483 . + . ID=Physo109150.1;Parent=Physo109150;constitutive=1;rank=1 scaffold_64 . CDS 207566 208094 . + 0 ID=Physo109150;Parent=Physo109150;rank=2 scaffold_64 . exon 207566 208094 . + . ID=Physo109150.2;Parent=Physo109150;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_64 . CDS 208175 208269 . + 0 ID=Physo109150;Parent=Physo109150;rank=3 scaffold_64 . exon 208175 208269 . + . ID=Physo109150.3;Parent=Physo109150;constitutive=1;ensembl_phase=1;rank=3 scaffold_64 . CDS 208349 209020 . + 0 ID=Physo109150;Parent=Physo109150;rank=4 scaffold_64 . exon 208349 209125 . + . ID=Physo109150.4;Parent=Physo109150;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_64 ensembl protein_coding_gene 213383 214301 . - . ID=Physo138533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640061;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 213383 214301 . - . ID=Physo138533;Parent=Physo138533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 213383 213855 . - 0 ID=Physo138533;Parent=Physo138533;rank=3 scaffold_64 . exon 213383 213855 . - . ID=Physo138533.3;Parent=Physo138533;constitutive=1;ensembl_phase=1;rank=3 scaffold_64 . CDS 214122 214211 . - 0 ID=Physo138533;Parent=Physo138533;rank=2 scaffold_64 . exon 214122 214211 . - . ID=Physo138533.2;Parent=Physo138533;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 214274 214301 . - 0 ID=Physo138533;Parent=Physo138533;rank=1 scaffold_64 . exon 214274 214301 . - . ID=Physo138533.1;Parent=Physo138533;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . repeat_region 216512 216527 . ? . description=dust scaffold_64 . repeat_region 217706 217715 . ? . description=dust scaffold_64 . repeat_region 217792 217799 . ? . description=dust scaffold_64 . biological_region 220439 220445 0.999 - . logic_name=eponine scaffold_64 . biological_region 224646 224650 0.999 - . logic_name=eponine scaffold_64 . repeat_region 224972 225012 . ? . description=trf scaffold_64 ensembl protein_coding_gene 218890 219565 . - . ID=Physo138534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640062;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 218890 219565 . - . ID=Physo138534;Parent=Physo138534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 218890 218912 . - 0 ID=Physo138534;Parent=Physo138534;rank=4 scaffold_64 . exon 218890 218912 . - . ID=Physo138534.4;Parent=Physo138534;constitutive=1;ensembl_phase=1;rank=4 scaffold_64 . CDS 218980 219256 . - 0 ID=Physo138534;Parent=Physo138534;rank=3 scaffold_64 . exon 218980 219256 . - . ID=Physo138534.3;Parent=Physo138534;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_64 . CDS 219302 219426 . - 0 ID=Physo138534;Parent=Physo138534;rank=2 scaffold_64 . exon 219302 219426 . - . ID=Physo138534.2;Parent=Physo138534;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 219520 219565 . - 0 ID=Physo138534;Parent=Physo138534;rank=1 scaffold_64 . exon 219520 219565 . - . ID=Physo138534.1;Parent=Physo138534;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 ensembl protein_coding_gene 220224 223138 . + . ID=Physo138535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640063;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 220224 223138 . + . ID=Physo138535;Parent=Physo138535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 220224 220842 . + 0 ID=Physo138535;Parent=Physo138535;rank=1 scaffold_64 . exon 220224 220842 . + . ID=Physo138535.1;Parent=Physo138535;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 . CDS 220871 221378 . + 0 ID=Physo138535;Parent=Physo138535;rank=2 scaffold_64 . exon 220871 221378 . + . ID=Physo138535.2;Parent=Physo138535;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_64 . CDS 221472 221541 . + 0 ID=Physo138535;Parent=Physo138535;rank=3 scaffold_64 . exon 221472 221541 . + . ID=Physo138535.3;Parent=Physo138535;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 221904 222052 . + 0 ID=Physo138535;Parent=Physo138535;rank=4 scaffold_64 . exon 221904 222052 . + . ID=Physo138535.4;Parent=Physo138535;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_64 . CDS 222098 222257 . + 0 ID=Physo138535;Parent=Physo138535;rank=5 scaffold_64 . exon 222098 222257 . + . ID=Physo138535.5;Parent=Physo138535;constitutive=1;ensembl_phase=2;rank=5 scaffold_64 . CDS 222313 223035 . + 0 ID=Physo138535;Parent=Physo138535;rank=6 scaffold_64 . exon 222313 223138 . + . ID=Physo138535.6;Parent=Physo138535;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_64 ensembl protein_coding_gene 223368 224950 . - . ID=Physo138536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640064;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 223368 224950 . - . ID=Physo138536;Parent=Physo138536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 223368 223443 . - 0 ID=Physo138536;Parent=Physo138536;rank=5 scaffold_64 . exon 223368 223443 . - . ID=Physo138536.5;Parent=Physo138536;constitutive=1;ensembl_phase=2;rank=5 scaffold_64 . CDS 223532 223755 . - 0 ID=Physo138536;Parent=Physo138536;rank=4 scaffold_64 . exon 223532 223755 . - . ID=Physo138536.4;Parent=Physo138536;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_64 . CDS 223989 224349 . - 0 ID=Physo138536;Parent=Physo138536;rank=3 scaffold_64 . exon 223989 224349 . - . ID=Physo138536.3;Parent=Physo138536;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 224417 224773 . - 0 ID=Physo138536;Parent=Physo138536;rank=2 scaffold_64 . exon 224417 224773 . - . ID=Physo138536.2;Parent=Physo138536;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_64 . CDS 224934 224950 . - 0 ID=Physo138536;Parent=Physo138536;rank=1 scaffold_64 . exon 224934 224950 . - . ID=Physo138536.1;Parent=Physo138536;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 232331 234139 . + . ID=Physo138537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640065;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 232331 234139 . + . ID=Physo138537;Parent=Physo138537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 232331 234139 . + 0 ID=Physo138537;Parent=Physo138537;rank=1 scaffold_64 . exon 232331 234139 . + . ID=Physo138537.1;Parent=Physo138537;constitutive=1;rank=1 scaffold_64 . repeat_region 237499 237532 . ? . description=trf scaffold_64 . repeat_region 238547 238596 . ? . description=dust scaffold_64 . biological_region 239130 239132 0.999 + . logic_name=eponine scaffold_64 . biological_region 239405 239410 0.999 + . logic_name=eponine scaffold_64 . repeat_region 239411 239460 . ? . description=dust scaffold_64 . biological_region 239660 239664 0.999 - . logic_name=eponine scaffold_64 . biological_region 239688 239689 0.999 - . logic_name=eponine scaffold_64 . repeat_region 244792 244820 . ? . description=dust scaffold_64 . repeat_region 245641 245649 . ? . description=dust scaffold_64 ensembl protein_coding_gene 243529 244377 . + . ID=Physo109151;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_640007;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 243529 244377 . + . ID=Physo109151;Parent=Physo109151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 243529 244377 . + 0 ID=Physo109151;Parent=Physo109151;rank=1 scaffold_64 . exon 243529 244377 . + . ID=Physo109151.1;Parent=Physo109151;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 243133 243393 . + . ID=Physo119542;biotype=protein_coding;external_name=estExt_Genewise1.C_640046;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 243133 243393 . + . ID=Physo119542;Parent=Physo119542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 243133 243393 . + . ID=Physo119542.1;Parent=Physo119542;constitutive=1;ensembl_phase=-1;rank=1 scaffold_64 . CDS 243172 243393 . + 0 ID=Physo119542;Parent=Physo119542;rank=1 scaffold_64 ensembl protein_coding_gene 238271 239694 . - . ID=Physo138538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640066;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 238271 239694 . - . ID=Physo138538;Parent=Physo138538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 238271 238423 . - 0 ID=Physo138538;Parent=Physo138538;rank=3 scaffold_64 . exon 238271 238423 . - . ID=Physo138538.3;Parent=Physo138538;constitutive=1;rank=3 scaffold_64 . CDS 238676 239364 . - 0 ID=Physo138538;Parent=Physo138538;rank=2 scaffold_64 . exon 238676 239364 . - . ID=Physo138538.2;Parent=Physo138538;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 239469 239694 . - 0 ID=Physo138538;Parent=Physo138538;rank=1 scaffold_64 . exon 239469 239694 . - . ID=Physo138538.1;Parent=Physo138538;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 ensembl protein_coding_gene 239999 240424 . + . ID=Physo138539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640067;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 239999 240424 . + . ID=Physo138539;Parent=Physo138539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 239999 240424 . + 0 ID=Physo138539;Parent=Physo138539;rank=1 scaffold_64 . exon 239999 240424 . + . ID=Physo138539.1;Parent=Physo138539;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 253583 255766 . + . ID=Physo138542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640070;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 253583 255766 . + . ID=Physo138542;Parent=Physo138542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 253583 254857 . + 0 ID=Physo138542;Parent=Physo138542;rank=1 scaffold_64 . exon 253583 254857 . + . ID=Physo138542.1;Parent=Physo138542;constitutive=1;rank=1 scaffold_64 . CDS 254945 255766 . + 0 ID=Physo138542;Parent=Physo138542;rank=2 scaffold_64 . exon 254945 255766 . + . ID=Physo138542.2;Parent=Physo138542;constitutive=1;rank=2 scaffold_64 . biological_region 258151 258155 0.999 - . logic_name=eponine scaffold_64 . repeat_region 259813 259838 . ? . description=trf scaffold_64 . repeat_region 260088 260108 . ? . description=trf scaffold_64 . repeat_region 264929 264936 . ? . description=dust scaffold_64 ensembl protein_coding_gene 257421 258653 . - . ID=Physo138543;biotype=protein_coding;description=Putative phospholipase D 1 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U0];external_name=estExt_fgenesh1_pg.C_640071;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 257421 258653 . - . ID=Physo138543;Parent=Physo138543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 257421 257699 . - 0 ID=Physo138543;Parent=Physo138543;rank=4 scaffold_64 . exon 257421 257699 . - . ID=Physo138543.4;Parent=Physo138543;constitutive=1;rank=4 scaffold_64 . CDS 257730 257933 . - 0 ID=Physo138543;Parent=Physo138543;rank=3 scaffold_64 . exon 257730 257933 . - . ID=Physo138543.3;Parent=Physo138543;constitutive=1;rank=3 scaffold_64 . CDS 258001 258223 . - 0 ID=Physo138543;Parent=Physo138543;rank=2 scaffold_64 . exon 258001 258223 . - . ID=Physo138543.2;Parent=Physo138543;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 258544 258653 . - 0 ID=Physo138543;Parent=Physo138543;rank=1 scaffold_64 . exon 258544 258653 . - . ID=Physo138543.1;Parent=Physo138543;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 262113 263863 . - . ID=Physo138544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640072;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 262113 263863 . - . ID=Physo138544;Parent=Physo138544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 262113 263052 . - 0 ID=Physo138544;Parent=Physo138544;rank=2 scaffold_64 . exon 262113 263052 . - . ID=Physo138544.2;Parent=Physo138544;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 263097 263863 . - 0 ID=Physo138544;Parent=Physo138544;rank=1 scaffold_64 . exon 263097 263863 . - . ID=Physo138544.1;Parent=Physo138544;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 267129 268874 . + . ID=Physo138545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640073;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 267129 268874 . + . ID=Physo138545;Parent=Physo138545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 267129 267332 . + 0 ID=Physo138545;Parent=Physo138545;rank=1 scaffold_64 . exon 267129 267332 . + . ID=Physo138545.1;Parent=Physo138545;constitutive=1;rank=1 scaffold_64 . CDS 267394 268623 . + 0 ID=Physo138545;Parent=Physo138545;rank=2 scaffold_64 . exon 267394 268623 . + . ID=Physo138545.2;Parent=Physo138545;constitutive=1;rank=2 scaffold_64 . CDS 268695 268874 . + 0 ID=Physo138545;Parent=Physo138545;rank=3 scaffold_64 . exon 268695 268874 . + . ID=Physo138545.3;Parent=Physo138545;constitutive=1;rank=3 scaffold_64 ensembl protein_coding_gene 269126 269723 . - . ID=Physo138546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640074;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 269126 269723 . - . ID=Physo138546;Parent=Physo138546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 269126 269490 . - 0 ID=Physo138546;Parent=Physo138546;rank=2 scaffold_64 . exon 269126 269490 . - . ID=Physo138546.2;Parent=Physo138546;constitutive=1;ensembl_phase=1;rank=2 scaffold_64 . CDS 269555 269723 . - 0 ID=Physo138546;Parent=Physo138546;rank=1 scaffold_64 . exon 269555 269723 . - . ID=Physo138546.1;Parent=Physo138546;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_64 ensembl protein_coding_gene 274430 274855 . + . ID=Physo138547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640075;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 274430 274855 . + . ID=Physo138547;Parent=Physo138547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 274430 274855 . + 0 ID=Physo138547;Parent=Physo138547;rank=1 scaffold_64 . exon 274430 274855 . + . ID=Physo138547.1;Parent=Physo138547;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 275353 275832 . - . ID=Physo138548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640076;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 275353 275832 . - . ID=Physo138548;Parent=Physo138548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 275353 275832 . - 0 ID=Physo138548;Parent=Physo138548;rank=1 scaffold_64 . exon 275353 275832 . - . ID=Physo138548.1;Parent=Physo138548;constitutive=1;rank=1 scaffold_64 . repeat_region 275512 275566 . ? . description=trf scaffold_64 . biological_region 276787 276792 0.999 + . logic_name=eponine scaffold_64 . biological_region 276819 276819 0.999 + . logic_name=eponine scaffold_64 . biological_region 278915 278916 0.999 + . logic_name=eponine scaffold_64 . biological_region 279070 279072 0.999 - . logic_name=eponine scaffold_64 . biological_region 279304 279306 0.999 + . logic_name=eponine scaffold_64 . biological_region 279495 279497 0.999 + . logic_name=eponine scaffold_64 . biological_region 280356 280356 0.999 + . logic_name=eponine scaffold_64 . repeat_region 282486 282519 . ? . description=dust scaffold_64 . repeat_region 282493 282519 . ? . description=trf scaffold_64 . biological_region 282979 282982 0.999 + . logic_name=eponine scaffold_64 . biological_region 283823 283831 0.999 + . logic_name=eponine scaffold_64 . biological_region 283882 283883 0.999 - . logic_name=eponine scaffold_64 ensembl protein_coding_gene 276758 277117 . - . ID=Physo138549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640077;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 276758 277117 . - . ID=Physo138549;Parent=Physo138549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 276758 277117 . - 0 ID=Physo138549;Parent=Physo138549;rank=1 scaffold_64 . exon 276758 277117 . - . ID=Physo138549.1;Parent=Physo138549;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 277602 278081 . + . ID=Physo138550;biotype=protein_coding;description=Elicitin-like protein SOL13I [Source:UniProtKB/TrEMBL%3BAcc:Q2N064];external_name=estExt_fgenesh1_pg.C_640078;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 277602 278081 . + . ID=Physo138550;Parent=Physo138550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 277602 278081 . + 0 ID=Physo138550;Parent=Physo138550;rank=1 scaffold_64 . exon 277602 278081 . + . ID=Physo138550.1;Parent=Physo138550;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 278898 279688 . + . ID=Physo138551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640079;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 278898 279688 . + . ID=Physo138551;Parent=Physo138551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 278898 279599 . + 0 ID=Physo138551;Parent=Physo138551;rank=1 scaffold_64 . exon 278898 279688 . + . ID=Physo138551.1;Parent=Physo138551;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_64 ensembl protein_coding_gene 283585 284967 . + . ID=Physo138554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640082;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 283585 284967 . + . ID=Physo138554;Parent=Physo138554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 283585 284967 . + 0 ID=Physo138554;Parent=Physo138554;rank=1 scaffold_64 . exon 283585 284967 . + . ID=Physo138554.1;Parent=Physo138554;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 285302 286534 . - . ID=Physo138555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640083;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 285302 286534 . - . ID=Physo138555;Parent=Physo138555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 285302 286357 . - 0 ID=Physo138555;Parent=Physo138555;rank=2 scaffold_64 . exon 285302 286357 . - . ID=Physo138555.2;Parent=Physo138555;constitutive=1;rank=2 scaffold_64 . CDS 286424 286534 . - 0 ID=Physo138555;Parent=Physo138555;rank=1 scaffold_64 ensembl protein_coding_gene 280339 280554 . + . ID=Physo157848;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84XT5];external_name=C_scaffold_64000013;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 280339 280554 . + . ID=Physo157848;Parent=Physo157848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 280339 280554 . + 0 ID=Physo157848;Parent=Physo157848;rank=1 scaffold_64 . exon 280339 280554 . + . ID=Physo157848.1;Parent=Physo157848;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 280782 283229 . - . ID=Physo157849;biotype=protein_coding;external_name=C_scaffold_64000014;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 280782 283229 . - . ID=Physo157849;Parent=Physo157849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 280782 281527 . - 0 ID=Physo157849;Parent=Physo157849;rank=7 scaffold_64 . exon 280782 281527 . - . ID=Physo157849.7;Parent=Physo157849;constitutive=1;ensembl_phase=1;rank=7 scaffold_64 . CDS 281558 281805 . - 0 ID=Physo157849;Parent=Physo157849;rank=6 scaffold_64 . exon 281558 281805 . - . ID=Physo157849.6;Parent=Physo157849;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_64 . CDS 282049 282272 . - 0 ID=Physo157849;Parent=Physo157849;rank=5 scaffold_64 . exon 282049 282272 . - . ID=Physo157849.5;Parent=Physo157849;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_64 . CDS 282339 282476 . - 0 ID=Physo157849;Parent=Physo157849;rank=4 scaffold_64 . exon 282339 282476 . - . ID=Physo157849.4;Parent=Physo157849;constitutive=1;rank=4 scaffold_64 . CDS 282560 282617 . - 0 ID=Physo157849;Parent=Physo157849;rank=3 scaffold_64 . exon 282560 282617 . - . ID=Physo157849.3;Parent=Physo157849;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 282697 282819 . - 0 ID=Physo157849;Parent=Physo157849;rank=2 scaffold_64 . exon 282697 282819 . - . ID=Physo157849.2;Parent=Physo157849;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_64 . CDS 282916 283229 . - 0 ID=Physo157849;Parent=Physo157849;rank=1 scaffold_64 . exon 282916 283229 . - . ID=Physo157849.1;Parent=Physo157849;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . exon 286424 286534 . - . ID=Physo138555.1;Parent=Physo138555;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 286801 288380 . - . ID=Physo138556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640084;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 286801 288380 . - . ID=Physo138556;Parent=Physo138556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 286801 288033 . - . ID=Physo138556.2;Parent=Physo138556;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_64 . CDS 286909 288033 . - 0 ID=Physo138556;Parent=Physo138556;rank=2 scaffold_64 . CDS 288132 288380 . - 0 ID=Physo138556;Parent=Physo138556;rank=1 scaffold_64 . exon 288132 288380 . - . ID=Physo138556.1;Parent=Physo138556;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 289249 290456 . - . ID=Physo138557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640085;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 289249 290456 . - . ID=Physo138557;Parent=Physo138557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 289249 290385 . - 0 ID=Physo138557;Parent=Physo138557;rank=1 scaffold_64 . exon 289249 290456 . - . ID=Physo138557.1;Parent=Physo138557;constitutive=1;ensembl_phase=-1;rank=1 scaffold_64 ensembl protein_coding_gene 291254 292354 . - . ID=Physo138558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640086;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 291254 292354 . - . ID=Physo138558;Parent=Physo138558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 291254 292354 . - 0 ID=Physo138558;Parent=Physo138558;rank=1 scaffold_64 . exon 291254 292354 . - . ID=Physo138558.1;Parent=Physo138558;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 293380 294492 . - . ID=Physo138559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640087;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 293380 294492 . - . ID=Physo138559;Parent=Physo138559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 293380 294492 . - 0 ID=Physo138559;Parent=Physo138559;rank=1 scaffold_64 . exon 293380 294492 . - . ID=Physo138559.1;Parent=Physo138559;constitutive=1;rank=1 scaffold_64 . repeat_region 296980 297173 . ? . description=trf scaffold_64 . repeat_region 297031 297157 . ? . description=trf scaffold_64 . repeat_region 297038 297186 . ? . description=trf scaffold_64 . repeat_region 297502 297564 . ? . description=trf scaffold_64 . repeat_region 298894 298903 . ? . description=dust scaffold_64 . biological_region 299060 299063 0.999 - . logic_name=eponine scaffold_64 . repeat_region 299759 299771 . ? . description=dust scaffold_64 . repeat_region 302167 302177 . ? . description=dust scaffold_64 . biological_region 304523 304526 0.999 + . logic_name=eponine scaffold_64 ensembl protein_coding_gene 300745 301765 . - . ID=Physo138560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640088;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 300745 301765 . - . ID=Physo138560;Parent=Physo138560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 300745 301237 . - 0 ID=Physo138560;Parent=Physo138560;rank=3 scaffold_64 . exon 300745 301237 . - . ID=Physo138560.3;Parent=Physo138560;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 301279 301470 . - 0 ID=Physo138560;Parent=Physo138560;rank=2 scaffold_64 . exon 301279 301470 . - . ID=Physo138560.2;Parent=Physo138560;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_64 . CDS 301644 301765 . - 0 ID=Physo138560;Parent=Physo138560;rank=1 scaffold_64 . exon 301644 301765 . - . ID=Physo138560.1;Parent=Physo138560;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 305088 306176 . + . ID=Physo138561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640089;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 305088 306176 . + . ID=Physo138561;Parent=Physo138561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 305088 306176 . + 0 ID=Physo138561;Parent=Physo138561;rank=1 scaffold_64 . exon 305088 306176 . + . ID=Physo138561.1;Parent=Physo138561;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 307055 307771 . + . ID=Physo138562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640090;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 307055 307771 . + . ID=Physo138562;Parent=Physo138562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 307055 307771 . + 0 ID=Physo138562;Parent=Physo138562;rank=1 scaffold_64 . exon 307055 307771 . + . ID=Physo138562.1;Parent=Physo138562;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 309021 309698 . - . ID=Physo138563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640091;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 309021 309698 . - . ID=Physo138563;Parent=Physo138563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 309021 309698 . - 0 ID=Physo138563;Parent=Physo138563;rank=1 scaffold_64 . exon 309021 309698 . - . ID=Physo138563.1;Parent=Physo138563;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 313205 313901 . - . ID=Physo138564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640092;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 313205 313901 . - . ID=Physo138564;Parent=Physo138564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 313205 313366 . - 0 ID=Physo138564;Parent=Physo138564;rank=3 scaffold_64 . exon 313205 313366 . - . ID=Physo138564.3;Parent=Physo138564;constitutive=1;rank=3 scaffold_64 . CDS 313547 313556 . - 0 ID=Physo138564;Parent=Physo138564;rank=2 scaffold_64 . exon 313547 313556 . - . ID=Physo138564.2;Parent=Physo138564;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 313639 313901 . - 0 ID=Physo138564;Parent=Physo138564;rank=1 scaffold_64 . exon 313639 313901 . - . ID=Physo138564.1;Parent=Physo138564;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . repeat_region 319289 319387 . ? . description=trf scaffold_64 . repeat_region 323217 323337 . ? . description=trf scaffold_64 ensembl protein_coding_gene 320990 321811 . - . ID=Physo138565;biotype=protein_coding;description=PsAvh105 [Source:UniProtKB/TrEMBL%3BAcc:E0W5B9];external_name=estExt_fgenesh1_pg.C_640093;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 320990 321811 . - . ID=Physo138565;Parent=Physo138565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 320990 321811 . - 0 ID=Physo138565;Parent=Physo138565;rank=1 scaffold_64 . exon 320990 321811 . - . ID=Physo138565.1;Parent=Physo138565;constitutive=1;rank=1 scaffold_64 . repeat_region 325350 325360 . ? . description=dust scaffold_64 . biological_region 325399 325402 0.999 + . logic_name=eponine scaffold_64 . repeat_region 328430 328440 . ? . description=dust scaffold_64 . repeat_region 328666 328674 . ? . description=dust scaffold_64 . repeat_region 333631 333638 . ? . description=dust scaffold_64 ensembl protein_coding_gene 326128 327909 . - . ID=Physo138566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640094;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 326128 327909 . - . ID=Physo138566;Parent=Physo138566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 326128 327909 . - 0 ID=Physo138566;Parent=Physo138566;rank=1 scaffold_64 . exon 326128 327909 . - . ID=Physo138566.1;Parent=Physo138566;constitutive=1;rank=1 scaffold_64 . repeat_region 337387 337409 . ? . description=trf scaffold_64 ensembl protein_coding_gene 336525 337369 . - . ID=Physo138567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640095;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 336525 337369 . - . ID=Physo138567;Parent=Physo138567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 336525 336534 . - 0 ID=Physo138567;Parent=Physo138567;rank=2 scaffold_64 . exon 336525 336534 . - . ID=Physo138567.2;Parent=Physo138567;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 336621 337369 . - 0 ID=Physo138567;Parent=Physo138567;rank=1 scaffold_64 . exon 336621 337369 . - . ID=Physo138567.1;Parent=Physo138567;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 341130 341741 . - . ID=Physo138568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640096;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 341130 341741 . - . ID=Physo138568;Parent=Physo138568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 341130 341145 . - 0 ID=Physo138568;Parent=Physo138568;rank=3 scaffold_64 . exon 341130 341145 . - . ID=Physo138568.3;Parent=Physo138568;constitutive=1;ensembl_phase=2;rank=3 scaffold_64 . CDS 341168 341361 . - 0 ID=Physo138568;Parent=Physo138568;rank=2 scaffold_64 . exon 341168 341361 . - . ID=Physo138568.2;Parent=Physo138568;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_64 . CDS 341454 341741 . - 0 ID=Physo138568;Parent=Physo138568;rank=1 scaffold_64 . exon 341454 341741 . - . ID=Physo138568.1;Parent=Physo138568;constitutive=1;rank=1 scaffold_64 . biological_region 346329 346331 0.999 + . logic_name=eponine scaffold_64 . biological_region 347384 347387 0.999 + . logic_name=eponine scaffold_64 . biological_region 347432 347435 0.999 + . logic_name=eponine scaffold_64 . biological_region 347464 347470 0.999 - . logic_name=eponine scaffold_64 . biological_region 347509 347513 0.999 - . logic_name=eponine scaffold_64 . biological_region 347537 347541 0.999 - . logic_name=eponine scaffold_64 . biological_region 347558 347559 0.999 - . logic_name=eponine scaffold_64 . biological_region 347589 347594 0.999 - . logic_name=eponine scaffold_64 . biological_region 347590 347597 0.999 + . logic_name=eponine scaffold_64 . biological_region 347613 347614 0.999 - . logic_name=eponine scaffold_64 . biological_region 348131 348135 0.999 + . logic_name=eponine scaffold_64 . repeat_region 348181 348244 . ? . description=dust scaffold_64 . biological_region 348218 348227 0.999 - . logic_name=eponine scaffold_64 . biological_region 348235 348236 0.999 + . logic_name=eponine scaffold_64 . biological_region 348245 348247 0.999 - . logic_name=eponine scaffold_64 . biological_region 348247 348252 0.999 + . logic_name=eponine scaffold_64 . biological_region 348272 348281 0.999 + . logic_name=eponine scaffold_64 . biological_region 348273 348276 0.999 - . logic_name=eponine scaffold_64 . biological_region 348283 348288 0.999 - . logic_name=eponine scaffold_64 . biological_region 348299 348306 0.999 + . logic_name=eponine scaffold_64 . biological_region 348324 348332 0.999 + . logic_name=eponine scaffold_64 . biological_region 348335 348350 0.999 - . logic_name=eponine scaffold_64 . repeat_region 348473 348480 . ? . description=dust scaffold_64 . repeat_region 348960 348968 . ? . description=dust scaffold_64 . biological_region 349198 349198 0.999 + . logic_name=eponine scaffold_64 . biological_region 349302 349306 0.999 + . logic_name=eponine scaffold_64 . biological_region 349381 349387 0.999 - . logic_name=eponine scaffold_64 . biological_region 349436 349444 0.999 - . logic_name=eponine scaffold_64 . biological_region 349455 349458 0.999 - . logic_name=eponine scaffold_64 . biological_region 349510 349516 0.999 + . logic_name=eponine scaffold_64 . biological_region 349528 349534 0.999 + . logic_name=eponine scaffold_64 . biological_region 349557 349558 0.999 - . logic_name=eponine scaffold_64 . biological_region 349599 349599 0.999 + . logic_name=eponine scaffold_64 . biological_region 349633 349640 0.999 - . logic_name=eponine scaffold_64 . biological_region 349878 349882 0.999 - . logic_name=eponine scaffold_64 . biological_region 350095 350095 0.999 + . logic_name=eponine scaffold_64 . biological_region 350142 350143 0.999 - . logic_name=eponine scaffold_64 . biological_region 351718 351723 0.999 - . logic_name=eponine scaffold_64 ensembl protein_coding_gene 345224 346923 . + . ID=Physo138569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640097;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 345224 346923 . + . ID=Physo138569;Parent=Physo138569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 345224 346809 . + 0 ID=Physo138569;Parent=Physo138569;rank=1 scaffold_64 . exon 345224 346809 . + . ID=Physo138569.1;Parent=Physo138569;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 346887 346923 . + 0 ID=Physo138569;Parent=Physo138569;rank=2 scaffold_64 . exon 346887 346923 . + . ID=Physo138569.2;Parent=Physo138569;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 ensembl protein_coding_gene 347133 348431 . - . ID=Physo138570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640098;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 347133 348431 . - . ID=Physo138570;Parent=Physo138570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 347133 348431 . - 0 ID=Physo138570;Parent=Physo138570;rank=1 scaffold_64 . exon 347133 348431 . - . ID=Physo138570.1;Parent=Physo138570;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 349159 349686 . - . ID=Physo138571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640099;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 349159 349686 . - . ID=Physo138571;Parent=Physo138571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 349159 349686 . - 0 ID=Physo138571;Parent=Physo138571;rank=1 scaffold_64 . exon 349159 349686 . - . ID=Physo138571.1;Parent=Physo138571;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 350545 350949 . - . ID=Physo138572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640100;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 350545 350949 . - . ID=Physo138572;Parent=Physo138572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 350545 350949 . - 0 ID=Physo138572;Parent=Physo138572;rank=1 scaffold_64 . exon 350545 350949 . - . ID=Physo138572.1;Parent=Physo138572;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 351626 352036 . - . ID=Physo138573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640101;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 351626 352036 . - . ID=Physo138573;Parent=Physo138573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 351626 352036 . - 0 ID=Physo138573;Parent=Physo138573;rank=1 scaffold_64 . exon 351626 352036 . - . ID=Physo138573.1;Parent=Physo138573;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 353038 353908 . + . ID=Physo138574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640102;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 353038 353908 . + . ID=Physo138574;Parent=Physo138574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 353038 353351 . + 0 ID=Physo138574;Parent=Physo138574;rank=1 scaffold_64 . exon 353038 353351 . + . ID=Physo138574.1;Parent=Physo138574;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 353401 353414 . + 0 ID=Physo138574;Parent=Physo138574;rank=2 scaffold_64 . exon 353401 353414 . + . ID=Physo138574.2;Parent=Physo138574;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 353445 353908 . + 0 ID=Physo138574;Parent=Physo138574;rank=3 scaffold_64 . exon 353445 353908 . + . ID=Physo138574.3;Parent=Physo138574;constitutive=1;ensembl_phase=1;rank=3 scaffold_64 ensembl protein_coding_gene 358436 359755 . - . ID=Physo138575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640103;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 358436 359755 . - . ID=Physo138575;Parent=Physo138575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 358436 358939 . - 0 ID=Physo138575;Parent=Physo138575;rank=3 scaffold_64 . exon 358436 358939 . - . ID=Physo138575.3;Parent=Physo138575;constitutive=1;rank=3 scaffold_64 . CDS 358968 359534 . - 0 ID=Physo138575;Parent=Physo138575;rank=2 scaffold_64 . exon 358968 359534 . - . ID=Physo138575.2;Parent=Physo138575;constitutive=1;rank=2 scaffold_64 . CDS 359582 359755 . - 0 ID=Physo138575;Parent=Physo138575;rank=1 scaffold_64 . exon 359582 359755 . - . ID=Physo138575.1;Parent=Physo138575;constitutive=1;rank=1 scaffold_64 ensembl protein_coding_gene 362302 364655 . - . ID=Physo138576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640104;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 362302 364655 . - . ID=Physo138576;Parent=Physo138576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 362302 364655 . - . ID=Physo138576.1;Parent=Physo138576;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_64 . CDS 362400 364655 . - 0 ID=Physo138576;Parent=Physo138576;rank=1 scaffold_64 . biological_region 364471 364471 0.999 + . logic_name=eponine scaffold_64 . biological_region 364500 364506 0.999 - . logic_name=eponine scaffold_64 . repeat_region 364591 364610 . ? . description=trf scaffold_64 . repeat_region 373676 373683 . ? . description=dust scaffold_64 ensembl protein_coding_gene 371474 373343 . - . ID=Physo138577;biotype=protein_coding;description=Putative zinc finger protein 1 [Source:UniProtKB/TrEMBL%3BAcc:B5M4V0];external_name=estExt_fgenesh1_pg.C_640105;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 371474 373343 . - . ID=Physo138577;Parent=Physo138577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 371474 372866 . - 0 ID=Physo138577;Parent=Physo138577;rank=2 scaffold_64 . exon 371474 372866 . - . ID=Physo138577.2;Parent=Physo138577;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 372937 373343 . - 0 ID=Physo138577;Parent=Physo138577;rank=1 scaffold_64 . exon 372937 373343 . - . ID=Physo138577.1;Parent=Physo138577;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 ensembl protein_coding_gene 380953 381979 . - . ID=Physo109153;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_640009;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 380953 381979 . - . ID=Physo109153;Parent=Physo109153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 380953 381726 . - 0 ID=Physo109153;Parent=Physo109153;rank=2 scaffold_64 . exon 380953 381726 . - . ID=Physo109153.2;Parent=Physo109153;constitutive=1;rank=2 scaffold_64 . CDS 381807 381896 . - 0 ID=Physo109153;Parent=Physo109153;rank=1 scaffold_64 . exon 381807 381979 . - . ID=Physo109153.1;Parent=Physo109153;constitutive=1;ensembl_phase=-1;rank=1 scaffold_64 ensembl protein_coding_gene 377394 378978 . + . ID=Physo119497;biotype=protein_coding;external_name=estExt_Genewise1.C_640001;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 377394 378978 . + . ID=Physo119497;Parent=Physo119497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . exon 377394 377891 . + . ID=Physo119497.1;Parent=Physo119497;constitutive=1;ensembl_phase=-1;rank=1 scaffold_64 . CDS 377448 377891 . + 0 ID=Physo119497;Parent=Physo119497;rank=1 scaffold_64 . CDS 377961 378067 . + 0 ID=Physo119497;Parent=Physo119497;rank=2 scaffold_64 . exon 377961 378067 . + . ID=Physo119497.2;Parent=Physo119497;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_64 . CDS 378139 378240 . + 0 ID=Physo119497;Parent=Physo119497;rank=3 scaffold_64 . exon 378139 378240 . + . ID=Physo119497.3;Parent=Physo119497;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_64 . CDS 378312 378573 . + 0 ID=Physo119497;Parent=Physo119497;rank=4 scaffold_64 . exon 378312 378573 . + . ID=Physo119497.4;Parent=Physo119497;constitutive=1;ensembl_phase=2;rank=4 scaffold_64 . CDS 378641 378709 . + 0 ID=Physo119497;Parent=Physo119497;rank=5 scaffold_64 . exon 378641 378709 . + . ID=Physo119497.5;Parent=Physo119497;constitutive=1;rank=5 scaffold_64 . CDS 378790 378978 . + 0 ID=Physo119497;Parent=Physo119497;rank=6 scaffold_64 . exon 378790 378978 . + . ID=Physo119497.6;Parent=Physo119497;constitutive=1;rank=6 scaffold_64 ensembl protein_coding_gene 382956 386098 . + . ID=Physo138580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640108;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 382956 386098 . + . ID=Physo138580;Parent=Physo138580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 382956 383242 . + 0 ID=Physo138580;Parent=Physo138580;rank=1 scaffold_64 . exon 382956 383242 . + . ID=Physo138580.1;Parent=Physo138580;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_64 . CDS 383392 383611 . + 0 ID=Physo138580;Parent=Physo138580;rank=2 scaffold_64 . exon 383392 383611 . + . ID=Physo138580.2;Parent=Physo138580;constitutive=1;ensembl_phase=2;rank=2 scaffold_64 . CDS 383837 383923 . + 0 ID=Physo138580;Parent=Physo138580;rank=3 scaffold_64 . CDS 384015 384386 . + 0 ID=Physo138580;Parent=Physo138580;rank=4 scaffold_64 . CDS 384557 386098 . + 0 ID=Physo138580;Parent=Physo138580;rank=5 scaffold_64 . biological_region 384201 384206 0.999 + . logic_name=eponine scaffold_64 . biological_region 385731 385739 0.999 - . logic_name=eponine scaffold_64 . biological_region 388758 388759 0.999 - . logic_name=eponine scaffold_64 . repeat_region 392334 392413 . ? . description=trf scaffold_64 . biological_region 392529 392533 0.999 - . logic_name=eponine scaffold_64 . biological_region 392586 392587 0.999 + . logic_name=eponine scaffold_64 . biological_region 392617 392620 0.999 + . logic_name=eponine scaffold_64 . repeat_region 392625 392711 . ? . description=trf scaffold_64 . biological_region 392734 392740 0.999 - . logic_name=eponine scaffold_64 . repeat_region 392766 392830 . ? . description=trf scaffold_64 . biological_region 392809 392811 0.999 - . logic_name=eponine scaffold_64 . repeat_region 392826 392884 . ? . description=trf scaffold_64 . exon 383837 383923 . + . ID=Physo138580.3;Parent=Physo138580;constitutive=1;rank=3 scaffold_64 . exon 384015 384386 . + . ID=Physo138580.4;Parent=Physo138580;constitutive=1;rank=4 scaffold_64 . exon 384557 386098 . + . ID=Physo138580.5;Parent=Physo138580;constitutive=1;rank=5 scaffold_64 ensembl protein_coding_gene 392240 393133 . - . ID=Physo138581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_640109;logic_name=jgi_physo1_1 scaffold_64 ensembl transcript 392240 393133 . - . ID=Physo138581;Parent=Physo138581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_64 . CDS 392240 393133 . - 0 ID=Physo138581;Parent=Physo138581;rank=1 scaffold_64 . exon 392240 393133 . - . ID=Physo138581.1;Parent=Physo138581;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_76 1 393728 scaffold_76 . repeat_region 1 1132 . - . description=GypsyPi-1c_I-int scaffold_76 . biological_region 1628 1630 0.999 - . logic_name=eponine scaffold_76 . biological_region 1704 1705 0.999 + . logic_name=eponine scaffold_76 . biological_region 1730 1733 0.999 - . logic_name=eponine scaffold_76 . biological_region 1782 1784 0.999 - . logic_name=eponine scaffold_76 . biological_region 1816 1820 0.999 - . logic_name=eponine scaffold_76 . biological_region 1838 1838 0.999 + . logic_name=eponine scaffold_76 . biological_region 1856 1860 0.999 - . logic_name=eponine scaffold_76 . biological_region 1873 1875 0.999 + . logic_name=eponine scaffold_76 . biological_region 1895 1899 0.999 - . logic_name=eponine scaffold_76 . biological_region 1934 1934 0.999 - . logic_name=eponine scaffold_76 . biological_region 2307 2308 0.999 + . logic_name=eponine scaffold_76 . repeat_region 4822 4829 . ? . description=dust scaffold_76 . repeat_region 5982 5989 . ? . description=dust scaffold_76 . repeat_region 8767 8777 . ? . description=dust scaffold_76 . biological_region 9103 9104 0.999 - . logic_name=eponine scaffold_76 . repeat_region 9615 9624 . ? . description=dust scaffold_76 ensembl protein_coding_gene 386 1808 . - . ID=Physo139590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760001;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 386 1808 . - . ID=Physo139590;Parent=Physo139590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . exon 386 1505 . - . ID=Physo139590.2;Parent=Physo139590;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_76 . CDS 388 1505 . - 0 ID=Physo139590;Parent=Physo139590;rank=2 scaffold_76 . CDS 1547 1808 . - 0 ID=Physo139590;Parent=Physo139590;rank=1 scaffold_76 . exon 1547 1808 . - . ID=Physo139590.1;Parent=Physo139590;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . repeat_region 10597 10636 . ? . description=trf scaffold_76 . biological_region 19800 19800 0.999 - . logic_name=eponine scaffold_76 . repeat_region 21055 21065 . ? . description=dust scaffold_76 . biological_region 21405 21410 0.999 - . logic_name=eponine scaffold_76 . biological_region 21976 21978 0.999 - . logic_name=eponine scaffold_76 . biological_region 24145 24151 0.999 + . logic_name=eponine scaffold_76 ensembl protein_coding_gene 23094 28897 . - . ID=Physo139591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760002;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 23094 28897 . - . ID=Physo139591;Parent=Physo139591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 23094 23119 . - 0 ID=Physo139591;Parent=Physo139591;rank=2 scaffold_76 . exon 23094 23119 . - . ID=Physo139591.2;Parent=Physo139591;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 23293 28897 . - 0 ID=Physo139591;Parent=Physo139591;rank=1 scaffold_76 . exon 23293 28897 . - . ID=Physo139591.1;Parent=Physo139591;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 29191 32379 . - . ID=Physo139592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760003;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 29191 32379 . - . ID=Physo139592;Parent=Physo139592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 29191 32379 . - 0 ID=Physo139592;Parent=Physo139592;rank=1 scaffold_76 . exon 29191 32379 . - . ID=Physo139592.1;Parent=Physo139592;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 36689 38247 . - . ID=Physo158010;biotype=protein_coding;external_name=C_scaffold_76000002;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 36689 38247 . - . ID=Physo158010;Parent=Physo158010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 36689 36840 . - 0 ID=Physo158010;Parent=Physo158010;rank=3 scaffold_76 . exon 36689 36840 . - . ID=Physo158010.3;Parent=Physo158010;constitutive=1;ensembl_phase=1;rank=3 scaffold_76 . CDS 36945 37709 . - 0 ID=Physo158010;Parent=Physo158010;rank=2 scaffold_76 . exon 36945 37709 . - . ID=Physo158010.2;Parent=Physo158010;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 37785 38247 . - 0 ID=Physo158010;Parent=Physo158010;rank=1 scaffold_76 . exon 37785 38247 . - . ID=Physo158010.1;Parent=Physo158010;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 38524 40230 . - . ID=Physo158011;biotype=protein_coding;external_name=C_scaffold_76000003;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 38524 40230 . - . ID=Physo158011;Parent=Physo158011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 38524 38784 . - 0 ID=Physo158011;Parent=Physo158011;rank=3 scaffold_76 . exon 38524 38784 . - . ID=Physo158011.3;Parent=Physo158011;constitutive=1;rank=3 scaffold_76 . CDS 38812 40063 . - 0 ID=Physo158011;Parent=Physo158011;rank=2 scaffold_76 . exon 38812 40063 . - . ID=Physo158011.2;Parent=Physo158011;constitutive=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 40100 40230 . - 0 ID=Physo158011;Parent=Physo158011;rank=1 scaffold_76 . biological_region 39985 39990 0.999 + . logic_name=eponine scaffold_76 . biological_region 40126 40126 0.999 + . logic_name=eponine scaffold_76 . repeat_region 40651 40674 . ? . description=trf scaffold_76 . biological_region 40673 40679 0.999 + . logic_name=eponine scaffold_76 . repeat_region 41099 41136 . ? . description=dust scaffold_76 . biological_region 46276 46277 0.999 + . logic_name=eponine scaffold_76 . biological_region 46699 46705 0.999 + . logic_name=eponine scaffold_76 . repeat_region 48056 48083 . ? . description=trf scaffold_76 ensembl protein_coding_gene 43676 45196 . - . ID=Physo139596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760007;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 43676 45196 . - . ID=Physo139596;Parent=Physo139596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . exon 43676 45196 . - . ID=Physo139596.1;Parent=Physo139596;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_76 . CDS 43754 45196 . - 0 ID=Physo139596;Parent=Physo139596;rank=1 scaffold_76 ensembl protein_coding_gene 45837 46946 . - . ID=Physo139597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760008;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 45837 46946 . - . ID=Physo139597;Parent=Physo139597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 45837 46946 . - 0 ID=Physo139597;Parent=Physo139597;rank=1 scaffold_76 . exon 45837 46946 . - . ID=Physo139597.1;Parent=Physo139597;constitutive=1;rank=1 scaffold_76 . exon 40100 40230 . - . ID=Physo158011.1;Parent=Physo158011;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 40456 43668 . + . ID=Physo158013;biotype=protein_coding;external_name=C_scaffold_76000005;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 40456 43668 . + . ID=Physo158013;Parent=Physo158013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 40456 41046 . + 0 ID=Physo158013;Parent=Physo158013;rank=1 scaffold_76 . exon 40456 41046 . + . ID=Physo158013.1;Parent=Physo158013;constitutive=1;rank=1 scaffold_76 . CDS 41440 42192 . + 0 ID=Physo158013;Parent=Physo158013;rank=2 scaffold_76 . exon 41440 42192 . + . ID=Physo158013.2;Parent=Physo158013;constitutive=1;rank=2 scaffold_76 . CDS 42307 42544 . + 0 ID=Physo158013;Parent=Physo158013;rank=3 scaffold_76 . exon 42307 42544 . + . ID=Physo158013.3;Parent=Physo158013;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_76 . CDS 42611 43375 . + 0 ID=Physo158013;Parent=Physo158013;rank=4 scaffold_76 . exon 42611 43375 . + . ID=Physo158013.4;Parent=Physo158013;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_76 . CDS 43589 43668 . + 0 ID=Physo158013;Parent=Physo158013;rank=5 scaffold_76 . exon 43589 43668 . + . ID=Physo158013.5;Parent=Physo158013;constitutive=1;ensembl_phase=1;rank=5 scaffold_76 ensembl protein_coding_gene 49331 50039 . - . ID=Physo139598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760009;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 49331 50039 . - . ID=Physo139598;Parent=Physo139598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 49331 49844 . - 0 ID=Physo139598;Parent=Physo139598;rank=2 scaffold_76 . exon 49331 49844 . - . ID=Physo139598.2;Parent=Physo139598;constitutive=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 49975 50039 . - 0 ID=Physo139598;Parent=Physo139598;rank=1 scaffold_76 . exon 49975 50039 . - . ID=Physo139598.1;Parent=Physo139598;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 50326 52700 . - . ID=Physo139599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760010;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 50326 52700 . - . ID=Physo139599;Parent=Physo139599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 50326 50802 . - 0 ID=Physo139599;Parent=Physo139599;rank=2 scaffold_76 . exon 50326 50802 . - . ID=Physo139599.2;Parent=Physo139599;constitutive=1;rank=2 scaffold_76 . CDS 51135 52700 . - 0 ID=Physo139599;Parent=Physo139599;rank=1 scaffold_76 . exon 51135 52700 . - . ID=Physo139599.1;Parent=Physo139599;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 53614 55899 . - . ID=Physo139600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760011;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 53614 55899 . - . ID=Physo139600;Parent=Physo139600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 53614 55899 . - 0 ID=Physo139600;Parent=Physo139600;rank=1 scaffold_76 . exon 53614 55899 . - . ID=Physo139600.1;Parent=Physo139600;constitutive=1;rank=1 scaffold_76 . repeat_region 59326 63169 . ? . description=dust scaffold_76 . repeat_region 65381 65397 . ? . description=dust scaffold_76 . biological_region 66823 66825 0.999 - . logic_name=eponine scaffold_76 . biological_region 66894 66897 0.999 - . logic_name=eponine scaffold_76 . biological_region 66952 66955 0.999 - . logic_name=eponine scaffold_76 . repeat_region 67097 67192 . ? . description=trf scaffold_76 . repeat_region 67138 67186 . ? . description=trf scaffold_76 . repeat_region 67768 67791 . ? . description=dust scaffold_76 . repeat_region 68218 71217 . - . description=Sola3-1_PS scaffold_76 . repeat_region 68633 68685 . ? . description=dust scaffold_76 . repeat_region 68638 68679 . ? . description=trf scaffold_76 ensembl protein_coding_gene 77599 78513 . - . ID=Physo109225;biotype=protein_coding;description=Glucanase inhibitor protein 1 [Source:UniProtKB/TrEMBL%3BAcc:Q945U0];external_name=estExt_fgenesh1_pm.C_760001;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 77599 78513 . - . ID=Physo109225;Parent=Physo109225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . exon 77599 78513 . - . ID=Physo109225.1;Parent=Physo109225;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_76 . CDS 77740 78513 . - 0 ID=Physo109225;Parent=Physo109225;rank=1 scaffold_76 ensembl protein_coding_gene 73147 74061 . - . ID=Physo139601;biotype=protein_coding;description=Glucanase inhibitor protein 1 [Source:UniProtKB/TrEMBL%3BAcc:Q945U0];external_name=estExt_fgenesh1_pg.C_760012;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 73147 74061 . - . ID=Physo139601;Parent=Physo139601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . exon 73147 74061 . - . ID=Physo139601.1;Parent=Physo139601;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_76 . CDS 73288 74061 . - 0 ID=Physo139601;Parent=Physo139601;rank=1 scaffold_76 . repeat_region 79478 79510 . ? . description=trf scaffold_76 . repeat_region 81124 81131 . ? . description=dust scaffold_76 . repeat_region 81244 81251 . ? . description=dust scaffold_76 . repeat_region 84608 84618 . ? . description=dust scaffold_76 . biological_region 85490 85490 0.999 - . logic_name=eponine scaffold_76 . biological_region 85505 85508 0.999 - . logic_name=eponine scaffold_76 . biological_region 87059 87061 0.999 - . logic_name=eponine scaffold_76 . biological_region 87166 87167 0.999 - . logic_name=eponine scaffold_76 . repeat_region 87621 87628 . ? . description=dust scaffold_76 ensembl protein_coding_gene 82950 83852 . - . ID=Physo139603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760014;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 82950 83852 . - . ID=Physo139603;Parent=Physo139603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 82950 83852 . - 0 ID=Physo139603;Parent=Physo139603;rank=1 scaffold_76 . exon 82950 83852 . - . ID=Physo139603.1;Parent=Physo139603;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 84027 84576 . - . ID=Physo139604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760015;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 84027 84576 . - . ID=Physo139604;Parent=Physo139604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 84027 84317 . - 0 ID=Physo139604;Parent=Physo139604;rank=2 scaffold_76 . exon 84027 84317 . - . ID=Physo139604.2;Parent=Physo139604;constitutive=1;rank=2 scaffold_76 . CDS 84436 84576 . - 0 ID=Physo139604;Parent=Physo139604;rank=1 scaffold_76 . exon 84436 84576 . - . ID=Physo139604.1;Parent=Physo139604;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 84936 87530 . + . ID=Physo139605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760016;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 84936 87530 . + . ID=Physo139605;Parent=Physo139605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 84936 87530 . + 0 ID=Physo139605;Parent=Physo139605;rank=1 scaffold_76 . exon 84936 87530 . + . ID=Physo139605.1;Parent=Physo139605;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 87642 88367 . - . ID=Physo139606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760017;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 87642 88367 . - . ID=Physo139606;Parent=Physo139606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 87642 88367 . - 0 ID=Physo139606;Parent=Physo139606;rank=1 scaffold_76 . exon 87642 88367 . - . ID=Physo139606.1;Parent=Physo139606;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 88833 92160 . - . ID=Physo139607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760018;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 88833 92160 . - . ID=Physo139607;Parent=Physo139607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 88833 89598 . - 0 ID=Physo139607;Parent=Physo139607;rank=2 scaffold_76 . exon 88833 89598 . - . ID=Physo139607.2;Parent=Physo139607;constitutive=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 89765 92160 . - 0 ID=Physo139607;Parent=Physo139607;rank=1 scaffold_76 . exon 89765 92160 . - . ID=Physo139607.1;Parent=Physo139607;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 96281 97288 . - . ID=Physo139608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760019;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 96281 97288 . - . ID=Physo139608;Parent=Physo139608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 96281 97288 . - 0 ID=Physo139608;Parent=Physo139608;rank=1 scaffold_76 . exon 96281 97288 . - . ID=Physo139608.1;Parent=Physo139608;constitutive=1;rank=1 scaffold_76 . repeat_region 102237 102589 . ? . description=dust scaffold_76 . biological_region 105764 105768 0.999 + . logic_name=eponine scaffold_76 . repeat_region 106305 106315 . ? . description=dust scaffold_76 . repeat_region 106600 106608 . ? . description=dust scaffold_76 . repeat_region 106727 106741 . ? . description=dust scaffold_76 . repeat_region 108050 108134 . ? . description=trf scaffold_76 . repeat_region 108116 108175 . ? . description=trf scaffold_76 . repeat_region 108146 108212 . ? . description=trf scaffold_76 ensembl protein_coding_gene 106798 109274 . - . ID=Physo139609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760020;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 106798 109274 . - . ID=Physo139609;Parent=Physo139609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 106798 107442 . - 0 ID=Physo139609;Parent=Physo139609;rank=4 scaffold_76 . exon 106798 107442 . - . ID=Physo139609.4;Parent=Physo139609;constitutive=1;rank=4 scaffold_76 . CDS 107579 107871 . - 0 ID=Physo139609;Parent=Physo139609;rank=3 scaffold_76 . exon 107579 107871 . - . ID=Physo139609.3;Parent=Physo139609;constitutive=1;ensembl_phase=1;rank=3 scaffold_76 . CDS 107983 108305 . - 0 ID=Physo139609;Parent=Physo139609;rank=2 scaffold_76 . exon 107983 108305 . - . ID=Physo139609.2;Parent=Physo139609;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 109171 109274 . - 0 ID=Physo139609;Parent=Physo139609;rank=1 scaffold_76 . exon 109171 109274 . - . ID=Physo139609.1;Parent=Physo139609;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 ensembl protein_coding_gene 112404 113588 . - . ID=Physo139610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760021;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 112404 113588 . - . ID=Physo139610;Parent=Physo139610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 112404 113588 . - 0 ID=Physo139610;Parent=Physo139610;rank=1 scaffold_76 . exon 112404 113588 . - . ID=Physo139610.1;Parent=Physo139610;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 113915 115488 . + . ID=Physo139611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760022;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 113915 115488 . + . ID=Physo139611;Parent=Physo139611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 113915 114115 . + 0 ID=Physo139611;Parent=Physo139611;rank=1 scaffold_76 . exon 113915 114115 . + . ID=Physo139611.1;Parent=Physo139611;constitutive=1;rank=1 scaffold_76 . CDS 114139 115488 . + 0 ID=Physo139611;Parent=Physo139611;rank=2 scaffold_76 . exon 114139 115488 . + . ID=Physo139611.2;Parent=Physo139611;constitutive=1;rank=2 scaffold_76 ensembl protein_coding_gene 115876 123428 . - . ID=Physo139612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760023;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 115876 123428 . - . ID=Physo139612;Parent=Physo139612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 115876 116343 . - 0 ID=Physo139612;Parent=Physo139612;rank=12 scaffold_76 . exon 115876 116343 . - . ID=Physo139612.12;Parent=Physo139612;constitutive=1;rank=12 scaffold_76 . CDS 116410 117004 . - 0 ID=Physo139612;Parent=Physo139612;rank=11 scaffold_76 . exon 116410 117004 . - . ID=Physo139612.11;Parent=Physo139612;constitutive=1;ensembl_phase=2;rank=11 scaffold_76 . CDS 117161 117625 . - 0 ID=Physo139612;Parent=Physo139612;rank=10 scaffold_76 . exon 117161 117625 . - . ID=Physo139612.10;Parent=Physo139612;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_76 . CDS 117967 118239 . - 0 ID=Physo139612;Parent=Physo139612;rank=9 scaffold_76 . exon 117967 118239 . - . ID=Physo139612.9;Parent=Physo139612;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_76 . CDS 118314 119678 . - 0 ID=Physo139612;Parent=Physo139612;rank=8 scaffold_76 . CDS 119986 120427 . - 0 ID=Physo139612;Parent=Physo139612;rank=7 scaffold_76 . CDS 120493 120547 . - 0 ID=Physo139612;Parent=Physo139612;rank=6 scaffold_76 . CDS 120601 120851 . - 0 ID=Physo139612;Parent=Physo139612;rank=5 scaffold_76 . CDS 120879 121599 . - 0 ID=Physo139612;Parent=Physo139612;rank=4 scaffold_76 . CDS 121778 121950 . - 0 ID=Physo139612;Parent=Physo139612;rank=3 scaffold_76 . CDS 122019 122478 . - 0 ID=Physo139612;Parent=Physo139612;rank=2 scaffold_76 . CDS 122619 123428 . - 0 ID=Physo139612;Parent=Physo139612;rank=1 scaffold_76 . biological_region 120104 120105 0.999 - . logic_name=eponine scaffold_76 . biological_region 120327 120327 0.999 - . logic_name=eponine scaffold_76 . biological_region 120567 120569 0.999 - . logic_name=eponine scaffold_76 . biological_region 120623 120626 0.999 + . logic_name=eponine scaffold_76 . biological_region 121248 121250 0.999 - . logic_name=eponine scaffold_76 . biological_region 121334 121338 0.999 + . logic_name=eponine scaffold_76 . repeat_region 122194 122214 . ? . description=dust scaffold_76 . repeat_region 122194 122214 . ? . description=trf scaffold_76 . biological_region 122887 122891 0.999 - . logic_name=eponine scaffold_76 . repeat_region 123547 123579 . ? . description=trf scaffold_76 . repeat_region 123578 123691 . ? . description=trf scaffold_76 . biological_region 124441 124445 0.999 - . logic_name=eponine scaffold_76 . biological_region 124686 124687 0.999 + . logic_name=eponine scaffold_76 . repeat_region 125246 125253 . ? . description=dust scaffold_76 . exon 118314 119678 . - . ID=Physo139612.8;Parent=Physo139612;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_76 . exon 119986 120427 . - . ID=Physo139612.7;Parent=Physo139612;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_76 . exon 120493 120547 . - . ID=Physo139612.6;Parent=Physo139612;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_76 . exon 120601 120851 . - . ID=Physo139612.5;Parent=Physo139612;constitutive=1;ensembl_phase=1;rank=5 scaffold_76 . exon 120879 121599 . - . ID=Physo139612.4;Parent=Physo139612;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_76 . exon 121778 121950 . - . ID=Physo139612.3;Parent=Physo139612;constitutive=1;ensembl_phase=1;rank=3 scaffold_76 . exon 122019 122478 . - . ID=Physo139612.2;Parent=Physo139612;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_76 . exon 122619 123428 . - . ID=Physo139612.1;Parent=Physo139612;constitutive=1;rank=1 scaffold_76 . repeat_region 131851 133120 . - . description=Sola3-1_PS scaffold_76 ensembl protein_coding_gene 134171 135757 . + . ID=Physo139613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760024;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 134171 135757 . + . ID=Physo139613;Parent=Physo139613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 134171 134539 . + 0 ID=Physo139613;Parent=Physo139613;rank=1 scaffold_76 . exon 134171 134539 . + . ID=Physo139613.1;Parent=Physo139613;constitutive=1;rank=1 scaffold_76 . CDS 134765 135757 . + 0 ID=Physo139613;Parent=Physo139613;rank=2 scaffold_76 . exon 134765 135757 . + . ID=Physo139613.2;Parent=Physo139613;constitutive=1;rank=2 scaffold_76 ensembl protein_coding_gene 137589 139175 . - . ID=Physo139614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760025;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 137589 139175 . - . ID=Physo139614;Parent=Physo139614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 137589 138581 . - 0 ID=Physo139614;Parent=Physo139614;rank=2 scaffold_76 . exon 137589 138581 . - . ID=Physo139614.2;Parent=Physo139614;constitutive=1;rank=2 scaffold_76 . CDS 138807 139175 . - 0 ID=Physo139614;Parent=Physo139614;rank=1 scaffold_76 . biological_region 138587 138592 0.999 + . logic_name=eponine scaffold_76 . repeat_region 139203 139212 . ? . description=dust scaffold_76 . repeat_region 139659 139669 . ? . description=dust scaffold_76 . repeat_region 140998 142035 . ? . description=dust scaffold_76 . repeat_region 144573 144676 . ? . description=trf scaffold_76 . biological_region 144891 144893 0.999 - . logic_name=eponine scaffold_76 . biological_region 146268 146268 0.999 + . logic_name=eponine scaffold_76 . biological_region 146349 146353 0.999 - . logic_name=eponine scaffold_76 . exon 138807 139175 . - . ID=Physo139614.1;Parent=Physo139614;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 143802 145151 . - . ID=Physo139615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760026;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 143802 145151 . - . ID=Physo139615;Parent=Physo139615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 143802 144179 . - 0 ID=Physo139615;Parent=Physo139615;rank=3 scaffold_76 . exon 143802 144179 . - . ID=Physo139615.3;Parent=Physo139615;constitutive=1;rank=3 scaffold_76 . CDS 144242 144345 . - 0 ID=Physo139615;Parent=Physo139615;rank=2 scaffold_76 . exon 144242 144345 . - . ID=Physo139615.2;Parent=Physo139615;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 144503 145151 . - 0 ID=Physo139615;Parent=Physo139615;rank=1 scaffold_76 . exon 144503 145151 . - . ID=Physo139615.1;Parent=Physo139615;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 146274 147195 . + . ID=Physo139616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760027;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 146274 147195 . + . ID=Physo139616;Parent=Physo139616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . exon 146274 146421 . + . ID=Physo139616.1;Parent=Physo139616;constitutive=1;ensembl_phase=-1;rank=1 scaffold_76 . CDS 146299 146421 . + 0 ID=Physo139616;Parent=Physo139616;rank=1 scaffold_76 . CDS 146506 146599 . + 0 ID=Physo139616;Parent=Physo139616;rank=2 scaffold_76 . exon 146506 146599 . + . ID=Physo139616.2;Parent=Physo139616;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_76 . CDS 146675 147195 . + 0 ID=Physo139616;Parent=Physo139616;rank=3 scaffold_76 . exon 146675 147195 . + . ID=Physo139616.3;Parent=Physo139616;constitutive=1;ensembl_phase=1;rank=3 scaffold_76 ensembl protein_coding_gene 150160 150888 . + . ID=Physo109226;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_760002;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 150160 150888 . + . ID=Physo109226;Parent=Physo109226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . exon 150160 150293 . + . ID=Physo109226.1;Parent=Physo109226;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_76 . CDS 150169 150293 . + 0 ID=Physo109226;Parent=Physo109226;rank=1 scaffold_76 . CDS 150461 150659 . + 0 ID=Physo109226;Parent=Physo109226;rank=2 scaffold_76 . exon 150461 150888 . + . ID=Physo109226.2;Parent=Physo109226;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_76 ensembl protein_coding_gene 147709 148812 . - . ID=Physo139617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760028;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 147709 148812 . - . ID=Physo139617;Parent=Physo139617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 147709 147948 . - 0 ID=Physo139617;Parent=Physo139617;rank=4 scaffold_76 . exon 147709 147948 . - . ID=Physo139617.4;Parent=Physo139617;constitutive=1;rank=4 scaffold_76 . CDS 148032 148126 . - 0 ID=Physo139617;Parent=Physo139617;rank=3 scaffold_76 . exon 148032 148126 . - . ID=Physo139617.3;Parent=Physo139617;constitutive=1;ensembl_phase=1;rank=3 scaffold_76 . CDS 148212 148578 . - 0 ID=Physo139617;Parent=Physo139617;rank=2 scaffold_76 . exon 148212 148578 . - . ID=Physo139617.2;Parent=Physo139617;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_76 . CDS 148683 148805 . - 0 ID=Physo139617;Parent=Physo139617;rank=1 scaffold_76 . exon 148683 148812 . - . ID=Physo139617.1;Parent=Physo139617;constitutive=1;ensembl_phase=-1;rank=1 scaffold_76 ensembl protein_coding_gene 157418 159439 . + . ID=Physo139619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760030;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 157418 159439 . + . ID=Physo139619;Parent=Physo139619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 157418 159439 . + 0 ID=Physo139619;Parent=Physo139619;rank=1 scaffold_76 . exon 157418 159439 . + . ID=Physo139619.1;Parent=Physo139619;constitutive=1;rank=1 scaffold_76 . biological_region 157604 157611 0.999 + . logic_name=eponine scaffold_76 . biological_region 157656 157658 0.999 + . logic_name=eponine scaffold_76 . repeat_region 157848 157886 . ? . description=trf scaffold_76 . repeat_region 157851 157901 . ? . description=dust scaffold_76 . biological_region 158428 158435 0.999 + . logic_name=eponine scaffold_76 . biological_region 158438 158442 0.999 - . logic_name=eponine scaffold_76 . repeat_region 159257 159299 . ? . description=trf scaffold_76 . biological_region 159832 159837 0.999 + . logic_name=eponine scaffold_76 . biological_region 160237 160242 0.999 + . logic_name=eponine scaffold_76 . biological_region 160261 160261 0.999 + . logic_name=eponine scaffold_76 . biological_region 160358 160363 0.999 - . logic_name=eponine scaffold_76 . biological_region 160470 160470 0.999 + . logic_name=eponine scaffold_76 . biological_region 160707 160710 0.999 + . logic_name=eponine scaffold_76 . biological_region 160786 160790 0.999 + . logic_name=eponine scaffold_76 . biological_region 160801 160805 0.999 + . logic_name=eponine scaffold_76 . repeat_region 160812 160837 . ? . description=trf scaffold_76 . biological_region 160818 160825 0.999 + . logic_name=eponine scaffold_76 . biological_region 161597 161601 0.999 - . logic_name=eponine scaffold_76 . biological_region 161886 161888 0.999 + . logic_name=eponine scaffold_76 . biological_region 161998 161999 0.999 + . logic_name=eponine scaffold_76 . biological_region 162009 162012 0.999 - . logic_name=eponine scaffold_76 . biological_region 162536 162539 0.999 - . logic_name=eponine scaffold_76 . biological_region 164934 164935 0.999 + . logic_name=eponine scaffold_76 . biological_region 164959 164961 0.999 - . logic_name=eponine scaffold_76 . biological_region 164962 164969 0.999 + . logic_name=eponine scaffold_76 . biological_region 164978 164979 0.999 - . logic_name=eponine scaffold_76 . biological_region 164997 165004 0.999 - . logic_name=eponine scaffold_76 . biological_region 165015 165018 0.999 + . logic_name=eponine scaffold_76 . repeat_region 165168 165203 . ? . description=trf scaffold_76 . biological_region 165974 165981 0.999 + . logic_name=eponine scaffold_76 . biological_region 166049 166055 0.999 - . logic_name=eponine scaffold_76 . biological_region 166074 166076 0.999 - . logic_name=eponine scaffold_76 . biological_region 166096 166100 0.999 - . logic_name=eponine scaffold_76 . repeat_region 166777 166833 . ? . description=trf scaffold_76 ensembl protein_coding_gene 159821 160996 . - . ID=Physo139620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760031;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 159821 160996 . - . ID=Physo139620;Parent=Physo139620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 159821 160996 . - 0 ID=Physo139620;Parent=Physo139620;rank=1 scaffold_76 . exon 159821 160996 . - . ID=Physo139620.1;Parent=Physo139620;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 161749 165426 . - . ID=Physo139621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760032;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 161749 165426 . - . ID=Physo139621;Parent=Physo139621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 161749 165426 . - 0 ID=Physo139621;Parent=Physo139621;rank=1 scaffold_76 . exon 161749 165426 . - . ID=Physo139621.1;Parent=Physo139621;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 165964 166349 . + . ID=Physo158017;biotype=protein_coding;external_name=C_scaffold_76000009;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 165964 166349 . + . ID=Physo158017;Parent=Physo158017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 165964 166041 . + 0 ID=Physo158017;Parent=Physo158017;rank=1 scaffold_76 . exon 165964 166041 . + . ID=Physo158017.1;Parent=Physo158017;constitutive=1;rank=1 scaffold_76 . CDS 166197 166349 . + 0 ID=Physo158017;Parent=Physo158017;rank=2 scaffold_76 . exon 166197 166349 . + . ID=Physo158017.2;Parent=Physo158017;constitutive=1;rank=2 scaffold_76 ensembl protein_coding_gene 166773 172716 . - . ID=Physo158018;biotype=protein_coding;external_name=C_scaffold_76000010;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 166773 172716 . - . ID=Physo158018;Parent=Physo158018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 166773 167294 . - 0 ID=Physo158018;Parent=Physo158018;rank=13 scaffold_76 . exon 166773 167294 . - . ID=Physo158018.13;Parent=Physo158018;constitutive=1;rank=13 scaffold_76 . CDS 167365 167448 . - 0 ID=Physo158018;Parent=Physo158018;rank=12 scaffold_76 . CDS 167527 167688 . - 0 ID=Physo158018;Parent=Physo158018;rank=11 scaffold_76 . CDS 167936 168221 . - 0 ID=Physo158018;Parent=Physo158018;rank=10 scaffold_76 . CDS 168246 168562 . - 0 ID=Physo158018;Parent=Physo158018;rank=9 scaffold_76 . CDS 168627 168743 . - 0 ID=Physo158018;Parent=Physo158018;rank=8 scaffold_76 . CDS 168850 168948 . - 0 ID=Physo158018;Parent=Physo158018;rank=7 scaffold_76 . CDS 169022 169112 . - 0 ID=Physo158018;Parent=Physo158018;rank=6 scaffold_76 . CDS 169176 169409 . - 0 ID=Physo158018;Parent=Physo158018;rank=5 scaffold_76 . CDS 169780 170128 . - 0 ID=Physo158018;Parent=Physo158018;rank=4 scaffold_76 . CDS 170216 170518 . - 0 ID=Physo158018;Parent=Physo158018;rank=3 scaffold_76 . CDS 170736 171187 . - 0 ID=Physo158018;Parent=Physo158018;rank=2 scaffold_76 . CDS 171275 172716 . - 0 ID=Physo158018;Parent=Physo158018;rank=1 scaffold_76 . repeat_region 171346 171450 . + . description=(CTG)n scaffold_76 . repeat_region 172360 172489 . + . description=(CTG)n scaffold_76 ensembl protein_coding_gene 175349 176148 . + . ID=Physo139623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760034;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 175349 176148 . + . ID=Physo139623;Parent=Physo139623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 175349 175885 . + 0 ID=Physo139623;Parent=Physo139623;rank=1 scaffold_76 . exon 175349 175885 . + . ID=Physo139623.1;Parent=Physo139623;constitutive=1;rank=1 scaffold_76 . CDS 175981 176148 . + 0 ID=Physo139623;Parent=Physo139623;rank=2 scaffold_76 . exon 175981 176148 . + . ID=Physo139623.2;Parent=Physo139623;constitutive=1;rank=2 scaffold_76 . exon 167365 167448 . - . ID=Physo158018.12;Parent=Physo158018;constitutive=1;rank=12 scaffold_76 . exon 167527 167688 . - . ID=Physo158018.11;Parent=Physo158018;constitutive=1;rank=11 scaffold_76 . exon 167936 168221 . - . ID=Physo158018.10;Parent=Physo158018;constitutive=1;ensembl_phase=2;rank=10 scaffold_76 . exon 168246 168562 . - . ID=Physo158018.9;Parent=Physo158018;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_76 . exon 168627 168743 . - . ID=Physo158018.8;Parent=Physo158018;constitutive=1;rank=8 scaffold_76 . exon 168850 168948 . - . ID=Physo158018.7;Parent=Physo158018;constitutive=1;rank=7 scaffold_76 . exon 169022 169112 . - . ID=Physo158018.6;Parent=Physo158018;constitutive=1;ensembl_phase=2;rank=6 scaffold_76 . exon 169176 169409 . - . ID=Physo158018.5;Parent=Physo158018;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_76 . exon 169780 170128 . - . ID=Physo158018.4;Parent=Physo158018;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_76 . exon 170216 170518 . - . ID=Physo158018.3;Parent=Physo158018;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_76 . exon 170736 171187 . - . ID=Physo158018.2;Parent=Physo158018;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_76 . exon 171275 172716 . - . ID=Physo158018.1;Parent=Physo158018;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 . biological_region 178558 178559 0.999 - . logic_name=eponine scaffold_76 . biological_region 178608 178612 0.999 - . logic_name=eponine scaffold_76 . biological_region 178671 178675 0.999 - . logic_name=eponine scaffold_76 . biological_region 178711 178713 0.999 + . logic_name=eponine scaffold_76 . biological_region 179121 179127 0.999 + . logic_name=eponine scaffold_76 . biological_region 179169 179170 0.999 - . logic_name=eponine scaffold_76 . biological_region 179185 179191 0.999 + . logic_name=eponine scaffold_76 . biological_region 179317 179326 0.999 - . logic_name=eponine scaffold_76 . biological_region 179330 179334 0.999 + . logic_name=eponine scaffold_76 . repeat_region 180888 180896 . ? . description=dust scaffold_76 . repeat_region 181297 181310 . ? . description=dust scaffold_76 . biological_region 181511 181511 0.999 + . logic_name=eponine scaffold_76 . biological_region 182315 182316 0.999 - . logic_name=eponine scaffold_76 . biological_region 183567 183568 0.999 - . logic_name=eponine scaffold_76 . biological_region 183592 183592 0.999 - . logic_name=eponine scaffold_76 . biological_region 183622 183624 0.999 - . logic_name=eponine scaffold_76 . repeat_region 183826 183868 . ? . description=trf scaffold_76 ensembl protein_coding_gene 178849 180901 . + . ID=Physo139624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760035;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 178849 180901 . + . ID=Physo139624;Parent=Physo139624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . exon 178849 180901 . + . ID=Physo139624.1;Parent=Physo139624;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_76 . CDS 178890 180878 . + 0 ID=Physo139624;Parent=Physo139624;rank=1 scaffold_76 ensembl protein_coding_gene 181340 181746 . - . ID=Physo139625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760036;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 181340 181746 . - . ID=Physo139625;Parent=Physo139625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 181340 181744 . - 0 ID=Physo139625;Parent=Physo139625;rank=1 scaffold_76 . exon 181340 181746 . - . ID=Physo139625.1;Parent=Physo139625;constitutive=1;ensembl_phase=-1;rank=1 scaffold_76 ensembl protein_coding_gene 183527 184102 . + . ID=Physo158019;biotype=protein_coding;external_name=C_scaffold_76000011;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 183527 184102 . + . ID=Physo158019;Parent=Physo158019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 183527 184102 . + 0 ID=Physo158019;Parent=Physo158019;rank=1 scaffold_76 . exon 183527 184102 . + . ID=Physo158019.1;Parent=Physo158019;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 185525 187719 . + . ID=Physo158020;biotype=protein_coding;external_name=C_scaffold_76000012;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 185525 187719 . + . ID=Physo158020;Parent=Physo158020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 185525 185998 . + 0 ID=Physo158020;Parent=Physo158020;rank=1 scaffold_76 . exon 185525 185998 . + . ID=Physo158020.1;Parent=Physo158020;constitutive=1;rank=1 scaffold_76 . CDS 186020 186660 . + 0 ID=Physo158020;Parent=Physo158020;rank=2 scaffold_76 . exon 186020 186660 . + . ID=Physo158020.2;Parent=Physo158020;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_76 . CDS 186937 187409 . + 0 ID=Physo158020;Parent=Physo158020;rank=3 scaffold_76 . exon 186937 187409 . + . ID=Physo158020.3;Parent=Physo158020;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_76 . CDS 187595 187719 . + 0 ID=Physo158020;Parent=Physo158020;rank=4 scaffold_76 ensembl protein_coding_gene 188734 189849 . - . ID=Physo139628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760039;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 188734 189849 . - . ID=Physo139628;Parent=Physo139628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 188734 189849 . - 0 ID=Physo139628;Parent=Physo139628;rank=1 scaffold_76 . exon 188734 189849 . - . ID=Physo139628.1;Parent=Physo139628;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 191995 193419 . + . ID=Physo139629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760040;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 191995 193419 . + . ID=Physo139629;Parent=Physo139629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 191995 193419 . + 0 ID=Physo139629;Parent=Physo139629;rank=1 scaffold_76 . exon 191995 193419 . + . ID=Physo139629.1;Parent=Physo139629;constitutive=1;rank=1 scaffold_76 . exon 187595 187719 . + . ID=Physo158020.4;Parent=Physo158020;constitutive=1;ensembl_phase=1;rank=4 scaffold_76 . repeat_region 197541 197548 . ? . description=dust scaffold_76 . biological_region 203519 203524 0.999 + . logic_name=eponine scaffold_76 . biological_region 203927 203931 0.999 - . logic_name=eponine scaffold_76 . repeat_region 204989 205000 . ? . description=dust scaffold_76 . repeat_region 205156 205182 . ? . description=dust scaffold_76 . repeat_region 205156 205182 . ? . description=trf scaffold_76 . biological_region 206407 206413 0.999 + . logic_name=eponine scaffold_76 ensembl protein_coding_gene 201344 202216 . + . ID=Physo139631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760042;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 201344 202216 . + . ID=Physo139631;Parent=Physo139631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 201344 202216 . + 0 ID=Physo139631;Parent=Physo139631;rank=1 scaffold_76 . exon 201344 202216 . + . ID=Physo139631.1;Parent=Physo139631;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 202398 203254 . - . ID=Physo139632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760043;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 202398 203254 . - . ID=Physo139632;Parent=Physo139632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 202398 203243 . - 0 ID=Physo139632;Parent=Physo139632;rank=1 scaffold_76 . exon 202398 203254 . - . ID=Physo139632.1;Parent=Physo139632;constitutive=1;ensembl_phase=-1;rank=1 scaffold_76 ensembl protein_coding_gene 203430 204206 . - . ID=Physo139633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760044;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 203430 204206 . - . ID=Physo139633;Parent=Physo139633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 203430 204206 . - 0 ID=Physo139633;Parent=Physo139633;rank=1 scaffold_76 . exon 203430 204206 . - . ID=Physo139633.1;Parent=Physo139633;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 206132 206858 . + . ID=Physo139634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760045;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 206132 206858 . + . ID=Physo139634;Parent=Physo139634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 206132 206361 . + 0 ID=Physo139634;Parent=Physo139634;rank=1 scaffold_76 . exon 206132 206361 . + . ID=Physo139634.1;Parent=Physo139634;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 . CDS 206615 206858 . + 0 ID=Physo139634;Parent=Physo139634;rank=2 scaffold_76 . exon 206615 206858 . + . ID=Physo139634.2;Parent=Physo139634;constitutive=1;ensembl_phase=2;rank=2 scaffold_76 ensembl protein_coding_gene 200368 200955 . - . ID=Physo158022;biotype=protein_coding;external_name=C_scaffold_76000014;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 200368 200955 . - . ID=Physo158022;Parent=Physo158022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 200368 200955 . - 0 ID=Physo158022;Parent=Physo158022;rank=1 scaffold_76 . exon 200368 200955 . - . ID=Physo158022.1;Parent=Physo158022;constitutive=1;rank=1 scaffold_76 . repeat_region 207333 207423 . - . description=Gypsy-2-LTR_PI scaffold_76 . repeat_region 207505 213568 . - . description=Gypsy-2-I_PI-int scaffold_76 ensembl protein_coding_gene 207698 209038 . + . ID=Physo139635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760046;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 207698 209038 . + . ID=Physo139635;Parent=Physo139635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 207698 209038 . + 0 ID=Physo139635;Parent=Physo139635;rank=1 scaffold_76 . exon 207698 209038 . + . ID=Physo139635.1;Parent=Physo139635;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 209219 213117 . - . ID=Physo139636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760047;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 209219 213117 . - . ID=Physo139636;Parent=Physo139636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 209219 210767 . - 0 ID=Physo139636;Parent=Physo139636;rank=3 scaffold_76 . exon 209219 210767 . - . ID=Physo139636.3;Parent=Physo139636;constitutive=1;ensembl_phase=2;rank=3 scaffold_76 . CDS 210839 212783 . - 0 ID=Physo139636;Parent=Physo139636;rank=2 scaffold_76 . exon 210839 212783 . - . ID=Physo139636.2;Parent=Physo139636;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_76 . CDS 212928 213117 . - 0 ID=Physo139636;Parent=Physo139636;rank=1 scaffold_76 . exon 212928 213117 . - . ID=Physo139636.1;Parent=Physo139636;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . repeat_region 213571 224992 . ? . description=dust scaffold_76 . repeat_region 224993 229149 . ? . description=dust scaffold_76 . biological_region 229916 229922 0.999 + . logic_name=eponine scaffold_76 . biological_region 230012 230015 0.999 - . logic_name=eponine scaffold_76 . biological_region 230575 230576 0.999 - . logic_name=eponine scaffold_76 . biological_region 231890 231892 0.999 - . logic_name=eponine scaffold_76 ensembl protein_coding_gene 229815 231043 . - . ID=Physo139637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760048;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 229815 231043 . - . ID=Physo139637;Parent=Physo139637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 229815 230741 . - 0 ID=Physo139637;Parent=Physo139637;rank=3 scaffold_76 . exon 229815 230741 . - . ID=Physo139637.3;Parent=Physo139637;constitutive=1;rank=3 scaffold_76 . CDS 230827 230961 . - 0 ID=Physo139637;Parent=Physo139637;rank=2 scaffold_76 . exon 230827 230961 . - . ID=Physo139637.2;Parent=Physo139637;constitutive=1;rank=2 scaffold_76 . CDS 231041 231043 . - 0 ID=Physo139637;Parent=Physo139637;rank=1 scaffold_76 . exon 231041 231043 . - . ID=Physo139637.1;Parent=Physo139637;constitutive=1;rank=1 scaffold_76 . repeat_region 239370 239413 . ? . description=trf scaffold_76 . repeat_region 240566 240594 . ? . description=trf scaffold_76 . repeat_region 240569 240617 . ? . description=trf scaffold_76 . repeat_region 240951 240993 . ? . description=trf scaffold_76 . repeat_region 244324 247546 . ? . description=dust scaffold_76 ensembl protein_coding_gene 239454 240245 . + . ID=Physo139638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760049;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 239454 240245 . + . ID=Physo139638;Parent=Physo139638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 239454 240245 . + 0 ID=Physo139638;Parent=Physo139638;rank=1 scaffold_76 . exon 239454 240245 . + . ID=Physo139638.1;Parent=Physo139638;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 252096 252798 . - . ID=Physo139639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760050;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 252096 252798 . - . ID=Physo139639;Parent=Physo139639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 252096 252176 . - 0 ID=Physo139639;Parent=Physo139639;rank=5 scaffold_76 . exon 252096 252176 . - . ID=Physo139639.5;Parent=Physo139639;constitutive=1;rank=5 scaffold_76 . CDS 252225 252312 . - 0 ID=Physo139639;Parent=Physo139639;rank=4 scaffold_76 . exon 252225 252312 . - . ID=Physo139639.4;Parent=Physo139639;constitutive=1;ensembl_phase=2;rank=4 scaffold_76 . CDS 252354 252444 . - 0 ID=Physo139639;Parent=Physo139639;rank=3 scaffold_76 . exon 252354 252444 . - . ID=Physo139639.3;Parent=Physo139639;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_76 . CDS 252474 252709 . - 0 ID=Physo139639;Parent=Physo139639;rank=2 scaffold_76 . exon 252474 252709 . - . ID=Physo139639.2;Parent=Physo139639;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_76 . CDS 252770 252798 . - 0 ID=Physo139639;Parent=Physo139639;rank=1 scaffold_76 . exon 252770 252798 . - . ID=Physo139639.1;Parent=Physo139639;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_76 . biological_region 256898 256898 0.999 - . logic_name=eponine scaffold_76 . biological_region 256909 256913 0.999 + . logic_name=eponine scaffold_76 . biological_region 256927 256935 0.999 + . logic_name=eponine scaffold_76 . biological_region 257123 257123 0.999 + . logic_name=eponine scaffold_76 . biological_region 258011 258011 0.999 + . logic_name=eponine scaffold_76 . biological_region 262563 262566 0.999 + . logic_name=eponine scaffold_76 . biological_region 262592 262596 0.999 - . logic_name=eponine scaffold_76 . biological_region 262791 262794 0.999 - . logic_name=eponine scaffold_76 . repeat_region 264967 264984 . ? . description=dust scaffold_76 . repeat_region 265185 265222 . ? . description=trf scaffold_76 . repeat_region 265382 265426 . ? . description=trf scaffold_76 . repeat_region 265752 265761 . ? . description=dust scaffold_76 ensembl protein_coding_gene 256426 257414 . - . ID=Physo139640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760051;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 256426 257414 . - . ID=Physo139640;Parent=Physo139640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 256426 257241 . - 0 ID=Physo139640;Parent=Physo139640;rank=2 scaffold_76 . exon 256426 257241 . - . ID=Physo139640.2;Parent=Physo139640;constitutive=1;rank=2 scaffold_76 . CDS 257361 257414 . - 0 ID=Physo139640;Parent=Physo139640;rank=1 scaffold_76 . exon 257361 257414 . - . ID=Physo139640.1;Parent=Physo139640;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 257865 263461 . + . ID=Physo139641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760052;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 257865 263461 . + . ID=Physo139641;Parent=Physo139641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 257865 258119 . + 0 ID=Physo139641;Parent=Physo139641;rank=1 scaffold_76 . exon 257865 258119 . + . ID=Physo139641.1;Parent=Physo139641;constitutive=1;rank=1 scaffold_76 . CDS 258149 258649 . + 0 ID=Physo139641;Parent=Physo139641;rank=2 scaffold_76 . exon 258149 258649 . + . ID=Physo139641.2;Parent=Physo139641;constitutive=1;rank=2 scaffold_76 . CDS 258777 259768 . + 0 ID=Physo139641;Parent=Physo139641;rank=3 scaffold_76 . exon 258777 259768 . + . ID=Physo139641.3;Parent=Physo139641;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_76 . CDS 259876 261435 . + 0 ID=Physo139641;Parent=Physo139641;rank=4 scaffold_76 . exon 259876 261435 . + . ID=Physo139641.4;Parent=Physo139641;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_76 . CDS 261472 263461 . + 0 ID=Physo139641;Parent=Physo139641;rank=5 scaffold_76 . exon 261472 263461 . + . ID=Physo139641.5;Parent=Physo139641;constitutive=1;ensembl_phase=2;rank=5 scaffold_76 ensembl protein_coding_gene 263998 264933 . - . ID=Physo139642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760053;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 263998 264933 . - . ID=Physo139642;Parent=Physo139642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 263998 264933 . - 0 ID=Physo139642;Parent=Physo139642;rank=1 scaffold_76 . exon 263998 264933 . - . ID=Physo139642.1;Parent=Physo139642;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 273253 274191 . + . ID=Physo139643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760054;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 273253 274191 . + . ID=Physo139643;Parent=Physo139643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . exon 273253 273428 . + . ID=Physo139643.1;Parent=Physo139643;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_76 . exon 273508 273573 . + . ID=Physo139643.2;Parent=Physo139643;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_76 . exon 273665 274191 . + . ID=Physo139643.3;Parent=Physo139643;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_76 . CDS 273678 274055 . + 0 ID=Physo139643;Parent=Physo139643;rank=1 scaffold_76 . repeat_region 277360 277395 . ? . description=trf scaffold_76 . repeat_region 279837 279877 . ? . description=dust scaffold_76 . repeat_region 279837 279877 . ? . description=trf scaffold_76 . repeat_region 280392 281240 . ? . description=dust scaffold_76 . repeat_region 281241 282540 . ? . description=dust scaffold_76 ensembl protein_coding_gene 277823 278453 . - . ID=Physo139644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760055;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 277823 278453 . - . ID=Physo139644;Parent=Physo139644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 277823 278190 . - 0 ID=Physo139644;Parent=Physo139644;rank=2 scaffold_76 . exon 277823 278190 . - . ID=Physo139644.2;Parent=Physo139644;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 278438 278453 . - 0 ID=Physo139644;Parent=Physo139644;rank=1 scaffold_76 . exon 278438 278453 . - . ID=Physo139644.1;Parent=Physo139644;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 287113 288090 . + . ID=Physo139645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760056;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 287113 288090 . + . ID=Physo139645;Parent=Physo139645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 287113 287199 . + 0 ID=Physo139645;Parent=Physo139645;rank=1 scaffold_76 . exon 287113 287199 . + . ID=Physo139645.1;Parent=Physo139645;constitutive=1;rank=1 scaffold_76 . CDS 287293 288090 . + 0 ID=Physo139645;Parent=Physo139645;rank=2 scaffold_76 . exon 287293 288090 . + . ID=Physo139645.2;Parent=Physo139645;constitutive=1;rank=2 scaffold_76 ensembl protein_coding_gene 294917 295725 . + . ID=Physo139646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760057;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 294917 295725 . + . ID=Physo139646;Parent=Physo139646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 294917 295396 . + 0 ID=Physo139646;Parent=Physo139646;rank=1 scaffold_76 . exon 294917 295396 . + . ID=Physo139646.1;Parent=Physo139646;constitutive=1;rank=1 scaffold_76 . CDS 295426 295725 . + 0 ID=Physo139646;Parent=Physo139646;rank=2 scaffold_76 . repeat_region 296737 296745 . ? . description=dust scaffold_76 . biological_region 304402 304403 0.999 + . logic_name=eponine scaffold_76 . biological_region 304426 304431 0.999 - . logic_name=eponine scaffold_76 . biological_region 304440 304441 0.999 + . logic_name=eponine scaffold_76 . biological_region 304493 304498 0.999 - . logic_name=eponine scaffold_76 . exon 295426 295725 . + . ID=Physo139646.2;Parent=Physo139646;constitutive=1;rank=2 scaffold_76 . repeat_region 305907 306037 . ? . description=trf scaffold_76 . repeat_region 306026 306071 . ? . description=trf scaffold_76 . repeat_region 309069 309162 . ? . description=trf scaffold_76 . repeat_region 309757 310004 . - . description=GypsyPi-1c_I-int scaffold_76 . repeat_region 310207 312579 . - . description=GypsyPi-1c_I-int scaffold_76 . repeat_region 313096 313127 . ? . description=trf scaffold_76 . repeat_region 313151 313231 . ? . description=trf scaffold_76 . repeat_region 313271 313450 . ? . description=trf scaffold_76 . repeat_region 313271 313450 . ? . description=trf scaffold_76 ensembl protein_coding_gene 306143 306839 . + . ID=Physo139647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760058;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 306143 306839 . + . ID=Physo139647;Parent=Physo139647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 306143 306230 . + 0 ID=Physo139647;Parent=Physo139647;rank=1 scaffold_76 . exon 306143 306230 . + . ID=Physo139647.1;Parent=Physo139647;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 306327 306339 . + 0 ID=Physo139647;Parent=Physo139647;rank=2 scaffold_76 . exon 306327 306339 . + . ID=Physo139647.2;Parent=Physo139647;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_76 . CDS 306401 306839 . + 0 ID=Physo139647;Parent=Physo139647;rank=3 scaffold_76 . exon 306401 306839 . + . ID=Physo139647.3;Parent=Physo139647;constitutive=1;ensembl_phase=2;rank=3 scaffold_76 ensembl protein_coding_gene 308461 309767 . + . ID=Physo139648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760059;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 308461 309767 . + . ID=Physo139648;Parent=Physo139648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 308461 308529 . + 0 ID=Physo139648;Parent=Physo139648;rank=1 scaffold_76 . exon 308461 308529 . + . ID=Physo139648.1;Parent=Physo139648;constitutive=1;rank=1 scaffold_76 . CDS 308562 308879 . + 0 ID=Physo139648;Parent=Physo139648;rank=2 scaffold_76 . exon 308562 308879 . + . ID=Physo139648.2;Parent=Physo139648;constitutive=1;rank=2 scaffold_76 . CDS 309252 309767 . + 0 ID=Physo139648;Parent=Physo139648;rank=3 scaffold_76 . exon 309252 309767 . + . ID=Physo139648.3;Parent=Physo139648;constitutive=1;rank=3 scaffold_76 ensembl protein_coding_gene 310003 314820 . - . ID=Physo139649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760060;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 310003 314820 . - . ID=Physo139649;Parent=Physo139649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 310003 310452 . - 0 ID=Physo139649;Parent=Physo139649;rank=8 scaffold_76 . exon 310003 310452 . - . ID=Physo139649.8;Parent=Physo139649;constitutive=1;rank=8 scaffold_76 . CDS 310527 310751 . - 0 ID=Physo139649;Parent=Physo139649;rank=7 scaffold_76 . exon 310527 310751 . - . ID=Physo139649.7;Parent=Physo139649;constitutive=1;rank=7 scaffold_76 . CDS 310780 311331 . - 0 ID=Physo139649;Parent=Physo139649;rank=6 scaffold_76 . exon 310780 311331 . - . ID=Physo139649.6;Parent=Physo139649;constitutive=1;rank=6 scaffold_76 . CDS 311383 311595 . - 0 ID=Physo139649;Parent=Physo139649;rank=5 scaffold_76 . exon 311383 311595 . - . ID=Physo139649.5;Parent=Physo139649;constitutive=1;rank=5 scaffold_76 . CDS 311640 312429 . - 0 ID=Physo139649;Parent=Physo139649;rank=4 scaffold_76 . exon 311640 312429 . - . ID=Physo139649.4;Parent=Physo139649;constitutive=1;ensembl_phase=2;rank=4 scaffold_76 . CDS 312578 313019 . - 0 ID=Physo139649;Parent=Physo139649;rank=3 scaffold_76 . exon 312578 313019 . - . ID=Physo139649.3;Parent=Physo139649;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_76 . CDS 313040 313966 . - 0 ID=Physo139649;Parent=Physo139649;rank=2 scaffold_76 . exon 313040 313966 . - . ID=Physo139649.2;Parent=Physo139649;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 314295 314820 . - 0 ID=Physo139649;Parent=Physo139649;rank=1 scaffold_76 . exon 314295 314820 . - . ID=Physo139649.1;Parent=Physo139649;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . repeat_region 318783 318796 . ? . description=dust scaffold_76 . repeat_region 319589 319600 . ? . description=dust scaffold_76 ensembl protein_coding_gene 316372 316983 . - . ID=Physo120341;biotype=protein_coding;external_name=estExt_Genewise1.C_760005;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 316372 316983 . - . ID=Physo120341;Parent=Physo120341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . exon 316372 316567 . - . ID=Physo120341.2;Parent=Physo120341;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_76 . exon 316619 316983 . - . ID=Physo120341.1;Parent=Physo120341;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_76 . CDS 316821 316973 . - 0 ID=Physo120341;Parent=Physo120341;rank=1 scaffold_76 ensembl protein_coding_gene 319994 320482 . + . ID=Physo139650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760061;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 319994 320482 . + . ID=Physo139650;Parent=Physo139650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 319994 320482 . + 0 ID=Physo139650;Parent=Physo139650;rank=1 scaffold_76 . exon 319994 320482 . + . ID=Physo139650.1;Parent=Physo139650;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 321975 323821 . + . ID=Physo139651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760062;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 321975 323821 . + . ID=Physo139651;Parent=Physo139651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 321975 322110 . + 0 ID=Physo139651;Parent=Physo139651;rank=1 scaffold_76 . exon 321975 322110 . + . ID=Physo139651.1;Parent=Physo139651;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 322139 322623 . + 0 ID=Physo139651;Parent=Physo139651;rank=2 scaffold_76 . exon 322139 322623 . + . ID=Physo139651.2;Parent=Physo139651;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 322663 323607 . + 0 ID=Physo139651;Parent=Physo139651;rank=3 scaffold_76 . exon 322663 323607 . + . ID=Physo139651.3;Parent=Physo139651;constitutive=1;rank=3 scaffold_76 . CDS 323648 323821 . + 0 ID=Physo139651;Parent=Physo139651;rank=4 scaffold_76 . exon 323648 323821 . + . ID=Physo139651.4;Parent=Physo139651;constitutive=1;rank=4 scaffold_76 . biological_region 331798 331801 0.999 - . logic_name=eponine scaffold_76 . biological_region 331855 331855 0.999 + . logic_name=eponine scaffold_76 . biological_region 333560 333561 0.999 + . logic_name=eponine scaffold_76 . repeat_region 334048 334076 . ? . description=trf scaffold_76 . repeat_region 334820 334827 . ? . description=dust scaffold_76 . repeat_region 336444 336454 . ? . description=dust scaffold_76 . repeat_region 336471 336488 . ? . description=dust scaffold_76 . repeat_region 338482 338496 . ? . description=dust scaffold_76 ensembl protein_coding_gene 335494 336346 . + . ID=Physo139652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760063;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 335494 336346 . + . ID=Physo139652;Parent=Physo139652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 335494 335566 . + 0 ID=Physo139652;Parent=Physo139652;rank=1 scaffold_76 . exon 335494 335566 . + . ID=Physo139652.1;Parent=Physo139652;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 335691 336346 . + 0 ID=Physo139652;Parent=Physo139652;rank=2 scaffold_76 . exon 335691 336346 . + . ID=Physo139652.2;Parent=Physo139652;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 ensembl protein_coding_gene 344480 350096 . + . ID=Physo139653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760064;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 344480 350096 . + . ID=Physo139653;Parent=Physo139653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 344480 344549 . + 0 ID=Physo139653;Parent=Physo139653;rank=1 scaffold_76 . exon 344480 344549 . + . ID=Physo139653.1;Parent=Physo139653;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . CDS 344693 344962 . + 0 ID=Physo139653;Parent=Physo139653;rank=2 scaffold_76 . CDS 345313 345434 . + 0 ID=Physo139653;Parent=Physo139653;rank=3 scaffold_76 . CDS 345582 347306 . + 0 ID=Physo139653;Parent=Physo139653;rank=4 scaffold_76 . CDS 347356 348678 . + 0 ID=Physo139653;Parent=Physo139653;rank=5 scaffold_76 . CDS 348736 348834 . + 0 ID=Physo139653;Parent=Physo139653;rank=6 scaffold_76 . CDS 349152 349442 . + 0 ID=Physo139653;Parent=Physo139653;rank=7 scaffold_76 . CDS 349492 350035 . + 0 ID=Physo139653;Parent=Physo139653;rank=8 scaffold_76 . CDS 350077 350096 . + 0 ID=Physo139653;Parent=Physo139653;rank=9 scaffold_76 . biological_region 345854 345857 0.999 + . logic_name=eponine scaffold_76 . biological_region 346214 346216 0.999 + . logic_name=eponine scaffold_76 . biological_region 346283 346286 0.999 + . logic_name=eponine scaffold_76 . biological_region 346311 346311 0.999 - . logic_name=eponine scaffold_76 . repeat_region 346883 348962 . + . description=GypsyPi-1c_I-int scaffold_76 . repeat_region 349107 350132 . + . description=GypsyPi-1c_I-int scaffold_76 . biological_region 350949 350955 0.999 + . logic_name=eponine scaffold_76 . biological_region 350978 350979 0.999 + . logic_name=eponine scaffold_76 . biological_region 351049 351051 0.999 - . logic_name=eponine scaffold_76 . biological_region 351066 351072 0.999 - . logic_name=eponine scaffold_76 . exon 344693 344962 . + . ID=Physo139653.2;Parent=Physo139653;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_76 . exon 345313 345434 . + . ID=Physo139653.3;Parent=Physo139653;constitutive=1;ensembl_phase=1;rank=3 scaffold_76 . exon 345582 347306 . + . ID=Physo139653.4;Parent=Physo139653;constitutive=1;rank=4 scaffold_76 . exon 347356 348678 . + . ID=Physo139653.5;Parent=Physo139653;constitutive=1;rank=5 scaffold_76 . exon 348736 348834 . + . ID=Physo139653.6;Parent=Physo139653;constitutive=1;rank=6 scaffold_76 . exon 349152 349442 . + . ID=Physo139653.7;Parent=Physo139653;constitutive=1;rank=7 scaffold_76 . exon 349492 350035 . + . ID=Physo139653.8;Parent=Physo139653;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_76 . exon 350077 350096 . + . ID=Physo139653.9;Parent=Physo139653;constitutive=1;ensembl_phase=1;rank=9 scaffold_76 ensembl protein_coding_gene 350757 351336 . - . ID=Physo139654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760065;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 350757 351336 . - . ID=Physo139654;Parent=Physo139654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 350757 350806 . - 0 ID=Physo139654;Parent=Physo139654;rank=2 scaffold_76 . exon 350757 350806 . - . ID=Physo139654.2;Parent=Physo139654;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 350856 351336 . - 0 ID=Physo139654;Parent=Physo139654;rank=1 scaffold_76 . exon 350856 351336 . - . ID=Physo139654.1;Parent=Physo139654;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 . repeat_region 352851 365612 . ? . description=dust scaffold_76 ensembl protein_coding_gene 373546 374295 . - . ID=Physo139655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760066;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 373546 374295 . - . ID=Physo139655;Parent=Physo139655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 373546 374295 . - 0 ID=Physo139655;Parent=Physo139655;rank=1 scaffold_76 . exon 373546 374295 . - . ID=Physo139655.1;Parent=Physo139655;constitutive=1;rank=1 scaffold_76 . repeat_region 376285 377027 . - . description=GypsyPi-1c_I-int scaffold_76 . repeat_region 377028 377108 . - . description=GypsyPi-1c_LTR scaffold_76 . repeat_region 380180 380254 . ? . description=trf scaffold_76 . repeat_region 380180 380270 . ? . description=trf scaffold_76 . repeat_region 382509 382516 . ? . description=dust scaffold_76 ensembl protein_coding_gene 377965 379177 . - . ID=Physo139656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760067;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 377965 379177 . - . ID=Physo139656;Parent=Physo139656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 377965 378680 . - 0 ID=Physo139656;Parent=Physo139656;rank=2 scaffold_76 . exon 377965 378680 . - . ID=Physo139656.2;Parent=Physo139656;constitutive=1;ensembl_phase=1;rank=2 scaffold_76 . CDS 379123 379177 . - 0 ID=Physo139656;Parent=Physo139656;rank=1 scaffold_76 . exon 379123 379177 . - . ID=Physo139656.1;Parent=Physo139656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_76 ensembl protein_coding_gene 381745 382299 . - . ID=Physo139657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760068;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 381745 382299 . - . ID=Physo139657;Parent=Physo139657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 381745 381759 . - 0 ID=Physo139657;Parent=Physo139657;rank=2 scaffold_76 . exon 381745 381759 . - . ID=Physo139657.2;Parent=Physo139657;constitutive=1;rank=2 scaffold_76 . CDS 381799 382299 . - 0 ID=Physo139657;Parent=Physo139657;rank=1 scaffold_76 . exon 381799 382299 . - . ID=Physo139657.1;Parent=Physo139657;constitutive=1;rank=1 scaffold_76 . biological_region 384047 384047 0.999 + . logic_name=eponine scaffold_76 . biological_region 391604 391609 0.999 - . logic_name=eponine scaffold_76 . biological_region 391618 391620 0.999 - . logic_name=eponine scaffold_76 ensembl protein_coding_gene 387467 388336 . + . ID=Physo109227;biotype=protein_coding;description=Glucanase inhibitor protein 2 [Source:UniProtKB/TrEMBL%3BAcc:Q945T9];external_name=estExt_fgenesh1_pm.C_760003;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 387467 388336 . + . ID=Physo109227;Parent=Physo109227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 387467 388336 . + 0 ID=Physo109227;Parent=Physo109227;rank=1 scaffold_76 . exon 387467 388336 . + . ID=Physo109227.1;Parent=Physo109227;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 385171 385950 . - . ID=Physo139658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760069;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 385171 385950 . - . ID=Physo139658;Parent=Physo139658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 385171 385950 . - 0 ID=Physo139658;Parent=Physo139658;rank=1 scaffold_76 . exon 385171 385950 . - . ID=Physo139658.1;Parent=Physo139658;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 390153 390938 . + . ID=Physo139660;biotype=protein_coding;description=Glucanase inhibitor protein 3 [Source:UniProtKB/TrEMBL%3BAcc:Q945T8];external_name=estExt_fgenesh1_pg.C_760071;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 390153 390938 . + . ID=Physo139660;Parent=Physo139660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 390153 390938 . + 0 ID=Physo139660;Parent=Physo139660;rank=1 scaffold_76 . exon 390153 390938 . + . ID=Physo139660.1;Parent=Physo139660;constitutive=1;rank=1 scaffold_76 ensembl protein_coding_gene 391456 393623 . + . ID=Physo139661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_760072;logic_name=jgi_physo1_1 scaffold_76 ensembl transcript 391456 393623 . + . ID=Physo139661;Parent=Physo139661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_76 . CDS 391456 392019 . + 0 ID=Physo139661;Parent=Physo139661;rank=1 scaffold_76 . exon 391456 392019 . + . ID=Physo139661.1;Parent=Physo139661;constitutive=1;rank=1 scaffold_76 . CDS 392240 393082 . + 0 ID=Physo139661;Parent=Physo139661;rank=2 scaffold_76 . exon 392240 393082 . + . ID=Physo139661.2;Parent=Physo139661;constitutive=1;rank=2 scaffold_76 . CDS 393231 393257 . + 0 ID=Physo139661;Parent=Physo139661;rank=3 scaffold_76 . exon 393231 393257 . + . ID=Physo139661.3;Parent=Physo139661;constitutive=1;rank=3 scaffold_76 . CDS 393339 393473 . + 0 ID=Physo139661;Parent=Physo139661;rank=4 scaffold_76 . exon 393339 393473 . + . ID=Physo139661.4;Parent=Physo139661;constitutive=1;rank=4 scaffold_76 . CDS 393552 393623 . + 0 ID=Physo139661;Parent=Physo139661;rank=5 scaffold_76 . exon 393552 393623 . + . ID=Physo139661.5;Parent=Physo139661;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_74 1 396035 scaffold_74 . biological_region 966 970 0.999 - . logic_name=eponine scaffold_74 . repeat_region 1566 1575 . ? . description=dust scaffold_74 . biological_region 1729 1730 0.999 - . logic_name=eponine scaffold_74 . repeat_region 2817 2869 . ? . description=trf scaffold_74 . repeat_region 3484 3504 . ? . description=trf scaffold_74 . repeat_region 3652 3800 . ? . description=trf scaffold_74 . repeat_region 7574 7616 . ? . description=trf scaffold_74 . repeat_region 8309 8367 . ? . description=trf scaffold_74 . repeat_region 9897 9904 . ? . description=dust scaffold_74 ensembl protein_coding_gene 45 412 . + . ID=Physo139430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740001;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 45 412 . + . ID=Physo139430;Parent=Physo139430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . exon 45 412 . + . ID=Physo139430.1;Parent=Physo139430;constitutive=1;ensembl_phase=-1;rank=1 scaffold_74 . CDS 134 412 . + 0 ID=Physo139430;Parent=Physo139430;rank=1 scaffold_74 ensembl protein_coding_gene 16503 17765 . + . ID=Physo139431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740002;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 16503 17765 . + . ID=Physo139431;Parent=Physo139431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 16503 17765 . + 0 ID=Physo139431;Parent=Physo139431;rank=1 scaffold_74 . exon 16503 17765 . + . ID=Physo139431.1;Parent=Physo139431;constitutive=1;rank=1 scaffold_74 . repeat_region 24111 24119 . ? . description=dust scaffold_74 ensembl protein_coding_gene 25143 26573 . - . ID=Physo139432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740003;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 25143 26573 . - . ID=Physo139432;Parent=Physo139432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 25143 26573 . - 0 ID=Physo139432;Parent=Physo139432;rank=1 scaffold_74 . exon 25143 26573 . - . ID=Physo139432.1;Parent=Physo139432;constitutive=1;rank=1 scaffold_74 . biological_region 31844 31850 0.999 - . logic_name=eponine scaffold_74 . biological_region 31874 31876 0.999 - . logic_name=eponine scaffold_74 . biological_region 35606 35609 0.999 + . logic_name=eponine scaffold_74 . biological_region 35684 35687 0.999 - . logic_name=eponine scaffold_74 . biological_region 35752 35754 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 34102 34545 . - . ID=Physo139433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740004;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 34102 34545 . - . ID=Physo139433;Parent=Physo139433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 34102 34545 . - 0 ID=Physo139433;Parent=Physo139433;rank=1 scaffold_74 . exon 34102 34545 . - . ID=Physo139433.1;Parent=Physo139433;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 34941 35825 . - . ID=Physo139434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740005;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 34941 35825 . - . ID=Physo139434;Parent=Physo139434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 34941 35825 . - 0 ID=Physo139434;Parent=Physo139434;rank=1 scaffold_74 . exon 34941 35825 . - . ID=Physo139434.1;Parent=Physo139434;constitutive=1;rank=1 scaffold_74 . repeat_region 47485 47526 . ? . description=dust scaffold_74 . repeat_region 47497 47526 . ? . description=trf scaffold_74 ensembl protein_coding_gene 40298 46693 . - . ID=Physo139435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740006;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 40298 46693 . - . ID=Physo139435;Parent=Physo139435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 40298 44952 . - 0 ID=Physo139435;Parent=Physo139435;rank=3 scaffold_74 . exon 40298 44952 . - . ID=Physo139435.3;Parent=Physo139435;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 45577 45707 . - 0 ID=Physo139435;Parent=Physo139435;rank=2 scaffold_74 . exon 45577 45707 . - . ID=Physo139435.2;Parent=Physo139435;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_74 . CDS 45789 46693 . - 0 ID=Physo139435;Parent=Physo139435;rank=1 scaffold_74 . exon 45789 46693 . - . ID=Physo139435.1;Parent=Physo139435;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 ensembl protein_coding_gene 47584 49209 . - . ID=Physo139436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740007;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 47584 49209 . - . ID=Physo139436;Parent=Physo139436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 47584 49209 . - 0 ID=Physo139436;Parent=Physo139436;rank=1 scaffold_74 . exon 47584 49209 . - . ID=Physo139436.1;Parent=Physo139436;constitutive=1;rank=1 scaffold_74 . biological_region 54396 54396 0.999 + . logic_name=eponine scaffold_74 . repeat_region 58676 58792 . + . description=(CGAAT)n scaffold_74 . biological_region 59145 59151 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 51430 51891 . - . ID=Physo139437;biotype=protein_coding;description=PsAvh42 [Source:UniProtKB/TrEMBL%3BAcc:E0W5E9];external_name=estExt_fgenesh1_pg.C_740008;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 51430 51891 . - . ID=Physo139437;Parent=Physo139437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 51430 51891 . - 0 ID=Physo139437;Parent=Physo139437;rank=1 scaffold_74 . exon 51430 51891 . - . ID=Physo139437.1;Parent=Physo139437;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 59302 59736 . + . ID=Physo139438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740009;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 59302 59736 . + . ID=Physo139438;Parent=Physo139438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 59302 59486 . + 0 ID=Physo139438;Parent=Physo139438;rank=1 scaffold_74 . exon 59302 59486 . + . ID=Physo139438.1;Parent=Physo139438;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . CDS 59568 59736 . + 0 ID=Physo139438;Parent=Physo139438;rank=2 scaffold_74 . repeat_region 59675 59722 . + . description=Sola3-2_PS scaffold_74 . repeat_region 62216 62229 . ? . description=dust scaffold_74 . repeat_region 62413 62448 . ? . description=trf scaffold_74 . repeat_region 66522 68098 . ? . description=dust scaffold_74 . exon 59568 59736 . + . ID=Physo139438.2;Parent=Physo139438;constitutive=1;ensembl_phase=2;rank=2 scaffold_74 . biological_region 73877 73880 0.999 - . logic_name=eponine scaffold_74 . biological_region 74766 74770 0.999 - . logic_name=eponine scaffold_74 . biological_region 78597 78599 0.999 - . logic_name=eponine scaffold_74 . biological_region 78655 78657 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 69710 71638 . + . ID=Physo139439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740010;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 69710 71638 . + . ID=Physo139439;Parent=Physo139439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 69710 70300 . + 0 ID=Physo139439;Parent=Physo139439;rank=1 scaffold_74 . exon 69710 70300 . + . ID=Physo139439.1;Parent=Physo139439;constitutive=1;rank=1 scaffold_74 . CDS 70430 71095 . + 0 ID=Physo139439;Parent=Physo139439;rank=2 scaffold_74 . exon 70430 71095 . + . ID=Physo139439.2;Parent=Physo139439;constitutive=1;rank=2 scaffold_74 . CDS 71156 71638 . + 0 ID=Physo139439;Parent=Physo139439;rank=3 scaffold_74 . exon 71156 71638 . + . ID=Physo139439.3;Parent=Physo139439;constitutive=1;rank=3 scaffold_74 ensembl protein_coding_gene 72257 74194 . - . ID=Physo139440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740011;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 72257 74194 . - . ID=Physo139440;Parent=Physo139440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 72257 74146 . - 0 ID=Physo139440;Parent=Physo139440;rank=1 scaffold_74 . exon 72257 74194 . - . ID=Physo139440.1;Parent=Physo139440;constitutive=1;ensembl_phase=-1;rank=1 scaffold_74 ensembl protein_coding_gene 74706 75343 . + . ID=Physo139441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740012;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 74706 75343 . + . ID=Physo139441;Parent=Physo139441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 74706 74969 . + 0 ID=Physo139441;Parent=Physo139441;rank=1 scaffold_74 . exon 74706 74969 . + . ID=Physo139441.1;Parent=Physo139441;constitutive=1;rank=1 scaffold_74 . CDS 75052 75200 . + 0 ID=Physo139441;Parent=Physo139441;rank=2 scaffold_74 . exon 75052 75200 . + . ID=Physo139441.2;Parent=Physo139441;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_74 . CDS 75235 75343 . + 0 ID=Physo139441;Parent=Physo139441;rank=3 scaffold_74 . exon 75235 75343 . + . ID=Physo139441.3;Parent=Physo139441;constitutive=1;ensembl_phase=2;rank=3 scaffold_74 ensembl protein_coding_gene 77108 78813 . - . ID=Physo139442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740013;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 77108 78813 . - . ID=Physo139442;Parent=Physo139442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . exon 77108 77323 . - . ID=Physo139442.2;Parent=Physo139442;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_74 . CDS 77213 77323 . - 0 ID=Physo139442;Parent=Physo139442;rank=2 scaffold_74 . CDS 77401 78813 . - 0 ID=Physo139442;Parent=Physo139442;rank=1 scaffold_74 . exon 77401 78813 . - . ID=Physo139442.1;Parent=Physo139442;constitutive=1;rank=1 scaffold_74 . repeat_region 79520 79527 . ? . description=dust scaffold_74 . repeat_region 80932 80940 . ? . description=dust scaffold_74 . repeat_region 82914 82998 . ? . description=trf scaffold_74 . repeat_region 82986 83057 . ? . description=trf scaffold_74 . repeat_region 84717 84742 . ? . description=trf scaffold_74 . repeat_region 84906 84936 . ? . description=dust scaffold_74 . repeat_region 86259 86266 . ? . description=dust scaffold_74 . repeat_region 87221 87316 . ? . description=dust scaffold_74 . repeat_region 87221 87316 . ? . description=trf scaffold_74 . repeat_region 87221 87324 . + . description=(TC)n scaffold_74 ensembl protein_coding_gene 79739 80845 . - . ID=Physo139443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740014;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 79739 80845 . - . ID=Physo139443;Parent=Physo139443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 79739 80845 . - 0 ID=Physo139443;Parent=Physo139443;rank=1 scaffold_74 . exon 79739 80845 . - . ID=Physo139443.1;Parent=Physo139443;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 81869 83162 . - . ID=Physo139444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740015;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 81869 83162 . - . ID=Physo139444;Parent=Physo139444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 81869 82299 . - 0 ID=Physo139444;Parent=Physo139444;rank=3 scaffold_74 . exon 81869 82299 . - . ID=Physo139444.3;Parent=Physo139444;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 82331 82396 . - 0 ID=Physo139444;Parent=Physo139444;rank=2 scaffold_74 . exon 82331 82396 . - . ID=Physo139444.2;Parent=Physo139444;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 82673 83162 . - 0 ID=Physo139444;Parent=Physo139444;rank=1 scaffold_74 . exon 82673 83162 . - . ID=Physo139444.1;Parent=Physo139444;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . biological_region 89242 89246 0.999 - . logic_name=eponine scaffold_74 . biological_region 89299 89300 0.999 + . logic_name=eponine scaffold_74 . biological_region 92797 92802 0.999 - . logic_name=eponine scaffold_74 . biological_region 92841 92843 0.999 - . logic_name=eponine scaffold_74 . biological_region 92852 92861 0.999 + . logic_name=eponine scaffold_74 . biological_region 92888 92890 0.999 - . logic_name=eponine scaffold_74 . biological_region 94092 94098 0.999 + . logic_name=eponine scaffold_74 . biological_region 96746 96749 0.999 + . logic_name=eponine scaffold_74 . biological_region 98460 98462 0.999 + . logic_name=eponine scaffold_74 . biological_region 98567 98568 0.999 - . logic_name=eponine scaffold_74 . biological_region 98875 98878 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 89851 90324 . + . ID=Physo139445;biotype=protein_coding;description=PsAvh189 [Source:UniProtKB/TrEMBL%3BAcc:E0W5F0];external_name=estExt_fgenesh1_pg.C_740016;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 89851 90324 . + . ID=Physo139445;Parent=Physo139445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 89851 90324 . + 0 ID=Physo139445;Parent=Physo139445;rank=1 scaffold_74 . exon 89851 90324 . + . ID=Physo139445.1;Parent=Physo139445;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 98986 101373 . + . ID=Physo139446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740017;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 98986 101373 . + . ID=Physo139446;Parent=Physo139446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 98986 99716 . + 0 ID=Physo139446;Parent=Physo139446;rank=1 scaffold_74 . exon 98986 99716 . + . ID=Physo139446.1;Parent=Physo139446;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . CDS 99820 100041 . + 0 ID=Physo139446;Parent=Physo139446;rank=2 scaffold_74 . CDS 100134 100464 . + 0 ID=Physo139446;Parent=Physo139446;rank=3 scaffold_74 . CDS 100495 101373 . + 0 ID=Physo139446;Parent=Physo139446;rank=4 scaffold_74 . repeat_region 99213 101571 . + . description=GypsyPi-1c_I-int scaffold_74 . repeat_region 101619 101638 . ? . description=trf scaffold_74 . repeat_region 101819 102081 . + . description=GypsyPi-1c_I-int scaffold_74 . repeat_region 107933 107941 . ? . description=dust scaffold_74 . exon 99820 100041 . + . ID=Physo139446.2;Parent=Physo139446;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_74 . exon 100134 100464 . + . ID=Physo139446.3;Parent=Physo139446;constitutive=1;ensembl_phase=2;rank=3 scaffold_74 . exon 100495 101373 . + . ID=Physo139446.4;Parent=Physo139446;constitutive=1;rank=4 scaffold_74 . repeat_region 122630 122637 . ? . description=dust scaffold_74 . biological_region 125869 125869 0.999 + . logic_name=eponine scaffold_74 . repeat_region 127749 127758 . ? . description=dust scaffold_74 . biological_region 128644 128647 0.999 - . logic_name=eponine scaffold_74 . biological_region 128680 128685 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 120852 122585 . + . ID=Physo139447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740018;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 120852 122585 . + . ID=Physo139447;Parent=Physo139447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 120852 122585 . + 0 ID=Physo139447;Parent=Physo139447;rank=1 scaffold_74 . exon 120852 122585 . + . ID=Physo139447.1;Parent=Physo139447;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 122848 125985 . - . ID=Physo139448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740019;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 122848 125985 . - . ID=Physo139448;Parent=Physo139448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 122848 125985 . - 0 ID=Physo139448;Parent=Physo139448;rank=1 scaffold_74 . exon 122848 125985 . - . ID=Physo139448.1;Parent=Physo139448;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 128064 130313 . - . ID=Physo139449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740020;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 128064 130313 . - . ID=Physo139449;Parent=Physo139449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 128064 130313 . - 0 ID=Physo139449;Parent=Physo139449;rank=1 scaffold_74 . exon 128064 130313 . - . ID=Physo139449.1;Parent=Physo139449;constitutive=1;rank=1 scaffold_74 . repeat_region 138604 138830 . + . description=Sola3-2_PS scaffold_74 ensembl protein_coding_gene 133047 137109 . + . ID=Physo120283;biotype=protein_coding;external_name=estExt_Genewise1.C_740048;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 133047 137109 . + . ID=Physo120283;Parent=Physo120283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 133047 133750 . + 0 ID=Physo120283;Parent=Physo120283;rank=1 scaffold_74 . exon 133047 133750 . + . ID=Physo120283.1;Parent=Physo120283;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . CDS 133819 133896 . + 0 ID=Physo120283;Parent=Physo120283;rank=2 scaffold_74 . exon 133819 133896 . + . ID=Physo120283.2;Parent=Physo120283;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_74 . CDS 133967 134608 . + 0 ID=Physo120283;Parent=Physo120283;rank=3 scaffold_74 . exon 133967 134608 . + . ID=Physo120283.3;Parent=Physo120283;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_74 . CDS 134680 136608 . + 0 ID=Physo120283;Parent=Physo120283;rank=4 scaffold_74 . exon 134680 136608 . + . ID=Physo120283.4;Parent=Physo120283;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_74 . CDS 136761 137109 . + 0 ID=Physo120283;Parent=Physo120283;rank=5 scaffold_74 . exon 136761 137109 . + . ID=Physo120283.5;Parent=Physo120283;constitutive=1;ensembl_phase=2;rank=5 scaffold_74 ensembl protein_coding_gene 137302 138969 . - . ID=Physo139452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740023;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 137302 138969 . - . ID=Physo139452;Parent=Physo139452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 137302 138969 . - 0 ID=Physo139452;Parent=Physo139452;rank=1 scaffold_74 . exon 137302 138969 . - . ID=Physo139452.1;Parent=Physo139452;constitutive=1;rank=1 scaffold_74 . biological_region 138817 138822 0.999 + . logic_name=eponine scaffold_74 . biological_region 138905 138909 0.999 - . logic_name=eponine scaffold_74 . repeat_region 139404 139448 . ? . description=trf scaffold_74 . repeat_region 140090 140122 . ? . description=trf scaffold_74 . biological_region 143365 143370 0.999 - . logic_name=eponine scaffold_74 . biological_region 144417 144417 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 140700 142343 . - . ID=Physo139453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740024;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 140700 142343 . - . ID=Physo139453;Parent=Physo139453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 140700 142343 . - 0 ID=Physo139453;Parent=Physo139453;rank=1 scaffold_74 . exon 140700 142343 . - . ID=Physo139453.1;Parent=Physo139453;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 142610 143445 . + . ID=Physo139454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740025;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 142610 143445 . + . ID=Physo139454;Parent=Physo139454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . exon 142610 142801 . + . ID=Physo139454.1;Parent=Physo139454;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_74 . CDS 142620 142801 . + 0 ID=Physo139454;Parent=Physo139454;rank=1 scaffold_74 . CDS 142878 143445 . + 0 ID=Physo139454;Parent=Physo139454;rank=2 scaffold_74 . exon 142878 143445 . + . ID=Physo139454.2;Parent=Physo139454;constitutive=1;ensembl_phase=2;rank=2 scaffold_74 ensembl protein_coding_gene 144187 147276 . + . ID=Physo139455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740026;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 144187 147276 . + . ID=Physo139455;Parent=Physo139455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 144187 147276 . + 0 ID=Physo139455;Parent=Physo139455;rank=1 scaffold_74 . exon 144187 147276 . + . ID=Physo139455.1;Parent=Physo139455;constitutive=1;rank=1 scaffold_74 . repeat_region 152121 152146 . ? . description=dust scaffold_74 . repeat_region 156050 156099 . ? . description=dust scaffold_74 . repeat_region 157152 157201 . ? . description=dust scaffold_74 ensembl protein_coding_gene 149650 151899 . + . ID=Physo139456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740027;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 149650 151899 . + . ID=Physo139456;Parent=Physo139456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 149650 151899 . + 0 ID=Physo139456;Parent=Physo139456;rank=1 scaffold_74 . exon 149650 151899 . + . ID=Physo139456.1;Parent=Physo139456;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 152206 153157 . + . ID=Physo139457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740028;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 152206 153157 . + . ID=Physo139457;Parent=Physo139457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 152206 153006 . + 0 ID=Physo139457;Parent=Physo139457;rank=1 scaffold_74 . exon 152206 153006 . + . ID=Physo139457.1;Parent=Physo139457;constitutive=1;rank=1 scaffold_74 . CDS 153146 153157 . + 0 ID=Physo139457;Parent=Physo139457;rank=2 scaffold_74 . exon 153146 153157 . + . ID=Physo139457.2;Parent=Physo139457;constitutive=1;rank=2 scaffold_74 ensembl protein_coding_gene 155821 159454 . - . ID=Physo139458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740029;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 155821 159454 . - . ID=Physo139458;Parent=Physo139458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 155821 156045 . - 0 ID=Physo139458;Parent=Physo139458;rank=3 scaffold_74 . exon 155821 156045 . - . ID=Physo139458.3;Parent=Physo139458;constitutive=1;rank=3 scaffold_74 . CDS 156105 157139 . - 0 ID=Physo139458;Parent=Physo139458;rank=2 scaffold_74 . exon 156105 157139 . - . ID=Physo139458.2;Parent=Physo139458;constitutive=1;rank=2 scaffold_74 . CDS 157259 159454 . - 0 ID=Physo139458;Parent=Physo139458;rank=1 scaffold_74 . exon 157259 159454 . - . ID=Physo139458.1;Parent=Physo139458;constitutive=1;rank=1 scaffold_74 . repeat_region 159601 159651 . ? . description=trf scaffold_74 . repeat_region 159601 159653 . ? . description=trf scaffold_74 . repeat_region 159714 159751 . ? . description=trf scaffold_74 ensembl protein_coding_gene 166084 167469 . - . ID=Physo139459;biotype=protein_coding;description=PsAvh41 [Source:UniProtKB/TrEMBL%3BAcc:E0W5F1];external_name=estExt_fgenesh1_pg.C_740030;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 166084 167469 . - . ID=Physo139459;Parent=Physo139459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 166084 167469 . - 0 ID=Physo139459;Parent=Physo139459;rank=1 scaffold_74 . exon 166084 167469 . - . ID=Physo139459.1;Parent=Physo139459;constitutive=1;rank=1 scaffold_74 . repeat_region 168951 168963 . ? . description=dust scaffold_74 . biological_region 172700 172704 0.999 + . logic_name=eponine scaffold_74 . repeat_region 173296 173994 . - . description=GypsyPi-1c_I-int scaffold_74 . biological_region 173362 173365 0.999 + . logic_name=eponine scaffold_74 . biological_region 173809 173813 0.999 - . logic_name=eponine scaffold_74 . repeat_region 174193 174801 . - . description=GypsyPi-1c_I-int scaffold_74 . biological_region 174711 174715 0.999 + . logic_name=eponine scaffold_74 . biological_region 174879 174881 0.999 + . logic_name=eponine scaffold_74 . biological_region 176007 176010 0.999 - . logic_name=eponine scaffold_74 . biological_region 176031 176031 0.999 - . logic_name=eponine scaffold_74 . biological_region 176271 176275 0.999 + . logic_name=eponine scaffold_74 . biological_region 176298 176299 0.999 - . logic_name=eponine scaffold_74 ensembl pseudogenic_tRNA 172094 172165 . + . ID=EPrPSOG00000000088;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_74 ensembl transcript 172094 172165 . + . ID=EPrPSOT00000000088;Parent=EPrPSOG00000000088;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_74 . exon 172094 172165 . + . ID=EPrPSOE00000000088;Parent=EPrPSOT00000000088;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 172179 177324 . - . ID=Physo139460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740031;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 172179 177324 . - . ID=Physo139460;Parent=Physo139460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 172179 172813 . - 0 ID=Physo139460;Parent=Physo139460;rank=7 scaffold_74 . exon 172179 172813 . - . ID=Physo139460.7;Parent=Physo139460;constitutive=1;ensembl_phase=1;rank=7 scaffold_74 . CDS 172833 174189 . - 0 ID=Physo139460;Parent=Physo139460;rank=6 scaffold_74 . exon 172833 174189 . - . ID=Physo139460.6;Parent=Physo139460;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_74 . CDS 174209 175063 . - 0 ID=Physo139460;Parent=Physo139460;rank=5 scaffold_74 . exon 174209 175063 . - . ID=Physo139460.5;Parent=Physo139460;constitutive=1;rank=5 scaffold_74 . CDS 175164 175593 . - 0 ID=Physo139460;Parent=Physo139460;rank=4 scaffold_74 . exon 175164 175593 . - . ID=Physo139460.4;Parent=Physo139460;constitutive=1;ensembl_phase=2;rank=4 scaffold_74 . CDS 175837 176241 . - 0 ID=Physo139460;Parent=Physo139460;rank=3 scaffold_74 . exon 175837 176241 . - . ID=Physo139460.3;Parent=Physo139460;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_74 . CDS 176306 176394 . - 0 ID=Physo139460;Parent=Physo139460;rank=2 scaffold_74 . exon 176306 176394 . - . ID=Physo139460.2;Parent=Physo139460;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_74 . CDS 176452 177324 . - 0 ID=Physo139460;Parent=Physo139460;rank=1 scaffold_74 . exon 176452 177324 . - . ID=Physo139460.1;Parent=Physo139460;constitutive=1;rank=1 scaffold_74 . repeat_region 178227 178254 . ? . description=trf scaffold_74 . repeat_region 178737 178774 . ? . description=trf scaffold_74 ensembl protein_coding_gene 195983 196558 . - . ID=Physo139461;biotype=protein_coding;description=PsAvh190 [Source:UniProtKB/TrEMBL%3BAcc:E0W5F2];external_name=estExt_fgenesh1_pg.C_740032;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 195983 196558 . - . ID=Physo139461;Parent=Physo139461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 195983 196558 . - 0 ID=Physo139461;Parent=Physo139461;rank=1 scaffold_74 . exon 195983 196558 . - . ID=Physo139461.1;Parent=Physo139461;constitutive=1;rank=1 scaffold_74 . repeat_region 199506 199514 . ? . description=dust scaffold_74 . biological_region 202885 202885 0.999 - . logic_name=eponine scaffold_74 . repeat_region 203044 203058 . ? . description=dust scaffold_74 . repeat_region 203622 203630 . ? . description=dust scaffold_74 . repeat_region 203744 203770 . ? . description=dust scaffold_74 . repeat_region 204279 204287 . ? . description=dust scaffold_74 . repeat_region 205650 205659 . ? . description=dust scaffold_74 ensembl protein_coding_gene 206830 211611 . - . ID=Physo139463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740034;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 206830 211611 . - . ID=Physo139463;Parent=Physo139463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 206830 206855 . - 0 ID=Physo139463;Parent=Physo139463;rank=7 scaffold_74 . exon 206830 206855 . - . ID=Physo139463.7;Parent=Physo139463;constitutive=1;ensembl_phase=1;rank=7 scaffold_74 . CDS 206958 207750 . - 0 ID=Physo139463;Parent=Physo139463;rank=6 scaffold_74 . exon 206958 207750 . - . ID=Physo139463.6;Parent=Physo139463;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_74 . CDS 207950 208121 . - 0 ID=Physo139463;Parent=Physo139463;rank=5 scaffold_74 . CDS 208169 208863 . - 0 ID=Physo139463;Parent=Physo139463;rank=4 scaffold_74 . CDS 208992 210110 . - 0 ID=Physo139463;Parent=Physo139463;rank=3 scaffold_74 . CDS 210147 210652 . - 0 ID=Physo139463;Parent=Physo139463;rank=2 scaffold_74 . CDS 210768 211611 . - 0 ID=Physo139463;Parent=Physo139463;rank=1 scaffold_74 ensembl protein_coding_gene 198601 201682 . - . ID=Physo157984;biotype=protein_coding;external_name=C_scaffold_74000001;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 198601 201682 . - . ID=Physo157984;Parent=Physo157984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 198601 198990 . - 0 ID=Physo157984;Parent=Physo157984;rank=9 scaffold_74 . exon 198601 198990 . - . ID=Physo157984.9;Parent=Physo157984;constitutive=1;rank=9 scaffold_74 . CDS 199060 199294 . - 0 ID=Physo157984;Parent=Physo157984;rank=8 scaffold_74 . exon 199060 199294 . - . ID=Physo157984.8;Parent=Physo157984;constitutive=1;ensembl_phase=2;rank=8 scaffold_74 . CDS 199361 199446 . - 0 ID=Physo157984;Parent=Physo157984;rank=7 scaffold_74 . exon 199361 199446 . - . ID=Physo157984.7;Parent=Physo157984;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_74 . CDS 199527 199610 . - 0 ID=Physo157984;Parent=Physo157984;rank=6 scaffold_74 . exon 199527 199610 . - . ID=Physo157984.6;Parent=Physo157984;constitutive=1;rank=6 scaffold_74 . CDS 199683 199908 . - 0 ID=Physo157984;Parent=Physo157984;rank=5 scaffold_74 . exon 199683 199908 . - . ID=Physo157984.5;Parent=Physo157984;constitutive=1;ensembl_phase=2;rank=5 scaffold_74 . CDS 200353 200688 . - 0 ID=Physo157984;Parent=Physo157984;rank=4 scaffold_74 . exon 200353 200688 . - . ID=Physo157984.4;Parent=Physo157984;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_74 . CDS 200766 201247 . - 0 ID=Physo157984;Parent=Physo157984;rank=3 scaffold_74 . exon 200766 201247 . - . ID=Physo157984.3;Parent=Physo157984;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_74 . CDS 201317 201481 . - 0 ID=Physo157984;Parent=Physo157984;rank=2 scaffold_74 . exon 201317 201481 . - . ID=Physo157984.2;Parent=Physo157984;constitutive=1;rank=2 scaffold_74 . CDS 201509 201682 . - 0 ID=Physo157984;Parent=Physo157984;rank=1 scaffold_74 . exon 201509 201682 . - . ID=Physo157984.1;Parent=Physo157984;constitutive=1;rank=1 scaffold_74 . repeat_region 212143 212189 . ? . description=trf scaffold_74 . repeat_region 212322 212350 . ? . description=trf scaffold_74 . repeat_region 212884 212922 . ? . description=trf scaffold_74 . exon 207950 208121 . - . ID=Physo139463.5;Parent=Physo139463;constitutive=1;ensembl_phase=2;rank=5 scaffold_74 . exon 208169 208863 . - . ID=Physo139463.4;Parent=Physo139463;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_74 . exon 208992 210110 . - . ID=Physo139463.3;Parent=Physo139463;constitutive=1;rank=3 scaffold_74 . exon 210147 210652 . - . ID=Physo139463.2;Parent=Physo139463;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . exon 210768 211611 . - . ID=Physo139463.1;Parent=Physo139463;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 ensembl protein_coding_gene 212538 213409 . + . ID=Physo139464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740035;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 212538 213409 . + . ID=Physo139464;Parent=Physo139464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 212538 212568 . + 0 ID=Physo139464;Parent=Physo139464;rank=1 scaffold_74 . exon 212538 212568 . + . ID=Physo139464.1;Parent=Physo139464;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 212622 212848 . + 0 ID=Physo139464;Parent=Physo139464;rank=2 scaffold_74 . exon 212622 212848 . + . ID=Physo139464.2;Parent=Physo139464;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 212898 213170 . + 0 ID=Physo139464;Parent=Physo139464;rank=3 scaffold_74 . exon 212898 213409 . + . ID=Physo139464.3;Parent=Physo139464;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_74 . repeat_region 218138 218187 . ? . description=dust scaffold_74 . repeat_region 218223 218602 . ? . description=dust scaffold_74 . repeat_region 219137 219186 . ? . description=dust scaffold_74 . biological_region 219360 219362 0.999 + . logic_name=eponine scaffold_74 . biological_region 220070 220074 0.999 - . logic_name=eponine scaffold_74 . biological_region 220556 220559 0.999 + . logic_name=eponine scaffold_74 . biological_region 221403 221407 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 219331 220658 . - . ID=Physo139465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740036;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 219331 220658 . - . ID=Physo139465;Parent=Physo139465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 219331 219493 . - 0 ID=Physo139465;Parent=Physo139465;rank=3 scaffold_74 . exon 219331 219493 . - . ID=Physo139465.3;Parent=Physo139465;constitutive=1;ensembl_phase=2;rank=3 scaffold_74 . CDS 219570 219721 . - 0 ID=Physo139465;Parent=Physo139465;rank=2 scaffold_74 . exon 219570 219721 . - . ID=Physo139465.2;Parent=Physo139465;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_74 . CDS 219801 220646 . - 0 ID=Physo139465;Parent=Physo139465;rank=1 scaffold_74 . exon 219801 220658 . - . ID=Physo139465.1;Parent=Physo139465;constitutive=1;ensembl_phase=-1;rank=1 scaffold_74 ensembl protein_coding_gene 221913 222230 . - . ID=Physo139466;biotype=protein_coding;description=PsAvh16 [Source:UniProtKB/TrEMBL%3BAcc:E0W5F3];external_name=estExt_fgenesh1_pg.C_740037;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 221913 222230 . - . ID=Physo139466;Parent=Physo139466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 221913 222230 . - 0 ID=Physo139466;Parent=Physo139466;rank=1 scaffold_74 . exon 221913 222230 . - . ID=Physo139466.1;Parent=Physo139466;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 226383 227050 . - . ID=Physo139467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740038;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 226383 227050 . - . ID=Physo139467;Parent=Physo139467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 226383 226392 . - 0 ID=Physo139467;Parent=Physo139467;rank=2 scaffold_74 . exon 226383 226392 . - . ID=Physo139467.2;Parent=Physo139467;constitutive=1;ensembl_phase=2;rank=2 scaffold_74 . CDS 226419 227050 . - 0 ID=Physo139467;Parent=Physo139467;rank=1 scaffold_74 . exon 226419 227050 . - . ID=Physo139467.1;Parent=Physo139467;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . repeat_region 232635 232666 . ? . description=trf scaffold_74 . repeat_region 232635 232666 . ? . description=trf scaffold_74 . repeat_region 232687 241931 . ? . description=dust scaffold_74 . repeat_region 242167 242202 . ? . description=dust scaffold_74 . biological_region 242979 242980 0.999 - . logic_name=eponine scaffold_74 . biological_region 243037 243043 0.999 - . logic_name=eponine scaffold_74 . biological_region 243057 243063 0.999 - . logic_name=eponine scaffold_74 . biological_region 243114 243116 0.999 + . logic_name=eponine scaffold_74 . repeat_region 245805 245854 . ? . description=dust scaffold_74 . repeat_region 246795 247433 . + . description=Polinton-1_PI scaffold_74 . repeat_region 247464 250962 . ? . description=dust scaffold_74 ensembl protein_coding_gene 242536 243447 . + . ID=Physo109213;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_740002;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 242536 243447 . + . ID=Physo109213;Parent=Physo109213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 242536 243447 . + 0 ID=Physo109213;Parent=Physo109213;rank=1 scaffold_74 . exon 242536 243447 . + . ID=Physo109213.1;Parent=Physo109213;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 244521 245355 . - . ID=Physo139469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740040;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 244521 245355 . - . ID=Physo139469;Parent=Physo139469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 244521 244978 . - 0 ID=Physo139469;Parent=Physo139469;rank=2 scaffold_74 . exon 244521 244978 . - . ID=Physo139469.2;Parent=Physo139469;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 245295 245355 . - 0 ID=Physo139469;Parent=Physo139469;rank=1 scaffold_74 . exon 245295 245355 . - . ID=Physo139469.1;Parent=Physo139469;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 ensembl protein_coding_gene 245768 246616 . + . ID=Physo139470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740041;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 245768 246616 . + . ID=Physo139470;Parent=Physo139470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 245768 245774 . + 0 ID=Physo139470;Parent=Physo139470;rank=1 scaffold_74 . exon 245768 245774 . + . ID=Physo139470.1;Parent=Physo139470;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 245910 246616 . + 0 ID=Physo139470;Parent=Physo139470;rank=2 scaffold_74 . exon 245910 246616 . + . ID=Physo139470.2;Parent=Physo139470;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . repeat_region 254415 254458 . ? . description=trf scaffold_74 . repeat_region 257127 257263 . ? . description=trf scaffold_74 . repeat_region 258046 258053 . ? . description=dust scaffold_74 . repeat_region 258207 258215 . ? . description=dust scaffold_74 . repeat_region 258504 258808 . - . description=GypsyPi-1c_LTR scaffold_74 . biological_region 259823 259827 0.999 - . logic_name=eponine scaffold_74 . biological_region 259840 259843 0.999 - . logic_name=eponine scaffold_74 . repeat_region 260333 260410 . - . description=GypsyPi-1c_I-int scaffold_74 . repeat_region 261246 261400 . - . description=GypsyPi-1c_I-int scaffold_74 . repeat_region 261402 263541 . - . description=GypsyPi-1c_I-int scaffold_74 . repeat_region 263542 263839 . - . description=GypsyPi-1c_LTR scaffold_74 ensembl protein_coding_gene 262489 263454 . - . ID=Physo139471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740042;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 262489 263454 . - . ID=Physo139471;Parent=Physo139471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 262489 262934 . - 0 ID=Physo139471;Parent=Physo139471;rank=2 scaffold_74 . exon 262489 262934 . - . ID=Physo139471.2;Parent=Physo139471;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 263190 263454 . - 0 ID=Physo139471;Parent=Physo139471;rank=1 scaffold_74 . exon 263190 263454 . - . ID=Physo139471.1;Parent=Physo139471;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . repeat_region 272361 272419 . ? . description=trf scaffold_74 . repeat_region 272362 272419 . ? . description=trf scaffold_74 ensembl protein_coding_gene 268673 270268 . - . ID=Physo139472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740043;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 268673 270268 . - . ID=Physo139472;Parent=Physo139472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 268673 270268 . - 0 ID=Physo139472;Parent=Physo139472;rank=1 scaffold_74 . exon 268673 270268 . - . ID=Physo139472.1;Parent=Physo139472;constitutive=1;rank=1 scaffold_74 . repeat_region 279401 279410 . ? . description=dust scaffold_74 . repeat_region 279715 279722 . ? . description=dust scaffold_74 . biological_region 281790 281793 0.999 - . logic_name=eponine scaffold_74 . biological_region 282236 282237 0.999 + . logic_name=eponine scaffold_74 . biological_region 282443 282452 0.999 + . logic_name=eponine scaffold_74 . biological_region 282476 282480 0.999 - . logic_name=eponine scaffold_74 . biological_region 282499 282502 0.999 + . logic_name=eponine scaffold_74 . biological_region 282544 282549 0.999 - . logic_name=eponine scaffold_74 . biological_region 282618 282619 0.999 - . logic_name=eponine scaffold_74 . repeat_region 285967 286076 . ? . description=dust scaffold_74 . biological_region 286163 286163 0.999 - . logic_name=eponine scaffold_74 . repeat_region 286334 286366 . ? . description=dust scaffold_74 ensembl protein_coding_gene 281672 282689 . + . ID=Physo120237;biotype=protein_coding;external_name=estExt_Genewise1.C_740002;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 281672 282689 . + . ID=Physo120237;Parent=Physo120237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . exon 281672 282689 . + . ID=Physo120237.1;Parent=Physo120237;constitutive=1;ensembl_phase=-1;rank=1 scaffold_74 . CDS 281883 282689 . + 0 ID=Physo120237;Parent=Physo120237;rank=1 scaffold_74 ensembl protein_coding_gene 282996 283505 . + . ID=Physo139474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740045;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 282996 283505 . + . ID=Physo139474;Parent=Physo139474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 282996 283505 . + 0 ID=Physo139474;Parent=Physo139474;rank=1 scaffold_74 . exon 282996 283505 . + . ID=Physo139474.1;Parent=Physo139474;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 283580 285848 . - . ID=Physo139475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740046;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 283580 285848 . - . ID=Physo139475;Parent=Physo139475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 283580 283747 . - 0 ID=Physo139475;Parent=Physo139475;rank=2 scaffold_74 . exon 283580 283747 . - . ID=Physo139475.2;Parent=Physo139475;constitutive=1;rank=2 scaffold_74 . CDS 283839 285848 . - 0 ID=Physo139475;Parent=Physo139475;rank=1 scaffold_74 . exon 283839 285848 . - . ID=Physo139475.1;Parent=Physo139475;constitutive=1;rank=1 scaffold_74 . repeat_region 296577 296597 . ? . description=trf scaffold_74 . repeat_region 300520 300527 . ? . description=dust scaffold_74 . repeat_region 301868 301924 . ? . description=dust scaffold_74 . repeat_region 303862 303870 . ? . description=dust scaffold_74 . biological_region 304568 304573 0.999 - . logic_name=eponine scaffold_74 . biological_region 304676 304676 0.999 - . logic_name=eponine scaffold_74 . biological_region 304787 304789 0.999 - . logic_name=eponine scaffold_74 . repeat_region 304942 305004 . ? . description=dust scaffold_74 . repeat_region 305999 306054 . ? . description=dust scaffold_74 . biological_region 306441 306442 0.999 + . logic_name=eponine scaffold_74 ensembl protein_coding_gene 299263 302382 . + . ID=Physo139476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740047;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 299263 302382 . + . ID=Physo139476;Parent=Physo139476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 299263 299398 . + 0 ID=Physo139476;Parent=Physo139476;rank=1 scaffold_74 . exon 299263 299398 . + . ID=Physo139476.1;Parent=Physo139476;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 299441 299839 . + 0 ID=Physo139476;Parent=Physo139476;rank=2 scaffold_74 . exon 299441 299839 . + . ID=Physo139476.2;Parent=Physo139476;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 299974 300201 . + 0 ID=Physo139476;Parent=Physo139476;rank=3 scaffold_74 . exon 299974 300201 . + . ID=Physo139476.3;Parent=Physo139476;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 300772 301800 . + 0 ID=Physo139476;Parent=Physo139476;rank=4 scaffold_74 . exon 300772 301800 . + . ID=Physo139476.4;Parent=Physo139476;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_74 . CDS 301864 302091 . + 0 ID=Physo139476;Parent=Physo139476;rank=5 scaffold_74 . exon 301864 302091 . + . ID=Physo139476.5;Parent=Physo139476;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_74 . CDS 302378 302382 . + 0 ID=Physo139476;Parent=Physo139476;rank=6 scaffold_74 . exon 302378 302382 . + . ID=Physo139476.6;Parent=Physo139476;constitutive=1;ensembl_phase=1;rank=6 scaffold_74 ensembl protein_coding_gene 303299 303766 . - . ID=Physo139477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740048;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 303299 303766 . - . ID=Physo139477;Parent=Physo139477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 303299 303766 . - 0 ID=Physo139477;Parent=Physo139477;rank=1 scaffold_74 . exon 303299 303766 . - . ID=Physo139477.1;Parent=Physo139477;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 304429 306935 . + . ID=Physo139478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740049;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 304429 306935 . + . ID=Physo139478;Parent=Physo139478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 304429 306576 . + 0 ID=Physo139478;Parent=Physo139478;rank=1 scaffold_74 . exon 304429 306576 . + . ID=Physo139478.1;Parent=Physo139478;constitutive=1;rank=1 scaffold_74 . CDS 306651 306935 . + 0 ID=Physo139478;Parent=Physo139478;rank=2 scaffold_74 . exon 306651 306935 . + . ID=Physo139478.2;Parent=Physo139478;constitutive=1;rank=2 scaffold_74 . repeat_region 309748 309799 . ? . description=trf scaffold_74 . repeat_region 309755 309799 . ? . description=trf scaffold_74 ensembl protein_coding_gene 310533 311084 . + . ID=Physo120245;biotype=protein_coding;external_name=estExt_Genewise1.C_740010;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 310533 311084 . + . ID=Physo120245;Parent=Physo120245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 310533 311084 . + 0 ID=Physo120245;Parent=Physo120245;rank=1 scaffold_74 . exon 310533 311084 . + . ID=Physo120245.1;Parent=Physo120245;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 312722 312996 . + . ID=Physo120246;biotype=protein_coding;external_name=estExt_Genewise1.C_740011;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 312722 312996 . + . ID=Physo120246;Parent=Physo120246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . exon 312722 312996 . + . ID=Physo120246.1;Parent=Physo120246;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_74 . CDS 312724 312945 . + 0 ID=Physo120246;Parent=Physo120246;rank=1 scaffold_74 ensembl protein_coding_gene 313330 313884 . - . ID=Physo120251;biotype=protein_coding;external_name=estExt_Genewise1.C_740016;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 313330 313884 . - . ID=Physo120251;Parent=Physo120251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 313330 313884 . - 0 ID=Physo120251;Parent=Physo120251;rank=1 scaffold_74 . exon 313330 313884 . - . ID=Physo120251.1;Parent=Physo120251;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 307306 308544 . + . ID=Physo139479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740050;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 307306 308544 . + . ID=Physo139479;Parent=Physo139479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 307306 308544 . + 0 ID=Physo139479;Parent=Physo139479;rank=1 scaffold_74 . exon 307306 308544 . + . ID=Physo139479.1;Parent=Physo139479;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 309200 310201 . + . ID=Physo139480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740051;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 309200 310201 . + . ID=Physo139480;Parent=Physo139480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 309200 309938 . + 0 ID=Physo139480;Parent=Physo139480;rank=1 scaffold_74 . exon 309200 309938 . + . ID=Physo139480.1;Parent=Physo139480;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 310020 310201 . + 0 ID=Physo139480;Parent=Physo139480;rank=2 scaffold_74 . exon 310020 310201 . + . ID=Physo139480.2;Parent=Physo139480;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 ensembl protein_coding_gene 314731 315648 . + . ID=Physo139483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740054;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 314731 315648 . + . ID=Physo139483;Parent=Physo139483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 314731 314840 . + 0 ID=Physo139483;Parent=Physo139483;rank=1 scaffold_74 . exon 314731 314840 . + . ID=Physo139483.1;Parent=Physo139483;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . CDS 314895 315042 . + 0 ID=Physo139483;Parent=Physo139483;rank=2 scaffold_74 . exon 314895 315042 . + . ID=Physo139483.2;Parent=Physo139483;constitutive=1;ensembl_phase=2;rank=2 scaffold_74 . CDS 315211 315648 . + 0 ID=Physo139483;Parent=Physo139483;rank=3 scaffold_74 . exon 315211 315648 . + . ID=Physo139483.3;Parent=Physo139483;constitutive=1;rank=3 scaffold_74 . repeat_region 320197 320243 . + . description=Sola3-2_PS scaffold_74 . repeat_region 323464 323634 . + . description=(CAT)n scaffold_74 . biological_region 324540 324542 0.999 - . logic_name=eponine scaffold_74 . biological_region 324948 324952 0.999 + . logic_name=eponine scaffold_74 . biological_region 325275 325277 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 320886 321475 . + . ID=Physo109216;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_740005;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 320886 321475 . + . ID=Physo109216;Parent=Physo109216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . exon 320886 321475 . + . ID=Physo109216.1;Parent=Physo109216;constitutive=1;ensembl_phase=-1;rank=1 scaffold_74 . CDS 320912 321475 . + 0 ID=Physo109216;Parent=Physo109216;rank=1 scaffold_74 ensembl protein_coding_gene 321580 324626 . - . ID=Physo139485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740056;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 321580 324626 . - . ID=Physo139485;Parent=Physo139485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 321580 323134 . - 0 ID=Physo139485;Parent=Physo139485;rank=5 scaffold_74 . exon 321580 323134 . - . ID=Physo139485.5;Parent=Physo139485;constitutive=1;ensembl_phase=2;rank=5 scaffold_74 . CDS 323206 323991 . - 0 ID=Physo139485;Parent=Physo139485;rank=4 scaffold_74 . exon 323206 323991 . - . ID=Physo139485.4;Parent=Physo139485;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_74 . CDS 324070 324138 . - 0 ID=Physo139485;Parent=Physo139485;rank=3 scaffold_74 . exon 324070 324138 . - . ID=Physo139485.3;Parent=Physo139485;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_74 . CDS 324199 324313 . - 0 ID=Physo139485;Parent=Physo139485;rank=2 scaffold_74 . exon 324199 324313 . - . ID=Physo139485.2;Parent=Physo139485;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_74 . CDS 324383 324626 . - 0 ID=Physo139485;Parent=Physo139485;rank=1 scaffold_74 . exon 324383 324626 . - . ID=Physo139485.1;Parent=Physo139485;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 ensembl protein_coding_gene 325350 326550 . + . ID=Physo139486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740057;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 325350 326550 . + . ID=Physo139486;Parent=Physo139486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 325350 326471 . + 0 ID=Physo139486;Parent=Physo139486;rank=1 scaffold_74 . exon 325350 326550 . + . ID=Physo139486.1;Parent=Physo139486;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_74 ensembl protein_coding_gene 326555 328522 . - . ID=Physo139487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740058;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 326555 328522 . - . ID=Physo139487;Parent=Physo139487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 326555 328522 . - 0 ID=Physo139487;Parent=Physo139487;rank=1 scaffold_74 . exon 326555 328522 . - . ID=Physo139487.1;Parent=Physo139487;constitutive=1;rank=1 scaffold_74 . repeat_region 328554 328588 . ? . description=trf scaffold_74 ensembl protein_coding_gene 328963 333526 . - . ID=Physo139488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740059;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 328963 333526 . - . ID=Physo139488;Parent=Physo139488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . exon 328963 333526 . - . ID=Physo139488.1;Parent=Physo139488;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_74 . CDS 329021 333526 . - 0 ID=Physo139488;Parent=Physo139488;rank=1 scaffold_74 ensembl protein_coding_gene 334250 335328 . + . ID=Physo139489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740060;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 334250 335328 . + . ID=Physo139489;Parent=Physo139489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . exon 334250 335328 . + . ID=Physo139489.1;Parent=Physo139489;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_74 . CDS 334312 335283 . + 0 ID=Physo139489;Parent=Physo139489;rank=1 scaffold_74 ensembl protein_coding_gene 335492 337087 . + . ID=Physo157988;biotype=protein_coding;external_name=C_scaffold_74000005;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 335492 337087 . + . ID=Physo157988;Parent=Physo157988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 335492 335671 . + 0 ID=Physo157988;Parent=Physo157988;rank=1 scaffold_74 . exon 335492 335671 . + . ID=Physo157988.1;Parent=Physo157988;constitutive=1;rank=1 scaffold_74 . CDS 335744 335816 . + 0 ID=Physo157988;Parent=Physo157988;rank=2 scaffold_74 . exon 335744 335816 . + . ID=Physo157988.2;Parent=Physo157988;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_74 . CDS 335899 336887 . + 0 ID=Physo157988;Parent=Physo157988;rank=3 scaffold_74 . exon 335899 336887 . + . ID=Physo157988.3;Parent=Physo157988;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 336986 337087 . + 0 ID=Physo157988;Parent=Physo157988;rank=4 scaffold_74 . repeat_region 336913 336920 . ? . description=dust scaffold_74 . biological_region 342974 342976 0.999 + . logic_name=eponine scaffold_74 . biological_region 343829 343832 0.999 - . logic_name=eponine scaffold_74 . biological_region 343846 343850 0.999 - . logic_name=eponine scaffold_74 . biological_region 343886 343891 0.999 + . logic_name=eponine scaffold_74 . biological_region 343972 343975 0.999 - . logic_name=eponine scaffold_74 . biological_region 344182 344182 0.999 + . logic_name=eponine scaffold_74 . biological_region 344211 344217 0.999 - . logic_name=eponine scaffold_74 . biological_region 344252 344257 0.999 - . logic_name=eponine scaffold_74 . biological_region 344271 344277 0.999 - . logic_name=eponine scaffold_74 . biological_region 344295 344299 0.999 + . logic_name=eponine scaffold_74 . biological_region 344327 344334 0.999 - . logic_name=eponine scaffold_74 . biological_region 344402 344407 0.999 - . logic_name=eponine scaffold_74 . biological_region 344411 344413 0.999 + . logic_name=eponine scaffold_74 . biological_region 344426 344437 0.999 + . logic_name=eponine scaffold_74 . biological_region 344456 344470 0.999 + . logic_name=eponine scaffold_74 . biological_region 344507 344509 0.999 - . logic_name=eponine scaffold_74 . biological_region 344520 344525 0.999 - . logic_name=eponine scaffold_74 . biological_region 344547 344548 0.999 - . logic_name=eponine scaffold_74 . biological_region 344624 344625 0.999 - . logic_name=eponine scaffold_74 . biological_region 344712 344715 0.999 + . logic_name=eponine scaffold_74 . biological_region 344743 344747 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 337136 338761 . - . ID=Physo139491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740062;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 337136 338761 . - . ID=Physo139491;Parent=Physo139491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 337136 338761 . - 0 ID=Physo139491;Parent=Physo139491;rank=1 scaffold_74 . exon 337136 338761 . - . ID=Physo139491.1;Parent=Physo139491;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 339225 342802 . - . ID=Physo139492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740063;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 339225 342802 . - . ID=Physo139492;Parent=Physo139492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 339225 339595 . - 0 ID=Physo139492;Parent=Physo139492;rank=6 scaffold_74 . exon 339225 339595 . - . ID=Physo139492.6;Parent=Physo139492;constitutive=1;ensembl_phase=1;rank=6 scaffold_74 . CDS 339749 339929 . - 0 ID=Physo139492;Parent=Physo139492;rank=5 scaffold_74 . exon 339749 339929 . - . ID=Physo139492.5;Parent=Physo139492;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_74 . CDS 339990 340103 . - 0 ID=Physo139492;Parent=Physo139492;rank=4 scaffold_74 . exon 339990 340103 . - . ID=Physo139492.4;Parent=Physo139492;constitutive=1;rank=4 scaffold_74 . CDS 340182 340412 . - 0 ID=Physo139492;Parent=Physo139492;rank=3 scaffold_74 . exon 340182 340412 . - . ID=Physo139492.3;Parent=Physo139492;constitutive=1;rank=3 scaffold_74 . CDS 340482 341123 . - 0 ID=Physo139492;Parent=Physo139492;rank=2 scaffold_74 . exon 340482 341123 . - . ID=Physo139492.2;Parent=Physo139492;constitutive=1;rank=2 scaffold_74 . CDS 341162 342802 . - 0 ID=Physo139492;Parent=Physo139492;rank=1 scaffold_74 . exon 341162 342802 . - . ID=Physo139492.1;Parent=Physo139492;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 344098 347617 . + . ID=Physo139493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740064;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 344098 347617 . + . ID=Physo139493;Parent=Physo139493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 344098 347538 . + 0 ID=Physo139493;Parent=Physo139493;rank=1 scaffold_74 . exon 344098 347617 . + . ID=Physo139493.1;Parent=Physo139493;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_74 . exon 336986 337087 . + . ID=Physo157988.4;Parent=Physo157988;constitutive=1;rank=4 scaffold_74 . repeat_region 350031 350322 . ? . description=trf scaffold_74 ensembl protein_coding_gene 354223 355513 . + . ID=Physo139495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740066;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 354223 355513 . + . ID=Physo139495;Parent=Physo139495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 354223 354786 . + 0 ID=Physo139495;Parent=Physo139495;rank=1 scaffold_74 . exon 354223 354786 . + . ID=Physo139495.1;Parent=Physo139495;constitutive=1;rank=1 scaffold_74 . CDS 354875 355513 . + 0 ID=Physo139495;Parent=Physo139495;rank=2 scaffold_74 . exon 354875 355513 . + . ID=Physo139495.2;Parent=Physo139495;constitutive=1;rank=2 scaffold_74 ensembl protein_coding_gene 355644 356959 . - . ID=Physo139496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740067;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 355644 356959 . - . ID=Physo139496;Parent=Physo139496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 355644 356746 . - 0 ID=Physo139496;Parent=Physo139496;rank=2 scaffold_74 . exon 355644 356746 . - . ID=Physo139496.2;Parent=Physo139496;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 356857 356932 . - 0 ID=Physo139496;Parent=Physo139496;rank=1 scaffold_74 ensembl protein_coding_gene 350563 353643 . - . ID=Physo157989;biotype=protein_coding;external_name=C_scaffold_74000006;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 350563 353643 . - . ID=Physo157989;Parent=Physo157989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 350563 350658 . - 0 ID=Physo157989;Parent=Physo157989;rank=8 scaffold_74 . exon 350563 350658 . - . ID=Physo157989.8;Parent=Physo157989;constitutive=1;rank=8 scaffold_74 . CDS 350722 351007 . - 0 ID=Physo157989;Parent=Physo157989;rank=7 scaffold_74 . exon 350722 351007 . - . ID=Physo157989.7;Parent=Physo157989;constitutive=1;ensembl_phase=2;rank=7 scaffold_74 . CDS 351467 351696 . - 0 ID=Physo157989;Parent=Physo157989;rank=6 scaffold_74 . exon 351467 351696 . - . ID=Physo157989.6;Parent=Physo157989;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_74 . CDS 351841 352019 . - 0 ID=Physo157989;Parent=Physo157989;rank=5 scaffold_74 . exon 351841 352019 . - . ID=Physo157989.5;Parent=Physo157989;constitutive=1;ensembl_phase=1;rank=5 scaffold_74 . CDS 352062 352182 . - 0 ID=Physo157989;Parent=Physo157989;rank=4 scaffold_74 . exon 352062 352182 . - . ID=Physo157989.4;Parent=Physo157989;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_74 . CDS 352219 352314 . - 0 ID=Physo157989;Parent=Physo157989;rank=3 scaffold_74 . exon 352219 352314 . - . ID=Physo157989.3;Parent=Physo157989;constitutive=1;rank=3 scaffold_74 . CDS 352378 352675 . - 0 ID=Physo157989;Parent=Physo157989;rank=2 scaffold_74 . exon 352378 352675 . - . ID=Physo157989.2;Parent=Physo157989;constitutive=1;ensembl_phase=2;rank=2 scaffold_74 . CDS 352856 353643 . - 0 ID=Physo157989;Parent=Physo157989;rank=1 scaffold_74 . exon 352856 353643 . - . ID=Physo157989.1;Parent=Physo157989;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_74 . biological_region 356868 356876 0.999 + . logic_name=eponine scaffold_74 . biological_region 356909 356912 0.999 - . logic_name=eponine scaffold_74 . biological_region 357911 357912 0.999 - . logic_name=eponine scaffold_74 . biological_region 360599 360603 0.999 + . logic_name=eponine scaffold_74 . biological_region 363227 363229 0.999 - . logic_name=eponine scaffold_74 . biological_region 363284 363287 0.999 + . logic_name=eponine scaffold_74 . biological_region 363472 363478 0.999 - . logic_name=eponine scaffold_74 . biological_region 364693 364695 0.999 + . logic_name=eponine scaffold_74 . biological_region 365181 365181 0.999 + . logic_name=eponine scaffold_74 . biological_region 365320 365324 0.999 - . logic_name=eponine scaffold_74 ensembl protein_coding_gene 362935 363447 . + . ID=Physo109217;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_740006;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 362935 363447 . + . ID=Physo109217;Parent=Physo109217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 362935 363447 . + 0 ID=Physo109217;Parent=Physo109217;rank=1 scaffold_74 . exon 362935 363447 . + . ID=Physo109217.1;Parent=Physo109217;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 363870 365786 . + . ID=Physo109218;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_740007;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 363870 365786 . + . ID=Physo109218;Parent=Physo109218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . exon 363870 365786 . + . ID=Physo109218.1;Parent=Physo109218;constitutive=1;ensembl_phase=-1;rank=1 scaffold_74 . CDS 363906 365786 . + 0 ID=Physo109218;Parent=Physo109218;rank=1 scaffold_74 . exon 356857 356959 . - . ID=Physo139496.1;Parent=Physo139496;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_74 ensembl protein_coding_gene 357822 358957 . + . ID=Physo139497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740068;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 357822 358957 . + . ID=Physo139497;Parent=Physo139497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 357822 357891 . + 0 ID=Physo139497;Parent=Physo139497;rank=1 scaffold_74 . exon 357822 357891 . + . ID=Physo139497.1;Parent=Physo139497;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 357972 358957 . + 0 ID=Physo139497;Parent=Physo139497;rank=2 scaffold_74 . exon 357972 358957 . + . ID=Physo139497.2;Parent=Physo139497;constitutive=1;ensembl_phase=1;rank=2 scaffold_74 ensembl protein_coding_gene 360860 362473 . + . ID=Physo139498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740069;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 360860 362473 . + . ID=Physo139498;Parent=Physo139498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 360860 362473 . + 0 ID=Physo139498;Parent=Physo139498;rank=1 scaffold_74 . exon 360860 362473 . + . ID=Physo139498.1;Parent=Physo139498;constitutive=1;rank=1 scaffold_74 ensembl protein_coding_gene 366547 367517 . + . ID=Physo139501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740072;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 366547 367517 . + . ID=Physo139501;Parent=Physo139501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 366547 366646 . + 0 ID=Physo139501;Parent=Physo139501;rank=1 scaffold_74 . exon 366547 366646 . + . ID=Physo139501.1;Parent=Physo139501;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 . CDS 366764 367419 . + 0 ID=Physo139501;Parent=Physo139501;rank=2 scaffold_74 . exon 366764 367517 . + . ID=Physo139501.2;Parent=Physo139501;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_74 ensembl protein_coding_gene 372257 372810 . - . ID=Physo139502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740073;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 372257 372810 . - . ID=Physo139502;Parent=Physo139502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 372257 372291 . - 0 ID=Physo139502;Parent=Physo139502;rank=3 scaffold_74 . exon 372257 372291 . - . ID=Physo139502.3;Parent=Physo139502;constitutive=1;ensembl_phase=1;rank=3 scaffold_74 . CDS 372333 372374 . - 0 ID=Physo139502;Parent=Physo139502;rank=2 scaffold_74 . exon 372333 372374 . - . ID=Physo139502.2;Parent=Physo139502;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_74 . CDS 372468 372810 . - 0 ID=Physo139502;Parent=Physo139502;rank=1 scaffold_74 . exon 372468 372810 . - . ID=Physo139502.1;Parent=Physo139502;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_74 ensembl protein_coding_gene 375257 377334 . + . ID=Physo139503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_740074;logic_name=jgi_physo1_1 scaffold_74 ensembl transcript 375257 377334 . + . ID=Physo139503;Parent=Physo139503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_74 . CDS 375257 375268 . + 0 ID=Physo139503;Parent=Physo139503;rank=1 scaffold_74 . exon 375257 375268 . + . ID=Physo139503.1;Parent=Physo139503;constitutive=1;rank=1 scaffold_74 . CDS 375623 375685 . + 0 ID=Physo139503;Parent=Physo139503;rank=2 scaffold_74 . exon 375623 375685 . + . ID=Physo139503.2;Parent=Physo139503;constitutive=1;rank=2 scaffold_74 . CDS 375875 376384 . + 0 ID=Physo139503;Parent=Physo139503;rank=3 scaffold_74 . exon 375875 376384 . + . ID=Physo139503.3;Parent=Physo139503;constitutive=1;rank=3 scaffold_74 . CDS 376552 377334 . + 0 ID=Physo139503;Parent=Physo139503;rank=4 scaffold_74 . repeat_region 377309 377596 . + . description=GypsyPi-1c_LTR scaffold_74 . repeat_region 377597 378300 . + . description=GypsyPi-1c_I-int scaffold_74 . repeat_region 384360 384370 . ? . description=dust scaffold_74 . repeat_region 385016 385023 . ? . description=dust scaffold_74 . exon 376552 377334 . + . ID=Physo139503.4;Parent=Physo139503;constitutive=1;rank=4 scaffold_74 . biological_region 389310 389314 0.999 - . logic_name=eponine scaffold_74 . repeat_region 389971 390000 . ? . description=trf scaffold_74 . repeat_region 393528 393586 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_72 1 397359 scaffold_72 . repeat_region 1 308 . ? . description=dust scaffold_72 . repeat_region 3 194 . + . description=(CCCTAA)n scaffold_72 . repeat_region 3 314 . ? . description=trf scaffold_72 . repeat_region 582 590 . ? . description=dust scaffold_72 . repeat_region 830 872 . ? . description=trf scaffold_72 . biological_region 1028 1030 0.999 + . logic_name=eponine scaffold_72 . repeat_region 1153 5949 . ? . description=dust scaffold_72 . repeat_region 5960 8120 . + . description=GypsyPi-1c_I-int scaffold_72 . biological_region 7095 7099 0.999 + . logic_name=eponine scaffold_72 . biological_region 7524 7527 0.999 + . logic_name=eponine scaffold_72 . repeat_region 8249 13516 . ? . description=dust scaffold_72 ensembl protein_coding_gene 6083 8158 . + . ID=Physo139235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720001;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 6083 8158 . + . ID=Physo139235;Parent=Physo139235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 6083 7444 . + 0 ID=Physo139235;Parent=Physo139235;rank=1 scaffold_72 . exon 6083 7444 . + . ID=Physo139235.1;Parent=Physo139235;constitutive=1;rank=1 scaffold_72 . CDS 7495 8110 . + 0 ID=Physo139235;Parent=Physo139235;rank=2 scaffold_72 . exon 7495 8110 . + . ID=Physo139235.2;Parent=Physo139235;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_72 . CDS 8142 8158 . + 0 ID=Physo139235;Parent=Physo139235;rank=3 scaffold_72 . exon 8142 8158 . + . ID=Physo139235.3;Parent=Physo139235;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . repeat_region 14119 24957 . ? . description=dust scaffold_72 . repeat_region 28727 28764 . ? . description=trf scaffold_72 ensembl protein_coding_gene 25263 30794 . + . ID=Physo139236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720002;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 25263 30794 . + . ID=Physo139236;Parent=Physo139236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 25263 25527 . + 0 ID=Physo139236;Parent=Physo139236;rank=1 scaffold_72 . exon 25263 25527 . + . ID=Physo139236.1;Parent=Physo139236;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 25742 25837 . + 0 ID=Physo139236;Parent=Physo139236;rank=2 scaffold_72 . exon 25742 25837 . + . ID=Physo139236.2;Parent=Physo139236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 26056 26754 . + 0 ID=Physo139236;Parent=Physo139236;rank=3 scaffold_72 . exon 26056 26754 . + . ID=Physo139236.3;Parent=Physo139236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 27060 27109 . + 0 ID=Physo139236;Parent=Physo139236;rank=4 scaffold_72 . exon 27060 27109 . + . ID=Physo139236.4;Parent=Physo139236;constitutive=1;ensembl_phase=1;rank=4 scaffold_72 . CDS 27219 27300 . + 0 ID=Physo139236;Parent=Physo139236;rank=5 scaffold_72 . exon 27219 27300 . + . ID=Physo139236.5;Parent=Physo139236;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_72 . CDS 27474 28837 . + 0 ID=Physo139236;Parent=Physo139236;rank=6 scaffold_72 . exon 27474 28837 . + . ID=Physo139236.6;Parent=Physo139236;constitutive=1;ensembl_phase=1;rank=6 scaffold_72 . CDS 29061 29237 . + 0 ID=Physo139236;Parent=Physo139236;rank=7 scaffold_72 . exon 29061 29237 . + . ID=Physo139236.7;Parent=Physo139236;constitutive=1;rank=7 scaffold_72 . CDS 29600 30017 . + 0 ID=Physo139236;Parent=Physo139236;rank=8 scaffold_72 . exon 29600 30017 . + . ID=Physo139236.8;Parent=Physo139236;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_72 . CDS 30272 30696 . + 0 ID=Physo139236;Parent=Physo139236;rank=9 scaffold_72 . CDS 30744 30794 . + 0 ID=Physo139236;Parent=Physo139236;rank=10 scaffold_72 . biological_region 31046 31048 0.999 + . logic_name=eponine scaffold_72 . biological_region 34522 34524 0.999 + . logic_name=eponine scaffold_72 . biological_region 35645 35648 0.999 - . logic_name=eponine scaffold_72 . biological_region 35678 35679 0.999 - . logic_name=eponine scaffold_72 . biological_region 36528 36531 0.999 - . logic_name=eponine scaffold_72 . exon 30272 30696 . + . ID=Physo139236.9;Parent=Physo139236;constitutive=1;ensembl_phase=1;rank=9 scaffold_72 . exon 30744 30794 . + . ID=Physo139236.10;Parent=Physo139236;constitutive=1;rank=10 scaffold_72 ensembl protein_coding_gene 32454 35082 . - . ID=Physo139237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720003;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 32454 35082 . - . ID=Physo139237;Parent=Physo139237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 32454 33461 . - 0 ID=Physo139237;Parent=Physo139237;rank=5 scaffold_72 . exon 32454 33461 . - . ID=Physo139237.5;Parent=Physo139237;constitutive=1;rank=5 scaffold_72 . CDS 33756 33910 . - 0 ID=Physo139237;Parent=Physo139237;rank=4 scaffold_72 . exon 33756 33910 . - . ID=Physo139237.4;Parent=Physo139237;constitutive=1;ensembl_phase=1;rank=4 scaffold_72 . CDS 34097 34331 . - 0 ID=Physo139237;Parent=Physo139237;rank=3 scaffold_72 . exon 34097 34331 . - . ID=Physo139237.3;Parent=Physo139237;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_72 . CDS 34373 34954 . - 0 ID=Physo139237;Parent=Physo139237;rank=2 scaffold_72 . exon 34373 34954 . - . ID=Physo139237.2;Parent=Physo139237;constitutive=1;rank=2 scaffold_72 . CDS 35038 35082 . - 0 ID=Physo139237;Parent=Physo139237;rank=1 scaffold_72 . exon 35038 35082 . - . ID=Physo139237.1;Parent=Physo139237;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 37505 37960 . - . ID=Physo139238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720004;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 37505 37960 . - . ID=Physo139238;Parent=Physo139238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 37505 37960 . - 0 ID=Physo139238;Parent=Physo139238;rank=1 scaffold_72 . exon 37505 37960 . - . ID=Physo139238.1;Parent=Physo139238;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 43019 43800 . + . ID=Physo109192;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_720001;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 43019 43800 . + . ID=Physo109192;Parent=Physo109192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 43019 43800 . + . ID=Physo109192.1;Parent=Physo109192;constitutive=1;ensembl_phase=-1;rank=1 scaffold_72 . CDS 43039 43800 . + 0 ID=Physo109192;Parent=Physo109192;rank=1 scaffold_72 ensembl protein_coding_gene 40462 42553 . - . ID=Physo139239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720005;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 40462 42553 . - . ID=Physo139239;Parent=Physo139239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 40462 40485 . - 0 ID=Physo139239;Parent=Physo139239;rank=2 scaffold_72 . exon 40462 40485 . - . ID=Physo139239.2;Parent=Physo139239;constitutive=1;rank=2 scaffold_72 . CDS 40517 42553 . - 0 ID=Physo139239;Parent=Physo139239;rank=1 scaffold_72 . exon 40517 42553 . - . ID=Physo139239.1;Parent=Physo139239;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 43927 44683 . - . ID=Physo139241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720007;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 43927 44683 . - . ID=Physo139241;Parent=Physo139241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 43927 44683 . - . ID=Physo139241.1;Parent=Physo139241;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_72 . CDS 43928 44683 . - 0 ID=Physo139241;Parent=Physo139241;rank=1 scaffold_72 ensembl protein_coding_gene 46833 47768 . + . ID=Physo139242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720008;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 46833 47768 . + . ID=Physo139242;Parent=Physo139242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 46833 47768 . + 0 ID=Physo139242;Parent=Physo139242;rank=1 scaffold_72 . exon 46833 47768 . + . ID=Physo139242.1;Parent=Physo139242;constitutive=1;rank=1 scaffold_72 . biological_region 50963 50964 0.999 - . logic_name=eponine scaffold_72 . biological_region 51359 51360 0.999 + . logic_name=eponine scaffold_72 . biological_region 51444 51447 0.999 + . logic_name=eponine scaffold_72 . biological_region 51895 51901 0.999 - . logic_name=eponine scaffold_72 . biological_region 51919 51922 0.999 - . logic_name=eponine scaffold_72 . biological_region 52495 52497 0.999 + . logic_name=eponine scaffold_72 . repeat_region 53220 53268 . ? . description=trf scaffold_72 . biological_region 54394 54398 0.999 - . logic_name=eponine scaffold_72 . biological_region 54635 54644 0.999 + . logic_name=eponine scaffold_72 . biological_region 54746 54752 0.999 + . logic_name=eponine scaffold_72 . repeat_region 55041 55103 . ? . description=dust scaffold_72 . biological_region 55082 55088 0.999 + . logic_name=eponine scaffold_72 . biological_region 55126 55133 0.999 - . logic_name=eponine scaffold_72 . biological_region 55147 55154 0.999 - . logic_name=eponine scaffold_72 . biological_region 55469 55474 0.999 + . logic_name=eponine scaffold_72 . biological_region 57095 57100 0.999 + . logic_name=eponine scaffold_72 . biological_region 57711 57711 0.999 + . logic_name=eponine scaffold_72 ensembl protein_coding_gene 49671 51374 . - . ID=Physo139243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720009;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 49671 51374 . - . ID=Physo139243;Parent=Physo139243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 49671 51374 . - 0 ID=Physo139243;Parent=Physo139243;rank=1 scaffold_72 . exon 49671 51374 . - . ID=Physo139243.1;Parent=Physo139243;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 51673 52261 . + . ID=Physo139244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720010;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 51673 52261 . + . ID=Physo139244;Parent=Physo139244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 51673 52182 . + 0 ID=Physo139244;Parent=Physo139244;rank=1 scaffold_72 . exon 51673 52261 . + . ID=Physo139244.1;Parent=Physo139244;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_72 ensembl protein_coding_gene 52542 55130 . - . ID=Physo139245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720011;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 52542 55130 . - . ID=Physo139245;Parent=Physo139245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 52542 55130 . - 0 ID=Physo139245;Parent=Physo139245;rank=1 scaffold_72 . exon 52542 55130 . - . ID=Physo139245.1;Parent=Physo139245;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 56145 58158 . - . ID=Physo139246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720012;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 56145 58158 . - . ID=Physo139246;Parent=Physo139246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 56145 56304 . - 0 ID=Physo139246;Parent=Physo139246;rank=4 scaffold_72 . exon 56145 56304 . - . ID=Physo139246.4;Parent=Physo139246;constitutive=1;ensembl_phase=2;rank=4 scaffold_72 . CDS 56368 56463 . - 0 ID=Physo139246;Parent=Physo139246;rank=3 scaffold_72 . exon 56368 56463 . - . ID=Physo139246.3;Parent=Physo139246;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_72 . CDS 56593 56681 . - 0 ID=Physo139246;Parent=Physo139246;rank=2 scaffold_72 . exon 56593 56681 . - . ID=Physo139246.2;Parent=Physo139246;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_72 . CDS 56773 58158 . - 0 ID=Physo139246;Parent=Physo139246;rank=1 scaffold_72 . exon 56773 58158 . - . ID=Physo139246.1;Parent=Physo139246;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 68419 68748 . - . ID=Physo139247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720013;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 68419 68748 . - . ID=Physo139247;Parent=Physo139247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 68419 68748 . - 0 ID=Physo139247;Parent=Physo139247;rank=1 scaffold_72 . exon 68419 68748 . - . ID=Physo139247.1;Parent=Physo139247;constitutive=1;rank=1 scaffold_72 . biological_region 69780 69780 0.999 - . logic_name=eponine scaffold_72 . biological_region 71068 71068 0.999 + . logic_name=eponine scaffold_72 . repeat_region 72205 72218 . ? . description=dust scaffold_72 . repeat_region 73594 73617 . ? . description=dust scaffold_72 . biological_region 76962 76965 0.999 + . logic_name=eponine scaffold_72 ensembl protein_coding_gene 71334 72131 . + . ID=Physo139248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720014;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 71334 72131 . + . ID=Physo139248;Parent=Physo139248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 71334 71354 . + 0 ID=Physo139248;Parent=Physo139248;rank=1 scaffold_72 . exon 71334 71354 . + . ID=Physo139248.1;Parent=Physo139248;constitutive=1;rank=1 scaffold_72 . CDS 71607 71735 . + 0 ID=Physo139248;Parent=Physo139248;rank=2 scaffold_72 . exon 71607 71735 . + . ID=Physo139248.2;Parent=Physo139248;constitutive=1;rank=2 scaffold_72 . CDS 71755 71933 . + 0 ID=Physo139248;Parent=Physo139248;rank=3 scaffold_72 . exon 71755 71933 . + . ID=Physo139248.3;Parent=Physo139248;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_72 . CDS 71993 72131 . + 0 ID=Physo139248;Parent=Physo139248;rank=4 scaffold_72 . exon 71993 72131 . + . ID=Physo139248.4;Parent=Physo139248;constitutive=1;ensembl_phase=2;rank=4 scaffold_72 ensembl protein_coding_gene 74268 74999 . - . ID=Physo139249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720015;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 74268 74999 . - . ID=Physo139249;Parent=Physo139249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 74268 74999 . - 0 ID=Physo139249;Parent=Physo139249;rank=1 scaffold_72 . exon 74268 74999 . - . ID=Physo139249.1;Parent=Physo139249;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 76311 76700 . + . ID=Physo139250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720016;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 76311 76700 . + . ID=Physo139250;Parent=Physo139250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 76311 76700 . + 0 ID=Physo139250;Parent=Physo139250;rank=1 scaffold_72 . exon 76311 76700 . + . ID=Physo139250.1;Parent=Physo139250;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 76888 78654 . - . ID=Physo139251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720017;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 76888 78654 . - . ID=Physo139251;Parent=Physo139251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 76888 78654 . - 0 ID=Physo139251;Parent=Physo139251;rank=1 scaffold_72 . exon 76888 78654 . - . ID=Physo139251.1;Parent=Physo139251;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 79270 82252 . - . ID=Physo139252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720018;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 79270 82252 . - . ID=Physo139252;Parent=Physo139252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 79270 82252 . - . ID=Physo139252.1;Parent=Physo139252;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_72 . CDS 79364 82252 . - 0 ID=Physo139252;Parent=Physo139252;rank=1 scaffold_72 . repeat_region 85992 86016 . ? . description=trf scaffold_72 . repeat_region 87215 87397 . + . description=GypsyPi-1c_LTR scaffold_72 ensembl protein_coding_gene 85757 86586 . + . ID=Physo139253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720019;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 85757 86586 . + . ID=Physo139253;Parent=Physo139253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 85757 85941 . + 0 ID=Physo139253;Parent=Physo139253;rank=1 scaffold_72 . exon 85757 85941 . + . ID=Physo139253.1;Parent=Physo139253;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 86061 86586 . + 0 ID=Physo139253;Parent=Physo139253;rank=2 scaffold_72 . exon 86061 86586 . + . ID=Physo139253.2;Parent=Physo139253;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 ensembl protein_coding_gene 88949 90868 . + . ID=Physo139254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720020;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 88949 90868 . + . ID=Physo139254;Parent=Physo139254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 88949 89363 . + 0 ID=Physo139254;Parent=Physo139254;rank=1 scaffold_72 . exon 88949 89363 . + . ID=Physo139254.1;Parent=Physo139254;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 89398 89841 . + 0 ID=Physo139254;Parent=Physo139254;rank=2 scaffold_72 . exon 89398 89841 . + . ID=Physo139254.2;Parent=Physo139254;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 89889 90868 . + 0 ID=Physo139254;Parent=Physo139254;rank=3 scaffold_72 . biological_region 94801 94804 0.999 - . logic_name=eponine scaffold_72 . biological_region 95275 95275 0.999 + . logic_name=eponine scaffold_72 . biological_region 98621 98624 0.999 + . logic_name=eponine scaffold_72 . biological_region 99184 99187 0.999 - . logic_name=eponine scaffold_72 . exon 89889 90868 . + . ID=Physo139254.3;Parent=Physo139254;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 ensembl protein_coding_gene 93466 94310 . + . ID=Physo139255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720021;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 93466 94310 . + . ID=Physo139255;Parent=Physo139255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 93466 93663 . + 0 ID=Physo139255;Parent=Physo139255;rank=1 scaffold_72 . exon 93466 93663 . + . ID=Physo139255.1;Parent=Physo139255;constitutive=1;rank=1 scaffold_72 . CDS 93753 94310 . + 0 ID=Physo139255;Parent=Physo139255;rank=2 scaffold_72 . exon 93753 94310 . + . ID=Physo139255.2;Parent=Physo139255;constitutive=1;rank=2 scaffold_72 ensembl protein_coding_gene 95961 99296 . - . ID=Physo139256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720022;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 95961 99296 . - . ID=Physo139256;Parent=Physo139256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 95961 96579 . - 0 ID=Physo139256;Parent=Physo139256;rank=4 scaffold_72 . exon 95961 96579 . - . ID=Physo139256.4;Parent=Physo139256;constitutive=1;ensembl_phase=2;rank=4 scaffold_72 . CDS 96692 98214 . - 0 ID=Physo139256;Parent=Physo139256;rank=3 scaffold_72 . exon 96692 98214 . - . ID=Physo139256.3;Parent=Physo139256;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_72 . CDS 98253 98421 . - 0 ID=Physo139256;Parent=Physo139256;rank=2 scaffold_72 . exon 98253 98421 . - . ID=Physo139256.2;Parent=Physo139256;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 98452 99296 . - 0 ID=Physo139256;Parent=Physo139256;rank=1 scaffold_72 . exon 98452 99296 . - . ID=Physo139256.1;Parent=Physo139256;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . repeat_region 99842 99849 . ? . description=dust scaffold_72 . repeat_region 103402 103429 . ? . description=trf scaffold_72 ensembl protein_coding_gene 100489 102567 . + . ID=Physo139257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720023;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 100489 102567 . + . ID=Physo139257;Parent=Physo139257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 100489 102489 . + 0 ID=Physo139257;Parent=Physo139257;rank=1 scaffold_72 . exon 100489 102567 . + . ID=Physo139257.1;Parent=Physo139257;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_72 ensembl protein_coding_gene 102754 104171 . - . ID=Physo139258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720024;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 102754 104171 . - . ID=Physo139258;Parent=Physo139258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 102754 103799 . - 0 ID=Physo139258;Parent=Physo139258;rank=2 scaffold_72 . exon 102754 103799 . - . ID=Physo139258.3;Parent=Physo139258;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 103908 103950 . - 0 ID=Physo139258;Parent=Physo139258;rank=1 scaffold_72 . exon 103908 104110 . - . ID=Physo139258.2;Parent=Physo139258;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_72 . exon 104167 104171 . - . ID=Physo139258.1;Parent=Physo139258;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_72 ensembl protein_coding_gene 104874 105630 . - . ID=Physo139259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720025;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 104874 105630 . - . ID=Physo139259;Parent=Physo139259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 104874 105505 . - . ID=Physo139259.2;Parent=Physo139259;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_72 . CDS 104883 105505 . - 0 ID=Physo139259;Parent=Physo139259;rank=2 scaffold_72 . CDS 105585 105630 . - 0 ID=Physo139259;Parent=Physo139259;rank=1 scaffold_72 . exon 105585 105630 . - . ID=Physo139259.1;Parent=Physo139259;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 ensembl protein_coding_gene 106972 107721 . + . ID=Physo139261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720027;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 106972 107721 . + . ID=Physo139261;Parent=Physo139261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 106972 107721 . + 0 ID=Physo139261;Parent=Physo139261;rank=1 scaffold_72 . exon 106972 107721 . + . ID=Physo139261.1;Parent=Physo139261;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 107870 110820 . + . ID=Physo139262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720028;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 107870 110820 . + . ID=Physo139262;Parent=Physo139262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 107870 108659 . + 0 ID=Physo139262;Parent=Physo139262;rank=1 scaffold_72 . exon 107870 108659 . + . ID=Physo139262.1;Parent=Physo139262;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 109026 109305 . + 0 ID=Physo139262;Parent=Physo139262;rank=2 scaffold_72 . exon 109026 109305 . + . ID=Physo139262.2;Parent=Physo139262;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_72 . CDS 109365 109644 . + 0 ID=Physo139262;Parent=Physo139262;rank=3 scaffold_72 . CDS 109964 110728 . + 0 ID=Physo139262;Parent=Physo139262;rank=4 scaffold_72 ensembl protein_coding_gene 105939 106757 . + . ID=Physo157965;biotype=protein_coding;external_name=C_scaffold_72000006;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 105939 106757 . + . ID=Physo157965;Parent=Physo157965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 105939 106757 . + 0 ID=Physo157965;Parent=Physo157965;rank=1 scaffold_72 . exon 105939 106757 . + . ID=Physo157965.1;Parent=Physo157965;constitutive=1;rank=1 scaffold_72 . biological_region 111893 111896 0.999 + . logic_name=eponine scaffold_72 . biological_region 112499 112501 0.999 + . logic_name=eponine scaffold_72 . biological_region 114411 114415 0.999 - . logic_name=eponine scaffold_72 . biological_region 115757 115760 0.999 - . logic_name=eponine scaffold_72 . biological_region 116075 116076 0.999 + . logic_name=eponine scaffold_72 . biological_region 116287 116291 0.999 - . logic_name=eponine scaffold_72 . biological_region 116867 116868 0.999 - . logic_name=eponine scaffold_72 . biological_region 117292 117295 0.999 - . logic_name=eponine scaffold_72 . biological_region 117410 117413 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 111555 112343 . + . ID=Physo109193;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_720002;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 111555 112343 . + . ID=Physo109193;Parent=Physo109193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 111555 111717 . + . ID=Physo109193.1;Parent=Physo109193;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_72 . CDS 111593 111717 . + 0 ID=Physo109193;Parent=Physo109193;rank=1 scaffold_72 . CDS 111797 111845 . + 0 ID=Physo109193;Parent=Physo109193;rank=2 scaffold_72 . exon 111797 112343 . + . ID=Physo109193.2;Parent=Physo109193;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_72 ensembl protein_coding_gene 115561 116442 . + . ID=Physo109194;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_720003;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 115561 116442 . + . ID=Physo109194;Parent=Physo109194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 115561 116442 . + 0 ID=Physo109194;Parent=Physo109194;rank=1 scaffold_72 . exon 115561 116442 . + . ID=Physo109194.1;Parent=Physo109194;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 116646 117596 . - . ID=Physo109195;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_720004;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 116646 117596 . - . ID=Physo109195;Parent=Physo109195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 116646 117596 . - . ID=Physo109195.1;Parent=Physo109195;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_72 . CDS 116997 117473 . - 0 ID=Physo109195;Parent=Physo109195;rank=1 scaffold_72 ensembl protein_coding_gene 114829 115105 . + . ID=Physo120147;biotype=protein_coding;external_name=estExt_Genewise1.C_720075;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 114829 115105 . + . ID=Physo120147;Parent=Physo120147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 114829 114935 . + 0 ID=Physo120147;Parent=Physo120147;rank=1 scaffold_72 . exon 114829 114935 . + . ID=Physo120147.1;Parent=Physo120147;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 115060 115105 . + 0 ID=Physo120147;Parent=Physo120147;rank=2 scaffold_72 . exon 115060 115105 . + . ID=Physo120147.2;Parent=Physo120147;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . exon 109365 109644 . + . ID=Physo139262.3;Parent=Physo139262;constitutive=1;ensembl_phase=2;rank=3 scaffold_72 . exon 109964 110820 . + . ID=Physo139262.4;Parent=Physo139262;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_72 ensembl protein_coding_gene 112910 114523 . - . ID=Physo139264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720030;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 112910 114523 . - . ID=Physo139264;Parent=Physo139264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 112910 114523 . - 0 ID=Physo139264;Parent=Physo139264;rank=1 scaffold_72 . exon 112910 114523 . - . ID=Physo139264.1;Parent=Physo139264;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 112458 112770 . + . ID=Physo157969;biotype=protein_coding;external_name=C_scaffold_72000010;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 112458 112770 . + . ID=Physo157969;Parent=Physo157969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 112458 112651 . + 0 ID=Physo157969;Parent=Physo157969;rank=1 scaffold_72 . exon 112458 112651 . + . ID=Physo157969.1;Parent=Physo157969;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 112722 112770 . + 0 ID=Physo157969;Parent=Physo157969;rank=2 scaffold_72 . exon 112722 112770 . + . ID=Physo157969.2;Parent=Physo157969;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . repeat_region 122018 122026 . ? . description=dust scaffold_72 ensembl protein_coding_gene 123436 123947 . + . ID=Physo139267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720033;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 123436 123947 . + . ID=Physo139267;Parent=Physo139267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 123436 123664 . + 0 ID=Physo139267;Parent=Physo139267;rank=1 scaffold_72 . exon 123436 123664 . + . ID=Physo139267.1;Parent=Physo139267;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 123733 123947 . + 0 ID=Physo139267;Parent=Physo139267;rank=2 scaffold_72 . exon 123733 123947 . + . ID=Physo139267.2;Parent=Physo139267;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 ensembl protein_coding_gene 128809 130107 . + . ID=Physo139268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720034;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 128809 130107 . + . ID=Physo139268;Parent=Physo139268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 128809 129126 . + 0 ID=Physo139268;Parent=Physo139268;rank=1 scaffold_72 . exon 128809 129126 . + . ID=Physo139268.1;Parent=Physo139268;constitutive=1;rank=1 scaffold_72 . CDS 129267 129858 . + 0 ID=Physo139268;Parent=Physo139268;rank=2 scaffold_72 . CDS 129950 130107 . + 0 ID=Physo139268;Parent=Physo139268;rank=3 scaffold_72 . exon 129267 129858 . + . ID=Physo139268.2;Parent=Physo139268;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_72 . exon 129950 130107 . + . ID=Physo139268.3;Parent=Physo139268;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . biological_region 139963 139966 0.999 - . logic_name=eponine scaffold_72 . repeat_region 140148 140201 . ? . description=dust scaffold_72 . repeat_region 140411 140434 . ? . description=trf scaffold_72 . repeat_region 141311 141328 . ? . description=dust scaffold_72 . repeat_region 142631 142638 . ? . description=dust scaffold_72 . repeat_region 142904 142947 . ? . description=trf scaffold_72 . biological_region 145108 145110 0.999 + . logic_name=eponine scaffold_72 . biological_region 145156 145156 0.999 + . logic_name=eponine scaffold_72 . repeat_region 145199 145249 . ? . description=trf scaffold_72 . repeat_region 145883 145890 . ? . description=dust scaffold_72 . repeat_region 148031 148044 . ? . description=dust scaffold_72 . biological_region 148484 148487 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 152274 155930 . + . ID=Physo139269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720035;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 152274 155930 . + . ID=Physo139269;Parent=Physo139269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 152274 152276 . + 0 ID=Physo139269;Parent=Physo139269;rank=1 scaffold_72 . exon 152274 152276 . + . ID=Physo139269.1;Parent=Physo139269;constitutive=1;rank=1 scaffold_72 . CDS 152356 152490 . + 0 ID=Physo139269;Parent=Physo139269;rank=2 scaffold_72 . exon 152356 152490 . + . ID=Physo139269.2;Parent=Physo139269;constitutive=1;rank=2 scaffold_72 . CDS 152576 153260 . + 0 ID=Physo139269;Parent=Physo139269;rank=3 scaffold_72 . exon 152576 153260 . + . ID=Physo139269.3;Parent=Physo139269;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_72 . CDS 153313 153495 . + 0 ID=Physo139269;Parent=Physo139269;rank=4 scaffold_72 . exon 153313 153495 . + . ID=Physo139269.4;Parent=Physo139269;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_72 . CDS 153570 153943 . + 0 ID=Physo139269;Parent=Physo139269;rank=5 scaffold_72 . exon 153570 153943 . + . ID=Physo139269.5;Parent=Physo139269;constitutive=1;ensembl_phase=1;rank=5 scaffold_72 . CDS 153975 154674 . + 0 ID=Physo139269;Parent=Physo139269;rank=6 scaffold_72 . exon 153975 154674 . + . ID=Physo139269.6;Parent=Physo139269;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_72 . CDS 154792 155930 . + 0 ID=Physo139269;Parent=Physo139269;rank=7 scaffold_72 . exon 154792 155930 . + . ID=Physo139269.7;Parent=Physo139269;constitutive=1;ensembl_phase=1;rank=7 scaffold_72 ensembl protein_coding_gene 156248 157261 . - . ID=Physo139270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720036;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 156248 157261 . - . ID=Physo139270;Parent=Physo139270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 156248 156928 . - 0 ID=Physo139270;Parent=Physo139270;rank=2 scaffold_72 . exon 156248 156928 . - . ID=Physo139270.2;Parent=Physo139270;constitutive=1;rank=2 scaffold_72 . CDS 156968 157261 . - 0 ID=Physo139270;Parent=Physo139270;rank=1 scaffold_72 . exon 156968 157261 . - . ID=Physo139270.1;Parent=Physo139270;constitutive=1;rank=1 scaffold_72 . biological_region 162801 162804 0.999 + . logic_name=eponine scaffold_72 . repeat_region 165145 169573 . ? . description=dust scaffold_72 ensembl protein_coding_gene 159125 161594 . - . ID=Physo139271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720037;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 159125 161594 . - . ID=Physo139271;Parent=Physo139271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 159125 159359 . - 0 ID=Physo139271;Parent=Physo139271;rank=5 scaffold_72 . exon 159125 159359 . - . ID=Physo139271.5;Parent=Physo139271;constitutive=1;ensembl_phase=2;rank=5 scaffold_72 . CDS 159419 160334 . - 0 ID=Physo139271;Parent=Physo139271;rank=4 scaffold_72 . exon 159419 160334 . - . ID=Physo139271.4;Parent=Physo139271;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_72 . CDS 160390 160614 . - 0 ID=Physo139271;Parent=Physo139271;rank=3 scaffold_72 . exon 160390 160614 . - . ID=Physo139271.3;Parent=Physo139271;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 160931 161130 . - 0 ID=Physo139271;Parent=Physo139271;rank=2 scaffold_72 . exon 160931 161130 . - . ID=Physo139271.2;Parent=Physo139271;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 161197 161594 . - 0 ID=Physo139271;Parent=Physo139271;rank=1 scaffold_72 . exon 161197 161594 . - . ID=Physo139271.1;Parent=Physo139271;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 162482 164819 . - . ID=Physo139272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720038;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 162482 164819 . - . ID=Physo139272;Parent=Physo139272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 162482 162674 . - 0 ID=Physo139272;Parent=Physo139272;rank=3 scaffold_72 . exon 162482 162674 . - . ID=Physo139272.3;Parent=Physo139272;constitutive=1;ensembl_phase=2;rank=3 scaffold_72 . CDS 162737 163526 . - 0 ID=Physo139272;Parent=Physo139272;rank=2 scaffold_72 . exon 162737 163526 . - . ID=Physo139272.2;Parent=Physo139272;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_72 . CDS 163556 164819 . - 0 ID=Physo139272;Parent=Physo139272;rank=1 scaffold_72 . exon 163556 164819 . - . ID=Physo139272.1;Parent=Physo139272;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 ensembl protein_coding_gene 175891 179327 . - . ID=Physo139273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720039;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 175891 179327 . - . ID=Physo139273;Parent=Physo139273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 175891 176495 . - 0 ID=Physo139273;Parent=Physo139273;rank=6 scaffold_72 . exon 175891 176495 . - . ID=Physo139273.6;Parent=Physo139273;constitutive=1;ensembl_phase=1;rank=6 scaffold_72 . CDS 176919 177316 . - 0 ID=Physo139273;Parent=Physo139273;rank=5 scaffold_72 . exon 176919 177316 . - . ID=Physo139273.5;Parent=Physo139273;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_72 . CDS 177437 177906 . - 0 ID=Physo139273;Parent=Physo139273;rank=4 scaffold_72 . exon 177437 177906 . - . ID=Physo139273.4;Parent=Physo139273;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_72 . CDS 177970 178263 . - 0 ID=Physo139273;Parent=Physo139273;rank=3 scaffold_72 . exon 177970 178263 . - . ID=Physo139273.3;Parent=Physo139273;constitutive=1;rank=3 scaffold_72 . CDS 178314 178841 . - 0 ID=Physo139273;Parent=Physo139273;rank=2 scaffold_72 . exon 178314 178841 . - . ID=Physo139273.2;Parent=Physo139273;constitutive=1;rank=2 scaffold_72 . CDS 179292 179327 . - 0 ID=Physo139273;Parent=Physo139273;rank=1 scaffold_72 . biological_region 178942 178946 0.999 + . logic_name=eponine scaffold_72 . repeat_region 181259 181308 . ? . description=dust scaffold_72 . repeat_region 184690 184697 . ? . description=dust scaffold_72 . repeat_region 184925 184933 . ? . description=dust scaffold_72 . biological_region 187130 187131 0.999 + . logic_name=eponine scaffold_72 . biological_region 187164 187168 0.999 - . logic_name=eponine scaffold_72 . biological_region 187169 187175 0.999 + . logic_name=eponine scaffold_72 . biological_region 187191 187199 0.999 - . logic_name=eponine scaffold_72 . biological_region 187195 187206 0.999 + . logic_name=eponine scaffold_72 . biological_region 187217 187224 0.999 + . logic_name=eponine scaffold_72 . biological_region 187243 187250 0.999 + . logic_name=eponine scaffold_72 . biological_region 187249 187260 0.999 - . logic_name=eponine scaffold_72 . biological_region 187277 187281 0.999 + . logic_name=eponine scaffold_72 . biological_region 187277 187283 0.999 - . logic_name=eponine scaffold_72 . biological_region 187298 187301 0.999 - . logic_name=eponine scaffold_72 . biological_region 187302 187308 0.999 + . logic_name=eponine scaffold_72 . biological_region 187328 187330 0.999 - . logic_name=eponine scaffold_72 . biological_region 187352 187353 0.999 - . logic_name=eponine scaffold_72 . biological_region 187432 187436 0.999 - . logic_name=eponine scaffold_72 . biological_region 188528 188531 0.999 - . logic_name=eponine scaffold_72 . biological_region 188559 188563 0.999 - . logic_name=eponine scaffold_72 . biological_region 188584 188589 0.999 - . logic_name=eponine scaffold_72 . exon 179292 179327 . - . ID=Physo139273.1;Parent=Physo139273;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 187117 188802 . + . ID=Physo139274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720040;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 187117 188802 . + . ID=Physo139274;Parent=Physo139274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 187117 188802 . + 0 ID=Physo139274;Parent=Physo139274;rank=1 scaffold_72 . exon 187117 188802 . + . ID=Physo139274.1;Parent=Physo139274;constitutive=1;rank=1 scaffold_72 . repeat_region 188820 188846 . ? . description=trf scaffold_72 . repeat_region 189500 189521 . ? . description=trf scaffold_72 . repeat_region 195873 195922 . ? . description=trf scaffold_72 ensembl protein_coding_gene 197475 198865 . - . ID=Physo109196;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_720005;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 197475 198865 . - . ID=Physo109196;Parent=Physo109196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 197475 198865 . - . ID=Physo109196.1;Parent=Physo109196;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_72 . CDS 197586 198836 . - 0 ID=Physo109196;Parent=Physo109196;rank=1 scaffold_72 ensembl protein_coding_gene 189913 192254 . + . ID=Physo139275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720041;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 189913 192254 . + . ID=Physo139275;Parent=Physo139275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 189913 190156 . + 0 ID=Physo139275;Parent=Physo139275;rank=1 scaffold_72 . exon 189913 190156 . + . ID=Physo139275.1;Parent=Physo139275;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 190258 192254 . + 0 ID=Physo139275;Parent=Physo139275;rank=2 scaffold_72 . exon 190258 192254 . + . ID=Physo139275.2;Parent=Physo139275;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 ensembl protein_coding_gene 192441 193967 . - . ID=Physo139276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720042;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 192441 193967 . - . ID=Physo139276;Parent=Physo139276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 192441 193967 . - 0 ID=Physo139276;Parent=Physo139276;rank=1 scaffold_72 . exon 192441 193967 . - . ID=Physo139276.1;Parent=Physo139276;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 195390 197228 . + . ID=Physo139277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720043;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 195390 197228 . + . ID=Physo139277;Parent=Physo139277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 195390 195397 . + 0 ID=Physo139277;Parent=Physo139277;rank=1 scaffold_72 . exon 195390 195397 . + . ID=Physo139277.1;Parent=Physo139277;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 195419 197228 . + 0 ID=Physo139277;Parent=Physo139277;rank=2 scaffold_72 . exon 195419 197228 . + . ID=Physo139277.2;Parent=Physo139277;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . biological_region 199010 199011 0.999 - . logic_name=eponine scaffold_72 . biological_region 199065 199069 0.999 + . logic_name=eponine scaffold_72 . biological_region 201452 201453 0.999 + . logic_name=eponine scaffold_72 . biological_region 201675 201680 0.999 + . logic_name=eponine scaffold_72 . biological_region 201913 201917 0.999 + . logic_name=eponine scaffold_72 . biological_region 201986 201987 0.999 - . logic_name=eponine scaffold_72 . biological_region 202680 202680 0.999 + . logic_name=eponine scaffold_72 . biological_region 202714 202715 0.999 - . logic_name=eponine scaffold_72 . biological_region 204911 204916 0.999 - . logic_name=eponine scaffold_72 . biological_region 205933 205934 0.999 + . logic_name=eponine scaffold_72 . biological_region 205968 205968 0.999 - . logic_name=eponine scaffold_72 . biological_region 206661 206662 0.999 + . logic_name=eponine scaffold_72 . biological_region 206731 206735 0.999 - . logic_name=eponine scaffold_72 . biological_region 206968 206973 0.999 - . logic_name=eponine scaffold_72 . biological_region 207195 207196 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 200219 200970 . + . ID=Physo139279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720045;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 200219 200970 . + . ID=Physo139279;Parent=Physo139279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 200219 200425 . + 0 ID=Physo139279;Parent=Physo139279;rank=1 scaffold_72 . exon 200219 200425 . + . ID=Physo139279.1;Parent=Physo139279;constitutive=1;rank=1 scaffold_72 . CDS 200452 200970 . + 0 ID=Physo139279;Parent=Physo139279;rank=2 scaffold_72 . exon 200452 200970 . + . ID=Physo139279.2;Parent=Physo139279;constitutive=1;rank=2 scaffold_72 ensembl protein_coding_gene 201170 202954 . - . ID=Physo139280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720046;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 201170 202954 . - . ID=Physo139280;Parent=Physo139280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 201170 202954 . - 0 ID=Physo139280;Parent=Physo139280;rank=1 scaffold_72 . exon 201170 202954 . - . ID=Physo139280.1;Parent=Physo139280;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 204804 207477 . + . ID=Physo139281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720047;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 204804 207477 . + . ID=Physo139281;Parent=Physo139281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 204804 204873 . + 0 ID=Physo139281;Parent=Physo139281;rank=1 scaffold_72 . exon 204804 204873 . + . ID=Physo139281.1;Parent=Physo139281;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 205172 205437 . + 0 ID=Physo139281;Parent=Physo139281;rank=2 scaffold_72 . exon 205172 205437 . + . ID=Physo139281.2;Parent=Physo139281;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 205567 207477 . + 0 ID=Physo139281;Parent=Physo139281;rank=3 scaffold_72 . exon 205567 207477 . + . ID=Physo139281.3;Parent=Physo139281;constitutive=1;rank=3 scaffold_72 . repeat_region 213283 213308 . ? . description=trf scaffold_72 . repeat_region 213482 213496 . ? . description=dust scaffold_72 . repeat_region 213655 213663 . ? . description=dust scaffold_72 . repeat_region 213885 213907 . ? . description=trf scaffold_72 ensembl protein_coding_gene 209821 210396 . + . ID=Physo139282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720048;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 209821 210396 . + . ID=Physo139282;Parent=Physo139282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 209821 210396 . + 0 ID=Physo139282;Parent=Physo139282;rank=1 scaffold_72 . exon 209821 210396 . + . ID=Physo139282.1;Parent=Physo139282;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 211015 212925 . - . ID=Physo139283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720049;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 211015 212925 . - . ID=Physo139283;Parent=Physo139283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 211015 212925 . - 0 ID=Physo139283;Parent=Physo139283;rank=1 scaffold_72 . exon 211015 212925 . - . ID=Physo139283.1;Parent=Physo139283;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 213850 214458 . - . ID=Physo139284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720050;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 213850 214458 . - . ID=Physo139284;Parent=Physo139284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 213850 214458 . - 0 ID=Physo139284;Parent=Physo139284;rank=1 scaffold_72 . exon 213850 214458 . - . ID=Physo139284.1;Parent=Physo139284;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 216041 216628 . - . ID=Physo139285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720051;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 216041 216628 . - . ID=Physo139285;Parent=Physo139285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 216041 216628 . - 0 ID=Physo139285;Parent=Physo139285;rank=1 scaffold_72 . exon 216041 216628 . - . ID=Physo139285.1;Parent=Physo139285;constitutive=1;rank=1 scaffold_72 . biological_region 218747 218748 0.999 + . logic_name=eponine scaffold_72 . biological_region 219284 219284 0.999 - . logic_name=eponine scaffold_72 . biological_region 220479 220483 0.999 + . logic_name=eponine scaffold_72 . biological_region 225256 225256 0.999 + . logic_name=eponine scaffold_72 ensembl protein_coding_gene 218628 220529 . + . ID=Physo139286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720052;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 218628 220529 . + . ID=Physo139286;Parent=Physo139286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 218628 219298 . + 0 ID=Physo139286;Parent=Physo139286;rank=1 scaffold_72 . exon 218628 219298 . + . ID=Physo139286.1;Parent=Physo139286;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 219374 219684 . + 0 ID=Physo139286;Parent=Physo139286;rank=2 scaffold_72 . exon 219374 219684 . + . ID=Physo139286.2;Parent=Physo139286;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 219829 220529 . + 0 ID=Physo139286;Parent=Physo139286;rank=3 scaffold_72 . exon 219829 220529 . + . ID=Physo139286.3;Parent=Physo139286;constitutive=1;ensembl_phase=1;rank=3 scaffold_72 . repeat_region 232104 232137 . ? . description=dust scaffold_72 . repeat_region 233699 233739 . ? . description=dust scaffold_72 . repeat_region 233700 233739 . ? . description=trf scaffold_72 ensembl protein_coding_gene 231614 234720 . + . ID=Physo139287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720053;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 231614 234720 . + . ID=Physo139287;Parent=Physo139287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 231614 232091 . + 0 ID=Physo139287;Parent=Physo139287;rank=1 scaffold_72 . exon 231614 232091 . + . ID=Physo139287.1;Parent=Physo139287;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 232184 233789 . + 0 ID=Physo139287;Parent=Physo139287;rank=2 scaffold_72 . exon 232184 233789 . + . ID=Physo139287.2;Parent=Physo139287;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_72 . CDS 233849 233931 . + 0 ID=Physo139287;Parent=Physo139287;rank=3 scaffold_72 . exon 233849 233931 . + . ID=Physo139287.3;Parent=Physo139287;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_72 . CDS 234191 234411 . + 0 ID=Physo139287;Parent=Physo139287;rank=4 scaffold_72 . exon 234191 234538 . + . ID=Physo139287.4;Parent=Physo139287;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_72 . exon 234714 234720 . + . ID=Physo139287.5;Parent=Physo139287;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_72 . biological_region 246425 246429 0.999 - . logic_name=eponine scaffold_72 . biological_region 247974 247974 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 242417 243760 . - . ID=Physo139288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720054;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 242417 243760 . - . ID=Physo139288;Parent=Physo139288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 242417 243760 . - 0 ID=Physo139288;Parent=Physo139288;rank=1 scaffold_72 . exon 242417 243760 . - . ID=Physo139288.1;Parent=Physo139288;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 244094 245898 . - . ID=Physo139289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720055;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 244094 245898 . - . ID=Physo139289;Parent=Physo139289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 244094 245788 . - 0 ID=Physo139289;Parent=Physo139289;rank=2 scaffold_72 . exon 244094 245788 . - . ID=Physo139289.2;Parent=Physo139289;constitutive=1;rank=2 scaffold_72 . CDS 245878 245898 . - 0 ID=Physo139289;Parent=Physo139289;rank=1 scaffold_72 . exon 245878 245898 . - . ID=Physo139289.1;Parent=Physo139289;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 246326 247760 . + . ID=Physo139290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720056;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 246326 247760 . + . ID=Physo139290;Parent=Physo139290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 246326 246514 . + 0 ID=Physo139290;Parent=Physo139290;rank=1 scaffold_72 . exon 246326 246514 . + . ID=Physo139290.1;Parent=Physo139290;constitutive=1;rank=1 scaffold_72 . CDS 246655 247515 . + 0 ID=Physo139290;Parent=Physo139290;rank=2 scaffold_72 . exon 246655 247515 . + . ID=Physo139290.2;Parent=Physo139290;constitutive=1;rank=2 scaffold_72 . CDS 247599 247697 . + 0 ID=Physo139290;Parent=Physo139290;rank=3 scaffold_72 . exon 247599 247760 . + . ID=Physo139290.3;Parent=Physo139290;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_72 . repeat_region 248896 248997 . + . description=Polinton-1_PI scaffold_72 . repeat_region 250420 250427 . ? . description=dust scaffold_72 . repeat_region 254438 254446 . ? . description=dust scaffold_72 . repeat_region 254769 254807 . ? . description=trf scaffold_72 ensembl protein_coding_gene 255784 257543 . - . ID=Physo139291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720057;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 255784 257543 . - . ID=Physo139291;Parent=Physo139291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 255784 256148 . - 0 ID=Physo139291;Parent=Physo139291;rank=6 scaffold_72 . exon 255784 256148 . - . ID=Physo139291.6;Parent=Physo139291;constitutive=1;ensembl_phase=1;rank=6 scaffold_72 . CDS 256246 256538 . - 0 ID=Physo139291;Parent=Physo139291;rank=5 scaffold_72 . exon 256246 256538 . - . ID=Physo139291.5;Parent=Physo139291;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_72 . CDS 256621 256786 . - 0 ID=Physo139291;Parent=Physo139291;rank=4 scaffold_72 . exon 256621 256786 . - . ID=Physo139291.4;Parent=Physo139291;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_72 . CDS 256835 257124 . - 0 ID=Physo139291;Parent=Physo139291;rank=3 scaffold_72 . exon 256835 257124 . - . ID=Physo139291.3;Parent=Physo139291;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_72 . CDS 257186 257271 . - 0 ID=Physo139291;Parent=Physo139291;rank=2 scaffold_72 . exon 257186 257271 . - . ID=Physo139291.2;Parent=Physo139291;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_72 . CDS 257310 257543 . - 0 ID=Physo139291;Parent=Physo139291;rank=1 scaffold_72 . exon 257310 257543 . - . ID=Physo139291.1;Parent=Physo139291;constitutive=1;rank=1 scaffold_72 . biological_region 259050 259051 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 258661 259680 . + . ID=Physo139292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720058;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 258661 259680 . + . ID=Physo139292;Parent=Physo139292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 258661 259680 . + 0 ID=Physo139292;Parent=Physo139292;rank=1 scaffold_72 . exon 258661 259680 . + . ID=Physo139292.1;Parent=Physo139292;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 263536 264318 . - . ID=Physo139293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720059;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 263536 264318 . - . ID=Physo139293;Parent=Physo139293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 263536 264318 . - 0 ID=Physo139293;Parent=Physo139293;rank=1 scaffold_72 . exon 263536 264318 . - . ID=Physo139293.1;Parent=Physo139293;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 267933 268700 . + . ID=Physo139294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720060;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 267933 268700 . + . ID=Physo139294;Parent=Physo139294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 267933 268700 . + 0 ID=Physo139294;Parent=Physo139294;rank=1 scaffold_72 . exon 267933 268700 . + . ID=Physo139294.1;Parent=Physo139294;constitutive=1;rank=1 scaffold_72 . repeat_region 270907 270933 . ? . description=trf scaffold_72 . repeat_region 272827 272834 . ? . description=dust scaffold_72 . repeat_region 274278 274324 . ? . description=trf scaffold_72 ensembl protein_coding_gene 270975 272120 . + . ID=Physo139295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720061;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 270975 272120 . + . ID=Physo139295;Parent=Physo139295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 270975 272120 . + 0 ID=Physo139295;Parent=Physo139295;rank=1 scaffold_72 . exon 270975 272120 . + . ID=Physo139295.1;Parent=Physo139295;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 274429 280472 . + . ID=Physo139296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720062;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 274429 280472 . + . ID=Physo139296;Parent=Physo139296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 274429 274659 . + 0 ID=Physo139296;Parent=Physo139296;rank=1 scaffold_72 . exon 274429 274659 . + . ID=Physo139296.1;Parent=Physo139296;constitutive=1;rank=1 scaffold_72 . CDS 274697 275158 . + 0 ID=Physo139296;Parent=Physo139296;rank=2 scaffold_72 . exon 274697 275158 . + . ID=Physo139296.2;Parent=Physo139296;constitutive=1;rank=2 scaffold_72 . CDS 275241 275801 . + 0 ID=Physo139296;Parent=Physo139296;rank=3 scaffold_72 . exon 275241 275801 . + . ID=Physo139296.3;Parent=Physo139296;constitutive=1;rank=3 scaffold_72 . CDS 275989 276797 . + 0 ID=Physo139296;Parent=Physo139296;rank=4 scaffold_72 . exon 275989 276797 . + . ID=Physo139296.4;Parent=Physo139296;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_72 . CDS 276939 277354 . + 0 ID=Physo139296;Parent=Physo139296;rank=5 scaffold_72 . exon 276939 277354 . + . ID=Physo139296.5;Parent=Physo139296;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_72 . CDS 277421 279307 . + 0 ID=Physo139296;Parent=Physo139296;rank=6 scaffold_72 . exon 277421 279307 . + . ID=Physo139296.6;Parent=Physo139296;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_72 . CDS 279559 280472 . + 0 ID=Physo139296;Parent=Physo139296;rank=7 scaffold_72 . biological_region 280201 280207 0.999 + . logic_name=eponine scaffold_72 . biological_region 280278 280286 0.999 - . logic_name=eponine scaffold_72 . repeat_region 281179 281377 . + . description=Gypsy-1-I_PI-int scaffold_72 . biological_region 281278 281279 0.999 + . logic_name=eponine scaffold_72 . repeat_region 282100 282187 . + . description=Gypsy-1-I_PI-int scaffold_72 . exon 279559 280472 . + . ID=Physo139296.7;Parent=Physo139296;constitutive=1;ensembl_phase=1;rank=7 scaffold_72 ensembl protein_coding_gene 287647 288978 . + . ID=Physo139297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720063;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 287647 288978 . + . ID=Physo139297;Parent=Physo139297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 287647 287742 . + 0 ID=Physo139297;Parent=Physo139297;rank=1 scaffold_72 . exon 287647 287742 . + . ID=Physo139297.1;Parent=Physo139297;constitutive=1;rank=1 scaffold_72 . CDS 287839 288109 . + 0 ID=Physo139297;Parent=Physo139297;rank=2 scaffold_72 . exon 287839 288109 . + . ID=Physo139297.2;Parent=Physo139297;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_72 . CDS 288410 288442 . + 0 ID=Physo139297;Parent=Physo139297;rank=3 scaffold_72 . CDS 288635 288978 . + 0 ID=Physo139297;Parent=Physo139297;rank=4 scaffold_72 . repeat_region 288761 288868 . ? . description=trf scaffold_72 . repeat_region 288770 288825 . ? . description=dust scaffold_72 . repeat_region 289169 289212 . ? . description=dust scaffold_72 . repeat_region 292968 292976 . ? . description=dust scaffold_72 . repeat_region 296892 296920 . ? . description=dust scaffold_72 . repeat_region 297380 297387 . ? . description=dust scaffold_72 ensembl pseudogenic_tRNA 288536 288605 . - . ID=EPrPSOG00000000012;biotype=tRNA_pseudogene;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_72 ensembl transcript 288536 288605 . - . ID=EPrPSOT00000000012;Parent=EPrPSOG00000000012;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_72 ensembl pseudogenic_tRNA 290179 290250 . + . ID=EPrPSOG00000000117;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_72 ensembl transcript 290179 290250 . + . ID=EPrPSOT00000000117;Parent=EPrPSOG00000000117;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_72 . exon 288536 288605 . - . ID=EPrPSOE00000000012;Parent=EPrPSOT00000000012;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . exon 290179 290250 . + . ID=EPrPSOE00000000117;Parent=EPrPSOT00000000117;constitutive=1;rank=1 scaffold_72 . exon 288410 288442 . + . ID=Physo139297.3;Parent=Physo139297;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_72 . exon 288635 288978 . + . ID=Physo139297.4;Parent=Physo139297;constitutive=1;ensembl_phase=1;rank=4 scaffold_72 ensembl protein_coding_gene 290309 291739 . - . ID=Physo139298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720064;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 290309 291739 . - . ID=Physo139298;Parent=Physo139298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 290309 290594 . - 0 ID=Physo139298;Parent=Physo139298;rank=3 scaffold_72 . exon 290309 290594 . - . ID=Physo139298.3;Parent=Physo139298;constitutive=1;ensembl_phase=2;rank=3 scaffold_72 . CDS 290719 291408 . - 0 ID=Physo139298;Parent=Physo139298;rank=2 scaffold_72 . exon 290719 291408 . - . ID=Physo139298.2;Parent=Physo139298;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_72 . CDS 291488 291690 . - 0 ID=Physo139298;Parent=Physo139298;rank=1 scaffold_72 . exon 291488 291739 . - . ID=Physo139298.1;Parent=Physo139298;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_72 . biological_region 302288 302297 0.999 - . logic_name=eponine scaffold_72 . biological_region 304176 304176 0.999 - . logic_name=eponine scaffold_72 ensembl protein_coding_gene 302931 304241 . + . ID=Physo139299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720065;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 302931 304241 . + . ID=Physo139299;Parent=Physo139299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 302931 304241 . + 0 ID=Physo139299;Parent=Physo139299;rank=1 scaffold_72 . exon 302931 304241 . + . ID=Physo139299.1;Parent=Physo139299;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 304387 304722 . - . ID=Physo139300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720066;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 304387 304722 . - . ID=Physo139300;Parent=Physo139300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 304387 304722 . - 0 ID=Physo139300;Parent=Physo139300;rank=1 scaffold_72 . exon 304387 304722 . - . ID=Physo139300.1;Parent=Physo139300;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 305188 306154 . + . ID=Physo139301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720067;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 305188 306154 . + . ID=Physo139301;Parent=Physo139301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 305188 305493 . + 0 ID=Physo139301;Parent=Physo139301;rank=1 scaffold_72 . exon 305188 305493 . + . ID=Physo139301.1;Parent=Physo139301;constitutive=1;rank=1 scaffold_72 . CDS 305624 306154 . + 0 ID=Physo139301;Parent=Physo139301;rank=2 scaffold_72 . exon 305624 306154 . + . ID=Physo139301.2;Parent=Physo139301;constitutive=1;rank=2 scaffold_72 . repeat_region 314904 314928 . ? . description=dust scaffold_72 . repeat_region 315387 315435 . ? . description=trf scaffold_72 . repeat_region 317315 317359 . ? . description=dust scaffold_72 ensembl protein_coding_gene 308060 308597 . - . ID=Physo139302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720068;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 308060 308597 . - . ID=Physo139302;Parent=Physo139302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 308060 308221 . - 0 ID=Physo139302;Parent=Physo139302;rank=3 scaffold_72 . exon 308060 308221 . - . ID=Physo139302.3;Parent=Physo139302;constitutive=1;rank=3 scaffold_72 . CDS 308281 308331 . - 0 ID=Physo139302;Parent=Physo139302;rank=2 scaffold_72 . exon 308281 308331 . - . ID=Physo139302.2;Parent=Physo139302;constitutive=1;rank=2 scaffold_72 . CDS 308364 308597 . - 0 ID=Physo139302;Parent=Physo139302;rank=1 scaffold_72 . exon 308364 308597 . - . ID=Physo139302.1;Parent=Physo139302;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 310065 311477 . + . ID=Physo139303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720069;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 310065 311477 . + . ID=Physo139303;Parent=Physo139303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 310065 310393 . + 0 ID=Physo139303;Parent=Physo139303;rank=1 scaffold_72 . exon 310065 310393 . + . ID=Physo139303.1;Parent=Physo139303;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 310454 310478 . + 0 ID=Physo139303;Parent=Physo139303;rank=2 scaffold_72 . exon 310454 310478 . + . ID=Physo139303.2;Parent=Physo139303;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 310674 310676 . + 0 ID=Physo139303;Parent=Physo139303;rank=3 scaffold_72 . exon 310674 310676 . + . ID=Physo139303.3;Parent=Physo139303;constitutive=1;rank=3 scaffold_72 . CDS 310911 311477 . + 0 ID=Physo139303;Parent=Physo139303;rank=4 scaffold_72 . exon 310911 311477 . + . ID=Physo139303.4;Parent=Physo139303;constitutive=1;rank=4 scaffold_72 ensembl protein_coding_gene 311568 313838 . + . ID=Physo139304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720070;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 311568 313838 . + . ID=Physo139304;Parent=Physo139304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 311568 312132 . + 0 ID=Physo139304;Parent=Physo139304;rank=1 scaffold_72 . exon 311568 312132 . + . ID=Physo139304.1;Parent=Physo139304;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . CDS 312228 312604 . + 0 ID=Physo139304;Parent=Physo139304;rank=2 scaffold_72 . exon 312228 312604 . + . ID=Physo139304.2;Parent=Physo139304;constitutive=1;ensembl_phase=1;rank=2 scaffold_72 . CDS 312663 312890 . + 0 ID=Physo139304;Parent=Physo139304;rank=3 scaffold_72 . exon 312663 312890 . + . ID=Physo139304.3;Parent=Physo139304;constitutive=1;rank=3 scaffold_72 . CDS 312928 313003 . + 0 ID=Physo139304;Parent=Physo139304;rank=4 scaffold_72 . exon 312928 313003 . + . ID=Physo139304.4;Parent=Physo139304;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_72 . CDS 313069 313322 . + 0 ID=Physo139304;Parent=Physo139304;rank=5 scaffold_72 . exon 313069 313322 . + . ID=Physo139304.5;Parent=Physo139304;constitutive=1;ensembl_phase=1;rank=5 scaffold_72 . CDS 313455 313838 . + 0 ID=Physo139304;Parent=Physo139304;rank=6 scaffold_72 . exon 313455 313838 . + . ID=Physo139304.6;Parent=Physo139304;constitutive=1;rank=6 scaffold_72 ensembl protein_coding_gene 315937 316759 . + . ID=Physo139305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720071;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 315937 316759 . + . ID=Physo139305;Parent=Physo139305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 315937 316359 . + 0 ID=Physo139305;Parent=Physo139305;rank=1 scaffold_72 . exon 315937 316359 . + . ID=Physo139305.1;Parent=Physo139305;constitutive=1;rank=1 scaffold_72 . CDS 316400 316759 . + 0 ID=Physo139305;Parent=Physo139305;rank=2 scaffold_72 . exon 316400 316759 . + . ID=Physo139305.2;Parent=Physo139305;constitutive=1;rank=2 scaffold_72 . biological_region 320277 320281 0.999 - . logic_name=eponine scaffold_72 . biological_region 320638 320640 0.999 - . logic_name=eponine scaffold_72 . biological_region 321440 321445 0.999 + . logic_name=eponine scaffold_72 . biological_region 321479 321480 0.999 + . logic_name=eponine scaffold_72 . biological_region 323818 323821 0.999 + . logic_name=eponine scaffold_72 . biological_region 323953 323955 0.999 + . logic_name=eponine scaffold_72 . biological_region 324150 324153 0.999 - . logic_name=eponine scaffold_72 . biological_region 324205 324208 0.999 + . logic_name=eponine scaffold_72 . biological_region 324632 324639 0.999 + . logic_name=eponine scaffold_72 . biological_region 324659 324661 0.999 + . logic_name=eponine scaffold_72 . biological_region 324746 324749 0.999 - . logic_name=eponine scaffold_72 . biological_region 324756 324759 0.999 + . logic_name=eponine scaffold_72 . biological_region 324910 324912 0.999 - . logic_name=eponine scaffold_72 . biological_region 324966 324969 0.999 + . logic_name=eponine scaffold_72 . biological_region 324990 324997 0.999 + . logic_name=eponine scaffold_72 . biological_region 325181 325186 0.999 + . logic_name=eponine scaffold_72 . biological_region 325339 325345 0.999 + . logic_name=eponine scaffold_72 . biological_region 325508 325509 0.999 + . logic_name=eponine scaffold_72 . biological_region 325536 325540 0.999 + . logic_name=eponine scaffold_72 . biological_region 325762 325764 0.999 - . logic_name=eponine scaffold_72 . biological_region 326054 326056 0.999 + . logic_name=eponine scaffold_72 . biological_region 326096 326098 0.999 + . logic_name=eponine scaffold_72 . biological_region 326134 326141 0.999 - . logic_name=eponine scaffold_72 . biological_region 326190 326195 0.999 + . logic_name=eponine scaffold_72 . biological_region 326243 326248 0.999 + . logic_name=eponine scaffold_72 . biological_region 326289 326297 0.999 - . logic_name=eponine scaffold_72 . biological_region 326356 326356 0.999 - . logic_name=eponine scaffold_72 . biological_region 326368 326368 0.999 + . logic_name=eponine scaffold_72 ensembl snRNA_gene 326624 326767 . - . ID=EPrPSOG00000000183;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_72 ensembl snRNA 326624 326767 . - . ID=EPrPSOT00000000183;Parent=EPrPSOG00000000183;biotype=snRNA;logic_name=ncrna_eg scaffold_72 . exon 326624 326767 . - . ID=EPrPSOE00000000183;Parent=EPrPSOT00000000183;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 320149 321201 . - . ID=Physo139306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720072;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 320149 321201 . - . ID=Physo139306;Parent=Physo139306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 320149 320713 . - 0 ID=Physo139306;Parent=Physo139306;rank=2 scaffold_72 . exon 320149 320713 . - . ID=Physo139306.2;Parent=Physo139306;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 320819 321201 . - 0 ID=Physo139306;Parent=Physo139306;rank=1 scaffold_72 . exon 320819 321201 . - . ID=Physo139306.1;Parent=Physo139306;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 323600 329437 . - . ID=Physo139307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720073;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 323600 329437 . - . ID=Physo139307;Parent=Physo139307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 323600 324145 . - 0 ID=Physo139307;Parent=Physo139307;rank=8 scaffold_72 . exon 323600 324145 . - . ID=Physo139307.8;Parent=Physo139307;constitutive=1;rank=8 scaffold_72 . CDS 324195 324803 . - 0 ID=Physo139307;Parent=Physo139307;rank=7 scaffold_72 . exon 324195 324803 . - . ID=Physo139307.7;Parent=Physo139307;constitutive=1;rank=7 scaffold_72 . CDS 325018 325262 . - 0 ID=Physo139307;Parent=Physo139307;rank=6 scaffold_72 . exon 325018 325262 . - . ID=Physo139307.6;Parent=Physo139307;constitutive=1;ensembl_phase=1;rank=6 scaffold_72 . CDS 325297 325753 . - 0 ID=Physo139307;Parent=Physo139307;rank=5 scaffold_72 . exon 325297 325753 . - . ID=Physo139307.5;Parent=Physo139307;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_72 . CDS 325888 326468 . - 0 ID=Physo139307;Parent=Physo139307;rank=4 scaffold_72 . exon 325888 326468 . - . ID=Physo139307.4;Parent=Physo139307;constitutive=1;ensembl_phase=1;rank=4 scaffold_72 . CDS 326924 328126 . - 0 ID=Physo139307;Parent=Physo139307;rank=3 scaffold_72 . exon 326924 328126 . - . ID=Physo139307.3;Parent=Physo139307;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_72 . CDS 328209 328769 . - 0 ID=Physo139307;Parent=Physo139307;rank=2 scaffold_72 . CDS 328798 329437 . - 0 ID=Physo139307;Parent=Physo139307;rank=1 scaffold_72 . repeat_region 329768 329857 . ? . description=trf scaffold_72 . repeat_region 332181 332189 . ? . description=dust scaffold_72 . repeat_region 334221 334270 . ? . description=dust scaffold_72 . repeat_region 334404 334535 . ? . description=trf scaffold_72 . repeat_region 335381 336016 . ? . description=dust scaffold_72 ensembl snRNA_gene 329485 329674 . - . ID=EPrPSOG00000000071;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_72 ensembl snRNA 329485 329674 . - . ID=EPrPSOT00000000071;Parent=EPrPSOG00000000071;biotype=snRNA;logic_name=ncrna_eg scaffold_72 ensembl snRNA_gene 334607 334751 . - . ID=EPrPSOG00000000146;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_72 ensembl snRNA 334607 334751 . - . ID=EPrPSOT00000000146;Parent=EPrPSOG00000000146;biotype=snRNA;logic_name=ncrna_eg scaffold_72 ensembl snRNA_gene 329931 330075 . - . ID=EPrPSOG00000000166;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_72 ensembl snRNA 329931 330075 . - . ID=EPrPSOT00000000166;Parent=EPrPSOG00000000166;biotype=snRNA;logic_name=ncrna_eg scaffold_72 . exon 329485 329674 . - . ID=EPrPSOE00000000071;Parent=EPrPSOT00000000071;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . exon 334607 334751 . - . ID=EPrPSOE00000000146;Parent=EPrPSOT00000000146;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . exon 329931 330075 . - . ID=EPrPSOE00000000166;Parent=EPrPSOT00000000166;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 . exon 328209 328769 . - . ID=Physo139307.2;Parent=Physo139307;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_72 . exon 328798 329437 . - . ID=Physo139307.1;Parent=Physo139307;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 ensembl protein_coding_gene 330270 334216 . - . ID=Physo139308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720074;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 330270 334216 . - . ID=Physo139308;Parent=Physo139308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 330270 331850 . - 0 ID=Physo139308;Parent=Physo139308;rank=3 scaffold_72 . exon 330270 331850 . - . ID=Physo139308.3;Parent=Physo139308;constitutive=1;rank=3 scaffold_72 . CDS 332213 333623 . - 0 ID=Physo139308;Parent=Physo139308;rank=2 scaffold_72 . exon 332213 333623 . - . ID=Physo139308.2;Parent=Physo139308;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 333927 334216 . - 0 ID=Physo139308;Parent=Physo139308;rank=1 scaffold_72 . exon 333927 334216 . - . ID=Physo139308.1;Parent=Physo139308;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 334904 348861 . - . ID=Physo139309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720075;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 334904 348861 . - . ID=Physo139309;Parent=Physo139309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 334904 335355 . - 0 ID=Physo139309;Parent=Physo139309;rank=8 scaffold_72 . exon 334904 335355 . - . ID=Physo139309.8;Parent=Physo139309;constitutive=1;ensembl_phase=1;rank=8 scaffold_72 . CDS 336112 337757 . - 0 ID=Physo139309;Parent=Physo139309;rank=7 scaffold_72 . exon 336112 337757 . - . ID=Physo139309.7;Parent=Physo139309;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_72 . CDS 337854 338174 . - 0 ID=Physo139309;Parent=Physo139309;rank=6 scaffold_72 . CDS 338341 340028 . - 0 ID=Physo139309;Parent=Physo139309;rank=5 scaffold_72 . CDS 342680 346855 . - 0 ID=Physo139309;Parent=Physo139309;rank=4 scaffold_72 . CDS 346907 347710 . - 0 ID=Physo139309;Parent=Physo139309;rank=3 scaffold_72 . CDS 347741 348551 . - 0 ID=Physo139309;Parent=Physo139309;rank=2 scaffold_72 . CDS 348584 348861 . - 0 ID=Physo139309;Parent=Physo139309;rank=1 scaffold_72 . biological_region 337782 337791 0.999 - . logic_name=eponine scaffold_72 . biological_region 338277 338278 0.999 + . logic_name=eponine scaffold_72 . biological_region 338333 338337 0.999 - . logic_name=eponine scaffold_72 . biological_region 338596 338599 0.999 + . logic_name=eponine scaffold_72 . biological_region 339212 339212 0.999 + . logic_name=eponine scaffold_72 . biological_region 339381 339384 0.999 + . logic_name=eponine scaffold_72 . biological_region 339727 339730 0.999 + . logic_name=eponine scaffold_72 . biological_region 342977 342981 0.999 + . logic_name=eponine scaffold_72 . biological_region 343113 343119 0.999 + . logic_name=eponine scaffold_72 . biological_region 343170 343171 0.999 - . logic_name=eponine scaffold_72 . biological_region 343342 343345 0.999 - . logic_name=eponine scaffold_72 . biological_region 343862 343863 0.999 + . logic_name=eponine scaffold_72 . biological_region 343966 343970 0.999 + . logic_name=eponine scaffold_72 . biological_region 343994 343995 0.999 - . logic_name=eponine scaffold_72 . biological_region 344016 344017 0.999 + . logic_name=eponine scaffold_72 . biological_region 344034 344035 0.999 - . logic_name=eponine scaffold_72 . biological_region 344089 344090 0.999 - . logic_name=eponine scaffold_72 . biological_region 344552 344556 0.999 + . logic_name=eponine scaffold_72 . biological_region 344868 344871 0.999 + . logic_name=eponine scaffold_72 . biological_region 345124 345126 0.999 + . logic_name=eponine scaffold_72 . biological_region 345684 345685 0.999 - . logic_name=eponine scaffold_72 . biological_region 345739 345740 0.999 + . logic_name=eponine scaffold_72 . biological_region 345791 345792 0.999 + . logic_name=eponine scaffold_72 . biological_region 345908 345913 0.999 + . logic_name=eponine scaffold_72 . biological_region 346254 346255 0.999 + . logic_name=eponine scaffold_72 . biological_region 346536 346537 0.999 + . logic_name=eponine scaffold_72 . biological_region 346635 346639 0.999 - . logic_name=eponine scaffold_72 . biological_region 346734 346736 0.999 + . logic_name=eponine scaffold_72 . biological_region 346965 346967 0.999 + . logic_name=eponine scaffold_72 . biological_region 346989 346996 0.999 + . logic_name=eponine scaffold_72 . biological_region 347014 347021 0.999 + . logic_name=eponine scaffold_72 . biological_region 347063 347066 0.999 + . logic_name=eponine scaffold_72 . biological_region 347122 347127 0.999 + . logic_name=eponine scaffold_72 . biological_region 347144 347148 0.999 + . logic_name=eponine scaffold_72 . biological_region 347181 347184 0.999 - . logic_name=eponine scaffold_72 . biological_region 347204 347207 0.999 - . logic_name=eponine scaffold_72 . biological_region 347270 347276 0.999 - . logic_name=eponine scaffold_72 . exon 337854 338174 . - . ID=Physo139309.6;Parent=Physo139309;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_72 . exon 338341 340028 . - . ID=Physo139309.5;Parent=Physo139309;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_72 . exon 342680 346855 . - . ID=Physo139309.4;Parent=Physo139309;constitutive=1;rank=4 scaffold_72 . exon 346907 347710 . - . ID=Physo139309.3;Parent=Physo139309;constitutive=1;rank=3 scaffold_72 . repeat_region 350896 350923 . ? . description=trf scaffold_72 . repeat_region 355187 357567 . + . description=GypsyPi-1c_I-int scaffold_72 ensembl protein_coding_gene 334904 348861 . - . ID=Physo139309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720075;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 334904 348861 . - . ID=Physo139309;Parent=Physo139309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 334904 335355 . - 0 ID=Physo139309;Parent=Physo139309;rank=8 scaffold_72 . CDS 336112 337757 . - 0 ID=Physo139309;Parent=Physo139309;rank=7 scaffold_72 . CDS 337854 338174 . - 0 ID=Physo139309;Parent=Physo139309;rank=6 scaffold_72 . CDS 338341 340028 . - 0 ID=Physo139309;Parent=Physo139309;rank=5 scaffold_72 . CDS 342680 346855 . - 0 ID=Physo139309;Parent=Physo139309;rank=4 scaffold_72 . CDS 346907 347710 . - 0 ID=Physo139309;Parent=Physo139309;rank=3 scaffold_72 . CDS 347741 348551 . - 0 ID=Physo139309;Parent=Physo139309;rank=2 scaffold_72 . exon 347741 348551 . - . ID=Physo139309.2;Parent=Physo139309;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 348584 348861 . - 0 ID=Physo139309;Parent=Physo139309;rank=1 scaffold_72 . exon 348584 348861 . - . ID=Physo139309.1;Parent=Physo139309;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 354483 357879 . + . ID=Physo139310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720076;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 354483 357879 . + . ID=Physo139310;Parent=Physo139310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 354483 357832 . + 0 ID=Physo139310;Parent=Physo139310;rank=1 scaffold_72 . exon 354483 357832 . + . ID=Physo139310.1;Parent=Physo139310;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 . CDS 357873 357879 . + 0 ID=Physo139310;Parent=Physo139310;rank=2 scaffold_72 . repeat_region 358650 358734 . ? . description=dust scaffold_72 . biological_region 358949 358953 0.999 + . logic_name=eponine scaffold_72 . biological_region 359134 359142 0.999 + . logic_name=eponine scaffold_72 . biological_region 359235 359237 0.999 - . logic_name=eponine scaffold_72 . repeat_region 359589 359596 . ? . description=dust scaffold_72 . biological_region 361552 361558 0.999 - . logic_name=eponine scaffold_72 . biological_region 366144 366149 0.999 + . logic_name=eponine scaffold_72 . biological_region 366201 366204 0.999 + . logic_name=eponine scaffold_72 . biological_region 366294 366295 0.999 - . logic_name=eponine scaffold_72 . biological_region 366511 366515 0.999 + . logic_name=eponine scaffold_72 . exon 357873 357879 . + . ID=Physo139310.2;Parent=Physo139310;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 ensembl protein_coding_gene 358132 359491 . - . ID=Physo139311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720077;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 358132 359491 . - . ID=Physo139311;Parent=Physo139311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 358132 358447 . - 0 ID=Physo139311;Parent=Physo139311;rank=3 scaffold_72 . exon 358132 358447 . - . ID=Physo139311.3;Parent=Physo139311;constitutive=1;ensembl_phase=2;rank=3 scaffold_72 . CDS 358897 359296 . - 0 ID=Physo139311;Parent=Physo139311;rank=2 scaffold_72 . exon 358897 359296 . - . ID=Physo139311.2;Parent=Physo139311;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_72 . CDS 359347 359491 . - 0 ID=Physo139311;Parent=Physo139311;rank=1 scaffold_72 . exon 359347 359491 . - . ID=Physo139311.1;Parent=Physo139311;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_72 ensembl protein_coding_gene 359924 360822 . + . ID=Physo139312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720078;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 359924 360822 . + . ID=Physo139312;Parent=Physo139312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 359924 360822 . + . ID=Physo139312.1;Parent=Physo139312;constitutive=1;ensembl_phase=-1;rank=1 scaffold_72 . CDS 360058 360822 . + 0 ID=Physo139312;Parent=Physo139312;rank=1 scaffold_72 ensembl protein_coding_gene 360940 362364 . - . ID=Physo139313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720079;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 360940 362364 . - . ID=Physo139313;Parent=Physo139313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 360940 361690 . - 0 ID=Physo139313;Parent=Physo139313;rank=2 scaffold_72 . exon 360940 361690 . - . ID=Physo139313.2;Parent=Physo139313;constitutive=1;ensembl_phase=2;rank=2 scaffold_72 . CDS 361823 362364 . - 0 ID=Physo139313;Parent=Physo139313;rank=1 scaffold_72 . exon 361823 362364 . - . ID=Physo139313.1;Parent=Physo139313;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 364948 365369 . - . ID=Physo139314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720080;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 364948 365369 . - . ID=Physo139314;Parent=Physo139314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 364948 365274 . - 0 ID=Physo139314;Parent=Physo139314;rank=1 scaffold_72 . exon 364948 365369 . - . ID=Physo139314.1;Parent=Physo139314;constitutive=1;ensembl_phase=-1;rank=1 scaffold_72 ensembl protein_coding_gene 365934 366642 . - . ID=Physo139315;biotype=protein_coding;description=Elicitin-like protein SOL2B [Source:UniProtKB/TrEMBL%3BAcc:Q2N057];external_name=estExt_fgenesh1_pg.C_720081;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 365934 366642 . - . ID=Physo139315;Parent=Physo139315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 365934 366642 . - . ID=Physo139315.1;Parent=Physo139315;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_72 . CDS 366114 366593 . - 0 ID=Physo139315;Parent=Physo139315;rank=1 scaffold_72 . repeat_region 368995 369304 . ? . description=trf scaffold_72 . repeat_region 369001 369293 . ? . description=trf scaffold_72 . repeat_region 369272 369409 . ? . description=trf scaffold_72 . repeat_region 369369 369589 . ? . description=trf scaffold_72 ensembl protein_coding_gene 372148 372921 . - . ID=Physo109197;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_720006;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 372148 372921 . - . ID=Physo109197;Parent=Physo109197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 372148 372921 . - 0 ID=Physo109197;Parent=Physo109197;rank=1 scaffold_72 . exon 372148 372921 . - . ID=Physo109197.1;Parent=Physo109197;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 376655 377393 . - . ID=Physo109198;biotype=protein_coding;description=Necrosis-inducing peptideNecrosis-inducing protein [Source:UniProtKB/TrEMBL%3BAcc:Q9AXL8];external_name=NIP;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 376655 377393 . - . ID=Physo109198;Parent=Physo109198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 376655 377368 . - 0 ID=Physo109198;Parent=Physo109198;rank=1 scaffold_72 . exon 376655 377393 . - . ID=Physo109198.1;Parent=Physo109198;constitutive=1;ensembl_phase=-1;rank=1 scaffold_72 ensembl protein_coding_gene 368562 369695 . + . ID=Physo139316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720082;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 368562 369695 . + . ID=Physo139316;Parent=Physo139316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 368562 368952 . + . ID=Physo139316.1;Parent=Physo139316;constitutive=1;ensembl_phase=-1;rank=1 scaffold_72 . CDS 368653 368952 . + 0 ID=Physo139316;Parent=Physo139316;rank=1 scaffold_72 . CDS 368973 369695 . + 0 ID=Physo139316;Parent=Physo139316;rank=2 scaffold_72 . exon 368973 369695 . + . ID=Physo139316.2;Parent=Physo139316;constitutive=1;rank=2 scaffold_72 ensembl protein_coding_gene 370833 371540 . + . ID=Physo139317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720083;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 370833 371540 . + . ID=Physo139317;Parent=Physo139317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 370833 371540 . + 0 ID=Physo139317;Parent=Physo139317;rank=1 scaffold_72 . exon 370833 371540 . + . ID=Physo139317.1;Parent=Physo139317;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 373112 374608 . - . ID=Physo139319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720085;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 373112 374608 . - . ID=Physo139319;Parent=Physo139319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 373112 373594 . - 0 ID=Physo139319;Parent=Physo139319;rank=2 scaffold_72 . exon 373112 373594 . - . ID=Physo139319.2;Parent=Physo139319;constitutive=1;rank=2 scaffold_72 . CDS 373982 374608 . - 0 ID=Physo139319;Parent=Physo139319;rank=1 scaffold_72 . exon 373982 374608 . - . ID=Physo139319.1;Parent=Physo139319;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 375236 375927 . - . ID=Physo139320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720086;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 375236 375927 . - . ID=Physo139320;Parent=Physo139320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 375236 375652 . - 0 ID=Physo139320;Parent=Physo139320;rank=2 scaffold_72 . exon 375236 375652 . - . ID=Physo139320.2;Parent=Physo139320;constitutive=1;rank=2 scaffold_72 . CDS 375688 375927 . - 0 ID=Physo139320;Parent=Physo139320;rank=1 scaffold_72 . exon 375688 375927 . - . ID=Physo139320.1;Parent=Physo139320;constitutive=1;rank=1 scaffold_72 . biological_region 381281 381284 0.999 - . logic_name=eponine scaffold_72 . repeat_region 382613 382662 . ? . description=dust scaffold_72 . biological_region 382747 382750 0.999 + . logic_name=eponine scaffold_72 . biological_region 382853 382861 0.999 - . logic_name=eponine scaffold_72 . biological_region 382931 382933 0.999 + . logic_name=eponine scaffold_72 . biological_region 383043 383048 0.999 + . logic_name=eponine scaffold_72 . biological_region 383151 383158 0.999 - . logic_name=eponine scaffold_72 . biological_region 383839 383842 0.999 + . logic_name=eponine scaffold_72 . biological_region 383950 383954 0.999 - . logic_name=eponine scaffold_72 . biological_region 385926 385929 0.999 + . logic_name=eponine scaffold_72 . biological_region 387157 387163 0.999 + . logic_name=eponine scaffold_72 ensembl protein_coding_gene 378236 378753 . - . ID=Physo109199;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_720008;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 378236 378753 . - . ID=Physo109199;Parent=Physo109199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 378236 378288 . - . ID=Physo109199.3;Parent=Physo109199;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_72 . CDS 378237 378288 . - 0 ID=Physo109199;Parent=Physo109199;rank=3 scaffold_72 . CDS 378376 378393 . - 0 ID=Physo109199;Parent=Physo109199;rank=2 scaffold_72 . exon 378376 378393 . - . ID=Physo109199.2;Parent=Physo109199;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_72 . CDS 378476 378753 . - 0 ID=Physo109199;Parent=Physo109199;rank=1 scaffold_72 . exon 378476 378753 . - . ID=Physo109199.1;Parent=Physo109199;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_72 ensembl protein_coding_gene 379467 380169 . + . ID=Physo109200;biotype=protein_coding;description=Necrosis-inducing-like protein [Source:UniProtKB/TrEMBL%3BAcc:Q8LKK9];external_name=estExt_fgenesh1_pm.C_720009;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 379467 380169 . + . ID=Physo109200;Parent=Physo109200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 379467 379544 . + 0 ID=Physo109200;Parent=Physo109200;rank=1 scaffold_72 . exon 379467 379544 . + . ID=Physo109200.1;Parent=Physo109200;constitutive=1;rank=1 scaffold_72 . CDS 379570 380169 . + 0 ID=Physo109200;Parent=Physo109200;rank=2 scaffold_72 . exon 379570 380169 . + . ID=Physo109200.2;Parent=Physo109200;constitutive=1;rank=2 scaffold_72 ensembl protein_coding_gene 380531 381846 . + . ID=Physo109201;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q8LKK5];external_name=estExt_fgenesh1_pm.C_720010;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 380531 381846 . + . ID=Physo109201;Parent=Physo109201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 380531 380938 . + 0 ID=Physo109201;Parent=Physo109201;rank=1 scaffold_72 . exon 380531 380938 . + . ID=Physo109201.1;Parent=Physo109201;constitutive=1;rank=1 scaffold_72 . CDS 381019 381846 . + 0 ID=Physo109201;Parent=Physo109201;rank=2 scaffold_72 . exon 381019 381846 . + . ID=Physo109201.2;Parent=Physo109201;constitutive=1;rank=2 scaffold_72 ensembl protein_coding_gene 381948 383212 . - . ID=Physo109202;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_720011;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 381948 383212 . - . ID=Physo109202;Parent=Physo109202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 381948 382604 . - 0 ID=Physo109202;Parent=Physo109202;rank=2 scaffold_72 . exon 381948 382604 . - . ID=Physo109202.2;Parent=Physo109202;constitutive=1;rank=2 scaffold_72 . CDS 382685 383212 . - 0 ID=Physo109202;Parent=Physo109202;rank=1 scaffold_72 . exon 382685 383212 . - . ID=Physo109202.1;Parent=Physo109202;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 383655 384816 . - . ID=Physo109203;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_720012;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 383655 384816 . - . ID=Physo109203;Parent=Physo109203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . exon 383655 384816 . - . ID=Physo109203.1;Parent=Physo109203;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_72 . CDS 383731 384816 . - 0 ID=Physo109203;Parent=Physo109203;rank=1 scaffold_72 ensembl protein_coding_gene 385333 386678 . - . ID=Physo109204;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q8LKK8];external_name=estExt_fgenesh1_pm.C_720013;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 385333 386678 . - . ID=Physo109204;Parent=Physo109204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 385333 386190 . - 0 ID=Physo109204;Parent=Physo109204;rank=2 scaffold_72 . exon 385333 386190 . - . ID=Physo109204.2;Parent=Physo109204;constitutive=1;rank=2 scaffold_72 . CDS 386271 386678 . - 0 ID=Physo109204;Parent=Physo109204;rank=1 scaffold_72 . exon 386271 386678 . - . ID=Physo109204.1;Parent=Physo109204;constitutive=1;rank=1 scaffold_72 . repeat_region 388211 388230 . ? . description=trf scaffold_72 . repeat_region 390959 390986 . ? . description=trf scaffold_72 . repeat_region 396293 396312 . ? . description=trf scaffold_72 ensembl snRNA_gene 396775 396963 . + . ID=EPrPSOG00000000245;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_72 ensembl snRNA 396775 396963 . + . ID=EPrPSOT00000000245;Parent=EPrPSOG00000000245;biotype=snRNA;logic_name=ncrna_eg scaffold_72 . exon 396775 396963 . + . ID=EPrPSOE00000000245;Parent=EPrPSOT00000000245;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 388148 388894 . + . ID=Physo139328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720094;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 388148 388894 . + . ID=Physo139328;Parent=Physo139328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 388148 388894 . + 0 ID=Physo139328;Parent=Physo139328;rank=1 scaffold_72 . exon 388148 388894 . + . ID=Physo139328.1;Parent=Physo139328;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 389057 389773 . - . ID=Physo139329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720095;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 389057 389773 . - . ID=Physo139329;Parent=Physo139329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 389057 389773 . - 0 ID=Physo139329;Parent=Physo139329;rank=1 scaffold_72 . exon 389057 389773 . - . ID=Physo139329.1;Parent=Physo139329;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 392237 393013 . - . ID=Physo139330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720096;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 392237 393013 . - . ID=Physo139330;Parent=Physo139330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 392237 393013 . - 0 ID=Physo139330;Parent=Physo139330;rank=1 scaffold_72 . exon 392237 393013 . - . ID=Physo139330.1;Parent=Physo139330;constitutive=1;rank=1 scaffold_72 ensembl protein_coding_gene 393645 396326 . - . ID=Physo139331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_720097;logic_name=jgi_physo1_1 scaffold_72 ensembl transcript 393645 396326 . - . ID=Physo139331;Parent=Physo139331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_72 . CDS 393645 396326 . - 0 ID=Physo139331;Parent=Physo139331;rank=1 scaffold_72 . exon 393645 396326 . - . ID=Physo139331.1;Parent=Physo139331;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_68 1 401309 scaffold_68 . biological_region 651 652 0.999 + . logic_name=eponine scaffold_68 . biological_region 670 672 0.999 + . logic_name=eponine scaffold_68 . biological_region 745 745 0.999 - . logic_name=eponine scaffold_68 . biological_region 801 804 0.999 + . logic_name=eponine scaffold_68 . repeat_region 1295 1562 . - . description=GypsyPi-1c_I-int scaffold_68 . repeat_region 1834 2293 . - . description=GypsyPi-1c_I-int scaffold_68 . repeat_region 2729 4572 . - . description=GypsyPi-1c_I-int scaffold_68 . biological_region 2867 2870 0.999 - . logic_name=eponine scaffold_68 . biological_region 4969 4969 0.999 - . logic_name=eponine scaffold_68 . biological_region 5155 5159 0.999 + . logic_name=eponine scaffold_68 . biological_region 5173 5176 0.999 + . logic_name=eponine scaffold_68 . biological_region 5290 5291 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 2656 5298 . - . ID=Physo138908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680001;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 2656 5298 . - . ID=Physo138908;Parent=Physo138908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 2656 3771 . - 0 ID=Physo138908;Parent=Physo138908;rank=4 scaffold_68 . exon 2656 3771 . - . ID=Physo138908.4;Parent=Physo138908;constitutive=1;rank=4 scaffold_68 . CDS 3899 4543 . - 0 ID=Physo138908;Parent=Physo138908;rank=3 scaffold_68 . exon 3899 4543 . - . ID=Physo138908.3;Parent=Physo138908;constitutive=1;rank=3 scaffold_68 . CDS 4563 4861 . - 0 ID=Physo138908;Parent=Physo138908;rank=2 scaffold_68 . exon 4563 4861 . - . ID=Physo138908.2;Parent=Physo138908;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 5037 5298 . - 0 ID=Physo138908;Parent=Physo138908;rank=1 scaffold_68 . exon 5037 5298 . - . ID=Physo138908.1;Parent=Physo138908;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . repeat_region 12572 12580 . ? . description=dust scaffold_68 ensembl protein_coding_gene 12880 13740 . - . ID=Physo138909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680002;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 12880 13740 . - . ID=Physo138909;Parent=Physo138909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 12880 13566 . - 0 ID=Physo138909;Parent=Physo138909;rank=2 scaffold_68 . exon 12880 13566 . - . ID=Physo138909.2;Parent=Physo138909;constitutive=1;rank=2 scaffold_68 . CDS 13696 13740 . - 0 ID=Physo138909;Parent=Physo138909;rank=1 scaffold_68 . exon 13696 13740 . - . ID=Physo138909.1;Parent=Physo138909;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 18520 21739 . - . ID=Physo138910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680003;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 18520 21739 . - . ID=Physo138910;Parent=Physo138910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 18520 19391 . - 0 ID=Physo138910;Parent=Physo138910;rank=3 scaffold_68 . exon 18520 19391 . - . ID=Physo138910.3;Parent=Physo138910;constitutive=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 19536 20372 . - 0 ID=Physo138910;Parent=Physo138910;rank=2 scaffold_68 . exon 19536 20372 . - . ID=Physo138910.2;Parent=Physo138910;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 20521 21739 . - 0 ID=Physo138910;Parent=Physo138910;rank=1 scaffold_68 . repeat_region 20496 20583 . ? . description=trf scaffold_68 . biological_region 20680 20680 0.999 - . logic_name=eponine scaffold_68 . biological_region 21451 21452 0.999 - . logic_name=eponine scaffold_68 . repeat_region 26696 26799 . ? . description=trf scaffold_68 . exon 20521 21739 . - . ID=Physo138910.1;Parent=Physo138910;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 ensembl protein_coding_gene 22106 23860 . - . ID=Physo138911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680004;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 22106 23860 . - . ID=Physo138911;Parent=Physo138911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 22106 23860 . - 0 ID=Physo138911;Parent=Physo138911;rank=1 scaffold_68 . exon 22106 23860 . - . ID=Physo138911.1;Parent=Physo138911;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 28521 32608 . - . ID=Physo138912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680005;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 28521 32608 . - . ID=Physo138912;Parent=Physo138912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 28521 29061 . - 0 ID=Physo138912;Parent=Physo138912;rank=3 scaffold_68 . exon 28521 29061 . - . ID=Physo138912.3;Parent=Physo138912;constitutive=1;ensembl_phase=2;rank=3 scaffold_68 . CDS 29151 31106 . - 0 ID=Physo138912;Parent=Physo138912;rank=2 scaffold_68 . exon 29151 31106 . - . ID=Physo138912.2;Parent=Physo138912;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_68 . CDS 31173 32608 . - 0 ID=Physo138912;Parent=Physo138912;rank=1 scaffold_68 . repeat_region 38110 38117 . ? . description=dust scaffold_68 . repeat_region 39133 39140 . ? . description=dust scaffold_68 . exon 31173 32608 . - . ID=Physo138912.1;Parent=Physo138912;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 33801 35111 . - . ID=Physo138913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680006;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 33801 35111 . - . ID=Physo138913;Parent=Physo138913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 33801 35111 . - 0 ID=Physo138913;Parent=Physo138913;rank=1 scaffold_68 . exon 33801 35111 . - . ID=Physo138913.1;Parent=Physo138913;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 37371 38764 . - . ID=Physo138914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680007;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 37371 38764 . - . ID=Physo138914;Parent=Physo138914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 37371 38062 . - 0 ID=Physo138914;Parent=Physo138914;rank=3 scaffold_68 . exon 37371 38062 . - . ID=Physo138914.3;Parent=Physo138914;constitutive=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 38125 38393 . - 0 ID=Physo138914;Parent=Physo138914;rank=2 scaffold_68 . exon 38125 38393 . - . ID=Physo138914.2;Parent=Physo138914;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 38472 38764 . - 0 ID=Physo138914;Parent=Physo138914;rank=1 scaffold_68 . exon 38472 38764 . - . ID=Physo138914.1;Parent=Physo138914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . biological_region 39159 39168 0.999 + . logic_name=eponine scaffold_68 . repeat_region 47725 47765 . ? . description=trf scaffold_68 ensembl protein_coding_gene 47728 48210 . - . ID=Physo138915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680008;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 47728 48210 . - . ID=Physo138915;Parent=Physo138915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 47728 48210 . - 0 ID=Physo138915;Parent=Physo138915;rank=1 scaffold_68 . exon 47728 48210 . - . ID=Physo138915.1;Parent=Physo138915;constitutive=1;rank=1 scaffold_68 . repeat_region 50676 50683 . ? . description=dust scaffold_68 . repeat_region 50884 50891 . ? . description=dust scaffold_68 ensembl protein_coding_gene 51514 52641 . + . ID=Physo138916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680009;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 51514 52641 . + . ID=Physo138916;Parent=Physo138916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 51514 51786 . + 0 ID=Physo138916;Parent=Physo138916;rank=1 scaffold_68 . exon 51514 51786 . + . ID=Physo138916.1;Parent=Physo138916;constitutive=1;rank=1 scaffold_68 . CDS 51835 52641 . + 0 ID=Physo138916;Parent=Physo138916;rank=2 scaffold_68 . exon 51835 52641 . + . ID=Physo138916.2;Parent=Physo138916;constitutive=1;rank=2 scaffold_68 ensembl protein_coding_gene 53747 54513 . + . ID=Physo138917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680010;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 53747 54513 . + . ID=Physo138917;Parent=Physo138917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 53747 53770 . + 0 ID=Physo138917;Parent=Physo138917;rank=1 scaffold_68 . exon 53747 53770 . + . ID=Physo138917.1;Parent=Physo138917;constitutive=1;rank=1 scaffold_68 . CDS 53938 54513 . + 0 ID=Physo138917;Parent=Physo138917;rank=2 scaffold_68 . exon 53938 54513 . + . ID=Physo138917.2;Parent=Physo138917;constitutive=1;rank=2 scaffold_68 ensembl protein_coding_gene 56198 58886 . + . ID=Physo138918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680011;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 56198 58886 . + . ID=Physo138918;Parent=Physo138918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 56198 57233 . + 0 ID=Physo138918;Parent=Physo138918;rank=1 scaffold_68 . exon 56198 57233 . + . ID=Physo138918.1;Parent=Physo138918;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . CDS 57573 57775 . + 0 ID=Physo138918;Parent=Physo138918;rank=2 scaffold_68 . exon 57573 57775 . + . ID=Physo138918.2;Parent=Physo138918;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 57927 58622 . + 0 ID=Physo138918;Parent=Physo138918;rank=3 scaffold_68 . exon 57927 58622 . + . ID=Physo138918.3;Parent=Physo138918;constitutive=1;rank=3 scaffold_68 . CDS 58737 58886 . + 0 ID=Physo138918;Parent=Physo138918;rank=4 scaffold_68 . biological_region 64358 64361 0.999 - . logic_name=eponine scaffold_68 . biological_region 66899 66905 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 63668 64411 . - . ID=Physo119873;biotype=protein_coding;external_name=estExt_Genewise1.C_680029;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 63668 64411 . - . ID=Physo119873;Parent=Physo119873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 63668 64185 . - 0 ID=Physo119873;Parent=Physo119873;rank=2 scaffold_68 . exon 63668 64185 . - . ID=Physo119873.2;Parent=Physo119873;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 64201 64411 . - 0 ID=Physo119873;Parent=Physo119873;rank=1 scaffold_68 . exon 64201 64411 . - . ID=Physo119873.1;Parent=Physo119873;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . exon 58737 58886 . + . ID=Physo138918.4;Parent=Physo138918;constitutive=1;rank=4 scaffold_68 ensembl protein_coding_gene 64818 65696 . - . ID=Physo138920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680013;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 64818 65696 . - . ID=Physo138920;Parent=Physo138920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 64818 65696 . - 0 ID=Physo138920;Parent=Physo138920;rank=1 scaffold_68 . exon 64818 65696 . - . ID=Physo138920.1;Parent=Physo138920;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 68518 72144 . - . ID=Physo138921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680014;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 68518 72144 . - . ID=Physo138921;Parent=Physo138921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 68518 72144 . - 0 ID=Physo138921;Parent=Physo138921;rank=1 scaffold_68 . exon 68518 72144 . - . ID=Physo138921.1;Parent=Physo138921;constitutive=1;rank=1 scaffold_68 . repeat_region 68687 68755 . ? . description=trf scaffold_68 ensembl protein_coding_gene 73685 75532 . + . ID=Physo138922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680015;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 73685 75532 . + . ID=Physo138922;Parent=Physo138922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 73685 75532 . + 0 ID=Physo138922;Parent=Physo138922;rank=1 scaffold_68 . exon 73685 75532 . + . ID=Physo138922.1;Parent=Physo138922;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 76400 79901 . - . ID=Physo138923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680016;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 76400 79901 . - . ID=Physo138923;Parent=Physo138923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 76400 76764 . - 0 ID=Physo138923;Parent=Physo138923;rank=4 scaffold_68 . exon 76400 76764 . - . ID=Physo138923.4;Parent=Physo138923;constitutive=1;ensembl_phase=1;rank=4 scaffold_68 . CDS 76816 76926 . - 0 ID=Physo138923;Parent=Physo138923;rank=3 scaffold_68 . exon 76816 76926 . - . ID=Physo138923.3;Parent=Physo138923;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 77438 77557 . - 0 ID=Physo138923;Parent=Physo138923;rank=2 scaffold_68 . exon 77438 77557 . - . ID=Physo138923.2;Parent=Physo138923;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 77822 79901 . - 0 ID=Physo138923;Parent=Physo138923;rank=1 scaffold_68 . exon 77822 79901 . - . ID=Physo138923.1;Parent=Physo138923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . biological_region 78887 78889 0.999 - . logic_name=eponine scaffold_68 . biological_region 79126 79130 0.999 + . logic_name=eponine scaffold_68 . biological_region 79169 79172 0.999 + . logic_name=eponine scaffold_68 . biological_region 79740 79743 0.999 - . logic_name=eponine scaffold_68 . biological_region 79930 79935 0.999 - . logic_name=eponine scaffold_68 . repeat_region 81134 81145 . ? . description=dust scaffold_68 . repeat_region 82422 82471 . ? . description=dust scaffold_68 . biological_region 85830 85832 0.999 - . logic_name=eponine scaffold_68 . repeat_region 85879 85928 . ? . description=dust scaffold_68 . biological_region 86498 86501 0.999 - . logic_name=eponine scaffold_68 . biological_region 86688 86693 0.999 - . logic_name=eponine scaffold_68 . repeat_region 87892 87903 . ? . description=dust scaffold_68 ensembl protein_coding_gene 83343 86659 . - . ID=Physo138924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680017;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 83343 86659 . - . ID=Physo138924;Parent=Physo138924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 83343 83707 . - 0 ID=Physo138924;Parent=Physo138924;rank=6 scaffold_68 . exon 83343 83707 . - . ID=Physo138924.6;Parent=Physo138924;constitutive=1;ensembl_phase=1;rank=6 scaffold_68 . CDS 83759 83869 . - 0 ID=Physo138924;Parent=Physo138924;rank=5 scaffold_68 . exon 83759 83869 . - . ID=Physo138924.5;Parent=Physo138924;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_68 . CDS 84381 84500 . - 0 ID=Physo138924;Parent=Physo138924;rank=4 scaffold_68 . exon 84381 84500 . - . ID=Physo138924.4;Parent=Physo138924;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_68 . CDS 84765 85845 . - 0 ID=Physo138924;Parent=Physo138924;rank=3 scaffold_68 . exon 84765 85845 . - . ID=Physo138924.3;Parent=Physo138924;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_68 . CDS 86027 86473 . - 0 ID=Physo138924;Parent=Physo138924;rank=2 scaffold_68 . exon 86027 86473 . - . ID=Physo138924.2;Parent=Physo138924;constitutive=1;rank=2 scaffold_68 . CDS 86600 86659 . - 0 ID=Physo138924;Parent=Physo138924;rank=1 scaffold_68 . exon 86600 86659 . - . ID=Physo138924.1;Parent=Physo138924;constitutive=1;rank=1 scaffold_68 . repeat_region 88415 88469 . ? . description=trf scaffold_68 . repeat_region 88441 88529 . ? . description=trf scaffold_68 . repeat_region 95564 95630 . + . description=(CAG)n scaffold_68 ensembl protein_coding_gene 94311 95684 . + . ID=Physo138925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680018;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 94311 95684 . + . ID=Physo138925;Parent=Physo138925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 94311 95684 . + 0 ID=Physo138925;Parent=Physo138925;rank=1 scaffold_68 . exon 94311 95684 . + . ID=Physo138925.1;Parent=Physo138925;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 95889 96935 . + . ID=Physo138926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680019;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 95889 96935 . + . ID=Physo138926;Parent=Physo138926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 95889 95916 . + 0 ID=Physo138926;Parent=Physo138926;rank=1 scaffold_68 . exon 95889 95916 . + . ID=Physo138926.1;Parent=Physo138926;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . CDS 96012 96271 . + 0 ID=Physo138926;Parent=Physo138926;rank=2 scaffold_68 . exon 96012 96271 . + . ID=Physo138926.2;Parent=Physo138926;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 96355 96476 . + 0 ID=Physo138926;Parent=Physo138926;rank=3 scaffold_68 . exon 96355 96476 . + . ID=Physo138926.3;Parent=Physo138926;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_68 . CDS 96547 96645 . + 0 ID=Physo138926;Parent=Physo138926;rank=4 scaffold_68 . exon 96547 96645 . + . ID=Physo138926.4;Parent=Physo138926;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_68 . CDS 96725 96935 . + 0 ID=Physo138926;Parent=Physo138926;rank=5 scaffold_68 . exon 96725 96935 . + . ID=Physo138926.5;Parent=Physo138926;constitutive=1;ensembl_phase=2;rank=5 scaffold_68 ensembl protein_coding_gene 97765 98994 . + . ID=Physo138927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680020;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 97765 98994 . + . ID=Physo138927;Parent=Physo138927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 97765 98994 . + 0 ID=Physo138927;Parent=Physo138927;rank=1 scaffold_68 . exon 97765 98994 . + . ID=Physo138927.1;Parent=Physo138927;constitutive=1;rank=1 scaffold_68 . repeat_region 100031 100045 . ? . description=dust scaffold_68 . biological_region 101800 101803 0.999 - . logic_name=eponine scaffold_68 . biological_region 102355 102358 0.999 - . logic_name=eponine scaffold_68 . biological_region 102757 102759 0.999 + . logic_name=eponine scaffold_68 . biological_region 103309 103315 0.999 + . logic_name=eponine scaffold_68 . biological_region 103337 103339 0.999 + . logic_name=eponine scaffold_68 . biological_region 103362 103364 0.999 + . logic_name=eponine scaffold_68 . repeat_region 105425 105442 . ? . description=dust scaffold_68 ensembl protein_coding_gene 99885 100580 . - . ID=Physo138928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680021;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 99885 100580 . - . ID=Physo138928;Parent=Physo138928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 99885 100026 . - 0 ID=Physo138928;Parent=Physo138928;rank=2 scaffold_68 . exon 99885 100026 . - . ID=Physo138928.2;Parent=Physo138928;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 100102 100580 . - 0 ID=Physo138928;Parent=Physo138928;rank=1 scaffold_68 . exon 100102 100580 . - . ID=Physo138928.1;Parent=Physo138928;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 102485 103768 . + . ID=Physo138929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680022;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 102485 103768 . + . ID=Physo138929;Parent=Physo138929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 102485 103768 . + 0 ID=Physo138929;Parent=Physo138929;rank=1 scaffold_68 . exon 102485 103768 . + . ID=Physo138929.1;Parent=Physo138929;constitutive=1;rank=1 scaffold_68 . repeat_region 107518 107693 . ? . description=trf scaffold_68 . repeat_region 110800 110820 . ? . description=trf scaffold_68 . repeat_region 110855 110886 . ? . description=trf scaffold_68 . repeat_region 113969 114009 . ? . description=trf scaffold_68 ensembl protein_coding_gene 113190 114668 . + . ID=Physo138930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680023;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 113190 114668 . + . ID=Physo138930;Parent=Physo138930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 113190 113726 . + 0 ID=Physo138930;Parent=Physo138930;rank=1 scaffold_68 . exon 113190 113726 . + . ID=Physo138930.1;Parent=Physo138930;constitutive=1;rank=1 scaffold_68 . CDS 113805 113963 . + 0 ID=Physo138930;Parent=Physo138930;rank=2 scaffold_68 . exon 113805 113963 . + . ID=Physo138930.2;Parent=Physo138930;constitutive=1;rank=2 scaffold_68 . CDS 114077 114406 . + 0 ID=Physo138930;Parent=Physo138930;rank=3 scaffold_68 . exon 114077 114406 . + . ID=Physo138930.3;Parent=Physo138930;constitutive=1;rank=3 scaffold_68 . CDS 114483 114668 . + 0 ID=Physo138930;Parent=Physo138930;rank=4 scaffold_68 . exon 114483 114668 . + . ID=Physo138930.4;Parent=Physo138930;constitutive=1;rank=4 scaffold_68 ensembl protein_coding_gene 114923 115661 . + . ID=Physo138931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680024;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 114923 115661 . + . ID=Physo138931;Parent=Physo138931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . exon 114923 115016 . + . ID=Physo138931.1;Parent=Physo138931;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_68 . CDS 114925 115016 . + 0 ID=Physo138931;Parent=Physo138931;rank=1 scaffold_68 . CDS 115094 115197 . + 0 ID=Physo138931;Parent=Physo138931;rank=2 scaffold_68 . exon 115094 115197 . + . ID=Physo138931.2;Parent=Physo138931;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 115268 115329 . + 0 ID=Physo138931;Parent=Physo138931;rank=3 scaffold_68 . exon 115268 115329 . + . ID=Physo138931.3;Parent=Physo138931;constitutive=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 115405 115494 . + 0 ID=Physo138931;Parent=Physo138931;rank=4 scaffold_68 . exon 115405 115661 . + . ID=Physo138931.4;Parent=Physo138931;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_68 ensembl protein_coding_gene 116157 117041 . - . ID=Physo138932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680025;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 116157 117041 . - . ID=Physo138932;Parent=Physo138932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 116157 116939 . - 0 ID=Physo138932;Parent=Physo138932;rank=1 scaffold_68 . exon 116157 117041 . - . ID=Physo138932.1;Parent=Physo138932;constitutive=1;ensembl_phase=-1;rank=1 scaffold_68 . biological_region 121899 121899 0.999 + . logic_name=eponine scaffold_68 . biological_region 122710 122711 0.999 + . logic_name=eponine scaffold_68 . biological_region 124561 124561 0.999 - . logic_name=eponine scaffold_68 . biological_region 124911 124912 0.999 - . logic_name=eponine scaffold_68 . repeat_region 125194 125224 . ? . description=dust scaffold_68 . biological_region 126470 126472 0.999 + . logic_name=eponine scaffold_68 . biological_region 126659 126660 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 121423 123435 . + . ID=Physo138933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680026;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 121423 123435 . + . ID=Physo138933;Parent=Physo138933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 121423 123435 . + 0 ID=Physo138933;Parent=Physo138933;rank=1 scaffold_68 . exon 121423 123435 . + . ID=Physo138933.1;Parent=Physo138933;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 124204 127181 . + . ID=Physo138934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680027;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 124204 127181 . + . ID=Physo138934;Parent=Physo138934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . exon 124204 124607 . + . ID=Physo138934.1;Parent=Physo138934;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_68 . CDS 124583 124607 . + 0 ID=Physo138934;Parent=Physo138934;rank=1 scaffold_68 . CDS 124737 125141 . + 0 ID=Physo138934;Parent=Physo138934;rank=2 scaffold_68 . exon 124737 125141 . + . ID=Physo138934.2;Parent=Physo138934;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 125232 125883 . + 0 ID=Physo138934;Parent=Physo138934;rank=3 scaffold_68 . exon 125232 125883 . + . ID=Physo138934.3;Parent=Physo138934;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_68 . CDS 126328 126651 . + 0 ID=Physo138934;Parent=Physo138934;rank=4 scaffold_68 . exon 126328 126651 . + . ID=Physo138934.4;Parent=Physo138934;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_68 . CDS 126839 127181 . + 0 ID=Physo138934;Parent=Physo138934;rank=5 scaffold_68 . exon 126839 127181 . + . ID=Physo138934.5;Parent=Physo138934;constitutive=1;ensembl_phase=2;rank=5 scaffold_68 ensembl protein_coding_gene 131725 132874 . - . ID=Physo138935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680028;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 131725 132874 . - . ID=Physo138935;Parent=Physo138935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 131725 132138 . - 0 ID=Physo138935;Parent=Physo138935;rank=3 scaffold_68 . exon 131725 132138 . - . ID=Physo138935.3;Parent=Physo138935;constitutive=1;rank=3 scaffold_68 . CDS 132252 132520 . - 0 ID=Physo138935;Parent=Physo138935;rank=2 scaffold_68 . exon 132252 132520 . - . ID=Physo138935.2;Parent=Physo138935;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 132574 132874 . - 0 ID=Physo138935;Parent=Physo138935;rank=1 scaffold_68 . exon 132574 132874 . - . ID=Physo138935.1;Parent=Physo138935;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . repeat_region 141871 141878 . ? . description=dust scaffold_68 . biological_region 142320 142322 0.999 - . logic_name=eponine scaffold_68 . biological_region 142351 142353 0.999 - . logic_name=eponine scaffold_68 . biological_region 142778 142780 0.999 + . logic_name=eponine scaffold_68 . repeat_region 143152 143211 . ? . description=trf scaffold_68 . repeat_region 143660 143668 . ? . description=dust scaffold_68 . repeat_region 143922 143930 . ? . description=dust scaffold_68 ensembl protein_coding_gene 137165 137403 . + . ID=Physo119876;biotype=protein_coding;external_name=estExt_Genewise1.C_680032;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 137165 137403 . + . ID=Physo119876;Parent=Physo119876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . exon 137165 137403 . + . ID=Physo119876.1;Parent=Physo119876;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_68 . CDS 137193 137306 . + 0 ID=Physo119876;Parent=Physo119876;rank=1 scaffold_68 ensembl protein_coding_gene 137767 138456 . + . ID=Physo138936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680029;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 137767 138456 . + . ID=Physo138936;Parent=Physo138936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 137767 138456 . + 0 ID=Physo138936;Parent=Physo138936;rank=1 scaffold_68 . exon 137767 138456 . + . ID=Physo138936.1;Parent=Physo138936;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 148328 148591 . - . ID=Physo119877;biotype=protein_coding;external_name=estExt_Genewise1.C_680033;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 148328 148591 . - . ID=Physo119877;Parent=Physo119877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 148328 148546 . - 0 ID=Physo119877;Parent=Physo119877;rank=1 scaffold_68 . exon 148328 148591 . - . ID=Physo119877.1;Parent=Physo119877;constitutive=1;ensembl_phase=-1;rank=1 scaffold_68 ensembl protein_coding_gene 151153 152225 . + . ID=Physo138937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680030;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 151153 152225 . + . ID=Physo138937;Parent=Physo138937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 151153 151306 . + 0 ID=Physo138937;Parent=Physo138937;rank=1 scaffold_68 . exon 151153 151306 . + . ID=Physo138937.1;Parent=Physo138937;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . CDS 151357 152225 . + 0 ID=Physo138937;Parent=Physo138937;rank=2 scaffold_68 . exon 151357 152225 . + . ID=Physo138937.2;Parent=Physo138937;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . repeat_region 157035 157101 . ? . description=dust scaffold_68 . repeat_region 157035 157101 . ? . description=trf scaffold_68 ensembl protein_coding_gene 160196 166519 . + . ID=Physo138938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680031;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 160196 166519 . + . ID=Physo138938;Parent=Physo138938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 160196 160651 . + 0 ID=Physo138938;Parent=Physo138938;rank=1 scaffold_68 . exon 160196 160651 . + . ID=Physo138938.1;Parent=Physo138938;constitutive=1;rank=1 scaffold_68 . CDS 160959 161289 . + 0 ID=Physo138938;Parent=Physo138938;rank=2 scaffold_68 . exon 160959 161289 . + . ID=Physo138938.2;Parent=Physo138938;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_68 . CDS 161364 161367 . + 0 ID=Physo138938;Parent=Physo138938;rank=3 scaffold_68 . exon 161364 161367 . + . ID=Physo138938.3;Parent=Physo138938;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_68 . CDS 161744 161856 . + 0 ID=Physo138938;Parent=Physo138938;rank=4 scaffold_68 . exon 161744 161856 . + . ID=Physo138938.4;Parent=Physo138938;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_68 . CDS 161895 162250 . + 0 ID=Physo138938;Parent=Physo138938;rank=5 scaffold_68 . exon 161895 162250 . + . ID=Physo138938.5;Parent=Physo138938;constitutive=1;ensembl_phase=1;rank=5 scaffold_68 . CDS 162632 163460 . + 0 ID=Physo138938;Parent=Physo138938;rank=6 scaffold_68 . exon 162632 163460 . + . ID=Physo138938.6;Parent=Physo138938;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_68 . CDS 163524 166273 . + 0 ID=Physo138938;Parent=Physo138938;rank=7 scaffold_68 . exon 163524 166273 . + . ID=Physo138938.7;Parent=Physo138938;constitutive=1;ensembl_phase=1;rank=7 scaffold_68 . CDS 166310 166519 . + 0 ID=Physo138938;Parent=Physo138938;rank=8 scaffold_68 . exon 166310 166519 . + . ID=Physo138938.8;Parent=Physo138938;constitutive=1;rank=8 scaffold_68 . biological_region 170775 170779 0.999 + . logic_name=eponine scaffold_68 . biological_region 175759 175760 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 172391 173037 . - . ID=Physo138939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680032;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 172391 173037 . - . ID=Physo138939;Parent=Physo138939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 172391 172445 . - 0 ID=Physo138939;Parent=Physo138939;rank=3 scaffold_68 . exon 172391 172445 . - . ID=Physo138939.3;Parent=Physo138939;constitutive=1;ensembl_phase=2;rank=3 scaffold_68 . CDS 172552 172890 . - 0 ID=Physo138939;Parent=Physo138939;rank=2 scaffold_68 . exon 172552 172890 . - . ID=Physo138939.2;Parent=Physo138939;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_68 . CDS 172949 173037 . - 0 ID=Physo138939;Parent=Physo138939;rank=1 scaffold_68 . exon 172949 173037 . - . ID=Physo138939.1;Parent=Physo138939;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . repeat_region 180895 180905 . ? . description=dust scaffold_68 . repeat_region 182826 182857 . ? . description=trf scaffold_68 ensembl protein_coding_gene 181258 183684 . - . ID=Physo138940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680033;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 181258 183684 . - . ID=Physo138940;Parent=Physo138940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 181258 183684 . - 0 ID=Physo138940;Parent=Physo138940;rank=1 scaffold_68 . exon 181258 183684 . - . ID=Physo138940.1;Parent=Physo138940;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 183861 185325 . + . ID=Physo138941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680034;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 183861 185325 . + . ID=Physo138941;Parent=Physo138941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 183861 184099 . + 0 ID=Physo138941;Parent=Physo138941;rank=1 scaffold_68 . exon 183861 184099 . + . ID=Physo138941.1;Parent=Physo138941;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . CDS 184155 184392 . + 0 ID=Physo138941;Parent=Physo138941;rank=2 scaffold_68 . exon 184155 184392 . + . ID=Physo138941.2;Parent=Physo138941;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 184463 184525 . + 0 ID=Physo138941;Parent=Physo138941;rank=3 scaffold_68 . exon 184463 184525 . + . ID=Physo138941.3;Parent=Physo138941;constitutive=1;rank=3 scaffold_68 . CDS 184594 185201 . + 0 ID=Physo138941;Parent=Physo138941;rank=4 scaffold_68 . exon 184594 185201 . + . ID=Physo138941.4;Parent=Physo138941;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_68 . CDS 185295 185325 . + 0 ID=Physo138941;Parent=Physo138941;rank=5 scaffold_68 . exon 185295 185325 . + . ID=Physo138941.5;Parent=Physo138941;constitutive=1;ensembl_phase=2;rank=5 scaffold_68 . biological_region 191013 191014 0.999 + . logic_name=eponine scaffold_68 . biological_region 191102 191103 0.999 - . logic_name=eponine scaffold_68 . biological_region 191126 191133 0.999 - . logic_name=eponine scaffold_68 . biological_region 191678 191682 0.999 + . logic_name=eponine scaffold_68 . repeat_region 192297 192575 . - . description=GypsyPi-1c_I-int scaffold_68 . biological_region 192349 192349 0.999 + . logic_name=eponine scaffold_68 . repeat_region 192845 195191 . - . description=GypsyPi-1c_I-int scaffold_68 . biological_region 194867 194868 0.999 + . logic_name=eponine scaffold_68 . biological_region 194971 194972 0.999 - . logic_name=eponine scaffold_68 . biological_region 195710 195715 0.999 + . logic_name=eponine scaffold_68 . biological_region 195751 195753 0.999 + . logic_name=eponine scaffold_68 . biological_region 195778 195780 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 189356 190201 . + . ID=Physo109180;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_680001;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 189356 190201 . + . ID=Physo109180;Parent=Physo109180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 189356 190201 . + 0 ID=Physo109180;Parent=Physo109180;rank=1 scaffold_68 . exon 189356 190201 . + . ID=Physo109180.1;Parent=Physo109180;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 187752 189148 . + . ID=Physo138942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680035;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 187752 189148 . + . ID=Physo138942;Parent=Physo138942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 187752 187778 . + 0 ID=Physo138942;Parent=Physo138942;rank=1 scaffold_68 . exon 187752 187778 . + . ID=Physo138942.1;Parent=Physo138942;constitutive=1;rank=1 scaffold_68 . CDS 187874 189148 . + 0 ID=Physo138942;Parent=Physo138942;rank=2 scaffold_68 . exon 187874 189148 . + . ID=Physo138942.2;Parent=Physo138942;constitutive=1;rank=2 scaffold_68 ensembl protein_coding_gene 190766 192280 . + . ID=Physo138944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680037;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 190766 192280 . + . ID=Physo138944;Parent=Physo138944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 190766 192280 . + 0 ID=Physo138944;Parent=Physo138944;rank=1 scaffold_68 . exon 190766 192280 . + . ID=Physo138944.1;Parent=Physo138944;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 192533 197013 . - . ID=Physo138945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680038;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 192533 197013 . - . ID=Physo138945;Parent=Physo138945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 192533 192539 . - 0 ID=Physo138945;Parent=Physo138945;rank=7 scaffold_68 . exon 192533 192539 . - . ID=Physo138945.7;Parent=Physo138945;constitutive=1;ensembl_phase=2;rank=7 scaffold_68 . CDS 192580 193769 . - 0 ID=Physo138945;Parent=Physo138945;rank=6 scaffold_68 . exon 192580 193769 . - . ID=Physo138945.6;Parent=Physo138945;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_68 . CDS 193951 194363 . - 0 ID=Physo138945;Parent=Physo138945;rank=5 scaffold_68 . exon 193951 194363 . - . ID=Physo138945.5;Parent=Physo138945;constitutive=1;ensembl_phase=1;rank=5 scaffold_68 . CDS 194434 195608 . - 0 ID=Physo138945;Parent=Physo138945;rank=4 scaffold_68 . exon 194434 195608 . - . ID=Physo138945.4;Parent=Physo138945;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_68 . CDS 195635 195869 . - 0 ID=Physo138945;Parent=Physo138945;rank=3 scaffold_68 . exon 195635 195869 . - . ID=Physo138945.3;Parent=Physo138945;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_68 . CDS 196108 196766 . - 0 ID=Physo138945;Parent=Physo138945;rank=2 scaffold_68 . CDS 196793 197013 . - 0 ID=Physo138945;Parent=Physo138945;rank=1 scaffold_68 . repeat_region 196016 196065 . ? . description=dust scaffold_68 . repeat_region 197356 197405 . ? . description=dust scaffold_68 . repeat_region 200266 200571 . - . description=GypsyPi-1c_LTR scaffold_68 . repeat_region 201710 201845 . ? . description=trf scaffold_68 . repeat_region 203219 203258 . ? . description=trf scaffold_68 . repeat_region 203219 203268 . ? . description=trf scaffold_68 . repeat_region 204683 204988 . - . description=GypsyPi-1c_LTR scaffold_68 . exon 196108 196766 . - . ID=Physo138945.2;Parent=Physo138945;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_68 . exon 196793 197013 . - . ID=Physo138945.1;Parent=Physo138945;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 199141 199698 . + . ID=Physo138946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680039;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 199141 199698 . + . ID=Physo138946;Parent=Physo138946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 199141 199698 . + 0 ID=Physo138946;Parent=Physo138946;rank=1 scaffold_68 . exon 199141 199698 . + . ID=Physo138946.1;Parent=Physo138946;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 203591 204595 . - . ID=Physo138947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680040;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 203591 204595 . - . ID=Physo138947;Parent=Physo138947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 203591 204595 . - 0 ID=Physo138947;Parent=Physo138947;rank=1 scaffold_68 . exon 203591 204595 . - . ID=Physo138947.1;Parent=Physo138947;constitutive=1;rank=1 scaffold_68 . biological_region 207243 207245 0.999 - . logic_name=eponine scaffold_68 . biological_region 209068 209072 0.999 - . logic_name=eponine scaffold_68 . biological_region 209089 209096 0.999 + . logic_name=eponine scaffold_68 . biological_region 209109 209112 0.999 + . logic_name=eponine scaffold_68 . biological_region 209125 209132 0.999 - . logic_name=eponine scaffold_68 . biological_region 209163 209168 0.999 + . logic_name=eponine scaffold_68 . biological_region 212960 212965 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 206854 209244 . - . ID=Physo138948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680041;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 206854 209244 . - . ID=Physo138948;Parent=Physo138948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 206854 207305 . - 0 ID=Physo138948;Parent=Physo138948;rank=2 scaffold_68 . exon 206854 207305 . - . ID=Physo138948.2;Parent=Physo138948;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 207591 209244 . - 0 ID=Physo138948;Parent=Physo138948;rank=1 scaffold_68 . exon 207591 209244 . - . ID=Physo138948.1;Parent=Physo138948;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 ensembl protein_coding_gene 209425 212106 . - . ID=Physo138949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680042;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 209425 212106 . - . ID=Physo138949;Parent=Physo138949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 209425 210513 . - 0 ID=Physo138949;Parent=Physo138949;rank=2 scaffold_68 . exon 209425 210513 . - . ID=Physo138949.2;Parent=Physo138949;constitutive=1;rank=2 scaffold_68 . CDS 210604 212106 . - 0 ID=Physo138949;Parent=Physo138949;rank=1 scaffold_68 . exon 210604 212106 . - . ID=Physo138949.1;Parent=Physo138949;constitutive=1;rank=1 scaffold_68 . repeat_region 218046 218098 . ? . description=trf scaffold_68 . repeat_region 218173 218188 . ? . description=dust scaffold_68 . repeat_region 218587 218615 . ? . description=trf scaffold_68 . repeat_region 222458 222482 . ? . description=trf scaffold_68 . repeat_region 223966 223977 . ? . description=dust scaffold_68 ensembl protein_coding_gene 218310 219322 . + . ID=Physo138950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680043;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 218310 219322 . + . ID=Physo138950;Parent=Physo138950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . exon 218310 218484 . + . ID=Physo138950.1;Parent=Physo138950;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_68 . CDS 218457 218484 . + 0 ID=Physo138950;Parent=Physo138950;rank=1 scaffold_68 . CDS 218547 218799 . + 0 ID=Physo138950;Parent=Physo138950;rank=2 scaffold_68 . exon 218547 218799 . + . ID=Physo138950.2;Parent=Physo138950;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_68 . CDS 218894 219233 . + 0 ID=Physo138950;Parent=Physo138950;rank=3 scaffold_68 . exon 218894 219251 . + . ID=Physo138950.3;Parent=Physo138950;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_68 . exon 219282 219322 . + . ID=Physo138950.4;Parent=Physo138950;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_68 ensembl protein_coding_gene 223229 224439 . + . ID=Physo138951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680044;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 223229 224439 . + . ID=Physo138951;Parent=Physo138951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 223229 223413 . + 0 ID=Physo138951;Parent=Physo138951;rank=1 scaffold_68 . exon 223229 223413 . + . ID=Physo138951.1;Parent=Physo138951;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . CDS 223461 224439 . + 0 ID=Physo138951;Parent=Physo138951;rank=2 scaffold_68 . exon 223461 224439 . + . ID=Physo138951.2;Parent=Physo138951;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 ensembl protein_coding_gene 224918 227697 . - . ID=Physo138952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680045;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 224918 227697 . - . ID=Physo138952;Parent=Physo138952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 224918 225601 . - 0 ID=Physo138952;Parent=Physo138952;rank=8 scaffold_68 . exon 224918 225601 . - . ID=Physo138952.8;Parent=Physo138952;constitutive=1;rank=8 scaffold_68 . CDS 225625 225898 . - 0 ID=Physo138952;Parent=Physo138952;rank=7 scaffold_68 . CDS 225935 226029 . - 0 ID=Physo138952;Parent=Physo138952;rank=6 scaffold_68 . CDS 226079 226178 . - 0 ID=Physo138952;Parent=Physo138952;rank=5 scaffold_68 . CDS 226203 226227 . - 0 ID=Physo138952;Parent=Physo138952;rank=4 scaffold_68 . CDS 226533 226971 . - 0 ID=Physo138952;Parent=Physo138952;rank=3 scaffold_68 . CDS 227035 227395 . - 0 ID=Physo138952;Parent=Physo138952;rank=2 scaffold_68 . CDS 227456 227697 . - 0 ID=Physo138952;Parent=Physo138952;rank=1 scaffold_68 . biological_region 226199 226200 0.999 - . logic_name=eponine scaffold_68 . biological_region 230190 230193 0.999 - . logic_name=eponine scaffold_68 . biological_region 230913 230917 0.999 + . logic_name=eponine scaffold_68 . biological_region 232336 232340 0.999 - . logic_name=eponine scaffold_68 . exon 225625 225898 . - . ID=Physo138952.7;Parent=Physo138952;constitutive=1;ensembl_phase=2;rank=7 scaffold_68 . exon 225935 226029 . - . ID=Physo138952.6;Parent=Physo138952;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_68 . exon 226079 226178 . - . ID=Physo138952.5;Parent=Physo138952;constitutive=1;ensembl_phase=2;rank=5 scaffold_68 . exon 226203 226227 . - . ID=Physo138952.4;Parent=Physo138952;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_68 . exon 226533 226971 . - . ID=Physo138952.3;Parent=Physo138952;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_68 . exon 227035 227395 . - . ID=Physo138952.2;Parent=Physo138952;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . exon 227456 227697 . - . ID=Physo138952.1;Parent=Physo138952;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 229807 232399 . + . ID=Physo138953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680046;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 229807 232399 . + . ID=Physo138953;Parent=Physo138953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . exon 229807 230552 . + . ID=Physo138953.1;Parent=Physo138953;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_68 . CDS 229850 230552 . + 0 ID=Physo138953;Parent=Physo138953;rank=1 scaffold_68 . CDS 230631 232318 . + 0 ID=Physo138953;Parent=Physo138953;rank=2 scaffold_68 . exon 230631 232399 . + . ID=Physo138953.2;Parent=Physo138953;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_68 . repeat_region 237479 237488 . ? . description=dust scaffold_68 . repeat_region 242732 242739 . ? . description=dust scaffold_68 ensembl protein_coding_gene 235440 235898 . + . ID=Physo138954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680047;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 235440 235898 . + . ID=Physo138954;Parent=Physo138954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 235440 235898 . + 0 ID=Physo138954;Parent=Physo138954;rank=1 scaffold_68 . exon 235440 235898 . + . ID=Physo138954.1;Parent=Physo138954;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 239143 240754 . - . ID=Physo138955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680048;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 239143 240754 . - . ID=Physo138955;Parent=Physo138955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 239143 239532 . - 0 ID=Physo138955;Parent=Physo138955;rank=2 scaffold_68 . exon 239143 239532 . - . ID=Physo138955.2;Parent=Physo138955;constitutive=1;rank=2 scaffold_68 . CDS 239642 240754 . - 0 ID=Physo138955;Parent=Physo138955;rank=1 scaffold_68 . exon 239642 240754 . - . ID=Physo138955.1;Parent=Physo138955;constitutive=1;rank=1 scaffold_68 . repeat_region 248968 249027 . ? . description=trf scaffold_68 . biological_region 252716 252716 0.999 - . logic_name=eponine scaffold_68 . biological_region 252929 252930 0.999 + . logic_name=eponine scaffold_68 . repeat_region 253630 253855 . + . description=GypsyPi-1c_LTR scaffold_68 . repeat_region 253856 257985 . + . description=GypsyPi-1c_I-int scaffold_68 . biological_region 254100 254101 0.999 + . logic_name=eponine scaffold_68 . biological_region 254357 254361 0.999 + . logic_name=eponine scaffold_68 . biological_region 254376 254379 0.999 - . logic_name=eponine scaffold_68 ensembl protein_coding_gene 249123 253657 . - . ID=Physo138956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680049;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 249123 253657 . - . ID=Physo138956;Parent=Physo138956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 249123 249499 . - 0 ID=Physo138956;Parent=Physo138956;rank=8 scaffold_68 . exon 249123 249499 . - . ID=Physo138956.8;Parent=Physo138956;constitutive=1;ensembl_phase=1;rank=8 scaffold_68 . CDS 249568 250168 . - 0 ID=Physo138956;Parent=Physo138956;rank=7 scaffold_68 . exon 249568 250168 . - . ID=Physo138956.7;Parent=Physo138956;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_68 . CDS 250206 250829 . - 0 ID=Physo138956;Parent=Physo138956;rank=6 scaffold_68 . exon 250206 250829 . - . ID=Physo138956.6;Parent=Physo138956;constitutive=1;rank=6 scaffold_68 . CDS 250897 252563 . - 0 ID=Physo138956;Parent=Physo138956;rank=5 scaffold_68 . exon 250897 252563 . - . ID=Physo138956.5;Parent=Physo138956;constitutive=1;ensembl_phase=1;rank=5 scaffold_68 . CDS 252618 252738 . - 0 ID=Physo138956;Parent=Physo138956;rank=4 scaffold_68 . exon 252618 252738 . - . ID=Physo138956.4;Parent=Physo138956;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_68 . CDS 252777 253058 . - 0 ID=Physo138956;Parent=Physo138956;rank=3 scaffold_68 . exon 252777 253058 . - . ID=Physo138956.3;Parent=Physo138956;constitutive=1;rank=3 scaffold_68 . CDS 253122 253539 . - 0 ID=Physo138956;Parent=Physo138956;rank=2 scaffold_68 . exon 253122 253539 . - . ID=Physo138956.2;Parent=Physo138956;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 253632 253657 . - 0 ID=Physo138956;Parent=Physo138956;rank=1 scaffold_68 . exon 253632 253657 . - . ID=Physo138956.1;Parent=Physo138956;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 253943 258849 . + . ID=Physo138957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680050;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 253943 258849 . + . ID=Physo138957;Parent=Physo138957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 253943 254179 . + 0 ID=Physo138957;Parent=Physo138957;rank=1 scaffold_68 . exon 253943 254179 . + . ID=Physo138957.1;Parent=Physo138957;constitutive=1;rank=1 scaffold_68 . CDS 254234 255345 . + 0 ID=Physo138957;Parent=Physo138957;rank=2 scaffold_68 . exon 254234 255345 . + . ID=Physo138957.2;Parent=Physo138957;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_68 . CDS 255481 256752 . + 0 ID=Physo138957;Parent=Physo138957;rank=3 scaffold_68 . CDS 256978 257355 . + 0 ID=Physo138957;Parent=Physo138957;rank=4 scaffold_68 . CDS 257561 257788 . + 0 ID=Physo138957;Parent=Physo138957;rank=5 scaffold_68 . CDS 257836 257968 . + 0 ID=Physo138957;Parent=Physo138957;rank=6 scaffold_68 . CDS 258024 258794 . + 0 ID=Physo138957;Parent=Physo138957;rank=7 scaffold_68 . CDS 258841 258849 . + 0 ID=Physo138957;Parent=Physo138957;rank=8 scaffold_68 . repeat_region 262802 262822 . ? . description=dust scaffold_68 . exon 255481 256752 . + . ID=Physo138957.3;Parent=Physo138957;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_68 . exon 256978 257355 . + . ID=Physo138957.4;Parent=Physo138957;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_68 . exon 257561 257788 . + . ID=Physo138957.5;Parent=Physo138957;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_68 . exon 257836 257968 . + . ID=Physo138957.6;Parent=Physo138957;constitutive=1;ensembl_phase=2;rank=6 scaffold_68 . exon 258024 258794 . + . ID=Physo138957.7;Parent=Physo138957;constitutive=1;rank=7 scaffold_68 . exon 258841 258849 . + . ID=Physo138957.8;Parent=Physo138957;constitutive=1;rank=8 scaffold_68 ensembl protein_coding_gene 259131 261311 . - . ID=Physo138958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680051;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 259131 261311 . - . ID=Physo138958;Parent=Physo138958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 259131 259399 . - 0 ID=Physo138958;Parent=Physo138958;rank=4 scaffold_68 . exon 259131 259399 . - . ID=Physo138958.4;Parent=Physo138958;constitutive=1;ensembl_phase=1;rank=4 scaffold_68 . CDS 259653 259782 . - 0 ID=Physo138958;Parent=Physo138958;rank=3 scaffold_68 . exon 259653 259782 . - . ID=Physo138958.3;Parent=Physo138958;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_68 . CDS 259931 261008 . - 0 ID=Physo138958;Parent=Physo138958;rank=2 scaffold_68 . exon 259931 261008 . - . ID=Physo138958.2;Parent=Physo138958;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 261046 261311 . - 0 ID=Physo138958;Parent=Physo138958;rank=1 scaffold_68 . exon 261046 261311 . - . ID=Physo138958.1;Parent=Physo138958;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 264240 266852 . - . ID=Physo138959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680052;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 264240 266852 . - . ID=Physo138959;Parent=Physo138959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 264240 264397 . - 0 ID=Physo138959;Parent=Physo138959;rank=6 scaffold_68 . exon 264240 264397 . - . ID=Physo138959.6;Parent=Physo138959;constitutive=1;ensembl_phase=1;rank=6 scaffold_68 . CDS 264418 264968 . - 0 ID=Physo138959;Parent=Physo138959;rank=5 scaffold_68 . CDS 265038 265106 . - 0 ID=Physo138959;Parent=Physo138959;rank=4 scaffold_68 . CDS 265176 265687 . - 0 ID=Physo138959;Parent=Physo138959;rank=3 scaffold_68 . CDS 265976 266107 . - 0 ID=Physo138959;Parent=Physo138959;rank=2 scaffold_68 . CDS 266187 266852 . - 0 ID=Physo138959;Parent=Physo138959;rank=1 scaffold_68 . biological_region 267916 267921 0.999 + . logic_name=eponine scaffold_68 . biological_region 268174 268176 0.999 + . logic_name=eponine scaffold_68 . biological_region 269252 269258 0.999 - . logic_name=eponine scaffold_68 . biological_region 269308 269311 0.999 + . logic_name=eponine scaffold_68 . biological_region 269337 269342 0.999 + . logic_name=eponine scaffold_68 . biological_region 269350 269350 0.999 + . logic_name=eponine scaffold_68 . biological_region 270127 270134 0.999 + . logic_name=eponine scaffold_68 . repeat_region 271122 271171 . ? . description=trf scaffold_68 . repeat_region 271155 271213 . ? . description=trf scaffold_68 . repeat_region 271660 271739 . ? . description=trf scaffold_68 . biological_region 272463 272466 0.999 + . logic_name=eponine scaffold_68 . biological_region 272832 272836 0.999 + . logic_name=eponine scaffold_68 . biological_region 273312 273315 0.999 - . logic_name=eponine scaffold_68 . biological_region 273666 273666 0.999 - . logic_name=eponine scaffold_68 . biological_region 274054 274055 0.999 - . logic_name=eponine scaffold_68 . exon 264418 264968 . - . ID=Physo138959.5;Parent=Physo138959;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_68 . exon 265038 265106 . - . ID=Physo138959.4;Parent=Physo138959;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_68 . exon 265176 265687 . - . ID=Physo138959.3;Parent=Physo138959;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_68 . exon 265976 266107 . - . ID=Physo138959.2;Parent=Physo138959;constitutive=1;rank=2 scaffold_68 . exon 266187 266852 . - . ID=Physo138959.1;Parent=Physo138959;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 267136 268339 . + . ID=Physo138960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680053;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 267136 268339 . + . ID=Physo138960;Parent=Physo138960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 267136 267188 . + 0 ID=Physo138960;Parent=Physo138960;rank=1 scaffold_68 . exon 267136 267188 . + . ID=Physo138960.1;Parent=Physo138960;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . CDS 267386 267887 . + 0 ID=Physo138960;Parent=Physo138960;rank=2 scaffold_68 . exon 267386 267887 . + . ID=Physo138960.2;Parent=Physo138960;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 268013 268339 . + 0 ID=Physo138960;Parent=Physo138960;rank=3 scaffold_68 . exon 268013 268339 . + . ID=Physo138960.3;Parent=Physo138960;constitutive=1;rank=3 scaffold_68 ensembl protein_coding_gene 269136 270738 . - . ID=Physo138961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680054;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 269136 270738 . - . ID=Physo138961;Parent=Physo138961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 269136 269290 . - 0 ID=Physo138961;Parent=Physo138961;rank=7 scaffold_68 . exon 269136 269290 . - . ID=Physo138961.7;Parent=Physo138961;constitutive=1;ensembl_phase=1;rank=7 scaffold_68 . CDS 269341 269607 . - 0 ID=Physo138961;Parent=Physo138961;rank=6 scaffold_68 . exon 269341 269607 . - . ID=Physo138961.6;Parent=Physo138961;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_68 . CDS 269650 269743 . - 0 ID=Physo138961;Parent=Physo138961;rank=5 scaffold_68 . exon 269650 269743 . - . ID=Physo138961.5;Parent=Physo138961;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_68 . CDS 269791 269847 . - 0 ID=Physo138961;Parent=Physo138961;rank=4 scaffold_68 . exon 269791 269847 . - . ID=Physo138961.4;Parent=Physo138961;constitutive=1;rank=4 scaffold_68 . CDS 269975 270430 . - 0 ID=Physo138961;Parent=Physo138961;rank=3 scaffold_68 . exon 269975 270430 . - . ID=Physo138961.3;Parent=Physo138961;constitutive=1;rank=3 scaffold_68 . CDS 270489 270587 . - 0 ID=Physo138961;Parent=Physo138961;rank=2 scaffold_68 . exon 270489 270587 . - . ID=Physo138961.2;Parent=Physo138961;constitutive=1;rank=2 scaffold_68 . CDS 270661 270738 . - 0 ID=Physo138961;Parent=Physo138961;rank=1 scaffold_68 . exon 270661 270738 . - . ID=Physo138961.1;Parent=Physo138961;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 274352 274964 . + . ID=Physo119891;biotype=protein_coding;external_name=estExt_Genewise1.C_680047;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 274352 274964 . + . ID=Physo119891;Parent=Physo119891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . exon 274352 274964 . + . ID=Physo119891.1;Parent=Physo119891;constitutive=1;ensembl_phase=-1;rank=1 scaffold_68 . CDS 274368 274964 . + 0 ID=Physo119891;Parent=Physo119891;rank=1 scaffold_68 ensembl protein_coding_gene 275844 277952 . + . ID=Physo138963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680056;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 275844 277952 . + . ID=Physo138963;Parent=Physo138963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 275844 277952 . + 0 ID=Physo138963;Parent=Physo138963;rank=1 scaffold_68 . exon 275844 277952 . + . ID=Physo138963.1;Parent=Physo138963;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 278097 278749 . - . ID=Physo138964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680057;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 278097 278749 . - . ID=Physo138964;Parent=Physo138964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 278097 278597 . - 0 ID=Physo138964;Parent=Physo138964;rank=2 scaffold_68 . exon 278097 278597 . - . ID=Physo138964.2;Parent=Physo138964;constitutive=1;rank=2 scaffold_68 . CDS 278654 278749 . - 0 ID=Physo138964;Parent=Physo138964;rank=1 scaffold_68 . exon 278654 278749 . - . ID=Physo138964.1;Parent=Physo138964;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 279304 279738 . - . ID=Physo138965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680058;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 279304 279738 . - . ID=Physo138965;Parent=Physo138965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 279304 279738 . - 0 ID=Physo138965;Parent=Physo138965;rank=1 scaffold_68 . exon 279304 279738 . - . ID=Physo138965.1;Parent=Physo138965;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 280318 282063 . - . ID=Physo138966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680059;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 280318 282063 . - . ID=Physo138966;Parent=Physo138966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 280318 282063 . - 0 ID=Physo138966;Parent=Physo138966;rank=1 scaffold_68 . exon 280318 282063 . - . ID=Physo138966.1;Parent=Physo138966;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 282568 283212 . + . ID=Physo138967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680060;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 282568 283212 . + . ID=Physo138967;Parent=Physo138967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 282568 283212 . + 0 ID=Physo138967;Parent=Physo138967;rank=1 scaffold_68 . exon 282568 283212 . + . ID=Physo138967.1;Parent=Physo138967;constitutive=1;rank=1 scaffold_68 . biological_region 284135 284135 0.999 - . logic_name=eponine scaffold_68 . biological_region 285962 285962 0.999 - . logic_name=eponine scaffold_68 . biological_region 286038 286038 0.999 - . logic_name=eponine scaffold_68 . repeat_region 289118 289131 . ? . description=dust scaffold_68 . repeat_region 289248 289263 . ? . description=dust scaffold_68 . repeat_region 289744 289767 . ? . description=trf scaffold_68 . repeat_region 289921 289929 . ? . description=dust scaffold_68 ensembl protein_coding_gene 283972 286437 . + . ID=Physo119846;biotype=protein_coding;external_name=estExt_Genewise1.C_680002;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 283972 286437 . + . ID=Physo119846;Parent=Physo119846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . exon 283972 286437 . + . ID=Physo119846.1;Parent=Physo119846;constitutive=1;ensembl_phase=-1;rank=1 scaffold_68 . CDS 283987 286437 . + 0 ID=Physo119846;Parent=Physo119846;rank=1 scaffold_68 ensembl protein_coding_gene 287744 288989 . - . ID=Physo138969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680062;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 287744 288989 . - . ID=Physo138969;Parent=Physo138969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 287744 288906 . - 0 ID=Physo138969;Parent=Physo138969;rank=2 scaffold_68 . exon 287744 288906 . - . ID=Physo138969.2;Parent=Physo138969;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 288932 288989 . - 0 ID=Physo138969;Parent=Physo138969;rank=1 scaffold_68 . exon 288932 288989 . - . ID=Physo138969.1;Parent=Physo138969;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . repeat_region 308763 308771 . ? . description=dust scaffold_68 . repeat_region 308925 308948 . ? . description=trf scaffold_68 . repeat_region 309429 309444 . ? . description=dust scaffold_68 . repeat_region 309561 309574 . ? . description=dust scaffold_68 . biological_region 310752 310754 0.999 - . logic_name=eponine scaffold_68 . repeat_region 311023 311030 . ? . description=dust scaffold_68 ensembl protein_coding_gene 309698 310963 . + . ID=Physo138970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680063;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 309698 310963 . + . ID=Physo138970;Parent=Physo138970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . exon 309698 309760 . + . ID=Physo138970.1;Parent=Physo138970;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_68 . CDS 309703 309760 . + 0 ID=Physo138970;Parent=Physo138970;rank=1 scaffold_68 . CDS 309786 310963 . + 0 ID=Physo138970;Parent=Physo138970;rank=2 scaffold_68 . exon 309786 310963 . + . ID=Physo138970.2;Parent=Physo138970;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 ensembl protein_coding_gene 313370 315500 . - . ID=Physo138971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680064;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 313370 315500 . - . ID=Physo138971;Parent=Physo138971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 313370 314997 . - 0 ID=Physo138971;Parent=Physo138971;rank=4 scaffold_68 . exon 313370 314997 . - . ID=Physo138971.4;Parent=Physo138971;constitutive=1;ensembl_phase=1;rank=4 scaffold_68 . CDS 315084 315144 . - 0 ID=Physo138971;Parent=Physo138971;rank=3 scaffold_68 . exon 315084 315144 . - . ID=Physo138971.3;Parent=Physo138971;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_68 . CDS 315223 315312 . - 0 ID=Physo138971;Parent=Physo138971;rank=2 scaffold_68 . exon 315223 315312 . - . ID=Physo138971.2;Parent=Physo138971;constitutive=1;rank=2 scaffold_68 . CDS 315441 315500 . - 0 ID=Physo138971;Parent=Physo138971;rank=1 scaffold_68 . exon 315441 315500 . - . ID=Physo138971.1;Parent=Physo138971;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 316085 318804 . + . ID=Physo138972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680065;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 316085 318804 . + . ID=Physo138972;Parent=Physo138972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 316085 316167 . + 0 ID=Physo138972;Parent=Physo138972;rank=1 scaffold_68 . exon 316085 316167 . + . ID=Physo138972.1;Parent=Physo138972;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . CDS 316266 316290 . + 0 ID=Physo138972;Parent=Physo138972;rank=2 scaffold_68 . exon 316266 316290 . + . ID=Physo138972.2;Parent=Physo138972;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 316366 316701 . + 0 ID=Physo138972;Parent=Physo138972;rank=3 scaffold_68 . exon 316366 316701 . + . ID=Physo138972.3;Parent=Physo138972;constitutive=1;rank=3 scaffold_68 . CDS 316839 317913 . + 0 ID=Physo138972;Parent=Physo138972;rank=4 scaffold_68 . exon 316839 317913 . + . ID=Physo138972.4;Parent=Physo138972;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_68 . CDS 318020 318804 . + 0 ID=Physo138972;Parent=Physo138972;rank=5 scaffold_68 . exon 318020 318804 . + . ID=Physo138972.5;Parent=Physo138972;constitutive=1;ensembl_phase=1;rank=5 scaffold_68 ensembl protein_coding_gene 319871 322590 . - . ID=Physo138973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680066;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 319871 322590 . - . ID=Physo138973;Parent=Physo138973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 319871 320655 . - 0 ID=Physo138973;Parent=Physo138973;rank=5 scaffold_68 . exon 319871 320655 . - . ID=Physo138973.5;Parent=Physo138973;constitutive=1;ensembl_phase=1;rank=5 scaffold_68 . CDS 320762 321836 . - 0 ID=Physo138973;Parent=Physo138973;rank=4 scaffold_68 . exon 320762 321836 . - . ID=Physo138973.4;Parent=Physo138973;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_68 . CDS 321974 322309 . - 0 ID=Physo138973;Parent=Physo138973;rank=3 scaffold_68 . exon 321974 322309 . - . ID=Physo138973.3;Parent=Physo138973;constitutive=1;rank=3 scaffold_68 . CDS 322385 322409 . - 0 ID=Physo138973;Parent=Physo138973;rank=2 scaffold_68 . exon 322385 322409 . - . ID=Physo138973.2;Parent=Physo138973;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 322508 322590 . - 0 ID=Physo138973;Parent=Physo138973;rank=1 scaffold_68 . exon 322508 322590 . - . ID=Physo138973.1;Parent=Physo138973;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . repeat_region 324247 324254 . ? . description=dust scaffold_68 . biological_region 327867 327868 0.999 - . logic_name=eponine scaffold_68 . biological_region 329003 329004 0.999 - . logic_name=eponine scaffold_68 . repeat_region 329207 329237 . ? . description=dust scaffold_68 . repeat_region 329207 329237 . ? . description=trf scaffold_68 . biological_region 329990 329993 0.999 - . logic_name=eponine scaffold_68 . biological_region 332224 332233 0.999 - . logic_name=eponine scaffold_68 . biological_region 332259 332260 0.999 - . logic_name=eponine scaffold_68 . repeat_region 332261 332269 . ? . description=dust scaffold_68 ensembl protein_coding_gene 328823 330956 . + . ID=Physo138974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680067;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 328823 330956 . + . ID=Physo138974;Parent=Physo138974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 328823 329765 . + 0 ID=Physo138974;Parent=Physo138974;rank=1 scaffold_68 . exon 328823 329765 . + . ID=Physo138974.1;Parent=Physo138974;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . CDS 329845 330956 . + 0 ID=Physo138974;Parent=Physo138974;rank=2 scaffold_68 . exon 329845 330956 . + . ID=Physo138974.2;Parent=Physo138974;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 . repeat_region 333042 333088 . - . description=Sola3-2_PS scaffold_68 . repeat_region 333344 333489 . - . description=GypsyPi-1c_LTR scaffold_68 . repeat_region 333611 333933 . - . description=GypsyPi-1c_I-int scaffold_68 . repeat_region 334502 341271 . - . description=GypsyPi-1c_I-int scaffold_68 . repeat_region 341309 341454 . - . description=GypsyPi-1c_LTR scaffold_68 . repeat_region 341611 342102 . - . description=Sola3-2_PS scaffold_68 ensembl protein_coding_gene 333797 336004 . + . ID=Physo138975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680068;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 333797 336004 . + . ID=Physo138975;Parent=Physo138975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 333797 335636 . + 0 ID=Physo138975;Parent=Physo138975;rank=1 scaffold_68 . exon 333797 335636 . + . ID=Physo138975.1;Parent=Physo138975;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . CDS 335718 336004 . + 0 ID=Physo138975;Parent=Physo138975;rank=2 scaffold_68 . exon 335718 336004 . + . ID=Physo138975.2;Parent=Physo138975;constitutive=1;ensembl_phase=1;rank=2 scaffold_68 ensembl protein_coding_gene 336274 339816 . - . ID=Physo138976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680069;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 336274 339816 . - . ID=Physo138976;Parent=Physo138976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 336274 336276 . - 0 ID=Physo138976;Parent=Physo138976;rank=7 scaffold_68 . exon 336274 336276 . - . ID=Physo138976.7;Parent=Physo138976;constitutive=1;rank=7 scaffold_68 . CDS 336342 337004 . - 0 ID=Physo138976;Parent=Physo138976;rank=6 scaffold_68 . exon 336342 337004 . - . ID=Physo138976.6;Parent=Physo138976;constitutive=1;rank=6 scaffold_68 . CDS 337114 337300 . - 0 ID=Physo138976;Parent=Physo138976;rank=5 scaffold_68 . exon 337114 337300 . - . ID=Physo138976.5;Parent=Physo138976;constitutive=1;ensembl_phase=2;rank=5 scaffold_68 . CDS 337577 338187 . - 0 ID=Physo138976;Parent=Physo138976;rank=4 scaffold_68 . exon 337577 338187 . - . ID=Physo138976.4;Parent=Physo138976;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_68 . CDS 338311 338680 . - 0 ID=Physo138976;Parent=Physo138976;rank=3 scaffold_68 . exon 338311 338680 . - . ID=Physo138976.3;Parent=Physo138976;constitutive=1;ensembl_phase=2;rank=3 scaffold_68 . CDS 338701 339449 . - 0 ID=Physo138976;Parent=Physo138976;rank=2 scaffold_68 . exon 338701 339449 . - . ID=Physo138976.2;Parent=Physo138976;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_68 . CDS 339502 339816 . - 0 ID=Physo138976;Parent=Physo138976;rank=1 scaffold_68 . exon 339502 339816 . - . ID=Physo138976.1;Parent=Physo138976;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 340146 341030 . - . ID=Physo138977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680070;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 340146 341030 . - . ID=Physo138977;Parent=Physo138977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 340146 341030 . - 0 ID=Physo138977;Parent=Physo138977;rank=1 scaffold_68 . exon 340146 341030 . - . ID=Physo138977.1;Parent=Physo138977;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 341676 342334 . - . ID=Physo138978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680071;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 341676 342334 . - . ID=Physo138978;Parent=Physo138978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 341676 342204 . - 0 ID=Physo138978;Parent=Physo138978;rank=2 scaffold_68 . exon 341676 342204 . - . ID=Physo138978.2;Parent=Physo138978;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 342264 342334 . - 0 ID=Physo138978;Parent=Physo138978;rank=1 scaffold_68 . exon 342264 342334 . - . ID=Physo138978.1;Parent=Physo138978;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . repeat_region 346565 346572 . ? . description=dust scaffold_68 . repeat_region 347200 347223 . ? . description=dust scaffold_68 . biological_region 348998 349002 0.999 + . logic_name=eponine scaffold_68 . biological_region 349101 349105 0.999 - . logic_name=eponine scaffold_68 . biological_region 349754 349758 0.999 + . logic_name=eponine scaffold_68 . biological_region 350242 350243 0.999 - . logic_name=eponine scaffold_68 . biological_region 351183 351186 0.999 - . logic_name=eponine scaffold_68 . biological_region 351279 351288 0.999 - . logic_name=eponine scaffold_68 . biological_region 351331 351333 0.999 - . logic_name=eponine scaffold_68 . biological_region 351350 351352 0.999 - . logic_name=eponine scaffold_68 . biological_region 351387 351387 0.999 + . logic_name=eponine scaffold_68 . biological_region 351405 351407 0.999 - . logic_name=eponine scaffold_68 . biological_region 351453 351456 0.999 - . logic_name=eponine scaffold_68 . repeat_region 352017 352024 . ? . description=dust scaffold_68 ensembl protein_coding_gene 346657 347553 . - . ID=Physo138979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680072;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 346657 347553 . - . ID=Physo138979;Parent=Physo138979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 346657 347073 . - 0 ID=Physo138979;Parent=Physo138979;rank=3 scaffold_68 . exon 346657 347073 . - . ID=Physo138979.3;Parent=Physo138979;constitutive=1;rank=3 scaffold_68 . CDS 347242 347389 . - 0 ID=Physo138979;Parent=Physo138979;rank=2 scaffold_68 . exon 347242 347389 . - . ID=Physo138979.2;Parent=Physo138979;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 347444 347553 . - 0 ID=Physo138979;Parent=Physo138979;rank=1 scaffold_68 . exon 347444 347553 . - . ID=Physo138979.1;Parent=Physo138979;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 348945 350426 . + . ID=Physo138980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680073;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 348945 350426 . + . ID=Physo138980;Parent=Physo138980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 348945 350426 . + 0 ID=Physo138980;Parent=Physo138980;rank=1 scaffold_68 . exon 348945 350426 . + . ID=Physo138980.1;Parent=Physo138980;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 350806 352418 . - . ID=Physo157903;biotype=protein_coding;external_name=C_scaffold_68000005;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 350806 352418 . - . ID=Physo157903;Parent=Physo157903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 350806 350889 . - 0 ID=Physo157903;Parent=Physo157903;rank=6 scaffold_68 . exon 350806 350889 . - . ID=Physo157903.6;Parent=Physo157903;constitutive=1;rank=6 scaffold_68 . CDS 351040 351468 . - 0 ID=Physo157903;Parent=Physo157903;rank=5 scaffold_68 . exon 351040 351468 . - . ID=Physo157903.5;Parent=Physo157903;constitutive=1;rank=5 scaffold_68 . CDS 351580 351781 . - 0 ID=Physo157903;Parent=Physo157903;rank=4 scaffold_68 . exon 351580 351781 . - . ID=Physo157903.4;Parent=Physo157903;constitutive=1;ensembl_phase=2;rank=4 scaffold_68 . CDS 351892 351953 . - 0 ID=Physo157903;Parent=Physo157903;rank=3 scaffold_68 . exon 351892 351953 . - . ID=Physo157903.3;Parent=Physo157903;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_68 . CDS 352039 352198 . - 0 ID=Physo157903;Parent=Physo157903;rank=2 scaffold_68 . exon 352039 352198 . - . ID=Physo157903.2;Parent=Physo157903;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 352291 352418 . - 0 ID=Physo157903;Parent=Physo157903;rank=1 scaffold_68 . exon 352291 352418 . - . ID=Physo157903.1;Parent=Physo157903;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 358236 359261 . + . ID=Physo109182;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_680003;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 358236 359261 . + . ID=Physo109182;Parent=Physo109182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 358236 359201 . + 0 ID=Physo109182;Parent=Physo109182;rank=1 scaffold_68 . exon 358236 359261 . + . ID=Physo109182.1;Parent=Physo109182;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_68 ensembl protein_coding_gene 352665 353570 . + . ID=Physo138982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680075;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 352665 353570 . + . ID=Physo138982;Parent=Physo138982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 352665 352799 . + 0 ID=Physo138982;Parent=Physo138982;rank=1 scaffold_68 . exon 352665 352799 . + . ID=Physo138982.1;Parent=Physo138982;constitutive=1;rank=1 scaffold_68 . CDS 352892 352941 . + 0 ID=Physo138982;Parent=Physo138982;rank=2 scaffold_68 . exon 352892 352941 . + . ID=Physo138982.2;Parent=Physo138982;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_68 . CDS 353142 353341 . + 0 ID=Physo138982;Parent=Physo138982;rank=3 scaffold_68 . exon 353142 353341 . + . ID=Physo138982.3;Parent=Physo138982;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_68 . CDS 353368 353537 . + 0 ID=Physo138982;Parent=Physo138982;rank=4 scaffold_68 . exon 353368 353570 . + . ID=Physo138982.4;Parent=Physo138982;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_68 ensembl protein_coding_gene 357037 358010 . + . ID=Physo138984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680077;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 357037 358010 . + . ID=Physo138984;Parent=Physo138984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 357037 357689 . + 0 ID=Physo138984;Parent=Physo138984;rank=1 scaffold_68 . exon 357037 357689 . + . ID=Physo138984.1;Parent=Physo138984;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . CDS 357740 358010 . + 0 ID=Physo138984;Parent=Physo138984;rank=2 scaffold_68 . exon 357740 358010 . + . ID=Physo138984.2;Parent=Physo138984;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 ensembl protein_coding_gene 353852 354845 . - . ID=Physo157905;biotype=protein_coding;external_name=C_scaffold_68000007;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 353852 354845 . - . ID=Physo157905;Parent=Physo157905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 353852 354203 . - 0 ID=Physo157905;Parent=Physo157905;rank=3 scaffold_68 . exon 353852 354203 . - . ID=Physo157905.3;Parent=Physo157905;constitutive=1;ensembl_phase=2;rank=3 scaffold_68 . CDS 354280 354670 . - 0 ID=Physo157905;Parent=Physo157905;rank=2 scaffold_68 . exon 354280 354670 . - . ID=Physo157905.2;Parent=Physo157905;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_68 . CDS 354692 354845 . - 0 ID=Physo157905;Parent=Physo157905;rank=1 scaffold_68 . exon 354692 354845 . - . ID=Physo157905.1;Parent=Physo157905;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . biological_region 362454 362456 0.999 + . logic_name=eponine scaffold_68 . biological_region 366883 366884 0.999 + . logic_name=eponine scaffold_68 . biological_region 368737 368740 0.999 + . logic_name=eponine scaffold_68 ensembl protein_coding_gene 362420 366586 . - . ID=Physo119867;biotype=protein_coding;external_name=estExt_Genewise1.C_680023;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 362420 366586 . - . ID=Physo119867;Parent=Physo119867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 362420 362850 . - 0 ID=Physo119867;Parent=Physo119867;rank=5 scaffold_68 . exon 362420 362850 . - . ID=Physo119867.5;Parent=Physo119867;constitutive=1;ensembl_phase=1;rank=5 scaffold_68 . CDS 363147 364152 . - 0 ID=Physo119867;Parent=Physo119867;rank=4 scaffold_68 . exon 363147 364152 . - . ID=Physo119867.4;Parent=Physo119867;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_68 . CDS 364588 365573 . - 0 ID=Physo119867;Parent=Physo119867;rank=3 scaffold_68 . exon 364588 365573 . - . ID=Physo119867.3;Parent=Physo119867;constitutive=1;ensembl_phase=1;rank=3 scaffold_68 . CDS 365640 365750 . - 0 ID=Physo119867;Parent=Physo119867;rank=2 scaffold_68 . exon 365640 365750 . - . ID=Physo119867.2;Parent=Physo119867;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_68 . CDS 365829 365919 . - 0 ID=Physo119867;Parent=Physo119867;rank=1 scaffold_68 . exon 365829 366586 . - . ID=Physo119867.1;Parent=Physo119867;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_68 . repeat_region 381461 381799 . ? . description=trf scaffold_68 . repeat_region 381468 381799 . ? . description=trf scaffold_68 ensembl protein_coding_gene 376224 384104 . - . ID=Physo138986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680079;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 376224 384104 . - . ID=Physo138986;Parent=Physo138986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 376224 376537 . - 0 ID=Physo138986;Parent=Physo138986;rank=9 scaffold_68 . exon 376224 376537 . - . ID=Physo138986.9;Parent=Physo138986;constitutive=1;ensembl_phase=1;rank=9 scaffold_68 . CDS 376630 378786 . - 0 ID=Physo138986;Parent=Physo138986;rank=8 scaffold_68 . exon 376630 378786 . - . ID=Physo138986.8;Parent=Physo138986;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_68 . CDS 378826 379079 . - 0 ID=Physo138986;Parent=Physo138986;rank=7 scaffold_68 . exon 378826 379079 . - . ID=Physo138986.7;Parent=Physo138986;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_68 . CDS 379242 379845 . - 0 ID=Physo138986;Parent=Physo138986;rank=6 scaffold_68 . exon 379242 379845 . - . ID=Physo138986.6;Parent=Physo138986;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_68 . CDS 380573 381618 . - 0 ID=Physo138986;Parent=Physo138986;rank=5 scaffold_68 . exon 380573 381618 . - . ID=Physo138986.5;Parent=Physo138986;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_68 . CDS 381690 382722 . - 0 ID=Physo138986;Parent=Physo138986;rank=4 scaffold_68 . exon 381690 382722 . - . ID=Physo138986.4;Parent=Physo138986;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_68 . CDS 382951 383526 . - 0 ID=Physo138986;Parent=Physo138986;rank=3 scaffold_68 . CDS 383616 384027 . - 0 ID=Physo138986;Parent=Physo138986;rank=2 scaffold_68 . CDS 384078 384104 . - 0 ID=Physo138986;Parent=Physo138986;rank=1 scaffold_68 . repeat_region 385759 387026 . + . description=GypsyPi-1c_I-int scaffold_68 . biological_region 386780 386783 0.999 + . logic_name=eponine scaffold_68 . repeat_region 388392 388929 . + . description=GypsyPi-1c_I-int scaffold_68 . biological_region 388628 388629 0.999 + . logic_name=eponine scaffold_68 . biological_region 389722 389724 0.999 + . logic_name=eponine scaffold_68 . repeat_region 389772 392728 . + . description=GypsyPi-1c_I-int scaffold_68 . exon 382951 383526 . - . ID=Physo138986.3;Parent=Physo138986;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_68 . exon 383616 384027 . - . ID=Physo138986.2;Parent=Physo138986;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_68 . exon 384078 384104 . - . ID=Physo138986.1;Parent=Physo138986;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 387457 393658 . + . ID=Physo138987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680080;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 387457 393658 . + . ID=Physo138987;Parent=Physo138987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 387457 387803 . + 0 ID=Physo138987;Parent=Physo138987;rank=1 scaffold_68 . exon 387457 387803 . + . ID=Physo138987.1;Parent=Physo138987;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 . CDS 387852 388380 . + 0 ID=Physo138987;Parent=Physo138987;rank=2 scaffold_68 . exon 387852 388380 . + . ID=Physo138987.2;Parent=Physo138987;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 388518 389654 . + 0 ID=Physo138987;Parent=Physo138987;rank=3 scaffold_68 . exon 388518 389654 . + . ID=Physo138987.3;Parent=Physo138987;constitutive=1;rank=3 scaffold_68 . CDS 389691 391950 . + 0 ID=Physo138987;Parent=Physo138987;rank=4 scaffold_68 . exon 389691 391950 . + . ID=Physo138987.4;Parent=Physo138987;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_68 . CDS 392029 392277 . + 0 ID=Physo138987;Parent=Physo138987;rank=5 scaffold_68 . CDS 392429 392441 . + 0 ID=Physo138987;Parent=Physo138987;rank=6 scaffold_68 . CDS 392575 393169 . + 0 ID=Physo138987;Parent=Physo138987;rank=7 scaffold_68 . CDS 393335 393658 . + 0 ID=Physo138987;Parent=Physo138987;rank=8 scaffold_68 . repeat_region 400294 400380 . ? . description=dust scaffold_68 . repeat_region 400870 400956 . ? . description=dust scaffold_68 ensembl tRNA_gene 400781 400853 . - . ID=EPrPSOG00000000015;biotype=tRNA;description=tRNA-Lys for anticodon CUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_68 ensembl transcript 400781 400853 . - . ID=EPrPSOT00000000015;Parent=EPrPSOG00000000015;biotype=tRNA;logic_name=ncrna_eg scaffold_68 ensembl tRNA_gene 400205 400277 . - . ID=EPrPSOG00000000218;biotype=tRNA;description=tRNA-Lys for anticodon CUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_68 ensembl transcript 400205 400277 . - . ID=EPrPSOT00000000218;Parent=EPrPSOG00000000218;biotype=tRNA;logic_name=ncrna_eg scaffold_68 . exon 400781 400853 . - . ID=EPrPSOE00000000015;Parent=EPrPSOT00000000015;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . exon 400205 400277 . - . ID=EPrPSOE00000000218;Parent=EPrPSOT00000000218;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_68 . exon 392029 392277 . + . ID=Physo138987.5;Parent=Physo138987;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_68 . exon 392429 392441 . + . ID=Physo138987.6;Parent=Physo138987;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_68 . exon 392575 393169 . + . ID=Physo138987.7;Parent=Physo138987;constitutive=1;ensembl_phase=2;rank=7 scaffold_68 . exon 393335 393658 . + . ID=Physo138987.8;Parent=Physo138987;constitutive=1;rank=8 scaffold_68 ensembl protein_coding_gene 393911 394466 . - . ID=Physo138988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680081;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 393911 394466 . - . ID=Physo138988;Parent=Physo138988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 393911 393917 . - 0 ID=Physo138988;Parent=Physo138988;rank=2 scaffold_68 . exon 393911 393917 . - . ID=Physo138988.2;Parent=Physo138988;constitutive=1;ensembl_phase=2;rank=2 scaffold_68 . CDS 393958 394466 . - 0 ID=Physo138988;Parent=Physo138988;rank=1 scaffold_68 . exon 393958 394466 . - . ID=Physo138988.1;Parent=Physo138988;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_68 ensembl protein_coding_gene 395032 397086 . + . ID=Physo138989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680082;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 395032 397086 . + . ID=Physo138989;Parent=Physo138989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 395032 397086 . + 0 ID=Physo138989;Parent=Physo138989;rank=1 scaffold_68 . exon 395032 397086 . + . ID=Physo138989.1;Parent=Physo138989;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 397235 397669 . - . ID=Physo138990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680083;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 397235 397669 . - . ID=Physo138990;Parent=Physo138990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . CDS 397235 397669 . - 0 ID=Physo138990;Parent=Physo138990;rank=1 scaffold_68 . exon 397235 397669 . - . ID=Physo138990.1;Parent=Physo138990;constitutive=1;rank=1 scaffold_68 ensembl protein_coding_gene 398103 399825 . - . ID=Physo138991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_680084;logic_name=jgi_physo1_1 scaffold_68 ensembl transcript 398103 399825 . - . ID=Physo138991;Parent=Physo138991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_68 . exon 398103 398207 . - . ID=Physo138991.4;Parent=Physo138991;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_68 . CDS 398158 398207 . - 0 ID=Physo138991;Parent=Physo138991;rank=4 scaffold_68 . CDS 398514 398827 . - 0 ID=Physo138991;Parent=Physo138991;rank=3 scaffold_68 . exon 398514 398827 . - . ID=Physo138991.3;Parent=Physo138991;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_68 . CDS 399045 399243 . - 0 ID=Physo138991;Parent=Physo138991;rank=2 scaffold_68 . exon 399045 399243 . - . ID=Physo138991.2;Parent=Physo138991;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_68 . CDS 399666 399825 . - 0 ID=Physo138991;Parent=Physo138991;rank=1 scaffold_68 . exon 399666 399825 . - . ID=Physo138991.1;Parent=Physo138991;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_73 1 401644 scaffold_73 . repeat_region 19 2024 . + . description=GypsyPi-1c_I-int scaffold_73 . repeat_region 2065 2105 . ? . description=trf scaffold_73 . repeat_region 2515 2649 . + . description=GypsyPi-1c_I-int scaffold_73 . repeat_region 3156 3547 . ? . description=trf scaffold_73 . biological_region 3787 3796 0.999 + . logic_name=eponine scaffold_73 . biological_region 3922 3930 0.999 + . logic_name=eponine scaffold_73 ensembl protein_coding_gene 66 1599 . + . ID=Physo139332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730001;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 66 1599 . + . ID=Physo139332;Parent=Physo139332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 66 1416 . + 0 ID=Physo139332;Parent=Physo139332;rank=1 scaffold_73 . exon 66 1416 . + . ID=Physo139332.1;Parent=Physo139332;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 1574 1599 . + 0 ID=Physo139332;Parent=Physo139332;rank=2 scaffold_73 . exon 1574 1599 . + . ID=Physo139332.2;Parent=Physo139332;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 ensembl protein_coding_gene 2728 5696 . - . ID=Physo139333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730002;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 2728 5696 . - . ID=Physo139333;Parent=Physo139333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 2728 3286 . - 0 ID=Physo139333;Parent=Physo139333;rank=5 scaffold_73 . exon 2728 3286 . - . ID=Physo139333.5;Parent=Physo139333;constitutive=1;ensembl_phase=2;rank=5 scaffold_73 . CDS 3340 4179 . - 0 ID=Physo139333;Parent=Physo139333;rank=4 scaffold_73 . exon 3340 4179 . - . ID=Physo139333.4;Parent=Physo139333;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_73 . CDS 4827 5180 . - 0 ID=Physo139333;Parent=Physo139333;rank=3 scaffold_73 . exon 4827 5180 . - . ID=Physo139333.3;Parent=Physo139333;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_73 . CDS 5348 5597 . - 0 ID=Physo139333;Parent=Physo139333;rank=2 scaffold_73 . exon 5348 5597 . - . ID=Physo139333.2;Parent=Physo139333;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_73 . CDS 5651 5696 . - 0 ID=Physo139333;Parent=Physo139333;rank=1 scaffold_73 . exon 5651 5696 . - . ID=Physo139333.1;Parent=Physo139333;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 ensembl protein_coding_gene 6753 8464 . + . ID=Physo139334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730003;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 6753 8464 . + . ID=Physo139334;Parent=Physo139334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 6753 7541 . + 0 ID=Physo139334;Parent=Physo139334;rank=1 scaffold_73 . exon 6753 7541 . + . ID=Physo139334.1;Parent=Physo139334;constitutive=1;rank=1 scaffold_73 . CDS 7610 7951 . + 0 ID=Physo139334;Parent=Physo139334;rank=2 scaffold_73 . exon 7610 7951 . + . ID=Physo139334.2;Parent=Physo139334;constitutive=1;rank=2 scaffold_73 . CDS 8027 8464 . + 0 ID=Physo139334;Parent=Physo139334;rank=3 scaffold_73 . exon 8027 8464 . + . ID=Physo139334.3;Parent=Physo139334;constitutive=1;rank=3 scaffold_73 . repeat_region 17308 17319 . ? . description=dust scaffold_73 ensembl protein_coding_gene 17577 20581 . - . ID=Physo139337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730006;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 17577 20581 . - . ID=Physo139337;Parent=Physo139337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 17577 17999 . - 0 ID=Physo139337;Parent=Physo139337;rank=8 scaffold_73 . exon 17577 17999 . - . ID=Physo139337.8;Parent=Physo139337;constitutive=1;rank=8 scaffold_73 . CDS 18069 18148 . - 0 ID=Physo139337;Parent=Physo139337;rank=7 scaffold_73 . exon 18069 18148 . - . ID=Physo139337.7;Parent=Physo139337;constitutive=1;ensembl_phase=1;rank=7 scaffold_73 . CDS 18228 18411 . - 0 ID=Physo139337;Parent=Physo139337;rank=6 scaffold_73 . exon 18228 18411 . - . ID=Physo139337.6;Parent=Physo139337;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_73 . CDS 18489 18976 . - 0 ID=Physo139337;Parent=Physo139337;rank=5 scaffold_73 . exon 18489 18976 . - . ID=Physo139337.5;Parent=Physo139337;constitutive=1;ensembl_phase=1;rank=5 scaffold_73 . CDS 19139 19279 . - 0 ID=Physo139337;Parent=Physo139337;rank=4 scaffold_73 . exon 19139 19279 . - . ID=Physo139337.4;Parent=Physo139337;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_73 . CDS 19315 19513 . - 0 ID=Physo139337;Parent=Physo139337;rank=3 scaffold_73 . exon 19315 19513 . - . ID=Physo139337.3;Parent=Physo139337;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_73 . CDS 19594 19938 . - 0 ID=Physo139337;Parent=Physo139337;rank=2 scaffold_73 . exon 19594 19938 . - . ID=Physo139337.2;Parent=Physo139337;constitutive=1;rank=2 scaffold_73 . CDS 20009 20581 . - 0 ID=Physo139337;Parent=Physo139337;rank=1 scaffold_73 ensembl protein_coding_gene 10122 11535 . - . ID=Physo157971;biotype=protein_coding;external_name=C_scaffold_73000001;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 10122 11535 . - . ID=Physo157971;Parent=Physo157971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 10122 10301 . - 0 ID=Physo157971;Parent=Physo157971;rank=6 scaffold_73 . exon 10122 10301 . - . ID=Physo157971.6;Parent=Physo157971;constitutive=1;rank=6 scaffold_73 . CDS 10378 10527 . - 0 ID=Physo157971;Parent=Physo157971;rank=5 scaffold_73 . exon 10378 10527 . - . ID=Physo157971.5;Parent=Physo157971;constitutive=1;rank=5 scaffold_73 . CDS 10609 10953 . - 0 ID=Physo157971;Parent=Physo157971;rank=4 scaffold_73 . exon 10609 10953 . - . ID=Physo157971.4;Parent=Physo157971;constitutive=1;rank=4 scaffold_73 . CDS 11040 11174 . - 0 ID=Physo157971;Parent=Physo157971;rank=3 scaffold_73 . exon 11040 11174 . - . ID=Physo157971.3;Parent=Physo157971;constitutive=1;rank=3 scaffold_73 . CDS 11210 11382 . - 0 ID=Physo157971;Parent=Physo157971;rank=2 scaffold_73 . exon 11210 11382 . - . ID=Physo157971.2;Parent=Physo157971;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 11457 11535 . - 0 ID=Physo157971;Parent=Physo157971;rank=1 scaffold_73 . exon 11457 11535 . - . ID=Physo157971.1;Parent=Physo157971;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 ensembl protein_coding_gene 12636 17286 . - . ID=Physo157972;biotype=protein_coding;external_name=C_scaffold_73000002;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 12636 17286 . - . ID=Physo157972;Parent=Physo157972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 12636 12639 . - 0 ID=Physo157972;Parent=Physo157972;rank=12 scaffold_73 . exon 12636 12639 . - . ID=Physo157972.12;Parent=Physo157972;constitutive=1;ensembl_phase=2;rank=12 scaffold_73 . CDS 12714 12898 . - 0 ID=Physo157972;Parent=Physo157972;rank=11 scaffold_73 . exon 12714 12898 . - . ID=Physo157972.11;Parent=Physo157972;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_73 . CDS 12985 13329 . - 0 ID=Physo157972;Parent=Physo157972;rank=10 scaffold_73 . exon 12985 13329 . - . ID=Physo157972.10;Parent=Physo157972;constitutive=1;rank=10 scaffold_73 . CDS 13401 13724 . - 0 ID=Physo157972;Parent=Physo157972;rank=9 scaffold_73 . exon 13401 13724 . - . ID=Physo157972.9;Parent=Physo157972;constitutive=1;rank=9 scaffold_73 . CDS 13745 13999 . - 0 ID=Physo157972;Parent=Physo157972;rank=8 scaffold_73 . exon 13745 13999 . - . ID=Physo157972.8;Parent=Physo157972;constitutive=1;rank=8 scaffold_73 . CDS 14099 14509 . - 0 ID=Physo157972;Parent=Physo157972;rank=7 scaffold_73 . exon 14099 14509 . - . ID=Physo157972.7;Parent=Physo157972;constitutive=1;rank=7 scaffold_73 . CDS 14588 14935 . - 0 ID=Physo157972;Parent=Physo157972;rank=6 scaffold_73 . exon 14588 14935 . - . ID=Physo157972.6;Parent=Physo157972;constitutive=1;rank=6 scaffold_73 . CDS 15016 15132 . - 0 ID=Physo157972;Parent=Physo157972;rank=5 scaffold_73 . exon 15016 15132 . - . ID=Physo157972.5;Parent=Physo157972;constitutive=1;rank=5 scaffold_73 . CDS 15259 15581 . - 0 ID=Physo157972;Parent=Physo157972;rank=4 scaffold_73 . exon 15259 15581 . - . ID=Physo157972.4;Parent=Physo157972;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 . CDS 16015 16132 . - 0 ID=Physo157972;Parent=Physo157972;rank=3 scaffold_73 . exon 16015 16132 . - . ID=Physo157972.3;Parent=Physo157972;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_73 . CDS 16387 16610 . - 0 ID=Physo157972;Parent=Physo157972;rank=2 scaffold_73 . exon 16387 16610 . - . ID=Physo157972.2;Parent=Physo157972;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 16887 17286 . - 0 ID=Physo157972;Parent=Physo157972;rank=1 scaffold_73 . exon 16887 17286 . - . ID=Physo157972.1;Parent=Physo157972;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . biological_region 20768 20770 0.999 + . logic_name=eponine scaffold_73 . biological_region 22001 22006 0.999 - . logic_name=eponine scaffold_73 . biological_region 22133 22136 0.999 + . logic_name=eponine scaffold_73 . biological_region 22745 22749 0.999 - . logic_name=eponine scaffold_73 . repeat_region 25723 25789 . ? . description=trf scaffold_73 . biological_region 26480 26483 0.999 + . logic_name=eponine scaffold_73 . repeat_region 27851 27887 . ? . description=trf scaffold_73 . exon 20009 20581 . - . ID=Physo139337.1;Parent=Physo139337;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 20764 23985 . - . ID=Physo139338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730007;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 20764 23985 . - . ID=Physo139338;Parent=Physo139338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 20764 21210 . - . ID=Physo139338.5;Parent=Physo139338;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_73 . CDS 20779 21210 . - 0 ID=Physo139338;Parent=Physo139338;rank=5 scaffold_73 . CDS 21290 22262 . - 0 ID=Physo139338;Parent=Physo139338;rank=4 scaffold_73 . exon 21290 22262 . - . ID=Physo139338.4;Parent=Physo139338;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . CDS 22546 22847 . - 0 ID=Physo139338;Parent=Physo139338;rank=3 scaffold_73 . exon 22546 22847 . - . ID=Physo139338.3;Parent=Physo139338;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . CDS 22919 23245 . - 0 ID=Physo139338;Parent=Physo139338;rank=2 scaffold_73 . exon 22919 23245 . - . ID=Physo139338.2;Parent=Physo139338;constitutive=1;rank=2 scaffold_73 . CDS 23329 23985 . - 0 ID=Physo139338;Parent=Physo139338;rank=1 scaffold_73 . exon 23329 23985 . - . ID=Physo139338.1;Parent=Physo139338;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 26357 27795 . + . ID=Physo139339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730008;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 26357 27795 . + . ID=Physo139339;Parent=Physo139339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 26357 26381 . + 0 ID=Physo139339;Parent=Physo139339;rank=1 scaffold_73 . exon 26357 26381 . + . ID=Physo139339.1;Parent=Physo139339;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 26473 26870 . + 0 ID=Physo139339;Parent=Physo139339;rank=2 scaffold_73 . exon 26473 26870 . + . ID=Physo139339.2;Parent=Physo139339;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 26935 27795 . + 0 ID=Physo139339;Parent=Physo139339;rank=3 scaffold_73 . exon 26935 27795 . + . ID=Physo139339.3;Parent=Physo139339;constitutive=1;rank=3 scaffold_73 ensembl protein_coding_gene 28076 31341 . + . ID=Physo139340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730009;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 28076 31341 . + . ID=Physo139340;Parent=Physo139340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 28076 28690 . + 0 ID=Physo139340;Parent=Physo139340;rank=1 scaffold_73 . exon 28076 28690 . + . ID=Physo139340.1;Parent=Physo139340;constitutive=1;rank=1 scaffold_73 . CDS 28764 29108 . + 0 ID=Physo139340;Parent=Physo139340;rank=2 scaffold_73 . exon 28764 29108 . + . ID=Physo139340.2;Parent=Physo139340;constitutive=1;rank=2 scaffold_73 . CDS 29195 29369 . + 0 ID=Physo139340;Parent=Physo139340;rank=3 scaffold_73 . exon 29195 29369 . + . ID=Physo139340.3;Parent=Physo139340;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_73 . CDS 29471 29586 . + 0 ID=Physo139340;Parent=Physo139340;rank=4 scaffold_73 . CDS 29808 30503 . + 0 ID=Physo139340;Parent=Physo139340;rank=5 scaffold_73 . CDS 30574 31341 . + 0 ID=Physo139340;Parent=Physo139340;rank=6 scaffold_73 ensembl protein_coding_gene 24441 25348 . - . ID=Physo157973;biotype=protein_coding;external_name=C_scaffold_73000003;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 24441 25348 . - . ID=Physo157973;Parent=Physo157973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 24441 24686 . - 0 ID=Physo157973;Parent=Physo157973;rank=3 scaffold_73 . exon 24441 24686 . - . ID=Physo157973.3;Parent=Physo157973;constitutive=1;rank=3 scaffold_73 . CDS 24773 24935 . - 0 ID=Physo157973;Parent=Physo157973;rank=2 scaffold_73 . exon 24773 24935 . - . ID=Physo157973.2;Parent=Physo157973;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 25341 25348 . - 0 ID=Physo157973;Parent=Physo157973;rank=1 scaffold_73 . exon 25341 25348 . - . ID=Physo157973.1;Parent=Physo157973;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . exon 29471 29586 . + . ID=Physo139340.4;Parent=Physo139340;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 . exon 29808 30503 . + . ID=Physo139340.5;Parent=Physo139340;constitutive=1;rank=5 scaffold_73 . exon 30574 31341 . + . ID=Physo139340.6;Parent=Physo139340;constitutive=1;rank=6 scaffold_73 ensembl protein_coding_gene 31717 33940 . + . ID=Physo139341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730010;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 31717 33940 . + . ID=Physo139341;Parent=Physo139341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 31717 31965 . + 0 ID=Physo139341;Parent=Physo139341;rank=1 scaffold_73 . exon 31717 31965 . + . ID=Physo139341.1;Parent=Physo139341;constitutive=1;rank=1 scaffold_73 . CDS 32033 32374 . + 0 ID=Physo139341;Parent=Physo139341;rank=2 scaffold_73 . exon 32033 32374 . + . ID=Physo139341.2;Parent=Physo139341;constitutive=1;rank=2 scaffold_73 . CDS 32441 32742 . + 0 ID=Physo139341;Parent=Physo139341;rank=3 scaffold_73 . exon 32441 32742 . + . ID=Physo139341.3;Parent=Physo139341;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . CDS 33046 33940 . + 0 ID=Physo139341;Parent=Physo139341;rank=4 scaffold_73 . exon 33046 33940 . + . ID=Physo139341.4;Parent=Physo139341;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 ensembl protein_coding_gene 37619 39002 . - . ID=Physo139342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730011;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 37619 39002 . - . ID=Physo139342;Parent=Physo139342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 37619 37726 . - 0 ID=Physo139342;Parent=Physo139342;rank=4 scaffold_73 . exon 37619 37726 . - . ID=Physo139342.4;Parent=Physo139342;constitutive=1;rank=4 scaffold_73 . CDS 37858 38122 . - 0 ID=Physo139342;Parent=Physo139342;rank=3 scaffold_73 . exon 37858 38122 . - . ID=Physo139342.3;Parent=Physo139342;constitutive=1;ensembl_phase=2;rank=3 scaffold_73 . CDS 38146 38667 . - 0 ID=Physo139342;Parent=Physo139342;rank=2 scaffold_73 . exon 38146 38667 . - . ID=Physo139342.2;Parent=Physo139342;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_73 . CDS 38812 39002 . - 0 ID=Physo139342;Parent=Physo139342;rank=1 scaffold_73 . exon 38812 39002 . - . ID=Physo139342.1;Parent=Physo139342;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . repeat_region 39620 39662 . ? . description=trf scaffold_73 . biological_region 43720 43725 0.999 + . logic_name=eponine scaffold_73 . repeat_region 44941 44948 . ? . description=dust scaffold_73 . repeat_region 45519 45527 . ? . description=dust scaffold_73 ensembl protein_coding_gene 42078 42714 . + . ID=Physo139343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730012;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 42078 42714 . + . ID=Physo139343;Parent=Physo139343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 42078 42473 . + 0 ID=Physo139343;Parent=Physo139343;rank=1 scaffold_73 . exon 42078 42473 . + . ID=Physo139343.1;Parent=Physo139343;constitutive=1;rank=1 scaffold_73 . CDS 42703 42714 . + 0 ID=Physo139343;Parent=Physo139343;rank=2 scaffold_73 . exon 42703 42714 . + . ID=Physo139343.2;Parent=Physo139343;constitutive=1;rank=2 scaffold_73 ensembl protein_coding_gene 48298 49958 . - . ID=Physo139345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730014;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 48298 49958 . - . ID=Physo139345;Parent=Physo139345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 48298 48720 . - 0 ID=Physo139345;Parent=Physo139345;rank=4 scaffold_73 . exon 48298 48720 . - . ID=Physo139345.4;Parent=Physo139345;constitutive=1;rank=4 scaffold_73 . CDS 48807 49148 . - 0 ID=Physo139345;Parent=Physo139345;rank=3 scaffold_73 . exon 48807 49148 . - . ID=Physo139345.3;Parent=Physo139345;constitutive=1;rank=3 scaffold_73 . CDS 49527 49739 . - 0 ID=Physo139345;Parent=Physo139345;rank=2 scaffold_73 . CDS 49773 49958 . - 0 ID=Physo139345;Parent=Physo139345;rank=1 scaffold_73 ensembl protein_coding_gene 46162 48192 . - . ID=Physo157977;biotype=protein_coding;external_name=C_scaffold_73000007;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 46162 48192 . - . ID=Physo157977;Parent=Physo157977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 46162 46203 . - 0 ID=Physo157977;Parent=Physo157977;rank=6 scaffold_73 . exon 46162 46203 . - . ID=Physo157977.6;Parent=Physo157977;constitutive=1;rank=6 scaffold_73 . CDS 46550 46897 . - 0 ID=Physo157977;Parent=Physo157977;rank=5 scaffold_73 . exon 46550 46897 . - . ID=Physo157977.5;Parent=Physo157977;constitutive=1;rank=5 scaffold_73 . CDS 47018 47231 . - 0 ID=Physo157977;Parent=Physo157977;rank=4 scaffold_73 . exon 47018 47231 . - . ID=Physo157977.4;Parent=Physo157977;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . CDS 47253 47359 . - 0 ID=Physo157977;Parent=Physo157977;rank=3 scaffold_73 . exon 47253 47359 . - . ID=Physo157977.3;Parent=Physo157977;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . CDS 47430 47684 . - 0 ID=Physo157977;Parent=Physo157977;rank=2 scaffold_73 . exon 47430 47684 . - . ID=Physo157977.2;Parent=Physo157977;constitutive=1;rank=2 scaffold_73 . CDS 48022 48192 . - 0 ID=Physo157977;Parent=Physo157977;rank=1 scaffold_73 . exon 48022 48192 . - . ID=Physo157977.1;Parent=Physo157977;constitutive=1;rank=1 scaffold_73 . exon 49527 49739 . - . ID=Physo139345.2;Parent=Physo139345;constitutive=1;rank=2 scaffold_73 . exon 49773 49958 . - . ID=Physo139345.1;Parent=Physo139345;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 50124 52092 . + . ID=Physo139346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730015;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 50124 52092 . + . ID=Physo139346;Parent=Physo139346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 50124 50136 . + 0 ID=Physo139346;Parent=Physo139346;rank=1 scaffold_73 . exon 50124 50136 . + . ID=Physo139346.1;Parent=Physo139346;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 50226 50461 . + 0 ID=Physo139346;Parent=Physo139346;rank=2 scaffold_73 . exon 50226 50461 . + . ID=Physo139346.2;Parent=Physo139346;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 50540 50745 . + 0 ID=Physo139346;Parent=Physo139346;rank=3 scaffold_73 . exon 50540 50745 . + . ID=Physo139346.3;Parent=Physo139346;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . CDS 50813 50960 . + 0 ID=Physo139346;Parent=Physo139346;rank=4 scaffold_73 . exon 50813 50960 . + . ID=Physo139346.4;Parent=Physo139346;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . CDS 51041 51112 . + 0 ID=Physo139346;Parent=Physo139346;rank=5 scaffold_73 . exon 51041 51112 . + . ID=Physo139346.5;Parent=Physo139346;constitutive=1;rank=5 scaffold_73 . CDS 51187 51299 . + 0 ID=Physo139346;Parent=Physo139346;rank=6 scaffold_73 . exon 51187 51299 . + . ID=Physo139346.6;Parent=Physo139346;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_73 . CDS 51379 51622 . + 0 ID=Physo139346;Parent=Physo139346;rank=7 scaffold_73 . exon 51379 51622 . + . ID=Physo139346.7;Parent=Physo139346;constitutive=1;ensembl_phase=2;rank=7 scaffold_73 . CDS 51692 51765 . + 0 ID=Physo139346;Parent=Physo139346;rank=8 scaffold_73 . exon 51692 51765 . + . ID=Physo139346.8;Parent=Physo139346;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_73 . CDS 51851 51914 . + 0 ID=Physo139346;Parent=Physo139346;rank=9 scaffold_73 . exon 51851 52092 . + . ID=Physo139346.9;Parent=Physo139346;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=9 scaffold_73 ensembl protein_coding_gene 52493 53782 . - . ID=Physo139347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730016;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 52493 53782 . - . ID=Physo139347;Parent=Physo139347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 52493 53782 . - 0 ID=Physo139347;Parent=Physo139347;rank=1 scaffold_73 . exon 52493 53782 . - . ID=Physo139347.1;Parent=Physo139347;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 54516 56671 . + . ID=Physo139348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730017;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 54516 56671 . + . ID=Physo139348;Parent=Physo139348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 54516 55177 . + 0 ID=Physo139348;Parent=Physo139348;rank=1 scaffold_73 . exon 54516 55177 . + . ID=Physo139348.1;Parent=Physo139348;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 55266 55752 . + 0 ID=Physo139348;Parent=Physo139348;rank=2 scaffold_73 . exon 55266 55752 . + . ID=Physo139348.2;Parent=Physo139348;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 55835 56145 . + 0 ID=Physo139348;Parent=Physo139348;rank=3 scaffold_73 . exon 55835 56145 . + . ID=Physo139348.3;Parent=Physo139348;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . CDS 56257 56671 . + 0 ID=Physo139348;Parent=Physo139348;rank=4 scaffold_73 . exon 56257 56671 . + . ID=Physo139348.4;Parent=Physo139348;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 ensembl protein_coding_gene 58733 60164 . + . ID=Physo139349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730018;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 58733 60164 . + . ID=Physo139349;Parent=Physo139349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 58733 60164 . + . ID=Physo139349.1;Parent=Physo139349;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_73 . CDS 59069 59821 . + 0 ID=Physo139349;Parent=Physo139349;rank=1 scaffold_73 . repeat_region 58755 58815 . ? . description=dust scaffold_73 . biological_region 58813 58820 0.999 - . logic_name=eponine scaffold_73 . biological_region 58907 58908 0.999 - . logic_name=eponine scaffold_73 . biological_region 58936 58940 0.999 - . logic_name=eponine scaffold_73 . biological_region 60711 60715 0.999 - . logic_name=eponine scaffold_73 . biological_region 60721 60722 0.999 + . logic_name=eponine scaffold_73 . biological_region 60765 60771 0.999 + . logic_name=eponine scaffold_73 . biological_region 60770 60775 0.999 - . logic_name=eponine scaffold_73 . biological_region 60803 60807 0.999 - . logic_name=eponine scaffold_73 . biological_region 61202 61205 0.999 + . logic_name=eponine scaffold_73 . biological_region 63892 63894 0.999 - . logic_name=eponine scaffold_73 . repeat_region 67819 67826 . ? . description=dust scaffold_73 ensembl protein_coding_gene 60873 62075 . + . ID=Physo139350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730019;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 60873 62075 . + . ID=Physo139350;Parent=Physo139350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 60873 60923 . + 0 ID=Physo139350;Parent=Physo139350;rank=1 scaffold_73 . exon 60873 60923 . + . ID=Physo139350.1;Parent=Physo139350;constitutive=1;rank=1 scaffold_73 . CDS 61011 61055 . + 0 ID=Physo139350;Parent=Physo139350;rank=2 scaffold_73 . exon 61011 61055 . + . ID=Physo139350.2;Parent=Physo139350;constitutive=1;rank=2 scaffold_73 . CDS 61126 61360 . + 0 ID=Physo139350;Parent=Physo139350;rank=3 scaffold_73 . exon 61126 61360 . + . ID=Physo139350.3;Parent=Physo139350;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_73 . CDS 61437 61777 . + 0 ID=Physo139350;Parent=Physo139350;rank=4 scaffold_73 . exon 61437 61777 . + . ID=Physo139350.4;Parent=Physo139350;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 . CDS 61862 61918 . + 0 ID=Physo139350;Parent=Physo139350;rank=5 scaffold_73 . exon 61862 61918 . + . ID=Physo139350.5;Parent=Physo139350;constitutive=1;rank=5 scaffold_73 . CDS 61986 62075 . + 0 ID=Physo139350;Parent=Physo139350;rank=6 scaffold_73 . exon 61986 62075 . + . ID=Physo139350.6;Parent=Physo139350;constitutive=1;rank=6 scaffold_73 ensembl protein_coding_gene 63435 66945 . - . ID=Physo139352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730021;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 63435 66945 . - . ID=Physo139352;Parent=Physo139352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 63435 63619 . - 0 ID=Physo139352;Parent=Physo139352;rank=2 scaffold_73 . exon 63435 63619 . - . ID=Physo139352.2;Parent=Physo139352;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 63698 66902 . - 0 ID=Physo139352;Parent=Physo139352;rank=1 scaffold_73 . exon 63698 66945 . - . ID=Physo139352.1;Parent=Physo139352;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_73 ensembl protein_coding_gene 62330 62996 . + . ID=Physo157980;biotype=protein_coding;external_name=C_scaffold_73000010;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 62330 62996 . + . ID=Physo157980;Parent=Physo157980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 62330 62440 . + 0 ID=Physo157980;Parent=Physo157980;rank=1 scaffold_73 . exon 62330 62440 . + . ID=Physo157980.1;Parent=Physo157980;constitutive=1;rank=1 scaffold_73 . CDS 62520 62598 . + 0 ID=Physo157980;Parent=Physo157980;rank=2 scaffold_73 . exon 62520 62598 . + . ID=Physo157980.2;Parent=Physo157980;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_73 . CDS 62667 62843 . + 0 ID=Physo157980;Parent=Physo157980;rank=3 scaffold_73 . exon 62667 62843 . + . ID=Physo157980.3;Parent=Physo157980;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 62917 62996 . + 0 ID=Physo157980;Parent=Physo157980;rank=4 scaffold_73 . exon 62917 62996 . + . ID=Physo157980.4;Parent=Physo157980;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 . repeat_region 76279 76302 . ? . description=trf scaffold_73 ensembl protein_coding_gene 74863 75939 . + . ID=Physo139354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730023;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 74863 75939 . + . ID=Physo139354;Parent=Physo139354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 74863 75939 . + 0 ID=Physo139354;Parent=Physo139354;rank=1 scaffold_73 . exon 74863 75939 . + . ID=Physo139354.1;Parent=Physo139354;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 69760 71251 . + . ID=Physo157982;biotype=protein_coding;external_name=C_scaffold_73000012;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 69760 71251 . + . ID=Physo157982;Parent=Physo157982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 69760 69951 . + 0 ID=Physo157982;Parent=Physo157982;rank=1 scaffold_73 . exon 69760 69951 . + . ID=Physo157982.1;Parent=Physo157982;constitutive=1;rank=1 scaffold_73 . CDS 70037 70514 . + 0 ID=Physo157982;Parent=Physo157982;rank=2 scaffold_73 . exon 70037 70514 . + . ID=Physo157982.2;Parent=Physo157982;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_73 . CDS 70731 71180 . + 0 ID=Physo157982;Parent=Physo157982;rank=3 scaffold_73 . exon 70731 71180 . + . ID=Physo157982.3;Parent=Physo157982;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 71211 71251 . + 0 ID=Physo157982;Parent=Physo157982;rank=4 scaffold_73 . exon 71211 71251 . + . ID=Physo157982.4;Parent=Physo157982;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 ensembl protein_coding_gene 71825 72431 . - . ID=Physo157983;biotype=protein_coding;external_name=C_scaffold_73000013;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 71825 72431 . - . ID=Physo157983;Parent=Physo157983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 71825 71904 . - 0 ID=Physo157983;Parent=Physo157983;rank=4 scaffold_73 . exon 71825 71904 . - . ID=Physo157983.4;Parent=Physo157983;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 . CDS 72028 72028 . - 0 ID=Physo157983;Parent=Physo157983;rank=3 scaffold_73 . exon 72028 72028 . - . ID=Physo157983.3;Parent=Physo157983;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_73 . CDS 72078 72153 . - 0 ID=Physo157983;Parent=Physo157983;rank=2 scaffold_73 . exon 72078 72153 . - . ID=Physo157983.2;Parent=Physo157983;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 72217 72431 . - 0 ID=Physo157983;Parent=Physo157983;rank=1 scaffold_73 . exon 72217 72431 . - . ID=Physo157983.1;Parent=Physo157983;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . biological_region 82908 82910 0.999 + . logic_name=eponine scaffold_73 . repeat_region 85369 85396 . ? . description=dust scaffold_73 . repeat_region 88079 88086 . ? . description=dust scaffold_73 ensembl protein_coding_gene 81001 84598 . - . ID=Physo139355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730024;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 81001 84598 . - . ID=Physo139355;Parent=Physo139355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 81001 81216 . - 0 ID=Physo139355;Parent=Physo139355;rank=8 scaffold_73 . exon 81001 81216 . - . ID=Physo139355.8;Parent=Physo139355;constitutive=1;rank=8 scaffold_73 . CDS 81285 81548 . - 0 ID=Physo139355;Parent=Physo139355;rank=7 scaffold_73 . exon 81285 81548 . - . ID=Physo139355.7;Parent=Physo139355;constitutive=1;rank=7 scaffold_73 . CDS 81733 82588 . - 0 ID=Physo139355;Parent=Physo139355;rank=6 scaffold_73 . exon 81733 82588 . - . ID=Physo139355.6;Parent=Physo139355;constitutive=1;ensembl_phase=2;rank=6 scaffold_73 . CDS 82794 83070 . - 0 ID=Physo139355;Parent=Physo139355;rank=5 scaffold_73 . exon 82794 83070 . - . ID=Physo139355.5;Parent=Physo139355;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_73 . CDS 83132 83375 . - 0 ID=Physo139355;Parent=Physo139355;rank=4 scaffold_73 . exon 83132 83375 . - . ID=Physo139355.4;Parent=Physo139355;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_73 . CDS 83448 84300 . - 0 ID=Physo139355;Parent=Physo139355;rank=3 scaffold_73 . exon 83448 84300 . - . ID=Physo139355.3;Parent=Physo139355;constitutive=1;ensembl_phase=2;rank=3 scaffold_73 . CDS 84374 84430 . - 0 ID=Physo139355;Parent=Physo139355;rank=2 scaffold_73 . exon 84374 84430 . - . ID=Physo139355.2;Parent=Physo139355;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_73 . CDS 84500 84513 . - 0 ID=Physo139355;Parent=Physo139355;rank=1 scaffold_73 . exon 84500 84598 . - . ID=Physo139355.1;Parent=Physo139355;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_73 ensembl protein_coding_gene 85334 87225 . + . ID=Physo139356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730025;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 85334 87225 . + . ID=Physo139356;Parent=Physo139356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 85334 85732 . + 0 ID=Physo139356;Parent=Physo139356;rank=1 scaffold_73 . exon 85334 85732 . + . ID=Physo139356.1;Parent=Physo139356;constitutive=1;rank=1 scaffold_73 . CDS 85801 86546 . + 0 ID=Physo139356;Parent=Physo139356;rank=2 scaffold_73 . exon 85801 86546 . + . ID=Physo139356.2;Parent=Physo139356;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_73 . CDS 86620 86790 . + 0 ID=Physo139356;Parent=Physo139356;rank=3 scaffold_73 . exon 86620 86790 . + . ID=Physo139356.3;Parent=Physo139356;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_73 . CDS 86858 87053 . + 0 ID=Physo139356;Parent=Physo139356;rank=4 scaffold_73 . exon 86858 87053 . + . ID=Physo139356.4;Parent=Physo139356;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . CDS 87130 87225 . + 0 ID=Physo139356;Parent=Physo139356;rank=5 scaffold_73 . exon 87130 87225 . + . ID=Physo139356.5;Parent=Physo139356;constitutive=1;rank=5 scaffold_73 ensembl protein_coding_gene 90202 91026 . + . ID=Physo109205;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_730001;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 90202 91026 . + . ID=Physo109205;Parent=Physo109205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 90202 90254 . + 0 ID=Physo109205;Parent=Physo109205;rank=1 scaffold_73 . exon 90202 90254 . + . ID=Physo109205.1;Parent=Physo109205;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 90300 90633 . + 0 ID=Physo109205;Parent=Physo109205;rank=2 scaffold_73 . exon 90300 90633 . + . ID=Physo109205.2;Parent=Physo109205;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 90709 90792 . + 0 ID=Physo109205;Parent=Physo109205;rank=3 scaffold_73 . exon 90709 90792 . + . ID=Physo109205.3;Parent=Physo109205;constitutive=1;rank=3 scaffold_73 . CDS 90862 91026 . + 0 ID=Physo109205;Parent=Physo109205;rank=4 scaffold_73 . exon 90862 91026 . + . ID=Physo109205.4;Parent=Physo109205;constitutive=1;rank=4 scaffold_73 ensembl protein_coding_gene 96748 101464 . + . ID=Physo109206;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_730002;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 96748 101464 . + . ID=Physo109206;Parent=Physo109206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 96748 96882 . + 0 ID=Physo109206;Parent=Physo109206;rank=1 scaffold_73 . exon 96748 96882 . + . ID=Physo109206.1;Parent=Physo109206;constitutive=1;rank=1 scaffold_73 . CDS 96959 101377 . + 0 ID=Physo109206;Parent=Physo109206;rank=2 scaffold_73 . exon 96959 101464 . + . ID=Physo109206.2;Parent=Physo109206;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_73 ensembl protein_coding_gene 91295 93538 . - . ID=Physo139358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730027;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 91295 93538 . - . ID=Physo139358;Parent=Physo139358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 91295 93538 . - . ID=Physo139358.1;Parent=Physo139358;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_73 . CDS 91418 93538 . - 0 ID=Physo139358;Parent=Physo139358;rank=1 scaffold_73 . biological_region 98455 98456 0.999 + . logic_name=eponine scaffold_73 . biological_region 99358 99364 0.999 - . logic_name=eponine scaffold_73 . biological_region 100042 100042 0.999 - . logic_name=eponine scaffold_73 . biological_region 100698 100699 0.999 + . logic_name=eponine scaffold_73 . biological_region 101664 101668 0.999 + . logic_name=eponine scaffold_73 . biological_region 101741 101743 0.999 + . logic_name=eponine scaffold_73 . biological_region 101812 101814 0.999 - . logic_name=eponine scaffold_73 . repeat_region 104081 104090 . ? . description=dust scaffold_73 . biological_region 105157 105159 0.999 + . logic_name=eponine scaffold_73 . biological_region 105414 105415 0.999 - . logic_name=eponine scaffold_73 . repeat_region 105495 105538 . ? . description=trf scaffold_73 . repeat_region 105501 105550 . ? . description=trf scaffold_73 . repeat_region 105514 105559 . ? . description=trf scaffold_73 . repeat_region 105771 105847 . ? . description=trf scaffold_73 . repeat_region 105821 105877 . ? . description=dust scaffold_73 . biological_region 105961 105964 0.999 - . logic_name=eponine scaffold_73 ensembl protein_coding_gene 101481 102421 . - . ID=Physo139360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730029;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 101481 102421 . - . ID=Physo139360;Parent=Physo139360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 101481 102421 . - . ID=Physo139360.1;Parent=Physo139360;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_73 . CDS 101483 102421 . - 0 ID=Physo139360;Parent=Physo139360;rank=1 scaffold_73 ensembl protein_coding_gene 102542 103644 . - . ID=Physo139361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730030;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 102542 103644 . - . ID=Physo139361;Parent=Physo139361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 102542 103480 . - . ID=Physo139361.2;Parent=Physo139361;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_73 . CDS 102591 103480 . - 0 ID=Physo139361;Parent=Physo139361;rank=2 scaffold_73 . CDS 103524 103644 . - 0 ID=Physo139361;Parent=Physo139361;rank=1 scaffold_73 . exon 103524 103644 . - . ID=Physo139361.1;Parent=Physo139361;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 ensembl protein_coding_gene 105080 108032 . + . ID=Physo139362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730031;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 105080 108032 . + . ID=Physo139362;Parent=Physo139362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 105080 108032 . + . ID=Physo139362.1;Parent=Physo139362;constitutive=1;ensembl_phase=-1;rank=1 scaffold_73 . CDS 105129 108032 . + 0 ID=Physo139362;Parent=Physo139362;rank=1 scaffold_73 ensembl protein_coding_gene 115672 116430 . - . ID=Physo109207;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_730003;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 115672 116430 . - . ID=Physo109207;Parent=Physo109207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 115672 116361 . - . ID=Physo109207.2;Parent=Physo109207;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_73 . CDS 115768 116361 . - 0 ID=Physo109207;Parent=Physo109207;rank=2 scaffold_73 . CDS 116416 116430 . - 0 ID=Physo109207;Parent=Physo109207;rank=1 scaffold_73 . exon 116416 116430 . - . ID=Physo109207.1;Parent=Physo109207;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 108442 109051 . + . ID=Physo139363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730032;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 108442 109051 . + . ID=Physo139363;Parent=Physo139363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 108442 108714 . + 0 ID=Physo139363;Parent=Physo139363;rank=1 scaffold_73 . exon 108442 108714 . + . ID=Physo139363.1;Parent=Physo139363;constitutive=1;rank=1 scaffold_73 . CDS 108821 109051 . + 0 ID=Physo139363;Parent=Physo139363;rank=2 scaffold_73 . exon 108821 109051 . + . ID=Physo139363.2;Parent=Physo139363;constitutive=1;rank=2 scaffold_73 ensembl protein_coding_gene 109256 110308 . + . ID=Physo139364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730033;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 109256 110308 . + . ID=Physo139364;Parent=Physo139364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 109256 110308 . + 0 ID=Physo139364;Parent=Physo139364;rank=1 scaffold_73 . exon 109256 110308 . + . ID=Physo139364.1;Parent=Physo139364;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 110438 110950 . - . ID=Physo139365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730034;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 110438 110950 . - . ID=Physo139365;Parent=Physo139365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 110438 110950 . - 0 ID=Physo139365;Parent=Physo139365;rank=1 scaffold_73 . exon 110438 110950 . - . ID=Physo139365.1;Parent=Physo139365;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 111580 112704 . + . ID=Physo139366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730035;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 111580 112704 . + . ID=Physo139366;Parent=Physo139366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 111580 112647 . + 0 ID=Physo139366;Parent=Physo139366;rank=1 scaffold_73 . exon 111580 112704 . + . ID=Physo139366.1;Parent=Physo139366;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_73 ensembl protein_coding_gene 114014 115498 . + . ID=Physo139367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730036;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 114014 115498 . + . ID=Physo139367;Parent=Physo139367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 114014 115498 . + 0 ID=Physo139367;Parent=Physo139367;rank=1 scaffold_73 . exon 114014 115498 . + . ID=Physo139367.1;Parent=Physo139367;constitutive=1;rank=1 scaffold_73 . repeat_region 118330 118338 . ? . description=dust scaffold_73 . biological_region 118736 118743 0.999 - . logic_name=eponine scaffold_73 . repeat_region 119398 119414 . ? . description=dust scaffold_73 . repeat_region 121061 121069 . ? . description=dust scaffold_73 . repeat_region 124189 124196 . ? . description=dust scaffold_73 . repeat_region 125327 125337 . ? . description=dust scaffold_73 . biological_region 125683 125684 0.999 + . logic_name=eponine scaffold_73 . repeat_region 126155 126175 . ? . description=trf scaffold_73 . repeat_region 126203 126278 . ? . description=dust scaffold_73 . repeat_region 126341 126360 . ? . description=trf scaffold_73 . repeat_region 126484 126504 . ? . description=trf scaffold_73 . repeat_region 126548 126567 . ? . description=trf scaffold_73 . repeat_region 126745 126768 . ? . description=trf scaffold_73 ensembl protein_coding_gene 119571 120533 . - . ID=Physo139369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730038;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 119571 120533 . - . ID=Physo139369;Parent=Physo139369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 119571 120533 . - 0 ID=Physo139369;Parent=Physo139369;rank=1 scaffold_73 . exon 119571 120533 . - . ID=Physo139369.1;Parent=Physo139369;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 124337 125830 . - . ID=Physo139370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730039;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 124337 125830 . - . ID=Physo139370;Parent=Physo139370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 124337 124850 . - 0 ID=Physo139370;Parent=Physo139370;rank=6 scaffold_73 . exon 124337 124850 . - . ID=Physo139370.6;Parent=Physo139370;constitutive=1;ensembl_phase=2;rank=6 scaffold_73 . CDS 124922 124995 . - 0 ID=Physo139370;Parent=Physo139370;rank=5 scaffold_73 . exon 124922 124995 . - . ID=Physo139370.5;Parent=Physo139370;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_73 . CDS 125067 125145 . - 0 ID=Physo139370;Parent=Physo139370;rank=4 scaffold_73 . exon 125067 125145 . - . ID=Physo139370.4;Parent=Physo139370;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . CDS 125215 125300 . - 0 ID=Physo139370;Parent=Physo139370;rank=3 scaffold_73 . exon 125215 125300 . - . ID=Physo139370.3;Parent=Physo139370;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . CDS 125365 125400 . - 0 ID=Physo139370;Parent=Physo139370;rank=2 scaffold_73 . exon 125365 125400 . - . ID=Physo139370.2;Parent=Physo139370;constitutive=1;rank=2 scaffold_73 . CDS 125609 125830 . - 0 ID=Physo139370;Parent=Physo139370;rank=1 scaffold_73 . exon 125609 125830 . - . ID=Physo139370.1;Parent=Physo139370;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 126011 128012 . + . ID=Physo139371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730040;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 126011 128012 . + . ID=Physo139371;Parent=Physo139371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 126011 127047 . + 0 ID=Physo139371;Parent=Physo139371;rank=1 scaffold_73 . exon 126011 127047 . + . ID=Physo139371.1;Parent=Physo139371;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 127154 127418 . + 0 ID=Physo139371;Parent=Physo139371;rank=2 scaffold_73 . exon 127154 127418 . + . ID=Physo139371.2;Parent=Physo139371;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 127479 127802 . + 0 ID=Physo139371;Parent=Physo139371;rank=3 scaffold_73 . CDS 127870 127903 . + 0 ID=Physo139371;Parent=Physo139371;rank=4 scaffold_73 . CDS 127993 128012 . + 0 ID=Physo139371;Parent=Physo139371;rank=5 scaffold_73 ensembl protein_coding_gene 135057 137933 . - . ID=Physo109208;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_730004;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 135057 137933 . - . ID=Physo109208;Parent=Physo109208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 135057 135372 . - . ID=Physo109208.4;Parent=Physo109208;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_73 . CDS 135187 135372 . - 0 ID=Physo109208;Parent=Physo109208;rank=4 scaffold_73 . CDS 135450 136230 . - 0 ID=Physo109208;Parent=Physo109208;rank=3 scaffold_73 . exon 135450 136230 . - . ID=Physo109208.3;Parent=Physo109208;constitutive=1;ensembl_phase=2;rank=3 scaffold_73 . CDS 136306 137813 . - 0 ID=Physo109208;Parent=Physo109208;rank=2 scaffold_73 . exon 136306 137813 . - . ID=Physo109208.2;Parent=Physo109208;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_73 . CDS 137835 137933 . - 0 ID=Physo109208;Parent=Physo109208;rank=1 scaffold_73 . exon 127479 127802 . + . ID=Physo139371.3;Parent=Physo139371;constitutive=1;rank=3 scaffold_73 . exon 127870 127903 . + . ID=Physo139371.4;Parent=Physo139371;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_73 . exon 127993 128012 . + . ID=Physo139371.5;Parent=Physo139371;constitutive=1;ensembl_phase=1;rank=5 scaffold_73 ensembl protein_coding_gene 129166 130601 . - . ID=Physo139372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730041;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 129166 130601 . - . ID=Physo139372;Parent=Physo139372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 129166 129258 . - 0 ID=Physo139372;Parent=Physo139372;rank=6 scaffold_73 . exon 129166 129258 . - . ID=Physo139372.6;Parent=Physo139372;constitutive=1;rank=6 scaffold_73 . CDS 129332 129574 . - 0 ID=Physo139372;Parent=Physo139372;rank=5 scaffold_73 . exon 129332 129574 . - . ID=Physo139372.5;Parent=Physo139372;constitutive=1;rank=5 scaffold_73 . CDS 129649 129827 . - 0 ID=Physo139372;Parent=Physo139372;rank=4 scaffold_73 . exon 129649 129827 . - . ID=Physo139372.4;Parent=Physo139372;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 . CDS 129913 130091 . - 0 ID=Physo139372;Parent=Physo139372;rank=3 scaffold_73 . exon 129913 130091 . - . ID=Physo139372.3;Parent=Physo139372;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_73 . CDS 130180 130419 . - 0 ID=Physo139372;Parent=Physo139372;rank=2 scaffold_73 . exon 130180 130419 . - . ID=Physo139372.2;Parent=Physo139372;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_73 . CDS 130531 130601 . - 0 ID=Physo139372;Parent=Physo139372;rank=1 scaffold_73 . exon 130531 130601 . - . ID=Physo139372.1;Parent=Physo139372;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 ensembl protein_coding_gene 131217 132919 . - . ID=Physo139373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730042;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 131217 132919 . - . ID=Physo139373;Parent=Physo139373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 131217 131279 . - 0 ID=Physo139373;Parent=Physo139373;rank=6 scaffold_73 . exon 131217 131279 . - . ID=Physo139373.6;Parent=Physo139373;constitutive=1;rank=6 scaffold_73 . CDS 131337 131381 . - 0 ID=Physo139373;Parent=Physo139373;rank=5 scaffold_73 . exon 131337 131381 . - . ID=Physo139373.5;Parent=Physo139373;constitutive=1;rank=5 scaffold_73 . CDS 131454 131717 . - 0 ID=Physo139373;Parent=Physo139373;rank=4 scaffold_73 . exon 131454 131717 . - . ID=Physo139373.4;Parent=Physo139373;constitutive=1;rank=4 scaffold_73 . CDS 131793 131861 . - 0 ID=Physo139373;Parent=Physo139373;rank=3 scaffold_73 . exon 131793 131861 . - . ID=Physo139373.3;Parent=Physo139373;constitutive=1;rank=3 scaffold_73 . CDS 131932 132615 . - 0 ID=Physo139373;Parent=Physo139373;rank=2 scaffold_73 . exon 131932 132615 . - . ID=Physo139373.2;Parent=Physo139373;constitutive=1;rank=2 scaffold_73 . CDS 132695 132919 . - 0 ID=Physo139373;Parent=Physo139373;rank=1 scaffold_73 . exon 132695 132919 . - . ID=Physo139373.1;Parent=Physo139373;constitutive=1;rank=1 scaffold_73 . repeat_region 137696 137748 . ? . description=trf scaffold_73 . biological_region 137705 137708 0.999 + . logic_name=eponine scaffold_73 . repeat_region 137942 137975 . ? . description=dust scaffold_73 . repeat_region 137942 137975 . ? . description=trf scaffold_73 . repeat_region 139813 139977 . ? . description=trf scaffold_73 . repeat_region 141466 141549 . + . description=(TCG)n scaffold_73 . biological_region 145663 145665 0.999 + . logic_name=eponine scaffold_73 . exon 137835 137933 . - . ID=Physo109208.1;Parent=Physo109208;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 145321 147142 . - . ID=Physo109209;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_730005;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 145321 147142 . - . ID=Physo109209;Parent=Physo109209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 145321 147142 . - . ID=Physo109209.1;Parent=Physo109209;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_73 . CDS 145477 147141 . - 0 ID=Physo109209;Parent=Physo109209;rank=1 scaffold_73 ensembl protein_coding_gene 154895 155795 . + . ID=Physo109210;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_730006;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 154895 155795 . + . ID=Physo109210;Parent=Physo109210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 154895 154933 . + 0 ID=Physo109210;Parent=Physo109210;rank=1 scaffold_73 . exon 154895 154933 . + . ID=Physo109210.1;Parent=Physo109210;constitutive=1;rank=1 scaffold_73 . CDS 155008 155721 . + 0 ID=Physo109210;Parent=Physo109210;rank=2 scaffold_73 . exon 155008 155795 . + . ID=Physo109210.2;Parent=Physo109210;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_73 ensembl protein_coding_gene 156255 157262 . + . ID=Physo120208;biotype=protein_coding;external_name=estExt_Genewise1.C_730040;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 156255 157262 . + . ID=Physo120208;Parent=Physo120208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 156255 156898 . + . ID=Physo120208.1;Parent=Physo120208;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_73 . CDS 156279 156898 . + 0 ID=Physo120208;Parent=Physo120208;rank=1 scaffold_73 . CDS 157085 157262 . + 0 ID=Physo120208;Parent=Physo120208;rank=2 scaffold_73 ensembl protein_coding_gene 152177 152891 . + . ID=Physo139376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730045;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 152177 152891 . + . ID=Physo139376;Parent=Physo139376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 152177 152891 . + . ID=Physo139376.1;Parent=Physo139376;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_73 . CDS 152178 152735 . + 0 ID=Physo139376;Parent=Physo139376;rank=1 scaffold_73 . biological_region 162377 162382 0.999 + . logic_name=eponine scaffold_73 . repeat_region 162507 162553 . ? . description=trf scaffold_73 . exon 157085 157262 . + . ID=Physo120208.2;Parent=Physo120208;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 ensembl protein_coding_gene 161296 162621 . - . ID=Physo139379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730048;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 161296 162621 . - . ID=Physo139379;Parent=Physo139379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 161296 161415 . - 0 ID=Physo139379;Parent=Physo139379;rank=6 scaffold_73 . exon 161296 161415 . - . ID=Physo139379.6;Parent=Physo139379;constitutive=1;rank=6 scaffold_73 . CDS 161483 161501 . - 0 ID=Physo139379;Parent=Physo139379;rank=5 scaffold_73 . exon 161483 161501 . - . ID=Physo139379.5;Parent=Physo139379;constitutive=1;ensembl_phase=2;rank=5 scaffold_73 . CDS 161712 161974 . - 0 ID=Physo139379;Parent=Physo139379;rank=4 scaffold_73 . exon 161712 161974 . - . ID=Physo139379.4;Parent=Physo139379;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_73 . CDS 162054 162148 . - 0 ID=Physo139379;Parent=Physo139379;rank=3 scaffold_73 . exon 162054 162148 . - . ID=Physo139379.3;Parent=Physo139379;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 162210 162309 . - 0 ID=Physo139379;Parent=Physo139379;rank=2 scaffold_73 . exon 162210 162309 . - . ID=Physo139379.2;Parent=Physo139379;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_73 . CDS 162379 162621 . - 0 ID=Physo139379;Parent=Physo139379;rank=1 scaffold_73 . exon 162379 162621 . - . ID=Physo139379.1;Parent=Physo139379;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 163059 164069 . + . ID=Physo139380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730049;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 163059 164069 . + . ID=Physo139380;Parent=Physo139380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 163059 163066 . + 0 ID=Physo139380;Parent=Physo139380;rank=1 scaffold_73 . exon 163059 163066 . + . ID=Physo139380.1;Parent=Physo139380;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 163140 163350 . + 0 ID=Physo139380;Parent=Physo139380;rank=2 scaffold_73 . exon 163140 163350 . + . ID=Physo139380.2;Parent=Physo139380;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 163425 163499 . + 0 ID=Physo139380;Parent=Physo139380;rank=3 scaffold_73 . exon 163425 163499 . + . ID=Physo139380.3;Parent=Physo139380;constitutive=1;rank=3 scaffold_73 . CDS 163579 163722 . + 0 ID=Physo139380;Parent=Physo139380;rank=4 scaffold_73 . exon 163579 163722 . + . ID=Physo139380.4;Parent=Physo139380;constitutive=1;rank=4 scaffold_73 . CDS 163792 163869 . + 0 ID=Physo139380;Parent=Physo139380;rank=5 scaffold_73 . exon 163792 163869 . + . ID=Physo139380.5;Parent=Physo139380;constitutive=1;rank=5 scaffold_73 . CDS 163935 164069 . + 0 ID=Physo139380;Parent=Physo139380;rank=6 scaffold_73 . exon 163935 164069 . + . ID=Physo139380.6;Parent=Physo139380;constitutive=1;rank=6 scaffold_73 ensembl protein_coding_gene 166293 167424 . - . ID=Physo139381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730050;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 166293 167424 . - . ID=Physo139381;Parent=Physo139381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 166293 166566 . - 0 ID=Physo139381;Parent=Physo139381;rank=4 scaffold_73 . exon 166293 166566 . - . ID=Physo139381.4;Parent=Physo139381;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . CDS 166635 166822 . - 0 ID=Physo139381;Parent=Physo139381;rank=3 scaffold_73 . CDS 166885 167015 . - 0 ID=Physo139381;Parent=Physo139381;rank=2 scaffold_73 . CDS 167091 167424 . - 0 ID=Physo139381;Parent=Physo139381;rank=1 scaffold_73 . repeat_region 166570 166577 . ? . description=dust scaffold_73 . repeat_region 168820 168833 . ? . description=dust scaffold_73 . repeat_region 172624 172673 . ? . description=dust scaffold_73 . repeat_region 175603 175813 . ? . description=dust scaffold_73 . exon 166635 166822 . - . ID=Physo139381.3;Parent=Physo139381;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . exon 166885 167015 . - . ID=Physo139381.2;Parent=Physo139381;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . exon 167091 167424 . - . ID=Physo139381.1;Parent=Physo139381;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 ensembl protein_coding_gene 171672 172622 . - . ID=Physo139382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730051;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 171672 172622 . - . ID=Physo139382;Parent=Physo139382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 171672 172622 . - 0 ID=Physo139382;Parent=Physo139382;rank=1 scaffold_73 . exon 171672 172622 . - . ID=Physo139382.1;Parent=Physo139382;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 175188 176344 . - . ID=Physo139383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730052;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 175188 176344 . - . ID=Physo139383;Parent=Physo139383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 175188 175598 . - 0 ID=Physo139383;Parent=Physo139383;rank=2 scaffold_73 . exon 175188 175598 . - . ID=Physo139383.2;Parent=Physo139383;constitutive=1;rank=2 scaffold_73 . CDS 175853 176344 . - 0 ID=Physo139383;Parent=Physo139383;rank=1 scaffold_73 . exon 175853 176344 . - . ID=Physo139383.1;Parent=Physo139383;constitutive=1;rank=1 scaffold_73 . biological_region 177697 177698 0.999 + . logic_name=eponine scaffold_73 . biological_region 183073 183073 0.999 + . logic_name=eponine scaffold_73 ensembl protein_coding_gene 182861 184681 . - . ID=Physo139384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730053;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 182861 184681 . - . ID=Physo139384;Parent=Physo139384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 182861 184681 . - 0 ID=Physo139384;Parent=Physo139384;rank=1 scaffold_73 . exon 182861 184681 . - . ID=Physo139384.1;Parent=Physo139384;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 185963 186875 . - . ID=Physo139385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730054;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 185963 186875 . - . ID=Physo139385;Parent=Physo139385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 185963 186015 . - 0 ID=Physo139385;Parent=Physo139385;rank=3 scaffold_73 . exon 185963 186015 . - . ID=Physo139385.3;Parent=Physo139385;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 186074 186477 . - 0 ID=Physo139385;Parent=Physo139385;rank=2 scaffold_73 . exon 186074 186477 . - . ID=Physo139385.2;Parent=Physo139385;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 186601 186875 . - 0 ID=Physo139385;Parent=Physo139385;rank=1 scaffold_73 . repeat_region 189591 189670 . ? . description=dust scaffold_73 . repeat_region 189603 189670 . ? . description=trf scaffold_73 . repeat_region 189604 189670 . ? . description=trf scaffold_73 . repeat_region 189604 189671 . ? . description=trf scaffold_73 . repeat_region 189624 189688 . ? . description=trf scaffold_73 . repeat_region 195388 195444 . ? . description=dust scaffold_73 . exon 186601 186875 . - . ID=Physo139385.1;Parent=Physo139385;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 ensembl protein_coding_gene 191946 193427 . + . ID=Physo139386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730055;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 191946 193427 . + . ID=Physo139386;Parent=Physo139386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 191946 193427 . + 0 ID=Physo139386;Parent=Physo139386;rank=1 scaffold_73 . exon 191946 193427 . + . ID=Physo139386.1;Parent=Physo139386;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 193604 194038 . + . ID=Physo139387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730056;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 193604 194038 . + . ID=Physo139387;Parent=Physo139387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 193604 194038 . + 0 ID=Physo139387;Parent=Physo139387;rank=1 scaffold_73 . exon 193604 194038 . + . ID=Physo139387.1;Parent=Physo139387;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 194606 195728 . + . ID=Physo139388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730057;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 194606 195728 . + . ID=Physo139388;Parent=Physo139388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 194606 194801 . + . ID=Physo139388.1;Parent=Physo139388;constitutive=1;ensembl_phase=-1;rank=1 scaffold_73 . CDS 194637 194801 . + 0 ID=Physo139388;Parent=Physo139388;rank=1 scaffold_73 . CDS 194921 195138 . + 0 ID=Physo139388;Parent=Physo139388;rank=2 scaffold_73 . exon 194921 195138 . + . ID=Physo139388.2;Parent=Physo139388;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_73 . CDS 195212 195373 . + 0 ID=Physo139388;Parent=Physo139388;rank=3 scaffold_73 . exon 195212 195373 . + . ID=Physo139388.3;Parent=Physo139388;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_73 . CDS 195450 195597 . + 0 ID=Physo139388;Parent=Physo139388;rank=4 scaffold_73 . exon 195450 195728 . + . ID=Physo139388.4;Parent=Physo139388;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_73 ensembl protein_coding_gene 195785 197918 . - . ID=Physo139389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730058;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 195785 197918 . - . ID=Physo139389;Parent=Physo139389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 195785 196623 . - 0 ID=Physo139389;Parent=Physo139389;rank=2 scaffold_73 . exon 195785 196623 . - . ID=Physo139389.2;Parent=Physo139389;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 196709 197918 . - 0 ID=Physo139389;Parent=Physo139389;rank=1 scaffold_73 . biological_region 201450 201453 0.999 + . logic_name=eponine scaffold_73 ensembl protein_coding_gene 198316 199554 . + . ID=Physo120215;biotype=protein_coding;external_name=estExt_Genewise1.C_730047;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 198316 199554 . + . ID=Physo120215;Parent=Physo120215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 198316 198398 . + . ID=Physo120215.1;Parent=Physo120215;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_73 . exon 198447 198540 . + . ID=Physo120215.2;Parent=Physo120215;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_73 . exon 198605 198778 . + . ID=Physo120215.3;Parent=Physo120215;constitutive=1;ensembl_phase=-1;rank=3 scaffold_73 . CDS 198710 198778 . + 0 ID=Physo120215;Parent=Physo120215;rank=1 scaffold_73 . CDS 198847 199554 . + 0 ID=Physo120215;Parent=Physo120215;rank=2 scaffold_73 . exon 198847 199554 . + . ID=Physo120215.4;Parent=Physo120215;constitutive=1;rank=4 scaffold_73 . exon 196709 197918 . - . ID=Physo139389.1;Parent=Physo139389;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 ensembl protein_coding_gene 199720 203333 . + . ID=Physo139392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730061;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 199720 203333 . + . ID=Physo139392;Parent=Physo139392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 199720 200730 . + 0 ID=Physo139392;Parent=Physo139392;rank=1 scaffold_73 . exon 199720 200730 . + . ID=Physo139392.1;Parent=Physo139392;constitutive=1;rank=1 scaffold_73 . CDS 200822 202294 . + 0 ID=Physo139392;Parent=Physo139392;rank=2 scaffold_73 . exon 200822 202294 . + . ID=Physo139392.2;Parent=Physo139392;constitutive=1;rank=2 scaffold_73 . CDS 202483 202790 . + 0 ID=Physo139392;Parent=Physo139392;rank=3 scaffold_73 . exon 202483 202790 . + . ID=Physo139392.3;Parent=Physo139392;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_73 . CDS 202862 203333 . + 0 ID=Physo139392;Parent=Physo139392;rank=4 scaffold_73 . exon 202862 203333 . + . ID=Physo139392.4;Parent=Physo139392;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . repeat_region 209378 209385 . ? . description=dust scaffold_73 ensembl protein_coding_gene 210690 211487 . + . ID=Physo139393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730062;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 210690 211487 . + . ID=Physo139393;Parent=Physo139393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 210690 210711 . + 0 ID=Physo139393;Parent=Physo139393;rank=1 scaffold_73 . exon 210690 210711 . + . ID=Physo139393.1;Parent=Physo139393;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 210737 210751 . + 0 ID=Physo139393;Parent=Physo139393;rank=2 scaffold_73 . exon 210737 210751 . + . ID=Physo139393.2;Parent=Physo139393;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 211117 211487 . + 0 ID=Physo139393;Parent=Physo139393;rank=3 scaffold_73 . exon 211117 211487 . + . ID=Physo139393.3;Parent=Physo139393;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 ensembl protein_coding_gene 211533 214109 . - . ID=Physo139394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730063;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 211533 214109 . - . ID=Physo139394;Parent=Physo139394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 211533 213905 . - 0 ID=Physo139394;Parent=Physo139394;rank=1 scaffold_73 . exon 211533 214109 . - . ID=Physo139394.1;Parent=Physo139394;constitutive=1;ensembl_phase=-1;rank=1 scaffold_73 ensembl protein_coding_gene 214679 216485 . + . ID=Physo139395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730064;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 214679 216485 . + . ID=Physo139395;Parent=Physo139395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 214679 214762 . + 0 ID=Physo139395;Parent=Physo139395;rank=1 scaffold_73 . exon 214679 214762 . + . ID=Physo139395.1;Parent=Physo139395;constitutive=1;rank=1 scaffold_73 . CDS 214825 214876 . + 0 ID=Physo139395;Parent=Physo139395;rank=2 scaffold_73 . exon 214825 214876 . + . ID=Physo139395.2;Parent=Physo139395;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_73 . CDS 214942 215312 . + 0 ID=Physo139395;Parent=Physo139395;rank=3 scaffold_73 . exon 214942 215312 . + . ID=Physo139395.3;Parent=Physo139395;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 215385 215497 . + 0 ID=Physo139395;Parent=Physo139395;rank=4 scaffold_73 . exon 215385 215497 . + . ID=Physo139395.4;Parent=Physo139395;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_73 . CDS 215565 215606 . + 0 ID=Physo139395;Parent=Physo139395;rank=5 scaffold_73 . CDS 215674 215810 . + 0 ID=Physo139395;Parent=Physo139395;rank=6 scaffold_73 . CDS 215876 216229 . + 0 ID=Physo139395;Parent=Physo139395;rank=7 scaffold_73 . CDS 216445 216485 . + 0 ID=Physo139395;Parent=Physo139395;rank=8 scaffold_73 . biological_region 219159 219161 0.999 - . logic_name=eponine scaffold_73 . biological_region 219614 219617 0.999 + . logic_name=eponine scaffold_73 . biological_region 224293 224296 0.999 - . logic_name=eponine scaffold_73 . biological_region 224316 224320 0.999 - . logic_name=eponine scaffold_73 . biological_region 224439 224444 0.999 - . logic_name=eponine scaffold_73 . exon 215565 215606 . + . ID=Physo139395.5;Parent=Physo139395;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_73 . exon 215674 215810 . + . ID=Physo139395.6;Parent=Physo139395;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_73 . exon 215876 216229 . + . ID=Physo139395.7;Parent=Physo139395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_73 . exon 216445 216485 . + . ID=Physo139395.8;Parent=Physo139395;constitutive=1;ensembl_phase=1;rank=8 scaffold_73 ensembl protein_coding_gene 216869 218524 . - . ID=Physo139396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730065;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 216869 218524 . - . ID=Physo139396;Parent=Physo139396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 216869 218524 . - 0 ID=Physo139396;Parent=Physo139396;rank=1 scaffold_73 . exon 216869 218524 . - . ID=Physo139396.1;Parent=Physo139396;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 218927 223371 . + . ID=Physo139397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730066;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 218927 223371 . + . ID=Physo139397;Parent=Physo139397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 218927 220435 . + 0 ID=Physo139397;Parent=Physo139397;rank=1 scaffold_73 . exon 218927 220435 . + . ID=Physo139397.1;Parent=Physo139397;constitutive=1;rank=1 scaffold_73 . CDS 220606 222132 . + 0 ID=Physo139397;Parent=Physo139397;rank=2 scaffold_73 . exon 220606 222132 . + . ID=Physo139397.2;Parent=Physo139397;constitutive=1;rank=2 scaffold_73 . CDS 222301 222339 . + 0 ID=Physo139397;Parent=Physo139397;rank=3 scaffold_73 . exon 222301 222339 . + . ID=Physo139397.3;Parent=Physo139397;constitutive=1;rank=3 scaffold_73 . CDS 222451 223371 . + 0 ID=Physo139397;Parent=Physo139397;rank=4 scaffold_73 . exon 222451 223371 . + . ID=Physo139397.4;Parent=Physo139397;constitutive=1;rank=4 scaffold_73 ensembl protein_coding_gene 223899 224945 . - . ID=Physo139398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730067;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 223899 224945 . - . ID=Physo139398;Parent=Physo139398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 223899 224660 . - . ID=Physo139398.2;Parent=Physo139398;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_73 . CDS 224003 224660 . - 0 ID=Physo139398;Parent=Physo139398;rank=2 scaffold_73 . CDS 224938 224945 . - 0 ID=Physo139398;Parent=Physo139398;rank=1 scaffold_73 . exon 224938 224945 . - . ID=Physo139398.1;Parent=Physo139398;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 ensembl protein_coding_gene 225295 226833 . + . ID=Physo139399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730068;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 225295 226833 . + . ID=Physo139399;Parent=Physo139399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 225295 225594 . + 0 ID=Physo139399;Parent=Physo139399;rank=1 scaffold_73 . exon 225295 225594 . + . ID=Physo139399.1;Parent=Physo139399;constitutive=1;rank=1 scaffold_73 . CDS 225763 225801 . + 0 ID=Physo139399;Parent=Physo139399;rank=2 scaffold_73 . CDS 225913 226833 . + 0 ID=Physo139399;Parent=Physo139399;rank=3 scaffold_73 . repeat_region 228263 228318 . ? . description=dust scaffold_73 . repeat_region 233434 233441 . ? . description=dust scaffold_73 . repeat_region 233775 233824 . ? . description=dust scaffold_73 . exon 225763 225801 . + . ID=Physo139399.2;Parent=Physo139399;constitutive=1;rank=2 scaffold_73 . exon 225913 226833 . + . ID=Physo139399.3;Parent=Physo139399;constitutive=1;rank=3 scaffold_73 ensembl protein_coding_gene 227361 229888 . - . ID=Physo139400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730069;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 227361 229888 . - . ID=Physo139400;Parent=Physo139400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 227361 228205 . - . ID=Physo139400.3;Parent=Physo139400;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_73 . CDS 227465 228205 . - 0 ID=Physo139400;Parent=Physo139400;rank=3 scaffold_73 . CDS 228400 228462 . - 0 ID=Physo139400;Parent=Physo139400;rank=2 scaffold_73 . exon 228400 228462 . - . ID=Physo139400.2;Parent=Physo139400;constitutive=1;rank=2 scaffold_73 . CDS 228620 229888 . - 0 ID=Physo139400;Parent=Physo139400;rank=1 scaffold_73 . exon 228620 229888 . - . ID=Physo139400.1;Parent=Physo139400;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 231909 233352 . + . ID=Physo139401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730070;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 231909 233352 . + . ID=Physo139401;Parent=Physo139401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 231909 232898 . + 0 ID=Physo139401;Parent=Physo139401;rank=1 scaffold_73 . exon 231909 232898 . + . ID=Physo139401.1;Parent=Physo139401;constitutive=1;rank=1 scaffold_73 . CDS 232936 233352 . + 0 ID=Physo139401;Parent=Physo139401;rank=2 scaffold_73 . exon 232936 233352 . + . ID=Physo139401.2;Parent=Physo139401;constitutive=1;rank=2 scaffold_73 ensembl protein_coding_gene 233538 235233 . - . ID=Physo139402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730071;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 233538 235233 . - . ID=Physo139402;Parent=Physo139402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 233538 233729 . - 0 ID=Physo139402;Parent=Physo139402;rank=2 scaffold_73 . exon 233538 233729 . - . ID=Physo139402.2;Parent=Physo139402;constitutive=1;rank=2 scaffold_73 . CDS 233926 235233 . - 0 ID=Physo139402;Parent=Physo139402;rank=1 scaffold_73 . exon 233926 235233 . - . ID=Physo139402.1;Parent=Physo139402;constitutive=1;rank=1 scaffold_73 . biological_region 235868 235870 0.999 - . logic_name=eponine scaffold_73 . biological_region 236323 236326 0.999 + . logic_name=eponine scaffold_73 ensembl protein_coding_gene 235636 238134 . + . ID=Physo139403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730072;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 235636 238134 . + . ID=Physo139403;Parent=Physo139403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 235636 237144 . + 0 ID=Physo139403;Parent=Physo139403;rank=1 scaffold_73 . exon 235636 237144 . + . ID=Physo139403.1;Parent=Physo139403;constitutive=1;rank=1 scaffold_73 . CDS 237315 237695 . + 0 ID=Physo139403;Parent=Physo139403;rank=2 scaffold_73 . exon 237315 237695 . + . ID=Physo139403.2;Parent=Physo139403;constitutive=1;rank=2 scaffold_73 . CDS 237982 238134 . + 0 ID=Physo139403;Parent=Physo139403;rank=3 scaffold_73 . exon 237982 238134 . + . ID=Physo139403.3;Parent=Physo139403;constitutive=1;rank=3 scaffold_73 ensembl protein_coding_gene 239165 240608 . + . ID=Physo139404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730073;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 239165 240608 . + . ID=Physo139404;Parent=Physo139404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 239165 240154 . + 0 ID=Physo139404;Parent=Physo139404;rank=1 scaffold_73 . exon 239165 240154 . + . ID=Physo139404.1;Parent=Physo139404;constitutive=1;rank=1 scaffold_73 . CDS 240192 240608 . + 0 ID=Physo139404;Parent=Physo139404;rank=2 scaffold_73 . exon 240192 240608 . + . ID=Physo139404.2;Parent=Physo139404;constitutive=1;rank=2 scaffold_73 ensembl protein_coding_gene 243356 244816 . - . ID=Physo139405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730074;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 243356 244816 . - . ID=Physo139405;Parent=Physo139405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 243356 243539 . - 0 ID=Physo139405;Parent=Physo139405;rank=3 scaffold_73 . exon 243356 243539 . - . ID=Physo139405.3;Parent=Physo139405;constitutive=1;ensembl_phase=2;rank=3 scaffold_73 . CDS 243587 244456 . - 0 ID=Physo139405;Parent=Physo139405;rank=2 scaffold_73 . exon 243587 244456 . - . ID=Physo139405.2;Parent=Physo139405;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_73 . CDS 244557 244816 . - 0 ID=Physo139405;Parent=Physo139405;rank=1 scaffold_73 . exon 244557 244816 . - . ID=Physo139405.1;Parent=Physo139405;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . repeat_region 245931 245941 . ? . description=dust scaffold_73 . repeat_region 247878 247936 . ? . description=dust scaffold_73 . repeat_region 247987 248227 . ? . description=dust scaffold_73 ensembl protein_coding_gene 246416 247552 . + . ID=Physo120228;biotype=protein_coding;external_name=estExt_Genewise1.C_730060;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 246416 247552 . + . ID=Physo120228;Parent=Physo120228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 246416 247552 . + . ID=Physo120228.1;Parent=Physo120228;constitutive=1;ensembl_phase=-1;rank=1 scaffold_73 . CDS 246455 247552 . + 0 ID=Physo120228;Parent=Physo120228;rank=1 scaffold_73 ensembl protein_coding_gene 248409 251778 . - . ID=Physo139407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730076;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 248409 251778 . - . ID=Physo139407;Parent=Physo139407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 248409 248422 . - 0 ID=Physo139407;Parent=Physo139407;rank=11 scaffold_73 . exon 248409 248422 . - . ID=Physo139407.11;Parent=Physo139407;constitutive=1;ensembl_phase=1;rank=11 scaffold_73 . CDS 248577 248694 . - 0 ID=Physo139407;Parent=Physo139407;rank=10 scaffold_73 . exon 248577 248694 . - . ID=Physo139407.10;Parent=Physo139407;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_73 . CDS 248771 248887 . - 0 ID=Physo139407;Parent=Physo139407;rank=9 scaffold_73 . exon 248771 248887 . - . ID=Physo139407.9;Parent=Physo139407;constitutive=1;rank=9 scaffold_73 . CDS 248918 249061 . - 0 ID=Physo139407;Parent=Physo139407;rank=8 scaffold_73 . exon 248918 249061 . - . ID=Physo139407.8;Parent=Physo139407;constitutive=1;rank=8 scaffold_73 . CDS 249128 249307 . - 0 ID=Physo139407;Parent=Physo139407;rank=7 scaffold_73 . exon 249128 249307 . - . ID=Physo139407.7;Parent=Physo139407;constitutive=1;rank=7 scaffold_73 . CDS 249379 249715 . - 0 ID=Physo139407;Parent=Physo139407;rank=6 scaffold_73 . exon 249379 249715 . - . ID=Physo139407.6;Parent=Physo139407;constitutive=1;ensembl_phase=2;rank=6 scaffold_73 . CDS 250122 250145 . - 0 ID=Physo139407;Parent=Physo139407;rank=5 scaffold_73 . exon 250122 250145 . - . ID=Physo139407.5;Parent=Physo139407;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_73 . CDS 250417 250685 . - 0 ID=Physo139407;Parent=Physo139407;rank=4 scaffold_73 . exon 250417 250685 . - . ID=Physo139407.4;Parent=Physo139407;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_73 . CDS 250763 251053 . - 0 ID=Physo139407;Parent=Physo139407;rank=3 scaffold_73 . exon 250763 251053 . - . ID=Physo139407.3;Parent=Physo139407;constitutive=1;rank=3 scaffold_73 . CDS 251215 251355 . - 0 ID=Physo139407;Parent=Physo139407;rank=2 scaffold_73 . exon 251215 251355 . - . ID=Physo139407.2;Parent=Physo139407;constitutive=1;rank=2 scaffold_73 . CDS 251425 251778 . - 0 ID=Physo139407;Parent=Physo139407;rank=1 scaffold_73 . exon 251425 251778 . - . ID=Physo139407.1;Parent=Physo139407;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 252108 254501 . - . ID=Physo139408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730077;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 252108 254501 . - . ID=Physo139408;Parent=Physo139408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 252108 252377 . - 0 ID=Physo139408;Parent=Physo139408;rank=5 scaffold_73 . exon 252108 252377 . - . ID=Physo139408.5;Parent=Physo139408;constitutive=1;rank=5 scaffold_73 . CDS 252454 252744 . - 0 ID=Physo139408;Parent=Physo139408;rank=4 scaffold_73 . exon 252454 252744 . - . ID=Physo139408.4;Parent=Physo139408;constitutive=1;rank=4 scaffold_73 . CDS 252818 252997 . - 0 ID=Physo139408;Parent=Physo139408;rank=3 scaffold_73 . exon 252818 252997 . - . ID=Physo139408.3;Parent=Physo139408;constitutive=1;rank=3 scaffold_73 . CDS 253069 253447 . - 0 ID=Physo139408;Parent=Physo139408;rank=2 scaffold_73 . exon 253069 253447 . - . ID=Physo139408.2;Parent=Physo139408;constitutive=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 253846 254501 . - 0 ID=Physo139408;Parent=Physo139408;rank=1 scaffold_73 . exon 253846 254501 . - . ID=Physo139408.1;Parent=Physo139408;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . biological_region 257509 257510 0.999 - . logic_name=eponine scaffold_73 . repeat_region 260893 260917 . ? . description=trf scaffold_73 ensembl protein_coding_gene 254917 258917 . + . ID=Physo139409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730078;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 254917 258917 . + . ID=Physo139409;Parent=Physo139409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 254917 256195 . + 0 ID=Physo139409;Parent=Physo139409;rank=1 scaffold_73 . exon 254917 256195 . + . ID=Physo139409.1;Parent=Physo139409;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 256241 256288 . + 0 ID=Physo139409;Parent=Physo139409;rank=2 scaffold_73 . exon 256241 256288 . + . ID=Physo139409.2;Parent=Physo139409;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 256354 256922 . + 0 ID=Physo139409;Parent=Physo139409;rank=3 scaffold_73 . exon 256354 256922 . + . ID=Physo139409.3;Parent=Physo139409;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 256993 258645 . + 0 ID=Physo139409;Parent=Physo139409;rank=4 scaffold_73 . exon 256993 258645 . + . ID=Physo139409.4;Parent=Physo139409;constitutive=1;rank=4 scaffold_73 . CDS 258714 258917 . + 0 ID=Physo139409;Parent=Physo139409;rank=5 scaffold_73 . exon 258714 258917 . + . ID=Physo139409.5;Parent=Physo139409;constitutive=1;rank=5 scaffold_73 ensembl protein_coding_gene 260468 261644 . + . ID=Physo139410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730079;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 260468 261644 . + . ID=Physo139410;Parent=Physo139410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 260468 260531 . + 0 ID=Physo139410;Parent=Physo139410;rank=1 scaffold_73 . exon 260468 260531 . + . ID=Physo139410.1;Parent=Physo139410;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 260626 260673 . + 0 ID=Physo139410;Parent=Physo139410;rank=2 scaffold_73 . exon 260626 260673 . + . ID=Physo139410.2;Parent=Physo139410;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 260774 260843 . + 0 ID=Physo139410;Parent=Physo139410;rank=3 scaffold_73 . exon 260774 260843 . + . ID=Physo139410.3;Parent=Physo139410;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_73 . CDS 260927 261032 . + 0 ID=Physo139410;Parent=Physo139410;rank=4 scaffold_73 . exon 260927 261032 . + . ID=Physo139410.4;Parent=Physo139410;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . CDS 261123 261221 . + 0 ID=Physo139410;Parent=Physo139410;rank=5 scaffold_73 . exon 261123 261221 . + . ID=Physo139410.5;Parent=Physo139410;constitutive=1;rank=5 scaffold_73 . CDS 261306 261644 . + 0 ID=Physo139410;Parent=Physo139410;rank=6 scaffold_73 . exon 261306 261644 . + . ID=Physo139410.6;Parent=Physo139410;constitutive=1;rank=6 scaffold_73 . repeat_region 264562 264580 . ? . description=dust scaffold_73 . repeat_region 265517 265524 . ? . description=dust scaffold_73 . repeat_region 267233 267240 . ? . description=dust scaffold_73 . repeat_region 269781 269794 . ? . description=dust scaffold_73 . biological_region 279768 279771 0.999 + . logic_name=eponine scaffold_73 . biological_region 280062 280065 0.999 + . logic_name=eponine scaffold_73 . biological_region 280132 280133 0.999 + . logic_name=eponine scaffold_73 . biological_region 280412 280414 0.999 + . logic_name=eponine scaffold_73 . repeat_region 280731 282725 . + . description=GypsyPi-1c_I-int scaffold_73 . biological_region 281954 281958 0.999 + . logic_name=eponine scaffold_73 . biological_region 282832 282833 0.999 - . logic_name=eponine scaffold_73 ensembl protein_coding_gene 276995 277407 . + . ID=Physo139411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730080;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 276995 277407 . + . ID=Physo139411;Parent=Physo139411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 276995 277289 . + 0 ID=Physo139411;Parent=Physo139411;rank=1 scaffold_73 . exon 276995 277289 . + . ID=Physo139411.1;Parent=Physo139411;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 277340 277407 . + 0 ID=Physo139411;Parent=Physo139411;rank=2 scaffold_73 . exon 277340 277407 . + . ID=Physo139411.2;Parent=Physo139411;constitutive=1;ensembl_phase=1;rank=2 scaffold_73 ensembl protein_coding_gene 279452 282274 . + . ID=Physo139412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730081;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 279452 282274 . + . ID=Physo139412;Parent=Physo139412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 279452 279665 . + 0 ID=Physo139412;Parent=Physo139412;rank=1 scaffold_73 . exon 279452 279665 . + . ID=Physo139412.1;Parent=Physo139412;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . CDS 279713 280048 . + 0 ID=Physo139412;Parent=Physo139412;rank=2 scaffold_73 . exon 279713 280048 . + . ID=Physo139412.2;Parent=Physo139412;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 280145 281154 . + 0 ID=Physo139412;Parent=Physo139412;rank=3 scaffold_73 . exon 280145 281154 . + . ID=Physo139412.3;Parent=Physo139412;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 281204 281488 . + 0 ID=Physo139412;Parent=Physo139412;rank=4 scaffold_73 . exon 281204 281488 . + . ID=Physo139412.4;Parent=Physo139412;constitutive=1;rank=4 scaffold_73 . CDS 281708 282274 . + 0 ID=Physo139412;Parent=Physo139412;rank=5 scaffold_73 . exon 281708 282274 . + . ID=Physo139412.5;Parent=Physo139412;constitutive=1;rank=5 scaffold_73 . repeat_region 285342 285351 . ? . description=dust scaffold_73 . repeat_region 291618 291634 . ? . description=dust scaffold_73 ensembl protein_coding_gene 288840 290427 . - . ID=Physo139413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730082;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 288840 290427 . - . ID=Physo139413;Parent=Physo139413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 288840 288859 . - 0 ID=Physo139413;Parent=Physo139413;rank=3 scaffold_73 . exon 288840 288859 . - . ID=Physo139413.3;Parent=Physo139413;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 289045 289446 . - 0 ID=Physo139413;Parent=Physo139413;rank=2 scaffold_73 . exon 289045 289446 . - . ID=Physo139413.2;Parent=Physo139413;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_73 . CDS 289557 290427 . - 0 ID=Physo139413;Parent=Physo139413;rank=1 scaffold_73 . exon 289557 290427 . - . ID=Physo139413.1;Parent=Physo139413;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_73 . biological_region 302250 302255 0.999 + . logic_name=eponine scaffold_73 ensembl protein_coding_gene 301642 302496 . - . ID=Physo139414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730083;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 301642 302496 . - . ID=Physo139414;Parent=Physo139414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 301642 302496 . - 0 ID=Physo139414;Parent=Physo139414;rank=1 scaffold_73 . exon 301642 302496 . - . ID=Physo139414.1;Parent=Physo139414;constitutive=1;rank=1 scaffold_73 . repeat_region 304745 304753 . ? . description=dust scaffold_73 . repeat_region 308255 308263 . ? . description=dust scaffold_73 . repeat_region 312246 312266 . ? . description=trf scaffold_73 ensembl protein_coding_gene 311232 312101 . - . ID=Physo139415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730084;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 311232 312101 . - . ID=Physo139415;Parent=Physo139415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 311232 312101 . - 0 ID=Physo139415;Parent=Physo139415;rank=1 scaffold_73 . exon 311232 312101 . - . ID=Physo139415.1;Parent=Physo139415;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 312585 314122 . + . ID=Physo139416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730085;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 312585 314122 . + . ID=Physo139416;Parent=Physo139416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 312585 312640 . + 0 ID=Physo139416;Parent=Physo139416;rank=1 scaffold_73 . exon 312585 312640 . + . ID=Physo139416.1;Parent=Physo139416;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 . CDS 312669 313291 . + 0 ID=Physo139416;Parent=Physo139416;rank=2 scaffold_73 . exon 312669 313291 . + . ID=Physo139416.2;Parent=Physo139416;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 313673 313840 . + 0 ID=Physo139416;Parent=Physo139416;rank=3 scaffold_73 . CDS 313911 314122 . + 0 ID=Physo139416;Parent=Physo139416;rank=4 scaffold_73 . biological_region 316903 316904 0.999 + . logic_name=eponine scaffold_73 . biological_region 316937 316941 0.999 - . logic_name=eponine scaffold_73 . biological_region 318045 318049 0.999 + . logic_name=eponine scaffold_73 . biological_region 318086 318087 0.999 - . logic_name=eponine scaffold_73 . exon 313673 313840 . + . ID=Physo139416.3;Parent=Physo139416;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_73 . exon 313911 314122 . + . ID=Physo139416.4;Parent=Physo139416;constitutive=1;ensembl_phase=1;rank=4 scaffold_73 ensembl protein_coding_gene 315129 316400 . - . ID=Physo139417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730086;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 315129 316400 . - . ID=Physo139417;Parent=Physo139417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 315129 315174 . - 0 ID=Physo139417;Parent=Physo139417;rank=4 scaffold_73 . exon 315129 315174 . - . ID=Physo139417.4;Parent=Physo139417;constitutive=1;ensembl_phase=2;rank=4 scaffold_73 . CDS 315303 315342 . - 0 ID=Physo139417;Parent=Physo139417;rank=3 scaffold_73 . exon 315303 315342 . - . ID=Physo139417.3;Parent=Physo139417;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_73 . CDS 315507 316278 . - 0 ID=Physo139417;Parent=Physo139417;rank=2 scaffold_73 . exon 315507 316278 . - . ID=Physo139417.2;Parent=Physo139417;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_73 . CDS 316302 316400 . - 0 ID=Physo139417;Parent=Physo139417;rank=1 scaffold_73 . exon 316302 316400 . - . ID=Physo139417.1;Parent=Physo139417;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 316771 318909 . + . ID=Physo139418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730087;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 316771 318909 . + . ID=Physo139418;Parent=Physo139418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 316771 318909 . + 0 ID=Physo139418;Parent=Physo139418;rank=1 scaffold_73 . exon 316771 318909 . + . ID=Physo139418.1;Parent=Physo139418;constitutive=1;rank=1 scaffold_73 . repeat_region 324512 324519 . ? . description=dust scaffold_73 . repeat_region 329974 329981 . ? . description=dust scaffold_73 . repeat_region 332347 332635 . - . description=Polinton-1_PI scaffold_73 . repeat_region 332813 332977 . - . description=Polinton-1_PI scaffold_73 ensembl protein_coding_gene 325070 326588 . - . ID=Physo139419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730088;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 325070 326588 . - . ID=Physo139419;Parent=Physo139419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 325070 326569 . - 0 ID=Physo139419;Parent=Physo139419;rank=1 scaffold_73 . exon 325070 326588 . - . ID=Physo139419.1;Parent=Physo139419;constitutive=1;ensembl_phase=-1;rank=1 scaffold_73 ensembl protein_coding_gene 327941 329423 . + . ID=Physo139420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730089;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 327941 329423 . + . ID=Physo139420;Parent=Physo139420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 327941 329423 . + . ID=Physo139420.1;Parent=Physo139420;constitutive=1;ensembl_phase=-1;rank=1 scaffold_73 . CDS 327942 329423 . + 0 ID=Physo139420;Parent=Physo139420;rank=1 scaffold_73 ensembl protein_coding_gene 331794 332524 . - . ID=Physo139421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730090;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 331794 332524 . - . ID=Physo139421;Parent=Physo139421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 331794 331852 . - . ID=Physo139421.2;Parent=Physo139421;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_73 . CDS 331847 331852 . - 0 ID=Physo139421;Parent=Physo139421;rank=2 scaffold_73 . CDS 331963 332511 . - 0 ID=Physo139421;Parent=Physo139421;rank=1 scaffold_73 . exon 331963 332524 . - . ID=Physo139421.1;Parent=Physo139421;constitutive=1;ensembl_phase=-1;rank=1 scaffold_73 ensembl protein_coding_gene 334909 335769 . + . ID=Physo139422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730091;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 334909 335769 . + . ID=Physo139422;Parent=Physo139422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 334909 335484 . + 0 ID=Physo139422;Parent=Physo139422;rank=1 scaffold_73 . exon 334909 335484 . + . ID=Physo139422.1;Parent=Physo139422;constitutive=1;rank=1 scaffold_73 . CDS 335764 335769 . + 0 ID=Physo139422;Parent=Physo139422;rank=2 scaffold_73 . exon 335764 335769 . + . ID=Physo139422.2;Parent=Physo139422;constitutive=1;rank=2 scaffold_73 . repeat_region 342009 344173 . - . description=Polinton-1_PI scaffold_73 . repeat_region 344270 344458 . - . description=Polinton-1_PI scaffold_73 . repeat_region 345010 351281 . - . description=Polinton-1_PI scaffold_73 . repeat_region 345054 345085 . ? . description=dust scaffold_73 . repeat_region 345699 345707 . ? . description=dust scaffold_73 . repeat_region 352136 352144 . ? . description=dust scaffold_73 ensembl protein_coding_gene 346906 348396 . - . ID=Physo139423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730092;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 346906 348396 . - . ID=Physo139423;Parent=Physo139423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 346906 346976 . - 0 ID=Physo139423;Parent=Physo139423;rank=3 scaffold_73 . exon 346906 346976 . - . ID=Physo139423.3;Parent=Physo139423;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 347013 348322 . - 0 ID=Physo139423;Parent=Physo139423;rank=2 scaffold_73 . exon 347013 348322 . - . ID=Physo139423.2;Parent=Physo139423;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_73 . CDS 348344 348396 . - 0 ID=Physo139423;Parent=Physo139423;rank=1 scaffold_73 . exon 348344 348396 . - . ID=Physo139423.1;Parent=Physo139423;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_73 ensembl protein_coding_gene 349463 350650 . - . ID=Physo139424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730093;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 349463 350650 . - . ID=Physo139424;Parent=Physo139424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 349463 350650 . - 0 ID=Physo139424;Parent=Physo139424;rank=1 scaffold_73 . exon 349463 350650 . - . ID=Physo139424.1;Parent=Physo139424;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 351216 353634 . - . ID=Physo139425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730094;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 351216 353634 . - . ID=Physo139425;Parent=Physo139425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . exon 351216 351261 . - . ID=Physo139425.5;Parent=Physo139425;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_73 . exon 352168 352443 . - . ID=Physo139425.4;Parent=Physo139425;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_73 . CDS 352228 352443 . - 0 ID=Physo139425;Parent=Physo139425;rank=3 scaffold_73 . CDS 352500 352990 . - 0 ID=Physo139425;Parent=Physo139425;rank=2 scaffold_73 . exon 352500 352990 . - . ID=Physo139425.3;Parent=Physo139425;constitutive=1;ensembl_phase=1;rank=3 scaffold_73 . CDS 353063 353174 . - 0 ID=Physo139425;Parent=Physo139425;rank=1 scaffold_73 . repeat_region 355891 355919 . ? . description=trf scaffold_73 . biological_region 357557 357565 0.999 + . logic_name=eponine scaffold_73 . exon 353063 353291 . - . ID=Physo139425.2;Parent=Physo139425;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_73 . exon 353356 353634 . - . ID=Physo139425.1;Parent=Physo139425;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_73 ensembl protein_coding_gene 357842 358352 . - . ID=Physo139426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730095;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 357842 358352 . - . ID=Physo139426;Parent=Physo139426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 357842 358201 . - 0 ID=Physo139426;Parent=Physo139426;rank=2 scaffold_73 . exon 357842 358201 . - . ID=Physo139426.2;Parent=Physo139426;constitutive=1;rank=2 scaffold_73 . CDS 358344 358352 . - 0 ID=Physo139426;Parent=Physo139426;rank=1 scaffold_73 . exon 358344 358352 . - . ID=Physo139426.1;Parent=Physo139426;constitutive=1;rank=1 scaffold_73 ensembl protein_coding_gene 359755 360870 . + . ID=Physo139427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730096;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 359755 360870 . + . ID=Physo139427;Parent=Physo139427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 359755 359916 . + 0 ID=Physo139427;Parent=Physo139427;rank=1 scaffold_73 . exon 359755 359916 . + . ID=Physo139427.1;Parent=Physo139427;constitutive=1;rank=1 scaffold_73 . CDS 360016 360374 . + 0 ID=Physo139427;Parent=Physo139427;rank=2 scaffold_73 . exon 360016 360374 . + . ID=Physo139427.2;Parent=Physo139427;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_73 . CDS 360465 360870 . + 0 ID=Physo139427;Parent=Physo139427;rank=3 scaffold_73 . exon 360465 360870 . + . ID=Physo139427.3;Parent=Physo139427;constitutive=1;ensembl_phase=2;rank=3 scaffold_73 . repeat_region 363664 363713 . ? . description=dust scaffold_73 . repeat_region 364488 364500 . ? . description=dust scaffold_73 . repeat_region 364754 364771 . ? . description=dust scaffold_73 . repeat_region 364841 364853 . ? . description=dust scaffold_73 . repeat_region 367606 372957 . ? . description=dust scaffold_73 ensembl protein_coding_gene 365536 366651 . + . ID=Physo139428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730097;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 365536 366651 . + . ID=Physo139428;Parent=Physo139428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 365536 365697 . + 0 ID=Physo139428;Parent=Physo139428;rank=1 scaffold_73 . exon 365536 365697 . + . ID=Physo139428.1;Parent=Physo139428;constitutive=1;rank=1 scaffold_73 . CDS 365797 366155 . + 0 ID=Physo139428;Parent=Physo139428;rank=2 scaffold_73 . exon 365797 366155 . + . ID=Physo139428.2;Parent=Physo139428;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_73 . CDS 366246 366651 . + 0 ID=Physo139428;Parent=Physo139428;rank=3 scaffold_73 . exon 366246 366651 . + . ID=Physo139428.3;Parent=Physo139428;constitutive=1;ensembl_phase=2;rank=3 scaffold_73 . repeat_region 377675 378107 . + . description=GypsyPi-1c_I-int scaffold_73 . repeat_region 378110 400826 . ? . description=dust scaffold_73 ensembl protein_coding_gene 400947 401546 . - . ID=Physo139429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_730098;logic_name=jgi_physo1_1 scaffold_73 ensembl transcript 400947 401546 . - . ID=Physo139429;Parent=Physo139429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_73 . CDS 400947 401546 . - 0 ID=Physo139429;Parent=Physo139429;rank=1 scaffold_73 . exon 400947 401546 . - . ID=Physo139429.1;Parent=Physo139429;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_71 1 403071 scaffold_71 . repeat_region 1 1165 . ? . description=trf scaffold_71 . repeat_region 3030 3082 . ? . description=trf scaffold_71 ensembl protein_coding_gene 67 1182 . + . ID=Physo139167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710001;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 67 1182 . + . ID=Physo139167;Parent=Physo139167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . exon 67 162 . + . ID=Physo139167.1;Parent=Physo139167;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_71 . CDS 69 162 . + 0 ID=Physo139167;Parent=Physo139167;rank=1 scaffold_71 . CDS 294 488 . + 0 ID=Physo139167;Parent=Physo139167;rank=2 scaffold_71 . exon 294 488 . + . ID=Physo139167.2;Parent=Physo139167;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 620 814 . + 0 ID=Physo139167;Parent=Physo139167;rank=3 scaffold_71 . exon 620 814 . + . ID=Physo139167.3;Parent=Physo139167;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_71 . CDS 946 1181 . + 0 ID=Physo139167;Parent=Physo139167;rank=4 scaffold_71 . exon 946 1182 . + . ID=Physo139167.4;Parent=Physo139167;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_71 ensembl protein_coding_gene 1382 2594 . + . ID=Physo139168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710002;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 1382 2594 . + . ID=Physo139168;Parent=Physo139168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . exon 1382 1697 . + . ID=Physo139168.1;Parent=Physo139168;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_71 . CDS 1388 1697 . + 0 ID=Physo139168;Parent=Physo139168;rank=1 scaffold_71 . CDS 1848 1937 . + 0 ID=Physo139168;Parent=Physo139168;rank=2 scaffold_71 . exon 1848 1937 . + . ID=Physo139168.2;Parent=Physo139168;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 2031 2291 . + 0 ID=Physo139168;Parent=Physo139168;rank=3 scaffold_71 . exon 2031 2291 . + . ID=Physo139168.3;Parent=Physo139168;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_71 . CDS 2383 2594 . + 0 ID=Physo139168;Parent=Physo139168;rank=4 scaffold_71 . exon 2383 2594 . + . ID=Physo139168.4;Parent=Physo139168;constitutive=1;ensembl_phase=1;rank=4 scaffold_71 ensembl protein_coding_gene 3628 5450 . - . ID=Physo139169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710003;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 3628 5450 . - . ID=Physo139169;Parent=Physo139169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 3628 5072 . - 0 ID=Physo139169;Parent=Physo139169;rank=2 scaffold_71 . exon 3628 5072 . - . ID=Physo139169.2;Parent=Physo139169;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 5147 5450 . - 0 ID=Physo139169;Parent=Physo139169;rank=1 scaffold_71 . exon 5147 5450 . - . ID=Physo139169.1;Parent=Physo139169;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . repeat_region 15324 15514 . - . description=Sola3-2_PS scaffold_71 . biological_region 16061 16063 0.999 - . logic_name=eponine scaffold_71 . biological_region 16235 16236 0.999 + . logic_name=eponine scaffold_71 . biological_region 16574 16576 0.999 - . logic_name=eponine scaffold_71 . repeat_region 17282 17289 . ? . description=dust scaffold_71 . biological_region 17775 17777 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 14726 16398 . - . ID=Physo139170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710004;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 14726 16398 . - . ID=Physo139170;Parent=Physo139170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 14726 15008 . - 0 ID=Physo139170;Parent=Physo139170;rank=3 scaffold_71 . exon 14726 15008 . - . ID=Physo139170.3;Parent=Physo139170;constitutive=1;ensembl_phase=2;rank=3 scaffold_71 . CDS 15070 16257 . - 0 ID=Physo139170;Parent=Physo139170;rank=2 scaffold_71 . exon 15070 16257 . - . ID=Physo139170.2;Parent=Physo139170;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_71 . CDS 16301 16398 . - 0 ID=Physo139170;Parent=Physo139170;rank=1 scaffold_71 . exon 16301 16398 . - . ID=Physo139170.1;Parent=Physo139170;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 ensembl protein_coding_gene 19221 19949 . - . ID=Physo139171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710005;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 19221 19949 . - . ID=Physo139171;Parent=Physo139171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 19221 19538 . - 0 ID=Physo139171;Parent=Physo139171;rank=3 scaffold_71 . exon 19221 19538 . - . ID=Physo139171.3;Parent=Physo139171;constitutive=1;rank=3 scaffold_71 . CDS 19566 19865 . - 0 ID=Physo139171;Parent=Physo139171;rank=2 scaffold_71 . exon 19566 19865 . - . ID=Physo139171.2;Parent=Physo139171;constitutive=1;rank=2 scaffold_71 . CDS 19893 19949 . - 0 ID=Physo139171;Parent=Physo139171;rank=1 scaffold_71 . repeat_region 19193 19999 . ? . description=trf scaffold_71 . repeat_region 21216 21250 . ? . description=trf scaffold_71 . repeat_region 21784 22129 . - . description=GypsyPi-1c_I-int scaffold_71 . repeat_region 22692 22826 . ? . description=trf scaffold_71 . repeat_region 28402 28494 . ? . description=trf scaffold_71 . repeat_region 29205 29240 . ? . description=trf scaffold_71 . exon 19893 19949 . - . ID=Physo139171.1;Parent=Physo139171;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 21775 24255 . - . ID=Physo139172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710006;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 21775 24255 . - . ID=Physo139172;Parent=Physo139172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 21775 21873 . - 0 ID=Physo139172;Parent=Physo139172;rank=6 scaffold_71 . exon 21775 21873 . - . ID=Physo139172.6;Parent=Physo139172;constitutive=1;rank=6 scaffold_71 . CDS 21906 22031 . - 0 ID=Physo139172;Parent=Physo139172;rank=5 scaffold_71 . exon 21906 22031 . - . ID=Physo139172.5;Parent=Physo139172;constitutive=1;rank=5 scaffold_71 . CDS 22065 22287 . - 0 ID=Physo139172;Parent=Physo139172;rank=4 scaffold_71 . exon 22065 22287 . - . ID=Physo139172.4;Parent=Physo139172;constitutive=1;ensembl_phase=2;rank=4 scaffold_71 . CDS 22341 22846 . - 0 ID=Physo139172;Parent=Physo139172;rank=3 scaffold_71 . exon 22341 22846 . - . ID=Physo139172.3;Parent=Physo139172;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_71 . CDS 23018 23147 . - 0 ID=Physo139172;Parent=Physo139172;rank=2 scaffold_71 . exon 23018 23147 . - . ID=Physo139172.2;Parent=Physo139172;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 23465 24255 . - 0 ID=Physo139172;Parent=Physo139172;rank=1 scaffold_71 . exon 23465 24255 . - . ID=Physo139172.1;Parent=Physo139172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 . repeat_region 29897 29904 . ? . description=dust scaffold_71 . repeat_region 32907 32940 . ? . description=dust scaffold_71 . biological_region 36523 36525 0.999 + . logic_name=eponine scaffold_71 . biological_region 36785 36787 0.999 + . logic_name=eponine scaffold_71 . biological_region 37153 37155 0.999 + . logic_name=eponine scaffold_71 . biological_region 37168 37169 0.999 + . logic_name=eponine scaffold_71 . biological_region 37217 37224 0.999 - . logic_name=eponine scaffold_71 . repeat_region 37473 37480 . ? . description=dust scaffold_71 . biological_region 37628 37628 0.999 - . logic_name=eponine scaffold_71 . repeat_region 37643 37652 . ? . description=dust scaffold_71 . biological_region 39264 39271 0.999 + . logic_name=eponine scaffold_71 . biological_region 39271 39278 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 30020 31257 . + . ID=Physo139173;biotype=protein_coding;description=PsAvh270 [Source:UniProtKB/TrEMBL%3BAcc:E0W5D4];external_name=estExt_fgenesh1_pg.C_710007;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 30020 31257 . + . ID=Physo139173;Parent=Physo139173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 30020 30044 . + 0 ID=Physo139173;Parent=Physo139173;rank=1 scaffold_71 . exon 30020 30044 . + . ID=Physo139173.1;Parent=Physo139173;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . CDS 30510 31175 . + 0 ID=Physo139173;Parent=Physo139173;rank=2 scaffold_71 . exon 30510 31175 . + . ID=Physo139173.2;Parent=Physo139173;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 31201 31205 . + 0 ID=Physo139173;Parent=Physo139173;rank=3 scaffold_71 . exon 31201 31257 . + . ID=Physo139173.3;Parent=Physo139173;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_71 ensembl protein_coding_gene 35458 37280 . - . ID=Physo139174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710008;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 35458 37280 . - . ID=Physo139174;Parent=Physo139174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 35458 35488 . - 0 ID=Physo139174;Parent=Physo139174;rank=6 scaffold_71 . exon 35458 35488 . - . ID=Physo139174.6;Parent=Physo139174;constitutive=1;ensembl_phase=2;rank=6 scaffold_71 . CDS 35540 35884 . - 0 ID=Physo139174;Parent=Physo139174;rank=5 scaffold_71 . exon 35540 35884 . - . ID=Physo139174.5;Parent=Physo139174;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_71 . CDS 35962 36068 . - 0 ID=Physo139174;Parent=Physo139174;rank=4 scaffold_71 . exon 35962 36068 . - . ID=Physo139174.4;Parent=Physo139174;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_71 . CDS 36132 36254 . - 0 ID=Physo139174;Parent=Physo139174;rank=3 scaffold_71 . exon 36132 36254 . - . ID=Physo139174.3;Parent=Physo139174;constitutive=1;rank=3 scaffold_71 . CDS 36331 36877 . - 0 ID=Physo139174;Parent=Physo139174;rank=2 scaffold_71 . exon 36331 36877 . - . ID=Physo139174.2;Parent=Physo139174;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 36955 37280 . - 0 ID=Physo139174;Parent=Physo139174;rank=1 scaffold_71 . exon 36955 37280 . - . ID=Physo139174.1;Parent=Physo139174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 ensembl protein_coding_gene 39178 39877 . + . ID=Physo139175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710009;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 39178 39877 . + . ID=Physo139175;Parent=Physo139175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 39178 39611 . + 0 ID=Physo139175;Parent=Physo139175;rank=1 scaffold_71 . exon 39178 39611 . + . ID=Physo139175.1;Parent=Physo139175;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 . CDS 39688 39877 . + 0 ID=Physo139175;Parent=Physo139175;rank=2 scaffold_71 . exon 39688 39877 . + . ID=Physo139175.2;Parent=Physo139175;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 ensembl protein_coding_gene 39898 41296 . - . ID=Physo139176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710010;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 39898 41296 . - . ID=Physo139176;Parent=Physo139176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . exon 39898 41211 . - . ID=Physo139176.2;Parent=Physo139176;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_71 . CDS 39999 41211 . - 0 ID=Physo139176;Parent=Physo139176;rank=2 scaffold_71 . CDS 41262 41296 . - 0 ID=Physo139176;Parent=Physo139176;rank=1 scaffold_71 . exon 41262 41296 . - . ID=Physo139176.1;Parent=Physo139176;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 ensembl protein_coding_gene 44848 45687 . + . ID=Physo139177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710011;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 44848 45687 . + . ID=Physo139177;Parent=Physo139177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 44848 45687 . + 0 ID=Physo139177;Parent=Physo139177;rank=1 scaffold_71 . exon 44848 45687 . + . ID=Physo139177.1;Parent=Physo139177;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 48391 48900 . - . ID=Physo139178;biotype=protein_coding;description=PsAvh271 [Source:UniProtKB/TrEMBL%3BAcc:E0W5D6];external_name=estExt_fgenesh1_pg.C_710012;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 48391 48900 . - . ID=Physo139178;Parent=Physo139178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 48391 48900 . - 0 ID=Physo139178;Parent=Physo139178;rank=1 scaffold_71 . exon 48391 48900 . - . ID=Physo139178.1;Parent=Physo139178;constitutive=1;rank=1 scaffold_71 . repeat_region 51526 51533 . ? . description=dust scaffold_71 . repeat_region 53051 53060 . ? . description=dust scaffold_71 . repeat_region 53913 53920 . ? . description=dust scaffold_71 . repeat_region 55353 55403 . ? . description=trf scaffold_71 . repeat_region 55393 55523 . ? . description=trf scaffold_71 . repeat_region 56958 56966 . ? . description=dust scaffold_71 . repeat_region 57635 57676 . ? . description=dust scaffold_71 . biological_region 58670 58675 0.999 - . logic_name=eponine scaffold_71 . biological_region 58885 58887 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 49832 50938 . + . ID=Physo139179;biotype=protein_coding;description=PsAvh151 [Source:UniProtKB/TrEMBL%3BAcc:E0W5D7];external_name=estExt_fgenesh1_pg.C_710013;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 49832 50938 . + . ID=Physo139179;Parent=Physo139179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 49832 50938 . + 0 ID=Physo139179;Parent=Physo139179;rank=1 scaffold_71 . exon 49832 50938 . + . ID=Physo139179.1;Parent=Physo139179;constitutive=1;rank=1 scaffold_71 . repeat_region 60698 63245 . + . description=Gypsy-2-I_PI-int scaffold_71 . repeat_region 63767 63979 . + . description=Gypsy-2-I_PI-int scaffold_71 . repeat_region 64058 64171 . + . description=Gypsy-1-LTR_PI scaffold_71 ensembl protein_coding_gene 61212 61601 . + . ID=Physo120062;biotype=protein_coding;external_name=estExt_Genewise1.C_710024;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 61212 61601 . + . ID=Physo120062;Parent=Physo120062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . exon 61212 61601 . + . ID=Physo120062.1;Parent=Physo120062;constitutive=1;ensembl_phase=-1;rank=1 scaffold_71 . CDS 61218 61601 . + 0 ID=Physo120062;Parent=Physo120062;rank=1 scaffold_71 ensembl protein_coding_gene 62472 63761 . - . ID=Physo139181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710015;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 62472 63761 . - . ID=Physo139181;Parent=Physo139181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 62472 63080 . - 0 ID=Physo139181;Parent=Physo139181;rank=2 scaffold_71 . exon 62472 63080 . - . ID=Physo139181.2;Parent=Physo139181;constitutive=1;rank=2 scaffold_71 . CDS 63102 63761 . - 0 ID=Physo139181;Parent=Physo139181;rank=1 scaffold_71 . exon 63102 63761 . - . ID=Physo139181.1;Parent=Physo139181;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 64189 65580 . + . ID=Physo139182;biotype=protein_coding;description=PsAvh199 [Source:UniProtKB/TrEMBL%3BAcc:E0W5D9];external_name=estExt_fgenesh1_pg.C_710016;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 64189 65580 . + . ID=Physo139182;Parent=Physo139182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 64189 65580 . + 0 ID=Physo139182;Parent=Physo139182;rank=1 scaffold_71 . exon 64189 65580 . + . ID=Physo139182.1;Parent=Physo139182;constitutive=1;rank=1 scaffold_71 . repeat_region 70207 70214 . ? . description=dust scaffold_71 . biological_region 70832 70832 0.999 + . logic_name=eponine scaffold_71 . repeat_region 71790 71835 . ? . description=trf scaffold_71 . repeat_region 72079 72391 . - . description=GypsyPi-1c_LTR scaffold_71 . repeat_region 73823 73900 . - . description=GypsyPi-1c_I-int scaffold_71 . repeat_region 74762 76870 . - . description=GypsyPi-1c_I-int scaffold_71 . repeat_region 75441 75466 . ? . description=trf scaffold_71 . repeat_region 76872 77184 . - . description=GypsyPi-1c_LTR scaffold_71 ensembl protein_coding_gene 75828 76783 . - . ID=Physo139184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710018;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 75828 76783 . - . ID=Physo139184;Parent=Physo139184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 75828 76273 . - 0 ID=Physo139184;Parent=Physo139184;rank=3 scaffold_71 . exon 75828 76273 . - . ID=Physo139184.3;Parent=Physo139184;constitutive=1;ensembl_phase=1;rank=3 scaffold_71 . CDS 76529 76744 . - 0 ID=Physo139184;Parent=Physo139184;rank=2 scaffold_71 . exon 76529 76744 . - . ID=Physo139184.2;Parent=Physo139184;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 76774 76783 . - 0 ID=Physo139184;Parent=Physo139184;rank=1 scaffold_71 . exon 76774 76783 . - . ID=Physo139184.1;Parent=Physo139184;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 ensembl protein_coding_gene 70434 70943 . - . ID=Physo157956;biotype=protein_coding;external_name=C_scaffold_71000001;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 70434 70943 . - . ID=Physo157956;Parent=Physo157956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 70434 70943 . - 0 ID=Physo157956;Parent=Physo157956;rank=1 scaffold_71 . exon 70434 70943 . - . ID=Physo157956.1;Parent=Physo157956;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 79167 81919 . + . ID=Physo139185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710019;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 79167 81919 . + . ID=Physo139185;Parent=Physo139185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 79167 79571 . + 0 ID=Physo139185;Parent=Physo139185;rank=1 scaffold_71 . exon 79167 79571 . + . ID=Physo139185.1;Parent=Physo139185;constitutive=1;rank=1 scaffold_71 . CDS 79622 81919 . + 0 ID=Physo139185;Parent=Physo139185;rank=2 scaffold_71 . exon 79622 81919 . + . ID=Physo139185.2;Parent=Physo139185;constitutive=1;rank=2 scaffold_71 ensembl protein_coding_gene 84832 91407 . - . ID=Physo139186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710020;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 84832 91407 . - . ID=Physo139186;Parent=Physo139186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 84832 85095 . - 0 ID=Physo139186;Parent=Physo139186;rank=11 scaffold_71 . exon 84832 85095 . - . ID=Physo139186.11;Parent=Physo139186;constitutive=1;rank=11 scaffold_71 . CDS 85596 86601 . - 0 ID=Physo139186;Parent=Physo139186;rank=10 scaffold_71 . exon 85596 86601 . - . ID=Physo139186.10;Parent=Physo139186;constitutive=1;ensembl_phase=2;rank=10 scaffold_71 . CDS 86635 86894 . - 0 ID=Physo139186;Parent=Physo139186;rank=9 scaffold_71 . exon 86635 86894 . - . ID=Physo139186.9;Parent=Physo139186;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_71 . CDS 86916 87541 . - 0 ID=Physo139186;Parent=Physo139186;rank=8 scaffold_71 . exon 86916 87541 . - . ID=Physo139186.8;Parent=Physo139186;constitutive=1;ensembl_phase=1;rank=8 scaffold_71 . CDS 87562 87731 . - 0 ID=Physo139186;Parent=Physo139186;rank=7 scaffold_71 . exon 87562 87731 . - . ID=Physo139186.7;Parent=Physo139186;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_71 . CDS 87996 88984 . - 0 ID=Physo139186;Parent=Physo139186;rank=6 scaffold_71 . exon 87996 88984 . - . ID=Physo139186.6;Parent=Physo139186;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_71 . CDS 89056 90036 . - 0 ID=Physo139186;Parent=Physo139186;rank=5 scaffold_71 . CDS 90071 90123 . - 0 ID=Physo139186;Parent=Physo139186;rank=4 scaffold_71 . CDS 90177 90593 . - 0 ID=Physo139186;Parent=Physo139186;rank=3 scaffold_71 . CDS 90700 91000 . - 0 ID=Physo139186;Parent=Physo139186;rank=2 scaffold_71 . CDS 91063 91407 . - 0 ID=Physo139186;Parent=Physo139186;rank=1 scaffold_71 . biological_region 89580 89589 0.999 + . logic_name=eponine scaffold_71 . repeat_region 89599 89693 . ? . description=trf scaffold_71 . biological_region 89639 89640 0.999 + . logic_name=eponine scaffold_71 . biological_region 90298 90299 0.999 + . logic_name=eponine scaffold_71 . biological_region 90424 90425 0.999 + . logic_name=eponine scaffold_71 . repeat_region 91407 91431 . ? . description=trf scaffold_71 . repeat_region 91407 91438 . ? . description=dust scaffold_71 . repeat_region 91407 91438 . ? . description=trf scaffold_71 . repeat_region 91593 91642 . ? . description=dust scaffold_71 . repeat_region 93886 101710 . ? . description=dust scaffold_71 . exon 89056 90036 . - . ID=Physo139186.5;Parent=Physo139186;constitutive=1;rank=5 scaffold_71 . exon 90071 90123 . - . ID=Physo139186.4;Parent=Physo139186;constitutive=1;ensembl_phase=1;rank=4 scaffold_71 . exon 90177 90593 . - . ID=Physo139186.3;Parent=Physo139186;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_71 . exon 90700 91000 . - . ID=Physo139186.2;Parent=Physo139186;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_71 . exon 91063 91407 . - . ID=Physo139186.1;Parent=Physo139186;constitutive=1;rank=1 scaffold_71 . repeat_region 108502 108530 . ? . description=trf scaffold_71 . repeat_region 108660 108671 . ? . description=dust scaffold_71 . repeat_region 110989 110999 . ? . description=dust scaffold_71 . biological_region 117776 117777 0.999 - . logic_name=eponine scaffold_71 . biological_region 117831 117837 0.999 + . logic_name=eponine scaffold_71 ensembl protein_coding_gene 112427 113935 . - . ID=Physo139187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710021;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 112427 113935 . - . ID=Physo139187;Parent=Physo139187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 112427 113935 . - 0 ID=Physo139187;Parent=Physo139187;rank=1 scaffold_71 . exon 112427 113935 . - . ID=Physo139187.1;Parent=Physo139187;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 115575 116186 . - . ID=Physo139188;biotype=protein_coding;description=PsAvh234 [Source:UniProtKB/TrEMBL%3BAcc:E0W5E0];external_name=estExt_fgenesh1_pg.C_710022;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 115575 116186 . - . ID=Physo139188;Parent=Physo139188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 115575 115805 . - 0 ID=Physo139188;Parent=Physo139188;rank=2 scaffold_71 . exon 115575 115805 . - . ID=Physo139188.2;Parent=Physo139188;constitutive=1;rank=2 scaffold_71 . CDS 115884 116186 . - 0 ID=Physo139188;Parent=Physo139188;rank=1 scaffold_71 . exon 115884 116186 . - . ID=Physo139188.1;Parent=Physo139188;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 125756 126259 . + . ID=Physo139189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710023;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 125756 126259 . + . ID=Physo139189;Parent=Physo139189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 125756 126259 . + 0 ID=Physo139189;Parent=Physo139189;rank=1 scaffold_71 . exon 125756 126259 . + . ID=Physo139189.1;Parent=Physo139189;constitutive=1;rank=1 scaffold_71 . biological_region 132749 132752 0.999 + . logic_name=eponine scaffold_71 . biological_region 133268 133270 0.999 - . logic_name=eponine scaffold_71 . repeat_region 133456 133484 . ? . description=trf scaffold_71 . repeat_region 133456 133488 . ? . description=dust scaffold_71 . biological_region 133964 133968 0.999 - . logic_name=eponine scaffold_71 . repeat_region 136940 136985 . ? . description=trf scaffold_71 . biological_region 137077 137078 0.999 + . logic_name=eponine scaffold_71 . biological_region 137146 137147 0.999 + . logic_name=eponine scaffold_71 . biological_region 137247 137251 0.999 + . logic_name=eponine scaffold_71 ensembl protein_coding_gene 136382 139253 . + . ID=Physo139190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710024;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 136382 139253 . + . ID=Physo139190;Parent=Physo139190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 136382 136925 . + 0 ID=Physo139190;Parent=Physo139190;rank=1 scaffold_71 . exon 136382 136925 . + . ID=Physo139190.1;Parent=Physo139190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . CDS 137159 138652 . + 0 ID=Physo139190;Parent=Physo139190;rank=2 scaffold_71 . exon 137159 138652 . + . ID=Physo139190.2;Parent=Physo139190;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 138676 138740 . + 0 ID=Physo139190;Parent=Physo139190;rank=3 scaffold_71 . CDS 138834 139253 . + 0 ID=Physo139190;Parent=Physo139190;rank=4 scaffold_71 . repeat_region 137745 140102 . + . description=GypsyPi-1c_I-int scaffold_71 . exon 138676 138740 . + . ID=Physo139190.3;Parent=Physo139190;constitutive=1;ensembl_phase=1;rank=3 scaffold_71 . exon 138834 139253 . + . ID=Physo139190.4;Parent=Physo139190;constitutive=1;rank=4 scaffold_71 ensembl protein_coding_gene 140639 142175 . - . ID=Physo139191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710025;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 140639 142175 . - . ID=Physo139191;Parent=Physo139191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 140639 141126 . - 0 ID=Physo139191;Parent=Physo139191;rank=2 scaffold_71 . exon 140639 141126 . - . ID=Physo139191.2;Parent=Physo139191;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 141167 142175 . - 0 ID=Physo139191;Parent=Physo139191;rank=1 scaffold_71 . exon 141167 142175 . - . ID=Physo139191.1;Parent=Physo139191;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . biological_region 152877 152878 0.999 - . logic_name=eponine scaffold_71 . repeat_region 153162 153181 . ? . description=trf scaffold_71 . biological_region 154262 154267 0.999 - . logic_name=eponine scaffold_71 . biological_region 154319 154323 0.999 - . logic_name=eponine scaffold_71 . repeat_region 154495 154524 . ? . description=trf scaffold_71 . repeat_region 156073 156163 . ? . description=trf scaffold_71 ensembl protein_coding_gene 148962 149456 . + . ID=Physo139192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710026;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 148962 149456 . + . ID=Physo139192;Parent=Physo139192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 148962 149262 . + 0 ID=Physo139192;Parent=Physo139192;rank=1 scaffold_71 . exon 148962 149262 . + . ID=Physo139192.1;Parent=Physo139192;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . CDS 149365 149456 . + 0 ID=Physo139192;Parent=Physo139192;rank=2 scaffold_71 . exon 149365 149456 . + . ID=Physo139192.2;Parent=Physo139192;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 ensembl protein_coding_gene 149519 150826 . - . ID=Physo139193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710027;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 149519 150826 . - . ID=Physo139193;Parent=Physo139193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 149519 150826 . - 0 ID=Physo139193;Parent=Physo139193;rank=1 scaffold_71 . exon 149519 150826 . - . ID=Physo139193.1;Parent=Physo139193;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 151938 153182 . - . ID=Physo139194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710028;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 151938 153182 . - . ID=Physo139194;Parent=Physo139194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 151938 153182 . - 0 ID=Physo139194;Parent=Physo139194;rank=1 scaffold_71 . exon 151938 153182 . - . ID=Physo139194.1;Parent=Physo139194;constitutive=1;rank=1 scaffold_71 . repeat_region 159738 159747 . ? . description=dust scaffold_71 . repeat_region 166529 166537 . ? . description=dust scaffold_71 ensembl protein_coding_gene 157526 158645 . - . ID=Physo139195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710029;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 157526 158645 . - . ID=Physo139195;Parent=Physo139195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . exon 157526 158097 . - . ID=Physo139195.3;Parent=Physo139195;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_71 . CDS 157780 158097 . - 0 ID=Physo139195;Parent=Physo139195;rank=3 scaffold_71 . CDS 158132 158511 . - 0 ID=Physo139195;Parent=Physo139195;rank=2 scaffold_71 . exon 158132 158511 . - . ID=Physo139195.2;Parent=Physo139195;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 158565 158595 . - 0 ID=Physo139195;Parent=Physo139195;rank=1 scaffold_71 . exon 158565 158645 . - . ID=Physo139195.1;Parent=Physo139195;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_71 ensembl protein_coding_gene 159658 161476 . + . ID=Physo139196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710030;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 159658 161476 . + . ID=Physo139196;Parent=Physo139196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . exon 159658 161476 . + . ID=Physo139196.1;Parent=Physo139196;constitutive=1;ensembl_phase=-1;rank=1 scaffold_71 . CDS 159761 161476 . + 0 ID=Physo139196;Parent=Physo139196;rank=1 scaffold_71 ensembl protein_coding_gene 161970 163419 . + . ID=Physo139197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710031;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 161970 163419 . + . ID=Physo139197;Parent=Physo139197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 161970 162528 . + 0 ID=Physo139197;Parent=Physo139197;rank=1 scaffold_71 . exon 161970 162528 . + . ID=Physo139197.1;Parent=Physo139197;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . CDS 162585 162719 . + 0 ID=Physo139197;Parent=Physo139197;rank=2 scaffold_71 . exon 162585 162719 . + . ID=Physo139197.2;Parent=Physo139197;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 162777 163296 . + 0 ID=Physo139197;Parent=Physo139197;rank=3 scaffold_71 . exon 162777 163296 . + . ID=Physo139197.3;Parent=Physo139197;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_71 . CDS 163380 163419 . + 0 ID=Physo139197;Parent=Physo139197;rank=4 scaffold_71 . exon 163380 163419 . + . ID=Physo139197.4;Parent=Physo139197;constitutive=1;ensembl_phase=2;rank=4 scaffold_71 . biological_region 167271 167276 0.999 + . logic_name=eponine scaffold_71 . biological_region 167358 167362 0.999 - . logic_name=eponine scaffold_71 . biological_region 167440 167447 0.999 - . logic_name=eponine scaffold_71 . biological_region 173792 173794 0.999 + . logic_name=eponine scaffold_71 . biological_region 174634 174636 0.999 - . logic_name=eponine scaffold_71 . biological_region 174672 174674 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 167228 173968 . - . ID=Physo139198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710032;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 167228 173968 . - . ID=Physo139198;Parent=Physo139198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 167228 173968 . - 0 ID=Physo139198;Parent=Physo139198;rank=1 scaffold_71 . exon 167228 173968 . - . ID=Physo139198.1;Parent=Physo139198;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 176488 176878 . - . ID=Physo139199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710033;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 176488 176878 . - . ID=Physo139199;Parent=Physo139199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 176488 176848 . - 0 ID=Physo139199;Parent=Physo139199;rank=2 scaffold_71 . exon 176488 176848 . - . ID=Physo139199.2;Parent=Physo139199;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 176868 176878 . - 0 ID=Physo139199;Parent=Physo139199;rank=1 scaffold_71 . exon 176868 176878 . - . ID=Physo139199.1;Parent=Physo139199;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 . repeat_region 178498 178811 . - . description=GypsyPi-1c_LTR scaffold_71 . repeat_region 181499 181541 . ? . description=dust scaffold_71 . repeat_region 186014 186096 . ? . description=trf scaffold_71 ensembl protein_coding_gene 179634 180439 . - . ID=Physo139200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710034;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 179634 180439 . - . ID=Physo139200;Parent=Physo139200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 179634 179809 . - 0 ID=Physo139200;Parent=Physo139200;rank=2 scaffold_71 . exon 179634 179809 . - . ID=Physo139200.2;Parent=Physo139200;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 179842 180439 . - 0 ID=Physo139200;Parent=Physo139200;rank=1 scaffold_71 . exon 179842 180439 . - . ID=Physo139200.1;Parent=Physo139200;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . biological_region 189292 189296 0.999 + . logic_name=eponine scaffold_71 . biological_region 194276 194289 0.999 + . logic_name=eponine scaffold_71 . biological_region 194302 194305 0.999 + . logic_name=eponine scaffold_71 . biological_region 194348 194352 0.999 - . logic_name=eponine scaffold_71 . biological_region 194385 194388 0.999 - . logic_name=eponine scaffold_71 . biological_region 194428 194429 0.999 + . logic_name=eponine scaffold_71 . biological_region 195665 195670 0.999 + . logic_name=eponine scaffold_71 ensembl protein_coding_gene 192092 193405 . - . ID=Physo139201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710035;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 192092 193405 . - . ID=Physo139201;Parent=Physo139201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 192092 193405 . - 0 ID=Physo139201;Parent=Physo139201;rank=1 scaffold_71 . exon 192092 193405 . - . ID=Physo139201.1;Parent=Physo139201;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 194275 198603 . + . ID=Physo139202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710036;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 194275 198603 . + . ID=Physo139202;Parent=Physo139202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 194275 198603 . + 0 ID=Physo139202;Parent=Physo139202;rank=1 scaffold_71 . exon 194275 198603 . + . ID=Physo139202.1;Parent=Physo139202;constitutive=1;rank=1 scaffold_71 . repeat_region 199152 199161 . ? . description=dust scaffold_71 . repeat_region 199704 199711 . ? . description=dust scaffold_71 . repeat_region 200875 200885 . ? . description=dust scaffold_71 . repeat_region 201331 201339 . ? . description=dust scaffold_71 . repeat_region 204058 204074 . ? . description=dust scaffold_71 ensembl protein_coding_gene 201732 202457 . - . ID=Physo139203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710037;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 201732 202457 . - . ID=Physo139203;Parent=Physo139203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 201732 201829 . - 0 ID=Physo139203;Parent=Physo139203;rank=3 scaffold_71 . exon 201732 201829 . - . ID=Physo139203.3;Parent=Physo139203;constitutive=1;ensembl_phase=1;rank=3 scaffold_71 . CDS 201874 202227 . - 0 ID=Physo139203;Parent=Physo139203;rank=2 scaffold_71 . exon 201874 202227 . - . ID=Physo139203.2;Parent=Physo139203;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 202271 202457 . - 0 ID=Physo139203;Parent=Physo139203;rank=1 scaffold_71 . exon 202271 202457 . - . ID=Physo139203.1;Parent=Physo139203;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 ensembl protein_coding_gene 202938 204206 . + . ID=Physo139204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710038;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 202938 204206 . + . ID=Physo139204;Parent=Physo139204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 202938 202953 . + 0 ID=Physo139204;Parent=Physo139204;rank=1 scaffold_71 . exon 202938 202953 . + . ID=Physo139204.1;Parent=Physo139204;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . CDS 203056 203266 . + 0 ID=Physo139204;Parent=Physo139204;rank=2 scaffold_71 . exon 203056 203266 . + . ID=Physo139204.2;Parent=Physo139204;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_71 . CDS 203357 204026 . + 0 ID=Physo139204;Parent=Physo139204;rank=3 scaffold_71 . exon 203357 204026 . + . ID=Physo139204.3;Parent=Physo139204;constitutive=1;ensembl_phase=2;rank=3 scaffold_71 . CDS 204105 204206 . + 0 ID=Physo139204;Parent=Physo139204;rank=4 scaffold_71 . exon 204105 204206 . + . ID=Physo139204.4;Parent=Physo139204;constitutive=1;rank=4 scaffold_71 . biological_region 207543 207546 0.999 + . logic_name=eponine scaffold_71 . biological_region 207711 207712 0.999 + . logic_name=eponine scaffold_71 . repeat_region 211627 211676 . ? . description=trf scaffold_71 ensembl protein_coding_gene 214484 215854 . - . ID=Physo139205;biotype=protein_coding;description=PsAvh147 [Source:UniProtKB/TrEMBL%3BAcc:E0W5E1];external_name=estExt_fgenesh1_pg.C_710039;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 214484 215854 . - . ID=Physo139205;Parent=Physo139205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 214484 215854 . - 0 ID=Physo139205;Parent=Physo139205;rank=1 scaffold_71 . exon 214484 215854 . - . ID=Physo139205.1;Parent=Physo139205;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 217362 218225 . - . ID=Physo139206;biotype=protein_coding;description=PsAvh154 [Source:UniProtKB/TrEMBL%3BAcc:E0W5E2];external_name=estExt_fgenesh1_pg.C_710040;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 217362 218225 . - . ID=Physo139206;Parent=Physo139206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 217362 218225 . - 0 ID=Physo139206;Parent=Physo139206;rank=1 scaffold_71 . exon 217362 218225 . - . ID=Physo139206.1;Parent=Physo139206;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 225201 229902 . - . ID=Physo139207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710041;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 225201 229902 . - . ID=Physo139207;Parent=Physo139207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 225201 225377 . - 0 ID=Physo139207;Parent=Physo139207;rank=9 scaffold_71 . exon 225201 225377 . - . ID=Physo139207.9;Parent=Physo139207;constitutive=1;rank=9 scaffold_71 . CDS 225425 225973 . - 0 ID=Physo139207;Parent=Physo139207;rank=8 scaffold_71 . exon 225425 225973 . - . ID=Physo139207.8;Parent=Physo139207;constitutive=1;rank=8 scaffold_71 . CDS 225997 226809 . - 0 ID=Physo139207;Parent=Physo139207;rank=7 scaffold_71 . exon 225997 226809 . - . ID=Physo139207.7;Parent=Physo139207;constitutive=1;rank=7 scaffold_71 . CDS 227162 227271 . - 0 ID=Physo139207;Parent=Physo139207;rank=6 scaffold_71 . CDS 227864 228091 . - 0 ID=Physo139207;Parent=Physo139207;rank=5 scaffold_71 . CDS 228136 228455 . - 0 ID=Physo139207;Parent=Physo139207;rank=4 scaffold_71 . CDS 228519 229180 . - 0 ID=Physo139207;Parent=Physo139207;rank=3 scaffold_71 . CDS 229210 229745 . - 0 ID=Physo139207;Parent=Physo139207;rank=2 scaffold_71 . CDS 229836 229902 . - 0 ID=Physo139207;Parent=Physo139207;rank=1 scaffold_71 . repeat_region 226297 226344 . ? . description=trf scaffold_71 . biological_region 227388 227392 0.999 + . logic_name=eponine scaffold_71 . biological_region 227917 227920 0.999 + . logic_name=eponine scaffold_71 . biological_region 227925 227926 0.999 - . logic_name=eponine scaffold_71 . biological_region 227963 227966 0.999 + . logic_name=eponine scaffold_71 . biological_region 228009 228012 0.999 - . logic_name=eponine scaffold_71 . biological_region 228056 228060 0.999 - . logic_name=eponine scaffold_71 . biological_region 228712 228717 0.999 - . logic_name=eponine scaffold_71 . repeat_region 229116 229170 . ? . description=trf scaffold_71 . biological_region 229130 229132 0.999 + . logic_name=eponine scaffold_71 . biological_region 230197 230201 0.999 - . logic_name=eponine scaffold_71 . repeat_region 230321 230328 . ? . description=dust scaffold_71 . repeat_region 230760 230821 . ? . description=trf scaffold_71 . biological_region 230800 230802 0.999 + . logic_name=eponine scaffold_71 . biological_region 230804 230808 0.999 - . logic_name=eponine scaffold_71 . biological_region 230832 230832 0.999 - . logic_name=eponine scaffold_71 . repeat_region 232407 232455 . ? . description=trf scaffold_71 . repeat_region 232419 232466 . ? . description=trf scaffold_71 . repeat_region 235284 236879 . - . description=GypsyPi-1c_I-int scaffold_71 . exon 227162 227271 . - . ID=Physo139207.6;Parent=Physo139207;constitutive=1;ensembl_phase=1;rank=6 scaffold_71 . exon 227864 228091 . - . ID=Physo139207.5;Parent=Physo139207;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_71 . exon 228136 228455 . - . ID=Physo139207.4;Parent=Physo139207;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_71 . exon 228519 229180 . - . ID=Physo139207.3;Parent=Physo139207;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_71 . exon 229210 229745 . - . ID=Physo139207.2;Parent=Physo139207;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . exon 229836 229902 . - . ID=Physo139207.1;Parent=Physo139207;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 ensembl protein_coding_gene 235910 238319 . - . ID=Physo139208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710042;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 235910 238319 . - . ID=Physo139208;Parent=Physo139208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 235910 236554 . - 0 ID=Physo139208;Parent=Physo139208;rank=5 scaffold_71 . exon 235910 236554 . - . ID=Physo139208.5;Parent=Physo139208;constitutive=1;rank=5 scaffold_71 . CDS 236671 237470 . - 0 ID=Physo139208;Parent=Physo139208;rank=4 scaffold_71 . CDS 237704 237984 . - 0 ID=Physo139208;Parent=Physo139208;rank=3 scaffold_71 . CDS 238146 238185 . - 0 ID=Physo139208;Parent=Physo139208;rank=2 scaffold_71 . CDS 238259 238319 . - 0 ID=Physo139208;Parent=Physo139208;rank=1 scaffold_71 . repeat_region 244867 244980 . + . description=Sola3-2_PS scaffold_71 . repeat_region 244983 245062 . + . description=Sola3-2_PS scaffold_71 . repeat_region 245639 245854 . + . description=Sola3-2_PS scaffold_71 . exon 236671 237470 . - . ID=Physo139208.4;Parent=Physo139208;constitutive=1;ensembl_phase=1;rank=4 scaffold_71 . exon 237704 237984 . - . ID=Physo139208.3;Parent=Physo139208;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_71 . exon 238146 238185 . - . ID=Physo139208.2;Parent=Physo139208;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_71 . exon 238259 238319 . - . ID=Physo139208.1;Parent=Physo139208;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 ensembl protein_coding_gene 241716 242927 . - . ID=Physo139209;biotype=protein_coding;description=PsAvh139 [Source:UniProtKB/TrEMBL%3BAcc:E0W5E3];external_name=estExt_fgenesh1_pg.C_710043;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 241716 242927 . - . ID=Physo139209;Parent=Physo139209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 241716 242927 . - 0 ID=Physo139209;Parent=Physo139209;rank=1 scaffold_71 . exon 241716 242927 . - . ID=Physo139209.1;Parent=Physo139209;constitutive=1;rank=1 scaffold_71 . repeat_region 245799 245806 . ? . description=dust scaffold_71 . biological_region 249278 249279 0.999 + . logic_name=eponine scaffold_71 . biological_region 249290 249290 0.999 - . logic_name=eponine scaffold_71 . biological_region 249626 249634 0.999 - . logic_name=eponine scaffold_71 . biological_region 249687 249687 0.999 + . logic_name=eponine scaffold_71 . biological_region 251402 251404 0.999 - . logic_name=eponine scaffold_71 . biological_region 251472 251473 0.999 - . logic_name=eponine scaffold_71 . biological_region 252198 252200 0.999 + . logic_name=eponine scaffold_71 . biological_region 252217 252221 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 247423 249903 . - . ID=Physo109191;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_710001;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 247423 249903 . - . ID=Physo109191;Parent=Physo109191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . exon 247423 247547 . - . ID=Physo109191.3;Parent=Physo109191;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_71 . CDS 247520 247547 . - 0 ID=Physo109191;Parent=Physo109191;rank=3 scaffold_71 . CDS 247597 249671 . - 0 ID=Physo109191;Parent=Physo109191;rank=2 scaffold_71 . exon 247597 249671 . - . ID=Physo109191.2;Parent=Physo109191;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_71 . CDS 249721 249903 . - 0 ID=Physo109191;Parent=Physo109191;rank=1 scaffold_71 . exon 249721 249903 . - . ID=Physo109191.1;Parent=Physo109191;constitutive=1;rank=1 scaffold_71 . repeat_region 261702 261728 . ? . description=trf scaffold_71 . repeat_region 262885 265802 . - . description=GypsyPi-1c_I-int scaffold_71 ensembl protein_coding_gene 256859 258918 . - . ID=Physo139211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710045;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 256859 258918 . - . ID=Physo139211;Parent=Physo139211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 256859 257174 . - 0 ID=Physo139211;Parent=Physo139211;rank=4 scaffold_71 . exon 256859 257174 . - . ID=Physo139211.4;Parent=Physo139211;constitutive=1;ensembl_phase=2;rank=4 scaffold_71 . CDS 257248 257853 . - 0 ID=Physo139211;Parent=Physo139211;rank=3 scaffold_71 . exon 257248 257853 . - . ID=Physo139211.3;Parent=Physo139211;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_71 . CDS 257947 258102 . - 0 ID=Physo139211;Parent=Physo139211;rank=2 scaffold_71 . exon 257947 258102 . - . ID=Physo139211.2;Parent=Physo139211;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_71 . CDS 258173 258918 . - 0 ID=Physo139211;Parent=Physo139211;rank=1 scaffold_71 . exon 258173 258918 . - . ID=Physo139211.1;Parent=Physo139211;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 ensembl protein_coding_gene 261846 267992 . - . ID=Physo139212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710046;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 261846 267992 . - . ID=Physo139212;Parent=Physo139212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 261846 261870 . - 0 ID=Physo139212;Parent=Physo139212;rank=10 scaffold_71 . exon 261846 261870 . - . ID=Physo139212.10;Parent=Physo139212;constitutive=1;ensembl_phase=2;rank=10 scaffold_71 . CDS 261913 262117 . - 0 ID=Physo139212;Parent=Physo139212;rank=9 scaffold_71 . exon 261913 262117 . - . ID=Physo139212.9;Parent=Physo139212;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_71 . CDS 262465 262501 . - 0 ID=Physo139212;Parent=Physo139212;rank=8 scaffold_71 . exon 262465 262501 . - . ID=Physo139212.8;Parent=Physo139212;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_71 . CDS 262575 262786 . - 0 ID=Physo139212;Parent=Physo139212;rank=7 scaffold_71 . exon 262575 262786 . - . ID=Physo139212.7;Parent=Physo139212;constitutive=1;ensembl_phase=1;rank=7 scaffold_71 . CDS 263249 263707 . - 0 ID=Physo139212;Parent=Physo139212;rank=6 scaffold_71 . exon 263249 263707 . - . ID=Physo139212.6;Parent=Physo139212;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_71 . CDS 263837 266234 . - 0 ID=Physo139212;Parent=Physo139212;rank=5 scaffold_71 . exon 263837 266234 . - . ID=Physo139212.5;Parent=Physo139212;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_71 . CDS 266299 266458 . - 0 ID=Physo139212;Parent=Physo139212;rank=4 scaffold_71 . CDS 266591 266954 . - 0 ID=Physo139212;Parent=Physo139212;rank=3 scaffold_71 . CDS 267017 267511 . - 0 ID=Physo139212;Parent=Physo139212;rank=2 scaffold_71 . CDS 267593 267992 . - 0 ID=Physo139212;Parent=Physo139212;rank=1 scaffold_71 . biological_region 266230 266231 0.999 - . logic_name=eponine scaffold_71 . biological_region 266302 266311 0.999 - . logic_name=eponine scaffold_71 . biological_region 266773 266777 0.999 + . logic_name=eponine scaffold_71 . biological_region 267221 267224 0.999 - . logic_name=eponine scaffold_71 . biological_region 267911 267915 0.999 - . logic_name=eponine scaffold_71 . biological_region 268887 268889 0.999 + . logic_name=eponine scaffold_71 . exon 266299 266458 . - . ID=Physo139212.4;Parent=Physo139212;constitutive=1;ensembl_phase=2;rank=4 scaffold_71 . exon 266591 266954 . - . ID=Physo139212.3;Parent=Physo139212;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_71 . exon 267017 267511 . - . ID=Physo139212.2;Parent=Physo139212;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_71 . exon 267593 267992 . - . ID=Physo139212.1;Parent=Physo139212;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . repeat_region 276154 276197 . ? . description=trf scaffold_71 . repeat_region 276163 276207 . ? . description=trf scaffold_71 . repeat_region 277842 278007 . ? . description=trf scaffold_71 . repeat_region 280903 281039 . ? . description=trf scaffold_71 . repeat_region 282412 282419 . ? . description=dust scaffold_71 ensembl protein_coding_gene 280424 282239 . + . ID=Physo139213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710047;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 280424 282239 . + . ID=Physo139213;Parent=Physo139213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 280424 280477 . + 0 ID=Physo139213;Parent=Physo139213;rank=1 scaffold_71 . exon 280424 280477 . + . ID=Physo139213.1;Parent=Physo139213;constitutive=1;rank=1 scaffold_71 . CDS 280622 280795 . + 0 ID=Physo139213;Parent=Physo139213;rank=2 scaffold_71 . exon 280622 280795 . + . ID=Physo139213.2;Parent=Physo139213;constitutive=1;rank=2 scaffold_71 . CDS 280903 280933 . + 0 ID=Physo139213;Parent=Physo139213;rank=3 scaffold_71 . exon 280903 280933 . + . ID=Physo139213.3;Parent=Physo139213;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_71 . CDS 281176 282239 . + 0 ID=Physo139213;Parent=Physo139213;rank=4 scaffold_71 . exon 281176 282239 . + . ID=Physo139213.4;Parent=Physo139213;constitutive=1;ensembl_phase=1;rank=4 scaffold_71 ensembl protein_coding_gene 283000 284165 . + . ID=Physo139214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710048;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 283000 284165 . + . ID=Physo139214;Parent=Physo139214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 283000 283288 . + 0 ID=Physo139214;Parent=Physo139214;rank=1 scaffold_71 . exon 283000 283288 . + . ID=Physo139214.1;Parent=Physo139214;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . CDS 283495 284165 . + 0 ID=Physo139214;Parent=Physo139214;rank=2 scaffold_71 . exon 283495 284165 . + . ID=Physo139214.2;Parent=Physo139214;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . biological_region 290372 290373 0.999 - . logic_name=eponine scaffold_71 . biological_region 292566 292566 0.999 + . logic_name=eponine scaffold_71 ensembl protein_coding_gene 285182 286724 . - . ID=Physo139215;biotype=protein_coding;description=PsAvh150 [Source:UniProtKB/TrEMBL%3BAcc:E0W5E5];external_name=estExt_fgenesh1_pg.C_710049;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 285182 286724 . - . ID=Physo139215;Parent=Physo139215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 285182 286602 . - 0 ID=Physo139215;Parent=Physo139215;rank=2 scaffold_71 . exon 285182 286602 . - . ID=Physo139215.2;Parent=Physo139215;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 286709 286724 . - 0 ID=Physo139215;Parent=Physo139215;rank=1 scaffold_71 . exon 286709 286724 . - . ID=Physo139215.1;Parent=Physo139215;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . repeat_region 296779 296814 . ? . description=trf scaffold_71 . repeat_region 297316 297329 . ? . description=dust scaffold_71 . repeat_region 297689 297715 . ? . description=trf scaffold_71 . repeat_region 297689 297717 . ? . description=dust scaffold_71 ensembl protein_coding_gene 298326 300128 . + . ID=Physo139216;biotype=protein_coding;description=PsAvh149 [Source:UniProtKB/TrEMBL%3BAcc:E0W5E6];external_name=estExt_fgenesh1_pg.C_710050;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 298326 300128 . + . ID=Physo139216;Parent=Physo139216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 298326 300128 . + 0 ID=Physo139216;Parent=Physo139216;rank=1 scaffold_71 . exon 298326 300128 . + . ID=Physo139216.1;Parent=Physo139216;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 301369 302024 . + . ID=Physo139217;biotype=protein_coding;description=PsAvh107 [Source:UniProtKB/TrEMBL%3BAcc:E0W5E7];external_name=estExt_fgenesh1_pg.C_710051;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 301369 302024 . + . ID=Physo139217;Parent=Physo139217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 301369 301890 . + 0 ID=Physo139217;Parent=Physo139217;rank=1 scaffold_71 . exon 301369 301890 . + . ID=Physo139217.1;Parent=Physo139217;constitutive=1;rank=1 scaffold_71 . CDS 301998 302024 . + 0 ID=Physo139217;Parent=Physo139217;rank=2 scaffold_71 . exon 301998 302024 . + . ID=Physo139217.2;Parent=Physo139217;constitutive=1;rank=2 scaffold_71 . biological_region 312617 312619 0.999 - . logic_name=eponine scaffold_71 ensembl protein_coding_gene 305404 308316 . - . ID=Physo139218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710052;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 305404 308316 . - . ID=Physo139218;Parent=Physo139218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 305404 308316 . - 0 ID=Physo139218;Parent=Physo139218;rank=1 scaffold_71 . exon 305404 308316 . - . ID=Physo139218.1;Parent=Physo139218;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 308511 313685 . + . ID=Physo157957;biotype=protein_coding;external_name=C_scaffold_71000002;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 308511 313685 . + . ID=Physo157957;Parent=Physo157957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 308511 308879 . + 0 ID=Physo157957;Parent=Physo157957;rank=1 scaffold_71 . exon 308511 308879 . + . ID=Physo157957.1;Parent=Physo157957;constitutive=1;rank=1 scaffold_71 . CDS 309021 310516 . + 0 ID=Physo157957;Parent=Physo157957;rank=2 scaffold_71 . exon 309021 310516 . + . ID=Physo157957.2;Parent=Physo157957;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_71 . CDS 310588 310794 . + 0 ID=Physo157957;Parent=Physo157957;rank=3 scaffold_71 . exon 310588 310794 . + . ID=Physo157957.3;Parent=Physo157957;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_71 . CDS 311083 311398 . + 0 ID=Physo157957;Parent=Physo157957;rank=4 scaffold_71 . exon 311083 311398 . + . ID=Physo157957.4;Parent=Physo157957;constitutive=1;ensembl_phase=2;rank=4 scaffold_71 . CDS 311828 312011 . + 0 ID=Physo157957;Parent=Physo157957;rank=5 scaffold_71 . exon 311828 312011 . + . ID=Physo157957.5;Parent=Physo157957;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_71 . CDS 312252 312483 . + 0 ID=Physo157957;Parent=Physo157957;rank=6 scaffold_71 . exon 312252 312483 . + . ID=Physo157957.6;Parent=Physo157957;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_71 . CDS 312574 312929 . + 0 ID=Physo157957;Parent=Physo157957;rank=7 scaffold_71 . exon 312574 312929 . + . ID=Physo157957.7;Parent=Physo157957;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_71 . CDS 313186 313685 . + 0 ID=Physo157957;Parent=Physo157957;rank=8 scaffold_71 . exon 313186 313685 . + . ID=Physo157957.8;Parent=Physo157957;constitutive=1;ensembl_phase=1;rank=8 scaffold_71 . repeat_region 315816 315855 . ? . description=dust scaffold_71 ensembl protein_coding_gene 316243 320730 . + . ID=Physo139220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710054;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 316243 320730 . + . ID=Physo139220;Parent=Physo139220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 316243 320445 . + 0 ID=Physo139220;Parent=Physo139220;rank=1 scaffold_71 . exon 316243 320730 . + . ID=Physo139220.1;Parent=Physo139220;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_71 ensembl protein_coding_gene 321998 326029 . + . ID=Physo139221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710055;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 321998 326029 . + . ID=Physo139221;Parent=Physo139221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 321998 326029 . + 0 ID=Physo139221;Parent=Physo139221;rank=1 scaffold_71 . exon 321998 326029 . + . ID=Physo139221.1;Parent=Physo139221;constitutive=1;rank=1 scaffold_71 . biological_region 325610 325610 0.999 + . logic_name=eponine scaffold_71 . repeat_region 326128 326171 . ? . description=trf scaffold_71 . repeat_region 327497 327551 . ? . description=trf scaffold_71 . biological_region 331844 331846 0.999 + . logic_name=eponine scaffold_71 . biological_region 331913 331918 0.999 + . logic_name=eponine scaffold_71 . repeat_region 332350 332386 . ? . description=trf scaffold_71 . repeat_region 332351 332371 . ? . description=trf scaffold_71 . biological_region 332560 332566 0.999 + . logic_name=eponine scaffold_71 . biological_region 332631 332638 0.999 - . logic_name=eponine scaffold_71 . biological_region 332670 332673 0.999 + . logic_name=eponine scaffold_71 . biological_region 332686 332688 0.999 + . logic_name=eponine scaffold_71 . biological_region 332749 332752 0.999 - . logic_name=eponine scaffold_71 . biological_region 332804 332809 0.999 + . logic_name=eponine scaffold_71 . biological_region 332819 332824 0.999 - . logic_name=eponine scaffold_71 . biological_region 332998 333005 0.999 - . logic_name=eponine scaffold_71 . repeat_region 333217 333259 . ? . description=trf scaffold_71 . biological_region 333622 333623 0.999 - . logic_name=eponine scaffold_71 . biological_region 333708 333709 0.999 + . logic_name=eponine scaffold_71 . biological_region 333744 333748 0.999 - . logic_name=eponine scaffold_71 . biological_region 333760 333762 0.999 - . logic_name=eponine scaffold_71 . biological_region 333777 333779 0.999 - . logic_name=eponine scaffold_71 . biological_region 334285 334290 0.999 + . logic_name=eponine scaffold_71 ensembl protein_coding_gene 329838 334097 . - . ID=Physo157958;biotype=protein_coding;external_name=C_scaffold_71000003;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 329838 334097 . - . ID=Physo157958;Parent=Physo157958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 329838 330158 . - 0 ID=Physo157958;Parent=Physo157958;rank=9 scaffold_71 . exon 329838 330158 . - . ID=Physo157958.9;Parent=Physo157958;constitutive=1;rank=9 scaffold_71 . CDS 330234 330901 . - 0 ID=Physo157958;Parent=Physo157958;rank=8 scaffold_71 . exon 330234 330901 . - . ID=Physo157958.8;Parent=Physo157958;constitutive=1;ensembl_phase=1;rank=8 scaffold_71 . CDS 330941 331146 . - 0 ID=Physo157958;Parent=Physo157958;rank=7 scaffold_71 . exon 330941 331146 . - . ID=Physo157958.7;Parent=Physo157958;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_71 . CDS 331168 331588 . - 0 ID=Physo157958;Parent=Physo157958;rank=6 scaffold_71 . exon 331168 331588 . - . ID=Physo157958.6;Parent=Physo157958;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_71 . CDS 332435 332436 . - 0 ID=Physo157958;Parent=Physo157958;rank=5 scaffold_71 . exon 332435 332436 . - . ID=Physo157958.5;Parent=Physo157958;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_71 . CDS 332473 332834 . - 0 ID=Physo157958;Parent=Physo157958;rank=4 scaffold_71 . exon 332473 332834 . - . ID=Physo157958.4;Parent=Physo157958;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_71 . CDS 332886 333299 . - 0 ID=Physo157958;Parent=Physo157958;rank=3 scaffold_71 . exon 332886 333299 . - . ID=Physo157958.3;Parent=Physo157958;constitutive=1;rank=3 scaffold_71 . CDS 333321 333539 . - 0 ID=Physo157958;Parent=Physo157958;rank=2 scaffold_71 . exon 333321 333539 . - . ID=Physo157958.2;Parent=Physo157958;constitutive=1;rank=2 scaffold_71 . CDS 333585 334097 . - 0 ID=Physo157958;Parent=Physo157958;rank=1 scaffold_71 . exon 333585 334097 . - . ID=Physo157958.1;Parent=Physo157958;constitutive=1;rank=1 scaffold_71 . repeat_region 337132 337139 . ? . description=dust scaffold_71 . repeat_region 338834 338841 . ? . description=dust scaffold_71 . repeat_region 339065 339072 . ? . description=dust scaffold_71 . repeat_region 340272 340279 . ? . description=dust scaffold_71 ensembl protein_coding_gene 335732 337112 . - . ID=Physo139223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710057;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 335732 337112 . - . ID=Physo139223;Parent=Physo139223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . exon 335732 336020 . - . ID=Physo139223.5;Parent=Physo139223;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_71 . CDS 335953 336020 . - 0 ID=Physo139223;Parent=Physo139223;rank=5 scaffold_71 . CDS 336098 336226 . - 0 ID=Physo139223;Parent=Physo139223;rank=4 scaffold_71 . exon 336098 336226 . - . ID=Physo139223.4;Parent=Physo139223;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_71 . CDS 336304 336460 . - 0 ID=Physo139223;Parent=Physo139223;rank=3 scaffold_71 . exon 336304 336460 . - . ID=Physo139223.3;Parent=Physo139223;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_71 . CDS 336544 336625 . - 0 ID=Physo139223;Parent=Physo139223;rank=2 scaffold_71 . exon 336544 336625 . - . ID=Physo139223.2;Parent=Physo139223;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 336703 337079 . - 0 ID=Physo139223;Parent=Physo139223;rank=1 scaffold_71 . exon 336703 337112 . - . ID=Physo139223.1;Parent=Physo139223;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_71 ensembl protein_coding_gene 337289 338599 . - . ID=Physo139224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710058;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 337289 338599 . - . ID=Physo139224;Parent=Physo139224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 337289 338599 . - 0 ID=Physo139224;Parent=Physo139224;rank=1 scaffold_71 . exon 337289 338599 . - . ID=Physo139224.1;Parent=Physo139224;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 339511 340375 . + . ID=Physo139225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710059;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 339511 340375 . + . ID=Physo139225;Parent=Physo139225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 339511 340184 . + 0 ID=Physo139225;Parent=Physo139225;rank=1 scaffold_71 . exon 339511 340184 . + . ID=Physo139225.1;Parent=Physo139225;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 . CDS 340327 340375 . + 0 ID=Physo139225;Parent=Physo139225;rank=2 scaffold_71 . exon 340327 340375 . + . ID=Physo139225.2;Parent=Physo139225;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 ensembl protein_coding_gene 334632 335014 . + . ID=Physo157959;biotype=protein_coding;external_name=C_scaffold_71000004;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 334632 335014 . + . ID=Physo157959;Parent=Physo157959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 334632 334669 . + 0 ID=Physo157959;Parent=Physo157959;rank=1 scaffold_71 . exon 334632 334669 . + . ID=Physo157959.1;Parent=Physo157959;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 . CDS 334775 334877 . + 0 ID=Physo157959;Parent=Physo157959;rank=2 scaffold_71 . exon 334775 334877 . + . ID=Physo157959.2;Parent=Physo157959;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 334964 335014 . + 0 ID=Physo157959;Parent=Physo157959;rank=3 scaffold_71 . exon 334964 335014 . + . ID=Physo157959.3;Parent=Physo157959;constitutive=1;rank=3 scaffold_71 . repeat_region 346908 346951 . ? . description=trf scaffold_71 . biological_region 347470 347470 0.999 - . logic_name=eponine scaffold_71 . repeat_region 351405 351448 . ? . description=trf scaffold_71 . repeat_region 351866 352019 . ? . description=trf scaffold_71 . biological_region 353279 353287 0.999 - . logic_name=eponine scaffold_71 . repeat_region 353491 353536 . ? . description=trf scaffold_71 ensembl protein_coding_gene 347050 351140 . - . ID=Physo139226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710060;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 347050 351140 . - . ID=Physo139226;Parent=Physo139226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 347050 348597 . - 0 ID=Physo139226;Parent=Physo139226;rank=3 scaffold_71 . exon 347050 348597 . - . ID=Physo139226.3;Parent=Physo139226;constitutive=1;rank=3 scaffold_71 . CDS 348636 349153 . - 0 ID=Physo139226;Parent=Physo139226;rank=2 scaffold_71 . exon 348636 349153 . - . ID=Physo139226.2;Parent=Physo139226;constitutive=1;ensembl_phase=1;rank=2 scaffold_71 . CDS 349187 351140 . - 0 ID=Physo139226;Parent=Physo139226;rank=1 scaffold_71 . exon 349187 351140 . - . ID=Physo139226.1;Parent=Physo139226;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_71 . repeat_region 359377 359610 . + . description=GypsyPi-1c_I-int scaffold_71 . repeat_region 360174 360186 . ? . description=dust scaffold_71 ensembl protein_coding_gene 358364 359002 . - . ID=Physo139227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710061;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 358364 359002 . - . ID=Physo139227;Parent=Physo139227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 358364 359002 . - 0 ID=Physo139227;Parent=Physo139227;rank=1 scaffold_71 . exon 358364 359002 . - . ID=Physo139227.1;Parent=Physo139227;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 360948 361469 . - . ID=Physo139228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710062;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 360948 361469 . - . ID=Physo139228;Parent=Physo139228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 360948 361469 . - 0 ID=Physo139228;Parent=Physo139228;rank=1 scaffold_71 . exon 360948 361469 . - . ID=Physo139228.1;Parent=Physo139228;constitutive=1;rank=1 scaffold_71 . repeat_region 365252 365287 . ? . description=trf scaffold_71 . repeat_region 365252 365296 . ? . description=trf scaffold_71 . repeat_region 365285 365325 . ? . description=trf scaffold_71 . biological_region 365656 365658 0.999 - . logic_name=eponine scaffold_71 . biological_region 366347 366349 0.999 + . logic_name=eponine scaffold_71 . biological_region 369875 369876 0.999 - . logic_name=eponine scaffold_71 . repeat_region 370728 371045 . + . description=Polinton-1_PI scaffold_71 . repeat_region 371245 372202 . - . description=Polinton-1_PI scaffold_71 . repeat_region 372469 373036 . - . description=Polinton-1_PI scaffold_71 ensembl protein_coding_gene 365991 368489 . + . ID=Physo139229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710063;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 365991 368489 . + . ID=Physo139229;Parent=Physo139229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 365991 366152 . + 0 ID=Physo139229;Parent=Physo139229;rank=1 scaffold_71 . exon 365991 366152 . + . ID=Physo139229.1;Parent=Physo139229;constitutive=1;rank=1 scaffold_71 . CDS 366264 366839 . + 0 ID=Physo139229;Parent=Physo139229;rank=2 scaffold_71 . exon 366264 366839 . + . ID=Physo139229.2;Parent=Physo139229;constitutive=1;rank=2 scaffold_71 . CDS 366901 367170 . + 0 ID=Physo139229;Parent=Physo139229;rank=3 scaffold_71 . exon 366901 367170 . + . ID=Physo139229.3;Parent=Physo139229;constitutive=1;rank=3 scaffold_71 . CDS 367212 368489 . + 0 ID=Physo139229;Parent=Physo139229;rank=4 scaffold_71 . exon 367212 368489 . + . ID=Physo139229.4;Parent=Physo139229;constitutive=1;rank=4 scaffold_71 ensembl protein_coding_gene 371685 372050 . - . ID=Physo139230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710064;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 371685 372050 . - . ID=Physo139230;Parent=Physo139230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 371685 372050 . - 0 ID=Physo139230;Parent=Physo139230;rank=1 scaffold_71 . exon 371685 372050 . - . ID=Physo139230.1;Parent=Physo139230;constitutive=1;rank=1 scaffold_71 . repeat_region 375449 375458 . ? . description=dust scaffold_71 . repeat_region 382512 383591 . - . description=Polinton-1_PI scaffold_71 . repeat_region 389373 389396 . ? . description=trf scaffold_71 . repeat_region 391206 391321 . - . description=GypsyPi-1c_I-int scaffold_71 ensembl protein_coding_gene 387842 388548 . - . ID=Physo139231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710065;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 387842 388548 . - . ID=Physo139231;Parent=Physo139231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 387842 387862 . - 0 ID=Physo139231;Parent=Physo139231;rank=2 scaffold_71 . exon 387842 387862 . - . ID=Physo139231.2;Parent=Physo139231;constitutive=1;rank=2 scaffold_71 . CDS 388066 388548 . - 0 ID=Physo139231;Parent=Physo139231;rank=1 scaffold_71 . exon 388066 388548 . - . ID=Physo139231.1;Parent=Physo139231;constitutive=1;rank=1 scaffold_71 ensembl protein_coding_gene 392050 394094 . + . ID=Physo139232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710066;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 392050 394094 . + . ID=Physo139232;Parent=Physo139232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 392050 392487 . + 0 ID=Physo139232;Parent=Physo139232;rank=1 scaffold_71 . exon 392050 392487 . + . ID=Physo139232.1;Parent=Physo139232;constitutive=1;rank=1 scaffold_71 . CDS 392585 393247 . + 0 ID=Physo139232;Parent=Physo139232;rank=2 scaffold_71 . exon 392585 393247 . + . ID=Physo139232.2;Parent=Physo139232;constitutive=1;rank=2 scaffold_71 . CDS 393379 393964 . + 0 ID=Physo139232;Parent=Physo139232;rank=3 scaffold_71 . CDS 394051 394094 . + 0 ID=Physo139232;Parent=Physo139232;rank=4 scaffold_71 . biological_region 393308 393313 0.999 - . logic_name=eponine scaffold_71 . biological_region 393769 393773 0.999 + . logic_name=eponine scaffold_71 . biological_region 393818 393819 0.999 + . logic_name=eponine scaffold_71 . biological_region 393862 393867 0.999 - . logic_name=eponine scaffold_71 . biological_region 398131 398133 0.999 - . logic_name=eponine scaffold_71 . biological_region 399974 399978 0.999 + . logic_name=eponine scaffold_71 . repeat_region 400737 401859 . ? . description=dust scaffold_71 . biological_region 402902 402904 0.999 - . logic_name=eponine scaffold_71 . exon 393379 393964 . + . ID=Physo139232.3;Parent=Physo139232;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_71 . exon 394051 394094 . + . ID=Physo139232.4;Parent=Physo139232;constitutive=1;ensembl_phase=1;rank=4 scaffold_71 ensembl protein_coding_gene 397974 402388 . - . ID=Physo139233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710067;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 397974 402388 . - . ID=Physo139233;Parent=Physo139233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 397974 400584 . - 0 ID=Physo139233;Parent=Physo139233;rank=2 scaffold_71 . exon 397974 400584 . - . ID=Physo139233.2;Parent=Physo139233;constitutive=1;ensembl_phase=2;rank=2 scaffold_71 . CDS 401862 402388 . - 0 ID=Physo139233;Parent=Physo139233;rank=1 scaffold_71 . exon 401862 402388 . - . ID=Physo139233.1;Parent=Physo139233;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_71 ensembl protein_coding_gene 402745 403059 . - . ID=Physo139234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_710068;logic_name=jgi_physo1_1 scaffold_71 ensembl transcript 402745 403059 . - . ID=Physo139234;Parent=Physo139234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_71 . CDS 402745 403059 . - 0 ID=Physo139234;Parent=Physo139234;rank=1 scaffold_71 . exon 402745 403059 . - . ID=Physo139234.1;Parent=Physo139234;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_69 1 408842 scaffold_69 . repeat_region 5225 5253 . ? . description=trf scaffold_69 . repeat_region 5903 5929 . ? . description=trf scaffold_69 . repeat_region 6268 7030 . ? . description=trf scaffold_69 . biological_region 6338 6341 0.999 + . logic_name=eponine scaffold_69 . biological_region 6436 6441 0.999 + . logic_name=eponine scaffold_69 . biological_region 6447 6452 0.999 + . logic_name=eponine scaffold_69 . biological_region 6488 6490 0.999 + . logic_name=eponine scaffold_69 . biological_region 6540 6541 0.999 + . logic_name=eponine scaffold_69 . biological_region 6560 6562 0.999 + . logic_name=eponine scaffold_69 . repeat_region 6698 6765 . + . description=(TCG)n scaffold_69 . biological_region 6712 6716 0.999 + . logic_name=eponine scaffold_69 . repeat_region 6719 6742 . ? . description=trf scaffold_69 . repeat_region 6739 6765 . ? . description=dust scaffold_69 . repeat_region 6739 6765 . ? . description=trf scaffold_69 . biological_region 6823 6828 0.999 + . logic_name=eponine scaffold_69 . biological_region 6834 6839 0.999 + . logic_name=eponine scaffold_69 . biological_region 6875 6877 0.999 + . logic_name=eponine scaffold_69 . biological_region 6926 6929 0.999 + . logic_name=eponine scaffold_69 . biological_region 6946 6950 0.999 + . logic_name=eponine scaffold_69 . biological_region 7015 7019 0.999 - . logic_name=eponine scaffold_69 . biological_region 7054 7056 0.999 + . logic_name=eponine scaffold_69 . repeat_region 7440 7478 . ? . description=trf scaffold_69 . repeat_region 7446 7489 . ? . description=trf scaffold_69 . repeat_region 7814 7866 . ? . description=dust scaffold_69 . repeat_region 8089 8140 . ? . description=trf scaffold_69 . biological_region 8103 8103 0.999 + . logic_name=eponine scaffold_69 . biological_region 8154 8156 0.999 + . logic_name=eponine scaffold_69 . biological_region 8804 8805 0.999 - . logic_name=eponine scaffold_69 ensembl protein_coding_gene 5188 7893 . - . ID=Physo138992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690001;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 5188 7893 . - . ID=Physo138992;Parent=Physo138992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 5188 7893 . - 0 ID=Physo138992;Parent=Physo138992;rank=1 scaffold_69 . exon 5188 7893 . - . ID=Physo138992.1;Parent=Physo138992;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 8051 9832 . + . ID=Physo138993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690002;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 8051 9832 . + . ID=Physo138993;Parent=Physo138993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 8051 9832 . + 0 ID=Physo138993;Parent=Physo138993;rank=1 scaffold_69 . exon 8051 9832 . + . ID=Physo138993.1;Parent=Physo138993;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 9920 11173 . - . ID=Physo138994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690003;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 9920 11173 . - . ID=Physo138994;Parent=Physo138994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . exon 9920 10923 . - . ID=Physo138994.2;Parent=Physo138994;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_69 . CDS 10076 10923 . - 0 ID=Physo138994;Parent=Physo138994;rank=2 scaffold_69 . CDS 11013 11157 . - 0 ID=Physo138994;Parent=Physo138994;rank=1 scaffold_69 . exon 11013 11173 . - . ID=Physo138994.1;Parent=Physo138994;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_69 ensembl protein_coding_gene 11938 13952 . + . ID=Physo138995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690004;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 11938 13952 . + . ID=Physo138995;Parent=Physo138995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 11938 12159 . + 0 ID=Physo138995;Parent=Physo138995;rank=1 scaffold_69 . exon 11938 12159 . + . ID=Physo138995.1;Parent=Physo138995;constitutive=1;rank=1 scaffold_69 . CDS 12271 13084 . + 0 ID=Physo138995;Parent=Physo138995;rank=2 scaffold_69 . exon 12271 13084 . + . ID=Physo138995.2;Parent=Physo138995;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_69 . CDS 13281 13345 . + 0 ID=Physo138995;Parent=Physo138995;rank=3 scaffold_69 . exon 13281 13640 . + . ID=Physo138995.3;Parent=Physo138995;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_69 . exon 13706 13952 . + . ID=Physo138995.4;Parent=Physo138995;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_69 ensembl protein_coding_gene 15091 22511 . - . ID=Physo138996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690005;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 15091 22511 . - . ID=Physo138996;Parent=Physo138996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 15091 16279 . - 0 ID=Physo138996;Parent=Physo138996;rank=9 scaffold_69 . exon 15091 16279 . - . ID=Physo138996.9;Parent=Physo138996;constitutive=1;ensembl_phase=2;rank=9 scaffold_69 . CDS 16463 17073 . - 0 ID=Physo138996;Parent=Physo138996;rank=8 scaffold_69 . exon 16463 17073 . - . ID=Physo138996.8;Parent=Physo138996;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_69 . CDS 17236 17538 . - 0 ID=Physo138996;Parent=Physo138996;rank=7 scaffold_69 . exon 17236 17538 . - . ID=Physo138996.7;Parent=Physo138996;constitutive=1;rank=7 scaffold_69 . CDS 17579 17827 . - 0 ID=Physo138996;Parent=Physo138996;rank=6 scaffold_69 . exon 17579 17827 . - . ID=Physo138996.6;Parent=Physo138996;constitutive=1;rank=6 scaffold_69 . CDS 18546 18816 . - 0 ID=Physo138996;Parent=Physo138996;rank=5 scaffold_69 . exon 18546 18816 . - . ID=Physo138996.5;Parent=Physo138996;constitutive=1;ensembl_phase=2;rank=5 scaffold_69 . CDS 18836 18845 . - 0 ID=Physo138996;Parent=Physo138996;rank=4 scaffold_69 . exon 18836 18845 . - . ID=Physo138996.4;Parent=Physo138996;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_69 . CDS 18869 19788 . - 0 ID=Physo138996;Parent=Physo138996;rank=3 scaffold_69 . exon 18869 19788 . - . ID=Physo138996.3;Parent=Physo138996;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_69 . CDS 19983 21515 . - 0 ID=Physo138996;Parent=Physo138996;rank=2 scaffold_69 . CDS 21556 22511 . - 0 ID=Physo138996;Parent=Physo138996;rank=1 scaffold_69 . biological_region 20534 20539 0.999 + . logic_name=eponine scaffold_69 . biological_region 21025 21033 0.999 + . logic_name=eponine scaffold_69 . repeat_region 21030 21062 . ? . description=trf scaffold_69 . biological_region 21056 21061 0.999 + . logic_name=eponine scaffold_69 . biological_region 21095 21098 0.999 + . logic_name=eponine scaffold_69 . repeat_region 24487 24628 . ? . description=trf scaffold_69 . repeat_region 24658 24728 . ? . description=trf scaffold_69 . repeat_region 26199 26206 . ? . description=dust scaffold_69 . exon 19983 21515 . - . ID=Physo138996.2;Parent=Physo138996;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_69 . exon 21556 22511 . - . ID=Physo138996.1;Parent=Physo138996;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 26275 27757 . - . ID=Physo138998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690007;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 26275 27757 . - . ID=Physo138998;Parent=Physo138998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 26275 26877 . - 0 ID=Physo138998;Parent=Physo138998;rank=3 scaffold_69 . exon 26275 26877 . - . ID=Physo138998.3;Parent=Physo138998;constitutive=1;rank=3 scaffold_69 . CDS 26900 27257 . - 0 ID=Physo138998;Parent=Physo138998;rank=2 scaffold_69 . exon 26900 27257 . - . ID=Physo138998.2;Parent=Physo138998;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 27294 27757 . - 0 ID=Physo138998;Parent=Physo138998;rank=1 scaffold_69 . exon 27294 27757 . - . ID=Physo138998.1;Parent=Physo138998;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 28890 30374 . - . ID=Physo138999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690008;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 28890 30374 . - . ID=Physo138999;Parent=Physo138999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . exon 28890 30374 . - . ID=Physo138999.1;Parent=Physo138999;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_69 . CDS 28938 30374 . - 0 ID=Physo138999;Parent=Physo138999;rank=1 scaffold_69 ensembl protein_coding_gene 24805 26098 . + . ID=Physo157908;biotype=protein_coding;external_name=C_scaffold_69000003;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 24805 26098 . + . ID=Physo157908;Parent=Physo157908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 24805 25909 . + 0 ID=Physo157908;Parent=Physo157908;rank=1 scaffold_69 . exon 24805 25909 . + . ID=Physo157908.1;Parent=Physo157908;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 26082 26098 . + 0 ID=Physo157908;Parent=Physo157908;rank=2 scaffold_69 . exon 26082 26098 . + . ID=Physo157908.2;Parent=Physo157908;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 ensembl protein_coding_gene 31291 32704 . + . ID=Physo139000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690009;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 31291 32704 . + . ID=Physo139000;Parent=Physo139000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 31291 31582 . + 0 ID=Physo139000;Parent=Physo139000;rank=1 scaffold_69 . exon 31291 31582 . + . ID=Physo139000.1;Parent=Physo139000;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 31710 31941 . + 0 ID=Physo139000;Parent=Physo139000;rank=2 scaffold_69 . exon 31710 31941 . + . ID=Physo139000.2;Parent=Physo139000;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_69 . CDS 32104 32704 . + 0 ID=Physo139000;Parent=Physo139000;rank=3 scaffold_69 . exon 32104 32704 . + . ID=Physo139000.3;Parent=Physo139000;constitutive=1;ensembl_phase=2;rank=3 scaffold_69 ensembl protein_coding_gene 34178 37811 . - . ID=Physo139001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690010;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 34178 37811 . - . ID=Physo139001;Parent=Physo139001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 34178 35125 . - 0 ID=Physo139001;Parent=Physo139001;rank=3 scaffold_69 . exon 34178 35125 . - . ID=Physo139001.3;Parent=Physo139001;constitutive=1;rank=3 scaffold_69 . CDS 35200 37227 . - 0 ID=Physo139001;Parent=Physo139001;rank=2 scaffold_69 . exon 35200 37227 . - . ID=Physo139001.2;Parent=Physo139001;constitutive=1;rank=2 scaffold_69 . CDS 37260 37811 . - 0 ID=Physo139001;Parent=Physo139001;rank=1 scaffold_69 . exon 37260 37811 . - . ID=Physo139001.1;Parent=Physo139001;constitutive=1;rank=1 scaffold_69 . repeat_region 39413 40906 . ? . description=trf scaffold_69 . repeat_region 39444 40936 . ? . description=trf scaffold_69 . biological_region 43486 43487 0.999 - . logic_name=eponine scaffold_69 . repeat_region 43959 43998 . ? . description=dust scaffold_69 . repeat_region 43959 43998 . ? . description=trf scaffold_69 . repeat_region 44062 44070 . ? . description=dust scaffold_69 . repeat_region 47195 47203 . ? . description=dust scaffold_69 . repeat_region 47262 47429 . + . description=Polinton-1_PI scaffold_69 ensembl protein_coding_gene 46017 46859 . - . ID=Physo139002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690011;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 46017 46859 . - . ID=Physo139002;Parent=Physo139002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 46017 46859 . - 0 ID=Physo139002;Parent=Physo139002;rank=1 scaffold_69 . exon 46017 46859 . - . ID=Physo139002.1;Parent=Physo139002;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 51864 54458 . + . ID=Physo139003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690012;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 51864 54458 . + . ID=Physo139003;Parent=Physo139003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 51864 54458 . + 0 ID=Physo139003;Parent=Physo139003;rank=1 scaffold_69 . exon 51864 54458 . + . ID=Physo139003.1;Parent=Physo139003;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 58227 59759 . + . ID=Physo139004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690013;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 58227 59759 . + . ID=Physo139004;Parent=Physo139004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 58227 59759 . + 0 ID=Physo139004;Parent=Physo139004;rank=1 scaffold_69 . exon 58227 59759 . + . ID=Physo139004.1;Parent=Physo139004;constitutive=1;rank=1 scaffold_69 . repeat_region 60685 60893 . ? . description=trf scaffold_69 . repeat_region 61014 61056 . ? . description=trf scaffold_69 . repeat_region 61032 61089 . ? . description=trf scaffold_69 . repeat_region 61237 61244 . ? . description=dust scaffold_69 . repeat_region 67127 67140 . ? . description=dust scaffold_69 . biological_region 67171 67175 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 60599 61265 . + . ID=Physo139005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690014;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 60599 61265 . + . ID=Physo139005;Parent=Physo139005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . exon 60599 61265 . + . ID=Physo139005.1;Parent=Physo139005;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_69 . CDS 60600 61196 . + 0 ID=Physo139005;Parent=Physo139005;rank=1 scaffold_69 ensembl protein_coding_gene 63981 65768 . + . ID=Physo139006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690015;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 63981 65768 . + . ID=Physo139006;Parent=Physo139006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 63981 65768 . + 0 ID=Physo139006;Parent=Physo139006;rank=1 scaffold_69 . exon 63981 65768 . + . ID=Physo139006.1;Parent=Physo139006;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 66119 67091 . + . ID=Physo139007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690016;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 66119 67091 . + . ID=Physo139007;Parent=Physo139007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 66119 66526 . + 0 ID=Physo139007;Parent=Physo139007;rank=1 scaffold_69 . exon 66119 66526 . + . ID=Physo139007.1;Parent=Physo139007;constitutive=1;rank=1 scaffold_69 . CDS 66579 66641 . + 0 ID=Physo139007;Parent=Physo139007;rank=2 scaffold_69 . exon 66579 66641 . + . ID=Physo139007.2;Parent=Physo139007;constitutive=1;rank=2 scaffold_69 . CDS 66695 67035 . + 0 ID=Physo139007;Parent=Physo139007;rank=3 scaffold_69 . exon 66695 67035 . + . ID=Physo139007.3;Parent=Physo139007;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_69 . CDS 67079 67091 . + 0 ID=Physo139007;Parent=Physo139007;rank=4 scaffold_69 . exon 67079 67091 . + . ID=Physo139007.4;Parent=Physo139007;constitutive=1;ensembl_phase=2;rank=4 scaffold_69 ensembl protein_coding_gene 72506 74792 . - . ID=Physo139008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690017;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 72506 74792 . - . ID=Physo139008;Parent=Physo139008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 72506 73412 . - 0 ID=Physo139008;Parent=Physo139008;rank=2 scaffold_69 . exon 72506 73412 . - . ID=Physo139008.2;Parent=Physo139008;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 73603 74792 . - 0 ID=Physo139008;Parent=Physo139008;rank=1 scaffold_69 . exon 73603 74792 . - . ID=Physo139008.1;Parent=Physo139008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 79352 80950 . - . ID=Physo139009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690018;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 79352 80950 . - . ID=Physo139009;Parent=Physo139009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 79352 80950 . - 0 ID=Physo139009;Parent=Physo139009;rank=1 scaffold_69 . exon 79352 80950 . - . ID=Physo139009.1;Parent=Physo139009;constitutive=1;rank=1 scaffold_69 . biological_region 80601 80603 0.999 - . logic_name=eponine scaffold_69 . repeat_region 83080 83087 . ? . description=dust scaffold_69 . repeat_region 83480 83511 . ? . description=trf scaffold_69 . repeat_region 83836 84127 . + . description=GypsyPi-1c_LTR scaffold_69 . repeat_region 85997 86031 . ? . description=trf scaffold_69 ensembl protein_coding_gene 82165 83614 . + . ID=Physo139010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690019;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 82165 83614 . + . ID=Physo139010;Parent=Physo139010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 82165 83023 . + 0 ID=Physo139010;Parent=Physo139010;rank=1 scaffold_69 . exon 82165 83023 . + . ID=Physo139010.1;Parent=Physo139010;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 83292 83614 . + 0 ID=Physo139010;Parent=Physo139010;rank=2 scaffold_69 . exon 83292 83614 . + . ID=Physo139010.2;Parent=Physo139010;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 ensembl protein_coding_gene 98895 100544 . + . ID=Physo139011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690020;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 98895 100544 . + . ID=Physo139011;Parent=Physo139011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 98895 100544 . + 0 ID=Physo139011;Parent=Physo139011;rank=1 scaffold_69 . exon 98895 100544 . + . ID=Physo139011.1;Parent=Physo139011;constitutive=1;rank=1 scaffold_69 . biological_region 101296 101296 0.999 - . logic_name=eponine scaffold_69 . biological_region 101493 101497 0.999 + . logic_name=eponine scaffold_69 . biological_region 101549 101552 0.999 + . logic_name=eponine scaffold_69 . biological_region 101569 101572 0.999 + . logic_name=eponine scaffold_69 . biological_region 101925 101928 0.999 - . logic_name=eponine scaffold_69 . biological_region 104061 104061 0.999 - . logic_name=eponine scaffold_69 . repeat_region 106567 106577 . ? . description=dust scaffold_69 . biological_region 107680 107681 0.999 + . logic_name=eponine scaffold_69 . biological_region 109035 109036 0.999 - . logic_name=eponine scaffold_69 . biological_region 109037 109039 0.999 + . logic_name=eponine scaffold_69 . biological_region 109520 109522 0.999 + . logic_name=eponine scaffold_69 . biological_region 109685 109689 0.999 - . logic_name=eponine scaffold_69 ensembl protein_coding_gene 107697 108530 . - . ID=Physo109183;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_690001;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 107697 108530 . - . ID=Physo109183;Parent=Physo109183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 107697 108530 . - 0 ID=Physo109183;Parent=Physo109183;rank=1 scaffold_69 . exon 107697 108530 . - . ID=Physo109183.1;Parent=Physo109183;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 100769 102334 . - . ID=Physo139012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690021;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 100769 102334 . - . ID=Physo139012;Parent=Physo139012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 100769 101026 . - 0 ID=Physo139012;Parent=Physo139012;rank=3 scaffold_69 . exon 100769 101026 . - . ID=Physo139012.3;Parent=Physo139012;constitutive=1;rank=3 scaffold_69 . CDS 101050 102075 . - 0 ID=Physo139012;Parent=Physo139012;rank=2 scaffold_69 . exon 101050 102075 . - . ID=Physo139012.2;Parent=Physo139012;constitutive=1;rank=2 scaffold_69 . CDS 102143 102334 . - 0 ID=Physo139012;Parent=Physo139012;rank=1 scaffold_69 . exon 102143 102334 . - . ID=Physo139012.1;Parent=Physo139012;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 104421 106312 . - . ID=Physo139013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690022;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 104421 106312 . - . ID=Physo139013;Parent=Physo139013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 104421 104464 . - 0 ID=Physo139013;Parent=Physo139013;rank=3 scaffold_69 . exon 104421 104464 . - . ID=Physo139013.3;Parent=Physo139013;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 104566 105890 . - 0 ID=Physo139013;Parent=Physo139013;rank=2 scaffold_69 . exon 104566 105890 . - . ID=Physo139013.2;Parent=Physo139013;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 105975 106312 . - 0 ID=Physo139013;Parent=Physo139013;rank=1 scaffold_69 . exon 105975 106312 . - . ID=Physo139013.1;Parent=Physo139013;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 108738 111782 . - . ID=Physo139015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690024;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 108738 111782 . - . ID=Physo139015;Parent=Physo139015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 108738 111782 . - 0 ID=Physo139015;Parent=Physo139015;rank=1 scaffold_69 . exon 108738 111782 . - . ID=Physo139015.1;Parent=Physo139015;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 112093 113610 . + . ID=Physo139016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690025;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 112093 113610 . + . ID=Physo139016;Parent=Physo139016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 112093 112236 . + 0 ID=Physo139016;Parent=Physo139016;rank=1 scaffold_69 . exon 112093 112236 . + . ID=Physo139016.1;Parent=Physo139016;constitutive=1;rank=1 scaffold_69 . CDS 112304 113329 . + 0 ID=Physo139016;Parent=Physo139016;rank=2 scaffold_69 . exon 112304 113329 . + . ID=Physo139016.2;Parent=Physo139016;constitutive=1;rank=2 scaffold_69 . CDS 113353 113610 . + 0 ID=Physo139016;Parent=Physo139016;rank=3 scaffold_69 . exon 113353 113610 . + . ID=Physo139016.3;Parent=Physo139016;constitutive=1;rank=3 scaffold_69 ensembl protein_coding_gene 113835 115484 . - . ID=Physo139017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690026;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 113835 115484 . - . ID=Physo139017;Parent=Physo139017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 113835 115484 . - 0 ID=Physo139017;Parent=Physo139017;rank=1 scaffold_69 . exon 113835 115484 . - . ID=Physo139017.1;Parent=Physo139017;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 118117 118937 . - . ID=Physo139018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690027;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 118117 118937 . - . ID=Physo139018;Parent=Physo139018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 118117 118132 . - 0 ID=Physo139018;Parent=Physo139018;rank=2 scaffold_69 . exon 118117 118132 . - . ID=Physo139018.2;Parent=Physo139018;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 118174 118937 . - 0 ID=Physo139018;Parent=Physo139018;rank=1 scaffold_69 . exon 118174 118937 . - . ID=Physo139018.1;Parent=Physo139018;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 119470 121080 . + . ID=Physo139019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690028;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 119470 121080 . + . ID=Physo139019;Parent=Physo139019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 119470 119984 . + 0 ID=Physo139019;Parent=Physo139019;rank=1 scaffold_69 . exon 119470 119984 . + . ID=Physo139019.1;Parent=Physo139019;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 120051 120364 . + 0 ID=Physo139019;Parent=Physo139019;rank=2 scaffold_69 . CDS 120644 121080 . + 0 ID=Physo139019;Parent=Physo139019;rank=3 scaffold_69 . repeat_region 121152 121164 . ? . description=dust scaffold_69 . repeat_region 122944 122990 . ? . description=trf scaffold_69 . repeat_region 122944 122993 . ? . description=dust scaffold_69 . repeat_region 127198 127232 . ? . description=trf scaffold_69 . biological_region 127977 127982 0.999 - . logic_name=eponine scaffold_69 . exon 120051 120364 . + . ID=Physo139019.2;Parent=Physo139019;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_69 . exon 120644 121080 . + . ID=Physo139019.3;Parent=Physo139019;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 ensembl protein_coding_gene 124532 125077 . - . ID=Physo139020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690029;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 124532 125077 . - . ID=Physo139020;Parent=Physo139020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 124532 124867 . - 0 ID=Physo139020;Parent=Physo139020;rank=2 scaffold_69 . exon 124532 124867 . - . ID=Physo139020.2;Parent=Physo139020;constitutive=1;rank=2 scaffold_69 . CDS 125021 125077 . - 0 ID=Physo139020;Parent=Physo139020;rank=1 scaffold_69 . exon 125021 125077 . - . ID=Physo139020.1;Parent=Physo139020;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 125585 128062 . + . ID=Physo139021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690030;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 125585 128062 . + . ID=Physo139021;Parent=Physo139021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 125585 125612 . + 0 ID=Physo139021;Parent=Physo139021;rank=1 scaffold_69 . exon 125585 125612 . + . ID=Physo139021.1;Parent=Physo139021;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 125683 125847 . + 0 ID=Physo139021;Parent=Physo139021;rank=2 scaffold_69 . exon 125683 125847 . + . ID=Physo139021.2;Parent=Physo139021;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 125912 126037 . + 0 ID=Physo139021;Parent=Physo139021;rank=3 scaffold_69 . exon 125912 126037 . + . ID=Physo139021.3;Parent=Physo139021;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 126108 126218 . + 0 ID=Physo139021;Parent=Physo139021;rank=4 scaffold_69 . exon 126108 126218 . + . ID=Physo139021.4;Parent=Physo139021;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_69 . CDS 126293 126472 . + 0 ID=Physo139021;Parent=Physo139021;rank=5 scaffold_69 . exon 126293 126472 . + . ID=Physo139021.5;Parent=Physo139021;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_69 . CDS 126548 127166 . + 0 ID=Physo139021;Parent=Physo139021;rank=6 scaffold_69 . exon 126548 127166 . + . ID=Physo139021.6;Parent=Physo139021;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_69 . CDS 127213 127264 . + 0 ID=Physo139021;Parent=Physo139021;rank=7 scaffold_69 . exon 127213 127264 . + . ID=Physo139021.7;Parent=Physo139021;constitutive=1;ensembl_phase=2;rank=7 scaffold_69 . CDS 127406 128062 . + 0 ID=Physo139021;Parent=Physo139021;rank=8 scaffold_69 . exon 127406 128062 . + . ID=Physo139021.8;Parent=Physo139021;constitutive=1;rank=8 scaffold_69 ensembl protein_coding_gene 130772 132556 . - . ID=Physo139022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690031;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 130772 132556 . - . ID=Physo139022;Parent=Physo139022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 130772 132556 . - 0 ID=Physo139022;Parent=Physo139022;rank=1 scaffold_69 . exon 130772 132556 . - . ID=Physo139022.1;Parent=Physo139022;constitutive=1;rank=1 scaffold_69 . repeat_region 141422 141439 . ? . description=dust scaffold_69 . repeat_region 143190 143221 . ? . description=trf scaffold_69 . repeat_region 147761 147809 . ? . description=trf scaffold_69 . biological_region 148487 148489 0.999 - . logic_name=eponine scaffold_69 ensembl protein_coding_gene 151241 152182 . - . ID=Physo139023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690032;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 151241 152182 . - . ID=Physo139023;Parent=Physo139023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 151241 152182 . - 0 ID=Physo139023;Parent=Physo139023;rank=1 scaffold_69 . exon 151241 152182 . - . ID=Physo139023.1;Parent=Physo139023;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 153756 154783 . + . ID=Physo139024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690033;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 153756 154783 . + . ID=Physo139024;Parent=Physo139024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . exon 153756 154783 . + . ID=Physo139024.1;Parent=Physo139024;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_69 . CDS 153829 154647 . + 0 ID=Physo139024;Parent=Physo139024;rank=1 scaffold_69 ensembl protein_coding_gene 154975 156441 . - . ID=Physo139025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690034;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 154975 156441 . - . ID=Physo139025;Parent=Physo139025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 154975 155603 . - 0 ID=Physo139025;Parent=Physo139025;rank=3 scaffold_69 . exon 154975 155603 . - . ID=Physo139025.3;Parent=Physo139025;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 155689 156282 . - 0 ID=Physo139025;Parent=Physo139025;rank=2 scaffold_69 . exon 155689 156282 . - . ID=Physo139025.2;Parent=Physo139025;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 156375 156441 . - 0 ID=Physo139025;Parent=Physo139025;rank=1 scaffold_69 . exon 156375 156441 . - . ID=Physo139025.1;Parent=Physo139025;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 ensembl protein_coding_gene 159450 163355 . + . ID=Physo139026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690035;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 159450 163355 . + . ID=Physo139026;Parent=Physo139026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 159450 159543 . + 0 ID=Physo139026;Parent=Physo139026;rank=1 scaffold_69 . exon 159450 159543 . + . ID=Physo139026.1;Parent=Physo139026;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 159656 159947 . + 0 ID=Physo139026;Parent=Physo139026;rank=2 scaffold_69 . CDS 160529 161117 . + 0 ID=Physo139026;Parent=Physo139026;rank=3 scaffold_69 . CDS 161407 161994 . + 0 ID=Physo139026;Parent=Physo139026;rank=4 scaffold_69 . CDS 162062 163208 . + 0 ID=Physo139026;Parent=Physo139026;rank=5 scaffold_69 . CDS 163342 163355 . + 0 ID=Physo139026;Parent=Physo139026;rank=6 scaffold_69 . biological_region 159665 159669 0.999 + . logic_name=eponine scaffold_69 . repeat_region 160019 160322 . + . description=GypsyPi-1c_LTR scaffold_69 . repeat_region 160323 163204 . + . description=GypsyPi-1c_I-int scaffold_69 . repeat_region 162101 162264 . ? . description=trf scaffold_69 . repeat_region 162247 162349 . ? . description=trf scaffold_69 . biological_region 162532 162533 0.999 - . logic_name=eponine scaffold_69 . repeat_region 163219 163274 . ? . description=trf scaffold_69 . repeat_region 166534 166595 . ? . description=trf scaffold_69 . repeat_region 166889 167039 . ? . description=trf scaffold_69 . repeat_region 167165 167217 . ? . description=trf scaffold_69 . repeat_region 167270 169599 . + . description=GypsyPi-1c_I-int scaffold_69 . biological_region 169019 169024 0.999 - . logic_name=eponine scaffold_69 . exon 159656 159947 . + . ID=Physo139026.2;Parent=Physo139026;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_69 . exon 160529 161117 . + . ID=Physo139026.3;Parent=Physo139026;constitutive=1;ensembl_phase=2;rank=3 scaffold_69 . exon 161407 161994 . + . ID=Physo139026.4;Parent=Physo139026;constitutive=1;rank=4 scaffold_69 . exon 162062 163208 . + . ID=Physo139026.5;Parent=Physo139026;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_69 . exon 163342 163355 . + . ID=Physo139026.6;Parent=Physo139026;constitutive=1;ensembl_phase=1;rank=6 scaffold_69 ensembl protein_coding_gene 166245 166757 . - . ID=Physo139027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690036;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 166245 166757 . - . ID=Physo139027;Parent=Physo139027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 166245 166757 . - 0 ID=Physo139027;Parent=Physo139027;rank=1 scaffold_69 . exon 166245 166757 . - . ID=Physo139027.1;Parent=Physo139027;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 167252 169624 . + . ID=Physo139028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690037;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 167252 169624 . + . ID=Physo139028;Parent=Physo139028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 167252 167887 . + 0 ID=Physo139028;Parent=Physo139028;rank=1 scaffold_69 . exon 167252 167887 . + . ID=Physo139028.1;Parent=Physo139028;constitutive=1;rank=1 scaffold_69 . CDS 167922 168505 . + 0 ID=Physo139028;Parent=Physo139028;rank=2 scaffold_69 . exon 167922 168505 . + . ID=Physo139028.2;Parent=Physo139028;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_69 . CDS 168530 168762 . + 0 ID=Physo139028;Parent=Physo139028;rank=3 scaffold_69 . exon 168530 168762 . + . ID=Physo139028.3;Parent=Physo139028;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_69 . CDS 168810 169624 . + 0 ID=Physo139028;Parent=Physo139028;rank=4 scaffold_69 . exon 168810 169624 . + . ID=Physo139028.4;Parent=Physo139028;constitutive=1;ensembl_phase=1;rank=4 scaffold_69 ensembl protein_coding_gene 170462 172012 . - . ID=Physo139029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690038;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 170462 172012 . - . ID=Physo139029;Parent=Physo139029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 170462 170683 . - 0 ID=Physo139029;Parent=Physo139029;rank=4 scaffold_69 . exon 170462 170683 . - . ID=Physo139029.4;Parent=Physo139029;constitutive=1;rank=4 scaffold_69 . CDS 170733 170745 . - 0 ID=Physo139029;Parent=Physo139029;rank=3 scaffold_69 . exon 170733 170745 . - . ID=Physo139029.3;Parent=Physo139029;constitutive=1;ensembl_phase=2;rank=3 scaffold_69 . CDS 170845 171294 . - 0 ID=Physo139029;Parent=Physo139029;rank=2 scaffold_69 . exon 170845 171294 . - . ID=Physo139029.2;Parent=Physo139029;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_69 . CDS 171354 172012 . - 0 ID=Physo139029;Parent=Physo139029;rank=1 scaffold_69 . exon 171354 172012 . - . ID=Physo139029.1;Parent=Physo139029;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . biological_region 181477 181483 0.999 - . logic_name=eponine scaffold_69 . repeat_region 182392 182399 . ? . description=dust scaffold_69 . repeat_region 183887 183917 . ? . description=trf scaffold_69 . biological_region 184758 184761 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 185943 190099 . - . ID=Physo139032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690041;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 185943 190099 . - . ID=Physo139032;Parent=Physo139032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 185943 186236 . - 0 ID=Physo139032;Parent=Physo139032;rank=4 scaffold_69 . exon 185943 186236 . - . ID=Physo139032.4;Parent=Physo139032;constitutive=1;rank=4 scaffold_69 . CDS 186311 187083 . - 0 ID=Physo139032;Parent=Physo139032;rank=3 scaffold_69 . exon 186311 187083 . - . ID=Physo139032.3;Parent=Physo139032;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 187107 187699 . - 0 ID=Physo139032;Parent=Physo139032;rank=2 scaffold_69 . exon 187107 187699 . - . ID=Physo139032.2;Parent=Physo139032;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 187797 190099 . - 0 ID=Physo139032;Parent=Physo139032;rank=1 scaffold_69 . exon 187797 190099 . - . ID=Physo139032.1;Parent=Physo139032;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 181039 182314 . + . ID=Physo157911;biotype=protein_coding;external_name=C_scaffold_69000006;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 181039 182314 . + . ID=Physo157911;Parent=Physo157911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 181039 181076 . + 0 ID=Physo157911;Parent=Physo157911;rank=1 scaffold_69 . exon 181039 181076 . + . ID=Physo157911.1;Parent=Physo157911;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 181498 181731 . + 0 ID=Physo157911;Parent=Physo157911;rank=2 scaffold_69 . exon 181498 181731 . + . ID=Physo157911.2;Parent=Physo157911;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_69 . CDS 181827 181928 . + 0 ID=Physo157911;Parent=Physo157911;rank=3 scaffold_69 . exon 181827 181928 . + . ID=Physo157911.3;Parent=Physo157911;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_69 . CDS 182024 182276 . + 0 ID=Physo157911;Parent=Physo157911;rank=4 scaffold_69 . exon 182024 182276 . + . ID=Physo157911.4;Parent=Physo157911;constitutive=1;ensembl_phase=2;rank=4 scaffold_69 . CDS 182306 182314 . + 0 ID=Physo157911;Parent=Physo157911;rank=5 scaffold_69 . exon 182306 182314 . + . ID=Physo157911.5;Parent=Physo157911;constitutive=1;rank=5 scaffold_69 ensembl protein_coding_gene 182630 184840 . - . ID=Physo157914;biotype=protein_coding;external_name=C_scaffold_69000009;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 182630 184840 . - . ID=Physo157914;Parent=Physo157914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 182630 182730 . - 0 ID=Physo157914;Parent=Physo157914;rank=10 scaffold_69 . exon 182630 182730 . - . ID=Physo157914.10;Parent=Physo157914;constitutive=1;ensembl_phase=1;rank=10 scaffold_69 . CDS 182806 182935 . - 0 ID=Physo157914;Parent=Physo157914;rank=9 scaffold_69 . exon 182806 182935 . - . ID=Physo157914.9;Parent=Physo157914;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_69 . CDS 183006 183369 . - 0 ID=Physo157914;Parent=Physo157914;rank=8 scaffold_69 . exon 183006 183369 . - . ID=Physo157914.8;Parent=Physo157914;constitutive=1;ensembl_phase=2;rank=8 scaffold_69 . CDS 183459 183596 . - 0 ID=Physo157914;Parent=Physo157914;rank=7 scaffold_69 . exon 183459 183596 . - . ID=Physo157914.7;Parent=Physo157914;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_69 . CDS 183673 183995 . - 0 ID=Physo157914;Parent=Physo157914;rank=6 scaffold_69 . exon 183673 183995 . - . ID=Physo157914.6;Parent=Physo157914;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_69 . CDS 184084 184140 . - 0 ID=Physo157914;Parent=Physo157914;rank=5 scaffold_69 . exon 184084 184140 . - . ID=Physo157914.5;Parent=Physo157914;constitutive=1;rank=5 scaffold_69 . CDS 184219 184287 . - 0 ID=Physo157914;Parent=Physo157914;rank=4 scaffold_69 . exon 184219 184287 . - . ID=Physo157914.4;Parent=Physo157914;constitutive=1;rank=4 scaffold_69 . CDS 184365 184421 . - 0 ID=Physo157914;Parent=Physo157914;rank=3 scaffold_69 . exon 184365 184421 . - . ID=Physo157914.3;Parent=Physo157914;constitutive=1;rank=3 scaffold_69 . CDS 184492 184711 . - 0 ID=Physo157914;Parent=Physo157914;rank=2 scaffold_69 . exon 184492 184711 . - . ID=Physo157914.2;Parent=Physo157914;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 184800 184840 . - 0 ID=Physo157914;Parent=Physo157914;rank=1 scaffold_69 . exon 184800 184840 . - . ID=Physo157914.1;Parent=Physo157914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 195397 196221 . - . ID=Physo139033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690042;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 195397 196221 . - . ID=Physo139033;Parent=Physo139033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 195397 196221 . - 0 ID=Physo139033;Parent=Physo139033;rank=1 scaffold_69 . exon 195397 196221 . - . ID=Physo139033.1;Parent=Physo139033;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 196984 197851 . + . ID=Physo139034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690043;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 196984 197851 . + . ID=Physo139034;Parent=Physo139034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . exon 196984 197299 . + . ID=Physo139034.1;Parent=Physo139034;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_69 . CDS 196990 197299 . + 0 ID=Physo139034;Parent=Physo139034;rank=1 scaffold_69 . CDS 197547 197851 . + 0 ID=Physo139034;Parent=Physo139034;rank=2 scaffold_69 . exon 197547 197851 . + . ID=Physo139034.2;Parent=Physo139034;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . repeat_region 202546 202553 . ? . description=dust scaffold_69 . biological_region 202575 202582 0.999 + . logic_name=eponine scaffold_69 . biological_region 202614 202614 0.999 + . logic_name=eponine scaffold_69 . biological_region 205606 205608 0.999 - . logic_name=eponine scaffold_69 . biological_region 207045 207046 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 202568 203464 . + . ID=Physo139035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690044;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 202568 203464 . + . ID=Physo139035;Parent=Physo139035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 202568 203464 . + 0 ID=Physo139035;Parent=Physo139035;rank=1 scaffold_69 . exon 202568 203464 . + . ID=Physo139035.1;Parent=Physo139035;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 208613 211035 . - . ID=Physo139036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690045;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 208613 211035 . - . ID=Physo139036;Parent=Physo139036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 208613 209374 . - 0 ID=Physo139036;Parent=Physo139036;rank=3 scaffold_69 . exon 208613 209374 . - . ID=Physo139036.3;Parent=Physo139036;constitutive=1;rank=3 scaffold_69 . CDS 209423 209689 . - 0 ID=Physo139036;Parent=Physo139036;rank=2 scaffold_69 . CDS 209749 211035 . - 0 ID=Physo139036;Parent=Physo139036;rank=1 scaffold_69 . repeat_region 218249 218287 . ? . description=trf scaffold_69 . repeat_region 218249 218287 . ? . description=trf scaffold_69 . exon 209423 209689 . - . ID=Physo139036.2;Parent=Physo139036;constitutive=1;rank=2 scaffold_69 . exon 209749 211035 . - . ID=Physo139036.1;Parent=Physo139036;constitutive=1;rank=1 scaffold_69 . repeat_region 229790 229835 . ? . description=trf scaffold_69 . repeat_region 231481 231497 . ? . description=dust scaffold_69 . biological_region 243399 243400 0.999 + . logic_name=eponine scaffold_69 . biological_region 247846 247850 0.999 + . logic_name=eponine scaffold_69 . repeat_region 250122 250129 . ? . description=dust scaffold_69 . repeat_region 254258 254272 . ? . description=dust scaffold_69 . repeat_region 254288 254297 . ? . description=dust scaffold_69 . repeat_region 256219 256247 . ? . description=trf scaffold_69 . repeat_region 258514 260834 . - . description=GypsyPi-1c_I-int scaffold_69 ensembl protein_coding_gene 249493 250122 . + . ID=Physo139037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690046;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 249493 250122 . + . ID=Physo139037;Parent=Physo139037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 249493 250122 . + 0 ID=Physo139037;Parent=Physo139037;rank=1 scaffold_69 . exon 249493 250122 . + . ID=Physo139037.1;Parent=Physo139037;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 250695 253932 . - . ID=Physo139038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690047;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 250695 253932 . - . ID=Physo139038;Parent=Physo139038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 250695 250724 . - 0 ID=Physo139038;Parent=Physo139038;rank=3 scaffold_69 . exon 250695 250724 . - . ID=Physo139038.3;Parent=Physo139038;constitutive=1;rank=3 scaffold_69 . CDS 250750 252925 . - 0 ID=Physo139038;Parent=Physo139038;rank=2 scaffold_69 . exon 250750 252925 . - . ID=Physo139038.2;Parent=Physo139038;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 252977 253932 . - 0 ID=Physo139038;Parent=Physo139038;rank=1 scaffold_69 . exon 252977 253932 . - . ID=Physo139038.1;Parent=Physo139038;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 ensembl protein_coding_gene 257344 263374 . - . ID=Physo139039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690048;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 257344 263374 . - . ID=Physo139039;Parent=Physo139039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 257344 257754 . - 0 ID=Physo139039;Parent=Physo139039;rank=6 scaffold_69 . exon 257344 257754 . - . ID=Physo139039.6;Parent=Physo139039;constitutive=1;rank=6 scaffold_69 . CDS 257871 261586 . - 0 ID=Physo139039;Parent=Physo139039;rank=5 scaffold_69 . exon 257871 261586 . - . ID=Physo139039.5;Parent=Physo139039;constitutive=1;ensembl_phase=1;rank=5 scaffold_69 . CDS 261620 261996 . - 0 ID=Physo139039;Parent=Physo139039;rank=4 scaffold_69 . CDS 262070 262506 . - 0 ID=Physo139039;Parent=Physo139039;rank=3 scaffold_69 . CDS 262560 263141 . - 0 ID=Physo139039;Parent=Physo139039;rank=2 scaffold_69 . CDS 263168 263374 . - 0 ID=Physo139039;Parent=Physo139039;rank=1 scaffold_69 . biological_region 260836 260836 0.999 - . logic_name=eponine scaffold_69 . biological_region 260860 260861 0.999 + . logic_name=eponine scaffold_69 . biological_region 260895 260896 0.999 + . logic_name=eponine scaffold_69 . biological_region 260943 260946 0.999 - . logic_name=eponine scaffold_69 . biological_region 261394 261397 0.999 - . logic_name=eponine scaffold_69 . biological_region 262122 262123 0.999 - . logic_name=eponine scaffold_69 . biological_region 262397 262400 0.999 - . logic_name=eponine scaffold_69 . biological_region 262450 262457 0.999 + . logic_name=eponine scaffold_69 . biological_region 262520 262521 0.999 - . logic_name=eponine scaffold_69 . biological_region 263042 263045 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 267202 267588 . - . ID=Physo119941;biotype=protein_coding;external_name=estExt_Genewise1.C_690050;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 267202 267588 . - . ID=Physo119941;Parent=Physo119941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 267202 267525 . - 0 ID=Physo119941;Parent=Physo119941;rank=1 scaffold_69 . exon 267202 267588 . - . ID=Physo119941.1;Parent=Physo119941;constitutive=1;ensembl_phase=-1;rank=1 scaffold_69 . exon 261620 261996 . - . ID=Physo139039.4;Parent=Physo139039;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_69 . exon 262070 262506 . - . ID=Physo139039.3;Parent=Physo139039;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_69 . exon 262560 263141 . - . ID=Physo139039.2;Parent=Physo139039;constitutive=1;rank=2 scaffold_69 . exon 263168 263374 . - . ID=Physo139039.1;Parent=Physo139039;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 265898 266764 . - . ID=Physo139040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690049;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 265898 266764 . - . ID=Physo139040;Parent=Physo139040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . exon 265898 266561 . - . ID=Physo139040.2;Parent=Physo139040;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_69 . CDS 265988 266561 . - 0 ID=Physo139040;Parent=Physo139040;rank=2 scaffold_69 . CDS 266718 266764 . - 0 ID=Physo139040;Parent=Physo139040;rank=1 scaffold_69 . exon 266718 266764 . - . ID=Physo139040.1;Parent=Physo139040;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . repeat_region 269884 269919 . ? . description=dust scaffold_69 ensembl protein_coding_gene 270036 275405 . - . ID=Physo139042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690051;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 270036 275405 . - . ID=Physo139042;Parent=Physo139042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . exon 270036 275405 . - . ID=Physo139042.1;Parent=Physo139042;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_69 . CDS 270141 275405 . - 0 ID=Physo139042;Parent=Physo139042;rank=1 scaffold_69 ensembl protein_coding_gene 276495 278323 . + . ID=Physo139043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690052;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 276495 278323 . + . ID=Physo139043;Parent=Physo139043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 276495 278005 . + 0 ID=Physo139043;Parent=Physo139043;rank=1 scaffold_69 . exon 276495 278005 . + . ID=Physo139043.1;Parent=Physo139043;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 278032 278323 . + 0 ID=Physo139043;Parent=Physo139043;rank=2 scaffold_69 . exon 278032 278323 . + . ID=Physo139043.2;Parent=Physo139043;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . biological_region 281141 281141 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 281909 286118 . - . ID=Physo139044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690053;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 281909 286118 . - . ID=Physo139044;Parent=Physo139044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 281909 282298 . - 0 ID=Physo139044;Parent=Physo139044;rank=12 scaffold_69 . exon 281909 282298 . - . ID=Physo139044.12;Parent=Physo139044;constitutive=1;rank=12 scaffold_69 . CDS 282345 282358 . - 0 ID=Physo139044;Parent=Physo139044;rank=11 scaffold_69 . exon 282345 282358 . - . ID=Physo139044.11;Parent=Physo139044;constitutive=1;ensembl_phase=1;rank=11 scaffold_69 . CDS 282384 283011 . - 0 ID=Physo139044;Parent=Physo139044;rank=10 scaffold_69 . exon 282384 283011 . - . ID=Physo139044.10;Parent=Physo139044;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_69 . CDS 283107 283140 . - 0 ID=Physo139044;Parent=Physo139044;rank=9 scaffold_69 . exon 283107 283140 . - . ID=Physo139044.9;Parent=Physo139044;constitutive=1;ensembl_phase=2;rank=9 scaffold_69 . CDS 283468 283571 . - 0 ID=Physo139044;Parent=Physo139044;rank=8 scaffold_69 . exon 283468 283571 . - . ID=Physo139044.8;Parent=Physo139044;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_69 . CDS 283740 284315 . - 0 ID=Physo139044;Parent=Physo139044;rank=7 scaffold_69 . exon 283740 284315 . - . ID=Physo139044.7;Parent=Physo139044;constitutive=1;rank=7 scaffold_69 . CDS 284352 284557 . - 0 ID=Physo139044;Parent=Physo139044;rank=6 scaffold_69 . exon 284352 284557 . - . ID=Physo139044.6;Parent=Physo139044;constitutive=1;ensembl_phase=1;rank=6 scaffold_69 . CDS 284642 284834 . - 0 ID=Physo139044;Parent=Physo139044;rank=5 scaffold_69 . exon 284642 284834 . - . ID=Physo139044.5;Parent=Physo139044;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_69 . CDS 284983 285244 . - 0 ID=Physo139044;Parent=Physo139044;rank=4 scaffold_69 . exon 284983 285244 . - . ID=Physo139044.4;Parent=Physo139044;constitutive=1;ensembl_phase=2;rank=4 scaffold_69 . CDS 285420 285513 . - 0 ID=Physo139044;Parent=Physo139044;rank=3 scaffold_69 . exon 285420 285513 . - . ID=Physo139044.3;Parent=Physo139044;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_69 . CDS 285554 285610 . - 0 ID=Physo139044;Parent=Physo139044;rank=2 scaffold_69 . exon 285554 285610 . - . ID=Physo139044.2;Parent=Physo139044;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 285656 286118 . - 0 ID=Physo139044;Parent=Physo139044;rank=1 scaffold_69 . exon 285656 286118 . - . ID=Physo139044.1;Parent=Physo139044;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 ensembl protein_coding_gene 288493 289440 . - . ID=Physo139045;biotype=protein_coding;description=PsAvh168 [Source:UniProtKB/TrEMBL%3BAcc:E0W5D2];external_name=estExt_fgenesh1_pg.C_690054;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 288493 289440 . - . ID=Physo139045;Parent=Physo139045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 288493 289440 . - 0 ID=Physo139045;Parent=Physo139045;rank=1 scaffold_69 . exon 288493 289440 . - . ID=Physo139045.1;Parent=Physo139045;constitutive=1;rank=1 scaffold_69 . repeat_region 290302 290355 . ? . description=trf scaffold_69 . repeat_region 298209 298298 . ? . description=trf scaffold_69 . repeat_region 298213 298298 . ? . description=trf scaffold_69 . repeat_region 298233 298298 . ? . description=trf scaffold_69 ensembl protein_coding_gene 296586 297047 . + . ID=Physo119897;biotype=protein_coding;external_name=estExt_Genewise1.C_690006;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 296586 297047 . + . ID=Physo119897;Parent=Physo119897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 296586 296741 . + 0 ID=Physo119897;Parent=Physo119897;rank=1 scaffold_69 . exon 296586 296741 . + . ID=Physo119897.1;Parent=Physo119897;constitutive=1;rank=1 scaffold_69 . CDS 296916 297047 . + 0 ID=Physo119897;Parent=Physo119897;rank=2 scaffold_69 . exon 296916 297047 . + . ID=Physo119897.2;Parent=Physo119897;constitutive=1;rank=2 scaffold_69 ensembl protein_coding_gene 291653 293766 . - . ID=Physo139046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690055;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 291653 293766 . - . ID=Physo139046;Parent=Physo139046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 291653 292960 . - 0 ID=Physo139046;Parent=Physo139046;rank=2 scaffold_69 . exon 291653 292960 . - . ID=Physo139046.2;Parent=Physo139046;constitutive=1;rank=2 scaffold_69 . CDS 293026 293766 . - 0 ID=Physo139046;Parent=Physo139046;rank=1 scaffold_69 . exon 293026 293766 . - . ID=Physo139046.1;Parent=Physo139046;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 294570 296181 . - . ID=Physo139047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690056;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 294570 296181 . - . ID=Physo139047;Parent=Physo139047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 294570 295429 . - 0 ID=Physo139047;Parent=Physo139047;rank=2 scaffold_69 . exon 294570 295429 . - . ID=Physo139047.2;Parent=Physo139047;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 295488 296181 . - 0 ID=Physo139047;Parent=Physo139047;rank=1 scaffold_69 . exon 295488 296181 . - . ID=Physo139047.1;Parent=Physo139047;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . repeat_region 300616 300802 . ? . description=dust scaffold_69 . biological_region 301335 301338 0.999 + . logic_name=eponine scaffold_69 . biological_region 301429 301431 0.999 - . logic_name=eponine scaffold_69 . repeat_region 301596 301615 . ? . description=dust scaffold_69 . biological_region 305425 305430 0.999 - . logic_name=eponine scaffold_69 . biological_region 308843 308844 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 305351 307453 . + . ID=Physo139049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690058;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 305351 307453 . + . ID=Physo139049;Parent=Physo139049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 305351 305362 . + 0 ID=Physo139049;Parent=Physo139049;rank=1 scaffold_69 . exon 305351 305362 . + . ID=Physo139049.1;Parent=Physo139049;constitutive=1;rank=1 scaffold_69 . CDS 305462 306829 . + 0 ID=Physo139049;Parent=Physo139049;rank=2 scaffold_69 . exon 305462 306829 . + . ID=Physo139049.2;Parent=Physo139049;constitutive=1;rank=2 scaffold_69 . CDS 306850 307149 . + 0 ID=Physo139049;Parent=Physo139049;rank=3 scaffold_69 . exon 306850 307149 . + . ID=Physo139049.3;Parent=Physo139049;constitutive=1;rank=3 scaffold_69 . CDS 307235 307453 . + 0 ID=Physo139049;Parent=Physo139049;rank=4 scaffold_69 . exon 307235 307453 . + . ID=Physo139049.4;Parent=Physo139049;constitutive=1;rank=4 scaffold_69 ensembl protein_coding_gene 308768 311442 . + . ID=Physo139051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690060;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 308768 311442 . + . ID=Physo139051;Parent=Physo139051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 308768 308936 . + 0 ID=Physo139051;Parent=Physo139051;rank=1 scaffold_69 . exon 308768 308936 . + . ID=Physo139051.1;Parent=Physo139051;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 309013 309840 . + 0 ID=Physo139051;Parent=Physo139051;rank=2 scaffold_69 . exon 309013 309840 . + . ID=Physo139051.2;Parent=Physo139051;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 310311 310328 . + 0 ID=Physo139051;Parent=Physo139051;rank=3 scaffold_69 . CDS 310547 311442 . + 0 ID=Physo139051;Parent=Physo139051;rank=4 scaffold_69 ensembl protein_coding_gene 307589 308381 . - . ID=Physo157916;biotype=protein_coding;external_name=C_scaffold_69000011;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 307589 308381 . - . ID=Physo157916;Parent=Physo157916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 307589 307722 . - 0 ID=Physo157916;Parent=Physo157916;rank=4 scaffold_69 . exon 307589 307722 . - . ID=Physo157916.4;Parent=Physo157916;constitutive=1;ensembl_phase=1;rank=4 scaffold_69 . CDS 307793 307894 . - 0 ID=Physo157916;Parent=Physo157916;rank=3 scaffold_69 . exon 307793 307894 . - . ID=Physo157916.3;Parent=Physo157916;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 308122 308296 . - 0 ID=Physo157916;Parent=Physo157916;rank=2 scaffold_69 . exon 308122 308296 . - . ID=Physo157916.2;Parent=Physo157916;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_69 . CDS 308316 308381 . - 0 ID=Physo157916;Parent=Physo157916;rank=1 scaffold_69 . exon 308316 308381 . - . ID=Physo157916.1;Parent=Physo157916;constitutive=1;rank=1 scaffold_69 . exon 310311 310328 . + . ID=Physo139051.3;Parent=Physo139051;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_69 . exon 310547 311442 . + . ID=Physo139051.4;Parent=Physo139051;constitutive=1;ensembl_phase=1;rank=4 scaffold_69 ensembl protein_coding_gene 311869 315407 . - . ID=Physo139052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690061;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 311869 315407 . - . ID=Physo139052;Parent=Physo139052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 311869 312486 . - 0 ID=Physo139052;Parent=Physo139052;rank=3 scaffold_69 . exon 311869 312486 . - . ID=Physo139052.3;Parent=Physo139052;constitutive=1;rank=3 scaffold_69 . CDS 312608 313941 . - 0 ID=Physo139052;Parent=Physo139052;rank=2 scaffold_69 . exon 312608 313941 . - . ID=Physo139052.2;Parent=Physo139052;constitutive=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 314145 315381 . - 0 ID=Physo139052;Parent=Physo139052;rank=1 scaffold_69 . exon 314145 315407 . - . ID=Physo139052.1;Parent=Physo139052;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_69 ensembl protein_coding_gene 315635 316093 . + . ID=Physo139053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690062;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 315635 316093 . + . ID=Physo139053;Parent=Physo139053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 315635 315721 . + 0 ID=Physo139053;Parent=Physo139053;rank=1 scaffold_69 . exon 315635 315721 . + . ID=Physo139053.1;Parent=Physo139053;constitutive=1;rank=1 scaffold_69 . CDS 315794 316093 . + 0 ID=Physo139053;Parent=Physo139053;rank=2 scaffold_69 . exon 315794 316093 . + . ID=Physo139053.2;Parent=Physo139053;constitutive=1;rank=2 scaffold_69 ensembl protein_coding_gene 317956 318941 . + . ID=Physo139054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690063;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 317956 318941 . + . ID=Physo139054;Parent=Physo139054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 317956 318854 . + 0 ID=Physo139054;Parent=Physo139054;rank=1 scaffold_69 . exon 317956 318854 . + . ID=Physo139054.1;Parent=Physo139054;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 318932 318941 . + 0 ID=Physo139054;Parent=Physo139054;rank=2 scaffold_69 . exon 318932 318941 . + . ID=Physo139054.2;Parent=Physo139054;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . biological_region 321107 321107 0.999 - . logic_name=eponine scaffold_69 . biological_region 322086 322088 0.999 + . logic_name=eponine scaffold_69 . repeat_region 324025 324059 . ? . description=dust scaffold_69 . biological_region 324314 324319 0.999 + . logic_name=eponine scaffold_69 . biological_region 324473 324476 0.999 - . logic_name=eponine scaffold_69 . biological_region 327048 327048 0.999 - . logic_name=eponine scaffold_69 . biological_region 327334 327341 0.999 + . logic_name=eponine scaffold_69 . biological_region 328187 328192 0.999 + . logic_name=eponine scaffold_69 ensembl protein_coding_gene 327984 328742 . - . ID=Physo119902;biotype=protein_coding;external_name=estExt_Genewise1.C_690011;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 327984 328742 . - . ID=Physo119902;Parent=Physo119902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 327984 328742 . - 0 ID=Physo119902;Parent=Physo119902;rank=1 scaffold_69 . exon 327984 328742 . - . ID=Physo119902.1;Parent=Physo119902;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 323284 324235 . - . ID=Physo139055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690064;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 323284 324235 . - . ID=Physo139055;Parent=Physo139055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 323284 323541 . - 0 ID=Physo139055;Parent=Physo139055;rank=3 scaffold_69 . exon 323284 323541 . - . ID=Physo139055.3;Parent=Physo139055;constitutive=1;rank=3 scaffold_69 . CDS 323604 323909 . - 0 ID=Physo139055;Parent=Physo139055;rank=2 scaffold_69 . exon 323604 323909 . - . ID=Physo139055.2;Parent=Physo139055;constitutive=1;rank=2 scaffold_69 . CDS 323933 324235 . - 0 ID=Physo139055;Parent=Physo139055;rank=1 scaffold_69 . exon 323933 324235 . - . ID=Physo139055.1;Parent=Physo139055;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 336937 338121 . + . ID=Physo139057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690066;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 336937 338121 . + . ID=Physo139057;Parent=Physo139057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 336937 338121 . + 0 ID=Physo139057;Parent=Physo139057;rank=1 scaffold_69 . exon 336937 338121 . + . ID=Physo139057.1;Parent=Physo139057;constitutive=1;rank=1 scaffold_69 . repeat_region 339773 339783 . ? . description=dust scaffold_69 . biological_region 343033 343042 0.999 + . logic_name=eponine scaffold_69 . biological_region 343396 343400 0.999 + . logic_name=eponine scaffold_69 . biological_region 343466 343469 0.999 + . logic_name=eponine scaffold_69 . repeat_region 344063 346450 . + . description=GypsyPi-1c_I-int scaffold_69 . biological_region 345119 345121 0.999 - . logic_name=eponine scaffold_69 . biological_region 345774 345775 0.999 - . logic_name=eponine scaffold_69 . repeat_region 346682 346960 . + . description=GypsyPi-1c_I-int scaffold_69 . biological_region 347116 347119 0.999 - . logic_name=eponine scaffold_69 . biological_region 347466 347468 0.999 - . logic_name=eponine scaffold_69 . biological_region 347571 347576 0.999 - . logic_name=eponine scaffold_69 . biological_region 348124 348129 0.999 + . logic_name=eponine scaffold_69 . biological_region 348466 348469 0.999 + . logic_name=eponine scaffold_69 . biological_region 348651 348655 0.999 - . logic_name=eponine scaffold_69 . repeat_region 348730 350448 . - . description=GypsyPi-1c_I-int scaffold_69 ensembl protein_coding_gene 340608 340994 . + . ID=Physo139058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690067;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 340608 340994 . + . ID=Physo139058;Parent=Physo139058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 340608 340994 . + 0 ID=Physo139058;Parent=Physo139058;rank=1 scaffold_69 . exon 340608 340994 . + . ID=Physo139058.1;Parent=Physo139058;constitutive=1;rank=1 scaffold_69 ensembl protein_coding_gene 343694 346710 . + . ID=Physo139059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690068;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 343694 346710 . + . ID=Physo139059;Parent=Physo139059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 343694 344042 . + 0 ID=Physo139059;Parent=Physo139059;rank=1 scaffold_69 . exon 343694 344042 . + . ID=Physo139059.1;Parent=Physo139059;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . CDS 344089 344323 . + 0 ID=Physo139059;Parent=Physo139059;rank=2 scaffold_69 . exon 344089 344323 . + . ID=Physo139059.2;Parent=Physo139059;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_69 . CDS 344420 344901 . + 0 ID=Physo139059;Parent=Physo139059;rank=3 scaffold_69 . exon 344420 344901 . + . ID=Physo139059.3;Parent=Physo139059;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_69 . CDS 345006 345219 . + 0 ID=Physo139059;Parent=Physo139059;rank=4 scaffold_69 . exon 345006 345219 . + . ID=Physo139059.4;Parent=Physo139059;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_69 . CDS 345282 345334 . + 0 ID=Physo139059;Parent=Physo139059;rank=5 scaffold_69 . exon 345282 345334 . + . ID=Physo139059.5;Parent=Physo139059;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_69 . CDS 345360 345767 . + 0 ID=Physo139059;Parent=Physo139059;rank=6 scaffold_69 . exon 345360 345767 . + . ID=Physo139059.6;Parent=Physo139059;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_69 . CDS 345890 346710 . + 0 ID=Physo139059;Parent=Physo139059;rank=7 scaffold_69 . exon 345890 346710 . + . ID=Physo139059.7;Parent=Physo139059;constitutive=1;ensembl_phase=1;rank=7 scaffold_69 ensembl protein_coding_gene 348286 350358 . + . ID=Physo139060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690069;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 348286 350358 . + . ID=Physo139060;Parent=Physo139060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 348286 348299 . + 0 ID=Physo139060;Parent=Physo139060;rank=1 scaffold_69 . exon 348286 348299 . + . ID=Physo139060.1;Parent=Physo139060;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 348432 348787 . + 0 ID=Physo139060;Parent=Physo139060;rank=2 scaffold_69 . exon 348432 348787 . + . ID=Physo139060.2;Parent=Physo139060;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 348868 349386 . + 0 ID=Physo139060;Parent=Physo139060;rank=3 scaffold_69 . exon 348868 349386 . + . ID=Physo139060.3;Parent=Physo139060;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 349493 350358 . + 0 ID=Physo139060;Parent=Physo139060;rank=4 scaffold_69 . repeat_region 353398 353563 . ? . description=trf scaffold_69 . repeat_region 355380 355683 . - . description=GypsyPi-1c_LTR scaffold_69 . exon 349493 350358 . + . ID=Physo139060.4;Parent=Physo139060;constitutive=1;ensembl_phase=1;rank=4 scaffold_69 ensembl protein_coding_gene 350658 355292 . - . ID=Physo139061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690070;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 350658 355292 . - . ID=Physo139061;Parent=Physo139061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 350658 351055 . - 0 ID=Physo139061;Parent=Physo139061;rank=9 scaffold_69 . exon 350658 351055 . - . ID=Physo139061.9;Parent=Physo139061;constitutive=1;ensembl_phase=1;rank=9 scaffold_69 . CDS 351180 351215 . - 0 ID=Physo139061;Parent=Physo139061;rank=8 scaffold_69 . exon 351180 351215 . - . ID=Physo139061.8;Parent=Physo139061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_69 . CDS 351245 351949 . - 0 ID=Physo139061;Parent=Physo139061;rank=7 scaffold_69 . exon 351245 351949 . - . ID=Physo139061.7;Parent=Physo139061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_69 . CDS 352006 352783 . - 0 ID=Physo139061;Parent=Physo139061;rank=6 scaffold_69 . exon 352006 352783 . - . ID=Physo139061.6;Parent=Physo139061;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_69 . CDS 352817 353264 . - 0 ID=Physo139061;Parent=Physo139061;rank=5 scaffold_69 . exon 352817 353264 . - . ID=Physo139061.5;Parent=Physo139061;constitutive=1;ensembl_phase=2;rank=5 scaffold_69 . CDS 353308 353596 . - 0 ID=Physo139061;Parent=Physo139061;rank=4 scaffold_69 . exon 353308 353596 . - . ID=Physo139061.4;Parent=Physo139061;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_69 . CDS 353635 353939 . - 0 ID=Physo139061;Parent=Physo139061;rank=3 scaffold_69 . exon 353635 353939 . - . ID=Physo139061.3;Parent=Physo139061;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_69 . CDS 354009 354216 . - 0 ID=Physo139061;Parent=Physo139061;rank=2 scaffold_69 . exon 354009 354216 . - . ID=Physo139061.2;Parent=Physo139061;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_69 . CDS 354422 355292 . - 0 ID=Physo139061;Parent=Physo139061;rank=1 scaffold_69 . exon 354422 355292 . - . ID=Physo139061.1;Parent=Physo139061;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_69 . repeat_region 358637 361985 . ? . description=dust scaffold_69 . repeat_region 363588 363637 . ? . description=dust scaffold_69 . biological_region 364248 364249 0.999 - . logic_name=eponine scaffold_69 . biological_region 365987 365992 0.999 - . logic_name=eponine scaffold_69 . repeat_region 366336 368002 . ? . description=dust scaffold_69 . biological_region 368034 368035 0.999 + . logic_name=eponine scaffold_69 . biological_region 368462 368463 0.999 - . logic_name=eponine scaffold_69 . repeat_region 368485 368492 . ? . description=dust scaffold_69 ensembl protein_coding_gene 363759 364935 . + . ID=Physo139062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690071;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 363759 364935 . + . ID=Physo139062;Parent=Physo139062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 363759 363877 . + 0 ID=Physo139062;Parent=Physo139062;rank=1 scaffold_69 . exon 363759 363877 . + . ID=Physo139062.1;Parent=Physo139062;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . CDS 364127 364242 . + 0 ID=Physo139062;Parent=Physo139062;rank=2 scaffold_69 . exon 364127 364242 . + . ID=Physo139062.2;Parent=Physo139062;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 364505 364935 . + 0 ID=Physo139062;Parent=Physo139062;rank=3 scaffold_69 . exon 364505 364935 . + . ID=Physo139062.3;Parent=Physo139062;constitutive=1;ensembl_phase=1;rank=3 scaffold_69 ensembl protein_coding_gene 365185 366153 . - . ID=Physo139063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690072;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 365185 366153 . - . ID=Physo139063;Parent=Physo139063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 365185 365440 . - 0 ID=Physo139063;Parent=Physo139063;rank=2 scaffold_69 . exon 365185 365440 . - . ID=Physo139063.2;Parent=Physo139063;constitutive=1;ensembl_phase=2;rank=2 scaffold_69 . CDS 365507 366153 . - 0 ID=Physo139063;Parent=Physo139063;rank=1 scaffold_69 . exon 365507 366153 . - . ID=Physo139063.1;Parent=Physo139063;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_69 . biological_region 381344 381348 0.999 + . logic_name=eponine scaffold_69 . biological_region 381419 381426 0.999 - . logic_name=eponine scaffold_69 . biological_region 381712 381712 0.999 + . logic_name=eponine scaffold_69 . repeat_region 382765 405340 . ? . description=dust scaffold_69 ensembl protein_coding_gene 380026 380775 . + . ID=Physo119906;biotype=protein_coding;external_name=estExt_Genewise1.C_690015;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 380026 380775 . + . ID=Physo119906;Parent=Physo119906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 380026 380775 . + 0 ID=Physo119906;Parent=Physo119906;rank=1 scaffold_69 . exon 380026 380775 . + . ID=Physo119906.1;Parent=Physo119906;constitutive=1;rank=1 scaffold_69 . repeat_region 382765 405340 . ? . description=dust scaffold_69 . repeat_region 406857 407969 . ? . description=dust scaffold_69 . repeat_region 408229 408237 . ? . description=dust scaffold_69 . biological_region 408499 408500 0.999 - . logic_name=eponine scaffold_69 ensembl protein_coding_gene 405884 406692 . - . ID=Physo139065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_690074;logic_name=jgi_physo1_1 scaffold_69 ensembl transcript 405884 406692 . - . ID=Physo139065;Parent=Physo139065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_69 . CDS 405884 406041 . - 0 ID=Physo139065;Parent=Physo139065;rank=4 scaffold_69 . exon 405884 406041 . - . ID=Physo139065.4;Parent=Physo139065;constitutive=1;ensembl_phase=1;rank=4 scaffold_69 . CDS 406107 406208 . - 0 ID=Physo139065;Parent=Physo139065;rank=3 scaffold_69 . exon 406107 406208 . - . ID=Physo139065.3;Parent=Physo139065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_69 . CDS 406273 406362 . - 0 ID=Physo139065;Parent=Physo139065;rank=2 scaffold_69 . exon 406273 406362 . - . ID=Physo139065.2;Parent=Physo139065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_69 . CDS 406431 406692 . - 0 ID=Physo139065;Parent=Physo139065;rank=1 scaffold_69 . exon 406431 406692 . - . ID=Physo139065.1;Parent=Physo139065;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_67 1 409817 scaffold_67 . repeat_region 1 765 . ? . description=trf scaffold_67 . repeat_region 832 869 . ? . description=trf scaffold_67 . repeat_region 3805 3846 . ? . description=trf scaffold_67 . biological_region 8646 8648 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 4314 4712 . - . ID=Physo138799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670001;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 4314 4712 . - . ID=Physo138799;Parent=Physo138799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 4314 4712 . - 0 ID=Physo138799;Parent=Physo138799;rank=1 scaffold_67 . exon 4314 4712 . - . ID=Physo138799.1;Parent=Physo138799;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 7721 10900 . - . ID=Physo138800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670002;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 7721 10900 . - . ID=Physo138800;Parent=Physo138800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 7721 10900 . - 0 ID=Physo138800;Parent=Physo138800;rank=1 scaffold_67 . exon 7721 10900 . - . ID=Physo138800.1;Parent=Physo138800;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 12124 12789 . + . ID=Physo138801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670003;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 12124 12789 . + . ID=Physo138801;Parent=Physo138801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 12124 12601 . + 0 ID=Physo138801;Parent=Physo138801;rank=1 scaffold_67 . exon 12124 12601 . + . ID=Physo138801.1;Parent=Physo138801;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 12668 12789 . + 0 ID=Physo138801;Parent=Physo138801;rank=2 scaffold_67 . exon 12668 12789 . + . ID=Physo138801.2;Parent=Physo138801;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 ensembl protein_coding_gene 13421 15261 . - . ID=Physo138802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670004;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 13421 15261 . - . ID=Physo138802;Parent=Physo138802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 13421 13486 . - 0 ID=Physo138802;Parent=Physo138802;rank=7 scaffold_67 . exon 13421 13486 . - . ID=Physo138802.7;Parent=Physo138802;constitutive=1;rank=7 scaffold_67 . CDS 13556 13626 . - 0 ID=Physo138802;Parent=Physo138802;rank=6 scaffold_67 . exon 13556 13626 . - . ID=Physo138802.6;Parent=Physo138802;constitutive=1;ensembl_phase=1;rank=6 scaffold_67 . CDS 13715 13804 . - 0 ID=Physo138802;Parent=Physo138802;rank=5 scaffold_67 . exon 13715 13804 . - . ID=Physo138802.5;Parent=Physo138802;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_67 . CDS 13878 13986 . - 0 ID=Physo138802;Parent=Physo138802;rank=4 scaffold_67 . exon 13878 13986 . - . ID=Physo138802.4;Parent=Physo138802;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_67 . CDS 14057 14466 . - 0 ID=Physo138802;Parent=Physo138802;rank=3 scaffold_67 . exon 14057 14466 . - . ID=Physo138802.3;Parent=Physo138802;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 14544 14637 . - 0 ID=Physo138802;Parent=Physo138802;rank=2 scaffold_67 . exon 14544 14637 . - . ID=Physo138802.2;Parent=Physo138802;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_67 . CDS 14722 15261 . - 0 ID=Physo138802;Parent=Physo138802;rank=1 scaffold_67 . exon 14722 15261 . - . ID=Physo138802.1;Parent=Physo138802;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 15841 16770 . + . ID=Physo138803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670005;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 15841 16770 . + . ID=Physo138803;Parent=Physo138803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 15841 16302 . + 0 ID=Physo138803;Parent=Physo138803;rank=1 scaffold_67 . exon 15841 16302 . + . ID=Physo138803.1;Parent=Physo138803;constitutive=1;rank=1 scaffold_67 . CDS 16387 16465 . + 0 ID=Physo138803;Parent=Physo138803;rank=2 scaffold_67 . exon 16387 16465 . + . ID=Physo138803.2;Parent=Physo138803;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_67 . CDS 16751 16770 . + 0 ID=Physo138803;Parent=Physo138803;rank=3 scaffold_67 . exon 16751 16770 . + . ID=Physo138803.3;Parent=Physo138803;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 ensembl protein_coding_gene 17950 20367 . - . ID=Physo138804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670006;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 17950 20367 . - . ID=Physo138804;Parent=Physo138804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 17950 18976 . - . ID=Physo138804.5;Parent=Physo138804;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_67 . CDS 18074 18976 . - 0 ID=Physo138804;Parent=Physo138804;rank=5 scaffold_67 . CDS 19003 19080 . - 0 ID=Physo138804;Parent=Physo138804;rank=4 scaffold_67 . exon 19003 19080 . - . ID=Physo138804.4;Parent=Physo138804;constitutive=1;rank=4 scaffold_67 . CDS 19116 19149 . - 0 ID=Physo138804;Parent=Physo138804;rank=3 scaffold_67 . exon 19116 19149 . - . ID=Physo138804.3;Parent=Physo138804;constitutive=1;ensembl_phase=2;rank=3 scaffold_67 . CDS 19243 20015 . - 0 ID=Physo138804;Parent=Physo138804;rank=2 scaffold_67 . exon 19243 20015 . - . ID=Physo138804.2;Parent=Physo138804;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_67 . CDS 20035 20367 . - 0 ID=Physo138804;Parent=Physo138804;rank=1 scaffold_67 . repeat_region 19244 20005 . ? . description=trf scaffold_67 . repeat_region 20176 20280 . ? . description=trf scaffold_67 . repeat_region 20764 20778 . ? . description=dust scaffold_67 . repeat_region 22858 22879 . ? . description=trf scaffold_67 . biological_region 23361 23364 0.999 + . logic_name=eponine scaffold_67 . biological_region 25080 25083 0.999 + . logic_name=eponine scaffold_67 . biological_region 25765 25766 0.999 + . logic_name=eponine scaffold_67 . biological_region 27233 27238 0.999 + . logic_name=eponine scaffold_67 . biological_region 27717 27722 0.999 + . logic_name=eponine scaffold_67 . biological_region 27929 27932 0.999 + . logic_name=eponine scaffold_67 . repeat_region 29532 29626 . + . description=(TCG)n scaffold_67 . repeat_region 29559 29611 . ? . description=trf scaffold_67 . repeat_region 29562 29618 . ? . description=dust scaffold_67 . repeat_region 29573 29618 . ? . description=trf scaffold_67 . repeat_region 29574 29617 . ? . description=trf scaffold_67 . repeat_region 29720 29792 . ? . description=trf scaffold_67 . exon 20035 20367 . - . ID=Physo138804.1;Parent=Physo138804;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 22962 24392 . + . ID=Physo138805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670007;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 22962 24392 . + . ID=Physo138805;Parent=Physo138805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 22962 24392 . + 0 ID=Physo138805;Parent=Physo138805;rank=1 scaffold_67 . exon 22962 24392 . + . ID=Physo138805.1;Parent=Physo138805;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 27194 27851 . - . ID=Physo138806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670008;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 27194 27851 . - . ID=Physo138806;Parent=Physo138806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 27194 27851 . - . ID=Physo138806.1;Parent=Physo138806;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 27196 27849 . - 0 ID=Physo138806;Parent=Physo138806;rank=1 scaffold_67 ensembl protein_coding_gene 27992 29197 . + . ID=Physo138807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670009;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 27992 29197 . + . ID=Physo138807;Parent=Physo138807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 27992 29197 . + 0 ID=Physo138807;Parent=Physo138807;rank=1 scaffold_67 . exon 27992 29197 . + . ID=Physo138807.1;Parent=Physo138807;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 29189 30355 . - . ID=Physo138808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670010;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 29189 30355 . - . ID=Physo138808;Parent=Physo138808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 29189 29389 . - . ID=Physo138808.3;Parent=Physo138808;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_67 . CDS 29375 29389 . - 0 ID=Physo138808;Parent=Physo138808;rank=3 scaffold_67 . CDS 29468 30077 . - 0 ID=Physo138808;Parent=Physo138808;rank=2 scaffold_67 . exon 29468 30077 . - . ID=Physo138808.2;Parent=Physo138808;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 30169 30257 . - 0 ID=Physo138808;Parent=Physo138808;rank=1 scaffold_67 . exon 30169 30355 . - . ID=Physo138808.1;Parent=Physo138808;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_67 ensembl protein_coding_gene 33580 35097 . + . ID=Physo138809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670011;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 33580 35097 . + . ID=Physo138809;Parent=Physo138809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 33580 35097 . + 0 ID=Physo138809;Parent=Physo138809;rank=1 scaffold_67 . exon 33580 35097 . + . ID=Physo138809.1;Parent=Physo138809;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 36246 37604 . - . ID=Physo138810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670012;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 36246 37604 . - . ID=Physo138810;Parent=Physo138810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 36246 36782 . - 0 ID=Physo138810;Parent=Physo138810;rank=2 scaffold_67 . exon 36246 36782 . - . ID=Physo138810.2;Parent=Physo138810;constitutive=1;rank=2 scaffold_67 . CDS 36837 37604 . - 0 ID=Physo138810;Parent=Physo138810;rank=1 scaffold_67 . exon 36837 37604 . - . ID=Physo138810.1;Parent=Physo138810;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 38063 40444 . + . ID=Physo138811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670013;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 38063 40444 . + . ID=Physo138811;Parent=Physo138811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 38063 39530 . + 0 ID=Physo138811;Parent=Physo138811;rank=1 scaffold_67 . exon 38063 39530 . + . ID=Physo138811.1;Parent=Physo138811;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 39616 39784 . + 0 ID=Physo138811;Parent=Physo138811;rank=2 scaffold_67 . exon 39616 39784 . + . ID=Physo138811.2;Parent=Physo138811;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . CDS 39855 40199 . + 0 ID=Physo138811;Parent=Physo138811;rank=3 scaffold_67 . exon 39855 40199 . + . ID=Physo138811.3;Parent=Physo138811;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_67 . CDS 40273 40444 . + 0 ID=Physo138811;Parent=Physo138811;rank=4 scaffold_67 . biological_region 40011 40013 0.999 - . logic_name=eponine scaffold_67 . repeat_region 41772 41807 . ? . description=trf scaffold_67 . repeat_region 41842 41849 . ? . description=dust scaffold_67 . biological_region 42050 42050 0.999 - . logic_name=eponine scaffold_67 . biological_region 42064 42065 0.999 - . logic_name=eponine scaffold_67 . repeat_region 42231 42282 . ? . description=dust scaffold_67 . biological_region 43189 43192 0.999 + . logic_name=eponine scaffold_67 . biological_region 44098 44098 0.999 - . logic_name=eponine scaffold_67 . biological_region 45019 45024 0.999 - . logic_name=eponine scaffold_67 . biological_region 45259 45264 0.999 - . logic_name=eponine scaffold_67 . biological_region 48138 48138 0.999 + . logic_name=eponine scaffold_67 . biological_region 48220 48225 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 47843 48946 . + . ID=Physo109169;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670001;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 47843 48946 . + . ID=Physo109169;Parent=Physo109169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 47843 48436 . + . ID=Physo109169.1;Parent=Physo109169;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_67 . CDS 47889 48436 . + 0 ID=Physo109169;Parent=Physo109169;rank=1 scaffold_67 . CDS 48520 48946 . + 0 ID=Physo109169;Parent=Physo109169;rank=2 scaffold_67 . exon 48520 48946 . + . ID=Physo109169.2;Parent=Physo109169;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 ensembl protein_coding_gene 49430 50038 . - . ID=Physo109170;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670002;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 49430 50038 . - . ID=Physo109170;Parent=Physo109170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 49430 50038 . - . ID=Physo109170.1;Parent=Physo109170;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 49655 49993 . - 0 ID=Physo109170;Parent=Physo109170;rank=1 scaffold_67 . exon 40273 40444 . + . ID=Physo138811.4;Parent=Physo138811;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 ensembl protein_coding_gene 41903 42998 . + . ID=Physo138812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670014;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 41903 42998 . + . ID=Physo138812;Parent=Physo138812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 41903 42133 . + . ID=Physo138812.1;Parent=Physo138812;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_67 . exon 42216 42998 . + . ID=Physo138812.2;Parent=Physo138812;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_67 . CDS 42302 42997 . + 0 ID=Physo138812;Parent=Physo138812;rank=1 scaffold_67 ensembl protein_coding_gene 45471 47647 . - . ID=Physo138813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670015;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 45471 47647 . - . ID=Physo138813;Parent=Physo138813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 45471 46193 . - 0 ID=Physo138813;Parent=Physo138813;rank=6 scaffold_67 . exon 45471 46193 . - . ID=Physo138813.6;Parent=Physo138813;constitutive=1;rank=6 scaffold_67 . CDS 46263 46337 . - 0 ID=Physo138813;Parent=Physo138813;rank=5 scaffold_67 . exon 46263 46337 . - . ID=Physo138813.5;Parent=Physo138813;constitutive=1;rank=5 scaffold_67 . CDS 46414 46479 . - 0 ID=Physo138813;Parent=Physo138813;rank=4 scaffold_67 . exon 46414 46479 . - . ID=Physo138813.4;Parent=Physo138813;constitutive=1;rank=4 scaffold_67 . CDS 46549 47046 . - 0 ID=Physo138813;Parent=Physo138813;rank=3 scaffold_67 . exon 46549 47046 . - . ID=Physo138813.3;Parent=Physo138813;constitutive=1;rank=3 scaffold_67 . CDS 47131 47469 . - 0 ID=Physo138813;Parent=Physo138813;rank=2 scaffold_67 . exon 47131 47469 . - . ID=Physo138813.2;Parent=Physo138813;constitutive=1;rank=2 scaffold_67 . CDS 47585 47647 . - 0 ID=Physo138813;Parent=Physo138813;rank=1 scaffold_67 . exon 47585 47647 . - . ID=Physo138813.1;Parent=Physo138813;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 51668 52234 . + . ID=Physo138816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670018;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 51668 52234 . + . ID=Physo138816;Parent=Physo138816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 51668 51746 . + 0 ID=Physo138816;Parent=Physo138816;rank=1 scaffold_67 . exon 51668 51746 . + . ID=Physo138816.1;Parent=Physo138816;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 51767 52053 . + 0 ID=Physo138816;Parent=Physo138816;rank=2 scaffold_67 . exon 51767 52234 . + . ID=Physo138816.2;Parent=Physo138816;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_67 ensembl protein_coding_gene 52905 53487 . + . ID=Physo138817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670019;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 52905 53487 . + . ID=Physo138817;Parent=Physo138817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 52905 53016 . + 0 ID=Physo138817;Parent=Physo138817;rank=1 scaffold_67 . exon 52905 53016 . + . ID=Physo138817.1;Parent=Physo138817;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 53090 53188 . + 0 ID=Physo138817;Parent=Physo138817;rank=2 scaffold_67 . exon 53090 53188 . + . ID=Physo138817.2;Parent=Physo138817;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 53273 53487 . + 0 ID=Physo138817;Parent=Physo138817;rank=3 scaffold_67 . exon 53273 53487 . + . ID=Physo138817.3;Parent=Physo138817;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 ensembl protein_coding_gene 54194 54920 . + . ID=Physo138818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670020;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 54194 54920 . + . ID=Physo138818;Parent=Physo138818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 54194 54405 . + . ID=Physo138818.1;Parent=Physo138818;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 54294 54405 . + 0 ID=Physo138818;Parent=Physo138818;rank=1 scaffold_67 . CDS 54496 54773 . + 0 ID=Physo138818;Parent=Physo138818;rank=2 scaffold_67 . exon 54496 54920 . + . ID=Physo138818.2;Parent=Physo138818;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_67 ensembl protein_coding_gene 55916 56528 . + . ID=Physo138819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670021;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 55916 56528 . + . ID=Physo138819;Parent=Physo138819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 55916 56404 . + 0 ID=Physo138819;Parent=Physo138819;rank=1 scaffold_67 . exon 55916 56528 . + . ID=Physo138819.1;Parent=Physo138819;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_67 ensembl protein_coding_gene 58267 60468 . - . ID=Physo138820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670022;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 58267 60468 . - . ID=Physo138820;Parent=Physo138820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 58267 60468 . - 0 ID=Physo138820;Parent=Physo138820;rank=1 scaffold_67 . exon 58267 60468 . - . ID=Physo138820.1;Parent=Physo138820;constitutive=1;rank=1 scaffold_67 . repeat_region 61054 61101 . ? . description=trf scaffold_67 . repeat_region 61184 61250 . ? . description=trf scaffold_67 . repeat_region 61244 61310 . ? . description=trf scaffold_67 . biological_region 63088 63090 0.999 - . logic_name=eponine scaffold_67 . biological_region 65286 65292 0.999 + . logic_name=eponine scaffold_67 . repeat_region 65482 65521 . ? . description=trf scaffold_67 . biological_region 66154 66160 0.999 - . logic_name=eponine scaffold_67 . repeat_region 66180 66187 . ? . description=dust scaffold_67 . biological_region 66249 66251 0.999 - . logic_name=eponine scaffold_67 . repeat_region 67489 67514 . ? . description=dust scaffold_67 ensembl protein_coding_gene 60904 63100 . - . ID=Physo138821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670023;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 60904 63100 . - . ID=Physo138821;Parent=Physo138821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 60904 63100 . - . ID=Physo138821.1;Parent=Physo138821;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 60969 63074 . - 0 ID=Physo138821;Parent=Physo138821;rank=1 scaffold_67 ensembl protein_coding_gene 65059 66313 . + . ID=Physo138822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670024;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 65059 66313 . + . ID=Physo138822;Parent=Physo138822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 65059 65351 . + 0 ID=Physo138822;Parent=Physo138822;rank=1 scaffold_67 . exon 65059 65351 . + . ID=Physo138822.1;Parent=Physo138822;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 65551 65843 . + 0 ID=Physo138822;Parent=Physo138822;rank=2 scaffold_67 . exon 65551 65843 . + . ID=Physo138822.2;Parent=Physo138822;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 65914 66170 . + 0 ID=Physo138822;Parent=Physo138822;rank=3 scaffold_67 . exon 65914 66170 . + . ID=Physo138822.3;Parent=Physo138822;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 66233 66313 . + 0 ID=Physo138822;Parent=Physo138822;rank=4 scaffold_67 . exon 66233 66313 . + . ID=Physo138822.4;Parent=Physo138822;constitutive=1;rank=4 scaffold_67 ensembl protein_coding_gene 69842 71763 . - . ID=Physo138823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670025;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 69842 71763 . - . ID=Physo138823;Parent=Physo138823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 69842 69859 . - 0 ID=Physo138823;Parent=Physo138823;rank=5 scaffold_67 . exon 69842 69859 . - . ID=Physo138823.5;Parent=Physo138823;constitutive=1;rank=5 scaffold_67 . CDS 70114 70494 . - 0 ID=Physo138823;Parent=Physo138823;rank=4 scaffold_67 . CDS 70656 70892 . - 0 ID=Physo138823;Parent=Physo138823;rank=3 scaffold_67 . CDS 70965 71312 . - 0 ID=Physo138823;Parent=Physo138823;rank=2 scaffold_67 . CDS 71410 71763 . - 0 ID=Physo138823;Parent=Physo138823;rank=1 scaffold_67 . exon 70114 70494 . - . ID=Physo138823.4;Parent=Physo138823;constitutive=1;rank=4 scaffold_67 . exon 70656 70892 . - . ID=Physo138823.3;Parent=Physo138823;constitutive=1;rank=3 scaffold_67 . exon 70965 71312 . - . ID=Physo138823.2;Parent=Physo138823;constitutive=1;rank=2 scaffold_67 . exon 71410 71763 . - . ID=Physo138823.1;Parent=Physo138823;constitutive=1;rank=1 scaffold_67 . repeat_region 80418 80458 . ? . description=trf scaffold_67 . repeat_region 81705 81731 . ? . description=trf scaffold_67 . repeat_region 82795 82842 . ? . description=trf scaffold_67 . biological_region 83267 83270 0.999 + . logic_name=eponine scaffold_67 . repeat_region 83416 83465 . ? . description=dust scaffold_67 . repeat_region 84150 84157 . ? . description=dust scaffold_67 . biological_region 84721 84724 0.999 - . logic_name=eponine scaffold_67 . biological_region 84946 84949 0.999 + . logic_name=eponine scaffold_67 . repeat_region 85024 85057 . ? . description=trf scaffold_67 . repeat_region 85447 85496 . ? . description=dust scaffold_67 . repeat_region 86241 86267 . ? . description=trf scaffold_67 . repeat_region 87331 87378 . ? . description=trf scaffold_67 . biological_region 88342 88344 0.999 + . logic_name=eponine scaffold_67 . repeat_region 88625 88714 . ? . description=trf scaffold_67 . biological_region 88736 88739 0.999 - . logic_name=eponine scaffold_67 . biological_region 88961 88964 0.999 + . logic_name=eponine scaffold_67 . repeat_region 89527 89534 . ? . description=dust scaffold_67 . biological_region 89673 89674 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 80560 83071 . - . ID=Physo138824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670026;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 80560 83071 . - . ID=Physo138824;Parent=Physo138824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 80560 80657 . - 0 ID=Physo138824;Parent=Physo138824;rank=6 scaffold_67 . exon 80560 80657 . - . ID=Physo138824.6;Parent=Physo138824;constitutive=1;ensembl_phase=1;rank=6 scaffold_67 . CDS 80682 80807 . - 0 ID=Physo138824;Parent=Physo138824;rank=5 scaffold_67 . exon 80682 80807 . - . ID=Physo138824.5;Parent=Physo138824;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_67 . CDS 80886 81856 . - 0 ID=Physo138824;Parent=Physo138824;rank=4 scaffold_67 . exon 80886 81856 . - . ID=Physo138824.4;Parent=Physo138824;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 81897 82354 . - 0 ID=Physo138824;Parent=Physo138824;rank=3 scaffold_67 . exon 81897 82354 . - . ID=Physo138824.3;Parent=Physo138824;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 82448 82847 . - 0 ID=Physo138824;Parent=Physo138824;rank=2 scaffold_67 . exon 82448 82847 . - . ID=Physo138824.2;Parent=Physo138824;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 83058 83071 . - 0 ID=Physo138824;Parent=Physo138824;rank=1 scaffold_67 . exon 83058 83071 . - . ID=Physo138824.1;Parent=Physo138824;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 85498 87607 . - . ID=Physo138825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670027;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 85498 87607 . - . ID=Physo138825;Parent=Physo138825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 85498 86392 . - 0 ID=Physo138825;Parent=Physo138825;rank=4 scaffold_67 . exon 85498 86392 . - . ID=Physo138825.4;Parent=Physo138825;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 86433 86890 . - 0 ID=Physo138825;Parent=Physo138825;rank=3 scaffold_67 . exon 86433 86890 . - . ID=Physo138825.3;Parent=Physo138825;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 86984 87383 . - 0 ID=Physo138825;Parent=Physo138825;rank=2 scaffold_67 . exon 86984 87383 . - . ID=Physo138825.2;Parent=Physo138825;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 87594 87607 . - 0 ID=Physo138825;Parent=Physo138825;rank=1 scaffold_67 . exon 87594 87607 . - . ID=Physo138825.1;Parent=Physo138825;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 96962 97581 . + . ID=Physo138826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670028;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 96962 97581 . + . ID=Physo138826;Parent=Physo138826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 96962 97193 . + 0 ID=Physo138826;Parent=Physo138826;rank=1 scaffold_67 . exon 96962 97193 . + . ID=Physo138826.1;Parent=Physo138826;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 97273 97474 . + 0 ID=Physo138826;Parent=Physo138826;rank=2 scaffold_67 . exon 97273 97474 . + . ID=Physo138826.2;Parent=Physo138826;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . CDS 97521 97581 . + 0 ID=Physo138826;Parent=Physo138826;rank=3 scaffold_67 . exon 97521 97581 . + . ID=Physo138826.3;Parent=Physo138826;constitutive=1;ensembl_phase=2;rank=3 scaffold_67 . biological_region 105079 105082 0.999 - . logic_name=eponine scaffold_67 . repeat_region 105256 105298 . ? . description=trf scaffold_67 . repeat_region 106260 106345 . ? . description=trf scaffold_67 ensembl protein_coding_gene 105272 107558 . + . ID=Physo138827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670029;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 105272 107558 . + . ID=Physo138827;Parent=Physo138827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 105272 105312 . + 0 ID=Physo138827;Parent=Physo138827;rank=1 scaffold_67 . exon 105272 105312 . + . ID=Physo138827.1;Parent=Physo138827;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 105745 105982 . + 0 ID=Physo138827;Parent=Physo138827;rank=2 scaffold_67 . exon 105745 105982 . + . ID=Physo138827.2;Parent=Physo138827;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 106021 106106 . + 0 ID=Physo138827;Parent=Physo138827;rank=3 scaffold_67 . exon 106021 106106 . + . ID=Physo138827.3;Parent=Physo138827;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 106168 106274 . + 0 ID=Physo138827;Parent=Physo138827;rank=4 scaffold_67 . exon 106168 106274 . + . ID=Physo138827.4;Parent=Physo138827;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 106379 106513 . + 0 ID=Physo138827;Parent=Physo138827;rank=5 scaffold_67 . exon 106379 106513 . + . ID=Physo138827.5;Parent=Physo138827;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_67 . CDS 106562 106727 . + 0 ID=Physo138827;Parent=Physo138827;rank=6 scaffold_67 . exon 106562 106727 . + . ID=Physo138827.6;Parent=Physo138827;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_67 . CDS 106810 107102 . + 0 ID=Physo138827;Parent=Physo138827;rank=7 scaffold_67 . exon 106810 107102 . + . ID=Physo138827.7;Parent=Physo138827;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_67 . CDS 107182 107558 . + 0 ID=Physo138827;Parent=Physo138827;rank=8 scaffold_67 . exon 107182 107558 . + . ID=Physo138827.8;Parent=Physo138827;constitutive=1;ensembl_phase=1;rank=8 scaffold_67 ensembl protein_coding_gene 107687 108538 . - . ID=Physo138828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670030;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 107687 108538 . - . ID=Physo138828;Parent=Physo138828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 107687 108142 . - 0 ID=Physo138828;Parent=Physo138828;rank=2 scaffold_67 . exon 107687 108142 . - . ID=Physo138828.2;Parent=Physo138828;constitutive=1;rank=2 scaffold_67 . CDS 108275 108538 . - 0 ID=Physo138828;Parent=Physo138828;rank=1 scaffold_67 . exon 108275 108538 . - . ID=Physo138828.1;Parent=Physo138828;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 116063 117427 . + . ID=Physo109171;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670003;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 116063 117427 . + . ID=Physo109171;Parent=Physo109171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 116063 116170 . + . ID=Physo109171.1;Parent=Physo109171;constitutive=1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 116123 116170 . + 0 ID=Physo109171;Parent=Physo109171;rank=1 scaffold_67 . CDS 116281 116396 . + 0 ID=Physo109171;Parent=Physo109171;rank=2 scaffold_67 . exon 116281 116396 . + . ID=Physo109171.2;Parent=Physo109171;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_67 . CDS 116495 116739 . + 0 ID=Physo109171;Parent=Physo109171;rank=3 scaffold_67 . exon 116495 116739 . + . ID=Physo109171.3;Parent=Physo109171;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_67 . CDS 116830 117298 . + 0 ID=Physo109171;Parent=Physo109171;rank=4 scaffold_67 . exon 116830 117298 . + . ID=Physo109171.4;Parent=Physo109171;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_67 . CDS 117376 117427 . + 0 ID=Physo109171;Parent=Physo109171;rank=5 scaffold_67 . exon 117376 117427 . + . ID=Physo109171.5;Parent=Physo109171;constitutive=1;ensembl_phase=2;rank=5 scaffold_67 ensembl protein_coding_gene 110307 112547 . - . ID=Physo138829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670031;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 110307 112547 . - . ID=Physo138829;Parent=Physo138829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 110307 112547 . - 0 ID=Physo138829;Parent=Physo138829;rank=1 scaffold_67 . exon 110307 112547 . - . ID=Physo138829.1;Parent=Physo138829;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 112963 114676 . - . ID=Physo138830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670032;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 112963 114676 . - . ID=Physo138830;Parent=Physo138830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 112963 113805 . - 0 ID=Physo138830;Parent=Physo138830;rank=2 scaffold_67 . exon 112963 113805 . - . ID=Physo138830.2;Parent=Physo138830;constitutive=1;rank=2 scaffold_67 . CDS 113876 114676 . - 0 ID=Physo138830;Parent=Physo138830;rank=1 scaffold_67 . exon 113876 114676 . - . ID=Physo138830.1;Parent=Physo138830;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 115252 115956 . + . ID=Physo138831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670033;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 115252 115956 . + . ID=Physo138831;Parent=Physo138831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 115252 115507 . + . ID=Physo138831.1;Parent=Physo138831;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_67 . CDS 115254 115507 . + 0 ID=Physo138831;Parent=Physo138831;rank=1 scaffold_67 . CDS 115636 115888 . + 0 ID=Physo138831;Parent=Physo138831;rank=2 scaffold_67 . exon 115636 115956 . + . ID=Physo138831.2;Parent=Physo138831;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_67 ensembl protein_coding_gene 117775 118830 . - . ID=Physo138833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670035;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 117775 118830 . - . ID=Physo138833;Parent=Physo138833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 117775 118830 . - 0 ID=Physo138833;Parent=Physo138833;rank=1 scaffold_67 . exon 117775 118830 . - . ID=Physo138833.1;Parent=Physo138833;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 119241 120038 . + . ID=Physo138834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670036;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 119241 120038 . + . ID=Physo138834;Parent=Physo138834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 119241 120038 . + . ID=Physo138834.1;Parent=Physo138834;constitutive=1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 119259 120038 . + 0 ID=Physo138834;Parent=Physo138834;rank=1 scaffold_67 . biological_region 120665 120669 0.999 + . logic_name=eponine scaffold_67 . biological_region 120792 120795 0.999 - . logic_name=eponine scaffold_67 . biological_region 120816 120817 0.999 + . logic_name=eponine scaffold_67 . biological_region 120998 120998 0.999 + . logic_name=eponine scaffold_67 . repeat_region 121086 121136 . ? . description=trf scaffold_67 . repeat_region 121093 121149 . ? . description=dust scaffold_67 . biological_region 121154 121159 0.999 - . logic_name=eponine scaffold_67 . biological_region 121235 121238 0.999 + . logic_name=eponine scaffold_67 . biological_region 121254 121257 0.999 + . logic_name=eponine scaffold_67 . biological_region 121265 121266 0.999 + . logic_name=eponine scaffold_67 . biological_region 121337 121337 0.999 - . logic_name=eponine scaffold_67 . repeat_region 121424 121431 . ? . description=dust scaffold_67 . biological_region 124015 124018 0.999 + . logic_name=eponine scaffold_67 . biological_region 124102 124104 0.999 - . logic_name=eponine scaffold_67 . biological_region 124188 124191 0.999 + . logic_name=eponine scaffold_67 . biological_region 124493 124498 0.999 - . logic_name=eponine scaffold_67 . biological_region 124669 124672 0.999 + . logic_name=eponine scaffold_67 . repeat_region 125447 125459 . ? . description=dust scaffold_67 . repeat_region 126370 126378 . ? . description=dust scaffold_67 . repeat_region 126746 126753 . ? . description=dust scaffold_67 . repeat_region 127507 127545 . ? . description=trf scaffold_67 . biological_region 129874 129877 0.999 + . logic_name=eponine scaffold_67 ensembl protein_coding_gene 120357 121347 . - . ID=Physo138835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670037;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 120357 121347 . - . ID=Physo138835;Parent=Physo138835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 120357 121331 . - 0 ID=Physo138835;Parent=Physo138835;rank=1 scaffold_67 . exon 120357 121347 . - . ID=Physo138835.1;Parent=Physo138835;constitutive=1;ensembl_phase=-1;rank=1 scaffold_67 ensembl protein_coding_gene 121633 124899 . - . ID=Physo138836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670038;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 121633 124899 . - . ID=Physo138836;Parent=Physo138836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 121633 124899 . - 0 ID=Physo138836;Parent=Physo138836;rank=1 scaffold_67 . exon 121633 124899 . - . ID=Physo138836.1;Parent=Physo138836;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 128155 129435 . + . ID=Physo138837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670039;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 128155 129435 . + . ID=Physo138837;Parent=Physo138837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 128155 128399 . + 0 ID=Physo138837;Parent=Physo138837;rank=1 scaffold_67 . exon 128155 128399 . + . ID=Physo138837.1;Parent=Physo138837;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 128517 128820 . + 0 ID=Physo138837;Parent=Physo138837;rank=2 scaffold_67 . exon 128517 128820 . + . ID=Physo138837.2;Parent=Physo138837;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 128884 129435 . + 0 ID=Physo138837;Parent=Physo138837;rank=3 scaffold_67 . exon 128884 129435 . + . ID=Physo138837.3;Parent=Physo138837;constitutive=1;rank=3 scaffold_67 ensembl protein_coding_gene 129785 132693 . - . ID=Physo138838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670040;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 129785 132693 . - . ID=Physo138838;Parent=Physo138838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 129785 130302 . - 0 ID=Physo138838;Parent=Physo138838;rank=6 scaffold_67 . exon 129785 130302 . - . ID=Physo138838.6;Parent=Physo138838;constitutive=1;ensembl_phase=1;rank=6 scaffold_67 . CDS 130350 130989 . - 0 ID=Physo138838;Parent=Physo138838;rank=5 scaffold_67 . CDS 131066 131117 . - 0 ID=Physo138838;Parent=Physo138838;rank=4 scaffold_67 . CDS 131637 132016 . - 0 ID=Physo138838;Parent=Physo138838;rank=3 scaffold_67 . CDS 132168 132404 . - 0 ID=Physo138838;Parent=Physo138838;rank=2 scaffold_67 . CDS 132475 132693 . - 0 ID=Physo138838;Parent=Physo138838;rank=1 scaffold_67 ensembl protein_coding_gene 133983 135163 . - . ID=Physo109172;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670004;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 133983 135163 . - . ID=Physo109172;Parent=Physo109172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 133983 135163 . - . ID=Physo109172.1;Parent=Physo109172;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 134149 135123 . - 0 ID=Physo109172;Parent=Physo109172;rank=1 scaffold_67 ensembl protein_coding_gene 138889 139345 . + . ID=Physo109173;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670005;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 138889 139345 . + . ID=Physo109173;Parent=Physo109173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 138889 139116 . + . ID=Physo109173.1;Parent=Physo109173;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_67 . CDS 138890 139116 . + 0 ID=Physo109173;Parent=Physo109173;rank=1 scaffold_67 . CDS 139201 139207 . + 0 ID=Physo109173;Parent=Physo109173;rank=2 scaffold_67 . exon 139201 139345 . + . ID=Physo109173.2;Parent=Physo109173;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_67 . exon 130350 130989 . - . ID=Physo138838.5;Parent=Physo138838;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_67 . exon 131066 131117 . - . ID=Physo138838.4;Parent=Physo138838;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . exon 131637 132016 . - . ID=Physo138838.3;Parent=Physo138838;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . exon 132168 132404 . - . ID=Physo138838.2;Parent=Physo138838;constitutive=1;rank=2 scaffold_67 . exon 132475 132693 . - . ID=Physo138838.1;Parent=Physo138838;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 133301 133767 . + . ID=Physo138839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670041;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 133301 133767 . + . ID=Physo138839;Parent=Physo138839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 133301 133460 . + 0 ID=Physo138839;Parent=Physo138839;rank=1 scaffold_67 . exon 133301 133460 . + . ID=Physo138839.1;Parent=Physo138839;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 133538 133767 . + 0 ID=Physo138839;Parent=Physo138839;rank=2 scaffold_67 . exon 133538 133767 . + . ID=Physo138839.2;Parent=Physo138839;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 ensembl protein_coding_gene 136392 138683 . - . ID=Physo138841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670043;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 136392 138683 . - . ID=Physo138841;Parent=Physo138841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 136392 138683 . - . ID=Physo138841.1;Parent=Physo138841;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_67 . CDS 136500 138683 . - 0 ID=Physo138841;Parent=Physo138841;rank=1 scaffold_67 ensembl protein_coding_gene 139458 142472 . - . ID=Physo138843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670045;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 139458 142472 . - . ID=Physo138843;Parent=Physo138843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 139458 140454 . - 0 ID=Physo138843;Parent=Physo138843;rank=2 scaffold_67 . exon 139458 140454 . - . ID=Physo138843.2;Parent=Physo138843;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 140797 142472 . - 0 ID=Physo138843;Parent=Physo138843;rank=1 scaffold_67 . biological_region 142214 142219 0.999 + . logic_name=eponine scaffold_67 . biological_region 142383 142388 0.999 + . logic_name=eponine scaffold_67 . repeat_region 144697 144704 . ? . description=dust scaffold_67 . biological_region 145937 145944 0.999 + . logic_name=eponine scaffold_67 . biological_region 145982 145990 0.999 - . logic_name=eponine scaffold_67 . biological_region 146038 146045 0.999 + . logic_name=eponine scaffold_67 . biological_region 146530 146533 0.999 + . logic_name=eponine scaffold_67 . biological_region 146656 146659 0.999 - . logic_name=eponine scaffold_67 . biological_region 146673 146679 0.999 - . logic_name=eponine scaffold_67 . biological_region 146693 146701 0.999 - . logic_name=eponine scaffold_67 . biological_region 146713 146715 0.999 + . logic_name=eponine scaffold_67 . biological_region 146729 146736 0.999 + . logic_name=eponine scaffold_67 . biological_region 147557 147557 0.999 - . logic_name=eponine scaffold_67 . biological_region 147694 147699 0.999 + . logic_name=eponine scaffold_67 . biological_region 147716 147723 0.999 + . logic_name=eponine scaffold_67 . biological_region 147799 147803 0.999 - . logic_name=eponine scaffold_67 . biological_region 147937 147939 0.999 - . logic_name=eponine scaffold_67 . biological_region 147953 147960 0.999 + . logic_name=eponine scaffold_67 . biological_region 148030 148033 0.999 + . logic_name=eponine scaffold_67 . biological_region 148650 148650 0.999 + . logic_name=eponine scaffold_67 . biological_region 148920 148922 0.999 + . logic_name=eponine scaffold_67 . biological_region 148955 148956 0.999 + . logic_name=eponine scaffold_67 . biological_region 148993 148996 0.999 - . logic_name=eponine scaffold_67 . biological_region 149018 149020 0.999 - . logic_name=eponine scaffold_67 . biological_region 149019 149019 0.999 + . logic_name=eponine scaffold_67 . biological_region 149043 149047 0.999 - . logic_name=eponine scaffold_67 . biological_region 149049 149052 0.999 + . logic_name=eponine scaffold_67 . biological_region 149431 149432 0.999 - . logic_name=eponine scaffold_67 . repeat_region 149455 149462 . ? . description=dust scaffold_67 ensembl protein_coding_gene 142628 143558 . + . ID=Physo109174;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670006;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 142628 143558 . + . ID=Physo109174;Parent=Physo109174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 142628 142686 . + 0 ID=Physo109174;Parent=Physo109174;rank=1 scaffold_67 . exon 142628 142686 . + . ID=Physo109174.1;Parent=Physo109174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 142711 142967 . + 0 ID=Physo109174;Parent=Physo109174;rank=2 scaffold_67 . exon 142711 142967 . + . ID=Physo109174.2;Parent=Physo109174;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 143044 143090 . + 0 ID=Physo109174;Parent=Physo109174;rank=3 scaffold_67 . exon 143044 143090 . + . ID=Physo109174.3;Parent=Physo109174;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 143182 143229 . + 0 ID=Physo109174;Parent=Physo109174;rank=4 scaffold_67 . exon 143182 143229 . + . ID=Physo109174.4;Parent=Physo109174;constitutive=1;rank=4 scaffold_67 . CDS 143337 143393 . + 0 ID=Physo109174;Parent=Physo109174;rank=5 scaffold_67 . exon 143337 143393 . + . ID=Physo109174.5;Parent=Physo109174;constitutive=1;rank=5 scaffold_67 . CDS 143469 143558 . + 0 ID=Physo109174;Parent=Physo109174;rank=6 scaffold_67 . exon 143469 143558 . + . ID=Physo109174.6;Parent=Physo109174;constitutive=1;rank=6 scaffold_67 . exon 140797 142472 . - . ID=Physo138843.1;Parent=Physo138843;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 143629 144510 . - . ID=Physo138845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670047;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 143629 144510 . - . ID=Physo138845;Parent=Physo138845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 143629 143811 . - . ID=Physo138845.2;Parent=Physo138845;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_67 . CDS 143773 143811 . - 0 ID=Physo138845;Parent=Physo138845;rank=2 scaffold_67 . CDS 144125 144481 . - 0 ID=Physo138845;Parent=Physo138845;rank=1 scaffold_67 . exon 144125 144510 . - . ID=Physo138845.1;Parent=Physo138845;constitutive=1;ensembl_phase=-1;rank=1 scaffold_67 ensembl protein_coding_gene 144742 146998 . - . ID=Physo138846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670048;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 144742 146998 . - . ID=Physo138846;Parent=Physo138846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 144742 145114 . - . ID=Physo138846.5;Parent=Physo138846;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_67 . CDS 144891 145114 . - 0 ID=Physo138846;Parent=Physo138846;rank=5 scaffold_67 . CDS 145187 145357 . - 0 ID=Physo138846;Parent=Physo138846;rank=4 scaffold_67 . exon 145187 145357 . - . ID=Physo138846.4;Parent=Physo138846;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_67 . CDS 145917 146010 . - 0 ID=Physo138846;Parent=Physo138846;rank=3 scaffold_67 . exon 145917 146010 . - . ID=Physo138846.3;Parent=Physo138846;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_67 . CDS 146056 146458 . - 0 ID=Physo138846;Parent=Physo138846;rank=2 scaffold_67 . exon 146056 146458 . - . ID=Physo138846.2;Parent=Physo138846;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 146559 146998 . - 0 ID=Physo138846;Parent=Physo138846;rank=1 scaffold_67 . exon 146559 146998 . - . ID=Physo138846.1;Parent=Physo138846;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 149727 151005 . + . ID=Physo138847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670049;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 149727 151005 . + . ID=Physo138847;Parent=Physo138847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 149727 150908 . + 0 ID=Physo138847;Parent=Physo138847;rank=1 scaffold_67 . exon 149727 151005 . + . ID=Physo138847.1;Parent=Physo138847;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_67 . repeat_region 157913 158054 . ? . description=trf scaffold_67 . repeat_region 158221 158285 . ? . description=trf scaffold_67 ensembl protein_coding_gene 152503 153504 . - . ID=Physo138848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670050;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 152503 153504 . - . ID=Physo138848;Parent=Physo138848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 152503 153504 . - 0 ID=Physo138848;Parent=Physo138848;rank=1 scaffold_67 . exon 152503 153504 . - . ID=Physo138848.1;Parent=Physo138848;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 157695 158576 . - . ID=Physo138849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670051;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 157695 158576 . - . ID=Physo138849;Parent=Physo138849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 157695 158576 . - 0 ID=Physo138849;Parent=Physo138849;rank=1 scaffold_67 . exon 157695 158576 . - . ID=Physo138849.1;Parent=Physo138849;constitutive=1;rank=1 scaffold_67 . biological_region 161857 161859 0.999 + . logic_name=eponine scaffold_67 . biological_region 164079 164083 0.999 + . logic_name=eponine scaffold_67 . biological_region 166830 166831 0.999 + . logic_name=eponine scaffold_67 . biological_region 169086 169089 0.999 - . logic_name=eponine scaffold_67 . repeat_region 169397 169406 . ? . description=dust scaffold_67 . biological_region 169408 169413 0.999 + . logic_name=eponine scaffold_67 ensembl protein_coding_gene 161207 162088 . + . ID=Physo109175;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670007;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 161207 162088 . + . ID=Physo109175;Parent=Physo109175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 161207 162088 . + 0 ID=Physo109175;Parent=Physo109175;rank=1 scaffold_67 . exon 161207 162088 . + . ID=Physo109175.1;Parent=Physo109175;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 162364 164201 . - . ID=Physo138851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670053;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 162364 164201 . - . ID=Physo138851;Parent=Physo138851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 162364 163734 . - 0 ID=Physo138851;Parent=Physo138851;rank=2 scaffold_67 . exon 162364 163734 . - . ID=Physo138851.2;Parent=Physo138851;constitutive=1;rank=2 scaffold_67 . CDS 163869 164201 . - 0 ID=Physo138851;Parent=Physo138851;rank=1 scaffold_67 . exon 163869 164201 . - . ID=Physo138851.1;Parent=Physo138851;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 164351 164957 . - . ID=Physo138852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670054;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 164351 164957 . - . ID=Physo138852;Parent=Physo138852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 164351 164484 . - . ID=Physo138852.3;Parent=Physo138852;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_67 . CDS 164408 164484 . - 0 ID=Physo138852;Parent=Physo138852;rank=3 scaffold_67 . CDS 164587 164839 . - 0 ID=Physo138852;Parent=Physo138852;rank=2 scaffold_67 . exon 164587 164839 . - . ID=Physo138852.2;Parent=Physo138852;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_67 . CDS 164874 164957 . - 0 ID=Physo138852;Parent=Physo138852;rank=1 scaffold_67 . exon 164874 164957 . - . ID=Physo138852.1;Parent=Physo138852;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 166199 167218 . + . ID=Physo138853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670055;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 166199 167218 . + . ID=Physo138853;Parent=Physo138853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 166199 167218 . + 0 ID=Physo138853;Parent=Physo138853;rank=1 scaffold_67 . exon 166199 167218 . + . ID=Physo138853.1;Parent=Physo138853;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 167359 168529 . + . ID=Physo138854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670056;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 167359 168529 . + . ID=Physo138854;Parent=Physo138854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 167359 168462 . + 0 ID=Physo138854;Parent=Physo138854;rank=1 scaffold_67 . exon 167359 168462 . + . ID=Physo138854.1;Parent=Physo138854;constitutive=1;rank=1 scaffold_67 . CDS 168509 168529 . + 0 ID=Physo138854;Parent=Physo138854;rank=2 scaffold_67 . exon 168509 168529 . + . ID=Physo138854.2;Parent=Physo138854;constitutive=1;rank=2 scaffold_67 ensembl protein_coding_gene 177964 178221 . - . ID=Physo119830;biotype=protein_coding;external_name=estExt_Genewise1.C_670094;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 177964 178221 . - . ID=Physo119830;Parent=Physo119830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 177964 178179 . - 0 ID=Physo119830;Parent=Physo119830;rank=1 scaffold_67 . exon 177964 178221 . - . ID=Physo119830.1;Parent=Physo119830;constitutive=1;ensembl_phase=-1;rank=1 scaffold_67 ensembl protein_coding_gene 171563 173758 . + . ID=Physo138855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670057;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 171563 173758 . + . ID=Physo138855;Parent=Physo138855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 171563 171632 . + 0 ID=Physo138855;Parent=Physo138855;rank=1 scaffold_67 . exon 171563 171632 . + . ID=Physo138855.1;Parent=Physo138855;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 171814 171993 . + 0 ID=Physo138855;Parent=Physo138855;rank=2 scaffold_67 . exon 171814 171993 . + . ID=Physo138855.2;Parent=Physo138855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 172024 172317 . + 0 ID=Physo138855;Parent=Physo138855;rank=3 scaffold_67 . exon 172024 172317 . + . ID=Physo138855.3;Parent=Physo138855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 172408 172711 . + 0 ID=Physo138855;Parent=Physo138855;rank=4 scaffold_67 . exon 172408 172711 . + . ID=Physo138855.4;Parent=Physo138855;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_67 . CDS 172744 172811 . + 0 ID=Physo138855;Parent=Physo138855;rank=5 scaffold_67 . exon 172744 172811 . + . ID=Physo138855.5;Parent=Physo138855;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_67 . CDS 172962 173156 . + 0 ID=Physo138855;Parent=Physo138855;rank=6 scaffold_67 . exon 172962 173156 . + . ID=Physo138855.6;Parent=Physo138855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_67 . CDS 173322 173335 . + 0 ID=Physo138855;Parent=Physo138855;rank=7 scaffold_67 . exon 173322 173335 . + . ID=Physo138855.7;Parent=Physo138855;constitutive=1;ensembl_phase=1;rank=7 scaffold_67 . CDS 173432 173758 . + 0 ID=Physo138855;Parent=Physo138855;rank=8 scaffold_67 . exon 173432 173758 . + . ID=Physo138855.8;Parent=Physo138855;constitutive=1;rank=8 scaffold_67 ensembl protein_coding_gene 174897 175996 . + . ID=Physo138856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670058;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 174897 175996 . + . ID=Physo138856;Parent=Physo138856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 174897 175233 . + 0 ID=Physo138856;Parent=Physo138856;rank=1 scaffold_67 . exon 174897 175233 . + . ID=Physo138856.1;Parent=Physo138856;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 175258 175490 . + 0 ID=Physo138856;Parent=Physo138856;rank=2 scaffold_67 . exon 175258 175490 . + . ID=Physo138856.2;Parent=Physo138856;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 175532 175996 . + 0 ID=Physo138856;Parent=Physo138856;rank=3 scaffold_67 . exon 175532 175996 . + . ID=Physo138856.3;Parent=Physo138856;constitutive=1;rank=3 scaffold_67 . repeat_region 179927 179941 . ? . description=dust scaffold_67 . repeat_region 183196 183203 . ? . description=dust scaffold_67 . repeat_region 184039 184113 . ? . description=trf scaffold_67 . repeat_region 186758 186765 . ? . description=dust scaffold_67 . repeat_region 189539 189546 . ? . description=dust scaffold_67 ensembl protein_coding_gene 196446 197523 . - . ID=Physo138857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670059;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 196446 197523 . - . ID=Physo138857;Parent=Physo138857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 196446 196763 . - 0 ID=Physo138857;Parent=Physo138857;rank=3 scaffold_67 . exon 196446 196763 . - . ID=Physo138857.3;Parent=Physo138857;constitutive=1;rank=3 scaffold_67 . CDS 196877 197307 . - 0 ID=Physo138857;Parent=Physo138857;rank=2 scaffold_67 . exon 196877 197307 . - . ID=Physo138857.2;Parent=Physo138857;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 197472 197523 . - 0 ID=Physo138857;Parent=Physo138857;rank=1 scaffold_67 . exon 197472 197523 . - . ID=Physo138857.1;Parent=Physo138857;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . repeat_region 200882 200889 . ? . description=dust scaffold_67 . biological_region 201817 201820 0.999 + . logic_name=eponine scaffold_67 . repeat_region 208420 208430 . ? . description=dust scaffold_67 . repeat_region 208534 208572 . ? . description=dust scaffold_67 . repeat_region 208827 208872 . ? . description=trf scaffold_67 . repeat_region 208835 208883 . ? . description=trf scaffold_67 ensembl protein_coding_gene 204476 205624 . + . ID=Physo109176;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670008;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 204476 205624 . + . ID=Physo109176;Parent=Physo109176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 204476 205624 . + 0 ID=Physo109176;Parent=Physo109176;rank=1 scaffold_67 . exon 204476 205624 . + . ID=Physo109176.1;Parent=Physo109176;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 201522 204340 . + . ID=Physo138858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670060;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 201522 204340 . + . ID=Physo138858;Parent=Physo138858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 201522 201719 . + 0 ID=Physo138858;Parent=Physo138858;rank=1 scaffold_67 . exon 201522 201719 . + . ID=Physo138858.1;Parent=Physo138858;constitutive=1;rank=1 scaffold_67 . CDS 201843 203418 . + 0 ID=Physo138858;Parent=Physo138858;rank=2 scaffold_67 . exon 201843 203418 . + . ID=Physo138858.2;Parent=Physo138858;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_67 . CDS 203514 203787 . + 0 ID=Physo138858;Parent=Physo138858;rank=3 scaffold_67 . exon 203514 203787 . + . ID=Physo138858.3;Parent=Physo138858;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_67 . CDS 203893 204340 . + 0 ID=Physo138858;Parent=Physo138858;rank=4 scaffold_67 . exon 203893 204340 . + . ID=Physo138858.4;Parent=Physo138858;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 ensembl protein_coding_gene 211591 213060 . - . ID=Physo109177;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670009;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 211591 213060 . - . ID=Physo109177;Parent=Physo109177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 211591 213060 . - 0 ID=Physo109177;Parent=Physo109177;rank=1 scaffold_67 . exon 211591 213060 . - . ID=Physo109177.1;Parent=Physo109177;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 213215 215621 . - . ID=Physo138861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670063;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 213215 215621 . - . ID=Physo138861;Parent=Physo138861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 213215 213916 . - 0 ID=Physo138861;Parent=Physo138861;rank=4 scaffold_67 . exon 213215 213916 . - . ID=Physo138861.4;Parent=Physo138861;constitutive=1;rank=4 scaffold_67 . CDS 213943 214509 . - 0 ID=Physo138861;Parent=Physo138861;rank=3 scaffold_67 . exon 213943 214509 . - . ID=Physo138861.3;Parent=Physo138861;constitutive=1;rank=3 scaffold_67 . CDS 214553 214578 . - 0 ID=Physo138861;Parent=Physo138861;rank=2 scaffold_67 . exon 214553 214578 . - . ID=Physo138861.2;Parent=Physo138861;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 214616 215621 . - 0 ID=Physo138861;Parent=Physo138861;rank=1 scaffold_67 . exon 214616 215621 . - . ID=Physo138861.1;Parent=Physo138861;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . repeat_region 220294 220503 . ? . description=trf scaffold_67 . biological_region 222726 222731 0.999 - . logic_name=eponine scaffold_67 . repeat_region 222809 222832 . ? . description=trf scaffold_67 . biological_region 223395 223398 0.999 - . logic_name=eponine scaffold_67 . biological_region 224276 224279 0.999 + . logic_name=eponine scaffold_67 . repeat_region 224303 224322 . ? . description=trf scaffold_67 . biological_region 224490 224495 0.999 + . logic_name=eponine scaffold_67 . biological_region 226082 226083 0.999 + . logic_name=eponine scaffold_67 . repeat_region 226772 226779 . ? . description=dust scaffold_67 ensembl protein_coding_gene 222575 224803 . + . ID=Physo138862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670064;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 222575 224803 . + . ID=Physo138862;Parent=Physo138862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 222575 224803 . + 0 ID=Physo138862;Parent=Physo138862;rank=1 scaffold_67 . exon 222575 224803 . + . ID=Physo138862.1;Parent=Physo138862;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 225168 226754 . + . ID=Physo138863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670065;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 225168 226754 . + . ID=Physo138863;Parent=Physo138863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 225168 225454 . + 0 ID=Physo138863;Parent=Physo138863;rank=1 scaffold_67 . exon 225168 225454 . + . ID=Physo138863.1;Parent=Physo138863;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 225679 225721 . + 0 ID=Physo138863;Parent=Physo138863;rank=2 scaffold_67 . exon 225679 225721 . + . ID=Physo138863.2;Parent=Physo138863;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 225786 226754 . + 0 ID=Physo138863;Parent=Physo138863;rank=3 scaffold_67 . exon 225786 226754 . + . ID=Physo138863.3;Parent=Physo138863;constitutive=1;rank=3 scaffold_67 ensembl protein_coding_gene 230421 230999 . - . ID=Physo138864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670066;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 230421 230999 . - . ID=Physo138864;Parent=Physo138864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 230421 230999 . - 0 ID=Physo138864;Parent=Physo138864;rank=1 scaffold_67 . exon 230421 230999 . - . ID=Physo138864.1;Parent=Physo138864;constitutive=1;rank=1 scaffold_67 . repeat_region 239912 239919 . ? . description=dust scaffold_67 . biological_region 240340 240345 0.999 + . logic_name=eponine scaffold_67 . biological_region 242646 242650 0.999 + . logic_name=eponine scaffold_67 . biological_region 242823 242824 0.999 - . logic_name=eponine scaffold_67 . biological_region 243590 243591 0.999 + . logic_name=eponine scaffold_67 . repeat_region 249787 249840 . ? . description=trf scaffold_67 ensembl protein_coding_gene 241206 242120 . - . ID=Physo138865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670067;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 241206 242120 . - . ID=Physo138865;Parent=Physo138865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 241206 242120 . - 0 ID=Physo138865;Parent=Physo138865;rank=1 scaffold_67 . exon 241206 242120 . - . ID=Physo138865.1;Parent=Physo138865;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 245261 247558 . - . ID=Physo138866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670068;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 245261 247558 . - . ID=Physo138866;Parent=Physo138866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 245261 245290 . - 0 ID=Physo138866;Parent=Physo138866;rank=5 scaffold_67 . exon 245261 245290 . - . ID=Physo138866.5;Parent=Physo138866;constitutive=1;rank=5 scaffold_67 . CDS 245365 246199 . - 0 ID=Physo138866;Parent=Physo138866;rank=4 scaffold_67 . exon 245365 246199 . - . ID=Physo138866.4;Parent=Physo138866;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 246266 246676 . - 0 ID=Physo138866;Parent=Physo138866;rank=3 scaffold_67 . exon 246266 246676 . - . ID=Physo138866.3;Parent=Physo138866;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_67 . CDS 246710 247112 . - 0 ID=Physo138866;Parent=Physo138866;rank=2 scaffold_67 . exon 246710 247112 . - . ID=Physo138866.2;Parent=Physo138866;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . CDS 247141 247558 . - 0 ID=Physo138866;Parent=Physo138866;rank=1 scaffold_67 . exon 247141 247558 . - . ID=Physo138866.1;Parent=Physo138866;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . repeat_region 265745 265790 . ? . description=dust scaffold_67 . repeat_region 266487 267171 . ? . description=trf scaffold_67 ensembl protein_coding_gene 266155 267513 . - . ID=Physo138867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670069;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 266155 267513 . - . ID=Physo138867;Parent=Physo138867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 266155 267513 . - 0 ID=Physo138867;Parent=Physo138867;rank=1 scaffold_67 . exon 266155 267513 . - . ID=Physo138867.1;Parent=Physo138867;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 269096 269901 . - . ID=Physo138868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670070;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 269096 269901 . - . ID=Physo138868;Parent=Physo138868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 269096 269695 . - 0 ID=Physo138868;Parent=Physo138868;rank=2 scaffold_67 . exon 269096 269695 . - . ID=Physo138868.2;Parent=Physo138868;constitutive=1;rank=2 scaffold_67 . CDS 269770 269901 . - 0 ID=Physo138868;Parent=Physo138868;rank=1 scaffold_67 . exon 269770 269901 . - . ID=Physo138868.1;Parent=Physo138868;constitutive=1;rank=1 scaffold_67 . biological_region 270318 270321 0.999 - . logic_name=eponine scaffold_67 . biological_region 270602 270606 0.999 + . logic_name=eponine scaffold_67 . biological_region 270711 270713 0.999 - . logic_name=eponine scaffold_67 . biological_region 270947 270950 0.999 - . logic_name=eponine scaffold_67 . biological_region 271111 271116 0.999 + . logic_name=eponine scaffold_67 . biological_region 271112 271113 0.999 - . logic_name=eponine scaffold_67 . biological_region 271753 271753 0.999 + . logic_name=eponine scaffold_67 . biological_region 279385 279387 0.999 - . logic_name=eponine scaffold_67 . biological_region 279440 279446 0.999 + . logic_name=eponine scaffold_67 . biological_region 279537 279540 0.999 + . logic_name=eponine scaffold_67 . biological_region 279629 279631 0.999 + . logic_name=eponine scaffold_67 . biological_region 279719 279725 0.999 - . logic_name=eponine scaffold_67 . biological_region 279827 279833 0.999 + . logic_name=eponine scaffold_67 . biological_region 279835 279838 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 278850 280038 . - . ID=Physo109178;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670010;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 278850 280038 . - . ID=Physo109178;Parent=Physo109178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 278850 278958 . - . ID=Physo109178.2;Parent=Physo109178;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_67 . CDS 278908 278958 . - 0 ID=Physo109178;Parent=Physo109178;rank=2 scaffold_67 . CDS 278989 280038 . - 0 ID=Physo109178;Parent=Physo109178;rank=1 scaffold_67 . exon 278989 280038 . - . ID=Physo109178.1;Parent=Physo109178;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 270398 271393 . + . ID=Physo138869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670071;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 270398 271393 . + . ID=Physo138869;Parent=Physo138869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 270398 271393 . + 0 ID=Physo138869;Parent=Physo138869;rank=1 scaffold_67 . exon 270398 271393 . + . ID=Physo138869.1;Parent=Physo138869;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 276517 276819 . - . ID=Physo138870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670072;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 276517 276819 . - . ID=Physo138870;Parent=Physo138870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 276517 276819 . - 0 ID=Physo138870;Parent=Physo138870;rank=1 scaffold_67 . exon 276517 276819 . - . ID=Physo138870.1;Parent=Physo138870;constitutive=1;rank=1 scaffold_67 . repeat_region 281652 281689 . ? . description=trf scaffold_67 . repeat_region 282491 282534 . ? . description=trf scaffold_67 . repeat_region 282491 282586 . ? . description=dust scaffold_67 . repeat_region 282531 282555 . ? . description=trf scaffold_67 . repeat_region 282612 282651 . ? . description=trf scaffold_67 . repeat_region 284139 284147 . ? . description=dust scaffold_67 . repeat_region 286937 286990 . ? . description=trf scaffold_67 . repeat_region 287274 287354 . ? . description=trf scaffold_67 . repeat_region 287921 287931 . ? . description=dust scaffold_67 ensembl protein_coding_gene 280632 281459 . + . ID=Physo138872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670074;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 280632 281459 . + . ID=Physo138872;Parent=Physo138872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 280632 280794 . + . ID=Physo138872.1;Parent=Physo138872;constitutive=1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 280663 280794 . + 0 ID=Physo138872;Parent=Physo138872;rank=1 scaffold_67 . CDS 280860 281459 . + 0 ID=Physo138872;Parent=Physo138872;rank=2 scaffold_67 . exon 280860 281459 . + . ID=Physo138872.2;Parent=Physo138872;constitutive=1;rank=2 scaffold_67 ensembl protein_coding_gene 281594 284327 . - . ID=Physo138873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670075;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 281594 284327 . - . ID=Physo138873;Parent=Physo138873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 281594 281603 . - 0 ID=Physo138873;Parent=Physo138873;rank=7 scaffold_67 . exon 281594 281603 . - . ID=Physo138873.7;Parent=Physo138873;constitutive=1;ensembl_phase=2;rank=7 scaffold_67 . CDS 281640 281859 . - 0 ID=Physo138873;Parent=Physo138873;rank=6 scaffold_67 . exon 281640 281859 . - . ID=Physo138873.6;Parent=Physo138873;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_67 . CDS 281936 282481 . - 0 ID=Physo138873;Parent=Physo138873;rank=5 scaffold_67 . exon 281936 282481 . - . ID=Physo138873.5;Parent=Physo138873;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_67 . CDS 282598 282746 . - 0 ID=Physo138873;Parent=Physo138873;rank=4 scaffold_67 . exon 282598 282746 . - . ID=Physo138873.4;Parent=Physo138873;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 283261 283598 . - 0 ID=Physo138873;Parent=Physo138873;rank=3 scaffold_67 . exon 283261 283598 . - . ID=Physo138873.3;Parent=Physo138873;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 283797 284120 . - 0 ID=Physo138873;Parent=Physo138873;rank=2 scaffold_67 . exon 283797 284120 . - . ID=Physo138873.2;Parent=Physo138873;constitutive=1;rank=2 scaffold_67 . CDS 284202 284327 . - 0 ID=Physo138873;Parent=Physo138873;rank=1 scaffold_67 . exon 284202 284327 . - . ID=Physo138873.1;Parent=Physo138873;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 285689 287461 . + . ID=Physo138874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670076;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 285689 287461 . + . ID=Physo138874;Parent=Physo138874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 285689 287461 . + 0 ID=Physo138874;Parent=Physo138874;rank=1 scaffold_67 . exon 285689 287461 . + . ID=Physo138874.1;Parent=Physo138874;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 288299 289732 . - . ID=Physo138875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670077;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 288299 289732 . - . ID=Physo138875;Parent=Physo138875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 288299 289732 . - 0 ID=Physo138875;Parent=Physo138875;rank=1 scaffold_67 . exon 288299 289732 . - . ID=Physo138875.1;Parent=Physo138875;constitutive=1;rank=1 scaffold_67 . biological_region 291412 291416 0.999 + . logic_name=eponine scaffold_67 . biological_region 292024 292028 0.999 + . logic_name=eponine scaffold_67 . biological_region 293858 293860 0.999 - . logic_name=eponine scaffold_67 . biological_region 294031 294035 0.999 - . logic_name=eponine scaffold_67 . biological_region 294649 294654 0.999 + . logic_name=eponine scaffold_67 . biological_region 294878 294883 0.999 + . logic_name=eponine scaffold_67 ensembl protein_coding_gene 290597 291607 . - . ID=Physo138876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670078;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 290597 291607 . - . ID=Physo138876;Parent=Physo138876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 290597 290766 . - . ID=Physo138876.3;Parent=Physo138876;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_67 . CDS 290606 290766 . - 0 ID=Physo138876;Parent=Physo138876;rank=3 scaffold_67 . CDS 290907 290938 . - 0 ID=Physo138876;Parent=Physo138876;rank=2 scaffold_67 . exon 290907 290938 . - . ID=Physo138876.2;Parent=Physo138876;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 290958 291607 . - 0 ID=Physo138876;Parent=Physo138876;rank=1 scaffold_67 . exon 290958 291607 . - . ID=Physo138876.1;Parent=Physo138876;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 293444 294314 . + . ID=Physo138877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670079;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 293444 294314 . + . ID=Physo138877;Parent=Physo138877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 293444 293611 . + . ID=Physo138877.1;Parent=Physo138877;constitutive=1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 293474 293611 . + 0 ID=Physo138877;Parent=Physo138877;rank=1 scaffold_67 . CDS 293682 294305 . + 0 ID=Physo138877;Parent=Physo138877;rank=2 scaffold_67 . exon 293682 294314 . + . ID=Physo138877.2;Parent=Physo138877;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_67 ensembl protein_coding_gene 294514 299019 . + . ID=Physo138878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670080;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 294514 299019 . + . ID=Physo138878;Parent=Physo138878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 294514 299019 . + 0 ID=Physo138878;Parent=Physo138878;rank=1 scaffold_67 . exon 294514 299019 . + . ID=Physo138878.1;Parent=Physo138878;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 299177 300115 . - . ID=Physo138879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670081;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 299177 300115 . - . ID=Physo138879;Parent=Physo138879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 299177 300115 . - 0 ID=Physo138879;Parent=Physo138879;rank=1 scaffold_67 . exon 299177 300115 . - . ID=Physo138879.1;Parent=Physo138879;constitutive=1;rank=1 scaffold_67 . repeat_region 305376 305383 . ? . description=dust scaffold_67 ensembl protein_coding_gene 300796 301626 . + . ID=Physo138880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670082;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 300796 301626 . + . ID=Physo138880;Parent=Physo138880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 300796 300921 . + 0 ID=Physo138880;Parent=Physo138880;rank=1 scaffold_67 . exon 300796 300921 . + . ID=Physo138880.1;Parent=Physo138880;constitutive=1;rank=1 scaffold_67 . CDS 301000 301572 . + 0 ID=Physo138880;Parent=Physo138880;rank=2 scaffold_67 . exon 301000 301626 . + . ID=Physo138880.2;Parent=Physo138880;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_67 ensembl protein_coding_gene 301608 304905 . - . ID=Physo138881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670083;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 301608 304905 . - . ID=Physo138881;Parent=Physo138881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 301608 302298 . - . ID=Physo138881.5;Parent=Physo138881;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_67 . CDS 301675 302298 . - 0 ID=Physo138881;Parent=Physo138881;rank=5 scaffold_67 . CDS 302369 302537 . - 0 ID=Physo138881;Parent=Physo138881;rank=4 scaffold_67 . exon 302369 302537 . - . ID=Physo138881.4;Parent=Physo138881;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 302689 302723 . - 0 ID=Physo138881;Parent=Physo138881;rank=3 scaffold_67 . exon 302689 302723 . - . ID=Physo138881.3;Parent=Physo138881;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 302936 303187 . - 0 ID=Physo138881;Parent=Physo138881;rank=2 scaffold_67 . exon 302936 303187 . - . ID=Physo138881.2;Parent=Physo138881;constitutive=1;rank=2 scaffold_67 . CDS 304132 304905 . - 0 ID=Physo138881;Parent=Physo138881;rank=1 scaffold_67 . exon 304132 304905 . - . ID=Physo138881.1;Parent=Physo138881;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 305882 308203 . - . ID=Physo138882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670084;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 305882 308203 . - . ID=Physo138882;Parent=Physo138882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 305882 308203 . - 0 ID=Physo138882;Parent=Physo138882;rank=1 scaffold_67 . exon 305882 308203 . - . ID=Physo138882.1;Parent=Physo138882;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 308922 309767 . - . ID=Physo138883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670085;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 308922 309767 . - . ID=Physo138883;Parent=Physo138883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 308922 309449 . - 0 ID=Physo138883;Parent=Physo138883;rank=2 scaffold_67 . exon 308922 309449 . - . ID=Physo138883.2;Parent=Physo138883;constitutive=1;rank=2 scaffold_67 . CDS 309474 309767 . - 0 ID=Physo138883;Parent=Physo138883;rank=1 scaffold_67 . exon 309474 309767 . - . ID=Physo138883.1;Parent=Physo138883;constitutive=1;rank=1 scaffold_67 . repeat_region 310697 310759 . ? . description=trf scaffold_67 . repeat_region 311299 311338 . ? . description=trf scaffold_67 . biological_region 313451 313454 0.999 - . logic_name=eponine scaffold_67 . biological_region 313613 313617 0.999 - . logic_name=eponine scaffold_67 . biological_region 313655 313658 0.999 + . logic_name=eponine scaffold_67 . biological_region 314060 314063 0.999 + . logic_name=eponine scaffold_67 . biological_region 314083 314087 0.999 + . logic_name=eponine scaffold_67 . biological_region 315093 315095 0.999 + . logic_name=eponine scaffold_67 . biological_region 315294 315298 0.999 + . logic_name=eponine scaffold_67 . repeat_region 316034 316134 . ? . description=trf scaffold_67 . biological_region 317534 317537 0.999 + . logic_name=eponine scaffold_67 . repeat_region 317852 317906 . ? . description=trf scaffold_67 . biological_region 318106 318111 0.999 - . logic_name=eponine scaffold_67 . repeat_region 318474 318499 . ? . description=trf scaffold_67 . repeat_region 318569 318621 . ? . description=trf scaffold_67 . biological_region 319341 319345 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 313132 316195 . + . ID=Physo138884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670086;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 313132 316195 . + . ID=Physo138884;Parent=Physo138884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 313132 313460 . + 0 ID=Physo138884;Parent=Physo138884;rank=1 scaffold_67 . exon 313132 313460 . + . ID=Physo138884.1;Parent=Physo138884;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 313507 313858 . + 0 ID=Physo138884;Parent=Physo138884;rank=2 scaffold_67 . exon 313507 313858 . + . ID=Physo138884.2;Parent=Physo138884;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 313906 314079 . + 0 ID=Physo138884;Parent=Physo138884;rank=3 scaffold_67 . exon 313906 314079 . + . ID=Physo138884.3;Parent=Physo138884;constitutive=1;rank=3 scaffold_67 . CDS 314165 314347 . + 0 ID=Physo138884;Parent=Physo138884;rank=4 scaffold_67 . exon 314165 314347 . + . ID=Physo138884.4;Parent=Physo138884;constitutive=1;rank=4 scaffold_67 . CDS 314670 314835 . + 0 ID=Physo138884;Parent=Physo138884;rank=5 scaffold_67 . exon 314670 314835 . + . ID=Physo138884.5;Parent=Physo138884;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_67 . CDS 314949 316195 . + 0 ID=Physo138884;Parent=Physo138884;rank=6 scaffold_67 . exon 314949 316195 . + . ID=Physo138884.6;Parent=Physo138884;constitutive=1;ensembl_phase=1;rank=6 scaffold_67 . repeat_region 328325 328336 . ? . description=dust scaffold_67 ensembl protein_coding_gene 321051 322795 . + . ID=Physo138885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670087;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 321051 322795 . + . ID=Physo138885;Parent=Physo138885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 321051 321137 . + 0 ID=Physo138885;Parent=Physo138885;rank=1 scaffold_67 . exon 321051 321137 . + . ID=Physo138885.1;Parent=Physo138885;constitutive=1;rank=1 scaffold_67 . CDS 321167 321319 . + 0 ID=Physo138885;Parent=Physo138885;rank=2 scaffold_67 . exon 321167 321319 . + . ID=Physo138885.2;Parent=Physo138885;constitutive=1;rank=2 scaffold_67 . CDS 321350 321891 . + 0 ID=Physo138885;Parent=Physo138885;rank=3 scaffold_67 . exon 321350 321891 . + . ID=Physo138885.3;Parent=Physo138885;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 322193 322286 . + 0 ID=Physo138885;Parent=Physo138885;rank=4 scaffold_67 . exon 322193 322286 . + . ID=Physo138885.4;Parent=Physo138885;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 322367 322795 . + 0 ID=Physo138885;Parent=Physo138885;rank=5 scaffold_67 . exon 322367 322795 . + . ID=Physo138885.5;Parent=Physo138885;constitutive=1;rank=5 scaffold_67 ensembl protein_coding_gene 324141 325610 . - . ID=Physo138887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670089;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 324141 325610 . - . ID=Physo138887;Parent=Physo138887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 324141 325610 . - 0 ID=Physo138887;Parent=Physo138887;rank=1 scaffold_67 . exon 324141 325610 . - . ID=Physo138887.1;Parent=Physo138887;constitutive=1;rank=1 scaffold_67 . biological_region 330900 330902 0.999 + . logic_name=eponine scaffold_67 . biological_region 339337 339341 0.999 + . logic_name=eponine scaffold_67 . biological_region 339354 339358 0.999 - . logic_name=eponine scaffold_67 . biological_region 339379 339384 0.999 - . logic_name=eponine scaffold_67 . biological_region 339690 339696 0.999 + . logic_name=eponine scaffold_67 . biological_region 339704 339709 0.999 - . logic_name=eponine scaffold_67 . biological_region 339718 339724 0.999 + . logic_name=eponine scaffold_67 . biological_region 339727 339730 0.999 - . logic_name=eponine scaffold_67 . biological_region 339771 339776 0.999 - . logic_name=eponine scaffold_67 ensembl protein_coding_gene 330369 331200 . - . ID=Physo138888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670090;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 330369 331200 . - . ID=Physo138888;Parent=Physo138888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 330369 331193 . - 0 ID=Physo138888;Parent=Physo138888;rank=1 scaffold_67 . exon 330369 331200 . - . ID=Physo138888.1;Parent=Physo138888;constitutive=1;ensembl_phase=-1;rank=1 scaffold_67 ensembl protein_coding_gene 331685 334663 . - . ID=Physo138889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670091;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 331685 334663 . - . ID=Physo138889;Parent=Physo138889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 331685 334663 . - 0 ID=Physo138889;Parent=Physo138889;rank=1 scaffold_67 . exon 331685 334663 . - . ID=Physo138889.1;Parent=Physo138889;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 337563 338513 . - . ID=Physo138890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670092;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 337563 338513 . - . ID=Physo138890;Parent=Physo138890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 337563 338513 . - 0 ID=Physo138890;Parent=Physo138890;rank=1 scaffold_67 . exon 337563 338513 . - . ID=Physo138890.1;Parent=Physo138890;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 339376 340313 . + . ID=Physo138891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670093;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 339376 340313 . + . ID=Physo138891;Parent=Physo138891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 339376 339993 . + 0 ID=Physo138891;Parent=Physo138891;rank=1 scaffold_67 . exon 339376 339993 . + . ID=Physo138891.1;Parent=Physo138891;constitutive=1;rank=1 scaffold_67 . CDS 340014 340313 . + 0 ID=Physo138891;Parent=Physo138891;rank=2 scaffold_67 . repeat_region 346913 346952 . ? . description=trf scaffold_67 . exon 340014 340313 . + . ID=Physo138891.2;Parent=Physo138891;constitutive=1;rank=2 scaffold_67 ensembl protein_coding_gene 340449 344177 . - . ID=Physo138892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670094;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 340449 344177 . - . ID=Physo138892;Parent=Physo138892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 340449 340518 . - 0 ID=Physo138892;Parent=Physo138892;rank=4 scaffold_67 . exon 340449 340518 . - . ID=Physo138892.4;Parent=Physo138892;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 340602 341276 . - 0 ID=Physo138892;Parent=Physo138892;rank=3 scaffold_67 . exon 340602 341276 . - . ID=Physo138892.3;Parent=Physo138892;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_67 . CDS 341501 342283 . - 0 ID=Physo138892;Parent=Physo138892;rank=2 scaffold_67 . exon 341501 342283 . - . ID=Physo138892.2;Parent=Physo138892;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_67 . CDS 342532 344177 . - 0 ID=Physo138892;Parent=Physo138892;rank=1 scaffold_67 . exon 342532 344177 . - . ID=Physo138892.1;Parent=Physo138892;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 344327 344891 . + . ID=Physo138893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670095;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 344327 344891 . + . ID=Physo138893;Parent=Physo138893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 344327 344402 . + 0 ID=Physo138893;Parent=Physo138893;rank=1 scaffold_67 . exon 344327 344402 . + . ID=Physo138893.1;Parent=Physo138893;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 344485 344540 . + 0 ID=Physo138893;Parent=Physo138893;rank=2 scaffold_67 . exon 344485 344540 . + . ID=Physo138893.2;Parent=Physo138893;constitutive=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 344624 344727 . + 0 ID=Physo138893;Parent=Physo138893;rank=3 scaffold_67 . exon 344624 344727 . + . ID=Physo138893.3;Parent=Physo138893;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 344807 344891 . + 0 ID=Physo138893;Parent=Physo138893;rank=4 scaffold_67 . exon 344807 344891 . + . ID=Physo138893.4;Parent=Physo138893;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 ensembl protein_coding_gene 345705 348020 . - . ID=Physo138894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670096;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 345705 348020 . - . ID=Physo138894;Parent=Physo138894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 345705 347993 . - 0 ID=Physo138894;Parent=Physo138894;rank=1 scaffold_67 . exon 345705 348020 . - . ID=Physo138894.1;Parent=Physo138894;constitutive=1;ensembl_phase=-1;rank=1 scaffold_67 ensembl protein_coding_gene 348224 350251 . - . ID=Physo138895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670097;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 348224 350251 . - . ID=Physo138895;Parent=Physo138895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 348224 348769 . - 0 ID=Physo138895;Parent=Physo138895;rank=5 scaffold_67 . exon 348224 348769 . - . ID=Physo138895.5;Parent=Physo138895;constitutive=1;rank=5 scaffold_67 . CDS 348881 349111 . - 0 ID=Physo138895;Parent=Physo138895;rank=4 scaffold_67 . exon 348881 349111 . - . ID=Physo138895.4;Parent=Physo138895;constitutive=1;rank=4 scaffold_67 . CDS 349185 349394 . - 0 ID=Physo138895;Parent=Physo138895;rank=3 scaffold_67 . exon 349185 349394 . - . ID=Physo138895.3;Parent=Physo138895;constitutive=1;rank=3 scaffold_67 . CDS 349476 349578 . - 0 ID=Physo138895;Parent=Physo138895;rank=2 scaffold_67 . exon 349476 349578 . - . ID=Physo138895.2;Parent=Physo138895;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 349638 350251 . - 0 ID=Physo138895;Parent=Physo138895;rank=1 scaffold_67 . exon 349638 350251 . - . ID=Physo138895.1;Parent=Physo138895;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . biological_region 349891 349894 0.999 - . logic_name=eponine scaffold_67 . biological_region 350179 350185 0.999 + . logic_name=eponine scaffold_67 . biological_region 350253 350255 0.999 - . logic_name=eponine scaffold_67 . biological_region 350293 350293 0.999 - . logic_name=eponine scaffold_67 . biological_region 351361 351364 0.999 + . logic_name=eponine scaffold_67 . biological_region 352922 352924 0.999 - . logic_name=eponine scaffold_67 . biological_region 353289 353294 0.999 - . logic_name=eponine scaffold_67 . repeat_region 354128 354137 . ? . description=dust scaffold_67 . biological_region 354228 354230 0.999 + . logic_name=eponine scaffold_67 . biological_region 354273 354273 0.999 - . logic_name=eponine scaffold_67 . biological_region 354346 354349 0.999 - . logic_name=eponine scaffold_67 . repeat_region 356514 356607 . ? . description=dust scaffold_67 . repeat_region 356705 356815 . ? . description=dust scaffold_67 . repeat_region 357188 357243 . ? . description=dust scaffold_67 . repeat_region 357264 357333 . ? . description=dust scaffold_67 . repeat_region 357531 357538 . ? . description=dust scaffold_67 . repeat_region 357562 357631 . ? . description=dust scaffold_67 . repeat_region 357640 357665 . ? . description=dust scaffold_67 . repeat_region 357777 357807 . ? . description=dust scaffold_67 . repeat_region 357963 358025 . ? . description=dust scaffold_67 . repeat_region 359067 359093 . ? . description=dust scaffold_67 . repeat_region 359101 359164 . ? . description=dust scaffold_67 . repeat_region 359197 359287 . ? . description=dust scaffold_67 . repeat_region 359509 359578 . ? . description=dust scaffold_67 . repeat_region 359596 359637 . ? . description=dust scaffold_67 ensembl protein_coding_gene 354147 355034 . + . ID=Physo109179;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_670011;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 354147 355034 . + . ID=Physo109179;Parent=Physo109179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 354147 355034 . + 0 ID=Physo109179;Parent=Physo109179;rank=1 scaffold_67 . exon 354147 355034 . + . ID=Physo109179.1;Parent=Physo109179;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 351280 352913 . - . ID=Physo138896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670098;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 351280 352913 . - . ID=Physo138896;Parent=Physo138896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 351280 352746 . - 0 ID=Physo138896;Parent=Physo138896;rank=2 scaffold_67 . exon 351280 352746 . - . ID=Physo138896.2;Parent=Physo138896;constitutive=1;rank=2 scaffold_67 . CDS 352812 352913 . - 0 ID=Physo138896;Parent=Physo138896;rank=1 scaffold_67 . exon 352812 352913 . - . ID=Physo138896.1;Parent=Physo138896;constitutive=1;rank=1 scaffold_67 ensembl protein_coding_gene 355139 356316 . - . ID=Physo138898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670100;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 355139 356316 . - . ID=Physo138898;Parent=Physo138898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 355139 356316 . - . ID=Physo138898.1;Parent=Physo138898;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_67 . CDS 355141 356316 . - 0 ID=Physo138898;Parent=Physo138898;rank=1 scaffold_67 ensembl protein_coding_gene 358039 359466 . + . ID=Physo138899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670101;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 358039 359466 . + . ID=Physo138899;Parent=Physo138899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 358039 358051 . + 0 ID=Physo138899;Parent=Physo138899;rank=1 scaffold_67 . exon 358039 358051 . + . ID=Physo138899.1;Parent=Physo138899;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 358251 358404 . + 0 ID=Physo138899;Parent=Physo138899;rank=2 scaffold_67 . exon 358251 358404 . + . ID=Physo138899.2;Parent=Physo138899;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_67 . CDS 358475 358959 . + 0 ID=Physo138899;Parent=Physo138899;rank=3 scaffold_67 . exon 358475 358959 . + . ID=Physo138899.3;Parent=Physo138899;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_67 . CDS 359459 359466 . + 0 ID=Physo138899;Parent=Physo138899;rank=4 scaffold_67 . exon 359459 359466 . + . ID=Physo138899.4;Parent=Physo138899;constitutive=1;ensembl_phase=1;rank=4 scaffold_67 . repeat_region 364474 364538 . ? . description=trf scaffold_67 ensembl protein_coding_gene 362256 366174 . + . ID=Physo138900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670102;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 362256 366174 . + . ID=Physo138900;Parent=Physo138900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 362256 362304 . + 0 ID=Physo138900;Parent=Physo138900;rank=1 scaffold_67 . exon 362256 362304 . + . ID=Physo138900.1;Parent=Physo138900;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 362547 363080 . + 0 ID=Physo138900;Parent=Physo138900;rank=2 scaffold_67 . exon 362547 363080 . + . ID=Physo138900.2;Parent=Physo138900;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 363167 363171 . + 0 ID=Physo138900;Parent=Physo138900;rank=3 scaffold_67 . exon 363167 363171 . + . ID=Physo138900.3;Parent=Physo138900;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 . CDS 363355 363841 . + 0 ID=Physo138900;Parent=Physo138900;rank=4 scaffold_67 . exon 363355 363841 . + . ID=Physo138900.4;Parent=Physo138900;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_67 . CDS 363891 365415 . + 0 ID=Physo138900;Parent=Physo138900;rank=5 scaffold_67 . exon 363891 365415 . + . ID=Physo138900.5;Parent=Physo138900;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_67 . CDS 365684 366109 . + 0 ID=Physo138900;Parent=Physo138900;rank=6 scaffold_67 . exon 365684 366109 . + . ID=Physo138900.6;Parent=Physo138900;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_67 . CDS 366156 366174 . + 0 ID=Physo138900;Parent=Physo138900;rank=7 scaffold_67 . exon 366156 366174 . + . ID=Physo138900.7;Parent=Physo138900;constitutive=1;ensembl_phase=2;rank=7 scaffold_67 ensembl protein_coding_gene 366382 367549 . - . ID=Physo138901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670103;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 366382 367549 . - . ID=Physo138901;Parent=Physo138901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 366382 366495 . - . ID=Physo138901.3;Parent=Physo138901;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_67 . CDS 366483 366495 . - 0 ID=Physo138901;Parent=Physo138901;rank=3 scaffold_67 . CDS 366526 367320 . - 0 ID=Physo138901;Parent=Physo138901;rank=2 scaffold_67 . exon 366526 367320 . - . ID=Physo138901.2;Parent=Physo138901;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_67 . CDS 367512 367549 . - 0 ID=Physo138901;Parent=Physo138901;rank=1 scaffold_67 . exon 367512 367549 . - . ID=Physo138901.1;Parent=Physo138901;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 367913 368614 . + . ID=Physo138902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670104;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 367913 368614 . + . ID=Physo138902;Parent=Physo138902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 367913 367941 . + 0 ID=Physo138902;Parent=Physo138902;rank=1 scaffold_67 . exon 367913 367941 . + . ID=Physo138902.1;Parent=Physo138902;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 . CDS 368002 368233 . + 0 ID=Physo138902;Parent=Physo138902;rank=2 scaffold_67 . exon 368002 368233 . + . ID=Physo138902.2;Parent=Physo138902;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 368295 368356 . + 0 ID=Physo138902;Parent=Physo138902;rank=3 scaffold_67 . exon 368295 368356 . + . ID=Physo138902.3;Parent=Physo138902;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 368398 368614 . + 0 ID=Physo138902;Parent=Physo138902;rank=4 scaffold_67 . exon 368398 368614 . + . ID=Physo138902.4;Parent=Physo138902;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . repeat_region 371235 373048 . ? . description=dust scaffold_67 . biological_region 373651 373652 0.999 + . logic_name=eponine scaffold_67 . biological_region 374014 374015 0.999 + . logic_name=eponine scaffold_67 . biological_region 374160 374165 0.999 - . logic_name=eponine scaffold_67 . biological_region 375651 375652 0.999 - . logic_name=eponine scaffold_67 . repeat_region 378573 378622 . ? . description=dust scaffold_67 ensembl protein_coding_gene 373554 374099 . - . ID=Physo138903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670105;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 373554 374099 . - . ID=Physo138903;Parent=Physo138903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 373554 374099 . - 0 ID=Physo138903;Parent=Physo138903;rank=1 scaffold_67 . exon 373554 374099 . - . ID=Physo138903.1;Parent=Physo138903;constitutive=1;rank=1 scaffold_67 . repeat_region 381837 381861 . ? . description=trf scaffold_67 . repeat_region 390446 390495 . ? . description=dust scaffold_67 . repeat_region 391485 391642 . ? . description=dust scaffold_67 . repeat_region 393450 394520 . ? . description=dust scaffold_67 . repeat_region 395710 395808 . ? . description=dust scaffold_67 . biological_region 396015 396019 0.999 - . logic_name=eponine scaffold_67 . biological_region 396382 396390 0.999 - . logic_name=eponine scaffold_67 . repeat_region 396994 398068 . ? . description=dust scaffold_67 . repeat_region 399357 404752 . ? . description=dust scaffold_67 ensembl protein_coding_gene 390496 391484 . + . ID=Physo138904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670106;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 390496 391484 . + . ID=Physo138904;Parent=Physo138904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 390496 391484 . + . ID=Physo138904.1;Parent=Physo138904;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 390501 390995 . + 0 ID=Physo138904;Parent=Physo138904;rank=1 scaffold_67 ensembl protein_coding_gene 391855 393229 . + . ID=Physo138905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670107;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 391855 393229 . + . ID=Physo138905;Parent=Physo138905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 391855 392479 . + 0 ID=Physo138905;Parent=Physo138905;rank=1 scaffold_67 . exon 391855 392479 . + . ID=Physo138905.1;Parent=Physo138905;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_67 . CDS 392688 392822 . + 0 ID=Physo138905;Parent=Physo138905;rank=2 scaffold_67 . exon 392688 392822 . + . ID=Physo138905.2;Parent=Physo138905;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_67 . CDS 392859 393229 . + 0 ID=Physo138905;Parent=Physo138905;rank=3 scaffold_67 . exon 392859 393229 . + . ID=Physo138905.3;Parent=Physo138905;constitutive=1;ensembl_phase=1;rank=3 scaffold_67 ensembl protein_coding_gene 395836 396848 . - . ID=Physo138906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670108;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 395836 396848 . - . ID=Physo138906;Parent=Physo138906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . CDS 395836 395881 . - 0 ID=Physo138906;Parent=Physo138906;rank=4 scaffold_67 . exon 395836 395881 . - . ID=Physo138906.4;Parent=Physo138906;constitutive=1;ensembl_phase=2;rank=4 scaffold_67 . CDS 395923 395993 . - 0 ID=Physo138906;Parent=Physo138906;rank=3 scaffold_67 . exon 395923 395993 . - . ID=Physo138906.3;Parent=Physo138906;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_67 . CDS 396025 396196 . - 0 ID=Physo138906;Parent=Physo138906;rank=2 scaffold_67 . exon 396025 396196 . - . ID=Physo138906.2;Parent=Physo138906;constitutive=1;ensembl_phase=2;rank=2 scaffold_67 . CDS 396391 396848 . - 0 ID=Physo138906;Parent=Physo138906;rank=1 scaffold_67 . exon 396391 396848 . - . ID=Physo138906.1;Parent=Physo138906;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_67 ensembl protein_coding_gene 404839 406178 . - . ID=Physo138907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_670109;logic_name=jgi_physo1_1 scaffold_67 ensembl transcript 404839 406178 . - . ID=Physo138907;Parent=Physo138907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_67 . exon 404839 406178 . - . ID=Physo138907.1;Parent=Physo138907;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_67 . CDS 405075 406172 . - 0 ID=Physo138907;Parent=Physo138907;rank=1 ##gff-version 3 ##sequence-region scaffold_53 1 411924 scaffold_53 . repeat_region 1 3579 . ? . description=trf scaffold_53 . biological_region 130 133 0.999 + . logic_name=eponine scaffold_53 . repeat_region 3624 3780 . - . description=Gypsy-2-I_PI-int scaffold_53 . biological_region 5896 5898 0.999 - . logic_name=eponine scaffold_53 . biological_region 6002 6002 0.999 + . logic_name=eponine scaffold_53 . biological_region 6372 6374 0.999 + . logic_name=eponine scaffold_53 . repeat_region 6471 6515 . ? . description=trf scaffold_53 . biological_region 6494 6496 0.999 + . logic_name=eponine scaffold_53 . biological_region 6497 6503 0.999 - . logic_name=eponine scaffold_53 . biological_region 9718 9724 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 82 844 . - . ID=Physo118464;biotype=protein_coding;external_name=estExt_Genewise1.C_530046;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 82 844 . - . ID=Physo118464;Parent=Physo118464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 82 168 . - 0 ID=Physo118464;Parent=Physo118464;rank=5 scaffold_53 . exon 82 168 . - . ID=Physo118464.5;Parent=Physo118464;constitutive=1;rank=5 scaffold_53 . CDS 239 337 . - 0 ID=Physo118464;Parent=Physo118464;rank=4 scaffold_53 . exon 239 337 . - . ID=Physo118464.4;Parent=Physo118464;constitutive=1;rank=4 scaffold_53 . CDS 408 506 . - 0 ID=Physo118464;Parent=Physo118464;rank=3 scaffold_53 . exon 408 506 . - . ID=Physo118464.3;Parent=Physo118464;constitutive=1;rank=3 scaffold_53 . CDS 577 675 . - 0 ID=Physo118464;Parent=Physo118464;rank=2 scaffold_53 . exon 577 675 . - . ID=Physo118464.2;Parent=Physo118464;constitutive=1;rank=2 scaffold_53 . CDS 746 844 . - 0 ID=Physo118464;Parent=Physo118464;rank=1 scaffold_53 . exon 746 844 . - . ID=Physo118464.1;Parent=Physo118464;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 7740 8507 . - . ID=Physo137308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530001;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 7740 8507 . - . ID=Physo137308;Parent=Physo137308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 7740 8160 . - 0 ID=Physo137308;Parent=Physo137308;rank=2 scaffold_53 . exon 7740 8160 . - . ID=Physo137308.2;Parent=Physo137308;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 8203 8507 . - 0 ID=Physo137308;Parent=Physo137308;rank=1 scaffold_53 . exon 8203 8507 . - . ID=Physo137308.1;Parent=Physo137308;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . repeat_region 10553 10560 . ? . description=dust scaffold_53 . repeat_region 11064 11071 . ? . description=dust scaffold_53 . repeat_region 11697 11705 . ? . description=dust scaffold_53 . repeat_region 13727 13734 . ? . description=dust scaffold_53 . repeat_region 13848 13862 . ? . description=dust scaffold_53 . repeat_region 15414 15451 . ? . description=dust scaffold_53 ensembl protein_coding_gene 14594 32282 . + . ID=Physo137309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530002;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 14594 32282 . + . ID=Physo137309;Parent=Physo137309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 14594 14875 . + 0 ID=Physo137309;Parent=Physo137309;rank=1 scaffold_53 . exon 14594 14875 . + . ID=Physo137309.1;Parent=Physo137309;constitutive=1;rank=1 scaffold_53 . CDS 14946 15073 . + 0 ID=Physo137309;Parent=Physo137309;rank=2 scaffold_53 . exon 14946 15073 . + . ID=Physo137309.2;Parent=Physo137309;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_53 . CDS 15141 15409 . + 0 ID=Physo137309;Parent=Physo137309;rank=3 scaffold_53 . exon 15141 15409 . + . ID=Physo137309.3;Parent=Physo137309;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_53 . CDS 15485 15517 . + 0 ID=Physo137309;Parent=Physo137309;rank=4 scaffold_53 . exon 15485 15517 . + . ID=Physo137309.4;Parent=Physo137309;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_53 . CDS 16104 16118 . + 0 ID=Physo137309;Parent=Physo137309;rank=5 scaffold_53 . exon 16104 16118 . + . ID=Physo137309.5;Parent=Physo137309;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_53 . CDS 16264 16988 . + 0 ID=Physo137309;Parent=Physo137309;rank=6 scaffold_53 . exon 16264 16988 . + . ID=Physo137309.6;Parent=Physo137309;constitutive=1;ensembl_phase=1;rank=6 scaffold_53 . CDS 17257 17472 . + 0 ID=Physo137309;Parent=Physo137309;rank=7 scaffold_53 . exon 17257 17472 . + . ID=Physo137309.7;Parent=Physo137309;constitutive=1;rank=7 scaffold_53 . CDS 17493 18167 . + 0 ID=Physo137309;Parent=Physo137309;rank=8 scaffold_53 . exon 17493 18167 . + . ID=Physo137309.8;Parent=Physo137309;constitutive=1;rank=8 scaffold_53 . CDS 18261 18517 . + 0 ID=Physo137309;Parent=Physo137309;rank=9 scaffold_53 . exon 18261 18517 . + . ID=Physo137309.9;Parent=Physo137309;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_53 . CDS 18836 19530 . + 0 ID=Physo137309;Parent=Physo137309;rank=10 scaffold_53 . exon 18836 19530 . + . ID=Physo137309.10;Parent=Physo137309;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_53 . CDS 19992 20631 . + 0 ID=Physo137309;Parent=Physo137309;rank=11 scaffold_53 . CDS 20695 20951 . + 0 ID=Physo137309;Parent=Physo137309;rank=12 scaffold_53 . CDS 21012 21082 . + 0 ID=Physo137309;Parent=Physo137309;rank=13 scaffold_53 . CDS 21177 23279 . + 0 ID=Physo137309;Parent=Physo137309;rank=14 scaffold_53 . CDS 23353 23460 . + 0 ID=Physo137309;Parent=Physo137309;rank=15 scaffold_53 . CDS 23526 32282 . + 0 ID=Physo137309;Parent=Physo137309;rank=16 scaffold_53 . biological_region 19649 19656 0.999 - . logic_name=eponine scaffold_53 . biological_region 19706 19709 0.999 + . logic_name=eponine scaffold_53 . biological_region 19763 19765 0.999 - . logic_name=eponine scaffold_53 . biological_region 22680 22682 0.999 - . logic_name=eponine scaffold_53 . biological_region 23144 23146 0.999 + . logic_name=eponine scaffold_53 . biological_region 24259 24263 0.999 + . logic_name=eponine scaffold_53 . biological_region 25079 25085 0.999 - . logic_name=eponine scaffold_53 . biological_region 25084 25086 0.999 + . logic_name=eponine scaffold_53 . biological_region 25122 25123 0.999 - . logic_name=eponine scaffold_53 . biological_region 25405 25405 0.999 - . logic_name=eponine scaffold_53 . biological_region 26375 26376 0.999 - . logic_name=eponine scaffold_53 . biological_region 26381 26382 0.999 + . logic_name=eponine scaffold_53 . biological_region 27564 27565 0.999 + . logic_name=eponine scaffold_53 . biological_region 28136 28139 0.999 + . logic_name=eponine scaffold_53 . biological_region 28160 28167 0.999 + . logic_name=eponine scaffold_53 . biological_region 28196 28199 0.999 + . logic_name=eponine scaffold_53 . biological_region 28276 28278 0.999 + . logic_name=eponine scaffold_53 . exon 19992 20631 . + . ID=Physo137309.11;Parent=Physo137309;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_53 . exon 20695 20951 . + . ID=Physo137309.12;Parent=Physo137309;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_53 . exon 21012 21082 . + . ID=Physo137309.13;Parent=Physo137309;constitutive=1;ensembl_phase=1;rank=13 scaffold_53 . exon 21177 23279 . + . ID=Physo137309.14;Parent=Physo137309;constitutive=1;rank=14 scaffold_53 . exon 23353 23460 . + . ID=Physo137309.15;Parent=Physo137309;constitutive=1;rank=15 scaffold_53 . exon 23526 32282 . + . ID=Physo137309.16;Parent=Physo137309;constitutive=1;rank=16 scaffold_53 . repeat_region 32919 33125 . ? . description=trf scaffold_53 . repeat_region 33609 33617 . ? . description=dust scaffold_53 . repeat_region 36123 36131 . ? . description=dust scaffold_53 ensembl protein_coding_gene 14594 32282 . + . ID=Physo137309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530002;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 14594 32282 . + . ID=Physo137309;Parent=Physo137309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 14594 14875 . + 0 ID=Physo137309;Parent=Physo137309;rank=1 scaffold_53 . CDS 14946 15073 . + 0 ID=Physo137309;Parent=Physo137309;rank=2 scaffold_53 . CDS 15141 15409 . + 0 ID=Physo137309;Parent=Physo137309;rank=3 scaffold_53 . CDS 15485 15517 . + 0 ID=Physo137309;Parent=Physo137309;rank=4 scaffold_53 . CDS 16104 16118 . + 0 ID=Physo137309;Parent=Physo137309;rank=5 scaffold_53 . CDS 16264 16988 . + 0 ID=Physo137309;Parent=Physo137309;rank=6 scaffold_53 . CDS 17257 17472 . + 0 ID=Physo137309;Parent=Physo137309;rank=7 scaffold_53 . CDS 17493 18167 . + 0 ID=Physo137309;Parent=Physo137309;rank=8 scaffold_53 . CDS 18261 18517 . + 0 ID=Physo137309;Parent=Physo137309;rank=9 scaffold_53 . CDS 18836 19530 . + 0 ID=Physo137309;Parent=Physo137309;rank=10 scaffold_53 . CDS 19992 20631 . + 0 ID=Physo137309;Parent=Physo137309;rank=11 scaffold_53 . CDS 20695 20951 . + 0 ID=Physo137309;Parent=Physo137309;rank=12 scaffold_53 . CDS 21012 21082 . + 0 ID=Physo137309;Parent=Physo137309;rank=13 scaffold_53 . CDS 21177 23279 . + 0 ID=Physo137309;Parent=Physo137309;rank=14 scaffold_53 . CDS 23353 23460 . + 0 ID=Physo137309;Parent=Physo137309;rank=15 scaffold_53 . CDS 23526 32282 . + 0 ID=Physo137309;Parent=Physo137309;rank=16 scaffold_53 ensembl protein_coding_gene 32390 33536 . - . ID=Physo137310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530003;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 32390 33536 . - . ID=Physo137310;Parent=Physo137310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 32390 33536 . - . ID=Physo137310.1;Parent=Physo137310;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_53 . CDS 32589 33536 . - 0 ID=Physo137310;Parent=Physo137310;rank=1 scaffold_53 . biological_region 42687 42689 0.999 - . logic_name=eponine scaffold_53 . repeat_region 45392 45519 . + . description=(CAG)n scaffold_53 . biological_region 46644 46646 0.999 - . logic_name=eponine scaffold_53 . biological_region 46868 46871 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 39586 40161 . + . ID=Physo137311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530004;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 39586 40161 . + . ID=Physo137311;Parent=Physo137311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 39586 40161 . + 0 ID=Physo137311;Parent=Physo137311;rank=1 scaffold_53 . exon 39586 40161 . + . ID=Physo137311.1;Parent=Physo137311;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 48631 49520 . + . ID=Physo137312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530005;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 48631 49520 . + . ID=Physo137312;Parent=Physo137312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 48631 48688 . + 0 ID=Physo137312;Parent=Physo137312;rank=1 scaffold_53 . exon 48631 48688 . + . ID=Physo137312.1;Parent=Physo137312;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . CDS 49114 49520 . + 0 ID=Physo137312;Parent=Physo137312;rank=2 scaffold_53 . repeat_region 53818 53855 . ? . description=trf scaffold_53 . exon 49114 49520 . + . ID=Physo137312.2;Parent=Physo137312;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 ensembl protein_coding_gene 55656 56726 . + . ID=Physo137313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530006;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 55656 56726 . + . ID=Physo137313;Parent=Physo137313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 55656 56726 . + 0 ID=Physo137313;Parent=Physo137313;rank=1 scaffold_53 . exon 55656 56726 . + . ID=Physo137313.1;Parent=Physo137313;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 57120 64921 . + . ID=Physo157576;biotype=protein_coding;external_name=C_scaffold_53000001;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 57120 64921 . + . ID=Physo157576;Parent=Physo157576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 57120 57697 . + 0 ID=Physo157576;Parent=Physo157576;rank=1 scaffold_53 . exon 57120 57697 . + . ID=Physo157576.1;Parent=Physo157576;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . CDS 57779 58112 . + 0 ID=Physo157576;Parent=Physo157576;rank=2 scaffold_53 . exon 57779 58112 . + . ID=Physo157576.2;Parent=Physo157576;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 58505 58912 . + 0 ID=Physo157576;Parent=Physo157576;rank=3 scaffold_53 . exon 58505 58912 . + . ID=Physo157576.3;Parent=Physo157576;constitutive=1;rank=3 scaffold_53 . CDS 58934 59361 . + 0 ID=Physo157576;Parent=Physo157576;rank=4 scaffold_53 . CDS 59395 59443 . + 0 ID=Physo157576;Parent=Physo157576;rank=5 scaffold_53 . CDS 59582 59830 . + 0 ID=Physo157576;Parent=Physo157576;rank=6 scaffold_53 . CDS 59933 59998 . + 0 ID=Physo157576;Parent=Physo157576;rank=7 scaffold_53 . CDS 60188 60785 . + 0 ID=Physo157576;Parent=Physo157576;rank=8 scaffold_53 . CDS 60945 61126 . + 0 ID=Physo157576;Parent=Physo157576;rank=9 scaffold_53 . CDS 61265 63549 . + 0 ID=Physo157576;Parent=Physo157576;rank=10 scaffold_53 . CDS 63634 64921 . + 0 ID=Physo157576;Parent=Physo157576;rank=11 scaffold_53 . repeat_region 64964 64971 . ? . description=dust scaffold_53 . biological_region 65962 65963 0.999 + . logic_name=eponine scaffold_53 . biological_region 66384 66387 0.999 - . logic_name=eponine scaffold_53 . biological_region 68601 68603 0.999 - . logic_name=eponine scaffold_53 . biological_region 68656 68657 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 65092 66441 . - . ID=Physo137316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530009;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 65092 66441 . - . ID=Physo137316;Parent=Physo137316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 65092 66441 . - 0 ID=Physo137316;Parent=Physo137316;rank=1 scaffold_53 . exon 65092 66441 . - . ID=Physo137316.1;Parent=Physo137316;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 67158 67908 . - . ID=Physo137317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530010;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 67158 67908 . - . ID=Physo137317;Parent=Physo137317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 67158 67580 . - 0 ID=Physo137317;Parent=Physo137317;rank=2 scaffold_53 . exon 67158 67580 . - . ID=Physo137317.2;Parent=Physo137317;constitutive=1;rank=2 scaffold_53 . CDS 67837 67908 . - 0 ID=Physo137317;Parent=Physo137317;rank=1 scaffold_53 . exon 67837 67908 . - . ID=Physo137317.1;Parent=Physo137317;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 68379 74025 . + . ID=Physo137318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530011;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 68379 74025 . + . ID=Physo137318;Parent=Physo137318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 68379 73925 . + 0 ID=Physo137318;Parent=Physo137318;rank=1 scaffold_53 . exon 68379 74025 . + . ID=Physo137318.1;Parent=Physo137318;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_53 . exon 58934 59361 . + . ID=Physo157576.4;Parent=Physo157576;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_53 . exon 59395 59443 . + . ID=Physo157576.5;Parent=Physo157576;constitutive=1;ensembl_phase=2;rank=5 scaffold_53 . exon 59582 59830 . + . ID=Physo157576.6;Parent=Physo157576;constitutive=1;rank=6 scaffold_53 . exon 59933 59998 . + . ID=Physo157576.7;Parent=Physo157576;constitutive=1;rank=7 scaffold_53 . exon 60188 60785 . + . ID=Physo157576.8;Parent=Physo157576;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_53 . exon 60945 61126 . + . ID=Physo157576.9;Parent=Physo157576;constitutive=1;ensembl_phase=1;rank=9 scaffold_53 . exon 61265 63549 . + . ID=Physo157576.10;Parent=Physo157576;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_53 . exon 63634 64921 . + . ID=Physo157576.11;Parent=Physo157576;constitutive=1;ensembl_phase=2;rank=11 scaffold_53 ensembl protein_coding_gene 74218 79752 . + . ID=Physo137319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530012;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 74218 79752 . + . ID=Physo137319;Parent=Physo137319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 74218 79752 . + 0 ID=Physo137319;Parent=Physo137319;rank=1 scaffold_53 . exon 74218 79752 . + . ID=Physo137319.1;Parent=Physo137319;constitutive=1;rank=1 scaffold_53 . biological_region 79177 79178 0.999 - . logic_name=eponine scaffold_53 . biological_region 79990 79991 0.999 - . logic_name=eponine scaffold_53 . repeat_region 80122 80184 . ? . description=trf scaffold_53 . repeat_region 80656 80676 . ? . description=trf scaffold_53 . repeat_region 83562 83582 . ? . description=trf scaffold_53 . repeat_region 84836 84882 . ? . description=dust scaffold_53 . biological_region 85391 85394 0.999 + . logic_name=eponine scaffold_53 . biological_region 85476 85477 0.999 - . logic_name=eponine scaffold_53 . biological_region 86512 86515 0.999 + . logic_name=eponine scaffold_53 . biological_region 87131 87132 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 79900 84836 . - . ID=Physo137320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530013;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 79900 84836 . - . ID=Physo137320;Parent=Physo137320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 79900 82083 . - 0 ID=Physo137320;Parent=Physo137320;rank=4 scaffold_53 . exon 79900 82083 . - . ID=Physo137320.4;Parent=Physo137320;constitutive=1;rank=4 scaffold_53 . CDS 82148 82274 . - 0 ID=Physo137320;Parent=Physo137320;rank=3 scaffold_53 . exon 82148 82274 . - . ID=Physo137320.3;Parent=Physo137320;constitutive=1;ensembl_phase=2;rank=3 scaffold_53 . CDS 82351 84704 . - 0 ID=Physo137320;Parent=Physo137320;rank=2 scaffold_53 . exon 82351 84704 . - . ID=Physo137320.2;Parent=Physo137320;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_53 . CDS 84816 84836 . - 0 ID=Physo137320;Parent=Physo137320;rank=1 scaffold_53 . exon 84816 84836 . - . ID=Physo137320.1;Parent=Physo137320;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 85322 91327 . - . ID=Physo137321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530014;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 85322 91327 . - . ID=Physo137321;Parent=Physo137321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 85322 91327 . - 0 ID=Physo137321;Parent=Physo137321;rank=1 scaffold_53 . exon 85322 91327 . - . ID=Physo137321.1;Parent=Physo137321;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 91510 91857 . - . ID=Physo137322;biotype=protein_coding;description=PsAvh448 [Source:UniProtKB/TrEMBL%3BAcc:E0W589];external_name=estExt_fgenesh1_pg.C_530015;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 91510 91857 . - . ID=Physo137322;Parent=Physo137322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 91510 91857 . - 0 ID=Physo137322;Parent=Physo137322;rank=1 scaffold_53 . exon 91510 91857 . - . ID=Physo137322.1;Parent=Physo137322;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 96933 97790 . + . ID=Physo137323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530016;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 96933 97790 . + . ID=Physo137323;Parent=Physo137323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 96933 97790 . + 0 ID=Physo137323;Parent=Physo137323;rank=1 scaffold_53 . exon 96933 97790 . + . ID=Physo137323.1;Parent=Physo137323;constitutive=1;rank=1 scaffold_53 . repeat_region 98941 98949 . ? . description=dust scaffold_53 . repeat_region 99455 99462 . ? . description=dust scaffold_53 . biological_region 100816 100818 0.999 + . logic_name=eponine scaffold_53 . repeat_region 101617 101636 . ? . description=trf scaffold_53 . repeat_region 101763 101794 . ? . description=trf scaffold_53 . biological_region 104170 104174 0.999 - . logic_name=eponine scaffold_53 . biological_region 104206 104210 0.999 + . logic_name=eponine scaffold_53 . biological_region 104213 104218 0.999 - . logic_name=eponine scaffold_53 . biological_region 105132 105136 0.999 - . logic_name=eponine scaffold_53 . biological_region 105186 105193 0.999 + . logic_name=eponine scaffold_53 . biological_region 105769 105772 0.999 + . logic_name=eponine scaffold_53 . biological_region 106104 106113 0.999 + . logic_name=eponine scaffold_53 . biological_region 106119 106124 0.999 + . logic_name=eponine scaffold_53 . biological_region 106176 106177 0.999 + . logic_name=eponine scaffold_53 . biological_region 106177 106182 0.999 - . logic_name=eponine scaffold_53 . biological_region 106209 106211 0.999 + . logic_name=eponine scaffold_53 . biological_region 106233 106237 0.999 + . logic_name=eponine scaffold_53 . biological_region 106277 106279 0.999 - . logic_name=eponine scaffold_53 . biological_region 106282 106284 0.999 + . logic_name=eponine scaffold_53 . biological_region 106334 106336 0.999 + . logic_name=eponine scaffold_53 . biological_region 106356 106358 0.999 - . logic_name=eponine scaffold_53 . biological_region 106377 106380 0.999 - . logic_name=eponine scaffold_53 . repeat_region 106467 106487 . ? . description=dust scaffold_53 ensembl protein_coding_gene 104005 104355 . + . ID=Physo137324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530017;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 104005 104355 . + . ID=Physo137324;Parent=Physo137324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 104005 104355 . + 0 ID=Physo137324;Parent=Physo137324;rank=1 scaffold_53 . exon 104005 104355 . + . ID=Physo137324.1;Parent=Physo137324;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 104461 106413 . - . ID=Physo137325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530018;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 104461 106413 . - . ID=Physo137325;Parent=Physo137325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 104461 105817 . - . ID=Physo137325.2;Parent=Physo137325;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_53 . CDS 104633 105817 . - 0 ID=Physo137325;Parent=Physo137325;rank=2 scaffold_53 . CDS 105898 106413 . - 0 ID=Physo137325;Parent=Physo137325;rank=1 scaffold_53 . exon 105898 106413 . - . ID=Physo137325.1;Parent=Physo137325;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 106789 107874 . - . ID=Physo137326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530019;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 106789 107874 . - . ID=Physo137326;Parent=Physo137326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 106789 107057 . - 0 ID=Physo137326;Parent=Physo137326;rank=4 scaffold_53 . exon 106789 107057 . - . ID=Physo137326.4;Parent=Physo137326;constitutive=1;ensembl_phase=1;rank=4 scaffold_53 . CDS 107151 107350 . - 0 ID=Physo137326;Parent=Physo137326;rank=3 scaffold_53 . exon 107151 107350 . - . ID=Physo137326.3;Parent=Physo137326;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_53 . CDS 107421 107526 . - 0 ID=Physo137326;Parent=Physo137326;rank=2 scaffold_53 . exon 107421 107526 . - . ID=Physo137326.2;Parent=Physo137326;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_53 . CDS 107598 107874 . - 0 ID=Physo137326;Parent=Physo137326;rank=1 scaffold_53 . exon 107598 107874 . - . ID=Physo137326.1;Parent=Physo137326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 ensembl protein_coding_gene 108109 111267 . + . ID=Physo137327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530020;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 108109 111267 . + . ID=Physo137327;Parent=Physo137327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 108109 111267 . + 0 ID=Physo137327;Parent=Physo137327;rank=1 scaffold_53 . exon 108109 111267 . + . ID=Physo137327.1;Parent=Physo137327;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 111464 112272 . + . ID=Physo137328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530021;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 111464 112272 . + . ID=Physo137328;Parent=Physo137328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 111464 112189 . + 0 ID=Physo137328;Parent=Physo137328;rank=1 scaffold_53 . exon 111464 112272 . + . ID=Physo137328.1;Parent=Physo137328;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_53 ensembl protein_coding_gene 112459 113172 . - . ID=Physo137329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530022;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 112459 113172 . - . ID=Physo137329;Parent=Physo137329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 112459 113172 . - 0 ID=Physo137329;Parent=Physo137329;rank=1 scaffold_53 . exon 112459 113172 . - . ID=Physo137329.1;Parent=Physo137329;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 114274 115086 . + . ID=Physo137330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530023;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 114274 115086 . + . ID=Physo137330;Parent=Physo137330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 114274 114300 . + 0 ID=Physo137330;Parent=Physo137330;rank=1 scaffold_53 . exon 114274 114300 . + . ID=Physo137330.1;Parent=Physo137330;constitutive=1;rank=1 scaffold_53 . CDS 114601 115086 . + 0 ID=Physo137330;Parent=Physo137330;rank=2 scaffold_53 . exon 114601 115086 . + . ID=Physo137330.2;Parent=Physo137330;constitutive=1;rank=2 scaffold_53 ensembl protein_coding_gene 116576 117463 . + . ID=Physo137331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530024;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 116576 117463 . + . ID=Physo137331;Parent=Physo137331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 116576 117463 . + 0 ID=Physo137331;Parent=Physo137331;rank=1 scaffold_53 . exon 116576 117463 . + . ID=Physo137331.1;Parent=Physo137331;constitutive=1;rank=1 scaffold_53 . biological_region 117994 117999 0.999 + . logic_name=eponine scaffold_53 . biological_region 118002 118005 0.999 + . logic_name=eponine scaffold_53 . biological_region 118027 118028 0.999 + . logic_name=eponine scaffold_53 . repeat_region 118121 118164 . ? . description=trf scaffold_53 . biological_region 118173 118177 0.999 + . logic_name=eponine scaffold_53 . repeat_region 118187 118239 . ? . description=trf scaffold_53 . repeat_region 120474 120682 . ? . description=trf scaffold_53 . repeat_region 120474 120682 . ? . description=trf scaffold_53 . repeat_region 120474 120682 . ? . description=trf scaffold_53 . repeat_region 120667 120750 . ? . description=trf scaffold_53 . biological_region 122180 122185 0.999 + . logic_name=eponine scaffold_53 . biological_region 122275 122279 0.999 + . logic_name=eponine scaffold_53 . biological_region 123147 123153 0.999 - . logic_name=eponine scaffold_53 . repeat_region 124085 124095 . ? . description=dust scaffold_53 . repeat_region 126307 126366 . ? . description=dust scaffold_53 . repeat_region 126322 126353 . ? . description=trf scaffold_53 . biological_region 126869 126872 0.999 - . logic_name=eponine scaffold_53 . repeat_region 127187 127199 . ? . description=dust scaffold_53 ensembl protein_coding_gene 118015 118611 . - . ID=Physo137332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530025;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 118015 118611 . - . ID=Physo137332;Parent=Physo137332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 118015 118611 . - 0 ID=Physo137332;Parent=Physo137332;rank=1 scaffold_53 . exon 118015 118611 . - . ID=Physo137332.1;Parent=Physo137332;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 119516 120151 . + . ID=Physo137333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530026;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 119516 120151 . + . ID=Physo137333;Parent=Physo137333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 119516 120151 . + 0 ID=Physo137333;Parent=Physo137333;rank=1 scaffold_53 . exon 119516 120151 . + . ID=Physo137333.1;Parent=Physo137333;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 120380 121147 . - . ID=Physo137334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530027;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 120380 121147 . - . ID=Physo137334;Parent=Physo137334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 120380 121147 . - 0 ID=Physo137334;Parent=Physo137334;rank=1 scaffold_53 . exon 120380 121147 . - . ID=Physo137334.1;Parent=Physo137334;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 122121 123424 . - . ID=Physo137335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530028;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 122121 123424 . - . ID=Physo137335;Parent=Physo137335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 122121 122527 . - 0 ID=Physo137335;Parent=Physo137335;rank=3 scaffold_53 . exon 122121 122527 . - . ID=Physo137335.3;Parent=Physo137335;constitutive=1;ensembl_phase=1;rank=3 scaffold_53 . CDS 122596 122887 . - 0 ID=Physo137335;Parent=Physo137335;rank=2 scaffold_53 . exon 122596 122887 . - . ID=Physo137335.2;Parent=Physo137335;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_53 . CDS 123002 123424 . - 0 ID=Physo137335;Parent=Physo137335;rank=1 scaffold_53 . exon 123002 123424 . - . ID=Physo137335.1;Parent=Physo137335;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 125941 126957 . - . ID=Physo137336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530029;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 125941 126957 . - . ID=Physo137336;Parent=Physo137336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 125941 126957 . - 0 ID=Physo137336;Parent=Physo137336;rank=1 scaffold_53 . exon 125941 126957 . - . ID=Physo137336.1;Parent=Physo137336;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 128273 128851 . - . ID=Physo137337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530030;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 128273 128851 . - . ID=Physo137337;Parent=Physo137337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 128273 128851 . - . ID=Physo137337.1;Parent=Physo137337;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 128282 128827 . - 0 ID=Physo137337;Parent=Physo137337;rank=1 scaffold_53 ensembl protein_coding_gene 135826 136834 . + . ID=Physo137339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530032;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 135826 136834 . + . ID=Physo137339;Parent=Physo137339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 135826 136834 . + . ID=Physo137339.1;Parent=Physo137339;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 135840 136811 . + 0 ID=Physo137339;Parent=Physo137339;rank=1 scaffold_53 ensembl protein_coding_gene 136876 138519 . - . ID=Physo137340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530033;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 136876 138519 . - . ID=Physo137340;Parent=Physo137340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 136876 137096 . - . ID=Physo137340.4;Parent=Physo137340;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_53 . CDS 136948 137096 . - 0 ID=Physo137340;Parent=Physo137340;rank=4 scaffold_53 . CDS 137177 138065 . - 0 ID=Physo137340;Parent=Physo137340;rank=3 scaffold_53 . exon 137177 138065 . - . ID=Physo137340.3;Parent=Physo137340;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_53 . CDS 138184 138247 . - 0 ID=Physo137340;Parent=Physo137340;rank=2 scaffold_53 . CDS 138341 138513 . - 0 ID=Physo137340;Parent=Physo137340;rank=1 scaffold_53 ensembl protein_coding_gene 130286 133569 . + . ID=Physo157582;biotype=protein_coding;external_name=C_scaffold_53000007;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 130286 133569 . + . ID=Physo157582;Parent=Physo157582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 130286 130342 . + 0 ID=Physo157582;Parent=Physo157582;rank=1 scaffold_53 . exon 130286 130342 . + . ID=Physo157582.1;Parent=Physo157582;constitutive=1;rank=1 scaffold_53 . CDS 130685 130861 . + 0 ID=Physo157582;Parent=Physo157582;rank=2 scaffold_53 . exon 130685 130861 . + . ID=Physo157582.2;Parent=Physo157582;constitutive=1;rank=2 scaffold_53 . CDS 130892 130986 . + 0 ID=Physo157582;Parent=Physo157582;rank=3 scaffold_53 . exon 130892 130986 . + . ID=Physo157582.3;Parent=Physo157582;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_53 . CDS 131048 131514 . + 0 ID=Physo157582;Parent=Physo157582;rank=4 scaffold_53 . exon 131048 131514 . + . ID=Physo157582.4;Parent=Physo157582;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_53 . CDS 131749 131898 . + 0 ID=Physo157582;Parent=Physo157582;rank=5 scaffold_53 . exon 131749 131898 . + . ID=Physo157582.5;Parent=Physo157582;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_53 . CDS 131995 132176 . + 0 ID=Physo157582;Parent=Physo157582;rank=6 scaffold_53 . exon 131995 132176 . + . ID=Physo157582.6;Parent=Physo157582;constitutive=1;ensembl_phase=1;rank=6 scaffold_53 . CDS 132244 132373 . + 0 ID=Physo157582;Parent=Physo157582;rank=7 scaffold_53 . exon 132244 132373 . + . ID=Physo157582.7;Parent=Physo157582;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_53 . CDS 132880 133201 . + 0 ID=Physo157582;Parent=Physo157582;rank=8 scaffold_53 . exon 132880 133201 . + . ID=Physo157582.8;Parent=Physo157582;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_53 . CDS 133253 133370 . + 0 ID=Physo157582;Parent=Physo157582;rank=9 scaffold_53 . exon 133253 133370 . + . ID=Physo157582.9;Parent=Physo157582;constitutive=1;ensembl_phase=2;rank=9 scaffold_53 . CDS 133459 133569 . + 0 ID=Physo157582;Parent=Physo157582;rank=10 scaffold_53 . exon 133459 133569 . + . ID=Physo157582.10;Parent=Physo157582;constitutive=1;rank=10 scaffold_53 ensembl protein_coding_gene 133662 135512 . - . ID=Physo157583;biotype=protein_coding;external_name=C_scaffold_53000008;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 133662 135512 . - . ID=Physo157583;Parent=Physo157583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 133662 133696 . - 0 ID=Physo157583;Parent=Physo157583;rank=7 scaffold_53 . exon 133662 133696 . - . ID=Physo157583.7;Parent=Physo157583;constitutive=1;ensembl_phase=1;rank=7 scaffold_53 . CDS 133745 134168 . - 0 ID=Physo157583;Parent=Physo157583;rank=6 scaffold_53 . exon 133745 134168 . - . ID=Physo157583.6;Parent=Physo157583;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_53 . CDS 134242 134346 . - 0 ID=Physo157583;Parent=Physo157583;rank=5 scaffold_53 . exon 134242 134346 . - . ID=Physo157583.5;Parent=Physo157583;constitutive=1;rank=5 scaffold_53 . CDS 134456 134971 . - 0 ID=Physo157583;Parent=Physo157583;rank=4 scaffold_53 . exon 134456 134971 . - . ID=Physo157583.4;Parent=Physo157583;constitutive=1;rank=4 scaffold_53 . CDS 135056 135270 . - 0 ID=Physo157583;Parent=Physo157583;rank=3 scaffold_53 . exon 135056 135270 . - . ID=Physo157583.3;Parent=Physo157583;constitutive=1;ensembl_phase=1;rank=3 scaffold_53 . CDS 135347 135384 . - 0 ID=Physo157583;Parent=Physo157583;rank=2 scaffold_53 . exon 135347 135384 . - . ID=Physo157583.2;Parent=Physo157583;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 135472 135512 . - 0 ID=Physo157583;Parent=Physo157583;rank=1 scaffold_53 . exon 135472 135512 . - . ID=Physo157583.1;Parent=Physo157583;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . biological_region 137415 137417 0.999 - . logic_name=eponine scaffold_53 . repeat_region 138297 138310 . ? . description=dust scaffold_53 . biological_region 140810 140816 0.999 + . logic_name=eponine scaffold_53 . biological_region 140817 140823 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 140718 142272 . + . ID=Physo109019;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_530001;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 140718 142272 . + . ID=Physo109019;Parent=Physo109019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 140718 140738 . + 0 ID=Physo109019;Parent=Physo109019;rank=1 scaffold_53 . exon 140718 140738 . + . ID=Physo109019.1;Parent=Physo109019;constitutive=1;rank=1 scaffold_53 . CDS 140811 140907 . + 0 ID=Physo109019;Parent=Physo109019;rank=2 scaffold_53 . exon 140811 140907 . + . ID=Physo109019.2;Parent=Physo109019;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_53 . CDS 140984 142272 . + 0 ID=Physo109019;Parent=Physo109019;rank=3 scaffold_53 . exon 140984 142272 . + . ID=Physo109019.3;Parent=Physo109019;constitutive=1;ensembl_phase=1;rank=3 scaffold_53 . exon 138184 138247 . - . ID=Physo137340.2;Parent=Physo137340;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . exon 138341 138519 . - . ID=Physo137340.1;Parent=Physo137340;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_53 ensembl protein_coding_gene 142534 148896 . + . ID=Physo137342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530035;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 142534 148896 . + . ID=Physo137342;Parent=Physo137342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 142534 148896 . + 0 ID=Physo137342;Parent=Physo137342;rank=1 scaffold_53 . exon 142534 148896 . + . ID=Physo137342.1;Parent=Physo137342;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 150741 153102 . + . ID=Physo137343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530036;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 150741 153102 . + . ID=Physo137343;Parent=Physo137343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 150741 152011 . + 0 ID=Physo137343;Parent=Physo137343;rank=1 scaffold_53 . exon 150741 152011 . + . ID=Physo137343.1;Parent=Physo137343;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . CDS 152163 153102 . + 0 ID=Physo137343;Parent=Physo137343;rank=2 scaffold_53 . exon 152163 153102 . + . ID=Physo137343.2;Parent=Physo137343;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 ensembl protein_coding_gene 153427 154851 . + . ID=Physo137344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530037;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 153427 154851 . + . ID=Physo137344;Parent=Physo137344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 153427 154851 . + 0 ID=Physo137344;Parent=Physo137344;rank=1 scaffold_53 . exon 153427 154851 . + . ID=Physo137344.1;Parent=Physo137344;constitutive=1;rank=1 scaffold_53 . biological_region 164709 164714 0.999 + . logic_name=eponine scaffold_53 . biological_region 164726 164730 0.999 - . logic_name=eponine scaffold_53 . biological_region 164768 164772 0.999 - . logic_name=eponine scaffold_53 . biological_region 164781 164784 0.999 + . logic_name=eponine scaffold_53 . biological_region 164802 164811 0.999 - . logic_name=eponine scaffold_53 . biological_region 164825 164827 0.999 + . logic_name=eponine scaffold_53 . biological_region 164907 164914 0.999 - . logic_name=eponine scaffold_53 . biological_region 165523 165525 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 164523 165842 . + . ID=Physo109020;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_530002;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 164523 165842 . + . ID=Physo109020;Parent=Physo109020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 164523 164594 . + 0 ID=Physo109020;Parent=Physo109020;rank=1 scaffold_53 . exon 164523 164594 . + . ID=Physo109020.1;Parent=Physo109020;constitutive=1;rank=1 scaffold_53 . CDS 164634 165842 . + 0 ID=Physo109020;Parent=Physo109020;rank=2 scaffold_53 . exon 164634 165842 . + . ID=Physo109020.2;Parent=Physo109020;constitutive=1;rank=2 scaffold_53 ensembl protein_coding_gene 159475 161704 . + . ID=Physo137345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530038;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 159475 161704 . + . ID=Physo137345;Parent=Physo137345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 159475 160243 . + 0 ID=Physo137345;Parent=Physo137345;rank=1 scaffold_53 . exon 159475 160243 . + . ID=Physo137345.1;Parent=Physo137345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . CDS 160308 160751 . + 0 ID=Physo137345;Parent=Physo137345;rank=2 scaffold_53 . exon 160308 160751 . + . ID=Physo137345.2;Parent=Physo137345;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 160978 161288 . + 0 ID=Physo137345;Parent=Physo137345;rank=3 scaffold_53 . exon 160978 161288 . + . ID=Physo137345.3;Parent=Physo137345;constitutive=1;ensembl_phase=1;rank=3 scaffold_53 . CDS 161394 161524 . + 0 ID=Physo137345;Parent=Physo137345;rank=4 scaffold_53 . exon 161394 161524 . + . ID=Physo137345.4;Parent=Physo137345;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_53 . CDS 161611 161704 . + 0 ID=Physo137345;Parent=Physo137345;rank=5 scaffold_53 . exon 161611 161704 . + . ID=Physo137345.5;Parent=Physo137345;constitutive=1;ensembl_phase=2;rank=5 scaffold_53 ensembl protein_coding_gene 163017 164357 . - . ID=Physo137346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530039;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 163017 164357 . - . ID=Physo137346;Parent=Physo137346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 163017 164357 . - 0 ID=Physo137346;Parent=Physo137346;rank=1 scaffold_53 . exon 163017 164357 . - . ID=Physo137346.1;Parent=Physo137346;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 169607 170696 . + . ID=Physo137348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530041;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 169607 170696 . + . ID=Physo137348;Parent=Physo137348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 169607 170696 . + . ID=Physo137348.1;Parent=Physo137348;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 169639 170613 . + 0 ID=Physo137348;Parent=Physo137348;rank=1 scaffold_53 ensembl protein_coding_gene 172378 173470 . + . ID=Physo137349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530042;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 172378 173470 . + . ID=Physo137349;Parent=Physo137349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 172378 173470 . + . ID=Physo137349.1;Parent=Physo137349;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 172430 173428 . + 0 ID=Physo137349;Parent=Physo137349;rank=1 scaffold_53 ensembl protein_coding_gene 174375 175315 . + . ID=Physo137350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530043;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 174375 175315 . + . ID=Physo137350;Parent=Physo137350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 174375 174724 . + . ID=Physo137350.1;Parent=Physo137350;constitutive=1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 174377 174724 . + 0 ID=Physo137350;Parent=Physo137350;rank=1 scaffold_53 . CDS 174767 174925 . + 0 ID=Physo137350;Parent=Physo137350;rank=2 scaffold_53 . exon 174767 174925 . + . ID=Physo137350.2;Parent=Physo137350;constitutive=1;rank=2 scaffold_53 . CDS 175133 175300 . + 0 ID=Physo137350;Parent=Physo137350;rank=3 scaffold_53 . exon 175133 175315 . + . ID=Physo137350.3;Parent=Physo137350;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_53 ensembl protein_coding_gene 175943 176854 . + . ID=Physo137351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530044;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 175943 176854 . + . ID=Physo137351;Parent=Physo137351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 175943 176854 . + 0 ID=Physo137351;Parent=Physo137351;rank=1 scaffold_53 . exon 175943 176854 . + . ID=Physo137351.1;Parent=Physo137351;constitutive=1;rank=1 scaffold_53 . biological_region 177439 177443 0.999 + . logic_name=eponine scaffold_53 . biological_region 177459 177460 0.999 + . logic_name=eponine scaffold_53 . biological_region 177611 177613 0.999 - . logic_name=eponine scaffold_53 . repeat_region 178024 178031 . ? . description=dust scaffold_53 . biological_region 178229 178229 0.999 - . logic_name=eponine scaffold_53 . biological_region 180204 180208 0.999 + . logic_name=eponine scaffold_53 . repeat_region 180263 180295 . ? . description=dust scaffold_53 . biological_region 180327 180328 0.999 - . logic_name=eponine scaffold_53 . biological_region 180327 180334 0.999 + . logic_name=eponine scaffold_53 . biological_region 180347 180350 0.999 - . logic_name=eponine scaffold_53 . biological_region 180387 180389 0.999 + . logic_name=eponine scaffold_53 . biological_region 180402 180404 0.999 + . logic_name=eponine scaffold_53 . biological_region 180761 180768 0.999 - . logic_name=eponine scaffold_53 . biological_region 185717 185721 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 176863 178338 . - . ID=Physo137352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530045;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 176863 178338 . - . ID=Physo137352;Parent=Physo137352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 176863 177733 . - . ID=Physo137352.3;Parent=Physo137352;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_53 . CDS 176979 177733 . - 0 ID=Physo137352;Parent=Physo137352;rank=3 scaffold_53 . CDS 177825 177966 . - 0 ID=Physo137352;Parent=Physo137352;rank=2 scaffold_53 . exon 177825 177966 . - . ID=Physo137352.2;Parent=Physo137352;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_53 . CDS 178048 178338 . - 0 ID=Physo137352;Parent=Physo137352;rank=1 scaffold_53 . exon 178048 178338 . - . ID=Physo137352.1;Parent=Physo137352;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 178522 179935 . - . ID=Physo137353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530046;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 178522 179935 . - . ID=Physo137353;Parent=Physo137353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 178522 178831 . - 0 ID=Physo137353;Parent=Physo137353;rank=3 scaffold_53 . exon 178522 178831 . - . ID=Physo137353.3;Parent=Physo137353;constitutive=1;ensembl_phase=2;rank=3 scaffold_53 . CDS 178902 179242 . - 0 ID=Physo137353;Parent=Physo137353;rank=2 scaffold_53 . exon 178902 179242 . - . ID=Physo137353.2;Parent=Physo137353;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_53 . CDS 179318 179935 . - 0 ID=Physo137353;Parent=Physo137353;rank=1 scaffold_53 . exon 179318 179935 . - . ID=Physo137353.1;Parent=Physo137353;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 180242 182436 . + . ID=Physo137354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530047;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 180242 182436 . + . ID=Physo137354;Parent=Physo137354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 180242 182329 . + 0 ID=Physo137354;Parent=Physo137354;rank=1 scaffold_53 . exon 180242 182436 . + . ID=Physo137354.1;Parent=Physo137354;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_53 ensembl protein_coding_gene 184597 186222 . - . ID=Physo137355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530048;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 184597 186222 . - . ID=Physo137355;Parent=Physo137355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 184597 185181 . - 0 ID=Physo137355;Parent=Physo137355;rank=2 scaffold_53 . exon 184597 185181 . - . ID=Physo137355.2;Parent=Physo137355;constitutive=1;rank=2 scaffold_53 . CDS 185389 186222 . - 0 ID=Physo137355;Parent=Physo137355;rank=1 scaffold_53 . exon 185389 186222 . - . ID=Physo137355.1;Parent=Physo137355;constitutive=1;rank=1 scaffold_53 . repeat_region 187780 187814 . ? . description=trf scaffold_53 ensembl protein_coding_gene 190753 192985 . - . ID=Physo137356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530049;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 190753 192985 . - . ID=Physo137356;Parent=Physo137356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 190753 192821 . - 0 ID=Physo137356;Parent=Physo137356;rank=2 scaffold_53 . exon 190753 192821 . - . ID=Physo137356.2;Parent=Physo137356;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 192898 192985 . - 0 ID=Physo137356;Parent=Physo137356;rank=1 scaffold_53 . exon 192898 192985 . - . ID=Physo137356.1;Parent=Physo137356;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . biological_region 197451 197459 0.999 - . logic_name=eponine scaffold_53 . biological_region 197470 197474 0.999 - . logic_name=eponine scaffold_53 . biological_region 199283 199283 0.999 - . logic_name=eponine scaffold_53 . biological_region 199318 199318 0.999 - . logic_name=eponine scaffold_53 . biological_region 199526 199530 0.999 + . logic_name=eponine scaffold_53 . repeat_region 199753 199760 . ? . description=dust scaffold_53 . repeat_region 201623 201634 . ? . description=dust scaffold_53 . biological_region 202901 202905 0.999 + . logic_name=eponine scaffold_53 . repeat_region 203260 203268 . ? . description=dust scaffold_53 . biological_region 204472 204475 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 197278 199671 . + . ID=Physo137357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530050;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 197278 199671 . + . ID=Physo137357;Parent=Physo137357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 197278 199671 . + 0 ID=Physo137357;Parent=Physo137357;rank=1 scaffold_53 . exon 197278 199671 . + . ID=Physo137357.1;Parent=Physo137357;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 199998 201428 . + . ID=Physo137358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530051;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 199998 201428 . + . ID=Physo137358;Parent=Physo137358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 199998 201428 . + 0 ID=Physo137358;Parent=Physo137358;rank=1 scaffold_53 . exon 199998 201428 . + . ID=Physo137358.1;Parent=Physo137358;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 201663 203224 . - . ID=Physo137359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530052;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 201663 203224 . - . ID=Physo137359;Parent=Physo137359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 201663 201951 . - 0 ID=Physo137359;Parent=Physo137359;rank=4 scaffold_53 . exon 201663 201951 . - . ID=Physo137359.4;Parent=Physo137359;constitutive=1;ensembl_phase=2;rank=4 scaffold_53 . CDS 202014 202144 . - 0 ID=Physo137359;Parent=Physo137359;rank=3 scaffold_53 . exon 202014 202144 . - . ID=Physo137359.3;Parent=Physo137359;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_53 . CDS 202208 202455 . - 0 ID=Physo137359;Parent=Physo137359;rank=2 scaffold_53 . exon 202208 202455 . - . ID=Physo137359.2;Parent=Physo137359;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 202540 203224 . - 0 ID=Physo137359;Parent=Physo137359;rank=1 scaffold_53 . exon 202540 203224 . - . ID=Physo137359.1;Parent=Physo137359;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 ensembl protein_coding_gene 204387 206003 . + . ID=Physo137360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530053;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 204387 206003 . + . ID=Physo137360;Parent=Physo137360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 204387 206003 . + 0 ID=Physo137360;Parent=Physo137360;rank=1 scaffold_53 . exon 204387 206003 . + . ID=Physo137360.1;Parent=Physo137360;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 207954 208538 . - . ID=Physo137361;biotype=protein_coding;description=PsAvh233 [Source:UniProtKB/TrEMBL%3BAcc:E0W590];external_name=estExt_fgenesh1_pg.C_530054;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 207954 208538 . - . ID=Physo137361;Parent=Physo137361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 207954 208538 . - 0 ID=Physo137361;Parent=Physo137361;rank=1 scaffold_53 . exon 207954 208538 . - . ID=Physo137361.1;Parent=Physo137361;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 215713 218564 . - . ID=Physo157585;biotype=protein_coding;external_name=C_scaffold_53000010;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 215713 218564 . - . ID=Physo157585;Parent=Physo157585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 215713 216532 . - 0 ID=Physo157585;Parent=Physo157585;rank=6 scaffold_53 . exon 215713 216532 . - . ID=Physo157585.6;Parent=Physo157585;constitutive=1;ensembl_phase=2;rank=6 scaffold_53 . CDS 216586 216877 . - 0 ID=Physo157585;Parent=Physo157585;rank=5 scaffold_53 . CDS 216982 217147 . - 0 ID=Physo157585;Parent=Physo157585;rank=4 scaffold_53 . CDS 217493 217786 . - 0 ID=Physo157585;Parent=Physo157585;rank=3 scaffold_53 . CDS 217854 218112 . - 0 ID=Physo157585;Parent=Physo157585;rank=2 scaffold_53 . CDS 218140 218564 . - 0 ID=Physo157585;Parent=Physo157585;rank=1 scaffold_53 . repeat_region 217334 217342 . ? . description=dust scaffold_53 . biological_region 217967 217970 0.999 + . logic_name=eponine scaffold_53 . biological_region 218047 218048 0.999 + . logic_name=eponine scaffold_53 . biological_region 218391 218396 0.999 + . logic_name=eponine scaffold_53 . biological_region 218431 218436 0.999 - . logic_name=eponine scaffold_53 . biological_region 218441 218444 0.999 - . logic_name=eponine scaffold_53 . biological_region 218450 218453 0.999 + . logic_name=eponine scaffold_53 . biological_region 218460 218464 0.999 - . logic_name=eponine scaffold_53 . biological_region 218546 218549 0.999 - . logic_name=eponine scaffold_53 . repeat_region 223711 223718 . ? . description=dust scaffold_53 . repeat_region 224733 224742 . ? . description=dust scaffold_53 . exon 216586 216877 . - . ID=Physo157585.5;Parent=Physo157585;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_53 . exon 216982 217147 . - . ID=Physo157585.4;Parent=Physo157585;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_53 . exon 217493 217786 . - . ID=Physo157585.3;Parent=Physo157585;constitutive=1;rank=3 scaffold_53 . exon 217854 218112 . - . ID=Physo157585.2;Parent=Physo157585;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . exon 218140 218564 . - . ID=Physo157585.1;Parent=Physo157585;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . repeat_region 228773 228884 . ? . description=trf scaffold_53 . repeat_region 229283 229314 . ? . description=trf scaffold_53 . repeat_region 230280 230393 . ? . description=trf scaffold_53 . repeat_region 233195 233250 . ? . description=trf scaffold_53 . repeat_region 233284 233345 . ? . description=trf scaffold_53 ensembl protein_coding_gene 229773 230616 . - . ID=Physo109021;biotype=protein_coding;description=PsAvh389Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84XT6];external_name=estExt_fgenesh1_pm.C_530003;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 229773 230616 . - . ID=Physo109021;Parent=Physo109021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 229773 230616 . - . ID=Physo109021.1;Parent=Physo109021;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 229884 230549 . - 0 ID=Physo109021;Parent=Physo109021;rank=1 scaffold_53 ensembl protein_coding_gene 228676 229247 . - . ID=Physo137363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530056;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 228676 229247 . - . ID=Physo137363;Parent=Physo137363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 228676 228837 . - 0 ID=Physo137363;Parent=Physo137363;rank=2 scaffold_53 . exon 228676 228837 . - . ID=Physo137363.2;Parent=Physo137363;constitutive=1;rank=2 scaffold_53 . CDS 228918 229247 . - 0 ID=Physo137363;Parent=Physo137363;rank=1 scaffold_53 . exon 228918 229247 . - . ID=Physo137363.1;Parent=Physo137363;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 230898 231710 . + . ID=Physo137365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530058;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 230898 231710 . + . ID=Physo137365;Parent=Physo137365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 230898 231710 . + . ID=Physo137365.1;Parent=Physo137365;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 230918 231610 . + 0 ID=Physo137365;Parent=Physo137365;rank=1 scaffold_53 ensembl protein_coding_gene 231951 233495 . - . ID=Physo137366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530059;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 231951 233495 . - . ID=Physo137366;Parent=Physo137366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 231951 233495 . - 0 ID=Physo137366;Parent=Physo137366;rank=1 scaffold_53 . exon 231951 233495 . - . ID=Physo137366.1;Parent=Physo137366;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 234604 242385 . - . ID=Physo137367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530060;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 234604 242385 . - . ID=Physo137367;Parent=Physo137367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 234604 237864 . - 0 ID=Physo137367;Parent=Physo137367;rank=5 scaffold_53 . exon 234604 237864 . - . ID=Physo137367.5;Parent=Physo137367;constitutive=1;rank=5 scaffold_53 . CDS 237969 237987 . - 0 ID=Physo137367;Parent=Physo137367;rank=4 scaffold_53 . CDS 238100 239993 . - 0 ID=Physo137367;Parent=Physo137367;rank=3 scaffold_53 . CDS 240370 240377 . - 0 ID=Physo137367;Parent=Physo137367;rank=2 scaffold_53 . CDS 240416 242385 . - 0 ID=Physo137367;Parent=Physo137367;rank=1 scaffold_53 . repeat_region 236769 236826 . + . description=(TCG)n scaffold_53 . repeat_region 236780 236811 . ? . description=dust scaffold_53 . repeat_region 242388 242456 . ? . description=dust scaffold_53 . biological_region 242666 242670 0.999 - . logic_name=eponine scaffold_53 . biological_region 244305 244306 0.999 + . logic_name=eponine scaffold_53 . repeat_region 245082 245089 . ? . description=dust scaffold_53 . exon 237969 237987 . - . ID=Physo137367.4;Parent=Physo137367;constitutive=1;ensembl_phase=2;rank=4 scaffold_53 . exon 238100 239993 . - . ID=Physo137367.3;Parent=Physo137367;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_53 . exon 240370 240377 . - . ID=Physo137367.2;Parent=Physo137367;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_53 . exon 240416 242385 . - . ID=Physo137367.1;Parent=Physo137367;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 243253 244051 . - . ID=Physo137368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530061;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 243253 244051 . - . ID=Physo137368;Parent=Physo137368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 243253 244051 . - . ID=Physo137368.1;Parent=Physo137368;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 243286 244050 . - 0 ID=Physo137368;Parent=Physo137368;rank=1 scaffold_53 ensembl protein_coding_gene 244218 245151 . + . ID=Physo137369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530062;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 244218 245151 . + . ID=Physo137369;Parent=Physo137369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 244218 245024 . + 0 ID=Physo137369;Parent=Physo137369;rank=1 scaffold_53 . exon 244218 245151 . + . ID=Physo137369.1;Parent=Physo137369;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_53 ensembl protein_coding_gene 245655 247447 . + . ID=Physo137370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530063;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 245655 247447 . + . ID=Physo137370;Parent=Physo137370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 245655 245950 . + 0 ID=Physo137370;Parent=Physo137370;rank=1 scaffold_53 . exon 245655 245950 . + . ID=Physo137370.1;Parent=Physo137370;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . CDS 246006 246426 . + 0 ID=Physo137370;Parent=Physo137370;rank=2 scaffold_53 . exon 246006 246426 . + . ID=Physo137370.2;Parent=Physo137370;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 246483 247445 . + 0 ID=Physo137370;Parent=Physo137370;rank=3 scaffold_53 . exon 246483 247447 . + . ID=Physo137370.3;Parent=Physo137370;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_53 ensembl protein_coding_gene 247831 250875 . + . ID=Physo137372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530065;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 247831 250875 . + . ID=Physo137372;Parent=Physo137372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 247831 248864 . + . ID=Physo137372.1;Parent=Physo137372;constitutive=1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 247866 248864 . + 0 ID=Physo137372;Parent=Physo137372;rank=1 scaffold_53 . CDS 248885 249231 . + 0 ID=Physo137372;Parent=Physo137372;rank=2 scaffold_53 . exon 248885 249231 . + . ID=Physo137372.2;Parent=Physo137372;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_53 . CDS 249387 249591 . + 0 ID=Physo137372;Parent=Physo137372;rank=3 scaffold_53 . exon 249387 249591 . + . ID=Physo137372.3;Parent=Physo137372;constitutive=1;ensembl_phase=2;rank=3 scaffold_53 . CDS 249643 250875 . + 0 ID=Physo137372;Parent=Physo137372;rank=4 scaffold_53 . exon 249643 250875 . + . ID=Physo137372.4;Parent=Physo137372;constitutive=1;rank=4 scaffold_53 ensembl protein_coding_gene 254718 260522 . - . ID=Physo157588;biotype=protein_coding;external_name=C_scaffold_53000013;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 254718 260522 . - . ID=Physo157588;Parent=Physo157588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 254718 255143 . - 0 ID=Physo157588;Parent=Physo157588;rank=18 scaffold_53 . exon 254718 255143 . - . ID=Physo157588.18;Parent=Physo157588;constitutive=1;rank=18 scaffold_53 . CDS 255209 255307 . - 0 ID=Physo157588;Parent=Physo157588;rank=17 scaffold_53 . CDS 255394 255528 . - 0 ID=Physo157588;Parent=Physo157588;rank=16 scaffold_53 . CDS 255606 255855 . - 0 ID=Physo157588;Parent=Physo157588;rank=15 scaffold_53 . CDS 255994 256303 . - 0 ID=Physo157588;Parent=Physo157588;rank=14 scaffold_53 . CDS 256349 256565 . - 0 ID=Physo157588;Parent=Physo157588;rank=13 scaffold_53 . CDS 256658 256854 . - 0 ID=Physo157588;Parent=Physo157588;rank=12 scaffold_53 . CDS 256984 257395 . - 0 ID=Physo157588;Parent=Physo157588;rank=11 scaffold_53 . CDS 257618 257885 . - 0 ID=Physo157588;Parent=Physo157588;rank=10 scaffold_53 . CDS 257957 258042 . - 0 ID=Physo157588;Parent=Physo157588;rank=9 scaffold_53 . CDS 258127 258310 . - 0 ID=Physo157588;Parent=Physo157588;rank=8 scaffold_53 . CDS 258393 258458 . - 0 ID=Physo157588;Parent=Physo157588;rank=7 scaffold_53 . CDS 258569 258653 . - 0 ID=Physo157588;Parent=Physo157588;rank=6 scaffold_53 . CDS 258741 258828 . - 0 ID=Physo157588;Parent=Physo157588;rank=5 scaffold_53 . CDS 258907 258947 . - 0 ID=Physo157588;Parent=Physo157588;rank=4 scaffold_53 . CDS 259076 259136 . - 0 ID=Physo157588;Parent=Physo157588;rank=3 scaffold_53 . CDS 259341 259557 . - 0 ID=Physo157588;Parent=Physo157588;rank=2 scaffold_53 . CDS 259645 260522 . - 0 ID=Physo157588;Parent=Physo157588;rank=1 scaffold_53 . biological_region 259324 259330 0.999 + . logic_name=eponine scaffold_53 . biological_region 259369 259372 0.999 - . logic_name=eponine scaffold_53 . biological_region 259449 259449 0.999 - . logic_name=eponine scaffold_53 . biological_region 259507 259509 0.999 - . logic_name=eponine scaffold_53 . repeat_region 259582 259603 . ? . description=dust scaffold_53 . biological_region 260527 260532 0.999 - . logic_name=eponine scaffold_53 . biological_region 260961 260966 0.999 + . logic_name=eponine scaffold_53 . biological_region 263673 263677 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 260723 262219 . + . ID=Physo137374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530067;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 260723 262219 . + . ID=Physo137374;Parent=Physo137374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 260723 262219 . + 0 ID=Physo137374;Parent=Physo137374;rank=1 scaffold_53 . exon 260723 262219 . + . ID=Physo137374.1;Parent=Physo137374;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 262331 263836 . - . ID=Physo137375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530068;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 262331 263836 . - . ID=Physo137375;Parent=Physo137375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 262331 263836 . - 0 ID=Physo137375;Parent=Physo137375;rank=1 scaffold_53 . exon 262331 263836 . - . ID=Physo137375.1;Parent=Physo137375;constitutive=1;rank=1 scaffold_53 . exon 255209 255307 . - . ID=Physo157588.17;Parent=Physo157588;constitutive=1;rank=17 scaffold_53 . exon 255394 255528 . - . ID=Physo157588.16;Parent=Physo157588;constitutive=1;rank=16 scaffold_53 . exon 255606 255855 . - . ID=Physo157588.15;Parent=Physo157588;constitutive=1;ensembl_phase=2;rank=15 scaffold_53 . exon 255994 256303 . - . ID=Physo157588.14;Parent=Physo157588;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=14 scaffold_53 . exon 256349 256565 . - . ID=Physo157588.13;Parent=Physo157588;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_53 . exon 256658 256854 . - . ID=Physo157588.12;Parent=Physo157588;constitutive=1;ensembl_phase=1;rank=12 scaffold_53 . exon 256984 257395 . - . ID=Physo157588.11;Parent=Physo157588;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_53 . exon 257618 257885 . - . ID=Physo157588.10;Parent=Physo157588;constitutive=1;ensembl_phase=2;rank=10 scaffold_53 . exon 257957 258042 . - . ID=Physo157588.9;Parent=Physo157588;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_53 . exon 258127 258310 . - . ID=Physo157588.8;Parent=Physo157588;constitutive=1;ensembl_phase=2;rank=8 scaffold_53 . exon 258393 258458 . - . ID=Physo157588.7;Parent=Physo157588;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_53 . exon 258569 258653 . - . ID=Physo157588.6;Parent=Physo157588;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_53 . exon 258741 258828 . - . ID=Physo157588.5;Parent=Physo157588;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_53 . exon 258907 258947 . - . ID=Physo157588.4;Parent=Physo157588;constitutive=1;ensembl_phase=1;rank=4 scaffold_53 . exon 259076 259136 . - . ID=Physo157588.3;Parent=Physo157588;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_53 . exon 259341 259557 . - . ID=Physo157588.2;Parent=Physo157588;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . exon 259645 260522 . - . ID=Physo157588.1;Parent=Physo157588;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . repeat_region 264817 271043 . ? . description=trf scaffold_53 . repeat_region 264817 271048 . ? . description=trf scaffold_53 . repeat_region 271049 271296 . + . description=GypsyPi-1c_I-int scaffold_53 . repeat_region 271367 271480 . ? . description=trf scaffold_53 . repeat_region 271368 271388 . ? . description=trf scaffold_53 . repeat_region 271425 271447 . ? . description=trf scaffold_53 . repeat_region 273798 273824 . ? . description=trf scaffold_53 ensembl protein_coding_gene 271347 271769 . + . ID=Physo137376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530069;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 271347 271769 . + . ID=Physo137376;Parent=Physo137376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 271347 271769 . + 0 ID=Physo137376;Parent=Physo137376;rank=1 scaffold_53 . exon 271347 271769 . + . ID=Physo137376.1;Parent=Physo137376;constitutive=1;rank=1 scaffold_53 . biological_region 277748 277751 0.999 + . logic_name=eponine scaffold_53 . biological_region 279988 279991 0.999 + . logic_name=eponine scaffold_53 . biological_region 280718 280724 0.999 + . logic_name=eponine scaffold_53 . biological_region 280794 280797 0.999 + . logic_name=eponine scaffold_53 . biological_region 280812 280815 0.999 - . logic_name=eponine scaffold_53 . biological_region 280967 280971 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 278867 280216 . - . ID=Physo109023;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_530005;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 278867 280216 . - . ID=Physo109023;Parent=Physo109023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 278867 279539 . - 0 ID=Physo109023;Parent=Physo109023;rank=2 scaffold_53 . exon 278867 279539 . - . ID=Physo109023.2;Parent=Physo109023;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 279624 280216 . - 0 ID=Physo109023;Parent=Physo109023;rank=1 scaffold_53 . exon 279624 280216 . - . ID=Physo109023.1;Parent=Physo109023;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 277666 278366 . + . ID=Physo137377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530070;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 277666 278366 . + . ID=Physo137377;Parent=Physo137377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 277666 278073 . + 0 ID=Physo137377;Parent=Physo137377;rank=1 scaffold_53 . exon 277666 278073 . + . ID=Physo137377.1;Parent=Physo137377;constitutive=1;rank=1 scaffold_53 . CDS 278142 278366 . + 0 ID=Physo137377;Parent=Physo137377;rank=2 scaffold_53 . exon 278142 278366 . + . ID=Physo137377.2;Parent=Physo137377;constitutive=1;rank=2 scaffold_53 ensembl protein_coding_gene 280423 282297 . - . ID=Physo137379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530072;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 280423 282297 . - . ID=Physo137379;Parent=Physo137379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 280423 282297 . - 0 ID=Physo137379;Parent=Physo137379;rank=1 scaffold_53 . exon 280423 282297 . - . ID=Physo137379.1;Parent=Physo137379;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 283372 286374 . - . ID=Physo157589;biotype=protein_coding;external_name=C_scaffold_53000014;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 283372 286374 . - . ID=Physo157589;Parent=Physo157589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 283372 283416 . - 0 ID=Physo157589;Parent=Physo157589;rank=11 scaffold_53 . exon 283372 283416 . - . ID=Physo157589.11;Parent=Physo157589;constitutive=1;rank=11 scaffold_53 . CDS 283528 283781 . - 0 ID=Physo157589;Parent=Physo157589;rank=10 scaffold_53 . exon 283528 283781 . - . ID=Physo157589.10;Parent=Physo157589;constitutive=1;ensembl_phase=1;rank=10 scaffold_53 . CDS 283899 284086 . - 0 ID=Physo157589;Parent=Physo157589;rank=9 scaffold_53 . exon 283899 284086 . - . ID=Physo157589.9;Parent=Physo157589;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_53 . CDS 284184 284199 . - 0 ID=Physo157589;Parent=Physo157589;rank=8 scaffold_53 . exon 284184 284199 . - . ID=Physo157589.8;Parent=Physo157589;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_53 . CDS 284340 284526 . - 0 ID=Physo157589;Parent=Physo157589;rank=7 scaffold_53 . exon 284340 284526 . - . ID=Physo157589.7;Parent=Physo157589;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_53 . CDS 284560 284675 . - 0 ID=Physo157589;Parent=Physo157589;rank=6 scaffold_53 . CDS 284784 284929 . - 0 ID=Physo157589;Parent=Physo157589;rank=5 scaffold_53 . CDS 285128 285198 . - 0 ID=Physo157589;Parent=Physo157589;rank=4 scaffold_53 . CDS 285268 285447 . - 0 ID=Physo157589;Parent=Physo157589;rank=3 scaffold_53 . CDS 285679 285757 . - 0 ID=Physo157589;Parent=Physo157589;rank=2 scaffold_53 . CDS 285857 286374 . - 0 ID=Physo157589;Parent=Physo157589;rank=1 scaffold_53 . repeat_region 289074 289109 . ? . description=trf scaffold_53 . repeat_region 289076 289118 . ? . description=trf scaffold_53 ensembl protein_coding_gene 286748 288057 . + . ID=Physo109024;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_530006;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 286748 288057 . + . ID=Physo109024;Parent=Physo109024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 286748 288057 . + . ID=Physo109024.1;Parent=Physo109024;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 286810 287814 . + 0 ID=Physo109024;Parent=Physo109024;rank=1 scaffold_53 ensembl protein_coding_gene 288096 289838 . - . ID=Physo137382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530075;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 288096 289838 . - . ID=Physo137382;Parent=Physo137382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 288096 288223 . - . ID=Physo137382.4;Parent=Physo137382;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_53 . CDS 288155 288223 . - 0 ID=Physo137382;Parent=Physo137382;rank=4 scaffold_53 . CDS 288294 288445 . - 0 ID=Physo137382;Parent=Physo137382;rank=3 scaffold_53 . exon 288294 288445 . - . ID=Physo137382.3;Parent=Physo137382;constitutive=1;ensembl_phase=1;rank=3 scaffold_53 . CDS 288517 288613 . - 0 ID=Physo137382;Parent=Physo137382;rank=2 scaffold_53 . exon 288517 288613 . - . ID=Physo137382.2;Parent=Physo137382;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_53 . CDS 288681 289838 . - 0 ID=Physo137382;Parent=Physo137382;rank=1 scaffold_53 . exon 288681 289838 . - . ID=Physo137382.1;Parent=Physo137382;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 292707 294477 . + . ID=Physo137384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530077;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 292707 294477 . + . ID=Physo137384;Parent=Physo137384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 292707 294477 . + . ID=Physo137384.1;Parent=Physo137384;constitutive=1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 292813 294477 . + 0 ID=Physo137384;Parent=Physo137384;rank=1 scaffold_53 . exon 284560 284675 . - . ID=Physo157589.6;Parent=Physo157589;constitutive=1;ensembl_phase=1;rank=6 scaffold_53 . exon 284784 284929 . - . ID=Physo157589.5;Parent=Physo157589;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_53 . exon 285128 285198 . - . ID=Physo157589.4;Parent=Physo157589;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_53 . exon 285268 285447 . - . ID=Physo157589.3;Parent=Physo157589;constitutive=1;rank=3 scaffold_53 . exon 285679 285757 . - . ID=Physo157589.2;Parent=Physo157589;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . exon 285857 286374 . - . ID=Physo157589.1;Parent=Physo157589;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 289973 291474 . + . ID=Physo157594;biotype=protein_coding;external_name=C_scaffold_53000019;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 289973 291474 . + . ID=Physo157594;Parent=Physo157594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 289973 290376 . + 0 ID=Physo157594;Parent=Physo157594;rank=1 scaffold_53 . exon 289973 290376 . + . ID=Physo157594.1;Parent=Physo157594;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . CDS 290413 290550 . + 0 ID=Physo157594;Parent=Physo157594;rank=2 scaffold_53 . exon 290413 290550 . + . ID=Physo157594.2;Parent=Physo157594;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_53 . CDS 290777 290830 . + 0 ID=Physo157594;Parent=Physo157594;rank=3 scaffold_53 . exon 290777 290830 . + . ID=Physo157594.3;Parent=Physo157594;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_53 . CDS 291046 291360 . + 0 ID=Physo157594;Parent=Physo157594;rank=4 scaffold_53 . exon 291046 291360 . + . ID=Physo157594.4;Parent=Physo157594;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_53 . CDS 291456 291474 . + 0 ID=Physo157594;Parent=Physo157594;rank=5 scaffold_53 . exon 291456 291474 . + . ID=Physo157594.5;Parent=Physo157594;constitutive=1;ensembl_phase=2;rank=5 scaffold_53 . biological_region 300025 300027 0.999 - . logic_name=eponine scaffold_53 . biological_region 300128 300130 0.999 - . logic_name=eponine scaffold_53 . biological_region 300474 300479 0.999 + . logic_name=eponine scaffold_53 . biological_region 300607 300608 0.999 - . logic_name=eponine scaffold_53 . biological_region 300626 300633 0.999 - . logic_name=eponine scaffold_53 . biological_region 300661 300665 0.999 - . logic_name=eponine scaffold_53 . biological_region 300859 300861 0.999 + . logic_name=eponine scaffold_53 . biological_region 300931 300935 0.999 + . logic_name=eponine scaffold_53 . biological_region 300969 300972 0.999 - . logic_name=eponine scaffold_53 . biological_region 302278 302280 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 302915 303625 . + . ID=Physo109026;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84XT4];external_name=estExt_fgenesh1_pm.C_530008;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 302915 303625 . + . ID=Physo109026;Parent=Physo109026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 302915 303625 . + . ID=Physo109026.1;Parent=Physo109026;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 302965 303585 . + 0 ID=Physo109026;Parent=Physo109026;rank=1 scaffold_53 ensembl protein_coding_gene 294796 296442 . - . ID=Physo137385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530078;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 294796 296442 . - . ID=Physo137385;Parent=Physo137385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 294796 296442 . - 0 ID=Physo137385;Parent=Physo137385;rank=1 scaffold_53 . exon 294796 296442 . - . ID=Physo137385.1;Parent=Physo137385;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 303976 305673 . + . ID=Physo137389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530082;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 303976 305673 . + . ID=Physo137389;Parent=Physo137389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 303976 305673 . + . ID=Physo137389.1;Parent=Physo137389;constitutive=1;ensembl_phase=-1;rank=1 scaffold_53 . CDS 304156 305673 . + 0 ID=Physo137389;Parent=Physo137389;rank=1 scaffold_53 ensembl protein_coding_gene 296914 298338 . + . ID=Physo157596;biotype=protein_coding;external_name=C_scaffold_53000021;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 296914 298338 . + . ID=Physo157596;Parent=Physo157596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 296914 297032 . + 0 ID=Physo157596;Parent=Physo157596;rank=1 scaffold_53 . exon 296914 297032 . + . ID=Physo157596.1;Parent=Physo157596;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . CDS 297106 297171 . + 0 ID=Physo157596;Parent=Physo157596;rank=2 scaffold_53 . exon 297106 297171 . + . ID=Physo157596.2;Parent=Physo157596;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_53 . CDS 297252 297483 . + 0 ID=Physo157596;Parent=Physo157596;rank=3 scaffold_53 . exon 297252 297483 . + . ID=Physo157596.3;Parent=Physo157596;constitutive=1;ensembl_phase=2;rank=3 scaffold_53 . CDS 297667 297794 . + 0 ID=Physo157596;Parent=Physo157596;rank=4 scaffold_53 . exon 297667 297794 . + . ID=Physo157596.4;Parent=Physo157596;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_53 . CDS 298197 298338 . + 0 ID=Physo157596;Parent=Physo157596;rank=5 scaffold_53 . exon 298197 298338 . + . ID=Physo157596.5;Parent=Physo157596;constitutive=1;ensembl_phase=2;rank=5 scaffold_53 ensembl protein_coding_gene 298438 300171 . - . ID=Physo157597;biotype=protein_coding;external_name=C_scaffold_53000022;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 298438 300171 . - . ID=Physo157597;Parent=Physo157597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 298438 298854 . - 0 ID=Physo157597;Parent=Physo157597;rank=5 scaffold_53 . exon 298438 298854 . - . ID=Physo157597.5;Parent=Physo157597;constitutive=1;rank=5 scaffold_53 . CDS 298969 299160 . - 0 ID=Physo157597;Parent=Physo157597;rank=4 scaffold_53 . exon 298969 299160 . - . ID=Physo157597.4;Parent=Physo157597;constitutive=1;rank=4 scaffold_53 . CDS 299236 299376 . - 0 ID=Physo157597;Parent=Physo157597;rank=3 scaffold_53 . exon 299236 299376 . - . ID=Physo157597.3;Parent=Physo157597;constitutive=1;rank=3 scaffold_53 . CDS 299407 300049 . - 0 ID=Physo157597;Parent=Physo157597;rank=2 scaffold_53 . exon 299407 300049 . - . ID=Physo157597.2;Parent=Physo157597;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . CDS 300143 300171 . - 0 ID=Physo157597;Parent=Physo157597;rank=1 scaffold_53 . exon 300143 300171 . - . ID=Physo157597.1;Parent=Physo157597;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 300422 301900 . + . ID=Physo157598;biotype=protein_coding;external_name=C_scaffold_53000023;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 300422 301900 . + . ID=Physo157598;Parent=Physo157598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 300422 301900 . + 0 ID=Physo157598;Parent=Physo157598;rank=1 scaffold_53 . exon 300422 301900 . + . ID=Physo157598.1;Parent=Physo157598;constitutive=1;rank=1 scaffold_53 . repeat_region 309600 309649 . ? . description=dust scaffold_53 . repeat_region 309600 309649 . ? . description=trf scaffold_53 . repeat_region 309606 309649 . ? . description=trf scaffold_53 . repeat_region 309606 309649 . ? . description=trf scaffold_53 . repeat_region 311417 311490 . ? . description=trf scaffold_53 . repeat_region 311446 311518 . ? . description=trf scaffold_53 . repeat_region 311486 311522 . ? . description=trf scaffold_53 ensembl protein_coding_gene 309649 312093 . + . ID=Physo137390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530083;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 309649 312093 . + . ID=Physo137390;Parent=Physo137390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 309649 312093 . + 0 ID=Physo137390;Parent=Physo137390;rank=1 scaffold_53 . exon 309649 312093 . + . ID=Physo137390.1;Parent=Physo137390;constitutive=1;rank=1 scaffold_53 . biological_region 317499 317503 0.999 + . logic_name=eponine scaffold_53 . biological_region 318127 318134 0.999 - . logic_name=eponine scaffold_53 . biological_region 318172 318176 0.999 - . logic_name=eponine scaffold_53 . biological_region 318577 318580 0.999 - . logic_name=eponine scaffold_53 . biological_region 318632 318635 0.999 - . logic_name=eponine scaffold_53 . biological_region 318992 318992 0.999 - . logic_name=eponine scaffold_53 . biological_region 322223 322225 0.999 + . logic_name=eponine scaffold_53 . biological_region 323519 323520 0.999 - . logic_name=eponine scaffold_53 ensembl protein_coding_gene 318036 319592 . + . ID=Physo137391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530084;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 318036 319592 . + . ID=Physo137391;Parent=Physo137391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 318036 318955 . + 0 ID=Physo137391;Parent=Physo137391;rank=1 scaffold_53 . exon 318036 318955 . + . ID=Physo137391.1;Parent=Physo137391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 . CDS 318977 319592 . + 0 ID=Physo137391;Parent=Physo137391;rank=2 scaffold_53 . exon 318977 319592 . + . ID=Physo137391.2;Parent=Physo137391;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 ensembl protein_coding_gene 319786 325746 . - . ID=Physo137392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530085;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 319786 325746 . - . ID=Physo137392;Parent=Physo137392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 319786 320055 . - 0 ID=Physo137392;Parent=Physo137392;rank=12 scaffold_53 . exon 319786 320055 . - . ID=Physo137392.12;Parent=Physo137392;constitutive=1;rank=12 scaffold_53 . CDS 320121 320398 . - 0 ID=Physo137392;Parent=Physo137392;rank=11 scaffold_53 . exon 320121 320398 . - . ID=Physo137392.11;Parent=Physo137392;constitutive=1;ensembl_phase=1;rank=11 scaffold_53 . CDS 320650 320764 . - 0 ID=Physo137392;Parent=Physo137392;rank=10 scaffold_53 . exon 320650 320764 . - . ID=Physo137392.10;Parent=Physo137392;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_53 . CDS 321370 321998 . - 0 ID=Physo137392;Parent=Physo137392;rank=9 scaffold_53 . exon 321370 321998 . - . ID=Physo137392.9;Parent=Physo137392;constitutive=1;ensembl_phase=1;rank=9 scaffold_53 . CDS 322044 322429 . - 0 ID=Physo137392;Parent=Physo137392;rank=8 scaffold_53 . exon 322044 322429 . - . ID=Physo137392.8;Parent=Physo137392;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_53 . CDS 322456 322539 . - 0 ID=Physo137392;Parent=Physo137392;rank=7 scaffold_53 . exon 322456 322539 . - . ID=Physo137392.7;Parent=Physo137392;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_53 . CDS 322663 322823 . - 0 ID=Physo137392;Parent=Physo137392;rank=6 scaffold_53 . exon 322663 322823 . - . ID=Physo137392.6;Parent=Physo137392;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_53 . CDS 322850 322866 . - 0 ID=Physo137392;Parent=Physo137392;rank=5 scaffold_53 . exon 322850 322866 . - . ID=Physo137392.5;Parent=Physo137392;constitutive=1;ensembl_phase=1;rank=5 scaffold_53 . CDS 322919 322987 . - 0 ID=Physo137392;Parent=Physo137392;rank=4 scaffold_53 . exon 322919 322987 . - . ID=Physo137392.4;Parent=Physo137392;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_53 . CDS 323106 324993 . - 0 ID=Physo137392;Parent=Physo137392;rank=3 scaffold_53 . exon 323106 324993 . - . ID=Physo137392.3;Parent=Physo137392;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_53 . CDS 325045 325377 . - 0 ID=Physo137392;Parent=Physo137392;rank=2 scaffold_53 . CDS 325417 325746 . - 0 ID=Physo137392;Parent=Physo137392;rank=1 scaffold_53 . repeat_region 327134 327189 . ? . description=trf scaffold_53 . repeat_region 327771 327800 . ? . description=trf scaffold_53 . repeat_region 327869 327909 . ? . description=trf scaffold_53 . repeat_region 327920 327953 . ? . description=trf scaffold_53 . repeat_region 330655 330677 . ? . description=trf scaffold_53 . repeat_region 331074 331196 . ? . description=trf scaffold_53 . repeat_region 331074 331203 . ? . description=trf scaffold_53 . repeat_region 331215 331264 . ? . description=trf scaffold_53 . exon 325045 325377 . - . ID=Physo137392.2;Parent=Physo137392;constitutive=1;rank=2 scaffold_53 . exon 325417 325746 . - . ID=Physo137392.1;Parent=Physo137392;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 326380 327854 . - . ID=Physo137393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530086;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 326380 327854 . - . ID=Physo137393;Parent=Physo137393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 326380 327380 . - 0 ID=Physo137393;Parent=Physo137393;rank=2 scaffold_53 . exon 326380 327380 . - . ID=Physo137393.2;Parent=Physo137393;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 327482 327854 . - 0 ID=Physo137393;Parent=Physo137393;rank=1 scaffold_53 . exon 327482 327854 . - . ID=Physo137393.1;Parent=Physo137393;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 ensembl protein_coding_gene 332253 333317 . + . ID=Physo137394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530087;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 332253 333317 . + . ID=Physo137394;Parent=Physo137394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 332253 333317 . + 0 ID=Physo137394;Parent=Physo137394;rank=1 scaffold_53 . exon 332253 333317 . + . ID=Physo137394.1;Parent=Physo137394;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 333442 335012 . - . ID=Physo137395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530088;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 333442 335012 . - . ID=Physo137395;Parent=Physo137395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 333442 333815 . - 0 ID=Physo137395;Parent=Physo137395;rank=5 scaffold_53 . exon 333442 333815 . - . ID=Physo137395.5;Parent=Physo137395;constitutive=1;ensembl_phase=1;rank=5 scaffold_53 . CDS 333964 334174 . - 0 ID=Physo137395;Parent=Physo137395;rank=4 scaffold_53 . CDS 334329 334379 . - 0 ID=Physo137395;Parent=Physo137395;rank=3 scaffold_53 . CDS 334419 334797 . - 0 ID=Physo137395;Parent=Physo137395;rank=2 scaffold_53 . CDS 334873 335012 . - 0 ID=Physo137395;Parent=Physo137395;rank=1 scaffold_53 . biological_region 333727 333730 0.999 - . logic_name=eponine scaffold_53 . repeat_region 336568 336623 . ? . description=dust scaffold_53 . repeat_region 336585 336745 . + . description=(TCG)n scaffold_53 . biological_region 336591 336594 0.999 + . logic_name=eponine scaffold_53 . repeat_region 338003 338043 . ? . description=dust scaffold_53 . repeat_region 338005 338165 . + . description=(TCG)n scaffold_53 . biological_region 338011 338014 0.999 + . logic_name=eponine scaffold_53 . repeat_region 338296 340090 . ? . description=dust scaffold_53 . repeat_region 340808 340859 . ? . description=dust scaffold_53 . repeat_region 340821 340981 . + . description=(TCG)n scaffold_53 . biological_region 340827 340830 0.999 + . logic_name=eponine scaffold_53 . biological_region 342153 342156 0.999 + . logic_name=eponine scaffold_53 . biological_region 342792 342796 0.999 - . logic_name=eponine scaffold_53 . biological_region 342808 342813 0.999 - . logic_name=eponine scaffold_53 . biological_region 342809 342816 0.999 + . logic_name=eponine scaffold_53 . biological_region 342841 342842 0.999 - . logic_name=eponine scaffold_53 . exon 333964 334174 . - . ID=Physo137395.4;Parent=Physo137395;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_53 . exon 334329 334379 . - . ID=Physo137395.3;Parent=Physo137395;constitutive=1;rank=3 scaffold_53 . exon 334419 334797 . - . ID=Physo137395.2;Parent=Physo137395;constitutive=1;ensembl_phase=2;rank=2 scaffold_53 . exon 334873 335012 . - . ID=Physo137395.1;Parent=Physo137395;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 335612 336013 . + . ID=Physo137396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530089;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 335612 336013 . + . ID=Physo137396;Parent=Physo137396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 335612 336013 . + 0 ID=Physo137396;Parent=Physo137396;rank=1 scaffold_53 . exon 335612 336013 . + . ID=Physo137396.1;Parent=Physo137396;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 336214 336921 . - . ID=Physo137397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530090;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 336214 336921 . - . ID=Physo137397;Parent=Physo137397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 336214 336858 . - 0 ID=Physo137397;Parent=Physo137397;rank=1 scaffold_53 . exon 336214 336921 . - . ID=Physo137397.1;Parent=Physo137397;constitutive=1;ensembl_phase=-1;rank=1 scaffold_53 ensembl protein_coding_gene 337634 338295 . - . ID=Physo137398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530091;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 337634 338295 . - . ID=Physo137398;Parent=Physo137398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 337634 338278 . - 0 ID=Physo137398;Parent=Physo137398;rank=1 scaffold_53 . exon 337634 338295 . - . ID=Physo137398.1;Parent=Physo137398;constitutive=1;ensembl_phase=-1;rank=1 scaffold_53 ensembl protein_coding_gene 340450 341157 . - . ID=Physo137399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530092;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 340450 341157 . - . ID=Physo137399;Parent=Physo137399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 340450 341094 . - 0 ID=Physo137399;Parent=Physo137399;rank=1 scaffold_53 . exon 340450 341157 . - . ID=Physo137399.1;Parent=Physo137399;constitutive=1;ensembl_phase=-1;rank=1 scaffold_53 ensembl protein_coding_gene 342698 343894 . + . ID=Physo137400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530093;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 342698 343894 . + . ID=Physo137400;Parent=Physo137400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 342698 343894 . + 0 ID=Physo137400;Parent=Physo137400;rank=1 scaffold_53 . exon 342698 343894 . + . ID=Physo137400.1;Parent=Physo137400;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 344049 345941 . - . ID=Physo137401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530094;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 344049 345941 . - . ID=Physo137401;Parent=Physo137401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 344049 345941 . - 0 ID=Physo137401;Parent=Physo137401;rank=1 scaffold_53 . exon 344049 345941 . - . ID=Physo137401.1;Parent=Physo137401;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 346175 346606 . + . ID=Physo137402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530095;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 346175 346606 . + . ID=Physo137402;Parent=Physo137402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 346175 346606 . + 0 ID=Physo137402;Parent=Physo137402;rank=1 scaffold_53 . exon 346175 346606 . + . ID=Physo137402.1;Parent=Physo137402;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 346740 347736 . - . ID=Physo137403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530096;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 346740 347736 . - . ID=Physo137403;Parent=Physo137403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 346740 347417 . - 0 ID=Physo137403;Parent=Physo137403;rank=2 scaffold_53 . exon 346740 347417 . - . ID=Physo137403.2;Parent=Physo137403;constitutive=1;rank=2 scaffold_53 . CDS 347494 347736 . - 0 ID=Physo137403;Parent=Physo137403;rank=1 scaffold_53 . exon 347494 347736 . - . ID=Physo137403.1;Parent=Physo137403;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 349179 349637 . + . ID=Physo137404;biotype=protein_coding;description=PsAvh346 [Source:UniProtKB/TrEMBL%3BAcc:E0W593];external_name=estExt_fgenesh1_pg.C_530097;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 349179 349637 . + . ID=Physo137404;Parent=Physo137404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 349179 349637 . + 0 ID=Physo137404;Parent=Physo137404;rank=1 scaffold_53 . exon 349179 349637 . + . ID=Physo137404.1;Parent=Physo137404;constitutive=1;rank=1 scaffold_53 . repeat_region 354398 354405 . ? . description=dust scaffold_53 . repeat_region 358020 358027 . ? . description=dust scaffold_53 . repeat_region 358490 358497 . ? . description=dust scaffold_53 . biological_region 360219 360223 0.999 + . logic_name=eponine scaffold_53 . biological_region 360703 360704 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 356886 357836 . - . ID=Physo137405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530098;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 356886 357836 . - . ID=Physo137405;Parent=Physo137405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 356886 356906 . - 0 ID=Physo137405;Parent=Physo137405;rank=3 scaffold_53 . exon 356886 356906 . - . ID=Physo137405.3;Parent=Physo137405;constitutive=1;rank=3 scaffold_53 . CDS 356937 357272 . - 0 ID=Physo137405;Parent=Physo137405;rank=2 scaffold_53 . exon 356937 357272 . - . ID=Physo137405.2;Parent=Physo137405;constitutive=1;rank=2 scaffold_53 . CDS 357345 357836 . - 0 ID=Physo137405;Parent=Physo137405;rank=1 scaffold_53 . exon 357345 357836 . - . ID=Physo137405.1;Parent=Physo137405;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 360246 362742 . + . ID=Physo137406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530099;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 360246 362742 . + . ID=Physo137406;Parent=Physo137406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 360246 360422 . + 0 ID=Physo137406;Parent=Physo137406;rank=1 scaffold_53 . exon 360246 360422 . + . ID=Physo137406.1;Parent=Physo137406;constitutive=1;rank=1 scaffold_53 . CDS 360496 360931 . + 0 ID=Physo137406;Parent=Physo137406;rank=2 scaffold_53 . exon 360496 360931 . + . ID=Physo137406.2;Parent=Physo137406;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_53 . CDS 361166 362742 . + 0 ID=Physo137406;Parent=Physo137406;rank=3 scaffold_53 . exon 361166 362742 . + . ID=Physo137406.3;Parent=Physo137406;constitutive=1;ensembl_phase=1;rank=3 scaffold_53 . repeat_region 370543 370583 . ? . description=trf scaffold_53 ensembl protein_coding_gene 369861 371548 . + . ID=Physo137407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530100;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 369861 371548 . + . ID=Physo137407;Parent=Physo137407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 369861 369966 . + 0 ID=Physo137407;Parent=Physo137407;rank=1 scaffold_53 . exon 369861 369966 . + . ID=Physo137407.1;Parent=Physo137407;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 . CDS 370243 370394 . + 0 ID=Physo137407;Parent=Physo137407;rank=2 scaffold_53 . exon 370243 370394 . + . ID=Physo137407.2;Parent=Physo137407;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 370513 371094 . + 0 ID=Physo137407;Parent=Physo137407;rank=3 scaffold_53 . exon 370513 371094 . + . ID=Physo137407.3;Parent=Physo137407;constitutive=1;rank=3 scaffold_53 . CDS 371135 371165 . + 0 ID=Physo137407;Parent=Physo137407;rank=4 scaffold_53 . exon 371135 371165 . + . ID=Physo137407.4;Parent=Physo137407;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_53 . CDS 371202 371434 . + 0 ID=Physo137407;Parent=Physo137407;rank=5 scaffold_53 . exon 371202 371548 . + . ID=Physo137407.5;Parent=Physo137407;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_53 . biological_region 378074 378077 0.999 + . logic_name=eponine scaffold_53 ensembl protein_coding_gene 375861 378563 . - . ID=Physo137408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530101;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 375861 378563 . - . ID=Physo137408;Parent=Physo137408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 375861 378563 . - 0 ID=Physo137408;Parent=Physo137408;rank=1 scaffold_53 . exon 375861 378563 . - . ID=Physo137408.1;Parent=Physo137408;constitutive=1;rank=1 scaffold_53 . repeat_region 386681 386705 . ? . description=trf scaffold_53 . repeat_region 387415 387450 . ? . description=dust scaffold_53 . repeat_region 387416 387450 . ? . description=trf scaffold_53 . repeat_region 387416 387450 . + . description=(ACTG)n scaffold_53 . repeat_region 390668 398487 . ? . description=dust scaffold_53 ensembl protein_coding_gene 385160 387382 . - . ID=Physo137409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530102;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 385160 387382 . - . ID=Physo137409;Parent=Physo137409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . exon 385160 385290 . - . ID=Physo137409.2;Parent=Physo137409;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_53 . CDS 385284 385290 . - 0 ID=Physo137409;Parent=Physo137409;rank=2 scaffold_53 . CDS 385365 387382 . - 0 ID=Physo137409;Parent=Physo137409;rank=1 scaffold_53 . exon 385365 387382 . - . ID=Physo137409.1;Parent=Physo137409;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_53 ensembl protein_coding_gene 401075 401647 . - . ID=Physo137410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530103;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 401075 401647 . - . ID=Physo137410;Parent=Physo137410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 401075 401647 . - 0 ID=Physo137410;Parent=Physo137410;rank=1 scaffold_53 . exon 401075 401647 . - . ID=Physo137410.1;Parent=Physo137410;constitutive=1;rank=1 scaffold_53 . biological_region 405725 405730 0.999 + . logic_name=eponine scaffold_53 . biological_region 405839 405844 0.999 - . logic_name=eponine scaffold_53 . biological_region 405858 405862 0.999 - . logic_name=eponine scaffold_53 . biological_region 405897 405898 0.999 + . logic_name=eponine scaffold_53 . biological_region 405914 405919 0.999 + . logic_name=eponine scaffold_53 . repeat_region 407946 407969 . ? . description=dust scaffold_53 . repeat_region 407946 407969 . ? . description=trf scaffold_53 ensembl protein_coding_gene 402283 402876 . - . ID=Physo137411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530104;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 402283 402876 . - . ID=Physo137411;Parent=Physo137411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 402283 402624 . - 0 ID=Physo137411;Parent=Physo137411;rank=3 scaffold_53 . exon 402283 402624 . - . ID=Physo137411.3;Parent=Physo137411;constitutive=1;rank=3 scaffold_53 . CDS 402734 402816 . - 0 ID=Physo137411;Parent=Physo137411;rank=2 scaffold_53 . exon 402734 402816 . - . ID=Physo137411.2;Parent=Physo137411;constitutive=1;ensembl_phase=1;rank=2 scaffold_53 . CDS 402870 402876 . - 0 ID=Physo137411;Parent=Physo137411;rank=1 scaffold_53 . exon 402870 402876 . - . ID=Physo137411.1;Parent=Physo137411;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_53 ensembl protein_coding_gene 404762 407323 . + . ID=Physo137412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530105;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 404762 407323 . + . ID=Physo137412;Parent=Physo137412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 404762 407323 . + 0 ID=Physo137412;Parent=Physo137412;rank=1 scaffold_53 . exon 404762 407323 . + . ID=Physo137412.1;Parent=Physo137412;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 408094 410994 . + . ID=Physo137413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530106;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 408094 410994 . + . ID=Physo137413;Parent=Physo137413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 408094 410994 . + 0 ID=Physo137413;Parent=Physo137413;rank=1 scaffold_53 . exon 408094 410994 . + . ID=Physo137413.1;Parent=Physo137413;constitutive=1;rank=1 scaffold_53 ensembl protein_coding_gene 411606 411919 . + . ID=Physo137414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_530107;logic_name=jgi_physo1_1 scaffold_53 ensembl transcript 411606 411919 . + . ID=Physo137414;Parent=Physo137414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_53 . CDS 411606 411917 . + 0 ID=Physo137414;Parent=Physo137414;rank=1 scaffold_53 . exon 411606 411919 . + . ID=Physo137414.1;Parent=Physo137414;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_65 1 414229 scaffold_65 . biological_region 529 530 0.999 + . logic_name=eponine scaffold_65 . repeat_region 1548 1575 . ? . description=trf scaffold_65 . repeat_region 2377 2384 . ? . description=dust scaffold_65 . repeat_region 2710 2728 . ? . description=dust scaffold_65 . repeat_region 3830 3877 . ? . description=trf scaffold_65 . repeat_region 5345 5358 . ? . description=dust scaffold_65 ensembl tRNA_gene 139 211 . + . ID=EPrPSOG00000000138;biotype=tRNA;description=tRNA-Phe for anticodon GAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_65 ensembl transcript 139 211 . + . ID=EPrPSOT00000000138;Parent=EPrPSOG00000000138;biotype=tRNA;logic_name=ncrna_eg scaffold_65 ensembl tRNA_gene 707 779 . + . ID=EPrPSOG00000000203;biotype=tRNA;description=tRNA-Phe for anticodon GAA [Source:TRNASCAN_SE%3BAcc:tRNA-Phe];external_name=tRNA-Phe;logic_name=ncrna_eg scaffold_65 ensembl transcript 707 779 . + . ID=EPrPSOT00000000203;Parent=EPrPSOG00000000203;biotype=tRNA;logic_name=ncrna_eg scaffold_65 . exon 139 211 . + . ID=EPrPSOE00000000138;Parent=EPrPSOT00000000138;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . exon 707 779 . + . ID=EPrPSOE00000000203;Parent=EPrPSOT00000000203;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 ensembl protein_coding_gene 2498 3446 . - . ID=Physo138582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650001;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 2498 3446 . - . ID=Physo138582;Parent=Physo138582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 2498 3079 . - 0 ID=Physo138582;Parent=Physo138582;rank=2 scaffold_65 . exon 2498 3079 . - . ID=Physo138582.2;Parent=Physo138582;constitutive=1;rank=2 scaffold_65 . CDS 3372 3446 . - 0 ID=Physo138582;Parent=Physo138582;rank=1 scaffold_65 . exon 3372 3446 . - . ID=Physo138582.1;Parent=Physo138582;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 6858 7984 . + . ID=Physo138583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650002;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 6858 7984 . + . ID=Physo138583;Parent=Physo138583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 6858 6899 . + 0 ID=Physo138583;Parent=Physo138583;rank=1 scaffold_65 . exon 6858 6899 . + . ID=Physo138583.1;Parent=Physo138583;constitutive=1;rank=1 scaffold_65 . CDS 6977 7984 . + 0 ID=Physo138583;Parent=Physo138583;rank=2 scaffold_65 . exon 6977 7984 . + . ID=Physo138583.2;Parent=Physo138583;constitutive=1;rank=2 scaffold_65 ensembl protein_coding_gene 9014 9532 . + . ID=Physo138584;biotype=protein_coding;description=PsAvh206 [Source:UniProtKB/TrEMBL%3BAcc:E0W5C0];external_name=estExt_fgenesh1_pg.C_650003;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 9014 9532 . + . ID=Physo138584;Parent=Physo138584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 9014 9532 . + 0 ID=Physo138584;Parent=Physo138584;rank=1 scaffold_65 . exon 9014 9532 . + . ID=Physo138584.1;Parent=Physo138584;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 10960 11604 . - . ID=Physo138585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650004;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 10960 11604 . - . ID=Physo138585;Parent=Physo138585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 10960 11604 . - 0 ID=Physo138585;Parent=Physo138585;rank=1 scaffold_65 . exon 10960 11604 . - . ID=Physo138585.1;Parent=Physo138585;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 12415 13823 . - . ID=Physo138586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650005;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 12415 13823 . - . ID=Physo138586;Parent=Physo138586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 12415 12953 . - 0 ID=Physo138586;Parent=Physo138586;rank=4 scaffold_65 . exon 12415 12953 . - . ID=Physo138586.4;Parent=Physo138586;constitutive=1;ensembl_phase=1;rank=4 scaffold_65 . CDS 13082 13184 . - 0 ID=Physo138586;Parent=Physo138586;rank=3 scaffold_65 . exon 13082 13184 . - . ID=Physo138586.3;Parent=Physo138586;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_65 . CDS 13251 13457 . - 0 ID=Physo138586;Parent=Physo138586;rank=2 scaffold_65 . exon 13251 13457 . - . ID=Physo138586.2;Parent=Physo138586;constitutive=1;rank=2 scaffold_65 . CDS 13812 13823 . - 0 ID=Physo138586;Parent=Physo138586;rank=1 scaffold_65 . exon 13812 13823 . - . ID=Physo138586.1;Parent=Physo138586;constitutive=1;rank=1 scaffold_65 . biological_region 19993 19994 0.999 + . logic_name=eponine scaffold_65 . biological_region 20201 20203 0.999 + . logic_name=eponine scaffold_65 . repeat_region 24466 24515 . ? . description=dust scaffold_65 . repeat_region 28934 28941 . ? . description=dust scaffold_65 ensembl protein_coding_gene 20117 20813 . + . ID=Physo138587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650006;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 20117 20813 . + . ID=Physo138587;Parent=Physo138587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 20117 20160 . + 0 ID=Physo138587;Parent=Physo138587;rank=1 scaffold_65 . exon 20117 20160 . + . ID=Physo138587.1;Parent=Physo138587;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 20199 20652 . + 0 ID=Physo138587;Parent=Physo138587;rank=2 scaffold_65 . exon 20199 20652 . + . ID=Physo138587.2;Parent=Physo138587;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 20691 20813 . + 0 ID=Physo138587;Parent=Physo138587;rank=3 scaffold_65 . exon 20691 20813 . + . ID=Physo138587.3;Parent=Physo138587;constitutive=1;rank=3 scaffold_65 . biological_region 46408 46411 0.999 + . logic_name=eponine scaffold_65 . repeat_region 46542 46596 . ? . description=trf scaffold_65 . biological_region 46588 46592 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 40963 42150 . - . ID=Physo138588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650007;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 40963 42150 . - . ID=Physo138588;Parent=Physo138588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 40963 42150 . - 0 ID=Physo138588;Parent=Physo138588;rank=1 scaffold_65 . exon 40963 42150 . - . ID=Physo138588.1;Parent=Physo138588;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 47486 48595 . - . ID=Physo138589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650008;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 47486 48595 . - . ID=Physo138589;Parent=Physo138589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 47486 47563 . - 0 ID=Physo138589;Parent=Physo138589;rank=4 scaffold_65 . exon 47486 47563 . - . ID=Physo138589.4;Parent=Physo138589;constitutive=1;rank=4 scaffold_65 . CDS 47824 48029 . - 0 ID=Physo138589;Parent=Physo138589;rank=3 scaffold_65 . exon 47824 48029 . - . ID=Physo138589.3;Parent=Physo138589;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 . CDS 48065 48497 . - 0 ID=Physo138589;Parent=Physo138589;rank=2 scaffold_65 . exon 48065 48497 . - . ID=Physo138589.2;Parent=Physo138589;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_65 . CDS 48575 48595 . - 0 ID=Physo138589;Parent=Physo138589;rank=1 scaffold_65 . exon 48575 48595 . - . ID=Physo138589.1;Parent=Physo138589;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 48965 50170 . + . ID=Physo157854;biotype=protein_coding;external_name=C_scaffold_65000001;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 48965 50170 . + . ID=Physo157854;Parent=Physo157854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 48965 49087 . + 0 ID=Physo157854;Parent=Physo157854;rank=1 scaffold_65 . exon 48965 49087 . + . ID=Physo157854.1;Parent=Physo157854;constitutive=1;rank=1 scaffold_65 . CDS 49155 49367 . + 0 ID=Physo157854;Parent=Physo157854;rank=2 scaffold_65 . exon 49155 49367 . + . ID=Physo157854.2;Parent=Physo157854;constitutive=1;rank=2 scaffold_65 . CDS 49445 50170 . + 0 ID=Physo157854;Parent=Physo157854;rank=3 scaffold_65 . repeat_region 50803 50852 . ? . description=dust scaffold_65 . repeat_region 54280 54291 . ? . description=dust scaffold_65 . repeat_region 55455 55462 . ? . description=dust scaffold_65 ensembl protein_coding_gene 50393 51632 . + . ID=Physo138591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650010;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 50393 51632 . + . ID=Physo138591;Parent=Physo138591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 50393 50769 . + 0 ID=Physo138591;Parent=Physo138591;rank=1 scaffold_65 . exon 50393 50769 . + . ID=Physo138591.1;Parent=Physo138591;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 50861 51632 . + 0 ID=Physo138591;Parent=Physo138591;rank=2 scaffold_65 . exon 50861 51632 . + . ID=Physo138591.2;Parent=Physo138591;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 ensembl protein_coding_gene 51791 52216 . - . ID=Physo138592;biotype=protein_coding;description=PsAvh31 [Source:UniProtKB/TrEMBL%3BAcc:E0W5C1];external_name=estExt_fgenesh1_pg.C_650011;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 51791 52216 . - . ID=Physo138592;Parent=Physo138592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 51791 52216 . - 0 ID=Physo138592;Parent=Physo138592;rank=1 scaffold_65 . exon 51791 52216 . - . ID=Physo138592.1;Parent=Physo138592;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 52794 53360 . - . ID=Physo138593;biotype=protein_coding;description=PsAvh30 [Source:UniProtKB/TrEMBL%3BAcc:E0W5C2];external_name=estExt_fgenesh1_pg.C_650012;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 52794 53360 . - . ID=Physo138593;Parent=Physo138593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 52794 53360 . - 0 ID=Physo138593;Parent=Physo138593;rank=1 scaffold_65 . exon 52794 53360 . - . ID=Physo138593.1;Parent=Physo138593;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 53828 54268 . - . ID=Physo138594;biotype=protein_coding;description=PsAvh77 [Source:UniProtKB/TrEMBL%3BAcc:E0W5C3];external_name=estExt_fgenesh1_pg.C_650013;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 53828 54268 . - . ID=Physo138594;Parent=Physo138594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 53828 54268 . - 0 ID=Physo138594;Parent=Physo138594;rank=1 scaffold_65 . exon 53828 54268 . - . ID=Physo138594.1;Parent=Physo138594;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 55850 56272 . - . ID=Physo138595;biotype=protein_coding;description=PsAvh137 [Source:UniProtKB/TrEMBL%3BAcc:E0W5C4];external_name=estExt_fgenesh1_pg.C_650014;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 55850 56272 . - . ID=Physo138595;Parent=Physo138595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 55850 56272 . - 0 ID=Physo138595;Parent=Physo138595;rank=1 scaffold_65 . exon 55850 56272 . - . ID=Physo138595.1;Parent=Physo138595;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 58990 60324 . - . ID=Physo138596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650015;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 58990 60324 . - . ID=Physo138596;Parent=Physo138596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 58990 59072 . - 0 ID=Physo138596;Parent=Physo138596;rank=5 scaffold_65 . exon 58990 59072 . - . ID=Physo138596.5;Parent=Physo138596;constitutive=1;ensembl_phase=1;rank=5 scaffold_65 . CDS 59200 59668 . - 0 ID=Physo138596;Parent=Physo138596;rank=4 scaffold_65 . CDS 59693 59764 . - 0 ID=Physo138596;Parent=Physo138596;rank=3 scaffold_65 . CDS 59828 60028 . - 0 ID=Physo138596;Parent=Physo138596;rank=2 scaffold_65 . CDS 60121 60324 . - 0 ID=Physo138596;Parent=Physo138596;rank=1 scaffold_65 . exon 49445 50170 . + . ID=Physo157854.3;Parent=Physo157854;constitutive=1;rank=3 scaffold_65 . repeat_region 62067 62212 . ? . description=trf scaffold_65 . biological_region 68372 68372 0.999 + . logic_name=eponine scaffold_65 . exon 59200 59668 . - . ID=Physo138596.4;Parent=Physo138596;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_65 . exon 59693 59764 . - . ID=Physo138596.3;Parent=Physo138596;constitutive=1;rank=3 scaffold_65 . exon 59828 60028 . - . ID=Physo138596.2;Parent=Physo138596;constitutive=1;rank=2 scaffold_65 . exon 60121 60324 . - . ID=Physo138596.1;Parent=Physo138596;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 64828 68548 . - . ID=Physo138597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650016;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 64828 68548 . - . ID=Physo138597;Parent=Physo138597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 64828 64932 . - 0 ID=Physo138597;Parent=Physo138597;rank=11 scaffold_65 . exon 64828 64932 . - . ID=Physo138597.11;Parent=Physo138597;constitutive=1;rank=11 scaffold_65 . CDS 64980 65007 . - 0 ID=Physo138597;Parent=Physo138597;rank=10 scaffold_65 . exon 64980 65007 . - . ID=Physo138597.10;Parent=Physo138597;constitutive=1;ensembl_phase=2;rank=10 scaffold_65 . CDS 65050 65126 . - 0 ID=Physo138597;Parent=Physo138597;rank=9 scaffold_65 . exon 65050 65126 . - . ID=Physo138597.9;Parent=Physo138597;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_65 . CDS 65165 65299 . - 0 ID=Physo138597;Parent=Physo138597;rank=8 scaffold_65 . exon 65165 65299 . - . ID=Physo138597.8;Parent=Physo138597;constitutive=1;rank=8 scaffold_65 . CDS 65391 65707 . - 0 ID=Physo138597;Parent=Physo138597;rank=7 scaffold_65 . exon 65391 65707 . - . ID=Physo138597.7;Parent=Physo138597;constitutive=1;ensembl_phase=1;rank=7 scaffold_65 . CDS 65772 66193 . - 0 ID=Physo138597;Parent=Physo138597;rank=6 scaffold_65 . exon 65772 66193 . - . ID=Physo138597.6;Parent=Physo138597;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_65 . CDS 66341 66826 . - 0 ID=Physo138597;Parent=Physo138597;rank=5 scaffold_65 . exon 66341 66826 . - . ID=Physo138597.5;Parent=Physo138597;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_65 . CDS 67292 67508 . - 0 ID=Physo138597;Parent=Physo138597;rank=4 scaffold_65 . exon 67292 67508 . - . ID=Physo138597.4;Parent=Physo138597;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_65 . CDS 67596 67641 . - 0 ID=Physo138597;Parent=Physo138597;rank=3 scaffold_65 . exon 67596 67641 . - . ID=Physo138597.3;Parent=Physo138597;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_65 . CDS 67663 67941 . - 0 ID=Physo138597;Parent=Physo138597;rank=2 scaffold_65 . exon 67663 67941 . - . ID=Physo138597.2;Parent=Physo138597;constitutive=1;rank=2 scaffold_65 . CDS 68036 68548 . - 0 ID=Physo138597;Parent=Physo138597;rank=1 scaffold_65 . exon 68036 68548 . - . ID=Physo138597.1;Parent=Physo138597;constitutive=1;rank=1 scaffold_65 . repeat_region 69536 69589 . ? . description=dust scaffold_65 . repeat_region 69537 69718 . + . description=GA-rich scaffold_65 . repeat_region 69610 69665 . ? . description=dust scaffold_65 ensembl protein_coding_gene 69116 70831 . + . ID=Physo138598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650017;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 69116 70831 . + . ID=Physo138598;Parent=Physo138598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 69116 69120 . + 0 ID=Physo138598;Parent=Physo138598;rank=1 scaffold_65 . exon 69116 69120 . + . ID=Physo138598.1;Parent=Physo138598;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 69306 70003 . + 0 ID=Physo138598;Parent=Physo138598;rank=2 scaffold_65 . exon 69306 70003 . + . ID=Physo138598.2;Parent=Physo138598;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 70070 70337 . + 0 ID=Physo138598;Parent=Physo138598;rank=3 scaffold_65 . exon 70070 70337 . + . ID=Physo138598.3;Parent=Physo138598;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_65 . CDS 70462 70615 . + 0 ID=Physo138598;Parent=Physo138598;rank=4 scaffold_65 . exon 70462 70615 . + . ID=Physo138598.4;Parent=Physo138598;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 . CDS 70682 70831 . + 0 ID=Physo138598;Parent=Physo138598;rank=5 scaffold_65 . exon 70682 70831 . + . ID=Physo138598.5;Parent=Physo138598;constitutive=1;rank=5 scaffold_65 ensembl protein_coding_gene 73447 74035 . + . ID=Physo138599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650018;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 73447 74035 . + . ID=Physo138599;Parent=Physo138599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 73447 73694 . + 0 ID=Physo138599;Parent=Physo138599;rank=1 scaffold_65 . exon 73447 73694 . + . ID=Physo138599.1;Parent=Physo138599;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 73795 74035 . + 0 ID=Physo138599;Parent=Physo138599;rank=2 scaffold_65 . exon 73795 74035 . + . ID=Physo138599.2;Parent=Physo138599;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 ensembl protein_coding_gene 76129 77732 . - . ID=Physo138600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650019;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 76129 77732 . - . ID=Physo138600;Parent=Physo138600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 76129 76711 . - 0 ID=Physo138600;Parent=Physo138600;rank=4 scaffold_65 . exon 76129 76711 . - . ID=Physo138600.4;Parent=Physo138600;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 . CDS 76945 77183 . - 0 ID=Physo138600;Parent=Physo138600;rank=3 scaffold_65 . exon 76945 77183 . - . ID=Physo138600.3;Parent=Physo138600;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_65 . CDS 77295 77694 . - 0 ID=Physo138600;Parent=Physo138600;rank=2 scaffold_65 . exon 77295 77694 . - . ID=Physo138600.2;Parent=Physo138600;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 77719 77732 . - 0 ID=Physo138600;Parent=Physo138600;rank=1 scaffold_65 . exon 77719 77732 . - . ID=Physo138600.1;Parent=Physo138600;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 ensembl protein_coding_gene 78758 80308 . - . ID=Physo138601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650020;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 78758 80308 . - . ID=Physo138601;Parent=Physo138601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 78758 80308 . - 0 ID=Physo138601;Parent=Physo138601;rank=1 scaffold_65 . exon 78758 80308 . - . ID=Physo138601.1;Parent=Physo138601;constitutive=1;rank=1 scaffold_65 . repeat_region 79971 80001 . ? . description=trf scaffold_65 . biological_region 80199 80202 0.999 + . logic_name=eponine scaffold_65 . biological_region 80249 80254 0.999 + . logic_name=eponine scaffold_65 . biological_region 83908 83913 0.999 - . logic_name=eponine scaffold_65 . biological_region 83931 83934 0.999 - . logic_name=eponine scaffold_65 . biological_region 83985 83997 0.999 + . logic_name=eponine scaffold_65 . biological_region 86008 86009 0.999 - . logic_name=eponine scaffold_65 . biological_region 86064 86065 0.999 + . logic_name=eponine scaffold_65 . biological_region 87941 87945 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 81694 83721 . + . ID=Physo138602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650021;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 81694 83721 . + . ID=Physo138602;Parent=Physo138602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 81694 82052 . + 0 ID=Physo138602;Parent=Physo138602;rank=1 scaffold_65 . exon 81694 82052 . + . ID=Physo138602.1;Parent=Physo138602;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 82113 82402 . + 0 ID=Physo138602;Parent=Physo138602;rank=2 scaffold_65 . exon 82113 82402 . + . ID=Physo138602.2;Parent=Physo138602;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 82451 82616 . + 0 ID=Physo138602;Parent=Physo138602;rank=3 scaffold_65 . exon 82451 82616 . + . ID=Physo138602.3;Parent=Physo138602;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_65 . CDS 82734 82981 . + 0 ID=Physo138602;Parent=Physo138602;rank=4 scaffold_65 . exon 82734 82981 . + . ID=Physo138602.4;Parent=Physo138602;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_65 . CDS 83087 83231 . + 0 ID=Physo138602;Parent=Physo138602;rank=5 scaffold_65 . exon 83087 83231 . + . ID=Physo138602.5;Parent=Physo138602;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_65 . CDS 83273 83288 . + 0 ID=Physo138602;Parent=Physo138602;rank=6 scaffold_65 . exon 83273 83288 . + . ID=Physo138602.6;Parent=Physo138602;constitutive=1;ensembl_phase=2;rank=6 scaffold_65 . CDS 83317 83721 . + 0 ID=Physo138602;Parent=Physo138602;rank=7 scaffold_65 . exon 83317 83721 . + . ID=Physo138602.7;Parent=Physo138602;constitutive=1;rank=7 scaffold_65 ensembl protein_coding_gene 85705 87024 . + . ID=Physo138603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650022;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 85705 87024 . + . ID=Physo138603;Parent=Physo138603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 85705 87024 . + 0 ID=Physo138603;Parent=Physo138603;rank=1 scaffold_65 . exon 85705 87024 . + . ID=Physo138603.1;Parent=Physo138603;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 87457 88653 . + . ID=Physo138604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650023;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 87457 88653 . + . ID=Physo138604;Parent=Physo138604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 87457 88653 . + 0 ID=Physo138604;Parent=Physo138604;rank=1 scaffold_65 . exon 87457 88653 . + . ID=Physo138604.1;Parent=Physo138604;constitutive=1;rank=1 scaffold_65 . repeat_region 91514 93462 . ? . description=dust scaffold_65 . repeat_region 93916 93923 . ? . description=dust scaffold_65 ensembl protein_coding_gene 98259 102530 . + . ID=Physo157856;biotype=protein_coding;external_name=C_scaffold_65000003;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 98259 102530 . + . ID=Physo157856;Parent=Physo157856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 98259 98356 . + 0 ID=Physo157856;Parent=Physo157856;rank=1 scaffold_65 . exon 98259 98356 . + . ID=Physo157856.1;Parent=Physo157856;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 98438 99050 . + 0 ID=Physo157856;Parent=Physo157856;rank=2 scaffold_65 . exon 98438 99050 . + . ID=Physo157856.2;Parent=Physo157856;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 99246 99353 . + 0 ID=Physo157856;Parent=Physo157856;rank=3 scaffold_65 . CDS 99408 100281 . + 0 ID=Physo157856;Parent=Physo157856;rank=4 scaffold_65 . CDS 101347 102530 . + 0 ID=Physo157856;Parent=Physo157856;rank=5 scaffold_65 . biological_region 99173 99177 0.999 + . logic_name=eponine scaffold_65 . biological_region 99343 99348 0.999 - . logic_name=eponine scaffold_65 . biological_region 99758 99761 0.999 - . logic_name=eponine scaffold_65 . biological_region 100761 100765 0.999 + . logic_name=eponine scaffold_65 . biological_region 103234 103235 0.999 - . logic_name=eponine scaffold_65 . biological_region 106032 106033 0.999 - . logic_name=eponine scaffold_65 . biological_region 106834 106837 0.999 - . logic_name=eponine scaffold_65 . repeat_region 107802 107945 . ? . description=trf scaffold_65 ensembl protein_coding_gene 105583 106860 . - . ID=Physo138607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650026;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 105583 106860 . - . ID=Physo138607;Parent=Physo138607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 105583 106860 . - 0 ID=Physo138607;Parent=Physo138607;rank=1 scaffold_65 . exon 105583 106860 . - . ID=Physo138607.1;Parent=Physo138607;constitutive=1;rank=1 scaffold_65 . exon 99246 99353 . + . ID=Physo157856.3;Parent=Physo157856;constitutive=1;rank=3 scaffold_65 . exon 99408 100281 . + . ID=Physo157856.4;Parent=Physo157856;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_65 . exon 101347 102530 . + . ID=Physo157856.5;Parent=Physo157856;constitutive=1;ensembl_phase=1;rank=5 scaffold_65 . repeat_region 110635 110642 . ? . description=dust scaffold_65 . repeat_region 113048 113058 . ? . description=dust scaffold_65 . repeat_region 116802 116817 . ? . description=dust scaffold_65 ensembl protein_coding_gene 117409 119649 . - . ID=Physo138608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650027;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 117409 119649 . - . ID=Physo138608;Parent=Physo138608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 117409 117498 . - 0 ID=Physo138608;Parent=Physo138608;rank=5 scaffold_65 . exon 117409 117498 . - . ID=Physo138608.5;Parent=Physo138608;constitutive=1;rank=5 scaffold_65 . CDS 117728 118722 . - 0 ID=Physo138608;Parent=Physo138608;rank=4 scaffold_65 . exon 117728 118722 . - . ID=Physo138608.4;Parent=Physo138608;constitutive=1;ensembl_phase=1;rank=4 scaffold_65 . CDS 118790 118891 . - 0 ID=Physo138608;Parent=Physo138608;rank=3 scaffold_65 . CDS 118970 119205 . - 0 ID=Physo138608;Parent=Physo138608;rank=2 scaffold_65 . CDS 119519 119649 . - 0 ID=Physo138608;Parent=Physo138608;rank=1 scaffold_65 . repeat_region 121594 121776 . - . description=GypsyPi-1c_LTR scaffold_65 . repeat_region 121899 122219 . - . description=GypsyPi-1c_I-int scaffold_65 . biological_region 122150 122153 0.999 + . logic_name=eponine scaffold_65 . biological_region 122346 122352 0.999 + . logic_name=eponine scaffold_65 . repeat_region 122788 123651 . - . description=GypsyPi-1c_I-int scaffold_65 . repeat_region 123964 124178 . - . description=GypsyPi-1c_I-int scaffold_65 . biological_region 124306 124308 0.999 - . logic_name=eponine scaffold_65 . biological_region 124420 124425 0.999 - . logic_name=eponine scaffold_65 . biological_region 124471 124473 0.999 - . logic_name=eponine scaffold_65 . repeat_region 124540 129870 . - . description=GypsyPi-1c_I-int scaffold_65 . biological_region 125153 125159 0.999 + . logic_name=eponine scaffold_65 . biological_region 125997 125997 0.999 - . logic_name=eponine scaffold_65 . repeat_region 127770 127852 . ? . description=trf scaffold_65 . repeat_region 127770 127877 . ? . description=trf scaffold_65 . repeat_region 127832 127902 . ? . description=trf scaffold_65 . repeat_region 127883 128050 . ? . description=trf scaffold_65 . exon 118790 118891 . - . ID=Physo138608.3;Parent=Physo138608;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_65 . exon 118970 119205 . - . ID=Physo138608.2;Parent=Physo138608;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_65 . exon 119519 119649 . - . ID=Physo138608.1;Parent=Physo138608;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 ensembl protein_coding_gene 122083 123698 . + . ID=Physo138609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650028;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 122083 123698 . + . ID=Physo138609;Parent=Physo138609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 122083 122380 . + 0 ID=Physo138609;Parent=Physo138609;rank=1 scaffold_65 . exon 122083 122380 . + . ID=Physo138609.1;Parent=Physo138609;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . CDS 122456 123175 . + 0 ID=Physo138609;Parent=Physo138609;rank=2 scaffold_65 . exon 122456 123175 . + . ID=Physo138609.2;Parent=Physo138609;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 123232 123698 . + 0 ID=Physo138609;Parent=Physo138609;rank=3 scaffold_65 . exon 123232 123698 . + . ID=Physo138609.3;Parent=Physo138609;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 ensembl protein_coding_gene 123997 129783 . - . ID=Physo138610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650029;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 123997 129783 . - . ID=Physo138610;Parent=Physo138610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 123997 124032 . - 0 ID=Physo138610;Parent=Physo138610;rank=10 scaffold_65 . exon 123997 124032 . - . ID=Physo138610.10;Parent=Physo138610;constitutive=1;rank=10 scaffold_65 . CDS 124130 124422 . - 0 ID=Physo138610;Parent=Physo138610;rank=9 scaffold_65 . exon 124130 124422 . - . ID=Physo138610.9;Parent=Physo138610;constitutive=1;ensembl_phase=1;rank=9 scaffold_65 . CDS 124479 124575 . - 0 ID=Physo138610;Parent=Physo138610;rank=8 scaffold_65 . exon 124479 124575 . - . ID=Physo138610.8;Parent=Physo138610;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_65 . CDS 124849 125486 . - 0 ID=Physo138610;Parent=Physo138610;rank=7 scaffold_65 . exon 124849 125486 . - . ID=Physo138610.7;Parent=Physo138610;constitutive=1;ensembl_phase=1;rank=7 scaffold_65 . CDS 125588 126090 . - 0 ID=Physo138610;Parent=Physo138610;rank=6 scaffold_65 . exon 125588 126090 . - . ID=Physo138610.6;Parent=Physo138610;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_65 . CDS 126153 126762 . - 0 ID=Physo138610;Parent=Physo138610;rank=5 scaffold_65 . exon 126153 126762 . - . ID=Physo138610.5;Parent=Physo138610;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_65 . CDS 126870 128595 . - 0 ID=Physo138610;Parent=Physo138610;rank=4 scaffold_65 . exon 126870 128595 . - . ID=Physo138610.4;Parent=Physo138610;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_65 . CDS 129052 129360 . - 0 ID=Physo138610;Parent=Physo138610;rank=3 scaffold_65 . CDS 129548 129692 . - 0 ID=Physo138610;Parent=Physo138610;rank=2 scaffold_65 . CDS 129746 129783 . - 0 ID=Physo138610;Parent=Physo138610;rank=1 scaffold_65 ensembl protein_coding_gene 131603 133055 . - . ID=Physo109154;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_650001;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 131603 133055 . - . ID=Physo109154;Parent=Physo109154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 131603 132669 . - 0 ID=Physo109154;Parent=Physo109154;rank=3 scaffold_65 . exon 131603 132669 . - . ID=Physo109154.3;Parent=Physo109154;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 . CDS 132791 132919 . - 0 ID=Physo109154;Parent=Physo109154;rank=2 scaffold_65 . exon 132791 132919 . - . ID=Physo109154.2;Parent=Physo109154;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 132968 133055 . - 0 ID=Physo109154;Parent=Physo109154;rank=1 scaffold_65 . exon 132968 133055 . - . ID=Physo109154.1;Parent=Physo109154;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . exon 129052 129360 . - . ID=Physo138610.3;Parent=Physo138610;constitutive=1;rank=3 scaffold_65 . exon 129548 129692 . - . ID=Physo138610.2;Parent=Physo138610;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . exon 129746 129783 . - . ID=Physo138610.1;Parent=Physo138610;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 ensembl protein_coding_gene 130487 131493 . + . ID=Physo138611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650030;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 130487 131493 . + . ID=Physo138611;Parent=Physo138611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 130487 130713 . + . ID=Physo138611.1;Parent=Physo138611;constitutive=1;ensembl_phase=-1;rank=1 scaffold_65 . CDS 130537 130713 . + 0 ID=Physo138611;Parent=Physo138611;rank=1 scaffold_65 . CDS 130793 130879 . + 0 ID=Physo138611;Parent=Physo138611;rank=2 scaffold_65 . exon 130793 130879 . + . ID=Physo138611.2;Parent=Physo138611;constitutive=1;rank=2 scaffold_65 . CDS 130953 131492 . + 0 ID=Physo138611;Parent=Physo138611;rank=3 scaffold_65 . exon 130953 131493 . + . ID=Physo138611.3;Parent=Physo138611;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_65 ensembl protein_coding_gene 133302 135501 . - . ID=Physo138613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650032;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 133302 135501 . - . ID=Physo138613;Parent=Physo138613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 133302 133717 . - 0 ID=Physo138613;Parent=Physo138613;rank=2 scaffold_65 . exon 133302 133717 . - . ID=Physo138613.2;Parent=Physo138613;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 134058 135501 . - 0 ID=Physo138613;Parent=Physo138613;rank=1 scaffold_65 . exon 134058 135501 . - . ID=Physo138613.1;Parent=Physo138613;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . repeat_region 140250 140258 . ? . description=dust scaffold_65 . biological_region 140647 140651 0.999 + . logic_name=eponine scaffold_65 . biological_region 140781 140781 0.999 - . logic_name=eponine scaffold_65 . biological_region 141325 141330 0.999 + . logic_name=eponine scaffold_65 . repeat_region 141472 141532 . ? . description=dust scaffold_65 . repeat_region 141889 141911 . ? . description=trf scaffold_65 . biological_region 144652 144656 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 139615 141051 . + . ID=Physo138614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650033;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 139615 141051 . + . ID=Physo138614;Parent=Physo138614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 139615 139890 . + 0 ID=Physo138614;Parent=Physo138614;rank=1 scaffold_65 . exon 139615 139890 . + . ID=Physo138614.1;Parent=Physo138614;constitutive=1;rank=1 scaffold_65 . CDS 139978 140187 . + 0 ID=Physo138614;Parent=Physo138614;rank=2 scaffold_65 . exon 139978 140187 . + . ID=Physo138614.2;Parent=Physo138614;constitutive=1;rank=2 scaffold_65 . CDS 140350 141051 . + 0 ID=Physo138614;Parent=Physo138614;rank=3 scaffold_65 . exon 140350 141051 . + . ID=Physo138614.3;Parent=Physo138614;constitutive=1;rank=3 scaffold_65 ensembl protein_coding_gene 142592 146567 . + . ID=Physo138615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650034;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 142592 146567 . + . ID=Physo138615;Parent=Physo138615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 142592 143205 . + 0 ID=Physo138615;Parent=Physo138615;rank=1 scaffold_65 . exon 142592 143205 . + . ID=Physo138615.1;Parent=Physo138615;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 143456 143774 . + 0 ID=Physo138615;Parent=Physo138615;rank=2 scaffold_65 . exon 143456 143774 . + . ID=Physo138615.2;Parent=Physo138615;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 143831 144031 . + 0 ID=Physo138615;Parent=Physo138615;rank=3 scaffold_65 . exon 143831 144031 . + . ID=Physo138615.3;Parent=Physo138615;constitutive=1;rank=3 scaffold_65 . CDS 144109 144859 . + 0 ID=Physo138615;Parent=Physo138615;rank=4 scaffold_65 . exon 144109 144859 . + . ID=Physo138615.4;Parent=Physo138615;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_65 . CDS 145031 145428 . + 0 ID=Physo138615;Parent=Physo138615;rank=5 scaffold_65 . exon 145031 145428 . + . ID=Physo138615.5;Parent=Physo138615;constitutive=1;ensembl_phase=1;rank=5 scaffold_65 . CDS 145477 145704 . + 0 ID=Physo138615;Parent=Physo138615;rank=6 scaffold_65 . exon 145477 145704 . + . ID=Physo138615.6;Parent=Physo138615;constitutive=1;rank=6 scaffold_65 . CDS 145788 146567 . + 0 ID=Physo138615;Parent=Physo138615;rank=7 scaffold_65 . exon 145788 146567 . + . ID=Physo138615.7;Parent=Physo138615;constitutive=1;rank=7 scaffold_65 ensembl protein_coding_gene 148416 150050 . + . ID=Physo138616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650035;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 148416 150050 . + . ID=Physo138616;Parent=Physo138616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 148416 148901 . + . ID=Physo138616.1;Parent=Physo138616;constitutive=1;ensembl_phase=-1;rank=1 scaffold_65 . CDS 148425 148901 . + 0 ID=Physo138616;Parent=Physo138616;rank=1 scaffold_65 . CDS 148981 149184 . + 0 ID=Physo138616;Parent=Physo138616;rank=2 scaffold_65 . exon 148981 149184 . + . ID=Physo138616.2;Parent=Physo138616;constitutive=1;rank=2 scaffold_65 . CDS 149265 150050 . + 0 ID=Physo138616;Parent=Physo138616;rank=3 scaffold_65 . exon 149265 150050 . + . ID=Physo138616.3;Parent=Physo138616;constitutive=1;rank=3 scaffold_65 ensembl protein_coding_gene 150208 150771 . + . ID=Physo138617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650036;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 150208 150771 . + . ID=Physo138617;Parent=Physo138617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 150208 150771 . + 0 ID=Physo138617;Parent=Physo138617;rank=1 scaffold_65 . exon 150208 150771 . + . ID=Physo138617.1;Parent=Physo138617;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 151750 152969 . + . ID=Physo138618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650037;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 151750 152969 . + . ID=Physo138618;Parent=Physo138618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 151750 152001 . + 0 ID=Physo138618;Parent=Physo138618;rank=1 scaffold_65 . exon 151750 152001 . + . ID=Physo138618.1;Parent=Physo138618;constitutive=1;rank=1 scaffold_65 . CDS 152118 152969 . + 0 ID=Physo138618;Parent=Physo138618;rank=2 scaffold_65 . exon 152118 152969 . + . ID=Physo138618.2;Parent=Physo138618;constitutive=1;rank=2 scaffold_65 ensembl protein_coding_gene 156324 163495 . + . ID=Physo138619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650038;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 156324 163495 . + . ID=Physo138619;Parent=Physo138619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 156324 159707 . + 0 ID=Physo138619;Parent=Physo138619;rank=1 scaffold_65 . exon 156324 159707 . + . ID=Physo138619.1;Parent=Physo138619;constitutive=1;rank=1 scaffold_65 . CDS 159731 160021 . + 0 ID=Physo138619;Parent=Physo138619;rank=2 scaffold_65 . CDS 160355 160573 . + 0 ID=Physo138619;Parent=Physo138619;rank=3 scaffold_65 . CDS 160939 161126 . + 0 ID=Physo138619;Parent=Physo138619;rank=4 scaffold_65 . CDS 161150 161430 . + 0 ID=Physo138619;Parent=Physo138619;rank=5 scaffold_65 . CDS 161535 162690 . + 0 ID=Physo138619;Parent=Physo138619;rank=6 scaffold_65 . CDS 162935 163234 . + 0 ID=Physo138619;Parent=Physo138619;rank=7 scaffold_65 . CDS 163345 163495 . + 0 ID=Physo138619;Parent=Physo138619;rank=8 scaffold_65 . biological_region 158037 158037 0.999 + . logic_name=eponine scaffold_65 . repeat_region 158266 158322 . ? . description=trf scaffold_65 . biological_region 158313 158314 0.999 + . logic_name=eponine scaffold_65 . biological_region 158445 158447 0.999 + . logic_name=eponine scaffold_65 . repeat_region 158607 158627 . ? . description=trf scaffold_65 . biological_region 158670 158674 0.999 + . logic_name=eponine scaffold_65 . biological_region 159256 159260 0.999 + . logic_name=eponine scaffold_65 . biological_region 159276 159277 0.999 + . logic_name=eponine scaffold_65 . biological_region 162561 162561 0.999 + . logic_name=eponine scaffold_65 . biological_region 162591 162593 0.999 + . logic_name=eponine scaffold_65 . biological_region 162626 162627 0.999 - . logic_name=eponine scaffold_65 . repeat_region 167183 167232 . ? . description=trf scaffold_65 . exon 159731 160021 . + . ID=Physo138619.2;Parent=Physo138619;constitutive=1;rank=2 scaffold_65 . exon 160355 160573 . + . ID=Physo138619.3;Parent=Physo138619;constitutive=1;rank=3 scaffold_65 . exon 160939 161126 . + . ID=Physo138619.4;Parent=Physo138619;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_65 . exon 161150 161430 . + . ID=Physo138619.5;Parent=Physo138619;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_65 . exon 161535 162690 . + . ID=Physo138619.6;Parent=Physo138619;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_65 . exon 162935 163234 . + . ID=Physo138619.7;Parent=Physo138619;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_65 . exon 163345 163495 . + . ID=Physo138619.8;Parent=Physo138619;constitutive=1;ensembl_phase=2;rank=8 scaffold_65 ensembl protein_coding_gene 166940 167432 . - . ID=Physo138620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650039;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 166940 167432 . - . ID=Physo138620;Parent=Physo138620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 166940 167143 . - 0 ID=Physo138620;Parent=Physo138620;rank=3 scaffold_65 . exon 166940 167143 . - . ID=Physo138620.3;Parent=Physo138620;constitutive=1;rank=3 scaffold_65 . CDS 167260 167392 . - 0 ID=Physo138620;Parent=Physo138620;rank=2 scaffold_65 . exon 167260 167392 . - . ID=Physo138620.2;Parent=Physo138620;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 167428 167432 . - 0 ID=Physo138620;Parent=Physo138620;rank=1 scaffold_65 . exon 167428 167432 . - . ID=Physo138620.1;Parent=Physo138620;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . repeat_region 169654 169661 . ? . description=dust scaffold_65 . repeat_region 169941 169958 . ? . description=dust scaffold_65 . repeat_region 170699 170715 . ? . description=dust scaffold_65 . repeat_region 173524 173561 . ? . description=dust scaffold_65 . repeat_region 174145 174166 . ? . description=dust scaffold_65 ensembl protein_coding_gene 171327 171539 . + . ID=Physo119552;biotype=protein_coding;external_name=estExt_Genewise1.C_650009;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 171327 171539 . + . ID=Physo119552;Parent=Physo119552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 171327 171539 . + 0 ID=Physo119552;Parent=Physo119552;rank=1 scaffold_65 . exon 171327 171539 . + . ID=Physo119552.1;Parent=Physo119552;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 172589 174322 . - . ID=Physo138621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650040;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 172589 174322 . - . ID=Physo138621;Parent=Physo138621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 172589 173068 . - 0 ID=Physo138621;Parent=Physo138621;rank=3 scaffold_65 . exon 172589 173068 . - . ID=Physo138621.3;Parent=Physo138621;constitutive=1;rank=3 scaffold_65 . CDS 173171 173497 . - 0 ID=Physo138621;Parent=Physo138621;rank=2 scaffold_65 . exon 173171 173497 . - . ID=Physo138621.2;Parent=Physo138621;constitutive=1;rank=2 scaffold_65 . CDS 173567 174322 . - 0 ID=Physo138621;Parent=Physo138621;rank=1 scaffold_65 . exon 173567 174322 . - . ID=Physo138621.1;Parent=Physo138621;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 174783 177049 . - . ID=Physo138622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650041;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 174783 177049 . - . ID=Physo138622;Parent=Physo138622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 174783 175290 . - . ID=Physo138622.4;Parent=Physo138622;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_65 . CDS 174850 175290 . - 0 ID=Physo138622;Parent=Physo138622;rank=4 scaffold_65 . CDS 175374 175700 . - 0 ID=Physo138622;Parent=Physo138622;rank=3 scaffold_65 . exon 175374 175700 . - . ID=Physo138622.3;Parent=Physo138622;constitutive=1;rank=3 scaffold_65 . CDS 175777 176028 . - 0 ID=Physo138622;Parent=Physo138622;rank=2 scaffold_65 . exon 175777 176028 . - . ID=Physo138622.2;Parent=Physo138622;constitutive=1;rank=2 scaffold_65 . CDS 176100 176942 . - 0 ID=Physo138622;Parent=Physo138622;rank=1 scaffold_65 . exon 176100 177049 . - . ID=Physo138622.1;Parent=Physo138622;constitutive=1;ensembl_phase=-1;rank=1 scaffold_65 . biological_region 185601 185608 0.999 - . logic_name=eponine scaffold_65 . biological_region 185834 185841 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 177599 179029 . + . ID=Physo138623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650042;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 177599 179029 . + . ID=Physo138623;Parent=Physo138623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 177599 177666 . + 0 ID=Physo138623;Parent=Physo138623;rank=1 scaffold_65 . exon 177599 177666 . + . ID=Physo138623.1;Parent=Physo138623;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 177733 177830 . + 0 ID=Physo138623;Parent=Physo138623;rank=2 scaffold_65 . exon 177733 177830 . + . ID=Physo138623.2;Parent=Physo138623;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 177910 178205 . + 0 ID=Physo138623;Parent=Physo138623;rank=3 scaffold_65 . exon 177910 178205 . + . ID=Physo138623.3;Parent=Physo138623;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 . CDS 178323 178344 . + 0 ID=Physo138623;Parent=Physo138623;rank=4 scaffold_65 . exon 178323 178344 . + . ID=Physo138623.4;Parent=Physo138623;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_65 . CDS 178456 178613 . + 0 ID=Physo138623;Parent=Physo138623;rank=5 scaffold_65 . exon 178456 178613 . + . ID=Physo138623.5;Parent=Physo138623;constitutive=1;ensembl_phase=1;rank=5 scaffold_65 . CDS 178679 179029 . + 0 ID=Physo138623;Parent=Physo138623;rank=6 scaffold_65 . exon 178679 179029 . + . ID=Physo138623.6;Parent=Physo138623;constitutive=1;rank=6 scaffold_65 ensembl protein_coding_gene 179327 180683 . + . ID=Physo138624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650043;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 179327 180683 . + . ID=Physo138624;Parent=Physo138624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 179327 179417 . + 0 ID=Physo138624;Parent=Physo138624;rank=1 scaffold_65 . exon 179327 179417 . + . ID=Physo138624.1;Parent=Physo138624;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . CDS 179502 179797 . + 0 ID=Physo138624;Parent=Physo138624;rank=2 scaffold_65 . exon 179502 179797 . + . ID=Physo138624.2;Parent=Physo138624;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 179878 180147 . + 0 ID=Physo138624;Parent=Physo138624;rank=3 scaffold_65 . exon 179878 180147 . + . ID=Physo138624.3;Parent=Physo138624;constitutive=1;rank=3 scaffold_65 . CDS 180231 180683 . + 0 ID=Physo138624;Parent=Physo138624;rank=4 scaffold_65 . exon 180231 180683 . + . ID=Physo138624.4;Parent=Physo138624;constitutive=1;rank=4 scaffold_65 ensembl protein_coding_gene 184996 186054 . + . ID=Physo138625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650044;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 184996 186054 . + . ID=Physo138625;Parent=Physo138625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 184996 186054 . + . ID=Physo138625.1;Parent=Physo138625;constitutive=1;ensembl_phase=-1;rank=1 scaffold_65 . CDS 184999 186054 . + 0 ID=Physo138625;Parent=Physo138625;rank=1 scaffold_65 . repeat_region 189555 189570 . ? . description=dust scaffold_65 . repeat_region 191625 191640 . ? . description=dust scaffold_65 . repeat_region 193687 193742 . ? . description=trf scaffold_65 ensembl protein_coding_gene 188831 189543 . - . ID=Physo138626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650045;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 188831 189543 . - . ID=Physo138626;Parent=Physo138626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 188831 189147 . - . ID=Physo138626.2;Parent=Physo138626;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_65 . CDS 188833 189147 . - 0 ID=Physo138626;Parent=Physo138626;rank=2 scaffold_65 . CDS 189364 189543 . - 0 ID=Physo138626;Parent=Physo138626;rank=1 scaffold_65 . exon 189364 189543 . - . ID=Physo138626.1;Parent=Physo138626;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 191212 191629 . - . ID=Physo138627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650046;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 191212 191629 . - . ID=Physo138627;Parent=Physo138627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 191212 191613 . - 0 ID=Physo138627;Parent=Physo138627;rank=1 scaffold_65 . exon 191212 191629 . - . ID=Physo138627.1;Parent=Physo138627;constitutive=1;ensembl_phase=-1;rank=1 scaffold_65 ensembl protein_coding_gene 196862 197695 . - . ID=Physo138628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650047;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 196862 197695 . - . ID=Physo138628;Parent=Physo138628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 196862 197217 . - 0 ID=Physo138628;Parent=Physo138628;rank=2 scaffold_65 . exon 196862 197217 . - . ID=Physo138628.2;Parent=Physo138628;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 197437 197695 . - 0 ID=Physo138628;Parent=Physo138628;rank=1 scaffold_65 . biological_region 201423 201430 0.999 - . logic_name=eponine scaffold_65 . biological_region 203443 203450 0.999 - . logic_name=eponine scaffold_65 . exon 197437 197695 . - . ID=Physo138628.1;Parent=Physo138628;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 ensembl protein_coding_gene 200585 201646 . + . ID=Physo138629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650048;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 200585 201646 . + . ID=Physo138629;Parent=Physo138629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 200585 201646 . + . ID=Physo138629.1;Parent=Physo138629;constitutive=1;ensembl_phase=-1;rank=1 scaffold_65 . CDS 200588 201646 . + 0 ID=Physo138629;Parent=Physo138629;rank=1 scaffold_65 ensembl protein_coding_gene 202443 203824 . + . ID=Physo138630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650049;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 202443 203824 . + . ID=Physo138630;Parent=Physo138630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 202443 202486 . + . ID=Physo138630.1;Parent=Physo138630;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_65 . CDS 202482 202486 . + 0 ID=Physo138630;Parent=Physo138630;rank=1 scaffold_65 . CDS 202613 203669 . + 0 ID=Physo138630;Parent=Physo138630;rank=2 scaffold_65 . exon 202613 203824 . + . ID=Physo138630.2;Parent=Physo138630;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_65 ensembl protein_coding_gene 204374 205796 . + . ID=Physo138631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650050;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 204374 205796 . + . ID=Physo138631;Parent=Physo138631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 204374 204378 . + 0 ID=Physo138631;Parent=Physo138631;rank=1 scaffold_65 . exon 204374 204378 . + . ID=Physo138631.1;Parent=Physo138631;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 204447 204704 . + 0 ID=Physo138631;Parent=Physo138631;rank=2 scaffold_65 . exon 204447 204704 . + . ID=Physo138631.2;Parent=Physo138631;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_65 . CDS 204781 205323 . + 0 ID=Physo138631;Parent=Physo138631;rank=3 scaffold_65 . exon 204781 205323 . + . ID=Physo138631.3;Parent=Physo138631;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_65 . CDS 205406 205796 . + 0 ID=Physo138631;Parent=Physo138631;rank=4 scaffold_65 . exon 205406 205796 . + . ID=Physo138631.4;Parent=Physo138631;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 ensembl protein_coding_gene 205978 209942 . - . ID=Physo138632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650051;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 205978 209942 . - . ID=Physo138632;Parent=Physo138632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 205978 208350 . - 0 ID=Physo138632;Parent=Physo138632;rank=4 scaffold_65 . exon 205978 208350 . - . ID=Physo138632.4;Parent=Physo138632;constitutive=1;rank=4 scaffold_65 . CDS 208414 209633 . - 0 ID=Physo138632;Parent=Physo138632;rank=3 scaffold_65 . CDS 209705 209807 . - 0 ID=Physo138632;Parent=Physo138632;rank=2 scaffold_65 . CDS 209901 209942 . - 0 ID=Physo138632;Parent=Physo138632;rank=1 scaffold_65 . repeat_region 211243 211264 . ? . description=trf scaffold_65 . repeat_region 214737 215085 . ? . description=dust scaffold_65 . exon 208414 209633 . - . ID=Physo138632.3;Parent=Physo138632;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 . exon 209705 209807 . - . ID=Physo138632.2;Parent=Physo138632;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_65 . exon 209901 209942 . - . ID=Physo138632.1;Parent=Physo138632;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 210343 210882 . + . ID=Physo138633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650052;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 210343 210882 . + . ID=Physo138633;Parent=Physo138633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 210343 210882 . + . ID=Physo138633.1;Parent=Physo138633;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_65 . CDS 210345 210674 . + 0 ID=Physo138633;Parent=Physo138633;rank=1 scaffold_65 ensembl protein_coding_gene 213232 213872 . + . ID=Physo138634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650053;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 213232 213872 . + . ID=Physo138634;Parent=Physo138634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 213232 213872 . + . ID=Physo138634.1;Parent=Physo138634;constitutive=1;ensembl_phase=-1;rank=1 scaffold_65 . CDS 213363 213872 . + 0 ID=Physo138634;Parent=Physo138634;rank=1 scaffold_65 ensembl protein_coding_gene 214576 217384 . + . ID=Physo138635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650054;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 214576 217384 . + . ID=Physo138635;Parent=Physo138635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 214576 214629 . + 0 ID=Physo138635;Parent=Physo138635;rank=1 scaffold_65 . exon 214576 214629 . + . ID=Physo138635.1;Parent=Physo138635;constitutive=1;rank=1 scaffold_65 . CDS 215098 215455 . + 0 ID=Physo138635;Parent=Physo138635;rank=2 scaffold_65 . exon 215098 215455 . + . ID=Physo138635.2;Parent=Physo138635;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_65 . CDS 215533 215995 . + 0 ID=Physo138635;Parent=Physo138635;rank=3 scaffold_65 . exon 215533 215995 . + . ID=Physo138635.3;Parent=Physo138635;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_65 . CDS 216067 217384 . + 0 ID=Physo138635;Parent=Physo138635;rank=4 scaffold_65 . exon 216067 217384 . + . ID=Physo138635.4;Parent=Physo138635;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 . biological_region 217409 217411 0.999 + . logic_name=eponine scaffold_65 . biological_region 218118 218122 0.999 - . logic_name=eponine scaffold_65 . biological_region 218149 218153 0.999 + . logic_name=eponine scaffold_65 . biological_region 218156 218156 0.999 - . logic_name=eponine scaffold_65 . biological_region 218308 218309 0.999 + . logic_name=eponine scaffold_65 . biological_region 218341 218343 0.999 + . logic_name=eponine scaffold_65 . biological_region 218368 218371 0.999 + . logic_name=eponine scaffold_65 . biological_region 218437 218444 0.999 - . logic_name=eponine scaffold_65 . biological_region 218452 218456 0.999 - . logic_name=eponine scaffold_65 . biological_region 218472 218477 0.999 - . logic_name=eponine scaffold_65 . biological_region 218495 218500 0.999 - . logic_name=eponine scaffold_65 . biological_region 218535 218543 0.999 - . logic_name=eponine scaffold_65 . biological_region 218591 218598 0.999 + . logic_name=eponine scaffold_65 . biological_region 218721 218724 0.999 + . logic_name=eponine scaffold_65 . biological_region 219080 219084 0.999 - . logic_name=eponine scaffold_65 . biological_region 219108 219115 0.999 - . logic_name=eponine scaffold_65 . biological_region 219166 219170 0.999 + . logic_name=eponine scaffold_65 . biological_region 220202 220203 0.999 + . logic_name=eponine scaffold_65 . biological_region 220988 220994 0.999 + . logic_name=eponine scaffold_65 . biological_region 221243 221251 0.999 + . logic_name=eponine scaffold_65 . biological_region 221290 221291 0.999 + . logic_name=eponine scaffold_65 . biological_region 221306 221311 0.999 + . logic_name=eponine scaffold_65 . biological_region 221340 221345 0.999 - . logic_name=eponine scaffold_65 . biological_region 221379 221383 0.999 - . logic_name=eponine scaffold_65 . biological_region 221572 221575 0.999 - . logic_name=eponine scaffold_65 . biological_region 222536 222539 0.999 - . logic_name=eponine scaffold_65 . biological_region 224870 224876 0.999 - . logic_name=eponine scaffold_65 . biological_region 225115 225115 0.999 - . logic_name=eponine scaffold_65 . biological_region 225562 225563 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 217373 218624 . - . ID=Physo138636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650055;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 217373 218624 . - . ID=Physo138636;Parent=Physo138636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 217373 218383 . - . ID=Physo138636.2;Parent=Physo138636;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_65 . CDS 217609 218383 . - 0 ID=Physo138636;Parent=Physo138636;rank=2 scaffold_65 . CDS 218455 218624 . - 0 ID=Physo138636;Parent=Physo138636;rank=1 scaffold_65 . exon 218455 218624 . - . ID=Physo138636.1;Parent=Physo138636;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 ensembl protein_coding_gene 220261 220901 . - . ID=Physo138637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650056;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 220261 220901 . - . ID=Physo138637;Parent=Physo138637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 220261 220770 . - 0 ID=Physo138637;Parent=Physo138637;rank=1 scaffold_65 . exon 220261 220901 . - . ID=Physo138637.1;Parent=Physo138637;constitutive=1;ensembl_phase=-1;rank=1 scaffold_65 ensembl protein_coding_gene 223225 224995 . - . ID=Physo138638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650057;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 223225 224995 . - . ID=Physo138638;Parent=Physo138638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 223225 223776 . - . ID=Physo138638.6;Parent=Physo138638;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_65 . CDS 223450 223776 . - 0 ID=Physo138638;Parent=Physo138638;rank=6 scaffold_65 . CDS 223881 223987 . - 0 ID=Physo138638;Parent=Physo138638;rank=5 scaffold_65 . exon 223881 223987 . - . ID=Physo138638.5;Parent=Physo138638;constitutive=1;ensembl_phase=1;rank=5 scaffold_65 . CDS 224055 224066 . - 0 ID=Physo138638;Parent=Physo138638;rank=4 scaffold_65 . exon 224055 224066 . - . ID=Physo138638.4;Parent=Physo138638;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_65 . CDS 224104 224224 . - 0 ID=Physo138638;Parent=Physo138638;rank=3 scaffold_65 . exon 224104 224224 . - . ID=Physo138638.3;Parent=Physo138638;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_65 . CDS 224290 224480 . - 0 ID=Physo138638;Parent=Physo138638;rank=2 scaffold_65 . exon 224290 224480 . - . ID=Physo138638.2;Parent=Physo138638;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 224550 224961 . - 0 ID=Physo138638;Parent=Physo138638;rank=1 scaffold_65 . exon 224550 224995 . - . ID=Physo138638.1;Parent=Physo138638;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_65 ensembl protein_coding_gene 225165 226207 . + . ID=Physo138639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650058;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 225165 226207 . + . ID=Physo138639;Parent=Physo138639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 225165 225245 . + . ID=Physo138639.1;Parent=Physo138639;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_65 . CDS 225188 225245 . + 0 ID=Physo138639;Parent=Physo138639;rank=1 scaffold_65 . CDS 225347 225838 . + 0 ID=Physo138639;Parent=Physo138639;rank=2 scaffold_65 . exon 225347 225838 . + . ID=Physo138639.2;Parent=Physo138639;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 225915 226207 . + 0 ID=Physo138639;Parent=Physo138639;rank=3 scaffold_65 . exon 225915 226207 . + . ID=Physo138639.3;Parent=Physo138639;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 ensembl protein_coding_gene 226414 230133 . - . ID=Physo157859;biotype=protein_coding;external_name=C_scaffold_65000006;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 226414 230133 . - . ID=Physo157859;Parent=Physo157859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 226414 226624 . - 0 ID=Physo157859;Parent=Physo157859;rank=8 scaffold_65 . exon 226414 226624 . - . ID=Physo157859.8;Parent=Physo157859;constitutive=1;ensembl_phase=2;rank=8 scaffold_65 . CDS 226703 226780 . - 0 ID=Physo157859;Parent=Physo157859;rank=7 scaffold_65 . exon 226703 226780 . - . ID=Physo157859.7;Parent=Physo157859;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_65 . CDS 226848 226987 . - 0 ID=Physo157859;Parent=Physo157859;rank=6 scaffold_65 . exon 226848 226987 . - . ID=Physo157859.6;Parent=Physo157859;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_65 . CDS 227058 227565 . - 0 ID=Physo157859;Parent=Physo157859;rank=5 scaffold_65 . CDS 227636 227703 . - 0 ID=Physo157859;Parent=Physo157859;rank=4 scaffold_65 . CDS 227790 227885 . - 0 ID=Physo157859;Parent=Physo157859;rank=3 scaffold_65 . CDS 228049 229711 . - 0 ID=Physo157859;Parent=Physo157859;rank=2 scaffold_65 . CDS 229739 230133 . - 0 ID=Physo157859;Parent=Physo157859;rank=1 scaffold_65 . repeat_region 230649 230659 . ? . description=dust scaffold_65 . repeat_region 231089 231125 . ? . description=trf scaffold_65 . repeat_region 231093 231125 . ? . description=dust scaffold_65 ensembl protein_coding_gene 234748 237669 . - . ID=Physo119559;biotype=protein_coding;external_name=estExt_Genewise1.C_650016;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 234748 237669 . - . ID=Physo119559;Parent=Physo119559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 234748 234778 . - 0 ID=Physo119559;Parent=Physo119559;rank=9 scaffold_65 . exon 234748 234778 . - . ID=Physo119559.9;Parent=Physo119559;constitutive=1;ensembl_phase=2;rank=9 scaffold_65 . CDS 234845 234894 . - 0 ID=Physo119559;Parent=Physo119559;rank=8 scaffold_65 . exon 234845 234894 . - . ID=Physo119559.8;Parent=Physo119559;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_65 . CDS 234953 235101 . - 0 ID=Physo119559;Parent=Physo119559;rank=7 scaffold_65 . exon 234953 235101 . - . ID=Physo119559.7;Parent=Physo119559;constitutive=1;ensembl_phase=1;rank=7 scaffold_65 . CDS 235172 236243 . - 0 ID=Physo119559;Parent=Physo119559;rank=6 scaffold_65 . exon 235172 236243 . - . ID=Physo119559.6;Parent=Physo119559;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_65 . CDS 236320 236448 . - 0 ID=Physo119559;Parent=Physo119559;rank=5 scaffold_65 . exon 236320 236448 . - . ID=Physo119559.5;Parent=Physo119559;constitutive=1;rank=5 scaffold_65 . CDS 236516 236681 . - 0 ID=Physo119559;Parent=Physo119559;rank=4 scaffold_65 . exon 236516 236681 . - . ID=Physo119559.4;Parent=Physo119559;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 . CDS 236754 236998 . - 0 ID=Physo119559;Parent=Physo119559;rank=3 scaffold_65 . CDS 237076 237250 . - 0 ID=Physo119559;Parent=Physo119559;rank=2 scaffold_65 . CDS 237323 237636 . - 0 ID=Physo119559;Parent=Physo119559;rank=1 scaffold_65 ensembl protein_coding_gene 231933 234609 . + . ID=Physo138641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650060;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 231933 234609 . + . ID=Physo138641;Parent=Physo138641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 231933 232265 . + 0 ID=Physo138641;Parent=Physo138641;rank=1 scaffold_65 . exon 231933 232265 . + . ID=Physo138641.1;Parent=Physo138641;constitutive=1;rank=1 scaffold_65 . CDS 232348 234609 . + 0 ID=Physo138641;Parent=Physo138641;rank=2 scaffold_65 . exon 232348 234609 . + . ID=Physo138641.2;Parent=Physo138641;constitutive=1;rank=2 scaffold_65 . exon 227058 227565 . - . ID=Physo157859.5;Parent=Physo157859;constitutive=1;ensembl_phase=2;rank=5 scaffold_65 . exon 227636 227703 . - . ID=Physo157859.4;Parent=Physo157859;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_65 . exon 227790 227885 . - . ID=Physo157859.3;Parent=Physo157859;constitutive=1;rank=3 scaffold_65 . exon 228049 229711 . - . ID=Physo157859.2;Parent=Physo157859;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . exon 229739 230133 . - . ID=Physo157859.1;Parent=Physo157859;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . biological_region 237358 237360 0.999 + . logic_name=eponine scaffold_65 . biological_region 237432 237435 0.999 + . logic_name=eponine scaffold_65 . biological_region 237636 237636 0.999 - . logic_name=eponine scaffold_65 . biological_region 238190 238190 0.999 + . logic_name=eponine scaffold_65 . biological_region 238202 238202 0.999 + . logic_name=eponine scaffold_65 . biological_region 238824 238828 0.999 - . logic_name=eponine scaffold_65 . biological_region 244251 244251 0.999 + . logic_name=eponine scaffold_65 . biological_region 245699 245702 0.999 + . logic_name=eponine scaffold_65 . biological_region 245903 245907 0.999 - . logic_name=eponine scaffold_65 . biological_region 246066 246071 0.999 + . logic_name=eponine scaffold_65 . biological_region 246082 246083 0.999 - . logic_name=eponine scaffold_65 . biological_region 246119 246121 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 244267 246657 . - . ID=Physo109155;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_650002;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 244267 246657 . - . ID=Physo109155;Parent=Physo109155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 244267 244352 . - 0 ID=Physo109155;Parent=Physo109155;rank=2 scaffold_65 . exon 244267 244352 . - . ID=Physo109155.2;Parent=Physo109155;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 244377 246657 . - 0 ID=Physo109155;Parent=Physo109155;rank=1 scaffold_65 . exon 244377 246657 . - . ID=Physo109155.1;Parent=Physo109155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . exon 236754 236998 . - . ID=Physo119559.3;Parent=Physo119559;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_65 . exon 237076 237250 . - . ID=Physo119559.2;Parent=Physo119559;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . exon 237323 237669 . - . ID=Physo119559.1;Parent=Physo119559;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_65 ensembl protein_coding_gene 238036 239221 . + . ID=Physo138643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650062;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 238036 239221 . + . ID=Physo138643;Parent=Physo138643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 238036 238575 . + 0 ID=Physo138643;Parent=Physo138643;rank=1 scaffold_65 . exon 238036 238575 . + . ID=Physo138643.1;Parent=Physo138643;constitutive=1;rank=1 scaffold_65 . CDS 238680 238792 . + 0 ID=Physo138643;Parent=Physo138643;rank=2 scaffold_65 . exon 238680 238792 . + . ID=Physo138643.2;Parent=Physo138643;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_65 . CDS 238861 238938 . + 0 ID=Physo138643;Parent=Physo138643;rank=3 scaffold_65 . exon 238861 238938 . + . ID=Physo138643.3;Parent=Physo138643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_65 . CDS 239041 239221 . + 0 ID=Physo138643;Parent=Physo138643;rank=4 scaffold_65 . exon 239041 239221 . + . ID=Physo138643.4;Parent=Physo138643;constitutive=1;ensembl_phase=2;rank=4 scaffold_65 ensembl protein_coding_gene 239723 241941 . - . ID=Physo138644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650063;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 239723 241941 . - . ID=Physo138644;Parent=Physo138644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 239723 241941 . - . ID=Physo138644.1;Parent=Physo138644;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_65 . CDS 239760 241874 . - 0 ID=Physo138644;Parent=Physo138644;rank=1 scaffold_65 . repeat_region 247194 247248 . ? . description=trf scaffold_65 . repeat_region 248889 248922 . ? . description=trf scaffold_65 . repeat_region 248994 249016 . ? . description=trf scaffold_65 . repeat_region 249443 249776 . + . description=Polinton-1_PI scaffold_65 . repeat_region 249814 251040 . - . description=Polinton-1_PI scaffold_65 . repeat_region 251051 251129 . ? . description=trf scaffold_65 . repeat_region 251430 251452 . ? . description=trf scaffold_65 . repeat_region 251524 251557 . ? . description=trf scaffold_65 . repeat_region 256196 256226 . ? . description=dust scaffold_65 . biological_region 259033 259037 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 258902 259438 . - . ID=Physo109156;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_650003;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 258902 259438 . - . ID=Physo109156;Parent=Physo109156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 258902 259438 . - 0 ID=Physo109156;Parent=Physo109156;rank=1 scaffold_65 . exon 258902 259438 . - . ID=Physo109156.1;Parent=Physo109156;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 256537 258754 . - . ID=Physo138646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650065;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 256537 258754 . - . ID=Physo138646;Parent=Physo138646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 256537 257115 . - 0 ID=Physo138646;Parent=Physo138646;rank=3 scaffold_65 . exon 256537 257115 . - . ID=Physo138646.3;Parent=Physo138646;constitutive=1;rank=3 scaffold_65 . CDS 257315 258205 . - 0 ID=Physo138646;Parent=Physo138646;rank=2 scaffold_65 . exon 257315 258205 . - . ID=Physo138646.2;Parent=Physo138646;constitutive=1;rank=2 scaffold_65 . CDS 258467 258754 . - 0 ID=Physo138646;Parent=Physo138646;rank=1 scaffold_65 . exon 258467 258754 . - . ID=Physo138646.1;Parent=Physo138646;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 259548 260804 . - . ID=Physo138648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650067;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 259548 260804 . - . ID=Physo138648;Parent=Physo138648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 259548 260052 . - 0 ID=Physo138648;Parent=Physo138648;rank=2 scaffold_65 . exon 259548 260052 . - . ID=Physo138648.2;Parent=Physo138648;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 260107 260804 . - 0 ID=Physo138648;Parent=Physo138648;rank=1 scaffold_65 . exon 260107 260804 . - . ID=Physo138648.1;Parent=Physo138648;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 ensembl protein_coding_gene 261479 263923 . - . ID=Physo138649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650068;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 261479 263923 . - . ID=Physo138649;Parent=Physo138649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 261479 262580 . - 0 ID=Physo138649;Parent=Physo138649;rank=5 scaffold_65 . exon 261479 262580 . - . ID=Physo138649.5;Parent=Physo138649;constitutive=1;ensembl_phase=2;rank=5 scaffold_65 . CDS 262670 262788 . - 0 ID=Physo138649;Parent=Physo138649;rank=4 scaffold_65 . exon 262670 262788 . - . ID=Physo138649.4;Parent=Physo138649;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_65 . CDS 262998 263141 . - 0 ID=Physo138649;Parent=Physo138649;rank=3 scaffold_65 . exon 262998 263141 . - . ID=Physo138649.3;Parent=Physo138649;constitutive=1;rank=3 scaffold_65 . CDS 263205 263411 . - 0 ID=Physo138649;Parent=Physo138649;rank=2 scaffold_65 . exon 263205 263411 . - . ID=Physo138649.2;Parent=Physo138649;constitutive=1;rank=2 scaffold_65 . CDS 263459 263923 . - 0 ID=Physo138649;Parent=Physo138649;rank=1 scaffold_65 . exon 263459 263923 . - . ID=Physo138649.1;Parent=Physo138649;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 264530 265303 . + . ID=Physo138650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650069;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 264530 265303 . + . ID=Physo138650;Parent=Physo138650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 264530 265303 . + 0 ID=Physo138650;Parent=Physo138650;rank=1 scaffold_65 . exon 264530 265303 . + . ID=Physo138650.1;Parent=Physo138650;constitutive=1;rank=1 scaffold_65 . repeat_region 268501 268508 . ? . description=dust scaffold_65 . repeat_region 269905 269931 . ? . description=trf scaffold_65 . repeat_region 275695 275715 . ? . description=trf scaffold_65 ensembl protein_coding_gene 267012 268151 . + . ID=Physo109157;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_650004;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 267012 268151 . + . ID=Physo109157;Parent=Physo109157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 267012 268151 . + 0 ID=Physo109157;Parent=Physo109157;rank=1 scaffold_65 . exon 267012 268151 . + . ID=Physo109157.1;Parent=Physo109157;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 271199 272068 . + . ID=Physo109158;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_650005;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 271199 272068 . + . ID=Physo109158;Parent=Physo109158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 271199 272068 . + 0 ID=Physo109158;Parent=Physo109158;rank=1 scaffold_65 . exon 271199 272068 . + . ID=Physo109158.1;Parent=Physo109158;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 269498 270808 . + . ID=Physo138652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650071;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 269498 270808 . + . ID=Physo138652;Parent=Physo138652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 269498 270808 . + 0 ID=Physo138652;Parent=Physo138652;rank=1 scaffold_65 . exon 269498 270808 . + . ID=Physo138652.1;Parent=Physo138652;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 272106 273261 . - . ID=Physo138654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650073;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 272106 273261 . - . ID=Physo138654;Parent=Physo138654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 272106 273112 . - . ID=Physo138654.2;Parent=Physo138654;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_65 . CDS 272196 273112 . - 0 ID=Physo138654;Parent=Physo138654;rank=2 scaffold_65 . CDS 273184 273247 . - 0 ID=Physo138654;Parent=Physo138654;rank=1 scaffold_65 . exon 273184 273261 . - . ID=Physo138654.1;Parent=Physo138654;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_65 ensembl protein_coding_gene 273635 275776 . - . ID=Physo138655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650074;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 273635 275776 . - . ID=Physo138655;Parent=Physo138655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 273635 274454 . - 0 ID=Physo138655;Parent=Physo138655;rank=8 scaffold_65 . exon 273635 274454 . - . ID=Physo138655.8;Parent=Physo138655;constitutive=1;ensembl_phase=2;rank=8 scaffold_65 . CDS 274530 274672 . - 0 ID=Physo138655;Parent=Physo138655;rank=7 scaffold_65 . exon 274530 274672 . - . ID=Physo138655.7;Parent=Physo138655;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_65 . CDS 274743 274830 . - 0 ID=Physo138655;Parent=Physo138655;rank=6 scaffold_65 . exon 274743 274830 . - . ID=Physo138655.6;Parent=Physo138655;constitutive=1;ensembl_phase=2;rank=6 scaffold_65 . CDS 274908 274964 . - 0 ID=Physo138655;Parent=Physo138655;rank=5 scaffold_65 . exon 274908 274964 . - . ID=Physo138655.5;Parent=Physo138655;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_65 . CDS 275032 275213 . - 0 ID=Physo138655;Parent=Physo138655;rank=4 scaffold_65 . exon 275032 275213 . - . ID=Physo138655.4;Parent=Physo138655;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_65 . CDS 275288 275447 . - 0 ID=Physo138655;Parent=Physo138655;rank=3 scaffold_65 . exon 275288 275447 . - . ID=Physo138655.3;Parent=Physo138655;constitutive=1;ensembl_phase=2;rank=3 scaffold_65 . CDS 275521 275536 . - 0 ID=Physo138655;Parent=Physo138655;rank=2 scaffold_65 . exon 275521 275536 . - . ID=Physo138655.2;Parent=Physo138655;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_65 . CDS 275651 275654 . - 0 ID=Physo138655;Parent=Physo138655;rank=1 scaffold_65 . exon 275651 275776 . - . ID=Physo138655.1;Parent=Physo138655;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_65 . biological_region 278010 278013 0.999 + . logic_name=eponine scaffold_65 . biological_region 278046 278049 0.999 - . logic_name=eponine scaffold_65 . biological_region 278111 278116 0.999 - . logic_name=eponine scaffold_65 . biological_region 278147 278150 0.999 - . logic_name=eponine scaffold_65 . biological_region 278441 278444 0.999 - . logic_name=eponine scaffold_65 . biological_region 278640 278645 0.999 + . logic_name=eponine scaffold_65 . biological_region 278659 278659 0.999 - . logic_name=eponine scaffold_65 . biological_region 279322 279325 0.999 + . logic_name=eponine scaffold_65 . biological_region 279382 279384 0.999 + . logic_name=eponine scaffold_65 . biological_region 279470 279471 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 276226 278435 . - . ID=Physo138656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650075;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 276226 278435 . - . ID=Physo138656;Parent=Physo138656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . exon 276226 277560 . - . ID=Physo138656.5;Parent=Physo138656;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_65 . CDS 276483 277560 . - 0 ID=Physo138656;Parent=Physo138656;rank=5 scaffold_65 . CDS 277648 277704 . - 0 ID=Physo138656;Parent=Physo138656;rank=4 scaffold_65 . exon 277648 277704 . - . ID=Physo138656.4;Parent=Physo138656;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_65 . CDS 277797 278141 . - 0 ID=Physo138656;Parent=Physo138656;rank=3 scaffold_65 . exon 277797 278141 . - . ID=Physo138656.3;Parent=Physo138656;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_65 . CDS 278240 278252 . - 0 ID=Physo138656;Parent=Physo138656;rank=2 scaffold_65 . exon 278240 278252 . - . ID=Physo138656.2;Parent=Physo138656;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_65 . CDS 278346 278349 . - 0 ID=Physo138656;Parent=Physo138656;rank=1 scaffold_65 . exon 278346 278435 . - . ID=Physo138656.1;Parent=Physo138656;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_65 ensembl protein_coding_gene 281693 283321 . + . ID=Physo138658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650077;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 281693 283321 . + . ID=Physo138658;Parent=Physo138658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 281693 283321 . + 0 ID=Physo138658;Parent=Physo138658;rank=1 scaffold_65 . exon 281693 283321 . + . ID=Physo138658.1;Parent=Physo138658;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 283460 286584 . - . ID=Physo138659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650078;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 283460 286584 . - . ID=Physo138659;Parent=Physo138659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 283460 284178 . - 0 ID=Physo138659;Parent=Physo138659;rank=6 scaffold_65 . exon 283460 284178 . - . ID=Physo138659.6;Parent=Physo138659;constitutive=1;ensembl_phase=1;rank=6 scaffold_65 . CDS 284375 284907 . - 0 ID=Physo138659;Parent=Physo138659;rank=5 scaffold_65 . exon 284375 284907 . - . ID=Physo138659.5;Parent=Physo138659;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_65 . CDS 285103 285357 . - 0 ID=Physo138659;Parent=Physo138659;rank=4 scaffold_65 . exon 285103 285357 . - . ID=Physo138659.4;Parent=Physo138659;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_65 . CDS 285895 286043 . - 0 ID=Physo138659;Parent=Physo138659;rank=3 scaffold_65 . exon 285895 286043 . - . ID=Physo138659.3;Parent=Physo138659;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_65 . CDS 286074 286508 . - 0 ID=Physo138659;Parent=Physo138659;rank=2 scaffold_65 . CDS 286564 286584 . - 0 ID=Physo138659;Parent=Physo138659;rank=1 scaffold_65 ensembl protein_coding_gene 279312 280377 . + . ID=Physo157865;biotype=protein_coding;external_name=C_scaffold_65000012;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 279312 280377 . + . ID=Physo157865;Parent=Physo157865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 279312 279517 . + 0 ID=Physo157865;Parent=Physo157865;rank=1 scaffold_65 . exon 279312 279517 . + . ID=Physo157865.1;Parent=Physo157865;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 279584 279716 . + 0 ID=Physo157865;Parent=Physo157865;rank=2 scaffold_65 . exon 279584 279716 . + . ID=Physo157865.2;Parent=Physo157865;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 279781 280164 . + 0 ID=Physo157865;Parent=Physo157865;rank=3 scaffold_65 . exon 279781 280164 . + . ID=Physo157865.3;Parent=Physo157865;constitutive=1;rank=3 scaffold_65 . CDS 280238 280377 . + 0 ID=Physo157865;Parent=Physo157865;rank=4 scaffold_65 . exon 280238 280377 . + . ID=Physo157865.4;Parent=Physo157865;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_65 . exon 286074 286508 . - . ID=Physo138659.2;Parent=Physo138659;constitutive=1;rank=2 scaffold_65 . exon 286564 286584 . - . ID=Physo138659.1;Parent=Physo138659;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 287189 288779 . + . ID=Physo138660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650079;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 287189 288779 . + . ID=Physo138660;Parent=Physo138660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 287189 287481 . + 0 ID=Physo138660;Parent=Physo138660;rank=1 scaffold_65 . exon 287189 287481 . + . ID=Physo138660.1;Parent=Physo138660;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 287517 288490 . + 0 ID=Physo138660;Parent=Physo138660;rank=2 scaffold_65 . exon 287517 288490 . + . ID=Physo138660.2;Parent=Physo138660;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_65 . CDS 288535 288779 . + 0 ID=Physo138660;Parent=Physo138660;rank=3 scaffold_65 . exon 288535 288779 . + . ID=Physo138660.3;Parent=Physo138660;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 ensembl protein_coding_gene 289639 295198 . - . ID=Physo138661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650080;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 289639 295198 . - . ID=Physo138661;Parent=Physo138661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 289639 289848 . - 0 ID=Physo138661;Parent=Physo138661;rank=8 scaffold_65 . exon 289639 289848 . - . ID=Physo138661.8;Parent=Physo138661;constitutive=1;rank=8 scaffold_65 . CDS 289873 290998 . - 0 ID=Physo138661;Parent=Physo138661;rank=7 scaffold_65 . exon 289873 290998 . - . ID=Physo138661.7;Parent=Physo138661;constitutive=1;ensembl_phase=2;rank=7 scaffold_65 . CDS 291301 291806 . - 0 ID=Physo138661;Parent=Physo138661;rank=6 scaffold_65 . exon 291301 291806 . - . ID=Physo138661.6;Parent=Physo138661;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_65 . CDS 291921 292442 . - 0 ID=Physo138661;Parent=Physo138661;rank=5 scaffold_65 . exon 291921 292442 . - . ID=Physo138661.5;Parent=Physo138661;constitutive=1;rank=5 scaffold_65 . CDS 292496 293890 . - 0 ID=Physo138661;Parent=Physo138661;rank=4 scaffold_65 . exon 292496 293890 . - . ID=Physo138661.4;Parent=Physo138661;constitutive=1;rank=4 scaffold_65 . CDS 293914 294402 . - 0 ID=Physo138661;Parent=Physo138661;rank=3 scaffold_65 . exon 293914 294402 . - . ID=Physo138661.3;Parent=Physo138661;constitutive=1;rank=3 scaffold_65 . CDS 294423 294980 . - 0 ID=Physo138661;Parent=Physo138661;rank=2 scaffold_65 . exon 294423 294980 . - . ID=Physo138661.2;Parent=Physo138661;constitutive=1;rank=2 scaffold_65 . CDS 295001 295198 . - 0 ID=Physo138661;Parent=Physo138661;rank=1 scaffold_65 . exon 295001 295198 . - . ID=Physo138661.1;Parent=Physo138661;constitutive=1;rank=1 scaffold_65 . biological_region 296842 296844 0.999 - . logic_name=eponine scaffold_65 . repeat_region 297271 297330 . ? . description=trf scaffold_65 . repeat_region 297597 297676 . ? . description=trf scaffold_65 . biological_region 297602 297608 0.999 - . logic_name=eponine scaffold_65 . biological_region 297655 297660 0.999 - . logic_name=eponine scaffold_65 . repeat_region 297761 297811 . ? . description=trf scaffold_65 . biological_region 298553 298557 0.999 - . logic_name=eponine scaffold_65 . repeat_region 298956 298964 . ? . description=dust scaffold_65 . biological_region 302759 302760 0.999 + . logic_name=eponine scaffold_65 . repeat_region 304342 304357 . ? . description=dust scaffold_65 . repeat_region 304375 304384 . ? . description=dust scaffold_65 ensembl protein_coding_gene 296120 297552 . - . ID=Physo138662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650081;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 296120 297552 . - . ID=Physo138662;Parent=Physo138662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 296120 297042 . - 0 ID=Physo138662;Parent=Physo138662;rank=2 scaffold_65 . exon 296120 297042 . - . ID=Physo138662.2;Parent=Physo138662;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 297075 297552 . - 0 ID=Physo138662;Parent=Physo138662;rank=1 scaffold_65 . exon 297075 297552 . - . ID=Physo138662.1;Parent=Physo138662;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 ensembl protein_coding_gene 300895 303789 . - . ID=Physo138663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650082;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 300895 303789 . - . ID=Physo138663;Parent=Physo138663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 300895 300991 . - 0 ID=Physo138663;Parent=Physo138663;rank=11 scaffold_65 . exon 300895 300991 . - . ID=Physo138663.11;Parent=Physo138663;constitutive=1;ensembl_phase=2;rank=11 scaffold_65 . CDS 301077 301216 . - 0 ID=Physo138663;Parent=Physo138663;rank=10 scaffold_65 . exon 301077 301216 . - . ID=Physo138663.10;Parent=Physo138663;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_65 . CDS 301280 301666 . - 0 ID=Physo138663;Parent=Physo138663;rank=9 scaffold_65 . exon 301280 301666 . - . ID=Physo138663.9;Parent=Physo138663;constitutive=1;rank=9 scaffold_65 . CDS 301737 301866 . - 0 ID=Physo138663;Parent=Physo138663;rank=8 scaffold_65 . exon 301737 301866 . - . ID=Physo138663.8;Parent=Physo138663;constitutive=1;ensembl_phase=2;rank=8 scaffold_65 . CDS 301927 302012 . - 0 ID=Physo138663;Parent=Physo138663;rank=7 scaffold_65 . exon 301927 302012 . - . ID=Physo138663.7;Parent=Physo138663;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_65 . CDS 302080 302188 . - 0 ID=Physo138663;Parent=Physo138663;rank=6 scaffold_65 . exon 302080 302188 . - . ID=Physo138663.6;Parent=Physo138663;constitutive=1;ensembl_phase=2;rank=6 scaffold_65 . CDS 302347 302553 . - 0 ID=Physo138663;Parent=Physo138663;rank=5 scaffold_65 . exon 302347 302553 . - . ID=Physo138663.5;Parent=Physo138663;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_65 . CDS 302643 302720 . - 0 ID=Physo138663;Parent=Physo138663;rank=4 scaffold_65 . exon 302643 302720 . - . ID=Physo138663.4;Parent=Physo138663;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_65 . CDS 302787 303437 . - 0 ID=Physo138663;Parent=Physo138663;rank=3 scaffold_65 . exon 302787 303437 . - . ID=Physo138663.3;Parent=Physo138663;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_65 . CDS 303500 303585 . - 0 ID=Physo138663;Parent=Physo138663;rank=2 scaffold_65 . exon 303500 303585 . - . ID=Physo138663.2;Parent=Physo138663;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_65 . CDS 303655 303789 . - 0 ID=Physo138663;Parent=Physo138663;rank=1 scaffold_65 . exon 303655 303789 . - . ID=Physo138663.1;Parent=Physo138663;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 307136 308419 . - . ID=Physo138664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650083;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 307136 308419 . - . ID=Physo138664;Parent=Physo138664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 307136 307752 . - 0 ID=Physo138664;Parent=Physo138664;rank=4 scaffold_65 . exon 307136 307752 . - . ID=Physo138664.4;Parent=Physo138664;constitutive=1;ensembl_phase=1;rank=4 scaffold_65 . CDS 307776 307947 . - 0 ID=Physo138664;Parent=Physo138664;rank=3 scaffold_65 . exon 307776 307947 . - . ID=Physo138664.3;Parent=Physo138664;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_65 . CDS 308040 308102 . - 0 ID=Physo138664;Parent=Physo138664;rank=2 scaffold_65 . exon 308040 308102 . - . ID=Physo138664.2;Parent=Physo138664;constitutive=1;rank=2 scaffold_65 . CDS 308165 308419 . - 0 ID=Physo138664;Parent=Physo138664;rank=1 scaffold_65 . exon 308165 308419 . - . ID=Physo138664.1;Parent=Physo138664;constitutive=1;rank=1 scaffold_65 . repeat_region 318517 318532 . ? . description=dust scaffold_65 . biological_region 320271 320272 0.999 + . logic_name=eponine scaffold_65 . repeat_region 321816 321824 . ? . description=dust scaffold_65 . repeat_region 322819 322831 . ? . description=dust scaffold_65 . repeat_region 324707 324755 . ? . description=trf scaffold_65 ensembl protein_coding_gene 330168 339467 . + . ID=Physo138665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650084;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 330168 339467 . + . ID=Physo138665;Parent=Physo138665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 330168 330329 . + 0 ID=Physo138665;Parent=Physo138665;rank=1 scaffold_65 . exon 330168 330329 . + . ID=Physo138665.1;Parent=Physo138665;constitutive=1;rank=1 scaffold_65 . CDS 330413 330556 . + 0 ID=Physo138665;Parent=Physo138665;rank=2 scaffold_65 . exon 330413 330556 . + . ID=Physo138665.2;Parent=Physo138665;constitutive=1;rank=2 scaffold_65 . CDS 330662 330754 . + 0 ID=Physo138665;Parent=Physo138665;rank=3 scaffold_65 . exon 330662 330754 . + . ID=Physo138665.3;Parent=Physo138665;constitutive=1;rank=3 scaffold_65 . CDS 330798 331722 . + 0 ID=Physo138665;Parent=Physo138665;rank=4 scaffold_65 . exon 330798 331722 . + . ID=Physo138665.4;Parent=Physo138665;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_65 . CDS 331872 331881 . + 0 ID=Physo138665;Parent=Physo138665;rank=5 scaffold_65 . exon 331872 331881 . + . ID=Physo138665.5;Parent=Physo138665;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_65 . CDS 332338 332398 . + 0 ID=Physo138665;Parent=Physo138665;rank=6 scaffold_65 . exon 332338 332398 . + . ID=Physo138665.6;Parent=Physo138665;constitutive=1;ensembl_phase=2;rank=6 scaffold_65 . CDS 332620 337758 . + 0 ID=Physo138665;Parent=Physo138665;rank=7 scaffold_65 . exon 332620 337758 . + . ID=Physo138665.7;Parent=Physo138665;constitutive=1;rank=7 scaffold_65 . CDS 337982 338981 . + 0 ID=Physo138665;Parent=Physo138665;rank=8 scaffold_65 . CDS 339005 339171 . + 0 ID=Physo138665;Parent=Physo138665;rank=9 scaffold_65 . CDS 339276 339467 . + 0 ID=Physo138665;Parent=Physo138665;rank=10 scaffold_65 . repeat_region 340627 340634 . ? . description=dust scaffold_65 . repeat_region 340904 340937 . ? . description=trf scaffold_65 . exon 337982 338981 . + . ID=Physo138665.8;Parent=Physo138665;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_65 . exon 339005 339171 . + . ID=Physo138665.9;Parent=Physo138665;constitutive=1;ensembl_phase=1;rank=9 scaffold_65 . exon 339276 339467 . + . ID=Physo138665.10;Parent=Physo138665;constitutive=1;rank=10 scaffold_65 . biological_region 350516 350519 0.999 + . logic_name=eponine scaffold_65 . biological_region 350662 350663 0.999 - . logic_name=eponine scaffold_65 . repeat_region 353879 355053 . + . description=GypsyPi-1c_I-int scaffold_65 . repeat_region 355057 355179 . + . description=GypsyPi-1c_I-int scaffold_65 ensembl protein_coding_gene 350406 350717 . + . ID=Physo138666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650085;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 350406 350717 . + . ID=Physo138666;Parent=Physo138666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 350406 350717 . + 0 ID=Physo138666;Parent=Physo138666;rank=1 scaffold_65 . exon 350406 350717 . + . ID=Physo138666.1;Parent=Physo138666;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 353663 356824 . + . ID=Physo138667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650086;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 353663 356824 . + . ID=Physo138667;Parent=Physo138667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 353663 354635 . + 0 ID=Physo138667;Parent=Physo138667;rank=1 scaffold_65 . exon 353663 354635 . + . ID=Physo138667.1;Parent=Physo138667;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . CDS 354797 354945 . + 0 ID=Physo138667;Parent=Physo138667;rank=2 scaffold_65 . exon 354797 354945 . + . ID=Physo138667.2;Parent=Physo138667;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 355178 356824 . + 0 ID=Physo138667;Parent=Physo138667;rank=3 scaffold_65 . repeat_region 358835 358876 . ? . description=trf scaffold_65 . repeat_region 361614 361662 . ? . description=trf scaffold_65 . repeat_region 361843 361867 . ? . description=trf scaffold_65 . repeat_region 364874 364886 . ? . description=dust scaffold_65 . exon 355178 356824 . + . ID=Physo138667.3;Parent=Physo138667;constitutive=1;rank=3 scaffold_65 ensembl protein_coding_gene 358822 360587 . - . ID=Physo138668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650087;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 358822 360587 . - . ID=Physo138668;Parent=Physo138668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 358822 359900 . - 0 ID=Physo138668;Parent=Physo138668;rank=3 scaffold_65 . exon 358822 359900 . - . ID=Physo138668.3;Parent=Physo138668;constitutive=1;ensembl_phase=1;rank=3 scaffold_65 . CDS 359926 360180 . - 0 ID=Physo138668;Parent=Physo138668;rank=2 scaffold_65 . exon 359926 360180 . - . ID=Physo138668.2;Parent=Physo138668;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 360245 360587 . - 0 ID=Physo138668;Parent=Physo138668;rank=1 scaffold_65 . exon 360245 360587 . - . ID=Physo138668.1;Parent=Physo138668;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . biological_region 367730 367732 0.999 - . logic_name=eponine scaffold_65 ensembl protein_coding_gene 365987 367576 . - . ID=Physo138669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650088;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 365987 367576 . - . ID=Physo138669;Parent=Physo138669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 365987 367576 . - 0 ID=Physo138669;Parent=Physo138669;rank=1 scaffold_65 . exon 365987 367576 . - . ID=Physo138669.1;Parent=Physo138669;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 369489 371096 . + . ID=Physo138670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650089;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 369489 371096 . + . ID=Physo138670;Parent=Physo138670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 369489 371096 . + 0 ID=Physo138670;Parent=Physo138670;rank=1 scaffold_65 . exon 369489 371096 . + . ID=Physo138670.1;Parent=Physo138670;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 371385 372922 . + . ID=Physo138671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650090;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 371385 372922 . + . ID=Physo138671;Parent=Physo138671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 371385 371959 . + 0 ID=Physo138671;Parent=Physo138671;rank=1 scaffold_65 . exon 371385 371959 . + . ID=Physo138671.1;Parent=Physo138671;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 372211 372922 . + 0 ID=Physo138671;Parent=Physo138671;rank=2 scaffold_65 . exon 372211 372922 . + . ID=Physo138671.2;Parent=Physo138671;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 ensembl protein_coding_gene 373151 373849 . - . ID=Physo138672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650091;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 373151 373849 . - . ID=Physo138672;Parent=Physo138672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 373151 373849 . - 0 ID=Physo138672;Parent=Physo138672;rank=1 scaffold_65 . exon 373151 373849 . - . ID=Physo138672.1;Parent=Physo138672;constitutive=1;rank=1 scaffold_65 . repeat_region 376529 376539 . ? . description=dust scaffold_65 . repeat_region 377839 377898 . ? . description=dust scaffold_65 . repeat_region 379086 379093 . ? . description=dust scaffold_65 . repeat_region 381688 381742 . ? . description=trf scaffold_65 . repeat_region 381877 381931 . ? . description=trf scaffold_65 . repeat_region 382153 382160 . ? . description=dust scaffold_65 ensembl protein_coding_gene 379319 381150 . - . ID=Physo138673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650092;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 379319 381150 . - . ID=Physo138673;Parent=Physo138673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 379319 380160 . - 0 ID=Physo138673;Parent=Physo138673;rank=5 scaffold_65 . exon 379319 380160 . - . ID=Physo138673.5;Parent=Physo138673;constitutive=1;ensembl_phase=1;rank=5 scaffold_65 . CDS 380245 380538 . - 0 ID=Physo138673;Parent=Physo138673;rank=4 scaffold_65 . exon 380245 380538 . - . ID=Physo138673.4;Parent=Physo138673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_65 . CDS 380600 380674 . - 0 ID=Physo138673;Parent=Physo138673;rank=3 scaffold_65 . exon 380600 380674 . - . ID=Physo138673.3;Parent=Physo138673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_65 . CDS 380737 380832 . - 0 ID=Physo138673;Parent=Physo138673;rank=2 scaffold_65 . exon 380737 380832 . - . ID=Physo138673.2;Parent=Physo138673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_65 . CDS 380893 381079 . - 0 ID=Physo138673;Parent=Physo138673;rank=1 scaffold_65 . exon 380893 381150 . - . ID=Physo138673.1;Parent=Physo138673;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_65 ensembl protein_coding_gene 384613 385164 . + . ID=Physo138674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650093;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 384613 385164 . + . ID=Physo138674;Parent=Physo138674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 384613 385164 . + 0 ID=Physo138674;Parent=Physo138674;rank=1 scaffold_65 . exon 384613 385164 . + . ID=Physo138674.1;Parent=Physo138674;constitutive=1;rank=1 scaffold_65 . biological_region 392691 392691 0.999 + . logic_name=eponine scaffold_65 ensembl pseudogene 393443 394990 . - . ID=Physo138675;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_650094;logic_name=jgi_physo1_1 scaffold_65 ensembl pseudogene 393443 394990 . - . ID=Physo138675;Parent=Physo138675;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_65 . exon 393443 394990 . - . ID=Physo138675.1;Parent=Physo138675;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_65 . repeat_region 400369 400377 . ? . description=dust scaffold_65 . repeat_region 402193 402231 . ? . description=trf scaffold_65 . repeat_region 402366 402397 . ? . description=dust scaffold_65 . repeat_region 403283 403292 . ? . description=dust scaffold_65 ensembl protein_coding_gene 396352 397969 . - . ID=Physo138676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650095;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 396352 397969 . - . ID=Physo138676;Parent=Physo138676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 396352 397956 . - 0 ID=Physo138676;Parent=Physo138676;rank=1 scaffold_65 . exon 396352 397969 . - . ID=Physo138676.1;Parent=Physo138676;constitutive=1;ensembl_phase=-1;rank=1 scaffold_65 ensembl protein_coding_gene 400557 402416 . - . ID=Physo138677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650096;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 400557 402416 . - . ID=Physo138677;Parent=Physo138677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 400557 402416 . - 0 ID=Physo138677;Parent=Physo138677;rank=1 scaffold_65 . exon 400557 402416 . - . ID=Physo138677.1;Parent=Physo138677;constitutive=1;rank=1 scaffold_65 . biological_region 405384 405389 0.999 + . logic_name=eponine scaffold_65 . biological_region 405398 405398 0.999 + . logic_name=eponine scaffold_65 . biological_region 407528 407529 0.999 - . logic_name=eponine scaffold_65 . biological_region 407836 407839 0.999 + . logic_name=eponine scaffold_65 . biological_region 407894 407898 0.999 + . logic_name=eponine scaffold_65 . biological_region 407942 407942 0.999 - . logic_name=eponine scaffold_65 . biological_region 407952 407954 0.999 - . logic_name=eponine scaffold_65 . biological_region 407982 407990 0.999 - . logic_name=eponine scaffold_65 . biological_region 408350 408354 0.999 + . logic_name=eponine scaffold_65 . biological_region 408590 408592 0.999 + . logic_name=eponine scaffold_65 ensembl protein_coding_gene 405031 406140 . + . ID=Physo138678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650097;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 405031 406140 . + . ID=Physo138678;Parent=Physo138678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 405031 406140 . + 0 ID=Physo138678;Parent=Physo138678;rank=1 scaffold_65 . exon 405031 406140 . + . ID=Physo138678.1;Parent=Physo138678;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 406324 407994 . - . ID=Physo138679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650098;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 406324 407994 . - . ID=Physo138679;Parent=Physo138679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 406324 407994 . - 0 ID=Physo138679;Parent=Physo138679;rank=1 scaffold_65 . exon 406324 407994 . - . ID=Physo138679.1;Parent=Physo138679;constitutive=1;rank=1 scaffold_65 ensembl protein_coding_gene 408265 408941 . + . ID=Physo138680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650099;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 408265 408941 . + . ID=Physo138680;Parent=Physo138680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 408265 408422 . + 0 ID=Physo138680;Parent=Physo138680;rank=1 scaffold_65 . exon 408265 408422 . + . ID=Physo138680.1;Parent=Physo138680;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_65 . CDS 408506 408941 . + 0 ID=Physo138680;Parent=Physo138680;rank=2 scaffold_65 . exon 408506 408941 . + . ID=Physo138680.2;Parent=Physo138680;constitutive=1;ensembl_phase=2;rank=2 scaffold_65 ensembl protein_coding_gene 409878 410842 . + . ID=Physo138681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_650100;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 409878 410842 . + . ID=Physo138681;Parent=Physo138681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 409878 410721 . + 0 ID=Physo138681;Parent=Physo138681;rank=1 scaffold_65 . exon 409878 410721 . + . ID=Physo138681.1;Parent=Physo138681;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_65 . CDS 410763 410842 . + 0 ID=Physo138681;Parent=Physo138681;rank=2 scaffold_65 . exon 410763 410842 . + . ID=Physo138681.2;Parent=Physo138681;constitutive=1;ensembl_phase=1;rank=2 scaffold_65 ensembl protein_coding_gene 409132 409797 . - . ID=Physo157870;biotype=protein_coding;external_name=C_scaffold_65000017;logic_name=jgi_physo1_1 scaffold_65 ensembl transcript 409132 409797 . - . ID=Physo157870;Parent=Physo157870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_65 . CDS 409132 409290 . - 0 ID=Physo157870;Parent=Physo157870;rank=4 scaffold_65 . exon 409132 409290 . - . ID=Physo157870.4;Parent=Physo157870;constitutive=1;rank=4 scaffold_65 . CDS 409361 409459 . - 0 ID=Physo157870;Parent=Physo157870;rank=3 scaffold_65 . exon 409361 409459 . - . ID=Physo157870.3;Parent=Physo157870;constitutive=1;rank=3 scaffold_65 . CDS 409519 409617 . - 0 ID=Physo157870;Parent=Physo157870;rank=2 scaffold_65 . exon 409519 409617 . - . ID=Physo157870.2;Parent=Physo157870;constitutive=1;rank=2 scaffold_65 . CDS 409672 409797 . - 0 ID=Physo157870;Parent=Physo157870;rank=1 scaffold_65 . exon 409672 409797 . - . ID=Physo157870.1;Parent=Physo157870;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_62 1 429262 scaffold_62 . biological_region 592 594 0.999 + . logic_name=eponine scaffold_62 . biological_region 623 626 0.999 - . logic_name=eponine scaffold_62 . biological_region 661 666 0.999 + . logic_name=eponine scaffold_62 . biological_region 680 681 0.999 + . logic_name=eponine scaffold_62 . biological_region 904 907 0.999 - . logic_name=eponine scaffold_62 . biological_region 1529 1532 0.999 - . logic_name=eponine scaffold_62 . repeat_region 8751 8804 . ? . description=trf scaffold_62 . repeat_region 8752 8797 . ? . description=trf scaffold_62 . repeat_region 8752 8803 . ? . description=dust scaffold_62 . biological_region 9617 9625 0.999 + . logic_name=eponine scaffold_62 . biological_region 9785 9787 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 159 1662 . - . ID=Physo138265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620001;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 159 1662 . - . ID=Physo138265;Parent=Physo138265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 159 1662 . - . ID=Physo138265.1;Parent=Physo138265;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 367 1605 . - 0 ID=Physo138265;Parent=Physo138265;rank=1 scaffold_62 ensembl protein_coding_gene 3809 4433 . + . ID=Physo138266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620002;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 3809 4433 . + . ID=Physo138266;Parent=Physo138266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 3809 4341 . + 0 ID=Physo138266;Parent=Physo138266;rank=1 scaffold_62 . exon 3809 4341 . + . ID=Physo138266.1;Parent=Physo138266;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 4385 4433 . + 0 ID=Physo138266;Parent=Physo138266;rank=2 scaffold_62 . exon 4385 4433 . + . ID=Physo138266.2;Parent=Physo138266;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 ensembl protein_coding_gene 5952 14474 . - . ID=Physo138267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620003;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 5952 14474 . - . ID=Physo138267;Parent=Physo138267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 5952 7199 . - 0 ID=Physo138267;Parent=Physo138267;rank=8 scaffold_62 . exon 5952 7199 . - . ID=Physo138267.8;Parent=Physo138267;constitutive=1;rank=8 scaffold_62 . CDS 7485 8000 . - 0 ID=Physo138267;Parent=Physo138267;rank=7 scaffold_62 . exon 7485 8000 . - . ID=Physo138267.7;Parent=Physo138267;constitutive=1;rank=7 scaffold_62 . CDS 8077 8227 . - 0 ID=Physo138267;Parent=Physo138267;rank=6 scaffold_62 . exon 8077 8227 . - . ID=Physo138267.6;Parent=Physo138267;constitutive=1;ensembl_phase=2;rank=6 scaffold_62 . CDS 8301 8332 . - 0 ID=Physo138267;Parent=Physo138267;rank=5 scaffold_62 . exon 8301 8332 . - . ID=Physo138267.5;Parent=Physo138267;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_62 . CDS 8412 8923 . - 0 ID=Physo138267;Parent=Physo138267;rank=4 scaffold_62 . exon 8412 8923 . - . ID=Physo138267.4;Parent=Physo138267;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . CDS 9156 12919 . - 0 ID=Physo138267;Parent=Physo138267;rank=3 scaffold_62 . exon 9156 12919 . - . ID=Physo138267.3;Parent=Physo138267;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 12992 13957 . - 0 ID=Physo138267;Parent=Physo138267;rank=2 scaffold_62 . CDS 14443 14474 . - 0 ID=Physo138267;Parent=Physo138267;rank=1 scaffold_62 ensembl protein_coding_gene 18830 20905 . + . ID=Physo109124;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_620001;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 18830 20905 . + . ID=Physo109124;Parent=Physo109124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 18830 19077 . + . ID=Physo109124.1;Parent=Physo109124;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 18850 19077 . + 0 ID=Physo109124;Parent=Physo109124;rank=1 scaffold_62 . CDS 19340 20842 . + 0 ID=Physo109124;Parent=Physo109124;rank=2 scaffold_62 . exon 19340 20905 . + . ID=Physo109124.2;Parent=Physo109124;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_62 . exon 12992 13957 . - . ID=Physo138267.2;Parent=Physo138267;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_62 . exon 14443 14474 . - . ID=Physo138267.1;Parent=Physo138267;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 16061 17089 . - . ID=Physo138268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620004;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 16061 17089 . - . ID=Physo138268;Parent=Physo138268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 16061 17089 . - 0 ID=Physo138268;Parent=Physo138268;rank=1 scaffold_62 . exon 16061 17089 . - . ID=Physo138268.1;Parent=Physo138268;constitutive=1;rank=1 scaffold_62 . biological_region 20553 20556 0.999 + . logic_name=eponine scaffold_62 . biological_region 20643 20646 0.999 - . logic_name=eponine scaffold_62 . biological_region 20698 20701 0.999 + . logic_name=eponine scaffold_62 . biological_region 22405 22406 0.999 - . logic_name=eponine scaffold_62 . biological_region 22418 22423 0.999 - . logic_name=eponine scaffold_62 . biological_region 22446 22448 0.999 - . logic_name=eponine scaffold_62 . biological_region 22491 22495 0.999 - . logic_name=eponine scaffold_62 . repeat_region 26218 26225 . ? . description=dust scaffold_62 . repeat_region 28853 28860 . ? . description=dust scaffold_62 . repeat_region 29166 29195 . ? . description=trf scaffold_62 ensembl protein_coding_gene 21438 22718 . + . ID=Physo109125;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_620002;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 21438 22718 . + . ID=Physo109125;Parent=Physo109125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 21438 21587 . + . ID=Physo109125.1;Parent=Physo109125;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 21480 21587 . + 0 ID=Physo109125;Parent=Physo109125;rank=1 scaffold_62 . CDS 21648 22718 . + 0 ID=Physo109125;Parent=Physo109125;rank=2 scaffold_62 . exon 21648 22718 . + . ID=Physo109125.2;Parent=Physo109125;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 25771 26207 . + . ID=Physo138273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620009;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 25771 26207 . + . ID=Physo138273;Parent=Physo138273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 25771 25912 . + 0 ID=Physo138273;Parent=Physo138273;rank=1 scaffold_62 . exon 25771 25912 . + . ID=Physo138273.1;Parent=Physo138273;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 25993 26207 . + 0 ID=Physo138273;Parent=Physo138273;rank=2 scaffold_62 . exon 25993 26207 . + . ID=Physo138273.2;Parent=Physo138273;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 ensembl protein_coding_gene 26646 27144 . - . ID=Physo138274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620010;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 26646 27144 . - . ID=Physo138274;Parent=Physo138274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 26646 26715 . - 0 ID=Physo138274;Parent=Physo138274;rank=2 scaffold_62 . exon 26646 26715 . - . ID=Physo138274.2;Parent=Physo138274;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 26801 27144 . - 0 ID=Physo138274;Parent=Physo138274;rank=1 scaffold_62 . exon 26801 27144 . - . ID=Physo138274.1;Parent=Physo138274;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 23505 24907 . - . ID=Physo157798;biotype=protein_coding;external_name=C_scaffold_62000006;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 23505 24907 . - . ID=Physo157798;Parent=Physo157798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 23505 23571 . - 0 ID=Physo157798;Parent=Physo157798;rank=5 scaffold_62 . exon 23505 23571 . - . ID=Physo157798.5;Parent=Physo157798;constitutive=1;ensembl_phase=2;rank=5 scaffold_62 . CDS 23628 23725 . - 0 ID=Physo157798;Parent=Physo157798;rank=4 scaffold_62 . exon 23628 23725 . - . ID=Physo157798.4;Parent=Physo157798;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_62 . CDS 24080 24156 . - 0 ID=Physo157798;Parent=Physo157798;rank=3 scaffold_62 . exon 24080 24156 . - . ID=Physo157798.3;Parent=Physo157798;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 24223 24724 . - 0 ID=Physo157798;Parent=Physo157798;rank=2 scaffold_62 . exon 24223 24724 . - . ID=Physo157798.2;Parent=Physo157798;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_62 . CDS 24752 24907 . - 0 ID=Physo157798;Parent=Physo157798;rank=1 scaffold_62 . exon 24752 24907 . - . ID=Physo157798.1;Parent=Physo157798;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 36084 38834 . - . ID=Physo138275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620011;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 36084 38834 . - . ID=Physo138275;Parent=Physo138275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 36084 38834 . - 0 ID=Physo138275;Parent=Physo138275;rank=1 scaffold_62 . exon 36084 38834 . - . ID=Physo138275.1;Parent=Physo138275;constitutive=1;rank=1 scaffold_62 . repeat_region 41929 41937 . ? . description=dust scaffold_62 . repeat_region 43246 43436 . + . description=Polinton-1_PI scaffold_62 . biological_region 46333 46339 0.999 - . logic_name=eponine scaffold_62 . biological_region 46389 46394 0.999 + . logic_name=eponine scaffold_62 . repeat_region 47010 47057 . ? . description=dust scaffold_62 . biological_region 47122 47122 0.999 + . logic_name=eponine scaffold_62 . biological_region 47377 47379 0.999 - . logic_name=eponine scaffold_62 . biological_region 48038 48042 0.999 - . logic_name=eponine scaffold_62 . biological_region 49045 49051 0.999 + . logic_name=eponine scaffold_62 . biological_region 49436 49440 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 47487 48461 . + . ID=Physo109126;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_620003;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 47487 48461 . + . ID=Physo109126;Parent=Physo109126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 47487 48461 . + . ID=Physo109126.1;Parent=Physo109126;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 47521 48276 . + 0 ID=Physo109126;Parent=Physo109126;rank=1 scaffold_62 ensembl protein_coding_gene 45871 47097 . - . ID=Physo138276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620012;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 45871 47097 . - . ID=Physo138276;Parent=Physo138276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 45871 47097 . - 0 ID=Physo138276;Parent=Physo138276;rank=1 scaffold_62 . exon 45871 47097 . - . ID=Physo138276.1;Parent=Physo138276;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 48958 50961 . + . ID=Physo138278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620014;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 48958 50961 . + . ID=Physo138278;Parent=Physo138278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 48958 50961 . + 0 ID=Physo138278;Parent=Physo138278;rank=1 scaffold_62 . exon 48958 50961 . + . ID=Physo138278.1;Parent=Physo138278;constitutive=1;rank=1 scaffold_62 . repeat_region 59301 59326 . ? . description=trf scaffold_62 ensembl protein_coding_gene 51446 54285 . - . ID=Physo138279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620015;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 51446 54285 . - . ID=Physo138279;Parent=Physo138279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 51446 51853 . - 0 ID=Physo138279;Parent=Physo138279;rank=5 scaffold_62 . exon 51446 51853 . - . ID=Physo138279.5;Parent=Physo138279;constitutive=1;rank=5 scaffold_62 . CDS 51926 52225 . - 0 ID=Physo138279;Parent=Physo138279;rank=4 scaffold_62 . exon 51926 52225 . - . ID=Physo138279.4;Parent=Physo138279;constitutive=1;rank=4 scaffold_62 . CDS 52317 52783 . - 0 ID=Physo138279;Parent=Physo138279;rank=3 scaffold_62 . exon 52317 52783 . - . ID=Physo138279.3;Parent=Physo138279;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 53188 54137 . - 0 ID=Physo138279;Parent=Physo138279;rank=2 scaffold_62 . exon 53188 54137 . - . ID=Physo138279.2;Parent=Physo138279;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 54203 54285 . - 0 ID=Physo138279;Parent=Physo138279;rank=1 scaffold_62 . exon 54203 54285 . - . ID=Physo138279.1;Parent=Physo138279;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 54496 56534 . + . ID=Physo138280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620016;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 54496 56534 . + . ID=Physo138280;Parent=Physo138280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 54496 54607 . + 0 ID=Physo138280;Parent=Physo138280;rank=1 scaffold_62 . exon 54496 54607 . + . ID=Physo138280.1;Parent=Physo138280;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 54752 56240 . + 0 ID=Physo138280;Parent=Physo138280;rank=2 scaffold_62 . exon 54752 56240 . + . ID=Physo138280.2;Parent=Physo138280;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_62 . CDS 56294 56534 . + 0 ID=Physo138280;Parent=Physo138280;rank=3 scaffold_62 . exon 56294 56534 . + . ID=Physo138280.3;Parent=Physo138280;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 ensembl protein_coding_gene 56762 57704 . - . ID=Physo138281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620017;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 56762 57704 . - . ID=Physo138281;Parent=Physo138281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 56762 57163 . - 0 ID=Physo138281;Parent=Physo138281;rank=3 scaffold_62 . exon 56762 57163 . - . ID=Physo138281.3;Parent=Physo138281;constitutive=1;rank=3 scaffold_62 . CDS 57272 57489 . - 0 ID=Physo138281;Parent=Physo138281;rank=2 scaffold_62 . exon 57272 57489 . - . ID=Physo138281.2;Parent=Physo138281;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 57566 57704 . - 0 ID=Physo138281;Parent=Physo138281;rank=1 scaffold_62 . exon 57566 57704 . - . ID=Physo138281.1;Parent=Physo138281;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 59334 60196 . - . ID=Physo138282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620018;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 59334 60196 . - . ID=Physo138282;Parent=Physo138282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 59334 60196 . - . ID=Physo138282.1;Parent=Physo138282;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_62 . CDS 59498 60196 . - 0 ID=Physo138282;Parent=Physo138282;rank=1 scaffold_62 . biological_region 60019 60031 0.999 + . logic_name=eponine scaffold_62 . biological_region 60036 60040 0.999 - . logic_name=eponine scaffold_62 . biological_region 60075 60077 0.999 + . logic_name=eponine scaffold_62 . biological_region 60123 60126 0.999 - . logic_name=eponine scaffold_62 . biological_region 60560 60564 0.999 - . logic_name=eponine scaffold_62 . biological_region 60586 60589 0.999 + . logic_name=eponine scaffold_62 . biological_region 60664 60665 0.999 - . logic_name=eponine scaffold_62 . biological_region 61326 61329 0.999 + . logic_name=eponine scaffold_62 . biological_region 63447 63449 0.999 - . logic_name=eponine scaffold_62 . repeat_region 67418 67473 . ? . description=dust scaffold_62 . biological_region 68140 68140 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 62274 62987 . - . ID=Physo138283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620019;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 62274 62987 . - . ID=Physo138283;Parent=Physo138283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 62274 62987 . - 0 ID=Physo138283;Parent=Physo138283;rank=1 scaffold_62 . exon 62274 62987 . - . ID=Physo138283.1;Parent=Physo138283;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 65475 66361 . + . ID=Physo138284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620020;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 65475 66361 . + . ID=Physo138284;Parent=Physo138284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 65475 65845 . + 0 ID=Physo138284;Parent=Physo138284;rank=1 scaffold_62 . exon 65475 65845 . + . ID=Physo138284.1;Parent=Physo138284;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 65929 66361 . + 0 ID=Physo138284;Parent=Physo138284;rank=2 scaffold_62 . exon 65929 66361 . + . ID=Physo138284.2;Parent=Physo138284;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 ensembl protein_coding_gene 67225 70386 . + . ID=Physo138285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620021;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 67225 70386 . + . ID=Physo138285;Parent=Physo138285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 67225 70386 . + 0 ID=Physo138285;Parent=Physo138285;rank=1 scaffold_62 . exon 67225 70386 . + . ID=Physo138285.1;Parent=Physo138285;constitutive=1;rank=1 scaffold_62 . repeat_region 70838 70870 . ? . description=trf scaffold_62 ensembl protein_coding_gene 71005 72936 . + . ID=Physo138286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620022;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 71005 72936 . + . ID=Physo138286;Parent=Physo138286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 71005 72936 . + 0 ID=Physo138286;Parent=Physo138286;rank=1 scaffold_62 . exon 71005 72936 . + . ID=Physo138286.1;Parent=Physo138286;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 73775 74983 . - . ID=Physo138287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620023;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 73775 74983 . - . ID=Physo138287;Parent=Physo138287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 73775 74041 . - 0 ID=Physo138287;Parent=Physo138287;rank=3 scaffold_62 . exon 73775 74041 . - . ID=Physo138287.3;Parent=Physo138287;constitutive=1;rank=3 scaffold_62 . CDS 74108 74185 . - 0 ID=Physo138287;Parent=Physo138287;rank=2 scaffold_62 . exon 74108 74185 . - . ID=Physo138287.2;Parent=Physo138287;constitutive=1;rank=2 scaffold_62 . CDS 74261 74983 . - 0 ID=Physo138287;Parent=Physo138287;rank=1 scaffold_62 . exon 74261 74983 . - . ID=Physo138287.1;Parent=Physo138287;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 75177 77067 . + . ID=Physo138288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620024;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 75177 77067 . + . ID=Physo138288;Parent=Physo138288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 75177 76573 . + 0 ID=Physo138288;Parent=Physo138288;rank=1 scaffold_62 . exon 75177 76573 . + . ID=Physo138288.1;Parent=Physo138288;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 76644 77067 . + 0 ID=Physo138288;Parent=Physo138288;rank=2 scaffold_62 . exon 76644 77067 . + . ID=Physo138288.2;Parent=Physo138288;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 ensembl protein_coding_gene 77147 79820 . - . ID=Physo138289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620025;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 77147 79820 . - . ID=Physo138289;Parent=Physo138289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 77147 79633 . - 0 ID=Physo138289;Parent=Physo138289;rank=2 scaffold_62 . exon 77147 79633 . - . ID=Physo138289.2;Parent=Physo138289;constitutive=1;rank=2 scaffold_62 . CDS 79776 79820 . - 0 ID=Physo138289;Parent=Physo138289;rank=1 scaffold_62 . exon 79776 79820 . - . ID=Physo138289.1;Parent=Physo138289;constitutive=1;rank=1 scaffold_62 . biological_region 80082 80083 0.999 + . logic_name=eponine scaffold_62 . biological_region 80113 80115 0.999 - . logic_name=eponine scaffold_62 . biological_region 80148 80150 0.999 - . logic_name=eponine scaffold_62 . biological_region 80148 80155 0.999 + . logic_name=eponine scaffold_62 . biological_region 80198 80201 0.999 - . logic_name=eponine scaffold_62 . biological_region 80221 80226 0.999 + . logic_name=eponine scaffold_62 . biological_region 80252 80256 0.999 + . logic_name=eponine scaffold_62 . biological_region 80438 80442 0.999 - . logic_name=eponine scaffold_62 . biological_region 80477 80478 0.999 - . logic_name=eponine scaffold_62 . biological_region 80494 80496 0.999 + . logic_name=eponine scaffold_62 . biological_region 80514 80521 0.999 + . logic_name=eponine scaffold_62 . biological_region 80547 80551 0.999 + . logic_name=eponine scaffold_62 . biological_region 80578 80579 0.999 - . logic_name=eponine scaffold_62 . biological_region 80601 80603 0.999 + . logic_name=eponine scaffold_62 . biological_region 80611 80614 0.999 + . logic_name=eponine scaffold_62 . biological_region 80619 80622 0.999 - . logic_name=eponine scaffold_62 . biological_region 80625 80631 0.999 - . logic_name=eponine scaffold_62 . biological_region 80646 80658 0.999 - . logic_name=eponine scaffold_62 . biological_region 80649 80656 0.999 + . logic_name=eponine scaffold_62 . biological_region 80703 80706 0.999 + . logic_name=eponine scaffold_62 . biological_region 80926 80931 0.999 + . logic_name=eponine scaffold_62 . biological_region 81942 81947 0.999 - . logic_name=eponine scaffold_62 . biological_region 82167 82170 0.999 - . logic_name=eponine scaffold_62 . biological_region 82215 82227 0.999 + . logic_name=eponine scaffold_62 . biological_region 82217 82224 0.999 - . logic_name=eponine scaffold_62 . biological_region 82242 82248 0.999 + . logic_name=eponine scaffold_62 . biological_region 82251 82254 0.999 + . logic_name=eponine scaffold_62 . biological_region 82259 82262 0.999 - . logic_name=eponine scaffold_62 . biological_region 82270 82272 0.999 - . logic_name=eponine scaffold_62 . biological_region 82294 82295 0.999 + . logic_name=eponine scaffold_62 . biological_region 82322 82326 0.999 - . logic_name=eponine scaffold_62 . biological_region 82352 82359 0.999 - . logic_name=eponine scaffold_62 . biological_region 82377 82379 0.999 - . logic_name=eponine scaffold_62 . biological_region 82395 82396 0.999 + . logic_name=eponine scaffold_62 . biological_region 82431 82435 0.999 + . logic_name=eponine scaffold_62 . biological_region 82617 82621 0.999 - . logic_name=eponine scaffold_62 . biological_region 82647 82652 0.999 - . logic_name=eponine scaffold_62 . biological_region 82672 82675 0.999 + . logic_name=eponine scaffold_62 . biological_region 82718 82725 0.999 - . logic_name=eponine scaffold_62 . biological_region 82723 82725 0.999 + . logic_name=eponine scaffold_62 . biological_region 82758 82760 0.999 + . logic_name=eponine scaffold_62 . biological_region 82790 82791 0.999 - . logic_name=eponine scaffold_62 . biological_region 84228 84229 0.999 + . logic_name=eponine scaffold_62 . biological_region 86293 86295 0.999 + . logic_name=eponine scaffold_62 . repeat_region 88247 88257 . ? . description=dust scaffold_62 . repeat_region 88279 88287 . ? . description=dust scaffold_62 ensembl protein_coding_gene 79949 81347 . - . ID=Physo109127;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_620004;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 79949 81347 . - . ID=Physo109127;Parent=Physo109127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 79949 81289 . - 0 ID=Physo109127;Parent=Physo109127;rank=1 scaffold_62 . exon 79949 81347 . - . ID=Physo109127.1;Parent=Physo109127;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 ensembl protein_coding_gene 82072 82902 . + . ID=Physo119389;biotype=protein_coding;external_name=estExt_Genewise1.C_620050;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 82072 82902 . + . ID=Physo119389;Parent=Physo119389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 82072 82130 . + 0 ID=Physo119389;Parent=Physo119389;rank=1 scaffold_62 . exon 82072 82130 . + . ID=Physo119389.1;Parent=Physo119389;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 82170 82316 . + 0 ID=Physo119389;Parent=Physo119389;rank=2 scaffold_62 . exon 82170 82316 . + . ID=Physo119389.2;Parent=Physo119389;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_62 . CDS 82677 82902 . + 0 ID=Physo119389;Parent=Physo119389;rank=3 scaffold_62 . exon 82677 82902 . + . ID=Physo119389.3;Parent=Physo119389;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 ensembl protein_coding_gene 86165 86428 . + . ID=Physo119392;biotype=protein_coding;external_name=estExt_Genewise1.C_620053;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 86165 86428 . + . ID=Physo119392;Parent=Physo119392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 86165 86428 . + . ID=Physo119392.1;Parent=Physo119392;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 86222 86428 . + 0 ID=Physo119392;Parent=Physo119392;rank=1 scaffold_62 ensembl protein_coding_gene 83409 84897 . + . ID=Physo138292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620028;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 83409 84897 . + . ID=Physo138292;Parent=Physo138292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 83409 84897 . + . ID=Physo138292.1;Parent=Physo138292;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 83441 84862 . + 0 ID=Physo138292;Parent=Physo138292;rank=1 scaffold_62 ensembl protein_coding_gene 88440 90101 . - . ID=Physo138293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620029;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 88440 90101 . - . ID=Physo138293;Parent=Physo138293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 88440 88819 . - . ID=Physo138293.2;Parent=Physo138293;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_62 . CDS 88651 88819 . - 0 ID=Physo138293;Parent=Physo138293;rank=2 scaffold_62 . CDS 88930 90101 . - 0 ID=Physo138293;Parent=Physo138293;rank=1 scaffold_62 . exon 88930 90101 . - . ID=Physo138293.1;Parent=Physo138293;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . repeat_region 94649 94705 . ? . description=trf scaffold_62 . repeat_region 94729 94753 . ? . description=trf scaffold_62 . repeat_region 94794 94964 . ? . description=trf scaffold_62 . repeat_region 96659 96853 . ? . description=trf scaffold_62 . repeat_region 97129 97205 . ? . description=trf scaffold_62 . repeat_region 98848 99143 . ? . description=trf scaffold_62 ensembl protein_coding_gene 90681 92362 . - . ID=Physo138294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620030;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 90681 92362 . - . ID=Physo138294;Parent=Physo138294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 90681 91508 . - 0 ID=Physo138294;Parent=Physo138294;rank=3 scaffold_62 . exon 90681 91508 . - . ID=Physo138294.3;Parent=Physo138294;constitutive=1;rank=3 scaffold_62 . CDS 91570 91751 . - 0 ID=Physo138294;Parent=Physo138294;rank=2 scaffold_62 . exon 91570 91751 . - . ID=Physo138294.2;Parent=Physo138294;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 91822 92362 . - 0 ID=Physo138294;Parent=Physo138294;rank=1 scaffold_62 . exon 91822 92362 . - . ID=Physo138294.1;Parent=Physo138294;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 93930 95139 . + . ID=Physo138295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620031;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 93930 95139 . + . ID=Physo138295;Parent=Physo138295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 93930 95139 . + . ID=Physo138295.1;Parent=Physo138295;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 94111 95139 . + 0 ID=Physo138295;Parent=Physo138295;rank=1 scaffold_62 ensembl protein_coding_gene 97110 98638 . - . ID=Physo138296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620032;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 97110 98638 . - . ID=Physo138296;Parent=Physo138296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 97110 97174 . - 0 ID=Physo138296;Parent=Physo138296;rank=2 scaffold_62 . exon 97110 97174 . - . ID=Physo138296.2;Parent=Physo138296;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 97483 98638 . - 0 ID=Physo138296;Parent=Physo138296;rank=1 scaffold_62 . exon 97483 98638 . - . ID=Physo138296.1;Parent=Physo138296;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 99358 100792 . - . ID=Physo138297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620033;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 99358 100792 . - . ID=Physo138297;Parent=Physo138297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 99358 99705 . - . ID=Physo138297.4;Parent=Physo138297;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_62 . CDS 99363 99705 . - 0 ID=Physo138297;Parent=Physo138297;rank=4 scaffold_62 . CDS 100108 100115 . - 0 ID=Physo138297;Parent=Physo138297;rank=3 scaffold_62 . CDS 100267 100290 . - 0 ID=Physo138297;Parent=Physo138297;rank=2 scaffold_62 . CDS 100461 100733 . - 0 ID=Physo138297;Parent=Physo138297;rank=1 scaffold_62 . biological_region 100982 100983 0.999 + . logic_name=eponine scaffold_62 . repeat_region 103197 103204 . ? . description=dust scaffold_62 . biological_region 104812 104812 0.999 - . logic_name=eponine scaffold_62 . biological_region 106290 106291 0.999 - . logic_name=eponine scaffold_62 . biological_region 107829 107832 0.999 - . logic_name=eponine scaffold_62 . exon 100108 100115 . - . ID=Physo138297.3;Parent=Physo138297;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . exon 100267 100290 . - . ID=Physo138297.2;Parent=Physo138297;constitutive=1;rank=2 scaffold_62 . exon 100461 100792 . - . ID=Physo138297.1;Parent=Physo138297;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 ensembl protein_coding_gene 106480 107914 . + . ID=Physo138298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620034;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 106480 107914 . + . ID=Physo138298;Parent=Physo138298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 106480 106811 . + . ID=Physo138298.1;Parent=Physo138298;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 106539 106811 . + 0 ID=Physo138298;Parent=Physo138298;rank=1 scaffold_62 . CDS 106982 107005 . + 0 ID=Physo138298;Parent=Physo138298;rank=2 scaffold_62 . exon 106982 107005 . + . ID=Physo138298.2;Parent=Physo138298;constitutive=1;rank=2 scaffold_62 . CDS 107157 107164 . + 0 ID=Physo138298;Parent=Physo138298;rank=3 scaffold_62 . exon 107157 107164 . + . ID=Physo138298.3;Parent=Physo138298;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 107567 107909 . + 0 ID=Physo138298;Parent=Physo138298;rank=4 scaffold_62 . exon 107567 107914 . + . ID=Physo138298.4;Parent=Physo138298;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_62 ensembl protein_coding_gene 109327 109662 . - . ID=Physo138299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620035;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 109327 109662 . - . ID=Physo138299;Parent=Physo138299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 109327 109662 . - 0 ID=Physo138299;Parent=Physo138299;rank=1 scaffold_62 . exon 109327 109662 . - . ID=Physo138299.1;Parent=Physo138299;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 119320 120392 . + . ID=Physo119398;biotype=protein_coding;external_name=estExt_Genewise1.C_620059;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 119320 120392 . + . ID=Physo119398;Parent=Physo119398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 119320 120268 . + . ID=Physo119398.1;Parent=Physo119398;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 119365 120268 . + 0 ID=Physo119398;Parent=Physo119398;rank=1 scaffold_62 . CDS 120334 120392 . + 0 ID=Physo119398;Parent=Physo119398;rank=2 scaffold_62 ensembl protein_coding_gene 110476 117609 . + . ID=Physo138300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620036;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 110476 117609 . + . ID=Physo138300;Parent=Physo138300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 110476 110625 . + 0 ID=Physo138300;Parent=Physo138300;rank=1 scaffold_62 . exon 110476 110625 . + . ID=Physo138300.1;Parent=Physo138300;constitutive=1;rank=1 scaffold_62 . CDS 110698 117609 . + 0 ID=Physo138300;Parent=Physo138300;rank=2 scaffold_62 . exon 110698 117609 . + . ID=Physo138300.2;Parent=Physo138300;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 118044 118920 . - . ID=Physo138301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620037;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 118044 118920 . - . ID=Physo138301;Parent=Physo138301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 118044 118182 . - 0 ID=Physo138301;Parent=Physo138301;rank=3 scaffold_62 . exon 118044 118182 . - . ID=Physo138301.3;Parent=Physo138301;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 118271 118342 . - 0 ID=Physo138301;Parent=Physo138301;rank=2 scaffold_62 . exon 118271 118342 . - . ID=Physo138301.2;Parent=Physo138301;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_62 . CDS 118415 118920 . - 0 ID=Physo138301;Parent=Physo138301;rank=1 scaffold_62 . exon 118415 118920 . - . ID=Physo138301.1;Parent=Physo138301;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . biological_region 120583 120583 0.999 + . logic_name=eponine scaffold_62 . repeat_region 124738 124786 . ? . description=trf scaffold_62 . repeat_region 125316 125328 . ? . description=dust scaffold_62 . repeat_region 126717 126751 . ? . description=trf scaffold_62 . biological_region 127135 127138 0.999 + . logic_name=eponine scaffold_62 . biological_region 127162 127165 0.999 - . logic_name=eponine scaffold_62 . repeat_region 129577 129604 . ? . description=trf scaffold_62 . exon 120334 120392 . + . ID=Physo119398.2;Parent=Physo119398;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 ensembl protein_coding_gene 121046 123057 . - . ID=Physo138303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620039;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 121046 123057 . - . ID=Physo138303;Parent=Physo138303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 121046 123057 . - . ID=Physo138303.1;Parent=Physo138303;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_62 . CDS 121123 123057 . - 0 ID=Physo138303;Parent=Physo138303;rank=1 scaffold_62 ensembl protein_coding_gene 124058 124384 . - . ID=Physo138304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620040;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 124058 124384 . - . ID=Physo138304;Parent=Physo138304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 124058 124384 . - 0 ID=Physo138304;Parent=Physo138304;rank=1 scaffold_62 . exon 124058 124384 . - . ID=Physo138304.1;Parent=Physo138304;constitutive=1;rank=1 scaffold_62 ensembl tRNA_gene 138804 138875 . + . ID=EPrPSOG00000000171;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_62 ensembl transcript 138804 138875 . + . ID=EPrPSOT00000000171;Parent=EPrPSOG00000000171;biotype=tRNA;logic_name=ncrna_eg scaffold_62 . exon 138804 138875 . + . ID=EPrPSOE00000000171;Parent=EPrPSOT00000000171;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 130562 131474 . - . ID=Physo138305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620041;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 130562 131474 . - . ID=Physo138305;Parent=Physo138305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 130562 130603 . - 0 ID=Physo138305;Parent=Physo138305;rank=3 scaffold_62 . exon 130562 130603 . - . ID=Physo138305.3;Parent=Physo138305;constitutive=1;rank=3 scaffold_62 . CDS 130717 131329 . - 0 ID=Physo138305;Parent=Physo138305;rank=2 scaffold_62 . exon 130717 131329 . - . ID=Physo138305.2;Parent=Physo138305;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 131428 131474 . - 0 ID=Physo138305;Parent=Physo138305;rank=1 scaffold_62 . exon 131428 131474 . - . ID=Physo138305.1;Parent=Physo138305;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 139058 141103 . - . ID=Physo138306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620042;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 139058 141103 . - . ID=Physo138306;Parent=Physo138306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 139058 139675 . - 0 ID=Physo138306;Parent=Physo138306;rank=5 scaffold_62 . exon 139058 139675 . - . ID=Physo138306.5;Parent=Physo138306;constitutive=1;rank=5 scaffold_62 . CDS 139805 140004 . - 0 ID=Physo138306;Parent=Physo138306;rank=4 scaffold_62 . CDS 140097 140437 . - 0 ID=Physo138306;Parent=Physo138306;rank=3 scaffold_62 . CDS 140479 140588 . - 0 ID=Physo138306;Parent=Physo138306;rank=2 scaffold_62 . CDS 140999 141103 . - 0 ID=Physo138306;Parent=Physo138306;rank=1 scaffold_62 . repeat_region 141528 141559 . ? . description=trf scaffold_62 . repeat_region 141594 141820 . ? . description=trf scaffold_62 . repeat_region 141594 141868 . ? . description=trf scaffold_62 . repeat_region 141594 141868 . ? . description=trf scaffold_62 . repeat_region 141594 141868 . ? . description=trf scaffold_62 . repeat_region 141648 141803 . ? . description=dust scaffold_62 . biological_region 144837 144843 0.999 - . logic_name=eponine scaffold_62 . biological_region 144891 144893 0.999 - . logic_name=eponine scaffold_62 . biological_region 144893 144897 0.999 + . logic_name=eponine scaffold_62 . biological_region 144959 144964 0.999 - . logic_name=eponine scaffold_62 . biological_region 144967 144970 0.999 + . logic_name=eponine scaffold_62 . biological_region 145101 145103 0.999 - . logic_name=eponine scaffold_62 . biological_region 146069 146070 0.999 - . logic_name=eponine scaffold_62 . biological_region 149403 149405 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 146773 147470 . - . ID=Physo119410;biotype=protein_coding;external_name=estExt_Genewise1.C_620071;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 146773 147470 . - . ID=Physo119410;Parent=Physo119410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 146773 147159 . - 0 ID=Physo119410;Parent=Physo119410;rank=1 scaffold_62 . exon 146773 147470 . - . ID=Physo119410.1;Parent=Physo119410;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 . exon 139805 140004 . - . ID=Physo138306.4;Parent=Physo138306;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . exon 140097 140437 . - . ID=Physo138306.3;Parent=Physo138306;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_62 . exon 140479 140588 . - . ID=Physo138306.2;Parent=Physo138306;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_62 . exon 140999 141103 . - . ID=Physo138306.1;Parent=Physo138306;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 144665 146665 . + . ID=Physo138307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620043;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 144665 146665 . + . ID=Physo138307;Parent=Physo138307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 144665 146665 . + 0 ID=Physo138307;Parent=Physo138307;rank=1 scaffold_62 . exon 144665 146665 . + . ID=Physo138307.1;Parent=Physo138307;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 147969 150421 . - . ID=Physo138309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620045;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 147969 150421 . - . ID=Physo138309;Parent=Physo138309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 147969 148010 . - . ID=Physo138309.5;Parent=Physo138309;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_62 . CDS 147971 148010 . - 0 ID=Physo138309;Parent=Physo138309;rank=5 scaffold_62 . CDS 148083 148178 . - 0 ID=Physo138309;Parent=Physo138309;rank=4 scaffold_62 . exon 148083 148178 . - . ID=Physo138309.4;Parent=Physo138309;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_62 . CDS 148249 148559 . - 0 ID=Physo138309;Parent=Physo138309;rank=3 scaffold_62 . exon 148249 148559 . - . ID=Physo138309.3;Parent=Physo138309;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 148639 150248 . - 0 ID=Physo138309;Parent=Physo138309;rank=2 scaffold_62 . exon 148639 150248 . - . ID=Physo138309.2;Parent=Physo138309;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 150394 150421 . - 0 ID=Physo138309;Parent=Physo138309;rank=1 scaffold_62 . exon 150394 150421 . - . ID=Physo138309.1;Parent=Physo138309;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 150689 153289 . + . ID=Physo138310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620046;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 150689 153289 . + . ID=Physo138310;Parent=Physo138310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 150689 150887 . + 0 ID=Physo138310;Parent=Physo138310;rank=1 scaffold_62 . exon 150689 150887 . + . ID=Physo138310.1;Parent=Physo138310;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 150944 151995 . + 0 ID=Physo138310;Parent=Physo138310;rank=2 scaffold_62 . exon 150944 151995 . + . ID=Physo138310.2;Parent=Physo138310;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 152060 153289 . + 0 ID=Physo138310;Parent=Physo138310;rank=3 scaffold_62 . exon 152060 153289 . + . ID=Physo138310.3;Parent=Physo138310;constitutive=1;rank=3 scaffold_62 ensembl protein_coding_gene 153648 158013 . + . ID=Physo138311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620047;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 153648 158013 . + . ID=Physo138311;Parent=Physo138311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 153648 154706 . + 0 ID=Physo138311;Parent=Physo138311;rank=1 scaffold_62 . exon 153648 154706 . + . ID=Physo138311.1;Parent=Physo138311;constitutive=1;rank=1 scaffold_62 . CDS 154787 154879 . + 0 ID=Physo138311;Parent=Physo138311;rank=2 scaffold_62 . exon 154787 154879 . + . ID=Physo138311.2;Parent=Physo138311;constitutive=1;rank=2 scaffold_62 . CDS 154953 156181 . + 0 ID=Physo138311;Parent=Physo138311;rank=3 scaffold_62 . exon 154953 156181 . + . ID=Physo138311.3;Parent=Physo138311;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 156392 157816 . + 0 ID=Physo138311;Parent=Physo138311;rank=4 scaffold_62 . exon 156392 157816 . + . ID=Physo138311.4;Parent=Physo138311;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_62 . CDS 157899 158013 . + 0 ID=Physo138311;Parent=Physo138311;rank=5 scaffold_62 . exon 157899 158013 . + . ID=Physo138311.5;Parent=Physo138311;constitutive=1;ensembl_phase=2;rank=5 scaffold_62 ensembl protein_coding_gene 158428 158898 . + . ID=Physo138312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620048;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 158428 158898 . + . ID=Physo138312;Parent=Physo138312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 158428 158898 . + 0 ID=Physo138312;Parent=Physo138312;rank=1 scaffold_62 . exon 158428 158898 . + . ID=Physo138312.1;Parent=Physo138312;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 159265 159980 . - . ID=Physo138313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620049;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 159265 159980 . - . ID=Physo138313;Parent=Physo138313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 159265 159642 . - 0 ID=Physo138313;Parent=Physo138313;rank=2 scaffold_62 . exon 159265 159642 . - . ID=Physo138313.2;Parent=Physo138313;constitutive=1;rank=2 scaffold_62 . CDS 159708 159980 . - 0 ID=Physo138313;Parent=Physo138313;rank=1 scaffold_62 . exon 159708 159980 . - . ID=Physo138313.1;Parent=Physo138313;constitutive=1;rank=1 scaffold_62 . repeat_region 162615 162622 . ? . description=dust scaffold_62 . repeat_region 163474 163482 . ? . description=dust scaffold_62 . repeat_region 164634 164650 . ? . description=dust scaffold_62 . repeat_region 165963 165970 . ? . description=dust scaffold_62 . repeat_region 166745 166801 . ? . description=trf scaffold_62 . repeat_region 167967 167994 . ? . description=trf scaffold_62 . biological_region 168407 168409 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 164868 165536 . - . ID=Physo138314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620050;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 164868 165536 . - . ID=Physo138314;Parent=Physo138314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 164868 165536 . - 0 ID=Physo138314;Parent=Physo138314;rank=1 scaffold_62 . exon 164868 165536 . - . ID=Physo138314.1;Parent=Physo138314;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 177103 178446 . + . ID=Physo138315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620051;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 177103 178446 . + . ID=Physo138315;Parent=Physo138315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 177103 178446 . + 0 ID=Physo138315;Parent=Physo138315;rank=1 scaffold_62 . exon 177103 178446 . + . ID=Physo138315.1;Parent=Physo138315;constitutive=1;rank=1 scaffold_62 . repeat_region 182331 182339 . ? . description=dust scaffold_62 . biological_region 182967 182970 0.999 + . logic_name=eponine scaffold_62 . repeat_region 184378 184406 . ? . description=trf scaffold_62 . repeat_region 184386 184424 . ? . description=trf scaffold_62 . biological_region 184598 184599 0.999 + . logic_name=eponine scaffold_62 . biological_region 184723 184724 0.999 + . logic_name=eponine scaffold_62 . biological_region 184742 184746 0.999 + . logic_name=eponine scaffold_62 . repeat_region 184888 184917 . ? . description=dust scaffold_62 . repeat_region 184888 184917 . ? . description=trf scaffold_62 . repeat_region 184974 185007 . ? . description=trf scaffold_62 . biological_region 185924 185927 0.999 - . logic_name=eponine scaffold_62 . repeat_region 186554 186562 . ? . description=dust scaffold_62 . repeat_region 187517 187547 . ? . description=trf scaffold_62 . repeat_region 187878 187887 . ? . description=dust scaffold_62 . repeat_region 187974 188009 . ? . description=dust scaffold_62 . repeat_region 187974 188016 . ? . description=trf scaffold_62 . repeat_region 188895 188923 . ? . description=trf scaffold_62 ensembl protein_coding_gene 182568 183176 . + . ID=Physo109129;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_620006;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 182568 183176 . + . ID=Physo109129;Parent=Physo109129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 182568 183176 . + . ID=Physo109129.1;Parent=Physo109129;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 182571 183176 . + 0 ID=Physo109129;Parent=Physo109129;rank=1 scaffold_62 ensembl protein_coding_gene 185717 186325 . - . ID=Physo109130;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_620007;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 185717 186325 . - . ID=Physo109130;Parent=Physo109130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 185717 186322 . - 0 ID=Physo109130;Parent=Physo109130;rank=1 scaffold_62 . exon 185717 186325 . - . ID=Physo109130.1;Parent=Physo109130;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 ensembl protein_coding_gene 180434 181482 . + . ID=Physo138316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620052;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 180434 181482 . + . ID=Physo138316;Parent=Physo138316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 180434 181103 . + 0 ID=Physo138316;Parent=Physo138316;rank=1 scaffold_62 . exon 180434 181103 . + . ID=Physo138316.1;Parent=Physo138316;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 181361 181482 . + 0 ID=Physo138316;Parent=Physo138316;rank=2 scaffold_62 . exon 181361 181482 . + . ID=Physo138316.2;Parent=Physo138316;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 ensembl protein_coding_gene 184095 185068 . + . ID=Physo138318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620054;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 184095 185068 . + . ID=Physo138318;Parent=Physo138318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 184095 185068 . + . ID=Physo138318.1;Parent=Physo138318;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 184137 185018 . + 0 ID=Physo138318;Parent=Physo138318;rank=1 scaffold_62 ensembl protein_coding_gene 186686 187384 . + . ID=Physo138320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620056;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 186686 187384 . + . ID=Physo138320;Parent=Physo138320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 186686 186697 . + 0 ID=Physo138320;Parent=Physo138320;rank=1 scaffold_62 . exon 186686 186697 . + . ID=Physo138320.1;Parent=Physo138320;constitutive=1;rank=1 scaffold_62 . CDS 186749 187384 . + 0 ID=Physo138320;Parent=Physo138320;rank=2 scaffold_62 . exon 186749 187384 . + . ID=Physo138320.2;Parent=Physo138320;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 189875 191571 . - . ID=Physo138321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620057;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 189875 191571 . - . ID=Physo138321;Parent=Physo138321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 189875 190061 . - 0 ID=Physo138321;Parent=Physo138321;rank=4 scaffold_62 . exon 189875 190061 . - . ID=Physo138321.4;Parent=Physo138321;constitutive=1;ensembl_phase=2;rank=4 scaffold_62 . CDS 190156 191069 . - 0 ID=Physo138321;Parent=Physo138321;rank=3 scaffold_62 . exon 190156 191069 . - . ID=Physo138321.3;Parent=Physo138321;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_62 . CDS 191108 191472 . - 0 ID=Physo138321;Parent=Physo138321;rank=2 scaffold_62 . exon 191108 191472 . - . ID=Physo138321.2;Parent=Physo138321;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 191493 191571 . - 0 ID=Physo138321;Parent=Physo138321;rank=1 scaffold_62 . exon 191493 191571 . - . ID=Physo138321.1;Parent=Physo138321;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 191773 192605 . + . ID=Physo138322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620058;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 191773 192605 . + . ID=Physo138322;Parent=Physo138322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 191773 191886 . + 0 ID=Physo138322;Parent=Physo138322;rank=1 scaffold_62 . exon 191773 191886 . + . ID=Physo138322.1;Parent=Physo138322;constitutive=1;rank=1 scaffold_62 . CDS 191994 192605 . + 0 ID=Physo138322;Parent=Physo138322;rank=2 scaffold_62 . exon 191994 192605 . + . ID=Physo138322.2;Parent=Physo138322;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 194080 195144 . + . ID=Physo138323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620059;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 194080 195144 . + . ID=Physo138323;Parent=Physo138323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 194080 195144 . + 0 ID=Physo138323;Parent=Physo138323;rank=1 scaffold_62 . exon 194080 195144 . + . ID=Physo138323.1;Parent=Physo138323;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 197861 199701 . - . ID=Physo138326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620062;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 197861 199701 . - . ID=Physo138326;Parent=Physo138326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 197861 197983 . - 0 ID=Physo138326;Parent=Physo138326;rank=3 scaffold_62 . exon 197861 197983 . - . ID=Physo138326.3;Parent=Physo138326;constitutive=1;rank=3 scaffold_62 . CDS 198064 198227 . - 0 ID=Physo138326;Parent=Physo138326;rank=2 scaffold_62 . exon 198064 198227 . - . ID=Physo138326.2;Parent=Physo138326;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 198528 199701 . - 0 ID=Physo138326;Parent=Physo138326;rank=1 scaffold_62 . exon 198528 199701 . - . ID=Physo138326.1;Parent=Physo138326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 195378 195600 . + . ID=Physo157805;biotype=protein_coding;external_name=C_scaffold_62000013;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 195378 195600 . + . ID=Physo157805;Parent=Physo157805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 195378 195600 . + . ID=Physo157805.1;Parent=Physo157805;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 195379 195600 . + 0 ID=Physo157805;Parent=Physo157805;rank=1 scaffold_62 ensembl protein_coding_gene 195893 196561 . + . ID=Physo157806;biotype=protein_coding;external_name=C_scaffold_62000014;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 195893 196561 . + . ID=Physo157806;Parent=Physo157806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 195893 196561 . + 0 ID=Physo157806;Parent=Physo157806;rank=1 scaffold_62 . exon 195893 196561 . + . ID=Physo157806.1;Parent=Physo157806;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 196637 197215 . - . ID=Physo157807;biotype=protein_coding;external_name=C_scaffold_62000015;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 196637 197215 . - . ID=Physo157807;Parent=Physo157807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 196637 197215 . - 0 ID=Physo157807;Parent=Physo157807;rank=1 scaffold_62 . exon 196637 197215 . - . ID=Physo157807.1;Parent=Physo157807;constitutive=1;rank=1 scaffold_62 . biological_region 199780 199785 0.999 + . logic_name=eponine scaffold_62 . biological_region 199866 199872 0.999 - . logic_name=eponine scaffold_62 . biological_region 199875 199876 0.999 - . logic_name=eponine scaffold_62 . biological_region 201639 201643 0.999 - . logic_name=eponine scaffold_62 . repeat_region 201675 201682 . ? . description=dust scaffold_62 . biological_region 201748 201751 0.999 + . logic_name=eponine scaffold_62 . biological_region 201759 201759 0.999 + . logic_name=eponine scaffold_62 . biological_region 201772 201773 0.999 + . logic_name=eponine scaffold_62 . biological_region 201800 201807 0.999 + . logic_name=eponine scaffold_62 . biological_region 201806 201808 0.999 - . logic_name=eponine scaffold_62 . biological_region 201824 201832 0.999 - . logic_name=eponine scaffold_62 . biological_region 201825 201825 0.999 + . logic_name=eponine scaffold_62 . repeat_region 205108 205292 . ? . description=trf scaffold_62 . biological_region 205765 205765 0.999 + . logic_name=eponine scaffold_62 . biological_region 205794 205799 0.999 - . logic_name=eponine scaffold_62 . biological_region 205820 205824 0.999 + . logic_name=eponine scaffold_62 . biological_region 205849 205856 0.999 + . logic_name=eponine scaffold_62 . biological_region 205854 205859 0.999 - . logic_name=eponine scaffold_62 . biological_region 205872 205879 0.999 - . logic_name=eponine scaffold_62 . biological_region 205874 205880 0.999 + . logic_name=eponine scaffold_62 . biological_region 205930 205931 0.999 + . logic_name=eponine scaffold_62 . repeat_region 207923 207992 . ? . description=trf scaffold_62 . repeat_region 208982 209439 . ? . description=trf scaffold_62 ensembl protein_coding_gene 203984 215189 . + . ID=Physo138328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620064;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 203984 215189 . + . ID=Physo138328;Parent=Physo138328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 203984 205343 . + 0 ID=Physo138328;Parent=Physo138328;rank=1 scaffold_62 . exon 203984 205343 . + . ID=Physo138328.1;Parent=Physo138328;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 205717 206867 . + 0 ID=Physo138328;Parent=Physo138328;rank=2 scaffold_62 . exon 205717 206867 . + . ID=Physo138328.2;Parent=Physo138328;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 206940 209268 . + 0 ID=Physo138328;Parent=Physo138328;rank=3 scaffold_62 . exon 206940 209268 . + . ID=Physo138328.3;Parent=Physo138328;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_62 . CDS 209623 209790 . + 0 ID=Physo138328;Parent=Physo138328;rank=4 scaffold_62 . exon 209623 209790 . + . ID=Physo138328.4;Parent=Physo138328;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_62 . CDS 209956 210101 . + 0 ID=Physo138328;Parent=Physo138328;rank=5 scaffold_62 . CDS 210129 212923 . + 0 ID=Physo138328;Parent=Physo138328;rank=6 scaffold_62 . CDS 213078 213645 . + 0 ID=Physo138328;Parent=Physo138328;rank=7 scaffold_62 . CDS 213876 215189 . + 0 ID=Physo138328;Parent=Physo138328;rank=8 scaffold_62 ensembl protein_coding_gene 201691 202037 . + . ID=Physo157809;biotype=protein_coding;external_name=C_scaffold_62000017;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 201691 202037 . + . ID=Physo157809;Parent=Physo157809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 201691 201903 . + 0 ID=Physo157809;Parent=Physo157809;rank=1 scaffold_62 . exon 201691 201903 . + . ID=Physo157809.1;Parent=Physo157809;constitutive=1;rank=1 scaffold_62 . CDS 202017 202037 . + 0 ID=Physo157809;Parent=Physo157809;rank=2 scaffold_62 . exon 202017 202037 . + . ID=Physo157809.2;Parent=Physo157809;constitutive=1;rank=2 scaffold_62 . repeat_region 217322 217381 . + . description=(GCTG)n scaffold_62 . exon 209956 210101 . + . ID=Physo138328.5;Parent=Physo138328;constitutive=1;ensembl_phase=1;rank=5 scaffold_62 . exon 210129 212923 . + . ID=Physo138328.6;Parent=Physo138328;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_62 . exon 213078 213645 . + . ID=Physo138328.7;Parent=Physo138328;constitutive=1;ensembl_phase=2;rank=7 scaffold_62 . exon 213876 215189 . + . ID=Physo138328.8;Parent=Physo138328;constitutive=1;rank=8 scaffold_62 ensembl protein_coding_gene 215424 216009 . - . ID=Physo138329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620065;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 215424 216009 . - . ID=Physo138329;Parent=Physo138329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 215424 216009 . - . ID=Physo138329.1;Parent=Physo138329;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 215559 215921 . - 0 ID=Physo138329;Parent=Physo138329;rank=1 scaffold_62 ensembl protein_coding_gene 216724 217322 . - . ID=Physo138330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620066;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 216724 217322 . - . ID=Physo138330;Parent=Physo138330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 216724 217322 . - . ID=Physo138330.1;Parent=Physo138330;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_62 . CDS 216942 217322 . - 0 ID=Physo138330;Parent=Physo138330;rank=1 scaffold_62 ensembl protein_coding_gene 219593 220189 . - . ID=Physo138331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620067;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 219593 220189 . - . ID=Physo138331;Parent=Physo138331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 219593 220189 . - . ID=Physo138331.1;Parent=Physo138331;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 219658 220188 . - 0 ID=Physo138331;Parent=Physo138331;rank=1 scaffold_62 . biological_region 220511 220515 0.999 + . logic_name=eponine scaffold_62 . biological_region 220562 220571 0.999 - . logic_name=eponine scaffold_62 . biological_region 220578 220582 0.999 - . logic_name=eponine scaffold_62 . biological_region 220631 220634 0.999 - . logic_name=eponine scaffold_62 . repeat_region 221033 221051 . ? . description=dust scaffold_62 . biological_region 221388 221391 0.999 + . logic_name=eponine scaffold_62 . biological_region 221582 221584 0.999 - . logic_name=eponine scaffold_62 . biological_region 221638 221639 0.999 + . logic_name=eponine scaffold_62 . repeat_region 222863 222912 . ? . description=dust scaffold_62 . repeat_region 222939 222983 . + . description=(CCTG)n scaffold_62 . repeat_region 222943 222983 . ? . description=trf scaffold_62 . repeat_region 222956 222983 . ? . description=dust scaffold_62 . repeat_region 223398 223405 . ? . description=dust scaffold_62 . biological_region 225084 225088 0.999 + . logic_name=eponine scaffold_62 . biological_region 225135 225144 0.999 - . logic_name=eponine scaffold_62 . biological_region 225151 225155 0.999 - . logic_name=eponine scaffold_62 . biological_region 225204 225207 0.999 - . logic_name=eponine scaffold_62 . repeat_region 225606 225624 . ? . description=dust scaffold_62 . biological_region 225961 225964 0.999 + . logic_name=eponine scaffold_62 . biological_region 226155 226157 0.999 - . logic_name=eponine scaffold_62 . biological_region 226211 226212 0.999 + . logic_name=eponine scaffold_62 . repeat_region 228067 228076 . ? . description=dust scaffold_62 . repeat_region 228491 228516 . ? . description=dust scaffold_62 . repeat_region 228492 228520 . ? . description=trf scaffold_62 . biological_region 228530 228530 0.999 - . logic_name=eponine scaffold_62 . biological_region 228543 228546 0.999 + . logic_name=eponine scaffold_62 . biological_region 228611 228614 0.999 + . logic_name=eponine scaffold_62 . biological_region 228650 228650 0.999 - . logic_name=eponine scaffold_62 . biological_region 228795 228804 0.999 + . logic_name=eponine scaffold_62 . biological_region 229444 229448 0.999 - . logic_name=eponine scaffold_62 . repeat_region 229487 229578 . + . description=(CAGC)n scaffold_62 . repeat_region 229519 229556 . ? . description=dust scaffold_62 . repeat_region 229519 229556 . ? . description=trf scaffold_62 . biological_region 229583 229584 0.999 + . logic_name=eponine scaffold_62 ensembl protein_coding_gene 221279 222486 . + . ID=Physo138332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620068;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 221279 222486 . + . ID=Physo138332;Parent=Physo138332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 221279 222362 . + 0 ID=Physo138332;Parent=Physo138332;rank=1 scaffold_62 . exon 221279 222362 . + . ID=Physo138332.1;Parent=Physo138332;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 222420 222440 . + 0 ID=Physo138332;Parent=Physo138332;rank=2 scaffold_62 . exon 222420 222440 . + . ID=Physo138332.2;Parent=Physo138332;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 222467 222486 . + 0 ID=Physo138332;Parent=Physo138332;rank=3 scaffold_62 . exon 222467 222486 . + . ID=Physo138332.3;Parent=Physo138332;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 ensembl protein_coding_gene 224166 224762 . - . ID=Physo138333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620069;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 224166 224762 . - . ID=Physo138333;Parent=Physo138333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 224166 224762 . - . ID=Physo138333.1;Parent=Physo138333;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 224231 224761 . - 0 ID=Physo138333;Parent=Physo138333;rank=1 scaffold_62 ensembl protein_coding_gene 225852 227059 . + . ID=Physo138334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620070;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 225852 227059 . + . ID=Physo138334;Parent=Physo138334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 225852 226935 . + 0 ID=Physo138334;Parent=Physo138334;rank=1 scaffold_62 . exon 225852 226935 . + . ID=Physo138334.1;Parent=Physo138334;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 226993 227013 . + 0 ID=Physo138334;Parent=Physo138334;rank=2 scaffold_62 . exon 226993 227013 . + . ID=Physo138334.2;Parent=Physo138334;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 227040 227059 . + 0 ID=Physo138334;Parent=Physo138334;rank=3 scaffold_62 . exon 227040 227059 . + . ID=Physo138334.3;Parent=Physo138334;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 ensembl protein_coding_gene 229578 230176 . + . ID=Physo138335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620071;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 229578 230176 . + . ID=Physo138335;Parent=Physo138335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 229578 229958 . + 0 ID=Physo138335;Parent=Physo138335;rank=1 scaffold_62 . exon 229578 230176 . + . ID=Physo138335.1;Parent=Physo138335;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_62 ensembl protein_coding_gene 230891 231473 . + . ID=Physo138336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620072;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 230891 231473 . + . ID=Physo138336;Parent=Physo138336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 230891 231473 . + . ID=Physo138336.1;Parent=Physo138336;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 230979 231341 . + 0 ID=Physo138336;Parent=Physo138336;rank=1 scaffold_62 ensembl protein_coding_gene 233629 234659 . + . ID=Physo138337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620073;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 233629 234659 . + . ID=Physo138337;Parent=Physo138337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 233629 233824 . + 0 ID=Physo138337;Parent=Physo138337;rank=1 scaffold_62 . exon 233629 233824 . + . ID=Physo138337.1;Parent=Physo138337;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 233890 233957 . + 0 ID=Physo138337;Parent=Physo138337;rank=2 scaffold_62 . exon 233890 233957 . + . ID=Physo138337.2;Parent=Physo138337;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 234009 234659 . + 0 ID=Physo138337;Parent=Physo138337;rank=3 scaffold_62 . exon 234009 234659 . + . ID=Physo138337.3;Parent=Physo138337;constitutive=1;rank=3 scaffold_62 ensembl protein_coding_gene 237199 238506 . - . ID=Physo138338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620074;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 237199 238506 . - . ID=Physo138338;Parent=Physo138338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 237199 238506 . - 0 ID=Physo138338;Parent=Physo138338;rank=1 scaffold_62 . exon 237199 238506 . - . ID=Physo138338.1;Parent=Physo138338;constitutive=1;rank=1 scaffold_62 . biological_region 240521 240524 0.999 + . logic_name=eponine scaffold_62 . biological_region 240584 240587 0.999 + . logic_name=eponine scaffold_62 . biological_region 240743 240749 0.999 + . logic_name=eponine scaffold_62 . biological_region 240839 240842 0.999 - . logic_name=eponine scaffold_62 . biological_region 240940 240944 0.999 - . logic_name=eponine scaffold_62 . repeat_region 242421 242457 . ? . description=trf scaffold_62 . biological_region 244503 244506 0.999 + . logic_name=eponine scaffold_62 . repeat_region 245624 246056 . ? . description=dust scaffold_62 . repeat_region 247744 247793 . ? . description=dust scaffold_62 . biological_region 247897 247898 0.999 + . logic_name=eponine scaffold_62 . biological_region 248295 248296 0.999 + . logic_name=eponine scaffold_62 . biological_region 248838 248843 0.999 - . logic_name=eponine scaffold_62 . repeat_region 248874 248885 . ? . description=dust scaffold_62 . repeat_region 249008 249057 . ? . description=dust scaffold_62 ensembl protein_coding_gene 240468 241414 . + . ID=Physo138339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620075;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 240468 241414 . + . ID=Physo138339;Parent=Physo138339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 240468 241371 . + . ID=Physo138339.1;Parent=Physo138339;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 240478 241365 . + 0 ID=Physo138339;Parent=Physo138339;rank=1 scaffold_62 . exon 241402 241414 . + . ID=Physo138339.2;Parent=Physo138339;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_62 ensembl protein_coding_gene 247461 248443 . - . ID=Physo138340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620076;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 247461 248443 . - . ID=Physo138340;Parent=Physo138340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 247461 247524 . - 0 ID=Physo138340;Parent=Physo138340;rank=2 scaffold_62 . exon 247461 247524 . - . ID=Physo138340.2;Parent=Physo138340;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 247800 248443 . - 0 ID=Physo138340;Parent=Physo138340;rank=1 scaffold_62 . exon 247800 248443 . - . ID=Physo138340.1;Parent=Physo138340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 252766 253708 . + . ID=Physo138341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620077;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 252766 253708 . + . ID=Physo138341;Parent=Physo138341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 252766 253563 . + 0 ID=Physo138341;Parent=Physo138341;rank=1 scaffold_62 . exon 252766 253708 . + . ID=Physo138341.1;Parent=Physo138341;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_62 ensembl protein_coding_gene 254785 256528 . - . ID=Physo138342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620078;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 254785 256528 . - . ID=Physo138342;Parent=Physo138342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 254785 254983 . - 0 ID=Physo138342;Parent=Physo138342;rank=2 scaffold_62 . exon 254785 254983 . - . ID=Physo138342.2;Parent=Physo138342;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 255069 256528 . - 0 ID=Physo138342;Parent=Physo138342;rank=1 scaffold_62 . exon 255069 256528 . - . ID=Physo138342.1;Parent=Physo138342;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 257015 260857 . + . ID=Physo138343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620079;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 257015 260857 . + . ID=Physo138343;Parent=Physo138343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 257015 257410 . + 0 ID=Physo138343;Parent=Physo138343;rank=1 scaffold_62 . exon 257015 257410 . + . ID=Physo138343.1;Parent=Physo138343;constitutive=1;rank=1 scaffold_62 . CDS 257508 257643 . + 0 ID=Physo138343;Parent=Physo138343;rank=2 scaffold_62 . exon 257508 257643 . + . ID=Physo138343.2;Parent=Physo138343;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_62 . CDS 257728 258209 . + 0 ID=Physo138343;Parent=Physo138343;rank=3 scaffold_62 . exon 257728 258209 . + . ID=Physo138343.3;Parent=Physo138343;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 258277 258618 . + 0 ID=Physo138343;Parent=Physo138343;rank=4 scaffold_62 . exon 258277 258618 . + . ID=Physo138343.4;Parent=Physo138343;constitutive=1;rank=4 scaffold_62 . CDS 258699 258834 . + 0 ID=Physo138343;Parent=Physo138343;rank=5 scaffold_62 . exon 258699 258834 . + . ID=Physo138343.5;Parent=Physo138343;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_62 . CDS 258874 259159 . + 0 ID=Physo138343;Parent=Physo138343;rank=6 scaffold_62 . exon 258874 259159 . + . ID=Physo138343.6;Parent=Physo138343;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_62 . CDS 259250 259340 . + 0 ID=Physo138343;Parent=Physo138343;rank=7 scaffold_62 . exon 259250 259340 . + . ID=Physo138343.7;Parent=Physo138343;constitutive=1;ensembl_phase=2;rank=7 scaffold_62 . CDS 259511 259612 . + 0 ID=Physo138343;Parent=Physo138343;rank=8 scaffold_62 . exon 259511 259612 . + . ID=Physo138343.8;Parent=Physo138343;constitutive=1;rank=8 scaffold_62 . CDS 260074 260806 . + 0 ID=Physo138343;Parent=Physo138343;rank=9 scaffold_62 . CDS 260835 260857 . + 0 ID=Physo138343;Parent=Physo138343;rank=10 scaffold_62 . repeat_region 266974 268903 . ? . description=dust scaffold_62 . repeat_region 269212 269226 . ? . description=dust scaffold_62 . repeat_region 269252 269259 . ? . description=dust scaffold_62 . exon 260074 260806 . + . ID=Physo138343.9;Parent=Physo138343;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_62 . exon 260835 260857 . + . ID=Physo138343.10;Parent=Physo138343;constitutive=1;ensembl_phase=1;rank=10 scaffold_62 ensembl protein_coding_gene 271370 271630 . - . ID=Physo119433;biotype=protein_coding;external_name=estExt_Genewise1.C_620094;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 271370 271630 . - . ID=Physo119433;Parent=Physo119433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 271370 271627 . - 0 ID=Physo119433;Parent=Physo119433;rank=1 scaffold_62 . exon 271370 271630 . - . ID=Physo119433.1;Parent=Physo119433;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 . repeat_region 273493 281727 . ? . description=dust scaffold_62 . repeat_region 282153 282168 . ? . description=dust scaffold_62 . repeat_region 283522 284442 . ? . description=dust scaffold_62 . biological_region 284640 284646 0.999 + . logic_name=eponine scaffold_62 . biological_region 284677 284681 0.999 - . logic_name=eponine scaffold_62 . biological_region 284756 284758 0.999 - . logic_name=eponine scaffold_62 . biological_region 285520 285523 0.999 + . logic_name=eponine scaffold_62 . repeat_region 287780 287936 . ? . description=trf scaffold_62 . biological_region 287945 287951 0.999 - . logic_name=eponine scaffold_62 . repeat_region 287988 288059 . ? . description=trf scaffold_62 . repeat_region 288000 288067 . ? . description=trf scaffold_62 . biological_region 288001 288004 0.999 - . logic_name=eponine scaffold_62 . repeat_region 288639 288663 . ? . description=trf scaffold_62 ensembl protein_coding_gene 288843 289352 . + . ID=Physo119340;biotype=protein_coding;external_name=estExt_Genewise1.C_620001;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 288843 289352 . + . ID=Physo119340;Parent=Physo119340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 288843 289352 . + 0 ID=Physo119340;Parent=Physo119340;rank=1 scaffold_62 . exon 288843 289352 . + . ID=Physo119340.1;Parent=Physo119340;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 285024 285794 . + . ID=Physo138344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620080;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 285024 285794 . + . ID=Physo138344;Parent=Physo138344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 285024 285794 . + 0 ID=Physo138344;Parent=Physo138344;rank=1 scaffold_62 . exon 285024 285794 . + . ID=Physo138344.1;Parent=Physo138344;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 287238 288104 . + . ID=Physo138345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620081;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 287238 288104 . + . ID=Physo138345;Parent=Physo138345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 287238 288104 . + 0 ID=Physo138345;Parent=Physo138345;rank=1 scaffold_62 . exon 287238 288104 . + . ID=Physo138345.1;Parent=Physo138345;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 290957 291856 . + . ID=Physo138347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620083;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 290957 291856 . + . ID=Physo138347;Parent=Physo138347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 290957 291856 . + 0 ID=Physo138347;Parent=Physo138347;rank=1 scaffold_62 . exon 290957 291856 . + . ID=Physo138347.1;Parent=Physo138347;constitutive=1;rank=1 scaffold_62 . repeat_region 300214 300226 . ? . description=dust scaffold_62 . repeat_region 301516 301578 . ? . description=trf scaffold_62 . repeat_region 302405 302444 . ? . description=dust scaffold_62 . repeat_region 306072 306146 . ? . description=trf scaffold_62 . repeat_region 306484 306511 . ? . description=trf scaffold_62 . repeat_region 307616 307623 . ? . description=dust scaffold_62 . repeat_region 307637 307679 . ? . description=dust scaffold_62 . biological_region 308896 308898 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 300266 302266 . + . ID=Physo138348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620084;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 300266 302266 . + . ID=Physo138348;Parent=Physo138348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 300266 300715 . + 0 ID=Physo138348;Parent=Physo138348;rank=1 scaffold_62 . exon 300266 300715 . + . ID=Physo138348.1;Parent=Physo138348;constitutive=1;rank=1 scaffold_62 . CDS 300740 302266 . + 0 ID=Physo138348;Parent=Physo138348;rank=2 scaffold_62 . exon 300740 302266 . + . ID=Physo138348.2;Parent=Physo138348;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 308535 309225 . + . ID=Physo138349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620085;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 308535 309225 . + . ID=Physo138349;Parent=Physo138349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 308535 308904 . + 0 ID=Physo138349;Parent=Physo138349;rank=1 scaffold_62 . exon 308535 308904 . + . ID=Physo138349.1;Parent=Physo138349;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 308981 309225 . + 0 ID=Physo138349;Parent=Physo138349;rank=2 scaffold_62 . exon 308981 309225 . + . ID=Physo138349.2;Parent=Physo138349;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 ensembl protein_coding_gene 309268 310194 . - . ID=Physo138350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620086;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 309268 310194 . - . ID=Physo138350;Parent=Physo138350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 309268 309486 . - . ID=Physo138350.5;Parent=Physo138350;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_62 . CDS 309427 309486 . - 0 ID=Physo138350;Parent=Physo138350;rank=5 scaffold_62 . CDS 309558 309637 . - 0 ID=Physo138350;Parent=Physo138350;rank=4 scaffold_62 . CDS 309711 309807 . - 0 ID=Physo138350;Parent=Physo138350;rank=3 scaffold_62 . CDS 309888 310069 . - 0 ID=Physo138350;Parent=Physo138350;rank=2 scaffold_62 . CDS 310145 310178 . - 0 ID=Physo138350;Parent=Physo138350;rank=1 scaffold_62 ensembl protein_coding_gene 318229 318738 . - . ID=Physo119341;biotype=protein_coding;external_name=estExt_Genewise1.C_620002;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 318229 318738 . - . ID=Physo119341;Parent=Physo119341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 318229 318738 . - 0 ID=Physo119341;Parent=Physo119341;rank=1 scaffold_62 . exon 318229 318738 . - . ID=Physo119341.1;Parent=Physo119341;constitutive=1;rank=1 scaffold_62 . exon 309558 309637 . - . ID=Physo138350.4;Parent=Physo138350;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . exon 309711 309807 . - . ID=Physo138350.3;Parent=Physo138350;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_62 . exon 309888 310069 . - . ID=Physo138350.2;Parent=Physo138350;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . exon 310145 310194 . - . ID=Physo138350.1;Parent=Physo138350;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_62 ensembl protein_coding_gene 310376 312177 . + . ID=Physo138351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620087;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 310376 312177 . + . ID=Physo138351;Parent=Physo138351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 310376 311404 . + 0 ID=Physo138351;Parent=Physo138351;rank=1 scaffold_62 . exon 310376 311404 . + . ID=Physo138351.1;Parent=Physo138351;constitutive=1;rank=1 scaffold_62 . CDS 311481 311550 . + 0 ID=Physo138351;Parent=Physo138351;rank=2 scaffold_62 . exon 311481 311550 . + . ID=Physo138351.2;Parent=Physo138351;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_62 . CDS 311628 311779 . + 0 ID=Physo138351;Parent=Physo138351;rank=3 scaffold_62 . exon 311628 311779 . + . ID=Physo138351.3;Parent=Physo138351;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 311857 312177 . + 0 ID=Physo138351;Parent=Physo138351;rank=4 scaffold_62 . exon 311857 312177 . + . ID=Physo138351.4;Parent=Physo138351;constitutive=1;rank=4 scaffold_62 ensembl protein_coding_gene 312474 313463 . - . ID=Physo138352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620088;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 312474 313463 . - . ID=Physo138352;Parent=Physo138352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 312474 312482 . - 0 ID=Physo138352;Parent=Physo138352;rank=4 scaffold_62 . exon 312474 312482 . - . ID=Physo138352.4;Parent=Physo138352;constitutive=1;rank=4 scaffold_62 . CDS 312562 313215 . - 0 ID=Physo138352;Parent=Physo138352;rank=3 scaffold_62 . exon 312562 313215 . - . ID=Physo138352.3;Parent=Physo138352;constitutive=1;rank=3 scaffold_62 . CDS 313285 313376 . - 0 ID=Physo138352;Parent=Physo138352;rank=2 scaffold_62 . exon 313285 313376 . - . ID=Physo138352.2;Parent=Physo138352;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 313424 313463 . - 0 ID=Physo138352;Parent=Physo138352;rank=1 scaffold_62 . exon 313424 313463 . - . ID=Physo138352.1;Parent=Physo138352;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 ensembl protein_coding_gene 313969 314991 . + . ID=Physo138353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620089;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 313969 314991 . + . ID=Physo138353;Parent=Physo138353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 313969 314991 . + 0 ID=Physo138353;Parent=Physo138353;rank=1 scaffold_62 . exon 313969 314991 . + . ID=Physo138353.1;Parent=Physo138353;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 315717 316619 . - . ID=Physo138354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620090;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 315717 316619 . - . ID=Physo138354;Parent=Physo138354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 315717 316619 . - 0 ID=Physo138354;Parent=Physo138354;rank=1 scaffold_62 . exon 315717 316619 . - . ID=Physo138354.1;Parent=Physo138354;constitutive=1;rank=1 scaffold_62 . repeat_region 320323 320339 . ? . description=dust scaffold_62 . biological_region 324681 324682 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 320375 321664 . - . ID=Physo138356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620092;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 320375 321664 . - . ID=Physo138356;Parent=Physo138356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 320375 321664 . - 0 ID=Physo138356;Parent=Physo138356;rank=1 scaffold_62 . exon 320375 321664 . - . ID=Physo138356.1;Parent=Physo138356;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 323138 324161 . - . ID=Physo157816;biotype=protein_coding;external_name=C_scaffold_62000024;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 323138 324161 . - . ID=Physo157816;Parent=Physo157816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 323138 323476 . - 0 ID=Physo157816;Parent=Physo157816;rank=5 scaffold_62 . exon 323138 323476 . - . ID=Physo157816.5;Parent=Physo157816;constitutive=1;rank=5 scaffold_62 . CDS 323560 323668 . - 0 ID=Physo157816;Parent=Physo157816;rank=4 scaffold_62 . exon 323560 323668 . - . ID=Physo157816.4;Parent=Physo157816;constitutive=1;ensembl_phase=2;rank=4 scaffold_62 . CDS 323745 323769 . - 0 ID=Physo157816;Parent=Physo157816;rank=3 scaffold_62 . exon 323745 323769 . - . ID=Physo157816.3;Parent=Physo157816;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_62 . CDS 323866 324040 . - 0 ID=Physo157816;Parent=Physo157816;rank=2 scaffold_62 . exon 323866 324040 . - . ID=Physo157816.2;Parent=Physo157816;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_62 . CDS 324108 324161 . - 0 ID=Physo157816;Parent=Physo157816;rank=1 scaffold_62 . exon 324108 324161 . - . ID=Physo157816.1;Parent=Physo157816;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 324552 326146 . + . ID=Physo157817;biotype=protein_coding;external_name=C_scaffold_62000025;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 324552 326146 . + . ID=Physo157817;Parent=Physo157817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 324552 324688 . + 0 ID=Physo157817;Parent=Physo157817;rank=1 scaffold_62 . exon 324552 324688 . + . ID=Physo157817.1;Parent=Physo157817;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 324791 325214 . + 0 ID=Physo157817;Parent=Physo157817;rank=2 scaffold_62 . exon 324791 325214 . + . ID=Physo157817.2;Parent=Physo157817;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 325308 325641 . + 0 ID=Physo157817;Parent=Physo157817;rank=3 scaffold_62 . exon 325308 325641 . + . ID=Physo157817.3;Parent=Physo157817;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_62 . CDS 325707 325912 . + 0 ID=Physo157817;Parent=Physo157817;rank=4 scaffold_62 . exon 325707 325912 . + . ID=Physo157817.4;Parent=Physo157817;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . CDS 325978 326103 . + 0 ID=Physo157817;Parent=Physo157817;rank=5 scaffold_62 . exon 325978 326103 . + . ID=Physo157817.5;Parent=Physo157817;constitutive=1;rank=5 scaffold_62 . CDS 326135 326146 . + 0 ID=Physo157817;Parent=Physo157817;rank=6 scaffold_62 . exon 326135 326146 . + . ID=Physo157817.6;Parent=Physo157817;constitutive=1;rank=6 scaffold_62 ensembl protein_coding_gene 329959 332182 . - . ID=Physo138359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620095;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 329959 332182 . - . ID=Physo138359;Parent=Physo138359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 329959 331431 . - 0 ID=Physo138359;Parent=Physo138359;rank=5 scaffold_62 . exon 329959 331431 . - . ID=Physo138359.5;Parent=Physo138359;constitutive=1;rank=5 scaffold_62 . CDS 331503 331607 . - 0 ID=Physo138359;Parent=Physo138359;rank=4 scaffold_62 . exon 331503 331607 . - . ID=Physo138359.4;Parent=Physo138359;constitutive=1;rank=4 scaffold_62 . CDS 331679 331729 . - 0 ID=Physo138359;Parent=Physo138359;rank=3 scaffold_62 . exon 331679 331729 . - . ID=Physo138359.3;Parent=Physo138359;constitutive=1;rank=3 scaffold_62 . CDS 331801 331912 . - 0 ID=Physo138359;Parent=Physo138359;rank=2 scaffold_62 . exon 331801 331912 . - . ID=Physo138359.2;Parent=Physo138359;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 331992 332182 . - 0 ID=Physo138359;Parent=Physo138359;rank=1 scaffold_62 . exon 331992 332182 . - . ID=Physo138359.1;Parent=Physo138359;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 332425 335246 . + . ID=Physo138360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620096;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 332425 335246 . + . ID=Physo138360;Parent=Physo138360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 332425 333498 . + 0 ID=Physo138360;Parent=Physo138360;rank=1 scaffold_62 . exon 332425 333498 . + . ID=Physo138360.1;Parent=Physo138360;constitutive=1;rank=1 scaffold_62 . CDS 333585 335246 . + 0 ID=Physo138360;Parent=Physo138360;rank=2 scaffold_62 . exon 333585 335246 . + . ID=Physo138360.2;Parent=Physo138360;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 337166 338577 . + . ID=Physo157820;biotype=protein_coding;external_name=C_scaffold_62000028;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 337166 338577 . + . ID=Physo157820;Parent=Physo157820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 337166 337183 . + 0 ID=Physo157820;Parent=Physo157820;rank=1 scaffold_62 . exon 337166 337183 . + . ID=Physo157820.1;Parent=Physo157820;constitutive=1;rank=1 scaffold_62 . CDS 337465 337685 . + 0 ID=Physo157820;Parent=Physo157820;rank=2 scaffold_62 . exon 337465 337685 . + . ID=Physo157820.2;Parent=Physo157820;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_62 . CDS 337857 337959 . + 0 ID=Physo157820;Parent=Physo157820;rank=3 scaffold_62 . exon 337857 337959 . + . ID=Physo157820.3;Parent=Physo157820;constitutive=1;ensembl_phase=2;rank=3 scaffold_62 . CDS 338024 338173 . + 0 ID=Physo157820;Parent=Physo157820;rank=4 scaffold_62 . exon 338024 338173 . + . ID=Physo157820.4;Parent=Physo157820;constitutive=1;rank=4 scaffold_62 . CDS 338247 338383 . + 0 ID=Physo157820;Parent=Physo157820;rank=5 scaffold_62 . exon 338247 338383 . + . ID=Physo157820.5;Parent=Physo157820;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_62 . CDS 338476 338577 . + 0 ID=Physo157820;Parent=Physo157820;rank=6 scaffold_62 . exon 338476 338577 . + . ID=Physo157820.6;Parent=Physo157820;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_62 . repeat_region 339443 339495 . ? . description=dust scaffold_62 . repeat_region 339469 339495 . ? . description=trf scaffold_62 . biological_region 345609 345612 0.999 + . logic_name=eponine scaffold_62 . biological_region 345618 345624 0.999 - . logic_name=eponine scaffold_62 . repeat_region 347195 347210 . ? . description=dust scaffold_62 ensembl protein_coding_gene 339499 341490 . + . ID=Physo109131;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_620008;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 339499 341490 . + . ID=Physo109131;Parent=Physo109131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 339499 341490 . + 0 ID=Physo109131;Parent=Physo109131;rank=1 scaffold_62 . exon 339499 341490 . + . ID=Physo109131.1;Parent=Physo109131;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 341577 342243 . - . ID=Physo109132;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84XT3];external_name=estExt_fgenesh1_pm.C_620009;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 341577 342243 . - . ID=Physo109132;Parent=Physo109132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 341577 342243 . - . ID=Physo109132.1;Parent=Physo109132;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 341696 342211 . - 0 ID=Physo109132;Parent=Physo109132;rank=1 scaffold_62 ensembl protein_coding_gene 344533 346548 . - . ID=Physo109133;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_620010;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 344533 346548 . - . ID=Physo109133;Parent=Physo109133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 344533 346518 . - 0 ID=Physo109133;Parent=Physo109133;rank=1 scaffold_62 . exon 344533 346548 . - . ID=Physo109133.1;Parent=Physo109133;constitutive=1;ensembl_phase=-1;rank=1 scaffold_62 ensembl protein_coding_gene 343004 343373 . - . ID=Physo138363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620099;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 343004 343373 . - . ID=Physo138363;Parent=Physo138363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 343004 343247 . - 0 ID=Physo138363;Parent=Physo138363;rank=2 scaffold_62 . exon 343004 343247 . - . ID=Physo138363.2;Parent=Physo138363;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 . CDS 343267 343373 . - 0 ID=Physo138363;Parent=Physo138363;rank=1 scaffold_62 . exon 343267 343373 . - . ID=Physo138363.1;Parent=Physo138363;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 ensembl protein_coding_gene 348053 348555 . + . ID=Physo138365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620101;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 348053 348555 . + . ID=Physo138365;Parent=Physo138365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 348053 348076 . + 0 ID=Physo138365;Parent=Physo138365;rank=1 scaffold_62 . exon 348053 348076 . + . ID=Physo138365.1;Parent=Physo138365;constitutive=1;rank=1 scaffold_62 . CDS 348181 348555 . + 0 ID=Physo138365;Parent=Physo138365;rank=2 scaffold_62 . exon 348181 348555 . + . ID=Physo138365.2;Parent=Physo138365;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 348818 350284 . + . ID=Physo138366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620102;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 348818 350284 . + . ID=Physo138366;Parent=Physo138366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 348818 350284 . + 0 ID=Physo138366;Parent=Physo138366;rank=1 scaffold_62 . exon 348818 350284 . + . ID=Physo138366.1;Parent=Physo138366;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 355988 357247 . - . ID=Physo119349;biotype=protein_coding;external_name=estExt_Genewise1.C_620010;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 355988 357247 . - . ID=Physo119349;Parent=Physo119349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 355988 356203 . - . ID=Physo119349.3;Parent=Physo119349;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_62 . exon 356381 356437 . - . ID=Physo119349.2;Parent=Physo119349;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_62 . CDS 356383 356437 . - 0 ID=Physo119349;Parent=Physo119349;rank=2 scaffold_62 . CDS 356550 356947 . - 0 ID=Physo119349;Parent=Physo119349;rank=1 scaffold_62 . exon 356550 357247 . - . ID=Physo119349.1;Parent=Physo119349;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_62 ensembl protein_coding_gene 350797 351570 . + . ID=Physo138367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620103;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 350797 351570 . + . ID=Physo138367;Parent=Physo138367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 350797 351570 . + 0 ID=Physo138367;Parent=Physo138367;rank=1 scaffold_62 . exon 350797 351570 . + . ID=Physo138367.1;Parent=Physo138367;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 351968 353517 . + . ID=Physo138368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620104;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 351968 353517 . + . ID=Physo138368;Parent=Physo138368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 351968 352344 . + 0 ID=Physo138368;Parent=Physo138368;rank=1 scaffold_62 . exon 351968 352344 . + . ID=Physo138368.1;Parent=Physo138368;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 352368 353517 . + 0 ID=Physo138368;Parent=Physo138368;rank=2 scaffold_62 . exon 352368 353517 . + . ID=Physo138368.2;Parent=Physo138368;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 ensembl protein_coding_gene 354883 355444 . + . ID=Physo138369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620105;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 354883 355444 . + . ID=Physo138369;Parent=Physo138369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . exon 354883 355355 . + . ID=Physo138369.1;Parent=Physo138369;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_62 . CDS 355116 355244 . + 0 ID=Physo138369;Parent=Physo138369;rank=1 scaffold_62 . exon 355420 355444 . + . ID=Physo138369.2;Parent=Physo138369;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_62 ensembl protein_coding_gene 357982 362079 . + . ID=Physo138371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620107;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 357982 362079 . + . ID=Physo138371;Parent=Physo138371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 357982 362079 . + 0 ID=Physo138371;Parent=Physo138371;rank=1 scaffold_62 . exon 357982 362079 . + . ID=Physo138371.1;Parent=Physo138371;constitutive=1;rank=1 scaffold_62 . biological_region 362098 362098 0.999 - . logic_name=eponine scaffold_62 . repeat_region 364672 364679 . ? . description=dust scaffold_62 . repeat_region 365142 365208 . ? . description=trf scaffold_62 . repeat_region 365147 365222 . ? . description=trf scaffold_62 . repeat_region 368239 368288 . ? . description=dust scaffold_62 ensembl protein_coding_gene 366893 367672 . + . ID=Physo138372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620108;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 366893 367672 . + . ID=Physo138372;Parent=Physo138372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 366893 367039 . + 0 ID=Physo138372;Parent=Physo138372;rank=1 scaffold_62 . exon 366893 367039 . + . ID=Physo138372.1;Parent=Physo138372;constitutive=1;rank=1 scaffold_62 . CDS 367139 367672 . + 0 ID=Physo138372;Parent=Physo138372;rank=2 scaffold_62 . exon 367139 367672 . + . ID=Physo138372.2;Parent=Physo138372;constitutive=1;rank=2 scaffold_62 ensembl protein_coding_gene 368554 368874 . + . ID=Physo138373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620109;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 368554 368874 . + . ID=Physo138373;Parent=Physo138373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 368554 368874 . + 0 ID=Physo138373;Parent=Physo138373;rank=1 scaffold_62 . exon 368554 368874 . + . ID=Physo138373.1;Parent=Physo138373;constitutive=1;rank=1 scaffold_62 . repeat_region 372093 372227 . - . description=GypsyPi-1c_I-int scaffold_62 . repeat_region 372729 375654 . - . description=GypsyPi-1c_I-int scaffold_62 . repeat_region 376248 376426 . - . description=GypsyPi-1c_I-int scaffold_62 ensembl protein_coding_gene 371024 372799 . + . ID=Physo138374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620110;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 371024 372799 . + . ID=Physo138374;Parent=Physo138374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 371024 372799 . + 0 ID=Physo138374;Parent=Physo138374;rank=1 scaffold_62 . exon 371024 372799 . + . ID=Physo138374.1;Parent=Physo138374;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 373054 375639 . - . ID=Physo138375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620111;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 373054 375639 . - . ID=Physo138375;Parent=Physo138375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 373054 373058 . - 0 ID=Physo138375;Parent=Physo138375;rank=8 scaffold_62 . exon 373054 373058 . - . ID=Physo138375.8;Parent=Physo138375;constitutive=1;ensembl_phase=1;rank=8 scaffold_62 . CDS 373127 373548 . - 0 ID=Physo138375;Parent=Physo138375;rank=7 scaffold_62 . exon 373127 373548 . - . ID=Physo138375.7;Parent=Physo138375;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_62 . CDS 373625 373986 . - 0 ID=Physo138375;Parent=Physo138375;rank=6 scaffold_62 . exon 373625 373986 . - . ID=Physo138375.6;Parent=Physo138375;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_62 . CDS 374130 374240 . - 0 ID=Physo138375;Parent=Physo138375;rank=5 scaffold_62 . exon 374130 374240 . - . ID=Physo138375.5;Parent=Physo138375;constitutive=1;rank=5 scaffold_62 . CDS 374262 374600 . - 0 ID=Physo138375;Parent=Physo138375;rank=4 scaffold_62 . exon 374262 374600 . - . ID=Physo138375.4;Parent=Physo138375;constitutive=1;rank=4 scaffold_62 . CDS 374661 375100 . - 0 ID=Physo138375;Parent=Physo138375;rank=3 scaffold_62 . exon 374661 375100 . - . ID=Physo138375.3;Parent=Physo138375;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . CDS 375252 375330 . - 0 ID=Physo138375;Parent=Physo138375;rank=2 scaffold_62 . exon 375252 375330 . - . ID=Physo138375.2;Parent=Physo138375;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_62 . CDS 375448 375639 . - 0 ID=Physo138375;Parent=Physo138375;rank=1 scaffold_62 . exon 375448 375639 . - . ID=Physo138375.1;Parent=Physo138375;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 377856 378364 . + . ID=Physo138376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620112;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 377856 378364 . + . ID=Physo138376;Parent=Physo138376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 377856 378196 . + 0 ID=Physo138376;Parent=Physo138376;rank=1 scaffold_62 . exon 377856 378196 . + . ID=Physo138376.1;Parent=Physo138376;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_62 . CDS 378271 378364 . + 0 ID=Physo138376;Parent=Physo138376;rank=2 scaffold_62 . exon 378271 378364 . + . ID=Physo138376.2;Parent=Physo138376;constitutive=1;ensembl_phase=2;rank=2 scaffold_62 ensembl protein_coding_gene 378543 381761 . + . ID=Physo157822;biotype=protein_coding;external_name=C_scaffold_62000030;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 378543 381761 . + . ID=Physo157822;Parent=Physo157822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 378543 378930 . + 0 ID=Physo157822;Parent=Physo157822;rank=1 scaffold_62 . exon 378543 378930 . + . ID=Physo157822.1;Parent=Physo157822;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 379000 380376 . + 0 ID=Physo157822;Parent=Physo157822;rank=2 scaffold_62 . exon 379000 380376 . + . ID=Physo157822.2;Parent=Physo157822;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 380485 381014 . + 0 ID=Physo157822;Parent=Physo157822;rank=3 scaffold_62 . CDS 381079 381164 . + 0 ID=Physo157822;Parent=Physo157822;rank=4 scaffold_62 . CDS 381236 381603 . + 0 ID=Physo157822;Parent=Physo157822;rank=5 scaffold_62 . CDS 381709 381761 . + 0 ID=Physo157822;Parent=Physo157822;rank=6 scaffold_62 . repeat_region 383293 383301 . ? . description=dust scaffold_62 . repeat_region 387421 387451 . ? . description=trf scaffold_62 . repeat_region 387567 387574 . ? . description=dust scaffold_62 ensembl protein_coding_gene 382067 382405 . - . ID=Physo138378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620114;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 382067 382405 . - . ID=Physo138378;Parent=Physo138378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 382067 382405 . - 0 ID=Physo138378;Parent=Physo138378;rank=1 scaffold_62 . exon 382067 382405 . - . ID=Physo138378.1;Parent=Physo138378;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 387996 389372 . + . ID=Physo138379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620115;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 387996 389372 . + . ID=Physo138379;Parent=Physo138379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 387996 388022 . + 0 ID=Physo138379;Parent=Physo138379;rank=1 scaffold_62 . exon 387996 388022 . + . ID=Physo138379.1;Parent=Physo138379;constitutive=1;rank=1 scaffold_62 . CDS 388428 388502 . + 0 ID=Physo138379;Parent=Physo138379;rank=2 scaffold_62 . exon 388428 388502 . + . ID=Physo138379.2;Parent=Physo138379;constitutive=1;rank=2 scaffold_62 . CDS 388542 388776 . + 0 ID=Physo138379;Parent=Physo138379;rank=3 scaffold_62 . exon 388542 388776 . + . ID=Physo138379.3;Parent=Physo138379;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_62 . CDS 388840 389372 . + 0 ID=Physo138379;Parent=Physo138379;rank=4 scaffold_62 . exon 388840 389372 . + . ID=Physo138379.4;Parent=Physo138379;constitutive=1;ensembl_phase=1;rank=4 scaffold_62 . exon 380485 381014 . + . ID=Physo157822.3;Parent=Physo157822;constitutive=1;ensembl_phase=1;rank=3 scaffold_62 . exon 381079 381164 . + . ID=Physo157822.4;Parent=Physo157822;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_62 . exon 381236 381603 . + . ID=Physo157822.5;Parent=Physo157822;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_62 . exon 381709 381761 . + . ID=Physo157822.6;Parent=Physo157822;constitutive=1;ensembl_phase=1;rank=6 scaffold_62 . biological_region 395645 395650 0.999 + . logic_name=eponine scaffold_62 . biological_region 395677 395680 0.999 - . logic_name=eponine scaffold_62 . biological_region 398081 398089 0.999 - . logic_name=eponine scaffold_62 ensembl protein_coding_gene 392420 392905 . + . ID=Physo138380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620116;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 392420 392905 . + . ID=Physo138380;Parent=Physo138380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 392420 392905 . + 0 ID=Physo138380;Parent=Physo138380;rank=1 scaffold_62 . exon 392420 392905 . + . ID=Physo138380.1;Parent=Physo138380;constitutive=1;rank=1 scaffold_62 ensembl protein_coding_gene 398795 399423 . + . ID=Physo138381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_620117;logic_name=jgi_physo1_1 scaffold_62 ensembl transcript 398795 399423 . + . ID=Physo138381;Parent=Physo138381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_62 . CDS 398795 398819 . + 0 ID=Physo138381;Parent=Physo138381;rank=1 scaffold_62 . exon 398795 398819 . + . ID=Physo138381.1;Parent=Physo138381;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_62 . CDS 398875 399116 . + 0 ID=Physo138381;Parent=Physo138381;rank=2 scaffold_62 . exon 398875 399116 . + . ID=Physo138381.2;Parent=Physo138381;constitutive=1;ensembl_phase=1;rank=2 scaffold_62 . CDS 399146 399232 . + 0 ID=Physo138381;Parent=Physo138381;rank=3 scaffold_62 . exon 399146 399232 . + . ID=Physo138381.3;Parent=Physo138381;constitutive=1;rank=3 scaffold_62 . CDS 399361 399423 . + 0 ID=Physo138381;Parent=Physo138381;rank=4 scaffold_62 . repeat_region 402787 402807 . ? . description=dust scaffold_62 . repeat_region 402787 402807 . ? . description=trf scaffold_62 . repeat_region 403311 428080 . ? . description=dust scaffold_62 . exon 399361 399423 . + . ID=Physo138381.4;Parent=Physo138381;constitutive=1;rank=4 scaffold_62 . repeat_region 403311 428080 . ? . description=dust scaffold_62 . repeat_region 428081 429262 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_61 1 429344 scaffold_61 . biological_region 6641 6644 0.999 - . logic_name=eponine scaffold_61 . biological_region 9519 9524 0.999 - . logic_name=eponine scaffold_61 . biological_region 9845 9847 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 9246 10601 . + . ID=Physo109111;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610001;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 9246 10601 . + . ID=Physo109111;Parent=Physo109111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 9246 10601 . + 0 ID=Physo109111;Parent=Physo109111;rank=1 scaffold_61 . exon 9246 10601 . + . ID=Physo109111.1;Parent=Physo109111;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 249 1345 . + . ID=Physo138167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610001;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 249 1345 . + . ID=Physo138167;Parent=Physo138167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 249 1184 . + 0 ID=Physo138167;Parent=Physo138167;rank=1 scaffold_61 . exon 249 1184 . + . ID=Physo138167.1;Parent=Physo138167;constitutive=1;rank=1 scaffold_61 . CDS 1277 1345 . + 0 ID=Physo138167;Parent=Physo138167;rank=2 scaffold_61 . exon 1277 1345 . + . ID=Physo138167.2;Parent=Physo138167;constitutive=1;rank=2 scaffold_61 ensembl protein_coding_gene 5954 8425 . - . ID=Physo138168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610002;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 5954 8425 . - . ID=Physo138168;Parent=Physo138168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 5954 6225 . - 0 ID=Physo138168;Parent=Physo138168;rank=8 scaffold_61 . exon 5954 6225 . - . ID=Physo138168.8;Parent=Physo138168;constitutive=1;ensembl_phase=1;rank=8 scaffold_61 . CDS 6302 6361 . - 0 ID=Physo138168;Parent=Physo138168;rank=7 scaffold_61 . exon 6302 6361 . - . ID=Physo138168.7;Parent=Physo138168;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_61 . CDS 6437 6804 . - 0 ID=Physo138168;Parent=Physo138168;rank=6 scaffold_61 . exon 6437 6804 . - . ID=Physo138168.6;Parent=Physo138168;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_61 . CDS 6931 7217 . - 0 ID=Physo138168;Parent=Physo138168;rank=5 scaffold_61 . exon 6931 7217 . - . ID=Physo138168.5;Parent=Physo138168;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_61 . CDS 7299 7684 . - 0 ID=Physo138168;Parent=Physo138168;rank=4 scaffold_61 . exon 7299 7684 . - . ID=Physo138168.4;Parent=Physo138168;constitutive=1;ensembl_phase=1;rank=4 scaffold_61 . CDS 7756 7918 . - 0 ID=Physo138168;Parent=Physo138168;rank=3 scaffold_61 . exon 7756 7918 . - . ID=Physo138168.3;Parent=Physo138168;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_61 . CDS 7976 8122 . - 0 ID=Physo138168;Parent=Physo138168;rank=2 scaffold_61 . exon 7976 8122 . - . ID=Physo138168.2;Parent=Physo138168;constitutive=1;rank=2 scaffold_61 . CDS 8174 8425 . - 0 ID=Physo138168;Parent=Physo138168;rank=1 scaffold_61 . exon 8174 8425 . - . ID=Physo138168.1;Parent=Physo138168;constitutive=1;rank=1 scaffold_61 . repeat_region 18368 18376 . ? . description=dust scaffold_61 . repeat_region 19354 19373 . ? . description=trf scaffold_61 ensembl protein_coding_gene 10855 12655 . - . ID=Physo138170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610004;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 10855 12655 . - . ID=Physo138170;Parent=Physo138170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 10855 11229 . - 0 ID=Physo138170;Parent=Physo138170;rank=4 scaffold_61 . exon 10855 11229 . - . ID=Physo138170.4;Parent=Physo138170;constitutive=1;rank=4 scaffold_61 . CDS 11297 11788 . - 0 ID=Physo138170;Parent=Physo138170;rank=3 scaffold_61 . exon 11297 11788 . - . ID=Physo138170.3;Parent=Physo138170;constitutive=1;rank=3 scaffold_61 . CDS 11860 12255 . - 0 ID=Physo138170;Parent=Physo138170;rank=2 scaffold_61 . exon 11860 12255 . - . ID=Physo138170.2;Parent=Physo138170;constitutive=1;rank=2 scaffold_61 . CDS 12320 12655 . - 0 ID=Physo138170;Parent=Physo138170;rank=1 scaffold_61 . exon 12320 12655 . - . ID=Physo138170.1;Parent=Physo138170;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 16835 22696 . - . ID=Physo138171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610005;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 16835 22696 . - . ID=Physo138171;Parent=Physo138171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 16835 17301 . - 0 ID=Physo138171;Parent=Physo138171;rank=11 scaffold_61 . exon 16835 17301 . - . ID=Physo138171.11;Parent=Physo138171;constitutive=1;ensembl_phase=1;rank=11 scaffold_61 . CDS 17602 17724 . - 0 ID=Physo138171;Parent=Physo138171;rank=10 scaffold_61 . exon 17602 17724 . - . ID=Physo138171.10;Parent=Physo138171;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_61 . CDS 17830 18308 . - 0 ID=Physo138171;Parent=Physo138171;rank=9 scaffold_61 . exon 17830 18308 . - . ID=Physo138171.9;Parent=Physo138171;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_61 . CDS 18383 18507 . - 0 ID=Physo138171;Parent=Physo138171;rank=8 scaffold_61 . exon 18383 18507 . - . ID=Physo138171.8;Parent=Physo138171;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_61 . CDS 18614 18738 . - 0 ID=Physo138171;Parent=Physo138171;rank=7 scaffold_61 . exon 18614 18738 . - . ID=Physo138171.7;Parent=Physo138171;constitutive=1;ensembl_phase=1;rank=7 scaffold_61 . CDS 18815 18879 . - 0 ID=Physo138171;Parent=Physo138171;rank=6 scaffold_61 . exon 18815 18879 . - . ID=Physo138171.6;Parent=Physo138171;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_61 . CDS 18906 19073 . - 0 ID=Physo138171;Parent=Physo138171;rank=5 scaffold_61 . exon 18906 19073 . - . ID=Physo138171.5;Parent=Physo138171;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_61 . CDS 19282 19453 . - 0 ID=Physo138171;Parent=Physo138171;rank=4 scaffold_61 . exon 19282 19453 . - . ID=Physo138171.4;Parent=Physo138171;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_61 . CDS 19765 20407 . - 0 ID=Physo138171;Parent=Physo138171;rank=3 scaffold_61 . exon 19765 20407 . - . ID=Physo138171.3;Parent=Physo138171;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_61 . CDS 21008 21180 . - 0 ID=Physo138171;Parent=Physo138171;rank=2 scaffold_61 . CDS 21592 22696 . - 0 ID=Physo138171;Parent=Physo138171;rank=1 scaffold_61 . exon 21008 21180 . - . ID=Physo138171.2;Parent=Physo138171;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . exon 21592 22696 . - . ID=Physo138171.1;Parent=Physo138171;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . biological_region 30371 30373 0.999 - . logic_name=eponine scaffold_61 . repeat_region 32631 32645 . ? . description=dust scaffold_61 . repeat_region 33389 33396 . ? . description=dust scaffold_61 . repeat_region 38971 39033 . + . description=GypsyPi-1c_I-int scaffold_61 . biological_region 39359 39361 0.999 + . logic_name=eponine scaffold_61 . biological_region 39505 39506 0.999 + . logic_name=eponine scaffold_61 ensembl protein_coding_gene 34064 34728 . - . ID=Physo138172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610006;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 34064 34728 . - . ID=Physo138172;Parent=Physo138172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 34064 34191 . - 0 ID=Physo138172;Parent=Physo138172;rank=3 scaffold_61 . exon 34064 34191 . - . ID=Physo138172.3;Parent=Physo138172;constitutive=1;ensembl_phase=1;rank=3 scaffold_61 . CDS 34285 34415 . - 0 ID=Physo138172;Parent=Physo138172;rank=2 scaffold_61 . exon 34285 34415 . - . ID=Physo138172.2;Parent=Physo138172;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 34673 34728 . - 0 ID=Physo138172;Parent=Physo138172;rank=1 scaffold_61 . exon 34673 34728 . - . ID=Physo138172.1;Parent=Physo138172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . repeat_region 43585 43613 . ? . description=trf scaffold_61 . repeat_region 49084 49132 . ? . description=trf scaffold_61 ensembl protein_coding_gene 40434 41534 . + . ID=Physo138173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610007;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 40434 41534 . + . ID=Physo138173;Parent=Physo138173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 40434 40913 . + 0 ID=Physo138173;Parent=Physo138173;rank=1 scaffold_61 . exon 40434 40913 . + . ID=Physo138173.1;Parent=Physo138173;constitutive=1;rank=1 scaffold_61 . CDS 40987 41156 . + 0 ID=Physo138173;Parent=Physo138173;rank=2 scaffold_61 . exon 40987 41156 . + . ID=Physo138173.2;Parent=Physo138173;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 41229 41366 . + 0 ID=Physo138173;Parent=Physo138173;rank=3 scaffold_61 . exon 41229 41366 . + . ID=Physo138173.3;Parent=Physo138173;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_61 . CDS 41522 41534 . + 0 ID=Physo138173;Parent=Physo138173;rank=4 scaffold_61 . exon 41522 41534 . + . ID=Physo138173.4;Parent=Physo138173;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 ensembl protein_coding_gene 42955 43611 . + . ID=Physo138174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610008;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 42955 43611 . + . ID=Physo138174;Parent=Physo138174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 42955 43090 . + 0 ID=Physo138174;Parent=Physo138174;rank=1 scaffold_61 . exon 42955 43090 . + . ID=Physo138174.1;Parent=Physo138174;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 43280 43611 . + 0 ID=Physo138174;Parent=Physo138174;rank=2 scaffold_61 . exon 43280 43611 . + . ID=Physo138174.2;Parent=Physo138174;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . biological_region 53023 53025 0.999 - . logic_name=eponine scaffold_61 . biological_region 53934 53935 0.999 - . logic_name=eponine scaffold_61 . repeat_region 57017 57028 . ? . description=dust scaffold_61 . biological_region 58943 58946 0.999 + . logic_name=eponine scaffold_61 . biological_region 58994 58996 0.999 - . logic_name=eponine scaffold_61 . repeat_region 59842 59898 . ? . description=dust scaffold_61 . repeat_region 63149 63329 . + . description=Gypsy-1-I_PI-int scaffold_61 . repeat_region 70688 70695 . ? . description=dust scaffold_61 . repeat_region 70985 70995 . ? . description=dust scaffold_61 . repeat_region 73581 73589 . ? . description=dust scaffold_61 . biological_region 73619 73625 0.999 + . logic_name=eponine scaffold_61 . repeat_region 73977 73991 . ? . description=dust scaffold_61 . biological_region 78406 78408 0.999 + . logic_name=eponine scaffold_61 ensembl protein_coding_gene 75500 77188 . + . ID=Physo138175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610009;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 75500 77188 . + . ID=Physo138175;Parent=Physo138175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 75500 75631 . + 0 ID=Physo138175;Parent=Physo138175;rank=1 scaffold_61 . exon 75500 75631 . + . ID=Physo138175.1;Parent=Physo138175;constitutive=1;rank=1 scaffold_61 . CDS 75818 76164 . + 0 ID=Physo138175;Parent=Physo138175;rank=2 scaffold_61 . exon 75818 76164 . + . ID=Physo138175.2;Parent=Physo138175;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 76256 76421 . + 0 ID=Physo138175;Parent=Physo138175;rank=3 scaffold_61 . exon 76256 76421 . + . ID=Physo138175.3;Parent=Physo138175;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 . CDS 76498 76850 . + 0 ID=Physo138175;Parent=Physo138175;rank=4 scaffold_61 . exon 76498 76850 . + . ID=Physo138175.4;Parent=Physo138175;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_61 . CDS 76936 76966 . + 0 ID=Physo138175;Parent=Physo138175;rank=5 scaffold_61 . exon 76936 76966 . + . ID=Physo138175.5;Parent=Physo138175;constitutive=1;ensembl_phase=2;rank=5 scaffold_61 . CDS 77049 77186 . + 0 ID=Physo138175;Parent=Physo138175;rank=6 scaffold_61 . exon 77049 77188 . + . ID=Physo138175.6;Parent=Physo138175;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_61 ensembl protein_coding_gene 77467 79287 . - . ID=Physo138176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610010;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 77467 79287 . - . ID=Physo138176;Parent=Physo138176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 77467 79287 . - . ID=Physo138176.1;Parent=Physo138176;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_61 . CDS 77620 79284 . - 0 ID=Physo138176;Parent=Physo138176;rank=1 scaffold_61 ensembl protein_coding_gene 79938 81231 . - . ID=Physo109112;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610002;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 79938 81231 . - . ID=Physo109112;Parent=Physo109112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 79938 81231 . - . ID=Physo109112.1;Parent=Physo109112;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_61 . CDS 79939 81231 . - 0 ID=Physo109112;Parent=Physo109112;rank=1 scaffold_61 ensembl protein_coding_gene 81541 83023 . + . ID=Physo109113;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610003;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 81541 83023 . + . ID=Physo109113;Parent=Physo109113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 81541 82942 . + . ID=Physo109113.1;Parent=Physo109113;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_61 . CDS 81636 82942 . + 0 ID=Physo109113;Parent=Physo109113;rank=1 scaffold_61 . CDS 82984 83023 . + 0 ID=Physo109113;Parent=Physo109113;rank=2 scaffold_61 . exon 82984 83023 . + . ID=Physo109113.2;Parent=Physo109113;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 ensembl protein_coding_gene 83399 83928 . + . ID=Physo138179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610013;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 83399 83928 . + . ID=Physo138179;Parent=Physo138179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 83399 83523 . + 0 ID=Physo138179;Parent=Physo138179;rank=1 scaffold_61 . exon 83399 83523 . + . ID=Physo138179.1;Parent=Physo138179;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 83712 83928 . + 0 ID=Physo138179;Parent=Physo138179;rank=2 scaffold_61 . exon 83712 83928 . + . ID=Physo138179.2;Parent=Physo138179;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 ensembl protein_coding_gene 86186 90152 . + . ID=Physo138180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610014;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 86186 90152 . + . ID=Physo138180;Parent=Physo138180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 86186 86236 . + 0 ID=Physo138180;Parent=Physo138180;rank=1 scaffold_61 . exon 86186 86236 . + . ID=Physo138180.1;Parent=Physo138180;constitutive=1;rank=1 scaffold_61 . CDS 86355 90152 . + 0 ID=Physo138180;Parent=Physo138180;rank=2 scaffold_61 . exon 86355 90152 . + . ID=Physo138180.2;Parent=Physo138180;constitutive=1;rank=2 scaffold_61 . biological_region 89868 89872 0.999 - . logic_name=eponine scaffold_61 . repeat_region 90680 90687 . ? . description=dust scaffold_61 . biological_region 92477 92481 0.999 + . logic_name=eponine scaffold_61 . biological_region 92744 92745 0.999 - . logic_name=eponine scaffold_61 . biological_region 92901 92904 0.999 + . logic_name=eponine scaffold_61 . biological_region 93431 93432 0.999 - . logic_name=eponine scaffold_61 . repeat_region 93843 93862 . ? . description=trf scaffold_61 . biological_region 96088 96093 0.999 + . logic_name=eponine scaffold_61 . biological_region 96160 96164 0.999 - . logic_name=eponine scaffold_61 . biological_region 96277 96279 0.999 + . logic_name=eponine scaffold_61 . biological_region 96295 96295 0.999 - . logic_name=eponine scaffold_61 . biological_region 96380 96380 0.999 + . logic_name=eponine scaffold_61 . biological_region 96392 96395 0.999 - . logic_name=eponine scaffold_61 . biological_region 96482 96483 0.999 + . logic_name=eponine scaffold_61 . repeat_region 96957 97006 . ? . description=dust scaffold_61 . biological_region 97052 97055 0.999 + . logic_name=eponine scaffold_61 . repeat_region 97227 97246 . ? . description=trf scaffold_61 . repeat_region 97708 97716 . ? . description=dust scaffold_61 . repeat_region 97887 97902 . ? . description=dust scaffold_61 . repeat_region 98092 98112 . ? . description=dust scaffold_61 . biological_region 98396 98401 0.999 + . logic_name=eponine scaffold_61 . biological_region 98468 98472 0.999 - . logic_name=eponine scaffold_61 . biological_region 98585 98587 0.999 + . logic_name=eponine scaffold_61 . biological_region 98603 98603 0.999 - . logic_name=eponine scaffold_61 . biological_region 98688 98688 0.999 + . logic_name=eponine scaffold_61 . biological_region 98700 98703 0.999 - . logic_name=eponine scaffold_61 . biological_region 98789 98793 0.999 + . logic_name=eponine scaffold_61 . repeat_region 99016 101097 . ? . description=dust scaffold_61 ensembl protein_coding_gene 95897 96956 . - . ID=Physo119273;biotype=protein_coding;external_name=estExt_Genewise1.C_610078;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 95897 96956 . - . ID=Physo119273;Parent=Physo119273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 95897 96850 . - 0 ID=Physo119273;Parent=Physo119273;rank=1 scaffold_61 . exon 95897 96956 . - . ID=Physo119273.1;Parent=Physo119273;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 ensembl protein_coding_gene 91927 93018 . - . ID=Physo138182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610016;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 91927 93018 . - . ID=Physo138182;Parent=Physo138182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 91927 93018 . - 0 ID=Physo138182;Parent=Physo138182;rank=1 scaffold_61 . exon 91927 93018 . - . ID=Physo138182.1;Parent=Physo138182;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 94012 95710 . - . ID=Physo138183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610017;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 94012 95710 . - . ID=Physo138183;Parent=Physo138183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 94012 94989 . - 0 ID=Physo138183;Parent=Physo138183;rank=4 scaffold_61 . exon 94012 94989 . - . ID=Physo138183.4;Parent=Physo138183;constitutive=1;rank=4 scaffold_61 . CDS 95048 95278 . - 0 ID=Physo138183;Parent=Physo138183;rank=3 scaffold_61 . exon 95048 95278 . - . ID=Physo138183.3;Parent=Physo138183;constitutive=1;rank=3 scaffold_61 . CDS 95379 95507 . - 0 ID=Physo138183;Parent=Physo138183;rank=2 scaffold_61 . exon 95379 95507 . - . ID=Physo138183.2;Parent=Physo138183;constitutive=1;rank=2 scaffold_61 . CDS 95577 95621 . - 0 ID=Physo138183;Parent=Physo138183;rank=1 scaffold_61 . exon 95577 95710 . - . ID=Physo138183.1;Parent=Physo138183;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 ensembl protein_coding_gene 98202 99015 . - . ID=Physo138185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610019;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 98202 99015 . - . ID=Physo138185;Parent=Physo138185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 98202 98957 . - 0 ID=Physo138185;Parent=Physo138185;rank=1 scaffold_61 . exon 98202 99015 . - . ID=Physo138185.1;Parent=Physo138185;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 ensembl protein_coding_gene 90420 91571 . + . ID=Physo157776;biotype=protein_coding;external_name=C_scaffold_61000003;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 90420 91571 . + . ID=Physo157776;Parent=Physo157776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 90420 90513 . + 0 ID=Physo157776;Parent=Physo157776;rank=1 scaffold_61 . exon 90420 90513 . + . ID=Physo157776.1;Parent=Physo157776;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 90588 90646 . + 0 ID=Physo157776;Parent=Physo157776;rank=2 scaffold_61 . exon 90588 90646 . + . ID=Physo157776.2;Parent=Physo157776;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 90724 90906 . + 0 ID=Physo157776;Parent=Physo157776;rank=3 scaffold_61 . exon 90724 90906 . + . ID=Physo157776.3;Parent=Physo157776;constitutive=1;rank=3 scaffold_61 . CDS 90979 91016 . + 0 ID=Physo157776;Parent=Physo157776;rank=4 scaffold_61 . exon 90979 91016 . + . ID=Physo157776.4;Parent=Physo157776;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_61 . CDS 91084 91139 . + 0 ID=Physo157776;Parent=Physo157776;rank=5 scaffold_61 . exon 91084 91139 . + . ID=Physo157776.5;Parent=Physo157776;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_61 . CDS 91211 91272 . + 0 ID=Physo157776;Parent=Physo157776;rank=6 scaffold_61 . exon 91211 91272 . + . ID=Physo157776.6;Parent=Physo157776;constitutive=1;ensembl_phase=1;rank=6 scaffold_61 . CDS 91350 91571 . + 0 ID=Physo157776;Parent=Physo157776;rank=7 scaffold_61 . exon 91350 91571 . + . ID=Physo157776.7;Parent=Physo157776;constitutive=1;rank=7 scaffold_61 ensembl protein_coding_gene 101098 102287 . + . ID=Physo138186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610020;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 101098 102287 . + . ID=Physo138186;Parent=Physo138186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 101098 102287 . + . ID=Physo138186.1;Parent=Physo138186;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 . CDS 101331 102287 . + 0 ID=Physo138186;Parent=Physo138186;rank=1 scaffold_61 ensembl protein_coding_gene 102536 104122 . + . ID=Physo138187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610021;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 102536 104122 . + . ID=Physo138187;Parent=Physo138187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 102536 104122 . + 0 ID=Physo138187;Parent=Physo138187;rank=1 scaffold_61 . exon 102536 104122 . + . ID=Physo138187.1;Parent=Physo138187;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 104374 105569 . + . ID=Physo157779;biotype=protein_coding;external_name=C_scaffold_61000006;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 104374 105569 . + . ID=Physo157779;Parent=Physo157779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 104374 104522 . + 0 ID=Physo157779;Parent=Physo157779;rank=1 scaffold_61 . exon 104374 104522 . + . ID=Physo157779.1;Parent=Physo157779;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 104611 104743 . + 0 ID=Physo157779;Parent=Physo157779;rank=2 scaffold_61 . exon 104611 104743 . + . ID=Physo157779.2;Parent=Physo157779;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 104826 104977 . + 0 ID=Physo157779;Parent=Physo157779;rank=3 scaffold_61 . exon 104826 104977 . + . ID=Physo157779.3;Parent=Physo157779;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . CDS 105062 105569 . + 0 ID=Physo157779;Parent=Physo157779;rank=4 scaffold_61 . exon 105062 105569 . + . ID=Physo157779.4;Parent=Physo157779;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 ensembl protein_coding_gene 105860 107511 . + . ID=Physo157780;biotype=protein_coding;external_name=C_scaffold_61000007;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 105860 107511 . + . ID=Physo157780;Parent=Physo157780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 105860 105940 . + 0 ID=Physo157780;Parent=Physo157780;rank=1 scaffold_61 . exon 105860 105940 . + . ID=Physo157780.1;Parent=Physo157780;constitutive=1;rank=1 scaffold_61 . CDS 106033 106121 . + 0 ID=Physo157780;Parent=Physo157780;rank=2 scaffold_61 . exon 106033 106121 . + . ID=Physo157780.2;Parent=Physo157780;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 106227 106295 . + 0 ID=Physo157780;Parent=Physo157780;rank=3 scaffold_61 . exon 106227 106295 . + . ID=Physo157780.3;Parent=Physo157780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_61 . CDS 106373 106457 . + 0 ID=Physo157780;Parent=Physo157780;rank=4 scaffold_61 . exon 106373 106457 . + . ID=Physo157780.4;Parent=Physo157780;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 . CDS 106546 106645 . + 0 ID=Physo157780;Parent=Physo157780;rank=5 scaffold_61 . exon 106546 106645 . + . ID=Physo157780.5;Parent=Physo157780;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_61 . CDS 106747 106838 . + 0 ID=Physo157780;Parent=Physo157780;rank=6 scaffold_61 . exon 106747 106838 . + . ID=Physo157780.6;Parent=Physo157780;constitutive=1;ensembl_phase=1;rank=6 scaffold_61 . CDS 106941 107080 . + 0 ID=Physo157780;Parent=Physo157780;rank=7 scaffold_61 . exon 106941 107080 . + . ID=Physo157780.7;Parent=Physo157780;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_61 . CDS 107157 107277 . + 0 ID=Physo157780;Parent=Physo157780;rank=8 scaffold_61 . exon 107157 107277 . + . ID=Physo157780.8;Parent=Physo157780;constitutive=1;ensembl_phase=2;rank=8 scaffold_61 . CDS 107348 107404 . + 0 ID=Physo157780;Parent=Physo157780;rank=9 scaffold_61 . exon 107348 107404 . + . ID=Physo157780.9;Parent=Physo157780;constitutive=1;rank=9 scaffold_61 . CDS 107470 107511 . + 0 ID=Physo157780;Parent=Physo157780;rank=10 scaffold_61 . exon 107470 107511 . + . ID=Physo157780.10;Parent=Physo157780;constitutive=1;rank=10 scaffold_61 ensembl protein_coding_gene 107828 108554 . + . ID=Physo157781;biotype=protein_coding;external_name=C_scaffold_61000008;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 107828 108554 . + . ID=Physo157781;Parent=Physo157781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 107828 107930 . + 0 ID=Physo157781;Parent=Physo157781;rank=1 scaffold_61 . exon 107828 107930 . + . ID=Physo157781.1;Parent=Physo157781;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 107993 108060 . + 0 ID=Physo157781;Parent=Physo157781;rank=2 scaffold_61 . exon 107993 108060 . + . ID=Physo157781.2;Parent=Physo157781;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 108135 108554 . + 0 ID=Physo157781;Parent=Physo157781;rank=3 scaffold_61 . exon 108135 108554 . + . ID=Physo157781.3;Parent=Physo157781;constitutive=1;rank=3 scaffold_61 ensembl protein_coding_gene 109085 109790 . + . ID=Physo157782;biotype=protein_coding;external_name=C_scaffold_61000009;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 109085 109790 . + . ID=Physo157782;Parent=Physo157782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 109085 109184 . + 0 ID=Physo157782;Parent=Physo157782;rank=1 scaffold_61 . exon 109085 109184 . + . ID=Physo157782.1;Parent=Physo157782;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 109247 109314 . + 0 ID=Physo157782;Parent=Physo157782;rank=2 scaffold_61 . exon 109247 109314 . + . ID=Physo157782.2;Parent=Physo157782;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 109371 109790 . + 0 ID=Physo157782;Parent=Physo157782;rank=3 scaffold_61 . exon 109371 109790 . + . ID=Physo157782.3;Parent=Physo157782;constitutive=1;rank=3 scaffold_61 . repeat_region 111729 111742 . ? . description=dust scaffold_61 . repeat_region 111773 111781 . ? . description=dust scaffold_61 . biological_region 113065 113066 0.999 + . logic_name=eponine scaffold_61 . biological_region 116137 116140 0.999 + . logic_name=eponine scaffold_61 . biological_region 116201 116204 0.999 + . logic_name=eponine scaffold_61 . biological_region 116210 116211 0.999 - . logic_name=eponine scaffold_61 . biological_region 116263 116269 0.999 + . logic_name=eponine scaffold_61 . biological_region 116270 116271 0.999 - . logic_name=eponine scaffold_61 . biological_region 116453 116459 0.999 - . logic_name=eponine scaffold_61 . biological_region 116462 116463 0.999 + . logic_name=eponine scaffold_61 . biological_region 116485 116488 0.999 + . logic_name=eponine scaffold_61 . biological_region 116509 116513 0.999 + . logic_name=eponine scaffold_61 . biological_region 116528 116531 0.999 + . logic_name=eponine scaffold_61 . biological_region 116588 116589 0.999 + . logic_name=eponine scaffold_61 . biological_region 116638 116640 0.999 - . logic_name=eponine scaffold_61 . biological_region 116647 116648 0.999 - . logic_name=eponine scaffold_61 . biological_region 117189 117196 0.999 + . logic_name=eponine scaffold_61 . repeat_region 117515 117535 . ? . description=trf scaffold_61 . biological_region 118309 118311 0.999 + . logic_name=eponine scaffold_61 . biological_region 118408 118413 0.999 - . logic_name=eponine scaffold_61 . biological_region 118722 118728 0.999 - . logic_name=eponine scaffold_61 . biological_region 118792 118795 0.999 - . logic_name=eponine scaffold_61 . biological_region 118800 118803 0.999 + . logic_name=eponine scaffold_61 ensembl protein_coding_gene 109895 111630 . - . ID=Physo138192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610026;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 109895 111630 . - . ID=Physo138192;Parent=Physo138192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 109895 109992 . - 0 ID=Physo138192;Parent=Physo138192;rank=5 scaffold_61 . exon 109895 109992 . - . ID=Physo138192.5;Parent=Physo138192;constitutive=1;ensembl_phase=1;rank=5 scaffold_61 . CDS 110066 110654 . - 0 ID=Physo138192;Parent=Physo138192;rank=4 scaffold_61 . exon 110066 110654 . - . ID=Physo138192.4;Parent=Physo138192;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_61 . CDS 110725 111225 . - 0 ID=Physo138192;Parent=Physo138192;rank=3 scaffold_61 . exon 110725 111225 . - . ID=Physo138192.3;Parent=Physo138192;constitutive=1;rank=3 scaffold_61 . CDS 111298 111354 . - 0 ID=Physo138192;Parent=Physo138192;rank=2 scaffold_61 . exon 111298 111354 . - . ID=Physo138192.2;Parent=Physo138192;constitutive=1;rank=2 scaffold_61 . CDS 111430 111630 . - 0 ID=Physo138192;Parent=Physo138192;rank=1 scaffold_61 . exon 111430 111630 . - . ID=Physo138192.1;Parent=Physo138192;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 112921 114498 . + . ID=Physo138193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610027;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 112921 114498 . + . ID=Physo138193;Parent=Physo138193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 112921 114498 . + 0 ID=Physo138193;Parent=Physo138193;rank=1 scaffold_61 . exon 112921 114498 . + . ID=Physo138193.1;Parent=Physo138193;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 115978 117483 . + . ID=Physo138194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610028;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 115978 117483 . + . ID=Physo138194;Parent=Physo138194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 115978 117483 . + . ID=Physo138194.1;Parent=Physo138194;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 . CDS 116065 117483 . + 0 ID=Physo138194;Parent=Physo138194;rank=1 scaffold_61 ensembl protein_coding_gene 118279 119724 . + . ID=Physo138195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610029;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 118279 119724 . + . ID=Physo138195;Parent=Physo138195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 118279 119724 . + 0 ID=Physo138195;Parent=Physo138195;rank=1 scaffold_61 . exon 118279 119724 . + . ID=Physo138195.1;Parent=Physo138195;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 124795 126583 . - . ID=Physo109115;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610005;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 124795 126583 . - . ID=Physo109115;Parent=Physo109115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 124795 126583 . - . ID=Physo109115.1;Parent=Physo109115;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_61 . CDS 124864 126414 . - 0 ID=Physo109115;Parent=Physo109115;rank=1 scaffold_61 ensembl protein_coding_gene 119831 121049 . - . ID=Physo138196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610030;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 119831 121049 . - . ID=Physo138196;Parent=Physo138196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 119831 120311 . - . ID=Physo138196.4;Parent=Physo138196;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_61 . CDS 119990 120311 . - 0 ID=Physo138196;Parent=Physo138196;rank=4 scaffold_61 . CDS 120392 120526 . - 0 ID=Physo138196;Parent=Physo138196;rank=3 scaffold_61 . exon 120392 120526 . - . ID=Physo138196.3;Parent=Physo138196;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_61 . CDS 120604 120730 . - 0 ID=Physo138196;Parent=Physo138196;rank=2 scaffold_61 . exon 120604 120730 . - . ID=Physo138196.2;Parent=Physo138196;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_61 . CDS 120815 120974 . - 0 ID=Physo138196;Parent=Physo138196;rank=1 scaffold_61 . exon 120815 121049 . - . ID=Physo138196.1;Parent=Physo138196;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_61 ensembl protein_coding_gene 121275 122810 . - . ID=Physo138197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610031;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 121275 122810 . - . ID=Physo138197;Parent=Physo138197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 121275 121424 . - 0 ID=Physo138197;Parent=Physo138197;rank=4 scaffold_61 . exon 121275 121424 . - . ID=Physo138197.4;Parent=Physo138197;constitutive=1;rank=4 scaffold_61 . CDS 121483 122164 . - 0 ID=Physo138197;Parent=Physo138197;rank=3 scaffold_61 . exon 121483 122164 . - . ID=Physo138197.3;Parent=Physo138197;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 . CDS 122221 122304 . - 0 ID=Physo138197;Parent=Physo138197;rank=2 scaffold_61 . exon 122221 122304 . - . ID=Physo138197.2;Parent=Physo138197;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_61 . CDS 122377 122810 . - 0 ID=Physo138197;Parent=Physo138197;rank=1 scaffold_61 . exon 122377 122810 . - . ID=Physo138197.1;Parent=Physo138197;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 ensembl protein_coding_gene 124006 124797 . + . ID=Physo138198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610032;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 124006 124797 . + . ID=Physo138198;Parent=Physo138198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 124006 124155 . + . ID=Physo138198.1;Parent=Physo138198;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 . CDS 124039 124155 . + 0 ID=Physo138198;Parent=Physo138198;rank=1 scaffold_61 . CDS 124264 124318 . + 0 ID=Physo138198;Parent=Physo138198;rank=2 scaffold_61 . exon 124264 124318 . + . ID=Physo138198.2;Parent=Physo138198;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_61 . CDS 124427 124593 . + 0 ID=Physo138198;Parent=Physo138198;rank=3 scaffold_61 . exon 124427 124797 . + . ID=Physo138198.3;Parent=Physo138198;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_61 ensembl protein_coding_gene 127448 128651 . - . ID=Physo138200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610034;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 127448 128651 . - . ID=Physo138200;Parent=Physo138200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 127448 128039 . - 0 ID=Physo138200;Parent=Physo138200;rank=3 scaffold_61 . exon 127448 128039 . - . ID=Physo138200.3;Parent=Physo138200;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 . CDS 128125 128460 . - 0 ID=Physo138200;Parent=Physo138200;rank=2 scaffold_61 . exon 128125 128460 . - . ID=Physo138200.2;Parent=Physo138200;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_61 . CDS 128545 128651 . - 0 ID=Physo138200;Parent=Physo138200;rank=1 scaffold_61 . exon 128545 128651 . - . ID=Physo138200.1;Parent=Physo138200;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 ensembl protein_coding_gene 129384 133701 . + . ID=Physo157785;biotype=protein_coding;description=Protein kinase 157785 isoform 1 [Source:UniProtKB/TrEMBL%3BAcc:F4ZVE1];external_name=C_scaffold_61000012;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 129384 133701 . + . ID=Physo157785;Parent=Physo157785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 129384 129596 . + 0 ID=Physo157785;Parent=Physo157785;rank=1 scaffold_61 . exon 129384 129596 . + . ID=Physo157785.1;Parent=Physo157785;constitutive=1;rank=1 scaffold_61 . CDS 129663 129834 . + 0 ID=Physo157785;Parent=Physo157785;rank=2 scaffold_61 . exon 129663 129834 . + . ID=Physo157785.2;Parent=Physo157785;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_61 . CDS 129965 130601 . + 0 ID=Physo157785;Parent=Physo157785;rank=3 scaffold_61 . CDS 130784 130885 . + 0 ID=Physo157785;Parent=Physo157785;rank=4 scaffold_61 . CDS 130975 131011 . + 0 ID=Physo157785;Parent=Physo157785;rank=5 scaffold_61 . CDS 131091 131300 . + 0 ID=Physo157785;Parent=Physo157785;rank=6 scaffold_61 . CDS 131373 131463 . + 0 ID=Physo157785;Parent=Physo157785;rank=7 scaffold_61 . CDS 131539 131646 . + 0 ID=Physo157785;Parent=Physo157785;rank=8 scaffold_61 . CDS 131728 132087 . + 0 ID=Physo157785;Parent=Physo157785;rank=9 scaffold_61 . CDS 132121 132201 . + 0 ID=Physo157785;Parent=Physo157785;rank=10 scaffold_61 . CDS 132596 132878 . + 0 ID=Physo157785;Parent=Physo157785;rank=11 scaffold_61 . CDS 132953 133010 . + 0 ID=Physo157785;Parent=Physo157785;rank=12 scaffold_61 . CDS 133079 133235 . + 0 ID=Physo157785;Parent=Physo157785;rank=13 scaffold_61 . CDS 133278 133549 . + 0 ID=Physo157785;Parent=Physo157785;rank=14 scaffold_61 . CDS 133627 133701 . + 0 ID=Physo157785;Parent=Physo157785;rank=15 scaffold_61 . biological_region 130073 130073 0.999 + . logic_name=eponine scaffold_61 . biological_region 130105 130108 0.999 + . logic_name=eponine scaffold_61 . repeat_region 130567 130613 . ? . description=dust scaffold_61 . repeat_region 130568 130601 . ? . description=trf scaffold_61 . biological_region 132071 132074 0.999 - . logic_name=eponine scaffold_61 . biological_region 134685 134686 0.999 + . logic_name=eponine scaffold_61 . repeat_region 134814 135439 . ? . description=trf scaffold_61 . repeat_region 135587 135623 . ? . description=trf scaffold_61 . biological_region 135809 135815 0.999 - . logic_name=eponine scaffold_61 . repeat_region 136046 136079 . ? . description=dust scaffold_61 . repeat_region 136046 136079 . ? . description=trf scaffold_61 . biological_region 136117 136119 0.999 - . logic_name=eponine scaffold_61 . biological_region 136361 136363 0.999 + . logic_name=eponine scaffold_61 . repeat_region 136794 136835 . ? . description=trf scaffold_61 . repeat_region 137695 137736 . ? . description=trf scaffold_61 . biological_region 138168 138170 0.999 - . logic_name=eponine scaffold_61 . biological_region 138412 138414 0.999 + . logic_name=eponine scaffold_61 . repeat_region 138451 138475 . ? . description=dust scaffold_61 . repeat_region 138451 138484 . ? . description=trf scaffold_61 . biological_region 138716 138722 0.999 + . logic_name=eponine scaffold_61 . repeat_region 138907 138943 . ? . description=trf scaffold_61 . repeat_region 139090 139409 . ? . description=trf scaffold_61 . biological_region 139543 139544 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 134241 137016 . - . ID=Physo138203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610037;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 134241 137016 . - . ID=Physo138203;Parent=Physo138203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 134241 135466 . - 0 ID=Physo138203;Parent=Physo138203;rank=3 scaffold_61 . exon 134241 135466 . - . ID=Physo138203.3;Parent=Physo138203;constitutive=1;ensembl_phase=1;rank=3 scaffold_61 . CDS 135496 136183 . - 0 ID=Physo138203;Parent=Physo138203;rank=2 scaffold_61 . exon 135496 136183 . - . ID=Physo138203.2;Parent=Physo138203;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_61 . CDS 136222 137016 . - 0 ID=Physo138203;Parent=Physo138203;rank=1 scaffold_61 . exon 136222 137016 . - . ID=Physo138203.1;Parent=Physo138203;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 137661 139981 . + . ID=Physo138204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610038;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 137661 139981 . + . ID=Physo138204;Parent=Physo138204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 137661 138308 . + 0 ID=Physo138204;Parent=Physo138204;rank=1 scaffold_61 . exon 137661 138308 . + . ID=Physo138204.1;Parent=Physo138204;constitutive=1;rank=1 scaffold_61 . CDS 138347 139981 . + 0 ID=Physo138204;Parent=Physo138204;rank=2 scaffold_61 . exon 138347 139981 . + . ID=Physo138204.2;Parent=Physo138204;constitutive=1;rank=2 scaffold_61 . exon 129965 130601 . + . ID=Physo157785.3;Parent=Physo157785;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_61 . exon 130784 130885 . + . ID=Physo157785.4;Parent=Physo157785;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_61 . exon 130975 131011 . + . ID=Physo157785.5;Parent=Physo157785;constitutive=1;ensembl_phase=2;rank=5 scaffold_61 . exon 131091 131300 . + . ID=Physo157785.6;Parent=Physo157785;constitutive=1;rank=6 scaffold_61 . exon 131373 131463 . + . ID=Physo157785.7;Parent=Physo157785;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_61 . exon 131539 131646 . + . ID=Physo157785.8;Parent=Physo157785;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_61 . exon 131728 132087 . + . ID=Physo157785.9;Parent=Physo157785;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_61 . exon 132121 132201 . + . ID=Physo157785.10;Parent=Physo157785;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_61 . exon 132596 132878 . + . ID=Physo157785.11;Parent=Physo157785;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_61 . exon 132953 133010 . + . ID=Physo157785.12;Parent=Physo157785;constitutive=1;ensembl_phase=2;rank=12 scaffold_61 . exon 133079 133235 . + . ID=Physo157785.13;Parent=Physo157785;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_61 . exon 133278 133549 . + . ID=Physo157785.14;Parent=Physo157785;constitutive=1;ensembl_phase=1;rank=14 scaffold_61 . exon 133627 133701 . + . ID=Physo157785.15;Parent=Physo157785;constitutive=1;rank=15 scaffold_61 ensembl protein_coding_gene 141334 142980 . + . ID=Physo138205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610039;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 141334 142980 . + . ID=Physo138205;Parent=Physo138205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 141334 142980 . + 0 ID=Physo138205;Parent=Physo138205;rank=1 scaffold_61 . exon 141334 142980 . + . ID=Physo138205.1;Parent=Physo138205;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 143302 148099 . - . ID=Physo138206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610040;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 143302 148099 . - . ID=Physo138206;Parent=Physo138206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 143302 147366 . - 0 ID=Physo138206;Parent=Physo138206;rank=4 scaffold_61 . exon 143302 147366 . - . ID=Physo138206.4;Parent=Physo138206;constitutive=1;rank=4 scaffold_61 . CDS 147469 147615 . - 0 ID=Physo138206;Parent=Physo138206;rank=3 scaffold_61 . exon 147469 147615 . - . ID=Physo138206.3;Parent=Physo138206;constitutive=1;rank=3 scaffold_61 . CDS 147737 147892 . - 0 ID=Physo138206;Parent=Physo138206;rank=2 scaffold_61 . exon 147737 147892 . - . ID=Physo138206.2;Parent=Physo138206;constitutive=1;rank=2 scaffold_61 . CDS 147966 147986 . - 0 ID=Physo138206;Parent=Physo138206;rank=1 scaffold_61 . exon 147966 148099 . - . ID=Physo138206.1;Parent=Physo138206;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 . biological_region 150028 150032 0.999 + . logic_name=eponine scaffold_61 . biological_region 150037 150037 0.999 - . logic_name=eponine scaffold_61 . biological_region 150204 150209 0.999 - . logic_name=eponine scaffold_61 . biological_region 150222 150225 0.999 - . logic_name=eponine scaffold_61 . biological_region 150418 150421 0.999 - . logic_name=eponine scaffold_61 . biological_region 151838 151843 0.999 + . logic_name=eponine scaffold_61 . biological_region 153433 153434 0.999 + . logic_name=eponine scaffold_61 . repeat_region 153762 153770 . ? . description=dust scaffold_61 . repeat_region 155995 156034 . ? . description=trf scaffold_61 . biological_region 156429 156432 0.999 - . logic_name=eponine scaffold_61 . biological_region 156551 156552 0.999 + . logic_name=eponine scaffold_61 . biological_region 156695 156696 0.999 - . logic_name=eponine scaffold_61 . biological_region 158786 158788 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 159562 160839 . - . ID=Physo109116;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610006;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 159562 160839 . - . ID=Physo109116;Parent=Physo109116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 159562 159784 . - . ID=Physo109116.5;Parent=Physo109116;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_61 . CDS 159685 159784 . - 0 ID=Physo109116;Parent=Physo109116;rank=5 scaffold_61 . CDS 159866 159903 . - 0 ID=Physo109116;Parent=Physo109116;rank=4 scaffold_61 . CDS 160053 160486 . - 0 ID=Physo109116;Parent=Physo109116;rank=3 scaffold_61 . CDS 160567 160726 . - 0 ID=Physo109116;Parent=Physo109116;rank=2 scaffold_61 . CDS 160807 160839 . - 0 ID=Physo109116;Parent=Physo109116;rank=1 scaffold_61 ensembl protein_coding_gene 155872 158070 . + . ID=Physo119303;biotype=protein_coding;external_name=estExt_Genewise1.C_610108;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 155872 158070 . + . ID=Physo119303;Parent=Physo119303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 155872 156551 . + 0 ID=Physo119303;Parent=Physo119303;rank=1 scaffold_61 . exon 155872 156551 . + . ID=Physo119303.1;Parent=Physo119303;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 156753 158070 . + 0 ID=Physo119303;Parent=Physo119303;rank=2 scaffold_61 . exon 156753 158070 . + . ID=Physo119303.2;Parent=Physo119303;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 ensembl protein_coding_gene 151027 153675 . + . ID=Physo138207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610041;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 151027 153675 . + . ID=Physo138207;Parent=Physo138207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 151027 153675 . + 0 ID=Physo138207;Parent=Physo138207;rank=1 scaffold_61 . exon 151027 153675 . + . ID=Physo138207.1;Parent=Physo138207;constitutive=1;rank=1 scaffold_61 . exon 159866 159903 . - . ID=Physo109116.4;Parent=Physo109116;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_61 . exon 160053 160486 . - . ID=Physo109116.3;Parent=Physo109116;constitutive=1;ensembl_phase=1;rank=3 scaffold_61 . exon 160567 160726 . - . ID=Physo109116.2;Parent=Physo109116;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_61 . exon 160807 160839 . - . ID=Physo109116.1;Parent=Physo109116;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 163088 164005 . - . ID=Physo109117;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610007;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 163088 164005 . - . ID=Physo109117;Parent=Physo109117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 163088 164005 . - 0 ID=Physo109117;Parent=Physo109117;rank=1 scaffold_61 . exon 163088 164005 . - . ID=Physo109117.1;Parent=Physo109117;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 164789 166126 . + . ID=Physo119319;biotype=protein_coding;external_name=estExt_Genewise1.C_610124;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 164789 166126 . + . ID=Physo119319;Parent=Physo119319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 164789 166126 . + 0 ID=Physo119319;Parent=Physo119319;rank=1 scaffold_61 . exon 164789 166126 . + . ID=Physo119319.1;Parent=Physo119319;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 161099 163001 . + . ID=Physo138210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610044;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 161099 163001 . + . ID=Physo138210;Parent=Physo138210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 161099 162955 . + 0 ID=Physo138210;Parent=Physo138210;rank=1 scaffold_61 . exon 161099 163001 . + . ID=Physo138210.1;Parent=Physo138210;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_61 ensembl protein_coding_gene 166507 168537 . - . ID=Physo138213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610047;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 166507 168537 . - . ID=Physo138213;Parent=Physo138213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 166507 168537 . - 0 ID=Physo138213;Parent=Physo138213;rank=1 scaffold_61 . exon 166507 168537 . - . ID=Physo138213.1;Parent=Physo138213;constitutive=1;rank=1 scaffold_61 . biological_region 171361 171363 0.999 + . logic_name=eponine scaffold_61 . biological_region 173162 173168 0.999 + . logic_name=eponine scaffold_61 . biological_region 174656 174661 0.999 + . logic_name=eponine scaffold_61 . biological_region 174832 174832 0.999 + . logic_name=eponine scaffold_61 . biological_region 175155 175158 0.999 + . logic_name=eponine scaffold_61 . biological_region 177051 177053 0.999 + . logic_name=eponine scaffold_61 . biological_region 178919 178924 0.999 + . logic_name=eponine scaffold_61 . biological_region 179049 179053 0.999 - . logic_name=eponine scaffold_61 . biological_region 179168 179170 0.999 + . logic_name=eponine scaffold_61 . biological_region 179238 179239 0.999 + . logic_name=eponine scaffold_61 . biological_region 179302 179306 0.999 + . logic_name=eponine scaffold_61 . biological_region 179332 179334 0.999 - . logic_name=eponine scaffold_61 . repeat_region 179367 179408 . ? . description=dust scaffold_61 . biological_region 179409 179413 0.999 - . logic_name=eponine scaffold_61 . biological_region 179484 179489 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 174073 175434 . + . ID=Physo119323;biotype=protein_coding;external_name=estExt_Genewise1.C_610128;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 174073 175434 . + . ID=Physo119323;Parent=Physo119323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 174073 175434 . + 0 ID=Physo119323;Parent=Physo119323;rank=1 scaffold_61 . exon 174073 175434 . + . ID=Physo119323.1;Parent=Physo119323;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 171486 173399 . - . ID=Physo138214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610048;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 171486 173399 . - . ID=Physo138214;Parent=Physo138214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 171486 171722 . - . ID=Physo138214.3;Parent=Physo138214;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_61 . CDS 171722 171722 . - 0 ID=Physo138214;Parent=Physo138214;rank=3 scaffold_61 . CDS 171844 172271 . - 0 ID=Physo138214;Parent=Physo138214;rank=2 scaffold_61 . exon 171844 172271 . - . ID=Physo138214.2;Parent=Physo138214;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 172315 172371 . - 0 ID=Physo138214;Parent=Physo138214;rank=1 scaffold_61 . exon 172315 173399 . - . ID=Physo138214.1;Parent=Physo138214;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 ensembl protein_coding_gene 176800 179454 . - . ID=Physo138216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610050;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 176800 179454 . - . ID=Physo138216;Parent=Physo138216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 176800 177370 . - 0 ID=Physo138216;Parent=Physo138216;rank=3 scaffold_61 . exon 176800 177370 . - . ID=Physo138216.3;Parent=Physo138216;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 . CDS 177499 177626 . - 0 ID=Physo138216;Parent=Physo138216;rank=2 scaffold_61 . exon 177499 177626 . - . ID=Physo138216.2;Parent=Physo138216;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 177703 179454 . - 0 ID=Physo138216;Parent=Physo138216;rank=1 scaffold_61 . exon 177703 179454 . - . ID=Physo138216.1;Parent=Physo138216;constitutive=1;rank=1 scaffold_61 . repeat_region 187042 189303 . + . description=GypsyPi-1c_I-int scaffold_61 . repeat_region 189395 189550 . ? . description=trf scaffold_61 . repeat_region 189656 189936 . + . description=GypsyPi-1c_I-int scaffold_61 ensembl protein_coding_gene 180529 182580 . + . ID=Physo138217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610051;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 180529 182580 . + . ID=Physo138217;Parent=Physo138217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 180529 182580 . + 0 ID=Physo138217;Parent=Physo138217;rank=1 scaffold_61 . exon 180529 182580 . + . ID=Physo138217.1;Parent=Physo138217;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 182760 183709 . - . ID=Physo138218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610052;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 182760 183709 . - . ID=Physo138218;Parent=Physo138218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 182760 183222 . - 0 ID=Physo138218;Parent=Physo138218;rank=2 scaffold_61 . exon 182760 183222 . - . ID=Physo138218.2;Parent=Physo138218;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 183309 183709 . - 0 ID=Physo138218;Parent=Physo138218;rank=1 scaffold_61 . exon 183309 183709 . - . ID=Physo138218.1;Parent=Physo138218;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 ensembl protein_coding_gene 187297 189596 . + . ID=Physo138219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610053;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 187297 189596 . + . ID=Physo138219;Parent=Physo138219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 187297 188506 . + 0 ID=Physo138219;Parent=Physo138219;rank=1 scaffold_61 . exon 187297 188506 . + . ID=Physo138219.1;Parent=Physo138219;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 188527 189482 . + 0 ID=Physo138219;Parent=Physo138219;rank=2 scaffold_61 . exon 188527 189482 . + . ID=Physo138219.2;Parent=Physo138219;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 189567 189596 . + 0 ID=Physo138219;Parent=Physo138219;rank=3 scaffold_61 . exon 189567 189596 . + . ID=Physo138219.3;Parent=Physo138219;constitutive=1;rank=3 scaffold_61 . biological_region 190550 190553 0.999 - . logic_name=eponine scaffold_61 . biological_region 190569 190577 0.999 - . logic_name=eponine scaffold_61 . repeat_region 196845 196853 . ? . description=dust scaffold_61 . repeat_region 202203 202376 . ? . description=trf scaffold_61 . repeat_region 202282 202338 . ? . description=trf scaffold_61 ensembl protein_coding_gene 203831 207925 . + . ID=Physo138220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610054;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 203831 207925 . + . ID=Physo138220;Parent=Physo138220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 203831 207925 . + 0 ID=Physo138220;Parent=Physo138220;rank=1 scaffold_61 . exon 203831 207925 . + . ID=Physo138220.1;Parent=Physo138220;constitutive=1;rank=1 scaffold_61 . biological_region 216005 216007 0.999 + . logic_name=eponine scaffold_61 . biological_region 216827 216830 0.999 - . logic_name=eponine scaffold_61 . biological_region 217875 217878 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 210193 212699 . + . ID=Physo138221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610055;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 210193 212699 . + . ID=Physo138221;Parent=Physo138221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 210193 210454 . + 0 ID=Physo138221;Parent=Physo138221;rank=1 scaffold_61 . exon 210193 210454 . + . ID=Physo138221.1;Parent=Physo138221;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 210992 211514 . + 0 ID=Physo138221;Parent=Physo138221;rank=2 scaffold_61 . exon 210992 211514 . + . ID=Physo138221.2;Parent=Physo138221;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_61 . CDS 211709 211988 . + 0 ID=Physo138221;Parent=Physo138221;rank=3 scaffold_61 . exon 211709 211988 . + . ID=Physo138221.3;Parent=Physo138221;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 . CDS 212046 212699 . + 0 ID=Physo138221;Parent=Physo138221;rank=4 scaffold_61 . exon 212046 212699 . + . ID=Physo138221.4;Parent=Physo138221;constitutive=1;rank=4 scaffold_61 ensembl protein_coding_gene 215220 216020 . - . ID=Physo138222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610056;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 215220 216020 . - . ID=Physo138222;Parent=Physo138222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 215220 216020 . - 0 ID=Physo138222;Parent=Physo138222;rank=1 scaffold_61 . exon 215220 216020 . - . ID=Physo138222.1;Parent=Physo138222;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 216471 217220 . + . ID=Physo138223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610057;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 216471 217220 . + . ID=Physo138223;Parent=Physo138223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 216471 217220 . + 0 ID=Physo138223;Parent=Physo138223;rank=1 scaffold_61 . exon 216471 217220 . + . ID=Physo138223.1;Parent=Physo138223;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 217605 219189 . + . ID=Physo138224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610058;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 217605 219189 . + . ID=Physo138224;Parent=Physo138224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 217605 217973 . + 0 ID=Physo138224;Parent=Physo138224;rank=1 scaffold_61 . exon 217605 217973 . + . ID=Physo138224.1;Parent=Physo138224;constitutive=1;rank=1 scaffold_61 . CDS 218071 219189 . + 0 ID=Physo138224;Parent=Physo138224;rank=2 scaffold_61 . exon 218071 219189 . + . ID=Physo138224.2;Parent=Physo138224;constitutive=1;rank=2 scaffold_61 . repeat_region 227200 227244 . ? . description=dust scaffold_61 . repeat_region 227219 227244 . ? . description=trf scaffold_61 . repeat_region 227306 227348 . ? . description=trf scaffold_61 ensembl protein_coding_gene 223259 226954 . - . ID=Physo109120;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610010;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 223259 226954 . - . ID=Physo109120;Parent=Physo109120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 223259 226954 . - . ID=Physo109120.1;Parent=Physo109120;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_61 . CDS 223361 226954 . - 0 ID=Physo109120;Parent=Physo109120;rank=1 scaffold_61 ensembl protein_coding_gene 222457 223253 . + . ID=Physo138225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610059;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 222457 223253 . + . ID=Physo138225;Parent=Physo138225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 222457 222721 . + 0 ID=Physo138225;Parent=Physo138225;rank=1 scaffold_61 . exon 222457 222721 . + . ID=Physo138225.1;Parent=Physo138225;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 222796 222869 . + 0 ID=Physo138225;Parent=Physo138225;rank=2 scaffold_61 . exon 222796 222869 . + . ID=Physo138225.2;Parent=Physo138225;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 222944 223063 . + 0 ID=Physo138225;Parent=Physo138225;rank=3 scaffold_61 . exon 222944 223063 . + . ID=Physo138225.3;Parent=Physo138225;constitutive=1;rank=3 scaffold_61 . CDS 223131 223253 . + 0 ID=Physo138225;Parent=Physo138225;rank=4 scaffold_61 . exon 223131 223253 . + . ID=Physo138225.4;Parent=Physo138225;constitutive=1;rank=4 scaffold_61 ensembl protein_coding_gene 227181 228156 . + . ID=Physo138227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610061;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 227181 228156 . + . ID=Physo138227;Parent=Physo138227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 227181 227378 . + 0 ID=Physo138227;Parent=Physo138227;rank=1 scaffold_61 . exon 227181 227378 . + . ID=Physo138227.1;Parent=Physo138227;constitutive=1;rank=1 scaffold_61 . CDS 227437 227681 . + 0 ID=Physo138227;Parent=Physo138227;rank=2 scaffold_61 . exon 227437 227681 . + . ID=Physo138227.2;Parent=Physo138227;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 227931 228156 . + 0 ID=Physo138227;Parent=Physo138227;rank=3 scaffold_61 . exon 227931 228156 . + . ID=Physo138227.3;Parent=Physo138227;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 ensembl protein_coding_gene 228666 229430 . + . ID=Physo138228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610062;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 228666 229430 . + . ID=Physo138228;Parent=Physo138228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 228666 229430 . + 0 ID=Physo138228;Parent=Physo138228;rank=1 scaffold_61 . exon 228666 229430 . + . ID=Physo138228.1;Parent=Physo138228;constitutive=1;rank=1 scaffold_61 . biological_region 233785 233786 0.999 - . logic_name=eponine scaffold_61 . biological_region 235523 235527 0.999 - . logic_name=eponine scaffold_61 . biological_region 236164 236165 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 229915 232571 . + . ID=Physo138229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610063;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 229915 232571 . + . ID=Physo138229;Parent=Physo138229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 229915 230252 . + 0 ID=Physo138229;Parent=Physo138229;rank=1 scaffold_61 . exon 229915 230252 . + . ID=Physo138229.1;Parent=Physo138229;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 230313 230448 . + 0 ID=Physo138229;Parent=Physo138229;rank=2 scaffold_61 . exon 230313 230448 . + . ID=Physo138229.2;Parent=Physo138229;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 230527 230643 . + 0 ID=Physo138229;Parent=Physo138229;rank=3 scaffold_61 . exon 230527 230643 . + . ID=Physo138229.3;Parent=Physo138229;constitutive=1;rank=3 scaffold_61 . CDS 230713 230813 . + 0 ID=Physo138229;Parent=Physo138229;rank=4 scaffold_61 . exon 230713 230813 . + . ID=Physo138229.4;Parent=Physo138229;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_61 . CDS 230900 230965 . + 0 ID=Physo138229;Parent=Physo138229;rank=5 scaffold_61 . exon 230900 230965 . + . ID=Physo138229.5;Parent=Physo138229;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_61 . CDS 231032 231409 . + 0 ID=Physo138229;Parent=Physo138229;rank=6 scaffold_61 . exon 231032 231409 . + . ID=Physo138229.6;Parent=Physo138229;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_61 . CDS 231482 232571 . + 0 ID=Physo138229;Parent=Physo138229;rank=7 scaffold_61 . exon 231482 232571 . + . ID=Physo138229.7;Parent=Physo138229;constitutive=1;ensembl_phase=2;rank=7 scaffold_61 ensembl protein_coding_gene 235251 239535 . + . ID=Physo157787;biotype=protein_coding;external_name=C_scaffold_61000014;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 235251 239535 . + . ID=Physo157787;Parent=Physo157787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 235251 235584 . + 0 ID=Physo157787;Parent=Physo157787;rank=1 scaffold_61 . exon 235251 235584 . + . ID=Physo157787.1;Parent=Physo157787;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 235699 235776 . + 0 ID=Physo157787;Parent=Physo157787;rank=2 scaffold_61 . exon 235699 235776 . + . ID=Physo157787.2;Parent=Physo157787;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 235830 235945 . + 0 ID=Physo157787;Parent=Physo157787;rank=3 scaffold_61 . exon 235830 235945 . + . ID=Physo157787.3;Parent=Physo157787;constitutive=1;ensembl_phase=1;rank=3 scaffold_61 . CDS 236169 236263 . + 0 ID=Physo157787;Parent=Physo157787;rank=4 scaffold_61 . exon 236169 236263 . + . ID=Physo157787.4;Parent=Physo157787;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_61 . CDS 236352 236467 . + 0 ID=Physo157787;Parent=Physo157787;rank=5 scaffold_61 . exon 236352 236467 . + . ID=Physo157787.5;Parent=Physo157787;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_61 . CDS 236752 236849 . + 0 ID=Physo157787;Parent=Physo157787;rank=6 scaffold_61 . exon 236752 236849 . + . ID=Physo157787.6;Parent=Physo157787;constitutive=1;ensembl_phase=1;rank=6 scaffold_61 . CDS 236928 237402 . + 0 ID=Physo157787;Parent=Physo157787;rank=7 scaffold_61 . exon 236928 237402 . + . ID=Physo157787.7;Parent=Physo157787;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_61 . CDS 237517 237743 . + 0 ID=Physo157787;Parent=Physo157787;rank=8 scaffold_61 . exon 237517 237743 . + . ID=Physo157787.8;Parent=Physo157787;constitutive=1;ensembl_phase=1;rank=8 scaffold_61 . CDS 238275 238430 . + 0 ID=Physo157787;Parent=Physo157787;rank=9 scaffold_61 . exon 238275 238430 . + . ID=Physo157787.9;Parent=Physo157787;constitutive=1;rank=9 scaffold_61 . CDS 238509 238806 . + 0 ID=Physo157787;Parent=Physo157787;rank=10 scaffold_61 . exon 238509 238806 . + . ID=Physo157787.10;Parent=Physo157787;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_61 . CDS 239164 239486 . + 0 ID=Physo157787;Parent=Physo157787;rank=11 scaffold_61 . exon 239164 239486 . + . ID=Physo157787.11;Parent=Physo157787;constitutive=1;ensembl_phase=1;rank=11 scaffold_61 . CDS 239518 239535 . + 0 ID=Physo157787;Parent=Physo157787;rank=12 scaffold_61 . exon 239518 239535 . + . ID=Physo157787.12;Parent=Physo157787;constitutive=1;rank=12 scaffold_61 . repeat_region 243747 243792 . ? . description=trf scaffold_61 . repeat_region 248242 248298 . ? . description=trf scaffold_61 . repeat_region 248647 248671 . ? . description=trf scaffold_61 . repeat_region 248669 248760 . ? . description=dust scaffold_61 . repeat_region 248670 248728 . ? . description=trf scaffold_61 . repeat_region 248727 248760 . ? . description=trf scaffold_61 . repeat_region 249502 249559 . ? . description=dust scaffold_61 ensembl protein_coding_gene 241370 242954 . - . ID=Physo138231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610065;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 241370 242954 . - . ID=Physo138231;Parent=Physo138231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 241370 242488 . - 0 ID=Physo138231;Parent=Physo138231;rank=2 scaffold_61 . exon 241370 242488 . - . ID=Physo138231.2;Parent=Physo138231;constitutive=1;rank=2 scaffold_61 . CDS 242586 242954 . - 0 ID=Physo138231;Parent=Physo138231;rank=1 scaffold_61 . exon 242586 242954 . - . ID=Physo138231.1;Parent=Physo138231;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 243339 243722 . - . ID=Physo138232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610066;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 243339 243722 . - . ID=Physo138232;Parent=Physo138232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 243339 243722 . - 0 ID=Physo138232;Parent=Physo138232;rank=1 scaffold_61 . exon 243339 243722 . - . ID=Physo138232.1;Parent=Physo138232;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 246702 247310 . - . ID=Physo138233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610067;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 246702 247310 . - . ID=Physo138233;Parent=Physo138233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 246702 247043 . - . ID=Physo138233.3;Parent=Physo138233;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_61 . CDS 246901 247043 . - 0 ID=Physo138233;Parent=Physo138233;rank=3 scaffold_61 . CDS 247075 247258 . - 0 ID=Physo138233;Parent=Physo138233;rank=2 scaffold_61 . exon 247075 247258 . - . ID=Physo138233.2;Parent=Physo138233;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_61 . CDS 247308 247310 . - 0 ID=Physo138233;Parent=Physo138233;rank=1 scaffold_61 . exon 247308 247310 . - . ID=Physo138233.1;Parent=Physo138233;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 249606 250481 . + . ID=Physo138234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610068;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 249606 250481 . + . ID=Physo138234;Parent=Physo138234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 249606 250481 . + 0 ID=Physo138234;Parent=Physo138234;rank=1 scaffold_61 . exon 249606 250481 . + . ID=Physo138234.1;Parent=Physo138234;constitutive=1;rank=1 scaffold_61 . biological_region 267422 267423 0.999 + . logic_name=eponine scaffold_61 ensembl protein_coding_gene 261348 262183 . + . ID=Physo138235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610069;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 261348 262183 . + . ID=Physo138235;Parent=Physo138235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 261348 261480 . + 0 ID=Physo138235;Parent=Physo138235;rank=1 scaffold_61 . exon 261348 261480 . + . ID=Physo138235.1;Parent=Physo138235;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 261888 262183 . + 0 ID=Physo138235;Parent=Physo138235;rank=2 scaffold_61 . exon 261888 262183 . + . ID=Physo138235.2;Parent=Physo138235;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . repeat_region 276828 276851 . ? . description=trf scaffold_61 . repeat_region 276828 276858 . ? . description=dust scaffold_61 ensembl protein_coding_gene 276058 276926 . + . ID=Physo119339;biotype=protein_coding;external_name=estExt_Genewise1.C_610144;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 276058 276926 . + . ID=Physo119339;Parent=Physo119339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 276058 276200 . + . ID=Physo119339.1;Parent=Physo119339;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 . CDS 276090 276200 . + 0 ID=Physo119339;Parent=Physo119339;rank=1 scaffold_61 . CDS 276323 276772 . + 0 ID=Physo119339;Parent=Physo119339;rank=2 scaffold_61 . exon 276323 276772 . + . ID=Physo119339.2;Parent=Physo119339;constitutive=1;rank=2 scaffold_61 . CDS 276862 276903 . + 0 ID=Physo119339;Parent=Physo119339;rank=3 scaffold_61 . exon 276862 276926 . + . ID=Physo119339.3;Parent=Physo119339;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_61 ensembl protein_coding_gene 277103 278319 . - . ID=Physo138237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610071;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 277103 278319 . - . ID=Physo138237;Parent=Physo138237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 277103 277169 . - 0 ID=Physo138237;Parent=Physo138237;rank=2 scaffold_61 . exon 277103 277169 . - . ID=Physo138237.2;Parent=Physo138237;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 277241 278319 . - 0 ID=Physo138237;Parent=Physo138237;rank=1 scaffold_61 . exon 277241 278319 . - . ID=Physo138237.1;Parent=Physo138237;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 ensembl protein_coding_gene 278488 279581 . - . ID=Physo138238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610072;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 278488 279581 . - . ID=Physo138238;Parent=Physo138238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 278488 278760 . - . ID=Physo138238.5;Parent=Physo138238;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_61 . CDS 278496 278760 . - 0 ID=Physo138238;Parent=Physo138238;rank=5 scaffold_61 . CDS 278837 278983 . - 0 ID=Physo138238;Parent=Physo138238;rank=4 scaffold_61 . exon 278837 278983 . - . ID=Physo138238.4;Parent=Physo138238;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_61 . CDS 279062 279246 . - 0 ID=Physo138238;Parent=Physo138238;rank=3 scaffold_61 . exon 279062 279246 . - . ID=Physo138238.3;Parent=Physo138238;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . CDS 279328 279464 . - 0 ID=Physo138238;Parent=Physo138238;rank=2 scaffold_61 . exon 279328 279464 . - . ID=Physo138238.2;Parent=Physo138238;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 279534 279579 . - 0 ID=Physo138238;Parent=Physo138238;rank=1 scaffold_61 . exon 279534 279581 . - . ID=Physo138238.1;Parent=Physo138238;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_61 . biological_region 279580 279584 0.999 - . logic_name=eponine scaffold_61 . biological_region 281374 281375 0.999 - . logic_name=eponine scaffold_61 . biological_region 281583 281588 0.999 + . logic_name=eponine scaffold_61 . repeat_region 281626 281807 . + . description=(CGA)n scaffold_61 . biological_region 281628 281632 0.999 - . logic_name=eponine scaffold_61 . biological_region 281668 281673 0.999 - . logic_name=eponine scaffold_61 . biological_region 281687 281690 0.999 - . logic_name=eponine scaffold_61 . biological_region 281708 281712 0.999 - . logic_name=eponine scaffold_61 . biological_region 281731 281736 0.999 - . logic_name=eponine scaffold_61 . biological_region 281755 281756 0.999 - . logic_name=eponine scaffold_61 . biological_region 281835 281836 0.999 + . logic_name=eponine scaffold_61 . biological_region 281873 281876 0.999 - . logic_name=eponine scaffold_61 . biological_region 281902 281903 0.999 - . logic_name=eponine scaffold_61 . biological_region 281978 281982 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 281349 282665 . + . ID=Physo138239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610073;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 281349 282665 . + . ID=Physo138239;Parent=Physo138239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 281349 282665 . + . ID=Physo138239.1;Parent=Physo138239;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 . CDS 281442 282665 . + 0 ID=Physo138239;Parent=Physo138239;rank=1 scaffold_61 ensembl protein_coding_gene 288071 288710 . - . ID=Physo138240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610074;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 288071 288710 . - . ID=Physo138240;Parent=Physo138240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 288071 288335 . - 0 ID=Physo138240;Parent=Physo138240;rank=3 scaffold_61 . exon 288071 288335 . - . ID=Physo138240.3;Parent=Physo138240;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 . CDS 288382 288619 . - 0 ID=Physo138240;Parent=Physo138240;rank=2 scaffold_61 . exon 288382 288619 . - . ID=Physo138240.2;Parent=Physo138240;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_61 . CDS 288689 288710 . - 0 ID=Physo138240;Parent=Physo138240;rank=1 scaffold_61 . exon 288689 288710 . - . ID=Physo138240.1;Parent=Physo138240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . repeat_region 290387 290960 . ? . description=trf scaffold_61 . repeat_region 292998 293049 . ? . description=trf scaffold_61 . repeat_region 293013 293049 . ? . description=dust scaffold_61 . repeat_region 296634 296658 . ? . description=trf scaffold_61 . repeat_region 296824 296863 . ? . description=dust scaffold_61 ensembl protein_coding_gene 294332 296476 . + . ID=Physo119197;biotype=protein_coding;external_name=estExt_Genewise1.C_610002;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 294332 296476 . + . ID=Physo119197;Parent=Physo119197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 294332 294558 . + . ID=Physo119197.1;Parent=Physo119197;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 . CDS 294373 294558 . + 0 ID=Physo119197;Parent=Physo119197;rank=1 scaffold_61 . CDS 294646 294900 . + 0 ID=Physo119197;Parent=Physo119197;rank=2 scaffold_61 . exon 294646 294900 . + . ID=Physo119197.2;Parent=Physo119197;constitutive=1;rank=2 scaffold_61 . CDS 294981 295091 . + 0 ID=Physo119197;Parent=Physo119197;rank=3 scaffold_61 . exon 294981 295091 . + . ID=Physo119197.3;Parent=Physo119197;constitutive=1;rank=3 scaffold_61 . CDS 295156 295498 . + 0 ID=Physo119197;Parent=Physo119197;rank=4 scaffold_61 . exon 295156 295498 . + . ID=Physo119197.4;Parent=Physo119197;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_61 . CDS 295574 295777 . + 0 ID=Physo119197;Parent=Physo119197;rank=5 scaffold_61 . exon 295574 295777 . + . ID=Physo119197.5;Parent=Physo119197;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_61 . CDS 295849 296063 . + 0 ID=Physo119197;Parent=Physo119197;rank=6 scaffold_61 . exon 295849 296063 . + . ID=Physo119197.6;Parent=Physo119197;constitutive=1;ensembl_phase=1;rank=6 scaffold_61 . CDS 296141 296217 . + 0 ID=Physo119197;Parent=Physo119197;rank=7 scaffold_61 . exon 296141 296217 . + . ID=Physo119197.7;Parent=Physo119197;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_61 . CDS 296293 296476 . + 0 ID=Physo119197;Parent=Physo119197;rank=8 scaffold_61 . exon 296293 296476 . + . ID=Physo119197.8;Parent=Physo119197;constitutive=1;ensembl_phase=2;rank=8 scaffold_61 ensembl protein_coding_gene 293197 294243 . - . ID=Physo138241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610075;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 293197 294243 . - . ID=Physo138241;Parent=Physo138241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 293197 294243 . - 0 ID=Physo138241;Parent=Physo138241;rank=1 scaffold_61 . exon 293197 294243 . - . ID=Physo138241.1;Parent=Physo138241;constitutive=1;rank=1 scaffold_61 . repeat_region 303793 303975 . + . description=(ATG)n scaffold_61 . biological_region 306289 306293 0.999 + . logic_name=eponine scaffold_61 . biological_region 306411 306413 0.999 - . logic_name=eponine scaffold_61 . biological_region 306619 306620 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 308109 309469 . + . ID=Physo109121;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610011;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 308109 309469 . + . ID=Physo109121;Parent=Physo109121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 308109 309280 . + 0 ID=Physo109121;Parent=Physo109121;rank=1 scaffold_61 . exon 308109 309280 . + . ID=Physo109121.1;Parent=Physo109121;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 309367 309469 . + 0 ID=Physo109121;Parent=Physo109121;rank=2 scaffold_61 . exon 309367 309469 . + . ID=Physo109121.2;Parent=Physo109121;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 ensembl protein_coding_gene 303270 307967 . + . ID=Physo138243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610077;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 303270 307967 . + . ID=Physo138243;Parent=Physo138243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 303270 307967 . + 0 ID=Physo138243;Parent=Physo138243;rank=1 scaffold_61 . exon 303270 307967 . + . ID=Physo138243.1;Parent=Physo138243;constitutive=1;rank=1 scaffold_61 . repeat_region 311033 311042 . ? . description=dust scaffold_61 . repeat_region 317050 317163 . ? . description=trf scaffold_61 . repeat_region 317094 317213 . ? . description=dust scaffold_61 . repeat_region 317148 317214 . ? . description=trf scaffold_61 . repeat_region 317157 317211 . ? . description=trf scaffold_61 . repeat_region 317165 317223 . ? . description=trf scaffold_61 . repeat_region 317166 317229 . ? . description=trf scaffold_61 . repeat_region 317175 317225 . ? . description=trf scaffold_61 . repeat_region 317610 317632 . ? . description=trf scaffold_61 ensembl protein_coding_gene 309797 310507 . + . ID=Physo138245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610079;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 309797 310507 . + . ID=Physo138245;Parent=Physo138245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 309797 310507 . + 0 ID=Physo138245;Parent=Physo138245;rank=1 scaffold_61 . exon 309797 310507 . + . ID=Physo138245.1;Parent=Physo138245;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 314959 317589 . - . ID=Physo138246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610080;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 314959 317589 . - . ID=Physo138246;Parent=Physo138246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 314959 317589 . - 0 ID=Physo138246;Parent=Physo138246;rank=1 scaffold_61 . exon 314959 317589 . - . ID=Physo138246.1;Parent=Physo138246;constitutive=1;rank=1 scaffold_61 . biological_region 320200 320204 0.999 - . logic_name=eponine scaffold_61 . biological_region 321017 321020 0.999 + . logic_name=eponine scaffold_61 . biological_region 325938 325945 0.999 + . logic_name=eponine scaffold_61 . biological_region 326126 326130 0.999 + . logic_name=eponine scaffold_61 . biological_region 326185 326186 0.999 + . logic_name=eponine scaffold_61 . biological_region 326577 326578 0.999 - . logic_name=eponine scaffold_61 . biological_region 327206 327210 0.999 + . logic_name=eponine scaffold_61 . biological_region 327238 327240 0.999 + . logic_name=eponine scaffold_61 . biological_region 327258 327267 0.999 + . logic_name=eponine scaffold_61 . biological_region 327490 327496 0.999 + . logic_name=eponine scaffold_61 . biological_region 327513 327517 0.999 - . logic_name=eponine scaffold_61 . biological_region 327572 327574 0.999 - . logic_name=eponine scaffold_61 . biological_region 327852 327854 0.999 + . logic_name=eponine scaffold_61 . biological_region 327901 327902 0.999 + . logic_name=eponine scaffold_61 ensembl protein_coding_gene 320211 321516 . + . ID=Physo138247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610081;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 320211 321516 . + . ID=Physo138247;Parent=Physo138247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 320211 320653 . + 0 ID=Physo138247;Parent=Physo138247;rank=1 scaffold_61 . exon 320211 320653 . + . ID=Physo138247.1;Parent=Physo138247;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 320720 321515 . + 0 ID=Physo138247;Parent=Physo138247;rank=2 scaffold_61 . exon 320720 321516 . + . ID=Physo138247.2;Parent=Physo138247;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_61 ensembl protein_coding_gene 321699 324603 . - . ID=Physo138248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610082;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 321699 324603 . - . ID=Physo138248;Parent=Physo138248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 321699 324603 . - . ID=Physo138248.1;Parent=Physo138248;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_61 . CDS 322115 324262 . - 0 ID=Physo138248;Parent=Physo138248;rank=1 scaffold_61 ensembl protein_coding_gene 326049 327597 . - . ID=Physo138249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610083;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 326049 327597 . - . ID=Physo138249;Parent=Physo138249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 326049 326337 . - 0 ID=Physo138249;Parent=Physo138249;rank=2 scaffold_61 . exon 326049 326337 . - . ID=Physo138249.2;Parent=Physo138249;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 326420 327597 . - 0 ID=Physo138249;Parent=Physo138249;rank=1 scaffold_61 . exon 326420 327597 . - . ID=Physo138249.1;Parent=Physo138249;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . repeat_region 331432 331637 . ? . description=trf scaffold_61 . repeat_region 331611 331673 . ? . description=trf scaffold_61 . repeat_region 334506 334550 . ? . description=trf scaffold_61 . repeat_region 338620 338637 . ? . description=dust scaffold_61 ensembl protein_coding_gene 329692 330945 . + . ID=Physo109122;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610012;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 329692 330945 . + . ID=Physo109122;Parent=Physo109122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . exon 329692 330205 . + . ID=Physo109122.1;Parent=Physo109122;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_61 . CDS 329712 330205 . + 0 ID=Physo109122;Parent=Physo109122;rank=1 scaffold_61 . CDS 330283 330448 . + 0 ID=Physo109122;Parent=Physo109122;rank=2 scaffold_61 . exon 330283 330448 . + . ID=Physo109122.2;Parent=Physo109122;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 330521 330649 . + 0 ID=Physo109122;Parent=Physo109122;rank=3 scaffold_61 . exon 330521 330649 . + . ID=Physo109122.3;Parent=Physo109122;constitutive=1;rank=3 scaffold_61 . CDS 330725 330831 . + 0 ID=Physo109122;Parent=Physo109122;rank=4 scaffold_61 . exon 330725 330831 . + . ID=Physo109122.4;Parent=Physo109122;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_61 . CDS 330903 330945 . + 0 ID=Physo109122;Parent=Physo109122;rank=5 scaffold_61 . exon 330903 330945 . + . ID=Physo109122.5;Parent=Physo109122;constitutive=1;ensembl_phase=2;rank=5 scaffold_61 ensembl protein_coding_gene 333445 334491 . + . ID=Physo109123;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_610013;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 333445 334491 . + . ID=Physo109123;Parent=Physo109123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 333445 334491 . + 0 ID=Physo109123;Parent=Physo109123;rank=1 scaffold_61 . exon 333445 334491 . + . ID=Physo109123.1;Parent=Physo109123;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 331321 333306 . + . ID=Physo138251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610085;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 331321 333306 . + . ID=Physo138251;Parent=Physo138251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 331321 332646 . + 0 ID=Physo138251;Parent=Physo138251;rank=1 scaffold_61 . exon 331321 332646 . + . ID=Physo138251.1;Parent=Physo138251;constitutive=1;rank=1 scaffold_61 . CDS 332828 332947 . + 0 ID=Physo138251;Parent=Physo138251;rank=2 scaffold_61 . exon 332828 332947 . + . ID=Physo138251.2;Parent=Physo138251;constitutive=1;rank=2 scaffold_61 . CDS 333031 333306 . + 0 ID=Physo138251;Parent=Physo138251;rank=3 scaffold_61 . exon 333031 333306 . + . ID=Physo138251.3;Parent=Physo138251;constitutive=1;rank=3 scaffold_61 ensembl protein_coding_gene 336009 339414 . - . ID=Physo157789;biotype=protein_coding;external_name=C_scaffold_61000016;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 336009 339414 . - . ID=Physo157789;Parent=Physo157789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 336009 336259 . - 0 ID=Physo157789;Parent=Physo157789;rank=9 scaffold_61 . exon 336009 336259 . - . ID=Physo157789.9;Parent=Physo157789;constitutive=1;ensembl_phase=1;rank=9 scaffold_61 . CDS 336692 336887 . - 0 ID=Physo157789;Parent=Physo157789;rank=8 scaffold_61 . exon 336692 336887 . - . ID=Physo157789.8;Parent=Physo157789;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_61 . CDS 337155 337297 . - 0 ID=Physo157789;Parent=Physo157789;rank=7 scaffold_61 . exon 337155 337297 . - . ID=Physo157789.7;Parent=Physo157789;constitutive=1;ensembl_phase=1;rank=7 scaffold_61 . CDS 337402 338091 . - 0 ID=Physo157789;Parent=Physo157789;rank=6 scaffold_61 . exon 337402 338091 . - . ID=Physo157789.6;Parent=Physo157789;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_61 . CDS 338137 338276 . - 0 ID=Physo157789;Parent=Physo157789;rank=5 scaffold_61 . exon 338137 338276 . - . ID=Physo157789.5;Parent=Physo157789;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_61 . CDS 338340 338605 . - 0 ID=Physo157789;Parent=Physo157789;rank=4 scaffold_61 . exon 338340 338605 . - . ID=Physo157789.4;Parent=Physo157789;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_61 . CDS 338678 338790 . - 0 ID=Physo157789;Parent=Physo157789;rank=3 scaffold_61 . exon 338678 338790 . - . ID=Physo157789.3;Parent=Physo157789;constitutive=1;ensembl_phase=1;rank=3 scaffold_61 . CDS 338861 339135 . - 0 ID=Physo157789;Parent=Physo157789;rank=2 scaffold_61 . exon 338861 339135 . - . ID=Physo157789.2;Parent=Physo157789;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 339269 339414 . - 0 ID=Physo157789;Parent=Physo157789;rank=1 scaffold_61 . exon 339269 339414 . - . ID=Physo157789.1;Parent=Physo157789;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . biological_region 344131 344132 0.999 + . logic_name=eponine scaffold_61 . biological_region 344132 344135 0.999 - . logic_name=eponine scaffold_61 . biological_region 345163 345165 0.999 - . logic_name=eponine scaffold_61 . biological_region 348736 348739 0.999 - . logic_name=eponine scaffold_61 . biological_region 348820 348820 0.999 + . logic_name=eponine scaffold_61 . biological_region 349010 349017 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 339599 341929 . + . ID=Physo138254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610088;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 339599 341929 . + . ID=Physo138254;Parent=Physo138254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 339599 341929 . + 0 ID=Physo138254;Parent=Physo138254;rank=1 scaffold_61 . exon 339599 341929 . + . ID=Physo138254.1;Parent=Physo138254;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 342592 343589 . - . ID=Physo138255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610089;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 342592 343589 . - . ID=Physo138255;Parent=Physo138255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 342592 342783 . - 0 ID=Physo138255;Parent=Physo138255;rank=5 scaffold_61 . exon 342592 342783 . - . ID=Physo138255.5;Parent=Physo138255;constitutive=1;rank=5 scaffold_61 . CDS 342853 342998 . - 0 ID=Physo138255;Parent=Physo138255;rank=4 scaffold_61 . exon 342853 342998 . - . ID=Physo138255.4;Parent=Physo138255;constitutive=1;ensembl_phase=1;rank=4 scaffold_61 . CDS 343084 343285 . - 0 ID=Physo138255;Parent=Physo138255;rank=3 scaffold_61 . exon 343084 343285 . - . ID=Physo138255.3;Parent=Physo138255;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_61 . CDS 343363 343422 . - 0 ID=Physo138255;Parent=Physo138255;rank=2 scaffold_61 . exon 343363 343422 . - . ID=Physo138255.2;Parent=Physo138255;constitutive=1;rank=2 scaffold_61 . CDS 343527 343589 . - 0 ID=Physo138255;Parent=Physo138255;rank=1 scaffold_61 . exon 343527 343589 . - . ID=Physo138255.1;Parent=Physo138255;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 344027 344705 . + . ID=Physo138256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610090;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 344027 344705 . + . ID=Physo138256;Parent=Physo138256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 344027 344206 . + 0 ID=Physo138256;Parent=Physo138256;rank=1 scaffold_61 . exon 344027 344206 . + . ID=Physo138256.1;Parent=Physo138256;constitutive=1;rank=1 scaffold_61 . CDS 344285 344646 . + 0 ID=Physo138256;Parent=Physo138256;rank=2 scaffold_61 . exon 344285 344646 . + . ID=Physo138256.2;Parent=Physo138256;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 344699 344705 . + 0 ID=Physo138256;Parent=Physo138256;rank=3 scaffold_61 . exon 344699 344705 . + . ID=Physo138256.3;Parent=Physo138256;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 ensembl protein_coding_gene 346814 351315 . - . ID=Physo138257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610091;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 346814 351315 . - . ID=Physo138257;Parent=Physo138257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 346814 346911 . - 0 ID=Physo138257;Parent=Physo138257;rank=14 scaffold_61 . exon 346814 346911 . - . ID=Physo138257.14;Parent=Physo138257;constitutive=1;ensembl_phase=1;rank=14 scaffold_61 . CDS 346981 347069 . - 0 ID=Physo138257;Parent=Physo138257;rank=13 scaffold_61 . exon 346981 347069 . - . ID=Physo138257.13;Parent=Physo138257;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_61 . CDS 347125 347184 . - 0 ID=Physo138257;Parent=Physo138257;rank=12 scaffold_61 . exon 347125 347184 . - . ID=Physo138257.12;Parent=Physo138257;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_61 . CDS 347254 347319 . - 0 ID=Physo138257;Parent=Physo138257;rank=11 scaffold_61 . exon 347254 347319 . - . ID=Physo138257.11;Parent=Physo138257;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_61 . CDS 347394 347548 . - 0 ID=Physo138257;Parent=Physo138257;rank=10 scaffold_61 . exon 347394 347548 . - . ID=Physo138257.10;Parent=Physo138257;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_61 . CDS 347621 347755 . - 0 ID=Physo138257;Parent=Physo138257;rank=9 scaffold_61 . exon 347621 347755 . - . ID=Physo138257.9;Parent=Physo138257;constitutive=1;rank=9 scaffold_61 . CDS 347987 348128 . - 0 ID=Physo138257;Parent=Physo138257;rank=8 scaffold_61 . exon 347987 348128 . - . ID=Physo138257.8;Parent=Physo138257;constitutive=1;ensembl_phase=2;rank=8 scaffold_61 . CDS 348209 348308 . - 0 ID=Physo138257;Parent=Physo138257;rank=7 scaffold_61 . exon 348209 348308 . - . ID=Physo138257.7;Parent=Physo138257;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_61 . CDS 348378 349030 . - 0 ID=Physo138257;Parent=Physo138257;rank=6 scaffold_61 . exon 348378 349030 . - . ID=Physo138257.6;Parent=Physo138257;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_61 . CDS 349260 349621 . - 0 ID=Physo138257;Parent=Physo138257;rank=5 scaffold_61 . exon 349260 349621 . - . ID=Physo138257.5;Parent=Physo138257;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_61 . CDS 349697 349936 . - 0 ID=Physo138257;Parent=Physo138257;rank=4 scaffold_61 . CDS 350009 350148 . - 0 ID=Physo138257;Parent=Physo138257;rank=3 scaffold_61 . CDS 350529 350682 . - 0 ID=Physo138257;Parent=Physo138257;rank=2 scaffold_61 . CDS 350758 351315 . - 0 ID=Physo138257;Parent=Physo138257;rank=1 scaffold_61 ensembl protein_coding_gene 344861 346384 . + . ID=Physo157791;biotype=protein_coding;external_name=C_scaffold_61000018;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 344861 346384 . + . ID=Physo157791;Parent=Physo157791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 344861 345128 . + 0 ID=Physo157791;Parent=Physo157791;rank=1 scaffold_61 . exon 344861 345128 . + . ID=Physo157791.1;Parent=Physo157791;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 345195 345259 . + 0 ID=Physo157791;Parent=Physo157791;rank=2 scaffold_61 . exon 345195 345259 . + . ID=Physo157791.2;Parent=Physo157791;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 . CDS 345365 345423 . + 0 ID=Physo157791;Parent=Physo157791;rank=3 scaffold_61 . exon 345365 345423 . + . ID=Physo157791.3;Parent=Physo157791;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . CDS 345469 345847 . + 0 ID=Physo157791;Parent=Physo157791;rank=4 scaffold_61 . exon 345469 345847 . + . ID=Physo157791.4;Parent=Physo157791;constitutive=1;ensembl_phase=2;rank=4 scaffold_61 . CDS 345918 345992 . + 0 ID=Physo157791;Parent=Physo157791;rank=5 scaffold_61 . exon 345918 345992 . + . ID=Physo157791.5;Parent=Physo157791;constitutive=1;rank=5 scaffold_61 . CDS 346032 346105 . + 0 ID=Physo157791;Parent=Physo157791;rank=6 scaffold_61 . exon 346032 346105 . + . ID=Physo157791.6;Parent=Physo157791;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_61 . CDS 346318 346384 . + 0 ID=Physo157791;Parent=Physo157791;rank=7 scaffold_61 . exon 346318 346384 . + . ID=Physo157791.7;Parent=Physo157791;constitutive=1;ensembl_phase=2;rank=7 scaffold_61 . repeat_region 351346 351353 . ? . description=dust scaffold_61 . repeat_region 351391 351427 . ? . description=trf scaffold_61 . repeat_region 356882 356895 . ? . description=dust scaffold_61 . repeat_region 358903 358912 . ? . description=dust scaffold_61 ensembl protein_coding_gene 352495 354105 . - . ID=Physo119227;biotype=protein_coding;external_name=estExt_Genewise1.C_610032;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 352495 354105 . - . ID=Physo119227;Parent=Physo119227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 352495 352825 . - 0 ID=Physo119227;Parent=Physo119227;rank=5 scaffold_61 . exon 352495 352825 . - . ID=Physo119227.5;Parent=Physo119227;constitutive=1;ensembl_phase=2;rank=5 scaffold_61 . CDS 352856 352960 . - 0 ID=Physo119227;Parent=Physo119227;rank=4 scaffold_61 . exon 352856 352960 . - . ID=Physo119227.4;Parent=Physo119227;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_61 . CDS 353003 353583 . - 0 ID=Physo119227;Parent=Physo119227;rank=3 scaffold_61 . exon 353003 353583 . - . ID=Physo119227.3;Parent=Physo119227;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_61 . CDS 353657 353734 . - 0 ID=Physo119227;Parent=Physo119227;rank=2 scaffold_61 . exon 353657 353734 . - . ID=Physo119227.2;Parent=Physo119227;constitutive=1;rank=2 scaffold_61 . CDS 353842 353868 . - 0 ID=Physo119227;Parent=Physo119227;rank=1 scaffold_61 . exon 353842 354105 . - . ID=Physo119227.1;Parent=Physo119227;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 . exon 349697 349936 . - . ID=Physo138257.4;Parent=Physo138257;constitutive=1;rank=4 scaffold_61 . exon 350009 350148 . - . ID=Physo138257.3;Parent=Physo138257;constitutive=1;ensembl_phase=1;rank=3 scaffold_61 . exon 350529 350682 . - . ID=Physo138257.2;Parent=Physo138257;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_61 . exon 350758 351315 . - . ID=Physo138257.1;Parent=Physo138257;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 351517 352135 . + . ID=Physo138258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610092;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 351517 352135 . + . ID=Physo138258;Parent=Physo138258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 351517 351718 . + 0 ID=Physo138258;Parent=Physo138258;rank=1 scaffold_61 . exon 351517 351718 . + . ID=Physo138258.1;Parent=Physo138258;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_61 . CDS 351792 352135 . + 0 ID=Physo138258;Parent=Physo138258;rank=2 scaffold_61 . exon 351792 352135 . + . ID=Physo138258.2;Parent=Physo138258;constitutive=1;ensembl_phase=1;rank=2 scaffold_61 ensembl protein_coding_gene 357555 357872 . - . ID=Physo138260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610094;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 357555 357872 . - . ID=Physo138260;Parent=Physo138260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 357555 357872 . - 0 ID=Physo138260;Parent=Physo138260;rank=1 scaffold_61 . exon 357555 357872 . - . ID=Physo138260.1;Parent=Physo138260;constitutive=1;rank=1 scaffold_61 . biological_region 363015 363018 0.999 + . logic_name=eponine scaffold_61 . biological_region 363040 363040 0.999 + . logic_name=eponine scaffold_61 . biological_region 369427 369432 0.999 - . logic_name=eponine scaffold_61 ensembl protein_coding_gene 364301 365279 . - . ID=Physo138261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610095;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 364301 365279 . - . ID=Physo138261;Parent=Physo138261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 364301 364528 . - 0 ID=Physo138261;Parent=Physo138261;rank=4 scaffold_61 . exon 364301 364528 . - . ID=Physo138261.4;Parent=Physo138261;constitutive=1;rank=4 scaffold_61 . CDS 364591 364825 . - 0 ID=Physo138261;Parent=Physo138261;rank=3 scaffold_61 . exon 364591 364825 . - . ID=Physo138261.3;Parent=Physo138261;constitutive=1;ensembl_phase=2;rank=3 scaffold_61 . CDS 364981 364988 . - 0 ID=Physo138261;Parent=Physo138261;rank=2 scaffold_61 . exon 364981 364988 . - . ID=Physo138261.2;Parent=Physo138261;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_61 . CDS 365100 365279 . - 0 ID=Physo138261;Parent=Physo138261;rank=1 scaffold_61 . exon 365100 365279 . - . ID=Physo138261.1;Parent=Physo138261;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 369120 369611 . + . ID=Physo138262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610096;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 369120 369611 . + . ID=Physo138262;Parent=Physo138262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 369120 369611 . + 0 ID=Physo138262;Parent=Physo138262;rank=1 scaffold_61 . exon 369120 369611 . + . ID=Physo138262.1;Parent=Physo138262;constitutive=1;rank=1 scaffold_61 . repeat_region 370506 370516 . ? . description=dust scaffold_61 . repeat_region 371773 371789 . ? . description=dust scaffold_61 . repeat_region 372007 372060 . ? . description=trf scaffold_61 . repeat_region 375634 375684 . ? . description=trf scaffold_61 . repeat_region 377049 377120 . ? . description=dust scaffold_61 . repeat_region 377653 377661 . ? . description=dust scaffold_61 . repeat_region 378441 378696 . ? . description=trf scaffold_61 . repeat_region 378441 378696 . ? . description=trf scaffold_61 . repeat_region 378445 378696 . ? . description=trf scaffold_61 . repeat_region 378676 378752 . ? . description=trf scaffold_61 ensembl protein_coding_gene 385977 386114 . - . ID=Physo119231;biotype=protein_coding;external_name=estExt_Genewise1.C_610036;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 385977 386114 . - . ID=Physo119231;Parent=Physo119231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 385977 386075 . - 0 ID=Physo119231;Parent=Physo119231;rank=1 scaffold_61 . exon 385977 386114 . - . ID=Physo119231.1;Parent=Physo119231;constitutive=1;ensembl_phase=-1;rank=1 scaffold_61 ensembl protein_coding_gene 387619 389001 . - . ID=Physo138263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610097;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 387619 389001 . - . ID=Physo138263;Parent=Physo138263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 387619 387765 . - 0 ID=Physo138263;Parent=Physo138263;rank=4 scaffold_61 . exon 387619 387765 . - . ID=Physo138263.4;Parent=Physo138263;constitutive=1;rank=4 scaffold_61 . CDS 387906 388250 . - 0 ID=Physo138263;Parent=Physo138263;rank=3 scaffold_61 . exon 387906 388250 . - . ID=Physo138263.3;Parent=Physo138263;constitutive=1;rank=3 scaffold_61 . CDS 388313 388555 . - 0 ID=Physo138263;Parent=Physo138263;rank=2 scaffold_61 . exon 388313 388555 . - . ID=Physo138263.2;Parent=Physo138263;constitutive=1;rank=2 scaffold_61 . CDS 388822 389001 . - 0 ID=Physo138263;Parent=Physo138263;rank=1 scaffold_61 . exon 388822 389001 . - . ID=Physo138263.1;Parent=Physo138263;constitutive=1;rank=1 scaffold_61 . repeat_region 392648 392658 . ? . description=dust scaffold_61 ensembl tRNA_gene 392114 392185 . + . ID=EPrPSOG00000000251;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_61 ensembl transcript 392114 392185 . + . ID=EPrPSOT00000000251;Parent=EPrPSOG00000000251;biotype=tRNA;logic_name=ncrna_eg scaffold_61 . exon 392114 392185 . + . ID=EPrPSOE00000000251;Parent=EPrPSOT00000000251;constitutive=1;rank=1 scaffold_61 . repeat_region 401508 401776 . ? . description=trf scaffold_61 . repeat_region 402496 402553 . ? . description=trf scaffold_61 . biological_region 402622 402623 0.999 + . logic_name=eponine scaffold_61 . repeat_region 402856 402889 . ? . description=trf scaffold_61 . biological_region 409139 409143 0.999 - . logic_name=eponine scaffold_61 . repeat_region 410648 410762 . + . description=(TCTG)n scaffold_61 . repeat_region 410652 410762 . ? . description=dust scaffold_61 . repeat_region 411938 412040 . + . description=(TCTG)n scaffold_61 . repeat_region 411942 412040 . ? . description=dust scaffold_61 ensembl tRNA_gene 411325 411396 . + . ID=EPrPSOG00000000006;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_61 ensembl transcript 411325 411396 . + . ID=EPrPSOT00000000006;Parent=EPrPSOG00000000006;biotype=tRNA;logic_name=ncrna_eg scaffold_61 ensembl tRNA_gene 410913 410984 . + . ID=EPrPSOG00000000057;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_61 ensembl transcript 410913 410984 . + . ID=EPrPSOT00000000057;Parent=EPrPSOG00000000057;biotype=tRNA;logic_name=ncrna_eg scaffold_61 ensembl tRNA_gene 409622 409693 . + . ID=EPrPSOG00000000079;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_61 ensembl transcript 409622 409693 . + . ID=EPrPSOT00000000079;Parent=EPrPSOG00000000079;biotype=tRNA;logic_name=ncrna_eg scaffold_61 ensembl tRNA_gene 412201 412272 . + . ID=EPrPSOG00000000198;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_61 ensembl transcript 412201 412272 . + . ID=EPrPSOT00000000198;Parent=EPrPSOG00000000198;biotype=tRNA;logic_name=ncrna_eg scaffold_61 ensembl tRNA_gene 410035 410106 . + . ID=EPrPSOG00000000289;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_61 ensembl transcript 410035 410106 . + . ID=EPrPSOT00000000289;Parent=EPrPSOG00000000289;biotype=tRNA;logic_name=ncrna_eg scaffold_61 . exon 411325 411396 . + . ID=EPrPSOE00000000006;Parent=EPrPSOT00000000006;constitutive=1;rank=1 scaffold_61 . exon 410913 410984 . + . ID=EPrPSOE00000000057;Parent=EPrPSOT00000000057;constitutive=1;rank=1 scaffold_61 . exon 409622 409693 . + . ID=EPrPSOE00000000079;Parent=EPrPSOT00000000079;constitutive=1;rank=1 scaffold_61 . exon 412201 412272 . + . ID=EPrPSOE00000000198;Parent=EPrPSOT00000000198;constitutive=1;rank=1 scaffold_61 . exon 410035 410106 . + . ID=EPrPSOE00000000289;Parent=EPrPSOT00000000289;constitutive=1;rank=1 scaffold_61 ensembl protein_coding_gene 416635 421426 . + . ID=Physo138264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_610098;logic_name=jgi_physo1_1 scaffold_61 ensembl transcript 416635 421426 . + . ID=Physo138264;Parent=Physo138264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_61 . CDS 416635 417023 . + 0 ID=Physo138264;Parent=Physo138264;rank=1 scaffold_61 . exon 416635 417023 . + . ID=Physo138264.1;Parent=Physo138264;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_61 . CDS 417108 417171 . + 0 ID=Physo138264;Parent=Physo138264;rank=2 scaffold_61 . exon 417108 417171 . + . ID=Physo138264.2;Parent=Physo138264;constitutive=1;ensembl_phase=2;rank=2 scaffold_61 . CDS 417382 418104 . + 0 ID=Physo138264;Parent=Physo138264;rank=3 scaffold_61 . exon 417382 418104 . + . ID=Physo138264.3;Parent=Physo138264;constitutive=1;rank=3 scaffold_61 . CDS 418339 418869 . + 0 ID=Physo138264;Parent=Physo138264;rank=4 scaffold_61 . exon 418339 418869 . + . ID=Physo138264.4;Parent=Physo138264;constitutive=1;rank=4 scaffold_61 . CDS 418933 419409 . + 0 ID=Physo138264;Parent=Physo138264;rank=5 scaffold_61 . exon 418933 419409 . + . ID=Physo138264.5;Parent=Physo138264;constitutive=1;rank=5 scaffold_61 . CDS 419764 420766 . + 0 ID=Physo138264;Parent=Physo138264;rank=6 scaffold_61 . CDS 420943 421283 . + 0 ID=Physo138264;Parent=Physo138264;rank=7 scaffold_61 . biological_region 419677 419685 0.999 + . logic_name=eponine scaffold_61 . biological_region 420024 420026 0.999 - . logic_name=eponine scaffold_61 . repeat_region 425764 425802 . ? . description=trf scaffold_61 . biological_region 428632 428634 0.999 + . logic_name=eponine scaffold_61 . biological_region 428973 428981 0.999 - . logic_name=eponine scaffold_61 . exon 419764 420766 . + . ID=Physo138264.6;Parent=Physo138264;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_61 . exon 420943 421426 . + . ID=Physo138264.7;Parent=Physo138264;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 ##gff-version 3 ##sequence-region scaffold_60 1 434298 scaffold_60 . repeat_region 256 335 . + . description=(CAGAG)n scaffold_60 . repeat_region 274 328 . ? . description=trf scaffold_60 . repeat_region 275 328 . ? . description=trf scaffold_60 . repeat_region 1066 2855 . ? . description=dust scaffold_60 . repeat_region 4285 7476 . ? . description=dust scaffold_60 . repeat_region 8759 8799 . ? . description=trf scaffold_60 . biological_region 8938 8942 0.999 - . logic_name=eponine scaffold_60 . biological_region 8958 8964 0.999 - . logic_name=eponine scaffold_60 . biological_region 9037 9040 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 8277 9333 . + . ID=Physo138042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600001;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 8277 9333 . + . ID=Physo138042;Parent=Physo138042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 8277 8354 . + 0 ID=Physo138042;Parent=Physo138042;rank=1 scaffold_60 . exon 8277 8354 . + . ID=Physo138042.1;Parent=Physo138042;constitutive=1;rank=1 scaffold_60 . CDS 8651 8988 . + 0 ID=Physo138042;Parent=Physo138042;rank=2 scaffold_60 . exon 8651 8988 . + . ID=Physo138042.2;Parent=Physo138042;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_60 . CDS 9039 9333 . + 0 ID=Physo138042;Parent=Physo138042;rank=3 scaffold_60 . exon 9039 9333 . + . ID=Physo138042.3;Parent=Physo138042;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 ensembl protein_coding_gene 12484 13944 . + . ID=Physo109095;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600001;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 12484 13944 . + . ID=Physo109095;Parent=Physo109095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 12484 13944 . + . ID=Physo109095.1;Parent=Physo109095;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 12499 13944 . + 0 ID=Physo109095;Parent=Physo109095;rank=1 scaffold_60 ensembl protein_coding_gene 17718 18453 . - . ID=Physo119130;biotype=protein_coding;external_name=estExt_Genewise1.C_600048;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 17718 18453 . - . ID=Physo119130;Parent=Physo119130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 17718 18058 . - . ID=Physo119130.3;Parent=Physo119130;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_60 . CDS 17719 17949 . - 0 ID=Physo119130;Parent=Physo119130;rank=1 scaffold_60 . exon 18144 18224 . - . ID=Physo119130.2;Parent=Physo119130;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_60 . exon 18300 18453 . - . ID=Physo119130.1;Parent=Physo119130;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 11109 12071 . - . ID=Physo138043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600002;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 11109 12071 . - . ID=Physo138043;Parent=Physo138043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 11109 12071 . - 0 ID=Physo138043;Parent=Physo138043;rank=1 scaffold_60 . exon 11109 12071 . - . ID=Physo138043.1;Parent=Physo138043;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 14216 14635 . - . ID=Physo138045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600004;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 14216 14635 . - . ID=Physo138045;Parent=Physo138045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 14216 14467 . - 0 ID=Physo138045;Parent=Physo138045;rank=2 scaffold_60 . exon 14216 14467 . - . ID=Physo138045.2;Parent=Physo138045;constitutive=1;rank=2 scaffold_60 . CDS 14534 14635 . - 0 ID=Physo138045;Parent=Physo138045;rank=1 scaffold_60 . exon 14534 14635 . - . ID=Physo138045.1;Parent=Physo138045;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 14854 16026 . - . ID=Physo138046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600005;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 14854 16026 . - . ID=Physo138046;Parent=Physo138046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 14854 16026 . - 0 ID=Physo138046;Parent=Physo138046;rank=1 scaffold_60 . exon 14854 16026 . - . ID=Physo138046.1;Parent=Physo138046;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 16187 17220 . + . ID=Physo138047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600006;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 16187 17220 . + . ID=Physo138047;Parent=Physo138047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 16187 17220 . + . ID=Physo138047.1;Parent=Physo138047;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 16201 17220 . + 0 ID=Physo138047;Parent=Physo138047;rank=1 scaffold_60 ensembl protein_coding_gene 18719 19720 . + . ID=Physo138048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600007;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 18719 19720 . + . ID=Physo138048;Parent=Physo138048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 18719 18864 . + . ID=Physo138048.1;Parent=Physo138048;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_60 . CDS 18776 18864 . + 0 ID=Physo138048;Parent=Physo138048;rank=1 scaffold_60 . CDS 18951 19154 . + 0 ID=Physo138048;Parent=Physo138048;rank=2 scaffold_60 . exon 18951 19154 . + . ID=Physo138048.2;Parent=Physo138048;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . CDS 19230 19668 . + 0 ID=Physo138048;Parent=Physo138048;rank=3 scaffold_60 . exon 19230 19720 . + . ID=Physo138048.3;Parent=Physo138048;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_60 . biological_region 20539 20544 0.999 - . logic_name=eponine scaffold_60 . biological_region 22300 22304 0.999 + . logic_name=eponine scaffold_60 . repeat_region 22674 22710 . ? . description=trf scaffold_60 . repeat_region 25820 25869 . ? . description=dust scaffold_60 . repeat_region 27327 27363 . ? . description=trf scaffold_60 ensembl protein_coding_gene 21109 22803 . + . ID=Physo109096;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600002;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 21109 22803 . + . ID=Physo109096;Parent=Physo109096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 21109 21162 . + 0 ID=Physo109096;Parent=Physo109096;rank=1 scaffold_60 . exon 21109 21162 . + . ID=Physo109096.1;Parent=Physo109096;constitutive=1;rank=1 scaffold_60 . CDS 21187 22503 . + 0 ID=Physo109096;Parent=Physo109096;rank=2 scaffold_60 . exon 21187 22803 . + . ID=Physo109096.2;Parent=Physo109096;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_60 ensembl protein_coding_gene 27724 30150 . - . ID=Physo109097;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600003;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 27724 30150 . - . ID=Physo109097;Parent=Physo109097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 27724 29569 . - . ID=Physo109097.2;Parent=Physo109097;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_60 . CDS 27893 29569 . - 0 ID=Physo109097;Parent=Physo109097;rank=2 scaffold_60 . CDS 29593 30150 . - 0 ID=Physo109097;Parent=Physo109097;rank=1 scaffold_60 . exon 29593 30150 . - . ID=Physo109097.1;Parent=Physo109097;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 22901 23920 . + . ID=Physo138050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600009;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 22901 23920 . + . ID=Physo138050;Parent=Physo138050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 22901 23920 . + 0 ID=Physo138050;Parent=Physo138050;rank=1 scaffold_60 . exon 22901 23920 . + . ID=Physo138050.1;Parent=Physo138050;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 26308 26952 . + . ID=Physo138051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600010;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 26308 26952 . + . ID=Physo138051;Parent=Physo138051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 26308 26952 . + 0 ID=Physo138051;Parent=Physo138051;rank=1 scaffold_60 . exon 26308 26952 . + . ID=Physo138051.1;Parent=Physo138051;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 31098 32870 . - . ID=Physo109098;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600004;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 31098 32870 . - . ID=Physo109098;Parent=Physo109098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 31098 32870 . - . ID=Physo109098.1;Parent=Physo109098;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_60 . CDS 31167 32870 . - 0 ID=Physo109098;Parent=Physo109098;rank=1 scaffold_60 ensembl protein_coding_gene 36975 38892 . - . ID=Physo119144;biotype=protein_coding;external_name=estExt_Genewise1.C_600062;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 36975 38892 . - . ID=Physo119144;Parent=Physo119144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 36975 38892 . - . ID=Physo119144.1;Parent=Physo119144;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 37044 38747 . - 0 ID=Physo119144;Parent=Physo119144;rank=1 scaffold_60 ensembl protein_coding_gene 35324 36027 . - . ID=Physo138054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600013;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 35324 36027 . - . ID=Physo138054;Parent=Physo138054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 35324 35332 . - 0 ID=Physo138054;Parent=Physo138054;rank=2 scaffold_60 . exon 35324 35332 . - . ID=Physo138054.2;Parent=Physo138054;constitutive=1;rank=2 scaffold_60 . CDS 35620 36027 . - 0 ID=Physo138054;Parent=Physo138054;rank=1 scaffold_60 . exon 35620 36027 . - . ID=Physo138054.1;Parent=Physo138054;constitutive=1;rank=1 scaffold_60 . biological_region 39580 39585 0.999 - . logic_name=eponine scaffold_60 . biological_region 41284 41285 0.999 + . logic_name=eponine scaffold_60 . biological_region 43843 43847 0.999 + . logic_name=eponine scaffold_60 . biological_region 43895 43895 0.999 - . logic_name=eponine scaffold_60 . biological_region 43999 44002 0.999 - . logic_name=eponine scaffold_60 . repeat_region 44184 44270 . ? . description=trf scaffold_60 . repeat_region 44278 44311 . ? . description=trf scaffold_60 . repeat_region 44444 44465 . ? . description=trf scaffold_60 . biological_region 44826 44826 0.999 + . logic_name=eponine scaffold_60 . repeat_region 45340 45389 . ? . description=dust scaffold_60 . repeat_region 45342 45389 . ? . description=trf scaffold_60 . repeat_region 45342 45429 . + . description=(GCTTG)n scaffold_60 . repeat_region 45359 45395 . ? . description=trf scaffold_60 . biological_region 46126 46129 0.999 - . logic_name=eponine scaffold_60 . biological_region 46202 46208 0.999 + . logic_name=eponine scaffold_60 . biological_region 46224 46228 0.999 + . logic_name=eponine scaffold_60 . repeat_region 46366 46406 . ? . description=trf scaffold_60 . repeat_region 46530 46745 . ? . description=dust scaffold_60 . biological_region 47300 47302 0.999 - . logic_name=eponine scaffold_60 . biological_region 47468 47469 0.999 - . logic_name=eponine scaffold_60 . repeat_region 47484 47570 . ? . description=trf scaffold_60 . repeat_region 47663 47712 . ? . description=dust scaffold_60 . repeat_region 47737 47864 . ? . description=trf scaffold_60 . repeat_region 47769 47843 . ? . description=trf scaffold_60 . biological_region 48047 48049 0.999 + . logic_name=eponine scaffold_60 . repeat_region 49006 49013 . ? . description=dust scaffold_60 . repeat_region 49311 49349 . ? . description=trf scaffold_60 ensembl protein_coding_gene 42185 43108 . + . ID=Physo138056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600015;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 42185 43108 . + . ID=Physo138056;Parent=Physo138056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 42185 42421 . + 0 ID=Physo138056;Parent=Physo138056;rank=1 scaffold_60 . exon 42185 42421 . + . ID=Physo138056.1;Parent=Physo138056;constitutive=1;rank=1 scaffold_60 . CDS 42497 43108 . + 0 ID=Physo138056;Parent=Physo138056;rank=2 scaffold_60 . exon 42497 43108 . + . ID=Physo138056.2;Parent=Physo138056;constitutive=1;rank=2 scaffold_60 ensembl protein_coding_gene 43889 44605 . - . ID=Physo138057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600016;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 43889 44605 . - . ID=Physo138057;Parent=Physo138057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 43889 44605 . - 0 ID=Physo138057;Parent=Physo138057;rank=1 scaffold_60 . exon 43889 44605 . - . ID=Physo138057.1;Parent=Physo138057;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 45805 46393 . - . ID=Physo138058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600017;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 45805 46393 . - . ID=Physo138058;Parent=Physo138058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 45805 46126 . - 0 ID=Physo138058;Parent=Physo138058;rank=2 scaffold_60 . exon 45805 46126 . - . ID=Physo138058.2;Parent=Physo138058;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 46281 46393 . - 0 ID=Physo138058;Parent=Physo138058;rank=1 scaffold_60 . exon 46281 46393 . - . ID=Physo138058.1;Parent=Physo138058;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 46996 48159 . + . ID=Physo138059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600018;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 46996 48159 . + . ID=Physo138059;Parent=Physo138059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 46996 47010 . + 0 ID=Physo138059;Parent=Physo138059;rank=1 scaffold_60 . exon 46996 47010 . + . ID=Physo138059.1;Parent=Physo138059;constitutive=1;rank=1 scaffold_60 . CDS 47202 47518 . + 0 ID=Physo138059;Parent=Physo138059;rank=2 scaffold_60 . exon 47202 47518 . + . ID=Physo138059.2;Parent=Physo138059;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_60 . CDS 47775 48159 . + 0 ID=Physo138059;Parent=Physo138059;rank=3 scaffold_60 . exon 47775 48159 . + . ID=Physo138059.3;Parent=Physo138059;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 ensembl protein_coding_gene 49581 50714 . - . ID=Physo138060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600019;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 49581 50714 . - . ID=Physo138060;Parent=Physo138060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 49581 50281 . - . ID=Physo138060.3;Parent=Physo138060;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_60 . CDS 49804 50281 . - 0 ID=Physo138060;Parent=Physo138060;rank=3 scaffold_60 . CDS 50363 50472 . - 0 ID=Physo138060;Parent=Physo138060;rank=2 scaffold_60 . exon 50363 50472 . - . ID=Physo138060.2;Parent=Physo138060;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_60 . CDS 50549 50641 . - 0 ID=Physo138060;Parent=Physo138060;rank=1 scaffold_60 . exon 50549 50714 . - . ID=Physo138060.1;Parent=Physo138060;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 56832 57525 . + . ID=Physo138063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600022;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 56832 57525 . + . ID=Physo138063;Parent=Physo138063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 56832 56885 . + . ID=Physo138063.1;Parent=Physo138063;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 56834 56885 . + 0 ID=Physo138063;Parent=Physo138063;rank=1 scaffold_60 . CDS 56984 57456 . + 0 ID=Physo138063;Parent=Physo138063;rank=2 scaffold_60 . exon 56984 57525 . + . ID=Physo138063.2;Parent=Physo138063;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 50889 51434 . + . ID=Physo157751;biotype=protein_coding;external_name=C_scaffold_60000002;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 50889 51434 . + . ID=Physo157751;Parent=Physo157751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 50889 50959 . + 0 ID=Physo157751;Parent=Physo157751;rank=1 scaffold_60 . exon 50889 50959 . + . ID=Physo157751.1;Parent=Physo157751;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 51101 51434 . + 0 ID=Physo157751;Parent=Physo157751;rank=2 scaffold_60 . exon 51101 51434 . + . ID=Physo157751.2;Parent=Physo157751;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 ensembl protein_coding_gene 51554 53593 . - . ID=Physo157752;biotype=protein_coding;external_name=C_scaffold_60000003;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 51554 53593 . - . ID=Physo157752;Parent=Physo157752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 51554 52364 . - 0 ID=Physo157752;Parent=Physo157752;rank=4 scaffold_60 . exon 51554 52364 . - . ID=Physo157752.4;Parent=Physo157752;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 52626 52711 . - 0 ID=Physo157752;Parent=Physo157752;rank=3 scaffold_60 . exon 52626 52711 . - . ID=Physo157752.3;Parent=Physo157752;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_60 . CDS 52910 53179 . - 0 ID=Physo157752;Parent=Physo157752;rank=2 scaffold_60 . exon 52910 53179 . - . ID=Physo157752.2;Parent=Physo157752;constitutive=1;rank=2 scaffold_60 . CDS 53225 53593 . - 0 ID=Physo157752;Parent=Physo157752;rank=1 scaffold_60 . exon 53225 53593 . - . ID=Physo157752.1;Parent=Physo157752;constitutive=1;rank=1 scaffold_60 . biological_region 59814 59820 0.999 + . logic_name=eponine scaffold_60 . biological_region 61379 61385 0.999 + . logic_name=eponine scaffold_60 . biological_region 63949 63949 0.999 + . logic_name=eponine scaffold_60 . biological_region 64204 64205 0.999 + . logic_name=eponine scaffold_60 . biological_region 64212 64214 0.999 - . logic_name=eponine scaffold_60 . biological_region 65720 65720 0.999 + . logic_name=eponine scaffold_60 . biological_region 66006 66008 0.999 + . logic_name=eponine scaffold_60 . biological_region 68885 68887 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 59229 60317 . + . ID=Physo109099;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600005;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 59229 60317 . + . ID=Physo109099;Parent=Physo109099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 59229 60317 . + . ID=Physo109099.1;Parent=Physo109099;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 59243 60184 . + 0 ID=Physo109099;Parent=Physo109099;rank=1 scaffold_60 ensembl protein_coding_gene 62129 62776 . - . ID=Physo109100;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600006;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 62129 62776 . - . ID=Physo109100;Parent=Physo109100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 62129 62594 . - . ID=Physo109100.2;Parent=Physo109100;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_60 . CDS 62227 62594 . - 0 ID=Physo109100;Parent=Physo109100;rank=2 scaffold_60 . CDS 62670 62772 . - 0 ID=Physo109100;Parent=Physo109100;rank=1 scaffold_60 . exon 62670 62776 . - . ID=Physo109100.1;Parent=Physo109100;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 60457 62100 . + . ID=Physo138065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600024;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 60457 62100 . + . ID=Physo138065;Parent=Physo138065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 60457 62100 . + 0 ID=Physo138065;Parent=Physo138065;rank=1 scaffold_60 . exon 60457 62100 . + . ID=Physo138065.1;Parent=Physo138065;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 65661 67895 . + . ID=Physo138067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600026;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 65661 67895 . + . ID=Physo138067;Parent=Physo138067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 65661 67895 . + 0 ID=Physo138067;Parent=Physo138067;rank=1 scaffold_60 . exon 65661 67895 . + . ID=Physo138067.1;Parent=Physo138067;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 68080 70446 . - . ID=Physo138068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600027;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 68080 70446 . - . ID=Physo138068;Parent=Physo138068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 68080 70446 . - 0 ID=Physo138068;Parent=Physo138068;rank=1 scaffold_60 . exon 68080 70446 . - . ID=Physo138068.1;Parent=Physo138068;constitutive=1;rank=1 scaffold_60 . repeat_region 70826 70854 . ? . description=trf scaffold_60 . repeat_region 72087 72174 . - . description=Sola3-2_PS scaffold_60 . repeat_region 72405 72522 . ? . description=trf scaffold_60 . repeat_region 73248 73301 . ? . description=trf scaffold_60 . repeat_region 73921 73986 . ? . description=trf scaffold_60 . repeat_region 75145 75152 . ? . description=dust scaffold_60 . repeat_region 75705 75718 . ? . description=dust scaffold_60 . repeat_region 77006 77108 . ? . description=trf scaffold_60 . repeat_region 77007 77108 . ? . description=trf scaffold_60 . repeat_region 77219 77280 . ? . description=trf scaffold_60 ensembl protein_coding_gene 73809 75162 . + . ID=Physo138069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600028;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 73809 75162 . + . ID=Physo138069;Parent=Physo138069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 73809 73896 . + 0 ID=Physo138069;Parent=Physo138069;rank=1 scaffold_60 . exon 73809 73896 . + . ID=Physo138069.1;Parent=Physo138069;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 74020 74231 . + 0 ID=Physo138069;Parent=Physo138069;rank=2 scaffold_60 . exon 74020 74231 . + . ID=Physo138069.2;Parent=Physo138069;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 74253 74435 . + 0 ID=Physo138069;Parent=Physo138069;rank=3 scaffold_60 . exon 74253 74435 . + . ID=Physo138069.3;Parent=Physo138069;constitutive=1;rank=3 scaffold_60 . CDS 74507 74705 . + 0 ID=Physo138069;Parent=Physo138069;rank=4 scaffold_60 . exon 74507 74705 . + . ID=Physo138069.4;Parent=Physo138069;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_60 . CDS 74765 75162 . + 0 ID=Physo138069;Parent=Physo138069;rank=5 scaffold_60 . exon 74765 75162 . + . ID=Physo138069.5;Parent=Physo138069;constitutive=1;ensembl_phase=1;rank=5 scaffold_60 . biological_region 80263 80267 0.999 - . logic_name=eponine scaffold_60 . biological_region 81192 81193 0.999 + . logic_name=eponine scaffold_60 . repeat_region 81788 82335 . + . description=GypsyPi-1c_I-int scaffold_60 . repeat_region 82967 85824 . + . description=GypsyPi-1c_I-int scaffold_60 . repeat_region 86320 86451 . + . description=GypsyPi-1c_I-int scaffold_60 . biological_region 87012 87016 0.999 - . logic_name=eponine scaffold_60 . biological_region 87035 87041 0.999 + . logic_name=eponine scaffold_60 . biological_region 87069 87076 0.999 + . logic_name=eponine scaffold_60 . biological_region 87088 87089 0.999 + . logic_name=eponine scaffold_60 . biological_region 87121 87127 0.999 - . logic_name=eponine scaffold_60 . biological_region 87546 87546 0.999 + . logic_name=eponine scaffold_60 . biological_region 87561 87563 0.999 - . logic_name=eponine scaffold_60 . biological_region 88119 88122 0.999 - . logic_name=eponine scaffold_60 . biological_region 88125 88130 0.999 - . logic_name=eponine scaffold_60 . biological_region 88147 88150 0.999 + . logic_name=eponine scaffold_60 . biological_region 88183 88185 0.999 + . logic_name=eponine scaffold_60 . biological_region 88200 88209 0.999 + . logic_name=eponine scaffold_60 . biological_region 88258 88260 0.999 - . logic_name=eponine scaffold_60 . biological_region 88292 88293 0.999 + . logic_name=eponine scaffold_60 . biological_region 88312 88318 0.999 + . logic_name=eponine scaffold_60 . biological_region 88325 88327 0.999 - . logic_name=eponine scaffold_60 . biological_region 88335 88344 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 80809 86398 . + . ID=Physo138070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600029;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 80809 86398 . + . ID=Physo138070;Parent=Physo138070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 80809 80918 . + 0 ID=Physo138070;Parent=Physo138070;rank=1 scaffold_60 . exon 80809 80918 . + . ID=Physo138070.1;Parent=Physo138070;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 80968 81502 . + 0 ID=Physo138070;Parent=Physo138070;rank=2 scaffold_60 . exon 80968 81502 . + . ID=Physo138070.2;Parent=Physo138070;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 81627 83062 . + 0 ID=Physo138070;Parent=Physo138070;rank=3 scaffold_60 . exon 81627 83062 . + . ID=Physo138070.3;Parent=Physo138070;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_60 . CDS 83475 84297 . + 0 ID=Physo138070;Parent=Physo138070;rank=4 scaffold_60 . exon 83475 84297 . + . ID=Physo138070.4;Parent=Physo138070;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 84387 84503 . + 0 ID=Physo138070;Parent=Physo138070;rank=5 scaffold_60 . exon 84387 84503 . + . ID=Physo138070.5;Parent=Physo138070;constitutive=1;rank=5 scaffold_60 . CDS 84538 85006 . + 0 ID=Physo138070;Parent=Physo138070;rank=6 scaffold_60 . exon 84538 85006 . + . ID=Physo138070.6;Parent=Physo138070;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_60 . CDS 85159 85515 . + 0 ID=Physo138070;Parent=Physo138070;rank=7 scaffold_60 . exon 85159 85515 . + . ID=Physo138070.7;Parent=Physo138070;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_60 . CDS 85681 86009 . + 0 ID=Physo138070;Parent=Physo138070;rank=8 scaffold_60 . exon 85681 86009 . + . ID=Physo138070.8;Parent=Physo138070;constitutive=1;ensembl_phase=1;rank=8 scaffold_60 . CDS 86075 86398 . + 0 ID=Physo138070;Parent=Physo138070;rank=9 scaffold_60 . exon 86075 86398 . + . ID=Physo138070.9;Parent=Physo138070;constitutive=1;rank=9 scaffold_60 . repeat_region 94419 94426 . ? . description=dust scaffold_60 . repeat_region 96640 96715 . ? . description=trf scaffold_60 . repeat_region 96817 96824 . ? . description=dust scaffold_60 . repeat_region 97437 97547 . ? . description=trf scaffold_60 . biological_region 101986 101988 0.999 - . logic_name=eponine scaffold_60 . biological_region 102514 102517 0.999 + . logic_name=eponine scaffold_60 . biological_region 104682 104686 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 101368 102860 . + . ID=Physo138071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600030;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 101368 102860 . + . ID=Physo138071;Parent=Physo138071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 101368 101472 . + 0 ID=Physo138071;Parent=Physo138071;rank=1 scaffold_60 . exon 101368 101472 . + . ID=Physo138071.1;Parent=Physo138071;constitutive=1;rank=1 scaffold_60 . CDS 101902 102203 . + 0 ID=Physo138071;Parent=Physo138071;rank=2 scaffold_60 . exon 101902 102203 . + . ID=Physo138071.2;Parent=Physo138071;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_60 . CDS 102268 102456 . + 0 ID=Physo138071;Parent=Physo138071;rank=3 scaffold_60 . exon 102268 102456 . + . ID=Physo138071.3;Parent=Physo138071;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_60 . CDS 102614 102635 . + 0 ID=Physo138071;Parent=Physo138071;rank=4 scaffold_60 . exon 102614 102635 . + . ID=Physo138071.4;Parent=Physo138071;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 102759 102772 . + 0 ID=Physo138071;Parent=Physo138071;rank=5 scaffold_60 . exon 102759 102772 . + . ID=Physo138071.5;Parent=Physo138071;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_60 . CDS 102854 102860 . + 0 ID=Physo138071;Parent=Physo138071;rank=6 scaffold_60 . exon 102854 102860 . + . ID=Physo138071.6;Parent=Physo138071;constitutive=1;ensembl_phase=2;rank=6 scaffold_60 ensembl protein_coding_gene 108139 109077 . - . ID=Physo138072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600031;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 108139 109077 . - . ID=Physo138072;Parent=Physo138072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 108139 108654 . - . ID=Physo138072.2;Parent=Physo138072;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_60 . CDS 108191 108654 . - 0 ID=Physo138072;Parent=Physo138072;rank=2 scaffold_60 . CDS 108738 109077 . - 0 ID=Physo138072;Parent=Physo138072;rank=1 scaffold_60 . repeat_region 108977 108984 . ? . description=dust scaffold_60 . repeat_region 112386 112440 . ? . description=trf scaffold_60 . repeat_region 112386 112467 . ? . description=dust scaffold_60 . repeat_region 112388 112476 . ? . description=trf scaffold_60 . repeat_region 112507 112567 . ? . description=dust scaffold_60 . repeat_region 112518 112538 . ? . description=trf scaffold_60 . repeat_region 112602 112677 . ? . description=dust scaffold_60 . repeat_region 112636 112676 . ? . description=trf scaffold_60 . exon 108738 109077 . - . ID=Physo138072.1;Parent=Physo138072;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 109648 110515 . - . ID=Physo138073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600032;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 109648 110515 . - . ID=Physo138073;Parent=Physo138073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 109648 109756 . - 0 ID=Physo138073;Parent=Physo138073;rank=3 scaffold_60 . exon 109648 109756 . - . ID=Physo138073.3;Parent=Physo138073;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 . CDS 109822 110028 . - 0 ID=Physo138073;Parent=Physo138073;rank=2 scaffold_60 . exon 109822 110028 . - . ID=Physo138073.2;Parent=Physo138073;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . CDS 110094 110515 . - 0 ID=Physo138073;Parent=Physo138073;rank=1 scaffold_60 . exon 110094 110515 . - . ID=Physo138073.1;Parent=Physo138073;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 110845 111604 . - . ID=Physo138074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600033;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 110845 111604 . - . ID=Physo138074;Parent=Physo138074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 110845 111604 . - . ID=Physo138074.1;Parent=Physo138074;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 110979 111482 . - 0 ID=Physo138074;Parent=Physo138074;rank=1 scaffold_60 ensembl protein_coding_gene 111903 114304 . + . ID=Physo138075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600034;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 111903 114304 . + . ID=Physo138075;Parent=Physo138075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 111903 114082 . + 0 ID=Physo138075;Parent=Physo138075;rank=1 scaffold_60 . exon 111903 114082 . + . ID=Physo138075.1;Parent=Physo138075;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 114160 114304 . + 0 ID=Physo138075;Parent=Physo138075;rank=2 scaffold_60 . exon 114160 114304 . + . ID=Physo138075.2;Parent=Physo138075;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 ensembl protein_coding_gene 114434 115292 . - . ID=Physo138076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600035;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 114434 115292 . - . ID=Physo138076;Parent=Physo138076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 114434 115006 . - 0 ID=Physo138076;Parent=Physo138076;rank=2 scaffold_60 . exon 114434 115006 . - . ID=Physo138076.2;Parent=Physo138076;constitutive=1;rank=2 scaffold_60 . CDS 115074 115292 . - 0 ID=Physo138076;Parent=Physo138076;rank=1 scaffold_60 . exon 115074 115292 . - . ID=Physo138076.1;Parent=Physo138076;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 115830 120892 . - . ID=Physo157753;biotype=protein_coding;external_name=C_scaffold_60000004;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 115830 120892 . - . ID=Physo157753;Parent=Physo157753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 115830 116555 . - 0 ID=Physo157753;Parent=Physo157753;rank=15 scaffold_60 . exon 115830 116555 . - . ID=Physo157753.15;Parent=Physo157753;constitutive=1;rank=15 scaffold_60 . CDS 116907 117727 . - 0 ID=Physo157753;Parent=Physo157753;rank=14 scaffold_60 . exon 116907 117727 . - . ID=Physo157753.14;Parent=Physo157753;constitutive=1;ensembl_phase=1;rank=14 scaffold_60 . CDS 118022 118531 . - 0 ID=Physo157753;Parent=Physo157753;rank=13 scaffold_60 . exon 118022 118531 . - . ID=Physo157753.13;Parent=Physo157753;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_60 . CDS 118589 118602 . - 0 ID=Physo157753;Parent=Physo157753;rank=12 scaffold_60 . CDS 118657 118794 . - 0 ID=Physo157753;Parent=Physo157753;rank=11 scaffold_60 . CDS 118875 118952 . - 0 ID=Physo157753;Parent=Physo157753;rank=10 scaffold_60 . CDS 119004 119084 . - 0 ID=Physo157753;Parent=Physo157753;rank=9 scaffold_60 . CDS 119179 119253 . - 0 ID=Physo157753;Parent=Physo157753;rank=8 scaffold_60 . CDS 119331 119543 . - 0 ID=Physo157753;Parent=Physo157753;rank=7 scaffold_60 . CDS 119622 119765 . - 0 ID=Physo157753;Parent=Physo157753;rank=6 scaffold_60 . CDS 119835 120047 . - 0 ID=Physo157753;Parent=Physo157753;rank=5 scaffold_60 . CDS 120118 120258 . - 0 ID=Physo157753;Parent=Physo157753;rank=4 scaffold_60 . CDS 120318 120392 . - 0 ID=Physo157753;Parent=Physo157753;rank=3 scaffold_60 . CDS 120472 120678 . - 0 ID=Physo157753;Parent=Physo157753;rank=2 scaffold_60 . CDS 120825 120892 . - 0 ID=Physo157753;Parent=Physo157753;rank=1 scaffold_60 . biological_region 122975 122976 0.999 - . logic_name=eponine scaffold_60 . biological_region 123933 123936 0.999 + . logic_name=eponine scaffold_60 . biological_region 126638 126639 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 125366 125885 . - . ID=Physo109102;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600008;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 125366 125885 . - . ID=Physo109102;Parent=Physo109102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 125366 125885 . - . ID=Physo109102.1;Parent=Physo109102;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_60 . CDS 125439 125885 . - 0 ID=Physo109102;Parent=Physo109102;rank=1 scaffold_60 ensembl protein_coding_gene 121065 122965 . + . ID=Physo138079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600038;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 121065 122965 . + . ID=Physo138079;Parent=Physo138079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 121065 121112 . + 0 ID=Physo138079;Parent=Physo138079;rank=1 scaffold_60 . exon 121065 121112 . + . ID=Physo138079.1;Parent=Physo138079;constitutive=1;rank=1 scaffold_60 . CDS 121220 121339 . + 0 ID=Physo138079;Parent=Physo138079;rank=2 scaffold_60 . exon 121220 121339 . + . ID=Physo138079.2;Parent=Physo138079;constitutive=1;rank=2 scaffold_60 . CDS 121428 121901 . + 0 ID=Physo138079;Parent=Physo138079;rank=3 scaffold_60 . exon 121428 121901 . + . ID=Physo138079.3;Parent=Physo138079;constitutive=1;rank=3 scaffold_60 . CDS 121968 122265 . + 0 ID=Physo138079;Parent=Physo138079;rank=4 scaffold_60 . exon 121968 122265 . + . ID=Physo138079.4;Parent=Physo138079;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_60 . CDS 122357 122415 . + 0 ID=Physo138079;Parent=Physo138079;rank=5 scaffold_60 . exon 122357 122415 . + . ID=Physo138079.5;Parent=Physo138079;constitutive=1;ensembl_phase=1;rank=5 scaffold_60 . CDS 122531 122965 . + 0 ID=Physo138079;Parent=Physo138079;rank=6 scaffold_60 . exon 122531 122965 . + . ID=Physo138079.6;Parent=Physo138079;constitutive=1;rank=6 scaffold_60 ensembl protein_coding_gene 124732 125064 . + . ID=Physo138080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600039;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 124732 125064 . + . ID=Physo138080;Parent=Physo138080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 124732 125064 . + 0 ID=Physo138080;Parent=Physo138080;rank=1 scaffold_60 . exon 124732 125064 . + . ID=Physo138080.1;Parent=Physo138080;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 126051 127097 . - . ID=Physo138082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600041;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 126051 127097 . - . ID=Physo138082;Parent=Physo138082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 126051 127049 . - 0 ID=Physo138082;Parent=Physo138082;rank=1 scaffold_60 . exon 126051 127097 . - . ID=Physo138082.1;Parent=Physo138082;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . exon 118589 118602 . - . ID=Physo157753.12;Parent=Physo157753;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_60 . exon 118657 118794 . - . ID=Physo157753.11;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_60 . exon 118875 118952 . - . ID=Physo157753.10;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_60 . exon 119004 119084 . - . ID=Physo157753.9;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_60 . exon 119179 119253 . - . ID=Physo157753.8;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_60 . exon 119331 119543 . - . ID=Physo157753.7;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_60 . exon 119622 119765 . - . ID=Physo157753.6;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_60 . exon 119835 120047 . - . ID=Physo157753.5;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_60 . exon 120118 120258 . - . ID=Physo157753.4;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_60 . exon 120318 120392 . - . ID=Physo157753.3;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_60 . exon 120472 120678 . - . ID=Physo157753.2;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . exon 120825 120892 . - . ID=Physo157753.1;Parent=Physo157753;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . repeat_region 134309 134340 . ? . description=trf scaffold_60 . repeat_region 134309 134344 . ? . description=dust scaffold_60 . repeat_region 134671 134679 . ? . description=dust scaffold_60 . repeat_region 137498 137545 . ? . description=trf scaffold_60 . repeat_region 137979 138008 . ? . description=trf scaffold_60 . biological_region 144378 144382 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 143952 145397 . + . ID=Physo109103;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600009;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 143952 145397 . + . ID=Physo109103;Parent=Physo109103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 143952 145397 . + 0 ID=Physo109103;Parent=Physo109103;rank=1 scaffold_60 . exon 143952 145397 . + . ID=Physo109103.1;Parent=Physo109103;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 146950 148409 . + . ID=Physo138085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600044;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 146950 148409 . + . ID=Physo138085;Parent=Physo138085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 146950 148224 . + 0 ID=Physo138085;Parent=Physo138085;rank=1 scaffold_60 . exon 146950 148409 . + . ID=Physo138085.1;Parent=Physo138085;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 148570 150033 . - . ID=Physo138086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600045;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 148570 150033 . - . ID=Physo138086;Parent=Physo138086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 148570 150033 . - 0 ID=Physo138086;Parent=Physo138086;rank=1 scaffold_60 . exon 148570 150033 . - . ID=Physo138086.1;Parent=Physo138086;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 150696 156422 . - . ID=Physo138087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600046;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 150696 156422 . - . ID=Physo138087;Parent=Physo138087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 150696 152023 . - 0 ID=Physo138087;Parent=Physo138087;rank=11 scaffold_60 . exon 150696 152023 . - . ID=Physo138087.11;Parent=Physo138087;constitutive=1;ensembl_phase=1;rank=11 scaffold_60 . CDS 152090 152259 . - 0 ID=Physo138087;Parent=Physo138087;rank=10 scaffold_60 . exon 152090 152259 . - . ID=Physo138087.10;Parent=Physo138087;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_60 . CDS 152331 152396 . - 0 ID=Physo138087;Parent=Physo138087;rank=9 scaffold_60 . exon 152331 152396 . - . ID=Physo138087.9;Parent=Physo138087;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_60 . CDS 152467 152667 . - 0 ID=Physo138087;Parent=Physo138087;rank=8 scaffold_60 . exon 152467 152667 . - . ID=Physo138087.8;Parent=Physo138087;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_60 . CDS 152775 152840 . - 0 ID=Physo138087;Parent=Physo138087;rank=7 scaffold_60 . exon 152775 152840 . - . ID=Physo138087.7;Parent=Physo138087;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_60 . CDS 152910 152969 . - 0 ID=Physo138087;Parent=Physo138087;rank=6 scaffold_60 . exon 152910 152969 . - . ID=Physo138087.6;Parent=Physo138087;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_60 . CDS 153040 153379 . - 0 ID=Physo138087;Parent=Physo138087;rank=5 scaffold_60 . exon 153040 153379 . - . ID=Physo138087.5;Parent=Physo138087;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_60 . CDS 153497 153518 . - 0 ID=Physo138087;Parent=Physo138087;rank=4 scaffold_60 . exon 153497 153518 . - . ID=Physo138087.4;Parent=Physo138087;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_60 . CDS 153730 155761 . - 0 ID=Physo138087;Parent=Physo138087;rank=3 scaffold_60 . exon 153730 155761 . - . ID=Physo138087.3;Parent=Physo138087;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 . CDS 155824 155889 . - 0 ID=Physo138087;Parent=Physo138087;rank=2 scaffold_60 . exon 155824 155889 . - . ID=Physo138087.2;Parent=Physo138087;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . CDS 155960 156312 . - 0 ID=Physo138087;Parent=Physo138087;rank=1 scaffold_60 . exon 155960 156422 . - . ID=Physo138087.1;Parent=Physo138087;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 156858 159390 . - . ID=Physo138088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600047;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 156858 159390 . - . ID=Physo138088;Parent=Physo138088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 156858 158706 . - 0 ID=Physo138088;Parent=Physo138088;rank=4 scaffold_60 . exon 156858 158706 . - . ID=Physo138088.4;Parent=Physo138088;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 158779 158844 . - 0 ID=Physo138088;Parent=Physo138088;rank=3 scaffold_60 . CDS 158915 158977 . - 0 ID=Physo138088;Parent=Physo138088;rank=2 scaffold_60 . CDS 159050 159390 . - 0 ID=Physo138088;Parent=Physo138088;rank=1 scaffold_60 . biological_region 159176 159180 0.999 + . logic_name=eponine scaffold_60 . biological_region 159195 159198 0.999 + . logic_name=eponine scaffold_60 . biological_region 161516 161516 0.999 - . logic_name=eponine scaffold_60 . biological_region 162995 162996 0.999 + . logic_name=eponine scaffold_60 . repeat_region 163117 163126 . ? . description=dust scaffold_60 . repeat_region 163148 163177 . ? . description=trf scaffold_60 . biological_region 163268 163270 0.999 + . logic_name=eponine scaffold_60 . biological_region 163308 163314 0.999 + . logic_name=eponine scaffold_60 . biological_region 163436 163440 0.999 - . logic_name=eponine scaffold_60 . repeat_region 163620 163645 . ? . description=trf scaffold_60 . biological_region 165748 165751 0.999 + . logic_name=eponine scaffold_60 . biological_region 165866 165871 0.999 - . logic_name=eponine scaffold_60 . biological_region 167203 167206 0.999 + . logic_name=eponine scaffold_60 . exon 158779 158844 . - . ID=Physo138088.3;Parent=Physo138088;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_60 . exon 158915 158977 . - . ID=Physo138088.2;Parent=Physo138088;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . exon 159050 159390 . - . ID=Physo138088.1;Parent=Physo138088;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 160716 163543 . - . ID=Physo138089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600048;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 160716 163543 . - . ID=Physo138089;Parent=Physo138089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 160716 161320 . - 0 ID=Physo138089;Parent=Physo138089;rank=3 scaffold_60 . exon 160716 161320 . - . ID=Physo138089.3;Parent=Physo138089;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 161487 163080 . - 0 ID=Physo138089;Parent=Physo138089;rank=2 scaffold_60 . exon 161487 163080 . - . ID=Physo138089.2;Parent=Physo138089;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 163262 163543 . - 0 ID=Physo138089;Parent=Physo138089;rank=1 scaffold_60 . exon 163262 163543 . - . ID=Physo138089.1;Parent=Physo138089;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 165546 165980 . + . ID=Physo138090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600049;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 165546 165980 . + . ID=Physo138090;Parent=Physo138090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 165546 165980 . + . ID=Physo138090.1;Parent=Physo138090;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 165606 165980 . + 0 ID=Physo138090;Parent=Physo138090;rank=1 scaffold_60 ensembl protein_coding_gene 166763 167776 . - . ID=Physo138091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600050;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 166763 167776 . - . ID=Physo138091;Parent=Physo138091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 166763 167572 . - . ID=Physo138091.2;Parent=Physo138091;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_60 . CDS 166818 167572 . - 0 ID=Physo138091;Parent=Physo138091;rank=2 scaffold_60 . CDS 167653 167776 . - 0 ID=Physo138091;Parent=Physo138091;rank=1 scaffold_60 . exon 167653 167776 . - . ID=Physo138091.1;Parent=Physo138091;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 168566 169579 . + . ID=Physo138092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600051;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 168566 169579 . + . ID=Physo138092;Parent=Physo138092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 168566 168689 . + 0 ID=Physo138092;Parent=Physo138092;rank=1 scaffold_60 . exon 168566 168689 . + . ID=Physo138092.1;Parent=Physo138092;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 168770 169524 . + 0 ID=Physo138092;Parent=Physo138092;rank=2 scaffold_60 . exon 168770 169579 . + . ID=Physo138092.2;Parent=Physo138092;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 170504 171168 . + . ID=Physo138093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600052;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 170504 171168 . + . ID=Physo138093;Parent=Physo138093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 170504 170588 . + 0 ID=Physo138093;Parent=Physo138093;rank=1 scaffold_60 . exon 170504 170588 . + . ID=Physo138093.1;Parent=Physo138093;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 170651 170704 . + 0 ID=Physo138093;Parent=Physo138093;rank=2 scaffold_60 . exon 170651 170704 . + . ID=Physo138093.2;Parent=Physo138093;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 170738 171046 . + 0 ID=Physo138093;Parent=Physo138093;rank=3 scaffold_60 . exon 170738 171046 . + . ID=Physo138093.3;Parent=Physo138093;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 171107 171168 . + 0 ID=Physo138093;Parent=Physo138093;rank=4 scaffold_60 . exon 171107 171168 . + . ID=Physo138093.4;Parent=Physo138093;constitutive=1;ensembl_phase=1;rank=4 scaffold_60 . repeat_region 177674 177710 . ? . description=trf scaffold_60 . repeat_region 178443 178474 . ? . description=trf scaffold_60 . biological_region 178805 178805 0.999 - . logic_name=eponine scaffold_60 . repeat_region 179194 179281 . ? . description=trf scaffold_60 . repeat_region 179658 179779 . ? . description=dust scaffold_60 . repeat_region 180398 180407 . ? . description=dust scaffold_60 . repeat_region 180816 181024 . ? . description=dust scaffold_60 . biological_region 181769 181770 0.999 + . logic_name=eponine scaffold_60 . biological_region 181792 181792 0.999 - . logic_name=eponine scaffold_60 . repeat_region 182787 182795 . ? . description=dust scaffold_60 . repeat_region 183781 183816 . ? . description=trf scaffold_60 . repeat_region 187355 187412 . ? . description=trf scaffold_60 ensembl protein_coding_gene 179783 180199 . - . ID=Physo109104;biotype=protein_coding;description=PsAvh1 [Source:UniProtKB/TrEMBL%3BAcc:E0W5B3];external_name=AVH1B;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 179783 180199 . - . ID=Physo109104;Parent=Physo109104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 179783 180199 . - 0 ID=Physo109104;Parent=Physo109104;rank=1 scaffold_60 . exon 179783 180199 . - . ID=Physo109104.1;Parent=Physo109104;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 177706 178821 . + . ID=Physo138094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600053;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 177706 178821 . + . ID=Physo138094;Parent=Physo138094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 177706 177724 . + 0 ID=Physo138094;Parent=Physo138094;rank=1 scaffold_60 . exon 177706 177724 . + . ID=Physo138094.1;Parent=Physo138094;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 178454 178821 . + 0 ID=Physo138094;Parent=Physo138094;rank=2 scaffold_60 . exon 178454 178821 . + . ID=Physo138094.2;Parent=Physo138094;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . repeat_region 188325 189210 . + . description=GypsyPi-1c_I-int scaffold_60 ensembl protein_coding_gene 188109 189113 . + . ID=Physo138096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600055;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 188109 189113 . + . ID=Physo138096;Parent=Physo138096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 188109 188388 . + 0 ID=Physo138096;Parent=Physo138096;rank=1 scaffold_60 . exon 188109 188388 . + . ID=Physo138096.1;Parent=Physo138096;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 188500 189113 . + 0 ID=Physo138096;Parent=Physo138096;rank=2 scaffold_60 . exon 188500 189113 . + . ID=Physo138096.2;Parent=Physo138096;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 190267 192496 . + . ID=Physo138097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600056;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 190267 192496 . + . ID=Physo138097;Parent=Physo138097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 190267 190678 . + 0 ID=Physo138097;Parent=Physo138097;rank=1 scaffold_60 . exon 190267 190678 . + . ID=Physo138097.1;Parent=Physo138097;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 190818 191054 . + 0 ID=Physo138097;Parent=Physo138097;rank=2 scaffold_60 . exon 190818 191054 . + . ID=Physo138097.2;Parent=Physo138097;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 191115 192496 . + 0 ID=Physo138097;Parent=Physo138097;rank=3 scaffold_60 . exon 191115 192496 . + . ID=Physo138097.3;Parent=Physo138097;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 ensembl protein_coding_gene 194080 197765 . + . ID=Physo138098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600057;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 194080 197765 . + . ID=Physo138098;Parent=Physo138098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 194080 195155 . + 0 ID=Physo138098;Parent=Physo138098;rank=1 scaffold_60 . exon 194080 195155 . + . ID=Physo138098.1;Parent=Physo138098;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 195183 195759 . + 0 ID=Physo138098;Parent=Physo138098;rank=2 scaffold_60 . exon 195183 195759 . + . ID=Physo138098.2;Parent=Physo138098;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 195782 196057 . + 0 ID=Physo138098;Parent=Physo138098;rank=3 scaffold_60 . exon 195782 196057 . + . ID=Physo138098.3;Parent=Physo138098;constitutive=1;rank=3 scaffold_60 . CDS 196112 196351 . + 0 ID=Physo138098;Parent=Physo138098;rank=4 scaffold_60 . exon 196112 196351 . + . ID=Physo138098.4;Parent=Physo138098;constitutive=1;rank=4 scaffold_60 . CDS 196589 197008 . + 0 ID=Physo138098;Parent=Physo138098;rank=5 scaffold_60 . exon 196589 197008 . + . ID=Physo138098.5;Parent=Physo138098;constitutive=1;rank=5 scaffold_60 . CDS 197220 197765 . + 0 ID=Physo138098;Parent=Physo138098;rank=6 scaffold_60 . exon 197220 197765 . + . ID=Physo138098.6;Parent=Physo138098;constitutive=1;rank=6 scaffold_60 . repeat_region 197775 197789 . ? . description=dust scaffold_60 . biological_region 197953 197958 0.999 + . logic_name=eponine scaffold_60 . biological_region 198050 198053 0.999 + . logic_name=eponine scaffold_60 . biological_region 198078 198081 0.999 - . logic_name=eponine scaffold_60 . biological_region 198092 198094 0.999 + . logic_name=eponine scaffold_60 . repeat_region 200779 200822 . ? . description=trf scaffold_60 . biological_region 201436 201436 0.999 - . logic_name=eponine scaffold_60 . biological_region 204283 204283 0.999 + . logic_name=eponine scaffold_60 . biological_region 204441 204448 0.999 - . logic_name=eponine scaffold_60 . biological_region 204461 204464 0.999 - . logic_name=eponine scaffold_60 . repeat_region 207058 207113 . ? . description=trf scaffold_60 . repeat_region 207065 207099 . ? . description=trf scaffold_60 . repeat_region 207092 207128 . ? . description=trf scaffold_60 . repeat_region 207113 207154 . ? . description=trf scaffold_60 . repeat_region 207161 207234 . ? . description=trf scaffold_60 . repeat_region 207161 207254 . ? . description=dust scaffold_60 . repeat_region 207182 207255 . ? . description=trf scaffold_60 . biological_region 207231 207235 0.999 - . logic_name=eponine scaffold_60 . biological_region 207257 207263 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 198513 200224 . - . ID=Physo138099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600058;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 198513 200224 . - . ID=Physo138099;Parent=Physo138099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 198513 199183 . - 0 ID=Physo138099;Parent=Physo138099;rank=4 scaffold_60 . exon 198513 199183 . - . ID=Physo138099.4;Parent=Physo138099;constitutive=1;ensembl_phase=1;rank=4 scaffold_60 . CDS 199378 199809 . - 0 ID=Physo138099;Parent=Physo138099;rank=3 scaffold_60 . exon 199378 199809 . - . ID=Physo138099.3;Parent=Physo138099;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 199878 200066 . - 0 ID=Physo138099;Parent=Physo138099;rank=2 scaffold_60 . exon 199878 200066 . - . ID=Physo138099.2;Parent=Physo138099;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 200128 200224 . - 0 ID=Physo138099;Parent=Physo138099;rank=1 scaffold_60 . exon 200128 200224 . - . ID=Physo138099.1;Parent=Physo138099;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 201728 204415 . - . ID=Physo138100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600059;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 201728 204415 . - . ID=Physo138100;Parent=Physo138100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 201728 204415 . - 0 ID=Physo138100;Parent=Physo138100;rank=1 scaffold_60 . exon 201728 204415 . - . ID=Physo138100.1;Parent=Physo138100;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 207559 209101 . - . ID=Physo138101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600060;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 207559 209101 . - . ID=Physo138101;Parent=Physo138101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 207559 208842 . - 0 ID=Physo138101;Parent=Physo138101;rank=1 scaffold_60 . exon 207559 209101 . - . ID=Physo138101.1;Parent=Physo138101;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 210460 213464 . + . ID=Physo138102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600061;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 210460 213464 . + . ID=Physo138102;Parent=Physo138102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 210460 210856 . + 0 ID=Physo138102;Parent=Physo138102;rank=1 scaffold_60 . exon 210460 210856 . + . ID=Physo138102.1;Parent=Physo138102;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 210907 212440 . + 0 ID=Physo138102;Parent=Physo138102;rank=2 scaffold_60 . exon 210907 212440 . + . ID=Physo138102.2;Parent=Physo138102;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_60 . CDS 212570 213464 . + 0 ID=Physo138102;Parent=Physo138102;rank=3 scaffold_60 . exon 212570 213464 . + . ID=Physo138102.3;Parent=Physo138102;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 ensembl protein_coding_gene 216263 223614 . - . ID=Physo138103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600062;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 216263 223614 . - . ID=Physo138103;Parent=Physo138103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 216263 218099 . - 0 ID=Physo138103;Parent=Physo138103;rank=9 scaffold_60 . exon 216263 218099 . - . ID=Physo138103.9;Parent=Physo138103;constitutive=1;ensembl_phase=2;rank=9 scaffold_60 . CDS 218517 218949 . - 0 ID=Physo138103;Parent=Physo138103;rank=8 scaffold_60 . CDS 219009 219109 . - 0 ID=Physo138103;Parent=Physo138103;rank=7 scaffold_60 . CDS 219207 219234 . - 0 ID=Physo138103;Parent=Physo138103;rank=6 scaffold_60 . CDS 219276 219452 . - 0 ID=Physo138103;Parent=Physo138103;rank=5 scaffold_60 . CDS 219588 220559 . - 0 ID=Physo138103;Parent=Physo138103;rank=4 scaffold_60 . CDS 220634 221857 . - 0 ID=Physo138103;Parent=Physo138103;rank=3 scaffold_60 . CDS 222057 222393 . - 0 ID=Physo138103;Parent=Physo138103;rank=2 scaffold_60 . CDS 222463 223614 . - 0 ID=Physo138103;Parent=Physo138103;rank=1 scaffold_60 . biological_region 219871 219871 0.999 + . logic_name=eponine scaffold_60 . biological_region 221272 221278 0.999 + . logic_name=eponine scaffold_60 . biological_region 221306 221308 0.999 - . logic_name=eponine scaffold_60 . biological_region 221532 221536 0.999 + . logic_name=eponine scaffold_60 . biological_region 221636 221644 0.999 + . logic_name=eponine scaffold_60 . biological_region 221904 221905 0.999 + . logic_name=eponine scaffold_60 . biological_region 222089 222093 0.999 + . logic_name=eponine scaffold_60 . biological_region 222130 222132 0.999 + . logic_name=eponine scaffold_60 . biological_region 222195 222195 0.999 + . logic_name=eponine scaffold_60 . repeat_region 225010 225027 . ? . description=dust scaffold_60 . biological_region 226774 226775 0.999 + . logic_name=eponine scaffold_60 . exon 218517 218949 . - . ID=Physo138103.8;Parent=Physo138103;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_60 . exon 219009 219109 . - . ID=Physo138103.7;Parent=Physo138103;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_60 . exon 219207 219234 . - . ID=Physo138103.6;Parent=Physo138103;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_60 . exon 219276 219452 . - . ID=Physo138103.5;Parent=Physo138103;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_60 . exon 219588 220559 . - . ID=Physo138103.4;Parent=Physo138103;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_60 . exon 220634 221857 . - . ID=Physo138103.3;Parent=Physo138103;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_60 . exon 222057 222393 . - . ID=Physo138103.2;Parent=Physo138103;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . exon 222463 223614 . - . ID=Physo138103.1;Parent=Physo138103;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 226594 227064 . - . ID=Physo138104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600063;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 226594 227064 . - . ID=Physo138104;Parent=Physo138104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 226594 227064 . - 0 ID=Physo138104;Parent=Physo138104;rank=1 scaffold_60 . exon 226594 227064 . - . ID=Physo138104.1;Parent=Physo138104;constitutive=1;rank=1 scaffold_60 . repeat_region 229153 230843 . - . description=GypsyPi-1c_I-int scaffold_60 . repeat_region 231394 231592 . - . description=GypsyPi-1c_I-int scaffold_60 . repeat_region 231688 231805 . - . description=GypsyPi-1c_I-int scaffold_60 ensembl protein_coding_gene 229078 230262 . - . ID=Physo138105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600064;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 229078 230262 . - . ID=Physo138105;Parent=Physo138105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 229078 229656 . - 0 ID=Physo138105;Parent=Physo138105;rank=3 scaffold_60 . exon 229078 229656 . - . ID=Physo138105.3;Parent=Physo138105;constitutive=1;rank=3 scaffold_60 . CDS 229680 229874 . - 0 ID=Physo138105;Parent=Physo138105;rank=2 scaffold_60 . exon 229680 229874 . - . ID=Physo138105.2;Parent=Physo138105;constitutive=1;rank=2 scaffold_60 . CDS 229990 230262 . - 0 ID=Physo138105;Parent=Physo138105;rank=1 scaffold_60 . exon 229990 230262 . - . ID=Physo138105.1;Parent=Physo138105;constitutive=1;rank=1 scaffold_60 . biological_region 237285 237287 0.999 - . logic_name=eponine scaffold_60 . biological_region 237310 237312 0.999 - . logic_name=eponine scaffold_60 . repeat_region 238328 238375 . ? . description=dust scaffold_60 . repeat_region 238330 238375 . ? . description=trf scaffold_60 . biological_region 238573 238586 0.999 + . logic_name=eponine scaffold_60 . biological_region 238595 238597 0.999 - . logic_name=eponine scaffold_60 . repeat_region 238609 238730 . ? . description=trf scaffold_60 . repeat_region 239003 239039 . ? . description=trf scaffold_60 . biological_region 239326 239329 0.999 - . logic_name=eponine scaffold_60 . biological_region 239791 239792 0.999 - . logic_name=eponine scaffold_60 . biological_region 239954 239960 0.999 + . logic_name=eponine scaffold_60 . repeat_region 239955 239989 . ? . description=trf scaffold_60 . biological_region 240109 240109 0.999 - . logic_name=eponine scaffold_60 . repeat_region 242366 242375 . ? . description=dust scaffold_60 . repeat_region 242385 242398 . ? . description=dust scaffold_60 . repeat_region 242496 242504 . ? . description=dust scaffold_60 . repeat_region 243320 243333 . ? . description=dust scaffold_60 . biological_region 243614 243619 0.999 - . logic_name=eponine scaffold_60 . biological_region 244719 244720 0.999 - . logic_name=eponine scaffold_60 . biological_region 245467 245470 0.999 + . logic_name=eponine scaffold_60 . biological_region 245964 245969 0.999 + . logic_name=eponine scaffold_60 . biological_region 245971 245972 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 238200 238909 . - . ID=Physo138106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600065;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 238200 238909 . - . ID=Physo138106;Parent=Physo138106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 238200 238242 . - 0 ID=Physo138106;Parent=Physo138106;rank=4 scaffold_60 . exon 238200 238242 . - . ID=Physo138106.4;Parent=Physo138106;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 238561 238649 . - 0 ID=Physo138106;Parent=Physo138106;rank=3 scaffold_60 . exon 238561 238649 . - . ID=Physo138106.3;Parent=Physo138106;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_60 . CDS 238712 238724 . - 0 ID=Physo138106;Parent=Physo138106;rank=2 scaffold_60 . exon 238712 238724 . - . ID=Physo138106.2;Parent=Physo138106;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 238857 238909 . - 0 ID=Physo138106;Parent=Physo138106;rank=1 scaffold_60 . exon 238857 238909 . - . ID=Physo138106.1;Parent=Physo138106;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 239656 240221 . - . ID=Physo138107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600066;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 239656 240221 . - . ID=Physo138107;Parent=Physo138107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 239656 240042 . - 0 ID=Physo138107;Parent=Physo138107;rank=2 scaffold_60 . exon 239656 240042 . - . ID=Physo138107.2;Parent=Physo138107;constitutive=1;rank=2 scaffold_60 . CDS 240072 240221 . - 0 ID=Physo138107;Parent=Physo138107;rank=1 scaffold_60 . exon 240072 240221 . - . ID=Physo138107.1;Parent=Physo138107;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 244508 246095 . + . ID=Physo138108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600067;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 244508 246095 . + . ID=Physo138108;Parent=Physo138108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 244508 246095 . + . ID=Physo138108.1;Parent=Physo138108;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 244593 246095 . + 0 ID=Physo138108;Parent=Physo138108;rank=1 scaffold_60 ensembl protein_coding_gene 246503 247673 . - . ID=Physo138109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600068;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 246503 247673 . - . ID=Physo138109;Parent=Physo138109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 246503 247352 . - 0 ID=Physo138109;Parent=Physo138109;rank=2 scaffold_60 . exon 246503 247352 . - . ID=Physo138109.2;Parent=Physo138109;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 247405 247673 . - 0 ID=Physo138109;Parent=Physo138109;rank=1 scaffold_60 . repeat_region 248722 249025 . - . description=GypsyPi-1c_LTR scaffold_60 . repeat_region 249026 249348 . - . description=GypsyPi-1c_I-int scaffold_60 . repeat_region 249917 250846 . - . description=GypsyPi-1c_I-int scaffold_60 . repeat_region 251166 256358 . - . description=GypsyPi-1c_I-int scaffold_60 . repeat_region 256359 256541 . - . description=GypsyPi-1c_LTR scaffold_60 . exon 247405 247673 . - . ID=Physo138109.1;Parent=Physo138109;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 249212 251184 . + . ID=Physo138110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600069;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 249212 251184 . + . ID=Physo138110;Parent=Physo138110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 249212 250742 . + 0 ID=Physo138110;Parent=Physo138110;rank=1 scaffold_60 . exon 249212 250742 . + . ID=Physo138110.1;Parent=Physo138110;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 250880 251184 . + 0 ID=Physo138110;Parent=Physo138110;rank=2 scaffold_60 . exon 250880 251184 . + . ID=Physo138110.2;Parent=Physo138110;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 251629 256271 . - . ID=Physo138111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600070;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 251629 256271 . - . ID=Physo138111;Parent=Physo138111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 251629 254694 . - 0 ID=Physo138111;Parent=Physo138111;rank=4 scaffold_60 . exon 251629 254694 . - . ID=Physo138111.4;Parent=Physo138111;constitutive=1;rank=4 scaffold_60 . CDS 254984 255226 . - 0 ID=Physo138111;Parent=Physo138111;rank=3 scaffold_60 . exon 254984 255226 . - . ID=Physo138111.3;Parent=Physo138111;constitutive=1;rank=3 scaffold_60 . CDS 255529 255669 . - 0 ID=Physo138111;Parent=Physo138111;rank=2 scaffold_60 . exon 255529 255669 . - . ID=Physo138111.2;Parent=Physo138111;constitutive=1;rank=2 scaffold_60 . CDS 255717 256271 . - 0 ID=Physo138111;Parent=Physo138111;rank=1 scaffold_60 . exon 255717 256271 . - . ID=Physo138111.1;Parent=Physo138111;constitutive=1;rank=1 scaffold_60 . biological_region 257922 257924 0.999 + . logic_name=eponine scaffold_60 . biological_region 259040 259045 0.999 + . logic_name=eponine scaffold_60 . biological_region 259423 259427 0.999 - . logic_name=eponine scaffold_60 . biological_region 259482 259483 0.999 + . logic_name=eponine scaffold_60 . biological_region 263624 263628 0.999 - . logic_name=eponine scaffold_60 . repeat_region 263741 263804 . ? . description=trf scaffold_60 . repeat_region 264421 264429 . ? . description=dust scaffold_60 . biological_region 264533 264538 0.999 - . logic_name=eponine scaffold_60 . biological_region 264731 264731 0.999 + . logic_name=eponine scaffold_60 . biological_region 264751 264756 0.999 + . logic_name=eponine scaffold_60 . biological_region 264814 264821 0.999 + . logic_name=eponine scaffold_60 . biological_region 264866 264871 0.999 - . logic_name=eponine scaffold_60 . biological_region 264905 264910 0.999 + . logic_name=eponine scaffold_60 . biological_region 265468 265471 0.999 - . logic_name=eponine scaffold_60 . repeat_region 265861 265868 . ? . description=dust scaffold_60 ensembl protein_coding_gene 264324 265615 . + . ID=Physo109105;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600011;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 264324 265615 . + . ID=Physo109105;Parent=Physo109105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 264324 264397 . + . ID=Physo109105.1;Parent=Physo109105;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_60 . CDS 264354 264397 . + 0 ID=Physo109105;Parent=Physo109105;rank=1 scaffold_60 . CDS 264586 265456 . + 0 ID=Physo109105;Parent=Physo109105;rank=2 scaffold_60 . exon 264586 265615 . + . ID=Physo109105.2;Parent=Physo109105;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_60 ensembl protein_coding_gene 258427 258924 . - . ID=Physo138112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600071;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 258427 258924 . - . ID=Physo138112;Parent=Physo138112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 258427 258924 . - 0 ID=Physo138112;Parent=Physo138112;rank=1 scaffold_60 . exon 258427 258924 . - . ID=Physo138112.1;Parent=Physo138112;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 261848 264013 . + . ID=Physo138113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600072;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 261848 264013 . + . ID=Physo138113;Parent=Physo138113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 261848 264013 . + 0 ID=Physo138113;Parent=Physo138113;rank=1 scaffold_60 . exon 261848 264013 . + . ID=Physo138113.1;Parent=Physo138113;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 266426 267363 . + . ID=Physo138115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600074;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 266426 267363 . + . ID=Physo138115;Parent=Physo138115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 266426 267363 . + . ID=Physo138115.1;Parent=Physo138115;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 266428 267234 . + 0 ID=Physo138115;Parent=Physo138115;rank=1 scaffold_60 ensembl protein_coding_gene 267990 269217 . + . ID=Physo109106;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600012;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 267990 269217 . + . ID=Physo109106;Parent=Physo109106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 267990 269004 . + . ID=Physo109106.1;Parent=Physo109106;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 268213 269004 . + 0 ID=Physo109106;Parent=Physo109106;rank=1 scaffold_60 . CDS 269080 269217 . + 0 ID=Physo109106;Parent=Physo109106;rank=2 scaffold_60 . exon 269080 269217 . + . ID=Physo109106.2;Parent=Physo109106;constitutive=1;rank=2 scaffold_60 ensembl protein_coding_gene 271811 272692 . - . ID=Physo109107;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600013;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 271811 272692 . - . ID=Physo109107;Parent=Physo109107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 271811 272060 . - . ID=Physo109107.4;Parent=Physo109107;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_60 . CDS 271967 272060 . - 0 ID=Physo109107;Parent=Physo109107;rank=4 scaffold_60 . CDS 272132 272221 . - 0 ID=Physo109107;Parent=Physo109107;rank=3 scaffold_60 . exon 272132 272221 . - . ID=Physo109107.3;Parent=Physo109107;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_60 . CDS 272301 272498 . - 0 ID=Physo109107;Parent=Physo109107;rank=2 scaffold_60 . exon 272301 272498 . - . ID=Physo109107.2;Parent=Physo109107;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . CDS 272603 272667 . - 0 ID=Physo109107;Parent=Physo109107;rank=1 scaffold_60 . exon 272603 272692 . - . ID=Physo109107.1;Parent=Physo109107;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 270959 271801 . + . ID=Physo138117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600076;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 270959 271801 . + . ID=Physo138117;Parent=Physo138117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 270959 271801 . + 0 ID=Physo138117;Parent=Physo138117;rank=1 scaffold_60 . exon 270959 271801 . + . ID=Physo138117.1;Parent=Physo138117;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 272924 274613 . + . ID=Physo138119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600078;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 272924 274613 . + . ID=Physo138119;Parent=Physo138119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 272924 273327 . + 0 ID=Physo138119;Parent=Physo138119;rank=1 scaffold_60 . exon 272924 273327 . + . ID=Physo138119.1;Parent=Physo138119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 273395 274613 . + 0 ID=Physo138119;Parent=Physo138119;rank=2 scaffold_60 . exon 273395 274613 . + . ID=Physo138119.2;Parent=Physo138119;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 ensembl protein_coding_gene 274847 276624 . - . ID=Physo138120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600079;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 274847 276624 . - . ID=Physo138120;Parent=Physo138120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 274847 276388 . - 0 ID=Physo138120;Parent=Physo138120;rank=2 scaffold_60 . exon 274847 276388 . - . ID=Physo138120.2;Parent=Physo138120;constitutive=1;rank=2 scaffold_60 . CDS 276511 276624 . - 0 ID=Physo138120;Parent=Physo138120;rank=1 scaffold_60 . repeat_region 277940 277993 . ? . description=trf scaffold_60 . repeat_region 278137 278194 . ? . description=trf scaffold_60 . repeat_region 278705 278762 . ? . description=trf scaffold_60 . repeat_region 279967 279994 . ? . description=dust scaffold_60 . biological_region 281146 281149 0.999 - . logic_name=eponine scaffold_60 . repeat_region 281296 281328 . ? . description=trf scaffold_60 . repeat_region 282088 282186 . ? . description=trf scaffold_60 . repeat_region 282171 282301 . ? . description=trf scaffold_60 . biological_region 283463 283465 0.999 + . logic_name=eponine scaffold_60 . biological_region 284533 284539 0.999 - . logic_name=eponine scaffold_60 . biological_region 285688 285689 0.999 + . logic_name=eponine scaffold_60 . biological_region 286085 286090 0.999 - . logic_name=eponine scaffold_60 . exon 276511 276624 . - . ID=Physo138120.1;Parent=Physo138120;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 279278 279771 . - . ID=Physo138121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600080;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 279278 279771 . - . ID=Physo138121;Parent=Physo138121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 279278 279665 . - 0 ID=Physo138121;Parent=Physo138121;rank=2 scaffold_60 . exon 279278 279665 . - . ID=Physo138121.2;Parent=Physo138121;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 279722 279771 . - 0 ID=Physo138121;Parent=Physo138121;rank=1 scaffold_60 . exon 279722 279771 . - . ID=Physo138121.1;Parent=Physo138121;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 282383 283777 . - . ID=Physo138122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600081;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 282383 283777 . - . ID=Physo138122;Parent=Physo138122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 282383 282530 . - 0 ID=Physo138122;Parent=Physo138122;rank=3 scaffold_60 . exon 282383 282530 . - . ID=Physo138122.3;Parent=Physo138122;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 . CDS 282744 282751 . - 0 ID=Physo138122;Parent=Physo138122;rank=2 scaffold_60 . exon 282744 282751 . - . ID=Physo138122.2;Parent=Physo138122;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_60 . CDS 282821 283777 . - 0 ID=Physo138122;Parent=Physo138122;rank=1 scaffold_60 . exon 282821 283777 . - . ID=Physo138122.1;Parent=Physo138122;constitutive=1;rank=1 scaffold_60 ensembl pseudogene 285703 286209 . - . ID=Physo138123;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_600082;logic_name=jgi_physo1_1 scaffold_60 ensembl pseudogene 285703 286209 . - . ID=Physo138123;Parent=Physo138123;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_60 . exon 285703 286209 . - . ID=Physo138123.1;Parent=Physo138123;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 288011 288603 . + . ID=Physo138124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600083;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 288011 288603 . + . ID=Physo138124;Parent=Physo138124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 288011 288603 . + . ID=Physo138124.1;Parent=Physo138124;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 288037 288603 . + 0 ID=Physo138124;Parent=Physo138124;rank=1 scaffold_60 ensembl protein_coding_gene 289453 289947 . + . ID=Physo138125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600084;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 289453 289947 . + . ID=Physo138125;Parent=Physo138125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 289453 289947 . + 0 ID=Physo138125;Parent=Physo138125;rank=1 scaffold_60 . exon 289453 289947 . + . ID=Physo138125.1;Parent=Physo138125;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 291248 291763 . + . ID=Physo138126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600085;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 291248 291763 . + . ID=Physo138126;Parent=Physo138126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 291248 291763 . + 0 ID=Physo138126;Parent=Physo138126;rank=1 scaffold_60 . exon 291248 291763 . + . ID=Physo138126.1;Parent=Physo138126;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 293482 293991 . + . ID=Physo138127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600086;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 293482 293991 . + . ID=Physo138127;Parent=Physo138127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 293482 293991 . + 0 ID=Physo138127;Parent=Physo138127;rank=1 scaffold_60 . exon 293482 293991 . + . ID=Physo138127.1;Parent=Physo138127;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 295162 295710 . + . ID=Physo138128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600087;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 295162 295710 . + . ID=Physo138128;Parent=Physo138128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 295162 295710 . + 0 ID=Physo138128;Parent=Physo138128;rank=1 scaffold_60 . exon 295162 295710 . + . ID=Physo138128.1;Parent=Physo138128;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 296054 296512 . - . ID=Physo138129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600088;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 296054 296512 . - . ID=Physo138129;Parent=Physo138129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 296054 296482 . - 0 ID=Physo138129;Parent=Physo138129;rank=1 scaffold_60 . exon 296054 296512 . - . ID=Physo138129.1;Parent=Physo138129;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . biological_region 297324 297325 0.999 + . logic_name=eponine scaffold_60 . repeat_region 298348 298404 . ? . description=dust scaffold_60 . repeat_region 298348 298404 . ? . description=trf scaffold_60 . repeat_region 298353 298404 . ? . description=trf scaffold_60 . biological_region 298739 298740 0.999 + . logic_name=eponine scaffold_60 . biological_region 300664 300667 0.999 + . logic_name=eponine scaffold_60 . repeat_region 301124 301148 . ? . description=trf scaffold_60 . biological_region 301927 301930 0.999 + . logic_name=eponine scaffold_60 . biological_region 301956 301960 0.999 - . logic_name=eponine scaffold_60 . biological_region 302224 302227 0.999 + . logic_name=eponine scaffold_60 . biological_region 303107 303110 0.999 - . logic_name=eponine scaffold_60 . biological_region 304075 304078 0.999 + . logic_name=eponine scaffold_60 . biological_region 304082 304086 0.999 - . logic_name=eponine scaffold_60 . biological_region 304139 304141 0.999 + . logic_name=eponine scaffold_60 . biological_region 304966 304972 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 297767 299960 . + . ID=Physo138130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600089;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 297767 299960 . + . ID=Physo138130;Parent=Physo138130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 297767 297923 . + 0 ID=Physo138130;Parent=Physo138130;rank=1 scaffold_60 . exon 297767 297923 . + . ID=Physo138130.1;Parent=Physo138130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 297982 299960 . + 0 ID=Physo138130;Parent=Physo138130;rank=2 scaffold_60 . exon 297982 299960 . + . ID=Physo138130.2;Parent=Physo138130;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 300194 301027 . + . ID=Physo138131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600090;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 300194 301027 . + . ID=Physo138131;Parent=Physo138131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 300194 301027 . + 0 ID=Physo138131;Parent=Physo138131;rank=1 scaffold_60 . exon 300194 301027 . + . ID=Physo138131.1;Parent=Physo138131;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 301582 304230 . - . ID=Physo138132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600091;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 301582 304230 . - . ID=Physo138132;Parent=Physo138132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 301582 304230 . - 0 ID=Physo138132;Parent=Physo138132;rank=1 scaffold_60 . exon 301582 304230 . - . ID=Physo138132.1;Parent=Physo138132;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 304779 305399 . + . ID=Physo138133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600092;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 304779 305399 . + . ID=Physo138133;Parent=Physo138133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 304779 305399 . + 0 ID=Physo138133;Parent=Physo138133;rank=1 scaffold_60 . exon 304779 305399 . + . ID=Physo138133.1;Parent=Physo138133;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 309087 310339 . - . ID=Physo138135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600094;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 309087 310339 . - . ID=Physo138135;Parent=Physo138135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 309087 309149 . - 0 ID=Physo138135;Parent=Physo138135;rank=5 scaffold_60 . exon 309087 309149 . - . ID=Physo138135.5;Parent=Physo138135;constitutive=1;rank=5 scaffold_60 . CDS 309227 309729 . - 0 ID=Physo138135;Parent=Physo138135;rank=4 scaffold_60 . exon 309227 309729 . - . ID=Physo138135.4;Parent=Physo138135;constitutive=1;ensembl_phase=1;rank=4 scaffold_60 . CDS 309887 309972 . - 0 ID=Physo138135;Parent=Physo138135;rank=3 scaffold_60 . exon 309887 309972 . - . ID=Physo138135.3;Parent=Physo138135;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_60 . CDS 310126 310233 . - 0 ID=Physo138135;Parent=Physo138135;rank=2 scaffold_60 . exon 310126 310233 . - . ID=Physo138135.2;Parent=Physo138135;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . CDS 310308 310339 . - 0 ID=Physo138135;Parent=Physo138135;rank=1 scaffold_60 . exon 310308 310339 . - . ID=Physo138135.1;Parent=Physo138135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 315522 316526 . + . ID=Physo138136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600095;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 315522 316526 . + . ID=Physo138136;Parent=Physo138136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 315522 315993 . + 0 ID=Physo138136;Parent=Physo138136;rank=1 scaffold_60 . exon 315522 315993 . + . ID=Physo138136.1;Parent=Physo138136;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 316018 316526 . + 0 ID=Physo138136;Parent=Physo138136;rank=2 scaffold_60 ensembl protein_coding_gene 306928 308744 . + . ID=Physo157764;biotype=protein_coding;external_name=C_scaffold_60000015;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 306928 308744 . + . ID=Physo157764;Parent=Physo157764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 306928 307518 . + 0 ID=Physo157764;Parent=Physo157764;rank=1 scaffold_60 . exon 306928 307518 . + . ID=Physo157764.1;Parent=Physo157764;constitutive=1;rank=1 scaffold_60 . CDS 307660 308010 . + 0 ID=Physo157764;Parent=Physo157764;rank=2 scaffold_60 . exon 307660 308010 . + . ID=Physo157764.2;Parent=Physo157764;constitutive=1;rank=2 scaffold_60 . CDS 308461 308581 . + 0 ID=Physo157764;Parent=Physo157764;rank=3 scaffold_60 . exon 308461 308581 . + . ID=Physo157764.3;Parent=Physo157764;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_60 . CDS 308629 308744 . + 0 ID=Physo157764;Parent=Physo157764;rank=4 scaffold_60 . exon 308629 308744 . + . ID=Physo157764.4;Parent=Physo157764;constitutive=1;ensembl_phase=1;rank=4 scaffold_60 . biological_region 316435 316437 0.999 - . logic_name=eponine scaffold_60 . repeat_region 319374 319383 . ? . description=dust scaffold_60 . repeat_region 325351 325413 . ? . description=dust scaffold_60 . biological_region 325654 325656 0.999 - . logic_name=eponine scaffold_60 . exon 316018 316526 . + . ID=Physo138136.2;Parent=Physo138136;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 316972 318971 . + . ID=Physo138137;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600096;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 316972 318971 . + . ID=Physo138137;Parent=Physo138137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 316972 317408 . + 0 ID=Physo138137;Parent=Physo138137;rank=1 scaffold_60 . exon 316972 317408 . + . ID=Physo138137.1;Parent=Physo138137;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 317624 317902 . + 0 ID=Physo138137;Parent=Physo138137;rank=2 scaffold_60 . exon 317624 317902 . + . ID=Physo138137.2;Parent=Physo138137;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . CDS 318002 318327 . + 0 ID=Physo138137;Parent=Physo138137;rank=3 scaffold_60 . exon 318002 318327 . + . ID=Physo138137.3;Parent=Physo138137;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_60 . CDS 318621 318697 . + 0 ID=Physo138137;Parent=Physo138137;rank=4 scaffold_60 . exon 318621 318697 . + . ID=Physo138137.4;Parent=Physo138137;constitutive=1;ensembl_phase=1;rank=4 scaffold_60 . CDS 318728 318901 . + 0 ID=Physo138137;Parent=Physo138137;rank=5 scaffold_60 . exon 318728 318901 . + . ID=Physo138137.5;Parent=Physo138137;constitutive=1;rank=5 scaffold_60 . CDS 318951 318971 . + 0 ID=Physo138137;Parent=Physo138137;rank=6 scaffold_60 . exon 318951 318971 . + . ID=Physo138137.6;Parent=Physo138137;constitutive=1;rank=6 scaffold_60 ensembl protein_coding_gene 324105 324538 . + . ID=Physo138138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600097;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 324105 324538 . + . ID=Physo138138;Parent=Physo138138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 324105 324261 . + 0 ID=Physo138138;Parent=Physo138138;rank=1 scaffold_60 . exon 324105 324261 . + . ID=Physo138138.1;Parent=Physo138138;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 324315 324538 . + 0 ID=Physo138138;Parent=Physo138138;rank=2 scaffold_60 . exon 324315 324538 . + . ID=Physo138138.2;Parent=Physo138138;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 324791 325942 . - . ID=Physo138139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600098;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 324791 325942 . - . ID=Physo138139;Parent=Physo138139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 324791 325942 . - 0 ID=Physo138139;Parent=Physo138139;rank=1 scaffold_60 . exon 324791 325942 . - . ID=Physo138139.1;Parent=Physo138139;constitutive=1;rank=1 scaffold_60 . repeat_region 332168 332223 . ? . description=trf scaffold_60 . repeat_region 332169 332223 . ? . description=trf scaffold_60 . repeat_region 332948 333057 . ? . description=trf scaffold_60 . repeat_region 333624 333678 . ? . description=trf scaffold_60 ensembl protein_coding_gene 332918 333764 . - . ID=Physo138140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600099;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 332918 333764 . - . ID=Physo138140;Parent=Physo138140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 332918 333243 . - 0 ID=Physo138140;Parent=Physo138140;rank=3 scaffold_60 . exon 332918 333243 . - . ID=Physo138140.3;Parent=Physo138140;constitutive=1;ensembl_phase=1;rank=3 scaffold_60 . CDS 333539 333542 . - 0 ID=Physo138140;Parent=Physo138140;rank=2 scaffold_60 . exon 333539 333542 . - . ID=Physo138140.2;Parent=Physo138140;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 333624 333764 . - 0 ID=Physo138140;Parent=Physo138140;rank=1 scaffold_60 . exon 333624 333764 . - . ID=Physo138140.1;Parent=Physo138140;constitutive=1;rank=1 scaffold_60 . biological_region 336870 336874 0.999 + . logic_name=eponine scaffold_60 . repeat_region 337956 337966 . ? . description=dust scaffold_60 . biological_region 342564 342566 0.999 + . logic_name=eponine scaffold_60 ensembl protein_coding_gene 338284 338766 . - . ID=Physo138141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600100;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 338284 338766 . - . ID=Physo138141;Parent=Physo138141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 338284 338766 . - 0 ID=Physo138141;Parent=Physo138141;rank=1 scaffold_60 . exon 338284 338766 . - . ID=Physo138141.1;Parent=Physo138141;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 339580 340068 . - . ID=Physo138142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600101;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 339580 340068 . - . ID=Physo138142;Parent=Physo138142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 339580 340068 . - 0 ID=Physo138142;Parent=Physo138142;rank=1 scaffold_60 . exon 339580 340068 . - . ID=Physo138142.1;Parent=Physo138142;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 341527 341919 . - . ID=Physo157766;biotype=protein_coding;external_name=C_scaffold_60000017;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 341527 341919 . - . ID=Physo157766;Parent=Physo157766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 341527 341919 . - 0 ID=Physo157766;Parent=Physo157766;rank=1 scaffold_60 . exon 341527 341919 . - . ID=Physo157766.1;Parent=Physo157766;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 342502 342907 . + . ID=Physo157767;biotype=protein_coding;external_name=C_scaffold_60000018;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 342502 342907 . + . ID=Physo157767;Parent=Physo157767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 342502 342504 . + 0 ID=Physo157767;Parent=Physo157767;rank=1 scaffold_60 . exon 342502 342504 . + . ID=Physo157767.1;Parent=Physo157767;constitutive=1;rank=1 scaffold_60 . CDS 342578 342664 . + 0 ID=Physo157767;Parent=Physo157767;rank=2 scaffold_60 . exon 342578 342664 . + . ID=Physo157767.2;Parent=Physo157767;constitutive=1;rank=2 scaffold_60 . CDS 342749 342907 . + 0 ID=Physo157767;Parent=Physo157767;rank=3 scaffold_60 . exon 342749 342907 . + . ID=Physo157767.3;Parent=Physo157767;constitutive=1;rank=3 scaffold_60 ensembl protein_coding_gene 343225 344544 . - . ID=Physo157768;biotype=protein_coding;external_name=C_scaffold_60000019;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 343225 344544 . - . ID=Physo157768;Parent=Physo157768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 343225 343368 . - 0 ID=Physo157768;Parent=Physo157768;rank=5 scaffold_60 . exon 343225 343368 . - . ID=Physo157768.5;Parent=Physo157768;constitutive=1;rank=5 scaffold_60 . CDS 343452 343529 . - 0 ID=Physo157768;Parent=Physo157768;rank=4 scaffold_60 . exon 343452 343529 . - . ID=Physo157768.4;Parent=Physo157768;constitutive=1;rank=4 scaffold_60 . CDS 343608 343682 . - 0 ID=Physo157768;Parent=Physo157768;rank=3 scaffold_60 . exon 343608 343682 . - . ID=Physo157768.3;Parent=Physo157768;constitutive=1;rank=3 scaffold_60 . CDS 343773 343854 . - 0 ID=Physo157768;Parent=Physo157768;rank=2 scaffold_60 . exon 343773 343854 . - . ID=Physo157768.2;Parent=Physo157768;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 343943 344544 . - 0 ID=Physo157768;Parent=Physo157768;rank=1 scaffold_60 . exon 343943 344544 . - . ID=Physo157768.1;Parent=Physo157768;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . repeat_region 354365 354406 . ? . description=trf scaffold_60 ensembl protein_coding_gene 346983 347525 . - . ID=Physo109108;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600014;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 346983 347525 . - . ID=Physo109108;Parent=Physo109108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 346983 347525 . - 0 ID=Physo109108;Parent=Physo109108;rank=1 scaffold_60 . exon 346983 347525 . - . ID=Physo109108.1;Parent=Physo109108;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 347773 348895 . + . ID=Physo109109;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600015;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 347773 348895 . + . ID=Physo109109;Parent=Physo109109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 347773 347973 . + . ID=Physo109109.1;Parent=Physo109109;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 347785 347973 . + 0 ID=Physo109109;Parent=Physo109109;rank=1 scaffold_60 . CDS 348370 348469 . + 0 ID=Physo109109;Parent=Physo109109;rank=2 scaffold_60 . exon 348370 348469 . + . ID=Physo109109.2;Parent=Physo109109;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_60 . CDS 348557 348702 . + 0 ID=Physo109109;Parent=Physo109109;rank=3 scaffold_60 . exon 348557 348895 . + . ID=Physo109109.3;Parent=Physo109109;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_60 ensembl protein_coding_gene 349068 349286 . + . ID=Physo119097;biotype=protein_coding;external_name=estExt_Genewise1.C_600015;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 349068 349286 . + . ID=Physo119097;Parent=Physo119097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 349068 349286 . + . ID=Physo119097.1;Parent=Physo119097;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 349070 349285 . + 0 ID=Physo119097;Parent=Physo119097;rank=1 scaffold_60 ensembl protein_coding_gene 345747 346783 . + . ID=Physo138145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600104;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 345747 346783 . + . ID=Physo138145;Parent=Physo138145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 345747 346260 . + 0 ID=Physo138145;Parent=Physo138145;rank=1 scaffold_60 . exon 345747 346260 . + . ID=Physo138145.1;Parent=Physo138145;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 346347 346783 . + 0 ID=Physo138145;Parent=Physo138145;rank=2 scaffold_60 . exon 346347 346783 . + . ID=Physo138145.2;Parent=Physo138145;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 349950 351236 . - . ID=Physo138148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600107;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 349950 351236 . - . ID=Physo138148;Parent=Physo138148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 349950 350259 . - 0 ID=Physo138148;Parent=Physo138148;rank=4 scaffold_60 . exon 349950 350259 . - . ID=Physo138148.4;Parent=Physo138148;constitutive=1;ensembl_phase=2;rank=4 scaffold_60 . CDS 350342 350428 . - 0 ID=Physo138148;Parent=Physo138148;rank=3 scaffold_60 . exon 350342 350428 . - . ID=Physo138148.3;Parent=Physo138148;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_60 . CDS 350506 351042 . - 0 ID=Physo138148;Parent=Physo138148;rank=2 scaffold_60 . exon 350506 351042 . - . ID=Physo138148.2;Parent=Physo138148;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_60 . CDS 351118 351236 . - 0 ID=Physo138148;Parent=Physo138148;rank=1 scaffold_60 . exon 351118 351236 . - . ID=Physo138148.1;Parent=Physo138148;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . repeat_region 356561 356569 . ? . description=dust scaffold_60 . repeat_region 358021 358045 . ? . description=dust scaffold_60 . biological_region 366952 366957 0.999 - . logic_name=eponine scaffold_60 . repeat_region 369901 369976 . ? . description=trf scaffold_60 . repeat_region 369901 369977 . ? . description=trf scaffold_60 . biological_region 370199 370201 0.999 - . logic_name=eponine scaffold_60 . biological_region 371130 371138 0.999 + . logic_name=eponine scaffold_60 . biological_region 371233 371233 0.999 - . logic_name=eponine scaffold_60 . biological_region 371716 371718 0.999 - . logic_name=eponine scaffold_60 . biological_region 372935 372938 0.999 - . logic_name=eponine scaffold_60 . repeat_region 373222 373255 . ? . description=trf scaffold_60 . biological_region 373432 373436 0.999 - . logic_name=eponine scaffold_60 . biological_region 373479 373482 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 371101 372416 . + . ID=Physo138149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600108;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 371101 372416 . + . ID=Physo138149;Parent=Physo138149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 371101 371345 . + 0 ID=Physo138149;Parent=Physo138149;rank=1 scaffold_60 . exon 371101 371345 . + . ID=Physo138149.1;Parent=Physo138149;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 . CDS 371477 371684 . + 0 ID=Physo138149;Parent=Physo138149;rank=2 scaffold_60 . exon 371477 371684 . + . ID=Physo138149.2;Parent=Physo138149;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 371844 372416 . + 0 ID=Physo138149;Parent=Physo138149;rank=3 scaffold_60 . exon 371844 372416 . + . ID=Physo138149.3;Parent=Physo138149;constitutive=1;rank=3 scaffold_60 ensembl protein_coding_gene 372623 373888 . - . ID=Physo138150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600109;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 372623 373888 . - . ID=Physo138150;Parent=Physo138150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 372623 373888 . - 0 ID=Physo138150;Parent=Physo138150;rank=1 scaffold_60 . exon 372623 373888 . - . ID=Physo138150.1;Parent=Physo138150;constitutive=1;rank=1 scaffold_60 . repeat_region 375140 375153 . ? . description=dust scaffold_60 . repeat_region 376403 376411 . ? . description=dust scaffold_60 . repeat_region 378921 378931 . ? . description=dust scaffold_60 . repeat_region 381533 381541 . ? . description=dust scaffold_60 ensembl protein_coding_gene 381576 382702 . - . ID=Physo109110;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_600016;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 381576 382702 . - . ID=Physo109110;Parent=Physo109110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 381576 382664 . - 0 ID=Physo109110;Parent=Physo109110;rank=1 scaffold_60 . exon 381576 382702 . - . ID=Physo109110.1;Parent=Physo109110;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 376603 377342 . + . ID=Physo138151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600110;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 376603 377342 . + . ID=Physo138151;Parent=Physo138151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 376603 376735 . + 0 ID=Physo138151;Parent=Physo138151;rank=1 scaffold_60 . exon 376603 376735 . + . ID=Physo138151.1;Parent=Physo138151;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 376879 377342 . + 0 ID=Physo138151;Parent=Physo138151;rank=2 scaffold_60 . exon 376879 377342 . + . ID=Physo138151.2;Parent=Physo138151;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 379342 381469 . + . ID=Physo138152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600111;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 379342 381469 . + . ID=Physo138152;Parent=Physo138152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 379342 379587 . + . ID=Physo138152.1;Parent=Physo138152;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_60 . CDS 379397 379587 . + 0 ID=Physo138152;Parent=Physo138152;rank=1 scaffold_60 . CDS 379708 381343 . + 0 ID=Physo138152;Parent=Physo138152;rank=2 scaffold_60 . exon 379708 381469 . + . ID=Physo138152.2;Parent=Physo138152;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_60 ensembl protein_coding_gene 383840 384930 . - . ID=Physo138154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600113;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 383840 384930 . - . ID=Physo138154;Parent=Physo138154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 383840 384490 . - 0 ID=Physo138154;Parent=Physo138154;rank=2 scaffold_60 . exon 383840 384490 . - . ID=Physo138154.2;Parent=Physo138154;constitutive=1;rank=2 scaffold_60 . CDS 384535 384930 . - 0 ID=Physo138154;Parent=Physo138154;rank=1 scaffold_60 . exon 384535 384930 . - . ID=Physo138154.1;Parent=Physo138154;constitutive=1;rank=1 scaffold_60 . biological_region 385268 385269 0.999 + . logic_name=eponine scaffold_60 . biological_region 386504 386509 0.999 - . logic_name=eponine scaffold_60 . repeat_region 390630 390838 . + . description=(CTG)n scaffold_60 . repeat_region 390631 390685 . ? . description=trf scaffold_60 . repeat_region 390809 390853 . ? . description=trf scaffold_60 . repeat_region 391115 391279 . ? . description=trf scaffold_60 ensembl protein_coding_gene 386005 387253 . - . ID=Physo138155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600114;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 386005 387253 . - . ID=Physo138155;Parent=Physo138155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 386005 386179 . - 0 ID=Physo138155;Parent=Physo138155;rank=3 scaffold_60 . exon 386005 386179 . - . ID=Physo138155.3;Parent=Physo138155;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 . CDS 386341 386572 . - 0 ID=Physo138155;Parent=Physo138155;rank=2 scaffold_60 . exon 386341 386572 . - . ID=Physo138155.2;Parent=Physo138155;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_60 . CDS 386656 387253 . - 0 ID=Physo138155;Parent=Physo138155;rank=1 scaffold_60 . exon 386656 387253 . - . ID=Physo138155.1;Parent=Physo138155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 ensembl protein_coding_gene 388754 391942 . - . ID=Physo138156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600115;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 388754 391942 . - . ID=Physo138156;Parent=Physo138156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 388754 391504 . - 0 ID=Physo138156;Parent=Physo138156;rank=3 scaffold_60 . exon 388754 391504 . - . ID=Physo138156.3;Parent=Physo138156;constitutive=1;rank=3 scaffold_60 . CDS 391589 391691 . - 0 ID=Physo138156;Parent=Physo138156;rank=2 scaffold_60 . exon 391589 391691 . - . ID=Physo138156.2;Parent=Physo138156;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 391881 391942 . - 0 ID=Physo138156;Parent=Physo138156;rank=1 scaffold_60 . exon 391881 391942 . - . ID=Physo138156.1;Parent=Physo138156;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 393014 393548 . - . ID=Physo138157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600116;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 393014 393548 . - . ID=Physo138157;Parent=Physo138157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 393014 393548 . - . ID=Physo138157.1;Parent=Physo138157;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 393144 393530 . - 0 ID=Physo138157;Parent=Physo138157;rank=1 scaffold_60 . repeat_region 395642 395649 . ? . description=dust scaffold_60 . repeat_region 395900 396142 . - . description=Sola3-2_PS scaffold_60 . repeat_region 395952 395960 . ? . description=dust scaffold_60 . repeat_region 396622 396852 . - . description=Sola3-2_PS scaffold_60 ensembl protein_coding_gene 397755 399419 . + . ID=Physo138158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600117;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 397755 399419 . + . ID=Physo138158;Parent=Physo138158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 397755 397878 . + 0 ID=Physo138158;Parent=Physo138158;rank=1 scaffold_60 . exon 397755 397878 . + . ID=Physo138158.1;Parent=Physo138158;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_60 . CDS 398011 399419 . + 0 ID=Physo138158;Parent=Physo138158;rank=2 scaffold_60 . exon 398011 399419 . + . ID=Physo138158.2;Parent=Physo138158;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 ensembl protein_coding_gene 401223 402184 . - . ID=Physo138159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600118;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 401223 402184 . - . ID=Physo138159;Parent=Physo138159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 401223 401322 . - 0 ID=Physo138159;Parent=Physo138159;rank=3 scaffold_60 . exon 401223 401322 . - . ID=Physo138159.3;Parent=Physo138159;constitutive=1;ensembl_phase=2;rank=3 scaffold_60 . CDS 401553 401983 . - 0 ID=Physo138159;Parent=Physo138159;rank=2 scaffold_60 . exon 401553 401983 . - . ID=Physo138159.2;Parent=Physo138159;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_60 . CDS 402146 402184 . - 0 ID=Physo138159;Parent=Physo138159;rank=1 scaffold_60 . exon 402146 402184 . - . ID=Physo138159.1;Parent=Physo138159;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 403522 405027 . - . ID=Physo157769;biotype=protein_coding;external_name=C_scaffold_60000020;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 403522 405027 . - . ID=Physo157769;Parent=Physo157769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 403522 404346 . - 0 ID=Physo157769;Parent=Physo157769;rank=3 scaffold_60 . exon 403522 404346 . - . ID=Physo157769.3;Parent=Physo157769;constitutive=1;rank=3 scaffold_60 . CDS 404374 404761 . - 0 ID=Physo157769;Parent=Physo157769;rank=2 scaffold_60 . exon 404374 404761 . - . ID=Physo157769.2;Parent=Physo157769;constitutive=1;ensembl_phase=2;rank=2 scaffold_60 . CDS 404804 405027 . - 0 ID=Physo157769;Parent=Physo157769;rank=1 scaffold_60 . repeat_region 405208 405229 . ? . description=trf scaffold_60 . repeat_region 408363 408391 . ? . description=trf scaffold_60 . biological_region 408888 408890 0.999 - . logic_name=eponine scaffold_60 ensembl protein_coding_gene 407044 408483 . - . ID=Physo119111;biotype=protein_coding;external_name=estExt_Genewise1.C_600029;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 407044 408483 . - . ID=Physo119111;Parent=Physo119111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 407044 408140 . - 0 ID=Physo119111;Parent=Physo119111;rank=2 scaffold_60 . exon 407044 408140 . - . ID=Physo119111.2;Parent=Physo119111;constitutive=1;ensembl_phase=1;rank=2 scaffold_60 . CDS 408229 408463 . - 0 ID=Physo119111;Parent=Physo119111;rank=1 scaffold_60 . exon 408229 408483 . - . ID=Physo119111.1;Parent=Physo119111;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_60 ensembl protein_coding_gene 406200 406754 . + . ID=Physo138161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600120;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 406200 406754 . + . ID=Physo138161;Parent=Physo138161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 406200 406754 . + . ID=Physo138161.1;Parent=Physo138161;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 406278 406670 . + 0 ID=Physo138161;Parent=Physo138161;rank=1 scaffold_60 ensembl protein_coding_gene 408767 409544 . + . ID=Physo138163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600122;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 408767 409544 . + . ID=Physo138163;Parent=Physo138163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 408767 409123 . + 0 ID=Physo138163;Parent=Physo138163;rank=1 scaffold_60 . exon 408767 409123 . + . ID=Physo138163.1;Parent=Physo138163;constitutive=1;rank=1 scaffold_60 . CDS 409195 409440 . + 0 ID=Physo138163;Parent=Physo138163;rank=2 scaffold_60 . exon 409195 409544 . + . ID=Physo138163.2;Parent=Physo138163;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_60 ensembl protein_coding_gene 409570 417840 . - . ID=Physo138164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600123;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 409570 417840 . - . ID=Physo138164;Parent=Physo138164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 409570 417840 . - 0 ID=Physo138164;Parent=Physo138164;rank=1 scaffold_60 . exon 409570 417840 . - . ID=Physo138164.1;Parent=Physo138164;constitutive=1;rank=1 scaffold_60 . exon 404804 405027 . - . ID=Physo157769.1;Parent=Physo157769;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_60 ensembl protein_coding_gene 419027 419622 . - . ID=Physo119118;biotype=protein_coding;external_name=estExt_Genewise1.C_600036;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 419027 419622 . - . ID=Physo119118;Parent=Physo119118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 419027 419074 . - 0 ID=Physo119118;Parent=Physo119118;rank=2 scaffold_60 . exon 419027 419074 . - . ID=Physo119118.2;Parent=Physo119118;constitutive=1;rank=2 scaffold_60 . CDS 419146 419622 . - 0 ID=Physo119118;Parent=Physo119118;rank=1 scaffold_60 . exon 419146 419622 . - . ID=Physo119118.1;Parent=Physo119118;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 421805 421996 . + . ID=Physo119124;biotype=protein_coding;external_name=estExt_Genewise1.C_600042;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 421805 421996 . + . ID=Physo119124;Parent=Physo119124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . CDS 421805 421996 . + 0 ID=Physo119124;Parent=Physo119124;rank=1 scaffold_60 . exon 421805 421996 . + . ID=Physo119124.1;Parent=Physo119124;constitutive=1;rank=1 scaffold_60 ensembl protein_coding_gene 417990 418853 . + . ID=Physo138165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_600124;logic_name=jgi_physo1_1 scaffold_60 ensembl transcript 417990 418853 . + . ID=Physo138165;Parent=Physo138165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_60 . exon 417990 418408 . + . ID=Physo138165.1;Parent=Physo138165;constitutive=1;ensembl_phase=-1;rank=1 scaffold_60 . CDS 418007 418408 . + 0 ID=Physo138165;Parent=Physo138165;rank=1 scaffold_60 . CDS 418488 418853 . + 0 ID=Physo138165;Parent=Physo138165;rank=2 scaffold_60 . exon 418488 418853 . + . ID=Physo138165.2;Parent=Physo138165;constitutive=1;rank=2 scaffold_60 . repeat_region 427827 427835 . ? . description=dust scaffold_60 . repeat_region 429758 429771 . ? . description=dust scaffold_60 . repeat_region 431353 431400 . ? . description=trf scaffold_60 . repeat_region 433139 433202 . ? . description=dust scaffold_60 . repeat_region 433173 433220 . ? . description=trf scaffold_60 ensembl tRNA_gene 431209 431280 . - . ID=EPrPSOG00000000242;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_60 ensembl transcript 431209 431280 . - . ID=EPrPSOT00000000242;Parent=EPrPSOG00000000242;biotype=tRNA;logic_name=ncrna_eg scaffold_60 . exon 431209 431280 . - . ID=EPrPSOE00000000242;Parent=EPrPSOT00000000242;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_58 1 435811 scaffold_58 . biological_region 210 217 0.999 + . logic_name=eponine scaffold_58 . biological_region 245 254 0.999 - . logic_name=eponine scaffold_58 . biological_region 300 306 0.999 - . logic_name=eponine scaffold_58 . biological_region 323 324 0.999 - . logic_name=eponine scaffold_58 . biological_region 487 491 0.999 - . logic_name=eponine scaffold_58 . repeat_region 572 672 . ? . description=trf scaffold_58 . biological_region 720 724 0.999 - . logic_name=eponine scaffold_58 . biological_region 870 870 0.999 - . logic_name=eponine scaffold_58 . biological_region 901 902 0.999 - . logic_name=eponine scaffold_58 . biological_region 958 960 0.999 + . logic_name=eponine scaffold_58 . biological_region 975 975 0.999 + . logic_name=eponine scaffold_58 . biological_region 1027 1029 0.999 - . logic_name=eponine scaffold_58 . repeat_region 1218 7143 . ? . description=dust scaffold_58 . biological_region 7286 7293 0.999 + . logic_name=eponine scaffold_58 . biological_region 7322 7329 0.999 - . logic_name=eponine scaffold_58 . biological_region 7377 7382 0.999 - . logic_name=eponine scaffold_58 . biological_region 7399 7400 0.999 - . logic_name=eponine scaffold_58 . biological_region 7564 7566 0.999 - . logic_name=eponine scaffold_58 . biological_region 7686 7687 0.999 - . logic_name=eponine scaffold_58 . biological_region 7750 7755 0.999 - . logic_name=eponine scaffold_58 . biological_region 7901 7901 0.999 - . logic_name=eponine scaffold_58 . biological_region 7932 7933 0.999 - . logic_name=eponine scaffold_58 . biological_region 7989 7991 0.999 + . logic_name=eponine scaffold_58 . biological_region 8005 8007 0.999 + . logic_name=eponine scaffold_58 . biological_region 8058 8061 0.999 - . logic_name=eponine scaffold_58 . biological_region 8224 8226 0.999 + . logic_name=eponine scaffold_58 . repeat_region 8266 8311 . ? . description=trf scaffold_58 . biological_region 8450 8453 0.999 - . logic_name=eponine scaffold_58 . repeat_region 8516 8565 . ? . description=dust scaffold_58 . biological_region 8620 8627 0.999 + . logic_name=eponine scaffold_58 . biological_region 8656 8664 0.999 - . logic_name=eponine scaffold_58 . biological_region 8710 8716 0.999 - . logic_name=eponine scaffold_58 . biological_region 8733 8735 0.999 - . logic_name=eponine scaffold_58 . biological_region 8898 8900 0.999 - . logic_name=eponine scaffold_58 . biological_region 9084 9089 0.999 - . logic_name=eponine scaffold_58 . biological_region 9323 9325 0.999 + . logic_name=eponine scaffold_58 . biological_region 9339 9341 0.999 + . logic_name=eponine scaffold_58 . biological_region 9392 9395 0.999 - . logic_name=eponine scaffold_58 . biological_region 9559 9559 0.999 + . logic_name=eponine scaffold_58 . repeat_region 9600 9645 . ? . description=trf scaffold_58 . repeat_region 9672 29055 . ? . description=dust scaffold_58 ensembl protein_coding_gene 61 48262 . - . ID=Physo157707;biotype=protein_coding;external_name=C_scaffold_58000001;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 61 48262 . - . ID=Physo157707;Parent=Physo157707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 61 1198 . - 0 ID=Physo157707;Parent=Physo157707;rank=30 scaffold_58 . exon 61 1198 . - . ID=Physo157707.30;Parent=Physo157707;constitutive=1;ensembl_phase=2;rank=30 scaffold_58 . CDS 7147 8446 . - 0 ID=Physo157707;Parent=Physo157707;rank=29 scaffold_58 . exon 7147 8446 . - . ID=Physo157707.29;Parent=Physo157707;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=29 scaffold_58 . CDS 8569 9591 . - 0 ID=Physo157707;Parent=Physo157707;rank=28 scaffold_58 . exon 8569 9591 . - . ID=Physo157707.28;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=28 scaffold_58 . CDS 32345 33675 . - 0 ID=Physo157707;Parent=Physo157707;rank=27 scaffold_58 . CDS 33751 34794 . - 0 ID=Physo157707;Parent=Physo157707;rank=26 scaffold_58 . CDS 34828 35023 . - 0 ID=Physo157707;Parent=Physo157707;rank=25 scaffold_58 . CDS 36289 36443 . - 0 ID=Physo157707;Parent=Physo157707;rank=24 scaffold_58 . CDS 36486 36884 . - 0 ID=Physo157707;Parent=Physo157707;rank=23 scaffold_58 . CDS 36912 37083 . - 0 ID=Physo157707;Parent=Physo157707;rank=22 scaffold_58 . CDS 37150 37266 . - 0 ID=Physo157707;Parent=Physo157707;rank=21 scaffold_58 . CDS 37444 37519 . - 0 ID=Physo157707;Parent=Physo157707;rank=20 scaffold_58 . CDS 37694 38326 . - 0 ID=Physo157707;Parent=Physo157707;rank=19 scaffold_58 . CDS 38351 38470 . - 0 ID=Physo157707;Parent=Physo157707;rank=18 scaffold_58 . CDS 38618 38785 . - 0 ID=Physo157707;Parent=Physo157707;rank=17 scaffold_58 . CDS 38900 39024 . - 0 ID=Physo157707;Parent=Physo157707;rank=16 scaffold_58 . CDS 39112 39267 . - 0 ID=Physo157707;Parent=Physo157707;rank=15 scaffold_58 . CDS 39394 39609 . - 0 ID=Physo157707;Parent=Physo157707;rank=14 scaffold_58 . CDS 39637 40686 . - 0 ID=Physo157707;Parent=Physo157707;rank=13 scaffold_58 . CDS 40720 42028 . - 0 ID=Physo157707;Parent=Physo157707;rank=12 scaffold_58 . CDS 42062 42885 . - 0 ID=Physo157707;Parent=Physo157707;rank=11 scaffold_58 . CDS 42962 43153 . - 0 ID=Physo157707;Parent=Physo157707;rank=10 scaffold_58 . CDS 43175 43543 . - 0 ID=Physo157707;Parent=Physo157707;rank=9 scaffold_58 . CDS 43604 43975 . - 0 ID=Physo157707;Parent=Physo157707;rank=8 scaffold_58 . CDS 44057 44254 . - 0 ID=Physo157707;Parent=Physo157707;rank=7 scaffold_58 . CDS 44381 44983 . - 0 ID=Physo157707;Parent=Physo157707;rank=6 scaffold_58 . CDS 45062 46168 . - 0 ID=Physo157707;Parent=Physo157707;rank=5 scaffold_58 . CDS 46211 47077 . - 0 ID=Physo157707;Parent=Physo157707;rank=4 scaffold_58 . CDS 47099 47611 . - 0 ID=Physo157707;Parent=Physo157707;rank=3 scaffold_58 . CDS 47698 48013 . - 0 ID=Physo157707;Parent=Physo157707;rank=2 scaffold_58 . CDS 48089 48262 . - 0 ID=Physo157707;Parent=Physo157707;rank=1 scaffold_58 . repeat_region 9672 29055 . ? . description=dust scaffold_58 . repeat_region 29056 32315 . ? . description=dust scaffold_58 ensembl protein_coding_gene 61 48262 . - . ID=Physo157707;biotype=protein_coding;external_name=C_scaffold_58000001;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 61 48262 . - . ID=Physo157707;Parent=Physo157707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 61 1198 . - 0 ID=Physo157707;Parent=Physo157707;rank=30 scaffold_58 . CDS 7147 8446 . - 0 ID=Physo157707;Parent=Physo157707;rank=29 scaffold_58 . CDS 8569 9591 . - 0 ID=Physo157707;Parent=Physo157707;rank=28 scaffold_58 . CDS 32345 33675 . - 0 ID=Physo157707;Parent=Physo157707;rank=27 scaffold_58 . CDS 33751 34794 . - 0 ID=Physo157707;Parent=Physo157707;rank=26 scaffold_58 . CDS 34828 35023 . - 0 ID=Physo157707;Parent=Physo157707;rank=25 scaffold_58 . CDS 36289 36443 . - 0 ID=Physo157707;Parent=Physo157707;rank=24 scaffold_58 . CDS 36486 36884 . - 0 ID=Physo157707;Parent=Physo157707;rank=23 scaffold_58 . CDS 36912 37083 . - 0 ID=Physo157707;Parent=Physo157707;rank=22 scaffold_58 . CDS 37150 37266 . - 0 ID=Physo157707;Parent=Physo157707;rank=21 scaffold_58 . CDS 37444 37519 . - 0 ID=Physo157707;Parent=Physo157707;rank=20 scaffold_58 . CDS 37694 38326 . - 0 ID=Physo157707;Parent=Physo157707;rank=19 scaffold_58 . CDS 38351 38470 . - 0 ID=Physo157707;Parent=Physo157707;rank=18 scaffold_58 . CDS 38618 38785 . - 0 ID=Physo157707;Parent=Physo157707;rank=17 scaffold_58 . CDS 38900 39024 . - 0 ID=Physo157707;Parent=Physo157707;rank=16 scaffold_58 . CDS 39112 39267 . - 0 ID=Physo157707;Parent=Physo157707;rank=15 scaffold_58 . CDS 39394 39609 . - 0 ID=Physo157707;Parent=Physo157707;rank=14 scaffold_58 . CDS 39637 40686 . - 0 ID=Physo157707;Parent=Physo157707;rank=13 scaffold_58 . CDS 40720 42028 . - 0 ID=Physo157707;Parent=Physo157707;rank=12 scaffold_58 . CDS 42062 42885 . - 0 ID=Physo157707;Parent=Physo157707;rank=11 scaffold_58 . CDS 42962 43153 . - 0 ID=Physo157707;Parent=Physo157707;rank=10 scaffold_58 . CDS 43175 43543 . - 0 ID=Physo157707;Parent=Physo157707;rank=9 scaffold_58 . CDS 43604 43975 . - 0 ID=Physo157707;Parent=Physo157707;rank=8 scaffold_58 . CDS 44057 44254 . - 0 ID=Physo157707;Parent=Physo157707;rank=7 scaffold_58 . CDS 44381 44983 . - 0 ID=Physo157707;Parent=Physo157707;rank=6 scaffold_58 . CDS 45062 46168 . - 0 ID=Physo157707;Parent=Physo157707;rank=5 scaffold_58 . CDS 46211 47077 . - 0 ID=Physo157707;Parent=Physo157707;rank=4 scaffold_58 . CDS 47099 47611 . - 0 ID=Physo157707;Parent=Physo157707;rank=3 scaffold_58 . CDS 47698 48013 . - 0 ID=Physo157707;Parent=Physo157707;rank=2 scaffold_58 . CDS 48089 48262 . - 0 ID=Physo157707;Parent=Physo157707;rank=1 scaffold_58 . biological_region 32470 32475 0.999 - . logic_name=eponine scaffold_58 . biological_region 32528 32532 0.999 + . logic_name=eponine scaffold_58 . biological_region 32718 32723 0.999 - . logic_name=eponine scaffold_58 . biological_region 32811 32812 0.999 - . logic_name=eponine scaffold_58 . biological_region 32931 32932 0.999 - . logic_name=eponine scaffold_58 . biological_region 33172 33180 0.999 + . logic_name=eponine scaffold_58 . biological_region 33208 33218 0.999 - . logic_name=eponine scaffold_58 . biological_region 33222 33223 0.999 + . logic_name=eponine scaffold_58 . biological_region 33263 33270 0.999 - . logic_name=eponine scaffold_58 . biological_region 33285 33288 0.999 - . logic_name=eponine scaffold_58 . biological_region 33450 33454 0.999 - . logic_name=eponine scaffold_58 . biological_region 33638 33641 0.999 - . logic_name=eponine scaffold_58 . biological_region 33876 33878 0.999 + . logic_name=eponine scaffold_58 . biological_region 33892 33894 0.999 + . logic_name=eponine scaffold_58 . biological_region 33945 33948 0.999 - . logic_name=eponine scaffold_58 . biological_region 34111 34113 0.999 + . logic_name=eponine scaffold_58 . repeat_region 34153 34198 . ? . description=trf scaffold_58 . biological_region 34338 34338 0.999 - . logic_name=eponine scaffold_58 . biological_region 34387 34388 0.999 - . logic_name=eponine scaffold_58 . biological_region 34537 34538 0.999 - . logic_name=eponine scaffold_58 . repeat_region 34672 34721 . ? . description=trf scaffold_58 . biological_region 34949 34952 0.999 - . logic_name=eponine scaffold_58 . biological_region 36433 36435 0.999 - . logic_name=eponine scaffold_58 . biological_region 36676 36683 0.999 + . logic_name=eponine scaffold_58 . biological_region 36712 36720 0.999 - . logic_name=eponine scaffold_58 . biological_region 36766 36772 0.999 - . logic_name=eponine scaffold_58 . biological_region 36789 36791 0.999 - . logic_name=eponine scaffold_58 . biological_region 36952 36957 0.999 - . logic_name=eponine scaffold_58 . exon 32345 33675 . - . ID=Physo157707.27;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=27 scaffold_58 . exon 33751 34794 . - . ID=Physo157707.26;Parent=Physo157707;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=26 scaffold_58 . exon 34828 35023 . - . ID=Physo157707.25;Parent=Physo157707;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=25 scaffold_58 . exon 36289 36443 . - . ID=Physo157707.24;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=24 scaffold_58 . exon 36486 36884 . - . ID=Physo157707.23;Parent=Physo157707;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=23 scaffold_58 . exon 36912 37083 . - . ID=Physo157707.22;Parent=Physo157707;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=22 scaffold_58 . exon 37150 37266 . - . ID=Physo157707.21;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=21 scaffold_58 . exon 37444 37519 . - . ID=Physo157707.20;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;rank=20 scaffold_58 . exon 37694 38326 . - . ID=Physo157707.19;Parent=Physo157707;constitutive=1;rank=19 scaffold_58 . exon 38351 38470 . - . ID=Physo157707.18;Parent=Physo157707;constitutive=1;rank=18 scaffold_58 . exon 38618 38785 . - . ID=Physo157707.17;Parent=Physo157707;constitutive=1;rank=17 scaffold_58 . exon 38900 39024 . - . ID=Physo157707.16;Parent=Physo157707;constitutive=1;ensembl_phase=1;rank=16 scaffold_58 . exon 39112 39267 . - . ID=Physo157707.15;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_58 . exon 39394 39609 . - . ID=Physo157707.14;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_58 . repeat_region 48301 48356 . ? . description=dust scaffold_58 ensembl protein_coding_gene 61 48262 . - . ID=Physo157707;biotype=protein_coding;external_name=C_scaffold_58000001;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 61 48262 . - . ID=Physo157707;Parent=Physo157707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 61 1198 . - 0 ID=Physo157707;Parent=Physo157707;rank=30 scaffold_58 . CDS 7147 8446 . - 0 ID=Physo157707;Parent=Physo157707;rank=29 scaffold_58 . CDS 8569 9591 . - 0 ID=Physo157707;Parent=Physo157707;rank=28 scaffold_58 . CDS 32345 33675 . - 0 ID=Physo157707;Parent=Physo157707;rank=27 scaffold_58 . CDS 33751 34794 . - 0 ID=Physo157707;Parent=Physo157707;rank=26 scaffold_58 . CDS 34828 35023 . - 0 ID=Physo157707;Parent=Physo157707;rank=25 scaffold_58 . CDS 36289 36443 . - 0 ID=Physo157707;Parent=Physo157707;rank=24 scaffold_58 . CDS 36486 36884 . - 0 ID=Physo157707;Parent=Physo157707;rank=23 scaffold_58 . CDS 36912 37083 . - 0 ID=Physo157707;Parent=Physo157707;rank=22 scaffold_58 . CDS 37150 37266 . - 0 ID=Physo157707;Parent=Physo157707;rank=21 scaffold_58 . CDS 37444 37519 . - 0 ID=Physo157707;Parent=Physo157707;rank=20 scaffold_58 . CDS 37694 38326 . - 0 ID=Physo157707;Parent=Physo157707;rank=19 scaffold_58 . CDS 38351 38470 . - 0 ID=Physo157707;Parent=Physo157707;rank=18 scaffold_58 . CDS 38618 38785 . - 0 ID=Physo157707;Parent=Physo157707;rank=17 scaffold_58 . CDS 38900 39024 . - 0 ID=Physo157707;Parent=Physo157707;rank=16 scaffold_58 . CDS 39112 39267 . - 0 ID=Physo157707;Parent=Physo157707;rank=15 scaffold_58 . CDS 39394 39609 . - 0 ID=Physo157707;Parent=Physo157707;rank=14 scaffold_58 . CDS 39637 40686 . - 0 ID=Physo157707;Parent=Physo157707;rank=13 scaffold_58 . exon 39637 40686 . - . ID=Physo157707.13;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_58 . CDS 40720 42028 . - 0 ID=Physo157707;Parent=Physo157707;rank=12 scaffold_58 . exon 40720 42028 . - . ID=Physo157707.12;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_58 . CDS 42062 42885 . - 0 ID=Physo157707;Parent=Physo157707;rank=11 scaffold_58 . exon 42062 42885 . - . ID=Physo157707.11;Parent=Physo157707;constitutive=1;ensembl_phase=1;rank=11 scaffold_58 . CDS 42962 43153 . - 0 ID=Physo157707;Parent=Physo157707;rank=10 scaffold_58 . exon 42962 43153 . - . ID=Physo157707.10;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_58 . CDS 43175 43543 . - 0 ID=Physo157707;Parent=Physo157707;rank=9 scaffold_58 . exon 43175 43543 . - . ID=Physo157707.9;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_58 . CDS 43604 43975 . - 0 ID=Physo157707;Parent=Physo157707;rank=8 scaffold_58 . exon 43604 43975 . - . ID=Physo157707.8;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_58 . CDS 44057 44254 . - 0 ID=Physo157707;Parent=Physo157707;rank=7 scaffold_58 . exon 44057 44254 . - . ID=Physo157707.7;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_58 . CDS 44381 44983 . - 0 ID=Physo157707;Parent=Physo157707;rank=6 scaffold_58 . exon 44381 44983 . - . ID=Physo157707.6;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_58 . CDS 45062 46168 . - 0 ID=Physo157707;Parent=Physo157707;rank=5 scaffold_58 . exon 45062 46168 . - . ID=Physo157707.5;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_58 . CDS 46211 47077 . - 0 ID=Physo157707;Parent=Physo157707;rank=4 scaffold_58 . exon 46211 47077 . - . ID=Physo157707.4;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 47099 47611 . - 0 ID=Physo157707;Parent=Physo157707;rank=3 scaffold_58 . exon 47099 47611 . - . ID=Physo157707.3;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 47698 48013 . - 0 ID=Physo157707;Parent=Physo157707;rank=2 scaffold_58 . exon 47698 48013 . - . ID=Physo157707.2;Parent=Physo157707;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 48089 48262 . - 0 ID=Physo157707;Parent=Physo157707;rank=1 scaffold_58 . exon 48089 48262 . - . ID=Physo157707.1;Parent=Physo157707;constitutive=1;rank=1 scaffold_58 . biological_region 49525 49526 0.999 + . logic_name=eponine scaffold_58 . repeat_region 50834 50875 . ? . description=trf scaffold_58 . biological_region 52540 52541 0.999 - . logic_name=eponine scaffold_58 . repeat_region 52599 52640 . ? . description=trf scaffold_58 . biological_region 53458 53465 0.999 - . logic_name=eponine scaffold_58 . biological_region 55574 55575 0.999 + . logic_name=eponine scaffold_58 . repeat_region 55871 55916 . ? . description=trf scaffold_58 . biological_region 55915 55917 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 49799 50653 . - . ID=Physo137829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580002;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 49799 50653 . - . ID=Physo137829;Parent=Physo137829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 49799 50653 . - 0 ID=Physo137829;Parent=Physo137829;rank=1 scaffold_58 . exon 49799 50653 . - . ID=Physo137829.1;Parent=Physo137829;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 51412 52266 . + . ID=Physo137830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580003;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 51412 52266 . + . ID=Physo137830;Parent=Physo137830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 51412 52266 . + 0 ID=Physo137830;Parent=Physo137830;rank=1 scaffold_58 . exon 51412 52266 . + . ID=Physo137830.1;Parent=Physo137830;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 55590 56227 . + . ID=Physo137831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580004;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 55590 56227 . + . ID=Physo137831;Parent=Physo137831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 55590 55967 . + 0 ID=Physo137831;Parent=Physo137831;rank=1 scaffold_58 . exon 55590 55967 . + . ID=Physo137831.1;Parent=Physo137831;constitutive=1;rank=1 scaffold_58 . CDS 56048 56227 . + 0 ID=Physo137831;Parent=Physo137831;rank=2 scaffold_58 . exon 56048 56227 . + . ID=Physo137831.2;Parent=Physo137831;constitutive=1;rank=2 scaffold_58 ensembl protein_coding_gene 57233 59183 . + . ID=Physo157708;biotype=protein_coding;external_name=C_scaffold_58000002;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 57233 59183 . + . ID=Physo157708;Parent=Physo157708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 57233 57282 . + 0 ID=Physo157708;Parent=Physo157708;rank=1 scaffold_58 . exon 57233 57282 . + . ID=Physo157708.1;Parent=Physo157708;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 57342 57405 . + 0 ID=Physo157708;Parent=Physo157708;rank=2 scaffold_58 . exon 57342 57405 . + . ID=Physo157708.2;Parent=Physo157708;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 57754 57786 . + 0 ID=Physo157708;Parent=Physo157708;rank=3 scaffold_58 . exon 57754 57786 . + . ID=Physo157708.3;Parent=Physo157708;constitutive=1;rank=3 scaffold_58 . CDS 58318 58531 . + 0 ID=Physo157708;Parent=Physo157708;rank=4 scaffold_58 . exon 58318 58531 . + . ID=Physo157708.4;Parent=Physo157708;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_58 . CDS 58592 58650 . + 0 ID=Physo157708;Parent=Physo157708;rank=5 scaffold_58 . exon 58592 58650 . + . ID=Physo157708.5;Parent=Physo157708;constitutive=1;ensembl_phase=1;rank=5 scaffold_58 . CDS 58725 59183 . + 0 ID=Physo157708;Parent=Physo157708;rank=6 scaffold_58 . exon 58725 59183 . + . ID=Physo157708.6;Parent=Physo157708;constitutive=1;rank=6 scaffold_58 ensembl protein_coding_gene 59318 60317 . - . ID=Physo157709;biotype=protein_coding;external_name=C_scaffold_58000003;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 59318 60317 . - . ID=Physo157709;Parent=Physo157709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 59318 60034 . - 0 ID=Physo157709;Parent=Physo157709;rank=2 scaffold_58 . exon 59318 60034 . - . ID=Physo157709.2;Parent=Physo157709;constitutive=1;rank=2 scaffold_58 . CDS 60117 60317 . - 0 ID=Physo157709;Parent=Physo157709;rank=1 scaffold_58 . repeat_region 62090 62099 . ? . description=dust scaffold_58 . repeat_region 63755 63810 . ? . description=dust scaffold_58 . repeat_region 66242 66249 . ? . description=dust scaffold_58 ensembl protein_coding_gene 60556 63237 . + . ID=Physo137834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580007;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 60556 63237 . + . ID=Physo137834;Parent=Physo137834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 60556 61046 . + . ID=Physo137834.1;Parent=Physo137834;constitutive=1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 60951 61046 . + 0 ID=Physo137834;Parent=Physo137834;rank=1 scaffold_58 . CDS 61121 61267 . + 0 ID=Physo137834;Parent=Physo137834;rank=2 scaffold_58 . exon 61121 61267 . + . ID=Physo137834.2;Parent=Physo137834;constitutive=1;rank=2 scaffold_58 . CDS 61346 61451 . + 0 ID=Physo137834;Parent=Physo137834;rank=3 scaffold_58 . exon 61346 61451 . + . ID=Physo137834.3;Parent=Physo137834;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_58 . CDS 61513 62084 . + 0 ID=Physo137834;Parent=Physo137834;rank=4 scaffold_58 . exon 61513 62084 . + . ID=Physo137834.4;Parent=Physo137834;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 62148 62473 . + 0 ID=Physo137834;Parent=Physo137834;rank=5 scaffold_58 . exon 62148 62473 . + . ID=Physo137834.5;Parent=Physo137834;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_58 . CDS 62541 62808 . + 0 ID=Physo137834;Parent=Physo137834;rank=6 scaffold_58 . exon 62541 62808 . + . ID=Physo137834.6;Parent=Physo137834;constitutive=1;ensembl_phase=2;rank=6 scaffold_58 . CDS 62879 62959 . + 0 ID=Physo137834;Parent=Physo137834;rank=7 scaffold_58 . exon 62879 62959 . + . ID=Physo137834.7;Parent=Physo137834;constitutive=1;rank=7 scaffold_58 . CDS 63037 63237 . + 0 ID=Physo137834;Parent=Physo137834;rank=8 scaffold_58 . exon 63037 63237 . + . ID=Physo137834.8;Parent=Physo137834;constitutive=1;rank=8 scaffold_58 ensembl protein_coding_gene 63741 65542 . + . ID=Physo137835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580008;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 63741 65542 . + . ID=Physo137835;Parent=Physo137835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 63741 65465 . + 0 ID=Physo137835;Parent=Physo137835;rank=1 scaffold_58 . exon 63741 65542 . + . ID=Physo137835.1;Parent=Physo137835;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 66718 67152 . + . ID=Physo137836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580009;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 66718 67152 . + . ID=Physo137836;Parent=Physo137836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 66718 67152 . + 0 ID=Physo137836;Parent=Physo137836;rank=1 scaffold_58 . exon 66718 67152 . + . ID=Physo137836.1;Parent=Physo137836;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 68705 69880 . + . ID=Physo137837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580010;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 68705 69880 . + . ID=Physo137837;Parent=Physo137837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 68705 69650 . + 0 ID=Physo137837;Parent=Physo137837;rank=1 scaffold_58 . exon 68705 69650 . + . ID=Physo137837.1;Parent=Physo137837;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 69744 69880 . + 0 ID=Physo137837;Parent=Physo137837;rank=2 scaffold_58 . exon 60117 60317 . - . ID=Physo157709.1;Parent=Physo157709;constitutive=1;rank=1 scaffold_58 . repeat_region 69260 69372 . ? . description=trf scaffold_58 . repeat_region 69316 69394 . ? . description=trf scaffold_58 . biological_region 69583 69586 0.999 - . logic_name=eponine scaffold_58 . repeat_region 70210 70229 . ? . description=trf scaffold_58 . repeat_region 73143 73176 . ? . description=trf scaffold_58 . biological_region 78007 78008 0.999 - . logic_name=eponine scaffold_58 ensembl tRNA_gene 73242 73312 . - . ID=EPrPSOG00000000096;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_58 ensembl transcript 73242 73312 . - . ID=EPrPSOT00000000096;Parent=EPrPSOG00000000096;biotype=tRNA;logic_name=ncrna_eg scaffold_58 . exon 73242 73312 . - . ID=EPrPSOE00000000096;Parent=EPrPSOT00000000096;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . exon 69744 69880 . + . ID=Physo137837.2;Parent=Physo137837;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 ensembl protein_coding_gene 70987 73260 . + . ID=Physo137838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580011;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 70987 73260 . + . ID=Physo137838;Parent=Physo137838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 70987 71032 . + 0 ID=Physo137838;Parent=Physo137838;rank=1 scaffold_58 . exon 70987 71032 . + . ID=Physo137838.1;Parent=Physo137838;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 71258 71909 . + 0 ID=Physo137838;Parent=Physo137838;rank=2 scaffold_58 . exon 71258 71909 . + . ID=Physo137838.2;Parent=Physo137838;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_58 . CDS 71940 72296 . + 0 ID=Physo137838;Parent=Physo137838;rank=3 scaffold_58 . exon 71940 72296 . + . ID=Physo137838.3;Parent=Physo137838;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_58 . CDS 72551 72947 . + 0 ID=Physo137838;Parent=Physo137838;rank=4 scaffold_58 . exon 72551 72947 . + . ID=Physo137838.4;Parent=Physo137838;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 73009 73260 . + 0 ID=Physo137838;Parent=Physo137838;rank=5 scaffold_58 . exon 73009 73260 . + . ID=Physo137838.5;Parent=Physo137838;constitutive=1;rank=5 scaffold_58 . repeat_region 84068 84080 . ? . description=dust scaffold_58 ensembl protein_coding_gene 86320 88465 . - . ID=Physo137839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580012;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 86320 88465 . - . ID=Physo137839;Parent=Physo137839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 86320 86836 . - . ID=Physo137839.2;Parent=Physo137839;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_58 . CDS 86654 86836 . - 0 ID=Physo137839;Parent=Physo137839;rank=2 scaffold_58 . CDS 87076 88461 . - 0 ID=Physo137839;Parent=Physo137839;rank=1 scaffold_58 . exon 87076 88465 . - . ID=Physo137839.1;Parent=Physo137839;constitutive=1;ensembl_phase=-1;rank=1 scaffold_58 . biological_region 90680 90682 0.999 - . logic_name=eponine scaffold_58 . biological_region 93037 93042 0.999 + . logic_name=eponine scaffold_58 . biological_region 93079 93080 0.999 + . logic_name=eponine scaffold_58 . biological_region 94394 94396 0.999 - . logic_name=eponine scaffold_58 . biological_region 95067 95069 0.999 - . logic_name=eponine scaffold_58 . repeat_region 97656 97680 . ? . description=trf scaffold_58 . biological_region 97760 97765 0.999 - . logic_name=eponine scaffold_58 . repeat_region 97879 97898 . ? . description=trf scaffold_58 . biological_region 98203 98203 0.999 + . logic_name=eponine scaffold_58 . biological_region 98267 98268 0.999 + . logic_name=eponine scaffold_58 . biological_region 98299 98304 0.999 + . logic_name=eponine scaffold_58 . biological_region 98360 98360 0.999 + . logic_name=eponine scaffold_58 . biological_region 98941 98941 0.999 - . logic_name=eponine scaffold_58 . biological_region 99000 99004 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 92504 92878 . - . ID=Physo137840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580013;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 92504 92878 . - . ID=Physo137840;Parent=Physo137840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 92504 92878 . - 0 ID=Physo137840;Parent=Physo137840;rank=1 scaffold_58 . exon 92504 92878 . - . ID=Physo137840.1;Parent=Physo137840;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 96514 97739 . + . ID=Physo137842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580015;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 96514 97739 . + . ID=Physo137842;Parent=Physo137842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 96514 97074 . + 0 ID=Physo137842;Parent=Physo137842;rank=1 scaffold_58 . exon 96514 97074 . + . ID=Physo137842.1;Parent=Physo137842;constitutive=1;rank=1 scaffold_58 . CDS 97157 97193 . + 0 ID=Physo137842;Parent=Physo137842;rank=2 scaffold_58 . exon 97157 97193 . + . ID=Physo137842.2;Parent=Physo137842;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 97276 97343 . + 0 ID=Physo137842;Parent=Physo137842;rank=3 scaffold_58 . exon 97276 97343 . + . ID=Physo137842.3;Parent=Physo137842;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 97449 97553 . + 0 ID=Physo137842;Parent=Physo137842;rank=4 scaffold_58 . exon 97449 97553 . + . ID=Physo137842.4;Parent=Physo137842;constitutive=1;rank=4 scaffold_58 . CDS 97686 97739 . + 0 ID=Physo137842;Parent=Physo137842;rank=5 scaffold_58 . exon 97686 97739 . + . ID=Physo137842.5;Parent=Physo137842;constitutive=1;rank=5 scaffold_58 ensembl protein_coding_gene 98373 103078 . + . ID=Physo137843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580016;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 98373 103078 . + . ID=Physo137843;Parent=Physo137843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 98373 102806 . + 0 ID=Physo137843;Parent=Physo137843;rank=1 scaffold_58 . exon 98373 103078 . + . ID=Physo137843.1;Parent=Physo137843;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 94291 96320 . + . ID=Physo157712;biotype=protein_coding;external_name=C_scaffold_58000006;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 94291 96320 . + . ID=Physo157712;Parent=Physo157712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 94291 94436 . + 0 ID=Physo157712;Parent=Physo157712;rank=1 scaffold_58 . exon 94291 94436 . + . ID=Physo157712.1;Parent=Physo157712;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 94522 94827 . + 0 ID=Physo157712;Parent=Physo157712;rank=2 scaffold_58 . exon 94522 94827 . + . ID=Physo157712.2;Parent=Physo157712;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_58 . CDS 94902 95403 . + 0 ID=Physo157712;Parent=Physo157712;rank=3 scaffold_58 . exon 94902 95403 . + . ID=Physo157712.3;Parent=Physo157712;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 95473 95598 . + 0 ID=Physo157712;Parent=Physo157712;rank=4 scaffold_58 . exon 95473 95598 . + . ID=Physo157712.4;Parent=Physo157712;constitutive=1;rank=4 scaffold_58 . CDS 95677 95760 . + 0 ID=Physo157712;Parent=Physo157712;rank=5 scaffold_58 . exon 95677 95760 . + . ID=Physo157712.5;Parent=Physo157712;constitutive=1;rank=5 scaffold_58 . CDS 95831 96105 . + 0 ID=Physo157712;Parent=Physo157712;rank=6 scaffold_58 . exon 95831 96105 . + . ID=Physo157712.6;Parent=Physo157712;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_58 . CDS 96191 96320 . + 0 ID=Physo157712;Parent=Physo157712;rank=7 scaffold_58 . exon 96191 96320 . + . ID=Physo157712.7;Parent=Physo157712;constitutive=1;ensembl_phase=2;rank=7 scaffold_58 ensembl protein_coding_gene 103201 104748 . - . ID=Physo137844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580017;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 103201 104748 . - . ID=Physo137844;Parent=Physo137844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 103201 104748 . - 0 ID=Physo137844;Parent=Physo137844;rank=1 scaffold_58 . exon 103201 104748 . - . ID=Physo137844.1;Parent=Physo137844;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 105246 108369 . - . ID=Physo137845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580018;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 105246 108369 . - . ID=Physo137845;Parent=Physo137845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 105246 105743 . - 0 ID=Physo137845;Parent=Physo137845;rank=5 scaffold_58 . exon 105246 105743 . - . ID=Physo137845.5;Parent=Physo137845;constitutive=1;rank=5 scaffold_58 . CDS 105808 106525 . - 0 ID=Physo137845;Parent=Physo137845;rank=4 scaffold_58 . exon 105808 106525 . - . ID=Physo137845.4;Parent=Physo137845;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 106606 106970 . - 0 ID=Physo137845;Parent=Physo137845;rank=3 scaffold_58 . exon 106606 106970 . - . ID=Physo137845.3;Parent=Physo137845;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_58 . CDS 107123 107441 . - 0 ID=Physo137845;Parent=Physo137845;rank=2 scaffold_58 . exon 107123 107441 . - . ID=Physo137845.2;Parent=Physo137845;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 107510 108369 . - 0 ID=Physo137845;Parent=Physo137845;rank=1 scaffold_58 . exon 107510 108369 . - . ID=Physo137845.1;Parent=Physo137845;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 108682 113417 . + . ID=Physo137846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580019;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 108682 113417 . + . ID=Physo137846;Parent=Physo137846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 108682 108895 . + 0 ID=Physo137846;Parent=Physo137846;rank=1 scaffold_58 . exon 108682 108895 . + . ID=Physo137846.1;Parent=Physo137846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 108982 109189 . + 0 ID=Physo137846;Parent=Physo137846;rank=2 scaffold_58 . CDS 109283 109439 . + 0 ID=Physo137846;Parent=Physo137846;rank=3 scaffold_58 . CDS 109547 109846 . + 0 ID=Physo137846;Parent=Physo137846;rank=4 scaffold_58 . CDS 110002 110455 . + 0 ID=Physo137846;Parent=Physo137846;rank=5 scaffold_58 . CDS 110539 111415 . + 0 ID=Physo137846;Parent=Physo137846;rank=6 scaffold_58 . CDS 111488 111567 . + 0 ID=Physo137846;Parent=Physo137846;rank=7 scaffold_58 . CDS 111682 111903 . + 0 ID=Physo137846;Parent=Physo137846;rank=8 scaffold_58 . CDS 112021 112281 . + 0 ID=Physo137846;Parent=Physo137846;rank=9 scaffold_58 . CDS 112567 113417 . + 0 ID=Physo137846;Parent=Physo137846;rank=10 scaffold_58 . repeat_region 109914 109922 . ? . description=dust scaffold_58 . biological_region 110104 110109 0.999 + . logic_name=eponine scaffold_58 . repeat_region 110501 110535 . ? . description=dust scaffold_58 . biological_region 113386 113387 0.999 - . logic_name=eponine scaffold_58 . repeat_region 117952 117975 . ? . description=trf scaffold_58 . biological_region 118557 118559 0.999 - . logic_name=eponine scaffold_58 . exon 108982 109189 . + . ID=Physo137846.2;Parent=Physo137846;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_58 . exon 109283 109439 . + . ID=Physo137846.3;Parent=Physo137846;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . exon 109547 109846 . + . ID=Physo137846.4;Parent=Physo137846;constitutive=1;rank=4 scaffold_58 . exon 110002 110455 . + . ID=Physo137846.5;Parent=Physo137846;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_58 . exon 110539 111415 . + . ID=Physo137846.6;Parent=Physo137846;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_58 . exon 111488 111567 . + . ID=Physo137846.7;Parent=Physo137846;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_58 . exon 111682 111903 . + . ID=Physo137846.8;Parent=Physo137846;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_58 . exon 112021 112281 . + . ID=Physo137846.9;Parent=Physo137846;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_58 . exon 112567 113417 . + . ID=Physo137846.10;Parent=Physo137846;constitutive=1;ensembl_phase=1;rank=10 scaffold_58 ensembl protein_coding_gene 114130 114786 . + . ID=Physo137847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580020;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 114130 114786 . + . ID=Physo137847;Parent=Physo137847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 114130 114786 . + 0 ID=Physo137847;Parent=Physo137847;rank=1 scaffold_58 . exon 114130 114786 . + . ID=Physo137847.1;Parent=Physo137847;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 116178 117437 . - . ID=Physo137848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580021;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 116178 117437 . - . ID=Physo137848;Parent=Physo137848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 116178 117437 . - 0 ID=Physo137848;Parent=Physo137848;rank=1 scaffold_58 . exon 116178 117437 . - . ID=Physo137848.1;Parent=Physo137848;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 118335 120010 . + . ID=Physo137849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580022;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 118335 120010 . + . ID=Physo137849;Parent=Physo137849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 118335 118613 . + 0 ID=Physo137849;Parent=Physo137849;rank=1 scaffold_58 . exon 118335 118613 . + . ID=Physo137849.1;Parent=Physo137849;constitutive=1;rank=1 scaffold_58 . CDS 118696 118735 . + 0 ID=Physo137849;Parent=Physo137849;rank=2 scaffold_58 . exon 118696 118735 . + . ID=Physo137849.2;Parent=Physo137849;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 118807 118908 . + 0 ID=Physo137849;Parent=Physo137849;rank=3 scaffold_58 . exon 118807 118908 . + . ID=Physo137849.3;Parent=Physo137849;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 119001 119479 . + 0 ID=Physo137849;Parent=Physo137849;rank=4 scaffold_58 . CDS 119543 119717 . + 0 ID=Physo137849;Parent=Physo137849;rank=5 scaffold_58 . CDS 119790 120010 . + 0 ID=Physo137849;Parent=Physo137849;rank=6 scaffold_58 . exon 119001 119479 . + . ID=Physo137849.4;Parent=Physo137849;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 . exon 119543 119717 . + . ID=Physo137849.5;Parent=Physo137849;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_58 . exon 119790 120010 . + . ID=Physo137849.6;Parent=Physo137849;constitutive=1;ensembl_phase=1;rank=6 scaffold_58 ensembl protein_coding_gene 120578 121376 . + . ID=Physo137850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580023;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 120578 121376 . + . ID=Physo137850;Parent=Physo137850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 120578 121196 . + 0 ID=Physo137850;Parent=Physo137850;rank=1 scaffold_58 . exon 120578 121196 . + . ID=Physo137850.1;Parent=Physo137850;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 121357 121376 . + 0 ID=Physo137850;Parent=Physo137850;rank=2 scaffold_58 . exon 121357 121376 . + . ID=Physo137850.2;Parent=Physo137850;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 ensembl protein_coding_gene 121608 122250 . - . ID=Physo137851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580024;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 121608 122250 . - . ID=Physo137851;Parent=Physo137851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 121608 122246 . - 0 ID=Physo137851;Parent=Physo137851;rank=1 scaffold_58 . exon 121608 122250 . - . ID=Physo137851.1;Parent=Physo137851;constitutive=1;ensembl_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 126595 128167 . - . ID=Physo137852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580025;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 126595 128167 . - . ID=Physo137852;Parent=Physo137852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 126595 127587 . - 0 ID=Physo137852;Parent=Physo137852;rank=3 scaffold_58 . exon 126595 127587 . - . ID=Physo137852.3;Parent=Physo137852;constitutive=1;rank=3 scaffold_58 . CDS 127667 127790 . - 0 ID=Physo137852;Parent=Physo137852;rank=2 scaffold_58 . exon 127667 127790 . - . ID=Physo137852.2;Parent=Physo137852;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 127881 128167 . - 0 ID=Physo137852;Parent=Physo137852;rank=1 scaffold_58 . exon 127881 128167 . - . ID=Physo137852.1;Parent=Physo137852;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . biological_region 129413 129415 0.999 - . logic_name=eponine scaffold_58 . biological_region 129905 129911 0.999 + . logic_name=eponine scaffold_58 . biological_region 131516 131519 0.999 + . logic_name=eponine scaffold_58 . biological_region 131567 131567 0.999 + . logic_name=eponine scaffold_58 . biological_region 132383 132390 0.999 + . logic_name=eponine scaffold_58 . biological_region 134352 134353 0.999 - . logic_name=eponine scaffold_58 . biological_region 135689 135691 0.999 - . logic_name=eponine scaffold_58 . biological_region 135883 135886 0.999 - . logic_name=eponine scaffold_58 . biological_region 137318 137323 0.999 + . logic_name=eponine scaffold_58 . biological_region 137537 137543 0.999 - . logic_name=eponine scaffold_58 . biological_region 138422 138423 0.999 - . logic_name=eponine scaffold_58 . biological_region 138440 138443 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 136801 137640 . - . ID=Physo109076;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580001;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 136801 137640 . - . ID=Physo109076;Parent=Physo109076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 136801 137640 . - 0 ID=Physo109076;Parent=Physo109076;rank=1 scaffold_58 . exon 136801 137640 . - . ID=Physo109076.1;Parent=Physo109076;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 129142 130072 . - . ID=Physo137853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580026;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 129142 130072 . - . ID=Physo137853;Parent=Physo137853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 129142 129409 . - . ID=Physo137853.4;Parent=Physo137853;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_58 . CDS 129181 129409 . - 0 ID=Physo137853;Parent=Physo137853;rank=4 scaffold_58 . CDS 129479 129706 . - 0 ID=Physo137853;Parent=Physo137853;rank=3 scaffold_58 . exon 129479 129706 . - . ID=Physo137853.3;Parent=Physo137853;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_58 . CDS 129737 129829 . - 0 ID=Physo137853;Parent=Physo137853;rank=2 scaffold_58 . exon 129737 129829 . - . ID=Physo137853.2;Parent=Physo137853;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_58 . CDS 130062 130072 . - 0 ID=Physo137853;Parent=Physo137853;rank=1 scaffold_58 . exon 130062 130072 . - . ID=Physo137853.1;Parent=Physo137853;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 134968 136383 . + . ID=Physo137854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580027;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 134968 136383 . + . ID=Physo137854;Parent=Physo137854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 134968 136383 . + 0 ID=Physo137854;Parent=Physo137854;rank=1 scaffold_58 . exon 134968 136383 . + . ID=Physo137854.1;Parent=Physo137854;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 138308 142230 . + . ID=Physo157717;biotype=protein_coding;external_name=C_scaffold_58000011;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 138308 142230 . + . ID=Physo157717;Parent=Physo157717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 138308 139102 . + 0 ID=Physo157717;Parent=Physo157717;rank=1 scaffold_58 . exon 138308 139102 . + . ID=Physo157717.1;Parent=Physo157717;constitutive=1;rank=1 scaffold_58 . CDS 139187 139436 . + 0 ID=Physo157717;Parent=Physo157717;rank=2 scaffold_58 . CDS 139490 139711 . + 0 ID=Physo157717;Parent=Physo157717;rank=3 scaffold_58 . CDS 139736 139838 . + 0 ID=Physo157717;Parent=Physo157717;rank=4 scaffold_58 . CDS 140269 140370 . + 0 ID=Physo157717;Parent=Physo157717;rank=5 scaffold_58 . CDS 140439 141149 . + 0 ID=Physo157717;Parent=Physo157717;rank=6 scaffold_58 . CDS 141444 142230 . + 0 ID=Physo157717;Parent=Physo157717;rank=7 scaffold_58 . repeat_region 139537 139556 . ? . description=trf scaffold_58 . repeat_region 146206 146225 . ? . description=trf scaffold_58 . repeat_region 146684 146737 . ? . description=dust scaffold_58 . repeat_region 146685 146730 . ? . description=trf scaffold_58 . repeat_region 146685 146736 . ? . description=trf scaffold_58 . repeat_region 147820 147828 . ? . description=dust scaffold_58 ensembl protein_coding_gene 146180 148124 . + . ID=Physo137858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580031;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 146180 148124 . + . ID=Physo137858;Parent=Physo137858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 146180 146324 . + 0 ID=Physo137858;Parent=Physo137858;rank=1 scaffold_58 . exon 146180 146324 . + . ID=Physo137858.1;Parent=Physo137858;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 146401 146447 . + 0 ID=Physo137858;Parent=Physo137858;rank=2 scaffold_58 . exon 146401 146447 . + . ID=Physo137858.2;Parent=Physo137858;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 146517 146879 . + 0 ID=Physo137858;Parent=Physo137858;rank=3 scaffold_58 . exon 146517 146879 . + . ID=Physo137858.3;Parent=Physo137858;constitutive=1;rank=3 scaffold_58 . CDS 146961 147056 . + 0 ID=Physo137858;Parent=Physo137858;rank=4 scaffold_58 . exon 146961 147056 . + . ID=Physo137858.4;Parent=Physo137858;constitutive=1;rank=4 scaffold_58 . CDS 147126 147209 . + 0 ID=Physo137858;Parent=Physo137858;rank=5 scaffold_58 . exon 147126 147209 . + . ID=Physo137858.5;Parent=Physo137858;constitutive=1;rank=5 scaffold_58 . CDS 147280 147383 . + 0 ID=Physo137858;Parent=Physo137858;rank=6 scaffold_58 . exon 147280 147383 . + . ID=Physo137858.6;Parent=Physo137858;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_58 . CDS 147454 147814 . + 0 ID=Physo137858;Parent=Physo137858;rank=7 scaffold_58 . exon 147454 147814 . + . ID=Physo137858.7;Parent=Physo137858;constitutive=1;ensembl_phase=2;rank=7 scaffold_58 . CDS 147885 148124 . + 0 ID=Physo137858;Parent=Physo137858;rank=8 scaffold_58 . exon 147885 148124 . + . ID=Physo137858.8;Parent=Physo137858;constitutive=1;rank=8 scaffold_58 . exon 139187 139436 . + . ID=Physo157717.2;Parent=Physo157717;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . exon 139490 139711 . + . ID=Physo157717.3;Parent=Physo157717;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_58 . exon 139736 139838 . + . ID=Physo157717.4;Parent=Physo157717;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_58 . exon 140269 140370 . + . ID=Physo157717.5;Parent=Physo157717;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_58 . exon 140439 141149 . + . ID=Physo157717.6;Parent=Physo157717;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_58 . exon 141444 142230 . + . ID=Physo157717.7;Parent=Physo157717;constitutive=1;ensembl_phase=2;rank=7 scaffold_58 ensembl protein_coding_gene 142379 146048 . - . ID=Physo157720;biotype=protein_coding;external_name=C_scaffold_58000014;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 142379 146048 . - . ID=Physo157720;Parent=Physo157720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 142379 142731 . - 0 ID=Physo157720;Parent=Physo157720;rank=6 scaffold_58 . exon 142379 142731 . - . ID=Physo157720.6;Parent=Physo157720;constitutive=1;ensembl_phase=1;rank=6 scaffold_58 . CDS 142800 143067 . - 0 ID=Physo157720;Parent=Physo157720;rank=5 scaffold_58 . exon 142800 143067 . - . ID=Physo157720.5;Parent=Physo157720;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_58 . CDS 143150 143748 . - 0 ID=Physo157720;Parent=Physo157720;rank=4 scaffold_58 . exon 143150 143748 . - . ID=Physo157720.4;Parent=Physo157720;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 143914 144462 . - 0 ID=Physo157720;Parent=Physo157720;rank=3 scaffold_58 . exon 143914 144462 . - . ID=Physo157720.3;Parent=Physo157720;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 144554 144714 . - 0 ID=Physo157720;Parent=Physo157720;rank=2 scaffold_58 . exon 144554 144714 . - . ID=Physo157720.2;Parent=Physo157720;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 144739 146048 . - 0 ID=Physo157720;Parent=Physo157720;rank=1 scaffold_58 . exon 144739 146048 . - . ID=Physo157720.1;Parent=Physo157720;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . biological_region 150396 150399 0.999 - . logic_name=eponine scaffold_58 . biological_region 150573 150581 0.999 + . logic_name=eponine scaffold_58 . biological_region 150601 150605 0.999 + . logic_name=eponine scaffold_58 . biological_region 150612 150618 0.999 - . logic_name=eponine scaffold_58 . biological_region 150633 150637 0.999 - . logic_name=eponine scaffold_58 . biological_region 150771 150774 0.999 - . logic_name=eponine scaffold_58 . biological_region 150781 150785 0.999 - . logic_name=eponine scaffold_58 . biological_region 150833 150836 0.999 + . logic_name=eponine scaffold_58 . biological_region 155677 155677 0.999 - . logic_name=eponine scaffold_58 . biological_region 157120 157120 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 149448 149792 . - . ID=Physo137859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580032;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 149448 149792 . - . ID=Physo137859;Parent=Physo137859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 149448 149792 . - 0 ID=Physo137859;Parent=Physo137859;rank=1 scaffold_58 . exon 149448 149792 . - . ID=Physo137859.1;Parent=Physo137859;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 152391 158594 . - . ID=Physo157722;biotype=protein_coding;external_name=C_scaffold_58000016;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 152391 158594 . - . ID=Physo157722;Parent=Physo157722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 152391 152599 . - 0 ID=Physo157722;Parent=Physo157722;rank=9 scaffold_58 . exon 152391 152599 . - . ID=Physo157722.9;Parent=Physo157722;constitutive=1;ensembl_phase=1;rank=9 scaffold_58 . CDS 152657 154802 . - 0 ID=Physo157722;Parent=Physo157722;rank=8 scaffold_58 . exon 152657 154802 . - . ID=Physo157722.8;Parent=Physo157722;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_58 . CDS 154851 155343 . - 0 ID=Physo157722;Parent=Physo157722;rank=7 scaffold_58 . exon 154851 155343 . - . ID=Physo157722.7;Parent=Physo157722;constitutive=1;ensembl_phase=2;rank=7 scaffold_58 . CDS 155377 155899 . - 0 ID=Physo157722;Parent=Physo157722;rank=6 scaffold_58 . exon 155377 155899 . - . ID=Physo157722.6;Parent=Physo157722;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_58 . CDS 155939 156685 . - 0 ID=Physo157722;Parent=Physo157722;rank=5 scaffold_58 . exon 155939 156685 . - . ID=Physo157722.5;Parent=Physo157722;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_58 . CDS 156710 157495 . - 0 ID=Physo157722;Parent=Physo157722;rank=4 scaffold_58 . exon 156710 157495 . - . ID=Physo157722.4;Parent=Physo157722;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 157571 157930 . - 0 ID=Physo157722;Parent=Physo157722;rank=3 scaffold_58 . exon 157571 157930 . - . ID=Physo157722.3;Parent=Physo157722;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 158348 158394 . - 0 ID=Physo157722;Parent=Physo157722;rank=2 scaffold_58 . exon 158348 158394 . - . ID=Physo157722.2;Parent=Physo157722;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 158440 158594 . - 0 ID=Physo157722;Parent=Physo157722;rank=1 scaffold_58 . exon 158440 158594 . - . ID=Physo157722.1;Parent=Physo157722;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . repeat_region 161413 161478 . ? . description=dust scaffold_58 . repeat_region 161413 161478 . ? . description=trf scaffold_58 . repeat_region 161413 161565 . + . description=(CTG)n scaffold_58 . repeat_region 161606 161641 . ? . description=dust scaffold_58 . repeat_region 161607 161641 . ? . description=trf scaffold_58 . repeat_region 161608 161645 . ? . description=trf scaffold_58 ensembl protein_coding_gene 160127 160763 . - . ID=Physo137861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580034;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 160127 160763 . - . ID=Physo137861;Parent=Physo137861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 160127 160169 . - 0 ID=Physo137861;Parent=Physo137861;rank=2 scaffold_58 . exon 160127 160169 . - . ID=Physo137861.2;Parent=Physo137861;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 160360 160763 . - 0 ID=Physo137861;Parent=Physo137861;rank=1 scaffold_58 . exon 160360 160763 . - . ID=Physo137861.1;Parent=Physo137861;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 161204 163339 . + . ID=Physo137862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580035;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 161204 163339 . + . ID=Physo137862;Parent=Physo137862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 161204 161597 . + 0 ID=Physo137862;Parent=Physo137862;rank=1 scaffold_58 . exon 161204 161597 . + . ID=Physo137862.1;Parent=Physo137862;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 161657 161810 . + 0 ID=Physo137862;Parent=Physo137862;rank=2 scaffold_58 . exon 161657 161810 . + . ID=Physo137862.2;Parent=Physo137862;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_58 . CDS 162068 162168 . + 0 ID=Physo137862;Parent=Physo137862;rank=3 scaffold_58 . exon 162068 162168 . + . ID=Physo137862.3;Parent=Physo137862;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 162312 163339 . + 0 ID=Physo137862;Parent=Physo137862;rank=4 scaffold_58 . exon 162312 163339 . + . ID=Physo137862.4;Parent=Physo137862;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 ensembl protein_coding_gene 164250 166291 . + . ID=Physo137863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580036;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 164250 166291 . + . ID=Physo137863;Parent=Physo137863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 164250 165434 . + 0 ID=Physo137863;Parent=Physo137863;rank=1 scaffold_58 . exon 164250 165434 . + . ID=Physo137863.1;Parent=Physo137863;constitutive=1;rank=1 scaffold_58 . CDS 165540 165747 . + 0 ID=Physo137863;Parent=Physo137863;rank=2 scaffold_58 . exon 165540 165747 . + . ID=Physo137863.2;Parent=Physo137863;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 165821 166005 . + 0 ID=Physo137863;Parent=Physo137863;rank=3 scaffold_58 . exon 165821 166005 . + . ID=Physo137863.3;Parent=Physo137863;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 166088 166195 . + 0 ID=Physo137863;Parent=Physo137863;rank=4 scaffold_58 . exon 166088 166195 . + . ID=Physo137863.4;Parent=Physo137863;constitutive=1;rank=4 scaffold_58 . CDS 166254 166289 . + 0 ID=Physo137863;Parent=Physo137863;rank=5 scaffold_58 . exon 166254 166291 . + . ID=Physo137863.5;Parent=Physo137863;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_58 ensembl protein_coding_gene 166464 176214 . - . ID=Physo157725;biotype=protein_coding;external_name=C_scaffold_58000019;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 166464 176214 . - . ID=Physo157725;Parent=Physo157725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 166464 166481 . - 0 ID=Physo157725;Parent=Physo157725;rank=21 scaffold_58 . exon 166464 166481 . - . ID=Physo157725.21;Parent=Physo157725;constitutive=1;rank=21 scaffold_58 . CDS 166553 166683 . - 0 ID=Physo157725;Parent=Physo157725;rank=20 scaffold_58 . exon 166553 166683 . - . ID=Physo157725.20;Parent=Physo157725;constitutive=1;ensembl_phase=1;rank=20 scaffold_58 . CDS 167097 167220 . - 0 ID=Physo157725;Parent=Physo157725;rank=19 scaffold_58 . exon 167097 167220 . - . ID=Physo157725.19;Parent=Physo157725;constitutive=1;ensembl_end_phase=1;rank=19 scaffold_58 . CDS 167797 168068 . - 0 ID=Physo157725;Parent=Physo157725;rank=18 scaffold_58 . exon 167797 168068 . - . ID=Physo157725.18;Parent=Physo157725;constitutive=1;ensembl_phase=1;rank=18 scaffold_58 . CDS 168411 168753 . - 0 ID=Physo157725;Parent=Physo157725;rank=17 scaffold_58 . CDS 168955 170002 . - 0 ID=Physo157725;Parent=Physo157725;rank=16 scaffold_58 . CDS 170193 170854 . - 0 ID=Physo157725;Parent=Physo157725;rank=15 scaffold_58 . CDS 170933 171819 . - 0 ID=Physo157725;Parent=Physo157725;rank=14 scaffold_58 . CDS 171856 172103 . - 0 ID=Physo157725;Parent=Physo157725;rank=13 scaffold_58 . CDS 172239 172435 . - 0 ID=Physo157725;Parent=Physo157725;rank=12 scaffold_58 . CDS 172508 172886 . - 0 ID=Physo157725;Parent=Physo157725;rank=11 scaffold_58 . CDS 172935 173286 . - 0 ID=Physo157725;Parent=Physo157725;rank=10 scaffold_58 . CDS 173485 173556 . - 0 ID=Physo157725;Parent=Physo157725;rank=9 scaffold_58 . CDS 173602 174183 . - 0 ID=Physo157725;Parent=Physo157725;rank=8 scaffold_58 . CDS 174211 174523 . - 0 ID=Physo157725;Parent=Physo157725;rank=7 scaffold_58 . CDS 174551 174626 . - 0 ID=Physo157725;Parent=Physo157725;rank=6 scaffold_58 . CDS 174717 174976 . - 0 ID=Physo157725;Parent=Physo157725;rank=5 scaffold_58 . CDS 175214 175259 . - 0 ID=Physo157725;Parent=Physo157725;rank=4 scaffold_58 . CDS 175341 175469 . - 0 ID=Physo157725;Parent=Physo157725;rank=3 scaffold_58 . CDS 175641 175836 . - 0 ID=Physo157725;Parent=Physo157725;rank=2 scaffold_58 . CDS 176127 176214 . - 0 ID=Physo157725;Parent=Physo157725;rank=1 scaffold_58 . biological_region 169692 169695 0.999 + . logic_name=eponine scaffold_58 . biological_region 169926 169929 0.999 + . logic_name=eponine scaffold_58 . biological_region 169943 169948 0.999 + . logic_name=eponine scaffold_58 . biological_region 170338 170339 0.999 + . logic_name=eponine scaffold_58 . biological_region 170361 170362 0.999 + . logic_name=eponine scaffold_58 . exon 168411 168753 . - . ID=Physo157725.17;Parent=Physo157725;constitutive=1;ensembl_end_phase=1;rank=17 scaffold_58 . exon 168955 170002 . - . ID=Physo157725.16;Parent=Physo157725;constitutive=1;ensembl_phase=2;rank=16 scaffold_58 . exon 170193 170854 . - . ID=Physo157725.15;Parent=Physo157725;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_58 . exon 170933 171819 . - . ID=Physo157725.14;Parent=Physo157725;constitutive=1;ensembl_phase=1;rank=14 scaffold_58 . exon 171856 172103 . - . ID=Physo157725.13;Parent=Physo157725;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_58 . exon 172239 172435 . - . ID=Physo157725.12;Parent=Physo157725;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_58 . exon 172508 172886 . - . ID=Physo157725.11;Parent=Physo157725;constitutive=1;ensembl_phase=2;rank=11 scaffold_58 . exon 172935 173286 . - . ID=Physo157725.10;Parent=Physo157725;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_58 . exon 173485 173556 . - . ID=Physo157725.9;Parent=Physo157725;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_58 . exon 173602 174183 . - . ID=Physo157725.8;Parent=Physo157725;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_58 . exon 174211 174523 . - . ID=Physo157725.7;Parent=Physo157725;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_58 . exon 174551 174626 . - . ID=Physo157725.6;Parent=Physo157725;constitutive=1;ensembl_phase=2;rank=6 scaffold_58 . exon 174717 174976 . - . ID=Physo157725.5;Parent=Physo157725;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_58 . exon 175214 175259 . - . ID=Physo157725.4;Parent=Physo157725;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . exon 175341 175469 . - . ID=Physo157725.3;Parent=Physo157725;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_58 . exon 175641 175836 . - . ID=Physo157725.2;Parent=Physo157725;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_58 . exon 176127 176214 . - . ID=Physo157725.1;Parent=Physo157725;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . repeat_region 183463 183514 . ? . description=dust scaffold_58 . repeat_region 183464 183516 . + . description=(CAT)n scaffold_58 . repeat_region 183491 183513 . ? . description=trf scaffold_58 . repeat_region 184223 184270 . ? . description=trf scaffold_58 . repeat_region 184223 184277 . ? . description=dust scaffold_58 . repeat_region 184231 184276 . ? . description=trf scaffold_58 . repeat_region 184232 184276 . ? . description=trf scaffold_58 . repeat_region 185484 185491 . ? . description=dust scaffold_58 ensembl protein_coding_gene 182993 184716 . - . ID=Physo137865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580038;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 182993 184716 . - . ID=Physo137865;Parent=Physo137865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 182993 183034 . - 0 ID=Physo137865;Parent=Physo137865;rank=2 scaffold_58 . exon 182993 183034 . - . ID=Physo137865.2;Parent=Physo137865;constitutive=1;rank=2 scaffold_58 . CDS 183139 184716 . - 0 ID=Physo137865;Parent=Physo137865;rank=1 scaffold_58 . exon 183139 184716 . - . ID=Physo137865.1;Parent=Physo137865;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 184918 185583 . + . ID=Physo137866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580039;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 184918 185583 . + . ID=Physo137866;Parent=Physo137866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 184918 185157 . + 0 ID=Physo137866;Parent=Physo137866;rank=1 scaffold_58 . exon 184918 185157 . + . ID=Physo137866.1;Parent=Physo137866;constitutive=1;rank=1 scaffold_58 . CDS 185236 185425 . + 0 ID=Physo137866;Parent=Physo137866;rank=2 scaffold_58 . exon 185236 185425 . + . ID=Physo137866.2;Parent=Physo137866;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 185521 185564 . + 0 ID=Physo137866;Parent=Physo137866;rank=3 scaffold_58 . exon 185521 185583 . + . ID=Physo137866.3;Parent=Physo137866;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_58 ensembl protein_coding_gene 185595 186692 . - . ID=Physo137867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580040;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 185595 186692 . - . ID=Physo137867;Parent=Physo137867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 185595 185653 . - 0 ID=Physo137867;Parent=Physo137867;rank=3 scaffold_58 . exon 185595 185653 . - . ID=Physo137867.3;Parent=Physo137867;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 185951 186502 . - 0 ID=Physo137867;Parent=Physo137867;rank=2 scaffold_58 . exon 185951 186502 . - . ID=Physo137867.2;Parent=Physo137867;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 186647 186692 . - 0 ID=Physo137867;Parent=Physo137867;rank=1 scaffold_58 . exon 186647 186692 . - . ID=Physo137867.1;Parent=Physo137867;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 ensembl protein_coding_gene 188113 189267 . - . ID=Physo137868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580041;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 188113 189267 . - . ID=Physo137868;Parent=Physo137868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 188113 189267 . - 0 ID=Physo137868;Parent=Physo137868;rank=1 scaffold_58 . exon 188113 189267 . - . ID=Physo137868.1;Parent=Physo137868;constitutive=1;rank=1 scaffold_58 . biological_region 191648 191652 0.999 - . logic_name=eponine scaffold_58 . biological_region 191664 191666 0.999 - . logic_name=eponine scaffold_58 . biological_region 191674 191676 0.999 - . logic_name=eponine scaffold_58 . biological_region 191821 191823 0.999 + . logic_name=eponine scaffold_58 . biological_region 192471 192471 0.999 + . logic_name=eponine scaffold_58 . biological_region 193213 193213 0.999 - . logic_name=eponine scaffold_58 . biological_region 193940 193942 0.999 + . logic_name=eponine scaffold_58 . biological_region 194079 194083 0.999 + . logic_name=eponine scaffold_58 . biological_region 197098 197100 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 192522 193992 . + . ID=Physo109077;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580002;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 192522 193992 . + . ID=Physo109077;Parent=Physo109077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 192522 193862 . + 0 ID=Physo109077;Parent=Physo109077;rank=1 scaffold_58 . exon 192522 193992 . + . ID=Physo109077.1;Parent=Physo109077;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 189582 191733 . - . ID=Physo137869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580042;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 189582 191733 . - . ID=Physo137869;Parent=Physo137869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 189582 189766 . - 0 ID=Physo137869;Parent=Physo137869;rank=4 scaffold_58 . exon 189582 189766 . - . ID=Physo137869.4;Parent=Physo137869;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 189837 190829 . - 0 ID=Physo137869;Parent=Physo137869;rank=3 scaffold_58 . exon 189837 190829 . - . ID=Physo137869.3;Parent=Physo137869;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 190900 191167 . - 0 ID=Physo137869;Parent=Physo137869;rank=2 scaffold_58 . exon 190900 191167 . - . ID=Physo137869.2;Parent=Physo137869;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 191245 191670 . - 0 ID=Physo137869;Parent=Physo137869;rank=1 scaffold_58 . exon 191245 191733 . - . ID=Physo137869.1;Parent=Physo137869;constitutive=1;ensembl_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 193977 194819 . - . ID=Physo137871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580044;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 193977 194819 . - . ID=Physo137871;Parent=Physo137871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 193977 194819 . - 0 ID=Physo137871;Parent=Physo137871;rank=1 scaffold_58 . exon 193977 194819 . - . ID=Physo137871.1;Parent=Physo137871;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 195376 198513 . + . ID=Physo137872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580045;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 195376 198513 . + . ID=Physo137872;Parent=Physo137872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 195376 197289 . + 0 ID=Physo137872;Parent=Physo137872;rank=1 scaffold_58 . exon 195376 197289 . + . ID=Physo137872.1;Parent=Physo137872;constitutive=1;rank=1 scaffold_58 . CDS 197482 198513 . + 0 ID=Physo137872;Parent=Physo137872;rank=2 scaffold_58 . exon 197482 198513 . + . ID=Physo137872.2;Parent=Physo137872;constitutive=1;rank=2 scaffold_58 . repeat_region 200465 200520 . ? . description=trf scaffold_58 . repeat_region 202541 202548 . ? . description=dust scaffold_58 ensembl protein_coding_gene 198776 200084 . - . ID=Physo137873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580046;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 198776 200084 . - . ID=Physo137873;Parent=Physo137873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 198776 198811 . - 0 ID=Physo137873;Parent=Physo137873;rank=6 scaffold_58 . exon 198776 198811 . - . ID=Physo137873.6;Parent=Physo137873;constitutive=1;rank=6 scaffold_58 . CDS 198931 199407 . - 0 ID=Physo137873;Parent=Physo137873;rank=5 scaffold_58 . exon 198931 199407 . - . ID=Physo137873.5;Parent=Physo137873;constitutive=1;rank=5 scaffold_58 . CDS 199505 199586 . - 0 ID=Physo137873;Parent=Physo137873;rank=4 scaffold_58 . exon 199505 199586 . - . ID=Physo137873.4;Parent=Physo137873;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 199655 199695 . - 0 ID=Physo137873;Parent=Physo137873;rank=3 scaffold_58 . exon 199655 199695 . - . ID=Physo137873.3;Parent=Physo137873;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_58 . CDS 199764 199894 . - 0 ID=Physo137873;Parent=Physo137873;rank=2 scaffold_58 . exon 199764 199894 . - . ID=Physo137873.2;Parent=Physo137873;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 199967 200084 . - 0 ID=Physo137873;Parent=Physo137873;rank=1 scaffold_58 . exon 199967 200084 . - . ID=Physo137873.1;Parent=Physo137873;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 ensembl protein_coding_gene 200448 200864 . + . ID=Physo137874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580047;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 200448 200864 . + . ID=Physo137874;Parent=Physo137874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 200448 200864 . + 0 ID=Physo137874;Parent=Physo137874;rank=1 scaffold_58 . exon 200448 200864 . + . ID=Physo137874.1;Parent=Physo137874;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 201029 202266 . - . ID=Physo137875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580048;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 201029 202266 . - . ID=Physo137875;Parent=Physo137875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 201029 201456 . - 0 ID=Physo137875;Parent=Physo137875;rank=4 scaffold_58 . exon 201029 201456 . - . ID=Physo137875.4;Parent=Physo137875;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 201528 201669 . - 0 ID=Physo137875;Parent=Physo137875;rank=3 scaffold_58 . exon 201528 201669 . - . ID=Physo137875.3;Parent=Physo137875;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_58 . CDS 201748 202078 . - 0 ID=Physo137875;Parent=Physo137875;rank=2 scaffold_58 . exon 201748 202078 . - . ID=Physo137875.2;Parent=Physo137875;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 202208 202266 . - 0 ID=Physo137875;Parent=Physo137875;rank=1 scaffold_58 . exon 202208 202266 . - . ID=Physo137875.1;Parent=Physo137875;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 205400 208877 . - . ID=Physo137876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580049;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 205400 208877 . - . ID=Physo137876;Parent=Physo137876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 205400 205465 . - 0 ID=Physo137876;Parent=Physo137876;rank=8 scaffold_58 . exon 205400 205465 . - . ID=Physo137876.8;Parent=Physo137876;constitutive=1;rank=8 scaffold_58 . CDS 205623 205689 . - 0 ID=Physo137876;Parent=Physo137876;rank=7 scaffold_58 . exon 205623 205689 . - . ID=Physo137876.7;Parent=Physo137876;constitutive=1;ensembl_phase=2;rank=7 scaffold_58 . CDS 205832 206255 . - 0 ID=Physo137876;Parent=Physo137876;rank=6 scaffold_58 . exon 205832 206255 . - . ID=Physo137876.6;Parent=Physo137876;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_58 . CDS 206354 206750 . - 0 ID=Physo137876;Parent=Physo137876;rank=5 scaffold_58 . exon 206354 206750 . - . ID=Physo137876.5;Parent=Physo137876;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_58 . CDS 206894 207218 . - 0 ID=Physo137876;Parent=Physo137876;rank=4 scaffold_58 . exon 206894 207218 . - . ID=Physo137876.4;Parent=Physo137876;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 207270 208417 . - 0 ID=Physo137876;Parent=Physo137876;rank=3 scaffold_58 . exon 207270 208417 . - . ID=Physo137876.3;Parent=Physo137876;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_58 . CDS 208518 208586 . - 0 ID=Physo137876;Parent=Physo137876;rank=2 scaffold_58 . CDS 208815 208877 . - 0 ID=Physo137876;Parent=Physo137876;rank=1 scaffold_58 . biological_region 209293 209303 0.999 + . logic_name=eponine scaffold_58 . biological_region 209356 209363 0.999 + . logic_name=eponine scaffold_58 . biological_region 212769 212770 0.999 - . logic_name=eponine scaffold_58 . biological_region 213403 213408 0.999 - . logic_name=eponine scaffold_58 . biological_region 216664 216671 0.999 - . logic_name=eponine scaffold_58 . biological_region 216701 216703 0.999 - . logic_name=eponine scaffold_58 . biological_region 216744 216744 0.999 + . logic_name=eponine scaffold_58 . exon 208518 208586 . - . ID=Physo137876.2;Parent=Physo137876;constitutive=1;rank=2 scaffold_58 . exon 208815 208877 . - . ID=Physo137876.1;Parent=Physo137876;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 209348 212586 . + . ID=Physo137877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580050;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 209348 212586 . + . ID=Physo137877;Parent=Physo137877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 209348 209556 . + . ID=Physo137877.1;Parent=Physo137877;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 209358 209556 . + 0 ID=Physo137877;Parent=Physo137877;rank=1 scaffold_58 . CDS 209639 209848 . + 0 ID=Physo137877;Parent=Physo137877;rank=2 scaffold_58 . exon 209639 209848 . + . ID=Physo137877.2;Parent=Physo137877;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 209916 210020 . + 0 ID=Physo137877;Parent=Physo137877;rank=3 scaffold_58 . exon 209916 210020 . + . ID=Physo137877.3;Parent=Physo137877;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 210114 210271 . + 0 ID=Physo137877;Parent=Physo137877;rank=4 scaffold_58 . exon 210114 210271 . + . ID=Physo137877.4;Parent=Physo137877;constitutive=1;ensembl_phase=1;rank=4 scaffold_58 . CDS 210660 210817 . + 0 ID=Physo137877;Parent=Physo137877;rank=5 scaffold_58 . exon 210660 210817 . + . ID=Physo137877.5;Parent=Physo137877;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_58 . CDS 210898 211067 . + 0 ID=Physo137877;Parent=Physo137877;rank=6 scaffold_58 . exon 210898 211067 . + . ID=Physo137877.6;Parent=Physo137877;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_58 . CDS 211153 211352 . + 0 ID=Physo137877;Parent=Physo137877;rank=7 scaffold_58 . exon 211153 211352 . + . ID=Physo137877.7;Parent=Physo137877;constitutive=1;ensembl_phase=1;rank=7 scaffold_58 . CDS 211441 211943 . + 0 ID=Physo137877;Parent=Physo137877;rank=8 scaffold_58 . exon 211441 211943 . + . ID=Physo137877.8;Parent=Physo137877;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_58 . CDS 212013 212196 . + 0 ID=Physo137877;Parent=Physo137877;rank=9 scaffold_58 . exon 212013 212481 . + . ID=Physo137877.9;Parent=Physo137877;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=9 scaffold_58 . exon 212571 212586 . + . ID=Physo137877.10;Parent=Physo137877;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=10 scaffold_58 ensembl protein_coding_gene 216561 217376 . + . ID=Physo137879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580052;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 216561 217376 . + . ID=Physo137879;Parent=Physo137879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 216561 217376 . + . ID=Physo137879.1;Parent=Physo137879;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 216585 217283 . + 0 ID=Physo137879;Parent=Physo137879;rank=1 scaffold_58 ensembl protein_coding_gene 217441 218760 . - . ID=Physo137880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580053;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 217441 218760 . - . ID=Physo137880;Parent=Physo137880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 217441 218760 . - 0 ID=Physo137880;Parent=Physo137880;rank=1 scaffold_58 . exon 217441 218760 . - . ID=Physo137880.1;Parent=Physo137880;constitutive=1;rank=1 scaffold_58 . repeat_region 225670 225723 . ? . description=trf scaffold_58 . repeat_region 225723 225824 . ? . description=trf scaffold_58 . repeat_region 225874 225925 . ? . description=trf scaffold_58 ensembl protein_coding_gene 219201 221753 . + . ID=Physo137881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580054;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 219201 221753 . + . ID=Physo137881;Parent=Physo137881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 219201 221753 . + 0 ID=Physo137881;Parent=Physo137881;rank=1 scaffold_58 . exon 219201 221753 . + . ID=Physo137881.1;Parent=Physo137881;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 226474 230190 . - . ID=Physo137883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580056;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 226474 230190 . - . ID=Physo137883;Parent=Physo137883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 226474 230190 . - 0 ID=Physo137883;Parent=Physo137883;rank=1 scaffold_58 . exon 226474 230190 . - . ID=Physo137883.1;Parent=Physo137883;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 221982 225947 . - . ID=Physo157728;biotype=protein_coding;external_name=C_scaffold_58000022;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 221982 225947 . - . ID=Physo157728;Parent=Physo157728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 221982 224810 . - 0 ID=Physo157728;Parent=Physo157728;rank=3 scaffold_58 . exon 221982 224810 . - . ID=Physo157728.3;Parent=Physo157728;constitutive=1;rank=3 scaffold_58 . CDS 224831 225483 . - 0 ID=Physo157728;Parent=Physo157728;rank=2 scaffold_58 . exon 224831 225483 . - . ID=Physo157728.2;Parent=Physo157728;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 225506 225947 . - 0 ID=Physo157728;Parent=Physo157728;rank=1 scaffold_58 . exon 225506 225947 . - . ID=Physo157728.1;Parent=Physo157728;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . biological_region 228219 228224 0.999 - . logic_name=eponine scaffold_58 . biological_region 228276 228281 0.999 + . logic_name=eponine scaffold_58 . biological_region 228663 228665 0.999 + . logic_name=eponine scaffold_58 . biological_region 228849 228851 0.999 - . logic_name=eponine scaffold_58 . biological_region 237000 237007 0.999 + . logic_name=eponine scaffold_58 . biological_region 237059 237061 0.999 - . logic_name=eponine scaffold_58 . biological_region 237492 237498 0.999 - . logic_name=eponine scaffold_58 . biological_region 237500 237502 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 233521 239819 . - . ID=Physo137884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580057;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 233521 239819 . - . ID=Physo137884;Parent=Physo137884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 233521 234186 . - 0 ID=Physo137884;Parent=Physo137884;rank=10 scaffold_58 . exon 233521 234186 . - . ID=Physo137884.10;Parent=Physo137884;constitutive=1;rank=10 scaffold_58 . CDS 234215 234288 . - 0 ID=Physo137884;Parent=Physo137884;rank=9 scaffold_58 . exon 234215 234288 . - . ID=Physo137884.9;Parent=Physo137884;constitutive=1;ensembl_phase=1;rank=9 scaffold_58 . CDS 234399 234566 . - 0 ID=Physo137884;Parent=Physo137884;rank=8 scaffold_58 . exon 234399 234566 . - . ID=Physo137884.8;Parent=Physo137884;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_58 . CDS 234729 235065 . - 0 ID=Physo137884;Parent=Physo137884;rank=7 scaffold_58 . exon 234729 235065 . - . ID=Physo137884.7;Parent=Physo137884;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_58 . CDS 235174 235414 . - 0 ID=Physo137884;Parent=Physo137884;rank=6 scaffold_58 . exon 235174 235414 . - . ID=Physo137884.6;Parent=Physo137884;constitutive=1;ensembl_phase=2;rank=6 scaffold_58 . CDS 235497 236298 . - 0 ID=Physo137884;Parent=Physo137884;rank=5 scaffold_58 . exon 235497 236298 . - . ID=Physo137884.5;Parent=Physo137884;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_58 . CDS 236585 236663 . - 0 ID=Physo137884;Parent=Physo137884;rank=4 scaffold_58 . exon 236585 236663 . - . ID=Physo137884.4;Parent=Physo137884;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_58 . CDS 236901 238933 . - 0 ID=Physo137884;Parent=Physo137884;rank=3 scaffold_58 . exon 236901 238933 . - . ID=Physo137884.3;Parent=Physo137884;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 239216 239323 . - 0 ID=Physo137884;Parent=Physo137884;rank=2 scaffold_58 . CDS 239570 239819 . - 0 ID=Physo137884;Parent=Physo137884;rank=1 scaffold_58 . repeat_region 242295 242316 . ? . description=trf scaffold_58 . repeat_region 242295 242316 . ? . description=dust scaffold_58 . exon 239216 239323 . - . ID=Physo137884.2;Parent=Physo137884;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_58 . exon 239570 239819 . - . ID=Physo137884.1;Parent=Physo137884;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 ensembl protein_coding_gene 240485 242272 . + . ID=Physo137885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580058;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 240485 242272 . + . ID=Physo137885;Parent=Physo137885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 240485 242272 . + 0 ID=Physo137885;Parent=Physo137885;rank=1 scaffold_58 . exon 240485 242272 . + . ID=Physo137885.1;Parent=Physo137885;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 242573 244309 . + . ID=Physo137886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580059;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 242573 244309 . + . ID=Physo137886;Parent=Physo137886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 242573 244309 . + 0 ID=Physo137886;Parent=Physo137886;rank=1 scaffold_58 . exon 242573 244309 . + . ID=Physo137886.1;Parent=Physo137886;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 244539 246818 . - . ID=Physo137887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580060;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 244539 246818 . - . ID=Physo137887;Parent=Physo137887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 244539 246818 . - . ID=Physo137887.1;Parent=Physo137887;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_58 . CDS 244851 246818 . - 0 ID=Physo137887;Parent=Physo137887;rank=1 scaffold_58 ensembl protein_coding_gene 247112 247963 . + . ID=Physo137888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580061;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 247112 247963 . + . ID=Physo137888;Parent=Physo137888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 247112 247400 . + 0 ID=Physo137888;Parent=Physo137888;rank=1 scaffold_58 . exon 247112 247400 . + . ID=Physo137888.1;Parent=Physo137888;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 247464 247849 . + 0 ID=Physo137888;Parent=Physo137888;rank=2 scaffold_58 . exon 247464 247963 . + . ID=Physo137888.2;Parent=Physo137888;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_58 . biological_region 248350 248354 0.999 - . logic_name=eponine scaffold_58 . biological_region 249991 249997 0.999 + . logic_name=eponine scaffold_58 . biological_region 250018 250023 0.999 + . logic_name=eponine scaffold_58 . biological_region 254944 254948 0.999 + . logic_name=eponine scaffold_58 . biological_region 256935 256936 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 248066 249760 . - . ID=Physo109078;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580003;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 248066 249760 . - . ID=Physo109078;Parent=Physo109078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 248066 249760 . - 0 ID=Physo109078;Parent=Physo109078;rank=1 scaffold_58 . exon 248066 249760 . - . ID=Physo109078.1;Parent=Physo109078;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 250010 254049 . + . ID=Physo137890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580063;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 250010 254049 . + . ID=Physo137890;Parent=Physo137890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 250010 253793 . + 0 ID=Physo137890;Parent=Physo137890;rank=1 scaffold_58 . exon 250010 253793 . + . ID=Physo137890.1;Parent=Physo137890;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 253925 253939 . + 0 ID=Physo137890;Parent=Physo137890;rank=2 scaffold_58 . exon 253925 253939 . + . ID=Physo137890.2;Parent=Physo137890;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 254006 254049 . + 0 ID=Physo137890;Parent=Physo137890;rank=3 scaffold_58 . exon 254006 254049 . + . ID=Physo137890.3;Parent=Physo137890;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 ensembl protein_coding_gene 254374 257813 . - . ID=Physo137891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580064;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 254374 257813 . - . ID=Physo137891;Parent=Physo137891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 254374 254478 . - 0 ID=Physo137891;Parent=Physo137891;rank=4 scaffold_58 . exon 254374 254478 . - . ID=Physo137891.4;Parent=Physo137891;constitutive=1;rank=4 scaffold_58 . CDS 254559 254689 . - 0 ID=Physo137891;Parent=Physo137891;rank=3 scaffold_58 . exon 254559 254689 . - . ID=Physo137891.3;Parent=Physo137891;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 254772 257701 . - 0 ID=Physo137891;Parent=Physo137891;rank=2 scaffold_58 . exon 254772 257701 . - . ID=Physo137891.2;Parent=Physo137891;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 257785 257813 . - 0 ID=Physo137891;Parent=Physo137891;rank=1 scaffold_58 . repeat_region 265978 265987 . ? . description=dust scaffold_58 . exon 257785 257813 . - . ID=Physo137891.1;Parent=Physo137891;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 257981 260185 . + . ID=Physo137892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580065;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 257981 260185 . + . ID=Physo137892;Parent=Physo137892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 257981 260185 . + 0 ID=Physo137892;Parent=Physo137892;rank=1 scaffold_58 . exon 257981 260185 . + . ID=Physo137892.1;Parent=Physo137892;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 260295 262016 . - . ID=Physo137893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580066;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 260295 262016 . - . ID=Physo137893;Parent=Physo137893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 260295 260684 . - 0 ID=Physo137893;Parent=Physo137893;rank=5 scaffold_58 . exon 260295 260684 . - . ID=Physo137893.5;Parent=Physo137893;constitutive=1;rank=5 scaffold_58 . CDS 260730 261362 . - 0 ID=Physo137893;Parent=Physo137893;rank=4 scaffold_58 . exon 260730 261362 . - . ID=Physo137893.4;Parent=Physo137893;constitutive=1;rank=4 scaffold_58 . CDS 261394 261419 . - 0 ID=Physo137893;Parent=Physo137893;rank=3 scaffold_58 . exon 261394 261419 . - . ID=Physo137893.3;Parent=Physo137893;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 261493 261550 . - 0 ID=Physo137893;Parent=Physo137893;rank=2 scaffold_58 . exon 261493 261550 . - . ID=Physo137893.2;Parent=Physo137893;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 261984 262016 . - 0 ID=Physo137893;Parent=Physo137893;rank=1 scaffold_58 . exon 261984 262016 . - . ID=Physo137893.1;Parent=Physo137893;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 262243 263082 . + . ID=Physo137894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580067;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 262243 263082 . + . ID=Physo137894;Parent=Physo137894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 262243 263082 . + 0 ID=Physo137894;Parent=Physo137894;rank=1 scaffold_58 . exon 262243 263082 . + . ID=Physo137894.1;Parent=Physo137894;constitutive=1;rank=1 scaffold_58 . repeat_region 267974 268104 . ? . description=trf scaffold_58 . biological_region 268070 268074 0.999 + . logic_name=eponine scaffold_58 . repeat_region 268084 268160 . ? . description=trf scaffold_58 . biological_region 268160 268160 0.999 + . logic_name=eponine scaffold_58 . biological_region 275852 275856 0.999 + . logic_name=eponine scaffold_58 . biological_region 276006 276009 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 269459 270148 . + . ID=Physo137895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580068;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 269459 270148 . + . ID=Physo137895;Parent=Physo137895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 269459 270148 . + 0 ID=Physo137895;Parent=Physo137895;rank=1 scaffold_58 . exon 269459 270148 . + . ID=Physo137895.1;Parent=Physo137895;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 275824 276651 . - . ID=Physo137896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580069;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 275824 276651 . - . ID=Physo137896;Parent=Physo137896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 275824 276651 . - 0 ID=Physo137896;Parent=Physo137896;rank=1 scaffold_58 . exon 275824 276651 . - . ID=Physo137896.1;Parent=Physo137896;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 284462 286092 . + . ID=Physo109079;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580004;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 284462 286092 . + . ID=Physo109079;Parent=Physo109079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 284462 285857 . + 0 ID=Physo109079;Parent=Physo109079;rank=1 scaffold_58 . exon 284462 285857 . + . ID=Physo109079.1;Parent=Physo109079;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 285959 286092 . + 0 ID=Physo109079;Parent=Physo109079;rank=2 scaffold_58 . exon 285959 286092 . + . ID=Physo109079.2;Parent=Physo109079;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 ensembl protein_coding_gene 286486 287498 . - . ID=Physo109080;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580005;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 286486 287498 . - . ID=Physo109080;Parent=Physo109080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 286486 287445 . - 0 ID=Physo109080;Parent=Physo109080;rank=1 scaffold_58 . exon 286486 287498 . - . ID=Physo109080.1;Parent=Physo109080;constitutive=1;ensembl_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 278023 280652 . + . ID=Physo137897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580070;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 278023 280652 . + . ID=Physo137897;Parent=Physo137897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 278023 278813 . + 0 ID=Physo137897;Parent=Physo137897;rank=1 scaffold_58 . exon 278023 278813 . + . ID=Physo137897.1;Parent=Physo137897;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 278913 279021 . + 0 ID=Physo137897;Parent=Physo137897;rank=2 scaffold_58 . exon 278913 279021 . + . ID=Physo137897.2;Parent=Physo137897;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 279129 280652 . + 0 ID=Physo137897;Parent=Physo137897;rank=3 scaffold_58 . exon 279129 280652 . + . ID=Physo137897.3;Parent=Physo137897;constitutive=1;rank=3 scaffold_58 ensembl protein_coding_gene 280769 282829 . - . ID=Physo137898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580071;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 280769 282829 . - . ID=Physo137898;Parent=Physo137898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 280769 282457 . - 0 ID=Physo137898;Parent=Physo137898;rank=3 scaffold_58 . exon 280769 282457 . - . ID=Physo137898.3;Parent=Physo137898;constitutive=1;rank=3 scaffold_58 . CDS 282527 282734 . - 0 ID=Physo137898;Parent=Physo137898;rank=2 scaffold_58 . exon 282527 282734 . - . ID=Physo137898.2;Parent=Physo137898;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 282801 282820 . - 0 ID=Physo137898;Parent=Physo137898;rank=1 scaffold_58 . exon 282801 282829 . - . ID=Physo137898.1;Parent=Physo137898;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 283161 284278 . - . ID=Physo137899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580072;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 283161 284278 . - . ID=Physo137899;Parent=Physo137899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 283161 283493 . - 0 ID=Physo137899;Parent=Physo137899;rank=3 scaffold_58 . exon 283161 283493 . - . ID=Physo137899.3;Parent=Physo137899;constitutive=1;rank=3 scaffold_58 . CDS 283598 283711 . - 0 ID=Physo137899;Parent=Physo137899;rank=2 scaffold_58 . exon 283598 283711 . - . ID=Physo137899.2;Parent=Physo137899;constitutive=1;rank=2 scaffold_58 . CDS 283787 284275 . - 0 ID=Physo137899;Parent=Physo137899;rank=1 scaffold_58 . exon 283787 284278 . - . ID=Physo137899.1;Parent=Physo137899;constitutive=1;ensembl_phase=-1;rank=1 scaffold_58 . repeat_region 289480 289495 . ? . description=dust scaffold_58 . biological_region 289686 289686 0.999 - . logic_name=eponine scaffold_58 . biological_region 292451 292453 0.999 + . logic_name=eponine scaffold_58 . biological_region 293358 293365 0.999 + . logic_name=eponine scaffold_58 . biological_region 293407 293407 0.999 - . logic_name=eponine scaffold_58 . biological_region 293421 293426 0.999 - . logic_name=eponine scaffold_58 . biological_region 293830 293837 0.999 + . logic_name=eponine scaffold_58 . repeat_region 293893 293929 . ? . description=trf scaffold_58 . biological_region 293941 293946 0.999 - . logic_name=eponine scaffold_58 . biological_region 293971 293974 0.999 + . logic_name=eponine scaffold_58 . biological_region 293997 294002 0.999 + . logic_name=eponine scaffold_58 . biological_region 293997 294003 0.999 - . logic_name=eponine scaffold_58 . repeat_region 295556 295582 . ? . description=trf scaffold_58 . repeat_region 295556 295605 . ? . description=dust scaffold_58 . biological_region 295839 295847 0.999 + . logic_name=eponine scaffold_58 . biological_region 295940 295942 0.999 + . logic_name=eponine scaffold_58 . repeat_region 296528 296538 . ? . description=dust scaffold_58 . biological_region 296911 296912 0.999 + . logic_name=eponine scaffold_58 . biological_region 297143 297147 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 294344 295959 . - . ID=Physo137904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580077;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 294344 295959 . - . ID=Physo137904;Parent=Physo137904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 294344 294772 . - . ID=Physo137904.5;Parent=Physo137904;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_58 . CDS 294442 294772 . - 0 ID=Physo137904;Parent=Physo137904;rank=5 scaffold_58 . CDS 294856 295164 . - 0 ID=Physo137904;Parent=Physo137904;rank=4 scaffold_58 . exon 294856 295164 . - . ID=Physo137904.4;Parent=Physo137904;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_58 . CDS 295246 295376 . - 0 ID=Physo137904;Parent=Physo137904;rank=3 scaffold_58 . exon 295246 295376 . - . ID=Physo137904.3;Parent=Physo137904;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_58 . CDS 295449 295608 . - 0 ID=Physo137904;Parent=Physo137904;rank=2 scaffold_58 . exon 295449 295608 . - . ID=Physo137904.2;Parent=Physo137904;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 295817 295959 . - 0 ID=Physo137904;Parent=Physo137904;rank=1 scaffold_58 . exon 295817 295959 . - . ID=Physo137904.1;Parent=Physo137904;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 ensembl protein_coding_gene 296971 298238 . + . ID=Physo137905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580078;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 296971 298238 . + . ID=Physo137905;Parent=Physo137905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 296971 297066 . + 0 ID=Physo137905;Parent=Physo137905;rank=1 scaffold_58 . exon 296971 297066 . + . ID=Physo137905.1;Parent=Physo137905;constitutive=1;rank=1 scaffold_58 . CDS 297240 297273 . + 0 ID=Physo137905;Parent=Physo137905;rank=2 scaffold_58 . CDS 297369 297456 . + 0 ID=Physo137905;Parent=Physo137905;rank=3 scaffold_58 . CDS 297607 297912 . + 0 ID=Physo137905;Parent=Physo137905;rank=4 scaffold_58 . CDS 297987 298062 . + 0 ID=Physo137905;Parent=Physo137905;rank=5 scaffold_58 ensembl protein_coding_gene 287850 291162 . + . ID=Physo157734;biotype=protein_coding;external_name=C_scaffold_58000028;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 287850 291162 . + . ID=Physo157734;Parent=Physo157734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 287850 288094 . + 0 ID=Physo157734;Parent=Physo157734;rank=1 scaffold_58 . exon 287850 288094 . + . ID=Physo157734.1;Parent=Physo157734;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 288170 288199 . + 0 ID=Physo157734;Parent=Physo157734;rank=2 scaffold_58 . exon 288170 288199 . + . ID=Physo157734.2;Parent=Physo157734;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_58 . CDS 288275 288341 . + 0 ID=Physo157734;Parent=Physo157734;rank=3 scaffold_58 . exon 288275 288341 . + . ID=Physo157734.3;Parent=Physo157734;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 288404 288490 . + 0 ID=Physo157734;Parent=Physo157734;rank=4 scaffold_58 . exon 288404 288490 . + . ID=Physo157734.4;Parent=Physo157734;constitutive=1;rank=4 scaffold_58 . CDS 288556 288624 . + 0 ID=Physo157734;Parent=Physo157734;rank=5 scaffold_58 . exon 288556 288624 . + . ID=Physo157734.5;Parent=Physo157734;constitutive=1;rank=5 scaffold_58 . CDS 288699 288796 . + 0 ID=Physo157734;Parent=Physo157734;rank=6 scaffold_58 . exon 288699 288796 . + . ID=Physo157734.6;Parent=Physo157734;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_58 . CDS 288884 288962 . + 0 ID=Physo157734;Parent=Physo157734;rank=7 scaffold_58 . exon 288884 288962 . + . ID=Physo157734.7;Parent=Physo157734;constitutive=1;ensembl_phase=2;rank=7 scaffold_58 . CDS 289032 289155 . + 0 ID=Physo157734;Parent=Physo157734;rank=8 scaffold_58 . exon 289032 289155 . + . ID=Physo157734.8;Parent=Physo157734;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_58 . CDS 289225 289318 . + 0 ID=Physo157734;Parent=Physo157734;rank=9 scaffold_58 . exon 289225 289318 . + . ID=Physo157734.9;Parent=Physo157734;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_58 . CDS 289710 290310 . + 0 ID=Physo157734;Parent=Physo157734;rank=10 scaffold_58 . exon 289710 290310 . + . ID=Physo157734.10;Parent=Physo157734;constitutive=1;ensembl_phase=2;rank=10 scaffold_58 . CDS 290521 290740 . + 0 ID=Physo157734;Parent=Physo157734;rank=11 scaffold_58 . exon 290521 290740 . + . ID=Physo157734.11;Parent=Physo157734;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_58 . CDS 290954 291162 . + 0 ID=Physo157734;Parent=Physo157734;rank=12 scaffold_58 . exon 290954 291162 . + . ID=Physo157734.12;Parent=Physo157734;constitutive=1;ensembl_phase=1;rank=12 scaffold_58 ensembl protein_coding_gene 291511 292802 . - . ID=Physo157736;biotype=protein_coding;external_name=C_scaffold_58000030;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 291511 292802 . - . ID=Physo157736;Parent=Physo157736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 291511 291525 . - 0 ID=Physo157736;Parent=Physo157736;rank=2 scaffold_58 . exon 291511 291525 . - . ID=Physo157736.2;Parent=Physo157736;constitutive=1;rank=2 scaffold_58 . CDS 291546 292802 . - 0 ID=Physo157736;Parent=Physo157736;rank=1 scaffold_58 . exon 291546 292802 . - . ID=Physo157736.1;Parent=Physo157736;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 300574 301577 . + . ID=Physo109081;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580006;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 300574 301577 . + . ID=Physo109081;Parent=Physo109081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 300574 301575 . + 0 ID=Physo109081;Parent=Physo109081;rank=1 scaffold_58 . exon 300574 301577 . + . ID=Physo109081.1;Parent=Physo109081;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_58 . exon 297240 297273 . + . ID=Physo137905.2;Parent=Physo137905;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . exon 297369 297456 . + . ID=Physo137905.3;Parent=Physo137905;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_58 . exon 297607 297912 . + . ID=Physo137905.4;Parent=Physo137905;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_58 . exon 297987 298238 . + . ID=Physo137905.5;Parent=Physo137905;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_58 ensembl protein_coding_gene 299442 300306 . - . ID=Physo137906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580079;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 299442 300306 . - . ID=Physo137906;Parent=Physo137906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 299442 299470 . - . ID=Physo137906.3;Parent=Physo137906;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_58 . CDS 299444 299470 . - 0 ID=Physo137906;Parent=Physo137906;rank=3 scaffold_58 . CDS 299545 300018 . - 0 ID=Physo137906;Parent=Physo137906;rank=2 scaffold_58 . exon 299545 300018 . - . ID=Physo137906.2;Parent=Physo137906;constitutive=1;rank=2 scaffold_58 . CDS 300088 300294 . - 0 ID=Physo137906;Parent=Physo137906;rank=1 scaffold_58 . exon 300088 300306 . - . ID=Physo137906.1;Parent=Physo137906;constitutive=1;ensembl_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 303343 304727 . - . ID=Physo137909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580082;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 303343 304727 . - . ID=Physo137909;Parent=Physo137909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 303343 304727 . - . ID=Physo137909.1;Parent=Physo137909;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 303406 304626 . - 0 ID=Physo137909;Parent=Physo137909;rank=1 scaffold_58 . repeat_region 307657 307774 . ? . description=trf scaffold_58 . repeat_region 310648 310662 . ? . description=dust scaffold_58 . biological_region 310954 310958 0.999 - . logic_name=eponine scaffold_58 . biological_region 310977 310983 0.999 - . logic_name=eponine scaffold_58 . repeat_region 311482 311524 . ? . description=dust scaffold_58 . repeat_region 311491 311524 . ? . description=trf scaffold_58 . biological_region 311876 311881 0.999 - . logic_name=eponine scaffold_58 . biological_region 311953 311956 0.999 + . logic_name=eponine scaffold_58 . biological_region 312251 312254 0.999 + . logic_name=eponine scaffold_58 . biological_region 312306 312311 0.999 - . logic_name=eponine scaffold_58 . repeat_region 313472 313501 . ? . description=trf scaffold_58 . repeat_region 313932 313965 . ? . description=trf scaffold_58 . biological_region 313932 313934 0.999 + . logic_name=eponine scaffold_58 . repeat_region 313963 313989 . ? . description=trf scaffold_58 . biological_region 314051 314054 0.999 + . logic_name=eponine scaffold_58 . biological_region 314077 314077 0.999 - . logic_name=eponine scaffold_58 . biological_region 314120 314122 0.999 - . logic_name=eponine scaffold_58 . biological_region 314183 314184 0.999 - . logic_name=eponine scaffold_58 . biological_region 314221 314224 0.999 - . logic_name=eponine scaffold_58 . repeat_region 314233 314350 . ? . description=trf scaffold_58 . repeat_region 314249 314355 . ? . description=trf scaffold_58 . repeat_region 314336 314491 . ? . description=trf scaffold_58 . repeat_region 314355 314481 . ? . description=trf scaffold_58 . repeat_region 315008 315022 . ? . description=dust scaffold_58 . repeat_region 315730 315878 . ? . description=trf scaffold_58 . repeat_region 315780 315879 . ? . description=trf scaffold_58 . repeat_region 315859 315965 . ? . description=trf scaffold_58 . repeat_region 315868 315981 . ? . description=trf scaffold_58 . biological_region 315991 315994 0.999 + . logic_name=eponine scaffold_58 . biological_region 316031 316032 0.999 + . logic_name=eponine scaffold_58 . biological_region 316093 316095 0.999 + . logic_name=eponine scaffold_58 . biological_region 316138 316138 0.999 + . logic_name=eponine scaffold_58 . biological_region 316161 316164 0.999 - . logic_name=eponine scaffold_58 . repeat_region 316225 316251 . ? . description=trf scaffold_58 . repeat_region 316249 316282 . ? . description=trf scaffold_58 . biological_region 316281 316283 0.999 - . logic_name=eponine scaffold_58 . repeat_region 316713 316742 . ? . description=trf scaffold_58 ensembl pseudogene 309617 310402 . + . ID=Physo109083;biotype=pseudogene;external_name=estExt_fgenesh1_pm.C_580008;logic_name=jgi_physo1_1 scaffold_58 ensembl pseudogene 309617 310402 . + . ID=Physo109083;Parent=Physo109083;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_58 . exon 309617 310402 . + . ID=Physo109083.1;Parent=Physo109083;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 311520 312592 . + . ID=Physo109084;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580009;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 311520 312592 . + . ID=Physo109084;Parent=Physo109084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 311520 312592 . + . ID=Physo109084.1;Parent=Physo109084;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 311524 312525 . + 0 ID=Physo109084;Parent=Physo109084;rank=1 scaffold_58 ensembl protein_coding_gene 313832 314782 . + . ID=Physo137913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580086;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 313832 314782 . + . ID=Physo137913;Parent=Physo137913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 313832 314782 . + 0 ID=Physo137913;Parent=Physo137913;rank=1 scaffold_58 . exon 313832 314782 . + . ID=Physo137913.1;Parent=Physo137913;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 315549 316382 . - . ID=Physo137914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580087;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 315549 316382 . - . ID=Physo137914;Parent=Physo137914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 315549 316382 . - 0 ID=Physo137914;Parent=Physo137914;rank=1 scaffold_58 . exon 315549 316382 . - . ID=Physo137914.1;Parent=Physo137914;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 317622 318694 . - . ID=Physo109085;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580010;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 317622 318694 . - . ID=Physo109085;Parent=Physo109085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 317622 318694 . - . ID=Physo109085.1;Parent=Physo109085;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 317689 318690 . - 0 ID=Physo109085;Parent=Physo109085;rank=1 scaffold_58 ensembl protein_coding_gene 319285 320364 . + . ID=Physo109086;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580011;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 319285 320364 . + . ID=Physo109086;Parent=Physo109086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 319285 320364 . + . ID=Physo109086.1;Parent=Physo109086;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 319289 320290 . + 0 ID=Physo109086;Parent=Physo109086;rank=1 scaffold_58 ensembl protein_coding_gene 321304 322398 . + . ID=Physo137917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580090;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 321304 322398 . + . ID=Physo137917;Parent=Physo137917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 321304 322398 . + . ID=Physo137917.1;Parent=Physo137917;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 321345 322346 . + 0 ID=Physo137917;Parent=Physo137917;rank=1 scaffold_58 ensembl protein_coding_gene 324126 326804 . + . ID=Physo137918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580091;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 324126 326804 . + . ID=Physo137918;Parent=Physo137918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 324126 324325 . + 0 ID=Physo137918;Parent=Physo137918;rank=1 scaffold_58 . exon 324126 324325 . + . ID=Physo137918.1;Parent=Physo137918;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 324412 324475 . + 0 ID=Physo137918;Parent=Physo137918;rank=2 scaffold_58 . exon 324412 324475 . + . ID=Physo137918.2;Parent=Physo137918;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 324549 324598 . + 0 ID=Physo137918;Parent=Physo137918;rank=3 scaffold_58 . exon 324549 324598 . + . ID=Physo137918.3;Parent=Physo137918;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_58 . CDS 324717 324917 . + 0 ID=Physo137918;Parent=Physo137918;rank=4 scaffold_58 . exon 324717 324917 . + . ID=Physo137918.4;Parent=Physo137918;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_58 . CDS 325074 325190 . + 0 ID=Physo137918;Parent=Physo137918;rank=5 scaffold_58 . exon 325074 325190 . + . ID=Physo137918.5;Parent=Physo137918;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_58 . CDS 325284 325680 . + 0 ID=Physo137918;Parent=Physo137918;rank=6 scaffold_58 . exon 325284 325680 . + . ID=Physo137918.6;Parent=Physo137918;constitutive=1;ensembl_phase=2;rank=6 scaffold_58 . CDS 325751 326356 . + 0 ID=Physo137918;Parent=Physo137918;rank=7 scaffold_58 . exon 325751 326356 . + . ID=Physo137918.7;Parent=Physo137918;constitutive=1;rank=7 scaffold_58 . CDS 326667 326804 . + 0 ID=Physo137918;Parent=Physo137918;rank=8 scaffold_58 . exon 326667 326804 . + . ID=Physo137918.8;Parent=Physo137918;constitutive=1;rank=8 scaffold_58 . biological_region 330153 330156 0.999 - . logic_name=eponine scaffold_58 . biological_region 330337 330342 0.999 + . logic_name=eponine scaffold_58 . biological_region 330352 330355 0.999 + . logic_name=eponine scaffold_58 . biological_region 330373 330374 0.999 + . logic_name=eponine scaffold_58 . biological_region 330395 330399 0.999 + . logic_name=eponine scaffold_58 . biological_region 330421 330425 0.999 - . logic_name=eponine scaffold_58 . biological_region 330428 330432 0.999 - . logic_name=eponine scaffold_58 . biological_region 330532 330536 0.999 - . logic_name=eponine scaffold_58 . biological_region 330616 330617 0.999 + . logic_name=eponine scaffold_58 . biological_region 330878 330880 0.999 - . logic_name=eponine scaffold_58 . biological_region 332682 332684 0.999 + . logic_name=eponine scaffold_58 . biological_region 332861 332866 0.999 + . logic_name=eponine scaffold_58 . biological_region 333917 333918 0.999 - . logic_name=eponine scaffold_58 . biological_region 335881 335882 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 327032 330505 . - . ID=Physo137919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580092;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 327032 330505 . - . ID=Physo137919;Parent=Physo137919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 327032 330505 . - 0 ID=Physo137919;Parent=Physo137919;rank=1 scaffold_58 . exon 327032 330505 . - . ID=Physo137919.1;Parent=Physo137919;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 331562 332517 . + . ID=Physo137920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580093;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 331562 332517 . + . ID=Physo137920;Parent=Physo137920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 331562 332440 . + 0 ID=Physo137920;Parent=Physo137920;rank=1 scaffold_58 . exon 331562 332517 . + . ID=Physo137920.1;Parent=Physo137920;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 333349 334554 . + . ID=Physo137921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580094;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 333349 334554 . + . ID=Physo137921;Parent=Physo137921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 333349 334554 . + 0 ID=Physo137921;Parent=Physo137921;rank=1 scaffold_58 . exon 333349 334554 . + . ID=Physo137921.1;Parent=Physo137921;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 335222 336590 . - . ID=Physo137922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580095;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 335222 336590 . - . ID=Physo137922;Parent=Physo137922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 335222 335276 . - 0 ID=Physo137922;Parent=Physo137922;rank=6 scaffold_58 . exon 335222 335276 . - . ID=Physo137922.6;Parent=Physo137922;constitutive=1;ensembl_phase=2;rank=6 scaffold_58 . CDS 335353 335555 . - 0 ID=Physo137922;Parent=Physo137922;rank=5 scaffold_58 . exon 335353 335555 . - . ID=Physo137922.5;Parent=Physo137922;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_58 . CDS 335642 335752 . - 0 ID=Physo137922;Parent=Physo137922;rank=4 scaffold_58 . exon 335642 335752 . - . ID=Physo137922.4;Parent=Physo137922;constitutive=1;rank=4 scaffold_58 . CDS 335822 336178 . - 0 ID=Physo137922;Parent=Physo137922;rank=3 scaffold_58 . exon 335822 336178 . - . ID=Physo137922.3;Parent=Physo137922;constitutive=1;rank=3 scaffold_58 . CDS 336290 336398 . - 0 ID=Physo137922;Parent=Physo137922;rank=2 scaffold_58 . exon 336290 336398 . - . ID=Physo137922.2;Parent=Physo137922;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . CDS 336484 336521 . - 0 ID=Physo137922;Parent=Physo137922;rank=1 scaffold_58 . exon 336484 336590 . - . ID=Physo137922.1;Parent=Physo137922;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_58 . repeat_region 341879 341898 . ? . description=trf scaffold_58 . repeat_region 341890 341942 . ? . description=trf scaffold_58 . repeat_region 341903 341978 . ? . description=dust scaffold_58 . repeat_region 341920 342003 . ? . description=trf scaffold_58 . repeat_region 341939 342001 . ? . description=trf scaffold_58 . repeat_region 341980 342029 . ? . description=trf scaffold_58 . repeat_region 342620 342643 . ? . description=trf scaffold_58 . repeat_region 345883 345923 . ? . description=trf scaffold_58 ensembl protein_coding_gene 345968 346658 . - . ID=Physo137923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580096;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 345968 346658 . - . ID=Physo137923;Parent=Physo137923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 345968 345982 . - 0 ID=Physo137923;Parent=Physo137923;rank=3 scaffold_58 . exon 345968 345982 . - . ID=Physo137923.3;Parent=Physo137923;constitutive=1;rank=3 scaffold_58 . CDS 346136 346284 . - 0 ID=Physo137923;Parent=Physo137923;rank=2 scaffold_58 . exon 346136 346284 . - . ID=Physo137923.2;Parent=Physo137923;constitutive=1;ensembl_phase=1;rank=2 scaffold_58 . CDS 346448 346658 . - 0 ID=Physo137923;Parent=Physo137923;rank=1 scaffold_58 . exon 346448 346658 . - . ID=Physo137923.1;Parent=Physo137923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . biological_region 349189 349193 0.999 + . logic_name=eponine scaffold_58 . biological_region 349631 349634 0.999 - . logic_name=eponine scaffold_58 . biological_region 349857 349858 0.999 + . logic_name=eponine scaffold_58 . biological_region 351329 351330 0.999 - . logic_name=eponine scaffold_58 . biological_region 351476 351476 0.999 - . logic_name=eponine scaffold_58 . biological_region 351498 351499 0.999 - . logic_name=eponine scaffold_58 . biological_region 351553 351556 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 347761 348237 . - . ID=Physo137924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580097;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 347761 348237 . - . ID=Physo137924;Parent=Physo137924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 347761 348237 . - 0 ID=Physo137924;Parent=Physo137924;rank=1 scaffold_58 . exon 347761 348237 . - . ID=Physo137924.1;Parent=Physo137924;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 351584 351925 . + . ID=Physo137925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580098;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 351584 351925 . + . ID=Physo137925;Parent=Physo137925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 351584 351925 . + 0 ID=Physo137925;Parent=Physo137925;rank=1 scaffold_58 . exon 351584 351925 . + . ID=Physo137925.1;Parent=Physo137925;constitutive=1;rank=1 scaffold_58 . repeat_region 359165 359262 . ? . description=trf scaffold_58 . repeat_region 359225 359437 . ? . description=trf scaffold_58 . repeat_region 360458 360465 . ? . description=dust scaffold_58 . repeat_region 361804 361837 . ? . description=trf scaffold_58 . repeat_region 365124 365133 . ? . description=dust scaffold_58 . repeat_region 365199 365207 . ? . description=dust scaffold_58 ensembl protein_coding_gene 357057 357582 . - . ID=Physo137926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580099;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 357057 357582 . - . ID=Physo137926;Parent=Physo137926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 357057 357104 . - 0 ID=Physo137926;Parent=Physo137926;rank=3 scaffold_58 . exon 357057 357104 . - . ID=Physo137926.3;Parent=Physo137926;constitutive=1;rank=3 scaffold_58 . CDS 357224 357298 . - 0 ID=Physo137926;Parent=Physo137926;rank=2 scaffold_58 . exon 357224 357298 . - . ID=Physo137926.2;Parent=Physo137926;constitutive=1;rank=2 scaffold_58 . CDS 357364 357582 . - 0 ID=Physo137926;Parent=Physo137926;rank=1 scaffold_58 . exon 357364 357582 . - . ID=Physo137926.1;Parent=Physo137926;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 362296 362831 . + . ID=Physo137927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580100;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 362296 362831 . + . ID=Physo137927;Parent=Physo137927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 362296 362669 . + 0 ID=Physo137927;Parent=Physo137927;rank=1 scaffold_58 . exon 362296 362669 . + . ID=Physo137927.1;Parent=Physo137927;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 362750 362831 . + 0 ID=Physo137927;Parent=Physo137927;rank=2 scaffold_58 . exon 362750 362831 . + . ID=Physo137927.2;Parent=Physo137927;constitutive=1;ensembl_phase=2;rank=2 scaffold_58 . biological_region 370015 370016 0.999 + . logic_name=eponine scaffold_58 . biological_region 370126 370128 0.999 - . logic_name=eponine scaffold_58 . biological_region 370403 370407 0.999 + . logic_name=eponine scaffold_58 . biological_region 370416 370421 0.999 - . logic_name=eponine scaffold_58 . biological_region 370435 370439 0.999 + . logic_name=eponine scaffold_58 . biological_region 370472 370479 0.999 + . logic_name=eponine scaffold_58 . biological_region 370506 370509 0.999 - . logic_name=eponine scaffold_58 . biological_region 370527 370527 0.999 - . logic_name=eponine scaffold_58 . biological_region 370563 370566 0.999 + . logic_name=eponine scaffold_58 . biological_region 370805 370811 0.999 - . logic_name=eponine scaffold_58 . biological_region 370818 370822 0.999 + . logic_name=eponine scaffold_58 . biological_region 370834 370838 0.999 + . logic_name=eponine scaffold_58 . biological_region 370845 370848 0.999 + . logic_name=eponine scaffold_58 . biological_region 370881 370888 0.999 + . logic_name=eponine scaffold_58 . biological_region 371014 371015 0.999 + . logic_name=eponine scaffold_58 . biological_region 371293 371297 0.999 - . logic_name=eponine scaffold_58 . biological_region 371790 371794 0.999 - . logic_name=eponine scaffold_58 . biological_region 373737 373742 0.999 + . logic_name=eponine scaffold_58 . biological_region 373899 373899 0.999 + . logic_name=eponine scaffold_58 . biological_region 373899 373899 0.999 - . logic_name=eponine scaffold_58 . biological_region 373939 373940 0.999 - . logic_name=eponine scaffold_58 . biological_region 373948 373954 0.999 - . logic_name=eponine scaffold_58 . biological_region 373972 373977 0.999 - . logic_name=eponine scaffold_58 . biological_region 374765 374767 0.999 - . logic_name=eponine scaffold_58 ensembl protein_coding_gene 370251 376695 . + . ID=Physo137928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580101;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 370251 376695 . + . ID=Physo137928;Parent=Physo137928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 370251 371005 . + 0 ID=Physo137928;Parent=Physo137928;rank=1 scaffold_58 . exon 370251 371005 . + . ID=Physo137928.1;Parent=Physo137928;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_58 . CDS 371309 374104 . + 0 ID=Physo137928;Parent=Physo137928;rank=2 scaffold_58 . exon 371309 374104 . + . ID=Physo137928.2;Parent=Physo137928;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_58 . CDS 374383 374521 . + 0 ID=Physo137928;Parent=Physo137928;rank=3 scaffold_58 . exon 374383 374521 . + . ID=Physo137928.3;Parent=Physo137928;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 . CDS 374595 374853 . + 0 ID=Physo137928;Parent=Physo137928;rank=4 scaffold_58 . exon 374595 374853 . + . ID=Physo137928.4;Parent=Physo137928;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_58 . CDS 374932 375068 . + 0 ID=Physo137928;Parent=Physo137928;rank=5 scaffold_58 . exon 374932 375068 . + . ID=Physo137928.5;Parent=Physo137928;constitutive=1;ensembl_phase=1;rank=5 scaffold_58 . CDS 375178 376695 . + 0 ID=Physo137928;Parent=Physo137928;rank=6 scaffold_58 . exon 375178 376695 . + . ID=Physo137928.6;Parent=Physo137928;constitutive=1;rank=6 scaffold_58 . repeat_region 376948 377017 . ? . description=trf scaffold_58 . repeat_region 380648 380699 . ? . description=trf scaffold_58 . repeat_region 382945 382952 . ? . description=dust scaffold_58 ensembl protein_coding_gene 376765 378621 . - . ID=Physo137929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580102;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 376765 378621 . - . ID=Physo137929;Parent=Physo137929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 376765 378621 . - . ID=Physo137929.1;Parent=Physo137929;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_58 . CDS 376870 378621 . - 0 ID=Physo137929;Parent=Physo137929;rank=1 scaffold_58 ensembl protein_coding_gene 379003 380900 . + . ID=Physo137930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580103;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 379003 380900 . + . ID=Physo137930;Parent=Physo137930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 379003 380900 . + . ID=Physo137930.1;Parent=Physo137930;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 379035 380795 . + 0 ID=Physo137930;Parent=Physo137930;rank=1 scaffold_58 ensembl protein_coding_gene 380970 382706 . - . ID=Physo137931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580104;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 380970 382706 . - . ID=Physo137931;Parent=Physo137931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 380970 382706 . - 0 ID=Physo137931;Parent=Physo137931;rank=1 scaffold_58 . exon 380970 382706 . - . ID=Physo137931.1;Parent=Physo137931;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 385235 386974 . - . ID=Physo137933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580106;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 385235 386974 . - . ID=Physo137933;Parent=Physo137933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 385235 386974 . - . ID=Physo137933.1;Parent=Physo137933;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_58 . CDS 385265 386974 . - 0 ID=Physo137933;Parent=Physo137933;rank=1 scaffold_58 . biological_region 386903 386909 0.999 + . logic_name=eponine scaffold_58 . biological_region 386947 386951 0.999 - . logic_name=eponine scaffold_58 . biological_region 386984 386986 0.999 - . logic_name=eponine scaffold_58 . biological_region 392643 392647 0.999 + . logic_name=eponine scaffold_58 . biological_region 392714 392717 0.999 + . logic_name=eponine scaffold_58 . biological_region 396135 396137 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 387482 388477 . + . ID=Physo137934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580107;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 387482 388477 . + . ID=Physo137934;Parent=Physo137934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 387482 388477 . + 0 ID=Physo137934;Parent=Physo137934;rank=1 scaffold_58 . exon 387482 388477 . + . ID=Physo137934.1;Parent=Physo137934;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 389238 397267 . - . ID=Physo157743;biotype=protein_coding;external_name=C_scaffold_58000037;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 389238 397267 . - . ID=Physo157743;Parent=Physo157743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 389238 389261 . - 0 ID=Physo157743;Parent=Physo157743;rank=14 scaffold_58 . exon 389238 389261 . - . ID=Physo157743.14;Parent=Physo157743;constitutive=1;rank=14 scaffold_58 . CDS 389341 390335 . - 0 ID=Physo157743;Parent=Physo157743;rank=13 scaffold_58 . exon 389341 390335 . - . ID=Physo157743.13;Parent=Physo157743;constitutive=1;ensembl_phase=1;rank=13 scaffold_58 . CDS 390509 391167 . - 0 ID=Physo157743;Parent=Physo157743;rank=12 scaffold_58 . exon 390509 391167 . - . ID=Physo157743.12;Parent=Physo157743;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_58 . CDS 391553 392143 . - 0 ID=Physo157743;Parent=Physo157743;rank=11 scaffold_58 . exon 391553 392143 . - . ID=Physo157743.11;Parent=Physo157743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_58 . CDS 392670 392866 . - 0 ID=Physo157743;Parent=Physo157743;rank=10 scaffold_58 . exon 392670 392866 . - . ID=Physo157743.10;Parent=Physo157743;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_58 . CDS 393357 394447 . - 0 ID=Physo157743;Parent=Physo157743;rank=9 scaffold_58 . exon 393357 394447 . - . ID=Physo157743.9;Parent=Physo157743;constitutive=1;ensembl_phase=1;rank=9 scaffold_58 . CDS 394487 395302 . - 0 ID=Physo157743;Parent=Physo157743;rank=8 scaffold_58 . exon 394487 395302 . - . ID=Physo157743.8;Parent=Physo157743;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_58 . CDS 395366 395605 . - 0 ID=Physo157743;Parent=Physo157743;rank=7 scaffold_58 . exon 395366 395605 . - . ID=Physo157743.7;Parent=Physo157743;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_58 . CDS 395844 395944 . - 0 ID=Physo157743;Parent=Physo157743;rank=6 scaffold_58 . exon 395844 395944 . - . ID=Physo157743.6;Parent=Physo157743;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_58 . CDS 396026 396447 . - 0 ID=Physo157743;Parent=Physo157743;rank=5 scaffold_58 . exon 396026 396447 . - . ID=Physo157743.5;Parent=Physo157743;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_58 . CDS 396528 396617 . - 0 ID=Physo157743;Parent=Physo157743;rank=4 scaffold_58 . CDS 396690 396734 . - 0 ID=Physo157743;Parent=Physo157743;rank=3 scaffold_58 . CDS 396806 397054 . - 0 ID=Physo157743;Parent=Physo157743;rank=2 scaffold_58 . CDS 397133 397267 . - 0 ID=Physo157743;Parent=Physo157743;rank=1 scaffold_58 . repeat_region 401315 401363 . ? . description=trf scaffold_58 . repeat_region 401556 401605 . ? . description=dust scaffold_58 ensembl protein_coding_gene 405809 406820 . + . ID=Physo109087;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_580012;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 405809 406820 . + . ID=Physo109087;Parent=Physo109087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 405809 406820 . + . ID=Physo109087.1;Parent=Physo109087;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 405825 406697 . + 0 ID=Physo109087;Parent=Physo109087;rank=1 scaffold_58 ensembl protein_coding_gene 398393 399159 . + . ID=Physo137936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580109;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 398393 399159 . + . ID=Physo137936;Parent=Physo137936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 398393 399159 . + . ID=Physo137936.1;Parent=Physo137936;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 398554 399060 . + 0 ID=Physo137936;Parent=Physo137936;rank=1 scaffold_58 ensembl protein_coding_gene 400361 401131 . + . ID=Physo137937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580110;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 400361 401131 . + . ID=Physo137937;Parent=Physo137937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 400361 401131 . + 0 ID=Physo137937;Parent=Physo137937;rank=1 scaffold_58 . exon 400361 401131 . + . ID=Physo137937.1;Parent=Physo137937;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 404264 405106 . + . ID=Physo137938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580111;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 404264 405106 . + . ID=Physo137938;Parent=Physo137938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 404264 405106 . + 0 ID=Physo137938;Parent=Physo137938;rank=1 scaffold_58 . exon 404264 405106 . + . ID=Physo137938.1;Parent=Physo137938;constitutive=1;rank=1 scaffold_58 . exon 396528 396617 . - . ID=Physo157743.4;Parent=Physo157743;constitutive=1;rank=4 scaffold_58 . exon 396690 396734 . - . ID=Physo157743.3;Parent=Physo157743;constitutive=1;rank=3 scaffold_58 . exon 396806 397054 . - . ID=Physo157743.2;Parent=Physo157743;constitutive=1;rank=2 scaffold_58 . exon 397133 397267 . - . ID=Physo157743.1;Parent=Physo157743;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 397736 398195 . - . ID=Physo157744;biotype=protein_coding;external_name=C_scaffold_58000038;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 397736 398195 . - . ID=Physo157744;Parent=Physo157744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 397736 397783 . - 0 ID=Physo157744;Parent=Physo157744;rank=3 scaffold_58 . exon 397736 397783 . - . ID=Physo157744.3;Parent=Physo157744;constitutive=1;rank=3 scaffold_58 . CDS 397869 397994 . - 0 ID=Physo157744;Parent=Physo157744;rank=2 scaffold_58 . exon 397869 397994 . - . ID=Physo157744.2;Parent=Physo157744;constitutive=1;rank=2 scaffold_58 . CDS 398088 398195 . - 0 ID=Physo157744;Parent=Physo157744;rank=1 scaffold_58 . exon 398088 398195 . - . ID=Physo157744.1;Parent=Physo157744;constitutive=1;rank=1 scaffold_58 . biological_region 406473 406477 0.999 + . logic_name=eponine scaffold_58 . biological_region 406539 406544 0.999 - . logic_name=eponine scaffold_58 . biological_region 412009 412012 0.999 - . logic_name=eponine scaffold_58 . biological_region 412082 412082 0.999 + . logic_name=eponine scaffold_58 ensembl tRNA_gene 409953 410025 . + . ID=EPrPSOG00000000044;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_58 ensembl transcript 409953 410025 . + . ID=EPrPSOT00000000044;Parent=EPrPSOG00000000044;biotype=tRNA;logic_name=ncrna_eg scaffold_58 . exon 409953 410025 . + . ID=EPrPSOE00000000044;Parent=EPrPSOT00000000044;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 ensembl protein_coding_gene 407027 409224 . - . ID=Physo137940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580113;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 407027 409224 . - . ID=Physo137940;Parent=Physo137940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 407027 407417 . - 0 ID=Physo137940;Parent=Physo137940;rank=4 scaffold_58 . exon 407027 407417 . - . ID=Physo137940.4;Parent=Physo137940;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 407483 408102 . - 0 ID=Physo137940;Parent=Physo137940;rank=3 scaffold_58 . exon 407483 408102 . - . ID=Physo137940.3;Parent=Physo137940;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_58 . CDS 408223 408414 . - 0 ID=Physo137940;Parent=Physo137940;rank=2 scaffold_58 . exon 408223 408414 . - . ID=Physo137940.2;Parent=Physo137940;constitutive=1;rank=2 scaffold_58 . CDS 408619 409224 . - 0 ID=Physo137940;Parent=Physo137940;rank=1 scaffold_58 . exon 408619 409224 . - . ID=Physo137940.1;Parent=Physo137940;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 410200 411359 . - . ID=Physo137941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580114;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 410200 411359 . - . ID=Physo137941;Parent=Physo137941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 410200 411219 . - 0 ID=Physo137941;Parent=Physo137941;rank=1 scaffold_58 . exon 410200 411225 . - . ID=Physo137941.2;Parent=Physo137941;constitutive=1;ensembl_phase=-1;rank=2 scaffold_58 . exon 411355 411359 . - . ID=Physo137941.1;Parent=Physo137941;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_58 ensembl protein_coding_gene 411722 413926 . - . ID=Physo137942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580115;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 411722 413926 . - . ID=Physo137942;Parent=Physo137942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 411722 412201 . - 0 ID=Physo137942;Parent=Physo137942;rank=7 scaffold_58 . exon 411722 412201 . - . ID=Physo137942.7;Parent=Physo137942;constitutive=1;rank=7 scaffold_58 . CDS 412279 412353 . - 0 ID=Physo137942;Parent=Physo137942;rank=6 scaffold_58 . exon 412279 412353 . - . ID=Physo137942.6;Parent=Physo137942;constitutive=1;rank=6 scaffold_58 . CDS 412437 412520 . - 0 ID=Physo137942;Parent=Physo137942;rank=5 scaffold_58 . exon 412437 412520 . - . ID=Physo137942.5;Parent=Physo137942;constitutive=1;rank=5 scaffold_58 . CDS 412593 412713 . - 0 ID=Physo137942;Parent=Physo137942;rank=4 scaffold_58 . exon 412593 412713 . - . ID=Physo137942.4;Parent=Physo137942;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 412781 412858 . - 0 ID=Physo137942;Parent=Physo137942;rank=3 scaffold_58 . exon 412781 412858 . - . ID=Physo137942.3;Parent=Physo137942;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_58 . CDS 412940 413172 . - 0 ID=Physo137942;Parent=Physo137942;rank=2 scaffold_58 . exon 412940 413172 . - . ID=Physo137942.2;Parent=Physo137942;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_58 . CDS 413237 413926 . - 0 ID=Physo137942;Parent=Physo137942;rank=1 scaffold_58 . exon 413237 413926 . - . ID=Physo137942.1;Parent=Physo137942;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 414397 415762 . + . ID=Physo137943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580116;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 414397 415762 . + . ID=Physo137943;Parent=Physo137943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 414397 414600 . + 0 ID=Physo137943;Parent=Physo137943;rank=1 scaffold_58 . exon 414397 414600 . + . ID=Physo137943.1;Parent=Physo137943;constitutive=1;rank=1 scaffold_58 . CDS 414669 414881 . + 0 ID=Physo137943;Parent=Physo137943;rank=2 scaffold_58 . exon 414669 414881 . + . ID=Physo137943.2;Parent=Physo137943;constitutive=1;rank=2 scaffold_58 . CDS 415023 415031 . + 0 ID=Physo137943;Parent=Physo137943;rank=3 scaffold_58 . exon 415023 415031 . + . ID=Physo137943.3;Parent=Physo137943;constitutive=1;rank=3 scaffold_58 . CDS 415094 415198 . + 0 ID=Physo137943;Parent=Physo137943;rank=4 scaffold_58 . exon 415094 415198 . + . ID=Physo137943.4;Parent=Physo137943;constitutive=1;rank=4 scaffold_58 . CDS 415274 415589 . + 0 ID=Physo137943;Parent=Physo137943;rank=5 scaffold_58 . exon 415274 415589 . + . ID=Physo137943.5;Parent=Physo137943;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_58 . CDS 415716 415762 . + 0 ID=Physo137943;Parent=Physo137943;rank=6 scaffold_58 . exon 415716 415762 . + . ID=Physo137943.6;Parent=Physo137943;constitutive=1;ensembl_phase=1;rank=6 scaffold_58 . repeat_region 416389 416421 . ? . description=trf scaffold_58 . repeat_region 417763 417816 . ? . description=trf scaffold_58 . repeat_region 418060 418122 . ? . description=trf scaffold_58 . repeat_region 424581 424621 . ? . description=trf scaffold_58 . repeat_region 424581 424624 . ? . description=trf scaffold_58 . repeat_region 425339 425346 . ? . description=dust scaffold_58 ensembl protein_coding_gene 416789 418676 . + . ID=Physo137944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580117;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 416789 418676 . + . ID=Physo137944;Parent=Physo137944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 416789 416969 . + 0 ID=Physo137944;Parent=Physo137944;rank=1 scaffold_58 . exon 416789 416969 . + . ID=Physo137944.1;Parent=Physo137944;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_58 . CDS 417059 418220 . + 0 ID=Physo137944;Parent=Physo137944;rank=2 scaffold_58 . exon 417059 418220 . + . ID=Physo137944.2;Parent=Physo137944;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_58 . CDS 418299 418614 . + 0 ID=Physo137944;Parent=Physo137944;rank=3 scaffold_58 . exon 418299 418676 . + . ID=Physo137944.3;Parent=Physo137944;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_58 ensembl protein_coding_gene 419432 421123 . - . ID=Physo137945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580118;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 419432 421123 . - . ID=Physo137945;Parent=Physo137945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 419432 419474 . - 0 ID=Physo137945;Parent=Physo137945;rank=7 scaffold_58 . exon 419432 419474 . - . ID=Physo137945.7;Parent=Physo137945;constitutive=1;ensembl_phase=2;rank=7 scaffold_58 . CDS 419757 419976 . - 0 ID=Physo137945;Parent=Physo137945;rank=6 scaffold_58 . exon 419757 419976 . - . ID=Physo137945.6;Parent=Physo137945;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_58 . CDS 420036 420446 . - 0 ID=Physo137945;Parent=Physo137945;rank=5 scaffold_58 . exon 420036 420446 . - . ID=Physo137945.5;Parent=Physo137945;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_58 . CDS 420506 420614 . - 0 ID=Physo137945;Parent=Physo137945;rank=4 scaffold_58 . exon 420506 420614 . - . ID=Physo137945.4;Parent=Physo137945;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_58 . CDS 420710 420840 . - 0 ID=Physo137945;Parent=Physo137945;rank=3 scaffold_58 . exon 420710 420840 . - . ID=Physo137945.3;Parent=Physo137945;constitutive=1;ensembl_phase=1;rank=3 scaffold_58 . CDS 420930 421074 . - 0 ID=Physo137945;Parent=Physo137945;rank=2 scaffold_58 . exon 420930 421074 . - . ID=Physo137945.2;Parent=Physo137945;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_58 . CDS 421121 421123 . - 0 ID=Physo137945;Parent=Physo137945;rank=1 scaffold_58 . exon 421121 421123 . - . ID=Physo137945.1;Parent=Physo137945;constitutive=1;rank=1 scaffold_58 ensembl protein_coding_gene 421372 423180 . + . ID=Physo137946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580119;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 421372 423180 . + . ID=Physo137946;Parent=Physo137946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 421372 421386 . + 0 ID=Physo137946;Parent=Physo137946;rank=1 scaffold_58 . exon 421372 421386 . + . ID=Physo137946.1;Parent=Physo137946;constitutive=1;rank=1 scaffold_58 . CDS 421461 421649 . + 0 ID=Physo137946;Parent=Physo137946;rank=2 scaffold_58 . exon 421461 421649 . + . ID=Physo137946.2;Parent=Physo137946;constitutive=1;rank=2 scaffold_58 . CDS 421688 422068 . + 0 ID=Physo137946;Parent=Physo137946;rank=3 scaffold_58 . exon 421688 422068 . + . ID=Physo137946.3;Parent=Physo137946;constitutive=1;rank=3 scaffold_58 . CDS 422118 422875 . + 0 ID=Physo137946;Parent=Physo137946;rank=4 scaffold_58 . exon 422118 422875 . + . ID=Physo137946.4;Parent=Physo137946;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_58 . CDS 422901 423033 . + 0 ID=Physo137946;Parent=Physo137946;rank=5 scaffold_58 . exon 422901 423180 . + . ID=Physo137946.5;Parent=Physo137946;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_58 ensembl protein_coding_gene 424460 425548 . + . ID=Physo137947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580120;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 424460 425548 . + . ID=Physo137947;Parent=Physo137947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 424460 424558 . + 0 ID=Physo137947;Parent=Physo137947;rank=1 scaffold_58 . exon 424460 424558 . + . ID=Physo137947.1;Parent=Physo137947;constitutive=1;rank=1 scaffold_58 . CDS 424629 425096 . + 0 ID=Physo137947;Parent=Physo137947;rank=2 scaffold_58 . exon 424629 425096 . + . ID=Physo137947.2;Parent=Physo137947;constitutive=1;rank=2 scaffold_58 . CDS 425163 425276 . + 0 ID=Physo137947;Parent=Physo137947;rank=3 scaffold_58 . exon 425163 425276 . + . ID=Physo137947.3;Parent=Physo137947;constitutive=1;rank=3 scaffold_58 . CDS 425357 425548 . + 0 ID=Physo137947;Parent=Physo137947;rank=4 scaffold_58 . exon 425357 425548 . + . ID=Physo137947.4;Parent=Physo137947;constitutive=1;rank=4 scaffold_58 . biological_region 434321 434322 0.999 + . logic_name=eponine scaffold_58 ensembl protein_coding_gene 430220 430961 . + . ID=Physo137948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580121;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 430220 430961 . + . ID=Physo137948;Parent=Physo137948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . exon 430220 430548 . + . ID=Physo137948.1;Parent=Physo137948;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_58 . CDS 430311 430548 . + 0 ID=Physo137948;Parent=Physo137948;rank=1 scaffold_58 . CDS 430608 430803 . + 0 ID=Physo137948;Parent=Physo137948;rank=2 scaffold_58 . exon 430608 430803 . + . ID=Physo137948.2;Parent=Physo137948;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_58 . CDS 430829 430961 . + 0 ID=Physo137948;Parent=Physo137948;rank=3 scaffold_58 . exon 430829 430961 . + . ID=Physo137948.3;Parent=Physo137948;constitutive=1;ensembl_phase=2;rank=3 scaffold_58 ensembl protein_coding_gene 434383 435659 . + . ID=Physo137949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_580122;logic_name=jgi_physo1_1 scaffold_58 ensembl transcript 434383 435659 . + . ID=Physo137949;Parent=Physo137949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_58 . CDS 434383 434859 . + 0 ID=Physo137949;Parent=Physo137949;rank=1 scaffold_58 . exon 434383 434859 . + . ID=Physo137949.1;Parent=Physo137949;constitutive=1;rank=1 scaffold_58 . CDS 434924 435156 . + 0 ID=Physo137949;Parent=Physo137949;rank=2 scaffold_58 . exon 434924 435156 . + . ID=Physo137949.2;Parent=Physo137949;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_58 . CDS 435238 435315 . + 0 ID=Physo137949;Parent=Physo137949;rank=3 scaffold_58 . exon 435238 435315 . + . ID=Physo137949.3;Parent=Physo137949;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_58 . CDS 435383 435503 . + 0 ID=Physo137949;Parent=Physo137949;rank=4 scaffold_58 . exon 435383 435503 . + . ID=Physo137949.4;Parent=Physo137949;constitutive=1;ensembl_phase=2;rank=4 scaffold_58 . CDS 435576 435659 . + 0 ID=Physo137949;Parent=Physo137949;rank=5 scaffold_58 . exon 435576 435659 . + . ID=Physo137949.5;Parent=Physo137949;constitutive=1;rank=5 ##gff-version 3 ##sequence-region scaffold_59 1 441603 scaffold_59 . repeat_region 612 620 . ? . description=dust scaffold_59 . repeat_region 1372 2728 . ? . description=dust scaffold_59 . repeat_region 3847 11943 . ? . description=dust scaffold_59 ensembl protein_coding_gene 2976 3750 . + . ID=Physo137950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590001;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 2976 3750 . + . ID=Physo137950;Parent=Physo137950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 2976 3687 . + 0 ID=Physo137950;Parent=Physo137950;rank=1 scaffold_59 . exon 2976 3687 . + . ID=Physo137950.1;Parent=Physo137950;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . CDS 3731 3750 . + 0 ID=Physo137950;Parent=Physo137950;rank=2 scaffold_59 . exon 3731 3750 . + . ID=Physo137950.2;Parent=Physo137950;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . biological_region 17573 17573 0.999 - . logic_name=eponine scaffold_59 . biological_region 18232 18234 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 17542 19764 . + . ID=Physo137951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590002;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 17542 19764 . + . ID=Physo137951;Parent=Physo137951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 17542 17642 . + 0 ID=Physo137951;Parent=Physo137951;rank=1 scaffold_59 . exon 17542 17642 . + . ID=Physo137951.1;Parent=Physo137951;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 17812 18935 . + 0 ID=Physo137951;Parent=Physo137951;rank=2 scaffold_59 . exon 17812 18935 . + . ID=Physo137951.2;Parent=Physo137951;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 19158 19256 . + 0 ID=Physo137951;Parent=Physo137951;rank=3 scaffold_59 . exon 19158 19256 . + . ID=Physo137951.3;Parent=Physo137951;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 19602 19693 . + 0 ID=Physo137951;Parent=Physo137951;rank=4 scaffold_59 . exon 19602 19693 . + . ID=Physo137951.4;Parent=Physo137951;constitutive=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 19759 19764 . + 0 ID=Physo137951;Parent=Physo137951;rank=5 scaffold_59 . repeat_region 20464 20472 . ? . description=dust scaffold_59 . repeat_region 23533 23541 . ? . description=dust scaffold_59 . repeat_region 27195 27202 . ? . description=dust scaffold_59 . exon 19759 19764 . + . ID=Physo137951.5;Parent=Physo137951;constitutive=1;rank=5 scaffold_59 ensembl protein_coding_gene 24575 27580 . + . ID=Physo137952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590003;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 24575 27580 . + . ID=Physo137952;Parent=Physo137952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 24575 24675 . + 0 ID=Physo137952;Parent=Physo137952;rank=1 scaffold_59 . exon 24575 24675 . + . ID=Physo137952.1;Parent=Physo137952;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 24800 26382 . + 0 ID=Physo137952;Parent=Physo137952;rank=2 scaffold_59 . exon 24800 26382 . + . ID=Physo137952.2;Parent=Physo137952;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 26785 26944 . + 0 ID=Physo137952;Parent=Physo137952;rank=3 scaffold_59 . exon 26785 26944 . + . ID=Physo137952.3;Parent=Physo137952;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_59 . CDS 27151 27166 . + 0 ID=Physo137952;Parent=Physo137952;rank=4 scaffold_59 . exon 27151 27166 . + . ID=Physo137952.4;Parent=Physo137952;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 27265 27547 . + 0 ID=Physo137952;Parent=Physo137952;rank=5 scaffold_59 . exon 27265 27547 . + . ID=Physo137952.5;Parent=Physo137952;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_59 . CDS 27570 27580 . + 0 ID=Physo137952;Parent=Physo137952;rank=6 scaffold_59 . exon 27570 27580 . + . ID=Physo137952.6;Parent=Physo137952;constitutive=1;ensembl_phase=1;rank=6 scaffold_59 . repeat_region 38662 38698 . ? . description=trf scaffold_59 . repeat_region 41925 41932 . ? . description=dust scaffold_59 . biological_region 46244 46249 0.999 - . logic_name=eponine scaffold_59 . repeat_region 47022 47083 . ? . description=dust scaffold_59 . repeat_region 47500 47587 . ? . description=dust scaffold_59 . biological_region 48603 48604 0.999 + . logic_name=eponine scaffold_59 . repeat_region 49931 49983 . ? . description=trf scaffold_59 . repeat_region 49948 49992 . ? . description=trf scaffold_59 . repeat_region 49966 50010 . ? . description=trf scaffold_59 . repeat_region 55161 55205 . ? . description=trf scaffold_59 ensembl protein_coding_gene 50536 53208 . + . ID=Physo119019;biotype=protein_coding;external_name=estExt_Genewise1.C_590030;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 50536 53208 . + . ID=Physo119019;Parent=Physo119019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 50536 52567 . + . ID=Physo119019.1;Parent=Physo119019;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_59 . CDS 50578 52567 . + 0 ID=Physo119019;Parent=Physo119019;rank=1 scaffold_59 . CDS 52655 53208 . + 0 ID=Physo119019;Parent=Physo119019;rank=2 scaffold_59 . exon 52655 53208 . + . ID=Physo119019.2;Parent=Physo119019;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 ensembl protein_coding_gene 54285 55760 . - . ID=Physo137954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590005;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 54285 55760 . - . ID=Physo137954;Parent=Physo137954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 54285 55760 . - 0 ID=Physo137954;Parent=Physo137954;rank=1 scaffold_59 . exon 54285 55760 . - . ID=Physo137954.1;Parent=Physo137954;constitutive=1;rank=1 scaffold_59 . repeat_region 61392 74367 . ? . description=dust scaffold_59 . biological_region 76899 76903 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 74368 75250 . + . ID=Physo137955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590006;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 74368 75250 . + . ID=Physo137955;Parent=Physo137955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 74368 75250 . + . ID=Physo137955.1;Parent=Physo137955;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_59 . CDS 74385 75071 . + 0 ID=Physo137955;Parent=Physo137955;rank=1 scaffold_59 ensembl protein_coding_gene 75367 76029 . - . ID=Physo137956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590007;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 75367 76029 . - . ID=Physo137956;Parent=Physo137956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 75367 75444 . - 0 ID=Physo137956;Parent=Physo137956;rank=2 scaffold_59 . exon 75367 75444 . - . ID=Physo137956.2;Parent=Physo137956;constitutive=1;rank=2 scaffold_59 . CDS 75523 76029 . - 0 ID=Physo137956;Parent=Physo137956;rank=1 scaffold_59 . exon 75523 76029 . - . ID=Physo137956.1;Parent=Physo137956;constitutive=1;rank=1 scaffold_59 . repeat_region 78688 78695 . ? . description=dust scaffold_59 ensembl protein_coding_gene 78893 80677 . - . ID=Physo137957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590008;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 78893 80677 . - . ID=Physo137957;Parent=Physo137957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 78893 80677 . - 0 ID=Physo137957;Parent=Physo137957;rank=1 scaffold_59 . exon 78893 80677 . - . ID=Physo137957.1;Parent=Physo137957;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 80982 82676 . + . ID=Physo137958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590009;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 80982 82676 . + . ID=Physo137958;Parent=Physo137958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 80982 82676 . + 0 ID=Physo137958;Parent=Physo137958;rank=1 scaffold_59 . exon 80982 82676 . + . ID=Physo137958.1;Parent=Physo137958;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 82802 85504 . - . ID=Physo137959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590010;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 82802 85504 . - . ID=Physo137959;Parent=Physo137959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 82802 85238 . - . ID=Physo137959.2;Parent=Physo137959;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_59 . CDS 82872 85238 . - 0 ID=Physo137959;Parent=Physo137959;rank=2 scaffold_59 . CDS 85331 85504 . - 0 ID=Physo137959;Parent=Physo137959;rank=1 scaffold_59 . exon 85331 85504 . - . ID=Physo137959.1;Parent=Physo137959;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 85720 91260 . + . ID=Physo137960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590011;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 85720 91260 . + . ID=Physo137960;Parent=Physo137960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 85720 85867 . + 0 ID=Physo137960;Parent=Physo137960;rank=1 scaffold_59 . exon 85720 85867 . + . ID=Physo137960.1;Parent=Physo137960;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . CDS 85943 87071 . + 0 ID=Physo137960;Parent=Physo137960;rank=2 scaffold_59 . exon 85943 87071 . + . ID=Physo137960.2;Parent=Physo137960;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_59 . CDS 87129 89250 . + 0 ID=Physo137960;Parent=Physo137960;rank=3 scaffold_59 . exon 87129 89250 . + . ID=Physo137960.3;Parent=Physo137960;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 89572 91260 . + 0 ID=Physo137960;Parent=Physo137960;rank=4 scaffold_59 . biological_region 90886 90888 0.999 - . logic_name=eponine scaffold_59 . biological_region 91824 91827 0.999 - . logic_name=eponine scaffold_59 . biological_region 95763 95765 0.999 - . logic_name=eponine scaffold_59 . biological_region 96654 96657 0.999 + . logic_name=eponine scaffold_59 . exon 89572 91260 . + . ID=Physo137960.4;Parent=Physo137960;constitutive=1;rank=4 scaffold_59 ensembl protein_coding_gene 91420 97407 . - . ID=Physo137961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590012;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 91420 97407 . - . ID=Physo137961;Parent=Physo137961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 91420 97407 . - 0 ID=Physo137961;Parent=Physo137961;rank=1 scaffold_59 . exon 91420 97407 . - . ID=Physo137961.1;Parent=Physo137961;constitutive=1;rank=1 scaffold_59 . repeat_region 98192 98201 . ? . description=dust scaffold_59 . repeat_region 99688 99704 . ? . description=dust scaffold_59 . repeat_region 103629 103715 . ? . description=trf scaffold_59 . repeat_region 105337 105434 . + . description=(CCCCAG)n scaffold_59 . repeat_region 105340 105409 . ? . description=trf scaffold_59 . repeat_region 105502 105538 . ? . description=dust scaffold_59 . repeat_region 105511 105538 . ? . description=trf scaffold_59 ensembl protein_coding_gene 98824 99255 . + . ID=Physo119032;biotype=protein_coding;external_name=estExt_Genewise1.C_590043;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 98824 99255 . + . ID=Physo119032;Parent=Physo119032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 98824 99255 . + 0 ID=Physo119032;Parent=Physo119032;rank=1 scaffold_59 . exon 98824 99255 . + . ID=Physo119032.1;Parent=Physo119032;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 100404 101912 . - . ID=Physo137963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590014;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 100404 101912 . - . ID=Physo137963;Parent=Physo137963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 100404 101912 . - 0 ID=Physo137963;Parent=Physo137963;rank=1 scaffold_59 . exon 100404 101912 . - . ID=Physo137963.1;Parent=Physo137963;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 102625 105558 . + . ID=Physo137964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590015;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 102625 105558 . + . ID=Physo137964;Parent=Physo137964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 102625 105558 . + 0 ID=Physo137964;Parent=Physo137964;rank=1 scaffold_59 . exon 102625 105558 . + . ID=Physo137964.1;Parent=Physo137964;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 107604 108371 . - . ID=Physo137965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590016;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 107604 108371 . - . ID=Physo137965;Parent=Physo137965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 107604 107802 . - 0 ID=Physo137965;Parent=Physo137965;rank=2 scaffold_59 . exon 107604 107802 . - . ID=Physo137965.2;Parent=Physo137965;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 107974 108371 . - 0 ID=Physo137965;Parent=Physo137965;rank=1 scaffold_59 . biological_region 108151 108154 0.999 + . logic_name=eponine scaffold_59 . biological_region 108275 108275 0.999 - . logic_name=eponine scaffold_59 . biological_region 109804 109807 0.999 + . logic_name=eponine scaffold_59 . exon 107974 108371 . - . ID=Physo137965.1;Parent=Physo137965;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 116468 117108 . + . ID=Physo137966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590017;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 116468 117108 . + . ID=Physo137966;Parent=Physo137966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 116468 117006 . + 0 ID=Physo137966;Parent=Physo137966;rank=1 scaffold_59 . exon 116468 117006 . + . ID=Physo137966.1;Parent=Physo137966;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 117075 117108 . + 0 ID=Physo137966;Parent=Physo137966;rank=2 scaffold_59 . exon 117075 117108 . + . ID=Physo137966.2;Parent=Physo137966;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . repeat_region 120356 120363 . ? . description=dust scaffold_59 . repeat_region 122278 122298 . ? . description=dust scaffold_59 . repeat_region 122278 122298 . ? . description=trf scaffold_59 . repeat_region 122387 122438 . ? . description=trf scaffold_59 . repeat_region 124710 125190 . - . description=Gypsy-2-I_PI-int scaffold_59 . repeat_region 125861 125873 . ? . description=dust scaffold_59 ensembl protein_coding_gene 125819 126700 . - . ID=Physo109088;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_590001;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 125819 126700 . - . ID=Physo109088;Parent=Physo109088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 125819 126700 . - 0 ID=Physo109088;Parent=Physo109088;rank=1 scaffold_59 . exon 125819 126700 . - . ID=Physo109088.1;Parent=Physo109088;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 124060 125355 . - . ID=Physo137967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590018;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 124060 125355 . - . ID=Physo137967;Parent=Physo137967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 124060 125355 . - 0 ID=Physo137967;Parent=Physo137967;rank=1 scaffold_59 . exon 124060 125355 . - . ID=Physo137967.1;Parent=Physo137967;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 126814 129948 . - . ID=Physo137969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590020;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 126814 129948 . - . ID=Physo137969;Parent=Physo137969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 126814 127419 . - . ID=Physo137969.4;Parent=Physo137969;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_59 . CDS 126815 127419 . - 0 ID=Physo137969;Parent=Physo137969;rank=4 scaffold_59 . CDS 127791 129064 . - 0 ID=Physo137969;Parent=Physo137969;rank=3 scaffold_59 . CDS 129590 129839 . - 0 ID=Physo137969;Parent=Physo137969;rank=2 scaffold_59 . CDS 129933 129948 . - 0 ID=Physo137969;Parent=Physo137969;rank=1 scaffold_59 . biological_region 128106 128107 0.999 - . logic_name=eponine scaffold_59 . biological_region 129563 129567 0.999 + . logic_name=eponine scaffold_59 . biological_region 129632 129639 0.999 + . logic_name=eponine scaffold_59 . biological_region 130986 130986 0.999 + . logic_name=eponine scaffold_59 . biological_region 130997 130999 0.999 - . logic_name=eponine scaffold_59 . biological_region 131040 131041 0.999 - . logic_name=eponine scaffold_59 . biological_region 133851 133851 0.999 + . logic_name=eponine scaffold_59 . exon 127791 129064 . - . ID=Physo137969.3;Parent=Physo137969;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_59 . exon 129590 129839 . - . ID=Physo137969.2;Parent=Physo137969;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_59 . exon 129933 129948 . - . ID=Physo137969.1;Parent=Physo137969;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 130594 132263 . + . ID=Physo137970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590021;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 130594 132263 . + . ID=Physo137970;Parent=Physo137970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 130594 131117 . + 0 ID=Physo137970;Parent=Physo137970;rank=1 scaffold_59 . exon 130594 131117 . + . ID=Physo137970.1;Parent=Physo137970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 131244 131523 . + 0 ID=Physo137970;Parent=Physo137970;rank=2 scaffold_59 . exon 131244 131523 . + . ID=Physo137970.2;Parent=Physo137970;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 131571 132263 . + 0 ID=Physo137970;Parent=Physo137970;rank=3 scaffold_59 . exon 131571 132263 . + . ID=Physo137970.3;Parent=Physo137970;constitutive=1;rank=3 scaffold_59 ensembl protein_coding_gene 133123 136125 . - . ID=Physo137971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590022;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 133123 136125 . - . ID=Physo137971;Parent=Physo137971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 133123 133485 . - 0 ID=Physo137971;Parent=Physo137971;rank=8 scaffold_59 . exon 133123 133485 . - . ID=Physo137971.8;Parent=Physo137971;constitutive=1;rank=8 scaffold_59 . CDS 133564 133990 . - 0 ID=Physo137971;Parent=Physo137971;rank=7 scaffold_59 . exon 133564 133990 . - . ID=Physo137971.7;Parent=Physo137971;constitutive=1;ensembl_phase=2;rank=7 scaffold_59 . CDS 134059 134196 . - 0 ID=Physo137971;Parent=Physo137971;rank=6 scaffold_59 . exon 134059 134196 . - . ID=Physo137971.6;Parent=Physo137971;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_59 . CDS 134581 134977 . - 0 ID=Physo137971;Parent=Physo137971;rank=5 scaffold_59 . exon 134581 134977 . - . ID=Physo137971.5;Parent=Physo137971;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_59 . CDS 135057 135315 . - 0 ID=Physo137971;Parent=Physo137971;rank=4 scaffold_59 . exon 135057 135315 . - . ID=Physo137971.4;Parent=Physo137971;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_59 . CDS 135459 135586 . - 0 ID=Physo137971;Parent=Physo137971;rank=3 scaffold_59 . exon 135459 135586 . - . ID=Physo137971.3;Parent=Physo137971;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 135635 135924 . - 0 ID=Physo137971;Parent=Physo137971;rank=2 scaffold_59 . exon 135635 135924 . - . ID=Physo137971.2;Parent=Physo137971;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 135986 136125 . - 0 ID=Physo137971;Parent=Physo137971;rank=1 scaffold_59 . exon 135986 136125 . - . ID=Physo137971.1;Parent=Physo137971;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 136927 137984 . + . ID=Physo137972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590023;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 136927 137984 . + . ID=Physo137972;Parent=Physo137972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 136927 137040 . + 0 ID=Physo137972;Parent=Physo137972;rank=1 scaffold_59 . exon 136927 137040 . + . ID=Physo137972.1;Parent=Physo137972;constitutive=1;rank=1 scaffold_59 . CDS 137103 137179 . + 0 ID=Physo137972;Parent=Physo137972;rank=2 scaffold_59 . exon 137103 137179 . + . ID=Physo137972.2;Parent=Physo137972;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . CDS 137256 137678 . + 0 ID=Physo137972;Parent=Physo137972;rank=3 scaffold_59 . exon 137256 137678 . + . ID=Physo137972.3;Parent=Physo137972;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_59 . CDS 137742 137932 . + 0 ID=Physo137972;Parent=Physo137972;rank=4 scaffold_59 . CDS 137962 137984 . + 0 ID=Physo137972;Parent=Physo137972;rank=5 scaffold_59 . repeat_region 140079 140086 . ? . description=dust scaffold_59 . repeat_region 144704 144711 . ? . description=dust scaffold_59 . exon 137742 137932 . + . ID=Physo137972.4;Parent=Physo137972;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_59 . exon 137962 137984 . + . ID=Physo137972.5;Parent=Physo137972;constitutive=1;ensembl_phase=1;rank=5 scaffold_59 ensembl protein_coding_gene 138125 140674 . - . ID=Physo137973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590024;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 138125 140674 . - . ID=Physo137973;Parent=Physo137973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 138125 138490 . - 0 ID=Physo137973;Parent=Physo137973;rank=7 scaffold_59 . exon 138125 138490 . - . ID=Physo137973.7;Parent=Physo137973;constitutive=1;rank=7 scaffold_59 . CDS 138566 138658 . - 0 ID=Physo137973;Parent=Physo137973;rank=6 scaffold_59 . exon 138566 138658 . - . ID=Physo137973.6;Parent=Physo137973;constitutive=1;rank=6 scaffold_59 . CDS 138737 140034 . - 0 ID=Physo137973;Parent=Physo137973;rank=5 scaffold_59 . exon 138737 140034 . - . ID=Physo137973.5;Parent=Physo137973;constitutive=1;ensembl_phase=1;rank=5 scaffold_59 . CDS 140110 140183 . - 0 ID=Physo137973;Parent=Physo137973;rank=4 scaffold_59 . exon 140110 140183 . - . ID=Physo137973.4;Parent=Physo137973;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 140256 140336 . - 0 ID=Physo137973;Parent=Physo137973;rank=3 scaffold_59 . exon 140256 140336 . - . ID=Physo137973.3;Parent=Physo137973;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_59 . CDS 140414 140526 . - 0 ID=Physo137973;Parent=Physo137973;rank=2 scaffold_59 . exon 140414 140526 . - . ID=Physo137973.2;Parent=Physo137973;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . CDS 140597 140674 . - 0 ID=Physo137973;Parent=Physo137973;rank=1 scaffold_59 . exon 140597 140674 . - . ID=Physo137973.1;Parent=Physo137973;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 146245 147067 . - . ID=Physo137974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590025;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 146245 147067 . - . ID=Physo137974;Parent=Physo137974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 146245 146276 . - 0 ID=Physo137974;Parent=Physo137974;rank=4 scaffold_59 . exon 146245 146276 . - . ID=Physo137974.4;Parent=Physo137974;constitutive=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 146448 146589 . - 0 ID=Physo137974;Parent=Physo137974;rank=3 scaffold_59 . exon 146448 146589 . - . ID=Physo137974.3;Parent=Physo137974;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_59 . CDS 146773 146956 . - 0 ID=Physo137974;Parent=Physo137974;rank=2 scaffold_59 . exon 146773 146956 . - . ID=Physo137974.2;Parent=Physo137974;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 147033 147067 . - 0 ID=Physo137974;Parent=Physo137974;rank=1 scaffold_59 . exon 147033 147067 . - . ID=Physo137974.1;Parent=Physo137974;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . biological_region 148165 148165 0.999 + . logic_name=eponine scaffold_59 . repeat_region 155303 155475 . ? . description=trf scaffold_59 . repeat_region 156469 156496 . ? . description=trf scaffold_59 . repeat_region 156469 156518 . ? . description=trf scaffold_59 ensembl protein_coding_gene 147996 148313 . + . ID=Physo137975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590026;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 147996 148313 . + . ID=Physo137975;Parent=Physo137975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 147996 148313 . + 0 ID=Physo137975;Parent=Physo137975;rank=1 scaffold_59 . exon 147996 148313 . + . ID=Physo137975.1;Parent=Physo137975;constitutive=1;rank=1 scaffold_59 . repeat_region 165545 165552 . ? . description=dust scaffold_59 . biological_region 175850 175860 0.999 - . logic_name=eponine scaffold_59 ensembl protein_coding_gene 167896 168660 . - . ID=Physo137976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590027;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 167896 168660 . - . ID=Physo137976;Parent=Physo137976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 167896 168660 . - 0 ID=Physo137976;Parent=Physo137976;rank=1 scaffold_59 . exon 167896 168660 . - . ID=Physo137976.1;Parent=Physo137976;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 170314 174454 . - . ID=Physo137977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590028;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 170314 174454 . - . ID=Physo137977;Parent=Physo137977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 170314 170804 . - 0 ID=Physo137977;Parent=Physo137977;rank=7 scaffold_59 . exon 170314 170804 . - . ID=Physo137977.7;Parent=Physo137977;constitutive=1;ensembl_phase=1;rank=7 scaffold_59 . CDS 171208 171648 . - 0 ID=Physo137977;Parent=Physo137977;rank=6 scaffold_59 . exon 171208 171648 . - . ID=Physo137977.6;Parent=Physo137977;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_59 . CDS 172095 172337 . - 0 ID=Physo137977;Parent=Physo137977;rank=5 scaffold_59 . exon 172095 172337 . - . ID=Physo137977.5;Parent=Physo137977;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_59 . CDS 172455 172927 . - 0 ID=Physo137977;Parent=Physo137977;rank=4 scaffold_59 . exon 172455 172927 . - . ID=Physo137977.4;Parent=Physo137977;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 173076 173127 . - 0 ID=Physo137977;Parent=Physo137977;rank=3 scaffold_59 . exon 173076 173127 . - . ID=Physo137977.3;Parent=Physo137977;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_59 . CDS 173155 173752 . - 0 ID=Physo137977;Parent=Physo137977;rank=2 scaffold_59 . exon 173155 173752 . - . ID=Physo137977.2;Parent=Physo137977;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 173831 174454 . - 0 ID=Physo137977;Parent=Physo137977;rank=1 scaffold_59 . exon 173831 174454 . - . ID=Physo137977.1;Parent=Physo137977;constitutive=1;rank=1 scaffold_59 . repeat_region 176792 176809 . ? . description=dust scaffold_59 . repeat_region 176941 176948 . ? . description=dust scaffold_59 . repeat_region 178334 178383 . ? . description=trf scaffold_59 . repeat_region 178356 178383 . ? . description=dust scaffold_59 . repeat_region 178356 178383 . ? . description=trf scaffold_59 . biological_region 193887 193887 0.999 + . logic_name=eponine scaffold_59 . biological_region 193905 193908 0.999 + . logic_name=eponine scaffold_59 . biological_region 195552 195555 0.999 - . logic_name=eponine scaffold_59 ensembl protein_coding_gene 190969 192545 . - . ID=Physo137978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590029;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 190969 192545 . - . ID=Physo137978;Parent=Physo137978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 190969 191833 . - 0 ID=Physo137978;Parent=Physo137978;rank=3 scaffold_59 . exon 190969 191833 . - . ID=Physo137978.3;Parent=Physo137978;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 . CDS 192158 192266 . - 0 ID=Physo137978;Parent=Physo137978;rank=2 scaffold_59 . exon 192158 192266 . - . ID=Physo137978.2;Parent=Physo137978;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_59 . CDS 192392 192545 . - 0 ID=Physo137978;Parent=Physo137978;rank=1 scaffold_59 . exon 192392 192545 . - . ID=Physo137978.1;Parent=Physo137978;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 194439 196112 . + . ID=Physo137979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590030;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 194439 196112 . + . ID=Physo137979;Parent=Physo137979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 194439 194785 . + 0 ID=Physo137979;Parent=Physo137979;rank=1 scaffold_59 . exon 194439 194785 . + . ID=Physo137979.1;Parent=Physo137979;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 194860 195520 . + 0 ID=Physo137979;Parent=Physo137979;rank=2 scaffold_59 . exon 194860 195520 . + . ID=Physo137979.2;Parent=Physo137979;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 195705 196112 . + 0 ID=Physo137979;Parent=Physo137979;rank=3 scaffold_59 . exon 195705 196112 . + . ID=Physo137979.3;Parent=Physo137979;constitutive=1;rank=3 scaffold_59 . repeat_region 197833 197842 . ? . description=dust scaffold_59 . repeat_region 203235 203271 . ? . description=trf scaffold_59 ensembl protein_coding_gene 200012 200917 . - . ID=Physo109089;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_590002;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 200012 200917 . - . ID=Physo109089;Parent=Physo109089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 200012 200917 . - 0 ID=Physo109089;Parent=Physo109089;rank=1 scaffold_59 . exon 200012 200917 . - . ID=Physo109089.1;Parent=Physo109089;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 198461 199783 . + . ID=Physo137980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590031;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 198461 199783 . + . ID=Physo137980;Parent=Physo137980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 198461 199783 . + 0 ID=Physo137980;Parent=Physo137980;rank=1 scaffold_59 . exon 198461 199783 . + . ID=Physo137980.1;Parent=Physo137980;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 201143 202114 . - . ID=Physo137982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590033;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 201143 202114 . - . ID=Physo137982;Parent=Physo137982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 201143 201719 . - 0 ID=Physo137982;Parent=Physo137982;rank=2 scaffold_59 . exon 201143 201719 . - . ID=Physo137982.2;Parent=Physo137982;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 201816 202114 . - 0 ID=Physo137982;Parent=Physo137982;rank=1 scaffold_59 . exon 201816 202114 . - . ID=Physo137982.1;Parent=Physo137982;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 202489 204195 . - . ID=Physo137983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590034;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 202489 204195 . - . ID=Physo137983;Parent=Physo137983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 202489 204195 . - 0 ID=Physo137983;Parent=Physo137983;rank=1 scaffold_59 . exon 202489 204195 . - . ID=Physo137983.1;Parent=Physo137983;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 205152 206849 . + . ID=Physo137984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590035;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 205152 206849 . + . ID=Physo137984;Parent=Physo137984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 205152 206849 . + 0 ID=Physo137984;Parent=Physo137984;rank=1 scaffold_59 . exon 205152 206849 . + . ID=Physo137984.1;Parent=Physo137984;constitutive=1;rank=1 scaffold_59 . biological_region 207337 207337 0.999 + . logic_name=eponine scaffold_59 . biological_region 207894 207896 0.999 + . logic_name=eponine scaffold_59 . biological_region 209524 209528 0.999 - . logic_name=eponine scaffold_59 . biological_region 210178 210179 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 209761 210363 . - . ID=Physo119048;biotype=protein_coding;external_name=estExt_Genewise1.C_590059;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 209761 210363 . - . ID=Physo119048;Parent=Physo119048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 209761 210363 . - 0 ID=Physo119048;Parent=Physo119048;rank=1 scaffold_59 . exon 209761 210363 . - . ID=Physo119048.1;Parent=Physo119048;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 207055 209760 . - . ID=Physo137985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590036;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 207055 209760 . - . ID=Physo137985;Parent=Physo137985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 207055 209583 . - 0 ID=Physo137985;Parent=Physo137985;rank=1 scaffold_59 . exon 207055 209760 . - . ID=Physo137985.1;Parent=Physo137985;constitutive=1;ensembl_phase=-1;rank=1 scaffold_59 ensembl protein_coding_gene 213281 216113 . - . ID=Physo137987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590038;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 213281 216113 . - . ID=Physo137987;Parent=Physo137987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 213281 215702 . - 0 ID=Physo137987;Parent=Physo137987;rank=2 scaffold_59 . exon 213281 215702 . - . ID=Physo137987.2;Parent=Physo137987;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 215767 216113 . - 0 ID=Physo137987;Parent=Physo137987;rank=1 scaffold_59 . exon 215767 216113 . - . ID=Physo137987.1;Parent=Physo137987;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . repeat_region 217077 217112 . ? . description=trf scaffold_59 . repeat_region 225672 225679 . ? . description=dust scaffold_59 ensembl protein_coding_gene 216674 217327 . + . ID=Physo137988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590039;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 216674 217327 . + . ID=Physo137988;Parent=Physo137988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 216674 217327 . + 0 ID=Physo137988;Parent=Physo137988;rank=1 scaffold_59 . exon 216674 217327 . + . ID=Physo137988.1;Parent=Physo137988;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 217632 218820 . - . ID=Physo137989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590040;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 217632 218820 . - . ID=Physo137989;Parent=Physo137989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 217632 217794 . - 0 ID=Physo137989;Parent=Physo137989;rank=4 scaffold_59 . exon 217632 217794 . - . ID=Physo137989.4;Parent=Physo137989;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 217868 217997 . - 0 ID=Physo137989;Parent=Physo137989;rank=3 scaffold_59 . exon 217868 217997 . - . ID=Physo137989.3;Parent=Physo137989;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_59 . CDS 218071 218476 . - 0 ID=Physo137989;Parent=Physo137989;rank=2 scaffold_59 . exon 218071 218476 . - . ID=Physo137989.2;Parent=Physo137989;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 218557 218820 . - 0 ID=Physo137989;Parent=Physo137989;rank=1 scaffold_59 . exon 218557 218820 . - . ID=Physo137989.1;Parent=Physo137989;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 218977 220668 . - . ID=Physo137990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590041;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 218977 220668 . - . ID=Physo137990;Parent=Physo137990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 218977 220668 . - 0 ID=Physo137990;Parent=Physo137990;rank=1 scaffold_59 . exon 218977 220668 . - . ID=Physo137990.1;Parent=Physo137990;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 221247 222261 . + . ID=Physo137991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590042;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 221247 222261 . + . ID=Physo137991;Parent=Physo137991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 221247 221258 . + 0 ID=Physo137991;Parent=Physo137991;rank=1 scaffold_59 . exon 221247 221258 . + . ID=Physo137991.1;Parent=Physo137991;constitutive=1;rank=1 scaffold_59 . CDS 221492 221667 . + 0 ID=Physo137991;Parent=Physo137991;rank=2 scaffold_59 . exon 221492 221667 . + . ID=Physo137991.2;Parent=Physo137991;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . CDS 221698 221925 . + 0 ID=Physo137991;Parent=Physo137991;rank=3 scaffold_59 . exon 221698 221925 . + . ID=Physo137991.3;Parent=Physo137991;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_59 . CDS 221995 222103 . + 0 ID=Physo137991;Parent=Physo137991;rank=4 scaffold_59 . exon 221995 222261 . + . ID=Physo137991.4;Parent=Physo137991;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_59 ensembl protein_coding_gene 223285 224349 . - . ID=Physo137992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590043;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 223285 224349 . - . ID=Physo137992;Parent=Physo137992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 223285 224349 . - 0 ID=Physo137992;Parent=Physo137992;rank=1 scaffold_59 . exon 223285 224349 . - . ID=Physo137992.1;Parent=Physo137992;constitutive=1;rank=1 scaffold_59 . biological_region 226571 226574 0.999 + . logic_name=eponine scaffold_59 . biological_region 226808 226811 0.999 + . logic_name=eponine scaffold_59 . biological_region 227389 227393 0.999 - . logic_name=eponine scaffold_59 ensembl protein_coding_gene 226276 227970 . - . ID=Physo137993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590044;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 226276 227970 . - . ID=Physo137993;Parent=Physo137993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 226276 227970 . - 0 ID=Physo137993;Parent=Physo137993;rank=1 scaffold_59 . exon 226276 227970 . - . ID=Physo137993.1;Parent=Physo137993;constitutive=1;rank=1 scaffold_59 . repeat_region 236886 236935 . ? . description=trf scaffold_59 . repeat_region 244460 244545 . ? . description=trf scaffold_59 ensembl protein_coding_gene 242519 243666 . + . ID=Physo137994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590045;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 242519 243666 . + . ID=Physo137994;Parent=Physo137994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 242519 243039 . + 0 ID=Physo137994;Parent=Physo137994;rank=1 scaffold_59 . exon 242519 243039 . + . ID=Physo137994.1;Parent=Physo137994;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 243123 243666 . + 0 ID=Physo137994;Parent=Physo137994;rank=2 scaffold_59 . exon 243123 243666 . + . ID=Physo137994.2;Parent=Physo137994;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 ensembl protein_coding_gene 243688 244672 . - . ID=Physo137995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590046;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 243688 244672 . - . ID=Physo137995;Parent=Physo137995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 243688 244672 . - . ID=Physo137995.1;Parent=Physo137995;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_59 . CDS 243845 244633 . - 0 ID=Physo137995;Parent=Physo137995;rank=1 scaffold_59 ensembl protein_coding_gene 245148 246092 . - . ID=Physo137996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590047;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 245148 246092 . - . ID=Physo137996;Parent=Physo137996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 245148 246092 . - 0 ID=Physo137996;Parent=Physo137996;rank=1 scaffold_59 . exon 245148 246092 . - . ID=Physo137996.1;Parent=Physo137996;constitutive=1;rank=1 scaffold_59 . biological_region 246084 246085 0.999 + . logic_name=eponine scaffold_59 . biological_region 246116 246118 0.999 - . logic_name=eponine scaffold_59 . biological_region 247236 247236 0.999 - . logic_name=eponine scaffold_59 . biological_region 247830 247838 0.999 - . logic_name=eponine scaffold_59 . biological_region 247847 247851 0.999 - . logic_name=eponine scaffold_59 . biological_region 247863 247868 0.999 + . logic_name=eponine scaffold_59 . biological_region 247867 247868 0.999 - . logic_name=eponine scaffold_59 . biological_region 247883 247890 0.999 - . logic_name=eponine scaffold_59 . biological_region 249801 249801 0.999 - . logic_name=eponine scaffold_59 . biological_region 249849 249851 0.999 - . logic_name=eponine scaffold_59 . biological_region 251272 251274 0.999 + . logic_name=eponine scaffold_59 . biological_region 251316 251317 0.999 + . logic_name=eponine scaffold_59 . biological_region 251325 251329 0.999 + . logic_name=eponine scaffold_59 . biological_region 251336 251342 0.999 - . logic_name=eponine scaffold_59 . biological_region 251350 251356 0.999 + . logic_name=eponine scaffold_59 . biological_region 251393 251395 0.999 + . logic_name=eponine scaffold_59 . biological_region 251401 251404 0.999 - . logic_name=eponine scaffold_59 . biological_region 251441 251447 0.999 - . logic_name=eponine scaffold_59 . repeat_region 252989 252998 . ? . description=dust scaffold_59 . repeat_region 253826 253836 . ? . description=dust scaffold_59 . repeat_region 254443 254453 . ? . description=dust scaffold_59 . biological_region 254741 254745 0.999 - . logic_name=eponine scaffold_59 ensembl protein_coding_gene 246690 247430 . - . ID=Physo137997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590048;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 246690 247430 . - . ID=Physo137997;Parent=Physo137997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 246690 247430 . - 0 ID=Physo137997;Parent=Physo137997;rank=1 scaffold_59 . exon 246690 247430 . - . ID=Physo137997.1;Parent=Physo137997;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 247707 249351 . + . ID=Physo137998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590049;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 247707 249351 . + . ID=Physo137998;Parent=Physo137998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 247707 248399 . + 0 ID=Physo137998;Parent=Physo137998;rank=1 scaffold_59 . exon 247707 248399 . + . ID=Physo137998.1;Parent=Physo137998;constitutive=1;rank=1 scaffold_59 . CDS 248465 248559 . + 0 ID=Physo137998;Parent=Physo137998;rank=2 scaffold_59 . exon 248465 248559 . + . ID=Physo137998.2;Parent=Physo137998;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_59 . CDS 248624 249166 . + 0 ID=Physo137998;Parent=Physo137998;rank=3 scaffold_59 . exon 248624 249166 . + . ID=Physo137998.3;Parent=Physo137998;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_59 . CDS 249249 249351 . + 0 ID=Physo137998;Parent=Physo137998;rank=4 scaffold_59 . exon 249249 249351 . + . ID=Physo137998.4;Parent=Physo137998;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 ensembl protein_coding_gene 249537 250995 . - . ID=Physo137999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590050;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 249537 250995 . - . ID=Physo137999;Parent=Physo137999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 249537 250483 . - 0 ID=Physo137999;Parent=Physo137999;rank=2 scaffold_59 . exon 249537 250483 . - . ID=Physo137999.2;Parent=Physo137999;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 250569 250995 . - 0 ID=Physo137999;Parent=Physo137999;rank=1 scaffold_59 . exon 250569 250995 . - . ID=Physo137999.1;Parent=Physo137999;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 251230 252411 . + . ID=Physo138000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590051;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 251230 252411 . + . ID=Physo138000;Parent=Physo138000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 251230 251534 . + 0 ID=Physo138000;Parent=Physo138000;rank=1 scaffold_59 . exon 251230 251534 . + . ID=Physo138000.1;Parent=Physo138000;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 251592 251811 . + 0 ID=Physo138000;Parent=Physo138000;rank=2 scaffold_59 . exon 251592 251811 . + . ID=Physo138000.2;Parent=Physo138000;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 251863 252411 . + 0 ID=Physo138000;Parent=Physo138000;rank=3 scaffold_59 . exon 251863 252411 . + . ID=Physo138000.3;Parent=Physo138000;constitutive=1;rank=3 scaffold_59 ensembl protein_coding_gene 254515 256069 . - . ID=Physo138001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590052;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 254515 256069 . - . ID=Physo138001;Parent=Physo138001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 254515 254715 . - 0 ID=Physo138001;Parent=Physo138001;rank=5 scaffold_59 . exon 254515 254715 . - . ID=Physo138001.5;Parent=Physo138001;constitutive=1;rank=5 scaffold_59 . CDS 254741 255104 . - 0 ID=Physo138001;Parent=Physo138001;rank=4 scaffold_59 . exon 254741 255104 . - . ID=Physo138001.4;Parent=Physo138001;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 255137 255252 . - 0 ID=Physo138001;Parent=Physo138001;rank=3 scaffold_59 . exon 255137 255252 . - . ID=Physo138001.3;Parent=Physo138001;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_59 . CDS 255350 255834 . - 0 ID=Physo138001;Parent=Physo138001;rank=2 scaffold_59 . CDS 256036 256069 . - 0 ID=Physo138001;Parent=Physo138001;rank=1 scaffold_59 . repeat_region 257609 257669 . ? . description=trf scaffold_59 . repeat_region 258969 258996 . ? . description=trf scaffold_59 . repeat_region 260423 260473 . ? . description=trf scaffold_59 . repeat_region 263240 263266 . ? . description=trf scaffold_59 ensembl protein_coding_gene 263654 264289 . + . ID=Physo109090;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_590003;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 263654 264289 . + . ID=Physo109090;Parent=Physo109090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 263654 264289 . + 0 ID=Physo109090;Parent=Physo109090;rank=1 scaffold_59 . exon 263654 264289 . + . ID=Physo109090.1;Parent=Physo109090;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 264638 265393 . - . ID=Physo109091;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_590004;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 264638 265393 . - . ID=Physo109091;Parent=Physo109091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 264638 265339 . - 0 ID=Physo109091;Parent=Physo109091;rank=1 scaffold_59 . exon 264638 265393 . - . ID=Physo109091.1;Parent=Physo109091;constitutive=1;ensembl_phase=-1;rank=1 scaffold_59 . exon 255350 255834 . - . ID=Physo138001.2;Parent=Physo138001;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . exon 256036 256069 . - . ID=Physo138001.1;Parent=Physo138001;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 260048 261139 . + . ID=Physo138002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590053;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 260048 261139 . + . ID=Physo138002;Parent=Physo138002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 260048 260175 . + . ID=Physo138002.1;Parent=Physo138002;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_59 . CDS 260118 260175 . + 0 ID=Physo138002;Parent=Physo138002;rank=1 scaffold_59 . CDS 260256 261139 . + 0 ID=Physo138002;Parent=Physo138002;rank=2 scaffold_59 . exon 260256 261139 . + . ID=Physo138002.2;Parent=Physo138002;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 ensembl protein_coding_gene 261403 263464 . - . ID=Physo138003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590054;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 261403 263464 . - . ID=Physo138003;Parent=Physo138003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 261403 262924 . - . ID=Physo138003.3;Parent=Physo138003;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_59 . CDS 261535 262924 . - 0 ID=Physo138003;Parent=Physo138003;rank=3 scaffold_59 . CDS 263001 263112 . - 0 ID=Physo138003;Parent=Physo138003;rank=2 scaffold_59 . exon 263001 263112 . - . ID=Physo138003.2;Parent=Physo138003;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_59 . CDS 263200 263464 . - 0 ID=Physo138003;Parent=Physo138003;rank=1 scaffold_59 . exon 263200 263464 . - . ID=Physo138003.1;Parent=Physo138003;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . biological_region 266639 266645 0.999 - . logic_name=eponine scaffold_59 . repeat_region 266999 267006 . ? . description=dust scaffold_59 . repeat_region 269021 269028 . ? . description=dust scaffold_59 . repeat_region 274409 274445 . ? . description=dust scaffold_59 ensembl protein_coding_gene 270150 270413 . - . ID=Physo119080;biotype=protein_coding;external_name=estExt_Genewise1.C_590091;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 270150 270413 . - . ID=Physo119080;Parent=Physo119080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 270150 270371 . - 0 ID=Physo119080;Parent=Physo119080;rank=1 scaffold_59 . exon 270150 270413 . - . ID=Physo119080.1;Parent=Physo119080;constitutive=1;ensembl_phase=-1;rank=1 scaffold_59 ensembl protein_coding_gene 271759 273585 . - . ID=Physo138006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590057;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 271759 273585 . - . ID=Physo138006;Parent=Physo138006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 271759 271790 . - 0 ID=Physo138006;Parent=Physo138006;rank=3 scaffold_59 . exon 271759 271790 . - . ID=Physo138006.3;Parent=Physo138006;constitutive=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 271822 271908 . - 0 ID=Physo138006;Parent=Physo138006;rank=2 scaffold_59 . exon 271822 271908 . - . ID=Physo138006.2;Parent=Physo138006;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 271974 273585 . - 0 ID=Physo138006;Parent=Physo138006;rank=1 scaffold_59 . exon 271974 273585 . - . ID=Physo138006.1;Parent=Physo138006;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 ensembl protein_coding_gene 274578 275060 . + . ID=Physo138007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590058;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 274578 275060 . + . ID=Physo138007;Parent=Physo138007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 274578 275060 . + 0 ID=Physo138007;Parent=Physo138007;rank=1 scaffold_59 . exon 274578 275060 . + . ID=Physo138007.1;Parent=Physo138007;constitutive=1;rank=1 scaffold_59 . repeat_region 275036 275067 . ? . description=trf scaffold_59 . repeat_region 279300 279346 . ? . description=trf scaffold_59 . repeat_region 285468 285491 . ? . description=dust scaffold_59 . repeat_region 287339 287346 . ? . description=dust scaffold_59 . biological_region 287666 287669 0.999 + . logic_name=eponine scaffold_59 . biological_region 288581 288582 0.999 + . logic_name=eponine scaffold_59 . biological_region 289674 289679 0.999 - . logic_name=eponine scaffold_59 . biological_region 289732 289734 0.999 + . logic_name=eponine scaffold_59 . biological_region 289777 289778 0.999 - . logic_name=eponine scaffold_59 . repeat_region 289993 290009 . ? . description=dust scaffold_59 . repeat_region 290668 290676 . ? . description=dust scaffold_59 . repeat_region 290766 290774 . ? . description=dust scaffold_59 . repeat_region 290895 291398 . + . description=Gypsy-2-I_PI-int scaffold_59 . biological_region 293525 293527 0.999 + . logic_name=eponine scaffold_59 . biological_region 293884 293887 0.999 + . logic_name=eponine scaffold_59 . biological_region 293953 293956 0.999 + . logic_name=eponine scaffold_59 . biological_region 293978 293984 0.999 - . logic_name=eponine scaffold_59 . biological_region 294018 294022 0.999 - . logic_name=eponine scaffold_59 . biological_region 294035 294036 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 287578 288827 . - . ID=Physo118991;biotype=protein_coding;external_name=estExt_Genewise1.C_590002;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 287578 288827 . - . ID=Physo118991;Parent=Physo118991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 287578 288134 . - 0 ID=Physo118991;Parent=Physo118991;rank=2 scaffold_59 . exon 287578 288134 . - . ID=Physo118991.2;Parent=Physo118991;constitutive=1;ensembl_phase=1;rank=2 scaffold_59 . CDS 288206 288692 . - 0 ID=Physo118991;Parent=Physo118991;rank=1 scaffold_59 . exon 288206 288827 . - . ID=Physo118991.1;Parent=Physo118991;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_59 ensembl protein_coding_gene 294181 297283 . + . ID=Physo138008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590059;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 294181 297283 . + . ID=Physo138008;Parent=Physo138008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 294181 297236 . + 0 ID=Physo138008;Parent=Physo138008;rank=1 scaffold_59 . exon 294181 297236 . + . ID=Physo138008.1;Parent=Physo138008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 297277 297283 . + 0 ID=Physo138008;Parent=Physo138008;rank=2 scaffold_59 . repeat_region 294552 296932 . + . description=GypsyPi-1c_I-int scaffold_59 . repeat_region 297024 297136 . ? . description=trf scaffold_59 . repeat_region 297241 297521 . + . description=GypsyPi-1c_I-int scaffold_59 . repeat_region 298715 299006 . + . description=Gypsy-1-I_PI-int scaffold_59 ensembl protein_coding_gene 302959 306815 . + . ID=Physo118995;biotype=protein_coding;external_name=estExt_Genewise1.C_590006;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 302959 306815 . + . ID=Physo118995;Parent=Physo118995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 302959 303178 . + . ID=Physo118995.1;Parent=Physo118995;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_59 . exon 303278 304540 . + . ID=Physo118995.2;Parent=Physo118995;constitutive=1;ensembl_phase=-1;rank=2 scaffold_59 . CDS 304061 304540 . + 0 ID=Physo118995;Parent=Physo118995;rank=1 scaffold_59 . CDS 304625 304658 . + 0 ID=Physo118995;Parent=Physo118995;rank=2 scaffold_59 . CDS 304693 305009 . + 0 ID=Physo118995;Parent=Physo118995;rank=3 scaffold_59 . CDS 305091 305408 . + 0 ID=Physo118995;Parent=Physo118995;rank=4 scaffold_59 . CDS 305550 306425 . + 0 ID=Physo118995;Parent=Physo118995;rank=5 scaffold_59 . exon 297277 297283 . + . ID=Physo138008.2;Parent=Physo138008;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 ensembl protein_coding_gene 301905 302261 . + . ID=Physo138009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590060;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 301905 302261 . + . ID=Physo138009;Parent=Physo138009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 301905 302261 . + 0 ID=Physo138009;Parent=Physo138009;rank=1 scaffold_59 . exon 301905 302261 . + . ID=Physo138009.1;Parent=Physo138009;constitutive=1;rank=1 scaffold_59 . biological_region 310682 310686 0.999 + . logic_name=eponine scaffold_59 . biological_region 310706 310707 0.999 + . logic_name=eponine scaffold_59 . biological_region 310865 310868 0.999 - . logic_name=eponine scaffold_59 . biological_region 311022 311031 0.999 - . logic_name=eponine scaffold_59 . biological_region 311356 311359 0.999 + . logic_name=eponine scaffold_59 . biological_region 311382 311385 0.999 + . logic_name=eponine scaffold_59 . biological_region 311511 311513 0.999 + . logic_name=eponine scaffold_59 . biological_region 312151 312154 0.999 - . logic_name=eponine scaffold_59 . biological_region 312416 312416 0.999 - . logic_name=eponine scaffold_59 . biological_region 312420 312425 0.999 + . logic_name=eponine scaffold_59 . biological_region 312459 312464 0.999 - . logic_name=eponine scaffold_59 . biological_region 312469 312478 0.999 + . logic_name=eponine scaffold_59 . biological_region 312593 312597 0.999 - . logic_name=eponine scaffold_59 . biological_region 313806 313808 0.999 + . logic_name=eponine scaffold_59 . exon 304625 304658 . + . ID=Physo118995.3;Parent=Physo118995;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_59 . exon 304693 305009 . + . ID=Physo118995.4;Parent=Physo118995;constitutive=1;ensembl_phase=1;rank=4 scaffold_59 . exon 305091 305408 . + . ID=Physo118995.5;Parent=Physo118995;constitutive=1;rank=5 scaffold_59 . exon 305550 306815 . + . ID=Physo118995.6;Parent=Physo118995;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_59 ensembl protein_coding_gene 310856 317070 . - . ID=Physo138010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590061;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 310856 317070 . - . ID=Physo138010;Parent=Physo138010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 310856 311422 . - 0 ID=Physo138010;Parent=Physo138010;rank=6 scaffold_59 . exon 310856 311422 . - . ID=Physo138010.6;Parent=Physo138010;constitutive=1;rank=6 scaffold_59 . CDS 311452 311728 . - 0 ID=Physo138010;Parent=Physo138010;rank=5 scaffold_59 . exon 311452 311728 . - . ID=Physo138010.5;Parent=Physo138010;constitutive=1;ensembl_phase=2;rank=5 scaffold_59 . CDS 311790 314175 . - 0 ID=Physo138010;Parent=Physo138010;rank=4 scaffold_59 . exon 311790 314175 . - . ID=Physo138010.4;Parent=Physo138010;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_59 . CDS 314333 315222 . - 0 ID=Physo138010;Parent=Physo138010;rank=3 scaffold_59 . CDS 315626 315940 . - 0 ID=Physo138010;Parent=Physo138010;rank=2 scaffold_59 . CDS 316055 317070 . - 0 ID=Physo138010;Parent=Physo138010;rank=1 scaffold_59 . repeat_region 312426 314717 . - . description=GypsyPi-1c_I-int scaffold_59 . repeat_region 315279 315377 . ? . description=trf scaffold_59 . repeat_region 315977 315986 . ? . description=dust scaffold_59 . repeat_region 317756 317763 . ? . description=dust scaffold_59 . repeat_region 318569 318589 . ? . description=trf scaffold_59 ensembl tRNA_gene 319306 319378 . + . ID=EPrPSOG00000000165;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_59 ensembl transcript 319306 319378 . + . ID=EPrPSOT00000000165;Parent=EPrPSOG00000000165;biotype=tRNA;logic_name=ncrna_eg scaffold_59 . exon 319306 319378 . + . ID=EPrPSOE00000000165;Parent=EPrPSOT00000000165;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_59 . exon 314333 315222 . - . ID=Physo138010.3;Parent=Physo138010;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_59 . exon 315626 315940 . - . ID=Physo138010.2;Parent=Physo138010;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_59 . exon 316055 317070 . - . ID=Physo138010.1;Parent=Physo138010;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . biological_region 324468 324473 0.999 + . logic_name=eponine scaffold_59 . biological_region 331945 331946 0.999 + . logic_name=eponine scaffold_59 ensembl tRNA_gene 332936 333006 . + . ID=EPrPSOG00000000111;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_59 ensembl transcript 332936 333006 . + . ID=EPrPSOT00000000111;Parent=EPrPSOG00000000111;biotype=tRNA;logic_name=ncrna_eg scaffold_59 . exon 332936 333006 . + . ID=EPrPSOE00000000111;Parent=EPrPSOT00000000111;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 330335 331363 . + . ID=Physo138011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590062;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 330335 331363 . + . ID=Physo138011;Parent=Physo138011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 330335 331363 . + 0 ID=Physo138011;Parent=Physo138011;rank=1 scaffold_59 . exon 330335 331363 . + . ID=Physo138011.1;Parent=Physo138011;constitutive=1;rank=1 scaffold_59 . repeat_region 334253 334297 . ? . description=trf scaffold_59 . repeat_region 341519 341573 . ? . description=trf scaffold_59 . repeat_region 342272 342323 . ? . description=trf scaffold_59 . repeat_region 342356 342427 . ? . description=trf scaffold_59 . repeat_region 342441 342566 . ? . description=trf scaffold_59 ensembl pseudogenic_tRNA 340340 340413 . - . ID=EPrPSOG00000000054;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_59 ensembl transcript 340340 340413 . - . ID=EPrPSOT00000000054;Parent=EPrPSOG00000000054;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_59 . exon 340340 340413 . - . ID=EPrPSOE00000000054;Parent=EPrPSOT00000000054;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 336017 337687 . - . ID=Physo138012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590063;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 336017 337687 . - . ID=Physo138012;Parent=Physo138012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 336017 336237 . - 0 ID=Physo138012;Parent=Physo138012;rank=5 scaffold_59 . exon 336017 336237 . - . ID=Physo138012.5;Parent=Physo138012;constitutive=1;ensembl_phase=1;rank=5 scaffold_59 . CDS 336394 336429 . - 0 ID=Physo138012;Parent=Physo138012;rank=4 scaffold_59 . exon 336394 336429 . - . ID=Physo138012.4;Parent=Physo138012;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_59 . CDS 336491 336907 . - 0 ID=Physo138012;Parent=Physo138012;rank=3 scaffold_59 . exon 336491 336907 . - . ID=Physo138012.3;Parent=Physo138012;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 336974 337352 . - 0 ID=Physo138012;Parent=Physo138012;rank=2 scaffold_59 . exon 336974 337352 . - . ID=Physo138012.2;Parent=Physo138012;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 337682 337687 . - 0 ID=Physo138012;Parent=Physo138012;rank=1 scaffold_59 . exon 337682 337687 . - . ID=Physo138012.1;Parent=Physo138012;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 341742 342715 . + . ID=Physo138013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590064;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 341742 342715 . + . ID=Physo138013;Parent=Physo138013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 341742 342691 . + 0 ID=Physo138013;Parent=Physo138013;rank=1 scaffold_59 . exon 341742 342691 . + . ID=Physo138013.1;Parent=Physo138013;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 342712 342715 . + 0 ID=Physo138013;Parent=Physo138013;rank=2 scaffold_59 . exon 342712 342715 . + . ID=Physo138013.2;Parent=Physo138013;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . biological_region 345680 345680 0.999 - . logic_name=eponine scaffold_59 . biological_region 346419 346424 0.999 - . logic_name=eponine scaffold_59 . biological_region 346440 346441 0.999 - . logic_name=eponine scaffold_59 . repeat_region 349624 349685 . ? . description=dust scaffold_59 . repeat_region 350053 350097 . ? . description=dust scaffold_59 . biological_region 350152 350154 0.999 + . logic_name=eponine scaffold_59 . biological_region 350266 350269 0.999 - . logic_name=eponine scaffold_59 . repeat_region 351256 351441 . ? . description=dust scaffold_59 ensembl protein_coding_gene 347402 349177 . - . ID=Physo119003;biotype=protein_coding;external_name=estExt_Genewise1.C_590014;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 347402 349177 . - . ID=Physo119003;Parent=Physo119003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 347402 349147 . - 0 ID=Physo119003;Parent=Physo119003;rank=1 scaffold_59 . exon 347402 349177 . - . ID=Physo119003.1;Parent=Physo119003;constitutive=1;ensembl_phase=-1;rank=1 scaffold_59 ensembl protein_coding_gene 345113 346084 . - . ID=Physo138014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590065;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 345113 346084 . - . ID=Physo138014;Parent=Physo138014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 345113 346084 . - 0 ID=Physo138014;Parent=Physo138014;rank=1 scaffold_59 . exon 345113 346084 . - . ID=Physo138014.1;Parent=Physo138014;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 351067 353965 . + . ID=Physo138016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590067;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 351067 353965 . + . ID=Physo138016;Parent=Physo138016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 351067 351147 . + 0 ID=Physo138016;Parent=Physo138016;rank=1 scaffold_59 . exon 351067 351147 . + . ID=Physo138016.1;Parent=Physo138016;constitutive=1;rank=1 scaffold_59 . CDS 351210 351918 . + 0 ID=Physo138016;Parent=Physo138016;rank=2 scaffold_59 . exon 351210 351918 . + . ID=Physo138016.2;Parent=Physo138016;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 352150 352348 . + 0 ID=Physo138016;Parent=Physo138016;rank=3 scaffold_59 . exon 352150 352348 . + . ID=Physo138016.3;Parent=Physo138016;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_59 . CDS 352384 352394 . + 0 ID=Physo138016;Parent=Physo138016;rank=4 scaffold_59 . exon 352384 352394 . + . ID=Physo138016.4;Parent=Physo138016;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 352587 352893 . + 0 ID=Physo138016;Parent=Physo138016;rank=5 scaffold_59 . exon 352587 352893 . + . ID=Physo138016.5;Parent=Physo138016;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_59 . CDS 353014 353142 . + 0 ID=Physo138016;Parent=Physo138016;rank=6 scaffold_59 . exon 353014 353142 . + . ID=Physo138016.6;Parent=Physo138016;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_59 . CDS 353238 353387 . + 0 ID=Physo138016;Parent=Physo138016;rank=7 scaffold_59 . exon 353238 353387 . + . ID=Physo138016.7;Parent=Physo138016;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_59 . CDS 353496 353872 . + 0 ID=Physo138016;Parent=Physo138016;rank=8 scaffold_59 . CDS 353892 353965 . + 0 ID=Physo138016;Parent=Physo138016;rank=9 scaffold_59 . repeat_region 357479 357506 . ? . description=trf scaffold_59 . repeat_region 360208 360260 . ? . description=trf scaffold_59 ensembl protein_coding_gene 357941 358726 . - . ID=Physo109093;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_590006;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 357941 358726 . - . ID=Physo109093;Parent=Physo109093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 357941 358726 . - 0 ID=Physo109093;Parent=Physo109093;rank=1 scaffold_59 . exon 357941 358726 . - . ID=Physo109093.1;Parent=Physo109093;constitutive=1;rank=1 scaffold_59 . exon 353496 353872 . + . ID=Physo138016.8;Parent=Physo138016;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_59 . exon 353892 353965 . + . ID=Physo138016.9;Parent=Physo138016;constitutive=1;ensembl_phase=1;rank=9 scaffold_59 ensembl protein_coding_gene 361054 362244 . + . ID=Physo138019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590070;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 361054 362244 . + . ID=Physo138019;Parent=Physo138019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 361054 361166 . + 0 ID=Physo138019;Parent=Physo138019;rank=1 scaffold_59 . exon 361054 361166 . + . ID=Physo138019.1;Parent=Physo138019;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 361249 361354 . + 0 ID=Physo138019;Parent=Physo138019;rank=2 scaffold_59 . exon 361249 361354 . + . ID=Physo138019.2;Parent=Physo138019;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 361426 362157 . + 0 ID=Physo138019;Parent=Physo138019;rank=3 scaffold_59 . exon 361426 362244 . + . ID=Physo138019.3;Parent=Physo138019;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_59 ensembl protein_coding_gene 359372 360749 . - . ID=Physo157747;biotype=protein_coding;external_name=C_scaffold_59000002;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 359372 360749 . - . ID=Physo157747;Parent=Physo157747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 359372 359453 . - 0 ID=Physo157747;Parent=Physo157747;rank=6 scaffold_59 . exon 359372 359453 . - . ID=Physo157747.6;Parent=Physo157747;constitutive=1;ensembl_phase=2;rank=6 scaffold_59 . CDS 359526 359606 . - 0 ID=Physo157747;Parent=Physo157747;rank=5 scaffold_59 . exon 359526 359606 . - . ID=Physo157747.5;Parent=Physo157747;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_59 . CDS 359677 359800 . - 0 ID=Physo157747;Parent=Physo157747;rank=4 scaffold_59 . exon 359677 359800 . - . ID=Physo157747.4;Parent=Physo157747;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_59 . CDS 359870 360112 . - 0 ID=Physo157747;Parent=Physo157747;rank=3 scaffold_59 . exon 359870 360112 . - . ID=Physo157747.3;Parent=Physo157747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_59 . CDS 360206 360329 . - 0 ID=Physo157747;Parent=Physo157747;rank=2 scaffold_59 . exon 360206 360329 . - . ID=Physo157747.2;Parent=Physo157747;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_59 . CDS 360570 360749 . - 0 ID=Physo157747;Parent=Physo157747;rank=1 scaffold_59 . exon 360570 360749 . - . ID=Physo157747.1;Parent=Physo157747;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 362284 362619 . - . ID=Physo157749;biotype=protein_coding;external_name=C_scaffold_59000004;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 362284 362619 . - . ID=Physo157749;Parent=Physo157749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 362284 362376 . - 0 ID=Physo157749;Parent=Physo157749;rank=2 scaffold_59 . exon 362284 362376 . - . ID=Physo157749.2;Parent=Physo157749;constitutive=1;rank=2 scaffold_59 . CDS 362419 362619 . - 0 ID=Physo157749;Parent=Physo157749;rank=1 scaffold_59 . exon 362419 362619 . - . ID=Physo157749.1;Parent=Physo157749;constitutive=1;rank=1 scaffold_59 . biological_region 363822 363824 0.999 - . logic_name=eponine scaffold_59 . biological_region 363914 363918 0.999 - . logic_name=eponine scaffold_59 . biological_region 367667 367670 0.999 - . logic_name=eponine scaffold_59 . biological_region 368031 368033 0.999 - . logic_name=eponine scaffold_59 . biological_region 368107 368109 0.999 - . logic_name=eponine scaffold_59 . biological_region 368139 368143 0.999 - . logic_name=eponine scaffold_59 . biological_region 368427 368427 0.999 + . logic_name=eponine scaffold_59 . biological_region 368519 368524 0.999 + . logic_name=eponine scaffold_59 . biological_region 368825 368827 0.999 + . logic_name=eponine scaffold_59 . biological_region 369110 369115 0.999 + . logic_name=eponine scaffold_59 . biological_region 369137 369146 0.999 + . logic_name=eponine scaffold_59 . biological_region 369175 369178 0.999 - . logic_name=eponine scaffold_59 . biological_region 369217 369221 0.999 - . logic_name=eponine scaffold_59 . biological_region 369406 369410 0.999 + . logic_name=eponine scaffold_59 . biological_region 369714 369719 0.999 + . logic_name=eponine scaffold_59 . biological_region 372354 372355 0.999 - . logic_name=eponine scaffold_59 ensembl protein_coding_gene 363681 366996 . + . ID=Physo138021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590072;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 363681 366996 . + . ID=Physo138021;Parent=Physo138021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 363681 364252 . + 0 ID=Physo138021;Parent=Physo138021;rank=1 scaffold_59 . exon 363681 364252 . + . ID=Physo138021.1;Parent=Physo138021;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 . CDS 364705 365151 . + 0 ID=Physo138021;Parent=Physo138021;rank=2 scaffold_59 . exon 364705 365151 . + . ID=Physo138021.2;Parent=Physo138021;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_59 . CDS 365202 366996 . + 0 ID=Physo138021;Parent=Physo138021;rank=3 scaffold_59 . exon 365202 366996 . + . ID=Physo138021.3;Parent=Physo138021;constitutive=1;ensembl_phase=2;rank=3 scaffold_59 ensembl protein_coding_gene 367316 368308 . - . ID=Physo138022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590073;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 367316 368308 . - . ID=Physo138022;Parent=Physo138022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 367316 368308 . - 0 ID=Physo138022;Parent=Physo138022;rank=1 scaffold_59 . exon 367316 368308 . - . ID=Physo138022.1;Parent=Physo138022;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 369066 370559 . + . ID=Physo138023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590074;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 369066 370559 . + . ID=Physo138023;Parent=Physo138023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 369066 370559 . + 0 ID=Physo138023;Parent=Physo138023;rank=1 scaffold_59 . exon 369066 370559 . + . ID=Physo138023.1;Parent=Physo138023;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 372024 372863 . + . ID=Physo138024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590075;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 372024 372863 . + . ID=Physo138024;Parent=Physo138024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 372024 372863 . + 0 ID=Physo138024;Parent=Physo138024;rank=1 scaffold_59 . exon 372024 372863 . + . ID=Physo138024.1;Parent=Physo138024;constitutive=1;rank=1 scaffold_59 . repeat_region 381357 381418 . ? . description=trf scaffold_59 . repeat_region 381557 381607 . ? . description=dust scaffold_59 . repeat_region 381564 381609 . ? . description=trf scaffold_59 . repeat_region 381578 381607 . ? . description=trf scaffold_59 . repeat_region 381708 381750 . ? . description=trf scaffold_59 . repeat_region 381991 382021 . ? . description=trf scaffold_59 ensembl protein_coding_gene 373011 376670 . - . ID=Physo138025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590076;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 373011 376670 . - . ID=Physo138025;Parent=Physo138025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 373011 376670 . - 0 ID=Physo138025;Parent=Physo138025;rank=1 scaffold_59 . exon 373011 376670 . - . ID=Physo138025.1;Parent=Physo138025;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 380783 383427 . - . ID=Physo138026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590077;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 380783 383427 . - . ID=Physo138026;Parent=Physo138026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 380783 382895 . - 0 ID=Physo138026;Parent=Physo138026;rank=2 scaffold_59 . exon 380783 382895 . - . ID=Physo138026.2;Parent=Physo138026;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 382934 383427 . - 0 ID=Physo138026;Parent=Physo138026;rank=1 scaffold_59 . biological_region 382754 382758 0.999 + . logic_name=eponine scaffold_59 . biological_region 382788 382792 0.999 - . logic_name=eponine scaffold_59 . biological_region 382842 382848 0.999 + . logic_name=eponine scaffold_59 . biological_region 386224 386224 0.999 + . logic_name=eponine scaffold_59 . biological_region 386282 386284 0.999 - . logic_name=eponine scaffold_59 . biological_region 388805 388810 0.999 - . logic_name=eponine scaffold_59 . biological_region 389409 389414 0.999 - . logic_name=eponine scaffold_59 . biological_region 390712 390719 0.999 + . logic_name=eponine scaffold_59 . biological_region 390850 390853 0.999 - . logic_name=eponine scaffold_59 . biological_region 391424 391430 0.999 + . logic_name=eponine scaffold_59 . biological_region 391471 391473 0.999 - . logic_name=eponine scaffold_59 . exon 382934 383427 . - . ID=Physo138026.1;Parent=Physo138026;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 386577 388552 . - . ID=Physo138027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590078;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 386577 388552 . - . ID=Physo138027;Parent=Physo138027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 386577 388428 . - 0 ID=Physo138027;Parent=Physo138027;rank=2 scaffold_59 . exon 386577 388428 . - . ID=Physo138027.2;Parent=Physo138027;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 388518 388552 . - 0 ID=Physo138027;Parent=Physo138027;rank=1 scaffold_59 . exon 388518 388552 . - . ID=Physo138027.1;Parent=Physo138027;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 390581 392473 . + . ID=Physo138028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590079;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 390581 392473 . + . ID=Physo138028;Parent=Physo138028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 390581 392473 . + 0 ID=Physo138028;Parent=Physo138028;rank=1 scaffold_59 . exon 390581 392473 . + . ID=Physo138028.1;Parent=Physo138028;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 393112 394608 . - . ID=Physo138029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590080;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 393112 394608 . - . ID=Physo138029;Parent=Physo138029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 393112 394608 . - 0 ID=Physo138029;Parent=Physo138029;rank=1 scaffold_59 . exon 393112 394608 . - . ID=Physo138029.1;Parent=Physo138029;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 395338 397469 . - . ID=Physo138030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590081;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 395338 397469 . - . ID=Physo138030;Parent=Physo138030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 395338 397258 . - 0 ID=Physo138030;Parent=Physo138030;rank=2 scaffold_59 . exon 395338 397258 . - . ID=Physo138030.2;Parent=Physo138030;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . CDS 397408 397469 . - 0 ID=Physo138030;Parent=Physo138030;rank=1 scaffold_59 . exon 397408 397469 . - . ID=Physo138030.1;Parent=Physo138030;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 398471 400138 . - . ID=Physo138031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590082;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 398471 400138 . - . ID=Physo138031;Parent=Physo138031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 398471 400138 . - 0 ID=Physo138031;Parent=Physo138031;rank=1 scaffold_59 . exon 398471 400138 . - . ID=Physo138031.1;Parent=Physo138031;constitutive=1;rank=1 scaffold_59 . biological_region 402522 402525 0.999 + . logic_name=eponine scaffold_59 . biological_region 402586 402591 0.999 + . logic_name=eponine scaffold_59 . biological_region 408938 408940 0.999 + . logic_name=eponine scaffold_59 . biological_region 408979 408981 0.999 - . logic_name=eponine scaffold_59 . biological_region 409234 409236 0.999 + . logic_name=eponine scaffold_59 . biological_region 409236 409243 0.999 - . logic_name=eponine scaffold_59 . biological_region 409299 409302 0.999 - . logic_name=eponine scaffold_59 . repeat_region 409313 409367 . ? . description=trf scaffold_59 . biological_region 409323 409323 0.999 + . logic_name=eponine scaffold_59 . biological_region 409657 409658 0.999 + . logic_name=eponine scaffold_59 ensembl protein_coding_gene 410608 411250 . - . ID=Physo119010;biotype=protein_coding;external_name=estExt_Genewise1.C_590021;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 410608 411250 . - . ID=Physo119010;Parent=Physo119010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 410608 410633 . - . ID=Physo119010.2;Parent=Physo119010;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_59 . exon 410773 411250 . - . ID=Physo119010.1;Parent=Physo119010;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_59 . CDS 410933 411247 . - 0 ID=Physo119010;Parent=Physo119010;rank=1 scaffold_59 ensembl protein_coding_gene 402955 404136 . - . ID=Physo138032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590083;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 402955 404136 . - . ID=Physo138032;Parent=Physo138032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 402955 404136 . - 0 ID=Physo138032;Parent=Physo138032;rank=1 scaffold_59 . exon 402955 404136 . - . ID=Physo138032.1;Parent=Physo138032;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 408644 409396 . - . ID=Physo138033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590084;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 408644 409396 . - . ID=Physo138033;Parent=Physo138033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 408644 409396 . - 0 ID=Physo138033;Parent=Physo138033;rank=1 scaffold_59 . exon 408644 409396 . - . ID=Physo138033.1;Parent=Physo138033;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 409586 410404 . - . ID=Physo138034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590085;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 409586 410404 . - . ID=Physo138034;Parent=Physo138034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 409586 410404 . - 0 ID=Physo138034;Parent=Physo138034;rank=1 scaffold_59 . exon 409586 410404 . - . ID=Physo138034.1;Parent=Physo138034;constitutive=1;rank=1 scaffold_59 ensembl protein_coding_gene 411536 413847 . - . ID=Physo138036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590087;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 411536 413847 . - . ID=Physo138036;Parent=Physo138036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 411536 411742 . - 0 ID=Physo138036;Parent=Physo138036;rank=5 scaffold_59 . exon 411536 411742 . - . ID=Physo138036.5;Parent=Physo138036;constitutive=1;rank=5 scaffold_59 . CDS 411831 412047 . - 0 ID=Physo138036;Parent=Physo138036;rank=4 scaffold_59 . exon 411831 412047 . - . ID=Physo138036.4;Parent=Physo138036;constitutive=1;ensembl_phase=2;rank=4 scaffold_59 . CDS 412071 412141 . - 0 ID=Physo138036;Parent=Physo138036;rank=3 scaffold_59 . exon 412071 412141 . - . ID=Physo138036.3;Parent=Physo138036;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_59 . CDS 412194 412815 . - 0 ID=Physo138036;Parent=Physo138036;rank=2 scaffold_59 . CDS 413135 413847 . - 0 ID=Physo138036;Parent=Physo138036;rank=1 scaffold_59 . repeat_region 414168 414179 . ? . description=dust scaffold_59 ensembl protein_coding_gene 417486 418577 . - . ID=Physo119014;biotype=protein_coding;external_name=estExt_Genewise1.C_590025;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 417486 418577 . - . ID=Physo119014;Parent=Physo119014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 417486 418304 . - 0 ID=Physo119014;Parent=Physo119014;rank=1 scaffold_59 . exon 417486 418577 . - . ID=Physo119014.1;Parent=Physo119014;constitutive=1;ensembl_phase=-1;rank=1 scaffold_59 . exon 412194 412815 . - . ID=Physo138036.2;Parent=Physo138036;constitutive=1;ensembl_phase=2;rank=2 scaffold_59 . exon 413135 413847 . - . ID=Physo138036.1;Parent=Physo138036;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_59 ensembl protein_coding_gene 414432 415839 . + . ID=Physo138037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590088;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 414432 415839 . + . ID=Physo138037;Parent=Physo138037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 414432 414926 . + 0 ID=Physo138037;Parent=Physo138037;rank=1 scaffold_59 . exon 414432 414926 . + . ID=Physo138037.1;Parent=Physo138037;constitutive=1;rank=1 scaffold_59 . CDS 414997 415839 . + 0 ID=Physo138037;Parent=Physo138037;rank=2 scaffold_59 . exon 414997 415839 . + . ID=Physo138037.2;Parent=Physo138037;constitutive=1;rank=2 scaffold_59 ensembl protein_coding_gene 415998 416882 . - . ID=Physo138038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590089;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 415998 416882 . - . ID=Physo138038;Parent=Physo138038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 415998 416882 . - 0 ID=Physo138038;Parent=Physo138038;rank=1 scaffold_59 . exon 415998 416882 . - . ID=Physo138038.1;Parent=Physo138038;constitutive=1;rank=1 scaffold_59 . biological_region 426305 426312 0.999 + . logic_name=eponine scaffold_59 . biological_region 426413 426417 0.999 - . logic_name=eponine scaffold_59 ensembl protein_coding_gene 426117 426535 . - . ID=Physo119018;biotype=protein_coding;external_name=estExt_Genewise1.C_590029;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 426117 426535 . - . ID=Physo119018;Parent=Physo119018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . exon 426117 426535 . - . ID=Physo119018.1;Parent=Physo119018;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_59 . CDS 426246 426533 . - 0 ID=Physo119018;Parent=Physo119018;rank=1 scaffold_59 ensembl protein_coding_gene 422170 423375 . - . ID=Physo138040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590091;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 422170 423375 . - . ID=Physo138040;Parent=Physo138040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 422170 423375 . - 0 ID=Physo138040;Parent=Physo138040;rank=1 scaffold_59 . exon 422170 423375 . - . ID=Physo138040.1;Parent=Physo138040;constitutive=1;rank=1 scaffold_59 . repeat_region 432868 440341 . ? . description=dust scaffold_59 . repeat_region 440963 441027 . ? . description=trf scaffold_59 ensembl protein_coding_gene 431865 432717 . + . ID=Physo138041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_590092;logic_name=jgi_physo1_1 scaffold_59 ensembl transcript 431865 432717 . + . ID=Physo138041;Parent=Physo138041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_59 . CDS 431865 432530 . + 0 ID=Physo138041;Parent=Physo138041;rank=1 scaffold_59 . exon 431865 432717 . + . ID=Physo138041.1;Parent=Physo138041;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_57 1 444483 scaffold_57 . repeat_region 882 6220 . ? . description=dust scaffold_57 . repeat_region 6999 7034 . ? . description=trf scaffold_57 . repeat_region 8747 8761 . ? . description=dust scaffold_57 . biological_region 8811 8813 0.999 - . logic_name=eponine scaffold_57 . repeat_region 8853 8862 . ? . description=dust scaffold_57 . biological_region 9261 9265 0.999 - . logic_name=eponine scaffold_57 . repeat_region 18345 18532 . - . description=GypsyPi-1c_I-int scaffold_57 . repeat_region 18892 21262 . - . description=GypsyPi-1c_I-int scaffold_57 ensembl protein_coding_gene 10276 15539 . + . ID=Physo137736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570001;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 10276 15539 . + . ID=Physo137736;Parent=Physo137736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 10276 10819 . + 0 ID=Physo137736;Parent=Physo137736;rank=1 scaffold_57 . exon 10276 10819 . + . ID=Physo137736.1;Parent=Physo137736;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 10862 11361 . + 0 ID=Physo137736;Parent=Physo137736;rank=2 scaffold_57 . exon 10862 11361 . + . ID=Physo137736.2;Parent=Physo137736;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 11478 11669 . + 0 ID=Physo137736;Parent=Physo137736;rank=3 scaffold_57 . exon 11478 11669 . + . ID=Physo137736.3;Parent=Physo137736;constitutive=1;rank=3 scaffold_57 . CDS 11769 12525 . + 0 ID=Physo137736;Parent=Physo137736;rank=4 scaffold_57 . exon 11769 12525 . + . ID=Physo137736.4;Parent=Physo137736;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_57 . CDS 12753 12968 . + 0 ID=Physo137736;Parent=Physo137736;rank=5 scaffold_57 . exon 12753 12968 . + . ID=Physo137736.5;Parent=Physo137736;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_57 . CDS 13044 13462 . + 0 ID=Physo137736;Parent=Physo137736;rank=6 scaffold_57 . exon 13044 13462 . + . ID=Physo137736.6;Parent=Physo137736;constitutive=1;ensembl_phase=1;rank=6 scaffold_57 . CDS 13757 14566 . + 0 ID=Physo137736;Parent=Physo137736;rank=7 scaffold_57 . exon 13757 14566 . + . ID=Physo137736.7;Parent=Physo137736;constitutive=1;rank=7 scaffold_57 . CDS 14604 14816 . + 0 ID=Physo137736;Parent=Physo137736;rank=8 scaffold_57 . exon 14604 14816 . + . ID=Physo137736.8;Parent=Physo137736;constitutive=1;rank=8 scaffold_57 . CDS 14972 15436 . + 0 ID=Physo137736;Parent=Physo137736;rank=9 scaffold_57 . exon 14972 15436 . + . ID=Physo137736.9;Parent=Physo137736;constitutive=1;rank=9 scaffold_57 . CDS 15522 15539 . + 0 ID=Physo137736;Parent=Physo137736;rank=10 scaffold_57 . exon 15522 15539 . + . ID=Physo137736.10;Parent=Physo137736;constitutive=1;rank=10 scaffold_57 ensembl protein_coding_gene 18583 21975 . - . ID=Physo137737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570002;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 18583 21975 . - . ID=Physo137737;Parent=Physo137737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 18583 18589 . - 0 ID=Physo137737;Parent=Physo137737;rank=4 scaffold_57 . exon 18583 18589 . - . ID=Physo137737.4;Parent=Physo137737;constitutive=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 18630 19125 . - 0 ID=Physo137737;Parent=Physo137737;rank=3 scaffold_57 . exon 18630 19125 . - . ID=Physo137737.3;Parent=Physo137737;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_57 . CDS 19167 21848 . - 0 ID=Physo137737;Parent=Physo137737;rank=2 scaffold_57 . exon 19167 21848 . - . ID=Physo137737.2;Parent=Physo137737;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 21945 21975 . - 0 ID=Physo137737;Parent=Physo137737;rank=1 scaffold_57 . biological_region 20205 20205 0.999 + . logic_name=eponine scaffold_57 . biological_region 21794 21798 0.999 + . logic_name=eponine scaffold_57 . biological_region 21834 21836 0.999 + . logic_name=eponine scaffold_57 . biological_region 21859 21864 0.999 - . logic_name=eponine scaffold_57 . biological_region 21929 21932 0.999 - . logic_name=eponine scaffold_57 . repeat_region 24341 24350 . ? . description=dust scaffold_57 . biological_region 24716 24717 0.999 + . logic_name=eponine scaffold_57 . biological_region 24734 24735 0.999 + . logic_name=eponine scaffold_57 . biological_region 24830 24836 0.999 - . logic_name=eponine scaffold_57 . biological_region 25381 25384 0.999 + . logic_name=eponine scaffold_57 . biological_region 27857 27857 0.999 + . logic_name=eponine scaffold_57 . biological_region 28686 28687 0.999 - . logic_name=eponine scaffold_57 . repeat_region 28985 29026 . ? . description=trf scaffold_57 . biological_region 29041 29041 0.999 + . logic_name=eponine scaffold_57 . biological_region 29069 29070 0.999 - . logic_name=eponine scaffold_57 . biological_region 29343 29345 0.999 + . logic_name=eponine scaffold_57 . biological_region 29421 29427 0.999 - . logic_name=eponine scaffold_57 . exon 21945 21975 . - . ID=Physo137737.1;Parent=Physo137737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 26197 28813 . - . ID=Physo137738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570003;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 26197 28813 . - . ID=Physo137738;Parent=Physo137738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 26197 26777 . - 0 ID=Physo137738;Parent=Physo137738;rank=3 scaffold_57 . exon 26197 26777 . - . ID=Physo137738.3;Parent=Physo137738;constitutive=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 26819 28453 . - 0 ID=Physo137738;Parent=Physo137738;rank=2 scaffold_57 . exon 26819 28453 . - . ID=Physo137738.2;Parent=Physo137738;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 28576 28813 . - 0 ID=Physo137738;Parent=Physo137738;rank=1 scaffold_57 . exon 28576 28813 . - . ID=Physo137738.1;Parent=Physo137738;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . repeat_region 39091 39310 . - . description=GypsyPi-1c_I-int scaffold_57 ensembl protein_coding_gene 29753 31162 . + . ID=Physo137739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570004;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 29753 31162 . + . ID=Physo137739;Parent=Physo137739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 29753 29822 . + 0 ID=Physo137739;Parent=Physo137739;rank=1 scaffold_57 . exon 29753 29822 . + . ID=Physo137739.1;Parent=Physo137739;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 29871 31162 . + 0 ID=Physo137739;Parent=Physo137739;rank=2 scaffold_57 . exon 29871 31162 . + . ID=Physo137739.2;Parent=Physo137739;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . biological_region 39655 39658 0.999 - . logic_name=eponine scaffold_57 . biological_region 39711 39713 0.999 + . logic_name=eponine scaffold_57 . repeat_region 40090 40170 . ? . description=trf scaffold_57 . biological_region 42057 42057 0.999 - . logic_name=eponine scaffold_57 . repeat_region 43091 43102 . ? . description=dust scaffold_57 . repeat_region 43138 43232 . ? . description=trf scaffold_57 . biological_region 43218 43220 0.999 + . logic_name=eponine scaffold_57 . biological_region 43234 43235 0.999 - . logic_name=eponine scaffold_57 . repeat_region 43636 43728 . ? . description=trf scaffold_57 . repeat_region 43636 43728 . ? . description=trf scaffold_57 . biological_region 43722 43724 0.999 - . logic_name=eponine scaffold_57 . biological_region 43760 43763 0.999 + . logic_name=eponine scaffold_57 . biological_region 43779 43785 0.999 + . logic_name=eponine scaffold_57 . biological_region 43811 43811 0.999 + . logic_name=eponine scaffold_57 . biological_region 43815 43819 0.999 - . logic_name=eponine scaffold_57 . biological_region 43826 43831 0.999 - . logic_name=eponine scaffold_57 . biological_region 45988 45988 0.999 + . logic_name=eponine scaffold_57 . biological_region 48417 48422 0.999 + . logic_name=eponine scaffold_57 ensembl protein_coding_gene 40921 42021 . - . ID=Physo137740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570005;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 40921 42021 . - . ID=Physo137740;Parent=Physo137740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 40921 42021 . - 0 ID=Physo137740;Parent=Physo137740;rank=1 scaffold_57 . exon 40921 42021 . - . ID=Physo137740.1;Parent=Physo137740;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 43781 48608 . + . ID=Physo137741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570006;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 43781 48608 . + . ID=Physo137741;Parent=Physo137741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 43781 44629 . + 0 ID=Physo137741;Parent=Physo137741;rank=1 scaffold_57 . exon 43781 44629 . + . ID=Physo137741.1;Parent=Physo137741;constitutive=1;rank=1 scaffold_57 . CDS 45185 48566 . + 0 ID=Physo137741;Parent=Physo137741;rank=2 scaffold_57 . exon 45185 48566 . + . ID=Physo137741.2;Parent=Physo137741;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_57 . CDS 48586 48608 . + 0 ID=Physo137741;Parent=Physo137741;rank=3 scaffold_57 . exon 48586 48608 . + . ID=Physo137741.3;Parent=Physo137741;constitutive=1;ensembl_phase=1;rank=3 scaffold_57 ensembl protein_coding_gene 48962 50760 . - . ID=Physo137742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570007;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 48962 50760 . - . ID=Physo137742;Parent=Physo137742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 48962 49542 . - 0 ID=Physo137742;Parent=Physo137742;rank=2 scaffold_57 . exon 48962 49542 . - . ID=Physo137742.2;Parent=Physo137742;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 49569 50760 . - 0 ID=Physo137742;Parent=Physo137742;rank=1 scaffold_57 . repeat_region 49453 49586 . + . description=GypsyPi-1c_I-int scaffold_57 . repeat_region 51613 53961 . + . description=GypsyPi-1c_I-int scaffold_57 . exon 49569 50760 . - . ID=Physo137742.1;Parent=Physo137742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 51280 54273 . + . ID=Physo137743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570008;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 51280 54273 . + . ID=Physo137743;Parent=Physo137743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 51280 51311 . + 0 ID=Physo137743;Parent=Physo137743;rank=1 scaffold_57 . exon 51280 51311 . + . ID=Physo137743.1;Parent=Physo137743;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 51508 51873 . + 0 ID=Physo137743;Parent=Physo137743;rank=2 scaffold_57 . exon 51508 51873 . + . ID=Physo137743.2;Parent=Physo137743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_57 . CDS 51970 52369 . + 0 ID=Physo137743;Parent=Physo137743;rank=3 scaffold_57 . exon 51970 52369 . + . ID=Physo137743.3;Parent=Physo137743;constitutive=1;ensembl_phase=2;rank=3 scaffold_57 . CDS 52485 52610 . + 0 ID=Physo137743;Parent=Physo137743;rank=4 scaffold_57 . exon 52485 52610 . + . ID=Physo137743.4;Parent=Physo137743;constitutive=1;rank=4 scaffold_57 . CDS 52693 53684 . + 0 ID=Physo137743;Parent=Physo137743;rank=5 scaffold_57 . exon 52693 53684 . + . ID=Physo137743.5;Parent=Physo137743;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_57 . CDS 53705 54226 . + 0 ID=Physo137743;Parent=Physo137743;rank=6 scaffold_57 . exon 53705 54226 . + . ID=Physo137743.6;Parent=Physo137743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_57 . CDS 54267 54273 . + 0 ID=Physo137743;Parent=Physo137743;rank=7 scaffold_57 . exon 54267 54273 . + . ID=Physo137743.7;Parent=Physo137743;constitutive=1;ensembl_phase=2;rank=7 scaffold_57 ensembl protein_coding_gene 54654 55844 . - . ID=Physo137744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570009;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 54654 55844 . - . ID=Physo137744;Parent=Physo137744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 54654 55844 . - 0 ID=Physo137744;Parent=Physo137744;rank=1 scaffold_57 . exon 54654 55844 . - . ID=Physo137744.1;Parent=Physo137744;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 58866 61508 . + . ID=Physo137745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570010;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 58866 61508 . + . ID=Physo137745;Parent=Physo137745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 58866 59497 . + 0 ID=Physo137745;Parent=Physo137745;rank=1 scaffold_57 . exon 58866 59497 . + . ID=Physo137745.1;Parent=Physo137745;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 59822 59921 . + 0 ID=Physo137745;Parent=Physo137745;rank=2 scaffold_57 . CDS 60052 60761 . + 0 ID=Physo137745;Parent=Physo137745;rank=3 scaffold_57 . CDS 60940 61461 . + 0 ID=Physo137745;Parent=Physo137745;rank=4 scaffold_57 . CDS 61502 61508 . + 0 ID=Physo137745;Parent=Physo137745;rank=5 scaffold_57 . biological_region 59784 59787 0.999 + . logic_name=eponine scaffold_57 . repeat_region 59926 59975 . ? . description=dust scaffold_57 . biological_region 60447 60448 0.999 - . logic_name=eponine scaffold_57 . biological_region 60447 60453 0.999 + . logic_name=eponine scaffold_57 . repeat_region 60788 60837 . ? . description=dust scaffold_57 . biological_region 61768 61769 0.999 + . logic_name=eponine scaffold_57 . biological_region 62360 62362 0.999 - . logic_name=eponine scaffold_57 . repeat_region 62487 62571 . ? . description=dust scaffold_57 . biological_region 62844 62848 0.999 + . logic_name=eponine scaffold_57 . repeat_region 63031 63050 . ? . description=trf scaffold_57 . repeat_region 63605 63654 . ? . description=dust scaffold_57 . repeat_region 65910 65965 . ? . description=dust scaffold_57 . repeat_region 65911 65965 . ? . description=trf scaffold_57 . repeat_region 65915 65960 . ? . description=trf scaffold_57 . repeat_region 65921 65960 . ? . description=trf scaffold_57 . repeat_region 66990 67848 . ? . description=dust scaffold_57 . exon 59822 59921 . + . ID=Physo137745.2;Parent=Physo137745;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . exon 60052 60761 . + . ID=Physo137745.3;Parent=Physo137745;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_57 . exon 60940 61461 . + . ID=Physo137745.4;Parent=Physo137745;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_57 . exon 61502 61508 . + . ID=Physo137745.5;Parent=Physo137745;constitutive=1;ensembl_phase=2;rank=5 scaffold_57 ensembl protein_coding_gene 66053 66688 . + . ID=Physo137746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570011;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 66053 66688 . + . ID=Physo137746;Parent=Physo137746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 66053 66688 . + 0 ID=Physo137746;Parent=Physo137746;rank=1 scaffold_57 . exon 66053 66688 . + . ID=Physo137746.1;Parent=Physo137746;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 69322 70537 . - . ID=Physo137747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570012;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 69322 70537 . - . ID=Physo137747;Parent=Physo137747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 69322 69371 . - 0 ID=Physo137747;Parent=Physo137747;rank=4 scaffold_57 . exon 69322 69371 . - . ID=Physo137747.4;Parent=Physo137747;constitutive=1;ensembl_phase=1;rank=4 scaffold_57 . CDS 69515 69835 . - 0 ID=Physo137747;Parent=Physo137747;rank=3 scaffold_57 . exon 69515 69835 . - . ID=Physo137747.3;Parent=Physo137747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 69985 70112 . - 0 ID=Physo137747;Parent=Physo137747;rank=2 scaffold_57 . exon 69985 70112 . - . ID=Physo137747.2;Parent=Physo137747;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 70188 70537 . - 0 ID=Physo137747;Parent=Physo137747;rank=1 scaffold_57 . exon 70188 70537 . - . ID=Physo137747.1;Parent=Physo137747;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . repeat_region 74529 80070 . ? . description=dust scaffold_57 . repeat_region 80463 81733 . - . description=GypsyPi-1c_I-int scaffold_57 . biological_region 81147 81152 0.999 - . logic_name=eponine scaffold_57 . repeat_region 81798 86024 . ? . description=dust scaffold_57 . repeat_region 87457 87574 . ? . description=trf scaffold_57 . repeat_region 87602 87609 . ? . description=dust scaffold_57 ensembl protein_coding_gene 92971 93282 . - . ID=Physo137748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570013;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 92971 93282 . - . ID=Physo137748;Parent=Physo137748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 92971 93282 . - 0 ID=Physo137748;Parent=Physo137748;rank=1 scaffold_57 . exon 92971 93282 . - . ID=Physo137748.1;Parent=Physo137748;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 94564 95326 . + . ID=Physo137749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570014;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 94564 95326 . + . ID=Physo137749;Parent=Physo137749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 94564 95006 . + 0 ID=Physo137749;Parent=Physo137749;rank=1 scaffold_57 . exon 94564 95006 . + . ID=Physo137749.1;Parent=Physo137749;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 95104 95326 . + 0 ID=Physo137749;Parent=Physo137749;rank=2 scaffold_57 . exon 95104 95326 . + . ID=Physo137749.2;Parent=Physo137749;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 ensembl protein_coding_gene 97867 103655 . - . ID=Physo157677;biotype=protein_coding;external_name=C_scaffold_57000001;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 97867 103655 . - . ID=Physo157677;Parent=Physo157677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 97867 99679 . - 0 ID=Physo157677;Parent=Physo157677;rank=13 scaffold_57 . exon 97867 99679 . - . ID=Physo157677.13;Parent=Physo157677;constitutive=1;ensembl_phase=2;rank=13 scaffold_57 . CDS 99771 99883 . - 0 ID=Physo157677;Parent=Physo157677;rank=12 scaffold_57 . CDS 99923 100175 . - 0 ID=Physo157677;Parent=Physo157677;rank=11 scaffold_57 . CDS 100376 100572 . - 0 ID=Physo157677;Parent=Physo157677;rank=10 scaffold_57 . CDS 100637 101045 . - 0 ID=Physo157677;Parent=Physo157677;rank=9 scaffold_57 . CDS 101999 102019 . - 0 ID=Physo157677;Parent=Physo157677;rank=8 scaffold_57 . CDS 102090 102154 . - 0 ID=Physo157677;Parent=Physo157677;rank=7 scaffold_57 . CDS 102226 102338 . - 0 ID=Physo157677;Parent=Physo157677;rank=6 scaffold_57 . CDS 102411 102522 . - 0 ID=Physo157677;Parent=Physo157677;rank=5 scaffold_57 . CDS 102603 102683 . - 0 ID=Physo157677;Parent=Physo157677;rank=4 scaffold_57 . CDS 102779 102919 . - 0 ID=Physo157677;Parent=Physo157677;rank=3 scaffold_57 . CDS 103017 103161 . - 0 ID=Physo157677;Parent=Physo157677;rank=2 scaffold_57 . CDS 103219 103655 . - 0 ID=Physo157677;Parent=Physo157677;rank=1 scaffold_57 . biological_region 99340 99342 0.999 - . logic_name=eponine scaffold_57 . biological_region 99395 99397 0.999 + . logic_name=eponine scaffold_57 . biological_region 99489 99492 0.999 - . logic_name=eponine scaffold_57 . repeat_region 99687 99720 . ? . description=dust scaffold_57 . repeat_region 99687 99720 . ? . description=trf scaffold_57 . repeat_region 99687 99720 . + . description=(CAGT)n scaffold_57 . biological_region 99903 99910 0.999 + . logic_name=eponine scaffold_57 . biological_region 100006 100009 0.999 + . logic_name=eponine scaffold_57 . biological_region 100096 100099 0.999 - . logic_name=eponine scaffold_57 . biological_region 103142 103145 0.999 + . logic_name=eponine scaffold_57 . biological_region 103183 103186 0.999 + . logic_name=eponine scaffold_57 . biological_region 103224 103230 0.999 - . logic_name=eponine scaffold_57 . repeat_region 106019 106045 . ? . description=trf scaffold_57 . biological_region 106825 106830 0.999 + . logic_name=eponine scaffold_57 . biological_region 107386 107390 0.999 - . logic_name=eponine scaffold_57 . biological_region 107417 107418 0.999 - . logic_name=eponine scaffold_57 . biological_region 107508 107510 0.999 + . logic_name=eponine scaffold_57 . biological_region 107550 107554 0.999 + . logic_name=eponine scaffold_57 . repeat_region 107902 108118 . - . description=GypsyPi-1c_I-int scaffold_57 . repeat_region 108144 108371 . - . description=GypsyPi-1c_I-int scaffold_57 . biological_region 108463 108465 0.999 + . logic_name=eponine scaffold_57 ensembl protein_coding_gene 106722 112469 . - . ID=Physo137751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570016;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 106722 112469 . - . ID=Physo137751;Parent=Physo137751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 106722 108704 . - 0 ID=Physo137751;Parent=Physo137751;rank=3 scaffold_57 . exon 106722 108704 . - . ID=Physo137751.3;Parent=Physo137751;constitutive=1;rank=3 scaffold_57 . CDS 108787 111319 . - 0 ID=Physo137751;Parent=Physo137751;rank=2 scaffold_57 . CDS 111385 112469 . - 0 ID=Physo137751;Parent=Physo137751;rank=1 scaffold_57 . exon 99771 99883 . - . ID=Physo157677.12;Parent=Physo157677;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_57 . exon 99923 100175 . - . ID=Physo157677.11;Parent=Physo157677;constitutive=1;ensembl_phase=2;rank=11 scaffold_57 . exon 100376 100572 . - . ID=Physo157677.10;Parent=Physo157677;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_57 . exon 100637 101045 . - . ID=Physo157677.9;Parent=Physo157677;constitutive=1;ensembl_phase=2;rank=9 scaffold_57 . exon 101999 102019 . - . ID=Physo157677.8;Parent=Physo157677;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_57 . exon 102090 102154 . - . ID=Physo157677.7;Parent=Physo157677;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_57 . exon 102226 102338 . - . ID=Physo157677.6;Parent=Physo157677;constitutive=1;ensembl_phase=1;rank=6 scaffold_57 . exon 102411 102522 . - . ID=Physo157677.5;Parent=Physo157677;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_57 . exon 102603 102683 . - . ID=Physo157677.4;Parent=Physo157677;constitutive=1;rank=4 scaffold_57 . exon 102779 102919 . - . ID=Physo157677.3;Parent=Physo157677;constitutive=1;rank=3 scaffold_57 . exon 103017 103161 . - . ID=Physo157677.2;Parent=Physo157677;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . exon 103219 103655 . - . ID=Physo157677.1;Parent=Physo157677;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . exon 108787 111319 . - . ID=Physo137751.2;Parent=Physo137751;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . exon 111385 112469 . - . ID=Physo137751.1;Parent=Physo137751;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 ensembl protein_coding_gene 112909 116711 . + . ID=Physo137752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570017;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 112909 116711 . + . ID=Physo137752;Parent=Physo137752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 112909 113884 . + 0 ID=Physo137752;Parent=Physo137752;rank=1 scaffold_57 . exon 112909 113884 . + . ID=Physo137752.1;Parent=Physo137752;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 114190 116711 . + 0 ID=Physo137752;Parent=Physo137752;rank=2 scaffold_57 . exon 114190 116711 . + . ID=Physo137752.2;Parent=Physo137752;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 ensembl protein_coding_gene 118033 119586 . - . ID=Physo137753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570018;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 118033 119586 . - . ID=Physo137753;Parent=Physo137753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 118033 119586 . - 0 ID=Physo137753;Parent=Physo137753;rank=1 scaffold_57 . exon 118033 119586 . - . ID=Physo137753.1;Parent=Physo137753;constitutive=1;rank=1 scaffold_57 . biological_region 118680 118685 0.999 - . logic_name=eponine scaffold_57 . biological_region 118734 118739 0.999 - . logic_name=eponine scaffold_57 . biological_region 118748 118753 0.999 - . logic_name=eponine scaffold_57 . biological_region 119379 119384 0.999 + . logic_name=eponine scaffold_57 . repeat_region 121093 121153 . ? . description=dust scaffold_57 . repeat_region 121099 121151 . ? . description=trf scaffold_57 . biological_region 121313 121320 0.999 - . logic_name=eponine scaffold_57 . biological_region 121558 121559 0.999 + . logic_name=eponine scaffold_57 . biological_region 121827 121830 0.999 + . logic_name=eponine scaffold_57 . repeat_region 121970 122005 . ? . description=dust scaffold_57 . repeat_region 121970 122005 . ? . description=trf scaffold_57 . biological_region 122797 122801 0.999 + . logic_name=eponine scaffold_57 . repeat_region 125191 125221 . ? . description=trf scaffold_57 . repeat_region 125787 126160 . + . description=Gypsy-1-I_PI-int scaffold_57 ensembl protein_coding_gene 120313 131028 . + . ID=Physo137754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570019;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 120313 131028 . + . ID=Physo137754;Parent=Physo137754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 120313 120357 . + 0 ID=Physo137754;Parent=Physo137754;rank=1 scaffold_57 . exon 120313 120357 . + . ID=Physo137754.1;Parent=Physo137754;constitutive=1;rank=1 scaffold_57 . CDS 120428 120787 . + 0 ID=Physo137754;Parent=Physo137754;rank=2 scaffold_57 . exon 120428 120787 . + . ID=Physo137754.2;Parent=Physo137754;constitutive=1;rank=2 scaffold_57 . CDS 120854 120978 . + 0 ID=Physo137754;Parent=Physo137754;rank=3 scaffold_57 . exon 120854 120978 . + . ID=Physo137754.3;Parent=Physo137754;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_57 . CDS 121186 121290 . + 0 ID=Physo137754;Parent=Physo137754;rank=4 scaffold_57 . exon 121186 121290 . + . ID=Physo137754.4;Parent=Physo137754;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_57 . CDS 121844 122986 . + 0 ID=Physo137754;Parent=Physo137754;rank=5 scaffold_57 . exon 121844 122986 . + . ID=Physo137754.5;Parent=Physo137754;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_57 . CDS 123035 123250 . + 0 ID=Physo137754;Parent=Physo137754;rank=6 scaffold_57 . exon 123035 123250 . + . ID=Physo137754.6;Parent=Physo137754;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_57 . CDS 123344 124337 . + 0 ID=Physo137754;Parent=Physo137754;rank=7 scaffold_57 . exon 123344 124337 . + . ID=Physo137754.7;Parent=Physo137754;constitutive=1;ensembl_phase=2;rank=7 scaffold_57 . CDS 124383 124552 . + 0 ID=Physo137754;Parent=Physo137754;rank=8 scaffold_57 . exon 124383 124552 . + . ID=Physo137754.8;Parent=Physo137754;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_57 . CDS 124743 125119 . + 0 ID=Physo137754;Parent=Physo137754;rank=9 scaffold_57 . exon 124743 125119 . + . ID=Physo137754.9;Parent=Physo137754;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_57 . CDS 125349 125988 . + 0 ID=Physo137754;Parent=Physo137754;rank=10 scaffold_57 . exon 125349 125988 . + . ID=Physo137754.10;Parent=Physo137754;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_57 . CDS 126186 126819 . + 0 ID=Physo137754;Parent=Physo137754;rank=11 scaffold_57 . exon 126186 126819 . + . ID=Physo137754.11;Parent=Physo137754;constitutive=1;ensembl_phase=2;rank=11 scaffold_57 . CDS 127218 127575 . + 0 ID=Physo137754;Parent=Physo137754;rank=12 scaffold_57 . exon 127218 127575 . + . ID=Physo137754.12;Parent=Physo137754;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_57 . CDS 127624 127961 . + 0 ID=Physo137754;Parent=Physo137754;rank=13 scaffold_57 . exon 127624 127961 . + . ID=Physo137754.13;Parent=Physo137754;constitutive=1;ensembl_phase=1;rank=13 scaffold_57 . CDS 128009 128528 . + 0 ID=Physo137754;Parent=Physo137754;rank=14 scaffold_57 . exon 128009 128528 . + . ID=Physo137754.14;Parent=Physo137754;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_57 . CDS 128561 129180 . + 0 ID=Physo137754;Parent=Physo137754;rank=15 scaffold_57 . CDS 129423 129967 . + 0 ID=Physo137754;Parent=Physo137754;rank=16 scaffold_57 . CDS 130368 131028 . + 0 ID=Physo137754;Parent=Physo137754;rank=17 scaffold_57 . repeat_region 135615 136070 . + . description=GypsyPi-1c_I-int scaffold_57 . repeat_region 136340 136868 . + . description=GypsyPi-1c_I-int scaffold_57 . repeat_region 137468 140421 . + . description=GypsyPi-1c_I-int scaffold_57 . exon 128561 129180 . + . ID=Physo137754.15;Parent=Physo137754;constitutive=1;ensembl_phase=1;rank=15 scaffold_57 . exon 129423 129967 . + . ID=Physo137754.16;Parent=Physo137754;constitutive=1;ensembl_end_phase=2;rank=16 scaffold_57 . exon 130368 131028 . + . ID=Physo137754.17;Parent=Physo137754;constitutive=1;ensembl_phase=2;rank=17 scaffold_57 ensembl protein_coding_gene 135366 141019 . + . ID=Physo137755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570020;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 135366 141019 . + . ID=Physo137755;Parent=Physo137755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 135366 135557 . + 0 ID=Physo137755;Parent=Physo137755;rank=1 scaffold_57 . exon 135366 135557 . + . ID=Physo137755.1;Parent=Physo137755;constitutive=1;rank=1 scaffold_57 . CDS 135628 136071 . + 0 ID=Physo137755;Parent=Physo137755;rank=2 scaffold_57 . exon 135628 136071 . + . ID=Physo137755.2;Parent=Physo137755;constitutive=1;rank=2 scaffold_57 . CDS 136143 136328 . + 0 ID=Physo137755;Parent=Physo137755;rank=3 scaffold_57 . exon 136143 136328 . + . ID=Physo137755.3;Parent=Physo137755;constitutive=1;rank=3 scaffold_57 . CDS 136616 139378 . + 0 ID=Physo137755;Parent=Physo137755;rank=4 scaffold_57 . exon 136616 139378 . + . ID=Physo137755.4;Parent=Physo137755;constitutive=1;rank=4 scaffold_57 . CDS 139412 140024 . + 0 ID=Physo137755;Parent=Physo137755;rank=5 scaffold_57 . CDS 140267 140448 . + 0 ID=Physo137755;Parent=Physo137755;rank=6 scaffold_57 . CDS 140672 141019 . + 0 ID=Physo137755;Parent=Physo137755;rank=7 scaffold_57 . biological_region 139856 139862 0.999 + . logic_name=eponine scaffold_57 . biological_region 141923 141930 0.999 + . logic_name=eponine scaffold_57 . biological_region 142142 142147 0.999 - . logic_name=eponine scaffold_57 . biological_region 143379 143382 0.999 - . logic_name=eponine scaffold_57 . repeat_region 144022 144029 . ? . description=dust scaffold_57 . exon 139412 140024 . + . ID=Physo137755.5;Parent=Physo137755;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_57 . exon 140267 140448 . + . ID=Physo137755.6;Parent=Physo137755;constitutive=1;ensembl_phase=1;rank=6 scaffold_57 . exon 140672 141019 . + . ID=Physo137755.7;Parent=Physo137755;constitutive=1;rank=7 scaffold_57 . repeat_region 155716 155770 . ? . description=trf scaffold_57 ensembl protein_coding_gene 153140 154156 . - . ID=Physo137756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570021;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 153140 154156 . - . ID=Physo137756;Parent=Physo137756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 153140 154156 . - 0 ID=Physo137756;Parent=Physo137756;rank=1 scaffold_57 . exon 153140 154156 . - . ID=Physo137756.1;Parent=Physo137756;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 156437 160981 . + . ID=Physo137758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570023;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 156437 160981 . + . ID=Physo137758;Parent=Physo137758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 156437 160981 . + 0 ID=Physo137758;Parent=Physo137758;rank=1 scaffold_57 . exon 156437 160981 . + . ID=Physo137758.1;Parent=Physo137758;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 155177 156300 . + . ID=Physo157678;biotype=protein_coding;external_name=C_scaffold_57000002;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 155177 156300 . + . ID=Physo157678;Parent=Physo157678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 155177 155217 . + 0 ID=Physo157678;Parent=Physo157678;rank=1 scaffold_57 . exon 155177 155217 . + . ID=Physo157678.1;Parent=Physo157678;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 155291 155373 . + 0 ID=Physo157678;Parent=Physo157678;rank=2 scaffold_57 . exon 155291 155373 . + . ID=Physo157678.2;Parent=Physo157678;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 155461 155615 . + 0 ID=Physo157678;Parent=Physo157678;rank=3 scaffold_57 . exon 155461 155615 . + . ID=Physo157678.3;Parent=Physo157678;constitutive=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 155687 155796 . + 0 ID=Physo157678;Parent=Physo157678;rank=4 scaffold_57 . exon 155687 155796 . + . ID=Physo157678.4;Parent=Physo157678;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_57 . CDS 155871 155962 . + 0 ID=Physo157678;Parent=Physo157678;rank=5 scaffold_57 . exon 155871 155962 . + . ID=Physo157678.5;Parent=Physo157678;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_57 . CDS 156029 156300 . + 0 ID=Physo157678;Parent=Physo157678;rank=6 scaffold_57 . exon 156029 156300 . + . ID=Physo157678.6;Parent=Physo157678;constitutive=1;ensembl_phase=1;rank=6 scaffold_57 . biological_region 163693 163699 0.999 + . logic_name=eponine scaffold_57 . biological_region 163704 163706 0.999 - . logic_name=eponine scaffold_57 . biological_region 163847 163850 0.999 - . logic_name=eponine scaffold_57 . biological_region 163901 163906 0.999 + . logic_name=eponine scaffold_57 . biological_region 163985 163988 0.999 - . logic_name=eponine scaffold_57 . biological_region 164040 164040 0.999 - . logic_name=eponine scaffold_57 . biological_region 164107 164110 0.999 - . logic_name=eponine scaffold_57 ensembl protein_coding_gene 163492 168131 . + . ID=Physo137759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570024;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 163492 168131 . + . ID=Physo137759;Parent=Physo137759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 163492 167253 . + 0 ID=Physo137759;Parent=Physo137759;rank=1 scaffold_57 . exon 163492 167253 . + . ID=Physo137759.1;Parent=Physo137759;constitutive=1;rank=1 scaffold_57 . CDS 167330 167806 . + 0 ID=Physo137759;Parent=Physo137759;rank=2 scaffold_57 . exon 167330 167806 . + . ID=Physo137759.2;Parent=Physo137759;constitutive=1;rank=2 scaffold_57 . CDS 167885 168085 . + 0 ID=Physo137759;Parent=Physo137759;rank=3 scaffold_57 . exon 167885 168085 . + . ID=Physo137759.3;Parent=Physo137759;constitutive=1;rank=3 scaffold_57 . CDS 168123 168131 . + 0 ID=Physo137759;Parent=Physo137759;rank=4 scaffold_57 . repeat_region 170951 170958 . ? . description=dust scaffold_57 . repeat_region 174220 174314 . + . description=(CTG)n scaffold_57 . repeat_region 174269 174293 . ? . description=dust scaffold_57 . repeat_region 174269 174293 . ? . description=trf scaffold_57 . repeat_region 174816 174874 . ? . description=dust scaffold_57 . repeat_region 174972 175027 . ? . description=dust scaffold_57 . repeat_region 174990 175026 . ? . description=trf scaffold_57 . repeat_region 177274 177319 . ? . description=trf scaffold_57 . exon 168123 168131 . + . ID=Physo137759.4;Parent=Physo137759;constitutive=1;rank=4 scaffold_57 ensembl protein_coding_gene 171285 172315 . + . ID=Physo137760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570025;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 171285 172315 . + . ID=Physo137760;Parent=Physo137760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 171285 171770 . + 0 ID=Physo137760;Parent=Physo137760;rank=1 scaffold_57 . exon 171285 171770 . + . ID=Physo137760.1;Parent=Physo137760;constitutive=1;rank=1 scaffold_57 . CDS 171849 172046 . + 0 ID=Physo137760;Parent=Physo137760;rank=2 scaffold_57 . exon 171849 172046 . + . ID=Physo137760.2;Parent=Physo137760;constitutive=1;rank=2 scaffold_57 . CDS 172202 172315 . + 0 ID=Physo137760;Parent=Physo137760;rank=3 scaffold_57 . exon 172202 172315 . + . ID=Physo137760.3;Parent=Physo137760;constitutive=1;rank=3 scaffold_57 ensembl protein_coding_gene 172543 175066 . - . ID=Physo137761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570026;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 172543 175066 . - . ID=Physo137761;Parent=Physo137761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 172543 172612 . - 0 ID=Physo137761;Parent=Physo137761;rank=5 scaffold_57 . exon 172543 172612 . - . ID=Physo137761.5;Parent=Physo137761;constitutive=1;ensembl_phase=2;rank=5 scaffold_57 . CDS 172686 172856 . - 0 ID=Physo137761;Parent=Physo137761;rank=4 scaffold_57 . exon 172686 172856 . - . ID=Physo137761.4;Parent=Physo137761;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_57 . CDS 172933 173187 . - 0 ID=Physo137761;Parent=Physo137761;rank=3 scaffold_57 . exon 172933 173187 . - . ID=Physo137761.3;Parent=Physo137761;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_57 . CDS 173371 173489 . - 0 ID=Physo137761;Parent=Physo137761;rank=2 scaffold_57 . exon 173371 173489 . - . ID=Physo137761.2;Parent=Physo137761;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_57 . CDS 173564 175066 . - 0 ID=Physo137761;Parent=Physo137761;rank=1 scaffold_57 . exon 173564 175066 . - . ID=Physo137761.1;Parent=Physo137761;constitutive=1;rank=1 scaffold_57 . biological_region 180860 180866 0.999 + . logic_name=eponine scaffold_57 . biological_region 180903 180906 0.999 + . logic_name=eponine scaffold_57 . biological_region 180912 180914 0.999 - . logic_name=eponine scaffold_57 . biological_region 180951 180957 0.999 - . logic_name=eponine scaffold_57 . biological_region 180965 180971 0.999 + . logic_name=eponine scaffold_57 . biological_region 180977 180981 0.999 - . logic_name=eponine scaffold_57 . biological_region 181003 181005 0.999 - . logic_name=eponine scaffold_57 . biological_region 181033 181035 0.999 - . logic_name=eponine scaffold_57 . repeat_region 182767 184576 . + . description=Polinton-1_PI scaffold_57 . repeat_region 185104 187862 . + . description=Polinton-1_PI scaffold_57 ensembl protein_coding_gene 179898 181076 . - . ID=Physo137762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570027;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 179898 181076 . - . ID=Physo137762;Parent=Physo137762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 179898 180444 . - 0 ID=Physo137762;Parent=Physo137762;rank=3 scaffold_57 . exon 179898 180444 . - . ID=Physo137762.3;Parent=Physo137762;constitutive=1;ensembl_phase=2;rank=3 scaffold_57 . CDS 180518 180756 . - 0 ID=Physo137762;Parent=Physo137762;rank=2 scaffold_57 . exon 180518 180756 . - . ID=Physo137762.2;Parent=Physo137762;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_57 . CDS 180846 181076 . - 0 ID=Physo137762;Parent=Physo137762;rank=1 scaffold_57 . exon 180846 181076 . - . ID=Physo137762.1;Parent=Physo137762;constitutive=1;rank=1 scaffold_57 . repeat_region 192529 192577 . ? . description=trf scaffold_57 . repeat_region 194231 194264 . ? . description=dust scaffold_57 . repeat_region 194231 194264 . ? . description=trf scaffold_57 . repeat_region 194616 194662 . ? . description=dust scaffold_57 ensembl protein_coding_gene 187837 188163 . + . ID=Physo137763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570028;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 187837 188163 . + . ID=Physo137763;Parent=Physo137763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 187837 188163 . + 0 ID=Physo137763;Parent=Physo137763;rank=1 scaffold_57 . exon 187837 188163 . + . ID=Physo137763.1;Parent=Physo137763;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 190555 192749 . - . ID=Physo137766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570031;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 190555 192749 . - . ID=Physo137766;Parent=Physo137766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 190555 190696 . - 0 ID=Physo137766;Parent=Physo137766;rank=6 scaffold_57 . exon 190555 190696 . - . ID=Physo137766.6;Parent=Physo137766;constitutive=1;ensembl_phase=2;rank=6 scaffold_57 . CDS 190772 190905 . - 0 ID=Physo137766;Parent=Physo137766;rank=5 scaffold_57 . exon 190772 190905 . - . ID=Physo137766.5;Parent=Physo137766;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_57 . CDS 190977 191303 . - 0 ID=Physo137766;Parent=Physo137766;rank=4 scaffold_57 . exon 190977 191303 . - . ID=Physo137766.4;Parent=Physo137766;constitutive=1;rank=4 scaffold_57 . CDS 191485 192360 . - 0 ID=Physo137766;Parent=Physo137766;rank=3 scaffold_57 . exon 191485 192360 . - . ID=Physo137766.3;Parent=Physo137766;constitutive=1;rank=3 scaffold_57 . CDS 192424 192603 . - 0 ID=Physo137766;Parent=Physo137766;rank=2 scaffold_57 . exon 192424 192603 . - . ID=Physo137766.2;Parent=Physo137766;constitutive=1;rank=2 scaffold_57 . CDS 192657 192749 . - 0 ID=Physo137766;Parent=Physo137766;rank=1 scaffold_57 . exon 192657 192749 . - . ID=Physo137766.1;Parent=Physo137766;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 192915 194279 . + . ID=Physo137767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570032;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 192915 194279 . + . ID=Physo137767;Parent=Physo137767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 192915 194279 . + 0 ID=Physo137767;Parent=Physo137767;rank=1 scaffold_57 . exon 192915 194279 . + . ID=Physo137767.1;Parent=Physo137767;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 188274 189185 . - . ID=Physo157683;biotype=protein_coding;external_name=C_scaffold_57000007;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 188274 189185 . - . ID=Physo157683;Parent=Physo157683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 188274 188744 . - 0 ID=Physo157683;Parent=Physo157683;rank=3 scaffold_57 . exon 188274 188744 . - . ID=Physo157683.3;Parent=Physo157683;constitutive=1;rank=3 scaffold_57 . CDS 188815 188992 . - 0 ID=Physo157683;Parent=Physo157683;rank=2 scaffold_57 . exon 188815 188992 . - . ID=Physo157683.2;Parent=Physo157683;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 189085 189185 . - 0 ID=Physo157683;Parent=Physo157683;rank=1 scaffold_57 . exon 189085 189185 . - . ID=Physo157683.1;Parent=Physo157683;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 ensembl protein_coding_gene 189570 190237 . + . ID=Physo157685;biotype=protein_coding;external_name=C_scaffold_57000009;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 189570 190237 . + . ID=Physo157685;Parent=Physo157685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 189570 190207 . + 0 ID=Physo157685;Parent=Physo157685;rank=1 scaffold_57 . exon 189570 190207 . + . ID=Physo157685.1;Parent=Physo157685;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 190234 190237 . + 0 ID=Physo157685;Parent=Physo157685;rank=2 scaffold_57 . exon 190234 190237 . + . ID=Physo157685.2;Parent=Physo157685;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 ensembl protein_coding_gene 194673 197032 . + . ID=Physo157690;biotype=protein_coding;external_name=C_scaffold_57000014;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 194673 197032 . + . ID=Physo157690;Parent=Physo157690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 194673 194895 . + 0 ID=Physo157690;Parent=Physo157690;rank=1 scaffold_57 . exon 194673 194895 . + . ID=Physo157690.1;Parent=Physo157690;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 194923 195039 . + 0 ID=Physo157690;Parent=Physo157690;rank=2 scaffold_57 . exon 194923 195039 . + . ID=Physo157690.2;Parent=Physo157690;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 195162 195261 . + 0 ID=Physo157690;Parent=Physo157690;rank=3 scaffold_57 . exon 195162 195261 . + . ID=Physo157690.3;Parent=Physo157690;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_57 . CDS 195316 196210 . + 0 ID=Physo157690;Parent=Physo157690;rank=4 scaffold_57 . exon 195316 196210 . + . ID=Physo157690.4;Parent=Physo157690;constitutive=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 196298 196318 . + 0 ID=Physo157690;Parent=Physo157690;rank=5 scaffold_57 . exon 196298 196318 . + . ID=Physo157690.5;Parent=Physo157690;constitutive=1;rank=5 scaffold_57 . CDS 196396 196749 . + 0 ID=Physo157690;Parent=Physo157690;rank=6 scaffold_57 . exon 196396 196749 . + . ID=Physo157690.6;Parent=Physo157690;constitutive=1;rank=6 scaffold_57 . CDS 196817 197032 . + 0 ID=Physo157690;Parent=Physo157690;rank=7 scaffold_57 . exon 196817 197032 . + . ID=Physo157690.7;Parent=Physo157690;constitutive=1;rank=7 scaffold_57 ensembl protein_coding_gene 197343 198954 . - . ID=Physo157691;biotype=protein_coding;external_name=C_scaffold_57000015;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 197343 198954 . - . ID=Physo157691;Parent=Physo157691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 197343 197698 . - 0 ID=Physo157691;Parent=Physo157691;rank=7 scaffold_57 . exon 197343 197698 . - . ID=Physo157691.7;Parent=Physo157691;constitutive=1;ensembl_phase=1;rank=7 scaffold_57 . CDS 197863 197974 . - 0 ID=Physo157691;Parent=Physo157691;rank=6 scaffold_57 . CDS 198041 198238 . - 0 ID=Physo157691;Parent=Physo157691;rank=5 scaffold_57 . CDS 198335 198385 . - 0 ID=Physo157691;Parent=Physo157691;rank=4 scaffold_57 . CDS 198475 198643 . - 0 ID=Physo157691;Parent=Physo157691;rank=3 scaffold_57 . CDS 198777 198840 . - 0 ID=Physo157691;Parent=Physo157691;rank=2 scaffold_57 . CDS 198909 198954 . - 0 ID=Physo157691;Parent=Physo157691;rank=1 scaffold_57 . biological_region 199266 199268 0.999 + . logic_name=eponine scaffold_57 . biological_region 199375 199379 0.999 + . logic_name=eponine scaffold_57 . biological_region 199562 199562 0.999 - . logic_name=eponine scaffold_57 . biological_region 200057 200058 0.999 - . logic_name=eponine scaffold_57 . biological_region 200343 200347 0.999 + . logic_name=eponine scaffold_57 . biological_region 203808 203812 0.999 - . logic_name=eponine scaffold_57 . biological_region 204084 204087 0.999 - . logic_name=eponine scaffold_57 . biological_region 204108 204109 0.999 + . logic_name=eponine scaffold_57 . biological_region 204123 204125 0.999 + . logic_name=eponine scaffold_57 . biological_region 204158 204164 0.999 - . logic_name=eponine scaffold_57 . biological_region 206238 206243 0.999 - . logic_name=eponine scaffold_57 . biological_region 206501 206505 0.999 - . logic_name=eponine scaffold_57 . biological_region 206581 206582 0.999 - . logic_name=eponine scaffold_57 . biological_region 206588 206590 0.999 - . logic_name=eponine scaffold_57 . biological_region 206592 206594 0.999 + . logic_name=eponine scaffold_57 . biological_region 206641 206644 0.999 + . logic_name=eponine scaffold_57 . biological_region 206734 206735 0.999 + . logic_name=eponine scaffold_57 ensembl protein_coding_gene 201814 202651 . - . ID=Physo118830;biotype=protein_coding;external_name=estExt_Genewise1.C_570062;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 201814 202651 . - . ID=Physo118830;Parent=Physo118830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 201814 202003 . - 0 ID=Physo118830;Parent=Physo118830;rank=5 scaffold_57 . exon 201814 202003 . - . ID=Physo118830.5;Parent=Physo118830;constitutive=1;ensembl_phase=2;rank=5 scaffold_57 . CDS 202086 202123 . - 0 ID=Physo118830;Parent=Physo118830;rank=4 scaffold_57 . exon 202086 202123 . - . ID=Physo118830.4;Parent=Physo118830;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_57 . CDS 202188 202307 . - 0 ID=Physo118830;Parent=Physo118830;rank=3 scaffold_57 . exon 202188 202307 . - . ID=Physo118830.3;Parent=Physo118830;constitutive=1;rank=3 scaffold_57 . CDS 202395 202511 . - 0 ID=Physo118830;Parent=Physo118830;rank=2 scaffold_57 . exon 202395 202511 . - . ID=Physo118830.2;Parent=Physo118830;constitutive=1;rank=2 scaffold_57 . CDS 202577 202582 . - 0 ID=Physo118830;Parent=Physo118830;rank=1 scaffold_57 . exon 202577 202651 . - . ID=Physo118830.1;Parent=Physo118830;constitutive=1;ensembl_phase=-1;rank=1 scaffold_57 ensembl protein_coding_gene 199692 201569 . + . ID=Physo137770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570035;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 199692 201569 . + . ID=Physo137770;Parent=Physo137770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 199692 201569 . + 0 ID=Physo137770;Parent=Physo137770;rank=1 scaffold_57 . exon 199692 201569 . + . ID=Physo137770.1;Parent=Physo137770;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 203104 204231 . + . ID=Physo137772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570037;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 203104 204231 . + . ID=Physo137772;Parent=Physo137772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 203104 204231 . + 0 ID=Physo137772;Parent=Physo137772;rank=1 scaffold_57 . exon 203104 204231 . + . ID=Physo137772.1;Parent=Physo137772;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 204328 205748 . - . ID=Physo137773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570038;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 204328 205748 . - . ID=Physo137773;Parent=Physo137773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 204328 204614 . - 0 ID=Physo137773;Parent=Physo137773;rank=6 scaffold_57 . exon 204328 204614 . - . ID=Physo137773.6;Parent=Physo137773;constitutive=1;ensembl_phase=1;rank=6 scaffold_57 . CDS 204705 204770 . - 0 ID=Physo137773;Parent=Physo137773;rank=5 scaffold_57 . exon 204705 204770 . - . ID=Physo137773.5;Parent=Physo137773;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_57 . CDS 204839 205143 . - 0 ID=Physo137773;Parent=Physo137773;rank=4 scaffold_57 . exon 204839 205143 . - . ID=Physo137773.4;Parent=Physo137773;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 205224 205429 . - 0 ID=Physo137773;Parent=Physo137773;rank=3 scaffold_57 . exon 205224 205429 . - . ID=Physo137773.3;Parent=Physo137773;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_57 . CDS 205507 205599 . - 0 ID=Physo137773;Parent=Physo137773;rank=2 scaffold_57 . exon 205507 205599 . - . ID=Physo137773.2;Parent=Physo137773;constitutive=1;rank=2 scaffold_57 . CDS 205665 205748 . - 0 ID=Physo137773;Parent=Physo137773;rank=1 scaffold_57 . exon 205665 205748 . - . ID=Physo137773.1;Parent=Physo137773;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 206206 207043 . + . ID=Physo137774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570039;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 206206 207043 . + . ID=Physo137774;Parent=Physo137774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 206206 206931 . + 0 ID=Physo137774;Parent=Physo137774;rank=1 scaffold_57 . exon 206206 207043 . + . ID=Physo137774.1;Parent=Physo137774;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_57 . exon 197863 197974 . - . ID=Physo157691.6;Parent=Physo157691;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_57 . exon 198041 198238 . - . ID=Physo157691.5;Parent=Physo157691;constitutive=1;rank=5 scaffold_57 . exon 198335 198385 . - . ID=Physo157691.4;Parent=Physo157691;constitutive=1;rank=4 scaffold_57 . exon 198475 198643 . - . ID=Physo157691.3;Parent=Physo157691;constitutive=1;ensembl_phase=2;rank=3 scaffold_57 . exon 198777 198840 . - . ID=Physo157691.2;Parent=Physo157691;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_57 . exon 198909 198954 . - . ID=Physo157691.1;Parent=Physo157691;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . repeat_region 209110 209150 . ? . description=dust scaffold_57 . repeat_region 210454 210509 . ? . description=trf scaffold_57 . repeat_region 210509 210611 . ? . description=trf scaffold_57 ensembl protein_coding_gene 212475 219312 . + . ID=Physo157696;biotype=protein_coding;external_name=C_scaffold_57000020;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 212475 219312 . + . ID=Physo157696;Parent=Physo157696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 212475 212554 . + 0 ID=Physo157696;Parent=Physo157696;rank=1 scaffold_57 . exon 212475 212554 . + . ID=Physo157696.1;Parent=Physo157696;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 212636 212691 . + 0 ID=Physo157696;Parent=Physo157696;rank=2 scaffold_57 . exon 212636 212691 . + . ID=Physo157696.2;Parent=Physo157696;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 212763 212857 . + 0 ID=Physo157696;Parent=Physo157696;rank=3 scaffold_57 . exon 212763 212857 . + . ID=Physo157696.3;Parent=Physo157696;constitutive=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 212937 213776 . + 0 ID=Physo157696;Parent=Physo157696;rank=4 scaffold_57 . exon 212937 213776 . + . ID=Physo157696.4;Parent=Physo157696;constitutive=1;rank=4 scaffold_57 . CDS 213807 214058 . + 0 ID=Physo157696;Parent=Physo157696;rank=5 scaffold_57 . exon 213807 214058 . + . ID=Physo157696.5;Parent=Physo157696;constitutive=1;rank=5 scaffold_57 . CDS 214089 214449 . + 0 ID=Physo157696;Parent=Physo157696;rank=6 scaffold_57 . exon 214089 214449 . + . ID=Physo157696.6;Parent=Physo157696;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_57 . CDS 214480 214829 . + 0 ID=Physo157696;Parent=Physo157696;rank=7 scaffold_57 . exon 214480 214829 . + . ID=Physo157696.7;Parent=Physo157696;constitutive=1;ensembl_phase=1;rank=7 scaffold_57 . CDS 214896 215316 . + 0 ID=Physo157696;Parent=Physo157696;rank=8 scaffold_57 . exon 214896 215316 . + . ID=Physo157696.8;Parent=Physo157696;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_57 . CDS 215362 216921 . + 0 ID=Physo157696;Parent=Physo157696;rank=9 scaffold_57 . exon 215362 216921 . + . ID=Physo157696.9;Parent=Physo157696;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_57 . CDS 216967 217395 . + 0 ID=Physo157696;Parent=Physo157696;rank=10 scaffold_57 . exon 216967 217395 . + . ID=Physo157696.10;Parent=Physo157696;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_57 . CDS 217429 217650 . + 0 ID=Physo157696;Parent=Physo157696;rank=11 scaffold_57 . CDS 217696 217888 . + 0 ID=Physo157696;Parent=Physo157696;rank=12 scaffold_57 . CDS 217970 218094 . + 0 ID=Physo157696;Parent=Physo157696;rank=13 scaffold_57 . CDS 218318 219312 . + 0 ID=Physo157696;Parent=Physo157696;rank=14 scaffold_57 . biological_region 217391 217396 0.999 + . logic_name=eponine scaffold_57 . biological_region 218097 218097 0.999 - . logic_name=eponine scaffold_57 . biological_region 219554 219558 0.999 + . logic_name=eponine scaffold_57 . biological_region 222202 222205 0.999 + . logic_name=eponine scaffold_57 . biological_region 222232 222237 0.999 - . logic_name=eponine scaffold_57 . biological_region 222479 222479 0.999 + . logic_name=eponine scaffold_57 ensembl protein_coding_gene 219344 221824 . - . ID=Physo137777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570042;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 219344 221824 . - . ID=Physo137777;Parent=Physo137777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . exon 219344 219682 . - . ID=Physo137777.10;Parent=Physo137777;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=10 scaffold_57 . CDS 219553 219682 . - 0 ID=Physo137777;Parent=Physo137777;rank=10 scaffold_57 . CDS 219762 219886 . - 0 ID=Physo137777;Parent=Physo137777;rank=9 scaffold_57 . exon 219762 219886 . - . ID=Physo137777.9;Parent=Physo137777;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_57 . CDS 219974 220102 . - 0 ID=Physo137777;Parent=Physo137777;rank=8 scaffold_57 . exon 219974 220102 . - . ID=Physo137777.8;Parent=Physo137777;constitutive=1;rank=8 scaffold_57 . CDS 220442 220702 . - 0 ID=Physo137777;Parent=Physo137777;rank=7 scaffold_57 . exon 220442 220702 . - . ID=Physo137777.7;Parent=Physo137777;constitutive=1;rank=7 scaffold_57 . CDS 220774 220977 . - 0 ID=Physo137777;Parent=Physo137777;rank=6 scaffold_57 . exon 220774 220977 . - . ID=Physo137777.6;Parent=Physo137777;constitutive=1;rank=6 scaffold_57 . CDS 221047 221249 . - 0 ID=Physo137777;Parent=Physo137777;rank=5 scaffold_57 . exon 221047 221249 . - . ID=Physo137777.5;Parent=Physo137777;constitutive=1;ensembl_phase=1;rank=5 scaffold_57 . CDS 221319 221467 . - 0 ID=Physo137777;Parent=Physo137777;rank=4 scaffold_57 . exon 221319 221467 . - . ID=Physo137777.4;Parent=Physo137777;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 221539 221619 . - 0 ID=Physo137777;Parent=Physo137777;rank=3 scaffold_57 . exon 221539 221619 . - . ID=Physo137777.3;Parent=Physo137777;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_57 . CDS 221682 221740 . - 0 ID=Physo137777;Parent=Physo137777;rank=2 scaffold_57 . exon 221682 221740 . - . ID=Physo137777.2;Parent=Physo137777;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_57 . CDS 221813 221824 . - 0 ID=Physo137777;Parent=Physo137777;rank=1 scaffold_57 . exon 221813 221824 . - . ID=Physo137777.1;Parent=Physo137777;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 222092 229695 . + . ID=Physo137778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570043;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 222092 229695 . + . ID=Physo137778;Parent=Physo137778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 222092 222735 . + 0 ID=Physo137778;Parent=Physo137778;rank=1 scaffold_57 . exon 222092 222735 . + . ID=Physo137778.1;Parent=Physo137778;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 222859 223238 . + 0 ID=Physo137778;Parent=Physo137778;rank=2 scaffold_57 . exon 222859 223238 . + . ID=Physo137778.2;Parent=Physo137778;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 223325 223431 . + 0 ID=Physo137778;Parent=Physo137778;rank=3 scaffold_57 . exon 223325 223431 . + . ID=Physo137778.3;Parent=Physo137778;constitutive=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 223522 223715 . + 0 ID=Physo137778;Parent=Physo137778;rank=4 scaffold_57 . exon 223522 223715 . + . ID=Physo137778.4;Parent=Physo137778;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_57 . CDS 223797 223926 . + 0 ID=Physo137778;Parent=Physo137778;rank=5 scaffold_57 . exon 223797 223926 . + . ID=Physo137778.5;Parent=Physo137778;constitutive=1;ensembl_phase=2;rank=5 scaffold_57 . CDS 224012 224107 . + 0 ID=Physo137778;Parent=Physo137778;rank=6 scaffold_57 . exon 224012 224107 . + . ID=Physo137778.6;Parent=Physo137778;constitutive=1;rank=6 scaffold_57 . CDS 224180 224284 . + 0 ID=Physo137778;Parent=Physo137778;rank=7 scaffold_57 . exon 224180 224284 . + . ID=Physo137778.7;Parent=Physo137778;constitutive=1;rank=7 scaffold_57 . CDS 224367 224480 . + 0 ID=Physo137778;Parent=Physo137778;rank=8 scaffold_57 . exon 224367 224480 . + . ID=Physo137778.8;Parent=Physo137778;constitutive=1;rank=8 scaffold_57 . CDS 224633 224739 . + 0 ID=Physo137778;Parent=Physo137778;rank=9 scaffold_57 . exon 224633 224739 . + . ID=Physo137778.9;Parent=Physo137778;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_57 . CDS 224957 225090 . + 0 ID=Physo137778;Parent=Physo137778;rank=10 scaffold_57 . exon 224957 225090 . + . ID=Physo137778.10;Parent=Physo137778;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_57 . CDS 225170 225300 . + 0 ID=Physo137778;Parent=Physo137778;rank=11 scaffold_57 . exon 225170 225300 . + . ID=Physo137778.11;Parent=Physo137778;constitutive=1;ensembl_phase=1;rank=11 scaffold_57 . CDS 225373 226595 . + 0 ID=Physo137778;Parent=Physo137778;rank=12 scaffold_57 . exon 225373 226595 . + . ID=Physo137778.12;Parent=Physo137778;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_57 . CDS 226674 229459 . + 0 ID=Physo137778;Parent=Physo137778;rank=13 scaffold_57 . exon 226674 229459 . + . ID=Physo137778.13;Parent=Physo137778;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_57 . CDS 229535 229695 . + 0 ID=Physo137778;Parent=Physo137778;rank=14 scaffold_57 . exon 217429 217650 . + . ID=Physo157696.11;Parent=Physo157696;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_57 . exon 217696 217888 . + . ID=Physo157696.12;Parent=Physo157696;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_57 . exon 217970 218094 . + . ID=Physo157696.13;Parent=Physo157696;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_57 . exon 218318 219312 . + . ID=Physo157696.14;Parent=Physo157696;constitutive=1;ensembl_phase=1;rank=14 scaffold_57 . repeat_region 229871 229893 . ? . description=dust scaffold_57 . repeat_region 234757 234905 . + . description=(CGA)n scaffold_57 . repeat_region 234790 234840 . ? . description=trf scaffold_57 . repeat_region 234881 234908 . ? . description=trf scaffold_57 . exon 229535 229695 . + . ID=Physo137778.14;Parent=Physo137778;constitutive=1;ensembl_phase=1;rank=14 scaffold_57 ensembl protein_coding_gene 229947 231819 . - . ID=Physo137779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570044;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 229947 231819 . - . ID=Physo137779;Parent=Physo137779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 229947 230006 . - 0 ID=Physo137779;Parent=Physo137779;rank=2 scaffold_57 . exon 229947 230006 . - . ID=Physo137779.2;Parent=Physo137779;constitutive=1;rank=2 scaffold_57 . CDS 230092 231819 . - 0 ID=Physo137779;Parent=Physo137779;rank=1 scaffold_57 . exon 230092 231819 . - . ID=Physo137779.1;Parent=Physo137779;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 232049 233067 . + . ID=Physo137780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570045;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 232049 233067 . + . ID=Physo137780;Parent=Physo137780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . exon 232049 232280 . + . ID=Physo137780.1;Parent=Physo137780;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_57 . CDS 232090 232280 . + 0 ID=Physo137780;Parent=Physo137780;rank=1 scaffold_57 . CDS 232372 232470 . + 0 ID=Physo137780;Parent=Physo137780;rank=2 scaffold_57 . exon 232372 232470 . + . ID=Physo137780.2;Parent=Physo137780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_57 . CDS 232556 232688 . + 0 ID=Physo137780;Parent=Physo137780;rank=3 scaffold_57 . exon 232556 232688 . + . ID=Physo137780.3;Parent=Physo137780;constitutive=1;ensembl_phase=2;rank=3 scaffold_57 . CDS 232757 232825 . + 0 ID=Physo137780;Parent=Physo137780;rank=4 scaffold_57 . exon 232757 232825 . + . ID=Physo137780.4;Parent=Physo137780;constitutive=1;rank=4 scaffold_57 . CDS 232900 233067 . + 0 ID=Physo137780;Parent=Physo137780;rank=5 scaffold_57 . exon 232900 233067 . + . ID=Physo137780.5;Parent=Physo137780;constitutive=1;rank=5 scaffold_57 ensembl protein_coding_gene 234694 235326 . + . ID=Physo137781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570046;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 234694 235326 . + . ID=Physo137781;Parent=Physo137781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 234694 235326 . + 0 ID=Physo137781;Parent=Physo137781;rank=1 scaffold_57 . exon 234694 235326 . + . ID=Physo137781.1;Parent=Physo137781;constitutive=1;rank=1 scaffold_57 . biological_region 238332 238334 0.999 - . logic_name=eponine scaffold_57 . biological_region 240246 240251 0.999 + . logic_name=eponine scaffold_57 . biological_region 240266 240267 0.999 + . logic_name=eponine scaffold_57 . biological_region 240332 240334 0.999 - . logic_name=eponine scaffold_57 . biological_region 240352 240354 0.999 + . logic_name=eponine scaffold_57 . repeat_region 240488 240636 . + . description=(TCG)n scaffold_57 . biological_region 240552 240554 0.999 + . logic_name=eponine scaffold_57 . biological_region 241971 241977 0.999 + . logic_name=eponine scaffold_57 ensembl protein_coding_gene 240049 240699 . - . ID=Physo137782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570047;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 240049 240699 . - . ID=Physo137782;Parent=Physo137782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 240049 240699 . - 0 ID=Physo137782;Parent=Physo137782;rank=1 scaffold_57 . exon 240049 240699 . - . ID=Physo137782.1;Parent=Physo137782;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 241947 242493 . + . ID=Physo137783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570048;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 241947 242493 . + . ID=Physo137783;Parent=Physo137783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 241947 242063 . + 0 ID=Physo137783;Parent=Physo137783;rank=1 scaffold_57 . exon 241947 242063 . + . ID=Physo137783.1;Parent=Physo137783;constitutive=1;rank=1 scaffold_57 . CDS 242089 242493 . + 0 ID=Physo137783;Parent=Physo137783;rank=2 scaffold_57 . exon 242089 242493 . + . ID=Physo137783.2;Parent=Physo137783;constitutive=1;rank=2 scaffold_57 . repeat_region 248187 248209 . ? . description=dust scaffold_57 . repeat_region 248187 248214 . ? . description=trf scaffold_57 ensembl protein_coding_gene 247805 248059 . + . ID=Physo118841;biotype=protein_coding;external_name=estExt_Genewise1.C_570073;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 247805 248059 . + . ID=Physo118841;Parent=Physo118841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . exon 247805 248059 . + . ID=Physo118841.1;Parent=Physo118841;constitutive=1;ensembl_phase=-1;rank=1 scaffold_57 . CDS 247844 248059 . + 0 ID=Physo118841;Parent=Physo118841;rank=1 scaffold_57 ensembl protein_coding_gene 256507 257956 . - . ID=Physo137787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570052;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 256507 257956 . - . ID=Physo137787;Parent=Physo137787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 256507 256839 . - 0 ID=Physo137787;Parent=Physo137787;rank=2 scaffold_57 . exon 256507 256839 . - . ID=Physo137787.2;Parent=Physo137787;constitutive=1;rank=2 scaffold_57 . CDS 256922 257956 . - 0 ID=Physo137787;Parent=Physo137787;rank=1 scaffold_57 ensembl protein_coding_gene 252725 256248 . + . ID=Physo157700;biotype=protein_coding;external_name=C_scaffold_57000024;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 252725 256248 . + . ID=Physo157700;Parent=Physo157700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 252725 253084 . + 0 ID=Physo157700;Parent=Physo157700;rank=1 scaffold_57 . exon 252725 253084 . + . ID=Physo157700.1;Parent=Physo157700;constitutive=1;rank=1 scaffold_57 . CDS 253211 253339 . + 0 ID=Physo157700;Parent=Physo157700;rank=2 scaffold_57 . exon 253211 253339 . + . ID=Physo157700.2;Parent=Physo157700;constitutive=1;rank=2 scaffold_57 . CDS 253487 253750 . + 0 ID=Physo157700;Parent=Physo157700;rank=3 scaffold_57 . exon 253487 253750 . + . ID=Physo157700.3;Parent=Physo157700;constitutive=1;rank=3 scaffold_57 . CDS 254100 254474 . + 0 ID=Physo157700;Parent=Physo157700;rank=4 scaffold_57 . exon 254100 254474 . + . ID=Physo157700.4;Parent=Physo157700;constitutive=1;rank=4 scaffold_57 . CDS 254499 254872 . + 0 ID=Physo157700;Parent=Physo157700;rank=5 scaffold_57 . exon 254499 254872 . + . ID=Physo157700.5;Parent=Physo157700;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_57 . CDS 255227 255640 . + 0 ID=Physo157700;Parent=Physo157700;rank=6 scaffold_57 . exon 255227 255640 . + . ID=Physo157700.6;Parent=Physo157700;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_57 . CDS 255715 255826 . + 0 ID=Physo157700;Parent=Physo157700;rank=7 scaffold_57 . exon 255715 255826 . + . ID=Physo157700.7;Parent=Physo157700;constitutive=1;ensembl_phase=2;rank=7 scaffold_57 . CDS 255899 256013 . + 0 ID=Physo157700;Parent=Physo157700;rank=8 scaffold_57 . exon 255899 256013 . + . ID=Physo157700.8;Parent=Physo157700;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_57 . CDS 256100 256248 . + 0 ID=Physo157700;Parent=Physo157700;rank=9 scaffold_57 . exon 256100 256248 . + . ID=Physo157700.9;Parent=Physo157700;constitutive=1;ensembl_phase=1;rank=9 scaffold_57 . biological_region 257745 257752 0.999 + . logic_name=eponine scaffold_57 . biological_region 257825 257832 0.999 + . logic_name=eponine scaffold_57 . biological_region 257870 257870 0.999 - . logic_name=eponine scaffold_57 . biological_region 257944 257948 0.999 - . logic_name=eponine scaffold_57 . biological_region 258277 258279 0.999 + . logic_name=eponine scaffold_57 . biological_region 258284 258286 0.999 - . logic_name=eponine scaffold_57 . biological_region 258337 258341 0.999 + . logic_name=eponine scaffold_57 . biological_region 262753 262754 0.999 + . logic_name=eponine scaffold_57 . biological_region 263203 263206 0.999 + . logic_name=eponine scaffold_57 . biological_region 263968 263971 0.999 - . logic_name=eponine scaffold_57 . biological_region 264022 264026 0.999 + . logic_name=eponine scaffold_57 . biological_region 264140 264141 0.999 + . logic_name=eponine scaffold_57 . biological_region 264161 264165 0.999 + . logic_name=eponine scaffold_57 . biological_region 264196 264199 0.999 + . logic_name=eponine scaffold_57 ensembl protein_coding_gene 262726 264381 . + . ID=Physo109072;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_570003;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 262726 264381 . + . ID=Physo109072;Parent=Physo109072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . exon 262726 264381 . + . ID=Physo109072.1;Parent=Physo109072;constitutive=1;ensembl_phase=-1;rank=1 scaffold_57 . CDS 262759 264381 . + 0 ID=Physo109072;Parent=Physo109072;rank=1 scaffold_57 . exon 256922 257956 . - . ID=Physo137787.1;Parent=Physo137787;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 264550 265032 . + . ID=Physo137789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570054;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 264550 265032 . + . ID=Physo137789;Parent=Physo137789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 264550 265032 . + 0 ID=Physo137789;Parent=Physo137789;rank=1 scaffold_57 . exon 264550 265032 . + . ID=Physo137789.1;Parent=Physo137789;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 265132 269881 . - . ID=Physo137790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570055;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 265132 269881 . - . ID=Physo137790;Parent=Physo137790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 265132 265707 . - 0 ID=Physo137790;Parent=Physo137790;rank=5 scaffold_57 . exon 265132 265707 . - . ID=Physo137790.5;Parent=Physo137790;constitutive=1;rank=5 scaffold_57 . CDS 265785 265938 . - 0 ID=Physo137790;Parent=Physo137790;rank=4 scaffold_57 . exon 265785 265938 . - . ID=Physo137790.4;Parent=Physo137790;constitutive=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 266122 266684 . - 0 ID=Physo137790;Parent=Physo137790;rank=3 scaffold_57 . exon 266122 266684 . - . ID=Physo137790.3;Parent=Physo137790;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_57 . CDS 266752 266845 . - 0 ID=Physo137790;Parent=Physo137790;rank=2 scaffold_57 . CDS 267378 269881 . - 0 ID=Physo137790;Parent=Physo137790;rank=1 scaffold_57 . repeat_region 267795 267895 . ? . description=trf scaffold_57 . repeat_region 269477 269545 . ? . description=dust scaffold_57 . repeat_region 269477 269546 . ? . description=trf scaffold_57 . repeat_region 269477 269546 . + . description=(CTG)n scaffold_57 . repeat_region 269706 269763 . ? . description=dust scaffold_57 . repeat_region 269961 269979 . ? . description=dust scaffold_57 . repeat_region 270587 270626 . ? . description=trf scaffold_57 . repeat_region 270593 270613 . ? . description=trf scaffold_57 ensembl protein_coding_gene 272387 274410 . - . ID=Physo109073;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_570004;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 272387 274410 . - . ID=Physo109073;Parent=Physo109073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 272387 274047 . - 0 ID=Physo109073;Parent=Physo109073;rank=2 scaffold_57 . exon 272387 274047 . - . ID=Physo109073.2;Parent=Physo109073;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 274377 274410 . - 0 ID=Physo109073;Parent=Physo109073;rank=1 scaffold_57 . exon 274377 274410 . - . ID=Physo109073.1;Parent=Physo109073;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . exon 266752 266845 . - . ID=Physo137790.2;Parent=Physo137790;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . exon 267378 269881 . - . ID=Physo137790.1;Parent=Physo137790;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 ensembl protein_coding_gene 274564 276574 . - . ID=Physo137792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570057;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 274564 276574 . - . ID=Physo137792;Parent=Physo137792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . exon 274564 276574 . - . ID=Physo137792.1;Parent=Physo137792;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_57 . CDS 274565 276574 . - 0 ID=Physo137792;Parent=Physo137792;rank=1 scaffold_57 . biological_region 277920 277924 0.999 + . logic_name=eponine scaffold_57 . biological_region 278187 278192 0.999 + . logic_name=eponine scaffold_57 . biological_region 278344 278346 0.999 + . logic_name=eponine scaffold_57 . biological_region 278363 278369 0.999 + . logic_name=eponine scaffold_57 . biological_region 278436 278441 0.999 - . logic_name=eponine scaffold_57 . biological_region 278490 278495 0.999 + . logic_name=eponine scaffold_57 . biological_region 278526 278527 0.999 + . logic_name=eponine scaffold_57 . biological_region 278557 278558 0.999 - . logic_name=eponine scaffold_57 . biological_region 278629 278632 0.999 - . logic_name=eponine scaffold_57 . biological_region 278671 278674 0.999 - . logic_name=eponine scaffold_57 . biological_region 278694 278702 0.999 - . logic_name=eponine scaffold_57 . biological_region 278847 278849 0.999 - . logic_name=eponine scaffold_57 . biological_region 278940 278943 0.999 + . logic_name=eponine scaffold_57 . biological_region 281133 281135 0.999 + . logic_name=eponine scaffold_57 . biological_region 281152 281156 0.999 + . logic_name=eponine scaffold_57 . biological_region 281176 281182 0.999 - . logic_name=eponine scaffold_57 . biological_region 281209 281213 0.999 - . logic_name=eponine scaffold_57 . biological_region 282454 282455 0.999 - . logic_name=eponine scaffold_57 . biological_region 283743 283746 0.999 + . logic_name=eponine scaffold_57 . biological_region 283797 283798 0.999 - . logic_name=eponine scaffold_57 . biological_region 283835 283839 0.999 + . logic_name=eponine scaffold_57 . biological_region 283851 283858 0.999 + . logic_name=eponine scaffold_57 . biological_region 283878 283883 0.999 - . logic_name=eponine scaffold_57 . biological_region 283918 283918 0.999 - . logic_name=eponine scaffold_57 . biological_region 283948 283951 0.999 - . logic_name=eponine scaffold_57 . biological_region 284254 284258 0.999 + . logic_name=eponine scaffold_57 . biological_region 284331 284337 0.999 - . logic_name=eponine scaffold_57 . biological_region 284389 284393 0.999 + . logic_name=eponine scaffold_57 . biological_region 284516 284518 0.999 - . logic_name=eponine scaffold_57 . biological_region 284539 284539 0.999 - . logic_name=eponine scaffold_57 . biological_region 284548 284551 0.999 - . logic_name=eponine scaffold_57 . biological_region 286404 286405 0.999 + . logic_name=eponine scaffold_57 . biological_region 286437 286437 0.999 + . logic_name=eponine scaffold_57 ensembl protein_coding_gene 276863 278689 . - . ID=Physo137793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570058;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 276863 278689 . - . ID=Physo137793;Parent=Physo137793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 276863 278689 . - 0 ID=Physo137793;Parent=Physo137793;rank=1 scaffold_57 . exon 276863 278689 . - . ID=Physo137793.1;Parent=Physo137793;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 281118 282626 . + . ID=Physo137794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570059;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 281118 282626 . + . ID=Physo137794;Parent=Physo137794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 281118 281166 . + 0 ID=Physo137794;Parent=Physo137794;rank=1 scaffold_57 . exon 281118 281166 . + . ID=Physo137794.1;Parent=Physo137794;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . CDS 281336 281414 . + 0 ID=Physo137794;Parent=Physo137794;rank=2 scaffold_57 . exon 281336 281414 . + . ID=Physo137794.2;Parent=Physo137794;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_57 . CDS 281495 282626 . + 0 ID=Physo137794;Parent=Physo137794;rank=3 scaffold_57 . exon 281495 282626 . + . ID=Physo137794.3;Parent=Physo137794;constitutive=1;ensembl_phase=2;rank=3 scaffold_57 ensembl protein_coding_gene 283604 290672 . - . ID=Physo137795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570060;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 283604 290672 . - . ID=Physo137795;Parent=Physo137795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 283604 284713 . - 0 ID=Physo137795;Parent=Physo137795;rank=5 scaffold_57 . exon 283604 284713 . - . ID=Physo137795.5;Parent=Physo137795;constitutive=1;rank=5 scaffold_57 . CDS 284846 285785 . - 0 ID=Physo137795;Parent=Physo137795;rank=4 scaffold_57 . exon 284846 285785 . - . ID=Physo137795.4;Parent=Physo137795;constitutive=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 285853 287757 . - 0 ID=Physo137795;Parent=Physo137795;rank=3 scaffold_57 . exon 285853 287757 . - . ID=Physo137795.3;Parent=Physo137795;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_57 . CDS 287860 288092 . - 0 ID=Physo137795;Parent=Physo137795;rank=2 scaffold_57 . CDS 288294 290672 . - 0 ID=Physo137795;Parent=Physo137795;rank=1 scaffold_57 . repeat_region 292142 292218 . ? . description=trf scaffold_57 . repeat_region 292198 292333 . ? . description=trf scaffold_57 . repeat_region 294377 294444 . ? . description=trf scaffold_57 . repeat_region 296200 296243 . ? . description=trf scaffold_57 . repeat_region 296204 296236 . ? . description=trf scaffold_57 . repeat_region 296204 296243 . ? . description=trf scaffold_57 . repeat_region 296212 296243 . ? . description=dust scaffold_57 . exon 287860 288092 . - . ID=Physo137795.2;Parent=Physo137795;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_57 . exon 288294 290672 . - . ID=Physo137795.1;Parent=Physo137795;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 290824 291679 . - . ID=Physo137796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570061;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 290824 291679 . - . ID=Physo137796;Parent=Physo137796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 290824 291378 . - 0 ID=Physo137796;Parent=Physo137796;rank=2 scaffold_57 . exon 290824 291378 . - . ID=Physo137796.2;Parent=Physo137796;constitutive=1;rank=2 scaffold_57 . CDS 291401 291679 . - 0 ID=Physo137796;Parent=Physo137796;rank=1 scaffold_57 . exon 291401 291679 . - . ID=Physo137796.1;Parent=Physo137796;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 293804 296212 . - . ID=Physo137797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570062;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 293804 296212 . - . ID=Physo137797;Parent=Physo137797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 293804 296212 . - 0 ID=Physo137797;Parent=Physo137797;rank=1 scaffold_57 . exon 293804 296212 . - . ID=Physo137797.1;Parent=Physo137797;constitutive=1;rank=1 scaffold_57 . biological_region 300076 300077 0.999 + . logic_name=eponine scaffold_57 . biological_region 300939 300939 0.999 - . logic_name=eponine scaffold_57 . repeat_region 301385 301486 . + . description=(CTG)n scaffold_57 . biological_region 301875 301880 0.999 + . logic_name=eponine scaffold_57 . biological_region 301930 301936 0.999 - . logic_name=eponine scaffold_57 . biological_region 301951 301953 0.999 + . logic_name=eponine scaffold_57 ensembl protein_coding_gene 299267 299700 . - . ID=Physo137798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570063;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 299267 299700 . - . ID=Physo137798;Parent=Physo137798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 299267 299277 . - 0 ID=Physo137798;Parent=Physo137798;rank=2 scaffold_57 . exon 299267 299277 . - . ID=Physo137798.2;Parent=Physo137798;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 299328 299700 . - 0 ID=Physo137798;Parent=Physo137798;rank=1 scaffold_57 . exon 299328 299700 . - . ID=Physo137798.1;Parent=Physo137798;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 301362 302273 . - . ID=Physo137799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570064;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 301362 302273 . - . ID=Physo137799;Parent=Physo137799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 301362 302224 . - 0 ID=Physo137799;Parent=Physo137799;rank=2 scaffold_57 . exon 301362 302224 . - . ID=Physo137799.2;Parent=Physo137799;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 302246 302273 . - 0 ID=Physo137799;Parent=Physo137799;rank=1 scaffold_57 . exon 302246 302273 . - . ID=Physo137799.1;Parent=Physo137799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 304418 305035 . - . ID=Physo137800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570065;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 304418 305035 . - . ID=Physo137800;Parent=Physo137800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 304418 304744 . - 0 ID=Physo137800;Parent=Physo137800;rank=3 scaffold_57 . exon 304418 304744 . - . ID=Physo137800.3;Parent=Physo137800;constitutive=1;rank=3 scaffold_57 . CDS 304776 304918 . - 0 ID=Physo137800;Parent=Physo137800;rank=2 scaffold_57 . exon 304776 304918 . - . ID=Physo137800.2;Parent=Physo137800;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . CDS 304945 305035 . - 0 ID=Physo137800;Parent=Physo137800;rank=1 scaffold_57 . exon 304945 305035 . - . ID=Physo137800.1;Parent=Physo137800;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 . repeat_region 311151 311159 . ? . description=dust scaffold_57 . repeat_region 311564 311575 . ? . description=dust scaffold_57 . repeat_region 311567 311617 . ? . description=trf scaffold_57 . repeat_region 312568 312596 . ? . description=dust scaffold_57 . repeat_region 312568 312596 . ? . description=trf scaffold_57 ensembl protein_coding_gene 312034 315219 . + . ID=Physo137801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570066;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 312034 315219 . + . ID=Physo137801;Parent=Physo137801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 312034 315219 . + 0 ID=Physo137801;Parent=Physo137801;rank=1 scaffold_57 . exon 312034 315219 . + . ID=Physo137801.1;Parent=Physo137801;constitutive=1;rank=1 scaffold_57 . biological_region 317887 317888 0.999 - . logic_name=eponine scaffold_57 . biological_region 317978 317979 0.999 - . logic_name=eponine scaffold_57 . biological_region 318134 318137 0.999 + . logic_name=eponine scaffold_57 . biological_region 318154 318155 0.999 + . logic_name=eponine scaffold_57 . biological_region 318188 318192 0.999 - . logic_name=eponine scaffold_57 . biological_region 320563 320565 0.999 + . logic_name=eponine scaffold_57 . biological_region 320608 320611 0.999 - . logic_name=eponine scaffold_57 . biological_region 320665 320668 0.999 + . logic_name=eponine scaffold_57 . biological_region 322773 322774 0.999 - . logic_name=eponine scaffold_57 . biological_region 323040 323041 0.999 + . logic_name=eponine scaffold_57 . biological_region 323074 323078 0.999 - . logic_name=eponine scaffold_57 . biological_region 324011 324015 0.999 - . logic_name=eponine scaffold_57 ensembl protein_coding_gene 316490 318352 . + . ID=Physo137802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570067;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 316490 318352 . + . ID=Physo137802;Parent=Physo137802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 316490 318352 . + 0 ID=Physo137802;Parent=Physo137802;rank=1 scaffold_57 . exon 316490 318352 . + . ID=Physo137802.1;Parent=Physo137802;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 321379 323238 . + . ID=Physo137803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570068;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 321379 323238 . + . ID=Physo137803;Parent=Physo137803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 321379 323238 . + 0 ID=Physo137803;Parent=Physo137803;rank=1 scaffold_57 . exon 321379 323238 . + . ID=Physo137803.1;Parent=Physo137803;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 323776 325816 . - . ID=Physo137804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570069;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 323776 325816 . - . ID=Physo137804;Parent=Physo137804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 323776 324180 . - 0 ID=Physo137804;Parent=Physo137804;rank=4 scaffold_57 . exon 323776 324180 . - . ID=Physo137804.4;Parent=Physo137804;constitutive=1;rank=4 scaffold_57 . CDS 324216 324806 . - 0 ID=Physo137804;Parent=Physo137804;rank=3 scaffold_57 . exon 324216 324806 . - . ID=Physo137804.3;Parent=Physo137804;constitutive=1;rank=3 scaffold_57 . CDS 324851 325187 . - 0 ID=Physo137804;Parent=Physo137804;rank=2 scaffold_57 . exon 324851 325187 . - . ID=Physo137804.2;Parent=Physo137804;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 325230 325816 . - 0 ID=Physo137804;Parent=Physo137804;rank=1 scaffold_57 . exon 325230 325816 . - . ID=Physo137804.1;Parent=Physo137804;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . repeat_region 329001 329008 . ? . description=dust scaffold_57 . repeat_region 330248 330293 . ? . description=trf scaffold_57 . repeat_region 334000 334012 . ? . description=dust scaffold_57 ensembl protein_coding_gene 330277 333864 . + . ID=Physo137805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570070;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 330277 333864 . + . ID=Physo137805;Parent=Physo137805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 330277 330456 . + 0 ID=Physo137805;Parent=Physo137805;rank=1 scaffold_57 . exon 330277 330456 . + . ID=Physo137805.1;Parent=Physo137805;constitutive=1;rank=1 scaffold_57 . CDS 330542 331460 . + 0 ID=Physo137805;Parent=Physo137805;rank=2 scaffold_57 . exon 330542 331460 . + . ID=Physo137805.2;Parent=Physo137805;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_57 . CDS 331535 332396 . + 0 ID=Physo137805;Parent=Physo137805;rank=3 scaffold_57 . exon 331535 332396 . + . ID=Physo137805.3;Parent=Physo137805;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_57 . CDS 332520 332653 . + 0 ID=Physo137805;Parent=Physo137805;rank=4 scaffold_57 . exon 332520 332653 . + . ID=Physo137805.4;Parent=Physo137805;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 332881 332997 . + 0 ID=Physo137805;Parent=Physo137805;rank=5 scaffold_57 . exon 332881 332997 . + . ID=Physo137805.5;Parent=Physo137805;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_57 . CDS 333248 333864 . + 0 ID=Physo137805;Parent=Physo137805;rank=6 scaffold_57 . exon 333248 333864 . + . ID=Physo137805.6;Parent=Physo137805;constitutive=1;ensembl_phase=1;rank=6 scaffold_57 ensembl protein_coding_gene 334757 342677 . - . ID=Physo137806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570071;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 334757 342677 . - . ID=Physo137806;Parent=Physo137806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 334757 336079 . - 0 ID=Physo137806;Parent=Physo137806;rank=11 scaffold_57 . exon 334757 336079 . - . ID=Physo137806.11;Parent=Physo137806;constitutive=1;rank=11 scaffold_57 . CDS 336154 336873 . - 0 ID=Physo137806;Parent=Physo137806;rank=10 scaffold_57 . CDS 336919 338433 . - 0 ID=Physo137806;Parent=Physo137806;rank=9 scaffold_57 . CDS 338467 338959 . - 0 ID=Physo137806;Parent=Physo137806;rank=8 scaffold_57 . CDS 339056 339133 . - 0 ID=Physo137806;Parent=Physo137806;rank=7 scaffold_57 . CDS 339295 340176 . - 0 ID=Physo137806;Parent=Physo137806;rank=6 scaffold_57 . CDS 340482 341042 . - 0 ID=Physo137806;Parent=Physo137806;rank=5 scaffold_57 . CDS 341097 341611 . - 0 ID=Physo137806;Parent=Physo137806;rank=4 scaffold_57 . CDS 341693 341890 . - 0 ID=Physo137806;Parent=Physo137806;rank=3 scaffold_57 . CDS 342166 342276 . - 0 ID=Physo137806;Parent=Physo137806;rank=2 scaffold_57 . CDS 342315 342677 . - 0 ID=Physo137806;Parent=Physo137806;rank=1 scaffold_57 . biological_region 340362 340364 0.999 + . logic_name=eponine scaffold_57 . biological_region 340806 340809 0.999 + . logic_name=eponine scaffold_57 . biological_region 341421 341421 0.999 + . logic_name=eponine scaffold_57 . biological_region 341771 341774 0.999 + . logic_name=eponine scaffold_57 . biological_region 342174 342177 0.999 + . logic_name=eponine scaffold_57 . exon 336154 336873 . - . ID=Physo137806.10;Parent=Physo137806;constitutive=1;rank=10 scaffold_57 . exon 336919 338433 . - . ID=Physo137806.9;Parent=Physo137806;constitutive=1;rank=9 scaffold_57 . exon 338467 338959 . - . ID=Physo137806.8;Parent=Physo137806;constitutive=1;ensembl_phase=2;rank=8 scaffold_57 . exon 339056 339133 . - . ID=Physo137806.7;Parent=Physo137806;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_57 . exon 339295 340176 . - . ID=Physo137806.6;Parent=Physo137806;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_57 . exon 340482 341042 . - . ID=Physo137806.5;Parent=Physo137806;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_57 . exon 341097 341611 . - . ID=Physo137806.4;Parent=Physo137806;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_57 . exon 341693 341890 . - . ID=Physo137806.3;Parent=Physo137806;constitutive=1;rank=3 scaffold_57 . exon 342166 342276 . - . ID=Physo137806.2;Parent=Physo137806;constitutive=1;rank=2 scaffold_57 . exon 342315 342677 . - . ID=Physo137806.1;Parent=Physo137806;constitutive=1;rank=1 scaffold_57 . repeat_region 348240 348296 . ? . description=trf scaffold_57 . repeat_region 351690 351740 . ? . description=dust scaffold_57 ensembl protein_coding_gene 347722 350476 . + . ID=Physo137807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570072;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 347722 350476 . + . ID=Physo137807;Parent=Physo137807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . exon 347722 348254 . + . ID=Physo137807.1;Parent=Physo137807;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_57 . CDS 347740 348254 . + 0 ID=Physo137807;Parent=Physo137807;rank=1 scaffold_57 . CDS 348385 348623 . + 0 ID=Physo137807;Parent=Physo137807;rank=2 scaffold_57 . exon 348385 348623 . + . ID=Physo137807.2;Parent=Physo137807;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 348685 349358 . + 0 ID=Physo137807;Parent=Physo137807;rank=3 scaffold_57 . exon 348685 349358 . + . ID=Physo137807.3;Parent=Physo137807;constitutive=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 349433 350476 . + 0 ID=Physo137807;Parent=Physo137807;rank=4 scaffold_57 . exon 349433 350476 . + . ID=Physo137807.4;Parent=Physo137807;constitutive=1;rank=4 scaffold_57 ensembl protein_coding_gene 351745 355440 . + . ID=Physo137808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570073;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 351745 355440 . + . ID=Physo137808;Parent=Physo137808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 351745 355431 . + 0 ID=Physo137808;Parent=Physo137808;rank=1 scaffold_57 . exon 351745 355440 . + . ID=Physo137808.1;Parent=Physo137808;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_57 . biological_region 356478 356480 0.999 + . logic_name=eponine scaffold_57 . biological_region 357781 357784 0.999 - . logic_name=eponine scaffold_57 ensembl protein_coding_gene 355733 357191 . - . ID=Physo109074;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_570005;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 355733 357191 . - . ID=Physo109074;Parent=Physo109074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 355733 355867 . - 0 ID=Physo109074;Parent=Physo109074;rank=5 scaffold_57 . exon 355733 355867 . - . ID=Physo109074.5;Parent=Physo109074;constitutive=1;rank=5 scaffold_57 . CDS 355950 356053 . - 0 ID=Physo109074;Parent=Physo109074;rank=4 scaffold_57 . exon 355950 356053 . - . ID=Physo109074.4;Parent=Physo109074;constitutive=1;ensembl_phase=1;rank=4 scaffold_57 . CDS 356131 356761 . - 0 ID=Physo109074;Parent=Physo109074;rank=3 scaffold_57 . exon 356131 356761 . - . ID=Physo109074.3;Parent=Physo109074;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_57 . CDS 356858 356938 . - 0 ID=Physo109074;Parent=Physo109074;rank=2 scaffold_57 . exon 356858 356938 . - . ID=Physo109074.2;Parent=Physo109074;constitutive=1;rank=2 scaffold_57 . CDS 357063 357191 . - 0 ID=Physo109074;Parent=Physo109074;rank=1 scaffold_57 . exon 357063 357191 . - . ID=Physo109074.1;Parent=Physo109074;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 357546 359627 . + . ID=Physo137810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570075;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 357546 359627 . + . ID=Physo137810;Parent=Physo137810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 357546 359627 . + 0 ID=Physo137810;Parent=Physo137810;rank=1 scaffold_57 . exon 357546 359627 . + . ID=Physo137810.1;Parent=Physo137810;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 360002 361972 . + . ID=Physo137811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570076;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 360002 361972 . + . ID=Physo137811;Parent=Physo137811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 360002 361972 . + 0 ID=Physo137811;Parent=Physo137811;rank=1 scaffold_57 . exon 360002 361972 . + . ID=Physo137811.1;Parent=Physo137811;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 362402 364351 . + . ID=Physo137812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570077;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 362402 364351 . + . ID=Physo137812;Parent=Physo137812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 362402 364351 . + 0 ID=Physo137812;Parent=Physo137812;rank=1 scaffold_57 . exon 362402 364351 . + . ID=Physo137812.1;Parent=Physo137812;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 365019 368390 . - . ID=Physo137813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570078;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 365019 368390 . - . ID=Physo137813;Parent=Physo137813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 365019 365034 . - 0 ID=Physo137813;Parent=Physo137813;rank=4 scaffold_57 . exon 365019 365034 . - . ID=Physo137813.4;Parent=Physo137813;constitutive=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 365382 367489 . - 0 ID=Physo137813;Parent=Physo137813;rank=3 scaffold_57 . exon 365382 367489 . - . ID=Physo137813.3;Parent=Physo137813;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_57 . CDS 367555 368309 . - 0 ID=Physo137813;Parent=Physo137813;rank=2 scaffold_57 . CDS 368387 368390 . - 0 ID=Physo137813;Parent=Physo137813;rank=1 scaffold_57 . repeat_region 370121 370158 . ? . description=trf scaffold_57 . repeat_region 370121 370158 . ? . description=trf scaffold_57 . repeat_region 370121 370158 . ? . description=dust scaffold_57 . repeat_region 370121 370158 . + . description=(TCG)n scaffold_57 . repeat_region 370124 370159 . ? . description=trf scaffold_57 . repeat_region 372405 372417 . ? . description=dust scaffold_57 . repeat_region 373197 373275 . ? . description=dust scaffold_57 . repeat_region 373241 373275 . ? . description=trf scaffold_57 . exon 367555 368309 . - . ID=Physo137813.2;Parent=Physo137813;constitutive=1;ensembl_phase=1;rank=2 scaffold_57 . exon 368387 368390 . - . ID=Physo137813.1;Parent=Physo137813;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 369340 370920 . - . ID=Physo137814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570079;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 369340 370920 . - . ID=Physo137814;Parent=Physo137814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 369340 370920 . - 0 ID=Physo137814;Parent=Physo137814;rank=1 scaffold_57 . exon 369340 370920 . - . ID=Physo137814.1;Parent=Physo137814;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 371124 372559 . - . ID=Physo137815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570080;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 371124 372559 . - . ID=Physo137815;Parent=Physo137815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 371124 372329 . - 0 ID=Physo137815;Parent=Physo137815;rank=2 scaffold_57 . exon 371124 372329 . - . ID=Physo137815.2;Parent=Physo137815;constitutive=1;rank=2 scaffold_57 . CDS 372485 372559 . - 0 ID=Physo137815;Parent=Physo137815;rank=1 scaffold_57 . exon 372485 372559 . - . ID=Physo137815.1;Parent=Physo137815;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 372853 375446 . + . ID=Physo137816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570081;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 372853 375446 . + . ID=Physo137816;Parent=Physo137816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 372853 375278 . + 0 ID=Physo137816;Parent=Physo137816;rank=1 scaffold_57 . exon 372853 375278 . + . ID=Physo137816.1;Parent=Physo137816;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 375395 375446 . + 0 ID=Physo137816;Parent=Physo137816;rank=2 scaffold_57 . biological_region 377533 377538 0.999 - . logic_name=eponine scaffold_57 . biological_region 377636 377637 0.999 + . logic_name=eponine scaffold_57 . biological_region 381366 381372 0.999 - . logic_name=eponine scaffold_57 . biological_region 381384 381384 0.999 + . logic_name=eponine scaffold_57 . biological_region 382075 382080 0.999 + . logic_name=eponine scaffold_57 . biological_region 382189 382191 0.999 - . logic_name=eponine scaffold_57 . repeat_region 383381 383680 . - . description=GypsyPi-1c_LTR scaffold_57 . repeat_region 383689 384006 . - . description=GypsyPi-1c_I-int scaffold_57 . biological_region 383937 383940 0.999 + . logic_name=eponine scaffold_57 . biological_region 384133 384138 0.999 + . logic_name=eponine scaffold_57 . repeat_region 384563 384995 . - . description=GypsyPi-1c_I-int scaffold_57 ensembl protein_coding_gene 376935 378147 . + . ID=Physo109075;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_570006;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 376935 378147 . + . ID=Physo109075;Parent=Physo109075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . exon 376935 377253 . + . ID=Physo109075.1;Parent=Physo109075;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_57 . CDS 376944 377253 . + 0 ID=Physo109075;Parent=Physo109075;rank=1 scaffold_57 . CDS 377327 378105 . + 0 ID=Physo109075;Parent=Physo109075;rank=2 scaffold_57 . exon 377327 378147 . + . ID=Physo109075.2;Parent=Physo109075;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_57 . exon 375395 375446 . + . ID=Physo137816.2;Parent=Physo137816;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 ensembl protein_coding_gene 375926 376822 . - . ID=Physo137817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570082;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 375926 376822 . - . ID=Physo137817;Parent=Physo137817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 375926 375940 . - 0 ID=Physo137817;Parent=Physo137817;rank=2 scaffold_57 . exon 375926 375940 . - . ID=Physo137817.2;Parent=Physo137817;constitutive=1;rank=2 scaffold_57 . CDS 376052 376822 . - 0 ID=Physo137817;Parent=Physo137817;rank=1 scaffold_57 . exon 376052 376822 . - . ID=Physo137817.1;Parent=Physo137817;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 378847 380256 . + . ID=Physo137819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570084;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 378847 380256 . + . ID=Physo137819;Parent=Physo137819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 378847 380256 . + 0 ID=Physo137819;Parent=Physo137819;rank=1 scaffold_57 . exon 378847 380256 . + . ID=Physo137819.1;Parent=Physo137819;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 380365 381660 . - . ID=Physo137820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570085;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 380365 381660 . - . ID=Physo137820;Parent=Physo137820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 380365 381660 . - 0 ID=Physo137820;Parent=Physo137820;rank=1 scaffold_57 . exon 380365 381660 . - . ID=Physo137820.1;Parent=Physo137820;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 382085 382652 . - . ID=Physo137821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570086;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 382085 382652 . - . ID=Physo137821;Parent=Physo137821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 382085 382439 . - 0 ID=Physo137821;Parent=Physo137821;rank=2 scaffold_57 . exon 382085 382439 . - . ID=Physo137821.2;Parent=Physo137821;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 382504 382652 . - 0 ID=Physo137821;Parent=Physo137821;rank=1 scaffold_57 . exon 382504 382652 . - . ID=Physo137821.1;Parent=Physo137821;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 ensembl protein_coding_gene 383870 384917 . + . ID=Physo137822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570087;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 383870 384917 . + . ID=Physo137822;Parent=Physo137822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 383870 384882 . + 0 ID=Physo137822;Parent=Physo137822;rank=1 scaffold_57 . exon 383870 384882 . + . ID=Physo137822.1;Parent=Physo137822;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . CDS 384908 384917 . + 0 ID=Physo137822;Parent=Physo137822;rank=2 scaffold_57 . exon 384908 384917 . + . ID=Physo137822.2;Parent=Physo137822;constitutive=1;ensembl_phase=2;rank=2 scaffold_57 . repeat_region 385230 386242 . ? . description=dust scaffold_57 . repeat_region 387340 387389 . ? . description=dust scaffold_57 . repeat_region 387926 388024 . ? . description=trf scaffold_57 . repeat_region 388007 388175 . ? . description=trf scaffold_57 . repeat_region 388214 388263 . ? . description=dust scaffold_57 . repeat_region 389146 389195 . ? . description=dust scaffold_57 . repeat_region 390739 390837 . ? . description=trf scaffold_57 . repeat_region 390820 390988 . ? . description=trf scaffold_57 . repeat_region 391993 392072 . ? . description=dust scaffold_57 . repeat_region 393079 393128 . ? . description=dust scaffold_57 ensembl protein_coding_gene 386594 392462 . - . ID=Physo137823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570088;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 386594 392462 . - . ID=Physo137823;Parent=Physo137823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 386594 387206 . - 0 ID=Physo137823;Parent=Physo137823;rank=6 scaffold_57 . exon 386594 387206 . - . ID=Physo137823.6;Parent=Physo137823;constitutive=1;ensembl_phase=2;rank=6 scaffold_57 . CDS 387392 387829 . - 0 ID=Physo137823;Parent=Physo137823;rank=5 scaffold_57 . exon 387392 387829 . - . ID=Physo137823.5;Parent=Physo137823;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_57 . CDS 387866 388085 . - 0 ID=Physo137823;Parent=Physo137823;rank=4 scaffold_57 . exon 387866 388085 . - . ID=Physo137823.4;Parent=Physo137823;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_57 . CDS 389258 390642 . - 0 ID=Physo137823;Parent=Physo137823;rank=3 scaffold_57 . exon 389258 390642 . - . ID=Physo137823.3;Parent=Physo137823;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_57 . CDS 390679 391654 . - 0 ID=Physo137823;Parent=Physo137823;rank=2 scaffold_57 . exon 390679 391654 . - . ID=Physo137823.2;Parent=Physo137823;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_57 . CDS 392078 392462 . - 0 ID=Physo137823;Parent=Physo137823;rank=1 scaffold_57 . exon 392078 392462 . - . ID=Physo137823.1;Parent=Physo137823;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_57 ensembl protein_coding_gene 400104 400378 . + . ID=Physo118813;biotype=protein_coding;external_name=estExt_Genewise1.C_570045;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 400104 400378 . + . ID=Physo118813;Parent=Physo118813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . exon 400104 400378 . + . ID=Physo118813.1;Parent=Physo118813;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_57 . CDS 400143 400322 . + 0 ID=Physo118813;Parent=Physo118813;rank=1 scaffold_57 ensembl protein_coding_gene 400696 401346 . + . ID=Physo137824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570089;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 400696 401346 . + . ID=Physo137824;Parent=Physo137824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 400696 401346 . + 0 ID=Physo137824;Parent=Physo137824;rank=1 scaffold_57 . exon 400696 401346 . + . ID=Physo137824.1;Parent=Physo137824;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 402077 404311 . + . ID=Physo137825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570090;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 402077 404311 . + . ID=Physo137825;Parent=Physo137825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 402077 402112 . + 0 ID=Physo137825;Parent=Physo137825;rank=1 scaffold_57 . exon 402077 402112 . + . ID=Physo137825.1;Parent=Physo137825;constitutive=1;rank=1 scaffold_57 . CDS 402216 402683 . + 0 ID=Physo137825;Parent=Physo137825;rank=2 scaffold_57 . exon 402216 402683 . + . ID=Physo137825.2;Parent=Physo137825;constitutive=1;rank=2 scaffold_57 . CDS 402704 404311 . + 0 ID=Physo137825;Parent=Physo137825;rank=3 scaffold_57 . exon 402704 404311 . + . ID=Physo137825.3;Parent=Physo137825;constitutive=1;rank=3 scaffold_57 . repeat_region 408012 408061 . ? . description=dust scaffold_57 . repeat_region 410305 410513 . ? . description=dust scaffold_57 . repeat_region 411866 413012 . ? . description=dust scaffold_57 . biological_region 413200 413202 0.999 - . logic_name=eponine scaffold_57 . biological_region 413510 413511 0.999 + . logic_name=eponine scaffold_57 . biological_region 413557 413558 0.999 + . logic_name=eponine scaffold_57 . biological_region 413565 413566 0.999 - . logic_name=eponine scaffold_57 . biological_region 414187 414192 0.999 + . logic_name=eponine scaffold_57 ensembl protein_coding_gene 405718 410243 . - . ID=Physo137826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570091;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 405718 410243 . - . ID=Physo137826;Parent=Physo137826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 405718 406375 . - 0 ID=Physo137826;Parent=Physo137826;rank=7 scaffold_57 . exon 405718 406375 . - . ID=Physo137826.7;Parent=Physo137826;constitutive=1;ensembl_phase=2;rank=7 scaffold_57 . CDS 406399 406817 . - 0 ID=Physo137826;Parent=Physo137826;rank=6 scaffold_57 . exon 406399 406817 . - . ID=Physo137826.6;Parent=Physo137826;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_57 . CDS 406860 407147 . - 0 ID=Physo137826;Parent=Physo137826;rank=5 scaffold_57 . exon 406860 407147 . - . ID=Physo137826.5;Parent=Physo137826;constitutive=1;rank=5 scaffold_57 . CDS 407264 407801 . - 0 ID=Physo137826;Parent=Physo137826;rank=4 scaffold_57 . exon 407264 407801 . - . ID=Physo137826.4;Parent=Physo137826;constitutive=1;ensembl_phase=2;rank=4 scaffold_57 . CDS 408068 408658 . - 0 ID=Physo137826;Parent=Physo137826;rank=3 scaffold_57 . exon 408068 408658 . - . ID=Physo137826.3;Parent=Physo137826;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_57 . CDS 408682 409100 . - 0 ID=Physo137826;Parent=Physo137826;rank=2 scaffold_57 . exon 408682 409100 . - . ID=Physo137826.2;Parent=Physo137826;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_57 . CDS 409143 410243 . - 0 ID=Physo137826;Parent=Physo137826;rank=1 scaffold_57 . exon 409143 410243 . - . ID=Physo137826.1;Parent=Physo137826;constitutive=1;rank=1 scaffold_57 ensembl protein_coding_gene 413127 415769 . - . ID=Physo137827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_570092;logic_name=jgi_physo1_1 scaffold_57 ensembl transcript 413127 415769 . - . ID=Physo137827;Parent=Physo137827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_57 . CDS 413127 413224 . - 0 ID=Physo137827;Parent=Physo137827;rank=5 scaffold_57 . exon 413127 413224 . - . ID=Physo137827.5;Parent=Physo137827;constitutive=1;ensembl_phase=1;rank=5 scaffold_57 . CDS 413395 413812 . - 0 ID=Physo137827;Parent=Physo137827;rank=4 scaffold_57 . exon 413395 413812 . - . ID=Physo137827.4;Parent=Physo137827;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_57 . CDS 414042 414082 . - 0 ID=Physo137827;Parent=Physo137827;rank=3 scaffold_57 . exon 414042 414082 . - . ID=Physo137827.3;Parent=Physo137827;constitutive=1;ensembl_phase=1;rank=3 scaffold_57 . CDS 414185 414948 . - 0 ID=Physo137827;Parent=Physo137827;rank=2 scaffold_57 . exon 414185 414948 . - . ID=Physo137827.2;Parent=Physo137827;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_57 . CDS 415231 415769 . - 0 ID=Physo137827;Parent=Physo137827;rank=1 scaffold_57 . repeat_region 417351 417374 . ? . description=trf scaffold_57 . exon 415231 415769 . - . ID=Physo137827.1;Parent=Physo137827;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_57 . repeat_region 418781 443672 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_56 1 462229 scaffold_56 . biological_region 361 367 0.999 + . logic_name=eponine scaffold_56 . repeat_region 396 489 . ? . description=trf scaffold_56 . repeat_region 421 487 . ? . description=trf scaffold_56 . repeat_region 431 490 . ? . description=trf scaffold_56 . repeat_region 447 539 . ? . description=trf scaffold_56 . repeat_region 1903 1910 . ? . description=dust scaffold_56 . repeat_region 2495 2532 . ? . description=trf scaffold_56 . biological_region 2626 2631 0.999 + . logic_name=eponine scaffold_56 . repeat_region 2668 2731 . ? . description=dust scaffold_56 . biological_region 2706 2710 0.999 - . logic_name=eponine scaffold_56 . biological_region 2743 2749 0.999 - . logic_name=eponine scaffold_56 . biological_region 2780 2782 0.999 - . logic_name=eponine scaffold_56 . biological_region 3011 3015 0.999 - . logic_name=eponine scaffold_56 . biological_region 3525 3528 0.999 - . logic_name=eponine scaffold_56 . biological_region 3806 3809 0.999 + . logic_name=eponine scaffold_56 . repeat_region 4221 4228 . ? . description=dust scaffold_56 . biological_region 5160 5162 0.999 - . logic_name=eponine scaffold_56 . biological_region 5177 5179 0.999 - . logic_name=eponine scaffold_56 . biological_region 5209 5214 0.999 - . logic_name=eponine scaffold_56 . repeat_region 5510 5539 . ? . description=trf scaffold_56 . repeat_region 6837 6919 . ? . description=dust scaffold_56 . repeat_region 6850 6919 . ? . description=trf scaffold_56 . repeat_region 6850 6927 . ? . description=trf scaffold_56 . repeat_region 6850 6928 . ? . description=trf scaffold_56 . repeat_region 7792 7822 . ? . description=trf scaffold_56 . repeat_region 9047 9105 . ? . description=dust scaffold_56 . repeat_region 9055 9103 . ? . description=trf scaffold_56 . repeat_region 9061 9097 . ? . description=trf scaffold_56 . repeat_region 9168 9223 . ? . description=trf scaffold_56 . biological_region 9256 9259 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 2599 4676 . + . ID=Physo137627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560001;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 2599 4676 . + . ID=Physo137627;Parent=Physo137627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 2599 3150 . + 0 ID=Physo137627;Parent=Physo137627;rank=1 scaffold_56 . exon 2599 3150 . + . ID=Physo137627.1;Parent=Physo137627;constitutive=1;rank=1 scaffold_56 . CDS 3293 4048 . + 0 ID=Physo137627;Parent=Physo137627;rank=2 scaffold_56 . exon 3293 4303 . + . ID=Physo137627.2;Parent=Physo137627;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_56 . exon 4672 4676 . + . ID=Physo137627.3;Parent=Physo137627;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_56 ensembl protein_coding_gene 4877 9606 . - . ID=Physo137628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560002;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 4877 9606 . - . ID=Physo137628;Parent=Physo137628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 4877 6727 . - 0 ID=Physo137628;Parent=Physo137628;rank=5 scaffold_56 . exon 4877 6727 . - . ID=Physo137628.5;Parent=Physo137628;constitutive=1;rank=5 scaffold_56 . CDS 6799 7025 . - 0 ID=Physo137628;Parent=Physo137628;rank=4 scaffold_56 . exon 6799 7025 . - . ID=Physo137628.4;Parent=Physo137628;constitutive=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 7141 7325 . - 0 ID=Physo137628;Parent=Physo137628;rank=3 scaffold_56 . exon 7141 7325 . - . ID=Physo137628.3;Parent=Physo137628;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 7577 7988 . - 0 ID=Physo137628;Parent=Physo137628;rank=2 scaffold_56 . exon 7577 7988 . - . ID=Physo137628.2;Parent=Physo137628;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_56 . CDS 8052 9606 . - 0 ID=Physo137628;Parent=Physo137628;rank=1 scaffold_56 . exon 8052 9606 . - . ID=Physo137628.1;Parent=Physo137628;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 9772 11558 . + . ID=Physo137629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560003;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 9772 11558 . + . ID=Physo137629;Parent=Physo137629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 9772 11558 . + . ID=Physo137629.1;Parent=Physo137629;constitutive=1;ensembl_phase=-1;rank=1 scaffold_56 . CDS 9801 11558 . + 0 ID=Physo137629;Parent=Physo137629;rank=1 scaffold_56 ensembl protein_coding_gene 11699 12839 . - . ID=Physo109063;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_560001;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 11699 12839 . - . ID=Physo109063;Parent=Physo109063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 11699 11800 . - 0 ID=Physo109063;Parent=Physo109063;rank=6 scaffold_56 . exon 11699 11800 . - . ID=Physo109063.6;Parent=Physo109063;constitutive=1;rank=6 scaffold_56 . CDS 11875 11958 . - 0 ID=Physo109063;Parent=Physo109063;rank=5 scaffold_56 . exon 11875 11958 . - . ID=Physo109063.5;Parent=Physo109063;constitutive=1;rank=5 scaffold_56 . CDS 12035 12058 . - 0 ID=Physo109063;Parent=Physo109063;rank=4 scaffold_56 . exon 12035 12058 . - . ID=Physo109063.4;Parent=Physo109063;constitutive=1;rank=4 scaffold_56 . CDS 12147 12422 . - 0 ID=Physo109063;Parent=Physo109063;rank=3 scaffold_56 . exon 12147 12422 . - . ID=Physo109063.3;Parent=Physo109063;constitutive=1;rank=3 scaffold_56 . CDS 12508 12584 . - 0 ID=Physo109063;Parent=Physo109063;rank=2 scaffold_56 . exon 12508 12584 . - . ID=Physo109063.2;Parent=Physo109063;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 12659 12839 . - 0 ID=Physo109063;Parent=Physo109063;rank=1 scaffold_56 . exon 12659 12839 . - . ID=Physo109063.1;Parent=Physo109063;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 13054 13841 . + . ID=Physo137631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560005;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 13054 13841 . + . ID=Physo137631;Parent=Physo137631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 13054 13288 . + 0 ID=Physo137631;Parent=Physo137631;rank=1 scaffold_56 . exon 13054 13288 . + . ID=Physo137631.1;Parent=Physo137631;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 13359 13811 . + 0 ID=Physo137631;Parent=Physo137631;rank=2 scaffold_56 . exon 13359 13811 . + . ID=Physo137631.2;Parent=Physo137631;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 13837 13841 . + 0 ID=Physo137631;Parent=Physo137631;rank=3 scaffold_56 . exon 13837 13841 . + . ID=Physo137631.3;Parent=Physo137631;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 ensembl protein_coding_gene 13874 15765 . + . ID=Physo157662;biotype=protein_coding;external_name=C_scaffold_56000002;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 13874 15765 . + . ID=Physo157662;Parent=Physo157662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 13874 14711 . + 0 ID=Physo157662;Parent=Physo157662;rank=1 scaffold_56 . exon 13874 14711 . + . ID=Physo157662.1;Parent=Physo157662;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 15075 15240 . + 0 ID=Physo157662;Parent=Physo157662;rank=2 scaffold_56 . exon 15075 15240 . + . ID=Physo157662.2;Parent=Physo157662;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_56 . CDS 15358 15466 . + 0 ID=Physo157662;Parent=Physo157662;rank=3 scaffold_56 . exon 15358 15466 . + . ID=Physo157662.3;Parent=Physo157662;constitutive=1;ensembl_phase=2;rank=3 scaffold_56 . CDS 15512 15656 . + 0 ID=Physo157662;Parent=Physo157662;rank=4 scaffold_56 . exon 15512 15656 . + . ID=Physo157662.4;Parent=Physo157662;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_56 . CDS 15731 15765 . + 0 ID=Physo157662;Parent=Physo157662;rank=5 scaffold_56 . exon 15731 15765 . + . ID=Physo157662.5;Parent=Physo157662;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 ensembl protein_coding_gene 17399 18183 . - . ID=Physo157663;biotype=protein_coding;external_name=C_scaffold_56000003;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 17399 18183 . - . ID=Physo157663;Parent=Physo157663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 17399 17451 . - 0 ID=Physo157663;Parent=Physo157663;rank=2 scaffold_56 . exon 17399 17451 . - . ID=Physo157663.2;Parent=Physo157663;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 17511 18183 . - 0 ID=Physo157663;Parent=Physo157663;rank=1 scaffold_56 . exon 17511 18183 . - . ID=Physo157663.1;Parent=Physo157663;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . repeat_region 21610 21729 . ? . description=trf scaffold_56 . repeat_region 21661 21721 . ? . description=dust scaffold_56 . biological_region 22065 22068 0.999 - . logic_name=eponine scaffold_56 . biological_region 22086 22088 0.999 + . logic_name=eponine scaffold_56 . repeat_region 23472 23548 . ? . description=trf scaffold_56 . repeat_region 23482 23545 . ? . description=dust scaffold_56 . repeat_region 23493 23539 . ? . description=trf scaffold_56 . biological_region 23692 23697 0.999 - . logic_name=eponine scaffold_56 . biological_region 23717 23722 0.999 - . logic_name=eponine scaffold_56 . biological_region 24674 24675 0.999 + . logic_name=eponine scaffold_56 . biological_region 25912 25916 0.999 - . logic_name=eponine scaffold_56 . biological_region 25969 25972 0.999 + . logic_name=eponine scaffold_56 . repeat_region 26815 26863 . ? . description=trf scaffold_56 . repeat_region 26856 26881 . ? . description=trf scaffold_56 . biological_region 26898 26904 0.999 - . logic_name=eponine scaffold_56 . repeat_region 27961 28039 . ? . description=trf scaffold_56 . repeat_region 27962 28024 . ? . description=dust scaffold_56 . repeat_region 27990 28047 . ? . description=trf scaffold_56 ensembl protein_coding_gene 27935 31186 . - . ID=Physo137633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560007;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 27935 31186 . - . ID=Physo137633;Parent=Physo137633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 27935 28073 . - 0 ID=Physo137633;Parent=Physo137633;rank=5 scaffold_56 . exon 27935 28073 . - . ID=Physo137633.5;Parent=Physo137633;constitutive=1;ensembl_phase=2;rank=5 scaffold_56 . CDS 28187 28404 . - 0 ID=Physo137633;Parent=Physo137633;rank=4 scaffold_56 . exon 28187 28404 . - . ID=Physo137633.4;Parent=Physo137633;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_56 . CDS 28558 28980 . - 0 ID=Physo137633;Parent=Physo137633;rank=3 scaffold_56 . exon 28558 28980 . - . ID=Physo137633.3;Parent=Physo137633;constitutive=1;rank=3 scaffold_56 . CDS 29004 30754 . - 0 ID=Physo137633;Parent=Physo137633;rank=2 scaffold_56 . exon 29004 30754 . - . ID=Physo137633.2;Parent=Physo137633;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 30853 31186 . - 0 ID=Physo137633;Parent=Physo137633;rank=1 scaffold_56 . repeat_region 33833 34632 . - . description=GypsyPi-1c_I-int scaffold_56 . repeat_region 36796 37899 . - . description=GypsyPi-1c_I-int scaffold_56 . exon 30853 31186 . - . ID=Physo137633.1;Parent=Physo137633;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 33909 34745 . - . ID=Physo137634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560008;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 33909 34745 . - . ID=Physo137634;Parent=Physo137634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 33909 34394 . - 0 ID=Physo137634;Parent=Physo137634;rank=2 scaffold_56 . exon 33909 34394 . - . ID=Physo137634.2;Parent=Physo137634;constitutive=1;rank=2 scaffold_56 . CDS 34452 34745 . - 0 ID=Physo137634;Parent=Physo137634;rank=1 scaffold_56 . exon 34452 34745 . - . ID=Physo137634.1;Parent=Physo137634;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 36847 38125 . - . ID=Physo137635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560009;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 36847 38125 . - . ID=Physo137635;Parent=Physo137635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 36847 36860 . - 0 ID=Physo137635;Parent=Physo137635;rank=5 scaffold_56 . exon 36847 36860 . - . ID=Physo137635.5;Parent=Physo137635;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 . CDS 36923 37079 . - 0 ID=Physo137635;Parent=Physo137635;rank=4 scaffold_56 . exon 36923 37079 . - . ID=Physo137635.4;Parent=Physo137635;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_56 . CDS 37284 37661 . - 0 ID=Physo137635;Parent=Physo137635;rank=3 scaffold_56 . exon 37284 37661 . - . ID=Physo137635.3;Parent=Physo137635;constitutive=1;rank=3 scaffold_56 . CDS 37719 37942 . - 0 ID=Physo137635;Parent=Physo137635;rank=2 scaffold_56 . exon 37719 37942 . - . ID=Physo137635.2;Parent=Physo137635;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 37978 38125 . - 0 ID=Physo137635;Parent=Physo137635;rank=1 scaffold_56 . exon 37978 38125 . - . ID=Physo137635.1;Parent=Physo137635;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . repeat_region 38431 40053 . ? . description=dust scaffold_56 . biological_region 40452 40457 0.999 + . logic_name=eponine scaffold_56 . biological_region 40470 40476 0.999 + . logic_name=eponine scaffold_56 . biological_region 40499 40501 0.999 + . logic_name=eponine scaffold_56 . biological_region 40571 40572 0.999 - . logic_name=eponine scaffold_56 . repeat_region 41533 41619 . ? . description=dust scaffold_56 . biological_region 41917 41918 0.999 + . logic_name=eponine scaffold_56 . biological_region 41988 41990 0.999 - . logic_name=eponine scaffold_56 . biological_region 42013 42019 0.999 - . logic_name=eponine scaffold_56 . biological_region 42032 42037 0.999 - . logic_name=eponine scaffold_56 . repeat_region 43304 43314 . ? . description=dust scaffold_56 . biological_region 45654 45654 0.999 + . logic_name=eponine scaffold_56 ensembl protein_coding_gene 43379 45721 . + . ID=Physo137636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560010;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 43379 45721 . + . ID=Physo137636;Parent=Physo137636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 43379 45721 . + 0 ID=Physo137636;Parent=Physo137636;rank=1 scaffold_56 . exon 43379 45721 . + . ID=Physo137636.1;Parent=Physo137636;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 46842 47678 . + . ID=Physo137637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560011;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 46842 47678 . + . ID=Physo137637;Parent=Physo137637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 46842 47678 . + 0 ID=Physo137637;Parent=Physo137637;rank=1 scaffold_56 . exon 46842 47678 . + . ID=Physo137637.1;Parent=Physo137637;constitutive=1;rank=1 scaffold_56 . repeat_region 55220 55259 . ? . description=trf scaffold_56 . repeat_region 58389 58417 . ? . description=trf scaffold_56 . repeat_region 58389 58417 . ? . description=trf scaffold_56 . repeat_region 58540 60859 . - . description=GypsyPi-1c_I-int scaffold_56 ensembl protein_coding_gene 50609 51229 . + . ID=Physo137638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560012;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 50609 51229 . + . ID=Physo137638;Parent=Physo137638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 50609 51229 . + 0 ID=Physo137638;Parent=Physo137638;rank=1 scaffold_56 . exon 50609 51229 . + . ID=Physo137638.1;Parent=Physo137638;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 52033 61221 . - . ID=Physo137639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560013;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 52033 61221 . - . ID=Physo137639;Parent=Physo137639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 52033 52760 . - 0 ID=Physo137639;Parent=Physo137639;rank=14 scaffold_56 . exon 52033 52760 . - . ID=Physo137639.14;Parent=Physo137639;constitutive=1;ensembl_phase=1;rank=14 scaffold_56 . CDS 52838 53269 . - 0 ID=Physo137639;Parent=Physo137639;rank=13 scaffold_56 . exon 52838 53269 . - . ID=Physo137639.13;Parent=Physo137639;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_56 . CDS 53338 53526 . - 0 ID=Physo137639;Parent=Physo137639;rank=12 scaffold_56 . exon 53338 53526 . - . ID=Physo137639.12;Parent=Physo137639;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_56 . CDS 53588 53981 . - 0 ID=Physo137639;Parent=Physo137639;rank=11 scaffold_56 . exon 53588 53981 . - . ID=Physo137639.11;Parent=Physo137639;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_56 . CDS 54093 54515 . - 0 ID=Physo137639;Parent=Physo137639;rank=10 scaffold_56 . exon 54093 54515 . - . ID=Physo137639.10;Parent=Physo137639;constitutive=1;rank=10 scaffold_56 . CDS 54539 56289 . - 0 ID=Physo137639;Parent=Physo137639;rank=9 scaffold_56 . exon 54539 56289 . - . ID=Physo137639.9;Parent=Physo137639;constitutive=1;ensembl_phase=1;rank=9 scaffold_56 . CDS 56388 56544 . - 0 ID=Physo137639;Parent=Physo137639;rank=8 scaffold_56 . exon 56388 56544 . - . ID=Physo137639.8;Parent=Physo137639;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_56 . CDS 57710 57788 . - 0 ID=Physo137639;Parent=Physo137639;rank=7 scaffold_56 . exon 57710 57788 . - . ID=Physo137639.7;Parent=Physo137639;constitutive=1;ensembl_phase=2;rank=7 scaffold_56 . CDS 57906 57977 . - 0 ID=Physo137639;Parent=Physo137639;rank=6 scaffold_56 . exon 57906 57977 . - . ID=Physo137639.6;Parent=Physo137639;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_56 . CDS 58263 59318 . - 0 ID=Physo137639;Parent=Physo137639;rank=5 scaffold_56 . exon 58263 59318 . - . ID=Physo137639.5;Parent=Physo137639;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_56 . CDS 59339 60039 . - 0 ID=Physo137639;Parent=Physo137639;rank=4 scaffold_56 . CDS 60244 60621 . - 0 ID=Physo137639;Parent=Physo137639;rank=3 scaffold_56 . CDS 60679 60810 . - 0 ID=Physo137639;Parent=Physo137639;rank=2 scaffold_56 . CDS 60847 61221 . - 0 ID=Physo137639;Parent=Physo137639;rank=1 scaffold_56 . biological_region 61344 61344 0.999 - . logic_name=eponine scaffold_56 . biological_region 61382 61384 0.999 + . logic_name=eponine scaffold_56 . biological_region 61449 61450 0.999 - . logic_name=eponine scaffold_56 . biological_region 61517 61520 0.999 - . logic_name=eponine scaffold_56 . biological_region 66496 66501 0.999 - . logic_name=eponine scaffold_56 . biological_region 66572 66575 0.999 + . logic_name=eponine scaffold_56 . biological_region 66660 66661 0.999 - . logic_name=eponine scaffold_56 . repeat_region 67175 67197 . ? . description=dust scaffold_56 . biological_region 68262 68264 0.999 + . logic_name=eponine scaffold_56 . biological_region 68557 68557 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 68174 69284 . - . ID=Physo109064;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_560002;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 68174 69284 . - . ID=Physo109064;Parent=Physo109064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 68174 69284 . - . ID=Physo109064.1;Parent=Physo109064;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_56 . CDS 68240 69283 . - 0 ID=Physo109064;Parent=Physo109064;rank=1 scaffold_56 . exon 59339 60039 . - . ID=Physo137639.4;Parent=Physo137639;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_56 . exon 60244 60621 . - . ID=Physo137639.3;Parent=Physo137639;constitutive=1;rank=3 scaffold_56 . exon 60679 60810 . - . ID=Physo137639.2;Parent=Physo137639;constitutive=1;rank=2 scaffold_56 . exon 60847 61221 . - . ID=Physo137639.1;Parent=Physo137639;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 66380 68041 . + . ID=Physo137640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560014;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 66380 68041 . + . ID=Physo137640;Parent=Physo137640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 66380 67270 . + 0 ID=Physo137640;Parent=Physo137640;rank=1 scaffold_56 . exon 66380 67270 . + . ID=Physo137640.1;Parent=Physo137640;constitutive=1;rank=1 scaffold_56 . CDS 67340 68041 . + 0 ID=Physo137640;Parent=Physo137640;rank=2 scaffold_56 . exon 67340 68041 . + . ID=Physo137640.2;Parent=Physo137640;constitutive=1;rank=2 scaffold_56 . repeat_region 69439 69477 . ? . description=trf scaffold_56 . repeat_region 73670 73731 . ? . description=trf scaffold_56 . repeat_region 73842 73944 . ? . description=trf scaffold_56 . repeat_region 75267 75321 . ? . description=trf scaffold_56 . repeat_region 78103 78145 . ? . description=trf scaffold_56 ensembl protein_coding_gene 70327 71907 . - . ID=Physo109065;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_560003;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 70327 71907 . - . ID=Physo109065;Parent=Physo109065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 70327 71907 . - 0 ID=Physo109065;Parent=Physo109065;rank=1 scaffold_56 . exon 70327 71907 . - . ID=Physo109065.1;Parent=Physo109065;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 74532 81702 . + . ID=Physo137643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560017;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 74532 81702 . + . ID=Physo137643;Parent=Physo137643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 74532 75184 . + 0 ID=Physo137643;Parent=Physo137643;rank=1 scaffold_56 . exon 74532 75184 . + . ID=Physo137643.1;Parent=Physo137643;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 75378 75791 . + 0 ID=Physo137643;Parent=Physo137643;rank=2 scaffold_56 . exon 75378 75791 . + . ID=Physo137643.2;Parent=Physo137643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_56 . CDS 75845 76813 . + 0 ID=Physo137643;Parent=Physo137643;rank=3 scaffold_56 . exon 75845 76813 . + . ID=Physo137643.3;Parent=Physo137643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_56 . CDS 76912 77521 . + 0 ID=Physo137643;Parent=Physo137643;rank=4 scaffold_56 . exon 76912 77521 . + . ID=Physo137643.4;Parent=Physo137643;constitutive=1;ensembl_phase=2;rank=4 scaffold_56 . CDS 77631 79036 . + 0 ID=Physo137643;Parent=Physo137643;rank=5 scaffold_56 . exon 77631 79036 . + . ID=Physo137643.5;Parent=Physo137643;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_56 . CDS 79094 81654 . + 0 ID=Physo137643;Parent=Physo137643;rank=6 scaffold_56 . CDS 81683 81702 . + 0 ID=Physo137643;Parent=Physo137643;rank=7 scaffold_56 . biological_region 80502 80505 0.999 + . logic_name=eponine scaffold_56 . biological_region 80519 80521 0.999 + . logic_name=eponine scaffold_56 . biological_region 80531 80535 0.999 + . logic_name=eponine scaffold_56 . biological_region 80547 80550 0.999 + . logic_name=eponine scaffold_56 . biological_region 80552 80555 0.999 - . logic_name=eponine scaffold_56 . biological_region 81570 81571 0.999 + . logic_name=eponine scaffold_56 . biological_region 81765 81773 0.999 + . logic_name=eponine scaffold_56 . biological_region 81788 81789 0.999 - . logic_name=eponine scaffold_56 . biological_region 82191 82194 0.999 - . logic_name=eponine scaffold_56 . repeat_region 82337 82344 . ? . description=dust scaffold_56 . biological_region 82710 82715 0.999 + . logic_name=eponine scaffold_56 . biological_region 82744 82745 0.999 - . logic_name=eponine scaffold_56 . biological_region 83071 83073 0.999 - . logic_name=eponine scaffold_56 . biological_region 83111 83113 0.999 - . logic_name=eponine scaffold_56 . biological_region 83521 83527 0.999 + . logic_name=eponine scaffold_56 . biological_region 83572 83574 0.999 - . logic_name=eponine scaffold_56 . biological_region 83609 83611 0.999 + . logic_name=eponine scaffold_56 . biological_region 83624 83631 0.999 + . logic_name=eponine scaffold_56 . biological_region 83628 83633 0.999 - . logic_name=eponine scaffold_56 . biological_region 83648 83653 0.999 + . logic_name=eponine scaffold_56 . biological_region 83678 83681 0.999 - . logic_name=eponine scaffold_56 . biological_region 83695 83700 0.999 - . logic_name=eponine scaffold_56 . biological_region 83734 83736 0.999 + . logic_name=eponine scaffold_56 . biological_region 83760 83764 0.999 - . logic_name=eponine scaffold_56 . biological_region 84036 84038 0.999 + . logic_name=eponine scaffold_56 . biological_region 84321 84328 0.999 + . logic_name=eponine scaffold_56 . biological_region 84345 84347 0.999 - . logic_name=eponine scaffold_56 . biological_region 84348 84353 0.999 + . logic_name=eponine scaffold_56 . biological_region 84386 84393 0.999 - . logic_name=eponine scaffold_56 . biological_region 84402 84405 0.999 + . logic_name=eponine scaffold_56 . biological_region 84436 84440 0.999 - . logic_name=eponine scaffold_56 . biological_region 84492 84495 0.999 + . logic_name=eponine scaffold_56 . biological_region 84509 84512 0.999 - . logic_name=eponine scaffold_56 . biological_region 84625 84627 0.999 - . logic_name=eponine scaffold_56 . biological_region 84666 84668 0.999 - . logic_name=eponine scaffold_56 . biological_region 84721 84723 0.999 + . logic_name=eponine scaffold_56 . biological_region 84740 84741 0.999 + . logic_name=eponine scaffold_56 . biological_region 84776 84780 0.999 - . logic_name=eponine scaffold_56 . biological_region 84833 84836 0.999 + . logic_name=eponine scaffold_56 . biological_region 85172 85180 0.999 + . logic_name=eponine scaffold_56 . biological_region 85200 85206 0.999 - . logic_name=eponine scaffold_56 . repeat_region 85204 85225 . ? . description=dust scaffold_56 . biological_region 85247 85251 0.999 - . logic_name=eponine scaffold_56 . biological_region 85263 85264 0.999 + . logic_name=eponine scaffold_56 . biological_region 85418 85419 0.999 + . logic_name=eponine scaffold_56 . biological_region 85788 85792 0.999 + . logic_name=eponine scaffold_56 . biological_region 86038 86042 0.999 + . logic_name=eponine scaffold_56 . biological_region 86062 86070 0.999 + . logic_name=eponine scaffold_56 . biological_region 86068 86075 0.999 - . logic_name=eponine scaffold_56 . biological_region 86191 86195 0.999 - . logic_name=eponine scaffold_56 . biological_region 86250 86253 0.999 + . logic_name=eponine scaffold_56 . biological_region 86300 86306 0.999 - . logic_name=eponine scaffold_56 . repeat_region 86599 86615 . ? . description=dust scaffold_56 . repeat_region 86841 86848 . ? . description=dust scaffold_56 . biological_region 88344 88344 0.999 - . logic_name=eponine scaffold_56 . biological_region 88399 88401 0.999 + . logic_name=eponine scaffold_56 . exon 79094 81654 . + . ID=Physo137643.6;Parent=Physo137643;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_56 . exon 81683 81702 . + . ID=Physo137643.7;Parent=Physo137643;constitutive=1;ensembl_phase=1;rank=7 scaffold_56 ensembl protein_coding_gene 82630 85856 . - . ID=Physo137644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560018;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 82630 85856 . - . ID=Physo137644;Parent=Physo137644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 82630 82913 . - 0 ID=Physo137644;Parent=Physo137644;rank=3 scaffold_56 . exon 82630 82913 . - . ID=Physo137644.3;Parent=Physo137644;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 82976 83213 . - 0 ID=Physo137644;Parent=Physo137644;rank=2 scaffold_56 . exon 82976 83213 . - . ID=Physo137644.2;Parent=Physo137644;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_56 . CDS 83316 85856 . - 0 ID=Physo137644;Parent=Physo137644;rank=1 scaffold_56 . exon 83316 85856 . - . ID=Physo137644.1;Parent=Physo137644;constitutive=1;rank=1 scaffold_56 . repeat_region 88763 88858 . ? . description=trf scaffold_56 . repeat_region 90201 90258 . ? . description=trf scaffold_56 . repeat_region 94946 94968 . ? . description=trf scaffold_56 ensembl protein_coding_gene 89038 89902 . + . ID=Physo137645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560019;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 89038 89902 . + . ID=Physo137645;Parent=Physo137645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 89038 89070 . + 0 ID=Physo137645;Parent=Physo137645;rank=1 scaffold_56 . exon 89038 89070 . + . ID=Physo137645.1;Parent=Physo137645;constitutive=1;rank=1 scaffold_56 . CDS 89138 89398 . + 0 ID=Physo137645;Parent=Physo137645;rank=2 scaffold_56 . exon 89138 89398 . + . ID=Physo137645.2;Parent=Physo137645;constitutive=1;rank=2 scaffold_56 . CDS 89438 89902 . + 0 ID=Physo137645;Parent=Physo137645;rank=3 scaffold_56 . exon 89438 89902 . + . ID=Physo137645.3;Parent=Physo137645;constitutive=1;rank=3 scaffold_56 ensembl protein_coding_gene 91135 93041 . + . ID=Physo137646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560020;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 91135 93041 . + . ID=Physo137646;Parent=Physo137646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 91135 92622 . + 0 ID=Physo137646;Parent=Physo137646;rank=1 scaffold_56 . exon 91135 92622 . + . ID=Physo137646.1;Parent=Physo137646;constitutive=1;rank=1 scaffold_56 . CDS 92850 93041 . + 0 ID=Physo137646;Parent=Physo137646;rank=2 scaffold_56 . exon 92850 93041 . + . ID=Physo137646.2;Parent=Physo137646;constitutive=1;rank=2 scaffold_56 ensembl protein_coding_gene 93521 94499 . - . ID=Physo137647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560021;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 93521 94499 . - . ID=Physo137647;Parent=Physo137647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 93521 93555 . - 0 ID=Physo137647;Parent=Physo137647;rank=4 scaffold_56 . exon 93521 93555 . - . ID=Physo137647.4;Parent=Physo137647;constitutive=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 93591 94013 . - 0 ID=Physo137647;Parent=Physo137647;rank=3 scaffold_56 . exon 93591 94013 . - . ID=Physo137647.3;Parent=Physo137647;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 94156 94348 . - 0 ID=Physo137647;Parent=Physo137647;rank=2 scaffold_56 . exon 94156 94348 . - . ID=Physo137647.2;Parent=Physo137647;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_56 . CDS 94428 94499 . - 0 ID=Physo137647;Parent=Physo137647;rank=1 scaffold_56 . exon 94428 94499 . - . ID=Physo137647.1;Parent=Physo137647;constitutive=1;rank=1 scaffold_56 . repeat_region 97023 99624 . ? . description=dust scaffold_56 . biological_region 100496 100499 0.999 + . logic_name=eponine scaffold_56 . repeat_region 101036 102201 . ? . description=dust scaffold_56 . repeat_region 103496 115560 . ? . description=dust scaffold_56 ensembl protein_coding_gene 100084 103037 . - . ID=Physo137648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560022;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 100084 103037 . - . ID=Physo137648;Parent=Physo137648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 100084 100091 . - 0 ID=Physo137648;Parent=Physo137648;rank=4 scaffold_56 . exon 100084 100091 . - . ID=Physo137648.4;Parent=Physo137648;constitutive=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 100247 100390 . - 0 ID=Physo137648;Parent=Physo137648;rank=3 scaffold_56 . exon 100247 100390 . - . ID=Physo137648.3;Parent=Physo137648;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 100485 101017 . - 0 ID=Physo137648;Parent=Physo137648;rank=2 scaffold_56 . exon 100485 101017 . - . ID=Physo137648.2;Parent=Physo137648;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 102208 103037 . - 0 ID=Physo137648;Parent=Physo137648;rank=1 scaffold_56 . exon 102208 103037 . - . ID=Physo137648.1;Parent=Physo137648;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 ensembl protein_coding_gene 116319 118123 . + . ID=Physo137649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560023;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 116319 118123 . + . ID=Physo137649;Parent=Physo137649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 116319 117434 . + 0 ID=Physo137649;Parent=Physo137649;rank=1 scaffold_56 . exon 116319 117434 . + . ID=Physo137649.1;Parent=Physo137649;constitutive=1;rank=1 scaffold_56 . CDS 117905 118123 . + 0 ID=Physo137649;Parent=Physo137649;rank=2 scaffold_56 . exon 117905 118123 . + . ID=Physo137649.2;Parent=Physo137649;constitutive=1;rank=2 scaffold_56 . repeat_region 120372 122552 . ? . description=dust scaffold_56 . repeat_region 123440 123467 . ? . description=dust scaffold_56 . repeat_region 123443 123467 . ? . description=trf scaffold_56 . repeat_region 124042 124055 . ? . description=dust scaffold_56 . repeat_region 124589 124596 . ? . description=dust scaffold_56 . repeat_region 124914 124984 . ? . description=trf scaffold_56 ensembl protein_coding_gene 119681 120091 . - . ID=Physo137650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560024;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 119681 120091 . - . ID=Physo137650;Parent=Physo137650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 119681 120091 . - 0 ID=Physo137650;Parent=Physo137650;rank=1 scaffold_56 . exon 119681 120091 . - . ID=Physo137650.1;Parent=Physo137650;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 125162 128147 . - . ID=Physo137651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560025;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 125162 128147 . - . ID=Physo137651;Parent=Physo137651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 125162 125569 . - . ID=Physo137651.2;Parent=Physo137651;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_56 . CDS 125229 125569 . - 0 ID=Physo137651;Parent=Physo137651;rank=2 scaffold_56 . CDS 125639 128147 . - 0 ID=Physo137651;Parent=Physo137651;rank=1 scaffold_56 . exon 125639 128147 . - . ID=Physo137651.1;Parent=Physo137651;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . biological_region 130942 130943 0.999 + . logic_name=eponine scaffold_56 . biological_region 132318 132321 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 134169 135617 . + . ID=Physo137654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560028;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 134169 135617 . + . ID=Physo137654;Parent=Physo137654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 134169 135617 . + 0 ID=Physo137654;Parent=Physo137654;rank=1 scaffold_56 . exon 134169 135617 . + . ID=Physo137654.1;Parent=Physo137654;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 128435 131492 . - . ID=Physo157665;biotype=protein_coding;external_name=C_scaffold_56000005;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 128435 131492 . - . ID=Physo157665;Parent=Physo157665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 128435 128578 . - 0 ID=Physo157665;Parent=Physo157665;rank=9 scaffold_56 . exon 128435 128578 . - . ID=Physo157665.9;Parent=Physo157665;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_56 . CDS 128648 128808 . - 0 ID=Physo157665;Parent=Physo157665;rank=8 scaffold_56 . exon 128648 128808 . - . ID=Physo157665.8;Parent=Physo157665;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_56 . CDS 128842 129040 . - 0 ID=Physo157665;Parent=Physo157665;rank=7 scaffold_56 . exon 128842 129040 . - . ID=Physo157665.7;Parent=Physo157665;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_56 . CDS 129194 129517 . - 0 ID=Physo157665;Parent=Physo157665;rank=6 scaffold_56 . exon 129194 129517 . - . ID=Physo157665.6;Parent=Physo157665;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_56 . CDS 129539 129608 . - 0 ID=Physo157665;Parent=Physo157665;rank=5 scaffold_56 . exon 129539 129608 . - . ID=Physo157665.5;Parent=Physo157665;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_56 . CDS 129762 130838 . - 0 ID=Physo157665;Parent=Physo157665;rank=4 scaffold_56 . exon 129762 130838 . - . ID=Physo157665.4;Parent=Physo157665;constitutive=1;rank=4 scaffold_56 . CDS 130890 131017 . - 0 ID=Physo157665;Parent=Physo157665;rank=3 scaffold_56 . exon 130890 131017 . - . ID=Physo157665.3;Parent=Physo157665;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 131098 131236 . - 0 ID=Physo157665;Parent=Physo157665;rank=2 scaffold_56 . exon 131098 131236 . - . ID=Physo157665.2;Parent=Physo157665;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_56 . CDS 131328 131492 . - 0 ID=Physo157665;Parent=Physo157665;rank=1 scaffold_56 . exon 131328 131492 . - . ID=Physo157665.1;Parent=Physo157665;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 132627 133324 . + . ID=Physo157666;biotype=protein_coding;external_name=C_scaffold_56000006;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 132627 133324 . + . ID=Physo157666;Parent=Physo157666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 132627 132779 . + 0 ID=Physo157666;Parent=Physo157666;rank=1 scaffold_56 . exon 132627 132779 . + . ID=Physo157666.1;Parent=Physo157666;constitutive=1;rank=1 scaffold_56 . CDS 132843 133025 . + 0 ID=Physo157666;Parent=Physo157666;rank=2 scaffold_56 . exon 132843 133025 . + . ID=Physo157666.2;Parent=Physo157666;constitutive=1;rank=2 scaffold_56 . CDS 133172 133324 . + 0 ID=Physo157666;Parent=Physo157666;rank=3 scaffold_56 . exon 133172 133324 . + . ID=Physo157666.3;Parent=Physo157666;constitutive=1;rank=3 scaffold_56 . repeat_region 138304 138351 . ? . description=trf scaffold_56 . repeat_region 139538 139562 . ? . description=trf scaffold_56 . repeat_region 139852 139883 . ? . description=trf scaffold_56 ensembl protein_coding_gene 137946 138639 . - . ID=Physo137655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560029;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 137946 138639 . - . ID=Physo137655;Parent=Physo137655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 137946 137960 . - 0 ID=Physo137655;Parent=Physo137655;rank=2 scaffold_56 . exon 137946 137960 . - . ID=Physo137655.2;Parent=Physo137655;constitutive=1;rank=2 scaffold_56 . CDS 138055 138639 . - 0 ID=Physo137655;Parent=Physo137655;rank=1 scaffold_56 . exon 138055 138639 . - . ID=Physo137655.1;Parent=Physo137655;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 138819 139547 . + . ID=Physo137656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560030;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 138819 139547 . + . ID=Physo137656;Parent=Physo137656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 138819 139547 . + . ID=Physo137656.1;Parent=Physo137656;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_56 . CDS 138821 139546 . + 0 ID=Physo137656;Parent=Physo137656;rank=1 scaffold_56 ensembl protein_coding_gene 140185 143133 . + . ID=Physo137657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560031;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 140185 143133 . + . ID=Physo137657;Parent=Physo137657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 140185 142663 . + 0 ID=Physo137657;Parent=Physo137657;rank=1 scaffold_56 . exon 140185 142663 . + . ID=Physo137657.1;Parent=Physo137657;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 142750 142955 . + 0 ID=Physo137657;Parent=Physo137657;rank=2 scaffold_56 . exon 142750 143133 . + . ID=Physo137657.2;Parent=Physo137657;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_56 ensembl protein_coding_gene 143354 144196 . + . ID=Physo137658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560032;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 143354 144196 . + . ID=Physo137658;Parent=Physo137658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 143354 144196 . + 0 ID=Physo137658;Parent=Physo137658;rank=1 scaffold_56 . exon 143354 144196 . + . ID=Physo137658.1;Parent=Physo137658;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 144258 146090 . - . ID=Physo137659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560033;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 144258 146090 . - . ID=Physo137659;Parent=Physo137659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 144258 146090 . - 0 ID=Physo137659;Parent=Physo137659;rank=1 scaffold_56 . exon 144258 146090 . - . ID=Physo137659.1;Parent=Physo137659;constitutive=1;rank=1 scaffold_56 . biological_region 149817 149819 0.999 - . logic_name=eponine scaffold_56 . repeat_region 151366 151546 . - . description=GypsyPi-1c_LTR scaffold_56 . repeat_region 151669 151991 . - . description=GypsyPi-1c_I-int scaffold_56 . biological_region 151922 151925 0.999 + . logic_name=eponine scaffold_56 . biological_region 152118 152123 0.999 + . logic_name=eponine scaffold_56 . biological_region 152482 152482 0.999 + . logic_name=eponine scaffold_56 . repeat_region 152560 158375 . - . description=GypsyPi-1c_I-int scaffold_56 . biological_region 153756 153758 0.999 + . logic_name=eponine scaffold_56 . biological_region 153911 153916 0.999 - . logic_name=eponine scaffold_56 . biological_region 153961 153965 0.999 - . logic_name=eponine scaffold_56 . biological_region 154645 154649 0.999 + . logic_name=eponine scaffold_56 . biological_region 156352 156352 0.999 + . logic_name=eponine scaffold_56 ensembl protein_coding_gene 151855 154071 . + . ID=Physo137660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560034;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 151855 154071 . + . ID=Physo137660;Parent=Physo137660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 151855 154071 . + 0 ID=Physo137660;Parent=Physo137660;rank=1 scaffold_56 . exon 151855 154071 . + . ID=Physo137660.1;Parent=Physo137660;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 154295 157904 . - . ID=Physo137661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560035;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 154295 157904 . - . ID=Physo137661;Parent=Physo137661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 154295 154732 . - 0 ID=Physo137661;Parent=Physo137661;rank=7 scaffold_56 . exon 154295 154732 . - . ID=Physo137661.7;Parent=Physo137661;constitutive=1;rank=7 scaffold_56 . CDS 154774 155377 . - 0 ID=Physo137661;Parent=Physo137661;rank=6 scaffold_56 . exon 154774 155377 . - . ID=Physo137661.6;Parent=Physo137661;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 . CDS 155447 156270 . - 0 ID=Physo137661;Parent=Physo137661;rank=5 scaffold_56 . exon 155447 156270 . - . ID=Physo137661.5;Parent=Physo137661;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_56 . CDS 156295 156748 . - 0 ID=Physo137661;Parent=Physo137661;rank=4 scaffold_56 . exon 156295 156748 . - . ID=Physo137661.4;Parent=Physo137661;constitutive=1;ensembl_phase=2;rank=4 scaffold_56 . CDS 156783 157339 . - 0 ID=Physo137661;Parent=Physo137661;rank=3 scaffold_56 . exon 156783 157339 . - . ID=Physo137661.3;Parent=Physo137661;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_56 . CDS 157604 157669 . - 0 ID=Physo137661;Parent=Physo137661;rank=2 scaffold_56 . CDS 157728 157904 . - 0 ID=Physo137661;Parent=Physo137661;rank=1 scaffold_56 . repeat_region 157288 157364 . ? . description=trf scaffold_56 . repeat_region 157321 157389 . ? . description=trf scaffold_56 . repeat_region 157381 157500 . ? . description=trf scaffold_56 . repeat_region 158854 158901 . ? . description=trf scaffold_56 . repeat_region 159364 159424 . ? . description=dust scaffold_56 . repeat_region 159364 159424 . ? . description=trf scaffold_56 . repeat_region 161651 161700 . ? . description=dust scaffold_56 . repeat_region 165480 165530 . ? . description=dust scaffold_56 . repeat_region 166422 166441 . ? . description=trf scaffold_56 . exon 157604 157669 . - . ID=Physo137661.2;Parent=Physo137661;constitutive=1;rank=2 scaffold_56 . exon 157728 157904 . - . ID=Physo137661.1;Parent=Physo137661;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 160369 161249 . - . ID=Physo137662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560036;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 160369 161249 . - . ID=Physo137662;Parent=Physo137662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 160369 161072 . - 0 ID=Physo137662;Parent=Physo137662;rank=2 scaffold_56 . exon 160369 161072 . - . ID=Physo137662.2;Parent=Physo137662;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 161198 161249 . - 0 ID=Physo137662;Parent=Physo137662;rank=1 scaffold_56 . exon 161198 161249 . - . ID=Physo137662.1;Parent=Physo137662;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 162049 162929 . - . ID=Physo137663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560037;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 162049 162929 . - . ID=Physo137663;Parent=Physo137663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 162049 162752 . - 0 ID=Physo137663;Parent=Physo137663;rank=2 scaffold_56 . exon 162049 162752 . - . ID=Physo137663.2;Parent=Physo137663;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 162878 162929 . - 0 ID=Physo137663;Parent=Physo137663;rank=1 scaffold_56 . exon 162878 162929 . - . ID=Physo137663.1;Parent=Physo137663;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 167079 167984 . - . ID=Physo137664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560038;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 167079 167984 . - . ID=Physo137664;Parent=Physo137664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 167079 167984 . - 0 ID=Physo137664;Parent=Physo137664;rank=1 scaffold_56 . exon 167079 167984 . - . ID=Physo137664.1;Parent=Physo137664;constitutive=1;rank=1 scaffold_56 . biological_region 170096 170096 0.999 + . logic_name=eponine scaffold_56 . biological_region 173193 173198 0.999 - . logic_name=eponine scaffold_56 . biological_region 173691 173692 0.999 + . logic_name=eponine scaffold_56 . biological_region 173994 173996 0.999 - . logic_name=eponine scaffold_56 . biological_region 174016 174021 0.999 + . logic_name=eponine scaffold_56 . biological_region 176409 176414 0.999 + . logic_name=eponine scaffold_56 . biological_region 176992 176994 0.999 + . logic_name=eponine scaffold_56 ensembl protein_coding_gene 172816 173379 . - . ID=Physo137665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560039;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 172816 173379 . - . ID=Physo137665;Parent=Physo137665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 172816 173379 . - . ID=Physo137665.1;Parent=Physo137665;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_56 . CDS 172918 173379 . - 0 ID=Physo137665;Parent=Physo137665;rank=1 scaffold_56 ensembl protein_coding_gene 173886 175439 . + . ID=Physo137666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560040;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 173886 175439 . + . ID=Physo137666;Parent=Physo137666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 173886 175198 . + 0 ID=Physo137666;Parent=Physo137666;rank=1 scaffold_56 . exon 173886 175198 . + . ID=Physo137666.1;Parent=Physo137666;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 175280 175439 . + 0 ID=Physo137666;Parent=Physo137666;rank=2 scaffold_56 . exon 175280 175439 . + . ID=Physo137666.2;Parent=Physo137666;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 ensembl protein_coding_gene 176166 176764 . + . ID=Physo137667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560041;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 176166 176764 . + . ID=Physo137667;Parent=Physo137667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 176166 176764 . + . ID=Physo137667.1;Parent=Physo137667;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_56 . CDS 176227 176688 . + 0 ID=Physo137667;Parent=Physo137667;rank=1 scaffold_56 . repeat_region 179747 179775 . ? . description=dust scaffold_56 . repeat_region 179747 179775 . ? . description=trf scaffold_56 . repeat_region 181493 181687 . - . description=Polinton-1_PI scaffold_56 . repeat_region 181662 181782 . - . description=Polinton-1_PI scaffold_56 . repeat_region 181841 181876 . ? . description=trf scaffold_56 . repeat_region 183014 183047 . - . description=Polinton-1_PI scaffold_56 . repeat_region 183198 183477 . - . description=Polinton-1_PI scaffold_56 . repeat_region 184284 187582 . + . description=Polinton-1_PI scaffold_56 ensembl protein_coding_gene 177896 179398 . + . ID=Physo137668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560042;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 177896 179398 . + . ID=Physo137668;Parent=Physo137668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 177896 179398 . + 0 ID=Physo137668;Parent=Physo137668;rank=1 scaffold_56 . exon 177896 179398 . + . ID=Physo137668.1;Parent=Physo137668;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 179720 181663 . + . ID=Physo137669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560043;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 179720 181663 . + . ID=Physo137669;Parent=Physo137669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 179720 180793 . + . ID=Physo137669.1;Parent=Physo137669;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_56 . CDS 179775 180793 . + 0 ID=Physo137669;Parent=Physo137669;rank=1 scaffold_56 . CDS 181165 181496 . + 0 ID=Physo137669;Parent=Physo137669;rank=2 scaffold_56 . exon 181165 181496 . + . ID=Physo137669.2;Parent=Physo137669;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 181659 181663 . + 0 ID=Physo137669;Parent=Physo137669;rank=3 scaffold_56 . exon 181659 181663 . + . ID=Physo137669.3;Parent=Physo137669;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 ensembl protein_coding_gene 181931 184079 . - . ID=Physo137670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560044;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 181931 184079 . - . ID=Physo137670;Parent=Physo137670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 181931 182206 . - . ID=Physo137670.5;Parent=Physo137670;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_56 . CDS 182203 182206 . - 0 ID=Physo137670;Parent=Physo137670;rank=5 scaffold_56 . CDS 182478 182618 . - 0 ID=Physo137670;Parent=Physo137670;rank=4 scaffold_56 . exon 182478 182618 . - . ID=Physo137670.4;Parent=Physo137670;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_56 . CDS 182860 183380 . - 0 ID=Physo137670;Parent=Physo137670;rank=3 scaffold_56 . exon 182860 183380 . - . ID=Physo137670.3;Parent=Physo137670;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_56 . CDS 183583 183747 . - 0 ID=Physo137670;Parent=Physo137670;rank=2 scaffold_56 . exon 183583 183747 . - . ID=Physo137670.2;Parent=Physo137670;constitutive=1;rank=2 scaffold_56 . CDS 183774 184079 . - 0 ID=Physo137670;Parent=Physo137670;rank=1 scaffold_56 . exon 183774 184079 . - . ID=Physo137670.1;Parent=Physo137670;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 184916 186908 . + . ID=Physo137671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560045;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 184916 186908 . + . ID=Physo137671;Parent=Physo137671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 184916 185696 . + 0 ID=Physo137671;Parent=Physo137671;rank=1 scaffold_56 . exon 184916 185696 . + . ID=Physo137671.1;Parent=Physo137671;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 185975 186280 . + 0 ID=Physo137671;Parent=Physo137671;rank=2 scaffold_56 . exon 185975 186280 . + . ID=Physo137671.2;Parent=Physo137671;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 186401 186514 . + 0 ID=Physo137671;Parent=Physo137671;rank=3 scaffold_56 . exon 186401 186514 . + . ID=Physo137671.3;Parent=Physo137671;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 186560 186835 . + 0 ID=Physo137671;Parent=Physo137671;rank=4 scaffold_56 . exon 186560 186835 . + . ID=Physo137671.4;Parent=Physo137671;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 186898 186908 . + 0 ID=Physo137671;Parent=Physo137671;rank=5 scaffold_56 . exon 186898 186908 . + . ID=Physo137671.5;Parent=Physo137671;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 . repeat_region 195200 197073 . ? . description=dust scaffold_56 . repeat_region 197077 197709 . + . description=Polinton-1_PI scaffold_56 . repeat_region 197840 197889 . ? . description=dust scaffold_56 . repeat_region 197890 200242 . + . description=Polinton-1_PI scaffold_56 . repeat_region 200493 200524 . ? . description=trf scaffold_56 . biological_region 200494 200497 0.999 - . logic_name=eponine scaffold_56 . biological_region 200886 200886 0.999 + . logic_name=eponine scaffold_56 . biological_region 202965 202968 0.999 + . logic_name=eponine scaffold_56 . biological_region 204530 204533 0.999 + . logic_name=eponine scaffold_56 . biological_region 204882 204883 0.999 - . logic_name=eponine scaffold_56 . biological_region 206175 206177 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 199988 200605 . + . ID=Physo137672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560046;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 199988 200605 . + . ID=Physo137672;Parent=Physo137672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 199988 199995 . + 0 ID=Physo137672;Parent=Physo137672;rank=1 scaffold_56 . exon 199988 199995 . + . ID=Physo137672.1;Parent=Physo137672;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 200266 200605 . + 0 ID=Physo137672;Parent=Physo137672;rank=2 scaffold_56 . exon 200266 200605 . + . ID=Physo137672.2;Parent=Physo137672;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 ensembl protein_coding_gene 200909 201790 . + . ID=Physo137673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560047;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 200909 201790 . + . ID=Physo137673;Parent=Physo137673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 200909 201790 . + 0 ID=Physo137673;Parent=Physo137673;rank=1 scaffold_56 . exon 200909 201790 . + . ID=Physo137673.1;Parent=Physo137673;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 202674 203513 . - . ID=Physo137674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560048;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 202674 203513 . - . ID=Physo137674;Parent=Physo137674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 202674 203386 . - 0 ID=Physo137674;Parent=Physo137674;rank=2 scaffold_56 . exon 202674 203386 . - . ID=Physo137674.2;Parent=Physo137674;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 203459 203513 . - 0 ID=Physo137674;Parent=Physo137674;rank=1 scaffold_56 . exon 203459 203513 . - . ID=Physo137674.1;Parent=Physo137674;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 203677 206098 . - . ID=Physo137675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560049;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 203677 206098 . - . ID=Physo137675;Parent=Physo137675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 203677 203988 . - 0 ID=Physo137675;Parent=Physo137675;rank=6 scaffold_56 . exon 203677 203988 . - . ID=Physo137675.6;Parent=Physo137675;constitutive=1;rank=6 scaffold_56 . CDS 204069 204691 . - 0 ID=Physo137675;Parent=Physo137675;rank=5 scaffold_56 . exon 204069 204691 . - . ID=Physo137675.5;Parent=Physo137675;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 . CDS 204778 204989 . - 0 ID=Physo137675;Parent=Physo137675;rank=4 scaffold_56 . exon 204778 204989 . - . ID=Physo137675.4;Parent=Physo137675;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_56 . CDS 205258 205565 . - 0 ID=Physo137675;Parent=Physo137675;rank=3 scaffold_56 . exon 205258 205565 . - . ID=Physo137675.3;Parent=Physo137675;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_56 . CDS 205635 205868 . - 0 ID=Physo137675;Parent=Physo137675;rank=2 scaffold_56 . exon 205635 205868 . - . ID=Physo137675.2;Parent=Physo137675;constitutive=1;rank=2 scaffold_56 . CDS 205892 206098 . - 0 ID=Physo137675;Parent=Physo137675;rank=1 scaffold_56 . exon 205892 206098 . - . ID=Physo137675.1;Parent=Physo137675;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 207171 208691 . - . ID=Physo137676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560050;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 207171 208691 . - . ID=Physo137676;Parent=Physo137676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 207171 208691 . - 0 ID=Physo137676;Parent=Physo137676;rank=1 scaffold_56 . exon 207171 208691 . - . ID=Physo137676.1;Parent=Physo137676;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 209252 210043 . - . ID=Physo137677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560051;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 209252 210043 . - . ID=Physo137677;Parent=Physo137677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 209252 210043 . - 0 ID=Physo137677;Parent=Physo137677;rank=1 scaffold_56 . exon 209252 210043 . - . ID=Physo137677.1;Parent=Physo137677;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 211269 212768 . - . ID=Physo137678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560052;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 211269 212768 . - . ID=Physo137678;Parent=Physo137678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 211269 211987 . - 0 ID=Physo137678;Parent=Physo137678;rank=2 scaffold_56 . exon 211269 211987 . - . ID=Physo137678.2;Parent=Physo137678;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 212135 212768 . - 0 ID=Physo137678;Parent=Physo137678;rank=1 scaffold_56 . exon 212135 212768 . - . ID=Physo137678.1;Parent=Physo137678;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 213256 214713 . + . ID=Physo157670;biotype=protein_coding;external_name=C_scaffold_56000010;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 213256 214713 . + . ID=Physo157670;Parent=Physo157670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 213256 214713 . + 0 ID=Physo157670;Parent=Physo157670;rank=1 scaffold_56 . exon 213256 214713 . + . ID=Physo157670.1;Parent=Physo157670;constitutive=1;rank=1 scaffold_56 . repeat_region 220690 220703 . ? . description=dust scaffold_56 . repeat_region 220920 220950 . ? . description=trf scaffold_56 . repeat_region 220920 220956 . ? . description=trf scaffold_56 . biological_region 221227 221227 0.999 - . logic_name=eponine scaffold_56 . biological_region 221316 221317 0.999 - . logic_name=eponine scaffold_56 . repeat_region 221408 221434 . ? . description=dust scaffold_56 . repeat_region 221408 221434 . ? . description=trf scaffold_56 . biological_region 221604 221607 0.999 - . logic_name=eponine scaffold_56 . biological_region 221771 221777 0.999 - . logic_name=eponine scaffold_56 . repeat_region 222286 222325 . ? . description=dust scaffold_56 . repeat_region 222294 222319 . ? . description=trf scaffold_56 . biological_region 224812 224815 0.999 + . logic_name=eponine scaffold_56 ensembl protein_coding_gene 220403 223810 . + . ID=Physo137680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560054;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 220403 223810 . + . ID=Physo137680;Parent=Physo137680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 220403 220625 . + 0 ID=Physo137680;Parent=Physo137680;rank=1 scaffold_56 . exon 220403 220625 . + . ID=Physo137680.1;Parent=Physo137680;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 220784 222526 . + 0 ID=Physo137680;Parent=Physo137680;rank=2 scaffold_56 . exon 220784 222526 . + . ID=Physo137680.2;Parent=Physo137680;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 222838 223034 . + 0 ID=Physo137680;Parent=Physo137680;rank=3 scaffold_56 . exon 222838 223034 . + . ID=Physo137680.3;Parent=Physo137680;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 223085 223354 . + 0 ID=Physo137680;Parent=Physo137680;rank=4 scaffold_56 . exon 223085 223354 . + . ID=Physo137680.4;Parent=Physo137680;constitutive=1;rank=4 scaffold_56 . CDS 223389 223673 . + 0 ID=Physo137680;Parent=Physo137680;rank=5 scaffold_56 . exon 223389 223810 . + . ID=Physo137680.5;Parent=Physo137680;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_56 ensembl protein_coding_gene 224208 225407 . + . ID=Physo137681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560055;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 224208 225407 . + . ID=Physo137681;Parent=Physo137681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 224208 225407 . + 0 ID=Physo137681;Parent=Physo137681;rank=1 scaffold_56 . exon 224208 225407 . + . ID=Physo137681.1;Parent=Physo137681;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 230347 230742 . + . ID=Physo137682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560056;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 230347 230742 . + . ID=Physo137682;Parent=Physo137682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 230347 230742 . + 0 ID=Physo137682;Parent=Physo137682;rank=1 scaffold_56 . exon 230347 230742 . + . ID=Physo137682.1;Parent=Physo137682;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 232212 233556 . + . ID=Physo137683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560057;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 232212 233556 . + . ID=Physo137683;Parent=Physo137683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 232212 232931 . + 0 ID=Physo137683;Parent=Physo137683;rank=1 scaffold_56 . exon 232212 232931 . + . ID=Physo137683.1;Parent=Physo137683;constitutive=1;rank=1 scaffold_56 . CDS 233068 233556 . + 0 ID=Physo137683;Parent=Physo137683;rank=2 scaffold_56 . exon 233068 233556 . + . ID=Physo137683.2;Parent=Physo137683;constitutive=1;rank=2 scaffold_56 ensembl protein_coding_gene 235055 240451 . + . ID=Physo137684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560058;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 235055 240451 . + . ID=Physo137684;Parent=Physo137684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 235055 235150 . + . ID=Physo137684.1;Parent=Physo137684;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_56 . CDS 235083 235150 . + 0 ID=Physo137684;Parent=Physo137684;rank=1 scaffold_56 . CDS 235313 235979 . + 0 ID=Physo137684;Parent=Physo137684;rank=2 scaffold_56 . exon 235313 235979 . + . ID=Physo137684.2;Parent=Physo137684;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 236268 236363 . + 0 ID=Physo137684;Parent=Physo137684;rank=3 scaffold_56 . CDS 236791 236823 . + 0 ID=Physo137684;Parent=Physo137684;rank=4 scaffold_56 . CDS 236856 238159 . + 0 ID=Physo137684;Parent=Physo137684;rank=5 scaffold_56 . CDS 238207 239582 . + 0 ID=Physo137684;Parent=Physo137684;rank=6 scaffold_56 . CDS 240008 240219 . + 0 ID=Physo137684;Parent=Physo137684;rank=7 scaffold_56 . repeat_region 241507 241633 . + . description=(CAG)n scaffold_56 . repeat_region 241530 241602 . ? . description=trf scaffold_56 . repeat_region 241535 241595 . ? . description=trf scaffold_56 . repeat_region 241547 241585 . ? . description=trf scaffold_56 . biological_region 243090 243095 0.999 + . logic_name=eponine scaffold_56 . biological_region 243542 243546 0.999 + . logic_name=eponine scaffold_56 . biological_region 243602 243605 0.999 + . logic_name=eponine scaffold_56 . biological_region 243687 243695 0.999 - . logic_name=eponine scaffold_56 . biological_region 243786 243793 0.999 - . logic_name=eponine scaffold_56 . repeat_region 244020 244058 . ? . description=dust scaffold_56 . biological_region 244326 244328 0.999 - . logic_name=eponine scaffold_56 . biological_region 244420 244421 0.999 + . logic_name=eponine scaffold_56 . repeat_region 244956 245003 . ? . description=dust scaffold_56 . biological_region 245426 245429 0.999 + . logic_name=eponine scaffold_56 . exon 236268 236363 . + . ID=Physo137684.3;Parent=Physo137684;constitutive=1;rank=3 scaffold_56 . exon 236791 236823 . + . ID=Physo137684.4;Parent=Physo137684;constitutive=1;rank=4 scaffold_56 . exon 236856 238159 . + . ID=Physo137684.5;Parent=Physo137684;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_56 . exon 238207 239582 . + . ID=Physo137684.6;Parent=Physo137684;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_56 . exon 240008 240451 . + . ID=Physo137684.7;Parent=Physo137684;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_56 ensembl protein_coding_gene 243356 243802 . + . ID=Physo137685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560059;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 243356 243802 . + . ID=Physo137685;Parent=Physo137685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 243356 243802 . + 0 ID=Physo137685;Parent=Physo137685;rank=1 scaffold_56 . exon 243356 243802 . + . ID=Physo137685.1;Parent=Physo137685;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 244066 244959 . + . ID=Physo137686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560060;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 244066 244959 . + . ID=Physo137686;Parent=Physo137686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 244066 244959 . + 0 ID=Physo137686;Parent=Physo137686;rank=1 scaffold_56 . exon 244066 244959 . + . ID=Physo137686.1;Parent=Physo137686;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 245094 246859 . - . ID=Physo137687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560061;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 245094 246859 . - . ID=Physo137687;Parent=Physo137687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 245094 246377 . - 0 ID=Physo137687;Parent=Physo137687;rank=2 scaffold_56 . exon 245094 246377 . - . ID=Physo137687.2;Parent=Physo137687;constitutive=1;rank=2 scaffold_56 . CDS 246815 246859 . - 0 ID=Physo137687;Parent=Physo137687;rank=1 scaffold_56 . exon 246815 246859 . - . ID=Physo137687.1;Parent=Physo137687;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 255298 258091 . - . ID=Physo137688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560062;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 255298 258091 . - . ID=Physo137688;Parent=Physo137688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 255298 255362 . - 0 ID=Physo137688;Parent=Physo137688;rank=2 scaffold_56 . exon 255298 255362 . - . ID=Physo137688.2;Parent=Physo137688;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 255529 258091 . - 0 ID=Physo137688;Parent=Physo137688;rank=1 scaffold_56 . exon 255529 258091 . - . ID=Physo137688.1;Parent=Physo137688;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . biological_region 256231 256234 0.999 + . logic_name=eponine scaffold_56 . biological_region 256281 256285 0.999 - . logic_name=eponine scaffold_56 . biological_region 256336 256339 0.999 + . logic_name=eponine scaffold_56 . biological_region 256356 256360 0.999 - . logic_name=eponine scaffold_56 . biological_region 256407 256409 0.999 - . logic_name=eponine scaffold_56 . repeat_region 256421 256463 . ? . description=trf scaffold_56 . biological_region 256663 256666 0.999 + . logic_name=eponine scaffold_56 . biological_region 258127 258127 0.999 - . logic_name=eponine scaffold_56 . repeat_region 258324 258393 . ? . description=trf scaffold_56 . biological_region 258393 258395 0.999 - . logic_name=eponine scaffold_56 . repeat_region 258521 260010 . - . description=Polinton-1_PI scaffold_56 . repeat_region 260012 260162 . - . description=Polinton-1_PI scaffold_56 . repeat_region 260355 263944 . - . description=Polinton-1_PI scaffold_56 . repeat_region 265009 265293 . - . description=Polinton-1_PI scaffold_56 . repeat_region 265299 265334 . + . description=Polinton-1_PI scaffold_56 ensembl protein_coding_gene 262099 263262 . - . ID=Physo137689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560063;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 262099 263262 . - . ID=Physo137689;Parent=Physo137689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 262099 263262 . - 0 ID=Physo137689;Parent=Physo137689;rank=1 scaffold_56 . exon 262099 263262 . - . ID=Physo137689.1;Parent=Physo137689;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 264934 267889 . - . ID=Physo157673;biotype=protein_coding;external_name=C_scaffold_56000013;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 264934 267889 . - . ID=Physo157673;Parent=Physo157673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 264934 265191 . - 0 ID=Physo157673;Parent=Physo157673;rank=6 scaffold_56 . exon 264934 265191 . - . ID=Physo157673.6;Parent=Physo157673;constitutive=1;rank=6 scaffold_56 . CDS 265994 266386 . - 0 ID=Physo157673;Parent=Physo157673;rank=5 scaffold_56 . CDS 266660 266903 . - 0 ID=Physo157673;Parent=Physo157673;rank=4 scaffold_56 . CDS 267003 267055 . - 0 ID=Physo157673;Parent=Physo157673;rank=3 scaffold_56 . CDS 267161 267288 . - 0 ID=Physo157673;Parent=Physo157673;rank=2 scaffold_56 . CDS 267346 267889 . - 0 ID=Physo157673;Parent=Physo157673;rank=1 scaffold_56 . repeat_region 270585 270970 . ? . description=dust scaffold_56 . repeat_region 271203 271210 . ? . description=dust scaffold_56 ensembl protein_coding_gene 273288 275324 . - . ID=Physo137693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560067;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 273288 275324 . - . ID=Physo137693;Parent=Physo137693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 273288 274265 . - 0 ID=Physo137693;Parent=Physo137693;rank=4 scaffold_56 . exon 273288 274265 . - . ID=Physo137693.4;Parent=Physo137693;constitutive=1;rank=4 scaffold_56 . CDS 274629 275108 . - 0 ID=Physo137693;Parent=Physo137693;rank=3 scaffold_56 . exon 274629 275108 . - . ID=Physo137693.3;Parent=Physo137693;constitutive=1;rank=3 scaffold_56 . CDS 275131 275228 . - 0 ID=Physo137693;Parent=Physo137693;rank=2 scaffold_56 . exon 275131 275228 . - . ID=Physo137693.2;Parent=Physo137693;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 275300 275324 . - 0 ID=Physo137693;Parent=Physo137693;rank=1 scaffold_56 . exon 275300 275324 . - . ID=Physo137693.1;Parent=Physo137693;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . exon 265994 266386 . - . ID=Physo157673.5;Parent=Physo157673;constitutive=1;rank=5 scaffold_56 . exon 266660 266903 . - . ID=Physo157673.4;Parent=Physo157673;constitutive=1;ensembl_phase=2;rank=4 scaffold_56 . exon 267003 267055 . - . ID=Physo157673.3;Parent=Physo157673;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_56 . exon 267161 267288 . - . ID=Physo157673.2;Parent=Physo157673;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . exon 267346 267889 . - . ID=Physo157673.1;Parent=Physo157673;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 268350 271170 . - . ID=Physo157676;biotype=protein_coding;external_name=C_scaffold_56000016;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 268350 271170 . - . ID=Physo157676;Parent=Physo157676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 268350 270581 . - 0 ID=Physo157676;Parent=Physo157676;rank=2 scaffold_56 . exon 268350 270581 . - . ID=Physo157676.2;Parent=Physo157676;constitutive=1;rank=2 scaffold_56 . CDS 270973 271170 . - 0 ID=Physo157676;Parent=Physo157676;rank=1 scaffold_56 . exon 270973 271170 . - . ID=Physo157676.1;Parent=Physo157676;constitutive=1;rank=1 scaffold_56 . repeat_region 278200 278430 . - . description=Sola3-3_PS scaffold_56 . biological_region 280346 280347 0.999 + . logic_name=eponine scaffold_56 . biological_region 281982 281987 0.999 + . logic_name=eponine scaffold_56 . biological_region 282052 282063 0.999 + . logic_name=eponine scaffold_56 . biological_region 282116 282120 0.999 + . logic_name=eponine scaffold_56 . repeat_region 283082 283117 . ? . description=trf scaffold_56 ensembl protein_coding_gene 276069 277712 . - . ID=Physo137694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560068;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 276069 277712 . - . ID=Physo137694;Parent=Physo137694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 276069 277712 . - . ID=Physo137694.1;Parent=Physo137694;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_56 . CDS 276144 277712 . - 0 ID=Physo137694;Parent=Physo137694;rank=1 scaffold_56 ensembl protein_coding_gene 278950 280527 . - . ID=Physo137695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560069;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 278950 280527 . - . ID=Physo137695;Parent=Physo137695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 278950 280527 . - 0 ID=Physo137695;Parent=Physo137695;rank=1 scaffold_56 . exon 278950 280527 . - . ID=Physo137695.1;Parent=Physo137695;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 284140 288734 . + . ID=Physo137696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560070;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 284140 288734 . + . ID=Physo137696;Parent=Physo137696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 284140 284458 . + 0 ID=Physo137696;Parent=Physo137696;rank=1 scaffold_56 . exon 284140 284458 . + . ID=Physo137696.1;Parent=Physo137696;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 285814 286333 . + 0 ID=Physo137696;Parent=Physo137696;rank=2 scaffold_56 . CDS 286391 287123 . + 0 ID=Physo137696;Parent=Physo137696;rank=3 scaffold_56 . CDS 287250 287606 . + 0 ID=Physo137696;Parent=Physo137696;rank=4 scaffold_56 . CDS 287676 288734 . + 0 ID=Physo137696;Parent=Physo137696;rank=5 scaffold_56 . repeat_region 284511 285763 . ? . description=dust scaffold_56 ensembl protein_coding_gene 289011 289380 . + . ID=Physo118718;biotype=protein_coding;external_name=estExt_Genewise1.C_560001;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 289011 289380 . + . ID=Physo118718;Parent=Physo118718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 289011 289380 . + . ID=Physo118718.1;Parent=Physo118718;constitutive=1;ensembl_phase=-1;rank=1 scaffold_56 . CDS 289138 289380 . + 0 ID=Physo118718;Parent=Physo118718;rank=1 scaffold_56 . exon 285814 286333 . + . ID=Physo137696.2;Parent=Physo137696;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_56 . exon 286391 287123 . + . ID=Physo137696.3;Parent=Physo137696;constitutive=1;ensembl_phase=2;rank=3 scaffold_56 . exon 287250 287606 . + . ID=Physo137696.4;Parent=Physo137696;constitutive=1;rank=4 scaffold_56 . exon 287676 288734 . + . ID=Physo137696.5;Parent=Physo137696;constitutive=1;rank=5 scaffold_56 ensembl protein_coding_gene 289795 292540 . + . ID=Physo137697;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560071;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 289795 292540 . + . ID=Physo137697;Parent=Physo137697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 289795 289872 . + 0 ID=Physo137697;Parent=Physo137697;rank=1 scaffold_56 . exon 289795 289872 . + . ID=Physo137697.1;Parent=Physo137697;constitutive=1;rank=1 scaffold_56 . CDS 290044 290208 . + 0 ID=Physo137697;Parent=Physo137697;rank=2 scaffold_56 . exon 290044 290208 . + . ID=Physo137697.2;Parent=Physo137697;constitutive=1;rank=2 scaffold_56 . CDS 290276 290964 . + 0 ID=Physo137697;Parent=Physo137697;rank=3 scaffold_56 . exon 290276 290964 . + . ID=Physo137697.3;Parent=Physo137697;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_56 . CDS 291015 291793 . + 0 ID=Physo137697;Parent=Physo137697;rank=4 scaffold_56 . exon 291015 291793 . + . ID=Physo137697.4;Parent=Physo137697;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_56 . CDS 291882 291910 . + 0 ID=Physo137697;Parent=Physo137697;rank=5 scaffold_56 . exon 291882 291910 . + . ID=Physo137697.5;Parent=Physo137697;constitutive=1;ensembl_phase=1;rank=5 scaffold_56 . CDS 291951 292265 . + 0 ID=Physo137697;Parent=Physo137697;rank=6 scaffold_56 . exon 291951 292265 . + . ID=Physo137697.6;Parent=Physo137697;constitutive=1;rank=6 scaffold_56 . CDS 292313 292540 . + 0 ID=Physo137697;Parent=Physo137697;rank=7 scaffold_56 . exon 292313 292540 . + . ID=Physo137697.7;Parent=Physo137697;constitutive=1;rank=7 scaffold_56 ensembl protein_coding_gene 293606 295705 . - . ID=Physo137698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560072;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 293606 295705 . - . ID=Physo137698;Parent=Physo137698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 293606 295705 . - 0 ID=Physo137698;Parent=Physo137698;rank=1 scaffold_56 . exon 293606 295705 . - . ID=Physo137698.1;Parent=Physo137698;constitutive=1;rank=1 scaffold_56 . biological_region 297477 297477 0.999 + . logic_name=eponine scaffold_56 . biological_region 297597 297599 0.999 - . logic_name=eponine scaffold_56 . biological_region 297965 297967 0.999 + . logic_name=eponine scaffold_56 . biological_region 298864 298869 0.999 - . logic_name=eponine scaffold_56 . biological_region 299352 299354 0.999 + . logic_name=eponine scaffold_56 . biological_region 304291 304294 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 296142 299967 . - . ID=Physo137699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560073;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 296142 299967 . - . ID=Physo137699;Parent=Physo137699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 296142 296922 . - 0 ID=Physo137699;Parent=Physo137699;rank=2 scaffold_56 . exon 296142 296922 . - . ID=Physo137699.2;Parent=Physo137699;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 296993 299967 . - 0 ID=Physo137699;Parent=Physo137699;rank=1 scaffold_56 . exon 296993 299967 . - . ID=Physo137699.1;Parent=Physo137699;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 ensembl protein_coding_gene 302543 303115 . - . ID=Physo137700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560074;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 302543 303115 . - . ID=Physo137700;Parent=Physo137700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 302543 303115 . - 0 ID=Physo137700;Parent=Physo137700;rank=1 scaffold_56 . exon 302543 303115 . - . ID=Physo137700.1;Parent=Physo137700;constitutive=1;rank=1 scaffold_56 . repeat_region 307345 307357 . ? . description=dust scaffold_56 . repeat_region 308658 308666 . ? . description=dust scaffold_56 . repeat_region 311260 311808 . + . description=GypsyPi-1c_I-int scaffold_56 . repeat_region 311935 312235 . ? . description=trf scaffold_56 . repeat_region 312658 315595 . + . description=GypsyPi-1c_I-int scaffold_56 ensembl protein_coding_gene 314699 315097 . + . ID=Physo109067;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_560005;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 314699 315097 . + . ID=Physo109067;Parent=Physo109067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 314699 315097 . + 0 ID=Physo109067;Parent=Physo109067;rank=1 scaffold_56 . exon 314699 315097 . + . ID=Physo109067.1;Parent=Physo109067;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 310453 314562 . + . ID=Physo137701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560075;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 310453 314562 . + . ID=Physo137701;Parent=Physo137701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 310453 311248 . + 0 ID=Physo137701;Parent=Physo137701;rank=1 scaffold_56 . exon 310453 311248 . + . ID=Physo137701.1;Parent=Physo137701;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 311410 311962 . + 0 ID=Physo137701;Parent=Physo137701;rank=2 scaffold_56 . exon 311410 311962 . + . ID=Physo137701.2;Parent=Physo137701;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_56 . CDS 312345 314562 . + 0 ID=Physo137701;Parent=Physo137701;rank=3 scaffold_56 . exon 312345 314562 . + . ID=Physo137701.3;Parent=Physo137701;constitutive=1;ensembl_phase=2;rank=3 scaffold_56 . biological_region 315033 315038 0.999 + . logic_name=eponine scaffold_56 . biological_region 316808 316810 0.999 - . logic_name=eponine scaffold_56 . biological_region 316863 316867 0.999 + . logic_name=eponine scaffold_56 . biological_region 317118 317127 0.999 + . logic_name=eponine scaffold_56 . biological_region 317232 317233 0.999 + . logic_name=eponine scaffold_56 . biological_region 317251 317259 0.999 + . logic_name=eponine scaffold_56 . biological_region 319189 319193 0.999 - . logic_name=eponine scaffold_56 . biological_region 321107 321110 0.999 - . logic_name=eponine scaffold_56 . biological_region 321161 321163 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 315576 317651 . - . ID=Physo137703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560077;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 315576 317651 . - . ID=Physo137703;Parent=Physo137703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 315576 316487 . - 0 ID=Physo137703;Parent=Physo137703;rank=2 scaffold_56 . exon 315576 316487 . - . ID=Physo137703.2;Parent=Physo137703;constitutive=1;rank=2 scaffold_56 . CDS 316524 317651 . - 0 ID=Physo137703;Parent=Physo137703;rank=1 scaffold_56 . exon 316524 317651 . - . ID=Physo137703.1;Parent=Physo137703;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 323954 324520 . - . ID=Physo137704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560078;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 323954 324520 . - . ID=Physo137704;Parent=Physo137704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 323954 324115 . - 0 ID=Physo137704;Parent=Physo137704;rank=2 scaffold_56 . exon 323954 324115 . - . ID=Physo137704.2;Parent=Physo137704;constitutive=1;rank=2 scaffold_56 . CDS 324173 324520 . - 0 ID=Physo137704;Parent=Physo137704;rank=1 scaffold_56 . exon 324173 324520 . - . ID=Physo137704.1;Parent=Physo137704;constitutive=1;rank=1 scaffold_56 . repeat_region 329083 329154 . ? . description=trf scaffold_56 . repeat_region 330015 330096 . ? . description=trf scaffold_56 . repeat_region 333452 333459 . ? . description=dust scaffold_56 ensembl protein_coding_gene 326722 328810 . - . ID=Physo118724;biotype=protein_coding;external_name=estExt_Genewise1.C_560007;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 326722 328810 . - . ID=Physo118724;Parent=Physo118724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 326722 327171 . - . ID=Physo118724.2;Parent=Physo118724;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_56 . CDS 326816 327171 . - 0 ID=Physo118724;Parent=Physo118724;rank=2 scaffold_56 . CDS 328578 328734 . - 0 ID=Physo118724;Parent=Physo118724;rank=1 scaffold_56 . exon 328578 328810 . - . ID=Physo118724.1;Parent=Physo118724;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_56 ensembl protein_coding_gene 333236 333409 . - . ID=Physo118727;biotype=protein_coding;external_name=estExt_Genewise1.C_560010;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 333236 333409 . - . ID=Physo118727;Parent=Physo118727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 333236 333331 . - 0 ID=Physo118727;Parent=Physo118727;rank=1 scaffold_56 . exon 333236 333409 . - . ID=Physo118727.1;Parent=Physo118727;constitutive=1;ensembl_phase=-1;rank=1 scaffold_56 ensembl protein_coding_gene 324737 325853 . - . ID=Physo137705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560079;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 324737 325853 . - . ID=Physo137705;Parent=Physo137705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 324737 325139 . - 0 ID=Physo137705;Parent=Physo137705;rank=2 scaffold_56 . exon 324737 325139 . - . ID=Physo137705.2;Parent=Physo137705;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 325195 325853 . - 0 ID=Physo137705;Parent=Physo137705;rank=1 scaffold_56 . exon 325195 325853 . - . ID=Physo137705.1;Parent=Physo137705;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . biological_region 336400 336401 0.999 + . logic_name=eponine scaffold_56 . biological_region 337820 337822 0.999 - . logic_name=eponine scaffold_56 . biological_region 339052 339055 0.999 + . logic_name=eponine scaffold_56 . biological_region 339127 339130 0.999 - . logic_name=eponine scaffold_56 . biological_region 339129 339136 0.999 + . logic_name=eponine scaffold_56 . biological_region 339157 339163 0.999 + . logic_name=eponine scaffold_56 . biological_region 339180 339190 0.999 + . logic_name=eponine scaffold_56 . biological_region 339213 339218 0.999 + . logic_name=eponine scaffold_56 . biological_region 339221 339233 0.999 - . logic_name=eponine scaffold_56 . biological_region 339224 339224 0.999 + . logic_name=eponine scaffold_56 . biological_region 339245 339249 0.999 + . logic_name=eponine scaffold_56 . biological_region 339247 339255 0.999 - . logic_name=eponine scaffold_56 . biological_region 339271 339273 0.999 - . logic_name=eponine scaffold_56 . biological_region 339290 339291 0.999 - . logic_name=eponine scaffold_56 . biological_region 339307 339310 0.999 + . logic_name=eponine scaffold_56 . biological_region 339326 339330 0.999 + . logic_name=eponine scaffold_56 ensembl protein_coding_gene 335940 337213 . + . ID=Physo137707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560081;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 335940 337213 . + . ID=Physo137707;Parent=Physo137707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 335940 336449 . + 0 ID=Physo137707;Parent=Physo137707;rank=1 scaffold_56 . exon 335940 336449 . + . ID=Physo137707.1;Parent=Physo137707;constitutive=1;rank=1 scaffold_56 . CDS 336524 337213 . + 0 ID=Physo137707;Parent=Physo137707;rank=2 scaffold_56 . exon 336524 337213 . + . ID=Physo137707.2;Parent=Physo137707;constitutive=1;rank=2 scaffold_56 ensembl protein_coding_gene 337350 339398 . - . ID=Physo137708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560082;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 337350 339398 . - . ID=Physo137708;Parent=Physo137708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 337350 339398 . - 0 ID=Physo137708;Parent=Physo137708;rank=1 scaffold_56 . exon 337350 339398 . - . ID=Physo137708.1;Parent=Physo137708;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 342229 342822 . + . ID=Physo137709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560083;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 342229 342822 . + . ID=Physo137709;Parent=Physo137709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 342229 342822 . + 0 ID=Physo137709;Parent=Physo137709;rank=1 scaffold_56 . exon 342229 342822 . + . ID=Physo137709.1;Parent=Physo137709;constitutive=1;rank=1 scaffold_56 . repeat_region 346533 346552 . ? . description=trf scaffold_56 . repeat_region 350799 350838 . ? . description=dust scaffold_56 . repeat_region 351672 351721 . ? . description=dust scaffold_56 . repeat_region 352130 352157 . ? . description=dust scaffold_56 . repeat_region 352130 352157 . ? . description=trf scaffold_56 . repeat_region 352307 353075 . - . description=GypsyPi-1c_I-int scaffold_56 . repeat_region 353321 353387 . - . description=GypsyPi-1c_I-int scaffold_56 . repeat_region 353388 353437 . ? . description=dust scaffold_56 ensembl protein_coding_gene 348108 348377 . + . ID=Physo118728;biotype=protein_coding;external_name=estExt_Genewise1.C_560011;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 348108 348377 . + . ID=Physo118728;Parent=Physo118728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 348108 348377 . + . ID=Physo118728.1;Parent=Physo118728;constitutive=1;ensembl_phase=-1;rank=1 scaffold_56 . CDS 348147 348377 . + 0 ID=Physo118728;Parent=Physo118728;rank=1 scaffold_56 ensembl protein_coding_gene 345345 346058 . + . ID=Physo137710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560084;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 345345 346058 . + . ID=Physo137710;Parent=Physo137710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 345345 345596 . + 0 ID=Physo137710;Parent=Physo137710;rank=1 scaffold_56 . exon 345345 345596 . + . ID=Physo137710.1;Parent=Physo137710;constitutive=1;rank=1 scaffold_56 . CDS 345668 345967 . + 0 ID=Physo137710;Parent=Physo137710;rank=2 scaffold_56 . exon 345668 345967 . + . ID=Physo137710.2;Parent=Physo137710;constitutive=1;rank=2 scaffold_56 . CDS 346017 346058 . + 0 ID=Physo137710;Parent=Physo137710;rank=3 scaffold_56 . exon 346017 346058 . + . ID=Physo137710.3;Parent=Physo137710;constitutive=1;rank=3 scaffold_56 ensembl protein_coding_gene 351908 353243 . - . ID=Physo137711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560085;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 351908 353243 . - . ID=Physo137711;Parent=Physo137711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 351908 351914 . - 0 ID=Physo137711;Parent=Physo137711;rank=2 scaffold_56 . exon 351908 351914 . - . ID=Physo137711.2;Parent=Physo137711;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 351955 353243 . - 0 ID=Physo137711;Parent=Physo137711;rank=1 scaffold_56 . exon 351955 353243 . - . ID=Physo137711.1;Parent=Physo137711;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 ensembl protein_coding_gene 353647 354060 . + . ID=Physo137712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560086;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 353647 354060 . + . ID=Physo137712;Parent=Physo137712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 353647 354060 . + 0 ID=Physo137712;Parent=Physo137712;rank=1 scaffold_56 . exon 353647 354060 . + . ID=Physo137712.1;Parent=Physo137712;constitutive=1;rank=1 scaffold_56 . biological_region 354196 354200 0.999 - . logic_name=eponine scaffold_56 . biological_region 354559 354563 0.999 + . logic_name=eponine scaffold_56 . biological_region 356134 356136 0.999 + . logic_name=eponine scaffold_56 . biological_region 358067 358070 0.999 + . logic_name=eponine scaffold_56 . biological_region 358107 358108 0.999 + . logic_name=eponine scaffold_56 . biological_region 358133 358136 0.999 - . logic_name=eponine scaffold_56 . biological_region 358201 358206 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 354532 358248 . - . ID=Physo137713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560087;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 354532 358248 . - . ID=Physo137713;Parent=Physo137713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 354532 354655 . - 0 ID=Physo137713;Parent=Physo137713;rank=6 scaffold_56 . exon 354532 354655 . - . ID=Physo137713.6;Parent=Physo137713;constitutive=1;ensembl_phase=2;rank=6 scaffold_56 . CDS 354820 356141 . - 0 ID=Physo137713;Parent=Physo137713;rank=5 scaffold_56 . exon 354820 356141 . - . ID=Physo137713.5;Parent=Physo137713;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_56 . CDS 356169 356985 . - 0 ID=Physo137713;Parent=Physo137713;rank=4 scaffold_56 . exon 356169 356985 . - . ID=Physo137713.4;Parent=Physo137713;constitutive=1;ensembl_phase=2;rank=4 scaffold_56 . CDS 357033 357509 . - 0 ID=Physo137713;Parent=Physo137713;rank=3 scaffold_56 . exon 357033 357509 . - . ID=Physo137713.3;Parent=Physo137713;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_56 . CDS 357533 358121 . - 0 ID=Physo137713;Parent=Physo137713;rank=2 scaffold_56 . exon 357533 358121 . - . ID=Physo137713.2;Parent=Physo137713;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_56 . CDS 358176 358248 . - 0 ID=Physo137713;Parent=Physo137713;rank=1 scaffold_56 . exon 358176 358248 . - . ID=Physo137713.1;Parent=Physo137713;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . repeat_region 366456 366622 . ? . description=trf scaffold_56 . repeat_region 372560 372607 . ? . description=trf scaffold_56 ensembl protein_coding_gene 372551 374642 . + . ID=Physo137714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560088;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 372551 374642 . + . ID=Physo137714;Parent=Physo137714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 372551 372747 . + 0 ID=Physo137714;Parent=Physo137714;rank=1 scaffold_56 . exon 372551 372747 . + . ID=Physo137714.1;Parent=Physo137714;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 373061 373205 . + 0 ID=Physo137714;Parent=Physo137714;rank=2 scaffold_56 . exon 373061 373205 . + . ID=Physo137714.2;Parent=Physo137714;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 373290 374642 . + 0 ID=Physo137714;Parent=Physo137714;rank=3 scaffold_56 . exon 373290 374642 . + . ID=Physo137714.3;Parent=Physo137714;constitutive=1;rank=3 scaffold_56 . biological_region 374973 374976 0.999 + . logic_name=eponine scaffold_56 . biological_region 375000 375004 0.999 - . logic_name=eponine scaffold_56 . biological_region 375004 375009 0.999 + . logic_name=eponine scaffold_56 . biological_region 375057 375059 0.999 + . logic_name=eponine scaffold_56 . repeat_region 380416 380719 . - . description=GypsyPi-1c_LTR scaffold_56 . repeat_region 380720 381031 . - . description=GypsyPi-1c_I-int scaffold_56 . biological_region 380973 380976 0.999 + . logic_name=eponine scaffold_56 . biological_region 381172 381177 0.999 + . logic_name=eponine scaffold_56 . biological_region 381534 381537 0.999 + . logic_name=eponine scaffold_56 . repeat_region 381614 387346 . - . description=GypsyPi-1c_I-int scaffold_56 . biological_region 382941 382944 0.999 - . logic_name=eponine scaffold_56 . biological_region 382991 382994 0.999 - . logic_name=eponine scaffold_56 ensembl protein_coding_gene 380906 383100 . + . ID=Physo137715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560089;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 380906 383100 . + . ID=Physo137715;Parent=Physo137715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 380906 381855 . + 0 ID=Physo137715;Parent=Physo137715;rank=1 scaffold_56 . exon 380906 381855 . + . ID=Physo137715.1;Parent=Physo137715;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 382071 382294 . + 0 ID=Physo137715;Parent=Physo137715;rank=2 scaffold_56 . exon 382071 382294 . + . ID=Physo137715.2;Parent=Physo137715;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_56 . CDS 382540 382781 . + 0 ID=Physo137715;Parent=Physo137715;rank=3 scaffold_56 . exon 382540 382781 . + . ID=Physo137715.3;Parent=Physo137715;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 382903 383100 . + 0 ID=Physo137715;Parent=Physo137715;rank=4 scaffold_56 . exon 382903 383100 . + . ID=Physo137715.4;Parent=Physo137715;constitutive=1;rank=4 scaffold_56 ensembl protein_coding_gene 383328 386945 . - . ID=Physo137716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560090;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 383328 386945 . - . ID=Physo137716;Parent=Physo137716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 383328 383773 . - 0 ID=Physo137716;Parent=Physo137716;rank=4 scaffold_56 . exon 383328 383773 . - . ID=Physo137716.4;Parent=Physo137716;constitutive=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 383833 384419 . - 0 ID=Physo137716;Parent=Physo137716;rank=3 scaffold_56 . CDS 384449 385029 . - 0 ID=Physo137716;Parent=Physo137716;rank=2 scaffold_56 . CDS 385065 386945 . - 0 ID=Physo137716;Parent=Physo137716;rank=1 scaffold_56 . repeat_region 386282 386382 . ? . description=trf scaffold_56 . repeat_region 386365 386532 . ? . description=trf scaffold_56 . repeat_region 387347 387396 . ? . description=dust scaffold_56 . repeat_region 388456 388505 . ? . description=dust scaffold_56 . repeat_region 392682 392867 . ? . description=trf scaffold_56 . exon 383833 384419 . - . ID=Physo137716.3;Parent=Physo137716;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_56 . exon 384449 385029 . - . ID=Physo137716.2;Parent=Physo137716;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_56 . exon 385065 386945 . - . ID=Physo137716.1;Parent=Physo137716;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 388239 389200 . - . ID=Physo137717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560091;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 388239 389200 . - . ID=Physo137717;Parent=Physo137717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 388239 388243 . - 0 ID=Physo137717;Parent=Physo137717;rank=2 scaffold_56 . exon 388239 388243 . - . ID=Physo137717.2;Parent=Physo137717;constitutive=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 388543 389200 . - 0 ID=Physo137717;Parent=Physo137717;rank=1 scaffold_56 . exon 388543 389200 . - . ID=Physo137717.1;Parent=Physo137717;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . biological_region 395085 395089 0.999 - . logic_name=eponine scaffold_56 . biological_region 395140 395144 0.999 + . logic_name=eponine scaffold_56 . biological_region 395210 395211 0.999 - . logic_name=eponine scaffold_56 . biological_region 400524 400529 0.999 + . logic_name=eponine scaffold_56 . biological_region 400544 400549 0.999 - . logic_name=eponine scaffold_56 . biological_region 400601 400602 0.999 + . logic_name=eponine scaffold_56 . biological_region 400631 400637 0.999 - . logic_name=eponine scaffold_56 . biological_region 401334 401339 0.999 - . logic_name=eponine scaffold_56 . biological_region 401359 401362 0.999 - . logic_name=eponine scaffold_56 . biological_region 401489 401495 0.999 - . logic_name=eponine scaffold_56 . biological_region 401499 401504 0.999 + . logic_name=eponine scaffold_56 . biological_region 401520 401522 0.999 + . logic_name=eponine scaffold_56 . biological_region 401601 401603 0.999 - . logic_name=eponine scaffold_56 . biological_region 402951 402957 0.999 + . logic_name=eponine scaffold_56 ensembl protein_coding_gene 399586 401601 . - . ID=Physo137718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560092;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 399586 401601 . - . ID=Physo137718;Parent=Physo137718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 399586 401601 . - 0 ID=Physo137718;Parent=Physo137718;rank=1 scaffold_56 . exon 399586 401601 . - . ID=Physo137718.1;Parent=Physo137718;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 402545 404341 . - . ID=Physo137719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560093;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 402545 404341 . - . ID=Physo137719;Parent=Physo137719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 402545 402700 . - 0 ID=Physo137719;Parent=Physo137719;rank=2 scaffold_56 . exon 402545 402700 . - . ID=Physo137719.2;Parent=Physo137719;constitutive=1;rank=2 scaffold_56 . CDS 402779 404341 . - 0 ID=Physo137719;Parent=Physo137719;rank=1 scaffold_56 . exon 402779 404341 . - . ID=Physo137719.1;Parent=Physo137719;constitutive=1;rank=1 scaffold_56 . repeat_region 404970 404993 . ? . description=trf scaffold_56 . repeat_region 405293 405349 . ? . description=dust scaffold_56 . repeat_region 405298 405349 . ? . description=trf scaffold_56 . repeat_region 410228 410277 . ? . description=dust scaffold_56 ensembl protein_coding_gene 405722 407131 . - . ID=Physo118734;biotype=protein_coding;external_name=estExt_Genewise1.C_560017;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 405722 407131 . - . ID=Physo118734;Parent=Physo118734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 405722 407089 . - 0 ID=Physo118734;Parent=Physo118734;rank=1 scaffold_56 . exon 405722 407131 . - . ID=Physo118734.1;Parent=Physo118734;constitutive=1;ensembl_phase=-1;rank=1 scaffold_56 ensembl protein_coding_gene 404895 405458 . + . ID=Physo137720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560094;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 404895 405458 . + . ID=Physo137720;Parent=Physo137720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 404895 405458 . + 0 ID=Physo137720;Parent=Physo137720;rank=1 scaffold_56 . exon 404895 405458 . + . ID=Physo137720.1;Parent=Physo137720;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 407691 409967 . + . ID=Physo137722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560096;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 407691 409967 . + . ID=Physo137722;Parent=Physo137722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 407691 409967 . + 0 ID=Physo137722;Parent=Physo137722;rank=1 scaffold_56 . exon 407691 409967 . + . ID=Physo137722.1;Parent=Physo137722;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 410102 411523 . + . ID=Physo137723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560097;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 410102 411523 . + . ID=Physo137723;Parent=Physo137723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 410102 410218 . + 0 ID=Physo137723;Parent=Physo137723;rank=1 scaffold_56 . exon 410102 410218 . + . ID=Physo137723.1;Parent=Physo137723;constitutive=1;rank=1 scaffold_56 . CDS 410345 411523 . + 0 ID=Physo137723;Parent=Physo137723;rank=2 scaffold_56 . exon 410345 411523 . + . ID=Physo137723.2;Parent=Physo137723;constitutive=1;rank=2 scaffold_56 ensembl protein_coding_gene 412011 412754 . + . ID=Physo137724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560098;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 412011 412754 . + . ID=Physo137724;Parent=Physo137724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 412011 412408 . + 0 ID=Physo137724;Parent=Physo137724;rank=1 scaffold_56 . exon 412011 412408 . + . ID=Physo137724.1;Parent=Physo137724;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 412580 412754 . + 0 ID=Physo137724;Parent=Physo137724;rank=2 scaffold_56 . exon 412580 412754 . + . ID=Physo137724.2;Parent=Physo137724;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 . biological_region 419168 419169 0.999 + . logic_name=eponine scaffold_56 ensembl protein_coding_gene 419088 420369 . + . ID=Physo109069;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_560007;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 419088 420369 . + . ID=Physo109069;Parent=Physo109069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . exon 419088 419668 . + . ID=Physo109069.1;Parent=Physo109069;constitutive=1;ensembl_phase=-1;rank=1 scaffold_56 . CDS 419123 419668 . + 0 ID=Physo109069;Parent=Physo109069;rank=1 scaffold_56 . CDS 419749 420288 . + 0 ID=Physo109069;Parent=Physo109069;rank=2 scaffold_56 . exon 419749 420369 . + . ID=Physo109069.2;Parent=Physo109069;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_56 ensembl protein_coding_gene 413449 414696 . + . ID=Physo137725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560099;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 413449 414696 . + . ID=Physo137725;Parent=Physo137725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 413449 414696 . + 0 ID=Physo137725;Parent=Physo137725;rank=1 scaffold_56 . exon 413449 414696 . + . ID=Physo137725.1;Parent=Physo137725;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 415928 417671 . + . ID=Physo137726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560100;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 415928 417671 . + . ID=Physo137726;Parent=Physo137726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 415928 416103 . + 0 ID=Physo137726;Parent=Physo137726;rank=1 scaffold_56 . exon 415928 416103 . + . ID=Physo137726.1;Parent=Physo137726;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_56 . CDS 416186 417671 . + 0 ID=Physo137726;Parent=Physo137726;rank=2 scaffold_56 . exon 416186 417671 . + . ID=Physo137726.2;Parent=Physo137726;constitutive=1;ensembl_phase=2;rank=2 scaffold_56 ensembl protein_coding_gene 417828 418247 . - . ID=Physo137727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560101;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 417828 418247 . - . ID=Physo137727;Parent=Physo137727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 417828 418247 . - 0 ID=Physo137727;Parent=Physo137727;rank=1 scaffold_56 . exon 417828 418247 . - . ID=Physo137727.1;Parent=Physo137727;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 420424 420873 . - . ID=Physo137729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560103;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 420424 420873 . - . ID=Physo137729;Parent=Physo137729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 420424 420873 . - 0 ID=Physo137729;Parent=Physo137729;rank=1 scaffold_56 . exon 420424 420873 . - . ID=Physo137729.1;Parent=Physo137729;constitutive=1;rank=1 scaffold_56 . repeat_region 425262 425270 . ? . description=dust scaffold_56 . repeat_region 426095 426200 . ? . description=trf scaffold_56 ensembl protein_coding_gene 428615 430048 . + . ID=Physo137730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560104;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 428615 430048 . + . ID=Physo137730;Parent=Physo137730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 428615 430048 . + 0 ID=Physo137730;Parent=Physo137730;rank=1 scaffold_56 . exon 428615 430048 . + . ID=Physo137730.1;Parent=Physo137730;constitutive=1;rank=1 scaffold_56 . biological_region 437718 437723 0.999 + . logic_name=eponine scaffold_56 . biological_region 437741 437746 0.999 - . logic_name=eponine scaffold_56 . biological_region 438191 438194 0.999 + . logic_name=eponine scaffold_56 ensembl protein_coding_gene 435604 437178 . + . ID=Physo137731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560105;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 435604 437178 . + . ID=Physo137731;Parent=Physo137731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 435604 437178 . + 0 ID=Physo137731;Parent=Physo137731;rank=1 scaffold_56 . exon 435604 437178 . + . ID=Physo137731.1;Parent=Physo137731;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 437526 442142 . + . ID=Physo137732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560106;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 437526 442142 . + . ID=Physo137732;Parent=Physo137732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 437526 437538 . + 0 ID=Physo137732;Parent=Physo137732;rank=1 scaffold_56 . exon 437526 437538 . + . ID=Physo137732.1;Parent=Physo137732;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 . CDS 437601 438359 . + 0 ID=Physo137732;Parent=Physo137732;rank=2 scaffold_56 . exon 437601 438359 . + . ID=Physo137732.2;Parent=Physo137732;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 438506 438925 . + 0 ID=Physo137732;Parent=Physo137732;rank=3 scaffold_56 . exon 438506 438925 . + . ID=Physo137732.3;Parent=Physo137732;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 439153 439313 . + 0 ID=Physo137732;Parent=Physo137732;rank=4 scaffold_56 . exon 439153 439313 . + . ID=Physo137732.4;Parent=Physo137732;constitutive=1;ensembl_phase=1;rank=4 scaffold_56 . CDS 439378 440007 . + 0 ID=Physo137732;Parent=Physo137732;rank=5 scaffold_56 . exon 439378 440007 . + . ID=Physo137732.5;Parent=Physo137732;constitutive=1;rank=5 scaffold_56 . CDS 440044 440154 . + 0 ID=Physo137732;Parent=Physo137732;rank=6 scaffold_56 . exon 440044 440154 . + . ID=Physo137732.6;Parent=Physo137732;constitutive=1;rank=6 scaffold_56 . CDS 440374 441005 . + 0 ID=Physo137732;Parent=Physo137732;rank=7 scaffold_56 . exon 440374 441005 . + . ID=Physo137732.7;Parent=Physo137732;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_56 . CDS 441078 441438 . + 0 ID=Physo137732;Parent=Physo137732;rank=8 scaffold_56 . exon 441078 441438 . + . ID=Physo137732.8;Parent=Physo137732;constitutive=1;ensembl_phase=2;rank=8 scaffold_56 . CDS 441508 441911 . + 0 ID=Physo137732;Parent=Physo137732;rank=9 scaffold_56 . exon 441508 441911 . + . ID=Physo137732.9;Parent=Physo137732;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_56 . CDS 442073 442142 . + 0 ID=Physo137732;Parent=Physo137732;rank=10 scaffold_56 . exon 442073 442142 . + . ID=Physo137732.10;Parent=Physo137732;constitutive=1;ensembl_phase=2;rank=10 scaffold_56 . repeat_region 446433 446466 . ? . description=trf scaffold_56 . repeat_region 448910 448922 . ? . description=dust scaffold_56 . repeat_region 449802 449821 . ? . description=trf scaffold_56 . repeat_region 449802 449821 . ? . description=dust scaffold_56 . repeat_region 451020 451068 . ? . description=trf scaffold_56 . repeat_region 452173 455622 . ? . description=dust scaffold_56 ensembl protein_coding_gene 444307 445743 . + . ID=Physo137733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560107;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 444307 445743 . + . ID=Physo137733;Parent=Physo137733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 444307 445743 . + 0 ID=Physo137733;Parent=Physo137733;rank=1 scaffold_56 . exon 444307 445743 . + . ID=Physo137733.1;Parent=Physo137733;constitutive=1;rank=1 scaffold_56 ensembl protein_coding_gene 445962 446888 . - . ID=Physo137734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560108;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 445962 446888 . - . ID=Physo137734;Parent=Physo137734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 445962 446281 . - 0 ID=Physo137734;Parent=Physo137734;rank=3 scaffold_56 . exon 445962 446281 . - . ID=Physo137734.3;Parent=Physo137734;constitutive=1;ensembl_phase=1;rank=3 scaffold_56 . CDS 446362 446418 . - 0 ID=Physo137734;Parent=Physo137734;rank=2 scaffold_56 . exon 446362 446418 . - . ID=Physo137734.2;Parent=Physo137734;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_56 . CDS 446771 446888 . - 0 ID=Physo137734;Parent=Physo137734;rank=1 scaffold_56 . exon 446771 446888 . - . ID=Physo137734.1;Parent=Physo137734;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_56 ensembl protein_coding_gene 461702 462145 . - . ID=Physo137735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_560109;logic_name=jgi_physo1_1 scaffold_56 ensembl transcript 461702 462145 . - . ID=Physo137735;Parent=Physo137735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_56 . CDS 461702 462145 . - 0 ID=Physo137735;Parent=Physo137735;rank=1 scaffold_56 . exon 461702 462145 . - . ID=Physo137735.1;Parent=Physo137735;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_52 1 462795 scaffold_52 . repeat_region 1034 5218 . ? . description=dust scaffold_52 . repeat_region 7405 8118 . ? . description=dust scaffold_52 . biological_region 8522 8529 0.999 + . logic_name=eponine scaffold_52 . biological_region 8597 8598 0.999 + . logic_name=eponine scaffold_52 . biological_region 8641 8645 0.999 - . logic_name=eponine scaffold_52 . biological_region 8666 8668 0.999 + . logic_name=eponine scaffold_52 . biological_region 8958 8962 0.999 + . logic_name=eponine scaffold_52 . biological_region 9011 9015 0.999 - . logic_name=eponine scaffold_52 . biological_region 9301 9303 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 8345 9501 . - . ID=Physo137211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520001;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 8345 9501 . - . ID=Physo137211;Parent=Physo137211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 8345 9275 . - . ID=Physo137211.2;Parent=Physo137211;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_52 . CDS 8450 9275 . - 0 ID=Physo137211;Parent=Physo137211;rank=2 scaffold_52 . CDS 9464 9501 . - 0 ID=Physo137211;Parent=Physo137211;rank=1 scaffold_52 . exon 9464 9501 . - . ID=Physo137211.1;Parent=Physo137211;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 10034 10534 . + . ID=Physo137212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520002;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 10034 10534 . + . ID=Physo137212;Parent=Physo137212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 10034 10153 . + 0 ID=Physo137212;Parent=Physo137212;rank=1 scaffold_52 . exon 10034 10153 . + . ID=Physo137212.1;Parent=Physo137212;constitutive=1;rank=1 scaffold_52 . CDS 10215 10276 . + 0 ID=Physo137212;Parent=Physo137212;rank=2 scaffold_52 . exon 10215 10276 . + . ID=Physo137212.2;Parent=Physo137212;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 10318 10534 . + 0 ID=Physo137212;Parent=Physo137212;rank=3 scaffold_52 . exon 10318 10534 . + . ID=Physo137212.3;Parent=Physo137212;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . repeat_region 13855 22877 . ? . description=dust scaffold_52 . repeat_region 24932 25654 . + . description=GypsyPi-1c_I-int scaffold_52 . repeat_region 25657 27256 . ? . description=dust scaffold_52 . biological_region 27434 27435 0.999 + . logic_name=eponine scaffold_52 . biological_region 27990 27993 0.999 + . logic_name=eponine scaffold_52 . biological_region 28036 28042 0.999 + . logic_name=eponine scaffold_52 . biological_region 28126 28128 0.999 - . logic_name=eponine scaffold_52 . biological_region 29108 29116 0.999 - . logic_name=eponine scaffold_52 . biological_region 29123 29126 0.999 + . logic_name=eponine scaffold_52 . biological_region 29135 29136 0.999 - . logic_name=eponine scaffold_52 . biological_region 29167 29169 0.999 + . logic_name=eponine scaffold_52 . biological_region 29253 29259 0.999 - . logic_name=eponine scaffold_52 . biological_region 29302 29305 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 28953 30756 . + . ID=Physo137213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520003;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 28953 30756 . + . ID=Physo137213;Parent=Physo137213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 28953 29165 . + 0 ID=Physo137213;Parent=Physo137213;rank=1 scaffold_52 . exon 28953 29165 . + . ID=Physo137213.1;Parent=Physo137213;constitutive=1;rank=1 scaffold_52 . CDS 29194 29510 . + 0 ID=Physo137213;Parent=Physo137213;rank=2 scaffold_52 . exon 29194 29510 . + . ID=Physo137213.2;Parent=Physo137213;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 29557 29569 . + 0 ID=Physo137213;Parent=Physo137213;rank=3 scaffold_52 . CDS 29615 30457 . + 0 ID=Physo137213;Parent=Physo137213;rank=4 scaffold_52 . CDS 30565 30756 . + 0 ID=Physo137213;Parent=Physo137213;rank=5 scaffold_52 . repeat_region 38593 38713 . ? . description=trf scaffold_52 ensembl protein_coding_gene 31162 31626 . - . ID=Physo109008;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_520001;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 31162 31626 . - . ID=Physo109008;Parent=Physo109008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 31162 31626 . - 0 ID=Physo109008;Parent=Physo109008;rank=1 scaffold_52 . exon 31162 31626 . - . ID=Physo109008.1;Parent=Physo109008;constitutive=1;rank=1 scaffold_52 . exon 29557 29569 . + . ID=Physo137213.3;Parent=Physo137213;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . exon 29615 30457 . + . ID=Physo137213.4;Parent=Physo137213;constitutive=1;rank=4 scaffold_52 . exon 30565 30756 . + . ID=Physo137213.5;Parent=Physo137213;constitutive=1;rank=5 scaffold_52 ensembl protein_coding_gene 34578 37012 . - . ID=Physo137215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520005;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 34578 37012 . - . ID=Physo137215;Parent=Physo137215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 34578 35206 . - 0 ID=Physo137215;Parent=Physo137215;rank=3 scaffold_52 . exon 34578 35206 . - . ID=Physo137215.3;Parent=Physo137215;constitutive=1;ensembl_phase=1;rank=3 scaffold_52 . CDS 35319 35555 . - 0 ID=Physo137215;Parent=Physo137215;rank=2 scaffold_52 . exon 35319 35555 . - . ID=Physo137215.2;Parent=Physo137215;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 36049 37012 . - 0 ID=Physo137215;Parent=Physo137215;rank=1 scaffold_52 . exon 36049 37012 . - . ID=Physo137215.1;Parent=Physo137215;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . biological_region 39784 39788 0.999 + . logic_name=eponine scaffold_52 . biological_region 39801 39803 0.999 - . logic_name=eponine scaffold_52 . biological_region 42128 42129 0.999 - . logic_name=eponine scaffold_52 . biological_region 45294 45296 0.999 + . logic_name=eponine scaffold_52 . repeat_region 45893 45910 . ? . description=dust scaffold_52 . repeat_region 46759 46766 . ? . description=dust scaffold_52 . repeat_region 47115 47122 . ? . description=dust scaffold_52 . repeat_region 47327 47342 . ? . description=dust scaffold_52 ensembl protein_coding_gene 42139 43263 . + . ID=Physo137216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520006;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 42139 43263 . + . ID=Physo137216;Parent=Physo137216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 42139 42613 . + 0 ID=Physo137216;Parent=Physo137216;rank=1 scaffold_52 . exon 42139 42613 . + . ID=Physo137216.1;Parent=Physo137216;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 42674 42696 . + 0 ID=Physo137216;Parent=Physo137216;rank=2 scaffold_52 . exon 42674 42696 . + . ID=Physo137216.2;Parent=Physo137216;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 42777 42970 . + 0 ID=Physo137216;Parent=Physo137216;rank=3 scaffold_52 . exon 42777 42970 . + . ID=Physo137216.3;Parent=Physo137216;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_52 . CDS 43033 43181 . + 0 ID=Physo137216;Parent=Physo137216;rank=4 scaffold_52 . exon 43033 43181 . + . ID=Physo137216.4;Parent=Physo137216;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_52 . CDS 43205 43263 . + 0 ID=Physo137216;Parent=Physo137216;rank=5 scaffold_52 . exon 43205 43263 . + . ID=Physo137216.5;Parent=Physo137216;constitutive=1;ensembl_phase=1;rank=5 scaffold_52 ensembl protein_coding_gene 45184 46689 . - . ID=Physo137217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520007;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 45184 46689 . - . ID=Physo137217;Parent=Physo137217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 45184 45203 . - 0 ID=Physo137217;Parent=Physo137217;rank=6 scaffold_52 . exon 45184 45203 . - . ID=Physo137217.6;Parent=Physo137217;constitutive=1;ensembl_phase=1;rank=6 scaffold_52 . CDS 45338 45584 . - 0 ID=Physo137217;Parent=Physo137217;rank=5 scaffold_52 . exon 45338 45584 . - . ID=Physo137217.5;Parent=Physo137217;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_52 . CDS 45650 45769 . - 0 ID=Physo137217;Parent=Physo137217;rank=4 scaffold_52 . exon 45650 45769 . - . ID=Physo137217.4;Parent=Physo137217;constitutive=1;rank=4 scaffold_52 . CDS 45966 46046 . - 0 ID=Physo137217;Parent=Physo137217;rank=3 scaffold_52 . exon 45966 46046 . - . ID=Physo137217.3;Parent=Physo137217;constitutive=1;rank=3 scaffold_52 . CDS 46193 46400 . - 0 ID=Physo137217;Parent=Physo137217;rank=2 scaffold_52 . exon 46193 46400 . - . ID=Physo137217.2;Parent=Physo137217;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 46466 46689 . - 0 ID=Physo137217;Parent=Physo137217;rank=1 scaffold_52 . exon 46466 46689 . - . ID=Physo137217.1;Parent=Physo137217;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 58458 60284 . + . ID=Physo137218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520008;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 58458 60284 . + . ID=Physo137218;Parent=Physo137218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 58458 60284 . + 0 ID=Physo137218;Parent=Physo137218;rank=1 scaffold_52 . exon 58458 60284 . + . ID=Physo137218.1;Parent=Physo137218;constitutive=1;rank=1 scaffold_52 . biological_region 59705 59708 0.999 + . logic_name=eponine scaffold_52 . biological_region 60807 60807 0.999 - . logic_name=eponine scaffold_52 . biological_region 60841 60845 0.999 - . logic_name=eponine scaffold_52 . biological_region 60860 60863 0.999 - . logic_name=eponine scaffold_52 . repeat_region 61371 61428 . ? . description=dust scaffold_52 . biological_region 65099 65101 0.999 - . logic_name=eponine scaffold_52 . biological_region 65305 65313 0.999 + . logic_name=eponine scaffold_52 . biological_region 65312 65318 0.999 - . logic_name=eponine scaffold_52 . repeat_region 65697 65786 . ? . description=dust scaffold_52 . repeat_region 65730 65753 . ? . description=trf scaffold_52 . biological_region 65837 65840 0.999 - . logic_name=eponine scaffold_52 . repeat_region 66172 66179 . ? . description=dust scaffold_52 . biological_region 67231 67233 0.999 - . logic_name=eponine scaffold_52 . biological_region 67394 67396 0.999 + . logic_name=eponine scaffold_52 . biological_region 67458 67463 0.999 - . logic_name=eponine scaffold_52 . biological_region 67516 67521 0.999 + . logic_name=eponine scaffold_52 . biological_region 67765 67767 0.999 + . logic_name=eponine scaffold_52 . biological_region 67830 67834 0.999 + . logic_name=eponine scaffold_52 . biological_region 68022 68024 0.999 - . logic_name=eponine scaffold_52 . biological_region 68134 68134 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 61573 62322 . + . ID=Physo137219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520009;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 61573 62322 . + . ID=Physo137219;Parent=Physo137219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 61573 61824 . + 0 ID=Physo137219;Parent=Physo137219;rank=1 scaffold_52 . exon 61573 61824 . + . ID=Physo137219.1;Parent=Physo137219;constitutive=1;rank=1 scaffold_52 . CDS 61915 62322 . + 0 ID=Physo137219;Parent=Physo137219;rank=2 scaffold_52 . exon 61915 62322 . + . ID=Physo137219.2;Parent=Physo137219;constitutive=1;rank=2 scaffold_52 ensembl protein_coding_gene 65318 65899 . - . ID=Physo137221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520011;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 65318 65899 . - . ID=Physo137221;Parent=Physo137221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 65318 65482 . - 0 ID=Physo137221;Parent=Physo137221;rank=2 scaffold_52 . exon 65318 65482 . - . ID=Physo137221.2;Parent=Physo137221;constitutive=1;rank=2 scaffold_52 . CDS 65573 65899 . - 0 ID=Physo137221;Parent=Physo137221;rank=1 scaffold_52 . exon 65573 65899 . - . ID=Physo137221.1;Parent=Physo137221;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 68771 70135 . + . ID=Physo137223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520013;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 68771 70135 . + . ID=Physo137223;Parent=Physo137223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 68771 69565 . + 0 ID=Physo137223;Parent=Physo137223;rank=1 scaffold_52 . exon 68771 69565 . + . ID=Physo137223.1;Parent=Physo137223;constitutive=1;rank=1 scaffold_52 . CDS 69638 70135 . + 0 ID=Physo137223;Parent=Physo137223;rank=2 scaffold_52 ensembl protein_coding_gene 63354 65152 . + . ID=Physo157547;biotype=protein_coding;external_name=C_scaffold_52000001;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 63354 65152 . + . ID=Physo157547;Parent=Physo157547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 63354 63377 . + 0 ID=Physo157547;Parent=Physo157547;rank=1 scaffold_52 . exon 63354 63377 . + . ID=Physo157547.1;Parent=Physo157547;constitutive=1;rank=1 scaffold_52 . CDS 63428 64648 . + 0 ID=Physo157547;Parent=Physo157547;rank=2 scaffold_52 . exon 63428 64648 . + . ID=Physo157547.2;Parent=Physo157547;constitutive=1;rank=2 scaffold_52 . CDS 64712 65152 . + 0 ID=Physo157547;Parent=Physo157547;rank=3 scaffold_52 . exon 64712 65152 . + . ID=Physo157547.3;Parent=Physo157547;constitutive=1;rank=3 scaffold_52 ensembl protein_coding_gene 66546 67896 . - . ID=Physo157548;biotype=protein_coding;external_name=C_scaffold_52000002;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 66546 67896 . - . ID=Physo157548;Parent=Physo157548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 66546 66919 . - 0 ID=Physo157548;Parent=Physo157548;rank=4 scaffold_52 . exon 66546 66919 . - . ID=Physo157548.4;Parent=Physo157548;constitutive=1;ensembl_phase=1;rank=4 scaffold_52 . CDS 66986 67484 . - 0 ID=Physo157548;Parent=Physo157548;rank=3 scaffold_52 . exon 66986 67484 . - . ID=Physo157548.3;Parent=Physo157548;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_52 . CDS 67593 67657 . - 0 ID=Physo157548;Parent=Physo157548;rank=2 scaffold_52 . exon 67593 67657 . - . ID=Physo157548.2;Parent=Physo157548;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 67839 67896 . - 0 ID=Physo157548;Parent=Physo157548;rank=1 scaffold_52 . exon 67839 67896 . - . ID=Physo157548.1;Parent=Physo157548;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . exon 69638 70135 . + . ID=Physo137223.2;Parent=Physo137223;constitutive=1;rank=2 scaffold_52 ensembl protein_coding_gene 76253 77233 . + . ID=Physo137225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520015;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 76253 77233 . + . ID=Physo137225;Parent=Physo137225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 76253 77233 . + 0 ID=Physo137225;Parent=Physo137225;rank=1 scaffold_52 . exon 76253 77233 . + . ID=Physo137225.1;Parent=Physo137225;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 77477 85372 . + . ID=Physo137226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520016;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 77477 85372 . + . ID=Physo137226;Parent=Physo137226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 77477 85372 . + 0 ID=Physo137226;Parent=Physo137226;rank=1 scaffold_52 . exon 77477 85372 . + . ID=Physo137226.1;Parent=Physo137226;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 70359 72515 . + . ID=Physo157550;biotype=protein_coding;external_name=C_scaffold_52000004;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 70359 72515 . + . ID=Physo157550;Parent=Physo157550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 70359 72515 . + 0 ID=Physo157550;Parent=Physo157550;rank=1 scaffold_52 . exon 70359 72515 . + . ID=Physo157550.1;Parent=Physo157550;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 74608 74898 . + . ID=Physo157551;biotype=protein_coding;external_name=C_scaffold_52000005;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 74608 74898 . + . ID=Physo157551;Parent=Physo157551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 74608 74898 . + 0 ID=Physo157551;Parent=Physo157551;rank=1 scaffold_52 . exon 74608 74898 . + . ID=Physo157551.1;Parent=Physo157551;constitutive=1;rank=1 scaffold_52 . biological_region 79323 79328 0.999 - . logic_name=eponine scaffold_52 . biological_region 82568 82572 0.999 - . logic_name=eponine scaffold_52 . biological_region 84152 84158 0.999 + . logic_name=eponine scaffold_52 . biological_region 84248 84250 0.999 - . logic_name=eponine scaffold_52 . biological_region 84304 84306 0.999 + . logic_name=eponine scaffold_52 . biological_region 84423 84427 0.999 - . logic_name=eponine scaffold_52 . biological_region 84434 84434 0.999 + . logic_name=eponine scaffold_52 . biological_region 84759 84764 0.999 + . logic_name=eponine scaffold_52 . repeat_region 85223 85246 . ? . description=dust scaffold_52 . repeat_region 85223 85250 . ? . description=trf scaffold_52 . repeat_region 86486 86543 . + . description=Polinton-1_PI scaffold_52 . repeat_region 87269 87462 . + . description=Polinton-1_PI scaffold_52 ensembl protein_coding_gene 87282 88351 . + . ID=Physo137227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520017;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 87282 88351 . + . ID=Physo137227;Parent=Physo137227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 87282 88091 . + . ID=Physo137227.1;Parent=Physo137227;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_52 . CDS 87298 88091 . + 0 ID=Physo137227;Parent=Physo137227;rank=1 scaffold_52 . CDS 88250 88259 . + 0 ID=Physo137227;Parent=Physo137227;rank=2 scaffold_52 . exon 88250 88351 . + . ID=Physo137227.2;Parent=Physo137227;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_52 ensembl protein_coding_gene 90284 91255 . + . ID=Physo109009;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_520002;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 90284 91255 . + . ID=Physo109009;Parent=Physo109009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 90284 91255 . + 0 ID=Physo109009;Parent=Physo109009;rank=1 scaffold_52 . exon 90284 91255 . + . ID=Physo109009.1;Parent=Physo109009;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 91592 93406 . - . ID=Physo137229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520019;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 91592 93406 . - . ID=Physo137229;Parent=Physo137229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 91592 93406 . - 0 ID=Physo137229;Parent=Physo137229;rank=1 scaffold_52 . exon 91592 93406 . - . ID=Physo137229.1;Parent=Physo137229;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 94824 96425 . - . ID=Physo157552;biotype=protein_coding;external_name=C_scaffold_52000006;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 94824 96425 . - . ID=Physo157552;Parent=Physo157552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 94824 94850 . - 0 ID=Physo157552;Parent=Physo157552;rank=6 scaffold_52 . exon 94824 94850 . - . ID=Physo157552.6;Parent=Physo157552;constitutive=1;rank=6 scaffold_52 . CDS 94968 95049 . - 0 ID=Physo157552;Parent=Physo157552;rank=5 scaffold_52 . exon 94968 95049 . - . ID=Physo157552.5;Parent=Physo157552;constitutive=1;ensembl_phase=2;rank=5 scaffold_52 . CDS 95114 95394 . - 0 ID=Physo157552;Parent=Physo157552;rank=4 scaffold_52 . exon 95114 95394 . - . ID=Physo157552.4;Parent=Physo157552;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_52 . CDS 95535 95780 . - 0 ID=Physo157552;Parent=Physo157552;rank=3 scaffold_52 . exon 95535 95780 . - . ID=Physo157552.3;Parent=Physo157552;constitutive=1;rank=3 scaffold_52 . CDS 95853 96082 . - 0 ID=Physo157552;Parent=Physo157552;rank=2 scaffold_52 . exon 95853 96082 . - . ID=Physo157552.2;Parent=Physo157552;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 96152 96425 . - 0 ID=Physo157552;Parent=Physo157552;rank=1 scaffold_52 . exon 96152 96425 . - . ID=Physo157552.1;Parent=Physo157552;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 ensembl protein_coding_gene 96987 98324 . + . ID=Physo157553;biotype=protein_coding;external_name=C_scaffold_52000007;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 96987 98324 . + . ID=Physo157553;Parent=Physo157553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 96987 97142 . + 0 ID=Physo157553;Parent=Physo157553;rank=1 scaffold_52 . exon 96987 97142 . + . ID=Physo157553.1;Parent=Physo157553;constitutive=1;rank=1 scaffold_52 . CDS 97224 97487 . + 0 ID=Physo157553;Parent=Physo157553;rank=2 scaffold_52 . exon 97224 97487 . + . ID=Physo157553.2;Parent=Physo157553;constitutive=1;rank=2 scaffold_52 . CDS 97630 98162 . + 0 ID=Physo157553;Parent=Physo157553;rank=3 scaffold_52 . exon 97630 98162 . + . ID=Physo157553.3;Parent=Physo157553;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_52 . CDS 98234 98324 . + 0 ID=Physo157553;Parent=Physo157553;rank=4 scaffold_52 . exon 98234 98324 . + . ID=Physo157553.4;Parent=Physo157553;constitutive=1;ensembl_phase=2;rank=4 scaffold_52 . biological_region 100428 100429 0.999 + . logic_name=eponine scaffold_52 . biological_region 102524 102524 0.999 + . logic_name=eponine scaffold_52 . biological_region 102581 102581 0.999 + . logic_name=eponine scaffold_52 . biological_region 105658 105663 0.999 + . logic_name=eponine scaffold_52 . repeat_region 106227 106263 . ? . description=dust scaffold_52 . repeat_region 106227 106263 . ? . description=trf scaffold_52 ensembl protein_coding_gene 98607 99792 . - . ID=Physo137231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520021;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 98607 99792 . - . ID=Physo137231;Parent=Physo137231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 98607 98750 . - 0 ID=Physo137231;Parent=Physo137231;rank=3 scaffold_52 . exon 98607 98750 . - . ID=Physo137231.3;Parent=Physo137231;constitutive=1;rank=3 scaffold_52 . CDS 98843 98980 . - 0 ID=Physo137231;Parent=Physo137231;rank=2 scaffold_52 . exon 98843 98980 . - . ID=Physo137231.2;Parent=Physo137231;constitutive=1;rank=2 scaffold_52 . CDS 99055 99732 . - 0 ID=Physo137231;Parent=Physo137231;rank=1 scaffold_52 . exon 99055 99792 . - . ID=Physo137231.1;Parent=Physo137231;constitutive=1;ensembl_phase=-1;rank=1 scaffold_52 ensembl protein_coding_gene 99898 102978 . - . ID=Physo137232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520022;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 99898 102978 . - . ID=Physo137232;Parent=Physo137232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 99898 102812 . - 0 ID=Physo137232;Parent=Physo137232;rank=2 scaffold_52 . exon 99898 102812 . - . ID=Physo137232.2;Parent=Physo137232;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 102900 102978 . - 0 ID=Physo137232;Parent=Physo137232;rank=1 scaffold_52 . exon 102900 102978 . - . ID=Physo137232.1;Parent=Physo137232;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 ensembl protein_coding_gene 104328 105413 . - . ID=Physo157555;biotype=protein_coding;external_name=C_scaffold_52000009;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 104328 105413 . - . ID=Physo157555;Parent=Physo157555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 104328 104466 . - 0 ID=Physo157555;Parent=Physo157555;rank=5 scaffold_52 . exon 104328 104466 . - . ID=Physo157555.5;Parent=Physo157555;constitutive=1;ensembl_phase=2;rank=5 scaffold_52 . CDS 104559 104733 . - 0 ID=Physo157555;Parent=Physo157555;rank=4 scaffold_52 . exon 104559 104733 . - . ID=Physo157555.4;Parent=Physo157555;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_52 . CDS 104822 104927 . - 0 ID=Physo157555;Parent=Physo157555;rank=3 scaffold_52 . exon 104822 104927 . - . ID=Physo157555.3;Parent=Physo157555;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_52 . CDS 105001 105103 . - 0 ID=Physo157555;Parent=Physo157555;rank=2 scaffold_52 . exon 105001 105103 . - . ID=Physo157555.2;Parent=Physo157555;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 105184 105413 . - 0 ID=Physo157555;Parent=Physo157555;rank=1 scaffold_52 . exon 105184 105413 . - . ID=Physo157555.1;Parent=Physo157555;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 105659 107688 . + . ID=Physo157556;biotype=protein_coding;external_name=C_scaffold_52000010;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 105659 107688 . + . ID=Physo157556;Parent=Physo157556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 105659 105989 . + 0 ID=Physo157556;Parent=Physo157556;rank=1 scaffold_52 . exon 105659 105989 . + . ID=Physo157556.1;Parent=Physo157556;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 106064 106170 . + 0 ID=Physo157556;Parent=Physo157556;rank=2 scaffold_52 . exon 106064 106170 . + . ID=Physo157556.2;Parent=Physo157556;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 106266 106376 . + 0 ID=Physo157556;Parent=Physo157556;rank=3 scaffold_52 . exon 106266 106376 . + . ID=Physo157556.3;Parent=Physo157556;constitutive=1;rank=3 scaffold_52 . CDS 106445 106545 . + 0 ID=Physo157556;Parent=Physo157556;rank=4 scaffold_52 . exon 106445 106545 . + . ID=Physo157556.4;Parent=Physo157556;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_52 . CDS 106676 107266 . + 0 ID=Physo157556;Parent=Physo157556;rank=5 scaffold_52 . exon 106676 107266 . + . ID=Physo157556.5;Parent=Physo157556;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_52 . CDS 107426 107483 . + 0 ID=Physo157556;Parent=Physo157556;rank=6 scaffold_52 . exon 107426 107483 . + . ID=Physo157556.6;Parent=Physo157556;constitutive=1;ensembl_phase=2;rank=6 scaffold_52 . CDS 107656 107688 . + 0 ID=Physo157556;Parent=Physo157556;rank=7 scaffold_52 . exon 107656 107688 . + . ID=Physo157556.7;Parent=Physo157556;constitutive=1;rank=7 scaffold_52 ensembl protein_coding_gene 114197 120183 . + . ID=Physo157557;biotype=protein_coding;external_name=C_scaffold_52000011;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 114197 120183 . + . ID=Physo157557;Parent=Physo157557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 114197 114491 . + 0 ID=Physo157557;Parent=Physo157557;rank=1 scaffold_52 . exon 114197 114491 . + . ID=Physo157557.1;Parent=Physo157557;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 114573 114989 . + 0 ID=Physo157557;Parent=Physo157557;rank=2 scaffold_52 . exon 114573 114989 . + . ID=Physo157557.2;Parent=Physo157557;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 115044 115319 . + 0 ID=Physo157557;Parent=Physo157557;rank=3 scaffold_52 . exon 115044 115319 . + . ID=Physo157557.3;Parent=Physo157557;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_52 . CDS 115350 115937 . + 0 ID=Physo157557;Parent=Physo157557;rank=4 scaffold_52 . exon 115350 115937 . + . ID=Physo157557.4;Parent=Physo157557;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_52 . CDS 116047 116059 . + 0 ID=Physo157557;Parent=Physo157557;rank=5 scaffold_52 . exon 116047 116059 . + . ID=Physo157557.5;Parent=Physo157557;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_52 . CDS 116092 116362 . + 0 ID=Physo157557;Parent=Physo157557;rank=6 scaffold_52 . exon 116092 116362 . + . ID=Physo157557.6;Parent=Physo157557;constitutive=1;ensembl_phase=2;rank=6 scaffold_52 . CDS 116507 116949 . + 0 ID=Physo157557;Parent=Physo157557;rank=7 scaffold_52 . exon 116507 116949 . + . ID=Physo157557.7;Parent=Physo157557;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_52 . CDS 117004 117099 . + 0 ID=Physo157557;Parent=Physo157557;rank=8 scaffold_52 . exon 117004 117099 . + . ID=Physo157557.8;Parent=Physo157557;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_52 . CDS 117160 117451 . + 0 ID=Physo157557;Parent=Physo157557;rank=9 scaffold_52 . exon 117160 117451 . + . ID=Physo157557.9;Parent=Physo157557;constitutive=1;ensembl_phase=2;rank=9 scaffold_52 . CDS 117523 119082 . + 0 ID=Physo157557;Parent=Physo157557;rank=10 scaffold_52 . exon 117523 119082 . + . ID=Physo157557.10;Parent=Physo157557;constitutive=1;rank=10 scaffold_52 . CDS 119233 119510 . + 0 ID=Physo157557;Parent=Physo157557;rank=11 scaffold_52 . CDS 119550 120183 . + 0 ID=Physo157557;Parent=Physo157557;rank=12 scaffold_52 . biological_region 119467 119470 0.999 + . logic_name=eponine scaffold_52 . biological_region 120033 120035 0.999 - . logic_name=eponine scaffold_52 . repeat_region 121395 121407 . ? . description=dust scaffold_52 . biological_region 123131 123133 0.999 + . logic_name=eponine scaffold_52 . biological_region 123156 123159 0.999 + . logic_name=eponine scaffold_52 . biological_region 123242 123244 0.999 - . logic_name=eponine scaffold_52 . biological_region 123894 123897 0.999 - . logic_name=eponine scaffold_52 . repeat_region 123928 123954 . ? . description=trf scaffold_52 . biological_region 123935 123941 0.999 - . logic_name=eponine scaffold_52 . repeat_region 124360 124406 . ? . description=dust scaffold_52 . repeat_region 124613 124663 . ? . description=trf scaffold_52 . repeat_region 124663 124709 . ? . description=trf scaffold_52 . repeat_region 124693 124727 . ? . description=dust scaffold_52 . repeat_region 124698 124726 . ? . description=trf scaffold_52 . biological_region 125685 125686 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 120314 122741 . + . ID=Physo137236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520026;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 120314 122741 . + . ID=Physo137236;Parent=Physo137236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 120314 120468 . + 0 ID=Physo137236;Parent=Physo137236;rank=1 scaffold_52 . exon 120314 120468 . + . ID=Physo137236.1;Parent=Physo137236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 120542 120629 . + 0 ID=Physo137236;Parent=Physo137236;rank=2 scaffold_52 . exon 120542 120629 . + . ID=Physo137236.2;Parent=Physo137236;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 120819 121016 . + 0 ID=Physo137236;Parent=Physo137236;rank=3 scaffold_52 . exon 120819 121016 . + . ID=Physo137236.3;Parent=Physo137236;constitutive=1;rank=3 scaffold_52 . CDS 121085 121381 . + 0 ID=Physo137236;Parent=Physo137236;rank=4 scaffold_52 . exon 121085 121381 . + . ID=Physo137236.4;Parent=Physo137236;constitutive=1;rank=4 scaffold_52 . CDS 121460 121573 . + 0 ID=Physo137236;Parent=Physo137236;rank=5 scaffold_52 . exon 121460 121573 . + . ID=Physo137236.5;Parent=Physo137236;constitutive=1;rank=5 scaffold_52 . CDS 121649 121718 . + 0 ID=Physo137236;Parent=Physo137236;rank=6 scaffold_52 . exon 121649 121718 . + . ID=Physo137236.6;Parent=Physo137236;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_52 . CDS 121790 121948 . + 0 ID=Physo137236;Parent=Physo137236;rank=7 scaffold_52 . exon 121790 121948 . + . ID=Physo137236.7;Parent=Physo137236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_52 . CDS 122163 122268 . + 0 ID=Physo137236;Parent=Physo137236;rank=8 scaffold_52 . exon 122163 122268 . + . ID=Physo137236.8;Parent=Physo137236;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_52 . CDS 122348 122549 . + 0 ID=Physo137236;Parent=Physo137236;rank=9 scaffold_52 . exon 122348 122549 . + . ID=Physo137236.9;Parent=Physo137236;constitutive=1;ensembl_phase=2;rank=9 scaffold_52 . CDS 122619 122708 . + 0 ID=Physo137236;Parent=Physo137236;rank=10 scaffold_52 . exon 122619 122741 . + . ID=Physo137236.10;Parent=Physo137236;constitutive=1;ensembl_end_phase=-1;rank=10 scaffold_52 ensembl protein_coding_gene 123130 124065 . - . ID=Physo137237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520027;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 123130 124065 . - . ID=Physo137237;Parent=Physo137237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 123130 123356 . - 0 ID=Physo137237;Parent=Physo137237;rank=4 scaffold_52 . exon 123130 123356 . - . ID=Physo137237.4;Parent=Physo137237;constitutive=1;ensembl_phase=1;rank=4 scaffold_52 . CDS 123430 123506 . - 0 ID=Physo137237;Parent=Physo137237;rank=3 scaffold_52 . exon 123430 123506 . - . ID=Physo137237.3;Parent=Physo137237;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 123580 123645 . - 0 ID=Physo137237;Parent=Physo137237;rank=2 scaffold_52 . exon 123580 123645 . - . ID=Physo137237.2;Parent=Physo137237;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 123707 124065 . - 0 ID=Physo137237;Parent=Physo137237;rank=1 scaffold_52 . exon 123707 124065 . - . ID=Physo137237.1;Parent=Physo137237;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 124517 126028 . + . ID=Physo137238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520028;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 124517 126028 . + . ID=Physo137238;Parent=Physo137238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 124517 126028 . + . ID=Physo137238.1;Parent=Physo137238;constitutive=1;ensembl_phase=-1;rank=1 scaffold_52 . CDS 124523 126028 . + 0 ID=Physo137238;Parent=Physo137238;rank=1 scaffold_52 . exon 119233 119510 . + . ID=Physo157557.11;Parent=Physo157557;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_52 . exon 119550 120183 . + . ID=Physo157557.12;Parent=Physo157557;constitutive=1;ensembl_phase=2;rank=12 scaffold_52 ensembl protein_coding_gene 128027 129353 . - . ID=Physo137239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520029;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 128027 129353 . - . ID=Physo137239;Parent=Physo137239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 128027 129346 . - 0 ID=Physo137239;Parent=Physo137239;rank=1 scaffold_52 . exon 128027 129353 . - . ID=Physo137239.1;Parent=Physo137239;constitutive=1;ensembl_phase=-1;rank=1 scaffold_52 ensembl protein_coding_gene 129525 131495 . + . ID=Physo137240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520030;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 129525 131495 . + . ID=Physo137240;Parent=Physo137240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 129525 131495 . + 0 ID=Physo137240;Parent=Physo137240;rank=1 scaffold_52 . exon 129525 131495 . + . ID=Physo137240.1;Parent=Physo137240;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 132811 134722 . + . ID=Physo137241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520031;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 132811 134722 . + . ID=Physo137241;Parent=Physo137241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 132811 133009 . + 0 ID=Physo137241;Parent=Physo137241;rank=1 scaffold_52 . exon 132811 133009 . + . ID=Physo137241.1;Parent=Physo137241;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 133092 134722 . + 0 ID=Physo137241;Parent=Physo137241;rank=2 scaffold_52 . exon 133092 134722 . + . ID=Physo137241.2;Parent=Physo137241;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 ensembl protein_coding_gene 135319 140043 . - . ID=Physo137242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520032;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 135319 140043 . - . ID=Physo137242;Parent=Physo137242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 135319 136983 . - . ID=Physo137242.12;Parent=Physo137242;constitutive=1;ensembl_end_phase=-1;rank=12 scaffold_52 . CDS 135487 136983 . - 0 ID=Physo137242;Parent=Physo137242;rank=12 scaffold_52 . CDS 137071 137270 . - 0 ID=Physo137242;Parent=Physo137242;rank=11 scaffold_52 . exon 137071 137270 . - . ID=Physo137242.11;Parent=Physo137242;constitutive=1;ensembl_phase=1;rank=11 scaffold_52 . CDS 137398 137498 . - 0 ID=Physo137242;Parent=Physo137242;rank=10 scaffold_52 . exon 137398 137498 . - . ID=Physo137242.10;Parent=Physo137242;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_52 . CDS 137759 137856 . - 0 ID=Physo137242;Parent=Physo137242;rank=9 scaffold_52 . exon 137759 137856 . - . ID=Physo137242.9;Parent=Physo137242;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_52 . CDS 137921 138241 . - 0 ID=Physo137242;Parent=Physo137242;rank=8 scaffold_52 . CDS 138317 138357 . - 0 ID=Physo137242;Parent=Physo137242;rank=7 scaffold_52 . CDS 138435 138728 . - 0 ID=Physo137242;Parent=Physo137242;rank=6 scaffold_52 . CDS 138849 139257 . - 0 ID=Physo137242;Parent=Physo137242;rank=5 scaffold_52 . CDS 139329 139389 . - 0 ID=Physo137242;Parent=Physo137242;rank=4 scaffold_52 . CDS 139464 139614 . - 0 ID=Physo137242;Parent=Physo137242;rank=3 scaffold_52 . CDS 139681 139873 . - 0 ID=Physo137242;Parent=Physo137242;rank=2 scaffold_52 . CDS 139939 140043 . - 0 ID=Physo137242;Parent=Physo137242;rank=1 scaffold_52 . biological_region 137870 137871 0.999 - . logic_name=eponine scaffold_52 . repeat_region 138293 138302 . ? . description=dust scaffold_52 . biological_region 142205 142206 0.999 + . logic_name=eponine scaffold_52 . biological_region 143103 143109 0.999 - . logic_name=eponine scaffold_52 . biological_region 145914 145916 0.999 + . logic_name=eponine scaffold_52 . biological_region 145946 145947 0.999 + . logic_name=eponine scaffold_52 . biological_region 145985 145991 0.999 - . logic_name=eponine scaffold_52 . exon 137921 138241 . - . ID=Physo137242.8;Parent=Physo137242;constitutive=1;rank=8 scaffold_52 . exon 138317 138357 . - . ID=Physo137242.7;Parent=Physo137242;constitutive=1;ensembl_phase=1;rank=7 scaffold_52 . exon 138435 138728 . - . ID=Physo137242.6;Parent=Physo137242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_52 . exon 138849 139257 . - . ID=Physo137242.5;Parent=Physo137242;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_52 . exon 139329 139389 . - . ID=Physo137242.4;Parent=Physo137242;constitutive=1;ensembl_phase=2;rank=4 scaffold_52 . exon 139464 139614 . - . ID=Physo137242.3;Parent=Physo137242;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_52 . exon 139681 139873 . - . ID=Physo137242.2;Parent=Physo137242;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . exon 139939 140043 . - . ID=Physo137242.1;Parent=Physo137242;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 142103 143078 . - . ID=Physo137243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520033;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 142103 143078 . - . ID=Physo137243;Parent=Physo137243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 142103 142442 . - 0 ID=Physo137243;Parent=Physo137243;rank=3 scaffold_52 . exon 142103 142442 . - . ID=Physo137243.3;Parent=Physo137243;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 142527 142709 . - 0 ID=Physo137243;Parent=Physo137243;rank=2 scaffold_52 . exon 142527 142709 . - . ID=Physo137243.2;Parent=Physo137243;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 142789 143078 . - 0 ID=Physo137243;Parent=Physo137243;rank=1 scaffold_52 . exon 142789 143078 . - . ID=Physo137243.1;Parent=Physo137243;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 145897 150060 . + . ID=Physo157561;biotype=protein_coding;external_name=C_scaffold_52000015;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 145897 150060 . + . ID=Physo157561;Parent=Physo157561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 145897 146109 . + 0 ID=Physo157561;Parent=Physo157561;rank=1 scaffold_52 . exon 145897 146109 . + . ID=Physo157561.1;Parent=Physo157561;constitutive=1;rank=1 scaffold_52 . CDS 146134 146277 . + 0 ID=Physo157561;Parent=Physo157561;rank=2 scaffold_52 . exon 146134 146277 . + . ID=Physo157561.2;Parent=Physo157561;constitutive=1;rank=2 scaffold_52 . CDS 146361 146415 . + 0 ID=Physo157561;Parent=Physo157561;rank=3 scaffold_52 . exon 146361 146415 . + . ID=Physo157561.3;Parent=Physo157561;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_52 . CDS 146488 147292 . + 0 ID=Physo157561;Parent=Physo157561;rank=4 scaffold_52 . exon 146488 147292 . + . ID=Physo157561.4;Parent=Physo157561;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_52 . CDS 147346 147698 . + 0 ID=Physo157561;Parent=Physo157561;rank=5 scaffold_52 . exon 147346 147698 . + . ID=Physo157561.5;Parent=Physo157561;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_52 . CDS 147787 147912 . + 0 ID=Physo157561;Parent=Physo157561;rank=6 scaffold_52 . CDS 148089 148116 . + 0 ID=Physo157561;Parent=Physo157561;rank=7 scaffold_52 . CDS 148298 148326 . + 0 ID=Physo157561;Parent=Physo157561;rank=8 scaffold_52 . CDS 148552 148652 . + 0 ID=Physo157561;Parent=Physo157561;rank=9 scaffold_52 . CDS 149090 149310 . + 0 ID=Physo157561;Parent=Physo157561;rank=10 scaffold_52 . CDS 149455 149606 . + 0 ID=Physo157561;Parent=Physo157561;rank=11 scaffold_52 . CDS 149769 150060 . + 0 ID=Physo157561;Parent=Physo157561;rank=12 scaffold_52 ensembl protein_coding_gene 151713 154390 . + . ID=Physo137245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520035;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 151713 154390 . + . ID=Physo137245;Parent=Physo137245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 151713 153032 . + 0 ID=Physo137245;Parent=Physo137245;rank=1 scaffold_52 . exon 151713 153032 . + . ID=Physo137245.1;Parent=Physo137245;constitutive=1;rank=1 scaffold_52 . CDS 153112 153359 . + 0 ID=Physo137245;Parent=Physo137245;rank=2 scaffold_52 . exon 153112 153359 . + . ID=Physo137245.2;Parent=Physo137245;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 153432 153582 . + 0 ID=Physo137245;Parent=Physo137245;rank=3 scaffold_52 . exon 153432 153582 . + . ID=Physo137245.3;Parent=Physo137245;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 153666 154124 . + 0 ID=Physo137245;Parent=Physo137245;rank=4 scaffold_52 . exon 153666 154124 . + . ID=Physo137245.4;Parent=Physo137245;constitutive=1;rank=4 scaffold_52 . CDS 154193 154390 . + 0 ID=Physo137245;Parent=Physo137245;rank=5 scaffold_52 . exon 154193 154390 . + . ID=Physo137245.5;Parent=Physo137245;constitutive=1;rank=5 scaffold_52 . exon 147787 147912 . + . ID=Physo157561.6;Parent=Physo157561;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_52 . exon 148089 148116 . + . ID=Physo157561.7;Parent=Physo157561;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_52 . exon 148298 148326 . + . ID=Physo157561.8;Parent=Physo157561;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_52 . exon 148552 148652 . + . ID=Physo157561.9;Parent=Physo157561;constitutive=1;ensembl_phase=1;rank=9 scaffold_52 . exon 149090 149310 . + . ID=Physo157561.10;Parent=Physo157561;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_52 . exon 149455 149606 . + . ID=Physo157561.11;Parent=Physo157561;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_52 . exon 149769 150060 . + . ID=Physo157561.12;Parent=Physo157561;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_52 . biological_region 174367 174368 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 175419 178229 . + . ID=Physo137246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520036;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 175419 178229 . + . ID=Physo137246;Parent=Physo137246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 175419 175888 . + 0 ID=Physo137246;Parent=Physo137246;rank=1 scaffold_52 . exon 175419 175888 . + . ID=Physo137246.1;Parent=Physo137246;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 176420 176503 . + 0 ID=Physo137246;Parent=Physo137246;rank=2 scaffold_52 . exon 176420 176503 . + . ID=Physo137246.2;Parent=Physo137246;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 176568 176740 . + 0 ID=Physo137246;Parent=Physo137246;rank=3 scaffold_52 . exon 176568 176740 . + . ID=Physo137246.3;Parent=Physo137246;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 176807 177030 . + 0 ID=Physo137246;Parent=Physo137246;rank=4 scaffold_52 . exon 176807 177030 . + . ID=Physo137246.4;Parent=Physo137246;constitutive=1;ensembl_phase=1;rank=4 scaffold_52 . CDS 177109 177151 . + 0 ID=Physo137246;Parent=Physo137246;rank=5 scaffold_52 . exon 177109 177151 . + . ID=Physo137246.5;Parent=Physo137246;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_52 . CDS 177216 177336 . + 0 ID=Physo137246;Parent=Physo137246;rank=6 scaffold_52 . exon 177216 177336 . + . ID=Physo137246.6;Parent=Physo137246;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_52 . CDS 177409 177512 . + 0 ID=Physo137246;Parent=Physo137246;rank=7 scaffold_52 . CDS 177598 178229 . + 0 ID=Physo137246;Parent=Physo137246;rank=8 scaffold_52 . repeat_region 181242 181286 . ? . description=trf scaffold_52 . exon 177409 177512 . + . ID=Physo137246.7;Parent=Physo137246;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_52 . exon 177598 178229 . + . ID=Physo137246.8;Parent=Physo137246;constitutive=1;ensembl_phase=1;rank=8 scaffold_52 ensembl protein_coding_gene 178394 182087 . - . ID=Physo137247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520037;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 178394 182087 . - . ID=Physo137247;Parent=Physo137247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 178394 178746 . - 0 ID=Physo137247;Parent=Physo137247;rank=3 scaffold_52 . exon 178394 178746 . - . ID=Physo137247.3;Parent=Physo137247;constitutive=1;ensembl_phase=1;rank=3 scaffold_52 . CDS 178818 179859 . - 0 ID=Physo137247;Parent=Physo137247;rank=2 scaffold_52 . exon 178818 179859 . - . ID=Physo137247.2;Parent=Physo137247;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . CDS 179952 182087 . - 0 ID=Physo137247;Parent=Physo137247;rank=1 scaffold_52 . exon 179952 182087 . - . ID=Physo137247.1;Parent=Physo137247;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 182269 183667 . + . ID=Physo157563;biotype=protein_coding;external_name=C_scaffold_52000017;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 182269 183667 . + . ID=Physo157563;Parent=Physo157563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 182269 182324 . + 0 ID=Physo157563;Parent=Physo157563;rank=1 scaffold_52 . exon 182269 182324 . + . ID=Physo157563.1;Parent=Physo157563;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 182403 182787 . + 0 ID=Physo157563;Parent=Physo157563;rank=2 scaffold_52 . exon 182403 182787 . + . ID=Physo157563.2;Parent=Physo157563;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 182865 182909 . + 0 ID=Physo157563;Parent=Physo157563;rank=3 scaffold_52 . exon 182865 182909 . + . ID=Physo157563.3;Parent=Physo157563;constitutive=1;rank=3 scaffold_52 . CDS 182976 183060 . + 0 ID=Physo157563;Parent=Physo157563;rank=4 scaffold_52 . exon 182976 183060 . + . ID=Physo157563.4;Parent=Physo157563;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_52 . CDS 183134 183247 . + 0 ID=Physo157563;Parent=Physo157563;rank=5 scaffold_52 . exon 183134 183247 . + . ID=Physo157563.5;Parent=Physo157563;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_52 . CDS 183645 183667 . + 0 ID=Physo157563;Parent=Physo157563;rank=6 scaffold_52 . exon 183645 183667 . + . ID=Physo157563.6;Parent=Physo157563;constitutive=1;ensembl_phase=1;rank=6 scaffold_52 . repeat_region 190757 190782 . ? . description=dust scaffold_52 . biological_region 190987 190989 0.999 + . logic_name=eponine scaffold_52 . biological_region 191000 191005 0.999 + . logic_name=eponine scaffold_52 . biological_region 191042 191044 0.999 + . logic_name=eponine scaffold_52 . repeat_region 191406 191414 . ? . description=dust scaffold_52 ensembl protein_coding_gene 187207 189041 . + . ID=Physo109010;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_520003;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 187207 189041 . + . ID=Physo109010;Parent=Physo109010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 187207 188631 . + 0 ID=Physo109010;Parent=Physo109010;rank=1 scaffold_52 . exon 187207 189041 . + . ID=Physo109010.1;Parent=Physo109010;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_52 ensembl protein_coding_gene 189096 191140 . - . ID=Physo137250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520040;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 189096 191140 . - . ID=Physo137250;Parent=Physo137250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 189096 189380 . - 0 ID=Physo137250;Parent=Physo137250;rank=8 scaffold_52 . exon 189096 189380 . - . ID=Physo137250.8;Parent=Physo137250;constitutive=1;rank=8 scaffold_52 . CDS 189449 189524 . - 0 ID=Physo137250;Parent=Physo137250;rank=7 scaffold_52 . exon 189449 189524 . - . ID=Physo137250.7;Parent=Physo137250;constitutive=1;ensembl_phase=2;rank=7 scaffold_52 . CDS 189602 189687 . - 0 ID=Physo137250;Parent=Physo137250;rank=6 scaffold_52 . exon 189602 189687 . - . ID=Physo137250.6;Parent=Physo137250;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_52 . CDS 189720 189842 . - 0 ID=Physo137250;Parent=Physo137250;rank=5 scaffold_52 . exon 189720 189842 . - . ID=Physo137250.5;Parent=Physo137250;constitutive=1;rank=5 scaffold_52 . CDS 189904 190147 . - 0 ID=Physo137250;Parent=Physo137250;rank=4 scaffold_52 . exon 189904 190147 . - . ID=Physo137250.4;Parent=Physo137250;constitutive=1;ensembl_phase=2;rank=4 scaffold_52 . CDS 190225 190314 . - 0 ID=Physo137250;Parent=Physo137250;rank=3 scaffold_52 . exon 190225 190314 . - . ID=Physo137250.3;Parent=Physo137250;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_52 . CDS 190519 190940 . - 0 ID=Physo137250;Parent=Physo137250;rank=2 scaffold_52 . exon 190519 190940 . - . ID=Physo137250.2;Parent=Physo137250;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 191036 191140 . - 0 ID=Physo137250;Parent=Physo137250;rank=1 scaffold_52 . exon 191036 191140 . - . ID=Physo137250.1;Parent=Physo137250;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 192749 194406 . - . ID=Physo137251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520041;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 192749 194406 . - . ID=Physo137251;Parent=Physo137251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 192749 192765 . - 0 ID=Physo137251;Parent=Physo137251;rank=3 scaffold_52 . exon 192749 192765 . - . ID=Physo137251.3;Parent=Physo137251;constitutive=1;ensembl_phase=1;rank=3 scaffold_52 . CDS 192883 193045 . - 0 ID=Physo137251;Parent=Physo137251;rank=2 scaffold_52 . exon 192883 193045 . - . ID=Physo137251.2;Parent=Physo137251;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . CDS 193528 194406 . - 0 ID=Physo137251;Parent=Physo137251;rank=1 scaffold_52 . exon 193528 194406 . - . ID=Physo137251.1;Parent=Physo137251;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 204632 206167 . - . ID=Physo109011;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_520004;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 204632 206167 . - . ID=Physo109011;Parent=Physo109011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 204632 206167 . - 0 ID=Physo109011;Parent=Physo109011;rank=1 scaffold_52 . exon 204632 206167 . - . ID=Physo109011.1;Parent=Physo109011;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 197776 199964 . - . ID=Physo137252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520042;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 197776 199964 . - . ID=Physo137252;Parent=Physo137252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 197776 198838 . - 0 ID=Physo137252;Parent=Physo137252;rank=3 scaffold_52 . exon 197776 198838 . - . ID=Physo137252.3;Parent=Physo137252;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 199079 199717 . - 0 ID=Physo137252;Parent=Physo137252;rank=2 scaffold_52 . exon 199079 199717 . - . ID=Physo137252.2;Parent=Physo137252;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 199768 199964 . - 0 ID=Physo137252;Parent=Physo137252;rank=1 scaffold_52 . exon 199768 199964 . - . ID=Physo137252.1;Parent=Physo137252;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 201005 204259 . - . ID=Physo137253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520043;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 201005 204259 . - . ID=Physo137253;Parent=Physo137253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 201005 204259 . - 0 ID=Physo137253;Parent=Physo137253;rank=1 scaffold_52 . exon 201005 204259 . - . ID=Physo137253.1;Parent=Physo137253;constitutive=1;rank=1 scaffold_52 . repeat_region 209634 209653 . ? . description=trf scaffold_52 . repeat_region 210194 210201 . ? . description=dust scaffold_52 . biological_region 216024 216026 0.999 - . logic_name=eponine scaffold_52 . repeat_region 216616 216652 . ? . description=trf scaffold_52 ensembl protein_coding_gene 211496 212450 . + . ID=Physo137255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520045;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 211496 212450 . + . ID=Physo137255;Parent=Physo137255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 211496 212287 . + 0 ID=Physo137255;Parent=Physo137255;rank=1 scaffold_52 . exon 211496 212287 . + . ID=Physo137255.1;Parent=Physo137255;constitutive=1;rank=1 scaffold_52 . CDS 212333 212372 . + 0 ID=Physo137255;Parent=Physo137255;rank=2 scaffold_52 . exon 212333 212372 . + . ID=Physo137255.2;Parent=Physo137255;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . CDS 212440 212450 . + 0 ID=Physo137255;Parent=Physo137255;rank=3 scaffold_52 . exon 212440 212450 . + . ID=Physo137255.3;Parent=Physo137255;constitutive=1;ensembl_phase=1;rank=3 scaffold_52 ensembl tRNA_gene 216656 216725 . - . ID=EPrPSOG00000000240;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_52 ensembl transcript 216656 216725 . - . ID=EPrPSOT00000000240;Parent=EPrPSOG00000000240;biotype=tRNA;logic_name=ncrna_eg scaffold_52 . exon 216656 216725 . - . ID=EPrPSOE00000000240;Parent=EPrPSOT00000000240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . repeat_region 227071 227109 . ? . description=trf scaffold_52 . biological_region 229094 229095 0.999 - . logic_name=eponine scaffold_52 . repeat_region 229133 229177 . ? . description=dust scaffold_52 . biological_region 229282 229282 0.999 + . logic_name=eponine scaffold_52 . repeat_region 231065 231073 . ? . description=dust scaffold_52 . repeat_region 231684 231726 . ? . description=trf scaffold_52 . biological_region 231897 231897 0.999 - . logic_name=eponine scaffold_52 . repeat_region 232116 232140 . ? . description=dust scaffold_52 . repeat_region 232117 232147 . ? . description=trf scaffold_52 . repeat_region 233191 233198 . ? . description=dust scaffold_52 . repeat_region 233314 233322 . ? . description=dust scaffold_52 ensembl protein_coding_gene 228629 229388 . - . ID=Physo137256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520046;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 228629 229388 . - . ID=Physo137256;Parent=Physo137256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 228629 228970 . - 0 ID=Physo137256;Parent=Physo137256;rank=2 scaffold_52 . exon 228629 228970 . - . ID=Physo137256.2;Parent=Physo137256;constitutive=1;rank=2 scaffold_52 . CDS 229053 229388 . - 0 ID=Physo137256;Parent=Physo137256;rank=1 scaffold_52 . exon 229053 229388 . - . ID=Physo137256.1;Parent=Physo137256;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 234727 235237 . + . ID=Physo137257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520047;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 234727 235237 . + . ID=Physo137257;Parent=Physo137257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 234727 234789 . + 0 ID=Physo137257;Parent=Physo137257;rank=1 scaffold_52 . exon 234727 234789 . + . ID=Physo137257.1;Parent=Physo137257;constitutive=1;rank=1 scaffold_52 . CDS 234809 235041 . + 0 ID=Physo137257;Parent=Physo137257;rank=2 scaffold_52 . exon 234809 235041 . + . ID=Physo137257.2;Parent=Physo137257;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 235117 235237 . + 0 ID=Physo137257;Parent=Physo137257;rank=3 scaffold_52 . exon 235117 235237 . + . ID=Physo137257.3;Parent=Physo137257;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 ensembl protein_coding_gene 243510 245321 . + . ID=Physo137258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520048;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 243510 245321 . + . ID=Physo137258;Parent=Physo137258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 243510 243540 . + 0 ID=Physo137258;Parent=Physo137258;rank=1 scaffold_52 . exon 243510 243540 . + . ID=Physo137258.1;Parent=Physo137258;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 243743 244014 . + 0 ID=Physo137258;Parent=Physo137258;rank=2 scaffold_52 . exon 243743 244014 . + . ID=Physo137258.2;Parent=Physo137258;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 244232 244360 . + 0 ID=Physo137258;Parent=Physo137258;rank=3 scaffold_52 . exon 244232 244360 . + . ID=Physo137258.3;Parent=Physo137258;constitutive=1;rank=3 scaffold_52 . CDS 244445 244543 . + 0 ID=Physo137258;Parent=Physo137258;rank=4 scaffold_52 . exon 244445 244543 . + . ID=Physo137258.4;Parent=Physo137258;constitutive=1;rank=4 scaffold_52 . CDS 244570 244935 . + 0 ID=Physo137258;Parent=Physo137258;rank=5 scaffold_52 . exon 244570 244935 . + . ID=Physo137258.5;Parent=Physo137258;constitutive=1;rank=5 scaffold_52 . CDS 244971 245321 . + 0 ID=Physo137258;Parent=Physo137258;rank=6 scaffold_52 . exon 244971 245321 . + . ID=Physo137258.6;Parent=Physo137258;constitutive=1;rank=6 scaffold_52 . biological_region 247918 247925 0.999 + . logic_name=eponine scaffold_52 . biological_region 248832 248837 0.999 - . logic_name=eponine scaffold_52 . repeat_region 250710 250717 . ? . description=dust scaffold_52 ensembl protein_coding_gene 246721 247218 . - . ID=Physo137259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520049;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 246721 247218 . - . ID=Physo137259;Parent=Physo137259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 246721 247218 . - 0 ID=Physo137259;Parent=Physo137259;rank=1 scaffold_52 . exon 246721 247218 . - . ID=Physo137259.1;Parent=Physo137259;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 247923 248906 . + . ID=Physo137260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520050;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 247923 248906 . + . ID=Physo137260;Parent=Physo137260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 247923 248906 . + 0 ID=Physo137260;Parent=Physo137260;rank=1 scaffold_52 . exon 247923 248906 . + . ID=Physo137260.1;Parent=Physo137260;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 249046 249939 . - . ID=Physo137261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520051;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 249046 249939 . - . ID=Physo137261;Parent=Physo137261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 249046 249939 . - 0 ID=Physo137261;Parent=Physo137261;rank=1 scaffold_52 . exon 249046 249939 . - . ID=Physo137261.1;Parent=Physo137261;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 251432 252964 . - . ID=Physo137262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520052;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 251432 252964 . - . ID=Physo137262;Parent=Physo137262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 251432 252964 . - 0 ID=Physo137262;Parent=Physo137262;rank=1 scaffold_52 . exon 251432 252964 . - . ID=Physo137262.1;Parent=Physo137262;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 254023 254862 . - . ID=Physo137263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520053;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 254023 254862 . - . ID=Physo137263;Parent=Physo137263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 254023 254862 . - 0 ID=Physo137263;Parent=Physo137263;rank=1 scaffold_52 . exon 254023 254862 . - . ID=Physo137263.1;Parent=Physo137263;constitutive=1;rank=1 scaffold_52 . repeat_region 262005 262037 . ? . description=trf scaffold_52 ensembl protein_coding_gene 256209 256703 . + . ID=Physo137264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520054;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 256209 256703 . + . ID=Physo137264;Parent=Physo137264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 256209 256703 . + 0 ID=Physo137264;Parent=Physo137264;rank=1 scaffold_52 . exon 256209 256703 . + . ID=Physo137264.1;Parent=Physo137264;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 257045 257881 . - . ID=Physo137265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520055;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 257045 257881 . - . ID=Physo137265;Parent=Physo137265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 257045 257881 . - 0 ID=Physo137265;Parent=Physo137265;rank=1 scaffold_52 . exon 257045 257881 . - . ID=Physo137265.1;Parent=Physo137265;constitutive=1;rank=1 scaffold_52 . repeat_region 267194 267208 . ? . description=dust scaffold_52 . repeat_region 267568 267576 . ? . description=dust scaffold_52 . repeat_region 268700 268712 . ? . description=dust scaffold_52 . biological_region 269386 269390 0.999 - . logic_name=eponine scaffold_52 . biological_region 269422 269428 0.999 - . logic_name=eponine scaffold_52 . biological_region 269465 269467 0.999 + . logic_name=eponine scaffold_52 . biological_region 271091 271091 0.999 + . logic_name=eponine scaffold_52 ensembl protein_coding_gene 269698 270275 . - . ID=Physo109012;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_520005;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 269698 270275 . - . ID=Physo109012;Parent=Physo109012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 269698 269889 . - 0 ID=Physo109012;Parent=Physo109012;rank=2 scaffold_52 . exon 269698 269889 . - . ID=Physo109012.2;Parent=Physo109012;constitutive=1;rank=2 scaffold_52 . CDS 269967 270275 . - 0 ID=Physo109012;Parent=Physo109012;rank=1 scaffold_52 . exon 269967 270275 . - . ID=Physo109012.1;Parent=Physo109012;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 268714 269564 . + . ID=Physo137266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520056;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 268714 269564 . + . ID=Physo137266;Parent=Physo137266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 268714 269562 . + 0 ID=Physo137266;Parent=Physo137266;rank=1 scaffold_52 . exon 268714 269564 . + . ID=Physo137266.1;Parent=Physo137266;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_52 . repeat_region 280068 280088 . ? . description=trf scaffold_52 ensembl protein_coding_gene 276985 278285 . - . ID=Physo109013;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_520006;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 276985 278285 . - . ID=Physo109013;Parent=Physo109013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 276985 277077 . - 0 ID=Physo109013;Parent=Physo109013;rank=7 scaffold_52 . exon 276985 277077 . - . ID=Physo109013.7;Parent=Physo109013;constitutive=1;rank=7 scaffold_52 . CDS 277152 277293 . - 0 ID=Physo109013;Parent=Physo109013;rank=6 scaffold_52 . exon 277152 277293 . - . ID=Physo109013.6;Parent=Physo109013;constitutive=1;ensembl_phase=2;rank=6 scaffold_52 . CDS 277373 277645 . - 0 ID=Physo109013;Parent=Physo109013;rank=5 scaffold_52 . exon 277373 277645 . - . ID=Physo109013.5;Parent=Physo109013;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_52 . CDS 277725 277786 . - 0 ID=Physo109013;Parent=Physo109013;rank=4 scaffold_52 . exon 277725 277786 . - . ID=Physo109013.4;Parent=Physo109013;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_52 . CDS 277875 277992 . - 0 ID=Physo109013;Parent=Physo109013;rank=3 scaffold_52 . exon 277875 277992 . - . ID=Physo109013.3;Parent=Physo109013;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 278021 278064 . - 0 ID=Physo109013;Parent=Physo109013;rank=2 scaffold_52 . exon 278021 278064 . - . ID=Physo109013.2;Parent=Physo109013;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 278088 278285 . - 0 ID=Physo109013;Parent=Physo109013;rank=1 scaffold_52 . exon 278088 278285 . - . ID=Physo109013.1;Parent=Physo109013;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 281611 282095 . + . ID=Physo109014;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_520007;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 281611 282095 . + . ID=Physo109014;Parent=Physo109014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 281611 282095 . + . ID=Physo109014.1;Parent=Physo109014;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_52 . CDS 281623 282048 . + 0 ID=Physo109014;Parent=Physo109014;rank=1 scaffold_52 ensembl protein_coding_gene 279321 280725 . + . ID=Physo137269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520059;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 279321 280725 . + . ID=Physo137269;Parent=Physo137269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 279321 280725 . + . ID=Physo137269.1;Parent=Physo137269;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_52 . CDS 279693 280562 . + 0 ID=Physo137269;Parent=Physo137269;rank=1 scaffold_52 ensembl protein_coding_gene 282264 285904 . + . ID=Physo137271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520061;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 282264 285904 . + . ID=Physo137271;Parent=Physo137271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 282264 283111 . + . ID=Physo137271.1;Parent=Physo137271;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_52 . CDS 282316 283111 . + 0 ID=Physo137271;Parent=Physo137271;rank=1 scaffold_52 . CDS 283202 283254 . + 0 ID=Physo137271;Parent=Physo137271;rank=2 scaffold_52 . exon 283202 283254 . + . ID=Physo137271.2;Parent=Physo137271;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 283322 283599 . + 0 ID=Physo137271;Parent=Physo137271;rank=3 scaffold_52 . exon 283322 283599 . + . ID=Physo137271.3;Parent=Physo137271;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_52 . CDS 283676 283809 . + 0 ID=Physo137271;Parent=Physo137271;rank=4 scaffold_52 . exon 283676 283809 . + . ID=Physo137271.4;Parent=Physo137271;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_52 . CDS 283872 284019 . + 0 ID=Physo137271;Parent=Physo137271;rank=5 scaffold_52 . exon 283872 284019 . + . ID=Physo137271.5;Parent=Physo137271;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_52 . CDS 284093 284285 . + 0 ID=Physo137271;Parent=Physo137271;rank=6 scaffold_52 . exon 284093 284285 . + . ID=Physo137271.6;Parent=Physo137271;constitutive=1;ensembl_phase=2;rank=6 scaffold_52 . CDS 284360 285904 . + 0 ID=Physo137271;Parent=Physo137271;rank=7 scaffold_52 . exon 284360 285904 . + . ID=Physo137271.7;Parent=Physo137271;constitutive=1;rank=7 scaffold_52 . biological_region 290462 290465 0.999 + . logic_name=eponine scaffold_52 . repeat_region 291905 296743 . ? . description=dust scaffold_52 ensembl protein_coding_gene 286056 288464 . - . ID=Physo137272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520062;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 286056 288464 . - . ID=Physo137272;Parent=Physo137272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 286056 288269 . - 0 ID=Physo137272;Parent=Physo137272;rank=2 scaffold_52 . exon 286056 288269 . - . ID=Physo137272.2;Parent=Physo137272;constitutive=1;rank=2 scaffold_52 . CDS 288351 288464 . - 0 ID=Physo137272;Parent=Physo137272;rank=1 scaffold_52 . exon 288351 288464 . - . ID=Physo137272.1;Parent=Physo137272;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 288844 290216 . - . ID=Physo137273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520063;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 288844 290216 . - . ID=Physo137273;Parent=Physo137273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 288844 289599 . - 0 ID=Physo137273;Parent=Physo137273;rank=3 scaffold_52 . exon 288844 289599 . - . ID=Physo137273.3;Parent=Physo137273;constitutive=1;rank=3 scaffold_52 . CDS 289640 289733 . - 0 ID=Physo137273;Parent=Physo137273;rank=2 scaffold_52 . exon 289640 289733 . - . ID=Physo137273.2;Parent=Physo137273;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 290101 290216 . - 0 ID=Physo137273;Parent=Physo137273;rank=1 scaffold_52 . exon 290101 290216 . - . ID=Physo137273.1;Parent=Physo137273;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . repeat_region 301273 306086 . + . description=Polinton-1_PI scaffold_52 ensembl protein_coding_gene 299710 300612 . - . ID=Physo137274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520064;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 299710 300612 . - . ID=Physo137274;Parent=Physo137274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 299710 300612 . - 0 ID=Physo137274;Parent=Physo137274;rank=1 scaffold_52 . exon 299710 300612 . - . ID=Physo137274.1;Parent=Physo137274;constitutive=1;rank=1 scaffold_52 . repeat_region 306422 306429 . ? . description=dust scaffold_52 . repeat_region 306876 306897 . ? . description=dust scaffold_52 . repeat_region 307260 307267 . ? . description=dust scaffold_52 . repeat_region 308631 308768 . ? . description=trf scaffold_52 . repeat_region 308651 308738 . ? . description=trf scaffold_52 . repeat_region 308684 308768 . ? . description=trf scaffold_52 . repeat_region 315548 315684 . - . description=Polinton-1_PI scaffold_52 . repeat_region 316539 316650 . + . description=Polinton-1_PI scaffold_52 . biological_region 322113 322115 0.999 - . logic_name=eponine scaffold_52 . biological_region 323487 323489 0.999 - . logic_name=eponine scaffold_52 . biological_region 323524 323527 0.999 + . logic_name=eponine scaffold_52 . biological_region 323886 323888 0.999 + . logic_name=eponine scaffold_52 ensembl protein_coding_gene 316539 317370 . + . ID=Physo137275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520065;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 316539 317370 . + . ID=Physo137275;Parent=Physo137275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 316539 317228 . + 0 ID=Physo137275;Parent=Physo137275;rank=1 scaffold_52 . exon 316539 317228 . + . ID=Physo137275.1;Parent=Physo137275;constitutive=1;rank=1 scaffold_52 . CDS 317326 317370 . + 0 ID=Physo137275;Parent=Physo137275;rank=2 scaffold_52 . exon 317326 317370 . + . ID=Physo137275.2;Parent=Physo137275;constitutive=1;rank=2 scaffold_52 ensembl protein_coding_gene 319274 325844 . - . ID=Physo137276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520066;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 319274 325844 . - . ID=Physo137276;Parent=Physo137276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 319274 319280 . - 0 ID=Physo137276;Parent=Physo137276;rank=6 scaffold_52 . exon 319274 319280 . - . ID=Physo137276.6;Parent=Physo137276;constitutive=1;ensembl_phase=2;rank=6 scaffold_52 . CDS 319556 321212 . - 0 ID=Physo137276;Parent=Physo137276;rank=5 scaffold_52 . exon 319556 321212 . - . ID=Physo137276.5;Parent=Physo137276;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_52 . CDS 321927 322459 . - 0 ID=Physo137276;Parent=Physo137276;rank=4 scaffold_52 . exon 321927 322459 . - . ID=Physo137276.4;Parent=Physo137276;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_52 . CDS 322706 323050 . - 0 ID=Physo137276;Parent=Physo137276;rank=3 scaffold_52 . exon 322706 323050 . - . ID=Physo137276.3;Parent=Physo137276;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_52 . CDS 323106 323763 . - 0 ID=Physo137276;Parent=Physo137276;rank=2 scaffold_52 . exon 323106 323763 . - . ID=Physo137276.2;Parent=Physo137276;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_52 . CDS 323987 325844 . - 0 ID=Physo137276;Parent=Physo137276;rank=1 scaffold_52 . exon 323987 325844 . - . ID=Physo137276.1;Parent=Physo137276;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . repeat_region 328194 328375 . ? . description=trf scaffold_52 . repeat_region 329538 329558 . ? . description=dust scaffold_52 . repeat_region 329870 329909 . ? . description=trf scaffold_52 . repeat_region 332219 332242 . ? . description=dust scaffold_52 ensembl protein_coding_gene 330628 331989 . + . ID=Physo137277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520067;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 330628 331989 . + . ID=Physo137277;Parent=Physo137277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 330628 331989 . + 0 ID=Physo137277;Parent=Physo137277;rank=1 scaffold_52 . exon 330628 331989 . + . ID=Physo137277.1;Parent=Physo137277;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 334039 334638 . + . ID=Physo157568;biotype=protein_coding;external_name=C_scaffold_52000022;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 334039 334638 . + . ID=Physo157568;Parent=Physo157568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 334039 334638 . + 0 ID=Physo157568;Parent=Physo157568;rank=1 scaffold_52 . exon 334039 334638 . + . ID=Physo157568.1;Parent=Physo157568;constitutive=1;rank=1 scaffold_52 . biological_region 335248 335250 0.999 + . logic_name=eponine scaffold_52 . biological_region 335290 335299 0.999 - . logic_name=eponine scaffold_52 . biological_region 335478 335482 0.999 - . logic_name=eponine scaffold_52 . biological_region 336091 336092 0.999 + . logic_name=eponine scaffold_52 . biological_region 336138 336142 0.999 + . logic_name=eponine scaffold_52 . biological_region 336175 336184 0.999 - . logic_name=eponine scaffold_52 . biological_region 336200 336201 0.999 + . logic_name=eponine scaffold_52 . biological_region 336263 336267 0.999 - . logic_name=eponine scaffold_52 . biological_region 337489 337494 0.999 + . logic_name=eponine scaffold_52 . biological_region 339619 339620 0.999 - . logic_name=eponine scaffold_52 . biological_region 342340 342346 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 341959 346167 . - . ID=Physo137281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520071;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 341959 346167 . - . ID=Physo137281;Parent=Physo137281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 341959 342948 . - 0 ID=Physo137281;Parent=Physo137281;rank=8 scaffold_52 . exon 341959 342948 . - . ID=Physo137281.8;Parent=Physo137281;constitutive=1;rank=8 scaffold_52 . CDS 343022 343084 . - 0 ID=Physo137281;Parent=Physo137281;rank=7 scaffold_52 . exon 343022 343084 . - . ID=Physo137281.7;Parent=Physo137281;constitutive=1;rank=7 scaffold_52 . CDS 343152 343223 . - 0 ID=Physo137281;Parent=Physo137281;rank=6 scaffold_52 . exon 343152 343223 . - . ID=Physo137281.6;Parent=Physo137281;constitutive=1;rank=6 scaffold_52 . CDS 343299 343934 . - 0 ID=Physo137281;Parent=Physo137281;rank=5 scaffold_52 . exon 343299 343934 . - . ID=Physo137281.5;Parent=Physo137281;constitutive=1;rank=5 scaffold_52 . CDS 344363 344503 . - 0 ID=Physo137281;Parent=Physo137281;rank=4 scaffold_52 . exon 344363 344503 . - . ID=Physo137281.4;Parent=Physo137281;constitutive=1;rank=4 scaffold_52 . CDS 344585 344835 . - 0 ID=Physo137281;Parent=Physo137281;rank=3 scaffold_52 . exon 344585 344835 . - . ID=Physo137281.3;Parent=Physo137281;constitutive=1;ensembl_phase=1;rank=3 scaffold_52 . CDS 344936 345305 . - 0 ID=Physo137281;Parent=Physo137281;rank=2 scaffold_52 . CDS 345391 346167 . - 0 ID=Physo137281;Parent=Physo137281;rank=1 scaffold_52 ensembl protein_coding_gene 334828 340555 . - . ID=Physo157569;biotype=protein_coding;external_name=C_scaffold_52000023;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 334828 340555 . - . ID=Physo157569;Parent=Physo157569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 334828 335043 . - 0 ID=Physo157569;Parent=Physo157569;rank=12 scaffold_52 . exon 334828 335043 . - . ID=Physo157569.12;Parent=Physo157569;constitutive=1;rank=12 scaffold_52 . CDS 335107 335801 . - 0 ID=Physo157569;Parent=Physo157569;rank=11 scaffold_52 . exon 335107 335801 . - . ID=Physo157569.11;Parent=Physo157569;constitutive=1;ensembl_phase=1;rank=11 scaffold_52 . CDS 335841 337769 . - 0 ID=Physo157569;Parent=Physo157569;rank=10 scaffold_52 . exon 335841 337769 . - . ID=Physo157569.10;Parent=Physo157569;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_52 . CDS 337803 338379 . - 0 ID=Physo157569;Parent=Physo157569;rank=9 scaffold_52 . exon 337803 338379 . - . ID=Physo157569.9;Parent=Physo157569;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_52 . CDS 338455 338553 . - 0 ID=Physo157569;Parent=Physo157569;rank=8 scaffold_52 . exon 338455 338553 . - . ID=Physo157569.8;Parent=Physo157569;constitutive=1;rank=8 scaffold_52 . CDS 338621 338761 . - 0 ID=Physo157569;Parent=Physo157569;rank=7 scaffold_52 . exon 338621 338761 . - . ID=Physo157569.7;Parent=Physo157569;constitutive=1;rank=7 scaffold_52 . CDS 338833 339372 . - 0 ID=Physo157569;Parent=Physo157569;rank=6 scaffold_52 . exon 338833 339372 . - . ID=Physo157569.6;Parent=Physo157569;constitutive=1;rank=6 scaffold_52 . CDS 339722 339769 . - 0 ID=Physo157569;Parent=Physo157569;rank=5 scaffold_52 . exon 339722 339769 . - . ID=Physo157569.5;Parent=Physo157569;constitutive=1;rank=5 scaffold_52 . CDS 339885 340004 . - 0 ID=Physo157569;Parent=Physo157569;rank=4 scaffold_52 . exon 339885 340004 . - . ID=Physo157569.4;Parent=Physo157569;constitutive=1;rank=4 scaffold_52 . CDS 340085 340192 . - 0 ID=Physo157569;Parent=Physo157569;rank=3 scaffold_52 . exon 340085 340192 . - . ID=Physo157569.3;Parent=Physo157569;constitutive=1;rank=3 scaffold_52 . CDS 340285 340337 . - 0 ID=Physo157569;Parent=Physo157569;rank=2 scaffold_52 . exon 340285 340337 . - . ID=Physo157569.2;Parent=Physo157569;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 340507 340555 . - 0 ID=Physo157569;Parent=Physo157569;rank=1 scaffold_52 . exon 340507 340555 . - . ID=Physo157569.1;Parent=Physo157569;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . repeat_region 346816 346834 . ? . description=dust scaffold_52 . repeat_region 346943 346982 . ? . description=trf scaffold_52 . repeat_region 347591 347788 . ? . description=trf scaffold_52 . repeat_region 347603 347788 . ? . description=trf scaffold_52 . repeat_region 347628 347817 . ? . description=trf scaffold_52 . repeat_region 347628 347817 . ? . description=trf scaffold_52 . repeat_region 347645 347708 . ? . description=dust scaffold_52 . repeat_region 347808 347874 . ? . description=trf scaffold_52 . repeat_region 349666 349673 . ? . description=dust scaffold_52 . repeat_region 350636 350643 . ? . description=dust scaffold_52 . repeat_region 351007 351040 . ? . description=trf scaffold_52 . repeat_region 351526 351556 . ? . description=dust scaffold_52 . repeat_region 351537 351556 . ? . description=trf scaffold_52 . repeat_region 351672 351684 . ? . description=dust scaffold_52 . repeat_region 351756 351776 . ? . description=trf scaffold_52 . repeat_region 351847 351889 . ? . description=trf scaffold_52 . repeat_region 351917 351987 . ? . description=trf scaffold_52 . repeat_region 353205 353237 . ? . description=trf scaffold_52 . repeat_region 353309 353404 . ? . description=trf scaffold_52 . repeat_region 353328 353437 . ? . description=trf scaffold_52 . repeat_region 353455 353546 . ? . description=trf scaffold_52 . repeat_region 353610 353710 . ? . description=trf scaffold_52 . exon 344936 345305 . - . ID=Physo137281.2;Parent=Physo137281;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_52 . exon 345391 346167 . - . ID=Physo137281.1;Parent=Physo137281;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 347006 349447 . + . ID=Physo137282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520072;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 347006 349447 . + . ID=Physo137282;Parent=Physo137282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 347006 349447 . + 0 ID=Physo137282;Parent=Physo137282;rank=1 scaffold_52 . exon 347006 349447 . + . ID=Physo137282.1;Parent=Physo137282;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 351077 351495 . + . ID=Physo137283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520073;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 351077 351495 . + . ID=Physo137283;Parent=Physo137283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 351077 351495 . + . ID=Physo137283.1;Parent=Physo137283;constitutive=1;ensembl_phase=-1;rank=1 scaffold_52 . CDS 351094 351495 . + 0 ID=Physo137283;Parent=Physo137283;rank=1 scaffold_52 ensembl protein_coding_gene 351732 354005 . - . ID=Physo137284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520074;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 351732 354005 . - . ID=Physo137284;Parent=Physo137284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 351732 354005 . - 0 ID=Physo137284;Parent=Physo137284;rank=1 scaffold_52 . exon 351732 354005 . - . ID=Physo137284.1;Parent=Physo137284;constitutive=1;rank=1 scaffold_52 . biological_region 358253 358256 0.999 - . logic_name=eponine scaffold_52 . biological_region 363426 363427 0.999 + . logic_name=eponine scaffold_52 . biological_region 364187 364188 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 355380 359837 . - . ID=Physo137285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520075;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 355380 359837 . - . ID=Physo137285;Parent=Physo137285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 355380 358344 . - 0 ID=Physo137285;Parent=Physo137285;rank=3 scaffold_52 . exon 355380 358344 . - . ID=Physo137285.3;Parent=Physo137285;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 358669 359529 . - 0 ID=Physo137285;Parent=Physo137285;rank=2 scaffold_52 . exon 358669 359529 . - . ID=Physo137285.2;Parent=Physo137285;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 359632 359837 . - 0 ID=Physo137285;Parent=Physo137285;rank=1 scaffold_52 . exon 359632 359837 . - . ID=Physo137285.1;Parent=Physo137285;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl pseudogene 361057 362748 . - . ID=Physo137286;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_520076;logic_name=jgi_physo1_1 scaffold_52 ensembl pseudogene 361057 362748 . - . ID=Physo137286;Parent=Physo137286;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_52 . exon 361057 362748 . - . ID=Physo137286.1;Parent=Physo137286;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_52 ensembl protein_coding_gene 363529 364361 . + . ID=Physo137287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520077;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 363529 364361 . + . ID=Physo137287;Parent=Physo137287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 363529 363787 . + 0 ID=Physo137287;Parent=Physo137287;rank=1 scaffold_52 . exon 363529 363787 . + . ID=Physo137287.1;Parent=Physo137287;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 364006 364361 . + 0 ID=Physo137287;Parent=Physo137287;rank=2 scaffold_52 . exon 364006 364361 . + . ID=Physo137287.2;Parent=Physo137287;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . repeat_region 369074 369134 . ? . description=trf scaffold_52 . repeat_region 369281 369339 . ? . description=dust scaffold_52 . repeat_region 369283 369311 . ? . description=trf scaffold_52 . repeat_region 369550 369569 . ? . description=trf scaffold_52 . repeat_region 373683 373690 . ? . description=dust scaffold_52 ensembl protein_coding_gene 369042 370287 . + . ID=Physo137288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520078;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 369042 370287 . + . ID=Physo137288;Parent=Physo137288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 369042 369765 . + 0 ID=Physo137288;Parent=Physo137288;rank=1 scaffold_52 . exon 369042 369765 . + . ID=Physo137288.1;Parent=Physo137288;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 369840 369886 . + 0 ID=Physo137288;Parent=Physo137288;rank=2 scaffold_52 . exon 369840 369886 . + . ID=Physo137288.2;Parent=Physo137288;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 369970 370229 . + 0 ID=Physo137288;Parent=Physo137288;rank=3 scaffold_52 . exon 369970 370229 . + . ID=Physo137288.3;Parent=Physo137288;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_52 . CDS 370278 370287 . + 0 ID=Physo137288;Parent=Physo137288;rank=4 scaffold_52 . exon 370278 370287 . + . ID=Physo137288.4;Parent=Physo137288;constitutive=1;ensembl_phase=2;rank=4 scaffold_52 ensembl protein_coding_gene 370544 372943 . - . ID=Physo137289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520079;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 370544 372943 . - . ID=Physo137289;Parent=Physo137289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 370544 370771 . - 0 ID=Physo137289;Parent=Physo137289;rank=9 scaffold_52 . exon 370544 370771 . - . ID=Physo137289.9;Parent=Physo137289;constitutive=1;rank=9 scaffold_52 . CDS 370846 371190 . - 0 ID=Physo137289;Parent=Physo137289;rank=8 scaffold_52 . exon 370846 371190 . - . ID=Physo137289.8;Parent=Physo137289;constitutive=1;rank=8 scaffold_52 . CDS 371255 371393 . - 0 ID=Physo137289;Parent=Physo137289;rank=7 scaffold_52 . exon 371255 371393 . - . ID=Physo137289.7;Parent=Physo137289;constitutive=1;ensembl_phase=2;rank=7 scaffold_52 . CDS 371461 371669 . - 0 ID=Physo137289;Parent=Physo137289;rank=6 scaffold_52 . exon 371461 371669 . - . ID=Physo137289.6;Parent=Physo137289;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_52 . CDS 372061 372120 . - 0 ID=Physo137289;Parent=Physo137289;rank=5 scaffold_52 . exon 372061 372120 . - . ID=Physo137289.5;Parent=Physo137289;constitutive=1;rank=5 scaffold_52 . CDS 372201 372284 . - 0 ID=Physo137289;Parent=Physo137289;rank=4 scaffold_52 . exon 372201 372284 . - . ID=Physo137289.4;Parent=Physo137289;constitutive=1;rank=4 scaffold_52 . CDS 372370 372504 . - 0 ID=Physo137289;Parent=Physo137289;rank=3 scaffold_52 . exon 372370 372504 . - . ID=Physo137289.3;Parent=Physo137289;constitutive=1;rank=3 scaffold_52 . CDS 372598 372731 . - 0 ID=Physo137289;Parent=Physo137289;rank=2 scaffold_52 . exon 372598 372731 . - . ID=Physo137289.2;Parent=Physo137289;constitutive=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 372838 372943 . - 0 ID=Physo137289;Parent=Physo137289;rank=1 scaffold_52 . exon 372838 372943 . - . ID=Physo137289.1;Parent=Physo137289;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 ensembl protein_coding_gene 373267 374014 . - . ID=Physo137290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520080;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 373267 374014 . - . ID=Physo137290;Parent=Physo137290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 373267 373673 . - . ID=Physo137290.2;Parent=Physo137290;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_52 . CDS 373362 373673 . - 0 ID=Physo137290;Parent=Physo137290;rank=2 scaffold_52 . CDS 373749 373976 . - 0 ID=Physo137290;Parent=Physo137290;rank=1 scaffold_52 . exon 373749 374014 . - . ID=Physo137290.1;Parent=Physo137290;constitutive=1;ensembl_phase=-1;rank=1 scaffold_52 . biological_region 374504 374507 0.999 + . logic_name=eponine scaffold_52 . biological_region 374623 374626 0.999 - . logic_name=eponine scaffold_52 . biological_region 374688 374690 0.999 - . logic_name=eponine scaffold_52 . biological_region 374703 374705 0.999 - . logic_name=eponine scaffold_52 . biological_region 376492 376492 0.999 + . logic_name=eponine scaffold_52 . biological_region 378903 378906 0.999 + . logic_name=eponine scaffold_52 . biological_region 378926 378931 0.999 + . logic_name=eponine scaffold_52 . biological_region 379021 379024 0.999 - . logic_name=eponine scaffold_52 . biological_region 379039 379045 0.999 - . logic_name=eponine scaffold_52 . biological_region 379047 379048 0.999 + . logic_name=eponine scaffold_52 . biological_region 379097 379102 0.999 + . logic_name=eponine scaffold_52 . biological_region 379479 379483 0.999 - . logic_name=eponine scaffold_52 . biological_region 379495 379500 0.999 - . logic_name=eponine scaffold_52 . biological_region 382675 382677 0.999 + . logic_name=eponine scaffold_52 ensembl protein_coding_gene 375927 377260 . - . ID=Physo109017;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_520010;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 375927 377260 . - . ID=Physo109017;Parent=Physo109017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 375927 377260 . - . ID=Physo109017.1;Parent=Physo109017;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_52 . CDS 376079 377248 . - 0 ID=Physo109017;Parent=Physo109017;rank=1 scaffold_52 ensembl protein_coding_gene 380516 384220 . - . ID=Physo137294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520084;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 380516 384220 . - . ID=Physo137294;Parent=Physo137294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 380516 380686 . - 0 ID=Physo137294;Parent=Physo137294;rank=2 scaffold_52 . exon 380516 380686 . - . ID=Physo137294.2;Parent=Physo137294;constitutive=1;rank=2 scaffold_52 . CDS 380756 384220 . - 0 ID=Physo137294;Parent=Physo137294;rank=1 scaffold_52 . exon 380756 384220 . - . ID=Physo137294.1;Parent=Physo137294;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 374280 375760 . + . ID=Physo157573;biotype=protein_coding;external_name=C_scaffold_52000027;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 374280 375760 . + . ID=Physo157573;Parent=Physo157573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 374280 374354 . + 0 ID=Physo157573;Parent=Physo157573;rank=1 scaffold_52 . exon 374280 374354 . + . ID=Physo157573.1;Parent=Physo157573;constitutive=1;rank=1 scaffold_52 . CDS 374426 375760 . + 0 ID=Physo157573;Parent=Physo157573;rank=2 scaffold_52 . exon 374426 375760 . + . ID=Physo157573.2;Parent=Physo157573;constitutive=1;rank=2 scaffold_52 ensembl protein_coding_gene 378763 380378 . + . ID=Physo157574;biotype=protein_coding;external_name=C_scaffold_52000028;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 378763 380378 . + . ID=Physo157574;Parent=Physo157574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 378763 379569 . + 0 ID=Physo157574;Parent=Physo157574;rank=1 scaffold_52 . exon 378763 379569 . + . ID=Physo157574.1;Parent=Physo157574;constitutive=1;rank=1 scaffold_52 . CDS 379634 379806 . + 0 ID=Physo157574;Parent=Physo157574;rank=2 scaffold_52 . exon 379634 379806 . + . ID=Physo157574.2;Parent=Physo157574;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 379884 380016 . + 0 ID=Physo157574;Parent=Physo157574;rank=3 scaffold_52 . exon 379884 380016 . + . ID=Physo157574.3;Parent=Physo157574;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 380088 380378 . + 0 ID=Physo157574;Parent=Physo157574;rank=4 scaffold_52 . exon 380088 380378 . + . ID=Physo157574.4;Parent=Physo157574;constitutive=1;rank=4 scaffold_52 . repeat_region 387310 387323 . ? . description=dust scaffold_52 . repeat_region 390997 391053 . ? . description=trf scaffold_52 . repeat_region 391008 391064 . ? . description=trf scaffold_52 . repeat_region 391114 391158 . ? . description=trf scaffold_52 . repeat_region 391789 391869 . ? . description=trf scaffold_52 . repeat_region 392517 392564 . ? . description=trf scaffold_52 . repeat_region 392614 392670 . ? . description=trf scaffold_52 . repeat_region 392625 392681 . ? . description=trf scaffold_52 ensembl protein_coding_gene 388662 389086 . - . ID=Physo137295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520085;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 388662 389086 . - . ID=Physo137295;Parent=Physo137295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 388662 388893 . - 0 ID=Physo137295;Parent=Physo137295;rank=2 scaffold_52 . exon 388662 388893 . - . ID=Physo137295.2;Parent=Physo137295;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 388959 389086 . - 0 ID=Physo137295;Parent=Physo137295;rank=1 scaffold_52 . exon 388959 389086 . - . ID=Physo137295.1;Parent=Physo137295;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 390707 391244 . - . ID=Physo137296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520086;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 390707 391244 . - . ID=Physo137296;Parent=Physo137296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 390707 391055 . - 0 ID=Physo137296;Parent=Physo137296;rank=2 scaffold_52 . exon 390707 391055 . - . ID=Physo137296.2;Parent=Physo137296;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 391084 391244 . - 0 ID=Physo137296;Parent=Physo137296;rank=1 scaffold_52 . exon 391084 391244 . - . ID=Physo137296.1;Parent=Physo137296;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 ensembl protein_coding_gene 392434 392971 . + . ID=Physo137297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520087;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 392434 392971 . + . ID=Physo137297;Parent=Physo137297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 392434 392594 . + 0 ID=Physo137297;Parent=Physo137297;rank=1 scaffold_52 . exon 392434 392594 . + . ID=Physo137297.1;Parent=Physo137297;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 392623 392971 . + 0 ID=Physo137297;Parent=Physo137297;rank=2 scaffold_52 . exon 392623 392971 . + . ID=Physo137297.2;Parent=Physo137297;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . biological_region 398151 398153 0.999 - . logic_name=eponine scaffold_52 . biological_region 400814 400814 0.999 + . logic_name=eponine scaffold_52 ensembl protein_coding_gene 394202 395784 . - . ID=Physo137298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520088;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 394202 395784 . - . ID=Physo137298;Parent=Physo137298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 394202 394251 . - 0 ID=Physo137298;Parent=Physo137298;rank=7 scaffold_52 . exon 394202 394251 . - . ID=Physo137298.7;Parent=Physo137298;constitutive=1;ensembl_phase=1;rank=7 scaffold_52 . CDS 394498 394498 . - 0 ID=Physo137298;Parent=Physo137298;rank=6 scaffold_52 . exon 394498 394498 . - . ID=Physo137298.6;Parent=Physo137298;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_52 . CDS 394675 394886 . - 0 ID=Physo137298;Parent=Physo137298;rank=5 scaffold_52 . exon 394675 394886 . - . ID=Physo137298.5;Parent=Physo137298;constitutive=1;ensembl_phase=1;rank=5 scaffold_52 . CDS 394947 395133 . - 0 ID=Physo137298;Parent=Physo137298;rank=4 scaffold_52 . exon 394947 395133 . - . ID=Physo137298.4;Parent=Physo137298;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_52 . CDS 395207 395420 . - 0 ID=Physo137298;Parent=Physo137298;rank=3 scaffold_52 . exon 395207 395420 . - . ID=Physo137298.3;Parent=Physo137298;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 395492 395682 . - 0 ID=Physo137298;Parent=Physo137298;rank=2 scaffold_52 . exon 395492 395682 . - . ID=Physo137298.2;Parent=Physo137298;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 395743 395784 . - 0 ID=Physo137298;Parent=Physo137298;rank=1 scaffold_52 . exon 395743 395784 . - . ID=Physo137298.1;Parent=Physo137298;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 400733 402311 . - . ID=Physo137299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520089;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 400733 402311 . - . ID=Physo137299;Parent=Physo137299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 400733 401058 . - 0 ID=Physo137299;Parent=Physo137299;rank=8 scaffold_52 . exon 400733 401058 . - . ID=Physo137299.8;Parent=Physo137299;constitutive=1;ensembl_phase=1;rank=8 scaffold_52 . CDS 401142 401273 . - 0 ID=Physo137299;Parent=Physo137299;rank=7 scaffold_52 . exon 401142 401273 . - . ID=Physo137299.7;Parent=Physo137299;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_52 . CDS 401341 401426 . - 0 ID=Physo137299;Parent=Physo137299;rank=6 scaffold_52 . exon 401341 401426 . - . ID=Physo137299.6;Parent=Physo137299;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_52 . CDS 401509 401518 . - 0 ID=Physo137299;Parent=Physo137299;rank=5 scaffold_52 . exon 401509 401518 . - . ID=Physo137299.5;Parent=Physo137299;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_52 . CDS 401723 401830 . - 0 ID=Physo137299;Parent=Physo137299;rank=4 scaffold_52 . exon 401723 401830 . - . ID=Physo137299.4;Parent=Physo137299;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_52 . CDS 401917 401999 . - 0 ID=Physo137299;Parent=Physo137299;rank=3 scaffold_52 . exon 401917 401999 . - . ID=Physo137299.3;Parent=Physo137299;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 402061 402146 . - 0 ID=Physo137299;Parent=Physo137299;rank=2 scaffold_52 . exon 402061 402146 . - . ID=Physo137299.2;Parent=Physo137299;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_52 . CDS 402267 402311 . - 0 ID=Physo137299;Parent=Physo137299;rank=1 scaffold_52 . exon 402267 402311 . - . ID=Physo137299.1;Parent=Physo137299;constitutive=1;rank=1 scaffold_52 . repeat_region 404433 404440 . ? . description=dust scaffold_52 . repeat_region 405129 405137 . ? . description=dust scaffold_52 . repeat_region 405772 405789 . ? . description=dust scaffold_52 . repeat_region 406552 406590 . ? . description=trf scaffold_52 . repeat_region 409373 409414 . ? . description=dust scaffold_52 . repeat_region 409373 409414 . ? . description=trf scaffold_52 . repeat_region 409430 409466 . ? . description=trf scaffold_52 . repeat_region 409435 409468 . ? . description=trf scaffold_52 . repeat_region 412184 412205 . ? . description=dust scaffold_52 . repeat_region 413149 413200 . ? . description=trf scaffold_52 . repeat_region 413356 413363 . ? . description=dust scaffold_52 ensembl protein_coding_gene 411005 412065 . - . ID=Physo137300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520090;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 411005 412065 . - . ID=Physo137300;Parent=Physo137300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 411005 411166 . - 0 ID=Physo137300;Parent=Physo137300;rank=4 scaffold_52 . exon 411005 411166 . - . ID=Physo137300.4;Parent=Physo137300;constitutive=1;rank=4 scaffold_52 . CDS 411304 411583 . - 0 ID=Physo137300;Parent=Physo137300;rank=3 scaffold_52 . exon 411304 411583 . - . ID=Physo137300.3;Parent=Physo137300;constitutive=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 411628 411741 . - 0 ID=Physo137300;Parent=Physo137300;rank=2 scaffold_52 . exon 411628 411741 . - . ID=Physo137300.2;Parent=Physo137300;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 411932 412065 . - 0 ID=Physo137300;Parent=Physo137300;rank=1 scaffold_52 . exon 411932 412065 . - . ID=Physo137300.1;Parent=Physo137300;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . biological_region 414950 414950 0.999 + . logic_name=eponine scaffold_52 . biological_region 416186 416190 0.999 - . logic_name=eponine scaffold_52 . biological_region 419713 419714 0.999 + . logic_name=eponine scaffold_52 . biological_region 419803 419806 0.999 + . logic_name=eponine scaffold_52 . biological_region 419886 419890 0.999 - . logic_name=eponine scaffold_52 . biological_region 419902 419902 0.999 - . logic_name=eponine scaffold_52 . biological_region 421379 421381 0.999 - . logic_name=eponine scaffold_52 . biological_region 421568 421572 0.999 + . logic_name=eponine scaffold_52 . biological_region 421720 421721 0.999 - . logic_name=eponine scaffold_52 . biological_region 421730 421736 0.999 + . logic_name=eponine scaffold_52 . biological_region 421755 421757 0.999 - . logic_name=eponine scaffold_52 . biological_region 421972 421976 0.999 - . logic_name=eponine scaffold_52 . biological_region 422258 422259 0.999 + . logic_name=eponine scaffold_52 . biological_region 422311 422313 0.999 + . logic_name=eponine scaffold_52 . repeat_region 422614 422692 . + . description=(TG)n scaffold_52 ensembl protein_coding_gene 416412 418619 . + . ID=Physo109018;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_520011;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 416412 418619 . + . ID=Physo109018;Parent=Physo109018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 416412 418619 . + 0 ID=Physo109018;Parent=Physo109018;rank=1 scaffold_52 . exon 416412 418619 . + . ID=Physo109018.1;Parent=Physo109018;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 422295 423980 . + . ID=Physo118383;biotype=protein_coding;external_name=estExt_Genewise1.C_520023;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 422295 423980 . + . ID=Physo118383;Parent=Physo118383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . exon 422295 422569 . + . ID=Physo118383.1;Parent=Physo118383;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_52 . CDS 422554 422569 . + 0 ID=Physo118383;Parent=Physo118383;rank=1 scaffold_52 . CDS 422695 423019 . + 0 ID=Physo118383;Parent=Physo118383;rank=2 scaffold_52 . exon 422695 423019 . + . ID=Physo118383.2;Parent=Physo118383;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_52 . CDS 423115 423398 . + 0 ID=Physo118383;Parent=Physo118383;rank=3 scaffold_52 . exon 423115 423398 . + . ID=Physo118383.3;Parent=Physo118383;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_52 . CDS 423490 423565 . + 0 ID=Physo118383;Parent=Physo118383;rank=4 scaffold_52 . CDS 423633 423751 . + 0 ID=Physo118383;Parent=Physo118383;rank=5 scaffold_52 . CDS 423820 423980 . + 0 ID=Physo118383;Parent=Physo118383;rank=6 scaffold_52 ensembl protein_coding_gene 419083 421825 . + . ID=Physo137302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520092;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 419083 421825 . + . ID=Physo137302;Parent=Physo137302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 419083 419153 . + 0 ID=Physo137302;Parent=Physo137302;rank=1 scaffold_52 . exon 419083 419153 . + . ID=Physo137302.1;Parent=Physo137302;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 419451 419577 . + 0 ID=Physo137302;Parent=Physo137302;rank=2 scaffold_52 . exon 419451 419577 . + . ID=Physo137302.2;Parent=Physo137302;constitutive=1;ensembl_phase=2;rank=2 scaffold_52 . CDS 419675 419911 . + 0 ID=Physo137302;Parent=Physo137302;rank=3 scaffold_52 . exon 419675 419911 . + . ID=Physo137302.3;Parent=Physo137302;constitutive=1;rank=3 scaffold_52 . CDS 420009 420083 . + 0 ID=Physo137302;Parent=Physo137302;rank=4 scaffold_52 . exon 420009 420083 . + . ID=Physo137302.4;Parent=Physo137302;constitutive=1;rank=4 scaffold_52 . CDS 420157 420265 . + 0 ID=Physo137302;Parent=Physo137302;rank=5 scaffold_52 . exon 420157 420265 . + . ID=Physo137302.5;Parent=Physo137302;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_52 . CDS 420346 420694 . + 0 ID=Physo137302;Parent=Physo137302;rank=6 scaffold_52 . exon 420346 420694 . + . ID=Physo137302.6;Parent=Physo137302;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_52 . CDS 420767 420836 . + 0 ID=Physo137302;Parent=Physo137302;rank=7 scaffold_52 . exon 420767 420836 . + . ID=Physo137302.7;Parent=Physo137302;constitutive=1;ensembl_phase=2;rank=7 scaffold_52 . CDS 420927 420995 . + 0 ID=Physo137302;Parent=Physo137302;rank=8 scaffold_52 . exon 420927 420995 . + . ID=Physo137302.8;Parent=Physo137302;constitutive=1;rank=8 scaffold_52 . CDS 421074 421156 . + 0 ID=Physo137302;Parent=Physo137302;rank=9 scaffold_52 . exon 421074 421156 . + . ID=Physo137302.9;Parent=Physo137302;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_52 . CDS 421257 421494 . + 0 ID=Physo137302;Parent=Physo137302;rank=10 scaffold_52 . exon 421257 421494 . + . ID=Physo137302.10;Parent=Physo137302;constitutive=1;ensembl_phase=2;rank=10 scaffold_52 . CDS 421584 421811 . + 0 ID=Physo137302;Parent=Physo137302;rank=11 scaffold_52 . exon 421584 421825 . + . ID=Physo137302.11;Parent=Physo137302;constitutive=1;ensembl_end_phase=-1;rank=11 scaffold_52 . repeat_region 426867 426875 . ? . description=dust scaffold_52 . repeat_region 429235 429336 . ? . description=trf scaffold_52 . repeat_region 429266 429289 . ? . description=trf scaffold_52 . repeat_region 429401 431786 . - . description=GypsyPi-1c_I-int scaffold_52 . exon 423490 423565 . + . ID=Physo118383.4;Parent=Physo118383;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_52 . exon 423633 423751 . + . ID=Physo118383.5;Parent=Physo118383;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_52 . exon 423820 423980 . + . ID=Physo118383.6;Parent=Physo118383;constitutive=1;ensembl_phase=1;rank=6 scaffold_52 ensembl protein_coding_gene 424569 425849 . - . ID=Physo137304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520094;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 424569 425849 . - . ID=Physo137304;Parent=Physo137304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 424569 425648 . - 0 ID=Physo137304;Parent=Physo137304;rank=2 scaffold_52 . exon 424569 425648 . - . ID=Physo137304.2;Parent=Physo137304;constitutive=1;rank=2 scaffold_52 . CDS 425670 425849 . - 0 ID=Physo137304;Parent=Physo137304;rank=1 scaffold_52 . exon 425670 425849 . - . ID=Physo137304.1;Parent=Physo137304;constitutive=1;rank=1 scaffold_52 ensembl protein_coding_gene 429074 432409 . - . ID=Physo137305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520095;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 429074 432409 . - . ID=Physo137305;Parent=Physo137305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 429074 431210 . - 0 ID=Physo137305;Parent=Physo137305;rank=4 scaffold_52 . exon 429074 431210 . - . ID=Physo137305.4;Parent=Physo137305;constitutive=1;ensembl_phase=2;rank=4 scaffold_52 . CDS 431283 431758 . - 0 ID=Physo137305;Parent=Physo137305;rank=3 scaffold_52 . exon 431283 431758 . - . ID=Physo137305.3;Parent=Physo137305;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_52 . CDS 431784 432089 . - 0 ID=Physo137305;Parent=Physo137305;rank=2 scaffold_52 . exon 431784 432089 . - . ID=Physo137305.2;Parent=Physo137305;constitutive=1;rank=2 scaffold_52 . CDS 432203 432409 . - 0 ID=Physo137305;Parent=Physo137305;rank=1 scaffold_52 . exon 432203 432409 . - . ID=Physo137305.1;Parent=Physo137305;constitutive=1;rank=1 scaffold_52 . biological_region 440467 440469 0.999 + . logic_name=eponine scaffold_52 . biological_region 440559 440560 0.999 - . logic_name=eponine scaffold_52 ensembl protein_coding_gene 440400 441873 . + . ID=Physo137306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520096;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 440400 441873 . + . ID=Physo137306;Parent=Physo137306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 440400 440631 . + 0 ID=Physo137306;Parent=Physo137306;rank=1 scaffold_52 . exon 440400 440631 . + . ID=Physo137306.1;Parent=Physo137306;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 . CDS 440843 441259 . + 0 ID=Physo137306;Parent=Physo137306;rank=2 scaffold_52 . exon 440843 441259 . + . ID=Physo137306.2;Parent=Physo137306;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_52 . CDS 441498 441722 . + 0 ID=Physo137306;Parent=Physo137306;rank=3 scaffold_52 . exon 441498 441722 . + . ID=Physo137306.3;Parent=Physo137306;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_52 . CDS 441761 441873 . + 0 ID=Physo137306;Parent=Physo137306;rank=4 scaffold_52 . exon 441761 441873 . + . ID=Physo137306.4;Parent=Physo137306;constitutive=1;ensembl_phase=1;rank=4 scaffold_52 . repeat_region 444772 444811 . ? . description=trf scaffold_52 . repeat_region 444805 444848 . ? . description=trf scaffold_52 . repeat_region 446434 446441 . ? . description=dust scaffold_52 . repeat_region 448576 448584 . ? . description=dust scaffold_52 . repeat_region 449384 449391 . ? . description=dust scaffold_52 . repeat_region 450134 450169 . + . description=GypsyPi-1c_I-int scaffold_52 . repeat_region 450340 450421 . - . description=Polinton-1_PI scaffold_52 . biological_region 454110 454114 0.999 - . logic_name=eponine scaffold_52 . biological_region 454125 454128 0.999 + . logic_name=eponine scaffold_52 . biological_region 454154 454155 0.999 + . logic_name=eponine scaffold_52 . biological_region 454185 454188 0.999 - . logic_name=eponine scaffold_52 . biological_region 454210 454214 0.999 - . logic_name=eponine scaffold_52 . biological_region 454487 454491 0.999 - . logic_name=eponine scaffold_52 . biological_region 455030 455034 0.999 + . logic_name=eponine scaffold_52 . biological_region 455674 455678 0.999 - . logic_name=eponine scaffold_52 . biological_region 455751 455755 0.999 + . logic_name=eponine scaffold_52 . biological_region 455842 455848 0.999 - . logic_name=eponine scaffold_52 . biological_region 458046 458052 0.999 - . logic_name=eponine scaffold_52 . biological_region 458060 458064 0.999 + . logic_name=eponine scaffold_52 . biological_region 458316 458317 0.999 + . logic_name=eponine scaffold_52 . biological_region 458831 458835 0.999 + . logic_name=eponine scaffold_52 . biological_region 458945 458948 0.999 - . logic_name=eponine scaffold_52 . biological_region 458953 458957 0.999 + . logic_name=eponine scaffold_52 . biological_region 459119 459124 0.999 - . logic_name=eponine scaffold_52 . biological_region 459142 459146 0.999 - . logic_name=eponine scaffold_52 . biological_region 459167 459170 0.999 - . logic_name=eponine scaffold_52 . biological_region 459574 459575 0.999 - . logic_name=eponine scaffold_52 . biological_region 462333 462337 0.999 - . logic_name=eponine scaffold_52 . biological_region 462359 462360 0.999 - . logic_name=eponine scaffold_52 . biological_region 462384 462384 0.999 - . logic_name=eponine scaffold_52 ensembl tRNA_gene 462587 462658 . - . ID=EPrPSOG00000000023;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_52 ensembl transcript 462587 462658 . - . ID=EPrPSOT00000000023;Parent=EPrPSOG00000000023;biotype=tRNA;logic_name=ncrna_eg scaffold_52 ensembl tRNA_gene 462014 462086 . - . ID=EPrPSOG00000000091;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_52 ensembl transcript 462014 462086 . - . ID=EPrPSOT00000000091;Parent=EPrPSOG00000000091;biotype=tRNA;logic_name=ncrna_eg scaffold_52 . exon 462587 462658 . - . ID=EPrPSOE00000000023;Parent=EPrPSOT00000000023;constitutive=1;rank=1 scaffold_52 . exon 462014 462086 . - . ID=EPrPSOE00000000091;Parent=EPrPSOT00000000091;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_52 ensembl protein_coding_gene 453285 457680 . + . ID=Physo137307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_520097;logic_name=jgi_physo1_1 scaffold_52 ensembl transcript 453285 457680 . + . ID=Physo137307;Parent=Physo137307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_52 . CDS 453285 453829 . + 0 ID=Physo137307;Parent=Physo137307;rank=1 scaffold_52 . exon 453285 453829 . + . ID=Physo137307.1;Parent=Physo137307;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_52 . CDS 453899 454300 . + 0 ID=Physo137307;Parent=Physo137307;rank=2 scaffold_52 . exon 453899 454300 . + . ID=Physo137307.2;Parent=Physo137307;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_52 . CDS 454368 454709 . + 0 ID=Physo137307;Parent=Physo137307;rank=3 scaffold_52 . exon 454368 454709 . + . ID=Physo137307.3;Parent=Physo137307;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_52 . CDS 455009 456375 . + 0 ID=Physo137307;Parent=Physo137307;rank=4 scaffold_52 . exon 455009 456375 . + . ID=Physo137307.4;Parent=Physo137307;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_52 . CDS 456644 457680 . + 0 ID=Physo137307;Parent=Physo137307;rank=5 scaffold_52 . exon 456644 457680 . + . ID=Physo137307.5;Parent=Physo137307;constitutive=1;ensembl_phase=1;rank=5 ##gff-version 3 ##sequence-region scaffold_54 1 464398 scaffold_54 . repeat_region 754 873 . ? . description=trf scaffold_54 . repeat_region 1831 1852 . ? . description=trf scaffold_54 . repeat_region 2984 3015 . ? . description=trf scaffold_54 . repeat_region 3403 3452 . ? . description=dust scaffold_54 . biological_region 4704 4706 0.999 + . logic_name=eponine scaffold_54 . repeat_region 5274 5294 . ? . description=dust scaffold_54 . biological_region 7260 7261 0.999 + . logic_name=eponine scaffold_54 . biological_region 7277 7278 0.999 - . logic_name=eponine scaffold_54 . biological_region 7358 7360 0.999 - . logic_name=eponine scaffold_54 . biological_region 7665 7668 0.999 - . logic_name=eponine scaffold_54 . biological_region 7903 7904 0.999 - . logic_name=eponine scaffold_54 . biological_region 7939 7940 0.999 - . logic_name=eponine scaffold_54 . biological_region 8397 8400 0.999 - . logic_name=eponine scaffold_54 . biological_region 8407 8413 0.999 + . logic_name=eponine scaffold_54 . biological_region 8502 8507 0.999 + . logic_name=eponine scaffold_54 . biological_region 8554 8557 0.999 + . logic_name=eponine scaffold_54 . biological_region 8589 8591 0.999 + . logic_name=eponine scaffold_54 . repeat_region 8888 8921 . ? . description=trf scaffold_54 ensembl snoRNA_gene 3557 3780 . + . ID=EPrPSOG00000000248;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_54 ensembl snoRNA 3557 3780 . + . ID=EPrPSOT00000000248;Parent=EPrPSOG00000000248;biotype=snoRNA;logic_name=ncrna_eg scaffold_54 . exon 3557 3780 . + . ID=EPrPSOE00000000248;Parent=EPrPSOT00000000248;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 6852 7990 . + . ID=Physo109027;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540001;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 6852 7990 . + . ID=Physo109027;Parent=Physo109027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 6852 7990 . + . ID=Physo109027.1;Parent=Physo109027;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_54 . CDS 6882 7736 . + 0 ID=Physo109027;Parent=Physo109027;rank=1 scaffold_54 ensembl protein_coding_gene 4489 6606 . - . ID=Physo137415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540001;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 4489 6606 . - . ID=Physo137415;Parent=Physo137415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 4489 4649 . - 0 ID=Physo137415;Parent=Physo137415;rank=11 scaffold_54 . exon 4489 4649 . - . ID=Physo137415.11;Parent=Physo137415;constitutive=1;ensembl_phase=1;rank=11 scaffold_54 . CDS 4720 4844 . - 0 ID=Physo137415;Parent=Physo137415;rank=10 scaffold_54 . exon 4720 4844 . - . ID=Physo137415.10;Parent=Physo137415;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_54 . CDS 4910 4950 . - 0 ID=Physo137415;Parent=Physo137415;rank=9 scaffold_54 . exon 4910 4950 . - . ID=Physo137415.9;Parent=Physo137415;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_54 . CDS 5017 5142 . - 0 ID=Physo137415;Parent=Physo137415;rank=8 scaffold_54 . exon 5017 5142 . - . ID=Physo137415.8;Parent=Physo137415;constitutive=1;rank=8 scaffold_54 . CDS 5337 5405 . - 0 ID=Physo137415;Parent=Physo137415;rank=7 scaffold_54 . exon 5337 5405 . - . ID=Physo137415.7;Parent=Physo137415;constitutive=1;rank=7 scaffold_54 . CDS 5470 5574 . - 0 ID=Physo137415;Parent=Physo137415;rank=6 scaffold_54 . exon 5470 5574 . - . ID=Physo137415.6;Parent=Physo137415;constitutive=1;rank=6 scaffold_54 . CDS 5668 5781 . - 0 ID=Physo137415;Parent=Physo137415;rank=5 scaffold_54 . exon 5668 5781 . - . ID=Physo137415.5;Parent=Physo137415;constitutive=1;rank=5 scaffold_54 . CDS 5853 5930 . - 0 ID=Physo137415;Parent=Physo137415;rank=4 scaffold_54 . exon 5853 5930 . - . ID=Physo137415.4;Parent=Physo137415;constitutive=1;rank=4 scaffold_54 . CDS 5986 6072 . - 0 ID=Physo137415;Parent=Physo137415;rank=3 scaffold_54 . exon 5986 6072 . - . ID=Physo137415.3;Parent=Physo137415;constitutive=1;rank=3 scaffold_54 . CDS 6140 6238 . - 0 ID=Physo137415;Parent=Physo137415;rank=2 scaffold_54 . exon 6140 6238 . - . ID=Physo137415.2;Parent=Physo137415;constitutive=1;rank=2 scaffold_54 . CDS 6325 6606 . - 0 ID=Physo137415;Parent=Physo137415;rank=1 scaffold_54 . exon 6325 6606 . - . ID=Physo137415.1;Parent=Physo137415;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 8260 10864 . + . ID=Physo137417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540003;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 8260 10864 . + . ID=Physo137417;Parent=Physo137417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 8260 8828 . + 0 ID=Physo137417;Parent=Physo137417;rank=1 scaffold_54 . exon 8260 8828 . + . ID=Physo137417.1;Parent=Physo137417;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 8933 9065 . + 0 ID=Physo137417;Parent=Physo137417;rank=2 scaffold_54 . exon 8933 9065 . + . ID=Physo137417.2;Parent=Physo137417;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 9145 10530 . + 0 ID=Physo137417;Parent=Physo137417;rank=3 scaffold_54 . exon 9145 10530 . + . ID=Physo137417.3;Parent=Physo137417;constitutive=1;rank=3 scaffold_54 . CDS 10605 10757 . + 0 ID=Physo137417;Parent=Physo137417;rank=4 scaffold_54 . CDS 10847 10864 . + 0 ID=Physo137417;Parent=Physo137417;rank=5 scaffold_54 . exon 10605 10757 . + . ID=Physo137417.4;Parent=Physo137417;constitutive=1;rank=4 scaffold_54 . exon 10847 10864 . + . ID=Physo137417.5;Parent=Physo137417;constitutive=1;rank=5 scaffold_54 ensembl protein_coding_gene 11158 12516 . + . ID=Physo137418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540004;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 11158 12516 . + . ID=Physo137418;Parent=Physo137418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 11158 11541 . + . ID=Physo137418.1;Parent=Physo137418;constitutive=1;ensembl_phase=-1;rank=1 scaffold_54 . CDS 11170 11541 . + 0 ID=Physo137418;Parent=Physo137418;rank=1 scaffold_54 . CDS 11612 11830 . + 0 ID=Physo137418;Parent=Physo137418;rank=2 scaffold_54 . exon 11612 11830 . + . ID=Physo137418.2;Parent=Physo137418;constitutive=1;rank=2 scaffold_54 . CDS 11926 12079 . + 0 ID=Physo137418;Parent=Physo137418;rank=3 scaffold_54 . exon 11926 12079 . + . ID=Physo137418.3;Parent=Physo137418;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_54 . CDS 12156 12274 . + 0 ID=Physo137418;Parent=Physo137418;rank=4 scaffold_54 . exon 12156 12274 . + . ID=Physo137418.4;Parent=Physo137418;constitutive=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 12346 12516 . + 0 ID=Physo137418;Parent=Physo137418;rank=5 scaffold_54 . exon 12346 12516 . + . ID=Physo137418.5;Parent=Physo137418;constitutive=1;rank=5 scaffold_54 ensembl protein_coding_gene 12581 13533 . - . ID=Physo137419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540005;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 12581 13533 . - . ID=Physo137419;Parent=Physo137419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 12581 13533 . - . ID=Physo137419.1;Parent=Physo137419;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_54 . CDS 12677 13531 . - 0 ID=Physo137419;Parent=Physo137419;rank=1 scaffold_54 ensembl protein_coding_gene 14324 15199 . + . ID=Physo137420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540006;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 14324 15199 . + . ID=Physo137420;Parent=Physo137420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 14324 14874 . + 0 ID=Physo137420;Parent=Physo137420;rank=1 scaffold_54 . exon 14324 14874 . + . ID=Physo137420.1;Parent=Physo137420;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 14950 15199 . + 0 ID=Physo137420;Parent=Physo137420;rank=2 scaffold_54 . exon 14950 15199 . + . ID=Physo137420.2;Parent=Physo137420;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 ensembl protein_coding_gene 15810 17016 . + . ID=Physo137421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540007;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 15810 17016 . + . ID=Physo137421;Parent=Physo137421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 15810 16174 . + 0 ID=Physo137421;Parent=Physo137421;rank=1 scaffold_54 . exon 15810 16174 . + . ID=Physo137421.1;Parent=Physo137421;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 16207 16324 . + 0 ID=Physo137421;Parent=Physo137421;rank=2 scaffold_54 . exon 16207 16324 . + . ID=Physo137421.2;Parent=Physo137421;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 16369 16587 . + 0 ID=Physo137421;Parent=Physo137421;rank=3 scaffold_54 . exon 16369 16587 . + . ID=Physo137421.3;Parent=Physo137421;constitutive=1;rank=3 scaffold_54 . CDS 16614 16643 . + 0 ID=Physo137421;Parent=Physo137421;rank=4 scaffold_54 . exon 16614 16643 . + . ID=Physo137421.4;Parent=Physo137421;constitutive=1;rank=4 scaffold_54 . CDS 16699 17016 . + 0 ID=Physo137421;Parent=Physo137421;rank=5 scaffold_54 . exon 16699 17016 . + . ID=Physo137421.5;Parent=Physo137421;constitutive=1;rank=5 scaffold_54 ensembl protein_coding_gene 18704 20754 . + . ID=Physo137422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540008;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 18704 20754 . + . ID=Physo137422;Parent=Physo137422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 18704 20211 . + 0 ID=Physo137422;Parent=Physo137422;rank=1 scaffold_54 . exon 18704 20211 . + . ID=Physo137422.1;Parent=Physo137422;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 20365 20719 . + 0 ID=Physo137422;Parent=Physo137422;rank=2 scaffold_54 . CDS 20740 20754 . + 0 ID=Physo137422;Parent=Physo137422;rank=3 scaffold_54 . biological_region 21111 21112 0.999 + . logic_name=eponine scaffold_54 . repeat_region 23318 23326 . ? . description=dust scaffold_54 . biological_region 23628 23629 0.999 - . logic_name=eponine scaffold_54 . repeat_region 26060 26067 . ? . description=dust scaffold_54 . repeat_region 26909 26963 . ? . description=trf scaffold_54 . repeat_region 27096 27149 . ? . description=trf scaffold_54 ensembl protein_coding_gene 20950 22461 . + . ID=Physo109028;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540002;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 20950 22461 . + . ID=Physo109028;Parent=Physo109028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 20950 22461 . + 0 ID=Physo109028;Parent=Physo109028;rank=1 scaffold_54 . exon 20950 22461 . + . ID=Physo109028.1;Parent=Physo109028;constitutive=1;rank=1 scaffold_54 . exon 20365 20719 . + . ID=Physo137422.2;Parent=Physo137422;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . exon 20740 20754 . + . ID=Physo137422.3;Parent=Physo137422;constitutive=1;rank=3 scaffold_54 ensembl protein_coding_gene 32721 36792 . - . ID=Physo137424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540010;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 32721 36792 . - . ID=Physo137424;Parent=Physo137424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 32721 33021 . - 0 ID=Physo137424;Parent=Physo137424;rank=4 scaffold_54 . exon 32721 33021 . - . ID=Physo137424.4;Parent=Physo137424;constitutive=1;ensembl_phase=2;rank=4 scaffold_54 . CDS 33086 35679 . - 0 ID=Physo137424;Parent=Physo137424;rank=3 scaffold_54 . exon 33086 35679 . - . ID=Physo137424.3;Parent=Physo137424;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_54 . CDS 35758 36102 . - 0 ID=Physo137424;Parent=Physo137424;rank=2 scaffold_54 . exon 35758 36102 . - . ID=Physo137424.2;Parent=Physo137424;constitutive=1;rank=2 scaffold_54 . CDS 36241 36792 . - 0 ID=Physo137424;Parent=Physo137424;rank=1 scaffold_54 . exon 36241 36792 . - . ID=Physo137424.1;Parent=Physo137424;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 38588 39115 . + . ID=Physo137425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540011;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 38588 39115 . + . ID=Physo137425;Parent=Physo137425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 38588 39115 . + 0 ID=Physo137425;Parent=Physo137425;rank=1 scaffold_54 . exon 38588 39115 . + . ID=Physo137425.1;Parent=Physo137425;constitutive=1;rank=1 scaffold_54 . repeat_region 41539 41547 . ? . description=dust scaffold_54 . repeat_region 43298 47293 . + . description=Polinton-1_PI scaffold_54 . repeat_region 43992 43999 . ? . description=dust scaffold_54 . repeat_region 46913 46921 . ? . description=dust scaffold_54 . repeat_region 47795 47925 . + . description=Polinton-1_PI scaffold_54 . repeat_region 47945 48015 . + . description=Polinton-1_PI scaffold_54 . repeat_region 48031 48120 . + . description=Polinton-1_PI scaffold_54 . biological_region 49017 49020 0.999 + . logic_name=eponine scaffold_54 . biological_region 49330 49333 0.999 + . logic_name=eponine scaffold_54 . repeat_region 49464 49536 . ? . description=trf scaffold_54 . repeat_region 56577 56596 . ? . description=trf scaffold_54 ensembl protein_coding_gene 52659 53732 . + . ID=Physo109029;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540003;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 52659 53732 . + . ID=Physo109029;Parent=Physo109029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 52659 53732 . + 0 ID=Physo109029;Parent=Physo109029;rank=1 scaffold_54 . exon 52659 53732 . + . ID=Physo109029.1;Parent=Physo109029;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 58583 60275 . + . ID=Physo109030;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540004;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 58583 60275 . + . ID=Physo109030;Parent=Physo109030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 58583 58775 . + 0 ID=Physo109030;Parent=Physo109030;rank=1 scaffold_54 . exon 58583 58775 . + . ID=Physo109030.1;Parent=Physo109030;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 58835 58950 . + 0 ID=Physo109030;Parent=Physo109030;rank=2 scaffold_54 . exon 58835 58950 . + . ID=Physo109030.2;Parent=Physo109030;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 59022 60275 . + 0 ID=Physo109030;Parent=Physo109030;rank=3 scaffold_54 . exon 59022 60275 . + . ID=Physo109030.3;Parent=Physo109030;constitutive=1;rank=3 scaffold_54 ensembl protein_coding_gene 50841 52140 . - . ID=Physo137426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540012;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 50841 52140 . - . ID=Physo137426;Parent=Physo137426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 50841 51494 . - 0 ID=Physo137426;Parent=Physo137426;rank=4 scaffold_54 . exon 50841 51494 . - . ID=Physo137426.4;Parent=Physo137426;constitutive=1;rank=4 scaffold_54 . CDS 51533 51546 . - 0 ID=Physo137426;Parent=Physo137426;rank=3 scaffold_54 . exon 51533 51546 . - . ID=Physo137426.3;Parent=Physo137426;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 51829 51936 . - 0 ID=Physo137426;Parent=Physo137426;rank=2 scaffold_54 . exon 51829 51936 . - . ID=Physo137426.2;Parent=Physo137426;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 52098 52140 . - 0 ID=Physo137426;Parent=Physo137426;rank=1 scaffold_54 . exon 52098 52140 . - . ID=Physo137426.1;Parent=Physo137426;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 ensembl protein_coding_gene 53935 55107 . + . ID=Physo137428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540014;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 53935 55107 . + . ID=Physo137428;Parent=Physo137428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 53935 54314 . + . ID=Physo137428.1;Parent=Physo137428;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_54 . CDS 53974 54314 . + 0 ID=Physo137428;Parent=Physo137428;rank=1 scaffold_54 . CDS 54441 55107 . + 0 ID=Physo137428;Parent=Physo137428;rank=2 scaffold_54 . exon 54441 55107 . + . ID=Physo137428.2;Parent=Physo137428;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 ensembl protein_coding_gene 55242 56344 . - . ID=Physo137429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540015;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 55242 56344 . - . ID=Physo137429;Parent=Physo137429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 55242 55560 . - 0 ID=Physo137429;Parent=Physo137429;rank=4 scaffold_54 . exon 55242 55560 . - . ID=Physo137429.4;Parent=Physo137429;constitutive=1;ensembl_phase=2;rank=4 scaffold_54 . CDS 55638 55818 . - 0 ID=Physo137429;Parent=Physo137429;rank=3 scaffold_54 . exon 55638 55818 . - . ID=Physo137429.3;Parent=Physo137429;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_54 . CDS 55897 56032 . - 0 ID=Physo137429;Parent=Physo137429;rank=2 scaffold_54 . exon 55897 56032 . - . ID=Physo137429.2;Parent=Physo137429;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_54 . CDS 56111 56344 . - 0 ID=Physo137429;Parent=Physo137429;rank=1 scaffold_54 . exon 56111 56344 . - . ID=Physo137429.1;Parent=Physo137429;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 56662 58377 . + . ID=Physo137430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540016;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 56662 58377 . + . ID=Physo137430;Parent=Physo137430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 56662 56946 . + 0 ID=Physo137430;Parent=Physo137430;rank=1 scaffold_54 . exon 56662 56946 . + . ID=Physo137430.1;Parent=Physo137430;constitutive=1;rank=1 scaffold_54 . CDS 57152 57228 . + 0 ID=Physo137430;Parent=Physo137430;rank=2 scaffold_54 . exon 57152 57228 . + . ID=Physo137430.2;Parent=Physo137430;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 57254 57488 . + 0 ID=Physo137430;Parent=Physo137430;rank=3 scaffold_54 . exon 57254 57488 . + . ID=Physo137430.3;Parent=Physo137430;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 57547 58377 . + 0 ID=Physo137430;Parent=Physo137430;rank=4 scaffold_54 . exon 57547 58377 . + . ID=Physo137430.4;Parent=Physo137430;constitutive=1;rank=4 scaffold_54 . biological_region 62087 62090 0.999 - . logic_name=eponine scaffold_54 . repeat_region 65748 65760 . ? . description=dust scaffold_54 . repeat_region 67651 67781 . + . description=Gypsy-1-LTR_PI scaffold_54 . repeat_region 67797 70460 . + . description=Gypsy-2-I_PI-int scaffold_54 ensembl protein_coding_gene 60512 61387 . + . ID=Physo137432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540018;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 60512 61387 . + . ID=Physo137432;Parent=Physo137432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 60512 61062 . + 0 ID=Physo137432;Parent=Physo137432;rank=1 scaffold_54 . exon 60512 61062 . + . ID=Physo137432.1;Parent=Physo137432;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 61138 61387 . + 0 ID=Physo137432;Parent=Physo137432;rank=2 scaffold_54 . exon 61138 61387 . + . ID=Physo137432.2;Parent=Physo137432;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 ensembl protein_coding_gene 61994 63195 . + . ID=Physo137433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540019;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 61994 63195 . + . ID=Physo137433;Parent=Physo137433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 61994 62358 . + 0 ID=Physo137433;Parent=Physo137433;rank=1 scaffold_54 . exon 61994 62358 . + . ID=Physo137433.1;Parent=Physo137433;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 62391 62772 . + 0 ID=Physo137433;Parent=Physo137433;rank=2 scaffold_54 . exon 62391 62772 . + . ID=Physo137433.2;Parent=Physo137433;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 62799 62828 . + 0 ID=Physo137433;Parent=Physo137433;rank=3 scaffold_54 . exon 62799 62828 . + . ID=Physo137433.3;Parent=Physo137433;constitutive=1;rank=3 scaffold_54 . CDS 62884 63195 . + 0 ID=Physo137433;Parent=Physo137433;rank=4 scaffold_54 . exon 62884 63195 . + . ID=Physo137433.4;Parent=Physo137433;constitutive=1;rank=4 scaffold_54 ensembl protein_coding_gene 67841 70276 . + . ID=Physo137434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540020;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 67841 70276 . + . ID=Physo137434;Parent=Physo137434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 67841 68072 . + 0 ID=Physo137434;Parent=Physo137434;rank=1 scaffold_54 . exon 67841 68072 . + . ID=Physo137434.1;Parent=Physo137434;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 68247 68648 . + 0 ID=Physo137434;Parent=Physo137434;rank=2 scaffold_54 . exon 68247 68648 . + . ID=Physo137434.2;Parent=Physo137434;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 68777 69005 . + 0 ID=Physo137434;Parent=Physo137434;rank=3 scaffold_54 . exon 68777 69005 . + . ID=Physo137434.3;Parent=Physo137434;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_54 . CDS 69210 70190 . + 0 ID=Physo137434;Parent=Physo137434;rank=4 scaffold_54 . CDS 70261 70276 . + 0 ID=Physo137434;Parent=Physo137434;rank=5 scaffold_54 . repeat_region 73461 73512 . ? . description=trf scaffold_54 . repeat_region 73461 73521 . ? . description=trf scaffold_54 . exon 69210 70190 . + . ID=Physo137434.4;Parent=Physo137434;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_54 . exon 70261 70276 . + . ID=Physo137434.5;Parent=Physo137434;constitutive=1;ensembl_phase=2;rank=5 scaffold_54 . repeat_region 78692 83640 . - . description=Gypsy-2-I_PI-int scaffold_54 . repeat_region 83650 83765 . - . description=Gypsy-1-LTR_PI scaffold_54 ensembl protein_coding_gene 79491 83596 . - . ID=Physo137435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540021;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 79491 83596 . - . ID=Physo137435;Parent=Physo137435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 79491 80414 . - 0 ID=Physo137435;Parent=Physo137435;rank=7 scaffold_54 . exon 79491 80414 . - . ID=Physo137435.7;Parent=Physo137435;constitutive=1;rank=7 scaffold_54 . CDS 80434 80972 . - 0 ID=Physo137435;Parent=Physo137435;rank=6 scaffold_54 . exon 80434 80972 . - . ID=Physo137435.6;Parent=Physo137435;constitutive=1;ensembl_phase=1;rank=6 scaffold_54 . CDS 81050 82227 . - 0 ID=Physo137435;Parent=Physo137435;rank=5 scaffold_54 . exon 81050 82227 . - . ID=Physo137435.5;Parent=Physo137435;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_54 . CDS 82432 82660 . - 0 ID=Physo137435;Parent=Physo137435;rank=4 scaffold_54 . exon 82432 82660 . - . ID=Physo137435.4;Parent=Physo137435;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_54 . CDS 82789 83175 . - 0 ID=Physo137435;Parent=Physo137435;rank=3 scaffold_54 . exon 82789 83175 . - . ID=Physo137435.3;Parent=Physo137435;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 83203 83330 . - 0 ID=Physo137435;Parent=Physo137435;rank=2 scaffold_54 . exon 83203 83330 . - . ID=Physo137435.2;Parent=Physo137435;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 83361 83596 . - 0 ID=Physo137435;Parent=Physo137435;rank=1 scaffold_54 . exon 83361 83596 . - . ID=Physo137435.1;Parent=Physo137435;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 84809 85923 . + . ID=Physo137436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540022;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 84809 85923 . + . ID=Physo137436;Parent=Physo137436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 84809 85451 . + 0 ID=Physo137436;Parent=Physo137436;rank=1 scaffold_54 . exon 84809 85451 . + . ID=Physo137436.1;Parent=Physo137436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 85533 85758 . + 0 ID=Physo137436;Parent=Physo137436;rank=2 scaffold_54 . exon 85533 85758 . + . ID=Physo137436.2;Parent=Physo137436;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_54 . CDS 85866 85923 . + 0 ID=Physo137436;Parent=Physo137436;rank=3 scaffold_54 . exon 85866 85923 . + . ID=Physo137436.3;Parent=Physo137436;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 ensembl protein_coding_gene 86123 87435 . - . ID=Physo157599;biotype=protein_coding;external_name=C_scaffold_54000001;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 86123 87435 . - . ID=Physo157599;Parent=Physo157599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 86123 86509 . - 0 ID=Physo157599;Parent=Physo157599;rank=3 scaffold_54 . exon 86123 86509 . - . ID=Physo157599.3;Parent=Physo157599;constitutive=1;rank=3 scaffold_54 . CDS 86578 86943 . - 0 ID=Physo157599;Parent=Physo157599;rank=2 scaffold_54 . exon 86578 86943 . - . ID=Physo157599.2;Parent=Physo157599;constitutive=1;rank=2 scaffold_54 . CDS 86974 87435 . - 0 ID=Physo157599;Parent=Physo157599;rank=1 scaffold_54 . exon 86974 87435 . - . ID=Physo157599.1;Parent=Physo157599;constitutive=1;rank=1 scaffold_54 . biological_region 95310 95312 0.999 + . logic_name=eponine scaffold_54 . repeat_region 96260 96277 . ? . description=dust scaffold_54 . biological_region 96261 96263 0.999 + . logic_name=eponine scaffold_54 . repeat_region 97179 97400 . ? . description=trf scaffold_54 . repeat_region 98207 98245 . ? . description=trf scaffold_54 ensembl protein_coding_gene 89527 89946 . - . ID=Physo137438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540024;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 89527 89946 . - . ID=Physo137438;Parent=Physo137438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 89527 89946 . - 0 ID=Physo137438;Parent=Physo137438;rank=1 scaffold_54 . exon 89527 89946 . - . ID=Physo137438.1;Parent=Physo137438;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 104315 108290 . + . ID=Physo137439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540025;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 104315 108290 . + . ID=Physo137439;Parent=Physo137439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 104315 104422 . + 0 ID=Physo137439;Parent=Physo137439;rank=1 scaffold_54 . exon 104315 104422 . + . ID=Physo137439.1;Parent=Physo137439;constitutive=1;rank=1 scaffold_54 . CDS 104474 104664 . + 0 ID=Physo137439;Parent=Physo137439;rank=2 scaffold_54 . exon 104474 104664 . + . ID=Physo137439.2;Parent=Physo137439;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 104756 105937 . + 0 ID=Physo137439;Parent=Physo137439;rank=3 scaffold_54 . exon 104756 105937 . + . ID=Physo137439.3;Parent=Physo137439;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_54 . CDS 105980 106510 . + 0 ID=Physo137439;Parent=Physo137439;rank=4 scaffold_54 . exon 105980 106510 . + . ID=Physo137439.4;Parent=Physo137439;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_54 . CDS 106624 106900 . + 0 ID=Physo137439;Parent=Physo137439;rank=5 scaffold_54 . exon 106624 106900 . + . ID=Physo137439.5;Parent=Physo137439;constitutive=1;ensembl_phase=2;rank=5 scaffold_54 . CDS 107106 108290 . + 0 ID=Physo137439;Parent=Physo137439;rank=6 scaffold_54 . exon 107106 108290 . + . ID=Physo137439.6;Parent=Physo137439;constitutive=1;rank=6 scaffold_54 . biological_region 109054 109056 0.999 + . logic_name=eponine scaffold_54 . repeat_region 113164 113171 . ? . description=dust scaffold_54 . repeat_region 113874 113897 . ? . description=trf scaffold_54 . repeat_region 114807 114855 . ? . description=trf scaffold_54 . biological_region 116037 116040 0.999 - . logic_name=eponine scaffold_54 . biological_region 118070 118073 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 115286 119211 . - . ID=Physo137440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540026;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 115286 119211 . - . ID=Physo137440;Parent=Physo137440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 115286 118055 . - 0 ID=Physo137440;Parent=Physo137440;rank=2 scaffold_54 . exon 115286 118055 . - . ID=Physo137440.2;Parent=Physo137440;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 118124 119211 . - 0 ID=Physo137440;Parent=Physo137440;rank=1 scaffold_54 . exon 118124 119211 . - . ID=Physo137440.1;Parent=Physo137440;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . repeat_region 126678 127523 . - . description=Sola3-1_PS scaffold_54 . repeat_region 127600 128415 . - . description=Sola3-1_PS scaffold_54 . repeat_region 128712 128838 . ? . description=trf scaffold_54 . biological_region 130206 130206 0.999 + . logic_name=eponine scaffold_54 . biological_region 132452 132456 0.999 + . logic_name=eponine scaffold_54 . repeat_region 132479 132540 . ? . description=trf scaffold_54 . biological_region 132492 132498 0.999 + . logic_name=eponine scaffold_54 . biological_region 132499 132501 0.999 - . logic_name=eponine scaffold_54 . biological_region 132620 132624 0.999 - . logic_name=eponine scaffold_54 . biological_region 132643 132648 0.999 + . logic_name=eponine scaffold_54 . repeat_region 132651 132752 . ? . description=trf scaffold_54 . repeat_region 132651 132753 . ? . description=trf scaffold_54 . biological_region 132679 132682 0.999 + . logic_name=eponine scaffold_54 . biological_region 132729 132736 0.999 - . logic_name=eponine scaffold_54 . biological_region 133050 133054 0.999 - . logic_name=eponine scaffold_54 . repeat_region 133260 133271 . ? . description=dust scaffold_54 . biological_region 134138 134143 0.999 - . logic_name=eponine scaffold_54 . biological_region 134226 134229 0.999 + . logic_name=eponine scaffold_54 . repeat_region 135625 135647 . ? . description=trf scaffold_54 . repeat_region 136560 136567 . ? . description=dust scaffold_54 . repeat_region 137154 137200 . ? . description=trf scaffold_54 . repeat_region 137215 137333 . ? . description=trf scaffold_54 . biological_region 137577 137580 0.999 + . logic_name=eponine scaffold_54 . biological_region 137713 137716 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 129435 130702 . - . ID=Physo118578;biotype=protein_coding;external_name=estExt_Genewise1.C_540109;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 129435 130702 . - . ID=Physo118578;Parent=Physo118578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 129435 129931 . - 0 ID=Physo118578;Parent=Physo118578;rank=2 scaffold_54 . exon 129435 129931 . - . ID=Physo118578.2;Parent=Physo118578;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 130271 130424 . - 0 ID=Physo118578;Parent=Physo118578;rank=1 scaffold_54 . exon 130271 130702 . - . ID=Physo118578.1;Parent=Physo118578;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_54 ensembl protein_coding_gene 137967 139222 . + . ID=Physo137441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540027;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 137967 139222 . + . ID=Physo137441;Parent=Physo137441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 137967 138452 . + 0 ID=Physo137441;Parent=Physo137441;rank=1 scaffold_54 . exon 137967 138452 . + . ID=Physo137441.1;Parent=Physo137441;constitutive=1;rank=1 scaffold_54 . CDS 138539 139222 . + 0 ID=Physo137441;Parent=Physo137441;rank=2 scaffold_54 . exon 138539 139222 . + . ID=Physo137441.2;Parent=Physo137441;constitutive=1;rank=2 scaffold_54 ensembl protein_coding_gene 143916 148300 . + . ID=Physo157600;biotype=protein_coding;external_name=C_scaffold_54000002;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 143916 148300 . + . ID=Physo157600;Parent=Physo157600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 143916 144010 . + 0 ID=Physo157600;Parent=Physo157600;rank=1 scaffold_54 . exon 143916 144010 . + . ID=Physo157600.1;Parent=Physo157600;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 144177 144573 . + 0 ID=Physo157600;Parent=Physo157600;rank=2 scaffold_54 . exon 144177 144573 . + . ID=Physo157600.2;Parent=Physo157600;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 144625 144723 . + 0 ID=Physo157600;Parent=Physo157600;rank=3 scaffold_54 . exon 144625 144723 . + . ID=Physo157600.3;Parent=Physo157600;constitutive=1;rank=3 scaffold_54 . CDS 144878 144917 . + 0 ID=Physo157600;Parent=Physo157600;rank=4 scaffold_54 . exon 144878 144917 . + . ID=Physo157600.4;Parent=Physo157600;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_54 . CDS 144968 145786 . + 0 ID=Physo157600;Parent=Physo157600;rank=5 scaffold_54 . exon 144968 145786 . + . ID=Physo157600.5;Parent=Physo157600;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_54 . CDS 145820 146211 . + 0 ID=Physo157600;Parent=Physo157600;rank=6 scaffold_54 . exon 145820 146211 . + . ID=Physo157600.6;Parent=Physo157600;constitutive=1;ensembl_phase=1;rank=6 scaffold_54 . CDS 146271 146639 . + 0 ID=Physo157600;Parent=Physo157600;rank=7 scaffold_54 . exon 146271 146639 . + . ID=Physo157600.7;Parent=Physo157600;constitutive=1;rank=7 scaffold_54 . CDS 146694 147384 . + 0 ID=Physo157600;Parent=Physo157600;rank=8 scaffold_54 . exon 146694 147384 . + . ID=Physo157600.8;Parent=Physo157600;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_54 . CDS 147615 147673 . + 0 ID=Physo157600;Parent=Physo157600;rank=9 scaffold_54 . exon 147615 147673 . + . ID=Physo157600.9;Parent=Physo157600;constitutive=1;ensembl_phase=1;rank=9 scaffold_54 . CDS 147752 148050 . + 0 ID=Physo157600;Parent=Physo157600;rank=10 scaffold_54 . exon 147752 148050 . + . ID=Physo157600.10;Parent=Physo157600;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_54 . CDS 148120 148300 . + 0 ID=Physo157600;Parent=Physo157600;rank=11 scaffold_54 . exon 148120 148300 . + . ID=Physo157600.11;Parent=Physo157600;constitutive=1;ensembl_phase=2;rank=11 scaffold_54 . biological_region 150627 150633 0.999 + . logic_name=eponine scaffold_54 . biological_region 150654 150657 0.999 + . logic_name=eponine scaffold_54 . biological_region 150677 150679 0.999 + . logic_name=eponine scaffold_54 . biological_region 150719 150721 0.999 - . logic_name=eponine scaffold_54 . biological_region 150770 150777 0.999 + . logic_name=eponine scaffold_54 . biological_region 150795 150802 0.999 + . logic_name=eponine scaffold_54 . biological_region 150803 150808 0.999 - . logic_name=eponine scaffold_54 . biological_region 150859 150861 0.999 - . logic_name=eponine scaffold_54 . repeat_region 150918 151107 . ? . description=dust scaffold_54 . biological_region 151162 151170 0.999 + . logic_name=eponine scaffold_54 . biological_region 151181 151192 0.999 + . logic_name=eponine scaffold_54 . biological_region 151186 151194 0.999 - . logic_name=eponine scaffold_54 . biological_region 151201 151207 0.999 + . logic_name=eponine scaffold_54 . biological_region 151211 151223 0.999 + . logic_name=eponine scaffold_54 . repeat_region 151227 151283 . ? . description=trf scaffold_54 . biological_region 151240 151245 0.999 + . logic_name=eponine scaffold_54 . biological_region 151248 151253 0.999 - . logic_name=eponine scaffold_54 . biological_region 151262 151266 0.999 - . logic_name=eponine scaffold_54 . biological_region 151268 151280 0.999 + . logic_name=eponine scaffold_54 . biological_region 151271 151293 0.999 - . logic_name=eponine scaffold_54 . biological_region 151286 151294 0.999 + . logic_name=eponine scaffold_54 . biological_region 151298 151300 0.999 - . logic_name=eponine scaffold_54 . biological_region 151300 151309 0.999 + . logic_name=eponine scaffold_54 . biological_region 151316 151317 0.999 - . logic_name=eponine scaffold_54 . repeat_region 151347 151385 . ? . description=trf scaffold_54 . biological_region 151348 151354 0.999 - . logic_name=eponine scaffold_54 . biological_region 151378 151378 0.999 - . logic_name=eponine scaffold_54 . biological_region 151403 151405 0.999 - . logic_name=eponine scaffold_54 . biological_region 151465 151471 0.999 - . logic_name=eponine scaffold_54 . biological_region 151577 151579 0.999 - . logic_name=eponine scaffold_54 . biological_region 151894 151901 0.999 + . logic_name=eponine scaffold_54 . biological_region 152015 152019 0.999 - . logic_name=eponine scaffold_54 . biological_region 156880 156885 0.999 + . logic_name=eponine scaffold_54 . repeat_region 157058 157119 . ? . description=dust scaffold_54 . repeat_region 157226 157247 . ? . description=trf scaffold_54 ensembl protein_coding_gene 151802 153484 . + . ID=Physo109031;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540005;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 151802 153484 . + . ID=Physo109031;Parent=Physo109031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 151802 153484 . + 0 ID=Physo109031;Parent=Physo109031;rank=1 scaffold_54 . exon 151802 153484 . + . ID=Physo109031.1;Parent=Physo109031;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 149003 151622 . - . ID=Physo137443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540029;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 149003 151622 . - . ID=Physo137443;Parent=Physo137443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 149003 149089 . - 0 ID=Physo137443;Parent=Physo137443;rank=4 scaffold_54 . exon 149003 149089 . - . ID=Physo137443.4;Parent=Physo137443;constitutive=1;rank=4 scaffold_54 . CDS 149172 149249 . - 0 ID=Physo137443;Parent=Physo137443;rank=3 scaffold_54 . exon 149172 149249 . - . ID=Physo137443.3;Parent=Physo137443;constitutive=1;rank=3 scaffold_54 . CDS 149335 149457 . - 0 ID=Physo137443;Parent=Physo137443;rank=2 scaffold_54 . exon 149335 149457 . - . ID=Physo137443.2;Parent=Physo137443;constitutive=1;rank=2 scaffold_54 . CDS 149532 151622 . - 0 ID=Physo137443;Parent=Physo137443;rank=1 scaffold_54 . exon 149532 151622 . - . ID=Physo137443.1;Parent=Physo137443;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 153589 156943 . - . ID=Physo137445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540031;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 153589 156943 . - . ID=Physo137445;Parent=Physo137445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 153589 153856 . - 0 ID=Physo137445;Parent=Physo137445;rank=8 scaffold_54 . exon 153589 153856 . - . ID=Physo137445.8;Parent=Physo137445;constitutive=1;ensembl_phase=2;rank=8 scaffold_54 . CDS 153920 154080 . - 0 ID=Physo137445;Parent=Physo137445;rank=7 scaffold_54 . exon 153920 154080 . - . ID=Physo137445.7;Parent=Physo137445;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_54 . CDS 154149 154261 . - 0 ID=Physo137445;Parent=Physo137445;rank=6 scaffold_54 . exon 154149 154261 . - . ID=Physo137445.6;Parent=Physo137445;constitutive=1;ensembl_phase=1;rank=6 scaffold_54 . CDS 154328 154538 . - 0 ID=Physo137445;Parent=Physo137445;rank=5 scaffold_54 . exon 154328 154538 . - . ID=Physo137445.5;Parent=Physo137445;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_54 . CDS 154627 154815 . - 0 ID=Physo137445;Parent=Physo137445;rank=4 scaffold_54 . exon 154627 154815 . - . ID=Physo137445.4;Parent=Physo137445;constitutive=1;rank=4 scaffold_54 . CDS 154972 155004 . - 0 ID=Physo137445;Parent=Physo137445;rank=3 scaffold_54 . exon 154972 155004 . - . ID=Physo137445.3;Parent=Physo137445;constitutive=1;rank=3 scaffold_54 . CDS 155228 155543 . - 0 ID=Physo137445;Parent=Physo137445;rank=2 scaffold_54 . exon 155228 155543 . - . ID=Physo137445.2;Parent=Physo137445;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 155619 156943 . - 0 ID=Physo137445;Parent=Physo137445;rank=1 scaffold_54 . exon 155619 156943 . - . ID=Physo137445.1;Parent=Physo137445;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 157836 159617 . - . ID=Physo137446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540032;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 157836 159617 . - . ID=Physo137446;Parent=Physo137446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 157836 159302 . - 0 ID=Physo137446;Parent=Physo137446;rank=2 scaffold_54 . exon 157836 159302 . - . ID=Physo137446.2;Parent=Physo137446;constitutive=1;rank=2 scaffold_54 . CDS 159339 159617 . - 0 ID=Physo137446;Parent=Physo137446;rank=1 scaffold_54 . exon 159339 159617 . - . ID=Physo137446.1;Parent=Physo137446;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 163609 164353 . - . ID=Physo137447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540033;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 163609 164353 . - . ID=Physo137447;Parent=Physo137447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 163609 163617 . - 0 ID=Physo137447;Parent=Physo137447;rank=2 scaffold_54 . exon 163609 163617 . - . ID=Physo137447.2;Parent=Physo137447;constitutive=1;rank=2 scaffold_54 . CDS 163643 164353 . - 0 ID=Physo137447;Parent=Physo137447;rank=1 scaffold_54 . exon 163643 164353 . - . ID=Physo137447.1;Parent=Physo137447;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 164554 167085 . + . ID=Physo137448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540034;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 164554 167085 . + . ID=Physo137448;Parent=Physo137448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 164554 167085 . + 0 ID=Physo137448;Parent=Physo137448;rank=1 scaffold_54 . exon 164554 167085 . + . ID=Physo137448.1;Parent=Physo137448;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 167967 170611 . + . ID=Physo137449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540035;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 167967 170611 . + . ID=Physo137449;Parent=Physo137449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 167967 170519 . + 0 ID=Physo137449;Parent=Physo137449;rank=1 scaffold_54 . exon 167967 170519 . + . ID=Physo137449.1;Parent=Physo137449;constitutive=1;rank=1 scaffold_54 . CDS 170564 170611 . + 0 ID=Physo137449;Parent=Physo137449;rank=2 scaffold_54 . biological_region 168106 168107 0.999 - . logic_name=eponine scaffold_54 . biological_region 168189 168190 0.999 + . logic_name=eponine scaffold_54 . biological_region 168206 168210 0.999 - . logic_name=eponine scaffold_54 . biological_region 168310 168314 0.999 + . logic_name=eponine scaffold_54 . biological_region 168325 168328 0.999 - . logic_name=eponine scaffold_54 . biological_region 168379 168383 0.999 + . logic_name=eponine scaffold_54 . biological_region 168389 168393 0.999 - . logic_name=eponine scaffold_54 . biological_region 168435 168439 0.999 - . logic_name=eponine scaffold_54 . biological_region 168613 168616 0.999 - . logic_name=eponine scaffold_54 . biological_region 168657 168661 0.999 - . logic_name=eponine scaffold_54 . biological_region 168888 168891 0.999 - . logic_name=eponine scaffold_54 . repeat_region 170189 170228 . ? . description=trf scaffold_54 . biological_region 170710 170715 0.999 + . logic_name=eponine scaffold_54 . biological_region 170717 170724 0.999 - . logic_name=eponine scaffold_54 . biological_region 173525 173529 0.999 + . logic_name=eponine scaffold_54 . biological_region 173753 173759 0.999 + . logic_name=eponine scaffold_54 . biological_region 173986 173990 0.999 - . logic_name=eponine scaffold_54 . exon 170564 170611 . + . ID=Physo137449.2;Parent=Physo137449;constitutive=1;rank=2 scaffold_54 ensembl protein_coding_gene 170960 172519 . - . ID=Physo137450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540036;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 170960 172519 . - . ID=Physo137450;Parent=Physo137450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 170960 171091 . - 0 ID=Physo137450;Parent=Physo137450;rank=8 scaffold_54 . exon 170960 171091 . - . ID=Physo137450.8;Parent=Physo137450;constitutive=1;rank=8 scaffold_54 . CDS 171163 171288 . - 0 ID=Physo137450;Parent=Physo137450;rank=7 scaffold_54 . exon 171163 171288 . - . ID=Physo137450.7;Parent=Physo137450;constitutive=1;rank=7 scaffold_54 . CDS 171359 171562 . - 0 ID=Physo137450;Parent=Physo137450;rank=6 scaffold_54 . exon 171359 171562 . - . ID=Physo137450.6;Parent=Physo137450;constitutive=1;rank=6 scaffold_54 . CDS 171672 171842 . - 0 ID=Physo137450;Parent=Physo137450;rank=5 scaffold_54 . exon 171672 171842 . - . ID=Physo137450.5;Parent=Physo137450;constitutive=1;rank=5 scaffold_54 . CDS 171912 171994 . - 0 ID=Physo137450;Parent=Physo137450;rank=4 scaffold_54 . exon 171912 171994 . - . ID=Physo137450.4;Parent=Physo137450;constitutive=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 172127 172169 . - 0 ID=Physo137450;Parent=Physo137450;rank=3 scaffold_54 . exon 172127 172169 . - . ID=Physo137450.3;Parent=Physo137450;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_54 . CDS 172253 172328 . - 0 ID=Physo137450;Parent=Physo137450;rank=2 scaffold_54 . exon 172253 172328 . - . ID=Physo137450.2;Parent=Physo137450;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 172422 172519 . - 0 ID=Physo137450;Parent=Physo137450;rank=1 scaffold_54 . exon 172422 172519 . - . ID=Physo137450.1;Parent=Physo137450;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . repeat_region 178334 178351 . ? . description=dust scaffold_54 . repeat_region 179728 179737 . ? . description=dust scaffold_54 . repeat_region 181513 181520 . ? . description=dust scaffold_54 . repeat_region 184521 184528 . ? . description=dust scaffold_54 ensembl protein_coding_gene 185793 186305 . + . ID=Physo137451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540037;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 185793 186305 . + . ID=Physo137451;Parent=Physo137451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 185793 186305 . + 0 ID=Physo137451;Parent=Physo137451;rank=1 scaffold_54 . exon 185793 186305 . + . ID=Physo137451.1;Parent=Physo137451;constitutive=1;rank=1 scaffold_54 . biological_region 188060 188064 0.999 + . logic_name=eponine scaffold_54 . biological_region 188154 188158 0.999 - . logic_name=eponine scaffold_54 . biological_region 188176 188178 0.999 + . logic_name=eponine scaffold_54 . repeat_region 189068 189181 . ? . description=trf scaffold_54 . repeat_region 189296 191325 . - . description=GypsyPi-1c_I-int scaffold_54 . biological_region 189796 189801 0.999 + . logic_name=eponine scaffold_54 . repeat_region 189860 189880 . ? . description=trf scaffold_54 . biological_region 191104 191107 0.999 - . logic_name=eponine scaffold_54 . biological_region 191671 191672 0.999 - . logic_name=eponine scaffold_54 . biological_region 191922 191927 0.999 - . logic_name=eponine scaffold_54 . biological_region 191994 191994 0.999 - . logic_name=eponine scaffold_54 . biological_region 195030 195030 0.999 - . logic_name=eponine scaffold_54 . biological_region 195056 195058 0.999 - . logic_name=eponine scaffold_54 . biological_region 195107 195110 0.999 - . logic_name=eponine scaffold_54 . biological_region 195109 195114 0.999 + . logic_name=eponine scaffold_54 . biological_region 195616 195617 0.999 + . logic_name=eponine scaffold_54 . biological_region 196191 196196 0.999 + . logic_name=eponine scaffold_54 . biological_region 196242 196246 0.999 + . logic_name=eponine scaffold_54 . biological_region 196289 196292 0.999 - . logic_name=eponine scaffold_54 . biological_region 196319 196325 0.999 - . logic_name=eponine scaffold_54 . biological_region 196771 196772 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 190095 190991 . - . ID=Physo109032;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540006;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 190095 190991 . - . ID=Physo109032;Parent=Physo109032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 190095 190991 . - 0 ID=Physo109032;Parent=Physo109032;rank=1 scaffold_54 . exon 190095 190991 . - . ID=Physo109032.1;Parent=Physo109032;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 191145 192038 . - . ID=Physo137453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540039;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 191145 192038 . - . ID=Physo137453;Parent=Physo137453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 191145 191911 . - 0 ID=Physo137453;Parent=Physo137453;rank=2 scaffold_54 . exon 191145 191911 . - . ID=Physo137453.2;Parent=Physo137453;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 192008 192038 . - 0 ID=Physo137453;Parent=Physo137453;rank=1 scaffold_54 . exon 192008 192038 . - . ID=Physo137453.1;Parent=Physo137453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 ensembl protein_coding_gene 201941 206845 . + . ID=Physo137454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540040;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 201941 206845 . + . ID=Physo137454;Parent=Physo137454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 201941 203188 . + 0 ID=Physo137454;Parent=Physo137454;rank=1 scaffold_54 . exon 201941 203188 . + . ID=Physo137454.1;Parent=Physo137454;constitutive=1;rank=1 scaffold_54 . CDS 203249 206638 . + 0 ID=Physo137454;Parent=Physo137454;rank=2 scaffold_54 . exon 203249 206638 . + . ID=Physo137454.2;Parent=Physo137454;constitutive=1;rank=2 scaffold_54 . CDS 206711 206845 . + 0 ID=Physo137454;Parent=Physo137454;rank=3 scaffold_54 . exon 206711 206845 . + . ID=Physo137454.3;Parent=Physo137454;constitutive=1;rank=3 scaffold_54 . repeat_region 211964 211973 . ? . description=dust scaffold_54 . repeat_region 213669 213811 . ? . description=trf scaffold_54 . repeat_region 213671 213811 . ? . description=trf scaffold_54 . repeat_region 213671 213813 . ? . description=trf scaffold_54 ensembl protein_coding_gene 213417 214565 . + . ID=Physo137455;biotype=protein_coding;description=PsAvh244 [Source:UniProtKB/TrEMBL%3BAcc:E0W598];external_name=estExt_fgenesh1_pg.C_540041;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 213417 214565 . + . ID=Physo137455;Parent=Physo137455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 213417 214565 . + 0 ID=Physo137455;Parent=Physo137455;rank=1 scaffold_54 . exon 213417 214565 . + . ID=Physo137455.1;Parent=Physo137455;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 215585 217750 . + . ID=Physo137456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540042;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 215585 217750 . + . ID=Physo137456;Parent=Physo137456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 215585 217750 . + 0 ID=Physo137456;Parent=Physo137456;rank=1 scaffold_54 . exon 215585 217750 . + . ID=Physo137456.1;Parent=Physo137456;constitutive=1;rank=1 scaffold_54 . biological_region 218279 218279 0.999 - . logic_name=eponine scaffold_54 . biological_region 223137 223140 0.999 + . logic_name=eponine scaffold_54 . biological_region 223626 223630 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 217807 219072 . + . ID=Physo118588;biotype=protein_coding;external_name=estExt_Genewise1.C_540119;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 217807 219072 . + . ID=Physo118588;Parent=Physo118588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 217807 218396 . + . ID=Physo118588.1;Parent=Physo118588;constitutive=1;ensembl_phase=-1;rank=1 scaffold_54 . CDS 217905 218396 . + 0 ID=Physo118588;Parent=Physo118588;rank=1 scaffold_54 . CDS 218635 219072 . + 0 ID=Physo118588;Parent=Physo118588;rank=2 scaffold_54 . exon 218635 219072 . + . ID=Physo118588.2;Parent=Physo118588;constitutive=1;rank=2 scaffold_54 ensembl protein_coding_gene 221379 223652 . - . ID=Physo137459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540045;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 221379 223652 . - . ID=Physo137459;Parent=Physo137459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 221379 223652 . - 0 ID=Physo137459;Parent=Physo137459;rank=1 scaffold_54 . exon 221379 223652 . - . ID=Physo137459.1;Parent=Physo137459;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 224284 226763 . + . ID=Physo137460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540046;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 224284 226763 . + . ID=Physo137460;Parent=Physo137460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 224284 224985 . + 0 ID=Physo137460;Parent=Physo137460;rank=1 scaffold_54 . exon 224284 224985 . + . ID=Physo137460.1;Parent=Physo137460;constitutive=1;rank=1 scaffold_54 . CDS 225049 225311 . + 0 ID=Physo137460;Parent=Physo137460;rank=2 scaffold_54 . exon 225049 225311 . + . ID=Physo137460.2;Parent=Physo137460;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 225413 225520 . + 0 ID=Physo137460;Parent=Physo137460;rank=3 scaffold_54 . exon 225413 225520 . + . ID=Physo137460.3;Parent=Physo137460;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_54 . CDS 225610 226108 . + 0 ID=Physo137460;Parent=Physo137460;rank=4 scaffold_54 . exon 225610 226108 . + . ID=Physo137460.4;Parent=Physo137460;constitutive=1;ensembl_phase=2;rank=4 scaffold_54 . CDS 226223 226535 . + 0 ID=Physo137460;Parent=Physo137460;rank=5 scaffold_54 . exon 226223 226535 . + . ID=Physo137460.5;Parent=Physo137460;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_54 . CDS 226756 226763 . + 0 ID=Physo137460;Parent=Physo137460;rank=6 scaffold_54 . exon 226756 226763 . + . ID=Physo137460.6;Parent=Physo137460;constitutive=1;ensembl_phase=1;rank=6 scaffold_54 ensembl protein_coding_gene 227119 227466 . - . ID=Physo137461;biotype=protein_coding;description=PsAvh217 [Source:UniProtKB/TrEMBL%3BAcc:E0W599];external_name=estExt_fgenesh1_pg.C_540047;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 227119 227466 . - . ID=Physo137461;Parent=Physo137461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 227119 227466 . - 0 ID=Physo137461;Parent=Physo137461;rank=1 scaffold_54 . exon 227119 227466 . - . ID=Physo137461.1;Parent=Physo137461;constitutive=1;rank=1 scaffold_54 . repeat_region 230732 230804 . ? . description=trf scaffold_54 . repeat_region 232817 232868 . ? . description=trf scaffold_54 . repeat_region 233762 233770 . ? . description=dust scaffold_54 . repeat_region 234453 234467 . ? . description=dust scaffold_54 . repeat_region 236711 236795 . ? . description=trf scaffold_54 . repeat_region 236777 236857 . ? . description=trf scaffold_54 ensembl protein_coding_gene 234554 236980 . - . ID=Physo137462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540048;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 234554 236980 . - . ID=Physo137462;Parent=Physo137462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 234554 234678 . - 0 ID=Physo137462;Parent=Physo137462;rank=6 scaffold_54 . exon 234554 234678 . - . ID=Physo137462.6;Parent=Physo137462;constitutive=1;ensembl_phase=1;rank=6 scaffold_54 . CDS 234729 235041 . - 0 ID=Physo137462;Parent=Physo137462;rank=5 scaffold_54 . exon 234729 235041 . - . ID=Physo137462.5;Parent=Physo137462;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_54 . CDS 235156 235654 . - 0 ID=Physo137462;Parent=Physo137462;rank=4 scaffold_54 . exon 235156 235654 . - . ID=Physo137462.4;Parent=Physo137462;constitutive=1;ensembl_phase=2;rank=4 scaffold_54 . CDS 235744 235851 . - 0 ID=Physo137462;Parent=Physo137462;rank=3 scaffold_54 . exon 235744 235851 . - . ID=Physo137462.3;Parent=Physo137462;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_54 . CDS 235953 236215 . - 0 ID=Physo137462;Parent=Physo137462;rank=2 scaffold_54 . exon 235953 236215 . - . ID=Physo137462.2;Parent=Physo137462;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 236279 236980 . - 0 ID=Physo137462;Parent=Physo137462;rank=1 scaffold_54 . exon 236279 236980 . - . ID=Physo137462.1;Parent=Physo137462;constitutive=1;rank=1 scaffold_54 . biological_region 240251 240251 0.999 + . logic_name=eponine scaffold_54 . biological_region 241481 241485 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 239206 243029 . - . ID=Physo137463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540049;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 239206 243029 . - . ID=Physo137463;Parent=Physo137463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 239206 239575 . - 0 ID=Physo137463;Parent=Physo137463;rank=4 scaffold_54 . exon 239206 239575 . - . ID=Physo137463.4;Parent=Physo137463;constitutive=1;ensembl_phase=2;rank=4 scaffold_54 . CDS 239747 240865 . - 0 ID=Physo137463;Parent=Physo137463;rank=3 scaffold_54 . exon 239747 240865 . - . ID=Physo137463.3;Parent=Physo137463;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_54 . CDS 241001 242510 . - 0 ID=Physo137463;Parent=Physo137463;rank=2 scaffold_54 . exon 241001 242510 . - . ID=Physo137463.2;Parent=Physo137463;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_54 . CDS 242570 243029 . - 0 ID=Physo137463;Parent=Physo137463;rank=1 scaffold_54 . exon 242570 243029 . - . ID=Physo137463.1;Parent=Physo137463;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 ensembl protein_coding_gene 244420 252829 . - . ID=Physo157603;biotype=protein_coding;external_name=C_scaffold_54000005;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 244420 252829 . - . ID=Physo157603;Parent=Physo157603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 244420 244682 . - 0 ID=Physo157603;Parent=Physo157603;rank=15 scaffold_54 . exon 244420 244682 . - . ID=Physo157603.15;Parent=Physo157603;constitutive=1;ensembl_phase=1;rank=15 scaffold_54 . CDS 244713 245090 . - 0 ID=Physo157603;Parent=Physo157603;rank=14 scaffold_54 . exon 244713 245090 . - . ID=Physo157603.14;Parent=Physo157603;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_54 . CDS 245169 245493 . - 0 ID=Physo157603;Parent=Physo157603;rank=13 scaffold_54 . exon 245169 245493 . - . ID=Physo157603.13;Parent=Physo157603;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_54 . CDS 245569 247106 . - 0 ID=Physo157603;Parent=Physo157603;rank=12 scaffold_54 . exon 245569 247106 . - . ID=Physo157603.12;Parent=Physo157603;constitutive=1;ensembl_phase=1;rank=12 scaffold_54 . CDS 247134 247816 . - 0 ID=Physo157603;Parent=Physo157603;rank=11 scaffold_54 . CDS 247844 248009 . - 0 ID=Physo157603;Parent=Physo157603;rank=10 scaffold_54 . CDS 248087 248234 . - 0 ID=Physo157603;Parent=Physo157603;rank=9 scaffold_54 . CDS 248349 249473 . - 0 ID=Physo157603;Parent=Physo157603;rank=8 scaffold_54 . CDS 249498 249642 . - 0 ID=Physo157603;Parent=Physo157603;rank=7 scaffold_54 . CDS 249887 250602 . - 0 ID=Physo157603;Parent=Physo157603;rank=6 scaffold_54 . CDS 250759 251159 . - 0 ID=Physo157603;Parent=Physo157603;rank=5 scaffold_54 . CDS 251433 251730 . - 0 ID=Physo157603;Parent=Physo157603;rank=4 scaffold_54 . CDS 251800 251824 . - 0 ID=Physo157603;Parent=Physo157603;rank=3 scaffold_54 . CDS 251904 252325 . - 0 ID=Physo157603;Parent=Physo157603;rank=2 scaffold_54 . CDS 252350 252829 . - 0 ID=Physo157603;Parent=Physo157603;rank=1 scaffold_54 ensembl protein_coding_gene 254615 256573 . - . ID=Physo109034;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540008;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 254615 256573 . - . ID=Physo109034;Parent=Physo109034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 254615 255020 . - . ID=Physo109034.7;Parent=Physo109034;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_54 . CDS 254732 255020 . - 0 ID=Physo109034;Parent=Physo109034;rank=7 scaffold_54 . CDS 255102 255354 . - 0 ID=Physo109034;Parent=Physo109034;rank=6 scaffold_54 . exon 255102 255354 . - . ID=Physo109034.6;Parent=Physo109034;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_54 . CDS 255418 255619 . - 0 ID=Physo109034;Parent=Physo109034;rank=5 scaffold_54 . exon 255418 255619 . - . ID=Physo109034.5;Parent=Physo109034;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_54 . CDS 255685 256046 . - 0 ID=Physo109034;Parent=Physo109034;rank=4 scaffold_54 . exon 255685 256046 . - . ID=Physo109034.4;Parent=Physo109034;constitutive=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 256130 256247 . - 0 ID=Physo109034;Parent=Physo109034;rank=3 scaffold_54 . exon 256130 256247 . - . ID=Physo109034.3;Parent=Physo109034;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_54 . CDS 256344 256456 . - 0 ID=Physo109034;Parent=Physo109034;rank=2 scaffold_54 . exon 256344 256456 . - . ID=Physo109034.2;Parent=Physo109034;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 256501 256573 . - 0 ID=Physo109034;Parent=Physo109034;rank=1 scaffold_54 . exon 256501 256573 . - . ID=Physo109034.1;Parent=Physo109034;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . exon 247134 247816 . - . ID=Physo157603.11;Parent=Physo157603;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_54 . exon 247844 248009 . - . ID=Physo157603.10;Parent=Physo157603;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_54 . exon 248087 248234 . - . ID=Physo157603.9;Parent=Physo157603;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_54 . exon 248349 249473 . - . ID=Physo157603.8;Parent=Physo157603;constitutive=1;rank=8 scaffold_54 . exon 249498 249642 . - . ID=Physo157603.7;Parent=Physo157603;constitutive=1;ensembl_phase=2;rank=7 scaffold_54 . exon 249887 250602 . - . ID=Physo157603.6;Parent=Physo157603;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_54 . exon 250759 251159 . - . ID=Physo157603.5;Parent=Physo157603;constitutive=1;ensembl_phase=1;rank=5 scaffold_54 . exon 251433 251730 . - . ID=Physo157603.4;Parent=Physo157603;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_54 . exon 251800 251824 . - . ID=Physo157603.3;Parent=Physo157603;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 . exon 251904 252325 . - . ID=Physo157603.2;Parent=Physo157603;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . exon 252350 252829 . - . ID=Physo157603.1;Parent=Physo157603;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 252949 254600 . + . ID=Physo157604;biotype=protein_coding;external_name=C_scaffold_54000006;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 252949 254600 . + . ID=Physo157604;Parent=Physo157604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 252949 253030 . + 0 ID=Physo157604;Parent=Physo157604;rank=1 scaffold_54 . exon 252949 253030 . + . ID=Physo157604.1;Parent=Physo157604;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 253101 253189 . + 0 ID=Physo157604;Parent=Physo157604;rank=2 scaffold_54 . exon 253101 253189 . + . ID=Physo157604.2;Parent=Physo157604;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 253271 253337 . + 0 ID=Physo157604;Parent=Physo157604;rank=3 scaffold_54 . exon 253271 253337 . + . ID=Physo157604.3;Parent=Physo157604;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_54 . CDS 253412 253507 . + 0 ID=Physo157604;Parent=Physo157604;rank=4 scaffold_54 . exon 253412 253507 . + . ID=Physo157604.4;Parent=Physo157604;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 253581 253613 . + 0 ID=Physo157604;Parent=Physo157604;rank=5 scaffold_54 . exon 253581 253613 . + . ID=Physo157604.5;Parent=Physo157604;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_54 . CDS 253745 253792 . + 0 ID=Physo157604;Parent=Physo157604;rank=6 scaffold_54 . exon 253745 253792 . + . ID=Physo157604.6;Parent=Physo157604;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_54 . CDS 253875 254427 . + 0 ID=Physo157604;Parent=Physo157604;rank=7 scaffold_54 . exon 253875 254427 . + . ID=Physo157604.7;Parent=Physo157604;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_54 . CDS 254492 254600 . + 0 ID=Physo157604;Parent=Physo157604;rank=8 scaffold_54 . exon 254492 254600 . + . ID=Physo157604.8;Parent=Physo157604;constitutive=1;ensembl_phase=2;rank=8 scaffold_54 . repeat_region 260566 260573 . ? . description=dust scaffold_54 . biological_region 260795 260796 0.999 + . logic_name=eponine scaffold_54 . biological_region 261097 261098 0.999 - . logic_name=eponine scaffold_54 . biological_region 261956 261959 0.999 - . logic_name=eponine scaffold_54 . biological_region 262690 262691 0.999 + . logic_name=eponine scaffold_54 . biological_region 263348 263352 0.999 - . logic_name=eponine scaffold_54 . repeat_region 264429 264518 . - . description=Sola3-1_PS scaffold_54 ensembl protein_coding_gene 260646 262143 . + . ID=Physo137467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540053;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 260646 262143 . + . ID=Physo137467;Parent=Physo137467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 260646 260656 . + 0 ID=Physo137467;Parent=Physo137467;rank=1 scaffold_54 . exon 260646 260656 . + . ID=Physo137467.1;Parent=Physo137467;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 260708 260724 . + 0 ID=Physo137467;Parent=Physo137467;rank=2 scaffold_54 . exon 260708 260724 . + . ID=Physo137467.2;Parent=Physo137467;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 260783 262143 . + 0 ID=Physo137467;Parent=Physo137467;rank=3 scaffold_54 . exon 260783 262143 . + . ID=Physo137467.3;Parent=Physo137467;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . repeat_region 268069 268168 . ? . description=trf scaffold_54 . repeat_region 268089 268179 . ? . description=trf scaffold_54 . repeat_region 270412 270486 . ? . description=trf scaffold_54 . repeat_region 270413 270486 . ? . description=trf scaffold_54 . repeat_region 271559 271582 . ? . description=trf scaffold_54 ensembl protein_coding_gene 270294 271629 . + . ID=Physo137468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540054;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 270294 271629 . + . ID=Physo137468;Parent=Physo137468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 270294 270662 . + 0 ID=Physo137468;Parent=Physo137468;rank=1 scaffold_54 . exon 270294 270662 . + . ID=Physo137468.1;Parent=Physo137468;constitutive=1;rank=1 scaffold_54 . CDS 270744 270851 . + 0 ID=Physo137468;Parent=Physo137468;rank=2 scaffold_54 . exon 270744 270851 . + . ID=Physo137468.2;Parent=Physo137468;constitutive=1;rank=2 scaffold_54 . CDS 270907 271629 . + 0 ID=Physo137468;Parent=Physo137468;rank=3 scaffold_54 . exon 270907 271629 . + . ID=Physo137468.3;Parent=Physo137468;constitutive=1;rank=3 scaffold_54 . repeat_region 278975 278983 . ? . description=dust scaffold_54 . repeat_region 279821 279830 . ? . description=dust scaffold_54 . repeat_region 283570 283616 . ? . description=dust scaffold_54 . repeat_region 284585 284592 . ? . description=dust scaffold_54 . repeat_region 285269 285276 . ? . description=dust scaffold_54 . repeat_region 285857 285865 . ? . description=dust scaffold_54 ensembl protein_coding_gene 280182 280586 . + . ID=Physo137469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540055;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 280182 280586 . + . ID=Physo137469;Parent=Physo137469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 280182 280586 . + 0 ID=Physo137469;Parent=Physo137469;rank=1 scaffold_54 . exon 280182 280586 . + . ID=Physo137469.1;Parent=Physo137469;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 285972 286826 . - . ID=Physo137470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540056;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 285972 286826 . - . ID=Physo137470;Parent=Physo137470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 285972 286826 . - 0 ID=Physo137470;Parent=Physo137470;rank=1 scaffold_54 . exon 285972 286826 . - . ID=Physo137470.1;Parent=Physo137470;constitutive=1;rank=1 scaffold_54 . biological_region 287841 287844 0.999 + . logic_name=eponine scaffold_54 . biological_region 288614 288617 0.999 + . logic_name=eponine scaffold_54 . biological_region 288635 288640 0.999 - . logic_name=eponine scaffold_54 . biological_region 289149 289150 0.999 + . logic_name=eponine scaffold_54 . repeat_region 290745 290772 . ? . description=trf scaffold_54 . biological_region 294074 294078 0.999 - . logic_name=eponine scaffold_54 . biological_region 294911 294915 0.999 + . logic_name=eponine scaffold_54 . biological_region 294921 294922 0.999 + . logic_name=eponine scaffold_54 . repeat_region 295075 295113 . ? . description=trf scaffold_54 . repeat_region 295309 295329 . ? . description=trf scaffold_54 ensembl protein_coding_gene 292332 295262 . - . ID=Physo137472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540058;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 292332 295262 . - . ID=Physo137472;Parent=Physo137472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 292332 295262 . - 0 ID=Physo137472;Parent=Physo137472;rank=1 scaffold_54 . exon 292332 295262 . - . ID=Physo137472.1;Parent=Physo137472;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 288536 289161 . + . ID=Physo157608;biotype=protein_coding;external_name=C_scaffold_54000010;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 288536 289161 . + . ID=Physo157608;Parent=Physo157608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 288536 289161 . + 0 ID=Physo157608;Parent=Physo157608;rank=1 scaffold_54 . exon 288536 289161 . + . ID=Physo157608.1;Parent=Physo157608;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 305685 306488 . - . ID=Physo109036;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540010;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 305685 306488 . - . ID=Physo109036;Parent=Physo109036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 305685 306488 . - 0 ID=Physo109036;Parent=Physo109036;rank=1 scaffold_54 . exon 305685 306488 . - . ID=Physo109036.1;Parent=Physo109036;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 300124 300770 . - . ID=Physo137473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540059;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 300124 300770 . - . ID=Physo137473;Parent=Physo137473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 300124 300348 . - 0 ID=Physo137473;Parent=Physo137473;rank=3 scaffold_54 . exon 300124 300348 . - . ID=Physo137473.3;Parent=Physo137473;constitutive=1;rank=3 scaffold_54 . CDS 300410 300589 . - 0 ID=Physo137473;Parent=Physo137473;rank=2 scaffold_54 . exon 300410 300589 . - . ID=Physo137473.2;Parent=Physo137473;constitutive=1;rank=2 scaffold_54 . CDS 300654 300770 . - 0 ID=Physo137473;Parent=Physo137473;rank=1 scaffold_54 . exon 300654 300770 . - . ID=Physo137473.1;Parent=Physo137473;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 302297 303451 . + . ID=Physo137474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540060;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 302297 303451 . + . ID=Physo137474;Parent=Physo137474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 302297 302449 . + 0 ID=Physo137474;Parent=Physo137474;rank=1 scaffold_54 . exon 302297 302449 . + . ID=Physo137474.1;Parent=Physo137474;constitutive=1;rank=1 scaffold_54 . CDS 302540 302613 . + 0 ID=Physo137474;Parent=Physo137474;rank=2 scaffold_54 . exon 302540 302613 . + . ID=Physo137474.2;Parent=Physo137474;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 302732 302810 . + 0 ID=Physo137474;Parent=Physo137474;rank=3 scaffold_54 . exon 302732 302810 . + . ID=Physo137474.3;Parent=Physo137474;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 302900 303131 . + 0 ID=Physo137474;Parent=Physo137474;rank=4 scaffold_54 . exon 302900 303131 . + . ID=Physo137474.4;Parent=Physo137474;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_54 . CDS 303206 303275 . + 0 ID=Physo137474;Parent=Physo137474;rank=5 scaffold_54 . exon 303206 303275 . + . ID=Physo137474.5;Parent=Physo137474;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_54 . CDS 303355 303451 . + 0 ID=Physo137474;Parent=Physo137474;rank=6 scaffold_54 . exon 303355 303451 . + . ID=Physo137474.6;Parent=Physo137474;constitutive=1;ensembl_phase=2;rank=6 scaffold_54 ensembl protein_coding_gene 303805 304896 . - . ID=Physo137475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540061;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 303805 304896 . - . ID=Physo137475;Parent=Physo137475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 303805 304740 . - 0 ID=Physo137475;Parent=Physo137475;rank=1 scaffold_54 . exon 303805 304896 . - . ID=Physo137475.1;Parent=Physo137475;constitutive=1;ensembl_phase=-1;rank=1 scaffold_54 . biological_region 308634 308638 0.999 + . logic_name=eponine scaffold_54 . biological_region 308693 308698 0.999 + . logic_name=eponine scaffold_54 . biological_region 308723 308740 0.999 - . logic_name=eponine scaffold_54 . biological_region 308956 308961 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 306941 308606 . - . ID=Physo118482;biotype=protein_coding;external_name=estExt_Genewise1.C_540013;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 306941 308606 . - . ID=Physo118482;Parent=Physo118482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 306941 307704 . - . ID=Physo118482.4;Parent=Physo118482;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_54 . CDS 307021 307704 . - 0 ID=Physo118482;Parent=Physo118482;rank=4 scaffold_54 . CDS 307763 307887 . - 0 ID=Physo118482;Parent=Physo118482;rank=3 scaffold_54 . exon 307763 307887 . - . ID=Physo118482.3;Parent=Physo118482;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 307950 308091 . - 0 ID=Physo118482;Parent=Physo118482;rank=2 scaffold_54 . exon 307950 308091 . - . ID=Physo118482.2;Parent=Physo118482;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_54 . CDS 308157 308564 . - 0 ID=Physo118482;Parent=Physo118482;rank=1 scaffold_54 . exon 308157 308606 . - . ID=Physo118482.1;Parent=Physo118482;constitutive=1;ensembl_phase=-1;rank=1 scaffold_54 ensembl protein_coding_gene 313287 320663 . + . ID=Physo118492;biotype=protein_coding;external_name=estExt_Genewise1.C_540023;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 313287 320663 . + . ID=Physo118492;Parent=Physo118492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 313287 316904 . + . ID=Physo118492.1;Parent=Physo118492;constitutive=1;ensembl_phase=-1;rank=1 scaffold_54 . CDS 313305 316904 . + 0 ID=Physo118492;Parent=Physo118492;rank=1 scaffold_54 . CDS 316983 319197 . + 0 ID=Physo118492;Parent=Physo118492;rank=2 scaffold_54 . CDS 319237 320663 . + 0 ID=Physo118492;Parent=Physo118492;rank=3 scaffold_54 ensembl protein_coding_gene 310848 312346 . + . ID=Physo137480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540066;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 310848 312346 . + . ID=Physo137480;Parent=Physo137480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 310848 312291 . + 0 ID=Physo137480;Parent=Physo137480;rank=1 scaffold_54 . exon 310848 312291 . + . ID=Physo137480.1;Parent=Physo137480;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 312342 312346 . + 0 ID=Physo137480;Parent=Physo137480;rank=2 scaffold_54 . exon 312342 312346 . + . ID=Physo137480.2;Parent=Physo137480;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 ensembl protein_coding_gene 309416 310656 . - . ID=Physo157609;biotype=protein_coding;external_name=C_scaffold_54000011;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 309416 310656 . - . ID=Physo157609;Parent=Physo157609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 309416 309559 . - 0 ID=Physo157609;Parent=Physo157609;rank=4 scaffold_54 . exon 309416 309559 . - . ID=Physo157609.4;Parent=Physo157609;constitutive=1;rank=4 scaffold_54 . CDS 309637 310187 . - 0 ID=Physo157609;Parent=Physo157609;rank=3 scaffold_54 . exon 309637 310187 . - . ID=Physo157609.3;Parent=Physo157609;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 310298 310442 . - 0 ID=Physo157609;Parent=Physo157609;rank=2 scaffold_54 . exon 310298 310442 . - . ID=Physo157609.2;Parent=Physo157609;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_54 . CDS 310525 310656 . - 0 ID=Physo157609;Parent=Physo157609;rank=1 scaffold_54 . exon 310525 310656 . - . ID=Physo157609.1;Parent=Physo157609;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 323634 325633 . - . ID=Physo109040;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540014;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 323634 325633 . - . ID=Physo109040;Parent=Physo109040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 323634 324015 . - . ID=Physo109040.9;Parent=Physo109040;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_54 . CDS 323662 324015 . - 0 ID=Physo109040;Parent=Physo109040;rank=9 scaffold_54 . CDS 324081 324170 . - 0 ID=Physo109040;Parent=Physo109040;rank=8 scaffold_54 . exon 324081 324170 . - . ID=Physo109040.8;Parent=Physo109040;constitutive=1;rank=8 scaffold_54 . CDS 324250 324384 . - 0 ID=Physo109040;Parent=Physo109040;rank=7 scaffold_54 . exon 324250 324384 . - . ID=Physo109040.7;Parent=Physo109040;constitutive=1;rank=7 scaffold_54 . CDS 324455 324643 . - 0 ID=Physo109040;Parent=Physo109040;rank=6 scaffold_54 . exon 324455 324643 . - . ID=Physo109040.6;Parent=Physo109040;constitutive=1;rank=6 scaffold_54 . CDS 324721 324800 . - 0 ID=Physo109040;Parent=Physo109040;rank=5 scaffold_54 . exon 324721 324800 . - . ID=Physo109040.5;Parent=Physo109040;constitutive=1;ensembl_phase=1;rank=5 scaffold_54 . CDS 324887 324997 . - 0 ID=Physo109040;Parent=Physo109040;rank=4 scaffold_54 . exon 324887 324997 . - . ID=Physo109040.4;Parent=Physo109040;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 325084 325262 . - 0 ID=Physo109040;Parent=Physo109040;rank=3 scaffold_54 . exon 325084 325262 . - . ID=Physo109040.3;Parent=Physo109040;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 325335 325408 . - 0 ID=Physo109040;Parent=Physo109040;rank=2 scaffold_54 . exon 325335 325408 . - . ID=Physo109040.2;Parent=Physo109040;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 325489 325599 . - 0 ID=Physo109040;Parent=Physo109040;rank=1 scaffold_54 . exon 325489 325633 . - . ID=Physo109040.1;Parent=Physo109040;constitutive=1;ensembl_phase=-1;rank=1 scaffold_54 . exon 316983 319197 . + . ID=Physo118492.2;Parent=Physo118492;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_54 . exon 319237 320663 . + . ID=Physo118492.3;Parent=Physo118492;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 ensembl protein_coding_gene 322275 323576 . + . ID=Physo118493;biotype=protein_coding;external_name=estExt_Genewise1.C_540024;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 322275 323576 . + . ID=Physo118493;Parent=Physo118493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 322275 323576 . + . ID=Physo118493.1;Parent=Physo118493;constitutive=1;ensembl_phase=-1;rank=1 scaffold_54 . CDS 322290 323576 . + 0 ID=Physo118493;Parent=Physo118493;rank=1 scaffold_54 . biological_region 329786 329789 0.999 - . logic_name=eponine scaffold_54 . biological_region 329832 329835 0.999 - . logic_name=eponine scaffold_54 . biological_region 329841 329846 0.999 + . logic_name=eponine scaffold_54 . biological_region 332725 332728 0.999 - . logic_name=eponine scaffold_54 . repeat_region 333757 333777 . ? . description=trf scaffold_54 . biological_region 333918 333919 0.999 + . logic_name=eponine scaffold_54 . repeat_region 333936 334010 . ? . description=dust scaffold_54 . repeat_region 333947 333981 . ? . description=trf scaffold_54 . repeat_region 334888 334895 . ? . description=dust scaffold_54 ensembl protein_coding_gene 335087 336667 . - . ID=Physo109041;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540015;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 335087 336667 . - . ID=Physo109041;Parent=Physo109041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 335087 336667 . - 0 ID=Physo109041;Parent=Physo109041;rank=1 scaffold_54 . exon 335087 336667 . - . ID=Physo109041.1;Parent=Physo109041;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 326905 329287 . - . ID=Physo137485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540071;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 326905 329287 . - . ID=Physo137485;Parent=Physo137485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 326905 326912 . - 0 ID=Physo137485;Parent=Physo137485;rank=2 scaffold_54 . exon 326905 326912 . - . ID=Physo137485.2;Parent=Physo137485;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 327025 329287 . - 0 ID=Physo137485;Parent=Physo137485;rank=1 scaffold_54 . exon 327025 329287 . - . ID=Physo137485.1;Parent=Physo137485;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 ensembl protein_coding_gene 331257 333996 . - . ID=Physo137486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540072;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 331257 333996 . - . ID=Physo137486;Parent=Physo137486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 331257 331323 . - 0 ID=Physo137486;Parent=Physo137486;rank=2 scaffold_54 . exon 331257 331323 . - . ID=Physo137486.2;Parent=Physo137486;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 331364 333996 . - 0 ID=Physo137486;Parent=Physo137486;rank=1 scaffold_54 . exon 331364 333996 . - . ID=Physo137486.1;Parent=Physo137486;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 343412 344637 . + . ID=Physo137488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540074;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 343412 344637 . + . ID=Physo137488;Parent=Physo137488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 343412 344512 . + 0 ID=Physo137488;Parent=Physo137488;rank=1 scaffold_54 . exon 343412 344637 . + . ID=Physo137488.1;Parent=Physo137488;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_54 . repeat_region 345867 345874 . ? . description=dust scaffold_54 . repeat_region 345972 345985 . ? . description=dust scaffold_54 . biological_region 347490 347498 0.999 + . logic_name=eponine scaffold_54 . biological_region 347587 347588 0.999 - . logic_name=eponine scaffold_54 . biological_region 347615 347624 0.999 - . logic_name=eponine scaffold_54 . biological_region 347676 347680 0.999 + . logic_name=eponine scaffold_54 . biological_region 347862 347863 0.999 + . logic_name=eponine scaffold_54 . biological_region 350503 350505 0.999 - . logic_name=eponine scaffold_54 . biological_region 351165 351169 0.999 + . logic_name=eponine scaffold_54 . biological_region 351191 351194 0.999 - . logic_name=eponine scaffold_54 . biological_region 351200 351204 0.999 - . logic_name=eponine scaffold_54 . repeat_region 353027 353035 . ? . description=dust scaffold_54 . biological_region 354874 354879 0.999 + . logic_name=eponine scaffold_54 . biological_region 354976 354980 0.999 - . logic_name=eponine scaffold_54 . biological_region 355479 355479 0.999 + . logic_name=eponine scaffold_54 . biological_region 355626 355628 0.999 - . logic_name=eponine scaffold_54 . biological_region 355706 355714 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 355288 355868 . - . ID=Physo109042;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540016;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 355288 355868 . - . ID=Physo109042;Parent=Physo109042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 355288 355868 . - . ID=Physo109042.1;Parent=Physo109042;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_54 . CDS 355392 355868 . - 0 ID=Physo109042;Parent=Physo109042;rank=1 scaffold_54 ensembl protein_coding_gene 347340 349754 . + . ID=Physo137489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540075;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 347340 349754 . + . ID=Physo137489;Parent=Physo137489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 347340 349655 . + 0 ID=Physo137489;Parent=Physo137489;rank=1 scaffold_54 . exon 347340 349754 . + . ID=Physo137489.1;Parent=Physo137489;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_54 ensembl protein_coding_gene 351506 353072 . + . ID=Physo137491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540077;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 351506 353072 . + . ID=Physo137491;Parent=Physo137491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 351506 351576 . + . ID=Physo137491.1;Parent=Physo137491;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_54 . CDS 351512 351576 . + 0 ID=Physo137491;Parent=Physo137491;rank=1 scaffold_54 . CDS 351670 351719 . + 0 ID=Physo137491;Parent=Physo137491;rank=2 scaffold_54 . exon 351670 351719 . + . ID=Physo137491.2;Parent=Physo137491;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 351847 351925 . + 0 ID=Physo137491;Parent=Physo137491;rank=3 scaffold_54 . exon 351847 351925 . + . ID=Physo137491.3;Parent=Physo137491;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_54 . CDS 351997 352115 . + 0 ID=Physo137491;Parent=Physo137491;rank=4 scaffold_54 . exon 351997 352115 . + . ID=Physo137491.4;Parent=Physo137491;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_54 . CDS 352201 352433 . + 0 ID=Physo137491;Parent=Physo137491;rank=5 scaffold_54 . exon 352201 352433 . + . ID=Physo137491.5;Parent=Physo137491;constitutive=1;ensembl_phase=1;rank=5 scaffold_54 . CDS 352523 352805 . + 0 ID=Physo137491;Parent=Physo137491;rank=6 scaffold_54 . exon 352523 352805 . + . ID=Physo137491.6;Parent=Physo137491;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_54 . CDS 352885 352967 . + 0 ID=Physo137491;Parent=Physo137491;rank=7 scaffold_54 . exon 352885 353072 . + . ID=Physo137491.7;Parent=Physo137491;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_54 ensembl protein_coding_gene 354019 355097 . - . ID=Physo137493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540079;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 354019 355097 . - . ID=Physo137493;Parent=Physo137493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 354019 355097 . - . ID=Physo137493.1;Parent=Physo137493;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_54 . CDS 354487 355017 . - 0 ID=Physo137493;Parent=Physo137493;rank=1 scaffold_54 ensembl protein_coding_gene 349838 351299 . - . ID=Physo157611;biotype=protein_coding;external_name=C_scaffold_54000013;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 349838 351299 . - . ID=Physo157611;Parent=Physo157611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 349838 350500 . - 0 ID=Physo157611;Parent=Physo157611;rank=4 scaffold_54 . exon 349838 350500 . - . ID=Physo157611.4;Parent=Physo157611;constitutive=1;rank=4 scaffold_54 . CDS 350607 350810 . - 0 ID=Physo157611;Parent=Physo157611;rank=3 scaffold_54 . exon 350607 350810 . - . ID=Physo157611.3;Parent=Physo157611;constitutive=1;rank=3 scaffold_54 . CDS 350882 350986 . - 0 ID=Physo157611;Parent=Physo157611;rank=2 scaffold_54 . exon 350882 350986 . - . ID=Physo157611.2;Parent=Physo157611;constitutive=1;rank=2 scaffold_54 . CDS 351063 351299 . - 0 ID=Physo157611;Parent=Physo157611;rank=1 scaffold_54 . exon 351063 351299 . - . ID=Physo157611.1;Parent=Physo157611;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 353222 353940 . + . ID=Physo157613;biotype=protein_coding;external_name=C_scaffold_54000015;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 353222 353940 . + . ID=Physo157613;Parent=Physo157613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 353222 353592 . + 0 ID=Physo157613;Parent=Physo157613;rank=1 scaffold_54 . exon 353222 353592 . + . ID=Physo157613.1;Parent=Physo157613;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . CDS 353685 353940 . + 0 ID=Physo157613;Parent=Physo157613;rank=2 scaffold_54 . exon 353685 353940 . + . ID=Physo157613.2;Parent=Physo157613;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 ensembl protein_coding_gene 360544 362139 . - . ID=Physo137495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540081;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 360544 362139 . - . ID=Physo137495;Parent=Physo137495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 360544 361122 . - 0 ID=Physo137495;Parent=Physo137495;rank=5 scaffold_54 . exon 360544 361122 . - . ID=Physo137495.5;Parent=Physo137495;constitutive=1;rank=5 scaffold_54 . CDS 361316 361429 . - 0 ID=Physo137495;Parent=Physo137495;rank=4 scaffold_54 . exon 361316 361429 . - . ID=Physo137495.4;Parent=Physo137495;constitutive=1;rank=4 scaffold_54 . CDS 361503 361667 . - 0 ID=Physo137495;Parent=Physo137495;rank=3 scaffold_54 . exon 361503 361667 . - . ID=Physo137495.3;Parent=Physo137495;constitutive=1;rank=3 scaffold_54 . CDS 361787 361808 . - 0 ID=Physo137495;Parent=Physo137495;rank=2 scaffold_54 . exon 361787 361808 . - . ID=Physo137495.2;Parent=Physo137495;constitutive=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 361961 362139 . - 0 ID=Physo137495;Parent=Physo137495;rank=1 scaffold_54 . exon 361961 362139 . - . ID=Physo137495.1;Parent=Physo137495;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 . repeat_region 367171 367212 . ? . description=trf scaffold_54 . biological_region 368649 368654 0.999 + . logic_name=eponine scaffold_54 . biological_region 369214 369215 0.999 + . logic_name=eponine scaffold_54 . repeat_region 373195 373287 . ? . description=trf scaffold_54 . repeat_region 373638 373687 . ? . description=dust scaffold_54 ensembl protein_coding_gene 368595 370087 . + . ID=Physo137496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540082;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 368595 370087 . + . ID=Physo137496;Parent=Physo137496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 368595 368666 . + 0 ID=Physo137496;Parent=Physo137496;rank=1 scaffold_54 . exon 368595 368666 . + . ID=Physo137496.1;Parent=Physo137496;constitutive=1;rank=1 scaffold_54 . CDS 368769 369249 . + 0 ID=Physo137496;Parent=Physo137496;rank=2 scaffold_54 . exon 368769 369249 . + . ID=Physo137496.2;Parent=Physo137496;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_54 . CDS 369477 370087 . + 0 ID=Physo137496;Parent=Physo137496;rank=3 scaffold_54 . exon 369477 370087 . + . ID=Physo137496.3;Parent=Physo137496;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 ensembl protein_coding_gene 370649 371819 . - . ID=Physo137497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540083;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 370649 371819 . - . ID=Physo137497;Parent=Physo137497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 370649 371308 . - 0 ID=Physo137497;Parent=Physo137497;rank=2 scaffold_54 . exon 370649 371308 . - . ID=Physo137497.2;Parent=Physo137497;constitutive=1;rank=2 scaffold_54 . CDS 371496 371819 . - 0 ID=Physo137497;Parent=Physo137497;rank=1 scaffold_54 . exon 371496 371819 . - . ID=Physo137497.1;Parent=Physo137497;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 380999 383680 . + . ID=Physo137498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540084;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 380999 383680 . + . ID=Physo137498;Parent=Physo137498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 380999 381605 . + 0 ID=Physo137498;Parent=Physo137498;rank=1 scaffold_54 . exon 380999 381605 . + . ID=Physo137498.1;Parent=Physo137498;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_54 . CDS 381738 383680 . + 0 ID=Physo137498;Parent=Physo137498;rank=2 scaffold_54 . exon 381738 383680 . + . ID=Physo137498.2;Parent=Physo137498;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . repeat_region 384347 395972 . ? . description=dust scaffold_54 . biological_region 396116 396124 0.999 - . logic_name=eponine scaffold_54 . biological_region 396129 396132 0.999 - . logic_name=eponine scaffold_54 . repeat_region 400815 400856 . ? . description=trf scaffold_54 . repeat_region 402229 402270 . ? . description=trf scaffold_54 . biological_region 403754 403757 0.999 - . logic_name=eponine scaffold_54 . biological_region 404313 404318 0.999 - . logic_name=eponine scaffold_54 . biological_region 404420 404422 0.999 - . logic_name=eponine scaffold_54 . biological_region 404677 404678 0.999 - . logic_name=eponine scaffold_54 . biological_region 405099 405103 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 402599 405937 . + . ID=Physo137499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540085;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 402599 405937 . + . ID=Physo137499;Parent=Physo137499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 402599 404884 . + 0 ID=Physo137499;Parent=Physo137499;rank=1 scaffold_54 . exon 402599 404884 . + . ID=Physo137499.1;Parent=Physo137499;constitutive=1;rank=1 scaffold_54 . CDS 405077 405937 . + 0 ID=Physo137499;Parent=Physo137499;rank=2 scaffold_54 . exon 405077 405937 . + . ID=Physo137499.2;Parent=Physo137499;constitutive=1;rank=2 scaffold_54 . repeat_region 413929 413936 . ? . description=dust scaffold_54 ensembl protein_coding_gene 408767 410437 . + . ID=Physo137500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540086;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 408767 410437 . + . ID=Physo137500;Parent=Physo137500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 408767 410437 . + 0 ID=Physo137500;Parent=Physo137500;rank=1 scaffold_54 . exon 408767 410437 . + . ID=Physo137500.1;Parent=Physo137500;constitutive=1;rank=1 scaffold_54 . repeat_region 415568 415600 . ? . description=trf scaffold_54 . repeat_region 420261 420326 . ? . description=trf scaffold_54 . repeat_region 421290 421335 . ? . description=trf scaffold_54 . biological_region 425320 425322 0.999 + . logic_name=eponine scaffold_54 . biological_region 425340 425342 0.999 + . logic_name=eponine scaffold_54 . biological_region 425393 425395 0.999 - . logic_name=eponine scaffold_54 . biological_region 425405 425408 0.999 - . logic_name=eponine scaffold_54 . biological_region 425484 425485 0.999 + . logic_name=eponine scaffold_54 . biological_region 433595 433599 0.999 - . logic_name=eponine scaffold_54 ensembl protein_coding_gene 432047 433917 . - . ID=Physo109043;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540017;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 432047 433917 . - . ID=Physo109043;Parent=Physo109043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 432047 432381 . - 0 ID=Physo109043;Parent=Physo109043;rank=3 scaffold_54 . exon 432047 432381 . - . ID=Physo109043.3;Parent=Physo109043;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 432465 433789 . - 0 ID=Physo109043;Parent=Physo109043;rank=2 scaffold_54 . exon 432465 433789 . - . ID=Physo109043.2;Parent=Physo109043;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_54 . CDS 433844 433917 . - 0 ID=Physo109043;Parent=Physo109043;rank=1 scaffold_54 . exon 433844 433917 . - . ID=Physo109043.1;Parent=Physo109043;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_54 ensembl protein_coding_gene 434417 436334 . - . ID=Physo109044;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540018;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 434417 436334 . - . ID=Physo109044;Parent=Physo109044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 434417 434751 . - 0 ID=Physo109044;Parent=Physo109044;rank=3 scaffold_54 . exon 434417 434751 . - . ID=Physo109044.3;Parent=Physo109044;constitutive=1;ensembl_phase=1;rank=3 scaffold_54 . CDS 434835 436159 . - 0 ID=Physo109044;Parent=Physo109044;rank=2 scaffold_54 . CDS 436214 436290 . - 0 ID=Physo109044;Parent=Physo109044;rank=1 scaffold_54 ensembl protein_coding_gene 425251 426732 . + . ID=Physo137501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540087;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 425251 426732 . + . ID=Physo137501;Parent=Physo137501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 425251 426732 . + 0 ID=Physo137501;Parent=Physo137501;rank=1 scaffold_54 . exon 425251 426732 . + . ID=Physo137501.1;Parent=Physo137501;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 429222 431846 . + . ID=Physo137502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540088;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 429222 431846 . + . ID=Physo137502;Parent=Physo137502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 429222 431846 . + 0 ID=Physo137502;Parent=Physo137502;rank=1 scaffold_54 . exon 429222 431846 . + . ID=Physo137502.1;Parent=Physo137502;constitutive=1;rank=1 scaffold_54 . repeat_region 444113 444126 . ? . description=dust scaffold_54 . repeat_region 444156 444199 . ? . description=trf scaffold_54 . exon 434835 436159 . - . ID=Physo109044.2;Parent=Physo109044;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_54 . exon 436214 436334 . - . ID=Physo109044.1;Parent=Physo109044;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_54 ensembl protein_coding_gene 437695 439349 . - . ID=Physo109045;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540019;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 437695 439349 . - . ID=Physo109045;Parent=Physo109045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 437695 437941 . - . ID=Physo109045.5;Parent=Physo109045;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_54 . CDS 437765 437941 . - 0 ID=Physo109045;Parent=Physo109045;rank=5 scaffold_54 . CDS 438030 438187 . - 0 ID=Physo109045;Parent=Physo109045;rank=4 scaffold_54 . exon 438030 438187 . - . ID=Physo109045.4;Parent=Physo109045;constitutive=1;ensembl_phase=1;rank=4 scaffold_54 . CDS 438258 438327 . - 0 ID=Physo109045;Parent=Physo109045;rank=3 scaffold_54 . exon 438258 438327 . - . ID=Physo109045.3;Parent=Physo109045;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_54 . CDS 438400 439203 . - 0 ID=Physo109045;Parent=Physo109045;rank=2 scaffold_54 . exon 438400 439203 . - . ID=Physo109045.2;Parent=Physo109045;constitutive=1;rank=2 scaffold_54 . CDS 439307 439345 . - 0 ID=Physo109045;Parent=Physo109045;rank=1 scaffold_54 . exon 439307 439349 . - . ID=Physo109045.1;Parent=Physo109045;constitutive=1;ensembl_phase=-1;rank=1 scaffold_54 ensembl protein_coding_gene 439525 440981 . + . ID=Physo109046;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540020;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 439525 440981 . + . ID=Physo109046;Parent=Physo109046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . exon 439525 439682 . + . ID=Physo109046.1;Parent=Physo109046;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_54 . CDS 439544 439682 . + 0 ID=Physo109046;Parent=Physo109046;rank=1 scaffold_54 . CDS 440324 440493 . + 0 ID=Physo109046;Parent=Physo109046;rank=2 scaffold_54 . exon 440324 440493 . + . ID=Physo109046.2;Parent=Physo109046;constitutive=1;ensembl_phase=1;rank=2 scaffold_54 . CDS 440565 440867 . + 0 ID=Physo109046;Parent=Physo109046;rank=3 scaffold_54 . exon 440565 440981 . + . ID=Physo109046.3;Parent=Physo109046;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_54 ensembl protein_coding_gene 441174 444058 . - . ID=Physo137507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540093;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 441174 444058 . - . ID=Physo137507;Parent=Physo137507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 441174 441653 . - 0 ID=Physo137507;Parent=Physo137507;rank=2 scaffold_54 . exon 441174 441653 . - . ID=Physo137507.2;Parent=Physo137507;constitutive=1;rank=2 scaffold_54 . CDS 441731 444058 . - 0 ID=Physo137507;Parent=Physo137507;rank=1 scaffold_54 . exon 441731 444058 . - . ID=Physo137507.1;Parent=Physo137507;constitutive=1;rank=1 scaffold_54 . repeat_region 447707 448010 . - . description=GypsyPi-1c_LTR scaffold_54 . biological_region 448930 448931 0.999 - . logic_name=eponine scaffold_54 . biological_region 449342 449346 0.999 - . logic_name=eponine scaffold_54 . biological_region 450136 450140 0.999 + . logic_name=eponine scaffold_54 . biological_region 450335 450336 0.999 + . logic_name=eponine scaffold_54 ensembl protein_coding_gene 452349 456228 . + . ID=Physo137508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_540094;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 452349 456228 . + . ID=Physo137508;Parent=Physo137508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 452349 452438 . + 0 ID=Physo137508;Parent=Physo137508;rank=1 scaffold_54 . exon 452349 452438 . + . ID=Physo137508.1;Parent=Physo137508;constitutive=1;rank=1 scaffold_54 . CDS 452504 452989 . + 0 ID=Physo137508;Parent=Physo137508;rank=2 scaffold_54 . exon 452504 452989 . + . ID=Physo137508.2;Parent=Physo137508;constitutive=1;rank=2 scaffold_54 . CDS 453066 453646 . + 0 ID=Physo137508;Parent=Physo137508;rank=3 scaffold_54 . exon 453066 453646 . + . ID=Physo137508.3;Parent=Physo137508;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_54 . CDS 453712 453881 . + 0 ID=Physo137508;Parent=Physo137508;rank=4 scaffold_54 . exon 453712 453881 . + . ID=Physo137508.4;Parent=Physo137508;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_54 . CDS 454033 454625 . + 0 ID=Physo137508;Parent=Physo137508;rank=5 scaffold_54 . exon 454033 454625 . + . ID=Physo137508.5;Parent=Physo137508;constitutive=1;ensembl_phase=1;rank=5 scaffold_54 . CDS 454849 455046 . + 0 ID=Physo137508;Parent=Physo137508;rank=6 scaffold_54 . CDS 455107 455300 . + 0 ID=Physo137508;Parent=Physo137508;rank=7 scaffold_54 . CDS 455375 455602 . + 0 ID=Physo137508;Parent=Physo137508;rank=8 scaffold_54 . CDS 455774 456203 . + 0 ID=Physo137508;Parent=Physo137508;rank=9 scaffold_54 . repeat_region 463479 464398 . ? . description=trf scaffold_54 . repeat_region 463594 463622 . ? . description=trf scaffold_54 . repeat_region 463999 464027 . ? . description=trf scaffold_54 ensembl tRNA_gene 464237 464308 . - . ID=EPrPSOG00000000073;biotype=tRNA;description=tRNA-Pro for anticodon UGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_54 ensembl transcript 464237 464308 . - . ID=EPrPSOT00000000073;Parent=EPrPSOG00000000073;biotype=tRNA;logic_name=ncrna_eg scaffold_54 ensembl tRNA_gene 463831 463902 . - . ID=EPrPSOG00000000288;biotype=tRNA;description=tRNA-Pro for anticodon UGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_54 ensembl transcript 463831 463902 . - . ID=EPrPSOT00000000288;Parent=EPrPSOG00000000288;biotype=tRNA;logic_name=ncrna_eg scaffold_54 . exon 464237 464308 . - . ID=EPrPSOE00000000073;Parent=EPrPSOT00000000073;constitutive=1;rank=1 scaffold_54 . exon 463831 463902 . - . ID=EPrPSOE00000000288;Parent=EPrPSOT00000000288;constitutive=1;rank=1 scaffold_54 ensembl protein_coding_gene 462242 462952 . + . ID=Physo109047;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_540021;logic_name=jgi_physo1_1 scaffold_54 ensembl transcript 462242 462952 . + . ID=Physo109047;Parent=Physo109047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_54 . CDS 462242 462778 . + 0 ID=Physo109047;Parent=Physo109047;rank=1 scaffold_54 . exon 462242 462778 . + . ID=Physo109047.1;Parent=Physo109047;constitutive=1;rank=1 scaffold_54 . CDS 462799 462809 . + 0 ID=Physo109047;Parent=Physo109047;rank=2 scaffold_54 . exon 462799 462809 . + . ID=Physo109047.2;Parent=Physo109047;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_54 . CDS 462845 462905 . + 0 ID=Physo109047;Parent=Physo109047;rank=3 scaffold_54 . exon 462845 462905 . + . ID=Physo109047.3;Parent=Physo109047;constitutive=1;ensembl_phase=2;rank=3 scaffold_54 . CDS 462935 462952 . + 0 ID=Physo109047;Parent=Physo109047;rank=4 scaffold_54 . exon 462935 462952 . + . ID=Physo109047.4;Parent=Physo109047;constitutive=1;rank=4 scaffold_54 . exon 454849 455046 . + . ID=Physo137508.6;Parent=Physo137508;constitutive=1;rank=6 scaffold_54 . exon 455107 455300 . + . ID=Physo137508.7;Parent=Physo137508;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_54 . exon 455375 455602 . + . ID=Physo137508.8;Parent=Physo137508;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_54 . exon 455774 456228 . + . ID=Physo137508.9;Parent=Physo137508;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=9 ##gff-version 3 ##sequence-region scaffold_55 1 466917 scaffold_55 . biological_region 1724 1725 0.999 - . logic_name=eponine scaffold_55 . biological_region 1741 1742 0.999 + . logic_name=eponine scaffold_55 . biological_region 1756 1759 0.999 - . logic_name=eponine scaffold_55 . biological_region 2116 2122 0.999 + . logic_name=eponine scaffold_55 . biological_region 2198 2199 0.999 - . logic_name=eponine scaffold_55 . biological_region 4807 4809 0.999 + . logic_name=eponine scaffold_55 . biological_region 5765 5766 0.999 - . logic_name=eponine scaffold_55 . biological_region 5839 5843 0.999 + . logic_name=eponine scaffold_55 . repeat_region 6167 6190 . ? . description=dust scaffold_55 . repeat_region 6167 6194 . ? . description=trf scaffold_55 . repeat_region 6656 6680 . ? . description=trf scaffold_55 . repeat_region 7258 7302 . ? . description=trf scaffold_55 . repeat_region 7265 7328 . ? . description=dust scaffold_55 ensembl protein_coding_gene 1275 3518 . + . ID=Physo118708;biotype=protein_coding;external_name=estExt_Genewise1.C_550108;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 1275 3518 . + . ID=Physo118708;Parent=Physo118708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 1275 1417 . + . ID=Physo118708.1;Parent=Physo118708;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_55 . CDS 1278 1417 . + 0 ID=Physo118708;Parent=Physo118708;rank=1 scaffold_55 . CDS 1495 2270 . + 0 ID=Physo118708;Parent=Physo118708;rank=2 scaffold_55 . exon 1495 2270 . + . ID=Physo118708.2;Parent=Physo118708;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_55 . CDS 2343 2543 . + 0 ID=Physo118708;Parent=Physo118708;rank=3 scaffold_55 . exon 2343 2543 . + . ID=Physo118708.3;Parent=Physo118708;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 2611 3518 . + 0 ID=Physo118708;Parent=Physo118708;rank=4 scaffold_55 . exon 2611 3518 . + . ID=Physo118708.4;Parent=Physo118708;constitutive=1;ensembl_phase=1;rank=4 scaffold_55 ensembl protein_coding_gene 1 693 . - . ID=Physo137510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550001;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 1 693 . - . ID=Physo137510;Parent=Physo137510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 1 269 . - . ID=Physo137510.2;Parent=Physo137510;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_55 . CDS 254 269 . - 0 ID=Physo137510;Parent=Physo137510;rank=2 scaffold_55 . CDS 355 692 . - 0 ID=Physo137510;Parent=Physo137510;rank=1 scaffold_55 . exon 355 693 . - . ID=Physo137510.1;Parent=Physo137510;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_55 ensembl protein_coding_gene 3635 5164 . - . ID=Physo137512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550003;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 3635 5164 . - . ID=Physo137512;Parent=Physo137512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 3635 4640 . - . ID=Physo137512.2;Parent=Physo137512;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_55 . CDS 3739 4640 . - 0 ID=Physo137512;Parent=Physo137512;rank=2 scaffold_55 . CDS 4729 5164 . - 0 ID=Physo137512;Parent=Physo137512;rank=1 scaffold_55 . exon 4729 5164 . - . ID=Physo137512.1;Parent=Physo137512;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 5397 6173 . + . ID=Physo137513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550004;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 5397 6173 . + . ID=Physo137513;Parent=Physo137513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 5397 6173 . + 0 ID=Physo137513;Parent=Physo137513;rank=1 scaffold_55 . exon 5397 6173 . + . ID=Physo137513.1;Parent=Physo137513;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 6456 6848 . + . ID=Physo137514;biotype=protein_coding;description=PsAvh73 [Source:UniProtKB/TrEMBL%3BAcc:E0W5A0];external_name=estExt_fgenesh1_pg.C_550005;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 6456 6848 . + . ID=Physo137514;Parent=Physo137514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 6456 6848 . + 0 ID=Physo137514;Parent=Physo137514;rank=1 scaffold_55 . exon 6456 6848 . + . ID=Physo137514.1;Parent=Physo137514;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 6931 7887 . - . ID=Physo137515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550006;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 6931 7887 . - . ID=Physo137515;Parent=Physo137515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 6931 7887 . - . ID=Physo137515.1;Parent=Physo137515;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_55 . CDS 7063 7887 . - 0 ID=Physo137515;Parent=Physo137515;rank=1 scaffold_55 ensembl protein_coding_gene 8230 10440 . + . ID=Physo137516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550007;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 8230 10440 . + . ID=Physo137516;Parent=Physo137516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 8230 8529 . + 0 ID=Physo137516;Parent=Physo137516;rank=1 scaffold_55 . exon 8230 8529 . + . ID=Physo137516.1;Parent=Physo137516;constitutive=1;rank=1 scaffold_55 . CDS 8650 10440 . + 0 ID=Physo137516;Parent=Physo137516;rank=2 scaffold_55 . exon 8650 10440 . + . ID=Physo137516.2;Parent=Physo137516;constitutive=1;rank=2 scaffold_55 ensembl protein_coding_gene 16026 17216 . - . ID=Physo137519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550010;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 16026 17216 . - . ID=Physo137519;Parent=Physo137519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 16026 16937 . - . ID=Physo137519.2;Parent=Physo137519;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_55 . CDS 16385 16937 . - 0 ID=Physo137519;Parent=Physo137519;rank=2 scaffold_55 . CDS 17026 17216 . - 0 ID=Physo137519;Parent=Physo137519;rank=1 scaffold_55 . exon 17026 17216 . - . ID=Physo137519.1;Parent=Physo137519;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 ensembl protein_coding_gene 17513 18493 . - . ID=Physo137520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550011;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 17513 18493 . - . ID=Physo137520;Parent=Physo137520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 17513 18493 . - 0 ID=Physo137520;Parent=Physo137520;rank=1 scaffold_55 . exon 17513 18493 . - . ID=Physo137520.1;Parent=Physo137520;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 10495 13569 . - . ID=Physo157618;biotype=protein_coding;external_name=C_scaffold_55000002;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 10495 13569 . - . ID=Physo157618;Parent=Physo157618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 10495 11202 . - 0 ID=Physo157618;Parent=Physo157618;rank=4 scaffold_55 . exon 10495 11202 . - . ID=Physo157618.4;Parent=Physo157618;constitutive=1;rank=4 scaffold_55 . CDS 11381 12257 . - 0 ID=Physo157618;Parent=Physo157618;rank=3 scaffold_55 . exon 11381 12257 . - . ID=Physo157618.3;Parent=Physo157618;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 . CDS 12622 13176 . - 0 ID=Physo157618;Parent=Physo157618;rank=2 scaffold_55 . exon 12622 13176 . - . ID=Physo157618.2;Parent=Physo157618;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_55 . CDS 13241 13569 . - 0 ID=Physo157618;Parent=Physo157618;rank=1 scaffold_55 . exon 13241 13569 . - . ID=Physo157618.1;Parent=Physo157618;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 ensembl protein_coding_gene 13811 14773 . - . ID=Physo157619;biotype=protein_coding;external_name=C_scaffold_55000003;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 13811 14773 . - . ID=Physo157619;Parent=Physo157619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 13811 14773 . - 0 ID=Physo157619;Parent=Physo157619;rank=1 scaffold_55 . exon 13811 14773 . - . ID=Physo157619.1;Parent=Physo157619;constitutive=1;rank=1 scaffold_55 . repeat_region 20683 20708 . ? . description=trf scaffold_55 . repeat_region 20979 20986 . ? . description=dust scaffold_55 . biological_region 23236 23240 0.999 + . logic_name=eponine scaffold_55 ensembl protein_coding_gene 20958 22385 . - . ID=Physo137521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550012;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 20958 22385 . - . ID=Physo137521;Parent=Physo137521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 20958 21881 . - . ID=Physo137521.3;Parent=Physo137521;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_55 . CDS 21050 21881 . - 0 ID=Physo137521;Parent=Physo137521;rank=3 scaffold_55 . CDS 22026 22045 . - 0 ID=Physo137521;Parent=Physo137521;rank=2 scaffold_55 . exon 22026 22045 . - . ID=Physo137521.2;Parent=Physo137521;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_55 . CDS 22122 22385 . - 0 ID=Physo137521;Parent=Physo137521;rank=1 scaffold_55 . exon 22122 22385 . - . ID=Physo137521.1;Parent=Physo137521;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 22903 25182 . + . ID=Physo137522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550013;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 22903 25182 . + . ID=Physo137522;Parent=Physo137522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 22903 24079 . + . ID=Physo137522.1;Parent=Physo137522;constitutive=1;ensembl_phase=-1;rank=1 scaffold_55 . CDS 22931 24079 . + 0 ID=Physo137522;Parent=Physo137522;rank=1 scaffold_55 . CDS 24637 24960 . + 0 ID=Physo137522;Parent=Physo137522;rank=2 scaffold_55 . exon 24637 25182 . + . ID=Physo137522.2;Parent=Physo137522;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_55 ensembl protein_coding_gene 26030 26347 . - . ID=Physo157621;biotype=protein_coding;external_name=C_scaffold_55000005;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 26030 26347 . - . ID=Physo157621;Parent=Physo157621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 26030 26347 . - 0 ID=Physo157621;Parent=Physo157621;rank=1 scaffold_55 . exon 26030 26347 . - . ID=Physo157621.1;Parent=Physo157621;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 27238 33977 . + . ID=Physo157622;biotype=protein_coding;external_name=C_scaffold_55000006;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 27238 33977 . + . ID=Physo157622;Parent=Physo157622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 27238 27690 . + 0 ID=Physo157622;Parent=Physo157622;rank=1 scaffold_55 . exon 27238 27690 . + . ID=Physo157622.1;Parent=Physo157622;constitutive=1;rank=1 scaffold_55 . CDS 27777 28104 . + 0 ID=Physo157622;Parent=Physo157622;rank=2 scaffold_55 . exon 27777 28104 . + . ID=Physo157622.2;Parent=Physo157622;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_55 . CDS 28156 30177 . + 0 ID=Physo157622;Parent=Physo157622;rank=3 scaffold_55 . exon 28156 30177 . + . ID=Physo157622.3;Parent=Physo157622;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 30247 30897 . + 0 ID=Physo157622;Parent=Physo157622;rank=4 scaffold_55 . CDS 30931 31340 . + 0 ID=Physo157622;Parent=Physo157622;rank=5 scaffold_55 . CDS 31377 31829 . + 0 ID=Physo157622;Parent=Physo157622;rank=6 scaffold_55 . CDS 32151 32997 . + 0 ID=Physo157622;Parent=Physo157622;rank=7 scaffold_55 . CDS 33097 33702 . + 0 ID=Physo157622;Parent=Physo157622;rank=8 scaffold_55 . CDS 33739 33977 . + 0 ID=Physo157622;Parent=Physo157622;rank=9 scaffold_55 ensembl protein_coding_gene 39010 40992 . - . ID=Physo109048;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550001;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 39010 40992 . - . ID=Physo109048;Parent=Physo109048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 39010 39045 . - 0 ID=Physo109048;Parent=Physo109048;rank=3 scaffold_55 . exon 39010 39045 . - . ID=Physo109048.3;Parent=Physo109048;constitutive=1;rank=3 scaffold_55 . CDS 39067 40929 . - 0 ID=Physo109048;Parent=Physo109048;rank=2 scaffold_55 . exon 39067 40929 . - . ID=Physo109048.2;Parent=Physo109048;constitutive=1;rank=2 scaffold_55 . CDS 40951 40992 . - 0 ID=Physo109048;Parent=Physo109048;rank=1 scaffold_55 ensembl protein_coding_gene 34169 35410 . - . ID=Physo137525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550016;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 34169 35410 . - . ID=Physo137525;Parent=Physo137525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 34169 35410 . - 0 ID=Physo137525;Parent=Physo137525;rank=1 scaffold_55 . exon 34169 35410 . - . ID=Physo137525.1;Parent=Physo137525;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 38065 38692 . - . ID=Physo137526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550017;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 38065 38692 . - . ID=Physo137526;Parent=Physo137526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 38065 38300 . - 0 ID=Physo137526;Parent=Physo137526;rank=2 scaffold_55 . exon 38065 38300 . - . ID=Physo137526.2;Parent=Physo137526;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 38425 38692 . - 0 ID=Physo137526;Parent=Physo137526;rank=1 scaffold_55 . exon 38425 38692 . - . ID=Physo137526.1;Parent=Physo137526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . exon 30247 30897 . + . ID=Physo157622.4;Parent=Physo157622;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_55 . exon 30931 31340 . + . ID=Physo157622.5;Parent=Physo157622;constitutive=1;ensembl_phase=1;rank=5 scaffold_55 . exon 31377 31829 . + . ID=Physo157622.6;Parent=Physo157622;constitutive=1;rank=6 scaffold_55 . exon 32151 32997 . + . ID=Physo157622.7;Parent=Physo157622;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_55 . exon 33097 33702 . + . ID=Physo157622.8;Parent=Physo157622;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_55 . exon 33739 33977 . + . ID=Physo157622.9;Parent=Physo157622;constitutive=1;ensembl_phase=1;rank=9 scaffold_55 . biological_region 40559 40562 0.999 + . logic_name=eponine scaffold_55 . biological_region 43155 43162 0.999 - . logic_name=eponine scaffold_55 . biological_region 44469 44474 0.999 - . logic_name=eponine scaffold_55 . biological_region 44505 44512 0.999 - . logic_name=eponine scaffold_55 . biological_region 45056 45058 0.999 - . logic_name=eponine scaffold_55 . biological_region 45173 45177 0.999 - . logic_name=eponine scaffold_55 . biological_region 45204 45210 0.999 - . logic_name=eponine scaffold_55 . biological_region 45560 45562 0.999 - . logic_name=eponine scaffold_55 . biological_region 46967 46970 0.999 + . logic_name=eponine scaffold_55 . repeat_region 48298 48350 . ? . description=dust scaffold_55 . exon 40951 40992 . - . ID=Physo109048.1;Parent=Physo109048;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 42467 44639 . + . ID=Physo109049;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550002;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 42467 44639 . + . ID=Physo109049;Parent=Physo109049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 42467 42542 . + . ID=Physo109049.1;Parent=Physo109049;constitutive=1;ensembl_phase=-1;rank=1 scaffold_55 . CDS 42519 42542 . + 0 ID=Physo109049;Parent=Physo109049;rank=1 scaffold_55 . CDS 42597 44501 . + 0 ID=Physo109049;Parent=Physo109049;rank=2 scaffold_55 . exon 42597 44639 . + . ID=Physo109049.2;Parent=Physo109049;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_55 ensembl protein_coding_gene 45730 47613 . + . ID=Physo109050;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550003;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 45730 47613 . + . ID=Physo109050;Parent=Physo109050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 45730 47613 . + 0 ID=Physo109050;Parent=Physo109050;rank=1 scaffold_55 . exon 45730 47613 . + . ID=Physo109050.1;Parent=Physo109050;constitutive=1;rank=1 scaffold_55 . repeat_region 50339 50405 . ? . description=trf scaffold_55 . repeat_region 50407 50444 . ? . description=trf scaffold_55 . repeat_region 53047 53067 . ? . description=trf scaffold_55 . repeat_region 55941 56012 . ? . description=trf scaffold_55 . repeat_region 55941 56017 . ? . description=trf scaffold_55 . repeat_region 55945 56012 . ? . description=trf scaffold_55 . repeat_region 55947 56017 . ? . description=trf scaffold_55 . repeat_region 58630 58812 . - . description=GypsyPi-1c_LTR scaffold_55 ensembl protein_coding_gene 55464 57089 . + . ID=Physo137530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550021;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 55464 57089 . + . ID=Physo137530;Parent=Physo137530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 55464 55942 . + 0 ID=Physo137530;Parent=Physo137530;rank=1 scaffold_55 . exon 55464 55942 . + . ID=Physo137530.1;Parent=Physo137530;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 56057 57089 . + 0 ID=Physo137530;Parent=Physo137530;rank=2 scaffold_55 . exon 56057 57089 . + . ID=Physo137530.2;Parent=Physo137530;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . repeat_region 60294 60301 . ? . description=dust scaffold_55 . biological_region 61396 61399 0.999 - . logic_name=eponine scaffold_55 . biological_region 61452 61453 0.999 + . logic_name=eponine scaffold_55 . biological_region 61477 61480 0.999 + . logic_name=eponine scaffold_55 . repeat_region 61622 61661 . ? . description=dust scaffold_55 . repeat_region 67301 67334 . ? . description=dust scaffold_55 ensembl protein_coding_gene 59793 60239 . + . ID=Physo118655;biotype=protein_coding;external_name=estExt_Genewise1.C_550055;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 59793 60239 . + . ID=Physo118655;Parent=Physo118655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 59793 60239 . + . ID=Physo118655.1;Parent=Physo118655;constitutive=1;ensembl_phase=-1;rank=1 scaffold_55 . CDS 60054 60239 . + 0 ID=Physo118655;Parent=Physo118655;rank=1 scaffold_55 ensembl protein_coding_gene 69335 73276 . + . ID=Physo137533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550024;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 69335 73276 . + . ID=Physo137533;Parent=Physo137533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 69335 73276 . + 0 ID=Physo137533;Parent=Physo137533;rank=1 scaffold_55 . exon 69335 73276 . + . ID=Physo137533.1;Parent=Physo137533;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 61200 62372 . + . ID=Physo157623;biotype=protein_coding;external_name=C_scaffold_55000007;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 61200 62372 . + . ID=Physo157623;Parent=Physo157623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 61200 62220 . + 0 ID=Physo157623;Parent=Physo157623;rank=1 scaffold_55 . exon 61200 62220 . + . ID=Physo157623.1;Parent=Physo157623;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 62284 62372 . + 0 ID=Physo157623;Parent=Physo157623;rank=2 scaffold_55 . exon 62284 62372 . + . ID=Physo157623.2;Parent=Physo157623;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 ensembl protein_coding_gene 66633 68235 . + . ID=Physo157624;biotype=protein_coding;external_name=C_scaffold_55000008;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 66633 68235 . + . ID=Physo157624;Parent=Physo157624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 66633 66885 . + 0 ID=Physo157624;Parent=Physo157624;rank=1 scaffold_55 . exon 66633 66885 . + . ID=Physo157624.1;Parent=Physo157624;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 66937 67091 . + 0 ID=Physo157624;Parent=Physo157624;rank=2 scaffold_55 . exon 66937 67091 . + . ID=Physo157624.2;Parent=Physo157624;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 67445 67532 . + 0 ID=Physo157624;Parent=Physo157624;rank=3 scaffold_55 . exon 67445 67532 . + . ID=Physo157624.3;Parent=Physo157624;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_55 . CDS 67748 67893 . + 0 ID=Physo157624;Parent=Physo157624;rank=4 scaffold_55 . exon 67748 67893 . + . ID=Physo157624.4;Parent=Physo157624;constitutive=1;ensembl_phase=1;rank=4 scaffold_55 . CDS 67992 68075 . + 0 ID=Physo157624;Parent=Physo157624;rank=5 scaffold_55 . exon 67992 68075 . + . ID=Physo157624.5;Parent=Physo157624;constitutive=1;rank=5 scaffold_55 . CDS 68167 68235 . + 0 ID=Physo157624;Parent=Physo157624;rank=6 scaffold_55 . exon 68167 68235 . + . ID=Physo157624.6;Parent=Physo157624;constitutive=1;rank=6 scaffold_55 . repeat_region 74338 74373 . ? . description=trf scaffold_55 . repeat_region 77851 77878 . ? . description=trf scaffold_55 ensembl protein_coding_gene 73403 74432 . - . ID=Physo137534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550025;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 73403 74432 . - . ID=Physo137534;Parent=Physo137534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 73403 74297 . - . ID=Physo137534.2;Parent=Physo137534;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_55 . CDS 73789 74297 . - 0 ID=Physo137534;Parent=Physo137534;rank=2 scaffold_55 . CDS 74386 74410 . - 0 ID=Physo137534;Parent=Physo137534;rank=1 scaffold_55 . exon 74386 74432 . - . ID=Physo137534.1;Parent=Physo137534;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_55 ensembl protein_coding_gene 78244 81620 . - . ID=Physo157625;biotype=protein_coding;external_name=C_scaffold_55000009;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 78244 81620 . - . ID=Physo157625;Parent=Physo157625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 78244 79086 . - 0 ID=Physo157625;Parent=Physo157625;rank=4 scaffold_55 . exon 78244 79086 . - . ID=Physo157625.4;Parent=Physo157625;constitutive=1;rank=4 scaffold_55 . CDS 79129 79518 . - 0 ID=Physo157625;Parent=Physo157625;rank=3 scaffold_55 . exon 79129 79518 . - . ID=Physo157625.3;Parent=Physo157625;constitutive=1;rank=3 scaffold_55 . CDS 79609 80116 . - 0 ID=Physo157625;Parent=Physo157625;rank=2 scaffold_55 . CDS 80638 81620 . - 0 ID=Physo157625;Parent=Physo157625;rank=1 scaffold_55 . biological_region 79814 79823 0.999 + . logic_name=eponine scaffold_55 . biological_region 79835 79839 0.999 - . logic_name=eponine scaffold_55 . biological_region 79964 79966 0.999 - . logic_name=eponine scaffold_55 . biological_region 79989 79994 0.999 - . logic_name=eponine scaffold_55 . biological_region 80059 80060 0.999 - . logic_name=eponine scaffold_55 . biological_region 80082 80088 0.999 - . logic_name=eponine scaffold_55 . biological_region 80605 80608 0.999 - . logic_name=eponine scaffold_55 . repeat_region 81974 82055 . ? . description=dust scaffold_55 . biological_region 82898 82900 0.999 + . logic_name=eponine scaffold_55 . biological_region 83428 83430 0.999 - . logic_name=eponine scaffold_55 . biological_region 83483 83489 0.999 + . logic_name=eponine scaffold_55 . biological_region 83498 83504 0.999 + . logic_name=eponine scaffold_55 . biological_region 83514 83518 0.999 + . logic_name=eponine scaffold_55 . biological_region 83607 83609 0.999 + . logic_name=eponine scaffold_55 . biological_region 83618 83628 0.999 + . logic_name=eponine scaffold_55 . biological_region 83627 83628 0.999 - . logic_name=eponine scaffold_55 . biological_region 83679 83685 0.999 + . logic_name=eponine scaffold_55 . biological_region 83687 83691 0.999 - . logic_name=eponine scaffold_55 . biological_region 83712 83716 0.999 - . logic_name=eponine scaffold_55 . biological_region 84341 84341 0.999 - . logic_name=eponine scaffold_55 . biological_region 84476 84478 0.999 - . logic_name=eponine scaffold_55 . biological_region 84528 84531 0.999 - . logic_name=eponine scaffold_55 . biological_region 84703 84703 0.999 - . logic_name=eponine scaffold_55 . biological_region 87351 87352 0.999 + . logic_name=eponine scaffold_55 . biological_region 87976 87979 0.999 + . logic_name=eponine scaffold_55 . biological_region 88198 88203 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 84233 88402 . + . ID=Physo137537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550028;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 84233 88402 . + . ID=Physo137537;Parent=Physo137537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 84233 87531 . + 0 ID=Physo137537;Parent=Physo137537;rank=1 scaffold_55 . exon 84233 87531 . + . ID=Physo137537.1;Parent=Physo137537;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 87604 88285 . + 0 ID=Physo137537;Parent=Physo137537;rank=2 scaffold_55 . exon 87604 88402 . + . ID=Physo137537.2;Parent=Physo137537;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_55 ensembl protein_coding_gene 88534 90153 . - . ID=Physo137538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550029;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 88534 90153 . - . ID=Physo137538;Parent=Physo137538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 88534 90153 . - 0 ID=Physo137538;Parent=Physo137538;rank=1 scaffold_55 . exon 88534 90153 . - . ID=Physo137538.1;Parent=Physo137538;constitutive=1;rank=1 scaffold_55 . exon 79609 80116 . - . ID=Physo157625.2;Parent=Physo157625;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . exon 80638 81620 . - . ID=Physo157625.1;Parent=Physo157625;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 ensembl protein_coding_gene 81971 83080 . - . ID=Physo157626;biotype=protein_coding;external_name=C_scaffold_55000010;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 81971 83080 . - . ID=Physo157626;Parent=Physo157626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 81971 83080 . - 0 ID=Physo157626;Parent=Physo157626;rank=1 scaffold_55 . exon 81971 83080 . - . ID=Physo157626.1;Parent=Physo157626;constitutive=1;rank=1 scaffold_55 . repeat_region 95438 95467 . ? . description=trf scaffold_55 ensembl protein_coding_gene 95930 97427 . + . ID=Physo137539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550030;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 95930 97427 . + . ID=Physo137539;Parent=Physo137539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 95930 96264 . + 0 ID=Physo137539;Parent=Physo137539;rank=1 scaffold_55 . exon 95930 96264 . + . ID=Physo137539.1;Parent=Physo137539;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 96287 97427 . + 0 ID=Physo137539;Parent=Physo137539;rank=2 scaffold_55 . exon 96287 97427 . + . ID=Physo137539.2;Parent=Physo137539;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . repeat_region 102160 102177 . ? . description=dust scaffold_55 . biological_region 106761 106771 0.999 + . logic_name=eponine scaffold_55 ensembl protein_coding_gene 107278 108261 . - . ID=Physo109052;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550005;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 107278 108261 . - . ID=Physo109052;Parent=Physo109052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 107278 108261 . - 0 ID=Physo109052;Parent=Physo109052;rank=1 scaffold_55 . exon 107278 108261 . - . ID=Physo109052.1;Parent=Physo109052;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 102929 103348 . - . ID=Physo137540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550031;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 102929 103348 . - . ID=Physo137540;Parent=Physo137540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 102929 103231 . - 0 ID=Physo137540;Parent=Physo137540;rank=2 scaffold_55 . exon 102929 103231 . - . ID=Physo137540.2;Parent=Physo137540;constitutive=1;rank=2 scaffold_55 . CDS 103310 103348 . - 0 ID=Physo137540;Parent=Physo137540;rank=1 scaffold_55 . exon 103310 103348 . - . ID=Physo137540.1;Parent=Physo137540;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 117072 118591 . + . ID=Physo109053;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550006;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 117072 118591 . + . ID=Physo109053;Parent=Physo109053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 117072 117112 . + 0 ID=Physo109053;Parent=Physo109053;rank=1 scaffold_55 . exon 117072 117112 . + . ID=Physo109053.1;Parent=Physo109053;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 117303 117462 . + 0 ID=Physo109053;Parent=Physo109053;rank=2 scaffold_55 . exon 117303 117462 . + . ID=Physo109053.2;Parent=Physo109053;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . CDS 117582 117662 . + 0 ID=Physo109053;Parent=Physo109053;rank=3 scaffold_55 . exon 117582 117662 . + . ID=Physo109053.3;Parent=Physo109053;constitutive=1;rank=3 scaffold_55 . CDS 117725 117888 . + 0 ID=Physo109053;Parent=Physo109053;rank=4 scaffold_55 . exon 117725 117888 . + . ID=Physo109053.4;Parent=Physo109053;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_55 . CDS 117948 118084 . + 0 ID=Physo109053;Parent=Physo109053;rank=5 scaffold_55 . exon 117948 118084 . + . ID=Physo109053.5;Parent=Physo109053;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_55 . CDS 118164 118279 . + 0 ID=Physo109053;Parent=Physo109053;rank=6 scaffold_55 . exon 118164 118279 . + . ID=Physo109053.6;Parent=Physo109053;constitutive=1;ensembl_phase=1;rank=6 scaffold_55 . CDS 118346 118591 . + 0 ID=Physo109053;Parent=Physo109053;rank=7 scaffold_55 . exon 118346 118591 . + . ID=Physo109053.7;Parent=Physo109053;constitutive=1;rank=7 scaffold_55 ensembl protein_coding_gene 110564 116839 . - . ID=Physo137542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550033;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 110564 116839 . - . ID=Physo137542;Parent=Physo137542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 110564 116839 . - 0 ID=Physo137542;Parent=Physo137542;rank=1 scaffold_55 . exon 110564 116839 . - . ID=Physo137542.1;Parent=Physo137542;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 118763 121714 . + . ID=Physo137544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550035;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 118763 121714 . + . ID=Physo137544;Parent=Physo137544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 118763 118987 . + 0 ID=Physo137544;Parent=Physo137544;rank=1 scaffold_55 . exon 118763 118987 . + . ID=Physo137544.1;Parent=Physo137544;constitutive=1;rank=1 scaffold_55 . CDS 119090 119308 . + 0 ID=Physo137544;Parent=Physo137544;rank=2 scaffold_55 . exon 119090 119308 . + . ID=Physo137544.2;Parent=Physo137544;constitutive=1;rank=2 scaffold_55 . CDS 119353 119418 . + 0 ID=Physo137544;Parent=Physo137544;rank=3 scaffold_55 . CDS 119495 119675 . + 0 ID=Physo137544;Parent=Physo137544;rank=4 scaffold_55 . CDS 120059 120073 . + 0 ID=Physo137544;Parent=Physo137544;rank=5 scaffold_55 . CDS 120133 121697 . + 0 ID=Physo137544;Parent=Physo137544;rank=6 scaffold_55 . biological_region 123729 123731 0.999 + . logic_name=eponine scaffold_55 . biological_region 123830 123833 0.999 - . logic_name=eponine scaffold_55 . biological_region 123838 123840 0.999 - . logic_name=eponine scaffold_55 . repeat_region 127083 127090 . ? . description=dust scaffold_55 . repeat_region 128816 128858 . ? . description=trf scaffold_55 . exon 119353 119418 . + . ID=Physo137544.3;Parent=Physo137544;constitutive=1;rank=3 scaffold_55 . exon 119495 119675 . + . ID=Physo137544.4;Parent=Physo137544;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_55 . exon 120059 120073 . + . ID=Physo137544.5;Parent=Physo137544;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_55 . exon 120133 121714 . + . ID=Physo137544.6;Parent=Physo137544;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_55 ensembl protein_coding_gene 123319 124205 . + . ID=Physo137545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550036;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 123319 124205 . + . ID=Physo137545;Parent=Physo137545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 123319 123536 . + 0 ID=Physo137545;Parent=Physo137545;rank=1 scaffold_55 . exon 123319 123536 . + . ID=Physo137545.1;Parent=Physo137545;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 123583 123802 . + 0 ID=Physo137545;Parent=Physo137545;rank=2 scaffold_55 . exon 123583 123802 . + . ID=Physo137545.2;Parent=Physo137545;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . CDS 123870 124205 . + 0 ID=Physo137545;Parent=Physo137545;rank=3 scaffold_55 . exon 123870 124205 . + . ID=Physo137545.3;Parent=Physo137545;constitutive=1;rank=3 scaffold_55 . repeat_region 136037 136287 . - . description=GypsyPi-1c_I-int scaffold_55 . repeat_region 136693 138946 . - . description=GypsyPi-1c_I-int scaffold_55 ensembl pseudogenic_tRNA 135260 135331 . + . ID=EPrPSOG00000000180;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_55 ensembl transcript 135260 135331 . + . ID=EPrPSOT00000000180;Parent=EPrPSOG00000000180;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_55 . exon 135260 135331 . + . ID=EPrPSOE00000000180;Parent=EPrPSOT00000000180;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 133709 133969 . + . ID=Physo118682;biotype=protein_coding;external_name=estExt_Genewise1.C_550082;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 133709 133969 . + . ID=Physo118682;Parent=Physo118682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 133709 133969 . + . ID=Physo118682.1;Parent=Physo118682;constitutive=1;ensembl_phase=-1;rank=1 scaffold_55 . CDS 133730 133969 . + 0 ID=Physo118682;Parent=Physo118682;rank=1 scaffold_55 ensembl protein_coding_gene 135410 141337 . - . ID=Physo137546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550037;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 135410 141337 . - . ID=Physo137546;Parent=Physo137546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 135410 136199 . - 0 ID=Physo137546;Parent=Physo137546;rank=9 scaffold_55 . exon 135410 136199 . - . ID=Physo137546.9;Parent=Physo137546;constitutive=1;ensembl_phase=2;rank=9 scaffold_55 . CDS 136349 137241 . - 0 ID=Physo137546;Parent=Physo137546;rank=8 scaffold_55 . exon 136349 137241 . - . ID=Physo137546.8;Parent=Physo137546;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_55 . CDS 137282 138220 . - 0 ID=Physo137546;Parent=Physo137546;rank=7 scaffold_55 . exon 137282 138220 . - . ID=Physo137546.7;Parent=Physo137546;constitutive=1;rank=7 scaffold_55 . CDS 138265 138723 . - 0 ID=Physo137546;Parent=Physo137546;rank=6 scaffold_55 . exon 138265 138723 . - . ID=Physo137546.6;Parent=Physo137546;constitutive=1;rank=6 scaffold_55 . CDS 138806 138874 . - 0 ID=Physo137546;Parent=Physo137546;rank=5 scaffold_55 . exon 138806 138874 . - . ID=Physo137546.5;Parent=Physo137546;constitutive=1;rank=5 scaffold_55 . CDS 138927 139106 . - 0 ID=Physo137546;Parent=Physo137546;rank=4 scaffold_55 . exon 138927 139106 . - . ID=Physo137546.4;Parent=Physo137546;constitutive=1;rank=4 scaffold_55 . CDS 139157 139444 . - 0 ID=Physo137546;Parent=Physo137546;rank=3 scaffold_55 . CDS 139840 140135 . - 0 ID=Physo137546;Parent=Physo137546;rank=2 scaffold_55 . CDS 140464 141337 . - 0 ID=Physo137546;Parent=Physo137546;rank=1 scaffold_55 . biological_region 139433 139436 0.999 + . logic_name=eponine scaffold_55 . repeat_region 139537 139615 . ? . description=trf scaffold_55 . biological_region 140130 140132 0.999 + . logic_name=eponine scaffold_55 . biological_region 140284 140287 0.999 + . logic_name=eponine scaffold_55 . biological_region 140310 140312 0.999 - . logic_name=eponine scaffold_55 . biological_region 140505 140506 0.999 + . logic_name=eponine scaffold_55 . biological_region 140575 140580 0.999 + . logic_name=eponine scaffold_55 . repeat_region 142376 142421 . ? . description=trf scaffold_55 . biological_region 146077 146081 0.999 - . logic_name=eponine scaffold_55 . biological_region 146781 146783 0.999 - . logic_name=eponine scaffold_55 . biological_region 146868 146868 0.999 + . logic_name=eponine scaffold_55 . biological_region 146933 146933 0.999 - . logic_name=eponine scaffold_55 . repeat_region 148948 148992 . ? . description=trf scaffold_55 . exon 139157 139444 . - . ID=Physo137546.3;Parent=Physo137546;constitutive=1;rank=3 scaffold_55 . exon 139840 140135 . - . ID=Physo137546.2;Parent=Physo137546;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . exon 140464 141337 . - . ID=Physo137546.1;Parent=Physo137546;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 146383 147756 . + . ID=Physo137547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550038;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 146383 147756 . + . ID=Physo137547;Parent=Physo137547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 146383 147238 . + 0 ID=Physo137547;Parent=Physo137547;rank=1 scaffold_55 . exon 146383 147238 . + . ID=Physo137547.1;Parent=Physo137547;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 147449 147756 . + 0 ID=Physo137547;Parent=Physo137547;rank=2 scaffold_55 . exon 147449 147756 . + . ID=Physo137547.2;Parent=Physo137547;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . repeat_region 151214 151223 . ? . description=dust scaffold_55 ensembl protein_coding_gene 156552 157110 . - . ID=Physo137548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550039;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 156552 157110 . - . ID=Physo137548;Parent=Physo137548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 156552 156936 . - 0 ID=Physo137548;Parent=Physo137548;rank=2 scaffold_55 . exon 156552 156936 . - . ID=Physo137548.2;Parent=Physo137548;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . CDS 156965 157110 . - 0 ID=Physo137548;Parent=Physo137548;rank=1 scaffold_55 . exon 156965 157110 . - . ID=Physo137548.1;Parent=Physo137548;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . biological_region 159754 159759 0.999 - . logic_name=eponine scaffold_55 . biological_region 160017 160018 0.999 - . logic_name=eponine scaffold_55 . biological_region 160036 160042 0.999 - . logic_name=eponine scaffold_55 . biological_region 160069 160075 0.999 + . logic_name=eponine scaffold_55 . biological_region 160233 160238 0.999 - . logic_name=eponine scaffold_55 . biological_region 160505 160505 0.999 + . logic_name=eponine scaffold_55 . biological_region 160759 160761 0.999 + . logic_name=eponine scaffold_55 . biological_region 161012 161013 0.999 + . logic_name=eponine scaffold_55 . biological_region 163713 163713 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 160223 161382 . + . ID=Physo109054;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550007;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 160223 161382 . + . ID=Physo109054;Parent=Physo109054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 160223 161382 . + . ID=Physo109054.1;Parent=Physo109054;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_55 . CDS 160269 161276 . + 0 ID=Physo109054;Parent=Physo109054;rank=1 scaffold_55 ensembl protein_coding_gene 162996 164234 . + . ID=Physo137550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550041;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 162996 164234 . + . ID=Physo137550;Parent=Physo137550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 162996 164234 . + 0 ID=Physo137550;Parent=Physo137550;rank=1 scaffold_55 . exon 162996 164234 . + . ID=Physo137550.1;Parent=Physo137550;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 165611 168185 . - . ID=Physo137551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550042;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 165611 168185 . - . ID=Physo137551;Parent=Physo137551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 165611 165620 . - 0 ID=Physo137551;Parent=Physo137551;rank=6 scaffold_55 . exon 165611 165620 . - . ID=Physo137551.6;Parent=Physo137551;constitutive=1;ensembl_phase=2;rank=6 scaffold_55 . CDS 165641 166371 . - 0 ID=Physo137551;Parent=Physo137551;rank=5 scaffold_55 . exon 165641 166371 . - . ID=Physo137551.5;Parent=Physo137551;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_55 . CDS 166698 166704 . - 0 ID=Physo137551;Parent=Physo137551;rank=4 scaffold_55 . exon 166698 166704 . - . ID=Physo137551.4;Parent=Physo137551;constitutive=1;ensembl_phase=2;rank=4 scaffold_55 . CDS 166967 167313 . - 0 ID=Physo137551;Parent=Physo137551;rank=3 scaffold_55 . exon 166967 167313 . - . ID=Physo137551.3;Parent=Physo137551;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_55 . CDS 167397 167960 . - 0 ID=Physo137551;Parent=Physo137551;rank=2 scaffold_55 . exon 167397 167960 . - . ID=Physo137551.2;Parent=Physo137551;constitutive=1;rank=2 scaffold_55 . CDS 167994 168185 . - 0 ID=Physo137551;Parent=Physo137551;rank=1 scaffold_55 . exon 167994 168185 . - . ID=Physo137551.1;Parent=Physo137551;constitutive=1;rank=1 scaffold_55 . repeat_region 168449 173945 . ? . description=dust scaffold_55 . repeat_region 175106 175164 . ? . description=dust scaffold_55 . repeat_region 175949 177092 . ? . description=dust scaffold_55 ensembl protein_coding_gene 178394 179623 . - . ID=Physo137552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550043;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 178394 179623 . - . ID=Physo137552;Parent=Physo137552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 178394 179623 . - 0 ID=Physo137552;Parent=Physo137552;rank=1 scaffold_55 . exon 178394 179623 . - . ID=Physo137552.1;Parent=Physo137552;constitutive=1;rank=1 scaffold_55 . biological_region 178905 178909 0.999 + . logic_name=eponine scaffold_55 . biological_region 179289 179294 0.999 - . logic_name=eponine scaffold_55 . biological_region 179522 179522 0.999 + . logic_name=eponine scaffold_55 . biological_region 181310 181311 0.999 + . logic_name=eponine scaffold_55 . biological_region 182193 182196 0.999 + . logic_name=eponine scaffold_55 . biological_region 182219 182226 0.999 - . logic_name=eponine scaffold_55 . repeat_region 186799 186833 . ? . description=trf scaffold_55 ensembl protein_coding_gene 181502 183990 . + . ID=Physo137553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550044;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 181502 183990 . + . ID=Physo137553;Parent=Physo137553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 181502 181516 . + 0 ID=Physo137553;Parent=Physo137553;rank=1 scaffold_55 . exon 181502 181516 . + . ID=Physo137553.1;Parent=Physo137553;constitutive=1;rank=1 scaffold_55 . CDS 181550 182541 . + 0 ID=Physo137553;Parent=Physo137553;rank=2 scaffold_55 . exon 181550 182541 . + . ID=Physo137553.2;Parent=Physo137553;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_55 . CDS 182716 182983 . + 0 ID=Physo137553;Parent=Physo137553;rank=3 scaffold_55 . exon 182716 182983 . + . ID=Physo137553.3;Parent=Physo137553;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 . CDS 183251 183873 . + 0 ID=Physo137553;Parent=Physo137553;rank=4 scaffold_55 . exon 183251 183873 . + . ID=Physo137553.4;Parent=Physo137553;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_55 . CDS 183975 183990 . + 0 ID=Physo137553;Parent=Physo137553;rank=5 scaffold_55 . exon 183975 183990 . + . ID=Physo137553.5;Parent=Physo137553;constitutive=1;ensembl_phase=2;rank=5 scaffold_55 . repeat_region 189597 189611 . ? . description=dust scaffold_55 . repeat_region 192268 192276 . ? . description=dust scaffold_55 . repeat_region 196734 196751 . ? . description=dust scaffold_55 . repeat_region 198489 198497 . ? . description=dust scaffold_55 ensembl protein_coding_gene 191209 192072 . + . ID=Physo137554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550045;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 191209 192072 . + . ID=Physo137554;Parent=Physo137554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 191209 191646 . + 0 ID=Physo137554;Parent=Physo137554;rank=1 scaffold_55 . exon 191209 191646 . + . ID=Physo137554.1;Parent=Physo137554;constitutive=1;rank=1 scaffold_55 . CDS 191986 192072 . + 0 ID=Physo137554;Parent=Physo137554;rank=2 scaffold_55 . exon 191986 192072 . + . ID=Physo137554.2;Parent=Physo137554;constitutive=1;rank=2 scaffold_55 . repeat_region 205010 205084 . ? . description=trf scaffold_55 . repeat_region 205027 205105 . ? . description=trf scaffold_55 . biological_region 208497 208501 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 199974 200645 . - . ID=Physo137555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550046;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 199974 200645 . - . ID=Physo137555;Parent=Physo137555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 199974 200645 . - 0 ID=Physo137555;Parent=Physo137555;rank=1 scaffold_55 . exon 199974 200645 . - . ID=Physo137555.1;Parent=Physo137555;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 201108 202312 . + . ID=Physo137556;biotype=protein_coding;description=PsAvh143 [Source:UniProtKB/TrEMBL%3BAcc:E0W5A1];external_name=estExt_fgenesh1_pg.C_550047;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 201108 202312 . + . ID=Physo137556;Parent=Physo137556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 201108 201484 . + 0 ID=Physo137556;Parent=Physo137556;rank=1 scaffold_55 . exon 201108 201484 . + . ID=Physo137556.1;Parent=Physo137556;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 201511 202312 . + 0 ID=Physo137556;Parent=Physo137556;rank=2 scaffold_55 . exon 201511 202312 . + . ID=Physo137556.2;Parent=Physo137556;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 ensembl protein_coding_gene 206456 209379 . - . ID=Physo137557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550048;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 206456 209379 . - . ID=Physo137557;Parent=Physo137557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 206456 208039 . - 0 ID=Physo137557;Parent=Physo137557;rank=3 scaffold_55 . exon 206456 208039 . - . ID=Physo137557.3;Parent=Physo137557;constitutive=1;rank=3 scaffold_55 . CDS 208417 208963 . - 0 ID=Physo137557;Parent=Physo137557;rank=2 scaffold_55 . exon 208417 208963 . - . ID=Physo137557.2;Parent=Physo137557;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . CDS 209186 209379 . - 0 ID=Physo137557;Parent=Physo137557;rank=1 scaffold_55 . repeat_region 212905 212912 . ? . description=dust scaffold_55 . repeat_region 216386 216393 . ? . description=dust scaffold_55 ensembl protein_coding_gene 211164 212834 . - . ID=Physo109055;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550008;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 211164 212834 . - . ID=Physo109055;Parent=Physo109055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 211164 212834 . - 0 ID=Physo109055;Parent=Physo109055;rank=1 scaffold_55 . exon 211164 212834 . - . ID=Physo109055.1;Parent=Physo109055;constitutive=1;rank=1 scaffold_55 . exon 209186 209379 . - . ID=Physo137557.1;Parent=Physo137557;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 ensembl protein_coding_gene 218301 219431 . + . ID=Physo137559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550050;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 218301 219431 . + . ID=Physo137559;Parent=Physo137559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 218301 219431 . + 0 ID=Physo137559;Parent=Physo137559;rank=1 scaffold_55 . exon 218301 219431 . + . ID=Physo137559.1;Parent=Physo137559;constitutive=1;rank=1 scaffold_55 . biological_region 223418 223419 0.999 + . logic_name=eponine scaffold_55 . biological_region 225330 225332 0.999 + . logic_name=eponine scaffold_55 . biological_region 225362 225364 0.999 + . logic_name=eponine scaffold_55 . biological_region 225811 225812 0.999 + . logic_name=eponine scaffold_55 . biological_region 227051 227056 0.999 - . logic_name=eponine scaffold_55 . biological_region 227752 227752 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 222571 224139 . - . ID=Physo137560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550051;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 222571 224139 . - . ID=Physo137560;Parent=Physo137560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 222571 224139 . - . ID=Physo137560.1;Parent=Physo137560;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_55 . CDS 222615 224117 . - 0 ID=Physo137560;Parent=Physo137560;rank=1 scaffold_55 ensembl protein_coding_gene 225159 226290 . + . ID=Physo137561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550052;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 225159 226290 . + . ID=Physo137561;Parent=Physo137561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 225159 226175 . + 0 ID=Physo137561;Parent=Physo137561;rank=1 scaffold_55 . exon 225159 226290 . + . ID=Physo137561.1;Parent=Physo137561;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_55 ensembl protein_coding_gene 226679 227715 . - . ID=Physo137562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550053;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 226679 227715 . - . ID=Physo137562;Parent=Physo137562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 226679 227194 . - 0 ID=Physo137562;Parent=Physo137562;rank=2 scaffold_55 . exon 226679 227194 . - . ID=Physo137562.2;Parent=Physo137562;constitutive=1;rank=2 scaffold_55 . CDS 227267 227320 . - 0 ID=Physo137562;Parent=Physo137562;rank=1 scaffold_55 . exon 227267 227715 . - . ID=Physo137562.1;Parent=Physo137562;constitutive=1;ensembl_phase=-1;rank=1 scaffold_55 ensembl protein_coding_gene 228115 229296 . + . ID=Physo137563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550054;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 228115 229296 . + . ID=Physo137563;Parent=Physo137563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 228115 228519 . + . ID=Physo137563.1;Parent=Physo137563;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_55 . CDS 228140 228519 . + 0 ID=Physo137563;Parent=Physo137563;rank=1 scaffold_55 . CDS 228624 228725 . + 0 ID=Physo137563;Parent=Physo137563;rank=2 scaffold_55 . CDS 228796 228859 . + 0 ID=Physo137563;Parent=Physo137563;rank=3 scaffold_55 . CDS 228955 228986 . + 0 ID=Physo137563;Parent=Physo137563;rank=4 scaffold_55 . CDS 229058 229146 . + 0 ID=Physo137563;Parent=Physo137563;rank=5 scaffold_55 . CDS 229223 229296 . + 0 ID=Physo137563;Parent=Physo137563;rank=6 scaffold_55 . repeat_region 234676 234683 . ? . description=dust scaffold_55 . repeat_region 237023 237112 . ? . description=dust scaffold_55 . repeat_region 237045 237068 . ? . description=trf scaffold_55 ensembl protein_coding_gene 232015 232697 . + . ID=Physo109056;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550009;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 232015 232697 . + . ID=Physo109056;Parent=Physo109056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 232015 232125 . + 0 ID=Physo109056;Parent=Physo109056;rank=1 scaffold_55 . exon 232015 232125 . + . ID=Physo109056.1;Parent=Physo109056;constitutive=1;rank=1 scaffold_55 . CDS 232212 232697 . + 0 ID=Physo109056;Parent=Physo109056;rank=2 scaffold_55 . exon 232212 232697 . + . ID=Physo109056.2;Parent=Physo109056;constitutive=1;rank=2 scaffold_55 . exon 228624 228725 . + . ID=Physo137563.2;Parent=Physo137563;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_55 . exon 228796 228859 . + . ID=Physo137563.3;Parent=Physo137563;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 . exon 228955 228986 . + . ID=Physo137563.4;Parent=Physo137563;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_55 . exon 229058 229146 . + . ID=Physo137563.5;Parent=Physo137563;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_55 . exon 229223 229296 . + . ID=Physo137563.6;Parent=Physo137563;constitutive=1;ensembl_phase=1;rank=6 scaffold_55 ensembl protein_coding_gene 229661 231758 . - . ID=Physo137564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550055;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 229661 231758 . - . ID=Physo137564;Parent=Physo137564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 229661 229889 . - 0 ID=Physo137564;Parent=Physo137564;rank=10 scaffold_55 . exon 229661 229889 . - . ID=Physo137564.10;Parent=Physo137564;constitutive=1;ensembl_phase=2;rank=10 scaffold_55 . CDS 229971 230093 . - 0 ID=Physo137564;Parent=Physo137564;rank=9 scaffold_55 . exon 229971 230093 . - . ID=Physo137564.9;Parent=Physo137564;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_55 . CDS 230180 230343 . - 0 ID=Physo137564;Parent=Physo137564;rank=8 scaffold_55 . exon 230180 230343 . - . ID=Physo137564.8;Parent=Physo137564;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_55 . CDS 230426 230569 . - 0 ID=Physo137564;Parent=Physo137564;rank=7 scaffold_55 . exon 230426 230569 . - . ID=Physo137564.7;Parent=Physo137564;constitutive=1;rank=7 scaffold_55 . CDS 230635 230686 . - 0 ID=Physo137564;Parent=Physo137564;rank=6 scaffold_55 . exon 230635 230686 . - . ID=Physo137564.6;Parent=Physo137564;constitutive=1;ensembl_phase=2;rank=6 scaffold_55 . CDS 230762 230956 . - 0 ID=Physo137564;Parent=Physo137564;rank=5 scaffold_55 . exon 230762 230956 . - . ID=Physo137564.5;Parent=Physo137564;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_55 . CDS 231033 231174 . - 0 ID=Physo137564;Parent=Physo137564;rank=4 scaffold_55 . exon 231033 231174 . - . ID=Physo137564.4;Parent=Physo137564;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_55 . CDS 231259 231363 . - 0 ID=Physo137564;Parent=Physo137564;rank=3 scaffold_55 . exon 231259 231363 . - . ID=Physo137564.3;Parent=Physo137564;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 231432 231550 . - 0 ID=Physo137564;Parent=Physo137564;rank=2 scaffold_55 . exon 231432 231550 . - . ID=Physo137564.2;Parent=Physo137564;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_55 . CDS 231640 231758 . - 0 ID=Physo137564;Parent=Physo137564;rank=1 scaffold_55 . exon 231640 231758 . - . ID=Physo137564.1;Parent=Physo137564;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 ensembl protein_coding_gene 236766 238865 . + . ID=Physo137566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550057;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 236766 238865 . + . ID=Physo137566;Parent=Physo137566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 236766 237757 . + 0 ID=Physo137566;Parent=Physo137566;rank=1 scaffold_55 . exon 236766 237757 . + . ID=Physo137566.1;Parent=Physo137566;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 237830 238865 . + 0 ID=Physo137566;Parent=Physo137566;rank=2 scaffold_55 . exon 237830 238865 . + . ID=Physo137566.2;Parent=Physo137566;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . biological_region 244864 244868 0.999 - . logic_name=eponine scaffold_55 . biological_region 244881 244884 0.999 - . logic_name=eponine scaffold_55 . biological_region 246496 246498 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 242428 244125 . + . ID=Physo137567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550058;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 242428 244125 . + . ID=Physo137567;Parent=Physo137567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 242428 242540 . + 0 ID=Physo137567;Parent=Physo137567;rank=1 scaffold_55 . exon 242428 242540 . + . ID=Physo137567.1;Parent=Physo137567;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 242604 242738 . + 0 ID=Physo137567;Parent=Physo137567;rank=2 scaffold_55 . exon 242604 242738 . + . ID=Physo137567.2;Parent=Physo137567;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_55 . CDS 242805 244125 . + 0 ID=Physo137567;Parent=Physo137567;rank=3 scaffold_55 . exon 242805 244125 . + . ID=Physo137567.3;Parent=Physo137567;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 ensembl protein_coding_gene 244799 246527 . + . ID=Physo137568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550059;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 244799 246527 . + . ID=Physo137568;Parent=Physo137568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 244799 244911 . + 0 ID=Physo137568;Parent=Physo137568;rank=1 scaffold_55 . exon 244799 244911 . + . ID=Physo137568.1;Parent=Physo137568;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 244980 245114 . + 0 ID=Physo137568;Parent=Physo137568;rank=2 scaffold_55 . exon 244980 245114 . + . ID=Physo137568.2;Parent=Physo137568;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_55 . CDS 245183 246527 . + 0 ID=Physo137568;Parent=Physo137568;rank=3 scaffold_55 . exon 245183 246527 . + . ID=Physo137568.3;Parent=Physo137568;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 ensembl protein_coding_gene 246823 248491 . + . ID=Physo137569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550060;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 246823 248491 . + . ID=Physo137569;Parent=Physo137569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 246823 246935 . + 0 ID=Physo137569;Parent=Physo137569;rank=1 scaffold_55 . exon 246823 246935 . + . ID=Physo137569.1;Parent=Physo137569;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 246999 247133 . + 0 ID=Physo137569;Parent=Physo137569;rank=2 scaffold_55 . exon 246999 247133 . + . ID=Physo137569.2;Parent=Physo137569;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_55 . CDS 247192 248491 . + 0 ID=Physo137569;Parent=Physo137569;rank=3 scaffold_55 . exon 247192 248491 . + . ID=Physo137569.3;Parent=Physo137569;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 . repeat_region 252753 252792 . ? . description=dust scaffold_55 . repeat_region 252816 252866 . ? . description=trf scaffold_55 . repeat_region 254691 254701 . ? . description=dust scaffold_55 . repeat_region 257685 257704 . ? . description=dust scaffold_55 . repeat_region 257790 257827 . ? . description=dust scaffold_55 ensembl protein_coding_gene 249154 249854 . + . ID=Physo137570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550061;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 249154 249854 . + . ID=Physo137570;Parent=Physo137570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 249154 249304 . + 0 ID=Physo137570;Parent=Physo137570;rank=1 scaffold_55 . exon 249154 249304 . + . ID=Physo137570.1;Parent=Physo137570;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 249398 249661 . + 0 ID=Physo137570;Parent=Physo137570;rank=2 scaffold_55 . exon 249398 249661 . + . ID=Physo137570.2;Parent=Physo137570;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 249754 249854 . + 0 ID=Physo137570;Parent=Physo137570;rank=3 scaffold_55 . exon 249754 249854 . + . ID=Physo137570.3;Parent=Physo137570;constitutive=1;ensembl_phase=1;rank=3 scaffold_55 ensembl protein_coding_gene 250005 253116 . - . ID=Physo137571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550062;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 250005 253116 . - . ID=Physo137571;Parent=Physo137571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 250005 250361 . - 0 ID=Physo137571;Parent=Physo137571;rank=5 scaffold_55 . exon 250005 250361 . - . ID=Physo137571.5;Parent=Physo137571;constitutive=1;rank=5 scaffold_55 . CDS 250422 251198 . - 0 ID=Physo137571;Parent=Physo137571;rank=4 scaffold_55 . exon 250422 251198 . - . ID=Physo137571.4;Parent=Physo137571;constitutive=1;rank=4 scaffold_55 . CDS 251290 252444 . - 0 ID=Physo137571;Parent=Physo137571;rank=3 scaffold_55 . exon 251290 252444 . - . ID=Physo137571.3;Parent=Physo137571;constitutive=1;rank=3 scaffold_55 . CDS 252518 252960 . - 0 ID=Physo137571;Parent=Physo137571;rank=2 scaffold_55 . exon 252518 252960 . - . ID=Physo137571.2;Parent=Physo137571;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 253050 253116 . - 0 ID=Physo137571;Parent=Physo137571;rank=1 scaffold_55 . exon 253050 253116 . - . ID=Physo137571.1;Parent=Physo137571;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 254450 255617 . - . ID=Physo137572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550063;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 254450 255617 . - . ID=Physo137572;Parent=Physo137572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 254450 254656 . - 0 ID=Physo137572;Parent=Physo137572;rank=4 scaffold_55 . exon 254450 254656 . - . ID=Physo137572.4;Parent=Physo137572;constitutive=1;rank=4 scaffold_55 . CDS 254950 255164 . - 0 ID=Physo137572;Parent=Physo137572;rank=3 scaffold_55 . exon 254950 255164 . - . ID=Physo137572.3;Parent=Physo137572;constitutive=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 255412 255466 . - 0 ID=Physo137572;Parent=Physo137572;rank=2 scaffold_55 . exon 255412 255466 . - . ID=Physo137572.2;Parent=Physo137572;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_55 . CDS 255507 255617 . - 0 ID=Physo137572;Parent=Physo137572;rank=1 scaffold_55 . exon 255507 255617 . - . ID=Physo137572.1;Parent=Physo137572;constitutive=1;rank=1 scaffold_55 . repeat_region 260023 260080 . + . description=(TACTG)n scaffold_55 . biological_region 266526 266527 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 267689 269107 . - . ID=Physo137573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550064;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 267689 269107 . - . ID=Physo137573;Parent=Physo137573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 267689 269107 . - 0 ID=Physo137573;Parent=Physo137573;rank=1 scaffold_55 . exon 267689 269107 . - . ID=Physo137573.1;Parent=Physo137573;constitutive=1;rank=1 scaffold_55 . repeat_region 269220 269236 . ? . description=dust scaffold_55 . repeat_region 270447 270459 . ? . description=dust scaffold_55 . repeat_region 273578 273590 . ? . description=dust scaffold_55 ensembl protein_coding_gene 272621 273364 . - . ID=Physo137574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550065;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 272621 273364 . - . ID=Physo137574;Parent=Physo137574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 272621 273364 . - 0 ID=Physo137574;Parent=Physo137574;rank=1 scaffold_55 . exon 272621 273364 . - . ID=Physo137574.1;Parent=Physo137574;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 274428 275533 . + . ID=Physo157634;biotype=protein_coding;external_name=C_scaffold_55000018;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 274428 275533 . + . ID=Physo157634;Parent=Physo157634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 274428 274743 . + 0 ID=Physo157634;Parent=Physo157634;rank=1 scaffold_55 . exon 274428 274743 . + . ID=Physo157634.1;Parent=Physo157634;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 274804 275020 . + 0 ID=Physo157634;Parent=Physo157634;rank=2 scaffold_55 . exon 274804 275020 . + . ID=Physo157634.2;Parent=Physo157634;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_55 . CDS 275063 275490 . + 0 ID=Physo157634;Parent=Physo157634;rank=3 scaffold_55 . exon 275063 275490 . + . ID=Physo157634.3;Parent=Physo157634;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_55 . CDS 275517 275533 . + 0 ID=Physo157634;Parent=Physo157634;rank=4 scaffold_55 . exon 275517 275533 . + . ID=Physo157634.4;Parent=Physo157634;constitutive=1;ensembl_phase=1;rank=4 scaffold_55 ensembl protein_coding_gene 275901 276826 . - . ID=Physo157637;biotype=protein_coding;external_name=C_scaffold_55000021;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 275901 276826 . - . ID=Physo157637;Parent=Physo157637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 275901 276027 . - 0 ID=Physo157637;Parent=Physo157637;rank=6 scaffold_55 . exon 275901 276027 . - . ID=Physo157637.6;Parent=Physo157637;constitutive=1;ensembl_phase=2;rank=6 scaffold_55 . CDS 276185 276303 . - 0 ID=Physo157637;Parent=Physo157637;rank=5 scaffold_55 . exon 276185 276303 . - . ID=Physo157637.5;Parent=Physo157637;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_55 . CDS 276369 276467 . - 0 ID=Physo157637;Parent=Physo157637;rank=4 scaffold_55 . exon 276369 276467 . - . ID=Physo157637.4;Parent=Physo157637;constitutive=1;rank=4 scaffold_55 . CDS 276518 276604 . - 0 ID=Physo157637;Parent=Physo157637;rank=3 scaffold_55 . exon 276518 276604 . - . ID=Physo157637.3;Parent=Physo157637;constitutive=1;rank=3 scaffold_55 . CDS 276675 276749 . - 0 ID=Physo157637;Parent=Physo157637;rank=2 scaffold_55 . exon 276675 276749 . - . ID=Physo157637.2;Parent=Physo157637;constitutive=1;rank=2 scaffold_55 . CDS 276824 276826 . - 0 ID=Physo157637;Parent=Physo157637;rank=1 scaffold_55 . exon 276824 276826 . - . ID=Physo157637.1;Parent=Physo157637;constitutive=1;rank=1 scaffold_55 . biological_region 278531 278532 0.999 + . logic_name=eponine scaffold_55 . biological_region 280702 280709 0.999 - . logic_name=eponine scaffold_55 . biological_region 280718 280719 0.999 - . logic_name=eponine scaffold_55 . biological_region 280793 280795 0.999 - . logic_name=eponine scaffold_55 . repeat_region 281740 281787 . ? . description=trf scaffold_55 . repeat_region 281741 281779 . ? . description=trf scaffold_55 . biological_region 282147 282152 0.999 - . logic_name=eponine scaffold_55 . biological_region 282190 282196 0.999 - . logic_name=eponine scaffold_55 . biological_region 282201 282207 0.999 + . logic_name=eponine scaffold_55 . biological_region 282246 282252 0.999 + . logic_name=eponine scaffold_55 . biological_region 282248 282253 0.999 - . logic_name=eponine scaffold_55 . biological_region 282420 282428 0.999 - . logic_name=eponine scaffold_55 . biological_region 282668 282670 0.999 + . logic_name=eponine scaffold_55 . biological_region 282689 282692 0.999 + . logic_name=eponine scaffold_55 . biological_region 282791 282795 0.999 - . logic_name=eponine scaffold_55 . biological_region 283140 283144 0.999 - . logic_name=eponine scaffold_55 . biological_region 283620 283623 0.999 + . logic_name=eponine scaffold_55 . biological_region 283742 283747 0.999 - . logic_name=eponine scaffold_55 . biological_region 284395 284401 0.999 + . logic_name=eponine scaffold_55 . biological_region 284714 284715 0.999 - . logic_name=eponine scaffold_55 . biological_region 285120 285121 0.999 - . logic_name=eponine scaffold_55 . biological_region 285461 285465 0.999 - . logic_name=eponine scaffold_55 . biological_region 285494 285497 0.999 - . logic_name=eponine scaffold_55 . biological_region 287005 287005 0.999 - . logic_name=eponine scaffold_55 . biological_region 287650 287656 0.999 + . logic_name=eponine scaffold_55 . biological_region 287969 287971 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 285028 286729 . - . ID=Physo118601;biotype=protein_coding;external_name=estExt_Genewise1.C_550001;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 285028 286729 . - . ID=Physo118601;Parent=Physo118601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 285028 285931 . - . ID=Physo118601.2;Parent=Physo118601;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_55 . CDS 285676 285931 . - 0 ID=Physo118601;Parent=Physo118601;rank=2 scaffold_55 . CDS 285982 286655 . - 0 ID=Physo118601;Parent=Physo118601;rank=1 scaffold_55 . exon 285982 286729 . - . ID=Physo118601.1;Parent=Physo118601;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_55 ensembl protein_coding_gene 281788 283155 . + . ID=Physo137577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550068;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 281788 283155 . + . ID=Physo137577;Parent=Physo137577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 281788 282338 . + 0 ID=Physo137577;Parent=Physo137577;rank=1 scaffold_55 . exon 281788 282338 . + . ID=Physo137577.1;Parent=Physo137577;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 282396 283155 . + 0 ID=Physo137577;Parent=Physo137577;rank=2 scaffold_55 . exon 282396 283155 . + . ID=Physo137577.2;Parent=Physo137577;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 . repeat_region 288167 288216 . ? . description=dust scaffold_55 . repeat_region 292878 292927 . ? . description=dust scaffold_55 . repeat_region 293678 293810 . ? . description=dust scaffold_55 . biological_region 298296 298298 0.999 - . logic_name=eponine scaffold_55 . biological_region 298301 298304 0.999 + . logic_name=eponine scaffold_55 . biological_region 298320 298327 0.999 + . logic_name=eponine scaffold_55 . biological_region 298350 298354 0.999 + . logic_name=eponine scaffold_55 . repeat_region 299560 299591 . ? . description=trf scaffold_55 . repeat_region 299748 299782 . ? . description=trf scaffold_55 . repeat_region 303454 303477 . ? . description=trf scaffold_55 . biological_region 304255 304258 0.999 + . logic_name=eponine scaffold_55 . repeat_region 304359 304382 . ? . description=trf scaffold_55 . biological_region 304366 304373 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 304311 307426 . + . ID=Physo137579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550070;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 304311 307426 . + . ID=Physo137579;Parent=Physo137579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 304311 304719 . + 0 ID=Physo137579;Parent=Physo137579;rank=1 scaffold_55 . exon 304311 304719 . + . ID=Physo137579.1;Parent=Physo137579;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 304743 307426 . + 0 ID=Physo137579;Parent=Physo137579;rank=2 scaffold_55 . exon 304743 307426 . + . ID=Physo137579.2;Parent=Physo137579;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . repeat_region 314425 314554 . ? . description=dust scaffold_55 . repeat_region 314426 314559 . + . description=(TCTG)n scaffold_55 . repeat_region 317766 317775 . ? . description=dust scaffold_55 ensembl protein_coding_gene 309531 313526 . - . ID=Physo137580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550071;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 309531 313526 . - . ID=Physo137580;Parent=Physo137580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 309531 310721 . - 0 ID=Physo137580;Parent=Physo137580;rank=6 scaffold_55 . exon 309531 310721 . - . ID=Physo137580.6;Parent=Physo137580;constitutive=1;rank=6 scaffold_55 . CDS 310749 310957 . - 0 ID=Physo137580;Parent=Physo137580;rank=5 scaffold_55 . exon 310749 310957 . - . ID=Physo137580.5;Parent=Physo137580;constitutive=1;ensembl_phase=1;rank=5 scaffold_55 . CDS 311140 311557 . - 0 ID=Physo137580;Parent=Physo137580;rank=4 scaffold_55 . exon 311140 311557 . - . ID=Physo137580.4;Parent=Physo137580;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_55 . CDS 311890 312624 . - 0 ID=Physo137580;Parent=Physo137580;rank=3 scaffold_55 . exon 311890 312624 . - . ID=Physo137580.3;Parent=Physo137580;constitutive=1;rank=3 scaffold_55 . CDS 312679 312935 . - 0 ID=Physo137580;Parent=Physo137580;rank=2 scaffold_55 . exon 312679 312935 . - . ID=Physo137580.2;Parent=Physo137580;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 312971 313526 . - 0 ID=Physo137580;Parent=Physo137580;rank=1 scaffold_55 . exon 312971 313526 . - . ID=Physo137580.1;Parent=Physo137580;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 315300 319518 . - . ID=Physo137581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550072;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 315300 319518 . - . ID=Physo137581;Parent=Physo137581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 315300 315584 . - 0 ID=Physo137581;Parent=Physo137581;rank=9 scaffold_55 . exon 315300 315584 . - . ID=Physo137581.9;Parent=Physo137581;constitutive=1;rank=9 scaffold_55 . CDS 315631 316263 . - 0 ID=Physo137581;Parent=Physo137581;rank=8 scaffold_55 . exon 315631 316263 . - . ID=Physo137581.8;Parent=Physo137581;constitutive=1;rank=8 scaffold_55 . CDS 316375 316779 . - 0 ID=Physo137581;Parent=Physo137581;rank=7 scaffold_55 . exon 316375 316779 . - . ID=Physo137581.7;Parent=Physo137581;constitutive=1;rank=7 scaffold_55 . CDS 317263 317541 . - 0 ID=Physo137581;Parent=Physo137581;rank=6 scaffold_55 . exon 317263 317541 . - . ID=Physo137581.6;Parent=Physo137581;constitutive=1;rank=6 scaffold_55 . CDS 317569 317762 . - 0 ID=Physo137581;Parent=Physo137581;rank=5 scaffold_55 . exon 317569 317762 . - . ID=Physo137581.5;Parent=Physo137581;constitutive=1;ensembl_phase=1;rank=5 scaffold_55 . CDS 317803 318768 . - 0 ID=Physo137581;Parent=Physo137581;rank=4 scaffold_55 . exon 317803 318768 . - . ID=Physo137581.4;Parent=Physo137581;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_55 . CDS 318799 318947 . - 0 ID=Physo137581;Parent=Physo137581;rank=3 scaffold_55 . CDS 319090 319288 . - 0 ID=Physo137581;Parent=Physo137581;rank=2 scaffold_55 . CDS 319332 319518 . - 0 ID=Physo137581;Parent=Physo137581;rank=1 scaffold_55 . biological_region 327147 327149 0.999 - . logic_name=eponine scaffold_55 . biological_region 327160 327161 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 327769 331376 . + . ID=Physo109057;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550010;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 327769 331376 . + . ID=Physo109057;Parent=Physo109057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 327769 327987 . + 0 ID=Physo109057;Parent=Physo109057;rank=1 scaffold_55 . exon 327769 327987 . + . ID=Physo109057.1;Parent=Physo109057;constitutive=1;rank=1 scaffold_55 . CDS 328051 328143 . + 0 ID=Physo109057;Parent=Physo109057;rank=2 scaffold_55 . CDS 328218 328502 . + 0 ID=Physo109057;Parent=Physo109057;rank=3 scaffold_55 . CDS 328583 330649 . + 0 ID=Physo109057;Parent=Physo109057;rank=4 scaffold_55 . CDS 330735 330995 . + 0 ID=Physo109057;Parent=Physo109057;rank=5 scaffold_55 . CDS 331071 331376 . + 0 ID=Physo109057;Parent=Physo109057;rank=6 scaffold_55 . exon 318799 318947 . - . ID=Physo137581.3;Parent=Physo137581;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_55 . exon 319090 319288 . - . ID=Physo137581.2;Parent=Physo137581;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_55 . exon 319332 319518 . - . ID=Physo137581.1;Parent=Physo137581;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 323836 326955 . - . ID=Physo157638;biotype=protein_coding;external_name=C_scaffold_55000022;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 323836 326955 . - . ID=Physo157638;Parent=Physo157638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 323836 324120 . - 0 ID=Physo157638;Parent=Physo157638;rank=9 scaffold_55 . exon 323836 324120 . - . ID=Physo157638.9;Parent=Physo157638;constitutive=1;rank=9 scaffold_55 . CDS 324202 324765 . - 0 ID=Physo157638;Parent=Physo157638;rank=8 scaffold_55 . exon 324202 324765 . - . ID=Physo157638.8;Parent=Physo157638;constitutive=1;rank=8 scaffold_55 . CDS 324841 325021 . - 0 ID=Physo157638;Parent=Physo157638;rank=7 scaffold_55 . exon 324841 325021 . - . ID=Physo157638.7;Parent=Physo157638;constitutive=1;ensembl_phase=2;rank=7 scaffold_55 . CDS 325307 325349 . - 0 ID=Physo157638;Parent=Physo157638;rank=6 scaffold_55 . exon 325307 325349 . - . ID=Physo157638.6;Parent=Physo157638;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_55 . CDS 325413 325467 . - 0 ID=Physo157638;Parent=Physo157638;rank=5 scaffold_55 . exon 325413 325467 . - . ID=Physo157638.5;Parent=Physo157638;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_55 . CDS 325495 325560 . - 0 ID=Physo157638;Parent=Physo157638;rank=4 scaffold_55 . exon 325495 325560 . - . ID=Physo157638.4;Parent=Physo157638;constitutive=1;rank=4 scaffold_55 . CDS 325720 325949 . - 0 ID=Physo157638;Parent=Physo157638;rank=3 scaffold_55 . exon 325720 325949 . - . ID=Physo157638.3;Parent=Physo157638;constitutive=1;ensembl_phase=1;rank=3 scaffold_55 . CDS 325989 326510 . - 0 ID=Physo157638;Parent=Physo157638;rank=2 scaffold_55 . exon 325989 326510 . - . ID=Physo157638.2;Parent=Physo157638;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 326631 326955 . - 0 ID=Physo157638;Parent=Physo157638;rank=1 scaffold_55 . exon 326631 326955 . - . ID=Physo157638.1;Parent=Physo157638;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . repeat_region 331741 331817 . ? . description=dust scaffold_55 . repeat_region 331993 332043 . ? . description=dust scaffold_55 . repeat_region 331997 332043 . ? . description=trf scaffold_55 . repeat_region 332168 332256 . ? . description=dust scaffold_55 . repeat_region 335645 335652 . ? . description=dust scaffold_55 . exon 328051 328143 . + . ID=Physo109057.2;Parent=Physo109057;constitutive=1;rank=2 scaffold_55 . exon 328218 328502 . + . ID=Physo109057.3;Parent=Physo109057;constitutive=1;rank=3 scaffold_55 . exon 328583 330649 . + . ID=Physo109057.4;Parent=Physo109057;constitutive=1;rank=4 scaffold_55 . exon 330735 330995 . + . ID=Physo109057.5;Parent=Physo109057;constitutive=1;rank=5 scaffold_55 . exon 331071 331376 . + . ID=Physo109057.6;Parent=Physo109057;constitutive=1;rank=6 scaffold_55 ensembl protein_coding_gene 331648 333026 . + . ID=Physo137584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550075;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 331648 333026 . + . ID=Physo137584;Parent=Physo137584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 331648 332354 . + 0 ID=Physo137584;Parent=Physo137584;rank=1 scaffold_55 . exon 331648 332354 . + . ID=Physo137584.1;Parent=Physo137584;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 332525 332647 . + 0 ID=Physo137584;Parent=Physo137584;rank=2 scaffold_55 . exon 332525 332647 . + . ID=Physo137584.2;Parent=Physo137584;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_55 . CDS 332822 333026 . + 0 ID=Physo137584;Parent=Physo137584;rank=3 scaffold_55 . exon 332822 333026 . + . ID=Physo137584.3;Parent=Physo137584;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 ensembl protein_coding_gene 336089 336655 . + . ID=Physo137585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550076;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 336089 336655 . + . ID=Physo137585;Parent=Physo137585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 336089 336655 . + . ID=Physo137585.1;Parent=Physo137585;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_55 . CDS 336090 336557 . + 0 ID=Physo137585;Parent=Physo137585;rank=1 scaffold_55 . biological_region 338934 338936 0.999 + . logic_name=eponine scaffold_55 . biological_region 339510 339515 0.999 - . logic_name=eponine scaffold_55 . biological_region 339536 339540 0.999 + . logic_name=eponine scaffold_55 . biological_region 339589 339592 0.999 + . logic_name=eponine scaffold_55 . biological_region 340058 340058 0.999 + . logic_name=eponine scaffold_55 . biological_region 341498 341499 0.999 + . logic_name=eponine scaffold_55 . biological_region 342212 342215 0.999 - . logic_name=eponine scaffold_55 . biological_region 347316 347318 0.999 + . logic_name=eponine scaffold_55 . biological_region 347409 347415 0.999 - . logic_name=eponine scaffold_55 . biological_region 347492 347495 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 338945 339343 . - . ID=Physo137586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550077;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 338945 339343 . - . ID=Physo137586;Parent=Physo137586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 338945 339343 . - 0 ID=Physo137586;Parent=Physo137586;rank=1 scaffold_55 . exon 338945 339343 . - . ID=Physo137586.1;Parent=Physo137586;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 342154 343808 . + . ID=Physo137587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550078;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 342154 343808 . + . ID=Physo137587;Parent=Physo137587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 342154 342885 . + 0 ID=Physo137587;Parent=Physo137587;rank=1 scaffold_55 . exon 342154 342885 . + . ID=Physo137587.1;Parent=Physo137587;constitutive=1;rank=1 scaffold_55 . CDS 343052 343111 . + 0 ID=Physo137587;Parent=Physo137587;rank=2 scaffold_55 . exon 343052 343111 . + . ID=Physo137587.2;Parent=Physo137587;constitutive=1;rank=2 scaffold_55 . CDS 343191 343808 . + 0 ID=Physo137587;Parent=Physo137587;rank=3 scaffold_55 . exon 343191 343808 . + . ID=Physo137587.3;Parent=Physo137587;constitutive=1;rank=3 scaffold_55 ensembl protein_coding_gene 343953 346145 . + . ID=Physo137588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550079;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 343953 346145 . + . ID=Physo137588;Parent=Physo137588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 343953 344001 . + 0 ID=Physo137588;Parent=Physo137588;rank=1 scaffold_55 . exon 343953 344001 . + . ID=Physo137588.1;Parent=Physo137588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 344056 346145 . + 0 ID=Physo137588;Parent=Physo137588;rank=2 scaffold_55 . exon 344056 346145 . + . ID=Physo137588.2;Parent=Physo137588;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . repeat_region 351417 351451 . ? . description=trf scaffold_55 . repeat_region 352834 352856 . ? . description=dust scaffold_55 . repeat_region 353819 353842 . ? . description=trf scaffold_55 . repeat_region 357189 357237 . ? . description=dust scaffold_55 ensembl protein_coding_gene 357334 358954 . - . ID=Physo118611;biotype=protein_coding;external_name=estExt_Genewise1.C_550011;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 357334 358954 . - . ID=Physo118611;Parent=Physo118611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 357334 357365 . - 0 ID=Physo118611;Parent=Physo118611;rank=6 scaffold_55 . exon 357334 357365 . - . ID=Physo118611.6;Parent=Physo118611;constitutive=1;ensembl_phase=1;rank=6 scaffold_55 . CDS 357458 358230 . - 0 ID=Physo118611;Parent=Physo118611;rank=5 scaffold_55 . exon 357458 358230 . - . ID=Physo118611.5;Parent=Physo118611;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_55 . CDS 358301 358423 . - 0 ID=Physo118611;Parent=Physo118611;rank=4 scaffold_55 . CDS 358498 358609 . - 0 ID=Physo118611;Parent=Physo118611;rank=3 scaffold_55 . CDS 358678 358769 . - 0 ID=Physo118611;Parent=Physo118611;rank=2 scaffold_55 . CDS 358839 358954 . - 0 ID=Physo118611;Parent=Physo118611;rank=1 scaffold_55 ensembl protein_coding_gene 348437 348989 . + . ID=Physo137589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550080;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 348437 348989 . + . ID=Physo137589;Parent=Physo137589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 348437 348989 . + . ID=Physo137589.1;Parent=Physo137589;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_55 . CDS 348438 348905 . + 0 ID=Physo137589;Parent=Physo137589;rank=1 scaffold_55 ensembl protein_coding_gene 350201 351085 . + . ID=Physo137590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550081;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 350201 351085 . + . ID=Physo137590;Parent=Physo137590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 350201 350962 . + 0 ID=Physo137590;Parent=Physo137590;rank=1 scaffold_55 . exon 350201 351085 . + . ID=Physo137590.1;Parent=Physo137590;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_55 ensembl protein_coding_gene 352982 353762 . + . ID=Physo137591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550082;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 352982 353762 . + . ID=Physo137591;Parent=Physo137591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 352982 353557 . + 0 ID=Physo137591;Parent=Physo137591;rank=1 scaffold_55 . exon 352982 353762 . + . ID=Physo137591.1;Parent=Physo137591;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_55 ensembl protein_coding_gene 354680 356161 . + . ID=Physo137592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550083;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 354680 356161 . + . ID=Physo137592;Parent=Physo137592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 354680 354712 . + 0 ID=Physo137592;Parent=Physo137592;rank=1 scaffold_55 . exon 354680 354712 . + . ID=Physo137592.1;Parent=Physo137592;constitutive=1;rank=1 scaffold_55 . CDS 354774 354907 . + 0 ID=Physo137592;Parent=Physo137592;rank=2 scaffold_55 . exon 354774 354907 . + . ID=Physo137592.2;Parent=Physo137592;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_55 . CDS 354978 355176 . + 0 ID=Physo137592;Parent=Physo137592;rank=3 scaffold_55 . exon 354978 355176 . + . ID=Physo137592.3;Parent=Physo137592;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 . CDS 355357 355657 . + 0 ID=Physo137592;Parent=Physo137592;rank=4 scaffold_55 . exon 355357 355657 . + . ID=Physo137592.4;Parent=Physo137592;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_55 . CDS 355887 355964 . + 0 ID=Physo137592;Parent=Physo137592;rank=5 scaffold_55 . exon 355887 355964 . + . ID=Physo137592.5;Parent=Physo137592;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_55 . CDS 356091 356161 . + 0 ID=Physo137592;Parent=Physo137592;rank=6 scaffold_55 . exon 356091 356161 . + . ID=Physo137592.6;Parent=Physo137592;constitutive=1;ensembl_phase=1;rank=6 scaffold_55 . biological_region 357939 357942 0.999 - . logic_name=eponine scaffold_55 . biological_region 358953 358956 0.999 - . logic_name=eponine scaffold_55 . biological_region 364410 364411 0.999 - . logic_name=eponine scaffold_55 . biological_region 365109 365112 0.999 - . logic_name=eponine scaffold_55 . biological_region 365762 365762 0.999 + . logic_name=eponine scaffold_55 . exon 358301 358423 . - . ID=Physo118611.4;Parent=Physo118611;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_55 . exon 358498 358609 . - . ID=Physo118611.3;Parent=Physo118611;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_55 . exon 358678 358769 . - . ID=Physo118611.2;Parent=Physo118611;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_55 . exon 358839 358954 . - . ID=Physo118611.1;Parent=Physo118611;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 ensembl protein_coding_gene 363003 363989 . - . ID=Physo137594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550085;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 363003 363989 . - . ID=Physo137594;Parent=Physo137594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 363003 363989 . - 0 ID=Physo137594;Parent=Physo137594;rank=1 scaffold_55 . exon 363003 363989 . - . ID=Physo137594.1;Parent=Physo137594;constitutive=1;rank=1 scaffold_55 . repeat_region 373704 373714 . ? . description=dust scaffold_55 ensembl protein_coding_gene 370923 372221 . + . ID=Physo137595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550086;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 370923 372221 . + . ID=Physo137595;Parent=Physo137595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 370923 372221 . + 0 ID=Physo137595;Parent=Physo137595;rank=1 scaffold_55 . exon 370923 372221 . + . ID=Physo137595.1;Parent=Physo137595;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 375174 375776 . + . ID=Physo137596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550087;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 375174 375776 . + . ID=Physo137596;Parent=Physo137596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 375174 375776 . + 0 ID=Physo137596;Parent=Physo137596;rank=1 scaffold_55 . exon 375174 375776 . + . ID=Physo137596.1;Parent=Physo137596;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 376315 379848 . + . ID=Physo137597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550088;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 376315 379848 . + . ID=Physo137597;Parent=Physo137597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 376315 376555 . + . ID=Physo137597.1;Parent=Physo137597;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_55 . CDS 376405 376555 . + 0 ID=Physo137597;Parent=Physo137597;rank=1 scaffold_55 . CDS 376634 377228 . + 0 ID=Physo137597;Parent=Physo137597;rank=2 scaffold_55 . exon 376634 377228 . + . ID=Physo137597.2;Parent=Physo137597;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_55 . CDS 377514 377608 . + 0 ID=Physo137597;Parent=Physo137597;rank=3 scaffold_55 . exon 377514 377608 . + . ID=Physo137597.3;Parent=Physo137597;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_55 . CDS 377795 379848 . + 0 ID=Physo137597;Parent=Physo137597;rank=4 scaffold_55 . biological_region 380449 380451 0.999 + . logic_name=eponine scaffold_55 . biological_region 380474 380477 0.999 - . logic_name=eponine scaffold_55 . biological_region 381782 381788 0.999 - . logic_name=eponine scaffold_55 . biological_region 381806 381811 0.999 - . logic_name=eponine scaffold_55 . biological_region 382836 382844 0.999 + . logic_name=eponine scaffold_55 . biological_region 382955 382959 0.999 - . logic_name=eponine scaffold_55 . biological_region 383389 383392 0.999 - . logic_name=eponine scaffold_55 . repeat_region 386926 386955 . ? . description=trf scaffold_55 ensembl protein_coding_gene 380064 381766 . - . ID=Physo109059;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550012;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 380064 381766 . - . ID=Physo109059;Parent=Physo109059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 380064 381565 . - 0 ID=Physo109059;Parent=Physo109059;rank=2 scaffold_55 . exon 380064 381565 . - . ID=Physo109059.2;Parent=Physo109059;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 381667 381766 . - 0 ID=Physo109059;Parent=Physo109059;rank=1 scaffold_55 . exon 381667 381766 . - . ID=Physo109059.1;Parent=Physo109059;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . exon 377795 379848 . + . ID=Physo137597.4;Parent=Physo137597;constitutive=1;ensembl_phase=1;rank=4 scaffold_55 ensembl protein_coding_gene 382443 383063 . + . ID=Physo137599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550090;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 382443 383063 . + . ID=Physo137599;Parent=Physo137599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 382443 383063 . + 0 ID=Physo137599;Parent=Physo137599;rank=1 scaffold_55 . exon 382443 383063 . + . ID=Physo137599.1;Parent=Physo137599;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 385495 387211 . - . ID=Physo137600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550091;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 385495 387211 . - . ID=Physo137600;Parent=Physo137600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 385495 386020 . - . ID=Physo137600.3;Parent=Physo137600;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_55 . CDS 385574 386020 . - 0 ID=Physo137600;Parent=Physo137600;rank=3 scaffold_55 . CDS 386096 386440 . - 0 ID=Physo137600;Parent=Physo137600;rank=2 scaffold_55 . exon 386096 386440 . - . ID=Physo137600.2;Parent=Physo137600;constitutive=1;rank=2 scaffold_55 . CDS 386513 387211 . - 0 ID=Physo137600;Parent=Physo137600;rank=1 scaffold_55 . exon 386513 387211 . - . ID=Physo137600.1;Parent=Physo137600;constitutive=1;rank=1 scaffold_55 . repeat_region 387810 387834 . ? . description=dust scaffold_55 . repeat_region 388352 388360 . ? . description=dust scaffold_55 ensembl protein_coding_gene 395667 397395 . + . ID=Physo109060;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_550013;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 395667 397395 . + . ID=Physo109060;Parent=Physo109060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 395667 396390 . + . ID=Physo109060.1;Parent=Physo109060;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_55 . CDS 395687 396390 . + 0 ID=Physo109060;Parent=Physo109060;rank=1 scaffold_55 . CDS 396462 397395 . + 0 ID=Physo109060;Parent=Physo109060;rank=2 scaffold_55 . exon 396462 397395 . + . ID=Physo109060.2;Parent=Physo109060;constitutive=1;ensembl_phase=2;rank=2 scaffold_55 ensembl protein_coding_gene 392347 393940 . + . ID=Physo137603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550094;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 392347 393940 . + . ID=Physo137603;Parent=Physo137603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 392347 393021 . + 0 ID=Physo137603;Parent=Physo137603;rank=1 scaffold_55 . exon 392347 393021 . + . ID=Physo137603.1;Parent=Physo137603;constitutive=1;rank=1 scaffold_55 . CDS 393093 393437 . + 0 ID=Physo137603;Parent=Physo137603;rank=2 scaffold_55 . exon 393093 393437 . + . ID=Physo137603.2;Parent=Physo137603;constitutive=1;rank=2 scaffold_55 . CDS 393515 393940 . + 0 ID=Physo137603;Parent=Physo137603;rank=3 scaffold_55 . exon 393515 393940 . + . ID=Physo137603.3;Parent=Physo137603;constitutive=1;rank=3 scaffold_55 ensembl protein_coding_gene 394378 394950 . - . ID=Physo137604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550095;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 394378 394950 . - . ID=Physo137604;Parent=Physo137604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 394378 394950 . - 0 ID=Physo137604;Parent=Physo137604;rank=1 scaffold_55 . exon 394378 394950 . - . ID=Physo137604.1;Parent=Physo137604;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 388501 390822 . - . ID=Physo157644;biotype=protein_coding;external_name=C_scaffold_55000028;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 388501 390822 . - . ID=Physo157644;Parent=Physo157644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 388501 388512 . - 0 ID=Physo157644;Parent=Physo157644;rank=8 scaffold_55 . exon 388501 388512 . - . ID=Physo157644.8;Parent=Physo157644;constitutive=1;rank=8 scaffold_55 . CDS 388586 388939 . - 0 ID=Physo157644;Parent=Physo157644;rank=7 scaffold_55 . exon 388586 388939 . - . ID=Physo157644.7;Parent=Physo157644;constitutive=1;rank=7 scaffold_55 . CDS 389016 389360 . - 0 ID=Physo157644;Parent=Physo157644;rank=6 scaffold_55 . exon 389016 389360 . - . ID=Physo157644.6;Parent=Physo157644;constitutive=1;rank=6 scaffold_55 . CDS 389440 389622 . - 0 ID=Physo157644;Parent=Physo157644;rank=5 scaffold_55 . exon 389440 389622 . - . ID=Physo157644.5;Parent=Physo157644;constitutive=1;rank=5 scaffold_55 . CDS 389647 389770 . - 0 ID=Physo157644;Parent=Physo157644;rank=4 scaffold_55 . exon 389647 389770 . - . ID=Physo157644.4;Parent=Physo157644;constitutive=1;ensembl_phase=2;rank=4 scaffold_55 . CDS 389834 390123 . - 0 ID=Physo157644;Parent=Physo157644;rank=3 scaffold_55 . exon 389834 390123 . - . ID=Physo157644.3;Parent=Physo157644;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_55 . CDS 390332 390730 . - 0 ID=Physo157644;Parent=Physo157644;rank=2 scaffold_55 . exon 390332 390730 . - . ID=Physo157644.2;Parent=Physo157644;constitutive=1;rank=2 scaffold_55 . CDS 390817 390822 . - 0 ID=Physo157644;Parent=Physo157644;rank=1 scaffold_55 . exon 390817 390822 . - . ID=Physo157644.1;Parent=Physo157644;constitutive=1;rank=1 scaffold_55 . repeat_region 399514 399537 . ? . description=trf scaffold_55 . biological_region 400047 400054 0.999 + . logic_name=eponine scaffold_55 . biological_region 400138 400139 0.999 - . logic_name=eponine scaffold_55 . biological_region 400184 400189 0.999 - . logic_name=eponine scaffold_55 . biological_region 401144 401144 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 397960 399514 . - . ID=Physo137606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550097;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 397960 399514 . - . ID=Physo137606;Parent=Physo137606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 397960 397980 . - 0 ID=Physo137606;Parent=Physo137606;rank=4 scaffold_55 . exon 397960 397980 . - . ID=Physo137606.4;Parent=Physo137606;constitutive=1;rank=4 scaffold_55 . CDS 398007 398177 . - 0 ID=Physo137606;Parent=Physo137606;rank=3 scaffold_55 . exon 398007 398177 . - . ID=Physo137606.3;Parent=Physo137606;constitutive=1;rank=3 scaffold_55 . CDS 398237 399408 . - 0 ID=Physo137606;Parent=Physo137606;rank=2 scaffold_55 . exon 398237 399408 . - . ID=Physo137606.2;Parent=Physo137606;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 399487 399514 . - 0 ID=Physo137606;Parent=Physo137606;rank=1 scaffold_55 . exon 399487 399514 . - . ID=Physo137606.1;Parent=Physo137606;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 400352 402741 . + . ID=Physo137607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550098;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 400352 402741 . + . ID=Physo137607;Parent=Physo137607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 400352 401821 . + 0 ID=Physo137607;Parent=Physo137607;rank=1 scaffold_55 . exon 400352 401821 . + . ID=Physo137607.1;Parent=Physo137607;constitutive=1;rank=1 scaffold_55 . CDS 402061 402741 . + 0 ID=Physo137607;Parent=Physo137607;rank=2 scaffold_55 . exon 402061 402741 . + . ID=Physo137607.2;Parent=Physo137607;constitutive=1;rank=2 scaffold_55 ensembl protein_coding_gene 406038 407568 . + . ID=Physo137608;biotype=protein_coding;description=PsAvh164 [Source:UniProtKB/TrEMBL%3BAcc:E0W5A5];external_name=estExt_fgenesh1_pg.C_550099;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 406038 407568 . + . ID=Physo137608;Parent=Physo137608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 406038 407523 . + 0 ID=Physo137608;Parent=Physo137608;rank=1 scaffold_55 . exon 406038 407523 . + . ID=Physo137608.1;Parent=Physo137608;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 407549 407568 . + 0 ID=Physo137608;Parent=Physo137608;rank=2 scaffold_55 . repeat_region 413730 413737 . ? . description=dust scaffold_55 . exon 407549 407568 . + . ID=Physo137608.2;Parent=Physo137608;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 ensembl protein_coding_gene 411795 412412 . - . ID=Physo157647;biotype=protein_coding;external_name=C_scaffold_55000031;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 411795 412412 . - . ID=Physo157647;Parent=Physo157647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 411795 412412 . - 0 ID=Physo157647;Parent=Physo157647;rank=1 scaffold_55 . exon 411795 412412 . - . ID=Physo157647.1;Parent=Physo157647;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 412959 417969 . - . ID=Physo157648;biotype=protein_coding;external_name=C_scaffold_55000032;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 412959 417969 . - . ID=Physo157648;Parent=Physo157648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 412959 413216 . - 0 ID=Physo157648;Parent=Physo157648;rank=15 scaffold_55 . exon 412959 413216 . - . ID=Physo157648.15;Parent=Physo157648;constitutive=1;rank=15 scaffold_55 . CDS 413253 413390 . - 0 ID=Physo157648;Parent=Physo157648;rank=14 scaffold_55 . exon 413253 413390 . - . ID=Physo157648.14;Parent=Physo157648;constitutive=1;rank=14 scaffold_55 . CDS 413465 413677 . - 0 ID=Physo157648;Parent=Physo157648;rank=13 scaffold_55 . exon 413465 413677 . - . ID=Physo157648.13;Parent=Physo157648;constitutive=1;rank=13 scaffold_55 . CDS 413742 413987 . - 0 ID=Physo157648;Parent=Physo157648;rank=12 scaffold_55 . exon 413742 413987 . - . ID=Physo157648.12;Parent=Physo157648;constitutive=1;rank=12 scaffold_55 . CDS 414048 414922 . - 0 ID=Physo157648;Parent=Physo157648;rank=11 scaffold_55 . exon 414048 414922 . - . ID=Physo157648.11;Parent=Physo157648;constitutive=1;ensembl_phase=1;rank=11 scaffold_55 . CDS 415508 415745 . - 0 ID=Physo157648;Parent=Physo157648;rank=10 scaffold_55 . exon 415508 415745 . - . ID=Physo157648.10;Parent=Physo157648;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_55 . CDS 415822 415930 . - 0 ID=Physo157648;Parent=Physo157648;rank=9 scaffold_55 . exon 415822 415930 . - . ID=Physo157648.9;Parent=Physo157648;constitutive=1;ensembl_phase=2;rank=9 scaffold_55 . CDS 416007 416108 . - 0 ID=Physo157648;Parent=Physo157648;rank=8 scaffold_55 . exon 416007 416108 . - . ID=Physo157648.8;Parent=Physo157648;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_55 . CDS 416183 416261 . - 0 ID=Physo157648;Parent=Physo157648;rank=7 scaffold_55 . exon 416183 416261 . - . ID=Physo157648.7;Parent=Physo157648;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_55 . CDS 416478 416874 . - 0 ID=Physo157648;Parent=Physo157648;rank=6 scaffold_55 . exon 416478 416874 . - . ID=Physo157648.6;Parent=Physo157648;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_55 . CDS 416943 417074 . - 0 ID=Physo157648;Parent=Physo157648;rank=5 scaffold_55 . exon 416943 417074 . - . ID=Physo157648.5;Parent=Physo157648;constitutive=1;rank=5 scaffold_55 . CDS 417150 417245 . - 0 ID=Physo157648;Parent=Physo157648;rank=4 scaffold_55 . exon 417150 417245 . - . ID=Physo157648.4;Parent=Physo157648;constitutive=1;rank=4 scaffold_55 . CDS 417320 417394 . - 0 ID=Physo157648;Parent=Physo157648;rank=3 scaffold_55 . CDS 417461 417831 . - 0 ID=Physo157648;Parent=Physo157648;rank=2 scaffold_55 . CDS 417936 417969 . - 0 ID=Physo157648;Parent=Physo157648;rank=1 scaffold_55 . biological_region 418061 418061 0.999 - . logic_name=eponine scaffold_55 . biological_region 419474 419476 0.999 + . logic_name=eponine scaffold_55 . biological_region 422185 422186 0.999 - . logic_name=eponine scaffold_55 . biological_region 422547 422549 0.999 + . logic_name=eponine scaffold_55 . biological_region 423846 423852 0.999 + . logic_name=eponine scaffold_55 . biological_region 423952 423960 0.999 - . logic_name=eponine scaffold_55 . biological_region 423987 423987 0.999 - . logic_name=eponine scaffold_55 . biological_region 424348 424349 0.999 + . logic_name=eponine scaffold_55 . biological_region 424421 424432 0.999 + . logic_name=eponine scaffold_55 . biological_region 424456 424458 0.999 - . logic_name=eponine scaffold_55 . biological_region 424479 424486 0.999 + . logic_name=eponine scaffold_55 . biological_region 424529 424535 0.999 + . logic_name=eponine scaffold_55 . biological_region 424562 424568 0.999 - . logic_name=eponine scaffold_55 . biological_region 424585 424587 0.999 + . logic_name=eponine scaffold_55 . biological_region 424592 424598 0.999 - . logic_name=eponine scaffold_55 . biological_region 424661 424668 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 421841 423781 . - . ID=Physo118625;biotype=protein_coding;external_name=estExt_Genewise1.C_550025;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 421841 423781 . - . ID=Physo118625;Parent=Physo118625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . exon 421841 423438 . - . ID=Physo118625.2;Parent=Physo118625;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_55 . CDS 422441 423438 . - 0 ID=Physo118625;Parent=Physo118625;rank=2 scaffold_55 . CDS 423528 423738 . - 0 ID=Physo118625;Parent=Physo118625;rank=1 scaffold_55 . exon 423528 423781 . - . ID=Physo118625.1;Parent=Physo118625;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_55 ensembl protein_coding_gene 418181 419574 . + . ID=Physo137612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550103;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 418181 419574 . + . ID=Physo137612;Parent=Physo137612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 418181 418268 . + 0 ID=Physo137612;Parent=Physo137612;rank=1 scaffold_55 . exon 418181 418268 . + . ID=Physo137612.1;Parent=Physo137612;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 418345 418505 . + 0 ID=Physo137612;Parent=Physo137612;rank=2 scaffold_55 . exon 418345 418505 . + . ID=Physo137612.2;Parent=Physo137612;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 418592 418650 . + 0 ID=Physo137612;Parent=Physo137612;rank=3 scaffold_55 . exon 418592 418650 . + . ID=Physo137612.3;Parent=Physo137612;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_55 . CDS 418737 418945 . + 0 ID=Physo137612;Parent=Physo137612;rank=4 scaffold_55 . exon 418737 418945 . + . ID=Physo137612.4;Parent=Physo137612;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_55 . CDS 419013 419127 . + 0 ID=Physo137612;Parent=Physo137612;rank=5 scaffold_55 . exon 419013 419127 . + . ID=Physo137612.5;Parent=Physo137612;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_55 . CDS 419182 419366 . + 0 ID=Physo137612;Parent=Physo137612;rank=6 scaffold_55 . exon 419182 419366 . + . ID=Physo137612.6;Parent=Physo137612;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_55 . CDS 419441 419574 . + 0 ID=Physo137612;Parent=Physo137612;rank=7 scaffold_55 . exon 419441 419574 . + . ID=Physo137612.7;Parent=Physo137612;constitutive=1;ensembl_phase=1;rank=7 scaffold_55 . exon 417320 417394 . - . ID=Physo157648.3;Parent=Physo157648;constitutive=1;rank=3 scaffold_55 . exon 417461 417831 . - . ID=Physo157648.2;Parent=Physo157648;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . exon 417936 417969 . - . ID=Physo157648.1;Parent=Physo157648;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 ensembl protein_coding_gene 419733 420290 . + . ID=Physo157651;biotype=protein_coding;external_name=C_scaffold_55000035;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 419733 420290 . + . ID=Physo157651;Parent=Physo157651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 419733 419911 . + 0 ID=Physo157651;Parent=Physo157651;rank=1 scaffold_55 . exon 419733 419911 . + . ID=Physo157651.1;Parent=Physo157651;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_55 . CDS 419999 420091 . + 0 ID=Physo157651;Parent=Physo157651;rank=2 scaffold_55 . exon 419999 420091 . + . ID=Physo157651.2;Parent=Physo157651;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_55 . CDS 420167 420290 . + 0 ID=Physo157651;Parent=Physo157651;rank=3 scaffold_55 . exon 420167 420290 . + . ID=Physo157651.3;Parent=Physo157651;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 ensembl protein_coding_gene 420697 421781 . + . ID=Physo157654;biotype=protein_coding;external_name=C_scaffold_55000038;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 420697 421781 . + . ID=Physo157654;Parent=Physo157654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 420697 420762 . + 0 ID=Physo157654;Parent=Physo157654;rank=1 scaffold_55 . exon 420697 420762 . + . ID=Physo157654.1;Parent=Physo157654;constitutive=1;rank=1 scaffold_55 . CDS 420831 421106 . + 0 ID=Physo157654;Parent=Physo157654;rank=2 scaffold_55 . exon 420831 421106 . + . ID=Physo157654.2;Parent=Physo157654;constitutive=1;rank=2 scaffold_55 . CDS 421170 421262 . + 0 ID=Physo157654;Parent=Physo157654;rank=3 scaffold_55 . exon 421170 421262 . + . ID=Physo157654.3;Parent=Physo157654;constitutive=1;rank=3 scaffold_55 . CDS 421329 421781 . + 0 ID=Physo157654;Parent=Physo157654;rank=4 scaffold_55 . exon 421329 421781 . + . ID=Physo157654.4;Parent=Physo157654;constitutive=1;rank=4 scaffold_55 . repeat_region 427253 427260 . ? . description=dust scaffold_55 . repeat_region 430608 430627 . ? . description=trf scaffold_55 . repeat_region 432030 432039 . ? . description=dust scaffold_55 . repeat_region 432636 432666 . ? . description=trf scaffold_55 . repeat_region 432940 432963 . ? . description=trf scaffold_55 . repeat_region 433638 433688 . ? . description=dust scaffold_55 . repeat_region 434227 434261 . ? . description=dust scaffold_55 ensembl protein_coding_gene 432255 434351 . + . ID=Physo137618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550109;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 432255 434351 . + . ID=Physo137618;Parent=Physo137618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 432255 434351 . + 0 ID=Physo137618;Parent=Physo137618;rank=1 scaffold_55 . exon 432255 434351 . + . ID=Physo137618.1;Parent=Physo137618;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 434598 435914 . + . ID=Physo137619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550110;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 434598 435914 . + . ID=Physo137619;Parent=Physo137619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 434598 434918 . + 0 ID=Physo137619;Parent=Physo137619;rank=1 scaffold_55 . exon 434598 434918 . + . ID=Physo137619.1;Parent=Physo137619;constitutive=1;rank=1 scaffold_55 . CDS 435159 435317 . + 0 ID=Physo137619;Parent=Physo137619;rank=2 scaffold_55 . exon 435159 435317 . + . ID=Physo137619.2;Parent=Physo137619;constitutive=1;rank=2 scaffold_55 . CDS 435393 435500 . + 0 ID=Physo137619;Parent=Physo137619;rank=3 scaffold_55 . exon 435393 435500 . + . ID=Physo137619.3;Parent=Physo137619;constitutive=1;rank=3 scaffold_55 . CDS 435562 435759 . + 0 ID=Physo137619;Parent=Physo137619;rank=4 scaffold_55 . exon 435562 435759 . + . ID=Physo137619.4;Parent=Physo137619;constitutive=1;rank=4 scaffold_55 . CDS 435837 435914 . + 0 ID=Physo137619;Parent=Physo137619;rank=5 scaffold_55 . exon 435837 435914 . + . ID=Physo137619.5;Parent=Physo137619;constitutive=1;rank=5 scaffold_55 ensembl protein_coding_gene 428094 429131 . + . ID=Physo157656;biotype=protein_coding;external_name=C_scaffold_55000040;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 428094 429131 . + . ID=Physo157656;Parent=Physo157656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 428094 428184 . + 0 ID=Physo157656;Parent=Physo157656;rank=1 scaffold_55 . exon 428094 428184 . + . ID=Physo157656.1;Parent=Physo157656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 428254 428429 . + 0 ID=Physo157656;Parent=Physo157656;rank=2 scaffold_55 . exon 428254 428429 . + . ID=Physo157656.2;Parent=Physo157656;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 428519 428711 . + 0 ID=Physo157656;Parent=Physo157656;rank=3 scaffold_55 . exon 428519 428711 . + . ID=Physo157656.3;Parent=Physo157656;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_55 . CDS 428797 429131 . + 0 ID=Physo157656;Parent=Physo157656;rank=4 scaffold_55 . exon 428797 429131 . + . ID=Physo157656.4;Parent=Physo157656;constitutive=1;ensembl_phase=1;rank=4 scaffold_55 ensembl protein_coding_gene 429681 430541 . - . ID=Physo157657;biotype=protein_coding;external_name=C_scaffold_55000041;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 429681 430541 . - . ID=Physo157657;Parent=Physo157657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 429681 430541 . - 0 ID=Physo157657;Parent=Physo157657;rank=1 scaffold_55 . exon 429681 430541 . - . ID=Physo157657.1;Parent=Physo157657;constitutive=1;rank=1 scaffold_55 . biological_region 439595 439597 0.999 + . logic_name=eponine scaffold_55 . biological_region 439702 439704 0.999 - . logic_name=eponine scaffold_55 . biological_region 439761 439761 0.999 - . logic_name=eponine scaffold_55 . biological_region 439808 439813 0.999 - . logic_name=eponine scaffold_55 . biological_region 439896 439898 0.999 - . logic_name=eponine scaffold_55 . biological_region 442785 442789 0.999 + . logic_name=eponine scaffold_55 . biological_region 442814 442815 0.999 - . logic_name=eponine scaffold_55 . biological_region 442920 442922 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 437762 439786 . - . ID=Physo137620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550111;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 437762 439786 . - . ID=Physo137620;Parent=Physo137620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 437762 439786 . - 0 ID=Physo137620;Parent=Physo137620;rank=1 scaffold_55 . exon 437762 439786 . - . ID=Physo137620.1;Parent=Physo137620;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 442735 450960 . + . ID=Physo157659;biotype=protein_coding;external_name=C_scaffold_55000043;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 442735 450960 . + . ID=Physo157659;Parent=Physo157659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 442735 444220 . + 0 ID=Physo157659;Parent=Physo157659;rank=1 scaffold_55 . exon 442735 444220 . + . ID=Physo157659.1;Parent=Physo157659;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 444541 444899 . + 0 ID=Physo157659;Parent=Physo157659;rank=2 scaffold_55 . exon 444541 444899 . + . ID=Physo157659.2;Parent=Physo157659;constitutive=1;ensembl_phase=1;rank=2 scaffold_55 . CDS 444970 445026 . + 0 ID=Physo157659;Parent=Physo157659;rank=3 scaffold_55 . exon 444970 445026 . + . ID=Physo157659.3;Parent=Physo157659;constitutive=1;rank=3 scaffold_55 . CDS 445104 446010 . + 0 ID=Physo157659;Parent=Physo157659;rank=4 scaffold_55 . exon 445104 446010 . + . ID=Physo157659.4;Parent=Physo157659;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_55 . CDS 446032 446689 . + 0 ID=Physo157659;Parent=Physo157659;rank=5 scaffold_55 . exon 446032 446689 . + . ID=Physo157659.5;Parent=Physo157659;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_55 . CDS 446732 447729 . + 0 ID=Physo157659;Parent=Physo157659;rank=6 scaffold_55 . exon 446732 447729 . + . ID=Physo157659.6;Parent=Physo157659;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_55 . CDS 447805 447919 . + 0 ID=Physo157659;Parent=Physo157659;rank=7 scaffold_55 . CDS 448679 448965 . + 0 ID=Physo157659;Parent=Physo157659;rank=8 scaffold_55 . CDS 448993 449118 . + 0 ID=Physo157659;Parent=Physo157659;rank=9 scaffold_55 . CDS 449173 449270 . + 0 ID=Physo157659;Parent=Physo157659;rank=10 scaffold_55 . CDS 449340 449492 . + 0 ID=Physo157659;Parent=Physo157659;rank=11 scaffold_55 . CDS 449562 449669 . + 0 ID=Physo157659;Parent=Physo157659;rank=12 scaffold_55 . CDS 449780 450070 . + 0 ID=Physo157659;Parent=Physo157659;rank=13 scaffold_55 . CDS 450137 450492 . + 0 ID=Physo157659;Parent=Physo157659;rank=14 scaffold_55 . CDS 450570 450691 . + 0 ID=Physo157659;Parent=Physo157659;rank=15 scaffold_55 . CDS 450755 450960 . + 0 ID=Physo157659;Parent=Physo157659;rank=16 scaffold_55 . repeat_region 448992 449026 . ? . description=trf scaffold_55 . repeat_region 454325 454346 . ? . description=trf scaffold_55 . repeat_region 454455 454920 . ? . description=dust scaffold_55 . repeat_region 456244 465074 . ? . description=dust scaffold_55 ensembl snRNA_gene 453755 453943 . + . ID=EPrPSOG00000000080;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_55 ensembl snRNA 453755 453943 . + . ID=EPrPSOT00000000080;Parent=EPrPSOG00000000080;biotype=snRNA;logic_name=ncrna_eg scaffold_55 . exon 453755 453943 . + . ID=EPrPSOE00000000080;Parent=EPrPSOT00000000080;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 451119 452003 . - . ID=Physo137623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550114;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 451119 452003 . - . ID=Physo137623;Parent=Physo137623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 451119 452003 . - 0 ID=Physo137623;Parent=Physo137623;rank=1 scaffold_55 . exon 451119 452003 . - . ID=Physo137623.1;Parent=Physo137623;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 452318 453175 . - . ID=Physo137624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550115;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 452318 453175 . - . ID=Physo137624;Parent=Physo137624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 452318 453175 . - 0 ID=Physo137624;Parent=Physo137624;rank=1 scaffold_55 . exon 452318 453175 . - . ID=Physo137624.1;Parent=Physo137624;constitutive=1;rank=1 scaffold_55 ensembl protein_coding_gene 453999 456055 . + . ID=Physo137625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550116;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 453999 456055 . + . ID=Physo137625;Parent=Physo137625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 453999 454449 . + 0 ID=Physo137625;Parent=Physo137625;rank=1 scaffold_55 . exon 453999 454449 . + . ID=Physo137625.1;Parent=Physo137625;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_55 . CDS 454999 455890 . + 0 ID=Physo137625;Parent=Physo137625;rank=2 scaffold_55 . exon 454999 455890 . + . ID=Physo137625.2;Parent=Physo137625;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_55 . CDS 455923 456055 . + 0 ID=Physo137625;Parent=Physo137625;rank=3 scaffold_55 . exon 455923 456055 . + . ID=Physo137625.3;Parent=Physo137625;constitutive=1;ensembl_phase=2;rank=3 scaffold_55 . exon 447805 447919 . + . ID=Physo157659.7;Parent=Physo157659;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_55 . exon 448679 448965 . + . ID=Physo157659.8;Parent=Physo157659;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_55 . exon 448993 449118 . + . ID=Physo157659.9;Parent=Physo157659;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_55 . exon 449173 449270 . + . ID=Physo157659.10;Parent=Physo157659;constitutive=1;ensembl_phase=1;rank=10 scaffold_55 . exon 449340 449492 . + . ID=Physo157659.11;Parent=Physo157659;constitutive=1;rank=11 scaffold_55 . exon 449562 449669 . + . ID=Physo157659.12;Parent=Physo157659;constitutive=1;rank=12 scaffold_55 . exon 449780 450070 . + . ID=Physo157659.13;Parent=Physo157659;constitutive=1;rank=13 scaffold_55 . exon 450137 450492 . + . ID=Physo157659.14;Parent=Physo157659;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_55 . exon 450570 450691 . + . ID=Physo157659.15;Parent=Physo157659;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=15 scaffold_55 . exon 450755 450960 . + . ID=Physo157659.16;Parent=Physo157659;constitutive=1;ensembl_phase=1;rank=16 scaffold_55 . biological_region 465323 465330 0.999 - . logic_name=eponine scaffold_55 . biological_region 465381 465385 0.999 + . logic_name=eponine scaffold_55 . biological_region 465434 465438 0.999 - . logic_name=eponine scaffold_55 . biological_region 465508 465514 0.999 + . logic_name=eponine scaffold_55 . biological_region 465621 465621 0.999 + . logic_name=eponine scaffold_55 . biological_region 465622 465624 0.999 - . logic_name=eponine scaffold_55 . biological_region 465676 465679 0.999 + . logic_name=eponine scaffold_55 . biological_region 465714 465717 0.999 - . logic_name=eponine scaffold_55 . biological_region 465733 465737 0.999 - . logic_name=eponine scaffold_55 . biological_region 465796 465796 0.999 - . logic_name=eponine scaffold_55 . biological_region 465809 465814 0.999 + . logic_name=eponine scaffold_55 . biological_region 465821 465824 0.999 + . logic_name=eponine scaffold_55 . biological_region 465821 465829 0.999 - . logic_name=eponine scaffold_55 . biological_region 465849 465853 0.999 - . logic_name=eponine scaffold_55 . biological_region 465877 465878 0.999 - . logic_name=eponine scaffold_55 . biological_region 466288 466292 0.999 - . logic_name=eponine scaffold_55 . biological_region 466385 466391 0.999 + . logic_name=eponine scaffold_55 . biological_region 466435 466435 0.999 - . logic_name=eponine scaffold_55 . biological_region 466476 466477 0.999 - . logic_name=eponine scaffold_55 . biological_region 466481 466484 0.999 - . logic_name=eponine scaffold_55 . biological_region 466764 466765 0.999 - . logic_name=eponine scaffold_55 ensembl protein_coding_gene 465485 466909 . + . ID=Physo137626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_550117;logic_name=jgi_physo1_1 scaffold_55 ensembl transcript 465485 466909 . + . ID=Physo137626;Parent=Physo137626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_55 . CDS 465485 466909 . + 0 ID=Physo137626;Parent=Physo137626;rank=1 scaffold_55 . exon 465485 466909 . + . ID=Physo137626.1;Parent=Physo137626;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_49 1 476121 scaffold_49 . repeat_region 1221 1267 . ? . description=trf scaffold_49 . repeat_region 2383 2815 . ? . description=dust scaffold_49 . repeat_region 4121 4167 . ? . description=trf scaffold_49 . repeat_region 5791 5824 . ? . description=trf scaffold_49 . repeat_region 7520 7532 . ? . description=dust scaffold_49 . repeat_region 9448 9457 . ? . description=dust scaffold_49 . repeat_region 9575 9626 . ? . description=dust scaffold_49 . repeat_region 9576 9617 . ? . description=trf scaffold_49 ensembl protein_coding_gene 6537 8535 . - . ID=Physo136863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490001;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 6537 8535 . - . ID=Physo136863;Parent=Physo136863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 6537 7310 . - 0 ID=Physo136863;Parent=Physo136863;rank=4 scaffold_49 . exon 6537 7310 . - . ID=Physo136863.4;Parent=Physo136863;constitutive=1;rank=4 scaffold_49 . CDS 7356 7424 . - 0 ID=Physo136863;Parent=Physo136863;rank=3 scaffold_49 . exon 7356 7424 . - . ID=Physo136863.3;Parent=Physo136863;constitutive=1;rank=3 scaffold_49 . CDS 7543 8240 . - 0 ID=Physo136863;Parent=Physo136863;rank=2 scaffold_49 . exon 7543 8240 . - . ID=Physo136863.2;Parent=Physo136863;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 8490 8535 . - 0 ID=Physo136863;Parent=Physo136863;rank=1 scaffold_49 . exon 8490 8535 . - . ID=Physo136863.1;Parent=Physo136863;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 12165 13364 . + . ID=Physo136864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490002;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 12165 13364 . + . ID=Physo136864;Parent=Physo136864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 12165 13364 . + 0 ID=Physo136864;Parent=Physo136864;rank=1 scaffold_49 . exon 12165 13364 . + . ID=Physo136864.1;Parent=Physo136864;constitutive=1;rank=1 scaffold_49 . biological_region 22693 22695 0.999 - . logic_name=eponine scaffold_49 . repeat_region 25877 25884 . ? . description=dust scaffold_49 . biological_region 26562 26571 0.999 - . logic_name=eponine scaffold_49 . biological_region 27945 27950 0.999 + . logic_name=eponine scaffold_49 . biological_region 28580 28583 0.999 + . logic_name=eponine scaffold_49 . biological_region 28777 28782 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 26172 28120 . + . ID=Physo136865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490003;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 26172 28120 . + . ID=Physo136865;Parent=Physo136865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 26172 26293 . + 0 ID=Physo136865;Parent=Physo136865;rank=1 scaffold_49 . exon 26172 26293 . + . ID=Physo136865.1;Parent=Physo136865;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 26370 26788 . + 0 ID=Physo136865;Parent=Physo136865;rank=2 scaffold_49 . exon 26370 26788 . + . ID=Physo136865.2;Parent=Physo136865;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 26870 27020 . + 0 ID=Physo136865;Parent=Physo136865;rank=3 scaffold_49 . exon 26870 27020 . + . ID=Physo136865.3;Parent=Physo136865;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_49 . CDS 27174 27269 . + 0 ID=Physo136865;Parent=Physo136865;rank=4 scaffold_49 . exon 27174 27269 . + . ID=Physo136865.4;Parent=Physo136865;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_49 . CDS 27340 27631 . + 0 ID=Physo136865;Parent=Physo136865;rank=5 scaffold_49 . exon 27340 27631 . + . ID=Physo136865.5;Parent=Physo136865;constitutive=1;ensembl_phase=2;rank=5 scaffold_49 . CDS 27700 27811 . + 0 ID=Physo136865;Parent=Physo136865;rank=6 scaffold_49 . exon 27700 27811 . + . ID=Physo136865.6;Parent=Physo136865;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_49 . CDS 27900 28069 . + 0 ID=Physo136865;Parent=Physo136865;rank=7 scaffold_49 . exon 27900 28120 . + . ID=Physo136865.7;Parent=Physo136865;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_49 ensembl protein_coding_gene 28576 32151 . + . ID=Physo136866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490004;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 28576 32151 . + . ID=Physo136866;Parent=Physo136866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 28576 32151 . + 0 ID=Physo136866;Parent=Physo136866;rank=1 scaffold_49 . exon 28576 32151 . + . ID=Physo136866.1;Parent=Physo136866;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 32280 35001 . - . ID=Physo136867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490005;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 32280 35001 . - . ID=Physo136867;Parent=Physo136867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 32280 34598 . - 0 ID=Physo136867;Parent=Physo136867;rank=3 scaffold_49 . exon 32280 34598 . - . ID=Physo136867.3;Parent=Physo136867;constitutive=1;rank=3 scaffold_49 . CDS 34669 34881 . - 0 ID=Physo136867;Parent=Physo136867;rank=2 scaffold_49 . exon 34669 34881 . - . ID=Physo136867.2;Parent=Physo136867;constitutive=1;rank=2 scaffold_49 . CDS 34948 35001 . - 0 ID=Physo136867;Parent=Physo136867;rank=1 scaffold_49 . exon 34948 35001 . - . ID=Physo136867.1;Parent=Physo136867;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 35411 37192 . - . ID=Physo136868;biotype=protein_coding;description=PsAvh145 [Source:UniProtKB/TrEMBL%3BAcc:E0W580];external_name=estExt_fgenesh1_pg.C_490006;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 35411 37192 . - . ID=Physo136868;Parent=Physo136868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 35411 37192 . - 0 ID=Physo136868;Parent=Physo136868;rank=1 scaffold_49 . exon 35411 37192 . - . ID=Physo136868.1;Parent=Physo136868;constitutive=1;rank=1 scaffold_49 . repeat_region 40333 40340 . ? . description=dust scaffold_49 . biological_region 40893 40897 0.999 - . logic_name=eponine scaffold_49 . biological_region 40948 40951 0.999 + . logic_name=eponine scaffold_49 . biological_region 40963 40966 0.999 - . logic_name=eponine scaffold_49 . repeat_region 41428 41576 . ? . description=trf scaffold_49 . repeat_region 44524 44541 . ? . description=dust scaffold_49 . repeat_region 45572 45590 . ? . description=dust scaffold_49 . repeat_region 45679 45730 . ? . description=trf scaffold_49 ensembl protein_coding_gene 57213 58256 . + . ID=Physo118113;biotype=protein_coding;external_name=estExt_Genewise1.C_490026;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 57213 58256 . + . ID=Physo118113;Parent=Physo118113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 57213 58256 . + . ID=Physo118113.1;Parent=Physo118113;constitutive=1;ensembl_phase=-1;rank=1 scaffold_49 . CDS 57474 58256 . + 0 ID=Physo118113;Parent=Physo118113;rank=1 scaffold_49 ensembl protein_coding_gene 49683 51464 . + . ID=Physo136869;biotype=protein_coding;description=PsAvh144 [Source:UniProtKB/TrEMBL%3BAcc:E0W581];external_name=estExt_fgenesh1_pg.C_490007;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 49683 51464 . + . ID=Physo136869;Parent=Physo136869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 49683 51464 . + 0 ID=Physo136869;Parent=Physo136869;rank=1 scaffold_49 . exon 49683 51464 . + . ID=Physo136869.1;Parent=Physo136869;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 53052 54353 . + . ID=Physo136870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490008;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 53052 54353 . + . ID=Physo136870;Parent=Physo136870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 53052 54353 . + 0 ID=Physo136870;Parent=Physo136870;rank=1 scaffold_49 . exon 53052 54353 . + . ID=Physo136870.1;Parent=Physo136870;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 54542 55378 . - . ID=Physo136871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490009;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 54542 55378 . - . ID=Physo136871;Parent=Physo136871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 54542 55378 . - 0 ID=Physo136871;Parent=Physo136871;rank=1 scaffold_49 . exon 54542 55378 . - . ID=Physo136871.1;Parent=Physo136871;constitutive=1;rank=1 scaffold_49 . repeat_region 61588 61595 . ? . description=dust scaffold_49 . repeat_region 68796 68804 . ? . description=dust scaffold_49 ensembl protein_coding_gene 61398 62834 . + . ID=Physo136873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490011;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 61398 62834 . + . ID=Physo136873;Parent=Physo136873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 61398 61515 . + . ID=Physo136873.1;Parent=Physo136873;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_49 . CDS 61418 61515 . + 0 ID=Physo136873;Parent=Physo136873;rank=1 scaffold_49 . CDS 61601 61833 . + 0 ID=Physo136873;Parent=Physo136873;rank=2 scaffold_49 . exon 61601 61833 . + . ID=Physo136873.2;Parent=Physo136873;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 61937 62652 . + 0 ID=Physo136873;Parent=Physo136873;rank=3 scaffold_49 . exon 61937 62834 . + . ID=Physo136873.3;Parent=Physo136873;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_49 ensembl protein_coding_gene 62948 63738 . - . ID=Physo136874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490012;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 62948 63738 . - . ID=Physo136874;Parent=Physo136874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 62948 63591 . - 0 ID=Physo136874;Parent=Physo136874;rank=2 scaffold_49 . exon 62948 63591 . - . ID=Physo136874.2;Parent=Physo136874;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 63672 63738 . - 0 ID=Physo136874;Parent=Physo136874;rank=1 scaffold_49 . exon 63672 63738 . - . ID=Physo136874.1;Parent=Physo136874;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 63981 66068 . - . ID=Physo136875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490013;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 63981 66068 . - . ID=Physo136875;Parent=Physo136875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 63981 66068 . - 0 ID=Physo136875;Parent=Physo136875;rank=1 scaffold_49 . exon 63981 66068 . - . ID=Physo136875.1;Parent=Physo136875;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 68045 68476 . - . ID=Physo136876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490014;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 68045 68476 . - . ID=Physo136876;Parent=Physo136876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 68045 68407 . - 0 ID=Physo136876;Parent=Physo136876;rank=2 scaffold_49 . exon 68045 68407 . - . ID=Physo136876.2;Parent=Physo136876;constitutive=1;rank=2 scaffold_49 . CDS 68438 68476 . - 0 ID=Physo136876;Parent=Physo136876;rank=1 scaffold_49 . exon 68438 68476 . - . ID=Physo136876.1;Parent=Physo136876;constitutive=1;rank=1 scaffold_49 . biological_region 72845 72845 0.999 + . logic_name=eponine scaffold_49 . biological_region 72947 72950 0.999 - . logic_name=eponine scaffold_49 . biological_region 76229 76231 0.999 + . logic_name=eponine scaffold_49 . repeat_region 78185 78213 . - . description=Polinton-1_PI scaffold_49 ensembl protein_coding_gene 69517 70176 . - . ID=Physo136877;biotype=protein_coding;description=PsAvh232 [Source:UniProtKB/TrEMBL%3BAcc:E0W582];external_name=estExt_fgenesh1_pg.C_490015;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 69517 70176 . - . ID=Physo136877;Parent=Physo136877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 69517 70176 . - 0 ID=Physo136877;Parent=Physo136877;rank=1 scaffold_49 . exon 69517 70176 . - . ID=Physo136877.1;Parent=Physo136877;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 71149 72300 . - . ID=Physo136878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490016;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 71149 72300 . - . ID=Physo136878;Parent=Physo136878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 71149 72300 . - 0 ID=Physo136878;Parent=Physo136878;rank=1 scaffold_49 . exon 71149 72300 . - . ID=Physo136878.1;Parent=Physo136878;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 73952 75952 . + . ID=Physo136879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490017;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 73952 75952 . + . ID=Physo136879;Parent=Physo136879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 73952 75952 . + 0 ID=Physo136879;Parent=Physo136879;rank=1 scaffold_49 . exon 73952 75952 . + . ID=Physo136879.1;Parent=Physo136879;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 78644 79870 . - . ID=Physo136880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490018;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 78644 79870 . - . ID=Physo136880;Parent=Physo136880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 78644 79870 . - 0 ID=Physo136880;Parent=Physo136880;rank=1 scaffold_49 . exon 78644 79870 . - . ID=Physo136880.1;Parent=Physo136880;constitutive=1;rank=1 scaffold_49 . repeat_region 88191 88254 . ? . description=dust scaffold_49 ensembl protein_coding_gene 80327 81604 . - . ID=Physo136881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490019;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 80327 81604 . - . ID=Physo136881;Parent=Physo136881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 80327 81604 . - 0 ID=Physo136881;Parent=Physo136881;rank=1 scaffold_49 . exon 80327 81604 . - . ID=Physo136881.1;Parent=Physo136881;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 85299 88286 . - . ID=Physo136882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490020;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 85299 88286 . - . ID=Physo136882;Parent=Physo136882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 85299 87732 . - 0 ID=Physo136882;Parent=Physo136882;rank=2 scaffold_49 . exon 85299 87732 . - . ID=Physo136882.2;Parent=Physo136882;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 87817 88286 . - 0 ID=Physo136882;Parent=Physo136882;rank=1 scaffold_49 . exon 87817 88286 . - . ID=Physo136882.1;Parent=Physo136882;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . biological_region 89804 89804 0.999 + . logic_name=eponine scaffold_49 . biological_region 90854 90857 0.999 + . logic_name=eponine scaffold_49 . biological_region 91168 91171 0.999 + . logic_name=eponine scaffold_49 . biological_region 91215 91217 0.999 + . logic_name=eponine scaffold_49 . biological_region 91285 91287 0.999 + . logic_name=eponine scaffold_49 . biological_region 91818 91818 0.999 - . logic_name=eponine scaffold_49 . biological_region 94472 94476 0.999 - . logic_name=eponine scaffold_49 . biological_region 96742 96742 0.999 - . logic_name=eponine scaffold_49 . biological_region 96824 96826 0.999 + . logic_name=eponine scaffold_49 . biological_region 96960 96964 0.999 - . logic_name=eponine scaffold_49 . biological_region 97003 97004 0.999 - . logic_name=eponine scaffold_49 . biological_region 97054 97060 0.999 + . logic_name=eponine scaffold_49 . biological_region 97208 97210 0.999 - . logic_name=eponine scaffold_49 . biological_region 97527 97529 0.999 - . logic_name=eponine scaffold_49 . biological_region 97703 97704 0.999 + . logic_name=eponine scaffold_49 . biological_region 97741 97741 0.999 + . logic_name=eponine scaffold_49 . biological_region 97961 97961 0.999 + . logic_name=eponine scaffold_49 . biological_region 98011 98013 0.999 + . logic_name=eponine scaffold_49 . repeat_region 98803 98860 . ? . description=trf scaffold_49 . repeat_region 98803 98869 . ? . description=trf scaffold_49 ensembl protein_coding_gene 96769 98383 . + . ID=Physo108984;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_490001;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 96769 98383 . + . ID=Physo108984;Parent=Physo108984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 96769 96975 . + 0 ID=Physo108984;Parent=Physo108984;rank=1 scaffold_49 . exon 96769 96975 . + . ID=Physo108984.1;Parent=Physo108984;constitutive=1;rank=1 scaffold_49 . CDS 97034 98251 . + 0 ID=Physo108984;Parent=Physo108984;rank=2 scaffold_49 . exon 97034 98383 . + . ID=Physo108984.2;Parent=Physo108984;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_49 ensembl protein_coding_gene 90577 91846 . + . ID=Physo136883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490021;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 90577 91846 . + . ID=Physo136883;Parent=Physo136883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 90577 91846 . + . ID=Physo136883.1;Parent=Physo136883;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_49 . CDS 90626 91804 . + 0 ID=Physo136883;Parent=Physo136883;rank=1 scaffold_49 ensembl protein_coding_gene 92291 93733 . + . ID=Physo136884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490022;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 92291 93733 . + . ID=Physo136884;Parent=Physo136884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 92291 93733 . + 0 ID=Physo136884;Parent=Physo136884;rank=1 scaffold_49 . exon 92291 93733 . + . ID=Physo136884.1;Parent=Physo136884;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 93838 95973 . - . ID=Physo136885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490023;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 93838 95973 . - . ID=Physo136885;Parent=Physo136885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 93838 95973 . - 0 ID=Physo136885;Parent=Physo136885;rank=1 scaffold_49 . exon 93838 95973 . - . ID=Physo136885.1;Parent=Physo136885;constitutive=1;rank=1 scaffold_49 . repeat_region 101798 101818 . ? . description=dust scaffold_49 . repeat_region 106170 106177 . ? . description=dust scaffold_49 ensembl protein_coding_gene 99902 100519 . + . ID=Physo136887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490025;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 99902 100519 . + . ID=Physo136887;Parent=Physo136887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 99902 100519 . + 0 ID=Physo136887;Parent=Physo136887;rank=1 scaffold_49 . exon 99902 100519 . + . ID=Physo136887.1;Parent=Physo136887;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 101036 102545 . - . ID=Physo136888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490026;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 101036 102545 . - . ID=Physo136888;Parent=Physo136888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 101036 101770 . - 0 ID=Physo136888;Parent=Physo136888;rank=4 scaffold_49 . exon 101036 101770 . - . ID=Physo136888.4;Parent=Physo136888;constitutive=1;rank=4 scaffold_49 . CDS 101869 101949 . - 0 ID=Physo136888;Parent=Physo136888;rank=3 scaffold_49 . exon 101869 101949 . - . ID=Physo136888.3;Parent=Physo136888;constitutive=1;rank=3 scaffold_49 . CDS 102033 102153 . - 0 ID=Physo136888;Parent=Physo136888;rank=2 scaffold_49 . exon 102033 102153 . - . ID=Physo136888.2;Parent=Physo136888;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 102220 102545 . - 0 ID=Physo136888;Parent=Physo136888;rank=1 scaffold_49 . exon 102220 102545 . - . ID=Physo136888.1;Parent=Physo136888;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 102778 105637 . - . ID=Physo136889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490027;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 102778 105637 . - . ID=Physo136889;Parent=Physo136889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 102778 103216 . - 0 ID=Physo136889;Parent=Physo136889;rank=7 scaffold_49 . exon 102778 103216 . - . ID=Physo136889.7;Parent=Physo136889;constitutive=1;ensembl_phase=2;rank=7 scaffold_49 . CDS 103323 104020 . - 0 ID=Physo136889;Parent=Physo136889;rank=6 scaffold_49 . exon 103323 104020 . - . ID=Physo136889.6;Parent=Physo136889;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_49 . CDS 104105 104264 . - 0 ID=Physo136889;Parent=Physo136889;rank=5 scaffold_49 . exon 104105 104264 . - . ID=Physo136889.5;Parent=Physo136889;constitutive=1;ensembl_phase=2;rank=5 scaffold_49 . CDS 104375 104551 . - 0 ID=Physo136889;Parent=Physo136889;rank=4 scaffold_49 . exon 104375 104551 . - . ID=Physo136889.4;Parent=Physo136889;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_49 . CDS 104615 104753 . - 0 ID=Physo136889;Parent=Physo136889;rank=3 scaffold_49 . exon 104615 104753 . - . ID=Physo136889.3;Parent=Physo136889;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_49 . CDS 104812 105288 . - 0 ID=Physo136889;Parent=Physo136889;rank=2 scaffold_49 . exon 104812 105288 . - . ID=Physo136889.2;Parent=Physo136889;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 105502 105637 . - 0 ID=Physo136889;Parent=Physo136889;rank=1 scaffold_49 . exon 105502 105637 . - . ID=Physo136889.1;Parent=Physo136889;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . biological_region 111216 111219 0.999 + . logic_name=eponine scaffold_49 . biological_region 111234 111234 0.999 + . logic_name=eponine scaffold_49 . biological_region 111480 111483 0.999 - . logic_name=eponine scaffold_49 . biological_region 112124 112127 0.999 - . logic_name=eponine scaffold_49 . biological_region 112229 112230 0.999 - . logic_name=eponine scaffold_49 . biological_region 113517 113521 0.999 + . logic_name=eponine scaffold_49 . biological_region 113583 113584 0.999 - . logic_name=eponine scaffold_49 . biological_region 113926 113929 0.999 - . logic_name=eponine scaffold_49 . repeat_region 116504 116528 . ? . description=trf scaffold_49 . biological_region 118825 118832 0.999 + . logic_name=eponine scaffold_49 . biological_region 118873 118876 0.999 + . logic_name=eponine scaffold_49 . biological_region 118934 118939 0.999 - . logic_name=eponine scaffold_49 . biological_region 118973 118978 0.999 - . logic_name=eponine scaffold_49 . biological_region 119031 119033 0.999 - . logic_name=eponine scaffold_49 . repeat_region 119036 119057 . ? . description=trf scaffold_49 ensembl protein_coding_gene 111243 114545 . + . ID=Physo136890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490028;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 111243 114545 . + . ID=Physo136890;Parent=Physo136890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 111243 114545 . + 0 ID=Physo136890;Parent=Physo136890;rank=1 scaffold_49 . exon 111243 114545 . + . ID=Physo136890.1;Parent=Physo136890;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 118848 122732 . + . ID=Physo136891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490029;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 118848 122732 . + . ID=Physo136891;Parent=Physo136891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 118848 122660 . + 0 ID=Physo136891;Parent=Physo136891;rank=1 scaffold_49 . exon 118848 122732 . + . ID=Physo136891.1;Parent=Physo136891;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_49 . repeat_region 119295 119326 . ? . description=dust scaffold_49 . repeat_region 128850 128877 . ? . description=dust scaffold_49 ensembl protein_coding_gene 122937 127054 . - . ID=Physo136892;biotype=protein_coding;description=RpL41-like protein [Source:UniProtKB/TrEMBL%3BAcc:A7L813];external_name=PSRPL41;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 122937 127054 . - . ID=Physo136892;Parent=Physo136892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 122937 123526 . - . ID=Physo136892.3;Parent=Physo136892;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_49 . CDS 123206 123526 . - 0 ID=Physo136892;Parent=Physo136892;rank=3 scaffold_49 . CDS 123635 123755 . - 0 ID=Physo136892;Parent=Physo136892;rank=2 scaffold_49 . exon 123635 123755 . - . ID=Physo136892.2;Parent=Physo136892;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 123969 127054 . - 0 ID=Physo136892;Parent=Physo136892;rank=1 scaffold_49 . exon 123969 127054 . - . ID=Physo136892.1;Parent=Physo136892;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 127542 128386 . - . ID=Physo136893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490031;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 127542 128386 . - . ID=Physo136893;Parent=Physo136893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 127542 127798 . - 0 ID=Physo136893;Parent=Physo136893;rank=2 scaffold_49 . exon 127542 127798 . - . ID=Physo136893.2;Parent=Physo136893;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 127882 128386 . - 0 ID=Physo136893;Parent=Physo136893;rank=1 scaffold_49 . exon 127882 128386 . - . ID=Physo136893.1;Parent=Physo136893;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 128825 130112 . - . ID=Physo136894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490032;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 128825 130112 . - . ID=Physo136894;Parent=Physo136894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 128825 130112 . - . ID=Physo136894.1;Parent=Physo136894;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_49 . CDS 128906 130000 . - 0 ID=Physo136894;Parent=Physo136894;rank=1 scaffold_49 . biological_region 129314 129317 0.999 - . logic_name=eponine scaffold_49 . biological_region 129415 129421 0.999 - . logic_name=eponine scaffold_49 . biological_region 129618 129625 0.999 + . logic_name=eponine scaffold_49 . biological_region 129631 129635 0.999 - . logic_name=eponine scaffold_49 . biological_region 129659 129664 0.999 - . logic_name=eponine scaffold_49 . biological_region 129660 129665 0.999 + . logic_name=eponine scaffold_49 . biological_region 129879 129884 0.999 - . logic_name=eponine scaffold_49 . biological_region 130215 130216 0.999 - . logic_name=eponine scaffold_49 . biological_region 130488 130491 0.999 - . logic_name=eponine scaffold_49 . biological_region 130729 130736 0.999 + . logic_name=eponine scaffold_49 . biological_region 130834 130837 0.999 - . logic_name=eponine scaffold_49 . biological_region 130873 130875 0.999 + . logic_name=eponine scaffold_49 . biological_region 130889 130891 0.999 + . logic_name=eponine scaffold_49 . biological_region 131005 131008 0.999 - . logic_name=eponine scaffold_49 . repeat_region 131724 131753 . ? . description=trf scaffold_49 . biological_region 134205 134208 0.999 + . logic_name=eponine scaffold_49 . biological_region 134237 134242 0.999 + . logic_name=eponine scaffold_49 . biological_region 137013 137018 0.999 - . logic_name=eponine scaffold_49 . biological_region 137197 137200 0.999 + . logic_name=eponine scaffold_49 . biological_region 137340 137343 0.999 + . logic_name=eponine scaffold_49 . biological_region 137353 137356 0.999 - . logic_name=eponine scaffold_49 . biological_region 137686 137694 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 131505 132993 . + . ID=Physo136895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490033;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 131505 132993 . + . ID=Physo136895;Parent=Physo136895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 131505 131712 . + 0 ID=Physo136895;Parent=Physo136895;rank=1 scaffold_49 . exon 131505 131712 . + . ID=Physo136895.1;Parent=Physo136895;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 131797 132479 . + 0 ID=Physo136895;Parent=Physo136895;rank=2 scaffold_49 . exon 131797 132479 . + . ID=Physo136895.2;Parent=Physo136895;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 132550 132993 . + 0 ID=Physo136895;Parent=Physo136895;rank=3 scaffold_49 . exon 132550 132993 . + . ID=Physo136895.3;Parent=Physo136895;constitutive=1;rank=3 scaffold_49 ensembl protein_coding_gene 135208 135726 . + . ID=Physo136896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490034;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 135208 135726 . + . ID=Physo136896;Parent=Physo136896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 135208 135726 . + 0 ID=Physo136896;Parent=Physo136896;rank=1 scaffold_49 . exon 135208 135726 . + . ID=Physo136896.1;Parent=Physo136896;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 136839 142718 . + . ID=Physo157524;biotype=protein_coding;external_name=C_scaffold_49000006;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 136839 142718 . + . ID=Physo157524;Parent=Physo157524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 136839 136868 . + 0 ID=Physo157524;Parent=Physo157524;rank=1 scaffold_49 . exon 136839 136868 . + . ID=Physo157524.1;Parent=Physo157524;constitutive=1;rank=1 scaffold_49 . CDS 136953 137928 . + 0 ID=Physo157524;Parent=Physo157524;rank=2 scaffold_49 . exon 136953 137928 . + . ID=Physo157524.2;Parent=Physo157524;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . CDS 137989 138755 . + 0 ID=Physo157524;Parent=Physo157524;rank=3 scaffold_49 . exon 137989 138755 . + . ID=Physo157524.3;Parent=Physo157524;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 138822 139606 . + 0 ID=Physo157524;Parent=Physo157524;rank=4 scaffold_49 . exon 138822 139606 . + . ID=Physo157524.4;Parent=Physo157524;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_49 . CDS 139766 139773 . + 0 ID=Physo157524;Parent=Physo157524;rank=5 scaffold_49 . CDS 139974 140141 . + 0 ID=Physo157524;Parent=Physo157524;rank=6 scaffold_49 . CDS 140372 140861 . + 0 ID=Physo157524;Parent=Physo157524;rank=7 scaffold_49 . CDS 140984 141996 . + 0 ID=Physo157524;Parent=Physo157524;rank=8 scaffold_49 . CDS 142057 142474 . + 0 ID=Physo157524;Parent=Physo157524;rank=9 scaffold_49 . CDS 142514 142718 . + 0 ID=Physo157524;Parent=Physo157524;rank=10 scaffold_49 . repeat_region 144201 144667 . ? . description=dust scaffold_49 . repeat_region 145794 145802 . ? . description=dust scaffold_49 . repeat_region 146590 146620 . ? . description=dust scaffold_49 . repeat_region 146724 146747 . ? . description=dust scaffold_49 ensembl protein_coding_gene 147670 148977 . - . ID=Physo136899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490037;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 147670 148977 . - . ID=Physo136899;Parent=Physo136899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 147670 148977 . - 0 ID=Physo136899;Parent=Physo136899;rank=1 scaffold_49 . exon 147670 148977 . - . ID=Physo136899.1;Parent=Physo136899;constitutive=1;rank=1 scaffold_49 . exon 139766 139773 . + . ID=Physo157524.5;Parent=Physo157524;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_49 . exon 139974 140141 . + . ID=Physo157524.6;Parent=Physo157524;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_49 . exon 140372 140861 . + . ID=Physo157524.7;Parent=Physo157524;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_49 . exon 140984 141996 . + . ID=Physo157524.8;Parent=Physo157524;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_49 . exon 142057 142474 . + . ID=Physo157524.9;Parent=Physo157524;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_49 . exon 142514 142718 . + . ID=Physo157524.10;Parent=Physo157524;constitutive=1;ensembl_phase=2;rank=10 scaffold_49 ensembl protein_coding_gene 143432 144070 . - . ID=Physo157525;biotype=protein_coding;external_name=C_scaffold_49000007;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 143432 144070 . - . ID=Physo157525;Parent=Physo157525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 143432 143653 . - 0 ID=Physo157525;Parent=Physo157525;rank=2 scaffold_49 . exon 143432 143653 . - . ID=Physo157525.2;Parent=Physo157525;constitutive=1;rank=2 scaffold_49 . CDS 143756 144070 . - 0 ID=Physo157525;Parent=Physo157525;rank=1 scaffold_49 . exon 143756 144070 . - . ID=Physo157525.1;Parent=Physo157525;constitutive=1;rank=1 scaffold_49 . biological_region 157031 157031 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 150068 150841 . + . ID=Physo136900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490038;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 150068 150841 . + . ID=Physo136900;Parent=Physo136900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 150068 150841 . + 0 ID=Physo136900;Parent=Physo136900;rank=1 scaffold_49 . exon 150068 150841 . + . ID=Physo136900.1;Parent=Physo136900;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 151492 155971 . - . ID=Physo136901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490039;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 151492 155971 . - . ID=Physo136901;Parent=Physo136901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 151492 152059 . - 0 ID=Physo136901;Parent=Physo136901;rank=7 scaffold_49 . exon 151492 152059 . - . ID=Physo136901.7;Parent=Physo136901;constitutive=1;ensembl_phase=2;rank=7 scaffold_49 . CDS 152254 152780 . - 0 ID=Physo136901;Parent=Physo136901;rank=6 scaffold_49 . exon 152254 152780 . - . ID=Physo136901.6;Parent=Physo136901;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_49 . CDS 152817 152843 . - 0 ID=Physo136901;Parent=Physo136901;rank=5 scaffold_49 . exon 152817 152843 . - . ID=Physo136901.5;Parent=Physo136901;constitutive=1;rank=5 scaffold_49 . CDS 152877 153179 . - 0 ID=Physo136901;Parent=Physo136901;rank=4 scaffold_49 . exon 152877 153179 . - . ID=Physo136901.4;Parent=Physo136901;constitutive=1;rank=4 scaffold_49 . CDS 153324 153910 . - 0 ID=Physo136901;Parent=Physo136901;rank=3 scaffold_49 . exon 153324 153910 . - . ID=Physo136901.3;Parent=Physo136901;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 154172 155194 . - 0 ID=Physo136901;Parent=Physo136901;rank=2 scaffold_49 . exon 154172 155194 . - . ID=Physo136901.2;Parent=Physo136901;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 155254 155971 . - 0 ID=Physo136901;Parent=Physo136901;rank=1 scaffold_49 . exon 155254 155971 . - . ID=Physo136901.1;Parent=Physo136901;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 156950 160956 . - . ID=Physo136902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490040;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 156950 160956 . - . ID=Physo136902;Parent=Physo136902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 156950 157206 . - 0 ID=Physo136902;Parent=Physo136902;rank=6 scaffold_49 . exon 156950 157206 . - . ID=Physo136902.6;Parent=Physo136902;constitutive=1;ensembl_phase=1;rank=6 scaffold_49 . CDS 157249 157692 . - 0 ID=Physo136902;Parent=Physo136902;rank=5 scaffold_49 . exon 157249 157692 . - . ID=Physo136902.5;Parent=Physo136902;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_49 . CDS 157822 159044 . - 0 ID=Physo136902;Parent=Physo136902;rank=4 scaffold_49 . exon 157822 159044 . - . ID=Physo136902.4;Parent=Physo136902;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 159262 159583 . - 0 ID=Physo136902;Parent=Physo136902;rank=3 scaffold_49 . CDS 160070 160442 . - 0 ID=Physo136902;Parent=Physo136902;rank=2 scaffold_49 . CDS 160522 160956 . - 0 ID=Physo136902;Parent=Physo136902;rank=1 scaffold_49 . repeat_region 162001 162025 . ? . description=dust scaffold_49 . repeat_region 162335 162376 . ? . description=trf scaffold_49 . repeat_region 167704 168120 . + . description=Gypsy-2-I_PI-int scaffold_49 . exon 159262 159583 . - . ID=Physo136902.3;Parent=Physo136902;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_49 . exon 160070 160442 . - . ID=Physo136902.2;Parent=Physo136902;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . exon 160522 160956 . - . ID=Physo136902.1;Parent=Physo136902;constitutive=1;rank=1 scaffold_49 . biological_region 176105 176109 0.999 + . logic_name=eponine scaffold_49 ensembl protein_coding_gene 168947 169339 . - . ID=Physo136903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490041;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 168947 169339 . - . ID=Physo136903;Parent=Physo136903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 168947 169339 . - 0 ID=Physo136903;Parent=Physo136903;rank=1 scaffold_49 . exon 168947 169339 . - . ID=Physo136903.1;Parent=Physo136903;constitutive=1;rank=1 scaffold_49 . repeat_region 179680 179745 . ? . description=trf scaffold_49 . repeat_region 181758 181774 . ? . description=dust scaffold_49 . repeat_region 181758 181777 . ? . description=trf scaffold_49 . repeat_region 184055 184071 . ? . description=dust scaffold_49 . repeat_region 186464 189534 . - . description=Gypsy-2-I_PI-int scaffold_49 . repeat_region 194661 194781 . + . description=(CAG)n scaffold_49 . biological_region 197447 197448 0.999 + . logic_name=eponine scaffold_49 . biological_region 197530 197532 0.999 - . logic_name=eponine scaffold_49 . biological_region 197585 197588 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 194562 195757 . + . ID=Physo108985;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_490002;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 194562 195757 . + . ID=Physo108985;Parent=Physo108985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 194562 195130 . + 0 ID=Physo108985;Parent=Physo108985;rank=1 scaffold_49 . exon 194562 195130 . + . ID=Physo108985.1;Parent=Physo108985;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 195157 195757 . + 0 ID=Physo108985;Parent=Physo108985;rank=2 scaffold_49 . exon 195157 195757 . + . ID=Physo108985.2;Parent=Physo108985;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 ensembl protein_coding_gene 190408 190881 . - . ID=Physo136904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490042;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 190408 190881 . - . ID=Physo136904;Parent=Physo136904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 190408 190774 . - 0 ID=Physo136904;Parent=Physo136904;rank=2 scaffold_49 . exon 190408 190774 . - . ID=Physo136904.2;Parent=Physo136904;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 190874 190881 . - 0 ID=Physo136904;Parent=Physo136904;rank=1 scaffold_49 . exon 190874 190881 . - . ID=Physo136904.1;Parent=Physo136904;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 197034 198678 . + . ID=Physo136906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490044;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 197034 198678 . + . ID=Physo136906;Parent=Physo136906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 197034 197584 . + . ID=Physo136906.1;Parent=Physo136906;constitutive=1;ensembl_phase=-1;rank=1 scaffold_49 . CDS 197336 197584 . + 0 ID=Physo136906;Parent=Physo136906;rank=1 scaffold_49 . CDS 197669 197807 . + 0 ID=Physo136906;Parent=Physo136906;rank=2 scaffold_49 . exon 197669 197807 . + . ID=Physo136906.2;Parent=Physo136906;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . CDS 197828 198678 . + 0 ID=Physo136906;Parent=Physo136906;rank=3 scaffold_49 . exon 197828 198678 . + . ID=Physo136906.3;Parent=Physo136906;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . repeat_region 202338 202346 . ? . description=dust scaffold_49 . repeat_region 202388 202397 . ? . description=dust scaffold_49 . repeat_region 203337 203344 . ? . description=dust scaffold_49 ensembl protein_coding_gene 198798 200783 . - . ID=Physo136907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490045;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 198798 200783 . - . ID=Physo136907;Parent=Physo136907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 198798 200783 . - . ID=Physo136907.1;Parent=Physo136907;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_49 . CDS 198920 200761 . - 0 ID=Physo136907;Parent=Physo136907;rank=1 scaffold_49 ensembl protein_coding_gene 203634 204584 . - . ID=Physo136908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490046;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 203634 204584 . - . ID=Physo136908;Parent=Physo136908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 203634 204584 . - 0 ID=Physo136908;Parent=Physo136908;rank=1 scaffold_49 . exon 203634 204584 . - . ID=Physo136908.1;Parent=Physo136908;constitutive=1;rank=1 scaffold_49 . biological_region 214993 214993 0.999 + . logic_name=eponine scaffold_49 . repeat_region 215758 215843 . ? . description=trf scaffold_49 ensembl protein_coding_gene 216853 217734 . + . ID=Physo136909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490047;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 216853 217734 . + . ID=Physo136909;Parent=Physo136909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 216853 217734 . + 0 ID=Physo136909;Parent=Physo136909;rank=1 scaffold_49 . exon 216853 217734 . + . ID=Physo136909.1;Parent=Physo136909;constitutive=1;rank=1 scaffold_49 . repeat_region 220193 220352 . + . description=(CGA)n scaffold_49 ensembl protein_coding_gene 219203 220780 . + . ID=Physo136910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490048;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 219203 220780 . + . ID=Physo136910;Parent=Physo136910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 219203 220076 . + 0 ID=Physo136910;Parent=Physo136910;rank=1 scaffold_49 . exon 219203 220076 . + . ID=Physo136910.1;Parent=Physo136910;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 220179 220780 . + 0 ID=Physo136910;Parent=Physo136910;rank=2 scaffold_49 . exon 220179 220780 . + . ID=Physo136910.2;Parent=Physo136910;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 ensembl protein_coding_gene 221826 225190 . - . ID=Physo136911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490049;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 221826 225190 . - . ID=Physo136911;Parent=Physo136911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 221826 222581 . - 0 ID=Physo136911;Parent=Physo136911;rank=8 scaffold_49 . exon 221826 222581 . - . ID=Physo136911.8;Parent=Physo136911;constitutive=1;rank=8 scaffold_49 . CDS 222658 222710 . - 0 ID=Physo136911;Parent=Physo136911;rank=7 scaffold_49 . exon 222658 222710 . - . ID=Physo136911.7;Parent=Physo136911;constitutive=1;ensembl_phase=1;rank=7 scaffold_49 . CDS 222742 222812 . - 0 ID=Physo136911;Parent=Physo136911;rank=6 scaffold_49 . exon 222742 222812 . - . ID=Physo136911.6;Parent=Physo136911;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_49 . CDS 222840 222988 . - 0 ID=Physo136911;Parent=Physo136911;rank=5 scaffold_49 . exon 222840 222988 . - . ID=Physo136911.5;Parent=Physo136911;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_49 . CDS 223030 223175 . - 0 ID=Physo136911;Parent=Physo136911;rank=4 scaffold_49 . exon 223030 223175 . - . ID=Physo136911.4;Parent=Physo136911;constitutive=1;ensembl_phase=1;rank=4 scaffold_49 . CDS 223541 223650 . - 0 ID=Physo136911;Parent=Physo136911;rank=3 scaffold_49 . exon 223541 223650 . - . ID=Physo136911.3;Parent=Physo136911;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 223794 224788 . - 0 ID=Physo136911;Parent=Physo136911;rank=2 scaffold_49 . exon 223794 224788 . - . ID=Physo136911.2;Parent=Physo136911;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_49 . CDS 224951 225190 . - 0 ID=Physo136911;Parent=Physo136911;rank=1 scaffold_49 . exon 224951 225190 . - . ID=Physo136911.1;Parent=Physo136911;constitutive=1;rank=1 scaffold_49 . repeat_region 228228 228371 . ? . description=trf scaffold_49 . repeat_region 228228 228371 . ? . description=trf scaffold_49 . repeat_region 228231 228371 . ? . description=trf scaffold_49 . repeat_region 231402 231451 . ? . description=dust scaffold_49 . repeat_region 233285 233428 . ? . description=trf scaffold_49 . repeat_region 233285 233428 . ? . description=trf scaffold_49 . repeat_region 233288 233428 . ? . description=trf scaffold_49 . repeat_region 233631 234179 . ? . description=dust scaffold_49 . repeat_region 236372 236392 . ? . description=trf scaffold_49 . repeat_region 236447 236467 . ? . description=trf scaffold_49 ensembl protein_coding_gene 237115 237789 . + . ID=Physo136912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490050;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 237115 237789 . + . ID=Physo136912;Parent=Physo136912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 237115 237789 . + 0 ID=Physo136912;Parent=Physo136912;rank=1 scaffold_49 . exon 237115 237789 . + . ID=Physo136912.1;Parent=Physo136912;constitutive=1;rank=1 scaffold_49 . biological_region 238737 238740 0.999 - . logic_name=eponine scaffold_49 . biological_region 245360 245365 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 245113 246990 . + . ID=Physo136913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490051;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 245113 246990 . + . ID=Physo136913;Parent=Physo136913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 245113 246990 . + 0 ID=Physo136913;Parent=Physo136913;rank=1 scaffold_49 . exon 245113 246990 . + . ID=Physo136913.1;Parent=Physo136913;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 247184 249692 . + . ID=Physo136914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490052;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 247184 249692 . + . ID=Physo136914;Parent=Physo136914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 247184 247288 . + 0 ID=Physo136914;Parent=Physo136914;rank=1 scaffold_49 . exon 247184 247288 . + . ID=Physo136914.1;Parent=Physo136914;constitutive=1;rank=1 scaffold_49 . CDS 247378 247622 . + 0 ID=Physo136914;Parent=Physo136914;rank=2 scaffold_49 . exon 247378 247622 . + . ID=Physo136914.2;Parent=Physo136914;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_49 . CDS 247696 247829 . + 0 ID=Physo136914;Parent=Physo136914;rank=3 scaffold_49 . exon 247696 247829 . + . ID=Physo136914.3;Parent=Physo136914;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 248070 248231 . + 0 ID=Physo136914;Parent=Physo136914;rank=4 scaffold_49 . CDS 248364 248447 . + 0 ID=Physo136914;Parent=Physo136914;rank=5 scaffold_49 . CDS 248832 248983 . + 0 ID=Physo136914;Parent=Physo136914;rank=6 scaffold_49 . CDS 249051 249692 . + 0 ID=Physo136914;Parent=Physo136914;rank=7 scaffold_49 . repeat_region 249467 249509 . ? . description=trf scaffold_49 . repeat_region 252028 252090 . ? . description=trf scaffold_49 . repeat_region 252263 252271 . ? . description=dust scaffold_49 . repeat_region 257814 257823 . ? . description=dust scaffold_49 . exon 248070 248231 . + . ID=Physo136914.4;Parent=Physo136914;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_49 . exon 248364 248447 . + . ID=Physo136914.5;Parent=Physo136914;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_49 . exon 248832 248983 . + . ID=Physo136914.6;Parent=Physo136914;constitutive=1;ensembl_phase=1;rank=6 scaffold_49 . exon 249051 249692 . + . ID=Physo136914.7;Parent=Physo136914;constitutive=1;rank=7 scaffold_49 ensembl protein_coding_gene 251763 252167 . + . ID=Physo136915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490053;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 251763 252167 . + . ID=Physo136915;Parent=Physo136915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 251763 252167 . + 0 ID=Physo136915;Parent=Physo136915;rank=1 scaffold_49 . exon 251763 252167 . + . ID=Physo136915.1;Parent=Physo136915;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 253153 253677 . - . ID=Physo136916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490054;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 253153 253677 . - . ID=Physo136916;Parent=Physo136916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 253153 253677 . - 0 ID=Physo136916;Parent=Physo136916;rank=1 scaffold_49 . exon 253153 253677 . - . ID=Physo136916.1;Parent=Physo136916;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 255110 256362 . - . ID=Physo136917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490055;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 255110 256362 . - . ID=Physo136917;Parent=Physo136917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 255110 255195 . - 0 ID=Physo136917;Parent=Physo136917;rank=3 scaffold_49 . exon 255110 255195 . - . ID=Physo136917.3;Parent=Physo136917;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 255379 255583 . - 0 ID=Physo136917;Parent=Physo136917;rank=2 scaffold_49 . exon 255379 255583 . - . ID=Physo136917.2;Parent=Physo136917;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . CDS 255655 256362 . - 0 ID=Physo136917;Parent=Physo136917;rank=1 scaffold_49 . exon 255655 256362 . - . ID=Physo136917.1;Parent=Physo136917;constitutive=1;rank=1 scaffold_49 . biological_region 267414 267416 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 264341 268572 . - . ID=Physo136918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490056;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 264341 268572 . - . ID=Physo136918;Parent=Physo136918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 264341 265249 . - 0 ID=Physo136918;Parent=Physo136918;rank=4 scaffold_49 . exon 264341 265249 . - . ID=Physo136918.4;Parent=Physo136918;constitutive=1;rank=4 scaffold_49 . CDS 265320 266828 . - 0 ID=Physo136918;Parent=Physo136918;rank=3 scaffold_49 . exon 265320 266828 . - . ID=Physo136918.3;Parent=Physo136918;constitutive=1;rank=3 scaffold_49 . CDS 266973 267817 . - 0 ID=Physo136918;Parent=Physo136918;rank=2 scaffold_49 . exon 266973 267817 . - . ID=Physo136918.2;Parent=Physo136918;constitutive=1;ensembl_phase=1;rank=2 scaffold_49 . CDS 267891 268572 . - 0 ID=Physo136918;Parent=Physo136918;rank=1 scaffold_49 . repeat_region 267915 267952 . ? . description=trf scaffold_49 . repeat_region 275769 276601 . ? . description=dust scaffold_49 . repeat_region 276788 276811 . ? . description=dust scaffold_49 . exon 267891 268572 . - . ID=Physo136918.1;Parent=Physo136918;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 270382 272107 . + . ID=Physo136919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490057;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 270382 272107 . + . ID=Physo136919;Parent=Physo136919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 270382 270507 . + 0 ID=Physo136919;Parent=Physo136919;rank=1 scaffold_49 . exon 270382 270507 . + . ID=Physo136919.1;Parent=Physo136919;constitutive=1;rank=1 scaffold_49 . CDS 270794 271293 . + 0 ID=Physo136919;Parent=Physo136919;rank=2 scaffold_49 . exon 270794 271293 . + . ID=Physo136919.2;Parent=Physo136919;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_49 . CDS 271824 272045 . + 0 ID=Physo136919;Parent=Physo136919;rank=3 scaffold_49 . exon 271824 272045 . + . ID=Physo136919.3;Parent=Physo136919;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_49 . CDS 272101 272107 . + 0 ID=Physo136919;Parent=Physo136919;rank=4 scaffold_49 . exon 272101 272107 . + . ID=Physo136919.4;Parent=Physo136919;constitutive=1;ensembl_phase=2;rank=4 scaffold_49 ensembl protein_coding_gene 273842 275267 . + . ID=Physo136920;biotype=protein_coding;description=PsAvh153a1PsAvh153a2 [Source:UniProtKB/TrEMBL%3BAcc:E0W583];external_name=estExt_fgenesh1_pg.C_490058;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 273842 275267 . + . ID=Physo136920;Parent=Physo136920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 273842 274914 . + 0 ID=Physo136920;Parent=Physo136920;rank=1 scaffold_49 . exon 273842 274914 . + . ID=Physo136920.1;Parent=Physo136920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 274958 275267 . + 0 ID=Physo136920;Parent=Physo136920;rank=2 scaffold_49 . exon 274958 275267 . + . ID=Physo136920.2;Parent=Physo136920;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 ensembl protein_coding_gene 276885 279497 . - . ID=Physo136921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490059;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 276885 279497 . - . ID=Physo136921;Parent=Physo136921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 276885 276901 . - 0 ID=Physo136921;Parent=Physo136921;rank=3 scaffold_49 . exon 276885 276901 . - . ID=Physo136921.3;Parent=Physo136921;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . CDS 277128 277533 . - 0 ID=Physo136921;Parent=Physo136921;rank=2 scaffold_49 . exon 277128 277533 . - . ID=Physo136921.2;Parent=Physo136921;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . CDS 278160 279497 . - 0 ID=Physo136921;Parent=Physo136921;rank=1 scaffold_49 . biological_region 279085 279087 0.999 + . logic_name=eponine scaffold_49 . biological_region 279281 279283 0.999 + . logic_name=eponine scaffold_49 . biological_region 279470 279475 0.999 - . logic_name=eponine scaffold_49 . biological_region 281475 281478 0.999 + . logic_name=eponine scaffold_49 . biological_region 281499 281500 0.999 - . logic_name=eponine scaffold_49 . biological_region 282716 282721 0.999 + . logic_name=eponine scaffold_49 . biological_region 282770 282778 0.999 - . logic_name=eponine scaffold_49 . biological_region 282954 282958 0.999 + . logic_name=eponine scaffold_49 . biological_region 283613 283613 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 279839 281205 . - . ID=Physo108986;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_490003;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 279839 281205 . - . ID=Physo108986;Parent=Physo108986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 279839 281205 . - . ID=Physo108986.1;Parent=Physo108986;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_49 . CDS 280023 281153 . - 0 ID=Physo108986;Parent=Physo108986;rank=1 scaffold_49 . exon 278160 279497 . - . ID=Physo136921.1;Parent=Physo136921;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 286275 287978 . + . ID=Physo136923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490061;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 286275 287978 . + . ID=Physo136923;Parent=Physo136923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 286275 286457 . + 0 ID=Physo136923;Parent=Physo136923;rank=1 scaffold_49 . exon 286275 286457 . + . ID=Physo136923.1;Parent=Physo136923;constitutive=1;rank=1 scaffold_49 . CDS 286569 286682 . + 0 ID=Physo136923;Parent=Physo136923;rank=2 scaffold_49 . exon 286569 286682 . + . ID=Physo136923.2;Parent=Physo136923;constitutive=1;rank=2 scaffold_49 . CDS 286773 287978 . + 0 ID=Physo136923;Parent=Physo136923;rank=3 scaffold_49 . exon 286773 287978 . + . ID=Physo136923.3;Parent=Physo136923;constitutive=1;rank=3 scaffold_49 . repeat_region 290641 290677 . ? . description=trf scaffold_49 . repeat_region 290846 290911 . ? . description=trf scaffold_49 . repeat_region 290846 290929 . ? . description=dust scaffold_49 . repeat_region 294306 294313 . ? . description=dust scaffold_49 . repeat_region 296287 296294 . ? . description=dust scaffold_49 . repeat_region 296800 296807 . ? . description=dust scaffold_49 ensembl tRNA_gene 291542 291611 . + . ID=EPrPSOG00000000106;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_49 ensembl transcript 291542 291611 . + . ID=EPrPSOT00000000106;Parent=EPrPSOG00000000106;biotype=tRNA;logic_name=ncrna_eg scaffold_49 ensembl tRNA_gene 290769 290838 . + . ID=EPrPSOG00000000177;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_49 ensembl transcript 290769 290838 . + . ID=EPrPSOT00000000177;Parent=EPrPSOG00000000177;biotype=tRNA;logic_name=ncrna_eg scaffold_49 . exon 291542 291611 . + . ID=EPrPSOE00000000106;Parent=EPrPSOT00000000106;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . exon 290769 290838 . + . ID=EPrPSOE00000000177;Parent=EPrPSOT00000000177;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 288290 290028 . + . ID=Physo136924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490062;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 288290 290028 . + . ID=Physo136924;Parent=Physo136924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 288290 288568 . + 0 ID=Physo136924;Parent=Physo136924;rank=1 scaffold_49 . exon 288290 288568 . + . ID=Physo136924.1;Parent=Physo136924;constitutive=1;rank=1 scaffold_49 . CDS 288634 288747 . + 0 ID=Physo136924;Parent=Physo136924;rank=2 scaffold_49 . exon 288634 288747 . + . ID=Physo136924.2;Parent=Physo136924;constitutive=1;rank=2 scaffold_49 . CDS 288823 290028 . + 0 ID=Physo136924;Parent=Physo136924;rank=3 scaffold_49 . exon 288823 290028 . + . ID=Physo136924.3;Parent=Physo136924;constitutive=1;rank=3 scaffold_49 ensembl protein_coding_gene 296893 298529 . - . ID=Physo136925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490063;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 296893 298529 . - . ID=Physo136925;Parent=Physo136925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 296893 298098 . - 0 ID=Physo136925;Parent=Physo136925;rank=3 scaffold_49 . exon 296893 298098 . - . ID=Physo136925.3;Parent=Physo136925;constitutive=1;rank=3 scaffold_49 . CDS 298167 298280 . - 0 ID=Physo136925;Parent=Physo136925;rank=2 scaffold_49 . CDS 298344 298529 . - 0 ID=Physo136925;Parent=Physo136925;rank=1 scaffold_49 . biological_region 300008 300008 0.999 - . logic_name=eponine scaffold_49 . biological_region 300693 300700 0.999 - . logic_name=eponine scaffold_49 . biological_region 300756 300759 0.999 + . logic_name=eponine scaffold_49 . biological_region 303663 303665 0.999 - . logic_name=eponine scaffold_49 . exon 298167 298280 . - . ID=Physo136925.2;Parent=Physo136925;constitutive=1;rank=2 scaffold_49 . exon 298344 298529 . - . ID=Physo136925.1;Parent=Physo136925;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 299019 300710 . - . ID=Physo136926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490064;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 299019 300710 . - . ID=Physo136926;Parent=Physo136926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 299019 300710 . - 0 ID=Physo136926;Parent=Physo136926;rank=1 scaffold_49 . exon 299019 300710 . - . ID=Physo136926.1;Parent=Physo136926;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 301963 303678 . - . ID=Physo136927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490065;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 301963 303678 . - . ID=Physo136927;Parent=Physo136927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 301963 303678 . - 0 ID=Physo136927;Parent=Physo136927;rank=1 scaffold_49 . exon 301963 303678 . - . ID=Physo136927.1;Parent=Physo136927;constitutive=1;rank=1 scaffold_49 . repeat_region 306902 307657 . ? . description=dust scaffold_49 . repeat_region 308543 308588 . ? . description=trf scaffold_49 . repeat_region 310664 310873 . ? . description=dust scaffold_49 . repeat_region 313680 313865 . + . description=GypsyPi-1c_LTR scaffold_49 . repeat_region 313866 320627 . + . description=GypsyPi-1c_I-int scaffold_49 . repeat_region 315700 315865 . ? . description=trf scaffold_49 . repeat_region 315844 315914 . ? . description=trf scaffold_49 . repeat_region 315869 315946 . ? . description=trf scaffold_49 ensembl protein_coding_gene 309441 311473 . - . ID=Physo136928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490066;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 309441 311473 . - . ID=Physo136928;Parent=Physo136928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 309441 309543 . - 0 ID=Physo136928;Parent=Physo136928;rank=4 scaffold_49 . exon 309441 309543 . - . ID=Physo136928.4;Parent=Physo136928;constitutive=1;ensembl_phase=2;rank=4 scaffold_49 . CDS 309599 310190 . - 0 ID=Physo136928;Parent=Physo136928;rank=3 scaffold_49 . exon 309599 310190 . - . ID=Physo136928.3;Parent=Physo136928;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_49 . CDS 310232 310589 . - 0 ID=Physo136928;Parent=Physo136928;rank=2 scaffold_49 . exon 310232 310589 . - . ID=Physo136928.2;Parent=Physo136928;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_49 . CDS 310931 311473 . - 0 ID=Physo136928;Parent=Physo136928;rank=1 scaffold_49 . exon 310931 311473 . - . ID=Physo136928.1;Parent=Physo136928;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 313953 318834 . + . ID=Physo136929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490067;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 313953 318834 . + . ID=Physo136929;Parent=Physo136929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 313953 314724 . + 0 ID=Physo136929;Parent=Physo136929;rank=1 scaffold_49 . exon 313953 314724 . + . ID=Physo136929.1;Parent=Physo136929;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 314754 314874 . + 0 ID=Physo136929;Parent=Physo136929;rank=2 scaffold_49 . exon 314754 314874 . + . ID=Physo136929.2;Parent=Physo136929;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . CDS 315123 316407 . + 0 ID=Physo136929;Parent=Physo136929;rank=3 scaffold_49 . exon 315123 316407 . + . ID=Physo136929.3;Parent=Physo136929;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 316515 317300 . + 0 ID=Physo136929;Parent=Physo136929;rank=4 scaffold_49 . exon 316515 317300 . + . ID=Physo136929.4;Parent=Physo136929;constitutive=1;rank=4 scaffold_49 . CDS 317449 318396 . + 0 ID=Physo136929;Parent=Physo136929;rank=5 scaffold_49 . CDS 318456 318779 . + 0 ID=Physo136929;Parent=Physo136929;rank=6 scaffold_49 . CDS 318826 318834 . + 0 ID=Physo136929;Parent=Physo136929;rank=7 scaffold_49 . biological_region 319225 319227 0.999 + . logic_name=eponine scaffold_49 . biological_region 319274 319278 0.999 + . logic_name=eponine scaffold_49 . biological_region 320705 320707 0.999 - . logic_name=eponine scaffold_49 . biological_region 321066 321070 0.999 - . logic_name=eponine scaffold_49 . biological_region 321264 321265 0.999 - . logic_name=eponine scaffold_49 . biological_region 323582 323585 0.999 + . logic_name=eponine scaffold_49 . biological_region 325034 325034 0.999 - . logic_name=eponine scaffold_49 . biological_region 326426 326427 0.999 - . logic_name=eponine scaffold_49 . exon 317449 318396 . + . ID=Physo136929.5;Parent=Physo136929;constitutive=1;rank=5 scaffold_49 . exon 318456 318779 . + . ID=Physo136929.6;Parent=Physo136929;constitutive=1;rank=6 scaffold_49 . exon 318826 318834 . + . ID=Physo136929.7;Parent=Physo136929;constitutive=1;rank=7 scaffold_49 ensembl protein_coding_gene 319117 321332 . - . ID=Physo136930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490068;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 319117 321332 . - . ID=Physo136930;Parent=Physo136930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 319117 319717 . - 0 ID=Physo136930;Parent=Physo136930;rank=2 scaffold_49 . exon 319117 319717 . - . ID=Physo136930.2;Parent=Physo136930;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 319930 321332 . - 0 ID=Physo136930;Parent=Physo136930;rank=1 scaffold_49 . exon 319930 321332 . - . ID=Physo136930.1;Parent=Physo136930;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 324548 327563 . - . ID=Physo157526;biotype=protein_coding;external_name=C_scaffold_49000008;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 324548 327563 . - . ID=Physo157526;Parent=Physo157526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 324548 324652 . - 0 ID=Physo157526;Parent=Physo157526;rank=8 scaffold_49 . exon 324548 324652 . - . ID=Physo157526.8;Parent=Physo157526;constitutive=1;rank=8 scaffold_49 . CDS 324727 325188 . - 0 ID=Physo157526;Parent=Physo157526;rank=7 scaffold_49 . exon 324727 325188 . - . ID=Physo157526.7;Parent=Physo157526;constitutive=1;rank=7 scaffold_49 . CDS 325266 325346 . - 0 ID=Physo157526;Parent=Physo157526;rank=6 scaffold_49 . exon 325266 325346 . - . ID=Physo157526.6;Parent=Physo157526;constitutive=1;rank=6 scaffold_49 . CDS 325423 325689 . - 0 ID=Physo157526;Parent=Physo157526;rank=5 scaffold_49 . exon 325423 325689 . - . ID=Physo157526.5;Parent=Physo157526;constitutive=1;rank=5 scaffold_49 . CDS 325768 326139 . - 0 ID=Physo157526;Parent=Physo157526;rank=4 scaffold_49 . exon 325768 326139 . - . ID=Physo157526.4;Parent=Physo157526;constitutive=1;rank=4 scaffold_49 . CDS 326221 326517 . - 0 ID=Physo157526;Parent=Physo157526;rank=3 scaffold_49 . exon 326221 326517 . - . ID=Physo157526.3;Parent=Physo157526;constitutive=1;rank=3 scaffold_49 . CDS 326688 327135 . - 0 ID=Physo157526;Parent=Physo157526;rank=2 scaffold_49 . exon 326688 327135 . - . ID=Physo157526.2;Parent=Physo157526;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 327295 327563 . - 0 ID=Physo157526;Parent=Physo157526;rank=1 scaffold_49 . exon 327295 327563 . - . ID=Physo157526.1;Parent=Physo157526;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . repeat_region 327948 327956 . ? . description=dust scaffold_49 . repeat_region 329758 332385 . ? . description=dust scaffold_49 ensembl protein_coding_gene 328154 329684 . - . ID=Physo136932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490070;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 328154 329684 . - . ID=Physo136932;Parent=Physo136932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 328154 328810 . - 0 ID=Physo136932;Parent=Physo136932;rank=2 scaffold_49 . exon 328154 328810 . - . ID=Physo136932.2;Parent=Physo136932;constitutive=1;rank=2 scaffold_49 . CDS 329004 329684 . - 0 ID=Physo136932;Parent=Physo136932;rank=1 scaffold_49 . exon 329004 329684 . - . ID=Physo136932.1;Parent=Physo136932;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 333351 334904 . - . ID=Physo136933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490071;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 333351 334904 . - . ID=Physo136933;Parent=Physo136933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 333351 334904 . - 0 ID=Physo136933;Parent=Physo136933;rank=1 scaffold_49 . exon 333351 334904 . - . ID=Physo136933.1;Parent=Physo136933;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 335366 336760 . - . ID=Physo136934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490072;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 335366 336760 . - . ID=Physo136934;Parent=Physo136934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 335366 336760 . - 0 ID=Physo136934;Parent=Physo136934;rank=1 scaffold_49 . exon 335366 336760 . - . ID=Physo136934.1;Parent=Physo136934;constitutive=1;rank=1 scaffold_49 . biological_region 338771 338775 0.999 + . logic_name=eponine scaffold_49 . biological_region 339302 339309 0.999 - . logic_name=eponine scaffold_49 . biological_region 340743 340747 0.999 - . logic_name=eponine scaffold_49 . biological_region 340874 340880 0.999 + . logic_name=eponine scaffold_49 . biological_region 342147 342149 0.999 + . logic_name=eponine scaffold_49 . biological_region 343487 343493 0.999 + . logic_name=eponine scaffold_49 . biological_region 343602 343603 0.999 - . logic_name=eponine scaffold_49 . biological_region 345663 345665 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 337755 339530 . - . ID=Physo136935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490073;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 337755 339530 . - . ID=Physo136935;Parent=Physo136935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 337755 339530 . - 0 ID=Physo136935;Parent=Physo136935;rank=1 scaffold_49 . exon 337755 339530 . - . ID=Physo136935.1;Parent=Physo136935;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 340607 342355 . - . ID=Physo136936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490074;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 340607 342355 . - . ID=Physo136936;Parent=Physo136936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 340607 342355 . - 0 ID=Physo136936;Parent=Physo136936;rank=1 scaffold_49 . exon 340607 342355 . - . ID=Physo136936.1;Parent=Physo136936;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 343481 345364 . - . ID=Physo136937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490075;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 343481 345364 . - . ID=Physo136937;Parent=Physo136937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 343481 345364 . - 0 ID=Physo136937;Parent=Physo136937;rank=1 scaffold_49 . exon 343481 345364 . - . ID=Physo136937.1;Parent=Physo136937;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 346452 350259 . - . ID=Physo136938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490076;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 346452 350259 . - . ID=Physo136938;Parent=Physo136938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 346452 348161 . - 0 ID=Physo136938;Parent=Physo136938;rank=3 scaffold_49 . exon 346452 348161 . - . ID=Physo136938.3;Parent=Physo136938;constitutive=1;rank=3 scaffold_49 . CDS 348756 350166 . - 0 ID=Physo136938;Parent=Physo136938;rank=2 scaffold_49 . CDS 350237 350259 . - 0 ID=Physo136938;Parent=Physo136938;rank=1 scaffold_49 . repeat_region 353834 354084 . ? . description=dust scaffold_49 . exon 348756 350166 . - . ID=Physo136938.2;Parent=Physo136938;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . exon 350237 350259 . - . ID=Physo136938.1;Parent=Physo136938;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 350553 351902 . - . ID=Physo136939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490077;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 350553 351902 . - . ID=Physo136939;Parent=Physo136939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 350553 351902 . - 0 ID=Physo136939;Parent=Physo136939;rank=1 scaffold_49 . exon 350553 351902 . - . ID=Physo136939.1;Parent=Physo136939;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 352703 355347 . - . ID=Physo136940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490078;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 352703 355347 . - . ID=Physo136940;Parent=Physo136940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 352703 352882 . - 0 ID=Physo136940;Parent=Physo136940;rank=5 scaffold_49 . exon 352703 352882 . - . ID=Physo136940.5;Parent=Physo136940;constitutive=1;rank=5 scaffold_49 . CDS 352946 353793 . - 0 ID=Physo136940;Parent=Physo136940;rank=4 scaffold_49 . exon 352946 353793 . - . ID=Physo136940.4;Parent=Physo136940;constitutive=1;ensembl_phase=1;rank=4 scaffold_49 . CDS 354108 354364 . - 0 ID=Physo136940;Parent=Physo136940;rank=3 scaffold_49 . exon 354108 354364 . - . ID=Physo136940.3;Parent=Physo136940;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 354453 355131 . - 0 ID=Physo136940;Parent=Physo136940;rank=2 scaffold_49 . exon 354453 355131 . - . ID=Physo136940.2;Parent=Physo136940;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . CDS 355197 355347 . - 0 ID=Physo136940;Parent=Physo136940;rank=1 scaffold_49 . exon 355197 355347 . - . ID=Physo136940.1;Parent=Physo136940;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 356032 357445 . + . ID=Physo136941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490079;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 356032 357445 . + . ID=Physo136941;Parent=Physo136941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 356032 357010 . + . ID=Physo136941.1;Parent=Physo136941;constitutive=1;ensembl_phase=-1;rank=1 scaffold_49 . CDS 356075 357010 . + 0 ID=Physo136941;Parent=Physo136941;rank=1 scaffold_49 . CDS 357278 357445 . + 0 ID=Physo136941;Parent=Physo136941;rank=2 scaffold_49 . biological_region 357845 357848 0.999 + . logic_name=eponine scaffold_49 . biological_region 358256 358256 0.999 + . logic_name=eponine scaffold_49 . biological_region 359357 359360 0.999 + . logic_name=eponine scaffold_49 . biological_region 360882 360882 0.999 - . logic_name=eponine scaffold_49 . biological_region 361693 361698 0.999 - . logic_name=eponine scaffold_49 . biological_region 366558 366563 0.999 - . logic_name=eponine scaffold_49 . exon 357278 357445 . + . ID=Physo136941.2;Parent=Physo136941;constitutive=1;rank=2 scaffold_49 ensembl protein_coding_gene 357640 359451 . - . ID=Physo136942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490080;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 357640 359451 . - . ID=Physo136942;Parent=Physo136942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 357640 359451 . - 0 ID=Physo136942;Parent=Physo136942;rank=1 scaffold_49 . exon 357640 359451 . - . ID=Physo136942.1;Parent=Physo136942;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 361286 373064 . + . ID=Physo136943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490081;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 361286 373064 . + . ID=Physo136943;Parent=Physo136943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 361286 371550 . + 0 ID=Physo136943;Parent=Physo136943;rank=1 scaffold_49 . exon 361286 371550 . + . ID=Physo136943.1;Parent=Physo136943;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 371725 372996 . + 0 ID=Physo136943;Parent=Physo136943;rank=2 scaffold_49 . CDS 373028 373064 . + 0 ID=Physo136943;Parent=Physo136943;rank=3 scaffold_49 . exon 371725 372996 . + . ID=Physo136943.2;Parent=Physo136943;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_49 . exon 373028 373064 . + . ID=Physo136943.3;Parent=Physo136943;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 ensembl protein_coding_gene 376177 377645 . + . ID=Physo136945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490083;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 376177 377645 . + . ID=Physo136945;Parent=Physo136945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 376177 377645 . + . ID=Physo136945.1;Parent=Physo136945;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_49 . CDS 376248 377567 . + 0 ID=Physo136945;Parent=Physo136945;rank=1 scaffold_49 ensembl protein_coding_gene 373319 374829 . - . ID=Physo157534;biotype=protein_coding;external_name=C_scaffold_49000016;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 373319 374829 . - . ID=Physo157534;Parent=Physo157534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 373319 374587 . - 0 ID=Physo157534;Parent=Physo157534;rank=3 scaffold_49 . exon 373319 374587 . - . ID=Physo157534.3;Parent=Physo157534;constitutive=1;rank=3 scaffold_49 . CDS 374616 374685 . - 0 ID=Physo157534;Parent=Physo157534;rank=2 scaffold_49 . exon 374616 374685 . - . ID=Physo157534.2;Parent=Physo157534;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 374738 374829 . - 0 ID=Physo157534;Parent=Physo157534;rank=1 scaffold_49 . exon 374738 374829 . - . ID=Physo157534.1;Parent=Physo157534;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . repeat_region 379230 379290 . ? . description=trf scaffold_49 . repeat_region 379230 379290 . ? . description=dust scaffold_49 . biological_region 384287 384301 0.999 - . logic_name=eponine scaffold_49 . biological_region 384750 384755 0.999 - . logic_name=eponine scaffold_49 . biological_region 384805 384812 0.999 + . logic_name=eponine scaffold_49 . biological_region 384824 384827 0.999 + . logic_name=eponine scaffold_49 . biological_region 385183 385185 0.999 - . logic_name=eponine scaffold_49 . biological_region 385207 385209 0.999 - . logic_name=eponine scaffold_49 . biological_region 385287 385290 0.999 + . logic_name=eponine scaffold_49 . biological_region 385483 385486 0.999 + . logic_name=eponine scaffold_49 . repeat_region 385701 385743 . ? . description=trf scaffold_49 . biological_region 385892 385896 0.999 - . logic_name=eponine scaffold_49 . biological_region 386380 386381 0.999 + . logic_name=eponine scaffold_49 . repeat_region 386428 386455 . ? . description=trf scaffold_49 . biological_region 386466 386471 0.999 - . logic_name=eponine scaffold_49 . biological_region 386697 386698 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 379290 379742 . + . ID=Physo136946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490084;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 379290 379742 . + . ID=Physo136946;Parent=Physo136946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 379290 379742 . + 0 ID=Physo136946;Parent=Physo136946;rank=1 scaffold_49 . exon 379290 379742 . + . ID=Physo136946.1;Parent=Physo136946;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 383063 385922 . + . ID=Physo136947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490085;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 383063 385922 . + . ID=Physo136947;Parent=Physo136947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 383063 384429 . + 0 ID=Physo136947;Parent=Physo136947;rank=1 scaffold_49 . exon 383063 384429 . + . ID=Physo136947.1;Parent=Physo136947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 . CDS 384659 385922 . + 0 ID=Physo136947;Parent=Physo136947;rank=2 scaffold_49 . exon 384659 385922 . + . ID=Physo136947.2;Parent=Physo136947;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 ensembl protein_coding_gene 386057 388012 . + . ID=Physo136948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490086;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 386057 388012 . + . ID=Physo136948;Parent=Physo136948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 386057 386083 . + 0 ID=Physo136948;Parent=Physo136948;rank=1 scaffold_49 . exon 386057 386083 . + . ID=Physo136948.1;Parent=Physo136948;constitutive=1;rank=1 scaffold_49 . CDS 386272 387951 . + 0 ID=Physo136948;Parent=Physo136948;rank=2 scaffold_49 . exon 386272 388012 . + . ID=Physo136948.2;Parent=Physo136948;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_49 ensembl protein_coding_gene 388338 389861 . - . ID=Physo136949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490087;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 388338 389861 . - . ID=Physo136949;Parent=Physo136949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 388338 389556 . - . ID=Physo136949.2;Parent=Physo136949;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_49 . CDS 388646 389556 . - 0 ID=Physo136949;Parent=Physo136949;rank=2 scaffold_49 . CDS 389648 389861 . - 0 ID=Physo136949;Parent=Physo136949;rank=1 scaffold_49 . exon 389648 389861 . - . ID=Physo136949.1;Parent=Physo136949;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 395567 398167 . - . ID=Physo136950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490088;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 395567 398167 . - . ID=Physo136950;Parent=Physo136950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 395567 398167 . - 0 ID=Physo136950;Parent=Physo136950;rank=1 scaffold_49 . exon 395567 398167 . - . ID=Physo136950.1;Parent=Physo136950;constitutive=1;rank=1 scaffold_49 . biological_region 397641 397641 0.999 - . logic_name=eponine scaffold_49 . biological_region 397725 397730 0.999 + . logic_name=eponine scaffold_49 . biological_region 397747 397750 0.999 - . logic_name=eponine scaffold_49 . biological_region 398068 398071 0.999 - . logic_name=eponine scaffold_49 . biological_region 398119 398119 0.999 - . logic_name=eponine scaffold_49 . repeat_region 398376 398392 . ? . description=dust scaffold_49 . biological_region 399449 399455 0.999 - . logic_name=eponine scaffold_49 . biological_region 399530 399531 0.999 - . logic_name=eponine scaffold_49 . biological_region 400282 400285 0.999 + . logic_name=eponine scaffold_49 . biological_region 401878 401880 0.999 - . logic_name=eponine scaffold_49 . biological_region 405314 405317 0.999 + . logic_name=eponine scaffold_49 . biological_region 405384 405390 0.999 + . logic_name=eponine scaffold_49 . biological_region 405412 405413 0.999 + . logic_name=eponine scaffold_49 . biological_region 405466 405472 0.999 + . logic_name=eponine scaffold_49 . biological_region 405545 405547 0.999 - . logic_name=eponine scaffold_49 . biological_region 405925 405926 0.999 + . logic_name=eponine scaffold_49 . biological_region 405928 405930 0.999 - . logic_name=eponine scaffold_49 . biological_region 406005 406007 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 400233 404637 . + . ID=Physo136951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490089;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 400233 404637 . + . ID=Physo136951;Parent=Physo136951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 400233 403997 . + 0 ID=Physo136951;Parent=Physo136951;rank=1 scaffold_49 . exon 400233 403997 . + . ID=Physo136951.1;Parent=Physo136951;constitutive=1;rank=1 scaffold_49 . CDS 404071 404349 . + 0 ID=Physo136951;Parent=Physo136951;rank=2 scaffold_49 . exon 404071 404637 . + . ID=Physo136951.2;Parent=Physo136951;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_49 ensembl protein_coding_gene 404626 406022 . - . ID=Physo136952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490090;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 404626 406022 . - . ID=Physo136952;Parent=Physo136952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . exon 404626 406022 . - . ID=Physo136952.1;Parent=Physo136952;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_49 . CDS 404685 406022 . - 0 ID=Physo136952;Parent=Physo136952;rank=1 scaffold_49 ensembl protein_coding_gene 406580 407815 . + . ID=Physo136953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490091;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 406580 407815 . + . ID=Physo136953;Parent=Physo136953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 406580 407815 . + 0 ID=Physo136953;Parent=Physo136953;rank=1 scaffold_49 . exon 406580 407815 . + . ID=Physo136953.1;Parent=Physo136953;constitutive=1;rank=1 scaffold_49 . repeat_region 406791 406826 . ? . description=trf scaffold_49 . repeat_region 410135 410440 . + . description=GypsyPi-1c_LTR scaffold_49 . repeat_region 411360 411512 . ? . description=trf scaffold_49 . repeat_region 412181 412215 . ? . description=trf scaffold_49 ensembl protein_coding_gene 408108 409583 . - . ID=Physo136954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490092;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 408108 409583 . - . ID=Physo136954;Parent=Physo136954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 408108 409583 . - 0 ID=Physo136954;Parent=Physo136954;rank=1 scaffold_49 . exon 408108 409583 . - . ID=Physo136954.1;Parent=Physo136954;constitutive=1;rank=1 scaffold_49 . biological_region 418299 418306 0.999 - . logic_name=eponine scaffold_49 . biological_region 418326 418327 0.999 + . logic_name=eponine scaffold_49 . biological_region 418356 418360 0.999 + . logic_name=eponine scaffold_49 . biological_region 419668 419675 0.999 + . logic_name=eponine scaffold_49 . biological_region 419698 419700 0.999 + . logic_name=eponine scaffold_49 . biological_region 419723 419730 0.999 + . logic_name=eponine scaffold_49 . biological_region 419751 419760 0.999 + . logic_name=eponine scaffold_49 . biological_region 419755 419777 0.999 - . logic_name=eponine scaffold_49 . biological_region 419844 419847 0.999 - . logic_name=eponine scaffold_49 . repeat_region 421527 421576 . ? . description=dust scaffold_49 . biological_region 422716 422719 0.999 + . logic_name=eponine scaffold_49 . biological_region 422920 422922 0.999 + . logic_name=eponine scaffold_49 . biological_region 422949 422955 0.999 + . logic_name=eponine scaffold_49 . biological_region 423027 423028 0.999 + . logic_name=eponine scaffold_49 . biological_region 423058 423063 0.999 - . logic_name=eponine scaffold_49 . biological_region 423073 423078 0.999 + . logic_name=eponine scaffold_49 . biological_region 423086 423088 0.999 + . logic_name=eponine scaffold_49 . biological_region 423098 423098 0.999 + . logic_name=eponine scaffold_49 . biological_region 423113 423113 0.999 - . logic_name=eponine scaffold_49 . biological_region 423135 423136 0.999 - . logic_name=eponine scaffold_49 . biological_region 423208 423209 0.999 - . logic_name=eponine scaffold_49 . biological_region 423383 423388 0.999 + . logic_name=eponine scaffold_49 . biological_region 423701 423703 0.999 + . logic_name=eponine scaffold_49 . biological_region 423766 423768 0.999 + . logic_name=eponine scaffold_49 . biological_region 423784 423784 0.999 + . logic_name=eponine scaffold_49 . biological_region 423812 423816 0.999 - . logic_name=eponine scaffold_49 . biological_region 423826 423826 0.999 + . logic_name=eponine scaffold_49 . biological_region 423830 423836 0.999 + . logic_name=eponine scaffold_49 . repeat_region 423845 423908 . ? . description=dust scaffold_49 . biological_region 423882 423886 0.999 - . logic_name=eponine scaffold_49 . biological_region 423959 423960 0.999 - . logic_name=eponine scaffold_49 . biological_region 424175 424176 0.999 - . logic_name=eponine scaffold_49 . biological_region 424378 424381 0.999 + . logic_name=eponine scaffold_49 . biological_region 424413 424416 0.999 + . logic_name=eponine scaffold_49 . biological_region 424449 424450 0.999 - . logic_name=eponine scaffold_49 . biological_region 424482 424485 0.999 - . logic_name=eponine scaffold_49 . biological_region 424815 424819 0.999 - . logic_name=eponine scaffold_49 . biological_region 425380 425380 0.999 - . logic_name=eponine scaffold_49 . biological_region 425592 425594 0.999 - . logic_name=eponine scaffold_49 . biological_region 425613 425615 0.999 - . logic_name=eponine scaffold_49 . biological_region 425761 425766 0.999 - . logic_name=eponine scaffold_49 . biological_region 425995 425999 0.999 - . logic_name=eponine scaffold_49 ensembl protein_coding_gene 419118 433915 . - . ID=Physo136955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490093;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 419118 433915 . - . ID=Physo136955;Parent=Physo136955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 419118 419543 . - 0 ID=Physo136955;Parent=Physo136955;rank=21 scaffold_49 . exon 419118 419543 . - . ID=Physo136955.21;Parent=Physo136955;constitutive=1;rank=21 scaffold_49 . CDS 419765 420600 . - 0 ID=Physo136955;Parent=Physo136955;rank=20 scaffold_49 . exon 419765 420600 . - . ID=Physo136955.20;Parent=Physo136955;constitutive=1;ensembl_phase=1;rank=20 scaffold_49 . CDS 420620 420819 . - 0 ID=Physo136955;Parent=Physo136955;rank=19 scaffold_49 . exon 420620 420819 . - . ID=Physo136955.19;Parent=Physo136955;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=19 scaffold_49 . CDS 420920 421594 . - 0 ID=Physo136955;Parent=Physo136955;rank=18 scaffold_49 . exon 420920 421594 . - . ID=Physo136955.18;Parent=Physo136955;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=18 scaffold_49 . CDS 422170 422207 . - 0 ID=Physo136955;Parent=Physo136955;rank=17 scaffold_49 . exon 422170 422207 . - . ID=Physo136955.17;Parent=Physo136955;constitutive=1;ensembl_end_phase=2;rank=17 scaffold_49 . CDS 422543 423191 . - 0 ID=Physo136955;Parent=Physo136955;rank=16 scaffold_49 . exon 422543 423191 . - . ID=Physo136955.16;Parent=Physo136955;constitutive=1;ensembl_phase=2;rank=16 scaffold_49 . CDS 423271 423506 . - 0 ID=Physo136955;Parent=Physo136955;rank=15 scaffold_49 . exon 423271 423506 . - . ID=Physo136955.15;Parent=Physo136955;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_49 . CDS 423777 423966 . - 0 ID=Physo136955;Parent=Physo136955;rank=14 scaffold_49 . exon 423777 423966 . - . ID=Physo136955.14;Parent=Physo136955;constitutive=1;ensembl_phase=2;rank=14 scaffold_49 . CDS 424037 424254 . - 0 ID=Physo136955;Parent=Physo136955;rank=13 scaffold_49 . exon 424037 424254 . - . ID=Physo136955.13;Parent=Physo136955;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_49 . CDS 424556 424988 . - 0 ID=Physo136955;Parent=Physo136955;rank=12 scaffold_49 . exon 424556 424988 . - . ID=Physo136955.12;Parent=Physo136955;constitutive=1;ensembl_phase=2;rank=12 scaffold_49 . CDS 425226 426048 . - 0 ID=Physo136955;Parent=Physo136955;rank=11 scaffold_49 . exon 425226 426048 . - . ID=Physo136955.11;Parent=Physo136955;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_49 . CDS 426317 426434 . - 0 ID=Physo136955;Parent=Physo136955;rank=10 scaffold_49 . exon 426317 426434 . - . ID=Physo136955.10;Parent=Physo136955;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_49 . CDS 426617 426778 . - 0 ID=Physo136955;Parent=Physo136955;rank=9 scaffold_49 . CDS 426821 426908 . - 0 ID=Physo136955;Parent=Physo136955;rank=8 scaffold_49 . CDS 426929 427031 . - 0 ID=Physo136955;Parent=Physo136955;rank=7 scaffold_49 . CDS 427494 429165 . - 0 ID=Physo136955;Parent=Physo136955;rank=6 scaffold_49 . CDS 429339 430286 . - 0 ID=Physo136955;Parent=Physo136955;rank=5 scaffold_49 . CDS 430308 431291 . - 0 ID=Physo136955;Parent=Physo136955;rank=4 scaffold_49 . CDS 431359 431441 . - 0 ID=Physo136955;Parent=Physo136955;rank=3 scaffold_49 . CDS 431555 433047 . - 0 ID=Physo136955;Parent=Physo136955;rank=2 scaffold_49 . CDS 433158 433915 . - 0 ID=Physo136955;Parent=Physo136955;rank=1 scaffold_49 . repeat_region 426654 426703 . ? . description=trf scaffold_49 . repeat_region 429406 430124 . - . description=GypsyPi-1c_I-int scaffold_49 . repeat_region 430411 431740 . - . description=GypsyPi-1c_I-int scaffold_49 . repeat_region 432313 432483 . ? . description=trf scaffold_49 . exon 426617 426778 . - . ID=Physo136955.9;Parent=Physo136955;constitutive=1;rank=9 scaffold_49 . exon 426821 426908 . - . ID=Physo136955.8;Parent=Physo136955;constitutive=1;ensembl_phase=2;rank=8 scaffold_49 . exon 426929 427031 . - . ID=Physo136955.7;Parent=Physo136955;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_49 . exon 427494 429165 . - . ID=Physo136955.6;Parent=Physo136955;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_49 . exon 429339 430286 . - . ID=Physo136955.5;Parent=Physo136955;constitutive=1;rank=5 scaffold_49 . exon 430308 431291 . - . ID=Physo136955.4;Parent=Physo136955;constitutive=1;rank=4 scaffold_49 . exon 431359 431441 . - . ID=Physo136955.3;Parent=Physo136955;constitutive=1;ensembl_phase=1;rank=3 scaffold_49 . exon 431555 433047 . - . ID=Physo136955.2;Parent=Physo136955;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_49 . exon 433158 433915 . - . ID=Physo136955.1;Parent=Physo136955;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 435150 439208 . + . ID=Physo136956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490094;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 435150 439208 . + . ID=Physo136956;Parent=Physo136956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 435150 436839 . + 0 ID=Physo136956;Parent=Physo136956;rank=1 scaffold_49 . exon 435150 436839 . + . ID=Physo136956.1;Parent=Physo136956;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 . CDS 437067 438336 . + 0 ID=Physo136956;Parent=Physo136956;rank=2 scaffold_49 . CDS 438362 439208 . + 0 ID=Physo136956;Parent=Physo136956;rank=3 scaffold_49 . biological_region 437494 437496 0.999 - . logic_name=eponine scaffold_49 . biological_region 442904 442906 0.999 - . logic_name=eponine scaffold_49 . repeat_region 443418 443593 . ? . description=dust scaffold_49 . biological_region 443760 443764 0.999 + . logic_name=eponine scaffold_49 . repeat_region 444581 446370 . ? . description=dust scaffold_49 . repeat_region 446371 458676 . ? . description=dust scaffold_49 ensembl protein_coding_gene 442906 443043 . - . ID=Physo118106;biotype=protein_coding;external_name=estExt_Genewise1.C_490019;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 442906 443043 . - . ID=Physo118106;Parent=Physo118106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 442906 443043 . - 0 ID=Physo118106;Parent=Physo118106;rank=1 scaffold_49 . exon 442906 443043 . - . ID=Physo118106.1;Parent=Physo118106;constitutive=1;rank=1 scaffold_49 . exon 437067 438336 . + . ID=Physo136956.2;Parent=Physo136956;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . exon 438362 439208 . + . ID=Physo136956.3;Parent=Physo136956;constitutive=1;ensembl_phase=2;rank=3 scaffold_49 ensembl protein_coding_gene 443053 444354 . - . ID=Physo136958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490096;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 443053 444354 . - . ID=Physo136958;Parent=Physo136958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 443053 443355 . - 0 ID=Physo136958;Parent=Physo136958;rank=2 scaffold_49 . exon 443053 443355 . - . ID=Physo136958.2;Parent=Physo136958;constitutive=1;rank=2 scaffold_49 . CDS 443659 444354 . - 0 ID=Physo136958;Parent=Physo136958;rank=1 scaffold_49 . exon 443659 444354 . - . ID=Physo136958.1;Parent=Physo136958;constitutive=1;rank=1 scaffold_49 . repeat_region 446371 458676 . ? . description=dust scaffold_49 . biological_region 458941 458943 0.999 + . logic_name=eponine scaffold_49 . biological_region 462784 462787 0.999 - . logic_name=eponine scaffold_49 . biological_region 462850 462852 0.999 - . logic_name=eponine scaffold_49 . biological_region 463227 463230 0.999 - . logic_name=eponine scaffold_49 . biological_region 463232 463235 0.999 + . logic_name=eponine scaffold_49 . biological_region 463244 463247 0.999 + . logic_name=eponine scaffold_49 . biological_region 463260 463266 0.999 + . logic_name=eponine scaffold_49 . biological_region 463280 463289 0.999 + . logic_name=eponine scaffold_49 . biological_region 463299 463311 0.999 + . logic_name=eponine scaffold_49 . biological_region 463339 463346 0.999 - . logic_name=eponine scaffold_49 . biological_region 463374 463381 0.999 - . logic_name=eponine scaffold_49 . biological_region 463437 463444 0.999 - . logic_name=eponine scaffold_49 . biological_region 463674 463677 0.999 + . logic_name=eponine scaffold_49 . biological_region 463824 463826 0.999 + . logic_name=eponine scaffold_49 . biological_region 464120 464126 0.999 - . logic_name=eponine scaffold_49 . repeat_region 464546 464990 . - . description=GypsyPi-1c_I-int scaffold_49 . repeat_region 465032 465118 . ? . description=trf scaffold_49 ensembl protein_coding_gene 458938 460941 . - . ID=Physo136959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490097;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 458938 460941 . - . ID=Physo136959;Parent=Physo136959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 458938 458969 . - 0 ID=Physo136959;Parent=Physo136959;rank=4 scaffold_49 . exon 458938 458969 . - . ID=Physo136959.4;Parent=Physo136959;constitutive=1;ensembl_phase=1;rank=4 scaffold_49 . CDS 458995 459266 . - 0 ID=Physo136959;Parent=Physo136959;rank=3 scaffold_49 . exon 458995 459266 . - . ID=Physo136959.3;Parent=Physo136959;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_49 . CDS 459310 459358 . - 0 ID=Physo136959;Parent=Physo136959;rank=2 scaffold_49 . exon 459310 459358 . - . ID=Physo136959.2;Parent=Physo136959;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_49 . CDS 459387 460941 . - 0 ID=Physo136959;Parent=Physo136959;rank=1 scaffold_49 . exon 459387 460941 . - . ID=Physo136959.1;Parent=Physo136959;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_49 ensembl protein_coding_gene 462672 463700 . + . ID=Physo136960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490098;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 462672 463700 . + . ID=Physo136960;Parent=Physo136960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 462672 463700 . + 0 ID=Physo136960;Parent=Physo136960;rank=1 scaffold_49 . exon 462672 463700 . + . ID=Physo136960.1;Parent=Physo136960;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 464429 465565 . - . ID=Physo136961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490099;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 464429 465565 . - . ID=Physo136961;Parent=Physo136961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 464429 465017 . - 0 ID=Physo136961;Parent=Physo136961;rank=2 scaffold_49 . exon 464429 465017 . - . ID=Physo136961.2;Parent=Physo136961;constitutive=1;ensembl_phase=2;rank=2 scaffold_49 . CDS 465549 465565 . - 0 ID=Physo136961;Parent=Physo136961;rank=1 scaffold_49 . exon 465549 465565 . - . ID=Physo136961.1;Parent=Physo136961;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_49 ensembl protein_coding_gene 466226 466591 . + . ID=Physo136962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490100;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 466226 466591 . + . ID=Physo136962;Parent=Physo136962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 466226 466591 . + 0 ID=Physo136962;Parent=Physo136962;rank=1 scaffold_49 . exon 466226 466591 . + . ID=Physo136962.1;Parent=Physo136962;constitutive=1;rank=1 scaffold_49 ensembl protein_coding_gene 469133 470304 . + . ID=Physo136963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490101;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 469133 470304 . + . ID=Physo136963;Parent=Physo136963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 469133 469144 . + 0 ID=Physo136963;Parent=Physo136963;rank=1 scaffold_49 . exon 469133 469144 . + . ID=Physo136963.1;Parent=Physo136963;constitutive=1;rank=1 scaffold_49 . CDS 469171 470304 . + 0 ID=Physo136963;Parent=Physo136963;rank=2 scaffold_49 . exon 469171 470304 . + . ID=Physo136963.2;Parent=Physo136963;constitutive=1;rank=2 scaffold_49 ensembl protein_coding_gene 471197 471610 . - . ID=Physo136964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_490102;logic_name=jgi_physo1_1 scaffold_49 ensembl transcript 471197 471610 . - . ID=Physo136964;Parent=Physo136964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_49 . CDS 471197 471610 . - 0 ID=Physo136964;Parent=Physo136964;rank=1 scaffold_49 . exon 471197 471610 . - . ID=Physo136964.1;Parent=Physo136964;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_51 1 477335 scaffold_51 . repeat_region 397 418 . ? . description=trf scaffold_51 . repeat_region 1376 1495 . ? . description=trf scaffold_51 . repeat_region 4833 4868 . ? . description=trf scaffold_51 . biological_region 5085 5091 0.999 - . logic_name=eponine scaffold_51 . repeat_region 5261 5268 . ? . description=dust scaffold_51 . repeat_region 6993 7042 . ? . description=dust scaffold_51 . repeat_region 7239 7260 . ? . description=trf scaffold_51 . repeat_region 8218 8337 . ? . description=trf scaffold_51 . repeat_region 8598 29834 . ? . description=dust scaffold_51 ensembl protein_coding_gene 2589 3131 . + . ID=Physo137117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510001;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 2589 3131 . + . ID=Physo137117;Parent=Physo137117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 2589 3131 . + 0 ID=Physo137117;Parent=Physo137117;rank=1 scaffold_51 . exon 2589 3131 . + . ID=Physo137117.1;Parent=Physo137117;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 5800 6324 . + . ID=Physo137118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510002;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 5800 6324 . + . ID=Physo137118;Parent=Physo137118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 5800 6324 . + 0 ID=Physo137118;Parent=Physo137118;rank=1 scaffold_51 . exon 5800 6324 . + . ID=Physo137118.1;Parent=Physo137118;constitutive=1;rank=1 scaffold_51 . repeat_region 8598 29834 . ? . description=dust scaffold_51 . repeat_region 29835 33657 . ? . description=dust scaffold_51 . biological_region 37447 37452 0.999 - . logic_name=eponine scaffold_51 . biological_region 37520 37525 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 34076 38320 . + . ID=Physo137119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510003;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 34076 38320 . + . ID=Physo137119;Parent=Physo137119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 34076 34147 . + 0 ID=Physo137119;Parent=Physo137119;rank=1 scaffold_51 . exon 34076 34147 . + . ID=Physo137119.1;Parent=Physo137119;constitutive=1;rank=1 scaffold_51 . CDS 34199 38320 . + 0 ID=Physo137119;Parent=Physo137119;rank=2 scaffold_51 . exon 34199 38320 . + . ID=Physo137119.2;Parent=Physo137119;constitutive=1;rank=2 scaffold_51 . repeat_region 40557 40608 . ? . description=dust scaffold_51 . repeat_region 43748 43755 . ? . description=dust scaffold_51 . repeat_region 43875 43931 . ? . description=dust scaffold_51 . repeat_region 48496 50793 . - . description=GypsyPi-1c_I-int scaffold_51 ensembl protein_coding_gene 47705 52750 . - . ID=Physo137120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510004;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 47705 52750 . - . ID=Physo137120;Parent=Physo137120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 47705 47710 . - 0 ID=Physo137120;Parent=Physo137120;rank=7 scaffold_51 . exon 47705 47710 . - . ID=Physo137120.7;Parent=Physo137120;constitutive=1;rank=7 scaffold_51 . CDS 47769 49846 . - 0 ID=Physo137120;Parent=Physo137120;rank=6 scaffold_51 . exon 47769 49846 . - . ID=Physo137120.6;Parent=Physo137120;constitutive=1;ensembl_phase=1;rank=6 scaffold_51 . CDS 49890 50699 . - 0 ID=Physo137120;Parent=Physo137120;rank=5 scaffold_51 . CDS 50748 51463 . - 0 ID=Physo137120;Parent=Physo137120;rank=4 scaffold_51 . CDS 51747 51967 . - 0 ID=Physo137120;Parent=Physo137120;rank=3 scaffold_51 . CDS 52012 52606 . - 0 ID=Physo137120;Parent=Physo137120;rank=2 scaffold_51 . CDS 52644 52750 . - 0 ID=Physo137120;Parent=Physo137120;rank=1 scaffold_51 . biological_region 50794 50795 0.999 - . logic_name=eponine scaffold_51 . biological_region 50903 50904 0.999 - . logic_name=eponine scaffold_51 . biological_region 51923 51925 0.999 - . logic_name=eponine scaffold_51 . biological_region 51952 51955 0.999 - . logic_name=eponine scaffold_51 . biological_region 51993 52002 0.999 - . logic_name=eponine scaffold_51 . biological_region 56129 56131 0.999 + . logic_name=eponine scaffold_51 . biological_region 58131 58132 0.999 + . logic_name=eponine scaffold_51 . biological_region 58134 58136 0.999 - . logic_name=eponine scaffold_51 . biological_region 59349 59351 0.999 + . logic_name=eponine scaffold_51 . exon 49890 50699 . - . ID=Physo137120.5;Parent=Physo137120;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_51 . exon 50748 51463 . - . ID=Physo137120.4;Parent=Physo137120;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_51 . exon 51747 51967 . - . ID=Physo137120.3;Parent=Physo137120;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_51 . exon 52012 52606 . - . ID=Physo137120.2;Parent=Physo137120;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . exon 52644 52750 . - . ID=Physo137120.1;Parent=Physo137120;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 57579 79817 . - . ID=Physo137121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510005;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 57579 79817 . - . ID=Physo137121;Parent=Physo137121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 57579 79817 . - 0 ID=Physo137121;Parent=Physo137121;rank=1 scaffold_51 . exon 57579 79817 . - . ID=Physo137121.1;Parent=Physo137121;constitutive=1;rank=1 scaffold_51 . biological_region 71206 71206 0.999 + . logic_name=eponine scaffold_51 . biological_region 78651 78651 0.999 - . logic_name=eponine scaffold_51 . biological_region 78991 78995 0.999 + . logic_name=eponine scaffold_51 . biological_region 79015 79020 0.999 + . logic_name=eponine scaffold_51 . biological_region 79039 79044 0.999 + . logic_name=eponine scaffold_51 . biological_region 79076 79078 0.999 + . logic_name=eponine scaffold_51 . biological_region 79119 79122 0.999 - . logic_name=eponine scaffold_51 . biological_region 79232 79236 0.999 + . logic_name=eponine scaffold_51 . biological_region 79241 79243 0.999 - . logic_name=eponine scaffold_51 . biological_region 79295 79304 0.999 + . logic_name=eponine scaffold_51 . biological_region 79304 79309 0.999 - . logic_name=eponine scaffold_51 . biological_region 79324 79326 0.999 - . logic_name=eponine scaffold_51 . biological_region 79354 79358 0.999 - . logic_name=eponine scaffold_51 . biological_region 79365 79371 0.999 - . logic_name=eponine scaffold_51 . biological_region 79559 79562 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 57579 79817 . - . ID=Physo137121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510005;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 57579 79817 . - . ID=Physo137121;Parent=Physo137121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 57579 79817 . - 0 ID=Physo137121;Parent=Physo137121;rank=1 scaffold_51 . exon 57579 79817 . - . ID=Physo137121.1;Parent=Physo137121;constitutive=1;rank=1 scaffold_51 . repeat_region 79785 79803 . ? . description=dust scaffold_51 . repeat_region 80014 80021 . ? . description=dust scaffold_51 . repeat_region 81556 81563 . ? . description=dust scaffold_51 . repeat_region 82356 83332 . ? . description=dust scaffold_51 . repeat_region 84498 84547 . ? . description=dust scaffold_51 . repeat_region 84775 84782 . ? . description=dust scaffold_51 . repeat_region 86317 86324 . ? . description=dust scaffold_51 . repeat_region 87188 87195 . ? . description=dust scaffold_51 ensembl protein_coding_gene 84189 84629 . - . ID=Physo137122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510006;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 84189 84629 . - . ID=Physo137122;Parent=Physo137122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 84189 84493 . - 0 ID=Physo137122;Parent=Physo137122;rank=2 scaffold_51 . exon 84189 84493 . - . ID=Physo137122.2;Parent=Physo137122;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 84620 84629 . - 0 ID=Physo137122;Parent=Physo137122;rank=1 scaffold_51 . exon 84620 84629 . - . ID=Physo137122.1;Parent=Physo137122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . biological_region 89734 89736 0.999 + . logic_name=eponine scaffold_51 . biological_region 89803 89806 0.999 + . logic_name=eponine scaffold_51 . biological_region 89868 89871 0.999 - . logic_name=eponine scaffold_51 . repeat_region 90403 92694 . + . description=GypsyPi-1c_I-int scaffold_51 . biological_region 91733 91734 0.999 + . logic_name=eponine scaffold_51 . biological_region 92188 92189 0.999 + . logic_name=eponine scaffold_51 . biological_region 92556 92556 0.999 - . logic_name=eponine scaffold_51 . repeat_region 93016 93296 . + . description=GypsyPi-1c_I-int scaffold_51 . biological_region 93845 93849 0.999 + . logic_name=eponine scaffold_51 . biological_region 93919 93923 0.999 - . logic_name=eponine scaffold_51 . biological_region 93939 93945 0.999 - . logic_name=eponine scaffold_51 . biological_region 93958 93958 0.999 - . logic_name=eponine scaffold_51 . biological_region 97361 97366 0.999 - . logic_name=eponine scaffold_51 . repeat_region 97490 97546 . ? . description=trf scaffold_51 . biological_region 97533 97537 0.999 + . logic_name=eponine scaffold_51 . biological_region 98348 98352 0.999 - . logic_name=eponine scaffold_51 . biological_region 98419 98423 0.999 - . logic_name=eponine scaffold_51 ensembl protein_coding_gene 89727 93058 . + . ID=Physo137123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510007;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 89727 93058 . + . ID=Physo137123;Parent=Physo137123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 89727 89988 . + 0 ID=Physo137123;Parent=Physo137123;rank=1 scaffold_51 . exon 89727 89988 . + . ID=Physo137123.1;Parent=Physo137123;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 90174 91795 . + 0 ID=Physo137123;Parent=Physo137123;rank=2 scaffold_51 . exon 90174 91795 . + . ID=Physo137123.2;Parent=Physo137123;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 91858 92193 . + 0 ID=Physo137123;Parent=Physo137123;rank=3 scaffold_51 . exon 91858 92193 . + . ID=Physo137123.3;Parent=Physo137123;constitutive=1;rank=3 scaffold_51 . CDS 92272 92361 . + 0 ID=Physo137123;Parent=Physo137123;rank=4 scaffold_51 . exon 92272 92361 . + . ID=Physo137123.4;Parent=Physo137123;constitutive=1;rank=4 scaffold_51 . CDS 92547 92654 . + 0 ID=Physo137123;Parent=Physo137123;rank=5 scaffold_51 . exon 92547 92654 . + . ID=Physo137123.5;Parent=Physo137123;constitutive=1;rank=5 scaffold_51 . CDS 92780 93058 . + 0 ID=Physo137123;Parent=Physo137123;rank=6 scaffold_51 . exon 92780 93058 . + . ID=Physo137123.6;Parent=Physo137123;constitutive=1;rank=6 scaffold_51 ensembl protein_coding_gene 95225 95675 . - . ID=Physo137124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510008;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 95225 95675 . - . ID=Physo137124;Parent=Physo137124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 95225 95524 . - 0 ID=Physo137124;Parent=Physo137124;rank=2 scaffold_51 . exon 95225 95524 . - . ID=Physo137124.2;Parent=Physo137124;constitutive=1;rank=2 scaffold_51 . CDS 95604 95675 . - 0 ID=Physo137124;Parent=Physo137124;rank=1 scaffold_51 . exon 95604 95675 . - . ID=Physo137124.1;Parent=Physo137124;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 97446 103374 . - . ID=Physo137125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510009;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 97446 103374 . - . ID=Physo137125;Parent=Physo137125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 97446 97808 . - 0 ID=Physo137125;Parent=Physo137125;rank=14 scaffold_51 . exon 97446 97808 . - . ID=Physo137125.14;Parent=Physo137125;constitutive=1;rank=14 scaffold_51 . CDS 97834 98255 . - 0 ID=Physo137125;Parent=Physo137125;rank=13 scaffold_51 . exon 97834 98255 . - . ID=Physo137125.13;Parent=Physo137125;constitutive=1;ensembl_phase=1;rank=13 scaffold_51 . CDS 98325 98755 . - 0 ID=Physo137125;Parent=Physo137125;rank=12 scaffold_51 . exon 98325 98755 . - . ID=Physo137125.12;Parent=Physo137125;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_51 . CDS 98957 99161 . - 0 ID=Physo137125;Parent=Physo137125;rank=11 scaffold_51 . exon 98957 99161 . - . ID=Physo137125.11;Parent=Physo137125;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_51 . CDS 99353 99462 . - 0 ID=Physo137125;Parent=Physo137125;rank=10 scaffold_51 . exon 99353 99462 . - . ID=Physo137125.10;Parent=Physo137125;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_51 . CDS 99776 100331 . - 0 ID=Physo137125;Parent=Physo137125;rank=9 scaffold_51 . CDS 100356 100460 . - 0 ID=Physo137125;Parent=Physo137125;rank=8 scaffold_51 . CDS 100494 100600 . - 0 ID=Physo137125;Parent=Physo137125;rank=7 scaffold_51 . CDS 100655 101154 . - 0 ID=Physo137125;Parent=Physo137125;rank=6 scaffold_51 . CDS 101255 101857 . - 0 ID=Physo137125;Parent=Physo137125;rank=5 scaffold_51 . CDS 101943 102012 . - 0 ID=Physo137125;Parent=Physo137125;rank=4 scaffold_51 . CDS 102047 102355 . - 0 ID=Physo137125;Parent=Physo137125;rank=3 scaffold_51 . CDS 102375 102793 . - 0 ID=Physo137125;Parent=Physo137125;rank=2 scaffold_51 . CDS 102820 103374 . - 0 ID=Physo137125;Parent=Physo137125;rank=1 scaffold_51 . repeat_region 107329 107378 . ? . description=dust scaffold_51 . exon 99776 100331 . - . ID=Physo137125.9;Parent=Physo137125;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_51 . exon 100356 100460 . - . ID=Physo137125.8;Parent=Physo137125;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_51 . exon 100494 100600 . - . ID=Physo137125.7;Parent=Physo137125;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_51 . exon 100655 101154 . - . ID=Physo137125.6;Parent=Physo137125;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_51 . exon 101255 101857 . - . ID=Physo137125.5;Parent=Physo137125;constitutive=1;rank=5 scaffold_51 . exon 101943 102012 . - . ID=Physo137125.4;Parent=Physo137125;constitutive=1;ensembl_phase=2;rank=4 scaffold_51 . exon 102047 102355 . - . ID=Physo137125.3;Parent=Physo137125;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_51 . exon 102375 102793 . - . ID=Physo137125.2;Parent=Physo137125;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . exon 102820 103374 . - . ID=Physo137125.1;Parent=Physo137125;constitutive=1;rank=1 scaffold_51 . repeat_region 111115 111167 . ? . description=trf scaffold_51 . biological_region 111873 111877 0.999 + . logic_name=eponine scaffold_51 . biological_region 112130 112133 0.999 + . logic_name=eponine scaffold_51 . biological_region 112244 112257 0.999 - . logic_name=eponine scaffold_51 . biological_region 112629 112632 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 111688 112371 . - . ID=Physo137126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510010;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 111688 112371 . - . ID=Physo137126;Parent=Physo137126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 111688 112371 . - 0 ID=Physo137126;Parent=Physo137126;rank=1 scaffold_51 . exon 111688 112371 . - . ID=Physo137126.1;Parent=Physo137126;constitutive=1;rank=1 scaffold_51 . repeat_region 119337 122100 . ? . description=dust scaffold_51 . repeat_region 122808 122857 . ? . description=dust scaffold_51 ensembl protein_coding_gene 122892 125813 . + . ID=Physo137127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510011;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 122892 125813 . + . ID=Physo137127;Parent=Physo137127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 122892 125813 . + 0 ID=Physo137127;Parent=Physo137127;rank=1 scaffold_51 . exon 122892 125813 . + . ID=Physo137127.1;Parent=Physo137127;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 127784 129483 . + . ID=Physo137128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510012;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 127784 129483 . + . ID=Physo137128;Parent=Physo137128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 127784 129483 . + . ID=Physo137128.1;Parent=Physo137128;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_51 . CDS 127914 129230 . + 0 ID=Physo137128;Parent=Physo137128;rank=1 scaffold_51 . repeat_region 129987 130014 . ? . description=trf scaffold_51 . repeat_region 131440 131494 . ? . description=trf scaffold_51 . biological_region 132568 132572 0.999 + . logic_name=eponine scaffold_51 . biological_region 132622 132624 0.999 + . logic_name=eponine scaffold_51 . biological_region 132649 132652 0.999 - . logic_name=eponine scaffold_51 . biological_region 132684 132692 0.999 - . logic_name=eponine scaffold_51 . biological_region 132687 132691 0.999 + . logic_name=eponine scaffold_51 . biological_region 132741 132745 0.999 + . logic_name=eponine scaffold_51 . biological_region 132838 132838 0.999 + . logic_name=eponine scaffold_51 . biological_region 132846 132848 0.999 + . logic_name=eponine scaffold_51 . biological_region 132956 132961 0.999 - . logic_name=eponine scaffold_51 . biological_region 133006 133011 0.999 + . logic_name=eponine scaffold_51 . repeat_region 133219 133295 . ? . description=trf scaffold_51 . biological_region 133383 133389 0.999 + . logic_name=eponine scaffold_51 . biological_region 133478 133482 0.999 - . logic_name=eponine scaffold_51 . repeat_region 134365 134389 . ? . description=trf scaffold_51 ensembl protein_coding_gene 132654 135275 . + . ID=Physo137129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510013;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 132654 135275 . + . ID=Physo137129;Parent=Physo137129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 132654 135275 . + 0 ID=Physo137129;Parent=Physo137129;rank=1 scaffold_51 . exon 132654 135275 . + . ID=Physo137129.1;Parent=Physo137129;constitutive=1;rank=1 scaffold_51 . repeat_region 143130 143168 . ? . description=dust scaffold_51 ensembl protein_coding_gene 140387 141546 . - . ID=Physo109001;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_510001;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 140387 141546 . - . ID=Physo109001;Parent=Physo109001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 140387 141546 . - . ID=Physo109001.1;Parent=Physo109001;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_51 . CDS 140475 141497 . - 0 ID=Physo109001;Parent=Physo109001;rank=1 scaffold_51 ensembl protein_coding_gene 145611 146769 . - . ID=Physo109002;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_510002;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 145611 146769 . - . ID=Physo109002;Parent=Physo109002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 145611 146769 . - . ID=Physo109002.1;Parent=Physo109002;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_51 . CDS 145699 146721 . - 0 ID=Physo109002;Parent=Physo109002;rank=1 scaffold_51 ensembl protein_coding_gene 148443 152147 . + . ID=Physo109003;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_510003;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 148443 152147 . + . ID=Physo109003;Parent=Physo109003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 148443 148580 . + . ID=Physo109003.1;Parent=Physo109003;constitutive=1;ensembl_phase=-1;rank=1 scaffold_51 . CDS 148491 148580 . + 0 ID=Physo109003;Parent=Physo109003;rank=1 scaffold_51 . CDS 150998 151930 . + 0 ID=Physo109003;Parent=Physo109003;rank=2 scaffold_51 ensembl protein_coding_gene 143217 144111 . + . ID=Physo137131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510015;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 143217 144111 . + . ID=Physo137131;Parent=Physo137131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 143217 143495 . + 0 ID=Physo137131;Parent=Physo137131;rank=1 scaffold_51 . exon 143217 143495 . + . ID=Physo137131.1;Parent=Physo137131;constitutive=1;rank=1 scaffold_51 . CDS 143516 144085 . + 0 ID=Physo137131;Parent=Physo137131;rank=2 scaffold_51 . exon 143516 144085 . + . ID=Physo137131.2;Parent=Physo137131;constitutive=1;rank=2 scaffold_51 . CDS 144106 144111 . + 0 ID=Physo137131;Parent=Physo137131;rank=3 scaffold_51 . exon 144106 144111 . + . ID=Physo137131.3;Parent=Physo137131;constitutive=1;rank=3 scaffold_51 . biological_region 152545 152562 0.999 + . logic_name=eponine scaffold_51 . biological_region 152598 152604 0.999 + . logic_name=eponine scaffold_51 . biological_region 152702 152712 0.999 - . logic_name=eponine scaffold_51 . biological_region 152726 152730 0.999 - . logic_name=eponine scaffold_51 . biological_region 152997 152998 0.999 + . logic_name=eponine scaffold_51 . biological_region 153052 153054 0.999 - . logic_name=eponine scaffold_51 . biological_region 153107 153111 0.999 + . logic_name=eponine scaffold_51 . biological_region 155554 155559 0.999 + . logic_name=eponine scaffold_51 . repeat_region 156719 156743 . ? . description=trf scaffold_51 . biological_region 158028 158031 0.999 - . logic_name=eponine scaffold_51 . exon 150998 152147 . + . ID=Physo109003.2;Parent=Physo109003;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_51 ensembl protein_coding_gene 158920 159685 . - . ID=Physo109005;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_510005;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 158920 159685 . - . ID=Physo109005;Parent=Physo109005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 158920 159562 . - . ID=Physo109005.2;Parent=Physo109005;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_51 . CDS 159153 159562 . - 0 ID=Physo109005;Parent=Physo109005;rank=2 scaffold_51 . CDS 159650 159665 . - 0 ID=Physo109005;Parent=Physo109005;rank=1 scaffold_51 ensembl protein_coding_gene 152564 156300 . + . ID=Physo137135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510019;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 152564 156300 . + . ID=Physo137135;Parent=Physo137135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 152564 153898 . + 0 ID=Physo137135;Parent=Physo137135;rank=1 scaffold_51 . exon 152564 153898 . + . ID=Physo137135.1;Parent=Physo137135;constitutive=1;rank=1 scaffold_51 . CDS 153970 154131 . + 0 ID=Physo137135;Parent=Physo137135;rank=2 scaffold_51 . exon 153970 154131 . + . ID=Physo137135.2;Parent=Physo137135;constitutive=1;rank=2 scaffold_51 . CDS 154546 154718 . + 0 ID=Physo137135;Parent=Physo137135;rank=3 scaffold_51 . exon 154546 154718 . + . ID=Physo137135.3;Parent=Physo137135;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_51 . CDS 154792 154858 . + 0 ID=Physo137135;Parent=Physo137135;rank=4 scaffold_51 . exon 154792 154858 . + . ID=Physo137135.4;Parent=Physo137135;constitutive=1;ensembl_phase=2;rank=4 scaffold_51 . CDS 154928 155187 . + 0 ID=Physo137135;Parent=Physo137135;rank=5 scaffold_51 . exon 154928 155187 . + . ID=Physo137135.5;Parent=Physo137135;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_51 . CDS 155265 156300 . + 0 ID=Physo137135;Parent=Physo137135;rank=6 scaffold_51 . exon 155265 156300 . + . ID=Physo137135.6;Parent=Physo137135;constitutive=1;ensembl_phase=2;rank=6 scaffold_51 ensembl protein_coding_gene 156591 158885 . + . ID=Physo137136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510020;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 156591 158885 . + . ID=Physo137136;Parent=Physo137136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 156591 158885 . + 0 ID=Physo137136;Parent=Physo137136;rank=1 scaffold_51 . exon 156591 158885 . + . ID=Physo137136.1;Parent=Physo137136;constitutive=1;rank=1 scaffold_51 . repeat_region 159629 159638 . ? . description=dust scaffold_51 . repeat_region 162621 162664 . ? . description=dust scaffold_51 . repeat_region 164403 164444 . ? . description=dust scaffold_51 . exon 159650 159685 . - . ID=Physo109005.1;Parent=Physo109005;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_51 ensembl protein_coding_gene 161311 162297 . - . ID=Physo109006;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_510006;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 161311 162297 . - . ID=Physo109006;Parent=Physo109006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 161311 162082 . - . ID=Physo109006.2;Parent=Physo109006;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_51 . CDS 161481 162082 . - 0 ID=Physo109006;Parent=Physo109006;rank=2 scaffold_51 . CDS 162175 162283 . - 0 ID=Physo109006;Parent=Physo109006;rank=1 scaffold_51 . exon 162175 162297 . - . ID=Physo109006.1;Parent=Physo109006;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_51 ensembl protein_coding_gene 162754 163714 . - . ID=Physo118341;biotype=protein_coding;external_name=estExt_Genewise1.C_510062;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 162754 163714 . - . ID=Physo118341;Parent=Physo118341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 162754 162905 . - . ID=Physo118341.4;Parent=Physo118341;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_51 . CDS 162817 162905 . - 0 ID=Physo118341;Parent=Physo118341;rank=4 scaffold_51 . CDS 162999 163087 . - 0 ID=Physo118341;Parent=Physo118341;rank=3 scaffold_51 . exon 162999 163087 . - . ID=Physo118341.3;Parent=Physo118341;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 163174 163358 . - 0 ID=Physo118341;Parent=Physo118341;rank=2 scaffold_51 . exon 163174 163358 . - . ID=Physo118341.2;Parent=Physo118341;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . CDS 163456 163647 . - 0 ID=Physo118341;Parent=Physo118341;rank=1 scaffold_51 . exon 163456 163714 . - . ID=Physo118341.1;Parent=Physo118341;constitutive=1;ensembl_phase=-1;rank=1 scaffold_51 ensembl protein_coding_gene 159936 161274 . + . ID=Physo137138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510022;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 159936 161274 . + . ID=Physo137138;Parent=Physo137138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 159936 160010 . + 0 ID=Physo137138;Parent=Physo137138;rank=1 scaffold_51 . exon 159936 160010 . + . ID=Physo137138.1;Parent=Physo137138;constitutive=1;rank=1 scaffold_51 . CDS 160093 161274 . + 0 ID=Physo137138;Parent=Physo137138;rank=2 scaffold_51 . exon 160093 161274 . + . ID=Physo137138.2;Parent=Physo137138;constitutive=1;rank=2 scaffold_51 ensembl protein_coding_gene 164204 173184 . + . ID=Physo137141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510025;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 164204 173184 . + . ID=Physo137141;Parent=Physo137141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 164204 167314 . + 0 ID=Physo137141;Parent=Physo137141;rank=1 scaffold_51 . exon 164204 167314 . + . ID=Physo137141.1;Parent=Physo137141;constitutive=1;rank=1 scaffold_51 . CDS 167646 170179 . + 0 ID=Physo137141;Parent=Physo137141;rank=2 scaffold_51 . exon 167646 170179 . + . ID=Physo137141.2;Parent=Physo137141;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . CDS 170254 170677 . + 0 ID=Physo137141;Parent=Physo137141;rank=3 scaffold_51 . CDS 170750 170899 . + 0 ID=Physo137141;Parent=Physo137141;rank=4 scaffold_51 . CDS 170977 173184 . + 0 ID=Physo137141;Parent=Physo137141;rank=5 scaffold_51 . repeat_region 169309 169335 . ? . description=trf scaffold_51 . repeat_region 169772 169876 . + . description=(CAG)n scaffold_51 . repeat_region 172297 172320 . ? . description=trf scaffold_51 . biological_region 172869 172870 0.999 - . logic_name=eponine scaffold_51 . biological_region 172955 172961 0.999 - . logic_name=eponine scaffold_51 . repeat_region 173346 173367 . ? . description=trf scaffold_51 . biological_region 174212 174213 0.999 + . logic_name=eponine scaffold_51 . biological_region 175728 175729 0.999 + . logic_name=eponine scaffold_51 . biological_region 175945 175949 0.999 + . logic_name=eponine scaffold_51 . biological_region 175959 175962 0.999 - . logic_name=eponine scaffold_51 . biological_region 176833 176838 0.999 + . logic_name=eponine scaffold_51 . biological_region 176956 176959 0.999 + . logic_name=eponine scaffold_51 . biological_region 176963 176966 0.999 + . logic_name=eponine scaffold_51 . biological_region 176981 176986 0.999 + . logic_name=eponine scaffold_51 . biological_region 177010 177015 0.999 + . logic_name=eponine scaffold_51 . biological_region 177077 177079 0.999 - . logic_name=eponine scaffold_51 . biological_region 177339 177341 0.999 + . logic_name=eponine scaffold_51 . exon 170254 170677 . + . ID=Physo137141.3;Parent=Physo137141;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . exon 170750 170899 . + . ID=Physo137141.4;Parent=Physo137141;constitutive=1;rank=4 scaffold_51 . exon 170977 173184 . + . ID=Physo137141.5;Parent=Physo137141;constitutive=1;rank=5 scaffold_51 ensembl protein_coding_gene 173245 176134 . - . ID=Physo137142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510026;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 173245 176134 . - . ID=Physo137142;Parent=Physo137142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 173245 173510 . - . ID=Physo137142.5;Parent=Physo137142;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_51 . CDS 173382 173510 . - 0 ID=Physo137142;Parent=Physo137142;rank=5 scaffold_51 . CDS 173587 173739 . - 0 ID=Physo137142;Parent=Physo137142;rank=4 scaffold_51 . exon 173587 173739 . - . ID=Physo137142.4;Parent=Physo137142;constitutive=1;rank=4 scaffold_51 . CDS 173852 173860 . - 0 ID=Physo137142;Parent=Physo137142;rank=3 scaffold_51 . exon 173852 173860 . - . ID=Physo137142.3;Parent=Physo137142;constitutive=1;rank=3 scaffold_51 . CDS 174036 174908 . - 0 ID=Physo137142;Parent=Physo137142;rank=2 scaffold_51 . exon 174036 174908 . - . ID=Physo137142.2;Parent=Physo137142;constitutive=1;rank=2 scaffold_51 . CDS 174980 176134 . - 0 ID=Physo137142;Parent=Physo137142;rank=1 scaffold_51 . exon 174980 176134 . - . ID=Physo137142.1;Parent=Physo137142;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 177434 179364 . + . ID=Physo137143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510027;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 177434 179364 . + . ID=Physo137143;Parent=Physo137143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 177434 177741 . + . ID=Physo137143.1;Parent=Physo137143;constitutive=1;ensembl_phase=-1;rank=1 scaffold_51 . CDS 177577 177741 . + 0 ID=Physo137143;Parent=Physo137143;rank=1 scaffold_51 . CDS 177862 178053 . + 0 ID=Physo137143;Parent=Physo137143;rank=2 scaffold_51 . exon 177862 178053 . + . ID=Physo137143.2;Parent=Physo137143;constitutive=1;rank=2 scaffold_51 . CDS 178146 178686 . + 0 ID=Physo137143;Parent=Physo137143;rank=3 scaffold_51 . exon 178146 178686 . + . ID=Physo137143.3;Parent=Physo137143;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_51 . CDS 178760 179364 . + 0 ID=Physo137143;Parent=Physo137143;rank=4 scaffold_51 . exon 178760 179364 . + . ID=Physo137143.4;Parent=Physo137143;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 . repeat_region 187520 187539 . ? . description=dust scaffold_51 . repeat_region 187715 188154 . ? . description=dust scaffold_51 ensembl protein_coding_gene 179861 181728 . - . ID=Physo137144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510028;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 179861 181728 . - . ID=Physo137144;Parent=Physo137144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 179861 180120 . - 0 ID=Physo137144;Parent=Physo137144;rank=8 scaffold_51 . exon 179861 180120 . - . ID=Physo137144.8;Parent=Physo137144;constitutive=1;ensembl_phase=1;rank=8 scaffold_51 . CDS 180273 180377 . - 0 ID=Physo137144;Parent=Physo137144;rank=7 scaffold_51 . exon 180273 180377 . - . ID=Physo137144.7;Parent=Physo137144;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_51 . CDS 180506 180705 . - 0 ID=Physo137144;Parent=Physo137144;rank=6 scaffold_51 . exon 180506 180705 . - . ID=Physo137144.6;Parent=Physo137144;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_51 . CDS 180791 180942 . - 0 ID=Physo137144;Parent=Physo137144;rank=5 scaffold_51 . exon 180791 180942 . - . ID=Physo137144.5;Parent=Physo137144;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_51 . CDS 181029 181101 . - 0 ID=Physo137144;Parent=Physo137144;rank=4 scaffold_51 . exon 181029 181101 . - . ID=Physo137144.4;Parent=Physo137144;constitutive=1;ensembl_phase=2;rank=4 scaffold_51 . CDS 181175 181305 . - 0 ID=Physo137144;Parent=Physo137144;rank=3 scaffold_51 . exon 181175 181305 . - . ID=Physo137144.3;Parent=Physo137144;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_51 . CDS 181372 181577 . - 0 ID=Physo137144;Parent=Physo137144;rank=2 scaffold_51 . exon 181372 181577 . - . ID=Physo137144.2;Parent=Physo137144;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 181662 181728 . - 0 ID=Physo137144;Parent=Physo137144;rank=1 scaffold_51 . exon 181662 181728 . - . ID=Physo137144.1;Parent=Physo137144;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 182591 183649 . + . ID=Physo137145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510029;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 182591 183649 . + . ID=Physo137145;Parent=Physo137145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 182591 183649 . + 0 ID=Physo137145;Parent=Physo137145;rank=1 scaffold_51 . exon 182591 183649 . + . ID=Physo137145.1;Parent=Physo137145;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 183758 186797 . - . ID=Physo137146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510030;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 183758 186797 . - . ID=Physo137146;Parent=Physo137146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 183758 186391 . - 0 ID=Physo137146;Parent=Physo137146;rank=3 scaffold_51 . exon 183758 186391 . - . ID=Physo137146.3;Parent=Physo137146;constitutive=1;rank=3 scaffold_51 . CDS 186469 186621 . - 0 ID=Physo137146;Parent=Physo137146;rank=2 scaffold_51 . exon 186469 186621 . - . ID=Physo137146.2;Parent=Physo137146;constitutive=1;rank=2 scaffold_51 . CDS 186732 186797 . - 0 ID=Physo137146;Parent=Physo137146;rank=1 scaffold_51 . exon 186732 186797 . - . ID=Physo137146.1;Parent=Physo137146;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 188174 191478 . + . ID=Physo137147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510031;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 188174 191478 . + . ID=Physo137147;Parent=Physo137147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 188174 188228 . + 0 ID=Physo137147;Parent=Physo137147;rank=1 scaffold_51 . exon 188174 188228 . + . ID=Physo137147.1;Parent=Physo137147;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 188368 188568 . + 0 ID=Physo137147;Parent=Physo137147;rank=2 scaffold_51 . exon 188368 188568 . + . ID=Physo137147.2;Parent=Physo137147;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 188708 188908 . + 0 ID=Physo137147;Parent=Physo137147;rank=3 scaffold_51 . exon 188708 188908 . + . ID=Physo137147.3;Parent=Physo137147;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 189048 189196 . + 0 ID=Physo137147;Parent=Physo137147;rank=4 scaffold_51 . CDS 189262 189304 . + 0 ID=Physo137147;Parent=Physo137147;rank=5 scaffold_51 . CDS 189388 189536 . + 0 ID=Physo137147;Parent=Physo137147;rank=6 scaffold_51 . CDS 189602 189644 . + 0 ID=Physo137147;Parent=Physo137147;rank=7 scaffold_51 . CDS 189728 189876 . + 0 ID=Physo137147;Parent=Physo137147;rank=8 scaffold_51 . CDS 189942 189984 . + 0 ID=Physo137147;Parent=Physo137147;rank=9 scaffold_51 . CDS 190068 190216 . + 0 ID=Physo137147;Parent=Physo137147;rank=10 scaffold_51 . CDS 190282 190324 . + 0 ID=Physo137147;Parent=Physo137147;rank=11 scaffold_51 . CDS 190408 190556 . + 0 ID=Physo137147;Parent=Physo137147;rank=12 scaffold_51 . CDS 190622 190664 . + 0 ID=Physo137147;Parent=Physo137147;rank=13 scaffold_51 . CDS 190748 190896 . + 0 ID=Physo137147;Parent=Physo137147;rank=14 scaffold_51 . CDS 190962 191004 . + 0 ID=Physo137147;Parent=Physo137147;rank=15 scaffold_51 . CDS 191088 191356 . + 0 ID=Physo137147;Parent=Physo137147;rank=16 scaffold_51 . CDS 191434 191478 . + 0 ID=Physo137147;Parent=Physo137147;rank=17 scaffold_51 . repeat_region 188155 191358 . ? . description=trf scaffold_51 . biological_region 189245 189246 0.999 + . logic_name=eponine scaffold_51 . biological_region 189585 189586 0.999 + . logic_name=eponine scaffold_51 . biological_region 189925 189926 0.999 + . logic_name=eponine scaffold_51 . biological_region 190265 190266 0.999 + . logic_name=eponine scaffold_51 . biological_region 190605 190606 0.999 + . logic_name=eponine scaffold_51 . biological_region 190945 190946 0.999 + . logic_name=eponine scaffold_51 . biological_region 191284 191288 0.999 + . logic_name=eponine scaffold_51 . biological_region 191420 191426 0.999 - . logic_name=eponine scaffold_51 . repeat_region 192912 192939 . ? . description=trf scaffold_51 . exon 189048 189196 . + . ID=Physo137147.4;Parent=Physo137147;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 . exon 189262 189304 . + . ID=Physo137147.5;Parent=Physo137147;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_51 . exon 189388 189536 . + . ID=Physo137147.6;Parent=Physo137147;constitutive=1;ensembl_phase=1;rank=6 scaffold_51 . exon 189602 189644 . + . ID=Physo137147.7;Parent=Physo137147;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_51 . exon 189728 189876 . + . ID=Physo137147.8;Parent=Physo137147;constitutive=1;ensembl_phase=1;rank=8 scaffold_51 . exon 189942 189984 . + . ID=Physo137147.9;Parent=Physo137147;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_51 . exon 190068 190216 . + . ID=Physo137147.10;Parent=Physo137147;constitutive=1;ensembl_phase=1;rank=10 scaffold_51 . exon 190282 190324 . + . ID=Physo137147.11;Parent=Physo137147;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_51 . exon 190408 190556 . + . ID=Physo137147.12;Parent=Physo137147;constitutive=1;ensembl_phase=1;rank=12 scaffold_51 . exon 190622 190664 . + . ID=Physo137147.13;Parent=Physo137147;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_51 . exon 190748 190896 . + . ID=Physo137147.14;Parent=Physo137147;constitutive=1;ensembl_phase=1;rank=14 scaffold_51 . exon 190962 191004 . + . ID=Physo137147.15;Parent=Physo137147;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_51 . exon 191088 191356 . + . ID=Physo137147.16;Parent=Physo137147;constitutive=1;ensembl_phase=1;rank=16 scaffold_51 . exon 191434 191478 . + . ID=Physo137147.17;Parent=Physo137147;constitutive=1;rank=17 scaffold_51 . repeat_region 194754 208838 . ? . description=dust scaffold_51 . repeat_region 208839 209817 . ? . description=dust scaffold_51 . biological_region 209987 209990 0.999 - . logic_name=eponine scaffold_51 . biological_region 210003 210008 0.999 - . logic_name=eponine scaffold_51 . repeat_region 212207 212271 . ? . description=trf scaffold_51 . biological_region 214345 214352 0.999 + . logic_name=eponine scaffold_51 . biological_region 214420 214421 0.999 + . logic_name=eponine scaffold_51 . biological_region 214464 214468 0.999 - . logic_name=eponine scaffold_51 . biological_region 214489 214491 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 211075 214180 . + . ID=Physo137148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510032;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 211075 214180 . + . ID=Physo137148;Parent=Physo137148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 211075 211257 . + 0 ID=Physo137148;Parent=Physo137148;rank=1 scaffold_51 . exon 211075 211257 . + . ID=Physo137148.1;Parent=Physo137148;constitutive=1;rank=1 scaffold_51 . CDS 211339 211575 . + 0 ID=Physo137148;Parent=Physo137148;rank=2 scaffold_51 . exon 211339 211575 . + . ID=Physo137148.2;Parent=Physo137148;constitutive=1;rank=2 scaffold_51 . CDS 211815 213938 . + 0 ID=Physo137148;Parent=Physo137148;rank=3 scaffold_51 . exon 211815 214180 . + . ID=Physo137148.3;Parent=Physo137148;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_51 ensembl protein_coding_gene 214157 215407 . - . ID=Physo137149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510033;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 214157 215407 . - . ID=Physo137149;Parent=Physo137149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 214157 214728 . - . ID=Physo137149.2;Parent=Physo137149;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_51 . CDS 214258 214728 . - 0 ID=Physo137149;Parent=Physo137149;rank=2 scaffold_51 . CDS 215360 215407 . - 0 ID=Physo137149;Parent=Physo137149;rank=1 scaffold_51 . exon 215360 215407 . - . ID=Physo137149.1;Parent=Physo137149;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 215771 216471 . + . ID=Physo137150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510034;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 215771 216471 . + . ID=Physo137150;Parent=Physo137150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 215771 215799 . + 0 ID=Physo137150;Parent=Physo137150;rank=1 scaffold_51 . exon 215771 215799 . + . ID=Physo137150.1;Parent=Physo137150;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 215859 216090 . + 0 ID=Physo137150;Parent=Physo137150;rank=2 scaffold_51 . exon 215859 216090 . + . ID=Physo137150.2;Parent=Physo137150;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 216152 216213 . + 0 ID=Physo137150;Parent=Physo137150;rank=3 scaffold_51 . exon 216152 216213 . + . ID=Physo137150.3;Parent=Physo137150;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_51 . CDS 216255 216471 . + 0 ID=Physo137150;Parent=Physo137150;rank=4 scaffold_51 . exon 216255 216471 . + . ID=Physo137150.4;Parent=Physo137150;constitutive=1;ensembl_phase=2;rank=4 scaffold_51 ensembl protein_coding_gene 222054 223352 . + . ID=Physo137151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510035;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 222054 223352 . + . ID=Physo137151;Parent=Physo137151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 222054 222166 . + 0 ID=Physo137151;Parent=Physo137151;rank=1 scaffold_51 . exon 222054 222166 . + . ID=Physo137151.1;Parent=Physo137151;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 222333 222506 . + 0 ID=Physo137151;Parent=Physo137151;rank=2 scaffold_51 . exon 222333 222506 . + . ID=Physo137151.2;Parent=Physo137151;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_51 . CDS 222673 222796 . + 0 ID=Physo137151;Parent=Physo137151;rank=3 scaffold_51 . exon 222673 222796 . + . ID=Physo137151.3;Parent=Physo137151;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 222862 222904 . + 0 ID=Physo137151;Parent=Physo137151;rank=4 scaffold_51 . exon 222862 222904 . + . ID=Physo137151.4;Parent=Physo137151;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_51 . CDS 222988 223352 . + 0 ID=Physo137151;Parent=Physo137151;rank=5 scaffold_51 . exon 222988 223352 . + . ID=Physo137151.5;Parent=Physo137151;constitutive=1;ensembl_phase=1;rank=5 scaffold_51 ensembl protein_coding_gene 226345 227456 . + . ID=Physo157538;biotype=protein_coding;external_name=C_scaffold_51000004;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 226345 227456 . + . ID=Physo157538;Parent=Physo157538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 226345 226371 . + 0 ID=Physo157538;Parent=Physo157538;rank=1 scaffold_51 . exon 226345 226371 . + . ID=Physo157538.1;Parent=Physo157538;constitutive=1;rank=1 scaffold_51 . CDS 226446 226855 . + 0 ID=Physo157538;Parent=Physo157538;rank=2 scaffold_51 . exon 226446 226855 . + . ID=Physo157538.2;Parent=Physo157538;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . CDS 226928 227099 . + 0 ID=Physo157538;Parent=Physo157538;rank=3 scaffold_51 . exon 226928 227099 . + . ID=Physo157538.3;Parent=Physo157538;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 227391 227456 . + 0 ID=Physo157538;Parent=Physo157538;rank=4 scaffold_51 . exon 227391 227456 . + . ID=Physo157538.4;Parent=Physo157538;constitutive=1;rank=4 scaffold_51 ensembl protein_coding_gene 228279 228908 . - . ID=Physo157539;biotype=protein_coding;external_name=C_scaffold_51000005;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 228279 228908 . - . ID=Physo157539;Parent=Physo157539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 228279 228519 . - 0 ID=Physo157539;Parent=Physo157539;rank=3 scaffold_51 . exon 228279 228519 . - . ID=Physo157539.3;Parent=Physo157539;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 228601 228824 . - 0 ID=Physo157539;Parent=Physo157539;rank=2 scaffold_51 . exon 228601 228824 . - . ID=Physo157539.2;Parent=Physo157539;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . CDS 228906 228908 . - 0 ID=Physo157539;Parent=Physo157539;rank=1 scaffold_51 . biological_region 229332 229336 0.999 - . logic_name=eponine scaffold_51 . repeat_region 229609 229632 . ? . description=trf scaffold_51 . repeat_region 229609 229632 . ? . description=dust scaffold_51 . biological_region 231868 231873 0.999 + . logic_name=eponine scaffold_51 . repeat_region 234937 234944 . ? . description=dust scaffold_51 ensembl protein_coding_gene 229950 237034 . + . ID=Physo137154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510038;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 229950 237034 . + . ID=Physo137154;Parent=Physo137154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 229950 230123 . + 0 ID=Physo137154;Parent=Physo137154;rank=1 scaffold_51 . exon 229950 230123 . + . ID=Physo137154.1;Parent=Physo137154;constitutive=1;rank=1 scaffold_51 . CDS 230180 230278 . + 0 ID=Physo137154;Parent=Physo137154;rank=2 scaffold_51 . exon 230180 230278 . + . ID=Physo137154.2;Parent=Physo137154;constitutive=1;rank=2 scaffold_51 . CDS 230317 230340 . + 0 ID=Physo137154;Parent=Physo137154;rank=3 scaffold_51 . exon 230317 230340 . + . ID=Physo137154.3;Parent=Physo137154;constitutive=1;rank=3 scaffold_51 . CDS 230551 230629 . + 0 ID=Physo137154;Parent=Physo137154;rank=4 scaffold_51 . exon 230551 230629 . + . ID=Physo137154.4;Parent=Physo137154;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_51 . CDS 230697 230972 . + 0 ID=Physo137154;Parent=Physo137154;rank=5 scaffold_51 . exon 230697 230972 . + . ID=Physo137154.5;Parent=Physo137154;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_51 . CDS 231040 232136 . + 0 ID=Physo137154;Parent=Physo137154;rank=6 scaffold_51 . exon 231040 232136 . + . ID=Physo137154.6;Parent=Physo137154;constitutive=1;ensembl_phase=1;rank=6 scaffold_51 . CDS 232207 232336 . + 0 ID=Physo137154;Parent=Physo137154;rank=7 scaffold_51 . exon 232207 232336 . + . ID=Physo137154.7;Parent=Physo137154;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_51 . CDS 232406 232473 . + 0 ID=Physo137154;Parent=Physo137154;rank=8 scaffold_51 . exon 232406 232473 . + . ID=Physo137154.8;Parent=Physo137154;constitutive=1;ensembl_phase=1;rank=8 scaffold_51 . CDS 232537 232689 . + 0 ID=Physo137154;Parent=Physo137154;rank=9 scaffold_51 . exon 232537 232689 . + . ID=Physo137154.9;Parent=Physo137154;constitutive=1;rank=9 scaffold_51 . CDS 232759 232943 . + 0 ID=Physo137154;Parent=Physo137154;rank=10 scaffold_51 . exon 232759 232943 . + . ID=Physo137154.10;Parent=Physo137154;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_51 . CDS 233020 233165 . + 0 ID=Physo137154;Parent=Physo137154;rank=11 scaffold_51 . exon 233020 233165 . + . ID=Physo137154.11;Parent=Physo137154;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_51 . CDS 233243 233355 . + 0 ID=Physo137154;Parent=Physo137154;rank=12 scaffold_51 . exon 233243 233355 . + . ID=Physo137154.12;Parent=Physo137154;constitutive=1;ensembl_phase=1;rank=12 scaffold_51 . CDS 233430 233959 . + 0 ID=Physo137154;Parent=Physo137154;rank=13 scaffold_51 . exon 233430 233959 . + . ID=Physo137154.13;Parent=Physo137154;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_51 . CDS 234028 234074 . + 0 ID=Physo137154;Parent=Physo137154;rank=14 scaffold_51 . exon 234028 234074 . + . ID=Physo137154.14;Parent=Physo137154;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=14 scaffold_51 . CDS 234298 234443 . + 0 ID=Physo137154;Parent=Physo137154;rank=15 scaffold_51 . exon 234298 234443 . + . ID=Physo137154.15;Parent=Physo137154;constitutive=1;ensembl_phase=1;rank=15 scaffold_51 . CDS 234507 234645 . + 0 ID=Physo137154;Parent=Physo137154;rank=16 scaffold_51 . exon 234507 234645 . + . ID=Physo137154.16;Parent=Physo137154;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_51 . CDS 234708 234886 . + 0 ID=Physo137154;Parent=Physo137154;rank=17 scaffold_51 . exon 234708 234886 . + . ID=Physo137154.17;Parent=Physo137154;constitutive=1;ensembl_phase=1;rank=17 scaffold_51 . CDS 234958 235672 . + 0 ID=Physo137154;Parent=Physo137154;rank=18 scaffold_51 . exon 234958 235672 . + . ID=Physo137154.18;Parent=Physo137154;constitutive=1;ensembl_end_phase=1;rank=18 scaffold_51 . CDS 235868 235945 . + 0 ID=Physo137154;Parent=Physo137154;rank=19 scaffold_51 . exon 235868 235945 . + . ID=Physo137154.19;Parent=Physo137154;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=19 scaffold_51 . CDS 236565 237034 . + 0 ID=Physo137154;Parent=Physo137154;rank=20 scaffold_51 . exon 236565 237034 . + . ID=Physo137154.20;Parent=Physo137154;constitutive=1;ensembl_phase=1;rank=20 scaffold_51 . exon 228906 228908 . - . ID=Physo157539.1;Parent=Physo157539;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 244226 245184 . - . ID=Physo118359;biotype=protein_coding;external_name=estExt_Genewise1.C_510080;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 244226 245184 . - . ID=Physo118359;Parent=Physo118359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 244226 244450 . - 0 ID=Physo118359;Parent=Physo118359;rank=4 scaffold_51 . exon 244226 244450 . - . ID=Physo118359.4;Parent=Physo118359;constitutive=1;rank=4 scaffold_51 . CDS 244524 244792 . - 0 ID=Physo118359;Parent=Physo118359;rank=3 scaffold_51 . exon 244524 244792 . - . ID=Physo118359.3;Parent=Physo118359;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 244872 244950 . - 0 ID=Physo118359;Parent=Physo118359;rank=2 scaffold_51 . exon 244872 244950 . - . ID=Physo118359.2;Parent=Physo118359;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_51 . CDS 245014 245148 . - 0 ID=Physo118359;Parent=Physo118359;rank=1 scaffold_51 . exon 245014 245184 . - . ID=Physo118359.1;Parent=Physo118359;constitutive=1;ensembl_phase=-1;rank=1 scaffold_51 ensembl protein_coding_gene 241731 242698 . + . ID=Physo137155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510039;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 241731 242698 . + . ID=Physo137155;Parent=Physo137155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 241731 242396 . + 0 ID=Physo137155;Parent=Physo137155;rank=1 scaffold_51 . exon 241731 242396 . + . ID=Physo137155.1;Parent=Physo137155;constitutive=1;rank=1 scaffold_51 . CDS 242428 242544 . + 0 ID=Physo137155;Parent=Physo137155;rank=2 scaffold_51 . exon 242428 242544 . + . ID=Physo137155.2;Parent=Physo137155;constitutive=1;rank=2 scaffold_51 . CDS 242630 242698 . + 0 ID=Physo137155;Parent=Physo137155;rank=3 scaffold_51 . exon 242630 242698 . + . ID=Physo137155.3;Parent=Physo137155;constitutive=1;rank=3 scaffold_51 ensembl protein_coding_gene 246279 247221 . + . ID=Physo137157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510041;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 246279 247221 . + . ID=Physo137157;Parent=Physo137157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 246279 247094 . + 0 ID=Physo137157;Parent=Physo137157;rank=1 scaffold_51 . exon 246279 247094 . + . ID=Physo137157.1;Parent=Physo137157;constitutive=1;rank=1 scaffold_51 . CDS 247162 247221 . + 0 ID=Physo137157;Parent=Physo137157;rank=2 scaffold_51 . exon 247162 247221 . + . ID=Physo137157.2;Parent=Physo137157;constitutive=1;rank=2 scaffold_51 ensembl protein_coding_gene 247378 249195 . - . ID=Physo137158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510042;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 247378 249195 . - . ID=Physo137158;Parent=Physo137158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 247378 249195 . - . ID=Physo137158.1;Parent=Physo137158;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_51 . CDS 247753 249195 . - 0 ID=Physo137158;Parent=Physo137158;rank=1 scaffold_51 . repeat_region 249979 249990 . ? . description=dust scaffold_51 . repeat_region 250275 250329 . ? . description=dust scaffold_51 . repeat_region 250442 250484 . ? . description=trf scaffold_51 . repeat_region 250913 250963 . ? . description=trf scaffold_51 . repeat_region 253815 253822 . ? . description=dust scaffold_51 . repeat_region 254698 254741 . ? . description=trf scaffold_51 . biological_region 256586 256587 0.999 + . logic_name=eponine scaffold_51 . biological_region 256593 256595 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 249455 250442 . + . ID=Physo137159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510043;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 249455 250442 . + . ID=Physo137159;Parent=Physo137159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 249455 249541 . + 0 ID=Physo137159;Parent=Physo137159;rank=1 scaffold_51 . exon 249455 249541 . + . ID=Physo137159.1;Parent=Physo137159;constitutive=1;rank=1 scaffold_51 . CDS 249611 249938 . + 0 ID=Physo137159;Parent=Physo137159;rank=2 scaffold_51 . exon 249611 249938 . + . ID=Physo137159.2;Parent=Physo137159;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_51 . CDS 250017 250259 . + 0 ID=Physo137159;Parent=Physo137159;rank=3 scaffold_51 . exon 250017 250259 . + . ID=Physo137159.3;Parent=Physo137159;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 250411 250442 . + 0 ID=Physo137159;Parent=Physo137159;rank=4 scaffold_51 . exon 250411 250442 . + . ID=Physo137159.4;Parent=Physo137159;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 ensembl protein_coding_gene 257663 260377 . - . ID=Physo137160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510044;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 257663 260377 . - . ID=Physo137160;Parent=Physo137160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 257663 258225 . - 0 ID=Physo137160;Parent=Physo137160;rank=3 scaffold_51 . exon 257663 258225 . - . ID=Physo137160.3;Parent=Physo137160;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 258506 260090 . - 0 ID=Physo137160;Parent=Physo137160;rank=2 scaffold_51 . exon 258506 260090 . - . ID=Physo137160.2;Parent=Physo137160;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_51 . CDS 260145 260369 . - 0 ID=Physo137160;Parent=Physo137160;rank=1 scaffold_51 . repeat_region 266918 267100 . + . description=GypsyPi-1c_LTR scaffold_51 . repeat_region 267101 268494 . + . description=GypsyPi-1c_I-int scaffold_51 . exon 260145 260377 . - . ID=Physo137160.1;Parent=Physo137160;constitutive=1;ensembl_phase=-1;rank=1 scaffold_51 ensembl protein_coding_gene 260698 262857 . + . ID=Physo137161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510045;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 260698 262857 . + . ID=Physo137161;Parent=Physo137161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 260698 262767 . + 0 ID=Physo137161;Parent=Physo137161;rank=1 scaffold_51 . exon 260698 262857 . + . ID=Physo137161.1;Parent=Physo137161;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_51 ensembl protein_coding_gene 267188 272303 . + . ID=Physo137163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510047;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 267188 272303 . + . ID=Physo137163;Parent=Physo137163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 267188 269494 . + 0 ID=Physo137163;Parent=Physo137163;rank=1 scaffold_51 . exon 267188 269494 . + . ID=Physo137163.1;Parent=Physo137163;constitutive=1;rank=1 scaffold_51 . CDS 269554 270069 . + 0 ID=Physo137163;Parent=Physo137163;rank=2 scaffold_51 . CDS 270183 270584 . + 0 ID=Physo137163;Parent=Physo137163;rank=3 scaffold_51 . CDS 270690 271647 . + 0 ID=Physo137163;Parent=Physo137163;rank=4 scaffold_51 . CDS 271990 272303 . + 0 ID=Physo137163;Parent=Physo137163;rank=5 scaffold_51 ensembl protein_coding_gene 264130 265366 . - . ID=Physo157543;biotype=protein_coding;external_name=C_scaffold_51000009;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 264130 265366 . - . ID=Physo157543;Parent=Physo157543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 264130 264504 . - 0 ID=Physo157543;Parent=Physo157543;rank=5 scaffold_51 . exon 264130 264504 . - . ID=Physo157543.5;Parent=Physo157543;constitutive=1;rank=5 scaffold_51 . CDS 264587 264846 . - 0 ID=Physo157543;Parent=Physo157543;rank=4 scaffold_51 . exon 264587 264846 . - . ID=Physo157543.4;Parent=Physo157543;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 . CDS 264922 265000 . - 0 ID=Physo157543;Parent=Physo157543;rank=3 scaffold_51 . exon 264922 265000 . - . ID=Physo157543.3;Parent=Physo157543;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_51 . CDS 265073 265224 . - 0 ID=Physo157543;Parent=Physo157543;rank=2 scaffold_51 . exon 265073 265224 . - . ID=Physo157543.2;Parent=Physo157543;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 265309 265366 . - 0 ID=Physo157543;Parent=Physo157543;rank=1 scaffold_51 . exon 265309 265366 . - . ID=Physo157543.1;Parent=Physo157543;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . repeat_region 268940 269105 . ? . description=trf scaffold_51 . repeat_region 269084 269154 . ? . description=trf scaffold_51 . biological_region 270878 270881 0.999 + . logic_name=eponine scaffold_51 . repeat_region 271782 271831 . ? . description=dust scaffold_51 . biological_region 273222 273222 0.999 - . logic_name=eponine scaffold_51 . biological_region 273581 273586 0.999 - . logic_name=eponine scaffold_51 . biological_region 273779 273782 0.999 - . logic_name=eponine scaffold_51 . repeat_region 274025 274074 . ? . description=dust scaffold_51 . biological_region 274713 274714 0.999 + . logic_name=eponine scaffold_51 . biological_region 274762 274765 0.999 + . logic_name=eponine scaffold_51 . biological_region 276186 276186 0.999 - . logic_name=eponine scaffold_51 . biological_region 276545 276550 0.999 - . logic_name=eponine scaffold_51 . biological_region 276743 276746 0.999 - . logic_name=eponine scaffold_51 . repeat_region 278004 278016 . ? . description=dust scaffold_51 . exon 269554 270069 . + . ID=Physo137163.2;Parent=Physo137163;constitutive=1;rank=2 scaffold_51 . exon 270183 270584 . + . ID=Physo137163.3;Parent=Physo137163;constitutive=1;rank=3 scaffold_51 . exon 270690 271647 . + . ID=Physo137163.4;Parent=Physo137163;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_51 . exon 271990 272303 . + . ID=Physo137163.5;Parent=Physo137163;constitutive=1;ensembl_phase=1;rank=5 scaffold_51 ensembl protein_coding_gene 272880 273848 . - . ID=Physo137164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510048;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 272880 273848 . - . ID=Physo137164;Parent=Physo137164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 272880 273848 . - 0 ID=Physo137164;Parent=Physo137164;rank=1 scaffold_51 . exon 272880 273848 . - . ID=Physo137164.1;Parent=Physo137164;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 274605 276812 . - . ID=Physo137165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510049;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 274605 276812 . - . ID=Physo137165;Parent=Physo137165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 274605 275794 . - 0 ID=Physo137165;Parent=Physo137165;rank=2 scaffold_51 . exon 274605 275794 . - . ID=Physo137165.2;Parent=Physo137165;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 275918 276812 . - 0 ID=Physo137165;Parent=Physo137165;rank=1 scaffold_51 . exon 275918 276812 . - . ID=Physo137165.1;Parent=Physo137165;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 ensembl protein_coding_gene 282806 283396 . + . ID=Physo137166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510050;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 282806 283396 . + . ID=Physo137166;Parent=Physo137166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 282806 282890 . + 0 ID=Physo137166;Parent=Physo137166;rank=1 scaffold_51 . exon 282806 282890 . + . ID=Physo137166.1;Parent=Physo137166;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 282947 283158 . + 0 ID=Physo137166;Parent=Physo137166;rank=2 scaffold_51 . exon 282947 283158 . + . ID=Physo137166.2;Parent=Physo137166;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 283235 283396 . + 0 ID=Physo137166;Parent=Physo137166;rank=3 scaffold_51 . exon 283235 283396 . + . ID=Physo137166.3;Parent=Physo137166;constitutive=1;rank=3 scaffold_51 ensembl protein_coding_gene 285899 286489 . + . ID=Physo137167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510051;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 285899 286489 . + . ID=Physo137167;Parent=Physo137167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 285899 285983 . + 0 ID=Physo137167;Parent=Physo137167;rank=1 scaffold_51 . exon 285899 285983 . + . ID=Physo137167.1;Parent=Physo137167;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 286040 286251 . + 0 ID=Physo137167;Parent=Physo137167;rank=2 scaffold_51 . exon 286040 286251 . + . ID=Physo137167.2;Parent=Physo137167;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 286328 286489 . + 0 ID=Physo137167;Parent=Physo137167;rank=3 scaffold_51 . exon 286328 286489 . + . ID=Physo137167.3;Parent=Physo137167;constitutive=1;rank=3 scaffold_51 . repeat_region 288998 289020 . ? . description=dust scaffold_51 . repeat_region 290147 290168 . ? . description=dust scaffold_51 . repeat_region 290762 291423 . - . description=Gypsy-2-I_PI-int scaffold_51 . repeat_region 292479 292488 . ? . description=dust scaffold_51 . repeat_region 293032 293039 . ? . description=dust scaffold_51 . repeat_region 293073 293136 . ? . description=dust scaffold_51 . biological_region 295239 295239 0.999 - . logic_name=eponine scaffold_51 . repeat_region 296399 296412 . ? . description=dust scaffold_51 . repeat_region 296638 296646 . ? . description=dust scaffold_51 . repeat_region 296907 296919 . ? . description=dust scaffold_51 . repeat_region 297773 297835 . ? . description=trf scaffold_51 . repeat_region 297919 297956 . ? . description=trf scaffold_51 . repeat_region 297919 297958 . ? . description=dust scaffold_51 . repeat_region 297922 297958 . ? . description=trf scaffold_51 ensembl protein_coding_gene 302364 304188 . - . ID=Physo137168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510052;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 302364 304188 . - . ID=Physo137168;Parent=Physo137168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 302364 303602 . - 0 ID=Physo137168;Parent=Physo137168;rank=2 scaffold_51 . exon 302364 303602 . - . ID=Physo137168.2;Parent=Physo137168;constitutive=1;rank=2 scaffold_51 . CDS 303661 304188 . - 0 ID=Physo137168;Parent=Physo137168;rank=1 scaffold_51 . exon 303661 304188 . - . ID=Physo137168.1;Parent=Physo137168;constitutive=1;rank=1 scaffold_51 . repeat_region 310637 310644 . ? . description=dust scaffold_51 . repeat_region 311167 311177 . ? . description=dust scaffold_51 . biological_region 313371 313373 0.999 - . logic_name=eponine scaffold_51 . biological_region 314431 314436 0.999 + . logic_name=eponine scaffold_51 . biological_region 315135 315135 0.999 - . logic_name=eponine scaffold_51 . biological_region 315160 315160 0.999 + . logic_name=eponine scaffold_51 . biological_region 316681 316686 0.999 + . logic_name=eponine scaffold_51 . biological_region 316724 316725 0.999 + . logic_name=eponine scaffold_51 . biological_region 316772 316777 0.999 - . logic_name=eponine scaffold_51 . biological_region 316785 316790 0.999 + . logic_name=eponine scaffold_51 . biological_region 316799 316801 0.999 - . logic_name=eponine scaffold_51 . biological_region 316829 316830 0.999 + . logic_name=eponine scaffold_51 . biological_region 316853 316855 0.999 - . logic_name=eponine scaffold_51 . biological_region 317422 317427 0.999 - . logic_name=eponine scaffold_51 ensembl protein_coding_gene 310927 311632 . + . ID=Physo137169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510053;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 310927 311632 . + . ID=Physo137169;Parent=Physo137169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 310927 311145 . + 0 ID=Physo137169;Parent=Physo137169;rank=1 scaffold_51 . exon 310927 311145 . + . ID=Physo137169.1;Parent=Physo137169;constitutive=1;rank=1 scaffold_51 . CDS 311190 311339 . + 0 ID=Physo137169;Parent=Physo137169;rank=2 scaffold_51 . exon 311190 311339 . + . ID=Physo137169.2;Parent=Physo137169;constitutive=1;rank=2 scaffold_51 . CDS 311531 311632 . + 0 ID=Physo137169;Parent=Physo137169;rank=3 scaffold_51 . exon 311531 311632 . + . ID=Physo137169.3;Parent=Physo137169;constitutive=1;rank=3 scaffold_51 ensembl protein_coding_gene 314543 315028 . - . ID=Physo137170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510054;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 314543 315028 . - . ID=Physo137170;Parent=Physo137170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 314543 314744 . - 0 ID=Physo137170;Parent=Physo137170;rank=2 scaffold_51 . exon 314543 314744 . - . ID=Physo137170.2;Parent=Physo137170;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 314820 315028 . - 0 ID=Physo137170;Parent=Physo137170;rank=1 scaffold_51 . exon 314820 315028 . - . ID=Physo137170.1;Parent=Physo137170;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 ensembl protein_coding_gene 315706 316896 . - . ID=Physo137171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510055;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 315706 316896 . - . ID=Physo137171;Parent=Physo137171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 315706 316254 . - 0 ID=Physo137171;Parent=Physo137171;rank=2 scaffold_51 . exon 315706 316254 . - . ID=Physo137171.2;Parent=Physo137171;constitutive=1;rank=2 scaffold_51 . CDS 316315 316896 . - 0 ID=Physo137171;Parent=Physo137171;rank=1 scaffold_51 . exon 316315 316896 . - . ID=Physo137171.1;Parent=Physo137171;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 317107 318270 . + . ID=Physo137172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510056;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 317107 318270 . + . ID=Physo137172;Parent=Physo137172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 317107 318270 . + 0 ID=Physo137172;Parent=Physo137172;rank=1 scaffold_51 . exon 317107 318270 . + . ID=Physo137172.1;Parent=Physo137172;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 318405 320509 . - . ID=Physo137173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510057;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 318405 320509 . - . ID=Physo137173;Parent=Physo137173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 318405 320468 . - 0 ID=Physo137173;Parent=Physo137173;rank=1 scaffold_51 . exon 318405 320509 . - . ID=Physo137173.1;Parent=Physo137173;constitutive=1;ensembl_phase=-1;rank=1 scaffold_51 ensembl protein_coding_gene 320935 321638 . - . ID=Physo137174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510058;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 320935 321638 . - . ID=Physo137174;Parent=Physo137174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 320935 321638 . - . ID=Physo137174.1;Parent=Physo137174;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_51 . CDS 320936 321637 . - 0 ID=Physo137174;Parent=Physo137174;rank=1 scaffold_51 ensembl protein_coding_gene 323280 324110 . - . ID=Physo137175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510059;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 323280 324110 . - . ID=Physo137175;Parent=Physo137175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 323280 324110 . - 0 ID=Physo137175;Parent=Physo137175;rank=1 scaffold_51 . exon 323280 324110 . - . ID=Physo137175.1;Parent=Physo137175;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 326997 327958 . - . ID=Physo137176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510060;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 326997 327958 . - . ID=Physo137176;Parent=Physo137176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 326997 327238 . - 0 ID=Physo137176;Parent=Physo137176;rank=3 scaffold_51 . exon 326997 327238 . - . ID=Physo137176.3;Parent=Physo137176;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 327325 327499 . - 0 ID=Physo137176;Parent=Physo137176;rank=2 scaffold_51 . exon 327325 327499 . - . ID=Physo137176.2;Parent=Physo137176;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_51 . CDS 327578 327958 . - 0 ID=Physo137176;Parent=Physo137176;rank=1 scaffold_51 . exon 327578 327958 . - . ID=Physo137176.1;Parent=Physo137176;constitutive=1;rank=1 scaffold_51 . repeat_region 331081 331175 . ? . description=trf scaffold_51 . repeat_region 331081 331177 . ? . description=trf scaffold_51 . repeat_region 332964 332980 . ? . description=dust scaffold_51 . repeat_region 333008 333016 . ? . description=dust scaffold_51 . biological_region 335705 335709 0.999 + . logic_name=eponine scaffold_51 . biological_region 335760 335762 0.999 - . logic_name=eponine scaffold_51 . biological_region 336387 336387 0.999 - . logic_name=eponine scaffold_51 ensembl protein_coding_gene 328619 329578 . - . ID=Physo137177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510061;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 328619 329578 . - . ID=Physo137177;Parent=Physo137177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 328619 329578 . - 0 ID=Physo137177;Parent=Physo137177;rank=1 scaffold_51 . exon 328619 329578 . - . ID=Physo137177.1;Parent=Physo137177;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 331041 331973 . - . ID=Physo137178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510062;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 331041 331973 . - . ID=Physo137178;Parent=Physo137178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 331041 331973 . - 0 ID=Physo137178;Parent=Physo137178;rank=1 scaffold_51 . exon 331041 331973 . - . ID=Physo137178.1;Parent=Physo137178;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 334956 335929 . - . ID=Physo137179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510063;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 334956 335929 . - . ID=Physo137179;Parent=Physo137179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 334956 335002 . - 0 ID=Physo137179;Parent=Physo137179;rank=3 scaffold_51 . exon 334956 335002 . - . ID=Physo137179.3;Parent=Physo137179;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 335075 335201 . - 0 ID=Physo137179;Parent=Physo137179;rank=2 scaffold_51 . exon 335075 335201 . - . ID=Physo137179.2;Parent=Physo137179;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_51 . CDS 335288 335929 . - 0 ID=Physo137179;Parent=Physo137179;rank=1 scaffold_51 . exon 335288 335929 . - . ID=Physo137179.1;Parent=Physo137179;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 338788 340098 . - . ID=Physo137180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510064;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 338788 340098 . - . ID=Physo137180;Parent=Physo137180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 338788 340098 . - 0 ID=Physo137180;Parent=Physo137180;rank=1 scaffold_51 . exon 338788 340098 . - . ID=Physo137180.1;Parent=Physo137180;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 341069 342406 . - . ID=Physo137181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510065;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 341069 342406 . - . ID=Physo137181;Parent=Physo137181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 341069 342406 . - 0 ID=Physo137181;Parent=Physo137181;rank=1 scaffold_51 . exon 341069 342406 . - . ID=Physo137181.1;Parent=Physo137181;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 344209 345715 . - . ID=Physo137182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510066;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 344209 345715 . - . ID=Physo137182;Parent=Physo137182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 344209 345715 . - . ID=Physo137182.1;Parent=Physo137182;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_51 . CDS 344312 345715 . - 0 ID=Physo137182;Parent=Physo137182;rank=1 scaffold_51 ensembl protein_coding_gene 346341 347620 . + . ID=Physo137183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510067;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 346341 347620 . + . ID=Physo137183;Parent=Physo137183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 346341 346585 . + 0 ID=Physo137183;Parent=Physo137183;rank=1 scaffold_51 . exon 346341 346585 . + . ID=Physo137183.1;Parent=Physo137183;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 346646 347006 . + 0 ID=Physo137183;Parent=Physo137183;rank=2 scaffold_51 . exon 346646 347006 . + . ID=Physo137183.2;Parent=Physo137183;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 347070 347508 . + 0 ID=Physo137183;Parent=Physo137183;rank=3 scaffold_51 . exon 347070 347508 . + . ID=Physo137183.3;Parent=Physo137183;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_51 . CDS 347595 347620 . + 0 ID=Physo137183;Parent=Physo137183;rank=4 scaffold_51 . exon 347595 347620 . + . ID=Physo137183.4;Parent=Physo137183;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 ensembl protein_coding_gene 347971 349179 . - . ID=Physo137184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510068;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 347971 349179 . - . ID=Physo137184;Parent=Physo137184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 347971 349179 . - 0 ID=Physo137184;Parent=Physo137184;rank=1 scaffold_51 . exon 347971 349179 . - . ID=Physo137184.1;Parent=Physo137184;constitutive=1;rank=1 scaffold_51 . biological_region 348663 348664 0.999 + . logic_name=eponine scaffold_51 . repeat_region 349296 349303 . ? . description=dust scaffold_51 . biological_region 349945 349947 0.999 - . logic_name=eponine scaffold_51 . repeat_region 350245 350253 . ? . description=dust scaffold_51 . biological_region 350455 350459 0.999 + . logic_name=eponine scaffold_51 . biological_region 350483 350488 0.999 - . logic_name=eponine scaffold_51 . biological_region 350486 350490 0.999 + . logic_name=eponine scaffold_51 . biological_region 350540 350543 0.999 + . logic_name=eponine scaffold_51 . biological_region 350544 350549 0.999 - . logic_name=eponine scaffold_51 . biological_region 350585 350587 0.999 + . logic_name=eponine scaffold_51 . biological_region 350602 350602 0.999 + . logic_name=eponine scaffold_51 . biological_region 350609 350611 0.999 - . logic_name=eponine scaffold_51 . repeat_region 352969 353062 . ? . description=dust scaffold_51 . repeat_region 355463 355491 . ? . description=dust scaffold_51 . repeat_region 355463 355491 . ? . description=trf scaffold_51 . repeat_region 356080 356087 . ? . description=dust scaffold_51 . biological_region 356690 356692 0.999 + . logic_name=eponine scaffold_51 . repeat_region 357218 357239 . ? . description=dust scaffold_51 . repeat_region 357218 357239 . ? . description=trf scaffold_51 ensembl protein_coding_gene 349774 350922 . - . ID=Physo137185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510069;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 349774 350922 . - . ID=Physo137185;Parent=Physo137185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 349774 350922 . - 0 ID=Physo137185;Parent=Physo137185;rank=1 scaffold_51 . exon 349774 350922 . - . ID=Physo137185.1;Parent=Physo137185;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 352428 355958 . + . ID=Physo137186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510070;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 352428 355958 . + . ID=Physo137186;Parent=Physo137186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 352428 352787 . + 0 ID=Physo137186;Parent=Physo137186;rank=1 scaffold_51 . exon 352428 352787 . + . ID=Physo137186.1;Parent=Physo137186;constitutive=1;rank=1 scaffold_51 . CDS 352881 355958 . + 0 ID=Physo137186;Parent=Physo137186;rank=2 scaffold_51 . exon 352881 355958 . + . ID=Physo137186.2;Parent=Physo137186;constitutive=1;rank=2 scaffold_51 ensembl protein_coding_gene 356036 357202 . - . ID=Physo137187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510071;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 356036 357202 . - . ID=Physo137187;Parent=Physo137187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 356036 357202 . - 0 ID=Physo137187;Parent=Physo137187;rank=1 scaffold_51 . exon 356036 357202 . - . ID=Physo137187.1;Parent=Physo137187;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 357833 361653 . + . ID=Physo157545;biotype=protein_coding;external_name=C_scaffold_51000011;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 357833 361653 . + . ID=Physo157545;Parent=Physo157545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 357833 357985 . + 0 ID=Physo157545;Parent=Physo157545;rank=1 scaffold_51 . exon 357833 357985 . + . ID=Physo157545.1;Parent=Physo157545;constitutive=1;rank=1 scaffold_51 . CDS 358013 358312 . + 0 ID=Physo157545;Parent=Physo157545;rank=2 scaffold_51 . exon 358013 358312 . + . ID=Physo157545.2;Parent=Physo157545;constitutive=1;rank=2 scaffold_51 . CDS 358376 358448 . + 0 ID=Physo157545;Parent=Physo157545;rank=3 scaffold_51 . CDS 358656 358890 . + 0 ID=Physo157545;Parent=Physo157545;rank=4 scaffold_51 . CDS 359053 359150 . + 0 ID=Physo157545;Parent=Physo157545;rank=5 scaffold_51 . CDS 359188 359231 . + 0 ID=Physo157545;Parent=Physo157545;rank=6 scaffold_51 . CDS 359270 359365 . + 0 ID=Physo157545;Parent=Physo157545;rank=7 scaffold_51 . CDS 359438 359496 . + 0 ID=Physo157545;Parent=Physo157545;rank=8 scaffold_51 . CDS 359833 360126 . + 0 ID=Physo157545;Parent=Physo157545;rank=9 scaffold_51 . CDS 360563 360682 . + 0 ID=Physo157545;Parent=Physo157545;rank=10 scaffold_51 . CDS 360716 360965 . + 0 ID=Physo157545;Parent=Physo157545;rank=11 scaffold_51 . CDS 361041 361145 . + 0 ID=Physo157545;Parent=Physo157545;rank=12 scaffold_51 . CDS 361216 361465 . + 0 ID=Physo157545;Parent=Physo157545;rank=13 scaffold_51 . CDS 361505 361653 . + 0 ID=Physo157545;Parent=Physo157545;rank=14 scaffold_51 . repeat_region 365691 365875 . + . description=(CTG)n scaffold_51 ensembl protein_coding_gene 362715 363629 . + . ID=Physo137189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510073;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 362715 363629 . + . ID=Physo137189;Parent=Physo137189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 362715 363629 . + 0 ID=Physo137189;Parent=Physo137189;rank=1 scaffold_51 . exon 362715 363629 . + . ID=Physo137189.1;Parent=Physo137189;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 364061 366631 . - . ID=Physo137190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510074;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 364061 366631 . - . ID=Physo137190;Parent=Physo137190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . exon 364061 365209 . - . ID=Physo137190.7;Parent=Physo137190;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_51 . CDS 364257 365209 . - 0 ID=Physo137190;Parent=Physo137190;rank=7 scaffold_51 . CDS 365288 365372 . - 0 ID=Physo137190;Parent=Physo137190;rank=6 scaffold_51 . exon 365288 365372 . - . ID=Physo137190.6;Parent=Physo137190;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_51 . CDS 365447 365541 . - 0 ID=Physo137190;Parent=Physo137190;rank=5 scaffold_51 . exon 365447 365541 . - . ID=Physo137190.5;Parent=Physo137190;constitutive=1;ensembl_phase=1;rank=5 scaffold_51 . CDS 365611 366024 . - 0 ID=Physo137190;Parent=Physo137190;rank=4 scaffold_51 . exon 365611 366024 . - . ID=Physo137190.4;Parent=Physo137190;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_51 . CDS 366094 366308 . - 0 ID=Physo137190;Parent=Physo137190;rank=3 scaffold_51 . exon 366094 366308 . - . ID=Physo137190.3;Parent=Physo137190;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 366387 366512 . - 0 ID=Physo137190;Parent=Physo137190;rank=2 scaffold_51 . exon 366387 366512 . - . ID=Physo137190.2;Parent=Physo137190;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_51 . CDS 366585 366631 . - 0 ID=Physo137190;Parent=Physo137190;rank=1 scaffold_51 . exon 366585 366631 . - . ID=Physo137190.1;Parent=Physo137190;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . exon 358376 358448 . + . ID=Physo157545.3;Parent=Physo157545;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_51 . exon 358656 358890 . + . ID=Physo157545.4;Parent=Physo157545;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_51 . exon 359053 359150 . + . ID=Physo157545.5;Parent=Physo157545;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_51 . exon 359188 359231 . + . ID=Physo157545.6;Parent=Physo157545;constitutive=1;ensembl_phase=1;rank=6 scaffold_51 . exon 359270 359365 . + . ID=Physo157545.7;Parent=Physo157545;constitutive=1;rank=7 scaffold_51 . exon 359438 359496 . + . ID=Physo157545.8;Parent=Physo157545;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_51 . exon 359833 360126 . + . ID=Physo157545.9;Parent=Physo157545;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_51 . exon 360563 360682 . + . ID=Physo157545.10;Parent=Physo157545;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_51 . exon 360716 360965 . + . ID=Physo157545.11;Parent=Physo157545;constitutive=1;ensembl_phase=2;rank=11 scaffold_51 . exon 361041 361145 . + . ID=Physo157545.12;Parent=Physo157545;constitutive=1;rank=12 scaffold_51 . exon 361216 361465 . + . ID=Physo157545.13;Parent=Physo157545;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_51 . exon 361505 361653 . + . ID=Physo157545.14;Parent=Physo157545;constitutive=1;ensembl_phase=1;rank=14 scaffold_51 . repeat_region 374055 374109 . ? . description=trf scaffold_51 . repeat_region 374055 374131 . ? . description=trf scaffold_51 . repeat_region 374109 374148 . ? . description=trf scaffold_51 . biological_region 374128 374131 0.999 - . logic_name=eponine scaffold_51 . biological_region 374155 374158 0.999 - . logic_name=eponine scaffold_51 . repeat_region 376120 376134 . ? . description=dust scaffold_51 . repeat_region 376816 376824 . ? . description=dust scaffold_51 . repeat_region 390857 390867 . ? . description=dust scaffold_51 . repeat_region 393703 393771 . ? . description=trf scaffold_51 . biological_region 394575 394578 0.999 - . logic_name=eponine scaffold_51 . repeat_region 394876 394889 . ? . description=dust scaffold_51 . biological_region 394909 394911 0.999 - . logic_name=eponine scaffold_51 . repeat_region 395676 395683 . ? . description=dust scaffold_51 . repeat_region 397702 397716 . ? . description=dust scaffold_51 ensembl protein_coding_gene 399867 401030 . + . ID=Physo137191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510075;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 399867 401030 . + . ID=Physo137191;Parent=Physo137191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 399867 400186 . + 0 ID=Physo137191;Parent=Physo137191;rank=1 scaffold_51 . exon 399867 400186 . + . ID=Physo137191.1;Parent=Physo137191;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 400230 400824 . + 0 ID=Physo137191;Parent=Physo137191;rank=2 scaffold_51 . exon 400230 400824 . + . ID=Physo137191.2;Parent=Physo137191;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 400878 401030 . + 0 ID=Physo137191;Parent=Physo137191;rank=3 scaffold_51 . exon 400878 401030 . + . ID=Physo137191.3;Parent=Physo137191;constitutive=1;rank=3 scaffold_51 ensembl protein_coding_gene 402852 404520 . + . ID=Physo137192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510076;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 402852 404520 . + . ID=Physo137192;Parent=Physo137192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 402852 402903 . + 0 ID=Physo137192;Parent=Physo137192;rank=1 scaffold_51 . exon 402852 402903 . + . ID=Physo137192.1;Parent=Physo137192;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 402959 403286 . + 0 ID=Physo137192;Parent=Physo137192;rank=2 scaffold_51 . exon 402959 403286 . + . ID=Physo137192.2;Parent=Physo137192;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_51 . CDS 403345 403705 . + 0 ID=Physo137192;Parent=Physo137192;rank=3 scaffold_51 . exon 403345 403705 . + . ID=Physo137192.3;Parent=Physo137192;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . CDS 403744 403973 . + 0 ID=Physo137192;Parent=Physo137192;rank=4 scaffold_51 . exon 403744 403973 . + . ID=Physo137192.4;Parent=Physo137192;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_51 . CDS 404448 404520 . + 0 ID=Physo137192;Parent=Physo137192;rank=5 scaffold_51 . exon 404448 404520 . + . ID=Physo137192.5;Parent=Physo137192;constitutive=1;ensembl_phase=2;rank=5 scaffold_51 . biological_region 415961 415962 0.999 + . logic_name=eponine scaffold_51 . biological_region 416841 416843 0.999 - . logic_name=eponine scaffold_51 . biological_region 416897 416899 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 412475 414954 . + . ID=Physo137193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510077;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 412475 414954 . + . ID=Physo137193;Parent=Physo137193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 412475 412975 . + 0 ID=Physo137193;Parent=Physo137193;rank=1 scaffold_51 . exon 412475 412975 . + . ID=Physo137193.1;Parent=Physo137193;constitutive=1;rank=1 scaffold_51 . CDS 413483 413761 . + 0 ID=Physo137193;Parent=Physo137193;rank=2 scaffold_51 . exon 413483 413761 . + . ID=Physo137193.2;Parent=Physo137193;constitutive=1;rank=2 scaffold_51 . CDS 413798 414351 . + 0 ID=Physo137193;Parent=Physo137193;rank=3 scaffold_51 . exon 413798 414351 . + . ID=Physo137193.3;Parent=Physo137193;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_51 . CDS 414423 414954 . + 0 ID=Physo137193;Parent=Physo137193;rank=4 scaffold_51 . exon 414423 414954 . + . ID=Physo137193.4;Parent=Physo137193;constitutive=1;ensembl_phase=2;rank=4 scaffold_51 ensembl protein_coding_gene 415580 416446 . + . ID=Physo137194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510078;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 415580 416446 . + . ID=Physo137194;Parent=Physo137194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 415580 416446 . + 0 ID=Physo137194;Parent=Physo137194;rank=1 scaffold_51 . exon 415580 416446 . + . ID=Physo137194.1;Parent=Physo137194;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 416591 419729 . - . ID=Physo137195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510079;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 416591 419729 . - . ID=Physo137195;Parent=Physo137195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 416591 419569 . - 0 ID=Physo137195;Parent=Physo137195;rank=2 scaffold_51 . exon 416591 419569 . - . ID=Physo137195.2;Parent=Physo137195;constitutive=1;rank=2 scaffold_51 . CDS 419688 419729 . - 0 ID=Physo137195;Parent=Physo137195;rank=1 scaffold_51 . repeat_region 424849 424858 . ? . description=dust scaffold_51 . exon 419688 419729 . - . ID=Physo137195.1;Parent=Physo137195;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 421489 423004 . + . ID=Physo137196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510080;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 421489 423004 . + . ID=Physo137196;Parent=Physo137196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 421489 421588 . + 0 ID=Physo137196;Parent=Physo137196;rank=1 scaffold_51 . exon 421489 421588 . + . ID=Physo137196.1;Parent=Physo137196;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 421618 421932 . + 0 ID=Physo137196;Parent=Physo137196;rank=2 scaffold_51 . exon 421618 421932 . + . ID=Physo137196.2;Parent=Physo137196;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 422090 422766 . + 0 ID=Physo137196;Parent=Physo137196;rank=3 scaffold_51 . exon 422090 422766 . + . ID=Physo137196.3;Parent=Physo137196;constitutive=1;ensembl_phase=1;rank=3 scaffold_51 . CDS 422840 423004 . + 0 ID=Physo137196;Parent=Physo137196;rank=4 scaffold_51 . exon 422840 423004 . + . ID=Physo137196.4;Parent=Physo137196;constitutive=1;rank=4 scaffold_51 ensembl protein_coding_gene 423703 424710 . + . ID=Physo137197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510081;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 423703 424710 . + . ID=Physo137197;Parent=Physo137197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 423703 424710 . + 0 ID=Physo137197;Parent=Physo137197;rank=1 scaffold_51 . exon 423703 424710 . + . ID=Physo137197.1;Parent=Physo137197;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 426093 429085 . + . ID=Physo137198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510082;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 426093 429085 . + . ID=Physo137198;Parent=Physo137198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 426093 426213 . + 0 ID=Physo137198;Parent=Physo137198;rank=1 scaffold_51 . exon 426093 426213 . + . ID=Physo137198.1;Parent=Physo137198;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_51 . CDS 426288 428794 . + 0 ID=Physo137198;Parent=Physo137198;rank=2 scaffold_51 . exon 426288 428794 . + . ID=Physo137198.2;Parent=Physo137198;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 428918 429085 . + 0 ID=Physo137198;Parent=Physo137198;rank=3 scaffold_51 . biological_region 430870 430873 0.999 - . logic_name=eponine scaffold_51 . repeat_region 433050 433073 . ? . description=trf scaffold_51 . biological_region 434431 434432 0.999 + . logic_name=eponine scaffold_51 ensembl protein_coding_gene 434951 436306 . + . ID=Physo109007;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_510007;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 434951 436306 . + . ID=Physo109007;Parent=Physo109007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 434951 436306 . + 0 ID=Physo109007;Parent=Physo109007;rank=1 scaffold_51 . exon 434951 436306 . + . ID=Physo109007.1;Parent=Physo109007;constitutive=1;rank=1 scaffold_51 . exon 428918 429085 . + . ID=Physo137198.3;Parent=Physo137198;constitutive=1;rank=3 scaffold_51 ensembl protein_coding_gene 430665 433125 . + . ID=Physo137199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510083;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 430665 433125 . + . ID=Physo137199;Parent=Physo137199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 430665 431588 . + 0 ID=Physo137199;Parent=Physo137199;rank=1 scaffold_51 . exon 430665 431588 . + . ID=Physo137199.1;Parent=Physo137199;constitutive=1;rank=1 scaffold_51 . CDS 431763 432470 . + 0 ID=Physo137199;Parent=Physo137199;rank=2 scaffold_51 . exon 431763 432470 . + . ID=Physo137199.2;Parent=Physo137199;constitutive=1;rank=2 scaffold_51 . CDS 432565 433125 . + 0 ID=Physo137199;Parent=Physo137199;rank=3 scaffold_51 . exon 432565 433125 . + . ID=Physo137199.3;Parent=Physo137199;constitutive=1;rank=3 scaffold_51 ensembl protein_coding_gene 434361 434785 . + . ID=Physo137200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510084;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 434361 434785 . + . ID=Physo137200;Parent=Physo137200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 434361 434783 . + 0 ID=Physo137200;Parent=Physo137200;rank=1 scaffold_51 . exon 434361 434785 . + . ID=Physo137200.1;Parent=Physo137200;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_51 ensembl protein_coding_gene 436479 438804 . + . ID=Physo137202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510086;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 436479 438804 . + . ID=Physo137202;Parent=Physo137202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 436479 436894 . + 0 ID=Physo137202;Parent=Physo137202;rank=1 scaffold_51 . exon 436479 436894 . + . ID=Physo137202.1;Parent=Physo137202;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 436962 437028 . + 0 ID=Physo137202;Parent=Physo137202;rank=2 scaffold_51 . exon 436962 437028 . + . ID=Physo137202.2;Parent=Physo137202;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 437106 437235 . + 0 ID=Physo137202;Parent=Physo137202;rank=3 scaffold_51 . exon 437106 437235 . + . ID=Physo137202.3;Parent=Physo137202;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_51 . CDS 437597 438804 . + 0 ID=Physo137202;Parent=Physo137202;rank=4 scaffold_51 . repeat_region 444300 444307 . ? . description=dust scaffold_51 . exon 437597 438804 . + . ID=Physo137202.4;Parent=Physo137202;constitutive=1;ensembl_phase=1;rank=4 scaffold_51 ensembl protein_coding_gene 439091 440858 . - . ID=Physo137203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510087;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 439091 440858 . - . ID=Physo137203;Parent=Physo137203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 439091 439117 . - 0 ID=Physo137203;Parent=Physo137203;rank=8 scaffold_51 . exon 439091 439117 . - . ID=Physo137203.8;Parent=Physo137203;constitutive=1;rank=8 scaffold_51 . CDS 439161 439702 . - 0 ID=Physo137203;Parent=Physo137203;rank=7 scaffold_51 . exon 439161 439702 . - . ID=Physo137203.7;Parent=Physo137203;constitutive=1;ensembl_phase=1;rank=7 scaffold_51 . CDS 439778 439844 . - 0 ID=Physo137203;Parent=Physo137203;rank=6 scaffold_51 . exon 439778 439844 . - . ID=Physo137203.6;Parent=Physo137203;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_51 . CDS 439912 439977 . - 0 ID=Physo137203;Parent=Physo137203;rank=5 scaffold_51 . exon 439912 439977 . - . ID=Physo137203.5;Parent=Physo137203;constitutive=1;rank=5 scaffold_51 . CDS 440053 440103 . - 0 ID=Physo137203;Parent=Physo137203;rank=4 scaffold_51 . exon 440053 440103 . - . ID=Physo137203.4;Parent=Physo137203;constitutive=1;rank=4 scaffold_51 . CDS 440179 440355 . - 0 ID=Physo137203;Parent=Physo137203;rank=3 scaffold_51 . exon 440179 440355 . - . ID=Physo137203.3;Parent=Physo137203;constitutive=1;rank=3 scaffold_51 . CDS 440429 440523 . - 0 ID=Physo137203;Parent=Physo137203;rank=2 scaffold_51 . exon 440429 440523 . - . ID=Physo137203.2;Parent=Physo137203;constitutive=1;ensembl_phase=1;rank=2 scaffold_51 . CDS 440599 440851 . - 0 ID=Physo137203;Parent=Physo137203;rank=1 scaffold_51 . exon 440599 440858 . - . ID=Physo137203.1;Parent=Physo137203;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_51 ensembl protein_coding_gene 441163 442182 . - . ID=Physo137204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510088;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 441163 442182 . - . ID=Physo137204;Parent=Physo137204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 441163 442182 . - 0 ID=Physo137204;Parent=Physo137204;rank=1 scaffold_51 . exon 441163 442182 . - . ID=Physo137204.1;Parent=Physo137204;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 442593 443608 . - . ID=Physo137205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510089;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 442593 443608 . - . ID=Physo137205;Parent=Physo137205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 442593 442835 . - 0 ID=Physo137205;Parent=Physo137205;rank=4 scaffold_51 . exon 442593 442835 . - . ID=Physo137205.4;Parent=Physo137205;constitutive=1;rank=4 scaffold_51 . CDS 442903 443178 . - 0 ID=Physo137205;Parent=Physo137205;rank=3 scaffold_51 . exon 442903 443178 . - . ID=Physo137205.3;Parent=Physo137205;constitutive=1;rank=3 scaffold_51 . CDS 443254 443457 . - 0 ID=Physo137205;Parent=Physo137205;rank=2 scaffold_51 . exon 443254 443457 . - . ID=Physo137205.2;Parent=Physo137205;constitutive=1;rank=2 scaffold_51 . CDS 443534 443608 . - 0 ID=Physo137205;Parent=Physo137205;rank=1 scaffold_51 . exon 443534 443608 . - . ID=Physo137205.1;Parent=Physo137205;constitutive=1;rank=1 scaffold_51 ensembl protein_coding_gene 443857 447713 . + . ID=Physo137206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510090;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 443857 447713 . + . ID=Physo137206;Parent=Physo137206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 443857 443859 . + 0 ID=Physo137206;Parent=Physo137206;rank=1 scaffold_51 . exon 443857 443859 . + . ID=Physo137206.1;Parent=Physo137206;constitutive=1;rank=1 scaffold_51 . CDS 443958 444139 . + 0 ID=Physo137206;Parent=Physo137206;rank=2 scaffold_51 . exon 443958 444139 . + . ID=Physo137206.2;Parent=Physo137206;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_51 . CDS 444383 447713 . + 0 ID=Physo137206;Parent=Physo137206;rank=3 scaffold_51 . exon 444383 447713 . + . ID=Physo137206.3;Parent=Physo137206;constitutive=1;ensembl_phase=2;rank=3 scaffold_51 . repeat_region 449914 449941 . ? . description=trf scaffold_51 . repeat_region 452115 452150 . ? . description=trf scaffold_51 . repeat_region 452803 452828 . ? . description=trf scaffold_51 ensembl protein_coding_gene 448227 449404 . - . ID=Physo137207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510091;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 448227 449404 . - . ID=Physo137207;Parent=Physo137207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 448227 448466 . - 0 ID=Physo137207;Parent=Physo137207;rank=4 scaffold_51 . exon 448227 448466 . - . ID=Physo137207.4;Parent=Physo137207;constitutive=1;rank=4 scaffold_51 . CDS 448535 448804 . - 0 ID=Physo137207;Parent=Physo137207;rank=3 scaffold_51 . exon 448535 448804 . - . ID=Physo137207.3;Parent=Physo137207;constitutive=1;rank=3 scaffold_51 . CDS 448890 449093 . - 0 ID=Physo137207;Parent=Physo137207;rank=2 scaffold_51 . exon 448890 449093 . - . ID=Physo137207.2;Parent=Physo137207;constitutive=1;rank=2 scaffold_51 . CDS 449167 449253 . - 0 ID=Physo137207;Parent=Physo137207;rank=1 scaffold_51 . exon 449167 449404 . - . ID=Physo137207.1;Parent=Physo137207;constitutive=1;ensembl_phase=-1;rank=1 scaffold_51 . repeat_region 458561 458754 . + . description=Sola3-2_PS scaffold_51 . repeat_region 461691 461698 . ? . description=dust scaffold_51 . repeat_region 464351 469323 . + . description=GypsyPi-1c_I-int scaffold_51 . biological_region 466327 466328 0.999 - . logic_name=eponine scaffold_51 . biological_region 466717 466718 0.999 - . logic_name=eponine scaffold_51 ensembl protein_coding_gene 457662 458116 . + . ID=Physo137208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510092;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 457662 458116 . + . ID=Physo137208;Parent=Physo137208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 457662 457718 . + 0 ID=Physo137208;Parent=Physo137208;rank=1 scaffold_51 . exon 457662 457718 . + . ID=Physo137208.1;Parent=Physo137208;constitutive=1;rank=1 scaffold_51 . CDS 457862 458116 . + 0 ID=Physo137208;Parent=Physo137208;rank=2 scaffold_51 . exon 457862 458116 . + . ID=Physo137208.2;Parent=Physo137208;constitutive=1;rank=2 scaffold_51 ensembl protein_coding_gene 464135 468292 . + . ID=Physo137209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510093;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 464135 468292 . + . ID=Physo137209;Parent=Physo137209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 464135 464265 . + 0 ID=Physo137209;Parent=Physo137209;rank=1 scaffold_51 . exon 464135 464265 . + . ID=Physo137209.1;Parent=Physo137209;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_51 . CDS 464295 464493 . + 0 ID=Physo137209;Parent=Physo137209;rank=2 scaffold_51 . exon 464295 464493 . + . ID=Physo137209.2;Parent=Physo137209;constitutive=1;ensembl_phase=2;rank=2 scaffold_51 . CDS 464628 465105 . + 0 ID=Physo137209;Parent=Physo137209;rank=3 scaffold_51 . exon 464628 465105 . + . ID=Physo137209.3;Parent=Physo137209;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_51 . CDS 465267 466790 . + 0 ID=Physo137209;Parent=Physo137209;rank=4 scaffold_51 . exon 465267 466790 . + . ID=Physo137209.4;Parent=Physo137209;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_51 . CDS 467116 467135 . + 0 ID=Physo137209;Parent=Physo137209;rank=5 scaffold_51 . exon 467116 467135 . + . ID=Physo137209.5;Parent=Physo137209;constitutive=1;ensembl_phase=1;rank=5 scaffold_51 . CDS 467204 467409 . + 0 ID=Physo137209;Parent=Physo137209;rank=6 scaffold_51 . exon 467204 467409 . + . ID=Physo137209.6;Parent=Physo137209;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_51 . CDS 467446 468292 . + 0 ID=Physo137209;Parent=Physo137209;rank=7 scaffold_51 ensembl tRNA_gene 477085 477156 . - . ID=EPrPSOG00000000042;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_51 ensembl transcript 477085 477156 . - . ID=EPrPSOT00000000042;Parent=EPrPSOG00000000042;biotype=tRNA;logic_name=ncrna_eg scaffold_51 . exon 477085 477156 . - . ID=EPrPSOE00000000042;Parent=EPrPSOT00000000042;constitutive=1;rank=1 scaffold_51 . exon 467446 468292 . + . ID=Physo137209.7;Parent=Physo137209;constitutive=1;ensembl_phase=2;rank=7 scaffold_51 ensembl protein_coding_gene 469300 471120 . - . ID=Physo137210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_510094;logic_name=jgi_physo1_1 scaffold_51 ensembl transcript 469300 471120 . - . ID=Physo137210;Parent=Physo137210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_51 . CDS 469300 471120 . - 0 ID=Physo137210;Parent=Physo137210;rank=1 scaffold_51 . exon 469300 471120 . - . ID=Physo137210.1;Parent=Physo137210;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_48 1 485726 scaffold_48 . repeat_region 24 540 . + . description=GypsyPi-1c_I-int scaffold_48 . biological_region 699 703 0.999 - . logic_name=eponine scaffold_48 . repeat_region 813 1013 . + . description=GypsyPi-1c_I-int scaffold_48 . repeat_region 959 984 . ? . description=trf scaffold_48 . biological_region 1034 1035 0.999 + . logic_name=eponine scaffold_48 . repeat_region 1129 6204 . ? . description=dust scaffold_48 . repeat_region 6223 6300 . ? . description=dust scaffold_48 . repeat_region 6227 6276 . ? . description=trf scaffold_48 . repeat_region 6227 6295 . ? . description=trf scaffold_48 . repeat_region 6247 6304 . ? . description=trf scaffold_48 . biological_region 8111 8113 0.999 - . logic_name=eponine scaffold_48 . biological_region 8122 8128 0.999 + . logic_name=eponine scaffold_48 . repeat_region 8262 8304 . ? . description=trf scaffold_48 . repeat_region 8539 8546 . ? . description=dust scaffold_48 . repeat_region 8571 8580 . ? . description=dust scaffold_48 . repeat_region 8836 8844 . ? . description=dust scaffold_48 ensembl protein_coding_gene 203 778 . + . ID=Physo136722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480001;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 203 778 . + . ID=Physo136722;Parent=Physo136722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 203 334 . + 0 ID=Physo136722;Parent=Physo136722;rank=1 scaffold_48 . exon 203 334 . + . ID=Physo136722.1;Parent=Physo136722;constitutive=1;rank=1 scaffold_48 . CDS 455 518 . + 0 ID=Physo136722;Parent=Physo136722;rank=2 scaffold_48 . exon 455 518 . + . ID=Physo136722.2;Parent=Physo136722;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 543 778 . + 0 ID=Physo136722;Parent=Physo136722;rank=3 scaffold_48 . exon 543 778 . + . ID=Physo136722.3;Parent=Physo136722;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 ensembl protein_coding_gene 7287 8057 . + . ID=Physo136723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480002;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 7287 8057 . + . ID=Physo136723;Parent=Physo136723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 7287 7509 . + 0 ID=Physo136723;Parent=Physo136723;rank=1 scaffold_48 . exon 7287 7509 . + . ID=Physo136723.1;Parent=Physo136723;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 7543 8057 . + 0 ID=Physo136723;Parent=Physo136723;rank=2 scaffold_48 . exon 7543 8057 . + . ID=Physo136723.2;Parent=Physo136723;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . repeat_region 20323 20350 . ? . description=trf scaffold_48 . biological_region 23034 23038 0.999 - . logic_name=eponine scaffold_48 . repeat_region 27046 27053 . ? . description=dust scaffold_48 . repeat_region 27198 27242 . ? . description=trf scaffold_48 . biological_region 27511 27515 0.999 + . logic_name=eponine scaffold_48 . repeat_region 27537 27566 . ? . description=trf scaffold_48 . repeat_region 27985 28069 . ? . description=dust scaffold_48 . repeat_region 28024 28057 . ? . description=trf scaffold_48 . biological_region 28169 28174 0.999 - . logic_name=eponine scaffold_48 . biological_region 28282 28282 0.999 - . logic_name=eponine scaffold_48 . biological_region 29175 29178 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 21196 21979 . - . ID=Physo136724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480003;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 21196 21979 . - . ID=Physo136724;Parent=Physo136724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 21196 21979 . - . ID=Physo136724.1;Parent=Physo136724;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 . CDS 21341 21979 . - 0 ID=Physo136724;Parent=Physo136724;rank=1 scaffold_48 ensembl protein_coding_gene 22723 26953 . - . ID=Physo136725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480004;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 22723 26953 . - . ID=Physo136725;Parent=Physo136725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 22723 24458 . - . ID=Physo136725.3;Parent=Physo136725;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_48 . CDS 22788 24458 . - 0 ID=Physo136725;Parent=Physo136725;rank=3 scaffold_48 . CDS 24530 26261 . - 0 ID=Physo136725;Parent=Physo136725;rank=2 scaffold_48 . exon 24530 26261 . - . ID=Physo136725.2;Parent=Physo136725;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 26577 26953 . - 0 ID=Physo136725;Parent=Physo136725;rank=1 scaffold_48 . exon 26577 26953 . - . ID=Physo136725.1;Parent=Physo136725;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 27328 30426 . + . ID=Physo136726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480005;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 27328 30426 . + . ID=Physo136726;Parent=Physo136726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 27328 27837 . + 0 ID=Physo136726;Parent=Physo136726;rank=1 scaffold_48 . exon 27328 27837 . + . ID=Physo136726.1;Parent=Physo136726;constitutive=1;rank=1 scaffold_48 . CDS 27917 28513 . + 0 ID=Physo136726;Parent=Physo136726;rank=2 scaffold_48 . exon 27917 28513 . + . ID=Physo136726.2;Parent=Physo136726;constitutive=1;rank=2 scaffold_48 . CDS 28601 28676 . + 0 ID=Physo136726;Parent=Physo136726;rank=3 scaffold_48 . exon 28601 28676 . + . ID=Physo136726.3;Parent=Physo136726;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 28902 28969 . + 0 ID=Physo136726;Parent=Physo136726;rank=4 scaffold_48 . exon 28902 28969 . + . ID=Physo136726.4;Parent=Physo136726;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 29044 29064 . + 0 ID=Physo136726;Parent=Physo136726;rank=5 scaffold_48 . exon 29044 29064 . + . ID=Physo136726.5;Parent=Physo136726;constitutive=1;rank=5 scaffold_48 . CDS 29122 30426 . + 0 ID=Physo136726;Parent=Physo136726;rank=6 scaffold_48 . exon 29122 30426 . + . ID=Physo136726.6;Parent=Physo136726;constitutive=1;rank=6 scaffold_48 ensembl protein_coding_gene 30607 32779 . + . ID=Physo136727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480006;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 30607 32779 . + . ID=Physo136727;Parent=Physo136727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 30607 31967 . + 0 ID=Physo136727;Parent=Physo136727;rank=1 scaffold_48 . exon 30607 31967 . + . ID=Physo136727.1;Parent=Physo136727;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 32032 32169 . + 0 ID=Physo136727;Parent=Physo136727;rank=2 scaffold_48 . exon 32032 32169 . + . ID=Physo136727.2;Parent=Physo136727;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_48 . CDS 32257 32779 . + 0 ID=Physo136727;Parent=Physo136727;rank=3 scaffold_48 . exon 32257 32779 . + . ID=Physo136727.3;Parent=Physo136727;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 ensembl protein_coding_gene 33082 34077 . + . ID=Physo136728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480007;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 33082 34077 . + . ID=Physo136728;Parent=Physo136728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 33082 33658 . + 0 ID=Physo136728;Parent=Physo136728;rank=1 scaffold_48 . exon 33082 33658 . + . ID=Physo136728.1;Parent=Physo136728;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 33736 33977 . + 0 ID=Physo136728;Parent=Physo136728;rank=2 scaffold_48 . exon 33736 34077 . + . ID=Physo136728.2;Parent=Physo136728;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_48 ensembl protein_coding_gene 34163 37054 . - . ID=Physo136729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480008;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 34163 37054 . - . ID=Physo136729;Parent=Physo136729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 34163 35714 . - 0 ID=Physo136729;Parent=Physo136729;rank=5 scaffold_48 . exon 34163 35714 . - . ID=Physo136729.5;Parent=Physo136729;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 35781 35851 . - 0 ID=Physo136729;Parent=Physo136729;rank=4 scaffold_48 . exon 35781 35851 . - . ID=Physo136729.4;Parent=Physo136729;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 35931 35974 . - 0 ID=Physo136729;Parent=Physo136729;rank=3 scaffold_48 . exon 35931 35974 . - . ID=Physo136729.3;Parent=Physo136729;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 36197 36792 . - 0 ID=Physo136729;Parent=Physo136729;rank=2 scaffold_48 . exon 36197 36792 . - . ID=Physo136729.2;Parent=Physo136729;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 36881 36981 . - 0 ID=Physo136729;Parent=Physo136729;rank=1 scaffold_48 . exon 36881 37054 . - . ID=Physo136729.1;Parent=Physo136729;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 37382 39298 . - . ID=Physo136730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480009;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 37382 39298 . - . ID=Physo136730;Parent=Physo136730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 37382 39223 . - 0 ID=Physo136730;Parent=Physo136730;rank=1 scaffold_48 . exon 37382 39298 . - . ID=Physo136730.1;Parent=Physo136730;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 . biological_region 40100 40101 0.999 - . logic_name=eponine scaffold_48 . biological_region 40141 40145 0.999 - . logic_name=eponine scaffold_48 . biological_region 40177 40178 0.999 - . logic_name=eponine scaffold_48 . biological_region 40204 40208 0.999 - . logic_name=eponine scaffold_48 . biological_region 40232 40233 0.999 - . logic_name=eponine scaffold_48 . repeat_region 40464 40506 . ? . description=dust scaffold_48 . biological_region 41835 41836 0.999 - . logic_name=eponine scaffold_48 . biological_region 43546 43549 0.999 - . logic_name=eponine scaffold_48 . repeat_region 45167 45396 . + . description=Polinton-1_PI scaffold_48 . repeat_region 46650 46799 . + . description=Polinton-1_PI scaffold_48 ensembl protein_coding_gene 40438 41216 . + . ID=Physo136731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480010;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 40438 41216 . + . ID=Physo136731;Parent=Physo136731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 40438 40840 . + . ID=Physo136731.1;Parent=Physo136731;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_48 . CDS 40488 40840 . + 0 ID=Physo136731;Parent=Physo136731;rank=1 scaffold_48 . CDS 40926 41100 . + 0 ID=Physo136731;Parent=Physo136731;rank=2 scaffold_48 . exon 40926 41216 . + . ID=Physo136731.2;Parent=Physo136731;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_48 ensembl protein_coding_gene 41696 45069 . + . ID=Physo136732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480011;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 41696 45069 . + . ID=Physo136732;Parent=Physo136732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 41696 41803 . + 0 ID=Physo136732;Parent=Physo136732;rank=1 scaffold_48 . exon 41696 41803 . + . ID=Physo136732.1;Parent=Physo136732;constitutive=1;rank=1 scaffold_48 . CDS 41881 41966 . + 0 ID=Physo136732;Parent=Physo136732;rank=2 scaffold_48 . exon 41881 41966 . + . ID=Physo136732.2;Parent=Physo136732;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 42040 42148 . + 0 ID=Physo136732;Parent=Physo136732;rank=3 scaffold_48 . exon 42040 42148 . + . ID=Physo136732.3;Parent=Physo136732;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 42230 42411 . + 0 ID=Physo136732;Parent=Physo136732;rank=4 scaffold_48 . exon 42230 42411 . + . ID=Physo136732.4;Parent=Physo136732;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 42498 45069 . + 0 ID=Physo136732;Parent=Physo136732;rank=5 scaffold_48 . exon 42498 45069 . + . ID=Physo136732.5;Parent=Physo136732;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 ensembl protein_coding_gene 47502 48842 . - . ID=Physo136733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480012;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 47502 48842 . - . ID=Physo136733;Parent=Physo136733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 47502 48842 . - 0 ID=Physo136733;Parent=Physo136733;rank=1 scaffold_48 . exon 47502 48842 . - . ID=Physo136733.1;Parent=Physo136733;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 49391 51289 . - . ID=Physo136734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480013;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 49391 51289 . - . ID=Physo136734;Parent=Physo136734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 49391 50726 . - 0 ID=Physo136734;Parent=Physo136734;rank=2 scaffold_48 . exon 49391 50726 . - . ID=Physo136734.2;Parent=Physo136734;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 50934 51289 . - 0 ID=Physo136734;Parent=Physo136734;rank=1 scaffold_48 . exon 50934 51289 . - . ID=Physo136734.1;Parent=Physo136734;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 54092 55758 . - . ID=Physo136735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480014;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 54092 55758 . - . ID=Physo136735;Parent=Physo136735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 54092 54100 . - 0 ID=Physo136735;Parent=Physo136735;rank=4 scaffold_48 . exon 54092 54100 . - . ID=Physo136735.4;Parent=Physo136735;constitutive=1;rank=4 scaffold_48 . CDS 54127 54227 . - 0 ID=Physo136735;Parent=Physo136735;rank=3 scaffold_48 . exon 54127 54227 . - . ID=Physo136735.3;Parent=Physo136735;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 54296 55100 . - 0 ID=Physo136735;Parent=Physo136735;rank=2 scaffold_48 . exon 54296 55100 . - . ID=Physo136735.2;Parent=Physo136735;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 55171 55758 . - 0 ID=Physo136735;Parent=Physo136735;rank=1 scaffold_48 . exon 55171 55758 . - . ID=Physo136735.1;Parent=Physo136735;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 56284 58690 . + . ID=Physo136736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480015;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 56284 58690 . + . ID=Physo136736;Parent=Physo136736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 56284 57109 . + 0 ID=Physo136736;Parent=Physo136736;rank=1 scaffold_48 . exon 56284 57109 . + . ID=Physo136736.1;Parent=Physo136736;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 57166 57561 . + 0 ID=Physo136736;Parent=Physo136736;rank=2 scaffold_48 . exon 57166 57561 . + . ID=Physo136736.2;Parent=Physo136736;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 57780 58263 . + 0 ID=Physo136736;Parent=Physo136736;rank=3 scaffold_48 . exon 57780 58263 . + . ID=Physo136736.3;Parent=Physo136736;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_48 . CDS 58393 58523 . + 0 ID=Physo136736;Parent=Physo136736;rank=4 scaffold_48 . exon 58393 58523 . + . ID=Physo136736.4;Parent=Physo136736;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_48 . CDS 58629 58690 . + 0 ID=Physo136736;Parent=Physo136736;rank=5 scaffold_48 . exon 58629 58690 . + . ID=Physo136736.5;Parent=Physo136736;constitutive=1;ensembl_phase=1;rank=5 scaffold_48 . repeat_region 59491 59670 . - . description=Polinton-1_PI scaffold_48 . biological_region 63833 63837 0.999 - . logic_name=eponine scaffold_48 . repeat_region 66306 66519 . - . description=Polinton-1_PI scaffold_48 ensembl protein_coding_gene 59917 61322 . + . ID=Physo136737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480016;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 59917 61322 . + . ID=Physo136737;Parent=Physo136737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 59917 60596 . + 0 ID=Physo136737;Parent=Physo136737;rank=1 scaffold_48 . exon 59917 60596 . + . ID=Physo136737.1;Parent=Physo136737;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 60844 61174 . + 0 ID=Physo136737;Parent=Physo136737;rank=2 scaffold_48 . exon 60844 61174 . + . ID=Physo136737.2;Parent=Physo136737;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 61284 61322 . + 0 ID=Physo136737;Parent=Physo136737;rank=3 scaffold_48 . exon 61284 61322 . + . ID=Physo136737.3;Parent=Physo136737;constitutive=1;rank=3 scaffold_48 ensembl protein_coding_gene 61463 63899 . - . ID=Physo136738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480017;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 61463 63899 . - . ID=Physo136738;Parent=Physo136738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 61463 62507 . - 0 ID=Physo136738;Parent=Physo136738;rank=2 scaffold_48 . exon 61463 62507 . - . ID=Physo136738.2;Parent=Physo136738;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 62713 63899 . - 0 ID=Physo136738;Parent=Physo136738;rank=1 scaffold_48 . exon 62713 63899 . - . ID=Physo136738.1;Parent=Physo136738;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 67438 68927 . + . ID=Physo136739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480018;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 67438 68927 . + . ID=Physo136739;Parent=Physo136739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 67438 67481 . + 0 ID=Physo136739;Parent=Physo136739;rank=1 scaffold_48 . exon 67438 67481 . + . ID=Physo136739.1;Parent=Physo136739;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 67625 67685 . + 0 ID=Physo136739;Parent=Physo136739;rank=2 scaffold_48 . exon 67625 67685 . + . ID=Physo136739.2;Parent=Physo136739;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 67794 68927 . + 0 ID=Physo136739;Parent=Physo136739;rank=3 scaffold_48 . exon 67794 68927 . + . ID=Physo136739.3;Parent=Physo136739;constitutive=1;rank=3 scaffold_48 . repeat_region 71334 71866 . ? . description=dust scaffold_48 . repeat_region 72239 72272 . ? . description=trf scaffold_48 . repeat_region 73033 73105 . ? . description=dust scaffold_48 . repeat_region 73033 73105 . ? . description=trf scaffold_48 . repeat_region 73033 73105 . + . description=(GTATG)n scaffold_48 . repeat_region 73777 80150 . ? . description=dust scaffold_48 . biological_region 86622 86624 0.999 + . logic_name=eponine scaffold_48 . biological_region 86636 86641 0.999 - . logic_name=eponine scaffold_48 . biological_region 86652 86655 0.999 - . logic_name=eponine scaffold_48 . biological_region 86953 86956 0.999 - . logic_name=eponine scaffold_48 . biological_region 87190 87191 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 86598 87834 . - . ID=Physo136740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480019;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 86598 87834 . - . ID=Physo136740;Parent=Physo136740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 86598 87080 . - 0 ID=Physo136740;Parent=Physo136740;rank=3 scaffold_48 . exon 86598 87080 . - . ID=Physo136740.3;Parent=Physo136740;constitutive=1;rank=3 scaffold_48 . CDS 87108 87390 . - 0 ID=Physo136740;Parent=Physo136740;rank=2 scaffold_48 . exon 87108 87390 . - . ID=Physo136740.2;Parent=Physo136740;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 87827 87834 . - 0 ID=Physo136740;Parent=Physo136740;rank=1 scaffold_48 . exon 87827 87834 . - . ID=Physo136740.1;Parent=Physo136740;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . repeat_region 92899 92907 . ? . description=dust scaffold_48 . repeat_region 93290 93314 . ? . description=trf scaffold_48 . repeat_region 93766 93773 . ? . description=dust scaffold_48 ensembl protein_coding_gene 91824 92255 . - . ID=Physo136741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480020;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 91824 92255 . - . ID=Physo136741;Parent=Physo136741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 91824 92015 . - 0 ID=Physo136741;Parent=Physo136741;rank=3 scaffold_48 . exon 91824 92015 . - . ID=Physo136741.3;Parent=Physo136741;constitutive=1;rank=3 scaffold_48 . CDS 92044 92202 . - 0 ID=Physo136741;Parent=Physo136741;rank=2 scaffold_48 . exon 92044 92202 . - . ID=Physo136741.2;Parent=Physo136741;constitutive=1;rank=2 scaffold_48 . CDS 92244 92255 . - 0 ID=Physo136741;Parent=Physo136741;rank=1 scaffold_48 . exon 92244 92255 . - . ID=Physo136741.1;Parent=Physo136741;constitutive=1;rank=1 scaffold_48 . biological_region 102743 102745 0.999 + . logic_name=eponine scaffold_48 . biological_region 107511 107513 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 101653 103029 . + . ID=Physo136742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480021;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 101653 103029 . + . ID=Physo136742;Parent=Physo136742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 101653 101968 . + 0 ID=Physo136742;Parent=Physo136742;rank=1 scaffold_48 . exon 101653 101968 . + . ID=Physo136742.1;Parent=Physo136742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 102183 102208 . + 0 ID=Physo136742;Parent=Physo136742;rank=2 scaffold_48 . exon 102183 102208 . + . ID=Physo136742.2;Parent=Physo136742;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 102434 102554 . + 0 ID=Physo136742;Parent=Physo136742;rank=3 scaffold_48 . exon 102434 102554 . + . ID=Physo136742.3;Parent=Physo136742;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 102626 103029 . + 0 ID=Physo136742;Parent=Physo136742;rank=4 scaffold_48 . exon 102626 103029 . + . ID=Physo136742.4;Parent=Physo136742;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 ensembl protein_coding_gene 103843 106666 . - . ID=Physo136743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480022;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 103843 106666 . - . ID=Physo136743;Parent=Physo136743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 103843 104779 . - 0 ID=Physo136743;Parent=Physo136743;rank=2 scaffold_48 . exon 103843 104779 . - . ID=Physo136743.2;Parent=Physo136743;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 105267 106666 . - 0 ID=Physo136743;Parent=Physo136743;rank=1 scaffold_48 . exon 105267 106666 . - . ID=Physo136743.1;Parent=Physo136743;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 107359 109476 . - . ID=Physo136744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480023;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 107359 109476 . - . ID=Physo136744;Parent=Physo136744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 107359 107361 . - 0 ID=Physo136744;Parent=Physo136744;rank=4 scaffold_48 . exon 107359 107361 . - . ID=Physo136744.4;Parent=Physo136744;constitutive=1;rank=4 scaffold_48 . CDS 107761 108531 . - 0 ID=Physo136744;Parent=Physo136744;rank=3 scaffold_48 . exon 107761 108531 . - . ID=Physo136744.3;Parent=Physo136744;constitutive=1;rank=3 scaffold_48 . CDS 108774 108979 . - 0 ID=Physo136744;Parent=Physo136744;rank=2 scaffold_48 . exon 108774 108979 . - . ID=Physo136744.2;Parent=Physo136744;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 109065 109476 . - 0 ID=Physo136744;Parent=Physo136744;rank=1 scaffold_48 . repeat_region 109118 109187 . ? . description=trf scaffold_48 . repeat_region 110629 110707 . ? . description=trf scaffold_48 . repeat_region 110656 110711 . ? . description=dust scaffold_48 . repeat_region 110657 110707 . ? . description=trf scaffold_48 . repeat_region 110788 110844 . ? . description=trf scaffold_48 . repeat_region 112703 112724 . ? . description=dust scaffold_48 . repeat_region 115379 115387 . ? . description=dust scaffold_48 . exon 109065 109476 . - . ID=Physo136744.1;Parent=Physo136744;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 113552 114344 . + . ID=Physo136745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480024;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 113552 114344 . + . ID=Physo136745;Parent=Physo136745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 113552 114199 . + 0 ID=Physo136745;Parent=Physo136745;rank=1 scaffold_48 . exon 113552 114344 . + . ID=Physo136745.1;Parent=Physo136745;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 115688 118535 . + . ID=Physo136746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480025;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 115688 118535 . + . ID=Physo136746;Parent=Physo136746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 115688 117667 . + 0 ID=Physo136746;Parent=Physo136746;rank=1 scaffold_48 . exon 115688 117667 . + . ID=Physo136746.1;Parent=Physo136746;constitutive=1;rank=1 scaffold_48 . CDS 117753 118535 . + 0 ID=Physo136746;Parent=Physo136746;rank=2 scaffold_48 . exon 117753 118535 . + . ID=Physo136746.2;Parent=Physo136746;constitutive=1;rank=2 scaffold_48 ensembl protein_coding_gene 118617 120298 . - . ID=Physo136747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480026;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 118617 120298 . - . ID=Physo136747;Parent=Physo136747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 118617 119837 . - 0 ID=Physo136747;Parent=Physo136747;rank=2 scaffold_48 . exon 118617 119837 . - . ID=Physo136747.2;Parent=Physo136747;constitutive=1;rank=2 scaffold_48 . CDS 119939 120298 . - 0 ID=Physo136747;Parent=Physo136747;rank=1 scaffold_48 . repeat_region 118997 119169 . + . description=(CTG)n scaffold_48 . repeat_region 119358 119534 . + . description=(TTG)n scaffold_48 . exon 119939 120298 . - . ID=Physo136747.1;Parent=Physo136747;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 122347 123573 . - . ID=Physo136749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480028;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 122347 123573 . - . ID=Physo136749;Parent=Physo136749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 122347 123573 . - 0 ID=Physo136749;Parent=Physo136749;rank=1 scaffold_48 . exon 122347 123573 . - . ID=Physo136749.1;Parent=Physo136749;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 128109 129251 . - . ID=Physo136751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480030;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 128109 129251 . - . ID=Physo136751;Parent=Physo136751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 128109 128869 . - 0 ID=Physo136751;Parent=Physo136751;rank=2 scaffold_48 . exon 128109 128869 . - . ID=Physo136751.2;Parent=Physo136751;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 128944 129124 . - 0 ID=Physo136751;Parent=Physo136751;rank=1 scaffold_48 ensembl protein_coding_gene 120603 122289 . + . ID=Physo157484;biotype=protein_coding;external_name=C_scaffold_48000005;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 120603 122289 . + . ID=Physo157484;Parent=Physo157484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 120603 120699 . + 0 ID=Physo157484;Parent=Physo157484;rank=1 scaffold_48 . exon 120603 120699 . + . ID=Physo157484.1;Parent=Physo157484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 120779 120879 . + 0 ID=Physo157484;Parent=Physo157484;rank=2 scaffold_48 . exon 120779 120879 . + . ID=Physo157484.2;Parent=Physo157484;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 121145 121303 . + 0 ID=Physo157484;Parent=Physo157484;rank=3 scaffold_48 . exon 121145 121303 . + . ID=Physo157484.3;Parent=Physo157484;constitutive=1;rank=3 scaffold_48 . CDS 121381 121505 . + 0 ID=Physo157484;Parent=Physo157484;rank=4 scaffold_48 . exon 121381 121505 . + . ID=Physo157484.4;Parent=Physo157484;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 121563 122289 . + 0 ID=Physo157484;Parent=Physo157484;rank=5 scaffold_48 . exon 121563 122289 . + . ID=Physo157484.5;Parent=Physo157484;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 ensembl protein_coding_gene 124129 127886 . + . ID=Physo157486;biotype=protein_coding;external_name=C_scaffold_48000007;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 124129 127886 . + . ID=Physo157486;Parent=Physo157486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 124129 126709 . + 0 ID=Physo157486;Parent=Physo157486;rank=1 scaffold_48 . exon 124129 126709 . + . ID=Physo157486.1;Parent=Physo157486;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 126896 126969 . + 0 ID=Physo157486;Parent=Physo157486;rank=2 scaffold_48 . exon 126896 126969 . + . ID=Physo157486.2;Parent=Physo157486;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 127021 127319 . + 0 ID=Physo157486;Parent=Physo157486;rank=3 scaffold_48 . exon 127021 127319 . + . ID=Physo157486.3;Parent=Physo157486;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_48 . CDS 127365 127557 . + 0 ID=Physo157486;Parent=Physo157486;rank=4 scaffold_48 . exon 127365 127557 . + . ID=Physo157486.4;Parent=Physo157486;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 . CDS 127582 127761 . + 0 ID=Physo157486;Parent=Physo157486;rank=5 scaffold_48 . exon 127582 127761 . + . ID=Physo157486.5;Parent=Physo157486;constitutive=1;rank=5 scaffold_48 . CDS 127863 127886 . + 0 ID=Physo157486;Parent=Physo157486;rank=6 scaffold_48 . exon 127863 127886 . + . ID=Physo157486.6;Parent=Physo157486;constitutive=1;rank=6 scaffold_48 . biological_region 129036 129039 0.999 + . logic_name=eponine scaffold_48 . biological_region 130672 130674 0.999 + . logic_name=eponine scaffold_48 . biological_region 130735 130738 0.999 + . logic_name=eponine scaffold_48 . biological_region 130738 130740 0.999 - . logic_name=eponine scaffold_48 . biological_region 130784 130786 0.999 - . logic_name=eponine scaffold_48 . biological_region 130889 130891 0.999 - . logic_name=eponine scaffold_48 . biological_region 130953 130957 0.999 - . logic_name=eponine scaffold_48 . repeat_region 134609 134628 . ? . description=trf scaffold_48 . biological_region 136228 136229 0.999 + . logic_name=eponine scaffold_48 . biological_region 136537 136541 0.999 + . logic_name=eponine scaffold_48 . repeat_region 137307 137345 . ? . description=trf scaffold_48 . biological_region 138271 138272 0.999 + . logic_name=eponine scaffold_48 . exon 128944 129251 . - . ID=Physo136751.1;Parent=Physo136751;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 129358 130881 . - . ID=Physo136752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480031;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 129358 130881 . - . ID=Physo136752;Parent=Physo136752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 129358 130881 . - . ID=Physo136752.1;Parent=Physo136752;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 . CDS 129409 130881 . - 0 ID=Physo136752;Parent=Physo136752;rank=1 scaffold_48 ensembl protein_coding_gene 131467 132957 . - . ID=Physo136753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480032;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 131467 132957 . - . ID=Physo136753;Parent=Physo136753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 131467 132957 . - 0 ID=Physo136753;Parent=Physo136753;rank=1 scaffold_48 . exon 131467 132957 . - . ID=Physo136753.1;Parent=Physo136753;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 134922 136376 . - . ID=Physo136754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480033;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 134922 136376 . - . ID=Physo136754;Parent=Physo136754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 134922 136376 . - 0 ID=Physo136754;Parent=Physo136754;rank=1 scaffold_48 . exon 134922 136376 . - . ID=Physo136754.1;Parent=Physo136754;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 138262 139055 . + . ID=Physo136755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480034;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 138262 139055 . + . ID=Physo136755;Parent=Physo136755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 138262 138448 . + 0 ID=Physo136755;Parent=Physo136755;rank=1 scaffold_48 . exon 138262 138448 . + . ID=Physo136755.1;Parent=Physo136755;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 138592 138859 . + 0 ID=Physo136755;Parent=Physo136755;rank=2 scaffold_48 . exon 138592 138859 . + . ID=Physo136755.2;Parent=Physo136755;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_48 . CDS 138926 139055 . + 0 ID=Physo136755;Parent=Physo136755;rank=3 scaffold_48 . repeat_region 139111 139160 . ? . description=dust scaffold_48 . repeat_region 142011 142020 . ? . description=dust scaffold_48 . repeat_region 145240 145261 . ? . description=dust scaffold_48 . exon 138926 139055 . + . ID=Physo136755.3;Parent=Physo136755;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 ensembl protein_coding_gene 142317 144271 . + . ID=Physo136756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480035;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 142317 144271 . + . ID=Physo136756;Parent=Physo136756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 142317 142327 . + 0 ID=Physo136756;Parent=Physo136756;rank=1 scaffold_48 . exon 142317 142327 . + . ID=Physo136756.1;Parent=Physo136756;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 142719 143313 . + 0 ID=Physo136756;Parent=Physo136756;rank=2 scaffold_48 . exon 142719 143313 . + . ID=Physo136756.2;Parent=Physo136756;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 143393 144271 . + 0 ID=Physo136756;Parent=Physo136756;rank=3 scaffold_48 . exon 143393 144271 . + . ID=Physo136756.3;Parent=Physo136756;constitutive=1;rank=3 scaffold_48 . biological_region 150721 150728 0.999 + . logic_name=eponine scaffold_48 . repeat_region 152073 152093 . ? . description=trf scaffold_48 . biological_region 152973 152974 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 150593 152170 . - . ID=Physo136757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480036;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 150593 152170 . - . ID=Physo136757;Parent=Physo136757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 150593 151471 . - 0 ID=Physo136757;Parent=Physo136757;rank=3 scaffold_48 . exon 150593 151471 . - . ID=Physo136757.3;Parent=Physo136757;constitutive=1;rank=3 scaffold_48 . CDS 151551 151965 . - 0 ID=Physo136757;Parent=Physo136757;rank=2 scaffold_48 . exon 151551 151965 . - . ID=Physo136757.2;Parent=Physo136757;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 151992 152170 . - 0 ID=Physo136757;Parent=Physo136757;rank=1 scaffold_48 . exon 151992 152170 . - . ID=Physo136757.1;Parent=Physo136757;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 154376 155738 . - . ID=Physo136758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480037;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 154376 155738 . - . ID=Physo136758;Parent=Physo136758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 154376 154394 . - 0 ID=Physo136758;Parent=Physo136758;rank=2 scaffold_48 . exon 154376 154394 . - . ID=Physo136758.2;Parent=Physo136758;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 154462 155738 . - 0 ID=Physo136758;Parent=Physo136758;rank=1 scaffold_48 . exon 154462 155738 . - . ID=Physo136758.1;Parent=Physo136758;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . repeat_region 165238 165416 . - . description=Polinton-1_PI scaffold_48 . repeat_region 165534 165544 . ? . description=dust scaffold_48 ensembl protein_coding_gene 160075 161577 . + . ID=Physo136759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480038;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 160075 161577 . + . ID=Physo136759;Parent=Physo136759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 160075 161577 . + 0 ID=Physo136759;Parent=Physo136759;rank=1 scaffold_48 . exon 160075 161577 . + . ID=Physo136759.1;Parent=Physo136759;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 164616 165405 . - . ID=Physo136760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480039;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 164616 165405 . - . ID=Physo136760;Parent=Physo136760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 164616 164639 . - 0 ID=Physo136760;Parent=Physo136760;rank=3 scaffold_48 . exon 164616 164639 . - . ID=Physo136760.3;Parent=Physo136760;constitutive=1;rank=3 scaffold_48 . CDS 164783 165080 . - 0 ID=Physo136760;Parent=Physo136760;rank=2 scaffold_48 . exon 164783 165080 . - . ID=Physo136760.2;Parent=Physo136760;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 165242 165405 . - 0 ID=Physo136760;Parent=Physo136760;rank=1 scaffold_48 . exon 165242 165405 . - . ID=Physo136760.1;Parent=Physo136760;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . biological_region 173746 173750 0.999 - . logic_name=eponine scaffold_48 . repeat_region 173777 173803 . ? . description=trf scaffold_48 . biological_region 173930 173934 0.999 + . logic_name=eponine scaffold_48 . biological_region 174152 174154 0.999 - . logic_name=eponine scaffold_48 . biological_region 174171 174172 0.999 + . logic_name=eponine scaffold_48 . biological_region 174301 174306 0.999 - . logic_name=eponine scaffold_48 . biological_region 174353 174354 0.999 - . logic_name=eponine scaffold_48 . biological_region 175047 175049 0.999 + . logic_name=eponine scaffold_48 . biological_region 175643 175646 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 173834 178080 . + . ID=Physo136761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480040;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 173834 178080 . + . ID=Physo136761;Parent=Physo136761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 173834 177763 . + 0 ID=Physo136761;Parent=Physo136761;rank=1 scaffold_48 . exon 173834 177763 . + . ID=Physo136761.1;Parent=Physo136761;constitutive=1;rank=1 scaffold_48 . CDS 177841 178080 . + 0 ID=Physo136761;Parent=Physo136761;rank=2 scaffold_48 . exon 177841 178080 . + . ID=Physo136761.2;Parent=Physo136761;constitutive=1;rank=2 scaffold_48 ensembl protein_coding_gene 178392 181034 . - . ID=Physo136762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480041;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 178392 181034 . - . ID=Physo136762;Parent=Physo136762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 178392 178564 . - 0 ID=Physo136762;Parent=Physo136762;rank=3 scaffold_48 . exon 178392 178564 . - . ID=Physo136762.3;Parent=Physo136762;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 178631 178777 . - 0 ID=Physo136762;Parent=Physo136762;rank=2 scaffold_48 . CDS 178847 181034 . - 0 ID=Physo136762;Parent=Physo136762;rank=1 scaffold_48 . repeat_region 180463 180518 . ? . description=dust scaffold_48 . repeat_region 185166 185184 . ? . description=dust scaffold_48 . exon 178631 178777 . - . ID=Physo136762.2;Parent=Physo136762;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . exon 178847 181034 . - . ID=Physo136762.1;Parent=Physo136762;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 181898 184074 . - . ID=Physo136763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480042;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 181898 184074 . - . ID=Physo136763;Parent=Physo136763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 181898 182411 . - . ID=Physo136763.7;Parent=Physo136763;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_48 . CDS 181986 182411 . - 0 ID=Physo136763;Parent=Physo136763;rank=7 scaffold_48 . CDS 182482 182581 . - 0 ID=Physo136763;Parent=Physo136763;rank=6 scaffold_48 . exon 182482 182581 . - . ID=Physo136763.6;Parent=Physo136763;constitutive=1;ensembl_phase=2;rank=6 scaffold_48 . CDS 182655 182929 . - 0 ID=Physo136763;Parent=Physo136763;rank=5 scaffold_48 . exon 182655 182929 . - . ID=Physo136763.5;Parent=Physo136763;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_48 . CDS 183013 183097 . - 0 ID=Physo136763;Parent=Physo136763;rank=4 scaffold_48 . exon 183013 183097 . - . ID=Physo136763.4;Parent=Physo136763;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 . CDS 183171 183289 . - 0 ID=Physo136763;Parent=Physo136763;rank=3 scaffold_48 . exon 183171 183289 . - . ID=Physo136763.3;Parent=Physo136763;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_48 . CDS 183366 183975 . - 0 ID=Physo136763;Parent=Physo136763;rank=2 scaffold_48 . exon 183366 183975 . - . ID=Physo136763.2;Parent=Physo136763;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 184049 184074 . - 0 ID=Physo136763;Parent=Physo136763;rank=1 scaffold_48 . exon 184049 184074 . - . ID=Physo136763.1;Parent=Physo136763;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 184477 185125 . + . ID=Physo136764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480043;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 184477 185125 . + . ID=Physo136764;Parent=Physo136764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 184477 184851 . + . ID=Physo136764.1;Parent=Physo136764;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 184479 184851 . + 0 ID=Physo136764;Parent=Physo136764;rank=1 scaffold_48 . CDS 184940 184986 . + 0 ID=Physo136764;Parent=Physo136764;rank=2 scaffold_48 . exon 184940 185125 . + . ID=Physo136764.2;Parent=Physo136764;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_48 ensembl protein_coding_gene 188325 188657 . - . ID=Physo136765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480044;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 188325 188657 . - . ID=Physo136765;Parent=Physo136765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 188325 188657 . - 0 ID=Physo136765;Parent=Physo136765;rank=1 scaffold_48 . exon 188325 188657 . - . ID=Physo136765.1;Parent=Physo136765;constitutive=1;rank=1 scaffold_48 . biological_region 188456 188457 0.999 - . logic_name=eponine scaffold_48 . biological_region 189086 189091 0.999 + . logic_name=eponine scaffold_48 . biological_region 189110 189116 0.999 + . logic_name=eponine scaffold_48 . biological_region 189191 189194 0.999 + . logic_name=eponine scaffold_48 . biological_region 189213 189214 0.999 - . logic_name=eponine scaffold_48 . biological_region 189216 189220 0.999 + . logic_name=eponine scaffold_48 . biological_region 189268 189268 0.999 + . logic_name=eponine scaffold_48 . biological_region 189282 189283 0.999 - . logic_name=eponine scaffold_48 . biological_region 189357 189358 0.999 - . logic_name=eponine scaffold_48 . biological_region 189363 189363 0.999 + . logic_name=eponine scaffold_48 . biological_region 189410 189413 0.999 + . logic_name=eponine scaffold_48 . biological_region 192871 192872 0.999 + . logic_name=eponine scaffold_48 . biological_region 194614 194616 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 188914 189949 . + . ID=Physo136766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480045;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 188914 189949 . + . ID=Physo136766;Parent=Physo136766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 188914 189885 . + 0 ID=Physo136766;Parent=Physo136766;rank=1 scaffold_48 . exon 188914 189949 . + . ID=Physo136766.1;Parent=Physo136766;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 190306 191307 . + . ID=Physo136767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480046;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 190306 191307 . + . ID=Physo136767;Parent=Physo136767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 190306 191277 . + 0 ID=Physo136767;Parent=Physo136767;rank=1 scaffold_48 . exon 190306 191307 . + . ID=Physo136767.1;Parent=Physo136767;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 191571 193126 . - . ID=Physo136768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480047;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 191571 193126 . - . ID=Physo136768;Parent=Physo136768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 191571 191584 . - 0 ID=Physo136768;Parent=Physo136768;rank=4 scaffold_48 . exon 191571 191584 . - . ID=Physo136768.4;Parent=Physo136768;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 191614 192284 . - 0 ID=Physo136768;Parent=Physo136768;rank=3 scaffold_48 . exon 191614 192284 . - . ID=Physo136768.3;Parent=Physo136768;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 192367 193031 . - 0 ID=Physo136768;Parent=Physo136768;rank=2 scaffold_48 . exon 192367 193031 . - . ID=Physo136768.2;Parent=Physo136768;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 193079 193126 . - 0 ID=Physo136768;Parent=Physo136768;rank=1 scaffold_48 . exon 193079 193126 . - . ID=Physo136768.1;Parent=Physo136768;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 194078 197122 . + . ID=Physo157489;biotype=protein_coding;external_name=C_scaffold_48000010;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 194078 197122 . + . ID=Physo157489;Parent=Physo157489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 194078 194404 . + 0 ID=Physo157489;Parent=Physo157489;rank=1 scaffold_48 . exon 194078 194404 . + . ID=Physo157489.1;Parent=Physo157489;constitutive=1;rank=1 scaffold_48 . CDS 194441 195112 . + 0 ID=Physo157489;Parent=Physo157489;rank=2 scaffold_48 . exon 194441 195112 . + . ID=Physo157489.2;Parent=Physo157489;constitutive=1;rank=2 scaffold_48 . CDS 195510 195735 . + 0 ID=Physo157489;Parent=Physo157489;rank=3 scaffold_48 . exon 195510 195735 . + . ID=Physo157489.3;Parent=Physo157489;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 195820 195870 . + 0 ID=Physo157489;Parent=Physo157489;rank=4 scaffold_48 . exon 195820 195870 . + . ID=Physo157489.4;Parent=Physo157489;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 195940 196646 . + 0 ID=Physo157489;Parent=Physo157489;rank=5 scaffold_48 . exon 195940 196646 . + . ID=Physo157489.5;Parent=Physo157489;constitutive=1;ensembl_phase=1;rank=5 scaffold_48 . CDS 196763 197122 . + 0 ID=Physo157489;Parent=Physo157489;rank=6 scaffold_48 . exon 196763 197122 . + . ID=Physo157489.6;Parent=Physo157489;constitutive=1;rank=6 scaffold_48 . repeat_region 198388 198436 . ? . description=trf scaffold_48 . repeat_region 198851 198893 . ? . description=trf scaffold_48 ensembl protein_coding_gene 203484 204764 . - . ID=Physo108972;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_480001;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 203484 204764 . - . ID=Physo108972;Parent=Physo108972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 203484 204764 . - . ID=Physo108972.1;Parent=Physo108972;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 . CDS 203637 204764 . - 0 ID=Physo108972;Parent=Physo108972;rank=1 scaffold_48 ensembl protein_coding_gene 199619 199816 . + . ID=Physo118074;biotype=protein_coding;external_name=estExt_Genewise1.C_480070;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 199619 199816 . + . ID=Physo118074;Parent=Physo118074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 199619 199816 . + . ID=Physo118074.1;Parent=Physo118074;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 199721 199816 . + 0 ID=Physo118074;Parent=Physo118074;rank=1 scaffold_48 ensembl protein_coding_gene 201948 203468 . + . ID=Physo136771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480050;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 201948 203468 . + . ID=Physo136771;Parent=Physo136771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 201948 202179 . + 0 ID=Physo136771;Parent=Physo136771;rank=1 scaffold_48 . exon 201948 202179 . + . ID=Physo136771.1;Parent=Physo136771;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 202262 202941 . + 0 ID=Physo136771;Parent=Physo136771;rank=2 scaffold_48 . exon 202262 202941 . + . ID=Physo136771.2;Parent=Physo136771;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 203019 203468 . + 0 ID=Physo136771;Parent=Physo136771;rank=3 scaffold_48 . exon 203019 203468 . + . ID=Physo136771.3;Parent=Physo136771;constitutive=1;rank=3 scaffold_48 ensembl protein_coding_gene 206305 207600 . + . ID=Physo136774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480053;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 206305 207600 . + . ID=Physo136774;Parent=Physo136774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 206305 206376 . + 0 ID=Physo136774;Parent=Physo136774;rank=1 scaffold_48 . exon 206305 206376 . + . ID=Physo136774.1;Parent=Physo136774;constitutive=1;rank=1 scaffold_48 . CDS 206440 207600 . + 0 ID=Physo136774;Parent=Physo136774;rank=2 scaffold_48 . exon 206440 207600 . + . ID=Physo136774.2;Parent=Physo136774;constitutive=1;rank=2 scaffold_48 . repeat_region 209685 209715 . ? . description=dust scaffold_48 . repeat_region 213089 213109 . ? . description=dust scaffold_48 . repeat_region 216422 216482 . ? . description=dust scaffold_48 ensembl protein_coding_gene 208986 209592 . + . ID=Physo136775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480054;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 208986 209592 . + . ID=Physo136775;Parent=Physo136775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 208986 209378 . + 0 ID=Physo136775;Parent=Physo136775;rank=1 scaffold_48 . exon 208986 209378 . + . ID=Physo136775.1;Parent=Physo136775;constitutive=1;rank=1 scaffold_48 . CDS 209437 209592 . + 0 ID=Physo136775;Parent=Physo136775;rank=2 scaffold_48 . exon 209437 209592 . + . ID=Physo136775.2;Parent=Physo136775;constitutive=1;rank=2 scaffold_48 ensembl protein_coding_gene 216539 218482 . + . ID=Physo136776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480055;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 216539 218482 . + . ID=Physo136776;Parent=Physo136776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 216539 218377 . + 0 ID=Physo136776;Parent=Physo136776;rank=1 scaffold_48 . exon 216539 218482 . + . ID=Physo136776.1;Parent=Physo136776;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 . biological_region 220218 220227 0.999 + . logic_name=eponine scaffold_48 . repeat_region 223519 223563 . ? . description=trf scaffold_48 . biological_region 227105 227112 0.999 + . logic_name=eponine scaffold_48 . biological_region 227164 227166 0.999 - . logic_name=eponine scaffold_48 . biological_region 227199 227204 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 221828 222985 . + . ID=Physo136777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480056;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 221828 222985 . + . ID=Physo136777;Parent=Physo136777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 221828 222985 . + 0 ID=Physo136777;Parent=Physo136777;rank=1 scaffold_48 . exon 221828 222985 . + . ID=Physo136777.1;Parent=Physo136777;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 225634 228885 . - . ID=Physo157490;biotype=protein_coding;external_name=C_scaffold_48000011;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 225634 228885 . - . ID=Physo157490;Parent=Physo157490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 225634 225964 . - 0 ID=Physo157490;Parent=Physo157490;rank=10 scaffold_48 . exon 225634 225964 . - . ID=Physo157490.10;Parent=Physo157490;constitutive=1;ensembl_phase=2;rank=10 scaffold_48 . CDS 226043 226139 . - 0 ID=Physo157490;Parent=Physo157490;rank=9 scaffold_48 . exon 226043 226139 . - . ID=Physo157490.9;Parent=Physo157490;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_48 . CDS 226222 226404 . - 0 ID=Physo157490;Parent=Physo157490;rank=8 scaffold_48 . exon 226222 226404 . - . ID=Physo157490.8;Parent=Physo157490;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_48 . CDS 226478 226641 . - 0 ID=Physo157490;Parent=Physo157490;rank=7 scaffold_48 . exon 226478 226641 . - . ID=Physo157490.7;Parent=Physo157490;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_48 . CDS 226710 226928 . - 0 ID=Physo157490;Parent=Physo157490;rank=6 scaffold_48 . exon 226710 226928 . - . ID=Physo157490.6;Parent=Physo157490;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_48 . CDS 227029 227413 . - 0 ID=Physo157490;Parent=Physo157490;rank=5 scaffold_48 . exon 227029 227413 . - . ID=Physo157490.5;Parent=Physo157490;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_48 . CDS 227960 228178 . - 0 ID=Physo157490;Parent=Physo157490;rank=4 scaffold_48 . exon 227960 228178 . - . ID=Physo157490.4;Parent=Physo157490;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 228270 228411 . - 0 ID=Physo157490;Parent=Physo157490;rank=3 scaffold_48 . CDS 228536 228600 . - 0 ID=Physo157490;Parent=Physo157490;rank=2 scaffold_48 . CDS 228642 228885 . - 0 ID=Physo157490;Parent=Physo157490;rank=1 scaffold_48 ensembl protein_coding_gene 231289 231858 . + . ID=Physo136780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480059;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 231289 231858 . + . ID=Physo136780;Parent=Physo136780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 231289 231458 . + . ID=Physo136780.1;Parent=Physo136780;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 231326 231458 . + 0 ID=Physo136780;Parent=Physo136780;rank=1 scaffold_48 . CDS 231525 231661 . + 0 ID=Physo136780;Parent=Physo136780;rank=2 scaffold_48 . exon 231525 231661 . + . ID=Physo136780.2;Parent=Physo136780;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 231727 231780 . + 0 ID=Physo136780;Parent=Physo136780;rank=3 scaffold_48 . exon 231727 231858 . + . ID=Physo136780.3;Parent=Physo136780;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_48 ensembl protein_coding_gene 231839 233156 . - . ID=Physo136781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480060;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 231839 233156 . - . ID=Physo136781;Parent=Physo136781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 231839 232535 . - . ID=Physo136781.5;Parent=Physo136781;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_48 . CDS 231900 232535 . - 0 ID=Physo136781;Parent=Physo136781;rank=5 scaffold_48 . CDS 232614 232714 . - 0 ID=Physo136781;Parent=Physo136781;rank=4 scaffold_48 . exon 232614 232714 . - . ID=Physo136781.4;Parent=Physo136781;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 232794 232839 . - 0 ID=Physo136781;Parent=Physo136781;rank=3 scaffold_48 . exon 232794 232839 . - . ID=Physo136781.3;Parent=Physo136781;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 232923 232930 . - 0 ID=Physo136781;Parent=Physo136781;rank=2 scaffold_48 . exon 232923 232930 . - . ID=Physo136781.2;Parent=Physo136781;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 233005 233146 . - 0 ID=Physo136781;Parent=Physo136781;rank=1 scaffold_48 . exon 233005 233156 . - . ID=Physo136781.1;Parent=Physo136781;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 233846 234769 . - . ID=Physo136782;biotype=protein_coding;description=Putative nuclear LIM interactor-interacting protein [Source:UniProtKB/TrEMBL%3BAcc:Q5S7T2];external_name=NIF5;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 233846 234769 . - . ID=Physo136782;Parent=Physo136782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 233846 234769 . - . ID=Physo136782.1;Parent=Physo136782;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 . CDS 234056 234769 . - 0 ID=Physo136782;Parent=Physo136782;rank=1 scaffold_48 . exon 228270 228411 . - . ID=Physo157490.3;Parent=Physo157490;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . exon 228536 228600 . - . ID=Physo157490.2;Parent=Physo157490;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . exon 228642 228885 . - . ID=Physo157490.1;Parent=Physo157490;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . biological_region 240602 240605 0.999 - . logic_name=eponine scaffold_48 . repeat_region 244297 244354 . ? . description=dust scaffold_48 . repeat_region 244356 244398 . ? . description=trf scaffold_48 . biological_region 244389 244389 0.999 - . logic_name=eponine scaffold_48 . biological_region 245024 245026 0.999 - . logic_name=eponine scaffold_48 . biological_region 245082 245085 0.999 + . logic_name=eponine scaffold_48 . biological_region 245098 245099 0.999 - . logic_name=eponine scaffold_48 . repeat_region 245899 245925 . ? . description=trf scaffold_48 . biological_region 246020 246025 0.999 + . logic_name=eponine scaffold_48 . biological_region 246045 246048 0.999 - . logic_name=eponine scaffold_48 . biological_region 246047 246047 0.999 + . logic_name=eponine scaffold_48 . biological_region 246082 246083 0.999 - . logic_name=eponine scaffold_48 . biological_region 246106 246110 0.999 - . logic_name=eponine scaffold_48 . biological_region 246138 246141 0.999 + . logic_name=eponine scaffold_48 . biological_region 246183 246188 0.999 + . logic_name=eponine scaffold_48 . biological_region 246207 246210 0.999 - . logic_name=eponine scaffold_48 . biological_region 246231 246233 0.999 + . logic_name=eponine scaffold_48 . biological_region 246286 246289 0.999 + . logic_name=eponine scaffold_48 . biological_region 246309 246311 0.999 - . logic_name=eponine scaffold_48 . repeat_region 247338 247365 . ? . description=trf scaffold_48 ensembl protein_coding_gene 243115 244491 . - . ID=Physo108974;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_480003;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 243115 244491 . - . ID=Physo108974;Parent=Physo108974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 243115 243558 . - . ID=Physo108974.5;Parent=Physo108974;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_48 . CDS 243427 243558 . - 0 ID=Physo108974;Parent=Physo108974;rank=5 scaffold_48 . CDS 243642 243881 . - 0 ID=Physo108974;Parent=Physo108974;rank=4 scaffold_48 . exon 243642 243881 . - . ID=Physo108974.4;Parent=Physo108974;constitutive=1;rank=4 scaffold_48 . CDS 243963 244063 . - 0 ID=Physo108974;Parent=Physo108974;rank=3 scaffold_48 . exon 243963 244063 . - . ID=Physo108974.3;Parent=Physo108974;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 244153 244243 . - 0 ID=Physo108974;Parent=Physo108974;rank=2 scaffold_48 . exon 244153 244243 . - . ID=Physo108974.2;Parent=Physo108974;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 244431 244457 . - 0 ID=Physo108974;Parent=Physo108974;rank=1 scaffold_48 . exon 244431 244491 . - . ID=Physo108974.1;Parent=Physo108974;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 240016 242898 . + . ID=Physo136783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480062;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 240016 242898 . + . ID=Physo136783;Parent=Physo136783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 240016 242709 . + 0 ID=Physo136783;Parent=Physo136783;rank=1 scaffold_48 . exon 240016 242898 . + . ID=Physo136783.1;Parent=Physo136783;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 244737 245550 . + . ID=Physo136785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480064;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 244737 245550 . + . ID=Physo136785;Parent=Physo136785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 244737 244852 . + . ID=Physo136785.1;Parent=Physo136785;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 244753 244852 . + 0 ID=Physo136785;Parent=Physo136785;rank=1 scaffold_48 . CDS 244934 245231 . + 0 ID=Physo136785;Parent=Physo136785;rank=2 scaffold_48 . exon 244934 245231 . + . ID=Physo136785.2;Parent=Physo136785;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_48 . CDS 245340 245517 . + 0 ID=Physo136785;Parent=Physo136785;rank=3 scaffold_48 . exon 245340 245550 . + . ID=Physo136785.3;Parent=Physo136785;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_48 ensembl protein_coding_gene 245780 248373 . + . ID=Physo136786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480065;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 245780 248373 . + . ID=Physo136786;Parent=Physo136786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 245780 248218 . + 0 ID=Physo136786;Parent=Physo136786;rank=1 scaffold_48 . exon 245780 248373 . + . ID=Physo136786.1;Parent=Physo136786;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 249034 250813 . - . ID=Physo136787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480066;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 249034 250813 . - . ID=Physo136787;Parent=Physo136787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 249034 249437 . - 0 ID=Physo136787;Parent=Physo136787;rank=4 scaffold_48 . exon 249034 249437 . - . ID=Physo136787.4;Parent=Physo136787;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 249509 249801 . - 0 ID=Physo136787;Parent=Physo136787;rank=3 scaffold_48 . exon 249509 249801 . - . ID=Physo136787.3;Parent=Physo136787;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 249882 250388 . - 0 ID=Physo136787;Parent=Physo136787;rank=2 scaffold_48 . exon 249882 250388 . - . ID=Physo136787.2;Parent=Physo136787;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_48 . CDS 250464 250813 . - 0 ID=Physo136787;Parent=Physo136787;rank=1 scaffold_48 . exon 250464 250813 . - . ID=Physo136787.1;Parent=Physo136787;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 257206 259634 . - . ID=Physo136790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480069;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 257206 259634 . - . ID=Physo136790;Parent=Physo136790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 257206 257556 . - 0 ID=Physo136790;Parent=Physo136790;rank=5 scaffold_48 . exon 257206 257556 . - . ID=Physo136790.5;Parent=Physo136790;constitutive=1;rank=5 scaffold_48 . CDS 258037 258217 . - 0 ID=Physo136790;Parent=Physo136790;rank=4 scaffold_48 . CDS 258296 259148 . - 0 ID=Physo136790;Parent=Physo136790;rank=3 scaffold_48 . CDS 259229 259347 . - 0 ID=Physo136790;Parent=Physo136790;rank=2 scaffold_48 . CDS 259408 259634 . - 0 ID=Physo136790;Parent=Physo136790;rank=1 scaffold_48 ensembl protein_coding_gene 251943 253720 . - . ID=Physo157491;biotype=protein_coding;external_name=C_scaffold_48000012;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 251943 253720 . - . ID=Physo157491;Parent=Physo157491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 251943 252141 . - 0 ID=Physo157491;Parent=Physo157491;rank=2 scaffold_48 . exon 251943 252141 . - . ID=Physo157491.2;Parent=Physo157491;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_48 . CDS 252202 253720 . - 0 ID=Physo157491;Parent=Physo157491;rank=1 scaffold_48 . exon 252202 253720 . - . ID=Physo157491.1;Parent=Physo157491;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 253918 255267 . + . ID=Physo157492;biotype=protein_coding;external_name=C_scaffold_48000013;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 253918 255267 . + . ID=Physo157492;Parent=Physo157492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 253918 253942 . + 0 ID=Physo157492;Parent=Physo157492;rank=1 scaffold_48 . exon 253918 253942 . + . ID=Physo157492.1;Parent=Physo157492;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 254040 254560 . + 0 ID=Physo157492;Parent=Physo157492;rank=2 scaffold_48 . exon 254040 254560 . + . ID=Physo157492.2;Parent=Physo157492;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 254582 254859 . + 0 ID=Physo157492;Parent=Physo157492;rank=3 scaffold_48 . exon 254582 254859 . + . ID=Physo157492.3;Parent=Physo157492;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_48 . CDS 254931 255267 . + 0 ID=Physo157492;Parent=Physo157492;rank=4 scaffold_48 . exon 254931 255267 . + . ID=Physo157492.4;Parent=Physo157492;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 . biological_region 258295 258297 0.999 - . logic_name=eponine scaffold_48 . biological_region 258786 258786 0.999 + . logic_name=eponine scaffold_48 . biological_region 258845 258850 0.999 + . logic_name=eponine scaffold_48 . biological_region 261945 261948 0.999 + . logic_name=eponine scaffold_48 . biological_region 262972 262975 0.999 + . logic_name=eponine scaffold_48 . biological_region 263462 263462 0.999 - . logic_name=eponine scaffold_48 . biological_region 264993 264994 0.999 + . logic_name=eponine scaffold_48 . biological_region 265017 265019 0.999 + . logic_name=eponine scaffold_48 . biological_region 265045 265052 0.999 + . logic_name=eponine scaffold_48 . biological_region 265091 265092 0.999 - . logic_name=eponine scaffold_48 . biological_region 265138 265147 0.999 + . logic_name=eponine scaffold_48 . biological_region 265164 265171 0.999 - . logic_name=eponine scaffold_48 . biological_region 265165 265173 0.999 + . logic_name=eponine scaffold_48 . biological_region 265184 265194 0.999 + . logic_name=eponine scaffold_48 . biological_region 265230 265238 0.999 - . logic_name=eponine scaffold_48 . biological_region 265290 265295 0.999 - . logic_name=eponine scaffold_48 . biological_region 265685 265695 0.999 + . logic_name=eponine scaffold_48 . biological_region 265852 265856 0.999 - . logic_name=eponine scaffold_48 . repeat_region 267112 267213 . ? . description=trf scaffold_48 . exon 258037 258217 . - . ID=Physo136790.4;Parent=Physo136790;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 . exon 258296 259148 . - . ID=Physo136790.3;Parent=Physo136790;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_48 . exon 259229 259347 . - . ID=Physo136790.2;Parent=Physo136790;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_48 . exon 259408 259634 . - . ID=Physo136790.1;Parent=Physo136790;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 260323 264597 . + . ID=Physo136791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480070;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 260323 264597 . + . ID=Physo136791;Parent=Physo136791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 260323 264597 . + 0 ID=Physo136791;Parent=Physo136791;rank=1 scaffold_48 . exon 260323 264597 . + . ID=Physo136791.1;Parent=Physo136791;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 264646 265917 . - . ID=Physo157495;biotype=protein_coding;external_name=C_scaffold_48000016;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 264646 265917 . - . ID=Physo157495;Parent=Physo157495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 264646 264880 . - 0 ID=Physo157495;Parent=Physo157495;rank=3 scaffold_48 . exon 264646 264880 . - . ID=Physo157495.3;Parent=Physo157495;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 264964 265287 . - 0 ID=Physo157495;Parent=Physo157495;rank=2 scaffold_48 . exon 264964 265287 . - . ID=Physo157495.2;Parent=Physo157495;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_48 . CDS 265700 265917 . - 0 ID=Physo157495;Parent=Physo157495;rank=1 scaffold_48 . exon 265700 265917 . - . ID=Physo157495.1;Parent=Physo157495;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . repeat_region 268087 268107 . ? . description=dust scaffold_48 . repeat_region 268442 268461 . ? . description=dust scaffold_48 . repeat_region 269015 269061 . ? . description=dust scaffold_48 . repeat_region 271500 271553 . ? . description=dust scaffold_48 . repeat_region 275853 275866 . ? . description=dust scaffold_48 ensembl protein_coding_gene 268173 271158 . + . ID=Physo136793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480072;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 268173 271158 . + . ID=Physo136793;Parent=Physo136793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 268173 268318 . + 0 ID=Physo136793;Parent=Physo136793;rank=1 scaffold_48 . exon 268173 268318 . + . ID=Physo136793.1;Parent=Physo136793;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 268710 270015 . + 0 ID=Physo136793;Parent=Physo136793;rank=2 scaffold_48 . exon 268710 270015 . + . ID=Physo136793.2;Parent=Physo136793;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 270187 271158 . + 0 ID=Physo136793;Parent=Physo136793;rank=3 scaffold_48 . exon 270187 271158 . + . ID=Physo136793.3;Parent=Physo136793;constitutive=1;rank=3 scaffold_48 ensembl protein_coding_gene 272102 276241 . - . ID=Physo157499;biotype=protein_coding;external_name=C_scaffold_48000020;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 272102 276241 . - . ID=Physo157499;Parent=Physo157499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 272102 272356 . - 0 ID=Physo157499;Parent=Physo157499;rank=11 scaffold_48 . exon 272102 272356 . - . ID=Physo157499.11;Parent=Physo157499;constitutive=1;rank=11 scaffold_48 . CDS 272384 272670 . - 0 ID=Physo157499;Parent=Physo157499;rank=10 scaffold_48 . exon 272384 272670 . - . ID=Physo157499.10;Parent=Physo157499;constitutive=1;ensembl_phase=1;rank=10 scaffold_48 . CDS 272956 273261 . - 0 ID=Physo157499;Parent=Physo157499;rank=9 scaffold_48 . exon 272956 273261 . - . ID=Physo157499.9;Parent=Physo157499;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_48 . CDS 273343 273880 . - 0 ID=Physo157499;Parent=Physo157499;rank=8 scaffold_48 . exon 273343 273880 . - . ID=Physo157499.8;Parent=Physo157499;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_48 . CDS 274211 274279 . - 0 ID=Physo157499;Parent=Physo157499;rank=7 scaffold_48 . exon 274211 274279 . - . ID=Physo157499.7;Parent=Physo157499;constitutive=1;rank=7 scaffold_48 . CDS 274344 274490 . - 0 ID=Physo157499;Parent=Physo157499;rank=6 scaffold_48 . exon 274344 274490 . - . ID=Physo157499.6;Parent=Physo157499;constitutive=1;rank=6 scaffold_48 . CDS 274562 274717 . - 0 ID=Physo157499;Parent=Physo157499;rank=5 scaffold_48 . exon 274562 274717 . - . ID=Physo157499.5;Parent=Physo157499;constitutive=1;rank=5 scaffold_48 . CDS 274751 275389 . - 0 ID=Physo157499;Parent=Physo157499;rank=4 scaffold_48 . exon 274751 275389 . - . ID=Physo157499.4;Parent=Physo157499;constitutive=1;rank=4 scaffold_48 . CDS 275624 275824 . - 0 ID=Physo157499;Parent=Physo157499;rank=3 scaffold_48 . exon 275624 275824 . - . ID=Physo157499.3;Parent=Physo157499;constitutive=1;rank=3 scaffold_48 . CDS 275894 275970 . - 0 ID=Physo157499;Parent=Physo157499;rank=2 scaffold_48 . exon 275894 275970 . - . ID=Physo157499.2;Parent=Physo157499;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 276049 276241 . - 0 ID=Physo157499;Parent=Physo157499;rank=1 scaffold_48 . exon 276049 276241 . - . ID=Physo157499.1;Parent=Physo157499;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 276714 277898 . + . ID=Physo157500;biotype=protein_coding;external_name=C_scaffold_48000021;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 276714 277898 . + . ID=Physo157500;Parent=Physo157500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 276714 276721 . + 0 ID=Physo157500;Parent=Physo157500;rank=1 scaffold_48 . exon 276714 276721 . + . ID=Physo157500.1;Parent=Physo157500;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 276833 276895 . + 0 ID=Physo157500;Parent=Physo157500;rank=2 scaffold_48 . exon 276833 276895 . + . ID=Physo157500.2;Parent=Physo157500;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_48 . CDS 276968 277694 . + 0 ID=Physo157500;Parent=Physo157500;rank=3 scaffold_48 . exon 276968 277694 . + . ID=Physo157500.3;Parent=Physo157500;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 277728 277898 . + 0 ID=Physo157500;Parent=Physo157500;rank=4 scaffold_48 . biological_region 279580 279582 0.999 + . logic_name=eponine scaffold_48 . biological_region 280548 280550 0.999 + . logic_name=eponine scaffold_48 . biological_region 280695 280699 0.999 - . logic_name=eponine scaffold_48 . biological_region 281147 281147 0.999 + . logic_name=eponine scaffold_48 . repeat_region 281166 281189 . ? . description=trf scaffold_48 . repeat_region 281166 281193 . ? . description=trf scaffold_48 . repeat_region 281228 281276 . ? . description=trf scaffold_48 . biological_region 281273 281277 0.999 - . logic_name=eponine scaffold_48 . biological_region 281313 281319 0.999 + . logic_name=eponine scaffold_48 . biological_region 281331 281336 0.999 + . logic_name=eponine scaffold_48 . biological_region 281344 281352 0.999 - . logic_name=eponine scaffold_48 . biological_region 281400 281407 0.999 + . logic_name=eponine scaffold_48 . biological_region 281418 281420 0.999 + . logic_name=eponine scaffold_48 . biological_region 281466 281472 0.999 - . logic_name=eponine scaffold_48 . biological_region 281837 281839 0.999 + . logic_name=eponine scaffold_48 . biological_region 281847 281850 0.999 + . logic_name=eponine scaffold_48 . biological_region 281868 281869 0.999 - . logic_name=eponine scaffold_48 . biological_region 281942 281950 0.999 - . logic_name=eponine scaffold_48 . biological_region 281965 281972 0.999 - . logic_name=eponine scaffold_48 . biological_region 282482 282484 0.999 - . logic_name=eponine scaffold_48 . biological_region 283341 283345 0.999 - . logic_name=eponine scaffold_48 . repeat_region 283510 284032 . ? . description=trf scaffold_48 . repeat_region 283669 284022 . ? . description=trf scaffold_48 . biological_region 285297 285307 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 281981 282751 . + . ID=Physo118006;biotype=protein_coding;external_name=estExt_Genewise1.C_480002;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 281981 282751 . + . ID=Physo118006;Parent=Physo118006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 281981 282751 . + . ID=Physo118006.1;Parent=Physo118006;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 281984 282751 . + 0 ID=Physo118006;Parent=Physo118006;rank=1 scaffold_48 ensembl protein_coding_gene 278320 280000 . - . ID=Physo136796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480075;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 278320 280000 . - . ID=Physo136796;Parent=Physo136796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 278320 279526 . - 0 ID=Physo136796;Parent=Physo136796;rank=2 scaffold_48 . exon 278320 279526 . - . ID=Physo136796.2;Parent=Physo136796;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 279597 280000 . - 0 ID=Physo136796;Parent=Physo136796;rank=1 scaffold_48 . exon 279597 280000 . - . ID=Physo136796.1;Parent=Physo136796;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 280514 281953 . + . ID=Physo136797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480076;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 280514 281953 . + . ID=Physo136797;Parent=Physo136797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 280514 280802 . + 0 ID=Physo136797;Parent=Physo136797;rank=1 scaffold_48 . exon 280514 280802 . + . ID=Physo136797.1;Parent=Physo136797;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 280877 280946 . + 0 ID=Physo136797;Parent=Physo136797;rank=2 scaffold_48 . exon 280877 280946 . + . ID=Physo136797.2;Parent=Physo136797;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_48 . CDS 281028 281085 . + 0 ID=Physo136797;Parent=Physo136797;rank=3 scaffold_48 . exon 281028 281085 . + . ID=Physo136797.3;Parent=Physo136797;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 281138 281543 . + 0 ID=Physo136797;Parent=Physo136797;rank=4 scaffold_48 . exon 281138 281543 . + . ID=Physo136797.4;Parent=Physo136797;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_48 . CDS 281622 281685 . + 0 ID=Physo136797;Parent=Physo136797;rank=5 scaffold_48 . exon 281622 281685 . + . ID=Physo136797.5;Parent=Physo136797;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_48 . CDS 281842 281953 . + 0 ID=Physo136797;Parent=Physo136797;rank=6 scaffold_48 . exon 281842 281953 . + . ID=Physo136797.6;Parent=Physo136797;constitutive=1;ensembl_phase=2;rank=6 scaffold_48 ensembl protein_coding_gene 286869 288843 . - . ID=Physo136800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480079;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 286869 288843 . - . ID=Physo136800;Parent=Physo136800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 286869 287745 . - 0 ID=Physo136800;Parent=Physo136800;rank=2 scaffold_48 . exon 286869 287745 . - . ID=Physo136800.2;Parent=Physo136800;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 287939 288843 . - 0 ID=Physo136800;Parent=Physo136800;rank=1 scaffold_48 . exon 277728 277898 . + . ID=Physo157500.4;Parent=Physo157500;constitutive=1;rank=4 scaffold_48 ensembl protein_coding_gene 284989 285951 . - . ID=Physo157501;biotype=protein_coding;external_name=C_scaffold_48000022;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 284989 285951 . - . ID=Physo157501;Parent=Physo157501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 284989 285951 . - 0 ID=Physo157501;Parent=Physo157501;rank=1 scaffold_48 . exon 284989 285951 . - . ID=Physo157501.1;Parent=Physo157501;constitutive=1;rank=1 scaffold_48 . repeat_region 289172 289198 . ? . description=dust scaffold_48 ensembl protein_coding_gene 293159 294703 . + . ID=Physo108976;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_480005;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 293159 294703 . + . ID=Physo108976;Parent=Physo108976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 293159 294703 . + 0 ID=Physo108976;Parent=Physo108976;rank=1 scaffold_48 . exon 293159 294703 . + . ID=Physo108976.1;Parent=Physo108976;constitutive=1;rank=1 scaffold_48 . exon 287939 288843 . - . ID=Physo136800.1;Parent=Physo136800;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 289160 290718 . + . ID=Physo136801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480080;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 289160 290718 . + . ID=Physo136801;Parent=Physo136801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 289160 289316 . + 0 ID=Physo136801;Parent=Physo136801;rank=1 scaffold_48 . exon 289160 289316 . + . ID=Physo136801.1;Parent=Physo136801;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 289531 289774 . + 0 ID=Physo136801;Parent=Physo136801;rank=2 scaffold_48 . exon 289531 289774 . + . ID=Physo136801.2;Parent=Physo136801;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_48 . CDS 289885 290319 . + 0 ID=Physo136801;Parent=Physo136801;rank=3 scaffold_48 . exon 289885 290319 . + . ID=Physo136801.3;Parent=Physo136801;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_48 . CDS 290358 290718 . + 0 ID=Physo136801;Parent=Physo136801;rank=4 scaffold_48 . exon 290358 290718 . + . ID=Physo136801.4;Parent=Physo136801;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 ensembl protein_coding_gene 291834 292813 . + . ID=Physo136802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480081;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 291834 292813 . + . ID=Physo136802;Parent=Physo136802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 291834 292745 . + 0 ID=Physo136802;Parent=Physo136802;rank=1 scaffold_48 . exon 291834 292813 . + . ID=Physo136802.1;Parent=Physo136802;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 294850 295869 . - . ID=Physo136804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480083;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 294850 295869 . - . ID=Physo136804;Parent=Physo136804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 294850 295112 . - . ID=Physo136804.3;Parent=Physo136804;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_48 . CDS 294979 295112 . - 0 ID=Physo136804;Parent=Physo136804;rank=3 scaffold_48 . CDS 295206 295434 . - 0 ID=Physo136804;Parent=Physo136804;rank=2 scaffold_48 . exon 295206 295434 . - . ID=Physo136804.2;Parent=Physo136804;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 295535 295861 . - 0 ID=Physo136804;Parent=Physo136804;rank=1 scaffold_48 . exon 295535 295869 . - . ID=Physo136804.1;Parent=Physo136804;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 296202 298214 . + . ID=Physo136805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480084;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 296202 298214 . + . ID=Physo136805;Parent=Physo136805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 296202 296471 . + 0 ID=Physo136805;Parent=Physo136805;rank=1 scaffold_48 . exon 296202 296471 . + . ID=Physo136805.1;Parent=Physo136805;constitutive=1;rank=1 scaffold_48 . CDS 296737 298057 . + 0 ID=Physo136805;Parent=Physo136805;rank=2 scaffold_48 . exon 296737 298057 . + . ID=Physo136805.2;Parent=Physo136805;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 298201 298214 . + 0 ID=Physo136805;Parent=Physo136805;rank=3 scaffold_48 . repeat_region 299192 299214 . ? . description=trf scaffold_48 . repeat_region 299201 299269 . ? . description=trf scaffold_48 . repeat_region 299225 299244 . ? . description=trf scaffold_48 . biological_region 299762 299770 0.999 + . logic_name=eponine scaffold_48 . biological_region 299927 299932 0.999 + . logic_name=eponine scaffold_48 . biological_region 300046 300046 0.999 - . logic_name=eponine scaffold_48 . biological_region 303843 303845 0.999 - . logic_name=eponine scaffold_48 . repeat_region 304163 304210 . ? . description=trf scaffold_48 . biological_region 304829 304833 0.999 - . logic_name=eponine scaffold_48 . repeat_region 305656 305702 . ? . description=trf scaffold_48 . repeat_region 305952 306000 . ? . description=trf scaffold_48 . exon 298201 298214 . + . ID=Physo136805.3;Parent=Physo136805;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 ensembl protein_coding_gene 299862 303164 . + . ID=Physo136806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480085;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 299862 303164 . + . ID=Physo136806;Parent=Physo136806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 299862 300633 . + 0 ID=Physo136806;Parent=Physo136806;rank=1 scaffold_48 . exon 299862 300633 . + . ID=Physo136806.1;Parent=Physo136806;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 300714 300842 . + 0 ID=Physo136806;Parent=Physo136806;rank=2 scaffold_48 . exon 300714 300842 . + . ID=Physo136806.2;Parent=Physo136806;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 300916 301379 . + 0 ID=Physo136806;Parent=Physo136806;rank=3 scaffold_48 . exon 300916 301379 . + . ID=Physo136806.3;Parent=Physo136806;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 301458 301565 . + 0 ID=Physo136806;Parent=Physo136806;rank=4 scaffold_48 . exon 301458 301565 . + . ID=Physo136806.4;Parent=Physo136806;constitutive=1;rank=4 scaffold_48 . CDS 301906 302532 . + 0 ID=Physo136806;Parent=Physo136806;rank=5 scaffold_48 . exon 301906 302532 . + . ID=Physo136806.5;Parent=Physo136806;constitutive=1;rank=5 scaffold_48 . CDS 302605 302853 . + 0 ID=Physo136806;Parent=Physo136806;rank=6 scaffold_48 . exon 302605 302853 . + . ID=Physo136806.6;Parent=Physo136806;constitutive=1;rank=6 scaffold_48 . CDS 302924 302962 . + 0 ID=Physo136806;Parent=Physo136806;rank=7 scaffold_48 . exon 302924 303164 . + . ID=Physo136806.7;Parent=Physo136806;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_48 ensembl protein_coding_gene 303308 303889 . - . ID=Physo136807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480086;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 303308 303889 . - . ID=Physo136807;Parent=Physo136807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 303308 303889 . - 0 ID=Physo136807;Parent=Physo136807;rank=1 scaffold_48 . exon 303308 303889 . - . ID=Physo136807.1;Parent=Physo136807;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 304301 305380 . - . ID=Physo136808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480087;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 304301 305380 . - . ID=Physo136808;Parent=Physo136808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 304301 305380 . - 0 ID=Physo136808;Parent=Physo136808;rank=1 scaffold_48 . exon 304301 305380 . - . ID=Physo136808.1;Parent=Physo136808;constitutive=1;rank=1 scaffold_48 . repeat_region 310741 310750 . ? . description=dust scaffold_48 ensembl protein_coding_gene 308405 309456 . - . ID=Physo108977;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_480006;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 308405 309456 . - . ID=Physo108977;Parent=Physo108977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 308405 309442 . - 0 ID=Physo108977;Parent=Physo108977;rank=1 scaffold_48 . exon 308405 309456 . - . ID=Physo108977.1;Parent=Physo108977;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 311871 313113 . - . ID=Physo108978;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_480007;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 311871 313113 . - . ID=Physo108978;Parent=Physo108978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 311871 313113 . - . ID=Physo108978.1;Parent=Physo108978;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 312033 313070 . - 0 ID=Physo108978;Parent=Physo108978;rank=1 scaffold_48 . biological_region 319355 319357 0.999 + . logic_name=eponine scaffold_48 . biological_region 319638 319639 0.999 + . logic_name=eponine scaffold_48 . biological_region 319724 319725 0.999 - . logic_name=eponine scaffold_48 . biological_region 319737 319739 0.999 - . logic_name=eponine scaffold_48 . biological_region 319775 319776 0.999 + . logic_name=eponine scaffold_48 . biological_region 323731 323731 0.999 - . logic_name=eponine scaffold_48 . repeat_region 324670 324719 . ? . description=trf scaffold_48 ensembl protein_coding_gene 325598 326027 . - . ID=Physo136813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480092;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 325598 326027 . - . ID=Physo136813;Parent=Physo136813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 325598 325613 . - 0 ID=Physo136813;Parent=Physo136813;rank=2 scaffold_48 . exon 325598 325613 . - . ID=Physo136813.2;Parent=Physo136813;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 325660 326027 . - 0 ID=Physo136813;Parent=Physo136813;rank=1 scaffold_48 . exon 325660 326027 . - . ID=Physo136813.1;Parent=Physo136813;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 326612 329157 . + . ID=Physo136814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480093;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 326612 329157 . + . ID=Physo136814;Parent=Physo136814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 326612 326864 . + . ID=Physo136814.1;Parent=Physo136814;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 326672 326864 . + 0 ID=Physo136814;Parent=Physo136814;rank=1 scaffold_48 . CDS 326935 327480 . + 0 ID=Physo136814;Parent=Physo136814;rank=2 scaffold_48 . exon 326935 327480 . + . ID=Physo136814.2;Parent=Physo136814;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 327654 328225 . + 0 ID=Physo136814;Parent=Physo136814;rank=3 scaffold_48 . CDS 328300 329157 . + 0 ID=Physo136814;Parent=Physo136814;rank=4 scaffold_48 ensembl protein_coding_gene 319531 321360 . + . ID=Physo157507;biotype=protein_coding;external_name=C_scaffold_48000028;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 319531 321360 . + . ID=Physo157507;Parent=Physo157507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 319531 320041 . + 0 ID=Physo157507;Parent=Physo157507;rank=1 scaffold_48 . exon 319531 320041 . + . ID=Physo157507.1;Parent=Physo157507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 320128 320315 . + 0 ID=Physo157507;Parent=Physo157507;rank=2 scaffold_48 . exon 320128 320315 . + . ID=Physo157507.2;Parent=Physo157507;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 320390 320594 . + 0 ID=Physo157507;Parent=Physo157507;rank=3 scaffold_48 . exon 320390 320594 . + . ID=Physo157507.3;Parent=Physo157507;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 320648 320710 . + 0 ID=Physo157507;Parent=Physo157507;rank=4 scaffold_48 . exon 320648 320710 . + . ID=Physo157507.4;Parent=Physo157507;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 320791 321070 . + 0 ID=Physo157507;Parent=Physo157507;rank=5 scaffold_48 . exon 320791 321070 . + . ID=Physo157507.5;Parent=Physo157507;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_48 . CDS 321153 321360 . + 0 ID=Physo157507;Parent=Physo157507;rank=6 scaffold_48 . exon 321153 321360 . + . ID=Physo157507.6;Parent=Physo157507;constitutive=1;ensembl_phase=2;rank=6 scaffold_48 ensembl protein_coding_gene 321575 325499 . + . ID=Physo157508;biotype=protein_coding;external_name=C_scaffold_48000029;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 321575 325499 . + . ID=Physo157508;Parent=Physo157508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 321575 321734 . + 0 ID=Physo157508;Parent=Physo157508;rank=1 scaffold_48 . exon 321575 321734 . + . ID=Physo157508.1;Parent=Physo157508;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 321799 322013 . + 0 ID=Physo157508;Parent=Physo157508;rank=2 scaffold_48 . exon 321799 322013 . + . ID=Physo157508.2;Parent=Physo157508;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 322047 322602 . + 0 ID=Physo157508;Parent=Physo157508;rank=3 scaffold_48 . exon 322047 322602 . + . ID=Physo157508.3;Parent=Physo157508;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 322678 323866 . + 0 ID=Physo157508;Parent=Physo157508;rank=4 scaffold_48 . exon 322678 323866 . + . ID=Physo157508.4;Parent=Physo157508;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_48 . CDS 324036 324219 . + 0 ID=Physo157508;Parent=Physo157508;rank=5 scaffold_48 . exon 324036 324219 . + . ID=Physo157508.5;Parent=Physo157508;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 324298 324357 . + 0 ID=Physo157508;Parent=Physo157508;rank=6 scaffold_48 . exon 324298 324357 . + . ID=Physo157508.6;Parent=Physo157508;constitutive=1;rank=6 scaffold_48 . CDS 324427 324771 . + 0 ID=Physo157508;Parent=Physo157508;rank=7 scaffold_48 . exon 324427 324771 . + . ID=Physo157508.7;Parent=Physo157508;constitutive=1;rank=7 scaffold_48 . CDS 324840 325003 . + 0 ID=Physo157508;Parent=Physo157508;rank=8 scaffold_48 . exon 324840 325003 . + . ID=Physo157508.8;Parent=Physo157508;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_48 . CDS 325076 325281 . + 0 ID=Physo157508;Parent=Physo157508;rank=9 scaffold_48 . exon 325076 325281 . + . ID=Physo157508.9;Parent=Physo157508;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_48 . CDS 325366 325499 . + 0 ID=Physo157508;Parent=Physo157508;rank=10 scaffold_48 . exon 325366 325499 . + . ID=Physo157508.10;Parent=Physo157508;constitutive=1;ensembl_phase=1;rank=10 scaffold_48 . repeat_region 330732 330763 . ? . description=dust scaffold_48 . repeat_region 331775 331783 . ? . description=dust scaffold_48 . repeat_region 332740 332747 . ? . description=dust scaffold_48 . repeat_region 333758 333790 . ? . description=dust scaffold_48 . exon 327654 328225 . + . ID=Physo136814.3;Parent=Physo136814;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . exon 328300 329157 . + . ID=Physo136814.4;Parent=Physo136814;constitutive=1;rank=4 scaffold_48 ensembl protein_coding_gene 330035 331606 . - . ID=Physo136815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480094;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 330035 331606 . - . ID=Physo136815;Parent=Physo136815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 330035 330580 . - 0 ID=Physo136815;Parent=Physo136815;rank=4 scaffold_48 . exon 330035 330580 . - . ID=Physo136815.4;Parent=Physo136815;constitutive=1;rank=4 scaffold_48 . CDS 330609 330726 . - 0 ID=Physo136815;Parent=Physo136815;rank=3 scaffold_48 . exon 330609 330726 . - . ID=Physo136815.3;Parent=Physo136815;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 330775 330844 . - 0 ID=Physo136815;Parent=Physo136815;rank=2 scaffold_48 . exon 330775 330844 . - . ID=Physo136815.2;Parent=Physo136815;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_48 . CDS 330922 331606 . - 0 ID=Physo136815;Parent=Physo136815;rank=1 scaffold_48 . exon 330922 331606 . - . ID=Physo136815.1;Parent=Physo136815;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 332119 332569 . - . ID=Physo136816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480095;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 332119 332569 . - . ID=Physo136816;Parent=Physo136816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 332119 332365 . - 0 ID=Physo136816;Parent=Physo136816;rank=2 scaffold_48 . exon 332119 332365 . - . ID=Physo136816.2;Parent=Physo136816;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 332478 332569 . - 0 ID=Physo136816;Parent=Physo136816;rank=1 scaffold_48 . exon 332478 332569 . - . ID=Physo136816.1;Parent=Physo136816;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 332916 334487 . + . ID=Physo136817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480096;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 332916 334487 . + . ID=Physo136817;Parent=Physo136817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 332916 333600 . + 0 ID=Physo136817;Parent=Physo136817;rank=1 scaffold_48 . exon 332916 333600 . + . ID=Physo136817.1;Parent=Physo136817;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 333678 333747 . + 0 ID=Physo136817;Parent=Physo136817;rank=2 scaffold_48 . exon 333678 333747 . + . ID=Physo136817.2;Parent=Physo136817;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_48 . CDS 333796 333913 . + 0 ID=Physo136817;Parent=Physo136817;rank=3 scaffold_48 . exon 333796 333913 . + . ID=Physo136817.3;Parent=Physo136817;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 333942 334487 . + 0 ID=Physo136817;Parent=Physo136817;rank=4 scaffold_48 . exon 333942 334487 . + . ID=Physo136817.4;Parent=Physo136817;constitutive=1;rank=4 scaffold_48 . repeat_region 339450 339483 . ? . description=trf scaffold_48 . biological_region 340879 340879 0.999 + . logic_name=eponine scaffold_48 . repeat_region 340897 340951 . ? . description=trf scaffold_48 . biological_region 340922 340925 0.999 + . logic_name=eponine scaffold_48 . biological_region 340935 340939 0.999 - . logic_name=eponine scaffold_48 . biological_region 340995 341000 0.999 - . logic_name=eponine scaffold_48 . biological_region 341040 341044 0.999 - . logic_name=eponine scaffold_48 . biological_region 341048 341053 0.999 - . logic_name=eponine scaffold_48 . biological_region 341156 341161 0.999 - . logic_name=eponine scaffold_48 . biological_region 341364 341366 0.999 + . logic_name=eponine scaffold_48 . repeat_region 341956 341999 . ? . description=trf scaffold_48 . biological_region 342007 342012 0.999 + . logic_name=eponine scaffold_48 . biological_region 342759 342766 0.999 - . logic_name=eponine scaffold_48 . biological_region 342816 342819 0.999 + . logic_name=eponine scaffold_48 . biological_region 342970 342973 0.999 + . logic_name=eponine scaffold_48 . biological_region 343258 343262 0.999 + . logic_name=eponine scaffold_48 . biological_region 343409 343410 0.999 + . logic_name=eponine scaffold_48 . biological_region 343682 343684 0.999 - . logic_name=eponine scaffold_48 . biological_region 344609 344613 0.999 - . logic_name=eponine scaffold_48 . biological_region 344633 344634 0.999 - . logic_name=eponine scaffold_48 . biological_region 344688 344693 0.999 + . logic_name=eponine scaffold_48 . biological_region 344906 344906 0.999 + . logic_name=eponine scaffold_48 . repeat_region 344960 344991 . ? . description=trf scaffold_48 . biological_region 345031 345033 0.999 - . logic_name=eponine scaffold_48 . biological_region 345059 345059 0.999 - . logic_name=eponine scaffold_48 . biological_region 345060 345076 0.999 + . logic_name=eponine scaffold_48 . biological_region 345087 345090 0.999 + . logic_name=eponine scaffold_48 . biological_region 345113 345117 0.999 + . logic_name=eponine scaffold_48 . repeat_region 345115 345167 . ? . description=trf scaffold_48 . biological_region 345129 345143 0.999 + . logic_name=eponine scaffold_48 . biological_region 345161 345166 0.999 - . logic_name=eponine scaffold_48 . biological_region 345221 345231 0.999 - . logic_name=eponine scaffold_48 . biological_region 345263 345266 0.999 + . logic_name=eponine scaffold_48 . biological_region 345287 345289 0.999 - . logic_name=eponine scaffold_48 . biological_region 345392 345393 0.999 - . logic_name=eponine scaffold_48 . biological_region 346138 346139 0.999 + . logic_name=eponine scaffold_48 . biological_region 346480 346482 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 337302 337568 . + . ID=Physo118019;biotype=protein_coding;external_name=estExt_Genewise1.C_480015;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 337302 337568 . + . ID=Physo118019;Parent=Physo118019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 337302 337568 . + . ID=Physo118019.1;Parent=Physo118019;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 337311 337568 . + 0 ID=Physo118019;Parent=Physo118019;rank=1 scaffold_48 ensembl protein_coding_gene 340162 343801 . + . ID=Physo136818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480097;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 340162 343801 . + . ID=Physo136818;Parent=Physo136818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 340162 341173 . + 0 ID=Physo136818;Parent=Physo136818;rank=1 scaffold_48 . exon 340162 341173 . + . ID=Physo136818.1;Parent=Physo136818;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 341226 343391 . + 0 ID=Physo136818;Parent=Physo136818;rank=2 scaffold_48 . exon 341226 343391 . + . ID=Physo136818.2;Parent=Physo136818;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 343542 343801 . + 0 ID=Physo136818;Parent=Physo136818;rank=3 scaffold_48 . exon 343542 343801 . + . ID=Physo136818.3;Parent=Physo136818;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 ensembl protein_coding_gene 344044 346601 . - . ID=Physo136819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480098;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 344044 346601 . - . ID=Physo136819;Parent=Physo136819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 344044 344661 . - 0 ID=Physo136819;Parent=Physo136819;rank=3 scaffold_48 . exon 344044 344661 . - . ID=Physo136819.3;Parent=Physo136819;constitutive=1;rank=3 scaffold_48 . CDS 345091 345254 . - 0 ID=Physo136819;Parent=Physo136819;rank=2 scaffold_48 . exon 345091 345254 . - . ID=Physo136819.2;Parent=Physo136819;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 345281 346601 . - 0 ID=Physo136819;Parent=Physo136819;rank=1 scaffold_48 . exon 345281 346601 . - . ID=Physo136819.1;Parent=Physo136819;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . repeat_region 348463 348512 . ? . description=dust scaffold_48 . repeat_region 348712 348884 . + . description=GypsyPi-1c_LTR scaffold_48 . repeat_region 348885 349506 . + . description=GypsyPi-1c_I-int scaffold_48 . repeat_region 349507 349556 . ? . description=dust scaffold_48 . repeat_region 350552 350601 . ? . description=dust scaffold_48 . repeat_region 350602 352580 . + . description=GypsyPi-1c_I-int scaffold_48 . repeat_region 352583 353182 . + . description=GypsyPi-1c_I-int scaffold_48 . repeat_region 353153 353511 . + . description=GypsyPi-1c_I-int scaffold_48 . repeat_region 353514 355296 . + . description=GypsyPi-1c_I-int scaffold_48 . repeat_region 355894 356280 . + . description=GypsyPi-1c_I-int scaffold_48 . repeat_region 356849 357171 . + . description=GypsyPi-1c_I-int scaffold_48 ensembl protein_coding_gene 350302 350553 . - . ID=Physo118023;biotype=protein_coding;external_name=estExt_Genewise1.C_480019;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 350302 350553 . - . ID=Physo118023;Parent=Physo118023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 350302 350538 . - 0 ID=Physo118023;Parent=Physo118023;rank=1 scaffold_48 . exon 350302 350553 . - . ID=Physo118023.1;Parent=Physo118023;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 349065 350050 . - . ID=Physo136820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480099;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 349065 350050 . - . ID=Physo136820;Parent=Physo136820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 349065 349344 . - 0 ID=Physo136820;Parent=Physo136820;rank=2 scaffold_48 . exon 349065 349344 . - . ID=Physo136820.2;Parent=Physo136820;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 349571 350007 . - 0 ID=Physo136820;Parent=Physo136820;rank=1 scaffold_48 . exon 349571 350050 . - . ID=Physo136820.1;Parent=Physo136820;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 350754 354673 . + . ID=Physo136822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480101;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 350754 354673 . + . ID=Physo136822;Parent=Physo136822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 350754 351079 . + 0 ID=Physo136822;Parent=Physo136822;rank=1 scaffold_48 . exon 350754 351079 . + . ID=Physo136822.1;Parent=Physo136822;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 351253 351367 . + 0 ID=Physo136822;Parent=Physo136822;rank=2 scaffold_48 . exon 351253 351367 . + . ID=Physo136822.2;Parent=Physo136822;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 351431 351748 . + 0 ID=Physo136822;Parent=Physo136822;rank=3 scaffold_48 . exon 351431 351748 . + . ID=Physo136822.3;Parent=Physo136822;constitutive=1;rank=3 scaffold_48 . CDS 351952 351998 . + 0 ID=Physo136822;Parent=Physo136822;rank=4 scaffold_48 . exon 351952 351998 . + . ID=Physo136822.4;Parent=Physo136822;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 352022 352089 . + 0 ID=Physo136822;Parent=Physo136822;rank=5 scaffold_48 . exon 352022 352089 . + . ID=Physo136822.5;Parent=Physo136822;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 352210 352577 . + 0 ID=Physo136822;Parent=Physo136822;rank=6 scaffold_48 . exon 352210 352577 . + . ID=Physo136822.6;Parent=Physo136822;constitutive=1;ensembl_phase=1;rank=6 scaffold_48 . CDS 352603 353027 . + 0 ID=Physo136822;Parent=Physo136822;rank=7 scaffold_48 . exon 352603 353027 . + . ID=Physo136822.7;Parent=Physo136822;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_48 . CDS 353050 353542 . + 0 ID=Physo136822;Parent=Physo136822;rank=8 scaffold_48 . exon 353050 353542 . + . ID=Physo136822.8;Parent=Physo136822;constitutive=1;ensembl_phase=2;rank=8 scaffold_48 . CDS 353601 354297 . + 0 ID=Physo136822;Parent=Physo136822;rank=9 scaffold_48 . exon 353601 354297 . + . ID=Physo136822.9;Parent=Physo136822;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_48 . CDS 354318 354673 . + 0 ID=Physo136822;Parent=Physo136822;rank=10 scaffold_48 . exon 354318 354673 . + . ID=Physo136822.10;Parent=Physo136822;constitutive=1;ensembl_phase=1;rank=10 scaffold_48 ensembl protein_coding_gene 355543 356985 . - . ID=Physo136823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480102;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 355543 356985 . - . ID=Physo136823;Parent=Physo136823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 355543 356985 . - 0 ID=Physo136823;Parent=Physo136823;rank=1 scaffold_48 . exon 355543 356985 . - . ID=Physo136823.1;Parent=Physo136823;constitutive=1;rank=1 scaffold_48 . biological_region 356926 356929 0.999 - . logic_name=eponine scaffold_48 . biological_region 357888 357892 0.999 + . logic_name=eponine scaffold_48 . biological_region 360971 360972 0.999 + . logic_name=eponine scaffold_48 . biological_region 360988 360990 0.999 + . logic_name=eponine scaffold_48 . biological_region 361188 361191 0.999 + . logic_name=eponine scaffold_48 . biological_region 361347 361348 0.999 + . logic_name=eponine scaffold_48 . repeat_region 361847 361900 . ? . description=trf scaffold_48 . biological_region 362201 362209 0.999 + . logic_name=eponine scaffold_48 . biological_region 362262 362267 0.999 - . logic_name=eponine scaffold_48 . biological_region 362320 362321 0.999 + . logic_name=eponine scaffold_48 . biological_region 363261 363264 0.999 - . logic_name=eponine scaffold_48 . biological_region 363314 363319 0.999 + . logic_name=eponine scaffold_48 . biological_region 363316 363316 0.999 - . logic_name=eponine scaffold_48 . biological_region 363346 363349 0.999 - . logic_name=eponine scaffold_48 . biological_region 363354 363358 0.999 - . logic_name=eponine scaffold_48 . biological_region 363492 363496 0.999 + . logic_name=eponine scaffold_48 ensembl protein_coding_gene 359382 359846 . - . ID=Physo136824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480103;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 359382 359846 . - . ID=Physo136824;Parent=Physo136824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 359382 359846 . - 0 ID=Physo136824;Parent=Physo136824;rank=1 scaffold_48 . exon 359382 359846 . - . ID=Physo136824.1;Parent=Physo136824;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 360114 360566 . - . ID=Physo136825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480104;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 360114 360566 . - . ID=Physo136825;Parent=Physo136825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 360114 360566 . - 0 ID=Physo136825;Parent=Physo136825;rank=1 scaffold_48 . exon 360114 360566 . - . ID=Physo136825.1;Parent=Physo136825;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 362972 365422 . + . ID=Physo136826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480105;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 362972 365422 . + . ID=Physo136826;Parent=Physo136826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 362972 365422 . + 0 ID=Physo136826;Parent=Physo136826;rank=1 scaffold_48 . exon 362972 365422 . + . ID=Physo136826.1;Parent=Physo136826;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 365745 366770 . + . ID=Physo136827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480106;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 365745 366770 . + . ID=Physo136827;Parent=Physo136827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 365745 366770 . + 0 ID=Physo136827;Parent=Physo136827;rank=1 scaffold_48 . exon 365745 366770 . + . ID=Physo136827.1;Parent=Physo136827;constitutive=1;rank=1 scaffold_48 . repeat_region 375420 375432 . ? . description=dust scaffold_48 ensembl protein_coding_gene 366896 368249 . - . ID=Physo136828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480107;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 366896 368249 . - . ID=Physo136828;Parent=Physo136828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 366896 367273 . - 0 ID=Physo136828;Parent=Physo136828;rank=3 scaffold_48 . exon 366896 367273 . - . ID=Physo136828.3;Parent=Physo136828;constitutive=1;rank=3 scaffold_48 . CDS 367354 367509 . - 0 ID=Physo136828;Parent=Physo136828;rank=2 scaffold_48 . exon 367354 367509 . - . ID=Physo136828.2;Parent=Physo136828;constitutive=1;rank=2 scaffold_48 . CDS 367575 368249 . - 0 ID=Physo136828;Parent=Physo136828;rank=1 scaffold_48 . exon 367575 368249 . - . ID=Physo136828.1;Parent=Physo136828;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 369597 373790 . + . ID=Physo136829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480108;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 369597 373790 . + . ID=Physo136829;Parent=Physo136829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 369597 369826 . + 0 ID=Physo136829;Parent=Physo136829;rank=1 scaffold_48 . exon 369597 369826 . + . ID=Physo136829.1;Parent=Physo136829;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 370181 370445 . + 0 ID=Physo136829;Parent=Physo136829;rank=2 scaffold_48 . exon 370181 370445 . + . ID=Physo136829.2;Parent=Physo136829;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 370688 370743 . + 0 ID=Physo136829;Parent=Physo136829;rank=3 scaffold_48 . exon 370688 370743 . + . ID=Physo136829.3;Parent=Physo136829;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_48 . CDS 370793 371448 . + 0 ID=Physo136829;Parent=Physo136829;rank=4 scaffold_48 . exon 370793 371448 . + . ID=Physo136829.4;Parent=Physo136829;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_48 . CDS 371638 373790 . + 0 ID=Physo136829;Parent=Physo136829;rank=5 scaffold_48 . exon 371638 373790 . + . ID=Physo136829.5;Parent=Physo136829;constitutive=1;ensembl_phase=1;rank=5 scaffold_48 ensembl protein_coding_gene 374005 375633 . + . ID=Physo136830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480109;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 374005 375633 . + . ID=Physo136830;Parent=Physo136830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 374005 374217 . + 0 ID=Physo136830;Parent=Physo136830;rank=1 scaffold_48 . exon 374005 374217 . + . ID=Physo136830.1;Parent=Physo136830;constitutive=1;rank=1 scaffold_48 . CDS 374313 374852 . + 0 ID=Physo136830;Parent=Physo136830;rank=2 scaffold_48 . exon 374313 374852 . + . ID=Physo136830.2;Parent=Physo136830;constitutive=1;rank=2 scaffold_48 . CDS 374922 375153 . + 0 ID=Physo136830;Parent=Physo136830;rank=3 scaffold_48 . exon 374922 375153 . + . ID=Physo136830.3;Parent=Physo136830;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_48 . CDS 375227 375375 . + 0 ID=Physo136830;Parent=Physo136830;rank=4 scaffold_48 . exon 375227 375375 . + . ID=Physo136830.4;Parent=Physo136830;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 375457 375633 . + 0 ID=Physo136830;Parent=Physo136830;rank=5 scaffold_48 . exon 375457 375633 . + . ID=Physo136830.5;Parent=Physo136830;constitutive=1;rank=5 scaffold_48 ensembl protein_coding_gene 375836 377017 . - . ID=Physo136831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480110;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 375836 377017 . - . ID=Physo136831;Parent=Physo136831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 375836 377017 . - 0 ID=Physo136831;Parent=Physo136831;rank=1 scaffold_48 . exon 375836 377017 . - . ID=Physo136831.1;Parent=Physo136831;constitutive=1;rank=1 scaffold_48 . biological_region 378570 378573 0.999 - . logic_name=eponine scaffold_48 . biological_region 379040 379044 0.999 + . logic_name=eponine scaffold_48 . biological_region 379509 379511 0.999 - . logic_name=eponine scaffold_48 . biological_region 381095 381098 0.999 + . logic_name=eponine scaffold_48 . repeat_region 381375 381400 . ? . description=trf scaffold_48 . repeat_region 383567 383596 . ? . description=trf scaffold_48 . biological_region 384122 384125 0.999 + . logic_name=eponine scaffold_48 . biological_region 386051 386057 0.999 + . logic_name=eponine scaffold_48 . biological_region 386457 386458 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 377128 379650 . - . ID=Physo136832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480111;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 377128 379650 . - . ID=Physo136832;Parent=Physo136832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 377128 379650 . - . ID=Physo136832.1;Parent=Physo136832;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_48 . CDS 377194 379650 . - 0 ID=Physo136832;Parent=Physo136832;rank=1 scaffold_48 ensembl protein_coding_gene 383254 387064 . - . ID=Physo136833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480112;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 383254 387064 . - . ID=Physo136833;Parent=Physo136833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 383254 383364 . - 0 ID=Physo136833;Parent=Physo136833;rank=12 scaffold_48 . exon 383254 383364 . - . ID=Physo136833.12;Parent=Physo136833;constitutive=1;rank=12 scaffold_48 . CDS 383456 383560 . - 0 ID=Physo136833;Parent=Physo136833;rank=11 scaffold_48 . exon 383456 383560 . - . ID=Physo136833.11;Parent=Physo136833;constitutive=1;rank=11 scaffold_48 . CDS 383678 383770 . - 0 ID=Physo136833;Parent=Physo136833;rank=10 scaffold_48 . exon 383678 383770 . - . ID=Physo136833.10;Parent=Physo136833;constitutive=1;rank=10 scaffold_48 . CDS 383841 384001 . - 0 ID=Physo136833;Parent=Physo136833;rank=9 scaffold_48 . exon 383841 384001 . - . ID=Physo136833.9;Parent=Physo136833;constitutive=1;ensembl_phase=1;rank=9 scaffold_48 . CDS 384067 384677 . - 0 ID=Physo136833;Parent=Physo136833;rank=8 scaffold_48 . exon 384067 384677 . - . ID=Physo136833.8;Parent=Physo136833;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_48 . CDS 384751 384924 . - 0 ID=Physo136833;Parent=Physo136833;rank=7 scaffold_48 . exon 384751 384924 . - . ID=Physo136833.7;Parent=Physo136833;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_48 . CDS 384992 385187 . - 0 ID=Physo136833;Parent=Physo136833;rank=6 scaffold_48 . exon 384992 385187 . - . ID=Physo136833.6;Parent=Physo136833;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_48 . CDS 385271 385336 . - 0 ID=Physo136833;Parent=Physo136833;rank=5 scaffold_48 . exon 385271 385336 . - . ID=Physo136833.5;Parent=Physo136833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_48 . CDS 385414 385654 . - 0 ID=Physo136833;Parent=Physo136833;rank=4 scaffold_48 . exon 385414 385654 . - . ID=Physo136833.4;Parent=Physo136833;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_48 . CDS 386023 386613 . - 0 ID=Physo136833;Parent=Physo136833;rank=3 scaffold_48 . exon 386023 386613 . - . ID=Physo136833.3;Parent=Physo136833;constitutive=1;rank=3 scaffold_48 . CDS 386699 386885 . - 0 ID=Physo136833;Parent=Physo136833;rank=2 scaffold_48 . CDS 386959 387050 . - 0 ID=Physo136833;Parent=Physo136833;rank=1 scaffold_48 . repeat_region 388432 388491 . ? . description=dust scaffold_48 . repeat_region 393324 393378 . ? . description=dust scaffold_48 ensembl protein_coding_gene 393761 396308 . + . ID=Physo108980;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_480009;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 393761 396308 . + . ID=Physo108980;Parent=Physo108980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 393761 394933 . + . ID=Physo108980.1;Parent=Physo108980;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 393808 394933 . + 0 ID=Physo108980;Parent=Physo108980;rank=1 scaffold_48 . CDS 395014 395240 . + 0 ID=Physo108980;Parent=Physo108980;rank=2 scaffold_48 . exon 395014 395240 . + . ID=Physo108980.2;Parent=Physo108980;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 395313 395411 . + 0 ID=Physo108980;Parent=Physo108980;rank=3 scaffold_48 . exon 395313 395411 . + . ID=Physo108980.3;Parent=Physo108980;constitutive=1;rank=3 scaffold_48 . CDS 395482 395625 . + 0 ID=Physo108980;Parent=Physo108980;rank=4 scaffold_48 . exon 395482 395625 . + . ID=Physo108980.4;Parent=Physo108980;constitutive=1;rank=4 scaffold_48 . CDS 395696 396073 . + 0 ID=Physo108980;Parent=Physo108980;rank=5 scaffold_48 . exon 395696 396073 . + . ID=Physo108980.5;Parent=Physo108980;constitutive=1;rank=5 scaffold_48 . CDS 396145 396225 . + 0 ID=Physo108980;Parent=Physo108980;rank=6 scaffold_48 . exon 396145 396225 . + . ID=Physo108980.6;Parent=Physo108980;constitutive=1;rank=6 scaffold_48 . CDS 396261 396308 . + 0 ID=Physo108980;Parent=Physo108980;rank=7 scaffold_48 . exon 396261 396308 . + . ID=Physo108980.7;Parent=Physo108980;constitutive=1;rank=7 scaffold_48 . exon 386699 386885 . - . ID=Physo136833.2;Parent=Physo136833;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . exon 386959 387064 . - . ID=Physo136833.1;Parent=Physo136833;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 388420 392198 . + . ID=Physo136834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480113;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 388420 392198 . + . ID=Physo136834;Parent=Physo136834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 388420 389043 . + 0 ID=Physo136834;Parent=Physo136834;rank=1 scaffold_48 . exon 388420 389043 . + . ID=Physo136834.1;Parent=Physo136834;constitutive=1;rank=1 scaffold_48 . CDS 389194 389543 . + 0 ID=Physo136834;Parent=Physo136834;rank=2 scaffold_48 . exon 389194 389543 . + . ID=Physo136834.2;Parent=Physo136834;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 389642 391376 . + 0 ID=Physo136834;Parent=Physo136834;rank=3 scaffold_48 . exon 389642 391376 . + . ID=Physo136834.3;Parent=Physo136834;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 391447 391767 . + 0 ID=Physo136834;Parent=Physo136834;rank=4 scaffold_48 . exon 391447 391767 . + . ID=Physo136834.4;Parent=Physo136834;constitutive=1;rank=4 scaffold_48 . CDS 391841 391957 . + 0 ID=Physo136834;Parent=Physo136834;rank=5 scaffold_48 . exon 391841 391957 . + . ID=Physo136834.5;Parent=Physo136834;constitutive=1;rank=5 scaffold_48 . CDS 392031 392198 . + 0 ID=Physo136834;Parent=Physo136834;rank=6 scaffold_48 . exon 392031 392198 . + . ID=Physo136834.6;Parent=Physo136834;constitutive=1;rank=6 scaffold_48 . biological_region 398761 398762 0.999 + . logic_name=eponine scaffold_48 . biological_region 402565 402567 0.999 - . logic_name=eponine scaffold_48 . biological_region 403561 403564 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 405671 406668 . + . ID=Physo108981;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_480010;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 405671 406668 . + . ID=Physo108981;Parent=Physo108981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 405671 405699 . + 0 ID=Physo108981;Parent=Physo108981;rank=1 scaffold_48 . exon 405671 405699 . + . ID=Physo108981.1;Parent=Physo108981;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 405826 405973 . + 0 ID=Physo108981;Parent=Physo108981;rank=2 scaffold_48 . exon 405826 405973 . + . ID=Physo108981.2;Parent=Physo108981;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 406059 406586 . + 0 ID=Physo108981;Parent=Physo108981;rank=3 scaffold_48 . exon 406059 406668 . + . ID=Physo108981.3;Parent=Physo108981;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_48 ensembl protein_coding_gene 399613 401311 . - . ID=Physo136838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480117;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 399613 401311 . - . ID=Physo136838;Parent=Physo136838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 399613 400715 . - 0 ID=Physo136838;Parent=Physo136838;rank=4 scaffold_48 . exon 399613 400715 . - . ID=Physo136838.4;Parent=Physo136838;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 400783 400908 . - 0 ID=Physo136838;Parent=Physo136838;rank=3 scaffold_48 . exon 400783 400908 . - . ID=Physo136838.3;Parent=Physo136838;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 400985 401173 . - 0 ID=Physo136838;Parent=Physo136838;rank=2 scaffold_48 . exon 400985 401173 . - . ID=Physo136838.2;Parent=Physo136838;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 401254 401311 . - 0 ID=Physo136838;Parent=Physo136838;rank=1 scaffold_48 . exon 401254 401311 . - . ID=Physo136838.1;Parent=Physo136838;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 401457 402786 . + . ID=Physo136839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480118;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 401457 402786 . + . ID=Physo136839;Parent=Physo136839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 401457 401792 . + 0 ID=Physo136839;Parent=Physo136839;rank=1 scaffold_48 . exon 401457 401792 . + . ID=Physo136839.1;Parent=Physo136839;constitutive=1;rank=1 scaffold_48 . CDS 401877 401987 . + 0 ID=Physo136839;Parent=Physo136839;rank=2 scaffold_48 . exon 401877 401987 . + . ID=Physo136839.2;Parent=Physo136839;constitutive=1;rank=2 scaffold_48 . CDS 402071 402645 . + 0 ID=Physo136839;Parent=Physo136839;rank=3 scaffold_48 . exon 402071 402645 . + . ID=Physo136839.3;Parent=Physo136839;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_48 . CDS 402714 402786 . + 0 ID=Physo136839;Parent=Physo136839;rank=4 scaffold_48 . exon 402714 402786 . + . ID=Physo136839.4;Parent=Physo136839;constitutive=1;ensembl_phase=2;rank=4 scaffold_48 ensembl protein_coding_gene 404254 404574 . - . ID=Physo136840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480119;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 404254 404574 . - . ID=Physo136840;Parent=Physo136840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 404254 404574 . - 0 ID=Physo136840;Parent=Physo136840;rank=1 scaffold_48 . exon 404254 404574 . - . ID=Physo136840.1;Parent=Physo136840;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 397750 398654 . - . ID=Physo157513;biotype=protein_coding;external_name=C_scaffold_48000034;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 397750 398654 . - . ID=Physo157513;Parent=Physo157513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 397750 397865 . - 0 ID=Physo157513;Parent=Physo157513;rank=3 scaffold_48 . exon 397750 397865 . - . ID=Physo157513.3;Parent=Physo157513;constitutive=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 397949 398471 . - 0 ID=Physo157513;Parent=Physo157513;rank=2 scaffold_48 . exon 397949 398471 . - . ID=Physo157513.2;Parent=Physo157513;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_48 . CDS 398565 398654 . - 0 ID=Physo157513;Parent=Physo157513;rank=1 scaffold_48 . exon 398565 398654 . - . ID=Physo157513.1;Parent=Physo157513;constitutive=1;rank=1 scaffold_48 . repeat_region 410171 410183 . ? . description=dust scaffold_48 . repeat_region 411575 411658 . ? . description=trf scaffold_48 . repeat_region 415964 415979 . ? . description=dust scaffold_48 ensembl protein_coding_gene 406727 408604 . - . ID=Physo136842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480121;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 406727 408604 . - . ID=Physo136842;Parent=Physo136842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 406727 407020 . - 0 ID=Physo136842;Parent=Physo136842;rank=3 scaffold_48 . exon 406727 407020 . - . ID=Physo136842.3;Parent=Physo136842;constitutive=1;rank=3 scaffold_48 . CDS 407294 407593 . - 0 ID=Physo136842;Parent=Physo136842;rank=2 scaffold_48 . exon 407294 407593 . - . ID=Physo136842.2;Parent=Physo136842;constitutive=1;rank=2 scaffold_48 . CDS 407633 408604 . - 0 ID=Physo136842;Parent=Physo136842;rank=1 scaffold_48 . exon 407633 408604 . - . ID=Physo136842.1;Parent=Physo136842;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 416080 417375 . + . ID=Physo136843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480122;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 416080 417375 . + . ID=Physo136843;Parent=Physo136843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 416080 417375 . + 0 ID=Physo136843;Parent=Physo136843;rank=1 scaffold_48 . exon 416080 417375 . + . ID=Physo136843.1;Parent=Physo136843;constitutive=1;rank=1 scaffold_48 . biological_region 416343 416347 0.999 + . logic_name=eponine scaffold_48 . biological_region 416364 416364 0.999 + . logic_name=eponine scaffold_48 . biological_region 416459 416465 0.999 - . logic_name=eponine scaffold_48 . biological_region 417017 417019 0.999 + . logic_name=eponine scaffold_48 . repeat_region 417313 417589 . - . description=GypsyPi-1c_I-int scaffold_48 . repeat_region 417810 420192 . - . description=GypsyPi-1c_I-int scaffold_48 . biological_region 418673 418676 0.999 + . logic_name=eponine scaffold_48 . biological_region 419134 419136 0.999 + . logic_name=eponine scaffold_48 . biological_region 420578 420580 0.999 - . logic_name=eponine scaffold_48 . biological_region 420743 420745 0.999 + . logic_name=eponine scaffold_48 . biological_region 420769 420772 0.999 - . logic_name=eponine scaffold_48 . biological_region 421198 421201 0.999 - . logic_name=eponine scaffold_48 . biological_region 421240 421241 0.999 + . logic_name=eponine scaffold_48 . biological_region 421408 421410 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 424506 425034 . + . ID=Physo118035;biotype=protein_coding;external_name=estExt_Genewise1.C_480031;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 424506 425034 . + . ID=Physo118035;Parent=Physo118035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 424506 425034 . + . ID=Physo118035.1;Parent=Physo118035;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 424509 425027 . + 0 ID=Physo118035;Parent=Physo118035;rank=1 scaffold_48 ensembl protein_coding_gene 417925 421367 . - . ID=Physo136844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480123;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 417925 421367 . - . ID=Physo136844;Parent=Physo136844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 417925 418196 . - 0 ID=Physo136844;Parent=Physo136844;rank=2 scaffold_48 . exon 417925 418196 . - . ID=Physo136844.2;Parent=Physo136844;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 418466 421367 . - 0 ID=Physo136844;Parent=Physo136844;rank=1 scaffold_48 . exon 418466 421367 . - . ID=Physo136844.1;Parent=Physo136844;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 421793 422593 . - . ID=Physo136845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480124;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 421793 422593 . - . ID=Physo136845;Parent=Physo136845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 421793 422593 . - 0 ID=Physo136845;Parent=Physo136845;rank=1 scaffold_48 . exon 421793 422593 . - . ID=Physo136845.1;Parent=Physo136845;constitutive=1;rank=1 scaffold_48 . repeat_region 426816 426830 . ? . description=dust scaffold_48 . repeat_region 426839 426901 . ? . description=trf scaffold_48 . repeat_region 427291 427339 . ? . description=trf scaffold_48 . repeat_region 428711 429524 . ? . description=dust scaffold_48 ensembl protein_coding_gene 429851 433200 . - . ID=Physo136847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480126;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 429851 433200 . - . ID=Physo136847;Parent=Physo136847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 429851 431414 . - 0 ID=Physo136847;Parent=Physo136847;rank=5 scaffold_48 . exon 429851 431414 . - . ID=Physo136847.5;Parent=Physo136847;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 431961 432024 . - 0 ID=Physo136847;Parent=Physo136847;rank=4 scaffold_48 . exon 431961 432024 . - . ID=Physo136847.4;Parent=Physo136847;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_48 . CDS 432165 432736 . - 0 ID=Physo136847;Parent=Physo136847;rank=3 scaffold_48 . exon 432165 432736 . - . ID=Physo136847.3;Parent=Physo136847;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 432865 433094 . - 0 ID=Physo136847;Parent=Physo136847;rank=2 scaffold_48 . exon 432865 433094 . - . ID=Physo136847.2;Parent=Physo136847;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 433144 433200 . - 0 ID=Physo136847;Parent=Physo136847;rank=1 scaffold_48 . exon 433144 433200 . - . ID=Physo136847.1;Parent=Physo136847;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 434388 437573 . + . ID=Physo136848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480127;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 434388 437573 . + . ID=Physo136848;Parent=Physo136848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 434388 434758 . + 0 ID=Physo136848;Parent=Physo136848;rank=1 scaffold_48 . exon 434388 434758 . + . ID=Physo136848.1;Parent=Physo136848;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 . CDS 434921 437573 . + 0 ID=Physo136848;Parent=Physo136848;rank=2 scaffold_48 . exon 434921 437573 . + . ID=Physo136848.2;Parent=Physo136848;constitutive=1;ensembl_phase=2;rank=2 scaffold_48 . repeat_region 439569 439654 . + . description=(TCG)n scaffold_48 . biological_region 440043 440046 0.999 - . logic_name=eponine scaffold_48 . biological_region 441624 441626 0.999 + . logic_name=eponine scaffold_48 . biological_region 441711 441716 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 438590 441771 . - . ID=Physo136849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480128;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 438590 441771 . - . ID=Physo136849;Parent=Physo136849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 438590 438914 . - 0 ID=Physo136849;Parent=Physo136849;rank=5 scaffold_48 . exon 438590 438914 . - . ID=Physo136849.5;Parent=Physo136849;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 438939 440188 . - 0 ID=Physo136849;Parent=Physo136849;rank=4 scaffold_48 . exon 438939 440188 . - . ID=Physo136849.4;Parent=Physo136849;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 440331 440717 . - 0 ID=Physo136849;Parent=Physo136849;rank=3 scaffold_48 . exon 440331 440717 . - . ID=Physo136849.3;Parent=Physo136849;constitutive=1;rank=3 scaffold_48 . CDS 440739 440882 . - 0 ID=Physo136849;Parent=Physo136849;rank=2 scaffold_48 . exon 440739 440882 . - . ID=Physo136849.2;Parent=Physo136849;constitutive=1;rank=2 scaffold_48 . CDS 440920 441771 . - 0 ID=Physo136849;Parent=Physo136849;rank=1 scaffold_48 . exon 440920 441771 . - . ID=Physo136849.1;Parent=Physo136849;constitutive=1;rank=1 scaffold_48 ensembl protein_coding_gene 444701 446302 . + . ID=Physo136850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480129;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 444701 446302 . + . ID=Physo136850;Parent=Physo136850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 444701 446302 . + 0 ID=Physo136850;Parent=Physo136850;rank=1 scaffold_48 . exon 444701 446302 . + . ID=Physo136850.1;Parent=Physo136850;constitutive=1;rank=1 scaffold_48 . repeat_region 447604 447664 . ? . description=dust scaffold_48 . repeat_region 453879 453903 . ? . description=trf scaffold_48 . repeat_region 454410 454456 . ? . description=trf scaffold_48 ensembl protein_coding_gene 446564 447317 . - . ID=Physo108982;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_480011;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 446564 447317 . - . ID=Physo108982;Parent=Physo108982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 446564 447268 . - 0 ID=Physo108982;Parent=Physo108982;rank=1 scaffold_48 . exon 446564 447317 . - . ID=Physo108982.1;Parent=Physo108982;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 447555 449055 . + . ID=Physo136852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480131;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 447555 449055 . + . ID=Physo136852;Parent=Physo136852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 447555 449055 . + . ID=Physo136852.1;Parent=Physo136852;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 447566 448678 . + 0 ID=Physo136852;Parent=Physo136852;rank=1 scaffold_48 ensembl protein_coding_gene 452030 457188 . + . ID=Physo136854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480133;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 452030 457188 . + . ID=Physo136854;Parent=Physo136854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 452030 453803 . + 0 ID=Physo136854;Parent=Physo136854;rank=1 scaffold_48 . exon 452030 453803 . + . ID=Physo136854.1;Parent=Physo136854;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . CDS 453935 455190 . + 0 ID=Physo136854;Parent=Physo136854;rank=2 scaffold_48 . exon 453935 455190 . + . ID=Physo136854.2;Parent=Physo136854;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 455635 455763 . + 0 ID=Physo136854;Parent=Physo136854;rank=3 scaffold_48 . exon 455635 455763 . + . ID=Physo136854.3;Parent=Physo136854;constitutive=1;rank=3 scaffold_48 . CDS 455846 456286 . + 0 ID=Physo136854;Parent=Physo136854;rank=4 scaffold_48 . exon 455846 456286 . + . ID=Physo136854.4;Parent=Physo136854;constitutive=1;rank=4 scaffold_48 . CDS 456426 456450 . + 0 ID=Physo136854;Parent=Physo136854;rank=5 scaffold_48 . CDS 456663 456820 . + 0 ID=Physo136854;Parent=Physo136854;rank=6 scaffold_48 . CDS 456892 457188 . + 0 ID=Physo136854;Parent=Physo136854;rank=7 scaffold_48 ensembl protein_coding_gene 449148 451876 . - . ID=Physo157517;biotype=protein_coding;external_name=C_scaffold_48000038;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 449148 451876 . - . ID=Physo157517;Parent=Physo157517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 449148 449456 . - 0 ID=Physo157517;Parent=Physo157517;rank=6 scaffold_48 . exon 449148 449456 . - . ID=Physo157517.6;Parent=Physo157517;constitutive=1;rank=6 scaffold_48 . CDS 449493 450168 . - 0 ID=Physo157517;Parent=Physo157517;rank=5 scaffold_48 . exon 449493 450168 . - . ID=Physo157517.5;Parent=Physo157517;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 450190 450801 . - 0 ID=Physo157517;Parent=Physo157517;rank=4 scaffold_48 . exon 450190 450801 . - . ID=Physo157517.4;Parent=Physo157517;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_48 . CDS 450847 451257 . - 0 ID=Physo157517;Parent=Physo157517;rank=3 scaffold_48 . exon 450847 451257 . - . ID=Physo157517.3;Parent=Physo157517;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_48 . CDS 451285 451546 . - 0 ID=Physo157517;Parent=Physo157517;rank=2 scaffold_48 . exon 451285 451546 . - . ID=Physo157517.2;Parent=Physo157517;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_48 . CDS 451795 451876 . - 0 ID=Physo157517;Parent=Physo157517;rank=1 scaffold_48 . exon 451795 451876 . - . ID=Physo157517.1;Parent=Physo157517;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . exon 456426 456450 . + . ID=Physo136854.5;Parent=Physo136854;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_48 . exon 456663 456820 . + . ID=Physo136854.6;Parent=Physo136854;constitutive=1;ensembl_phase=1;rank=6 scaffold_48 . exon 456892 457188 . + . ID=Physo136854.7;Parent=Physo136854;constitutive=1;rank=7 scaffold_48 ensembl protein_coding_gene 463153 464651 . - . ID=Physo136855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480134;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 463153 464651 . - . ID=Physo136855;Parent=Physo136855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 463153 463163 . - 0 ID=Physo136855;Parent=Physo136855;rank=4 scaffold_48 . exon 463153 463163 . - . ID=Physo136855.4;Parent=Physo136855;constitutive=1;ensembl_phase=1;rank=4 scaffold_48 . CDS 463343 464305 . - 0 ID=Physo136855;Parent=Physo136855;rank=3 scaffold_48 . exon 463343 464305 . - . ID=Physo136855.3;Parent=Physo136855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_48 . CDS 464396 464478 . - 0 ID=Physo136855;Parent=Physo136855;rank=2 scaffold_48 . exon 464396 464478 . - . ID=Physo136855.2;Parent=Physo136855;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_48 . CDS 464557 464651 . - 0 ID=Physo136855;Parent=Physo136855;rank=1 scaffold_48 . exon 464557 464651 . - . ID=Physo136855.1;Parent=Physo136855;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_48 ensembl protein_coding_gene 464887 466014 . + . ID=Physo136856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480135;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 464887 466014 . + . ID=Physo136856;Parent=Physo136856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 464887 465092 . + . ID=Physo136856.1;Parent=Physo136856;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 . CDS 464994 465092 . + 0 ID=Physo136856;Parent=Physo136856;rank=1 scaffold_48 . CDS 465201 465322 . + 0 ID=Physo136856;Parent=Physo136856;rank=2 scaffold_48 . exon 465201 465322 . + . ID=Physo136856.2;Parent=Physo136856;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 465436 465610 . + 0 ID=Physo136856;Parent=Physo136856;rank=3 scaffold_48 . exon 465436 465610 . + . ID=Physo136856.3;Parent=Physo136856;constitutive=1;ensembl_phase=2;rank=3 scaffold_48 . CDS 465683 465924 . + 0 ID=Physo136856;Parent=Physo136856;rank=4 scaffold_48 . exon 465683 465924 . + . ID=Physo136856.4;Parent=Physo136856;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 465999 466014 . + 0 ID=Physo136856;Parent=Physo136856;rank=5 scaffold_48 . repeat_region 468338 468387 . ? . description=dust scaffold_48 . repeat_region 468832 468850 . ? . description=dust scaffold_48 . repeat_region 468832 468855 . ? . description=trf scaffold_48 . repeat_region 473470 473498 . ? . description=trf scaffold_48 . repeat_region 473585 473647 . ? . description=dust scaffold_48 . repeat_region 473682 473766 . ? . description=trf scaffold_48 . repeat_region 473713 473776 . ? . description=dust scaffold_48 . biological_region 473753 473756 0.999 + . logic_name=eponine scaffold_48 . biological_region 473984 473992 0.999 - . logic_name=eponine scaffold_48 . biological_region 474012 474013 0.999 + . logic_name=eponine scaffold_48 . biological_region 474099 474100 0.999 - . logic_name=eponine scaffold_48 ensembl protein_coding_gene 473578 475632 . + . ID=Physo108983;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_480012;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 473578 475632 . + . ID=Physo108983;Parent=Physo108983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 473578 473610 . + 0 ID=Physo108983;Parent=Physo108983;rank=1 scaffold_48 . exon 473578 473610 . + . ID=Physo108983.1;Parent=Physo108983;constitutive=1;rank=1 scaffold_48 . CDS 473686 475331 . + 0 ID=Physo108983;Parent=Physo108983;rank=2 scaffold_48 . exon 473686 475331 . + . ID=Physo108983.2;Parent=Physo108983;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_48 . CDS 475501 475534 . + 0 ID=Physo108983;Parent=Physo108983;rank=3 scaffold_48 . exon 475501 475632 . + . ID=Physo108983.3;Parent=Physo108983;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_48 . exon 465999 466014 . + . ID=Physo136856.5;Parent=Physo136856;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 ensembl protein_coding_gene 466207 468000 . - . ID=Physo136857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480136;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 466207 468000 . - . ID=Physo136857;Parent=Physo136857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 466207 466511 . - . ID=Physo136857.8;Parent=Physo136857;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_48 . CDS 466251 466511 . - 0 ID=Physo136857;Parent=Physo136857;rank=8 scaffold_48 . CDS 466585 466669 . - 0 ID=Physo136857;Parent=Physo136857;rank=7 scaffold_48 . exon 466585 466669 . - . ID=Physo136857.7;Parent=Physo136857;constitutive=1;ensembl_phase=2;rank=7 scaffold_48 . CDS 466738 466895 . - 0 ID=Physo136857;Parent=Physo136857;rank=6 scaffold_48 . exon 466738 466895 . - . ID=Physo136857.6;Parent=Physo136857;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_48 . CDS 466965 467013 . - 0 ID=Physo136857;Parent=Physo136857;rank=5 scaffold_48 . exon 466965 467013 . - . ID=Physo136857.5;Parent=Physo136857;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 467094 467173 . - 0 ID=Physo136857;Parent=Physo136857;rank=4 scaffold_48 . exon 467094 467173 . - . ID=Physo136857.4;Parent=Physo136857;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_48 . CDS 467238 467675 . - 0 ID=Physo136857;Parent=Physo136857;rank=3 scaffold_48 . exon 467238 467675 . - . ID=Physo136857.3;Parent=Physo136857;constitutive=1;rank=3 scaffold_48 . CDS 467750 467835 . - 0 ID=Physo136857;Parent=Physo136857;rank=2 scaffold_48 . exon 467750 467835 . - . ID=Physo136857.2;Parent=Physo136857;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 467907 468000 . - 0 ID=Physo136857;Parent=Physo136857;rank=1 scaffold_48 . exon 467907 468000 . - . ID=Physo136857.1;Parent=Physo136857;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 468182 469856 . + . ID=Physo136858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480137;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 468182 469856 . + . ID=Physo136858;Parent=Physo136858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 468182 468307 . + 0 ID=Physo136858;Parent=Physo136858;rank=1 scaffold_48 . exon 468182 468307 . + . ID=Physo136858.1;Parent=Physo136858;constitutive=1;rank=1 scaffold_48 . CDS 468405 468479 . + 0 ID=Physo136858;Parent=Physo136858;rank=2 scaffold_48 . exon 468405 468479 . + . ID=Physo136858.2;Parent=Physo136858;constitutive=1;rank=2 scaffold_48 . CDS 468564 468701 . + 0 ID=Physo136858;Parent=Physo136858;rank=3 scaffold_48 . exon 468564 468701 . + . ID=Physo136858.3;Parent=Physo136858;constitutive=1;rank=3 scaffold_48 . CDS 468823 468858 . + 0 ID=Physo136858;Parent=Physo136858;rank=4 scaffold_48 . exon 468823 468858 . + . ID=Physo136858.4;Parent=Physo136858;constitutive=1;rank=4 scaffold_48 . CDS 468897 469008 . + 0 ID=Physo136858;Parent=Physo136858;rank=5 scaffold_48 . exon 468897 469008 . + . ID=Physo136858.5;Parent=Physo136858;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_48 . CDS 469077 469145 . + 0 ID=Physo136858;Parent=Physo136858;rank=6 scaffold_48 . exon 469077 469145 . + . ID=Physo136858.6;Parent=Physo136858;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_48 . CDS 469220 469282 . + 0 ID=Physo136858;Parent=Physo136858;rank=7 scaffold_48 . exon 469220 469282 . + . ID=Physo136858.7;Parent=Physo136858;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_48 . CDS 469364 469468 . + 0 ID=Physo136858;Parent=Physo136858;rank=8 scaffold_48 . exon 469364 469468 . + . ID=Physo136858.8;Parent=Physo136858;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_48 . CDS 469539 469690 . + 0 ID=Physo136858;Parent=Physo136858;rank=9 scaffold_48 . exon 469539 469794 . + . ID=Physo136858.9;Parent=Physo136858;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=9 scaffold_48 . exon 469852 469856 . + . ID=Physo136858.10;Parent=Physo136858;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=10 scaffold_48 ensembl protein_coding_gene 472027 473239 . - . ID=Physo136859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480138;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 472027 473239 . - . ID=Physo136859;Parent=Physo136859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 472027 472465 . - 0 ID=Physo136859;Parent=Physo136859;rank=5 scaffold_48 . exon 472027 472465 . - . ID=Physo136859.5;Parent=Physo136859;constitutive=1;ensembl_phase=2;rank=5 scaffold_48 . CDS 472538 472699 . - 0 ID=Physo136859;Parent=Physo136859;rank=4 scaffold_48 . exon 472538 472699 . - . ID=Physo136859.4;Parent=Physo136859;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_48 . CDS 472787 472875 . - 0 ID=Physo136859;Parent=Physo136859;rank=3 scaffold_48 . exon 472787 472875 . - . ID=Physo136859.3;Parent=Physo136859;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_48 . CDS 472964 473064 . - 0 ID=Physo136859;Parent=Physo136859;rank=2 scaffold_48 . exon 472964 473064 . - . ID=Physo136859.2;Parent=Physo136859;constitutive=1;ensembl_phase=1;rank=2 scaffold_48 . CDS 473182 473239 . - 0 ID=Physo136859;Parent=Physo136859;rank=1 scaffold_48 . exon 473182 473239 . - . ID=Physo136859.1;Parent=Physo136859;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 ensembl protein_coding_gene 475610 476267 . - . ID=Physo136861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480140;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 475610 476267 . - . ID=Physo136861;Parent=Physo136861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . exon 475610 475824 . - . ID=Physo136861.2;Parent=Physo136861;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_48 . CDS 475735 475824 . - 0 ID=Physo136861;Parent=Physo136861;rank=2 scaffold_48 . CDS 475896 476240 . - 0 ID=Physo136861;Parent=Physo136861;rank=1 scaffold_48 ensembl tRNA_gene 485018 485090 . + . ID=EPrPSOG00000000003;biotype=tRNA;description=tRNA-Asn for anticodon GUU [Source:TRNASCAN_SE%3BAcc:tRNA-Asn];external_name=tRNA-Asn;logic_name=ncrna_eg scaffold_48 ensembl transcript 485018 485090 . + . ID=EPrPSOT00000000003;Parent=EPrPSOG00000000003;biotype=tRNA;logic_name=ncrna_eg scaffold_48 . exon 485018 485090 . + . ID=EPrPSOE00000000003;Parent=EPrPSOT00000000003;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_48 . exon 475896 476267 . - . ID=Physo136861.1;Parent=Physo136861;constitutive=1;ensembl_phase=-1;rank=1 scaffold_48 ensembl protein_coding_gene 478183 478523 . - . ID=Physo136862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_480141;logic_name=jgi_physo1_1 scaffold_48 ensembl transcript 478183 478523 . - . ID=Physo136862;Parent=Physo136862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_48 . CDS 478183 478245 . - 0 ID=Physo136862;Parent=Physo136862;rank=2 scaffold_48 . exon 478183 478245 . - . ID=Physo136862.2;Parent=Physo136862;constitutive=1;rank=2 scaffold_48 . CDS 478278 478523 . - 0 ID=Physo136862;Parent=Physo136862;rank=1 scaffold_48 . exon 478278 478523 . - . ID=Physo136862.1;Parent=Physo136862;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_50 1 493694 scaffold_50 . biological_region 194 194 0.999 - . logic_name=eponine scaffold_50 . biological_region 413 419 0.999 + . logic_name=eponine scaffold_50 . repeat_region 415 451 . ? . description=trf scaffold_50 . biological_region 459 462 0.999 - . logic_name=eponine scaffold_50 . biological_region 482 490 0.999 - . logic_name=eponine scaffold_50 . biological_region 516 521 0.999 - . logic_name=eponine scaffold_50 . biological_region 532 539 0.999 - . logic_name=eponine scaffold_50 . biological_region 1196 1198 0.999 + . logic_name=eponine scaffold_50 . biological_region 1257 1261 0.999 - . logic_name=eponine scaffold_50 . repeat_region 1479 1528 . ? . description=dust scaffold_50 . biological_region 3110 3113 0.999 + . logic_name=eponine scaffold_50 . repeat_region 3241 3405 . ? . description=dust scaffold_50 . biological_region 4339 4340 0.999 - . logic_name=eponine scaffold_50 . biological_region 4374 4378 0.999 - . logic_name=eponine scaffold_50 . biological_region 7209 7211 0.999 + . logic_name=eponine scaffold_50 . biological_region 8075 8077 0.999 + . logic_name=eponine scaffold_50 . biological_region 8082 8082 0.999 - . logic_name=eponine scaffold_50 . biological_region 8100 8102 0.999 + . logic_name=eponine scaffold_50 . biological_region 8127 8130 0.999 - . logic_name=eponine scaffold_50 . biological_region 8293 8296 0.999 + . logic_name=eponine scaffold_50 . biological_region 8300 8303 0.999 - . logic_name=eponine scaffold_50 . biological_region 8351 8354 0.999 + . logic_name=eponine scaffold_50 . biological_region 8386 8386 0.999 + . logic_name=eponine scaffold_50 . repeat_region 9462 9498 . ? . description=trf scaffold_50 ensembl protein_coding_gene 21 475 . - . ID=Physo136965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500001;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 21 475 . - . ID=Physo136965;Parent=Physo136965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 21 475 . - . ID=Physo136965.1;Parent=Physo136965;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_50 . CDS 23 475 . - 0 ID=Physo136965;Parent=Physo136965;rank=1 scaffold_50 ensembl protein_coding_gene 934 1390 . + . ID=Physo136966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500002;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 934 1390 . + . ID=Physo136966;Parent=Physo136966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 934 1311 . + 0 ID=Physo136966;Parent=Physo136966;rank=1 scaffold_50 . exon 934 1311 . + . ID=Physo136966.1;Parent=Physo136966;constitutive=1;rank=1 scaffold_50 . CDS 1367 1390 . + 0 ID=Physo136966;Parent=Physo136966;rank=2 scaffold_50 . exon 1367 1390 . + . ID=Physo136966.2;Parent=Physo136966;constitutive=1;rank=2 scaffold_50 ensembl protein_coding_gene 1696 3215 . - . ID=Physo136967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500003;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 1696 3215 . - . ID=Physo136967;Parent=Physo136967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 1696 1709 . - 0 ID=Physo136967;Parent=Physo136967;rank=2 scaffold_50 . exon 1696 1709 . - . ID=Physo136967.2;Parent=Physo136967;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 1799 3215 . - 0 ID=Physo136967;Parent=Physo136967;rank=1 scaffold_50 . exon 1799 3215 . - . ID=Physo136967.1;Parent=Physo136967;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 6071 8046 . - . ID=Physo136968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500004;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 6071 8046 . - . ID=Physo136968;Parent=Physo136968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 6071 6151 . - 0 ID=Physo136968;Parent=Physo136968;rank=3 scaffold_50 . exon 6071 6151 . - . ID=Physo136968.3;Parent=Physo136968;constitutive=1;rank=3 scaffold_50 . CDS 6241 7773 . - 0 ID=Physo136968;Parent=Physo136968;rank=2 scaffold_50 . exon 6241 7773 . - . ID=Physo136968.2;Parent=Physo136968;constitutive=1;rank=2 scaffold_50 . CDS 7861 8046 . - 0 ID=Physo136968;Parent=Physo136968;rank=1 scaffold_50 . exon 7861 8046 . - . ID=Physo136968.1;Parent=Physo136968;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 11176 12204 . + . ID=Physo136969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500005;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 11176 12204 . + . ID=Physo136969;Parent=Physo136969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 11176 12204 . + 0 ID=Physo136969;Parent=Physo136969;rank=1 scaffold_50 . exon 11176 12204 . + . ID=Physo136969.1;Parent=Physo136969;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 13154 13999 . - . ID=Physo136970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500006;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 13154 13999 . - . ID=Physo136970;Parent=Physo136970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 13154 13313 . - 0 ID=Physo136970;Parent=Physo136970;rank=4 scaffold_50 . exon 13154 13313 . - . ID=Physo136970.4;Parent=Physo136970;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 13395 13573 . - 0 ID=Physo136970;Parent=Physo136970;rank=3 scaffold_50 . exon 13395 13573 . - . ID=Physo136970.3;Parent=Physo136970;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 13641 13746 . - 0 ID=Physo136970;Parent=Physo136970;rank=2 scaffold_50 . exon 13641 13746 . - . ID=Physo136970.2;Parent=Physo136970;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 13878 13999 . - 0 ID=Physo136970;Parent=Physo136970;rank=1 scaffold_50 . exon 13878 13999 . - . ID=Physo136970.1;Parent=Physo136970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 16506 18025 . + . ID=Physo136971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500007;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 16506 18025 . + . ID=Physo136971;Parent=Physo136971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 16506 16939 . + . ID=Physo136971.1;Parent=Physo136971;constitutive=1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 16571 16939 . + 0 ID=Physo136971;Parent=Physo136971;rank=1 scaffold_50 . CDS 17019 18014 . + 0 ID=Physo136971;Parent=Physo136971;rank=2 scaffold_50 . exon 17019 18025 . + . ID=Physo136971.2;Parent=Physo136971;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_50 . biological_region 22651 22652 0.999 + . logic_name=eponine scaffold_50 . repeat_region 24921 24947 . ? . description=trf scaffold_50 . biological_region 25953 25954 0.999 + . logic_name=eponine scaffold_50 . biological_region 26215 26221 0.999 + . logic_name=eponine scaffold_50 . biological_region 26304 26307 0.999 - . logic_name=eponine scaffold_50 . biological_region 26870 26870 0.999 + . logic_name=eponine scaffold_50 . biological_region 29062 29068 0.999 + . logic_name=eponine scaffold_50 . biological_region 29119 29122 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 27688 29296 . - . ID=Physo118214;biotype=protein_coding;external_name=estExt_Genewise1.C_500072;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 27688 29296 . - . ID=Physo118214;Parent=Physo118214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 27688 28105 . - 0 ID=Physo118214;Parent=Physo118214;rank=3 scaffold_50 . exon 27688 28105 . - . ID=Physo118214.3;Parent=Physo118214;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 28179 28466 . - 0 ID=Physo118214;Parent=Physo118214;rank=2 scaffold_50 . exon 28179 28466 . - . ID=Physo118214.2;Parent=Physo118214;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_50 . CDS 28608 29296 . - 0 ID=Physo118214;Parent=Physo118214;rank=1 scaffold_50 . exon 28608 29296 . - . ID=Physo118214.1;Parent=Physo118214;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 22140 23111 . - . ID=Physo136972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500008;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 22140 23111 . - . ID=Physo136972;Parent=Physo136972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 22140 22392 . - 0 ID=Physo136972;Parent=Physo136972;rank=4 scaffold_50 . exon 22140 22392 . - . ID=Physo136972.4;Parent=Physo136972;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 22412 22653 . - 0 ID=Physo136972;Parent=Physo136972;rank=3 scaffold_50 . exon 22412 22653 . - . ID=Physo136972.3;Parent=Physo136972;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 22683 22832 . - 0 ID=Physo136972;Parent=Physo136972;rank=2 scaffold_50 . exon 22683 22832 . - . ID=Physo136972.2;Parent=Physo136972;constitutive=1;rank=2 scaffold_50 . CDS 23097 23111 . - 0 ID=Physo136972;Parent=Physo136972;rank=1 scaffold_50 . exon 23097 23111 . - . ID=Physo136972.1;Parent=Physo136972;constitutive=1;rank=1 scaffold_50 . repeat_region 30548 30566 . ? . description=dust scaffold_50 . repeat_region 30808 30821 . ? . description=dust scaffold_50 . repeat_region 34136 34149 . ? . description=dust scaffold_50 . repeat_region 34391 34409 . ? . description=dust scaffold_50 . repeat_region 34699 34748 . ? . description=dust scaffold_50 . repeat_region 35462 35515 . ? . description=dust scaffold_50 ensembl protein_coding_gene 34079 35622 . - . ID=Physo136974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500010;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 34079 35622 . - . ID=Physo136974;Parent=Physo136974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 34079 34417 . - 0 ID=Physo136974;Parent=Physo136974;rank=3 scaffold_50 . exon 34079 34417 . - . ID=Physo136974.3;Parent=Physo136974;constitutive=1;rank=3 scaffold_50 . CDS 34459 34515 . - 0 ID=Physo136974;Parent=Physo136974;rank=2 scaffold_50 . exon 34459 34515 . - . ID=Physo136974.2;Parent=Physo136974;constitutive=1;rank=2 scaffold_50 . CDS 34810 35622 . - 0 ID=Physo136974;Parent=Physo136974;rank=1 scaffold_50 . exon 34810 35622 . - . ID=Physo136974.1;Parent=Physo136974;constitutive=1;rank=1 scaffold_50 . repeat_region 39596 39754 . ? . description=trf scaffold_50 . biological_region 40096 40098 0.999 + . logic_name=eponine scaffold_50 . biological_region 40125 40129 0.999 + . logic_name=eponine scaffold_50 . biological_region 40237 40241 0.999 + . logic_name=eponine scaffold_50 . biological_region 40325 40327 0.999 - . logic_name=eponine scaffold_50 . biological_region 40341 40343 0.999 + . logic_name=eponine scaffold_50 . biological_region 40365 40367 0.999 - . logic_name=eponine scaffold_50 . repeat_region 41255 41279 . ? . description=trf scaffold_50 . repeat_region 42138 42206 . ? . description=trf scaffold_50 . biological_region 42910 42914 0.999 + . logic_name=eponine scaffold_50 . biological_region 43495 43496 0.999 - . logic_name=eponine scaffold_50 . repeat_region 43637 43809 . ? . description=trf scaffold_50 . repeat_region 43646 43738 . ? . description=trf scaffold_50 . repeat_region 43678 43856 . ? . description=trf scaffold_50 . repeat_region 43694 43848 . ? . description=trf scaffold_50 . repeat_region 43857 44241 . ? . description=trf scaffold_50 . repeat_region 43857 44250 . ? . description=trf scaffold_50 . repeat_region 43857 44325 . ? . description=trf scaffold_50 . repeat_region 43879 44296 . ? . description=trf scaffold_50 . biological_region 44364 44366 0.999 + . logic_name=eponine scaffold_50 . biological_region 49361 49365 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 43549 49263 . - . ID=Physo108989;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500002;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 43549 49263 . - . ID=Physo108989;Parent=Physo108989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 43549 44309 . - 0 ID=Physo108989;Parent=Physo108989;rank=3 scaffold_50 . exon 43549 44309 . - . ID=Physo108989.3;Parent=Physo108989;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 44400 48857 . - 0 ID=Physo108989;Parent=Physo108989;rank=2 scaffold_50 . exon 44400 48857 . - . ID=Physo108989.2;Parent=Physo108989;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 49014 49263 . - 0 ID=Physo108989;Parent=Physo108989;rank=1 scaffold_50 . exon 49014 49263 . - . ID=Physo108989.1;Parent=Physo108989;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . repeat_region 52362 52412 . ? . description=dust scaffold_50 ensembl snoRNA_gene 57404 57492 . + . ID=EPrPSOG00000000065;biotype=snoRNA;description=Small nucleolar RNA SNORD24 [Source:RFAM%3BAcc:RF00069];external_name=SNORD24;logic_name=ncrna_eg scaffold_50 ensembl snoRNA 57404 57492 . + . ID=EPrPSOT00000000065;Parent=EPrPSOG00000000065;biotype=snoRNA;logic_name=ncrna_eg scaffold_50 . exon 57404 57492 . + . ID=EPrPSOE00000000065;Parent=EPrPSOT00000000065;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 49636 50400 . - . ID=Physo136977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500013;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 49636 50400 . - . ID=Physo136977;Parent=Physo136977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 49636 50400 . - 0 ID=Physo136977;Parent=Physo136977;rank=1 scaffold_50 . exon 49636 50400 . - . ID=Physo136977.1;Parent=Physo136977;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 51071 51868 . - . ID=Physo136978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500014;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 51071 51868 . - . ID=Physo136978;Parent=Physo136978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 51071 51423 . - 0 ID=Physo136978;Parent=Physo136978;rank=2 scaffold_50 . exon 51071 51423 . - . ID=Physo136978.2;Parent=Physo136978;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 51814 51868 . - 0 ID=Physo136978;Parent=Physo136978;rank=1 scaffold_50 . exon 51814 51868 . - . ID=Physo136978.1;Parent=Physo136978;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 52485 55390 . - . ID=Physo136979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500015;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 52485 55390 . - . ID=Physo136979;Parent=Physo136979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 52485 52702 . - 0 ID=Physo136979;Parent=Physo136979;rank=4 scaffold_50 . exon 52485 52702 . - . ID=Physo136979.4;Parent=Physo136979;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 52773 53029 . - 0 ID=Physo136979;Parent=Physo136979;rank=3 scaffold_50 . exon 52773 53029 . - . ID=Physo136979.3;Parent=Physo136979;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 53096 54726 . - 0 ID=Physo136979;Parent=Physo136979;rank=2 scaffold_50 . exon 53096 54726 . - . ID=Physo136979.2;Parent=Physo136979;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_50 . CDS 54800 55390 . - 0 ID=Physo136979;Parent=Physo136979;rank=1 scaffold_50 . exon 54800 55390 . - . ID=Physo136979.1;Parent=Physo136979;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 55562 56899 . - . ID=Physo136980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500016;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 55562 56899 . - . ID=Physo136980;Parent=Physo136980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 55562 55969 . - 0 ID=Physo136980;Parent=Physo136980;rank=6 scaffold_50 . exon 55562 55969 . - . ID=Physo136980.6;Parent=Physo136980;constitutive=1;rank=6 scaffold_50 . CDS 56034 56063 . - 0 ID=Physo136980;Parent=Physo136980;rank=5 scaffold_50 . exon 56034 56063 . - . ID=Physo136980.5;Parent=Physo136980;constitutive=1;rank=5 scaffold_50 . CDS 56139 56151 . - 0 ID=Physo136980;Parent=Physo136980;rank=4 scaffold_50 . exon 56139 56151 . - . ID=Physo136980.4;Parent=Physo136980;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 56329 56462 . - 0 ID=Physo136980;Parent=Physo136980;rank=3 scaffold_50 . exon 56329 56462 . - . ID=Physo136980.3;Parent=Physo136980;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 56533 56773 . - 0 ID=Physo136980;Parent=Physo136980;rank=2 scaffold_50 . exon 56533 56773 . - . ID=Physo136980.2;Parent=Physo136980;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 56850 56899 . - 0 ID=Physo136980;Parent=Physo136980;rank=1 scaffold_50 . exon 56850 56899 . - . ID=Physo136980.1;Parent=Physo136980;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . biological_region 60140 60142 0.999 - . logic_name=eponine scaffold_50 . biological_region 60946 60950 0.999 + . logic_name=eponine scaffold_50 . biological_region 63826 63830 0.999 + . logic_name=eponine scaffold_50 . biological_region 63936 63942 0.999 - . logic_name=eponine scaffold_50 . repeat_region 64348 64427 . ? . description=trf scaffold_50 . repeat_region 64366 64419 . ? . description=trf scaffold_50 . biological_region 64772 64774 0.999 + . logic_name=eponine scaffold_50 . repeat_region 65030 65071 . ? . description=trf scaffold_50 . biological_region 65307 65312 0.999 + . logic_name=eponine scaffold_50 . biological_region 65325 65328 0.999 + . logic_name=eponine scaffold_50 . biological_region 65350 65356 0.999 - . logic_name=eponine scaffold_50 . biological_region 65353 65360 0.999 + . logic_name=eponine scaffold_50 . biological_region 65370 65377 0.999 - . logic_name=eponine scaffold_50 . biological_region 67630 67635 0.999 + . logic_name=eponine scaffold_50 . biological_region 67753 67755 0.999 - . logic_name=eponine scaffold_50 . biological_region 68050 68059 0.999 + . logic_name=eponine scaffold_50 . biological_region 68075 68084 0.999 + . logic_name=eponine scaffold_50 . biological_region 68124 68125 0.999 - . logic_name=eponine scaffold_50 . biological_region 68141 68149 0.999 - . logic_name=eponine scaffold_50 . biological_region 68157 68159 0.999 + . logic_name=eponine scaffold_50 . biological_region 68249 68250 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 68047 70369 . + . ID=Physo108990;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500003;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 68047 70369 . + . ID=Physo108990;Parent=Physo108990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 68047 69495 . + 0 ID=Physo108990;Parent=Physo108990;rank=1 scaffold_50 . exon 68047 69495 . + . ID=Physo108990.1;Parent=Physo108990;constitutive=1;rank=1 scaffold_50 . CDS 69541 69861 . + 0 ID=Physo108990;Parent=Physo108990;rank=2 scaffold_50 . CDS 69939 70319 . + 0 ID=Physo108990;Parent=Physo108990;rank=3 scaffold_50 ensembl protein_coding_gene 59402 61375 . - . ID=Physo136981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500017;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 59402 61375 . - . ID=Physo136981;Parent=Physo136981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 59402 59932 . - 0 ID=Physo136981;Parent=Physo136981;rank=3 scaffold_50 . exon 59402 59932 . - . ID=Physo136981.3;Parent=Physo136981;constitutive=1;rank=3 scaffold_50 . CDS 60131 61086 . - 0 ID=Physo136981;Parent=Physo136981;rank=2 scaffold_50 . exon 60131 61086 . - . ID=Physo136981.2;Parent=Physo136981;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 61330 61375 . - 0 ID=Physo136981;Parent=Physo136981;rank=1 scaffold_50 . exon 61330 61375 . - . ID=Physo136981.1;Parent=Physo136981;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 64982 66352 . + . ID=Physo136982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500018;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 64982 66352 . + . ID=Physo136982;Parent=Physo136982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 64982 66352 . + 0 ID=Physo136982;Parent=Physo136982;rank=1 scaffold_50 . exon 64982 66352 . + . ID=Physo136982.1;Parent=Physo136982;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 67001 67877 . - . ID=Physo136983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500019;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 67001 67877 . - . ID=Physo136983;Parent=Physo136983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 67001 67210 . - . ID=Physo136983.3;Parent=Physo136983;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_50 . CDS 67085 67210 . - 0 ID=Physo136983;Parent=Physo136983;rank=3 scaffold_50 . CDS 67291 67335 . - 0 ID=Physo136983;Parent=Physo136983;rank=2 scaffold_50 . exon 67291 67335 . - . ID=Physo136983.2;Parent=Physo136983;constitutive=1;rank=2 scaffold_50 . CDS 67416 67877 . - 0 ID=Physo136983;Parent=Physo136983;rank=1 scaffold_50 . exon 67416 67877 . - . ID=Physo136983.1;Parent=Physo136983;constitutive=1;rank=1 scaffold_50 . exon 69541 69861 . + . ID=Physo108990.2;Parent=Physo108990;constitutive=1;rank=2 scaffold_50 . exon 69939 70369 . + . ID=Physo108990.3;Parent=Physo108990;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_50 ensembl protein_coding_gene 70462 71940 . + . ID=Physo136985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500021;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 70462 71940 . + . ID=Physo136985;Parent=Physo136985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 70462 70537 . + 0 ID=Physo136985;Parent=Physo136985;rank=1 scaffold_50 . exon 70462 70537 . + . ID=Physo136985.1;Parent=Physo136985;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 70613 70846 . + 0 ID=Physo136985;Parent=Physo136985;rank=2 scaffold_50 . exon 70613 70846 . + . ID=Physo136985.2;Parent=Physo136985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 70925 71011 . + 0 ID=Physo136985;Parent=Physo136985;rank=3 scaffold_50 . exon 70925 71011 . + . ID=Physo136985.3;Parent=Physo136985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 71088 71208 . + 0 ID=Physo136985;Parent=Physo136985;rank=4 scaffold_50 . exon 71088 71208 . + . ID=Physo136985.4;Parent=Physo136985;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_50 . CDS 71285 71436 . + 0 ID=Physo136985;Parent=Physo136985;rank=5 scaffold_50 . exon 71285 71436 . + . ID=Physo136985.5;Parent=Physo136985;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_50 . CDS 71498 71940 . + 0 ID=Physo136985;Parent=Physo136985;rank=6 scaffold_50 . exon 71498 71940 . + . ID=Physo136985.6;Parent=Physo136985;constitutive=1;ensembl_phase=1;rank=6 scaffold_50 ensembl protein_coding_gene 72203 75710 . - . ID=Physo136986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500022;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 72203 75710 . - . ID=Physo136986;Parent=Physo136986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 72203 72315 . - 0 ID=Physo136986;Parent=Physo136986;rank=7 scaffold_50 . exon 72203 72315 . - . ID=Physo136986.7;Parent=Physo136986;constitutive=1;ensembl_phase=1;rank=7 scaffold_50 . CDS 72380 73616 . - 0 ID=Physo136986;Parent=Physo136986;rank=6 scaffold_50 . exon 72380 73616 . - . ID=Physo136986.6;Parent=Physo136986;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_50 . CDS 73684 73735 . - 0 ID=Physo136986;Parent=Physo136986;rank=5 scaffold_50 . exon 73684 73735 . - . ID=Physo136986.5;Parent=Physo136986;constitutive=1;ensembl_phase=2;rank=5 scaffold_50 . CDS 73858 73961 . - 0 ID=Physo136986;Parent=Physo136986;rank=4 scaffold_50 . exon 73858 73961 . - . ID=Physo136986.4;Parent=Physo136986;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_50 . CDS 74026 75198 . - 0 ID=Physo136986;Parent=Physo136986;rank=3 scaffold_50 . exon 74026 75198 . - . ID=Physo136986.3;Parent=Physo136986;constitutive=1;rank=3 scaffold_50 . CDS 75267 75386 . - 0 ID=Physo136986;Parent=Physo136986;rank=2 scaffold_50 . exon 75267 75386 . - . ID=Physo136986.2;Parent=Physo136986;constitutive=1;rank=2 scaffold_50 . CDS 75474 75710 . - 0 ID=Physo136986;Parent=Physo136986;rank=1 scaffold_50 . exon 75474 75710 . - . ID=Physo136986.1;Parent=Physo136986;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 76401 78512 . + . ID=Physo136987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500023;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 76401 78512 . + . ID=Physo136987;Parent=Physo136987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 76401 78512 . + 0 ID=Physo136987;Parent=Physo136987;rank=1 scaffold_50 . exon 76401 78512 . + . ID=Physo136987.1;Parent=Physo136987;constitutive=1;rank=1 scaffold_50 . biological_region 79607 79609 0.999 - . logic_name=eponine scaffold_50 . repeat_region 79938 80114 . ? . description=trf scaffold_50 . biological_region 80966 80969 0.999 + . logic_name=eponine scaffold_50 . biological_region 83780 83781 0.999 - . logic_name=eponine scaffold_50 . repeat_region 84910 84938 . ? . description=dust scaffold_50 . biological_region 85980 85982 0.999 - . logic_name=eponine scaffold_50 . biological_region 86105 86106 0.999 - . logic_name=eponine scaffold_50 . biological_region 86684 86687 0.999 + . logic_name=eponine scaffold_50 . repeat_region 86707 86795 . ? . description=trf scaffold_50 . biological_region 86749 86750 0.999 - . logic_name=eponine scaffold_50 . biological_region 86800 86809 0.999 - . logic_name=eponine scaffold_50 . biological_region 87104 87107 0.999 - . logic_name=eponine scaffold_50 . biological_region 88056 88059 0.999 - . logic_name=eponine scaffold_50 . biological_region 88088 88089 0.999 - . logic_name=eponine scaffold_50 . biological_region 88109 88116 0.999 + . logic_name=eponine scaffold_50 . biological_region 88209 88210 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 80450 82315 . + . ID=Physo136988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500024;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 80450 82315 . + . ID=Physo136988;Parent=Physo136988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 80450 82315 . + 0 ID=Physo136988;Parent=Physo136988;rank=1 scaffold_50 . exon 80450 82315 . + . ID=Physo136988.1;Parent=Physo136988;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 82451 83876 . - . ID=Physo136989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500025;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 82451 83876 . - . ID=Physo136989;Parent=Physo136989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 82451 83352 . - 0 ID=Physo136989;Parent=Physo136989;rank=2 scaffold_50 . exon 82451 83352 . - . ID=Physo136989.2;Parent=Physo136989;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 83681 83876 . - 0 ID=Physo136989;Parent=Physo136989;rank=1 scaffold_50 . exon 83681 83876 . - . ID=Physo136989.1;Parent=Physo136989;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 84938 91681 . + . ID=Physo136990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500026;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 84938 91681 . + . ID=Physo136990;Parent=Physo136990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 84938 85176 . + 0 ID=Physo136990;Parent=Physo136990;rank=1 scaffold_50 . exon 84938 85176 . + . ID=Physo136990.1;Parent=Physo136990;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 85197 86042 . + 0 ID=Physo136990;Parent=Physo136990;rank=2 scaffold_50 . exon 85197 86042 . + . ID=Physo136990.2;Parent=Physo136990;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_50 . CDS 86075 87168 . + 0 ID=Physo136990;Parent=Physo136990;rank=3 scaffold_50 . exon 86075 87168 . + . ID=Physo136990.3;Parent=Physo136990;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 87325 90749 . + 0 ID=Physo136990;Parent=Physo136990;rank=4 scaffold_50 . exon 87325 90749 . + . ID=Physo136990.4;Parent=Physo136990;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 90777 91586 . + 0 ID=Physo136990;Parent=Physo136990;rank=5 scaffold_50 . CDS 91664 91681 . + 0 ID=Physo136990;Parent=Physo136990;rank=6 scaffold_50 . exon 90777 91586 . + . ID=Physo136990.5;Parent=Physo136990;constitutive=1;rank=5 scaffold_50 . exon 91664 91681 . + . ID=Physo136990.6;Parent=Physo136990;constitutive=1;rank=6 scaffold_50 ensembl protein_coding_gene 95307 97784 . - . ID=Physo136991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500027;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 95307 97784 . - . ID=Physo136991;Parent=Physo136991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 95307 96701 . - 0 ID=Physo136991;Parent=Physo136991;rank=4 scaffold_50 . exon 95307 96701 . - . ID=Physo136991.4;Parent=Physo136991;constitutive=1;rank=4 scaffold_50 . CDS 96765 97531 . - 0 ID=Physo136991;Parent=Physo136991;rank=3 scaffold_50 . exon 96765 97531 . - . ID=Physo136991.3;Parent=Physo136991;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 97570 97633 . - 0 ID=Physo136991;Parent=Physo136991;rank=2 scaffold_50 . exon 97570 97633 . - . ID=Physo136991.2;Parent=Physo136991;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_50 . CDS 97713 97784 . - 0 ID=Physo136991;Parent=Physo136991;rank=1 scaffold_50 . exon 97713 97784 . - . ID=Physo136991.1;Parent=Physo136991;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 98275 99429 . + . ID=Physo136992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500028;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 98275 99429 . + . ID=Physo136992;Parent=Physo136992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 98275 98294 . + 0 ID=Physo136992;Parent=Physo136992;rank=1 scaffold_50 . exon 98275 98294 . + . ID=Physo136992.1;Parent=Physo136992;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 98835 99429 . + 0 ID=Physo136992;Parent=Physo136992;rank=2 scaffold_50 . biological_region 99172 99176 0.999 + . logic_name=eponine scaffold_50 . biological_region 100703 100704 0.999 + . logic_name=eponine scaffold_50 . biological_region 100720 100721 0.999 + . logic_name=eponine scaffold_50 . biological_region 100861 100868 0.999 - . logic_name=eponine scaffold_50 . biological_region 102453 102456 0.999 + . logic_name=eponine scaffold_50 . biological_region 103514 103517 0.999 + . logic_name=eponine scaffold_50 . biological_region 103543 103544 0.999 + . logic_name=eponine scaffold_50 . biological_region 103570 103574 0.999 + . logic_name=eponine scaffold_50 . biological_region 104015 104018 0.999 - . logic_name=eponine scaffold_50 . biological_region 104052 104058 0.999 + . logic_name=eponine scaffold_50 . biological_region 104054 104059 0.999 - . logic_name=eponine scaffold_50 . biological_region 104076 104079 0.999 + . logic_name=eponine scaffold_50 . repeat_region 104362 104389 . ? . description=trf scaffold_50 . biological_region 104383 104386 0.999 + . logic_name=eponine scaffold_50 . biological_region 104397 104404 0.999 + . logic_name=eponine scaffold_50 . biological_region 104421 104431 0.999 + . logic_name=eponine scaffold_50 . biological_region 104434 104438 0.999 - . logic_name=eponine scaffold_50 . repeat_region 105082 105108 . ? . description=dust scaffold_50 . repeat_region 105082 105108 . ? . description=trf scaffold_50 . exon 98835 99429 . + . ID=Physo136992.2;Parent=Physo136992;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 ensembl protein_coding_gene 99851 103088 . + . ID=Physo136993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500029;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 99851 103088 . + . ID=Physo136993;Parent=Physo136993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 99851 99959 . + 0 ID=Physo136993;Parent=Physo136993;rank=1 scaffold_50 . exon 99851 99959 . + . ID=Physo136993.1;Parent=Physo136993;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 100025 100214 . + 0 ID=Physo136993;Parent=Physo136993;rank=2 scaffold_50 . exon 100025 100214 . + . ID=Physo136993.2;Parent=Physo136993;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_50 . CDS 100283 103088 . + 0 ID=Physo136993;Parent=Physo136993;rank=3 scaffold_50 . exon 100283 103088 . + . ID=Physo136993.3;Parent=Physo136993;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 ensembl protein_coding_gene 103381 103722 . - . ID=Physo136994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500030;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 103381 103722 . - . ID=Physo136994;Parent=Physo136994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 103381 103722 . - 0 ID=Physo136994;Parent=Physo136994;rank=1 scaffold_50 . exon 103381 103722 . - . ID=Physo136994.1;Parent=Physo136994;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 103983 106661 . + . ID=Physo136995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500031;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 103983 106661 . + . ID=Physo136995;Parent=Physo136995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 103983 106661 . + 0 ID=Physo136995;Parent=Physo136995;rank=1 scaffold_50 . exon 103983 106661 . + . ID=Physo136995.1;Parent=Physo136995;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 106969 108059 . - . ID=Physo136996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500032;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 106969 108059 . - . ID=Physo136996;Parent=Physo136996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 106969 107605 . - 0 ID=Physo136996;Parent=Physo136996;rank=4 scaffold_50 . exon 106969 107605 . - . ID=Physo136996.4;Parent=Physo136996;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 107675 107802 . - 0 ID=Physo136996;Parent=Physo136996;rank=3 scaffold_50 . exon 107675 107802 . - . ID=Physo136996.3;Parent=Physo136996;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 107886 107912 . - 0 ID=Physo136996;Parent=Physo136996;rank=2 scaffold_50 . exon 107886 107912 . - . ID=Physo136996.2;Parent=Physo136996;constitutive=1;rank=2 scaffold_50 . CDS 108036 108059 . - 0 ID=Physo136996;Parent=Physo136996;rank=1 scaffold_50 . exon 108036 108059 . - . ID=Physo136996.1;Parent=Physo136996;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 110042 111401 . + . ID=Physo108991;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500004;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 110042 111401 . + . ID=Physo108991;Parent=Physo108991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 110042 111049 . + . ID=Physo108991.1;Parent=Physo108991;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 110074 111049 . + 0 ID=Physo108991;Parent=Physo108991;rank=1 scaffold_50 . CDS 111139 111266 . + 0 ID=Physo108991;Parent=Physo108991;rank=2 scaffold_50 . exon 111139 111266 . + . ID=Physo108991.2;Parent=Physo108991;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 111297 111401 . + 0 ID=Physo108991;Parent=Physo108991;rank=3 scaffold_50 . exon 111297 111401 . + . ID=Physo108991.3;Parent=Physo108991;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 111656 113698 . - . ID=Physo136998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500034;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 111656 113698 . - . ID=Physo136998;Parent=Physo136998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 111656 112544 . - 0 ID=Physo136998;Parent=Physo136998;rank=2 scaffold_50 . exon 111656 112544 . - . ID=Physo136998.2;Parent=Physo136998;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 112770 113698 . - 0 ID=Physo136998;Parent=Physo136998;rank=1 scaffold_50 . exon 112770 113698 . - . ID=Physo136998.1;Parent=Physo136998;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 114008 114804 . - . ID=Physo136999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500035;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 114008 114804 . - . ID=Physo136999;Parent=Physo136999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 114008 114354 . - 0 ID=Physo136999;Parent=Physo136999;rank=2 scaffold_50 . exon 114008 114354 . - . ID=Physo136999.2;Parent=Physo136999;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 114447 114804 . - 0 ID=Physo136999;Parent=Physo136999;rank=1 scaffold_50 . exon 114447 114804 . - . ID=Physo136999.1;Parent=Physo136999;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 115001 116676 . + . ID=Physo137000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500036;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 115001 116676 . + . ID=Physo137000;Parent=Physo137000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 115001 115068 . + . ID=Physo137000.1;Parent=Physo137000;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_50 . CDS 115049 115068 . + 0 ID=Physo137000;Parent=Physo137000;rank=1 scaffold_50 . CDS 115160 116609 . + 0 ID=Physo137000;Parent=Physo137000;rank=2 scaffold_50 . exon 115160 116676 . + . ID=Physo137000.2;Parent=Physo137000;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_50 ensembl protein_coding_gene 116675 118828 . - . ID=Physo137001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500037;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 116675 118828 . - . ID=Physo137001;Parent=Physo137001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 116675 118828 . - 0 ID=Physo137001;Parent=Physo137001;rank=1 scaffold_50 . exon 116675 118828 . - . ID=Physo137001.1;Parent=Physo137001;constitutive=1;rank=1 scaffold_50 . biological_region 118521 118528 0.999 + . logic_name=eponine scaffold_50 . biological_region 118570 118573 0.999 - . logic_name=eponine scaffold_50 . repeat_region 118666 118699 . ? . description=dust scaffold_50 . repeat_region 118958 136147 . - . description=Polinton-1_PI scaffold_50 . repeat_region 119226 119234 . ? . description=dust scaffold_50 . repeat_region 119602 119609 . ? . description=dust scaffold_50 . repeat_region 122511 122520 . ? . description=dust scaffold_50 . repeat_region 127075 127082 . ? . description=dust scaffold_50 . repeat_region 127171 127178 . ? . description=dust scaffold_50 ensembl protein_coding_gene 134243 135776 . - . ID=Physo137002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500038;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 134243 135776 . - . ID=Physo137002;Parent=Physo137002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 134243 135139 . - 0 ID=Physo137002;Parent=Physo137002;rank=3 scaffold_50 . exon 134243 135139 . - . ID=Physo137002.3;Parent=Physo137002;constitutive=1;rank=3 scaffold_50 . CDS 135159 135620 . - 0 ID=Physo137002;Parent=Physo137002;rank=2 scaffold_50 . exon 135159 135620 . - . ID=Physo137002.2;Parent=Physo137002;constitutive=1;rank=2 scaffold_50 . CDS 135699 135776 . - 0 ID=Physo137002;Parent=Physo137002;rank=1 scaffold_50 . exon 135699 135776 . - . ID=Physo137002.1;Parent=Physo137002;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 136100 137589 . - . ID=Physo137003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500039;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 136100 137589 . - . ID=Physo137003;Parent=Physo137003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 136100 136421 . - . ID=Physo137003.5;Parent=Physo137003;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_50 . CDS 136206 136421 . - 0 ID=Physo137003;Parent=Physo137003;rank=5 scaffold_50 . CDS 136478 136968 . - 0 ID=Physo137003;Parent=Physo137003;rank=4 scaffold_50 . exon 136478 136968 . - . ID=Physo137003.4;Parent=Physo137003;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 137041 137268 . - 0 ID=Physo137003;Parent=Physo137003;rank=3 scaffold_50 . exon 137041 137268 . - . ID=Physo137003.3;Parent=Physo137003;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 137403 137452 . - 0 ID=Physo137003;Parent=Physo137003;rank=2 scaffold_50 . exon 137403 137452 . - . ID=Physo137003.2;Parent=Physo137003;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 137553 137587 . - 0 ID=Physo137003;Parent=Physo137003;rank=1 scaffold_50 . exon 137553 137589 . - . ID=Physo137003.1;Parent=Physo137003;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_50 . repeat_region 139053 139083 . ? . description=dust scaffold_50 . repeat_region 139054 139083 . ? . description=trf scaffold_50 . repeat_region 142584 142631 . ? . description=trf scaffold_50 . biological_region 145128 145129 0.999 + . logic_name=eponine scaffold_50 . repeat_region 145826 145838 . ? . description=dust scaffold_50 . biological_region 146311 146313 0.999 + . logic_name=eponine scaffold_50 . biological_region 146948 146951 0.999 + . logic_name=eponine scaffold_50 . biological_region 147007 147011 0.999 + . logic_name=eponine scaffold_50 . repeat_region 147525 147532 . ? . description=dust scaffold_50 . repeat_region 147594 147606 . ? . description=dust scaffold_50 ensembl protein_coding_gene 138883 140082 . + . ID=Physo137004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500040;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 138883 140082 . + . ID=Physo137004;Parent=Physo137004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 138883 139042 . + 0 ID=Physo137004;Parent=Physo137004;rank=1 scaffold_50 . exon 138883 139042 . + . ID=Physo137004.1;Parent=Physo137004;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 139129 139313 . + 0 ID=Physo137004;Parent=Physo137004;rank=2 scaffold_50 . exon 139129 139313 . + . ID=Physo137004.2;Parent=Physo137004;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 139385 139474 . + 0 ID=Physo137004;Parent=Physo137004;rank=3 scaffold_50 . exon 139385 139474 . + . ID=Physo137004.3;Parent=Physo137004;constitutive=1;rank=3 scaffold_50 . CDS 139544 139838 . + 0 ID=Physo137004;Parent=Physo137004;rank=4 scaffold_50 . exon 139544 139838 . + . ID=Physo137004.4;Parent=Physo137004;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_50 . CDS 139928 140082 . + 0 ID=Physo137004;Parent=Physo137004;rank=5 scaffold_50 . exon 139928 140082 . + . ID=Physo137004.5;Parent=Physo137004;constitutive=1;ensembl_phase=1;rank=5 scaffold_50 ensembl protein_coding_gene 144064 145455 . + . ID=Physo137005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500041;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 144064 145455 . + . ID=Physo137005;Parent=Physo137005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 144064 145455 . + 0 ID=Physo137005;Parent=Physo137005;rank=1 scaffold_50 . exon 144064 145455 . + . ID=Physo137005.1;Parent=Physo137005;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 147647 150618 . + . ID=Physo137006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500042;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 147647 150618 . + . ID=Physo137006;Parent=Physo137006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 147647 147700 . + 0 ID=Physo137006;Parent=Physo137006;rank=1 scaffold_50 . exon 147647 147700 . + . ID=Physo137006.1;Parent=Physo137006;constitutive=1;rank=1 scaffold_50 . CDS 147803 147922 . + 0 ID=Physo137006;Parent=Physo137006;rank=2 scaffold_50 . exon 147803 147922 . + . ID=Physo137006.2;Parent=Physo137006;constitutive=1;rank=2 scaffold_50 . CDS 148006 150618 . + 0 ID=Physo137006;Parent=Physo137006;rank=3 scaffold_50 . exon 148006 150618 . + . ID=Physo137006.3;Parent=Physo137006;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 153788 156718 . + . ID=Physo118239;biotype=protein_coding;description=Putative P-type ATPase [Source:UniProtKB/TrEMBL%3BAcc:B5M4V2];external_name=estExt_Genewise1.C_500097;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 153788 156718 . + . ID=Physo118239;Parent=Physo118239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 153788 154866 . + . ID=Physo118239.1;Parent=Physo118239;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_50 . CDS 153968 154866 . + 0 ID=Physo118239;Parent=Physo118239;rank=1 scaffold_50 . CDS 154909 155551 . + 0 ID=Physo118239;Parent=Physo118239;rank=2 scaffold_50 . exon 154909 155551 . + . ID=Physo118239.2;Parent=Physo118239;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 155591 156628 . + 0 ID=Physo118239;Parent=Physo118239;rank=3 scaffold_50 . exon 155591 156718 . + . ID=Physo118239.3;Parent=Physo118239;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_50 ensembl protein_coding_gene 150783 152996 . - . ID=Physo137007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500043;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 150783 152996 . - . ID=Physo137007;Parent=Physo137007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 150783 152996 . - 0 ID=Physo137007;Parent=Physo137007;rank=1 scaffold_50 . exon 150783 152996 . - . ID=Physo137007.1;Parent=Physo137007;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 156738 159065 . - . ID=Physo137009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500045;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 156738 159065 . - . ID=Physo137009;Parent=Physo137009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 156738 159065 . - 0 ID=Physo137009;Parent=Physo137009;rank=1 scaffold_50 . exon 156738 159065 . - . ID=Physo137009.1;Parent=Physo137009;constitutive=1;rank=1 scaffold_50 . biological_region 159457 159460 0.999 - . logic_name=eponine scaffold_50 . repeat_region 160818 160855 . ? . description=dust scaffold_50 . biological_region 160895 160899 0.999 - . logic_name=eponine scaffold_50 . repeat_region 160901 160939 . ? . description=dust scaffold_50 . biological_region 160932 160934 0.999 - . logic_name=eponine scaffold_50 . biological_region 160954 160959 0.999 - . logic_name=eponine scaffold_50 . biological_region 164345 164349 0.999 + . logic_name=eponine scaffold_50 . biological_region 164415 164418 0.999 - . logic_name=eponine scaffold_50 . biological_region 165694 165697 0.999 - . logic_name=eponine scaffold_50 . biological_region 165917 165922 0.999 - . logic_name=eponine scaffold_50 . repeat_region 166038 166061 . ? . description=trf scaffold_50 ensembl protein_coding_gene 164693 165754 . + . ID=Physo108992;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500005;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 164693 165754 . + . ID=Physo108992;Parent=Physo108992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 164693 164772 . + . ID=Physo108992.1;Parent=Physo108992;constitutive=1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 164698 164772 . + 0 ID=Physo108992;Parent=Physo108992;rank=1 scaffold_50 . CDS 164861 165754 . + 0 ID=Physo108992;Parent=Physo108992;rank=2 scaffold_50 . exon 164861 165754 . + . ID=Physo108992.2;Parent=Physo108992;constitutive=1;rank=2 scaffold_50 ensembl protein_coding_gene 160808 162057 . + . ID=Physo137010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500046;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 160808 162057 . + . ID=Physo137010;Parent=Physo137010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 160808 162057 . + . ID=Physo137010.1;Parent=Physo137010;constitutive=1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 160864 162057 . + 0 ID=Physo137010;Parent=Physo137010;rank=1 scaffold_50 ensembl protein_coding_gene 162274 164415 . - . ID=Physo137011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500047;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 162274 164415 . - . ID=Physo137011;Parent=Physo137011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 162274 162647 . - 0 ID=Physo137011;Parent=Physo137011;rank=8 scaffold_50 . exon 162274 162647 . - . ID=Physo137011.8;Parent=Physo137011;constitutive=1;ensembl_phase=1;rank=8 scaffold_50 . CDS 162728 162791 . - 0 ID=Physo137011;Parent=Physo137011;rank=7 scaffold_50 . exon 162728 162791 . - . ID=Physo137011.7;Parent=Physo137011;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_50 . CDS 162862 163237 . - 0 ID=Physo137011;Parent=Physo137011;rank=6 scaffold_50 . exon 162862 163237 . - . ID=Physo137011.6;Parent=Physo137011;constitutive=1;ensembl_phase=2;rank=6 scaffold_50 . CDS 163323 163404 . - 0 ID=Physo137011;Parent=Physo137011;rank=5 scaffold_50 . exon 163323 163404 . - . ID=Physo137011.5;Parent=Physo137011;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_50 . CDS 163492 163677 . - 0 ID=Physo137011;Parent=Physo137011;rank=4 scaffold_50 . exon 163492 163677 . - . ID=Physo137011.4;Parent=Physo137011;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 163842 163902 . - 0 ID=Physo137011;Parent=Physo137011;rank=3 scaffold_50 . exon 163842 163902 . - . ID=Physo137011.3;Parent=Physo137011;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . CDS 163970 164081 . - 0 ID=Physo137011;Parent=Physo137011;rank=2 scaffold_50 . exon 163970 164081 . - . ID=Physo137011.2;Parent=Physo137011;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 164168 164415 . - 0 ID=Physo137011;Parent=Physo137011;rank=1 scaffold_50 . exon 164168 164415 . - . ID=Physo137011.1;Parent=Physo137011;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 166175 166927 . + . ID=Physo137013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500049;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 166175 166927 . + . ID=Physo137013;Parent=Physo137013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 166175 166927 . + 0 ID=Physo137013;Parent=Physo137013;rank=1 scaffold_50 . exon 166175 166927 . + . ID=Physo137013.1;Parent=Physo137013;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 167292 168343 . - . ID=Physo137014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500050;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 167292 168343 . - . ID=Physo137014;Parent=Physo137014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 167292 167409 . - 0 ID=Physo137014;Parent=Physo137014;rank=6 scaffold_50 . exon 167292 167409 . - . ID=Physo137014.6;Parent=Physo137014;constitutive=1;ensembl_phase=2;rank=6 scaffold_50 . CDS 167485 167546 . - 0 ID=Physo137014;Parent=Physo137014;rank=5 scaffold_50 . exon 167485 167546 . - . ID=Physo137014.5;Parent=Physo137014;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_50 . CDS 167614 167853 . - 0 ID=Physo137014;Parent=Physo137014;rank=4 scaffold_50 . exon 167614 167853 . - . ID=Physo137014.4;Parent=Physo137014;constitutive=1;rank=4 scaffold_50 . CDS 167925 167987 . - 0 ID=Physo137014;Parent=Physo137014;rank=3 scaffold_50 . CDS 168074 168189 . - 0 ID=Physo137014;Parent=Physo137014;rank=2 scaffold_50 . CDS 168268 168343 . - 0 ID=Physo137014;Parent=Physo137014;rank=1 scaffold_50 . exon 167925 167987 . - . ID=Physo137014.3;Parent=Physo137014;constitutive=1;rank=3 scaffold_50 . exon 168074 168189 . - . ID=Physo137014.2;Parent=Physo137014;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . exon 168268 168343 . - . ID=Physo137014.1;Parent=Physo137014;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 170586 172310 . - . ID=Physo137015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500051;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 170586 172310 . - . ID=Physo137015;Parent=Physo137015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 170586 172310 . - 0 ID=Physo137015;Parent=Physo137015;rank=1 scaffold_50 . exon 170586 172310 . - . ID=Physo137015.1;Parent=Physo137015;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 173366 174316 . - . ID=Physo137016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500052;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 173366 174316 . - . ID=Physo137016;Parent=Physo137016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 173366 173684 . - 0 ID=Physo137016;Parent=Physo137016;rank=3 scaffold_50 . exon 173366 173684 . - . ID=Physo137016.3;Parent=Physo137016;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 173753 173893 . - 0 ID=Physo137016;Parent=Physo137016;rank=2 scaffold_50 . exon 173753 173893 . - . ID=Physo137016.2;Parent=Physo137016;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_50 . CDS 174216 174316 . - 0 ID=Physo137016;Parent=Physo137016;rank=1 scaffold_50 . exon 174216 174316 . - . ID=Physo137016.1;Parent=Physo137016;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . repeat_region 179811 179838 . ? . description=trf scaffold_50 . repeat_region 181960 181967 . ? . description=dust scaffold_50 . repeat_region 182605 182629 . ? . description=trf scaffold_50 . biological_region 183430 183430 0.999 - . logic_name=eponine scaffold_50 . biological_region 183671 183675 0.999 + . logic_name=eponine scaffold_50 . biological_region 184290 184296 0.999 - . logic_name=eponine scaffold_50 . biological_region 184335 184337 0.999 - . logic_name=eponine scaffold_50 . biological_region 184345 184346 0.999 - . logic_name=eponine scaffold_50 . biological_region 184392 184397 0.999 - . logic_name=eponine scaffold_50 . biological_region 184447 184453 0.999 + . logic_name=eponine scaffold_50 . biological_region 185810 185815 0.999 + . logic_name=eponine scaffold_50 . biological_region 185817 185819 0.999 - . logic_name=eponine scaffold_50 . biological_region 185852 185852 0.999 - . logic_name=eponine scaffold_50 . biological_region 187105 187109 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 178353 181562 . + . ID=Physo137017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500053;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 178353 181562 . + . ID=Physo137017;Parent=Physo137017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 178353 178355 . + 0 ID=Physo137017;Parent=Physo137017;rank=1 scaffold_50 . exon 178353 178355 . + . ID=Physo137017.1;Parent=Physo137017;constitutive=1;rank=1 scaffold_50 . CDS 178476 178568 . + 0 ID=Physo137017;Parent=Physo137017;rank=2 scaffold_50 . exon 178476 178568 . + . ID=Physo137017.2;Parent=Physo137017;constitutive=1;rank=2 scaffold_50 . CDS 178680 181562 . + 0 ID=Physo137017;Parent=Physo137017;rank=3 scaffold_50 . exon 178680 181562 . + . ID=Physo137017.3;Parent=Physo137017;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 181724 182667 . - . ID=Physo137018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500054;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 181724 182667 . - . ID=Physo137018;Parent=Physo137018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 181724 181783 . - . ID=Physo137018.6;Parent=Physo137018;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_50 . CDS 181766 181783 . - 0 ID=Physo137018;Parent=Physo137018;rank=6 scaffold_50 . CDS 181849 181938 . - 0 ID=Physo137018;Parent=Physo137018;rank=5 scaffold_50 . exon 181849 181938 . - . ID=Physo137018.5;Parent=Physo137018;constitutive=1;rank=5 scaffold_50 . CDS 182023 182064 . - 0 ID=Physo137018;Parent=Physo137018;rank=4 scaffold_50 . exon 182023 182064 . - . ID=Physo137018.4;Parent=Physo137018;constitutive=1;rank=4 scaffold_50 . CDS 182167 182235 . - 0 ID=Physo137018;Parent=Physo137018;rank=3 scaffold_50 . exon 182167 182235 . - . ID=Physo137018.3;Parent=Physo137018;constitutive=1;rank=3 scaffold_50 . CDS 182323 182374 . - 0 ID=Physo137018;Parent=Physo137018;rank=2 scaffold_50 . exon 182323 182374 . - . ID=Physo137018.2;Parent=Physo137018;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 182451 182662 . - 0 ID=Physo137018;Parent=Physo137018;rank=1 scaffold_50 . exon 182451 182667 . - . ID=Physo137018.1;Parent=Physo137018;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_50 ensembl protein_coding_gene 182920 183911 . + . ID=Physo137019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500055;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 182920 183911 . + . ID=Physo137019;Parent=Physo137019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 182920 183497 . + 0 ID=Physo137019;Parent=Physo137019;rank=1 scaffold_50 . exon 182920 183497 . + . ID=Physo137019.1;Parent=Physo137019;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 183593 183911 . + 0 ID=Physo137019;Parent=Physo137019;rank=2 scaffold_50 . exon 183593 183911 . + . ID=Physo137019.2;Parent=Physo137019;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 ensembl protein_coding_gene 184210 185109 . + . ID=Physo137020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500056;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 184210 185109 . + . ID=Physo137020;Parent=Physo137020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 184210 185109 . + 0 ID=Physo137020;Parent=Physo137020;rank=1 scaffold_50 . exon 184210 185109 . + . ID=Physo137020.1;Parent=Physo137020;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 185136 189742 . - . ID=Physo137021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500057;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 185136 189742 . - . ID=Physo137021;Parent=Physo137021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 185136 185594 . - . ID=Physo137021.6;Parent=Physo137021;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_50 . CDS 185205 185594 . - 0 ID=Physo137021;Parent=Physo137021;rank=6 scaffold_50 . CDS 185680 186223 . - 0 ID=Physo137021;Parent=Physo137021;rank=5 scaffold_50 . exon 185680 186223 . - . ID=Physo137021.5;Parent=Physo137021;constitutive=1;ensembl_phase=2;rank=5 scaffold_50 . CDS 186368 186914 . - 0 ID=Physo137021;Parent=Physo137021;rank=4 scaffold_50 . exon 186368 186914 . - . ID=Physo137021.4;Parent=Physo137021;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_50 . CDS 186986 187189 . - 0 ID=Physo137021;Parent=Physo137021;rank=3 scaffold_50 . exon 186986 187189 . - . ID=Physo137021.3;Parent=Physo137021;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 187267 187793 . - 0 ID=Physo137021;Parent=Physo137021;rank=2 scaffold_50 . exon 187267 187793 . - . ID=Physo137021.2;Parent=Physo137021;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 187860 189742 . - 0 ID=Physo137021;Parent=Physo137021;rank=1 scaffold_50 ensembl protein_coding_gene 193220 194864 . + . ID=Physo108993;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500006;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 193220 194864 . + . ID=Physo108993;Parent=Physo108993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 193220 194815 . + 0 ID=Physo108993;Parent=Physo108993;rank=1 scaffold_50 . exon 193220 194864 . + . ID=Physo108993.1;Parent=Physo108993;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_50 . exon 187860 189742 . - . ID=Physo137021.1;Parent=Physo137021;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 194935 196907 . + . ID=Physo137023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500059;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 194935 196907 . + . ID=Physo137023;Parent=Physo137023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 194935 196735 . + 0 ID=Physo137023;Parent=Physo137023;rank=1 scaffold_50 . exon 194935 196735 . + . ID=Physo137023.1;Parent=Physo137023;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 196810 196907 . + 0 ID=Physo137023;Parent=Physo137023;rank=2 scaffold_50 . exon 196810 196907 . + . ID=Physo137023.2;Parent=Physo137023;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 ensembl protein_coding_gene 197007 198092 . - . ID=Physo137024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500060;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 197007 198092 . - . ID=Physo137024;Parent=Physo137024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 197007 198092 . - 0 ID=Physo137024;Parent=Physo137024;rank=1 scaffold_50 . exon 197007 198092 . - . ID=Physo137024.1;Parent=Physo137024;constitutive=1;rank=1 scaffold_50 . biological_region 197853 197855 0.999 - . logic_name=eponine scaffold_50 . biological_region 198012 198012 0.999 + . logic_name=eponine scaffold_50 . biological_region 199253 199255 0.999 + . logic_name=eponine scaffold_50 . biological_region 199255 199256 0.999 - . logic_name=eponine scaffold_50 . biological_region 201663 201666 0.999 - . logic_name=eponine scaffold_50 . repeat_region 205579 205588 . ? . description=dust scaffold_50 . biological_region 206791 206795 0.999 - . logic_name=eponine scaffold_50 . biological_region 206868 206869 0.999 - . logic_name=eponine scaffold_50 . repeat_region 207036 207099 . ? . description=dust scaffold_50 . repeat_region 207037 207068 . ? . description=trf scaffold_50 . repeat_region 207037 207075 . ? . description=trf scaffold_50 . biological_region 207073 207076 0.999 - . logic_name=eponine scaffold_50 . biological_region 207169 207169 0.999 - . logic_name=eponine scaffold_50 . biological_region 207177 207180 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 198263 199619 . - . ID=Physo108994;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500007;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 198263 199619 . - . ID=Physo108994;Parent=Physo108994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 198263 199619 . - . ID=Physo108994.1;Parent=Physo108994;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 198546 199583 . - 0 ID=Physo108994;Parent=Physo108994;rank=1 scaffold_50 ensembl protein_coding_gene 200705 202242 . - . ID=Physo137026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500062;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 200705 202242 . - . ID=Physo137026;Parent=Physo137026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 200705 201209 . - 0 ID=Physo137026;Parent=Physo137026;rank=5 scaffold_50 . exon 200705 201209 . - . ID=Physo137026.5;Parent=Physo137026;constitutive=1;ensembl_phase=2;rank=5 scaffold_50 . CDS 201293 201408 . - 0 ID=Physo137026;Parent=Physo137026;rank=4 scaffold_50 . exon 201293 201408 . - . ID=Physo137026.4;Parent=Physo137026;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_50 . CDS 201485 201701 . - 0 ID=Physo137026;Parent=Physo137026;rank=3 scaffold_50 . exon 201485 201701 . - . ID=Physo137026.3;Parent=Physo137026;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 201780 201953 . - 0 ID=Physo137026;Parent=Physo137026;rank=2 scaffold_50 . exon 201780 201953 . - . ID=Physo137026.2;Parent=Physo137026;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_50 . CDS 202039 202235 . - 0 ID=Physo137026;Parent=Physo137026;rank=1 scaffold_50 . exon 202039 202242 . - . ID=Physo137026.1;Parent=Physo137026;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_50 ensembl protein_coding_gene 202646 204413 . + . ID=Physo137027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500063;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 202646 204413 . + . ID=Physo137027;Parent=Physo137027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 202646 202801 . + 0 ID=Physo137027;Parent=Physo137027;rank=1 scaffold_50 . exon 202646 202801 . + . ID=Physo137027.1;Parent=Physo137027;constitutive=1;rank=1 scaffold_50 . CDS 202866 202961 . + 0 ID=Physo137027;Parent=Physo137027;rank=2 scaffold_50 . exon 202866 202961 . + . ID=Physo137027.2;Parent=Physo137027;constitutive=1;rank=2 scaffold_50 . CDS 203036 203157 . + 0 ID=Physo137027;Parent=Physo137027;rank=3 scaffold_50 . exon 203036 203157 . + . ID=Physo137027.3;Parent=Physo137027;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 203231 203402 . + 0 ID=Physo137027;Parent=Physo137027;rank=4 scaffold_50 . exon 203231 203402 . + . ID=Physo137027.4;Parent=Physo137027;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 203484 204413 . + 0 ID=Physo137027;Parent=Physo137027;rank=5 scaffold_50 . exon 203484 204413 . + . ID=Physo137027.5;Parent=Physo137027;constitutive=1;rank=5 scaffold_50 ensembl protein_coding_gene 205361 206287 . - . ID=Physo137028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500064;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 205361 206287 . - . ID=Physo137028;Parent=Physo137028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 205361 205503 . - 0 ID=Physo137028;Parent=Physo137028;rank=6 scaffold_50 . exon 205361 205503 . - . ID=Physo137028.6;Parent=Physo137028;constitutive=1;ensembl_phase=1;rank=6 scaffold_50 . CDS 205599 205644 . - 0 ID=Physo137028;Parent=Physo137028;rank=5 scaffold_50 . exon 205599 205644 . - . ID=Physo137028.5;Parent=Physo137028;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_50 . CDS 205712 205749 . - 0 ID=Physo137028;Parent=Physo137028;rank=4 scaffold_50 . exon 205712 205749 . - . ID=Physo137028.4;Parent=Physo137028;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 205831 205902 . - 0 ID=Physo137028;Parent=Physo137028;rank=3 scaffold_50 . exon 205831 205902 . - . ID=Physo137028.3;Parent=Physo137028;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 206005 206101 . - 0 ID=Physo137028;Parent=Physo137028;rank=2 scaffold_50 . exon 206005 206101 . - . ID=Physo137028.2;Parent=Physo137028;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_50 . CDS 206192 206287 . - 0 ID=Physo137028;Parent=Physo137028;rank=1 scaffold_50 . exon 206192 206287 . - . ID=Physo137028.1;Parent=Physo137028;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 206712 208968 . + . ID=Physo137029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500065;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 206712 208968 . + . ID=Physo137029;Parent=Physo137029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 206712 206763 . + 0 ID=Physo137029;Parent=Physo137029;rank=1 scaffold_50 . exon 206712 206763 . + . ID=Physo137029.1;Parent=Physo137029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 206784 207340 . + 0 ID=Physo137029;Parent=Physo137029;rank=2 scaffold_50 . exon 206784 207340 . + . ID=Physo137029.2;Parent=Physo137029;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 207420 207487 . + 0 ID=Physo137029;Parent=Physo137029;rank=3 scaffold_50 . CDS 207574 207962 . + 0 ID=Physo137029;Parent=Physo137029;rank=4 scaffold_50 . CDS 208036 208112 . + 0 ID=Physo137029;Parent=Physo137029;rank=5 scaffold_50 . CDS 208285 208883 . + 0 ID=Physo137029;Parent=Physo137029;rank=6 scaffold_50 . CDS 208938 208968 . + 0 ID=Physo137029;Parent=Physo137029;rank=7 scaffold_50 . exon 207420 207487 . + . ID=Physo137029.3;Parent=Physo137029;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . exon 207574 207962 . + . ID=Physo137029.4;Parent=Physo137029;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_50 . exon 208036 208112 . + . ID=Physo137029.5;Parent=Physo137029;constitutive=1;ensembl_phase=1;rank=5 scaffold_50 . exon 208285 208883 . + . ID=Physo137029.6;Parent=Physo137029;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_50 . exon 208938 208968 . + . ID=Physo137029.7;Parent=Physo137029;constitutive=1;ensembl_phase=2;rank=7 scaffold_50 ensembl protein_coding_gene 209130 209647 . - . ID=Physo137030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500066;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 209130 209647 . - . ID=Physo137030;Parent=Physo137030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 209130 209647 . - . ID=Physo137030.1;Parent=Physo137030;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 209239 209604 . - 0 ID=Physo137030;Parent=Physo137030;rank=1 scaffold_50 ensembl protein_coding_gene 209975 211184 . + . ID=Physo137031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500067;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 209975 211184 . + . ID=Physo137031;Parent=Physo137031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 209975 211067 . + 0 ID=Physo137031;Parent=Physo137031;rank=1 scaffold_50 . exon 209975 211067 . + . ID=Physo137031.1;Parent=Physo137031;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 211159 211184 . + 0 ID=Physo137031;Parent=Physo137031;rank=2 scaffold_50 . exon 211159 211184 . + . ID=Physo137031.2;Parent=Physo137031;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 ensembl protein_coding_gene 213681 217789 . - . ID=Physo137032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500068;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 213681 217789 . - . ID=Physo137032;Parent=Physo137032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 213681 217126 . - 0 ID=Physo137032;Parent=Physo137032;rank=4 scaffold_50 . exon 213681 217126 . - . ID=Physo137032.4;Parent=Physo137032;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 217203 217341 . - 0 ID=Physo137032;Parent=Physo137032;rank=3 scaffold_50 . exon 217203 217341 . - . ID=Physo137032.3;Parent=Physo137032;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . CDS 217421 217530 . - 0 ID=Physo137032;Parent=Physo137032;rank=2 scaffold_50 . CDS 217711 217789 . - 0 ID=Physo137032;Parent=Physo137032;rank=1 scaffold_50 . biological_region 218178 218179 0.999 - . logic_name=eponine scaffold_50 . biological_region 218233 218238 0.999 + . logic_name=eponine scaffold_50 . biological_region 218260 218262 0.999 + . logic_name=eponine scaffold_50 . biological_region 218303 218304 0.999 - . logic_name=eponine scaffold_50 . biological_region 219009 219014 0.999 - . logic_name=eponine scaffold_50 . biological_region 221128 221130 0.999 - . logic_name=eponine scaffold_50 . biological_region 221177 221182 0.999 - . logic_name=eponine scaffold_50 . biological_region 222170 222173 0.999 - . logic_name=eponine scaffold_50 . biological_region 222256 222259 0.999 + . logic_name=eponine scaffold_50 . biological_region 223142 223143 0.999 + . logic_name=eponine scaffold_50 . biological_region 224923 224923 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 217951 219768 . + . ID=Physo108995;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500008;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 217951 219768 . + . ID=Physo108995;Parent=Physo108995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 217951 218523 . + . ID=Physo108995.1;Parent=Physo108995;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_50 . CDS 217967 218523 . + 0 ID=Physo108995;Parent=Physo108995;rank=1 scaffold_50 . CDS 218605 218760 . + 0 ID=Physo108995;Parent=Physo108995;rank=2 scaffold_50 . exon 218605 218760 . + . ID=Physo108995.2;Parent=Physo108995;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_50 . CDS 218840 219665 . + 0 ID=Physo108995;Parent=Physo108995;rank=3 scaffold_50 . exon 218840 219768 . + . ID=Physo108995.3;Parent=Physo108995;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_50 . exon 217421 217530 . - . ID=Physo137032.2;Parent=Physo137032;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . exon 217711 217789 . - . ID=Physo137032.1;Parent=Physo137032;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 219805 220871 . + . ID=Physo137034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500070;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 219805 220871 . + . ID=Physo137034;Parent=Physo137034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 219805 220790 . + 0 ID=Physo137034;Parent=Physo137034;rank=1 scaffold_50 . exon 219805 220790 . + . ID=Physo137034.1;Parent=Physo137034;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 220838 220871 . + 0 ID=Physo137034;Parent=Physo137034;rank=2 scaffold_50 . exon 220838 220871 . + . ID=Physo137034.2;Parent=Physo137034;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 ensembl protein_coding_gene 221226 222083 . - . ID=Physo137035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500071;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 221226 222083 . - . ID=Physo137035;Parent=Physo137035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 221226 221519 . - 0 ID=Physo137035;Parent=Physo137035;rank=4 scaffold_50 . exon 221226 221519 . - . ID=Physo137035.4;Parent=Physo137035;constitutive=1;rank=4 scaffold_50 . CDS 221609 221734 . - 0 ID=Physo137035;Parent=Physo137035;rank=3 scaffold_50 . exon 221609 221734 . - . ID=Physo137035.3;Parent=Physo137035;constitutive=1;rank=3 scaffold_50 . CDS 221804 221889 . - 0 ID=Physo137035;Parent=Physo137035;rank=2 scaffold_50 . exon 221804 221889 . - . ID=Physo137035.2;Parent=Physo137035;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 221976 222057 . - 0 ID=Physo137035;Parent=Physo137035;rank=1 scaffold_50 . exon 221976 222083 . - . ID=Physo137035.1;Parent=Physo137035;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_50 ensembl protein_coding_gene 222249 223588 . + . ID=Physo137036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500072;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 222249 223588 . + . ID=Physo137036;Parent=Physo137036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 222249 222854 . + . ID=Physo137036.1;Parent=Physo137036;constitutive=1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 222288 222854 . + 0 ID=Physo137036;Parent=Physo137036;rank=1 scaffold_50 . CDS 222932 223588 . + 0 ID=Physo137036;Parent=Physo137036;rank=2 scaffold_50 . exon 222932 223588 . + . ID=Physo137036.2;Parent=Physo137036;constitutive=1;rank=2 scaffold_50 ensembl protein_coding_gene 224678 225302 . - . ID=Physo137037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500073;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 224678 225302 . - . ID=Physo137037;Parent=Physo137037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 224678 224786 . - 0 ID=Physo137037;Parent=Physo137037;rank=3 scaffold_50 . exon 224678 224786 . - . ID=Physo137037.3;Parent=Physo137037;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 224876 225151 . - 0 ID=Physo137037;Parent=Physo137037;rank=2 scaffold_50 . exon 224876 225151 . - . ID=Physo137037.2;Parent=Physo137037;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_50 . CDS 225241 225302 . - 0 ID=Physo137037;Parent=Physo137037;rank=1 scaffold_50 . exon 225241 225302 . - . ID=Physo137037.1;Parent=Physo137037;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 227023 229978 . + . ID=Physo137038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500074;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 227023 229978 . + . ID=Physo137038;Parent=Physo137038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 227023 227530 . + . ID=Physo137038.1;Parent=Physo137038;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_50 . CDS 227061 227530 . + 0 ID=Physo137038;Parent=Physo137038;rank=1 scaffold_50 . CDS 227970 228133 . + 0 ID=Physo137038;Parent=Physo137038;rank=2 scaffold_50 . CDS 228207 228409 . + 0 ID=Physo137038;Parent=Physo137038;rank=3 scaffold_50 . CDS 228485 228574 . + 0 ID=Physo137038;Parent=Physo137038;rank=4 scaffold_50 . CDS 228652 228885 . + 0 ID=Physo137038;Parent=Physo137038;rank=5 scaffold_50 . CDS 228955 229036 . + 0 ID=Physo137038;Parent=Physo137038;rank=6 scaffold_50 . CDS 229115 229359 . + 0 ID=Physo137038;Parent=Physo137038;rank=7 scaffold_50 . CDS 229387 229404 . + 0 ID=Physo137038;Parent=Physo137038;rank=8 scaffold_50 . CDS 229524 229668 . + 0 ID=Physo137038;Parent=Physo137038;rank=9 scaffold_50 . CDS 229756 229922 . + 0 ID=Physo137038;Parent=Physo137038;rank=10 scaffold_50 . repeat_region 227533 227556 . ? . description=dust scaffold_50 . repeat_region 233044 233064 . ? . description=dust scaffold_50 . exon 227970 228133 . + . ID=Physo137038.2;Parent=Physo137038;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . exon 228207 228409 . + . ID=Physo137038.3;Parent=Physo137038;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . exon 228485 228574 . + . ID=Physo137038.4;Parent=Physo137038;constitutive=1;rank=4 scaffold_50 . exon 228652 228885 . + . ID=Physo137038.5;Parent=Physo137038;constitutive=1;rank=5 scaffold_50 . exon 228955 229036 . + . ID=Physo137038.6;Parent=Physo137038;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_50 . exon 229115 229359 . + . ID=Physo137038.7;Parent=Physo137038;constitutive=1;ensembl_phase=1;rank=7 scaffold_50 . exon 229387 229404 . + . ID=Physo137038.8;Parent=Physo137038;constitutive=1;rank=8 scaffold_50 . exon 229524 229668 . + . ID=Physo137038.9;Parent=Physo137038;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_50 . exon 229756 229978 . + . ID=Physo137038.10;Parent=Physo137038;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=10 scaffold_50 ensembl protein_coding_gene 230029 234876 . - . ID=Physo137039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500075;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 230029 234876 . - . ID=Physo137039;Parent=Physo137039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 230029 232435 . - 0 ID=Physo137039;Parent=Physo137039;rank=4 scaffold_50 . exon 230029 232435 . - . ID=Physo137039.4;Parent=Physo137039;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 232520 232687 . - 0 ID=Physo137039;Parent=Physo137039;rank=3 scaffold_50 . exon 232520 232687 . - . ID=Physo137039.3;Parent=Physo137039;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_50 . CDS 232760 232987 . - 0 ID=Physo137039;Parent=Physo137039;rank=2 scaffold_50 . exon 232760 232987 . - . ID=Physo137039.2;Parent=Physo137039;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_50 . CDS 233213 234876 . - 0 ID=Physo137039;Parent=Physo137039;rank=1 scaffold_50 . exon 233213 234876 . - . ID=Physo137039.1;Parent=Physo137039;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 235697 238389 . + . ID=Physo137040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500076;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 235697 238389 . + . ID=Physo137040;Parent=Physo137040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 235697 236140 . + 0 ID=Physo137040;Parent=Physo137040;rank=1 scaffold_50 . exon 235697 236140 . + . ID=Physo137040.1;Parent=Physo137040;constitutive=1;rank=1 scaffold_50 . CDS 236240 236410 . + 0 ID=Physo137040;Parent=Physo137040;rank=2 scaffold_50 . exon 236240 236410 . + . ID=Physo137040.2;Parent=Physo137040;constitutive=1;rank=2 scaffold_50 . CDS 236687 236863 . + 0 ID=Physo137040;Parent=Physo137040;rank=3 scaffold_50 . exon 236687 236863 . + . ID=Physo137040.3;Parent=Physo137040;constitutive=1;rank=3 scaffold_50 . CDS 237157 237307 . + 0 ID=Physo137040;Parent=Physo137040;rank=4 scaffold_50 . CDS 237350 237557 . + 0 ID=Physo137040;Parent=Physo137040;rank=5 scaffold_50 . CDS 237633 238389 . + 0 ID=Physo137040;Parent=Physo137040;rank=6 scaffold_50 . biological_region 239228 239233 0.999 + . logic_name=eponine scaffold_50 . biological_region 239476 239478 0.999 - . logic_name=eponine scaffold_50 . biological_region 242575 242576 0.999 - . logic_name=eponine scaffold_50 . biological_region 242627 242627 0.999 - . logic_name=eponine scaffold_50 . repeat_region 244488 244522 . ? . description=trf scaffold_50 ensembl protein_coding_gene 244022 245974 . - . ID=Physo118268;biotype=protein_coding;external_name=estExt_Genewise1.C_500126;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 244022 245974 . - . ID=Physo118268;Parent=Physo118268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 244022 244431 . - 0 ID=Physo118268;Parent=Physo118268;rank=4 scaffold_50 . exon 244022 244431 . - . ID=Physo118268.4;Parent=Physo118268;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 . CDS 244492 244705 . - 0 ID=Physo118268;Parent=Physo118268;rank=3 scaffold_50 . exon 244492 244705 . - . ID=Physo118268.3;Parent=Physo118268;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . CDS 244781 244933 . - 0 ID=Physo118268;Parent=Physo118268;rank=2 scaffold_50 . exon 244781 244933 . - . ID=Physo118268.2;Parent=Physo118268;constitutive=1;rank=2 scaffold_50 . CDS 245003 245902 . - 0 ID=Physo118268;Parent=Physo118268;rank=1 scaffold_50 . exon 245003 245974 . - . ID=Physo118268.1;Parent=Physo118268;constitutive=1;ensembl_phase=-1;rank=1 scaffold_50 . exon 237157 237307 . + . ID=Physo137040.4;Parent=Physo137040;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_50 . exon 237350 237557 . + . ID=Physo137040.5;Parent=Physo137040;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_50 . exon 237633 238389 . + . ID=Physo137040.6;Parent=Physo137040;constitutive=1;ensembl_phase=2;rank=6 scaffold_50 ensembl protein_coding_gene 238518 243116 . - . ID=Physo137041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500077;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 238518 243116 . - . ID=Physo137041;Parent=Physo137041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 238518 243116 . - 0 ID=Physo137041;Parent=Physo137041;rank=1 scaffold_50 . exon 238518 243116 . - . ID=Physo137041.1;Parent=Physo137041;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 246487 247089 . + . ID=Physo137043;biotype=protein_coding;description=Elicitin-like protein SOL1E [Source:UniProtKB/TrEMBL%3BAcc:Q2N059];external_name=estExt_fgenesh1_pg.C_500079;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 246487 247089 . + . ID=Physo137043;Parent=Physo137043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 246487 247089 . + 0 ID=Physo137043;Parent=Physo137043;rank=1 scaffold_50 . exon 246487 247089 . + . ID=Physo137043.1;Parent=Physo137043;constitutive=1;rank=1 scaffold_50 . repeat_region 247121 247129 . ? . description=dust scaffold_50 . repeat_region 256634 256641 . ? . description=dust scaffold_50 ensembl protein_coding_gene 247293 248564 . - . ID=Physo137044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500080;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 247293 248564 . - . ID=Physo137044;Parent=Physo137044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 247293 247570 . - . ID=Physo137044.4;Parent=Physo137044;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_50 . CDS 247343 247570 . - 0 ID=Physo137044;Parent=Physo137044;rank=4 scaffold_50 . CDS 247654 248169 . - 0 ID=Physo137044;Parent=Physo137044;rank=3 scaffold_50 . exon 247654 248169 . - . ID=Physo137044.3;Parent=Physo137044;constitutive=1;rank=3 scaffold_50 . CDS 248244 248312 . - 0 ID=Physo137044;Parent=Physo137044;rank=2 scaffold_50 . exon 248244 248312 . - . ID=Physo137044.2;Parent=Physo137044;constitutive=1;rank=2 scaffold_50 . CDS 248400 248564 . - 0 ID=Physo137044;Parent=Physo137044;rank=1 scaffold_50 . exon 248400 248564 . - . ID=Physo137044.1;Parent=Physo137044;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 248929 255006 . + . ID=Physo137045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500081;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 248929 255006 . + . ID=Physo137045;Parent=Physo137045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 248929 249804 . + 0 ID=Physo137045;Parent=Physo137045;rank=1 scaffold_50 . exon 248929 249804 . + . ID=Physo137045.1;Parent=Physo137045;constitutive=1;rank=1 scaffold_50 . CDS 249880 249910 . + 0 ID=Physo137045;Parent=Physo137045;rank=2 scaffold_50 . exon 249880 249910 . + . ID=Physo137045.2;Parent=Physo137045;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_50 . CDS 250178 255006 . + 0 ID=Physo137045;Parent=Physo137045;rank=3 scaffold_50 . exon 250178 255006 . + . ID=Physo137045.3;Parent=Physo137045;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 ensembl protein_coding_gene 255220 256514 . + . ID=Physo137046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500082;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 255220 256514 . + . ID=Physo137046;Parent=Physo137046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 255220 255451 . + 0 ID=Physo137046;Parent=Physo137046;rank=1 scaffold_50 . exon 255220 255451 . + . ID=Physo137046.1;Parent=Physo137046;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 255534 255835 . + 0 ID=Physo137046;Parent=Physo137046;rank=2 scaffold_50 . exon 255534 255835 . + . ID=Physo137046.2;Parent=Physo137046;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 255913 256158 . + 0 ID=Physo137046;Parent=Physo137046;rank=3 scaffold_50 . exon 255913 256158 . + . ID=Physo137046.3;Parent=Physo137046;constitutive=1;rank=3 scaffold_50 . CDS 256243 256324 . + 0 ID=Physo137046;Parent=Physo137046;rank=4 scaffold_50 . exon 256243 256324 . + . ID=Physo137046.4;Parent=Physo137046;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_50 . CDS 256390 256514 . + 0 ID=Physo137046;Parent=Physo137046;rank=5 scaffold_50 . exon 256390 256514 . + . ID=Physo137046.5;Parent=Physo137046;constitutive=1;ensembl_phase=1;rank=5 scaffold_50 . repeat_region 264260 264433 . ? . description=trf scaffold_50 . biological_region 266286 266289 0.999 - . logic_name=eponine scaffold_50 . biological_region 266502 266508 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 259492 260340 . + . ID=Physo137047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500083;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 259492 260340 . + . ID=Physo137047;Parent=Physo137047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 259492 260340 . + 0 ID=Physo137047;Parent=Physo137047;rank=1 scaffold_50 . exon 259492 260340 . + . ID=Physo137047.1;Parent=Physo137047;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 261348 262467 . - . ID=Physo137048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500084;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 261348 262467 . - . ID=Physo137048;Parent=Physo137048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 261348 261356 . - 0 ID=Physo137048;Parent=Physo137048;rank=2 scaffold_50 . exon 261348 261356 . - . ID=Physo137048.2;Parent=Physo137048;constitutive=1;rank=2 scaffold_50 . CDS 261427 262467 . - 0 ID=Physo137048;Parent=Physo137048;rank=1 scaffold_50 . exon 261427 262467 . - . ID=Physo137048.1;Parent=Physo137048;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 265697 267394 . + . ID=Physo137049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500085;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 265697 267394 . + . ID=Physo137049;Parent=Physo137049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 265697 265719 . + 0 ID=Physo137049;Parent=Physo137049;rank=1 scaffold_50 . exon 265697 265719 . + . ID=Physo137049.1;Parent=Physo137049;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 265845 267012 . + 0 ID=Physo137049;Parent=Physo137049;rank=2 scaffold_50 . exon 265845 267012 . + . ID=Physo137049.2;Parent=Physo137049;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 267098 267394 . + 0 ID=Physo137049;Parent=Physo137049;rank=3 scaffold_50 . repeat_region 269495 269602 . + . description=(CTG)n scaffold_50 . repeat_region 269507 269567 . ? . description=dust scaffold_50 . repeat_region 274648 274665 . ? . description=dust scaffold_50 . exon 267098 267394 . + . ID=Physo137049.3;Parent=Physo137049;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 267556 269280 . - . ID=Physo137050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500086;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 267556 269280 . - . ID=Physo137050;Parent=Physo137050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 267556 269280 . - 0 ID=Physo137050;Parent=Physo137050;rank=1 scaffold_50 . exon 267556 269280 . - . ID=Physo137050.1;Parent=Physo137050;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 269798 270361 . + . ID=Physo137051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500087;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 269798 270361 . + . ID=Physo137051;Parent=Physo137051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 269798 270361 . + 0 ID=Physo137051;Parent=Physo137051;rank=1 scaffold_50 . exon 269798 270361 . + . ID=Physo137051.1;Parent=Physo137051;constitutive=1;rank=1 scaffold_50 . repeat_region 279327 279346 . ? . description=trf scaffold_50 . biological_region 279815 279815 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 281164 281808 . + . ID=Physo137052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500088;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 281164 281808 . + . ID=Physo137052;Parent=Physo137052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 281164 281808 . + 0 ID=Physo137052;Parent=Physo137052;rank=1 scaffold_50 . exon 281164 281808 . + . ID=Physo137052.1;Parent=Physo137052;constitutive=1;rank=1 scaffold_50 . repeat_region 292234 292254 . ? . description=dust scaffold_50 ensembl protein_coding_gene 292881 295373 . - . ID=Physo137053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500089;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 292881 295373 . - . ID=Physo137053;Parent=Physo137053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 292881 294935 . - . ID=Physo137053.3;Parent=Physo137053;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_50 . CDS 292920 294935 . - 0 ID=Physo137053;Parent=Physo137053;rank=3 scaffold_50 . CDS 295017 295212 . - 0 ID=Physo137053;Parent=Physo137053;rank=2 scaffold_50 . exon 295017 295212 . - . ID=Physo137053.2;Parent=Physo137053;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 295279 295373 . - 0 ID=Physo137053;Parent=Physo137053;rank=1 scaffold_50 . exon 295279 295373 . - . ID=Physo137053.1;Parent=Physo137053;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 295724 296686 . + . ID=Physo137054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500090;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 295724 296686 . + . ID=Physo137054;Parent=Physo137054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 295724 296030 . + 0 ID=Physo137054;Parent=Physo137054;rank=1 scaffold_50 . exon 295724 296030 . + . ID=Physo137054.1;Parent=Physo137054;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 296137 296457 . + 0 ID=Physo137054;Parent=Physo137054;rank=2 scaffold_50 . exon 296137 296457 . + . ID=Physo137054.2;Parent=Physo137054;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 296491 296622 . + 0 ID=Physo137054;Parent=Physo137054;rank=3 scaffold_50 . CDS 296682 296686 . + 0 ID=Physo137054;Parent=Physo137054;rank=4 scaffold_50 . biological_region 298307 298310 0.999 - . logic_name=eponine scaffold_50 . biological_region 298360 298365 0.999 + . logic_name=eponine scaffold_50 . biological_region 298404 298406 0.999 - . logic_name=eponine scaffold_50 . biological_region 298630 298632 0.999 + . logic_name=eponine scaffold_50 . biological_region 298734 298735 0.999 + . logic_name=eponine scaffold_50 . biological_region 299902 299905 0.999 + . logic_name=eponine scaffold_50 . biological_region 300253 300256 0.999 - . logic_name=eponine scaffold_50 . biological_region 302453 302457 0.999 + . logic_name=eponine scaffold_50 . biological_region 303624 303625 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 297187 299216 . - . ID=Physo108996;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500009;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 297187 299216 . - . ID=Physo108996;Parent=Physo108996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 297187 298929 . - 0 ID=Physo108996;Parent=Physo108996;rank=3 scaffold_50 . exon 297187 298929 . - . ID=Physo108996.3;Parent=Physo108996;constitutive=1;rank=3 scaffold_50 . CDS 299014 299057 . - 0 ID=Physo108996;Parent=Physo108996;rank=2 scaffold_50 . exon 299014 299057 . - . ID=Physo108996.2;Parent=Physo108996;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 299147 299216 . - 0 ID=Physo108996;Parent=Physo108996;rank=1 scaffold_50 . exon 299147 299216 . - . ID=Physo108996.1;Parent=Physo108996;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . exon 296491 296622 . + . ID=Physo137054.3;Parent=Physo137054;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_50 . exon 296682 296686 . + . ID=Physo137054.4;Parent=Physo137054;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 ensembl protein_coding_gene 299539 301109 . + . ID=Physo137056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500092;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 299539 301109 . + . ID=Physo137056;Parent=Physo137056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 299539 299745 . + 0 ID=Physo137056;Parent=Physo137056;rank=1 scaffold_50 . exon 299539 299745 . + . ID=Physo137056.1;Parent=Physo137056;constitutive=1;rank=1 scaffold_50 . CDS 299832 301109 . + 0 ID=Physo137056;Parent=Physo137056;rank=2 scaffold_50 . exon 299832 301109 . + . ID=Physo137056.2;Parent=Physo137056;constitutive=1;rank=2 scaffold_50 ensembl protein_coding_gene 301269 302897 . + . ID=Physo137057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500093;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 301269 302897 . + . ID=Physo137057;Parent=Physo137057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 301269 302897 . + 0 ID=Physo137057;Parent=Physo137057;rank=1 scaffold_50 . exon 301269 302897 . + . ID=Physo137057.1;Parent=Physo137057;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 305582 306166 . + . ID=Physo137058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500094;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 305582 306166 . + . ID=Physo137058;Parent=Physo137058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 305582 306166 . + 0 ID=Physo137058;Parent=Physo137058;rank=1 scaffold_50 . exon 305582 306166 . + . ID=Physo137058.1;Parent=Physo137058;constitutive=1;rank=1 scaffold_50 . repeat_region 307615 308529 . + . description=Gypsy-2-I_PI-int scaffold_50 ensembl protein_coding_gene 311132 312687 . - . ID=Physo137059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500095;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 311132 312687 . - . ID=Physo137059;Parent=Physo137059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 311132 311179 . - 0 ID=Physo137059;Parent=Physo137059;rank=7 scaffold_50 . exon 311132 311179 . - . ID=Physo137059.7;Parent=Physo137059;constitutive=1;rank=7 scaffold_50 . CDS 311329 311528 . - 0 ID=Physo137059;Parent=Physo137059;rank=6 scaffold_50 . exon 311329 311528 . - . ID=Physo137059.6;Parent=Physo137059;constitutive=1;ensembl_phase=1;rank=6 scaffold_50 . CDS 311618 311829 . - 0 ID=Physo137059;Parent=Physo137059;rank=5 scaffold_50 . exon 311618 311829 . - . ID=Physo137059.5;Parent=Physo137059;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_50 . CDS 311983 312109 . - 0 ID=Physo137059;Parent=Physo137059;rank=4 scaffold_50 . exon 311983 312109 . - . ID=Physo137059.4;Parent=Physo137059;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_50 . CDS 312179 312271 . - 0 ID=Physo137059;Parent=Physo137059;rank=3 scaffold_50 . exon 312179 312271 . - . ID=Physo137059.3;Parent=Physo137059;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 312355 312476 . - 0 ID=Physo137059;Parent=Physo137059;rank=2 scaffold_50 . exon 312355 312476 . - . ID=Physo137059.2;Parent=Physo137059;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 312551 312687 . - 0 ID=Physo137059;Parent=Physo137059;rank=1 scaffold_50 . exon 312551 312687 . - . ID=Physo137059.1;Parent=Physo137059;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 313435 318567 . + . ID=Physo137060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500096;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 313435 318567 . + . ID=Physo137060;Parent=Physo137060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 313435 313701 . + 0 ID=Physo137060;Parent=Physo137060;rank=1 scaffold_50 . exon 313435 313701 . + . ID=Physo137060.1;Parent=Physo137060;constitutive=1;rank=1 scaffold_50 . CDS 313798 314501 . + 0 ID=Physo137060;Parent=Physo137060;rank=2 scaffold_50 . exon 313798 314501 . + . ID=Physo137060.2;Parent=Physo137060;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_50 . CDS 314546 315208 . + 0 ID=Physo137060;Parent=Physo137060;rank=3 scaffold_50 . exon 314546 315208 . + . ID=Physo137060.3;Parent=Physo137060;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_50 . CDS 315457 315825 . + 0 ID=Physo137060;Parent=Physo137060;rank=4 scaffold_50 . exon 315457 315825 . + . ID=Physo137060.4;Parent=Physo137060;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_50 . CDS 316214 317376 . + 0 ID=Physo137060;Parent=Physo137060;rank=5 scaffold_50 . CDS 317737 317918 . + 0 ID=Physo137060;Parent=Physo137060;rank=6 scaffold_50 . CDS 318415 318567 . + 0 ID=Physo137060;Parent=Physo137060;rank=7 scaffold_50 . repeat_region 317742 317840 . ? . description=trf scaffold_50 . repeat_region 317760 317840 . ? . description=trf scaffold_50 . repeat_region 318632 318671 . ? . description=trf scaffold_50 . repeat_region 323963 323993 . ? . description=trf scaffold_50 . repeat_region 323970 324073 . ? . description=trf scaffold_50 . biological_region 324435 324439 0.999 - . logic_name=eponine scaffold_50 . biological_region 324492 324493 0.999 + . logic_name=eponine scaffold_50 . repeat_region 324791 324813 . ? . description=dust scaffold_50 ensembl protein_coding_gene 321203 322135 . - . ID=Physo118156;biotype=protein_coding;external_name=estExt_Genewise1.C_500014;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 321203 322135 . - . ID=Physo118156;Parent=Physo118156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 321203 321355 . - 0 ID=Physo118156;Parent=Physo118156;rank=5 scaffold_50 . exon 321203 321355 . - . ID=Physo118156.6;Parent=Physo118156;constitutive=1;rank=6 scaffold_50 . CDS 321434 321613 . - 0 ID=Physo118156;Parent=Physo118156;rank=4 scaffold_50 . exon 321434 321613 . - . ID=Physo118156.5;Parent=Physo118156;constitutive=1;rank=5 scaffold_50 . CDS 321684 321735 . - 0 ID=Physo118156;Parent=Physo118156;rank=3 scaffold_50 . exon 321684 321735 . - . ID=Physo118156.4;Parent=Physo118156;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 321818 321871 . - 0 ID=Physo118156;Parent=Physo118156;rank=2 scaffold_50 . exon 321818 321871 . - . ID=Physo118156.3;Parent=Physo118156;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_50 . CDS 321957 322018 . - 0 ID=Physo118156;Parent=Physo118156;rank=1 scaffold_50 . exon 321957 322030 . - . ID=Physo118156.2;Parent=Physo118156;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_50 . exon 322097 322135 . - . ID=Physo118156.1;Parent=Physo118156;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 . exon 316214 317376 . + . ID=Physo137060.5;Parent=Physo137060;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_50 . exon 317737 317918 . + . ID=Physo137060.6;Parent=Physo137060;constitutive=1;ensembl_phase=1;rank=6 scaffold_50 . exon 318415 318567 . + . ID=Physo137060.7;Parent=Physo137060;constitutive=1;rank=7 scaffold_50 ensembl protein_coding_gene 323104 323517 . - . ID=Physo137062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500098;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 323104 323517 . - . ID=Physo137062;Parent=Physo137062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 323104 323517 . - 0 ID=Physo137062;Parent=Physo137062;rank=1 scaffold_50 . exon 323104 323517 . - . ID=Physo137062.1;Parent=Physo137062;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 324821 327127 . + . ID=Physo137063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500099;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 324821 327127 . + . ID=Physo137063;Parent=Physo137063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 324821 324980 . + 0 ID=Physo137063;Parent=Physo137063;rank=1 scaffold_50 . exon 324821 324980 . + . ID=Physo137063.1;Parent=Physo137063;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 325083 325858 . + 0 ID=Physo137063;Parent=Physo137063;rank=2 scaffold_50 . exon 325083 325858 . + . ID=Physo137063.2;Parent=Physo137063;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 326114 326465 . + 0 ID=Physo137063;Parent=Physo137063;rank=3 scaffold_50 . CDS 326574 327127 . + 0 ID=Physo137063;Parent=Physo137063;rank=4 scaffold_50 . exon 326114 326465 . + . ID=Physo137063.3;Parent=Physo137063;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_50 . exon 326574 327127 . + . ID=Physo137063.4;Parent=Physo137063;constitutive=1;ensembl_phase=1;rank=4 scaffold_50 ensembl protein_coding_gene 329419 332337 . + . ID=Physo137064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500100;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 329419 332337 . + . ID=Physo137064;Parent=Physo137064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 329419 332337 . + 0 ID=Physo137064;Parent=Physo137064;rank=1 scaffold_50 . exon 329419 332337 . + . ID=Physo137064.1;Parent=Physo137064;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 333443 337896 . - . ID=Physo137065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500101;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 333443 337896 . - . ID=Physo137065;Parent=Physo137065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 333443 334961 . - 0 ID=Physo137065;Parent=Physo137065;rank=5 scaffold_50 . exon 333443 334961 . - . ID=Physo137065.5;Parent=Physo137065;constitutive=1;ensembl_phase=2;rank=5 scaffold_50 . CDS 334989 337246 . - 0 ID=Physo137065;Parent=Physo137065;rank=4 scaffold_50 . exon 334989 337246 . - . ID=Physo137065.4;Parent=Physo137065;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_50 . CDS 337370 337498 . - 0 ID=Physo137065;Parent=Physo137065;rank=3 scaffold_50 . CDS 337536 337796 . - 0 ID=Physo137065;Parent=Physo137065;rank=2 scaffold_50 . CDS 337864 337896 . - 0 ID=Physo137065;Parent=Physo137065;rank=1 scaffold_50 . biological_region 335807 335811 0.999 - . logic_name=eponine scaffold_50 . biological_region 336932 336934 0.999 + . logic_name=eponine scaffold_50 . biological_region 337444 337449 0.999 + . logic_name=eponine scaffold_50 . repeat_region 338070 338100 . ? . description=trf scaffold_50 . repeat_region 338077 338180 . ? . description=trf scaffold_50 . biological_region 338543 338545 0.999 - . logic_name=eponine scaffold_50 . biological_region 338599 338600 0.999 + . logic_name=eponine scaffold_50 . repeat_region 340010 340030 . ? . description=trf scaffold_50 . repeat_region 341748 341793 . ? . description=trf scaffold_50 . biological_region 341953 341955 0.999 - . logic_name=eponine scaffold_50 . biological_region 342463 342468 0.999 + . logic_name=eponine scaffold_50 . biological_region 343437 343438 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 344625 347306 . + . ID=Physo108997;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500010;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 344625 347306 . + . ID=Physo108997;Parent=Physo108997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 344625 345104 . + 0 ID=Physo108997;Parent=Physo108997;rank=1 scaffold_50 . exon 344625 345104 . + . ID=Physo108997.1;Parent=Physo108997;constitutive=1;rank=1 scaffold_50 . CDS 345171 345488 . + 0 ID=Physo108997;Parent=Physo108997;rank=2 scaffold_50 . exon 345171 345488 . + . ID=Physo108997.2;Parent=Physo108997;constitutive=1;rank=2 scaffold_50 . CDS 345523 345621 . + 0 ID=Physo108997;Parent=Physo108997;rank=3 scaffold_50 . exon 345523 345621 . + . ID=Physo108997.3;Parent=Physo108997;constitutive=1;rank=3 scaffold_50 . CDS 346133 346731 . + 0 ID=Physo108997;Parent=Physo108997;rank=4 scaffold_50 . CDS 347294 347306 . + 0 ID=Physo108997;Parent=Physo108997;rank=5 scaffold_50 . exon 337370 337498 . - . ID=Physo137065.3;Parent=Physo137065;constitutive=1;rank=3 scaffold_50 . exon 337536 337796 . - . ID=Physo137065.2;Parent=Physo137065;constitutive=1;rank=2 scaffold_50 . exon 337864 337896 . - . ID=Physo137065.1;Parent=Physo137065;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 338438 340212 . - . ID=Physo137066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500102;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 338438 340212 . - . ID=Physo137066;Parent=Physo137066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 338438 338769 . - 0 ID=Physo137066;Parent=Physo137066;rank=3 scaffold_50 . exon 338438 338769 . - . ID=Physo137066.3;Parent=Physo137066;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 338829 339878 . - 0 ID=Physo137066;Parent=Physo137066;rank=2 scaffold_50 . exon 338829 339878 . - . ID=Physo137066.2;Parent=Physo137066;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 340146 340212 . - 0 ID=Physo137066;Parent=Physo137066;rank=1 scaffold_50 . exon 340146 340212 . - . ID=Physo137066.1;Parent=Physo137066;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 ensembl protein_coding_gene 341612 344516 . + . ID=Physo137067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500103;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 341612 344516 . + . ID=Physo137067;Parent=Physo137067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 341612 341627 . + 0 ID=Physo137067;Parent=Physo137067;rank=1 scaffold_50 . exon 341612 341627 . + . ID=Physo137067.1;Parent=Physo137067;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 341721 341928 . + 0 ID=Physo137067;Parent=Physo137067;rank=2 scaffold_50 . exon 341721 341928 . + . ID=Physo137067.2;Parent=Physo137067;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_50 . CDS 342455 342500 . + 0 ID=Physo137067;Parent=Physo137067;rank=3 scaffold_50 . exon 342455 342500 . + . ID=Physo137067.3;Parent=Physo137067;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 342621 344516 . + 0 ID=Physo137067;Parent=Physo137067;rank=4 scaffold_50 . exon 342621 344516 . + . ID=Physo137067.4;Parent=Physo137067;constitutive=1;rank=4 scaffold_50 . repeat_region 346385 346770 . + . description=Gypsy-2-I_PI-int scaffold_50 . exon 346133 346731 . + . ID=Physo108997.4;Parent=Physo108997;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_50 . exon 347294 347306 . + . ID=Physo108997.5;Parent=Physo108997;constitutive=1;ensembl_phase=2;rank=5 scaffold_50 ensembl protein_coding_gene 348805 350569 . - . ID=Physo137069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500105;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 348805 350569 . - . ID=Physo137069;Parent=Physo137069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 348805 350310 . - . ID=Physo137069.2;Parent=Physo137069;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_50 . CDS 348840 350310 . - 0 ID=Physo137069;Parent=Physo137069;rank=2 scaffold_50 . CDS 350379 350569 . - 0 ID=Physo137069;Parent=Physo137069;rank=1 scaffold_50 . exon 350379 350569 . - . ID=Physo137069.1;Parent=Physo137069;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 351016 351915 . - . ID=Physo137070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500106;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 351016 351915 . - . ID=Physo137070;Parent=Physo137070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 351016 351915 . - 0 ID=Physo137070;Parent=Physo137070;rank=1 scaffold_50 . exon 351016 351915 . - . ID=Physo137070.1;Parent=Physo137070;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 352229 354559 . + . ID=Physo137071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500107;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 352229 354559 . + . ID=Physo137071;Parent=Physo137071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 352229 354559 . + 0 ID=Physo137071;Parent=Physo137071;rank=1 scaffold_50 . exon 352229 354559 . + . ID=Physo137071.1;Parent=Physo137071;constitutive=1;rank=1 scaffold_50 . biological_region 356178 356180 0.999 + . logic_name=eponine scaffold_50 . biological_region 362006 362007 0.999 - . logic_name=eponine scaffold_50 . biological_region 362107 362112 0.999 - . logic_name=eponine scaffold_50 . biological_region 362868 362872 0.999 - . logic_name=eponine scaffold_50 . biological_region 364372 364373 0.999 + . logic_name=eponine scaffold_50 . biological_region 364407 364409 0.999 + . logic_name=eponine scaffold_50 . biological_region 364784 364788 0.999 - . logic_name=eponine scaffold_50 . biological_region 364839 364844 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 356789 357094 . + . ID=Physo137072;biotype=protein_coding;description=PsAvh243 [Source:UniProtKB/TrEMBL%3BAcc:E0W586];external_name=estExt_fgenesh1_pg.C_500108;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 356789 357094 . + . ID=Physo137072;Parent=Physo137072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 356789 357094 . + 0 ID=Physo137072;Parent=Physo137072;rank=1 scaffold_50 . exon 356789 357094 . + . ID=Physo137072.1;Parent=Physo137072;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 357107 357909 . - . ID=Physo137073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500109;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 357107 357909 . - . ID=Physo137073;Parent=Physo137073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 357107 357909 . - . ID=Physo137073.1;Parent=Physo137073;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 357294 357881 . - 0 ID=Physo137073;Parent=Physo137073;rank=1 scaffold_50 ensembl protein_coding_gene 359787 391559 . - . ID=Physo137074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500110;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 359787 391559 . - . ID=Physo137074;Parent=Physo137074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 359787 391559 . - 0 ID=Physo137074;Parent=Physo137074;rank=1 scaffold_50 . exon 359787 391559 . - . ID=Physo137074.1;Parent=Physo137074;constitutive=1;rank=1 scaffold_50 . biological_region 375758 375760 0.999 + . logic_name=eponine scaffold_50 . biological_region 382306 382306 0.999 - . logic_name=eponine scaffold_50 . biological_region 382329 382333 0.999 - . logic_name=eponine scaffold_50 . biological_region 382383 382389 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 359787 391559 . - . ID=Physo137074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500110;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 359787 391559 . - . ID=Physo137074;Parent=Physo137074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 359787 391559 . - 0 ID=Physo137074;Parent=Physo137074;rank=1 scaffold_50 . exon 359787 391559 . - . ID=Physo137074.1;Parent=Physo137074;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 393512 394862 . - . ID=Physo137075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500111;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 393512 394862 . - . ID=Physo137075;Parent=Physo137075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 393512 393979 . - 0 ID=Physo137075;Parent=Physo137075;rank=3 scaffold_50 . exon 393512 393979 . - . ID=Physo137075.3;Parent=Physo137075;constitutive=1;rank=3 scaffold_50 . CDS 394054 394530 . - 0 ID=Physo137075;Parent=Physo137075;rank=2 scaffold_50 . exon 394054 394530 . - . ID=Physo137075.2;Parent=Physo137075;constitutive=1;rank=2 scaffold_50 . CDS 394629 394856 . - 0 ID=Physo137075;Parent=Physo137075;rank=1 scaffold_50 . exon 394629 394862 . - . ID=Physo137075.1;Parent=Physo137075;constitutive=1;ensembl_phase=-1;rank=1 scaffold_50 . biological_region 396184 396188 0.999 + . logic_name=eponine scaffold_50 . biological_region 396244 396248 0.999 + . logic_name=eponine scaffold_50 . biological_region 397045 397047 0.999 + . logic_name=eponine scaffold_50 . repeat_region 397443 397466 . ? . description=trf scaffold_50 . biological_region 398122 398124 0.999 + . logic_name=eponine scaffold_50 . biological_region 398142 398145 0.999 + . logic_name=eponine scaffold_50 . biological_region 398296 398297 0.999 + . logic_name=eponine scaffold_50 . biological_region 399150 399154 0.999 - . logic_name=eponine scaffold_50 . biological_region 400167 400167 0.999 - . logic_name=eponine scaffold_50 . biological_region 400816 400818 0.999 + . logic_name=eponine scaffold_50 . biological_region 400875 400876 0.999 - . logic_name=eponine scaffold_50 . biological_region 400955 400956 0.999 - . logic_name=eponine scaffold_50 . biological_region 401019 401023 0.999 - . logic_name=eponine scaffold_50 . biological_region 401039 401040 0.999 - . logic_name=eponine scaffold_50 . biological_region 402106 402106 0.999 + . logic_name=eponine scaffold_50 . biological_region 402170 402171 0.999 + . logic_name=eponine scaffold_50 . biological_region 402561 402566 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 403273 405155 . + . ID=Physo108998;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500011;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 403273 405155 . + . ID=Physo108998;Parent=Physo108998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 403273 404831 . + 0 ID=Physo108998;Parent=Physo108998;rank=1 scaffold_50 . exon 403273 404831 . + . ID=Physo108998.1;Parent=Physo108998;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 404897 405155 . + 0 ID=Physo108998;Parent=Physo108998;rank=2 scaffold_50 ensembl protein_coding_gene 395069 396636 . + . ID=Physo137076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500112;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 395069 396636 . + . ID=Physo137076;Parent=Physo137076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 395069 395539 . + 0 ID=Physo137076;Parent=Physo137076;rank=1 scaffold_50 . exon 395069 395539 . + . ID=Physo137076.1;Parent=Physo137076;constitutive=1;rank=1 scaffold_50 . CDS 395583 395602 . + 0 ID=Physo137076;Parent=Physo137076;rank=2 scaffold_50 . exon 395583 395602 . + . ID=Physo137076.2;Parent=Physo137076;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_50 . CDS 395670 396636 . + 0 ID=Physo137076;Parent=Physo137076;rank=3 scaffold_50 . exon 395670 396636 . + . ID=Physo137076.3;Parent=Physo137076;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 ensembl protein_coding_gene 396696 397703 . - . ID=Physo137077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500113;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 396696 397703 . - . ID=Physo137077;Parent=Physo137077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 396696 397319 . - . ID=Physo137077.2;Parent=Physo137077;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_50 . CDS 396901 397239 . - 0 ID=Physo137077;Parent=Physo137077;rank=1 scaffold_50 . exon 397684 397703 . - . ID=Physo137077.1;Parent=Physo137077;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 ensembl protein_coding_gene 397957 400570 . + . ID=Physo137078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500114;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 397957 400570 . + . ID=Physo137078;Parent=Physo137078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 397957 398508 . + 0 ID=Physo137078;Parent=Physo137078;rank=1 scaffold_50 . exon 397957 398508 . + . ID=Physo137078.1;Parent=Physo137078;constitutive=1;rank=1 scaffold_50 . CDS 398588 400450 . + 0 ID=Physo137078;Parent=Physo137078;rank=2 scaffold_50 . exon 398588 400570 . + . ID=Physo137078.2;Parent=Physo137078;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_50 ensembl protein_coding_gene 400595 401515 . - . ID=Physo137079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500115;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 400595 401515 . - . ID=Physo137079;Parent=Physo137079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 400595 401515 . - 0 ID=Physo137079;Parent=Physo137079;rank=1 scaffold_50 . exon 400595 401515 . - . ID=Physo137079.1;Parent=Physo137079;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 402829 403156 . + . ID=Physo137080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500116;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 402829 403156 . + . ID=Physo137080;Parent=Physo137080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 402829 403155 . + 0 ID=Physo137080;Parent=Physo137080;rank=1 scaffold_50 . exon 402829 403156 . + . ID=Physo137080.1;Parent=Physo137080;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_50 . repeat_region 408305 408361 . ? . description=dust scaffold_50 . repeat_region 409052 409060 . ? . description=dust scaffold_50 . exon 404897 405155 . + . ID=Physo108998.2;Parent=Physo108998;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 ensembl protein_coding_gene 405267 406660 . - . ID=Physo137082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500118;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 405267 406660 . - . ID=Physo137082;Parent=Physo137082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 405267 405746 . - 0 ID=Physo137082;Parent=Physo137082;rank=5 scaffold_50 . exon 405267 405746 . - . ID=Physo137082.5;Parent=Physo137082;constitutive=1;rank=5 scaffold_50 . CDS 405840 405885 . - 0 ID=Physo137082;Parent=Physo137082;rank=4 scaffold_50 . exon 405840 405885 . - . ID=Physo137082.4;Parent=Physo137082;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 405976 406211 . - 0 ID=Physo137082;Parent=Physo137082;rank=3 scaffold_50 . exon 405976 406211 . - . ID=Physo137082.3;Parent=Physo137082;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 406282 406353 . - 0 ID=Physo137082;Parent=Physo137082;rank=2 scaffold_50 . exon 406282 406353 . - . ID=Physo137082.2;Parent=Physo137082;constitutive=1;rank=2 scaffold_50 . CDS 406445 406660 . - 0 ID=Physo137082;Parent=Physo137082;rank=1 scaffold_50 . exon 406445 406660 . - . ID=Physo137082.1;Parent=Physo137082;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 408012 409298 . + . ID=Physo137083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500119;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 408012 409298 . + . ID=Physo137083;Parent=Physo137083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 408012 409298 . + . ID=Physo137083.1;Parent=Physo137083;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 408014 409030 . + 0 ID=Physo137083;Parent=Physo137083;rank=1 scaffold_50 ensembl protein_coding_gene 409270 411253 . - . ID=Physo137084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500120;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 409270 411253 . - . ID=Physo137084;Parent=Physo137084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 409270 409811 . - . ID=Physo137084.2;Parent=Physo137084;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_50 . CDS 409323 409811 . - 0 ID=Physo137084;Parent=Physo137084;rank=2 scaffold_50 . CDS 409896 411191 . - 0 ID=Physo137084;Parent=Physo137084;rank=1 scaffold_50 . exon 409896 411253 . - . ID=Physo137084.1;Parent=Physo137084;constitutive=1;ensembl_phase=-1;rank=1 scaffold_50 ensembl protein_coding_gene 411777 415762 . + . ID=Physo137085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500121;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 411777 415762 . + . ID=Physo137085;Parent=Physo137085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 411777 415387 . + 0 ID=Physo137085;Parent=Physo137085;rank=1 scaffold_50 . exon 411777 415387 . + . ID=Physo137085.1;Parent=Physo137085;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 415459 415762 . + 0 ID=Physo137085;Parent=Physo137085;rank=2 scaffold_50 . biological_region 415527 415530 0.999 + . logic_name=eponine scaffold_50 . biological_region 417068 417070 0.999 + . logic_name=eponine scaffold_50 . biological_region 419758 419760 0.999 - . logic_name=eponine scaffold_50 . biological_region 420259 420266 0.999 + . logic_name=eponine scaffold_50 . biological_region 420291 420297 0.999 + . logic_name=eponine scaffold_50 . biological_region 423278 423283 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 423597 424814 . + . ID=Physo118171;biotype=protein_coding;external_name=estExt_Genewise1.C_500029;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 423597 424814 . + . ID=Physo118171;Parent=Physo118171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 423597 424814 . + . ID=Physo118171.1;Parent=Physo118171;constitutive=1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 423666 424814 . + 0 ID=Physo118171;Parent=Physo118171;rank=1 scaffold_50 . exon 415459 415762 . + . ID=Physo137085.2;Parent=Physo137085;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 ensembl protein_coding_gene 416051 418212 . + . ID=Physo137086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500122;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 416051 418212 . + . ID=Physo137086;Parent=Physo137086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 416051 416301 . + 0 ID=Physo137086;Parent=Physo137086;rank=1 scaffold_50 . exon 416051 416301 . + . ID=Physo137086.1;Parent=Physo137086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 416538 417159 . + 0 ID=Physo137086;Parent=Physo137086;rank=2 scaffold_50 . exon 416538 417159 . + . ID=Physo137086.2;Parent=Physo137086;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 417235 418212 . + 0 ID=Physo137086;Parent=Physo137086;rank=3 scaffold_50 . exon 417235 418212 . + . ID=Physo137086.3;Parent=Physo137086;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 418534 419991 . + . ID=Physo137087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500123;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 418534 419991 . + . ID=Physo137087;Parent=Physo137087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 418534 419991 . + 0 ID=Physo137087;Parent=Physo137087;rank=1 scaffold_50 . exon 418534 419991 . + . ID=Physo137087.1;Parent=Physo137087;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 420268 421716 . + . ID=Physo137088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500124;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 420268 421716 . + . ID=Physo137088;Parent=Physo137088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 420268 420610 . + 0 ID=Physo137088;Parent=Physo137088;rank=1 scaffold_50 . exon 420268 420610 . + . ID=Physo137088.1;Parent=Physo137088;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 420686 421716 . + 0 ID=Physo137088;Parent=Physo137088;rank=2 scaffold_50 . exon 420686 421716 . + . ID=Physo137088.2;Parent=Physo137088;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . repeat_region 425816 425845 . ? . description=trf scaffold_50 . repeat_region 425919 425967 . ? . description=trf scaffold_50 . repeat_region 426121 426284 . ? . description=trf scaffold_50 . repeat_region 426121 426303 . ? . description=trf scaffold_50 . repeat_region 426122 426312 . ? . description=trf scaffold_50 . repeat_region 426123 426374 . ? . description=trf scaffold_50 . repeat_region 427124 427133 . ? . description=dust scaffold_50 . repeat_region 432351 432377 . ? . description=dust scaffold_50 . repeat_region 432352 432374 . ? . description=trf scaffold_50 . repeat_region 434051 434076 . ? . description=dust scaffold_50 . repeat_region 434054 434076 . ? . description=trf scaffold_50 ensembl protein_coding_gene 425263 425613 . + . ID=Physo137090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500126;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 425263 425613 . + . ID=Physo137090;Parent=Physo137090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 425263 425613 . + 0 ID=Physo137090;Parent=Physo137090;rank=1 scaffold_50 . exon 425263 425613 . + . ID=Physo137090.1;Parent=Physo137090;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 425793 426815 . - . ID=Physo137091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500127;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 425793 426815 . - . ID=Physo137091;Parent=Physo137091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 425793 426815 . - 0 ID=Physo137091;Parent=Physo137091;rank=1 scaffold_50 . exon 425793 426815 . - . ID=Physo137091.1;Parent=Physo137091;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 427219 427812 . + . ID=Physo137092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500128;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 427219 427812 . + . ID=Physo137092;Parent=Physo137092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 427219 427812 . + 0 ID=Physo137092;Parent=Physo137092;rank=1 scaffold_50 . exon 427219 427812 . + . ID=Physo137092.1;Parent=Physo137092;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 429276 431660 . + . ID=Physo137093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500129;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 429276 431660 . + . ID=Physo137093;Parent=Physo137093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 429276 431660 . + 0 ID=Physo137093;Parent=Physo137093;rank=1 scaffold_50 . exon 429276 431660 . + . ID=Physo137093.1;Parent=Physo137093;constitutive=1;rank=1 scaffold_50 ensembl pseudogene 431912 432399 . - . ID=Physo137094;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_500130;logic_name=jgi_physo1_1 scaffold_50 ensembl pseudogene 431912 432399 . - . ID=Physo137094;Parent=Physo137094;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_50 . exon 431912 432399 . - . ID=Physo137094.1;Parent=Physo137094;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 ensembl protein_coding_gene 434029 434514 . + . ID=Physo137095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500131;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 434029 434514 . + . ID=Physo137095;Parent=Physo137095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 434029 434514 . + . ID=Physo137095.1;Parent=Physo137095;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 434030 434491 . + 0 ID=Physo137095;Parent=Physo137095;rank=1 scaffold_50 . biological_region 438377 438380 0.999 + . logic_name=eponine scaffold_50 . biological_region 439231 439237 0.999 + . logic_name=eponine scaffold_50 . biological_region 440064 440068 0.999 + . logic_name=eponine scaffold_50 . biological_region 440146 440151 0.999 + . logic_name=eponine scaffold_50 . biological_region 440248 440249 0.999 - . logic_name=eponine scaffold_50 ensembl protein_coding_gene 434873 436330 . + . ID=Physo137096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500132;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 434873 436330 . + . ID=Physo137096;Parent=Physo137096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 434873 436330 . + 0 ID=Physo137096;Parent=Physo137096;rank=1 scaffold_50 . exon 434873 436330 . + . ID=Physo137096.1;Parent=Physo137096;constitutive=1;rank=1 scaffold_50 ensembl pseudogene 436440 436927 . - . ID=Physo137097;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_500133;logic_name=jgi_physo1_1 scaffold_50 ensembl pseudogene 436440 436927 . - . ID=Physo137097;Parent=Physo137097;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_50 . exon 436440 436927 . - . ID=Physo137097.1;Parent=Physo137097;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 ensembl protein_coding_gene 438557 439021 . + . ID=Physo137098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500134;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 438557 439021 . + . ID=Physo137098;Parent=Physo137098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 438557 439021 . + . ID=Physo137098.1;Parent=Physo137098;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 438558 439019 . + 0 ID=Physo137098;Parent=Physo137098;rank=1 scaffold_50 ensembl protein_coding_gene 439111 440880 . - . ID=Physo137099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500135;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 439111 440880 . - . ID=Physo137099;Parent=Physo137099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 439111 440880 . - 0 ID=Physo137099;Parent=Physo137099;rank=1 scaffold_50 . exon 439111 440880 . - . ID=Physo137099.1;Parent=Physo137099;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 443971 445038 . + . ID=Physo137100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500136;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 443971 445038 . + . ID=Physo137100;Parent=Physo137100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 443971 445038 . + . ID=Physo137100.1;Parent=Physo137100;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 443973 445022 . + 0 ID=Physo137100;Parent=Physo137100;rank=1 scaffold_50 . repeat_region 445905 445925 . ? . description=trf scaffold_50 . repeat_region 448213 448220 . ? . description=dust scaffold_50 ensembl protein_coding_gene 445113 446155 . - . ID=Physo108999;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500012;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 445113 446155 . - . ID=Physo108999;Parent=Physo108999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 445113 445577 . - . ID=Physo108999.2;Parent=Physo108999;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_50 . CDS 445215 445577 . - 0 ID=Physo108999;Parent=Physo108999;rank=2 scaffold_50 . CDS 445652 446155 . - 0 ID=Physo108999;Parent=Physo108999;rank=1 scaffold_50 . exon 445652 446155 . - . ID=Physo108999.1;Parent=Physo108999;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 446447 447864 . + . ID=Physo137102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500138;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 446447 447864 . + . ID=Physo137102;Parent=Physo137102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 446447 446682 . + . ID=Physo137102.1;Parent=Physo137102;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 446463 446682 . + 0 ID=Physo137102;Parent=Physo137102;rank=1 scaffold_50 . CDS 446751 446875 . + 0 ID=Physo137102;Parent=Physo137102;rank=2 scaffold_50 . exon 446751 446875 . + . ID=Physo137102.2;Parent=Physo137102;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 446964 447031 . + 0 ID=Physo137102;Parent=Physo137102;rank=3 scaffold_50 . exon 446964 447031 . + . ID=Physo137102.3;Parent=Physo137102;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_50 . CDS 447110 447176 . + 0 ID=Physo137102;Parent=Physo137102;rank=4 scaffold_50 . exon 447110 447176 . + . ID=Physo137102.4;Parent=Physo137102;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 447256 447864 . + 0 ID=Physo137102;Parent=Physo137102;rank=5 scaffold_50 . exon 447256 447864 . + . ID=Physo137102.5;Parent=Physo137102;constitutive=1;rank=5 scaffold_50 ensembl protein_coding_gene 448407 452569 . + . ID=Physo137103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500139;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 448407 452569 . + . ID=Physo137103;Parent=Physo137103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 448407 448945 . + 0 ID=Physo137103;Parent=Physo137103;rank=1 scaffold_50 . exon 448407 448945 . + . ID=Physo137103.1;Parent=Physo137103;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 449050 449273 . + 0 ID=Physo137103;Parent=Physo137103;rank=2 scaffold_50 . exon 449050 449273 . + . ID=Physo137103.2;Parent=Physo137103;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 449399 449555 . + 0 ID=Physo137103;Parent=Physo137103;rank=3 scaffold_50 . exon 449399 449555 . + . ID=Physo137103.3;Parent=Physo137103;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_50 . CDS 449643 449757 . + 0 ID=Physo137103;Parent=Physo137103;rank=4 scaffold_50 . exon 449643 449757 . + . ID=Physo137103.4;Parent=Physo137103;constitutive=1;ensembl_phase=2;rank=4 scaffold_50 . CDS 449820 450216 . + 0 ID=Physo137103;Parent=Physo137103;rank=5 scaffold_50 . exon 449820 450216 . + . ID=Physo137103.5;Parent=Physo137103;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_50 . CDS 450245 451441 . + 0 ID=Physo137103;Parent=Physo137103;rank=6 scaffold_50 . exon 450245 451441 . + . ID=Physo137103.6;Parent=Physo137103;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_50 . CDS 451537 451897 . + 0 ID=Physo137103;Parent=Physo137103;rank=7 scaffold_50 . exon 451537 451897 . + . ID=Physo137103.7;Parent=Physo137103;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_50 . CDS 451939 452569 . + 0 ID=Physo137103;Parent=Physo137103;rank=8 scaffold_50 . exon 451939 452569 . + . ID=Physo137103.8;Parent=Physo137103;constitutive=1;ensembl_phase=2;rank=8 scaffold_50 ensembl protein_coding_gene 453851 455848 . + . ID=Physo137104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500140;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 453851 455848 . + . ID=Physo137104;Parent=Physo137104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 453851 454225 . + 0 ID=Physo137104;Parent=Physo137104;rank=1 scaffold_50 . exon 453851 454225 . + . ID=Physo137104.1;Parent=Physo137104;constitutive=1;rank=1 scaffold_50 . CDS 454309 454507 . + 0 ID=Physo137104;Parent=Physo137104;rank=2 scaffold_50 . CDS 454575 455848 . + 0 ID=Physo137104;Parent=Physo137104;rank=3 scaffold_50 . biological_region 454273 454275 0.999 + . logic_name=eponine scaffold_50 . biological_region 455224 455227 0.999 - . logic_name=eponine scaffold_50 . biological_region 457893 457894 0.999 - . logic_name=eponine scaffold_50 . biological_region 458020 458023 0.999 + . logic_name=eponine scaffold_50 . biological_region 458761 458765 0.999 - . logic_name=eponine scaffold_50 . biological_region 458831 458836 0.999 - . logic_name=eponine scaffold_50 . biological_region 458980 458982 0.999 + . logic_name=eponine scaffold_50 . biological_region 459154 459157 0.999 + . logic_name=eponine scaffold_50 . biological_region 459173 459176 0.999 + . logic_name=eponine scaffold_50 . biological_region 459386 459388 0.999 + . logic_name=eponine scaffold_50 . biological_region 463412 463412 0.999 + . logic_name=eponine scaffold_50 . exon 454309 454507 . + . ID=Physo137104.2;Parent=Physo137104;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_50 . exon 454575 455848 . + . ID=Physo137104.3;Parent=Physo137104;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 ensembl protein_coding_gene 455888 456475 . - . ID=Physo137105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500141;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 455888 456475 . - . ID=Physo137105;Parent=Physo137105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 455888 456475 . - 0 ID=Physo137105;Parent=Physo137105;rank=1 scaffold_50 . exon 455888 456475 . - . ID=Physo137105.1;Parent=Physo137105;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 456723 457898 . - . ID=Physo137106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500142;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 456723 457898 . - . ID=Physo137106;Parent=Physo137106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 456723 457898 . - 0 ID=Physo137106;Parent=Physo137106;rank=1 scaffold_50 . exon 456723 457898 . - . ID=Physo137106.1;Parent=Physo137106;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 458566 459972 . + . ID=Physo137107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500143;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 458566 459972 . + . ID=Physo137107;Parent=Physo137107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 458566 459972 . + 0 ID=Physo137107;Parent=Physo137107;rank=1 scaffold_50 . exon 458566 459972 . + . ID=Physo137107.1;Parent=Physo137107;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 460036 461007 . - . ID=Physo137108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500144;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 460036 461007 . - . ID=Physo137108;Parent=Physo137108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 460036 461007 . - 0 ID=Physo137108;Parent=Physo137108;rank=1 scaffold_50 . exon 460036 461007 . - . ID=Physo137108.1;Parent=Physo137108;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 462287 465080 . - . ID=Physo137109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500145;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 462287 465080 . - . ID=Physo137109;Parent=Physo137109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 462287 462424 . - 0 ID=Physo137109;Parent=Physo137109;rank=8 scaffold_50 . exon 462287 462424 . - . ID=Physo137109.8;Parent=Physo137109;constitutive=1;rank=8 scaffold_50 . CDS 462460 463511 . - 0 ID=Physo137109;Parent=Physo137109;rank=7 scaffold_50 . exon 462460 463511 . - . ID=Physo137109.7;Parent=Physo137109;constitutive=1;ensembl_phase=1;rank=7 scaffold_50 . CDS 463553 463590 . - 0 ID=Physo137109;Parent=Physo137109;rank=6 scaffold_50 . exon 463553 463590 . - . ID=Physo137109.6;Parent=Physo137109;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_50 . CDS 463672 463768 . - 0 ID=Physo137109;Parent=Physo137109;rank=5 scaffold_50 . exon 463672 463768 . - . ID=Physo137109.5;Parent=Physo137109;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_50 . CDS 463991 464066 . - 0 ID=Physo137109;Parent=Physo137109;rank=4 scaffold_50 . exon 463991 464066 . - . ID=Physo137109.4;Parent=Physo137109;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_50 . CDS 464127 464306 . - 0 ID=Physo137109;Parent=Physo137109;rank=3 scaffold_50 . CDS 464335 464793 . - 0 ID=Physo137109;Parent=Physo137109;rank=2 scaffold_50 . CDS 465009 465080 . - 0 ID=Physo137109;Parent=Physo137109;rank=1 scaffold_50 . exon 464127 464306 . - . ID=Physo137109.3;Parent=Physo137109;constitutive=1;rank=3 scaffold_50 . exon 464335 464793 . - . ID=Physo137109.2;Parent=Physo137109;constitutive=1;rank=2 scaffold_50 . exon 465009 465080 . - . ID=Physo137109.1;Parent=Physo137109;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 465608 469816 . - . ID=Physo137110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500146;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 465608 469816 . - . ID=Physo137110;Parent=Physo137110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 465608 465615 . - 0 ID=Physo137110;Parent=Physo137110;rank=7 scaffold_50 . exon 465608 465615 . - . ID=Physo137110.7;Parent=Physo137110;constitutive=1;ensembl_phase=1;rank=7 scaffold_50 . CDS 465812 466189 . - 0 ID=Physo137110;Parent=Physo137110;rank=6 scaffold_50 . exon 465812 466189 . - . ID=Physo137110.6;Parent=Physo137110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_50 . CDS 466699 467574 . - 0 ID=Physo137110;Parent=Physo137110;rank=5 scaffold_50 . exon 466699 467574 . - . ID=Physo137110.5;Parent=Physo137110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_50 . CDS 467984 468407 . - 0 ID=Physo137110;Parent=Physo137110;rank=4 scaffold_50 . exon 467984 468407 . - . ID=Physo137110.4;Parent=Physo137110;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_50 . CDS 468470 468584 . - 0 ID=Physo137110;Parent=Physo137110;rank=3 scaffold_50 . exon 468470 468584 . - . ID=Physo137110.3;Parent=Physo137110;constitutive=1;ensembl_phase=2;rank=3 scaffold_50 . CDS 468672 469210 . - 0 ID=Physo137110;Parent=Physo137110;rank=2 scaffold_50 . exon 468672 469210 . - . ID=Physo137110.2;Parent=Physo137110;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_50 . CDS 469301 469816 . - 0 ID=Physo137110;Parent=Physo137110;rank=1 scaffold_50 . exon 469301 469816 . - . ID=Physo137110.1;Parent=Physo137110;constitutive=1;rank=1 scaffold_50 ensembl protein_coding_gene 470574 471312 . + . ID=Physo137111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500147;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 470574 471312 . + . ID=Physo137111;Parent=Physo137111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 470574 471054 . + 0 ID=Physo137111;Parent=Physo137111;rank=1 scaffold_50 . exon 470574 471054 . + . ID=Physo137111.1;Parent=Physo137111;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_50 . CDS 471121 471164 . + 0 ID=Physo137111;Parent=Physo137111;rank=2 scaffold_50 . exon 471121 471164 . + . ID=Physo137111.2;Parent=Physo137111;constitutive=1;ensembl_phase=1;rank=2 scaffold_50 . CDS 471244 471312 . + 0 ID=Physo137111;Parent=Physo137111;rank=3 scaffold_50 . exon 471244 471312 . + . ID=Physo137111.3;Parent=Physo137111;constitutive=1;rank=3 scaffold_50 ensembl protein_coding_gene 471427 472519 . - . ID=Physo137112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500148;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 471427 472519 . - . ID=Physo137112;Parent=Physo137112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 471427 472010 . - 0 ID=Physo137112;Parent=Physo137112;rank=3 scaffold_50 . exon 471427 472010 . - . ID=Physo137112.3;Parent=Physo137112;constitutive=1;ensembl_phase=1;rank=3 scaffold_50 . CDS 472089 472222 . - 0 ID=Physo137112;Parent=Physo137112;rank=2 scaffold_50 . exon 472089 472222 . - . ID=Physo137112.2;Parent=Physo137112;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_50 . CDS 472293 472519 . - 0 ID=Physo137112;Parent=Physo137112;rank=1 scaffold_50 . exon 472293 472519 . - . ID=Physo137112.1;Parent=Physo137112;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 ensembl protein_coding_gene 473155 476011 . + . ID=Physo137113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500149;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 473155 476011 . + . ID=Physo137113;Parent=Physo137113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 473155 473318 . + 0 ID=Physo137113;Parent=Physo137113;rank=1 scaffold_50 . exon 473155 473318 . + . ID=Physo137113.1;Parent=Physo137113;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_50 . CDS 473389 476011 . + 0 ID=Physo137113;Parent=Physo137113;rank=2 scaffold_50 . exon 473389 476011 . + . ID=Physo137113.2;Parent=Physo137113;constitutive=1;ensembl_phase=2;rank=2 scaffold_50 . repeat_region 476420 476464 . ? . description=trf scaffold_50 . repeat_region 476777 476806 . ? . description=trf scaffold_50 . biological_region 478520 478523 0.999 - . logic_name=eponine scaffold_50 . biological_region 478651 478656 0.999 - . logic_name=eponine scaffold_50 . biological_region 479176 479179 0.999 - . logic_name=eponine scaffold_50 . biological_region 479256 479256 0.999 + . logic_name=eponine scaffold_50 . biological_region 482534 482537 0.999 - . logic_name=eponine scaffold_50 . biological_region 482554 482556 0.999 + . logic_name=eponine scaffold_50 . biological_region 482921 482924 0.999 + . logic_name=eponine scaffold_50 . biological_region 483262 483266 0.999 + . logic_name=eponine scaffold_50 ensembl protein_coding_gene 477428 482040 . + . ID=Physo137114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500150;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 477428 482040 . + . ID=Physo137114;Parent=Physo137114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . exon 477428 482040 . + . ID=Physo137114.1;Parent=Physo137114;constitutive=1;ensembl_phase=-1;rank=1 scaffold_50 . CDS 477736 482040 . + 0 ID=Physo137114;Parent=Physo137114;rank=1 scaffold_50 ensembl protein_coding_gene 482758 486996 . + . ID=Physo137115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_500151;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 482758 486996 . + . ID=Physo137115;Parent=Physo137115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 482758 486996 . + 0 ID=Physo137115;Parent=Physo137115;rank=1 scaffold_50 . exon 482758 486996 . + . ID=Physo137115.1;Parent=Physo137115;constitutive=1;rank=1 scaffold_50 . repeat_region 487632 487655 . ? . description=dust scaffold_50 ensembl protein_coding_gene 490629 492528 . - . ID=Physo109000;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_500013;logic_name=jgi_physo1_1 scaffold_50 ensembl transcript 490629 492528 . - . ID=Physo109000;Parent=Physo109000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_50 . CDS 490629 490793 . - 0 ID=Physo109000;Parent=Physo109000;rank=8 scaffold_50 . exon 490629 490793 . - . ID=Physo109000.8;Parent=Physo109000;constitutive=1;rank=8 scaffold_50 . CDS 490873 490988 . - 0 ID=Physo109000;Parent=Physo109000;rank=7 scaffold_50 . exon 490873 490988 . - . ID=Physo109000.7;Parent=Physo109000;constitutive=1;ensembl_phase=1;rank=7 scaffold_50 . CDS 491027 491027 . - 0 ID=Physo109000;Parent=Physo109000;rank=6 scaffold_50 . exon 491027 491027 . - . ID=Physo109000.6;Parent=Physo109000;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_50 . CDS 491066 491416 . - 0 ID=Physo109000;Parent=Physo109000;rank=5 scaffold_50 . exon 491066 491416 . - . ID=Physo109000.5;Parent=Physo109000;constitutive=1;rank=5 scaffold_50 . CDS 491486 491590 . - 0 ID=Physo109000;Parent=Physo109000;rank=4 scaffold_50 . exon 491486 491590 . - . ID=Physo109000.4;Parent=Physo109000;constitutive=1;rank=4 scaffold_50 . CDS 491622 491759 . - 0 ID=Physo109000;Parent=Physo109000;rank=3 scaffold_50 . exon 491622 491759 . - . ID=Physo109000.3;Parent=Physo109000;constitutive=1;rank=3 scaffold_50 . CDS 491817 491849 . - 0 ID=Physo109000;Parent=Physo109000;rank=2 scaffold_50 . exon 491817 491849 . - . ID=Physo109000.2;Parent=Physo109000;constitutive=1;rank=2 scaffold_50 . CDS 492478 492528 . - 0 ID=Physo109000;Parent=Physo109000;rank=1 scaffold_50 . exon 492478 492528 . - . ID=Physo109000.1;Parent=Physo109000;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_47 1 503009 scaffold_47 . repeat_region 302 348 . ? . description=trf scaffold_47 . repeat_region 302 357 . ? . description=trf scaffold_47 . repeat_region 304 381 . ? . description=trf scaffold_47 . biological_region 1624 1626 0.999 - . logic_name=eponine scaffold_47 . biological_region 6086 6086 0.999 - . logic_name=eponine scaffold_47 . biological_region 6160 6160 0.999 - . logic_name=eponine scaffold_47 . repeat_region 7207 7215 . ? . description=dust scaffold_47 . biological_region 7559 7565 0.999 + . logic_name=eponine scaffold_47 . biological_region 7637 7640 0.999 - . logic_name=eponine scaffold_47 . biological_region 7664 7667 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 1344 5632 . - . ID=Physo117884;biotype=protein_coding;external_name=estExt_Genewise1.C_470050;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 1344 5632 . - . ID=Physo117884;Parent=Physo117884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 1344 2725 . - . ID=Physo117884.4;Parent=Physo117884;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_47 . CDS 2367 2725 . - 0 ID=Physo117884;Parent=Physo117884;rank=4 scaffold_47 . CDS 3602 3683 . - 0 ID=Physo117884;Parent=Physo117884;rank=3 scaffold_47 . exon 3602 3683 . - . ID=Physo117884.3;Parent=Physo117884;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 3764 4612 . - 0 ID=Physo117884;Parent=Physo117884;rank=2 scaffold_47 . exon 3764 4612 . - . ID=Physo117884.2;Parent=Physo117884;constitutive=1;rank=2 scaffold_47 . CDS 4679 5623 . - 0 ID=Physo117884;Parent=Physo117884;rank=1 scaffold_47 . exon 4679 5632 . - . ID=Physo117884.1;Parent=Physo117884;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 ensembl protein_coding_gene 9035 9713 . - . ID=Physo136589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470003;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 9035 9713 . - . ID=Physo136589;Parent=Physo136589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 9035 9043 . - 0 ID=Physo136589;Parent=Physo136589;rank=3 scaffold_47 . exon 9035 9043 . - . ID=Physo136589.3;Parent=Physo136589;constitutive=1;rank=3 scaffold_47 . CDS 9186 9507 . - 0 ID=Physo136589;Parent=Physo136589;rank=2 scaffold_47 . exon 9186 9507 . - . ID=Physo136589.2;Parent=Physo136589;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 9709 9713 . - 0 ID=Physo136589;Parent=Physo136589;rank=1 scaffold_47 . exon 9709 9713 . - . ID=Physo136589.1;Parent=Physo136589;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 14034 14837 . + . ID=Physo136590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470004;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 14034 14837 . + . ID=Physo136590;Parent=Physo136590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 14034 14837 . + 0 ID=Physo136590;Parent=Physo136590;rank=1 scaffold_47 . exon 14034 14837 . + . ID=Physo136590.1;Parent=Physo136590;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 15585 16441 . - . ID=Physo136591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470005;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 15585 16441 . - . ID=Physo136591;Parent=Physo136591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 15585 15752 . - 0 ID=Physo136591;Parent=Physo136591;rank=2 scaffold_47 . exon 15585 15752 . - . ID=Physo136591.2;Parent=Physo136591;constitutive=1;rank=2 scaffold_47 . CDS 15929 16441 . - 0 ID=Physo136591;Parent=Physo136591;rank=1 scaffold_47 . exon 15929 16441 . - . ID=Physo136591.1;Parent=Physo136591;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 16539 17931 . + . ID=Physo136592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470006;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 16539 17931 . + . ID=Physo136592;Parent=Physo136592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 16539 16616 . + 0 ID=Physo136592;Parent=Physo136592;rank=1 scaffold_47 . exon 16539 16616 . + . ID=Physo136592.1;Parent=Physo136592;constitutive=1;rank=1 scaffold_47 . CDS 16659 16742 . + 0 ID=Physo136592;Parent=Physo136592;rank=2 scaffold_47 . exon 16659 16742 . + . ID=Physo136592.2;Parent=Physo136592;constitutive=1;rank=2 scaffold_47 . CDS 16824 17116 . + 0 ID=Physo136592;Parent=Physo136592;rank=3 scaffold_47 . exon 16824 17116 . + . ID=Physo136592.3;Parent=Physo136592;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 17196 17931 . + 0 ID=Physo136592;Parent=Physo136592;rank=4 scaffold_47 . exon 17196 17931 . + . ID=Physo136592.4;Parent=Physo136592;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 ensembl protein_coding_gene 18082 20790 . - . ID=Physo136593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470007;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 18082 20790 . - . ID=Physo136593;Parent=Physo136593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 18082 20790 . - . ID=Physo136593.1;Parent=Physo136593;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_47 . CDS 18172 20790 . - 0 ID=Physo136593;Parent=Physo136593;rank=1 scaffold_47 . repeat_region 20585 20643 . ? . description=dust scaffold_47 . repeat_region 20586 20643 . ? . description=trf scaffold_47 . repeat_region 20586 20752 . + . description=(CTG)n scaffold_47 . repeat_region 20590 20634 . ? . description=trf scaffold_47 . repeat_region 20590 20652 . ? . description=trf scaffold_47 . repeat_region 20592 20643 . ? . description=trf scaffold_47 . biological_region 21268 21268 0.999 - . logic_name=eponine scaffold_47 . biological_region 25832 25836 0.999 + . logic_name=eponine scaffold_47 . repeat_region 26848 26882 . ? . description=dust scaffold_47 . repeat_region 26906 26914 . ? . description=dust scaffold_47 . biological_region 27413 27417 0.999 + . logic_name=eponine scaffold_47 . biological_region 27432 27436 0.999 - . logic_name=eponine scaffold_47 . biological_region 27463 27468 0.999 + . logic_name=eponine scaffold_47 . biological_region 27498 27498 0.999 - . logic_name=eponine scaffold_47 . biological_region 29280 29286 0.999 + . logic_name=eponine scaffold_47 . biological_region 29410 29413 0.999 - . logic_name=eponine scaffold_47 . biological_region 29422 29426 0.999 + . logic_name=eponine scaffold_47 . biological_region 29434 29440 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 21139 22390 . + . ID=Physo136594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470008;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 21139 22390 . + . ID=Physo136594;Parent=Physo136594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 21139 22326 . + 0 ID=Physo136594;Parent=Physo136594;rank=1 scaffold_47 . exon 21139 22326 . + . ID=Physo136594.1;Parent=Physo136594;constitutive=1;rank=1 scaffold_47 . CDS 22379 22390 . + 0 ID=Physo136594;Parent=Physo136594;rank=2 scaffold_47 . exon 22379 22390 . + . ID=Physo136594.2;Parent=Physo136594;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 22589 23253 . - . ID=Physo136595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470009;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 22589 23253 . - . ID=Physo136595;Parent=Physo136595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 22589 23125 . - 0 ID=Physo136595;Parent=Physo136595;rank=2 scaffold_47 . exon 22589 23125 . - . ID=Physo136595.2;Parent=Physo136595;constitutive=1;rank=2 scaffold_47 . CDS 23167 23253 . - 0 ID=Physo136595;Parent=Physo136595;rank=1 scaffold_47 . exon 23167 23253 . - . ID=Physo136595.1;Parent=Physo136595;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 23439 24128 . + . ID=Physo136596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470010;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 23439 24128 . + . ID=Physo136596;Parent=Physo136596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 23439 23729 . + 0 ID=Physo136596;Parent=Physo136596;rank=1 scaffold_47 . exon 23439 23729 . + . ID=Physo136596.1;Parent=Physo136596;constitutive=1;rank=1 scaffold_47 . CDS 23793 24128 . + 0 ID=Physo136596;Parent=Physo136596;rank=2 scaffold_47 . exon 23793 24128 . + . ID=Physo136596.2;Parent=Physo136596;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 24239 25948 . - . ID=Physo136597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470011;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 24239 25948 . - . ID=Physo136597;Parent=Physo136597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 24239 25948 . - 0 ID=Physo136597;Parent=Physo136597;rank=1 scaffold_47 . exon 24239 25948 . - . ID=Physo136597.1;Parent=Physo136597;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 27251 28695 . + . ID=Physo136598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470012;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 27251 28695 . + . ID=Physo136598;Parent=Physo136598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 27251 27520 . + . ID=Physo136598.1;Parent=Physo136598;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 27308 27520 . + 0 ID=Physo136598;Parent=Physo136598;rank=1 scaffold_47 . CDS 27607 28695 . + 0 ID=Physo136598;Parent=Physo136598;rank=2 scaffold_47 . exon 27607 28695 . + . ID=Physo136598.2;Parent=Physo136598;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 28749 30050 . - . ID=Physo136599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470013;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 28749 30050 . - . ID=Physo136599;Parent=Physo136599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 28749 30050 . - 0 ID=Physo136599;Parent=Physo136599;rank=1 scaffold_47 . exon 28749 30050 . - . ID=Physo136599.1;Parent=Physo136599;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 34212 35663 . + . ID=Physo108963;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_470002;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 34212 35663 . + . ID=Physo108963;Parent=Physo108963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 34212 35663 . + 0 ID=Physo108963;Parent=Physo108963;rank=1 scaffold_47 . exon 34212 35663 . + . ID=Physo108963.1;Parent=Physo108963;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 31401 31965 . - . ID=Physo117896;biotype=protein_coding;external_name=estExt_Genewise1.C_470062;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 31401 31965 . - . ID=Physo117896;Parent=Physo117896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 31401 31506 . - 0 ID=Physo117896;Parent=Physo117896;rank=2 scaffold_47 . exon 31401 31506 . - . ID=Physo117896.3;Parent=Physo117896;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 31571 31785 . - 0 ID=Physo117896;Parent=Physo117896;rank=1 scaffold_47 . exon 31571 31791 . - . ID=Physo117896.2;Parent=Physo117896;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_47 . exon 31864 31965 . - . ID=Physo117896.1;Parent=Physo117896;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_47 ensembl protein_coding_gene 30219 31201 . + . ID=Physo136600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470014;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 30219 31201 . + . ID=Physo136600;Parent=Physo136600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 30219 30245 . + 0 ID=Physo136600;Parent=Physo136600;rank=1 scaffold_47 . exon 30219 30245 . + . ID=Physo136600.1;Parent=Physo136600;constitutive=1;rank=1 scaffold_47 . CDS 30323 31201 . + 0 ID=Physo136600;Parent=Physo136600;rank=2 scaffold_47 . exon 30323 31201 . + . ID=Physo136600.2;Parent=Physo136600;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 32188 33072 . + . ID=Physo136601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470015;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 32188 33072 . + . ID=Physo136601;Parent=Physo136601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 32188 32282 . + . ID=Physo136601.1;Parent=Physo136601;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 32274 32282 . + 0 ID=Physo136601;Parent=Physo136601;rank=1 scaffold_47 . CDS 32367 32438 . + 0 ID=Physo136601;Parent=Physo136601;rank=2 scaffold_47 . exon 32367 32438 . + . ID=Physo136601.2;Parent=Physo136601;constitutive=1;rank=2 scaffold_47 . CDS 32509 32550 . + 0 ID=Physo136601;Parent=Physo136601;rank=3 scaffold_47 . exon 32509 32550 . + . ID=Physo136601.3;Parent=Physo136601;constitutive=1;rank=3 scaffold_47 . CDS 32628 32703 . + 0 ID=Physo136601;Parent=Physo136601;rank=4 scaffold_47 . exon 32628 32703 . + . ID=Physo136601.4;Parent=Physo136601;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_47 . CDS 32768 32985 . + 0 ID=Physo136601;Parent=Physo136601;rank=5 scaffold_47 . exon 32768 33072 . + . ID=Physo136601.5;Parent=Physo136601;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_47 ensembl protein_coding_gene 33095 34092 . - . ID=Physo136602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470016;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 33095 34092 . - . ID=Physo136602;Parent=Physo136602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 33095 33449 . - 0 ID=Physo136602;Parent=Physo136602;rank=6 scaffold_47 . exon 33095 33449 . - . ID=Physo136602.6;Parent=Physo136602;constitutive=1;ensembl_phase=2;rank=6 scaffold_47 . CDS 33471 33491 . - 0 ID=Physo136602;Parent=Physo136602;rank=5 scaffold_47 . exon 33471 33491 . - . ID=Physo136602.5;Parent=Physo136602;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_47 . CDS 33531 33619 . - 0 ID=Physo136602;Parent=Physo136602;rank=4 scaffold_47 . exon 33531 33619 . - . ID=Physo136602.4;Parent=Physo136602;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_47 . CDS 33704 33828 . - 0 ID=Physo136602;Parent=Physo136602;rank=3 scaffold_47 . exon 33704 33828 . - . ID=Physo136602.3;Parent=Physo136602;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 33889 33970 . - 0 ID=Physo136602;Parent=Physo136602;rank=2 scaffold_47 . exon 33889 33970 . - . ID=Physo136602.2;Parent=Physo136602;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 34036 34092 . - 0 ID=Physo136602;Parent=Physo136602;rank=1 scaffold_47 . exon 34036 34092 . - . ID=Physo136602.1;Parent=Physo136602;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 35784 36394 . - . ID=Physo136604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470018;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 35784 36394 . - . ID=Physo136604;Parent=Physo136604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 35784 36371 . - 0 ID=Physo136604;Parent=Physo136604;rank=1 scaffold_47 . exon 35784 36394 . - . ID=Physo136604.1;Parent=Physo136604;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 ensembl protein_coding_gene 37559 39425 . + . ID=Physo136605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470019;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 37559 39425 . + . ID=Physo136605;Parent=Physo136605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 37559 37607 . + 0 ID=Physo136605;Parent=Physo136605;rank=1 scaffold_47 . exon 37559 37607 . + . ID=Physo136605.1;Parent=Physo136605;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 37685 38707 . + 0 ID=Physo136605;Parent=Physo136605;rank=2 scaffold_47 . exon 37685 38707 . + . ID=Physo136605.2;Parent=Physo136605;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 38775 38845 . + 0 ID=Physo136605;Parent=Physo136605;rank=3 scaffold_47 . exon 38775 38845 . + . ID=Physo136605.3;Parent=Physo136605;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 38913 39425 . + 0 ID=Physo136605;Parent=Physo136605;rank=4 scaffold_47 . exon 38913 39425 . + . ID=Physo136605.4;Parent=Physo136605;constitutive=1;rank=4 scaffold_47 . biological_region 40957 40963 0.999 + . logic_name=eponine scaffold_47 . repeat_region 42813 42855 . ? . description=dust scaffold_47 . biological_region 44481 44484 0.999 + . logic_name=eponine scaffold_47 . biological_region 44804 44808 0.999 + . logic_name=eponine scaffold_47 . biological_region 44858 44863 0.999 + . logic_name=eponine scaffold_47 . biological_region 44869 44876 0.999 - . logic_name=eponine scaffold_47 . biological_region 44895 44899 0.999 + . logic_name=eponine scaffold_47 . biological_region 44927 44929 0.999 - . logic_name=eponine scaffold_47 . biological_region 44981 44985 0.999 + . logic_name=eponine scaffold_47 . repeat_region 44989 45028 . ? . description=dust scaffold_47 . repeat_region 45066 45095 . ? . description=dust scaffold_47 . biological_region 46156 46158 0.999 + . logic_name=eponine scaffold_47 . biological_region 48131 48136 0.999 - . logic_name=eponine scaffold_47 . biological_region 48185 48190 0.999 + . logic_name=eponine scaffold_47 . biological_region 48198 48200 0.999 + . logic_name=eponine scaffold_47 . biological_region 48418 48421 0.999 - . logic_name=eponine scaffold_47 . biological_region 48902 48904 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 40852 45102 . - . ID=Physo136606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470020;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 40852 45102 . - . ID=Physo136606;Parent=Physo136606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 40852 41051 . - . ID=Physo136606.6;Parent=Physo136606;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_47 . CDS 40934 41051 . - 0 ID=Physo136606;Parent=Physo136606;rank=6 scaffold_47 . CDS 41310 41459 . - 0 ID=Physo136606;Parent=Physo136606;rank=5 scaffold_47 . exon 41310 41459 . - . ID=Physo136606.5;Parent=Physo136606;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_47 . CDS 41520 41535 . - 0 ID=Physo136606;Parent=Physo136606;rank=4 scaffold_47 . exon 41520 41535 . - . ID=Physo136606.4;Parent=Physo136606;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_47 . CDS 41733 42534 . - 0 ID=Physo136606;Parent=Physo136606;rank=3 scaffold_47 . exon 41733 42534 . - . ID=Physo136606.3;Parent=Physo136606;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 42744 42804 . - 0 ID=Physo136606;Parent=Physo136606;rank=2 scaffold_47 . exon 42744 42804 . - . ID=Physo136606.2;Parent=Physo136606;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 42890 45102 . - 0 ID=Physo136606;Parent=Physo136606;rank=1 scaffold_47 . exon 42890 45102 . - . ID=Physo136606.1;Parent=Physo136606;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 46108 46713 . + . ID=Physo136607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470021;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 46108 46713 . + . ID=Physo136607;Parent=Physo136607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 46108 46713 . + 0 ID=Physo136607;Parent=Physo136607;rank=1 scaffold_47 . exon 46108 46713 . + . ID=Physo136607.1;Parent=Physo136607;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 48124 51062 . + . ID=Physo136608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470022;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 48124 51062 . + . ID=Physo136608;Parent=Physo136608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 48124 50840 . + . ID=Physo136608.1;Parent=Physo136608;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 48248 50840 . + 0 ID=Physo136608;Parent=Physo136608;rank=1 scaffold_47 . CDS 50917 51062 . + 0 ID=Physo136608;Parent=Physo136608;rank=2 scaffold_47 . repeat_region 50300 50362 . ? . description=trf scaffold_47 . repeat_region 50300 50374 . ? . description=trf scaffold_47 . exon 50917 51062 . + . ID=Physo136608.2;Parent=Physo136608;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 ensembl protein_coding_gene 51227 56272 . - . ID=Physo136609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470023;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 51227 56272 . - . ID=Physo136609;Parent=Physo136609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 51227 52683 . - 0 ID=Physo136609;Parent=Physo136609;rank=13 scaffold_47 . exon 51227 52683 . - . ID=Physo136609.13;Parent=Physo136609;constitutive=1;ensembl_phase=1;rank=13 scaffold_47 . CDS 52780 52900 . - 0 ID=Physo136609;Parent=Physo136609;rank=12 scaffold_47 . exon 52780 52900 . - . ID=Physo136609.12;Parent=Physo136609;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_47 . CDS 52979 53049 . - 0 ID=Physo136609;Parent=Physo136609;rank=11 scaffold_47 . exon 52979 53049 . - . ID=Physo136609.11;Parent=Physo136609;constitutive=1;ensembl_phase=1;rank=11 scaffold_47 . CDS 53122 53183 . - 0 ID=Physo136609;Parent=Physo136609;rank=10 scaffold_47 . exon 53122 53183 . - . ID=Physo136609.10;Parent=Physo136609;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_47 . CDS 53671 54012 . - 0 ID=Physo136609;Parent=Physo136609;rank=9 scaffold_47 . exon 53671 54012 . - . ID=Physo136609.9;Parent=Physo136609;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_47 . CDS 54082 54616 . - 0 ID=Physo136609;Parent=Physo136609;rank=8 scaffold_47 . exon 54082 54616 . - . ID=Physo136609.8;Parent=Physo136609;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_47 . CDS 54919 54970 . - 0 ID=Physo136609;Parent=Physo136609;rank=7 scaffold_47 . exon 54919 54970 . - . ID=Physo136609.7;Parent=Physo136609;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_47 . CDS 55300 55364 . - 0 ID=Physo136609;Parent=Physo136609;rank=6 scaffold_47 . exon 55300 55364 . - . ID=Physo136609.6;Parent=Physo136609;constitutive=1;ensembl_phase=1;rank=6 scaffold_47 . CDS 55457 55515 . - 0 ID=Physo136609;Parent=Physo136609;rank=5 scaffold_47 . exon 55457 55515 . - . ID=Physo136609.5;Parent=Physo136609;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_47 . CDS 55593 55674 . - 0 ID=Physo136609;Parent=Physo136609;rank=4 scaffold_47 . exon 55593 55674 . - . ID=Physo136609.4;Parent=Physo136609;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_47 . CDS 55740 55822 . - 0 ID=Physo136609;Parent=Physo136609;rank=3 scaffold_47 . exon 55740 55822 . - . ID=Physo136609.3;Parent=Physo136609;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 55893 55987 . - 0 ID=Physo136609;Parent=Physo136609;rank=2 scaffold_47 . exon 55893 55987 . - . ID=Physo136609.2;Parent=Physo136609;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_47 . CDS 56198 56272 . - 0 ID=Physo136609;Parent=Physo136609;rank=1 scaffold_47 . exon 56198 56272 . - . ID=Physo136609.1;Parent=Physo136609;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 56514 58542 . + . ID=Physo136610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470024;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 56514 58542 . + . ID=Physo136610;Parent=Physo136610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 56514 56732 . + 0 ID=Physo136610;Parent=Physo136610;rank=1 scaffold_47 . exon 56514 56732 . + . ID=Physo136610.1;Parent=Physo136610;constitutive=1;rank=1 scaffold_47 . CDS 56809 58542 . + 0 ID=Physo136610;Parent=Physo136610;rank=2 scaffold_47 . exon 56809 58542 . + . ID=Physo136610.2;Parent=Physo136610;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 58677 59260 . - . ID=Physo136611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470025;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 58677 59260 . - . ID=Physo136611;Parent=Physo136611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 58677 59260 . - . ID=Physo136611.1;Parent=Physo136611;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_47 . CDS 58748 59260 . - 0 ID=Physo136611;Parent=Physo136611;rank=1 scaffold_47 . repeat_region 66471 66496 . ? . description=dust scaffold_47 ensembl protein_coding_gene 61195 63918 . - . ID=Physo136613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470027;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 61195 63918 . - . ID=Physo136613;Parent=Physo136613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 61195 61373 . - 0 ID=Physo136613;Parent=Physo136613;rank=11 scaffold_47 . exon 61195 61373 . - . ID=Physo136613.11;Parent=Physo136613;constitutive=1;ensembl_phase=1;rank=11 scaffold_47 . CDS 61462 61606 . - 0 ID=Physo136613;Parent=Physo136613;rank=10 scaffold_47 . exon 61462 61606 . - . ID=Physo136613.10;Parent=Physo136613;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_47 . CDS 61669 61877 . - 0 ID=Physo136613;Parent=Physo136613;rank=9 scaffold_47 . exon 61669 61877 . - . ID=Physo136613.9;Parent=Physo136613;constitutive=1;ensembl_phase=1;rank=9 scaffold_47 . CDS 61999 62178 . - 0 ID=Physo136613;Parent=Physo136613;rank=8 scaffold_47 . exon 61999 62178 . - . ID=Physo136613.8;Parent=Physo136613;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_47 . CDS 62372 62552 . - 0 ID=Physo136613;Parent=Physo136613;rank=7 scaffold_47 . exon 62372 62552 . - . ID=Physo136613.7;Parent=Physo136613;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_47 . CDS 62618 62705 . - 0 ID=Physo136613;Parent=Physo136613;rank=6 scaffold_47 . exon 62618 62705 . - . ID=Physo136613.6;Parent=Physo136613;constitutive=1;ensembl_phase=2;rank=6 scaffold_47 . CDS 62740 62900 . - 0 ID=Physo136613;Parent=Physo136613;rank=5 scaffold_47 . exon 62740 62900 . - . ID=Physo136613.5;Parent=Physo136613;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_47 . CDS 62962 63176 . - 0 ID=Physo136613;Parent=Physo136613;rank=4 scaffold_47 . exon 62962 63176 . - . ID=Physo136613.4;Parent=Physo136613;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 63241 63306 . - 0 ID=Physo136613;Parent=Physo136613;rank=3 scaffold_47 . exon 63241 63306 . - . ID=Physo136613.3;Parent=Physo136613;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 63433 63580 . - 0 ID=Physo136613;Parent=Physo136613;rank=2 scaffold_47 . exon 63433 63580 . - . ID=Physo136613.2;Parent=Physo136613;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 63685 63918 . - 0 ID=Physo136613;Parent=Physo136613;rank=1 scaffold_47 . exon 63685 63918 . - . ID=Physo136613.1;Parent=Physo136613;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 64041 66686 . + . ID=Physo136614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470028;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 64041 66686 . + . ID=Physo136614;Parent=Physo136614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 64041 66686 . + 0 ID=Physo136614;Parent=Physo136614;rank=1 scaffold_47 . exon 64041 66686 . + . ID=Physo136614.1;Parent=Physo136614;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 67558 70400 . - . ID=Physo136615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470029;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 67558 70400 . - . ID=Physo136615;Parent=Physo136615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 67558 70074 . - . ID=Physo136615.3;Parent=Physo136615;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_47 . CDS 67600 70074 . - 0 ID=Physo136615;Parent=Physo136615;rank=3 scaffold_47 . CDS 70158 70302 . - 0 ID=Physo136615;Parent=Physo136615;rank=2 scaffold_47 . CDS 70369 70400 . - 0 ID=Physo136615;Parent=Physo136615;rank=1 scaffold_47 ensembl protein_coding_gene 59650 61140 . + . ID=Physo157464;biotype=protein_coding;external_name=C_scaffold_47000010;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 59650 61140 . + . ID=Physo157464;Parent=Physo157464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 59650 60174 . + 0 ID=Physo157464;Parent=Physo157464;rank=1 scaffold_47 . exon 59650 60174 . + . ID=Physo157464.1;Parent=Physo157464;constitutive=1;rank=1 scaffold_47 . CDS 60399 60776 . + 0 ID=Physo157464;Parent=Physo157464;rank=2 scaffold_47 . exon 60399 60776 . + . ID=Physo157464.2;Parent=Physo157464;constitutive=1;rank=2 scaffold_47 . CDS 60902 60989 . + 0 ID=Physo157464;Parent=Physo157464;rank=3 scaffold_47 . exon 60902 60989 . + . ID=Physo157464.3;Parent=Physo157464;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 61097 61140 . + 0 ID=Physo157464;Parent=Physo157464;rank=4 scaffold_47 . exon 61097 61140 . + . ID=Physo157464.4;Parent=Physo157464;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 . biological_region 69989 69994 0.999 - . logic_name=eponine scaffold_47 . biological_region 69996 69999 0.999 + . logic_name=eponine scaffold_47 . biological_region 70254 70262 0.999 - . logic_name=eponine scaffold_47 . biological_region 70507 70508 0.999 - . logic_name=eponine scaffold_47 . repeat_region 70707 71975 . ? . description=trf scaffold_47 . biological_region 77607 77607 0.999 - . logic_name=eponine scaffold_47 . biological_region 78335 78336 0.999 - . logic_name=eponine scaffold_47 . biological_region 78677 78681 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 70707 72112 . + . ID=Physo108964;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_470003;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 70707 72112 . + . ID=Physo108964;Parent=Physo108964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 70707 72112 . + . ID=Physo108964.1;Parent=Physo108964;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 70835 71980 . + 0 ID=Physo108964;Parent=Physo108964;rank=1 scaffold_47 . exon 70158 70302 . - . ID=Physo136615.2;Parent=Physo136615;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . exon 70369 70400 . - . ID=Physo136615.1;Parent=Physo136615;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 72286 73248 . + . ID=Physo136617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470031;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 72286 73248 . + . ID=Physo136617;Parent=Physo136617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 72286 72655 . + 0 ID=Physo136617;Parent=Physo136617;rank=1 scaffold_47 . exon 72286 72655 . + . ID=Physo136617.1;Parent=Physo136617;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 72767 72918 . + 0 ID=Physo136617;Parent=Physo136617;rank=2 scaffold_47 . exon 72767 72918 . + . ID=Physo136617.2;Parent=Physo136617;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 72995 73108 . + 0 ID=Physo136617;Parent=Physo136617;rank=3 scaffold_47 . exon 72995 73108 . + . ID=Physo136617.3;Parent=Physo136617;constitutive=1;rank=3 scaffold_47 . CDS 73204 73248 . + 0 ID=Physo136617;Parent=Physo136617;rank=4 scaffold_47 . exon 73204 73248 . + . ID=Physo136617.4;Parent=Physo136617;constitutive=1;rank=4 scaffold_47 ensembl protein_coding_gene 76807 80763 . - . ID=Physo136618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470032;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 76807 80763 . - . ID=Physo136618;Parent=Physo136618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 76807 77784 . - 0 ID=Physo136618;Parent=Physo136618;rank=4 scaffold_47 . exon 76807 77784 . - . ID=Physo136618.4;Parent=Physo136618;constitutive=1;rank=4 scaffold_47 . CDS 77899 78219 . - 0 ID=Physo136618;Parent=Physo136618;rank=3 scaffold_47 . exon 77899 78219 . - . ID=Physo136618.3;Parent=Physo136618;constitutive=1;rank=3 scaffold_47 . CDS 78296 78430 . - 0 ID=Physo136618;Parent=Physo136618;rank=2 scaffold_47 . exon 78296 78430 . - . ID=Physo136618.2;Parent=Physo136618;constitutive=1;rank=2 scaffold_47 . CDS 78511 80763 . - 0 ID=Physo136618;Parent=Physo136618;rank=1 scaffold_47 . exon 78511 80763 . - . ID=Physo136618.1;Parent=Physo136618;constitutive=1;rank=1 scaffold_47 . repeat_region 83820 83857 . ? . description=dust scaffold_47 . repeat_region 85266 85273 . ? . description=dust scaffold_47 . repeat_region 86159 86166 . ? . description=dust scaffold_47 ensembl protein_coding_gene 83000 84020 . - . ID=Physo136619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470033;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 83000 84020 . - . ID=Physo136619;Parent=Physo136619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 83000 83815 . - 0 ID=Physo136619;Parent=Physo136619;rank=2 scaffold_47 . exon 83000 83815 . - . ID=Physo136619.2;Parent=Physo136619;constitutive=1;rank=2 scaffold_47 . CDS 83954 84013 . - 0 ID=Physo136619;Parent=Physo136619;rank=1 scaffold_47 . exon 83954 84020 . - . ID=Physo136619.1;Parent=Physo136619;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 . biological_region 89158 89162 0.999 - . logic_name=eponine scaffold_47 . biological_region 89165 89169 0.999 - . logic_name=eponine scaffold_47 . biological_region 89471 89473 0.999 + . logic_name=eponine scaffold_47 . repeat_region 89735 89761 . ? . description=trf scaffold_47 . biological_region 90661 90663 0.999 - . logic_name=eponine scaffold_47 . biological_region 93998 94004 0.999 - . logic_name=eponine scaffold_47 . repeat_region 94803 94836 . ? . description=trf scaffold_47 . repeat_region 94937 94958 . ? . description=trf scaffold_47 . biological_region 95320 95320 0.999 + . logic_name=eponine scaffold_47 . biological_region 95458 95463 0.999 - . logic_name=eponine scaffold_47 . biological_region 95464 95467 0.999 + . logic_name=eponine scaffold_47 . biological_region 95535 95540 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 89908 90781 . + . ID=Physo136620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470034;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 89908 90781 . + . ID=Physo136620;Parent=Physo136620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 89908 90376 . + 0 ID=Physo136620;Parent=Physo136620;rank=1 scaffold_47 . exon 89908 90376 . + . ID=Physo136620.1;Parent=Physo136620;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 90442 90661 . + 0 ID=Physo136620;Parent=Physo136620;rank=2 scaffold_47 . exon 90442 90661 . + . ID=Physo136620.2;Parent=Physo136620;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_47 . CDS 90772 90781 . + 0 ID=Physo136620;Parent=Physo136620;rank=3 scaffold_47 . exon 90772 90781 . + . ID=Physo136620.3;Parent=Physo136620;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 ensembl protein_coding_gene 93689 95608 . - . ID=Physo136621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470035;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 93689 95608 . - . ID=Physo136621;Parent=Physo136621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 93689 95608 . - 0 ID=Physo136621;Parent=Physo136621;rank=1 scaffold_47 . exon 93689 95608 . - . ID=Physo136621.1;Parent=Physo136621;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 96758 102973 . - . ID=Physo136622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470036;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 96758 102973 . - . ID=Physo136622;Parent=Physo136622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 96758 102973 . - 0 ID=Physo136622;Parent=Physo136622;rank=1 scaffold_47 . exon 96758 102973 . - . ID=Physo136622.1;Parent=Physo136622;constitutive=1;rank=1 scaffold_47 . repeat_region 107203 109643 . ? . description=dust scaffold_47 ensembl protein_coding_gene 103352 104147 . - . ID=Physo136623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470037;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 103352 104147 . - . ID=Physo136623;Parent=Physo136623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 103352 103492 . - 0 ID=Physo136623;Parent=Physo136623;rank=3 scaffold_47 . exon 103352 103492 . - . ID=Physo136623.3;Parent=Physo136623;constitutive=1;rank=3 scaffold_47 . CDS 103566 103697 . - 0 ID=Physo136623;Parent=Physo136623;rank=2 scaffold_47 . exon 103566 103697 . - . ID=Physo136623.2;Parent=Physo136623;constitutive=1;rank=2 scaffold_47 . CDS 103773 104147 . - 0 ID=Physo136623;Parent=Physo136623;rank=1 scaffold_47 . exon 103773 104147 . - . ID=Physo136623.1;Parent=Physo136623;constitutive=1;rank=1 scaffold_47 . biological_region 112282 112283 0.999 + . logic_name=eponine scaffold_47 . biological_region 115427 115430 0.999 - . logic_name=eponine scaffold_47 . biological_region 115480 115487 0.999 + . logic_name=eponine scaffold_47 . biological_region 115514 115515 0.999 + . logic_name=eponine scaffold_47 . biological_region 115555 115556 0.999 - . logic_name=eponine scaffold_47 . biological_region 115565 115567 0.999 + . logic_name=eponine scaffold_47 . biological_region 116325 116327 0.999 - . logic_name=eponine scaffold_47 . biological_region 117244 117247 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 116140 116649 . + . ID=Physo117954;biotype=protein_coding;external_name=estExt_Genewise1.C_470120;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 116140 116649 . + . ID=Physo117954;Parent=Physo117954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 116140 116649 . + 0 ID=Physo117954;Parent=Physo117954;rank=1 scaffold_47 . exon 116140 116649 . + . ID=Physo117954.1;Parent=Physo117954;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 111809 112510 . - . ID=Physo136624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470038;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 111809 112510 . - . ID=Physo136624;Parent=Physo136624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 111809 112510 . - 0 ID=Physo136624;Parent=Physo136624;rank=1 scaffold_47 . exon 111809 112510 . - . ID=Physo136624.1;Parent=Physo136624;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 113908 115821 . - . ID=Physo136625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470039;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 113908 115821 . - . ID=Physo136625;Parent=Physo136625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 113908 114297 . - 0 ID=Physo136625;Parent=Physo136625;rank=5 scaffold_47 . exon 113908 114297 . - . ID=Physo136625.5;Parent=Physo136625;constitutive=1;rank=5 scaffold_47 . CDS 114366 115186 . - 0 ID=Physo136625;Parent=Physo136625;rank=4 scaffold_47 . exon 114366 115186 . - . ID=Physo136625.4;Parent=Physo136625;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 115274 115406 . - 0 ID=Physo136625;Parent=Physo136625;rank=3 scaffold_47 . exon 115274 115406 . - . ID=Physo136625.3;Parent=Physo136625;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 115500 115661 . - 0 ID=Physo136625;Parent=Physo136625;rank=2 scaffold_47 . exon 115500 115661 . - . ID=Physo136625.2;Parent=Physo136625;constitutive=1;rank=2 scaffold_47 . CDS 115744 115821 . - 0 ID=Physo136625;Parent=Physo136625;rank=1 scaffold_47 . exon 115744 115821 . - . ID=Physo136625.1;Parent=Physo136625;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 116914 121368 . + . ID=Physo136627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470041;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 116914 121368 . + . ID=Physo136627;Parent=Physo136627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 116914 121368 . + 0 ID=Physo136627;Parent=Physo136627;rank=1 scaffold_47 . exon 116914 121368 . + . ID=Physo136627.1;Parent=Physo136627;constitutive=1;rank=1 scaffold_47 . repeat_region 124955 125012 . ? . description=dust scaffold_47 . repeat_region 126809 126816 . ? . description=dust scaffold_47 . repeat_region 126835 126860 . ? . description=dust scaffold_47 ensembl protein_coding_gene 121462 121869 . - . ID=Physo136628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470042;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 121462 121869 . - . ID=Physo136628;Parent=Physo136628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 121462 121869 . - 0 ID=Physo136628;Parent=Physo136628;rank=1 scaffold_47 . exon 121462 121869 . - . ID=Physo136628.1;Parent=Physo136628;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 122220 123903 . - . ID=Physo136629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470043;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 122220 123903 . - . ID=Physo136629;Parent=Physo136629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 122220 122315 . - 0 ID=Physo136629;Parent=Physo136629;rank=2 scaffold_47 . exon 122220 122315 . - . ID=Physo136629.2;Parent=Physo136629;constitutive=1;rank=2 scaffold_47 . CDS 122416 123903 . - 0 ID=Physo136629;Parent=Physo136629;rank=1 scaffold_47 . exon 122416 123903 . - . ID=Physo136629.1;Parent=Physo136629;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 124120 125444 . + . ID=Physo136630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470044;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 124120 125444 . + . ID=Physo136630;Parent=Physo136630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 124120 124269 . + 0 ID=Physo136630;Parent=Physo136630;rank=1 scaffold_47 . exon 124120 124269 . + . ID=Physo136630.1;Parent=Physo136630;constitutive=1;rank=1 scaffold_47 . CDS 124383 124423 . + 0 ID=Physo136630;Parent=Physo136630;rank=2 scaffold_47 . exon 124383 124423 . + . ID=Physo136630.2;Parent=Physo136630;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_47 . CDS 124492 124621 . + 0 ID=Physo136630;Parent=Physo136630;rank=3 scaffold_47 . exon 124492 124621 . + . ID=Physo136630.3;Parent=Physo136630;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 124697 124779 . + 0 ID=Physo136630;Parent=Physo136630;rank=4 scaffold_47 . exon 124697 124779 . + . ID=Physo136630.4;Parent=Physo136630;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_47 . CDS 124847 125444 . + 0 ID=Physo136630;Parent=Physo136630;rank=5 scaffold_47 . exon 124847 125444 . + . ID=Physo136630.5;Parent=Physo136630;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 ensembl protein_coding_gene 125736 126731 . + . ID=Physo136631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470045;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 125736 126731 . + . ID=Physo136631;Parent=Physo136631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 125736 126731 . + 0 ID=Physo136631;Parent=Physo136631;rank=1 scaffold_47 . exon 125736 126731 . + . ID=Physo136631.1;Parent=Physo136631;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 126735 127381 . - . ID=Physo136632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470046;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 126735 127381 . - . ID=Physo136632;Parent=Physo136632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 126735 127381 . - . ID=Physo136632.1;Parent=Physo136632;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_47 . CDS 126866 127381 . - 0 ID=Physo136632;Parent=Physo136632;rank=1 scaffold_47 ensembl protein_coding_gene 127697 128097 . + . ID=Physo136633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470047;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 127697 128097 . + . ID=Physo136633;Parent=Physo136633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 127697 127929 . + 0 ID=Physo136633;Parent=Physo136633;rank=1 scaffold_47 . exon 127697 127929 . + . ID=Physo136633.1;Parent=Physo136633;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 128007 128097 . + 0 ID=Physo136633;Parent=Physo136633;rank=2 scaffold_47 . exon 128007 128097 . + . ID=Physo136633.2;Parent=Physo136633;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . repeat_region 130712 130747 . ? . description=trf scaffold_47 . biological_region 131296 131299 0.999 - . logic_name=eponine scaffold_47 . biological_region 133190 133192 0.999 - . logic_name=eponine scaffold_47 . biological_region 133242 133248 0.999 + . logic_name=eponine scaffold_47 . biological_region 133409 133411 0.999 - . logic_name=eponine scaffold_47 . biological_region 133458 133458 0.999 - . logic_name=eponine scaffold_47 . biological_region 133875 133880 0.999 + . logic_name=eponine scaffold_47 . biological_region 133899 133901 0.999 + . logic_name=eponine scaffold_47 . biological_region 133935 133938 0.999 + . logic_name=eponine scaffold_47 . biological_region 134188 134194 0.999 + . logic_name=eponine scaffold_47 . biological_region 134239 134240 0.999 - . logic_name=eponine scaffold_47 . biological_region 134267 134275 0.999 + . logic_name=eponine scaffold_47 . biological_region 134647 134648 0.999 + . logic_name=eponine scaffold_47 . biological_region 134698 134700 0.999 + . logic_name=eponine scaffold_47 . biological_region 134723 134726 0.999 + . logic_name=eponine scaffold_47 . biological_region 134783 134784 0.999 - . logic_name=eponine scaffold_47 . biological_region 134795 134800 0.999 + . logic_name=eponine scaffold_47 . biological_region 134963 134963 0.999 - . logic_name=eponine scaffold_47 . repeat_region 136054 136073 . ? . description=trf scaffold_47 . repeat_region 136226 136275 . ? . description=trf scaffold_47 . biological_region 137132 137132 0.999 + . logic_name=eponine scaffold_47 . biological_region 137427 137431 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 129668 131276 . - . ID=Physo136634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470048;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 129668 131276 . - . ID=Physo136634;Parent=Physo136634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 129668 130114 . - 0 ID=Physo136634;Parent=Physo136634;rank=2 scaffold_47 . exon 129668 130114 . - . ID=Physo136634.2;Parent=Physo136634;constitutive=1;rank=2 scaffold_47 . CDS 130200 131276 . - 0 ID=Physo136634;Parent=Physo136634;rank=1 scaffold_47 . exon 130200 131276 . - . ID=Physo136634.1;Parent=Physo136634;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 132214 133419 . - . ID=Physo136635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470049;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 132214 133419 . - . ID=Physo136635;Parent=Physo136635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 132214 133419 . - 0 ID=Physo136635;Parent=Physo136635;rank=1 scaffold_47 . exon 132214 133419 . - . ID=Physo136635.1;Parent=Physo136635;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 133907 134674 . - . ID=Physo136636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470050;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 133907 134674 . - . ID=Physo136636;Parent=Physo136636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 133907 134674 . - 0 ID=Physo136636;Parent=Physo136636;rank=1 scaffold_47 . exon 133907 134674 . - . ID=Physo136636.1;Parent=Physo136636;constitutive=1;rank=1 scaffold_47 . repeat_region 139617 139659 . ? . description=dust scaffold_47 . repeat_region 142282 142289 . ? . description=dust scaffold_47 . repeat_region 143142 143151 . ? . description=dust scaffold_47 ensembl protein_coding_gene 138593 140466 . + . ID=Physo136637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470051;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 138593 140466 . + . ID=Physo136637;Parent=Physo136637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 138593 139116 . + 0 ID=Physo136637;Parent=Physo136637;rank=1 scaffold_47 . exon 138593 139116 . + . ID=Physo136637.1;Parent=Physo136637;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 139211 139323 . + 0 ID=Physo136637;Parent=Physo136637;rank=2 scaffold_47 . exon 139211 139323 . + . ID=Physo136637.2;Parent=Physo136637;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 139397 140397 . + 0 ID=Physo136637;Parent=Physo136637;rank=3 scaffold_47 . exon 139397 140466 . + . ID=Physo136637.3;Parent=Physo136637;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_47 ensembl protein_coding_gene 140545 141267 . + . ID=Physo136638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470052;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 140545 141267 . + . ID=Physo136638;Parent=Physo136638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 140545 140634 . + . ID=Physo136638.1;Parent=Physo136638;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 140560 140634 . + 0 ID=Physo136638;Parent=Physo136638;rank=1 scaffold_47 . CDS 140714 140953 . + 0 ID=Physo136638;Parent=Physo136638;rank=2 scaffold_47 . exon 140714 141267 . + . ID=Physo136638.2;Parent=Physo136638;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_47 ensembl protein_coding_gene 143521 146497 . - . ID=Physo136639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470053;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 143521 146497 . - . ID=Physo136639;Parent=Physo136639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 143521 143634 . - 0 ID=Physo136639;Parent=Physo136639;rank=4 scaffold_47 . exon 143521 143634 . - . ID=Physo136639.4;Parent=Physo136639;constitutive=1;rank=4 scaffold_47 . CDS 143706 146030 . - 0 ID=Physo136639;Parent=Physo136639;rank=3 scaffold_47 . exon 143706 146030 . - . ID=Physo136639.3;Parent=Physo136639;constitutive=1;rank=3 scaffold_47 . CDS 146105 146249 . - 0 ID=Physo136639;Parent=Physo136639;rank=2 scaffold_47 . exon 146105 146249 . - . ID=Physo136639.2;Parent=Physo136639;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 146307 146497 . - 0 ID=Physo136639;Parent=Physo136639;rank=1 scaffold_47 . exon 146307 146497 . - . ID=Physo136639.1;Parent=Physo136639;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . biological_region 148017 148017 0.999 + . logic_name=eponine scaffold_47 . biological_region 148122 148127 0.999 + . logic_name=eponine scaffold_47 . biological_region 148248 148252 0.999 - . logic_name=eponine scaffold_47 . biological_region 151745 151747 0.999 + . logic_name=eponine scaffold_47 . biological_region 152282 152282 0.999 + . logic_name=eponine scaffold_47 . repeat_region 152475 152511 . ? . description=trf scaffold_47 ensembl protein_coding_gene 151759 152825 . + . ID=Physo108965;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_470004;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 151759 152825 . + . ID=Physo108965;Parent=Physo108965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 151759 152576 . + . ID=Physo108965.1;Parent=Physo108965;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 151773 152576 . + 0 ID=Physo108965;Parent=Physo108965;rank=1 scaffold_47 . CDS 152649 152825 . + 0 ID=Physo108965;Parent=Physo108965;rank=2 scaffold_47 . exon 152649 152825 . + . ID=Physo108965.2;Parent=Physo108965;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 148071 150272 . + . ID=Physo136640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470054;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 148071 150272 . + . ID=Physo136640;Parent=Physo136640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 148071 148383 . + 0 ID=Physo136640;Parent=Physo136640;rank=1 scaffold_47 . exon 148071 148383 . + . ID=Physo136640.1;Parent=Physo136640;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 148464 148640 . + 0 ID=Physo136640;Parent=Physo136640;rank=2 scaffold_47 . exon 148464 148640 . + . ID=Physo136640.2;Parent=Physo136640;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 148723 150101 . + 0 ID=Physo136640;Parent=Physo136640;rank=3 scaffold_47 . exon 148723 150272 . + . ID=Physo136640.3;Parent=Physo136640;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_47 ensembl protein_coding_gene 150464 151602 . - . ID=Physo136641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470055;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 150464 151602 . - . ID=Physo136641;Parent=Physo136641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 150464 150765 . - 0 ID=Physo136641;Parent=Physo136641;rank=3 scaffold_47 . exon 150464 150765 . - . ID=Physo136641.3;Parent=Physo136641;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 150864 150977 . - 0 ID=Physo136641;Parent=Physo136641;rank=2 scaffold_47 . exon 150864 150977 . - . ID=Physo136641.2;Parent=Physo136641;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 151251 151602 . - 0 ID=Physo136641;Parent=Physo136641;rank=1 scaffold_47 . exon 151251 151602 . - . ID=Physo136641.1;Parent=Physo136641;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 ensembl protein_coding_gene 153214 157473 . + . ID=Physo136643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470057;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 153214 157473 . + . ID=Physo136643;Parent=Physo136643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 153214 157473 . + 0 ID=Physo136643;Parent=Physo136643;rank=1 scaffold_47 . exon 153214 157473 . + . ID=Physo136643.1;Parent=Physo136643;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 157571 158050 . - . ID=Physo136644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470058;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 157571 158050 . - . ID=Physo136644;Parent=Physo136644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 157571 158050 . - 0 ID=Physo136644;Parent=Physo136644;rank=1 scaffold_47 . exon 157571 158050 . - . ID=Physo136644.1;Parent=Physo136644;constitutive=1;rank=1 scaffold_47 . repeat_region 162413 162420 . ? . description=dust scaffold_47 . repeat_region 163627 163770 . + . description=(CAG)n scaffold_47 . repeat_region 164792 164935 . + . description=(CTG)n scaffold_47 . repeat_region 165190 165239 . ? . description=dust scaffold_47 . repeat_region 166502 166509 . ? . description=dust scaffold_47 . repeat_region 167498 171191 . ? . description=dust scaffold_47 ensembl protein_coding_gene 158762 159359 . - . ID=Physo136645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470059;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 158762 159359 . - . ID=Physo136645;Parent=Physo136645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 158762 159359 . - . ID=Physo136645.1;Parent=Physo136645;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 158839 159333 . - 0 ID=Physo136645;Parent=Physo136645;rank=1 scaffold_47 ensembl protein_coding_gene 160459 160968 . - . ID=Physo136646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470060;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 160459 160968 . - . ID=Physo136646;Parent=Physo136646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 160459 160968 . - 0 ID=Physo136646;Parent=Physo136646;rank=1 scaffold_47 . exon 160459 160968 . - . ID=Physo136646.1;Parent=Physo136646;constitutive=1;rank=1 scaffold_47 . repeat_region 172188 172208 . ? . description=trf scaffold_47 . repeat_region 176319 176359 . ? . description=trf scaffold_47 . biological_region 176490 176491 0.999 + . logic_name=eponine scaffold_47 . biological_region 176586 176589 0.999 + . logic_name=eponine scaffold_47 . biological_region 176977 176978 0.999 + . logic_name=eponine scaffold_47 . biological_region 177024 177024 0.999 - . logic_name=eponine scaffold_47 . biological_region 177119 177122 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 174276 175260 . + . ID=Physo136647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470061;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 174276 175260 . + . ID=Physo136647;Parent=Physo136647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 174276 174781 . + 0 ID=Physo136647;Parent=Physo136647;rank=1 scaffold_47 . exon 174276 174781 . + . ID=Physo136647.1;Parent=Physo136647;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 175143 175260 . + 0 ID=Physo136647;Parent=Physo136647;rank=2 scaffold_47 . exon 175143 175260 . + . ID=Physo136647.2;Parent=Physo136647;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 ensembl protein_coding_gene 176270 184025 . + . ID=Physo136648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470062;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 176270 184025 . + . ID=Physo136648;Parent=Physo136648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 176270 177192 . + 0 ID=Physo136648;Parent=Physo136648;rank=1 scaffold_47 . exon 176270 177192 . + . ID=Physo136648.1;Parent=Physo136648;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 177238 178061 . + 0 ID=Physo136648;Parent=Physo136648;rank=2 scaffold_47 . exon 177238 178061 . + . ID=Physo136648.2;Parent=Physo136648;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 178196 178428 . + 0 ID=Physo136648;Parent=Physo136648;rank=3 scaffold_47 . CDS 178498 179363 . + 0 ID=Physo136648;Parent=Physo136648;rank=4 scaffold_47 . CDS 179419 180393 . + 0 ID=Physo136648;Parent=Physo136648;rank=5 scaffold_47 . CDS 180650 180890 . + 0 ID=Physo136648;Parent=Physo136648;rank=6 scaffold_47 . CDS 181146 181714 . + 0 ID=Physo136648;Parent=Physo136648;rank=7 scaffold_47 . CDS 181759 182872 . + 0 ID=Physo136648;Parent=Physo136648;rank=8 scaffold_47 . CDS 183014 183903 . + 0 ID=Physo136648;Parent=Physo136648;rank=9 scaffold_47 . CDS 183935 184025 . + 0 ID=Physo136648;Parent=Physo136648;rank=10 scaffold_47 . repeat_region 184902 184909 . ? . description=dust scaffold_47 . repeat_region 186914 186936 . ? . description=dust scaffold_47 . exon 178196 178428 . + . ID=Physo136648.3;Parent=Physo136648;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . exon 178498 179363 . + . ID=Physo136648.4;Parent=Physo136648;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_47 . exon 179419 180393 . + . ID=Physo136648.5;Parent=Physo136648;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_47 . exon 180650 180890 . + . ID=Physo136648.6;Parent=Physo136648;constitutive=1;ensembl_phase=2;rank=6 scaffold_47 . exon 181146 181714 . + . ID=Physo136648.7;Parent=Physo136648;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_47 . exon 181759 182872 . + . ID=Physo136648.8;Parent=Physo136648;constitutive=1;ensembl_phase=2;rank=8 scaffold_47 . exon 183014 183903 . + . ID=Physo136648.9;Parent=Physo136648;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_47 . exon 183935 184025 . + . ID=Physo136648.10;Parent=Physo136648;constitutive=1;ensembl_phase=2;rank=10 scaffold_47 ensembl protein_coding_gene 185131 185506 . + . ID=Physo136649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470063;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 185131 185506 . + . ID=Physo136649;Parent=Physo136649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 185131 185301 . + 0 ID=Physo136649;Parent=Physo136649;rank=1 scaffold_47 . exon 185131 185301 . + . ID=Physo136649.1;Parent=Physo136649;constitutive=1;rank=1 scaffold_47 . CDS 185342 185506 . + 0 ID=Physo136649;Parent=Physo136649;rank=2 scaffold_47 . exon 185342 185506 . + . ID=Physo136649.2;Parent=Physo136649;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 186138 186632 . + . ID=Physo136650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470064;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 186138 186632 . + . ID=Physo136650;Parent=Physo136650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 186138 186632 . + 0 ID=Physo136650;Parent=Physo136650;rank=1 scaffold_47 . exon 186138 186632 . + . ID=Physo136650.1;Parent=Physo136650;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 186844 189735 . + . ID=Physo136651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470065;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 186844 189735 . + . ID=Physo136651;Parent=Physo136651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 186844 189735 . + 0 ID=Physo136651;Parent=Physo136651;rank=1 scaffold_47 . exon 186844 189735 . + . ID=Physo136651.1;Parent=Physo136651;constitutive=1;rank=1 scaffold_47 . biological_region 197228 197234 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 196444 198871 . + . ID=Physo136652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470066;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 196444 198871 . + . ID=Physo136652;Parent=Physo136652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 196444 197430 . + 0 ID=Physo136652;Parent=Physo136652;rank=1 scaffold_47 . exon 196444 197430 . + . ID=Physo136652.1;Parent=Physo136652;constitutive=1;rank=1 scaffold_47 . CDS 197717 198871 . + 0 ID=Physo136652;Parent=Physo136652;rank=2 scaffold_47 ensembl protein_coding_gene 205600 207594 . + . ID=Physo117988;biotype=protein_coding;external_name=estExt_Genewise1.C_470154;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 205600 207594 . + . ID=Physo117988;Parent=Physo117988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 205600 206127 . + . ID=Physo117988.1;Parent=Physo117988;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 205693 206127 . + 0 ID=Physo117988;Parent=Physo117988;rank=1 scaffold_47 . CDS 206195 207394 . + 0 ID=Physo117988;Parent=Physo117988;rank=2 scaffold_47 . exon 206195 207594 . + . ID=Physo117988.2;Parent=Physo117988;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_47 . exon 197717 198871 . + . ID=Physo136652.2;Parent=Physo136652;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 199156 201516 . - . ID=Physo136653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470067;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 199156 201516 . - . ID=Physo136653;Parent=Physo136653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 199156 201516 . - 0 ID=Physo136653;Parent=Physo136653;rank=1 scaffold_47 . exon 199156 201516 . - . ID=Physo136653.1;Parent=Physo136653;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 202713 205073 . + . ID=Physo136654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470068;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 202713 205073 . + . ID=Physo136654;Parent=Physo136654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 202713 205073 . + 0 ID=Physo136654;Parent=Physo136654;rank=1 scaffold_47 . exon 202713 205073 . + . ID=Physo136654.1;Parent=Physo136654;constitutive=1;rank=1 scaffold_47 . biological_region 207308 207311 0.999 + . logic_name=eponine scaffold_47 . biological_region 207384 207386 0.999 - . logic_name=eponine scaffold_47 . biological_region 207400 207402 0.999 - . logic_name=eponine scaffold_47 . biological_region 210343 210346 0.999 - . logic_name=eponine scaffold_47 . biological_region 210452 210455 0.999 + . logic_name=eponine scaffold_47 . biological_region 210782 210784 0.999 - . logic_name=eponine scaffold_47 . biological_region 211833 211835 0.999 + . logic_name=eponine scaffold_47 . biological_region 211929 211931 0.999 - . logic_name=eponine scaffold_47 . biological_region 212031 212034 0.999 + . logic_name=eponine scaffold_47 . biological_region 212088 212093 0.999 - . logic_name=eponine scaffold_47 . biological_region 212128 212129 0.999 - . logic_name=eponine scaffold_47 . biological_region 213623 213625 0.999 + . logic_name=eponine scaffold_47 . repeat_region 216228 216297 . ? . description=trf scaffold_47 . repeat_region 216730 216790 . ? . description=trf scaffold_47 . repeat_region 216740 216793 . ? . description=trf scaffold_47 ensembl protein_coding_gene 207778 209400 . + . ID=Physo108967;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_470006;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 207778 209400 . + . ID=Physo108967;Parent=Physo108967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 207778 207857 . + . ID=Physo108967.1;Parent=Physo108967;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 207851 207857 . + 0 ID=Physo108967;Parent=Physo108967;rank=1 scaffold_47 . CDS 207926 209226 . + 0 ID=Physo108967;Parent=Physo108967;rank=2 scaffold_47 . exon 207926 209400 . + . ID=Physo108967.2;Parent=Physo108967;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_47 ensembl protein_coding_gene 209387 210054 . - . ID=Physo108968;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_470007;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 209387 210054 . - . ID=Physo108968;Parent=Physo108968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 209387 209785 . - . ID=Physo108968.2;Parent=Physo108968;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_47 . CDS 209579 209785 . - 0 ID=Physo108968;Parent=Physo108968;rank=2 scaffold_47 . CDS 209872 210012 . - 0 ID=Physo108968;Parent=Physo108968;rank=1 scaffold_47 . exon 209872 210054 . - . ID=Physo108968.1;Parent=Physo108968;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 ensembl protein_coding_gene 210201 211372 . + . ID=Physo136659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470073;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 210201 211372 . + . ID=Physo136659;Parent=Physo136659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 210201 210899 . + 0 ID=Physo136659;Parent=Physo136659;rank=1 scaffold_47 . exon 210201 210899 . + . ID=Physo136659.1;Parent=Physo136659;constitutive=1;rank=1 scaffold_47 . CDS 210996 211106 . + 0 ID=Physo136659;Parent=Physo136659;rank=2 scaffold_47 . exon 210996 211106 . + . ID=Physo136659.2;Parent=Physo136659;constitutive=1;rank=2 scaffold_47 . CDS 211193 211372 . + 0 ID=Physo136659;Parent=Physo136659;rank=3 scaffold_47 . exon 211193 211372 . + . ID=Physo136659.3;Parent=Physo136659;constitutive=1;rank=3 scaffold_47 ensembl protein_coding_gene 211869 212535 . + . ID=Physo136660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470074;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 211869 212535 . + . ID=Physo136660;Parent=Physo136660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 211869 212535 . + . ID=Physo136660.1;Parent=Physo136660;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 211977 212393 . + 0 ID=Physo136660;Parent=Physo136660;rank=1 scaffold_47 ensembl protein_coding_gene 213569 215774 . + . ID=Physo136661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470075;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 213569 215774 . + . ID=Physo136661;Parent=Physo136661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 213569 213633 . + 0 ID=Physo136661;Parent=Physo136661;rank=1 scaffold_47 . exon 213569 213633 . + . ID=Physo136661.1;Parent=Physo136661;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 213660 213769 . + 0 ID=Physo136661;Parent=Physo136661;rank=2 scaffold_47 . exon 213660 213769 . + . ID=Physo136661.2;Parent=Physo136661;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 213961 214517 . + 0 ID=Physo136661;Parent=Physo136661;rank=3 scaffold_47 . exon 213961 214517 . + . ID=Physo136661.3;Parent=Physo136661;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 214590 214772 . + 0 ID=Physo136661;Parent=Physo136661;rank=4 scaffold_47 . exon 214590 214772 . + . ID=Physo136661.4;Parent=Physo136661;constitutive=1;rank=4 scaffold_47 . CDS 214798 215078 . + 0 ID=Physo136661;Parent=Physo136661;rank=5 scaffold_47 . exon 214798 215078 . + . ID=Physo136661.5;Parent=Physo136661;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_47 . CDS 215154 215743 . + 0 ID=Physo136661;Parent=Physo136661;rank=6 scaffold_47 . exon 215154 215743 . + . ID=Physo136661.6;Parent=Physo136661;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_47 . CDS 215764 215774 . + 0 ID=Physo136661;Parent=Physo136661;rank=7 scaffold_47 . exon 215764 215774 . + . ID=Physo136661.7;Parent=Physo136661;constitutive=1;ensembl_phase=1;rank=7 scaffold_47 . repeat_region 225336 225347 . ? . description=dust scaffold_47 ensembl protein_coding_gene 218823 219748 . + . ID=Physo136662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470076;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 218823 219748 . + . ID=Physo136662;Parent=Physo136662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 218823 219139 . + 0 ID=Physo136662;Parent=Physo136662;rank=1 scaffold_47 . exon 218823 219139 . + . ID=Physo136662.1;Parent=Physo136662;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 219242 219558 . + 0 ID=Physo136662;Parent=Physo136662;rank=2 scaffold_47 . exon 219242 219558 . + . ID=Physo136662.2;Parent=Physo136662;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 219600 219748 . + 0 ID=Physo136662;Parent=Physo136662;rank=3 scaffold_47 . exon 219600 219748 . + . ID=Physo136662.3;Parent=Physo136662;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 ensembl protein_coding_gene 223489 224563 . - . ID=Physo136663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470077;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 223489 224563 . - . ID=Physo136663;Parent=Physo136663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 223489 223837 . - 0 ID=Physo136663;Parent=Physo136663;rank=5 scaffold_47 . exon 223489 223837 . - . ID=Physo136663.5;Parent=Physo136663;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 . CDS 223961 223965 . - 0 ID=Physo136663;Parent=Physo136663;rank=4 scaffold_47 . exon 223961 223965 . - . ID=Physo136663.4;Parent=Physo136663;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_47 . CDS 224000 224155 . - 0 ID=Physo136663;Parent=Physo136663;rank=3 scaffold_47 . exon 224000 224155 . - . ID=Physo136663.3;Parent=Physo136663;constitutive=1;rank=3 scaffold_47 . CDS 224243 224383 . - 0 ID=Physo136663;Parent=Physo136663;rank=2 scaffold_47 . exon 224243 224383 . - . ID=Physo136663.2;Parent=Physo136663;constitutive=1;rank=2 scaffold_47 . CDS 224477 224563 . - 0 ID=Physo136663;Parent=Physo136663;rank=1 scaffold_47 . exon 224477 224563 . - . ID=Physo136663.1;Parent=Physo136663;constitutive=1;rank=1 scaffold_47 . biological_region 227165 227169 0.999 + . logic_name=eponine scaffold_47 . repeat_region 227272 227305 . ? . description=trf scaffold_47 . repeat_region 227272 227307 . ? . description=trf scaffold_47 . repeat_region 227299 227342 . ? . description=trf scaffold_47 . repeat_region 227631 227788 . ? . description=trf scaffold_47 . biological_region 227942 227944 0.999 - . logic_name=eponine scaffold_47 . biological_region 230271 230271 0.999 + . logic_name=eponine scaffold_47 . biological_region 233233 233234 0.999 - . logic_name=eponine scaffold_47 . repeat_region 236278 236313 . ? . description=trf scaffold_47 ensembl protein_coding_gene 227252 227759 . - . ID=Physo136664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470078;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 227252 227759 . - . ID=Physo136664;Parent=Physo136664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 227252 227338 . - 0 ID=Physo136664;Parent=Physo136664;rank=2 scaffold_47 . exon 227252 227338 . - . ID=Physo136664.2;Parent=Physo136664;constitutive=1;rank=2 scaffold_47 . CDS 227394 227759 . - 0 ID=Physo136664;Parent=Physo136664;rank=1 scaffold_47 . exon 227394 227759 . - . ID=Physo136664.1;Parent=Physo136664;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 238731 241029 . + . ID=Physo136665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470079;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 238731 241029 . + . ID=Physo136665;Parent=Physo136665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 238731 238797 . + 0 ID=Physo136665;Parent=Physo136665;rank=1 scaffold_47 . exon 238731 238797 . + . ID=Physo136665.1;Parent=Physo136665;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 238888 239173 . + 0 ID=Physo136665;Parent=Physo136665;rank=2 scaffold_47 . exon 238888 239173 . + . ID=Physo136665.2;Parent=Physo136665;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_47 . CDS 239266 240497 . + 0 ID=Physo136665;Parent=Physo136665;rank=3 scaffold_47 . exon 239266 240497 . + . ID=Physo136665.3;Parent=Physo136665;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 240527 241029 . + 0 ID=Physo136665;Parent=Physo136665;rank=4 scaffold_47 . exon 240527 241029 . + . ID=Physo136665.4;Parent=Physo136665;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 ensembl protein_coding_gene 241539 245919 . + . ID=Physo136666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470080;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 241539 245919 . + . ID=Physo136666;Parent=Physo136666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 241539 242237 . + 0 ID=Physo136666;Parent=Physo136666;rank=1 scaffold_47 . exon 241539 242237 . + . ID=Physo136666.1;Parent=Physo136666;constitutive=1;rank=1 scaffold_47 . CDS 242349 245871 . + 0 ID=Physo136666;Parent=Physo136666;rank=2 scaffold_47 . exon 242349 245871 . + . ID=Physo136666.2;Parent=Physo136666;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 245900 245919 . + 0 ID=Physo136666;Parent=Physo136666;rank=3 scaffold_47 . exon 245900 245919 . + . ID=Physo136666.3;Parent=Physo136666;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . biological_region 246931 246935 0.999 + . logic_name=eponine scaffold_47 . biological_region 247265 247267 0.999 + . logic_name=eponine scaffold_47 . biological_region 247334 247337 0.999 - . logic_name=eponine scaffold_47 . biological_region 247370 247372 0.999 - . logic_name=eponine scaffold_47 . biological_region 247446 247448 0.999 + . logic_name=eponine scaffold_47 . biological_region 247572 247575 0.999 + . logic_name=eponine scaffold_47 . biological_region 247610 247612 0.999 - . logic_name=eponine scaffold_47 . biological_region 247647 247648 0.999 + . logic_name=eponine scaffold_47 . repeat_region 247750 247789 . ? . description=trf scaffold_47 . biological_region 247757 247765 0.999 + . logic_name=eponine scaffold_47 . repeat_region 247822 247880 . ? . description=dust scaffold_47 . biological_region 247822 247825 0.999 + . logic_name=eponine scaffold_47 . repeat_region 247824 247920 . ? . description=trf scaffold_47 . repeat_region 247839 247900 . ? . description=trf scaffold_47 . biological_region 247863 247867 0.999 + . logic_name=eponine scaffold_47 . repeat_region 247866 247920 . ? . description=trf scaffold_47 . biological_region 247883 247885 0.999 + . logic_name=eponine scaffold_47 . biological_region 247903 247905 0.999 + . logic_name=eponine scaffold_47 . biological_region 247913 247925 0.999 - . logic_name=eponine scaffold_47 . biological_region 247932 247938 0.999 + . logic_name=eponine scaffold_47 . biological_region 247964 247965 0.999 - . logic_name=eponine scaffold_47 . biological_region 247980 247986 0.999 - . logic_name=eponine scaffold_47 . biological_region 248018 248021 0.999 + . logic_name=eponine scaffold_47 . biological_region 248044 248049 0.999 - . logic_name=eponine scaffold_47 . biological_region 248197 248202 0.999 + . logic_name=eponine scaffold_47 . biological_region 248232 248232 0.999 + . logic_name=eponine scaffold_47 . biological_region 248235 248236 0.999 + . logic_name=eponine scaffold_47 . biological_region 248539 248541 0.999 + . logic_name=eponine scaffold_47 . biological_region 248611 248614 0.999 + . logic_name=eponine scaffold_47 . biological_region 248633 248638 0.999 + . logic_name=eponine scaffold_47 . biological_region 248661 248662 0.999 - . logic_name=eponine scaffold_47 . biological_region 248671 248678 0.999 - . logic_name=eponine scaffold_47 . biological_region 248686 248691 0.999 + . logic_name=eponine scaffold_47 . biological_region 248793 248798 0.999 - . logic_name=eponine scaffold_47 . biological_region 248875 248878 0.999 + . logic_name=eponine scaffold_47 . biological_region 248907 248912 0.999 - . logic_name=eponine scaffold_47 . biological_region 248952 248953 0.999 - . logic_name=eponine scaffold_47 . biological_region 249006 249008 0.999 + . logic_name=eponine scaffold_47 . biological_region 249062 249065 0.999 - . logic_name=eponine scaffold_47 . repeat_region 249105 249233 . ? . description=trf scaffold_47 . repeat_region 249116 249247 . ? . description=trf scaffold_47 . biological_region 249120 249124 0.999 + . logic_name=eponine scaffold_47 . biological_region 249295 249296 0.999 + . logic_name=eponine scaffold_47 . biological_region 249382 249382 0.999 - . logic_name=eponine scaffold_47 . biological_region 249458 249465 0.999 + . logic_name=eponine scaffold_47 . biological_region 249486 249492 0.999 - . logic_name=eponine scaffold_47 . biological_region 249575 249578 0.999 - . logic_name=eponine scaffold_47 . biological_region 250073 250077 0.999 + . logic_name=eponine scaffold_47 . biological_region 250204 250210 0.999 + . logic_name=eponine scaffold_47 . biological_region 250258 250260 0.999 - . logic_name=eponine scaffold_47 . biological_region 250298 250300 0.999 + . logic_name=eponine scaffold_47 . biological_region 250313 250316 0.999 + . logic_name=eponine scaffold_47 . repeat_region 250324 250385 . ? . description=trf scaffold_47 . biological_region 250336 250344 0.999 + . logic_name=eponine scaffold_47 . biological_region 250343 250348 0.999 - . logic_name=eponine scaffold_47 . biological_region 250436 250437 0.999 - . logic_name=eponine scaffold_47 . biological_region 250465 250469 0.999 - . logic_name=eponine scaffold_47 . biological_region 250490 250491 0.999 + . logic_name=eponine scaffold_47 . repeat_region 250496 250569 . ? . description=trf scaffold_47 . repeat_region 250504 250557 . ? . description=trf scaffold_47 . biological_region 250868 250868 0.999 - . logic_name=eponine scaffold_47 . biological_region 250935 250939 0.999 + . logic_name=eponine scaffold_47 . biological_region 250972 250974 0.999 + . logic_name=eponine scaffold_47 . biological_region 251000 251001 0.999 - . logic_name=eponine scaffold_47 . biological_region 251272 251273 0.999 - . logic_name=eponine scaffold_47 . biological_region 254400 254404 0.999 + . logic_name=eponine scaffold_47 . repeat_region 254957 255000 . ? . description=trf scaffold_47 . repeat_region 255775 255788 . ? . description=dust scaffold_47 ensembl protein_coding_gene 246721 252106 . - . ID=Physo136667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470081;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 246721 252106 . - . ID=Physo136667;Parent=Physo136667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 246721 246726 . - 0 ID=Physo136667;Parent=Physo136667;rank=7 scaffold_47 . exon 246721 246726 . - . ID=Physo136667.7;Parent=Physo136667;constitutive=1;rank=7 scaffold_47 . CDS 246812 246835 . - 0 ID=Physo136667;Parent=Physo136667;rank=6 scaffold_47 . exon 246812 246835 . - . ID=Physo136667.6;Parent=Physo136667;constitutive=1;rank=6 scaffold_47 . CDS 246867 247435 . - 0 ID=Physo136667;Parent=Physo136667;rank=5 scaffold_47 . exon 246867 247435 . - . ID=Physo136667.5;Parent=Physo136667;constitutive=1;ensembl_phase=1;rank=5 scaffold_47 . CDS 247465 247671 . - 0 ID=Physo136667;Parent=Physo136667;rank=4 scaffold_47 . exon 247465 247671 . - . ID=Physo136667.4;Parent=Physo136667;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 247948 249531 . - 0 ID=Physo136667;Parent=Physo136667;rank=3 scaffold_47 . exon 247948 249531 . - . ID=Physo136667.3;Parent=Physo136667;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 249637 250222 . - 0 ID=Physo136667;Parent=Physo136667;rank=2 scaffold_47 . exon 249637 250222 . - . ID=Physo136667.2;Parent=Physo136667;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 251243 252106 . - 0 ID=Physo136667;Parent=Physo136667;rank=1 scaffold_47 . exon 251243 252106 . - . ID=Physo136667.1;Parent=Physo136667;constitutive=1;rank=1 scaffold_47 ensembl tRNA_gene 262369 262442 . + . ID=EPrPSOG00000000068;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_47 ensembl transcript 262369 262442 . + . ID=EPrPSOT00000000068;Parent=EPrPSOG00000000068;biotype=tRNA;logic_name=ncrna_eg scaffold_47 ensembl tRNA_gene 260637 260710 . - . ID=EPrPSOG00000000159;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_47 ensembl transcript 260637 260710 . - . ID=EPrPSOT00000000159;Parent=EPrPSOG00000000159;biotype=tRNA;logic_name=ncrna_eg scaffold_47 . exon 262369 262442 . + . ID=EPrPSOE00000000068;Parent=EPrPSOT00000000068;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . exon 260637 260710 . - . ID=EPrPSOE00000000159;Parent=EPrPSOT00000000159;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . repeat_region 266436 266445 . ? . description=dust scaffold_47 . repeat_region 266678 266730 . ? . description=dust scaffold_47 . biological_region 267908 267911 0.999 + . logic_name=eponine scaffold_47 . biological_region 268023 268028 0.999 - . logic_name=eponine scaffold_47 . biological_region 268672 268673 0.999 + . logic_name=eponine scaffold_47 . repeat_region 270590 270620 . ? . description=trf scaffold_47 . repeat_region 273311 274852 . - . description=Polinton-1_PI scaffold_47 . repeat_region 274854 278849 . ? . description=dust scaffold_47 ensembl protein_coding_gene 267641 267943 . - . ID=Physo136668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470082;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 267641 267943 . - . ID=Physo136668;Parent=Physo136668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 267641 267943 . - 0 ID=Physo136668;Parent=Physo136668;rank=1 scaffold_47 . exon 267641 267943 . - . ID=Physo136668.1;Parent=Physo136668;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 270134 271069 . - . ID=Physo136669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470083;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 270134 271069 . - . ID=Physo136669;Parent=Physo136669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 270134 270169 . - 0 ID=Physo136669;Parent=Physo136669;rank=5 scaffold_47 . exon 270134 270169 . - . ID=Physo136669.5;Parent=Physo136669;constitutive=1;rank=5 scaffold_47 . CDS 270252 270579 . - 0 ID=Physo136669;Parent=Physo136669;rank=4 scaffold_47 . exon 270252 270579 . - . ID=Physo136669.4;Parent=Physo136669;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 270685 270757 . - 0 ID=Physo136669;Parent=Physo136669;rank=3 scaffold_47 . exon 270685 270757 . - . ID=Physo136669.3;Parent=Physo136669;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 . CDS 270842 270943 . - 0 ID=Physo136669;Parent=Physo136669;rank=2 scaffold_47 . exon 270842 270943 . - . ID=Physo136669.2;Parent=Physo136669;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 271060 271069 . - 0 ID=Physo136669;Parent=Physo136669;rank=1 scaffold_47 . exon 271060 271069 . - . ID=Physo136669.1;Parent=Physo136669;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . repeat_region 285479 286299 . - . description=Polinton-1_PI scaffold_47 . repeat_region 286517 290140 . - . description=Polinton-1_PI scaffold_47 . repeat_region 291232 291277 . - . description=Polinton-1_PI scaffold_47 . repeat_region 291431 291719 . - . description=Polinton-1_PI scaffold_47 . repeat_region 291772 291838 . + . description=Polinton-1_PI scaffold_47 . repeat_region 291854 292038 . + . description=Polinton-1_PI scaffold_47 . repeat_region 294452 294475 . ? . description=trf scaffold_47 ensembl protein_coding_gene 286629 291602 . - . ID=Physo136670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470084;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 286629 291602 . - . ID=Physo136670;Parent=Physo136670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 286629 288537 . - 0 ID=Physo136670;Parent=Physo136670;rank=6 scaffold_47 . exon 286629 288537 . - . ID=Physo136670.6;Parent=Physo136670;constitutive=1;ensembl_phase=2;rank=6 scaffold_47 . CDS 288658 288862 . - 0 ID=Physo136670;Parent=Physo136670;rank=5 scaffold_47 . exon 288658 288862 . - . ID=Physo136670.5;Parent=Physo136670;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_47 . CDS 288883 289530 . - 0 ID=Physo136670;Parent=Physo136670;rank=4 scaffold_47 . exon 288883 289530 . - . ID=Physo136670.4;Parent=Physo136670;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 290381 290414 . - 0 ID=Physo136670;Parent=Physo136670;rank=3 scaffold_47 . exon 290381 290414 . - . ID=Physo136670.3;Parent=Physo136670;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 290471 290961 . - 0 ID=Physo136670;Parent=Physo136670;rank=2 scaffold_47 . exon 290471 290961 . - . ID=Physo136670.2;Parent=Physo136670;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 291034 291586 . - 0 ID=Physo136670;Parent=Physo136670;rank=1 scaffold_47 . exon 291034 291602 . - . ID=Physo136670.1;Parent=Physo136670;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_47 ensembl protein_coding_gene 293569 295578 . + . ID=Physo136671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470085;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 293569 295578 . + . ID=Physo136671;Parent=Physo136671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 293569 295578 . + 0 ID=Physo136671;Parent=Physo136671;rank=1 scaffold_47 . exon 293569 295578 . + . ID=Physo136671.1;Parent=Physo136671;constitutive=1;rank=1 scaffold_47 . biological_region 297163 297168 0.999 - . logic_name=eponine scaffold_47 . biological_region 302994 303002 0.999 - . logic_name=eponine scaffold_47 . biological_region 303488 303490 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 297007 298967 . + . ID=Physo136672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470086;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 297007 298967 . + . ID=Physo136672;Parent=Physo136672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 297007 297020 . + 0 ID=Physo136672;Parent=Physo136672;rank=1 scaffold_47 . exon 297007 297020 . + . ID=Physo136672.1;Parent=Physo136672;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 297084 297126 . + 0 ID=Physo136672;Parent=Physo136672;rank=2 scaffold_47 . exon 297084 297126 . + . ID=Physo136672.2;Parent=Physo136672;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 297190 297945 . + 0 ID=Physo136672;Parent=Physo136672;rank=3 scaffold_47 . exon 297190 297945 . + . ID=Physo136672.3;Parent=Physo136672;constitutive=1;rank=3 scaffold_47 . CDS 298132 298236 . + 0 ID=Physo136672;Parent=Physo136672;rank=4 scaffold_47 . exon 298132 298236 . + . ID=Physo136672.4;Parent=Physo136672;constitutive=1;rank=4 scaffold_47 . CDS 298263 298967 . + 0 ID=Physo136672;Parent=Physo136672;rank=5 scaffold_47 . exon 298263 298967 . + . ID=Physo136672.5;Parent=Physo136672;constitutive=1;rank=5 scaffold_47 ensembl protein_coding_gene 302750 307187 . + . ID=Physo136673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470087;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 302750 307187 . + . ID=Physo136673;Parent=Physo136673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 302750 302786 . + 0 ID=Physo136673;Parent=Physo136673;rank=1 scaffold_47 . exon 302750 302786 . + . ID=Physo136673.1;Parent=Physo136673;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 302881 304836 . + 0 ID=Physo136673;Parent=Physo136673;rank=2 scaffold_47 . exon 302881 304836 . + . ID=Physo136673.2;Parent=Physo136673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 304976 305019 . + 0 ID=Physo136673;Parent=Physo136673;rank=3 scaffold_47 . exon 304976 305019 . + . ID=Physo136673.3;Parent=Physo136673;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 305241 307187 . + 0 ID=Physo136673;Parent=Physo136673;rank=4 scaffold_47 . exon 305241 307187 . + . ID=Physo136673.4;Parent=Physo136673;constitutive=1;rank=4 scaffold_47 ensembl protein_coding_gene 307518 309249 . - . ID=Physo136674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470088;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 307518 309249 . - . ID=Physo136674;Parent=Physo136674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 307518 308312 . - 0 ID=Physo136674;Parent=Physo136674;rank=2 scaffold_47 . exon 307518 308312 . - . ID=Physo136674.2;Parent=Physo136674;constitutive=1;rank=2 scaffold_47 . CDS 308542 309249 . - 0 ID=Physo136674;Parent=Physo136674;rank=1 scaffold_47 . exon 308542 309249 . - . ID=Physo136674.1;Parent=Physo136674;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 311084 313657 . + . ID=Physo136675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470089;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 311084 313657 . + . ID=Physo136675;Parent=Physo136675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 311084 313657 . + 0 ID=Physo136675;Parent=Physo136675;rank=1 scaffold_47 . exon 311084 313657 . + . ID=Physo136675.1;Parent=Physo136675;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 313750 315684 . - . ID=Physo136676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470090;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 313750 315684 . - . ID=Physo136676;Parent=Physo136676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 313750 315684 . - 0 ID=Physo136676;Parent=Physo136676;rank=1 scaffold_47 . exon 313750 315684 . - . ID=Physo136676.1;Parent=Physo136676;constitutive=1;rank=1 scaffold_47 . biological_region 321165 321170 0.999 - . logic_name=eponine scaffold_47 . repeat_region 322287 322300 . ? . description=dust scaffold_47 ensembl protein_coding_gene 316432 319613 . + . ID=Physo136677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470091;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 316432 319613 . + . ID=Physo136677;Parent=Physo136677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 316432 316517 . + 0 ID=Physo136677;Parent=Physo136677;rank=1 scaffold_47 . exon 316432 316517 . + . ID=Physo136677.1;Parent=Physo136677;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 316561 317585 . + 0 ID=Physo136677;Parent=Physo136677;rank=2 scaffold_47 . exon 316561 317585 . + . ID=Physo136677.2;Parent=Physo136677;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 317731 318131 . + 0 ID=Physo136677;Parent=Physo136677;rank=3 scaffold_47 . exon 317731 318131 . + . ID=Physo136677.3;Parent=Physo136677;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 318380 318445 . + 0 ID=Physo136677;Parent=Physo136677;rank=4 scaffold_47 . exon 318380 318445 . + . ID=Physo136677.4;Parent=Physo136677;constitutive=1;rank=4 scaffold_47 . CDS 318657 319613 . + 0 ID=Physo136677;Parent=Physo136677;rank=5 scaffold_47 . exon 318657 319613 . + . ID=Physo136677.5;Parent=Physo136677;constitutive=1;rank=5 scaffold_47 ensembl protein_coding_gene 320117 324119 . + . ID=Physo136678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470092;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 320117 324119 . + . ID=Physo136678;Parent=Physo136678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 320117 321931 . + 0 ID=Physo136678;Parent=Physo136678;rank=1 scaffold_47 . exon 320117 321931 . + . ID=Physo136678.1;Parent=Physo136678;constitutive=1;rank=1 scaffold_47 . CDS 322065 322091 . + 0 ID=Physo136678;Parent=Physo136678;rank=2 scaffold_47 . exon 322065 322091 . + . ID=Physo136678.2;Parent=Physo136678;constitutive=1;rank=2 scaffold_47 . CDS 322389 322611 . + 0 ID=Physo136678;Parent=Physo136678;rank=3 scaffold_47 . exon 322389 322611 . + . ID=Physo136678.3;Parent=Physo136678;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 322691 322922 . + 0 ID=Physo136678;Parent=Physo136678;rank=4 scaffold_47 . exon 322691 322922 . + . ID=Physo136678.4;Parent=Physo136678;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_47 . CDS 323149 323821 . + 0 ID=Physo136678;Parent=Physo136678;rank=5 scaffold_47 . exon 323149 323821 . + . ID=Physo136678.5;Parent=Physo136678;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 . CDS 323851 323988 . + 0 ID=Physo136678;Parent=Physo136678;rank=6 scaffold_47 . exon 323851 323988 . + . ID=Physo136678.6;Parent=Physo136678;constitutive=1;rank=6 scaffold_47 . CDS 324054 324119 . + 0 ID=Physo136678;Parent=Physo136678;rank=7 scaffold_47 . exon 324054 324119 . + . ID=Physo136678.7;Parent=Physo136678;constitutive=1;rank=7 scaffold_47 ensembl protein_coding_gene 324330 326031 . - . ID=Physo136679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470093;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 324330 326031 . - . ID=Physo136679;Parent=Physo136679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 324330 325470 . - 0 ID=Physo136679;Parent=Physo136679;rank=2 scaffold_47 . exon 324330 325470 . - . ID=Physo136679.2;Parent=Physo136679;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 325589 326031 . - 0 ID=Physo136679;Parent=Physo136679;rank=1 scaffold_47 . repeat_region 331181 331227 . ? . description=trf scaffold_47 . repeat_region 331181 331284 . + . description=(TCG)n scaffold_47 . repeat_region 331256 331284 . ? . description=trf scaffold_47 . exon 325589 326031 . - . ID=Physo136679.1;Parent=Physo136679;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 326581 328572 . + . ID=Physo136680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470094;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 326581 328572 . + . ID=Physo136680;Parent=Physo136680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 326581 328572 . + 0 ID=Physo136680;Parent=Physo136680;rank=1 scaffold_47 . exon 326581 328572 . + . ID=Physo136680.1;Parent=Physo136680;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 329016 331049 . + . ID=Physo136681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470095;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 329016 331049 . + . ID=Physo136681;Parent=Physo136681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 329016 331049 . + 0 ID=Physo136681;Parent=Physo136681;rank=1 scaffold_47 . exon 329016 331049 . + . ID=Physo136681.1;Parent=Physo136681;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 331171 332229 . - . ID=Physo136682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470096;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 331171 332229 . - . ID=Physo136682;Parent=Physo136682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 331171 331290 . - 0 ID=Physo136682;Parent=Physo136682;rank=3 scaffold_47 . exon 331171 331290 . - . ID=Physo136682.3;Parent=Physo136682;constitutive=1;rank=3 scaffold_47 . CDS 331389 331496 . - 0 ID=Physo136682;Parent=Physo136682;rank=2 scaffold_47 . exon 331389 331496 . - . ID=Physo136682.2;Parent=Physo136682;constitutive=1;rank=2 scaffold_47 . CDS 331582 332229 . - 0 ID=Physo136682;Parent=Physo136682;rank=1 scaffold_47 . exon 331582 332229 . - . ID=Physo136682.1;Parent=Physo136682;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 332390 335211 . + . ID=Physo136683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470097;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 332390 335211 . + . ID=Physo136683;Parent=Physo136683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 332390 333218 . + 0 ID=Physo136683;Parent=Physo136683;rank=1 scaffold_47 . exon 332390 333218 . + . ID=Physo136683.1;Parent=Physo136683;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 333288 333481 . + 0 ID=Physo136683;Parent=Physo136683;rank=2 scaffold_47 . exon 333288 333481 . + . ID=Physo136683.2;Parent=Physo136683;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 333559 333863 . + 0 ID=Physo136683;Parent=Physo136683;rank=3 scaffold_47 . exon 333559 333863 . + . ID=Physo136683.3;Parent=Physo136683;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 334092 335211 . + 0 ID=Physo136683;Parent=Physo136683;rank=4 scaffold_47 . exon 334092 335211 . + . ID=Physo136683.4;Parent=Physo136683;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 ensembl protein_coding_gene 335237 337242 . - . ID=Physo157471;biotype=protein_coding;external_name=C_scaffold_47000017;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 335237 337242 . - . ID=Physo157471;Parent=Physo157471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 335237 335535 . - 0 ID=Physo157471;Parent=Physo157471;rank=6 scaffold_47 . exon 335237 335535 . - . ID=Physo157471.6;Parent=Physo157471;constitutive=1;ensembl_phase=1;rank=6 scaffold_47 . CDS 335575 336073 . - 0 ID=Physo157471;Parent=Physo157471;rank=5 scaffold_47 . CDS 336147 336408 . - 0 ID=Physo157471;Parent=Physo157471;rank=4 scaffold_47 . CDS 336566 336862 . - 0 ID=Physo157471;Parent=Physo157471;rank=3 scaffold_47 . CDS 336884 337042 . - 0 ID=Physo157471;Parent=Physo157471;rank=2 scaffold_47 . CDS 337073 337242 . - 0 ID=Physo157471;Parent=Physo157471;rank=1 scaffold_47 . repeat_region 340140 340147 . ? . description=dust scaffold_47 . repeat_region 340367 340379 . ? . description=dust scaffold_47 . repeat_region 341795 341965 . - . description=Polinton-1_PI scaffold_47 ensembl protein_coding_gene 337639 338472 . + . ID=Physo136685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470099;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 337639 338472 . + . ID=Physo136685;Parent=Physo136685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 337639 338472 . + 0 ID=Physo136685;Parent=Physo136685;rank=1 scaffold_47 . exon 337639 338472 . + . ID=Physo136685.1;Parent=Physo136685;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 339086 340053 . + . ID=Physo136686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470100;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 339086 340053 . + . ID=Physo136686;Parent=Physo136686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 339086 339507 . + 0 ID=Physo136686;Parent=Physo136686;rank=1 scaffold_47 . exon 339086 339507 . + . ID=Physo136686.1;Parent=Physo136686;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 339930 340053 . + 0 ID=Physo136686;Parent=Physo136686;rank=2 scaffold_47 . exon 339930 340053 . + . ID=Physo136686.2;Parent=Physo136686;constitutive=1;ensembl_phase=2;rank=2 scaffold_47 . exon 335575 336073 . - . ID=Physo157471.5;Parent=Physo157471;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_47 . exon 336147 336408 . - . ID=Physo157471.4;Parent=Physo157471;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . exon 336566 336862 . - . ID=Physo157471.3;Parent=Physo157471;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_47 . exon 336884 337042 . - . ID=Physo157471.2;Parent=Physo157471;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_47 . exon 337073 337242 . - . ID=Physo157471.1;Parent=Physo157471;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . repeat_region 346128 346176 . ? . description=trf scaffold_47 . biological_region 346813 346819 0.999 - . logic_name=eponine scaffold_47 . biological_region 349738 349743 0.999 + . logic_name=eponine scaffold_47 . biological_region 350959 350964 0.999 + . logic_name=eponine scaffold_47 . biological_region 350979 350982 0.999 - . logic_name=eponine scaffold_47 . biological_region 351029 351036 0.999 - . logic_name=eponine scaffold_47 . biological_region 351053 351056 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 348755 352650 . - . ID=Physo136687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470101;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 348755 352650 . - . ID=Physo136687;Parent=Physo136687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 348755 348880 . - 0 ID=Physo136687;Parent=Physo136687;rank=6 scaffold_47 . exon 348755 348880 . - . ID=Physo136687.6;Parent=Physo136687;constitutive=1;rank=6 scaffold_47 . CDS 348921 349395 . - 0 ID=Physo136687;Parent=Physo136687;rank=5 scaffold_47 . exon 348921 349395 . - . ID=Physo136687.5;Parent=Physo136687;constitutive=1;ensembl_phase=2;rank=5 scaffold_47 . CDS 349774 350666 . - 0 ID=Physo136687;Parent=Physo136687;rank=4 scaffold_47 . exon 349774 350666 . - . ID=Physo136687.4;Parent=Physo136687;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_47 . CDS 350943 351867 . - 0 ID=Physo136687;Parent=Physo136687;rank=3 scaffold_47 . exon 350943 351867 . - . ID=Physo136687.3;Parent=Physo136687;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 352065 352577 . - 0 ID=Physo136687;Parent=Physo136687;rank=2 scaffold_47 . exon 352065 352577 . - . ID=Physo136687.2;Parent=Physo136687;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_47 . CDS 352643 352650 . - 0 ID=Physo136687;Parent=Physo136687;rank=1 scaffold_47 . exon 352643 352650 . - . ID=Physo136687.1;Parent=Physo136687;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 ensembl protein_coding_gene 356856 357746 . + . ID=Physo136688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470102;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 356856 357746 . + . ID=Physo136688;Parent=Physo136688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 356856 357746 . + 0 ID=Physo136688;Parent=Physo136688;rank=1 scaffold_47 . exon 356856 357746 . + . ID=Physo136688.1;Parent=Physo136688;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 358100 361359 . - . ID=Physo136689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470103;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 358100 361359 . - . ID=Physo136689;Parent=Physo136689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 358100 358465 . - 0 ID=Physo136689;Parent=Physo136689;rank=8 scaffold_47 . exon 358100 358465 . - . ID=Physo136689.8;Parent=Physo136689;constitutive=1;rank=8 scaffold_47 . CDS 358563 358779 . - 0 ID=Physo136689;Parent=Physo136689;rank=7 scaffold_47 . exon 358563 358779 . - . ID=Physo136689.7;Parent=Physo136689;constitutive=1;ensembl_phase=2;rank=7 scaffold_47 . CDS 358856 359108 . - 0 ID=Physo136689;Parent=Physo136689;rank=6 scaffold_47 . exon 358856 359108 . - . ID=Physo136689.6;Parent=Physo136689;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_47 . CDS 359238 359685 . - 0 ID=Physo136689;Parent=Physo136689;rank=5 scaffold_47 . exon 359238 359685 . - . ID=Physo136689.5;Parent=Physo136689;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_47 . CDS 359763 360089 . - 0 ID=Physo136689;Parent=Physo136689;rank=4 scaffold_47 . exon 359763 360089 . - . ID=Physo136689.4;Parent=Physo136689;constitutive=1;rank=4 scaffold_47 . CDS 360148 360440 . - 0 ID=Physo136689;Parent=Physo136689;rank=3 scaffold_47 . exon 360148 360440 . - . ID=Physo136689.3;Parent=Physo136689;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 360488 361169 . - 0 ID=Physo136689;Parent=Physo136689;rank=2 scaffold_47 . exon 360488 361169 . - . ID=Physo136689.2;Parent=Physo136689;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 361210 361359 . - 0 ID=Physo136689;Parent=Physo136689;rank=1 scaffold_47 . exon 361210 361359 . - . ID=Physo136689.1;Parent=Physo136689;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 362913 364369 . - . ID=Physo136690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470104;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 362913 364369 . - . ID=Physo136690;Parent=Physo136690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 362913 363237 . - 0 ID=Physo136690;Parent=Physo136690;rank=4 scaffold_47 . exon 362913 363237 . - . ID=Physo136690.4;Parent=Physo136690;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 363306 363505 . - 0 ID=Physo136690;Parent=Physo136690;rank=3 scaffold_47 . exon 363306 363505 . - . ID=Physo136690.3;Parent=Physo136690;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 363589 364185 . - 0 ID=Physo136690;Parent=Physo136690;rank=2 scaffold_47 . exon 363589 364185 . - . ID=Physo136690.2;Parent=Physo136690;constitutive=1;rank=2 scaffold_47 . CDS 364211 364369 . - 0 ID=Physo136690;Parent=Physo136690;rank=1 scaffold_47 . exon 364211 364369 . - . ID=Physo136690.1;Parent=Physo136690;constitutive=1;rank=1 scaffold_47 . repeat_region 367775 367817 . ? . description=trf scaffold_47 . repeat_region 368993 369000 . ? . description=dust scaffold_47 . repeat_region 370310 370317 . ? . description=dust scaffold_47 . biological_region 370897 370900 0.999 + . logic_name=eponine scaffold_47 . repeat_region 372286 372403 . ? . description=trf scaffold_47 . repeat_region 372287 372403 . ? . description=trf scaffold_47 . repeat_region 372722 372730 . ? . description=dust scaffold_47 . biological_region 386896 386897 0.999 - . logic_name=eponine scaffold_47 . repeat_region 387801 387847 . ? . description=trf scaffold_47 . repeat_region 387801 387847 . ? . description=trf scaffold_47 . repeat_region 392426 392456 . ? . description=dust scaffold_47 . repeat_region 392426 392458 . ? . description=trf scaffold_47 . repeat_region 392426 392458 . ? . description=trf scaffold_47 . repeat_region 392427 392455 . ? . description=trf scaffold_47 . biological_region 393656 393657 0.999 + . logic_name=eponine scaffold_47 . biological_region 393877 393878 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 393068 395785 . - . ID=Physo136691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470105;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 393068 395785 . - . ID=Physo136691;Parent=Physo136691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 393068 395785 . - 0 ID=Physo136691;Parent=Physo136691;rank=1 scaffold_47 . exon 393068 395785 . - . ID=Physo136691.1;Parent=Physo136691;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 396009 397288 . + . ID=Physo136692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470106;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 396009 397288 . + . ID=Physo136692;Parent=Physo136692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 396009 397288 . + . ID=Physo136692.1;Parent=Physo136692;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 396040 397122 . + 0 ID=Physo136692;Parent=Physo136692;rank=1 scaffold_47 ensembl protein_coding_gene 397558 399730 . + . ID=Physo136693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470107;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 397558 399730 . + . ID=Physo136693;Parent=Physo136693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 397558 397606 . + 0 ID=Physo136693;Parent=Physo136693;rank=1 scaffold_47 . exon 397558 397606 . + . ID=Physo136693.1;Parent=Physo136693;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 397695 399730 . + 0 ID=Physo136693;Parent=Physo136693;rank=2 scaffold_47 . exon 397695 399730 . + . ID=Physo136693.2;Parent=Physo136693;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 ensembl protein_coding_gene 400033 403745 . - . ID=Physo136694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470108;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 400033 403745 . - . ID=Physo136694;Parent=Physo136694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 400033 400893 . - 0 ID=Physo136694;Parent=Physo136694;rank=4 scaffold_47 . exon 400033 400893 . - . ID=Physo136694.4;Parent=Physo136694;constitutive=1;rank=4 scaffold_47 . CDS 400977 402102 . - 0 ID=Physo136694;Parent=Physo136694;rank=3 scaffold_47 . exon 400977 402102 . - . ID=Physo136694.3;Parent=Physo136694;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 402187 402567 . - 0 ID=Physo136694;Parent=Physo136694;rank=2 scaffold_47 . exon 402187 402567 . - . ID=Physo136694.2;Parent=Physo136694;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_47 . CDS 402646 403745 . - 0 ID=Physo136694;Parent=Physo136694;rank=1 scaffold_47 . exon 402646 403745 . - . ID=Physo136694.1;Parent=Physo136694;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . biological_region 404696 404699 0.999 + . logic_name=eponine scaffold_47 . repeat_region 407752 407776 . ? . description=trf scaffold_47 . repeat_region 407894 407981 . + . description=(CGA)n scaffold_47 . repeat_region 407909 407929 . ? . description=trf scaffold_47 . biological_region 407955 407956 0.999 - . logic_name=eponine scaffold_47 . biological_region 407978 407982 0.999 + . logic_name=eponine scaffold_47 . biological_region 408076 408077 0.999 + . logic_name=eponine scaffold_47 . biological_region 409508 409509 0.999 + . logic_name=eponine scaffold_47 . biological_region 409751 409753 0.999 + . logic_name=eponine scaffold_47 . repeat_region 409762 409820 . ? . description=trf scaffold_47 . biological_region 409951 409956 0.999 - . logic_name=eponine scaffold_47 . biological_region 409963 409966 0.999 - . logic_name=eponine scaffold_47 . biological_region 411057 411058 0.999 - . logic_name=eponine scaffold_47 . biological_region 411110 411115 0.999 + . logic_name=eponine scaffold_47 . biological_region 412136 412137 0.999 + . logic_name=eponine scaffold_47 . biological_region 412255 412260 0.999 - . logic_name=eponine scaffold_47 . biological_region 412367 412372 0.999 + . logic_name=eponine scaffold_47 . biological_region 412395 412400 0.999 - . logic_name=eponine scaffold_47 . biological_region 412438 412444 0.999 - . logic_name=eponine scaffold_47 . biological_region 412472 412474 0.999 + . logic_name=eponine scaffold_47 . biological_region 412495 412495 0.999 + . logic_name=eponine scaffold_47 . biological_region 412498 412504 0.999 - . logic_name=eponine scaffold_47 . biological_region 412522 412522 0.999 - . logic_name=eponine scaffold_47 . repeat_region 412645 412654 . ? . description=dust scaffold_47 ensembl protein_coding_gene 404528 405974 . + . ID=Physo136695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470109;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 404528 405974 . + . ID=Physo136695;Parent=Physo136695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 404528 405016 . + 0 ID=Physo136695;Parent=Physo136695;rank=1 scaffold_47 . exon 404528 405016 . + . ID=Physo136695.1;Parent=Physo136695;constitutive=1;rank=1 scaffold_47 . CDS 405090 405461 . + 0 ID=Physo136695;Parent=Physo136695;rank=2 scaffold_47 . exon 405090 405461 . + . ID=Physo136695.2;Parent=Physo136695;constitutive=1;rank=2 scaffold_47 . CDS 405529 405536 . + 0 ID=Physo136695;Parent=Physo136695;rank=3 scaffold_47 . exon 405529 405536 . + . ID=Physo136695.3;Parent=Physo136695;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 405611 405974 . + 0 ID=Physo136695;Parent=Physo136695;rank=4 scaffold_47 . exon 405611 405974 . + . ID=Physo136695.4;Parent=Physo136695;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 ensembl protein_coding_gene 406294 407048 . + . ID=Physo136696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470110;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 406294 407048 . + . ID=Physo136696;Parent=Physo136696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 406294 407046 . + 0 ID=Physo136696;Parent=Physo136696;rank=1 scaffold_47 . exon 406294 407048 . + . ID=Physo136696.1;Parent=Physo136696;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_47 ensembl protein_coding_gene 407785 408803 . + . ID=Physo136697;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470111;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 407785 408803 . + . ID=Physo136697;Parent=Physo136697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 407785 408803 . + . ID=Physo136697.1;Parent=Physo136697;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 407832 408626 . + 0 ID=Physo136697;Parent=Physo136697;rank=1 scaffold_47 ensembl protein_coding_gene 409378 412558 . - . ID=Physo157478;biotype=protein_coding;external_name=C_scaffold_47000024;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 409378 412558 . - . ID=Physo157478;Parent=Physo157478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 409378 409858 . - 0 ID=Physo157478;Parent=Physo157478;rank=7 scaffold_47 . exon 409378 409858 . - . ID=Physo157478.7;Parent=Physo157478;constitutive=1;ensembl_phase=2;rank=7 scaffold_47 . CDS 410057 410392 . - 0 ID=Physo157478;Parent=Physo157478;rank=6 scaffold_47 . exon 410057 410392 . - . ID=Physo157478.6;Parent=Physo157478;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_47 . CDS 410467 410631 . - 0 ID=Physo157478;Parent=Physo157478;rank=5 scaffold_47 . exon 410467 410631 . - . ID=Physo157478.5;Parent=Physo157478;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_47 . CDS 410695 410740 . - 0 ID=Physo157478;Parent=Physo157478;rank=4 scaffold_47 . exon 410695 410740 . - . ID=Physo157478.4;Parent=Physo157478;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_47 . CDS 410813 411461 . - 0 ID=Physo157478;Parent=Physo157478;rank=3 scaffold_47 . exon 410813 411461 . - . ID=Physo157478.3;Parent=Physo157478;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 411547 411759 . - 0 ID=Physo157478;Parent=Physo157478;rank=2 scaffold_47 . exon 411547 411759 . - . ID=Physo157478.2;Parent=Physo157478;constitutive=1;rank=2 scaffold_47 . CDS 412058 412558 . - 0 ID=Physo157478;Parent=Physo157478;rank=1 scaffold_47 . exon 412058 412558 . - . ID=Physo157478.1;Parent=Physo157478;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 412690 414924 . - . ID=Physo157479;biotype=protein_coding;external_name=C_scaffold_47000025;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 412690 414924 . - . ID=Physo157479;Parent=Physo157479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 412690 412791 . - 0 ID=Physo157479;Parent=Physo157479;rank=9 scaffold_47 . exon 412690 412791 . - . ID=Physo157479.9;Parent=Physo157479;constitutive=1;rank=9 scaffold_47 . CDS 412866 412907 . - 0 ID=Physo157479;Parent=Physo157479;rank=8 scaffold_47 . exon 412866 412907 . - . ID=Physo157479.8;Parent=Physo157479;constitutive=1;rank=8 scaffold_47 . CDS 412976 413071 . - 0 ID=Physo157479;Parent=Physo157479;rank=7 scaffold_47 . exon 412976 413071 . - . ID=Physo157479.7;Parent=Physo157479;constitutive=1;rank=7 scaffold_47 . CDS 413147 413242 . - 0 ID=Physo157479;Parent=Physo157479;rank=6 scaffold_47 . exon 413147 413242 . - . ID=Physo157479.6;Parent=Physo157479;constitutive=1;rank=6 scaffold_47 . CDS 413305 413556 . - 0 ID=Physo157479;Parent=Physo157479;rank=5 scaffold_47 . exon 413305 413556 . - . ID=Physo157479.5;Parent=Physo157479;constitutive=1;rank=5 scaffold_47 . CDS 413632 413836 . - 0 ID=Physo157479;Parent=Physo157479;rank=4 scaffold_47 . exon 413632 413836 . - . ID=Physo157479.4;Parent=Physo157479;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 413910 414467 . - 0 ID=Physo157479;Parent=Physo157479;rank=3 scaffold_47 . exon 413910 414467 . - . ID=Physo157479.3;Parent=Physo157479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_47 . CDS 414530 414682 . - 0 ID=Physo157479;Parent=Physo157479;rank=2 scaffold_47 . CDS 414707 414924 . - 0 ID=Physo157479;Parent=Physo157479;rank=1 scaffold_47 ensembl protein_coding_gene 415248 420179 . + . ID=Physo136700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470114;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 415248 420179 . + . ID=Physo136700;Parent=Physo136700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 415248 415313 . + 0 ID=Physo136700;Parent=Physo136700;rank=1 scaffold_47 . exon 415248 415313 . + . ID=Physo136700.1;Parent=Physo136700;constitutive=1;rank=1 scaffold_47 . CDS 415376 415440 . + 0 ID=Physo136700;Parent=Physo136700;rank=2 scaffold_47 . exon 415376 415440 . + . ID=Physo136700.2;Parent=Physo136700;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_47 . CDS 415514 415740 . + 0 ID=Physo136700;Parent=Physo136700;rank=3 scaffold_47 . exon 415514 415740 . + . ID=Physo136700.3;Parent=Physo136700;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 415824 415936 . + 0 ID=Physo136700;Parent=Physo136700;rank=4 scaffold_47 . exon 415824 415936 . + . ID=Physo136700.4;Parent=Physo136700;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 416003 416075 . + 0 ID=Physo136700;Parent=Physo136700;rank=5 scaffold_47 . exon 416003 416075 . + . ID=Physo136700.5;Parent=Physo136700;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_47 . CDS 416146 416626 . + 0 ID=Physo136700;Parent=Physo136700;rank=6 scaffold_47 . exon 416146 416626 . + . ID=Physo136700.6;Parent=Physo136700;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_47 . CDS 416699 416813 . + 0 ID=Physo136700;Parent=Physo136700;rank=7 scaffold_47 . exon 416699 416813 . + . ID=Physo136700.7;Parent=Physo136700;constitutive=1;ensembl_phase=2;rank=7 scaffold_47 . CDS 416884 416991 . + 0 ID=Physo136700;Parent=Physo136700;rank=8 scaffold_47 . exon 416884 416991 . + . ID=Physo136700.8;Parent=Physo136700;constitutive=1;rank=8 scaffold_47 . CDS 417062 417127 . + 0 ID=Physo136700;Parent=Physo136700;rank=9 scaffold_47 . exon 417062 417127 . + . ID=Physo136700.9;Parent=Physo136700;constitutive=1;rank=9 scaffold_47 . CDS 417211 417515 . + 0 ID=Physo136700;Parent=Physo136700;rank=10 scaffold_47 . exon 417211 417515 . + . ID=Physo136700.10;Parent=Physo136700;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_47 . CDS 417688 417802 . + 0 ID=Physo136700;Parent=Physo136700;rank=11 scaffold_47 . exon 417688 417802 . + . ID=Physo136700.11;Parent=Physo136700;constitutive=1;ensembl_phase=2;rank=11 scaffold_47 . CDS 417877 417941 . + 0 ID=Physo136700;Parent=Physo136700;rank=12 scaffold_47 . exon 417877 417941 . + . ID=Physo136700.12;Parent=Physo136700;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_47 . CDS 418018 418111 . + 0 ID=Physo136700;Parent=Physo136700;rank=13 scaffold_47 . exon 418018 418111 . + . ID=Physo136700.13;Parent=Physo136700;constitutive=1;ensembl_phase=2;rank=13 scaffold_47 . CDS 418180 418315 . + 0 ID=Physo136700;Parent=Physo136700;rank=14 scaffold_47 . exon 418180 418315 . + . ID=Physo136700.14;Parent=Physo136700;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_47 . CDS 418399 418502 . + 0 ID=Physo136700;Parent=Physo136700;rank=15 scaffold_47 . exon 418399 418502 . + . ID=Physo136700.15;Parent=Physo136700;constitutive=1;ensembl_phase=1;rank=15 scaffold_47 . CDS 418768 419213 . + 0 ID=Physo136700;Parent=Physo136700;rank=16 scaffold_47 . exon 418768 419213 . + . ID=Physo136700.16;Parent=Physo136700;constitutive=1;ensembl_end_phase=2;rank=16 scaffold_47 . CDS 419275 419401 . + 0 ID=Physo136700;Parent=Physo136700;rank=17 scaffold_47 . exon 419275 419401 . + . ID=Physo136700.17;Parent=Physo136700;constitutive=1;ensembl_phase=2;rank=17 scaffold_47 . CDS 419470 419577 . + 0 ID=Physo136700;Parent=Physo136700;rank=18 scaffold_47 . exon 419470 419577 . + . ID=Physo136700.18;Parent=Physo136700;constitutive=1;rank=18 scaffold_47 . CDS 419656 419721 . + 0 ID=Physo136700;Parent=Physo136700;rank=19 scaffold_47 . exon 419656 419721 . + . ID=Physo136700.19;Parent=Physo136700;constitutive=1;rank=19 scaffold_47 . CDS 419792 419946 . + 0 ID=Physo136700;Parent=Physo136700;rank=20 scaffold_47 . exon 419792 419946 . + . ID=Physo136700.20;Parent=Physo136700;constitutive=1;ensembl_end_phase=2;rank=20 scaffold_47 . CDS 420023 420179 . + 0 ID=Physo136700;Parent=Physo136700;rank=21 scaffold_47 . exon 420023 420179 . + . ID=Physo136700.21;Parent=Physo136700;constitutive=1;ensembl_phase=2;rank=21 scaffold_47 ensembl protein_coding_gene 420415 422610 . + . ID=Physo136701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470115;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 420415 422610 . + . ID=Physo136701;Parent=Physo136701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 420415 420480 . + 0 ID=Physo136701;Parent=Physo136701;rank=1 scaffold_47 . exon 420415 420480 . + . ID=Physo136701.1;Parent=Physo136701;constitutive=1;rank=1 scaffold_47 . CDS 420551 420615 . + 0 ID=Physo136701;Parent=Physo136701;rank=2 scaffold_47 . exon 420551 420615 . + . ID=Physo136701.2;Parent=Physo136701;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_47 . CDS 420659 420909 . + 0 ID=Physo136701;Parent=Physo136701;rank=3 scaffold_47 . exon 420659 420909 . + . ID=Physo136701.3;Parent=Physo136701;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 420989 421101 . + 0 ID=Physo136701;Parent=Physo136701;rank=4 scaffold_47 . exon 420989 421101 . + . ID=Physo136701.4;Parent=Physo136701;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 421168 421240 . + 0 ID=Physo136701;Parent=Physo136701;rank=5 scaffold_47 . exon 421168 421240 . + . ID=Physo136701.5;Parent=Physo136701;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_47 . CDS 421313 421899 . + 0 ID=Physo136701;Parent=Physo136701;rank=6 scaffold_47 . exon 421313 421899 . + . ID=Physo136701.6;Parent=Physo136701;constitutive=1;ensembl_phase=1;rank=6 scaffold_47 . CDS 421980 422087 . + 0 ID=Physo136701;Parent=Physo136701;rank=7 scaffold_47 . exon 421980 422087 . + . ID=Physo136701.7;Parent=Physo136701;constitutive=1;rank=7 scaffold_47 . CDS 422158 422223 . + 0 ID=Physo136701;Parent=Physo136701;rank=8 scaffold_47 . exon 422158 422223 . + . ID=Physo136701.8;Parent=Physo136701;constitutive=1;rank=8 scaffold_47 . CDS 422299 422610 . + 0 ID=Physo136701;Parent=Physo136701;rank=9 scaffold_47 . exon 422299 422610 . + . ID=Physo136701.9;Parent=Physo136701;constitutive=1;rank=9 scaffold_47 ensembl protein_coding_gene 422941 424426 . - . ID=Physo136702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470116;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 422941 424426 . - . ID=Physo136702;Parent=Physo136702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 422941 424401 . - 0 ID=Physo136702;Parent=Physo136702;rank=1 scaffold_47 . exon 422941 424426 . - . ID=Physo136702.1;Parent=Physo136702;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 . exon 414530 414682 . - . ID=Physo157479.2;Parent=Physo157479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_47 . exon 414707 414924 . - . ID=Physo157479.1;Parent=Physo157479;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . biological_region 424384 424391 0.999 - . logic_name=eponine scaffold_47 . biological_region 424760 424762 0.999 - . logic_name=eponine scaffold_47 . biological_region 424790 424793 0.999 - . logic_name=eponine scaffold_47 . repeat_region 425067 425086 . ? . description=trf scaffold_47 . biological_region 427358 427364 0.999 + . logic_name=eponine scaffold_47 . biological_region 427505 427506 0.999 - . logic_name=eponine scaffold_47 . biological_region 427635 427641 0.999 - . logic_name=eponine scaffold_47 . repeat_region 427715 427768 . ? . description=trf scaffold_47 . biological_region 427834 427838 0.999 - . logic_name=eponine scaffold_47 . biological_region 427851 427854 0.999 + . logic_name=eponine scaffold_47 . biological_region 428997 429001 0.999 + . logic_name=eponine scaffold_47 . repeat_region 429213 429220 . ? . description=dust scaffold_47 . biological_region 429493 429493 0.999 + . logic_name=eponine scaffold_47 . biological_region 429572 429573 0.999 + . logic_name=eponine scaffold_47 . biological_region 429646 429647 0.999 - . logic_name=eponine scaffold_47 . biological_region 429863 429867 0.999 + . logic_name=eponine scaffold_47 . biological_region 429880 429886 0.999 + . logic_name=eponine scaffold_47 . biological_region 429993 429998 0.999 - . logic_name=eponine scaffold_47 . biological_region 430388 430389 0.999 - . logic_name=eponine scaffold_47 . biological_region 432853 432855 0.999 - . logic_name=eponine scaffold_47 . biological_region 432862 432868 0.999 + . logic_name=eponine scaffold_47 . biological_region 432960 432967 0.999 + . logic_name=eponine scaffold_47 . biological_region 432995 432999 0.999 - . logic_name=eponine scaffold_47 . biological_region 433347 433351 0.999 + . logic_name=eponine scaffold_47 . biological_region 433437 433441 0.999 + . logic_name=eponine scaffold_47 . biological_region 433469 433474 0.999 + . logic_name=eponine scaffold_47 . biological_region 433517 433523 0.999 - . logic_name=eponine scaffold_47 . biological_region 433530 433533 0.999 + . logic_name=eponine scaffold_47 . biological_region 433536 433539 0.999 - . logic_name=eponine scaffold_47 . biological_region 433548 433551 0.999 + . logic_name=eponine scaffold_47 . biological_region 433823 433824 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 425188 426529 . + . ID=Physo108969;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_470008;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 425188 426529 . + . ID=Physo108969;Parent=Physo108969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 425188 425849 . + . ID=Physo108969.1;Parent=Physo108969;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 425682 425849 . + 0 ID=Physo108969;Parent=Physo108969;rank=1 scaffold_47 . CDS 425949 426043 . + 0 ID=Physo108969;Parent=Physo108969;rank=2 scaffold_47 . exon 425949 426043 . + . ID=Physo108969.2;Parent=Physo108969;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_47 . CDS 426115 426529 . + 0 ID=Physo108969;Parent=Physo108969;rank=3 scaffold_47 . exon 426115 426529 . + . ID=Physo108969.3;Parent=Physo108969;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 ensembl protein_coding_gene 426750 427793 . - . ID=Physo136705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470119;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 426750 427793 . - . ID=Physo136705;Parent=Physo136705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 426750 426925 . - 0 ID=Physo136705;Parent=Physo136705;rank=3 scaffold_47 . exon 426750 426925 . - . ID=Physo136705.3;Parent=Physo136705;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . CDS 427013 427193 . - 0 ID=Physo136705;Parent=Physo136705;rank=2 scaffold_47 . exon 427013 427193 . - . ID=Physo136705.2;Parent=Physo136705;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_47 . CDS 427278 427793 . - 0 ID=Physo136705;Parent=Physo136705;rank=1 scaffold_47 . exon 427278 427793 . - . ID=Physo136705.1;Parent=Physo136705;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 429483 431792 . + . ID=Physo136706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470120;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 429483 431792 . + . ID=Physo136706;Parent=Physo136706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 429483 431693 . + 0 ID=Physo136706;Parent=Physo136706;rank=1 scaffold_47 . exon 429483 431792 . + . ID=Physo136706.1;Parent=Physo136706;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_47 ensembl protein_coding_gene 432219 434201 . - . ID=Physo136707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470121;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 432219 434201 . - . ID=Physo136707;Parent=Physo136707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 432219 432266 . - 0 ID=Physo136707;Parent=Physo136707;rank=2 scaffold_47 . exon 432219 432266 . - . ID=Physo136707.2;Parent=Physo136707;constitutive=1;rank=2 scaffold_47 . CDS 432372 434201 . - 0 ID=Physo136707;Parent=Physo136707;rank=1 scaffold_47 . exon 432372 434201 . - . ID=Physo136707.1;Parent=Physo136707;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 434486 435120 . + . ID=Physo136708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470122;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 434486 435120 . + . ID=Physo136708;Parent=Physo136708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 434486 435120 . + . ID=Physo136708.1;Parent=Physo136708;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 434663 435118 . + 0 ID=Physo136708;Parent=Physo136708;rank=1 scaffold_47 ensembl protein_coding_gene 435118 437051 . - . ID=Physo136709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470123;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 435118 437051 . - . ID=Physo136709;Parent=Physo136709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 435118 435602 . - . ID=Physo136709.4;Parent=Physo136709;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_47 . CDS 435191 435602 . - 0 ID=Physo136709;Parent=Physo136709;rank=4 scaffold_47 . CDS 435674 435768 . - 0 ID=Physo136709;Parent=Physo136709;rank=3 scaffold_47 . exon 435674 435768 . - . ID=Physo136709.3;Parent=Physo136709;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_47 . CDS 435868 436817 . - 0 ID=Physo136709;Parent=Physo136709;rank=2 scaffold_47 . exon 435868 436817 . - . ID=Physo136709.2;Parent=Physo136709;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 436955 437051 . - 0 ID=Physo136709;Parent=Physo136709;rank=1 scaffold_47 . exon 436955 437051 . - . ID=Physo136709.1;Parent=Physo136709;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 ensembl protein_coding_gene 438562 440606 . + . ID=Physo136710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470124;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 438562 440606 . + . ID=Physo136710;Parent=Physo136710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 438562 440606 . + . ID=Physo136710.1;Parent=Physo136710;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 438573 440606 . + 0 ID=Physo136710;Parent=Physo136710;rank=1 scaffold_47 ensembl protein_coding_gene 440836 443140 . - . ID=Physo136711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470125;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 440836 443140 . - . ID=Physo136711;Parent=Physo136711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 440836 441087 . - 0 ID=Physo136711;Parent=Physo136711;rank=11 scaffold_47 . exon 440836 441087 . - . ID=Physo136711.11;Parent=Physo136711;constitutive=1;rank=11 scaffold_47 . CDS 441182 441241 . - 0 ID=Physo136711;Parent=Physo136711;rank=10 scaffold_47 . exon 441182 441241 . - . ID=Physo136711.10;Parent=Physo136711;constitutive=1;rank=10 scaffold_47 . CDS 441314 441442 . - 0 ID=Physo136711;Parent=Physo136711;rank=9 scaffold_47 . exon 441314 441442 . - . ID=Physo136711.9;Parent=Physo136711;constitutive=1;rank=9 scaffold_47 . CDS 441519 441577 . - 0 ID=Physo136711;Parent=Physo136711;rank=8 scaffold_47 . exon 441519 441577 . - . ID=Physo136711.8;Parent=Physo136711;constitutive=1;ensembl_phase=1;rank=8 scaffold_47 . CDS 441643 441736 . - 0 ID=Physo136711;Parent=Physo136711;rank=7 scaffold_47 . exon 441643 441736 . - . ID=Physo136711.7;Parent=Physo136711;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_47 . CDS 441805 441830 . - 0 ID=Physo136711;Parent=Physo136711;rank=6 scaffold_47 . exon 441805 441830 . - . ID=Physo136711.6;Parent=Physo136711;constitutive=1;ensembl_phase=1;rank=6 scaffold_47 . CDS 441897 441975 . - 0 ID=Physo136711;Parent=Physo136711;rank=5 scaffold_47 . exon 441897 441975 . - . ID=Physo136711.5;Parent=Physo136711;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_47 . CDS 442068 442317 . - 0 ID=Physo136711;Parent=Physo136711;rank=4 scaffold_47 . exon 442068 442317 . - . ID=Physo136711.4;Parent=Physo136711;constitutive=1;ensembl_phase=2;rank=4 scaffold_47 . CDS 442347 442458 . - 0 ID=Physo136711;Parent=Physo136711;rank=3 scaffold_47 . exon 442347 442458 . - . ID=Physo136711.3;Parent=Physo136711;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_47 . CDS 442480 442568 . - 0 ID=Physo136711;Parent=Physo136711;rank=2 scaffold_47 . exon 442480 442568 . - . ID=Physo136711.2;Parent=Physo136711;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_47 . CDS 442665 443140 . - 0 ID=Physo136711;Parent=Physo136711;rank=1 scaffold_47 . exon 442665 443140 . - . ID=Physo136711.1;Parent=Physo136711;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . repeat_region 448607 448614 . ? . description=dust scaffold_47 . biological_region 449417 449417 0.999 - . logic_name=eponine scaffold_47 . biological_region 449470 449473 0.999 + . logic_name=eponine scaffold_47 . repeat_region 450522 450532 . ? . description=dust scaffold_47 . biological_region 453038 453039 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 444487 446783 . - . ID=Physo136712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470126;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 444487 446783 . - . ID=Physo136712;Parent=Physo136712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 444487 445391 . - 0 ID=Physo136712;Parent=Physo136712;rank=4 scaffold_47 . exon 444487 445391 . - . ID=Physo136712.4;Parent=Physo136712;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 445418 445739 . - 0 ID=Physo136712;Parent=Physo136712;rank=3 scaffold_47 . exon 445418 445739 . - . ID=Physo136712.3;Parent=Physo136712;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 446020 446169 . - 0 ID=Physo136712;Parent=Physo136712;rank=2 scaffold_47 . exon 446020 446169 . - . ID=Physo136712.2;Parent=Physo136712;constitutive=1;rank=2 scaffold_47 . CDS 446205 446783 . - 0 ID=Physo136712;Parent=Physo136712;rank=1 scaffold_47 . exon 446205 446783 . - . ID=Physo136712.1;Parent=Physo136712;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 450539 452138 . - . ID=Physo136713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470127;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 450539 452138 . - . ID=Physo136713;Parent=Physo136713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 450539 450768 . - 0 ID=Physo136713;Parent=Physo136713;rank=4 scaffold_47 . exon 450539 450768 . - . ID=Physo136713.4;Parent=Physo136713;constitutive=1;ensembl_phase=1;rank=4 scaffold_47 . CDS 450888 451056 . - 0 ID=Physo136713;Parent=Physo136713;rank=3 scaffold_47 . exon 450888 451056 . - . ID=Physo136713.3;Parent=Physo136713;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_47 . CDS 451133 451335 . - 0 ID=Physo136713;Parent=Physo136713;rank=2 scaffold_47 . exon 451133 451335 . - . ID=Physo136713.2;Parent=Physo136713;constitutive=1;ensembl_phase=1;rank=2 scaffold_47 . CDS 451523 452138 . - 0 ID=Physo136713;Parent=Physo136713;rank=1 scaffold_47 . exon 451523 452138 . - . ID=Physo136713.1;Parent=Physo136713;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . repeat_region 455095 455272 . - . description=Polinton-1_PI scaffold_47 . repeat_region 455295 455361 . - . description=Polinton-1_PI scaffold_47 . repeat_region 455414 455711 . + . description=Polinton-1_PI scaffold_47 . repeat_region 455868 455898 . + . description=Polinton-1_PI scaffold_47 . repeat_region 461508 462706 . + . description=Polinton-1_PI scaffold_47 . repeat_region 462699 462915 . + . description=Polinton-1_PI scaffold_47 . repeat_region 463518 463837 . + . description=Polinton-1_PI scaffold_47 ensembl protein_coding_gene 455531 456536 . + . ID=Physo136714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470128;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 455531 456536 . + . ID=Physo136714;Parent=Physo136714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 455531 455743 . + . ID=Physo136714.1;Parent=Physo136714;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_47 . exon 455865 456096 . + . ID=Physo136714.2;Parent=Physo136714;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_47 . CDS 455985 456096 . + 0 ID=Physo136714;Parent=Physo136714;rank=1 scaffold_47 . CDS 456169 456536 . + 0 ID=Physo136714;Parent=Physo136714;rank=2 scaffold_47 . exon 456169 456536 . + . ID=Physo136714.3;Parent=Physo136714;constitutive=1;ensembl_phase=1;rank=3 scaffold_47 . repeat_region 463864 465232 . ? . description=dust scaffold_47 . repeat_region 467539 467739 . ? . description=trf scaffold_47 . biological_region 476965 476966 0.999 - . logic_name=eponine scaffold_47 . biological_region 477163 477168 0.999 - . logic_name=eponine scaffold_47 . biological_region 477267 477268 0.999 - . logic_name=eponine scaffold_47 . biological_region 477305 477310 0.999 - . logic_name=eponine scaffold_47 . biological_region 477710 477714 0.999 - . logic_name=eponine scaffold_47 . biological_region 478983 478986 0.999 + . logic_name=eponine scaffold_47 . biological_region 478985 478987 0.999 - . logic_name=eponine scaffold_47 . biological_region 480292 480294 0.999 + . logic_name=eponine scaffold_47 . biological_region 480397 480402 0.999 - . logic_name=eponine scaffold_47 . biological_region 480940 480945 0.999 - . logic_name=eponine scaffold_47 . biological_region 482087 482094 0.999 - . logic_name=eponine scaffold_47 ensembl protein_coding_gene 476750 477874 . + . ID=Physo108970;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_470009;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 476750 477874 . + . ID=Physo108970;Parent=Physo108970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . exon 476750 477874 . + . ID=Physo108970.1;Parent=Physo108970;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_47 . CDS 476752 477828 . + 0 ID=Physo108970;Parent=Physo108970;rank=1 scaffold_47 ensembl protein_coding_gene 478085 479108 . - . ID=Physo108971;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_470010;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 478085 479108 . - . ID=Physo108971;Parent=Physo108971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 478085 479083 . - 0 ID=Physo108971;Parent=Physo108971;rank=1 scaffold_47 . exon 478085 479108 . - . ID=Physo108971.1;Parent=Physo108971;constitutive=1;ensembl_phase=-1;rank=1 scaffold_47 ensembl protein_coding_gene 475073 476596 . + . ID=Physo136715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470129;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 475073 476596 . + . ID=Physo136715;Parent=Physo136715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 475073 475313 . + 0 ID=Physo136715;Parent=Physo136715;rank=1 scaffold_47 . exon 475073 475313 . + . ID=Physo136715.1;Parent=Physo136715;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_47 . CDS 475394 475583 . + 0 ID=Physo136715;Parent=Physo136715;rank=2 scaffold_47 . exon 475394 475583 . + . ID=Physo136715.2;Parent=Physo136715;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_47 . CDS 475663 476167 . + 0 ID=Physo136715;Parent=Physo136715;rank=3 scaffold_47 . exon 475663 476167 . + . ID=Physo136715.3;Parent=Physo136715;constitutive=1;ensembl_phase=2;rank=3 scaffold_47 . CDS 476238 476450 . + 0 ID=Physo136715;Parent=Physo136715;rank=4 scaffold_47 . exon 476238 476596 . + . ID=Physo136715.4;Parent=Physo136715;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_47 ensembl protein_coding_gene 479528 483690 . - . ID=Physo136718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470132;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 479528 483690 . - . ID=Physo136718;Parent=Physo136718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 479528 480028 . - 0 ID=Physo136718;Parent=Physo136718;rank=4 scaffold_47 . exon 479528 480028 . - . ID=Physo136718.4;Parent=Physo136718;constitutive=1;rank=4 scaffold_47 . CDS 480295 482655 . - 0 ID=Physo136718;Parent=Physo136718;rank=3 scaffold_47 . exon 480295 482655 . - . ID=Physo136718.3;Parent=Physo136718;constitutive=1;rank=3 scaffold_47 . CDS 482704 483540 . - 0 ID=Physo136718;Parent=Physo136718;rank=2 scaffold_47 . exon 482704 483540 . - . ID=Physo136718.2;Parent=Physo136718;constitutive=1;rank=2 scaffold_47 . CDS 483628 483690 . - 0 ID=Physo136718;Parent=Physo136718;rank=1 scaffold_47 . repeat_region 487114 487163 . ? . description=dust scaffold_47 . repeat_region 489031 489079 . ? . description=trf scaffold_47 . exon 483628 483690 . - . ID=Physo136718.1;Parent=Physo136718;constitutive=1;rank=1 scaffold_47 ensembl protein_coding_gene 484850 486727 . + . ID=Physo136719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470133;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 484850 486727 . + . ID=Physo136719;Parent=Physo136719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 484850 485812 . + 0 ID=Physo136719;Parent=Physo136719;rank=1 scaffold_47 . exon 484850 485812 . + . ID=Physo136719.1;Parent=Physo136719;constitutive=1;rank=1 scaffold_47 . CDS 485879 486727 . + 0 ID=Physo136719;Parent=Physo136719;rank=2 scaffold_47 . exon 485879 486727 . + . ID=Physo136719.2;Parent=Physo136719;constitutive=1;rank=2 scaffold_47 ensembl protein_coding_gene 490988 495193 . + . ID=Physo136720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470134;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 490988 495193 . + . ID=Physo136720;Parent=Physo136720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 490988 495193 . + 0 ID=Physo136720;Parent=Physo136720;rank=1 scaffold_47 . exon 490988 495193 . + . ID=Physo136720.1;Parent=Physo136720;constitutive=1;rank=1 scaffold_47 . biological_region 493734 493739 0.999 + . logic_name=eponine scaffold_47 . biological_region 494291 494295 0.999 + . logic_name=eponine scaffold_47 . biological_region 494378 494379 0.999 + . logic_name=eponine scaffold_47 ensembl protein_coding_gene 496787 497759 . + . ID=Physo136721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_470135;logic_name=jgi_physo1_1 scaffold_47 ensembl transcript 496787 497759 . + . ID=Physo136721;Parent=Physo136721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_47 . CDS 496787 496929 . + 0 ID=Physo136721;Parent=Physo136721;rank=1 scaffold_47 . exon 496787 496929 . + . ID=Physo136721.1;Parent=Physo136721;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_47 . CDS 496964 497759 . + 0 ID=Physo136721;Parent=Physo136721;rank=2 scaffold_47 . exon 496964 497759 . + . ID=Physo136721.2;Parent=Physo136721;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_46 1 505644 scaffold_46 . biological_region 1169 1172 0.999 - . logic_name=eponine scaffold_46 . repeat_region 3068 3075 . ? . description=dust scaffold_46 . biological_region 7923 7928 0.999 + . logic_name=eponine scaffold_46 . biological_region 7961 7964 0.999 - . logic_name=eponine scaffold_46 . biological_region 7967 7977 0.999 + . logic_name=eponine scaffold_46 . biological_region 8156 8157 0.999 - . logic_name=eponine scaffold_46 . repeat_region 8530 8544 . ? . description=dust scaffold_46 . biological_region 8651 8652 0.999 + . logic_name=eponine scaffold_46 . biological_region 8822 8827 0.999 + . logic_name=eponine scaffold_46 . biological_region 8897 8902 0.999 + . logic_name=eponine scaffold_46 . biological_region 9003 9006 0.999 - . logic_name=eponine scaffold_46 . biological_region 9539 9539 0.999 - . logic_name=eponine scaffold_46 . biological_region 9762 9763 0.999 + . logic_name=eponine scaffold_46 . biological_region 9813 9825 0.999 + . logic_name=eponine scaffold_46 . biological_region 9865 9872 0.999 + . logic_name=eponine scaffold_46 . biological_region 9878 9878 0.999 - . logic_name=eponine scaffold_46 ensembl protein_coding_gene 8533 11492 . + . ID=Physo108954;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_460001;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 8533 11492 . + . ID=Physo108954;Parent=Physo108954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 8533 11492 . + . ID=Physo108954.1;Parent=Physo108954;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 8553 11255 . + 0 ID=Physo108954;Parent=Physo108954;rank=1 scaffold_46 ensembl protein_coding_gene 5756 7473 . - . ID=Physo136455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460001;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 5756 7473 . - . ID=Physo136455;Parent=Physo136455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 5756 5970 . - 0 ID=Physo136455;Parent=Physo136455;rank=7 scaffold_46 . exon 5756 5970 . - . ID=Physo136455.7;Parent=Physo136455;constitutive=1;ensembl_phase=1;rank=7 scaffold_46 . CDS 6037 6329 . - 0 ID=Physo136455;Parent=Physo136455;rank=6 scaffold_46 . exon 6037 6329 . - . ID=Physo136455.6;Parent=Physo136455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_46 . CDS 6417 6510 . - 0 ID=Physo136455;Parent=Physo136455;rank=5 scaffold_46 . exon 6417 6510 . - . ID=Physo136455.5;Parent=Physo136455;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_46 . CDS 6620 6916 . - 0 ID=Physo136455;Parent=Physo136455;rank=4 scaffold_46 . exon 6620 6916 . - . ID=Physo136455.4;Parent=Physo136455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 7054 7189 . - 0 ID=Physo136455;Parent=Physo136455;rank=3 scaffold_46 . exon 7054 7189 . - . ID=Physo136455.3;Parent=Physo136455;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_46 . CDS 7246 7417 . - 0 ID=Physo136455;Parent=Physo136455;rank=2 scaffold_46 . exon 7246 7417 . - . ID=Physo136455.2;Parent=Physo136455;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 7448 7473 . - 0 ID=Physo136455;Parent=Physo136455;rank=1 scaffold_46 . exon 7448 7473 . - . ID=Physo136455.1;Parent=Physo136455;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . repeat_region 18785 18891 . + . description=Polinton-1_PI scaffold_46 . repeat_region 18982 19057 . - . description=Polinton-1_PI scaffold_46 . repeat_region 19076 19174 . - . description=Polinton-1_PI scaffold_46 . repeat_region 19633 19949 . + . description=Polinton-1_PI scaffold_46 ensembl protein_coding_gene 13636 16033 . - . ID=Physo136457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460003;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 13636 16033 . - . ID=Physo136457;Parent=Physo136457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 13636 15745 . - . ID=Physo136457.2;Parent=Physo136457;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_46 . CDS 13711 15705 . - 0 ID=Physo136457;Parent=Physo136457;rank=1 scaffold_46 . exon 16026 16033 . - . ID=Physo136457.1;Parent=Physo136457;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 17659 18832 . + . ID=Physo136458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460004;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 17659 18832 . + . ID=Physo136458;Parent=Physo136458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 17659 18276 . + 0 ID=Physo136458;Parent=Physo136458;rank=1 scaffold_46 . exon 17659 18276 . + . ID=Physo136458.1;Parent=Physo136458;constitutive=1;rank=1 scaffold_46 . CDS 18311 18832 . + 0 ID=Physo136458;Parent=Physo136458;rank=2 scaffold_46 . exon 18311 18832 . + . ID=Physo136458.2;Parent=Physo136458;constitutive=1;rank=2 scaffold_46 . repeat_region 22286 22895 . ? . description=dust scaffold_46 . repeat_region 24228 24235 . ? . description=dust scaffold_46 . repeat_region 24633 29744 . ? . description=dust scaffold_46 . repeat_region 29745 30396 . ? . description=dust scaffold_46 . repeat_region 31125 31363 . - . description=Polinton-1_PI scaffold_46 . repeat_region 33394 33431 . ? . description=trf scaffold_46 . biological_region 34358 34363 0.999 + . logic_name=eponine scaffold_46 . biological_region 34413 34414 0.999 - . logic_name=eponine scaffold_46 . biological_region 35884 35886 0.999 + . logic_name=eponine scaffold_46 . repeat_region 38616 38647 . ? . description=trf scaffold_46 ensembl protein_coding_gene 34263 35724 . + . ID=Physo108955;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_460002;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 34263 35724 . + . ID=Physo108955;Parent=Physo108955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 34263 34784 . + 0 ID=Physo108955;Parent=Physo108955;rank=1 scaffold_46 . exon 34263 34784 . + . ID=Physo108955.1;Parent=Physo108955;constitutive=1;rank=1 scaffold_46 . CDS 34825 35724 . + 0 ID=Physo108955;Parent=Physo108955;rank=2 scaffold_46 . exon 34825 35724 . + . ID=Physo108955.2;Parent=Physo108955;constitutive=1;rank=2 scaffold_46 ensembl protein_coding_gene 30397 31300 . - . ID=Physo117798;biotype=protein_coding;external_name=estExt_Genewise1.C_460057;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 30397 31300 . - . ID=Physo117798;Parent=Physo117798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 30397 31300 . - . ID=Physo117798.1;Parent=Physo117798;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 30423 31289 . - 0 ID=Physo117798;Parent=Physo117798;rank=1 scaffold_46 ensembl protein_coding_gene 32954 33924 . + . ID=Physo136460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460006;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 32954 33924 . + . ID=Physo136460;Parent=Physo136460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 32954 33504 . + 0 ID=Physo136460;Parent=Physo136460;rank=1 scaffold_46 . exon 32954 33504 . + . ID=Physo136460.1;Parent=Physo136460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 33921 33924 . + 0 ID=Physo136460;Parent=Physo136460;rank=2 scaffold_46 . exon 33921 33924 . + . ID=Physo136460.2;Parent=Physo136460;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . repeat_region 45182 45190 . ? . description=dust scaffold_46 ensembl protein_coding_gene 40521 42589 . + . ID=Physo136462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460008;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 40521 42589 . + . ID=Physo136462;Parent=Physo136462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 40521 41180 . + 0 ID=Physo136462;Parent=Physo136462;rank=1 scaffold_46 . exon 40521 41180 . + . ID=Physo136462.1;Parent=Physo136462;constitutive=1;rank=1 scaffold_46 . CDS 41234 42514 . + 0 ID=Physo136462;Parent=Physo136462;rank=2 scaffold_46 . exon 41234 42589 . + . ID=Physo136462.2;Parent=Physo136462;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_46 ensembl protein_coding_gene 42839 45157 . + . ID=Physo136463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460009;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 42839 45157 . + . ID=Physo136463;Parent=Physo136463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 42839 45157 . + 0 ID=Physo136463;Parent=Physo136463;rank=1 scaffold_46 . exon 42839 45157 . + . ID=Physo136463.1;Parent=Physo136463;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 48200 50260 . + . ID=Physo136465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460011;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 48200 50260 . + . ID=Physo136465;Parent=Physo136465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 48200 50260 . + 0 ID=Physo136465;Parent=Physo136465;rank=1 scaffold_46 . exon 48200 50260 . + . ID=Physo136465.1;Parent=Physo136465;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 45781 47836 . + . ID=Physo157415;biotype=protein_coding;external_name=C_scaffold_46000001;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 45781 47836 . + . ID=Physo157415;Parent=Physo157415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 45781 45858 . + 0 ID=Physo157415;Parent=Physo157415;rank=1 scaffold_46 . exon 45781 45858 . + . ID=Physo157415.1;Parent=Physo157415;constitutive=1;rank=1 scaffold_46 . CDS 45924 46102 . + 0 ID=Physo157415;Parent=Physo157415;rank=2 scaffold_46 . exon 45924 46102 . + . ID=Physo157415.2;Parent=Physo157415;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 46267 46387 . + 0 ID=Physo157415;Parent=Physo157415;rank=3 scaffold_46 . exon 46267 46387 . + . ID=Physo157415.3;Parent=Physo157415;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 46451 46489 . + 0 ID=Physo157415;Parent=Physo157415;rank=4 scaffold_46 . exon 46451 46489 . + . ID=Physo157415.4;Parent=Physo157415;constitutive=1;rank=4 scaffold_46 . CDS 46694 47836 . + 0 ID=Physo157415;Parent=Physo157415;rank=5 scaffold_46 . exon 46694 47836 . + . ID=Physo157415.5;Parent=Physo157415;constitutive=1;rank=5 scaffold_46 . biological_region 55094 55095 0.999 + . logic_name=eponine scaffold_46 . repeat_region 57193 57215 . ? . description=trf scaffold_46 . biological_region 57560 57561 0.999 + . logic_name=eponine scaffold_46 . biological_region 57986 57990 0.999 - . logic_name=eponine scaffold_46 . biological_region 58035 58039 0.999 - . logic_name=eponine scaffold_46 . biological_region 58729 58729 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 50368 51098 . - . ID=Physo136466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460012;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 50368 51098 . - . ID=Physo136466;Parent=Physo136466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 50368 51098 . - . ID=Physo136466.1;Parent=Physo136466;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_46 . CDS 50460 51098 . - 0 ID=Physo136466;Parent=Physo136466;rank=1 scaffold_46 ensembl protein_coding_gene 56555 58013 . - . ID=Physo136467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460013;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 56555 58013 . - . ID=Physo136467;Parent=Physo136467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 56555 56609 . - 0 ID=Physo136467;Parent=Physo136467;rank=2 scaffold_46 . exon 56555 56609 . - . ID=Physo136467.2;Parent=Physo136467;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 56827 58013 . - 0 ID=Physo136467;Parent=Physo136467;rank=1 scaffold_46 . exon 56827 58013 . - . ID=Physo136467.1;Parent=Physo136467;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 58339 59156 . - . ID=Physo136468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460014;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 58339 59156 . - . ID=Physo136468;Parent=Physo136468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 58339 58497 . - 0 ID=Physo136468;Parent=Physo136468;rank=5 scaffold_46 . exon 58339 58497 . - . ID=Physo136468.5;Parent=Physo136468;constitutive=1;rank=5 scaffold_46 . CDS 58564 58713 . - 0 ID=Physo136468;Parent=Physo136468;rank=4 scaffold_46 . exon 58564 58713 . - . ID=Physo136468.4;Parent=Physo136468;constitutive=1;rank=4 scaffold_46 . CDS 58772 58822 . - 0 ID=Physo136468;Parent=Physo136468;rank=3 scaffold_46 . exon 58772 58822 . - . ID=Physo136468.3;Parent=Physo136468;constitutive=1;rank=3 scaffold_46 . CDS 58897 58944 . - 0 ID=Physo136468;Parent=Physo136468;rank=2 scaffold_46 . exon 58897 58944 . - . ID=Physo136468.2;Parent=Physo136468;constitutive=1;rank=2 scaffold_46 . CDS 59016 59156 . - 0 ID=Physo136468;Parent=Physo136468;rank=1 scaffold_46 . exon 59016 59156 . - . ID=Physo136468.1;Parent=Physo136468;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 59324 60511 . - . ID=Physo136469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460015;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 59324 60511 . - . ID=Physo136469;Parent=Physo136469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 59324 60511 . - 0 ID=Physo136469;Parent=Physo136469;rank=1 scaffold_46 . exon 59324 60511 . - . ID=Physo136469.1;Parent=Physo136469;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 51904 52607 . - . ID=Physo157417;biotype=protein_coding;external_name=C_scaffold_46000003;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 51904 52607 . - . ID=Physo157417;Parent=Physo157417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 51904 51940 . - 0 ID=Physo157417;Parent=Physo157417;rank=3 scaffold_46 . exon 51904 51940 . - . ID=Physo157417.3;Parent=Physo157417;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 52021 52282 . - 0 ID=Physo157417;Parent=Physo157417;rank=2 scaffold_46 . exon 52021 52282 . - . ID=Physo157417.2;Parent=Physo157417;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_46 . CDS 52493 52607 . - 0 ID=Physo157417;Parent=Physo157417;rank=1 scaffold_46 . exon 52493 52607 . - . ID=Physo157417.1;Parent=Physo157417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . repeat_region 63981 63988 . ? . description=dust scaffold_46 ensembl protein_coding_gene 68103 70094 . + . ID=Physo108956;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_460003;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 68103 70094 . + . ID=Physo108956;Parent=Physo108956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 68103 68160 . + . ID=Physo108956.1;Parent=Physo108956;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 68134 68160 . + 0 ID=Physo108956;Parent=Physo108956;rank=1 scaffold_46 . CDS 68215 69648 . + 0 ID=Physo108956;Parent=Physo108956;rank=2 scaffold_46 . exon 68215 69648 . + . ID=Physo108956.2;Parent=Physo108956;constitutive=1;rank=2 scaffold_46 . CDS 69739 69861 . + 0 ID=Physo108956;Parent=Physo108956;rank=3 scaffold_46 . repeat_region 69659 69699 . ? . description=trf scaffold_46 . biological_region 72089 72090 0.999 - . logic_name=eponine scaffold_46 . biological_region 72107 72109 0.999 - . logic_name=eponine scaffold_46 . biological_region 72410 72411 0.999 - . logic_name=eponine scaffold_46 . biological_region 72946 72946 0.999 - . logic_name=eponine scaffold_46 . repeat_region 75447 75532 . ? . description=trf scaffold_46 . biological_region 76880 76882 0.999 + . logic_name=eponine scaffold_46 . repeat_region 78698 78722 . ? . description=trf scaffold_46 . biological_region 78770 78775 0.999 + . logic_name=eponine scaffold_46 . biological_region 78861 78864 0.999 - . logic_name=eponine scaffold_46 . biological_region 78901 78905 0.999 - . logic_name=eponine scaffold_46 . exon 69739 70094 . + . ID=Physo108956.3;Parent=Physo108956;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_46 ensembl protein_coding_gene 70117 77258 . - . ID=Physo136471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460017;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 70117 77258 . - . ID=Physo136471;Parent=Physo136471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 70117 76666 . - 0 ID=Physo136471;Parent=Physo136471;rank=2 scaffold_46 . exon 70117 76666 . - . ID=Physo136471.2;Parent=Physo136471;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 76744 77258 . - 0 ID=Physo136471;Parent=Physo136471;rank=1 scaffold_46 . exon 76744 77258 . - . ID=Physo136471.1;Parent=Physo136471;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 78744 83836 . + . ID=Physo136472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460018;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 78744 83836 . + . ID=Physo136472;Parent=Physo136472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 78744 78958 . + 0 ID=Physo136472;Parent=Physo136472;rank=1 scaffold_46 . exon 78744 78958 . + . ID=Physo136472.1;Parent=Physo136472;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 79033 83623 . + 0 ID=Physo136472;Parent=Physo136472;rank=2 scaffold_46 . exon 79033 83836 . + . ID=Physo136472.2;Parent=Physo136472;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_46 ensembl protein_coding_gene 88543 89936 . - . ID=Physo136473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460019;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 88543 89936 . - . ID=Physo136473;Parent=Physo136473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 88543 88559 . - 0 ID=Physo136473;Parent=Physo136473;rank=2 scaffold_46 . exon 88543 88559 . - . ID=Physo136473.2;Parent=Physo136473;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 88658 89936 . - 0 ID=Physo136473;Parent=Physo136473;rank=1 scaffold_46 . exon 88658 89936 . - . ID=Physo136473.1;Parent=Physo136473;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . biological_region 89464 89469 0.999 + . logic_name=eponine scaffold_46 . biological_region 89680 89681 0.999 + . logic_name=eponine scaffold_46 . biological_region 89692 89696 0.999 - . logic_name=eponine scaffold_46 . biological_region 89747 89752 0.999 + . logic_name=eponine scaffold_46 . biological_region 90267 90271 0.999 + . logic_name=eponine scaffold_46 . biological_region 90370 90372 0.999 - . logic_name=eponine scaffold_46 . biological_region 90646 90650 0.999 + . logic_name=eponine scaffold_46 . biological_region 97612 97614 0.999 - . logic_name=eponine scaffold_46 . biological_region 97853 97855 0.999 - . logic_name=eponine scaffold_46 . biological_region 97920 97923 0.999 - . logic_name=eponine scaffold_46 . biological_region 98027 98034 0.999 - . logic_name=eponine scaffold_46 . biological_region 99075 99080 0.999 + . logic_name=eponine scaffold_46 . biological_region 99129 99132 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 97320 98060 . + . ID=Physo136475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460021;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 97320 98060 . + . ID=Physo136475;Parent=Physo136475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 97320 98060 . + 0 ID=Physo136475;Parent=Physo136475;rank=1 scaffold_46 . exon 97320 98060 . + . ID=Physo136475.1;Parent=Physo136475;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 98855 99799 . + . ID=Physo136476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460022;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 98855 99799 . + . ID=Physo136476;Parent=Physo136476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 98855 99799 . + . ID=Physo136476.1;Parent=Physo136476;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 98897 99697 . + 0 ID=Physo136476;Parent=Physo136476;rank=1 scaffold_46 ensembl protein_coding_gene 90099 94378 . - . ID=Physo157418;biotype=protein_coding;external_name=C_scaffold_46000004;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 90099 94378 . - . ID=Physo157418;Parent=Physo157418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 90099 90184 . - 0 ID=Physo157418;Parent=Physo157418;rank=15 scaffold_46 . exon 90099 90184 . - . ID=Physo157418.15;Parent=Physo157418;constitutive=1;ensembl_phase=1;rank=15 scaffold_46 . CDS 90250 90453 . - 0 ID=Physo157418;Parent=Physo157418;rank=14 scaffold_46 . exon 90250 90453 . - . ID=Physo157418.14;Parent=Physo157418;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_46 . CDS 90522 90766 . - 0 ID=Physo157418;Parent=Physo157418;rank=13 scaffold_46 . exon 90522 90766 . - . ID=Physo157418.13;Parent=Physo157418;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_46 . CDS 90815 90950 . - 0 ID=Physo157418;Parent=Physo157418;rank=12 scaffold_46 . exon 90815 90950 . - . ID=Physo157418.12;Parent=Physo157418;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_46 . CDS 91037 91112 . - 0 ID=Physo157418;Parent=Physo157418;rank=11 scaffold_46 . exon 91037 91112 . - . ID=Physo157418.11;Parent=Physo157418;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_46 . CDS 91175 91459 . - 0 ID=Physo157418;Parent=Physo157418;rank=10 scaffold_46 . exon 91175 91459 . - . ID=Physo157418.10;Parent=Physo157418;constitutive=1;rank=10 scaffold_46 . CDS 91511 91823 . - 0 ID=Physo157418;Parent=Physo157418;rank=9 scaffold_46 . exon 91511 91823 . - . ID=Physo157418.9;Parent=Physo157418;constitutive=1;ensembl_phase=2;rank=9 scaffold_46 . CDS 91898 92121 . - 0 ID=Physo157418;Parent=Physo157418;rank=8 scaffold_46 . exon 91898 92121 . - . ID=Physo157418.8;Parent=Physo157418;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_46 . CDS 92188 92733 . - 0 ID=Physo157418;Parent=Physo157418;rank=7 scaffold_46 . exon 92188 92733 . - . ID=Physo157418.7;Parent=Physo157418;constitutive=1;rank=7 scaffold_46 . CDS 92805 93002 . - 0 ID=Physo157418;Parent=Physo157418;rank=6 scaffold_46 . exon 92805 93002 . - . ID=Physo157418.6;Parent=Physo157418;constitutive=1;rank=6 scaffold_46 . CDS 93074 93184 . - 0 ID=Physo157418;Parent=Physo157418;rank=5 scaffold_46 . exon 93074 93184 . - . ID=Physo157418.5;Parent=Physo157418;constitutive=1;rank=5 scaffold_46 . CDS 93218 93457 . - 0 ID=Physo157418;Parent=Physo157418;rank=4 scaffold_46 . exon 93218 93457 . - . ID=Physo157418.4;Parent=Physo157418;constitutive=1;rank=4 scaffold_46 . CDS 93542 93753 . - 0 ID=Physo157418;Parent=Physo157418;rank=3 scaffold_46 . exon 93542 93753 . - . ID=Physo157418.3;Parent=Physo157418;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 93778 93926 . - 0 ID=Physo157418;Parent=Physo157418;rank=2 scaffold_46 . exon 93778 93926 . - . ID=Physo157418.2;Parent=Physo157418;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 93999 94378 . - 0 ID=Physo157418;Parent=Physo157418;rank=1 scaffold_46 . exon 93999 94378 . - . ID=Physo157418.1;Parent=Physo157418;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 100177 101306 . + . ID=Physo136477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460023;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 100177 101306 . + . ID=Physo136477;Parent=Physo136477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 100177 100306 . + 0 ID=Physo136477;Parent=Physo136477;rank=1 scaffold_46 . exon 100177 100306 . + . ID=Physo136477.1;Parent=Physo136477;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 100370 100566 . + 0 ID=Physo136477;Parent=Physo136477;rank=2 scaffold_46 . exon 100370 100566 . + . ID=Physo136477.2;Parent=Physo136477;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 100612 100706 . + 0 ID=Physo136477;Parent=Physo136477;rank=3 scaffold_46 . exon 100612 100706 . + . ID=Physo136477.3;Parent=Physo136477;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_46 . CDS 100784 101306 . + 0 ID=Physo136477;Parent=Physo136477;rank=4 scaffold_46 . exon 100784 101306 . + . ID=Physo136477.4;Parent=Physo136477;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 ensembl protein_coding_gene 101482 102330 . - . ID=Physo136478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460024;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 101482 102330 . - . ID=Physo136478;Parent=Physo136478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 101482 101810 . - . ID=Physo136478.3;Parent=Physo136478;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_46 . CDS 101516 101810 . - 0 ID=Physo136478;Parent=Physo136478;rank=3 scaffold_46 . CDS 101883 102177 . - 0 ID=Physo136478;Parent=Physo136478;rank=2 scaffold_46 . exon 101883 102177 . - . ID=Physo136478.2;Parent=Physo136478;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_46 . CDS 102264 102330 . - 0 ID=Physo136478;Parent=Physo136478;rank=1 scaffold_46 . exon 102264 102330 . - . ID=Physo136478.1;Parent=Physo136478;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 102650 104756 . + . ID=Physo136479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460025;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 102650 104756 . + . ID=Physo136479;Parent=Physo136479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 102650 102658 . + 0 ID=Physo136479;Parent=Physo136479;rank=1 scaffold_46 . exon 102650 102658 . + . ID=Physo136479.1;Parent=Physo136479;constitutive=1;rank=1 scaffold_46 . CDS 102751 102874 . + 0 ID=Physo136479;Parent=Physo136479;rank=2 scaffold_46 . exon 102751 102874 . + . ID=Physo136479.2;Parent=Physo136479;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 102962 103415 . + 0 ID=Physo136479;Parent=Physo136479;rank=3 scaffold_46 . exon 102962 103415 . + . ID=Physo136479.3;Parent=Physo136479;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_46 . CDS 103484 103620 . + 0 ID=Physo136479;Parent=Physo136479;rank=4 scaffold_46 . exon 103484 103620 . + . ID=Physo136479.4;Parent=Physo136479;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_46 . CDS 103736 103814 . + 0 ID=Physo136479;Parent=Physo136479;rank=5 scaffold_46 . exon 103736 103814 . + . ID=Physo136479.5;Parent=Physo136479;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_46 . CDS 103902 104412 . + 0 ID=Physo136479;Parent=Physo136479;rank=6 scaffold_46 . exon 103902 104412 . + . ID=Physo136479.6;Parent=Physo136479;constitutive=1;ensembl_phase=2;rank=6 scaffold_46 . CDS 104488 104556 . + 0 ID=Physo136479;Parent=Physo136479;rank=7 scaffold_46 . exon 104488 104556 . + . ID=Physo136479.7;Parent=Physo136479;constitutive=1;rank=7 scaffold_46 . CDS 104634 104756 . + 0 ID=Physo136479;Parent=Physo136479;rank=8 scaffold_46 . exon 104634 104756 . + . ID=Physo136479.8;Parent=Physo136479;constitutive=1;rank=8 scaffold_46 ensembl protein_coding_gene 104990 105925 . - . ID=Physo136480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460026;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 104990 105925 . - . ID=Physo136480;Parent=Physo136480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 104990 105925 . - 0 ID=Physo136480;Parent=Physo136480;rank=1 scaffold_46 . exon 104990 105925 . - . ID=Physo136480.1;Parent=Physo136480;constitutive=1;rank=1 scaffold_46 . repeat_region 110871 110879 . ? . description=dust scaffold_46 . biological_region 112204 112206 0.999 - . logic_name=eponine scaffold_46 . repeat_region 112804 112868 . ? . description=trf scaffold_46 . repeat_region 113214 113265 . ? . description=trf scaffold_46 . repeat_region 113214 113269 . ? . description=trf scaffold_46 . biological_region 114253 114261 0.999 + . logic_name=eponine scaffold_46 . biological_region 114324 114327 0.999 + . logic_name=eponine scaffold_46 . biological_region 114333 114334 0.999 - . logic_name=eponine scaffold_46 . biological_region 114549 114555 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 111882 114908 . - . ID=Physo136481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460027;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 111882 114908 . - . ID=Physo136481;Parent=Physo136481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 111882 112669 . - 0 ID=Physo136481;Parent=Physo136481;rank=2 scaffold_46 . exon 111882 112669 . - . ID=Physo136481.2;Parent=Physo136481;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 112886 114908 . - 0 ID=Physo136481;Parent=Physo136481;rank=1 scaffold_46 . exon 112886 114908 . - . ID=Physo136481.1;Parent=Physo136481;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 121268 123730 . - . ID=Physo136482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460028;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 121268 123730 . - . ID=Physo136482;Parent=Physo136482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 121268 123730 . - . ID=Physo136482.1;Parent=Physo136482;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_46 . CDS 121460 123730 . - 0 ID=Physo136482;Parent=Physo136482;rank=1 scaffold_46 ensembl protein_coding_gene 126465 126846 . + . ID=Physo136483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460029;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 126465 126846 . + . ID=Physo136483;Parent=Physo136483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 126465 126729 . + 0 ID=Physo136483;Parent=Physo136483;rank=1 scaffold_46 . exon 126465 126729 . + . ID=Physo136483.1;Parent=Physo136483;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 126752 126846 . + 0 ID=Physo136483;Parent=Physo136483;rank=2 scaffold_46 . exon 126752 126846 . + . ID=Physo136483.2;Parent=Physo136483;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . biological_region 134786 134792 0.999 + . logic_name=eponine scaffold_46 . biological_region 138236 138238 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 133134 133676 . + . ID=Physo136484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460030;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 133134 133676 . + . ID=Physo136484;Parent=Physo136484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 133134 133676 . + 0 ID=Physo136484;Parent=Physo136484;rank=1 scaffold_46 . exon 133134 133676 . + . ID=Physo136484.1;Parent=Physo136484;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 133746 134264 . - . ID=Physo136485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460031;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 133746 134264 . - . ID=Physo136485;Parent=Physo136485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 133746 134264 . - 0 ID=Physo136485;Parent=Physo136485;rank=1 scaffold_46 . exon 133746 134264 . - . ID=Physo136485.1;Parent=Physo136485;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 134730 137126 . + . ID=Physo136486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460032;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 134730 137126 . + . ID=Physo136486;Parent=Physo136486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 134730 135158 . + 0 ID=Physo136486;Parent=Physo136486;rank=1 scaffold_46 . exon 134730 135158 . + . ID=Physo136486.1;Parent=Physo136486;constitutive=1;rank=1 scaffold_46 . CDS 135263 135763 . + 0 ID=Physo136486;Parent=Physo136486;rank=2 scaffold_46 . exon 135263 135763 . + . ID=Physo136486.2;Parent=Physo136486;constitutive=1;rank=2 scaffold_46 . CDS 136121 136868 . + 0 ID=Physo136486;Parent=Physo136486;rank=3 scaffold_46 . exon 136121 136868 . + . ID=Physo136486.3;Parent=Physo136486;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_46 . CDS 136987 137126 . + 0 ID=Physo136486;Parent=Physo136486;rank=4 scaffold_46 . exon 136987 137126 . + . ID=Physo136486.4;Parent=Physo136486;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 ensembl protein_coding_gene 137386 139785 . - . ID=Physo136487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460033;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 137386 139785 . - . ID=Physo136487;Parent=Physo136487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 137386 137482 . - 0 ID=Physo136487;Parent=Physo136487;rank=2 scaffold_46 . exon 137386 137482 . - . ID=Physo136487.2;Parent=Physo136487;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 137600 139785 . - 0 ID=Physo136487;Parent=Physo136487;rank=1 scaffold_46 . exon 137600 139785 . - . ID=Physo136487.1;Parent=Physo136487;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . repeat_region 139378 139385 . ? . description=dust scaffold_46 . repeat_region 139741 139763 . ? . description=dust scaffold_46 . repeat_region 143635 143654 . ? . description=trf scaffold_46 . repeat_region 143996 144023 . ? . description=dust scaffold_46 . repeat_region 143996 144023 . ? . description=trf scaffold_46 ensembl protein_coding_gene 143550 144965 . + . ID=Physo117821;biotype=protein_coding;external_name=estExt_Genewise1.C_460080;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 143550 144965 . + . ID=Physo117821;Parent=Physo117821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 143550 143939 . + . ID=Physo117821.1;Parent=Physo117821;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 143571 143939 . + 0 ID=Physo117821;Parent=Physo117821;rank=1 scaffold_46 . CDS 144027 144640 . + 0 ID=Physo117821;Parent=Physo117821;rank=2 scaffold_46 . exon 144027 144640 . + . ID=Physo117821.2;Parent=Physo117821;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 144706 144804 . + 0 ID=Physo117821;Parent=Physo117821;rank=3 scaffold_46 . exon 144706 144804 . + . ID=Physo117821.3;Parent=Physo117821;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_46 . CDS 144866 144965 . + 0 ID=Physo117821;Parent=Physo117821;rank=4 scaffold_46 . exon 144866 144965 . + . ID=Physo117821.4;Parent=Physo117821;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 ensembl protein_coding_gene 141029 143279 . - . ID=Physo136488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460034;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 141029 143279 . - . ID=Physo136488;Parent=Physo136488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 141029 141181 . - 0 ID=Physo136488;Parent=Physo136488;rank=7 scaffold_46 . exon 141029 141181 . - . ID=Physo136488.7;Parent=Physo136488;constitutive=1;rank=7 scaffold_46 . CDS 141267 141597 . - 0 ID=Physo136488;Parent=Physo136488;rank=6 scaffold_46 . exon 141267 141597 . - . ID=Physo136488.6;Parent=Physo136488;constitutive=1;ensembl_phase=2;rank=6 scaffold_46 . CDS 141700 141998 . - 0 ID=Physo136488;Parent=Physo136488;rank=5 scaffold_46 . exon 141700 141998 . - . ID=Physo136488.5;Parent=Physo136488;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_46 . CDS 142090 142129 . - 0 ID=Physo136488;Parent=Physo136488;rank=4 scaffold_46 . exon 142090 142129 . - . ID=Physo136488.4;Parent=Physo136488;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . CDS 142378 142611 . - 0 ID=Physo136488;Parent=Physo136488;rank=3 scaffold_46 . exon 142378 142611 . - . ID=Physo136488.3;Parent=Physo136488;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_46 . CDS 142689 142854 . - 0 ID=Physo136488;Parent=Physo136488;rank=2 scaffold_46 . exon 142689 142854 . - . ID=Physo136488.2;Parent=Physo136488;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_46 . CDS 142940 143279 . - 0 ID=Physo136488;Parent=Physo136488;rank=1 scaffold_46 . exon 142940 143279 . - . ID=Physo136488.1;Parent=Physo136488;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 146227 148542 . + . ID=Physo136490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460036;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 146227 148542 . + . ID=Physo136490;Parent=Physo136490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 146227 146562 . + 0 ID=Physo136490;Parent=Physo136490;rank=1 scaffold_46 . exon 146227 146562 . + . ID=Physo136490.1;Parent=Physo136490;constitutive=1;rank=1 scaffold_46 . CDS 146640 147239 . + 0 ID=Physo136490;Parent=Physo136490;rank=2 scaffold_46 . exon 146640 147239 . + . ID=Physo136490.2;Parent=Physo136490;constitutive=1;rank=2 scaffold_46 . CDS 147313 147399 . + 0 ID=Physo136490;Parent=Physo136490;rank=3 scaffold_46 . exon 147313 147399 . + . ID=Physo136490.3;Parent=Physo136490;constitutive=1;rank=3 scaffold_46 . CDS 147473 147793 . + 0 ID=Physo136490;Parent=Physo136490;rank=4 scaffold_46 . exon 147473 147793 . + . ID=Physo136490.4;Parent=Physo136490;constitutive=1;rank=4 scaffold_46 . CDS 147862 147995 . + 0 ID=Physo136490;Parent=Physo136490;rank=5 scaffold_46 . exon 147862 147995 . + . ID=Physo136490.5;Parent=Physo136490;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_46 . CDS 148069 148164 . + 0 ID=Physo136490;Parent=Physo136490;rank=6 scaffold_46 . exon 148069 148164 . + . ID=Physo136490.6;Parent=Physo136490;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_46 . CDS 148230 148311 . + 0 ID=Physo136490;Parent=Physo136490;rank=7 scaffold_46 . exon 148230 148311 . + . ID=Physo136490.7;Parent=Physo136490;constitutive=1;ensembl_phase=2;rank=7 scaffold_46 . CDS 148387 148542 . + 0 ID=Physo136490;Parent=Physo136490;rank=8 scaffold_46 . exon 148387 148542 . + . ID=Physo136490.8;Parent=Physo136490;constitutive=1;rank=8 scaffold_46 . biological_region 152426 152426 0.999 - . logic_name=eponine scaffold_46 . repeat_region 153450 153586 . + . description=GA-rich scaffold_46 . biological_region 157439 157442 0.999 + . logic_name=eponine scaffold_46 . biological_region 158553 158555 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 158172 158732 . + . ID=Physo117827;biotype=protein_coding;external_name=estExt_Genewise1.C_460086;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 158172 158732 . + . ID=Physo117827;Parent=Physo117827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 158172 158358 . + 0 ID=Physo117827;Parent=Physo117827;rank=1 scaffold_46 . exon 158172 158358 . + . ID=Physo117827.1;Parent=Physo117827;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 158475 158497 . + 0 ID=Physo117827;Parent=Physo117827;rank=2 scaffold_46 . exon 158475 158732 . + . ID=Physo117827.2;Parent=Physo117827;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_46 ensembl protein_coding_gene 152318 153638 . + . ID=Physo136491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460037;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 152318 153638 . + . ID=Physo136491;Parent=Physo136491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 152318 152516 . + 0 ID=Physo136491;Parent=Physo136491;rank=1 scaffold_46 . exon 152318 152516 . + . ID=Physo136491.1;Parent=Physo136491;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 152563 152632 . + 0 ID=Physo136491;Parent=Physo136491;rank=2 scaffold_46 . exon 152563 152632 . + . ID=Physo136491.2;Parent=Physo136491;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_46 . CDS 152704 152892 . + 0 ID=Physo136491;Parent=Physo136491;rank=3 scaffold_46 . exon 152704 152892 . + . ID=Physo136491.3;Parent=Physo136491;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_46 . CDS 152975 153329 . + 0 ID=Physo136491;Parent=Physo136491;rank=4 scaffold_46 . exon 152975 153329 . + . ID=Physo136491.4;Parent=Physo136491;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . CDS 153456 153638 . + 0 ID=Physo136491;Parent=Physo136491;rank=5 scaffold_46 . exon 153456 153638 . + . ID=Physo136491.5;Parent=Physo136491;constitutive=1;rank=5 scaffold_46 ensembl protein_coding_gene 156376 157686 . - . ID=Physo136492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460038;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 156376 157686 . - . ID=Physo136492;Parent=Physo136492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 156376 157686 . - 0 ID=Physo136492;Parent=Physo136492;rank=1 scaffold_46 . exon 156376 157686 . - . ID=Physo136492.1;Parent=Physo136492;constitutive=1;rank=1 scaffold_46 . repeat_region 159870 159911 . ? . description=trf scaffold_46 . repeat_region 160516 160564 . ? . description=dust scaffold_46 . repeat_region 161169 161200 . ? . description=trf scaffold_46 . repeat_region 161170 161224 . ? . description=dust scaffold_46 . repeat_region 161173 161200 . ? . description=trf scaffold_46 . repeat_region 163252 163295 . ? . description=trf scaffold_46 . repeat_region 163252 163296 . ? . description=trf scaffold_46 ensembl protein_coding_gene 159098 160753 . - . ID=Physo136493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460039;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 159098 160753 . - . ID=Physo136493;Parent=Physo136493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 159098 159538 . - . ID=Physo136493.5;Parent=Physo136493;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_46 . CDS 159271 159538 . - 0 ID=Physo136493;Parent=Physo136493;rank=5 scaffold_46 . CDS 159614 159752 . - 0 ID=Physo136493;Parent=Physo136493;rank=4 scaffold_46 . exon 159614 159752 . - . ID=Physo136493.4;Parent=Physo136493;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_46 . CDS 159822 159931 . - 0 ID=Physo136493;Parent=Physo136493;rank=3 scaffold_46 . exon 159822 159931 . - . ID=Physo136493.3;Parent=Physo136493;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 159993 160063 . - 0 ID=Physo136493;Parent=Physo136493;rank=2 scaffold_46 . exon 159993 160063 . - . ID=Physo136493.2;Parent=Physo136493;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . CDS 160614 160745 . - 0 ID=Physo136493;Parent=Physo136493;rank=1 scaffold_46 . exon 160614 160753 . - . ID=Physo136493.1;Parent=Physo136493;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 160985 163848 . + . ID=Physo136494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460040;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 160985 163848 . + . ID=Physo136494;Parent=Physo136494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 160985 163744 . + 0 ID=Physo136494;Parent=Physo136494;rank=1 scaffold_46 . exon 160985 163848 . + . ID=Physo136494.1;Parent=Physo136494;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 163981 164449 . + . ID=Physo136495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460041;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 163981 164449 . + . ID=Physo136495;Parent=Physo136495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 163981 164051 . + 0 ID=Physo136495;Parent=Physo136495;rank=1 scaffold_46 . exon 163981 164051 . + . ID=Physo136495.1;Parent=Physo136495;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 164140 164449 . + 0 ID=Physo136495;Parent=Physo136495;rank=2 scaffold_46 . exon 164140 164449 . + . ID=Physo136495.2;Parent=Physo136495;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 ensembl protein_coding_gene 164473 169298 . - . ID=Physo136496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460042;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 164473 169298 . - . ID=Physo136496;Parent=Physo136496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 164473 169094 . - . ID=Physo136496.2;Parent=Physo136496;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_46 . CDS 164535 169094 . - 0 ID=Physo136496;Parent=Physo136496;rank=2 scaffold_46 . CDS 169173 169298 . - 0 ID=Physo136496;Parent=Physo136496;rank=1 scaffold_46 . biological_region 168805 168806 0.999 - . logic_name=eponine scaffold_46 . biological_region 168855 168858 0.999 - . logic_name=eponine scaffold_46 . biological_region 169057 169060 0.999 - . logic_name=eponine scaffold_46 . biological_region 169187 169189 0.999 + . logic_name=eponine scaffold_46 . biological_region 169594 169597 0.999 + . logic_name=eponine scaffold_46 . biological_region 169621 169621 0.999 + . logic_name=eponine scaffold_46 . biological_region 169929 169933 0.999 - . logic_name=eponine scaffold_46 . biological_region 169987 169994 0.999 + . logic_name=eponine scaffold_46 . biological_region 170038 170044 0.999 + . logic_name=eponine scaffold_46 . biological_region 170043 170046 0.999 - . logic_name=eponine scaffold_46 . biological_region 170077 170077 0.999 - . logic_name=eponine scaffold_46 . biological_region 170726 170732 0.999 + . logic_name=eponine scaffold_46 . biological_region 171249 171254 0.999 + . logic_name=eponine scaffold_46 . biological_region 175075 175080 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 172035 172238 . - . ID=Physo117833;biotype=protein_coding;external_name=estExt_Genewise1.C_460092;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 172035 172238 . - . ID=Physo117833;Parent=Physo117833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 172035 172238 . - 0 ID=Physo117833;Parent=Physo117833;rank=1 scaffold_46 . exon 172035 172238 . - . ID=Physo117833.1;Parent=Physo117833;constitutive=1;rank=1 scaffold_46 . exon 169173 169298 . - . ID=Physo136496.1;Parent=Physo136496;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 169578 170310 . + . ID=Physo136497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460043;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 169578 170310 . + . ID=Physo136497;Parent=Physo136497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 169578 170208 . + . ID=Physo136497.1;Parent=Physo136497;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 169609 170208 . + 0 ID=Physo136497;Parent=Physo136497;rank=1 scaffold_46 . CDS 170289 170309 . + 0 ID=Physo136497;Parent=Physo136497;rank=2 scaffold_46 . exon 170289 170310 . + . ID=Physo136497.2;Parent=Physo136497;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_46 ensembl protein_coding_gene 172605 176310 . + . ID=Physo136499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460045;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 172605 176310 . + . ID=Physo136499;Parent=Physo136499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 172605 174061 . + 0 ID=Physo136499;Parent=Physo136499;rank=1 scaffold_46 . exon 172605 174061 . + . ID=Physo136499.1;Parent=Physo136499;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 174112 174400 . + 0 ID=Physo136499;Parent=Physo136499;rank=2 scaffold_46 . exon 174112 174400 . + . ID=Physo136499.2;Parent=Physo136499;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 174482 174693 . + 0 ID=Physo136499;Parent=Physo136499;rank=3 scaffold_46 . exon 174482 174693 . + . ID=Physo136499.3;Parent=Physo136499;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_46 . CDS 174803 175220 . + 0 ID=Physo136499;Parent=Physo136499;rank=4 scaffold_46 . exon 174803 175220 . + . ID=Physo136499.4;Parent=Physo136499;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . CDS 175294 176310 . + 0 ID=Physo136499;Parent=Physo136499;rank=5 scaffold_46 . exon 175294 176310 . + . ID=Physo136499.5;Parent=Physo136499;constitutive=1;rank=5 scaffold_46 ensembl protein_coding_gene 176375 178150 . - . ID=Physo157424;biotype=protein_coding;external_name=C_scaffold_46000010;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 176375 178150 . - . ID=Physo157424;Parent=Physo157424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 176375 176397 . - 0 ID=Physo157424;Parent=Physo157424;rank=6 scaffold_46 . exon 176375 176397 . - . ID=Physo157424.6;Parent=Physo157424;constitutive=1;ensembl_phase=1;rank=6 scaffold_46 . CDS 176467 176876 . - 0 ID=Physo157424;Parent=Physo157424;rank=5 scaffold_46 . exon 176467 176876 . - . ID=Physo157424.5;Parent=Physo157424;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_46 . CDS 176951 177066 . - 0 ID=Physo157424;Parent=Physo157424;rank=4 scaffold_46 . exon 176951 177066 . - . ID=Physo157424.4;Parent=Physo157424;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_46 . CDS 177131 177267 . - 0 ID=Physo157424;Parent=Physo157424;rank=3 scaffold_46 . exon 177131 177267 . - . ID=Physo157424.3;Parent=Physo157424;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 177723 178022 . - 0 ID=Physo157424;Parent=Physo157424;rank=2 scaffold_46 . exon 177723 178022 . - . ID=Physo157424.2;Parent=Physo157424;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 178096 178150 . - 0 ID=Physo157424;Parent=Physo157424;rank=1 scaffold_46 . exon 178096 178150 . - . ID=Physo157424.1;Parent=Physo157424;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . repeat_region 183710 183718 . ? . description=dust scaffold_46 . repeat_region 184651 184697 . ? . description=dust scaffold_46 . repeat_region 185344 185351 . ? . description=dust scaffold_46 . repeat_region 185388 185398 . ? . description=dust scaffold_46 . repeat_region 187171 187225 . ? . description=trf scaffold_46 ensembl protein_coding_gene 179563 182097 . + . ID=Physo136501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460047;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 179563 182097 . + . ID=Physo136501;Parent=Physo136501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 179563 179927 . + 0 ID=Physo136501;Parent=Physo136501;rank=1 scaffold_46 . exon 179563 179927 . + . ID=Physo136501.1;Parent=Physo136501;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 180027 180119 . + 0 ID=Physo136501;Parent=Physo136501;rank=2 scaffold_46 . exon 180027 180119 . + . ID=Physo136501.2;Parent=Physo136501;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 180270 180274 . + 0 ID=Physo136501;Parent=Physo136501;rank=3 scaffold_46 . exon 180270 180274 . + . ID=Physo136501.3;Parent=Physo136501;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 180343 180414 . + 0 ID=Physo136501;Parent=Physo136501;rank=4 scaffold_46 . exon 180343 180414 . + . ID=Physo136501.4;Parent=Physo136501;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 180494 182097 . + 0 ID=Physo136501;Parent=Physo136501;rank=5 scaffold_46 . exon 180494 182097 . + . ID=Physo136501.5;Parent=Physo136501;constitutive=1;ensembl_phase=1;rank=5 scaffold_46 ensembl protein_coding_gene 186179 186985 . - . ID=Physo136503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460049;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 186179 186985 . - . ID=Physo136503;Parent=Physo136503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 186179 186298 . - . ID=Physo136503.3;Parent=Physo136503;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_46 . CDS 186281 186298 . - 0 ID=Physo136503;Parent=Physo136503;rank=3 scaffold_46 . CDS 186370 186401 . - 0 ID=Physo136503;Parent=Physo136503;rank=2 scaffold_46 . exon 186370 186401 . - . ID=Physo136503.2;Parent=Physo136503;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 186457 186985 . - 0 ID=Physo136503;Parent=Physo136503;rank=1 scaffold_46 . exon 186457 186985 . - . ID=Physo136503.1;Parent=Physo136503;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 183779 185037 . + . ID=Physo157426;biotype=protein_coding;external_name=C_scaffold_46000012;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 183779 185037 . + . ID=Physo157426;Parent=Physo157426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 183779 184049 . + 0 ID=Physo157426;Parent=Physo157426;rank=1 scaffold_46 . exon 183779 184049 . + . ID=Physo157426.1;Parent=Physo157426;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 184157 184317 . + 0 ID=Physo157426;Parent=Physo157426;rank=2 scaffold_46 . exon 184157 184317 . + . ID=Physo157426.2;Parent=Physo157426;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 184405 184474 . + 0 ID=Physo157426;Parent=Physo157426;rank=3 scaffold_46 . exon 184405 184474 . + . ID=Physo157426.3;Parent=Physo157426;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_46 . CDS 184549 184626 . + 0 ID=Physo157426;Parent=Physo157426;rank=4 scaffold_46 . exon 184549 184626 . + . ID=Physo157426.4;Parent=Physo157426;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 184702 184773 . + 0 ID=Physo157426;Parent=Physo157426;rank=5 scaffold_46 . exon 184702 184773 . + . ID=Physo157426.5;Parent=Physo157426;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_46 . CDS 184922 185037 . + 0 ID=Physo157426;Parent=Physo157426;rank=6 scaffold_46 . exon 184922 185037 . + . ID=Physo157426.6;Parent=Physo157426;constitutive=1;ensembl_phase=1;rank=6 scaffold_46 . repeat_region 189611 189792 . + . description=GypsyPi-1c_LTR scaffold_46 . repeat_region 189799 195509 . + . description=GypsyPi-1c_I-int scaffold_46 . biological_region 193440 193444 0.999 - . logic_name=eponine scaffold_46 . biological_region 194125 194127 0.999 + . logic_name=eponine scaffold_46 . biological_region 194173 194178 0.999 + . logic_name=eponine scaffold_46 . biological_region 195947 195952 0.999 - . logic_name=eponine scaffold_46 . repeat_region 196078 196400 . + . description=GypsyPi-1c_I-int scaffold_46 . biological_region 196146 196147 0.999 - . logic_name=eponine scaffold_46 . repeat_region 196522 196695 . + . description=GypsyPi-1c_LTR scaffold_46 . biological_region 197827 197830 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 196974 197252 . + . ID=Physo117834;biotype=protein_coding;external_name=estExt_Genewise1.C_460093;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 196974 197252 . + . ID=Physo117834;Parent=Physo117834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 196974 197252 . + . ID=Physo117834.1;Parent=Physo117834;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 196976 197248 . + 0 ID=Physo117834;Parent=Physo117834;rank=1 scaffold_46 ensembl protein_coding_gene 190161 193734 . + . ID=Physo136504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460050;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 190161 193734 . + . ID=Physo136504;Parent=Physo136504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 190161 193679 . + 0 ID=Physo136504;Parent=Physo136504;rank=1 scaffold_46 . exon 190161 193679 . + . ID=Physo136504.1;Parent=Physo136504;constitutive=1;rank=1 scaffold_46 . CDS 193726 193734 . + 0 ID=Physo136504;Parent=Physo136504;rank=2 scaffold_46 . exon 193726 193734 . + . ID=Physo136504.2;Parent=Physo136504;constitutive=1;rank=2 scaffold_46 ensembl protein_coding_gene 194017 196214 . - . ID=Physo136505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460051;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 194017 196214 . - . ID=Physo136505;Parent=Physo136505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 194017 194670 . - 0 ID=Physo136505;Parent=Physo136505;rank=3 scaffold_46 . exon 194017 194670 . - . ID=Physo136505.3;Parent=Physo136505;constitutive=1;rank=3 scaffold_46 . CDS 194808 195610 . - 0 ID=Physo136505;Parent=Physo136505;rank=2 scaffold_46 . exon 194808 195610 . - . ID=Physo136505.2;Parent=Physo136505;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 195635 196214 . - 0 ID=Physo136505;Parent=Physo136505;rank=1 scaffold_46 . exon 195635 196214 . - . ID=Physo136505.1;Parent=Physo136505;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 197613 200072 . - . ID=Physo136506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460052;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 197613 200072 . - . ID=Physo136506;Parent=Physo136506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 197613 198987 . - 0 ID=Physo136506;Parent=Physo136506;rank=5 scaffold_46 . exon 197613 198987 . - . ID=Physo136506.5;Parent=Physo136506;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 . CDS 199109 199177 . - 0 ID=Physo136506;Parent=Physo136506;rank=4 scaffold_46 . CDS 199252 199326 . - 0 ID=Physo136506;Parent=Physo136506;rank=3 scaffold_46 . CDS 199410 199478 . - 0 ID=Physo136506;Parent=Physo136506;rank=2 scaffold_46 . CDS 199558 200072 . - 0 ID=Physo136506;Parent=Physo136506;rank=1 scaffold_46 . repeat_region 199874 199911 . ? . description=trf scaffold_46 . repeat_region 207409 207451 . ? . description=trf scaffold_46 . repeat_region 208056 208081 . ? . description=trf scaffold_46 . repeat_region 208165 208200 . ? . description=dust scaffold_46 . repeat_region 208165 208200 . ? . description=trf scaffold_46 . exon 199109 199177 . - . ID=Physo136506.4;Parent=Physo136506;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_46 . exon 199252 199326 . - . ID=Physo136506.3;Parent=Physo136506;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_46 . exon 199410 199478 . - . ID=Physo136506.2;Parent=Physo136506;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . exon 199558 200072 . - . ID=Physo136506.1;Parent=Physo136506;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 205430 207807 . - . ID=Physo136508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460054;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 205430 207807 . - . ID=Physo136508;Parent=Physo136508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 205430 206751 . - 0 ID=Physo136508;Parent=Physo136508;rank=5 scaffold_46 . exon 205430 206751 . - . ID=Physo136508.5;Parent=Physo136508;constitutive=1;ensembl_phase=1;rank=5 scaffold_46 . CDS 206823 207320 . - 0 ID=Physo136508;Parent=Physo136508;rank=4 scaffold_46 . exon 206823 207320 . - . ID=Physo136508.4;Parent=Physo136508;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 207405 207523 . - 0 ID=Physo136508;Parent=Physo136508;rank=3 scaffold_46 . exon 207405 207523 . - . ID=Physo136508.3;Parent=Physo136508;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 207609 207692 . - 0 ID=Physo136508;Parent=Physo136508;rank=2 scaffold_46 . exon 207609 207692 . - . ID=Physo136508.2;Parent=Physo136508;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 207770 207807 . - 0 ID=Physo136508;Parent=Physo136508;rank=1 scaffold_46 . exon 207770 207807 . - . ID=Physo136508.1;Parent=Physo136508;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 201409 204700 . - . ID=Physo157428;biotype=protein_coding;external_name=C_scaffold_46000014;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 201409 204700 . - . ID=Physo157428;Parent=Physo157428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 201409 201638 . - 0 ID=Physo157428;Parent=Physo157428;rank=9 scaffold_46 . exon 201409 201638 . - . ID=Physo157428.9;Parent=Physo157428;constitutive=1;ensembl_phase=1;rank=9 scaffold_46 . CDS 201693 202137 . - 0 ID=Physo157428;Parent=Physo157428;rank=8 scaffold_46 . exon 201693 202137 . - . ID=Physo157428.8;Parent=Physo157428;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_46 . CDS 202294 202657 . - 0 ID=Physo157428;Parent=Physo157428;rank=7 scaffold_46 . exon 202294 202657 . - . ID=Physo157428.7;Parent=Physo157428;constitutive=1;ensembl_phase=2;rank=7 scaffold_46 . CDS 202709 203238 . - 0 ID=Physo157428;Parent=Physo157428;rank=6 scaffold_46 . exon 202709 203238 . - . ID=Physo157428.6;Parent=Physo157428;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_46 . CDS 203524 203907 . - 0 ID=Physo157428;Parent=Physo157428;rank=5 scaffold_46 . exon 203524 203907 . - . ID=Physo157428.5;Parent=Physo157428;constitutive=1;rank=5 scaffold_46 . CDS 204208 204342 . - 0 ID=Physo157428;Parent=Physo157428;rank=4 scaffold_46 . exon 204208 204342 . - . ID=Physo157428.4;Parent=Physo157428;constitutive=1;rank=4 scaffold_46 . CDS 204409 204486 . - 0 ID=Physo157428;Parent=Physo157428;rank=3 scaffold_46 . exon 204409 204486 . - . ID=Physo157428.3;Parent=Physo157428;constitutive=1;rank=3 scaffold_46 . CDS 204553 204604 . - 0 ID=Physo157428;Parent=Physo157428;rank=2 scaffold_46 . exon 204553 204604 . - . ID=Physo157428.2;Parent=Physo157428;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 204675 204700 . - 0 ID=Physo157428;Parent=Physo157428;rank=1 scaffold_46 . exon 204675 204700 . - . ID=Physo157428.1;Parent=Physo157428;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . biological_region 208488 208489 0.999 + . logic_name=eponine scaffold_46 . biological_region 208554 208560 0.999 - . logic_name=eponine scaffold_46 . biological_region 217140 217143 0.999 + . logic_name=eponine scaffold_46 . biological_region 217175 217178 0.999 - . logic_name=eponine scaffold_46 . biological_region 217178 217181 0.999 + . logic_name=eponine scaffold_46 . biological_region 217185 217191 0.999 - . logic_name=eponine scaffold_46 . biological_region 217192 217196 0.999 + . logic_name=eponine scaffold_46 . biological_region 217210 217216 0.999 + . logic_name=eponine scaffold_46 . biological_region 217227 217232 0.999 - . logic_name=eponine scaffold_46 . biological_region 217241 217246 0.999 + . logic_name=eponine scaffold_46 . biological_region 217257 217265 0.999 - . logic_name=eponine scaffold_46 . biological_region 217275 217277 0.999 - . logic_name=eponine scaffold_46 ensembl protein_coding_gene 208216 210372 . + . ID=Physo136509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460055;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 208216 210372 . + . ID=Physo136509;Parent=Physo136509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 208216 209120 . + 0 ID=Physo136509;Parent=Physo136509;rank=1 scaffold_46 . exon 208216 209120 . + . ID=Physo136509.1;Parent=Physo136509;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 209193 210372 . + 0 ID=Physo136509;Parent=Physo136509;rank=2 scaffold_46 . exon 209193 210372 . + . ID=Physo136509.2;Parent=Physo136509;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 ensembl protein_coding_gene 216285 220688 . + . ID=Physo136510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460056;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 216285 220688 . + . ID=Physo136510;Parent=Physo136510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 216285 216345 . + 0 ID=Physo136510;Parent=Physo136510;rank=1 scaffold_46 . exon 216285 216345 . + . ID=Physo136510.1;Parent=Physo136510;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 216538 217011 . + 0 ID=Physo136510;Parent=Physo136510;rank=2 scaffold_46 . exon 216538 217011 . + . ID=Physo136510.2;Parent=Physo136510;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 217054 217349 . + 0 ID=Physo136510;Parent=Physo136510;rank=3 scaffold_46 . exon 217054 217349 . + . ID=Physo136510.3;Parent=Physo136510;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 217403 217543 . + 0 ID=Physo136510;Parent=Physo136510;rank=4 scaffold_46 . exon 217403 217543 . + . ID=Physo136510.4;Parent=Physo136510;constitutive=1;rank=4 scaffold_46 . CDS 217618 217803 . + 0 ID=Physo136510;Parent=Physo136510;rank=5 scaffold_46 . exon 217618 217803 . + . ID=Physo136510.5;Parent=Physo136510;constitutive=1;rank=5 scaffold_46 . CDS 217883 218630 . + 0 ID=Physo136510;Parent=Physo136510;rank=6 scaffold_46 . exon 217883 218630 . + . ID=Physo136510.6;Parent=Physo136510;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_46 . CDS 218719 218823 . + 0 ID=Physo136510;Parent=Physo136510;rank=7 scaffold_46 . CDS 218890 220688 . + 0 ID=Physo136510;Parent=Physo136510;rank=8 scaffold_46 . repeat_region 220771 220796 . ? . description=dust scaffold_46 . repeat_region 222541 222590 . ? . description=trf scaffold_46 . exon 218719 218823 . + . ID=Physo136510.7;Parent=Physo136510;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_46 . exon 218890 220688 . + . ID=Physo136510.8;Parent=Physo136510;constitutive=1;ensembl_phase=1;rank=8 scaffold_46 . biological_region 234214 234217 0.999 - . logic_name=eponine scaffold_46 . biological_region 234262 234266 0.999 - . logic_name=eponine scaffold_46 . biological_region 234501 234506 0.999 + . logic_name=eponine scaffold_46 . biological_region 235255 235255 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 232412 237451 . + . ID=Physo136511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460057;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 232412 237451 . + . ID=Physo136511;Parent=Physo136511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 232412 233169 . + 0 ID=Physo136511;Parent=Physo136511;rank=1 scaffold_46 . exon 232412 233169 . + . ID=Physo136511.1;Parent=Physo136511;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 233194 233290 . + 0 ID=Physo136511;Parent=Physo136511;rank=2 scaffold_46 . exon 233194 233290 . + . ID=Physo136511.2;Parent=Physo136511;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 233374 233586 . + 0 ID=Physo136511;Parent=Physo136511;rank=3 scaffold_46 . exon 233374 233586 . + . ID=Physo136511.3;Parent=Physo136511;constitutive=1;rank=3 scaffold_46 . CDS 233823 234586 . + 0 ID=Physo136511;Parent=Physo136511;rank=4 scaffold_46 . exon 233823 234586 . + . ID=Physo136511.4;Parent=Physo136511;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_46 . CDS 234612 234789 . + 0 ID=Physo136511;Parent=Physo136511;rank=5 scaffold_46 . exon 234612 234789 . + . ID=Physo136511.5;Parent=Physo136511;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 . CDS 234941 235691 . + 0 ID=Physo136511;Parent=Physo136511;rank=6 scaffold_46 . exon 234941 235691 . + . ID=Physo136511.6;Parent=Physo136511;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_46 . CDS 235914 237217 . + 0 ID=Physo136511;Parent=Physo136511;rank=7 scaffold_46 . exon 235914 237217 . + . ID=Physo136511.7;Parent=Physo136511;constitutive=1;ensembl_phase=1;rank=7 scaffold_46 . CDS 237287 237451 . + 0 ID=Physo136511;Parent=Physo136511;rank=8 scaffold_46 . exon 237287 237451 . + . ID=Physo136511.8;Parent=Physo136511;constitutive=1;rank=8 scaffold_46 . repeat_region 241150 241189 . ? . description=trf scaffold_46 . repeat_region 244848 244856 . ? . description=dust scaffold_46 . repeat_region 246568 246575 . ? . description=dust scaffold_46 ensembl protein_coding_gene 240040 241473 . - . ID=Physo136512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460058;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 240040 241473 . - . ID=Physo136512;Parent=Physo136512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 240040 240516 . - 0 ID=Physo136512;Parent=Physo136512;rank=4 scaffold_46 . exon 240040 240516 . - . ID=Physo136512.4;Parent=Physo136512;constitutive=1;rank=4 scaffold_46 . CDS 240663 240977 . - 0 ID=Physo136512;Parent=Physo136512;rank=3 scaffold_46 . exon 240663 240977 . - . ID=Physo136512.3;Parent=Physo136512;constitutive=1;rank=3 scaffold_46 . CDS 241077 241193 . - 0 ID=Physo136512;Parent=Physo136512;rank=2 scaffold_46 . exon 241077 241193 . - . ID=Physo136512.2;Parent=Physo136512;constitutive=1;rank=2 scaffold_46 . CDS 241273 241473 . - 0 ID=Physo136512;Parent=Physo136512;rank=1 scaffold_46 . exon 241273 241473 . - . ID=Physo136512.1;Parent=Physo136512;constitutive=1;rank=1 scaffold_46 . biological_region 248485 248490 0.999 + . logic_name=eponine scaffold_46 . biological_region 251509 251509 0.999 + . logic_name=eponine scaffold_46 . repeat_region 254438 254496 . + . description=GypsyPi-1c_I-int scaffold_46 . repeat_region 254532 254628 . + . description=GypsyPi-1c_I-int scaffold_46 . repeat_region 255259 255687 . + . description=GypsyPi-1c_I-int scaffold_46 . repeat_region 255675 256278 . + . description=GypsyPi-1c_I-int scaffold_46 . biological_region 255725 255728 0.999 + . logic_name=eponine scaffold_46 . repeat_region 256733 256864 . + . description=GypsyPi-1c_I-int scaffold_46 ensembl protein_coding_gene 254009 255698 . + . ID=Physo136513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460059;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 254009 255698 . + . ID=Physo136513;Parent=Physo136513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 254009 254432 . + 0 ID=Physo136513;Parent=Physo136513;rank=1 scaffold_46 . exon 254009 254432 . + . ID=Physo136513.1;Parent=Physo136513;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 254569 255698 . + 0 ID=Physo136513;Parent=Physo136513;rank=2 scaffold_46 . exon 254569 255698 . + . ID=Physo136513.2;Parent=Physo136513;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 ensembl protein_coding_gene 256245 258274 . - . ID=Physo136514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460060;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 256245 258274 . - . ID=Physo136514;Parent=Physo136514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 256245 257390 . - 0 ID=Physo136514;Parent=Physo136514;rank=2 scaffold_46 . exon 256245 257390 . - . ID=Physo136514.2;Parent=Physo136514;constitutive=1;rank=2 scaffold_46 . CDS 257426 258274 . - 0 ID=Physo136514;Parent=Physo136514;rank=1 scaffold_46 . exon 257426 258274 . - . ID=Physo136514.1;Parent=Physo136514;constitutive=1;rank=1 scaffold_46 . repeat_region 260721 260729 . ? . description=dust scaffold_46 . repeat_region 262028 262040 . ? . description=dust scaffold_46 ensembl protein_coding_gene 260355 261613 . + . ID=Physo136515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460061;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 260355 261613 . + . ID=Physo136515;Parent=Physo136515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 260355 260357 . + 0 ID=Physo136515;Parent=Physo136515;rank=1 scaffold_46 . exon 260355 260357 . + . ID=Physo136515.1;Parent=Physo136515;constitutive=1;rank=1 scaffold_46 . CDS 260447 260711 . + 0 ID=Physo136515;Parent=Physo136515;rank=2 scaffold_46 . exon 260447 260711 . + . ID=Physo136515.2;Parent=Physo136515;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 260750 261606 . + 0 ID=Physo136515;Parent=Physo136515;rank=3 scaffold_46 . exon 260750 261613 . + . ID=Physo136515.3;Parent=Physo136515;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_46 ensembl protein_coding_gene 262447 263384 . + . ID=Physo136516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460062;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 262447 263384 . + . ID=Physo136516;Parent=Physo136516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 262447 262725 . + 0 ID=Physo136516;Parent=Physo136516;rank=1 scaffold_46 . exon 262447 262725 . + . ID=Physo136516.1;Parent=Physo136516;constitutive=1;rank=1 scaffold_46 . CDS 262995 263384 . + 0 ID=Physo136516;Parent=Physo136516;rank=2 scaffold_46 . exon 262995 263384 . + . ID=Physo136516.2;Parent=Physo136516;constitutive=1;rank=2 scaffold_46 ensembl protein_coding_gene 263981 264928 . - . ID=Physo136517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460063;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 263981 264928 . - . ID=Physo136517;Parent=Physo136517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 263981 264079 . - 0 ID=Physo136517;Parent=Physo136517;rank=4 scaffold_46 . exon 263981 264079 . - . ID=Physo136517.4;Parent=Physo136517;constitutive=1;rank=4 scaffold_46 . CDS 264270 264286 . - 0 ID=Physo136517;Parent=Physo136517;rank=3 scaffold_46 . exon 264270 264286 . - . ID=Physo136517.3;Parent=Physo136517;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 264316 264623 . - 0 ID=Physo136517;Parent=Physo136517;rank=2 scaffold_46 . exon 264316 264623 . - . ID=Physo136517.2;Parent=Physo136517;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 264684 264928 . - 0 ID=Physo136517;Parent=Physo136517;rank=1 scaffold_46 . exon 264684 264928 . - . ID=Physo136517.1;Parent=Physo136517;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . biological_region 272618 272623 0.999 - . logic_name=eponine scaffold_46 . repeat_region 276093 276126 . ? . description=trf scaffold_46 . repeat_region 276097 276148 . ? . description=trf scaffold_46 . repeat_region 276105 276153 . ? . description=trf scaffold_46 . repeat_region 281625 281647 . ? . description=dust scaffold_46 . repeat_region 282453 282460 . ? . description=dust scaffold_46 . repeat_region 285649 285663 . ? . description=dust scaffold_46 . repeat_region 286603 286612 . ? . description=dust scaffold_46 . repeat_region 286683 286693 . ? . description=dust scaffold_46 . repeat_region 291636 291662 . ? . description=trf scaffold_46 . biological_region 291950 291951 0.999 - . logic_name=eponine scaffold_46 . repeat_region 292192 292213 . ? . description=trf scaffold_46 . biological_region 292236 292240 0.999 - . logic_name=eponine scaffold_46 . biological_region 292880 292885 0.999 + . logic_name=eponine scaffold_46 . biological_region 292935 292938 0.999 + . logic_name=eponine scaffold_46 . biological_region 293288 293290 0.999 + . logic_name=eponine scaffold_46 . biological_region 293327 293334 0.999 + . logic_name=eponine scaffold_46 . repeat_region 293566 294215 . - . description=GypsyPi-1c_I-int scaffold_46 . biological_region 294107 294110 0.999 - . logic_name=eponine scaffold_46 . repeat_region 294334 295936 . - . description=GypsyPi-1c_I-int scaffold_46 . biological_region 296037 296040 0.999 + . logic_name=eponine scaffold_46 . biological_region 296364 296366 0.999 - . logic_name=eponine scaffold_46 . biological_region 296438 296444 0.999 - . logic_name=eponine scaffold_46 . biological_region 296493 296497 0.999 + . logic_name=eponine scaffold_46 . repeat_region 296564 297126 . - . description=GypsyPi-1c_I-int scaffold_46 . biological_region 296893 296894 0.999 - . logic_name=eponine scaffold_46 . biological_region 296908 296912 0.999 + . logic_name=eponine scaffold_46 . biological_region 297439 297441 0.999 - . logic_name=eponine scaffold_46 ensembl protein_coding_gene 289569 289967 . + . ID=Physo136518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460064;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 289569 289967 . + . ID=Physo136518;Parent=Physo136518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 289569 289967 . + 0 ID=Physo136518;Parent=Physo136518;rank=1 scaffold_46 . exon 289569 289967 . + . ID=Physo136518.1;Parent=Physo136518;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 291820 293585 . + . ID=Physo136519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460065;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 291820 293585 . + . ID=Physo136519;Parent=Physo136519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 291820 292524 . + 0 ID=Physo136519;Parent=Physo136519;rank=1 scaffold_46 . exon 291820 292524 . + . ID=Physo136519.1;Parent=Physo136519;constitutive=1;rank=1 scaffold_46 . CDS 292602 292749 . + 0 ID=Physo136519;Parent=Physo136519;rank=2 scaffold_46 . exon 292602 292749 . + . ID=Physo136519.2;Parent=Physo136519;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 292888 293585 . + 0 ID=Physo136519;Parent=Physo136519;rank=3 scaffold_46 . exon 292888 293585 . + . ID=Physo136519.3;Parent=Physo136519;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 ensembl protein_coding_gene 293834 297916 . - . ID=Physo136520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460066;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 293834 297916 . - . ID=Physo136520;Parent=Physo136520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 293834 293857 . - 0 ID=Physo136520;Parent=Physo136520;rank=10 scaffold_46 . exon 293834 293857 . - . ID=Physo136520.10;Parent=Physo136520;constitutive=1;rank=10 scaffold_46 . CDS 293904 293917 . - 0 ID=Physo136520;Parent=Physo136520;rank=9 scaffold_46 . exon 293904 293917 . - . ID=Physo136520.9;Parent=Physo136520;constitutive=1;ensembl_phase=1;rank=9 scaffold_46 . CDS 293955 294668 . - 0 ID=Physo136520;Parent=Physo136520;rank=8 scaffold_46 . exon 293955 294668 . - . ID=Physo136520.8;Parent=Physo136520;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_46 . CDS 294718 295564 . - 0 ID=Physo136520;Parent=Physo136520;rank=7 scaffold_46 . exon 294718 295564 . - . ID=Physo136520.7;Parent=Physo136520;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_46 . CDS 295673 295781 . - 0 ID=Physo136520;Parent=Physo136520;rank=6 scaffold_46 . exon 295673 295781 . - . ID=Physo136520.6;Parent=Physo136520;constitutive=1;ensembl_phase=2;rank=6 scaffold_46 . CDS 295955 296593 . - 0 ID=Physo136520;Parent=Physo136520;rank=5 scaffold_46 . exon 295955 296593 . - . ID=Physo136520.5;Parent=Physo136520;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_46 . CDS 296726 297017 . - 0 ID=Physo136520;Parent=Physo136520;rank=4 scaffold_46 . exon 296726 297017 . - . ID=Physo136520.4;Parent=Physo136520;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_46 . CDS 297152 297557 . - 0 ID=Physo136520;Parent=Physo136520;rank=3 scaffold_46 . exon 297152 297557 . - . ID=Physo136520.3;Parent=Physo136520;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_46 . CDS 297618 297718 . - 0 ID=Physo136520;Parent=Physo136520;rank=2 scaffold_46 . CDS 297757 297916 . - 0 ID=Physo136520;Parent=Physo136520;rank=1 scaffold_46 . repeat_region 300533 300540 . ? . description=dust scaffold_46 . exon 297618 297718 . - . ID=Physo136520.2;Parent=Physo136520;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . exon 297757 297916 . - . ID=Physo136520.1;Parent=Physo136520;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 303442 306490 . + . ID=Physo136521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460067;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 303442 306490 . + . ID=Physo136521;Parent=Physo136521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 303442 305144 . + 0 ID=Physo136521;Parent=Physo136521;rank=1 scaffold_46 . exon 303442 305144 . + . ID=Physo136521.1;Parent=Physo136521;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 305268 306443 . + 0 ID=Physo136521;Parent=Physo136521;rank=2 scaffold_46 . exon 305268 306443 . + . ID=Physo136521.2;Parent=Physo136521;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 306484 306490 . + 0 ID=Physo136521;Parent=Physo136521;rank=3 scaffold_46 . exon 306484 306490 . + . ID=Physo136521.3;Parent=Physo136521;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . biological_region 307890 307896 0.999 + . logic_name=eponine scaffold_46 . biological_region 307965 307966 0.999 - . logic_name=eponine scaffold_46 . biological_region 307986 307986 0.999 - . logic_name=eponine scaffold_46 . repeat_region 309633 309686 . ? . description=trf scaffold_46 . repeat_region 311452 311477 . ? . description=trf scaffold_46 . biological_region 312044 312049 0.999 - . logic_name=eponine scaffold_46 . biological_region 312204 312208 0.999 - . logic_name=eponine scaffold_46 . biological_region 312380 312388 0.999 + . logic_name=eponine scaffold_46 . biological_region 312425 312428 0.999 - . logic_name=eponine scaffold_46 . biological_region 312435 312438 0.999 - . logic_name=eponine scaffold_46 . biological_region 313329 313332 0.999 + . logic_name=eponine scaffold_46 . biological_region 313471 313474 0.999 + . logic_name=eponine scaffold_46 . biological_region 313492 313498 0.999 + . logic_name=eponine scaffold_46 . biological_region 313565 313570 0.999 - . logic_name=eponine scaffold_46 . biological_region 313576 313580 0.999 + . logic_name=eponine scaffold_46 . biological_region 313790 313793 0.999 - . logic_name=eponine scaffold_46 . repeat_region 315703 315746 . ? . description=trf scaffold_46 . biological_region 316019 316026 0.999 - . logic_name=eponine scaffold_46 . biological_region 316055 316063 0.999 - . logic_name=eponine scaffold_46 . biological_region 316581 316584 0.999 + . logic_name=eponine scaffold_46 . biological_region 316765 316767 0.999 - . logic_name=eponine scaffold_46 . biological_region 316786 316789 0.999 - . logic_name=eponine scaffold_46 . biological_region 316833 316834 0.999 - . logic_name=eponine scaffold_46 . biological_region 316889 316889 0.999 + . logic_name=eponine scaffold_46 . biological_region 316957 316960 0.999 + . logic_name=eponine scaffold_46 . biological_region 317030 317032 0.999 + . logic_name=eponine scaffold_46 . biological_region 317099 317104 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 311629 312570 . + . ID=Physo136522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460068;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 311629 312570 . + . ID=Physo136522;Parent=Physo136522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 311629 312570 . + 0 ID=Physo136522;Parent=Physo136522;rank=1 scaffold_46 . exon 311629 312570 . + . ID=Physo136522.1;Parent=Physo136522;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 312993 313898 . - . ID=Physo136523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460069;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 312993 313898 . - . ID=Physo136523;Parent=Physo136523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 312993 313898 . - 0 ID=Physo136523;Parent=Physo136523;rank=1 scaffold_46 . exon 312993 313898 . - . ID=Physo136523.1;Parent=Physo136523;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 315226 317873 . + . ID=Physo136524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460070;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 315226 317873 . + . ID=Physo136524;Parent=Physo136524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 315226 315416 . + 0 ID=Physo136524;Parent=Physo136524;rank=1 scaffold_46 . exon 315226 315416 . + . ID=Physo136524.1;Parent=Physo136524;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 315507 315564 . + 0 ID=Physo136524;Parent=Physo136524;rank=2 scaffold_46 . exon 315507 315564 . + . ID=Physo136524.2;Parent=Physo136524;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 315639 315691 . + 0 ID=Physo136524;Parent=Physo136524;rank=3 scaffold_46 . exon 315639 315691 . + . ID=Physo136524.3;Parent=Physo136524;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_46 . CDS 315805 316033 . + 0 ID=Physo136524;Parent=Physo136524;rank=4 scaffold_46 . exon 315805 316033 . + . ID=Physo136524.4;Parent=Physo136524;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . CDS 316271 316287 . + 0 ID=Physo136524;Parent=Physo136524;rank=5 scaffold_46 . exon 316271 316287 . + . ID=Physo136524.5;Parent=Physo136524;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_46 . CDS 316506 317500 . + 0 ID=Physo136524;Parent=Physo136524;rank=6 scaffold_46 . exon 316506 317500 . + . ID=Physo136524.6;Parent=Physo136524;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_46 . CDS 317578 317696 . + 0 ID=Physo136524;Parent=Physo136524;rank=7 scaffold_46 . CDS 317772 317873 . + 0 ID=Physo136524;Parent=Physo136524;rank=8 scaffold_46 . repeat_region 324955 325010 . ? . description=dust scaffold_46 . exon 317578 317696 . + . ID=Physo136524.7;Parent=Physo136524;constitutive=1;ensembl_phase=1;rank=7 scaffold_46 . exon 317772 317873 . + . ID=Physo136524.8;Parent=Physo136524;constitutive=1;rank=8 scaffold_46 ensembl protein_coding_gene 318025 320409 . - . ID=Physo136525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460071;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 318025 320409 . - . ID=Physo136525;Parent=Physo136525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 318025 320409 . - 0 ID=Physo136525;Parent=Physo136525;rank=1 scaffold_46 . exon 318025 320409 . - . ID=Physo136525.1;Parent=Physo136525;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 322572 325239 . - . ID=Physo136526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460072;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 322572 325239 . - . ID=Physo136526;Parent=Physo136526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 322572 322579 . - 0 ID=Physo136526;Parent=Physo136526;rank=2 scaffold_46 . exon 322572 322579 . - . ID=Physo136526.2;Parent=Physo136526;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 322668 325239 . - 0 ID=Physo136526;Parent=Physo136526;rank=1 scaffold_46 . exon 322668 325239 . - . ID=Physo136526.1;Parent=Physo136526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 325369 326439 . + . ID=Physo136527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460073;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 325369 326439 . + . ID=Physo136527;Parent=Physo136527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 325369 325510 . + 0 ID=Physo136527;Parent=Physo136527;rank=1 scaffold_46 . exon 325369 325510 . + . ID=Physo136527.1;Parent=Physo136527;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 325581 325648 . + 0 ID=Physo136527;Parent=Physo136527;rank=2 scaffold_46 . exon 325581 325648 . + . ID=Physo136527.2;Parent=Physo136527;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 325732 325857 . + 0 ID=Physo136527;Parent=Physo136527;rank=3 scaffold_46 . exon 325732 325857 . + . ID=Physo136527.3;Parent=Physo136527;constitutive=1;rank=3 scaffold_46 . CDS 325964 326010 . + 0 ID=Physo136527;Parent=Physo136527;rank=4 scaffold_46 . exon 325964 326010 . + . ID=Physo136527.4;Parent=Physo136527;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_46 . CDS 326124 326439 . + 0 ID=Physo136527;Parent=Physo136527;rank=5 scaffold_46 . exon 326124 326439 . + . ID=Physo136527.5;Parent=Physo136527;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 ensembl protein_coding_gene 326696 328084 . + . ID=Physo136528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460074;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 326696 328084 . + . ID=Physo136528;Parent=Physo136528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 326696 326772 . + . ID=Physo136528.1;Parent=Physo136528;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_46 . CDS 326711 326772 . + 0 ID=Physo136528;Parent=Physo136528;rank=1 scaffold_46 . CDS 326888 326965 . + 0 ID=Physo136528;Parent=Physo136528;rank=2 scaffold_46 . exon 326888 326965 . + . ID=Physo136528.2;Parent=Physo136528;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 327049 327207 . + 0 ID=Physo136528;Parent=Physo136528;rank=3 scaffold_46 . exon 327049 327207 . + . ID=Physo136528.3;Parent=Physo136528;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_46 . CDS 327297 327711 . + 0 ID=Physo136528;Parent=Physo136528;rank=4 scaffold_46 . biological_region 327316 327323 0.999 + . logic_name=eponine scaffold_46 . biological_region 327359 327364 0.999 + . logic_name=eponine scaffold_46 . biological_region 327392 327401 0.999 + . logic_name=eponine scaffold_46 . biological_region 327401 327405 0.999 - . logic_name=eponine scaffold_46 . biological_region 327421 327429 0.999 - . logic_name=eponine scaffold_46 . biological_region 327456 327462 0.999 + . logic_name=eponine scaffold_46 . biological_region 327478 327481 0.999 + . logic_name=eponine scaffold_46 . biological_region 327504 327509 0.999 + . logic_name=eponine scaffold_46 . biological_region 327507 327513 0.999 - . logic_name=eponine scaffold_46 . biological_region 327534 327540 0.999 - . logic_name=eponine scaffold_46 . biological_region 327555 327557 0.999 - . logic_name=eponine scaffold_46 . biological_region 327564 327567 0.999 - . logic_name=eponine scaffold_46 . biological_region 327582 327583 0.999 - . logic_name=eponine scaffold_46 . biological_region 327592 327592 0.999 - . logic_name=eponine scaffold_46 . biological_region 327636 327645 0.999 - . logic_name=eponine scaffold_46 . biological_region 327659 327663 0.999 - . logic_name=eponine scaffold_46 . biological_region 327680 327684 0.999 - . logic_name=eponine scaffold_46 . biological_region 327721 327726 0.999 - . logic_name=eponine scaffold_46 . biological_region 333424 333427 0.999 - . logic_name=eponine scaffold_46 . biological_region 333425 333431 0.999 + . logic_name=eponine scaffold_46 . biological_region 333456 333460 0.999 + . logic_name=eponine scaffold_46 . biological_region 333479 333485 0.999 + . logic_name=eponine scaffold_46 . repeat_region 336500 336539 . ? . description=trf scaffold_46 . exon 327297 328084 . + . ID=Physo136528.4;Parent=Physo136528;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_46 ensembl protein_coding_gene 328447 330037 . + . ID=Physo136529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460075;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 328447 330037 . + . ID=Physo136529;Parent=Physo136529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 328447 328572 . + . ID=Physo136529.1;Parent=Physo136529;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 328452 328572 . + 0 ID=Physo136529;Parent=Physo136529;rank=1 scaffold_46 . CDS 328661 328757 . + 0 ID=Physo136529;Parent=Physo136529;rank=2 scaffold_46 . exon 328661 328757 . + . ID=Physo136529.2;Parent=Physo136529;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_46 . CDS 328835 329152 . + 0 ID=Physo136529;Parent=Physo136529;rank=3 scaffold_46 . exon 328835 329152 . + . ID=Physo136529.3;Parent=Physo136529;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_46 . CDS 329227 330037 . + 0 ID=Physo136529;Parent=Physo136529;rank=4 scaffold_46 . exon 329227 330037 . + . ID=Physo136529.4;Parent=Physo136529;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 ensembl protein_coding_gene 332532 333189 . - . ID=Physo136530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460076;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 332532 333189 . - . ID=Physo136530;Parent=Physo136530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 332532 332748 . - 0 ID=Physo136530;Parent=Physo136530;rank=3 scaffold_46 . exon 332532 332748 . - . ID=Physo136530.3;Parent=Physo136530;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 332819 332908 . - 0 ID=Physo136530;Parent=Physo136530;rank=2 scaffold_46 . exon 332819 332908 . - . ID=Physo136530.2;Parent=Physo136530;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 333025 333185 . - 0 ID=Physo136530;Parent=Physo136530;rank=1 scaffold_46 . exon 333025 333189 . - . ID=Physo136530.1;Parent=Physo136530;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 333346 334345 . + . ID=Physo136531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460077;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 333346 334345 . + . ID=Physo136531;Parent=Physo136531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 333346 333941 . + . ID=Physo136531.1;Parent=Physo136531;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 333347 333941 . + 0 ID=Physo136531;Parent=Physo136531;rank=1 scaffold_46 . CDS 334017 334067 . + 0 ID=Physo136531;Parent=Physo136531;rank=2 scaffold_46 . exon 334017 334067 . + . ID=Physo136531.2;Parent=Physo136531;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 334148 334176 . + 0 ID=Physo136531;Parent=Physo136531;rank=3 scaffold_46 . exon 334148 334345 . + . ID=Physo136531.3;Parent=Physo136531;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_46 ensembl protein_coding_gene 336970 338747 . + . ID=Physo136532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460078;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 336970 338747 . + . ID=Physo136532;Parent=Physo136532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 336970 337322 . + 0 ID=Physo136532;Parent=Physo136532;rank=1 scaffold_46 . exon 336970 337322 . + . ID=Physo136532.1;Parent=Physo136532;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 337396 337779 . + 0 ID=Physo136532;Parent=Physo136532;rank=2 scaffold_46 . CDS 337979 338271 . + 0 ID=Physo136532;Parent=Physo136532;rank=3 scaffold_46 . CDS 338341 338747 . + 0 ID=Physo136532;Parent=Physo136532;rank=4 scaffold_46 . exon 337396 337779 . + . ID=Physo136532.2;Parent=Physo136532;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . exon 337979 338271 . + . ID=Physo136532.3;Parent=Physo136532;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_46 . exon 338341 338747 . + . ID=Physo136532.4;Parent=Physo136532;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 ensembl protein_coding_gene 339433 340443 . - . ID=Physo136533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460079;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 339433 340443 . - . ID=Physo136533;Parent=Physo136533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 339433 340443 . - 0 ID=Physo136533;Parent=Physo136533;rank=1 scaffold_46 . exon 339433 340443 . - . ID=Physo136533.1;Parent=Physo136533;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 342062 345376 . + . ID=Physo136535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460081;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 342062 345376 . + . ID=Physo136535;Parent=Physo136535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 342062 345340 . + 0 ID=Physo136535;Parent=Physo136535;rank=1 scaffold_46 . exon 342062 345376 . + . ID=Physo136535.1;Parent=Physo136535;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 340853 341697 . - . ID=Physo157434;biotype=protein_coding;external_name=C_scaffold_46000020;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 340853 341697 . - . ID=Physo157434;Parent=Physo157434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 340853 341189 . - 0 ID=Physo157434;Parent=Physo157434;rank=3 scaffold_46 . exon 340853 341189 . - . ID=Physo157434.3;Parent=Physo157434;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 341254 341415 . - 0 ID=Physo157434;Parent=Physo157434;rank=2 scaffold_46 . exon 341254 341415 . - . ID=Physo157434.2;Parent=Physo157434;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 341495 341697 . - 0 ID=Physo157434;Parent=Physo157434;rank=1 scaffold_46 . exon 341495 341697 . - . ID=Physo157434.1;Parent=Physo157434;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . biological_region 347455 347459 0.999 - . logic_name=eponine scaffold_46 . repeat_region 348571 348578 . ? . description=dust scaffold_46 . repeat_region 351115 351123 . ? . description=dust scaffold_46 . biological_region 354688 354690 0.999 + . logic_name=eponine scaffold_46 . biological_region 354948 354952 0.999 + . logic_name=eponine scaffold_46 . biological_region 355362 355363 0.999 - . logic_name=eponine scaffold_46 . repeat_region 355590 355621 . ? . description=dust scaffold_46 . repeat_region 355590 355621 . ? . description=trf scaffold_46 . repeat_region 355641 355649 . ? . description=dust scaffold_46 . repeat_region 356133 356140 . ? . description=dust scaffold_46 . repeat_region 356135 356193 . ? . description=trf scaffold_46 ensembl protein_coding_gene 354849 355586 . - . ID=Physo108957;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_460004;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 354849 355586 . - . ID=Physo108957;Parent=Physo108957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 354849 355586 . - 0 ID=Physo108957;Parent=Physo108957;rank=1 scaffold_46 . exon 354849 355586 . - . ID=Physo108957.1;Parent=Physo108957;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 347976 348813 . - . ID=Physo117755;biotype=protein_coding;external_name=estExt_Genewise1.C_460014;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 347976 348813 . - . ID=Physo117755;Parent=Physo117755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 347976 348048 . - 0 ID=Physo117755;Parent=Physo117755;rank=5 scaffold_46 . exon 347976 348048 . - . ID=Physo117755.5;Parent=Physo117755;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 . CDS 348127 348263 . - 0 ID=Physo117755;Parent=Physo117755;rank=4 scaffold_46 . exon 348127 348263 . - . ID=Physo117755.4;Parent=Physo117755;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_46 . CDS 348339 348521 . - 0 ID=Physo117755;Parent=Physo117755;rank=3 scaffold_46 . exon 348339 348521 . - . ID=Physo117755.3;Parent=Physo117755;constitutive=1;rank=3 scaffold_46 . CDS 348590 348634 . - 0 ID=Physo117755;Parent=Physo117755;rank=2 scaffold_46 . exon 348590 348634 . - . ID=Physo117755.2;Parent=Physo117755;constitutive=1;rank=2 scaffold_46 . CDS 348736 348786 . - 0 ID=Physo117755;Parent=Physo117755;rank=1 scaffold_46 . exon 348736 348813 . - . ID=Physo117755.1;Parent=Physo117755;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 349183 354580 . + . ID=Physo157435;biotype=protein_coding;external_name=C_scaffold_46000021;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 349183 354580 . + . ID=Physo157435;Parent=Physo157435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 349183 349217 . + 0 ID=Physo157435;Parent=Physo157435;rank=1 scaffold_46 . exon 349183 349217 . + . ID=Physo157435.1;Parent=Physo157435;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 349365 349664 . + 0 ID=Physo157435;Parent=Physo157435;rank=2 scaffold_46 . exon 349365 349664 . + . ID=Physo157435.2;Parent=Physo157435;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 349809 349998 . + 0 ID=Physo157435;Parent=Physo157435;rank=3 scaffold_46 . exon 349809 349998 . + . ID=Physo157435.3;Parent=Physo157435;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 350079 350237 . + 0 ID=Physo157435;Parent=Physo157435;rank=4 scaffold_46 . exon 350079 350237 . + . ID=Physo157435.4;Parent=Physo157435;constitutive=1;rank=4 scaffold_46 . CDS 350320 350367 . + 0 ID=Physo157435;Parent=Physo157435;rank=5 scaffold_46 . exon 350320 350367 . + . ID=Physo157435.5;Parent=Physo157435;constitutive=1;rank=5 scaffold_46 . CDS 350446 350503 . + 0 ID=Physo157435;Parent=Physo157435;rank=6 scaffold_46 . exon 350446 350503 . + . ID=Physo157435.6;Parent=Physo157435;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_46 . CDS 350576 350638 . + 0 ID=Physo157435;Parent=Physo157435;rank=7 scaffold_46 . exon 350576 350638 . + . ID=Physo157435.7;Parent=Physo157435;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_46 . CDS 350729 350802 . + 0 ID=Physo157435;Parent=Physo157435;rank=8 scaffold_46 . exon 350729 350802 . + . ID=Physo157435.8;Parent=Physo157435;constitutive=1;ensembl_phase=1;rank=8 scaffold_46 . CDS 351008 351055 . + 0 ID=Physo157435;Parent=Physo157435;rank=9 scaffold_46 . exon 351008 351055 . + . ID=Physo157435.9;Parent=Physo157435;constitutive=1;rank=9 scaffold_46 . CDS 351251 351640 . + 0 ID=Physo157435;Parent=Physo157435;rank=10 scaffold_46 . exon 351251 351640 . + . ID=Physo157435.10;Parent=Physo157435;constitutive=1;rank=10 scaffold_46 . CDS 351707 351809 . + 0 ID=Physo157435;Parent=Physo157435;rank=11 scaffold_46 . exon 351707 351809 . + . ID=Physo157435.11;Parent=Physo157435;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_46 . CDS 352095 352235 . + 0 ID=Physo157435;Parent=Physo157435;rank=12 scaffold_46 . exon 352095 352235 . + . ID=Physo157435.12;Parent=Physo157435;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_46 . CDS 352359 353047 . + 0 ID=Physo157435;Parent=Physo157435;rank=13 scaffold_46 . exon 352359 353047 . + . ID=Physo157435.13;Parent=Physo157435;constitutive=1;ensembl_phase=1;rank=13 scaffold_46 . CDS 353108 353517 . + 0 ID=Physo157435;Parent=Physo157435;rank=14 scaffold_46 . exon 353108 353517 . + . ID=Physo157435.14;Parent=Physo157435;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_46 . CDS 353560 353671 . + 0 ID=Physo157435;Parent=Physo157435;rank=15 scaffold_46 . exon 353560 353671 . + . ID=Physo157435.15;Parent=Physo157435;constitutive=1;ensembl_phase=2;rank=15 scaffold_46 . CDS 353813 354580 . + 0 ID=Physo157435;Parent=Physo157435;rank=16 scaffold_46 . exon 353813 354580 . + . ID=Physo157435.16;Parent=Physo157435;constitutive=1;rank=16 scaffold_46 ensembl protein_coding_gene 357446 359570 . + . ID=Physo136539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460085;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 357446 359570 . + . ID=Physo136539;Parent=Physo136539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 357446 359570 . + . ID=Physo136539.1;Parent=Physo136539;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 357480 359570 . + 0 ID=Physo136539;Parent=Physo136539;rank=1 scaffold_46 ensembl protein_coding_gene 359703 363231 . - . ID=Physo136540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460086;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 359703 363231 . - . ID=Physo136540;Parent=Physo136540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 359703 363231 . - . ID=Physo136540.1;Parent=Physo136540;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_46 . CDS 359755 363231 . - 0 ID=Physo136540;Parent=Physo136540;rank=1 scaffold_46 ensembl protein_coding_gene 363598 364232 . + . ID=Physo136541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460087;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 363598 364232 . + . ID=Physo136541;Parent=Physo136541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 363598 363728 . + 0 ID=Physo136541;Parent=Physo136541;rank=1 scaffold_46 . exon 363598 363728 . + . ID=Physo136541.1;Parent=Physo136541;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 363782 364232 . + 0 ID=Physo136541;Parent=Physo136541;rank=2 scaffold_46 . exon 363782 364232 . + . ID=Physo136541.2;Parent=Physo136541;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . repeat_region 366687 366857 . ? . description=trf scaffold_46 . repeat_region 366777 366857 . ? . description=trf scaffold_46 . repeat_region 367469 367563 . ? . description=trf scaffold_46 . biological_region 370007 370010 0.999 + . logic_name=eponine scaffold_46 . biological_region 370789 370792 0.999 - . logic_name=eponine scaffold_46 . biological_region 370912 370913 0.999 + . logic_name=eponine scaffold_46 . biological_region 370958 370961 0.999 - . logic_name=eponine scaffold_46 . biological_region 370961 370966 0.999 + . logic_name=eponine scaffold_46 . biological_region 371000 371003 0.999 - . logic_name=eponine scaffold_46 . biological_region 371029 371032 0.999 - . logic_name=eponine scaffold_46 . biological_region 372007 372012 0.999 + . logic_name=eponine scaffold_46 . biological_region 372014 372015 0.999 - . logic_name=eponine scaffold_46 . biological_region 372076 372077 0.999 - . logic_name=eponine scaffold_46 . biological_region 372229 372229 0.999 + . logic_name=eponine scaffold_46 . biological_region 372282 372285 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 371707 372679 . + . ID=Physo136542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460088;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 371707 372679 . + . ID=Physo136542;Parent=Physo136542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 371707 372528 . + 0 ID=Physo136542;Parent=Physo136542;rank=1 scaffold_46 . exon 371707 372679 . + . ID=Physo136542.1;Parent=Physo136542;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 372828 373359 . + . ID=Physo136543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460089;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 372828 373359 . + . ID=Physo136543;Parent=Physo136543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 372828 372875 . + 0 ID=Physo136543;Parent=Physo136543;rank=1 scaffold_46 . exon 372828 372875 . + . ID=Physo136543.1;Parent=Physo136543;constitutive=1;rank=1 scaffold_46 . CDS 372952 373045 . + 0 ID=Physo136543;Parent=Physo136543;rank=2 scaffold_46 . exon 372952 373045 . + . ID=Physo136543.2;Parent=Physo136543;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 373114 373312 . + 0 ID=Physo136543;Parent=Physo136543;rank=3 scaffold_46 . exon 373114 373312 . + . ID=Physo136543.3;Parent=Physo136543;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_46 . CDS 373347 373359 . + 0 ID=Physo136543;Parent=Physo136543;rank=4 scaffold_46 . exon 373347 373359 . + . ID=Physo136543.4;Parent=Physo136543;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 ensembl protein_coding_gene 375729 377994 . - . ID=Physo136544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460090;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 375729 377994 . - . ID=Physo136544;Parent=Physo136544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 375729 377667 . - 0 ID=Physo136544;Parent=Physo136544;rank=2 scaffold_46 . exon 375729 377667 . - . ID=Physo136544.2;Parent=Physo136544;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 377768 377994 . - 0 ID=Physo136544;Parent=Physo136544;rank=1 scaffold_46 . repeat_region 379223 379230 . ? . description=dust scaffold_46 . repeat_region 380352 380368 . ? . description=dust scaffold_46 . exon 377768 377994 . - . ID=Physo136544.1;Parent=Physo136544;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 378622 382093 . + . ID=Physo157437;biotype=protein_coding;external_name=C_scaffold_46000023;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 378622 382093 . + . ID=Physo157437;Parent=Physo157437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 378622 379010 . + 0 ID=Physo157437;Parent=Physo157437;rank=1 scaffold_46 . exon 378622 379010 . + . ID=Physo157437.1;Parent=Physo157437;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 379088 379160 . + 0 ID=Physo157437;Parent=Physo157437;rank=2 scaffold_46 . exon 379088 379160 . + . ID=Physo157437.2;Parent=Physo157437;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 379235 379357 . + 0 ID=Physo157437;Parent=Physo157437;rank=3 scaffold_46 . exon 379235 379357 . + . ID=Physo157437.3;Parent=Physo157437;constitutive=1;rank=3 scaffold_46 . CDS 379436 379571 . + 0 ID=Physo157437;Parent=Physo157437;rank=4 scaffold_46 . exon 379436 379571 . + . ID=Physo157437.4;Parent=Physo157437;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_46 . CDS 379646 379914 . + 0 ID=Physo157437;Parent=Physo157437;rank=5 scaffold_46 . exon 379646 379914 . + . ID=Physo157437.5;Parent=Physo157437;constitutive=1;ensembl_phase=1;rank=5 scaffold_46 . CDS 380004 380122 . + 0 ID=Physo157437;Parent=Physo157437;rank=6 scaffold_46 . exon 380004 380122 . + . ID=Physo157437.6;Parent=Physo157437;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_46 . CDS 380691 380883 . + 0 ID=Physo157437;Parent=Physo157437;rank=7 scaffold_46 . exon 380691 380883 . + . ID=Physo157437.7;Parent=Physo157437;constitutive=1;ensembl_phase=2;rank=7 scaffold_46 . CDS 380966 382093 . + 0 ID=Physo157437;Parent=Physo157437;rank=8 scaffold_46 . exon 380966 382093 . + . ID=Physo157437.8;Parent=Physo157437;constitutive=1;rank=8 scaffold_46 ensembl protein_coding_gene 382186 383427 . - . ID=Physo157438;biotype=protein_coding;external_name=C_scaffold_46000024;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 382186 383427 . - . ID=Physo157438;Parent=Physo157438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 382186 383427 . - 0 ID=Physo157438;Parent=Physo157438;rank=1 scaffold_46 . exon 382186 383427 . - . ID=Physo157438.1;Parent=Physo157438;constitutive=1;rank=1 scaffold_46 . biological_region 389604 389605 0.999 - . logic_name=eponine scaffold_46 . biological_region 389664 389668 0.999 - . logic_name=eponine scaffold_46 . biological_region 394152 394155 0.999 - . logic_name=eponine scaffold_46 . biological_region 394489 394490 0.999 + . logic_name=eponine scaffold_46 . biological_region 394565 394572 0.999 - . logic_name=eponine scaffold_46 . biological_region 394865 394866 0.999 + . logic_name=eponine scaffold_46 . biological_region 395150 395151 0.999 - . logic_name=eponine scaffold_46 . repeat_region 395835 395881 . ? . description=trf scaffold_46 ensembl protein_coding_gene 386981 389734 . - . ID=Physo136548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460094;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 386981 389734 . - . ID=Physo136548;Parent=Physo136548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 386981 389734 . - 0 ID=Physo136548;Parent=Physo136548;rank=1 scaffold_46 . exon 386981 389734 . - . ID=Physo136548.1;Parent=Physo136548;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 390389 391006 . + . ID=Physo136549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460095;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 390389 391006 . + . ID=Physo136549;Parent=Physo136549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 390389 391006 . + 0 ID=Physo136549;Parent=Physo136549;rank=1 scaffold_46 . exon 390389 391006 . + . ID=Physo136549.1;Parent=Physo136549;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 391217 392237 . + . ID=Physo136550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460096;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 391217 392237 . + . ID=Physo136550;Parent=Physo136550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 391217 391491 . + . ID=Physo136550.1;Parent=Physo136550;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_46 . CDS 391220 391491 . + 0 ID=Physo136550;Parent=Physo136550;rank=1 scaffold_46 . CDS 391570 391628 . + 0 ID=Physo136550;Parent=Physo136550;rank=2 scaffold_46 . exon 391570 391628 . + . ID=Physo136550.2;Parent=Physo136550;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 391706 391761 . + 0 ID=Physo136550;Parent=Physo136550;rank=3 scaffold_46 . exon 391706 391761 . + . ID=Physo136550.3;Parent=Physo136550;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 391847 391901 . + 0 ID=Physo136550;Parent=Physo136550;rank=4 scaffold_46 . exon 391847 391901 . + . ID=Physo136550.4;Parent=Physo136550;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_46 . CDS 391993 392237 . + 0 ID=Physo136550;Parent=Physo136550;rank=5 scaffold_46 . exon 391993 392237 . + . ID=Physo136550.5;Parent=Physo136550;constitutive=1;ensembl_phase=1;rank=5 scaffold_46 ensembl protein_coding_gene 392388 397980 . - . ID=Physo157439;biotype=protein_coding;external_name=C_scaffold_46000025;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 392388 397980 . - . ID=Physo157439;Parent=Physo157439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 392388 393010 . - 0 ID=Physo157439;Parent=Physo157439;rank=13 scaffold_46 . exon 392388 393010 . - . ID=Physo157439.13;Parent=Physo157439;constitutive=1;ensembl_phase=1;rank=13 scaffold_46 . CDS 393667 393820 . - 0 ID=Physo157439;Parent=Physo157439;rank=12 scaffold_46 . exon 393667 393820 . - . ID=Physo157439.12;Parent=Physo157439;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_46 . CDS 393910 394564 . - 0 ID=Physo157439;Parent=Physo157439;rank=11 scaffold_46 . exon 393910 394564 . - . ID=Physo157439.11;Parent=Physo157439;constitutive=1;ensembl_phase=2;rank=11 scaffold_46 . CDS 394905 395239 . - 0 ID=Physo157439;Parent=Physo157439;rank=10 scaffold_46 . exon 394905 395239 . - . ID=Physo157439.10;Parent=Physo157439;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_46 . CDS 395279 395395 . - 0 ID=Physo157439;Parent=Physo157439;rank=9 scaffold_46 . exon 395279 395395 . - . ID=Physo157439.9;Parent=Physo157439;constitutive=1;rank=9 scaffold_46 . CDS 395473 395884 . - 0 ID=Physo157439;Parent=Physo157439;rank=8 scaffold_46 . exon 395473 395884 . - . ID=Physo157439.8;Parent=Physo157439;constitutive=1;ensembl_phase=2;rank=8 scaffold_46 . CDS 395975 396042 . - 0 ID=Physo157439;Parent=Physo157439;rank=7 scaffold_46 . exon 395975 396042 . - . ID=Physo157439.7;Parent=Physo157439;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_46 . CDS 396114 396254 . - 0 ID=Physo157439;Parent=Physo157439;rank=6 scaffold_46 . exon 396114 396254 . - . ID=Physo157439.6;Parent=Physo157439;constitutive=1;rank=6 scaffold_46 . CDS 396332 396484 . - 0 ID=Physo157439;Parent=Physo157439;rank=5 scaffold_46 . exon 396332 396484 . - . ID=Physo157439.5;Parent=Physo157439;constitutive=1;rank=5 scaffold_46 . CDS 396575 396688 . - 0 ID=Physo157439;Parent=Physo157439;rank=4 scaffold_46 . exon 396575 396688 . - . ID=Physo157439.4;Parent=Physo157439;constitutive=1;rank=4 scaffold_46 . CDS 396770 396961 . - 0 ID=Physo157439;Parent=Physo157439;rank=3 scaffold_46 . CDS 397230 397330 . - 0 ID=Physo157439;Parent=Physo157439;rank=2 scaffold_46 . CDS 397410 397980 . - 0 ID=Physo157439;Parent=Physo157439;rank=1 scaffold_46 . repeat_region 397208 397215 . ? . description=dust scaffold_46 . repeat_region 404116 404144 . ? . description=dust scaffold_46 ensembl protein_coding_gene 400424 402031 . - . ID=Physo136555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460101;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 400424 402031 . - . ID=Physo136555;Parent=Physo136555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 400424 400644 . - 0 ID=Physo136555;Parent=Physo136555;rank=5 scaffold_46 . exon 400424 400644 . - . ID=Physo136555.5;Parent=Physo136555;constitutive=1;ensembl_phase=1;rank=5 scaffold_46 . CDS 400728 401390 . - 0 ID=Physo136555;Parent=Physo136555;rank=4 scaffold_46 . exon 400728 401390 . - . ID=Physo136555.4;Parent=Physo136555;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 401459 401560 . - 0 ID=Physo136555;Parent=Physo136555;rank=3 scaffold_46 . exon 401459 401560 . - . ID=Physo136555.3;Parent=Physo136555;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 401632 401671 . - 0 ID=Physo136555;Parent=Physo136555;rank=2 scaffold_46 . exon 401632 401671 . - . ID=Physo136555.2;Parent=Physo136555;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 401747 402031 . - 0 ID=Physo136555;Parent=Physo136555;rank=1 scaffold_46 . exon 401747 402031 . - . ID=Physo136555.1;Parent=Physo136555;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 402603 403480 . - . ID=Physo136556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460102;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 402603 403480 . - . ID=Physo136556;Parent=Physo136556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 402603 403480 . - . ID=Physo136556.1;Parent=Physo136556;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_46 . CDS 402707 403480 . - 0 ID=Physo136556;Parent=Physo136556;rank=1 scaffold_46 ensembl protein_coding_gene 404030 406260 . + . ID=Physo136557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460103;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 404030 406260 . + . ID=Physo136557;Parent=Physo136557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 404030 404609 . + 0 ID=Physo136557;Parent=Physo136557;rank=1 scaffold_46 . exon 404030 404609 . + . ID=Physo136557.1;Parent=Physo136557;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 404698 404801 . + 0 ID=Physo136557;Parent=Physo136557;rank=2 scaffold_46 . exon 404698 404801 . + . ID=Physo136557.2;Parent=Physo136557;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 405018 405842 . + 0 ID=Physo136557;Parent=Physo136557;rank=3 scaffold_46 . exon 405018 405842 . + . ID=Physo136557.3;Parent=Physo136557;constitutive=1;rank=3 scaffold_46 . CDS 405915 406127 . + 0 ID=Physo136557;Parent=Physo136557;rank=4 scaffold_46 . exon 405915 406260 . + . ID=Physo136557.4;Parent=Physo136557;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_46 . exon 396770 396961 . - . ID=Physo157439.3;Parent=Physo157439;constitutive=1;rank=3 scaffold_46 . exon 397230 397330 . - . ID=Physo157439.2;Parent=Physo157439;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . exon 397410 397980 . - . ID=Physo157439.1;Parent=Physo157439;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 398170 399934 . - . ID=Physo157442;biotype=protein_coding;external_name=C_scaffold_46000028;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 398170 399934 . - . ID=Physo157442;Parent=Physo157442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 398170 398393 . - 0 ID=Physo157442;Parent=Physo157442;rank=7 scaffold_46 . exon 398170 398393 . - . ID=Physo157442.7;Parent=Physo157442;constitutive=1;ensembl_phase=1;rank=7 scaffold_46 . CDS 398474 398648 . - 0 ID=Physo157442;Parent=Physo157442;rank=6 scaffold_46 . exon 398474 398648 . - . ID=Physo157442.6;Parent=Physo157442;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_46 . CDS 398725 399006 . - 0 ID=Physo157442;Parent=Physo157442;rank=5 scaffold_46 . exon 398725 399006 . - . ID=Physo157442.5;Parent=Physo157442;constitutive=1;rank=5 scaffold_46 . CDS 399093 399289 . - 0 ID=Physo157442;Parent=Physo157442;rank=4 scaffold_46 . exon 399093 399289 . - . ID=Physo157442.4;Parent=Physo157442;constitutive=1;ensembl_phase=1;rank=4 scaffold_46 . CDS 399365 399466 . - 0 ID=Physo157442;Parent=Physo157442;rank=3 scaffold_46 . exon 399365 399466 . - . ID=Physo157442.3;Parent=Physo157442;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_46 . CDS 399527 399566 . - 0 ID=Physo157442;Parent=Physo157442;rank=2 scaffold_46 . exon 399527 399566 . - . ID=Physo157442.2;Parent=Physo157442;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 399635 399934 . - 0 ID=Physo157442;Parent=Physo157442;rank=1 scaffold_46 . exon 399635 399934 . - . ID=Physo157442.1;Parent=Physo157442;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 406412 407965 . - . ID=Physo157447;biotype=protein_coding;external_name=C_scaffold_46000033;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 406412 407965 . - . ID=Physo157447;Parent=Physo157447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 406412 406623 . - 0 ID=Physo157447;Parent=Physo157447;rank=6 scaffold_46 . exon 406412 406623 . - . ID=Physo157447.6;Parent=Physo157447;constitutive=1;ensembl_phase=1;rank=6 scaffold_46 . CDS 406711 406846 . - 0 ID=Physo157447;Parent=Physo157447;rank=5 scaffold_46 . CDS 406920 407072 . - 0 ID=Physo157447;Parent=Physo157447;rank=4 scaffold_46 . CDS 407157 407190 . - 0 ID=Physo157447;Parent=Physo157447;rank=3 scaffold_46 . CDS 407285 407367 . - 0 ID=Physo157447;Parent=Physo157447;rank=2 scaffold_46 . CDS 407573 407965 . - 0 ID=Physo157447;Parent=Physo157447;rank=1 scaffold_46 . biological_region 409032 409036 0.999 - . logic_name=eponine scaffold_46 . biological_region 415260 415265 0.999 + . logic_name=eponine scaffold_46 . biological_region 415658 415662 0.999 - . logic_name=eponine scaffold_46 . biological_region 415716 415717 0.999 + . logic_name=eponine scaffold_46 . biological_region 416137 416137 0.999 + . logic_name=eponine scaffold_46 . biological_region 416230 416233 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 410445 411646 . + . ID=Physo108959;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_460006;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 410445 411646 . + . ID=Physo108959;Parent=Physo108959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 410445 410867 . + . ID=Physo108959.1;Parent=Physo108959;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_46 . CDS 410494 410867 . + 0 ID=Physo108959;Parent=Physo108959;rank=1 scaffold_46 . CDS 410958 411113 . + 0 ID=Physo108959;Parent=Physo108959;rank=2 scaffold_46 . exon 410958 411113 . + . ID=Physo108959.2;Parent=Physo108959;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 411205 411382 . + 0 ID=Physo108959;Parent=Physo108959;rank=3 scaffold_46 . exon 411205 411382 . + . ID=Physo108959.3;Parent=Physo108959;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 411461 411646 . + 0 ID=Physo108959;Parent=Physo108959;rank=4 scaffold_46 . exon 411461 411646 . + . ID=Physo108959.4;Parent=Physo108959;constitutive=1;rank=4 scaffold_46 ensembl protein_coding_gene 408906 410216 . + . ID=Physo136559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460105;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 408906 410216 . + . ID=Physo136559;Parent=Physo136559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 408906 409315 . + . ID=Physo136559.1;Parent=Physo136559;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 408944 409315 . + 0 ID=Physo136559;Parent=Physo136559;rank=1 scaffold_46 . CDS 409396 409555 . + 0 ID=Physo136559;Parent=Physo136559;rank=2 scaffold_46 . exon 409396 409555 . + . ID=Physo136559.2;Parent=Physo136559;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 409627 409702 . + 0 ID=Physo136559;Parent=Physo136559;rank=3 scaffold_46 . exon 409627 409702 . + . ID=Physo136559.3;Parent=Physo136559;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_46 . CDS 409773 409880 . + 0 ID=Physo136559;Parent=Physo136559;rank=4 scaffold_46 . exon 409773 409880 . + . ID=Physo136559.4;Parent=Physo136559;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_46 . CDS 409964 410216 . + 0 ID=Physo136559;Parent=Physo136559;rank=5 scaffold_46 . exon 409964 410216 . + . ID=Physo136559.5;Parent=Physo136559;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 . exon 406711 406846 . - . ID=Physo157447.5;Parent=Physo157447;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_46 . exon 406920 407072 . - . ID=Physo157447.4;Parent=Physo157447;constitutive=1;rank=4 scaffold_46 . exon 407157 407190 . - . ID=Physo157447.3;Parent=Physo157447;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . exon 407285 407367 . - . ID=Physo157447.2;Parent=Physo157447;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_46 . exon 407573 407965 . - . ID=Physo157447.1;Parent=Physo157447;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 412981 415690 . + . ID=Physo157450;biotype=protein_coding;external_name=C_scaffold_46000036;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 412981 415690 . + . ID=Physo157450;Parent=Physo157450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 412981 413130 . + 0 ID=Physo157450;Parent=Physo157450;rank=1 scaffold_46 . exon 412981 413130 . + . ID=Physo157450.1;Parent=Physo157450;constitutive=1;rank=1 scaffold_46 . CDS 413293 413356 . + 0 ID=Physo157450;Parent=Physo157450;rank=2 scaffold_46 . exon 413293 413356 . + . ID=Physo157450.2;Parent=Physo157450;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_46 . CDS 413396 413705 . + 0 ID=Physo157450;Parent=Physo157450;rank=3 scaffold_46 . exon 413396 413705 . + . ID=Physo157450.3;Parent=Physo157450;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_46 . CDS 413850 414078 . + 0 ID=Physo157450;Parent=Physo157450;rank=4 scaffold_46 . exon 413850 414078 . + . ID=Physo157450.4;Parent=Physo157450;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . CDS 414196 414393 . + 0 ID=Physo157450;Parent=Physo157450;rank=5 scaffold_46 . exon 414196 414393 . + . ID=Physo157450.5;Parent=Physo157450;constitutive=1;rank=5 scaffold_46 . CDS 414442 414542 . + 0 ID=Physo157450;Parent=Physo157450;rank=6 scaffold_46 . exon 414442 414542 . + . ID=Physo157450.6;Parent=Physo157450;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_46 . CDS 414615 414847 . + 0 ID=Physo157450;Parent=Physo157450;rank=7 scaffold_46 . exon 414615 414847 . + . ID=Physo157450.7;Parent=Physo157450;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_46 . CDS 414937 415038 . + 0 ID=Physo157450;Parent=Physo157450;rank=8 scaffold_46 . exon 414937 415038 . + . ID=Physo157450.8;Parent=Physo157450;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_46 . CDS 415122 415690 . + 0 ID=Physo157450;Parent=Physo157450;rank=9 scaffold_46 . exon 415122 415690 . + . ID=Physo157450.9;Parent=Physo157450;constitutive=1;ensembl_phase=1;rank=9 scaffold_46 . repeat_region 416732 416740 . ? . description=dust scaffold_46 . repeat_region 416930 416953 . ? . description=trf scaffold_46 . repeat_region 416930 416955 . ? . description=dust scaffold_46 . repeat_region 417096 417157 . ? . description=dust scaffold_46 . repeat_region 422857 422876 . ? . description=trf scaffold_46 . repeat_region 423121 423134 . ? . description=dust scaffold_46 . repeat_region 423624 423662 . ? . description=dust scaffold_46 ensembl protein_coding_gene 417159 420623 . + . ID=Physo136562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460108;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 417159 420623 . + . ID=Physo136562;Parent=Physo136562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 417159 420623 . + 0 ID=Physo136562;Parent=Physo136562;rank=1 scaffold_46 . exon 417159 420623 . + . ID=Physo136562.1;Parent=Physo136562;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 421094 423018 . - . ID=Physo136563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460109;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 421094 423018 . - . ID=Physo136563;Parent=Physo136563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 421094 421192 . - 0 ID=Physo136563;Parent=Physo136563;rank=2 scaffold_46 . exon 421094 421192 . - . ID=Physo136563.2;Parent=Physo136563;constitutive=1;rank=2 scaffold_46 . CDS 421231 423018 . - 0 ID=Physo136563;Parent=Physo136563;rank=1 scaffold_46 . exon 421231 423018 . - . ID=Physo136563.1;Parent=Physo136563;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 423367 425849 . + . ID=Physo136564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460110;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 423367 425849 . + . ID=Physo136564;Parent=Physo136564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 423367 423616 . + 0 ID=Physo136564;Parent=Physo136564;rank=1 scaffold_46 . exon 423367 423616 . + . ID=Physo136564.1;Parent=Physo136564;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 423696 423937 . + 0 ID=Physo136564;Parent=Physo136564;rank=2 scaffold_46 . exon 423696 423937 . + . ID=Physo136564.2;Parent=Physo136564;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 424018 424137 . + 0 ID=Physo136564;Parent=Physo136564;rank=3 scaffold_46 . exon 424018 424137 . + . ID=Physo136564.3;Parent=Physo136564;constitutive=1;rank=3 scaffold_46 . CDS 424229 424920 . + 0 ID=Physo136564;Parent=Physo136564;rank=4 scaffold_46 . exon 424229 424920 . + . ID=Physo136564.4;Parent=Physo136564;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_46 . CDS 424995 425196 . + 0 ID=Physo136564;Parent=Physo136564;rank=5 scaffold_46 . exon 424995 425196 . + . ID=Physo136564.5;Parent=Physo136564;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 . CDS 425272 425609 . + 0 ID=Physo136564;Parent=Physo136564;rank=6 scaffold_46 . exon 425272 425609 . + . ID=Physo136564.6;Parent=Physo136564;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_46 . CDS 425684 425849 . + 0 ID=Physo136564;Parent=Physo136564;rank=7 scaffold_46 . exon 425684 425849 . + . ID=Physo136564.7;Parent=Physo136564;constitutive=1;ensembl_phase=2;rank=7 scaffold_46 . biological_region 427255 427259 0.999 - . logic_name=eponine scaffold_46 . biological_region 427339 427342 0.999 + . logic_name=eponine scaffold_46 . biological_region 427358 427362 0.999 - . logic_name=eponine scaffold_46 . biological_region 427412 427417 0.999 - . logic_name=eponine scaffold_46 . biological_region 427458 427462 0.999 - . logic_name=eponine scaffold_46 . biological_region 427467 427472 0.999 + . logic_name=eponine scaffold_46 . biological_region 427687 427687 0.999 + . logic_name=eponine scaffold_46 . biological_region 429343 429344 0.999 + . logic_name=eponine scaffold_46 . biological_region 430369 430373 0.999 + . logic_name=eponine scaffold_46 . biological_region 430441 430443 0.999 - . logic_name=eponine scaffold_46 . biological_region 430486 430491 0.999 - . logic_name=eponine scaffold_46 . biological_region 430513 430516 0.999 - . logic_name=eponine scaffold_46 . repeat_region 434871 435100 . - . description=Polinton-1_PI scaffold_46 . biological_region 435158 435160 0.999 + . logic_name=eponine scaffold_46 . biological_region 435340 435340 0.999 + . logic_name=eponine scaffold_46 ensembl protein_coding_gene 427180 429609 . + . ID=Physo136565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460111;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 427180 429609 . + . ID=Physo136565;Parent=Physo136565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 427180 429609 . + 0 ID=Physo136565;Parent=Physo136565;rank=1 scaffold_46 . exon 427180 429609 . + . ID=Physo136565.1;Parent=Physo136565;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 430903 432560 . - . ID=Physo136566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460112;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 430903 432560 . - . ID=Physo136566;Parent=Physo136566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 430903 431898 . - 0 ID=Physo136566;Parent=Physo136566;rank=3 scaffold_46 . exon 430903 431898 . - . ID=Physo136566.3;Parent=Physo136566;constitutive=1;rank=3 scaffold_46 . CDS 431939 432341 . - 0 ID=Physo136566;Parent=Physo136566;rank=2 scaffold_46 . exon 431939 432341 . - . ID=Physo136566.2;Parent=Physo136566;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 . CDS 432532 432560 . - 0 ID=Physo136566;Parent=Physo136566;rank=1 scaffold_46 . exon 432532 432560 . - . ID=Physo136566.1;Parent=Physo136566;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 ensembl protein_coding_gene 434838 437207 . + . ID=Physo136567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460113;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 434838 437207 . + . ID=Physo136567;Parent=Physo136567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 434838 435691 . + . ID=Physo136567.1;Parent=Physo136567;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 434905 435691 . + 0 ID=Physo136567;Parent=Physo136567;rank=1 scaffold_46 . CDS 435730 437207 . + 0 ID=Physo136567;Parent=Physo136567;rank=2 scaffold_46 . exon 435730 437207 . + . ID=Physo136567.2;Parent=Physo136567;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . repeat_region 442120 442170 . ? . description=dust scaffold_46 ensembl protein_coding_gene 437307 439065 . - . ID=Physo136568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460114;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 437307 439065 . - . ID=Physo136568;Parent=Physo136568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 437307 437849 . - 0 ID=Physo136568;Parent=Physo136568;rank=7 scaffold_46 . exon 437307 437849 . - . ID=Physo136568.7;Parent=Physo136568;constitutive=1;rank=7 scaffold_46 . CDS 437908 438033 . - 0 ID=Physo136568;Parent=Physo136568;rank=6 scaffold_46 . exon 437908 438033 . - . ID=Physo136568.6;Parent=Physo136568;constitutive=1;rank=6 scaffold_46 . CDS 438107 438178 . - 0 ID=Physo136568;Parent=Physo136568;rank=5 scaffold_46 . exon 438107 438178 . - . ID=Physo136568.5;Parent=Physo136568;constitutive=1;rank=5 scaffold_46 . CDS 438287 438391 . - 0 ID=Physo136568;Parent=Physo136568;rank=4 scaffold_46 . exon 438287 438391 . - . ID=Physo136568.4;Parent=Physo136568;constitutive=1;rank=4 scaffold_46 . CDS 438442 438573 . - 0 ID=Physo136568;Parent=Physo136568;rank=3 scaffold_46 . exon 438442 438573 . - . ID=Physo136568.3;Parent=Physo136568;constitutive=1;rank=3 scaffold_46 . CDS 438644 438760 . - 0 ID=Physo136568;Parent=Physo136568;rank=2 scaffold_46 . exon 438644 438760 . - . ID=Physo136568.2;Parent=Physo136568;constitutive=1;rank=2 scaffold_46 . CDS 438844 439065 . - 0 ID=Physo136568;Parent=Physo136568;rank=1 scaffold_46 . exon 438844 439065 . - . ID=Physo136568.1;Parent=Physo136568;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 439236 441411 . + . ID=Physo136569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460115;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 439236 441411 . + . ID=Physo136569;Parent=Physo136569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 439236 440175 . + 0 ID=Physo136569;Parent=Physo136569;rank=1 scaffold_46 . exon 439236 440175 . + . ID=Physo136569.1;Parent=Physo136569;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 440265 440394 . + 0 ID=Physo136569;Parent=Physo136569;rank=2 scaffold_46 . exon 440265 440394 . + . ID=Physo136569.2;Parent=Physo136569;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_46 . CDS 440468 440669 . + 0 ID=Physo136569;Parent=Physo136569;rank=3 scaffold_46 . exon 440468 440669 . + . ID=Physo136569.3;Parent=Physo136569;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . CDS 440743 441411 . + 0 ID=Physo136569;Parent=Physo136569;rank=4 scaffold_46 . exon 440743 441411 . + . ID=Physo136569.4;Parent=Physo136569;constitutive=1;rank=4 scaffold_46 ensembl protein_coding_gene 441928 442976 . + . ID=Physo136570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460116;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 441928 442976 . + . ID=Physo136570;Parent=Physo136570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 441928 441959 . + 0 ID=Physo136570;Parent=Physo136570;rank=1 scaffold_46 . exon 441928 441959 . + . ID=Physo136570.1;Parent=Physo136570;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 442044 442685 . + 0 ID=Physo136570;Parent=Physo136570;rank=2 scaffold_46 . exon 442044 442685 . + . ID=Physo136570.2;Parent=Physo136570;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_46 . CDS 442841 442976 . + 0 ID=Physo136570;Parent=Physo136570;rank=3 scaffold_46 . exon 442841 442976 . + . ID=Physo136570.3;Parent=Physo136570;constitutive=1;ensembl_phase=2;rank=3 scaffold_46 . biological_region 448249 448251 0.999 - . logic_name=eponine scaffold_46 . biological_region 449140 449143 0.999 - . logic_name=eponine scaffold_46 . biological_region 449574 449575 0.999 + . logic_name=eponine scaffold_46 . biological_region 449592 449593 0.999 + . logic_name=eponine scaffold_46 . biological_region 450582 450584 0.999 - . logic_name=eponine scaffold_46 . biological_region 451329 451329 0.999 + . logic_name=eponine scaffold_46 . biological_region 454517 454522 0.999 - . logic_name=eponine scaffold_46 ensembl protein_coding_gene 447135 448278 . - . ID=Physo136571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460117;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 447135 448278 . - . ID=Physo136571;Parent=Physo136571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 447135 447188 . - 0 ID=Physo136571;Parent=Physo136571;rank=2 scaffold_46 . exon 447135 447188 . - . ID=Physo136571.2;Parent=Physo136571;constitutive=1;rank=2 scaffold_46 . CDS 447466 448278 . - 0 ID=Physo136571;Parent=Physo136571;rank=1 scaffold_46 . exon 447466 448278 . - . ID=Physo136571.1;Parent=Physo136571;constitutive=1;rank=1 scaffold_46 ensembl protein_coding_gene 448444 449042 . + . ID=Physo136572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460118;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 448444 449042 . + . ID=Physo136572;Parent=Physo136572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 448444 449007 . + 0 ID=Physo136572;Parent=Physo136572;rank=1 scaffold_46 . exon 448444 449007 . + . ID=Physo136572.1;Parent=Physo136572;constitutive=1;rank=1 scaffold_46 . CDS 449037 449042 . + 0 ID=Physo136572;Parent=Physo136572;rank=2 scaffold_46 . exon 449037 449042 . + . ID=Physo136572.2;Parent=Physo136572;constitutive=1;rank=2 scaffold_46 ensembl protein_coding_gene 454859 462538 . + . ID=Physo136577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460123;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 454859 462538 . + . ID=Physo136577;Parent=Physo136577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 454859 458005 . + 0 ID=Physo136577;Parent=Physo136577;rank=1 scaffold_46 . exon 454859 458005 . + . ID=Physo136577.1;Parent=Physo136577;constitutive=1;rank=1 scaffold_46 . CDS 458117 459040 . + 0 ID=Physo136577;Parent=Physo136577;rank=2 scaffold_46 . CDS 459411 459460 . + 0 ID=Physo136577;Parent=Physo136577;rank=3 scaffold_46 . CDS 459523 459586 . + 0 ID=Physo136577;Parent=Physo136577;rank=4 scaffold_46 . CDS 459657 460830 . + 0 ID=Physo136577;Parent=Physo136577;rank=5 scaffold_46 . CDS 460885 461315 . + 0 ID=Physo136577;Parent=Physo136577;rank=6 scaffold_46 . CDS 461392 461639 . + 0 ID=Physo136577;Parent=Physo136577;rank=7 scaffold_46 . CDS 461711 461912 . + 0 ID=Physo136577;Parent=Physo136577;rank=8 scaffold_46 . CDS 462079 462114 . + 0 ID=Physo136577;Parent=Physo136577;rank=9 scaffold_46 . CDS 462179 462538 . + 0 ID=Physo136577;Parent=Physo136577;rank=10 scaffold_46 ensembl protein_coding_gene 449239 454543 . - . ID=Physo157453;biotype=protein_coding;external_name=C_scaffold_46000039;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 449239 454543 . - . ID=Physo157453;Parent=Physo157453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 449239 450408 . - 0 ID=Physo157453;Parent=Physo157453;rank=6 scaffold_46 . exon 449239 450408 . - . ID=Physo157453.6;Parent=Physo157453;constitutive=1;rank=6 scaffold_46 . CDS 450454 450720 . - 0 ID=Physo157453;Parent=Physo157453;rank=5 scaffold_46 . exon 450454 450720 . - . ID=Physo157453.5;Parent=Physo157453;constitutive=1;rank=5 scaffold_46 . CDS 451066 452349 . - 0 ID=Physo157453;Parent=Physo157453;rank=4 scaffold_46 . exon 451066 452349 . - . ID=Physo157453.4;Parent=Physo157453;constitutive=1;rank=4 scaffold_46 . CDS 452417 452593 . - 0 ID=Physo157453;Parent=Physo157453;rank=3 scaffold_46 . exon 452417 452593 . - . ID=Physo157453.3;Parent=Physo157453;constitutive=1;rank=3 scaffold_46 . CDS 452750 454039 . - 0 ID=Physo157453;Parent=Physo157453;rank=2 scaffold_46 . exon 452750 454039 . - . ID=Physo157453.2;Parent=Physo157453;constitutive=1;rank=2 scaffold_46 . CDS 454112 454543 . - 0 ID=Physo157453;Parent=Physo157453;rank=1 scaffold_46 . exon 454112 454543 . - . ID=Physo157453.1;Parent=Physo157453;constitutive=1;rank=1 scaffold_46 . repeat_region 461055 461107 . ? . description=trf scaffold_46 . exon 458117 459040 . + . ID=Physo136577.2;Parent=Physo136577;constitutive=1;rank=2 scaffold_46 . exon 459411 459460 . + . ID=Physo136577.3;Parent=Physo136577;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_46 . exon 459523 459586 . + . ID=Physo136577.4;Parent=Physo136577;constitutive=1;ensembl_phase=2;rank=4 scaffold_46 . exon 459657 460830 . + . ID=Physo136577.5;Parent=Physo136577;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_46 . exon 460885 461315 . + . ID=Physo136577.6;Parent=Physo136577;constitutive=1;ensembl_phase=1;rank=6 scaffold_46 . exon 461392 461639 . + . ID=Physo136577.7;Parent=Physo136577;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_46 . exon 461711 461912 . + . ID=Physo136577.8;Parent=Physo136577;constitutive=1;ensembl_phase=2;rank=8 scaffold_46 . exon 462079 462114 . + . ID=Physo136577.9;Parent=Physo136577;constitutive=1;rank=9 scaffold_46 . exon 462179 462538 . + . ID=Physo136577.10;Parent=Physo136577;constitutive=1;rank=10 scaffold_46 ensembl protein_coding_gene 462807 463695 . - . ID=Physo136578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460124;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 462807 463695 . - . ID=Physo136578;Parent=Physo136578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 462807 463060 . - . ID=Physo136578.5;Parent=Physo136578;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_46 . CDS 462990 463060 . - 0 ID=Physo136578;Parent=Physo136578;rank=5 scaffold_46 . CDS 463132 463219 . - 0 ID=Physo136578;Parent=Physo136578;rank=4 scaffold_46 . exon 463132 463219 . - . ID=Physo136578.4;Parent=Physo136578;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_46 . CDS 463305 463412 . - 0 ID=Physo136578;Parent=Physo136578;rank=3 scaffold_46 . exon 463305 463412 . - . ID=Physo136578.3;Parent=Physo136578;constitutive=1;rank=3 scaffold_46 . CDS 463486 463599 . - 0 ID=Physo136578;Parent=Physo136578;rank=2 scaffold_46 . exon 463486 463599 . - . ID=Physo136578.2;Parent=Physo136578;constitutive=1;rank=2 scaffold_46 . CDS 463689 463691 . - 0 ID=Physo136578;Parent=Physo136578;rank=1 scaffold_46 . exon 463689 463695 . - . ID=Physo136578.1;Parent=Physo136578;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 463832 465968 . + . ID=Physo136579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460125;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 463832 465968 . + . ID=Physo136579;Parent=Physo136579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . exon 463832 463979 . + . ID=Physo136579.1;Parent=Physo136579;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 . CDS 463839 463979 . + 0 ID=Physo136579;Parent=Physo136579;rank=1 scaffold_46 . CDS 464080 464328 . + 0 ID=Physo136579;Parent=Physo136579;rank=2 scaffold_46 . exon 464080 464328 . + . ID=Physo136579.2;Parent=Physo136579;constitutive=1;rank=2 scaffold_46 . CDS 464421 464551 . + 0 ID=Physo136579;Parent=Physo136579;rank=3 scaffold_46 . exon 464421 464551 . + . ID=Physo136579.3;Parent=Physo136579;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_46 . CDS 464624 464824 . + 0 ID=Physo136579;Parent=Physo136579;rank=4 scaffold_46 . exon 464624 464824 . + . ID=Physo136579.4;Parent=Physo136579;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_46 . CDS 464936 465968 . + 0 ID=Physo136579;Parent=Physo136579;rank=5 scaffold_46 . exon 464936 465968 . + . ID=Physo136579.5;Parent=Physo136579;constitutive=1;ensembl_phase=2;rank=5 scaffold_46 . biological_region 468829 468834 0.999 - . logic_name=eponine scaffold_46 . biological_region 473030 473034 0.999 + . logic_name=eponine scaffold_46 . biological_region 473274 473276 0.999 + . logic_name=eponine scaffold_46 . repeat_region 474116 474125 . ? . description=dust scaffold_46 ensembl protein_coding_gene 466219 468521 . - . ID=Physo117783;biotype=protein_coding;external_name=estExt_Genewise1.C_460042;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 466219 468521 . - . ID=Physo117783;Parent=Physo117783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 466219 468216 . - 0 ID=Physo117783;Parent=Physo117783;rank=1 scaffold_46 . exon 466219 468363 . - . ID=Physo117783.2;Parent=Physo117783;constitutive=1;ensembl_phase=-1;rank=2 scaffold_46 . exon 468441 468521 . - . ID=Physo117783.1;Parent=Physo117783;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 468984 473450 . - . ID=Physo136582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460128;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 468984 473450 . - . ID=Physo136582;Parent=Physo136582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 468984 473444 . - 0 ID=Physo136582;Parent=Physo136582;rank=1 scaffold_46 . exon 468984 473450 . - . ID=Physo136582.1;Parent=Physo136582;constitutive=1;ensembl_phase=-1;rank=1 scaffold_46 ensembl protein_coding_gene 475872 476619 . + . ID=Physo136583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460129;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 475872 476619 . + . ID=Physo136583;Parent=Physo136583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 475872 475942 . + 0 ID=Physo136583;Parent=Physo136583;rank=1 scaffold_46 . exon 475872 475942 . + . ID=Physo136583.1;Parent=Physo136583;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_46 . CDS 475989 476619 . + 0 ID=Physo136583;Parent=Physo136583;rank=2 scaffold_46 . repeat_region 480178 480248 . ? . description=trf scaffold_46 . repeat_region 482649 482762 . ? . description=trf scaffold_46 . repeat_region 483370 483398 . ? . description=trf scaffold_46 . exon 475989 476619 . + . ID=Physo136583.2;Parent=Physo136583;constitutive=1;ensembl_phase=2;rank=2 scaffold_46 ensembl protein_coding_gene 479209 480279 . + . ID=Physo136584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460130;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 479209 480279 . + . ID=Physo136584;Parent=Physo136584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 479209 479404 . + 0 ID=Physo136584;Parent=Physo136584;rank=1 scaffold_46 . exon 479209 479404 . + . ID=Physo136584.1;Parent=Physo136584;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 479495 479803 . + 0 ID=Physo136584;Parent=Physo136584;rank=2 scaffold_46 . exon 479495 479803 . + . ID=Physo136584.2;Parent=Physo136584;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 479849 480279 . + 0 ID=Physo136584;Parent=Physo136584;rank=3 scaffold_46 . exon 479849 480279 . + . ID=Physo136584.3;Parent=Physo136584;constitutive=1;ensembl_phase=1;rank=3 scaffold_46 ensembl protein_coding_gene 481512 482576 . + . ID=Physo136585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460131;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 481512 482576 . + . ID=Physo136585;Parent=Physo136585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 481512 481839 . + 0 ID=Physo136585;Parent=Physo136585;rank=1 scaffold_46 . exon 481512 481839 . + . ID=Physo136585.1;Parent=Physo136585;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . CDS 482011 482576 . + 0 ID=Physo136585;Parent=Physo136585;rank=2 scaffold_46 . exon 482011 482576 . + . ID=Physo136585.2;Parent=Physo136585;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . repeat_region 486309 486322 . ? . description=dust scaffold_46 . repeat_region 487936 487945 . ? . description=dust scaffold_46 . biological_region 489131 489134 0.999 - . logic_name=eponine scaffold_46 . repeat_region 489260 489270 . ? . description=dust scaffold_46 . repeat_region 489323 489330 . ? . description=dust scaffold_46 . repeat_region 492672 492845 . + . description=(CAG)n scaffold_46 . repeat_region 492724 492787 . ? . description=dust scaffold_46 . repeat_region 494577 494585 . ? . description=dust scaffold_46 . repeat_region 494612 494627 . ? . description=dust scaffold_46 . repeat_region 494863 494879 . ? . description=dust scaffold_46 ensembl pseudogenic_tRNA 494900 494969 . + . ID=EPrPSOG00000000099;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_46 ensembl transcript 494900 494969 . + . ID=EPrPSOT00000000099;Parent=EPrPSOG00000000099;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_46 . exon 494900 494969 . + . ID=EPrPSOE00000000099;Parent=EPrPSOT00000000099;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . repeat_region 498505 498529 . ? . description=trf scaffold_46 . repeat_region 498633 498664 . ? . description=trf scaffold_46 . repeat_region 499580 499638 . ? . description=trf scaffold_46 ensembl pseudogenic_tRNA 503959 504031 . + . ID=EPrPSOG00000000020;biotype=tRNA_pseudogene;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_46 ensembl transcript 503959 504031 . + . ID=EPrPSOT00000000020;Parent=EPrPSOG00000000020;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_46 ensembl pseudogenic_tRNA 505073 505145 . + . ID=EPrPSOG00000000116;biotype=tRNA_pseudogene;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_46 ensembl transcript 505073 505145 . + . ID=EPrPSOT00000000116;Parent=EPrPSOG00000000116;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_46 ensembl pseudogenic_tRNA 504516 504588 . + . ID=EPrPSOG00000000233;biotype=tRNA_pseudogene;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_46 ensembl transcript 504516 504588 . + . ID=EPrPSOT00000000233;Parent=EPrPSOG00000000233;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_46 . exon 503959 504031 . + . ID=EPrPSOE00000000020;Parent=EPrPSOT00000000020;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . exon 505073 505145 . + . ID=EPrPSOE00000000116;Parent=EPrPSOT00000000116;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 . exon 504516 504588 . + . ID=EPrPSOE00000000233;Parent=EPrPSOT00000000233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_46 ensembl protein_coding_gene 501968 502992 . - . ID=Physo136586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_460132;logic_name=jgi_physo1_1 scaffold_46 ensembl transcript 501968 502992 . - . ID=Physo136586;Parent=Physo136586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_46 . CDS 501968 502261 . - 0 ID=Physo136586;Parent=Physo136586;rank=3 scaffold_46 . exon 501968 502261 . - . ID=Physo136586.3;Parent=Physo136586;constitutive=1;rank=3 scaffold_46 . CDS 502291 502463 . - 0 ID=Physo136586;Parent=Physo136586;rank=2 scaffold_46 . exon 502291 502463 . - . ID=Physo136586.2;Parent=Physo136586;constitutive=1;ensembl_phase=1;rank=2 scaffold_46 . CDS 502506 502992 . - 0 ID=Physo136586;Parent=Physo136586;rank=1 scaffold_46 . exon 502506 502992 . - . ID=Physo136586.1;Parent=Physo136586;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_41 1 514006 scaffold_41 . repeat_region 1 510 . ? . description=trf scaffold_41 . repeat_region 715 1178 . ? . description=trf scaffold_41 . repeat_region 1719 1729 . ? . description=dust scaffold_41 . repeat_region 5509 5517 . ? . description=dust scaffold_41 . repeat_region 6144 6153 . ? . description=dust scaffold_41 . repeat_region 6312 7891 . + . description=GypsyPi-1c_I-int scaffold_41 . biological_region 8127 8130 0.999 - . logic_name=eponine scaffold_41 . repeat_region 8351 8493 . + . description=GypsyPi-1c_I-int scaffold_41 . repeat_region 9076 9083 . ? . description=dust scaffold_41 ensembl protein_coding_gene 7000 8321 . + . ID=Physo135810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410001;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 7000 8321 . + . ID=Physo135810;Parent=Physo135810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 7000 7501 . + 0 ID=Physo135810;Parent=Physo135810;rank=1 scaffold_41 . exon 7000 7501 . + . ID=Physo135810.1;Parent=Physo135810;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 7794 8030 . + 0 ID=Physo135810;Parent=Physo135810;rank=2 scaffold_41 . exon 7794 8030 . + . ID=Physo135810.2;Parent=Physo135810;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 8176 8321 . + 0 ID=Physo135810;Parent=Physo135810;rank=3 scaffold_41 . exon 8176 8321 . + . ID=Physo135810.3;Parent=Physo135810;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . repeat_region 19888 19912 . ? . description=dust scaffold_41 . repeat_region 20868 21938 . - . description=GypsyPi-1c_I-int scaffold_41 . repeat_region 23547 23618 . + . description=GypsyPi-1c_I-int scaffold_41 . biological_region 24161 24168 0.999 + . logic_name=eponine scaffold_41 . biological_region 24523 24525 0.999 + . logic_name=eponine scaffold_41 . biological_region 24592 24594 0.999 + . logic_name=eponine scaffold_41 . repeat_region 25192 27579 . + . description=GypsyPi-1c_I-int scaffold_41 . repeat_region 27662 27768 . ? . description=trf scaffold_41 . repeat_region 27873 28153 . + . description=GypsyPi-1c_I-int scaffold_41 . repeat_region 28242 28274 . ? . description=trf scaffold_41 . biological_region 28761 28765 0.999 - . logic_name=eponine scaffold_41 . biological_region 29124 29128 0.999 + . logic_name=eponine scaffold_41 . biological_region 29310 29317 0.999 + . logic_name=eponine scaffold_41 . biological_region 29411 29412 0.999 - . logic_name=eponine scaffold_41 . biological_region 29427 29432 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 24516 27915 . + . ID=Physo135811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410002;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 24516 27915 . + . ID=Physo135811;Parent=Physo135811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 24516 24722 . + 0 ID=Physo135811;Parent=Physo135811;rank=1 scaffold_41 . exon 24516 24722 . + . ID=Physo135811.1;Parent=Physo135811;constitutive=1;rank=1 scaffold_41 . CDS 24836 25270 . + 0 ID=Physo135811;Parent=Physo135811;rank=2 scaffold_41 . exon 24836 25270 . + . ID=Physo135811.2;Parent=Physo135811;constitutive=1;rank=2 scaffold_41 . CDS 25303 26963 . + 0 ID=Physo135811;Parent=Physo135811;rank=3 scaffold_41 . exon 25303 26963 . + . ID=Physo135811.3;Parent=Physo135811;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 27050 27868 . + 0 ID=Physo135811;Parent=Physo135811;rank=4 scaffold_41 . exon 27050 27868 . + . ID=Physo135811.4;Parent=Physo135811;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_41 . CDS 27909 27915 . + 0 ID=Physo135811;Parent=Physo135811;rank=5 scaffold_41 . exon 27909 27915 . + . ID=Physo135811.5;Parent=Physo135811;constitutive=1;ensembl_phase=2;rank=5 scaffold_41 ensembl protein_coding_gene 29263 29676 . - . ID=Physo135812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410003;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 29263 29676 . - . ID=Physo135812;Parent=Physo135812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 29263 29676 . - 0 ID=Physo135812;Parent=Physo135812;rank=1 scaffold_41 . exon 29263 29676 . - . ID=Physo135812.1;Parent=Physo135812;constitutive=1;rank=1 scaffold_41 ensembl tRNA_gene 32146 32226 . + . ID=EPrPSOG00000000084;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_41 ensembl transcript 32146 32226 . + . ID=EPrPSOT00000000084;Parent=EPrPSOG00000000084;biotype=tRNA;logic_name=ncrna_eg scaffold_41 ensembl tRNA_gene 32956 33036 . + . ID=EPrPSOG00000000234;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_41 ensembl transcript 32956 33036 . + . ID=EPrPSOT00000000234;Parent=EPrPSOG00000000234;biotype=tRNA;logic_name=ncrna_eg scaffold_41 ensembl tRNA_gene 32551 32631 . + . ID=EPrPSOG00000000278;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_41 ensembl transcript 32551 32631 . + . ID=EPrPSOT00000000278;Parent=EPrPSOG00000000278;biotype=tRNA;logic_name=ncrna_eg scaffold_41 . exon 32146 32226 . + . ID=EPrPSOE00000000084;Parent=EPrPSOT00000000084;constitutive=1;rank=1 scaffold_41 . exon 32956 33036 . + . ID=EPrPSOE00000000234;Parent=EPrPSOT00000000234;constitutive=1;rank=1 scaffold_41 . exon 32551 32631 . + . ID=EPrPSOE00000000278;Parent=EPrPSOT00000000278;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 34222 37910 . - . ID=Physo135813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410004;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 34222 37910 . - . ID=Physo135813;Parent=Physo135813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 34222 34828 . - . ID=Physo135813.4;Parent=Physo135813;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_41 . CDS 34265 34828 . - 0 ID=Physo135813;Parent=Physo135813;rank=4 scaffold_41 . CDS 34912 35357 . - 0 ID=Physo135813;Parent=Physo135813;rank=3 scaffold_41 . exon 34912 35357 . - . ID=Physo135813.3;Parent=Physo135813;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 35798 37280 . - 0 ID=Physo135813;Parent=Physo135813;rank=2 scaffold_41 . exon 35798 37280 . - . ID=Physo135813.2;Parent=Physo135813;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 37363 37551 . - 0 ID=Physo135813;Parent=Physo135813;rank=1 scaffold_41 . exon 37363 37910 . - . ID=Physo135813.1;Parent=Physo135813;constitutive=1;ensembl_phase=-1;rank=1 scaffold_41 ensembl protein_coding_gene 39338 39904 . - . ID=Physo157301;biotype=protein_coding;external_name=C_scaffold_41000003;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 39338 39904 . - . ID=Physo157301;Parent=Physo157301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 39338 39522 . - 0 ID=Physo157301;Parent=Physo157301;rank=2 scaffold_41 . exon 39338 39522 . - . ID=Physo157301.2;Parent=Physo157301;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 39697 39904 . - 0 ID=Physo157301;Parent=Physo157301;rank=1 scaffold_41 . biological_region 41144 41145 0.999 + . logic_name=eponine scaffold_41 . biological_region 44016 44017 0.999 + . logic_name=eponine scaffold_41 . repeat_region 46494 46514 . ? . description=dust scaffold_41 . biological_region 47415 47417 0.999 + . logic_name=eponine scaffold_41 . biological_region 47493 47494 0.999 + . logic_name=eponine scaffold_41 . biological_region 47580 47581 0.999 - . logic_name=eponine scaffold_41 . biological_region 47608 47611 0.999 - . logic_name=eponine scaffold_41 . repeat_region 47790 47841 . ? . description=dust scaffold_41 ensembl protein_coding_gene 48108 49604 . - . ID=Physo135815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410006;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 48108 49604 . - . ID=Physo135815;Parent=Physo135815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 48108 49406 . - 0 ID=Physo135815;Parent=Physo135815;rank=2 scaffold_41 . exon 48108 49406 . - . ID=Physo135815.2;Parent=Physo135815;constitutive=1;rank=2 scaffold_41 . CDS 49533 49604 . - 0 ID=Physo135815;Parent=Physo135815;rank=1 scaffold_41 . exon 39697 39904 . - . ID=Physo157301.1;Parent=Physo157301;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 43612 45870 . + . ID=Physo157302;biotype=protein_coding;external_name=C_scaffold_41000004;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 43612 45870 . + . ID=Physo157302;Parent=Physo157302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 43612 44312 . + 0 ID=Physo157302;Parent=Physo157302;rank=1 scaffold_41 . exon 43612 44312 . + . ID=Physo157302.1;Parent=Physo157302;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 44361 44549 . + 0 ID=Physo157302;Parent=Physo157302;rank=2 scaffold_41 . exon 44361 44549 . + . ID=Physo157302.2;Parent=Physo157302;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_41 . CDS 44834 45183 . + 0 ID=Physo157302;Parent=Physo157302;rank=3 scaffold_41 . exon 44834 45183 . + . ID=Physo157302.3;Parent=Physo157302;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 45223 45623 . + 0 ID=Physo157302;Parent=Physo157302;rank=4 scaffold_41 . exon 45223 45623 . + . ID=Physo157302.4;Parent=Physo157302;constitutive=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 45835 45870 . + 0 ID=Physo157302;Parent=Physo157302;rank=5 scaffold_41 . exon 45835 45870 . + . ID=Physo157302.5;Parent=Physo157302;constitutive=1;rank=5 scaffold_41 . repeat_region 52739 52793 . ? . description=trf scaffold_41 . repeat_region 56617 56645 . ? . description=trf scaffold_41 . exon 49533 49604 . - . ID=Physo135815.1;Parent=Physo135815;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 52876 59780 . + . ID=Physo157303;biotype=protein_coding;external_name=C_scaffold_41000005;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 52876 59780 . + . ID=Physo157303;Parent=Physo157303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 52876 52979 . + 0 ID=Physo157303;Parent=Physo157303;rank=1 scaffold_41 . exon 52876 52979 . + . ID=Physo157303.1;Parent=Physo157303;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 53024 53138 . + 0 ID=Physo157303;Parent=Physo157303;rank=2 scaffold_41 . exon 53024 53138 . + . ID=Physo157303.2;Parent=Physo157303;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 53173 53371 . + 0 ID=Physo157303;Parent=Physo157303;rank=3 scaffold_41 . exon 53173 53371 . + . ID=Physo157303.3;Parent=Physo157303;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_41 . CDS 53447 54004 . + 0 ID=Physo157303;Parent=Physo157303;rank=4 scaffold_41 . exon 53447 54004 . + . ID=Physo157303.4;Parent=Physo157303;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 54386 54607 . + 0 ID=Physo157303;Parent=Physo157303;rank=5 scaffold_41 . exon 54386 54607 . + . ID=Physo157303.5;Parent=Physo157303;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_41 . CDS 54668 54897 . + 0 ID=Physo157303;Parent=Physo157303;rank=6 scaffold_41 . exon 54668 54897 . + . ID=Physo157303.6;Parent=Physo157303;constitutive=1;ensembl_phase=1;rank=6 scaffold_41 . CDS 55132 55312 . + 0 ID=Physo157303;Parent=Physo157303;rank=7 scaffold_41 . exon 55132 55312 . + . ID=Physo157303.7;Parent=Physo157303;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_41 . CDS 55364 56124 . + 0 ID=Physo157303;Parent=Physo157303;rank=8 scaffold_41 . exon 55364 56124 . + . ID=Physo157303.8;Parent=Physo157303;constitutive=1;ensembl_phase=1;rank=8 scaffold_41 . CDS 56601 57444 . + 0 ID=Physo157303;Parent=Physo157303;rank=9 scaffold_41 . exon 56601 57444 . + . ID=Physo157303.9;Parent=Physo157303;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_41 . CDS 57700 57875 . + 0 ID=Physo157303;Parent=Physo157303;rank=10 scaffold_41 . exon 57700 57875 . + . ID=Physo157303.10;Parent=Physo157303;constitutive=1;ensembl_phase=1;rank=10 scaffold_41 . CDS 57942 58009 . + 0 ID=Physo157303;Parent=Physo157303;rank=11 scaffold_41 . exon 57942 58009 . + . ID=Physo157303.11;Parent=Physo157303;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_41 . CDS 58088 58228 . + 0 ID=Physo157303;Parent=Physo157303;rank=12 scaffold_41 . exon 58088 58228 . + . ID=Physo157303.12;Parent=Physo157303;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_41 . CDS 58325 58583 . + 0 ID=Physo157303;Parent=Physo157303;rank=13 scaffold_41 . exon 58325 58583 . + . ID=Physo157303.13;Parent=Physo157303;constitutive=1;ensembl_phase=2;rank=13 scaffold_41 . CDS 58668 58719 . + 0 ID=Physo157303;Parent=Physo157303;rank=14 scaffold_41 . exon 58668 58719 . + . ID=Physo157303.14;Parent=Physo157303;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_41 . CDS 58777 59140 . + 0 ID=Physo157303;Parent=Physo157303;rank=15 scaffold_41 . exon 58777 59140 . + . ID=Physo157303.15;Parent=Physo157303;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=15 scaffold_41 . CDS 59378 59649 . + 0 ID=Physo157303;Parent=Physo157303;rank=16 scaffold_41 . CDS 59740 59780 . + 0 ID=Physo157303;Parent=Physo157303;rank=17 scaffold_41 . repeat_region 60354 60371 . ? . description=dust scaffold_41 ensembl protein_coding_gene 60945 61870 . + . ID=Physo135817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410008;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 60945 61870 . + . ID=Physo135817;Parent=Physo135817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 60945 61171 . + 0 ID=Physo135817;Parent=Physo135817;rank=1 scaffold_41 . exon 60945 61171 . + . ID=Physo135817.1;Parent=Physo135817;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 61285 61870 . + 0 ID=Physo135817;Parent=Physo135817;rank=2 scaffold_41 . exon 61285 61870 . + . ID=Physo135817.2;Parent=Physo135817;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 ensembl protein_coding_gene 62461 63438 . + . ID=Physo135818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410009;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 62461 63438 . + . ID=Physo135818;Parent=Physo135818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 62461 63438 . + 0 ID=Physo135818;Parent=Physo135818;rank=1 scaffold_41 . exon 62461 63438 . + . ID=Physo135818.1;Parent=Physo135818;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 63587 64555 . + . ID=Physo135819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410010;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 63587 64555 . + . ID=Physo135819;Parent=Physo135819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 63587 64555 . + 0 ID=Physo135819;Parent=Physo135819;rank=1 scaffold_41 . exon 63587 64555 . + . ID=Physo135819.1;Parent=Physo135819;constitutive=1;rank=1 scaffold_41 . exon 59378 59649 . + . ID=Physo157303.16;Parent=Physo157303;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=16 scaffold_41 . exon 59740 59780 . + . ID=Physo157303.17;Parent=Physo157303;constitutive=1;ensembl_phase=1;rank=17 scaffold_41 ensembl protein_coding_gene 72494 74892 . - . ID=Physo135820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410011;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 72494 74892 . - . ID=Physo135820;Parent=Physo135820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 72494 72655 . - 0 ID=Physo135820;Parent=Physo135820;rank=3 scaffold_41 . exon 72494 72655 . - . ID=Physo135820.3;Parent=Physo135820;constitutive=1;rank=3 scaffold_41 . CDS 73054 73658 . - 0 ID=Physo135820;Parent=Physo135820;rank=2 scaffold_41 . exon 73054 73658 . - . ID=Physo135820.2;Parent=Physo135820;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 73875 74892 . - 0 ID=Physo135820;Parent=Physo135820;rank=1 scaffold_41 . exon 73875 74892 . - . ID=Physo135820.1;Parent=Physo135820;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 78692 81049 . - . ID=Physo135822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410013;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 78692 81049 . - . ID=Physo135822;Parent=Physo135822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 78692 81049 . - 0 ID=Physo135822;Parent=Physo135822;rank=1 scaffold_41 . exon 78692 81049 . - . ID=Physo135822.1;Parent=Physo135822;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 75399 75808 . + . ID=Physo157305;biotype=protein_coding;external_name=C_scaffold_41000007;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 75399 75808 . + . ID=Physo157305;Parent=Physo157305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 75399 75506 . + 0 ID=Physo157305;Parent=Physo157305;rank=1 scaffold_41 . exon 75399 75506 . + . ID=Physo157305.1;Parent=Physo157305;constitutive=1;rank=1 scaffold_41 . CDS 75542 75808 . + 0 ID=Physo157305;Parent=Physo157305;rank=2 scaffold_41 . exon 75542 75808 . + . ID=Physo157305.2;Parent=Physo157305;constitutive=1;rank=2 scaffold_41 ensembl protein_coding_gene 76438 77807 . + . ID=Physo157306;biotype=protein_coding;external_name=C_scaffold_41000008;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 76438 77807 . + . ID=Physo157306;Parent=Physo157306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 76438 76637 . + 0 ID=Physo157306;Parent=Physo157306;rank=1 scaffold_41 . exon 76438 76637 . + . ID=Physo157306.1;Parent=Physo157306;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 76735 76935 . + 0 ID=Physo157306;Parent=Physo157306;rank=2 scaffold_41 . exon 76735 76935 . + . ID=Physo157306.2;Parent=Physo157306;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_41 . CDS 77062 77253 . + 0 ID=Physo157306;Parent=Physo157306;rank=3 scaffold_41 . exon 77062 77253 . + . ID=Physo157306.3;Parent=Physo157306;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_41 . CDS 77311 77432 . + 0 ID=Physo157306;Parent=Physo157306;rank=4 scaffold_41 . exon 77311 77432 . + . ID=Physo157306.4;Parent=Physo157306;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 77538 77807 . + 0 ID=Physo157306;Parent=Physo157306;rank=5 scaffold_41 . exon 77538 77807 . + . ID=Physo157306.5;Parent=Physo157306;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_41 . biological_region 80650 80654 0.999 - . logic_name=eponine scaffold_41 . biological_region 80690 80695 0.999 + . logic_name=eponine scaffold_41 . repeat_region 85727 85735 . ? . description=dust scaffold_41 . repeat_region 85770 85777 . ? . description=dust scaffold_41 . repeat_region 86861 86911 . ? . description=trf scaffold_41 . repeat_region 86861 86924 . ? . description=dust scaffold_41 . repeat_region 86863 86911 . ? . description=trf scaffold_41 . biological_region 87141 87143 0.999 + . logic_name=eponine scaffold_41 . repeat_region 87766 87778 . ? . description=dust scaffold_41 ensembl protein_coding_gene 86539 87250 . - . ID=Physo135823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410014;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 86539 87250 . - . ID=Physo135823;Parent=Physo135823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 86539 86561 . - 0 ID=Physo135823;Parent=Physo135823;rank=2 scaffold_41 . exon 86539 86561 . - . ID=Physo135823.2;Parent=Physo135823;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 86596 87250 . - 0 ID=Physo135823;Parent=Physo135823;rank=1 scaffold_41 . exon 86596 87250 . - . ID=Physo135823.1;Parent=Physo135823;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 94756 95553 . + . ID=Physo135824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410015;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 94756 95553 . + . ID=Physo135824;Parent=Physo135824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 94756 95553 . + 0 ID=Physo135824;Parent=Physo135824;rank=1 scaffold_41 . exon 94756 95553 . + . ID=Physo135824.1;Parent=Physo135824;constitutive=1;rank=1 scaffold_41 . repeat_region 106168 106175 . ? . description=dust scaffold_41 . repeat_region 108250 108257 . ? . description=dust scaffold_41 . biological_region 115882 115883 0.999 + . logic_name=eponine scaffold_41 . biological_region 115932 115934 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 114589 116045 . - . ID=Physo135825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410016;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 114589 116045 . - . ID=Physo135825;Parent=Physo135825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 114589 114601 . - 0 ID=Physo135825;Parent=Physo135825;rank=2 scaffold_41 . exon 114589 114601 . - . ID=Physo135825.2;Parent=Physo135825;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 114637 116045 . - 0 ID=Physo135825;Parent=Physo135825;rank=1 scaffold_41 . exon 114637 116045 . - . ID=Physo135825.1;Parent=Physo135825;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 ensembl protein_coding_gene 116183 117874 . + . ID=Physo135826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410017;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 116183 117874 . + . ID=Physo135826;Parent=Physo135826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 116183 117305 . + . ID=Physo135826.1;Parent=Physo135826;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_41 . CDS 116191 117305 . + 0 ID=Physo135826;Parent=Physo135826;rank=1 scaffold_41 . CDS 117573 117770 . + 0 ID=Physo135826;Parent=Physo135826;rank=2 scaffold_41 . exon 117573 117770 . + . ID=Physo135826.2;Parent=Physo135826;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_41 . CDS 117835 117874 . + 0 ID=Physo135826;Parent=Physo135826;rank=3 scaffold_41 . exon 117835 117874 . + . ID=Physo135826.3;Parent=Physo135826;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . repeat_region 124713 124726 . ? . description=dust scaffold_41 . repeat_region 125525 125532 . ? . description=dust scaffold_41 ensembl protein_coding_gene 126929 128347 . + . ID=Physo135827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410018;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 126929 128347 . + . ID=Physo135827;Parent=Physo135827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 126929 128347 . + 0 ID=Physo135827;Parent=Physo135827;rank=1 scaffold_41 . exon 126929 128347 . + . ID=Physo135827.1;Parent=Physo135827;constitutive=1;rank=1 scaffold_41 . repeat_region 129171 129198 . ? . description=trf scaffold_41 . biological_region 129286 129288 0.999 - . logic_name=eponine scaffold_41 . biological_region 134309 134312 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 129054 136217 . + . ID=Physo135828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410019;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 129054 136217 . + . ID=Physo135828;Parent=Physo135828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 129054 132924 . + 0 ID=Physo135828;Parent=Physo135828;rank=1 scaffold_41 . exon 129054 132924 . + . ID=Physo135828.1;Parent=Physo135828;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 133216 134755 . + 0 ID=Physo135828;Parent=Physo135828;rank=2 scaffold_41 . exon 133216 134755 . + . ID=Physo135828.2;Parent=Physo135828;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_41 . CDS 134960 136217 . + 0 ID=Physo135828;Parent=Physo135828;rank=3 scaffold_41 . exon 134960 136217 . + . ID=Physo135828.3;Parent=Physo135828;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 ensembl protein_coding_gene 138225 140389 . + . ID=Physo135829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410020;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 138225 140389 . + . ID=Physo135829;Parent=Physo135829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 138225 138672 . + 0 ID=Physo135829;Parent=Physo135829;rank=1 scaffold_41 . exon 138225 138672 . + . ID=Physo135829.1;Parent=Physo135829;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 138836 139167 . + 0 ID=Physo135829;Parent=Physo135829;rank=2 scaffold_41 . CDS 139271 139460 . + 0 ID=Physo135829;Parent=Physo135829;rank=3 scaffold_41 . CDS 139562 140045 . + 0 ID=Physo135829;Parent=Physo135829;rank=4 scaffold_41 . CDS 140120 140285 . + 0 ID=Physo135829;Parent=Physo135829;rank=5 scaffold_41 . CDS 140327 140389 . + 0 ID=Physo135829;Parent=Physo135829;rank=6 scaffold_41 . repeat_region 146664 146825 . + . description=(CGAT)n scaffold_41 . repeat_region 146717 146780 . ? . description=dust scaffold_41 . exon 138836 139167 . + . ID=Physo135829.2;Parent=Physo135829;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . exon 139271 139460 . + . ID=Physo135829.3;Parent=Physo135829;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_41 . exon 139562 140045 . + . ID=Physo135829.4;Parent=Physo135829;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_41 . exon 140120 140285 . + . ID=Physo135829.5;Parent=Physo135829;constitutive=1;ensembl_phase=2;rank=5 scaffold_41 . exon 140327 140389 . + . ID=Physo135829.6;Parent=Physo135829;constitutive=1;rank=6 scaffold_41 ensembl protein_coding_gene 141508 146166 . + . ID=Physo135830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410021;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 141508 146166 . + . ID=Physo135830;Parent=Physo135830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 141508 141826 . + 0 ID=Physo135830;Parent=Physo135830;rank=1 scaffold_41 . exon 141508 141826 . + . ID=Physo135830.1;Parent=Physo135830;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 142034 142484 . + 0 ID=Physo135830;Parent=Physo135830;rank=2 scaffold_41 . exon 142034 142484 . + . ID=Physo135830.2;Parent=Physo135830;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_41 . CDS 142578 142758 . + 0 ID=Physo135830;Parent=Physo135830;rank=3 scaffold_41 . exon 142578 142758 . + . ID=Physo135830.3;Parent=Physo135830;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 142861 143039 . + 0 ID=Physo135830;Parent=Physo135830;rank=4 scaffold_41 . exon 142861 143039 . + . ID=Physo135830.4;Parent=Physo135830;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_41 . CDS 143948 145547 . + 0 ID=Physo135830;Parent=Physo135830;rank=5 scaffold_41 . exon 143948 145547 . + . ID=Physo135830.5;Parent=Physo135830;constitutive=1;ensembl_phase=2;rank=5 scaffold_41 . CDS 145567 146166 . + 0 ID=Physo135830;Parent=Physo135830;rank=6 scaffold_41 . exon 145567 146166 . + . ID=Physo135830.6;Parent=Physo135830;constitutive=1;rank=6 scaffold_41 ensembl protein_coding_gene 147550 148920 . + . ID=Physo135831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410022;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 147550 148920 . + . ID=Physo135831;Parent=Physo135831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 147550 147592 . + 0 ID=Physo135831;Parent=Physo135831;rank=1 scaffold_41 . exon 147550 147592 . + . ID=Physo135831.1;Parent=Physo135831;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 147784 147811 . + 0 ID=Physo135831;Parent=Physo135831;rank=2 scaffold_41 . exon 147784 147811 . + . ID=Physo135831.2;Parent=Physo135831;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_41 . CDS 147888 148920 . + 0 ID=Physo135831;Parent=Physo135831;rank=3 scaffold_41 . exon 147888 148920 . + . ID=Physo135831.3;Parent=Physo135831;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . biological_region 153698 153704 0.999 - . logic_name=eponine scaffold_41 . biological_region 153858 153858 0.999 + . logic_name=eponine scaffold_41 . repeat_region 154950 155005 . ? . description=trf scaffold_41 . biological_region 155623 155629 0.999 + . logic_name=eponine scaffold_41 . repeat_region 155641 155754 . ? . description=trf scaffold_41 . repeat_region 155666 155747 . ? . description=trf scaffold_41 . biological_region 155686 155687 0.999 + . logic_name=eponine scaffold_41 . biological_region 157214 157221 0.999 - . logic_name=eponine scaffold_41 . biological_region 157749 157752 0.999 + . logic_name=eponine scaffold_41 . biological_region 157935 157940 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 156735 158280 . - . ID=Physo135832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410023;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 156735 158280 . - . ID=Physo135832;Parent=Physo135832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 156735 156796 . - 0 ID=Physo135832;Parent=Physo135832;rank=4 scaffold_41 . exon 156735 156796 . - . ID=Physo135832.4;Parent=Physo135832;constitutive=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 156820 157501 . - 0 ID=Physo135832;Parent=Physo135832;rank=3 scaffold_41 . exon 156820 157501 . - . ID=Physo135832.3;Parent=Physo135832;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_41 . CDS 157583 158197 . - 0 ID=Physo135832;Parent=Physo135832;rank=2 scaffold_41 . exon 157583 158197 . - . ID=Physo135832.2;Parent=Physo135832;constitutive=1;rank=2 scaffold_41 . CDS 158227 158280 . - 0 ID=Physo135832;Parent=Physo135832;rank=1 scaffold_41 . repeat_region 164234 164241 . ? . description=dust scaffold_41 . repeat_region 167543 167550 . ? . description=dust scaffold_41 . exon 158227 158280 . - . ID=Physo135832.1;Parent=Physo135832;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 158869 159966 . + . ID=Physo135833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410024;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 158869 159966 . + . ID=Physo135833;Parent=Physo135833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 158869 159675 . + 0 ID=Physo135833;Parent=Physo135833;rank=1 scaffold_41 . exon 158869 159966 . + . ID=Physo135833.1;Parent=Physo135833;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_41 ensembl protein_coding_gene 161612 163174 . + . ID=Physo135834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410025;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 161612 163174 . + . ID=Physo135834;Parent=Physo135834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 161612 161719 . + 0 ID=Physo135834;Parent=Physo135834;rank=1 scaffold_41 . exon 161612 161719 . + . ID=Physo135834.1;Parent=Physo135834;constitutive=1;rank=1 scaffold_41 . CDS 161798 161840 . + 0 ID=Physo135834;Parent=Physo135834;rank=2 scaffold_41 . exon 161798 161840 . + . ID=Physo135834.2;Parent=Physo135834;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 161909 162206 . + 0 ID=Physo135834;Parent=Physo135834;rank=3 scaffold_41 . exon 161909 162206 . + . ID=Physo135834.3;Parent=Physo135834;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_41 . CDS 162362 162869 . + 0 ID=Physo135834;Parent=Physo135834;rank=4 scaffold_41 . exon 162362 162869 . + . ID=Physo135834.4;Parent=Physo135834;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 162951 163086 . + 0 ID=Physo135834;Parent=Physo135834;rank=5 scaffold_41 . exon 162951 163086 . + . ID=Physo135834.5;Parent=Physo135834;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_41 . CDS 163158 163174 . + 0 ID=Physo135834;Parent=Physo135834;rank=6 scaffold_41 . exon 163158 163174 . + . ID=Physo135834.6;Parent=Physo135834;constitutive=1;ensembl_phase=1;rank=6 scaffold_41 ensembl protein_coding_gene 164431 165084 . - . ID=Physo135835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410026;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 164431 165084 . - . ID=Physo135835;Parent=Physo135835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 164431 165084 . - 0 ID=Physo135835;Parent=Physo135835;rank=1 scaffold_41 . exon 164431 165084 . - . ID=Physo135835.1;Parent=Physo135835;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 165764 166195 . + . ID=Physo135836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410027;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 165764 166195 . + . ID=Physo135836;Parent=Physo135836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 165764 166195 . + 0 ID=Physo135836;Parent=Physo135836;rank=1 scaffold_41 . exon 165764 166195 . + . ID=Physo135836.1;Parent=Physo135836;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 166700 167353 . + . ID=Physo135837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410028;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 166700 167353 . + . ID=Physo135837;Parent=Physo135837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 166700 167353 . + 0 ID=Physo135837;Parent=Physo135837;rank=1 scaffold_41 . exon 166700 167353 . + . ID=Physo135837.1;Parent=Physo135837;constitutive=1;rank=1 scaffold_41 . biological_region 169718 169719 0.999 + . logic_name=eponine scaffold_41 . repeat_region 170996 171020 . ? . description=trf scaffold_41 . repeat_region 173402 173453 . ? . description=trf scaffold_41 . repeat_region 175607 175660 . ? . description=trf scaffold_41 . repeat_region 176514 176554 . ? . description=trf scaffold_41 . biological_region 176568 176570 0.999 + . logic_name=eponine scaffold_41 . biological_region 176617 176621 0.999 + . logic_name=eponine scaffold_41 . biological_region 176638 176639 0.999 - . logic_name=eponine scaffold_41 . biological_region 176662 176664 0.999 - . logic_name=eponine scaffold_41 . biological_region 176693 176695 0.999 + . logic_name=eponine scaffold_41 . biological_region 177241 177241 0.999 + . logic_name=eponine scaffold_41 . biological_region 177302 177308 0.999 + . logic_name=eponine scaffold_41 . biological_region 177322 177327 0.999 + . logic_name=eponine scaffold_41 . biological_region 177385 177388 0.999 + . logic_name=eponine scaffold_41 . biological_region 177430 177435 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 174998 175804 . + . ID=Physo135838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410029;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 174998 175804 . + . ID=Physo135838;Parent=Physo135838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 174998 175804 . + 0 ID=Physo135838;Parent=Physo135838;rank=1 scaffold_41 . exon 174998 175804 . + . ID=Physo135838.1;Parent=Physo135838;constitutive=1;rank=1 scaffold_41 . repeat_region 187720 187727 . ? . description=dust scaffold_41 ensembl protein_coding_gene 184100 185692 . + . ID=Physo108902;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_410001;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 184100 185692 . + . ID=Physo108902;Parent=Physo108902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 184100 185692 . + 0 ID=Physo108902;Parent=Physo108902;rank=1 scaffold_41 . exon 184100 185692 . + . ID=Physo108902.1;Parent=Physo108902;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 186587 187267 . - . ID=Physo135840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410031;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 186587 187267 . - . ID=Physo135840;Parent=Physo135840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 186587 187267 . - 0 ID=Physo135840;Parent=Physo135840;rank=1 scaffold_41 . exon 186587 187267 . - . ID=Physo135840.1;Parent=Physo135840;constitutive=1;rank=1 scaffold_41 . repeat_region 190463 190484 . ? . description=trf scaffold_41 . repeat_region 192465 192486 . ? . description=trf scaffold_41 . repeat_region 192465 192498 . ? . description=trf scaffold_41 . biological_region 195928 195931 0.999 + . logic_name=eponine scaffold_41 . repeat_region 196688 196708 . ? . description=trf scaffold_41 . biological_region 197662 197662 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 190402 190869 . - . ID=Physo135841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410032;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 190402 190869 . - . ID=Physo135841;Parent=Physo135841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 190402 190869 . - 0 ID=Physo135841;Parent=Physo135841;rank=1 scaffold_41 . exon 190402 190869 . - . ID=Physo135841.1;Parent=Physo135841;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 190979 191641 . + . ID=Physo135842;biotype=protein_coding;description=PsAvh338 [Source:UniProtKB/TrEMBL%3BAcc:E0W557];external_name=estExt_fgenesh1_pg.C_410033;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 190979 191641 . + . ID=Physo135842;Parent=Physo135842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 190979 191641 . + . ID=Physo135842.1;Parent=Physo135842;constitutive=1;ensembl_phase=-1;rank=1 scaffold_41 . CDS 191255 191641 . + 0 ID=Physo135842;Parent=Physo135842;rank=1 scaffold_41 ensembl protein_coding_gene 192080 192547 . + . ID=Physo135843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410034;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 192080 192547 . + . ID=Physo135843;Parent=Physo135843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 192080 192547 . + 0 ID=Physo135843;Parent=Physo135843;rank=1 scaffold_41 . exon 192080 192547 . + . ID=Physo135843.1;Parent=Physo135843;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 192785 195653 . + . ID=Physo135844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410035;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 192785 195653 . + . ID=Physo135844;Parent=Physo135844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 192785 193067 . + 0 ID=Physo135844;Parent=Physo135844;rank=1 scaffold_41 . exon 192785 193067 . + . ID=Physo135844.1;Parent=Physo135844;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 193135 193201 . + 0 ID=Physo135844;Parent=Physo135844;rank=2 scaffold_41 . exon 193135 193201 . + . ID=Physo135844.2;Parent=Physo135844;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_41 . CDS 193268 195653 . + 0 ID=Physo135844;Parent=Physo135844;rank=3 scaffold_41 . exon 193268 195653 . + . ID=Physo135844.3;Parent=Physo135844;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 ensembl protein_coding_gene 195711 196969 . - . ID=Physo135845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410036;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 195711 196969 . - . ID=Physo135845;Parent=Physo135845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 195711 196212 . - . ID=Physo135845.3;Parent=Physo135845;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_41 . CDS 195868 196212 . - 0 ID=Physo135845;Parent=Physo135845;rank=3 scaffold_41 . CDS 196659 196838 . - 0 ID=Physo135845;Parent=Physo135845;rank=2 scaffold_41 . exon 196659 196838 . - . ID=Physo135845.2;Parent=Physo135845;constitutive=1;rank=2 scaffold_41 . CDS 196947 196952 . - 0 ID=Physo135845;Parent=Physo135845;rank=1 scaffold_41 . exon 196947 196969 . - . ID=Physo135845.1;Parent=Physo135845;constitutive=1;ensembl_phase=-1;rank=1 scaffold_41 ensembl protein_coding_gene 197492 199323 . + . ID=Physo135846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410037;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 197492 199323 . + . ID=Physo135846;Parent=Physo135846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 197492 198133 . + 0 ID=Physo135846;Parent=Physo135846;rank=1 scaffold_41 . exon 197492 198133 . + . ID=Physo135846.1;Parent=Physo135846;constitutive=1;rank=1 scaffold_41 . CDS 198171 198773 . + 0 ID=Physo135846;Parent=Physo135846;rank=2 scaffold_41 . repeat_region 202730 202739 . ? . description=dust scaffold_41 . exon 198171 199323 . + . ID=Physo135846.2;Parent=Physo135846;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_41 ensembl protein_coding_gene 199412 199834 . - . ID=Physo135847;biotype=protein_coding;description=PsAvh242 [Source:UniProtKB/TrEMBL%3BAcc:E0W558];external_name=estExt_fgenesh1_pg.C_410038;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 199412 199834 . - . ID=Physo135847;Parent=Physo135847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 199412 199834 . - 0 ID=Physo135847;Parent=Physo135847;rank=1 scaffold_41 . exon 199412 199834 . - . ID=Physo135847.1;Parent=Physo135847;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 200644 201309 . - . ID=Physo135848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410039;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 200644 201309 . - . ID=Physo135848;Parent=Physo135848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 200644 201309 . - 0 ID=Physo135848;Parent=Physo135848;rank=1 scaffold_41 . exon 200644 201309 . - . ID=Physo135848.1;Parent=Physo135848;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 202823 203281 . - . ID=Physo135849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410040;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 202823 203281 . - . ID=Physo135849;Parent=Physo135849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 202823 203281 . - 0 ID=Physo135849;Parent=Physo135849;rank=1 scaffold_41 . exon 202823 203281 . - . ID=Physo135849.1;Parent=Physo135849;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 203435 205280 . - . ID=Physo135850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410041;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 203435 205280 . - . ID=Physo135850;Parent=Physo135850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 203435 205280 . - . ID=Physo135850.1;Parent=Physo135850;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_41 . CDS 203544 205280 . - 0 ID=Physo135850;Parent=Physo135850;rank=1 scaffold_41 ensembl protein_coding_gene 205823 207709 . - . ID=Physo157307;biotype=protein_coding;external_name=C_scaffold_41000009;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 205823 207709 . - . ID=Physo157307;Parent=Physo157307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 205823 206572 . - 0 ID=Physo157307;Parent=Physo157307;rank=2 scaffold_41 . exon 205823 206572 . - . ID=Physo157307.2;Parent=Physo157307;constitutive=1;rank=2 scaffold_41 . CDS 206717 207709 . - 0 ID=Physo157307;Parent=Physo157307;rank=1 scaffold_41 . exon 206717 207709 . - . ID=Physo157307.1;Parent=Physo157307;constitutive=1;rank=1 scaffold_41 . repeat_region 207622 207655 . ? . description=trf scaffold_41 . biological_region 209249 209251 0.999 + . logic_name=eponine scaffold_41 . biological_region 209271 209274 0.999 + . logic_name=eponine scaffold_41 . repeat_region 212286 212307 . ? . description=trf scaffold_41 . biological_region 212410 212417 0.999 + . logic_name=eponine scaffold_41 . biological_region 212470 212475 0.999 - . logic_name=eponine scaffold_41 . biological_region 212636 212638 0.999 - . logic_name=eponine scaffold_41 . biological_region 213780 213784 0.999 + . logic_name=eponine scaffold_41 . biological_region 216629 216631 0.999 - . logic_name=eponine scaffold_41 . biological_region 216824 216825 0.999 + . logic_name=eponine scaffold_41 . biological_region 216995 217001 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 210547 211562 . - . ID=Physo135852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410043;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 210547 211562 . - . ID=Physo135852;Parent=Physo135852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 210547 211386 . - 0 ID=Physo135852;Parent=Physo135852;rank=2 scaffold_41 . exon 210547 211386 . - . ID=Physo135852.2;Parent=Physo135852;constitutive=1;rank=2 scaffold_41 . CDS 211464 211562 . - 0 ID=Physo135852;Parent=Physo135852;rank=1 scaffold_41 . exon 211464 211562 . - . ID=Physo135852.1;Parent=Physo135852;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 212447 217121 . + . ID=Physo135853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410044;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 212447 217121 . + . ID=Physo135853;Parent=Physo135853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 212447 215973 . + 0 ID=Physo135853;Parent=Physo135853;rank=1 scaffold_41 . exon 212447 215973 . + . ID=Physo135853.1;Parent=Physo135853;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 216047 217121 . + 0 ID=Physo135853;Parent=Physo135853;rank=2 scaffold_41 . exon 216047 217121 . + . ID=Physo135853.2;Parent=Physo135853;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . repeat_region 220305 220339 . ? . description=dust scaffold_41 . repeat_region 225875 225882 . ? . description=dust scaffold_41 . repeat_region 226588 226613 . ? . description=dust scaffold_41 ensembl protein_coding_gene 219904 223220 . - . ID=Physo135854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410045;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 219904 223220 . - . ID=Physo135854;Parent=Physo135854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 219904 219918 . - 0 ID=Physo135854;Parent=Physo135854;rank=2 scaffold_41 . exon 219904 219918 . - . ID=Physo135854.2;Parent=Physo135854;constitutive=1;rank=2 scaffold_41 . CDS 220353 223220 . - 0 ID=Physo135854;Parent=Physo135854;rank=1 scaffold_41 . exon 220353 223220 . - . ID=Physo135854.1;Parent=Physo135854;constitutive=1;rank=1 scaffold_41 . repeat_region 230227 230277 . ? . description=trf scaffold_41 . repeat_region 230269 230315 . ? . description=trf scaffold_41 . repeat_region 230269 230324 . ? . description=trf scaffold_41 . repeat_region 230271 230348 . ? . description=trf scaffold_41 . repeat_region 230330 230441 . ? . description=trf scaffold_41 . biological_region 230634 230637 0.999 + . logic_name=eponine scaffold_41 . biological_region 230663 230663 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 238058 238761 . + . ID=Physo135855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410046;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 238058 238761 . + . ID=Physo135855;Parent=Physo135855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 238058 238227 . + 0 ID=Physo135855;Parent=Physo135855;rank=1 scaffold_41 . exon 238058 238227 . + . ID=Physo135855.1;Parent=Physo135855;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 238380 238761 . + 0 ID=Physo135855;Parent=Physo135855;rank=2 scaffold_41 . exon 238380 238761 . + . ID=Physo135855.2;Parent=Physo135855;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 ensembl protein_coding_gene 240966 242369 . + . ID=Physo135856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410047;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 240966 242369 . + . ID=Physo135856;Parent=Physo135856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 240966 242369 . + 0 ID=Physo135856;Parent=Physo135856;rank=1 scaffold_41 . exon 240966 242369 . + . ID=Physo135856.1;Parent=Physo135856;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 244168 244670 . - . ID=Physo135857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410048;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 244168 244670 . - . ID=Physo135857;Parent=Physo135857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 244168 244623 . - 0 ID=Physo135857;Parent=Physo135857;rank=1 scaffold_41 . exon 244168 244670 . - . ID=Physo135857.1;Parent=Physo135857;constitutive=1;ensembl_phase=-1;rank=1 scaffold_41 ensembl protein_coding_gene 245364 247150 . - . ID=Physo135858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410049;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 245364 247150 . - . ID=Physo135858;Parent=Physo135858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 245364 245782 . - 0 ID=Physo135858;Parent=Physo135858;rank=6 scaffold_41 . exon 245364 245782 . - . ID=Physo135858.6;Parent=Physo135858;constitutive=1;ensembl_phase=1;rank=6 scaffold_41 . CDS 245862 246120 . - 0 ID=Physo135858;Parent=Physo135858;rank=5 scaffold_41 . exon 245862 246120 . - . ID=Physo135858.5;Parent=Physo135858;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_41 . CDS 246227 246243 . - 0 ID=Physo135858;Parent=Physo135858;rank=4 scaffold_41 . exon 246227 246243 . - . ID=Physo135858.4;Parent=Physo135858;constitutive=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 246264 246392 . - 0 ID=Physo135858;Parent=Physo135858;rank=3 scaffold_41 . exon 246264 246392 . - . ID=Physo135858.3;Parent=Physo135858;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 246441 246730 . - 0 ID=Physo135858;Parent=Physo135858;rank=2 scaffold_41 . exon 246441 246730 . - . ID=Physo135858.2;Parent=Physo135858;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 246792 247150 . - 0 ID=Physo135858;Parent=Physo135858;rank=1 scaffold_41 . exon 246792 247150 . - . ID=Physo135858.1;Parent=Physo135858;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . biological_region 247978 247981 0.999 + . logic_name=eponine scaffold_41 . repeat_region 250895 250931 . ? . description=trf scaffold_41 . repeat_region 252182 252190 . ? . description=dust scaffold_41 . repeat_region 253005 253451 . ? . description=dust scaffold_41 . repeat_region 253571 253607 . ? . description=trf scaffold_41 . repeat_region 254858 254866 . ? . description=dust scaffold_41 . biological_region 255958 255960 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 247574 248218 . + . ID=Physo135859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410050;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 247574 248218 . + . ID=Physo135859;Parent=Physo135859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 247574 248218 . + 0 ID=Physo135859;Parent=Physo135859;rank=1 scaffold_41 . exon 247574 248218 . + . ID=Physo135859.1;Parent=Physo135859;constitutive=1;rank=1 scaffold_41 . repeat_region 261928 262094 . + . description=Polinton-1_PI scaffold_41 ensembl protein_coding_gene 259169 259842 . + . ID=Physo135861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410052;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 259169 259842 . + . ID=Physo135861;Parent=Physo135861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 259169 259358 . + . ID=Physo135861.1;Parent=Physo135861;constitutive=1;ensembl_phase=-1;rank=1 scaffold_41 . CDS 259191 259358 . + 0 ID=Physo135861;Parent=Physo135861;rank=1 scaffold_41 . CDS 259458 259517 . + 0 ID=Physo135861;Parent=Physo135861;rank=2 scaffold_41 . exon 259458 259517 . + . ID=Physo135861.2;Parent=Physo135861;constitutive=1;rank=2 scaffold_41 . CDS 259607 259741 . + 0 ID=Physo135861;Parent=Physo135861;rank=3 scaffold_41 . exon 259607 259842 . + . ID=Physo135861.3;Parent=Physo135861;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_41 ensembl protein_coding_gene 260005 261209 . - . ID=Physo135862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410053;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 260005 261209 . - . ID=Physo135862;Parent=Physo135862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 260005 260907 . - 0 ID=Physo135862;Parent=Physo135862;rank=2 scaffold_41 . exon 260005 260907 . - . ID=Physo135862.2;Parent=Physo135862;constitutive=1;rank=2 scaffold_41 . CDS 260997 261209 . - 0 ID=Physo135862;Parent=Physo135862;rank=1 scaffold_41 . exon 260997 261209 . - . ID=Physo135862.1;Parent=Physo135862;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 261936 262417 . + . ID=Physo135863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410054;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 261936 262417 . + . ID=Physo135863;Parent=Physo135863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 261936 262353 . + 0 ID=Physo135863;Parent=Physo135863;rank=1 scaffold_41 . exon 261936 262353 . + . ID=Physo135863.1;Parent=Physo135863;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 262401 262417 . + 0 ID=Physo135863;Parent=Physo135863;rank=2 scaffold_41 . exon 262401 262417 . + . ID=Physo135863.2;Parent=Physo135863;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 ensembl protein_coding_gene 258032 258461 . - . ID=Physo157309;biotype=protein_coding;external_name=C_scaffold_41000011;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 258032 258461 . - . ID=Physo157309;Parent=Physo157309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 258032 258214 . - 0 ID=Physo157309;Parent=Physo157309;rank=2 scaffold_41 . exon 258032 258214 . - . ID=Physo157309.2;Parent=Physo157309;constitutive=1;rank=2 scaffold_41 . CDS 258294 258461 . - 0 ID=Physo157309;Parent=Physo157309;rank=1 scaffold_41 . exon 258294 258461 . - . ID=Physo157309.1;Parent=Physo157309;constitutive=1;rank=1 scaffold_41 . repeat_region 264244 268912 . ? . description=dust scaffold_41 . biological_region 269030 269032 0.999 + . logic_name=eponine scaffold_41 . biological_region 269079 269081 0.999 - . logic_name=eponine scaffold_41 . biological_region 270368 270372 0.999 + . logic_name=eponine scaffold_41 . repeat_region 271170 271219 . ? . description=dust scaffold_41 . biological_region 271263 271265 0.999 + . logic_name=eponine scaffold_41 . biological_region 271313 271313 0.999 - . logic_name=eponine scaffold_41 . biological_region 272601 272605 0.999 + . logic_name=eponine scaffold_41 ensembl protein_coding_gene 268919 277334 . + . ID=Physo117362;biotype=protein_coding;external_name=estExt_Genewise1.C_410078;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 268919 277334 . + . ID=Physo117362;Parent=Physo117362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 268919 269439 . + . ID=Physo117362.1;Parent=Physo117362;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_41 . CDS 269027 269439 . + 0 ID=Physo117362;Parent=Physo117362;rank=1 scaffold_41 . CDS 271258 271306 . + 0 ID=Physo117362;Parent=Physo117362;rank=2 scaffold_41 . exon 271258 271306 . + . ID=Physo117362.2;Parent=Physo117362;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 271812 277334 . + 0 ID=Physo117362;Parent=Physo117362;rank=3 scaffold_41 . exon 271812 277334 . + . ID=Physo117362.3;Parent=Physo117362;constitutive=1;rank=3 scaffold_41 . repeat_region 277020 277046 . ? . description=trf scaffold_41 . repeat_region 277326 277357 . ? . description=trf scaffold_41 . repeat_region 279105 279132 . ? . description=trf scaffold_41 . repeat_region 286654 286692 . ? . description=trf scaffold_41 ensembl protein_coding_gene 277456 279063 . - . ID=Physo135865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410056;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 277456 279063 . - . ID=Physo135865;Parent=Physo135865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 277456 279063 . - 0 ID=Physo135865;Parent=Physo135865;rank=1 scaffold_41 . exon 277456 279063 . - . ID=Physo135865.1;Parent=Physo135865;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 279991 282279 . - . ID=Physo135866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410057;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 279991 282279 . - . ID=Physo135866;Parent=Physo135866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 279991 280052 . - 0 ID=Physo135866;Parent=Physo135866;rank=6 scaffold_41 . exon 279991 280052 . - . ID=Physo135866.6;Parent=Physo135866;constitutive=1;ensembl_phase=1;rank=6 scaffold_41 . CDS 280167 280320 . - 0 ID=Physo135866;Parent=Physo135866;rank=5 scaffold_41 . exon 280167 280320 . - . ID=Physo135866.5;Parent=Physo135866;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_41 . CDS 280401 280935 . - 0 ID=Physo135866;Parent=Physo135866;rank=4 scaffold_41 . exon 280401 280935 . - . ID=Physo135866.4;Parent=Physo135866;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 281011 281243 . - 0 ID=Physo135866;Parent=Physo135866;rank=3 scaffold_41 . exon 281011 281243 . - . ID=Physo135866.3;Parent=Physo135866;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 281315 281429 . - 0 ID=Physo135866;Parent=Physo135866;rank=2 scaffold_41 . exon 281315 281429 . - . ID=Physo135866.2;Parent=Physo135866;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 281507 282279 . - 0 ID=Physo135866;Parent=Physo135866;rank=1 scaffold_41 . exon 281507 282279 . - . ID=Physo135866.1;Parent=Physo135866;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 ensembl protein_coding_gene 282515 284669 . + . ID=Physo135867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410058;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 282515 284669 . + . ID=Physo135867;Parent=Physo135867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 282515 282615 . + 0 ID=Physo135867;Parent=Physo135867;rank=1 scaffold_41 . exon 282515 282615 . + . ID=Physo135867.1;Parent=Physo135867;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 282740 283506 . + 0 ID=Physo135867;Parent=Physo135867;rank=2 scaffold_41 . exon 282740 283506 . + . ID=Physo135867.2;Parent=Physo135867;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 283580 283781 . + 0 ID=Physo135867;Parent=Physo135867;rank=3 scaffold_41 . exon 283580 283781 . + . ID=Physo135867.3;Parent=Physo135867;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_41 . CDS 283853 284669 . + 0 ID=Physo135867;Parent=Physo135867;rank=4 scaffold_41 . exon 283853 284669 . + . ID=Physo135867.4;Parent=Physo135867;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 ensembl protein_coding_gene 284812 287100 . - . ID=Physo135868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410059;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 284812 287100 . - . ID=Physo135868;Parent=Physo135868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 284812 287100 . - 0 ID=Physo135868;Parent=Physo135868;rank=1 scaffold_41 . exon 284812 287100 . - . ID=Physo135868.1;Parent=Physo135868;constitutive=1;rank=1 scaffold_41 . biological_region 287154 287159 0.999 - . logic_name=eponine scaffold_41 . biological_region 287801 287805 0.999 - . logic_name=eponine scaffold_41 . repeat_region 289884 289944 . ? . description=dust scaffold_41 . biological_region 290163 290166 0.999 + . logic_name=eponine scaffold_41 . biological_region 291256 291258 0.999 + . logic_name=eponine scaffold_41 . biological_region 291380 291386 0.999 - . logic_name=eponine scaffold_41 . biological_region 293333 293337 0.999 - . logic_name=eponine scaffold_41 . biological_region 296377 296380 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 287458 289803 . - . ID=Physo135869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410060;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 287458 289803 . - . ID=Physo135869;Parent=Physo135869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 287458 289803 . - 0 ID=Physo135869;Parent=Physo135869;rank=1 scaffold_41 . exon 287458 289803 . - . ID=Physo135869.1;Parent=Physo135869;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 290133 291359 . - . ID=Physo135870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410061;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 290133 291359 . - . ID=Physo135870;Parent=Physo135870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 290133 291359 . - 0 ID=Physo135870;Parent=Physo135870;rank=1 scaffold_41 . exon 290133 291359 . - . ID=Physo135870.1;Parent=Physo135870;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 293009 295246 . + . ID=Physo135872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410063;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 293009 295246 . + . ID=Physo135872;Parent=Physo135872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 293009 295246 . + 0 ID=Physo135872;Parent=Physo135872;rank=1 scaffold_41 . exon 293009 295246 . + . ID=Physo135872.1;Parent=Physo135872;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 292160 292583 . - . ID=Physo157313;biotype=protein_coding;external_name=C_scaffold_41000015;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 292160 292583 . - . ID=Physo157313;Parent=Physo157313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 292160 292345 . - 0 ID=Physo157313;Parent=Physo157313;rank=3 scaffold_41 . exon 292160 292345 . - . ID=Physo157313.3;Parent=Physo157313;constitutive=1;rank=3 scaffold_41 . CDS 292426 292505 . - 0 ID=Physo157313;Parent=Physo157313;rank=2 scaffold_41 . exon 292426 292505 . - . ID=Physo157313.2;Parent=Physo157313;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 292547 292583 . - 0 ID=Physo157313;Parent=Physo157313;rank=1 scaffold_41 . exon 292547 292583 . - . ID=Physo157313.1;Parent=Physo157313;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . repeat_region 301270 301335 . ? . description=trf scaffold_41 . repeat_region 301280 301335 . ? . description=trf scaffold_41 . repeat_region 303684 303741 . ? . description=trf scaffold_41 ensembl protein_coding_gene 298450 300181 . - . ID=Physo135873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410064;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 298450 300181 . - . ID=Physo135873;Parent=Physo135873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 298450 298456 . - 0 ID=Physo135873;Parent=Physo135873;rank=6 scaffold_41 . exon 298450 298456 . - . ID=Physo135873.6;Parent=Physo135873;constitutive=1;ensembl_phase=2;rank=6 scaffold_41 . CDS 298516 298799 . - 0 ID=Physo135873;Parent=Physo135873;rank=5 scaffold_41 . exon 298516 298799 . - . ID=Physo135873.5;Parent=Physo135873;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_41 . CDS 298931 299209 . - 0 ID=Physo135873;Parent=Physo135873;rank=4 scaffold_41 . exon 298931 299209 . - . ID=Physo135873.4;Parent=Physo135873;constitutive=1;rank=4 scaffold_41 . CDS 299292 299468 . - 0 ID=Physo135873;Parent=Physo135873;rank=3 scaffold_41 . exon 299292 299468 . - . ID=Physo135873.3;Parent=Physo135873;constitutive=1;rank=3 scaffold_41 . CDS 299624 299904 . - 0 ID=Physo135873;Parent=Physo135873;rank=2 scaffold_41 . exon 299624 299904 . - . ID=Physo135873.2;Parent=Physo135873;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 299932 300010 . - 0 ID=Physo135873;Parent=Physo135873;rank=1 scaffold_41 . exon 299932 300181 . - . ID=Physo135873.1;Parent=Physo135873;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_41 . biological_region 306684 306686 0.999 + . logic_name=eponine scaffold_41 . biological_region 306843 306845 0.999 + . logic_name=eponine scaffold_41 . repeat_region 308571 308625 . ? . description=dust scaffold_41 . repeat_region 309349 309356 . ? . description=dust scaffold_41 . repeat_region 309403 309410 . ? . description=dust scaffold_41 . repeat_region 309626 309635 . ? . description=dust scaffold_41 . repeat_region 312124 312173 . ? . description=dust scaffold_41 . repeat_region 315528 315545 . ? . description=dust scaffold_41 . repeat_region 317475 317525 . ? . description=trf scaffold_41 . repeat_region 320473 320516 . ? . description=trf scaffold_41 . repeat_region 320524 320561 . ? . description=trf scaffold_41 . repeat_region 322933 322979 . ? . description=trf scaffold_41 ensembl protein_coding_gene 319106 319627 . - . ID=Physo135874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410065;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 319106 319627 . - . ID=Physo135874;Parent=Physo135874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 319106 319627 . - 0 ID=Physo135874;Parent=Physo135874;rank=1 scaffold_41 . exon 319106 319627 . - . ID=Physo135874.1;Parent=Physo135874;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 319733 320158 . + . ID=Physo135875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410066;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 319733 320158 . + . ID=Physo135875;Parent=Physo135875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 319733 320158 . + 0 ID=Physo135875;Parent=Physo135875;rank=1 scaffold_41 . exon 319733 320158 . + . ID=Physo135875.1;Parent=Physo135875;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 320332 320956 . - . ID=Physo135876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410067;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 320332 320956 . - . ID=Physo135876;Parent=Physo135876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 320332 320956 . - . ID=Physo135876.1;Parent=Physo135876;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_41 . CDS 320399 320956 . - 0 ID=Physo135876;Parent=Physo135876;rank=1 scaffold_41 ensembl protein_coding_gene 322428 324881 . + . ID=Physo135877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410068;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 322428 324881 . + . ID=Physo135877;Parent=Physo135877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 322428 324881 . + 0 ID=Physo135877;Parent=Physo135877;rank=1 scaffold_41 . exon 322428 324881 . + . ID=Physo135877.1;Parent=Physo135877;constitutive=1;rank=1 scaffold_41 . biological_region 326638 326638 0.999 - . logic_name=eponine scaffold_41 . repeat_region 328071 328111 . ? . description=dust scaffold_41 . repeat_region 331728 331736 . ? . description=dust scaffold_41 . repeat_region 333792 335621 . ? . description=dust scaffold_41 ensembl protein_coding_gene 326534 328374 . - . ID=Physo135878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410069;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 326534 328374 . - . ID=Physo135878;Parent=Physo135878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 326534 327387 . - 0 ID=Physo135878;Parent=Physo135878;rank=5 scaffold_41 . exon 326534 327387 . - . ID=Physo135878.5;Parent=Physo135878;constitutive=1;ensembl_phase=1;rank=5 scaffold_41 . CDS 327482 327718 . - 0 ID=Physo135878;Parent=Physo135878;rank=4 scaffold_41 . exon 327482 327718 . - . ID=Physo135878.4;Parent=Physo135878;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 327954 328040 . - 0 ID=Physo135878;Parent=Physo135878;rank=3 scaffold_41 . exon 327954 328040 . - . ID=Physo135878.3;Parent=Physo135878;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 328140 328219 . - 0 ID=Physo135878;Parent=Physo135878;rank=2 scaffold_41 . exon 328140 328219 . - . ID=Physo135878.2;Parent=Physo135878;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 328301 328374 . - 0 ID=Physo135878;Parent=Physo135878;rank=1 scaffold_41 . exon 328301 328374 . - . ID=Physo135878.1;Parent=Physo135878;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 ensembl protein_coding_gene 328509 329635 . + . ID=Physo135879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410070;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 328509 329635 . + . ID=Physo135879;Parent=Physo135879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 328509 328689 . + 0 ID=Physo135879;Parent=Physo135879;rank=1 scaffold_41 . exon 328509 328689 . + . ID=Physo135879.1;Parent=Physo135879;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 328764 328863 . + 0 ID=Physo135879;Parent=Physo135879;rank=2 scaffold_41 . exon 328764 328863 . + . ID=Physo135879.2;Parent=Physo135879;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_41 . CDS 328939 329232 . + 0 ID=Physo135879;Parent=Physo135879;rank=3 scaffold_41 . exon 328939 329232 . + . ID=Physo135879.3;Parent=Physo135879;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_41 . CDS 329300 329360 . + 0 ID=Physo135879;Parent=Physo135879;rank=4 scaffold_41 . exon 329300 329360 . + . ID=Physo135879.4;Parent=Physo135879;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 329618 329635 . + 0 ID=Physo135879;Parent=Physo135879;rank=5 scaffold_41 . exon 329618 329635 . + . ID=Physo135879.5;Parent=Physo135879;constitutive=1;rank=5 scaffold_41 ensembl protein_coding_gene 335965 337686 . - . ID=Physo135880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410071;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 335965 337686 . - . ID=Physo135880;Parent=Physo135880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 335965 337686 . - 0 ID=Physo135880;Parent=Physo135880;rank=1 scaffold_41 . exon 335965 337686 . - . ID=Physo135880.1;Parent=Physo135880;constitutive=1;rank=1 scaffold_41 . repeat_region 336661 336852 . ? . description=trf scaffold_41 . repeat_region 338025 338069 . ? . description=trf scaffold_41 . repeat_region 342561 342647 . ? . description=trf scaffold_41 . repeat_region 342863 342920 . ? . description=trf scaffold_41 ensembl protein_coding_gene 337973 338886 . + . ID=Physo135881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410072;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 337973 338886 . + . ID=Physo135881;Parent=Physo135881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 337973 338601 . + 0 ID=Physo135881;Parent=Physo135881;rank=1 scaffold_41 . exon 337973 338601 . + . ID=Physo135881.1;Parent=Physo135881;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 338681 338885 . + 0 ID=Physo135881;Parent=Physo135881;rank=2 scaffold_41 . exon 338681 338886 . + . ID=Physo135881.2;Parent=Physo135881;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_41 ensembl protein_coding_gene 340673 341602 . + . ID=Physo135882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410073;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 340673 341602 . + . ID=Physo135882;Parent=Physo135882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 340673 341602 . + 0 ID=Physo135882;Parent=Physo135882;rank=1 scaffold_41 . exon 340673 341602 . + . ID=Physo135882.1;Parent=Physo135882;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 342595 343003 . + . ID=Physo135883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410074;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 342595 343003 . + . ID=Physo135883;Parent=Physo135883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 342595 342738 . + 0 ID=Physo135883;Parent=Physo135883;rank=1 scaffold_41 . exon 342595 342738 . + . ID=Physo135883.1;Parent=Physo135883;constitutive=1;rank=1 scaffold_41 . CDS 342839 343003 . + 0 ID=Physo135883;Parent=Physo135883;rank=2 scaffold_41 . exon 342839 343003 . + . ID=Physo135883.2;Parent=Physo135883;constitutive=1;rank=2 scaffold_41 ensembl protein_coding_gene 344755 345753 . + . ID=Physo135884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410075;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 344755 345753 . + . ID=Physo135884;Parent=Physo135884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 344755 345753 . + 0 ID=Physo135884;Parent=Physo135884;rank=1 scaffold_41 . exon 344755 345753 . + . ID=Physo135884.1;Parent=Physo135884;constitutive=1;rank=1 scaffold_41 . biological_region 346319 346323 0.999 + . logic_name=eponine scaffold_41 . biological_region 348182 348184 0.999 - . logic_name=eponine scaffold_41 . biological_region 348189 348190 0.999 + . logic_name=eponine scaffold_41 . repeat_region 350707 350753 . ? . description=dust scaffold_41 ensembl protein_coding_gene 349189 349833 . + . ID=Physo135885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410076;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 349189 349833 . + . ID=Physo135885;Parent=Physo135885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 349189 349833 . + 0 ID=Physo135885;Parent=Physo135885;rank=1 scaffold_41 . exon 349189 349833 . + . ID=Physo135885.1;Parent=Physo135885;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 349864 350805 . - . ID=Physo135886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410077;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 349864 350805 . - . ID=Physo135886;Parent=Physo135886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 349864 350109 . - . ID=Physo135886.2;Parent=Physo135886;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_41 . CDS 349866 350109 . - 0 ID=Physo135886;Parent=Physo135886;rank=2 scaffold_41 . CDS 350189 350805 . - 0 ID=Physo135886;Parent=Physo135886;rank=1 scaffold_41 . exon 350189 350805 . - . ID=Physo135886.1;Parent=Physo135886;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . repeat_region 356902 356941 . ? . description=trf scaffold_41 . repeat_region 356905 356949 . ? . description=trf scaffold_41 ensembl protein_coding_gene 357424 359359 . + . ID=Physo135887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410078;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 357424 359359 . + . ID=Physo135887;Parent=Physo135887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 357424 357629 . + 0 ID=Physo135887;Parent=Physo135887;rank=1 scaffold_41 . exon 357424 357629 . + . ID=Physo135887.1;Parent=Physo135887;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 357981 358181 . + 0 ID=Physo135887;Parent=Physo135887;rank=2 scaffold_41 . exon 357981 358181 . + . ID=Physo135887.2;Parent=Physo135887;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_41 . CDS 358243 358281 . + 0 ID=Physo135887;Parent=Physo135887;rank=3 scaffold_41 . exon 358243 358281 . + . ID=Physo135887.3;Parent=Physo135887;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_41 . CDS 358618 359359 . + 0 ID=Physo135887;Parent=Physo135887;rank=4 scaffold_41 . exon 358618 359359 . + . ID=Physo135887.4;Parent=Physo135887;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 . repeat_region 361734 370453 . ? . description=dust scaffold_41 . repeat_region 372603 372652 . ? . description=dust scaffold_41 . biological_region 375020 375020 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 371028 372578 . - . ID=Physo135888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410079;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 371028 372578 . - . ID=Physo135888;Parent=Physo135888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 371028 372578 . - 0 ID=Physo135888;Parent=Physo135888;rank=1 scaffold_41 . exon 371028 372578 . - . ID=Physo135888.1;Parent=Physo135888;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 373812 375455 . - . ID=Physo135889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410080;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 373812 375455 . - . ID=Physo135889;Parent=Physo135889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 373812 375455 . - 0 ID=Physo135889;Parent=Physo135889;rank=1 scaffold_41 . exon 373812 375455 . - . ID=Physo135889.1;Parent=Physo135889;constitutive=1;rank=1 scaffold_41 . repeat_region 376517 376563 . ? . description=trf scaffold_41 . repeat_region 376565 376634 . ? . description=trf scaffold_41 . repeat_region 376566 376655 . ? . description=trf scaffold_41 . repeat_region 377096 377116 . ? . description=trf scaffold_41 . repeat_region 382786 382841 . ? . description=trf scaffold_41 ensembl protein_coding_gene 375698 377378 . - . ID=Physo135890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410081;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 375698 377378 . - . ID=Physo135890;Parent=Physo135890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 375698 376690 . - 0 ID=Physo135890;Parent=Physo135890;rank=1 scaffold_41 . exon 375698 376798 . - . ID=Physo135890.2;Parent=Physo135890;constitutive=1;ensembl_phase=-1;rank=2 scaffold_41 . exon 377344 377378 . - . ID=Physo135890.1;Parent=Physo135890;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_41 ensembl protein_coding_gene 378042 380727 . + . ID=Physo135891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410082;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 378042 380727 . + . ID=Physo135891;Parent=Physo135891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 378042 380714 . + 0 ID=Physo135891;Parent=Physo135891;rank=1 scaffold_41 . exon 378042 380727 . + . ID=Physo135891.1;Parent=Physo135891;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_41 ensembl protein_coding_gene 381799 383109 . - . ID=Physo135892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410083;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 381799 383109 . - . ID=Physo135892;Parent=Physo135892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 381799 383109 . - 0 ID=Physo135892;Parent=Physo135892;rank=1 scaffold_41 . exon 381799 383109 . - . ID=Physo135892.1;Parent=Physo135892;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 384149 384673 . - . ID=Physo135893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410084;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 384149 384673 . - . ID=Physo135893;Parent=Physo135893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 384149 384602 . - 0 ID=Physo135893;Parent=Physo135893;rank=2 scaffold_41 . exon 384149 384602 . - . ID=Physo135893.2;Parent=Physo135893;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 384627 384673 . - 0 ID=Physo135893;Parent=Physo135893;rank=1 scaffold_41 . exon 384627 384673 . - . ID=Physo135893.1;Parent=Physo135893;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . biological_region 386982 386985 0.999 - . logic_name=eponine scaffold_41 . biological_region 392106 392107 0.999 + . logic_name=eponine scaffold_41 . biological_region 392614 392617 0.999 + . logic_name=eponine scaffold_41 . biological_region 394636 394641 0.999 + . logic_name=eponine scaffold_41 . biological_region 394671 394674 0.999 - . logic_name=eponine scaffold_41 . biological_region 394741 394745 0.999 - . logic_name=eponine scaffold_41 . biological_region 394754 394756 0.999 + . logic_name=eponine scaffold_41 . biological_region 394756 394758 0.999 - . logic_name=eponine scaffold_41 . biological_region 394808 394811 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 386583 388248 . + . ID=Physo135894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410085;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 386583 388248 . + . ID=Physo135894;Parent=Physo135894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 386583 388248 . + . ID=Physo135894.1;Parent=Physo135894;constitutive=1;ensembl_phase=-1;rank=1 scaffold_41 . CDS 386704 388248 . + 0 ID=Physo135894;Parent=Physo135894;rank=1 scaffold_41 ensembl protein_coding_gene 388381 390636 . - . ID=Physo135895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410086;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 388381 390636 . - . ID=Physo135895;Parent=Physo135895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 388381 390636 . - 0 ID=Physo135895;Parent=Physo135895;rank=1 scaffold_41 . exon 388381 390636 . - . ID=Physo135895.1;Parent=Physo135895;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 393536 397055 . + . ID=Physo135896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410087;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 393536 397055 . + . ID=Physo135896;Parent=Physo135896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 393536 393540 . + 0 ID=Physo135896;Parent=Physo135896;rank=1 scaffold_41 . exon 393536 393540 . + . ID=Physo135896.1;Parent=Physo135896;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 393751 393812 . + 0 ID=Physo135896;Parent=Physo135896;rank=2 scaffold_41 . exon 393751 393812 . + . ID=Physo135896.2;Parent=Physo135896;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 393846 396838 . + 0 ID=Physo135896;Parent=Physo135896;rank=3 scaffold_41 . exon 393846 397055 . + . ID=Physo135896.3;Parent=Physo135896;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_41 ensembl protein_coding_gene 397139 398060 . + . ID=Physo135897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410088;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 397139 398060 . + . ID=Physo135897;Parent=Physo135897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 397139 397975 . + 0 ID=Physo135897;Parent=Physo135897;rank=1 scaffold_41 . exon 397139 397975 . + . ID=Physo135897.1;Parent=Physo135897;constitutive=1;rank=1 scaffold_41 . CDS 398043 398060 . + 0 ID=Physo135897;Parent=Physo135897;rank=2 scaffold_41 . exon 398043 398060 . + . ID=Physo135897.2;Parent=Physo135897;constitutive=1;rank=2 scaffold_41 ensembl protein_coding_gene 401231 402592 . + . ID=Physo135898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410089;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 401231 402592 . + . ID=Physo135898;Parent=Physo135898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 401231 402592 . + 0 ID=Physo135898;Parent=Physo135898;rank=1 scaffold_41 . exon 401231 402592 . + . ID=Physo135898.1;Parent=Physo135898;constitutive=1;rank=1 scaffold_41 . repeat_region 407901 407953 . ? . description=trf scaffold_41 . biological_region 408002 408005 0.999 - . logic_name=eponine scaffold_41 . biological_region 408904 408910 0.999 - . logic_name=eponine scaffold_41 . biological_region 413151 413153 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 407397 409999 . - . ID=Physo135899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410090;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 407397 409999 . - . ID=Physo135899;Parent=Physo135899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 407397 409985 . - 0 ID=Physo135899;Parent=Physo135899;rank=1 scaffold_41 . exon 407397 409999 . - . ID=Physo135899.1;Parent=Physo135899;constitutive=1;ensembl_phase=-1;rank=1 scaffold_41 ensembl protein_coding_gene 412284 413510 . - . ID=Physo135900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410091;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 412284 413510 . - . ID=Physo135900;Parent=Physo135900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 412284 412602 . - 0 ID=Physo135900;Parent=Physo135900;rank=3 scaffold_41 . exon 412284 412602 . - . ID=Physo135900.3;Parent=Physo135900;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 412760 412905 . - 0 ID=Physo135900;Parent=Physo135900;rank=2 scaffold_41 . exon 412760 412905 . - . ID=Physo135900.2;Parent=Physo135900;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_41 . CDS 413001 413510 . - 0 ID=Physo135900;Parent=Physo135900;rank=1 scaffold_41 . exon 413001 413510 . - . ID=Physo135900.1;Parent=Physo135900;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 418687 419796 . + . ID=Physo135902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410093;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 418687 419796 . + . ID=Physo135902;Parent=Physo135902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 418687 418690 . + 0 ID=Physo135902;Parent=Physo135902;rank=1 scaffold_41 . exon 418687 418690 . + . ID=Physo135902.1;Parent=Physo135902;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 418838 419796 . + 0 ID=Physo135902;Parent=Physo135902;rank=2 scaffold_41 . exon 418838 419796 . + . ID=Physo135902.2;Parent=Physo135902;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 ensembl protein_coding_gene 422086 422840 . + . ID=Physo135904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410095;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 422086 422840 . + . ID=Physo135904;Parent=Physo135904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 422086 422631 . + 0 ID=Physo135904;Parent=Physo135904;rank=1 scaffold_41 . exon 422086 422631 . + . ID=Physo135904.1;Parent=Physo135904;constitutive=1;rank=1 scaffold_41 . CDS 422700 422840 . + 0 ID=Physo135904;Parent=Physo135904;rank=2 scaffold_41 . exon 422700 422840 . + . ID=Physo135904.2;Parent=Physo135904;constitutive=1;rank=2 scaffold_41 ensembl protein_coding_gene 416958 418278 . - . ID=Physo157315;biotype=protein_coding;external_name=C_scaffold_41000017;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 416958 418278 . - . ID=Physo157315;Parent=Physo157315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 416958 417523 . - 0 ID=Physo157315;Parent=Physo157315;rank=3 scaffold_41 . exon 416958 417523 . - . ID=Physo157315.3;Parent=Physo157315;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 417598 417955 . - 0 ID=Physo157315;Parent=Physo157315;rank=2 scaffold_41 . exon 417598 417955 . - . ID=Physo157315.2;Parent=Physo157315;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 418033 418278 . - 0 ID=Physo157315;Parent=Physo157315;rank=1 scaffold_41 . exon 418033 418278 . - . ID=Physo157315.1;Parent=Physo157315;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 420089 421627 . - . ID=Physo157317;biotype=protein_coding;external_name=C_scaffold_41000019;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 420089 421627 . - . ID=Physo157317;Parent=Physo157317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 420089 420181 . - 0 ID=Physo157317;Parent=Physo157317;rank=8 scaffold_41 . exon 420089 420181 . - . ID=Physo157317.8;Parent=Physo157317;constitutive=1;rank=8 scaffold_41 . CDS 420252 420376 . - 0 ID=Physo157317;Parent=Physo157317;rank=7 scaffold_41 . exon 420252 420376 . - . ID=Physo157317.7;Parent=Physo157317;constitutive=1;ensembl_phase=1;rank=7 scaffold_41 . CDS 420476 420543 . - 0 ID=Physo157317;Parent=Physo157317;rank=6 scaffold_41 . exon 420476 420543 . - . ID=Physo157317.6;Parent=Physo157317;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_41 . CDS 420608 420803 . - 0 ID=Physo157317;Parent=Physo157317;rank=5 scaffold_41 . exon 420608 420803 . - . ID=Physo157317.5;Parent=Physo157317;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_41 . CDS 420874 420967 . - 0 ID=Physo157317;Parent=Physo157317;rank=4 scaffold_41 . exon 420874 420967 . - . ID=Physo157317.4;Parent=Physo157317;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_41 . CDS 421055 421106 . - 0 ID=Physo157317;Parent=Physo157317;rank=3 scaffold_41 . exon 421055 421106 . - . ID=Physo157317.3;Parent=Physo157317;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 421182 421474 . - 0 ID=Physo157317;Parent=Physo157317;rank=2 scaffold_41 . exon 421182 421474 . - . ID=Physo157317.2;Parent=Physo157317;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_41 . CDS 421555 421626 . - 0 ID=Physo157317;Parent=Physo157317;rank=1 scaffold_41 . exon 421555 421627 . - . ID=Physo157317.1;Parent=Physo157317;constitutive=1;ensembl_phase=-1;rank=1 scaffold_41 . biological_region 425339 425344 0.999 - . logic_name=eponine scaffold_41 . biological_region 425364 425367 0.999 - . logic_name=eponine scaffold_41 . biological_region 425397 425402 0.999 + . logic_name=eponine scaffold_41 . biological_region 426231 426235 0.999 - . logic_name=eponine scaffold_41 . biological_region 426235 426244 0.999 + . logic_name=eponine scaffold_41 . biological_region 426251 426258 0.999 + . logic_name=eponine scaffold_41 . biological_region 426257 426265 0.999 - . logic_name=eponine scaffold_41 . biological_region 426286 426291 0.999 + . logic_name=eponine scaffold_41 . biological_region 426315 426323 0.999 - . logic_name=eponine scaffold_41 . biological_region 426316 426319 0.999 + . logic_name=eponine scaffold_41 . biological_region 426345 426348 0.999 - . logic_name=eponine scaffold_41 . biological_region 426360 426360 0.999 - . logic_name=eponine scaffold_41 . biological_region 426902 426904 0.999 - . logic_name=eponine scaffold_41 . biological_region 427055 427056 0.999 - . logic_name=eponine scaffold_41 . biological_region 429273 429273 0.999 - . logic_name=eponine scaffold_41 . biological_region 429318 429319 0.999 - . logic_name=eponine scaffold_41 . biological_region 429356 429358 0.999 + . logic_name=eponine scaffold_41 . biological_region 430552 430554 0.999 + . logic_name=eponine scaffold_41 . biological_region 431582 431586 0.999 - . logic_name=eponine scaffold_41 . biological_region 431718 431718 0.999 - . logic_name=eponine scaffold_41 . biological_region 431854 431855 0.999 + . logic_name=eponine scaffold_41 . biological_region 432279 432280 0.999 + . logic_name=eponine scaffold_41 . biological_region 432312 432312 0.999 + . logic_name=eponine scaffold_41 . repeat_region 432319 432369 . ? . description=dust scaffold_41 . biological_region 432319 432324 0.999 + . logic_name=eponine scaffold_41 . biological_region 432374 432377 0.999 - . logic_name=eponine scaffold_41 . biological_region 432400 432400 0.999 - . logic_name=eponine scaffold_41 . biological_region 432669 432669 0.999 + . logic_name=eponine scaffold_41 . repeat_region 433022 433050 . ? . description=trf scaffold_41 . biological_region 433408 433410 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 426130 428679 . + . ID=Physo135905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410096;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 426130 428679 . + . ID=Physo135905;Parent=Physo135905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 426130 428679 . + 0 ID=Physo135905;Parent=Physo135905;rank=1 scaffold_41 . exon 426130 428679 . + . ID=Physo135905.1;Parent=Physo135905;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 428974 433456 . - . ID=Physo135906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410097;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 428974 433456 . - . ID=Physo135906;Parent=Physo135906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 428974 429120 . - 0 ID=Physo135906;Parent=Physo135906;rank=5 scaffold_41 . exon 428974 429120 . - . ID=Physo135906.5;Parent=Physo135906;constitutive=1;rank=5 scaffold_41 . CDS 429191 430688 . - 0 ID=Physo135906;Parent=Physo135906;rank=4 scaffold_41 . exon 429191 430688 . - . ID=Physo135906.4;Parent=Physo135906;constitutive=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 430766 430782 . - 0 ID=Physo135906;Parent=Physo135906;rank=3 scaffold_41 . exon 430766 430782 . - . ID=Physo135906.3;Parent=Physo135906;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 430919 432407 . - 0 ID=Physo135906;Parent=Physo135906;rank=2 scaffold_41 . exon 430919 432407 . - . ID=Physo135906.2;Parent=Physo135906;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 432588 433456 . - 0 ID=Physo135906;Parent=Physo135906;rank=1 scaffold_41 . exon 432588 433456 . - . ID=Physo135906.1;Parent=Physo135906;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 ensembl protein_coding_gene 435813 436574 . - . ID=Physo135907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410098;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 435813 436574 . - . ID=Physo135907;Parent=Physo135907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 435813 436574 . - 0 ID=Physo135907;Parent=Physo135907;rank=1 scaffold_41 . exon 435813 436574 . - . ID=Physo135907.1;Parent=Physo135907;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 437081 437752 . + . ID=Physo135908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410099;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 437081 437752 . + . ID=Physo135908;Parent=Physo135908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 437081 437752 . + 0 ID=Physo135908;Parent=Physo135908;rank=1 scaffold_41 . exon 437081 437752 . + . ID=Physo135908.1;Parent=Physo135908;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 437930 439767 . - . ID=Physo135909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410100;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 437930 439767 . - . ID=Physo135909;Parent=Physo135909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 437930 439157 . - 0 ID=Physo135909;Parent=Physo135909;rank=3 scaffold_41 . exon 437930 439157 . - . ID=Physo135909.3;Parent=Physo135909;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 439393 439648 . - 0 ID=Physo135909;Parent=Physo135909;rank=2 scaffold_41 . exon 439393 439648 . - . ID=Physo135909.2;Parent=Physo135909;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_41 . CDS 439749 439767 . - 0 ID=Physo135909;Parent=Physo135909;rank=1 scaffold_41 . exon 439749 439767 . - . ID=Physo135909.1;Parent=Physo135909;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 440817 444381 . + . ID=Physo135910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410101;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 440817 444381 . + . ID=Physo135910;Parent=Physo135910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 440817 442924 . + 0 ID=Physo135910;Parent=Physo135910;rank=1 scaffold_41 . exon 440817 442924 . + . ID=Physo135910.1;Parent=Physo135910;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 443154 444381 . + 0 ID=Physo135910;Parent=Physo135910;rank=2 scaffold_41 . exon 443154 444381 . + . ID=Physo135910.2;Parent=Physo135910;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 ensembl protein_coding_gene 444559 445230 . - . ID=Physo135911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410102;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 444559 445230 . - . ID=Physo135911;Parent=Physo135911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 444559 445230 . - 0 ID=Physo135911;Parent=Physo135911;rank=1 scaffold_41 . exon 444559 445230 . - . ID=Physo135911.1;Parent=Physo135911;constitutive=1;rank=1 scaffold_41 . repeat_region 446595 446602 . ? . description=dust scaffold_41 . repeat_region 452661 452676 . ? . description=dust scaffold_41 . biological_region 453152 453154 0.999 - . logic_name=eponine scaffold_41 . biological_region 453207 453211 0.999 + . logic_name=eponine scaffold_41 . biological_region 453247 453250 0.999 - . logic_name=eponine scaffold_41 . biological_region 453288 453294 0.999 - . logic_name=eponine scaffold_41 ensembl tRNA_gene 451271 451343 . - . ID=EPrPSOG00000000181;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_41 ensembl transcript 451271 451343 . - . ID=EPrPSOT00000000181;Parent=EPrPSOG00000000181;biotype=tRNA;logic_name=ncrna_eg scaffold_41 . exon 451271 451343 . - . ID=EPrPSOE00000000181;Parent=EPrPSOT00000000181;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 445737 446498 . + . ID=Physo135912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410103;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 445737 446498 . + . ID=Physo135912;Parent=Physo135912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 445737 446498 . + 0 ID=Physo135912;Parent=Physo135912;rank=1 scaffold_41 . exon 445737 446498 . + . ID=Physo135912.1;Parent=Physo135912;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 448370 449127 . + . ID=Physo135913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410104;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 448370 449127 . + . ID=Physo135913;Parent=Physo135913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 448370 448494 . + 0 ID=Physo135913;Parent=Physo135913;rank=1 scaffold_41 . exon 448370 448494 . + . ID=Physo135913.1;Parent=Physo135913;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 448517 449059 . + 0 ID=Physo135913;Parent=Physo135913;rank=2 scaffold_41 . exon 448517 449059 . + . ID=Physo135913.2;Parent=Physo135913;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_41 . CDS 449115 449127 . + 0 ID=Physo135913;Parent=Physo135913;rank=3 scaffold_41 . exon 449115 449127 . + . ID=Physo135913.3;Parent=Physo135913;constitutive=1;ensembl_phase=2;rank=3 scaffold_41 ensembl protein_coding_gene 449222 451093 . - . ID=Physo135914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410105;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 449222 451093 . - . ID=Physo135914;Parent=Physo135914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 449222 451093 . - 0 ID=Physo135914;Parent=Physo135914;rank=1 scaffold_41 . exon 449222 451093 . - . ID=Physo135914.1;Parent=Physo135914;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 451855 452660 . - . ID=Physo135915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410106;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 451855 452660 . - . ID=Physo135915;Parent=Physo135915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 451855 451975 . - . ID=Physo135915.2;Parent=Physo135915;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_41 . CDS 451910 451975 . - 0 ID=Physo135915;Parent=Physo135915;rank=2 scaffold_41 . CDS 451995 452660 . - 0 ID=Physo135915;Parent=Physo135915;rank=1 scaffold_41 . exon 451995 452660 . - . ID=Physo135915.1;Parent=Physo135915;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 453721 455865 . - . ID=Physo135916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410107;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 453721 455865 . - . ID=Physo135916;Parent=Physo135916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 453721 455865 . - 0 ID=Physo135916;Parent=Physo135916;rank=1 scaffold_41 . exon 453721 455865 . - . ID=Physo135916.1;Parent=Physo135916;constitutive=1;rank=1 scaffold_41 . repeat_region 455196 455228 . ? . description=trf scaffold_41 . repeat_region 456302 456341 . ? . description=trf scaffold_41 . repeat_region 458752 458883 . ? . description=trf scaffold_41 ensembl protein_coding_gene 456648 458517 . + . ID=Physo135917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410108;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 456648 458517 . + . ID=Physo135917;Parent=Physo135917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 456648 457118 . + 0 ID=Physo135917;Parent=Physo135917;rank=1 scaffold_41 . exon 456648 457118 . + . ID=Physo135917.1;Parent=Physo135917;constitutive=1;rank=1 scaffold_41 . CDS 457223 457324 . + 0 ID=Physo135917;Parent=Physo135917;rank=2 scaffold_41 . exon 457223 457324 . + . ID=Physo135917.2;Parent=Physo135917;constitutive=1;rank=2 scaffold_41 . CDS 457402 457502 . + 0 ID=Physo135917;Parent=Physo135917;rank=3 scaffold_41 . exon 457402 457502 . + . ID=Physo135917.3;Parent=Physo135917;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_41 . CDS 457572 457738 . + 0 ID=Physo135917;Parent=Physo135917;rank=4 scaffold_41 . exon 457572 457738 . + . ID=Physo135917.4;Parent=Physo135917;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_41 . CDS 457779 457812 . + 0 ID=Physo135917;Parent=Physo135917;rank=5 scaffold_41 . exon 457779 457812 . + . ID=Physo135917.5;Parent=Physo135917;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_41 . CDS 458032 458128 . + 0 ID=Physo135917;Parent=Physo135917;rank=6 scaffold_41 . exon 458032 458128 . + . ID=Physo135917.6;Parent=Physo135917;constitutive=1;ensembl_phase=2;rank=6 scaffold_41 . CDS 458202 458359 . + 0 ID=Physo135917;Parent=Physo135917;rank=7 scaffold_41 . exon 458202 458359 . + . ID=Physo135917.7;Parent=Physo135917;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_41 . CDS 458451 458517 . + 0 ID=Physo135917;Parent=Physo135917;rank=8 scaffold_41 . exon 458451 458517 . + . ID=Physo135917.8;Parent=Physo135917;constitutive=1;ensembl_phase=2;rank=8 scaffold_41 ensembl protein_coding_gene 462816 463721 . - . ID=Physo135918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410109;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 462816 463721 . - . ID=Physo135918;Parent=Physo135918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 462816 463721 . - 0 ID=Physo135918;Parent=Physo135918;rank=1 scaffold_41 . exon 462816 463721 . - . ID=Physo135918.1;Parent=Physo135918;constitutive=1;rank=1 scaffold_41 . biological_region 465035 465035 0.999 + . logic_name=eponine scaffold_41 . biological_region 465073 465076 0.999 + . logic_name=eponine scaffold_41 . biological_region 468393 468393 0.999 + . logic_name=eponine scaffold_41 . biological_region 470746 470759 0.999 + . logic_name=eponine scaffold_41 . biological_region 470776 470780 0.999 + . logic_name=eponine scaffold_41 . biological_region 472008 472017 0.999 - . logic_name=eponine scaffold_41 . biological_region 472026 472031 0.999 - . logic_name=eponine scaffold_41 . biological_region 473420 473426 0.999 - . logic_name=eponine scaffold_41 . biological_region 473529 473532 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 464838 466108 . + . ID=Physo135919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410110;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 464838 466108 . + . ID=Physo135919;Parent=Physo135919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 464838 465255 . + 0 ID=Physo135919;Parent=Physo135919;rank=1 scaffold_41 . exon 464838 465255 . + . ID=Physo135919.1;Parent=Physo135919;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 465315 465439 . + 0 ID=Physo135919;Parent=Physo135919;rank=2 scaffold_41 . exon 465315 465439 . + . ID=Physo135919.2;Parent=Physo135919;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 465512 465703 . + 0 ID=Physo135919;Parent=Physo135919;rank=3 scaffold_41 . exon 465512 465703 . + . ID=Physo135919.3;Parent=Physo135919;constitutive=1;rank=3 scaffold_41 . CDS 465783 465968 . + 0 ID=Physo135919;Parent=Physo135919;rank=4 scaffold_41 . exon 465783 466108 . + . ID=Physo135919.4;Parent=Physo135919;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_41 ensembl protein_coding_gene 467623 469056 . - . ID=Physo135920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410111;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 467623 469056 . - . ID=Physo135920;Parent=Physo135920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 467623 469056 . - 0 ID=Physo135920;Parent=Physo135920;rank=1 scaffold_41 . exon 467623 469056 . - . ID=Physo135920.1;Parent=Physo135920;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 469563 470828 . - . ID=Physo135921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410112;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 469563 470828 . - . ID=Physo135921;Parent=Physo135921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 469563 469852 . - 0 ID=Physo135921;Parent=Physo135921;rank=4 scaffold_41 . exon 469563 469852 . - . ID=Physo135921.4;Parent=Physo135921;constitutive=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 469923 470495 . - 0 ID=Physo135921;Parent=Physo135921;rank=3 scaffold_41 . exon 469923 470495 . - . ID=Physo135921.3;Parent=Physo135921;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_41 . CDS 470569 470664 . - 0 ID=Physo135921;Parent=Physo135921;rank=2 scaffold_41 . exon 470569 470664 . - . ID=Physo135921.2;Parent=Physo135921;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 470732 470828 . - 0 ID=Physo135921;Parent=Physo135921;rank=1 scaffold_41 . exon 470732 470828 . - . ID=Physo135921.1;Parent=Physo135921;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 471771 472118 . + . ID=Physo135922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410113;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 471771 472118 . + . ID=Physo135922;Parent=Physo135922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 471771 472118 . + 0 ID=Physo135922;Parent=Physo135922;rank=1 scaffold_41 . exon 471771 472118 . + . ID=Physo135922.1;Parent=Physo135922;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 473366 475669 . + . ID=Physo135923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410114;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 473366 475669 . + . ID=Physo135923;Parent=Physo135923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 473366 475229 . + 0 ID=Physo135923;Parent=Physo135923;rank=1 scaffold_41 . exon 473366 475229 . + . ID=Physo135923.1;Parent=Physo135923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 . CDS 475314 475669 . + 0 ID=Physo135923;Parent=Physo135923;rank=2 scaffold_41 . repeat_region 482906 482915 . ? . description=dust scaffold_41 ensembl protein_coding_gene 476073 477554 . + . ID=Physo108903;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_410002;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 476073 477554 . + . ID=Physo108903;Parent=Physo108903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 476073 476230 . + 0 ID=Physo108903;Parent=Physo108903;rank=1 scaffold_41 . exon 476073 476230 . + . ID=Physo108903.1;Parent=Physo108903;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 476287 476584 . + 0 ID=Physo108903;Parent=Physo108903;rank=2 scaffold_41 . exon 476287 476584 . + . ID=Physo108903.2;Parent=Physo108903;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 476670 477554 . + 0 ID=Physo108903;Parent=Physo108903;rank=3 scaffold_41 . exon 476670 477554 . + . ID=Physo108903.3;Parent=Physo108903;constitutive=1;rank=3 scaffold_41 ensembl protein_coding_gene 477954 480356 . + . ID=Physo108904;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_410003;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 477954 480356 . + . ID=Physo108904;Parent=Physo108904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 477954 480356 . + 0 ID=Physo108904;Parent=Physo108904;rank=1 scaffold_41 . exon 477954 480356 . + . ID=Physo108904.1;Parent=Physo108904;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 483202 484641 . + . ID=Physo108905;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_410004;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 483202 484641 . + . ID=Physo108905;Parent=Physo108905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 483202 484641 . + 0 ID=Physo108905;Parent=Physo108905;rank=1 scaffold_41 . exon 483202 484641 . + . ID=Physo108905.1;Parent=Physo108905;constitutive=1;rank=1 scaffold_41 . exon 475314 475669 . + . ID=Physo135923.2;Parent=Physo135923;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 ensembl protein_coding_gene 480571 481545 . - . ID=Physo135926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410117;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 480571 481545 . - . ID=Physo135926;Parent=Physo135926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 480571 480918 . - 0 ID=Physo135926;Parent=Physo135926;rank=4 scaffold_41 . exon 480571 480918 . - . ID=Physo135926.4;Parent=Physo135926;constitutive=1;rank=4 scaffold_41 . CDS 480984 481088 . - 0 ID=Physo135926;Parent=Physo135926;rank=3 scaffold_41 . exon 480984 481088 . - . ID=Physo135926.3;Parent=Physo135926;constitutive=1;rank=3 scaffold_41 . CDS 481191 481194 . - 0 ID=Physo135926;Parent=Physo135926;rank=2 scaffold_41 . exon 481191 481194 . - . ID=Physo135926.2;Parent=Physo135926;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 481277 481545 . - 0 ID=Physo135926;Parent=Physo135926;rank=1 scaffold_41 . exon 481277 481545 . - . ID=Physo135926.1;Parent=Physo135926;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . biological_region 487032 487034 0.999 + . logic_name=eponine scaffold_41 . biological_region 487109 487109 0.999 + . logic_name=eponine scaffold_41 . biological_region 488228 488229 0.999 - . logic_name=eponine scaffold_41 . biological_region 489458 489458 0.999 + . logic_name=eponine scaffold_41 . biological_region 489810 489814 0.999 + . logic_name=eponine scaffold_41 . repeat_region 489877 489964 . ? . description=trf scaffold_41 . repeat_region 490154 490180 . ? . description=trf scaffold_41 . biological_region 490862 490868 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 484869 486632 . + . ID=Physo135928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410119;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 484869 486632 . + . ID=Physo135928;Parent=Physo135928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 484869 486632 . + 0 ID=Physo135928;Parent=Physo135928;rank=1 scaffold_41 . exon 484869 486632 . + . ID=Physo135928.1;Parent=Physo135928;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 486830 487267 . - . ID=Physo135929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410120;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 486830 487267 . - . ID=Physo135929;Parent=Physo135929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 486830 487267 . - 0 ID=Physo135929;Parent=Physo135929;rank=1 scaffold_41 . exon 486830 487267 . - . ID=Physo135929.1;Parent=Physo135929;constitutive=1;rank=1 scaffold_41 ensembl protein_coding_gene 488047 489377 . - . ID=Physo135930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410121;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 488047 489377 . - . ID=Physo135930;Parent=Physo135930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 488047 489058 . - 0 ID=Physo135930;Parent=Physo135930;rank=2 scaffold_41 . exon 488047 489058 . - . ID=Physo135930.2;Parent=Physo135930;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 489154 489275 . - 0 ID=Physo135930;Parent=Physo135930;rank=1 scaffold_41 . exon 489154 489377 . - . ID=Physo135930.1;Parent=Physo135930;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_41 ensembl protein_coding_gene 489818 492899 . + . ID=Physo135931;biotype=protein_coding;description=Cell 5A endo-1%2C4-betaglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q2I0L1];external_name=EGL-V.7;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 489818 492899 . + . ID=Physo135931;Parent=Physo135931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 489818 490026 . + 0 ID=Physo135931;Parent=Physo135931;rank=1 scaffold_41 . exon 489818 490026 . + . ID=Physo135931.1;Parent=Physo135931;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 490286 490369 . + 0 ID=Physo135931;Parent=Physo135931;rank=2 scaffold_41 . exon 490286 490369 . + . ID=Physo135931.2;Parent=Physo135931;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_41 . CDS 490564 490568 . + 0 ID=Physo135931;Parent=Physo135931;rank=3 scaffold_41 . exon 490564 490568 . + . ID=Physo135931.3;Parent=Physo135931;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_41 . CDS 490773 491179 . + 0 ID=Physo135931;Parent=Physo135931;rank=4 scaffold_41 . exon 490773 491179 . + . ID=Physo135931.4;Parent=Physo135931;constitutive=1;ensembl_phase=1;rank=4 scaffold_41 . CDS 491260 492268 . + 0 ID=Physo135931;Parent=Physo135931;rank=5 scaffold_41 . exon 491260 492268 . + . ID=Physo135931.5;Parent=Physo135931;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_41 . CDS 492346 492833 . + 0 ID=Physo135931;Parent=Physo135931;rank=6 scaffold_41 . exon 492346 492899 . + . ID=Physo135931.6;Parent=Physo135931;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_41 . repeat_region 502073 502098 . ? . description=dust scaffold_41 . repeat_region 503611 503623 . ? . description=dust scaffold_41 ensembl protein_coding_gene 501063 501878 . + . ID=Physo117339;biotype=protein_coding;external_name=estExt_Genewise1.C_410055;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 501063 501878 . + . ID=Physo117339;Parent=Physo117339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . exon 501063 501878 . + . ID=Physo117339.1;Parent=Physo117339;constitutive=1;ensembl_phase=-1;rank=1 scaffold_41 . CDS 501129 501878 . + 0 ID=Physo117339;Parent=Physo117339;rank=1 scaffold_41 ensembl protein_coding_gene 495135 497168 . + . ID=Physo135932;biotype=protein_coding;description=Cell 5A endo-1%2C4-betaglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q2I0L0];external_name=EGL-V.8;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 495135 497168 . + . ID=Physo135932;Parent=Physo135932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 495135 495491 . + 0 ID=Physo135932;Parent=Physo135932;rank=1 scaffold_41 . exon 495135 495491 . + . ID=Physo135932.1;Parent=Physo135932;constitutive=1;rank=1 scaffold_41 . CDS 495588 496596 . + 0 ID=Physo135932;Parent=Physo135932;rank=2 scaffold_41 . exon 495588 496596 . + . ID=Physo135932.2;Parent=Physo135932;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_41 . CDS 496690 497168 . + 0 ID=Physo135932;Parent=Physo135932;rank=3 scaffold_41 . exon 496690 497168 . + . ID=Physo135932.3;Parent=Physo135932;constitutive=1;ensembl_phase=1;rank=3 scaffold_41 ensembl protein_coding_gene 499452 500755 . - . ID=Physo135933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410124;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 499452 500755 . - . ID=Physo135933;Parent=Physo135933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 499452 499520 . - 0 ID=Physo135933;Parent=Physo135933;rank=3 scaffold_41 . exon 499452 499520 . - . ID=Physo135933.3;Parent=Physo135933;constitutive=1;rank=3 scaffold_41 . CDS 499804 500614 . - 0 ID=Physo135933;Parent=Physo135933;rank=2 scaffold_41 . exon 499804 500614 . - . ID=Physo135933.2;Parent=Physo135933;constitutive=1;ensembl_phase=2;rank=2 scaffold_41 . CDS 500703 500755 . - 0 ID=Physo135933;Parent=Physo135933;rank=1 scaffold_41 . exon 500703 500755 . - . ID=Physo135933.1;Parent=Physo135933;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 ensembl protein_coding_gene 502145 503045 . - . ID=Physo135935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410126;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 502145 503045 . - . ID=Physo135935;Parent=Physo135935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 502145 502893 . - 0 ID=Physo135935;Parent=Physo135935;rank=2 scaffold_41 . exon 502145 502893 . - . ID=Physo135935.2;Parent=Physo135935;constitutive=1;ensembl_phase=1;rank=2 scaffold_41 . CDS 502997 503045 . - 0 ID=Physo135935;Parent=Physo135935;rank=1 scaffold_41 . exon 502997 503045 . - . ID=Physo135935.1;Parent=Physo135935;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_41 ensembl protein_coding_gene 503657 505270 . - . ID=Physo135936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410127;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 503657 505270 . - . ID=Physo135936;Parent=Physo135936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 503657 505270 . - 0 ID=Physo135936;Parent=Physo135936;rank=1 scaffold_41 . exon 503657 505270 . - . ID=Physo135936.1;Parent=Physo135936;constitutive=1;rank=1 scaffold_41 . repeat_region 508834 508873 . ? . description=trf scaffold_41 . biological_region 510707 510707 0.999 + . logic_name=eponine scaffold_41 . repeat_region 511197 511252 . ? . description=trf scaffold_41 . biological_region 511653 511656 0.999 + . logic_name=eponine scaffold_41 . biological_region 512179 512179 0.999 - . logic_name=eponine scaffold_41 ensembl protein_coding_gene 509429 512320 . + . ID=Physo135937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_410128;logic_name=jgi_physo1_1 scaffold_41 ensembl transcript 509429 512320 . + . ID=Physo135937;Parent=Physo135937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_41 . CDS 509429 510021 . + 0 ID=Physo135937;Parent=Physo135937;rank=1 scaffold_41 . exon 509429 510021 . + . ID=Physo135937.1;Parent=Physo135937;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_41 . CDS 510403 512320 . + 0 ID=Physo135937;Parent=Physo135937;rank=2 scaffold_41 . exon 510403 512320 . + . ID=Physo135937.2;Parent=Physo135937;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_45 1 515637 scaffold_45 . repeat_region 1362 1384 . ? . description=dust scaffold_45 . biological_region 1898 1903 0.999 - . logic_name=eponine scaffold_45 . biological_region 1949 1953 0.999 + . logic_name=eponine scaffold_45 . biological_region 1982 1996 0.999 + . logic_name=eponine scaffold_45 . repeat_region 1985 2043 . ? . description=dust scaffold_45 . biological_region 2017 2020 0.999 - . logic_name=eponine scaffold_45 . biological_region 2139 2142 0.999 - . logic_name=eponine scaffold_45 . biological_region 3228 3232 0.999 - . logic_name=eponine scaffold_45 . biological_region 4303 4305 0.999 + . logic_name=eponine scaffold_45 . biological_region 4365 4370 0.999 - . logic_name=eponine scaffold_45 . repeat_region 4803 4811 . ? . description=dust scaffold_45 . biological_region 7409 7412 0.999 + . logic_name=eponine scaffold_45 . biological_region 7495 7496 0.999 - . logic_name=eponine scaffold_45 ensembl tRNA_gene 515 587 . + . ID=EPrPSOG00000000077;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_45 ensembl transcript 515 587 . + . ID=EPrPSOT00000000077;Parent=EPrPSOG00000000077;biotype=tRNA;logic_name=ncrna_eg scaffold_45 . exon 515 587 . + . ID=EPrPSOE00000000077;Parent=EPrPSOT00000000077;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 324 4674 . + . ID=Physo108933;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450001;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 324 4674 . + . ID=Physo108933;Parent=Physo108933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 324 406 . + 0 ID=Physo108933;Parent=Physo108933;rank=1 scaffold_45 . exon 324 406 . + . ID=Physo108933.1;Parent=Physo108933;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 901 919 . + 0 ID=Physo108933;Parent=Physo108933;rank=2 scaffold_45 . exon 901 919 . + . ID=Physo108933.2;Parent=Physo108933;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 1583 1667 . + 0 ID=Physo108933;Parent=Physo108933;rank=3 scaffold_45 . exon 1583 1667 . + . ID=Physo108933.3;Parent=Physo108933;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . CDS 1805 2163 . + 0 ID=Physo108933;Parent=Physo108933;rank=4 scaffold_45 . exon 1805 2163 . + . ID=Physo108933.4;Parent=Physo108933;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 2197 4674 . + 0 ID=Physo108933;Parent=Physo108933;rank=5 scaffold_45 . exon 2197 4674 . + . ID=Physo108933.5;Parent=Physo108933;constitutive=1;rank=5 scaffold_45 ensembl protein_coding_gene 6200 7767 . + . ID=Physo108934;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450002;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 6200 7767 . + . ID=Physo108934;Parent=Physo108934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 6200 7759 . + 0 ID=Physo108934;Parent=Physo108934;rank=1 scaffold_45 . exon 6200 7767 . + . ID=Physo108934.1;Parent=Physo108934;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 4812 5947 . + . ID=Physo136311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450002;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 4812 5947 . + . ID=Physo136311;Parent=Physo136311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 4812 4932 . + . ID=Physo136311.1;Parent=Physo136311;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_45 . CDS 4875 4932 . + 0 ID=Physo136311;Parent=Physo136311;rank=1 scaffold_45 . CDS 5027 5099 . + 0 ID=Physo136311;Parent=Physo136311;rank=2 scaffold_45 . exon 5027 5099 . + . ID=Physo136311.2;Parent=Physo136311;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_45 . CDS 5196 5296 . + 0 ID=Physo136311;Parent=Physo136311;rank=3 scaffold_45 . exon 5196 5296 . + . ID=Physo136311.3;Parent=Physo136311;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 5385 5450 . + 0 ID=Physo136311;Parent=Physo136311;rank=4 scaffold_45 . exon 5385 5450 . + . ID=Physo136311.4;Parent=Physo136311;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 5536 5633 . + 0 ID=Physo136311;Parent=Physo136311;rank=5 scaffold_45 . exon 5536 5633 . + . ID=Physo136311.5;Parent=Physo136311;constitutive=1;ensembl_phase=1;rank=5 scaffold_45 . CDS 5720 5947 . + 0 ID=Physo136311;Parent=Physo136311;rank=6 scaffold_45 . exon 5720 5947 . + . ID=Physo136311.6;Parent=Physo136311;constitutive=1;rank=6 scaffold_45 ensembl protein_coding_gene 7873 8841 . - . ID=Physo136313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450004;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 7873 8841 . - . ID=Physo136313;Parent=Physo136313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 7873 8841 . - 0 ID=Physo136313;Parent=Physo136313;rank=1 scaffold_45 . exon 7873 8841 . - . ID=Physo136313.1;Parent=Physo136313;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 10333 12417 . - . ID=Physo136314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450005;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 10333 12417 . - . ID=Physo136314;Parent=Physo136314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 10333 10343 . - 0 ID=Physo136314;Parent=Physo136314;rank=5 scaffold_45 . exon 10333 10343 . - . ID=Physo136314.5;Parent=Physo136314;constitutive=1;ensembl_phase=1;rank=5 scaffold_45 . CDS 10373 10385 . - 0 ID=Physo136314;Parent=Physo136314;rank=4 scaffold_45 . exon 10373 10385 . - . ID=Physo136314.4;Parent=Physo136314;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_45 . CDS 10449 10559 . - 0 ID=Physo136314;Parent=Physo136314;rank=3 scaffold_45 . exon 10449 10559 . - . ID=Physo136314.3;Parent=Physo136314;constitutive=1;rank=3 scaffold_45 . CDS 10633 11714 . - 0 ID=Physo136314;Parent=Physo136314;rank=2 scaffold_45 . exon 10633 11714 . - . ID=Physo136314.2;Parent=Physo136314;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 11802 12417 . - 0 ID=Physo136314;Parent=Physo136314;rank=1 scaffold_45 . exon 11802 12417 . - . ID=Physo136314.1;Parent=Physo136314;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 12723 13817 . + . ID=Physo136315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450006;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 12723 13817 . + . ID=Physo136315;Parent=Physo136315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 12723 13817 . + 0 ID=Physo136315;Parent=Physo136315;rank=1 scaffold_45 . exon 12723 13817 . + . ID=Physo136315.1;Parent=Physo136315;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 18748 21608 . - . ID=Physo136318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450009;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 18748 21608 . - . ID=Physo136318;Parent=Physo136318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 18748 20083 . - 0 ID=Physo136318;Parent=Physo136318;rank=2 scaffold_45 . exon 18748 20083 . - . ID=Physo136318.2;Parent=Physo136318;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 20242 21608 . - 0 ID=Physo136318;Parent=Physo136318;rank=1 scaffold_45 ensembl protein_coding_gene 13961 17062 . - . ID=Physo157379;biotype=protein_coding;external_name=C_scaffold_45000002;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 13961 17062 . - . ID=Physo157379;Parent=Physo157379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 13961 13980 . - 0 ID=Physo157379;Parent=Physo157379;rank=8 scaffold_45 . exon 13961 13980 . - . ID=Physo157379.8;Parent=Physo157379;constitutive=1;ensembl_phase=1;rank=8 scaffold_45 . CDS 14011 14489 . - 0 ID=Physo157379;Parent=Physo157379;rank=7 scaffold_45 . exon 14011 14489 . - . ID=Physo157379.7;Parent=Physo157379;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_45 . CDS 14520 14743 . - 0 ID=Physo157379;Parent=Physo157379;rank=6 scaffold_45 . exon 14520 14743 . - . ID=Physo157379.6;Parent=Physo157379;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_45 . CDS 14814 15036 . - 0 ID=Physo157379;Parent=Physo157379;rank=5 scaffold_45 . exon 14814 15036 . - . ID=Physo157379.5;Parent=Physo157379;constitutive=1;ensembl_phase=2;rank=5 scaffold_45 . CDS 15117 16234 . - 0 ID=Physo157379;Parent=Physo157379;rank=4 scaffold_45 . exon 15117 16234 . - . ID=Physo157379.4;Parent=Physo157379;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_45 . CDS 16271 16654 . - 0 ID=Physo157379;Parent=Physo157379;rank=3 scaffold_45 . exon 16271 16654 . - . ID=Physo157379.3;Parent=Physo157379;constitutive=1;rank=3 scaffold_45 . CDS 16700 16923 . - 0 ID=Physo157379;Parent=Physo157379;rank=2 scaffold_45 . exon 16700 16923 . - . ID=Physo157379.2;Parent=Physo157379;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 16969 17062 . - 0 ID=Physo157379;Parent=Physo157379;rank=1 scaffold_45 . exon 16969 17062 . - . ID=Physo157379.1;Parent=Physo157379;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 17411 18277 . - . ID=Physo157380;biotype=protein_coding;external_name=C_scaffold_45000003;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 17411 18277 . - . ID=Physo157380;Parent=Physo157380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 17411 18277 . - 0 ID=Physo157380;Parent=Physo157380;rank=1 scaffold_45 . exon 17411 18277 . - . ID=Physo157380.1;Parent=Physo157380;constitutive=1;rank=1 scaffold_45 . biological_region 22895 22897 0.999 + . logic_name=eponine scaffold_45 . biological_region 22921 22924 0.999 - . logic_name=eponine scaffold_45 . biological_region 22938 22941 0.999 - . logic_name=eponine scaffold_45 . biological_region 23493 23498 0.999 - . logic_name=eponine scaffold_45 . biological_region 23645 23648 0.999 + . logic_name=eponine scaffold_45 . biological_region 24400 24401 0.999 + . logic_name=eponine scaffold_45 . exon 20242 21608 . - . ID=Physo136318.1;Parent=Physo136318;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 22867 25181 . + . ID=Physo136319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450010;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 22867 25181 . + . ID=Physo136319;Parent=Physo136319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 22867 22969 . + 0 ID=Physo136319;Parent=Physo136319;rank=1 scaffold_45 . exon 22867 22969 . + . ID=Physo136319.1;Parent=Physo136319;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 23071 25181 . + 0 ID=Physo136319;Parent=Physo136319;rank=2 scaffold_45 . exon 23071 25181 . + . ID=Physo136319.2;Parent=Physo136319;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 ensembl protein_coding_gene 27011 28352 . + . ID=Physo136320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450011;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 27011 28352 . + . ID=Physo136320;Parent=Physo136320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 27011 28121 . + 0 ID=Physo136320;Parent=Physo136320;rank=1 scaffold_45 . exon 27011 28121 . + . ID=Physo136320.1;Parent=Physo136320;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 28288 28352 . + 0 ID=Physo136320;Parent=Physo136320;rank=2 scaffold_45 . exon 28288 28352 . + . ID=Physo136320.2;Parent=Physo136320;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . repeat_region 35993 36000 . ? . description=dust scaffold_45 ensembl protein_coding_gene 32522 33581 . - . ID=Physo136321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450012;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 32522 33581 . - . ID=Physo136321;Parent=Physo136321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 32522 32598 . - 0 ID=Physo136321;Parent=Physo136321;rank=4 scaffold_45 . exon 32522 32598 . - . ID=Physo136321.4;Parent=Physo136321;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 32669 33018 . - 0 ID=Physo136321;Parent=Physo136321;rank=3 scaffold_45 . exon 32669 33018 . - . ID=Physo136321.3;Parent=Physo136321;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 33082 33158 . - 0 ID=Physo136321;Parent=Physo136321;rank=2 scaffold_45 . exon 33082 33158 . - . ID=Physo136321.2;Parent=Physo136321;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 33234 33581 . - 0 ID=Physo136321;Parent=Physo136321;rank=1 scaffold_45 . exon 33234 33581 . - . ID=Physo136321.1;Parent=Physo136321;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 34208 35032 . + . ID=Physo136322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450013;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 34208 35032 . + . ID=Physo136322;Parent=Physo136322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 34208 34234 . + 0 ID=Physo136322;Parent=Physo136322;rank=1 scaffold_45 . exon 34208 34234 . + . ID=Physo136322.1;Parent=Physo136322;constitutive=1;rank=1 scaffold_45 . CDS 34454 35032 . + 0 ID=Physo136322;Parent=Physo136322;rank=2 scaffold_45 . exon 34454 35032 . + . ID=Physo136322.2;Parent=Physo136322;constitutive=1;rank=2 scaffold_45 . biological_region 40159 40163 0.999 - . logic_name=eponine scaffold_45 . repeat_region 42179 42248 . ? . description=trf scaffold_45 . biological_region 42722 42724 0.999 + . logic_name=eponine scaffold_45 . biological_region 43076 43078 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 42696 43121 . - . ID=Physo136323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450014;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 42696 43121 . - . ID=Physo136323;Parent=Physo136323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 42696 43121 . - 0 ID=Physo136323;Parent=Physo136323;rank=1 scaffold_45 . exon 42696 43121 . - . ID=Physo136323.1;Parent=Physo136323;constitutive=1;rank=1 scaffold_45 . repeat_region 51258 51266 . ? . description=dust scaffold_45 . repeat_region 52327 52339 . ? . description=dust scaffold_45 . repeat_region 55217 55224 . ? . description=dust scaffold_45 . repeat_region 55830 55838 . ? . description=dust scaffold_45 . repeat_region 58061 58074 . ? . description=dust scaffold_45 . biological_region 60205 60207 0.999 + . logic_name=eponine scaffold_45 . biological_region 61806 61808 0.999 + . logic_name=eponine scaffold_45 . biological_region 62243 62244 0.999 + . logic_name=eponine scaffold_45 . biological_region 62727 62731 0.999 + . logic_name=eponine scaffold_45 . repeat_region 65072 65122 . ? . description=trf scaffold_45 . repeat_region 65610 65681 . + . description=Sola3-2_PS scaffold_45 . repeat_region 67740 67810 . + . description=Sola3-2_PS scaffold_45 . repeat_region 69451 69458 . ? . description=dust scaffold_45 . repeat_region 77962 77981 . ? . description=dust scaffold_45 ensembl protein_coding_gene 75331 76194 . - . ID=Physo108936;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450004;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 75331 76194 . - . ID=Physo108936;Parent=Physo108936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 75331 75534 . - 0 ID=Physo108936;Parent=Physo108936;rank=2 scaffold_45 . exon 75331 75534 . - . ID=Physo108936.2;Parent=Physo108936;constitutive=1;rank=2 scaffold_45 . CDS 75583 76194 . - 0 ID=Physo108936;Parent=Physo108936;rank=1 scaffold_45 . exon 75583 76194 . - . ID=Physo108936.1;Parent=Physo108936;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 70078 72629 . + . ID=Physo117680;biotype=protein_coding;external_name=estExt_Genewise1.C_450074;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 70078 72629 . + . ID=Physo117680;Parent=Physo117680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 70078 70325 . + . ID=Physo117680.1;Parent=Physo117680;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_45 . CDS 70210 70325 . + 0 ID=Physo117680;Parent=Physo117680;rank=1 scaffold_45 . CDS 70398 70458 . + 0 ID=Physo117680;Parent=Physo117680;rank=2 scaffold_45 . exon 70398 70458 . + . ID=Physo117680.2;Parent=Physo117680;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 70536 70866 . + 0 ID=Physo117680;Parent=Physo117680;rank=3 scaffold_45 . exon 70536 70866 . + . ID=Physo117680.3;Parent=Physo117680;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . CDS 71155 71531 . + 0 ID=Physo117680;Parent=Physo117680;rank=4 scaffold_45 . exon 71155 71531 . + . ID=Physo117680.4;Parent=Physo117680;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 71607 72557 . + 0 ID=Physo117680;Parent=Physo117680;rank=5 scaffold_45 . exon 71607 72629 . + . ID=Physo117680.5;Parent=Physo117680;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_45 ensembl protein_coding_gene 72774 74872 . - . ID=Physo136326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450017;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 72774 74872 . - . ID=Physo136326;Parent=Physo136326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 72774 73804 . - 0 ID=Physo136326;Parent=Physo136326;rank=2 scaffold_45 . exon 72774 73804 . - . ID=Physo136326.2;Parent=Physo136326;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 74125 74872 . - 0 ID=Physo136326;Parent=Physo136326;rank=1 scaffold_45 . exon 74125 74872 . - . ID=Physo136326.1;Parent=Physo136326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 76376 77022 . + . ID=Physo136328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450019;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 76376 77022 . + . ID=Physo136328;Parent=Physo136328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 76376 77022 . + . ID=Physo136328.1;Parent=Physo136328;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_45 . CDS 76378 76998 . + 0 ID=Physo136328;Parent=Physo136328;rank=1 scaffold_45 ensembl protein_coding_gene 77175 78239 . - . ID=Physo136329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450020;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 77175 78239 . - . ID=Physo136329;Parent=Physo136329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 77175 78239 . - 0 ID=Physo136329;Parent=Physo136329;rank=1 scaffold_45 . exon 77175 78239 . - . ID=Physo136329.1;Parent=Physo136329;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 78422 79862 . + . ID=Physo136330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450021;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 78422 79862 . + . ID=Physo136330;Parent=Physo136330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 78422 78494 . + 0 ID=Physo136330;Parent=Physo136330;rank=1 scaffold_45 . exon 78422 78494 . + . ID=Physo136330.1;Parent=Physo136330;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 78622 78810 . + 0 ID=Physo136330;Parent=Physo136330;rank=2 scaffold_45 . exon 78622 78810 . + . ID=Physo136330.2;Parent=Physo136330;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 78844 79199 . + 0 ID=Physo136330;Parent=Physo136330;rank=3 scaffold_45 . exon 78844 79199 . + . ID=Physo136330.3;Parent=Physo136330;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 79274 79525 . + 0 ID=Physo136330;Parent=Physo136330;rank=4 scaffold_45 . exon 79274 79525 . + . ID=Physo136330.4;Parent=Physo136330;constitutive=1;rank=4 scaffold_45 . CDS 79599 79862 . + 0 ID=Physo136330;Parent=Physo136330;rank=5 scaffold_45 . biological_region 80739 80745 0.999 + . logic_name=eponine scaffold_45 . biological_region 80971 80973 0.999 + . logic_name=eponine scaffold_45 . biological_region 81017 81022 0.999 + . logic_name=eponine scaffold_45 . biological_region 81036 81038 0.999 + . logic_name=eponine scaffold_45 . biological_region 81137 81143 0.999 - . logic_name=eponine scaffold_45 . biological_region 81526 81527 0.999 + . logic_name=eponine scaffold_45 . biological_region 88953 88956 0.999 + . logic_name=eponine scaffold_45 . biological_region 89061 89066 0.999 + . logic_name=eponine scaffold_45 . biological_region 89069 89069 0.999 - . logic_name=eponine scaffold_45 . biological_region 89081 89088 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 86041 87117 . + . ID=Physo108937;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450005;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 86041 87117 . + . ID=Physo108937;Parent=Physo108937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 86041 86135 . + . ID=Physo108937.1;Parent=Physo108937;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_45 . CDS 86063 86135 . + 0 ID=Physo108937;Parent=Physo108937;rank=1 scaffold_45 . CDS 86238 86298 . + 0 ID=Physo108937;Parent=Physo108937;rank=2 scaffold_45 . exon 86238 86298 . + . ID=Physo108937.2;Parent=Physo108937;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_45 . CDS 86381 86496 . + 0 ID=Physo108937;Parent=Physo108937;rank=3 scaffold_45 . exon 86381 86496 . + . ID=Physo108937.3;Parent=Physo108937;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 86576 86732 . + 0 ID=Physo108937;Parent=Physo108937;rank=4 scaffold_45 . exon 86576 86732 . + . ID=Physo108937.4;Parent=Physo108937;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_45 . CDS 86805 87117 . + 0 ID=Physo108937;Parent=Physo108937;rank=5 scaffold_45 . exon 86805 87117 . + . ID=Physo108937.5;Parent=Physo108937;constitutive=1;ensembl_phase=2;rank=5 scaffold_45 . exon 79599 79862 . + . ID=Physo136330.5;Parent=Physo136330;constitutive=1;rank=5 scaffold_45 ensembl protein_coding_gene 80247 81149 . - . ID=Physo136331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450022;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 80247 81149 . - . ID=Physo136331;Parent=Physo136331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 80247 81149 . - 0 ID=Physo136331;Parent=Physo136331;rank=1 scaffold_45 . exon 80247 81149 . - . ID=Physo136331.1;Parent=Physo136331;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 81742 83715 . - . ID=Physo136332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450023;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 81742 83715 . - . ID=Physo136332;Parent=Physo136332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 81742 83631 . - 0 ID=Physo136332;Parent=Physo136332;rank=1 scaffold_45 . exon 81742 83715 . - . ID=Physo136332.1;Parent=Physo136332;constitutive=1;ensembl_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 83715 85881 . - . ID=Physo136333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450024;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 83715 85881 . - . ID=Physo136333;Parent=Physo136333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 83715 84216 . - 0 ID=Physo136333;Parent=Physo136333;rank=7 scaffold_45 . exon 83715 84216 . - . ID=Physo136333.7;Parent=Physo136333;constitutive=1;ensembl_phase=2;rank=7 scaffold_45 . CDS 84300 84376 . - 0 ID=Physo136333;Parent=Physo136333;rank=6 scaffold_45 . exon 84300 84376 . - . ID=Physo136333.6;Parent=Physo136333;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_45 . CDS 84445 85132 . - 0 ID=Physo136333;Parent=Physo136333;rank=5 scaffold_45 . exon 84445 85132 . - . ID=Physo136333.5;Parent=Physo136333;constitutive=1;ensembl_phase=2;rank=5 scaffold_45 . CDS 85203 85236 . - 0 ID=Physo136333;Parent=Physo136333;rank=4 scaffold_45 . exon 85203 85236 . - . ID=Physo136333.4;Parent=Physo136333;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_45 . CDS 85337 85440 . - 0 ID=Physo136333;Parent=Physo136333;rank=3 scaffold_45 . exon 85337 85440 . - . ID=Physo136333.3;Parent=Physo136333;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 85533 85600 . - 0 ID=Physo136333;Parent=Physo136333;rank=2 scaffold_45 . exon 85533 85600 . - . ID=Physo136333.2;Parent=Physo136333;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 85680 85856 . - 0 ID=Physo136333;Parent=Physo136333;rank=1 scaffold_45 . exon 85680 85881 . - . ID=Physo136333.1;Parent=Physo136333;constitutive=1;ensembl_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 87226 88012 . - . ID=Physo157382;biotype=protein_coding;external_name=C_scaffold_45000005;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 87226 88012 . - . ID=Physo157382;Parent=Physo157382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 87226 87686 . - 0 ID=Physo157382;Parent=Physo157382;rank=3 scaffold_45 . exon 87226 87686 . - . ID=Physo157382.3;Parent=Physo157382;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 87752 87929 . - 0 ID=Physo157382;Parent=Physo157382;rank=2 scaffold_45 . exon 87752 87929 . - . ID=Physo157382.2;Parent=Physo157382;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 87998 88012 . - 0 ID=Physo157382;Parent=Physo157382;rank=1 scaffold_45 . exon 87998 88012 . - . ID=Physo157382.1;Parent=Physo157382;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 88160 89351 . + . ID=Physo157383;biotype=protein_coding;external_name=C_scaffold_45000006;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 88160 89351 . + . ID=Physo157383;Parent=Physo157383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 88160 88368 . + 0 ID=Physo157383;Parent=Physo157383;rank=1 scaffold_45 . exon 88160 88368 . + . ID=Physo157383.1;Parent=Physo157383;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 88469 88529 . + 0 ID=Physo157383;Parent=Physo157383;rank=2 scaffold_45 . exon 88469 88529 . + . ID=Physo157383.2;Parent=Physo157383;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 88653 89351 . + 0 ID=Physo157383;Parent=Physo157383;rank=3 scaffold_45 . exon 88653 89351 . + . ID=Physo157383.3;Parent=Physo157383;constitutive=1;rank=3 scaffold_45 ensembl protein_coding_gene 94615 95267 . - . ID=Physo136339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450030;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 94615 95267 . - . ID=Physo136339;Parent=Physo136339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 94615 94665 . - 0 ID=Physo136339;Parent=Physo136339;rank=4 scaffold_45 . exon 94615 94665 . - . ID=Physo136339.4;Parent=Physo136339;constitutive=1;rank=4 scaffold_45 . CDS 94736 94804 . - 0 ID=Physo136339;Parent=Physo136339;rank=3 scaffold_45 . exon 94736 94804 . - . ID=Physo136339.3;Parent=Physo136339;constitutive=1;rank=3 scaffold_45 . CDS 94995 95165 . - 0 ID=Physo136339;Parent=Physo136339;rank=2 scaffold_45 . exon 94995 95165 . - . ID=Physo136339.2;Parent=Physo136339;constitutive=1;rank=2 scaffold_45 . CDS 95229 95267 . - 0 ID=Physo136339;Parent=Physo136339;rank=1 scaffold_45 . exon 95229 95267 . - . ID=Physo136339.1;Parent=Physo136339;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 95679 96752 . + . ID=Physo136340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450031;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 95679 96752 . + . ID=Physo136340;Parent=Physo136340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 95679 96752 . + 0 ID=Physo136340;Parent=Physo136340;rank=1 scaffold_45 . exon 95679 96752 . + . ID=Physo136340.1;Parent=Physo136340;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 96971 98456 . + . ID=Physo136341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450032;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 96971 98456 . + . ID=Physo136341;Parent=Physo136341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 96971 97971 . + 0 ID=Physo136341;Parent=Physo136341;rank=1 scaffold_45 . exon 96971 97971 . + . ID=Physo136341.1;Parent=Physo136341;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 98048 98136 . + 0 ID=Physo136341;Parent=Physo136341;rank=2 scaffold_45 . exon 98048 98136 . + . ID=Physo136341.2;Parent=Physo136341;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 98218 98294 . + 0 ID=Physo136341;Parent=Physo136341;rank=3 scaffold_45 . exon 98218 98294 . + . ID=Physo136341.3;Parent=Physo136341;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 98367 98456 . + 0 ID=Physo136341;Parent=Physo136341;rank=4 scaffold_45 . exon 98367 98456 . + . ID=Physo136341.4;Parent=Physo136341;constitutive=1;rank=4 scaffold_45 ensembl protein_coding_gene 98906 101180 . + . ID=Physo136342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450033;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 98906 101180 . + . ID=Physo136342;Parent=Physo136342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 98906 100025 . + 0 ID=Physo136342;Parent=Physo136342;rank=1 scaffold_45 . exon 98906 100025 . + . ID=Physo136342.1;Parent=Physo136342;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 100089 100117 . + 0 ID=Physo136342;Parent=Physo136342;rank=2 scaffold_45 . CDS 100182 100333 . + 0 ID=Physo136342;Parent=Physo136342;rank=3 scaffold_45 . CDS 100399 101179 . + 0 ID=Physo136342;Parent=Physo136342;rank=4 scaffold_45 ensembl protein_coding_gene 89484 90616 . + . ID=Physo157385;biotype=protein_coding;external_name=C_scaffold_45000008;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 89484 90616 . + . ID=Physo157385;Parent=Physo157385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 89484 89638 . + 0 ID=Physo157385;Parent=Physo157385;rank=1 scaffold_45 . exon 89484 89638 . + . ID=Physo157385.1;Parent=Physo157385;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 89722 89786 . + 0 ID=Physo157385;Parent=Physo157385;rank=2 scaffold_45 . exon 89722 89786 . + . ID=Physo157385.2;Parent=Physo157385;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 89850 89950 . + 0 ID=Physo157385;Parent=Physo157385;rank=3 scaffold_45 . exon 89850 89950 . + . ID=Physo157385.3;Parent=Physo157385;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 90027 90200 . + 0 ID=Physo157385;Parent=Physo157385;rank=4 scaffold_45 . exon 90027 90200 . + . ID=Physo157385.4;Parent=Physo157385;constitutive=1;rank=4 scaffold_45 . CDS 90278 90616 . + 0 ID=Physo157385;Parent=Physo157385;rank=5 scaffold_45 . exon 90278 90616 . + . ID=Physo157385.5;Parent=Physo157385;constitutive=1;rank=5 scaffold_45 ensembl protein_coding_gene 90712 93181 . - . ID=Physo157388;biotype=protein_coding;external_name=C_scaffold_45000011;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 90712 93181 . - . ID=Physo157388;Parent=Physo157388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 90712 91275 . - 0 ID=Physo157388;Parent=Physo157388;rank=7 scaffold_45 . exon 90712 91275 . - . ID=Physo157388.7;Parent=Physo157388;constitutive=1;rank=7 scaffold_45 . CDS 91382 91590 . - 0 ID=Physo157388;Parent=Physo157388;rank=6 scaffold_45 . exon 91382 91590 . - . ID=Physo157388.6;Parent=Physo157388;constitutive=1;ensembl_phase=1;rank=6 scaffold_45 . CDS 91621 91821 . - 0 ID=Physo157388;Parent=Physo157388;rank=5 scaffold_45 . exon 91621 91821 . - . ID=Physo157388.5;Parent=Physo157388;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_45 . CDS 91882 91962 . - 0 ID=Physo157388;Parent=Physo157388;rank=4 scaffold_45 . exon 91882 91962 . - . ID=Physo157388.4;Parent=Physo157388;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 92131 92190 . - 0 ID=Physo157388;Parent=Physo157388;rank=3 scaffold_45 . exon 92131 92190 . - . ID=Physo157388.3;Parent=Physo157388;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 92527 92709 . - 0 ID=Physo157388;Parent=Physo157388;rank=2 scaffold_45 . exon 92527 92709 . - . ID=Physo157388.2;Parent=Physo157388;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 93028 93181 . - 0 ID=Physo157388;Parent=Physo157388;rank=1 scaffold_45 . exon 93028 93181 . - . ID=Physo157388.1;Parent=Physo157388;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . biological_region 103529 103534 0.999 - . logic_name=eponine scaffold_45 . repeat_region 104054 104140 . ? . description=dust scaffold_45 . repeat_region 104096 104140 . ? . description=trf scaffold_45 . repeat_region 104728 104801 . ? . description=dust scaffold_45 . repeat_region 104854 104949 . ? . description=dust scaffold_45 . repeat_region 104868 104909 . ? . description=trf scaffold_45 . biological_region 107112 107114 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 101378 102528 . - . ID=Physo108938;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450006;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 101378 102528 . - . ID=Physo108938;Parent=Physo108938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 101378 101615 . - 0 ID=Physo108938;Parent=Physo108938;rank=5 scaffold_45 . exon 101378 101615 . - . ID=Physo108938.5;Parent=Physo108938;constitutive=1;ensembl_phase=2;rank=5 scaffold_45 . CDS 101697 101814 . - 0 ID=Physo108938;Parent=Physo108938;rank=4 scaffold_45 . exon 101697 101814 . - . ID=Physo108938.4;Parent=Physo108938;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_45 . CDS 101851 101854 . - 0 ID=Physo108938;Parent=Physo108938;rank=3 scaffold_45 . exon 101851 101854 . - . ID=Physo108938.3;Parent=Physo108938;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . CDS 102010 102334 . - 0 ID=Physo108938;Parent=Physo108938;rank=2 scaffold_45 . exon 102010 102334 . - . ID=Physo108938.2;Parent=Physo108938;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 102416 102528 . - 0 ID=Physo108938;Parent=Physo108938;rank=1 scaffold_45 . exon 102416 102528 . - . ID=Physo108938.1;Parent=Physo108938;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 103458 103967 . + . ID=Physo117696;biotype=protein_coding;external_name=estExt_Genewise1.C_450090;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 103458 103967 . + . ID=Physo117696;Parent=Physo117696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 103458 103567 . + 0 ID=Physo117696;Parent=Physo117696;rank=1 scaffold_45 . exon 103458 103567 . + . ID=Physo117696.1;Parent=Physo117696;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 103591 103918 . + 0 ID=Physo117696;Parent=Physo117696;rank=2 scaffold_45 . exon 103591 103967 . + . ID=Physo117696.2;Parent=Physo117696;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_45 . exon 100089 100117 . + . ID=Physo136342.2;Parent=Physo136342;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . exon 100182 100333 . + . ID=Physo136342.3;Parent=Physo136342;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_45 . exon 100399 101180 . + . ID=Physo136342.4;Parent=Physo136342;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_45 ensembl protein_coding_gene 102641 102958 . - . ID=Physo136344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450035;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 102641 102958 . - . ID=Physo136344;Parent=Physo136344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 102641 102958 . - 0 ID=Physo136344;Parent=Physo136344;rank=1 scaffold_45 . exon 102641 102958 . - . ID=Physo136344.1;Parent=Physo136344;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 109742 113001 . - . ID=Physo136346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450037;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 109742 113001 . - . ID=Physo136346;Parent=Physo136346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 109742 111267 . - . ID=Physo136346.2;Parent=Physo136346;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_45 . CDS 110268 111267 . - 0 ID=Physo136346;Parent=Physo136346;rank=2 scaffold_45 . CDS 111383 113001 . - 0 ID=Physo136346;Parent=Physo136346;rank=1 scaffold_45 . exon 111383 113001 . - . ID=Physo136346.1;Parent=Physo136346;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 113325 114939 . - . ID=Physo136347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450038;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 113325 114939 . - . ID=Physo136347;Parent=Physo136347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 113325 114939 . - . ID=Physo136347.1;Parent=Physo136347;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_45 . CDS 113374 114939 . - 0 ID=Physo136347;Parent=Physo136347;rank=1 scaffold_45 ensembl protein_coding_gene 115374 115835 . + . ID=Physo136348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450039;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 115374 115835 . + . ID=Physo136348;Parent=Physo136348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 115374 115481 . + 0 ID=Physo136348;Parent=Physo136348;rank=1 scaffold_45 . exon 115374 115481 . + . ID=Physo136348.1;Parent=Physo136348;constitutive=1;rank=1 scaffold_45 . CDS 115552 115636 . + 0 ID=Physo136348;Parent=Physo136348;rank=2 scaffold_45 . exon 115552 115636 . + . ID=Physo136348.2;Parent=Physo136348;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 115711 115835 . + 0 ID=Physo136348;Parent=Physo136348;rank=3 scaffold_45 . exon 115711 115835 . + . ID=Physo136348.3;Parent=Physo136348;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 ensembl protein_coding_gene 115947 117758 . - . ID=Physo136349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450040;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 115947 117758 . - . ID=Physo136349;Parent=Physo136349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 115947 117758 . - 0 ID=Physo136349;Parent=Physo136349;rank=1 scaffold_45 . exon 115947 117758 . - . ID=Physo136349.1;Parent=Physo136349;constitutive=1;rank=1 scaffold_45 . repeat_region 119643 119652 . ? . description=dust scaffold_45 . biological_region 120110 120116 0.999 - . logic_name=eponine scaffold_45 . repeat_region 122382 122406 . ? . description=trf scaffold_45 . repeat_region 122808 122857 . ? . description=dust scaffold_45 . biological_region 123357 123359 0.999 - . logic_name=eponine scaffold_45 . biological_region 123433 123438 0.999 - . logic_name=eponine scaffold_45 . biological_region 124597 124601 0.999 + . logic_name=eponine scaffold_45 . repeat_region 126696 126704 . ? . description=dust scaffold_45 . repeat_region 127125 127195 . ? . description=trf scaffold_45 . repeat_region 127126 127218 . ? . description=dust scaffold_45 . repeat_region 127449 127551 . ? . description=trf scaffold_45 . repeat_region 127449 127588 . ? . description=trf scaffold_45 ensembl protein_coding_gene 119771 123450 . - . ID=Physo157391;biotype=protein_coding;external_name=C_scaffold_45000014;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 119771 123450 . - . ID=Physo157391;Parent=Physo157391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 119771 121481 . - 0 ID=Physo157391;Parent=Physo157391;rank=4 scaffold_45 . exon 119771 121481 . - . ID=Physo157391.4;Parent=Physo157391;constitutive=1;ensembl_phase=2;rank=4 scaffold_45 . CDS 121506 121720 . - 0 ID=Physo157391;Parent=Physo157391;rank=3 scaffold_45 . exon 121506 121720 . - . ID=Physo157391.3;Parent=Physo157391;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_45 . CDS 121754 122753 . - 0 ID=Physo157391;Parent=Physo157391;rank=2 scaffold_45 . exon 121754 122753 . - . ID=Physo157391.2;Parent=Physo157391;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 122873 123450 . - 0 ID=Physo157391;Parent=Physo157391;rank=1 scaffold_45 . exon 122873 123450 . - . ID=Physo157391.1;Parent=Physo157391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 138526 141767 . - . ID=Physo108939;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450007;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 138526 141767 . - . ID=Physo108939;Parent=Physo108939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 138526 138553 . - 0 ID=Physo108939;Parent=Physo108939;rank=3 scaffold_45 . exon 138526 138553 . - . ID=Physo108939.3;Parent=Physo108939;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 139728 140988 . - 0 ID=Physo108939;Parent=Physo108939;rank=2 scaffold_45 . CDS 141707 141767 . - 0 ID=Physo108939;Parent=Physo108939;rank=1 scaffold_45 . repeat_region 144368 144388 . ? . description=dust scaffold_45 . exon 139728 140988 . - . ID=Physo108939.2;Parent=Physo108939;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_45 . exon 141707 141767 . - . ID=Physo108939.1;Parent=Physo108939;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 145254 146840 . - . ID=Physo136352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450043;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 145254 146840 . - . ID=Physo136352;Parent=Physo136352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 145254 146840 . - 0 ID=Physo136352;Parent=Physo136352;rank=1 scaffold_45 . exon 145254 146840 . - . ID=Physo136352.1;Parent=Physo136352;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 152794 153054 . + . ID=Physo117706;biotype=protein_coding;external_name=estExt_Genewise1.C_450100;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 152794 153054 . + . ID=Physo117706;Parent=Physo117706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 152794 153054 . + . ID=Physo117706.1;Parent=Physo117706;constitutive=1;ensembl_phase=-1;rank=1 scaffold_45 . CDS 152833 153054 . + 0 ID=Physo117706;Parent=Physo117706;rank=1 scaffold_45 ensembl protein_coding_gene 149708 151490 . + . ID=Physo136353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450044;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 149708 151490 . + . ID=Physo136353;Parent=Physo136353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 149708 149745 . + 0 ID=Physo136353;Parent=Physo136353;rank=1 scaffold_45 . exon 149708 149745 . + . ID=Physo136353.1;Parent=Physo136353;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 149781 150954 . + 0 ID=Physo136353;Parent=Physo136353;rank=2 scaffold_45 . exon 149781 150954 . + . ID=Physo136353.2;Parent=Physo136353;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 151020 151088 . + 0 ID=Physo136353;Parent=Physo136353;rank=3 scaffold_45 . exon 151020 151088 . + . ID=Physo136353.3;Parent=Physo136353;constitutive=1;rank=3 scaffold_45 . CDS 151155 151490 . + 0 ID=Physo136353;Parent=Physo136353;rank=4 scaffold_45 . exon 151155 151490 . + . ID=Physo136353.4;Parent=Physo136353;constitutive=1;rank=4 scaffold_45 . repeat_region 158745 158752 . ? . description=dust scaffold_45 . repeat_region 158910 158951 . ? . description=dust scaffold_45 . repeat_region 163332 163366 . ? . description=trf scaffold_45 . repeat_region 164179 164186 . ? . description=dust scaffold_45 ensembl protein_coding_gene 158932 159997 . - . ID=Physo136354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450045;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 158932 159997 . - . ID=Physo136354;Parent=Physo136354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 158932 159018 . - . ID=Physo136354.2;Parent=Physo136354;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_45 . CDS 159006 159018 . - 0 ID=Physo136354;Parent=Physo136354;rank=2 scaffold_45 . CDS 159099 159997 . - 0 ID=Physo136354;Parent=Physo136354;rank=1 scaffold_45 . exon 159099 159997 . - . ID=Physo136354.1;Parent=Physo136354;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 164599 165789 . - . ID=Physo136355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450046;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 164599 165789 . - . ID=Physo136355;Parent=Physo136355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 164599 165789 . - 0 ID=Physo136355;Parent=Physo136355;rank=1 scaffold_45 . exon 164599 165789 . - . ID=Physo136355.1;Parent=Physo136355;constitutive=1;rank=1 scaffold_45 . biological_region 170835 170840 0.999 - . logic_name=eponine scaffold_45 . biological_region 170865 170867 0.999 + . logic_name=eponine scaffold_45 . biological_region 171256 171257 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 170729 172455 . + . ID=Physo136356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450047;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 170729 172455 . + . ID=Physo136356;Parent=Physo136356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 170729 172252 . + 0 ID=Physo136356;Parent=Physo136356;rank=1 scaffold_45 . exon 170729 172455 . + . ID=Physo136356.1;Parent=Physo136356;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 172497 173615 . - . ID=Physo136357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450048;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 172497 173615 . - . ID=Physo136357;Parent=Physo136357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 172497 173285 . - 0 ID=Physo136357;Parent=Physo136357;rank=3 scaffold_45 . exon 172497 173285 . - . ID=Physo136357.3;Parent=Physo136357;constitutive=1;rank=3 scaffold_45 . CDS 173387 173536 . - 0 ID=Physo136357;Parent=Physo136357;rank=2 scaffold_45 . exon 173387 173536 . - . ID=Physo136357.2;Parent=Physo136357;constitutive=1;rank=2 scaffold_45 . CDS 173613 173615 . - 0 ID=Physo136357;Parent=Physo136357;rank=1 scaffold_45 . exon 173613 173615 . - . ID=Physo136357.1;Parent=Physo136357;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 175335 176311 . + . ID=Physo136358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450049;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 175335 176311 . + . ID=Physo136358;Parent=Physo136358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 175335 175419 . + . ID=Physo136358.1;Parent=Physo136358;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_45 . CDS 175398 175419 . + 0 ID=Physo136358;Parent=Physo136358;rank=1 scaffold_45 . CDS 175504 175578 . + 0 ID=Physo136358;Parent=Physo136358;rank=2 scaffold_45 . exon 175504 175578 . + . ID=Physo136358.2;Parent=Physo136358;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 175656 175736 . + 0 ID=Physo136358;Parent=Physo136358;rank=3 scaffold_45 . exon 175656 175736 . + . ID=Physo136358.3;Parent=Physo136358;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 175812 175949 . + 0 ID=Physo136358;Parent=Physo136358;rank=4 scaffold_45 . exon 175812 175949 . + . ID=Physo136358.4;Parent=Physo136358;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 176022 176100 . + 0 ID=Physo136358;Parent=Physo136358;rank=5 scaffold_45 . exon 176022 176100 . + . ID=Physo136358.5;Parent=Physo136358;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_45 . CDS 176182 176311 . + 0 ID=Physo136358;Parent=Physo136358;rank=6 scaffold_45 . exon 176182 176311 . + . ID=Physo136358.6;Parent=Physo136358;constitutive=1;ensembl_phase=2;rank=6 scaffold_45 ensembl protein_coding_gene 180549 182159 . - . ID=Physo136359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450050;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 180549 182159 . - . ID=Physo136359;Parent=Physo136359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 180549 182159 . - . ID=Physo136359.1;Parent=Physo136359;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_45 . CDS 180583 182136 . - 0 ID=Physo136359;Parent=Physo136359;rank=1 scaffold_45 ensembl protein_coding_gene 182858 184495 . - . ID=Physo136360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450051;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 182858 184495 . - . ID=Physo136360;Parent=Physo136360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 182858 183028 . - 0 ID=Physo136360;Parent=Physo136360;rank=2 scaffold_45 . exon 182858 183028 . - . ID=Physo136360.2;Parent=Physo136360;constitutive=1;rank=2 scaffold_45 . CDS 183104 184495 . - 0 ID=Physo136360;Parent=Physo136360;rank=1 scaffold_45 . exon 183104 184495 . - . ID=Physo136360.1;Parent=Physo136360;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 185503 187147 . - . ID=Physo136361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450052;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 185503 187147 . - . ID=Physo136361;Parent=Physo136361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 185503 185519 . - 0 ID=Physo136361;Parent=Physo136361;rank=3 scaffold_45 . exon 185503 185519 . - . ID=Physo136361.3;Parent=Physo136361;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 185576 185702 . - 0 ID=Physo136361;Parent=Physo136361;rank=2 scaffold_45 . exon 185576 185702 . - . ID=Physo136361.2;Parent=Physo136361;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 185780 187147 . - 0 ID=Physo136361;Parent=Physo136361;rank=1 scaffold_45 . exon 185780 187147 . - . ID=Physo136361.1;Parent=Physo136361;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 187684 188169 . - . ID=Physo136362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450053;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 187684 188169 . - . ID=Physo136362;Parent=Physo136362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 187684 188169 . - 0 ID=Physo136362;Parent=Physo136362;rank=1 scaffold_45 . exon 187684 188169 . - . ID=Physo136362.1;Parent=Physo136362;constitutive=1;rank=1 scaffold_45 . biological_region 192892 192893 0.999 + . logic_name=eponine scaffold_45 . biological_region 194543 194544 0.999 + . logic_name=eponine scaffold_45 . biological_region 194562 194563 0.999 + . logic_name=eponine scaffold_45 . repeat_region 195941 195955 . ? . description=dust scaffold_45 . repeat_region 197193 197216 . ? . description=trf scaffold_45 . repeat_region 197374 197381 . ? . description=dust scaffold_45 . repeat_region 197710 197720 . ? . description=dust scaffold_45 ensembl protein_coding_gene 188900 189505 . - . ID=Physo136363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450054;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 188900 189505 . - . ID=Physo136363;Parent=Physo136363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 188900 189505 . - 0 ID=Physo136363;Parent=Physo136363;rank=1 scaffold_45 . exon 188900 189505 . - . ID=Physo136363.1;Parent=Physo136363;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 190290 192171 . - . ID=Physo136364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450055;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 190290 192171 . - . ID=Physo136364;Parent=Physo136364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 190290 190816 . - 0 ID=Physo136364;Parent=Physo136364;rank=3 scaffold_45 . exon 190290 190816 . - . ID=Physo136364.3;Parent=Physo136364;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 191032 191839 . - 0 ID=Physo136364;Parent=Physo136364;rank=2 scaffold_45 . exon 191032 191839 . - . ID=Physo136364.2;Parent=Physo136364;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 192163 192171 . - 0 ID=Physo136364;Parent=Physo136364;rank=1 scaffold_45 . exon 192163 192171 . - . ID=Physo136364.1;Parent=Physo136364;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 193575 195311 . - . ID=Physo136365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450056;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 193575 195311 . - . ID=Physo136365;Parent=Physo136365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 193575 195311 . - 0 ID=Physo136365;Parent=Physo136365;rank=1 scaffold_45 . exon 193575 195311 . - . ID=Physo136365.1;Parent=Physo136365;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 195964 197028 . - . ID=Physo136366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450057;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 195964 197028 . - . ID=Physo136366;Parent=Physo136366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 195964 197028 . - 0 ID=Physo136366;Parent=Physo136366;rank=1 scaffold_45 . exon 195964 197028 . - . ID=Physo136366.1;Parent=Physo136366;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 202270 203826 . + . ID=Physo136367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450058;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 202270 203826 . + . ID=Physo136367;Parent=Physo136367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 202270 203826 . + 0 ID=Physo136367;Parent=Physo136367;rank=1 scaffold_45 . exon 202270 203826 . + . ID=Physo136367.1;Parent=Physo136367;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 204583 205750 . + . ID=Physo136368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450059;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 204583 205750 . + . ID=Physo136368;Parent=Physo136368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 204583 204597 . + 0 ID=Physo136368;Parent=Physo136368;rank=1 scaffold_45 . exon 204583 204597 . + . ID=Physo136368.1;Parent=Physo136368;constitutive=1;rank=1 scaffold_45 . CDS 204956 205171 . + 0 ID=Physo136368;Parent=Physo136368;rank=2 scaffold_45 . exon 204956 205171 . + . ID=Physo136368.2;Parent=Physo136368;constitutive=1;rank=2 scaffold_45 . CDS 205258 205519 . + 0 ID=Physo136368;Parent=Physo136368;rank=3 scaffold_45 . exon 205258 205519 . + . ID=Physo136368.3;Parent=Physo136368;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . CDS 205734 205750 . + 0 ID=Physo136368;Parent=Physo136368;rank=4 scaffold_45 . exon 205734 205750 . + . ID=Physo136368.4;Parent=Physo136368;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . biological_region 208361 208365 0.999 + . logic_name=eponine scaffold_45 . biological_region 208609 208609 0.999 + . logic_name=eponine scaffold_45 . biological_region 212746 212750 0.999 - . logic_name=eponine scaffold_45 . biological_region 212820 212823 0.999 - . logic_name=eponine scaffold_45 . biological_region 213731 213734 0.999 + . logic_name=eponine scaffold_45 . repeat_region 214248 214329 . ? . description=dust scaffold_45 . repeat_region 214270 214329 . ? . description=trf scaffold_45 . repeat_region 214270 214329 . ? . description=trf scaffold_45 . repeat_region 214277 214326 . ? . description=trf scaffold_45 . repeat_region 216253 216275 . ? . description=dust scaffold_45 . repeat_region 216256 216275 . ? . description=trf scaffold_45 ensembl protein_coding_gene 212992 216321 . + . ID=Physo136369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450060;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 212992 216321 . + . ID=Physo136369;Parent=Physo136369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 212992 216321 . + 0 ID=Physo136369;Parent=Physo136369;rank=1 scaffold_45 . exon 212992 216321 . + . ID=Physo136369.1;Parent=Physo136369;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 217944 219112 . - . ID=Physo136370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450061;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 217944 219112 . - . ID=Physo136370;Parent=Physo136370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 217944 218228 . - 0 ID=Physo136370;Parent=Physo136370;rank=2 scaffold_45 . exon 217944 218228 . - . ID=Physo136370.2;Parent=Physo136370;constitutive=1;rank=2 scaffold_45 . CDS 218301 219098 . - 0 ID=Physo136370;Parent=Physo136370;rank=1 scaffold_45 . repeat_region 225512 225628 . + . description=(ATTCG)n scaffold_45 ensembl protein_coding_gene 222915 224352 . + . ID=Physo108940;biotype=protein_coding;description=MAP kinase [Source:UniProtKB/TrEMBL%3BAcc:B6V9Y6];external_name=estExt_fgenesh1_pm.C_450008;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 222915 224352 . + . ID=Physo108940;Parent=Physo108940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 222915 223058 . + 0 ID=Physo108940;Parent=Physo108940;rank=1 scaffold_45 . exon 222915 223058 . + . ID=Physo108940.1;Parent=Physo108940;constitutive=1;rank=1 scaffold_45 . CDS 223140 223265 . + 0 ID=Physo108940;Parent=Physo108940;rank=2 scaffold_45 . exon 223140 223265 . + . ID=Physo108940.2;Parent=Physo108940;constitutive=1;rank=2 scaffold_45 . CDS 223346 223906 . + 0 ID=Physo108940;Parent=Physo108940;rank=3 scaffold_45 . exon 223346 223906 . + . ID=Physo108940.3;Parent=Physo108940;constitutive=1;rank=3 scaffold_45 . CDS 223988 224128 . + 0 ID=Physo108940;Parent=Physo108940;rank=4 scaffold_45 . exon 223988 224128 . + . ID=Physo108940.4;Parent=Physo108940;constitutive=1;rank=4 scaffold_45 . CDS 224200 224352 . + 0 ID=Physo108940;Parent=Physo108940;rank=5 scaffold_45 . exon 224200 224352 . + . ID=Physo108940.5;Parent=Physo108940;constitutive=1;rank=5 scaffold_45 . exon 218301 219112 . - . ID=Physo136370.1;Parent=Physo136370;constitutive=1;ensembl_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 219375 220749 . + . ID=Physo136371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450062;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 219375 220749 . + . ID=Physo136371;Parent=Physo136371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 219375 219523 . + . ID=Physo136371.1;Parent=Physo136371;constitutive=1;ensembl_phase=-1;rank=1 scaffold_45 . CDS 219413 219523 . + 0 ID=Physo136371;Parent=Physo136371;rank=1 scaffold_45 . CDS 219604 219664 . + 0 ID=Physo136371;Parent=Physo136371;rank=2 scaffold_45 . exon 219604 219664 . + . ID=Physo136371.2;Parent=Physo136371;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 219740 219919 . + 0 ID=Physo136371;Parent=Physo136371;rank=3 scaffold_45 . exon 219740 219919 . + . ID=Physo136371.3;Parent=Physo136371;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 220005 220063 . + 0 ID=Physo136371;Parent=Physo136371;rank=4 scaffold_45 . exon 220005 220063 . + . ID=Physo136371.4;Parent=Physo136371;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 220146 220208 . + 0 ID=Physo136371;Parent=Physo136371;rank=5 scaffold_45 . exon 220146 220208 . + . ID=Physo136371.5;Parent=Physo136371;constitutive=1;rank=5 scaffold_45 . CDS 220285 220656 . + 0 ID=Physo136371;Parent=Physo136371;rank=6 scaffold_45 . exon 220285 220749 . + . ID=Physo136371.6;Parent=Physo136371;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_45 ensembl protein_coding_gene 222108 222680 . - . ID=Physo136372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450063;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 222108 222680 . - . ID=Physo136372;Parent=Physo136372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 222108 222680 . - 0 ID=Physo136372;Parent=Physo136372;rank=1 scaffold_45 . exon 222108 222680 . - . ID=Physo136372.1;Parent=Physo136372;constitutive=1;rank=1 scaffold_45 . repeat_region 232847 232871 . ? . description=dust scaffold_45 . repeat_region 232915 232936 . ? . description=dust scaffold_45 . repeat_region 232915 232936 . ? . description=trf scaffold_45 . biological_region 233885 233888 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 232135 233345 . - . ID=Physo136374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450065;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 232135 233345 . - . ID=Physo136374;Parent=Physo136374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 232135 232569 . - 0 ID=Physo136374;Parent=Physo136374;rank=2 scaffold_45 . exon 232135 232569 . - . ID=Physo136374.2;Parent=Physo136374;constitutive=1;rank=2 scaffold_45 . CDS 232650 233345 . - 0 ID=Physo136374;Parent=Physo136374;rank=1 scaffold_45 . exon 232650 233345 . - . ID=Physo136374.1;Parent=Physo136374;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 230320 231098 . - . ID=Physo157393;biotype=protein_coding;external_name=C_scaffold_45000016;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 230320 231098 . - . ID=Physo157393;Parent=Physo157393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 230320 230427 . - 0 ID=Physo157393;Parent=Physo157393;rank=3 scaffold_45 . exon 230320 230427 . - . ID=Physo157393.3;Parent=Physo157393;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_45 . CDS 230506 230851 . - 0 ID=Physo157393;Parent=Physo157393;rank=2 scaffold_45 . exon 230506 230851 . - . ID=Physo157393.2;Parent=Physo157393;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_45 . CDS 231041 231098 . - 0 ID=Physo157393;Parent=Physo157393;rank=1 scaffold_45 . exon 231041 231098 . - . ID=Physo157393.1;Parent=Physo157393;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 238331 240313 . + . ID=Physo108941;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450009;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 238331 240313 . + . ID=Physo108941;Parent=Physo108941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 238331 238467 . + . ID=Physo108941.1;Parent=Physo108941;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_45 . CDS 238391 238467 . + 0 ID=Physo108941;Parent=Physo108941;rank=1 scaffold_45 . CDS 238558 238810 . + 0 ID=Physo108941;Parent=Physo108941;rank=2 scaffold_45 . exon 238558 238810 . + . ID=Physo108941.2;Parent=Physo108941;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 238887 239315 . + 0 ID=Physo108941;Parent=Physo108941;rank=3 scaffold_45 . exon 238887 239315 . + . ID=Physo108941.3;Parent=Physo108941;constitutive=1;rank=3 scaffold_45 . CDS 239391 239474 . + 0 ID=Physo108941;Parent=Physo108941;rank=4 scaffold_45 . exon 239391 239474 . + . ID=Physo108941.4;Parent=Physo108941;constitutive=1;rank=4 scaffold_45 . CDS 239555 240313 . + 0 ID=Physo108941;Parent=Physo108941;rank=5 scaffold_45 . exon 239555 240313 . + . ID=Physo108941.5;Parent=Physo108941;constitutive=1;rank=5 scaffold_45 ensembl protein_coding_gene 242171 243607 . - . ID=Physo108942;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450010;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 242171 243607 . - . ID=Physo108942;Parent=Physo108942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 242171 242559 . - 0 ID=Physo108942;Parent=Physo108942;rank=3 scaffold_45 . exon 242171 242559 . - . ID=Physo108942.3;Parent=Physo108942;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 242609 242610 . - 0 ID=Physo108942;Parent=Physo108942;rank=2 scaffold_45 . exon 242609 242610 . - . ID=Physo108942.2;Parent=Physo108942;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 242919 243607 . - 0 ID=Physo108942;Parent=Physo108942;rank=1 scaffold_45 . exon 242919 243607 . - . ID=Physo108942.1;Parent=Physo108942;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . repeat_region 249997 250046 . ? . description=trf scaffold_45 . repeat_region 250881 250888 . ? . description=dust scaffold_45 . biological_region 253400 253400 0.999 + . logic_name=eponine scaffold_45 . biological_region 254330 254333 0.999 - . logic_name=eponine scaffold_45 . biological_region 254386 254391 0.999 + . logic_name=eponine scaffold_45 . biological_region 256675 256675 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 248752 249713 . - . ID=Physo117729;biotype=protein_coding;external_name=estExt_Genewise1.C_450123;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 248752 249713 . - . ID=Physo117729;Parent=Physo117729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 248752 248913 . - . ID=Physo117729.5;Parent=Physo117729;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_45 . CDS 248836 248913 . - 0 ID=Physo117729;Parent=Physo117729;rank=5 scaffold_45 . CDS 249000 249153 . - 0 ID=Physo117729;Parent=Physo117729;rank=4 scaffold_45 . exon 249000 249153 . - . ID=Physo117729.4;Parent=Physo117729;constitutive=1;ensembl_phase=2;rank=4 scaffold_45 . CDS 249215 249414 . - 0 ID=Physo117729;Parent=Physo117729;rank=3 scaffold_45 . exon 249215 249414 . - . ID=Physo117729.3;Parent=Physo117729;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_45 . CDS 249488 249585 . - 0 ID=Physo117729;Parent=Physo117729;rank=2 scaffold_45 . exon 249488 249585 . - . ID=Physo117729.2;Parent=Physo117729;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 249658 249712 . - 0 ID=Physo117729;Parent=Physo117729;rank=1 scaffold_45 . exon 249658 249713 . - . ID=Physo117729.1;Parent=Physo117729;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 252788 255356 . - . ID=Physo117732;biotype=protein_coding;external_name=estExt_Genewise1.C_450126;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 252788 255356 . - . ID=Physo117732;Parent=Physo117732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 252788 253121 . - 0 ID=Physo117732;Parent=Physo117732;rank=5 scaffold_45 . exon 252788 253121 . - . ID=Physo117732.5;Parent=Physo117732;constitutive=1;ensembl_phase=2;rank=5 scaffold_45 . CDS 253194 253286 . - 0 ID=Physo117732;Parent=Physo117732;rank=4 scaffold_45 . exon 253194 253286 . - . ID=Physo117732.4;Parent=Physo117732;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_45 . CDS 253509 253716 . - 0 ID=Physo117732;Parent=Physo117732;rank=3 scaffold_45 . exon 253509 253716 . - . ID=Physo117732.3;Parent=Physo117732;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_45 . CDS 253797 253962 . - 0 ID=Physo117732;Parent=Physo117732;rank=2 scaffold_45 . exon 253797 253962 . - . ID=Physo117732.2;Parent=Physo117732;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 254028 255335 . - 0 ID=Physo117732;Parent=Physo117732;rank=1 scaffold_45 . exon 254028 255356 . - . ID=Physo117732.1;Parent=Physo117732;constitutive=1;ensembl_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 255973 257098 . + . ID=Physo136378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450069;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 255973 257098 . + . ID=Physo136378;Parent=Physo136378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 255973 256002 . + 0 ID=Physo136378;Parent=Physo136378;rank=1 scaffold_45 . exon 255973 256002 . + . ID=Physo136378.1;Parent=Physo136378;constitutive=1;rank=1 scaffold_45 . CDS 256093 256883 . + 0 ID=Physo136378;Parent=Physo136378;rank=2 scaffold_45 . exon 256093 256883 . + . ID=Physo136378.2;Parent=Physo136378;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 257017 257098 . + 0 ID=Physo136378;Parent=Physo136378;rank=3 scaffold_45 . exon 257017 257098 . + . ID=Physo136378.3;Parent=Physo136378;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 ensembl protein_coding_gene 263606 264315 . - . ID=Physo136379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450070;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 263606 264315 . - . ID=Physo136379;Parent=Physo136379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 263606 264006 . - 0 ID=Physo136379;Parent=Physo136379;rank=2 scaffold_45 . exon 263606 264006 . - . ID=Physo136379.2;Parent=Physo136379;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 264075 264315 . - 0 ID=Physo136379;Parent=Physo136379;rank=1 scaffold_45 . exon 264075 264315 . - . ID=Physo136379.1;Parent=Physo136379;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 266186 269748 . + . ID=Physo136380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450071;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 266186 269748 . + . ID=Physo136380;Parent=Physo136380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 266186 266360 . + 0 ID=Physo136380;Parent=Physo136380;rank=1 scaffold_45 . exon 266186 266360 . + . ID=Physo136380.1;Parent=Physo136380;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 266463 266523 . + 0 ID=Physo136380;Parent=Physo136380;rank=2 scaffold_45 . exon 266463 266523 . + . ID=Physo136380.2;Parent=Physo136380;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_45 . CDS 266597 268877 . + 0 ID=Physo136380;Parent=Physo136380;rank=3 scaffold_45 . exon 266597 268877 . + . ID=Physo136380.3;Parent=Physo136380;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 268950 269100 . + 0 ID=Physo136380;Parent=Physo136380;rank=4 scaffold_45 . CDS 269168 269748 . + 0 ID=Physo136380;Parent=Physo136380;rank=5 scaffold_45 . biological_region 268063 268067 0.999 - . logic_name=eponine scaffold_45 . biological_region 271471 271476 0.999 + . logic_name=eponine scaffold_45 . biological_region 275164 275166 0.999 - . logic_name=eponine scaffold_45 . exon 268950 269100 . + . ID=Physo136380.4;Parent=Physo136380;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_45 . exon 269168 269748 . + . ID=Physo136380.5;Parent=Physo136380;constitutive=1;ensembl_phase=1;rank=5 scaffold_45 ensembl protein_coding_gene 269992 271590 . + . ID=Physo136381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450072;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 269992 271590 . + . ID=Physo136381;Parent=Physo136381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 269992 270692 . + 0 ID=Physo136381;Parent=Physo136381;rank=1 scaffold_45 . exon 269992 270692 . + . ID=Physo136381.1;Parent=Physo136381;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 271137 271590 . + 0 ID=Physo136381;Parent=Physo136381;rank=2 scaffold_45 . exon 271137 271590 . + . ID=Physo136381.2;Parent=Physo136381;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 ensembl protein_coding_gene 273581 283550 . + . ID=Physo157394;biotype=protein_coding;external_name=C_scaffold_45000017;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 273581 283550 . + . ID=Physo157394;Parent=Physo157394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 273581 274036 . + 0 ID=Physo157394;Parent=Physo157394;rank=1 scaffold_45 . exon 273581 274036 . + . ID=Physo157394.1;Parent=Physo157394;constitutive=1;rank=1 scaffold_45 . CDS 274073 279494 . + 0 ID=Physo157394;Parent=Physo157394;rank=2 scaffold_45 . exon 274073 279494 . + . ID=Physo157394.2;Parent=Physo157394;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 279519 280277 . + 0 ID=Physo157394;Parent=Physo157394;rank=3 scaffold_45 . CDS 280308 281657 . + 0 ID=Physo157394;Parent=Physo157394;rank=4 scaffold_45 . CDS 281721 283550 . + 0 ID=Physo157394;Parent=Physo157394;rank=5 scaffold_45 ensembl protein_coding_gene 283970 284386 . + . ID=Physo117608;biotype=protein_coding;external_name=estExt_Genewise1.C_450002;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 283970 284386 . + . ID=Physo117608;Parent=Physo117608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 283970 284386 . + 0 ID=Physo117608;Parent=Physo117608;rank=1 scaffold_45 . exon 283970 284386 . + . ID=Physo117608.1;Parent=Physo117608;constitutive=1;rank=1 scaffold_45 . exon 279519 280277 . + . ID=Physo157394.3;Parent=Physo157394;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_45 . exon 280308 281657 . + . ID=Physo157394.4;Parent=Physo157394;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_45 . exon 281721 283550 . + . ID=Physo157394.5;Parent=Physo157394;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_45 . biological_region 290146 290148 0.999 - . logic_name=eponine scaffold_45 . repeat_region 291652 291659 . ? . description=dust scaffold_45 . biological_region 292626 292629 0.999 - . logic_name=eponine scaffold_45 . biological_region 293484 293490 0.999 - . logic_name=eponine scaffold_45 . biological_region 294054 294057 0.999 - . logic_name=eponine scaffold_45 . biological_region 294236 294238 0.999 - . logic_name=eponine scaffold_45 . biological_region 294546 294548 0.999 + . logic_name=eponine scaffold_45 . biological_region 294692 294696 0.999 + . logic_name=eponine scaffold_45 . repeat_region 294785 294811 . ? . description=trf scaffold_45 . biological_region 295015 295017 0.999 - . logic_name=eponine scaffold_45 . repeat_region 295591 295652 . ? . description=dust scaffold_45 . biological_region 295697 295700 0.999 - . logic_name=eponine scaffold_45 . biological_region 297071 297071 0.999 + . logic_name=eponine scaffold_45 . biological_region 297441 297444 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 289818 290789 . + . ID=Physo136384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450075;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 289818 290789 . + . ID=Physo136384;Parent=Physo136384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 289818 290090 . + 0 ID=Physo136384;Parent=Physo136384;rank=1 scaffold_45 . exon 289818 290090 . + . ID=Physo136384.1;Parent=Physo136384;constitutive=1;rank=1 scaffold_45 . CDS 290120 290266 . + 0 ID=Physo136384;Parent=Physo136384;rank=2 scaffold_45 . exon 290120 290266 . + . ID=Physo136384.2;Parent=Physo136384;constitutive=1;rank=2 scaffold_45 . CDS 290475 290789 . + 0 ID=Physo136384;Parent=Physo136384;rank=3 scaffold_45 . exon 290475 290789 . + . ID=Physo136384.3;Parent=Physo136384;constitutive=1;rank=3 scaffold_45 ensembl protein_coding_gene 291873 292376 . + . ID=Physo136385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450076;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 291873 292376 . + . ID=Physo136385;Parent=Physo136385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 291873 292376 . + 0 ID=Physo136385;Parent=Physo136385;rank=1 scaffold_45 . exon 291873 292376 . + . ID=Physo136385.1;Parent=Physo136385;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 295149 297173 . + . ID=Physo136386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450077;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 295149 297173 . + . ID=Physo136386;Parent=Physo136386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 295149 296930 . + 0 ID=Physo136386;Parent=Physo136386;rank=1 scaffold_45 . exon 295149 297173 . + . ID=Physo136386.1;Parent=Physo136386;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 297419 299274 . + . ID=Physo136387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450078;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 297419 299274 . + . ID=Physo136387;Parent=Physo136387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 297419 298680 . + 0 ID=Physo136387;Parent=Physo136387;rank=1 scaffold_45 . exon 297419 298680 . + . ID=Physo136387.1;Parent=Physo136387;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 298752 298825 . + 0 ID=Physo136387;Parent=Physo136387;rank=2 scaffold_45 . CDS 298889 298999 . + 0 ID=Physo136387;Parent=Physo136387;rank=3 scaffold_45 . CDS 299141 299274 . + 0 ID=Physo136387;Parent=Physo136387;rank=4 scaffold_45 . exon 298752 298825 . + . ID=Physo136387.2;Parent=Physo136387;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_45 . exon 298889 298999 . + . ID=Physo136387.3;Parent=Physo136387;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_45 . exon 299141 299274 . + . ID=Physo136387.4;Parent=Physo136387;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 ensembl protein_coding_gene 302132 302437 . + . ID=Physo136388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450079;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 302132 302437 . + . ID=Physo136388;Parent=Physo136388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 302132 302437 . + 0 ID=Physo136388;Parent=Physo136388;rank=1 scaffold_45 . exon 302132 302437 . + . ID=Physo136388.1;Parent=Physo136388;constitutive=1;rank=1 scaffold_45 . biological_region 310319 310323 0.999 + . logic_name=eponine scaffold_45 . biological_region 310347 310349 0.999 + . logic_name=eponine scaffold_45 . repeat_region 314904 314945 . ? . description=trf scaffold_45 . biological_region 315046 315051 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 315677 324559 . + . ID=Physo108944;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450012;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 315677 324559 . + . ID=Physo108944;Parent=Physo108944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 315677 315701 . + 0 ID=Physo108944;Parent=Physo108944;rank=1 scaffold_45 . exon 315677 315701 . + . ID=Physo108944.1;Parent=Physo108944;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 317338 318404 . + 0 ID=Physo108944;Parent=Physo108944;rank=2 scaffold_45 . exon 317338 318404 . + . ID=Physo108944.2;Parent=Physo108944;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 318496 318732 . + 0 ID=Physo108944;Parent=Physo108944;rank=3 scaffold_45 . CDS 324527 324559 . + 0 ID=Physo108944;Parent=Physo108944;rank=4 scaffold_45 ensembl protein_coding_gene 316672 318518 . + . ID=Physo117617;biotype=protein_coding;external_name=estExt_Genewise1.C_450011;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 316672 318518 . + . ID=Physo117617;Parent=Physo117617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 316672 316839 . + . ID=Physo117617.1;Parent=Physo117617;constitutive=1;ensembl_phase=-1;rank=1 scaffold_45 . CDS 316768 316839 . + 0 ID=Physo117617;Parent=Physo117617;rank=1 scaffold_45 . CDS 316927 316971 . + 0 ID=Physo117617;Parent=Physo117617;rank=2 scaffold_45 . exon 316927 316971 . + . ID=Physo117617.2;Parent=Physo117617;constitutive=1;rank=2 scaffold_45 . CDS 317052 318518 . + 0 ID=Physo117617;Parent=Physo117617;rank=3 scaffold_45 . exon 317052 318518 . + . ID=Physo117617.3;Parent=Physo117617;constitutive=1;rank=3 scaffold_45 ensembl protein_coding_gene 307839 308990 . + . ID=Physo136389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450080;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 307839 308990 . + . ID=Physo136389;Parent=Physo136389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 307839 308990 . + 0 ID=Physo136389;Parent=Physo136389;rank=1 scaffold_45 . exon 307839 308990 . + . ID=Physo136389.1;Parent=Physo136389;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 311805 313088 . - . ID=Physo136390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450081;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 311805 313088 . - . ID=Physo136390;Parent=Physo136390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 311805 312362 . - 0 ID=Physo136390;Parent=Physo136390;rank=5 scaffold_45 . exon 311805 312362 . - . ID=Physo136390.5;Parent=Physo136390;constitutive=1;rank=5 scaffold_45 . CDS 312432 312520 . - 0 ID=Physo136390;Parent=Physo136390;rank=4 scaffold_45 . exon 312432 312520 . - . ID=Physo136390.4;Parent=Physo136390;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 312614 312792 . - 0 ID=Physo136390;Parent=Physo136390;rank=3 scaffold_45 . exon 312614 312792 . - . ID=Physo136390.3;Parent=Physo136390;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 312854 312951 . - 0 ID=Physo136390;Parent=Physo136390;rank=2 scaffold_45 . exon 312854 312951 . - . ID=Physo136390.2;Parent=Physo136390;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 312987 313088 . - 0 ID=Physo136390;Parent=Physo136390;rank=1 scaffold_45 . exon 312987 313088 . - . ID=Physo136390.1;Parent=Physo136390;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 314965 315523 . + . ID=Physo136391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450082;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 314965 315523 . + . ID=Physo136391;Parent=Physo136391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 314965 314972 . + 0 ID=Physo136391;Parent=Physo136391;rank=1 scaffold_45 . exon 314965 314972 . + . ID=Physo136391.1;Parent=Physo136391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 315075 315205 . + 0 ID=Physo136391;Parent=Physo136391;rank=2 scaffold_45 . exon 315075 315205 . + . ID=Physo136391.2;Parent=Physo136391;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 315287 315344 . + 0 ID=Physo136391;Parent=Physo136391;rank=3 scaffold_45 . exon 315287 315344 . + . ID=Physo136391.3;Parent=Physo136391;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_45 . CDS 315373 315460 . + 0 ID=Physo136391;Parent=Physo136391;rank=4 scaffold_45 . exon 315373 315523 . + . ID=Physo136391.4;Parent=Physo136391;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_45 . repeat_region 321944 321971 . ? . description=dust scaffold_45 . repeat_region 322317 322324 . ? . description=dust scaffold_45 . repeat_region 326953 326961 . ? . description=dust scaffold_45 . exon 318496 318732 . + . ID=Physo108944.3;Parent=Physo108944;constitutive=1;rank=3 scaffold_45 . exon 324527 324559 . + . ID=Physo108944.4;Parent=Physo108944;constitutive=1;rank=4 scaffold_45 ensembl protein_coding_gene 326993 328348 . - . ID=Physo136396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450087;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 326993 328348 . - . ID=Physo136396;Parent=Physo136396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 326993 328348 . - 0 ID=Physo136396;Parent=Physo136396;rank=1 scaffold_45 . exon 326993 328348 . - . ID=Physo136396.1;Parent=Physo136396;constitutive=1;rank=1 scaffold_45 . repeat_region 329198 329315 . ? . description=trf scaffold_45 . repeat_region 329371 329408 . ? . description=trf scaffold_45 . repeat_region 333463 333495 . ? . description=trf scaffold_45 . biological_region 333740 333741 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 330547 331248 . - . ID=Physo136397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450088;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 330547 331248 . - . ID=Physo136397;Parent=Physo136397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 330547 330582 . - 0 ID=Physo136397;Parent=Physo136397;rank=3 scaffold_45 . exon 330547 330582 . - . ID=Physo136397.3;Parent=Physo136397;constitutive=1;rank=3 scaffold_45 . CDS 330666 330811 . - 0 ID=Physo136397;Parent=Physo136397;rank=2 scaffold_45 . exon 330666 330811 . - . ID=Physo136397.2;Parent=Physo136397;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 330927 331248 . - 0 ID=Physo136397;Parent=Physo136397;rank=1 scaffold_45 . exon 330927 331248 . - . ID=Physo136397.1;Parent=Physo136397;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 335880 336334 . + . ID=Physo136398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450089;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 335880 336334 . + . ID=Physo136398;Parent=Physo136398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 335880 335938 . + 0 ID=Physo136398;Parent=Physo136398;rank=1 scaffold_45 . exon 335880 335938 . + . ID=Physo136398.1;Parent=Physo136398;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 336052 336334 . + 0 ID=Physo136398;Parent=Physo136398;rank=2 scaffold_45 . exon 336052 336334 . + . ID=Physo136398.2;Parent=Physo136398;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . repeat_region 338165 338214 . ? . description=dust scaffold_45 . repeat_region 340761 340779 . ? . description=dust scaffold_45 . repeat_region 341145 341155 . ? . description=dust scaffold_45 . repeat_region 341461 342415 . ? . description=dust scaffold_45 ensembl protein_coding_gene 345498 347646 . + . ID=Physo136399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450090;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 345498 347646 . + . ID=Physo136399;Parent=Physo136399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 345498 346730 . + 0 ID=Physo136399;Parent=Physo136399;rank=1 scaffold_45 . exon 345498 346730 . + . ID=Physo136399.1;Parent=Physo136399;constitutive=1;rank=1 scaffold_45 . CDS 346759 347320 . + 0 ID=Physo136399;Parent=Physo136399;rank=2 scaffold_45 . exon 346759 347320 . + . ID=Physo136399.2;Parent=Physo136399;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 347399 347646 . + 0 ID=Physo136399;Parent=Physo136399;rank=3 scaffold_45 . repeat_region 347751 347791 . ? . description=trf scaffold_45 . repeat_region 353443 353991 . + . description=GypsyPi-1c_I-int scaffold_45 . biological_region 354540 354543 0.999 + . logic_name=eponine scaffold_45 . repeat_region 354591 357537 . + . description=GypsyPi-1c_I-int scaffold_45 . biological_region 356974 356979 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 356073 359668 . + . ID=Physo108947;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450015;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 356073 359668 . + . ID=Physo108947;Parent=Physo108947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 356073 356183 . + 0 ID=Physo108947;Parent=Physo108947;rank=1 scaffold_45 . exon 356073 356183 . + . ID=Physo108947.1;Parent=Physo108947;constitutive=1;rank=1 scaffold_45 . CDS 356271 357104 . + 0 ID=Physo108947;Parent=Physo108947;rank=2 scaffold_45 . exon 356271 357104 . + . ID=Physo108947.2;Parent=Physo108947;constitutive=1;rank=2 scaffold_45 . CDS 357188 357201 . + 0 ID=Physo108947;Parent=Physo108947;rank=3 scaffold_45 . CDS 357237 357524 . + 0 ID=Physo108947;Parent=Physo108947;rank=4 scaffold_45 . CDS 358001 358123 . + 0 ID=Physo108947;Parent=Physo108947;rank=5 scaffold_45 . CDS 359638 359668 . + 0 ID=Physo108947;Parent=Physo108947;rank=6 scaffold_45 . exon 347399 347646 . + . ID=Physo136399.3;Parent=Physo136399;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 ensembl protein_coding_gene 353682 354993 . + . ID=Physo136400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450091;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 353682 354993 . + . ID=Physo136400;Parent=Physo136400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 353682 354422 . + 0 ID=Physo136400;Parent=Physo136400;rank=1 scaffold_45 . exon 353682 354422 . + . ID=Physo136400.1;Parent=Physo136400;constitutive=1;rank=1 scaffold_45 . CDS 354471 354992 . + 0 ID=Physo136400;Parent=Physo136400;rank=2 scaffold_45 . exon 354471 354993 . + . ID=Physo136400.2;Parent=Physo136400;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_45 . repeat_region 362416 362424 . ? . description=dust scaffold_45 . repeat_region 364729 364737 . ? . description=dust scaffold_45 . repeat_region 365604 365611 . ? . description=dust scaffold_45 . exon 357188 357201 . + . ID=Physo108947.3;Parent=Physo108947;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_45 . exon 357237 357524 . + . ID=Physo108947.4;Parent=Physo108947;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_45 . exon 358001 358123 . + . ID=Physo108947.5;Parent=Physo108947;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_45 . exon 359638 359668 . + . ID=Physo108947.6;Parent=Physo108947;constitutive=1;ensembl_phase=2;rank=6 scaffold_45 ensembl protein_coding_gene 365849 374081 . - . ID=Physo108948;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450016;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 365849 374081 . - . ID=Physo108948;Parent=Physo108948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 365849 366952 . - 0 ID=Physo108948;Parent=Physo108948;rank=7 scaffold_45 . exon 365849 366952 . - . ID=Physo108948.7;Parent=Physo108948;constitutive=1;rank=7 scaffold_45 . CDS 367022 367857 . - 0 ID=Physo108948;Parent=Physo108948;rank=6 scaffold_45 . CDS 367912 369351 . - 0 ID=Physo108948;Parent=Physo108948;rank=5 scaffold_45 . CDS 369418 372160 . - 0 ID=Physo108948;Parent=Physo108948;rank=4 scaffold_45 . CDS 372195 372591 . - 0 ID=Physo108948;Parent=Physo108948;rank=3 scaffold_45 . CDS 372775 373685 . - 0 ID=Physo108948;Parent=Physo108948;rank=2 scaffold_45 . CDS 373767 374081 . - 0 ID=Physo108948;Parent=Physo108948;rank=1 scaffold_45 . biological_region 376366 376367 0.999 + . logic_name=eponine scaffold_45 . exon 367022 367857 . - . ID=Physo108948.6;Parent=Physo108948;constitutive=1;ensembl_phase=1;rank=6 scaffold_45 . exon 367912 369351 . - . ID=Physo108948.5;Parent=Physo108948;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_45 . exon 369418 372160 . - . ID=Physo108948.4;Parent=Physo108948;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_45 . exon 372195 372591 . - . ID=Physo108948.3;Parent=Physo108948;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 . exon 372775 373685 . - . ID=Physo108948.2;Parent=Physo108948;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . exon 373767 374081 . - . ID=Physo108948.1;Parent=Physo108948;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 374204 380351 . - . ID=Physo136404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450095;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 374204 380351 . - . ID=Physo136404;Parent=Physo136404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 374204 380351 . - . ID=Physo136404.1;Parent=Physo136404;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_45 . CDS 374205 380351 . - 0 ID=Physo136404;Parent=Physo136404;rank=1 scaffold_45 . repeat_region 381721 381812 . ? . description=trf scaffold_45 . repeat_region 381721 381814 . ? . description=trf scaffold_45 . repeat_region 382500 382510 . ? . description=dust scaffold_45 ensembl protein_coding_gene 383545 383943 . + . ID=Physo136405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450096;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 383545 383943 . + . ID=Physo136405;Parent=Physo136405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 383545 383943 . + 0 ID=Physo136405;Parent=Physo136405;rank=1 scaffold_45 . exon 383545 383943 . + . ID=Physo136405.1;Parent=Physo136405;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 384277 386376 . - . ID=Physo136406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450097;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 384277 386376 . - . ID=Physo136406;Parent=Physo136406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 384277 385131 . - 0 ID=Physo136406;Parent=Physo136406;rank=7 scaffold_45 . exon 384277 385131 . - . ID=Physo136406.7;Parent=Physo136406;constitutive=1;rank=7 scaffold_45 . CDS 385205 385333 . - 0 ID=Physo136406;Parent=Physo136406;rank=6 scaffold_45 . exon 385205 385333 . - . ID=Physo136406.6;Parent=Physo136406;constitutive=1;rank=6 scaffold_45 . CDS 385426 385488 . - 0 ID=Physo136406;Parent=Physo136406;rank=5 scaffold_45 . exon 385426 385488 . - . ID=Physo136406.5;Parent=Physo136406;constitutive=1;rank=5 scaffold_45 . CDS 385562 385634 . - 0 ID=Physo136406;Parent=Physo136406;rank=4 scaffold_45 . exon 385562 385634 . - . ID=Physo136406.4;Parent=Physo136406;constitutive=1;ensembl_phase=2;rank=4 scaffold_45 . CDS 385712 385782 . - 0 ID=Physo136406;Parent=Physo136406;rank=3 scaffold_45 . exon 385712 385782 . - . ID=Physo136406.3;Parent=Physo136406;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_45 . CDS 385856 385966 . - 0 ID=Physo136406;Parent=Physo136406;rank=2 scaffold_45 . exon 385856 385966 . - . ID=Physo136406.2;Parent=Physo136406;constitutive=1;rank=2 scaffold_45 . CDS 386041 386376 . - 0 ID=Physo136406;Parent=Physo136406;rank=1 scaffold_45 . exon 386041 386376 . - . ID=Physo136406.1;Parent=Physo136406;constitutive=1;rank=1 scaffold_45 . biological_region 389484 389485 0.999 - . logic_name=eponine scaffold_45 . biological_region 389982 389987 0.999 + . logic_name=eponine scaffold_45 . biological_region 392702 392712 0.999 + . logic_name=eponine scaffold_45 . biological_region 393345 393348 0.999 - . logic_name=eponine scaffold_45 . biological_region 393523 393525 0.999 + . logic_name=eponine scaffold_45 . biological_region 393599 393600 0.999 - . logic_name=eponine scaffold_45 . biological_region 394865 394866 0.999 + . logic_name=eponine scaffold_45 . biological_region 395648 395650 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 387193 388710 . - . ID=Physo136407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450098;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 387193 388710 . - . ID=Physo136407;Parent=Physo136407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 387193 387198 . - 0 ID=Physo136407;Parent=Physo136407;rank=2 scaffold_45 . exon 387193 387198 . - . ID=Physo136407.2;Parent=Physo136407;constitutive=1;rank=2 scaffold_45 . CDS 387406 388710 . - 0 ID=Physo136407;Parent=Physo136407;rank=1 scaffold_45 . exon 387406 388710 . - . ID=Physo136407.1;Parent=Physo136407;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 389033 390607 . - . ID=Physo136408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450099;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 389033 390607 . - . ID=Physo136408;Parent=Physo136408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 389033 390607 . - 0 ID=Physo136408;Parent=Physo136408;rank=1 scaffold_45 . exon 389033 390607 . - . ID=Physo136408.1;Parent=Physo136408;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 391695 392407 . - . ID=Physo136409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450100;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 391695 392407 . - . ID=Physo136409;Parent=Physo136409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 391695 391709 . - 0 ID=Physo136409;Parent=Physo136409;rank=3 scaffold_45 . exon 391695 391709 . - . ID=Physo136409.3;Parent=Physo136409;constitutive=1;rank=3 scaffold_45 . CDS 391730 392197 . - 0 ID=Physo136409;Parent=Physo136409;rank=2 scaffold_45 . exon 391730 392197 . - . ID=Physo136409.2;Parent=Physo136409;constitutive=1;rank=2 scaffold_45 . CDS 392257 392295 . - 0 ID=Physo136409;Parent=Physo136409;rank=1 scaffold_45 . exon 392257 392407 . - . ID=Physo136409.1;Parent=Physo136409;constitutive=1;ensembl_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 392527 395262 . + . ID=Physo136410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450101;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 392527 395262 . + . ID=Physo136410;Parent=Physo136410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 392527 395262 . + 0 ID=Physo136410;Parent=Physo136410;rank=1 scaffold_45 . exon 392527 395262 . + . ID=Physo136410.1;Parent=Physo136410;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 395562 396023 . - . ID=Physo136411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450102;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 395562 396023 . - . ID=Physo136411;Parent=Physo136411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 395562 396023 . - 0 ID=Physo136411;Parent=Physo136411;rank=1 scaffold_45 . exon 395562 396023 . - . ID=Physo136411.1;Parent=Physo136411;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 396647 397045 . - . ID=Physo136412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450103;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 396647 397045 . - . ID=Physo136412;Parent=Physo136412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 396647 397045 . - 0 ID=Physo136412;Parent=Physo136412;rank=1 scaffold_45 . exon 396647 397045 . - . ID=Physo136412.1;Parent=Physo136412;constitutive=1;rank=1 scaffold_45 . repeat_region 400332 400348 . ? . description=dust scaffold_45 . repeat_region 404432 404441 . ? . description=dust scaffold_45 ensembl protein_coding_gene 397669 398067 . - . ID=Physo136413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450104;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 397669 398067 . - . ID=Physo136413;Parent=Physo136413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 397669 398067 . - 0 ID=Physo136413;Parent=Physo136413;rank=1 scaffold_45 . exon 397669 398067 . - . ID=Physo136413.1;Parent=Physo136413;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 398691 399089 . - . ID=Physo136414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450105;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 398691 399089 . - . ID=Physo136414;Parent=Physo136414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 398691 399089 . - 0 ID=Physo136414;Parent=Physo136414;rank=1 scaffold_45 . exon 398691 399089 . - . ID=Physo136414.1;Parent=Physo136414;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 404778 405191 . + . ID=Physo136416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450107;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 404778 405191 . + . ID=Physo136416;Parent=Physo136416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 404778 405191 . + 0 ID=Physo136416;Parent=Physo136416;rank=1 scaffold_45 . exon 404778 405191 . + . ID=Physo136416.1;Parent=Physo136416;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 399938 404403 . - . ID=Physo157395;biotype=protein_coding;external_name=C_scaffold_45000018;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 399938 404403 . - . ID=Physo157395;Parent=Physo157395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 399938 400310 . - 0 ID=Physo157395;Parent=Physo157395;rank=11 scaffold_45 . exon 399938 400310 . - . ID=Physo157395.11;Parent=Physo157395;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_45 . CDS 400696 401045 . - 0 ID=Physo157395;Parent=Physo157395;rank=10 scaffold_45 . exon 400696 401045 . - . ID=Physo157395.10;Parent=Physo157395;constitutive=1;ensembl_phase=1;rank=10 scaffold_45 . CDS 401178 402201 . - 0 ID=Physo157395;Parent=Physo157395;rank=9 scaffold_45 . exon 401178 402201 . - . ID=Physo157395.9;Parent=Physo157395;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_45 . CDS 402269 402460 . - 0 ID=Physo157395;Parent=Physo157395;rank=8 scaffold_45 . exon 402269 402460 . - . ID=Physo157395.8;Parent=Physo157395;constitutive=1;rank=8 scaffold_45 . CDS 402527 402617 . - 0 ID=Physo157395;Parent=Physo157395;rank=7 scaffold_45 . exon 402527 402617 . - . ID=Physo157395.7;Parent=Physo157395;constitutive=1;ensembl_phase=2;rank=7 scaffold_45 . CDS 402693 402779 . - 0 ID=Physo157395;Parent=Physo157395;rank=6 scaffold_45 . exon 402693 402779 . - . ID=Physo157395.6;Parent=Physo157395;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_45 . CDS 402850 403085 . - 0 ID=Physo157395;Parent=Physo157395;rank=5 scaffold_45 . exon 402850 403085 . - . ID=Physo157395.5;Parent=Physo157395;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_45 . CDS 403157 403323 . - 0 ID=Physo157395;Parent=Physo157395;rank=4 scaffold_45 . exon 403157 403323 . - . ID=Physo157395.4;Parent=Physo157395;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 403791 403991 . - 0 ID=Physo157395;Parent=Physo157395;rank=3 scaffold_45 . exon 403791 403991 . - . ID=Physo157395.3;Parent=Physo157395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 404104 404193 . - 0 ID=Physo157395;Parent=Physo157395;rank=2 scaffold_45 . exon 404104 404193 . - . ID=Physo157395.2;Parent=Physo157395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 404400 404403 . - 0 ID=Physo157395;Parent=Physo157395;rank=1 scaffold_45 . exon 404400 404403 . - . ID=Physo157395.1;Parent=Physo157395;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . repeat_region 407100 407144 . ? . description=trf scaffold_45 . biological_region 413234 413237 0.999 - . logic_name=eponine scaffold_45 . biological_region 413582 413583 0.999 + . logic_name=eponine scaffold_45 . repeat_region 415325 415369 . ? . description=trf scaffold_45 ensembl protein_coding_gene 413003 413416 . + . ID=Physo108949;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450017;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 413003 413416 . + . ID=Physo108949;Parent=Physo108949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 413003 413416 . + 0 ID=Physo108949;Parent=Physo108949;rank=1 scaffold_45 . exon 413003 413416 . + . ID=Physo108949.1;Parent=Physo108949;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 410599 411271 . - . ID=Physo117640;biotype=protein_coding;external_name=estExt_Genewise1.C_450034;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 410599 411271 . - . ID=Physo117640;Parent=Physo117640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 410599 410685 . - 0 ID=Physo117640;Parent=Physo117640;rank=4 scaffold_45 . exon 410599 410685 . - . ID=Physo117640.4;Parent=Physo117640;constitutive=1;rank=4 scaffold_45 . CDS 410752 410842 . - 0 ID=Physo117640;Parent=Physo117640;rank=3 scaffold_45 . exon 410752 410842 . - . ID=Physo117640.3;Parent=Physo117640;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 . CDS 410918 411004 . - 0 ID=Physo117640;Parent=Physo117640;rank=2 scaffold_45 . exon 410918 411004 . - . ID=Physo117640.2;Parent=Physo117640;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_45 . CDS 411075 411142 . - 0 ID=Physo117640;Parent=Physo117640;rank=1 scaffold_45 . exon 411075 411271 . - . ID=Physo117640.1;Parent=Physo117640;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_45 ensembl protein_coding_gene 407077 407701 . - . ID=Physo136417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450108;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 407077 407701 . - . ID=Physo136417;Parent=Physo136417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 407077 407150 . - 0 ID=Physo136417;Parent=Physo136417;rank=2 scaffold_45 . exon 407077 407150 . - . ID=Physo136417.2;Parent=Physo136417;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 407347 407701 . - 0 ID=Physo136417;Parent=Physo136417;rank=1 scaffold_45 . exon 407347 407701 . - . ID=Physo136417.1;Parent=Physo136417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 413529 413996 . + . ID=Physo136420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450111;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 413529 413996 . + . ID=Physo136420;Parent=Physo136420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 413529 413996 . + 0 ID=Physo136420;Parent=Physo136420;rank=1 scaffold_45 . exon 413529 413996 . + . ID=Physo136420.1;Parent=Physo136420;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 415966 416955 . - . ID=Physo136421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450112;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 415966 416955 . - . ID=Physo136421;Parent=Physo136421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 415966 416514 . - 0 ID=Physo136421;Parent=Physo136421;rank=2 scaffold_45 . exon 415966 416514 . - . ID=Physo136421.2;Parent=Physo136421;constitutive=1;rank=2 scaffold_45 . CDS 416575 416955 . - 0 ID=Physo136421;Parent=Physo136421;rank=1 scaffold_45 ensembl protein_coding_gene 425770 426432 . + . ID=Physo108950;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450018;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 425770 426432 . + . ID=Physo108950;Parent=Physo108950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 425770 426200 . + 0 ID=Physo108950;Parent=Physo108950;rank=1 scaffold_45 . exon 425770 426200 . + . ID=Physo108950.1;Parent=Physo108950;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 426316 426430 . + 0 ID=Physo108950;Parent=Physo108950;rank=2 scaffold_45 . exon 426316 426432 . + . ID=Physo108950.2;Parent=Physo108950;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_45 . exon 416575 416955 . - . ID=Physo136421.1;Parent=Physo136421;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 421552 424662 . - . ID=Physo136422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450113;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 421552 424662 . - . ID=Physo136422;Parent=Physo136422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 421552 424662 . - 0 ID=Physo136422;Parent=Physo136422;rank=1 scaffold_45 . exon 421552 424662 . - . ID=Physo136422.1;Parent=Physo136422;constitutive=1;rank=1 scaffold_45 . biological_region 428179 428183 0.999 - . logic_name=eponine scaffold_45 . biological_region 429223 429227 0.999 + . logic_name=eponine scaffold_45 . repeat_region 434936 434963 . ? . description=dust scaffold_45 . repeat_region 435038 435045 . ? . description=dust scaffold_45 ensembl protein_coding_gene 427039 429558 . + . ID=Physo136424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450115;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 427039 429558 . + . ID=Physo136424;Parent=Physo136424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 427039 427095 . + 0 ID=Physo136424;Parent=Physo136424;rank=1 scaffold_45 . exon 427039 427095 . + . ID=Physo136424.1;Parent=Physo136424;constitutive=1;rank=1 scaffold_45 . CDS 427258 429558 . + 0 ID=Physo136424;Parent=Physo136424;rank=2 scaffold_45 . exon 427258 429558 . + . ID=Physo136424.2;Parent=Physo136424;constitutive=1;rank=2 scaffold_45 ensembl protein_coding_gene 429833 431889 . + . ID=Physo136425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450116;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 429833 431889 . + . ID=Physo136425;Parent=Physo136425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 429833 430041 . + 0 ID=Physo136425;Parent=Physo136425;rank=1 scaffold_45 . exon 429833 430041 . + . ID=Physo136425.1;Parent=Physo136425;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 . CDS 430113 430215 . + 0 ID=Physo136425;Parent=Physo136425;rank=2 scaffold_45 . exon 430113 430215 . + . ID=Physo136425.2;Parent=Physo136425;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 430298 430911 . + 0 ID=Physo136425;Parent=Physo136425;rank=3 scaffold_45 . exon 430298 430911 . + . ID=Physo136425.3;Parent=Physo136425;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_45 . CDS 430976 431066 . + 0 ID=Physo136425;Parent=Physo136425;rank=4 scaffold_45 . exon 430976 431066 . + . ID=Physo136425.4;Parent=Physo136425;constitutive=1;ensembl_phase=2;rank=4 scaffold_45 . CDS 431129 431203 . + 0 ID=Physo136425;Parent=Physo136425;rank=5 scaffold_45 . exon 431129 431203 . + . ID=Physo136425.5;Parent=Physo136425;constitutive=1;rank=5 scaffold_45 . CDS 431332 431495 . + 0 ID=Physo136425;Parent=Physo136425;rank=6 scaffold_45 . exon 431332 431495 . + . ID=Physo136425.6;Parent=Physo136425;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_45 . CDS 431566 431591 . + 0 ID=Physo136425;Parent=Physo136425;rank=7 scaffold_45 . exon 431566 431591 . + . ID=Physo136425.7;Parent=Physo136425;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_45 . CDS 431620 431628 . + 0 ID=Physo136425;Parent=Physo136425;rank=8 scaffold_45 . exon 431620 431628 . + . ID=Physo136425.8;Parent=Physo136425;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_45 . CDS 431825 431889 . + 0 ID=Physo136425;Parent=Physo136425;rank=9 scaffold_45 . exon 431825 431889 . + . ID=Physo136425.9;Parent=Physo136425;constitutive=1;ensembl_phase=1;rank=9 scaffold_45 ensembl protein_coding_gene 435223 435669 . - . ID=Physo136426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450117;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 435223 435669 . - . ID=Physo136426;Parent=Physo136426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 435223 435669 . - 0 ID=Physo136426;Parent=Physo136426;rank=1 scaffold_45 . exon 435223 435669 . - . ID=Physo136426.1;Parent=Physo136426;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 438120 438987 . + . ID=Physo117650;biotype=protein_coding;external_name=estExt_Genewise1.C_450044;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 438120 438987 . + . ID=Physo117650;Parent=Physo117650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 438120 438430 . + . ID=Physo117650.1;Parent=Physo117650;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_45 . CDS 438345 438430 . + 0 ID=Physo117650;Parent=Physo117650;rank=1 scaffold_45 . CDS 438468 438987 . + 0 ID=Physo117650;Parent=Physo117650;rank=2 scaffold_45 . exon 438468 438987 . + . ID=Physo117650.2;Parent=Physo117650;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 ensembl protein_coding_gene 439837 440169 . - . ID=Physo136427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450118;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 439837 440169 . - . ID=Physo136427;Parent=Physo136427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 439837 440169 . - 0 ID=Physo136427;Parent=Physo136427;rank=1 scaffold_45 . exon 439837 440169 . - . ID=Physo136427.1;Parent=Physo136427;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 440524 440988 . - . ID=Physo136428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450119;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 440524 440988 . - . ID=Physo136428;Parent=Physo136428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 440524 440988 . - 0 ID=Physo136428;Parent=Physo136428;rank=1 scaffold_45 . exon 440524 440988 . - . ID=Physo136428.1;Parent=Physo136428;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 444748 445146 . - . ID=Physo136429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450120;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 444748 445146 . - . ID=Physo136429;Parent=Physo136429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 444748 445146 . - 0 ID=Physo136429;Parent=Physo136429;rank=1 scaffold_45 . exon 444748 445146 . - . ID=Physo136429.1;Parent=Physo136429;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 446099 446611 . - . ID=Physo136430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450121;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 446099 446611 . - . ID=Physo136430;Parent=Physo136430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 446099 446611 . - 0 ID=Physo136430;Parent=Physo136430;rank=1 scaffold_45 . exon 446099 446611 . - . ID=Physo136430.1;Parent=Physo136430;constitutive=1;rank=1 scaffold_45 . repeat_region 448834 448841 . ? . description=dust scaffold_45 . repeat_region 452036 452044 . ? . description=dust scaffold_45 . biological_region 453535 453537 0.999 + . logic_name=eponine scaffold_45 . biological_region 454123 454124 0.999 + . logic_name=eponine scaffold_45 . biological_region 454230 454232 0.999 - . logic_name=eponine scaffold_45 . biological_region 454543 454546 0.999 - . logic_name=eponine scaffold_45 . repeat_region 455034 455084 . ? . description=trf scaffold_45 . biological_region 455340 455342 0.999 + . logic_name=eponine scaffold_45 . biological_region 455363 455367 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 450477 451010 . - . ID=Physo136431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450122;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 450477 451010 . - . ID=Physo136431;Parent=Physo136431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 450477 450910 . - 0 ID=Physo136431;Parent=Physo136431;rank=2 scaffold_45 . exon 450477 450910 . - . ID=Physo136431.2;Parent=Physo136431;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 450932 451010 . - 0 ID=Physo136431;Parent=Physo136431;rank=1 scaffold_45 . exon 450932 451010 . - . ID=Physo136431.1;Parent=Physo136431;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 451398 451874 . - . ID=Physo136432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450123;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 451398 451874 . - . ID=Physo136432;Parent=Physo136432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 451398 451661 . - 0 ID=Physo136432;Parent=Physo136432;rank=2 scaffold_45 . exon 451398 451661 . - . ID=Physo136432.2;Parent=Physo136432;constitutive=1;rank=2 scaffold_45 . CDS 451752 451874 . - 0 ID=Physo136432;Parent=Physo136432;rank=1 scaffold_45 . exon 451752 451874 . - . ID=Physo136432.1;Parent=Physo136432;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 452801 453271 . - . ID=Physo136433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450124;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 452801 453271 . - . ID=Physo136433;Parent=Physo136433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 452801 453271 . - 0 ID=Physo136433;Parent=Physo136433;rank=1 scaffold_45 . exon 452801 453271 . - . ID=Physo136433.1;Parent=Physo136433;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 453513 454580 . - . ID=Physo136434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450125;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 453513 454580 . - . ID=Physo136434;Parent=Physo136434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 453513 454580 . - 0 ID=Physo136434;Parent=Physo136434;rank=1 scaffold_45 . exon 453513 454580 . - . ID=Physo136434.1;Parent=Physo136434;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 455041 456240 . - . ID=Physo136435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450126;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 455041 456240 . - . ID=Physo136435;Parent=Physo136435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 455041 456240 . - 0 ID=Physo136435;Parent=Physo136435;rank=1 scaffold_45 . exon 455041 456240 . - . ID=Physo136435.1;Parent=Physo136435;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 457592 459437 . + . ID=Physo136436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450127;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 457592 459437 . + . ID=Physo136436;Parent=Physo136436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 457592 457610 . + 0 ID=Physo136436;Parent=Physo136436;rank=1 scaffold_45 . exon 457592 457610 . + . ID=Physo136436.1;Parent=Physo136436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 458038 459437 . + 0 ID=Physo136436;Parent=Physo136436;rank=2 scaffold_45 . exon 458038 459437 . + . ID=Physo136436.2;Parent=Physo136436;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 ensembl protein_coding_gene 459824 461912 . + . ID=Physo136437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450128;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 459824 461912 . + . ID=Physo136437;Parent=Physo136437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 459824 460315 . + 0 ID=Physo136437;Parent=Physo136437;rank=1 scaffold_45 . exon 459824 460315 . + . ID=Physo136437.1;Parent=Physo136437;constitutive=1;rank=1 scaffold_45 . CDS 460385 460517 . + 0 ID=Physo136437;Parent=Physo136437;rank=2 scaffold_45 . exon 460385 460517 . + . ID=Physo136437.2;Parent=Physo136437;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_45 . CDS 460591 460673 . + 0 ID=Physo136437;Parent=Physo136437;rank=3 scaffold_45 . exon 460591 460673 . + . ID=Physo136437.3;Parent=Physo136437;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 460751 460981 . + 0 ID=Physo136437;Parent=Physo136437;rank=4 scaffold_45 . exon 460751 460981 . + . ID=Physo136437.4;Parent=Physo136437;constitutive=1;rank=4 scaffold_45 . CDS 461050 461157 . + 0 ID=Physo136437;Parent=Physo136437;rank=5 scaffold_45 . exon 461050 461157 . + . ID=Physo136437.5;Parent=Physo136437;constitutive=1;rank=5 scaffold_45 . CDS 461274 461324 . + 0 ID=Physo136437;Parent=Physo136437;rank=6 scaffold_45 . exon 461274 461324 . + . ID=Physo136437.6;Parent=Physo136437;constitutive=1;rank=6 scaffold_45 . CDS 461404 461504 . + 0 ID=Physo136437;Parent=Physo136437;rank=7 scaffold_45 . exon 461404 461504 . + . ID=Physo136437.7;Parent=Physo136437;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_45 . CDS 461583 461739 . + 0 ID=Physo136437;Parent=Physo136437;rank=8 scaffold_45 . exon 461583 461739 . + . ID=Physo136437.8;Parent=Physo136437;constitutive=1;ensembl_phase=2;rank=8 scaffold_45 . CDS 461814 461912 . + 0 ID=Physo136437;Parent=Physo136437;rank=9 scaffold_45 . exon 461814 461912 . + . ID=Physo136437.9;Parent=Physo136437;constitutive=1;rank=9 scaffold_45 ensembl protein_coding_gene 462125 463617 . - . ID=Physo157401;biotype=protein_coding;external_name=C_scaffold_45000024;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 462125 463617 . - . ID=Physo157401;Parent=Physo157401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 462125 462140 . - 0 ID=Physo157401;Parent=Physo157401;rank=2 scaffold_45 . exon 462125 462140 . - . ID=Physo157401.2;Parent=Physo157401;constitutive=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 462782 463617 . - 0 ID=Physo157401;Parent=Physo157401;rank=1 scaffold_45 . exon 462782 463617 . - . ID=Physo157401.1;Parent=Physo157401;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 464395 464918 . + . ID=Physo157402;biotype=protein_coding;external_name=C_scaffold_45000025;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 464395 464918 . + . ID=Physo157402;Parent=Physo157402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 464395 464502 . + 0 ID=Physo157402;Parent=Physo157402;rank=1 scaffold_45 . exon 464395 464502 . + . ID=Physo157402.1;Parent=Physo157402;constitutive=1;rank=1 scaffold_45 . CDS 464577 464918 . + 0 ID=Physo157402;Parent=Physo157402;rank=2 scaffold_45 . exon 464577 464918 . + . ID=Physo157402.2;Parent=Physo157402;constitutive=1;rank=2 scaffold_45 ensembl protein_coding_gene 464981 466373 . - . ID=Physo157403;biotype=protein_coding;external_name=C_scaffold_45000026;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 464981 466373 . - . ID=Physo157403;Parent=Physo157403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 464981 465747 . - 0 ID=Physo157403;Parent=Physo157403;rank=3 scaffold_45 . exon 464981 465747 . - . ID=Physo157403.3;Parent=Physo157403;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 465852 466072 . - 0 ID=Physo157403;Parent=Physo157403;rank=2 scaffold_45 . exon 465852 466072 . - . ID=Physo157403.2;Parent=Physo157403;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_45 . CDS 466126 466373 . - 0 ID=Physo157403;Parent=Physo157403;rank=1 scaffold_45 . repeat_region 472298 472347 . ? . description=dust scaffold_45 . biological_region 475455 475457 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 475369 478672 . - . ID=Physo108951;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_450019;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 475369 478672 . - . ID=Physo108951;Parent=Physo108951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 475369 476163 . - 0 ID=Physo108951;Parent=Physo108951;rank=6 scaffold_45 . exon 475369 476163 . - . ID=Physo108951.6;Parent=Physo108951;constitutive=1;rank=6 scaffold_45 . CDS 476236 476341 . - 0 ID=Physo108951;Parent=Physo108951;rank=5 scaffold_45 . CDS 476418 477382 . - 0 ID=Physo108951;Parent=Physo108951;rank=4 scaffold_45 . CDS 477458 477829 . - 0 ID=Physo108951;Parent=Physo108951;rank=3 scaffold_45 . CDS 477908 478477 . - 0 ID=Physo108951;Parent=Physo108951;rank=2 scaffold_45 . CDS 478520 478672 . - 0 ID=Physo108951;Parent=Physo108951;rank=1 scaffold_45 ensembl protein_coding_gene 468237 471461 . - . ID=Physo136441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450132;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 468237 471461 . - . ID=Physo136441;Parent=Physo136441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 468237 471461 . - 0 ID=Physo136441;Parent=Physo136441;rank=1 scaffold_45 . exon 468237 471461 . - . ID=Physo136441.1;Parent=Physo136441;constitutive=1;rank=1 scaffold_45 . exon 466126 466373 . - . ID=Physo157403.1;Parent=Physo157403;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_45 ensembl protein_coding_gene 466565 468068 . + . ID=Physo157405;biotype=protein_coding;external_name=C_scaffold_45000028;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 466565 468068 . + . ID=Physo157405;Parent=Physo157405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 466565 466685 . + 0 ID=Physo157405;Parent=Physo157405;rank=1 scaffold_45 . exon 466565 466685 . + . ID=Physo157405.1;Parent=Physo157405;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 466768 467003 . + 0 ID=Physo157405;Parent=Physo157405;rank=2 scaffold_45 . exon 466768 467003 . + . ID=Physo157405.2;Parent=Physo157405;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 467028 467309 . + 0 ID=Physo157405;Parent=Physo157405;rank=3 scaffold_45 . exon 467028 467309 . + . ID=Physo157405.3;Parent=Physo157405;constitutive=1;rank=3 scaffold_45 . CDS 467500 467980 . + 0 ID=Physo157405;Parent=Physo157405;rank=4 scaffold_45 . exon 467500 467980 . + . ID=Physo157405.4;Parent=Physo157405;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_45 . CDS 468052 468068 . + 0 ID=Physo157405;Parent=Physo157405;rank=5 scaffold_45 . exon 468052 468068 . + . ID=Physo157405.5;Parent=Physo157405;constitutive=1;ensembl_phase=1;rank=5 scaffold_45 . repeat_region 483513 483539 . ? . description=trf scaffold_45 . repeat_region 484101 484130 . ? . description=trf scaffold_45 . exon 476236 476341 . - . ID=Physo108951.5;Parent=Physo108951;constitutive=1;ensembl_phase=2;rank=5 scaffold_45 . exon 476418 477382 . - . ID=Physo108951.4;Parent=Physo108951;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_45 . exon 477458 477829 . - . ID=Physo108951.3;Parent=Physo108951;constitutive=1;rank=3 scaffold_45 . exon 477908 478477 . - . ID=Physo108951.2;Parent=Physo108951;constitutive=1;rank=2 scaffold_45 . exon 478520 478672 . - . ID=Physo108951.1;Parent=Physo108951;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 478808 482331 . - . ID=Physo136443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450134;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 478808 482331 . - . ID=Physo136443;Parent=Physo136443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 478808 480193 . - . ID=Physo136443.3;Parent=Physo136443;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_45 . CDS 478835 480193 . - 0 ID=Physo136443;Parent=Physo136443;rank=3 scaffold_45 . CDS 480556 482172 . - 0 ID=Physo136443;Parent=Physo136443;rank=2 scaffold_45 . exon 480556 482172 . - . ID=Physo136443.2;Parent=Physo136443;constitutive=1;rank=2 scaffold_45 . CDS 482245 482331 . - 0 ID=Physo136443;Parent=Physo136443;rank=1 scaffold_45 . exon 482245 482331 . - . ID=Physo136443.1;Parent=Physo136443;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 482649 483893 . - . ID=Physo136444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450135;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 482649 483893 . - . ID=Physo136444;Parent=Physo136444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 482649 483698 . - 0 ID=Physo136444;Parent=Physo136444;rank=1 scaffold_45 . exon 482649 483893 . - . ID=Physo136444.1;Parent=Physo136444;constitutive=1;ensembl_phase=-1;rank=1 scaffold_45 . biological_region 486276 486279 0.999 + . logic_name=eponine scaffold_45 . biological_region 490989 490989 0.999 + . logic_name=eponine scaffold_45 ensembl protein_coding_gene 486252 489587 . + . ID=Physo136445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450136;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 486252 489587 . + . ID=Physo136445;Parent=Physo136445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 486252 486350 . + 0 ID=Physo136445;Parent=Physo136445;rank=1 scaffold_45 . exon 486252 486350 . + . ID=Physo136445.1;Parent=Physo136445;constitutive=1;rank=1 scaffold_45 . CDS 486416 486507 . + 0 ID=Physo136445;Parent=Physo136445;rank=2 scaffold_45 . exon 486416 486507 . + . ID=Physo136445.2;Parent=Physo136445;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_45 . CDS 486572 486673 . + 0 ID=Physo136445;Parent=Physo136445;rank=3 scaffold_45 . exon 486572 486673 . + . ID=Physo136445.3;Parent=Physo136445;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_45 . CDS 486754 486819 . + 0 ID=Physo136445;Parent=Physo136445;rank=4 scaffold_45 . exon 486754 486819 . + . ID=Physo136445.4;Parent=Physo136445;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_45 . CDS 486882 486999 . + 0 ID=Physo136445;Parent=Physo136445;rank=5 scaffold_45 . exon 486882 486999 . + . ID=Physo136445.5;Parent=Physo136445;constitutive=1;ensembl_phase=2;rank=5 scaffold_45 . CDS 487072 487161 . + 0 ID=Physo136445;Parent=Physo136445;rank=6 scaffold_45 . exon 487072 487161 . + . ID=Physo136445.6;Parent=Physo136445;constitutive=1;rank=6 scaffold_45 . CDS 487242 489587 . + 0 ID=Physo136445;Parent=Physo136445;rank=7 scaffold_45 . exon 487242 489587 . + . ID=Physo136445.7;Parent=Physo136445;constitutive=1;rank=7 scaffold_45 ensembl protein_coding_gene 489762 490190 . - . ID=Physo136446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450137;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 489762 490190 . - . ID=Physo136446;Parent=Physo136446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 489762 490190 . - 0 ID=Physo136446;Parent=Physo136446;rank=1 scaffold_45 . exon 489762 490190 . - . ID=Physo136446.1;Parent=Physo136446;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 493635 498116 . + . ID=Physo136448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450139;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 493635 498116 . + . ID=Physo136448;Parent=Physo136448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 493635 495159 . + 0 ID=Physo136448;Parent=Physo136448;rank=1 scaffold_45 . exon 493635 495159 . + . ID=Physo136448.1;Parent=Physo136448;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 495223 495283 . + 0 ID=Physo136448;Parent=Physo136448;rank=2 scaffold_45 . exon 495223 495283 . + . ID=Physo136448.2;Parent=Physo136448;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_45 . CDS 495305 498116 . + 0 ID=Physo136448;Parent=Physo136448;rank=3 scaffold_45 . exon 495305 498116 . + . ID=Physo136448.3;Parent=Physo136448;constitutive=1;ensembl_phase=2;rank=3 scaffold_45 ensembl protein_coding_gene 490906 492245 . + . ID=Physo157407;biotype=protein_coding;external_name=C_scaffold_45000030;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 490906 492245 . + . ID=Physo157407;Parent=Physo157407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 490906 491980 . + 0 ID=Physo157407;Parent=Physo157407;rank=1 scaffold_45 . exon 490906 491980 . + . ID=Physo157407.1;Parent=Physo157407;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 492052 492245 . + 0 ID=Physo157407;Parent=Physo157407;rank=2 scaffold_45 . exon 492052 492245 . + . ID=Physo157407.2;Parent=Physo157407;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 ensembl protein_coding_gene 492324 493328 . - . ID=Physo157408;biotype=protein_coding;external_name=C_scaffold_45000031;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 492324 493328 . - . ID=Physo157408;Parent=Physo157408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 492324 492433 . - 0 ID=Physo157408;Parent=Physo157408;rank=4 scaffold_45 . exon 492324 492433 . - . ID=Physo157408.4;Parent=Physo157408;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 492497 492851 . - 0 ID=Physo157408;Parent=Physo157408;rank=3 scaffold_45 . exon 492497 492851 . - . ID=Physo157408.3;Parent=Physo157408;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . CDS 492926 493086 . - 0 ID=Physo157408;Parent=Physo157408;rank=2 scaffold_45 . exon 492926 493086 . - . ID=Physo157408.2;Parent=Physo157408;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 493175 493328 . - 0 ID=Physo157408;Parent=Physo157408;rank=1 scaffold_45 . exon 493175 493328 . - . ID=Physo157408.1;Parent=Physo157408;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . repeat_region 499263 499284 . ? . description=trf scaffold_45 . repeat_region 500365 500407 . ? . description=dust scaffold_45 ensembl protein_coding_gene 503480 504519 . - . ID=Physo117670;biotype=protein_coding;external_name=estExt_Genewise1.C_450064;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 503480 504519 . - . ID=Physo117670;Parent=Physo117670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . exon 503480 504519 . - . ID=Physo117670.1;Parent=Physo117670;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_45 . CDS 503507 504517 . - 0 ID=Physo117670;Parent=Physo117670;rank=1 scaffold_45 ensembl protein_coding_gene 498305 500449 . - . ID=Physo136449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450140;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 498305 500449 . - . ID=Physo136449;Parent=Physo136449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 498305 500449 . - 0 ID=Physo136449;Parent=Physo136449;rank=1 scaffold_45 . exon 498305 500449 . - . ID=Physo136449.1;Parent=Physo136449;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 500635 503142 . + . ID=Physo136450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450141;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 500635 503142 . + . ID=Physo136450;Parent=Physo136450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 500635 501025 . + 0 ID=Physo136450;Parent=Physo136450;rank=1 scaffold_45 . exon 500635 501025 . + . ID=Physo136450.1;Parent=Physo136450;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . CDS 501097 501188 . + 0 ID=Physo136450;Parent=Physo136450;rank=2 scaffold_45 . exon 501097 501188 . + . ID=Physo136450.2;Parent=Physo136450;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 501251 501374 . + 0 ID=Physo136450;Parent=Physo136450;rank=3 scaffold_45 . exon 501251 501374 . + . ID=Physo136450.3;Parent=Physo136450;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_45 . CDS 501443 501555 . + 0 ID=Physo136450;Parent=Physo136450;rank=4 scaffold_45 . exon 501443 501555 . + . ID=Physo136450.4;Parent=Physo136450;constitutive=1;ensembl_phase=1;rank=4 scaffold_45 . CDS 501647 501900 . + 0 ID=Physo136450;Parent=Physo136450;rank=5 scaffold_45 . exon 501647 501900 . + . ID=Physo136450.5;Parent=Physo136450;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_45 . CDS 501963 502557 . + 0 ID=Physo136450;Parent=Physo136450;rank=6 scaffold_45 . exon 501963 502557 . + . ID=Physo136450.6;Parent=Physo136450;constitutive=1;ensembl_phase=2;rank=6 scaffold_45 . CDS 502624 503142 . + 0 ID=Physo136450;Parent=Physo136450;rank=7 scaffold_45 . exon 502624 503142 . + . ID=Physo136450.7;Parent=Physo136450;constitutive=1;rank=7 scaffold_45 ensembl protein_coding_gene 504754 505629 . - . ID=Physo157411;biotype=protein_coding;external_name=C_scaffold_45000034;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 504754 505629 . - . ID=Physo157411;Parent=Physo157411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 504754 504981 . - 0 ID=Physo157411;Parent=Physo157411;rank=4 scaffold_45 . exon 504754 504981 . - . ID=Physo157411.4;Parent=Physo157411;constitutive=1;rank=4 scaffold_45 . CDS 505056 505244 . - 0 ID=Physo157411;Parent=Physo157411;rank=3 scaffold_45 . exon 505056 505244 . - . ID=Physo157411.3;Parent=Physo157411;constitutive=1;rank=3 scaffold_45 . CDS 505312 505514 . - 0 ID=Physo157411;Parent=Physo157411;rank=2 scaffold_45 . exon 505312 505514 . - . ID=Physo157411.2;Parent=Physo157411;constitutive=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 505539 505629 . - 0 ID=Physo157411;Parent=Physo157411;rank=1 scaffold_45 . exon 505539 505629 . - . ID=Physo157411.1;Parent=Physo157411;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 . biological_region 506861 506865 0.999 - . logic_name=eponine scaffold_45 ensembl protein_coding_gene 506430 508140 . - . ID=Physo136453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450144;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 506430 508140 . - . ID=Physo136453;Parent=Physo136453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 506430 506458 . - 0 ID=Physo136453;Parent=Physo136453;rank=3 scaffold_45 . exon 506430 506458 . - . ID=Physo136453.3;Parent=Physo136453;constitutive=1;ensembl_phase=1;rank=3 scaffold_45 . CDS 506934 507083 . - 0 ID=Physo136453;Parent=Physo136453;rank=2 scaffold_45 . exon 506934 507083 . - . ID=Physo136453.2;Parent=Physo136453;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_45 . CDS 507108 508140 . - 0 ID=Physo136453;Parent=Physo136453;rank=1 scaffold_45 . exon 507108 508140 . - . ID=Physo136453.1;Parent=Physo136453;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_45 ensembl protein_coding_gene 508371 510359 . - . ID=Physo136454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_450145;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 508371 510359 . - . ID=Physo136454;Parent=Physo136454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 508371 510359 . - 0 ID=Physo136454;Parent=Physo136454;rank=1 scaffold_45 . exon 508371 510359 . - . ID=Physo136454.1;Parent=Physo136454;constitutive=1;rank=1 scaffold_45 ensembl protein_coding_gene 505958 506218 . + . ID=Physo157412;biotype=protein_coding;external_name=C_scaffold_45000035;logic_name=jgi_physo1_1 scaffold_45 ensembl transcript 505958 506218 . + . ID=Physo157412;Parent=Physo157412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_45 . CDS 505958 506218 . + 0 ID=Physo157412;Parent=Physo157412;rank=1 scaffold_45 . exon 505958 506218 . + . ID=Physo157412.1;Parent=Physo157412;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_44 1 521234 scaffold_44 . biological_region 291 296 0.999 + . logic_name=eponine scaffold_44 . repeat_region 772 4816 . ? . description=dust scaffold_44 . repeat_region 6498 6621 . ? . description=trf scaffold_44 . repeat_region 7022 7035 . ? . description=dust scaffold_44 . repeat_region 8943 8951 . ? . description=dust scaffold_44 . biological_region 9158 9161 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 8978 10978 . - . ID=Physo136200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440001;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 8978 10978 . - . ID=Physo136200;Parent=Physo136200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 8978 9675 . - 0 ID=Physo136200;Parent=Physo136200;rank=5 scaffold_44 . exon 8978 9675 . - . ID=Physo136200.5;Parent=Physo136200;constitutive=1;ensembl_phase=1;rank=5 scaffold_44 . CDS 9747 9829 . - 0 ID=Physo136200;Parent=Physo136200;rank=4 scaffold_44 . exon 9747 9829 . - . ID=Physo136200.4;Parent=Physo136200;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 9893 10044 . - 0 ID=Physo136200;Parent=Physo136200;rank=3 scaffold_44 . CDS 10081 10165 . - 0 ID=Physo136200;Parent=Physo136200;rank=2 scaffold_44 . CDS 10383 10978 . - 0 ID=Physo136200;Parent=Physo136200;rank=1 scaffold_44 . repeat_region 10764 10831 . + . description=(TCG)n scaffold_44 . exon 9893 10044 . - . ID=Physo136200.3;Parent=Physo136200;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . exon 10081 10165 . - . ID=Physo136200.2;Parent=Physo136200;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . exon 10383 10978 . - . ID=Physo136200.1;Parent=Physo136200;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . biological_region 22986 22989 0.999 + . logic_name=eponine scaffold_44 . biological_region 23014 23015 0.999 - . logic_name=eponine scaffold_44 . biological_region 23051 23055 0.999 - . logic_name=eponine scaffold_44 . repeat_region 23586 25989 . + . description=GypsyPi-1c_I-int scaffold_44 . repeat_region 25538 25574 . ? . description=trf scaffold_44 . biological_region 27074 27078 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 22453 26054 . + . ID=Physo136201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440002;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 22453 26054 . + . ID=Physo136201;Parent=Physo136201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 22453 25374 . + 0 ID=Physo136201;Parent=Physo136201;rank=1 scaffold_44 . exon 22453 25374 . + . ID=Physo136201.1;Parent=Physo136201;constitutive=1;rank=1 scaffold_44 . CDS 25497 26054 . + 0 ID=Physo136201;Parent=Physo136201;rank=2 scaffold_44 . exon 25497 26054 . + . ID=Physo136201.2;Parent=Physo136201;constitutive=1;rank=2 scaffold_44 . repeat_region 32433 32482 . ? . description=dust scaffold_44 . repeat_region 33875 34707 . ? . description=dust scaffold_44 . repeat_region 35880 43671 . ? . description=dust scaffold_44 ensembl protein_coding_gene 35073 35835 . + . ID=Physo108928;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_440001;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 35073 35835 . + . ID=Physo108928;Parent=Physo108928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 35073 35835 . + . ID=Physo108928.1;Parent=Physo108928;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_44 . CDS 35075 35776 . + 0 ID=Physo108928;Parent=Physo108928;rank=1 scaffold_44 ensembl protein_coding_gene 30102 31931 . + . ID=Physo136202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440003;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 30102 31931 . + . ID=Physo136202;Parent=Physo136202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 30102 31246 . + 0 ID=Physo136202;Parent=Physo136202;rank=1 scaffold_44 . exon 30102 31246 . + . ID=Physo136202.1;Parent=Physo136202;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 31319 31931 . + 0 ID=Physo136202;Parent=Physo136202;rank=2 scaffold_44 . exon 31319 31931 . + . ID=Physo136202.2;Parent=Physo136202;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 ensembl protein_coding_gene 32237 32837 . - . ID=Physo136203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440004;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 32237 32837 . - . ID=Physo136203;Parent=Physo136203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 32237 32368 . - 0 ID=Physo136203;Parent=Physo136203;rank=3 scaffold_44 . exon 32237 32368 . - . ID=Physo136203.3;Parent=Physo136203;constitutive=1;rank=3 scaffold_44 . CDS 32588 32629 . - 0 ID=Physo136203;Parent=Physo136203;rank=2 scaffold_44 . exon 32588 32629 . - . ID=Physo136203.2;Parent=Physo136203;constitutive=1;rank=2 scaffold_44 . CDS 32688 32837 . - 0 ID=Physo136203;Parent=Physo136203;rank=1 scaffold_44 . exon 32688 32837 . - . ID=Physo136203.1;Parent=Physo136203;constitutive=1;rank=1 scaffold_44 . repeat_region 45036 45071 . ? . description=trf scaffold_44 . repeat_region 45660 45721 . ? . description=trf scaffold_44 . biological_region 45744 45752 0.999 - . logic_name=eponine scaffold_44 . biological_region 47578 47581 0.999 + . logic_name=eponine scaffold_44 . biological_region 47632 47638 0.999 + . logic_name=eponine scaffold_44 . biological_region 47666 47669 0.999 + . logic_name=eponine scaffold_44 . biological_region 47669 47673 0.999 - . logic_name=eponine scaffold_44 . biological_region 47682 47683 0.999 - . logic_name=eponine scaffold_44 . biological_region 47754 47757 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 47282 49447 . - . ID=Physo136205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440006;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 47282 49447 . - . ID=Physo136205;Parent=Physo136205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 47282 48004 . - 0 ID=Physo136205;Parent=Physo136205;rank=2 scaffold_44 . exon 47282 48004 . - . ID=Physo136205.2;Parent=Physo136205;constitutive=1;rank=2 scaffold_44 . CDS 48356 49447 . - 0 ID=Physo136205;Parent=Physo136205;rank=1 scaffold_44 . exon 48356 49447 . - . ID=Physo136205.1;Parent=Physo136205;constitutive=1;rank=1 scaffold_44 . repeat_region 49457 49481 . ? . description=dust scaffold_44 . repeat_region 55613 55620 . ? . description=dust scaffold_44 . repeat_region 57532 57540 . ? . description=dust scaffold_44 ensembl protein_coding_gene 50161 52349 . - . ID=Physo136206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440007;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 50161 52349 . - . ID=Physo136206;Parent=Physo136206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 50161 50168 . - 0 ID=Physo136206;Parent=Physo136206;rank=6 scaffold_44 . exon 50161 50168 . - . ID=Physo136206.6;Parent=Physo136206;constitutive=1;ensembl_phase=1;rank=6 scaffold_44 . CDS 50534 50955 . - 0 ID=Physo136206;Parent=Physo136206;rank=5 scaffold_44 . exon 50534 50955 . - . ID=Physo136206.5;Parent=Physo136206;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 51105 51804 . - 0 ID=Physo136206;Parent=Physo136206;rank=4 scaffold_44 . exon 51105 51804 . - . ID=Physo136206.4;Parent=Physo136206;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_44 . CDS 51892 51928 . - 0 ID=Physo136206;Parent=Physo136206;rank=3 scaffold_44 . exon 51892 51928 . - . ID=Physo136206.3;Parent=Physo136206;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 51966 52251 . - 0 ID=Physo136206;Parent=Physo136206;rank=2 scaffold_44 . exon 51966 52251 . - . ID=Physo136206.2;Parent=Physo136206;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 52339 52349 . - 0 ID=Physo136206;Parent=Physo136206;rank=1 scaffold_44 . exon 52339 52349 . - . ID=Physo136206.1;Parent=Physo136206;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 57557 58028 . + . ID=Physo136207;biotype=protein_coding;description=PsAvh94a [Source:UniProtKB/TrEMBL%3BAcc:E0W563];external_name=estExt_fgenesh1_pg.C_440008;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 57557 58028 . + . ID=Physo136207;Parent=Physo136207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 57557 58028 . + . ID=Physo136207.1;Parent=Physo136207;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 . CDS 57606 58028 . + 0 ID=Physo136207;Parent=Physo136207;rank=1 scaffold_44 ensembl protein_coding_gene 58901 60307 . - . ID=Physo136208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440009;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 58901 60307 . - . ID=Physo136208;Parent=Physo136208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 58901 60307 . - 0 ID=Physo136208;Parent=Physo136208;rank=1 scaffold_44 . exon 58901 60307 . - . ID=Physo136208.1;Parent=Physo136208;constitutive=1;rank=1 scaffold_44 . biological_region 60522 60524 0.999 - . logic_name=eponine scaffold_44 . repeat_region 61756 61797 . ? . description=trf scaffold_44 . biological_region 63615 63616 0.999 - . logic_name=eponine scaffold_44 . biological_region 63653 63658 0.999 - . logic_name=eponine scaffold_44 . biological_region 66479 66481 0.999 - . logic_name=eponine scaffold_44 . biological_region 66519 66523 0.999 - . logic_name=eponine scaffold_44 . biological_region 66583 66585 0.999 - . logic_name=eponine scaffold_44 . biological_region 66618 66621 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 65615 66046 . + . ID=Physo136209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440010;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 65615 66046 . + . ID=Physo136209;Parent=Physo136209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 65615 66046 . + 0 ID=Physo136209;Parent=Physo136209;rank=1 scaffold_44 . exon 65615 66046 . + . ID=Physo136209.1;Parent=Physo136209;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 66803 71875 . - . ID=Physo136210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440011;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 66803 71875 . - . ID=Physo136210;Parent=Physo136210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 66803 67420 . - 0 ID=Physo136210;Parent=Physo136210;rank=8 scaffold_44 . exon 66803 67420 . - . ID=Physo136210.8;Parent=Physo136210;constitutive=1;rank=8 scaffold_44 . CDS 67571 67990 . - 0 ID=Physo136210;Parent=Physo136210;rank=7 scaffold_44 . exon 67571 67990 . - . ID=Physo136210.7;Parent=Physo136210;constitutive=1;rank=7 scaffold_44 . CDS 68228 68467 . - 0 ID=Physo136210;Parent=Physo136210;rank=6 scaffold_44 . exon 68228 68467 . - . ID=Physo136210.6;Parent=Physo136210;constitutive=1;rank=6 scaffold_44 . CDS 68522 69007 . - 0 ID=Physo136210;Parent=Physo136210;rank=5 scaffold_44 . exon 68522 69007 . - . ID=Physo136210.5;Parent=Physo136210;constitutive=1;rank=5 scaffold_44 . CDS 69347 69392 . - 0 ID=Physo136210;Parent=Physo136210;rank=4 scaffold_44 . CDS 69420 71521 . - 0 ID=Physo136210;Parent=Physo136210;rank=3 scaffold_44 . CDS 71555 71615 . - 0 ID=Physo136210;Parent=Physo136210;rank=2 scaffold_44 . CDS 71670 71875 . - 0 ID=Physo136210;Parent=Physo136210;rank=1 scaffold_44 . repeat_region 76048 76055 . ? . description=dust scaffold_44 . exon 69347 69392 . - . ID=Physo136210.4;Parent=Physo136210;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . exon 69420 71521 . - . ID=Physo136210.3;Parent=Physo136210;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . exon 71555 71615 . - . ID=Physo136210.2;Parent=Physo136210;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . exon 71670 71875 . - . ID=Physo136210.1;Parent=Physo136210;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 73383 74723 . - . ID=Physo136211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440012;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 73383 74723 . - . ID=Physo136211;Parent=Physo136211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 73383 73748 . - 0 ID=Physo136211;Parent=Physo136211;rank=3 scaffold_44 . exon 73383 73748 . - . ID=Physo136211.3;Parent=Physo136211;constitutive=1;rank=3 scaffold_44 . CDS 74052 74137 . - 0 ID=Physo136211;Parent=Physo136211;rank=2 scaffold_44 . exon 74052 74137 . - . ID=Physo136211.2;Parent=Physo136211;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 74180 74723 . - 0 ID=Physo136211;Parent=Physo136211;rank=1 scaffold_44 . exon 74180 74723 . - . ID=Physo136211.1;Parent=Physo136211;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 78039 78633 . - . ID=Physo136212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440013;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 78039 78633 . - . ID=Physo136212;Parent=Physo136212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 78039 78317 . - 0 ID=Physo136212;Parent=Physo136212;rank=3 scaffold_44 . exon 78039 78317 . - . ID=Physo136212.3;Parent=Physo136212;constitutive=1;rank=3 scaffold_44 . CDS 78382 78500 . - 0 ID=Physo136212;Parent=Physo136212;rank=2 scaffold_44 . exon 78382 78500 . - . ID=Physo136212.2;Parent=Physo136212;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 78606 78633 . - 0 ID=Physo136212;Parent=Physo136212;rank=1 scaffold_44 . exon 78606 78633 . - . ID=Physo136212.1;Parent=Physo136212;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . repeat_region 79761 79789 . ? . description=trf scaffold_44 . biological_region 81022 81024 0.999 + . logic_name=eponine scaffold_44 . biological_region 82725 82728 0.999 - . logic_name=eponine scaffold_44 . biological_region 83257 83258 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 81188 82115 . + . ID=Physo136213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440014;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 81188 82115 . + . ID=Physo136213;Parent=Physo136213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 81188 81190 . + 0 ID=Physo136213;Parent=Physo136213;rank=1 scaffold_44 . exon 81188 81190 . + . ID=Physo136213.1;Parent=Physo136213;constitutive=1;rank=1 scaffold_44 . CDS 81240 82115 . + 0 ID=Physo136213;Parent=Physo136213;rank=2 scaffold_44 . exon 81240 82115 . + . ID=Physo136213.2;Parent=Physo136213;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 82982 83428 . - . ID=Physo136214;biotype=protein_coding;description=PsAvh94b [Source:UniProtKB/TrEMBL%3BAcc:E0W564];external_name=estExt_fgenesh1_pg.C_440015;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 82982 83428 . - . ID=Physo136214;Parent=Physo136214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 82982 83404 . - 0 ID=Physo136214;Parent=Physo136214;rank=1 scaffold_44 . exon 82982 83428 . - . ID=Physo136214.1;Parent=Physo136214;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 . repeat_region 97897 97904 . ? . description=dust scaffold_44 ensembl protein_coding_gene 89153 89596 . - . ID=Physo136215;biotype=protein_coding;description=PsAvh180 [Source:UniProtKB/TrEMBL%3BAcc:E0W566];external_name=estExt_fgenesh1_pg.C_440016;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 89153 89596 . - . ID=Physo136215;Parent=Physo136215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 89153 89596 . - 0 ID=Physo136215;Parent=Physo136215;rank=1 scaffold_44 . exon 89153 89596 . - . ID=Physo136215.1;Parent=Physo136215;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 90184 90696 . - . ID=Physo136216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440017;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 90184 90696 . - . ID=Physo136216;Parent=Physo136216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 90184 90696 . - 0 ID=Physo136216;Parent=Physo136216;rank=1 scaffold_44 . exon 90184 90696 . - . ID=Physo136216.1;Parent=Physo136216;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 90919 96593 . + . ID=Physo136217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440018;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 90919 96593 . + . ID=Physo136217;Parent=Physo136217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 90919 92021 . + 0 ID=Physo136217;Parent=Physo136217;rank=1 scaffold_44 . exon 90919 92021 . + . ID=Physo136217.1;Parent=Physo136217;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 92096 92267 . + 0 ID=Physo136217;Parent=Physo136217;rank=2 scaffold_44 . exon 92096 92267 . + . ID=Physo136217.2;Parent=Physo136217;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 92288 92300 . + 0 ID=Physo136217;Parent=Physo136217;rank=3 scaffold_44 . exon 92288 92300 . + . ID=Physo136217.3;Parent=Physo136217;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 92385 92394 . + 0 ID=Physo136217;Parent=Physo136217;rank=4 scaffold_44 . exon 92385 92394 . + . ID=Physo136217.4;Parent=Physo136217;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_44 . CDS 92435 92463 . + 0 ID=Physo136217;Parent=Physo136217;rank=5 scaffold_44 . exon 92435 92463 . + . ID=Physo136217.5;Parent=Physo136217;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 92545 92689 . + 0 ID=Physo136217;Parent=Physo136217;rank=6 scaffold_44 . exon 92545 92689 . + . ID=Physo136217.6;Parent=Physo136217;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_44 . CDS 92764 92874 . + 0 ID=Physo136217;Parent=Physo136217;rank=7 scaffold_44 . exon 92764 92874 . + . ID=Physo136217.7;Parent=Physo136217;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_44 . CDS 92950 93019 . + 0 ID=Physo136217;Parent=Physo136217;rank=8 scaffold_44 . exon 92950 93019 . + . ID=Physo136217.8;Parent=Physo136217;constitutive=1;ensembl_phase=2;rank=8 scaffold_44 . CDS 93096 93357 . + 0 ID=Physo136217;Parent=Physo136217;rank=9 scaffold_44 . exon 93096 93357 . + . ID=Physo136217.9;Parent=Physo136217;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_44 . CDS 93432 93735 . + 0 ID=Physo136217;Parent=Physo136217;rank=10 scaffold_44 . exon 93432 93735 . + . ID=Physo136217.10;Parent=Physo136217;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_44 . CDS 93906 94144 . + 0 ID=Physo136217;Parent=Physo136217;rank=11 scaffold_44 . exon 93906 94144 . + . ID=Physo136217.11;Parent=Physo136217;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_44 . CDS 94216 94927 . + 0 ID=Physo136217;Parent=Physo136217;rank=12 scaffold_44 . exon 94216 94927 . + . ID=Physo136217.12;Parent=Physo136217;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_44 . CDS 95006 95288 . + 0 ID=Physo136217;Parent=Physo136217;rank=13 scaffold_44 . exon 95006 95288 . + . ID=Physo136217.13;Parent=Physo136217;constitutive=1;ensembl_phase=2;rank=13 scaffold_44 . CDS 95644 95974 . + 0 ID=Physo136217;Parent=Physo136217;rank=14 scaffold_44 . exon 95644 95974 . + . ID=Physo136217.14;Parent=Physo136217;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_44 . CDS 96051 96274 . + 0 ID=Physo136217;Parent=Physo136217;rank=15 scaffold_44 . exon 96051 96274 . + . ID=Physo136217.15;Parent=Physo136217;constitutive=1;ensembl_phase=1;rank=15 scaffold_44 . CDS 96351 96593 . + 0 ID=Physo136217;Parent=Physo136217;rank=16 scaffold_44 . exon 96351 96593 . + . ID=Physo136217.16;Parent=Physo136217;constitutive=1;rank=16 scaffold_44 ensembl protein_coding_gene 96802 97518 . - . ID=Physo136218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440019;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 96802 97518 . - . ID=Physo136218;Parent=Physo136218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 96802 97518 . - 0 ID=Physo136218;Parent=Physo136218;rank=1 scaffold_44 . exon 96802 97518 . - . ID=Physo136218.1;Parent=Physo136218;constitutive=1;rank=1 scaffold_44 . biological_region 98682 98688 0.999 + . logic_name=eponine scaffold_44 . biological_region 98701 98703 0.999 + . logic_name=eponine scaffold_44 . biological_region 100406 100410 0.999 - . logic_name=eponine scaffold_44 . repeat_region 100724 100762 . ? . description=trf scaffold_44 . biological_region 104259 104260 0.999 - . logic_name=eponine scaffold_44 . biological_region 104747 104748 0.999 + . logic_name=eponine scaffold_44 . biological_region 105248 105251 0.999 + . logic_name=eponine scaffold_44 . biological_region 105271 105275 0.999 + . logic_name=eponine scaffold_44 . biological_region 105360 105363 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 98621 99523 . + . ID=Physo136219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440020;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 98621 99523 . + . ID=Physo136219;Parent=Physo136219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 98621 99523 . + 0 ID=Physo136219;Parent=Physo136219;rank=1 scaffold_44 . exon 98621 99523 . + . ID=Physo136219.1;Parent=Physo136219;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 99636 100605 . - . ID=Physo136220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440021;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 99636 100605 . - . ID=Physo136220;Parent=Physo136220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 99636 100605 . - . ID=Physo136220.1;Parent=Physo136220;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_44 . CDS 99757 100605 . - 0 ID=Physo136220;Parent=Physo136220;rank=1 scaffold_44 ensembl protein_coding_gene 100807 101673 . + . ID=Physo136221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440022;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 100807 101673 . + . ID=Physo136221;Parent=Physo136221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 100807 101673 . + . ID=Physo136221.1;Parent=Physo136221;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 . CDS 100864 101673 . + 0 ID=Physo136221;Parent=Physo136221;rank=1 scaffold_44 ensembl protein_coding_gene 101957 102831 . + . ID=Physo136222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440023;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 101957 102831 . + . ID=Physo136222;Parent=Physo136222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 101957 102163 . + 0 ID=Physo136222;Parent=Physo136222;rank=1 scaffold_44 . exon 101957 102163 . + . ID=Physo136222.1;Parent=Physo136222;constitutive=1;rank=1 scaffold_44 . CDS 102230 102282 . + 0 ID=Physo136222;Parent=Physo136222;rank=2 scaffold_44 . exon 102230 102282 . + . ID=Physo136222.2;Parent=Physo136222;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_44 . CDS 102355 102703 . + 0 ID=Physo136222;Parent=Physo136222;rank=3 scaffold_44 . exon 102355 102703 . + . ID=Physo136222.3;Parent=Physo136222;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 102760 102831 . + 0 ID=Physo136222;Parent=Physo136222;rank=4 scaffold_44 . exon 102760 102831 . + . ID=Physo136222.4;Parent=Physo136222;constitutive=1;rank=4 scaffold_44 ensembl protein_coding_gene 103431 104317 . - . ID=Physo136223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440024;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 103431 104317 . - . ID=Physo136223;Parent=Physo136223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 103431 103721 . - 0 ID=Physo136223;Parent=Physo136223;rank=3 scaffold_44 . exon 103431 103721 . - . ID=Physo136223.3;Parent=Physo136223;constitutive=1;rank=3 scaffold_44 . CDS 103792 103963 . - 0 ID=Physo136223;Parent=Physo136223;rank=2 scaffold_44 . exon 103792 103963 . - . ID=Physo136223.2;Parent=Physo136223;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 104058 104317 . - 0 ID=Physo136223;Parent=Physo136223;rank=1 scaffold_44 . exon 104058 104317 . - . ID=Physo136223.1;Parent=Physo136223;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 104607 105680 . + . ID=Physo136224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440025;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 104607 105680 . + . ID=Physo136224;Parent=Physo136224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 104607 104988 . + . ID=Physo136224.1;Parent=Physo136224;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 . CDS 104608 104988 . + 0 ID=Physo136224;Parent=Physo136224;rank=1 scaffold_44 . CDS 105072 105624 . + 0 ID=Physo136224;Parent=Physo136224;rank=2 scaffold_44 . exon 105072 105624 . + . ID=Physo136224.2;Parent=Physo136224;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_44 . CDS 105661 105680 . + 0 ID=Physo136224;Parent=Physo136224;rank=3 scaffold_44 . exon 105661 105680 . + . ID=Physo136224.3;Parent=Physo136224;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 . repeat_region 111191 111199 . ? . description=dust scaffold_44 . repeat_region 111855 111899 . ? . description=dust scaffold_44 ensembl protein_coding_gene 112013 114509 . + . ID=Physo136225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440026;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 112013 114509 . + . ID=Physo136225;Parent=Physo136225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 112013 112998 . + 0 ID=Physo136225;Parent=Physo136225;rank=1 scaffold_44 . exon 112013 112998 . + . ID=Physo136225.1;Parent=Physo136225;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 113031 114246 . + 0 ID=Physo136225;Parent=Physo136225;rank=2 scaffold_44 . exon 113031 114246 . + . ID=Physo136225.2;Parent=Physo136225;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 114318 114509 . + 0 ID=Physo136225;Parent=Physo136225;rank=3 scaffold_44 . exon 114318 114509 . + . ID=Physo136225.3;Parent=Physo136225;constitutive=1;rank=3 scaffold_44 . biological_region 119358 119362 0.999 - . logic_name=eponine scaffold_44 . repeat_region 120144 120192 . ? . description=trf scaffold_44 . repeat_region 120147 120191 . ? . description=trf scaffold_44 . biological_region 121984 121986 0.999 + . logic_name=eponine scaffold_44 . biological_region 124287 124293 0.999 - . logic_name=eponine scaffold_44 . biological_region 124322 124324 0.999 - . logic_name=eponine scaffold_44 . biological_region 124341 124341 0.999 - . logic_name=eponine scaffold_44 . biological_region 124343 124348 0.999 + . logic_name=eponine scaffold_44 . biological_region 124447 124449 0.999 + . logic_name=eponine scaffold_44 . biological_region 124600 124603 0.999 - . logic_name=eponine scaffold_44 . biological_region 125286 125289 0.999 + . logic_name=eponine scaffold_44 . biological_region 125352 125355 0.999 - . logic_name=eponine scaffold_44 . biological_region 125405 125406 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 122479 123856 . + . ID=Physo136226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440027;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 122479 123856 . + . ID=Physo136226;Parent=Physo136226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 122479 122529 . + 0 ID=Physo136226;Parent=Physo136226;rank=1 scaffold_44 . exon 122479 122529 . + . ID=Physo136226.1;Parent=Physo136226;constitutive=1;rank=1 scaffold_44 . CDS 122660 123856 . + 0 ID=Physo136226;Parent=Physo136226;rank=2 scaffold_44 . exon 122660 123856 . + . ID=Physo136226.2;Parent=Physo136226;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 124015 124773 . - . ID=Physo136227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440028;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 124015 124773 . - . ID=Physo136227;Parent=Physo136227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 124015 124688 . - 0 ID=Physo136227;Parent=Physo136227;rank=2 scaffold_44 . exon 124015 124688 . - . ID=Physo136227.2;Parent=Physo136227;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 124761 124773 . - 0 ID=Physo136227;Parent=Physo136227;rank=1 scaffold_44 . exon 124761 124773 . - . ID=Physo136227.1;Parent=Physo136227;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 127211 128118 . - . ID=Physo136228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440029;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 127211 128118 . - . ID=Physo136228;Parent=Physo136228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 127211 127893 . - 0 ID=Physo136228;Parent=Physo136228;rank=2 scaffold_44 . exon 127211 127893 . - . ID=Physo136228.2;Parent=Physo136228;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 127959 128118 . - 0 ID=Physo136228;Parent=Physo136228;rank=1 scaffold_44 . repeat_region 129083 129116 . ? . description=dust scaffold_44 . repeat_region 136344 136352 . ? . description=dust scaffold_44 ensembl tRNA_gene 129117 129187 . + . ID=EPrPSOG00000000119;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_44 ensembl transcript 129117 129187 . + . ID=EPrPSOT00000000119;Parent=EPrPSOG00000000119;biotype=tRNA;logic_name=ncrna_eg scaffold_44 . exon 129117 129187 . + . ID=EPrPSOE00000000119;Parent=EPrPSOT00000000119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . exon 127959 128118 . - . ID=Physo136228.1;Parent=Physo136228;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 130001 134047 . + . ID=Physo136229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440030;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 130001 134047 . + . ID=Physo136229;Parent=Physo136229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 130001 134047 . + 0 ID=Physo136229;Parent=Physo136229;rank=1 scaffold_44 . exon 130001 134047 . + . ID=Physo136229.1;Parent=Physo136229;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 134324 135730 . - . ID=Physo136230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440031;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 134324 135730 . - . ID=Physo136230;Parent=Physo136230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 134324 135730 . - 0 ID=Physo136230;Parent=Physo136230;rank=1 scaffold_44 . exon 134324 135730 . - . ID=Physo136230.1;Parent=Physo136230;constitutive=1;rank=1 scaffold_44 . biological_region 140463 140468 0.999 + . logic_name=eponine scaffold_44 . biological_region 141319 141323 0.999 + . logic_name=eponine scaffold_44 . biological_region 141832 141834 0.999 + . logic_name=eponine scaffold_44 . repeat_region 142042 142064 . ? . description=trf scaffold_44 . biological_region 142706 142706 0.999 - . logic_name=eponine scaffold_44 . biological_region 142982 142983 0.999 - . logic_name=eponine scaffold_44 . biological_region 146384 146385 0.999 + . logic_name=eponine scaffold_44 . biological_region 146661 146661 0.999 + . logic_name=eponine scaffold_44 . repeat_region 147302 147324 . ? . description=trf scaffold_44 ensembl protein_coding_gene 137938 140567 . + . ID=Physo136231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440032;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 137938 140567 . + . ID=Physo136231;Parent=Physo136231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 137938 138052 . + 0 ID=Physo136231;Parent=Physo136231;rank=1 scaffold_44 . exon 137938 138052 . + . ID=Physo136231.1;Parent=Physo136231;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 138373 138764 . + 0 ID=Physo136231;Parent=Physo136231;rank=2 scaffold_44 . exon 138373 138764 . + . ID=Physo136231.2;Parent=Physo136231;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 138963 139035 . + 0 ID=Physo136231;Parent=Physo136231;rank=3 scaffold_44 . exon 138963 139035 . + . ID=Physo136231.3;Parent=Physo136231;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 139082 139265 . + 0 ID=Physo136231;Parent=Physo136231;rank=4 scaffold_44 . exon 139082 139265 . + . ID=Physo136231.4;Parent=Physo136231;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_44 . CDS 139769 140148 . + 0 ID=Physo136231;Parent=Physo136231;rank=5 scaffold_44 . exon 139769 140148 . + . ID=Physo136231.5;Parent=Physo136231;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 140179 140567 . + 0 ID=Physo136231;Parent=Physo136231;rank=6 scaffold_44 . exon 140179 140567 . + . ID=Physo136231.6;Parent=Physo136231;constitutive=1;ensembl_phase=1;rank=6 scaffold_44 ensembl protein_coding_gene 141690 143213 . + . ID=Physo136232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440033;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 141690 143213 . + . ID=Physo136232;Parent=Physo136232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 141690 143213 . + 0 ID=Physo136232;Parent=Physo136232;rank=1 scaffold_44 . exon 141690 143213 . + . ID=Physo136232.1;Parent=Physo136232;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 146153 147676 . - . ID=Physo136233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440034;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 146153 147676 . - . ID=Physo136233;Parent=Physo136233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 146153 147676 . - 0 ID=Physo136233;Parent=Physo136233;rank=1 scaffold_44 . exon 146153 147676 . - . ID=Physo136233.1;Parent=Physo136233;constitutive=1;rank=1 scaffold_44 . repeat_region 152996 153003 . ? . description=dust scaffold_44 . repeat_region 153443 153503 . ? . description=dust scaffold_44 ensembl protein_coding_gene 149846 151205 . - . ID=Physo136234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440035;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 149846 151205 . - . ID=Physo136234;Parent=Physo136234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 149846 149861 . - 0 ID=Physo136234;Parent=Physo136234;rank=3 scaffold_44 . exon 149846 149861 . - . ID=Physo136234.3;Parent=Physo136234;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 149962 150662 . - 0 ID=Physo136234;Parent=Physo136234;rank=2 scaffold_44 . exon 149962 150662 . - . ID=Physo136234.2;Parent=Physo136234;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_44 . CDS 150741 151205 . - 0 ID=Physo136234;Parent=Physo136234;rank=1 scaffold_44 . exon 150741 151205 . - . ID=Physo136234.1;Parent=Physo136234;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 153868 158068 . + . ID=Physo136235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440036;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 153868 158068 . + . ID=Physo136235;Parent=Physo136235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 153868 155163 . + 0 ID=Physo136235;Parent=Physo136235;rank=1 scaffold_44 . exon 153868 155163 . + . ID=Physo136235.1;Parent=Physo136235;constitutive=1;rank=1 scaffold_44 . CDS 155665 156000 . + 0 ID=Physo136235;Parent=Physo136235;rank=2 scaffold_44 . exon 155665 156000 . + . ID=Physo136235.2;Parent=Physo136235;constitutive=1;rank=2 scaffold_44 . CDS 156671 158068 . + 0 ID=Physo136235;Parent=Physo136235;rank=3 scaffold_44 . exon 156671 158068 . + . ID=Physo136235.3;Parent=Physo136235;constitutive=1;rank=3 scaffold_44 ensembl protein_coding_gene 158884 161777 . - . ID=Physo136236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440037;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 158884 161777 . - . ID=Physo136236;Parent=Physo136236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 158884 160511 . - 0 ID=Physo136236;Parent=Physo136236;rank=4 scaffold_44 . exon 158884 160511 . - . ID=Physo136236.4;Parent=Physo136236;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 160603 160960 . - 0 ID=Physo136236;Parent=Physo136236;rank=3 scaffold_44 . exon 160603 160960 . - . ID=Physo136236.3;Parent=Physo136236;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 161024 161362 . - 0 ID=Physo136236;Parent=Physo136236;rank=2 scaffold_44 . exon 161024 161362 . - . ID=Physo136236.2;Parent=Physo136236;constitutive=1;rank=2 scaffold_44 . CDS 161478 161777 . - 0 ID=Physo136236;Parent=Physo136236;rank=1 scaffold_44 . exon 161478 161777 . - . ID=Physo136236.1;Parent=Physo136236;constitutive=1;rank=1 scaffold_44 . repeat_region 163027 171744 . ? . description=dust scaffold_44 . biological_region 172394 172398 0.999 + . logic_name=eponine scaffold_44 . repeat_region 172518 172540 . ? . description=trf scaffold_44 . biological_region 172750 172751 0.999 - . logic_name=eponine scaffold_44 . repeat_region 174433 174440 . ? . description=dust scaffold_44 . repeat_region 176099 176107 . ? . description=dust scaffold_44 ensembl protein_coding_gene 171779 172892 . - . ID=Physo136237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440038;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 171779 172892 . - . ID=Physo136237;Parent=Physo136237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 171779 172091 . - . ID=Physo136237.2;Parent=Physo136237;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_44 . CDS 172079 172091 . - 0 ID=Physo136237;Parent=Physo136237;rank=2 scaffold_44 . CDS 172153 172892 . - 0 ID=Physo136237;Parent=Physo136237;rank=1 scaffold_44 . exon 172153 172892 . - . ID=Physo136237.1;Parent=Physo136237;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . repeat_region 185994 186644 . - . description=Polinton-1_PI scaffold_44 ensembl protein_coding_gene 179921 181429 . + . ID=Physo136238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440039;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 179921 181429 . + . ID=Physo136238;Parent=Physo136238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 179921 181429 . + 0 ID=Physo136238;Parent=Physo136238;rank=1 scaffold_44 . exon 179921 181429 . + . ID=Physo136238.1;Parent=Physo136238;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 181771 184697 . + . ID=Physo136239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440040;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 181771 184697 . + . ID=Physo136239;Parent=Physo136239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 181771 182710 . + 0 ID=Physo136239;Parent=Physo136239;rank=1 scaffold_44 . exon 181771 182710 . + . ID=Physo136239.1;Parent=Physo136239;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 182788 182941 . + 0 ID=Physo136239;Parent=Physo136239;rank=2 scaffold_44 . exon 182788 182941 . + . ID=Physo136239.2;Parent=Physo136239;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_44 . CDS 183092 183128 . + 0 ID=Physo136239;Parent=Physo136239;rank=3 scaffold_44 . exon 183092 183128 . + . ID=Physo136239.3;Parent=Physo136239;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 183431 183855 . + 0 ID=Physo136239;Parent=Physo136239;rank=4 scaffold_44 . exon 183431 183855 . + . ID=Physo136239.4;Parent=Physo136239;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_44 . CDS 183887 184697 . + 0 ID=Physo136239;Parent=Physo136239;rank=5 scaffold_44 . exon 183887 184697 . + . ID=Physo136239.5;Parent=Physo136239;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 . repeat_region 187165 187172 . ? . description=dust scaffold_44 . repeat_region 196126 196175 . ? . description=dust scaffold_44 ensembl protein_coding_gene 193488 194832 . - . ID=Physo117593;biotype=protein_coding;external_name=estExt_Genewise1.C_440083;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 193488 194832 . - . ID=Physo117593;Parent=Physo117593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 193488 193994 . - 0 ID=Physo117593;Parent=Physo117593;rank=5 scaffold_44 . exon 193488 193994 . - . ID=Physo117593.5;Parent=Physo117593;constitutive=1;rank=5 scaffold_44 . CDS 194009 194212 . - 0 ID=Physo117593;Parent=Physo117593;rank=4 scaffold_44 . exon 194009 194212 . - . ID=Physo117593.4;Parent=Physo117593;constitutive=1;rank=4 scaffold_44 . CDS 194241 194686 . - 0 ID=Physo117593;Parent=Physo117593;rank=3 scaffold_44 . exon 194241 194686 . - . ID=Physo117593.3;Parent=Physo117593;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 194713 194735 . - 0 ID=Physo117593;Parent=Physo117593;rank=2 scaffold_44 . exon 194713 194735 . - . ID=Physo117593.2;Parent=Physo117593;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 194755 194816 . - 0 ID=Physo117593;Parent=Physo117593;rank=1 scaffold_44 . exon 194755 194832 . - . ID=Physo117593.1;Parent=Physo117593;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_44 ensembl protein_coding_gene 195268 195903 . - . ID=Physo136240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440041;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 195268 195903 . - . ID=Physo136240;Parent=Physo136240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 195268 195696 . - 0 ID=Physo136240;Parent=Physo136240;rank=2 scaffold_44 . exon 195268 195696 . - . ID=Physo136240.2;Parent=Physo136240;constitutive=1;rank=2 scaffold_44 . CDS 195757 195903 . - 0 ID=Physo136240;Parent=Physo136240;rank=1 scaffold_44 . exon 195757 195903 . - . ID=Physo136240.1;Parent=Physo136240;constitutive=1;rank=1 scaffold_44 . repeat_region 196176 200361 . - . description=Polinton-1_PI scaffold_44 . repeat_region 201192 201265 . - . description=Polinton-1_PI scaffold_44 . repeat_region 201280 201580 . - . description=Polinton-1_PI scaffold_44 . repeat_region 201641 201788 . + . description=Polinton-1_PI scaffold_44 . repeat_region 204479 204677 . - . description=Polinton-1_PI scaffold_44 . repeat_region 204692 204992 . - . description=Polinton-1_PI scaffold_44 . repeat_region 205053 205200 . + . description=Polinton-1_PI scaffold_44 ensembl protein_coding_gene 203583 204849 . - . ID=Physo117594;biotype=protein_coding;external_name=estExt_Genewise1.C_440084;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 203583 204849 . - . ID=Physo117594;Parent=Physo117594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 203583 204020 . - 0 ID=Physo117594;Parent=Physo117594;rank=2 scaffold_44 . exon 203583 204020 . - . ID=Physo117594.2;Parent=Physo117594;constitutive=1;rank=2 scaffold_44 . CDS 204032 204847 . - 0 ID=Physo117594;Parent=Physo117594;rank=1 scaffold_44 . exon 204032 204849 . - . ID=Physo117594.1;Parent=Physo117594;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 . biological_region 210181 210182 0.999 + . logic_name=eponine scaffold_44 . repeat_region 213763 213770 . ? . description=dust scaffold_44 . repeat_region 213972 213979 . ? . description=dust scaffold_44 . repeat_region 214447 214496 . ? . description=dust scaffold_44 . biological_region 214911 214915 0.999 - . logic_name=eponine scaffold_44 . repeat_region 215798 215806 . ? . description=dust scaffold_44 ensembl protein_coding_gene 207041 208168 . + . ID=Physo136242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440043;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 207041 208168 . + . ID=Physo136242;Parent=Physo136242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 207041 208168 . + 0 ID=Physo136242;Parent=Physo136242;rank=1 scaffold_44 . exon 207041 208168 . + . ID=Physo136242.1;Parent=Physo136242;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 208652 210385 . - . ID=Physo136243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440044;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 208652 210385 . - . ID=Physo136243;Parent=Physo136243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 208652 208702 . - 0 ID=Physo136243;Parent=Physo136243;rank=6 scaffold_44 . exon 208652 208702 . - . ID=Physo136243.6;Parent=Physo136243;constitutive=1;rank=6 scaffold_44 . CDS 208775 209053 . - 0 ID=Physo136243;Parent=Physo136243;rank=5 scaffold_44 . exon 208775 209053 . - . ID=Physo136243.5;Parent=Physo136243;constitutive=1;rank=5 scaffold_44 . CDS 209139 209478 . - 0 ID=Physo136243;Parent=Physo136243;rank=4 scaffold_44 . exon 209139 209478 . - . ID=Physo136243.4;Parent=Physo136243;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 209558 209636 . - 0 ID=Physo136243;Parent=Physo136243;rank=3 scaffold_44 . exon 209558 209636 . - . ID=Physo136243.3;Parent=Physo136243;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_44 . CDS 209802 209891 . - 0 ID=Physo136243;Parent=Physo136243;rank=2 scaffold_44 . exon 209802 209891 . - . ID=Physo136243.2;Parent=Physo136243;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 210187 210385 . - 0 ID=Physo136243;Parent=Physo136243;rank=1 scaffold_44 . exon 210187 210385 . - . ID=Physo136243.1;Parent=Physo136243;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . repeat_region 225020 225055 . ? . description=trf scaffold_44 . repeat_region 225480 225523 . ? . description=trf scaffold_44 . repeat_region 225488 225520 . ? . description=trf scaffold_44 ensembl protein_coding_gene 219250 220116 . - . ID=Physo117597;biotype=protein_coding;external_name=estExt_Genewise1.C_440087;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 219250 220116 . - . ID=Physo117597;Parent=Physo117597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 219250 220059 . - 0 ID=Physo117597;Parent=Physo117597;rank=1 scaffold_44 . exon 219250 220116 . - . ID=Physo117597.1;Parent=Physo117597;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 ensembl protein_coding_gene 221094 221669 . - . ID=Physo117600;biotype=protein_coding;external_name=estExt_Genewise1.C_440090;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 221094 221669 . - . ID=Physo117600;Parent=Physo117600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 221094 221540 . - 0 ID=Physo117600;Parent=Physo117600;rank=1 scaffold_44 . exon 221094 221669 . - . ID=Physo117600.1;Parent=Physo117600;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 ensembl protein_coding_gene 224700 225816 . - . ID=Physo136245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440046;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 224700 225816 . - . ID=Physo136245;Parent=Physo136245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 224700 224756 . - 0 ID=Physo136245;Parent=Physo136245;rank=3 scaffold_44 . exon 224700 224756 . - . ID=Physo136245.3;Parent=Physo136245;constitutive=1;rank=3 scaffold_44 . CDS 224924 225735 . - 0 ID=Physo136245;Parent=Physo136245;rank=2 scaffold_44 . exon 224924 225735 . - . ID=Physo136245.2;Parent=Physo136245;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 225780 225816 . - 0 ID=Physo136245;Parent=Physo136245;rank=1 scaffold_44 . exon 225780 225816 . - . ID=Physo136245.1;Parent=Physo136245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 226024 227754 . - . ID=Physo136246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440047;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 226024 227754 . - . ID=Physo136246;Parent=Physo136246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 226024 227754 . - 0 ID=Physo136246;Parent=Physo136246;rank=1 scaffold_44 . exon 226024 227754 . - . ID=Physo136246.1;Parent=Physo136246;constitutive=1;rank=1 scaffold_44 . biological_region 226313 226320 0.999 + . logic_name=eponine scaffold_44 . biological_region 226766 226766 0.999 - . logic_name=eponine scaffold_44 . repeat_region 229321 229329 . ? . description=dust scaffold_44 . repeat_region 231855 231862 . ? . description=dust scaffold_44 . biological_region 235428 235432 0.999 - . logic_name=eponine scaffold_44 . biological_region 235605 235608 0.999 - . logic_name=eponine scaffold_44 . biological_region 235619 235622 0.999 + . logic_name=eponine scaffold_44 . biological_region 235642 235644 0.999 + . logic_name=eponine scaffold_44 . biological_region 235660 235666 0.999 + . logic_name=eponine scaffold_44 . biological_region 235717 235721 0.999 + . logic_name=eponine scaffold_44 . biological_region 235772 235779 0.999 - . logic_name=eponine scaffold_44 . biological_region 235819 235821 0.999 - . logic_name=eponine scaffold_44 . biological_region 235877 235880 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 229999 231200 . + . ID=Physo136247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440048;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 229999 231200 . + . ID=Physo136247;Parent=Physo136247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 229999 231132 . + 0 ID=Physo136247;Parent=Physo136247;rank=1 scaffold_44 . exon 229999 231132 . + . ID=Physo136247.1;Parent=Physo136247;constitutive=1;rank=1 scaffold_44 . CDS 231186 231200 . + 0 ID=Physo136247;Parent=Physo136247;rank=2 scaffold_44 . exon 231186 231200 . + . ID=Physo136247.2;Parent=Physo136247;constitutive=1;rank=2 scaffold_44 ensembl protein_coding_gene 233880 236971 . + . ID=Physo136248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440049;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 233880 236971 . + . ID=Physo136248;Parent=Physo136248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 233880 234911 . + 0 ID=Physo136248;Parent=Physo136248;rank=1 scaffold_44 . exon 233880 234911 . + . ID=Physo136248.1;Parent=Physo136248;constitutive=1;rank=1 scaffold_44 . CDS 235124 235242 . + 0 ID=Physo136248;Parent=Physo136248;rank=2 scaffold_44 . exon 235124 235242 . + . ID=Physo136248.2;Parent=Physo136248;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_44 . CDS 235313 235443 . + 0 ID=Physo136248;Parent=Physo136248;rank=3 scaffold_44 . exon 235313 235443 . + . ID=Physo136248.3;Parent=Physo136248;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 235652 235964 . + 0 ID=Physo136248;Parent=Physo136248;rank=4 scaffold_44 . exon 235652 235964 . + . ID=Physo136248.4;Parent=Physo136248;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_44 . CDS 236058 236266 . + 0 ID=Physo136248;Parent=Physo136248;rank=5 scaffold_44 . CDS 236348 236526 . + 0 ID=Physo136248;Parent=Physo136248;rank=6 scaffold_44 . CDS 236602 236685 . + 0 ID=Physo136248;Parent=Physo136248;rank=7 scaffold_44 . CDS 236762 236971 . + 0 ID=Physo136248;Parent=Physo136248;rank=8 scaffold_44 . repeat_region 236935 236959 . ? . description=trf scaffold_44 . repeat_region 237572 237603 . ? . description=trf scaffold_44 . exon 236058 236266 . + . ID=Physo136248.5;Parent=Physo136248;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_44 . exon 236348 236526 . + . ID=Physo136248.6;Parent=Physo136248;constitutive=1;ensembl_phase=1;rank=6 scaffold_44 . exon 236602 236685 . + . ID=Physo136248.7;Parent=Physo136248;constitutive=1;rank=7 scaffold_44 . exon 236762 236971 . + . ID=Physo136248.8;Parent=Physo136248;constitutive=1;rank=8 scaffold_44 ensembl protein_coding_gene 237305 238794 . + . ID=Physo136249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440050;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 237305 238794 . + . ID=Physo136249;Parent=Physo136249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 237305 237560 . + 0 ID=Physo136249;Parent=Physo136249;rank=1 scaffold_44 . exon 237305 237560 . + . ID=Physo136249.1;Parent=Physo136249;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 237677 238794 . + 0 ID=Physo136249;Parent=Physo136249;rank=2 scaffold_44 . exon 237677 238794 . + . ID=Physo136249.2;Parent=Physo136249;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 ensembl protein_coding_gene 238950 241141 . - . ID=Physo136250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440051;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 238950 241141 . - . ID=Physo136250;Parent=Physo136250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 238950 239282 . - 0 ID=Physo136250;Parent=Physo136250;rank=4 scaffold_44 . exon 238950 239282 . - . ID=Physo136250.4;Parent=Physo136250;constitutive=1;rank=4 scaffold_44 . CDS 239359 239531 . - 0 ID=Physo136250;Parent=Physo136250;rank=3 scaffold_44 . exon 239359 239531 . - . ID=Physo136250.3;Parent=Physo136250;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 239641 239645 . - 0 ID=Physo136250;Parent=Physo136250;rank=2 scaffold_44 . exon 239641 239645 . - . ID=Physo136250.2;Parent=Physo136250;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 239727 241141 . - 0 ID=Physo136250;Parent=Physo136250;rank=1 scaffold_44 . exon 239727 241141 . - . ID=Physo136250.1;Parent=Physo136250;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 241943 244678 . + . ID=Physo136251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440052;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 241943 244678 . + . ID=Physo136251;Parent=Physo136251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 241943 244582 . + 0 ID=Physo136251;Parent=Physo136251;rank=1 scaffold_44 . exon 241943 244678 . + . ID=Physo136251.1;Parent=Physo136251;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_44 . repeat_region 247026 247075 . ? . description=dust scaffold_44 . biological_region 248485 248486 0.999 - . logic_name=eponine scaffold_44 . biological_region 248530 248534 0.999 - . logic_name=eponine scaffold_44 . repeat_region 250215 250264 . ? . description=dust scaffold_44 . biological_region 251024 251025 0.999 - . logic_name=eponine scaffold_44 . repeat_region 252209 252258 . ? . description=dust scaffold_44 . repeat_region 252840 252850 . ? . description=dust scaffold_44 . biological_region 253019 253023 0.999 - . logic_name=eponine scaffold_44 . biological_region 253097 253105 0.999 + . logic_name=eponine scaffold_44 . biological_region 253180 253183 0.999 - . logic_name=eponine scaffold_44 . biological_region 253196 253197 0.999 - . logic_name=eponine scaffold_44 . biological_region 253242 253248 0.999 - . logic_name=eponine scaffold_44 . biological_region 253252 253253 0.999 - . logic_name=eponine scaffold_44 . biological_region 253271 253272 0.999 - . logic_name=eponine scaffold_44 . biological_region 253389 253392 0.999 - . logic_name=eponine scaffold_44 . biological_region 253444 253448 0.999 + . logic_name=eponine scaffold_44 . biological_region 255475 255476 0.999 - . logic_name=eponine scaffold_44 . biological_region 255520 255524 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 252864 255599 . + . ID=Physo108930;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_440003;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 252864 255599 . + . ID=Physo108930;Parent=Physo108930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 252864 255503 . + 0 ID=Physo108930;Parent=Physo108930;rank=1 scaffold_44 . exon 252864 255599 . + . ID=Physo108930.1;Parent=Physo108930;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_44 ensembl protein_coding_gene 247186 248609 . + . ID=Physo136252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440053;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 247186 248609 . + . ID=Physo136252;Parent=Physo136252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 247186 248609 . + . ID=Physo136252.1;Parent=Physo136252;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_44 . CDS 247302 248513 . + 0 ID=Physo136252;Parent=Physo136252;rank=1 scaffold_44 . repeat_region 259922 259977 . ? . description=trf scaffold_44 ensembl protein_coding_gene 259507 261114 . + . ID=Physo136254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440055;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 259507 261114 . + . ID=Physo136254;Parent=Physo136254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 259507 261114 . + 0 ID=Physo136254;Parent=Physo136254;rank=1 scaffold_44 . exon 259507 261114 . + . ID=Physo136254.1;Parent=Physo136254;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 261315 269335 . - . ID=Physo136255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440056;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 261315 269335 . - . ID=Physo136255;Parent=Physo136255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 261315 261455 . - 0 ID=Physo136255;Parent=Physo136255;rank=7 scaffold_44 . exon 261315 261455 . - . ID=Physo136255.7;Parent=Physo136255;constitutive=1;rank=7 scaffold_44 . CDS 261491 266785 . - 0 ID=Physo136255;Parent=Physo136255;rank=6 scaffold_44 . exon 261491 266785 . - . ID=Physo136255.6;Parent=Physo136255;constitutive=1;rank=6 scaffold_44 . CDS 266808 266847 . - 0 ID=Physo136255;Parent=Physo136255;rank=5 scaffold_44 . CDS 266868 267361 . - 0 ID=Physo136255;Parent=Physo136255;rank=4 scaffold_44 . CDS 267467 267639 . - 0 ID=Physo136255;Parent=Physo136255;rank=3 scaffold_44 . CDS 267757 268763 . - 0 ID=Physo136255;Parent=Physo136255;rank=2 scaffold_44 . CDS 268815 269335 . - 0 ID=Physo136255;Parent=Physo136255;rank=1 scaffold_44 . biological_region 265773 265777 0.999 - . logic_name=eponine scaffold_44 . biological_region 266304 266306 0.999 + . logic_name=eponine scaffold_44 . biological_region 266320 266324 0.999 - . logic_name=eponine scaffold_44 . biological_region 266937 266943 0.999 - . logic_name=eponine scaffold_44 . biological_region 268590 268594 0.999 - . logic_name=eponine scaffold_44 . biological_region 268786 268787 0.999 - . logic_name=eponine scaffold_44 . biological_region 269253 269257 0.999 - . logic_name=eponine scaffold_44 . biological_region 272261 272263 0.999 - . logic_name=eponine scaffold_44 . biological_region 273173 273175 0.999 + . logic_name=eponine scaffold_44 . exon 266808 266847 . - . ID=Physo136255.5;Parent=Physo136255;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 . exon 266868 267361 . - . ID=Physo136255.4;Parent=Physo136255;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_44 . exon 267467 267639 . - . ID=Physo136255.3;Parent=Physo136255;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 . exon 267757 268763 . - . ID=Physo136255.2;Parent=Physo136255;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . exon 268815 269335 . - . ID=Physo136255.1;Parent=Physo136255;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . repeat_region 276501 276555 . ? . description=dust scaffold_44 . repeat_region 276507 276561 . ? . description=trf scaffold_44 . repeat_region 276710 276757 . ? . description=trf scaffold_44 . repeat_region 277660 277702 . ? . description=trf scaffold_44 . repeat_region 279188 279195 . ? . description=dust scaffold_44 . repeat_region 282164 282207 . ? . description=trf scaffold_44 ensembl protein_coding_gene 279462 280850 . - . ID=Physo136256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440057;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 279462 280850 . - . ID=Physo136256;Parent=Physo136256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 279462 279695 . - 0 ID=Physo136256;Parent=Physo136256;rank=5 scaffold_44 . exon 279462 279695 . - . ID=Physo136256.5;Parent=Physo136256;constitutive=1;rank=5 scaffold_44 . CDS 279815 279873 . - 0 ID=Physo136256;Parent=Physo136256;rank=4 scaffold_44 . exon 279815 279873 . - . ID=Physo136256.4;Parent=Physo136256;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 279950 280025 . - 0 ID=Physo136256;Parent=Physo136256;rank=3 scaffold_44 . exon 279950 280025 . - . ID=Physo136256.3;Parent=Physo136256;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 280108 280684 . - 0 ID=Physo136256;Parent=Physo136256;rank=2 scaffold_44 . exon 280108 280684 . - . ID=Physo136256.2;Parent=Physo136256;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 280780 280850 . - 0 ID=Physo136256;Parent=Physo136256;rank=1 scaffold_44 . exon 280780 280850 . - . ID=Physo136256.1;Parent=Physo136256;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 ensembl protein_coding_gene 281449 282903 . - . ID=Physo136257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440058;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 281449 282903 . - . ID=Physo136257;Parent=Physo136257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 281449 281867 . - 0 ID=Physo136257;Parent=Physo136257;rank=6 scaffold_44 . exon 281449 281867 . - . ID=Physo136257.6;Parent=Physo136257;constitutive=1;ensembl_phase=1;rank=6 scaffold_44 . CDS 281951 282084 . - 0 ID=Physo136257;Parent=Physo136257;rank=5 scaffold_44 . exon 281951 282084 . - . ID=Physo136257.5;Parent=Physo136257;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 282241 282433 . - 0 ID=Physo136257;Parent=Physo136257;rank=4 scaffold_44 . exon 282241 282433 . - . ID=Physo136257.4;Parent=Physo136257;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_44 . CDS 282556 282606 . - 0 ID=Physo136257;Parent=Physo136257;rank=3 scaffold_44 . exon 282556 282606 . - . ID=Physo136257.3;Parent=Physo136257;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 282673 282746 . - 0 ID=Physo136257;Parent=Physo136257;rank=2 scaffold_44 . exon 282673 282746 . - . ID=Physo136257.2;Parent=Physo136257;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 282767 282903 . - 0 ID=Physo136257;Parent=Physo136257;rank=1 scaffold_44 . exon 282767 282903 . - . ID=Physo136257.1;Parent=Physo136257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . biological_region 286273 286273 0.999 + . logic_name=eponine scaffold_44 . biological_region 286413 286416 0.999 + . logic_name=eponine scaffold_44 . biological_region 286433 286433 0.999 + . logic_name=eponine scaffold_44 . repeat_region 286805 286918 . - . description=GypsyPi-1c_I-int scaffold_44 . repeat_region 287347 289560 . - . description=GypsyPi-1c_I-int scaffold_44 . biological_region 288206 288210 0.999 + . logic_name=eponine scaffold_44 . biological_region 288416 288419 0.999 + . logic_name=eponine scaffold_44 . biological_region 289507 289508 0.999 - . logic_name=eponine scaffold_44 . repeat_region 289595 289727 . - . description=GypsyPi-1c_I-int scaffold_44 . biological_region 290072 290076 0.999 - . logic_name=eponine scaffold_44 . biological_region 294036 294042 0.999 - . logic_name=eponine scaffold_44 . biological_region 294091 294097 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 286577 291438 . - . ID=Physo136258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440059;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 286577 291438 . - . ID=Physo136258;Parent=Physo136258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 286577 286950 . - 0 ID=Physo136258;Parent=Physo136258;rank=4 scaffold_44 . exon 286577 286950 . - . ID=Physo136258.4;Parent=Physo136258;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 287026 289520 . - 0 ID=Physo136258;Parent=Physo136258;rank=3 scaffold_44 . exon 287026 289520 . - . ID=Physo136258.3;Parent=Physo136258;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 289632 290346 . - 0 ID=Physo136258;Parent=Physo136258;rank=2 scaffold_44 . exon 289632 290346 . - . ID=Physo136258.2;Parent=Physo136258;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_44 . CDS 290937 291438 . - 0 ID=Physo136258;Parent=Physo136258;rank=1 scaffold_44 . exon 290937 291438 . - . ID=Physo136258.1;Parent=Physo136258;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . repeat_region 298337 298373 . ? . description=trf scaffold_44 . repeat_region 300222 300232 . ? . description=dust scaffold_44 . repeat_region 300755 300811 . + . description=(TAAG)n scaffold_44 . repeat_region 300770 300811 . ? . description=dust scaffold_44 . repeat_region 300770 300811 . ? . description=trf scaffold_44 . repeat_region 300920 300953 . ? . description=trf scaffold_44 . repeat_region 302253 302302 . ? . description=dust scaffold_44 . repeat_region 303649 304449 . ? . description=dust scaffold_44 ensembl tRNA_gene 299087 299159 . - . ID=EPrPSOG00000000035;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_44 ensembl transcript 299087 299159 . - . ID=EPrPSOT00000000035;Parent=EPrPSOG00000000035;biotype=tRNA;logic_name=ncrna_eg scaffold_44 . exon 299087 299159 . - . ID=EPrPSOE00000000035;Parent=EPrPSOT00000000035;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 300817 302383 . + . ID=Physo136259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440060;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 300817 302383 . + . ID=Physo136259;Parent=Physo136259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 300817 300820 . + 0 ID=Physo136259;Parent=Physo136259;rank=1 scaffold_44 . exon 300817 300820 . + . ID=Physo136259.1;Parent=Physo136259;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 300893 301176 . + 0 ID=Physo136259;Parent=Physo136259;rank=2 scaffold_44 . exon 300893 301176 . + . ID=Physo136259.2;Parent=Physo136259;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 301254 302171 . + 0 ID=Physo136259;Parent=Physo136259;rank=3 scaffold_44 . exon 301254 302171 . + . ID=Physo136259.3;Parent=Physo136259;constitutive=1;rank=3 scaffold_44 . CDS 302357 302383 . + 0 ID=Physo136259;Parent=Physo136259;rank=4 scaffold_44 . exon 302357 302383 . + . ID=Physo136259.4;Parent=Physo136259;constitutive=1;rank=4 scaffold_44 ensembl protein_coding_gene 302645 303615 . - . ID=Physo136260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440061;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 302645 303615 . - . ID=Physo136260;Parent=Physo136260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 302645 302651 . - 0 ID=Physo136260;Parent=Physo136260;rank=2 scaffold_44 . exon 302645 302651 . - . ID=Physo136260.2;Parent=Physo136260;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 302747 303615 . - 0 ID=Physo136260;Parent=Physo136260;rank=1 scaffold_44 . exon 302747 303615 . - . ID=Physo136260.1;Parent=Physo136260;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . repeat_region 305576 305811 . - . description=GypsyPi-1c_I-int scaffold_44 . biological_region 306156 306160 0.999 - . logic_name=eponine scaffold_44 . biological_region 309740 309743 0.999 + . logic_name=eponine scaffold_44 . biological_region 309762 309766 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 305715 306182 . - . ID=Physo136261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440062;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 305715 306182 . - . ID=Physo136261;Parent=Physo136261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 305715 306182 . - 0 ID=Physo136261;Parent=Physo136261;rank=1 scaffold_44 . exon 305715 306182 . - . ID=Physo136261.1;Parent=Physo136261;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 308121 309811 . - . ID=Physo136262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440063;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 308121 309811 . - . ID=Physo136262;Parent=Physo136262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 308121 308153 . - 0 ID=Physo136262;Parent=Physo136262;rank=5 scaffold_44 . exon 308121 308153 . - . ID=Physo136262.5;Parent=Physo136262;constitutive=1;rank=5 scaffold_44 . CDS 308374 308814 . - 0 ID=Physo136262;Parent=Physo136262;rank=4 scaffold_44 . exon 308374 308814 . - . ID=Physo136262.4;Parent=Physo136262;constitutive=1;rank=4 scaffold_44 . CDS 308860 309096 . - 0 ID=Physo136262;Parent=Physo136262;rank=3 scaffold_44 . exon 308860 309096 . - . ID=Physo136262.3;Parent=Physo136262;constitutive=1;rank=3 scaffold_44 . CDS 309207 309636 . - 0 ID=Physo136262;Parent=Physo136262;rank=2 scaffold_44 . exon 309207 309636 . - . ID=Physo136262.2;Parent=Physo136262;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 309699 309811 . - 0 ID=Physo136262;Parent=Physo136262;rank=1 scaffold_44 . exon 309699 309811 . - . ID=Physo136262.1;Parent=Physo136262;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . repeat_region 313556 318538 . ? . description=dust scaffold_44 . repeat_region 318539 324993 . ? . description=dust scaffold_44 . repeat_region 327133 327321 . + . description=(CAG)n scaffold_44 . repeat_region 327158 327183 . ? . description=trf scaffold_44 . repeat_region 327189 327248 . ? . description=trf scaffold_44 . repeat_region 327377 327519 . + . description=(CAG)n scaffold_44 . repeat_region 327392 327427 . ? . description=trf scaffold_44 . repeat_region 327451 327524 . ? . description=trf scaffold_44 . biological_region 327562 327569 0.999 + . logic_name=eponine scaffold_44 . biological_region 328914 328916 0.999 - . logic_name=eponine scaffold_44 . biological_region 329114 329118 0.999 - . logic_name=eponine scaffold_44 . biological_region 329133 329134 0.999 - . logic_name=eponine scaffold_44 . biological_region 329157 329161 0.999 - . logic_name=eponine scaffold_44 . biological_region 330105 330108 0.999 + . logic_name=eponine scaffold_44 . biological_region 330521 330521 0.999 - . logic_name=eponine scaffold_44 . biological_region 331820 331824 0.999 - . logic_name=eponine scaffold_44 . biological_region 331889 331893 0.999 - . logic_name=eponine scaffold_44 . biological_region 333296 333297 0.999 - . logic_name=eponine scaffold_44 . biological_region 333313 333316 0.999 + . logic_name=eponine scaffold_44 ensembl protein_coding_gene 327107 328244 . + . ID=Physo136263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440064;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 327107 328244 . + . ID=Physo136263;Parent=Physo136263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 327107 327938 . + 0 ID=Physo136263;Parent=Physo136263;rank=1 scaffold_44 . exon 327107 327938 . + . ID=Physo136263.1;Parent=Physo136263;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 328027 328244 . + 0 ID=Physo136263;Parent=Physo136263;rank=2 scaffold_44 . exon 328027 328244 . + . ID=Physo136263.2;Parent=Physo136263;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 ensembl protein_coding_gene 328844 333986 . + . ID=Physo136264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440065;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 328844 333986 . + . ID=Physo136264;Parent=Physo136264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 328844 329280 . + 0 ID=Physo136264;Parent=Physo136264;rank=1 scaffold_44 . exon 328844 329280 . + . ID=Physo136264.1;Parent=Physo136264;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 329345 331357 . + 0 ID=Physo136264;Parent=Physo136264;rank=2 scaffold_44 . exon 329345 331357 . + . ID=Physo136264.2;Parent=Physo136264;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_44 . CDS 331573 331968 . + 0 ID=Physo136264;Parent=Physo136264;rank=3 scaffold_44 . exon 331573 331968 . + . ID=Physo136264.3;Parent=Physo136264;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_44 . CDS 332040 332145 . + 0 ID=Physo136264;Parent=Physo136264;rank=4 scaffold_44 . exon 332040 332145 . + . ID=Physo136264.4;Parent=Physo136264;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 332284 333909 . + 0 ID=Physo136264;Parent=Physo136264;rank=5 scaffold_44 . exon 332284 333909 . + . ID=Physo136264.5;Parent=Physo136264;constitutive=1;rank=5 scaffold_44 . CDS 333972 333986 . + 0 ID=Physo136264;Parent=Physo136264;rank=6 scaffold_44 . exon 333972 333986 . + . ID=Physo136264.6;Parent=Physo136264;constitutive=1;rank=6 scaffold_44 ensembl protein_coding_gene 334355 336130 . - . ID=Physo136265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440066;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 334355 336130 . - . ID=Physo136265;Parent=Physo136265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 334355 336130 . - 0 ID=Physo136265;Parent=Physo136265;rank=1 scaffold_44 . exon 334355 336130 . - . ID=Physo136265.1;Parent=Physo136265;constitutive=1;rank=1 scaffold_44 . repeat_region 338233 338251 . ? . description=dust scaffold_44 . repeat_region 344216 344239 . ? . description=dust scaffold_44 ensembl protein_coding_gene 339961 340332 . - . ID=Physo136266;biotype=protein_coding;description=PsAvh269 [Source:UniProtKB/TrEMBL%3BAcc:E0W569];external_name=estExt_fgenesh1_pg.C_440067;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 339961 340332 . - . ID=Physo136266;Parent=Physo136266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 339961 340332 . - 0 ID=Physo136266;Parent=Physo136266;rank=1 scaffold_44 . exon 339961 340332 . - . ID=Physo136266.1;Parent=Physo136266;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 341661 342341 . + . ID=Physo136267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440068;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 341661 342341 . + . ID=Physo136267;Parent=Physo136267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 341661 342341 . + 0 ID=Physo136267;Parent=Physo136267;rank=1 scaffold_44 . exon 341661 342341 . + . ID=Physo136267.1;Parent=Physo136267;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 343786 344785 . + . ID=Physo136268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440069;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 343786 344785 . + . ID=Physo136268;Parent=Physo136268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 343786 344086 . + 0 ID=Physo136268;Parent=Physo136268;rank=1 scaffold_44 . exon 343786 344086 . + . ID=Physo136268.1;Parent=Physo136268;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 344247 344785 . + 0 ID=Physo136268;Parent=Physo136268;rank=2 scaffold_44 . repeat_region 345513 345537 . ? . description=trf scaffold_44 . repeat_region 346226 346276 . ? . description=trf scaffold_44 . repeat_region 346318 346348 . ? . description=trf scaffold_44 . repeat_region 346353 346390 . ? . description=trf scaffold_44 . biological_region 346608 346610 0.999 - . logic_name=eponine scaffold_44 . repeat_region 350187 350237 . ? . description=trf scaffold_44 . repeat_region 350279 350309 . ? . description=trf scaffold_44 . repeat_region 350314 350351 . ? . description=trf scaffold_44 . biological_region 352347 352348 0.999 + . logic_name=eponine scaffold_44 . exon 344247 344785 . + . ID=Physo136268.2;Parent=Physo136268;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 ensembl protein_coding_gene 346451 347432 . - . ID=Physo136269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440070;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 346451 347432 . - . ID=Physo136269;Parent=Physo136269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 346451 347404 . - 0 ID=Physo136269;Parent=Physo136269;rank=1 scaffold_44 . exon 346451 347432 . - . ID=Physo136269.1;Parent=Physo136269;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 ensembl protein_coding_gene 351498 353906 . + . ID=Physo136270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440071;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 351498 353906 . + . ID=Physo136270;Parent=Physo136270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 351498 351628 . + 0 ID=Physo136270;Parent=Physo136270;rank=1 scaffold_44 . exon 351498 351628 . + . ID=Physo136270.1;Parent=Physo136270;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 351825 351894 . + 0 ID=Physo136270;Parent=Physo136270;rank=2 scaffold_44 . exon 351825 351894 . + . ID=Physo136270.2;Parent=Physo136270;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 352117 353213 . + 0 ID=Physo136270;Parent=Physo136270;rank=3 scaffold_44 . exon 352117 353213 . + . ID=Physo136270.3;Parent=Physo136270;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . CDS 353288 353906 . + 0 ID=Physo136270;Parent=Physo136270;rank=4 scaffold_44 . exon 353288 353906 . + . ID=Physo136270.4;Parent=Physo136270;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 ensembl protein_coding_gene 354040 355969 . - . ID=Physo136271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440072;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 354040 355969 . - . ID=Physo136271;Parent=Physo136271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 354040 355798 . - 0 ID=Physo136271;Parent=Physo136271;rank=2 scaffold_44 . exon 354040 355798 . - . ID=Physo136271.2;Parent=Physo136271;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 355867 355916 . - 0 ID=Physo136271;Parent=Physo136271;rank=1 scaffold_44 . repeat_region 361172 361179 . ? . description=dust scaffold_44 . repeat_region 362042 362051 . ? . description=dust scaffold_44 . repeat_region 362133 362169 . ? . description=dust scaffold_44 . repeat_region 363087 363109 . ? . description=dust scaffold_44 . repeat_region 363215 363224 . ? . description=dust scaffold_44 . repeat_region 363274 363301 . ? . description=dust scaffold_44 . exon 355867 355969 . - . ID=Physo136271.1;Parent=Physo136271;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_44 ensembl protein_coding_gene 357263 359360 . + . ID=Physo136272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440073;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 357263 359360 . + . ID=Physo136272;Parent=Physo136272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 357263 357320 . + 0 ID=Physo136272;Parent=Physo136272;rank=1 scaffold_44 . exon 357263 357320 . + . ID=Physo136272.1;Parent=Physo136272;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 357393 357436 . + 0 ID=Physo136272;Parent=Physo136272;rank=2 scaffold_44 . exon 357393 357436 . + . ID=Physo136272.2;Parent=Physo136272;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 357527 358167 . + 0 ID=Physo136272;Parent=Physo136272;rank=3 scaffold_44 . exon 357527 358167 . + . ID=Physo136272.3;Parent=Physo136272;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . CDS 358259 358442 . + 0 ID=Physo136272;Parent=Physo136272;rank=4 scaffold_44 . exon 358259 358442 . + . ID=Physo136272.4;Parent=Physo136272;constitutive=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 358503 358639 . + 0 ID=Physo136272;Parent=Physo136272;rank=5 scaffold_44 . exon 358503 358639 . + . ID=Physo136272.5;Parent=Physo136272;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_44 . CDS 358780 359246 . + 0 ID=Physo136272;Parent=Physo136272;rank=6 scaffold_44 . exon 358780 359246 . + . ID=Physo136272.6;Parent=Physo136272;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_44 . CDS 359353 359360 . + 0 ID=Physo136272;Parent=Physo136272;rank=7 scaffold_44 . exon 359353 359360 . + . ID=Physo136272.7;Parent=Physo136272;constitutive=1;ensembl_phase=1;rank=7 scaffold_44 ensembl protein_coding_gene 361568 367403 . + . ID=Physo136273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440074;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 361568 367403 . + . ID=Physo136273;Parent=Physo136273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 361568 361680 . + . ID=Physo136273.1;Parent=Physo136273;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 . CDS 361651 361680 . + 0 ID=Physo136273;Parent=Physo136273;rank=1 scaffold_44 . CDS 361760 361800 . + 0 ID=Physo136273;Parent=Physo136273;rank=2 scaffold_44 . exon 361760 361800 . + . ID=Physo136273.2;Parent=Physo136273;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_44 . CDS 361875 362021 . + 0 ID=Physo136273;Parent=Physo136273;rank=3 scaffold_44 . exon 361875 362021 . + . ID=Physo136273.3;Parent=Physo136273;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_44 . CDS 362107 362768 . + 0 ID=Physo136273;Parent=Physo136273;rank=4 scaffold_44 . exon 362107 362768 . + . ID=Physo136273.4;Parent=Physo136273;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 362862 363067 . + 0 ID=Physo136273;Parent=Physo136273;rank=5 scaffold_44 . exon 362862 363067 . + . ID=Physo136273.5;Parent=Physo136273;constitutive=1;ensembl_phase=1;rank=5 scaffold_44 . CDS 363449 363560 . + 0 ID=Physo136273;Parent=Physo136273;rank=6 scaffold_44 . exon 363449 363560 . + . ID=Physo136273.6;Parent=Physo136273;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_44 . CDS 363713 364006 . + 0 ID=Physo136273;Parent=Physo136273;rank=7 scaffold_44 . exon 363713 364006 . + . ID=Physo136273.7;Parent=Physo136273;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_44 . CDS 364088 364219 . + 0 ID=Physo136273;Parent=Physo136273;rank=8 scaffold_44 . CDS 364294 364422 . + 0 ID=Physo136273;Parent=Physo136273;rank=9 scaffold_44 . CDS 364490 364618 . + 0 ID=Physo136273;Parent=Physo136273;rank=10 scaffold_44 . CDS 364689 366354 . + 0 ID=Physo136273;Parent=Physo136273;rank=11 scaffold_44 . CDS 366661 366966 . + 0 ID=Physo136273;Parent=Physo136273;rank=12 scaffold_44 . CDS 367037 367403 . + 0 ID=Physo136273;Parent=Physo136273;rank=13 scaffold_44 . biological_region 364957 364959 0.999 + . logic_name=eponine scaffold_44 . biological_region 369051 369053 0.999 - . logic_name=eponine scaffold_44 . biological_region 369354 369358 0.999 + . logic_name=eponine scaffold_44 . biological_region 369364 369365 0.999 - . logic_name=eponine scaffold_44 . biological_region 369465 369467 0.999 - . logic_name=eponine scaffold_44 . biological_region 369511 369515 0.999 - . logic_name=eponine scaffold_44 . biological_region 369568 369571 0.999 + . logic_name=eponine scaffold_44 . biological_region 370263 370266 0.999 + . logic_name=eponine scaffold_44 . biological_region 370489 370491 0.999 - . logic_name=eponine scaffold_44 . biological_region 370557 370558 0.999 - . logic_name=eponine scaffold_44 . biological_region 371777 371778 0.999 + . logic_name=eponine scaffold_44 . biological_region 371865 371867 0.999 - . logic_name=eponine scaffold_44 . biological_region 371919 371920 0.999 + . logic_name=eponine scaffold_44 . biological_region 371935 371941 0.999 - . logic_name=eponine scaffold_44 . biological_region 372504 372509 0.999 + . logic_name=eponine scaffold_44 . biological_region 373582 373586 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 367423 370442 . - . ID=Physo108931;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_440004;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 367423 370442 . - . ID=Physo108931;Parent=Physo108931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 367423 367812 . - . ID=Physo108931.2;Parent=Physo108931;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_44 . CDS 367512 367812 . - 0 ID=Physo108931;Parent=Physo108931;rank=2 scaffold_44 . CDS 367894 370436 . - 0 ID=Physo108931;Parent=Physo108931;rank=1 scaffold_44 . exon 367894 370442 . - . ID=Physo108931.1;Parent=Physo108931;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_44 . exon 364088 364219 . + . ID=Physo136273.8;Parent=Physo136273;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_44 . exon 364294 364422 . + . ID=Physo136273.9;Parent=Physo136273;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_44 . exon 364490 364618 . + . ID=Physo136273.10;Parent=Physo136273;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_44 . exon 364689 366354 . + . ID=Physo136273.11;Parent=Physo136273;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_44 . exon 366661 366966 . + . ID=Physo136273.12;Parent=Physo136273;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_44 . exon 367037 367403 . + . ID=Physo136273.13;Parent=Physo136273;constitutive=1;ensembl_phase=2;rank=13 scaffold_44 ensembl protein_coding_gene 371660 372172 . + . ID=Physo136275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440076;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 371660 372172 . + . ID=Physo136275;Parent=Physo136275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 371660 372172 . + . ID=Physo136275.1;Parent=Physo136275;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_44 . CDS 371704 372075 . + 0 ID=Physo136275;Parent=Physo136275;rank=1 scaffold_44 ensembl protein_coding_gene 372991 374099 . + . ID=Physo136276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440077;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 372991 374099 . + . ID=Physo136276;Parent=Physo136276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 372991 373494 . + . ID=Physo136276.1;Parent=Physo136276;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 . CDS 373144 373494 . + 0 ID=Physo136276;Parent=Physo136276;rank=1 scaffold_44 . CDS 373529 373846 . + 0 ID=Physo136276;Parent=Physo136276;rank=2 scaffold_44 . exon 373529 374099 . + . ID=Physo136276.2;Parent=Physo136276;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_44 . repeat_region 380619 380667 . ? . description=trf scaffold_44 ensembl protein_coding_gene 374287 377631 . + . ID=Physo136277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440078;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 374287 377631 . + . ID=Physo136277;Parent=Physo136277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 374287 375965 . + 0 ID=Physo136277;Parent=Physo136277;rank=1 scaffold_44 . exon 374287 375965 . + . ID=Physo136277.1;Parent=Physo136277;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 376239 376464 . + 0 ID=Physo136277;Parent=Physo136277;rank=2 scaffold_44 . exon 376239 376464 . + . ID=Physo136277.2;Parent=Physo136277;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 376606 377559 . + 0 ID=Physo136277;Parent=Physo136277;rank=3 scaffold_44 . exon 376606 377559 . + . ID=Physo136277.3;Parent=Physo136277;constitutive=1;rank=3 scaffold_44 . CDS 377620 377631 . + 0 ID=Physo136277;Parent=Physo136277;rank=4 scaffold_44 . exon 377620 377631 . + . ID=Physo136277.4;Parent=Physo136277;constitutive=1;rank=4 scaffold_44 ensembl protein_coding_gene 378867 380633 . - . ID=Physo136278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440079;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 378867 380633 . - . ID=Physo136278;Parent=Physo136278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 378867 380633 . - . ID=Physo136278.1;Parent=Physo136278;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_44 . CDS 379086 380633 . - 0 ID=Physo136278;Parent=Physo136278;rank=1 scaffold_44 ensembl protein_coding_gene 381373 382795 . + . ID=Physo136279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440080;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 381373 382795 . + . ID=Physo136279;Parent=Physo136279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 381373 381416 . + 0 ID=Physo136279;Parent=Physo136279;rank=1 scaffold_44 . exon 381373 381416 . + . ID=Physo136279.1;Parent=Physo136279;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . CDS 381493 381602 . + 0 ID=Physo136279;Parent=Physo136279;rank=2 scaffold_44 . exon 381493 381602 . + . ID=Physo136279.2;Parent=Physo136279;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 381629 381846 . + 0 ID=Physo136279;Parent=Physo136279;rank=3 scaffold_44 . exon 381629 381846 . + . ID=Physo136279.3;Parent=Physo136279;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 382044 382291 . + 0 ID=Physo136279;Parent=Physo136279;rank=4 scaffold_44 . exon 382044 382291 . + . ID=Physo136279.4;Parent=Physo136279;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_44 . CDS 382367 382511 . + 0 ID=Physo136279;Parent=Physo136279;rank=5 scaffold_44 . exon 382367 382511 . + . ID=Physo136279.5;Parent=Physo136279;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 382721 382795 . + 0 ID=Physo136279;Parent=Physo136279;rank=6 scaffold_44 . exon 382721 382795 . + . ID=Physo136279.6;Parent=Physo136279;constitutive=1;rank=6 scaffold_44 . biological_region 384215 384216 0.999 + . logic_name=eponine scaffold_44 . repeat_region 385076 393439 . + . description=Polinton-1_PI scaffold_44 . repeat_region 386183 386190 . ? . description=dust scaffold_44 . repeat_region 389908 389915 . ? . description=dust scaffold_44 . repeat_region 392855 392863 . ? . description=dust scaffold_44 . repeat_region 393226 393233 . ? . description=dust scaffold_44 ensembl protein_coding_gene 384222 384430 . - . ID=Physo117538;biotype=protein_coding;external_name=estExt_Genewise1.C_440028;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 384222 384430 . - . ID=Physo117538;Parent=Physo117538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 384222 384428 . - 0 ID=Physo117538;Parent=Physo117538;rank=1 scaffold_44 . exon 384222 384430 . - . ID=Physo117538.1;Parent=Physo117538;constitutive=1;ensembl_phase=-1;rank=1 scaffold_44 . repeat_region 397462 397481 . ? . description=trf scaffold_44 ensembl protein_coding_gene 398412 398792 . + . ID=Physo136280;biotype=protein_coding;description=PsAvh66 [Source:UniProtKB/TrEMBL%3BAcc:E0W570];external_name=estExt_fgenesh1_pg.C_440081;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 398412 398792 . + . ID=Physo136280;Parent=Physo136280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 398412 398792 . + 0 ID=Physo136280;Parent=Physo136280;rank=1 scaffold_44 . exon 398412 398792 . + . ID=Physo136280.1;Parent=Physo136280;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 398969 400266 . - . ID=Physo136281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440082;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 398969 400266 . - . ID=Physo136281;Parent=Physo136281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 398969 399465 . - 0 ID=Physo136281;Parent=Physo136281;rank=4 scaffold_44 . exon 398969 399465 . - . ID=Physo136281.4;Parent=Physo136281;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 . CDS 399542 399680 . - 0 ID=Physo136281;Parent=Physo136281;rank=3 scaffold_44 . exon 399542 399680 . - . ID=Physo136281.3;Parent=Physo136281;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 399751 400041 . - 0 ID=Physo136281;Parent=Physo136281;rank=2 scaffold_44 . exon 399751 400041 . - . ID=Physo136281.2;Parent=Physo136281;constitutive=1;rank=2 scaffold_44 . CDS 400231 400266 . - 0 ID=Physo136281;Parent=Physo136281;rank=1 scaffold_44 . exon 400231 400266 . - . ID=Physo136281.1;Parent=Physo136281;constitutive=1;rank=1 scaffold_44 . biological_region 409459 409464 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 409106 410098 . - . ID=Physo136282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440083;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 409106 410098 . - . ID=Physo136282;Parent=Physo136282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 409106 409599 . - 0 ID=Physo136282;Parent=Physo136282;rank=2 scaffold_44 . exon 409106 409599 . - . ID=Physo136282.2;Parent=Physo136282;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 409906 410098 . - 0 ID=Physo136282;Parent=Physo136282;rank=1 scaffold_44 . exon 409906 410098 . - . ID=Physo136282.1;Parent=Physo136282;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 411845 415449 . - . ID=Physo136283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440084;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 411845 415449 . - . ID=Physo136283;Parent=Physo136283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 411845 412275 . - 0 ID=Physo136283;Parent=Physo136283;rank=9 scaffold_44 . exon 411845 412275 . - . ID=Physo136283.9;Parent=Physo136283;constitutive=1;ensembl_phase=1;rank=9 scaffold_44 . CDS 412347 412520 . - 0 ID=Physo136283;Parent=Physo136283;rank=8 scaffold_44 . exon 412347 412520 . - . ID=Physo136283.8;Parent=Physo136283;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_44 . CDS 412649 413040 . - 0 ID=Physo136283;Parent=Physo136283;rank=7 scaffold_44 . exon 412649 413040 . - . ID=Physo136283.7;Parent=Physo136283;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_44 . CDS 413271 414081 . - 0 ID=Physo136283;Parent=Physo136283;rank=6 scaffold_44 . CDS 414135 414254 . - 0 ID=Physo136283;Parent=Physo136283;rank=5 scaffold_44 . CDS 414453 414587 . - 0 ID=Physo136283;Parent=Physo136283;rank=4 scaffold_44 . CDS 414678 415097 . - 0 ID=Physo136283;Parent=Physo136283;rank=3 scaffold_44 . CDS 415165 415350 . - 0 ID=Physo136283;Parent=Physo136283;rank=2 scaffold_44 . CDS 415440 415449 . - 0 ID=Physo136283;Parent=Physo136283;rank=1 scaffold_44 . repeat_region 419046 419054 . ? . description=dust scaffold_44 . repeat_region 420365 420373 . ? . description=dust scaffold_44 . repeat_region 420383 420410 . ? . description=trf scaffold_44 . exon 413271 414081 . - . ID=Physo136283.6;Parent=Physo136283;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_44 . exon 414135 414254 . - . ID=Physo136283.5;Parent=Physo136283;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_44 . exon 414453 414587 . - . ID=Physo136283.4;Parent=Physo136283;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_44 . exon 414678 415097 . - . ID=Physo136283.3;Parent=Physo136283;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_44 . exon 415165 415350 . - . ID=Physo136283.2;Parent=Physo136283;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_44 . exon 415440 415449 . - . ID=Physo136283.1;Parent=Physo136283;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 417803 418216 . + . ID=Physo136284;biotype=protein_coding;description=PsAvh17 [Source:UniProtKB/TrEMBL%3BAcc:E0W573];external_name=estExt_fgenesh1_pg.C_440085;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 417803 418216 . + . ID=Physo136284;Parent=Physo136284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 417803 418216 . + 0 ID=Physo136284;Parent=Physo136284;rank=1 scaffold_44 . exon 417803 418216 . + . ID=Physo136284.1;Parent=Physo136284;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 419370 429722 . - . ID=Physo136285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440086;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 419370 429722 . - . ID=Physo136285;Parent=Physo136285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 419370 419854 . - 0 ID=Physo136285;Parent=Physo136285;rank=8 scaffold_44 . exon 419370 419854 . - . ID=Physo136285.8;Parent=Physo136285;constitutive=1;ensembl_phase=1;rank=8 scaffold_44 . CDS 419927 420065 . - 0 ID=Physo136285;Parent=Physo136285;rank=7 scaffold_44 . exon 419927 420065 . - . ID=Physo136285.7;Parent=Physo136285;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_44 . CDS 420130 420294 . - 0 ID=Physo136285;Parent=Physo136285;rank=6 scaffold_44 . exon 420130 420294 . - . ID=Physo136285.6;Parent=Physo136285;constitutive=1;rank=6 scaffold_44 . CDS 420548 421067 . - 0 ID=Physo136285;Parent=Physo136285;rank=5 scaffold_44 . exon 420548 421067 . - . ID=Physo136285.5;Parent=Physo136285;constitutive=1;ensembl_phase=2;rank=5 scaffold_44 . CDS 421151 421800 . - 0 ID=Physo136285;Parent=Physo136285;rank=4 scaffold_44 . exon 421151 421800 . - . ID=Physo136285.4;Parent=Physo136285;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_44 . CDS 421855 422034 . - 0 ID=Physo136285;Parent=Physo136285;rank=3 scaffold_44 . exon 421855 422034 . - . ID=Physo136285.3;Parent=Physo136285;constitutive=1;rank=3 scaffold_44 . CDS 422331 422628 . - 0 ID=Physo136285;Parent=Physo136285;rank=2 scaffold_44 . exon 422331 422628 . - . ID=Physo136285.2;Parent=Physo136285;constitutive=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 422710 429722 . - 0 ID=Physo136285;Parent=Physo136285;rank=1 scaffold_44 . exon 422710 429722 . - . ID=Physo136285.1;Parent=Physo136285;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . biological_region 426639 426640 0.999 + . logic_name=eponine scaffold_44 . biological_region 427629 427630 0.999 - . logic_name=eponine scaffold_44 . biological_region 427954 427954 0.999 + . logic_name=eponine scaffold_44 . biological_region 428130 428131 0.999 + . logic_name=eponine scaffold_44 . biological_region 428176 428182 0.999 - . logic_name=eponine scaffold_44 . biological_region 428230 428232 0.999 - . logic_name=eponine scaffold_44 . biological_region 428619 428624 0.999 + . logic_name=eponine scaffold_44 . biological_region 428716 428720 0.999 - . logic_name=eponine scaffold_44 ensembl protein_coding_gene 429897 430271 . - . ID=Physo136286;biotype=protein_coding;description=PsAvh115 [Source:UniProtKB/TrEMBL%3BAcc:E0W574];external_name=estExt_fgenesh1_pg.C_440087;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 429897 430271 . - . ID=Physo136286;Parent=Physo136286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 429897 430271 . - 0 ID=Physo136286;Parent=Physo136286;rank=1 scaffold_44 . exon 429897 430271 . - . ID=Physo136286.1;Parent=Physo136286;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 431378 433306 . - . ID=Physo136287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440088;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 431378 433306 . - . ID=Physo136287;Parent=Physo136287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 431378 433306 . - 0 ID=Physo136287;Parent=Physo136287;rank=1 scaffold_44 . exon 431378 433306 . - . ID=Physo136287.1;Parent=Physo136287;constitutive=1;rank=1 scaffold_44 . repeat_region 441759 441768 . ? . description=dust scaffold_44 . repeat_region 443481 443622 . ? . description=trf scaffold_44 . repeat_region 446879 447098 . ? . description=trf scaffold_44 . biological_region 447435 447440 0.999 + . logic_name=eponine scaffold_44 . biological_region 447480 447485 0.999 + . logic_name=eponine scaffold_44 . biological_region 447500 447503 0.999 + . logic_name=eponine scaffold_44 ensembl tRNA_gene 451348 451420 . + . ID=EPrPSOG00000000247;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_44 ensembl transcript 451348 451420 . + . ID=EPrPSOT00000000247;Parent=EPrPSOG00000000247;biotype=tRNA;logic_name=ncrna_eg scaffold_44 . exon 451348 451420 . + . ID=EPrPSOE00000000247;Parent=EPrPSOT00000000247;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 446133 446498 . - . ID=Physo136288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440089;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 446133 446498 . - . ID=Physo136288;Parent=Physo136288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 446133 446498 . - 0 ID=Physo136288;Parent=Physo136288;rank=1 scaffold_44 . exon 446133 446498 . - . ID=Physo136288.1;Parent=Physo136288;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 446661 447686 . - . ID=Physo136289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440090;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 446661 447686 . - . ID=Physo136289;Parent=Physo136289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 446661 447686 . - 0 ID=Physo136289;Parent=Physo136289;rank=1 scaffold_44 . exon 446661 447686 . - . ID=Physo136289.1;Parent=Physo136289;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 448363 449795 . + . ID=Physo136290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440091;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 448363 449795 . + . ID=Physo136290;Parent=Physo136290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 448363 448897 . + 0 ID=Physo136290;Parent=Physo136290;rank=1 scaffold_44 . exon 448363 448897 . + . ID=Physo136290.1;Parent=Physo136290;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 449020 449795 . + 0 ID=Physo136290;Parent=Physo136290;rank=2 scaffold_44 . exon 449020 449795 . + . ID=Physo136290.2;Parent=Physo136290;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 ensembl protein_coding_gene 450371 450775 . + . ID=Physo136291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440092;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 450371 450775 . + . ID=Physo136291;Parent=Physo136291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 450371 450775 . + 0 ID=Physo136291;Parent=Physo136291;rank=1 scaffold_44 . exon 450371 450775 . + . ID=Physo136291.1;Parent=Physo136291;constitutive=1;rank=1 scaffold_44 . repeat_region 461604 461696 . + . description=(CGA)n scaffold_44 ensembl tRNA_gene 453029 453101 . - . ID=EPrPSOG00000000056;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_44 ensembl transcript 453029 453101 . - . ID=EPrPSOT00000000056;Parent=EPrPSOG00000000056;biotype=tRNA;logic_name=ncrna_eg scaffold_44 . exon 453029 453101 . - . ID=EPrPSOE00000000056;Parent=EPrPSOT00000000056;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 460282 463908 . + . ID=Physo108932;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_440005;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 460282 463908 . + . ID=Physo108932;Parent=Physo108932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 460282 463908 . + 0 ID=Physo108932;Parent=Physo108932;rank=1 scaffold_44 . exon 460282 463908 . + . ID=Physo108932.1;Parent=Physo108932;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 453405 454406 . - . ID=Physo136292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440093;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 453405 454406 . - . ID=Physo136292;Parent=Physo136292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 453405 454406 . - 0 ID=Physo136292;Parent=Physo136292;rank=1 scaffold_44 . exon 453405 454406 . - . ID=Physo136292.1;Parent=Physo136292;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 455742 456875 . - . ID=Physo136293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440094;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 455742 456875 . - . ID=Physo136293;Parent=Physo136293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 455742 456592 . - 0 ID=Physo136293;Parent=Physo136293;rank=2 scaffold_44 . exon 455742 456592 . - . ID=Physo136293.2;Parent=Physo136293;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 456752 456875 . - 0 ID=Physo136293;Parent=Physo136293;rank=1 scaffold_44 . exon 456752 456875 . - . ID=Physo136293.1;Parent=Physo136293;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 457655 459928 . - . ID=Physo136294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440095;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 457655 459928 . - . ID=Physo136294;Parent=Physo136294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 457655 459928 . - 0 ID=Physo136294;Parent=Physo136294;rank=1 scaffold_44 . exon 457655 459928 . - . ID=Physo136294.1;Parent=Physo136294;constitutive=1;rank=1 scaffold_44 . biological_region 466486 466489 0.999 - . logic_name=eponine scaffold_44 . biological_region 466657 466664 0.999 + . logic_name=eponine scaffold_44 . biological_region 466724 466724 0.999 - . logic_name=eponine scaffold_44 . repeat_region 467178 467185 . ? . description=dust scaffold_44 . repeat_region 467222 467229 . ? . description=dust scaffold_44 . repeat_region 469085 469093 . ? . description=dust scaffold_44 . repeat_region 471076 471083 . ? . description=dust scaffold_44 ensembl protein_coding_gene 464852 466748 . - . ID=Physo136296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440097;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 464852 466748 . - . ID=Physo136296;Parent=Physo136296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 464852 465814 . - 0 ID=Physo136296;Parent=Physo136296;rank=3 scaffold_44 . exon 464852 465814 . - . ID=Physo136296.3;Parent=Physo136296;constitutive=1;rank=3 scaffold_44 . CDS 465886 466199 . - 0 ID=Physo136296;Parent=Physo136296;rank=2 scaffold_44 . exon 465886 466199 . - . ID=Physo136296.2;Parent=Physo136296;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 466277 466748 . - 0 ID=Physo136296;Parent=Physo136296;rank=1 scaffold_44 . exon 466277 466748 . - . ID=Physo136296.1;Parent=Physo136296;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 471855 472327 . + . ID=Physo136297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440098;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 471855 472327 . + . ID=Physo136297;Parent=Physo136297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 471855 471858 . + 0 ID=Physo136297;Parent=Physo136297;rank=1 scaffold_44 . exon 471855 471858 . + . ID=Physo136297.1;Parent=Physo136297;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 471981 472327 . + 0 ID=Physo136297;Parent=Physo136297;rank=2 scaffold_44 . exon 471981 472327 . + . ID=Physo136297.2;Parent=Physo136297;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . repeat_region 474353 474372 . ? . description=trf scaffold_44 . repeat_region 477690 477742 . ? . description=trf scaffold_44 . repeat_region 479439 479513 . + . description=(CGA)n scaffold_44 . repeat_region 480888 481133 . + . description=Gypsy-2-I_PI-int scaffold_44 . repeat_region 481327 481481 . + . description=Gypsy-2-I_PI-int scaffold_44 ensembl protein_coding_gene 472483 473046 . - . ID=Physo136298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440099;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 472483 473046 . - . ID=Physo136298;Parent=Physo136298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 472483 473046 . - 0 ID=Physo136298;Parent=Physo136298;rank=1 scaffold_44 . exon 472483 473046 . - . ID=Physo136298.1;Parent=Physo136298;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 478422 483413 . + . ID=Physo136299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440100;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 478422 483413 . + . ID=Physo136299;Parent=Physo136299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 478422 480054 . + 0 ID=Physo136299;Parent=Physo136299;rank=1 scaffold_44 . exon 478422 480054 . + . ID=Physo136299.1;Parent=Physo136299;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 . CDS 480140 481221 . + 0 ID=Physo136299;Parent=Physo136299;rank=2 scaffold_44 . exon 480140 481221 . + . ID=Physo136299.2;Parent=Physo136299;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 481338 483413 . + 0 ID=Physo136299;Parent=Physo136299;rank=3 scaffold_44 . exon 481338 483413 . + . ID=Physo136299.3;Parent=Physo136299;constitutive=1;rank=3 scaffold_44 . repeat_region 484495 484508 . ? . description=dust scaffold_44 . biological_region 487756 487759 0.999 + . logic_name=eponine scaffold_44 . biological_region 488479 488484 0.999 + . logic_name=eponine scaffold_44 . repeat_region 491370 491391 . ? . description=dust scaffold_44 ensembl protein_coding_gene 485423 488635 . - . ID=Physo136300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440101;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 485423 488635 . - . ID=Physo136300;Parent=Physo136300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 485423 488635 . - 0 ID=Physo136300;Parent=Physo136300;rank=1 scaffold_44 . exon 485423 488635 . - . ID=Physo136300.1;Parent=Physo136300;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 488763 489517 . + . ID=Physo136301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440102;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 488763 489517 . + . ID=Physo136301;Parent=Physo136301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . exon 488763 488992 . + . ID=Physo136301.1;Parent=Physo136301;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_44 . CDS 488766 488992 . + 0 ID=Physo136301;Parent=Physo136301;rank=1 scaffold_44 . CDS 489067 489284 . + 0 ID=Physo136301;Parent=Physo136301;rank=2 scaffold_44 . exon 489067 489284 . + . ID=Physo136301.2;Parent=Physo136301;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_44 . CDS 489351 489517 . + 0 ID=Physo136301;Parent=Physo136301;rank=3 scaffold_44 . exon 489351 489517 . + . ID=Physo136301.3;Parent=Physo136301;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 ensembl protein_coding_gene 490486 491024 . - . ID=Physo136302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440103;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 490486 491024 . - . ID=Physo136302;Parent=Physo136302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 490486 490707 . - 0 ID=Physo136302;Parent=Physo136302;rank=2 scaffold_44 . exon 490486 490707 . - . ID=Physo136302.2;Parent=Physo136302;constitutive=1;rank=2 scaffold_44 . CDS 490905 491024 . - 0 ID=Physo136302;Parent=Physo136302;rank=1 scaffold_44 . exon 490905 491024 . - . ID=Physo136302.1;Parent=Physo136302;constitutive=1;rank=1 scaffold_44 . repeat_region 492123 492170 . ? . description=trf scaffold_44 . repeat_region 492209 492282 . ? . description=trf scaffold_44 ensembl protein_coding_gene 493551 497554 . - . ID=Physo136303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440104;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 493551 497554 . - . ID=Physo136303;Parent=Physo136303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 493551 494064 . - 0 ID=Physo136303;Parent=Physo136303;rank=6 scaffold_44 . exon 493551 494064 . - . ID=Physo136303.6;Parent=Physo136303;constitutive=1;ensembl_phase=2;rank=6 scaffold_44 . CDS 494084 494467 . - 0 ID=Physo136303;Parent=Physo136303;rank=5 scaffold_44 . exon 494084 494467 . - . ID=Physo136303.5;Parent=Physo136303;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_44 . CDS 494578 495082 . - 0 ID=Physo136303;Parent=Physo136303;rank=4 scaffold_44 . exon 494578 495082 . - . ID=Physo136303.4;Parent=Physo136303;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_44 . CDS 495110 496340 . - 0 ID=Physo136303;Parent=Physo136303;rank=3 scaffold_44 . exon 495110 496340 . - . ID=Physo136303.3;Parent=Physo136303;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 496439 496954 . - 0 ID=Physo136303;Parent=Physo136303;rank=2 scaffold_44 . exon 496439 496954 . - . ID=Physo136303.2;Parent=Physo136303;constitutive=1;rank=2 scaffold_44 . CDS 497009 497554 . - 0 ID=Physo136303;Parent=Physo136303;rank=1 scaffold_44 . exon 497009 497554 . - . ID=Physo136303.1;Parent=Physo136303;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 498133 499822 . - . ID=Physo136304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440105;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 498133 499822 . - . ID=Physo136304;Parent=Physo136304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 498133 498872 . - 0 ID=Physo136304;Parent=Physo136304;rank=5 scaffold_44 . exon 498133 498872 . - . ID=Physo136304.5;Parent=Physo136304;constitutive=1;ensembl_phase=1;rank=5 scaffold_44 . CDS 499068 499197 . - 0 ID=Physo136304;Parent=Physo136304;rank=4 scaffold_44 . exon 499068 499197 . - . ID=Physo136304.4;Parent=Physo136304;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_44 . CDS 499275 499323 . - 0 ID=Physo136304;Parent=Physo136304;rank=3 scaffold_44 . exon 499275 499323 . - . ID=Physo136304.3;Parent=Physo136304;constitutive=1;ensembl_phase=2;rank=3 scaffold_44 . CDS 499477 499626 . - 0 ID=Physo136304;Parent=Physo136304;rank=2 scaffold_44 . exon 499477 499626 . - . ID=Physo136304.2;Parent=Physo136304;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_44 . CDS 499662 499822 . - 0 ID=Physo136304;Parent=Physo136304;rank=1 scaffold_44 . exon 499662 499822 . - . ID=Physo136304.1;Parent=Physo136304;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_44 . repeat_region 503646 503654 . ? . description=dust scaffold_44 . repeat_region 504129 504137 . ? . description=dust scaffold_44 . biological_region 506745 506756 0.999 - . logic_name=eponine scaffold_44 . repeat_region 507085 507125 . ? . description=dust scaffold_44 ensembl protein_coding_gene 504230 506004 . - . ID=Physo136305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440106;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 504230 506004 . - . ID=Physo136305;Parent=Physo136305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 504230 504285 . - 0 ID=Physo136305;Parent=Physo136305;rank=5 scaffold_44 . exon 504230 504285 . - . ID=Physo136305.5;Parent=Physo136305;constitutive=1;ensembl_phase=1;rank=5 scaffold_44 . CDS 504367 504536 . - 0 ID=Physo136305;Parent=Physo136305;rank=4 scaffold_44 . exon 504367 504536 . - . ID=Physo136305.4;Parent=Physo136305;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_44 . CDS 504771 504865 . - 0 ID=Physo136305;Parent=Physo136305;rank=3 scaffold_44 . exon 504771 504865 . - . ID=Physo136305.3;Parent=Physo136305;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_44 . CDS 505073 505648 . - 0 ID=Physo136305;Parent=Physo136305;rank=2 scaffold_44 . exon 505073 505648 . - . ID=Physo136305.2;Parent=Physo136305;constitutive=1;rank=2 scaffold_44 . CDS 505789 506004 . - 0 ID=Physo136305;Parent=Physo136305;rank=1 scaffold_44 . exon 505789 506004 . - . ID=Physo136305.1;Parent=Physo136305;constitutive=1;rank=1 scaffold_44 ensembl protein_coding_gene 506605 509170 . + . ID=Physo136306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440107;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 506605 509170 . + . ID=Physo136306;Parent=Physo136306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 506605 506856 . + 0 ID=Physo136306;Parent=Physo136306;rank=1 scaffold_44 . exon 506605 506856 . + . ID=Physo136306.1;Parent=Physo136306;constitutive=1;rank=1 scaffold_44 . CDS 506937 507077 . + 0 ID=Physo136306;Parent=Physo136306;rank=2 scaffold_44 . exon 506937 507077 . + . ID=Physo136306.2;Parent=Physo136306;constitutive=1;rank=2 scaffold_44 . CDS 507144 509016 . + 0 ID=Physo136306;Parent=Physo136306;rank=3 scaffold_44 . exon 507144 509016 . + . ID=Physo136306.3;Parent=Physo136306;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_44 . CDS 509157 509170 . + 0 ID=Physo136306;Parent=Physo136306;rank=4 scaffold_44 . exon 509157 509170 . + . ID=Physo136306.4;Parent=Physo136306;constitutive=1;ensembl_phase=1;rank=4 scaffold_44 ensembl protein_coding_gene 509503 512504 . - . ID=Physo136307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440108;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 509503 512504 . - . ID=Physo136307;Parent=Physo136307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 509503 511940 . - 0 ID=Physo136307;Parent=Physo136307;rank=2 scaffold_44 . exon 509503 511940 . - . ID=Physo136307.2;Parent=Physo136307;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 512009 512504 . - 0 ID=Physo136307;Parent=Physo136307;rank=1 scaffold_44 . repeat_region 517016 517062 . ? . description=trf scaffold_44 . repeat_region 517016 517071 . ? . description=trf scaffold_44 . repeat_region 517115 517236 . ? . description=trf scaffold_44 . exon 512009 512504 . - . ID=Physo136307.1;Parent=Physo136307;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 512996 513727 . - . ID=Physo136308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440109;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 512996 513727 . - . ID=Physo136308;Parent=Physo136308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 512996 513456 . - 0 ID=Physo136308;Parent=Physo136308;rank=3 scaffold_44 . exon 512996 513456 . - . ID=Physo136308.3;Parent=Physo136308;constitutive=1;ensembl_phase=1;rank=3 scaffold_44 . CDS 513581 513613 . - 0 ID=Physo136308;Parent=Physo136308;rank=2 scaffold_44 . exon 513581 513613 . - . ID=Physo136308.2;Parent=Physo136308;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 513718 513727 . - 0 ID=Physo136308;Parent=Physo136308;rank=1 scaffold_44 . exon 513718 513727 . - . ID=Physo136308.1;Parent=Physo136308;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_44 ensembl protein_coding_gene 518319 521130 . - . ID=Physo136309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_440110;logic_name=jgi_physo1_1 scaffold_44 ensembl transcript 518319 521130 . - . ID=Physo136309;Parent=Physo136309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_44 . CDS 518319 520798 . - 0 ID=Physo136309;Parent=Physo136309;rank=2 scaffold_44 . exon 518319 520798 . - . ID=Physo136309.2;Parent=Physo136309;constitutive=1;ensembl_phase=1;rank=2 scaffold_44 . CDS 520957 521128 . - 0 ID=Physo136309;Parent=Physo136309;rank=1 scaffold_44 . exon 520957 521130 . - . ID=Physo136309.1;Parent=Physo136309;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_43 1 537293 scaffold_43 . biological_region 3994 3997 0.999 + . logic_name=eponine scaffold_43 . biological_region 4018 4019 0.999 + . logic_name=eponine scaffold_43 . repeat_region 5523 5548 . ? . description=trf scaffold_43 . repeat_region 5539 5608 . ? . description=trf scaffold_43 . repeat_region 5656 5702 . ? . description=trf scaffold_43 . repeat_region 6972 7006 . ? . description=dust scaffold_43 . repeat_region 7418 7425 . ? . description=dust scaffold_43 . repeat_region 9402 9417 . ? . description=dust scaffold_43 ensembl protein_coding_gene 2829 5330 . + . ID=Physo117464;biotype=protein_coding;external_name=estExt_Genewise1.C_430005;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 2829 5330 . + . ID=Physo117464;Parent=Physo117464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 2829 5330 . + . ID=Physo117464.1;Parent=Physo117464;constitutive=1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 2946 5330 . + 0 ID=Physo117464;Parent=Physo117464;rank=1 scaffold_43 ensembl protein_coding_gene 10269 12326 . + . ID=Physo136069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430002;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 10269 12326 . + . ID=Physo136069;Parent=Physo136069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 10269 12326 . + . ID=Physo136069.1;Parent=Physo136069;constitutive=1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 10317 12326 . + 0 ID=Physo136069;Parent=Physo136069;rank=1 scaffold_43 ensembl protein_coding_gene 14572 16428 . + . ID=Physo136070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430003;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 14572 16428 . + . ID=Physo136070;Parent=Physo136070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 14572 16428 . + 0 ID=Physo136070;Parent=Physo136070;rank=1 scaffold_43 . exon 14572 16428 . + . ID=Physo136070.1;Parent=Physo136070;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 16650 20817 . - . ID=Physo136071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430004;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 16650 20817 . - . ID=Physo136071;Parent=Physo136071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 16650 19514 . - 0 ID=Physo136071;Parent=Physo136071;rank=4 scaffold_43 . exon 16650 19514 . - . ID=Physo136071.4;Parent=Physo136071;constitutive=1;rank=4 scaffold_43 . CDS 19693 19928 . - 0 ID=Physo136071;Parent=Physo136071;rank=3 scaffold_43 . exon 19693 19928 . - . ID=Physo136071.3;Parent=Physo136071;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 20009 20281 . - 0 ID=Physo136071;Parent=Physo136071;rank=2 scaffold_43 . CDS 20337 20817 . - 0 ID=Physo136071;Parent=Physo136071;rank=1 scaffold_43 . biological_region 19952 19955 0.999 + . logic_name=eponine scaffold_43 . biological_region 20013 20021 0.999 + . logic_name=eponine scaffold_43 . biological_region 20358 20362 0.999 + . logic_name=eponine scaffold_43 . biological_region 20775 20776 0.999 - . logic_name=eponine scaffold_43 . biological_region 24666 24670 0.999 + . logic_name=eponine scaffold_43 . biological_region 24821 24825 0.999 + . logic_name=eponine scaffold_43 . repeat_region 26147 26201 . ? . description=trf scaffold_43 . repeat_region 26836 26880 . ? . description=trf scaffold_43 . repeat_region 26942 26964 . ? . description=dust scaffold_43 . repeat_region 26942 26964 . ? . description=trf scaffold_43 . biological_region 26961 26964 0.999 + . logic_name=eponine scaffold_43 . repeat_region 29556 29582 . ? . description=trf scaffold_43 . exon 20009 20281 . - . ID=Physo136071.2;Parent=Physo136071;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . exon 20337 20817 . - . ID=Physo136071.1;Parent=Physo136071;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 21306 24768 . - . ID=Physo136072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430005;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 21306 24768 . - . ID=Physo136072;Parent=Physo136072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 21306 23658 . - 0 ID=Physo136072;Parent=Physo136072;rank=6 scaffold_43 . exon 21306 23658 . - . ID=Physo136072.6;Parent=Physo136072;constitutive=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 23724 23792 . - 0 ID=Physo136072;Parent=Physo136072;rank=5 scaffold_43 . exon 23724 23792 . - . ID=Physo136072.5;Parent=Physo136072;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_43 . CDS 23876 24013 . - 0 ID=Physo136072;Parent=Physo136072;rank=4 scaffold_43 . exon 23876 24013 . - . ID=Physo136072.4;Parent=Physo136072;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_43 . CDS 24081 24293 . - 0 ID=Physo136072;Parent=Physo136072;rank=3 scaffold_43 . exon 24081 24293 . - . ID=Physo136072.3;Parent=Physo136072;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_43 . CDS 24364 24429 . - 0 ID=Physo136072;Parent=Physo136072;rank=2 scaffold_43 . exon 24364 24429 . - . ID=Physo136072.2;Parent=Physo136072;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_43 . CDS 24521 24768 . - 0 ID=Physo136072;Parent=Physo136072;rank=1 scaffold_43 . exon 24521 24768 . - . ID=Physo136072.1;Parent=Physo136072;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 32899 33513 . + . ID=Physo136073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430006;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 32899 33513 . + . ID=Physo136073;Parent=Physo136073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 32899 33513 . + 0 ID=Physo136073;Parent=Physo136073;rank=1 scaffold_43 . exon 32899 33513 . + . ID=Physo136073.1;Parent=Physo136073;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 35407 36483 . - . ID=Physo136074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430007;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 35407 36483 . - . ID=Physo136074;Parent=Physo136074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 35407 36483 . - 0 ID=Physo136074;Parent=Physo136074;rank=1 scaffold_43 . exon 35407 36483 . - . ID=Physo136074.1;Parent=Physo136074;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 36716 38479 . - . ID=Physo136075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430008;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 36716 38479 . - . ID=Physo136075;Parent=Physo136075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 36716 38479 . - 0 ID=Physo136075;Parent=Physo136075;rank=1 scaffold_43 . exon 36716 38479 . - . ID=Physo136075.1;Parent=Physo136075;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 39794 42076 . - . ID=Physo136076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430009;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 39794 42076 . - . ID=Physo136076;Parent=Physo136076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 39794 42076 . - 0 ID=Physo136076;Parent=Physo136076;rank=1 scaffold_43 . exon 39794 42076 . - . ID=Physo136076.1;Parent=Physo136076;constitutive=1;rank=1 scaffold_43 . biological_region 41394 41395 0.999 + . logic_name=eponine scaffold_43 . biological_region 41430 41432 0.999 - . logic_name=eponine scaffold_43 . repeat_region 42880 42904 . ? . description=dust scaffold_43 . repeat_region 42880 42904 . ? . description=trf scaffold_43 . biological_region 43027 43030 0.999 - . logic_name=eponine scaffold_43 . biological_region 43084 43087 0.999 + . logic_name=eponine scaffold_43 . biological_region 43729 43733 0.999 + . logic_name=eponine scaffold_43 . biological_region 43772 43777 0.999 + . logic_name=eponine scaffold_43 . biological_region 44068 44070 0.999 + . logic_name=eponine scaffold_43 . biological_region 44130 44131 0.999 + . logic_name=eponine scaffold_43 . biological_region 44226 44228 0.999 - . logic_name=eponine scaffold_43 . repeat_region 44231 44256 . ? . description=trf scaffold_43 . repeat_region 44302 44357 . ? . description=trf scaffold_43 . repeat_region 44364 44427 . ? . description=trf scaffold_43 . repeat_region 44579 44688 . ? . description=trf scaffold_43 . biological_region 44635 44635 0.999 + . logic_name=eponine scaffold_43 . repeat_region 44750 44971 . ? . description=trf scaffold_43 . biological_region 44775 44776 0.999 - . logic_name=eponine scaffold_43 . biological_region 44790 44791 0.999 - . logic_name=eponine scaffold_43 . repeat_region 44968 45072 . ? . description=trf scaffold_43 . repeat_region 45119 45261 . ? . description=trf scaffold_43 . repeat_region 45410 45499 . ? . description=trf scaffold_43 . repeat_region 45617 45745 . ? . description=trf scaffold_43 . repeat_region 45727 45874 . ? . description=trf scaffold_43 . repeat_region 46660 46720 . ? . description=trf scaffold_43 . repeat_region 46668 46704 . ? . description=trf scaffold_43 . repeat_region 47083 47153 . ? . description=trf scaffold_43 . biological_region 47794 47794 0.999 - . logic_name=eponine scaffold_43 . biological_region 47816 47822 0.999 + . logic_name=eponine scaffold_43 . biological_region 48407 48409 0.999 - . logic_name=eponine scaffold_43 . repeat_region 48856 48863 . ? . description=dust scaffold_43 ensembl protein_coding_gene 43967 47040 . + . ID=Physo136077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430010;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 43967 47040 . + . ID=Physo136077;Parent=Physo136077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 43967 46840 . + 0 ID=Physo136077;Parent=Physo136077;rank=1 scaffold_43 . exon 43967 47040 . + . ID=Physo136077.1;Parent=Physo136077;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_43 ensembl protein_coding_gene 47154 48853 . + . ID=Physo136078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430011;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 47154 48853 . + . ID=Physo136078;Parent=Physo136078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 47154 47741 . + . ID=Physo136078.1;Parent=Physo136078;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_43 . CDS 47164 47741 . + 0 ID=Physo136078;Parent=Physo136078;rank=1 scaffold_43 . CDS 47859 48678 . + 0 ID=Physo136078;Parent=Physo136078;rank=2 scaffold_43 . exon 47859 48678 . + . ID=Physo136078.2;Parent=Physo136078;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 48809 48853 . + 0 ID=Physo136078;Parent=Physo136078;rank=3 scaffold_43 . exon 48809 48853 . + . ID=Physo136078.3;Parent=Physo136078;constitutive=1;rank=3 scaffold_43 ensembl protein_coding_gene 50206 58496 . + . ID=Physo136079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430012;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 50206 58496 . + . ID=Physo136079;Parent=Physo136079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 50206 51579 . + 0 ID=Physo136079;Parent=Physo136079;rank=1 scaffold_43 . exon 50206 51579 . + . ID=Physo136079.1;Parent=Physo136079;constitutive=1;rank=1 scaffold_43 . CDS 51904 53362 . + 0 ID=Physo136079;Parent=Physo136079;rank=2 scaffold_43 . exon 51904 53362 . + . ID=Physo136079.2;Parent=Physo136079;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 53449 54656 . + 0 ID=Physo136079;Parent=Physo136079;rank=3 scaffold_43 . exon 53449 54656 . + . ID=Physo136079.3;Parent=Physo136079;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 54734 55595 . + 0 ID=Physo136079;Parent=Physo136079;rank=4 scaffold_43 . exon 54734 55595 . + . ID=Physo136079.4;Parent=Physo136079;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_43 . CDS 55823 56195 . + 0 ID=Physo136079;Parent=Physo136079;rank=5 scaffold_43 . exon 55823 56195 . + . ID=Physo136079.5;Parent=Physo136079;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_43 . CDS 56417 57065 . + 0 ID=Physo136079;Parent=Physo136079;rank=6 scaffold_43 . exon 56417 57065 . + . ID=Physo136079.6;Parent=Physo136079;constitutive=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 57143 58235 . + 0 ID=Physo136079;Parent=Physo136079;rank=7 scaffold_43 . exon 57143 58235 . + . ID=Physo136079.7;Parent=Physo136079;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_43 . CDS 58255 58496 . + 0 ID=Physo136079;Parent=Physo136079;rank=8 scaffold_43 . exon 58255 58496 . + . ID=Physo136079.8;Parent=Physo136079;constitutive=1;ensembl_phase=1;rank=8 scaffold_43 ensembl protein_coding_gene 58688 60307 . - . ID=Physo136080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430013;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 58688 60307 . - . ID=Physo136080;Parent=Physo136080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 58688 59887 . - 0 ID=Physo136080;Parent=Physo136080;rank=2 scaffold_43 . exon 58688 59887 . - . ID=Physo136080.2;Parent=Physo136080;constitutive=1;rank=2 scaffold_43 . CDS 59993 60307 . - 0 ID=Physo136080;Parent=Physo136080;rank=1 scaffold_43 . biological_region 59842 59846 0.999 - . logic_name=eponine scaffold_43 . biological_region 59844 59847 0.999 + . logic_name=eponine scaffold_43 . biological_region 59861 59867 0.999 - . logic_name=eponine scaffold_43 . biological_region 59919 59919 0.999 + . logic_name=eponine scaffold_43 . repeat_region 62777 68496 . - . description=Sola3-1_PS scaffold_43 . repeat_region 63165 63217 . ? . description=dust scaffold_43 . repeat_region 63173 63216 . ? . description=trf scaffold_43 . repeat_region 64298 64306 . ? . description=dust scaffold_43 . exon 59993 60307 . - . ID=Physo136080.1;Parent=Physo136080;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 60911 61768 . + . ID=Physo136081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430014;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 60911 61768 . + . ID=Physo136081;Parent=Physo136081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 60911 61768 . + 0 ID=Physo136081;Parent=Physo136081;rank=1 scaffold_43 . exon 60911 61768 . + . ID=Physo136081.1;Parent=Physo136081;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 68770 71097 . + . ID=Physo136082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430015;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 68770 71097 . + . ID=Physo136082;Parent=Physo136082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 68770 71097 . + 0 ID=Physo136082;Parent=Physo136082;rank=1 scaffold_43 . exon 68770 71097 . + . ID=Physo136082.1;Parent=Physo136082;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 71230 73554 . - . ID=Physo136083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430016;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 71230 73554 . - . ID=Physo136083;Parent=Physo136083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 71230 73554 . - 0 ID=Physo136083;Parent=Physo136083;rank=1 scaffold_43 . exon 71230 73554 . - . ID=Physo136083.1;Parent=Physo136083;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 74914 76932 . + . ID=Physo136084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430017;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 74914 76932 . + . ID=Physo136084;Parent=Physo136084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 74914 76932 . + 0 ID=Physo136084;Parent=Physo136084;rank=1 scaffold_43 . exon 74914 76932 . + . ID=Physo136084.1;Parent=Physo136084;constitutive=1;rank=1 scaffold_43 . repeat_region 81608 81772 . + . description=Polinton-1_PI scaffold_43 . repeat_region 81979 82125 . + . description=Polinton-1_PI scaffold_43 . biological_region 82108 82108 0.999 + . logic_name=eponine scaffold_43 . repeat_region 82314 82470 . + . description=Polinton-1_PI scaffold_43 . repeat_region 83207 83256 . ? . description=trf scaffold_43 . biological_region 87822 87823 0.999 - . logic_name=eponine scaffold_43 . biological_region 89209 89211 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 88456 89592 . + . ID=Physo108921;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_430001;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 88456 89592 . + . ID=Physo108921;Parent=Physo108921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 88456 88577 . + 0 ID=Physo108921;Parent=Physo108921;rank=1 scaffold_43 . exon 88456 88577 . + . ID=Physo108921.1;Parent=Physo108921;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 88657 89284 . + 0 ID=Physo108921;Parent=Physo108921;rank=2 scaffold_43 . exon 88657 89284 . + . ID=Physo108921.2;Parent=Physo108921;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 89359 89592 . + 0 ID=Physo108921;Parent=Physo108921;rank=3 scaffold_43 . exon 89359 89592 . + . ID=Physo108921.3;Parent=Physo108921;constitutive=1;rank=3 scaffold_43 ensembl protein_coding_gene 79645 81143 . - . ID=Physo136085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430018;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 79645 81143 . - . ID=Physo136085;Parent=Physo136085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 79645 80925 . - 0 ID=Physo136085;Parent=Physo136085;rank=2 scaffold_43 . exon 79645 80925 . - . ID=Physo136085.2;Parent=Physo136085;constitutive=1;rank=2 scaffold_43 . CDS 80946 81143 . - 0 ID=Physo136085;Parent=Physo136085;rank=1 scaffold_43 . exon 80946 81143 . - . ID=Physo136085.1;Parent=Physo136085;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 81601 84458 . + . ID=Physo136086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430019;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 81601 84458 . + . ID=Physo136086;Parent=Physo136086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 81601 83255 . + 0 ID=Physo136086;Parent=Physo136086;rank=1 scaffold_43 . exon 81601 83255 . + . ID=Physo136086.1;Parent=Physo136086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 83320 83395 . + 0 ID=Physo136086;Parent=Physo136086;rank=2 scaffold_43 . exon 83320 83395 . + . ID=Physo136086.2;Parent=Physo136086;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 83505 84458 . + 0 ID=Physo136086;Parent=Physo136086;rank=3 scaffold_43 . exon 83505 84458 . + . ID=Physo136086.3;Parent=Physo136086;constitutive=1;rank=3 scaffold_43 . repeat_region 89738 89745 . ? . description=dust scaffold_43 . repeat_region 93110 93166 . ? . description=dust scaffold_43 ensembl protein_coding_gene 90588 93557 . - . ID=Physo136088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430021;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 90588 93557 . - . ID=Physo136088;Parent=Physo136088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 90588 93557 . - 0 ID=Physo136088;Parent=Physo136088;rank=1 scaffold_43 . exon 90588 93557 . - . ID=Physo136088.1;Parent=Physo136088;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 94096 95640 . + . ID=Physo136089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430022;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 94096 95640 . + . ID=Physo136089;Parent=Physo136089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 94096 95640 . + 0 ID=Physo136089;Parent=Physo136089;rank=1 scaffold_43 . exon 94096 95640 . + . ID=Physo136089.1;Parent=Physo136089;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 96773 98500 . + . ID=Physo136090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430023;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 96773 98500 . + . ID=Physo136090;Parent=Physo136090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 96773 98500 . + 0 ID=Physo136090;Parent=Physo136090;rank=1 scaffold_43 . exon 96773 98500 . + . ID=Physo136090.1;Parent=Physo136090;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 99121 99694 . - . ID=Physo136091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430024;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 99121 99694 . - . ID=Physo136091;Parent=Physo136091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 99121 99261 . - 0 ID=Physo136091;Parent=Physo136091;rank=4 scaffold_43 . exon 99121 99261 . - . ID=Physo136091.4;Parent=Physo136091;constitutive=1;rank=4 scaffold_43 . CDS 99351 99458 . - 0 ID=Physo136091;Parent=Physo136091;rank=3 scaffold_43 . exon 99351 99458 . - . ID=Physo136091.3;Parent=Physo136091;constitutive=1;rank=3 scaffold_43 . CDS 99531 99638 . - 0 ID=Physo136091;Parent=Physo136091;rank=2 scaffold_43 . CDS 99674 99694 . - 0 ID=Physo136091;Parent=Physo136091;rank=1 scaffold_43 . biological_region 99804 99809 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 100382 100938 . - . ID=Physo117486;biotype=protein_coding;external_name=estExt_Genewise1.C_430027;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 100382 100938 . - . ID=Physo117486;Parent=Physo117486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 100382 100684 . - 0 ID=Physo117486;Parent=Physo117486;rank=1 scaffold_43 . exon 100382 100938 . - . ID=Physo117486.1;Parent=Physo117486;constitutive=1;ensembl_phase=-1;rank=1 scaffold_43 ensembl protein_coding_gene 101468 105650 . + . ID=Physo117491;biotype=protein_coding;external_name=estExt_Genewise1.C_430032;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 101468 105650 . + . ID=Physo117491;Parent=Physo117491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 101468 102351 . + . ID=Physo117491.1;Parent=Physo117491;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_43 . CDS 101486 102351 . + 0 ID=Physo117491;Parent=Physo117491;rank=1 scaffold_43 . CDS 102501 102825 . + 0 ID=Physo117491;Parent=Physo117491;rank=2 scaffold_43 . exon 102501 102825 . + . ID=Physo117491.2;Parent=Physo117491;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 105330 105545 . + 0 ID=Physo117491;Parent=Physo117491;rank=3 scaffold_43 . exon 105330 105650 . + . ID=Physo117491.3;Parent=Physo117491;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_43 . exon 99531 99638 . - . ID=Physo136091.2;Parent=Physo136091;constitutive=1;rank=2 scaffold_43 . exon 99674 99694 . - . ID=Physo136091.1;Parent=Physo136091;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 109387 110386 . - . ID=Physo136093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430026;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 109387 110386 . - . ID=Physo136093;Parent=Physo136093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 109387 109790 . - 0 ID=Physo136093;Parent=Physo136093;rank=3 scaffold_43 . exon 109387 109790 . - . ID=Physo136093.3;Parent=Physo136093;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 109940 110144 . - 0 ID=Physo136093;Parent=Physo136093;rank=2 scaffold_43 . CDS 110258 110386 . - 0 ID=Physo136093;Parent=Physo136093;rank=1 scaffold_43 . repeat_region 112294 112303 . ? . description=dust scaffold_43 . repeat_region 116729 116843 . ? . description=trf scaffold_43 . repeat_region 116752 116849 . ? . description=trf scaffold_43 . repeat_region 117196 117230 . ? . description=trf scaffold_43 . repeat_region 117233 117271 . ? . description=trf scaffold_43 . repeat_region 117689 117852 . ? . description=trf scaffold_43 . repeat_region 117699 117745 . ? . description=trf scaffold_43 . repeat_region 117702 117754 . ? . description=trf scaffold_43 . repeat_region 117970 118019 . ? . description=dust scaffold_43 . repeat_region 118221 118255 . ? . description=trf scaffold_43 . repeat_region 118258 118292 . ? . description=trf scaffold_43 . repeat_region 118639 118738 . ? . description=trf scaffold_43 . repeat_region 118643 118759 . ? . description=trf scaffold_43 . exon 109940 110144 . - . ID=Physo136093.2;Parent=Physo136093;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . exon 110258 110386 . - . ID=Physo136093.1;Parent=Physo136093;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 116190 116860 . - . ID=Physo136094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430027;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 116190 116860 . - . ID=Physo136094;Parent=Physo136094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 116190 116368 . - 0 ID=Physo136094;Parent=Physo136094;rank=2 scaffold_43 . exon 116190 116368 . - . ID=Physo136094.2;Parent=Physo136094;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 116572 116860 . - 0 ID=Physo136094;Parent=Physo136094;rank=1 scaffold_43 . exon 116572 116860 . - . ID=Physo136094.1;Parent=Physo136094;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 118628 119298 . + . ID=Physo136095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430028;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 118628 119298 . + . ID=Physo136095;Parent=Physo136095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 118628 118916 . + 0 ID=Physo136095;Parent=Physo136095;rank=1 scaffold_43 . exon 118628 118916 . + . ID=Physo136095.1;Parent=Physo136095;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 119120 119298 . + 0 ID=Physo136095;Parent=Physo136095;rank=2 scaffold_43 . exon 119120 119298 . + . ID=Physo136095.2;Parent=Physo136095;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . biological_region 120964 120970 0.999 + . logic_name=eponine scaffold_43 . biological_region 121016 121017 0.999 + . logic_name=eponine scaffold_43 . biological_region 124112 124116 0.999 + . logic_name=eponine scaffold_43 . biological_region 124134 124139 0.999 + . logic_name=eponine scaffold_43 . biological_region 124468 124469 0.999 - . logic_name=eponine scaffold_43 . biological_region 124650 124654 0.999 - . logic_name=eponine scaffold_43 . biological_region 125988 125992 0.999 - . logic_name=eponine scaffold_43 . biological_region 126943 126953 0.999 + . logic_name=eponine scaffold_43 . repeat_region 130117 130161 . ? . description=trf scaffold_43 . repeat_region 130273 130280 . ? . description=dust scaffold_43 . repeat_region 130799 130850 . ? . description=trf scaffold_43 . repeat_region 133405 133426 . ? . description=trf scaffold_43 ensembl protein_coding_gene 130931 131942 . - . ID=Physo136096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430029;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 130931 131942 . - . ID=Physo136096;Parent=Physo136096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 130931 131207 . - 0 ID=Physo136096;Parent=Physo136096;rank=6 scaffold_43 . exon 130931 131207 . - . ID=Physo136096.6;Parent=Physo136096;constitutive=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 131250 131312 . - 0 ID=Physo136096;Parent=Physo136096;rank=5 scaffold_43 . exon 131250 131312 . - . ID=Physo136096.5;Parent=Physo136096;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_43 . CDS 131335 131397 . - 0 ID=Physo136096;Parent=Physo136096;rank=4 scaffold_43 . exon 131335 131397 . - . ID=Physo136096.4;Parent=Physo136096;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_43 . CDS 131430 131566 . - 0 ID=Physo136096;Parent=Physo136096;rank=3 scaffold_43 . exon 131430 131566 . - . ID=Physo136096.3;Parent=Physo136096;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . CDS 131686 131748 . - 0 ID=Physo136096;Parent=Physo136096;rank=2 scaffold_43 . exon 131686 131748 . - . ID=Physo136096.2;Parent=Physo136096;constitutive=1;rank=2 scaffold_43 . CDS 131841 131942 . - 0 ID=Physo136096;Parent=Physo136096;rank=1 scaffold_43 . exon 131841 131942 . - . ID=Physo136096.1;Parent=Physo136096;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 132729 135140 . + . ID=Physo136097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430030;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 132729 135140 . + . ID=Physo136097;Parent=Physo136097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 132729 132887 . + 0 ID=Physo136097;Parent=Physo136097;rank=1 scaffold_43 . exon 132729 132887 . + . ID=Physo136097.1;Parent=Physo136097;constitutive=1;rank=1 scaffold_43 . CDS 132997 133101 . + 0 ID=Physo136097;Parent=Physo136097;rank=2 scaffold_43 . exon 132997 133101 . + . ID=Physo136097.2;Parent=Physo136097;constitutive=1;rank=2 scaffold_43 . CDS 133212 133322 . + 0 ID=Physo136097;Parent=Physo136097;rank=3 scaffold_43 . exon 133212 133322 . + . ID=Physo136097.3;Parent=Physo136097;constitutive=1;rank=3 scaffold_43 . CDS 133432 133545 . + 0 ID=Physo136097;Parent=Physo136097;rank=4 scaffold_43 . exon 133432 133545 . + . ID=Physo136097.4;Parent=Physo136097;constitutive=1;rank=4 scaffold_43 . CDS 133649 133846 . + 0 ID=Physo136097;Parent=Physo136097;rank=5 scaffold_43 . exon 133649 133846 . + . ID=Physo136097.5;Parent=Physo136097;constitutive=1;rank=5 scaffold_43 . CDS 133938 134039 . + 0 ID=Physo136097;Parent=Physo136097;rank=6 scaffold_43 . exon 133938 134039 . + . ID=Physo136097.6;Parent=Physo136097;constitutive=1;rank=6 scaffold_43 . CDS 134133 134441 . + 0 ID=Physo136097;Parent=Physo136097;rank=7 scaffold_43 . exon 134133 134441 . + . ID=Physo136097.7;Parent=Physo136097;constitutive=1;rank=7 scaffold_43 . CDS 134543 134599 . + 0 ID=Physo136097;Parent=Physo136097;rank=8 scaffold_43 . exon 134543 134599 . + . ID=Physo136097.8;Parent=Physo136097;constitutive=1;rank=8 scaffold_43 . CDS 134676 134774 . + 0 ID=Physo136097;Parent=Physo136097;rank=9 scaffold_43 . exon 134676 134774 . + . ID=Physo136097.9;Parent=Physo136097;constitutive=1;rank=9 scaffold_43 . CDS 134868 134975 . + 0 ID=Physo136097;Parent=Physo136097;rank=10 scaffold_43 . exon 134868 134975 . + . ID=Physo136097.10;Parent=Physo136097;constitutive=1;rank=10 scaffold_43 . CDS 135054 135140 . + 0 ID=Physo136097;Parent=Physo136097;rank=11 scaffold_43 . exon 135054 135140 . + . ID=Physo136097.11;Parent=Physo136097;constitutive=1;rank=11 scaffold_43 ensembl protein_coding_gene 135629 136501 . - . ID=Physo136098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430031;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 135629 136501 . - . ID=Physo136098;Parent=Physo136098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 135629 136501 . - 0 ID=Physo136098;Parent=Physo136098;rank=1 scaffold_43 . exon 135629 136501 . - . ID=Physo136098.1;Parent=Physo136098;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 137272 138123 . + . ID=Physo136099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430032;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 137272 138123 . + . ID=Physo136099;Parent=Physo136099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 137272 138123 . + 0 ID=Physo136099;Parent=Physo136099;rank=1 scaffold_43 . exon 137272 138123 . + . ID=Physo136099.1;Parent=Physo136099;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 138712 139474 . + . ID=Physo136100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430033;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 138712 139474 . + . ID=Physo136100;Parent=Physo136100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 138712 139373 . + 0 ID=Physo136100;Parent=Physo136100;rank=1 scaffold_43 . exon 138712 139373 . + . ID=Physo136100.1;Parent=Physo136100;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 139450 139474 . + 0 ID=Physo136100;Parent=Physo136100;rank=2 scaffold_43 . biological_region 140884 140890 0.999 + . logic_name=eponine scaffold_43 . biological_region 140923 140927 0.999 - . logic_name=eponine scaffold_43 . biological_region 140952 140954 0.999 - . logic_name=eponine scaffold_43 . biological_region 140976 140982 0.999 + . logic_name=eponine scaffold_43 . biological_region 142281 142282 0.999 + . logic_name=eponine scaffold_43 . biological_region 142332 142335 0.999 + . logic_name=eponine scaffold_43 . biological_region 142345 142346 0.999 - . logic_name=eponine scaffold_43 . biological_region 142419 142420 0.999 + . logic_name=eponine scaffold_43 . biological_region 142447 142449 0.999 - . logic_name=eponine scaffold_43 . biological_region 142843 142844 0.999 + . logic_name=eponine scaffold_43 . biological_region 143392 143393 0.999 + . logic_name=eponine scaffold_43 . biological_region 144585 144589 0.999 - . logic_name=eponine scaffold_43 . biological_region 144843 144843 0.999 + . logic_name=eponine scaffold_43 . biological_region 146314 146317 0.999 - . logic_name=eponine scaffold_43 . biological_region 146412 146412 0.999 - . logic_name=eponine scaffold_43 . biological_region 146465 146469 0.999 + . logic_name=eponine scaffold_43 . biological_region 146800 146805 0.999 + . logic_name=eponine scaffold_43 . biological_region 146851 146854 0.999 - . logic_name=eponine scaffold_43 . biological_region 146858 146858 0.999 + . logic_name=eponine scaffold_43 . biological_region 146889 146896 0.999 - . logic_name=eponine scaffold_43 . biological_region 147290 147291 0.999 + . logic_name=eponine scaffold_43 . biological_region 148050 148056 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 147716 148207 . - . ID=Physo108922;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_430002;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 147716 148207 . - . ID=Physo108922;Parent=Physo108922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 147716 148207 . - 0 ID=Physo108922;Parent=Physo108922;rank=1 scaffold_43 . exon 147716 148207 . - . ID=Physo108922.1;Parent=Physo108922;constitutive=1;rank=1 scaffold_43 . exon 139450 139474 . + . ID=Physo136100.2;Parent=Physo136100;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 ensembl protein_coding_gene 139884 141077 . - . ID=Physo136101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430034;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 139884 141077 . - . ID=Physo136101;Parent=Physo136101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 139884 141077 . - . ID=Physo136101.1;Parent=Physo136101;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 140302 140982 . - 0 ID=Physo136101;Parent=Physo136101;rank=1 scaffold_43 ensembl protein_coding_gene 142137 142936 . + . ID=Physo136102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430035;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 142137 142936 . + . ID=Physo136102;Parent=Physo136102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 142137 142703 . + 0 ID=Physo136102;Parent=Physo136102;rank=1 scaffold_43 . exon 142137 142703 . + . ID=Physo136102.1;Parent=Physo136102;constitutive=1;rank=1 scaffold_43 . CDS 142793 142936 . + 0 ID=Physo136102;Parent=Physo136102;rank=2 scaffold_43 . exon 142793 142936 . + . ID=Physo136102.2;Parent=Physo136102;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 143268 145319 . + . ID=Physo136103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430036;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 143268 145319 . + . ID=Physo136103;Parent=Physo136103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 143268 145319 . + . ID=Physo136103.1;Parent=Physo136103;constitutive=1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 143301 145319 . + 0 ID=Physo136103;Parent=Physo136103;rank=1 scaffold_43 ensembl protein_coding_gene 146099 146575 . - . ID=Physo136104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430037;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 146099 146575 . - . ID=Physo136104;Parent=Physo136104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 146099 146575 . - 0 ID=Physo136104;Parent=Physo136104;rank=1 scaffold_43 . exon 146099 146575 . - . ID=Physo136104.1;Parent=Physo136104;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 146723 147587 . + . ID=Physo136105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430038;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 146723 147587 . + . ID=Physo136105;Parent=Physo136105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 146723 146946 . + . ID=Physo136105.1;Parent=Physo136105;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 146778 146946 . + 0 ID=Physo136105;Parent=Physo136105;rank=1 scaffold_43 . CDS 147030 147149 . + 0 ID=Physo136105;Parent=Physo136105;rank=2 scaffold_43 . exon 147030 147149 . + . ID=Physo136105.2;Parent=Physo136105;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 147247 147395 . + 0 ID=Physo136105;Parent=Physo136105;rank=3 scaffold_43 . exon 147247 147587 . + . ID=Physo136105.3;Parent=Physo136105;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_43 . repeat_region 154267 154286 . ? . description=trf scaffold_43 . repeat_region 156643 156788 . ? . description=trf scaffold_43 . repeat_region 156688 156788 . ? . description=trf scaffold_43 . repeat_region 158961 158980 . ? . description=trf scaffold_43 ensembl protein_coding_gene 152896 155054 . + . ID=Physo136107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430040;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 152896 155054 . + . ID=Physo136107;Parent=Physo136107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 152896 153333 . + . ID=Physo136107.1;Parent=Physo136107;constitutive=1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 153190 153333 . + 0 ID=Physo136107;Parent=Physo136107;rank=1 scaffold_43 . CDS 153404 154888 . + 0 ID=Physo136107;Parent=Physo136107;rank=2 scaffold_43 . exon 153404 155054 . + . ID=Physo136107.2;Parent=Physo136107;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_43 ensembl protein_coding_gene 155180 156905 . - . ID=Physo136108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430041;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 155180 156905 . - . ID=Physo136108;Parent=Physo136108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 155180 156320 . - 0 ID=Physo136108;Parent=Physo136108;rank=3 scaffold_43 . exon 155180 156320 . - . ID=Physo136108.3;Parent=Physo136108;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 156403 156787 . - 0 ID=Physo136108;Parent=Physo136108;rank=2 scaffold_43 . exon 156403 156787 . - . ID=Physo136108.2;Parent=Physo136108;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 156857 156905 . - 0 ID=Physo136108;Parent=Physo136108;rank=1 scaffold_43 . exon 156857 156905 . - . ID=Physo136108.1;Parent=Physo136108;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . repeat_region 160561 160591 . ? . description=dust scaffold_43 . repeat_region 161823 161830 . ? . description=dust scaffold_43 . biological_region 162467 162472 0.999 + . logic_name=eponine scaffold_43 . biological_region 162569 162574 0.999 - . logic_name=eponine scaffold_43 . biological_region 163583 163584 0.999 + . logic_name=eponine scaffold_43 . biological_region 163620 163622 0.999 + . logic_name=eponine scaffold_43 . biological_region 167687 167692 0.999 - . logic_name=eponine scaffold_43 . biological_region 167902 167907 0.999 + . logic_name=eponine scaffold_43 . biological_region 167973 167977 0.999 + . logic_name=eponine scaffold_43 . biological_region 168008 168010 0.999 - . logic_name=eponine scaffold_43 . repeat_region 168067 168074 . ? . description=dust scaffold_43 . biological_region 169024 169026 0.999 - . logic_name=eponine scaffold_43 . biological_region 169078 169083 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 162506 163168 . + . ID=Physo136109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430042;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 162506 163168 . + . ID=Physo136109;Parent=Physo136109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 162506 163168 . + 0 ID=Physo136109;Parent=Physo136109;rank=1 scaffold_43 . exon 162506 163168 . + . ID=Physo136109.1;Parent=Physo136109;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 164015 166322 . - . ID=Physo136110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430043;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 164015 166322 . - . ID=Physo136110;Parent=Physo136110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 164015 164398 . - 0 ID=Physo136110;Parent=Physo136110;rank=3 scaffold_43 . exon 164015 164398 . - . ID=Physo136110.3;Parent=Physo136110;constitutive=1;rank=3 scaffold_43 . CDS 164469 164785 . - 0 ID=Physo136110;Parent=Physo136110;rank=2 scaffold_43 . exon 164469 164785 . - . ID=Physo136110.2;Parent=Physo136110;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 164840 166322 . - 0 ID=Physo136110;Parent=Physo136110;rank=1 scaffold_43 . exon 164840 166322 . - . ID=Physo136110.1;Parent=Physo136110;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 168731 171592 . - . ID=Physo136111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430044;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 168731 171592 . - . ID=Physo136111;Parent=Physo136111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 168731 171592 . - 0 ID=Physo136111;Parent=Physo136111;rank=1 scaffold_43 . exon 168731 171592 . - . ID=Physo136111.1;Parent=Physo136111;constitutive=1;rank=1 scaffold_43 . repeat_region 171156 171183 . ? . description=trf scaffold_43 . repeat_region 171156 171189 . ? . description=trf scaffold_43 . repeat_region 175249 175298 . ? . description=trf scaffold_43 . repeat_region 175261 175304 . ? . description=trf scaffold_43 . repeat_region 175264 175312 . ? . description=trf scaffold_43 . repeat_region 176060 176085 . ? . description=trf scaffold_43 ensembl protein_coding_gene 172483 173345 . + . ID=Physo136112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430045;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 172483 173345 . + . ID=Physo136112;Parent=Physo136112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 172483 173160 . + 0 ID=Physo136112;Parent=Physo136112;rank=1 scaffold_43 . exon 172483 173160 . + . ID=Physo136112.1;Parent=Physo136112;constitutive=1;rank=1 scaffold_43 . CDS 173295 173345 . + 0 ID=Physo136112;Parent=Physo136112;rank=2 scaffold_43 . exon 173295 173345 . + . ID=Physo136112.2;Parent=Physo136112;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 173680 176115 . - . ID=Physo136113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430046;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 173680 176115 . - . ID=Physo136113;Parent=Physo136113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 173680 176115 . - 0 ID=Physo136113;Parent=Physo136113;rank=1 scaffold_43 . exon 173680 176115 . - . ID=Physo136113.1;Parent=Physo136113;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 178920 181196 . + . ID=Physo136114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430047;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 178920 181196 . + . ID=Physo136114;Parent=Physo136114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 178920 180216 . + 0 ID=Physo136114;Parent=Physo136114;rank=1 scaffold_43 . exon 178920 180216 . + . ID=Physo136114.1;Parent=Physo136114;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 180433 180704 . + 0 ID=Physo136114;Parent=Physo136114;rank=2 scaffold_43 . CDS 180822 181196 . + 0 ID=Physo136114;Parent=Physo136114;rank=3 scaffold_43 . biological_region 188571 188574 0.999 + . logic_name=eponine scaffold_43 . biological_region 188627 188629 0.999 + . logic_name=eponine scaffold_43 . repeat_region 188794 188830 . ? . description=dust scaffold_43 . exon 180433 180704 . + . ID=Physo136114.2;Parent=Physo136114;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . exon 180822 181196 . + . ID=Physo136114.3;Parent=Physo136114;constitutive=1;rank=3 scaffold_43 ensembl protein_coding_gene 184231 185327 . + . ID=Physo136115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430048;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 184231 185327 . + . ID=Physo136115;Parent=Physo136115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 184231 184660 . + 0 ID=Physo136115;Parent=Physo136115;rank=1 scaffold_43 . exon 184231 184660 . + . ID=Physo136115.1;Parent=Physo136115;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 184707 185259 . + 0 ID=Physo136115;Parent=Physo136115;rank=2 scaffold_43 . exon 184707 185259 . + . ID=Physo136115.2;Parent=Physo136115;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 185318 185327 . + 0 ID=Physo136115;Parent=Physo136115;rank=3 scaffold_43 . exon 185318 185327 . + . ID=Physo136115.3;Parent=Physo136115;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 ensembl protein_coding_gene 185852 189523 . - . ID=Physo136116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430049;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 185852 189523 . - . ID=Physo136116;Parent=Physo136116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 185852 188007 . - 0 ID=Physo136116;Parent=Physo136116;rank=3 scaffold_43 . exon 185852 188007 . - . ID=Physo136116.3;Parent=Physo136116;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 188083 188951 . - 0 ID=Physo136116;Parent=Physo136116;rank=2 scaffold_43 . exon 188083 188951 . - . ID=Physo136116.2;Parent=Physo136116;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 189030 189523 . - 0 ID=Physo136116;Parent=Physo136116;rank=1 scaffold_43 . exon 189030 189523 . - . ID=Physo136116.1;Parent=Physo136116;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 194651 198702 . + . ID=Physo157362;biotype=protein_coding;external_name=C_scaffold_43000007;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 194651 198702 . + . ID=Physo157362;Parent=Physo157362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 194651 195208 . + 0 ID=Physo157362;Parent=Physo157362;rank=1 scaffold_43 . exon 194651 195208 . + . ID=Physo157362.1;Parent=Physo157362;constitutive=1;rank=1 scaffold_43 . CDS 195236 195399 . + 0 ID=Physo157362;Parent=Physo157362;rank=2 scaffold_43 . exon 195236 195399 . + . ID=Physo157362.2;Parent=Physo157362;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_43 . CDS 195430 195902 . + 0 ID=Physo157362;Parent=Physo157362;rank=3 scaffold_43 . exon 195430 195902 . + . ID=Physo157362.3;Parent=Physo157362;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 195948 196403 . + 0 ID=Physo157362;Parent=Physo157362;rank=4 scaffold_43 . exon 195948 196403 . + . ID=Physo157362.4;Parent=Physo157362;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 196434 196646 . + 0 ID=Physo157362;Parent=Physo157362;rank=5 scaffold_43 . exon 196434 196646 . + . ID=Physo157362.5;Parent=Physo157362;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_43 . CDS 196722 197051 . + 0 ID=Physo157362;Parent=Physo157362;rank=6 scaffold_43 . exon 196722 197051 . + . ID=Physo157362.6;Parent=Physo157362;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_43 . CDS 197081 198702 . + 0 ID=Physo157362;Parent=Physo157362;rank=7 scaffold_43 . exon 197081 198702 . + . ID=Physo157362.7;Parent=Physo157362;constitutive=1;ensembl_phase=1;rank=7 scaffold_43 . repeat_region 199054 199063 . ? . description=dust scaffold_43 . biological_region 201050 201052 0.999 - . logic_name=eponine scaffold_43 . biological_region 201134 201134 0.999 + . logic_name=eponine scaffold_43 . biological_region 201258 201263 0.999 + . logic_name=eponine scaffold_43 . biological_region 201336 201342 0.999 + . logic_name=eponine scaffold_43 . biological_region 203060 203064 0.999 - . logic_name=eponine scaffold_43 . biological_region 203149 203154 0.999 - . logic_name=eponine scaffold_43 . biological_region 203360 203362 0.999 + . logic_name=eponine scaffold_43 . biological_region 203785 203786 0.999 - . logic_name=eponine scaffold_43 . biological_region 203877 203880 0.999 + . logic_name=eponine scaffold_43 . biological_region 204164 204165 0.999 + . logic_name=eponine scaffold_43 . biological_region 204172 204175 0.999 - . logic_name=eponine scaffold_43 . biological_region 205053 205055 0.999 - . logic_name=eponine scaffold_43 . biological_region 205087 205091 0.999 + . logic_name=eponine scaffold_43 . biological_region 205510 205514 0.999 - . logic_name=eponine scaffold_43 . biological_region 205534 205541 0.999 - . logic_name=eponine scaffold_43 . repeat_region 205547 205561 . ? . description=dust scaffold_43 . biological_region 206388 206390 0.999 - . logic_name=eponine scaffold_43 . biological_region 206472 206472 0.999 + . logic_name=eponine scaffold_43 . biological_region 206741 206743 0.999 - . logic_name=eponine scaffold_43 . repeat_region 207500 207508 . ? . description=dust scaffold_43 ensembl protein_coding_gene 203995 205489 . + . ID=Physo136119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430052;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 203995 205489 . + . ID=Physo136119;Parent=Physo136119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 203995 204094 . + 0 ID=Physo136119;Parent=Physo136119;rank=1 scaffold_43 . exon 203995 204094 . + . ID=Physo136119.1;Parent=Physo136119;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 204282 205489 . + 0 ID=Physo136119;Parent=Physo136119;rank=2 scaffold_43 . exon 204282 205489 . + . ID=Physo136119.2;Parent=Physo136119;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 ensembl protein_coding_gene 206286 207202 . + . ID=Physo136120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430053;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 206286 207202 . + . ID=Physo136120;Parent=Physo136120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 206286 206962 . + 0 ID=Physo136120;Parent=Physo136120;rank=1 scaffold_43 . exon 206286 206962 . + . ID=Physo136120.1;Parent=Physo136120;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 207043 207202 . + 0 ID=Physo136120;Parent=Physo136120;rank=2 scaffold_43 . exon 207043 207202 . + . ID=Physo136120.2;Parent=Physo136120;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 ensembl protein_coding_gene 207511 208322 . - . ID=Physo136121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430054;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 207511 208322 . - . ID=Physo136121;Parent=Physo136121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 207511 207546 . - 0 ID=Physo136121;Parent=Physo136121;rank=4 scaffold_43 . exon 207511 207546 . - . ID=Physo136121.4;Parent=Physo136121;constitutive=1;rank=4 scaffold_43 . CDS 207584 207773 . - 0 ID=Physo136121;Parent=Physo136121;rank=3 scaffold_43 . exon 207584 207773 . - . ID=Physo136121.3;Parent=Physo136121;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 207892 207978 . - 0 ID=Physo136121;Parent=Physo136121;rank=2 scaffold_43 . exon 207892 207978 . - . ID=Physo136121.2;Parent=Physo136121;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_43 . CDS 208015 208322 . - 0 ID=Physo136121;Parent=Physo136121;rank=1 scaffold_43 . exon 208015 208322 . - . ID=Physo136121.1;Parent=Physo136121;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 213606 215654 . + . ID=Physo108923;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_430003;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 213606 215654 . + . ID=Physo108923;Parent=Physo108923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 213606 213713 . + 0 ID=Physo108923;Parent=Physo108923;rank=1 scaffold_43 . exon 213606 213713 . + . ID=Physo108923.1;Parent=Physo108923;constitutive=1;rank=1 scaffold_43 . CDS 213735 215654 . + 0 ID=Physo108923;Parent=Physo108923;rank=2 scaffold_43 . exon 213735 215654 . + . ID=Physo108923.2;Parent=Physo108923;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 209687 211365 . - . ID=Physo136122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430055;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 209687 211365 . - . ID=Physo136122;Parent=Physo136122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 209687 210706 . - 0 ID=Physo136122;Parent=Physo136122;rank=2 scaffold_43 . exon 209687 210706 . - . ID=Physo136122.2;Parent=Physo136122;constitutive=1;rank=2 scaffold_43 . CDS 210793 211365 . - 0 ID=Physo136122;Parent=Physo136122;rank=1 scaffold_43 . exon 210793 211365 . - . ID=Physo136122.1;Parent=Physo136122;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 212087 212842 . - . ID=Physo136123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430056;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 212087 212842 . - . ID=Physo136123;Parent=Physo136123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 212087 212147 . - 0 ID=Physo136123;Parent=Physo136123;rank=2 scaffold_43 . exon 212087 212147 . - . ID=Physo136123.2;Parent=Physo136123;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 212223 212842 . - 0 ID=Physo136123;Parent=Physo136123;rank=1 scaffold_43 . exon 212223 212842 . - . ID=Physo136123.1;Parent=Physo136123;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . biological_region 220149 220154 0.999 + . logic_name=eponine scaffold_43 . biological_region 220158 220164 0.999 - . logic_name=eponine scaffold_43 . biological_region 220254 220259 0.999 - . logic_name=eponine scaffold_43 . biological_region 220940 220946 0.999 + . logic_name=eponine scaffold_43 . biological_region 221063 221065 0.999 - . logic_name=eponine scaffold_43 . biological_region 221981 221983 0.999 + . logic_name=eponine scaffold_43 . biological_region 222288 222292 0.999 - . logic_name=eponine scaffold_43 . biological_region 222373 222380 0.999 - . logic_name=eponine scaffold_43 . biological_region 223696 223699 0.999 - . logic_name=eponine scaffold_43 . repeat_region 227717 227725 . ? . description=dust scaffold_43 . repeat_region 228001 228015 . ? . description=dust scaffold_43 ensembl protein_coding_gene 220773 222642 . - . ID=Physo136125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430058;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 220773 222642 . - . ID=Physo136125;Parent=Physo136125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 220773 220973 . - 0 ID=Physo136125;Parent=Physo136125;rank=5 scaffold_43 . exon 220773 220973 . - . ID=Physo136125.5;Parent=Physo136125;constitutive=1;rank=5 scaffold_43 . CDS 221045 221072 . - 0 ID=Physo136125;Parent=Physo136125;rank=4 scaffold_43 . exon 221045 221072 . - . ID=Physo136125.4;Parent=Physo136125;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 221237 221490 . - 0 ID=Physo136125;Parent=Physo136125;rank=3 scaffold_43 . exon 221237 221490 . - . ID=Physo136125.3;Parent=Physo136125;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . CDS 221722 222497 . - 0 ID=Physo136125;Parent=Physo136125;rank=2 scaffold_43 . exon 221722 222497 . - . ID=Physo136125.2;Parent=Physo136125;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 222525 222642 . - 0 ID=Physo136125;Parent=Physo136125;rank=1 scaffold_43 . exon 222525 222642 . - . ID=Physo136125.1;Parent=Physo136125;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . repeat_region 232364 232611 . - . description=GypsyPi-1c_I-int scaffold_43 . repeat_region 232636 232842 . - . description=GypsyPi-1c_I-int scaffold_43 . repeat_region 233159 234534 . - . description=GypsyPi-1c_I-int scaffold_43 . repeat_region 233864 233886 . ? . description=trf scaffold_43 ensembl protein_coding_gene 230294 231799 . + . ID=Physo136126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430059;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 230294 231799 . + . ID=Physo136126;Parent=Physo136126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 230294 230552 . + 0 ID=Physo136126;Parent=Physo136126;rank=1 scaffold_43 . exon 230294 230552 . + . ID=Physo136126.1;Parent=Physo136126;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 230573 231270 . + 0 ID=Physo136126;Parent=Physo136126;rank=2 scaffold_43 . exon 230573 231270 . + . ID=Physo136126.2;Parent=Physo136126;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 231311 231799 . + 0 ID=Physo136126;Parent=Physo136126;rank=3 scaffold_43 . exon 231311 231799 . + . ID=Physo136126.3;Parent=Physo136126;constitutive=1;rank=3 scaffold_43 ensembl protein_coding_gene 232052 232610 . - . ID=Physo136127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430060;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 232052 232610 . - . ID=Physo136127;Parent=Physo136127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 232052 232058 . - 0 ID=Physo136127;Parent=Physo136127;rank=2 scaffold_43 . exon 232052 232058 . - . ID=Physo136127.2;Parent=Physo136127;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 232099 232610 . - 0 ID=Physo136127;Parent=Physo136127;rank=1 scaffold_43 . exon 232099 232610 . - . ID=Physo136127.1;Parent=Physo136127;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 233616 234647 . - . ID=Physo136128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430061;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 233616 234647 . - . ID=Physo136128;Parent=Physo136128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 233616 234647 . - 0 ID=Physo136128;Parent=Physo136128;rank=1 scaffold_43 . exon 233616 234647 . - . ID=Physo136128.1;Parent=Physo136128;constitutive=1;rank=1 scaffold_43 . biological_region 244284 244285 0.999 + . logic_name=eponine scaffold_43 . repeat_region 245007 245014 . ? . description=dust scaffold_43 . biological_region 245670 245670 0.999 - . logic_name=eponine scaffold_43 . biological_region 246070 246075 0.999 + . logic_name=eponine scaffold_43 . biological_region 246073 246077 0.999 - . logic_name=eponine scaffold_43 . biological_region 246291 246292 0.999 - . logic_name=eponine scaffold_43 . biological_region 246629 246629 0.999 - . logic_name=eponine scaffold_43 . biological_region 247367 247372 0.999 - . logic_name=eponine scaffold_43 . biological_region 247425 247428 0.999 + . logic_name=eponine scaffold_43 . repeat_region 247832 248013 . - . description=GypsyPi-1c_LTR scaffold_43 . biological_region 248389 248390 0.999 + . logic_name=eponine scaffold_43 . biological_region 248584 248589 0.999 + . logic_name=eponine scaffold_43 ensembl protein_coding_gene 242670 243014 . - . ID=Physo136129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430062;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 242670 243014 . - . ID=Physo136129;Parent=Physo136129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 242670 243014 . - 0 ID=Physo136129;Parent=Physo136129;rank=1 scaffold_43 . exon 242670 243014 . - . ID=Physo136129.1;Parent=Physo136129;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 248321 250522 . + . ID=Physo136130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430063;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 248321 250522 . + . ID=Physo136130;Parent=Physo136130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 248321 249846 . + 0 ID=Physo136130;Parent=Physo136130;rank=1 scaffold_43 . exon 248321 249846 . + . ID=Physo136130.1;Parent=Physo136130;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 249923 250154 . + 0 ID=Physo136130;Parent=Physo136130;rank=2 scaffold_43 . CDS 250253 250522 . + 0 ID=Physo136130;Parent=Physo136130;rank=3 scaffold_43 . repeat_region 249026 255786 . - . description=GypsyPi-1c_I-int scaffold_43 . repeat_region 253710 253805 . ? . description=trf scaffold_43 . repeat_region 253737 253807 . ? . description=trf scaffold_43 . repeat_region 253790 253955 . ? . description=trf scaffold_43 . repeat_region 258639 258662 . ? . description=trf scaffold_43 . exon 249923 250154 . + . ID=Physo136130.2;Parent=Physo136130;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . exon 250253 250522 . + . ID=Physo136130.3;Parent=Physo136130;constitutive=1;rank=3 scaffold_43 ensembl protein_coding_gene 250764 255699 . - . ID=Physo136131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430064;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 250764 255699 . - . ID=Physo136131;Parent=Physo136131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 250764 252124 . - 0 ID=Physo136131;Parent=Physo136131;rank=5 scaffold_43 . exon 250764 252124 . - . ID=Physo136131.5;Parent=Physo136131;constitutive=1;ensembl_phase=1;rank=5 scaffold_43 . CDS 252205 252697 . - 0 ID=Physo136131;Parent=Physo136131;rank=4 scaffold_43 . exon 252205 252697 . - . ID=Physo136131.4;Parent=Physo136131;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_43 . CDS 252821 254656 . - 0 ID=Physo136131;Parent=Physo136131;rank=3 scaffold_43 . exon 252821 254656 . - . ID=Physo136131.3;Parent=Physo136131;constitutive=1;rank=3 scaffold_43 . CDS 254918 255334 . - 0 ID=Physo136131;Parent=Physo136131;rank=2 scaffold_43 . exon 254918 255334 . - . ID=Physo136131.2;Parent=Physo136131;constitutive=1;rank=2 scaffold_43 . CDS 255463 255699 . - 0 ID=Physo136131;Parent=Physo136131;rank=1 scaffold_43 . exon 255463 255699 . - . ID=Physo136131.1;Parent=Physo136131;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 256666 258128 . + . ID=Physo136132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430065;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 256666 258128 . + . ID=Physo136132;Parent=Physo136132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 256666 256860 . + 0 ID=Physo136132;Parent=Physo136132;rank=1 scaffold_43 . exon 256666 256860 . + . ID=Physo136132.1;Parent=Physo136132;constitutive=1;rank=1 scaffold_43 . CDS 256930 256998 . + 0 ID=Physo136132;Parent=Physo136132;rank=2 scaffold_43 . exon 256930 256998 . + . ID=Physo136132.2;Parent=Physo136132;constitutive=1;rank=2 scaffold_43 . CDS 257050 257351 . + 0 ID=Physo136132;Parent=Physo136132;rank=3 scaffold_43 . exon 257050 257351 . + . ID=Physo136132.3;Parent=Physo136132;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . CDS 257411 257708 . + 0 ID=Physo136132;Parent=Physo136132;rank=4 scaffold_43 . exon 257411 257708 . + . ID=Physo136132.4;Parent=Physo136132;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 257733 258128 . + 0 ID=Physo136132;Parent=Physo136132;rank=5 scaffold_43 . exon 257733 258128 . + . ID=Physo136132.5;Parent=Physo136132;constitutive=1;rank=5 scaffold_43 ensembl protein_coding_gene 258581 259600 . + . ID=Physo136133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430066;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 258581 259600 . + . ID=Physo136133;Parent=Physo136133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 258581 258606 . + 0 ID=Physo136133;Parent=Physo136133;rank=1 scaffold_43 . exon 258581 258606 . + . ID=Physo136133.1;Parent=Physo136133;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 258736 259525 . + 0 ID=Physo136133;Parent=Physo136133;rank=2 scaffold_43 . biological_region 258889 258894 0.999 - . logic_name=eponine scaffold_43 . biological_region 259922 259924 0.999 - . logic_name=eponine scaffold_43 . biological_region 260944 260948 0.999 - . logic_name=eponine scaffold_43 . biological_region 261267 261270 0.999 + . logic_name=eponine scaffold_43 . biological_region 261433 261437 0.999 + . logic_name=eponine scaffold_43 . biological_region 263505 263505 0.999 - . logic_name=eponine scaffold_43 . biological_region 265023 265027 0.999 + . logic_name=eponine scaffold_43 . repeat_region 266229 266237 . ? . description=dust scaffold_43 . repeat_region 267608 267615 . ? . description=dust scaffold_43 . biological_region 267808 267809 0.999 + . logic_name=eponine scaffold_43 . exon 258736 259600 . + . ID=Physo136133.2;Parent=Physo136133;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_43 ensembl protein_coding_gene 260120 261069 . + . ID=Physo136134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430067;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 260120 261069 . + . ID=Physo136134;Parent=Physo136134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 260120 260321 . + . ID=Physo136134.1;Parent=Physo136134;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_43 . CDS 260161 260321 . + 0 ID=Physo136134;Parent=Physo136134;rank=1 scaffold_43 . CDS 260382 260994 . + 0 ID=Physo136134;Parent=Physo136134;rank=2 scaffold_43 . exon 260382 261069 . + . ID=Physo136134.2;Parent=Physo136134;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_43 ensembl protein_coding_gene 261631 262685 . + . ID=Physo136135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430068;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 261631 262685 . + . ID=Physo136135;Parent=Physo136135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 261631 261791 . + 0 ID=Physo136135;Parent=Physo136135;rank=1 scaffold_43 . exon 261631 261791 . + . ID=Physo136135.1;Parent=Physo136135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 261862 262527 . + 0 ID=Physo136135;Parent=Physo136135;rank=2 scaffold_43 . exon 261862 262527 . + . ID=Physo136135.2;Parent=Physo136135;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_43 . CDS 262610 262685 . + 0 ID=Physo136135;Parent=Physo136135;rank=3 scaffold_43 . exon 262610 262685 . + . ID=Physo136135.3;Parent=Physo136135;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 ensembl protein_coding_gene 266710 268607 . + . ID=Physo136136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430069;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 266710 268607 . + . ID=Physo136136;Parent=Physo136136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 266710 266870 . + 0 ID=Physo136136;Parent=Physo136136;rank=1 scaffold_43 . exon 266710 266870 . + . ID=Physo136136.1;Parent=Physo136136;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 266944 267031 . + 0 ID=Physo136136;Parent=Physo136136;rank=2 scaffold_43 . exon 266944 267031 . + . ID=Physo136136.2;Parent=Physo136136;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 267198 267370 . + 0 ID=Physo136136;Parent=Physo136136;rank=3 scaffold_43 . exon 267198 267370 . + . ID=Physo136136.3;Parent=Physo136136;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . CDS 267926 268607 . + 0 ID=Physo136136;Parent=Physo136136;rank=4 scaffold_43 . exon 267926 268607 . + . ID=Physo136136.4;Parent=Physo136136;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . repeat_region 278305 278347 . ? . description=trf scaffold_43 ensembl protein_coding_gene 272704 273640 . + . ID=Physo136137;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430070;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 272704 273640 . + . ID=Physo136137;Parent=Physo136137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 272704 272724 . + 0 ID=Physo136137;Parent=Physo136137;rank=1 scaffold_43 . exon 272704 272724 . + . ID=Physo136137.1;Parent=Physo136137;constitutive=1;rank=1 scaffold_43 . CDS 272763 273485 . + 0 ID=Physo136137;Parent=Physo136137;rank=2 scaffold_43 . exon 272763 273485 . + . ID=Physo136137.2;Parent=Physo136137;constitutive=1;rank=2 scaffold_43 . CDS 273554 273640 . + 0 ID=Physo136137;Parent=Physo136137;rank=3 scaffold_43 . exon 273554 273640 . + . ID=Physo136137.3;Parent=Physo136137;constitutive=1;rank=3 scaffold_43 . biological_region 278938 278939 0.999 + . logic_name=eponine scaffold_43 . biological_region 279000 279002 0.999 + . logic_name=eponine scaffold_43 . repeat_region 280049 280057 . ? . description=dust scaffold_43 . repeat_region 282054 282084 . ? . description=dust scaffold_43 ensembl protein_coding_gene 278823 279398 . - . ID=Physo136138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430071;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 278823 279398 . - . ID=Physo136138;Parent=Physo136138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 278823 279398 . - 0 ID=Physo136138;Parent=Physo136138;rank=1 scaffold_43 . exon 278823 279398 . - . ID=Physo136138.1;Parent=Physo136138;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 282843 283830 . + . ID=Physo136139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430072;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 282843 283830 . + . ID=Physo136139;Parent=Physo136139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 282843 283075 . + 0 ID=Physo136139;Parent=Physo136139;rank=1 scaffold_43 . exon 282843 283075 . + . ID=Physo136139.1;Parent=Physo136139;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 283215 283830 . + 0 ID=Physo136139;Parent=Physo136139;rank=2 scaffold_43 . exon 283215 283830 . + . ID=Physo136139.2;Parent=Physo136139;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 ensembl protein_coding_gene 284489 285559 . - . ID=Physo136140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430073;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 284489 285559 . - . ID=Physo136140;Parent=Physo136140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 284489 285559 . - 0 ID=Physo136140;Parent=Physo136140;rank=1 scaffold_43 . exon 284489 285559 . - . ID=Physo136140.1;Parent=Physo136140;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 286924 287451 . - . ID=Physo136141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430074;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 286924 287451 . - . ID=Physo136141;Parent=Physo136141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 286924 287374 . - 0 ID=Physo136141;Parent=Physo136141;rank=2 scaffold_43 . exon 286924 287374 . - . ID=Physo136141.2;Parent=Physo136141;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 287399 287451 . - 0 ID=Physo136141;Parent=Physo136141;rank=1 scaffold_43 . exon 287399 287451 . - . ID=Physo136141.1;Parent=Physo136141;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 293798 294616 . - . ID=Physo136144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430077;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 293798 294616 . - . ID=Physo136144;Parent=Physo136144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 293798 294616 . - 0 ID=Physo136144;Parent=Physo136144;rank=1 scaffold_43 . exon 293798 294616 . - . ID=Physo136144.1;Parent=Physo136144;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 294936 295748 . - . ID=Physo136145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430078;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 294936 295748 . - . ID=Physo136145;Parent=Physo136145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 294936 295748 . - 0 ID=Physo136145;Parent=Physo136145;rank=1 scaffold_43 . exon 294936 295748 . - . ID=Physo136145.1;Parent=Physo136145;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 296249 297137 . + . ID=Physo136146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430079;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 296249 297137 . + . ID=Physo136146;Parent=Physo136146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 296249 296299 . + 0 ID=Physo136146;Parent=Physo136146;rank=1 scaffold_43 . exon 296249 296299 . + . ID=Physo136146.1;Parent=Physo136146;constitutive=1;rank=1 scaffold_43 . CDS 296365 296423 . + 0 ID=Physo136146;Parent=Physo136146;rank=2 scaffold_43 . exon 296365 296423 . + . ID=Physo136146.2;Parent=Physo136146;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_43 . CDS 296513 297137 . + 0 ID=Physo136146;Parent=Physo136146;rank=3 scaffold_43 . exon 296513 297137 . + . ID=Physo136146.3;Parent=Physo136146;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 ensembl protein_coding_gene 297269 298075 . - . ID=Physo136147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430080;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 297269 298075 . - . ID=Physo136147;Parent=Physo136147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 297269 298075 . - 0 ID=Physo136147;Parent=Physo136147;rank=1 scaffold_43 . exon 297269 298075 . - . ID=Physo136147.1;Parent=Physo136147;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 298402 299385 . - . ID=Physo136148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430081;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 298402 299385 . - . ID=Physo136148;Parent=Physo136148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 298402 299385 . - 0 ID=Physo136148;Parent=Physo136148;rank=1 scaffold_43 . exon 298402 299385 . - . ID=Physo136148.1;Parent=Physo136148;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 289073 292633 . - . ID=Physo157364;biotype=protein_coding;external_name=C_scaffold_43000009;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 289073 292633 . - . ID=Physo157364;Parent=Physo157364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 289073 289397 . - 0 ID=Physo157364;Parent=Physo157364;rank=5 scaffold_43 . exon 289073 289397 . - . ID=Physo157364.5;Parent=Physo157364;constitutive=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 289723 290412 . - 0 ID=Physo157364;Parent=Physo157364;rank=4 scaffold_43 . exon 289723 290412 . - . ID=Physo157364.4;Parent=Physo157364;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_43 . CDS 290820 291466 . - 0 ID=Physo157364;Parent=Physo157364;rank=3 scaffold_43 . exon 290820 291466 . - . ID=Physo157364.3;Parent=Physo157364;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . CDS 291899 291983 . - 0 ID=Physo157364;Parent=Physo157364;rank=2 scaffold_43 . exon 291899 291983 . - . ID=Physo157364.2;Parent=Physo157364;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 292005 292633 . - 0 ID=Physo157364;Parent=Physo157364;rank=1 scaffold_43 . exon 292005 292633 . - . ID=Physo157364.1;Parent=Physo157364;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . biological_region 298541 298544 0.999 + . logic_name=eponine scaffold_43 . biological_region 299765 299768 0.999 + . logic_name=eponine scaffold_43 . biological_region 300995 300999 0.999 + . logic_name=eponine scaffold_43 . biological_region 301031 301031 0.999 - . logic_name=eponine scaffold_43 . biological_region 303086 303089 0.999 - . logic_name=eponine scaffold_43 . repeat_region 304762 304801 . ? . description=trf scaffold_43 . repeat_region 304765 304809 . ? . description=trf scaffold_43 ensembl protein_coding_gene 303309 303944 . - . ID=Physo136149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430082;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 303309 303944 . - . ID=Physo136149;Parent=Physo136149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 303309 303722 . - 0 ID=Physo136149;Parent=Physo136149;rank=3 scaffold_43 . exon 303309 303722 . - . ID=Physo136149.3;Parent=Physo136149;constitutive=1;rank=3 scaffold_43 . CDS 303838 303862 . - 0 ID=Physo136149;Parent=Physo136149;rank=2 scaffold_43 . exon 303838 303862 . - . ID=Physo136149.2;Parent=Physo136149;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 303931 303944 . - 0 ID=Physo136149;Parent=Physo136149;rank=1 scaffold_43 . exon 303931 303944 . - . ID=Physo136149.1;Parent=Physo136149;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 304907 311046 . + . ID=Physo136150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430083;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 304907 311046 . + . ID=Physo136150;Parent=Physo136150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 304907 306112 . + 0 ID=Physo136150;Parent=Physo136150;rank=1 scaffold_43 . exon 304907 306112 . + . ID=Physo136150.1;Parent=Physo136150;constitutive=1;rank=1 scaffold_43 . CDS 306360 306849 . + 0 ID=Physo136150;Parent=Physo136150;rank=2 scaffold_43 . exon 306360 306849 . + . ID=Physo136150.2;Parent=Physo136150;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 307271 307717 . + 0 ID=Physo136150;Parent=Physo136150;rank=3 scaffold_43 . exon 307271 307717 . + . ID=Physo136150.3;Parent=Physo136150;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 307753 309240 . + 0 ID=Physo136150;Parent=Physo136150;rank=4 scaffold_43 . exon 307753 309240 . + . ID=Physo136150.4;Parent=Physo136150;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 309543 309598 . + 0 ID=Physo136150;Parent=Physo136150;rank=5 scaffold_43 . CDS 310327 311046 . + 0 ID=Physo136150;Parent=Physo136150;rank=6 scaffold_43 . repeat_region 311109 312272 . ? . description=dust scaffold_43 . repeat_region 314140 328350 . ? . description=dust scaffold_43 . exon 309543 309598 . + . ID=Physo136150.5;Parent=Physo136150;constitutive=1;ensembl_phase=1;rank=5 scaffold_43 . exon 310327 311046 . + . ID=Physo136150.6;Parent=Physo136150;constitutive=1;rank=6 scaffold_43 ensembl protein_coding_gene 313695 314139 . - . ID=Physo136151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430084;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 313695 314139 . - . ID=Physo136151;Parent=Physo136151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 313695 314139 . - . ID=Physo136151.1;Parent=Physo136151;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 313743 314138 . - 0 ID=Physo136151;Parent=Physo136151;rank=1 scaffold_43 . repeat_region 328351 334052 . ? . description=dust scaffold_43 . repeat_region 336535 336558 . ? . description=dust scaffold_43 . repeat_region 338072 338082 . ? . description=dust scaffold_43 . repeat_region 341003 342245 . + . description=Gypsy-1-I_PI-int scaffold_43 . repeat_region 342967 343290 . + . description=Gypsy-1-I_PI-int scaffold_43 . biological_region 343392 343393 0.999 - . logic_name=eponine scaffold_43 . biological_region 344738 344744 0.999 - . logic_name=eponine scaffold_43 . biological_region 345927 345928 0.999 - . logic_name=eponine scaffold_43 . repeat_region 347098 347124 . ? . description=trf scaffold_43 . repeat_region 350036 350122 . + . description=(CAG)n scaffold_43 . repeat_region 357707 357756 . ? . description=dust scaffold_43 ensembl protein_coding_gene 349221 350171 . + . ID=Physo136152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430085;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 349221 350171 . + . ID=Physo136152;Parent=Physo136152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 349221 349490 . + 0 ID=Physo136152;Parent=Physo136152;rank=1 scaffold_43 . exon 349221 349490 . + . ID=Physo136152.1;Parent=Physo136152;constitutive=1;rank=1 scaffold_43 . CDS 349680 349786 . + 0 ID=Physo136152;Parent=Physo136152;rank=2 scaffold_43 . exon 349680 349786 . + . ID=Physo136152.2;Parent=Physo136152;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_43 . CDS 350030 350171 . + 0 ID=Physo136152;Parent=Physo136152;rank=3 scaffold_43 . exon 350030 350171 . + . ID=Physo136152.3;Parent=Physo136152;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 ensembl protein_coding_gene 352635 354373 . + . ID=Physo136153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430086;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 352635 354373 . + . ID=Physo136153;Parent=Physo136153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 352635 353436 . + 0 ID=Physo136153;Parent=Physo136153;rank=1 scaffold_43 . exon 352635 353436 . + . ID=Physo136153.1;Parent=Physo136153;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 353609 353856 . + 0 ID=Physo136153;Parent=Physo136153;rank=2 scaffold_43 . exon 353609 353856 . + . ID=Physo136153.2;Parent=Physo136153;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 353950 353989 . + 0 ID=Physo136153;Parent=Physo136153;rank=3 scaffold_43 . exon 353950 353989 . + . ID=Physo136153.3;Parent=Physo136153;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_43 . CDS 354090 354373 . + 0 ID=Physo136153;Parent=Physo136153;rank=4 scaffold_43 . exon 354090 354373 . + . ID=Physo136153.4;Parent=Physo136153;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 ensembl protein_coding_gene 355129 356323 . - . ID=Physo136154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430087;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 355129 356323 . - . ID=Physo136154;Parent=Physo136154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 355129 355227 . - 0 ID=Physo136154;Parent=Physo136154;rank=5 scaffold_43 . exon 355129 355227 . - . ID=Physo136154.5;Parent=Physo136154;constitutive=1;rank=5 scaffold_43 . CDS 355284 355523 . - 0 ID=Physo136154;Parent=Physo136154;rank=4 scaffold_43 . exon 355284 355523 . - . ID=Physo136154.4;Parent=Physo136154;constitutive=1;rank=4 scaffold_43 . CDS 355563 355676 . - 0 ID=Physo136154;Parent=Physo136154;rank=3 scaffold_43 . exon 355563 355676 . - . ID=Physo136154.3;Parent=Physo136154;constitutive=1;rank=3 scaffold_43 . CDS 355737 356072 . - 0 ID=Physo136154;Parent=Physo136154;rank=2 scaffold_43 . exon 355737 356072 . - . ID=Physo136154.2;Parent=Physo136154;constitutive=1;rank=2 scaffold_43 . CDS 356195 356323 . - 0 ID=Physo136154;Parent=Physo136154;rank=1 scaffold_43 . exon 356195 356323 . - . ID=Physo136154.1;Parent=Physo136154;constitutive=1;rank=1 scaffold_43 . repeat_region 361168 361280 . ? . description=trf scaffold_43 . repeat_region 364134 364358 . ? . description=trf scaffold_43 . repeat_region 364171 364424 . ? . description=trf scaffold_43 . biological_region 364379 364381 0.999 + . logic_name=eponine scaffold_43 . biological_region 364458 364461 0.999 + . logic_name=eponine scaffold_43 . biological_region 364544 364547 0.999 + . logic_name=eponine scaffold_43 . biological_region 364572 364573 0.999 - . logic_name=eponine scaffold_43 . biological_region 364796 364798 0.999 + . logic_name=eponine scaffold_43 . repeat_region 365143 367521 . + . description=GypsyPi-1c_I-int scaffold_43 ensembl protein_coding_gene 365477 366409 . + . ID=Physo108924;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_430004;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 365477 366409 . + . ID=Physo108924;Parent=Physo108924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 365477 366409 . + 0 ID=Physo108924;Parent=Physo108924;rank=1 scaffold_43 . exon 365477 366409 . + . ID=Physo108924.1;Parent=Physo108924;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 364468 365323 . + . ID=Physo136155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430088;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 364468 365323 . + . ID=Physo136155;Parent=Physo136155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 364468 364674 . + 0 ID=Physo136155;Parent=Physo136155;rank=1 scaffold_43 . exon 364468 364674 . + . ID=Physo136155.1;Parent=Physo136155;constitutive=1;rank=1 scaffold_43 . CDS 364706 365323 . + 0 ID=Physo136155;Parent=Physo136155;rank=2 scaffold_43 . exon 364706 365323 . + . ID=Physo136155.2;Parent=Physo136155;constitutive=1;rank=2 scaffold_43 ensembl protein_coding_gene 367005 368385 . + . ID=Physo136157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430090;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 367005 368385 . + . ID=Physo136157;Parent=Physo136157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 367005 367869 . + 0 ID=Physo136157;Parent=Physo136157;rank=1 scaffold_43 . exon 367005 367869 . + . ID=Physo136157.1;Parent=Physo136157;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 367915 368065 . + 0 ID=Physo136157;Parent=Physo136157;rank=2 scaffold_43 . exon 367915 368065 . + . ID=Physo136157.2;Parent=Physo136157;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 368100 368385 . + 0 ID=Physo136157;Parent=Physo136157;rank=3 scaffold_43 . exon 368100 368385 . + . ID=Physo136157.3;Parent=Physo136157;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . repeat_region 369523 369531 . ? . description=dust scaffold_43 ensembl protein_coding_gene 370427 372709 . + . ID=Physo136158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430091;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 370427 372709 . + . ID=Physo136158;Parent=Physo136158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 370427 371148 . + 0 ID=Physo136158;Parent=Physo136158;rank=1 scaffold_43 . exon 370427 371148 . + . ID=Physo136158.1;Parent=Physo136158;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 371357 371424 . + 0 ID=Physo136158;Parent=Physo136158;rank=2 scaffold_43 . exon 371357 371424 . + . ID=Physo136158.2;Parent=Physo136158;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 371465 371685 . + 0 ID=Physo136158;Parent=Physo136158;rank=3 scaffold_43 . exon 371465 371685 . + . ID=Physo136158.3;Parent=Physo136158;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 371823 371895 . + 0 ID=Physo136158;Parent=Physo136158;rank=4 scaffold_43 . exon 371823 371895 . + . ID=Physo136158.4;Parent=Physo136158;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_43 . CDS 372090 372709 . + 0 ID=Physo136158;Parent=Physo136158;rank=5 scaffold_43 . exon 372090 372709 . + . ID=Physo136158.5;Parent=Physo136158;constitutive=1;ensembl_phase=1;rank=5 scaffold_43 ensembl protein_coding_gene 376177 378009 . - . ID=Physo136159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430092;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 376177 378009 . - . ID=Physo136159;Parent=Physo136159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 376177 376576 . - 0 ID=Physo136159;Parent=Physo136159;rank=3 scaffold_43 . exon 376177 376576 . - . ID=Physo136159.3;Parent=Physo136159;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 376633 376657 . - 0 ID=Physo136159;Parent=Physo136159;rank=2 scaffold_43 . exon 376633 376657 . - . ID=Physo136159.2;Parent=Physo136159;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 376863 378009 . - 0 ID=Physo136159;Parent=Physo136159;rank=1 scaffold_43 . exon 376863 378009 . - . ID=Physo136159.1;Parent=Physo136159;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . repeat_region 388051 390417 . ? . description=dust scaffold_43 . biological_region 392955 392956 0.999 - . logic_name=eponine scaffold_43 . biological_region 394531 394534 0.999 - . logic_name=eponine scaffold_43 . repeat_region 394656 394705 . ? . description=dust scaffold_43 . biological_region 397472 397473 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 391901 392522 . + . ID=Physo136160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430093;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 391901 392522 . + . ID=Physo136160;Parent=Physo136160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 391901 392041 . + 0 ID=Physo136160;Parent=Physo136160;rank=1 scaffold_43 . exon 391901 392041 . + . ID=Physo136160.1;Parent=Physo136160;constitutive=1;rank=1 scaffold_43 . CDS 392142 392166 . + 0 ID=Physo136160;Parent=Physo136160;rank=2 scaffold_43 . exon 392142 392166 . + . ID=Physo136160.2;Parent=Physo136160;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 392263 392375 . + 0 ID=Physo136160;Parent=Physo136160;rank=3 scaffold_43 . exon 392263 392522 . + . ID=Physo136160.3;Parent=Physo136160;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_43 ensembl protein_coding_gene 396418 397039 . + . ID=Physo136161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430094;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 396418 397039 . + . ID=Physo136161;Parent=Physo136161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 396418 396558 . + 0 ID=Physo136161;Parent=Physo136161;rank=1 scaffold_43 . exon 396418 396558 . + . ID=Physo136161.1;Parent=Physo136161;constitutive=1;rank=1 scaffold_43 . CDS 396659 396683 . + 0 ID=Physo136161;Parent=Physo136161;rank=2 scaffold_43 . exon 396659 396683 . + . ID=Physo136161.2;Parent=Physo136161;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_43 . CDS 396780 396892 . + 0 ID=Physo136161;Parent=Physo136161;rank=3 scaffold_43 . exon 396780 397039 . + . ID=Physo136161.3;Parent=Physo136161;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_43 ensembl protein_coding_gene 399599 402563 . - . ID=Physo136162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430095;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 399599 402563 . - . ID=Physo136162;Parent=Physo136162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 399599 401695 . - 0 ID=Physo136162;Parent=Physo136162;rank=4 scaffold_43 . exon 399599 401695 . - . ID=Physo136162.4;Parent=Physo136162;constitutive=1;rank=4 scaffold_43 . CDS 401768 402127 . - 0 ID=Physo136162;Parent=Physo136162;rank=3 scaffold_43 . exon 401768 402127 . - . ID=Physo136162.3;Parent=Physo136162;constitutive=1;rank=3 scaffold_43 . CDS 402222 402246 . - 0 ID=Physo136162;Parent=Physo136162;rank=2 scaffold_43 . exon 402222 402246 . - . ID=Physo136162.2;Parent=Physo136162;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 402325 402563 . - 0 ID=Physo136162;Parent=Physo136162;rank=1 scaffold_43 . exon 402325 402563 . - . ID=Physo136162.1;Parent=Physo136162;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 403643 404501 . - . ID=Physo136163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430096;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 403643 404501 . - . ID=Physo136163;Parent=Physo136163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 403643 404279 . - 0 ID=Physo136163;Parent=Physo136163;rank=2 scaffold_43 . exon 403643 404279 . - . ID=Physo136163.2;Parent=Physo136163;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 404341 404501 . - 0 ID=Physo136163;Parent=Physo136163;rank=1 scaffold_43 . exon 404341 404501 . - . ID=Physo136163.1;Parent=Physo136163;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 404970 407085 . - . ID=Physo136164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430097;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 404970 407085 . - . ID=Physo136164;Parent=Physo136164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 404970 405597 . - 0 ID=Physo136164;Parent=Physo136164;rank=6 scaffold_43 . exon 404970 405597 . - . ID=Physo136164.6;Parent=Physo136164;constitutive=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 405665 405839 . - 0 ID=Physo136164;Parent=Physo136164;rank=5 scaffold_43 . exon 405665 405839 . - . ID=Physo136164.5;Parent=Physo136164;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_43 . CDS 406311 406413 . - 0 ID=Physo136164;Parent=Physo136164;rank=4 scaffold_43 . exon 406311 406413 . - . ID=Physo136164.4;Parent=Physo136164;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_43 . CDS 406496 406650 . - 0 ID=Physo136164;Parent=Physo136164;rank=3 scaffold_43 . exon 406496 406650 . - . ID=Physo136164.3;Parent=Physo136164;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 406701 406837 . - 0 ID=Physo136164;Parent=Physo136164;rank=2 scaffold_43 . exon 406701 406837 . - . ID=Physo136164.2;Parent=Physo136164;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 406925 407085 . - 0 ID=Physo136164;Parent=Physo136164;rank=1 scaffold_43 . exon 406925 407085 . - . ID=Physo136164.1;Parent=Physo136164;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 407551 408438 . - . ID=Physo136165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430098;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 407551 408438 . - . ID=Physo136165;Parent=Physo136165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 407551 408193 . - 0 ID=Physo136165;Parent=Physo136165;rank=2 scaffold_43 . exon 407551 408193 . - . ID=Physo136165.2;Parent=Physo136165;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 408278 408438 . - 0 ID=Physo136165;Parent=Physo136165;rank=1 scaffold_43 . biological_region 409512 409512 0.999 + . logic_name=eponine scaffold_43 . biological_region 410331 410334 0.999 - . logic_name=eponine scaffold_43 . biological_region 410483 410483 0.999 - . logic_name=eponine scaffold_43 . repeat_region 413819 413833 . ? . description=dust scaffold_43 . repeat_region 416010 416034 . ? . description=trf scaffold_43 . repeat_region 417301 417312 . ? . description=dust scaffold_43 . exon 408278 408438 . - . ID=Physo136165.1;Parent=Physo136165;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 409065 409633 . - . ID=Physo136166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430099;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 409065 409633 . - . ID=Physo136166;Parent=Physo136166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 409065 409376 . - 0 ID=Physo136166;Parent=Physo136166;rank=2 scaffold_43 . exon 409065 409376 . - . ID=Physo136166.2;Parent=Physo136166;constitutive=1;rank=2 scaffold_43 . CDS 409412 409633 . - 0 ID=Physo136166;Parent=Physo136166;rank=1 scaffold_43 . exon 409412 409633 . - . ID=Physo136166.1;Parent=Physo136166;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 410176 410984 . + . ID=Physo136167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430100;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 410176 410984 . + . ID=Physo136167;Parent=Physo136167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 410176 410290 . + 0 ID=Physo136167;Parent=Physo136167;rank=1 scaffold_43 . exon 410176 410290 . + . ID=Physo136167.1;Parent=Physo136167;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 410363 410441 . + 0 ID=Physo136167;Parent=Physo136167;rank=2 scaffold_43 . exon 410363 410441 . + . ID=Physo136167.2;Parent=Physo136167;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 410480 410984 . + 0 ID=Physo136167;Parent=Physo136167;rank=3 scaffold_43 . exon 410480 410984 . + . ID=Physo136167.3;Parent=Physo136167;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 ensembl protein_coding_gene 412189 413032 . - . ID=Physo136168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430101;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 412189 413032 . - . ID=Physo136168;Parent=Physo136168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 412189 412801 . - 0 ID=Physo136168;Parent=Physo136168;rank=2 scaffold_43 . exon 412189 412801 . - . ID=Physo136168.2;Parent=Physo136168;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 412872 413032 . - 0 ID=Physo136168;Parent=Physo136168;rank=1 scaffold_43 . exon 412872 413032 . - . ID=Physo136168.1;Parent=Physo136168;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 413847 415879 . - . ID=Physo136169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430102;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 413847 415879 . - . ID=Physo136169;Parent=Physo136169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 413847 414249 . - 0 ID=Physo136169;Parent=Physo136169;rank=5 scaffold_43 . exon 413847 414249 . - . ID=Physo136169.5;Parent=Physo136169;constitutive=1;ensembl_phase=2;rank=5 scaffold_43 . CDS 414296 414355 . - 0 ID=Physo136169;Parent=Physo136169;rank=4 scaffold_43 . exon 414296 414355 . - . ID=Physo136169.4;Parent=Physo136169;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_43 . CDS 414422 414597 . - 0 ID=Physo136169;Parent=Physo136169;rank=3 scaffold_43 . exon 414422 414597 . - . ID=Physo136169.3;Parent=Physo136169;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . CDS 415006 415639 . - 0 ID=Physo136169;Parent=Physo136169;rank=2 scaffold_43 . exon 415006 415639 . - . ID=Physo136169.2;Parent=Physo136169;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 415719 415879 . - 0 ID=Physo136169;Parent=Physo136169;rank=1 scaffold_43 . exon 415719 415879 . - . ID=Physo136169.1;Parent=Physo136169;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 417407 418375 . + . ID=Physo157368;biotype=protein_coding;external_name=C_scaffold_43000013;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 417407 418375 . + . ID=Physo157368;Parent=Physo157368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 417407 418375 . + 0 ID=Physo157368;Parent=Physo157368;rank=1 scaffold_43 . exon 417407 418375 . + . ID=Physo157368.1;Parent=Physo157368;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 427621 428510 . + . ID=Physo108925;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_430005;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 427621 428510 . + . ID=Physo108925;Parent=Physo108925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 427621 428510 . + . ID=Physo108925.1;Parent=Physo108925;constitutive=1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 427644 428510 . + 0 ID=Physo108925;Parent=Physo108925;rank=1 scaffold_43 ensembl protein_coding_gene 419418 421427 . + . ID=Physo136171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430104;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 419418 421427 . + . ID=Physo136171;Parent=Physo136171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 419418 420205 . + 0 ID=Physo136171;Parent=Physo136171;rank=1 scaffold_43 . exon 419418 420205 . + . ID=Physo136171.1;Parent=Physo136171;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 420533 421427 . + 0 ID=Physo136171;Parent=Physo136171;rank=2 scaffold_43 . exon 420533 421427 . + . ID=Physo136171.2;Parent=Physo136171;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 ensembl protein_coding_gene 421670 422339 . - . ID=Physo136172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430105;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 421670 422339 . - . ID=Physo136172;Parent=Physo136172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 421670 421700 . - 0 ID=Physo136172;Parent=Physo136172;rank=2 scaffold_43 . exon 421670 421700 . - . ID=Physo136172.2;Parent=Physo136172;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 421732 422339 . - 0 ID=Physo136172;Parent=Physo136172;rank=1 scaffold_43 . exon 421732 422339 . - . ID=Physo136172.1;Parent=Physo136172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 423296 426966 . + . ID=Physo157373;biotype=protein_coding;external_name=C_scaffold_43000018;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 423296 426966 . + . ID=Physo157373;Parent=Physo157373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 423296 423354 . + 0 ID=Physo157373;Parent=Physo157373;rank=1 scaffold_43 . exon 423296 423354 . + . ID=Physo157373.1;Parent=Physo157373;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 423432 423563 . + 0 ID=Physo157373;Parent=Physo157373;rank=2 scaffold_43 . exon 423432 423563 . + . ID=Physo157373.2;Parent=Physo157373;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_43 . CDS 423637 423902 . + 0 ID=Physo157373;Parent=Physo157373;rank=3 scaffold_43 . exon 423637 423902 . + . ID=Physo157373.3;Parent=Physo157373;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 423967 424025 . + 0 ID=Physo157373;Parent=Physo157373;rank=4 scaffold_43 . exon 423967 424025 . + . ID=Physo157373.4;Parent=Physo157373;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 424092 424229 . + 0 ID=Physo157373;Parent=Physo157373;rank=5 scaffold_43 . exon 424092 424229 . + . ID=Physo157373.5;Parent=Physo157373;constitutive=1;rank=5 scaffold_43 . CDS 424296 424369 . + 0 ID=Physo157373;Parent=Physo157373;rank=6 scaffold_43 . exon 424296 424369 . + . ID=Physo157373.6;Parent=Physo157373;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_43 . CDS 424424 424463 . + 0 ID=Physo157373;Parent=Physo157373;rank=7 scaffold_43 . exon 424424 424463 . + . ID=Physo157373.7;Parent=Physo157373;constitutive=1;ensembl_phase=2;rank=7 scaffold_43 . CDS 424528 424599 . + 0 ID=Physo157373;Parent=Physo157373;rank=8 scaffold_43 . exon 424528 424599 . + . ID=Physo157373.8;Parent=Physo157373;constitutive=1;rank=8 scaffold_43 . CDS 424671 424766 . + 0 ID=Physo157373;Parent=Physo157373;rank=9 scaffold_43 . exon 424671 424766 . + . ID=Physo157373.9;Parent=Physo157373;constitutive=1;rank=9 scaffold_43 . CDS 424831 424927 . + 0 ID=Physo157373;Parent=Physo157373;rank=10 scaffold_43 . exon 424831 424927 . + . ID=Physo157373.10;Parent=Physo157373;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_43 . CDS 424997 425523 . + 0 ID=Physo157373;Parent=Physo157373;rank=11 scaffold_43 . exon 424997 425523 . + . ID=Physo157373.11;Parent=Physo157373;constitutive=1;ensembl_phase=1;rank=11 scaffold_43 . CDS 425734 425802 . + 0 ID=Physo157373;Parent=Physo157373;rank=12 scaffold_43 . exon 425734 425802 . + . ID=Physo157373.12;Parent=Physo157373;constitutive=1;rank=12 scaffold_43 . CDS 425873 425939 . + 0 ID=Physo157373;Parent=Physo157373;rank=13 scaffold_43 . exon 425873 425939 . + . ID=Physo157373.13;Parent=Physo157373;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_43 . CDS 426015 426157 . + 0 ID=Physo157373;Parent=Physo157373;rank=14 scaffold_43 . exon 426015 426157 . + . ID=Physo157373.14;Parent=Physo157373;constitutive=1;ensembl_phase=1;rank=14 scaffold_43 . CDS 426222 426737 . + 0 ID=Physo157373;Parent=Physo157373;rank=15 scaffold_43 . exon 426222 426737 . + . ID=Physo157373.15;Parent=Physo157373;constitutive=1;rank=15 scaffold_43 . CDS 426814 426966 . + 0 ID=Physo157373;Parent=Physo157373;rank=16 scaffold_43 . exon 426814 426966 . + . ID=Physo157373.16;Parent=Physo157373;constitutive=1;rank=16 scaffold_43 . biological_region 429141 429142 0.999 + . logic_name=eponine scaffold_43 . biological_region 429186 429190 0.999 - . logic_name=eponine scaffold_43 . biological_region 430148 430152 0.999 + . logic_name=eponine scaffold_43 . repeat_region 430173 430243 . ? . description=trf scaffold_43 . biological_region 430203 430209 0.999 + . logic_name=eponine scaffold_43 . biological_region 430230 430232 0.999 + . logic_name=eponine scaffold_43 . biological_region 430250 430255 0.999 - . logic_name=eponine scaffold_43 . biological_region 430254 430262 0.999 + . logic_name=eponine scaffold_43 . biological_region 430305 430307 0.999 - . logic_name=eponine scaffold_43 . biological_region 430361 430365 0.999 - . logic_name=eponine scaffold_43 . repeat_region 430434 430453 . ? . description=trf scaffold_43 . repeat_region 430781 430788 . ? . description=dust scaffold_43 . repeat_region 432122 432130 . ? . description=dust scaffold_43 . biological_region 432805 432811 0.999 + . logic_name=eponine scaffold_43 . repeat_region 432832 432870 . ? . description=trf scaffold_43 . biological_region 433334 433335 0.999 + . logic_name=eponine scaffold_43 . biological_region 436841 436843 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 428771 430392 . - . ID=Physo136175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430108;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 428771 430392 . - . ID=Physo136175;Parent=Physo136175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 428771 429942 . - . ID=Physo136175.2;Parent=Physo136175;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_43 . CDS 428953 429942 . - 0 ID=Physo136175;Parent=Physo136175;rank=2 scaffold_43 . CDS 430027 430392 . - 0 ID=Physo136175;Parent=Physo136175;rank=1 scaffold_43 . exon 430027 430392 . - . ID=Physo136175.1;Parent=Physo136175;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 432726 433557 . - . ID=Physo136176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430109;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 432726 433557 . - . ID=Physo136176;Parent=Physo136176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 432726 433449 . - 0 ID=Physo136176;Parent=Physo136176;rank=2 scaffold_43 . exon 432726 433449 . - . ID=Physo136176.2;Parent=Physo136176;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 433472 433557 . - 0 ID=Physo136176;Parent=Physo136176;rank=1 scaffold_43 . exon 433472 433557 . - . ID=Physo136176.1;Parent=Physo136176;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 436724 437971 . + . ID=Physo136177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430110;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 436724 437971 . + . ID=Physo136177;Parent=Physo136177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 436724 437971 . + 0 ID=Physo136177;Parent=Physo136177;rank=1 scaffold_43 . exon 436724 437971 . + . ID=Physo136177.1;Parent=Physo136177;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 440931 441984 . + . ID=Physo108926;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_430006;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 440931 441984 . + . ID=Physo108926;Parent=Physo108926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 440931 441984 . + . ID=Physo108926.1;Parent=Physo108926;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 440985 441734 . + 0 ID=Physo108926;Parent=Physo108926;rank=1 scaffold_43 ensembl protein_coding_gene 438337 439050 . - . ID=Physo136178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430111;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 438337 439050 . - . ID=Physo136178;Parent=Physo136178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 438337 439050 . - 0 ID=Physo136178;Parent=Physo136178;rank=1 scaffold_43 . exon 438337 439050 . - . ID=Physo136178.1;Parent=Physo136178;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 444731 445928 . - . ID=Physo136180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430113;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 444731 445928 . - . ID=Physo136180;Parent=Physo136180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 444731 445551 . - 0 ID=Physo136180;Parent=Physo136180;rank=2 scaffold_43 . exon 444731 445551 . - . ID=Physo136180.2;Parent=Physo136180;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 445820 445928 . - 0 ID=Physo136180;Parent=Physo136180;rank=1 scaffold_43 . exon 445820 445928 . - . ID=Physo136180.1;Parent=Physo136180;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . repeat_region 449740 449880 . ? . description=trf scaffold_43 . repeat_region 449740 449883 . ? . description=trf scaffold_43 . biological_region 450304 450307 0.999 - . logic_name=eponine scaffold_43 . biological_region 455475 455479 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 449682 450437 . + . ID=Physo136181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430114;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 449682 450437 . + . ID=Physo136181;Parent=Physo136181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 449682 450437 . + 0 ID=Physo136181;Parent=Physo136181;rank=1 scaffold_43 . exon 449682 450437 . + . ID=Physo136181.1;Parent=Physo136181;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 453672 454382 . - . ID=Physo136182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430115;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 453672 454382 . - . ID=Physo136182;Parent=Physo136182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 453672 454382 . - 0 ID=Physo136182;Parent=Physo136182;rank=1 scaffold_43 . exon 453672 454382 . - . ID=Physo136182.1;Parent=Physo136182;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 457105 457890 . - . ID=Physo136183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430116;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 457105 457890 . - . ID=Physo136183;Parent=Physo136183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 457105 457416 . - 0 ID=Physo136183;Parent=Physo136183;rank=2 scaffold_43 . exon 457105 457416 . - . ID=Physo136183.2;Parent=Physo136183;constitutive=1;rank=2 scaffold_43 . CDS 457444 457890 . - 0 ID=Physo136183;Parent=Physo136183;rank=1 scaffold_43 . exon 457444 457890 . - . ID=Physo136183.1;Parent=Physo136183;constitutive=1;rank=1 scaffold_43 . repeat_region 461583 461592 . ? . description=dust scaffold_43 . repeat_region 463222 463279 . ? . description=dust scaffold_43 . repeat_region 463638 463699 . ? . description=dust scaffold_43 . repeat_region 466393 466416 . ? . description=dust scaffold_43 ensembl protein_coding_gene 460411 462317 . - . ID=Physo136184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430117;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 460411 462317 . - . ID=Physo136184;Parent=Physo136184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 460411 461228 . - 0 ID=Physo136184;Parent=Physo136184;rank=3 scaffold_43 . exon 460411 461228 . - . ID=Physo136184.3;Parent=Physo136184;constitutive=1;ensembl_phase=1;rank=3 scaffold_43 . CDS 461376 461498 . - 0 ID=Physo136184;Parent=Physo136184;rank=2 scaffold_43 . exon 461376 461498 . - . ID=Physo136184.2;Parent=Physo136184;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 461864 462317 . - 0 ID=Physo136184;Parent=Physo136184;rank=1 scaffold_43 . exon 461864 462317 . - . ID=Physo136184.1;Parent=Physo136184;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 ensembl protein_coding_gene 463063 465300 . + . ID=Physo136185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430118;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 463063 465300 . + . ID=Physo136185;Parent=Physo136185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 463063 465300 . + 0 ID=Physo136185;Parent=Physo136185;rank=1 scaffold_43 . exon 463063 465300 . + . ID=Physo136185.1;Parent=Physo136185;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 467646 475531 . - . ID=Physo136186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430119;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 467646 475531 . - . ID=Physo136186;Parent=Physo136186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 467646 468556 . - 0 ID=Physo136186;Parent=Physo136186;rank=7 scaffold_43 . exon 467646 468556 . - . ID=Physo136186.7;Parent=Physo136186;constitutive=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 468666 468700 . - 0 ID=Physo136186;Parent=Physo136186;rank=6 scaffold_43 . CDS 468879 469345 . - 0 ID=Physo136186;Parent=Physo136186;rank=5 scaffold_43 . CDS 469430 469520 . - 0 ID=Physo136186;Parent=Physo136186;rank=4 scaffold_43 . CDS 469914 470002 . - 0 ID=Physo136186;Parent=Physo136186;rank=3 scaffold_43 . CDS 470164 470182 . - 0 ID=Physo136186;Parent=Physo136186;rank=2 scaffold_43 . CDS 470307 475531 . - 0 ID=Physo136186;Parent=Physo136186;rank=1 scaffold_43 . repeat_region 467940 467975 . ? . description=trf scaffold_43 . repeat_region 467947 467981 . ? . description=trf scaffold_43 . biological_region 467961 467966 0.999 - . logic_name=eponine scaffold_43 . repeat_region 469196 469227 . ? . description=trf scaffold_43 . biological_region 469421 469427 0.999 + . logic_name=eponine scaffold_43 . biological_region 469596 469597 0.999 - . logic_name=eponine scaffold_43 . biological_region 470272 470273 0.999 + . logic_name=eponine scaffold_43 . repeat_region 470547 470648 . + . description=(CTG)n scaffold_43 . repeat_region 473404 473440 . ? . description=trf scaffold_43 . repeat_region 473510 473546 . ? . description=trf scaffold_43 . repeat_region 473520 473539 . ? . description=trf scaffold_43 . biological_region 474213 474216 0.999 + . logic_name=eponine scaffold_43 . biological_region 475040 475041 0.999 - . logic_name=eponine scaffold_43 . biological_region 475852 475855 0.999 + . logic_name=eponine scaffold_43 . biological_region 476342 476343 0.999 + . logic_name=eponine scaffold_43 . repeat_region 476886 476952 . ? . description=trf scaffold_43 . repeat_region 477252 477314 . ? . description=trf scaffold_43 ensembl protein_coding_gene 476861 477549 . + . ID=Physo108927;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_430007;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 476861 477549 . + . ID=Physo108927;Parent=Physo108927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 476861 477549 . + . ID=Physo108927.1;Parent=Physo108927;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 476879 477466 . + 0 ID=Physo108927;Parent=Physo108927;rank=1 scaffold_43 . exon 468666 468700 . - . ID=Physo136186.6;Parent=Physo136186;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_43 . exon 468879 469345 . - . ID=Physo136186.5;Parent=Physo136186;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_43 . exon 469430 469520 . - . ID=Physo136186.4;Parent=Physo136186;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . exon 469914 470002 . - . ID=Physo136186.3;Parent=Physo136186;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_43 . exon 470164 470182 . - . ID=Physo136186.2;Parent=Physo136186;constitutive=1;ensembl_phase=2;rank=2 scaffold_43 . exon 470307 475531 . - . ID=Physo136186.1;Parent=Physo136186;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 ensembl protein_coding_gene 475846 476681 . + . ID=Physo136187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430120;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 475846 476681 . + . ID=Physo136187;Parent=Physo136187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . exon 475846 476145 . + . ID=Physo136187.1;Parent=Physo136187;constitutive=1;ensembl_phase=-1;rank=1 scaffold_43 . CDS 475873 476145 . + 0 ID=Physo136187;Parent=Physo136187;rank=1 scaffold_43 . CDS 476230 476439 . + 0 ID=Physo136187;Parent=Physo136187;rank=2 scaffold_43 . exon 476230 476681 . + . ID=Physo136187.2;Parent=Physo136187;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_43 . repeat_region 482419 482426 . ? . description=dust scaffold_43 ensembl protein_coding_gene 477711 478859 . + . ID=Physo136189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430122;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 477711 478859 . + . ID=Physo136189;Parent=Physo136189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 477711 478859 . + 0 ID=Physo136189;Parent=Physo136189;rank=1 scaffold_43 . exon 477711 478859 . + . ID=Physo136189.1;Parent=Physo136189;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 479450 482257 . + . ID=Physo136190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430123;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 479450 482257 . + . ID=Physo136190;Parent=Physo136190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 479450 479735 . + 0 ID=Physo136190;Parent=Physo136190;rank=1 scaffold_43 . exon 479450 479735 . + . ID=Physo136190.1;Parent=Physo136190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 479795 479831 . + 0 ID=Physo136190;Parent=Physo136190;rank=2 scaffold_43 . exon 479795 479831 . + . ID=Physo136190.2;Parent=Physo136190;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_43 . CDS 479899 482257 . + 0 ID=Physo136190;Parent=Physo136190;rank=3 scaffold_43 . exon 479899 482257 . + . ID=Physo136190.3;Parent=Physo136190;constitutive=1;ensembl_phase=2;rank=3 scaffold_43 ensembl protein_coding_gene 482803 483252 . - . ID=Physo136191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430124;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 482803 483252 . - . ID=Physo136191;Parent=Physo136191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 482803 483252 . - 0 ID=Physo136191;Parent=Physo136191;rank=1 scaffold_43 . exon 482803 483252 . - . ID=Physo136191.1;Parent=Physo136191;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 487367 487926 . - . ID=Physo136192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430125;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 487367 487926 . - . ID=Physo136192;Parent=Physo136192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 487367 487867 . - 0 ID=Physo136192;Parent=Physo136192;rank=2 scaffold_43 . exon 487367 487867 . - . ID=Physo136192.2;Parent=Physo136192;constitutive=1;rank=2 scaffold_43 . CDS 487906 487926 . - 0 ID=Physo136192;Parent=Physo136192;rank=1 scaffold_43 . biological_region 492778 492780 0.999 + . logic_name=eponine scaffold_43 . biological_region 494291 494298 0.999 - . logic_name=eponine scaffold_43 . biological_region 496229 496233 0.999 + . logic_name=eponine scaffold_43 . exon 487906 487926 . - . ID=Physo136192.1;Parent=Physo136192;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 490099 490599 . - . ID=Physo136193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430126;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 490099 490599 . - . ID=Physo136193;Parent=Physo136193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 490099 490599 . - 0 ID=Physo136193;Parent=Physo136193;rank=1 scaffold_43 . exon 490099 490599 . - . ID=Physo136193.1;Parent=Physo136193;constitutive=1;rank=1 scaffold_43 . repeat_region 498484 498492 . ? . description=dust scaffold_43 . repeat_region 498579 498588 . ? . description=dust scaffold_43 . repeat_region 500482 500616 . - . description=GypsyPi-1c_I-int scaffold_43 . repeat_region 501088 503542 . - . description=GypsyPi-1c_I-int scaffold_43 . repeat_region 501615 501723 . ? . description=trf scaffold_43 . repeat_region 503893 504153 . ? . description=trf scaffold_43 . repeat_region 504284 504817 . - . description=GypsyPi-1c_I-int scaffold_43 ensembl protein_coding_gene 499419 501107 . + . ID=Physo136194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430127;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 499419 501107 . + . ID=Physo136194;Parent=Physo136194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 499419 500499 . + 0 ID=Physo136194;Parent=Physo136194;rank=1 scaffold_43 . exon 499419 500499 . + . ID=Physo136194.1;Parent=Physo136194;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 500734 501107 . + 0 ID=Physo136194;Parent=Physo136194;rank=2 scaffold_43 . exon 500734 501107 . + . ID=Physo136194.2;Parent=Physo136194;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 ensembl protein_coding_gene 501594 504592 . - . ID=Physo136195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430128;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 501594 504592 . - . ID=Physo136195;Parent=Physo136195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 501594 501820 . - 0 ID=Physo136195;Parent=Physo136195;rank=7 scaffold_43 . exon 501594 501820 . - . ID=Physo136195.7;Parent=Physo136195;constitutive=1;ensembl_phase=1;rank=7 scaffold_43 . CDS 502183 502496 . - 0 ID=Physo136195;Parent=Physo136195;rank=6 scaffold_43 . exon 502183 502496 . - . ID=Physo136195.6;Parent=Physo136195;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_43 . CDS 502659 503203 . - 0 ID=Physo136195;Parent=Physo136195;rank=5 scaffold_43 . exon 502659 503203 . - . ID=Physo136195.5;Parent=Physo136195;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_43 . CDS 503437 503503 . - 0 ID=Physo136195;Parent=Physo136195;rank=4 scaffold_43 . exon 503437 503503 . - . ID=Physo136195.4;Parent=Physo136195;constitutive=1;ensembl_phase=2;rank=4 scaffold_43 . CDS 503548 504088 . - 0 ID=Physo136195;Parent=Physo136195;rank=3 scaffold_43 . exon 503548 504088 . - . ID=Physo136195.3;Parent=Physo136195;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_43 . CDS 504158 504285 . - 0 ID=Physo136195;Parent=Physo136195;rank=2 scaffold_43 . exon 504158 504285 . - . ID=Physo136195.2;Parent=Physo136195;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_43 . CDS 504471 504592 . - 0 ID=Physo136195;Parent=Physo136195;rank=1 scaffold_43 . exon 504471 504592 . - . ID=Physo136195.1;Parent=Physo136195;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . biological_region 513434 513436 0.999 - . logic_name=eponine scaffold_43 ensembl protein_coding_gene 507986 508417 . - . ID=Physo136196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430129;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 507986 508417 . - . ID=Physo136196;Parent=Physo136196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 507986 508180 . - 0 ID=Physo136196;Parent=Physo136196;rank=2 scaffold_43 . exon 507986 508180 . - . ID=Physo136196.2;Parent=Physo136196;constitutive=1;rank=2 scaffold_43 . CDS 508250 508417 . - 0 ID=Physo136196;Parent=Physo136196;rank=1 scaffold_43 . exon 508250 508417 . - . ID=Physo136196.1;Parent=Physo136196;constitutive=1;rank=1 scaffold_43 ensembl protein_coding_gene 515478 515924 . - . ID=Physo136197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430130;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 515478 515924 . - . ID=Physo136197;Parent=Physo136197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 515478 515672 . - 0 ID=Physo136197;Parent=Physo136197;rank=2 scaffold_43 . exon 515478 515672 . - . ID=Physo136197.2;Parent=Physo136197;constitutive=1;rank=2 scaffold_43 . CDS 515757 515924 . - 0 ID=Physo136197;Parent=Physo136197;rank=1 scaffold_43 . exon 515757 515924 . - . ID=Physo136197.1;Parent=Physo136197;constitutive=1;rank=1 scaffold_43 . repeat_region 523131 523204 . ? . description=trf scaffold_43 . repeat_region 523146 523202 . ? . description=trf scaffold_43 . repeat_region 523146 523215 . ? . description=trf scaffold_43 . repeat_region 523162 523215 . ? . description=trf scaffold_43 . repeat_region 525678 526137 . - . description=GypsyPi-1c_I-int scaffold_43 ensembl protein_coding_gene 520436 522215 . + . ID=Physo136198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430131;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 520436 522215 . + . ID=Physo136198;Parent=Physo136198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 520436 520785 . + 0 ID=Physo136198;Parent=Physo136198;rank=1 scaffold_43 . exon 520436 520785 . + . ID=Physo136198.1;Parent=Physo136198;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_43 . CDS 520861 521367 . + 0 ID=Physo136198;Parent=Physo136198;rank=2 scaffold_43 . exon 520861 521367 . + . ID=Physo136198.2;Parent=Physo136198;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_43 . CDS 521448 521740 . + 0 ID=Physo136198;Parent=Physo136198;rank=3 scaffold_43 . exon 521448 521740 . + . ID=Physo136198.3;Parent=Physo136198;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_43 . CDS 521812 521858 . + 0 ID=Physo136198;Parent=Physo136198;rank=4 scaffold_43 . exon 521812 521858 . + . ID=Physo136198.4;Parent=Physo136198;constitutive=1;ensembl_phase=1;rank=4 scaffold_43 . CDS 521880 522215 . + 0 ID=Physo136198;Parent=Physo136198;rank=5 scaffold_43 . exon 521880 522215 . + . ID=Physo136198.5;Parent=Physo136198;constitutive=1;rank=5 scaffold_43 . biological_region 527859 527860 0.999 + . logic_name=eponine scaffold_43 . biological_region 527928 527929 0.999 + . logic_name=eponine scaffold_43 . biological_region 528039 528044 0.999 - . logic_name=eponine scaffold_43 . biological_region 528057 528062 0.999 - . logic_name=eponine scaffold_43 . biological_region 528247 528247 0.999 + . logic_name=eponine scaffold_43 . biological_region 530346 530349 0.999 + . logic_name=eponine scaffold_43 . biological_region 531078 531079 0.999 + . logic_name=eponine scaffold_43 . biological_region 531097 531099 0.999 + . logic_name=eponine scaffold_43 . biological_region 531172 531172 0.999 - . logic_name=eponine scaffold_43 . biological_region 531228 531231 0.999 + . logic_name=eponine scaffold_43 . repeat_region 533204 535782 . ? . description=dust scaffold_43 ensembl protein_coding_gene 527851 530559 . + . ID=Physo136199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_430132;logic_name=jgi_physo1_1 scaffold_43 ensembl transcript 527851 530559 . + . ID=Physo136199;Parent=Physo136199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_43 . CDS 527851 528178 . + 0 ID=Physo136199;Parent=Physo136199;rank=1 scaffold_43 . exon 527851 528178 . + . ID=Physo136199.1;Parent=Physo136199;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_43 . CDS 528354 528652 . + 0 ID=Physo136199;Parent=Physo136199;rank=2 scaffold_43 . exon 528354 528652 . + . ID=Physo136199.2;Parent=Physo136199;constitutive=1;ensembl_phase=1;rank=2 scaffold_43 . CDS 528672 529316 . + 0 ID=Physo136199;Parent=Physo136199;rank=3 scaffold_43 . exon 528672 529316 . + . ID=Physo136199.3;Parent=Physo136199;constitutive=1;rank=3 scaffold_43 . CDS 529444 530559 . + 0 ID=Physo136199;Parent=Physo136199;rank=4 scaffold_43 . exon 529444 530559 . + . ID=Physo136199.4;Parent=Physo136199;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_42 1 550099 scaffold_42 . repeat_region 1 447 . ? . description=dust scaffold_42 . repeat_region 2 447 . ? . description=trf scaffold_42 . repeat_region 1030 2120 . ? . description=dust scaffold_42 . repeat_region 2324 2332 . ? . description=dust scaffold_42 . biological_region 4130 4134 0.999 + . logic_name=eponine scaffold_42 . biological_region 4252 4256 0.999 - . logic_name=eponine scaffold_42 . repeat_region 4728 4844 . ? . description=trf scaffold_42 . biological_region 4755 4755 0.999 - . logic_name=eponine scaffold_42 . biological_region 5004 5008 0.999 + . logic_name=eponine scaffold_42 . biological_region 5793 5794 0.999 + . logic_name=eponine scaffold_42 . repeat_region 6888 6914 . ? . description=trf scaffold_42 . biological_region 6919 6921 0.999 + . logic_name=eponine scaffold_42 . biological_region 6936 6939 0.999 - . logic_name=eponine scaffold_42 . biological_region 7502 7505 0.999 + . logic_name=eponine scaffold_42 . biological_region 7584 7585 0.999 - . logic_name=eponine scaffold_42 . biological_region 7634 7639 0.999 - . logic_name=eponine scaffold_42 . biological_region 7803 7803 0.999 - . logic_name=eponine scaffold_42 . biological_region 7859 7860 0.999 + . logic_name=eponine scaffold_42 . repeat_region 8277 8295 . ? . description=dust scaffold_42 . repeat_region 8277 8300 . ? . description=trf scaffold_42 . repeat_region 8814 8930 . ? . description=trf scaffold_42 . biological_region 8904 8904 0.999 + . logic_name=eponine scaffold_42 . repeat_region 9361 9394 . ? . description=trf scaffold_42 . biological_region 9445 9450 0.999 + . logic_name=eponine scaffold_42 . biological_region 9493 9496 0.999 - . logic_name=eponine scaffold_42 . biological_region 9569 9571 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 13610 15338 . - . ID=Physo135938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420001;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 13610 15338 . - . ID=Physo135938;Parent=Physo135938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 13610 15187 . - 0 ID=Physo135938;Parent=Physo135938;rank=2 scaffold_42 . exon 13610 15187 . - . ID=Physo135938.2;Parent=Physo135938;constitutive=1;rank=2 scaffold_42 . CDS 15267 15338 . - 0 ID=Physo135938;Parent=Physo135938;rank=1 scaffold_42 . exon 15267 15338 . - . ID=Physo135938.1;Parent=Physo135938;constitutive=1;rank=1 scaffold_42 . biological_region 20170 20180 0.999 + . logic_name=eponine scaffold_42 . biological_region 20620 20622 0.999 + . logic_name=eponine scaffold_42 . repeat_region 21396 21403 . ? . description=dust scaffold_42 . repeat_region 23421 23491 . ? . description=dust scaffold_42 . repeat_region 23421 23491 . ? . description=trf scaffold_42 . biological_region 26753 26756 0.999 - . logic_name=eponine scaffold_42 . biological_region 26810 26812 0.999 + . logic_name=eponine scaffold_42 . repeat_region 29203 29221 . ? . description=dust scaffold_42 . biological_region 29368 29371 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 28139 29371 . - . ID=Physo135939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420002;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 28139 29371 . - . ID=Physo135939;Parent=Physo135939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 28139 28365 . - 0 ID=Physo135939;Parent=Physo135939;rank=5 scaffold_42 . exon 28139 28365 . - . ID=Physo135939.5;Parent=Physo135939;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 . CDS 28456 28684 . - 0 ID=Physo135939;Parent=Physo135939;rank=4 scaffold_42 . exon 28456 28684 . - . ID=Physo135939.4;Parent=Physo135939;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_42 . CDS 28843 28944 . - 0 ID=Physo135939;Parent=Physo135939;rank=3 scaffold_42 . exon 28843 28944 . - . ID=Physo135939.3;Parent=Physo135939;constitutive=1;rank=3 scaffold_42 . CDS 29021 29182 . - 0 ID=Physo135939;Parent=Physo135939;rank=2 scaffold_42 . exon 29021 29182 . - . ID=Physo135939.2;Parent=Physo135939;constitutive=1;rank=2 scaffold_42 . CDS 29291 29371 . - 0 ID=Physo135939;Parent=Physo135939;rank=1 scaffold_42 . exon 29291 29371 . - . ID=Physo135939.1;Parent=Physo135939;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 36660 38021 . - . ID=Physo135940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420003;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 36660 38021 . - . ID=Physo135940;Parent=Physo135940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 36660 38021 . - 0 ID=Physo135940;Parent=Physo135940;rank=1 scaffold_42 . exon 36660 38021 . - . ID=Physo135940.1;Parent=Physo135940;constitutive=1;rank=1 scaffold_42 . repeat_region 41175 41183 . ? . description=dust scaffold_42 . biological_region 43706 43707 0.999 - . logic_name=eponine scaffold_42 . biological_region 45084 45085 0.999 - . logic_name=eponine scaffold_42 . biological_region 46126 46130 0.999 + . logic_name=eponine scaffold_42 . repeat_region 46285 46325 . ? . description=trf scaffold_42 . repeat_region 46923 46970 . ? . description=trf scaffold_42 . repeat_region 46955 47027 . ? . description=trf scaffold_42 . biological_region 47495 47495 0.999 + . logic_name=eponine scaffold_42 . biological_region 47514 47517 0.999 + . logic_name=eponine scaffold_42 . biological_region 47635 47635 0.999 - . logic_name=eponine scaffold_42 . biological_region 47920 47922 0.999 - . logic_name=eponine scaffold_42 . biological_region 48710 48712 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 42911 45069 . - . ID=Physo108907;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420001;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 42911 45069 . - . ID=Physo108907;Parent=Physo108907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 42911 45022 . - 0 ID=Physo108907;Parent=Physo108907;rank=1 scaffold_42 . exon 42911 45069 . - . ID=Physo108907.1;Parent=Physo108907;constitutive=1;ensembl_phase=-1;rank=1 scaffold_42 ensembl protein_coding_gene 46913 47936 . - . ID=Physo108908;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420002;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 46913 47936 . - . ID=Physo108908;Parent=Physo108908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 46913 47116 . - . ID=Physo108908.3;Parent=Physo108908;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_42 . CDS 46914 47116 . - 0 ID=Physo108908;Parent=Physo108908;rank=3 scaffold_42 . CDS 47180 47229 . - 0 ID=Physo108908;Parent=Physo108908;rank=2 scaffold_42 . exon 47180 47229 . - . ID=Physo108908.2;Parent=Physo108908;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 47430 47935 . - 0 ID=Physo108908;Parent=Physo108908;rank=1 scaffold_42 . exon 47430 47936 . - . ID=Physo108908.1;Parent=Physo108908;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_42 ensembl protein_coding_gene 46263 46627 . + . ID=Physo117383;biotype=protein_coding;external_name=estExt_Genewise1.C_420019;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 46263 46627 . + . ID=Physo117383;Parent=Physo117383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 46263 46481 . + . ID=Physo117383.1;Parent=Physo117383;constitutive=1;ensembl_phase=-1;rank=1 scaffold_42 . CDS 46266 46481 . + 0 ID=Physo117383;Parent=Physo117383;rank=1 scaffold_42 . CDS 46553 46627 . + 0 ID=Physo117383;Parent=Physo117383;rank=2 scaffold_42 . exon 46553 46627 . + . ID=Physo117383.2;Parent=Physo117383;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 41456 42738 . + . ID=Physo135941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420004;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 41456 42738 . + . ID=Physo135941;Parent=Physo135941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 41456 41620 . + . ID=Physo135941.1;Parent=Physo135941;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_42 . CDS 41523 41620 . + 0 ID=Physo135941;Parent=Physo135941;rank=1 scaffold_42 . CDS 41691 42084 . + 0 ID=Physo135941;Parent=Physo135941;rank=2 scaffold_42 . exon 41691 42084 . + . ID=Physo135941.2;Parent=Physo135941;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 42166 42252 . + 0 ID=Physo135941;Parent=Physo135941;rank=3 scaffold_42 . exon 42166 42252 . + . ID=Physo135941.3;Parent=Physo135941;constitutive=1;rank=3 scaffold_42 . CDS 42322 42738 . + 0 ID=Physo135941;Parent=Physo135941;rank=4 scaffold_42 . exon 42322 42738 . + . ID=Physo135941.4;Parent=Physo135941;constitutive=1;rank=4 scaffold_42 ensembl protein_coding_gene 48086 48661 . + . ID=Physo135945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420008;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 48086 48661 . + . ID=Physo135945;Parent=Physo135945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 48086 48661 . + 0 ID=Physo135945;Parent=Physo135945;rank=1 scaffold_42 . exon 48086 48661 . + . ID=Physo135945.1;Parent=Physo135945;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 54144 54578 . - . ID=Physo108909;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420003;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 54144 54578 . - . ID=Physo108909;Parent=Physo108909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 54144 54578 . - 0 ID=Physo108909;Parent=Physo108909;rank=1 scaffold_42 . exon 54144 54578 . - . ID=Physo108909.1;Parent=Physo108909;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 49340 50049 . - . ID=Physo135946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420009;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 49340 50049 . - . ID=Physo135946;Parent=Physo135946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 49340 49612 . - 0 ID=Physo135946;Parent=Physo135946;rank=3 scaffold_42 . exon 49340 49612 . - . ID=Physo135946.3;Parent=Physo135946;constitutive=1;rank=3 scaffold_42 . CDS 49708 49799 . - 0 ID=Physo135946;Parent=Physo135946;rank=2 scaffold_42 . exon 49708 49799 . - . ID=Physo135946.2;Parent=Physo135946;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 49899 50049 . - 0 ID=Physo135946;Parent=Physo135946;rank=1 scaffold_42 . exon 49899 50049 . - . ID=Physo135946.1;Parent=Physo135946;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 50327 51133 . - . ID=Physo135947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420010;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 50327 51133 . - . ID=Physo135947;Parent=Physo135947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 50327 51133 . - 0 ID=Physo135947;Parent=Physo135947;rank=1 scaffold_42 . exon 50327 51133 . - . ID=Physo135947.1;Parent=Physo135947;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 51520 53670 . + . ID=Physo135948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420011;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 51520 53670 . + . ID=Physo135948;Parent=Physo135948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 51520 53670 . + 0 ID=Physo135948;Parent=Physo135948;rank=1 scaffold_42 . exon 51520 53670 . + . ID=Physo135948.1;Parent=Physo135948;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 54910 55500 . - . ID=Physo135950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420013;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 54910 55500 . - . ID=Physo135950;Parent=Physo135950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 54910 55500 . - 0 ID=Physo135950;Parent=Physo135950;rank=1 scaffold_42 . exon 54910 55500 . - . ID=Physo135950.1;Parent=Physo135950;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 58193 60770 . - . ID=Physo135951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420014;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 58193 60770 . - . ID=Physo135951;Parent=Physo135951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 58193 58222 . - 0 ID=Physo135951;Parent=Physo135951;rank=3 scaffold_42 . exon 58193 58222 . - . ID=Physo135951.3;Parent=Physo135951;constitutive=1;rank=3 scaffold_42 . CDS 58384 60537 . - 0 ID=Physo135951;Parent=Physo135951;rank=2 scaffold_42 . exon 58384 60537 . - . ID=Physo135951.2;Parent=Physo135951;constitutive=1;rank=2 scaffold_42 . CDS 60636 60770 . - 0 ID=Physo135951;Parent=Physo135951;rank=1 scaffold_42 . biological_region 60680 60682 0.999 + . logic_name=eponine scaffold_42 . biological_region 60787 60793 0.999 - . logic_name=eponine scaffold_42 . repeat_region 61785 61831 . ? . description=trf scaffold_42 . biological_region 62000 62001 0.999 - . logic_name=eponine scaffold_42 . biological_region 64540 64544 0.999 - . logic_name=eponine scaffold_42 . biological_region 64596 64600 0.999 + . logic_name=eponine scaffold_42 . biological_region 65627 65628 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 64972 67257 . + . ID=Physo117395;biotype=protein_coding;external_name=estExt_Genewise1.C_420031;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 64972 67257 . + . ID=Physo117395;Parent=Physo117395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 64972 65074 . + 0 ID=Physo117395;Parent=Physo117395;rank=1 scaffold_42 . exon 64972 65074 . + . ID=Physo117395.1;Parent=Physo117395;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 65159 65202 . + 0 ID=Physo117395;Parent=Physo117395;rank=2 scaffold_42 . exon 65159 65202 . + . ID=Physo117395.2;Parent=Physo117395;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 65273 65347 . + 0 ID=Physo117395;Parent=Physo117395;rank=3 scaffold_42 . exon 65273 65347 . + . ID=Physo117395.3;Parent=Physo117395;constitutive=1;rank=3 scaffold_42 . CDS 65430 65630 . + 0 ID=Physo117395;Parent=Physo117395;rank=4 scaffold_42 . exon 65430 65630 . + . ID=Physo117395.4;Parent=Physo117395;constitutive=1;rank=4 scaffold_42 . CDS 65706 65865 . + 0 ID=Physo117395;Parent=Physo117395;rank=5 scaffold_42 . exon 65706 65865 . + . ID=Physo117395.5;Parent=Physo117395;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_42 . CDS 65926 65982 . + 0 ID=Physo117395;Parent=Physo117395;rank=6 scaffold_42 . exon 65926 65982 . + . ID=Physo117395.6;Parent=Physo117395;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_42 . CDS 66069 66610 . + 0 ID=Physo117395;Parent=Physo117395;rank=7 scaffold_42 . exon 66069 66610 . + . ID=Physo117395.7;Parent=Physo117395;constitutive=1;ensembl_phase=1;rank=7 scaffold_42 . CDS 66691 67257 . + 0 ID=Physo117395;Parent=Physo117395;rank=8 scaffold_42 . exon 66691 67257 . + . ID=Physo117395.8;Parent=Physo117395;constitutive=1;rank=8 scaffold_42 . exon 60636 60770 . - . ID=Physo135951.1;Parent=Physo135951;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 61757 63522 . + . ID=Physo135952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420015;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 61757 63522 . + . ID=Physo135952;Parent=Physo135952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 61757 63439 . + 0 ID=Physo135952;Parent=Physo135952;rank=1 scaffold_42 . exon 61757 63522 . + . ID=Physo135952.1;Parent=Physo135952;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_42 ensembl protein_coding_gene 63623 64822 . - . ID=Physo135953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420016;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 63623 64822 . - . ID=Physo135953;Parent=Physo135953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 63623 64822 . - 0 ID=Physo135953;Parent=Physo135953;rank=1 scaffold_42 . exon 63623 64822 . - . ID=Physo135953.1;Parent=Physo135953;constitutive=1;rank=1 scaffold_42 . repeat_region 73868 73875 . ? . description=dust scaffold_42 ensembl protein_coding_gene 69187 69804 . + . ID=Physo135955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420018;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 69187 69804 . + . ID=Physo135955;Parent=Physo135955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 69187 69804 . + 0 ID=Physo135955;Parent=Physo135955;rank=1 scaffold_42 . exon 69187 69804 . + . ID=Physo135955.1;Parent=Physo135955;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 69932 70900 . - . ID=Physo135956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420019;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 69932 70900 . - . ID=Physo135956;Parent=Physo135956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 69932 70900 . - 0 ID=Physo135956;Parent=Physo135956;rank=1 scaffold_42 . exon 69932 70900 . - . ID=Physo135956.1;Parent=Physo135956;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 72618 73058 . - . ID=Physo135957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420020;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 72618 73058 . - . ID=Physo135957;Parent=Physo135957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 72618 73058 . - 0 ID=Physo135957;Parent=Physo135957;rank=1 scaffold_42 . exon 72618 73058 . - . ID=Physo135957.1;Parent=Physo135957;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 77392 79495 . - . ID=Physo135958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420021;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 77392 79495 . - . ID=Physo135958;Parent=Physo135958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 77392 77604 . - 0 ID=Physo135958;Parent=Physo135958;rank=5 scaffold_42 . exon 77392 77604 . - . ID=Physo135958.5;Parent=Physo135958;constitutive=1;rank=5 scaffold_42 . CDS 77667 78014 . - 0 ID=Physo135958;Parent=Physo135958;rank=4 scaffold_42 . exon 77667 78014 . - . ID=Physo135958.4;Parent=Physo135958;constitutive=1;rank=4 scaffold_42 . CDS 78062 78840 . - 0 ID=Physo135958;Parent=Physo135958;rank=3 scaffold_42 . exon 78062 78840 . - . ID=Physo135958.3;Parent=Physo135958;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 78866 78906 . - 0 ID=Physo135958;Parent=Physo135958;rank=2 scaffold_42 . CDS 79269 79495 . - 0 ID=Physo135958;Parent=Physo135958;rank=1 scaffold_42 . biological_region 79163 79167 0.999 - . logic_name=eponine scaffold_42 . biological_region 81305 81309 0.999 + . logic_name=eponine scaffold_42 . repeat_region 81529 81609 . ? . description=trf scaffold_42 . repeat_region 81585 81695 . ? . description=trf scaffold_42 . repeat_region 81628 81808 . ? . description=trf scaffold_42 . repeat_region 81753 81848 . ? . description=trf scaffold_42 . repeat_region 81821 81916 . ? . description=trf scaffold_42 . repeat_region 81822 82758 . ? . description=trf scaffold_42 . repeat_region 81856 81950 . ? . description=trf scaffold_42 . repeat_region 81862 82734 . ? . description=trf scaffold_42 . biological_region 82018 82024 0.999 + . logic_name=eponine scaffold_42 . biological_region 82197 82205 0.999 + . logic_name=eponine scaffold_42 . biological_region 82371 82378 0.999 + . logic_name=eponine scaffold_42 . biological_region 82549 82556 0.999 + . logic_name=eponine scaffold_42 . biological_region 87015 87019 0.999 + . logic_name=eponine scaffold_42 . repeat_region 87239 87319 . ? . description=trf scaffold_42 . repeat_region 87240 87319 . ? . description=trf scaffold_42 . repeat_region 87295 87405 . ? . description=trf scaffold_42 . repeat_region 87420 87463 . ? . description=trf scaffold_42 . repeat_region 87489 88443 . ? . description=trf scaffold_42 . repeat_region 87526 87631 . ? . description=trf scaffold_42 . biological_region 87546 87551 0.999 + . logic_name=eponine scaffold_42 . repeat_region 87561 87655 . ? . description=trf scaffold_42 . biological_region 87724 87731 0.999 + . logic_name=eponine scaffold_42 . biological_region 87902 87909 0.999 + . logic_name=eponine scaffold_42 . biological_region 88080 88087 0.999 + . logic_name=eponine scaffold_42 . biological_region 88258 88265 0.999 + . logic_name=eponine scaffold_42 . exon 78866 78906 . - . ID=Physo135958.2;Parent=Physo135958;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . exon 79269 79495 . - . ID=Physo135958.1;Parent=Physo135958;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 81104 82660 . - . ID=Physo135959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420022;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 81104 82660 . - . ID=Physo135959;Parent=Physo135959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 81104 81118 . - 0 ID=Physo135959;Parent=Physo135959;rank=5 scaffold_42 . exon 81104 81118 . - . ID=Physo135959.5;Parent=Physo135959;constitutive=1;rank=5 scaffold_42 . CDS 81488 81814 . - 0 ID=Physo135959;Parent=Physo135959;rank=4 scaffold_42 . exon 81488 81814 . - . ID=Physo135959.4;Parent=Physo135959;constitutive=1;rank=4 scaffold_42 . CDS 81972 82139 . - 0 ID=Physo135959;Parent=Physo135959;rank=3 scaffold_42 . exon 81972 82139 . - . ID=Physo135959.3;Parent=Physo135959;constitutive=1;rank=3 scaffold_42 . CDS 82324 82410 . - 0 ID=Physo135959;Parent=Physo135959;rank=2 scaffold_42 . exon 82324 82410 . - . ID=Physo135959.2;Parent=Physo135959;constitutive=1;rank=2 scaffold_42 . CDS 82502 82660 . - 0 ID=Physo135959;Parent=Physo135959;rank=1 scaffold_42 . exon 82502 82660 . - . ID=Physo135959.1;Parent=Physo135959;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 86814 88466 . - . ID=Physo135960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420023;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 86814 88466 . - . ID=Physo135960;Parent=Physo135960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 86814 86828 . - 0 ID=Physo135960;Parent=Physo135960;rank=5 scaffold_42 . exon 86814 86828 . - . ID=Physo135960.5;Parent=Physo135960;constitutive=1;rank=5 scaffold_42 . CDS 87198 87311 . - 0 ID=Physo135960;Parent=Physo135960;rank=4 scaffold_42 . exon 87198 87311 . - . ID=Physo135960.4;Parent=Physo135960;constitutive=1;rank=4 scaffold_42 . CDS 87677 87941 . - 0 ID=Physo135960;Parent=Physo135960;rank=3 scaffold_42 . exon 87677 87941 . - . ID=Physo135960.3;Parent=Physo135960;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 87980 88297 . - 0 ID=Physo135960;Parent=Physo135960;rank=2 scaffold_42 . exon 87980 88297 . - . ID=Physo135960.2;Parent=Physo135960;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_42 . CDS 88336 88466 . - 0 ID=Physo135960;Parent=Physo135960;rank=1 scaffold_42 . exon 88336 88466 . - . ID=Physo135960.1;Parent=Physo135960;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . repeat_region 97102 97120 . ? . description=dust scaffold_42 ensembl protein_coding_gene 89603 90186 . + . ID=Physo135961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420024;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 89603 90186 . + . ID=Physo135961;Parent=Physo135961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 89603 89680 . + 0 ID=Physo135961;Parent=Physo135961;rank=1 scaffold_42 . exon 89603 89680 . + . ID=Physo135961.1;Parent=Physo135961;constitutive=1;rank=1 scaffold_42 . CDS 89770 90186 . + 0 ID=Physo135961;Parent=Physo135961;rank=2 scaffold_42 . exon 89770 90186 . + . ID=Physo135961.2;Parent=Physo135961;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 91924 101755 . + . ID=Physo135962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420025;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 91924 101755 . + . ID=Physo135962;Parent=Physo135962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 91924 92538 . + 0 ID=Physo135962;Parent=Physo135962;rank=1 scaffold_42 . exon 91924 92538 . + . ID=Physo135962.1;Parent=Physo135962;constitutive=1;rank=1 scaffold_42 . CDS 92571 93037 . + 0 ID=Physo135962;Parent=Physo135962;rank=2 scaffold_42 . exon 92571 93037 . + . ID=Physo135962.2;Parent=Physo135962;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 93083 95850 . + 0 ID=Physo135962;Parent=Physo135962;rank=3 scaffold_42 . exon 93083 95850 . + . ID=Physo135962.3;Parent=Physo135962;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 96165 98110 . + 0 ID=Physo135962;Parent=Physo135962;rank=4 scaffold_42 . exon 96165 98110 . + . ID=Physo135962.4;Parent=Physo135962;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 98170 98271 . + 0 ID=Physo135962;Parent=Physo135962;rank=5 scaffold_42 . exon 98170 98271 . + . ID=Physo135962.5;Parent=Physo135962;constitutive=1;rank=5 scaffold_42 . CDS 98316 100283 . + 0 ID=Physo135962;Parent=Physo135962;rank=6 scaffold_42 . CDS 100470 100815 . + 0 ID=Physo135962;Parent=Physo135962;rank=7 scaffold_42 . CDS 100835 100894 . + 0 ID=Physo135962;Parent=Physo135962;rank=8 scaffold_42 . CDS 100935 101755 . + 0 ID=Physo135962;Parent=Physo135962;rank=9 scaffold_42 . biological_region 107679 107682 0.999 - . logic_name=eponine scaffold_42 . biological_region 108001 108003 0.999 + . logic_name=eponine scaffold_42 . exon 98316 100283 . + . ID=Physo135962.6;Parent=Physo135962;constitutive=1;rank=6 scaffold_42 . exon 100470 100815 . + . ID=Physo135962.7;Parent=Physo135962;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_42 . exon 100835 100894 . + . ID=Physo135962.8;Parent=Physo135962;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_42 . exon 100935 101755 . + . ID=Physo135962.9;Parent=Physo135962;constitutive=1;ensembl_phase=1;rank=9 scaffold_42 ensembl protein_coding_gene 101989 103179 . - . ID=Physo135963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420026;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 101989 103179 . - . ID=Physo135963;Parent=Physo135963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 101989 103179 . - 0 ID=Physo135963;Parent=Physo135963;rank=1 scaffold_42 . exon 101989 103179 . - . ID=Physo135963.1;Parent=Physo135963;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 103565 104880 . + . ID=Physo135964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420027;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 103565 104880 . + . ID=Physo135964;Parent=Physo135964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 103565 103940 . + 0 ID=Physo135964;Parent=Physo135964;rank=1 scaffold_42 . exon 103565 103940 . + . ID=Physo135964.1;Parent=Physo135964;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 103960 104019 . + 0 ID=Physo135964;Parent=Physo135964;rank=2 scaffold_42 . exon 103960 104019 . + . ID=Physo135964.2;Parent=Physo135964;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 104060 104880 . + 0 ID=Physo135964;Parent=Physo135964;rank=3 scaffold_42 . exon 104060 104880 . + . ID=Physo135964.3;Parent=Physo135964;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 ensembl protein_coding_gene 105114 108681 . - . ID=Physo135965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420028;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 105114 108681 . - . ID=Physo135965;Parent=Physo135965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 105114 106706 . - 0 ID=Physo135965;Parent=Physo135965;rank=6 scaffold_42 . exon 105114 106706 . - . ID=Physo135965.6;Parent=Physo135965;constitutive=1;rank=6 scaffold_42 . CDS 106833 107180 . - 0 ID=Physo135965;Parent=Physo135965;rank=5 scaffold_42 . exon 106833 107180 . - . ID=Physo135965.5;Parent=Physo135965;constitutive=1;rank=5 scaffold_42 . CDS 107230 107692 . - 0 ID=Physo135965;Parent=Physo135965;rank=4 scaffold_42 . exon 107230 107692 . - . ID=Physo135965.4;Parent=Physo135965;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 107785 107863 . - 0 ID=Physo135965;Parent=Physo135965;rank=3 scaffold_42 . exon 107785 107863 . - . ID=Physo135965.3;Parent=Physo135965;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_42 . CDS 107927 108160 . - 0 ID=Physo135965;Parent=Physo135965;rank=2 scaffold_42 . exon 107927 108160 . - . ID=Physo135965.2;Parent=Physo135965;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 108210 108681 . - 0 ID=Physo135965;Parent=Physo135965;rank=1 scaffold_42 . repeat_region 110747 110763 . ? . description=dust scaffold_42 . repeat_region 110775 110829 . ? . description=trf scaffold_42 . repeat_region 113587 113607 . ? . description=trf scaffold_42 . repeat_region 114668 115365 . - . description=GypsyPi-1c_I-int scaffold_42 . repeat_region 115709 115758 . ? . description=dust scaffold_42 . repeat_region 117034 117094 . ? . description=dust scaffold_42 . exon 108210 108681 . - . ID=Physo135965.1;Parent=Physo135965;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 112754 115098 . - . ID=Physo135966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420029;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 112754 115098 . - . ID=Physo135966;Parent=Physo135966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 112754 113331 . - 0 ID=Physo135966;Parent=Physo135966;rank=3 scaffold_42 . exon 112754 113331 . - . ID=Physo135966.3;Parent=Physo135966;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 113669 113874 . - 0 ID=Physo135966;Parent=Physo135966;rank=2 scaffold_42 . exon 113669 113874 . - . ID=Physo135966.2;Parent=Physo135966;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 113996 115098 . - 0 ID=Physo135966;Parent=Physo135966;rank=1 scaffold_42 . exon 113996 115098 . - . ID=Physo135966.1;Parent=Physo135966;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 117717 119052 . + . ID=Physo135967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420030;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 117717 119052 . + . ID=Physo135967;Parent=Physo135967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 117717 117788 . + 0 ID=Physo135967;Parent=Physo135967;rank=1 scaffold_42 . exon 117717 117788 . + . ID=Physo135967.1;Parent=Physo135967;constitutive=1;rank=1 scaffold_42 . CDS 117868 118746 . + 0 ID=Physo135967;Parent=Physo135967;rank=2 scaffold_42 . exon 117868 118746 . + . ID=Physo135967.2;Parent=Physo135967;constitutive=1;rank=2 scaffold_42 . CDS 118810 119052 . + 0 ID=Physo135967;Parent=Physo135967;rank=3 scaffold_42 . biological_region 118200 118202 0.999 - . logic_name=eponine scaffold_42 . biological_region 118220 118220 0.999 + . logic_name=eponine scaffold_42 . biological_region 118887 118892 0.999 - . logic_name=eponine scaffold_42 . biological_region 118976 118976 0.999 - . logic_name=eponine scaffold_42 . biological_region 126903 126906 0.999 - . logic_name=eponine scaffold_42 . biological_region 127388 127389 0.999 + . logic_name=eponine scaffold_42 . biological_region 127475 127476 0.999 + . logic_name=eponine scaffold_42 . exon 118810 119052 . + . ID=Physo135967.3;Parent=Physo135967;constitutive=1;rank=3 scaffold_42 ensembl protein_coding_gene 123882 130698 . - . ID=Physo135968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420031;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 123882 130698 . - . ID=Physo135968;Parent=Physo135968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 123882 123899 . - 0 ID=Physo135968;Parent=Physo135968;rank=6 scaffold_42 . exon 123882 123899 . - . ID=Physo135968.6;Parent=Physo135968;constitutive=1;rank=6 scaffold_42 . CDS 123977 124312 . - 0 ID=Physo135968;Parent=Physo135968;rank=5 scaffold_42 . exon 123977 124312 . - . ID=Physo135968.5;Parent=Physo135968;constitutive=1;rank=5 scaffold_42 . CDS 124814 127132 . - 0 ID=Physo135968;Parent=Physo135968;rank=4 scaffold_42 . exon 124814 127132 . - . ID=Physo135968.4;Parent=Physo135968;constitutive=1;rank=4 scaffold_42 . CDS 127403 127504 . - 0 ID=Physo135968;Parent=Physo135968;rank=3 scaffold_42 . exon 127403 127504 . - . ID=Physo135968.3;Parent=Physo135968;constitutive=1;rank=3 scaffold_42 . CDS 127559 128221 . - 0 ID=Physo135968;Parent=Physo135968;rank=2 scaffold_42 . exon 127559 128221 . - . ID=Physo135968.2;Parent=Physo135968;constitutive=1;rank=2 scaffold_42 . CDS 128293 130698 . - 0 ID=Physo135968;Parent=Physo135968;rank=1 scaffold_42 . repeat_region 130685 130760 . ? . description=dust scaffold_42 . repeat_region 130686 130724 . ? . description=trf scaffold_42 . repeat_region 130698 130753 . ? . description=trf scaffold_42 . repeat_region 130698 130760 . ? . description=trf scaffold_42 . repeat_region 130698 130764 . ? . description=trf scaffold_42 . repeat_region 131785 133044 . - . description=GypsyPi-1c_I-int scaffold_42 . repeat_region 133617 133696 . ? . description=trf scaffold_42 . repeat_region 136677 136685 . ? . description=dust scaffold_42 . exon 128293 130698 . - . ID=Physo135968.1;Parent=Physo135968;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 131667 135092 . - . ID=Physo135969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420032;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 131667 135092 . - . ID=Physo135969;Parent=Physo135969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 131667 132952 . - 0 ID=Physo135969;Parent=Physo135969;rank=6 scaffold_42 . exon 131667 132952 . - . ID=Physo135969.6;Parent=Physo135969;constitutive=1;ensembl_phase=1;rank=6 scaffold_42 . CDS 132988 133738 . - 0 ID=Physo135969;Parent=Physo135969;rank=5 scaffold_42 . exon 132988 133738 . - . ID=Physo135969.5;Parent=Physo135969;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_42 . CDS 133779 133971 . - 0 ID=Physo135969;Parent=Physo135969;rank=4 scaffold_42 . exon 133779 133971 . - . ID=Physo135969.4;Parent=Physo135969;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 134082 134228 . - 0 ID=Physo135969;Parent=Physo135969;rank=3 scaffold_42 . exon 134082 134228 . - . ID=Physo135969.3;Parent=Physo135969;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_42 . CDS 134361 134987 . - 0 ID=Physo135969;Parent=Physo135969;rank=2 scaffold_42 . exon 134361 134987 . - . ID=Physo135969.2;Parent=Physo135969;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_42 . CDS 135067 135092 . - 0 ID=Physo135969;Parent=Physo135969;rank=1 scaffold_42 . exon 135067 135092 . - . ID=Physo135969.1;Parent=Physo135969;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 135962 137549 . - . ID=Physo135970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420033;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 135962 137549 . - . ID=Physo135970;Parent=Physo135970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 135962 136527 . - 0 ID=Physo135970;Parent=Physo135970;rank=3 scaffold_42 . exon 135962 136527 . - . ID=Physo135970.3;Parent=Physo135970;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 136652 136674 . - 0 ID=Physo135970;Parent=Physo135970;rank=2 scaffold_42 . exon 136652 136674 . - . ID=Physo135970.2;Parent=Physo135970;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 136717 137549 . - 0 ID=Physo135970;Parent=Physo135970;rank=1 scaffold_42 . exon 136717 137549 . - . ID=Physo135970.1;Parent=Physo135970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . biological_region 139509 139519 0.999 + . logic_name=eponine scaffold_42 . biological_region 139868 139870 0.999 + . logic_name=eponine scaffold_42 . biological_region 140399 140400 0.999 - . logic_name=eponine scaffold_42 . biological_region 140428 140428 0.999 + . logic_name=eponine scaffold_42 . biological_region 140452 140461 0.999 + . logic_name=eponine scaffold_42 . biological_region 144173 144182 0.999 - . logic_name=eponine scaffold_42 . biological_region 144206 144206 0.999 - . logic_name=eponine scaffold_42 . biological_region 144234 144235 0.999 + . logic_name=eponine scaffold_42 . biological_region 145115 145125 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 139407 140977 . - . ID=Physo135971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420034;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 139407 140977 . - . ID=Physo135971;Parent=Physo135971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 139407 140977 . - . ID=Physo135971.1;Parent=Physo135971;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_42 . CDS 139490 140977 . - 0 ID=Physo135971;Parent=Physo135971;rank=1 scaffold_42 ensembl pseudogene 143656 145226 . + . ID=Physo135972;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_420035;logic_name=jgi_physo1_1 scaffold_42 ensembl pseudogene 143656 145226 . + . ID=Physo135972;Parent=Physo135972;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_42 . exon 143656 145226 . + . ID=Physo135972.1;Parent=Physo135972;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_42 ensembl protein_coding_gene 148980 149616 . - . ID=Physo135973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420036;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 148980 149616 . - . ID=Physo135973;Parent=Physo135973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 148980 149140 . - 0 ID=Physo135973;Parent=Physo135973;rank=3 scaffold_42 . exon 148980 149140 . - . ID=Physo135973.3;Parent=Physo135973;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 149188 149518 . - 0 ID=Physo135973;Parent=Physo135973;rank=2 scaffold_42 . exon 149188 149518 . - . ID=Physo135973.2;Parent=Physo135973;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 149599 149616 . - 0 ID=Physo135973;Parent=Physo135973;rank=1 scaffold_42 . exon 149599 149616 . - . ID=Physo135973.1;Parent=Physo135973;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 152740 153439 . + . ID=Physo135974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420037;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 152740 153439 . + . ID=Physo135974;Parent=Physo135974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 152740 153439 . + . ID=Physo135974.1;Parent=Physo135974;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_42 . CDS 152772 153380 . + 0 ID=Physo135974;Parent=Physo135974;rank=1 scaffold_42 ensembl protein_coding_gene 153586 155383 . - . ID=Physo135975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420038;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 153586 155383 . - . ID=Physo135975;Parent=Physo135975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 153586 153602 . - 0 ID=Physo135975;Parent=Physo135975;rank=2 scaffold_42 . exon 153586 153602 . - . ID=Physo135975.2;Parent=Physo135975;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 153649 155383 . - 0 ID=Physo135975;Parent=Physo135975;rank=1 scaffold_42 . exon 153649 155383 . - . ID=Physo135975.1;Parent=Physo135975;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 155756 158979 . - . ID=Physo135976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420039;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 155756 158979 . - . ID=Physo135976;Parent=Physo135976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 155756 157265 . - 0 ID=Physo135976;Parent=Physo135976;rank=2 scaffold_42 . exon 155756 157265 . - . ID=Physo135976.2;Parent=Physo135976;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 157604 158979 . - 0 ID=Physo135976;Parent=Physo135976;rank=1 scaffold_42 . biological_region 157201 157203 0.999 - . logic_name=eponine scaffold_42 . biological_region 157232 157237 0.999 - . logic_name=eponine scaffold_42 . biological_region 157284 157285 0.999 - . logic_name=eponine scaffold_42 . repeat_region 164705 164724 . ? . description=trf scaffold_42 ensembl protein_coding_gene 159125 162549 . - . ID=Physo108910;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420004;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 159125 162549 . - . ID=Physo108910;Parent=Physo108910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 159125 159684 . - . ID=Physo108910.4;Parent=Physo108910;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_42 . CDS 159317 159684 . - 0 ID=Physo108910;Parent=Physo108910;rank=4 scaffold_42 . CDS 159748 162226 . - 0 ID=Physo108910;Parent=Physo108910;rank=3 scaffold_42 . exon 159748 162226 . - . ID=Physo108910.3;Parent=Physo108910;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 162313 162359 . - 0 ID=Physo108910;Parent=Physo108910;rank=2 scaffold_42 . exon 162313 162359 . - . ID=Physo108910.2;Parent=Physo108910;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 162480 162549 . - 0 ID=Physo108910;Parent=Physo108910;rank=1 scaffold_42 . exon 162480 162549 . - . ID=Physo108910.1;Parent=Physo108910;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . exon 157604 158979 . - . ID=Physo135976.1;Parent=Physo135976;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 164860 166384 . + . ID=Physo135978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420041;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 164860 166384 . + . ID=Physo135978;Parent=Physo135978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 164860 166284 . + 0 ID=Physo135978;Parent=Physo135978;rank=1 scaffold_42 . exon 164860 166384 . + . ID=Physo135978.1;Parent=Physo135978;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_42 ensembl tRNA_gene 173203 173275 . - . ID=EPrPSOG00000000229;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_42 ensembl transcript 173203 173275 . - . ID=EPrPSOT00000000229;Parent=EPrPSOG00000000229;biotype=tRNA;logic_name=ncrna_eg scaffold_42 ensembl tRNA_gene 176553 176625 . + . ID=EPrPSOG00000000273;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_42 ensembl transcript 176553 176625 . + . ID=EPrPSOT00000000273;Parent=EPrPSOG00000000273;biotype=tRNA;logic_name=ncrna_eg scaffold_42 . exon 173203 173275 . - . ID=EPrPSOE00000000229;Parent=EPrPSOT00000000229;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . exon 176553 176625 . + . ID=EPrPSOE00000000273;Parent=EPrPSOT00000000273;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 168283 168721 . + . ID=Physo108911;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420005;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 168283 168721 . + . ID=Physo108911;Parent=Physo108911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 168283 168425 . + 0 ID=Physo108911;Parent=Physo108911;rank=1 scaffold_42 . exon 168283 168425 . + . ID=Physo108911.1;Parent=Physo108911;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 168505 168721 . + 0 ID=Physo108911;Parent=Physo108911;rank=2 scaffold_42 . exon 168505 168721 . + . ID=Physo108911.2;Parent=Physo108911;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 ensembl protein_coding_gene 173633 175030 . - . ID=Physo135980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420043;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 173633 175030 . - . ID=Physo135980;Parent=Physo135980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 173633 175030 . - 0 ID=Physo135980;Parent=Physo135980;rank=1 scaffold_42 . exon 173633 175030 . - . ID=Physo135980.1;Parent=Physo135980;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 175801 176195 . + . ID=Physo135981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420044;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 175801 176195 . + . ID=Physo135981;Parent=Physo135981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 175801 175805 . + 0 ID=Physo135981;Parent=Physo135981;rank=1 scaffold_42 . exon 175801 175805 . + . ID=Physo135981.1;Parent=Physo135981;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 175895 176195 . + 0 ID=Physo135981;Parent=Physo135981;rank=2 scaffold_42 . exon 175895 176195 . + . ID=Physo135981.2;Parent=Physo135981;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . biological_region 177074 177078 0.999 - . logic_name=eponine scaffold_42 . biological_region 177348 177353 0.999 + . logic_name=eponine scaffold_42 . repeat_region 178444 178451 . ? . description=dust scaffold_42 . biological_region 179815 179816 0.999 + . logic_name=eponine scaffold_42 . biological_region 179882 179883 0.999 - . logic_name=eponine scaffold_42 . biological_region 179914 179920 0.999 - . logic_name=eponine scaffold_42 . biological_region 184697 184702 0.999 + . logic_name=eponine scaffold_42 . biological_region 184816 184820 0.999 - . logic_name=eponine scaffold_42 . biological_region 185065 185065 0.999 - . logic_name=eponine scaffold_42 . biological_region 185256 185259 0.999 + . logic_name=eponine scaffold_42 . repeat_region 185358 185399 . ? . description=trf scaffold_42 . biological_region 186452 186452 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 179771 181170 . + . ID=Physo108912;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420006;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 179771 181170 . + . ID=Physo108912;Parent=Physo108912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 179771 179821 . + . ID=Physo108912.1;Parent=Physo108912;constitutive=1;ensembl_phase=-1;rank=1 scaffold_42 . CDS 179819 179821 . + 0 ID=Physo108912;Parent=Physo108912;rank=1 scaffold_42 . CDS 180178 180674 . + 0 ID=Physo108912;Parent=Physo108912;rank=2 scaffold_42 . exon 180178 180674 . + . ID=Physo108912.2;Parent=Physo108912;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 180759 180903 . + 0 ID=Physo108912;Parent=Physo108912;rank=3 scaffold_42 . exon 180759 181170 . + . ID=Physo108912.3;Parent=Physo108912;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_42 ensembl protein_coding_gene 186085 189495 . + . ID=Physo108913;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420007;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 186085 189495 . + . ID=Physo108913;Parent=Physo108913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 186085 189399 . + 0 ID=Physo108913;Parent=Physo108913;rank=1 scaffold_42 . exon 186085 189495 . + . ID=Physo108913.1;Parent=Physo108913;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_42 ensembl protein_coding_gene 177303 178397 . + . ID=Physo135982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420045;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 177303 178397 . + . ID=Physo135982;Parent=Physo135982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 177303 178397 . + 0 ID=Physo135982;Parent=Physo135982;rank=1 scaffold_42 . exon 177303 178397 . + . ID=Physo135982.1;Parent=Physo135982;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 182183 185411 . + . ID=Physo157333;biotype=protein_coding;external_name=C_scaffold_42000006;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 182183 185411 . + . ID=Physo157333;Parent=Physo157333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 182183 182543 . + 0 ID=Physo157333;Parent=Physo157333;rank=1 scaffold_42 . exon 182183 182543 . + . ID=Physo157333.1;Parent=Physo157333;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 182609 182901 . + 0 ID=Physo157333;Parent=Physo157333;rank=2 scaffold_42 . exon 182609 182901 . + . ID=Physo157333.2;Parent=Physo157333;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 182974 183305 . + 0 ID=Physo157333;Parent=Physo157333;rank=3 scaffold_42 . exon 182974 183305 . + . ID=Physo157333.3;Parent=Physo157333;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_42 . CDS 183351 183417 . + 0 ID=Physo157333;Parent=Physo157333;rank=4 scaffold_42 . exon 183351 183417 . + . ID=Physo157333.4;Parent=Physo157333;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 183562 183667 . + 0 ID=Physo157333;Parent=Physo157333;rank=5 scaffold_42 . exon 183562 183667 . + . ID=Physo157333.5;Parent=Physo157333;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_42 . CDS 183757 184068 . + 0 ID=Physo157333;Parent=Physo157333;rank=6 scaffold_42 . exon 183757 184068 . + . ID=Physo157333.6;Parent=Physo157333;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_42 . CDS 184301 184640 . + 0 ID=Physo157333;Parent=Physo157333;rank=7 scaffold_42 . exon 184301 184640 . + . ID=Physo157333.7;Parent=Physo157333;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_42 . CDS 184737 184824 . + 0 ID=Physo157333;Parent=Physo157333;rank=8 scaffold_42 . exon 184737 184824 . + . ID=Physo157333.8;Parent=Physo157333;constitutive=1;ensembl_phase=2;rank=8 scaffold_42 . CDS 184922 185170 . + 0 ID=Physo157333;Parent=Physo157333;rank=9 scaffold_42 . exon 184922 185170 . + . ID=Physo157333.9;Parent=Physo157333;constitutive=1;rank=9 scaffold_42 . CDS 185289 185411 . + 0 ID=Physo157333;Parent=Physo157333;rank=10 scaffold_42 . exon 185289 185411 . + . ID=Physo157333.10;Parent=Physo157333;constitutive=1;rank=10 scaffold_42 ensembl protein_coding_gene 196463 198766 . + . ID=Physo108914;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420008;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 196463 198766 . + . ID=Physo108914;Parent=Physo108914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 196463 198766 . + 0 ID=Physo108914;Parent=Physo108914;rank=1 scaffold_42 . exon 196463 198766 . + . ID=Physo108914.1;Parent=Physo108914;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 189533 190504 . - . ID=Physo135986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420049;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 189533 190504 . - . ID=Physo135986;Parent=Physo135986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 189533 190504 . - 0 ID=Physo135986;Parent=Physo135986;rank=1 scaffold_42 . exon 189533 190504 . - . ID=Physo135986.1;Parent=Physo135986;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 190768 195494 . + . ID=Physo135987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420050;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 190768 195494 . + . ID=Physo135987;Parent=Physo135987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 190768 190821 . + 0 ID=Physo135987;Parent=Physo135987;rank=1 scaffold_42 . exon 190768 190821 . + . ID=Physo135987.1;Parent=Physo135987;constitutive=1;rank=1 scaffold_42 . CDS 190899 191038 . + 0 ID=Physo135987;Parent=Physo135987;rank=2 scaffold_42 . exon 190899 191038 . + . ID=Physo135987.2;Parent=Physo135987;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 191173 191202 . + 0 ID=Physo135987;Parent=Physo135987;rank=3 scaffold_42 . exon 191173 191202 . + . ID=Physo135987.3;Parent=Physo135987;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_42 . CDS 191289 192438 . + 0 ID=Physo135987;Parent=Physo135987;rank=4 scaffold_42 . exon 191289 192438 . + . ID=Physo135987.4;Parent=Physo135987;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 192509 192789 . + 0 ID=Physo135987;Parent=Physo135987;rank=5 scaffold_42 . exon 192509 192789 . + . ID=Physo135987.5;Parent=Physo135987;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_42 . CDS 193070 195088 . + 0 ID=Physo135987;Parent=Physo135987;rank=6 scaffold_42 . exon 193070 195088 . + . ID=Physo135987.6;Parent=Physo135987;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_42 . CDS 195184 195256 . + 0 ID=Physo135987;Parent=Physo135987;rank=7 scaffold_42 . exon 195184 195256 . + . ID=Physo135987.7;Parent=Physo135987;constitutive=1;ensembl_phase=2;rank=7 scaffold_42 . CDS 195309 195494 . + 0 ID=Physo135987;Parent=Physo135987;rank=8 scaffold_42 . exon 195309 195494 . + . ID=Physo135987.8;Parent=Physo135987;constitutive=1;rank=8 scaffold_42 . biological_region 197527 197529 0.999 - . logic_name=eponine scaffold_42 . biological_region 199493 199494 0.999 - . logic_name=eponine scaffold_42 . biological_region 200008 200011 0.999 + . logic_name=eponine scaffold_42 . biological_region 200105 200106 0.999 - . logic_name=eponine scaffold_42 . repeat_region 200460 200563 . ? . description=dust scaffold_42 . repeat_region 200461 200533 . ? . description=trf scaffold_42 . repeat_region 200461 200533 . ? . description=trf scaffold_42 . repeat_region 200465 200532 . ? . description=trf scaffold_42 . repeat_region 200542 200562 . ? . description=trf scaffold_42 . repeat_region 200865 200913 . ? . description=dust scaffold_42 . repeat_region 201212 201253 . ? . description=dust scaffold_42 . biological_region 205601 205605 0.999 + . logic_name=eponine scaffold_42 . biological_region 205618 205622 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 199122 199971 . - . ID=Physo117432;biotype=protein_coding;external_name=estExt_Genewise1.C_420068;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 199122 199971 . - . ID=Physo117432;Parent=Physo117432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 199122 199186 . - 0 ID=Physo117432;Parent=Physo117432;rank=4 scaffold_42 . exon 199122 199186 . - . ID=Physo117432.4;Parent=Physo117432;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 199264 199536 . - 0 ID=Physo117432;Parent=Physo117432;rank=3 scaffold_42 . exon 199264 199536 . - . ID=Physo117432.3;Parent=Physo117432;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 199617 199687 . - 0 ID=Physo117432;Parent=Physo117432;rank=2 scaffold_42 . exon 199617 199687 . - . ID=Physo117432.2;Parent=Physo117432;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 199775 199908 . - 0 ID=Physo117432;Parent=Physo117432;rank=1 scaffold_42 . exon 199775 199971 . - . ID=Physo117432.1;Parent=Physo117432;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_42 ensembl protein_coding_gene 204606 206058 . - . ID=Physo135991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420054;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 204606 206058 . - . ID=Physo135991;Parent=Physo135991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 204606 205824 . - 0 ID=Physo135991;Parent=Physo135991;rank=2 scaffold_42 . exon 204606 205824 . - . ID=Physo135991.2;Parent=Physo135991;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 206051 206058 . - 0 ID=Physo135991;Parent=Physo135991;rank=1 scaffold_42 . exon 206051 206058 . - . ID=Physo135991.1;Parent=Physo135991;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 200342 204045 . + . ID=Physo157341;biotype=protein_coding;external_name=C_scaffold_42000014;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 200342 204045 . + . ID=Physo157341;Parent=Physo157341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 200342 201082 . + 0 ID=Physo157341;Parent=Physo157341;rank=1 scaffold_42 . exon 200342 201082 . + . ID=Physo157341.1;Parent=Physo157341;constitutive=1;rank=1 scaffold_42 . CDS 201134 202168 . + 0 ID=Physo157341;Parent=Physo157341;rank=2 scaffold_42 . exon 201134 202168 . + . ID=Physo157341.2;Parent=Physo157341;constitutive=1;rank=2 scaffold_42 . CDS 202238 202574 . + 0 ID=Physo157341;Parent=Physo157341;rank=3 scaffold_42 . exon 202238 202574 . + . ID=Physo157341.3;Parent=Physo157341;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 203087 203512 . + 0 ID=Physo157341;Parent=Physo157341;rank=4 scaffold_42 . exon 203087 203512 . + . ID=Physo157341.4;Parent=Physo157341;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 203564 203593 . + 0 ID=Physo157341;Parent=Physo157341;rank=5 scaffold_42 . exon 203564 203593 . + . ID=Physo157341.5;Parent=Physo157341;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_42 . CDS 203670 203724 . + 0 ID=Physo157341;Parent=Physo157341;rank=6 scaffold_42 . exon 203670 203724 . + . ID=Physo157341.6;Parent=Physo157341;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_42 . CDS 203792 203871 . + 0 ID=Physo157341;Parent=Physo157341;rank=7 scaffold_42 . exon 203792 203871 . + . ID=Physo157341.7;Parent=Physo157341;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_42 . CDS 204041 204045 . + 0 ID=Physo157341;Parent=Physo157341;rank=8 scaffold_42 . exon 204041 204045 . + . ID=Physo157341.8;Parent=Physo157341;constitutive=1;ensembl_phase=1;rank=8 scaffold_42 . repeat_region 215749 215822 . - . description=Polinton-1_PI scaffold_42 . repeat_region 216069 216319 . + . description=Polinton-1_PI scaffold_42 ensembl protein_coding_gene 206311 207803 . - . ID=Physo108915;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420009;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 206311 207803 . - . ID=Physo108915;Parent=Physo108915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 206311 207578 . - . ID=Physo108915.2;Parent=Physo108915;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_42 . CDS 206382 207578 . - 0 ID=Physo108915;Parent=Physo108915;rank=2 scaffold_42 . CDS 207600 207803 . - 0 ID=Physo108915;Parent=Physo108915;rank=1 scaffold_42 . exon 207600 207803 . - . ID=Physo108915.1;Parent=Physo108915;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 214410 215506 . - . ID=Physo108916;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420010;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 214410 215506 . - . ID=Physo108916;Parent=Physo108916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 214410 214432 . - 0 ID=Physo108916;Parent=Physo108916;rank=4 scaffold_42 . exon 214410 214432 . - . ID=Physo108916.4;Parent=Physo108916;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 214468 214867 . - 0 ID=Physo108916;Parent=Physo108916;rank=3 scaffold_42 . exon 214468 214867 . - . ID=Physo108916.3;Parent=Physo108916;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 214930 215301 . - 0 ID=Physo108916;Parent=Physo108916;rank=2 scaffold_42 . exon 214930 215301 . - . ID=Physo108916.2;Parent=Physo108916;constitutive=1;rank=2 scaffold_42 . CDS 215372 215506 . - 0 ID=Physo108916;Parent=Physo108916;rank=1 scaffold_42 . exon 215372 215506 . - . ID=Physo108916.1;Parent=Physo108916;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 208256 209832 . + . ID=Physo135993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420056;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 208256 209832 . + . ID=Physo135993;Parent=Physo135993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 208256 208303 . + 0 ID=Physo135993;Parent=Physo135993;rank=1 scaffold_42 . exon 208256 208303 . + . ID=Physo135993.1;Parent=Physo135993;constitutive=1;rank=1 scaffold_42 . CDS 208396 208604 . + 0 ID=Physo135993;Parent=Physo135993;rank=2 scaffold_42 . exon 208396 208604 . + . ID=Physo135993.2;Parent=Physo135993;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 208677 209040 . + 0 ID=Physo135993;Parent=Physo135993;rank=3 scaffold_42 . exon 208677 209040 . + . ID=Physo135993.3;Parent=Physo135993;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 209095 209183 . + 0 ID=Physo135993;Parent=Physo135993;rank=4 scaffold_42 . exon 209095 209183 . + . ID=Physo135993.4;Parent=Physo135993;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_42 . CDS 209257 209549 . + 0 ID=Physo135993;Parent=Physo135993;rank=5 scaffold_42 . exon 209257 209549 . + . ID=Physo135993.5;Parent=Physo135993;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_42 . CDS 209618 209832 . + 0 ID=Physo135993;Parent=Physo135993;rank=6 scaffold_42 . exon 209618 209832 . + . ID=Physo135993.6;Parent=Physo135993;constitutive=1;ensembl_phase=1;rank=6 scaffold_42 ensembl protein_coding_gene 210778 211897 . + . ID=Physo135994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420057;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 210778 211897 . + . ID=Physo135994;Parent=Physo135994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 210778 210816 . + 0 ID=Physo135994;Parent=Physo135994;rank=1 scaffold_42 . exon 210778 210816 . + . ID=Physo135994.1;Parent=Physo135994;constitutive=1;rank=1 scaffold_42 . CDS 210890 211897 . + 0 ID=Physo135994;Parent=Physo135994;rank=2 scaffold_42 . exon 210890 211897 . + . ID=Physo135994.2;Parent=Physo135994;constitutive=1;rank=2 scaffold_42 . repeat_region 222547 224752 . ? . description=dust scaffold_42 . repeat_region 225551 226269 . ? . description=dust scaffold_42 ensembl pseudogene 216149 217408 . + . ID=Physo117443;biotype=pseudogene;external_name=estExt_Genewise1.C_420079;logic_name=jgi_physo1_1 scaffold_42 ensembl pseudogene 216149 217408 . + . ID=Physo117443;Parent=Physo117443;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_42 . exon 216149 216260 . + . ID=Physo117443.1;Parent=Physo117443;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_42 . exon 216300 217408 . + . ID=Physo117443.2;Parent=Physo117443;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_42 . repeat_region 226289 227041 . + . description=Polinton-1_PI scaffold_42 . repeat_region 228908 229689 . + . description=Polinton-1_PI scaffold_42 . repeat_region 230430 231621 . + . description=Polinton-1_PI scaffold_42 . repeat_region 231626 231787 . + . description=Polinton-1_PI scaffold_42 . repeat_region 232078 232394 . - . description=Polinton-1_PI scaffold_42 . repeat_region 233064 233143 . - . description=Polinton-1_PI scaffold_42 . repeat_region 234788 234822 . - . description=Polinton-1_PI scaffold_42 . repeat_region 234957 235142 . - . description=Polinton-1_PI scaffold_42 . repeat_region 235385 235408 . ? . description=trf scaffold_42 . repeat_region 236317 236345 . ? . description=dust scaffold_42 . biological_region 239956 239958 0.999 - . logic_name=eponine scaffold_42 . biological_region 240961 240963 0.999 - . logic_name=eponine scaffold_42 . biological_region 241015 241015 0.999 + . logic_name=eponine scaffold_42 . biological_region 241818 241821 0.999 + . logic_name=eponine scaffold_42 . biological_region 244613 244615 0.999 + . logic_name=eponine scaffold_42 . biological_region 245072 245076 0.999 + . logic_name=eponine scaffold_42 . biological_region 245129 245131 0.999 - . logic_name=eponine scaffold_42 . biological_region 245226 245231 0.999 + . logic_name=eponine scaffold_42 . biological_region 245583 245583 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 238651 245670 . - . ID=Physo108918;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420012;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 238651 245670 . - . ID=Physo108918;Parent=Physo108918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 238651 245670 . - . ID=Physo108918.1;Parent=Physo108918;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_42 . CDS 238738 245670 . - 0 ID=Physo108918;Parent=Physo108918;rank=1 scaffold_42 ensembl protein_coding_gene 236186 238525 . + . ID=Physo135997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420060;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 236186 238525 . + . ID=Physo135997;Parent=Physo135997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 236186 236305 . + . ID=Physo135997.1;Parent=Physo135997;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_42 . CDS 236214 236305 . + 0 ID=Physo135997;Parent=Physo135997;rank=1 scaffold_42 . CDS 236416 238525 . + 0 ID=Physo135997;Parent=Physo135997;rank=2 scaffold_42 . exon 236416 238525 . + . ID=Physo135997.2;Parent=Physo135997;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . repeat_region 246157 246202 . ? . description=trf scaffold_42 . repeat_region 246291 246317 . ? . description=trf scaffold_42 . repeat_region 248321 248341 . ? . description=trf scaffold_42 . repeat_region 248784 248825 . ? . description=trf scaffold_42 . repeat_region 251757 251836 . ? . description=trf scaffold_42 ensembl protein_coding_gene 246133 247862 . - . ID=Physo135999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420062;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 246133 247862 . - . ID=Physo135999;Parent=Physo135999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 246133 246405 . - 0 ID=Physo135999;Parent=Physo135999;rank=2 scaffold_42 . exon 246133 246405 . - . ID=Physo135999.2;Parent=Physo135999;constitutive=1;rank=2 scaffold_42 . CDS 246570 247862 . - 0 ID=Physo135999;Parent=Physo135999;rank=1 scaffold_42 . exon 246570 247862 . - . ID=Physo135999.1;Parent=Physo135999;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 249320 252281 . - . ID=Physo136000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420063;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 249320 252281 . - . ID=Physo136000;Parent=Physo136000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 249320 249587 . - 0 ID=Physo136000;Parent=Physo136000;rank=6 scaffold_42 . exon 249320 249587 . - . ID=Physo136000.6;Parent=Physo136000;constitutive=1;ensembl_phase=2;rank=6 scaffold_42 . CDS 249666 249814 . - 0 ID=Physo136000;Parent=Physo136000;rank=5 scaffold_42 . exon 249666 249814 . - . ID=Physo136000.5;Parent=Physo136000;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_42 . CDS 249881 249948 . - 0 ID=Physo136000;Parent=Physo136000;rank=4 scaffold_42 . exon 249881 249948 . - . ID=Physo136000.4;Parent=Physo136000;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 250018 250112 . - 0 ID=Physo136000;Parent=Physo136000;rank=3 scaffold_42 . exon 250018 250112 . - . ID=Physo136000.3;Parent=Physo136000;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 250192 252124 . - 0 ID=Physo136000;Parent=Physo136000;rank=2 scaffold_42 . exon 250192 252124 . - . ID=Physo136000.2;Parent=Physo136000;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_42 . CDS 252197 252281 . - 0 ID=Physo136000;Parent=Physo136000;rank=1 scaffold_42 . exon 252197 252281 . - . ID=Physo136000.1;Parent=Physo136000;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 252535 253695 . + . ID=Physo136001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420064;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 252535 253695 . + . ID=Physo136001;Parent=Physo136001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 252535 252755 . + . ID=Physo136001.1;Parent=Physo136001;constitutive=1;ensembl_phase=-1;rank=1 scaffold_42 . CDS 252573 252755 . + 0 ID=Physo136001;Parent=Physo136001;rank=1 scaffold_42 . CDS 252838 253695 . + 0 ID=Physo136001;Parent=Physo136001;rank=2 scaffold_42 . exon 252838 253695 . + . ID=Physo136001.2;Parent=Physo136001;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 253964 255231 . + . ID=Physo136002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420065;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 253964 255231 . + . ID=Physo136002;Parent=Physo136002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 253964 254137 . + 0 ID=Physo136002;Parent=Physo136002;rank=1 scaffold_42 . exon 253964 254137 . + . ID=Physo136002.1;Parent=Physo136002;constitutive=1;rank=1 scaffold_42 . CDS 254197 254250 . + 0 ID=Physo136002;Parent=Physo136002;rank=2 scaffold_42 . exon 254197 254250 . + . ID=Physo136002.2;Parent=Physo136002;constitutive=1;rank=2 scaffold_42 . CDS 254319 254462 . + 0 ID=Physo136002;Parent=Physo136002;rank=3 scaffold_42 . exon 254319 254462 . + . ID=Physo136002.3;Parent=Physo136002;constitutive=1;rank=3 scaffold_42 . CDS 254530 254842 . + 0 ID=Physo136002;Parent=Physo136002;rank=4 scaffold_42 . exon 254530 254842 . + . ID=Physo136002.4;Parent=Physo136002;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_42 . CDS 255188 255231 . + 0 ID=Physo136002;Parent=Physo136002;rank=5 scaffold_42 . exon 255188 255231 . + . ID=Physo136002.5;Parent=Physo136002;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 . repeat_region 255408 255442 . ? . description=dust scaffold_42 . repeat_region 258916 258924 . ? . description=dust scaffold_42 . repeat_region 261794 261871 . ? . description=dust scaffold_42 . repeat_region 262024 262073 . ? . description=dust scaffold_42 ensembl protein_coding_gene 256531 256979 . - . ID=Physo136003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420066;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 256531 256979 . - . ID=Physo136003;Parent=Physo136003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 256531 256563 . - 0 ID=Physo136003;Parent=Physo136003;rank=2 scaffold_42 . exon 256531 256563 . - . ID=Physo136003.2;Parent=Physo136003;constitutive=1;rank=2 scaffold_42 . CDS 256638 256979 . - 0 ID=Physo136003;Parent=Physo136003;rank=1 scaffold_42 . exon 256638 256979 . - . ID=Physo136003.1;Parent=Physo136003;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 259861 260986 . - . ID=Physo136004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420067;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 259861 260986 . - . ID=Physo136004;Parent=Physo136004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 259861 259902 . - 0 ID=Physo136004;Parent=Physo136004;rank=2 scaffold_42 . exon 259861 259902 . - . ID=Physo136004.2;Parent=Physo136004;constitutive=1;rank=2 scaffold_42 . CDS 259976 260986 . - 0 ID=Physo136004;Parent=Physo136004;rank=1 scaffold_42 . exon 259976 260986 . - . ID=Physo136004.1;Parent=Physo136004;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 261656 262120 . - . ID=Physo136005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420068;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 261656 262120 . - . ID=Physo136005;Parent=Physo136005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 261656 262120 . - 0 ID=Physo136005;Parent=Physo136005;rank=1 scaffold_42 . exon 261656 262120 . - . ID=Physo136005.1;Parent=Physo136005;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 262302 263436 . + . ID=Physo136006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420069;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 262302 263436 . + . ID=Physo136006;Parent=Physo136006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 262302 262483 . + 0 ID=Physo136006;Parent=Physo136006;rank=1 scaffold_42 . exon 262302 262483 . + . ID=Physo136006.1;Parent=Physo136006;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 262819 263309 . + 0 ID=Physo136006;Parent=Physo136006;rank=2 scaffold_42 . exon 262819 263309 . + . ID=Physo136006.2;Parent=Physo136006;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 263369 263436 . + 0 ID=Physo136006;Parent=Physo136006;rank=3 scaffold_42 . exon 263369 263436 . + . ID=Physo136006.3;Parent=Physo136006;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . biological_region 267010 267011 0.999 - . logic_name=eponine scaffold_42 . repeat_region 267468 267487 . ? . description=trf scaffold_42 . biological_region 267622 267625 0.999 + . logic_name=eponine scaffold_42 . biological_region 267640 267642 0.999 - . logic_name=eponine scaffold_42 . repeat_region 267734 267786 . ? . description=trf scaffold_42 . repeat_region 268053 268073 . ? . description=trf scaffold_42 . biological_region 271319 271322 0.999 - . logic_name=eponine scaffold_42 . biological_region 271402 271405 0.999 + . logic_name=eponine scaffold_42 . biological_region 271423 271425 0.999 + . logic_name=eponine scaffold_42 . biological_region 271470 271471 0.999 + . logic_name=eponine scaffold_42 . biological_region 271551 271551 0.999 + . logic_name=eponine scaffold_42 . biological_region 271583 271585 0.999 - . logic_name=eponine scaffold_42 . biological_region 271666 271667 0.999 + . logic_name=eponine scaffold_42 . biological_region 271755 271759 0.999 - . logic_name=eponine scaffold_42 . biological_region 274141 274143 0.999 + . logic_name=eponine scaffold_42 . biological_region 274279 274283 0.999 + . logic_name=eponine scaffold_42 . biological_region 274438 274438 0.999 + . logic_name=eponine scaffold_42 . biological_region 274506 274507 0.999 - . logic_name=eponine scaffold_42 . biological_region 274534 274538 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 265796 266962 . + . ID=Physo136007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420070;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 265796 266962 . + . ID=Physo136007;Parent=Physo136007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 265796 266962 . + 0 ID=Physo136007;Parent=Physo136007;rank=1 scaffold_42 . exon 265796 266962 . + . ID=Physo136007.1;Parent=Physo136007;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 267541 270277 . + . ID=Physo136008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420071;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 267541 270277 . + . ID=Physo136008;Parent=Physo136008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 267541 268001 . + 0 ID=Physo136008;Parent=Physo136008;rank=1 scaffold_42 . exon 267541 268001 . + . ID=Physo136008.1;Parent=Physo136008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 268084 268186 . + 0 ID=Physo136008;Parent=Physo136008;rank=2 scaffold_42 . exon 268084 268186 . + . ID=Physo136008.2;Parent=Physo136008;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 268298 270277 . + 0 ID=Physo136008;Parent=Physo136008;rank=3 scaffold_42 . exon 268298 270277 . + . ID=Physo136008.3;Parent=Physo136008;constitutive=1;rank=3 scaffold_42 ensembl protein_coding_gene 270636 272723 . - . ID=Physo136009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420072;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 270636 272723 . - . ID=Physo136009;Parent=Physo136009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 270636 272723 . - 0 ID=Physo136009;Parent=Physo136009;rank=1 scaffold_42 . exon 270636 272723 . - . ID=Physo136009.1;Parent=Physo136009;constitutive=1;rank=1 scaffold_42 . repeat_region 281452 281460 . ? . description=dust scaffold_42 ensembl protein_coding_gene 275191 278361 . - . ID=Physo136010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420073;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 275191 278361 . - . ID=Physo136010;Parent=Physo136010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 275191 278361 . - 0 ID=Physo136010;Parent=Physo136010;rank=1 scaffold_42 . exon 275191 278361 . - . ID=Physo136010.1;Parent=Physo136010;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 278735 279989 . + . ID=Physo136011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420074;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 278735 279989 . + . ID=Physo136011;Parent=Physo136011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 278735 278842 . + 0 ID=Physo136011;Parent=Physo136011;rank=1 scaffold_42 . exon 278735 278842 . + . ID=Physo136011.1;Parent=Physo136011;constitutive=1;rank=1 scaffold_42 . CDS 278935 279194 . + 0 ID=Physo136011;Parent=Physo136011;rank=2 scaffold_42 . exon 278935 279194 . + . ID=Physo136011.2;Parent=Physo136011;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 279268 279338 . + 0 ID=Physo136011;Parent=Physo136011;rank=3 scaffold_42 . exon 279268 279338 . + . ID=Physo136011.3;Parent=Physo136011;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 279405 279907 . + 0 ID=Physo136011;Parent=Physo136011;rank=4 scaffold_42 . exon 279405 279989 . + . ID=Physo136011.4;Parent=Physo136011;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_42 ensembl protein_coding_gene 280599 281354 . + . ID=Physo136012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420075;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 280599 281354 . + . ID=Physo136012;Parent=Physo136012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 280599 281297 . + 0 ID=Physo136012;Parent=Physo136012;rank=1 scaffold_42 . exon 280599 281354 . + . ID=Physo136012.1;Parent=Physo136012;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_42 . repeat_region 285305 285432 . ? . description=trf scaffold_42 . repeat_region 285306 285459 . ? . description=trf scaffold_42 . repeat_region 286289 286314 . ? . description=trf scaffold_42 . biological_region 286729 286730 0.999 - . logic_name=eponine scaffold_42 . biological_region 290662 290666 0.999 - . logic_name=eponine scaffold_42 ensembl protein_coding_gene 284989 287088 . - . ID=Physo136013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420076;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 284989 287088 . - . ID=Physo136013;Parent=Physo136013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 284989 287088 . - 0 ID=Physo136013;Parent=Physo136013;rank=1 scaffold_42 . exon 284989 287088 . - . ID=Physo136013.1;Parent=Physo136013;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 287353 290295 . - . ID=Physo136014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420077;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 287353 290295 . - . ID=Physo136014;Parent=Physo136014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 287353 289506 . - 0 ID=Physo136014;Parent=Physo136014;rank=3 scaffold_42 . exon 287353 289506 . - . ID=Physo136014.3;Parent=Physo136014;constitutive=1;rank=3 scaffold_42 . CDS 289584 290162 . - 0 ID=Physo136014;Parent=Physo136014;rank=2 scaffold_42 . exon 289584 290162 . - . ID=Physo136014.2;Parent=Physo136014;constitutive=1;rank=2 scaffold_42 . CDS 290287 290295 . - 0 ID=Physo136014;Parent=Physo136014;rank=1 scaffold_42 . exon 290287 290295 . - . ID=Physo136014.1;Parent=Physo136014;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 290426 292092 . + . ID=Physo136015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420078;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 290426 292092 . + . ID=Physo136015;Parent=Physo136015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 290426 291316 . + 0 ID=Physo136015;Parent=Physo136015;rank=1 scaffold_42 . exon 290426 291316 . + . ID=Physo136015.1;Parent=Physo136015;constitutive=1;rank=1 scaffold_42 . CDS 291356 291972 . + 0 ID=Physo136015;Parent=Physo136015;rank=2 scaffold_42 . exon 291356 291972 . + . ID=Physo136015.2;Parent=Physo136015;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 292005 292092 . + 0 ID=Physo136015;Parent=Physo136015;rank=3 scaffold_42 . exon 292005 292092 . + . ID=Physo136015.3;Parent=Physo136015;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 ensembl protein_coding_gene 301514 303319 . + . ID=Physo136016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420079;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 301514 303319 . + . ID=Physo136016;Parent=Physo136016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 301514 303259 . + 0 ID=Physo136016;Parent=Physo136016;rank=1 scaffold_42 . exon 301514 303319 . + . ID=Physo136016.1;Parent=Physo136016;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_42 ensembl protein_coding_gene 304094 305440 . + . ID=Physo136017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420080;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 304094 305440 . + . ID=Physo136017;Parent=Physo136017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 304094 305440 . + 0 ID=Physo136017;Parent=Physo136017;rank=1 scaffold_42 . exon 304094 305440 . + . ID=Physo136017.1;Parent=Physo136017;constitutive=1;rank=1 scaffold_42 . biological_region 306235 306246 0.999 + . logic_name=eponine scaffold_42 . biological_region 306276 306280 0.999 + . logic_name=eponine scaffold_42 . biological_region 306298 306300 0.999 - . logic_name=eponine scaffold_42 . biological_region 306339 306345 0.999 - . logic_name=eponine scaffold_42 . biological_region 306355 306357 0.999 - . logic_name=eponine scaffold_42 . biological_region 306375 306380 0.999 - . logic_name=eponine scaffold_42 . biological_region 306644 306645 0.999 + . logic_name=eponine scaffold_42 . repeat_region 306780 306839 . ? . description=dust scaffold_42 . biological_region 307228 307229 0.999 - . logic_name=eponine scaffold_42 . biological_region 309794 309799 0.999 - . logic_name=eponine scaffold_42 . biological_region 310063 310064 0.999 + . logic_name=eponine scaffold_42 . biological_region 310349 310353 0.999 + . logic_name=eponine scaffold_42 . biological_region 310833 310836 0.999 - . logic_name=eponine scaffold_42 . biological_region 311129 311133 0.999 + . logic_name=eponine scaffold_42 . biological_region 311238 311238 0.999 + . logic_name=eponine scaffold_42 . biological_region 311525 311525 0.999 - . logic_name=eponine scaffold_42 . biological_region 313382 313386 0.999 - . logic_name=eponine scaffold_42 . biological_region 313600 313602 0.999 + . logic_name=eponine scaffold_42 . biological_region 314336 314337 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 306150 307240 . + . ID=Physo136018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420081;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 306150 307240 . + . ID=Physo136018;Parent=Physo136018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 306150 306899 . + 0 ID=Physo136018;Parent=Physo136018;rank=1 scaffold_42 . exon 306150 306899 . + . ID=Physo136018.1;Parent=Physo136018;constitutive=1;rank=1 scaffold_42 . CDS 306974 307240 . + 0 ID=Physo136018;Parent=Physo136018;rank=2 scaffold_42 . exon 306974 307240 . + . ID=Physo136018.2;Parent=Physo136018;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 309937 311709 . + . ID=Physo136019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420082;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 309937 311709 . + . ID=Physo136019;Parent=Physo136019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 309937 311709 . + . ID=Physo136019.1;Parent=Physo136019;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_42 . CDS 309996 311690 . + 0 ID=Physo136019;Parent=Physo136019;rank=1 scaffold_42 ensembl protein_coding_gene 313240 314928 . + . ID=Physo136020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420083;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 313240 314928 . + . ID=Physo136020;Parent=Physo136020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 313240 314928 . + 0 ID=Physo136020;Parent=Physo136020;rank=1 scaffold_42 . exon 313240 314928 . + . ID=Physo136020.1;Parent=Physo136020;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 315466 317130 . + . ID=Physo136021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420084;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 315466 317130 . + . ID=Physo136021;Parent=Physo136021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 315466 317130 . + . ID=Physo136021.1;Parent=Physo136021;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_42 . CDS 316006 317112 . + 0 ID=Physo136021;Parent=Physo136021;rank=1 scaffold_42 ensembl protein_coding_gene 317405 317773 . + . ID=Physo136022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420085;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 317405 317773 . + . ID=Physo136022;Parent=Physo136022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 317405 317773 . + 0 ID=Physo136022;Parent=Physo136022;rank=1 scaffold_42 . exon 317405 317773 . + . ID=Physo136022.1;Parent=Physo136022;constitutive=1;rank=1 scaffold_42 . repeat_region 324531 324540 . ? . description=dust scaffold_42 . repeat_region 325991 325998 . ? . description=dust scaffold_42 . biological_region 331176 331181 0.999 + . logic_name=eponine scaffold_42 . repeat_region 331620 331641 . ? . description=dust scaffold_42 . repeat_region 331620 331641 . ? . description=trf scaffold_42 ensembl protein_coding_gene 326087 328785 . - . ID=Physo136023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420086;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 326087 328785 . - . ID=Physo136023;Parent=Physo136023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 326087 326498 . - 0 ID=Physo136023;Parent=Physo136023;rank=6 scaffold_42 . exon 326087 326498 . - . ID=Physo136023.6;Parent=Physo136023;constitutive=1;ensembl_phase=2;rank=6 scaffold_42 . CDS 326872 327079 . - 0 ID=Physo136023;Parent=Physo136023;rank=5 scaffold_42 . exon 326872 327079 . - . ID=Physo136023.5;Parent=Physo136023;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_42 . CDS 327188 327250 . - 0 ID=Physo136023;Parent=Physo136023;rank=4 scaffold_42 . exon 327188 327250 . - . ID=Physo136023.4;Parent=Physo136023;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 327371 327691 . - 0 ID=Physo136023;Parent=Physo136023;rank=3 scaffold_42 . exon 327371 327691 . - . ID=Physo136023.3;Parent=Physo136023;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 327785 327812 . - 0 ID=Physo136023;Parent=Physo136023;rank=2 scaffold_42 . exon 327785 327812 . - . ID=Physo136023.2;Parent=Physo136023;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 328036 328785 . - 0 ID=Physo136023;Parent=Physo136023;rank=1 scaffold_42 . exon 328036 328785 . - . ID=Physo136023.1;Parent=Physo136023;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 330704 331707 . - . ID=Physo136024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420087;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 330704 331707 . - . ID=Physo136024;Parent=Physo136024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 330704 330767 . - 0 ID=Physo136024;Parent=Physo136024;rank=3 scaffold_42 . exon 330704 330767 . - . ID=Physo136024.3;Parent=Physo136024;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 330837 330898 . - 0 ID=Physo136024;Parent=Physo136024;rank=2 scaffold_42 . exon 330837 330898 . - . ID=Physo136024.2;Parent=Physo136024;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 330967 331707 . - 0 ID=Physo136024;Parent=Physo136024;rank=1 scaffold_42 . exon 330967 331707 . - . ID=Physo136024.1;Parent=Physo136024;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 333940 335121 . - . ID=Physo136025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420088;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 333940 335121 . - . ID=Physo136025;Parent=Physo136025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 333940 333961 . - 0 ID=Physo136025;Parent=Physo136025;rank=4 scaffold_42 . exon 333940 333961 . - . ID=Physo136025.4;Parent=Physo136025;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 334105 334164 . - 0 ID=Physo136025;Parent=Physo136025;rank=3 scaffold_42 . CDS 334372 334425 . - 0 ID=Physo136025;Parent=Physo136025;rank=2 scaffold_42 . CDS 334448 335121 . - 0 ID=Physo136025;Parent=Physo136025;rank=1 scaffold_42 ensembl protein_coding_gene 342958 344247 . - . ID=Physo108919;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420013;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 342958 344247 . - . ID=Physo108919;Parent=Physo108919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 342958 343094 . - 0 ID=Physo108919;Parent=Physo108919;rank=2 scaffold_42 . exon 342958 343094 . - . ID=Physo108919.2;Parent=Physo108919;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 343163 344213 . - 0 ID=Physo108919;Parent=Physo108919;rank=1 scaffold_42 . exon 343163 344247 . - . ID=Physo108919.1;Parent=Physo108919;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_42 . exon 334105 334164 . - . ID=Physo136025.3;Parent=Physo136025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_42 . exon 334372 334425 . - . ID=Physo136025.2;Parent=Physo136025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_42 . exon 334448 335121 . - . ID=Physo136025.1;Parent=Physo136025;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 338409 341895 . - . ID=Physo136026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420089;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 338409 341895 . - . ID=Physo136026;Parent=Physo136026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 338409 341151 . - 0 ID=Physo136026;Parent=Physo136026;rank=4 scaffold_42 . exon 338409 341151 . - . ID=Physo136026.4;Parent=Physo136026;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 341191 341274 . - 0 ID=Physo136026;Parent=Physo136026;rank=3 scaffold_42 . exon 341191 341274 . - . ID=Physo136026.3;Parent=Physo136026;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_42 . CDS 341350 341418 . - 0 ID=Physo136026;Parent=Physo136026;rank=2 scaffold_42 . exon 341350 341418 . - . ID=Physo136026.2;Parent=Physo136026;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_42 . CDS 341492 341895 . - 0 ID=Physo136026;Parent=Physo136026;rank=1 scaffold_42 . exon 341492 341895 . - . ID=Physo136026.1;Parent=Physo136026;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . biological_region 343926 343928 0.999 + . logic_name=eponine scaffold_42 . biological_region 344048 344051 0.999 + . logic_name=eponine scaffold_42 . biological_region 344062 344068 0.999 - . logic_name=eponine scaffold_42 . biological_region 344118 344120 0.999 + . logic_name=eponine scaffold_42 . biological_region 344139 344141 0.999 + . logic_name=eponine scaffold_42 . biological_region 344150 344153 0.999 - . logic_name=eponine scaffold_42 . biological_region 344183 344185 0.999 - . logic_name=eponine scaffold_42 . biological_region 344497 344497 0.999 + . logic_name=eponine scaffold_42 . biological_region 344587 344593 0.999 - . logic_name=eponine scaffold_42 . biological_region 344632 344637 0.999 - . logic_name=eponine scaffold_42 . repeat_region 345485 345492 . ? . description=dust scaffold_42 . repeat_region 345535 345546 . ? . description=dust scaffold_42 . biological_region 348753 348755 0.999 - . logic_name=eponine scaffold_42 . biological_region 353644 353645 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 347663 349282 . - . ID=Physo136029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420092;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 347663 349282 . - . ID=Physo136029;Parent=Physo136029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 347663 349210 . - 0 ID=Physo136029;Parent=Physo136029;rank=1 scaffold_42 . exon 347663 349282 . - . ID=Physo136029.1;Parent=Physo136029;constitutive=1;ensembl_phase=-1;rank=1 scaffold_42 ensembl protein_coding_gene 350453 351162 . + . ID=Physo136030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420093;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 350453 351162 . + . ID=Physo136030;Parent=Physo136030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 350453 350587 . + 0 ID=Physo136030;Parent=Physo136030;rank=1 scaffold_42 . exon 350453 350587 . + . ID=Physo136030.1;Parent=Physo136030;constitutive=1;rank=1 scaffold_42 . CDS 350740 351162 . + 0 ID=Physo136030;Parent=Physo136030;rank=2 scaffold_42 . exon 350740 351162 . + . ID=Physo136030.2;Parent=Physo136030;constitutive=1;rank=2 scaffold_42 . repeat_region 359301 359334 . ? . description=trf scaffold_42 ensembl protein_coding_gene 362964 365007 . - . ID=Physo136031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420094;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 362964 365007 . - . ID=Physo136031;Parent=Physo136031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 362964 363077 . - 0 ID=Physo136031;Parent=Physo136031;rank=8 scaffold_42 . exon 362964 363077 . - . ID=Physo136031.8;Parent=Physo136031;constitutive=1;rank=8 scaffold_42 . CDS 363245 363361 . - 0 ID=Physo136031;Parent=Physo136031;rank=7 scaffold_42 . exon 363245 363361 . - . ID=Physo136031.7;Parent=Physo136031;constitutive=1;rank=7 scaffold_42 . CDS 363384 363616 . - 0 ID=Physo136031;Parent=Physo136031;rank=6 scaffold_42 . exon 363384 363616 . - . ID=Physo136031.6;Parent=Physo136031;constitutive=1;ensembl_phase=1;rank=6 scaffold_42 . CDS 363673 363726 . - 0 ID=Physo136031;Parent=Physo136031;rank=5 scaffold_42 . CDS 364087 364169 . - 0 ID=Physo136031;Parent=Physo136031;rank=4 scaffold_42 . CDS 364198 364374 . - 0 ID=Physo136031;Parent=Physo136031;rank=3 scaffold_42 . CDS 364698 364885 . - 0 ID=Physo136031;Parent=Physo136031;rank=2 scaffold_42 . CDS 364963 365007 . - 0 ID=Physo136031;Parent=Physo136031;rank=1 scaffold_42 . repeat_region 364771 364862 . ? . description=dust scaffold_42 . repeat_region 365279 365306 . ? . description=dust scaffold_42 . repeat_region 366539 366546 . ? . description=dust scaffold_42 . biological_region 367759 367762 0.999 - . logic_name=eponine scaffold_42 . repeat_region 367796 367803 . ? . description=dust scaffold_42 . biological_region 368547 368549 0.999 + . logic_name=eponine scaffold_42 . biological_region 369898 369901 0.999 - . logic_name=eponine scaffold_42 . repeat_region 371439 371644 . ? . description=dust scaffold_42 . exon 363673 363726 . - . ID=Physo136031.5;Parent=Physo136031;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_42 . exon 364087 364169 . - . ID=Physo136031.4;Parent=Physo136031;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_42 . exon 364198 364374 . - . ID=Physo136031.3;Parent=Physo136031;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_42 . exon 364698 364885 . - . ID=Physo136031.2;Parent=Physo136031;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . exon 364963 365007 . - . ID=Physo136031.1;Parent=Physo136031;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 368050 369624 . + . ID=Physo136032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420095;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 368050 369624 . + . ID=Physo136032;Parent=Physo136032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 368050 368978 . + . ID=Physo136032.1;Parent=Physo136032;constitutive=1;ensembl_phase=-1;rank=1 scaffold_42 . CDS 368094 368978 . + 0 ID=Physo136032;Parent=Physo136032;rank=1 scaffold_42 . CDS 369025 369624 . + 0 ID=Physo136032;Parent=Physo136032;rank=2 scaffold_42 . exon 369025 369624 . + . ID=Physo136032.2;Parent=Physo136032;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 369754 371775 . + . ID=Physo136033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420096;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 369754 371775 . + . ID=Physo136033;Parent=Physo136033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 369754 371404 . + 0 ID=Physo136033;Parent=Physo136033;rank=1 scaffold_42 . exon 369754 371404 . + . ID=Physo136033.1;Parent=Physo136033;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 371663 371775 . + 0 ID=Physo136033;Parent=Physo136033;rank=2 scaffold_42 . exon 371663 371775 . + . ID=Physo136033.2;Parent=Physo136033;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . repeat_region 377228 377259 . ? . description=trf scaffold_42 ensembl protein_coding_gene 378547 379365 . + . ID=Physo136037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420100;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 378547 379365 . + . ID=Physo136037;Parent=Physo136037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 378547 379365 . + 0 ID=Physo136037;Parent=Physo136037;rank=1 scaffold_42 . exon 378547 379365 . + . ID=Physo136037.1;Parent=Physo136037;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 382068 383247 . - . ID=Physo136038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420101;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 382068 383247 . - . ID=Physo136038;Parent=Physo136038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 382068 383073 . - 0 ID=Physo136038;Parent=Physo136038;rank=2 scaffold_42 . exon 382068 383073 . - . ID=Physo136038.2;Parent=Physo136038;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 383225 383247 . - 0 ID=Physo136038;Parent=Physo136038;rank=1 scaffold_42 ensembl protein_coding_gene 374689 375504 . - . ID=Physo157346;biotype=protein_coding;external_name=C_scaffold_42000019;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 374689 375504 . - . ID=Physo157346;Parent=Physo157346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 374689 375504 . - 0 ID=Physo157346;Parent=Physo157346;rank=1 scaffold_42 . exon 374689 375504 . - . ID=Physo157346.1;Parent=Physo157346;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 375672 378158 . - . ID=Physo157347;biotype=protein_coding;external_name=C_scaffold_42000020;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 375672 378158 . - . ID=Physo157347;Parent=Physo157347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 375672 376025 . - 0 ID=Physo157347;Parent=Physo157347;rank=4 scaffold_42 . exon 375672 376025 . - . ID=Physo157347.4;Parent=Physo157347;constitutive=1;rank=4 scaffold_42 . CDS 376185 376475 . - 0 ID=Physo157347;Parent=Physo157347;rank=3 scaffold_42 . exon 376185 376475 . - . ID=Physo157347.3;Parent=Physo157347;constitutive=1;rank=3 scaffold_42 . CDS 376731 377411 . - 0 ID=Physo157347;Parent=Physo157347;rank=2 scaffold_42 . exon 376731 377411 . - . ID=Physo157347.2;Parent=Physo157347;constitutive=1;rank=2 scaffold_42 . CDS 377445 378158 . - 0 ID=Physo157347;Parent=Physo157347;rank=1 scaffold_42 . exon 377445 378158 . - . ID=Physo157347.1;Parent=Physo157347;constitutive=1;rank=1 scaffold_42 . biological_region 385527 385528 0.999 - . logic_name=eponine scaffold_42 . repeat_region 387022 387029 . ? . description=dust scaffold_42 . biological_region 392532 392532 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 383653 384760 . + . ID=Physo108920;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_420014;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 383653 384760 . + . ID=Physo108920;Parent=Physo108920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 383653 383843 . + 0 ID=Physo108920;Parent=Physo108920;rank=1 scaffold_42 . exon 383653 383843 . + . ID=Physo108920.1;Parent=Physo108920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 383926 384403 . + 0 ID=Physo108920;Parent=Physo108920;rank=2 scaffold_42 . exon 383926 384403 . + . ID=Physo108920.2;Parent=Physo108920;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 384482 384544 . + 0 ID=Physo108920;Parent=Physo108920;rank=3 scaffold_42 . exon 384482 384544 . + . ID=Physo108920.3;Parent=Physo108920;constitutive=1;rank=3 scaffold_42 . CDS 384623 384760 . + 0 ID=Physo108920;Parent=Physo108920;rank=4 scaffold_42 . exon 384623 384760 . + . ID=Physo108920.4;Parent=Physo108920;constitutive=1;rank=4 scaffold_42 . exon 383225 383247 . - . ID=Physo136038.1;Parent=Physo136038;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 392826 393794 . + . ID=Physo136043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420106;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 392826 393794 . + . ID=Physo136043;Parent=Physo136043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 392826 393509 . + 0 ID=Physo136043;Parent=Physo136043;rank=1 scaffold_42 . exon 392826 393509 . + . ID=Physo136043.1;Parent=Physo136043;constitutive=1;rank=1 scaffold_42 . CDS 393591 393794 . + 0 ID=Physo136043;Parent=Physo136043;rank=2 scaffold_42 ensembl protein_coding_gene 384963 387981 . - . ID=Physo157350;biotype=protein_coding;external_name=C_scaffold_42000023;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 384963 387981 . - . ID=Physo157350;Parent=Physo157350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 384963 386098 . - 0 ID=Physo157350;Parent=Physo157350;rank=4 scaffold_42 . exon 384963 386098 . - . ID=Physo157350.4;Parent=Physo157350;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 386348 386989 . - 0 ID=Physo157350;Parent=Physo157350;rank=3 scaffold_42 . exon 386348 386989 . - . ID=Physo157350.3;Parent=Physo157350;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 387358 387832 . - 0 ID=Physo157350;Parent=Physo157350;rank=2 scaffold_42 . exon 387358 387832 . - . ID=Physo157350.2;Parent=Physo157350;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 387901 387981 . - 0 ID=Physo157350;Parent=Physo157350;rank=1 scaffold_42 . exon 387901 387981 . - . ID=Physo157350.1;Parent=Physo157350;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 390889 392602 . - . ID=Physo157351;biotype=protein_coding;external_name=C_scaffold_42000024;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 390889 392602 . - . ID=Physo157351;Parent=Physo157351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 390889 391076 . - 0 ID=Physo157351;Parent=Physo157351;rank=5 scaffold_42 . exon 390889 391076 . - . ID=Physo157351.5;Parent=Physo157351;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 . CDS 391575 392058 . - 0 ID=Physo157351;Parent=Physo157351;rank=4 scaffold_42 . exon 391575 392058 . - . ID=Physo157351.4;Parent=Physo157351;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_42 . CDS 392137 392195 . - 0 ID=Physo157351;Parent=Physo157351;rank=3 scaffold_42 . exon 392137 392195 . - . ID=Physo157351.3;Parent=Physo157351;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 392274 392344 . - 0 ID=Physo157351;Parent=Physo157351;rank=2 scaffold_42 . exon 392274 392344 . - . ID=Physo157351.2;Parent=Physo157351;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 392424 392602 . - 0 ID=Physo157351;Parent=Physo157351;rank=1 scaffold_42 . exon 392424 392602 . - . ID=Physo157351.1;Parent=Physo157351;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . repeat_region 400496 400568 . ? . description=trf scaffold_42 . exon 393591 393794 . + . ID=Physo136043.2;Parent=Physo136043;constitutive=1;rank=2 scaffold_42 ensembl protein_coding_gene 397516 400475 . - . ID=Physo136044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420107;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 397516 400475 . - . ID=Physo136044;Parent=Physo136044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 397516 398420 . - . ID=Physo136044.5;Parent=Physo136044;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_42 . CDS 397545 398420 . - 0 ID=Physo136044;Parent=Physo136044;rank=5 scaffold_42 . CDS 398771 399011 . - 0 ID=Physo136044;Parent=Physo136044;rank=4 scaffold_42 . exon 398771 399011 . - . ID=Physo136044.4;Parent=Physo136044;constitutive=1;ensembl_phase=2;rank=4 scaffold_42 . CDS 399076 399453 . - 0 ID=Physo136044;Parent=Physo136044;rank=3 scaffold_42 . exon 399076 399453 . - . ID=Physo136044.3;Parent=Physo136044;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_42 . CDS 399528 400099 . - 0 ID=Physo136044;Parent=Physo136044;rank=2 scaffold_42 . exon 399528 400099 . - . ID=Physo136044.2;Parent=Physo136044;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 400179 400475 . - 0 ID=Physo136044;Parent=Physo136044;rank=1 scaffold_42 . exon 400179 400475 . - . ID=Physo136044.1;Parent=Physo136044;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 394216 395557 . + . ID=Physo157353;biotype=protein_coding;external_name=C_scaffold_42000026;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 394216 395557 . + . ID=Physo157353;Parent=Physo157353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 394216 394306 . + 0 ID=Physo157353;Parent=Physo157353;rank=1 scaffold_42 . exon 394216 394306 . + . ID=Physo157353.1;Parent=Physo157353;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 394334 394650 . + 0 ID=Physo157353;Parent=Physo157353;rank=2 scaffold_42 . exon 394334 394650 . + . ID=Physo157353.2;Parent=Physo157353;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 395194 395557 . + 0 ID=Physo157353;Parent=Physo157353;rank=3 scaffold_42 . exon 395194 395557 . + . ID=Physo157353.3;Parent=Physo157353;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 ensembl protein_coding_gene 395893 397164 . + . ID=Physo157354;biotype=protein_coding;external_name=C_scaffold_42000027;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 395893 397164 . + . ID=Physo157354;Parent=Physo157354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 395893 396200 . + 0 ID=Physo157354;Parent=Physo157354;rank=1 scaffold_42 . exon 395893 396200 . + . ID=Physo157354.1;Parent=Physo157354;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 . CDS 396222 396444 . + 0 ID=Physo157354;Parent=Physo157354;rank=2 scaffold_42 . exon 396222 396444 . + . ID=Physo157354.2;Parent=Physo157354;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 396757 397164 . + 0 ID=Physo157354;Parent=Physo157354;rank=3 scaffold_42 . exon 396757 397164 . + . ID=Physo157354.3;Parent=Physo157354;constitutive=1;rank=3 scaffold_42 . repeat_region 409896 409904 . ? . description=dust scaffold_42 . repeat_region 410655 411113 . - . description=Gypsy-1-I_PI-int scaffold_42 ensembl protein_coding_gene 404520 405257 . - . ID=Physo136045;biotype=protein_coding;description=PsAvh231 [Source:UniProtKB/TrEMBL%3BAcc:E0W560];external_name=estExt_fgenesh1_pg.C_420108;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 404520 405257 . - . ID=Physo136045;Parent=Physo136045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 404520 405257 . - 0 ID=Physo136045;Parent=Physo136045;rank=1 scaffold_42 . exon 404520 405257 . - . ID=Physo136045.1;Parent=Physo136045;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 408109 408636 . + . ID=Physo136046;biotype=protein_coding;description=PsAvh35 [Source:UniProtKB/TrEMBL%3BAcc:E0W561];external_name=estExt_fgenesh1_pg.C_420109;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 408109 408636 . + . ID=Physo136046;Parent=Physo136046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 408109 408636 . + 0 ID=Physo136046;Parent=Physo136046;rank=1 scaffold_42 . exon 408109 408636 . + . ID=Physo136046.1;Parent=Physo136046;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 410005 415058 . - . ID=Physo136047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420110;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 410005 415058 . - . ID=Physo136047;Parent=Physo136047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 410005 411551 . - 0 ID=Physo136047;Parent=Physo136047;rank=2 scaffold_42 . exon 410005 411551 . - . ID=Physo136047.2;Parent=Physo136047;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 411767 415058 . - 0 ID=Physo136047;Parent=Physo136047;rank=1 scaffold_42 . exon 411767 415058 . - . ID=Physo136047.1;Parent=Physo136047;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . biological_region 414091 414095 0.999 - . logic_name=eponine scaffold_42 . biological_region 415569 415578 0.999 + . logic_name=eponine scaffold_42 . repeat_region 415738 415791 . ? . description=trf scaffold_42 . repeat_region 419351 419456 . ? . description=trf scaffold_42 ensembl protein_coding_gene 418118 419149 . - . ID=Physo136048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420111;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 418118 419149 . - . ID=Physo136048;Parent=Physo136048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 418118 419149 . - 0 ID=Physo136048;Parent=Physo136048;rank=1 scaffold_42 . exon 418118 419149 . - . ID=Physo136048.1;Parent=Physo136048;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 420251 421853 . + . ID=Physo136049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420112;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 420251 421853 . + . ID=Physo136049;Parent=Physo136049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 420251 420550 . + 0 ID=Physo136049;Parent=Physo136049;rank=1 scaffold_42 . exon 420251 420550 . + . ID=Physo136049.1;Parent=Physo136049;constitutive=1;rank=1 scaffold_42 . CDS 420788 420987 . + 0 ID=Physo136049;Parent=Physo136049;rank=2 scaffold_42 . exon 420788 420987 . + . ID=Physo136049.2;Parent=Physo136049;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_42 . CDS 421119 421612 . + 0 ID=Physo136049;Parent=Physo136049;rank=3 scaffold_42 . exon 421119 421612 . + . ID=Physo136049.3;Parent=Physo136049;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 421675 421853 . + 0 ID=Physo136049;Parent=Physo136049;rank=4 scaffold_42 . exon 421675 421853 . + . ID=Physo136049.4;Parent=Physo136049;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . repeat_region 425316 425323 . ? . description=dust scaffold_42 ensembl protein_coding_gene 428332 429192 . - . ID=Physo136050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420113;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 428332 429192 . - . ID=Physo136050;Parent=Physo136050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 428332 428647 . - . ID=Physo136050.2;Parent=Physo136050;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_42 . exon 428718 429192 . - . ID=Physo136050.1;Parent=Physo136050;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_42 . CDS 428761 429141 . - 0 ID=Physo136050;Parent=Physo136050;rank=1 scaffold_42 . repeat_region 432942 432966 . ? . description=trf scaffold_42 . repeat_region 432942 432966 . ? . description=trf scaffold_42 . repeat_region 438325 438533 . ? . description=trf scaffold_42 ensembl protein_coding_gene 436713 437055 . - . ID=Physo136051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420114;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 436713 437055 . - . ID=Physo136051;Parent=Physo136051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 436713 436721 . - 0 ID=Physo136051;Parent=Physo136051;rank=2 scaffold_42 . exon 436713 436721 . - . ID=Physo136051.2;Parent=Physo136051;constitutive=1;rank=2 scaffold_42 . CDS 436759 437055 . - 0 ID=Physo136051;Parent=Physo136051;rank=1 scaffold_42 . exon 436759 437055 . - . ID=Physo136051.1;Parent=Physo136051;constitutive=1;rank=1 scaffold_42 . repeat_region 444576 444583 . ? . description=dust scaffold_42 . biological_region 446434 446436 0.999 + . logic_name=eponine scaffold_42 . biological_region 446793 446795 0.999 + . logic_name=eponine scaffold_42 . biological_region 446862 446865 0.999 + . logic_name=eponine scaffold_42 . biological_region 446928 446931 0.999 - . logic_name=eponine scaffold_42 . repeat_region 447461 448748 . + . description=GypsyPi-1c_I-int scaffold_42 . biological_region 449189 449192 0.999 + . logic_name=eponine scaffold_42 . biological_region 449884 449887 0.999 + . logic_name=eponine scaffold_42 . biological_region 450575 450578 0.999 + . logic_name=eponine scaffold_42 . biological_region 451783 451786 0.999 + . logic_name=eponine scaffold_42 . biological_region 451861 451862 0.999 + . logic_name=eponine scaffold_42 . biological_region 451871 451874 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 442861 444063 . - . ID=Physo136052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420115;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 442861 444063 . - . ID=Physo136052;Parent=Physo136052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 442861 444063 . - 0 ID=Physo136052;Parent=Physo136052;rank=1 scaffold_42 . exon 442861 444063 . - . ID=Physo136052.1;Parent=Physo136052;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 446371 451444 . + . ID=Physo136053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420116;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 446371 451444 . + . ID=Physo136053;Parent=Physo136053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 446371 447382 . + 0 ID=Physo136053;Parent=Physo136053;rank=1 scaffold_42 . exon 446371 447382 . + . ID=Physo136053.1;Parent=Physo136053;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . CDS 447418 447858 . + 0 ID=Physo136053;Parent=Physo136053;rank=2 scaffold_42 . exon 447418 447858 . + . ID=Physo136053.2;Parent=Physo136053;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 447914 450303 . + 0 ID=Physo136053;Parent=Physo136053;rank=3 scaffold_42 . exon 447914 450303 . + . ID=Physo136053.3;Parent=Physo136053;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 450645 450972 . + 0 ID=Physo136053;Parent=Physo136053;rank=4 scaffold_42 . exon 450645 450972 . + . ID=Physo136053.4;Parent=Physo136053;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_42 . CDS 451011 451444 . + 0 ID=Physo136053;Parent=Physo136053;rank=5 scaffold_42 . exon 451011 451444 . + . ID=Physo136053.5;Parent=Physo136053;constitutive=1;ensembl_phase=1;rank=5 scaffold_42 ensembl protein_coding_gene 451879 456200 . - . ID=Physo136054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420117;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 451879 456200 . - . ID=Physo136054;Parent=Physo136054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 451879 452426 . - 0 ID=Physo136054;Parent=Physo136054;rank=4 scaffold_42 . exon 451879 452426 . - . ID=Physo136054.4;Parent=Physo136054;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 452468 452741 . - 0 ID=Physo136054;Parent=Physo136054;rank=3 scaffold_42 . CDS 452785 454218 . - 0 ID=Physo136054;Parent=Physo136054;rank=2 scaffold_42 . CDS 454563 456200 . - 0 ID=Physo136054;Parent=Physo136054;rank=1 scaffold_42 . repeat_region 453422 453487 . ? . description=trf scaffold_42 . repeat_region 458634 458653 . ? . description=trf scaffold_42 . repeat_region 458937 459024 . ? . description=trf scaffold_42 . exon 452468 452741 . - . ID=Physo136054.3;Parent=Physo136054;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . exon 452785 454218 . - . ID=Physo136054.2;Parent=Physo136054;constitutive=1;rank=2 scaffold_42 . exon 454563 456200 . - . ID=Physo136054.1;Parent=Physo136054;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 457596 459777 . - . ID=Physo136055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420118;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 457596 459777 . - . ID=Physo136055;Parent=Physo136055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 457596 457633 . - 0 ID=Physo136055;Parent=Physo136055;rank=2 scaffold_42 . exon 457596 457633 . - . ID=Physo136055.2;Parent=Physo136055;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 457722 459777 . - 0 ID=Physo136055;Parent=Physo136055;rank=1 scaffold_42 . exon 457722 459777 . - . ID=Physo136055.1;Parent=Physo136055;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 . repeat_region 464771 464779 . ? . description=dust scaffold_42 . biological_region 467307 467312 0.999 + . logic_name=eponine scaffold_42 . repeat_region 468140 468147 . ? . description=dust scaffold_42 . repeat_region 468315 468375 . ? . description=dust scaffold_42 . repeat_region 471337 471344 . ? . description=dust scaffold_42 . repeat_region 474264 474405 . + . description=Polinton-1_PI scaffold_42 . repeat_region 482800 482861 . ? . description=dust scaffold_42 . repeat_region 483030 483037 . ? . description=dust scaffold_42 . biological_region 483866 483871 0.999 - . logic_name=eponine scaffold_42 . repeat_region 487540 487583 . ? . description=trf scaffold_42 . biological_region 487616 487617 0.999 + . logic_name=eponine scaffold_42 . biological_region 487667 487669 0.999 - . logic_name=eponine scaffold_42 . biological_region 489109 489111 0.999 - . logic_name=eponine scaffold_42 . repeat_region 489248 489304 . ? . description=trf scaffold_42 . repeat_region 489251 489300 . ? . description=trf scaffold_42 . repeat_region 489340 489388 . ? . description=trf scaffold_42 ensembl protein_coding_gene 486455 486799 . - . ID=Physo136056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420119;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 486455 486799 . - . ID=Physo136056;Parent=Physo136056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 486455 486799 . - 0 ID=Physo136056;Parent=Physo136056;rank=1 scaffold_42 . exon 486455 486799 . - . ID=Physo136056.1;Parent=Physo136056;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 487265 487747 . + . ID=Physo136057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420120;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 487265 487747 . + . ID=Physo136057;Parent=Physo136057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 487265 487747 . + 0 ID=Physo136057;Parent=Physo136057;rank=1 scaffold_42 . exon 487265 487747 . + . ID=Physo136057.1;Parent=Physo136057;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 489170 489598 . + . ID=Physo136058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420121;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 489170 489598 . + . ID=Physo136058;Parent=Physo136058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 489170 489598 . + 0 ID=Physo136058;Parent=Physo136058;rank=1 scaffold_42 . exon 489170 489598 . + . ID=Physo136058.1;Parent=Physo136058;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 498172 499109 . - . ID=Physo136059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420122;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 498172 499109 . - . ID=Physo136059;Parent=Physo136059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 498172 498419 . - 0 ID=Physo136059;Parent=Physo136059;rank=3 scaffold_42 . exon 498172 498419 . - . ID=Physo136059.3;Parent=Physo136059;constitutive=1;ensembl_phase=1;rank=3 scaffold_42 . CDS 498501 498882 . - 0 ID=Physo136059;Parent=Physo136059;rank=2 scaffold_42 . exon 498501 498882 . - . ID=Physo136059.2;Parent=Physo136059;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_42 . CDS 498933 499109 . - 0 ID=Physo136059;Parent=Physo136059;rank=1 scaffold_42 . exon 498933 499109 . - . ID=Physo136059.1;Parent=Physo136059;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 499873 500382 . - . ID=Physo136060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420123;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 499873 500382 . - . ID=Physo136060;Parent=Physo136060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 499873 500382 . - 0 ID=Physo136060;Parent=Physo136060;rank=1 scaffold_42 . exon 499873 500382 . - . ID=Physo136060.1;Parent=Physo136060;constitutive=1;rank=1 scaffold_42 . biological_region 501351 501353 0.999 + . logic_name=eponine scaffold_42 . biological_region 501920 501923 0.999 - . logic_name=eponine scaffold_42 . biological_region 502066 502068 0.999 - . logic_name=eponine scaffold_42 . biological_region 502089 502091 0.999 - . logic_name=eponine scaffold_42 . biological_region 502143 502148 0.999 + . logic_name=eponine scaffold_42 . repeat_region 502195 502296 . ? . description=trf scaffold_42 . repeat_region 502948 502960 . ? . description=dust scaffold_42 . repeat_region 504560 504567 . ? . description=dust scaffold_42 . repeat_region 506802 507096 . ? . description=trf scaffold_42 . repeat_region 507468 507536 . ? . description=trf scaffold_42 . biological_region 507478 507480 0.999 + . logic_name=eponine scaffold_42 . biological_region 507540 507543 0.999 - . logic_name=eponine scaffold_42 . biological_region 507577 507578 0.999 - . logic_name=eponine scaffold_42 . biological_region 507646 507646 0.999 + . logic_name=eponine scaffold_42 . repeat_region 507943 508001 . ? . description=trf scaffold_42 . biological_region 507972 507973 0.999 - . logic_name=eponine scaffold_42 . biological_region 508007 508008 0.999 - . logic_name=eponine scaffold_42 . biological_region 508028 508033 0.999 + . logic_name=eponine scaffold_42 . biological_region 508059 508062 0.999 + . logic_name=eponine scaffold_42 . repeat_region 508112 508155 . ? . description=trf scaffold_42 . biological_region 508156 508161 0.999 - . logic_name=eponine scaffold_42 . biological_region 509948 509950 0.999 + . logic_name=eponine scaffold_42 . repeat_region 510629 510644 . ? . description=dust scaffold_42 ensembl protein_coding_gene 513146 519747 . + . ID=Physo136061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420124;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 513146 519747 . + . ID=Physo136061;Parent=Physo136061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 513146 513382 . + . ID=Physo136061.1;Parent=Physo136061;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_42 . CDS 513219 513382 . + 0 ID=Physo136061;Parent=Physo136061;rank=1 scaffold_42 . CDS 513432 513876 . + 0 ID=Physo136061;Parent=Physo136061;rank=2 scaffold_42 . exon 513432 513876 . + . ID=Physo136061.2;Parent=Physo136061;constitutive=1;ensembl_phase=2;rank=2 scaffold_42 . CDS 513937 514110 . + 0 ID=Physo136061;Parent=Physo136061;rank=3 scaffold_42 . exon 513937 514110 . + . ID=Physo136061.3;Parent=Physo136061;constitutive=1;rank=3 scaffold_42 . CDS 514157 514726 . + 0 ID=Physo136061;Parent=Physo136061;rank=4 scaffold_42 . exon 514157 514726 . + . ID=Physo136061.4;Parent=Physo136061;constitutive=1;rank=4 scaffold_42 . CDS 514974 515487 . + 0 ID=Physo136061;Parent=Physo136061;rank=5 scaffold_42 . exon 514974 515487 . + . ID=Physo136061.5;Parent=Physo136061;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_42 . CDS 515521 516846 . + 0 ID=Physo136061;Parent=Physo136061;rank=6 scaffold_42 . exon 515521 516846 . + . ID=Physo136061.6;Parent=Physo136061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_42 . CDS 516985 517221 . + 0 ID=Physo136061;Parent=Physo136061;rank=7 scaffold_42 . exon 516985 517221 . + . ID=Physo136061.7;Parent=Physo136061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_42 . CDS 517572 518063 . + 0 ID=Physo136061;Parent=Physo136061;rank=8 scaffold_42 . exon 517572 518063 . + . ID=Physo136061.8;Parent=Physo136061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_42 . CDS 518262 518609 . + 0 ID=Physo136061;Parent=Physo136061;rank=9 scaffold_42 . exon 518262 518609 . + . ID=Physo136061.9;Parent=Physo136061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_42 . CDS 518640 518858 . + 0 ID=Physo136061;Parent=Physo136061;rank=10 scaffold_42 . exon 518640 518858 . + . ID=Physo136061.10;Parent=Physo136061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_42 . CDS 519150 519327 . + 0 ID=Physo136061;Parent=Physo136061;rank=11 scaffold_42 . exon 519150 519327 . + . ID=Physo136061.11;Parent=Physo136061;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_42 . CDS 519533 519548 . + 0 ID=Physo136061;Parent=Physo136061;rank=12 scaffold_42 . exon 519533 519548 . + . ID=Physo136061.12;Parent=Physo136061;constitutive=1;ensembl_phase=2;rank=12 scaffold_42 . CDS 519625 519747 . + 0 ID=Physo136061;Parent=Physo136061;rank=13 scaffold_42 . exon 519625 519747 . + . ID=Physo136061.13;Parent=Physo136061;constitutive=1;rank=13 scaffold_42 . biological_region 522109 522110 0.999 + . logic_name=eponine scaffold_42 . biological_region 523080 523086 0.999 + . logic_name=eponine scaffold_42 . biological_region 524030 524030 0.999 - . logic_name=eponine scaffold_42 . repeat_region 527623 527707 . + . description=(CTATT)n scaffold_42 . repeat_region 527641 527687 . ? . description=trf scaffold_42 . repeat_region 527641 527707 . ? . description=dust scaffold_42 . biological_region 530383 530384 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 522794 523624 . - . ID=Physo136062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420125;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 522794 523624 . - . ID=Physo136062;Parent=Physo136062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 522794 522843 . - 0 ID=Physo136062;Parent=Physo136062;rank=4 scaffold_42 . exon 522794 522843 . - . ID=Physo136062.4;Parent=Physo136062;constitutive=1;ensembl_phase=1;rank=4 scaffold_42 . CDS 522917 522944 . - 0 ID=Physo136062;Parent=Physo136062;rank=3 scaffold_42 . exon 522917 522944 . - . ID=Physo136062.3;Parent=Physo136062;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_42 . CDS 523154 523323 . - 0 ID=Physo136062;Parent=Physo136062;rank=2 scaffold_42 . exon 523154 523323 . - . ID=Physo136062.2;Parent=Physo136062;constitutive=1;ensembl_phase=1;rank=2 scaffold_42 . CDS 523393 523624 . - 0 ID=Physo136062;Parent=Physo136062;rank=1 scaffold_42 . exon 523393 523624 . - . ID=Physo136062.1;Parent=Physo136062;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_42 ensembl protein_coding_gene 524544 525800 . - . ID=Physo136063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420126;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 524544 525800 . - . ID=Physo136063;Parent=Physo136063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 524544 524547 . - 0 ID=Physo136063;Parent=Physo136063;rank=3 scaffold_42 . exon 524544 524547 . - . ID=Physo136063.3;Parent=Physo136063;constitutive=1;ensembl_phase=2;rank=3 scaffold_42 . CDS 524892 525395 . - 0 ID=Physo136063;Parent=Physo136063;rank=2 scaffold_42 . exon 524892 525395 . - . ID=Physo136063.2;Parent=Physo136063;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_42 . CDS 525460 525800 . - 0 ID=Physo136063;Parent=Physo136063;rank=1 scaffold_42 . exon 525460 525800 . - . ID=Physo136063.1;Parent=Physo136063;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_42 ensembl protein_coding_gene 529245 530783 . - . ID=Physo136064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420127;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 529245 530783 . - . ID=Physo136064;Parent=Physo136064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 529245 530783 . - 0 ID=Physo136064;Parent=Physo136064;rank=1 scaffold_42 . exon 529245 530783 . - . ID=Physo136064.1;Parent=Physo136064;constitutive=1;rank=1 scaffold_42 ensembl protein_coding_gene 536730 538270 . + . ID=Physo136065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420128;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 536730 538270 . + . ID=Physo136065;Parent=Physo136065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 536730 537809 . + 0 ID=Physo136065;Parent=Physo136065;rank=1 scaffold_42 . exon 536730 537809 . + . ID=Physo136065.1;Parent=Physo136065;constitutive=1;rank=1 scaffold_42 . CDS 537887 538270 . + 0 ID=Physo136065;Parent=Physo136065;rank=2 scaffold_42 . exon 537887 538270 . + . ID=Physo136065.2;Parent=Physo136065;constitutive=1;rank=2 scaffold_42 . repeat_region 540964 541000 . ? . description=trf scaffold_42 . repeat_region 542956 542979 . ? . description=trf scaffold_42 . biological_region 545242 545245 0.999 - . logic_name=eponine scaffold_42 . biological_region 545259 545263 0.999 - . logic_name=eponine scaffold_42 . biological_region 547549 547552 0.999 - . logic_name=eponine scaffold_42 . biological_region 547628 547634 0.999 + . logic_name=eponine scaffold_42 . biological_region 547630 547631 0.999 - . logic_name=eponine scaffold_42 . biological_region 549062 549070 0.999 + . logic_name=eponine scaffold_42 ensembl protein_coding_gene 545736 546965 . + . ID=Physo117377;biotype=protein_coding;external_name=estExt_Genewise1.C_420013;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 545736 546965 . + . ID=Physo117377;Parent=Physo117377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . exon 545736 546735 . + . ID=Physo117377.1;Parent=Physo117377;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_42 . CDS 545748 546735 . + 0 ID=Physo117377;Parent=Physo117377;rank=1 scaffold_42 . CDS 546774 546964 . + 0 ID=Physo117377;Parent=Physo117377;rank=2 scaffold_42 . exon 546774 546965 . + . ID=Physo117377.2;Parent=Physo117377;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_42 ensembl protein_coding_gene 549041 550094 . + . ID=Physo136067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_420130;logic_name=jgi_physo1_1 scaffold_42 ensembl transcript 549041 550094 . + . ID=Physo136067;Parent=Physo136067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_42 . CDS 549041 550093 . + 0 ID=Physo136067;Parent=Physo136067;rank=1 scaffold_42 . exon 549041 550094 . + . ID=Physo136067.1;Parent=Physo136067;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_40 1 554047 scaffold_40 . repeat_region 1 1054 . ? . description=trf scaffold_40 . biological_region 1 3 0.999 + . logic_name=eponine scaffold_40 . biological_region 15 21 0.999 + . logic_name=eponine scaffold_40 . biological_region 245 245 0.999 - . logic_name=eponine scaffold_40 . repeat_region 296 352 . ? . description=dust scaffold_40 . repeat_region 707 753 . ? . description=dust scaffold_40 . repeat_region 3980 3987 . ? . description=dust scaffold_40 . biological_region 5005 5006 0.999 - . logic_name=eponine scaffold_40 ensembl tRNA_gene 618 687 . - . ID=EPrPSOG00000000145;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_40 ensembl transcript 618 687 . - . ID=EPrPSOT00000000145;Parent=EPrPSOG00000000145;biotype=tRNA;logic_name=ncrna_eg scaffold_40 ensembl tRNA_gene 222 292 . - . ID=EPrPSOG00000000287;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_40 ensembl transcript 222 292 . - . ID=EPrPSOT00000000287;Parent=EPrPSOG00000000287;biotype=tRNA;logic_name=ncrna_eg scaffold_40 . exon 618 687 . - . ID=EPrPSOE00000000145;Parent=EPrPSOT00000000145;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . exon 222 292 . - . ID=EPrPSOE00000000287;Parent=EPrPSOT00000000287;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 8540 10204 . + . ID=Physo108891;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_400001;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 8540 10204 . + . ID=Physo108891;Parent=Physo108891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 8540 9898 . + 0 ID=Physo108891;Parent=Physo108891;rank=1 scaffold_40 . exon 8540 9898 . + . ID=Physo108891.1;Parent=Physo108891;constitutive=1;rank=1 scaffold_40 . CDS 9947 10204 . + 0 ID=Physo108891;Parent=Physo108891;rank=2 scaffold_40 ensembl protein_coding_gene 4942 6666 . + . ID=Physo135664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400001;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 4942 6666 . + . ID=Physo135664;Parent=Physo135664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 4942 5109 . + . ID=Physo135664.1;Parent=Physo135664;constitutive=1;ensembl_phase=-1;rank=1 scaffold_40 . CDS 4981 5109 . + 0 ID=Physo135664;Parent=Physo135664;rank=1 scaffold_40 . CDS 5139 6605 . + 0 ID=Physo135664;Parent=Physo135664;rank=2 scaffold_40 . exon 5139 6666 . + . ID=Physo135664.2;Parent=Physo135664;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_40 . exon 9947 10204 . + . ID=Physo108891.2;Parent=Physo108891;constitutive=1;rank=2 scaffold_40 ensembl protein_coding_gene 16399 17027 . + . ID=Physo108892;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_400002;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 16399 17027 . + . ID=Physo108892;Parent=Physo108892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 16399 16835 . + . ID=Physo108892.1;Parent=Physo108892;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_40 . CDS 16400 16835 . + 0 ID=Physo108892;Parent=Physo108892;rank=1 scaffold_40 . CDS 16912 17027 . + 0 ID=Physo108892;Parent=Physo108892;rank=2 scaffold_40 . exon 16912 17027 . + . ID=Physo108892.2;Parent=Physo108892;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 ensembl protein_coding_gene 10484 12248 . - . ID=Physo135666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400003;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 10484 12248 . - . ID=Physo135666;Parent=Physo135666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 10484 10489 . - 0 ID=Physo135666;Parent=Physo135666;rank=4 scaffold_40 . exon 10484 10489 . - . ID=Physo135666.4;Parent=Physo135666;constitutive=1;rank=4 scaffold_40 . CDS 10609 11232 . - 0 ID=Physo135666;Parent=Physo135666;rank=3 scaffold_40 . exon 10609 11232 . - . ID=Physo135666.3;Parent=Physo135666;constitutive=1;rank=3 scaffold_40 . CDS 11264 12079 . - 0 ID=Physo135666;Parent=Physo135666;rank=2 scaffold_40 . exon 11264 12079 . - . ID=Physo135666.2;Parent=Physo135666;constitutive=1;rank=2 scaffold_40 . CDS 12153 12248 . - 0 ID=Physo135666;Parent=Physo135666;rank=1 scaffold_40 . exon 12153 12248 . - . ID=Physo135666.1;Parent=Physo135666;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 13424 15234 . - . ID=Physo135667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400004;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 13424 15234 . - . ID=Physo135667;Parent=Physo135667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 13424 13945 . - 0 ID=Physo135667;Parent=Physo135667;rank=3 scaffold_40 . exon 13424 13945 . - . ID=Physo135667.3;Parent=Physo135667;constitutive=1;rank=3 scaffold_40 . CDS 13995 14129 . - 0 ID=Physo135667;Parent=Physo135667;rank=2 scaffold_40 . exon 13995 14129 . - . ID=Physo135667.2;Parent=Physo135667;constitutive=1;rank=2 scaffold_40 . CDS 14218 15234 . - 0 ID=Physo135667;Parent=Physo135667;rank=1 scaffold_40 . exon 14218 15234 . - . ID=Physo135667.1;Parent=Physo135667;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 17319 18407 . - . ID=Physo135669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400006;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 17319 18407 . - . ID=Physo135669;Parent=Physo135669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 17319 18407 . - 0 ID=Physo135669;Parent=Physo135669;rank=1 scaffold_40 . exon 17319 18407 . - . ID=Physo135669.1;Parent=Physo135669;constitutive=1;rank=1 scaffold_40 . biological_region 23199 23208 0.999 + . logic_name=eponine scaffold_40 . biological_region 23242 23245 0.999 - . logic_name=eponine scaffold_40 . biological_region 23274 23274 0.999 - . logic_name=eponine scaffold_40 . biological_region 26495 26500 0.999 + . logic_name=eponine scaffold_40 ensembl protein_coding_gene 23316 23585 . - . ID=Physo117233;biotype=protein_coding;external_name=estExt_Genewise1.C_400087;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 23316 23585 . - . ID=Physo117233;Parent=Physo117233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 23316 23348 . - 0 ID=Physo117233;Parent=Physo117233;rank=2 scaffold_40 . exon 23316 23348 . - . ID=Physo117233.2;Parent=Physo117233;constitutive=1;rank=2 scaffold_40 . CDS 23442 23585 . - 0 ID=Physo117233;Parent=Physo117233;rank=1 scaffold_40 . exon 23442 23585 . - . ID=Physo117233.1;Parent=Physo117233;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 22512 23279 . - . ID=Physo135670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400007;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 22512 23279 . - . ID=Physo135670;Parent=Physo135670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 22512 22525 . - 0 ID=Physo135670;Parent=Physo135670;rank=4 scaffold_40 . exon 22512 22525 . - . ID=Physo135670.4;Parent=Physo135670;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 . CDS 22592 22745 . - 0 ID=Physo135670;Parent=Physo135670;rank=3 scaffold_40 . exon 22592 22745 . - . ID=Physo135670.3;Parent=Physo135670;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_40 . CDS 22813 22918 . - 0 ID=Physo135670;Parent=Physo135670;rank=2 scaffold_40 . exon 22813 22918 . - . ID=Physo135670.2;Parent=Physo135670;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 22996 23279 . - 0 ID=Physo135670;Parent=Physo135670;rank=1 scaffold_40 . exon 22996 23279 . - . ID=Physo135670.1;Parent=Physo135670;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 23736 24653 . + . ID=Physo135671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400008;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 23736 24653 . + . ID=Physo135671;Parent=Physo135671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 23736 24653 . + 0 ID=Physo135671;Parent=Physo135671;rank=1 scaffold_40 . exon 23736 24653 . + . ID=Physo135671.1;Parent=Physo135671;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 25107 26555 . - . ID=Physo157247;biotype=protein_coding;external_name=C_scaffold_40000001;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 25107 26555 . - . ID=Physo157247;Parent=Physo157247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 25107 25117 . - 0 ID=Physo157247;Parent=Physo157247;rank=6 scaffold_40 . exon 25107 25117 . - . ID=Physo157247.6;Parent=Physo157247;constitutive=1;ensembl_phase=1;rank=6 scaffold_40 . CDS 25241 25319 . - 0 ID=Physo157247;Parent=Physo157247;rank=5 scaffold_40 . exon 25241 25319 . - . ID=Physo157247.5;Parent=Physo157247;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_40 . CDS 25399 25991 . - 0 ID=Physo157247;Parent=Physo157247;rank=4 scaffold_40 . exon 25399 25991 . - . ID=Physo157247.4;Parent=Physo157247;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 . CDS 26171 26232 . - 0 ID=Physo157247;Parent=Physo157247;rank=3 scaffold_40 . exon 26171 26232 . - . ID=Physo157247.3;Parent=Physo157247;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 26298 26363 . - 0 ID=Physo157247;Parent=Physo157247;rank=2 scaffold_40 . exon 26298 26363 . - . ID=Physo157247.2;Parent=Physo157247;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_40 . CDS 26431 26555 . - 0 ID=Physo157247;Parent=Physo157247;rank=1 scaffold_40 . exon 26431 26555 . - . ID=Physo157247.1;Parent=Physo157247;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 26771 27397 . + . ID=Physo157250;biotype=protein_coding;description=PsSNEL5 [Source:UniProtKB/TrEMBL%3BAcc:E0W550];external_name=C_scaffold_40000004;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 26771 27397 . + . ID=Physo157250;Parent=Physo157250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 26771 26866 . + 0 ID=Physo157250;Parent=Physo157250;rank=1 scaffold_40 . exon 26771 26866 . + . ID=Physo157250.1;Parent=Physo157250;constitutive=1;rank=1 scaffold_40 . CDS 26906 27397 . + 0 ID=Physo157250;Parent=Physo157250;rank=2 scaffold_40 . exon 26906 27397 . + . ID=Physo157250.2;Parent=Physo157250;constitutive=1;rank=2 scaffold_40 ensembl protein_coding_gene 27518 29346 . - . ID=Physo157252;biotype=protein_coding;external_name=C_scaffold_40000006;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 27518 29346 . - . ID=Physo157252;Parent=Physo157252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 27518 27591 . - 0 ID=Physo157252;Parent=Physo157252;rank=3 scaffold_40 . exon 27518 27591 . - . ID=Physo157252.3;Parent=Physo157252;constitutive=1;ensembl_phase=1;rank=3 scaffold_40 . CDS 27685 27965 . - 0 ID=Physo157252;Parent=Physo157252;rank=2 scaffold_40 . exon 27685 27965 . - . ID=Physo157252.2;Parent=Physo157252;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 28025 29346 . - 0 ID=Physo157252;Parent=Physo157252;rank=1 scaffold_40 . exon 28025 29346 . - . ID=Physo157252.1;Parent=Physo157252;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . repeat_region 36540 36547 . ? . description=dust scaffold_40 . repeat_region 37524 37551 . ? . description=dust scaffold_40 . repeat_region 37640 37647 . ? . description=dust scaffold_40 . repeat_region 38319 38360 . ? . description=dust scaffold_40 . repeat_region 38319 38360 . ? . description=trf scaffold_40 ensembl protein_coding_gene 37549 38437 . - . ID=Physo108893;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_400003;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 37549 38437 . - . ID=Physo108893;Parent=Physo108893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 37549 38099 . - . ID=Physo108893.2;Parent=Physo108893;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_40 . CDS 37656 38099 . - 0 ID=Physo108893;Parent=Physo108893;rank=2 scaffold_40 . CDS 38425 38427 . - 0 ID=Physo108893;Parent=Physo108893;rank=1 scaffold_40 . exon 38425 38437 . - . ID=Physo108893.1;Parent=Physo108893;constitutive=1;ensembl_phase=-1;rank=1 scaffold_40 ensembl protein_coding_gene 35815 36749 . - . ID=Physo135675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400012;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 35815 36749 . - . ID=Physo135675;Parent=Physo135675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 35815 35850 . - 0 ID=Physo135675;Parent=Physo135675;rank=4 scaffold_40 . exon 35815 35850 . - . ID=Physo135675.4;Parent=Physo135675;constitutive=1;rank=4 scaffold_40 . CDS 35892 36149 . - 0 ID=Physo135675;Parent=Physo135675;rank=3 scaffold_40 . exon 35892 36149 . - . ID=Physo135675.3;Parent=Physo135675;constitutive=1;rank=3 scaffold_40 . CDS 36216 36395 . - 0 ID=Physo135675;Parent=Physo135675;rank=2 scaffold_40 . exon 36216 36395 . - . ID=Physo135675.2;Parent=Physo135675;constitutive=1;rank=2 scaffold_40 . CDS 36630 36749 . - 0 ID=Physo135675;Parent=Physo135675;rank=1 scaffold_40 . exon 36630 36749 . - . ID=Physo135675.1;Parent=Physo135675;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 30195 31103 . + . ID=Physo157253;biotype=protein_coding;external_name=C_scaffold_40000007;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 30195 31103 . + . ID=Physo157253;Parent=Physo157253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 30195 30386 . + 0 ID=Physo157253;Parent=Physo157253;rank=1 scaffold_40 . exon 30195 30386 . + . ID=Physo157253.1;Parent=Physo157253;constitutive=1;rank=1 scaffold_40 . CDS 30429 31103 . + 0 ID=Physo157253;Parent=Physo157253;rank=2 scaffold_40 . exon 30429 31103 . + . ID=Physo157253.2;Parent=Physo157253;constitutive=1;rank=2 scaffold_40 ensembl protein_coding_gene 38705 42570 . + . ID=Physo157255;biotype=protein_coding;external_name=C_scaffold_40000009;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 38705 42570 . + . ID=Physo157255;Parent=Physo157255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 38705 38965 . + 0 ID=Physo157255;Parent=Physo157255;rank=1 scaffold_40 . exon 38705 38965 . + . ID=Physo157255.1;Parent=Physo157255;constitutive=1;rank=1 scaffold_40 . CDS 39023 39289 . + 0 ID=Physo157255;Parent=Physo157255;rank=2 scaffold_40 . exon 39023 39289 . + . ID=Physo157255.2;Parent=Physo157255;constitutive=1;rank=2 scaffold_40 . CDS 39350 40586 . + 0 ID=Physo157255;Parent=Physo157255;rank=3 scaffold_40 . exon 39350 40586 . + . ID=Physo157255.3;Parent=Physo157255;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_40 . CDS 40626 40729 . + 0 ID=Physo157255;Parent=Physo157255;rank=4 scaffold_40 . CDS 40797 40907 . + 0 ID=Physo157255;Parent=Physo157255;rank=5 scaffold_40 . CDS 40966 41036 . + 0 ID=Physo157255;Parent=Physo157255;rank=6 scaffold_40 . CDS 41129 41275 . + 0 ID=Physo157255;Parent=Physo157255;rank=7 scaffold_40 . CDS 41762 41817 . + 0 ID=Physo157255;Parent=Physo157255;rank=8 scaffold_40 . CDS 41884 42104 . + 0 ID=Physo157255;Parent=Physo157255;rank=9 scaffold_40 . CDS 42172 42243 . + 0 ID=Physo157255;Parent=Physo157255;rank=10 scaffold_40 . CDS 42312 42353 . + 0 ID=Physo157255;Parent=Physo157255;rank=11 scaffold_40 . CDS 42565 42570 . + 0 ID=Physo157255;Parent=Physo157255;rank=12 scaffold_40 . biological_region 46631 46633 0.999 + . logic_name=eponine scaffold_40 ensembl protein_coding_gene 42610 44466 . + . ID=Physo135678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400015;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 42610 44466 . + . ID=Physo135678;Parent=Physo135678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 42610 42684 . + 0 ID=Physo135678;Parent=Physo135678;rank=1 scaffold_40 . exon 42610 42684 . + . ID=Physo135678.1;Parent=Physo135678;constitutive=1;rank=1 scaffold_40 . CDS 42955 43746 . + 0 ID=Physo135678;Parent=Physo135678;rank=2 scaffold_40 . exon 42955 43746 . + . ID=Physo135678.2;Parent=Physo135678;constitutive=1;rank=2 scaffold_40 . CDS 43849 44466 . + 0 ID=Physo135678;Parent=Physo135678;rank=3 scaffold_40 . exon 43849 44466 . + . ID=Physo135678.3;Parent=Physo135678;constitutive=1;rank=3 scaffold_40 . exon 40626 40729 . + . ID=Physo157255.4;Parent=Physo157255;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 . exon 40797 40907 . + . ID=Physo157255.5;Parent=Physo157255;constitutive=1;rank=5 scaffold_40 . exon 40966 41036 . + . ID=Physo157255.6;Parent=Physo157255;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_40 . exon 41129 41275 . + . ID=Physo157255.7;Parent=Physo157255;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_40 . exon 41762 41817 . + . ID=Physo157255.8;Parent=Physo157255;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_40 . exon 41884 42104 . + . ID=Physo157255.9;Parent=Physo157255;constitutive=1;ensembl_phase=1;rank=9 scaffold_40 . exon 42172 42243 . + . ID=Physo157255.10;Parent=Physo157255;constitutive=1;rank=10 scaffold_40 . exon 42312 42353 . + . ID=Physo157255.11;Parent=Physo157255;constitutive=1;rank=11 scaffold_40 . exon 42565 42570 . + . ID=Physo157255.12;Parent=Physo157255;constitutive=1;rank=12 scaffold_40 ensembl protein_coding_gene 50049 51485 . + . ID=Physo135679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400016;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 50049 51485 . + . ID=Physo135679;Parent=Physo135679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 50049 50893 . + 0 ID=Physo135679;Parent=Physo135679;rank=1 scaffold_40 . exon 50049 50893 . + . ID=Physo135679.1;Parent=Physo135679;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 50978 51098 . + 0 ID=Physo135679;Parent=Physo135679;rank=2 scaffold_40 . exon 50978 51098 . + . ID=Physo135679.2;Parent=Physo135679;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 51168 51485 . + 0 ID=Physo135679;Parent=Physo135679;rank=3 scaffold_40 . exon 51168 51485 . + . ID=Physo135679.3;Parent=Physo135679;constitutive=1;rank=3 scaffold_40 ensembl protein_coding_gene 54779 70732 . + . ID=Physo135681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400018;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 54779 70732 . + . ID=Physo135681;Parent=Physo135681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 54779 70732 . + 0 ID=Physo135681;Parent=Physo135681;rank=1 scaffold_40 . exon 54779 70732 . + . ID=Physo135681.1;Parent=Physo135681;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 51515 54622 . - . ID=Physo157256;biotype=protein_coding;external_name=C_scaffold_40000010;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 51515 54622 . - . ID=Physo157256;Parent=Physo157256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 51515 51753 . - 0 ID=Physo157256;Parent=Physo157256;rank=10 scaffold_40 . exon 51515 51753 . - . ID=Physo157256.10;Parent=Physo157256;constitutive=1;ensembl_phase=1;rank=10 scaffold_40 . CDS 51965 52247 . - 0 ID=Physo157256;Parent=Physo157256;rank=9 scaffold_40 . exon 51965 52247 . - . ID=Physo157256.9;Parent=Physo157256;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_40 . CDS 52299 52408 . - 0 ID=Physo157256;Parent=Physo157256;rank=8 scaffold_40 . exon 52299 52408 . - . ID=Physo157256.8;Parent=Physo157256;constitutive=1;ensembl_phase=1;rank=8 scaffold_40 . CDS 52481 52532 . - 0 ID=Physo157256;Parent=Physo157256;rank=7 scaffold_40 . exon 52481 52532 . - . ID=Physo157256.7;Parent=Physo157256;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_40 . CDS 52620 52937 . - 0 ID=Physo157256;Parent=Physo157256;rank=6 scaffold_40 . exon 52620 52937 . - . ID=Physo157256.6;Parent=Physo157256;constitutive=1;rank=6 scaffold_40 . CDS 53008 53182 . - 0 ID=Physo157256;Parent=Physo157256;rank=5 scaffold_40 . exon 53008 53182 . - . ID=Physo157256.5;Parent=Physo157256;constitutive=1;ensembl_phase=2;rank=5 scaffold_40 . CDS 53253 53339 . - 0 ID=Physo157256;Parent=Physo157256;rank=4 scaffold_40 . exon 53253 53339 . - . ID=Physo157256.4;Parent=Physo157256;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_40 . CDS 53405 53572 . - 0 ID=Physo157256;Parent=Physo157256;rank=3 scaffold_40 . exon 53405 53572 . - . ID=Physo157256.3;Parent=Physo157256;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_40 . CDS 53639 53830 . - 0 ID=Physo157256;Parent=Physo157256;rank=2 scaffold_40 . exon 53639 53830 . - . ID=Physo157256.2;Parent=Physo157256;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_40 . CDS 53904 54622 . - 0 ID=Physo157256;Parent=Physo157256;rank=1 scaffold_40 . exon 53904 54622 . - . ID=Physo157256.1;Parent=Physo157256;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . biological_region 62268 62272 0.999 + . logic_name=eponine scaffold_40 . biological_region 62959 62962 0.999 - . logic_name=eponine scaffold_40 . biological_region 68749 68751 0.999 - . logic_name=eponine scaffold_40 . biological_region 68780 68785 0.999 - . logic_name=eponine scaffold_40 . biological_region 69193 69194 0.999 - . logic_name=eponine scaffold_40 . biological_region 69248 69252 0.999 + . logic_name=eponine scaffold_40 . repeat_region 71668 71745 . ? . description=dust scaffold_40 . repeat_region 71851 71961 . ? . description=trf scaffold_40 . repeat_region 71858 72000 . ? . description=trf scaffold_40 . repeat_region 71889 71976 . ? . description=trf scaffold_40 . repeat_region 71988 72082 . ? . description=dust scaffold_40 . repeat_region 71993 72027 . ? . description=trf scaffold_40 . repeat_region 71993 72045 . ? . description=trf scaffold_40 . repeat_region 71996 72020 . ? . description=trf scaffold_40 . repeat_region 72032 72165 . ? . description=trf scaffold_40 . repeat_region 72132 72193 . ? . description=trf scaffold_40 . repeat_region 72191 72272 . ? . description=trf scaffold_40 . repeat_region 72211 72274 . ? . description=dust scaffold_40 . repeat_region 74242 74253 . ? . description=dust scaffold_40 . repeat_region 77323 77346 . ? . description=trf scaffold_40 . repeat_region 77391 77440 . ? . description=dust scaffold_40 . repeat_region 77391 77440 . ? . description=trf scaffold_40 . repeat_region 77707 77714 . ? . description=dust scaffold_40 ensembl protein_coding_gene 54779 70732 . + . ID=Physo135681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400018;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 54779 70732 . + . ID=Physo135681;Parent=Physo135681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 54779 70732 . + 0 ID=Physo135681;Parent=Physo135681;rank=1 scaffold_40 . exon 54779 70732 . + . ID=Physo135681.1;Parent=Physo135681;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 71399 72580 . + . ID=Physo135682;biotype=protein_coding;description=PsSNEL4 [Source:UniProtKB/TrEMBL%3BAcc:E0W551];external_name=estExt_fgenesh1_pg.C_400019;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 71399 72580 . + . ID=Physo135682;Parent=Physo135682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 71399 72580 . + 0 ID=Physo135682;Parent=Physo135682;rank=1 scaffold_40 . exon 71399 72580 . + . ID=Physo135682.1;Parent=Physo135682;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 72879 73628 . - . ID=Physo135683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400020;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 72879 73628 . - . ID=Physo135683;Parent=Physo135683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 72879 73628 . - 0 ID=Physo135683;Parent=Physo135683;rank=1 scaffold_40 . exon 72879 73628 . - . ID=Physo135683.1;Parent=Physo135683;constitutive=1;rank=1 scaffold_40 . biological_region 87659 87662 0.999 + . logic_name=eponine scaffold_40 ensembl protein_coding_gene 79430 80409 . + . ID=Physo135684;biotype=protein_coding;description=PsSNEL1 [Source:UniProtKB/TrEMBL%3BAcc:E0W552];external_name=estExt_fgenesh1_pg.C_400021;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 79430 80409 . + . ID=Physo135684;Parent=Physo135684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 79430 80010 . + 0 ID=Physo135684;Parent=Physo135684;rank=1 scaffold_40 . exon 79430 80010 . + . ID=Physo135684.1;Parent=Physo135684;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 80065 80207 . + 0 ID=Physo135684;Parent=Physo135684;rank=2 scaffold_40 . exon 80065 80207 . + . ID=Physo135684.2;Parent=Physo135684;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 80282 80409 . + 0 ID=Physo135684;Parent=Physo135684;rank=3 scaffold_40 . exon 80282 80409 . + . ID=Physo135684.3;Parent=Physo135684;constitutive=1;ensembl_phase=1;rank=3 scaffold_40 ensembl protein_coding_gene 87658 90076 . + . ID=Physo135685;biotype=protein_coding;description=PsSNEL3 [Source:UniProtKB/TrEMBL%3BAcc:E0W553];external_name=estExt_fgenesh1_pg.C_400022;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 87658 90076 . + . ID=Physo135685;Parent=Physo135685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 87658 89988 . + 0 ID=Physo135685;Parent=Physo135685;rank=1 scaffold_40 . exon 87658 90076 . + . ID=Physo135685.1;Parent=Physo135685;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_40 . repeat_region 88389 89079 . ? . description=trf scaffold_40 . repeat_region 88389 89385 . ? . description=trf scaffold_40 . repeat_region 88470 89313 . ? . description=trf scaffold_40 . repeat_region 88632 89456 . ? . description=trf scaffold_40 . repeat_region 88866 89115 . ? . description=trf scaffold_40 . repeat_region 88988 89051 . ? . description=dust scaffold_40 . repeat_region 89136 89232 . ? . description=trf scaffold_40 . repeat_region 89253 89385 . ? . description=trf scaffold_40 . repeat_region 89451 89936 . ? . description=trf scaffold_40 . repeat_region 90652 90706 . ? . description=trf scaffold_40 . repeat_region 90850 90903 . ? . description=trf scaffold_40 ensembl protein_coding_gene 91112 91891 . + . ID=Physo135686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400023;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 91112 91891 . + . ID=Physo135686;Parent=Physo135686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 91112 91891 . + 0 ID=Physo135686;Parent=Physo135686;rank=1 scaffold_40 . exon 91112 91891 . + . ID=Physo135686.1;Parent=Physo135686;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 92269 94206 . + . ID=Physo135687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400024;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 92269 94206 . + . ID=Physo135687;Parent=Physo135687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 92269 94206 . + 0 ID=Physo135687;Parent=Physo135687;rank=1 scaffold_40 . exon 92269 94206 . + . ID=Physo135687.1;Parent=Physo135687;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 94357 97092 . - . ID=Physo135688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400025;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 94357 97092 . - . ID=Physo135688;Parent=Physo135688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 94357 95427 . - 0 ID=Physo135688;Parent=Physo135688;rank=2 scaffold_40 . exon 94357 95427 . - . ID=Physo135688.2;Parent=Physo135688;constitutive=1;rank=2 scaffold_40 . CDS 95677 97092 . - 0 ID=Physo135688;Parent=Physo135688;rank=1 scaffold_40 . exon 95677 97092 . - . ID=Physo135688.1;Parent=Physo135688;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 97466 98699 . + . ID=Physo157265;biotype=protein_coding;external_name=C_scaffold_40000019;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 97466 98699 . + . ID=Physo157265;Parent=Physo157265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 97466 97673 . + 0 ID=Physo157265;Parent=Physo157265;rank=1 scaffold_40 . exon 97466 97673 . + . ID=Physo157265.1;Parent=Physo157265;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 97906 98213 . + 0 ID=Physo157265;Parent=Physo157265;rank=2 scaffold_40 . exon 97906 98213 . + . ID=Physo157265.2;Parent=Physo157265;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 98265 98699 . + 0 ID=Physo157265;Parent=Physo157265;rank=3 scaffold_40 . exon 98265 98699 . + . ID=Physo157265.3;Parent=Physo157265;constitutive=1;rank=3 scaffold_40 . biological_region 101120 101122 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 99082 99651 . - . ID=Physo135689;biotype=protein_coding;description=PsSNEL2 [Source:UniProtKB/TrEMBL%3BAcc:E0W554];external_name=estExt_fgenesh1_pg.C_400026;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 99082 99651 . - . ID=Physo135689;Parent=Physo135689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 99082 99651 . - 0 ID=Physo135689;Parent=Physo135689;rank=1 scaffold_40 . exon 99082 99651 . - . ID=Physo135689.1;Parent=Physo135689;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 100238 101218 . + . ID=Physo135690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400027;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 100238 101218 . + . ID=Physo135690;Parent=Physo135690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 100238 100565 . + 0 ID=Physo135690;Parent=Physo135690;rank=1 scaffold_40 . exon 100238 100565 . + . ID=Physo135690.1;Parent=Physo135690;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 100644 101218 . + 0 ID=Physo135690;Parent=Physo135690;rank=2 scaffold_40 . exon 100644 101218 . + . ID=Physo135690.2;Parent=Physo135690;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . repeat_region 112002 112026 . ? . description=trf scaffold_40 . repeat_region 118312 118378 . ? . description=dust scaffold_40 . repeat_region 118323 118377 . ? . description=trf scaffold_40 . repeat_region 118392 118418 . ? . description=trf scaffold_40 . repeat_region 118591 118604 . ? . description=dust scaffold_40 ensembl protein_coding_gene 110005 111707 . - . ID=Physo108894;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_400004;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 110005 111707 . - . ID=Physo108894;Parent=Physo108894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 110005 110099 . - 0 ID=Physo108894;Parent=Physo108894;rank=4 scaffold_40 . exon 110005 110099 . - . ID=Physo108894.4;Parent=Physo108894;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 . CDS 110126 111413 . - 0 ID=Physo108894;Parent=Physo108894;rank=3 scaffold_40 . exon 110126 111413 . - . ID=Physo108894.3;Parent=Physo108894;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_40 . CDS 111521 111558 . - 0 ID=Physo108894;Parent=Physo108894;rank=2 scaffold_40 . exon 111521 111558 . - . ID=Physo108894.2;Parent=Physo108894;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 111639 111681 . - 0 ID=Physo108894;Parent=Physo108894;rank=1 scaffold_40 . exon 111639 111707 . - . ID=Physo108894.1;Parent=Physo108894;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_40 ensembl protein_coding_gene 108969 109705 . + . ID=Physo135691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400028;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 108969 109705 . + . ID=Physo135691;Parent=Physo135691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 108969 109099 . + 0 ID=Physo135691;Parent=Physo135691;rank=1 scaffold_40 . exon 108969 109099 . + . ID=Physo135691.1;Parent=Physo135691;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 109191 109284 . + 0 ID=Physo135691;Parent=Physo135691;rank=2 scaffold_40 . exon 109191 109284 . + . ID=Physo135691.2;Parent=Physo135691;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 109348 109405 . + 0 ID=Physo135691;Parent=Physo135691;rank=3 scaffold_40 . exon 109348 109405 . + . ID=Physo135691.3;Parent=Physo135691;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_40 . CDS 109479 109705 . + 0 ID=Physo135691;Parent=Physo135691;rank=4 scaffold_40 . exon 109479 109705 . + . ID=Physo135691.4;Parent=Physo135691;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 ensembl protein_coding_gene 112192 113240 . + . ID=Physo135693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400030;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 112192 113240 . + . ID=Physo135693;Parent=Physo135693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 112192 113196 . + 0 ID=Physo135693;Parent=Physo135693;rank=1 scaffold_40 . exon 112192 113240 . + . ID=Physo135693.1;Parent=Physo135693;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_40 ensembl protein_coding_gene 113346 115770 . - . ID=Physo135694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400031;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 113346 115770 . - . ID=Physo135694;Parent=Physo135694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 113346 113662 . - 0 ID=Physo135694;Parent=Physo135694;rank=2 scaffold_40 . exon 113346 113662 . - . ID=Physo135694.2;Parent=Physo135694;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 113684 115727 . - 0 ID=Physo135694;Parent=Physo135694;rank=1 scaffold_40 . exon 113684 115770 . - . ID=Physo135694.1;Parent=Physo135694;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_40 ensembl protein_coding_gene 116382 118483 . - . ID=Physo135695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400032;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 116382 118483 . - . ID=Physo135695;Parent=Physo135695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 116382 116510 . - 0 ID=Physo135695;Parent=Physo135695;rank=5 scaffold_40 . exon 116382 116510 . - . ID=Physo135695.5;Parent=Physo135695;constitutive=1;rank=5 scaffold_40 . CDS 116573 117187 . - 0 ID=Physo135695;Parent=Physo135695;rank=4 scaffold_40 . exon 116573 117187 . - . ID=Physo135695.4;Parent=Physo135695;constitutive=1;rank=4 scaffold_40 . CDS 117263 117500 . - 0 ID=Physo135695;Parent=Physo135695;rank=3 scaffold_40 . exon 117263 117500 . - . ID=Physo135695.3;Parent=Physo135695;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 117576 117670 . - 0 ID=Physo135695;Parent=Physo135695;rank=2 scaffold_40 . exon 117576 117670 . - . ID=Physo135695.2;Parent=Physo135695;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_40 . CDS 117743 118483 . - 0 ID=Physo135695;Parent=Physo135695;rank=1 scaffold_40 . exon 117743 118483 . - . ID=Physo135695.1;Parent=Physo135695;constitutive=1;rank=1 scaffold_40 . repeat_region 128426 129761 . + . description=Sola3-1_PS scaffold_40 ensembl protein_coding_gene 123042 124772 . + . ID=Physo108895;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_400005;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 123042 124772 . + . ID=Physo108895;Parent=Physo108895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 123042 124772 . + 0 ID=Physo108895;Parent=Physo108895;rank=1 scaffold_40 . exon 123042 124772 . + . ID=Physo108895.1;Parent=Physo108895;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 120646 121563 . + . ID=Physo135696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400033;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 120646 121563 . + . ID=Physo135696;Parent=Physo135696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 120646 121563 . + 0 ID=Physo135696;Parent=Physo135696;rank=1 scaffold_40 . exon 120646 121563 . + . ID=Physo135696.1;Parent=Physo135696;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 125074 126232 . - . ID=Physo135698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400035;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 125074 126232 . - . ID=Physo135698;Parent=Physo135698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 125074 125218 . - 0 ID=Physo135698;Parent=Physo135698;rank=6 scaffold_40 . exon 125074 125218 . - . ID=Physo135698.6;Parent=Physo135698;constitutive=1;ensembl_phase=2;rank=6 scaffold_40 . CDS 125297 125602 . - 0 ID=Physo135698;Parent=Physo135698;rank=5 scaffold_40 . exon 125297 125602 . - . ID=Physo135698.5;Parent=Physo135698;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_40 . CDS 125689 125790 . - 0 ID=Physo135698;Parent=Physo135698;rank=4 scaffold_40 . exon 125689 125790 . - . ID=Physo135698.4;Parent=Physo135698;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_40 . CDS 125821 125856 . - 0 ID=Physo135698;Parent=Physo135698;rank=3 scaffold_40 . exon 125821 125856 . - . ID=Physo135698.3;Parent=Physo135698;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_40 . CDS 125937 126024 . - 0 ID=Physo135698;Parent=Physo135698;rank=2 scaffold_40 . exon 125937 126024 . - . ID=Physo135698.2;Parent=Physo135698;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 126217 126232 . - 0 ID=Physo135698;Parent=Physo135698;rank=1 scaffold_40 . exon 126217 126232 . - . ID=Physo135698.1;Parent=Physo135698;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . repeat_region 129762 131561 . ? . description=dust scaffold_40 . repeat_region 131648 131660 . ? . description=dust scaffold_40 . repeat_region 132748 132796 . ? . description=dust scaffold_40 . repeat_region 132760 132797 . ? . description=trf scaffold_40 . repeat_region 133768 133827 . ? . description=trf scaffold_40 . biological_region 136805 136807 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 134488 137034 . + . ID=Physo135699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400036;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 134488 137034 . + . ID=Physo135699;Parent=Physo135699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 134488 137034 . + 0 ID=Physo135699;Parent=Physo135699;rank=1 scaffold_40 . exon 134488 137034 . + . ID=Physo135699.1;Parent=Physo135699;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 139258 140160 . - . ID=Physo135700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400037;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 139258 140160 . - . ID=Physo135700;Parent=Physo135700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 139258 140160 . - 0 ID=Physo135700;Parent=Physo135700;rank=1 scaffold_40 . exon 139258 140160 . - . ID=Physo135700.1;Parent=Physo135700;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 145902 147257 . - . ID=Physo135701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400038;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 145902 147257 . - . ID=Physo135701;Parent=Physo135701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 145902 147257 . - 0 ID=Physo135701;Parent=Physo135701;rank=1 scaffold_40 . exon 145902 147257 . - . ID=Physo135701.1;Parent=Physo135701;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 147946 148745 . + . ID=Physo135702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400039;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 147946 148745 . + . ID=Physo135702;Parent=Physo135702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 147946 148678 . + 0 ID=Physo135702;Parent=Physo135702;rank=1 scaffold_40 . exon 147946 148678 . + . ID=Physo135702.1;Parent=Physo135702;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 148720 148745 . + 0 ID=Physo135702;Parent=Physo135702;rank=2 scaffold_40 . biological_region 154108 154113 0.999 + . logic_name=eponine scaffold_40 . biological_region 155874 155880 0.999 + . logic_name=eponine scaffold_40 . repeat_region 155918 155961 . ? . description=dust scaffold_40 . biological_region 157638 157640 0.999 + . logic_name=eponine scaffold_40 . repeat_region 157787 157846 . ? . description=dust scaffold_40 . repeat_region 157787 157847 . ? . description=trf scaffold_40 . repeat_region 157787 157847 . ? . description=trf scaffold_40 . repeat_region 157787 157849 . ? . description=trf scaffold_40 ensembl protein_coding_gene 155903 157948 . - . ID=Physo108896;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_400006;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 155903 157948 . - . ID=Physo108896;Parent=Physo108896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 155903 157948 . - 0 ID=Physo108896;Parent=Physo108896;rank=1 scaffold_40 . exon 155903 157948 . - . ID=Physo108896.1;Parent=Physo108896;constitutive=1;rank=1 scaffold_40 . exon 148720 148745 . + . ID=Physo135702.2;Parent=Physo135702;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 ensembl protein_coding_gene 151640 152336 . + . ID=Physo135703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400040;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 151640 152336 . + . ID=Physo135703;Parent=Physo135703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 151640 151798 . + 0 ID=Physo135703;Parent=Physo135703;rank=1 scaffold_40 . exon 151640 151798 . + . ID=Physo135703.1;Parent=Physo135703;constitutive=1;rank=1 scaffold_40 . CDS 151822 152076 . + 0 ID=Physo135703;Parent=Physo135703;rank=2 scaffold_40 . exon 151822 152076 . + . ID=Physo135703.2;Parent=Physo135703;constitutive=1;rank=2 scaffold_40 . CDS 152181 152336 . + 0 ID=Physo135703;Parent=Physo135703;rank=3 scaffold_40 . exon 152181 152336 . + . ID=Physo135703.3;Parent=Physo135703;constitutive=1;rank=3 scaffold_40 ensembl protein_coding_gene 152605 154863 . - . ID=Physo135704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400041;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 152605 154863 . - . ID=Physo135704;Parent=Physo135704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 152605 152753 . - 0 ID=Physo135704;Parent=Physo135704;rank=8 scaffold_40 . exon 152605 152753 . - . ID=Physo135704.8;Parent=Physo135704;constitutive=1;ensembl_phase=1;rank=8 scaffold_40 . CDS 152831 152950 . - 0 ID=Physo135704;Parent=Physo135704;rank=7 scaffold_40 . exon 152831 152950 . - . ID=Physo135704.7;Parent=Physo135704;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_40 . CDS 153036 153103 . - 0 ID=Physo135704;Parent=Physo135704;rank=6 scaffold_40 . exon 153036 153103 . - . ID=Physo135704.6;Parent=Physo135704;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_40 . CDS 153195 153331 . - 0 ID=Physo135704;Parent=Physo135704;rank=5 scaffold_40 . exon 153195 153331 . - . ID=Physo135704.5;Parent=Physo135704;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_40 . CDS 153414 153587 . - 0 ID=Physo135704;Parent=Physo135704;rank=4 scaffold_40 . exon 153414 153587 . - . ID=Physo135704.4;Parent=Physo135704;constitutive=1;rank=4 scaffold_40 . CDS 153674 153883 . - 0 ID=Physo135704;Parent=Physo135704;rank=3 scaffold_40 . exon 153674 153883 . - . ID=Physo135704.3;Parent=Physo135704;constitutive=1;rank=3 scaffold_40 . CDS 153977 154205 . - 0 ID=Physo135704;Parent=Physo135704;rank=2 scaffold_40 . exon 153977 154205 . - . ID=Physo135704.2;Parent=Physo135704;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 154553 154863 . - 0 ID=Physo135704;Parent=Physo135704;rank=1 scaffold_40 . exon 154553 154863 . - . ID=Physo135704.1;Parent=Physo135704;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 158272 161829 . + . ID=Physo135706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400043;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 158272 161829 . + . ID=Physo135706;Parent=Physo135706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 158272 161829 . + 0 ID=Physo135706;Parent=Physo135706;rank=1 scaffold_40 . exon 158272 161829 . + . ID=Physo135706.1;Parent=Physo135706;constitutive=1;rank=1 scaffold_40 . biological_region 170025 170029 0.999 + . logic_name=eponine scaffold_40 . biological_region 173615 173617 0.999 + . logic_name=eponine scaffold_40 . repeat_region 174566 174588 . ? . description=dust scaffold_40 ensembl protein_coding_gene 171753 172529 . - . ID=Physo108897;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_400007;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 171753 172529 . - . ID=Physo108897;Parent=Physo108897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 171753 172529 . - 0 ID=Physo108897;Parent=Physo108897;rank=1 scaffold_40 . exon 171753 172529 . - . ID=Physo108897.1;Parent=Physo108897;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 168665 169536 . + . ID=Physo135707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400044;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 168665 169536 . + . ID=Physo135707;Parent=Physo135707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 168665 168667 . + 0 ID=Physo135707;Parent=Physo135707;rank=1 scaffold_40 . exon 168665 168667 . + . ID=Physo135707.1;Parent=Physo135707;constitutive=1;rank=1 scaffold_40 . CDS 168811 169536 . + 0 ID=Physo135707;Parent=Physo135707;rank=2 scaffold_40 . exon 168811 169536 . + . ID=Physo135707.2;Parent=Physo135707;constitutive=1;rank=2 scaffold_40 ensembl protein_coding_gene 169754 171446 . - . ID=Physo135708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400045;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 169754 171446 . - . ID=Physo135708;Parent=Physo135708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 169754 169822 . - 0 ID=Physo135708;Parent=Physo135708;rank=2 scaffold_40 . exon 169754 169822 . - . ID=Physo135708.2;Parent=Physo135708;constitutive=1;rank=2 scaffold_40 . CDS 169917 171446 . - 0 ID=Physo135708;Parent=Physo135708;rank=1 scaffold_40 . exon 169917 171446 . - . ID=Physo135708.1;Parent=Physo135708;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 173123 173755 . - . ID=Physo135710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400047;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 173123 173755 . - . ID=Physo135710;Parent=Physo135710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 173123 173755 . - 0 ID=Physo135710;Parent=Physo135710;rank=1 scaffold_40 . exon 173123 173755 . - . ID=Physo135710.1;Parent=Physo135710;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 186741 188935 . + . ID=Physo135711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400048;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 186741 188935 . + . ID=Physo135711;Parent=Physo135711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 186741 186810 . + 0 ID=Physo135711;Parent=Physo135711;rank=1 scaffold_40 . exon 186741 186810 . + . ID=Physo135711.1;Parent=Physo135711;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 186993 187197 . + 0 ID=Physo135711;Parent=Physo135711;rank=2 scaffold_40 . exon 186993 187197 . + . ID=Physo135711.2;Parent=Physo135711;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 187251 187771 . + 0 ID=Physo135711;Parent=Physo135711;rank=3 scaffold_40 . exon 187251 187771 . + . ID=Physo135711.3;Parent=Physo135711;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 187864 188343 . + 0 ID=Physo135711;Parent=Physo135711;rank=4 scaffold_40 . exon 187864 188343 . + . ID=Physo135711.4;Parent=Physo135711;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_40 . CDS 188509 188522 . + 0 ID=Physo135711;Parent=Physo135711;rank=5 scaffold_40 . CDS 188544 188576 . + 0 ID=Physo135711;Parent=Physo135711;rank=6 scaffold_40 . CDS 188618 188935 . + 0 ID=Physo135711;Parent=Physo135711;rank=7 scaffold_40 . biological_region 188026 188028 0.999 - . logic_name=eponine scaffold_40 . repeat_region 188935 188960 . ? . description=dust scaffold_40 . repeat_region 188935 188960 . ? . description=trf scaffold_40 . repeat_region 192328 192335 . ? . description=dust scaffold_40 . repeat_region 192729 192736 . ? . description=dust scaffold_40 . biological_region 192959 192966 0.999 + . logic_name=eponine scaffold_40 . biological_region 192972 192979 0.999 + . logic_name=eponine scaffold_40 . biological_region 192991 192996 0.999 + . logic_name=eponine scaffold_40 . biological_region 192998 193002 0.999 - . logic_name=eponine scaffold_40 . biological_region 193012 193015 0.999 + . logic_name=eponine scaffold_40 . biological_region 193044 193048 0.999 - . logic_name=eponine scaffold_40 . biological_region 193050 193053 0.999 + . logic_name=eponine scaffold_40 . biological_region 193062 193065 0.999 - . logic_name=eponine scaffold_40 . repeat_region 193737 193786 . ? . description=trf scaffold_40 . exon 188509 188522 . + . ID=Physo135711.5;Parent=Physo135711;constitutive=1;ensembl_phase=1;rank=5 scaffold_40 . exon 188544 188576 . + . ID=Physo135711.6;Parent=Physo135711;constitutive=1;rank=6 scaffold_40 . exon 188618 188935 . + . ID=Physo135711.7;Parent=Physo135711;constitutive=1;rank=7 scaffold_40 ensembl protein_coding_gene 189336 191387 . + . ID=Physo135712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400049;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 189336 191387 . + . ID=Physo135712;Parent=Physo135712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 189336 191387 . + 0 ID=Physo135712;Parent=Physo135712;rank=1 scaffold_40 . exon 189336 191387 . + . ID=Physo135712.1;Parent=Physo135712;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 192710 194732 . + . ID=Physo135713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400050;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 192710 194732 . + . ID=Physo135713;Parent=Physo135713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 192710 192792 . + 0 ID=Physo135713;Parent=Physo135713;rank=1 scaffold_40 . exon 192710 192792 . + . ID=Physo135713.1;Parent=Physo135713;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 192857 194732 . + 0 ID=Physo135713;Parent=Physo135713;rank=2 scaffold_40 . exon 192857 194732 . + . ID=Physo135713.2;Parent=Physo135713;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 ensembl protein_coding_gene 194957 200737 . - . ID=Physo135714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400051;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 194957 200737 . - . ID=Physo135714;Parent=Physo135714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 194957 200737 . - 0 ID=Physo135714;Parent=Physo135714;rank=1 scaffold_40 . exon 194957 200737 . - . ID=Physo135714.1;Parent=Physo135714;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 202825 207484 . - . ID=Physo135715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400052;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 202825 207484 . - . ID=Physo135715;Parent=Physo135715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 202825 204819 . - 0 ID=Physo135715;Parent=Physo135715;rank=6 scaffold_40 . exon 202825 204819 . - . ID=Physo135715.6;Parent=Physo135715;constitutive=1;rank=6 scaffold_40 . CDS 204901 205541 . - 0 ID=Physo135715;Parent=Physo135715;rank=5 scaffold_40 . exon 204901 205541 . - . ID=Physo135715.5;Parent=Physo135715;constitutive=1;ensembl_phase=1;rank=5 scaffold_40 . CDS 205944 206293 . - 0 ID=Physo135715;Parent=Physo135715;rank=4 scaffold_40 . exon 205944 206293 . - . ID=Physo135715.4;Parent=Physo135715;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_40 . CDS 206365 206543 . - 0 ID=Physo135715;Parent=Physo135715;rank=3 scaffold_40 . exon 206365 206543 . - . ID=Physo135715.3;Parent=Physo135715;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_40 . CDS 206619 206712 . - 0 ID=Physo135715;Parent=Physo135715;rank=2 scaffold_40 . exon 206619 206712 . - . ID=Physo135715.2;Parent=Physo135715;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 206793 207484 . - 0 ID=Physo135715;Parent=Physo135715;rank=1 scaffold_40 . exon 206793 207484 . - . ID=Physo135715.1;Parent=Physo135715;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . repeat_region 207920 207932 . ? . description=dust scaffold_40 . repeat_region 208440 208488 . ? . description=trf scaffold_40 . repeat_region 208481 208488 . ? . description=dust scaffold_40 . biological_region 208888 208891 0.999 + . logic_name=eponine scaffold_40 . biological_region 212134 212134 0.999 + . logic_name=eponine scaffold_40 . repeat_region 212426 212474 . ? . description=dust scaffold_40 . repeat_region 212986 213021 . ? . description=dust scaffold_40 . repeat_region 212987 213014 . ? . description=trf scaffold_40 . biological_region 214337 214338 0.999 + . logic_name=eponine scaffold_40 . repeat_region 214612 214654 . ? . description=dust scaffold_40 . biological_region 215726 215728 0.999 - . logic_name=eponine scaffold_40 . biological_region 215737 215741 0.999 + . logic_name=eponine scaffold_40 . biological_region 215804 215806 0.999 - . logic_name=eponine scaffold_40 . biological_region 215866 215868 0.999 - . logic_name=eponine scaffold_40 . biological_region 215891 215895 0.999 + . logic_name=eponine scaffold_40 . repeat_region 215899 215930 . ? . description=trf scaffold_40 . biological_region 215903 215908 0.999 + . logic_name=eponine scaffold_40 ensembl protein_coding_gene 212037 212574 . - . ID=Physo135716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400053;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 212037 212574 . - . ID=Physo135716;Parent=Physo135716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 212037 212264 . - 0 ID=Physo135716;Parent=Physo135716;rank=3 scaffold_40 . exon 212037 212264 . - . ID=Physo135716.3;Parent=Physo135716;constitutive=1;rank=3 scaffold_40 . CDS 212345 212421 . - 0 ID=Physo135716;Parent=Physo135716;rank=2 scaffold_40 . exon 212345 212421 . - . ID=Physo135716.2;Parent=Physo135716;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 212490 212574 . - 0 ID=Physo135716;Parent=Physo135716;rank=1 scaffold_40 . exon 212490 212574 . - . ID=Physo135716.1;Parent=Physo135716;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 215620 217436 . + . ID=Physo135717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400054;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 215620 217436 . + . ID=Physo135717;Parent=Physo135717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 215620 215913 . + 0 ID=Physo135717;Parent=Physo135717;rank=1 scaffold_40 . exon 215620 215913 . + . ID=Physo135717.1;Parent=Physo135717;constitutive=1;rank=1 scaffold_40 . CDS 215958 217436 . + 0 ID=Physo135717;Parent=Physo135717;rank=2 scaffold_40 . exon 215958 217436 . + . ID=Physo135717.2;Parent=Physo135717;constitutive=1;rank=2 scaffold_40 ensembl protein_coding_gene 217376 219450 . - . ID=Physo135718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400055;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 217376 219450 . - . ID=Physo135718;Parent=Physo135718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 217376 218900 . - . ID=Physo135718.2;Parent=Physo135718;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_40 . CDS 217612 218900 . - 0 ID=Physo135718;Parent=Physo135718;rank=2 scaffold_40 . CDS 218989 219274 . - 0 ID=Physo135718;Parent=Physo135718;rank=1 scaffold_40 ensembl protein_coding_gene 226317 226879 . + . ID=Physo108898;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_400008;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 226317 226879 . + . ID=Physo108898;Parent=Physo108898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 226317 226550 . + 0 ID=Physo108898;Parent=Physo108898;rank=1 scaffold_40 . exon 226317 226550 . + . ID=Physo108898.1;Parent=Physo108898;constitutive=1;rank=1 scaffold_40 . CDS 226664 226879 . + 0 ID=Physo108898;Parent=Physo108898;rank=2 scaffold_40 . exon 226664 226879 . + . ID=Physo108898.2;Parent=Physo108898;constitutive=1;rank=2 scaffold_40 . exon 218989 219450 . - . ID=Physo135718.1;Parent=Physo135718;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_40 ensembl protein_coding_gene 219601 220917 . + . ID=Physo135719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400056;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 219601 220917 . + . ID=Physo135719;Parent=Physo135719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 219601 219922 . + 0 ID=Physo135719;Parent=Physo135719;rank=1 scaffold_40 . exon 219601 219922 . + . ID=Physo135719.1;Parent=Physo135719;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 220055 220917 . + 0 ID=Physo135719;Parent=Physo135719;rank=2 scaffold_40 . exon 220055 220917 . + . ID=Physo135719.2;Parent=Physo135719;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 ensembl protein_coding_gene 222722 223222 . + . ID=Physo135720;biotype=protein_coding;description=PsAvh179 [Source:UniProtKB/TrEMBL%3BAcc:E0W555];external_name=estExt_fgenesh1_pg.C_400057;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 222722 223222 . + . ID=Physo135720;Parent=Physo135720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 222722 223222 . + 0 ID=Physo135720;Parent=Physo135720;rank=1 scaffold_40 . exon 222722 223222 . + . ID=Physo135720.1;Parent=Physo135720;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 223465 225872 . - . ID=Physo135721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400058;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 223465 225872 . - . ID=Physo135721;Parent=Physo135721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 223465 223977 . - 0 ID=Physo135721;Parent=Physo135721;rank=5 scaffold_40 . exon 223465 223977 . - . ID=Physo135721.5;Parent=Physo135721;constitutive=1;rank=5 scaffold_40 . CDS 224056 224245 . - 0 ID=Physo135721;Parent=Physo135721;rank=4 scaffold_40 . exon 224056 224245 . - . ID=Physo135721.4;Parent=Physo135721;constitutive=1;ensembl_phase=2;rank=4 scaffold_40 . CDS 224380 224550 . - 0 ID=Physo135721;Parent=Physo135721;rank=3 scaffold_40 . exon 224380 224550 . - . ID=Physo135721.3;Parent=Physo135721;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_40 . CDS 224722 224778 . - 0 ID=Physo135721;Parent=Physo135721;rank=2 scaffold_40 . exon 224722 224778 . - . ID=Physo135721.2;Parent=Physo135721;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_40 . CDS 224848 225872 . - 0 ID=Physo135721;Parent=Physo135721;rank=1 scaffold_40 . exon 224848 225872 . - . ID=Physo135721.1;Parent=Physo135721;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 227060 228083 . - . ID=Physo135723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400060;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 227060 228083 . - . ID=Physo135723;Parent=Physo135723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 227060 227968 . - 0 ID=Physo135723;Parent=Physo135723;rank=1 scaffold_40 . exon 227060 228083 . - . ID=Physo135723.1;Parent=Physo135723;constitutive=1;ensembl_phase=-1;rank=1 scaffold_40 . biological_region 227587 227591 0.999 + . logic_name=eponine scaffold_40 . biological_region 227852 227855 0.999 + . logic_name=eponine scaffold_40 . biological_region 228029 228031 0.999 + . logic_name=eponine scaffold_40 . biological_region 228530 228534 0.999 - . logic_name=eponine scaffold_40 . repeat_region 230602 230610 . ? . description=dust scaffold_40 . biological_region 231017 231021 0.999 + . logic_name=eponine scaffold_40 . biological_region 231045 231046 0.999 - . logic_name=eponine scaffold_40 . biological_region 231099 231104 0.999 + . logic_name=eponine scaffold_40 . biological_region 231721 231723 0.999 + . logic_name=eponine scaffold_40 . biological_region 231739 231743 0.999 + . logic_name=eponine scaffold_40 . biological_region 231758 231761 0.999 - . logic_name=eponine scaffold_40 . repeat_region 231862 231888 . ? . description=dust scaffold_40 . biological_region 232199 232200 0.999 - . logic_name=eponine scaffold_40 . biological_region 232245 232249 0.999 - . logic_name=eponine scaffold_40 . biological_region 232516 232520 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 230666 231514 . - . ID=Physo108899;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_400009;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 230666 231514 . - . ID=Physo108899;Parent=Physo108899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 230666 231409 . - 0 ID=Physo108899;Parent=Physo108899;rank=2 scaffold_40 . exon 230666 231409 . - . ID=Physo108899.2;Parent=Physo108899;constitutive=1;rank=2 scaffold_40 . CDS 231488 231514 . - 0 ID=Physo108899;Parent=Physo108899;rank=1 scaffold_40 . exon 231488 231514 . - . ID=Physo108899.1;Parent=Physo108899;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 231695 233220 . + . ID=Physo135725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400062;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 231695 233220 . + . ID=Physo135725;Parent=Physo135725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 231695 231856 . + 0 ID=Physo135725;Parent=Physo135725;rank=1 scaffold_40 . exon 231695 231856 . + . ID=Physo135725.1;Parent=Physo135725;constitutive=1;rank=1 scaffold_40 . CDS 231956 232920 . + 0 ID=Physo135725;Parent=Physo135725;rank=2 scaffold_40 . exon 231956 232920 . + . ID=Physo135725.2;Parent=Physo135725;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_40 . CDS 233003 233198 . + 0 ID=Physo135725;Parent=Physo135725;rank=3 scaffold_40 . exon 233003 233220 . + . ID=Physo135725.3;Parent=Physo135725;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_40 ensembl protein_coding_gene 233669 235054 . - . ID=Physo135726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400063;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 233669 235054 . - . ID=Physo135726;Parent=Physo135726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 233669 234893 . - 0 ID=Physo135726;Parent=Physo135726;rank=2 scaffold_40 . exon 233669 234893 . - . ID=Physo135726.2;Parent=Physo135726;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 234921 235054 . - 0 ID=Physo135726;Parent=Physo135726;rank=1 scaffold_40 . exon 234921 235054 . - . ID=Physo135726.1;Parent=Physo135726;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 245395 246326 . + . ID=Physo117282;biotype=protein_coding;external_name=estExt_Genewise1.C_400136;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 245395 246326 . + . ID=Physo117282;Parent=Physo117282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 245395 246024 . + . ID=Physo117282.1;Parent=Physo117282;constitutive=1;ensembl_phase=-1;rank=1 scaffold_40 . CDS 245584 246024 . + 0 ID=Physo117282;Parent=Physo117282;rank=1 scaffold_40 . CDS 246090 246326 . + 0 ID=Physo117282;Parent=Physo117282;rank=2 scaffold_40 . exon 246090 246326 . + . ID=Physo117282.2;Parent=Physo117282;constitutive=1;rank=2 scaffold_40 ensembl protein_coding_gene 239233 240332 . + . ID=Physo135727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400064;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 239233 240332 . + . ID=Physo135727;Parent=Physo135727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 239233 239413 . + 0 ID=Physo135727;Parent=Physo135727;rank=1 scaffold_40 . exon 239233 239413 . + . ID=Physo135727.1;Parent=Physo135727;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 239485 239692 . + 0 ID=Physo135727;Parent=Physo135727;rank=2 scaffold_40 . exon 239485 239692 . + . ID=Physo135727.2;Parent=Physo135727;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 239771 239951 . + 0 ID=Physo135727;Parent=Physo135727;rank=3 scaffold_40 . exon 239771 239951 . + . ID=Physo135727.3;Parent=Physo135727;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 240109 240274 . + 0 ID=Physo135727;Parent=Physo135727;rank=4 scaffold_40 . exon 240109 240274 . + . ID=Physo135727.4;Parent=Physo135727;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_40 . CDS 240319 240332 . + 0 ID=Physo135727;Parent=Physo135727;rank=5 scaffold_40 . exon 240319 240332 . + . ID=Physo135727.5;Parent=Physo135727;constitutive=1;ensembl_phase=1;rank=5 scaffold_40 ensembl protein_coding_gene 242874 245083 . + . ID=Physo135730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400067;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 242874 245083 . + . ID=Physo135730;Parent=Physo135730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 242874 245083 . + . ID=Physo135730.1;Parent=Physo135730;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_40 . CDS 242972 244954 . + 0 ID=Physo135730;Parent=Physo135730;rank=1 scaffold_40 ensembl protein_coding_gene 240804 242490 . - . ID=Physo157268;biotype=protein_coding;external_name=C_scaffold_40000022;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 240804 242490 . - . ID=Physo157268;Parent=Physo157268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 240804 241280 . - 0 ID=Physo157268;Parent=Physo157268;rank=2 scaffold_40 . exon 240804 241280 . - . ID=Physo157268.2;Parent=Physo157268;constitutive=1;rank=2 scaffold_40 . CDS 241354 242490 . - 0 ID=Physo157268;Parent=Physo157268;rank=1 scaffold_40 . exon 241354 242490 . - . ID=Physo157268.1;Parent=Physo157268;constitutive=1;rank=1 scaffold_40 . biological_region 247758 247758 0.999 + . logic_name=eponine scaffold_40 . biological_region 247878 247879 0.999 + . logic_name=eponine scaffold_40 . biological_region 247891 247891 0.999 - . logic_name=eponine scaffold_40 . biological_region 248496 248498 0.999 - . logic_name=eponine scaffold_40 . biological_region 249342 249345 0.999 + . logic_name=eponine scaffold_40 . repeat_region 249533 249567 . ? . description=trf scaffold_40 . repeat_region 250212 250225 . ? . description=dust scaffold_40 . biological_region 255537 255542 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 247726 249711 . - . ID=Physo135731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400068;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 247726 249711 . - . ID=Physo135731;Parent=Physo135731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 247726 249711 . - 0 ID=Physo135731;Parent=Physo135731;rank=1 scaffold_40 . exon 247726 249711 . - . ID=Physo135731.1;Parent=Physo135731;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 257002 257511 . - . ID=Physo135732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400069;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 257002 257511 . - . ID=Physo135732;Parent=Physo135732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 257002 257511 . - 0 ID=Physo135732;Parent=Physo135732;rank=1 scaffold_40 . exon 257002 257511 . - . ID=Physo135732.1;Parent=Physo135732;constitutive=1;rank=1 scaffold_40 . repeat_region 264013 266354 . + . description=GypsyPi-1c_I-int scaffold_40 ensembl protein_coding_gene 263300 266615 . + . ID=Physo135733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400070;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 263300 266615 . + . ID=Physo135733;Parent=Physo135733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 263300 266336 . + 0 ID=Physo135733;Parent=Physo135733;rank=1 scaffold_40 . exon 263300 266336 . + . ID=Physo135733.1;Parent=Physo135733;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 266393 266468 . + 0 ID=Physo135733;Parent=Physo135733;rank=2 scaffold_40 . exon 266393 266468 . + . ID=Physo135733.2;Parent=Physo135733;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 266534 266615 . + 0 ID=Physo135733;Parent=Physo135733;rank=3 scaffold_40 . exon 266534 266615 . + . ID=Physo135733.3;Parent=Physo135733;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . biological_region 267571 267572 0.999 - . logic_name=eponine scaffold_40 . biological_region 268105 268111 0.999 + . logic_name=eponine scaffold_40 . biological_region 268107 268107 0.999 - . logic_name=eponine scaffold_40 . biological_region 268204 268207 0.999 - . logic_name=eponine scaffold_40 . biological_region 268222 268226 0.999 - . logic_name=eponine scaffold_40 . biological_region 268343 268343 0.999 - . logic_name=eponine scaffold_40 . biological_region 270566 270568 0.999 + . logic_name=eponine scaffold_40 . biological_region 271819 271822 0.999 - . logic_name=eponine scaffold_40 . repeat_region 274751 274759 . ? . description=dust scaffold_40 . biological_region 274832 274835 0.999 + . logic_name=eponine scaffold_40 . repeat_region 276793 276801 . ? . description=dust scaffold_40 ensembl protein_coding_gene 268105 268470 . - . ID=Physo135734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400071;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 268105 268470 . - . ID=Physo135734;Parent=Physo135734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 268105 268470 . - 0 ID=Physo135734;Parent=Physo135734;rank=1 scaffold_40 . exon 268105 268470 . - . ID=Physo135734.1;Parent=Physo135734;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 270166 273135 . + . ID=Physo135735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400072;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 270166 273135 . + . ID=Physo135735;Parent=Physo135735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 270166 270331 . + 0 ID=Physo135735;Parent=Physo135735;rank=1 scaffold_40 . exon 270166 270331 . + . ID=Physo135735.1;Parent=Physo135735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 270396 270692 . + 0 ID=Physo135735;Parent=Physo135735;rank=2 scaffold_40 . exon 270396 270692 . + . ID=Physo135735.2;Parent=Physo135735;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 270725 271150 . + 0 ID=Physo135735;Parent=Physo135735;rank=3 scaffold_40 . exon 270725 271150 . + . ID=Physo135735.3;Parent=Physo135735;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_40 . CDS 271246 271921 . + 0 ID=Physo135735;Parent=Physo135735;rank=4 scaffold_40 . exon 271246 271921 . + . ID=Physo135735.4;Parent=Physo135735;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_40 . CDS 272019 273135 . + 0 ID=Physo135735;Parent=Physo135735;rank=5 scaffold_40 . exon 272019 273135 . + . ID=Physo135735.5;Parent=Physo135735;constitutive=1;ensembl_phase=2;rank=5 scaffold_40 . repeat_region 287688 287696 . ? . description=dust scaffold_40 . repeat_region 288469 288476 . ? . description=dust scaffold_40 . repeat_region 288931 288938 . ? . description=dust scaffold_40 . repeat_region 289302 289310 . ? . description=dust scaffold_40 . biological_region 291703 291703 0.999 - . logic_name=eponine scaffold_40 . repeat_region 291738 291746 . ? . description=dust scaffold_40 . biological_region 291817 291819 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 290369 290863 . - . ID=Physo135736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400073;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 290369 290863 . - . ID=Physo135736;Parent=Physo135736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 290369 290416 . - 0 ID=Physo135736;Parent=Physo135736;rank=3 scaffold_40 . exon 290369 290416 . - . ID=Physo135736.3;Parent=Physo135736;constitutive=1;rank=3 scaffold_40 . CDS 290481 290733 . - 0 ID=Physo135736;Parent=Physo135736;rank=2 scaffold_40 . exon 290481 290733 . - . ID=Physo135736.2;Parent=Physo135736;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 290763 290863 . - 0 ID=Physo135736;Parent=Physo135736;rank=1 scaffold_40 . exon 290763 290863 . - . ID=Physo135736.1;Parent=Physo135736;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 291384 292638 . + . ID=Physo135737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400074;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 291384 292638 . + . ID=Physo135737;Parent=Physo135737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 291384 291732 . + 0 ID=Physo135737;Parent=Physo135737;rank=1 scaffold_40 . exon 291384 291732 . + . ID=Physo135737.1;Parent=Physo135737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 291773 292638 . + 0 ID=Physo135737;Parent=Physo135737;rank=2 scaffold_40 . exon 291773 292638 . + . ID=Physo135737.2;Parent=Physo135737;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . repeat_region 299869 299913 . ? . description=trf scaffold_40 . repeat_region 302970 303030 . ? . description=trf scaffold_40 ensembl protein_coding_gene 297359 298150 . + . ID=Physo135738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400075;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 297359 298150 . + . ID=Physo135738;Parent=Physo135738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 297359 298150 . + 0 ID=Physo135738;Parent=Physo135738;rank=1 scaffold_40 . exon 297359 298150 . + . ID=Physo135738.1;Parent=Physo135738;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 300218 301400 . - . ID=Physo135739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400076;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 300218 301400 . - . ID=Physo135739;Parent=Physo135739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 300218 300261 . - 0 ID=Physo135739;Parent=Physo135739;rank=4 scaffold_40 . exon 300218 300261 . - . ID=Physo135739.4;Parent=Physo135739;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 . CDS 300444 300615 . - 0 ID=Physo135739;Parent=Physo135739;rank=3 scaffold_40 . exon 300444 300615 . - . ID=Physo135739.3;Parent=Physo135739;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_40 . CDS 300665 301011 . - 0 ID=Physo135739;Parent=Physo135739;rank=2 scaffold_40 . exon 300665 301011 . - . ID=Physo135739.2;Parent=Physo135739;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 301394 301400 . - 0 ID=Physo135739;Parent=Physo135739;rank=1 scaffold_40 . exon 301394 301400 . - . ID=Physo135739.1;Parent=Physo135739;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 304450 306156 . + . ID=Physo135740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400077;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 304450 306156 . + . ID=Physo135740;Parent=Physo135740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 304450 306156 . + 0 ID=Physo135740;Parent=Physo135740;rank=1 scaffold_40 . exon 304450 306156 . + . ID=Physo135740.1;Parent=Physo135740;constitutive=1;rank=1 scaffold_40 . biological_region 309118 309121 0.999 - . logic_name=eponine scaffold_40 . repeat_region 309163 309209 . ? . description=dust scaffold_40 . biological_region 309352 309357 0.999 + . logic_name=eponine scaffold_40 . biological_region 309486 309487 0.999 - . logic_name=eponine scaffold_40 . biological_region 310302 310302 0.999 - . logic_name=eponine scaffold_40 . biological_region 312457 312462 0.999 + . logic_name=eponine scaffold_40 . biological_region 312759 312762 0.999 - . logic_name=eponine scaffold_40 . biological_region 312813 312816 0.999 + . logic_name=eponine scaffold_40 . repeat_region 313022 313033 . ? . description=dust scaffold_40 . biological_region 313451 313451 0.999 + . logic_name=eponine scaffold_40 . biological_region 313475 313477 0.999 - . logic_name=eponine scaffold_40 . repeat_region 314278 314293 . ? . description=dust scaffold_40 ensembl protein_coding_gene 308724 310968 . + . ID=Physo135741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400078;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 308724 310968 . + . ID=Physo135741;Parent=Physo135741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 308724 308783 . + 0 ID=Physo135741;Parent=Physo135741;rank=1 scaffold_40 . exon 308724 308783 . + . ID=Physo135741.1;Parent=Physo135741;constitutive=1;rank=1 scaffold_40 . CDS 309179 309485 . + 0 ID=Physo135741;Parent=Physo135741;rank=2 scaffold_40 . exon 309179 309485 . + . ID=Physo135741.2;Parent=Physo135741;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_40 . CDS 309568 309858 . + 0 ID=Physo135741;Parent=Physo135741;rank=3 scaffold_40 . exon 309568 309858 . + . ID=Physo135741.3;Parent=Physo135741;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_40 . CDS 309925 310817 . + 0 ID=Physo135741;Parent=Physo135741;rank=4 scaffold_40 . exon 309925 310968 . + . ID=Physo135741.4;Parent=Physo135741;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_40 ensembl protein_coding_gene 310999 312542 . - . ID=Physo135742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400079;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 310999 312542 . - . ID=Physo135742;Parent=Physo135742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 310999 312207 . - 0 ID=Physo135742;Parent=Physo135742;rank=2 scaffold_40 . exon 310999 312207 . - . ID=Physo135742.2;Parent=Physo135742;constitutive=1;rank=2 scaffold_40 . CDS 312282 312542 . - 0 ID=Physo135742;Parent=Physo135742;rank=1 scaffold_40 . exon 312282 312542 . - . ID=Physo135742.1;Parent=Physo135742;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 313037 313681 . - . ID=Physo135743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400080;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 313037 313681 . - . ID=Physo135743;Parent=Physo135743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 313037 313681 . - 0 ID=Physo135743;Parent=Physo135743;rank=1 scaffold_40 . exon 313037 313681 . - . ID=Physo135743.1;Parent=Physo135743;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 314722 318641 . + . ID=Physo135744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400081;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 314722 318641 . + . ID=Physo135744;Parent=Physo135744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 314722 315501 . + 0 ID=Physo135744;Parent=Physo135744;rank=1 scaffold_40 . exon 314722 315501 . + . ID=Physo135744.1;Parent=Physo135744;constitutive=1;rank=1 scaffold_40 . CDS 315529 315965 . + 0 ID=Physo135744;Parent=Physo135744;rank=2 scaffold_40 . exon 315529 315965 . + . ID=Physo135744.2;Parent=Physo135744;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_40 . CDS 316194 316615 . + 0 ID=Physo135744;Parent=Physo135744;rank=3 scaffold_40 . exon 316194 316615 . + . ID=Physo135744.3;Parent=Physo135744;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 316816 318464 . + 0 ID=Physo135744;Parent=Physo135744;rank=4 scaffold_40 . repeat_region 321690 321721 . ? . description=trf scaffold_40 . repeat_region 323451 323487 . ? . description=trf scaffold_40 . exon 316816 318516 . + . ID=Physo135744.4;Parent=Physo135744;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_40 . exon 318542 318571 . + . ID=Physo135744.5;Parent=Physo135744;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_40 . exon 318627 318641 . + . ID=Physo135744.6;Parent=Physo135744;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=6 scaffold_40 ensembl protein_coding_gene 321958 323991 . - . ID=Physo135745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400082;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 321958 323991 . - . ID=Physo135745;Parent=Physo135745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 321958 322137 . - 0 ID=Physo135745;Parent=Physo135745;rank=3 scaffold_40 . exon 321958 322137 . - . ID=Physo135745.3;Parent=Physo135745;constitutive=1;rank=3 scaffold_40 . CDS 322231 323113 . - 0 ID=Physo135745;Parent=Physo135745;rank=2 scaffold_40 . exon 322231 323113 . - . ID=Physo135745.2;Parent=Physo135745;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 323195 323991 . - 0 ID=Physo135745;Parent=Physo135745;rank=1 scaffold_40 . exon 323195 323991 . - . ID=Physo135745.1;Parent=Physo135745;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 324240 325517 . + . ID=Physo135746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400083;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 324240 325517 . + . ID=Physo135746;Parent=Physo135746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 324240 324242 . + 0 ID=Physo135746;Parent=Physo135746;rank=1 scaffold_40 . exon 324240 324242 . + . ID=Physo135746.1;Parent=Physo135746;constitutive=1;rank=1 scaffold_40 . CDS 324289 324496 . + 0 ID=Physo135746;Parent=Physo135746;rank=2 scaffold_40 . exon 324289 324496 . + . ID=Physo135746.2;Parent=Physo135746;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_40 . CDS 324521 324693 . + 0 ID=Physo135746;Parent=Physo135746;rank=3 scaffold_40 . exon 324521 324693 . + . ID=Physo135746.3;Parent=Physo135746;constitutive=1;ensembl_phase=1;rank=3 scaffold_40 . CDS 324745 324853 . + 0 ID=Physo135746;Parent=Physo135746;rank=4 scaffold_40 . exon 324745 324853 . + . ID=Physo135746.4;Parent=Physo135746;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_40 . CDS 324912 325165 . + 0 ID=Physo135746;Parent=Physo135746;rank=5 scaffold_40 . exon 324912 325165 . + . ID=Physo135746.5;Parent=Physo135746;constitutive=1;ensembl_phase=1;rank=5 scaffold_40 . CDS 325212 325517 . + 0 ID=Physo135746;Parent=Physo135746;rank=6 scaffold_40 . exon 325212 325517 . + . ID=Physo135746.6;Parent=Physo135746;constitutive=1;rank=6 scaffold_40 ensembl protein_coding_gene 325765 330514 . - . ID=Physo135747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400084;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 325765 330514 . - . ID=Physo135747;Parent=Physo135747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 325765 326475 . - 0 ID=Physo135747;Parent=Physo135747;rank=6 scaffold_40 . exon 325765 326475 . - . ID=Physo135747.6;Parent=Physo135747;constitutive=1;rank=6 scaffold_40 . CDS 326505 326939 . - 0 ID=Physo135747;Parent=Physo135747;rank=5 scaffold_40 . CDS 326997 327243 . - 0 ID=Physo135747;Parent=Physo135747;rank=4 scaffold_40 . CDS 327625 328505 . - 0 ID=Physo135747;Parent=Physo135747;rank=3 scaffold_40 . CDS 328589 329257 . - 0 ID=Physo135747;Parent=Physo135747;rank=2 scaffold_40 . CDS 329465 330514 . - 0 ID=Physo135747;Parent=Physo135747;rank=1 scaffold_40 . biological_region 326858 326862 0.999 + . logic_name=eponine scaffold_40 . biological_region 326916 326919 0.999 - . logic_name=eponine scaffold_40 . biological_region 326941 326949 0.999 - . logic_name=eponine scaffold_40 . biological_region 327273 327273 0.999 - . logic_name=eponine scaffold_40 . biological_region 327286 327286 0.999 + . logic_name=eponine scaffold_40 . biological_region 327288 327293 0.999 - . logic_name=eponine scaffold_40 . biological_region 334268 334268 0.999 + . logic_name=eponine scaffold_40 . exon 326505 326939 . - . ID=Physo135747.5;Parent=Physo135747;constitutive=1;rank=5 scaffold_40 . exon 326997 327243 . - . ID=Physo135747.4;Parent=Physo135747;constitutive=1;ensembl_phase=2;rank=4 scaffold_40 . exon 327625 328505 . - . ID=Physo135747.3;Parent=Physo135747;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_40 . exon 328589 329257 . - . ID=Physo135747.2;Parent=Physo135747;constitutive=1;rank=2 scaffold_40 . exon 329465 330514 . - . ID=Physo135747.1;Parent=Physo135747;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 330691 332178 . + . ID=Physo135748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400085;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 330691 332178 . + . ID=Physo135748;Parent=Physo135748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 330691 330911 . + 0 ID=Physo135748;Parent=Physo135748;rank=1 scaffold_40 . exon 330691 330911 . + . ID=Physo135748.1;Parent=Physo135748;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 330938 331764 . + 0 ID=Physo135748;Parent=Physo135748;rank=2 scaffold_40 . exon 330938 331764 . + . ID=Physo135748.2;Parent=Physo135748;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 332048 332178 . + 0 ID=Physo135748;Parent=Physo135748;rank=3 scaffold_40 . exon 332048 332178 . + . ID=Physo135748.3;Parent=Physo135748;constitutive=1;ensembl_phase=1;rank=3 scaffold_40 ensembl protein_coding_gene 334033 336004 . + . ID=Physo135749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400086;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 334033 336004 . + . ID=Physo135749;Parent=Physo135749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 334033 334078 . + 0 ID=Physo135749;Parent=Physo135749;rank=1 scaffold_40 . exon 334033 334078 . + . ID=Physo135749.1;Parent=Physo135749;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 334264 335078 . + 0 ID=Physo135749;Parent=Physo135749;rank=2 scaffold_40 . exon 334264 335078 . + . ID=Physo135749.2;Parent=Physo135749;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 335199 335269 . + 0 ID=Physo135749;Parent=Physo135749;rank=3 scaffold_40 . exon 335199 335269 . + . ID=Physo135749.3;Parent=Physo135749;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_40 . CDS 335446 336004 . + 0 ID=Physo135749;Parent=Physo135749;rank=4 scaffold_40 . exon 335446 336004 . + . ID=Physo135749.4;Parent=Physo135749;constitutive=1;ensembl_phase=2;rank=4 scaffold_40 . repeat_region 336689 336722 . ? . description=trf scaffold_40 . repeat_region 343049 343058 . ? . description=dust scaffold_40 ensembl protein_coding_gene 339315 340505 . + . ID=Physo117159;biotype=protein_coding;external_name=estExt_Genewise1.C_400013;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 339315 340505 . + . ID=Physo117159;Parent=Physo117159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 339315 339886 . + . ID=Physo117159.1;Parent=Physo117159;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_40 . CDS 339375 339886 . + 0 ID=Physo117159;Parent=Physo117159;rank=1 scaffold_40 . CDS 340118 340505 . + 0 ID=Physo117159;Parent=Physo117159;rank=2 scaffold_40 . exon 340118 340505 . + . ID=Physo117159.2;Parent=Physo117159;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 ensembl protein_coding_gene 341999 344862 . - . ID=Physo135751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400088;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 341999 344862 . - . ID=Physo135751;Parent=Physo135751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 341999 342408 . - 0 ID=Physo135751;Parent=Physo135751;rank=13 scaffold_40 . exon 341999 342408 . - . ID=Physo135751.13;Parent=Physo135751;constitutive=1;ensembl_phase=1;rank=13 scaffold_40 . CDS 342481 342567 . - 0 ID=Physo135751;Parent=Physo135751;rank=12 scaffold_40 . exon 342481 342567 . - . ID=Physo135751.12;Parent=Physo135751;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_40 . CDS 342656 342826 . - 0 ID=Physo135751;Parent=Physo135751;rank=11 scaffold_40 . exon 342656 342826 . - . ID=Physo135751.11;Parent=Physo135751;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_40 . CDS 342958 343009 . - 0 ID=Physo135751;Parent=Physo135751;rank=10 scaffold_40 . exon 342958 343009 . - . ID=Physo135751.10;Parent=Physo135751;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_40 . CDS 343075 343221 . - 0 ID=Physo135751;Parent=Physo135751;rank=9 scaffold_40 . exon 343075 343221 . - . ID=Physo135751.9;Parent=Physo135751;constitutive=1;rank=9 scaffold_40 . CDS 343386 343457 . - 0 ID=Physo135751;Parent=Physo135751;rank=8 scaffold_40 . exon 343386 343457 . - . ID=Physo135751.8;Parent=Physo135751;constitutive=1;rank=8 scaffold_40 . CDS 343546 343777 . - 0 ID=Physo135751;Parent=Physo135751;rank=7 scaffold_40 . exon 343546 343777 . - . ID=Physo135751.7;Parent=Physo135751;constitutive=1;ensembl_phase=2;rank=7 scaffold_40 . CDS 343822 343883 . - 0 ID=Physo135751;Parent=Physo135751;rank=6 scaffold_40 . exon 343822 343883 . - . ID=Physo135751.6;Parent=Physo135751;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_40 . CDS 343960 344029 . - 0 ID=Physo135751;Parent=Physo135751;rank=5 scaffold_40 . exon 343960 344029 . - . ID=Physo135751.5;Parent=Physo135751;constitutive=1;ensembl_phase=2;rank=5 scaffold_40 . CDS 344096 344421 . - 0 ID=Physo135751;Parent=Physo135751;rank=4 scaffold_40 . exon 344096 344421 . - . ID=Physo135751.4;Parent=Physo135751;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_40 . CDS 344497 344566 . - 0 ID=Physo135751;Parent=Physo135751;rank=3 scaffold_40 . exon 344497 344566 . - . ID=Physo135751.3;Parent=Physo135751;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 344643 344718 . - 0 ID=Physo135751;Parent=Physo135751;rank=2 scaffold_40 . exon 344643 344718 . - . ID=Physo135751.2;Parent=Physo135751;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 344793 344862 . - 0 ID=Physo135751;Parent=Physo135751;rank=1 scaffold_40 . exon 344793 344862 . - . ID=Physo135751.1;Parent=Physo135751;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . biological_region 346871 346877 0.999 + . logic_name=eponine scaffold_40 . biological_region 346940 346945 0.999 + . logic_name=eponine scaffold_40 . biological_region 349688 349694 0.999 - . logic_name=eponine scaffold_40 . biological_region 349970 349975 0.999 + . logic_name=eponine scaffold_40 . biological_region 350016 350019 0.999 + . logic_name=eponine scaffold_40 . biological_region 350027 350031 0.999 + . logic_name=eponine scaffold_40 . biological_region 350049 350053 0.999 - . logic_name=eponine scaffold_40 . biological_region 350104 350110 0.999 + . logic_name=eponine scaffold_40 . biological_region 351527 351532 0.999 + . logic_name=eponine scaffold_40 . biological_region 351561 351564 0.999 + . logic_name=eponine scaffold_40 . biological_region 351680 351685 0.999 - . logic_name=eponine scaffold_40 . biological_region 352916 352917 0.999 + . logic_name=eponine scaffold_40 ensembl protein_coding_gene 346870 350202 . - . ID=Physo135752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400089;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 346870 350202 . - . ID=Physo135752;Parent=Physo135752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 346870 348399 . - 0 ID=Physo135752;Parent=Physo135752;rank=3 scaffold_40 . exon 346870 348399 . - . ID=Physo135752.3;Parent=Physo135752;constitutive=1;rank=3 scaffold_40 . CDS 348442 348837 . - 0 ID=Physo135752;Parent=Physo135752;rank=2 scaffold_40 . exon 348442 348837 . - . ID=Physo135752.2;Parent=Physo135752;constitutive=1;rank=2 scaffold_40 . CDS 348880 350202 . - 0 ID=Physo135752;Parent=Physo135752;rank=1 scaffold_40 . exon 348880 350202 . - . ID=Physo135752.1;Parent=Physo135752;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 351517 353277 . + . ID=Physo135753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400090;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 351517 353277 . + . ID=Physo135753;Parent=Physo135753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 351517 351768 . + 0 ID=Physo135753;Parent=Physo135753;rank=1 scaffold_40 . exon 351517 351768 . + . ID=Physo135753.1;Parent=Physo135753;constitutive=1;rank=1 scaffold_40 . CDS 351858 351941 . + 0 ID=Physo135753;Parent=Physo135753;rank=2 scaffold_40 . exon 351858 351941 . + . ID=Physo135753.2;Parent=Physo135753;constitutive=1;rank=2 scaffold_40 . CDS 352031 352090 . + 0 ID=Physo135753;Parent=Physo135753;rank=3 scaffold_40 . exon 352031 352090 . + . ID=Physo135753.3;Parent=Physo135753;constitutive=1;rank=3 scaffold_40 . CDS 352164 352238 . + 0 ID=Physo135753;Parent=Physo135753;rank=4 scaffold_40 . exon 352164 352238 . + . ID=Physo135753.4;Parent=Physo135753;constitutive=1;rank=4 scaffold_40 . CDS 352328 352432 . + 0 ID=Physo135753;Parent=Physo135753;rank=5 scaffold_40 . exon 352328 352432 . + . ID=Physo135753.5;Parent=Physo135753;constitutive=1;rank=5 scaffold_40 . CDS 352522 352602 . + 0 ID=Physo135753;Parent=Physo135753;rank=6 scaffold_40 . exon 352522 352602 . + . ID=Physo135753.6;Parent=Physo135753;constitutive=1;rank=6 scaffold_40 . CDS 352687 353097 . + 0 ID=Physo135753;Parent=Physo135753;rank=7 scaffold_40 . exon 352687 353097 . + . ID=Physo135753.7;Parent=Physo135753;constitutive=1;rank=7 scaffold_40 . CDS 353182 353277 . + 0 ID=Physo135753;Parent=Physo135753;rank=8 scaffold_40 . exon 353182 353277 . + . ID=Physo135753.8;Parent=Physo135753;constitutive=1;rank=8 scaffold_40 ensembl protein_coding_gene 353603 355106 . + . ID=Physo135754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400091;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 353603 355106 . + . ID=Physo135754;Parent=Physo135754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 353603 354388 . + 0 ID=Physo135754;Parent=Physo135754;rank=1 scaffold_40 . exon 353603 354388 . + . ID=Physo135754.1;Parent=Physo135754;constitutive=1;rank=1 scaffold_40 . CDS 354453 355106 . + 0 ID=Physo135754;Parent=Physo135754;rank=2 scaffold_40 . exon 354453 355106 . + . ID=Physo135754.2;Parent=Physo135754;constitutive=1;rank=2 scaffold_40 ensembl protein_coding_gene 355193 356632 . - . ID=Physo135755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400092;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 355193 356632 . - . ID=Physo135755;Parent=Physo135755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 355193 356632 . - 0 ID=Physo135755;Parent=Physo135755;rank=1 scaffold_40 . exon 355193 356632 . - . ID=Physo135755.1;Parent=Physo135755;constitutive=1;rank=1 scaffold_40 . repeat_region 365717 365839 . ? . description=trf scaffold_40 ensembl protein_coding_gene 356962 359103 . - . ID=Physo135756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400093;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 356962 359103 . - . ID=Physo135756;Parent=Physo135756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 356962 359103 . - 0 ID=Physo135756;Parent=Physo135756;rank=1 scaffold_40 . exon 356962 359103 . - . ID=Physo135756.1;Parent=Physo135756;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 360969 363126 . - . ID=Physo135757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400094;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 360969 363126 . - . ID=Physo135757;Parent=Physo135757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 360969 361457 . - 0 ID=Physo135757;Parent=Physo135757;rank=4 scaffold_40 . exon 360969 361457 . - . ID=Physo135757.4;Parent=Physo135757;constitutive=1;rank=4 scaffold_40 . CDS 361556 361865 . - 0 ID=Physo135757;Parent=Physo135757;rank=3 scaffold_40 . exon 361556 361865 . - . ID=Physo135757.3;Parent=Physo135757;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 362159 362248 . - 0 ID=Physo135757;Parent=Physo135757;rank=2 scaffold_40 . exon 362159 362248 . - . ID=Physo135757.2;Parent=Physo135757;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_40 . CDS 362360 363126 . - 0 ID=Physo135757;Parent=Physo135757;rank=1 scaffold_40 . exon 362360 363126 . - . ID=Physo135757.1;Parent=Physo135757;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 363581 364717 . - . ID=Physo135758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400095;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 363581 364717 . - . ID=Physo135758;Parent=Physo135758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 363581 364481 . - 0 ID=Physo135758;Parent=Physo135758;rank=2 scaffold_40 . exon 363581 364481 . - . ID=Physo135758.2;Parent=Physo135758;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 364701 364717 . - 0 ID=Physo135758;Parent=Physo135758;rank=1 scaffold_40 . exon 364701 364717 . - . ID=Physo135758.1;Parent=Physo135758;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . biological_region 366472 366474 0.999 - . logic_name=eponine scaffold_40 . biological_region 368120 368122 0.999 - . logic_name=eponine scaffold_40 . biological_region 368732 368736 0.999 + . logic_name=eponine scaffold_40 . biological_region 368972 368977 0.999 + . logic_name=eponine scaffold_40 . biological_region 369113 369116 0.999 - . logic_name=eponine scaffold_40 . biological_region 375738 375740 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 366119 368276 . + . ID=Physo135759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400096;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 366119 368276 . + . ID=Physo135759;Parent=Physo135759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 366119 366885 . + 0 ID=Physo135759;Parent=Physo135759;rank=1 scaffold_40 . exon 366119 366885 . + . ID=Physo135759.1;Parent=Physo135759;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 366997 367086 . + 0 ID=Physo135759;Parent=Physo135759;rank=2 scaffold_40 . exon 366997 367086 . + . ID=Physo135759.2;Parent=Physo135759;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_40 . CDS 367525 367552 . + 0 ID=Physo135759;Parent=Physo135759;rank=3 scaffold_40 . exon 367525 367552 . + . ID=Physo135759.3;Parent=Physo135759;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 367788 368276 . + 0 ID=Physo135759;Parent=Physo135759;rank=4 scaffold_40 . exon 367788 368276 . + . ID=Physo135759.4;Parent=Physo135759;constitutive=1;rank=4 scaffold_40 ensembl protein_coding_gene 368658 371197 . - . ID=Physo135760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400097;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 368658 371197 . - . ID=Physo135760;Parent=Physo135760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 368658 368832 . - 0 ID=Physo135760;Parent=Physo135760;rank=3 scaffold_40 . exon 368658 368832 . - . ID=Physo135760.3;Parent=Physo135760;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 368923 369705 . - 0 ID=Physo135760;Parent=Physo135760;rank=2 scaffold_40 . exon 368923 369705 . - . ID=Physo135760.2;Parent=Physo135760;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_40 . CDS 369777 371197 . - 0 ID=Physo135760;Parent=Physo135760;rank=1 scaffold_40 . exon 369777 371197 . - . ID=Physo135760.1;Parent=Physo135760;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 371370 373188 . + . ID=Physo135761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400098;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 371370 373188 . + . ID=Physo135761;Parent=Physo135761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 371370 371444 . + 0 ID=Physo135761;Parent=Physo135761;rank=1 scaffold_40 . exon 371370 371444 . + . ID=Physo135761.1;Parent=Physo135761;constitutive=1;rank=1 scaffold_40 . CDS 371537 371637 . + 0 ID=Physo135761;Parent=Physo135761;rank=2 scaffold_40 . exon 371537 371637 . + . ID=Physo135761.2;Parent=Physo135761;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_40 . CDS 371724 371788 . + 0 ID=Physo135761;Parent=Physo135761;rank=3 scaffold_40 . exon 371724 371788 . + . ID=Physo135761.3;Parent=Physo135761;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 371874 371968 . + 0 ID=Physo135761;Parent=Physo135761;rank=4 scaffold_40 . exon 371874 371968 . + . ID=Physo135761.4;Parent=Physo135761;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 . CDS 372052 373068 . + 0 ID=Physo135761;Parent=Physo135761;rank=5 scaffold_40 . exon 372052 373068 . + . ID=Physo135761.5;Parent=Physo135761;constitutive=1;rank=5 scaffold_40 . CDS 373138 373188 . + 0 ID=Physo135761;Parent=Physo135761;rank=6 scaffold_40 . exon 373138 373188 . + . ID=Physo135761.6;Parent=Physo135761;constitutive=1;rank=6 scaffold_40 ensembl protein_coding_gene 373359 375695 . - . ID=Physo135762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400099;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 373359 375695 . - . ID=Physo135762;Parent=Physo135762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 373359 374190 . - 0 ID=Physo135762;Parent=Physo135762;rank=2 scaffold_40 . exon 373359 374190 . - . ID=Physo135762.4;Parent=Physo135762;constitutive=1;ensembl_phase=2;rank=4 scaffold_40 . CDS 374282 374463 . - 0 ID=Physo135762;Parent=Physo135762;rank=1 scaffold_40 . exon 374282 375164 . - . ID=Physo135762.3;Parent=Physo135762;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=3 scaffold_40 . exon 375246 375284 . - . ID=Physo135762.2;Parent=Physo135762;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_40 . exon 375351 375695 . - . ID=Physo135762.1;Parent=Physo135762;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_40 . repeat_region 379494 379537 . ? . description=dust scaffold_40 . repeat_region 380086 380148 . ? . description=dust scaffold_40 ensembl protein_coding_gene 376980 379273 . - . ID=Physo135764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400101;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 376980 379273 . - . ID=Physo135764;Parent=Physo135764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 376980 378227 . - 0 ID=Physo135764;Parent=Physo135764;rank=4 scaffold_40 . exon 376980 378227 . - . ID=Physo135764.4;Parent=Physo135764;constitutive=1;rank=4 scaffold_40 . CDS 378304 378664 . - 0 ID=Physo135764;Parent=Physo135764;rank=3 scaffold_40 . exon 378304 378664 . - . ID=Physo135764.3;Parent=Physo135764;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 378738 378882 . - 0 ID=Physo135764;Parent=Physo135764;rank=2 scaffold_40 . exon 378738 378882 . - . ID=Physo135764.2;Parent=Physo135764;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 379144 379273 . - 0 ID=Physo135764;Parent=Physo135764;rank=1 scaffold_40 . exon 379144 379273 . - . ID=Physo135764.1;Parent=Physo135764;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 379490 381883 . + . ID=Physo135765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400102;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 379490 381883 . + . ID=Physo135765;Parent=Physo135765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 379490 380574 . + 0 ID=Physo135765;Parent=Physo135765;rank=1 scaffold_40 . exon 379490 380574 . + . ID=Physo135765.1;Parent=Physo135765;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 380638 380746 . + 0 ID=Physo135765;Parent=Physo135765;rank=2 scaffold_40 . exon 380638 380746 . + . ID=Physo135765.2;Parent=Physo135765;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 380812 380970 . + 0 ID=Physo135765;Parent=Physo135765;rank=3 scaffold_40 . exon 380812 380970 . + . ID=Physo135765.3;Parent=Physo135765;constitutive=1;rank=3 scaffold_40 . CDS 381040 381243 . + 0 ID=Physo135765;Parent=Physo135765;rank=4 scaffold_40 . exon 381040 381243 . + . ID=Physo135765.4;Parent=Physo135765;constitutive=1;rank=4 scaffold_40 . CDS 381305 381634 . + 0 ID=Physo135765;Parent=Physo135765;rank=5 scaffold_40 . exon 381305 381634 . + . ID=Physo135765.5;Parent=Physo135765;constitutive=1;rank=5 scaffold_40 . CDS 381713 381883 . + 0 ID=Physo135765;Parent=Physo135765;rank=6 scaffold_40 . exon 381713 381883 . + . ID=Physo135765.6;Parent=Physo135765;constitutive=1;rank=6 scaffold_40 . biological_region 388217 388220 0.999 + . logic_name=eponine scaffold_40 . biological_region 388245 388245 0.999 + . logic_name=eponine scaffold_40 . repeat_region 391554 391663 . ? . description=trf scaffold_40 . biological_region 395613 395617 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 386069 388983 . - . ID=Physo157274;biotype=protein_coding;external_name=C_scaffold_40000028;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 386069 388983 . - . ID=Physo157274;Parent=Physo157274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 386069 386348 . - 0 ID=Physo157274;Parent=Physo157274;rank=7 scaffold_40 . exon 386069 386348 . - . ID=Physo157274.7;Parent=Physo157274;constitutive=1;ensembl_phase=2;rank=7 scaffold_40 . CDS 386535 386744 . - 0 ID=Physo157274;Parent=Physo157274;rank=6 scaffold_40 . exon 386535 386744 . - . ID=Physo157274.6;Parent=Physo157274;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_40 . CDS 386790 386991 . - 0 ID=Physo157274;Parent=Physo157274;rank=5 scaffold_40 . exon 386790 386991 . - . ID=Physo157274.5;Parent=Physo157274;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_40 . CDS 387151 387259 . - 0 ID=Physo157274;Parent=Physo157274;rank=4 scaffold_40 . exon 387151 387259 . - . ID=Physo157274.4;Parent=Physo157274;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_40 . CDS 388079 388438 . - 0 ID=Physo157274;Parent=Physo157274;rank=3 scaffold_40 . exon 388079 388438 . - . ID=Physo157274.3;Parent=Physo157274;constitutive=1;rank=3 scaffold_40 . CDS 388484 388540 . - 0 ID=Physo157274;Parent=Physo157274;rank=2 scaffold_40 . exon 388484 388540 . - . ID=Physo157274.2;Parent=Physo157274;constitutive=1;rank=2 scaffold_40 . CDS 388645 388983 . - 0 ID=Physo157274;Parent=Physo157274;rank=1 scaffold_40 . exon 388645 388983 . - . ID=Physo157274.1;Parent=Physo157274;constitutive=1;rank=1 scaffold_40 . repeat_region 395807 396522 . ? . description=dust scaffold_40 . repeat_region 400304 400361 . ? . description=dust scaffold_40 . repeat_region 400822 400838 . ? . description=dust scaffold_40 . repeat_region 400861 400873 . ? . description=dust scaffold_40 . repeat_region 401011 401020 . ? . description=dust scaffold_40 . repeat_region 401036 401085 . ? . description=dust scaffold_40 ensembl protein_coding_gene 397139 397679 . + . ID=Physo135767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400104;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 397139 397679 . + . ID=Physo135767;Parent=Physo135767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 397139 397266 . + 0 ID=Physo135767;Parent=Physo135767;rank=1 scaffold_40 . exon 397139 397266 . + . ID=Physo135767.1;Parent=Physo135767;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 397295 397679 . + 0 ID=Physo135767;Parent=Physo135767;rank=2 scaffold_40 . exon 397295 397679 . + . ID=Physo135767.2;Parent=Physo135767;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . repeat_region 406158 406230 . ? . description=trf scaffold_40 . repeat_region 406913 406938 . ? . description=trf scaffold_40 . biological_region 407788 407790 0.999 - . logic_name=eponine scaffold_40 . repeat_region 408139 408193 . ? . description=trf scaffold_40 . biological_region 410525 410527 0.999 + . logic_name=eponine scaffold_40 . biological_region 410535 410535 0.999 + . logic_name=eponine scaffold_40 . biological_region 410601 410605 0.999 + . logic_name=eponine scaffold_40 . biological_region 410739 410749 0.999 + . logic_name=eponine scaffold_40 . biological_region 410745 410748 0.999 - . logic_name=eponine scaffold_40 . biological_region 410767 410774 0.999 - . logic_name=eponine scaffold_40 . biological_region 410799 410804 0.999 + . logic_name=eponine scaffold_40 . biological_region 410820 410822 0.999 - . logic_name=eponine scaffold_40 . biological_region 410857 410863 0.999 - . logic_name=eponine scaffold_40 . biological_region 410915 410919 0.999 + . logic_name=eponine scaffold_40 . biological_region 410928 410934 0.999 - . logic_name=eponine scaffold_40 . biological_region 410986 410988 0.999 + . logic_name=eponine scaffold_40 . biological_region 411009 411011 0.999 - . logic_name=eponine scaffold_40 . biological_region 411040 411040 0.999 + . logic_name=eponine scaffold_40 . biological_region 411064 411066 0.999 + . logic_name=eponine scaffold_40 . biological_region 411127 411132 0.999 + . logic_name=eponine scaffold_40 . biological_region 411217 411219 0.999 - . logic_name=eponine scaffold_40 . biological_region 411231 411233 0.999 + . logic_name=eponine scaffold_40 . biological_region 411292 411295 0.999 + . logic_name=eponine scaffold_40 . biological_region 411298 411302 0.999 - . logic_name=eponine scaffold_40 . biological_region 411330 411337 0.999 + . logic_name=eponine scaffold_40 . biological_region 411352 411361 0.999 + . logic_name=eponine scaffold_40 . biological_region 414522 414522 0.999 - . logic_name=eponine scaffold_40 . biological_region 414557 414561 0.999 + . logic_name=eponine scaffold_40 . biological_region 414583 414587 0.999 - . logic_name=eponine scaffold_40 . biological_region 414628 414630 0.999 - . logic_name=eponine scaffold_40 . biological_region 414988 414991 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 406247 409105 . - . ID=Physo135768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400105;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 406247 409105 . - . ID=Physo135768;Parent=Physo135768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 406247 407320 . - 0 ID=Physo135768;Parent=Physo135768;rank=3 scaffold_40 . exon 406247 407320 . - . ID=Physo135768.3;Parent=Physo135768;constitutive=1;rank=3 scaffold_40 . CDS 407522 407773 . - 0 ID=Physo135768;Parent=Physo135768;rank=2 scaffold_40 . exon 407522 407773 . - . ID=Physo135768.2;Parent=Physo135768;constitutive=1;rank=2 scaffold_40 . CDS 408368 409105 . - 0 ID=Physo135768;Parent=Physo135768;rank=1 scaffold_40 . exon 408368 409105 . - . ID=Physo135768.1;Parent=Physo135768;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 410653 416155 . + . ID=Physo135769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400106;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 410653 416155 . + . ID=Physo135769;Parent=Physo135769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 410653 413639 . + 0 ID=Physo135769;Parent=Physo135769;rank=1 scaffold_40 . exon 410653 413639 . + . ID=Physo135769.1;Parent=Physo135769;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 413821 414097 . + 0 ID=Physo135769;Parent=Physo135769;rank=2 scaffold_40 . exon 413821 414097 . + . ID=Physo135769.2;Parent=Physo135769;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 414159 414751 . + 0 ID=Physo135769;Parent=Physo135769;rank=3 scaffold_40 . exon 414159 414751 . + . ID=Physo135769.3;Parent=Physo135769;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_40 . CDS 414844 416155 . + 0 ID=Physo135769;Parent=Physo135769;rank=4 scaffold_40 . exon 414844 416155 . + . ID=Physo135769.4;Parent=Physo135769;constitutive=1;ensembl_phase=2;rank=4 scaffold_40 . repeat_region 418310 418319 . ? . description=dust scaffold_40 ensembl protein_coding_gene 416266 418275 . - . ID=Physo135770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400107;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 416266 418275 . - . ID=Physo135770;Parent=Physo135770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 416266 418275 . - . ID=Physo135770.1;Parent=Physo135770;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_40 . CDS 416452 418221 . - 0 ID=Physo135770;Parent=Physo135770;rank=1 scaffold_40 ensembl protein_coding_gene 419543 421132 . + . ID=Physo135771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400108;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 419543 421132 . + . ID=Physo135771;Parent=Physo135771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 419543 421132 . + 0 ID=Physo135771;Parent=Physo135771;rank=1 scaffold_40 . exon 419543 421132 . + . ID=Physo135771.1;Parent=Physo135771;constitutive=1;rank=1 scaffold_40 . biological_region 428080 428081 0.999 + . logic_name=eponine scaffold_40 . biological_region 428801 428802 0.999 - . logic_name=eponine scaffold_40 . biological_region 429318 429322 0.999 - . logic_name=eponine scaffold_40 . biological_region 429329 429334 0.999 - . logic_name=eponine scaffold_40 . biological_region 429372 429373 0.999 + . logic_name=eponine scaffold_40 . biological_region 429461 429464 0.999 - . logic_name=eponine scaffold_40 . repeat_region 431842 431967 . ? . description=trf scaffold_40 . biological_region 432827 432832 0.999 - . logic_name=eponine scaffold_40 . biological_region 433965 433967 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 426041 426784 . - . ID=Physo108901;biotype=protein_coding;description=Elicitin proteinElicitin-like protein SOL6 [Source:UniProtKB/TrEMBL%3BAcc:Q84UD6];external_name=SOJX;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 426041 426784 . - . ID=Physo108901;Parent=Physo108901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 426041 426559 . - 0 ID=Physo108901;Parent=Physo108901;rank=1 scaffold_40 . exon 426041 426784 . - . ID=Physo108901.1;Parent=Physo108901;constitutive=1;ensembl_phase=-1;rank=1 scaffold_40 ensembl protein_coding_gene 432705 434210 . + . ID=Physo135776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400113;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 432705 434210 . + . ID=Physo135776;Parent=Physo135776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 432705 432936 . + 0 ID=Physo135776;Parent=Physo135776;rank=1 scaffold_40 . exon 432705 432936 . + . ID=Physo135776.1;Parent=Physo135776;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 433018 434210 . + 0 ID=Physo135776;Parent=Physo135776;rank=2 scaffold_40 . exon 433018 434210 . + . ID=Physo135776.2;Parent=Physo135776;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 ensembl protein_coding_gene 434398 435135 . + . ID=Physo135777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400114;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 434398 435135 . + . ID=Physo135777;Parent=Physo135777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 434398 434717 . + 0 ID=Physo135777;Parent=Physo135777;rank=1 scaffold_40 . exon 434398 434717 . + . ID=Physo135777.1;Parent=Physo135777;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 434799 435135 . + 0 ID=Physo135777;Parent=Physo135777;rank=2 scaffold_40 . exon 434799 435135 . + . ID=Physo135777.2;Parent=Physo135777;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 ensembl protein_coding_gene 426954 427606 . - . ID=Physo157278;biotype=protein_coding;external_name=C_scaffold_40000032;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 426954 427606 . - . ID=Physo157278;Parent=Physo157278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 426954 426980 . - 0 ID=Physo157278;Parent=Physo157278;rank=2 scaffold_40 . exon 426954 426980 . - . ID=Physo157278.2;Parent=Physo157278;constitutive=1;rank=2 scaffold_40 . CDS 427019 427606 . - 0 ID=Physo157278;Parent=Physo157278;rank=1 scaffold_40 . exon 427019 427606 . - . ID=Physo157278.1;Parent=Physo157278;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 427933 429007 . - . ID=Physo157279;biotype=protein_coding;external_name=C_scaffold_40000033;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 427933 429007 . - . ID=Physo157279;Parent=Physo157279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 427933 428408 . - 0 ID=Physo157279;Parent=Physo157279;rank=3 scaffold_40 . exon 427933 428408 . - . ID=Physo157279.3;Parent=Physo157279;constitutive=1;ensembl_phase=1;rank=3 scaffold_40 . CDS 428498 428564 . - 0 ID=Physo157279;Parent=Physo157279;rank=2 scaffold_40 . exon 428498 428564 . - . ID=Physo157279.2;Parent=Physo157279;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_40 . CDS 428639 429007 . - 0 ID=Physo157279;Parent=Physo157279;rank=1 scaffold_40 . exon 428639 429007 . - . ID=Physo157279.1;Parent=Physo157279;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 429264 431267 . + . ID=Physo157282;biotype=protein_coding;external_name=C_scaffold_40000036;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 429264 431267 . + . ID=Physo157282;Parent=Physo157282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 429264 430639 . + 0 ID=Physo157282;Parent=Physo157282;rank=1 scaffold_40 . exon 429264 430639 . + . ID=Physo157282.1;Parent=Physo157282;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 430706 430973 . + 0 ID=Physo157282;Parent=Physo157282;rank=2 scaffold_40 . exon 430706 430973 . + . ID=Physo157282.2;Parent=Physo157282;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 431040 431267 . + 0 ID=Physo157282;Parent=Physo157282;rank=3 scaffold_40 . exon 431040 431267 . + . ID=Physo157282.3;Parent=Physo157282;constitutive=1;rank=3 scaffold_40 . repeat_region 436102 436140 . ? . description=dust scaffold_40 ensembl protein_coding_gene 440041 441041 . - . ID=Physo135779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400116;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 440041 441041 . - . ID=Physo135779;Parent=Physo135779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 440041 440073 . - 0 ID=Physo135779;Parent=Physo135779;rank=4 scaffold_40 . exon 440041 440073 . - . ID=Physo135779.4;Parent=Physo135779;constitutive=1;rank=4 scaffold_40 . CDS 440161 440269 . - 0 ID=Physo135779;Parent=Physo135779;rank=3 scaffold_40 . exon 440161 440269 . - . ID=Physo135779.3;Parent=Physo135779;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 440351 440447 . - 0 ID=Physo135779;Parent=Physo135779;rank=2 scaffold_40 . exon 440351 440447 . - . ID=Physo135779.2;Parent=Physo135779;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 440516 441041 . - 0 ID=Physo135779;Parent=Physo135779;rank=1 scaffold_40 . exon 440516 441041 . - . ID=Physo135779.1;Parent=Physo135779;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 441243 442907 . + . ID=Physo135780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400117;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 441243 442907 . + . ID=Physo135780;Parent=Physo135780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 441243 442907 . + 0 ID=Physo135780;Parent=Physo135780;rank=1 scaffold_40 . exon 441243 442907 . + . ID=Physo135780.1;Parent=Physo135780;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 437653 439916 . + . ID=Physo157284;biotype=protein_coding;external_name=C_scaffold_40000038;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 437653 439916 . + . ID=Physo157284;Parent=Physo157284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 437653 437683 . + 0 ID=Physo157284;Parent=Physo157284;rank=1 scaffold_40 . exon 437653 437683 . + . ID=Physo157284.1;Parent=Physo157284;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 437758 438757 . + 0 ID=Physo157284;Parent=Physo157284;rank=2 scaffold_40 . exon 437758 438757 . + . ID=Physo157284.2;Parent=Physo157284;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 438797 439312 . + 0 ID=Physo157284;Parent=Physo157284;rank=3 scaffold_40 . exon 438797 439312 . + . ID=Physo157284.3;Parent=Physo157284;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_40 . CDS 439344 439430 . + 0 ID=Physo157284;Parent=Physo157284;rank=4 scaffold_40 . exon 439344 439430 . + . ID=Physo157284.4;Parent=Physo157284;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_40 . CDS 439523 439725 . + 0 ID=Physo157284;Parent=Physo157284;rank=5 scaffold_40 . exon 439523 439725 . + . ID=Physo157284.5;Parent=Physo157284;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_40 . CDS 439774 439916 . + 0 ID=Physo157284;Parent=Physo157284;rank=6 scaffold_40 . exon 439774 439916 . + . ID=Physo157284.6;Parent=Physo157284;constitutive=1;ensembl_phase=1;rank=6 scaffold_40 . repeat_region 447698 447738 . ? . description=trf scaffold_40 . biological_region 452560 452561 0.999 - . logic_name=eponine scaffold_40 . biological_region 452803 452805 0.999 + . logic_name=eponine scaffold_40 . biological_region 452816 452819 0.999 - . logic_name=eponine scaffold_40 . biological_region 452835 452837 0.999 + . logic_name=eponine scaffold_40 . biological_region 452850 452854 0.999 - . logic_name=eponine scaffold_40 . biological_region 452898 452908 0.999 - . logic_name=eponine scaffold_40 . biological_region 452904 452910 0.999 + . logic_name=eponine scaffold_40 . biological_region 452926 452932 0.999 + . logic_name=eponine scaffold_40 . biological_region 452965 452970 0.999 - . logic_name=eponine scaffold_40 . biological_region 453660 453661 0.999 - . logic_name=eponine scaffold_40 . biological_region 453676 453679 0.999 + . logic_name=eponine scaffold_40 . repeat_region 454013 454071 . ? . description=trf scaffold_40 . biological_region 454127 454132 0.999 + . logic_name=eponine scaffold_40 . biological_region 454213 454219 0.999 - . logic_name=eponine scaffold_40 . repeat_region 454287 454307 . ? . description=trf scaffold_40 . biological_region 454404 454404 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 446413 454244 . - . ID=Physo157289;biotype=protein_coding;external_name=C_scaffold_40000043;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 446413 454244 . - . ID=Physo157289;Parent=Physo157289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 446413 446619 . - 0 ID=Physo157289;Parent=Physo157289;rank=11 scaffold_40 . exon 446413 446619 . - . ID=Physo157289.11;Parent=Physo157289;constitutive=1;rank=11 scaffold_40 . CDS 446858 447019 . - 0 ID=Physo157289;Parent=Physo157289;rank=10 scaffold_40 . exon 446858 447019 . - . ID=Physo157289.10;Parent=Physo157289;constitutive=1;rank=10 scaffold_40 . CDS 447273 448330 . - 0 ID=Physo157289;Parent=Physo157289;rank=9 scaffold_40 . exon 447273 448330 . - . ID=Physo157289.9;Parent=Physo157289;constitutive=1;ensembl_phase=1;rank=9 scaffold_40 . CDS 448577 448942 . - 0 ID=Physo157289;Parent=Physo157289;rank=8 scaffold_40 . exon 448577 448942 . - . ID=Physo157289.8;Parent=Physo157289;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_40 . CDS 449000 449438 . - 0 ID=Physo157289;Parent=Physo157289;rank=7 scaffold_40 . exon 449000 449438 . - . ID=Physo157289.7;Parent=Physo157289;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_40 . CDS 449490 450015 . - 0 ID=Physo157289;Parent=Physo157289;rank=6 scaffold_40 . exon 449490 450015 . - . ID=Physo157289.6;Parent=Physo157289;constitutive=1;ensembl_phase=2;rank=6 scaffold_40 . CDS 450082 452021 . - 0 ID=Physo157289;Parent=Physo157289;rank=5 scaffold_40 . exon 450082 452021 . - . ID=Physo157289.5;Parent=Physo157289;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_40 . CDS 452064 452232 . - 0 ID=Physo157289;Parent=Physo157289;rank=4 scaffold_40 . exon 452064 452232 . - . ID=Physo157289.4;Parent=Physo157289;constitutive=1;ensembl_phase=2;rank=4 scaffold_40 . CDS 452263 452543 . - 0 ID=Physo157289;Parent=Physo157289;rank=3 scaffold_40 . exon 452263 452543 . - . ID=Physo157289.3;Parent=Physo157289;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_40 . CDS 452574 453053 . - 0 ID=Physo157289;Parent=Physo157289;rank=2 scaffold_40 . exon 452574 453053 . - . ID=Physo157289.2;Parent=Physo157289;constitutive=1;rank=2 scaffold_40 . CDS 453471 454244 . - 0 ID=Physo157289;Parent=Physo157289;rank=1 scaffold_40 . exon 453471 454244 . - . ID=Physo157289.1;Parent=Physo157289;constitutive=1;rank=1 scaffold_40 . repeat_region 462450 462457 . ? . description=dust scaffold_40 ensembl protein_coding_gene 455603 456982 . + . ID=Physo135784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400121;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 455603 456982 . + . ID=Physo135784;Parent=Physo135784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 455603 456982 . + . ID=Physo135784.1;Parent=Physo135784;constitutive=1;ensembl_phase=-1;rank=1 scaffold_40 . CDS 455843 456982 . + 0 ID=Physo135784;Parent=Physo135784;rank=1 scaffold_40 ensembl protein_coding_gene 462531 464859 . + . ID=Physo135785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400122;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 462531 464859 . + . ID=Physo135785;Parent=Physo135785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 462531 462576 . + 0 ID=Physo135785;Parent=Physo135785;rank=1 scaffold_40 . exon 462531 462576 . + . ID=Physo135785.1;Parent=Physo135785;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 462654 462726 . + 0 ID=Physo135785;Parent=Physo135785;rank=2 scaffold_40 . exon 462654 462726 . + . ID=Physo135785.2;Parent=Physo135785;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 462788 463106 . + 0 ID=Physo135785;Parent=Physo135785;rank=3 scaffold_40 . exon 462788 463106 . + . ID=Physo135785.3;Parent=Physo135785;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 463178 463441 . + 0 ID=Physo135785;Parent=Physo135785;rank=4 scaffold_40 . exon 463178 463441 . + . ID=Physo135785.4;Parent=Physo135785;constitutive=1;rank=4 scaffold_40 . CDS 463627 464583 . + 0 ID=Physo135785;Parent=Physo135785;rank=5 scaffold_40 . exon 463627 464583 . + . ID=Physo135785.5;Parent=Physo135785;constitutive=1;rank=5 scaffold_40 . CDS 464653 464859 . + 0 ID=Physo135785;Parent=Physo135785;rank=6 scaffold_40 . exon 464653 464859 . + . ID=Physo135785.6;Parent=Physo135785;constitutive=1;rank=6 scaffold_40 . biological_region 469184 469190 0.999 - . logic_name=eponine scaffold_40 . biological_region 469969 469969 0.999 - . logic_name=eponine scaffold_40 ensembl protein_coding_gene 465884 466756 . - . ID=Physo135786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400123;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 465884 466756 . - . ID=Physo135786;Parent=Physo135786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 465884 466756 . - 0 ID=Physo135786;Parent=Physo135786;rank=1 scaffold_40 . exon 465884 466756 . - . ID=Physo135786.1;Parent=Physo135786;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 467386 469392 . - . ID=Physo135787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400124;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 467386 469392 . - . ID=Physo135787;Parent=Physo135787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 467386 468551 . - 0 ID=Physo135787;Parent=Physo135787;rank=2 scaffold_40 . exon 467386 468551 . - . ID=Physo135787.2;Parent=Physo135787;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 468627 469392 . - 0 ID=Physo135787;Parent=Physo135787;rank=1 scaffold_40 . exon 468627 469392 . - . ID=Physo135787.1;Parent=Physo135787;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 469594 470729 . + . ID=Physo135788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400125;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 469594 470729 . + . ID=Physo135788;Parent=Physo135788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 469594 469636 . + 0 ID=Physo135788;Parent=Physo135788;rank=1 scaffold_40 . exon 469594 469636 . + . ID=Physo135788.1;Parent=Physo135788;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 469786 470101 . + 0 ID=Physo135788;Parent=Physo135788;rank=2 scaffold_40 . exon 469786 470101 . + . ID=Physo135788.2;Parent=Physo135788;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 470175 470569 . + 0 ID=Physo135788;Parent=Physo135788;rank=3 scaffold_40 . exon 470175 470569 . + . ID=Physo135788.3;Parent=Physo135788;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 470713 470729 . + 0 ID=Physo135788;Parent=Physo135788;rank=4 scaffold_40 . exon 470713 470729 . + . ID=Physo135788.4;Parent=Physo135788;constitutive=1;ensembl_phase=1;rank=4 scaffold_40 ensembl protein_coding_gene 472584 473544 . + . ID=Physo135789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400126;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 472584 473544 . + . ID=Physo135789;Parent=Physo135789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 472584 472825 . + 0 ID=Physo135789;Parent=Physo135789;rank=1 scaffold_40 . exon 472584 472825 . + . ID=Physo135789.1;Parent=Physo135789;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 472908 473544 . + 0 ID=Physo135789;Parent=Physo135789;rank=2 scaffold_40 . exon 472908 473544 . + . ID=Physo135789.2;Parent=Physo135789;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 ensembl protein_coding_gene 473767 474740 . + . ID=Physo135790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400127;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 473767 474740 . + . ID=Physo135790;Parent=Physo135790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 473767 474113 . + 0 ID=Physo135790;Parent=Physo135790;rank=1 scaffold_40 . exon 473767 474113 . + . ID=Physo135790.1;Parent=Physo135790;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 474380 474740 . + 0 ID=Physo135790;Parent=Physo135790;rank=2 scaffold_40 . exon 474380 474740 . + . ID=Physo135790.2;Parent=Physo135790;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . repeat_region 475594 475606 . ? . description=dust scaffold_40 ensembl protein_coding_gene 477191 478737 . + . ID=Physo135791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400128;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 477191 478737 . + . ID=Physo135791;Parent=Physo135791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 477191 478192 . + 0 ID=Physo135791;Parent=Physo135791;rank=1 scaffold_40 . exon 477191 478192 . + . ID=Physo135791.1;Parent=Physo135791;constitutive=1;rank=1 scaffold_40 . CDS 478246 478737 . + 0 ID=Physo135791;Parent=Physo135791;rank=2 scaffold_40 . exon 478246 478737 . + . ID=Physo135791.2;Parent=Physo135791;constitutive=1;rank=2 scaffold_40 ensembl protein_coding_gene 479014 480762 . - . ID=Physo135792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400129;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 479014 480762 . - . ID=Physo135792;Parent=Physo135792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 479014 480762 . - 0 ID=Physo135792;Parent=Physo135792;rank=1 scaffold_40 . exon 479014 480762 . - . ID=Physo135792.1;Parent=Physo135792;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 482255 482698 . + . ID=Physo135793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400130;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 482255 482698 . + . ID=Physo135793;Parent=Physo135793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 482255 482698 . + 0 ID=Physo135793;Parent=Physo135793;rank=1 scaffold_40 . exon 482255 482698 . + . ID=Physo135793.1;Parent=Physo135793;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 483464 484826 . - . ID=Physo157292;biotype=protein_coding;external_name=C_scaffold_40000046;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 483464 484826 . - . ID=Physo157292;Parent=Physo157292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 483464 484122 . - 0 ID=Physo157292;Parent=Physo157292;rank=3 scaffold_40 . exon 483464 484122 . - . ID=Physo157292.3;Parent=Physo157292;constitutive=1;ensembl_phase=1;rank=3 scaffold_40 . CDS 484228 484401 . - 0 ID=Physo157292;Parent=Physo157292;rank=2 scaffold_40 . exon 484228 484401 . - . ID=Physo157292.2;Parent=Physo157292;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 484430 484826 . - 0 ID=Physo157292;Parent=Physo157292;rank=1 scaffold_40 . exon 484430 484826 . - . ID=Physo157292.1;Parent=Physo157292;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . repeat_region 485697 485775 . ? . description=trf scaffold_40 . repeat_region 486918 486978 . ? . description=trf scaffold_40 . repeat_region 486918 486983 . ? . description=trf scaffold_40 . repeat_region 486926 486968 . ? . description=trf scaffold_40 . repeat_region 486931 486962 . ? . description=trf scaffold_40 . repeat_region 486982 487006 . ? . description=trf scaffold_40 . repeat_region 488563 488600 . ? . description=trf scaffold_40 . repeat_region 488563 488600 . + . description=(CACTA)n scaffold_40 . repeat_region 489410 489462 . ? . description=trf scaffold_40 . repeat_region 489410 489470 . ? . description=trf scaffold_40 . repeat_region 489410 489470 . ? . description=trf scaffold_40 . biological_region 490260 490263 0.999 - . logic_name=eponine scaffold_40 . biological_region 490336 490342 0.999 - . logic_name=eponine scaffold_40 . biological_region 490338 490340 0.999 + . logic_name=eponine scaffold_40 . biological_region 490610 490612 0.999 + . logic_name=eponine scaffold_40 . repeat_region 492961 492996 . ? . description=trf scaffold_40 . repeat_region 493744 493776 . ? . description=trf scaffold_40 ensembl protein_coding_gene 486154 487734 . - . ID=Physo135795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400132;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 486154 487734 . - . ID=Physo135795;Parent=Physo135795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 486154 487734 . - 0 ID=Physo135795;Parent=Physo135795;rank=1 scaffold_40 . exon 486154 487734 . - . ID=Physo135795.1;Parent=Physo135795;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 488516 490332 . - . ID=Physo135796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400133;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 488516 490332 . - . ID=Physo135796;Parent=Physo135796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 488516 490332 . - . ID=Physo135796.1;Parent=Physo135796;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_40 . CDS 488629 490332 . - 0 ID=Physo135796;Parent=Physo135796;rank=1 scaffold_40 ensembl protein_coding_gene 492460 494487 . + . ID=Physo135797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400134;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 492460 494487 . + . ID=Physo135797;Parent=Physo135797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 492460 494487 . + 0 ID=Physo135797;Parent=Physo135797;rank=1 scaffold_40 . exon 492460 494487 . + . ID=Physo135797.1;Parent=Physo135797;constitutive=1;rank=1 scaffold_40 . repeat_region 494824 494884 . ? . description=dust scaffold_40 ensembl protein_coding_gene 494765 495933 . + . ID=Physo135798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400135;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 494765 495933 . + . ID=Physo135798;Parent=Physo135798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 494765 495608 . + . ID=Physo135798.1;Parent=Physo135798;constitutive=1;ensembl_phase=-1;rank=1 scaffold_40 . CDS 494790 495608 . + 0 ID=Physo135798;Parent=Physo135798;rank=1 scaffold_40 . CDS 495689 495805 . + 0 ID=Physo135798;Parent=Physo135798;rank=2 scaffold_40 . exon 495689 495933 . + . ID=Physo135798.2;Parent=Physo135798;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_40 ensembl protein_coding_gene 498970 504628 . + . ID=Physo135799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400136;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 498970 504628 . + . ID=Physo135799;Parent=Physo135799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 498970 501016 . + 0 ID=Physo135799;Parent=Physo135799;rank=1 scaffold_40 . exon 498970 501016 . + . ID=Physo135799.1;Parent=Physo135799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . CDS 501094 501189 . + 0 ID=Physo135799;Parent=Physo135799;rank=2 scaffold_40 . exon 501094 501189 . + . ID=Physo135799.2;Parent=Physo135799;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 501271 501330 . + 0 ID=Physo135799;Parent=Physo135799;rank=3 scaffold_40 . exon 501271 501330 . + . ID=Physo135799.3;Parent=Physo135799;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_40 . CDS 501401 502673 . + 0 ID=Physo135799;Parent=Physo135799;rank=4 scaffold_40 . exon 501401 502673 . + . ID=Physo135799.4;Parent=Physo135799;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_40 . CDS 502991 503867 . + 0 ID=Physo135799;Parent=Physo135799;rank=5 scaffold_40 . exon 502991 503867 . + . ID=Physo135799.5;Parent=Physo135799;constitutive=1;ensembl_phase=2;rank=5 scaffold_40 . CDS 504187 504467 . + 0 ID=Physo135799;Parent=Physo135799;rank=6 scaffold_40 . exon 504187 504467 . + . ID=Physo135799.6;Parent=Physo135799;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_40 . CDS 504538 504628 . + 0 ID=Physo135799;Parent=Physo135799;rank=7 scaffold_40 . exon 504538 504628 . + . ID=Physo135799.7;Parent=Physo135799;constitutive=1;ensembl_phase=2;rank=7 scaffold_40 . repeat_region 505451 505486 . ? . description=trf scaffold_40 . repeat_region 507741 507782 . ? . description=trf scaffold_40 ensembl protein_coding_gene 506692 507911 . - . ID=Physo135800;biotype=protein_coding;description=PsAvh155 [Source:UniProtKB/TrEMBL%3BAcc:E0W556];external_name=estExt_fgenesh1_pg.C_400137;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 506692 507911 . - . ID=Physo135800;Parent=Physo135800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 506692 506714 . - 0 ID=Physo135800;Parent=Physo135800;rank=2 scaffold_40 . exon 506692 506714 . - . ID=Physo135800.2;Parent=Physo135800;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 506801 507911 . - 0 ID=Physo135800;Parent=Physo135800;rank=1 scaffold_40 . exon 506801 507911 . - . ID=Physo135800.1;Parent=Physo135800;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . biological_region 518178 518179 0.999 - . logic_name=eponine scaffold_40 . biological_region 518528 518533 0.999 - . logic_name=eponine scaffold_40 . biological_region 519072 519072 0.999 + . logic_name=eponine scaffold_40 . repeat_region 520202 520209 . ? . description=dust scaffold_40 . repeat_region 521094 521119 . ? . description=dust scaffold_40 ensembl protein_coding_gene 518608 520107 . - . ID=Physo135801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400138;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 518608 520107 . - . ID=Physo135801;Parent=Physo135801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 518608 518742 . - 0 ID=Physo135801;Parent=Physo135801;rank=6 scaffold_40 . exon 518608 518742 . - . ID=Physo135801.6;Parent=Physo135801;constitutive=1;rank=6 scaffold_40 . CDS 518803 518970 . - 0 ID=Physo135801;Parent=Physo135801;rank=5 scaffold_40 . exon 518803 518970 . - . ID=Physo135801.5;Parent=Physo135801;constitutive=1;rank=5 scaffold_40 . CDS 518991 519006 . - 0 ID=Physo135801;Parent=Physo135801;rank=4 scaffold_40 . exon 518991 519006 . - . ID=Physo135801.4;Parent=Physo135801;constitutive=1;ensembl_phase=2;rank=4 scaffold_40 . CDS 519256 519369 . - 0 ID=Physo135801;Parent=Physo135801;rank=3 scaffold_40 . exon 519256 519369 . - . ID=Physo135801.3;Parent=Physo135801;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_40 . CDS 519534 519582 . - 0 ID=Physo135801;Parent=Physo135801;rank=2 scaffold_40 . exon 519534 519582 . - . ID=Physo135801.2;Parent=Physo135801;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 519939 520107 . - 0 ID=Physo135801;Parent=Physo135801;rank=1 scaffold_40 . exon 519939 520107 . - . ID=Physo135801.1;Parent=Physo135801;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 . repeat_region 529661 529698 . + . description=(CATTG)n scaffold_40 . repeat_region 530311 530344 . ? . description=trf scaffold_40 ensembl protein_coding_gene 524883 527196 . + . ID=Physo135802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400139;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 524883 527196 . + . ID=Physo135802;Parent=Physo135802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 524883 524891 . + 0 ID=Physo135802;Parent=Physo135802;rank=1 scaffold_40 . exon 524883 524891 . + . ID=Physo135802.1;Parent=Physo135802;constitutive=1;rank=1 scaffold_40 . CDS 525071 525824 . + 0 ID=Physo135802;Parent=Physo135802;rank=2 scaffold_40 . exon 525071 525824 . + . ID=Physo135802.2;Parent=Physo135802;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_40 . CDS 526233 526966 . + 0 ID=Physo135802;Parent=Physo135802;rank=3 scaffold_40 . exon 526233 526966 . + . ID=Physo135802.3;Parent=Physo135802;constitutive=1;ensembl_phase=1;rank=3 scaffold_40 . CDS 527191 527196 . + 0 ID=Physo135802;Parent=Physo135802;rank=4 scaffold_40 . exon 527191 527196 . + . ID=Physo135802.4;Parent=Physo135802;constitutive=1;rank=4 scaffold_40 ensembl protein_coding_gene 527497 530088 . - . ID=Physo135803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400140;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 527497 530088 . - . ID=Physo135803;Parent=Physo135803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 527497 527904 . - 0 ID=Physo135803;Parent=Physo135803;rank=6 scaffold_40 . exon 527497 527904 . - . ID=Physo135803.6;Parent=Physo135803;constitutive=1;rank=6 scaffold_40 . CDS 527972 528493 . - 0 ID=Physo135803;Parent=Physo135803;rank=5 scaffold_40 . exon 527972 528493 . - . ID=Physo135803.5;Parent=Physo135803;constitutive=1;rank=5 scaffold_40 . CDS 528565 528721 . - 0 ID=Physo135803;Parent=Physo135803;rank=4 scaffold_40 . exon 528565 528721 . - . ID=Physo135803.4;Parent=Physo135803;constitutive=1;ensembl_phase=2;rank=4 scaffold_40 . CDS 528787 529619 . - 0 ID=Physo135803;Parent=Physo135803;rank=3 scaffold_40 . exon 528787 529619 . - . ID=Physo135803.3;Parent=Physo135803;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_40 . CDS 529705 529889 . - 0 ID=Physo135803;Parent=Physo135803;rank=2 scaffold_40 . exon 529705 529889 . - . ID=Physo135803.2;Parent=Physo135803;constitutive=1;ensembl_phase=1;rank=2 scaffold_40 . CDS 529983 530088 . - 0 ID=Physo135803;Parent=Physo135803;rank=1 scaffold_40 . exon 529983 530088 . - . ID=Physo135803.1;Parent=Physo135803;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 533072 534751 . - . ID=Physo135805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400142;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 533072 534751 . - . ID=Physo135805;Parent=Physo135805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 533072 534751 . - 0 ID=Physo135805;Parent=Physo135805;rank=1 scaffold_40 . exon 533072 534751 . - . ID=Physo135805.1;Parent=Physo135805;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 531333 533018 . + . ID=Physo157297;biotype=protein_coding;external_name=C_scaffold_40000051;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 531333 533018 . + . ID=Physo157297;Parent=Physo157297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 531333 532435 . + 0 ID=Physo157297;Parent=Physo157297;rank=1 scaffold_40 . exon 531333 532435 . + . ID=Physo157297.1;Parent=Physo157297;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 . CDS 532457 533018 . + 0 ID=Physo157297;Parent=Physo157297;rank=2 scaffold_40 . exon 532457 533018 . + . ID=Physo157297.2;Parent=Physo157297;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . biological_region 534692 534696 0.999 - . logic_name=eponine scaffold_40 . repeat_region 534770 534795 . ? . description=dust scaffold_40 . repeat_region 535188 535195 . ? . description=dust scaffold_40 . biological_region 537904 537904 0.999 - . logic_name=eponine scaffold_40 . biological_region 539718 539723 0.999 - . logic_name=eponine scaffold_40 . repeat_region 539830 541600 . - . description=GypsyPi-1c_I-int scaffold_40 . repeat_region 541812 543804 . - . description=GypsyPi-1c_I-int scaffold_40 . biological_region 543291 543294 0.999 + . logic_name=eponine scaffold_40 . biological_region 543309 543313 0.999 - . logic_name=eponine scaffold_40 . biological_region 543569 543570 0.999 - . logic_name=eponine scaffold_40 . repeat_region 543806 544110 . - . description=GypsyPi-1c_LTR scaffold_40 ensembl protein_coding_gene 535587 536164 . - . ID=Physo135806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400143;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 535587 536164 . - . ID=Physo135806;Parent=Physo135806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 535587 535920 . - 0 ID=Physo135806;Parent=Physo135806;rank=2 scaffold_40 . exon 535587 535920 . - . ID=Physo135806.2;Parent=Physo135806;constitutive=1;ensembl_phase=2;rank=2 scaffold_40 . CDS 536025 536164 . - 0 ID=Physo135806;Parent=Physo135806;rank=1 scaffold_40 . exon 536025 536164 . - . ID=Physo135806.1;Parent=Physo135806;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_40 ensembl protein_coding_gene 537154 538413 . - . ID=Physo135807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400144;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 537154 538413 . - . ID=Physo135807;Parent=Physo135807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . exon 537154 537745 . - . ID=Physo135807.3;Parent=Physo135807;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_40 . exon 537826 537995 . - . ID=Physo135807.2;Parent=Physo135807;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_40 . CDS 537858 537995 . - 0 ID=Physo135807;Parent=Physo135807;rank=2 scaffold_40 . CDS 538072 538413 . - 0 ID=Physo135807;Parent=Physo135807;rank=1 scaffold_40 . exon 538072 538413 . - . ID=Physo135807.1;Parent=Physo135807;constitutive=1;rank=1 scaffold_40 ensembl protein_coding_gene 539559 543660 . - . ID=Physo135808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400145;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 539559 543660 . - . ID=Physo135808;Parent=Physo135808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 539559 539735 . - 0 ID=Physo135808;Parent=Physo135808;rank=6 scaffold_40 . exon 539559 539735 . - . ID=Physo135808.6;Parent=Physo135808;constitutive=1;rank=6 scaffold_40 . CDS 539856 541385 . - 0 ID=Physo135808;Parent=Physo135808;rank=5 scaffold_40 . exon 539856 541385 . - . ID=Physo135808.5;Parent=Physo135808;constitutive=1;rank=5 scaffold_40 . CDS 541642 541884 . - 0 ID=Physo135808;Parent=Physo135808;rank=4 scaffold_40 . exon 541642 541884 . - . ID=Physo135808.4;Parent=Physo135808;constitutive=1;rank=4 scaffold_40 . CDS 542059 542191 . - 0 ID=Physo135808;Parent=Physo135808;rank=3 scaffold_40 . exon 542059 542191 . - . ID=Physo135808.3;Parent=Physo135808;constitutive=1;ensembl_phase=2;rank=3 scaffold_40 . CDS 542218 542647 . - 0 ID=Physo135808;Parent=Physo135808;rank=2 scaffold_40 . exon 542218 542647 . - . ID=Physo135808.2;Parent=Physo135808;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_40 . CDS 542835 543660 . - 0 ID=Physo135808;Parent=Physo135808;rank=1 scaffold_40 . exon 542835 543660 . - . ID=Physo135808.1;Parent=Physo135808;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_40 ensembl protein_coding_gene 552462 553636 . + . ID=Physo135809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_400146;logic_name=jgi_physo1_1 scaffold_40 ensembl transcript 552462 553636 . + . ID=Physo135809;Parent=Physo135809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_40 . CDS 552462 552890 . + 0 ID=Physo135809;Parent=Physo135809;rank=1 scaffold_40 . exon 552462 552890 . + . ID=Physo135809.1;Parent=Physo135809;constitutive=1;rank=1 scaffold_40 . CDS 552923 553636 . + 0 ID=Physo135809;Parent=Physo135809;rank=2 scaffold_40 . exon 552923 553636 . + . ID=Physo135809.2;Parent=Physo135809;constitutive=1;rank=2 ##gff-version 3 ##sequence-region scaffold_38 1 580019 scaffold_38 . repeat_region 1 393 . ? . description=dust scaffold_38 . repeat_region 1 446 . ? . description=trf scaffold_38 . repeat_region 1038 2698 . ? . description=dust scaffold_38 . repeat_region 2310 2752 . ? . description=trf scaffold_38 . repeat_region 3352 6836 . ? . description=dust scaffold_38 . repeat_region 6837 7274 . + . description=GypsyPi-1c_I-int scaffold_38 . biological_region 7960 7964 0.999 - . logic_name=eponine scaffold_38 . repeat_region 8089 9600 . ? . description=dust scaffold_38 . repeat_region 9673 9695 . ? . description=trf scaffold_38 . repeat_region 9695 10068 . ? . description=trf scaffold_38 ensembl protein_coding_gene 6901 7633 . + . ID=Physo135367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380001;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 6901 7633 . + . ID=Physo135367;Parent=Physo135367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 6901 7315 . + 0 ID=Physo135367;Parent=Physo135367;rank=1 scaffold_38 . exon 6901 7315 . + . ID=Physo135367.1;Parent=Physo135367;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 7382 7586 . + 0 ID=Physo135367;Parent=Physo135367;rank=2 scaffold_38 . exon 7382 7586 . + . ID=Physo135367.2;Parent=Physo135367;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . CDS 7627 7633 . + 0 ID=Physo135367;Parent=Physo135367;rank=3 scaffold_38 . exon 7627 7633 . + . ID=Physo135367.3;Parent=Physo135367;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . biological_region 21627 21628 0.999 - . logic_name=eponine scaffold_38 . repeat_region 24827 24844 . ? . description=dust scaffold_38 . repeat_region 24923 24964 . ? . description=trf scaffold_38 . repeat_region 27109 27130 . ? . description=dust scaffold_38 . repeat_region 27141 27155 . ? . description=dust scaffold_38 . repeat_region 27533 27788 . + . description=Sola3-3_PS scaffold_38 . repeat_region 27698 27705 . ? . description=dust scaffold_38 . repeat_region 28208 28219 . ? . description=dust scaffold_38 ensembl protein_coding_gene 19822 23708 . - . ID=Physo135368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380002;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 19822 23708 . - . ID=Physo135368;Parent=Physo135368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 19822 20036 . - 0 ID=Physo135368;Parent=Physo135368;rank=5 scaffold_38 . exon 19822 20036 . - . ID=Physo135368.5;Parent=Physo135368;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 20075 21626 . - 0 ID=Physo135368;Parent=Physo135368;rank=4 scaffold_38 . exon 20075 21626 . - . ID=Physo135368.4;Parent=Physo135368;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 21811 21855 . - 0 ID=Physo135368;Parent=Physo135368;rank=3 scaffold_38 . exon 21811 21855 . - . ID=Physo135368.3;Parent=Physo135368;constitutive=1;rank=3 scaffold_38 . CDS 21885 22376 . - 0 ID=Physo135368;Parent=Physo135368;rank=2 scaffold_38 . exon 21885 22376 . - . ID=Physo135368.2;Parent=Physo135368;constitutive=1;rank=2 scaffold_38 . CDS 22698 23708 . - 0 ID=Physo135368;Parent=Physo135368;rank=1 scaffold_38 . exon 22698 23708 . - . ID=Physo135368.1;Parent=Physo135368;constitutive=1;rank=1 scaffold_38 . repeat_region 36459 36756 . + . description=GypsyPi-1c_I-int scaffold_38 . repeat_region 36758 37652 . + . description=GypsyPi-1c_I-int scaffold_38 ensembl protein_coding_gene 35128 38141 . + . ID=Physo135369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380003;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 35128 38141 . + . ID=Physo135369;Parent=Physo135369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 35128 36551 . + 0 ID=Physo135369;Parent=Physo135369;rank=1 scaffold_38 . exon 35128 36551 . + . ID=Physo135369.1;Parent=Physo135369;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 36781 37832 . + 0 ID=Physo135369;Parent=Physo135369;rank=2 scaffold_38 . exon 36781 37832 . + . ID=Physo135369.2;Parent=Physo135369;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 38083 38141 . + 0 ID=Physo135369;Parent=Physo135369;rank=3 scaffold_38 . exon 38083 38141 . + . ID=Physo135369.3;Parent=Physo135369;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . repeat_region 39459 39550 . ? . description=dust scaffold_38 . biological_region 40217 40220 0.999 + . logic_name=eponine scaffold_38 . biological_region 41446 41451 0.999 - . logic_name=eponine scaffold_38 . biological_region 41971 41976 0.999 - . logic_name=eponine scaffold_38 . biological_region 43697 43698 0.999 + . logic_name=eponine scaffold_38 . biological_region 43715 43716 0.999 - . logic_name=eponine scaffold_38 . biological_region 44143 44145 0.999 - . logic_name=eponine scaffold_38 . biological_region 44185 44186 0.999 + . logic_name=eponine scaffold_38 . repeat_region 46294 46306 . ? . description=dust scaffold_38 ensembl protein_coding_gene 39595 41121 . + . ID=Physo135370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380004;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 39595 41121 . + . ID=Physo135370;Parent=Physo135370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 39595 40137 . + 0 ID=Physo135370;Parent=Physo135370;rank=1 scaffold_38 . exon 39595 40137 . + . ID=Physo135370.1;Parent=Physo135370;constitutive=1;rank=1 scaffold_38 . CDS 40188 41074 . + 0 ID=Physo135370;Parent=Physo135370;rank=2 scaffold_38 . exon 40188 41074 . + . ID=Physo135370.2;Parent=Physo135370;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 41115 41121 . + 0 ID=Physo135370;Parent=Physo135370;rank=3 scaffold_38 . exon 41115 41121 . + . ID=Physo135370.3;Parent=Physo135370;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 ensembl protein_coding_gene 41373 44456 . - . ID=Physo135371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380005;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 41373 44456 . - . ID=Physo135371;Parent=Physo135371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 41373 41688 . - 0 ID=Physo135371;Parent=Physo135371;rank=4 scaffold_38 . exon 41373 41688 . - . ID=Physo135371.4;Parent=Physo135371;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 41862 41896 . - 0 ID=Physo135371;Parent=Physo135371;rank=3 scaffold_38 . exon 41862 41896 . - . ID=Physo135371.3;Parent=Physo135371;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_38 . CDS 42300 42827 . - 0 ID=Physo135371;Parent=Physo135371;rank=2 scaffold_38 . exon 42300 42827 . - . ID=Physo135371.2;Parent=Physo135371;constitutive=1;rank=2 scaffold_38 . CDS 42945 44456 . - 0 ID=Physo135371;Parent=Physo135371;rank=1 scaffold_38 . exon 42945 44456 . - . ID=Physo135371.1;Parent=Physo135371;constitutive=1;rank=1 scaffold_38 . repeat_region 49215 49601 . + . description=Gypsy-1-I_PI-int scaffold_38 . repeat_region 55175 55237 . ? . description=trf scaffold_38 ensembl protein_coding_gene 56466 57321 . + . ID=Physo135372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380006;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 56466 57321 . + . ID=Physo135372;Parent=Physo135372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 56466 56702 . + 0 ID=Physo135372;Parent=Physo135372;rank=1 scaffold_38 . exon 56466 56702 . + . ID=Physo135372.1;Parent=Physo135372;constitutive=1;rank=1 scaffold_38 . CDS 56775 56888 . + 0 ID=Physo135372;Parent=Physo135372;rank=2 scaffold_38 . exon 56775 56888 . + . ID=Physo135372.2;Parent=Physo135372;constitutive=1;rank=2 scaffold_38 . CDS 56928 57167 . + 0 ID=Physo135372;Parent=Physo135372;rank=3 scaffold_38 . exon 56928 57167 . + . ID=Physo135372.3;Parent=Physo135372;constitutive=1;rank=3 scaffold_38 . CDS 57190 57321 . + 0 ID=Physo135372;Parent=Physo135372;rank=4 scaffold_38 . exon 57190 57321 . + . ID=Physo135372.4;Parent=Physo135372;constitutive=1;rank=4 scaffold_38 ensembl protein_coding_gene 58077 59627 . - . ID=Physo135373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380007;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 58077 59627 . - . ID=Physo135373;Parent=Physo135373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 58077 58201 . - 0 ID=Physo135373;Parent=Physo135373;rank=3 scaffold_38 . exon 58077 58201 . - . ID=Physo135373.3;Parent=Physo135373;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 58358 58499 . - 0 ID=Physo135373;Parent=Physo135373;rank=2 scaffold_38 . exon 58358 58499 . - . ID=Physo135373.2;Parent=Physo135373;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 58593 59627 . - 0 ID=Physo135373;Parent=Physo135373;rank=1 scaffold_38 . exon 58593 59627 . - . ID=Physo135373.1;Parent=Physo135373;constitutive=1;rank=1 scaffold_38 . biological_region 60208 60210 0.999 - . logic_name=eponine scaffold_38 . biological_region 61546 61549 0.999 + . logic_name=eponine scaffold_38 . biological_region 61698 61699 0.999 + . logic_name=eponine scaffold_38 . biological_region 61789 61789 0.999 - . logic_name=eponine scaffold_38 . biological_region 62862 62864 0.999 - . logic_name=eponine scaffold_38 . biological_region 63687 63691 0.999 - . logic_name=eponine scaffold_38 . biological_region 64298 64302 0.999 + . logic_name=eponine scaffold_38 . repeat_region 65354 65370 . ? . description=dust scaffold_38 . biological_region 66107 66115 0.999 + . logic_name=eponine scaffold_38 . repeat_region 66572 66588 . ? . description=dust scaffold_38 . biological_region 66626 66632 0.999 + . logic_name=eponine scaffold_38 . biological_region 66661 66665 0.999 - . logic_name=eponine scaffold_38 . biological_region 66731 66736 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 60889 61986 . - . ID=Physo135374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380008;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 60889 61986 . - . ID=Physo135374;Parent=Physo135374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 60889 61986 . - 0 ID=Physo135374;Parent=Physo135374;rank=1 scaffold_38 . exon 60889 61986 . - . ID=Physo135374.1;Parent=Physo135374;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 65379 65970 . + . ID=Physo135375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380009;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 65379 65970 . + . ID=Physo135375;Parent=Physo135375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 65379 65894 . + 0 ID=Physo135375;Parent=Physo135375;rank=1 scaffold_38 . exon 65379 65970 . + . ID=Physo135375.1;Parent=Physo135375;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_38 ensembl protein_coding_gene 67151 71514 . + . ID=Physo135376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380010;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 67151 71514 . + . ID=Physo135376;Parent=Physo135376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 67151 71461 . + 0 ID=Physo135376;Parent=Physo135376;rank=1 scaffold_38 . exon 67151 71514 . + . ID=Physo135376.1;Parent=Physo135376;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_38 . repeat_region 78431 78481 . ? . description=trf scaffold_38 . repeat_region 78477 78556 . ? . description=trf scaffold_38 . repeat_region 78481 78585 . ? . description=trf scaffold_38 . repeat_region 78504 78671 . + . description=(TCG)n scaffold_38 . repeat_region 78525 78585 . ? . description=trf scaffold_38 . repeat_region 78555 78637 . ? . description=trf scaffold_38 . repeat_region 78561 78639 . ? . description=trf scaffold_38 ensembl tRNA_gene 77211 77283 . - . ID=EPrPSOG00000000095;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_38 ensembl transcript 77211 77283 . - . ID=EPrPSOT00000000095;Parent=EPrPSOG00000000095;biotype=tRNA;logic_name=ncrna_eg scaffold_38 . exon 77211 77283 . - . ID=EPrPSOE00000000095;Parent=EPrPSOT00000000095;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 72923 73981 . - . ID=Physo135377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380011;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 72923 73981 . - . ID=Physo135377;Parent=Physo135377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 72923 73981 . - 0 ID=Physo135377;Parent=Physo135377;rank=1 scaffold_38 . exon 72923 73981 . - . ID=Physo135377.1;Parent=Physo135377;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 77479 78964 . - . ID=Physo135378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380012;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 77479 78964 . - . ID=Physo135378;Parent=Physo135378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 77479 78964 . - . ID=Physo135378.1;Parent=Physo135378;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_38 . CDS 77705 78817 . - 0 ID=Physo135378;Parent=Physo135378;rank=1 scaffold_38 . repeat_region 78759 78798 . ? . description=dust scaffold_38 . biological_region 79026 79026 0.999 + . logic_name=eponine scaffold_38 . biological_region 79151 79152 0.999 - . logic_name=eponine scaffold_38 . biological_region 79192 79194 0.999 + . logic_name=eponine scaffold_38 . biological_region 79273 79275 0.999 + . logic_name=eponine scaffold_38 . biological_region 79286 79291 0.999 - . logic_name=eponine scaffold_38 . repeat_region 79597 79646 . ? . description=dust scaffold_38 . biological_region 79871 79876 0.999 - . logic_name=eponine scaffold_38 . biological_region 83465 83467 0.999 - . logic_name=eponine scaffold_38 . repeat_region 83489 83496 . ? . description=dust scaffold_38 . biological_region 83554 83556 0.999 - . logic_name=eponine scaffold_38 . biological_region 83757 83762 0.999 - . logic_name=eponine scaffold_38 . biological_region 85708 85713 0.999 + . logic_name=eponine scaffold_38 . biological_region 85787 85789 0.999 + . logic_name=eponine scaffold_38 . biological_region 85838 85846 0.999 - . logic_name=eponine scaffold_38 . biological_region 85861 85865 0.999 - . logic_name=eponine scaffold_38 . biological_region 85880 85883 0.999 - . logic_name=eponine scaffold_38 . biological_region 86065 86069 0.999 + . logic_name=eponine scaffold_38 ensembl protein_coding_gene 84194 85187 . + . ID=Physo117067;biotype=protein_coding;external_name=estExt_Genewise1.C_380034;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 84194 85187 . + . ID=Physo117067;Parent=Physo117067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 84194 84210 . + . ID=Physo117067.1;Parent=Physo117067;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_38 . exon 84326 84393 . + . ID=Physo117067.2;Parent=Physo117067;constitutive=1;ensembl_phase=-1;rank=2 scaffold_38 . CDS 84391 84393 . + 0 ID=Physo117067;Parent=Physo117067;rank=1 scaffold_38 . CDS 84497 85114 . + 0 ID=Physo117067;Parent=Physo117067;rank=2 scaffold_38 . exon 84497 85187 . + . ID=Physo117067.3;Parent=Physo117067;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_38 ensembl protein_coding_gene 81070 84206 . - . ID=Physo135379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380013;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 81070 84206 . - . ID=Physo135379;Parent=Physo135379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 81070 82130 . - 0 ID=Physo135379;Parent=Physo135379;rank=6 scaffold_38 . exon 81070 82130 . - . ID=Physo135379.6;Parent=Physo135379;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 82647 83019 . - 0 ID=Physo135379;Parent=Physo135379;rank=5 scaffold_38 . exon 82647 83019 . - . ID=Physo135379.5;Parent=Physo135379;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_38 . CDS 83078 83230 . - 0 ID=Physo135379;Parent=Physo135379;rank=4 scaffold_38 . exon 83078 83230 . - . ID=Physo135379.4;Parent=Physo135379;constitutive=1;rank=4 scaffold_38 . CDS 83321 83809 . - 0 ID=Physo135379;Parent=Physo135379;rank=3 scaffold_38 . exon 83321 83809 . - . ID=Physo135379.3;Parent=Physo135379;constitutive=1;rank=3 scaffold_38 . CDS 83877 84111 . - 0 ID=Physo135379;Parent=Physo135379;rank=2 scaffold_38 . exon 83877 84111 . - . ID=Physo135379.2;Parent=Physo135379;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 84187 84206 . - 0 ID=Physo135379;Parent=Physo135379;rank=1 scaffold_38 . exon 84187 84206 . - . ID=Physo135379.1;Parent=Physo135379;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 85710 89082 . + . ID=Physo135381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380015;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 85710 89082 . + . ID=Physo135381;Parent=Physo135381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 85710 88964 . + 0 ID=Physo135381;Parent=Physo135381;rank=1 scaffold_38 . exon 85710 89082 . + . ID=Physo135381.1;Parent=Physo135381;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_38 . repeat_region 95951 96023 . ? . description=trf scaffold_38 ensembl protein_coding_gene 89119 89738 . - . ID=Physo135382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380016;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 89119 89738 . - . ID=Physo135382;Parent=Physo135382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 89119 89459 . - 0 ID=Physo135382;Parent=Physo135382;rank=2 scaffold_38 . exon 89119 89459 . - . ID=Physo135382.2;Parent=Physo135382;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 89534 89738 . - 0 ID=Physo135382;Parent=Physo135382;rank=1 scaffold_38 . exon 89534 89738 . - . ID=Physo135382.1;Parent=Physo135382;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 90074 90994 . - . ID=Physo135383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380017;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 90074 90994 . - . ID=Physo135383;Parent=Physo135383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 90074 90988 . - 0 ID=Physo135383;Parent=Physo135383;rank=1 scaffold_38 . exon 90074 90994 . - . ID=Physo135383.1;Parent=Physo135383;constitutive=1;ensembl_phase=-1;rank=1 scaffold_38 ensembl protein_coding_gene 91157 92860 . + . ID=Physo135384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380018;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 91157 92860 . + . ID=Physo135384;Parent=Physo135384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 91157 91311 . + 0 ID=Physo135384;Parent=Physo135384;rank=1 scaffold_38 . exon 91157 91311 . + . ID=Physo135384.1;Parent=Physo135384;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 91394 91628 . + 0 ID=Physo135384;Parent=Physo135384;rank=2 scaffold_38 . exon 91394 91628 . + . ID=Physo135384.2;Parent=Physo135384;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 91712 91777 . + 0 ID=Physo135384;Parent=Physo135384;rank=3 scaffold_38 . exon 91712 91777 . + . ID=Physo135384.3;Parent=Physo135384;constitutive=1;rank=3 scaffold_38 . CDS 91852 92003 . + 0 ID=Physo135384;Parent=Physo135384;rank=4 scaffold_38 . exon 91852 92003 . + . ID=Physo135384.4;Parent=Physo135384;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_38 . CDS 92081 92258 . + 0 ID=Physo135384;Parent=Physo135384;rank=5 scaffold_38 . exon 92081 92258 . + . ID=Physo135384.5;Parent=Physo135384;constitutive=1;ensembl_phase=2;rank=5 scaffold_38 . CDS 92343 92448 . + 0 ID=Physo135384;Parent=Physo135384;rank=6 scaffold_38 . exon 92343 92448 . + . ID=Physo135384.6;Parent=Physo135384;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_38 . CDS 92515 92753 . + 0 ID=Physo135384;Parent=Physo135384;rank=7 scaffold_38 . exon 92515 92860 . + . ID=Physo135384.7;Parent=Physo135384;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_38 ensembl protein_coding_gene 97104 98040 . - . ID=Physo135385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380019;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 97104 98040 . - . ID=Physo135385;Parent=Physo135385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 97104 97190 . - 0 ID=Physo135385;Parent=Physo135385;rank=3 scaffold_38 . exon 97104 97190 . - . ID=Physo135385.3;Parent=Physo135385;constitutive=1;rank=3 scaffold_38 . CDS 97259 97981 . - 0 ID=Physo135385;Parent=Physo135385;rank=2 scaffold_38 . exon 97259 97981 . - . ID=Physo135385.2;Parent=Physo135385;constitutive=1;rank=2 scaffold_38 . CDS 98020 98040 . - 0 ID=Physo135385;Parent=Physo135385;rank=1 scaffold_38 . exon 98020 98040 . - . ID=Physo135385.1;Parent=Physo135385;constitutive=1;rank=1 scaffold_38 . repeat_region 99460 99467 . ? . description=dust scaffold_38 . biological_region 103007 103008 0.999 + . logic_name=eponine scaffold_38 . biological_region 103118 103123 0.999 - . logic_name=eponine scaffold_38 . biological_region 104208 104212 0.999 + . logic_name=eponine scaffold_38 . biological_region 104230 104237 0.999 + . logic_name=eponine scaffold_38 . biological_region 104320 104326 0.999 - . logic_name=eponine scaffold_38 . biological_region 104366 104368 0.999 - . logic_name=eponine scaffold_38 . biological_region 104617 104622 0.999 + . logic_name=eponine scaffold_38 . biological_region 104791 104793 0.999 + . logic_name=eponine scaffold_38 . biological_region 104798 104800 0.999 - . logic_name=eponine scaffold_38 . biological_region 104877 104883 0.999 - . logic_name=eponine scaffold_38 . biological_region 104984 104984 0.999 - . logic_name=eponine scaffold_38 . biological_region 105006 105007 0.999 + . logic_name=eponine scaffold_38 . biological_region 105036 105041 0.999 - . logic_name=eponine scaffold_38 . repeat_region 106477 106487 . ? . description=dust scaffold_38 . repeat_region 106797 106812 . ? . description=dust scaffold_38 ensembl protein_coding_gene 98494 99425 . + . ID=Physo135386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380020;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 98494 99425 . + . ID=Physo135386;Parent=Physo135386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 98494 99052 . + 0 ID=Physo135386;Parent=Physo135386;rank=1 scaffold_38 . exon 98494 99052 . + . ID=Physo135386.1;Parent=Physo135386;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 99130 99425 . + 0 ID=Physo135386;Parent=Physo135386;rank=2 scaffold_38 . exon 99130 99425 . + . ID=Physo135386.2;Parent=Physo135386;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 ensembl protein_coding_gene 100947 101876 . - . ID=Physo135387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380021;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 100947 101876 . - . ID=Physo135387;Parent=Physo135387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 100947 101876 . - 0 ID=Physo135387;Parent=Physo135387;rank=1 scaffold_38 . exon 100947 101876 . - . ID=Physo135387.1;Parent=Physo135387;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 102191 103449 . + . ID=Physo135388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380022;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 102191 103449 . + . ID=Physo135388;Parent=Physo135388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 102191 102259 . + 0 ID=Physo135388;Parent=Physo135388;rank=1 scaffold_38 . exon 102191 102259 . + . ID=Physo135388.1;Parent=Physo135388;constitutive=1;rank=1 scaffold_38 . CDS 102344 102442 . + 0 ID=Physo135388;Parent=Physo135388;rank=2 scaffold_38 . exon 102344 102442 . + . ID=Physo135388.2;Parent=Physo135388;constitutive=1;rank=2 scaffold_38 . CDS 102507 103217 . + 0 ID=Physo135388;Parent=Physo135388;rank=3 scaffold_38 . exon 102507 103217 . + . ID=Physo135388.3;Parent=Physo135388;constitutive=1;rank=3 scaffold_38 . CDS 103294 103449 . + 0 ID=Physo135388;Parent=Physo135388;rank=4 scaffold_38 . exon 103294 103449 . + . ID=Physo135388.4;Parent=Physo135388;constitutive=1;rank=4 scaffold_38 . repeat_region 110092 110136 . ? . description=trf scaffold_38 ensembl protein_coding_gene 109637 110744 . + . ID=Physo135389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380023;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 109637 110744 . + . ID=Physo135389;Parent=Physo135389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 109637 110497 . + 0 ID=Physo135389;Parent=Physo135389;rank=1 scaffold_38 . exon 109637 110744 . + . ID=Physo135389.1;Parent=Physo135389;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_38 ensembl protein_coding_gene 111343 115619 . + . ID=Physo157214;biotype=protein_coding;external_name=C_scaffold_38000003;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 111343 115619 . + . ID=Physo157214;Parent=Physo157214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 111343 111431 . + 0 ID=Physo157214;Parent=Physo157214;rank=1 scaffold_38 . exon 111343 111431 . + . ID=Physo157214.1;Parent=Physo157214;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 111528 112091 . + 0 ID=Physo157214;Parent=Physo157214;rank=2 scaffold_38 . exon 111528 112091 . + . ID=Physo157214.2;Parent=Physo157214;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 112374 112490 . + 0 ID=Physo157214;Parent=Physo157214;rank=3 scaffold_38 . exon 112374 112490 . + . ID=Physo157214.3;Parent=Physo157214;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_38 . CDS 112695 113036 . + 0 ID=Physo157214;Parent=Physo157214;rank=4 scaffold_38 . exon 112695 113036 . + . ID=Physo157214.4;Parent=Physo157214;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_38 . CDS 113206 113449 . + 0 ID=Physo157214;Parent=Physo157214;rank=5 scaffold_38 . exon 113206 113449 . + . ID=Physo157214.5;Parent=Physo157214;constitutive=1;ensembl_phase=2;rank=5 scaffold_38 . CDS 113513 113625 . + 0 ID=Physo157214;Parent=Physo157214;rank=6 scaffold_38 . exon 113513 113625 . + . ID=Physo157214.6;Parent=Physo157214;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_38 . CDS 113710 114282 . + 0 ID=Physo157214;Parent=Physo157214;rank=7 scaffold_38 . exon 113710 114282 . + . ID=Physo157214.7;Parent=Physo157214;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_38 . CDS 114352 114424 . + 0 ID=Physo157214;Parent=Physo157214;rank=8 scaffold_38 . exon 114352 114424 . + . ID=Physo157214.8;Parent=Physo157214;constitutive=1;ensembl_phase=2;rank=8 scaffold_38 . CDS 114495 115619 . + 0 ID=Physo157214;Parent=Physo157214;rank=9 scaffold_38 . exon 114495 115619 . + . ID=Physo157214.9;Parent=Physo157214;constitutive=1;rank=9 scaffold_38 ensembl protein_coding_gene 115928 116757 . - . ID=Physo157216;biotype=protein_coding;external_name=C_scaffold_38000005;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 115928 116757 . - . ID=Physo157216;Parent=Physo157216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 115928 116052 . - 0 ID=Physo157216;Parent=Physo157216;rank=5 scaffold_38 . exon 115928 116052 . - . ID=Physo157216.5;Parent=Physo157216;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 116086 116280 . - 0 ID=Physo157216;Parent=Physo157216;rank=4 scaffold_38 . exon 116086 116280 . - . ID=Physo157216.4;Parent=Physo157216;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 116350 116428 . - 0 ID=Physo157216;Parent=Physo157216;rank=3 scaffold_38 . exon 116350 116428 . - . ID=Physo157216.3;Parent=Physo157216;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 116493 116575 . - 0 ID=Physo157216;Parent=Physo157216;rank=2 scaffold_38 . exon 116493 116575 . - . ID=Physo157216.2;Parent=Physo157216;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 116661 116757 . - 0 ID=Physo157216;Parent=Physo157216;rank=1 scaffold_38 . exon 116661 116757 . - . ID=Physo157216.1;Parent=Physo157216;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 117099 117938 . - . ID=Physo157219;biotype=protein_coding;external_name=C_scaffold_38000008;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 117099 117938 . - . ID=Physo157219;Parent=Physo157219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 117099 117304 . - 0 ID=Physo157219;Parent=Physo157219;rank=5 scaffold_38 . exon 117099 117304 . - . ID=Physo157219.5;Parent=Physo157219;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 117371 117452 . - 0 ID=Physo157219;Parent=Physo157219;rank=4 scaffold_38 . exon 117371 117452 . - . ID=Physo157219.4;Parent=Physo157219;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 117528 117584 . - 0 ID=Physo157219;Parent=Physo157219;rank=3 scaffold_38 . exon 117528 117584 . - . ID=Physo157219.3;Parent=Physo157219;constitutive=1;rank=3 scaffold_38 . CDS 117677 117746 . - 0 ID=Physo157219;Parent=Physo157219;rank=2 scaffold_38 . exon 117677 117746 . - . ID=Physo157219.2;Parent=Physo157219;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 117811 117938 . - 0 ID=Physo157219;Parent=Physo157219;rank=1 scaffold_38 . exon 117811 117938 . - . ID=Physo157219.1;Parent=Physo157219;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . biological_region 118464 118465 0.999 + . logic_name=eponine scaffold_38 . biological_region 123511 123514 0.999 + . logic_name=eponine scaffold_38 . biological_region 123541 123543 0.999 + . logic_name=eponine scaffold_38 . biological_region 123572 123578 0.999 + . logic_name=eponine scaffold_38 . biological_region 123641 123644 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 124679 126122 . + . ID=Physo135397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380031;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 124679 126122 . + . ID=Physo135397;Parent=Physo135397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 124679 125315 . + 0 ID=Physo135397;Parent=Physo135397;rank=1 scaffold_38 . exon 124679 125315 . + . ID=Physo135397.1;Parent=Physo135397;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 125468 125984 . + 0 ID=Physo135397;Parent=Physo135397;rank=2 scaffold_38 . exon 125468 125984 . + . ID=Physo135397.2;Parent=Physo135397;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . CDS 126029 126122 . + 0 ID=Physo135397;Parent=Physo135397;rank=3 scaffold_38 . exon 126029 126122 . + . ID=Physo135397.3;Parent=Physo135397;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 ensembl protein_coding_gene 127295 127629 . - . ID=Physo135398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380032;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 127295 127629 . - . ID=Physo135398;Parent=Physo135398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 127295 127540 . - 0 ID=Physo135398;Parent=Physo135398;rank=2 scaffold_38 . exon 127295 127540 . - . ID=Physo135398.2;Parent=Physo135398;constitutive=1;rank=2 scaffold_38 . CDS 127564 127629 . - 0 ID=Physo135398;Parent=Physo135398;rank=1 scaffold_38 . exon 127564 127629 . - . ID=Physo135398.1;Parent=Physo135398;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 121469 123904 . + . ID=Physo157221;biotype=protein_coding;description=Elicitin-like protein SOL9 [Source:UniProtKB/TrEMBL%3BAcc:Q2N050];external_name=C_scaffold_38000010;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 121469 123904 . + . ID=Physo157221;Parent=Physo157221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 121469 121537 . + 0 ID=Physo157221;Parent=Physo157221;rank=1 scaffold_38 . exon 121469 121537 . + . ID=Physo157221.1;Parent=Physo157221;constitutive=1;rank=1 scaffold_38 . CDS 121592 121695 . + 0 ID=Physo157221;Parent=Physo157221;rank=2 scaffold_38 . exon 121592 121695 . + . ID=Physo157221.2;Parent=Physo157221;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 121723 121930 . + 0 ID=Physo157221;Parent=Physo157221;rank=3 scaffold_38 . exon 121723 121930 . + . ID=Physo157221.3;Parent=Physo157221;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 122904 123162 . + 0 ID=Physo157221;Parent=Physo157221;rank=4 scaffold_38 . exon 122904 123162 . + . ID=Physo157221.4;Parent=Physo157221;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 123579 123904 . + 0 ID=Physo157221;Parent=Physo157221;rank=5 scaffold_38 . exon 123579 123904 . + . ID=Physo157221.5;Parent=Physo157221;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . repeat_region 130226 130253 . ? . description=trf scaffold_38 . repeat_region 131380 131416 . ? . description=dust scaffold_38 ensembl protein_coding_gene 131417 133574 . + . ID=Physo108879;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_380003;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 131417 133574 . + . ID=Physo108879;Parent=Physo108879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 131417 133336 . + 0 ID=Physo108879;Parent=Physo108879;rank=1 scaffold_38 . exon 131417 133336 . + . ID=Physo108879.1;Parent=Physo108879;constitutive=1;rank=1 scaffold_38 . CDS 133422 133574 . + 0 ID=Physo108879;Parent=Physo108879;rank=2 scaffold_38 . exon 133422 133574 . + . ID=Physo108879.2;Parent=Physo108879;constitutive=1;rank=2 scaffold_38 ensembl protein_coding_gene 128642 130466 . - . ID=Physo135399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380033;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 128642 130466 . - . ID=Physo135399;Parent=Physo135399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 128642 130399 . - 0 ID=Physo135399;Parent=Physo135399;rank=1 scaffold_38 . exon 128642 130466 . - . ID=Physo135399.1;Parent=Physo135399;constitutive=1;ensembl_phase=-1;rank=1 scaffold_38 ensembl protein_coding_gene 133772 135345 . + . ID=Physo135401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380035;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 133772 135345 . + . ID=Physo135401;Parent=Physo135401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 133772 133838 . + 0 ID=Physo135401;Parent=Physo135401;rank=1 scaffold_38 . exon 133772 133838 . + . ID=Physo135401.1;Parent=Physo135401;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 133881 135238 . + 0 ID=Physo135401;Parent=Physo135401;rank=2 scaffold_38 . exon 133881 135345 . + . ID=Physo135401.2;Parent=Physo135401;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_38 ensembl protein_coding_gene 135460 136624 . - . ID=Physo135402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380036;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 135460 136624 . - . ID=Physo135402;Parent=Physo135402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 135460 135603 . - 0 ID=Physo135402;Parent=Physo135402;rank=4 scaffold_38 . exon 135460 135603 . - . ID=Physo135402.4;Parent=Physo135402;constitutive=1;rank=4 scaffold_38 . CDS 135676 136361 . - 0 ID=Physo135402;Parent=Physo135402;rank=3 scaffold_38 . exon 135676 136361 . - . ID=Physo135402.3;Parent=Physo135402;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 136431 136527 . - 0 ID=Physo135402;Parent=Physo135402;rank=2 scaffold_38 . exon 136431 136527 . - . ID=Physo135402.2;Parent=Physo135402;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 136598 136624 . - 0 ID=Physo135402;Parent=Physo135402;rank=1 scaffold_38 . exon 136598 136624 . - . ID=Physo135402.1;Parent=Physo135402;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 136972 138204 . - . ID=Physo135403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380037;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 136972 138204 . - . ID=Physo135403;Parent=Physo135403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 136972 138204 . - 0 ID=Physo135403;Parent=Physo135403;rank=1 scaffold_38 . exon 136972 138204 . - . ID=Physo135403.1;Parent=Physo135403;constitutive=1;rank=1 scaffold_38 . biological_region 137839 137843 0.999 + . logic_name=eponine scaffold_38 . biological_region 137885 137887 0.999 - . logic_name=eponine scaffold_38 . biological_region 137940 137944 0.999 + . logic_name=eponine scaffold_38 . biological_region 138397 138400 0.999 + . logic_name=eponine scaffold_38 . biological_region 140777 140779 0.999 - . logic_name=eponine scaffold_38 . biological_region 141634 141639 0.999 - . logic_name=eponine scaffold_38 . biological_region 142598 142598 0.999 - . logic_name=eponine scaffold_38 . biological_region 142621 142623 0.999 - . logic_name=eponine scaffold_38 . biological_region 142701 142704 0.999 - . logic_name=eponine scaffold_38 . biological_region 142708 142711 0.999 + . logic_name=eponine scaffold_38 . biological_region 142732 142733 0.999 + . logic_name=eponine scaffold_38 . biological_region 144254 144258 0.999 + . logic_name=eponine scaffold_38 . biological_region 144267 144268 0.999 + . logic_name=eponine scaffold_38 . biological_region 144387 144388 0.999 - . logic_name=eponine scaffold_38 . biological_region 145087 145089 0.999 + . logic_name=eponine scaffold_38 ensembl protein_coding_gene 138738 140286 . + . ID=Physo135404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380038;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 138738 140286 . + . ID=Physo135404;Parent=Physo135404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 138738 138806 . + 0 ID=Physo135404;Parent=Physo135404;rank=1 scaffold_38 . exon 138738 138806 . + . ID=Physo135404.1;Parent=Physo135404;constitutive=1;rank=1 scaffold_38 . CDS 138880 140286 . + 0 ID=Physo135404;Parent=Physo135404;rank=2 scaffold_38 . exon 138880 140286 . + . ID=Physo135404.2;Parent=Physo135404;constitutive=1;rank=2 scaffold_38 ensembl protein_coding_gene 146257 147146 . - . ID=Physo135408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380042;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 146257 147146 . - . ID=Physo135408;Parent=Physo135408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 146257 146726 . - 0 ID=Physo135408;Parent=Physo135408;rank=3 scaffold_38 . exon 146257 146726 . - . ID=Physo135408.3;Parent=Physo135408;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 146815 146887 . - 0 ID=Physo135408;Parent=Physo135408;rank=2 scaffold_38 . exon 146815 146887 . - . ID=Physo135408.2;Parent=Physo135408;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 146979 147146 . - 0 ID=Physo135408;Parent=Physo135408;rank=1 scaffold_38 . exon 146979 147146 . - . ID=Physo135408.1;Parent=Physo135408;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 147409 149172 . + . ID=Physo135409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380043;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 147409 149172 . + . ID=Physo135409;Parent=Physo135409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 147409 147567 . + 0 ID=Physo135409;Parent=Physo135409;rank=1 scaffold_38 . exon 147409 147567 . + . ID=Physo135409.1;Parent=Physo135409;constitutive=1;rank=1 scaffold_38 . CDS 147651 147715 . + 0 ID=Physo135409;Parent=Physo135409;rank=2 scaffold_38 . CDS 147827 147990 . + 0 ID=Physo135409;Parent=Physo135409;rank=3 scaffold_38 . CDS 148082 148914 . + 0 ID=Physo135409;Parent=Physo135409;rank=4 scaffold_38 . CDS 148990 149172 . + 0 ID=Physo135409;Parent=Physo135409;rank=5 scaffold_38 ensembl protein_coding_gene 140553 140885 . - . ID=Physo157223;biotype=protein_coding;external_name=C_scaffold_38000012;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 140553 140885 . - . ID=Physo157223;Parent=Physo157223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 140553 140885 . - 0 ID=Physo157223;Parent=Physo157223;rank=1 scaffold_38 . exon 140553 140885 . - . ID=Physo157223.1;Parent=Physo157223;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 142252 145831 . - . ID=Physo157224;biotype=protein_coding;external_name=C_scaffold_38000013;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 142252 145831 . - . ID=Physo157224;Parent=Physo157224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 142252 142848 . - 0 ID=Physo157224;Parent=Physo157224;rank=11 scaffold_38 . exon 142252 142848 . - . ID=Physo157224.11;Parent=Physo157224;constitutive=1;rank=11 scaffold_38 . CDS 142956 143055 . - 0 ID=Physo157224;Parent=Physo157224;rank=10 scaffold_38 . exon 142956 143055 . - . ID=Physo157224.10;Parent=Physo157224;constitutive=1;ensembl_phase=2;rank=10 scaffold_38 . CDS 143124 143715 . - 0 ID=Physo157224;Parent=Physo157224;rank=9 scaffold_38 . exon 143124 143715 . - . ID=Physo157224.9;Parent=Physo157224;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_38 . CDS 143801 143893 . - 0 ID=Physo157224;Parent=Physo157224;rank=8 scaffold_38 . exon 143801 143893 . - . ID=Physo157224.8;Parent=Physo157224;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_38 . CDS 143981 144444 . - 0 ID=Physo157224;Parent=Physo157224;rank=7 scaffold_38 . exon 143981 144444 . - . ID=Physo157224.7;Parent=Physo157224;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_38 . CDS 144696 144923 . - 0 ID=Physo157224;Parent=Physo157224;rank=6 scaffold_38 . exon 144696 144923 . - . ID=Physo157224.6;Parent=Physo157224;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_38 . CDS 144972 145185 . - 0 ID=Physo157224;Parent=Physo157224;rank=5 scaffold_38 . exon 144972 145185 . - . ID=Physo157224.5;Parent=Physo157224;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_38 . CDS 145216 145296 . - 0 ID=Physo157224;Parent=Physo157224;rank=4 scaffold_38 . exon 145216 145296 . - . ID=Physo157224.4;Parent=Physo157224;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 145345 145415 . - 0 ID=Physo157224;Parent=Physo157224;rank=3 scaffold_38 . exon 145345 145415 . - . ID=Physo157224.3;Parent=Physo157224;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 145464 145622 . - 0 ID=Physo157224;Parent=Physo157224;rank=2 scaffold_38 . exon 145464 145622 . - . ID=Physo157224.2;Parent=Physo157224;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 145710 145831 . - 0 ID=Physo157224;Parent=Physo157224;rank=1 scaffold_38 . exon 145710 145831 . - . ID=Physo157224.1;Parent=Physo157224;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . repeat_region 156557 156567 . ? . description=dust scaffold_38 . exon 147651 147715 . + . ID=Physo135409.2;Parent=Physo135409;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . exon 147827 147990 . + . ID=Physo135409.3;Parent=Physo135409;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_38 . exon 148082 148914 . + . ID=Physo135409.4;Parent=Physo135409;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . exon 148990 149172 . + . ID=Physo135409.5;Parent=Physo135409;constitutive=1;rank=5 scaffold_38 ensembl protein_coding_gene 149476 153221 . - . ID=Physo157226;biotype=protein_coding;external_name=C_scaffold_38000015;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 149476 153221 . - . ID=Physo157226;Parent=Physo157226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 149476 149513 . - 0 ID=Physo157226;Parent=Physo157226;rank=9 scaffold_38 . exon 149476 149513 . - . ID=Physo157226.9;Parent=Physo157226;constitutive=1;ensembl_phase=1;rank=9 scaffold_38 . CDS 149606 149887 . - 0 ID=Physo157226;Parent=Physo157226;rank=8 scaffold_38 . exon 149606 149887 . - . ID=Physo157226.8;Parent=Physo157226;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_38 . CDS 149962 150031 . - 0 ID=Physo157226;Parent=Physo157226;rank=7 scaffold_38 . exon 149962 150031 . - . ID=Physo157226.7;Parent=Physo157226;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_38 . CDS 150143 151299 . - 0 ID=Physo157226;Parent=Physo157226;rank=6 scaffold_38 . exon 150143 151299 . - . ID=Physo157226.6;Parent=Physo157226;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 151506 151787 . - 0 ID=Physo157226;Parent=Physo157226;rank=5 scaffold_38 . exon 151506 151787 . - . ID=Physo157226.5;Parent=Physo157226;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 151854 151923 . - 0 ID=Physo157226;Parent=Physo157226;rank=4 scaffold_38 . exon 151854 151923 . - . ID=Physo157226.4;Parent=Physo157226;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 152370 152663 . - 0 ID=Physo157226;Parent=Physo157226;rank=3 scaffold_38 . exon 152370 152663 . - . ID=Physo157226.3;Parent=Physo157226;constitutive=1;rank=3 scaffold_38 . CDS 152694 152908 . - 0 ID=Physo157226;Parent=Physo157226;rank=2 scaffold_38 . exon 152694 152908 . - . ID=Physo157226.2;Parent=Physo157226;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 153005 153221 . - 0 ID=Physo157226;Parent=Physo157226;rank=1 scaffold_38 . exon 153005 153221 . - . ID=Physo157226.1;Parent=Physo157226;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 153753 154346 . + . ID=Physo157227;biotype=protein_coding;external_name=C_scaffold_38000016;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 153753 154346 . + . ID=Physo157227;Parent=Physo157227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 153753 153893 . + 0 ID=Physo157227;Parent=Physo157227;rank=1 scaffold_38 . exon 153753 153893 . + . ID=Physo157227.1;Parent=Physo157227;constitutive=1;rank=1 scaffold_38 . CDS 153921 154346 . + 0 ID=Physo157227;Parent=Physo157227;rank=2 scaffold_38 . exon 153921 154346 . + . ID=Physo157227.2;Parent=Physo157227;constitutive=1;rank=2 scaffold_38 . biological_region 166793 166793 0.999 - . logic_name=eponine scaffold_38 . biological_region 166940 166945 0.999 + . logic_name=eponine scaffold_38 ensembl protein_coding_gene 163027 163551 . - . ID=Physo135411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380045;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 163027 163551 . - . ID=Physo135411;Parent=Physo135411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 163027 163551 . - 0 ID=Physo135411;Parent=Physo135411;rank=1 scaffold_38 . exon 163027 163551 . - . ID=Physo135411.1;Parent=Physo135411;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 164239 167454 . - . ID=Physo135412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380046;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 164239 167454 . - . ID=Physo135412;Parent=Physo135412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 164239 167454 . - 0 ID=Physo135412;Parent=Physo135412;rank=1 scaffold_38 . exon 164239 167454 . - . ID=Physo135412.1;Parent=Physo135412;constitutive=1;rank=1 scaffold_38 . repeat_region 167642 167671 . ? . description=dust scaffold_38 . repeat_region 175716 175736 . ? . description=dust scaffold_38 ensembl protein_coding_gene 175996 176788 . - . ID=Physo108880;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_380004;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 175996 176788 . - . ID=Physo108880;Parent=Physo108880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 175996 176784 . - 0 ID=Physo108880;Parent=Physo108880;rank=1 scaffold_38 . exon 175996 176788 . - . ID=Physo108880.1;Parent=Physo108880;constitutive=1;ensembl_phase=-1;rank=1 scaffold_38 ensembl protein_coding_gene 167886 168746 . - . ID=Physo135413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380047;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 167886 168746 . - . ID=Physo135413;Parent=Physo135413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 167886 168746 . - 0 ID=Physo135413;Parent=Physo135413;rank=1 scaffold_38 . exon 167886 168746 . - . ID=Physo135413.1;Parent=Physo135413;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 169439 170047 . - . ID=Physo135414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380048;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 169439 170047 . - . ID=Physo135414;Parent=Physo135414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 169439 169826 . - 0 ID=Physo135414;Parent=Physo135414;rank=2 scaffold_38 . exon 169439 169826 . - . ID=Physo135414.2;Parent=Physo135414;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 169869 170047 . - 0 ID=Physo135414;Parent=Physo135414;rank=1 scaffold_38 . exon 169869 170047 . - . ID=Physo135414.1;Parent=Physo135414;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 171231 173012 . + . ID=Physo135415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380049;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 171231 173012 . + . ID=Physo135415;Parent=Physo135415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 171231 173012 . + 0 ID=Physo135415;Parent=Physo135415;rank=1 scaffold_38 . exon 171231 173012 . + . ID=Physo135415.1;Parent=Physo135415;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 173926 175617 . + . ID=Physo135416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380050;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 173926 175617 . + . ID=Physo135416;Parent=Physo135416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 173926 175617 . + 0 ID=Physo135416;Parent=Physo135416;rank=1 scaffold_38 . exon 173926 175617 . + . ID=Physo135416.1;Parent=Physo135416;constitutive=1;rank=1 scaffold_38 . repeat_region 180771 180836 . + . description=(CAT)n scaffold_38 . repeat_region 183696 183944 . ? . description=trf scaffold_38 . biological_region 185037 185038 0.999 + . logic_name=eponine scaffold_38 . biological_region 185105 185110 0.999 + . logic_name=eponine scaffold_38 . biological_region 185185 185189 0.999 + . logic_name=eponine scaffold_38 . biological_region 185210 185217 0.999 - . logic_name=eponine scaffold_38 . biological_region 185384 185391 0.999 - . logic_name=eponine scaffold_38 . repeat_region 186525 186556 . ? . description=trf scaffold_38 ensembl protein_coding_gene 184059 185316 . - . ID=Physo135418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380052;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 184059 185316 . - . ID=Physo135418;Parent=Physo135418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 184059 184075 . - 0 ID=Physo135418;Parent=Physo135418;rank=2 scaffold_38 . exon 184059 184075 . - . ID=Physo135418.2;Parent=Physo135418;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 184326 185316 . - 0 ID=Physo135418;Parent=Physo135418;rank=1 scaffold_38 . exon 184326 185316 . - . ID=Physo135418.1;Parent=Physo135418;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 186439 191105 . + . ID=Physo135419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380053;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 186439 191105 . + . ID=Physo135419;Parent=Physo135419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 186439 187605 . + 0 ID=Physo135419;Parent=Physo135419;rank=1 scaffold_38 . exon 186439 187605 . + . ID=Physo135419.1;Parent=Physo135419;constitutive=1;rank=1 scaffold_38 . CDS 187946 188020 . + 0 ID=Physo135419;Parent=Physo135419;rank=2 scaffold_38 . CDS 188087 188333 . + 0 ID=Physo135419;Parent=Physo135419;rank=3 scaffold_38 . CDS 188414 188928 . + 0 ID=Physo135419;Parent=Physo135419;rank=4 scaffold_38 . CDS 189015 189283 . + 0 ID=Physo135419;Parent=Physo135419;rank=5 scaffold_38 . CDS 189332 190059 . + 0 ID=Physo135419;Parent=Physo135419;rank=6 scaffold_38 . CDS 190261 190874 . + 0 ID=Physo135419;Parent=Physo135419;rank=7 scaffold_38 . repeat_region 191158 191168 . ? . description=dust scaffold_38 . repeat_region 192815 192827 . ? . description=dust scaffold_38 . repeat_region 195166 195174 . ? . description=dust scaffold_38 . repeat_region 195649 195656 . ? . description=dust scaffold_38 . exon 187946 188020 . + . ID=Physo135419.2;Parent=Physo135419;constitutive=1;rank=2 scaffold_38 . exon 188087 188333 . + . ID=Physo135419.3;Parent=Physo135419;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . exon 188414 188928 . + . ID=Physo135419.4;Parent=Physo135419;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . exon 189015 189283 . + . ID=Physo135419.5;Parent=Physo135419;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_38 . exon 189332 190059 . + . ID=Physo135419.6;Parent=Physo135419;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_38 . exon 190261 191105 . + . ID=Physo135419.7;Parent=Physo135419;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_38 ensembl protein_coding_gene 193223 194850 . + . ID=Physo135420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380054;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 193223 194850 . + . ID=Physo135420;Parent=Physo135420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 193223 193268 . + 0 ID=Physo135420;Parent=Physo135420;rank=1 scaffold_38 . exon 193223 193268 . + . ID=Physo135420.1;Parent=Physo135420;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 193411 193945 . + 0 ID=Physo135420;Parent=Physo135420;rank=2 scaffold_38 . exon 193411 193945 . + . ID=Physo135420.2;Parent=Physo135420;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . CDS 194050 194758 . + 0 ID=Physo135420;Parent=Physo135420;rank=3 scaffold_38 . exon 194050 194758 . + . ID=Physo135420.3;Parent=Physo135420;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 194803 194850 . + 0 ID=Physo135420;Parent=Physo135420;rank=4 scaffold_38 . exon 194803 194850 . + . ID=Physo135420.4;Parent=Physo135420;constitutive=1;rank=4 scaffold_38 ensembl protein_coding_gene 202160 203881 . - . ID=Physo135421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380055;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 202160 203881 . - . ID=Physo135421;Parent=Physo135421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 202160 202386 . - 0 ID=Physo135421;Parent=Physo135421;rank=4 scaffold_38 . exon 202160 202386 . - . ID=Physo135421.4;Parent=Physo135421;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 202425 202833 . - 0 ID=Physo135421;Parent=Physo135421;rank=3 scaffold_38 . exon 202425 202833 . - . ID=Physo135421.3;Parent=Physo135421;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_38 . CDS 203097 203714 . - 0 ID=Physo135421;Parent=Physo135421;rank=2 scaffold_38 . exon 203097 203714 . - . ID=Physo135421.2;Parent=Physo135421;constitutive=1;rank=2 scaffold_38 . CDS 203813 203881 . - 0 ID=Physo135421;Parent=Physo135421;rank=1 scaffold_38 . exon 203813 203881 . - . ID=Physo135421.1;Parent=Physo135421;constitutive=1;rank=1 scaffold_38 . biological_region 206633 206634 0.999 + . logic_name=eponine scaffold_38 . repeat_region 207216 207245 . ? . description=trf scaffold_38 . repeat_region 207216 207273 . ? . description=dust scaffold_38 . repeat_region 207221 207245 . ? . description=trf scaffold_38 . biological_region 209375 209379 0.999 + . logic_name=eponine scaffold_38 . repeat_region 213786 213822 . ? . description=trf scaffold_38 ensembl protein_coding_gene 208727 210285 . + . ID=Physo135422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380056;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 208727 210285 . + . ID=Physo135422;Parent=Physo135422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 208727 208756 . + 0 ID=Physo135422;Parent=Physo135422;rank=1 scaffold_38 . exon 208727 208756 . + . ID=Physo135422.1;Parent=Physo135422;constitutive=1;rank=1 scaffold_38 . CDS 208832 209313 . + 0 ID=Physo135422;Parent=Physo135422;rank=2 scaffold_38 . exon 208832 209313 . + . ID=Physo135422.2;Parent=Physo135422;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 209351 209669 . + 0 ID=Physo135422;Parent=Physo135422;rank=3 scaffold_38 . exon 209351 209669 . + . ID=Physo135422.3;Parent=Physo135422;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 209731 210285 . + 0 ID=Physo135422;Parent=Physo135422;rank=4 scaffold_38 . exon 209731 210285 . + . ID=Physo135422.4;Parent=Physo135422;constitutive=1;rank=4 scaffold_38 ensembl protein_coding_gene 212575 214557 . + . ID=Physo135423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380057;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 212575 214557 . + . ID=Physo135423;Parent=Physo135423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 212575 214557 . + 0 ID=Physo135423;Parent=Physo135423;rank=1 scaffold_38 . exon 212575 214557 . + . ID=Physo135423.1;Parent=Physo135423;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 214939 216883 . + . ID=Physo135424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380058;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 214939 216883 . + . ID=Physo135424;Parent=Physo135424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 214939 216883 . + . ID=Physo135424.1;Parent=Physo135424;constitutive=1;ensembl_phase=-1;rank=1 scaffold_38 . CDS 214958 216883 . + 0 ID=Physo135424;Parent=Physo135424;rank=1 scaffold_38 ensembl protein_coding_gene 217315 218094 . - . ID=Physo135425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380059;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 217315 218094 . - . ID=Physo135425;Parent=Physo135425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 217315 217691 . - 0 ID=Physo135425;Parent=Physo135425;rank=3 scaffold_38 . exon 217315 217691 . - . ID=Physo135425.3;Parent=Physo135425;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 217789 217895 . - 0 ID=Physo135425;Parent=Physo135425;rank=2 scaffold_38 . exon 217789 217895 . - . ID=Physo135425.2;Parent=Physo135425;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 218024 218094 . - 0 ID=Physo135425;Parent=Physo135425;rank=1 scaffold_38 . exon 218024 218094 . - . ID=Physo135425.1;Parent=Physo135425;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 219296 220324 . - . ID=Physo135426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380060;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 219296 220324 . - . ID=Physo135426;Parent=Physo135426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 219296 220324 . - 0 ID=Physo135426;Parent=Physo135426;rank=1 scaffold_38 . exon 219296 220324 . - . ID=Physo135426.1;Parent=Physo135426;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 221689 223095 . + . ID=Physo135427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380061;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 221689 223095 . + . ID=Physo135427;Parent=Physo135427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 221689 223095 . + 0 ID=Physo135427;Parent=Physo135427;rank=1 scaffold_38 . exon 221689 223095 . + . ID=Physo135427.1;Parent=Physo135427;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 223257 228194 . + . ID=Physo135428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380062;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 223257 228194 . + . ID=Physo135428;Parent=Physo135428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 223257 228194 . + 0 ID=Physo135428;Parent=Physo135428;rank=1 scaffold_38 . exon 223257 228194 . + . ID=Physo135428.1;Parent=Physo135428;constitutive=1;rank=1 scaffold_38 . repeat_region 229606 229614 . ? . description=dust scaffold_38 . biological_region 230452 230456 0.999 - . logic_name=eponine scaffold_38 . biological_region 230477 230479 0.999 - . logic_name=eponine scaffold_38 . biological_region 230530 230531 0.999 + . logic_name=eponine scaffold_38 . biological_region 230533 230533 0.999 - . logic_name=eponine scaffold_38 . biological_region 230931 230936 0.999 - . logic_name=eponine scaffold_38 . biological_region 230963 230967 0.999 - . logic_name=eponine scaffold_38 . repeat_region 232541 232584 . ? . description=dust scaffold_38 . repeat_region 232545 232588 . ? . description=trf scaffold_38 ensembl protein_coding_gene 228311 229940 . - . ID=Physo135429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380063;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 228311 229940 . - . ID=Physo135429;Parent=Physo135429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 228311 228690 . - 0 ID=Physo135429;Parent=Physo135429;rank=7 scaffold_38 . exon 228311 228690 . - . ID=Physo135429.7;Parent=Physo135429;constitutive=1;ensembl_phase=1;rank=7 scaffold_38 . CDS 228992 229143 . - 0 ID=Physo135429;Parent=Physo135429;rank=6 scaffold_38 . exon 228992 229143 . - . ID=Physo135429.6;Parent=Physo135429;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_38 . CDS 229222 229306 . - 0 ID=Physo135429;Parent=Physo135429;rank=5 scaffold_38 . exon 229222 229306 . - . ID=Physo135429.5;Parent=Physo135429;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_38 . CDS 229375 229426 . - 0 ID=Physo135429;Parent=Physo135429;rank=4 scaffold_38 . exon 229375 229426 . - . ID=Physo135429.4;Parent=Physo135429;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_38 . CDS 229487 229569 . - 0 ID=Physo135429;Parent=Physo135429;rank=3 scaffold_38 . exon 229487 229569 . - . ID=Physo135429.3;Parent=Physo135429;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 229639 229786 . - 0 ID=Physo135429;Parent=Physo135429;rank=2 scaffold_38 . exon 229639 229786 . - . ID=Physo135429.2;Parent=Physo135429;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 229881 229940 . - 0 ID=Physo135429;Parent=Physo135429;rank=1 scaffold_38 . exon 229881 229940 . - . ID=Physo135429.1;Parent=Physo135429;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 230159 231426 . + . ID=Physo135430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380064;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 230159 231426 . + . ID=Physo135430;Parent=Physo135430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 230159 230188 . + 0 ID=Physo135430;Parent=Physo135430;rank=1 scaffold_38 . exon 230159 230188 . + . ID=Physo135430.1;Parent=Physo135430;constitutive=1;rank=1 scaffold_38 . CDS 230243 230716 . + 0 ID=Physo135430;Parent=Physo135430;rank=2 scaffold_38 . exon 230243 230716 . + . ID=Physo135430.2;Parent=Physo135430;constitutive=1;rank=2 scaffold_38 . CDS 230809 231426 . + 0 ID=Physo135430;Parent=Physo135430;rank=3 scaffold_38 . exon 230809 231426 . + . ID=Physo135430.3;Parent=Physo135430;constitutive=1;rank=3 scaffold_38 ensembl protein_coding_gene 235922 237671 . + . ID=Physo135432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380066;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 235922 237671 . + . ID=Physo135432;Parent=Physo135432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 235922 236624 . + 0 ID=Physo135432;Parent=Physo135432;rank=1 scaffold_38 . exon 235922 236624 . + . ID=Physo135432.1;Parent=Physo135432;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 236694 236769 . + 0 ID=Physo135432;Parent=Physo135432;rank=2 scaffold_38 . CDS 236843 237671 . + 0 ID=Physo135432;Parent=Physo135432;rank=3 scaffold_38 ensembl protein_coding_gene 231680 234256 . - . ID=Physo157230;biotype=protein_coding;external_name=C_scaffold_38000019;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 231680 234256 . - . ID=Physo157230;Parent=Physo157230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 231680 231799 . - 0 ID=Physo157230;Parent=Physo157230;rank=5 scaffold_38 . exon 231680 231799 . - . ID=Physo157230.5;Parent=Physo157230;constitutive=1;rank=5 scaffold_38 . CDS 231881 232087 . - 0 ID=Physo157230;Parent=Physo157230;rank=4 scaffold_38 . exon 231881 232087 . - . ID=Physo157230.4;Parent=Physo157230;constitutive=1;rank=4 scaffold_38 . CDS 232446 232635 . - 0 ID=Physo157230;Parent=Physo157230;rank=3 scaffold_38 . exon 232446 232635 . - . ID=Physo157230.3;Parent=Physo157230;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 232665 233387 . - 0 ID=Physo157230;Parent=Physo157230;rank=2 scaffold_38 . exon 232665 233387 . - . ID=Physo157230.2;Parent=Physo157230;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 233469 234256 . - 0 ID=Physo157230;Parent=Physo157230;rank=1 scaffold_38 . exon 233469 234256 . - . ID=Physo157230.1;Parent=Physo157230;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . repeat_region 244689 248951 . - . description=Polinton-1_PI scaffold_38 ensembl protein_coding_gene 237861 241310 . - . ID=Physo108881;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_380005;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 237861 241310 . - . ID=Physo108881;Parent=Physo108881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 237861 241310 . - 0 ID=Physo108881;Parent=Physo108881;rank=1 scaffold_38 . exon 237861 241310 . - . ID=Physo108881.1;Parent=Physo108881;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 241616 243040 . + . ID=Physo108882;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_380006;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 241616 243040 . + . ID=Physo108882;Parent=Physo108882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 241616 243040 . + 0 ID=Physo108882;Parent=Physo108882;rank=1 scaffold_38 . exon 241616 243040 . + . ID=Physo108882.1;Parent=Physo108882;constitutive=1;rank=1 scaffold_38 . exon 236694 236769 . + . ID=Physo135432.2;Parent=Physo135432;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . exon 236843 237671 . + . ID=Physo135432.3;Parent=Physo135432;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 ensembl protein_coding_gene 243156 243629 . - . ID=Physo135435;biotype=protein_coding;description=Elicitin-like protein SOL4B [Source:UniProtKB/TrEMBL%3BAcc:Q2N054];external_name=estExt_fgenesh1_pg.C_380069;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 243156 243629 . - . ID=Physo135435;Parent=Physo135435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 243156 243629 . - 0 ID=Physo135435;Parent=Physo135435;rank=1 scaffold_38 . exon 243156 243629 . - . ID=Physo135435.1;Parent=Physo135435;constitutive=1;rank=1 scaffold_38 . repeat_region 248232 248239 . ? . description=dust scaffold_38 . repeat_region 251934 252687 . ? . description=dust scaffold_38 . repeat_region 253555 258338 . - . description=Polinton-1_PI scaffold_38 . repeat_region 259343 259541 . - . description=Polinton-1_PI scaffold_38 . repeat_region 259556 259991 . - . description=Polinton-1_PI scaffold_38 . biological_region 262092 262095 0.999 + . logic_name=eponine scaffold_38 . biological_region 262201 262202 0.999 - . logic_name=eponine scaffold_38 . biological_region 262653 262655 0.999 + . logic_name=eponine scaffold_38 . biological_region 263988 263988 0.999 + . logic_name=eponine scaffold_38 . biological_region 264008 264016 0.999 + . logic_name=eponine scaffold_38 . biological_region 264074 264084 0.999 - . logic_name=eponine scaffold_38 . biological_region 264115 264117 0.999 - . logic_name=eponine scaffold_38 . biological_region 264131 264135 0.999 + . logic_name=eponine scaffold_38 . biological_region 264169 264179 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 258328 259721 . - . ID=Physo108883;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_380007;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 258328 259721 . - . ID=Physo108883;Parent=Physo108883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 258328 259099 . - . ID=Physo108883.3;Parent=Physo108883;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_38 . CDS 258375 259099 . - 0 ID=Physo108883;Parent=Physo108883;rank=3 scaffold_38 . CDS 259122 259164 . - 0 ID=Physo108883;Parent=Physo108883;rank=2 scaffold_38 . exon 259122 259164 . - . ID=Physo108883.2;Parent=Physo108883;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_38 . CDS 259184 259711 . - 0 ID=Physo108883;Parent=Physo108883;rank=1 scaffold_38 . exon 259184 259721 . - . ID=Physo108883.1;Parent=Physo108883;constitutive=1;ensembl_phase=-1;rank=1 scaffold_38 ensembl protein_coding_gene 260163 262866 . - . ID=Physo135437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380071;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 260163 262866 . - . ID=Physo135437;Parent=Physo135437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 260163 260591 . - 0 ID=Physo135437;Parent=Physo135437;rank=5 scaffold_38 . exon 260163 260591 . - . ID=Physo135437.5;Parent=Physo135437;constitutive=1;rank=5 scaffold_38 . CDS 260652 261156 . - 0 ID=Physo135437;Parent=Physo135437;rank=4 scaffold_38 . exon 260652 261156 . - . ID=Physo135437.4;Parent=Physo135437;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 261502 261716 . - 0 ID=Physo135437;Parent=Physo135437;rank=3 scaffold_38 . exon 261502 261716 . - . ID=Physo135437.3;Parent=Physo135437;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_38 . CDS 261949 262330 . - 0 ID=Physo135437;Parent=Physo135437;rank=2 scaffold_38 . exon 261949 262330 . - . ID=Physo135437.2;Parent=Physo135437;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 262409 262866 . - 0 ID=Physo135437;Parent=Physo135437;rank=1 scaffold_38 . exon 262409 262866 . - . ID=Physo135437.1;Parent=Physo135437;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 263973 265958 . + . ID=Physo135439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380073;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 263973 265958 . + . ID=Physo135439;Parent=Physo135439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 263973 264280 . + 0 ID=Physo135439;Parent=Physo135439;rank=1 scaffold_38 . exon 263973 264280 . + . ID=Physo135439.1;Parent=Physo135439;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 264362 264414 . + 0 ID=Physo135439;Parent=Physo135439;rank=2 scaffold_38 . exon 264362 264414 . + . ID=Physo135439.2;Parent=Physo135439;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 264497 264778 . + 0 ID=Physo135439;Parent=Physo135439;rank=3 scaffold_38 . exon 264497 264778 . + . ID=Physo135439.3;Parent=Physo135439;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 264850 265958 . + 0 ID=Physo135439;Parent=Physo135439;rank=4 scaffold_38 . exon 264850 265958 . + . ID=Physo135439.4;Parent=Physo135439;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 ensembl protein_coding_gene 263003 263374 . - . ID=Physo157233;biotype=protein_coding;external_name=C_scaffold_38000022;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 263003 263374 . - . ID=Physo157233;Parent=Physo157233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 263003 263374 . - 0 ID=Physo157233;Parent=Physo157233;rank=1 scaffold_38 . exon 263003 263374 . - . ID=Physo157233.1;Parent=Physo157233;constitutive=1;rank=1 scaffold_38 . repeat_region 266339 266366 . ? . description=trf scaffold_38 . repeat_region 266389 266420 . ? . description=trf scaffold_38 . repeat_region 267053 267061 . ? . description=dust scaffold_38 . repeat_region 271095 271163 . ? . description=trf scaffold_38 ensembl protein_coding_gene 266053 266712 . - . ID=Physo135440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380074;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 266053 266712 . - . ID=Physo135440;Parent=Physo135440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 266053 266712 . - 0 ID=Physo135440;Parent=Physo135440;rank=1 scaffold_38 . exon 266053 266712 . - . ID=Physo135440.1;Parent=Physo135440;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 267835 268695 . + . ID=Physo135441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380075;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 267835 268695 . + . ID=Physo135441;Parent=Physo135441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 267835 268695 . + 0 ID=Physo135441;Parent=Physo135441;rank=1 scaffold_38 . exon 267835 268695 . + . ID=Physo135441.1;Parent=Physo135441;constitutive=1;rank=1 scaffold_38 . biological_region 282752 282754 0.999 + . logic_name=eponine scaffold_38 . biological_region 282989 282995 0.999 + . logic_name=eponine scaffold_38 . biological_region 283016 283021 0.999 + . logic_name=eponine scaffold_38 . biological_region 283074 283080 0.999 + . logic_name=eponine scaffold_38 ensembl protein_coding_gene 277438 278891 . - . ID=Physo135442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380076;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 277438 278891 . - . ID=Physo135442;Parent=Physo135442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 277438 277969 . - 0 ID=Physo135442;Parent=Physo135442;rank=3 scaffold_38 . exon 277438 277969 . - . ID=Physo135442.3;Parent=Physo135442;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 278021 278113 . - 0 ID=Physo135442;Parent=Physo135442;rank=2 scaffold_38 . exon 278021 278113 . - . ID=Physo135442.2;Parent=Physo135442;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 278179 278891 . - 0 ID=Physo135442;Parent=Physo135442;rank=1 scaffold_38 . exon 278179 278891 . - . ID=Physo135442.1;Parent=Physo135442;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 282724 287907 . + . ID=Physo135443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380077;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 282724 287907 . + . ID=Physo135443;Parent=Physo135443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 282724 287907 . + 0 ID=Physo135443;Parent=Physo135443;rank=1 scaffold_38 . exon 282724 287907 . + . ID=Physo135443.1;Parent=Physo135443;constitutive=1;rank=1 scaffold_38 . repeat_region 288523 288565 . ? . description=trf scaffold_38 . repeat_region 291805 291822 . ? . description=dust scaffold_38 . repeat_region 294060 294068 . ? . description=dust scaffold_38 . repeat_region 294872 294882 . ? . description=dust scaffold_38 ensembl protein_coding_gene 288050 289744 . + . ID=Physo135444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380078;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 288050 289744 . + . ID=Physo135444;Parent=Physo135444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 288050 289744 . + . ID=Physo135444.1;Parent=Physo135444;constitutive=1;ensembl_phase=-1;rank=1 scaffold_38 . CDS 288110 289744 . + 0 ID=Physo135444;Parent=Physo135444;rank=1 scaffold_38 ensembl protein_coding_gene 290836 291276 . - . ID=Physo135445;biotype=protein_coding;description=PsAvh131 [Source:UniProtKB/TrEMBL%3BAcc:E0W539];external_name=estExt_fgenesh1_pg.C_380079;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 290836 291276 . - . ID=Physo135445;Parent=Physo135445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 290836 291276 . - 0 ID=Physo135445;Parent=Physo135445;rank=1 scaffold_38 . exon 290836 291276 . - . ID=Physo135445.1;Parent=Physo135445;constitutive=1;rank=1 scaffold_38 . biological_region 297910 297910 0.999 + . logic_name=eponine scaffold_38 . biological_region 297915 297919 0.999 + . logic_name=eponine scaffold_38 . biological_region 297961 297964 0.999 - . logic_name=eponine scaffold_38 . biological_region 299211 299213 0.999 - . logic_name=eponine scaffold_38 . biological_region 304279 304284 0.999 + . logic_name=eponine scaffold_38 . biological_region 304721 304722 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 297796 298530 . + . ID=Physo135446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380080;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 297796 298530 . + . ID=Physo135446;Parent=Physo135446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 297796 298530 . + 0 ID=Physo135446;Parent=Physo135446;rank=1 scaffold_38 . exon 297796 298530 . + . ID=Physo135446.1;Parent=Physo135446;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 298592 299766 . - . ID=Physo135447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380081;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 298592 299766 . - . ID=Physo135447;Parent=Physo135447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 298592 299469 . - 0 ID=Physo135447;Parent=Physo135447;rank=3 scaffold_38 . exon 298592 299469 . - . ID=Physo135447.3;Parent=Physo135447;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 299581 299628 . - 0 ID=Physo135447;Parent=Physo135447;rank=2 scaffold_38 . exon 299581 299628 . - . ID=Physo135447.2;Parent=Physo135447;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 299757 299766 . - 0 ID=Physo135447;Parent=Physo135447;rank=1 scaffold_38 . exon 299757 299766 . - . ID=Physo135447.1;Parent=Physo135447;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 303554 304636 . - . ID=Physo135449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380083;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 303554 304636 . - . ID=Physo135449;Parent=Physo135449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 303554 304460 . - 0 ID=Physo135449;Parent=Physo135449;rank=2 scaffold_38 . exon 303554 304460 . - . ID=Physo135449.2;Parent=Physo135449;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 304533 304636 . - 0 ID=Physo135449;Parent=Physo135449;rank=1 scaffold_38 . exon 304533 304636 . - . ID=Physo135449.1;Parent=Physo135449;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 300109 301520 . + . ID=Physo157235;biotype=protein_coding;external_name=C_scaffold_38000024;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 300109 301520 . + . ID=Physo157235;Parent=Physo157235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 300109 300308 . + 0 ID=Physo157235;Parent=Physo157235;rank=1 scaffold_38 . exon 300109 300308 . + . ID=Physo157235.1;Parent=Physo157235;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 300378 300495 . + 0 ID=Physo157235;Parent=Physo157235;rank=2 scaffold_38 . exon 300378 300495 . + . ID=Physo157235.2;Parent=Physo157235;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 300569 300690 . + 0 ID=Physo157235;Parent=Physo157235;rank=3 scaffold_38 . exon 300569 300690 . + . ID=Physo157235.3;Parent=Physo157235;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_38 . CDS 300786 300898 . + 0 ID=Physo157235;Parent=Physo157235;rank=4 scaffold_38 . exon 300786 300898 . + . ID=Physo157235.4;Parent=Physo157235;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 300973 301037 . + 0 ID=Physo157235;Parent=Physo157235;rank=5 scaffold_38 . exon 300973 301037 . + . ID=Physo157235.5;Parent=Physo157235;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 301110 301520 . + 0 ID=Physo157235;Parent=Physo157235;rank=6 scaffold_38 . exon 301110 301520 . + . ID=Physo157235.6;Parent=Physo157235;constitutive=1;rank=6 scaffold_38 . repeat_region 305277 305311 . ? . description=dust scaffold_38 . repeat_region 305280 305311 . ? . description=trf scaffold_38 . repeat_region 307704 307732 . ? . description=trf scaffold_38 . repeat_region 308447 308480 . ? . description=trf scaffold_38 . repeat_region 308711 308740 . ? . description=trf scaffold_38 . repeat_region 312182 312189 . ? . description=dust scaffold_38 . repeat_region 312478 312485 . ? . description=dust scaffold_38 ensembl protein_coding_gene 304927 306024 . + . ID=Physo135450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380084;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 304927 306024 . + . ID=Physo135450;Parent=Physo135450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 304927 305236 . + 0 ID=Physo135450;Parent=Physo135450;rank=1 scaffold_38 . exon 304927 305236 . + . ID=Physo135450.1;Parent=Physo135450;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 305323 305402 . + 0 ID=Physo135450;Parent=Physo135450;rank=2 scaffold_38 . exon 305323 305402 . + . ID=Physo135450.2;Parent=Physo135450;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 305514 305645 . + 0 ID=Physo135450;Parent=Physo135450;rank=3 scaffold_38 . exon 305514 305645 . + . ID=Physo135450.3;Parent=Physo135450;constitutive=1;rank=3 scaffold_38 . CDS 305719 305856 . + 0 ID=Physo135450;Parent=Physo135450;rank=4 scaffold_38 . exon 305719 306024 . + . ID=Physo135450.4;Parent=Physo135450;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_38 ensembl protein_coding_gene 308943 309829 . + . ID=Physo135451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380085;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 308943 309829 . + . ID=Physo135451;Parent=Physo135451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 308943 309255 . + 0 ID=Physo135451;Parent=Physo135451;rank=1 scaffold_38 . exon 308943 309255 . + . ID=Physo135451.1;Parent=Physo135451;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 309323 309570 . + 0 ID=Physo135451;Parent=Physo135451;rank=2 scaffold_38 . exon 309323 309570 . + . ID=Physo135451.2;Parent=Physo135451;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 309646 309756 . + 0 ID=Physo135451;Parent=Physo135451;rank=3 scaffold_38 . exon 309646 309829 . + . ID=Physo135451.3;Parent=Physo135451;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_38 ensembl protein_coding_gene 309882 311899 . - . ID=Physo135452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380086;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 309882 311899 . - . ID=Physo135452;Parent=Physo135452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 309882 310121 . - 0 ID=Physo135452;Parent=Physo135452;rank=3 scaffold_38 . exon 309882 310121 . - . ID=Physo135452.3;Parent=Physo135452;constitutive=1;rank=3 scaffold_38 . CDS 310251 310567 . - 0 ID=Physo135452;Parent=Physo135452;rank=2 scaffold_38 . exon 310251 310567 . - . ID=Physo135452.2;Parent=Physo135452;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 310990 311899 . - 0 ID=Physo135452;Parent=Physo135452;rank=1 scaffold_38 . exon 310990 311899 . - . ID=Physo135452.1;Parent=Physo135452;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 314261 315216 . - . ID=Physo135453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380087;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 314261 315216 . - . ID=Physo135453;Parent=Physo135453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 314261 314303 . - 0 ID=Physo135453;Parent=Physo135453;rank=3 scaffold_38 . exon 314261 314303 . - . ID=Physo135453.3;Parent=Physo135453;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 314497 315084 . - 0 ID=Physo135453;Parent=Physo135453;rank=2 scaffold_38 . exon 314497 315084 . - . ID=Physo135453.2;Parent=Physo135453;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_38 . CDS 315203 315216 . - 0 ID=Physo135453;Parent=Physo135453;rank=1 scaffold_38 . biological_region 324346 324351 0.999 + . logic_name=eponine scaffold_38 . exon 315203 315216 . - . ID=Physo135453.1;Parent=Physo135453;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 316832 318818 . - . ID=Physo135454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380088;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 316832 318818 . - . ID=Physo135454;Parent=Physo135454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 316832 317060 . - 0 ID=Physo135454;Parent=Physo135454;rank=3 scaffold_38 . exon 316832 317060 . - . ID=Physo135454.3;Parent=Physo135454;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 317446 317587 . - 0 ID=Physo135454;Parent=Physo135454;rank=2 scaffold_38 . exon 317446 317587 . - . ID=Physo135454.2;Parent=Physo135454;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . CDS 317675 318818 . - 0 ID=Physo135454;Parent=Physo135454;rank=1 scaffold_38 . exon 317675 318818 . - . ID=Physo135454.1;Parent=Physo135454;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 321034 323850 . - . ID=Physo135455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380089;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 321034 323850 . - . ID=Physo135455;Parent=Physo135455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 321034 321038 . - 0 ID=Physo135455;Parent=Physo135455;rank=6 scaffold_38 . exon 321034 321038 . - . ID=Physo135455.7;Parent=Physo135455;constitutive=1;ensembl_phase=1;rank=7 scaffold_38 . CDS 321094 321375 . - 0 ID=Physo135455;Parent=Physo135455;rank=5 scaffold_38 . exon 321094 321375 . - . ID=Physo135455.6;Parent=Physo135455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 321443 322521 . - 0 ID=Physo135455;Parent=Physo135455;rank=4 scaffold_38 . exon 321443 322521 . - . ID=Physo135455.5;Parent=Physo135455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_38 . CDS 322680 322817 . - 0 ID=Physo135455;Parent=Physo135455;rank=3 scaffold_38 . exon 322680 322817 . - . ID=Physo135455.4;Parent=Physo135455;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_38 . CDS 323063 323107 . - 0 ID=Physo135455;Parent=Physo135455;rank=2 scaffold_38 . exon 323063 323107 . - . ID=Physo135455.3;Parent=Physo135455;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_38 . CDS 323276 323424 . - 0 ID=Physo135455;Parent=Physo135455;rank=1 scaffold_38 . exon 323276 323454 . - . ID=Physo135455.2;Parent=Physo135455;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_38 . exon 323664 323850 . - . ID=Physo135455.1;Parent=Physo135455;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_38 ensembl protein_coding_gene 324047 326673 . - . ID=Physo135456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380090;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 324047 326673 . - . ID=Physo135456;Parent=Physo135456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 324047 325035 . - . ID=Physo135456.3;Parent=Physo135456;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_38 . CDS 324232 325035 . - 0 ID=Physo135456;Parent=Physo135456;rank=3 scaffold_38 . CDS 325119 325227 . - 0 ID=Physo135456;Parent=Physo135456;rank=2 scaffold_38 . CDS 325301 326673 . - 0 ID=Physo135456;Parent=Physo135456;rank=1 scaffold_38 . repeat_region 326286 326314 . ? . description=trf scaffold_38 . repeat_region 330238 330246 . ? . description=dust scaffold_38 . exon 325119 325227 . - . ID=Physo135456.2;Parent=Physo135456;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . exon 325301 326673 . - . ID=Physo135456.1;Parent=Physo135456;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 327485 329747 . + . ID=Physo135457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380091;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 327485 329747 . + . ID=Physo135457;Parent=Physo135457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 327485 327810 . + 0 ID=Physo135457;Parent=Physo135457;rank=1 scaffold_38 . exon 327485 327810 . + . ID=Physo135457.1;Parent=Physo135457;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 327880 328195 . + 0 ID=Physo135457;Parent=Physo135457;rank=2 scaffold_38 . exon 327880 328195 . + . ID=Physo135457.2;Parent=Physo135457;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 328281 329747 . + 0 ID=Physo135457;Parent=Physo135457;rank=3 scaffold_38 . exon 328281 329747 . + . ID=Physo135457.3;Parent=Physo135457;constitutive=1;rank=3 scaffold_38 . biological_region 337783 337789 0.999 + . logic_name=eponine scaffold_38 . biological_region 342340 342340 0.999 - . logic_name=eponine scaffold_38 . biological_region 343959 343961 0.999 + . logic_name=eponine scaffold_38 ensembl protein_coding_gene 339481 340584 . + . ID=Physo135458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380092;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 339481 340584 . + . ID=Physo135458;Parent=Physo135458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 339481 340584 . + 0 ID=Physo135458;Parent=Physo135458;rank=1 scaffold_38 . exon 339481 340584 . + . ID=Physo135458.1;Parent=Physo135458;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 341081 341767 . + . ID=Physo135459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380093;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 341081 341767 . + . ID=Physo135459;Parent=Physo135459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 341081 341767 . + 0 ID=Physo135459;Parent=Physo135459;rank=1 scaffold_38 . exon 341081 341767 . + . ID=Physo135459.1;Parent=Physo135459;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 342053 344665 . + . ID=Physo135460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380094;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 342053 344665 . + . ID=Physo135460;Parent=Physo135460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 342053 344494 . + 0 ID=Physo135460;Parent=Physo135460;rank=1 scaffold_38 . exon 342053 344665 . + . ID=Physo135460.1;Parent=Physo135460;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_38 . repeat_region 344944 344965 . ? . description=trf scaffold_38 . repeat_region 346535 346573 . ? . description=dust scaffold_38 . repeat_region 346598 346654 . ? . description=dust scaffold_38 . repeat_region 346895 346938 . ? . description=dust scaffold_38 . repeat_region 353245 353254 . ? . description=dust scaffold_38 ensembl protein_coding_gene 344722 345619 . - . ID=Physo135461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380095;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 344722 345619 . - . ID=Physo135461;Parent=Physo135461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 344722 345483 . - 0 ID=Physo135461;Parent=Physo135461;rank=2 scaffold_38 . exon 344722 345483 . - . ID=Physo135461.2;Parent=Physo135461;constitutive=1;rank=2 scaffold_38 . CDS 345548 345619 . - 0 ID=Physo135461;Parent=Physo135461;rank=1 scaffold_38 . exon 345548 345619 . - . ID=Physo135461.1;Parent=Physo135461;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 346484 349019 . + . ID=Physo135462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380096;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 346484 349019 . + . ID=Physo135462;Parent=Physo135462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 346484 347737 . + . ID=Physo135462.1;Parent=Physo135462;constitutive=1;ensembl_phase=-1;rank=1 scaffold_38 . CDS 346493 347737 . + 0 ID=Physo135462;Parent=Physo135462;rank=1 scaffold_38 . CDS 347808 347939 . + 0 ID=Physo135462;Parent=Physo135462;rank=2 scaffold_38 . exon 347808 347939 . + . ID=Physo135462.2;Parent=Physo135462;constitutive=1;rank=2 scaffold_38 . CDS 348015 349019 . + 0 ID=Physo135462;Parent=Physo135462;rank=3 scaffold_38 . exon 348015 349019 . + . ID=Physo135462.3;Parent=Physo135462;constitutive=1;rank=3 scaffold_38 ensembl protein_coding_gene 352718 353355 . + . ID=Physo135463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380097;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 352718 353355 . + . ID=Physo135463;Parent=Physo135463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 352718 353194 . + 0 ID=Physo135463;Parent=Physo135463;rank=1 scaffold_38 . exon 352718 353194 . + . ID=Physo135463.1;Parent=Physo135463;constitutive=1;rank=1 scaffold_38 . CDS 353305 353355 . + 0 ID=Physo135463;Parent=Physo135463;rank=2 scaffold_38 . exon 353305 353355 . + . ID=Physo135463.2;Parent=Physo135463;constitutive=1;rank=2 scaffold_38 ensembl protein_coding_gene 353901 354722 . + . ID=Physo135464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380098;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 353901 354722 . + . ID=Physo135464;Parent=Physo135464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 353901 354255 . + . ID=Physo135464.1;Parent=Physo135464;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_38 . CDS 353990 354255 . + 0 ID=Physo135464;Parent=Physo135464;rank=1 scaffold_38 . CDS 354365 354722 . + 0 ID=Physo135464;Parent=Physo135464;rank=2 scaffold_38 . biological_region 355535 355538 0.999 - . logic_name=eponine scaffold_38 . biological_region 356027 356032 0.999 + . logic_name=eponine scaffold_38 . biological_region 356054 356060 0.999 - . logic_name=eponine scaffold_38 . biological_region 356096 356100 0.999 - . logic_name=eponine scaffold_38 . biological_region 356109 356116 0.999 + . logic_name=eponine scaffold_38 . biological_region 356560 356561 0.999 - . logic_name=eponine scaffold_38 . biological_region 357224 357225 0.999 - . logic_name=eponine scaffold_38 . biological_region 360756 360756 0.999 + . logic_name=eponine scaffold_38 . biological_region 360865 360867 0.999 - . logic_name=eponine scaffold_38 . biological_region 360884 360888 0.999 - . logic_name=eponine scaffold_38 . biological_region 361655 361660 0.999 - . logic_name=eponine scaffold_38 . exon 354365 354722 . + . ID=Physo135464.2;Parent=Physo135464;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 ensembl protein_coding_gene 357052 357957 . + . ID=Physo135466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380100;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 357052 357957 . + . ID=Physo135466;Parent=Physo135466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 357052 357450 . + 0 ID=Physo135466;Parent=Physo135466;rank=1 scaffold_38 . exon 357052 357450 . + . ID=Physo135466.1;Parent=Physo135466;constitutive=1;rank=1 scaffold_38 . CDS 357474 357476 . + 0 ID=Physo135466;Parent=Physo135466;rank=2 scaffold_38 . exon 357474 357529 . + . ID=Physo135466.2;Parent=Physo135466;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_38 . exon 357610 357957 . + . ID=Physo135466.3;Parent=Physo135466;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_38 ensembl protein_coding_gene 357925 361915 . - . ID=Physo135467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380101;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 357925 361915 . - . ID=Physo135467;Parent=Physo135467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 357925 357975 . - 0 ID=Physo135467;Parent=Physo135467;rank=2 scaffold_38 . exon 357925 357975 . - . ID=Physo135467.2;Parent=Physo135467;constitutive=1;rank=2 scaffold_38 . CDS 358133 361915 . - 0 ID=Physo135467;Parent=Physo135467;rank=1 scaffold_38 . exon 358133 361915 . - . ID=Physo135467.1;Parent=Physo135467;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 355879 356910 . + . ID=Physo157237;biotype=protein_coding;external_name=C_scaffold_38000026;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 355879 356910 . + . ID=Physo157237;Parent=Physo157237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 355879 356910 . + 0 ID=Physo157237;Parent=Physo157237;rank=1 scaffold_38 . exon 355879 356910 . + . ID=Physo157237.1;Parent=Physo157237;constitutive=1;rank=1 scaffold_38 . repeat_region 364841 364854 . ? . description=dust scaffold_38 . repeat_region 369448 369456 . ? . description=dust scaffold_38 . repeat_region 372691 372845 . + . description=(CAG)n scaffold_38 . repeat_region 372738 372786 . ? . description=trf scaffold_38 . biological_region 376154 376155 0.999 - . logic_name=eponine scaffold_38 . biological_region 379204 379210 0.999 + . logic_name=eponine scaffold_38 . biological_region 380662 380666 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 378897 379772 . + . ID=Physo135468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380102;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 378897 379772 . + . ID=Physo135468;Parent=Physo135468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 378897 379772 . + 0 ID=Physo135468;Parent=Physo135468;rank=1 scaffold_38 . exon 378897 379772 . + . ID=Physo135468.1;Parent=Physo135468;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 383299 384132 . - . ID=Physo135469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380103;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 383299 384132 . - . ID=Physo135469;Parent=Physo135469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 383299 383527 . - 0 ID=Physo135469;Parent=Physo135469;rank=3 scaffold_38 . exon 383299 383527 . - . ID=Physo135469.3;Parent=Physo135469;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 383579 383648 . - 0 ID=Physo135469;Parent=Physo135469;rank=2 scaffold_38 . CDS 383952 384132 . - 0 ID=Physo135469;Parent=Physo135469;rank=1 scaffold_38 . repeat_region 384061 384120 . + . description=(CAG)n scaffold_38 . repeat_region 388934 388945 . ? . description=dust scaffold_38 . repeat_region 389252 389264 . ? . description=dust scaffold_38 . repeat_region 389911 389969 . ? . description=trf scaffold_38 . exon 383579 383648 . - . ID=Physo135469.2;Parent=Physo135469;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . exon 383952 384132 . - . ID=Physo135469.1;Parent=Physo135469;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . biological_region 393781 393782 0.999 - . logic_name=eponine scaffold_38 . repeat_region 399447 401753 . + . description=GypsyPi-1c_I-int scaffold_38 . repeat_region 402107 402384 . + . description=GypsyPi-1c_I-int scaffold_38 . biological_region 402935 402938 0.999 + . logic_name=eponine scaffold_38 ensembl protein_coding_gene 393596 394288 . - . ID=Physo135470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380104;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 393596 394288 . - . ID=Physo135470;Parent=Physo135470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 393596 394133 . - 0 ID=Physo135470;Parent=Physo135470;rank=2 scaffold_38 . exon 393596 394133 . - . ID=Physo135470.2;Parent=Physo135470;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 394254 394288 . - 0 ID=Physo135470;Parent=Physo135470;rank=1 scaffold_38 . exon 394254 394288 . - . ID=Physo135470.1;Parent=Physo135470;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 399076 402149 . + . ID=Physo135471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380105;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 399076 402149 . + . ID=Physo135471;Parent=Physo135471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 399076 399637 . + 0 ID=Physo135471;Parent=Physo135471;rank=1 scaffold_38 . exon 399076 399637 . + . ID=Physo135471.1;Parent=Physo135471;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 399723 400383 . + 0 ID=Physo135471;Parent=Physo135471;rank=2 scaffold_38 . exon 399723 400383 . + . ID=Physo135471.2;Parent=Physo135471;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . CDS 400570 402102 . + 0 ID=Physo135471;Parent=Physo135471;rank=3 scaffold_38 . exon 400570 402102 . + . ID=Physo135471.3;Parent=Physo135471;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_38 . CDS 402143 402149 . + 0 ID=Physo135471;Parent=Physo135471;rank=4 scaffold_38 . exon 402143 402149 . + . ID=Physo135471.4;Parent=Physo135471;constitutive=1;ensembl_phase=2;rank=4 scaffold_38 . repeat_region 406669 406705 . ? . description=trf scaffold_38 . repeat_region 410559 410579 . ? . description=dust scaffold_38 . repeat_region 411714 411735 . ? . description=dust scaffold_38 . biological_region 415293 415295 0.999 - . logic_name=eponine scaffold_38 . repeat_region 421290 421761 . + . description=Gypsy-2-I_PI-int scaffold_38 ensembl protein_coding_gene 418372 419878 . + . ID=Physo135472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380106;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 418372 419878 . + . ID=Physo135472;Parent=Physo135472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 418372 419197 . + 0 ID=Physo135472;Parent=Physo135472;rank=1 scaffold_38 . exon 418372 419197 . + . ID=Physo135472.1;Parent=Physo135472;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 419430 419606 . + 0 ID=Physo135472;Parent=Physo135472;rank=2 scaffold_38 . exon 419430 419606 . + . ID=Physo135472.2;Parent=Physo135472;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 419664 419878 . + 0 ID=Physo135472;Parent=Physo135472;rank=3 scaffold_38 . exon 419664 419878 . + . ID=Physo135472.3;Parent=Physo135472;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 ensembl protein_coding_gene 421367 422278 . + . ID=Physo135473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380107;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 421367 422278 . + . ID=Physo135473;Parent=Physo135473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 421367 422278 . + 0 ID=Physo135473;Parent=Physo135473;rank=1 scaffold_38 . exon 421367 422278 . + . ID=Physo135473.1;Parent=Physo135473;constitutive=1;rank=1 scaffold_38 . repeat_region 428049 428129 . ? . description=trf scaffold_38 . repeat_region 429080 429087 . ? . description=dust scaffold_38 ensembl protein_coding_gene 424177 425070 . + . ID=Physo135474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380108;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 424177 425070 . + . ID=Physo135474;Parent=Physo135474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 424177 425070 . + 0 ID=Physo135474;Parent=Physo135474;rank=1 scaffold_38 . exon 424177 425070 . + . ID=Physo135474.1;Parent=Physo135474;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 426232 426708 . - . ID=Physo135475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380109;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 426232 426708 . - . ID=Physo135475;Parent=Physo135475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 426232 426708 . - 0 ID=Physo135475;Parent=Physo135475;rank=1 scaffold_38 . exon 426232 426708 . - . ID=Physo135475.1;Parent=Physo135475;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 426973 427473 . - . ID=Physo135476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380110;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 426973 427473 . - . ID=Physo135476;Parent=Physo135476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 426973 427473 . - 0 ID=Physo135476;Parent=Physo135476;rank=1 scaffold_38 . exon 426973 427473 . - . ID=Physo135476.1;Parent=Physo135476;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 427679 428005 . - . ID=Physo135477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380111;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 427679 428005 . - . ID=Physo135477;Parent=Physo135477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 427679 428005 . - 0 ID=Physo135477;Parent=Physo135477;rank=1 scaffold_38 . exon 427679 428005 . - . ID=Physo135477.1;Parent=Physo135477;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 429799 432381 . + . ID=Physo135478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380112;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 429799 432381 . + . ID=Physo135478;Parent=Physo135478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 429799 429950 . + 0 ID=Physo135478;Parent=Physo135478;rank=1 scaffold_38 . exon 429799 429950 . + . ID=Physo135478.1;Parent=Physo135478;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 430236 431533 . + 0 ID=Physo135478;Parent=Physo135478;rank=2 scaffold_38 . exon 430236 431533 . + . ID=Physo135478.2;Parent=Physo135478;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 431594 431612 . + 0 ID=Physo135478;Parent=Physo135478;rank=3 scaffold_38 . exon 431594 431612 . + . ID=Physo135478.3;Parent=Physo135478;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_38 . CDS 431634 431872 . + 0 ID=Physo135478;Parent=Physo135478;rank=4 scaffold_38 . exon 431634 431872 . + . ID=Physo135478.4;Parent=Physo135478;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_38 . CDS 431940 431948 . + 0 ID=Physo135478;Parent=Physo135478;rank=5 scaffold_38 . exon 431940 431948 . + . ID=Physo135478.5;Parent=Physo135478;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 432143 432381 . + 0 ID=Physo135478;Parent=Physo135478;rank=6 scaffold_38 . exon 432143 432381 . + . ID=Physo135478.6;Parent=Physo135478;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 ensembl protein_coding_gene 437600 439703 . - . ID=Physo135479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380113;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 437600 439703 . - . ID=Physo135479;Parent=Physo135479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 437600 437639 . - 0 ID=Physo135479;Parent=Physo135479;rank=7 scaffold_38 . exon 437600 437639 . - . ID=Physo135479.7;Parent=Physo135479;constitutive=1;ensembl_phase=2;rank=7 scaffold_38 . CDS 437745 438077 . - 0 ID=Physo135479;Parent=Physo135479;rank=6 scaffold_38 . exon 437745 438077 . - . ID=Physo135479.6;Parent=Physo135479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_38 . CDS 438420 438563 . - 0 ID=Physo135479;Parent=Physo135479;rank=5 scaffold_38 . exon 438420 438563 . - . ID=Physo135479.5;Parent=Physo135479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_38 . CDS 438640 438692 . - 0 ID=Physo135479;Parent=Physo135479;rank=4 scaffold_38 . exon 438640 438692 . - . ID=Physo135479.4;Parent=Physo135479;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_38 . CDS 438756 438884 . - 0 ID=Physo135479;Parent=Physo135479;rank=3 scaffold_38 . exon 438756 438884 . - . ID=Physo135479.3;Parent=Physo135479;constitutive=1;rank=3 scaffold_38 . CDS 438943 439089 . - 0 ID=Physo135479;Parent=Physo135479;rank=2 scaffold_38 . exon 438943 439089 . - . ID=Physo135479.2;Parent=Physo135479;constitutive=1;rank=2 scaffold_38 . CDS 439161 439703 . - 0 ID=Physo135479;Parent=Physo135479;rank=1 scaffold_38 . exon 439161 439703 . - . ID=Physo135479.1;Parent=Physo135479;constitutive=1;rank=1 scaffold_38 . biological_region 447166 447170 0.999 - . logic_name=eponine scaffold_38 . biological_region 447294 447296 0.999 - . logic_name=eponine scaffold_38 . repeat_region 447616 447919 . + . description=GypsyPi-1c_LTR scaffold_38 . repeat_region 447920 449850 . + . description=GypsyPi-1c_I-int scaffold_38 . biological_region 448420 448422 0.999 + . logic_name=eponine scaffold_38 . repeat_region 449829 449929 . ? . description=trf scaffold_38 . repeat_region 449879 449961 . ? . description=trf scaffold_38 . repeat_region 450031 450080 . ? . description=dust scaffold_38 . repeat_region 450081 454033 . + . description=GypsyPi-1c_I-int scaffold_38 . biological_region 451965 451969 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 448007 449010 . + . ID=Physo135480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380114;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 448007 449010 . + . ID=Physo135480;Parent=Physo135480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 448007 448243 . + 0 ID=Physo135480;Parent=Physo135480;rank=1 scaffold_38 . exon 448007 448243 . + . ID=Physo135480.1;Parent=Physo135480;constitutive=1;rank=1 scaffold_38 . CDS 448441 449010 . + 0 ID=Physo135480;Parent=Physo135480;rank=2 scaffold_38 . exon 448441 449010 . + . ID=Physo135480.2;Parent=Physo135480;constitutive=1;rank=2 scaffold_38 ensembl protein_coding_gene 450144 452208 . + . ID=Physo135481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380115;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 450144 452208 . + . ID=Physo135481;Parent=Physo135481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 450144 451141 . + 0 ID=Physo135481;Parent=Physo135481;rank=1 scaffold_38 . exon 450144 451141 . + . ID=Physo135481.1;Parent=Physo135481;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 451202 452117 . + 0 ID=Physo135481;Parent=Physo135481;rank=2 scaffold_38 . exon 451202 452117 . + . ID=Physo135481.2;Parent=Physo135481;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 452197 452208 . + 0 ID=Physo135481;Parent=Physo135481;rank=3 scaffold_38 . exon 452197 452208 . + . ID=Physo135481.3;Parent=Physo135481;constitutive=1;rank=3 scaffold_38 ensembl protein_coding_gene 452391 454737 . - . ID=Physo135482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380116;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 452391 454737 . - . ID=Physo135482;Parent=Physo135482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 452391 452396 . - 0 ID=Physo135482;Parent=Physo135482;rank=6 scaffold_38 . exon 452391 452396 . - . ID=Physo135482.6;Parent=Physo135482;constitutive=1;rank=6 scaffold_38 . CDS 452520 452810 . - 0 ID=Physo135482;Parent=Physo135482;rank=5 scaffold_38 . exon 452520 452810 . - . ID=Physo135482.5;Parent=Physo135482;constitutive=1;rank=5 scaffold_38 . CDS 452843 453688 . - 0 ID=Physo135482;Parent=Physo135482;rank=4 scaffold_38 . exon 452843 453688 . - . ID=Physo135482.4;Parent=Physo135482;constitutive=1;rank=4 scaffold_38 . CDS 453714 453720 . - 0 ID=Physo135482;Parent=Physo135482;rank=3 scaffold_38 . exon 453714 453720 . - . ID=Physo135482.3;Parent=Physo135482;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 453792 454107 . - 0 ID=Physo135482;Parent=Physo135482;rank=2 scaffold_38 . exon 453792 454107 . - . ID=Physo135482.2;Parent=Physo135482;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . CDS 454158 454737 . - 0 ID=Physo135482;Parent=Physo135482;rank=1 scaffold_38 . exon 454158 454737 . - . ID=Physo135482.1;Parent=Physo135482;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 456764 458136 . - . ID=Physo135483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380117;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 456764 458136 . - . ID=Physo135483;Parent=Physo135483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 456764 457528 . - 0 ID=Physo135483;Parent=Physo135483;rank=3 scaffold_38 . exon 456764 457528 . - . ID=Physo135483.3;Parent=Physo135483;constitutive=1;rank=3 scaffold_38 . CDS 457603 457969 . - 0 ID=Physo135483;Parent=Physo135483;rank=2 scaffold_38 . exon 457603 457969 . - . ID=Physo135483.2;Parent=Physo135483;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 458012 458136 . - 0 ID=Physo135483;Parent=Physo135483;rank=1 scaffold_38 . exon 458012 458136 . - . ID=Physo135483.1;Parent=Physo135483;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . biological_region 462791 462797 0.999 + . logic_name=eponine scaffold_38 . biological_region 463518 463524 0.999 + . logic_name=eponine scaffold_38 . biological_region 463656 463656 0.999 - . logic_name=eponine scaffold_38 . biological_region 464233 464237 0.999 + . logic_name=eponine scaffold_38 . repeat_region 465272 465328 . ? . description=trf scaffold_38 . repeat_region 467869 467876 . ? . description=dust scaffold_38 . repeat_region 470238 470305 . ? . description=trf scaffold_38 ensembl protein_coding_gene 462904 463389 . - . ID=Physo135484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380118;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 462904 463389 . - . ID=Physo135484;Parent=Physo135484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 462904 463052 . - 0 ID=Physo135484;Parent=Physo135484;rank=3 scaffold_38 . exon 462904 463052 . - . ID=Physo135484.3;Parent=Physo135484;constitutive=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 463121 463210 . - 0 ID=Physo135484;Parent=Physo135484;rank=2 scaffold_38 . exon 463121 463210 . - . ID=Physo135484.2;Parent=Physo135484;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 463260 463389 . - 0 ID=Physo135484;Parent=Physo135484;rank=1 scaffold_38 . exon 463260 463389 . - . ID=Physo135484.1;Parent=Physo135484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 470837 471901 . + . ID=Physo135485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380119;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 470837 471901 . + . ID=Physo135485;Parent=Physo135485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 470837 471901 . + 0 ID=Physo135485;Parent=Physo135485;rank=1 scaffold_38 . exon 470837 471901 . + . ID=Physo135485.1;Parent=Physo135485;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 473743 475777 . - . ID=Physo135487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380121;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 473743 475777 . - . ID=Physo135487;Parent=Physo135487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 473743 473846 . - 0 ID=Physo135487;Parent=Physo135487;rank=7 scaffold_38 . exon 473743 473846 . - . ID=Physo135487.7;Parent=Physo135487;constitutive=1;ensembl_phase=1;rank=7 scaffold_38 . CDS 473918 474116 . - 0 ID=Physo135487;Parent=Physo135487;rank=6 scaffold_38 . exon 473918 474116 . - . ID=Physo135487.6;Parent=Physo135487;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_38 . CDS 474195 474670 . - 0 ID=Physo135487;Parent=Physo135487;rank=5 scaffold_38 . exon 474195 474670 . - . ID=Physo135487.5;Parent=Physo135487;constitutive=1;ensembl_phase=1;rank=5 scaffold_38 . CDS 474746 474820 . - 0 ID=Physo135487;Parent=Physo135487;rank=4 scaffold_38 . exon 474746 474820 . - . ID=Physo135487.4;Parent=Physo135487;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 475215 475297 . - 0 ID=Physo135487;Parent=Physo135487;rank=3 scaffold_38 . exon 475215 475297 . - . ID=Physo135487.3;Parent=Physo135487;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 475379 475467 . - 0 ID=Physo135487;Parent=Physo135487;rank=2 scaffold_38 . exon 475379 475467 . - . ID=Physo135487.2;Parent=Physo135487;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 475553 475777 . - 0 ID=Physo135487;Parent=Physo135487;rank=1 scaffold_38 . exon 475553 475777 . - . ID=Physo135487.1;Parent=Physo135487;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 476045 476473 . + . ID=Physo135488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380122;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 476045 476473 . + . ID=Physo135488;Parent=Physo135488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 476045 476473 . + 0 ID=Physo135488;Parent=Physo135488;rank=1 scaffold_38 . exon 476045 476473 . + . ID=Physo135488.1;Parent=Physo135488;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 476619 478055 . - . ID=Physo135489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380123;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 476619 478055 . - . ID=Physo135489;Parent=Physo135489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 476619 478055 . - 0 ID=Physo135489;Parent=Physo135489;rank=1 scaffold_38 . exon 476619 478055 . - . ID=Physo135489.1;Parent=Physo135489;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 472898 473344 . + . ID=Physo157239;biotype=protein_coding;external_name=C_scaffold_38000028;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 472898 473344 . + . ID=Physo157239;Parent=Physo157239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 472898 473344 . + 0 ID=Physo157239;Parent=Physo157239;rank=1 scaffold_38 . exon 472898 473344 . + . ID=Physo157239.1;Parent=Physo157239;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 479072 480049 . + . ID=Physo157244;biotype=protein_coding;external_name=C_scaffold_38000033;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 479072 480049 . + . ID=Physo157244;Parent=Physo157244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 479072 480049 . + 0 ID=Physo157244;Parent=Physo157244;rank=1 scaffold_38 . exon 479072 480049 . + . ID=Physo157244.1;Parent=Physo157244;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 480182 482665 . - . ID=Physo157245;biotype=protein_coding;external_name=C_scaffold_38000034;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 480182 482665 . - . ID=Physo157245;Parent=Physo157245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 480182 480394 . - 0 ID=Physo157245;Parent=Physo157245;rank=5 scaffold_38 . exon 480182 480394 . - . ID=Physo157245.5;Parent=Physo157245;constitutive=1;rank=5 scaffold_38 . CDS 480437 481530 . - 0 ID=Physo157245;Parent=Physo157245;rank=4 scaffold_38 . exon 480437 481530 . - . ID=Physo157245.4;Parent=Physo157245;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 481627 481820 . - 0 ID=Physo157245;Parent=Physo157245;rank=3 scaffold_38 . exon 481627 481820 . - . ID=Physo157245.3;Parent=Physo157245;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 481926 482197 . - 0 ID=Physo157245;Parent=Physo157245;rank=2 scaffold_38 . CDS 482351 482665 . - 0 ID=Physo157245;Parent=Physo157245;rank=1 scaffold_38 . repeat_region 484056 484063 . ? . description=dust scaffold_38 . repeat_region 490850 490867 . ? . description=dust scaffold_38 . repeat_region 490912 490921 . ? . description=dust scaffold_38 . biological_region 491345 491348 0.999 - . logic_name=eponine scaffold_38 ensembl protein_coding_gene 482829 484008 . + . ID=Physo135492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380126;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 482829 484008 . + . ID=Physo135492;Parent=Physo135492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 482829 484008 . + . ID=Physo135492.1;Parent=Physo135492;constitutive=1;ensembl_phase=-1;rank=1 scaffold_38 . CDS 482833 484008 . + 0 ID=Physo135492;Parent=Physo135492;rank=1 scaffold_38 ensembl protein_coding_gene 490236 490682 . - . ID=Physo135493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380127;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 490236 490682 . - . ID=Physo135493;Parent=Physo135493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 490236 490682 . - 0 ID=Physo135493;Parent=Physo135493;rank=1 scaffold_38 . exon 490236 490682 . - . ID=Physo135493.1;Parent=Physo135493;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 491212 491697 . - . ID=Physo135494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380128;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 491212 491697 . - . ID=Physo135494;Parent=Physo135494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 491212 491697 . - 0 ID=Physo135494;Parent=Physo135494;rank=1 scaffold_38 . exon 491212 491697 . - . ID=Physo135494.1;Parent=Physo135494;constitutive=1;rank=1 scaffold_38 . exon 481926 482197 . - . ID=Physo157245.2;Parent=Physo157245;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . exon 482351 482665 . - . ID=Physo157245.1;Parent=Physo157245;constitutive=1;rank=1 scaffold_38 . repeat_region 498817 499079 . ? . description=trf scaffold_38 ensembl protein_coding_gene 492051 493025 . - . ID=Physo135495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380129;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 492051 493025 . - . ID=Physo135495;Parent=Physo135495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 492051 492441 . - 0 ID=Physo135495;Parent=Physo135495;rank=2 scaffold_38 . exon 492051 492441 . - . ID=Physo135495.2;Parent=Physo135495;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 . CDS 492601 493025 . - 0 ID=Physo135495;Parent=Physo135495;rank=1 scaffold_38 . exon 492601 493025 . - . ID=Physo135495.1;Parent=Physo135495;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 ensembl protein_coding_gene 494094 494505 . - . ID=Physo135496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380130;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 494094 494505 . - . ID=Physo135496;Parent=Physo135496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 494094 494357 . - 0 ID=Physo135496;Parent=Physo135496;rank=2 scaffold_38 . exon 494094 494357 . - . ID=Physo135496.2;Parent=Physo135496;constitutive=1;rank=2 scaffold_38 . CDS 494443 494505 . - 0 ID=Physo135496;Parent=Physo135496;rank=1 scaffold_38 . exon 494443 494505 . - . ID=Physo135496.1;Parent=Physo135496;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 494919 495401 . + . ID=Physo135497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380131;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 494919 495401 . + . ID=Physo135497;Parent=Physo135497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 494919 495401 . + 0 ID=Physo135497;Parent=Physo135497;rank=1 scaffold_38 . exon 494919 495401 . + . ID=Physo135497.1;Parent=Physo135497;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 495608 496108 . + . ID=Physo135498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380132;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 495608 496108 . + . ID=Physo135498;Parent=Physo135498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 495608 496108 . + 0 ID=Physo135498;Parent=Physo135498;rank=1 scaffold_38 . exon 495608 496108 . + . ID=Physo135498.1;Parent=Physo135498;constitutive=1;rank=1 scaffold_38 . repeat_region 503755 503762 . ? . description=dust scaffold_38 . repeat_region 505675 505683 . ? . description=dust scaffold_38 . biological_region 507781 507783 0.999 - . logic_name=eponine scaffold_38 . repeat_region 508372 508396 . ? . description=dust scaffold_38 . repeat_region 509042 509066 . ? . description=dust scaffold_38 ensembl protein_coding_gene 506093 514951 . + . ID=Physo135499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380133;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 506093 514951 . + . ID=Physo135499;Parent=Physo135499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 506093 506159 . + 0 ID=Physo135499;Parent=Physo135499;rank=1 scaffold_38 . exon 506093 506159 . + . ID=Physo135499.1;Parent=Physo135499;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 506425 506629 . + 0 ID=Physo135499;Parent=Physo135499;rank=2 scaffold_38 . exon 506425 506629 . + . ID=Physo135499.2;Parent=Physo135499;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_38 . CDS 506874 507081 . + 0 ID=Physo135499;Parent=Physo135499;rank=3 scaffold_38 . exon 506874 507081 . + . ID=Physo135499.3;Parent=Physo135499;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 507165 507794 . + 0 ID=Physo135499;Parent=Physo135499;rank=4 scaffold_38 . exon 507165 507794 . + . ID=Physo135499.4;Parent=Physo135499;constitutive=1;rank=4 scaffold_38 . CDS 507845 508781 . + 0 ID=Physo135499;Parent=Physo135499;rank=5 scaffold_38 . exon 507845 508781 . + . ID=Physo135499.5;Parent=Physo135499;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_38 . CDS 508914 509326 . + 0 ID=Physo135499;Parent=Physo135499;rank=6 scaffold_38 . exon 508914 509326 . + . ID=Physo135499.6;Parent=Physo135499;constitutive=1;ensembl_phase=1;rank=6 scaffold_38 . CDS 509520 509863 . + 0 ID=Physo135499;Parent=Physo135499;rank=7 scaffold_38 . exon 509520 509863 . + . ID=Physo135499.7;Parent=Physo135499;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_38 . CDS 509883 510726 . + 0 ID=Physo135499;Parent=Physo135499;rank=8 scaffold_38 . exon 509883 510726 . + . ID=Physo135499.8;Parent=Physo135499;constitutive=1;ensembl_phase=2;rank=8 scaffold_38 . CDS 511081 513403 . + 0 ID=Physo135499;Parent=Physo135499;rank=9 scaffold_38 . exon 511081 513403 . + . ID=Physo135499.9;Parent=Physo135499;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_38 . CDS 513801 514103 . + 0 ID=Physo135499;Parent=Physo135499;rank=10 scaffold_38 . CDS 514128 514951 . + 0 ID=Physo135499;Parent=Physo135499;rank=11 scaffold_38 . repeat_region 520765 520951 . - . description=GypsyPi-1c_LTR scaffold_38 . exon 513801 514103 . + . ID=Physo135499.10;Parent=Physo135499;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_38 . exon 514128 514951 . + . ID=Physo135499.11;Parent=Physo135499;constitutive=1;ensembl_phase=1;rank=11 scaffold_38 ensembl protein_coding_gene 515144 516693 . - . ID=Physo135500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380134;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 515144 516693 . - . ID=Physo135500;Parent=Physo135500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 515144 516274 . - 0 ID=Physo135500;Parent=Physo135500;rank=2 scaffold_38 . exon 515144 516274 . - . ID=Physo135500.2;Parent=Physo135500;constitutive=1;rank=2 scaffold_38 . CDS 516382 516693 . - 0 ID=Physo135500;Parent=Physo135500;rank=1 scaffold_38 . exon 516382 516693 . - . ID=Physo135500.1;Parent=Physo135500;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 517334 517843 . + . ID=Physo135501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380135;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 517334 517843 . + . ID=Physo135501;Parent=Physo135501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 517334 517843 . + 0 ID=Physo135501;Parent=Physo135501;rank=1 scaffold_38 . exon 517334 517843 . + . ID=Physo135501.1;Parent=Physo135501;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 519477 520055 . + . ID=Physo135502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380136;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 519477 520055 . + . ID=Physo135502;Parent=Physo135502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 519477 519912 . + 0 ID=Physo135502;Parent=Physo135502;rank=1 scaffold_38 . exon 519477 519912 . + . ID=Physo135502.1;Parent=Physo135502;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 . CDS 520024 520055 . + 0 ID=Physo135502;Parent=Physo135502;rank=2 scaffold_38 . exon 520024 520055 . + . ID=Physo135502.2;Parent=Physo135502;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . biological_region 521219 521219 0.999 - . logic_name=eponine scaffold_38 . repeat_region 522179 522314 . ? . description=trf scaffold_38 . repeat_region 522555 522632 . - . description=GypsyPi-1c_I-int scaffold_38 . biological_region 523258 523260 0.999 - . logic_name=eponine scaffold_38 . repeat_region 523485 523669 . - . description=GypsyPi-1c_I-int scaffold_38 . repeat_region 523506 523824 . ? . description=trf scaffold_38 . repeat_region 523641 525763 . - . description=GypsyPi-1c_I-int scaffold_38 . repeat_region 524317 524360 . ? . description=trf scaffold_38 . repeat_region 524317 524366 . ? . description=trf scaffold_38 . biological_region 525259 525261 0.999 - . logic_name=eponine scaffold_38 . repeat_region 528609 528622 . ? . description=dust scaffold_38 . repeat_region 528651 528727 . ? . description=trf scaffold_38 ensembl protein_coding_gene 524712 525676 . - . ID=Physo135503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380137;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 524712 525676 . - . ID=Physo135503;Parent=Physo135503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 524712 525239 . - 0 ID=Physo135503;Parent=Physo135503;rank=2 scaffold_38 . exon 524712 525239 . - . ID=Physo135503.2;Parent=Physo135503;constitutive=1;rank=2 scaffold_38 . CDS 525293 525676 . - 0 ID=Physo135503;Parent=Physo135503;rank=1 scaffold_38 . exon 525293 525676 . - . ID=Physo135503.1;Parent=Physo135503;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 529012 529470 . - . ID=Physo135504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380138;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 529012 529470 . - . ID=Physo135504;Parent=Physo135504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 529012 529470 . - 0 ID=Physo135504;Parent=Physo135504;rank=1 scaffold_38 . exon 529012 529470 . - . ID=Physo135504.1;Parent=Physo135504;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 530521 530997 . + . ID=Physo135505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380139;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 530521 530997 . + . ID=Physo135505;Parent=Physo135505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 530521 530997 . + 0 ID=Physo135505;Parent=Physo135505;rank=1 scaffold_38 . exon 530521 530997 . + . ID=Physo135505.1;Parent=Physo135505;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 535793 537226 . - . ID=Physo135506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380140;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 535793 537226 . - . ID=Physo135506;Parent=Physo135506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 535793 536346 . - 0 ID=Physo135506;Parent=Physo135506;rank=2 scaffold_38 . exon 535793 536346 . - . ID=Physo135506.2;Parent=Physo135506;constitutive=1;ensembl_phase=1;rank=2 scaffold_38 . CDS 536734 537226 . - 0 ID=Physo135506;Parent=Physo135506;rank=1 scaffold_38 . exon 536734 537226 . - . ID=Physo135506.1;Parent=Physo135506;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 538919 541238 . - . ID=Physo135507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380141;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 538919 541238 . - . ID=Physo135507;Parent=Physo135507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 538919 539361 . - 0 ID=Physo135507;Parent=Physo135507;rank=4 scaffold_38 . exon 538919 539361 . - . ID=Physo135507.4;Parent=Physo135507;constitutive=1;ensembl_phase=1;rank=4 scaffold_38 . CDS 540009 540362 . - 0 ID=Physo135507;Parent=Physo135507;rank=3 scaffold_38 . exon 540009 540362 . - . ID=Physo135507.3;Parent=Physo135507;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_38 . CDS 540832 541113 . - 0 ID=Physo135507;Parent=Physo135507;rank=2 scaffold_38 . CDS 541181 541238 . - 0 ID=Physo135507;Parent=Physo135507;rank=1 scaffold_38 . repeat_region 541160 541168 . ? . description=dust scaffold_38 . exon 540832 541113 . - . ID=Physo135507.2;Parent=Physo135507;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_38 . exon 541181 541238 . - . ID=Physo135507.1;Parent=Physo135507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 550036 551371 . - . ID=Physo135508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380142;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 550036 551371 . - . ID=Physo135508;Parent=Physo135508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . exon 550036 550660 . - . ID=Physo135508.2;Parent=Physo135508;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_38 . CDS 550068 550660 . - 0 ID=Physo135508;Parent=Physo135508;rank=2 scaffold_38 . CDS 550729 551371 . - 0 ID=Physo135508;Parent=Physo135508;rank=1 scaffold_38 . biological_region 554608 554611 0.999 + . logic_name=eponine scaffold_38 . biological_region 554980 554984 0.999 + . logic_name=eponine scaffold_38 . biological_region 559474 559475 0.999 - . logic_name=eponine scaffold_38 . exon 550729 551371 . - . ID=Physo135508.1;Parent=Physo135508;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_38 ensembl protein_coding_gene 551549 552865 . - . ID=Physo135509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380143;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 551549 552865 . - . ID=Physo135509;Parent=Physo135509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 551549 552865 . - 0 ID=Physo135509;Parent=Physo135509;rank=1 scaffold_38 . exon 551549 552865 . - . ID=Physo135509.1;Parent=Physo135509;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 553681 554772 . + . ID=Physo135510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380144;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 553681 554772 . + . ID=Physo135510;Parent=Physo135510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 553681 553910 . + 0 ID=Physo135510;Parent=Physo135510;rank=1 scaffold_38 . exon 553681 553910 . + . ID=Physo135510.1;Parent=Physo135510;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_38 . CDS 554025 554772 . + 0 ID=Physo135510;Parent=Physo135510;rank=2 scaffold_38 . exon 554025 554772 . + . ID=Physo135510.2;Parent=Physo135510;constitutive=1;ensembl_phase=2;rank=2 scaffold_38 ensembl protein_coding_gene 554917 562419 . - . ID=Physo135511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380145;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 554917 562419 . - . ID=Physo135511;Parent=Physo135511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 554917 560023 . - 0 ID=Physo135511;Parent=Physo135511;rank=3 scaffold_38 . exon 554917 560023 . - . ID=Physo135511.3;Parent=Physo135511;constitutive=1;ensembl_phase=2;rank=3 scaffold_38 . CDS 560238 560305 . - 0 ID=Physo135511;Parent=Physo135511;rank=2 scaffold_38 . exon 560238 560305 . - . ID=Physo135511.2;Parent=Physo135511;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_38 . CDS 560368 562419 . - 0 ID=Physo135511;Parent=Physo135511;rank=1 scaffold_38 . repeat_region 568266 568282 . ? . description=dust scaffold_38 . repeat_region 569475 569483 . ? . description=dust scaffold_38 . exon 560368 562419 . - . ID=Physo135511.1;Parent=Physo135511;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 563394 567057 . + . ID=Physo135512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380146;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 563394 567057 . + . ID=Physo135512;Parent=Physo135512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 563394 566525 . + 0 ID=Physo135512;Parent=Physo135512;rank=1 scaffold_38 . exon 563394 566525 . + . ID=Physo135512.1;Parent=Physo135512;constitutive=1;rank=1 scaffold_38 . CDS 566593 567057 . + 0 ID=Physo135512;Parent=Physo135512;rank=2 scaffold_38 . exon 566593 567057 . + . ID=Physo135512.2;Parent=Physo135512;constitutive=1;rank=2 scaffold_38 . biological_region 572747 572751 0.999 - . logic_name=eponine scaffold_38 . repeat_region 574930 575008 . ? . description=trf scaffold_38 . repeat_region 574930 575008 . + . description=(CAGA)n scaffold_38 . biological_region 578595 578601 0.999 - . logic_name=eponine scaffold_38 . repeat_region 579828 579950 . ? . description=trf scaffold_38 . repeat_region 579828 579950 . + . description=(TCTG)n scaffold_38 ensembl tRNA_gene 574698 574769 . - . ID=EPrPSOG00000000162;biotype=tRNA;description=tRNA-Gly for anticodon CCC [Source:TRNASCAN_SE%3BAcc:tRNA-Gly];external_name=tRNA-Gly;logic_name=ncrna_eg scaffold_38 ensembl transcript 574698 574769 . - . ID=EPrPSOT00000000162;Parent=EPrPSOG00000000162;biotype=tRNA;logic_name=ncrna_eg scaffold_38 . exon 574698 574769 . - . ID=EPrPSOE00000000162;Parent=EPrPSOT00000000162;constitutive=1;rank=1 scaffold_38 ensembl protein_coding_gene 578550 579176 . - . ID=Physo135513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_380147;logic_name=jgi_physo1_1 scaffold_38 ensembl transcript 578550 579176 . - . ID=Physo135513;Parent=Physo135513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_38 . CDS 578550 578597 . - 0 ID=Physo135513;Parent=Physo135513;rank=4 scaffold_38 . exon 578550 578597 . - . ID=Physo135513.4;Parent=Physo135513;constitutive=1;rank=4 scaffold_38 . CDS 578631 578735 . - 0 ID=Physo135513;Parent=Physo135513;rank=3 scaffold_38 . exon 578631 578735 . - . ID=Physo135513.3;Parent=Physo135513;constitutive=1;rank=3 scaffold_38 . CDS 578755 578934 . - 0 ID=Physo135513;Parent=Physo135513;rank=2 scaffold_38 . exon 578755 578934 . - . ID=Physo135513.2;Parent=Physo135513;constitutive=1;rank=2 scaffold_38 . CDS 578997 579176 . - 0 ID=Physo135513;Parent=Physo135513;rank=1 scaffold_38 . exon 578997 579176 . - . ID=Physo135513.1;Parent=Physo135513;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_39 1 598463 scaffold_39 . repeat_region 4 374 . ? . description=dust scaffold_39 . repeat_region 9 374 . ? . description=trf scaffold_39 . repeat_region 955 1544 . ? . description=dust scaffold_39 . biological_region 1786 1792 0.999 + . logic_name=eponine scaffold_39 . biological_region 1792 1797 0.999 - . logic_name=eponine scaffold_39 . biological_region 1808 1811 0.999 + . logic_name=eponine scaffold_39 . biological_region 1830 1835 0.999 - . logic_name=eponine scaffold_39 . biological_region 1867 1873 0.999 + . logic_name=eponine scaffold_39 . repeat_region 6338 6350 . ? . description=dust scaffold_39 . repeat_region 6761 6773 . ? . description=dust scaffold_39 . repeat_region 7609 7616 . ? . description=dust scaffold_39 . repeat_region 9319 9348 . ? . description=trf scaffold_39 ensembl protein_coding_gene 9281 9808 . + . ID=Physo135514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390001;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 9281 9808 . + . ID=Physo135514;Parent=Physo135514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 9281 9808 . + 0 ID=Physo135514;Parent=Physo135514;rank=1 scaffold_39 . exon 9281 9808 . + . ID=Physo135514.1;Parent=Physo135514;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 19580 21248 . + . ID=Physo117121;biotype=protein_coding;external_name=estExt_Genewise1.C_390014;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 19580 21248 . + . ID=Physo117121;Parent=Physo117121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 19580 20031 . + . ID=Physo117121.1;Parent=Physo117121;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_39 . CDS 19604 20031 . + 0 ID=Physo117121;Parent=Physo117121;rank=1 scaffold_39 . CDS 20106 20190 . + 0 ID=Physo117121;Parent=Physo117121;rank=2 scaffold_39 . CDS 20272 20580 . + 0 ID=Physo117121;Parent=Physo117121;rank=3 scaffold_39 . CDS 20656 21180 . + 0 ID=Physo117121;Parent=Physo117121;rank=4 scaffold_39 ensembl protein_coding_gene 15810 17044 . - . ID=Physo135515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390002;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 15810 17044 . - . ID=Physo135515;Parent=Physo135515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 15810 17039 . - 0 ID=Physo135515;Parent=Physo135515;rank=1 scaffold_39 . exon 15810 17044 . - . ID=Physo135515.1;Parent=Physo135515;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 ensembl protein_coding_gene 18374 18856 . + . ID=Physo135516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390003;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 18374 18856 . + . ID=Physo135516;Parent=Physo135516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 18374 18856 . + 0 ID=Physo135516;Parent=Physo135516;rank=1 scaffold_39 . exon 18374 18856 . + . ID=Physo135516.1;Parent=Physo135516;constitutive=1;rank=1 scaffold_39 . repeat_region 22575 22582 . ? . description=dust scaffold_39 . biological_region 23210 23215 0.999 - . logic_name=eponine scaffold_39 . biological_region 23543 23545 0.999 + . logic_name=eponine scaffold_39 . biological_region 23744 23746 0.999 - . logic_name=eponine scaffold_39 . biological_region 24198 24201 0.999 - . logic_name=eponine scaffold_39 . biological_region 24355 24358 0.999 + . logic_name=eponine scaffold_39 . biological_region 25435 25439 0.999 - . logic_name=eponine scaffold_39 . biological_region 25458 25460 0.999 - . logic_name=eponine scaffold_39 . biological_region 25535 25538 0.999 - . logic_name=eponine scaffold_39 . biological_region 27687 27691 0.999 + . logic_name=eponine scaffold_39 . biological_region 27831 27833 0.999 + . logic_name=eponine scaffold_39 . biological_region 28402 28407 0.999 - . logic_name=eponine scaffold_39 . biological_region 28609 28614 0.999 + . logic_name=eponine scaffold_39 . biological_region 28685 28691 0.999 - . logic_name=eponine scaffold_39 . exon 20106 20190 . + . ID=Physo117121.2;Parent=Physo117121;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . exon 20272 20580 . + . ID=Physo117121.3;Parent=Physo117121;constitutive=1;rank=3 scaffold_39 . exon 20656 21248 . + . ID=Physo117121.4;Parent=Physo117121;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_39 ensembl protein_coding_gene 23587 24816 . + . ID=Physo135519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390006;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 23587 24816 . + . ID=Physo135519;Parent=Physo135519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 23587 24816 . + 0 ID=Physo135519;Parent=Physo135519;rank=1 scaffold_39 . exon 23587 24816 . + . ID=Physo135519.1;Parent=Physo135519;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 25274 26343 . - . ID=Physo135520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390007;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 25274 26343 . - . ID=Physo135520;Parent=Physo135520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 25274 26134 . - 0 ID=Physo135520;Parent=Physo135520;rank=2 scaffold_39 . exon 25274 26134 . - . ID=Physo135520.2;Parent=Physo135520;constitutive=1;rank=2 scaffold_39 . CDS 26293 26343 . - 0 ID=Physo135520;Parent=Physo135520;rank=1 scaffold_39 . exon 26293 26343 . - . ID=Physo135520.1;Parent=Physo135520;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 27062 28336 . + . ID=Physo135521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390008;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 27062 28336 . + . ID=Physo135521;Parent=Physo135521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 27062 28336 . + 0 ID=Physo135521;Parent=Physo135521;rank=1 scaffold_39 . exon 27062 28336 . + . ID=Physo135521.1;Parent=Physo135521;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 28585 30908 . + . ID=Physo135522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390009;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 28585 30908 . + . ID=Physo135522;Parent=Physo135522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 28585 30650 . + 0 ID=Physo135522;Parent=Physo135522;rank=1 scaffold_39 . exon 28585 30650 . + . ID=Physo135522.1;Parent=Physo135522;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 30742 30778 . + 0 ID=Physo135522;Parent=Physo135522;rank=2 scaffold_39 . repeat_region 36555 36649 . ? . description=trf scaffold_39 . exon 30742 30908 . + . ID=Physo135522.2;Parent=Physo135522;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_39 ensembl protein_coding_gene 30911 32467 . - . ID=Physo135523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390010;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 30911 32467 . - . ID=Physo135523;Parent=Physo135523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 30911 32467 . - 0 ID=Physo135523;Parent=Physo135523;rank=1 scaffold_39 . exon 30911 32467 . - . ID=Physo135523.1;Parent=Physo135523;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 32725 34392 . - . ID=Physo135524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390011;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 32725 34392 . - . ID=Physo135524;Parent=Physo135524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 32725 34392 . - 0 ID=Physo135524;Parent=Physo135524;rank=1 scaffold_39 . exon 32725 34392 . - . ID=Physo135524.1;Parent=Physo135524;constitutive=1;rank=1 scaffold_39 . repeat_region 40539 40552 . ? . description=dust scaffold_39 . biological_region 43202 43205 0.999 - . logic_name=eponine scaffold_39 . biological_region 46813 46816 0.999 + . logic_name=eponine scaffold_39 . repeat_region 47410 47417 . ? . description=dust scaffold_39 . biological_region 47556 47563 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 42543 44264 . + . ID=Physo135525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390012;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 42543 44264 . + . ID=Physo135525;Parent=Physo135525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 42543 44264 . + 0 ID=Physo135525;Parent=Physo135525;rank=1 scaffold_39 . exon 42543 44264 . + . ID=Physo135525.1;Parent=Physo135525;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 44526 46869 . - . ID=Physo135526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390013;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 44526 46869 . - . ID=Physo135526;Parent=Physo135526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 44526 44591 . - 0 ID=Physo135526;Parent=Physo135526;rank=2 scaffold_39 . exon 44526 44591 . - . ID=Physo135526.2;Parent=Physo135526;constitutive=1;rank=2 scaffold_39 . CDS 44653 46869 . - 0 ID=Physo135526;Parent=Physo135526;rank=1 scaffold_39 . exon 44653 46869 . - . ID=Physo135526.1;Parent=Physo135526;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 47469 49184 . + . ID=Physo135527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390014;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 47469 49184 . + . ID=Physo135527;Parent=Physo135527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 47469 49184 . + 0 ID=Physo135527;Parent=Physo135527;rank=1 scaffold_39 . exon 47469 49184 . + . ID=Physo135527.1;Parent=Physo135527;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 50343 51788 . + . ID=Physo135528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390015;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 50343 51788 . + . ID=Physo135528;Parent=Physo135528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 50343 51788 . + 0 ID=Physo135528;Parent=Physo135528;rank=1 scaffold_39 . exon 50343 51788 . + . ID=Physo135528.1;Parent=Physo135528;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 52150 54147 . + . ID=Physo135529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390016;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 52150 54147 . + . ID=Physo135529;Parent=Physo135529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 52150 54147 . + 0 ID=Physo135529;Parent=Physo135529;rank=1 scaffold_39 . exon 52150 54147 . + . ID=Physo135529.1;Parent=Physo135529;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 54324 56145 . - . ID=Physo135530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390017;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 54324 56145 . - . ID=Physo135530;Parent=Physo135530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 54324 56145 . - . ID=Physo135530.1;Parent=Physo135530;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_39 . CDS 54511 56145 . - 0 ID=Physo135530;Parent=Physo135530;rank=1 scaffold_39 ensembl protein_coding_gene 58599 60542 . - . ID=Physo135531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390018;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 58599 60542 . - . ID=Physo135531;Parent=Physo135531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 58599 60542 . - . ID=Physo135531.1;Parent=Physo135531;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 58671 60416 . - 0 ID=Physo135531;Parent=Physo135531;rank=1 scaffold_39 . biological_region 60745 60753 0.999 + . logic_name=eponine scaffold_39 . biological_region 60851 60854 0.999 + . logic_name=eponine scaffold_39 . biological_region 61435 61441 0.999 + . logic_name=eponine scaffold_39 . repeat_region 63292 63323 . ? . description=dust scaffold_39 . repeat_region 63883 64022 . ? . description=trf scaffold_39 . repeat_region 63883 64065 . ? . description=trf scaffold_39 . repeat_region 63913 64005 . ? . description=dust scaffold_39 . repeat_region 66993 67007 . ? . description=dust scaffold_39 ensembl protein_coding_gene 68215 69615 . - . ID=Physo135532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390019;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 68215 69615 . - . ID=Physo135532;Parent=Physo135532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 68215 69615 . - 0 ID=Physo135532;Parent=Physo135532;rank=1 scaffold_39 . exon 68215 69615 . - . ID=Physo135532.1;Parent=Physo135532;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 77215 78402 . + . ID=Physo108886;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_390002;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 77215 78402 . + . ID=Physo108886;Parent=Physo108886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 77215 78402 . + . ID=Physo108886.1;Parent=Physo108886;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 77350 78402 . + 0 ID=Physo108886;Parent=Physo108886;rank=1 scaffold_39 ensembl protein_coding_gene 69996 71372 . - . ID=Physo135533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390020;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 69996 71372 . - . ID=Physo135533;Parent=Physo135533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 69996 71372 . - 0 ID=Physo135533;Parent=Physo135533;rank=1 scaffold_39 . exon 69996 71372 . - . ID=Physo135533.1;Parent=Physo135533;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 72184 72972 . - . ID=Physo135534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390021;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 72184 72972 . - . ID=Physo135534;Parent=Physo135534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 72184 72733 . - 0 ID=Physo135534;Parent=Physo135534;rank=2 scaffold_39 . exon 72184 72733 . - . ID=Physo135534.2;Parent=Physo135534;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 72803 72972 . - 0 ID=Physo135534;Parent=Physo135534;rank=1 scaffold_39 . exon 72803 72972 . - . ID=Physo135534.1;Parent=Physo135534;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 ensembl protein_coding_gene 73716 76061 . + . ID=Physo135535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390022;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 73716 76061 . + . ID=Physo135535;Parent=Physo135535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 73716 74535 . + 0 ID=Physo135535;Parent=Physo135535;rank=1 scaffold_39 . exon 73716 74535 . + . ID=Physo135535.1;Parent=Physo135535;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 74617 74886 . + 0 ID=Physo135535;Parent=Physo135535;rank=2 scaffold_39 . exon 74617 74886 . + . ID=Physo135535.2;Parent=Physo135535;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 75802 76061 . + 0 ID=Physo135535;Parent=Physo135535;rank=3 scaffold_39 . exon 75802 76061 . + . ID=Physo135535.3;Parent=Physo135535;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 ensembl protein_coding_gene 78670 80235 . + . ID=Physo135537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390024;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 78670 80235 . + . ID=Physo135537;Parent=Physo135537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 78670 78752 . + 0 ID=Physo135537;Parent=Physo135537;rank=1 scaffold_39 . exon 78670 78752 . + . ID=Physo135537.1;Parent=Physo135537;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 78825 80235 . + 0 ID=Physo135537;Parent=Physo135537;rank=2 scaffold_39 . exon 78825 80235 . + . ID=Physo135537.2;Parent=Physo135537;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . biological_region 79836 79837 0.999 + . logic_name=eponine scaffold_39 . biological_region 79856 79859 0.999 - . logic_name=eponine scaffold_39 . biological_region 79892 79898 0.999 - . logic_name=eponine scaffold_39 . biological_region 83979 83979 0.999 + . logic_name=eponine scaffold_39 . repeat_region 88059 88143 . ? . description=trf scaffold_39 . repeat_region 88072 88148 . ? . description=trf scaffold_39 . repeat_region 89234 89244 . ? . description=dust scaffold_39 ensembl protein_coding_gene 80331 81099 . - . ID=Physo135538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390025;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 80331 81099 . - . ID=Physo135538;Parent=Physo135538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 80331 80502 . - 0 ID=Physo135538;Parent=Physo135538;rank=3 scaffold_39 . exon 80331 80502 . - . ID=Physo135538.3;Parent=Physo135538;constitutive=1;ensembl_phase=2;rank=3 scaffold_39 . CDS 80550 80644 . - 0 ID=Physo135538;Parent=Physo135538;rank=2 scaffold_39 . exon 80550 80644 . - . ID=Physo135538.2;Parent=Physo135538;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_39 . CDS 80833 81099 . - 0 ID=Physo135538;Parent=Physo135538;rank=1 scaffold_39 . exon 80833 81099 . - . ID=Physo135538.1;Parent=Physo135538;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 82149 83339 . - . ID=Physo135539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390026;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 82149 83339 . - . ID=Physo135539;Parent=Physo135539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 82149 83339 . - 0 ID=Physo135539;Parent=Physo135539;rank=1 scaffold_39 . exon 82149 83339 . - . ID=Physo135539.1;Parent=Physo135539;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 90826 92126 . - . ID=Physo135540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390027;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 90826 92126 . - . ID=Physo135540;Parent=Physo135540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 90826 91443 . - . ID=Physo135540.2;Parent=Physo135540;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_39 . CDS 90904 91443 . - 0 ID=Physo135540;Parent=Physo135540;rank=2 scaffold_39 . CDS 91519 92091 . - 0 ID=Physo135540;Parent=Physo135540;rank=1 scaffold_39 . exon 91519 92126 . - . ID=Physo135540.1;Parent=Physo135540;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 ensembl protein_coding_gene 93297 94490 . + . ID=Physo135541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390028;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 93297 94490 . + . ID=Physo135541;Parent=Physo135541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 93297 94490 . + 0 ID=Physo135541;Parent=Physo135541;rank=1 scaffold_39 . exon 93297 94490 . + . ID=Physo135541.1;Parent=Physo135541;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 95198 96400 . + . ID=Physo135542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390029;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 95198 96400 . + . ID=Physo135542;Parent=Physo135542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 95198 96400 . + 0 ID=Physo135542;Parent=Physo135542;rank=1 scaffold_39 . exon 95198 96400 . + . ID=Physo135542.1;Parent=Physo135542;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 98571 102208 . + . ID=Physo135543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390030;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 98571 102208 . + . ID=Physo135543;Parent=Physo135543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 98571 98573 . + 0 ID=Physo135543;Parent=Physo135543;rank=1 scaffold_39 . exon 98571 98573 . + . ID=Physo135543.1;Parent=Physo135543;constitutive=1;rank=1 scaffold_39 . CDS 98653 98787 . + 0 ID=Physo135543;Parent=Physo135543;rank=2 scaffold_39 . exon 98653 98787 . + . ID=Physo135543.2;Parent=Physo135543;constitutive=1;rank=2 scaffold_39 . CDS 98873 99791 . + 0 ID=Physo135543;Parent=Physo135543;rank=3 scaffold_39 . exon 98873 99791 . + . ID=Physo135543.3;Parent=Physo135543;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_39 . CDS 99867 100526 . + 0 ID=Physo135543;Parent=Physo135543;rank=4 scaffold_39 . CDS 100884 100979 . + 0 ID=Physo135543;Parent=Physo135543;rank=5 scaffold_39 . CDS 101097 102208 . + 0 ID=Physo135543;Parent=Physo135543;rank=6 scaffold_39 . repeat_region 102345 102357 . ? . description=dust scaffold_39 . repeat_region 108616 108624 . ? . description=dust scaffold_39 . exon 99867 100526 . + . ID=Physo135543.4;Parent=Physo135543;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_39 . exon 100884 100979 . + . ID=Physo135543.5;Parent=Physo135543;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_39 . exon 101097 102208 . + . ID=Physo135543.6;Parent=Physo135543;constitutive=1;ensembl_phase=1;rank=6 scaffold_39 ensembl protein_coding_gene 103889 106970 . - . ID=Physo135544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390031;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 103889 106970 . - . ID=Physo135544;Parent=Physo135544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 103889 105490 . - 0 ID=Physo135544;Parent=Physo135544;rank=4 scaffold_39 . exon 103889 105490 . - . ID=Physo135544.4;Parent=Physo135544;constitutive=1;rank=4 scaffold_39 . CDS 105533 106071 . - 0 ID=Physo135544;Parent=Physo135544;rank=3 scaffold_39 . exon 105533 106071 . - . ID=Physo135544.3;Parent=Physo135544;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 106209 106338 . - 0 ID=Physo135544;Parent=Physo135544;rank=2 scaffold_39 . exon 106209 106338 . - . ID=Physo135544.2;Parent=Physo135544;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_39 . CDS 106380 106970 . - 0 ID=Physo135544;Parent=Physo135544;rank=1 scaffold_39 . exon 106380 106970 . - . ID=Physo135544.1;Parent=Physo135544;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 109012 109815 . + . ID=Physo135545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390032;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 109012 109815 . + . ID=Physo135545;Parent=Physo135545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 109012 109815 . + 0 ID=Physo135545;Parent=Physo135545;rank=1 scaffold_39 . exon 109012 109815 . + . ID=Physo135545.1;Parent=Physo135545;constitutive=1;rank=1 scaffold_39 . biological_region 109740 109745 0.999 - . logic_name=eponine scaffold_39 . repeat_region 114377 114454 . ? . description=trf scaffold_39 . biological_region 115709 115714 0.999 - . logic_name=eponine scaffold_39 . biological_region 115825 115826 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 110949 112181 . - . ID=Physo135546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390033;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 110949 112181 . - . ID=Physo135546;Parent=Physo135546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 110949 112181 . - 0 ID=Physo135546;Parent=Physo135546;rank=1 scaffold_39 . exon 110949 112181 . - . ID=Physo135546.1;Parent=Physo135546;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 115102 116331 . + . ID=Physo135547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390034;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 115102 116331 . + . ID=Physo135547;Parent=Physo135547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 115102 116331 . + 0 ID=Physo135547;Parent=Physo135547;rank=1 scaffold_39 . exon 115102 116331 . + . ID=Physo135547.1;Parent=Physo135547;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 117889 119054 . + . ID=Physo135548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390035;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 117889 119054 . + . ID=Physo135548;Parent=Physo135548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 117889 118280 . + 0 ID=Physo135548;Parent=Physo135548;rank=1 scaffold_39 . exon 117889 118280 . + . ID=Physo135548.1;Parent=Physo135548;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 118369 118897 . + 0 ID=Physo135548;Parent=Physo135548;rank=2 scaffold_39 . exon 118369 118897 . + . ID=Physo135548.2;Parent=Physo135548;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 118947 119054 . + 0 ID=Physo135548;Parent=Physo135548;rank=3 scaffold_39 . exon 118947 119054 . + . ID=Physo135548.3;Parent=Physo135548;constitutive=1;rank=3 scaffold_39 . repeat_region 120926 120939 . ? . description=dust scaffold_39 . repeat_region 121044 121061 . ? . description=dust scaffold_39 . repeat_region 121855 121868 . ? . description=dust scaffold_39 ensembl protein_coding_gene 122822 123975 . + . ID=Physo135549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390036;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 122822 123975 . + . ID=Physo135549;Parent=Physo135549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 122822 123521 . + 0 ID=Physo135549;Parent=Physo135549;rank=1 scaffold_39 . exon 122822 123521 . + . ID=Physo135549.1;Parent=Physo135549;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 123653 123975 . + 0 ID=Physo135549;Parent=Physo135549;rank=2 scaffold_39 . exon 123653 123975 . + . ID=Physo135549.2;Parent=Physo135549;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 ensembl protein_coding_gene 124187 125386 . - . ID=Physo135550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390037;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 124187 125386 . - . ID=Physo135550;Parent=Physo135550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 124187 125386 . - 0 ID=Physo135550;Parent=Physo135550;rank=1 scaffold_39 . exon 124187 125386 . - . ID=Physo135550.1;Parent=Physo135550;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 126974 128197 . - . ID=Physo135551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390038;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 126974 128197 . - . ID=Physo135551;Parent=Physo135551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 126974 128197 . - 0 ID=Physo135551;Parent=Physo135551;rank=1 scaffold_39 . exon 126974 128197 . - . ID=Physo135551.1;Parent=Physo135551;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 128607 130853 . - . ID=Physo135552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390039;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 128607 130853 . - . ID=Physo135552;Parent=Physo135552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 128607 130853 . - 0 ID=Physo135552;Parent=Physo135552;rank=1 scaffold_39 . exon 128607 130853 . - . ID=Physo135552.1;Parent=Physo135552;constitutive=1;rank=1 scaffold_39 . biological_region 130299 130302 0.999 - . logic_name=eponine scaffold_39 . biological_region 130323 130324 0.999 - . logic_name=eponine scaffold_39 . biological_region 130433 130437 0.999 - . logic_name=eponine scaffold_39 . biological_region 130529 130533 0.999 - . logic_name=eponine scaffold_39 . biological_region 130722 130724 0.999 + . logic_name=eponine scaffold_39 . biological_region 130736 130744 0.999 + . logic_name=eponine scaffold_39 . biological_region 130758 130760 0.999 + . logic_name=eponine scaffold_39 . biological_region 130786 130788 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 133559 134372 . + . ID=Physo108887;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_390003;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 133559 134372 . + . ID=Physo108887;Parent=Physo108887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 133559 134372 . + . ID=Physo108887.1;Parent=Physo108887;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 133590 134372 . + 0 ID=Physo108887;Parent=Physo108887;rank=1 scaffold_39 ensembl protein_coding_gene 131260 132342 . + . ID=Physo135553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390040;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 131260 132342 . + . ID=Physo135553;Parent=Physo135553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 131260 132342 . + 0 ID=Physo135553;Parent=Physo135553;rank=1 scaffold_39 . exon 131260 132342 . + . ID=Physo135553.1;Parent=Physo135553;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 135219 136295 . + . ID=Physo135555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390042;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 135219 136295 . + . ID=Physo135555;Parent=Physo135555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 135219 136295 . + 0 ID=Physo135555;Parent=Physo135555;rank=1 scaffold_39 . exon 135219 136295 . + . ID=Physo135555.1;Parent=Physo135555;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 137213 138415 . + . ID=Physo135556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390043;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 137213 138415 . + . ID=Physo135556;Parent=Physo135556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 137213 138415 . + 0 ID=Physo135556;Parent=Physo135556;rank=1 scaffold_39 . exon 137213 138415 . + . ID=Physo135556.1;Parent=Physo135556;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 139091 140287 . + . ID=Physo135557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390044;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 139091 140287 . + . ID=Physo135557;Parent=Physo135557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 139091 140287 . + 0 ID=Physo135557;Parent=Physo135557;rank=1 scaffold_39 . exon 139091 140287 . + . ID=Physo135557.1;Parent=Physo135557;constitutive=1;rank=1 scaffold_39 . repeat_region 144229 144259 . ? . description=dust scaffold_39 . repeat_region 144229 144260 . ? . description=trf scaffold_39 ensembl protein_coding_gene 145971 147766 . + . ID=Physo108888;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_390004;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 145971 147766 . + . ID=Physo108888;Parent=Physo108888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 145971 145982 . + . ID=Physo108888.1;Parent=Physo108888;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_39 . exon 146136 147766 . + . ID=Physo108888.2;Parent=Physo108888;constitutive=1;ensembl_phase=-1;rank=2 scaffold_39 . CDS 146189 147766 . + 0 ID=Physo108888;Parent=Physo108888;rank=1 scaffold_39 ensembl protein_coding_gene 141212 142375 . + . ID=Physo135558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390045;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 141212 142375 . + . ID=Physo135558;Parent=Physo135558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 141212 142375 . + 0 ID=Physo135558;Parent=Physo135558;rank=1 scaffold_39 . exon 141212 142375 . + . ID=Physo135558.1;Parent=Physo135558;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 142443 143582 . - . ID=Physo135559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390046;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 142443 143582 . - . ID=Physo135559;Parent=Physo135559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 142443 142499 . - 0 ID=Physo135559;Parent=Physo135559;rank=4 scaffold_39 . exon 142443 142499 . - . ID=Physo135559.4;Parent=Physo135559;constitutive=1;rank=4 scaffold_39 . CDS 142540 142914 . - 0 ID=Physo135559;Parent=Physo135559;rank=3 scaffold_39 . exon 142540 142914 . - . ID=Physo135559.3;Parent=Physo135559;constitutive=1;rank=3 scaffold_39 . CDS 142954 143129 . - 0 ID=Physo135559;Parent=Physo135559;rank=2 scaffold_39 . exon 142954 143129 . - . ID=Physo135559.2;Parent=Physo135559;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 143402 143582 . - 0 ID=Physo135559;Parent=Physo135559;rank=1 scaffold_39 . exon 143402 143582 . - . ID=Physo135559.1;Parent=Physo135559;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 144331 145319 . + . ID=Physo135560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390047;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 144331 145319 . + . ID=Physo135560;Parent=Physo135560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 144331 145248 . + 0 ID=Physo135560;Parent=Physo135560;rank=1 scaffold_39 . exon 144331 145248 . + . ID=Physo135560.1;Parent=Physo135560;constitutive=1;rank=1 scaffold_39 . CDS 145317 145319 . + 0 ID=Physo135560;Parent=Physo135560;rank=2 scaffold_39 . exon 145317 145319 . + . ID=Physo135560.2;Parent=Physo135560;constitutive=1;rank=2 scaffold_39 ensembl protein_coding_gene 147892 148995 . - . ID=Physo135562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390049;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 147892 148995 . - . ID=Physo135562;Parent=Physo135562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 147892 148830 . - 0 ID=Physo135562;Parent=Physo135562;rank=1 scaffold_39 . exon 147892 148995 . - . ID=Physo135562.1;Parent=Physo135562;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 . biological_region 158406 158409 0.999 + . logic_name=eponine scaffold_39 . repeat_region 159057 159175 . + . description=(CGATA)n scaffold_39 ensembl protein_coding_gene 150074 151345 . + . ID=Physo135563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390050;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 150074 151345 . + . ID=Physo135563;Parent=Physo135563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 150074 150395 . + 0 ID=Physo135563;Parent=Physo135563;rank=1 scaffold_39 . exon 150074 150395 . + . ID=Physo135563.1;Parent=Physo135563;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 150546 150721 . + 0 ID=Physo135563;Parent=Physo135563;rank=2 scaffold_39 . exon 150546 150721 . + . ID=Physo135563.2;Parent=Physo135563;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 150761 151345 . + 0 ID=Physo135563;Parent=Physo135563;rank=3 scaffold_39 . exon 150761 151345 . + . ID=Physo135563.3;Parent=Physo135563;constitutive=1;rank=3 scaffold_39 ensembl protein_coding_gene 152522 156363 . + . ID=Physo135565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390052;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 152522 156363 . + . ID=Physo135565;Parent=Physo135565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 152522 152844 . + 0 ID=Physo135565;Parent=Physo135565;rank=1 scaffold_39 . exon 152522 152844 . + . ID=Physo135565.1;Parent=Physo135565;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 155766 156363 . + 0 ID=Physo135565;Parent=Physo135565;rank=2 scaffold_39 . exon 155766 156363 . + . ID=Physo135565.2;Parent=Physo135565;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . repeat_region 161634 161688 . ? . description=trf scaffold_39 . repeat_region 167517 167533 . ? . description=dust scaffold_39 . repeat_region 168048 168327 . + . description=GypsyPi-1c_I-int scaffold_39 . biological_region 170384 170388 0.999 + . logic_name=eponine scaffold_39 . biological_region 176501 176507 0.999 + . logic_name=eponine scaffold_39 . biological_region 176675 176677 0.999 + . logic_name=eponine scaffold_39 . biological_region 176700 176704 0.999 - . logic_name=eponine scaffold_39 . biological_region 176740 176740 0.999 - . logic_name=eponine scaffold_39 . biological_region 176756 176757 0.999 + . logic_name=eponine scaffold_39 . biological_region 178287 178288 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 170336 170868 . + . ID=Physo135567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390054;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 170336 170868 . + . ID=Physo135567;Parent=Physo135567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 170336 170698 . + 0 ID=Physo135567;Parent=Physo135567;rank=1 scaffold_39 . exon 170336 170698 . + . ID=Physo135567.1;Parent=Physo135567;constitutive=1;rank=1 scaffold_39 . CDS 170770 170868 . + 0 ID=Physo135567;Parent=Physo135567;rank=2 scaffold_39 . exon 170770 170868 . + . ID=Physo135567.2;Parent=Physo135567;constitutive=1;rank=2 scaffold_39 ensembl protein_coding_gene 178667 179856 . + . ID=Physo135568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390055;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 178667 179856 . + . ID=Physo135568;Parent=Physo135568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 178667 179017 . + 0 ID=Physo135568;Parent=Physo135568;rank=1 scaffold_39 . exon 178667 179017 . + . ID=Physo135568.1;Parent=Physo135568;constitutive=1;rank=1 scaffold_39 . CDS 179087 179143 . + 0 ID=Physo135568;Parent=Physo135568;rank=2 scaffold_39 . exon 179087 179143 . + . ID=Physo135568.2;Parent=Physo135568;constitutive=1;rank=2 scaffold_39 . CDS 179227 179502 . + 0 ID=Physo135568;Parent=Physo135568;rank=3 scaffold_39 . exon 179227 179502 . + . ID=Physo135568.3;Parent=Physo135568;constitutive=1;rank=3 scaffold_39 . CDS 179701 179856 . + 0 ID=Physo135568;Parent=Physo135568;rank=4 scaffold_39 . repeat_region 179680 179797 . ? . description=trf scaffold_39 . repeat_region 185881 185893 . ? . description=dust scaffold_39 . repeat_region 189317 189333 . ? . description=dust scaffold_39 . exon 179701 179856 . + . ID=Physo135568.4;Parent=Physo135568;constitutive=1;rank=4 scaffold_39 ensembl protein_coding_gene 187408 188572 . + . ID=Physo135569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390056;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 187408 188572 . + . ID=Physo135569;Parent=Physo135569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 187408 187597 . + 0 ID=Physo135569;Parent=Physo135569;rank=1 scaffold_39 . exon 187408 187597 . + . ID=Physo135569.1;Parent=Physo135569;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 187890 188169 . + 0 ID=Physo135569;Parent=Physo135569;rank=2 scaffold_39 . exon 187890 188169 . + . ID=Physo135569.2;Parent=Physo135569;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_39 . CDS 188436 188488 . + 0 ID=Physo135569;Parent=Physo135569;rank=3 scaffold_39 . exon 188436 188488 . + . ID=Physo135569.3;Parent=Physo135569;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_39 . CDS 188526 188572 . + 0 ID=Physo135569;Parent=Physo135569;rank=4 scaffold_39 . exon 188526 188572 . + . ID=Physo135569.4;Parent=Physo135569;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 . biological_region 190697 190700 0.999 + . logic_name=eponine scaffold_39 . biological_region 191064 191067 0.999 - . logic_name=eponine scaffold_39 . biological_region 194421 194425 0.999 - . logic_name=eponine scaffold_39 . biological_region 199476 199478 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 194180 195942 . - . ID=Physo135570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390057;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 194180 195942 . - . ID=Physo135570;Parent=Physo135570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 194180 194551 . - 0 ID=Physo135570;Parent=Physo135570;rank=4 scaffold_39 . exon 194180 194551 . - . ID=Physo135570.4;Parent=Physo135570;constitutive=1;rank=4 scaffold_39 . CDS 194603 194969 . - 0 ID=Physo135570;Parent=Physo135570;rank=3 scaffold_39 . exon 194603 194969 . - . ID=Physo135570.3;Parent=Physo135570;constitutive=1;ensembl_phase=2;rank=3 scaffold_39 . CDS 194998 195619 . - 0 ID=Physo135570;Parent=Physo135570;rank=2 scaffold_39 . exon 194998 195619 . - . ID=Physo135570.2;Parent=Physo135570;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_39 . CDS 195645 195942 . - 0 ID=Physo135570;Parent=Physo135570;rank=1 scaffold_39 . exon 195645 195942 . - . ID=Physo135570.1;Parent=Physo135570;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 198825 199786 . + . ID=Physo135571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390058;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 198825 199786 . + . ID=Physo135571;Parent=Physo135571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 198825 198870 . + 0 ID=Physo135571;Parent=Physo135571;rank=1 scaffold_39 . exon 198825 198870 . + . ID=Physo135571.1;Parent=Physo135571;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 198945 199786 . + 0 ID=Physo135571;Parent=Physo135571;rank=2 scaffold_39 . exon 198945 199786 . + . ID=Physo135571.2;Parent=Physo135571;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 ensembl protein_coding_gene 200616 201761 . + . ID=Physo135572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390059;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 200616 201761 . + . ID=Physo135572;Parent=Physo135572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 200616 200765 . + 0 ID=Physo135572;Parent=Physo135572;rank=1 scaffold_39 . exon 200616 200765 . + . ID=Physo135572.1;Parent=Physo135572;constitutive=1;rank=1 scaffold_39 . CDS 200792 201099 . + 0 ID=Physo135572;Parent=Physo135572;rank=2 scaffold_39 . exon 200792 201099 . + . ID=Physo135572.2;Parent=Physo135572;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_39 . CDS 201128 201150 . + 0 ID=Physo135572;Parent=Physo135572;rank=3 scaffold_39 . exon 201128 201150 . + . ID=Physo135572.3;Parent=Physo135572;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_39 . CDS 201196 201761 . + 0 ID=Physo135572;Parent=Physo135572;rank=4 scaffold_39 . exon 201196 201761 . + . ID=Physo135572.4;Parent=Physo135572;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 ensembl protein_coding_gene 202161 203349 . + . ID=Physo135573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390060;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 202161 203349 . + . ID=Physo135573;Parent=Physo135573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 202161 203349 . + . ID=Physo135573.1;Parent=Physo135573;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 202566 203030 . + 0 ID=Physo135573;Parent=Physo135573;rank=1 scaffold_39 ensembl protein_coding_gene 204666 205929 . + . ID=Physo135574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390061;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 204666 205929 . + . ID=Physo135574;Parent=Physo135574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 204666 204824 . + 0 ID=Physo135574;Parent=Physo135574;rank=1 scaffold_39 . exon 204666 204824 . + . ID=Physo135574.1;Parent=Physo135574;constitutive=1;rank=1 scaffold_39 . CDS 204845 205011 . + 0 ID=Physo135574;Parent=Physo135574;rank=2 scaffold_39 . exon 204845 205011 . + . ID=Physo135574.2;Parent=Physo135574;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_39 . CDS 205206 205929 . + 0 ID=Physo135574;Parent=Physo135574;rank=3 scaffold_39 . exon 205206 205929 . + . ID=Physo135574.3;Parent=Physo135574;constitutive=1;ensembl_phase=2;rank=3 scaffold_39 ensembl protein_coding_gene 206559 208395 . - . ID=Physo135575;biotype=protein_coding;description=PsAvh175.2 [Source:UniProtKB/TrEMBL%3BAcc:E0W542];external_name=estExt_fgenesh1_pg.C_390062;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 206559 208395 . - . ID=Physo135575;Parent=Physo135575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 206559 206753 . - 0 ID=Physo135575;Parent=Physo135575;rank=4 scaffold_39 . exon 206559 206753 . - . ID=Physo135575.4;Parent=Physo135575;constitutive=1;rank=4 scaffold_39 . CDS 206844 207051 . - 0 ID=Physo135575;Parent=Physo135575;rank=3 scaffold_39 . exon 206844 207051 . - . ID=Physo135575.3;Parent=Physo135575;constitutive=1;ensembl_phase=2;rank=3 scaffold_39 . CDS 207418 207843 . - 0 ID=Physo135575;Parent=Physo135575;rank=2 scaffold_39 . exon 207418 207843 . - . ID=Physo135575.2;Parent=Physo135575;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_39 . CDS 207908 208395 . - 0 ID=Physo135575;Parent=Physo135575;rank=1 scaffold_39 . exon 207908 208395 . - . ID=Physo135575.1;Parent=Physo135575;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . repeat_region 212608 212710 . ? . description=trf scaffold_39 . repeat_region 212608 212713 . ? . description=trf scaffold_39 . repeat_region 217003 217031 . ? . description=trf scaffold_39 ensembl protein_coding_gene 215007 216209 . - . ID=Physo135576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390063;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 215007 216209 . - . ID=Physo135576;Parent=Physo135576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 215007 216209 . - 0 ID=Physo135576;Parent=Physo135576;rank=1 scaffold_39 . exon 215007 216209 . - . ID=Physo135576.1;Parent=Physo135576;constitutive=1;rank=1 scaffold_39 . repeat_region 222315 222323 . ? . description=dust scaffold_39 . repeat_region 225577 225584 . ? . description=dust scaffold_39 ensembl protein_coding_gene 222480 223778 . - . ID=Physo135577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390064;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 222480 223778 . - . ID=Physo135577;Parent=Physo135577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 222480 223778 . - 0 ID=Physo135577;Parent=Physo135577;rank=1 scaffold_39 . exon 222480 223778 . - . ID=Physo135577.1;Parent=Physo135577;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 224284 225510 . + . ID=Physo135578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390065;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 224284 225510 . + . ID=Physo135578;Parent=Physo135578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 224284 224674 . + 0 ID=Physo135578;Parent=Physo135578;rank=1 scaffold_39 . exon 224284 224674 . + . ID=Physo135578.1;Parent=Physo135578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 224704 224778 . + 0 ID=Physo135578;Parent=Physo135578;rank=2 scaffold_39 . exon 224704 224778 . + . ID=Physo135578.2;Parent=Physo135578;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 224883 225433 . + 0 ID=Physo135578;Parent=Physo135578;rank=3 scaffold_39 . exon 224883 225433 . + . ID=Physo135578.3;Parent=Physo135578;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 225463 225510 . + 0 ID=Physo135578;Parent=Physo135578;rank=4 scaffold_39 . exon 225463 225510 . + . ID=Physo135578.4;Parent=Physo135578;constitutive=1;rank=4 scaffold_39 ensembl protein_coding_gene 233343 234524 . - . ID=Physo135579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390066;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 233343 234524 . - . ID=Physo135579;Parent=Physo135579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 233343 234524 . - 0 ID=Physo135579;Parent=Physo135579;rank=1 scaffold_39 . exon 233343 234524 . - . ID=Physo135579.1;Parent=Physo135579;constitutive=1;rank=1 scaffold_39 . repeat_region 242323 242871 . + . description=GypsyPi-1c_I-int scaffold_39 . biological_region 242988 242989 0.999 - . logic_name=eponine scaffold_39 . biological_region 243045 243045 0.999 + . logic_name=eponine scaffold_39 . repeat_region 243470 245681 . + . description=GypsyPi-1c_I-int scaffold_39 . repeat_region 246631 246765 . - . description=GypsyPi-1c_I-int scaffold_39 . biological_region 246822 246824 0.999 - . logic_name=eponine scaffold_39 . biological_region 247233 247237 0.999 - . logic_name=eponine scaffold_39 . repeat_region 247277 247799 . - . description=GypsyPi-1c_I-int scaffold_39 . repeat_region 249224 249272 . ? . description=trf scaffold_39 ensembl protein_coding_gene 241350 247310 . + . ID=Physo135580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390067;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 241350 247310 . + . ID=Physo135580;Parent=Physo135580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 241350 241653 . + 0 ID=Physo135580;Parent=Physo135580;rank=1 scaffold_39 . exon 241350 241653 . + . ID=Physo135580.1;Parent=Physo135580;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 241717 243125 . + 0 ID=Physo135580;Parent=Physo135580;rank=2 scaffold_39 . exon 241717 243125 . + . ID=Physo135580.2;Parent=Physo135580;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 243164 244014 . + 0 ID=Physo135580;Parent=Physo135580;rank=3 scaffold_39 . exon 243164 244014 . + . ID=Physo135580.3;Parent=Physo135580;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_39 . CDS 244246 244329 . + 0 ID=Physo135580;Parent=Physo135580;rank=4 scaffold_39 . exon 244246 244329 . + . ID=Physo135580.4;Parent=Physo135580;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_39 . CDS 244365 245223 . + 0 ID=Physo135580;Parent=Physo135580;rank=5 scaffold_39 . exon 244365 245223 . + . ID=Physo135580.5;Parent=Physo135580;constitutive=1;ensembl_phase=2;rank=5 scaffold_39 . CDS 245251 245700 . + 0 ID=Physo135580;Parent=Physo135580;rank=6 scaffold_39 . exon 245251 245700 . + . ID=Physo135580.6;Parent=Physo135580;constitutive=1;rank=6 scaffold_39 . CDS 246112 246456 . + 0 ID=Physo135580;Parent=Physo135580;rank=7 scaffold_39 . exon 246112 246456 . + . ID=Physo135580.7;Parent=Physo135580;constitutive=1;rank=7 scaffold_39 . CDS 247011 247310 . + 0 ID=Physo135580;Parent=Physo135580;rank=8 scaffold_39 . exon 247011 247310 . + . ID=Physo135580.8;Parent=Physo135580;constitutive=1;rank=8 scaffold_39 . repeat_region 251260 251270 . ? . description=dust scaffold_39 . repeat_region 253241 253249 . ? . description=dust scaffold_39 . repeat_region 253888 253905 . ? . description=dust scaffold_39 ensembl protein_coding_gene 257135 257860 . + . ID=Physo135581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390068;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 257135 257860 . + . ID=Physo135581;Parent=Physo135581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 257135 257470 . + 0 ID=Physo135581;Parent=Physo135581;rank=1 scaffold_39 . exon 257135 257470 . + . ID=Physo135581.1;Parent=Physo135581;constitutive=1;rank=1 scaffold_39 . CDS 257493 257752 . + 0 ID=Physo135581;Parent=Physo135581;rank=2 scaffold_39 . exon 257493 257752 . + . ID=Physo135581.2;Parent=Physo135581;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_39 . CDS 257824 257860 . + 0 ID=Physo135581;Parent=Physo135581;rank=3 scaffold_39 . exon 257824 257860 . + . ID=Physo135581.3;Parent=Physo135581;constitutive=1;ensembl_phase=2;rank=3 scaffold_39 . repeat_region 261698 261723 . ? . description=trf scaffold_39 . biological_region 265142 265145 0.999 + . logic_name=eponine scaffold_39 . repeat_region 268097 268124 . ? . description=trf scaffold_39 ensembl protein_coding_gene 260210 261394 . - . ID=Physo135582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390069;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 260210 261394 . - . ID=Physo135582;Parent=Physo135582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 260210 261394 . - 0 ID=Physo135582;Parent=Physo135582;rank=1 scaffold_39 . exon 260210 261394 . - . ID=Physo135582.1;Parent=Physo135582;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 263650 265429 . + . ID=Physo135583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390070;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 263650 265429 . + . ID=Physo135583;Parent=Physo135583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 263650 263999 . + 0 ID=Physo135583;Parent=Physo135583;rank=1 scaffold_39 . exon 263650 263999 . + . ID=Physo135583.1;Parent=Physo135583;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 264075 264581 . + 0 ID=Physo135583;Parent=Physo135583;rank=2 scaffold_39 . exon 264075 264581 . + . ID=Physo135583.2;Parent=Physo135583;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_39 . CDS 264662 264954 . + 0 ID=Physo135583;Parent=Physo135583;rank=3 scaffold_39 . exon 264662 264954 . + . ID=Physo135583.3;Parent=Physo135583;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_39 . CDS 265026 265429 . + 0 ID=Physo135583;Parent=Physo135583;rank=4 scaffold_39 . exon 265026 265429 . + . ID=Physo135583.4;Parent=Physo135583;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 ensembl protein_coding_gene 266423 267269 . + . ID=Physo135584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390071;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 266423 267269 . + . ID=Physo135584;Parent=Physo135584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 266423 266706 . + 0 ID=Physo135584;Parent=Physo135584;rank=1 scaffold_39 . exon 266423 266706 . + . ID=Physo135584.1;Parent=Physo135584;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 266750 266754 . + 0 ID=Physo135584;Parent=Physo135584;rank=2 scaffold_39 . exon 266750 266754 . + . ID=Physo135584.2;Parent=Physo135584;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 266791 267269 . + 0 ID=Physo135584;Parent=Physo135584;rank=3 scaffold_39 . exon 266791 267269 . + . ID=Physo135584.3;Parent=Physo135584;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . repeat_region 273381 273388 . ? . description=dust scaffold_39 . repeat_region 275011 275024 . ? . description=dust scaffold_39 . repeat_region 275501 275510 . ? . description=dust scaffold_39 . repeat_region 275810 275872 . ? . description=dust scaffold_39 ensembl protein_coding_gene 269492 269914 . + . ID=Physo135585;biotype=protein_coding;description=PsAvh23 [Source:UniProtKB/TrEMBL%3BAcc:E0W544];external_name=estExt_fgenesh1_pg.C_390072;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 269492 269914 . + . ID=Physo135585;Parent=Physo135585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 269492 269914 . + 0 ID=Physo135585;Parent=Physo135585;rank=1 scaffold_39 . exon 269492 269914 . + . ID=Physo135585.1;Parent=Physo135585;constitutive=1;rank=1 scaffold_39 . biological_region 280180 280182 0.999 + . logic_name=eponine scaffold_39 . biological_region 280209 280212 0.999 - . logic_name=eponine scaffold_39 . biological_region 280308 280309 0.999 - . logic_name=eponine scaffold_39 . biological_region 285437 285441 0.999 + . logic_name=eponine scaffold_39 . biological_region 285527 285531 0.999 + . logic_name=eponine scaffold_39 . biological_region 285534 285542 0.999 - . logic_name=eponine scaffold_39 . biological_region 285996 285998 0.999 + . logic_name=eponine scaffold_39 . biological_region 286051 286051 0.999 - . logic_name=eponine scaffold_39 . biological_region 288469 288473 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 280076 281135 . + . ID=Physo135586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390073;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 280076 281135 . + . ID=Physo135586;Parent=Physo135586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 280076 281135 . + . ID=Physo135586.1;Parent=Physo135586;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 280110 281135 . + 0 ID=Physo135586;Parent=Physo135586;rank=1 scaffold_39 ensembl protein_coding_gene 282287 283981 . + . ID=Physo135587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390074;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 282287 283981 . + . ID=Physo135587;Parent=Physo135587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 282287 283981 . + 0 ID=Physo135587;Parent=Physo135587;rank=1 scaffold_39 . exon 282287 283981 . + . ID=Physo135587.1;Parent=Physo135587;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 284379 286112 . - . ID=Physo135588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390075;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 284379 286112 . - . ID=Physo135588;Parent=Physo135588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 284379 286112 . - . ID=Physo135588.1;Parent=Physo135588;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_39 . CDS 284403 286112 . - 0 ID=Physo135588;Parent=Physo135588;rank=1 scaffold_39 ensembl protein_coding_gene 287448 289047 . - . ID=Physo135589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390076;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 287448 289047 . - . ID=Physo135589;Parent=Physo135589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 287448 287934 . - 0 ID=Physo135589;Parent=Physo135589;rank=3 scaffold_39 . exon 287448 287934 . - . ID=Physo135589.3;Parent=Physo135589;constitutive=1;ensembl_phase=2;rank=3 scaffold_39 . CDS 287974 288283 . - 0 ID=Physo135589;Parent=Physo135589;rank=2 scaffold_39 . exon 287974 288283 . - . ID=Physo135589.2;Parent=Physo135589;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_39 . CDS 288408 289047 . - 0 ID=Physo135589;Parent=Physo135589;rank=1 scaffold_39 . exon 288408 289047 . - . ID=Physo135589.1;Parent=Physo135589;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . repeat_region 294296 294320 . ? . description=trf scaffold_39 . repeat_region 296043 296088 . ? . description=trf scaffold_39 . repeat_region 297291 297302 . ? . description=dust scaffold_39 . repeat_region 297738 297745 . ? . description=dust scaffold_39 ensembl snoRNA_gene 295107 295323 . - . ID=EPrPSOG00000000136;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_39 ensembl snoRNA 295107 295323 . - . ID=EPrPSOT00000000136;Parent=EPrPSOG00000000136;biotype=snoRNA;logic_name=ncrna_eg scaffold_39 . exon 295107 295323 . - . ID=EPrPSOE00000000136;Parent=EPrPSOT00000000136;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 290095 291801 . - . ID=Physo135590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390077;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 290095 291801 . - . ID=Physo135590;Parent=Physo135590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 290095 291801 . - 0 ID=Physo135590;Parent=Physo135590;rank=1 scaffold_39 . exon 290095 291801 . - . ID=Physo135590.1;Parent=Physo135590;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 294362 295157 . - . ID=Physo135591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390078;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 294362 295157 . - . ID=Physo135591;Parent=Physo135591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 294362 294378 . - 0 ID=Physo135591;Parent=Physo135591;rank=3 scaffold_39 . exon 294362 294378 . - . ID=Physo135591.3;Parent=Physo135591;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 294413 294993 . - 0 ID=Physo135591;Parent=Physo135591;rank=2 scaffold_39 . exon 294413 294993 . - . ID=Physo135591.2;Parent=Physo135591;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 295126 295157 . - 0 ID=Physo135591;Parent=Physo135591;rank=1 scaffold_39 . exon 295126 295157 . - . ID=Physo135591.1;Parent=Physo135591;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 ensembl protein_coding_gene 295511 297247 . - . ID=Physo135592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390079;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 295511 297247 . - . ID=Physo135592;Parent=Physo135592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 295511 297247 . - 0 ID=Physo135592;Parent=Physo135592;rank=1 scaffold_39 . exon 295511 297247 . - . ID=Physo135592.1;Parent=Physo135592;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 298562 300250 . - . ID=Physo135593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390080;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 298562 300250 . - . ID=Physo135593;Parent=Physo135593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 298562 300250 . - 0 ID=Physo135593;Parent=Physo135593;rank=1 scaffold_39 . exon 298562 300250 . - . ID=Physo135593.1;Parent=Physo135593;constitutive=1;rank=1 scaffold_39 . biological_region 305166 305167 0.999 + . logic_name=eponine scaffold_39 . biological_region 305254 305257 0.999 - . logic_name=eponine scaffold_39 . biological_region 307464 307468 0.999 + . logic_name=eponine scaffold_39 . biological_region 307503 307504 0.999 - . logic_name=eponine scaffold_39 . biological_region 308278 308284 0.999 - . logic_name=eponine scaffold_39 . biological_region 308739 308741 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 301399 302286 . - . ID=Physo135594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390081;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 301399 302286 . - . ID=Physo135594;Parent=Physo135594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 301399 301800 . - 0 ID=Physo135594;Parent=Physo135594;rank=3 scaffold_39 . exon 301399 301800 . - . ID=Physo135594.3;Parent=Physo135594;constitutive=1;rank=3 scaffold_39 . CDS 302004 302054 . - 0 ID=Physo135594;Parent=Physo135594;rank=2 scaffold_39 . exon 302004 302054 . - . ID=Physo135594.2;Parent=Physo135594;constitutive=1;rank=2 scaffold_39 . CDS 302116 302286 . - 0 ID=Physo135594;Parent=Physo135594;rank=1 scaffold_39 . exon 302116 302286 . - . ID=Physo135594.1;Parent=Physo135594;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 303658 305386 . - . ID=Physo135595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390082;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 303658 305386 . - . ID=Physo135595;Parent=Physo135595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 303658 305386 . - . ID=Physo135595.1;Parent=Physo135595;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_39 . CDS 303665 305386 . - 0 ID=Physo135595;Parent=Physo135595;rank=1 scaffold_39 ensembl protein_coding_gene 307146 308879 . - . ID=Physo135596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390083;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 307146 308879 . - . ID=Physo135596;Parent=Physo135596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 307146 308879 . - 0 ID=Physo135596;Parent=Physo135596;rank=1 scaffold_39 . exon 307146 308879 . - . ID=Physo135596.1;Parent=Physo135596;constitutive=1;rank=1 scaffold_39 . repeat_region 312765 312776 . ? . description=dust scaffold_39 ensembl protein_coding_gene 309953 311665 . - . ID=Physo135597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390084;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 309953 311665 . - . ID=Physo135597;Parent=Physo135597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 309953 311665 . - 0 ID=Physo135597;Parent=Physo135597;rank=1 scaffold_39 . exon 309953 311665 . - . ID=Physo135597.1;Parent=Physo135597;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 313760 314617 . - . ID=Physo135598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390085;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 313760 314617 . - . ID=Physo135598;Parent=Physo135598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 313760 314214 . - 0 ID=Physo135598;Parent=Physo135598;rank=2 scaffold_39 . exon 313760 314214 . - . ID=Physo135598.2;Parent=Physo135598;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 314287 314617 . - 0 ID=Physo135598;Parent=Physo135598;rank=1 scaffold_39 . exon 314287 314617 . - . ID=Physo135598.1;Parent=Physo135598;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 316657 317746 . - . ID=Physo135599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390086;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 316657 317746 . - . ID=Physo135599;Parent=Physo135599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 316657 317746 . - . ID=Physo135599.1;Parent=Physo135599;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_39 . CDS 316877 317746 . - 0 ID=Physo135599;Parent=Physo135599;rank=1 scaffold_39 ensembl protein_coding_gene 318506 320195 . - . ID=Physo135600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390087;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 318506 320195 . - . ID=Physo135600;Parent=Physo135600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 318506 320195 . - . ID=Physo135600.1;Parent=Physo135600;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_39 . CDS 318507 320195 . - 0 ID=Physo135600;Parent=Physo135600;rank=1 scaffold_39 . repeat_region 320891 320910 . ? . description=trf scaffold_39 ensembl snoRNA_gene 325238 325454 . - . ID=EPrPSOG00000000192;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_39 ensembl snoRNA 325238 325454 . - . ID=EPrPSOT00000000192;Parent=EPrPSOG00000000192;biotype=snoRNA;logic_name=ncrna_eg scaffold_39 . exon 325238 325454 . - . ID=EPrPSOE00000000192;Parent=EPrPSOT00000000192;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 322048 322683 . - . ID=Physo135601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390088;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 322048 322683 . - . ID=Physo135601;Parent=Physo135601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 322048 322683 . - 0 ID=Physo135601;Parent=Physo135601;rank=1 scaffold_39 . exon 322048 322683 . - . ID=Physo135601.1;Parent=Physo135601;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 324105 324428 . - . ID=Physo135602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390089;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 324105 324428 . - . ID=Physo135602;Parent=Physo135602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 324105 324428 . - 0 ID=Physo135602;Parent=Physo135602;rank=1 scaffold_39 . exon 324105 324428 . - . ID=Physo135602.1;Parent=Physo135602;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 325642 334403 . - . ID=Physo135603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390090;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 325642 334403 . - . ID=Physo135603;Parent=Physo135603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 325642 325780 . - 0 ID=Physo135603;Parent=Physo135603;rank=4 scaffold_39 . exon 325642 325780 . - . ID=Physo135603.4;Parent=Physo135603;constitutive=1;ensembl_phase=2;rank=4 scaffold_39 . CDS 325842 327529 . - 0 ID=Physo135603;Parent=Physo135603;rank=3 scaffold_39 . exon 325842 327529 . - . ID=Physo135603.3;Parent=Physo135603;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_39 . CDS 328126 328227 . - 0 ID=Physo135603;Parent=Physo135603;rank=2 scaffold_39 . exon 328126 328227 . - . ID=Physo135603.2;Parent=Physo135603;constitutive=1;rank=2 scaffold_39 . CDS 328311 334403 . - 0 ID=Physo135603;Parent=Physo135603;rank=1 scaffold_39 . exon 328311 334403 . - . ID=Physo135603.1;Parent=Physo135603;constitutive=1;rank=1 scaffold_39 . biological_region 330916 330921 0.999 + . logic_name=eponine scaffold_39 . biological_region 330979 330983 0.999 - . logic_name=eponine scaffold_39 . biological_region 334037 334043 0.999 + . logic_name=eponine scaffold_39 . biological_region 334394 334394 0.999 - . logic_name=eponine scaffold_39 . biological_region 334472 334482 0.999 + . logic_name=eponine scaffold_39 . biological_region 334511 334517 0.999 - . logic_name=eponine scaffold_39 . biological_region 334607 334608 0.999 - . logic_name=eponine scaffold_39 . biological_region 336179 336186 0.999 - . logic_name=eponine scaffold_39 ensembl snoRNA_gene 338474 338697 . + . ID=EPrPSOG00000000252;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_39 ensembl snoRNA 338474 338697 . + . ID=EPrPSOT00000000252;Parent=EPrPSOG00000000252;biotype=snoRNA;logic_name=ncrna_eg scaffold_39 . exon 338474 338697 . + . ID=EPrPSOE00000000252;Parent=EPrPSOT00000000252;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 ensembl protein_coding_gene 336562 338286 . + . ID=Physo135604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390091;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 336562 338286 . + . ID=Physo135604;Parent=Physo135604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 336562 337285 . + 0 ID=Physo135604;Parent=Physo135604;rank=1 scaffold_39 . exon 336562 337285 . + . ID=Physo135604.1;Parent=Physo135604;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 337347 337613 . + 0 ID=Physo135604;Parent=Physo135604;rank=2 scaffold_39 . exon 337347 337613 . + . ID=Physo135604.2;Parent=Physo135604;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 337694 338286 . + 0 ID=Physo135604;Parent=Physo135604;rank=3 scaffold_39 . exon 337694 338286 . + . ID=Physo135604.3;Parent=Physo135604;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 ensembl protein_coding_gene 339101 341167 . + . ID=Physo135605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390092;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 339101 341167 . + . ID=Physo135605;Parent=Physo135605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 339101 341167 . + 0 ID=Physo135605;Parent=Physo135605;rank=1 scaffold_39 . exon 339101 341167 . + . ID=Physo135605.1;Parent=Physo135605;constitutive=1;rank=1 scaffold_39 . repeat_region 346219 346246 . ? . description=trf scaffold_39 . repeat_region 347857 347890 . ? . description=trf scaffold_39 ensembl protein_coding_gene 342770 343461 . - . ID=Physo135606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390093;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 342770 343461 . - . ID=Physo135606;Parent=Physo135606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 342770 343089 . - 0 ID=Physo135606;Parent=Physo135606;rank=3 scaffold_39 . exon 342770 343089 . - . ID=Physo135606.3;Parent=Physo135606;constitutive=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 343200 343247 . - 0 ID=Physo135606;Parent=Physo135606;rank=2 scaffold_39 . exon 343200 343247 . - . ID=Physo135606.2;Parent=Physo135606;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 343317 343461 . - 0 ID=Physo135606;Parent=Physo135606;rank=1 scaffold_39 . exon 343317 343461 . - . ID=Physo135606.1;Parent=Physo135606;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 344847 345542 . + . ID=Physo135607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390094;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 344847 345542 . + . ID=Physo135607;Parent=Physo135607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 344847 345542 . + 0 ID=Physo135607;Parent=Physo135607;rank=1 scaffold_39 . exon 344847 345542 . + . ID=Physo135607.1;Parent=Physo135607;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 348729 349433 . + . ID=Physo135608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390095;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 348729 349433 . + . ID=Physo135608;Parent=Physo135608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 348729 349433 . + 0 ID=Physo135608;Parent=Physo135608;rank=1 scaffold_39 . exon 348729 349433 . + . ID=Physo135608.1;Parent=Physo135608;constitutive=1;rank=1 scaffold_39 . biological_region 349128 349133 0.999 - . logic_name=eponine scaffold_39 . biological_region 349216 349222 0.999 - . logic_name=eponine scaffold_39 . biological_region 349221 349223 0.999 + . logic_name=eponine scaffold_39 . biological_region 349256 349257 0.999 + . logic_name=eponine scaffold_39 . biological_region 349497 349503 0.999 - . logic_name=eponine scaffold_39 . biological_region 349704 349707 0.999 - . logic_name=eponine scaffold_39 . biological_region 351783 351786 0.999 + . logic_name=eponine scaffold_39 . biological_region 352542 352543 0.999 - . logic_name=eponine scaffold_39 . repeat_region 356491 356540 . ? . description=dust scaffold_39 . repeat_region 357287 357336 . ? . description=dust scaffold_39 . repeat_region 358592 358641 . ? . description=dust scaffold_39 ensembl protein_coding_gene 351887 352713 . + . ID=Physo135609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390096;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 351887 352713 . + . ID=Physo135609;Parent=Physo135609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 351887 352142 . + 0 ID=Physo135609;Parent=Physo135609;rank=1 scaffold_39 . exon 351887 352142 . + . ID=Physo135609.1;Parent=Physo135609;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 352241 352286 . + 0 ID=Physo135609;Parent=Physo135609;rank=2 scaffold_39 . exon 352241 352286 . + . ID=Physo135609.2;Parent=Physo135609;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_39 . CDS 352362 352713 . + 0 ID=Physo135609;Parent=Physo135609;rank=3 scaffold_39 . exon 352362 352713 . + . ID=Physo135609.3;Parent=Physo135609;constitutive=1;ensembl_phase=2;rank=3 scaffold_39 ensembl protein_coding_gene 356427 358347 . + . ID=Physo135610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390097;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 356427 358347 . + . ID=Physo135610;Parent=Physo135610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 356427 356474 . + 0 ID=Physo135610;Parent=Physo135610;rank=1 scaffold_39 . exon 356427 356474 . + . ID=Physo135610.1;Parent=Physo135610;constitutive=1;rank=1 scaffold_39 . CDS 356580 357275 . + 0 ID=Physo135610;Parent=Physo135610;rank=2 scaffold_39 . exon 356580 357275 . + . ID=Physo135610.2;Parent=Physo135610;constitutive=1;rank=2 scaffold_39 . CDS 357475 358347 . + 0 ID=Physo135610;Parent=Physo135610;rank=3 scaffold_39 . exon 357475 358347 . + . ID=Physo135610.3;Parent=Physo135610;constitutive=1;rank=3 scaffold_39 . repeat_region 360952 361376 . ? . description=trf scaffold_39 . repeat_region 368344 368363 . ? . description=trf scaffold_39 ensembl protein_coding_gene 360802 363319 . + . ID=Physo135611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390098;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 360802 363319 . + . ID=Physo135611;Parent=Physo135611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 360802 363279 . + 0 ID=Physo135611;Parent=Physo135611;rank=1 scaffold_39 . exon 360802 363319 . + . ID=Physo135611.1;Parent=Physo135611;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_39 ensembl protein_coding_gene 363689 365049 . + . ID=Physo135612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390099;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 363689 365049 . + . ID=Physo135612;Parent=Physo135612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 363689 363899 . + 0 ID=Physo135612;Parent=Physo135612;rank=1 scaffold_39 . exon 363689 363899 . + . ID=Physo135612.1;Parent=Physo135612;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 363964 364118 . + 0 ID=Physo135612;Parent=Physo135612;rank=2 scaffold_39 . exon 363964 364118 . + . ID=Physo135612.2;Parent=Physo135612;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 364185 364884 . + 0 ID=Physo135612;Parent=Physo135612;rank=3 scaffold_39 . exon 364185 364884 . + . ID=Physo135612.3;Parent=Physo135612;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_39 . CDS 364958 365049 . + 0 ID=Physo135612;Parent=Physo135612;rank=4 scaffold_39 . exon 364958 365049 . + . ID=Physo135612.4;Parent=Physo135612;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 ensembl protein_coding_gene 366454 368221 . + . ID=Physo135613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390100;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 366454 368221 . + . ID=Physo135613;Parent=Physo135613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 366454 368220 . + 0 ID=Physo135613;Parent=Physo135613;rank=1 scaffold_39 . exon 366454 368221 . + . ID=Physo135613.1;Parent=Physo135613;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_39 ensembl protein_coding_gene 368332 369210 . - . ID=Physo135614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390101;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 368332 369210 . - . ID=Physo135614;Parent=Physo135614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 368332 369210 . - 0 ID=Physo135614;Parent=Physo135614;rank=1 scaffold_39 . exon 368332 369210 . - . ID=Physo135614.1;Parent=Physo135614;constitutive=1;rank=1 scaffold_39 . repeat_region 370922 370960 . ? . description=dust scaffold_39 . biological_region 372226 372227 0.999 + . logic_name=eponine scaffold_39 . repeat_region 372344 372373 . ? . description=dust scaffold_39 . biological_region 375952 375957 0.999 - . logic_name=eponine scaffold_39 . biological_region 376724 376726 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 369658 371034 . - . ID=Physo135615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390102;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 369658 371034 . - . ID=Physo135615;Parent=Physo135615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 369658 371034 . - 0 ID=Physo135615;Parent=Physo135615;rank=1 scaffold_39 . exon 369658 371034 . - . ID=Physo135615.1;Parent=Physo135615;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 375865 377220 . + . ID=Physo135616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390103;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 375865 377220 . + . ID=Physo135616;Parent=Physo135616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 375865 377220 . + 0 ID=Physo135616;Parent=Physo135616;rank=1 scaffold_39 . exon 375865 377220 . + . ID=Physo135616.1;Parent=Physo135616;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 378603 379958 . - . ID=Physo135617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390104;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 378603 379958 . - . ID=Physo135617;Parent=Physo135617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 378603 379958 . - 0 ID=Physo135617;Parent=Physo135617;rank=1 scaffold_39 . exon 378603 379958 . - . ID=Physo135617.1;Parent=Physo135617;constitutive=1;rank=1 scaffold_39 . repeat_region 381142 381166 . ? . description=trf scaffold_39 . repeat_region 383482 383773 . ? . description=trf scaffold_39 . repeat_region 384019 384057 . ? . description=trf scaffold_39 ensembl protein_coding_gene 383341 385428 . + . ID=Physo135618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390105;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 383341 385428 . + . ID=Physo135618;Parent=Physo135618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 383341 385428 . + 0 ID=Physo135618;Parent=Physo135618;rank=1 scaffold_39 . exon 383341 385428 . + . ID=Physo135618.1;Parent=Physo135618;constitutive=1;rank=1 scaffold_39 . biological_region 390521 390524 0.999 - . logic_name=eponine scaffold_39 . repeat_region 390809 390834 . ? . description=dust scaffold_39 . biological_region 392023 392027 0.999 + . logic_name=eponine scaffold_39 . repeat_region 393495 393509 . ? . description=dust scaffold_39 . biological_region 394431 394431 0.999 - . logic_name=eponine scaffold_39 . biological_region 394442 394444 0.999 + . logic_name=eponine scaffold_39 . biological_region 394498 394502 0.999 - . logic_name=eponine scaffold_39 . biological_region 395456 395458 0.999 - . logic_name=eponine scaffold_39 . biological_region 395481 395485 0.999 + . logic_name=eponine scaffold_39 . biological_region 395535 395539 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 390852 392480 . - . ID=Physo135619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390106;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 390852 392480 . - . ID=Physo135619;Parent=Physo135619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 390852 392480 . - 0 ID=Physo135619;Parent=Physo135619;rank=1 scaffold_39 . exon 390852 392480 . - . ID=Physo135619.1;Parent=Physo135619;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 396077 397943 . + . ID=Physo135620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390107;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 396077 397943 . + . ID=Physo135620;Parent=Physo135620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 396077 396819 . + 0 ID=Physo135620;Parent=Physo135620;rank=1 scaffold_39 . exon 396077 396819 . + . ID=Physo135620.1;Parent=Physo135620;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 396912 397338 . + 0 ID=Physo135620;Parent=Physo135620;rank=2 scaffold_39 . exon 396912 397338 . + . ID=Physo135620.2;Parent=Physo135620;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 397392 397805 . + 0 ID=Physo135620;Parent=Physo135620;rank=3 scaffold_39 . exon 397392 397943 . + . ID=Physo135620.3;Parent=Physo135620;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_39 . repeat_region 400607 400633 . ? . description=trf scaffold_39 . repeat_region 400925 400962 . ? . description=trf scaffold_39 . repeat_region 404671 404702 . ? . description=trf scaffold_39 ensembl protein_coding_gene 400275 400778 . + . ID=Physo135621;biotype=protein_coding;description=PsAvh109 [Source:UniProtKB/TrEMBL%3BAcc:E0W545];external_name=estExt_fgenesh1_pg.C_390108;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 400275 400778 . + . ID=Physo135621;Parent=Physo135621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 400275 400778 . + 0 ID=Physo135621;Parent=Physo135621;rank=1 scaffold_39 . exon 400275 400778 . + . ID=Physo135621.1;Parent=Physo135621;constitutive=1;rank=1 scaffold_39 . repeat_region 411665 411674 . ? . description=dust scaffold_39 . biological_region 412355 412357 0.999 + . logic_name=eponine scaffold_39 . repeat_region 413330 413339 . ? . description=dust scaffold_39 . repeat_region 414788 414796 . ? . description=dust scaffold_39 . repeat_region 420403 420563 . - . description=Gypsy-2-LTR_PI scaffold_39 . repeat_region 420567 427175 . - . description=Gypsy-2-I_PI-int scaffold_39 . repeat_region 427185 427299 . - . description=Gypsy-2-LTR_PI scaffold_39 ensembl protein_coding_gene 420760 421638 . + . ID=Physo135622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390109;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 420760 421638 . + . ID=Physo135622;Parent=Physo135622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 420760 421638 . + 0 ID=Physo135622;Parent=Physo135622;rank=1 scaffold_39 . exon 420760 421638 . + . ID=Physo135622.1;Parent=Physo135622;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 422260 427448 . - . ID=Physo135623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390110;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 422260 427448 . - . ID=Physo135623;Parent=Physo135623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 422260 424988 . - 0 ID=Physo135623;Parent=Physo135623;rank=6 scaffold_39 . exon 422260 424988 . - . ID=Physo135623.6;Parent=Physo135623;constitutive=1;ensembl_phase=1;rank=6 scaffold_39 . CDS 425059 425817 . - 0 ID=Physo135623;Parent=Physo135623;rank=5 scaffold_39 . exon 425059 425817 . - . ID=Physo135623.5;Parent=Physo135623;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_39 . CDS 425962 426192 . - 0 ID=Physo135623;Parent=Physo135623;rank=4 scaffold_39 . exon 425962 426192 . - . ID=Physo135623.4;Parent=Physo135623;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_39 . CDS 426321 427152 . - 0 ID=Physo135623;Parent=Physo135623;rank=3 scaffold_39 . exon 426321 427152 . - . ID=Physo135623.3;Parent=Physo135623;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_39 . CDS 427358 427361 . - 0 ID=Physo135623;Parent=Physo135623;rank=2 scaffold_39 . exon 427358 427361 . - . ID=Physo135623.2;Parent=Physo135623;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 427435 427448 . - 0 ID=Physo135623;Parent=Physo135623;rank=1 scaffold_39 . exon 427435 427448 . - . ID=Physo135623.1;Parent=Physo135623;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 ensembl protein_coding_gene 428566 430090 . + . ID=Physo135624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390111;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 428566 430090 . + . ID=Physo135624;Parent=Physo135624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 428566 429423 . + 0 ID=Physo135624;Parent=Physo135624;rank=1 scaffold_39 . exon 428566 429423 . + . ID=Physo135624.1;Parent=Physo135624;constitutive=1;rank=1 scaffold_39 . CDS 430001 430090 . + 0 ID=Physo135624;Parent=Physo135624;rank=2 scaffold_39 . biological_region 434363 434365 0.999 + . logic_name=eponine scaffold_39 . repeat_region 437051 437103 . ? . description=trf scaffold_39 . exon 430001 430090 . + . ID=Physo135624.2;Parent=Physo135624;constitutive=1;rank=2 scaffold_39 . repeat_region 443611 443624 . ? . description=dust scaffold_39 . repeat_region 443677 443684 . ? . description=dust scaffold_39 . repeat_region 444182 444303 . + . description=Gypsy-2-LTR_PI scaffold_39 . repeat_region 444319 444738 . + . description=Gypsy-2-I_PI-int scaffold_39 . repeat_region 444724 445340 . + . description=Gypsy-2-I_PI-int scaffold_39 . repeat_region 445674 445681 . ? . description=dust scaffold_39 ensembl protein_coding_gene 444957 445592 . + . ID=Physo135625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390112;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 444957 445592 . + . ID=Physo135625;Parent=Physo135625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 444957 445081 . + 0 ID=Physo135625;Parent=Physo135625;rank=1 scaffold_39 . exon 444957 445081 . + . ID=Physo135625.1;Parent=Physo135625;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . CDS 445262 445592 . + 0 ID=Physo135625;Parent=Physo135625;rank=2 scaffold_39 . exon 445262 445592 . + . ID=Physo135625.2;Parent=Physo135625;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 ensembl protein_coding_gene 446828 447214 . + . ID=Physo135626;biotype=protein_coding;description=PsAvh75 [Source:UniProtKB/TrEMBL%3BAcc:E0W546];external_name=estExt_fgenesh1_pg.C_390113;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 446828 447214 . + . ID=Physo135626;Parent=Physo135626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 446828 447214 . + 0 ID=Physo135626;Parent=Physo135626;rank=1 scaffold_39 . exon 446828 447214 . + . ID=Physo135626.1;Parent=Physo135626;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 448331 448738 . + . ID=Physo135627;biotype=protein_coding;description=PsAvh5 [Source:UniProtKB/TrEMBL%3BAcc:E0W547];external_name=estExt_fgenesh1_pg.C_390114;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 448331 448738 . + . ID=Physo135627;Parent=Physo135627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 448331 448738 . + 0 ID=Physo135627;Parent=Physo135627;rank=1 scaffold_39 . exon 448331 448738 . + . ID=Physo135627.1;Parent=Physo135627;constitutive=1;rank=1 scaffold_39 . biological_region 455208 455209 0.999 - . logic_name=eponine scaffold_39 . biological_region 455211 455211 0.999 + . logic_name=eponine scaffold_39 . biological_region 455240 455241 0.999 - . logic_name=eponine scaffold_39 . biological_region 455931 455934 0.999 - . logic_name=eponine scaffold_39 . biological_region 456013 456015 0.999 + . logic_name=eponine scaffold_39 . biological_region 456629 456632 0.999 - . logic_name=eponine scaffold_39 ensembl protein_coding_gene 450460 451486 . - . ID=Physo135628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390115;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 450460 451486 . - . ID=Physo135628;Parent=Physo135628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 450460 450807 . - 0 ID=Physo135628;Parent=Physo135628;rank=2 scaffold_39 . exon 450460 450807 . - . ID=Physo135628.2;Parent=Physo135628;constitutive=1;rank=2 scaffold_39 . CDS 451028 451486 . - 0 ID=Physo135628;Parent=Physo135628;rank=1 scaffold_39 . exon 451028 451486 . - . ID=Physo135628.1;Parent=Physo135628;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 455095 456241 . + . ID=Physo135629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390116;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 455095 456241 . + . ID=Physo135629;Parent=Physo135629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 455095 455148 . + 0 ID=Physo135629;Parent=Physo135629;rank=1 scaffold_39 . exon 455095 455148 . + . ID=Physo135629.1;Parent=Physo135629;constitutive=1;rank=1 scaffold_39 . CDS 455269 456111 . + 0 ID=Physo135629;Parent=Physo135629;rank=2 scaffold_39 . exon 455269 456111 . + . ID=Physo135629.2;Parent=Physo135629;constitutive=1;rank=2 scaffold_39 . CDS 456164 456241 . + 0 ID=Physo135629;Parent=Physo135629;rank=3 scaffold_39 . exon 456164 456241 . + . ID=Physo135629.3;Parent=Physo135629;constitutive=1;rank=3 scaffold_39 . repeat_region 461811 461818 . ? . description=dust scaffold_39 . repeat_region 465948 466228 . - . description=GypsyPi-1c_I-int scaffold_39 . repeat_region 466493 468061 . - . description=GypsyPi-1c_I-int scaffold_39 ensembl protein_coding_gene 459848 461565 . - . ID=Physo135630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390117;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 459848 461565 . - . ID=Physo135630;Parent=Physo135630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 459848 461026 . - 0 ID=Physo135630;Parent=Physo135630;rank=3 scaffold_39 . exon 459848 461026 . - . ID=Physo135630.3;Parent=Physo135630;constitutive=1;rank=3 scaffold_39 . CDS 461392 461458 . - 0 ID=Physo135630;Parent=Physo135630;rank=2 scaffold_39 . exon 461392 461458 . - . ID=Physo135630.2;Parent=Physo135630;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 461537 461565 . - 0 ID=Physo135630;Parent=Physo135630;rank=1 scaffold_39 . exon 461537 461565 . - . ID=Physo135630.1;Parent=Physo135630;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 ensembl protein_coding_gene 466186 468080 . - . ID=Physo135631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390118;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 466186 468080 . - . ID=Physo135631;Parent=Physo135631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 466186 466192 . - 0 ID=Physo135631;Parent=Physo135631;rank=3 scaffold_39 . exon 466186 466192 . - . ID=Physo135631.3;Parent=Physo135631;constitutive=1;ensembl_phase=2;rank=3 scaffold_39 . CDS 466233 467995 . - 0 ID=Physo135631;Parent=Physo135631;rank=2 scaffold_39 . exon 466233 467995 . - . ID=Physo135631.2;Parent=Physo135631;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_39 . CDS 468039 468080 . - 0 ID=Physo135631;Parent=Physo135631;rank=1 scaffold_39 . exon 468039 468080 . - . ID=Physo135631.1;Parent=Physo135631;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 468173 468912 . - . ID=Physo135632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390119;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 468173 468912 . - . ID=Physo135632;Parent=Physo135632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 468173 468592 . - 0 ID=Physo135632;Parent=Physo135632;rank=2 scaffold_39 . exon 468173 468592 . - . ID=Physo135632.2;Parent=Physo135632;constitutive=1;rank=2 scaffold_39 . CDS 468706 468912 . - 0 ID=Physo135632;Parent=Physo135632;rank=1 scaffold_39 . exon 468706 468912 . - . ID=Physo135632.1;Parent=Physo135632;constitutive=1;rank=1 scaffold_39 . biological_region 468834 468837 0.999 - . logic_name=eponine scaffold_39 . biological_region 468921 468923 0.999 - . logic_name=eponine scaffold_39 . biological_region 469000 469002 0.999 - . logic_name=eponine scaffold_39 . repeat_region 469020 469246 . ? . description=trf scaffold_39 . biological_region 469415 469418 0.999 - . logic_name=eponine scaffold_39 . repeat_region 472748 472776 . ? . description=trf scaffold_39 . biological_region 474134 474144 0.999 + . logic_name=eponine scaffold_39 . biological_region 474172 474176 0.999 - . logic_name=eponine scaffold_39 . biological_region 474205 474212 0.999 - . logic_name=eponine scaffold_39 . repeat_region 474866 474905 . ? . description=trf scaffold_39 . repeat_region 474866 474907 . ? . description=trf scaffold_39 ensembl protein_coding_gene 470318 470877 . - . ID=Physo135633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390120;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 470318 470877 . - . ID=Physo135633;Parent=Physo135633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 470318 470328 . - 0 ID=Physo135633;Parent=Physo135633;rank=2 scaffold_39 . exon 470318 470328 . - . ID=Physo135633.2;Parent=Physo135633;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 470376 470877 . - 0 ID=Physo135633;Parent=Physo135633;rank=1 scaffold_39 . exon 470376 470877 . - . ID=Physo135633.1;Parent=Physo135633;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 472000 472893 . + . ID=Physo135634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390121;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 472000 472893 . + . ID=Physo135634;Parent=Physo135634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 472000 472261 . + . ID=Physo135634.1;Parent=Physo135634;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 472124 472261 . + 0 ID=Physo135634;Parent=Physo135634;rank=1 scaffold_39 . CDS 472348 472413 . + 0 ID=Physo135634;Parent=Physo135634;rank=2 scaffold_39 . exon 472348 472413 . + . ID=Physo135634.2;Parent=Physo135634;constitutive=1;rank=2 scaffold_39 . CDS 472555 472777 . + 0 ID=Physo135634;Parent=Physo135634;rank=3 scaffold_39 . exon 472555 472777 . + . ID=Physo135634.3;Parent=Physo135634;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_39 . CDS 472880 472893 . + 0 ID=Physo135634;Parent=Physo135634;rank=4 scaffold_39 . exon 472880 472893 . + . ID=Physo135634.4;Parent=Physo135634;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 ensembl protein_coding_gene 474066 476306 . + . ID=Physo135635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390122;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 474066 476306 . + . ID=Physo135635;Parent=Physo135635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 474066 476306 . + 0 ID=Physo135635;Parent=Physo135635;rank=1 scaffold_39 . exon 474066 476306 . + . ID=Physo135635.1;Parent=Physo135635;constitutive=1;rank=1 scaffold_39 . repeat_region 480843 480850 . ? . description=dust scaffold_39 . repeat_region 481538 481548 . ? . description=dust scaffold_39 . repeat_region 485078 485136 . ? . description=dust scaffold_39 ensembl protein_coding_gene 479492 479932 . - . ID=Physo135636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390123;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 479492 479932 . - . ID=Physo135636;Parent=Physo135636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 479492 479932 . - 0 ID=Physo135636;Parent=Physo135636;rank=1 scaffold_39 . exon 479492 479932 . - . ID=Physo135636.1;Parent=Physo135636;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 481793 483209 . + . ID=Physo135637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390124;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 481793 483209 . + . ID=Physo135637;Parent=Physo135637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 481793 483023 . + . ID=Physo135637.1;Parent=Physo135637;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_39 . CDS 482143 483023 . + 0 ID=Physo135637;Parent=Physo135637;rank=1 scaffold_39 . CDS 483179 483209 . + 0 ID=Physo135637;Parent=Physo135637;rank=2 scaffold_39 . exon 483179 483209 . + . ID=Physo135637.2;Parent=Physo135637;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 ensembl protein_coding_gene 484571 485872 . - . ID=Physo135638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390125;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 484571 485872 . - . ID=Physo135638;Parent=Physo135638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 484571 485872 . - 0 ID=Physo135638;Parent=Physo135638;rank=1 scaffold_39 . exon 484571 485872 . - . ID=Physo135638.1;Parent=Physo135638;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 486597 487742 . - . ID=Physo135639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390126;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 486597 487742 . - . ID=Physo135639;Parent=Physo135639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 486597 487649 . - 0 ID=Physo135639;Parent=Physo135639;rank=1 scaffold_39 . exon 486597 487742 . - . ID=Physo135639.1;Parent=Physo135639;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 ensembl protein_coding_gene 488148 490404 . - . ID=Physo135640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390127;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 488148 490404 . - . ID=Physo135640;Parent=Physo135640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 488148 488857 . - 0 ID=Physo135640;Parent=Physo135640;rank=2 scaffold_39 . exon 488148 488857 . - . ID=Physo135640.2;Parent=Physo135640;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 489000 490404 . - 0 ID=Physo135640;Parent=Physo135640;rank=1 scaffold_39 . biological_region 495865 495869 0.999 - . logic_name=eponine scaffold_39 . biological_region 497283 497284 0.999 - . logic_name=eponine scaffold_39 . biological_region 497581 497582 0.999 - . logic_name=eponine scaffold_39 . exon 489000 490404 . - . ID=Physo135640.1;Parent=Physo135640;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 ensembl protein_coding_gene 491933 492439 . + . ID=Physo135641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390128;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 491933 492439 . + . ID=Physo135641;Parent=Physo135641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 491933 492439 . + . ID=Physo135641.1;Parent=Physo135641;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 491935 492438 . + 0 ID=Physo135641;Parent=Physo135641;rank=1 scaffold_39 ensembl protein_coding_gene 492839 494808 . + . ID=Physo135642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390129;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 492839 494808 . + . ID=Physo135642;Parent=Physo135642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 492839 494808 . + . ID=Physo135642.1;Parent=Physo135642;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 492871 494808 . + 0 ID=Physo135642;Parent=Physo135642;rank=1 scaffold_39 ensembl protein_coding_gene 494900 496327 . - . ID=Physo135643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390130;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 494900 496327 . - . ID=Physo135643;Parent=Physo135643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 494900 496327 . - 0 ID=Physo135643;Parent=Physo135643;rank=1 scaffold_39 . exon 494900 496327 . - . ID=Physo135643.1;Parent=Physo135643;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 496926 497955 . - . ID=Physo135644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390131;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 496926 497955 . - . ID=Physo135644;Parent=Physo135644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 496926 497704 . - 0 ID=Physo135644;Parent=Physo135644;rank=2 scaffold_39 . exon 496926 497704 . - . ID=Physo135644.2;Parent=Physo135644;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 497817 497955 . - 0 ID=Physo135644;Parent=Physo135644;rank=1 scaffold_39 . exon 497817 497955 . - . ID=Physo135644.1;Parent=Physo135644;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . repeat_region 500799 500806 . ? . description=dust scaffold_39 . repeat_region 505079 505086 . ? . description=dust scaffold_39 . repeat_region 508088 508163 . ? . description=trf scaffold_39 . repeat_region 508108 508127 . ? . description=trf scaffold_39 ensembl protein_coding_gene 499039 502226 . - . ID=Physo117111;biotype=protein_coding;external_name=estExt_Genewise1.C_390004;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 499039 502226 . - . ID=Physo117111;Parent=Physo117111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 499039 499308 . - 0 ID=Physo117111;Parent=Physo117111;rank=4 scaffold_39 . exon 499039 499308 . - . ID=Physo117111.4;Parent=Physo117111;constitutive=1;rank=4 scaffold_39 . CDS 499366 499752 . - 0 ID=Physo117111;Parent=Physo117111;rank=3 scaffold_39 . exon 499366 499752 . - . ID=Physo117111.3;Parent=Physo117111;constitutive=1;rank=3 scaffold_39 . CDS 500419 500642 . - 0 ID=Physo117111;Parent=Physo117111;rank=2 scaffold_39 . exon 500419 500642 . - . ID=Physo117111.2;Parent=Physo117111;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 501590 502088 . - 0 ID=Physo117111;Parent=Physo117111;rank=1 scaffold_39 . exon 501590 502226 . - . ID=Physo117111.1;Parent=Physo117111;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_39 ensembl protein_coding_gene 507349 508695 . + . ID=Physo135645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390132;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 507349 508695 . + . ID=Physo135645;Parent=Physo135645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 507349 508695 . + 0 ID=Physo135645;Parent=Physo135645;rank=1 scaffold_39 . exon 507349 508695 . + . ID=Physo135645.1;Parent=Physo135645;constitutive=1;rank=1 scaffold_39 . biological_region 515553 515555 0.999 - . logic_name=eponine scaffold_39 . biological_region 517443 517451 0.999 + . logic_name=eponine scaffold_39 . biological_region 517505 517507 0.999 + . logic_name=eponine scaffold_39 . biological_region 517587 517592 0.999 - . logic_name=eponine scaffold_39 . biological_region 517739 517739 0.999 - . logic_name=eponine scaffold_39 ensembl snoRNA_gene 517286 517440 . + . ID=EPrPSOG00000000021;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_39 ensembl snoRNA 517286 517440 . + . ID=EPrPSOT00000000021;Parent=EPrPSOG00000000021;biotype=snoRNA;logic_name=ncrna_eg scaffold_39 ensembl snoRNA_gene 516491 516712 . + . ID=EPrPSOG00000000123;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_39 ensembl snoRNA 516491 516712 . + . ID=EPrPSOT00000000123;Parent=EPrPSOG00000000123;biotype=snoRNA;logic_name=ncrna_eg scaffold_39 . exon 517286 517440 . + . ID=EPrPSOE00000000021;Parent=EPrPSOT00000000021;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . exon 516491 516712 . + . ID=EPrPSOE00000000123;Parent=EPrPSOT00000000123;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 509929 511704 . + . ID=Physo135646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390133;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 509929 511704 . + . ID=Physo135646;Parent=Physo135646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 509929 511704 . + 0 ID=Physo135646;Parent=Physo135646;rank=1 scaffold_39 . exon 509929 511704 . + . ID=Physo135646.1;Parent=Physo135646;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 512854 514473 . + . ID=Physo135647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390134;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 512854 514473 . + . ID=Physo135647;Parent=Physo135647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 512854 514473 . + 0 ID=Physo135647;Parent=Physo135647;rank=1 scaffold_39 . exon 512854 514473 . + . ID=Physo135647.1;Parent=Physo135647;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 515282 515584 . + . ID=Physo135648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390135;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 515282 515584 . + . ID=Physo135648;Parent=Physo135648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 515282 515584 . + 0 ID=Physo135648;Parent=Physo135648;rank=1 scaffold_39 . exon 515282 515584 . + . ID=Physo135648.1;Parent=Physo135648;constitutive=1;rank=1 scaffold_39 . repeat_region 523275 525421 . + . description=GypsyPi-1c_I-int scaffold_39 ensembl protein_coding_gene 523882 524622 . + . ID=Physo108889;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_390005;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 523882 524622 . + . ID=Physo108889;Parent=Physo108889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 523882 524622 . + 0 ID=Physo108889;Parent=Physo108889;rank=1 scaffold_39 . exon 523882 524622 . + . ID=Physo108889.1;Parent=Physo108889;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 524826 525631 . + . ID=Physo135650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390137;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 524826 525631 . + . ID=Physo135650;Parent=Physo135650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 524826 525631 . + . ID=Physo135650.1;Parent=Physo135650;constitutive=1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 525095 525631 . + 0 ID=Physo135650;Parent=Physo135650;rank=1 scaffold_39 ensembl protein_coding_gene 527330 528439 . - . ID=Physo135651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390138;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 527330 528439 . - . ID=Physo135651;Parent=Physo135651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 527330 527650 . - 0 ID=Physo135651;Parent=Physo135651;rank=3 scaffold_39 . exon 527330 527650 . - . ID=Physo135651.3;Parent=Physo135651;constitutive=1;rank=3 scaffold_39 . CDS 527725 528247 . - 0 ID=Physo135651;Parent=Physo135651;rank=2 scaffold_39 . exon 527725 528247 . - . ID=Physo135651.2;Parent=Physo135651;constitutive=1;ensembl_phase=2;rank=2 scaffold_39 . CDS 528360 528439 . - 0 ID=Physo135651;Parent=Physo135651;rank=1 scaffold_39 . exon 528360 528439 . - . ID=Physo135651.1;Parent=Physo135651;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_39 . repeat_region 529090 529098 . ? . description=dust scaffold_39 . repeat_region 530405 530422 . ? . description=dust scaffold_39 . repeat_region 530520 530527 . ? . description=dust scaffold_39 . biological_region 530949 530953 0.999 - . logic_name=eponine scaffold_39 . repeat_region 536235 536247 . ? . description=dust scaffold_39 ensembl protein_coding_gene 530403 532206 . + . ID=Physo135652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390139;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 530403 532206 . + . ID=Physo135652;Parent=Physo135652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 530403 530450 . + 0 ID=Physo135652;Parent=Physo135652;rank=1 scaffold_39 . exon 530403 530450 . + . ID=Physo135652.1;Parent=Physo135652;constitutive=1;rank=1 scaffold_39 . CDS 530600 530777 . + 0 ID=Physo135652;Parent=Physo135652;rank=2 scaffold_39 . exon 530600 530777 . + . ID=Physo135652.2;Parent=Physo135652;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_39 . CDS 530862 532112 . + 0 ID=Physo135652;Parent=Physo135652;rank=3 scaffold_39 . exon 530862 532112 . + . ID=Physo135652.3;Parent=Physo135652;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_39 . CDS 532160 532206 . + 0 ID=Physo135652;Parent=Physo135652;rank=4 scaffold_39 . exon 532160 532206 . + . ID=Physo135652.4;Parent=Physo135652;constitutive=1;ensembl_phase=1;rank=4 scaffold_39 ensembl protein_coding_gene 539882 541936 . + . ID=Physo135653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390140;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 539882 541936 . + . ID=Physo135653;Parent=Physo135653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 539882 541352 . + 0 ID=Physo135653;Parent=Physo135653;rank=1 scaffold_39 . exon 539882 541352 . + . ID=Physo135653.1;Parent=Physo135653;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 541653 541936 . + 0 ID=Physo135653;Parent=Physo135653;rank=2 scaffold_39 . exon 541653 541936 . + . ID=Physo135653.2;Parent=Physo135653;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 ensembl protein_coding_gene 545299 545802 . - . ID=Physo135654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390141;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 545299 545802 . - . ID=Physo135654;Parent=Physo135654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 545299 545802 . - 0 ID=Physo135654;Parent=Physo135654;rank=1 scaffold_39 . exon 545299 545802 . - . ID=Physo135654.1;Parent=Physo135654;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 547068 548288 . + . ID=Physo135655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390142;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 547068 548288 . + . ID=Physo135655;Parent=Physo135655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 547068 548288 . + 0 ID=Physo135655;Parent=Physo135655;rank=1 scaffold_39 . exon 547068 548288 . + . ID=Physo135655.1;Parent=Physo135655;constitutive=1;rank=1 scaffold_39 . biological_region 550614 550615 0.999 + . logic_name=eponine scaffold_39 . biological_region 550973 550974 0.999 - . logic_name=eponine scaffold_39 . repeat_region 554356 554365 . ? . description=dust scaffold_39 . biological_region 555853 555856 0.999 - . logic_name=eponine scaffold_39 . biological_region 556045 556046 0.999 + . logic_name=eponine scaffold_39 . biological_region 557535 557537 0.999 - . logic_name=eponine scaffold_39 . biological_region 557535 557539 0.999 + . logic_name=eponine scaffold_39 ensembl protein_coding_gene 548752 549938 . + . ID=Physo135656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390143;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 548752 549938 . + . ID=Physo135656;Parent=Physo135656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 548752 549244 . + 0 ID=Physo135656;Parent=Physo135656;rank=1 scaffold_39 . exon 548752 549244 . + . ID=Physo135656.1;Parent=Physo135656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 549304 549938 . + 0 ID=Physo135656;Parent=Physo135656;rank=2 scaffold_39 . exon 549304 549938 . + . ID=Physo135656.2;Parent=Physo135656;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 ensembl protein_coding_gene 550878 552080 . + . ID=Physo135657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390144;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 550878 552080 . + . ID=Physo135657;Parent=Physo135657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 550878 552080 . + 0 ID=Physo135657;Parent=Physo135657;rank=1 scaffold_39 . exon 550878 552080 . + . ID=Physo135657.1;Parent=Physo135657;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 553073 556561 . + . ID=Physo135658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390145;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 553073 556561 . + . ID=Physo135658;Parent=Physo135658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 553073 553970 . + 0 ID=Physo135658;Parent=Physo135658;rank=1 scaffold_39 . exon 553073 553970 . + . ID=Physo135658.1;Parent=Physo135658;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . CDS 554127 554167 . + 0 ID=Physo135658;Parent=Physo135658;rank=2 scaffold_39 . exon 554127 554167 . + . ID=Physo135658.2;Parent=Physo135658;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 554384 556561 . + 0 ID=Physo135658;Parent=Physo135658;rank=3 scaffold_39 . exon 554384 556561 . + . ID=Physo135658.3;Parent=Physo135658;constitutive=1;rank=3 scaffold_39 ensembl protein_coding_gene 556771 559219 . - . ID=Physo135659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390146;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 556771 559219 . - . ID=Physo135659;Parent=Physo135659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 556771 556893 . - 0 ID=Physo135659;Parent=Physo135659;rank=2 scaffold_39 . exon 556771 556893 . - . ID=Physo135659.2;Parent=Physo135659;constitutive=1;rank=2 scaffold_39 . CDS 556913 559219 . - 0 ID=Physo135659;Parent=Physo135659;rank=1 scaffold_39 . exon 556913 559219 . - . ID=Physo135659.1;Parent=Physo135659;constitutive=1;rank=1 scaffold_39 . repeat_region 565837 565881 . ? . description=trf scaffold_39 . repeat_region 566009 566081 . ? . description=trf scaffold_39 ensembl snoRNA_gene 567833 568057 . + . ID=EPrPSOG00000000046;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_39 ensembl snoRNA 567833 568057 . + . ID=EPrPSOT00000000046;Parent=EPrPSOG00000000046;biotype=snoRNA;logic_name=ncrna_eg scaffold_39 . exon 567833 568057 . + . ID=EPrPSOE00000000046;Parent=EPrPSOT00000000046;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 561262 562296 . - . ID=Physo108890;biotype=protein_coding;description=G protein beta subunit 1 [Source:UniProtKB/TrEMBL%3BAcc:B5M4T9];external_name=estExt_fgenesh1_pm.C_390006;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 561262 562296 . - . ID=Physo108890;Parent=Physo108890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 561262 562296 . - 0 ID=Physo108890;Parent=Physo108890;rank=1 scaffold_39 . exon 561262 562296 . - . ID=Physo108890.1;Parent=Physo108890;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 559571 561074 . + . ID=Physo135660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390147;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 559571 561074 . + . ID=Physo135660;Parent=Physo135660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 559571 559723 . + 0 ID=Physo135660;Parent=Physo135660;rank=1 scaffold_39 . exon 559571 559723 . + . ID=Physo135660.1;Parent=Physo135660;constitutive=1;rank=1 scaffold_39 . CDS 559806 561074 . + 0 ID=Physo135660;Parent=Physo135660;rank=2 scaffold_39 . exon 559806 561074 . + . ID=Physo135660.2;Parent=Physo135660;constitutive=1;rank=2 scaffold_39 . repeat_region 570108 570116 . ? . description=dust scaffold_39 . repeat_region 570174 570181 . ? . description=dust scaffold_39 . repeat_region 573921 573928 . ? . description=dust scaffold_39 . repeat_region 574540 574547 . ? . description=dust scaffold_39 . repeat_region 577724 577747 . ? . description=dust scaffold_39 . repeat_region 578308 578326 . ? . description=dust scaffold_39 ensembl protein_coding_gene 573430 573972 . + . ID=Physo117120;biotype=protein_coding;external_name=estExt_Genewise1.C_390013;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 573430 573972 . + . ID=Physo117120;Parent=Physo117120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . exon 573430 573864 . + . ID=Physo117120.1;Parent=Physo117120;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_39 . CDS 573681 573864 . + 0 ID=Physo117120;Parent=Physo117120;rank=1 scaffold_39 . CDS 573935 573972 . + 0 ID=Physo117120;Parent=Physo117120;rank=2 scaffold_39 . exon 573935 573972 . + . ID=Physo117120.2;Parent=Physo117120;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 ensembl protein_coding_gene 570592 572670 . - . ID=Physo135662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390149;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 570592 572670 . - . ID=Physo135662;Parent=Physo135662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 570592 571617 . - 0 ID=Physo135662;Parent=Physo135662;rank=2 scaffold_39 . exon 570592 571617 . - . ID=Physo135662.2;Parent=Physo135662;constitutive=1;rank=2 scaffold_39 . CDS 571774 572670 . - 0 ID=Physo135662;Parent=Physo135662;rank=1 scaffold_39 . exon 571774 572670 . - . ID=Physo135662.1;Parent=Physo135662;constitutive=1;rank=1 scaffold_39 ensembl protein_coding_gene 576015 577078 . - . ID=Physo135663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_390150;logic_name=jgi_physo1_1 scaffold_39 ensembl transcript 576015 577078 . - . ID=Physo135663;Parent=Physo135663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_39 . CDS 576015 576031 . - 0 ID=Physo135663;Parent=Physo135663;rank=2 scaffold_39 . exon 576015 576031 . - . ID=Physo135663.2;Parent=Physo135663;constitutive=1;ensembl_phase=1;rank=2 scaffold_39 . CDS 576115 577078 . - 0 ID=Physo135663;Parent=Physo135663;rank=1 scaffold_39 . exon 576115 577078 . - . ID=Physo135663.1;Parent=Physo135663;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_39 . repeat_region 581710 581816 . + . description=Polinton-1_PI scaffold_39 . repeat_region 581907 581996 . - . description=Polinton-1_PI scaffold_39 . repeat_region 582476 582771 . + . description=Polinton-1_PI scaffold_39 . repeat_region 583075 586440 . - . description=Polinton-1_PI scaffold_39 . repeat_region 586441 590737 . ? . description=dust scaffold_39 . repeat_region 591751 592691 . ? . description=dust scaffold_39 . repeat_region 592737 592745 . ? . description=dust scaffold_39 . repeat_region 596111 597308 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_37 1 622718 scaffold_37 . repeat_region 354 371 . ? . description=dust scaffold_37 . repeat_region 433 501 . + . description=Polinton-1_PI scaffold_37 . repeat_region 2072 2079 . ? . description=dust scaffold_37 . repeat_region 3240 3292 . ? . description=trf scaffold_37 . repeat_region 5796 8060 . + . description=Gypsy-2-I_PI-int scaffold_37 . repeat_region 8836 8888 . ? . description=trf scaffold_37 ensembl protein_coding_gene 3546 3869 . + . ID=Physo135232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370001;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 3546 3869 . + . ID=Physo135232;Parent=Physo135232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 3546 3869 . + 0 ID=Physo135232;Parent=Physo135232;rank=1 scaffold_37 . exon 3546 3869 . + . ID=Physo135232.1;Parent=Physo135232;constitutive=1;rank=1 scaffold_37 . biological_region 18280 18280 0.999 + . logic_name=eponine scaffold_37 . biological_region 18343 18346 0.999 + . logic_name=eponine scaffold_37 . biological_region 19011 19017 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 11316 18238 . - . ID=Physo135233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370002;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 11316 18238 . - . ID=Physo135233;Parent=Physo135233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 11316 11326 . - 0 ID=Physo135233;Parent=Physo135233;rank=10 scaffold_37 . exon 11316 11326 . - . ID=Physo135233.10;Parent=Physo135233;constitutive=1;ensembl_phase=1;rank=10 scaffold_37 . CDS 11490 12787 . - 0 ID=Physo135233;Parent=Physo135233;rank=9 scaffold_37 . exon 11490 12787 . - . ID=Physo135233.9;Parent=Physo135233;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_37 . CDS 12891 14490 . - 0 ID=Physo135233;Parent=Physo135233;rank=8 scaffold_37 . exon 12891 14490 . - . ID=Physo135233.8;Parent=Physo135233;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_37 . CDS 14623 15278 . - 0 ID=Physo135233;Parent=Physo135233;rank=7 scaffold_37 . exon 14623 15278 . - . ID=Physo135233.7;Parent=Physo135233;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_37 . CDS 15330 16086 . - 0 ID=Physo135233;Parent=Physo135233;rank=6 scaffold_37 . exon 15330 16086 . - . ID=Physo135233.6;Parent=Physo135233;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_37 . CDS 16134 16490 . - 0 ID=Physo135233;Parent=Physo135233;rank=5 scaffold_37 . exon 16134 16490 . - . ID=Physo135233.5;Parent=Physo135233;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_37 . CDS 16773 16988 . - 0 ID=Physo135233;Parent=Physo135233;rank=4 scaffold_37 . exon 16773 16988 . - . ID=Physo135233.4;Parent=Physo135233;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 17316 17385 . - 0 ID=Physo135233;Parent=Physo135233;rank=3 scaffold_37 . exon 17316 17385 . - . ID=Physo135233.3;Parent=Physo135233;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . CDS 17441 17728 . - 0 ID=Physo135233;Parent=Physo135233;rank=2 scaffold_37 . exon 17441 17728 . - . ID=Physo135233.2;Parent=Physo135233;constitutive=1;rank=2 scaffold_37 . CDS 17855 18238 . - 0 ID=Physo135233;Parent=Physo135233;rank=1 scaffold_37 . exon 17855 18238 . - . ID=Physo135233.1;Parent=Physo135233;constitutive=1;rank=1 scaffold_37 . repeat_region 19425 29654 . ? . description=dust scaffold_37 . repeat_region 29655 30208 . ? . description=dust scaffold_37 . repeat_region 30647 30666 . ? . description=trf scaffold_37 . biological_region 36330 36331 0.999 + . logic_name=eponine scaffold_37 . biological_region 36373 36377 0.999 - . logic_name=eponine scaffold_37 . biological_region 36430 36432 0.999 - . logic_name=eponine scaffold_37 . repeat_region 37707 37871 . ? . description=trf scaffold_37 . repeat_region 41242 41251 . ? . description=dust scaffold_37 . repeat_region 42067 42079 . ? . description=dust scaffold_37 . repeat_region 43208 43236 . + . description=(CTTAG)n scaffold_37 . repeat_region 44071 44078 . ? . description=dust scaffold_37 . repeat_region 46142 46194 . ? . description=dust scaffold_37 . repeat_region 46848 46855 . ? . description=dust scaffold_37 ensembl protein_coding_gene 44270 45396 . + . ID=Physo135234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370003;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 44270 45396 . + . ID=Physo135234;Parent=Physo135234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 44270 45396 . + . ID=Physo135234.1;Parent=Physo135234;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 44293 45396 . + 0 ID=Physo135234;Parent=Physo135234;rank=1 scaffold_37 ensembl protein_coding_gene 45544 46035 . - . ID=Physo135235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370004;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 45544 46035 . - . ID=Physo135235;Parent=Physo135235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 45544 46035 . - 0 ID=Physo135235;Parent=Physo135235;rank=1 scaffold_37 . exon 45544 46035 . - . ID=Physo135235.1;Parent=Physo135235;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 47724 49718 . - . ID=Physo135236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370005;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 47724 49718 . - . ID=Physo135236;Parent=Physo135236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 47724 48291 . - 0 ID=Physo135236;Parent=Physo135236;rank=2 scaffold_37 . exon 47724 48291 . - . ID=Physo135236.2;Parent=Physo135236;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 48517 49718 . - 0 ID=Physo135236;Parent=Physo135236;rank=1 scaffold_37 . exon 48517 49718 . - . ID=Physo135236.1;Parent=Physo135236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . biological_region 49426 49427 0.999 + . logic_name=eponine scaffold_37 . biological_region 49489 49489 0.999 - . logic_name=eponine scaffold_37 . repeat_region 49532 49569 . ? . description=trf scaffold_37 . biological_region 51616 51622 0.999 + . logic_name=eponine scaffold_37 . biological_region 51702 51706 0.999 + . logic_name=eponine scaffold_37 . repeat_region 51966 52043 . ? . description=trf scaffold_37 . biological_region 52018 52021 0.999 - . logic_name=eponine scaffold_37 . repeat_region 52114 52153 . ? . description=trf scaffold_37 . repeat_region 52241 52322 . ? . description=trf scaffold_37 . repeat_region 52399 52450 . ? . description=trf scaffold_37 . biological_region 54459 54460 0.999 + . logic_name=eponine scaffold_37 . biological_region 54722 54724 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 51691 53440 . + . ID=Physo135237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370006;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 51691 53440 . + . ID=Physo135237;Parent=Physo135237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 51691 53367 . + 0 ID=Physo135237;Parent=Physo135237;rank=1 scaffold_37 . exon 51691 53440 . + . ID=Physo135237.1;Parent=Physo135237;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_37 ensembl protein_coding_gene 54304 55182 . + . ID=Physo135238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370007;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 54304 55182 . + . ID=Physo135238;Parent=Physo135238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 54304 55182 . + 0 ID=Physo135238;Parent=Physo135238;rank=1 scaffold_37 . exon 54304 55182 . + . ID=Physo135238.1;Parent=Physo135238;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 57242 58360 . + . ID=Physo135239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370008;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 57242 58360 . + . ID=Physo135239;Parent=Physo135239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 57242 58360 . + 0 ID=Physo135239;Parent=Physo135239;rank=1 scaffold_37 . exon 57242 58360 . + . ID=Physo135239.1;Parent=Physo135239;constitutive=1;rank=1 scaffold_37 . repeat_region 59515 59525 . ? . description=dust scaffold_37 . repeat_region 62374 62381 . ? . description=dust scaffold_37 . repeat_region 62679 62686 . ? . description=dust scaffold_37 . repeat_region 65405 65418 . ? . description=dust scaffold_37 . repeat_region 68278 68558 . - . description=GypsyPi-1c_I-int scaffold_37 . repeat_region 68688 68707 . ? . description=dust scaffold_37 . repeat_region 68830 71207 . - . description=GypsyPi-1c_I-int scaffold_37 ensembl protein_coding_gene 66799 68263 . + . ID=Physo135240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370009;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 66799 68263 . + . ID=Physo135240;Parent=Physo135240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 66799 67270 . + 0 ID=Physo135240;Parent=Physo135240;rank=1 scaffold_37 . exon 66799 67270 . + . ID=Physo135240.1;Parent=Physo135240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 67614 67747 . + 0 ID=Physo135240;Parent=Physo135240;rank=2 scaffold_37 . exon 67614 67747 . + . ID=Physo135240.2;Parent=Physo135240;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 67787 68263 . + 0 ID=Physo135240;Parent=Physo135240;rank=3 scaffold_37 . exon 67787 68263 . + . ID=Physo135240.3;Parent=Physo135240;constitutive=1;rank=3 scaffold_37 ensembl protein_coding_gene 68516 73620 . - . ID=Physo135241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370010;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 68516 73620 . - . ID=Physo135241;Parent=Physo135241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 68516 69349 . - 0 ID=Physo135241;Parent=Physo135241;rank=7 scaffold_37 . exon 68516 69349 . - . ID=Physo135241.7;Parent=Physo135241;constitutive=1;rank=7 scaffold_37 . CDS 69419 69454 . - 0 ID=Physo135241;Parent=Physo135241;rank=6 scaffold_37 . CDS 69505 70852 . - 0 ID=Physo135241;Parent=Physo135241;rank=5 scaffold_37 . CDS 71076 71436 . - 0 ID=Physo135241;Parent=Physo135241;rank=4 scaffold_37 . CDS 71517 72273 . - 0 ID=Physo135241;Parent=Physo135241;rank=3 scaffold_37 . CDS 72314 72528 . - 0 ID=Physo135241;Parent=Physo135241;rank=2 scaffold_37 . CDS 73119 73620 . - 0 ID=Physo135241;Parent=Physo135241;rank=1 scaffold_37 . biological_region 70885 70887 0.999 + . logic_name=eponine scaffold_37 . biological_region 71740 71742 0.999 + . logic_name=eponine scaffold_37 . biological_region 71805 71807 0.999 - . logic_name=eponine scaffold_37 . biological_region 71874 71876 0.999 - . logic_name=eponine scaffold_37 . repeat_region 75491 75534 . ? . description=trf scaffold_37 . exon 69419 69454 . - . ID=Physo135241.6;Parent=Physo135241;constitutive=1;rank=6 scaffold_37 . exon 69505 70852 . - . ID=Physo135241.5;Parent=Physo135241;constitutive=1;ensembl_phase=2;rank=5 scaffold_37 . exon 71076 71436 . - . ID=Physo135241.4;Parent=Physo135241;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_37 . exon 71517 72273 . - . ID=Physo135241.3;Parent=Physo135241;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . exon 72314 72528 . - . ID=Physo135241.2;Parent=Physo135241;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . exon 73119 73620 . - . ID=Physo135241.1;Parent=Physo135241;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . repeat_region 79918 79930 . ? . description=dust scaffold_37 . repeat_region 83885 84175 . ? . description=dust scaffold_37 ensembl protein_coding_gene 84319 85692 . + . ID=Physo135242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370011;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 84319 85692 . + . ID=Physo135242;Parent=Physo135242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 84319 85692 . + 0 ID=Physo135242;Parent=Physo135242;rank=1 scaffold_37 . exon 84319 85692 . + . ID=Physo135242.1;Parent=Physo135242;constitutive=1;rank=1 scaffold_37 . repeat_region 90028 90051 . ? . description=trf scaffold_37 . biological_region 94049 94054 0.999 - . logic_name=eponine scaffold_37 . biological_region 94424 94426 0.999 + . logic_name=eponine scaffold_37 . biological_region 94820 94821 0.999 - . logic_name=eponine scaffold_37 . biological_region 95021 95022 0.999 - . logic_name=eponine scaffold_37 . repeat_region 97649 97767 . ? . description=trf scaffold_37 ensembl protein_coding_gene 91899 95103 . - . ID=Physo135243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370012;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 91899 95103 . - . ID=Physo135243;Parent=Physo135243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 91899 92151 . - 0 ID=Physo135243;Parent=Physo135243;rank=6 scaffold_37 . exon 91899 92151 . - . ID=Physo135243.6;Parent=Physo135243;constitutive=1;ensembl_phase=2;rank=6 scaffold_37 . CDS 92213 93179 . - 0 ID=Physo135243;Parent=Physo135243;rank=5 scaffold_37 . exon 92213 93179 . - . ID=Physo135243.5;Parent=Physo135243;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_37 . CDS 93227 93487 . - 0 ID=Physo135243;Parent=Physo135243;rank=4 scaffold_37 . exon 93227 93487 . - . ID=Physo135243.4;Parent=Physo135243;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 93524 93797 . - 0 ID=Physo135243;Parent=Physo135243;rank=3 scaffold_37 . exon 93524 93797 . - . ID=Physo135243.3;Parent=Physo135243;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . CDS 93859 94624 . - 0 ID=Physo135243;Parent=Physo135243;rank=2 scaffold_37 . exon 93859 94624 . - . ID=Physo135243.2;Parent=Physo135243;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 94739 95103 . - 0 ID=Physo135243;Parent=Physo135243;rank=1 scaffold_37 . exon 94739 95103 . - . ID=Physo135243.1;Parent=Physo135243;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . repeat_region 103158 103166 . ? . description=dust scaffold_37 . repeat_region 105142 105160 . ? . description=dust scaffold_37 . repeat_region 106277 106293 . ? . description=dust scaffold_37 . repeat_region 107699 107775 . + . description=GypsyPi-1c_LTR scaffold_37 . repeat_region 108661 108668 . ? . description=dust scaffold_37 ensembl protein_coding_gene 99984 101554 . - . ID=Physo135244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370013;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 99984 101554 . - . ID=Physo135244;Parent=Physo135244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 99984 100003 . - 0 ID=Physo135244;Parent=Physo135244;rank=4 scaffold_37 . exon 99984 100003 . - . ID=Physo135244.4;Parent=Physo135244;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 100043 100385 . - 0 ID=Physo135244;Parent=Physo135244;rank=3 scaffold_37 . exon 100043 100385 . - . ID=Physo135244.3;Parent=Physo135244;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . CDS 100452 100848 . - 0 ID=Physo135244;Parent=Physo135244;rank=2 scaffold_37 . exon 100452 100848 . - . ID=Physo135244.2;Parent=Physo135244;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 101049 101554 . - 0 ID=Physo135244;Parent=Physo135244;rank=1 scaffold_37 . exon 101049 101554 . - . ID=Physo135244.1;Parent=Physo135244;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . biological_region 110039 110041 0.999 + . logic_name=eponine scaffold_37 . biological_region 110139 110141 0.999 + . logic_name=eponine scaffold_37 . biological_region 110188 110192 0.999 - . logic_name=eponine scaffold_37 . biological_region 111739 111746 0.999 - . logic_name=eponine scaffold_37 . biological_region 111766 111766 0.999 + . logic_name=eponine scaffold_37 . biological_region 111782 111788 0.999 - . logic_name=eponine scaffold_37 . biological_region 111855 111856 0.999 - . logic_name=eponine scaffold_37 . biological_region 111911 111915 0.999 - . logic_name=eponine scaffold_37 . repeat_region 112067 112102 . ? . description=trf scaffold_37 . biological_region 112100 112105 0.999 + . logic_name=eponine scaffold_37 . biological_region 112151 112157 0.999 + . logic_name=eponine scaffold_37 . biological_region 112172 112174 0.999 - . logic_name=eponine scaffold_37 . biological_region 112208 112209 0.999 - . logic_name=eponine scaffold_37 . biological_region 112228 112234 0.999 + . logic_name=eponine scaffold_37 . biological_region 112285 112288 0.999 + . logic_name=eponine scaffold_37 . biological_region 112366 112372 0.999 - . logic_name=eponine scaffold_37 . biological_region 112453 112457 0.999 + . logic_name=eponine scaffold_37 . repeat_region 112557 112576 . ? . description=trf scaffold_37 . repeat_region 112836 112894 . ? . description=trf scaffold_37 . repeat_region 112845 112894 . ? . description=trf scaffold_37 . repeat_region 112846 112889 . ? . description=trf scaffold_37 . repeat_region 113635 113728 . ? . description=trf scaffold_37 . repeat_region 113665 113752 . ? . description=trf scaffold_37 . biological_region 113731 113732 0.999 + . logic_name=eponine scaffold_37 . repeat_region 113821 113873 . ? . description=trf scaffold_37 . repeat_region 113854 113956 . ? . description=trf scaffold_37 . repeat_region 113857 113956 . ? . description=trf scaffold_37 . repeat_region 113951 114017 . ? . description=trf scaffold_37 . repeat_region 113998 114205 . ? . description=trf scaffold_37 . repeat_region 114079 114122 . ? . description=trf scaffold_37 . biological_region 114221 114224 0.999 + . logic_name=eponine scaffold_37 . repeat_region 114247 114396 . ? . description=trf scaffold_37 . repeat_region 114247 114396 . ? . description=trf scaffold_37 . biological_region 114415 114415 0.999 - . logic_name=eponine scaffold_37 . biological_region 114469 114471 0.999 + . logic_name=eponine scaffold_37 . repeat_region 115232 115361 . ? . description=trf scaffold_37 . repeat_region 115315 115382 . ? . description=trf scaffold_37 . repeat_region 115421 115595 . ? . description=trf scaffold_37 . repeat_region 115459 115615 . ? . description=trf scaffold_37 . repeat_region 115555 115739 . ? . description=trf scaffold_37 . repeat_region 115669 115787 . ? . description=trf scaffold_37 . repeat_region 115738 115832 . ? . description=trf scaffold_37 . repeat_region 115882 115913 . ? . description=trf scaffold_37 . biological_region 117404 117405 0.999 - . logic_name=eponine scaffold_37 . repeat_region 118281 118392 . ? . description=trf scaffold_37 . repeat_region 118281 118392 . ? . description=trf scaffold_37 . repeat_region 118411 118460 . ? . description=trf scaffold_37 ensembl protein_coding_gene 111616 116390 . + . ID=Physo135245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370014;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 111616 116390 . + . ID=Physo135245;Parent=Physo135245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 111616 113145 . + 0 ID=Physo135245;Parent=Physo135245;rank=1 scaffold_37 . exon 111616 113145 . + . ID=Physo135245.1;Parent=Physo135245;constitutive=1;rank=1 scaffold_37 . CDS 113218 116241 . + 0 ID=Physo135245;Parent=Physo135245;rank=2 scaffold_37 . exon 113218 116390 . + . ID=Physo135245.2;Parent=Physo135245;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_37 ensembl protein_coding_gene 117141 119156 . + . ID=Physo135246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370015;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 117141 119156 . + . ID=Physo135246;Parent=Physo135246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 117141 119156 . + 0 ID=Physo135246;Parent=Physo135246;rank=1 scaffold_37 . exon 117141 119156 . + . ID=Physo135246.1;Parent=Physo135246;constitutive=1;rank=1 scaffold_37 . repeat_region 123392 123441 . ? . description=dust scaffold_37 ensembl protein_coding_gene 119945 120931 . + . ID=Physo135247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370016;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 119945 120931 . + . ID=Physo135247;Parent=Physo135247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 119945 120931 . + 0 ID=Physo135247;Parent=Physo135247;rank=1 scaffold_37 . exon 119945 120931 . + . ID=Physo135247.1;Parent=Physo135247;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 121962 123224 . - . ID=Physo135248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370017;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 121962 123224 . - . ID=Physo135248;Parent=Physo135248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 121962 123224 . - 0 ID=Physo135248;Parent=Physo135248;rank=1 scaffold_37 . exon 121962 123224 . - . ID=Physo135248.1;Parent=Physo135248;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 125755 126718 . + . ID=Physo135250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370019;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 125755 126718 . + . ID=Physo135250;Parent=Physo135250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 125755 126148 . + 0 ID=Physo135250;Parent=Physo135250;rank=1 scaffold_37 . exon 125755 126148 . + . ID=Physo135250.1;Parent=Physo135250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 126207 126718 . + 0 ID=Physo135250;Parent=Physo135250;rank=2 scaffold_37 . exon 126207 126718 . + . ID=Physo135250.2;Parent=Physo135250;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 ensembl protein_coding_gene 123545 125487 . + . ID=Physo157178;biotype=protein_coding;external_name=C_scaffold_37000002;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 123545 125487 . + . ID=Physo157178;Parent=Physo157178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 123545 123765 . + 0 ID=Physo157178;Parent=Physo157178;rank=1 scaffold_37 . exon 123545 123765 . + . ID=Physo157178.1;Parent=Physo157178;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 123853 124165 . + 0 ID=Physo157178;Parent=Physo157178;rank=2 scaffold_37 . exon 123853 124165 . + . ID=Physo157178.2;Parent=Physo157178;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 124399 124789 . + 0 ID=Physo157178;Parent=Physo157178;rank=3 scaffold_37 . exon 124399 124789 . + . ID=Physo157178.3;Parent=Physo157178;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . CDS 124892 125056 . + 0 ID=Physo157178;Parent=Physo157178;rank=4 scaffold_37 . exon 124892 125056 . + . ID=Physo157178.4;Parent=Physo157178;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 125321 125487 . + 0 ID=Physo157178;Parent=Physo157178;rank=5 scaffold_37 . exon 125321 125487 . + . ID=Physo157178.5;Parent=Physo157178;constitutive=1;ensembl_phase=1;rank=5 scaffold_37 . biological_region 128606 128606 0.999 + . logic_name=eponine scaffold_37 . repeat_region 134079 140768 . ? . description=dust scaffold_37 . repeat_region 140769 141629 . ? . description=trf scaffold_37 . repeat_region 142272 142321 . ? . description=dust scaffold_37 . repeat_region 144971 144980 . ? . description=dust scaffold_37 . repeat_region 147990 148000 . ? . description=dust scaffold_37 . biological_region 159262 159265 0.999 + . logic_name=eponine scaffold_37 . biological_region 160555 160559 0.999 - . logic_name=eponine scaffold_37 . biological_region 160693 160695 0.999 - . logic_name=eponine scaffold_37 . repeat_region 166196 166203 . ? . description=dust scaffold_37 . repeat_region 166482 166591 . ? . description=trf scaffold_37 ensembl protein_coding_gene 171847 172263 . - . ID=Physo108861;biotype=protein_coding;description=Elicitor Avr1b [Source:UniProtKB/TrEMBL%3BAcc:Q8L552];external_name=AVR1B;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 171847 172263 . - . ID=Physo108861;Parent=Physo108861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 171847 172263 . - 0 ID=Physo108861;Parent=Physo108861;rank=1 scaffold_37 . exon 171847 172263 . - . ID=Physo108861.1;Parent=Physo108861;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 176976 178019 . - . ID=Physo108862;biotype=protein_coding;description=Putative phosphatidylinositol-4-phosphate binding protein [Source:UniProtKB/TrEMBL%3BAcc:Q8LSI2];external_name=estExt_fgenesh1_pm.C_370002;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 176976 178019 . - . ID=Physo108862;Parent=Physo108862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 176976 178019 . - 0 ID=Physo108862;Parent=Physo108862;rank=1 scaffold_37 . exon 176976 178019 . - . ID=Physo108862.1;Parent=Physo108862;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 168765 169792 . + . ID=Physo135251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370020;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 168765 169792 . + . ID=Physo135251;Parent=Physo135251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 168765 168777 . + 0 ID=Physo135251;Parent=Physo135251;rank=1 scaffold_37 . exon 168765 168777 . + . ID=Physo135251.1;Parent=Physo135251;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 169419 169792 . + 0 ID=Physo135251;Parent=Physo135251;rank=2 scaffold_37 . exon 169419 169792 . + . ID=Physo135251.2;Parent=Physo135251;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . biological_region 178295 178296 0.999 + . logic_name=eponine scaffold_37 . biological_region 179122 179126 0.999 + . logic_name=eponine scaffold_37 . biological_region 181448 181450 0.999 - . logic_name=eponine scaffold_37 . biological_region 183591 183595 0.999 - . logic_name=eponine scaffold_37 . repeat_region 185546 185596 . ? . description=trf scaffold_37 . repeat_region 186194 186204 . ? . description=dust scaffold_37 ensembl protein_coding_gene 178846 179838 . - . ID=Physo108863;biotype=protein_coding;description=Exonuclease [Source:UniProtKB/TrEMBL%3BAcc:Q8LSI3];external_name=estExt_fgenesh1_pm.C_370003;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 178846 179838 . - . ID=Physo108863;Parent=Physo108863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 178846 179838 . - 0 ID=Physo108863;Parent=Physo108863;rank=1 scaffold_37 . exon 178846 179838 . - . ID=Physo108863.1;Parent=Physo108863;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 181784 183520 . - . ID=Physo116990;biotype=protein_coding;external_name=estExt_Genewise1.C_370070;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 181784 183520 . - . ID=Physo116990;Parent=Physo116990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 181784 182938 . - 0 ID=Physo116990;Parent=Physo116990;rank=2 scaffold_37 . exon 181784 182938 . - . ID=Physo116990.2;Parent=Physo116990;constitutive=1;rank=2 scaffold_37 . CDS 182993 183487 . - 0 ID=Physo116990;Parent=Physo116990;rank=1 scaffold_37 . exon 182993 183520 . - . ID=Physo116990.1;Parent=Physo116990;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 ensembl protein_coding_gene 179967 181675 . + . ID=Physo135255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370024;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 179967 181675 . + . ID=Physo135255;Parent=Physo135255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 179967 181673 . + 0 ID=Physo135255;Parent=Physo135255;rank=1 scaffold_37 . exon 179967 181675 . + . ID=Physo135255.1;Parent=Physo135255;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_37 . repeat_region 199323 199330 . ? . description=dust scaffold_37 . repeat_region 199748 199768 . ? . description=trf scaffold_37 . biological_region 200297 200301 0.999 - . logic_name=eponine scaffold_37 . biological_region 201161 201164 0.999 - . logic_name=eponine scaffold_37 . biological_region 201278 201281 0.999 - . logic_name=eponine scaffold_37 . repeat_region 204749 204758 . ? . description=dust scaffold_37 . repeat_region 207228 207261 . ? . description=trf scaffold_37 ensembl protein_coding_gene 200218 201288 . - . ID=Physo135257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370026;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 200218 201288 . - . ID=Physo135257;Parent=Physo135257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 200218 201288 . - 0 ID=Physo135257;Parent=Physo135257;rank=1 scaffold_37 . exon 200218 201288 . - . ID=Physo135257.1;Parent=Physo135257;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 213141 213953 . - . ID=Physo135258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370027;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 213141 213953 . - . ID=Physo135258;Parent=Physo135258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 213141 213953 . - 0 ID=Physo135258;Parent=Physo135258;rank=1 scaffold_37 . exon 213141 213953 . - . ID=Physo135258.1;Parent=Physo135258;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 214514 215161 . - . ID=Physo135259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370028;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 214514 215161 . - . ID=Physo135259;Parent=Physo135259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 214514 215161 . - 0 ID=Physo135259;Parent=Physo135259;rank=1 scaffold_37 . exon 214514 215161 . - . ID=Physo135259.1;Parent=Physo135259;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 216871 217717 . - . ID=Physo135260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370029;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 216871 217717 . - . ID=Physo135260;Parent=Physo135260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 216871 217717 . - . ID=Physo135260.1;Parent=Physo135260;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_37 . CDS 216923 217717 . - 0 ID=Physo135260;Parent=Physo135260;rank=1 scaffold_37 . biological_region 217798 217804 0.999 - . logic_name=eponine scaffold_37 . biological_region 217839 217844 0.999 + . logic_name=eponine scaffold_37 . biological_region 217853 217859 0.999 + . logic_name=eponine scaffold_37 . biological_region 217917 217918 0.999 + . logic_name=eponine scaffold_37 . biological_region 218004 218005 0.999 + . logic_name=eponine scaffold_37 . biological_region 218045 218052 0.999 + . logic_name=eponine scaffold_37 . biological_region 218077 218085 0.999 + . logic_name=eponine scaffold_37 . biological_region 218132 218137 0.999 + . logic_name=eponine scaffold_37 . biological_region 218224 218230 0.999 - . logic_name=eponine scaffold_37 . biological_region 218322 218324 0.999 - . logic_name=eponine scaffold_37 . biological_region 218405 218408 0.999 + . logic_name=eponine scaffold_37 . biological_region 218613 218613 0.999 - . logic_name=eponine scaffold_37 . biological_region 218644 218648 0.999 + . logic_name=eponine scaffold_37 . biological_region 218664 218671 0.999 + . logic_name=eponine scaffold_37 . biological_region 219411 219416 0.999 + . logic_name=eponine scaffold_37 . biological_region 220277 220278 0.999 - . logic_name=eponine scaffold_37 . biological_region 222325 222328 0.999 - . logic_name=eponine scaffold_37 . biological_region 223310 223315 0.999 + . logic_name=eponine scaffold_37 . biological_region 223432 223434 0.999 - . logic_name=eponine scaffold_37 . biological_region 223706 223712 0.999 + . logic_name=eponine scaffold_37 . biological_region 223716 223719 0.999 - . logic_name=eponine scaffold_37 . biological_region 223829 223834 0.999 - . logic_name=eponine scaffold_37 . biological_region 224211 224214 0.999 - . logic_name=eponine scaffold_37 . repeat_region 225855 225905 . ? . description=trf scaffold_37 ensembl protein_coding_gene 224505 225230 . + . ID=Physo108865;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_370005;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 224505 225230 . + . ID=Physo108865;Parent=Physo108865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 224505 225230 . + 0 ID=Physo108865;Parent=Physo108865;rank=1 scaffold_37 . exon 224505 225230 . + . ID=Physo108865.1;Parent=Physo108865;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 219485 220806 . - . ID=Physo135261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370030;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 219485 220806 . - . ID=Physo135261;Parent=Physo135261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 219485 219634 . - 0 ID=Physo135261;Parent=Physo135261;rank=4 scaffold_37 . exon 219485 219634 . - . ID=Physo135261.4;Parent=Physo135261;constitutive=1;rank=4 scaffold_37 . CDS 219796 219918 . - 0 ID=Physo135261;Parent=Physo135261;rank=3 scaffold_37 . exon 219796 219918 . - . ID=Physo135261.3;Parent=Physo135261;constitutive=1;rank=3 scaffold_37 . CDS 220167 220610 . - 0 ID=Physo135261;Parent=Physo135261;rank=2 scaffold_37 . exon 220167 220610 . - . ID=Physo135261.2;Parent=Physo135261;constitutive=1;rank=2 scaffold_37 . CDS 220735 220806 . - 0 ID=Physo135261;Parent=Physo135261;rank=1 scaffold_37 . exon 220735 220806 . - . ID=Physo135261.1;Parent=Physo135261;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 223141 224312 . + . ID=Physo135263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370032;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 223141 224312 . + . ID=Physo135263;Parent=Physo135263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 223141 223821 . + . ID=Physo135263.1;Parent=Physo135263;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 223227 223821 . + 0 ID=Physo135263;Parent=Physo135263;rank=1 scaffold_37 . CDS 223951 224001 . + 0 ID=Physo135263;Parent=Physo135263;rank=2 scaffold_37 . exon 223951 224001 . + . ID=Physo135263.2;Parent=Physo135263;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 224096 224241 . + 0 ID=Physo135263;Parent=Physo135263;rank=3 scaffold_37 . exon 224096 224312 . + . ID=Physo135263.3;Parent=Physo135263;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_37 ensembl protein_coding_gene 221693 222936 . - . ID=Physo157180;biotype=protein_coding;external_name=C_scaffold_37000004;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 221693 222936 . - . ID=Physo157180;Parent=Physo157180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 221693 221827 . - 0 ID=Physo157180;Parent=Physo157180;rank=6 scaffold_37 . exon 221693 221827 . - . ID=Physo157180.6;Parent=Physo157180;constitutive=1;rank=6 scaffold_37 . CDS 221901 222023 . - 0 ID=Physo157180;Parent=Physo157180;rank=5 scaffold_37 . exon 221901 222023 . - . ID=Physo157180.5;Parent=Physo157180;constitutive=1;rank=5 scaffold_37 . CDS 222072 222100 . - 0 ID=Physo157180;Parent=Physo157180;rank=4 scaffold_37 . exon 222072 222100 . - . ID=Physo157180.4;Parent=Physo157180;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 222237 222642 . - 0 ID=Physo157180;Parent=Physo157180;rank=3 scaffold_37 . exon 222237 222642 . - . ID=Physo157180.3;Parent=Physo157180;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . CDS 222715 222843 . - 0 ID=Physo157180;Parent=Physo157180;rank=2 scaffold_37 . exon 222715 222843 . - . ID=Physo157180.2;Parent=Physo157180;constitutive=1;rank=2 scaffold_37 . CDS 222925 222936 . - 0 ID=Physo157180;Parent=Physo157180;rank=1 scaffold_37 . exon 222925 222936 . - . ID=Physo157180.1;Parent=Physo157180;constitutive=1;rank=1 scaffold_37 . repeat_region 229485 229492 . ? . description=dust scaffold_37 . repeat_region 230703 230710 . ? . description=dust scaffold_37 . repeat_region 240779 240808 . ? . description=trf scaffold_37 . repeat_region 243925 243960 . ? . description=trf scaffold_37 . biological_region 244321 244323 0.999 - . logic_name=eponine scaffold_37 . biological_region 244430 244432 0.999 - . logic_name=eponine scaffold_37 . biological_region 244448 244454 0.999 - . logic_name=eponine scaffold_37 . biological_region 244503 244510 0.999 + . logic_name=eponine scaffold_37 . biological_region 244555 244557 0.999 - . logic_name=eponine scaffold_37 . biological_region 246223 246228 0.999 + . logic_name=eponine scaffold_37 ensembl protein_coding_gene 241475 242215 . - . ID=Physo108866;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_370006;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 241475 242215 . - . ID=Physo108866;Parent=Physo108866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 241475 241892 . - 0 ID=Physo108866;Parent=Physo108866;rank=2 scaffold_37 . exon 241475 241892 . - . ID=Physo108866.2;Parent=Physo108866;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 241977 242215 . - 0 ID=Physo108866;Parent=Physo108866;rank=1 scaffold_37 . exon 241977 242215 . - . ID=Physo108866.1;Parent=Physo108866;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 240246 241123 . - . ID=Physo135265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370034;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 240246 241123 . - . ID=Physo135265;Parent=Physo135265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 240246 240352 . - 0 ID=Physo135265;Parent=Physo135265;rank=4 scaffold_37 . exon 240246 240352 . - . ID=Physo135265.4;Parent=Physo135265;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 240432 240476 . - 0 ID=Physo135265;Parent=Physo135265;rank=3 scaffold_37 . exon 240432 240476 . - . ID=Physo135265.3;Parent=Physo135265;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 240552 240987 . - 0 ID=Physo135265;Parent=Physo135265;rank=2 scaffold_37 . exon 240552 240987 . - . ID=Physo135265.2;Parent=Physo135265;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_37 . CDS 241079 241123 . - 0 ID=Physo135265;Parent=Physo135265;rank=1 scaffold_37 . exon 241079 241123 . - . ID=Physo135265.1;Parent=Physo135265;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 242486 243285 . + . ID=Physo135267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370036;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 242486 243285 . + . ID=Physo135267;Parent=Physo135267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 242486 242577 . + . ID=Physo135267.1;Parent=Physo135267;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 242505 242577 . + 0 ID=Physo135267;Parent=Physo135267;rank=1 scaffold_37 . CDS 242679 242845 . + 0 ID=Physo135267;Parent=Physo135267;rank=2 scaffold_37 . exon 242679 242845 . + . ID=Physo135267.2;Parent=Physo135267;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 242915 243103 . + 0 ID=Physo135267;Parent=Physo135267;rank=3 scaffold_37 . exon 242915 243285 . + . ID=Physo135267.3;Parent=Physo135267;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_37 ensembl protein_coding_gene 245965 246862 . - . ID=Physo135269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370038;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 245965 246862 . - . ID=Physo135269;Parent=Physo135269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 245965 246516 . - 0 ID=Physo135269;Parent=Physo135269;rank=3 scaffold_37 . exon 245965 246516 . - . ID=Physo135269.3;Parent=Physo135269;constitutive=1;rank=3 scaffold_37 . CDS 246585 246692 . - 0 ID=Physo135269;Parent=Physo135269;rank=2 scaffold_37 . exon 246585 246692 . - . ID=Physo135269.2;Parent=Physo135269;constitutive=1;rank=2 scaffold_37 . CDS 246758 246862 . - 0 ID=Physo135269;Parent=Physo135269;rank=1 scaffold_37 . exon 246758 246862 . - . ID=Physo135269.1;Parent=Physo135269;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 243470 243811 . - . ID=Physo157183;biotype=protein_coding;external_name=C_scaffold_37000007;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 243470 243811 . - . ID=Physo157183;Parent=Physo157183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 243470 243556 . - 0 ID=Physo157183;Parent=Physo157183;rank=3 scaffold_37 . exon 243470 243556 . - . ID=Physo157183.3;Parent=Physo157183;constitutive=1;rank=3 scaffold_37 . CDS 243620 243681 . - 0 ID=Physo157183;Parent=Physo157183;rank=2 scaffold_37 . exon 243620 243681 . - . ID=Physo157183.2;Parent=Physo157183;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 243763 243811 . - 0 ID=Physo157183;Parent=Physo157183;rank=1 scaffold_37 . exon 243763 243811 . - . ID=Physo157183.1;Parent=Physo157183;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 244186 245389 . + . ID=Physo157184;biotype=protein_coding;external_name=C_scaffold_37000008;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 244186 245389 . + . ID=Physo157184;Parent=Physo157184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 244186 244647 . + 0 ID=Physo157184;Parent=Physo157184;rank=1 scaffold_37 . exon 244186 244647 . + . ID=Physo157184.1;Parent=Physo157184;constitutive=1;rank=1 scaffold_37 . CDS 244941 245021 . + 0 ID=Physo157184;Parent=Physo157184;rank=2 scaffold_37 . exon 244941 245021 . + . ID=Physo157184.2;Parent=Physo157184;constitutive=1;rank=2 scaffold_37 . CDS 245093 245206 . + 0 ID=Physo157184;Parent=Physo157184;rank=3 scaffold_37 . exon 245093 245206 . + . ID=Physo157184.3;Parent=Physo157184;constitutive=1;rank=3 scaffold_37 . CDS 245273 245389 . + 0 ID=Physo157184;Parent=Physo157184;rank=4 scaffold_37 . exon 245273 245389 . + . ID=Physo157184.4;Parent=Physo157184;constitutive=1;rank=4 scaffold_37 . repeat_region 247738 247801 . ? . description=dust scaffold_37 . repeat_region 254306 254360 . ? . description=dust scaffold_37 ensembl protein_coding_gene 249399 249881 . - . ID=Physo108868;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_370008;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 249399 249881 . - . ID=Physo108868;Parent=Physo108868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 249399 249839 . - 0 ID=Physo108868;Parent=Physo108868;rank=2 scaffold_37 . exon 249399 249839 . - . ID=Physo108868.2;Parent=Physo108868;constitutive=1;rank=2 scaffold_37 . CDS 249861 249881 . - 0 ID=Physo108868;Parent=Physo108868;rank=1 scaffold_37 . exon 249861 249881 . - . ID=Physo108868.1;Parent=Physo108868;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 250264 250631 . + . ID=Physo108869;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_370009;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 250264 250631 . + . ID=Physo108869;Parent=Physo108869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 250264 250299 . + 0 ID=Physo108869;Parent=Physo108869;rank=1 scaffold_37 . exon 250264 250299 . + . ID=Physo108869.1;Parent=Physo108869;constitutive=1;rank=1 scaffold_37 . CDS 250332 250631 . + 0 ID=Physo108869;Parent=Physo108869;rank=2 scaffold_37 . exon 250332 250631 . + . ID=Physo108869.2;Parent=Physo108869;constitutive=1;rank=2 scaffold_37 ensembl protein_coding_gene 247694 248112 . - . ID=Physo117014;biotype=protein_coding;external_name=estExt_Genewise1.C_370094;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 247694 248112 . - . ID=Physo117014;Parent=Physo117014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 247694 248112 . - . ID=Physo117014.1;Parent=Physo117014;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_37 . CDS 247696 248112 . - 0 ID=Physo117014;Parent=Physo117014;rank=1 scaffold_37 ensembl protein_coding_gene 248298 249334 . + . ID=Physo135271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370040;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 248298 249334 . + . ID=Physo135271;Parent=Physo135271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 248298 249020 . + . ID=Physo135271.1;Parent=Physo135271;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 248367 249020 . + 0 ID=Physo135271;Parent=Physo135271;rank=1 scaffold_37 . CDS 249100 249189 . + 0 ID=Physo135271;Parent=Physo135271;rank=2 scaffold_37 . exon 249100 249334 . + . ID=Physo135271.2;Parent=Physo135271;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_37 ensembl protein_coding_gene 250744 253945 . - . ID=Physo135274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370043;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 250744 253945 . - . ID=Physo135274;Parent=Physo135274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 250744 253945 . - . ID=Physo135274.1;Parent=Physo135274;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_37 . CDS 250745 253945 . - 0 ID=Physo135274;Parent=Physo135274;rank=1 scaffold_37 ensembl protein_coding_gene 254727 256031 . + . ID=Physo157186;biotype=protein_coding;external_name=C_scaffold_37000010;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 254727 256031 . + . ID=Physo157186;Parent=Physo157186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 254727 255066 . + 0 ID=Physo157186;Parent=Physo157186;rank=1 scaffold_37 . exon 254727 255066 . + . ID=Physo157186.1;Parent=Physo157186;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 255100 255546 . + 0 ID=Physo157186;Parent=Physo157186;rank=2 scaffold_37 . exon 255100 255546 . + . ID=Physo157186.2;Parent=Physo157186;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 255577 256031 . + 0 ID=Physo157186;Parent=Physo157186;rank=3 scaffold_37 . exon 255577 256031 . + . ID=Physo157186.3;Parent=Physo157186;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 ensembl protein_coding_gene 256383 258282 . - . ID=Physo157187;biotype=protein_coding;external_name=C_scaffold_37000011;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 256383 258282 . - . ID=Physo157187;Parent=Physo157187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 256383 256832 . - 0 ID=Physo157187;Parent=Physo157187;rank=3 scaffold_37 . exon 256383 256832 . - . ID=Physo157187.3;Parent=Physo157187;constitutive=1;rank=3 scaffold_37 . CDS 257254 257640 . - 0 ID=Physo157187;Parent=Physo157187;rank=2 scaffold_37 . CDS 257719 258282 . - 0 ID=Physo157187;Parent=Physo157187;rank=1 scaffold_37 . biological_region 257264 257265 0.999 - . logic_name=eponine scaffold_37 . biological_region 257373 257373 0.999 - . logic_name=eponine scaffold_37 . biological_region 257513 257522 0.999 - . logic_name=eponine scaffold_37 . repeat_region 258040 258059 . ? . description=trf scaffold_37 . biological_region 258137 258142 0.999 + . logic_name=eponine scaffold_37 . biological_region 258146 258146 0.999 - . logic_name=eponine scaffold_37 . biological_region 258267 258271 0.999 - . logic_name=eponine scaffold_37 . biological_region 258311 258316 0.999 - . logic_name=eponine scaffold_37 . biological_region 258354 258362 0.999 - . logic_name=eponine scaffold_37 . biological_region 258381 258384 0.999 - . logic_name=eponine scaffold_37 . repeat_region 259274 259326 . ? . description=trf scaffold_37 . repeat_region 259274 259338 . ? . description=trf scaffold_37 . repeat_region 259274 259354 . ? . description=trf scaffold_37 . repeat_region 259274 259354 . ? . description=trf scaffold_37 . repeat_region 259283 259354 . ? . description=trf scaffold_37 . biological_region 260404 260410 0.999 + . logic_name=eponine scaffold_37 . biological_region 260893 260894 0.999 - . logic_name=eponine scaffold_37 . biological_region 261078 261079 0.999 - . logic_name=eponine scaffold_37 . biological_region 261131 261136 0.999 + . logic_name=eponine scaffold_37 . repeat_region 261558 261577 . ? . description=trf scaffold_37 . repeat_region 262139 262171 . ? . description=trf scaffold_37 ensembl protein_coding_gene 258829 259585 . + . ID=Physo135278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370047;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 258829 259585 . + . ID=Physo135278;Parent=Physo135278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 258829 259112 . + . ID=Physo135278.1;Parent=Physo135278;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 258882 259112 . + 0 ID=Physo135278;Parent=Physo135278;rank=1 scaffold_37 . CDS 259238 259357 . + 0 ID=Physo135278;Parent=Physo135278;rank=2 scaffold_37 . exon 259238 259585 . + . ID=Physo135278.2;Parent=Physo135278;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_37 ensembl protein_coding_gene 259585 261252 . - . ID=Physo135279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370048;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 259585 261252 . - . ID=Physo135279;Parent=Physo135279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 259585 259876 . - . ID=Physo135279.2;Parent=Physo135279;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_37 . CDS 259721 259876 . - 0 ID=Physo135279;Parent=Physo135279;rank=2 scaffold_37 . CDS 259972 261252 . - 0 ID=Physo135279;Parent=Physo135279;rank=1 scaffold_37 . exon 259972 261252 . - . ID=Physo135279.1;Parent=Physo135279;constitutive=1;rank=1 scaffold_37 . exon 257254 257640 . - . ID=Physo157187.2;Parent=Physo157187;constitutive=1;rank=2 scaffold_37 . exon 257719 258282 . - . ID=Physo157187.1;Parent=Physo157187;constitutive=1;rank=1 scaffold_37 . repeat_region 271172 271179 . ? . description=dust scaffold_37 . repeat_region 273612 273620 . ? . description=dust scaffold_37 ensembl protein_coding_gene 268454 269148 . - . ID=Physo135280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370049;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 268454 269148 . - . ID=Physo135280;Parent=Physo135280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 268454 268971 . - 0 ID=Physo135280;Parent=Physo135280;rank=2 scaffold_37 . exon 268454 268971 . - . ID=Physo135280.2;Parent=Physo135280;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 269004 269148 . - 0 ID=Physo135280;Parent=Physo135280;rank=1 scaffold_37 . exon 269004 269148 . - . ID=Physo135280.1;Parent=Physo135280;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . biological_region 277766 277769 0.999 - . logic_name=eponine scaffold_37 . repeat_region 287426 287433 . ? . description=dust scaffold_37 . repeat_region 292207 292214 . ? . description=dust scaffold_37 ensembl pseudogene 287680 289851 . - . ID=Physo135281;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_370050;logic_name=jgi_physo1_1 scaffold_37 ensembl pseudogene 287680 289851 . - . ID=Physo135281;Parent=Physo135281;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_37 . exon 287680 289851 . - . ID=Physo135281.1;Parent=Physo135281;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_37 ensembl protein_coding_gene 290351 291730 . + . ID=Physo135282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370051;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 290351 291730 . + . ID=Physo135282;Parent=Physo135282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 290351 291730 . + 0 ID=Physo135282;Parent=Physo135282;rank=1 scaffold_37 . exon 290351 291730 . + . ID=Physo135282.1;Parent=Physo135282;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 291850 292940 . - . ID=Physo135283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370052;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 291850 292940 . - . ID=Physo135283;Parent=Physo135283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 291850 292197 . - 0 ID=Physo135283;Parent=Physo135283;rank=4 scaffold_37 . exon 291850 292197 . - . ID=Physo135283.4;Parent=Physo135283;constitutive=1;rank=4 scaffold_37 . CDS 292265 292610 . - 0 ID=Physo135283;Parent=Physo135283;rank=3 scaffold_37 . exon 292265 292610 . - . ID=Physo135283.3;Parent=Physo135283;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 292688 292740 . - 0 ID=Physo135283;Parent=Physo135283;rank=2 scaffold_37 . exon 292688 292740 . - . ID=Physo135283.2;Parent=Physo135283;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_37 . CDS 292806 292922 . - 0 ID=Physo135283;Parent=Physo135283;rank=1 scaffold_37 . exon 292806 292940 . - . ID=Physo135283.1;Parent=Physo135283;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . biological_region 297210 297213 0.999 - . logic_name=eponine scaffold_37 . biological_region 301814 301818 0.999 + . logic_name=eponine scaffold_37 . biological_region 301839 301840 0.999 - . logic_name=eponine scaffold_37 . biological_region 301857 301862 0.999 + . logic_name=eponine scaffold_37 . repeat_region 301917 301945 . ? . description=trf scaffold_37 . repeat_region 303366 303391 . ? . description=trf scaffold_37 . biological_region 304937 304939 0.999 - . logic_name=eponine scaffold_37 . repeat_region 304950 304969 . ? . description=trf scaffold_37 ensembl protein_coding_gene 299719 300930 . - . ID=Physo135285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370054;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 299719 300930 . - . ID=Physo135285;Parent=Physo135285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 299719 300930 . - 0 ID=Physo135285;Parent=Physo135285;rank=1 scaffold_37 . exon 299719 300930 . - . ID=Physo135285.1;Parent=Physo135285;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 301374 301917 . - . ID=Physo135286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370055;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 301374 301917 . - . ID=Physo135286;Parent=Physo135286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 301374 301471 . - 0 ID=Physo135286;Parent=Physo135286;rank=3 scaffold_37 . exon 301374 301471 . - . ID=Physo135286.3;Parent=Physo135286;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 301559 301712 . - 0 ID=Physo135286;Parent=Physo135286;rank=2 scaffold_37 . exon 301559 301712 . - . ID=Physo135286.2;Parent=Physo135286;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_37 . CDS 301801 301917 . - 0 ID=Physo135286;Parent=Physo135286;rank=1 scaffold_37 . exon 301801 301917 . - . ID=Physo135286.1;Parent=Physo135286;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 302132 303024 . + . ID=Physo135287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370056;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 302132 303024 . + . ID=Physo135287;Parent=Physo135287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 302132 303024 . + . ID=Physo135287.1;Parent=Physo135287;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 302197 303024 . + 0 ID=Physo135287;Parent=Physo135287;rank=1 scaffold_37 ensembl protein_coding_gene 303216 304241 . + . ID=Physo135288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370057;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 303216 304241 . + . ID=Physo135288;Parent=Physo135288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 303216 304241 . + 0 ID=Physo135288;Parent=Physo135288;rank=1 scaffold_37 . exon 303216 304241 . + . ID=Physo135288.1;Parent=Physo135288;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 304321 305031 . - . ID=Physo135289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370058;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 304321 305031 . - . ID=Physo135289;Parent=Physo135289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 304321 305022 . - 0 ID=Physo135289;Parent=Physo135289;rank=1 scaffold_37 . exon 304321 305031 . - . ID=Physo135289.1;Parent=Physo135289;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 ensembl protein_coding_gene 305900 307420 . - . ID=Physo135290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370059;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 305900 307420 . - . ID=Physo135290;Parent=Physo135290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 305900 307420 . - 0 ID=Physo135290;Parent=Physo135290;rank=1 scaffold_37 . exon 305900 307420 . - . ID=Physo135290.1;Parent=Physo135290;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 297142 299283 . + . ID=Physo157190;biotype=protein_coding;external_name=C_scaffold_37000014;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 297142 299283 . + . ID=Physo157190;Parent=Physo157190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 297142 297661 . + 0 ID=Physo157190;Parent=Physo157190;rank=1 scaffold_37 . exon 297142 297661 . + . ID=Physo157190.1;Parent=Physo157190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 297701 298122 . + 0 ID=Physo157190;Parent=Physo157190;rank=2 scaffold_37 . exon 297701 298122 . + . ID=Physo157190.2;Parent=Physo157190;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 298171 299153 . + 0 ID=Physo157190;Parent=Physo157190;rank=3 scaffold_37 . exon 298171 299153 . + . ID=Physo157190.3;Parent=Physo157190;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_37 . CDS 299190 299283 . + 0 ID=Physo157190;Parent=Physo157190;rank=4 scaffold_37 . exon 299190 299283 . + . ID=Physo157190.4;Parent=Physo157190;constitutive=1;ensembl_phase=2;rank=4 scaffold_37 . repeat_region 312762 312769 . ? . description=dust scaffold_37 ensembl protein_coding_gene 308042 309761 . - . ID=Physo135291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370060;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 308042 309761 . - . ID=Physo135291;Parent=Physo135291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 308042 309761 . - . ID=Physo135291.1;Parent=Physo135291;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_37 . CDS 308211 309761 . - 0 ID=Physo135291;Parent=Physo135291;rank=1 scaffold_37 ensembl protein_coding_gene 310051 311661 . - . ID=Physo135292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370061;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 310051 311661 . - . ID=Physo135292;Parent=Physo135292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 310051 311661 . - 0 ID=Physo135292;Parent=Physo135292;rank=1 scaffold_37 . exon 310051 311661 . - . ID=Physo135292.1;Parent=Physo135292;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 311883 312500 . - . ID=Physo135293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370062;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 311883 312500 . - . ID=Physo135293;Parent=Physo135293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 311883 312500 . - 0 ID=Physo135293;Parent=Physo135293;rank=1 scaffold_37 . exon 311883 312500 . - . ID=Physo135293.1;Parent=Physo135293;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 312692 314360 . - . ID=Physo135294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370063;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 312692 314360 . - . ID=Physo135294;Parent=Physo135294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 312692 314360 . - . ID=Physo135294.1;Parent=Physo135294;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_37 . CDS 312801 314360 . - 0 ID=Physo135294;Parent=Physo135294;rank=1 scaffold_37 ensembl protein_coding_gene 315472 318789 . + . ID=Physo135295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370064;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 315472 318789 . + . ID=Physo135295;Parent=Physo135295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 315472 315644 . + 0 ID=Physo135295;Parent=Physo135295;rank=1 scaffold_37 . exon 315472 315644 . + . ID=Physo135295.1;Parent=Physo135295;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 315814 316289 . + 0 ID=Physo135295;Parent=Physo135295;rank=2 scaffold_37 . exon 315814 316289 . + . ID=Physo135295.2;Parent=Physo135295;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 316322 317433 . + 0 ID=Physo135295;Parent=Physo135295;rank=3 scaffold_37 . CDS 317937 318104 . + 0 ID=Physo135295;Parent=Physo135295;rank=4 scaffold_37 . CDS 318198 318468 . + 0 ID=Physo135295;Parent=Physo135295;rank=5 scaffold_37 . CDS 318553 318719 . + 0 ID=Physo135295;Parent=Physo135295;rank=6 scaffold_37 . CDS 318787 318789 . + 0 ID=Physo135295;Parent=Physo135295;rank=7 scaffold_37 . repeat_region 321409 321540 . ? . description=trf scaffold_37 ensembl protein_coding_gene 319299 320375 . - . ID=Physo108870;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_370010;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 319299 320375 . - . ID=Physo108870;Parent=Physo108870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 319299 320375 . - 0 ID=Physo108870;Parent=Physo108870;rank=1 scaffold_37 . exon 319299 320375 . - . ID=Physo108870.1;Parent=Physo108870;constitutive=1;rank=1 scaffold_37 . exon 316322 317433 . + . ID=Physo135295.3;Parent=Physo135295;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 . exon 317937 318104 . + . ID=Physo135295.4;Parent=Physo135295;constitutive=1;rank=4 scaffold_37 . exon 318198 318468 . + . ID=Physo135295.5;Parent=Physo135295;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_37 . exon 318553 318719 . + . ID=Physo135295.6;Parent=Physo135295;constitutive=1;ensembl_phase=1;rank=6 scaffold_37 . exon 318787 318789 . + . ID=Physo135295.7;Parent=Physo135295;constitutive=1;rank=7 scaffold_37 ensembl protein_coding_gene 323294 324518 . - . ID=Physo135299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370068;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 323294 324518 . - . ID=Physo135299;Parent=Physo135299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 323294 323648 . - 0 ID=Physo135299;Parent=Physo135299;rank=3 scaffold_37 . exon 323294 323648 . - . ID=Physo135299.3;Parent=Physo135299;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 323785 323988 . - 0 ID=Physo135299;Parent=Physo135299;rank=2 scaffold_37 . exon 323785 323988 . - . ID=Physo135299.2;Parent=Physo135299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_37 . CDS 324253 324518 . - 0 ID=Physo135299;Parent=Physo135299;rank=1 scaffold_37 . exon 324253 324518 . - . ID=Physo135299.1;Parent=Physo135299;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 324852 327805 . - . ID=Physo135300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370069;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 324852 327805 . - . ID=Physo135300;Parent=Physo135300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 324852 325375 . - 0 ID=Physo135300;Parent=Physo135300;rank=5 scaffold_37 . exon 324852 325375 . - . ID=Physo135300.5;Parent=Physo135300;constitutive=1;ensembl_phase=1;rank=5 scaffold_37 . CDS 325424 325464 . - 0 ID=Physo135300;Parent=Physo135300;rank=4 scaffold_37 . exon 325424 325464 . - . ID=Physo135300.4;Parent=Physo135300;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_37 . CDS 325767 325882 . - 0 ID=Physo135300;Parent=Physo135300;rank=3 scaffold_37 . exon 325767 325882 . - . ID=Physo135300.3;Parent=Physo135300;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_37 . CDS 325920 326422 . - 0 ID=Physo135300;Parent=Physo135300;rank=2 scaffold_37 . exon 325920 326422 . - . ID=Physo135300.2;Parent=Physo135300;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 326834 327773 . - 0 ID=Physo135300;Parent=Physo135300;rank=1 scaffold_37 . biological_region 326303 326304 0.999 + . logic_name=eponine scaffold_37 . repeat_region 326452 326460 . ? . description=dust scaffold_37 . biological_region 327588 327591 0.999 + . logic_name=eponine scaffold_37 . biological_region 328575 328576 0.999 - . logic_name=eponine scaffold_37 . biological_region 328629 328633 0.999 + . logic_name=eponine scaffold_37 . biological_region 328907 328909 0.999 + . logic_name=eponine scaffold_37 . biological_region 329263 329268 0.999 + . logic_name=eponine scaffold_37 . repeat_region 332368 332387 . ? . description=dust scaffold_37 . repeat_region 334311 334322 . ? . description=dust scaffold_37 . repeat_region 334387 334394 . ? . description=dust scaffold_37 . biological_region 334415 334420 0.999 + . logic_name=eponine scaffold_37 . repeat_region 335064 335072 . ? . description=dust scaffold_37 . biological_region 335832 335834 0.999 + . logic_name=eponine scaffold_37 . exon 326834 327805 . - . ID=Physo135300.1;Parent=Physo135300;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_37 ensembl protein_coding_gene 328032 328605 . + . ID=Physo135301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370070;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 328032 328605 . + . ID=Physo135301;Parent=Physo135301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 328032 328605 . + . ID=Physo135301.1;Parent=Physo135301;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 328078 328605 . + 0 ID=Physo135301;Parent=Physo135301;rank=1 scaffold_37 ensembl protein_coding_gene 328973 329497 . + . ID=Physo135302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370071;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 328973 329497 . + . ID=Physo135302;Parent=Physo135302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 328973 329497 . + 0 ID=Physo135302;Parent=Physo135302;rank=1 scaffold_37 . exon 328973 329497 . + . ID=Physo135302.1;Parent=Physo135302;constitutive=1;rank=1 scaffold_37 . repeat_region 337346 337480 . ? . description=trf scaffold_37 . repeat_region 337369 337493 . ? . description=trf scaffold_37 . repeat_region 337430 337529 . ? . description=trf scaffold_37 . repeat_region 344063 344131 . ? . description=trf scaffold_37 . repeat_region 344370 344408 . ? . description=trf scaffold_37 ensembl protein_coding_gene 345681 346231 . - . ID=Physo135303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370072;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 345681 346231 . - . ID=Physo135303;Parent=Physo135303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 345681 345779 . - 0 ID=Physo135303;Parent=Physo135303;rank=4 scaffold_37 . exon 345681 345779 . - . ID=Physo135303.4;Parent=Physo135303;constitutive=1;rank=4 scaffold_37 . CDS 345800 345900 . - 0 ID=Physo135303;Parent=Physo135303;rank=3 scaffold_37 . exon 345800 345900 . - . ID=Physo135303.3;Parent=Physo135303;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 345958 346066 . - 0 ID=Physo135303;Parent=Physo135303;rank=2 scaffold_37 . exon 345958 346066 . - . ID=Physo135303.2;Parent=Physo135303;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_37 . CDS 346175 346231 . - 0 ID=Physo135303;Parent=Physo135303;rank=1 scaffold_37 . repeat_region 353324 353739 . + . description=Gypsy-1-I_PI-int scaffold_37 . exon 346175 346231 . - . ID=Physo135303.1;Parent=Physo135303;constitutive=1;rank=1 scaffold_37 . biological_region 356253 356253 0.999 + . logic_name=eponine scaffold_37 . biological_region 358742 358749 0.999 + . logic_name=eponine scaffold_37 . biological_region 359526 359530 0.999 + . logic_name=eponine scaffold_37 . repeat_region 359541 359564 . ? . description=dust scaffold_37 . biological_region 363113 363114 0.999 + . logic_name=eponine scaffold_37 . repeat_region 364005 364024 . ? . description=dust scaffold_37 . repeat_region 364223 364239 . ? . description=dust scaffold_37 ensembl protein_coding_gene 358138 359640 . - . ID=Physo135304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370073;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 358138 359640 . - . ID=Physo135304;Parent=Physo135304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 358138 359640 . - 0 ID=Physo135304;Parent=Physo135304;rank=1 scaffold_37 . exon 358138 359640 . - . ID=Physo135304.1;Parent=Physo135304;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 359833 362154 . - . ID=Physo135305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370074;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 359833 362154 . - . ID=Physo135305;Parent=Physo135305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 359833 362154 . - 0 ID=Physo135305;Parent=Physo135305;rank=1 scaffold_37 . exon 359833 362154 . - . ID=Physo135305.1;Parent=Physo135305;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 364331 365302 . - . ID=Physo135306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370075;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 364331 365302 . - . ID=Physo135306;Parent=Physo135306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 364331 365302 . - 0 ID=Physo135306;Parent=Physo135306;rank=1 scaffold_37 . exon 364331 365302 . - . ID=Physo135306.1;Parent=Physo135306;constitutive=1;rank=1 scaffold_37 . repeat_region 367310 367357 . ? . description=trf scaffold_37 ensembl protein_coding_gene 368538 370447 . - . ID=Physo135307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370076;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 368538 370447 . - . ID=Physo135307;Parent=Physo135307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 368538 368558 . - 0 ID=Physo135307;Parent=Physo135307;rank=3 scaffold_37 . exon 368538 368558 . - . ID=Physo135307.3;Parent=Physo135307;constitutive=1;rank=3 scaffold_37 . CDS 368584 369859 . - 0 ID=Physo135307;Parent=Physo135307;rank=2 scaffold_37 . exon 368584 369859 . - . ID=Physo135307.2;Parent=Physo135307;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 369948 370447 . - 0 ID=Physo135307;Parent=Physo135307;rank=1 scaffold_37 . exon 369948 370447 . - . ID=Physo135307.1;Parent=Physo135307;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 371539 372564 . - . ID=Physo135308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370077;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 371539 372564 . - . ID=Physo135308;Parent=Physo135308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 371539 371962 . - 0 ID=Physo135308;Parent=Physo135308;rank=2 scaffold_37 . exon 371539 371962 . - . ID=Physo135308.2;Parent=Physo135308;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 372032 372564 . - 0 ID=Physo135308;Parent=Physo135308;rank=1 scaffold_37 . exon 372032 372564 . - . ID=Physo135308.1;Parent=Physo135308;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 373143 374503 . + . ID=Physo135309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370078;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 373143 374503 . + . ID=Physo135309;Parent=Physo135309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 373143 373563 . + 0 ID=Physo135309;Parent=Physo135309;rank=1 scaffold_37 . exon 373143 373563 . + . ID=Physo135309.1;Parent=Physo135309;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 373620 374503 . + 0 ID=Physo135309;Parent=Physo135309;rank=2 scaffold_37 . exon 373620 374503 . + . ID=Physo135309.2;Parent=Physo135309;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . repeat_region 375970 375977 . ? . description=dust scaffold_37 . repeat_region 377397 377447 . ? . description=dust scaffold_37 . repeat_region 377946 377986 . ? . description=dust scaffold_37 . biological_region 378164 378166 0.999 + . logic_name=eponine scaffold_37 . biological_region 378466 378470 0.999 - . logic_name=eponine scaffold_37 . biological_region 380467 380468 0.999 + . logic_name=eponine scaffold_37 . biological_region 380765 380768 0.999 + . logic_name=eponine scaffold_37 . biological_region 381605 381608 0.999 + . logic_name=eponine scaffold_37 . biological_region 381686 381686 0.999 - . logic_name=eponine scaffold_37 . repeat_region 381693 381702 . ? . description=dust scaffold_37 . biological_region 382513 382515 0.999 - . logic_name=eponine scaffold_37 . biological_region 383315 383321 0.999 - . logic_name=eponine scaffold_37 . biological_region 383338 383343 0.999 - . logic_name=eponine scaffold_37 . biological_region 384829 384831 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 382135 382837 . - . ID=Physo108873;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_370013;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 382135 382837 . - . ID=Physo108873;Parent=Physo108873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 382135 382837 . - . ID=Physo108873.1;Parent=Physo108873;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 382349 382804 . - 0 ID=Physo108873;Parent=Physo108873;rank=1 scaffold_37 ensembl protein_coding_gene 376881 380246 . + . ID=Physo135310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370079;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 376881 380246 . + . ID=Physo135310;Parent=Physo135310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 376881 379241 . + 0 ID=Physo135310;Parent=Physo135310;rank=1 scaffold_37 . exon 376881 379241 . + . ID=Physo135310.1;Parent=Physo135310;constitutive=1;rank=1 scaffold_37 . CDS 379726 380160 . + 0 ID=Physo135310;Parent=Physo135310;rank=2 scaffold_37 . exon 379726 380160 . + . ID=Physo135310.2;Parent=Physo135310;constitutive=1;rank=2 scaffold_37 . CDS 380202 380246 . + 0 ID=Physo135310;Parent=Physo135310;rank=3 scaffold_37 . exon 380202 380246 . + . ID=Physo135310.3;Parent=Physo135310;constitutive=1;rank=3 scaffold_37 ensembl protein_coding_gene 380455 381859 . - . ID=Physo135311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370080;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 380455 381859 . - . ID=Physo135311;Parent=Physo135311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 380455 381444 . - 0 ID=Physo135311;Parent=Physo135311;rank=2 scaffold_37 . exon 380455 381444 . - . ID=Physo135311.2;Parent=Physo135311;constitutive=1;rank=2 scaffold_37 . CDS 381521 381667 . - 0 ID=Physo135311;Parent=Physo135311;rank=1 scaffold_37 . exon 381521 381859 . - . ID=Physo135311.1;Parent=Physo135311;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 ensembl protein_coding_gene 383151 384140 . - . ID=Physo135313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370082;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 383151 384140 . - . ID=Physo135313;Parent=Physo135313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 383151 383431 . - 0 ID=Physo135313;Parent=Physo135313;rank=4 scaffold_37 . exon 383151 383431 . - . ID=Physo135313.4;Parent=Physo135313;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 383507 383581 . - 0 ID=Physo135313;Parent=Physo135313;rank=3 scaffold_37 . exon 383507 383581 . - . ID=Physo135313.3;Parent=Physo135313;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_37 . CDS 383658 383993 . - 0 ID=Physo135313;Parent=Physo135313;rank=2 scaffold_37 . exon 383658 383993 . - . ID=Physo135313.2;Parent=Physo135313;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 384101 384140 . - 0 ID=Physo135313;Parent=Physo135313;rank=1 scaffold_37 . exon 384101 384140 . - . ID=Physo135313.1;Parent=Physo135313;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 384428 385502 . + . ID=Physo135314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370083;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 384428 385502 . + . ID=Physo135314;Parent=Physo135314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 384428 384521 . + . ID=Physo135314.1;Parent=Physo135314;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 384435 384521 . + 0 ID=Physo135314;Parent=Physo135314;rank=1 scaffold_37 . CDS 384629 384835 . + 0 ID=Physo135314;Parent=Physo135314;rank=2 scaffold_37 . exon 384629 384835 . + . ID=Physo135314.2;Parent=Physo135314;constitutive=1;rank=2 scaffold_37 . CDS 384922 385004 . + 0 ID=Physo135314;Parent=Physo135314;rank=3 scaffold_37 . exon 384922 385004 . + . ID=Physo135314.3;Parent=Physo135314;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_37 . CDS 385089 385177 . + 0 ID=Physo135314;Parent=Physo135314;rank=4 scaffold_37 . exon 385089 385177 . + . ID=Physo135314.4;Parent=Physo135314;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_37 . CDS 385273 385448 . + 0 ID=Physo135314;Parent=Physo135314;rank=5 scaffold_37 . exon 385273 385502 . + . ID=Physo135314.5;Parent=Physo135314;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_37 . repeat_region 385951 385996 . ? . description=trf scaffold_37 ensembl protein_coding_gene 385950 386492 . - . ID=Physo135315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370084;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 385950 386492 . - . ID=Physo135315;Parent=Physo135315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 385950 386114 . - 0 ID=Physo135315;Parent=Physo135315;rank=2 scaffold_37 . exon 385950 386114 . - . ID=Physo135315.2;Parent=Physo135315;constitutive=1;rank=2 scaffold_37 . CDS 386199 386492 . - 0 ID=Physo135315;Parent=Physo135315;rank=1 scaffold_37 . exon 386199 386492 . - . ID=Physo135315.1;Parent=Physo135315;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 387532 388107 . + . ID=Physo135316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370085;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 387532 388107 . + . ID=Physo135316;Parent=Physo135316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 387532 388107 . + 0 ID=Physo135316;Parent=Physo135316;rank=1 scaffold_37 . exon 387532 388107 . + . ID=Physo135316.1;Parent=Physo135316;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 388706 389884 . + . ID=Physo135317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370086;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 388706 389884 . + . ID=Physo135317;Parent=Physo135317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 388706 389884 . + 0 ID=Physo135317;Parent=Physo135317;rank=1 scaffold_37 . exon 388706 389884 . + . ID=Physo135317.1;Parent=Physo135317;constitutive=1;rank=1 scaffold_37 . repeat_region 394248 398011 . ? . description=dust scaffold_37 . repeat_region 398040 398047 . ? . description=dust scaffold_37 . repeat_region 398085 398097 . ? . description=dust scaffold_37 . biological_region 402772 402773 0.999 + . logic_name=eponine scaffold_37 . biological_region 402792 402794 0.999 - . logic_name=eponine scaffold_37 . biological_region 402809 402811 0.999 + . logic_name=eponine scaffold_37 . biological_region 402936 402939 0.999 + . logic_name=eponine scaffold_37 . biological_region 402963 402965 0.999 - . logic_name=eponine scaffold_37 . biological_region 403000 403004 0.999 - . logic_name=eponine scaffold_37 . repeat_region 403536 404913 . + . description=GypsyPi-1c_I-int scaffold_37 . biological_region 404867 404870 0.999 + . logic_name=eponine scaffold_37 . repeat_region 405276 406125 . ? . description=dust scaffold_37 ensembl protein_coding_gene 401736 405178 . + . ID=Physo135318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370087;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 401736 405178 . + . ID=Physo135318;Parent=Physo135318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 401736 401829 . + 0 ID=Physo135318;Parent=Physo135318;rank=1 scaffold_37 . exon 401736 401829 . + . ID=Physo135318.1;Parent=Physo135318;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 402009 402316 . + 0 ID=Physo135318;Parent=Physo135318;rank=2 scaffold_37 . exon 402009 402316 . + . ID=Physo135318.2;Parent=Physo135318;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 402357 402481 . + 0 ID=Physo135318;Parent=Physo135318;rank=3 scaffold_37 . exon 402357 402481 . + . ID=Physo135318.3;Parent=Physo135318;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_37 . CDS 402516 402550 . + 0 ID=Physo135318;Parent=Physo135318;rank=4 scaffold_37 . exon 402516 402550 . + . ID=Physo135318.4;Parent=Physo135318;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_37 . CDS 402950 404269 . + 0 ID=Physo135318;Parent=Physo135318;rank=5 scaffold_37 . exon 402950 404269 . + . ID=Physo135318.5;Parent=Physo135318;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_37 . CDS 404383 405121 . + 0 ID=Physo135318;Parent=Physo135318;rank=6 scaffold_37 . exon 404383 405121 . + . ID=Physo135318.6;Parent=Physo135318;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_37 . CDS 405142 405178 . + 0 ID=Physo135318;Parent=Physo135318;rank=7 scaffold_37 . exon 405142 405178 . + . ID=Physo135318.7;Parent=Physo135318;constitutive=1;ensembl_phase=2;rank=7 scaffold_37 . repeat_region 407717 407742 . ? . description=trf scaffold_37 ensembl protein_coding_gene 410644 415685 . - . ID=Physo135319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370088;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 410644 415685 . - . ID=Physo135319;Parent=Physo135319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 410644 411134 . - 0 ID=Physo135319;Parent=Physo135319;rank=7 scaffold_37 . exon 410644 411134 . - . ID=Physo135319.7;Parent=Physo135319;constitutive=1;ensembl_phase=1;rank=7 scaffold_37 . CDS 411207 411281 . - 0 ID=Physo135319;Parent=Physo135319;rank=6 scaffold_37 . exon 411207 411281 . - . ID=Physo135319.6;Parent=Physo135319;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_37 . CDS 411310 411356 . - 0 ID=Physo135319;Parent=Physo135319;rank=5 scaffold_37 . exon 411310 411356 . - . ID=Physo135319.5;Parent=Physo135319;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_37 . CDS 411410 413155 . - 0 ID=Physo135319;Parent=Physo135319;rank=4 scaffold_37 . exon 411410 413155 . - . ID=Physo135319.4;Parent=Physo135319;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_37 . CDS 413414 414163 . - 0 ID=Physo135319;Parent=Physo135319;rank=3 scaffold_37 . exon 413414 414163 . - . ID=Physo135319.3;Parent=Physo135319;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_37 . CDS 414595 415229 . - 0 ID=Physo135319;Parent=Physo135319;rank=2 scaffold_37 . exon 414595 415229 . - . ID=Physo135319.2;Parent=Physo135319;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_37 . CDS 415299 415685 . - 0 ID=Physo135319;Parent=Physo135319;rank=1 scaffold_37 . repeat_region 421719 421728 . ? . description=dust scaffold_37 . repeat_region 421814 421825 . ? . description=dust scaffold_37 . biological_region 424854 424857 0.999 - . logic_name=eponine scaffold_37 . exon 415299 415685 . - . ID=Physo135319.1;Parent=Physo135319;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 424740 425795 . + . ID=Physo135320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370089;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 424740 425795 . + . ID=Physo135320;Parent=Physo135320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 424740 425795 . + 0 ID=Physo135320;Parent=Physo135320;rank=1 scaffold_37 . exon 424740 425795 . + . ID=Physo135320.1;Parent=Physo135320;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 431783 432676 . + . ID=Physo157193;biotype=protein_coding;external_name=C_scaffold_37000017;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 431783 432676 . + . ID=Physo157193;Parent=Physo157193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 431783 431828 . + 0 ID=Physo157193;Parent=Physo157193;rank=1 scaffold_37 . exon 431783 431828 . + . ID=Physo157193.1;Parent=Physo157193;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 431989 432034 . + 0 ID=Physo157193;Parent=Physo157193;rank=2 scaffold_37 . exon 431989 432034 . + . ID=Physo157193.2;Parent=Physo157193;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_37 . CDS 432188 432426 . + 0 ID=Physo157193;Parent=Physo157193;rank=3 scaffold_37 . exon 432188 432426 . + . ID=Physo157193.3;Parent=Physo157193;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 432654 432676 . + 0 ID=Physo157193;Parent=Physo157193;rank=4 scaffold_37 . exon 432654 432676 . + . ID=Physo157193.4;Parent=Physo157193;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . biological_region 435010 435012 0.999 + . logic_name=eponine scaffold_37 . biological_region 435096 435097 0.999 - . logic_name=eponine scaffold_37 . repeat_region 436191 436204 . ? . description=dust scaffold_37 . biological_region 436420 436424 0.999 - . logic_name=eponine scaffold_37 . repeat_region 440197 440242 . ? . description=trf scaffold_37 . repeat_region 442736 442788 . ? . description=dust scaffold_37 . repeat_region 442762 442784 . ? . description=trf scaffold_37 . biological_region 444419 444422 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 434964 436877 . + . ID=Physo135322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370091;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 434964 436877 . + . ID=Physo135322;Parent=Physo135322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 434964 436051 . + 0 ID=Physo135322;Parent=Physo135322;rank=1 scaffold_37 . exon 434964 436051 . + . ID=Physo135322.1;Parent=Physo135322;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 436250 436877 . + 0 ID=Physo135322;Parent=Physo135322;rank=2 scaffold_37 . exon 436250 436877 . + . ID=Physo135322.2;Parent=Physo135322;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 ensembl protein_coding_gene 436933 439393 . - . ID=Physo135323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370092;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 436933 439393 . - . ID=Physo135323;Parent=Physo135323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 436933 438388 . - 0 ID=Physo135323;Parent=Physo135323;rank=4 scaffold_37 . exon 436933 438388 . - . ID=Physo135323.4;Parent=Physo135323;constitutive=1;ensembl_phase=2;rank=4 scaffold_37 . CDS 438458 438583 . - 0 ID=Physo135323;Parent=Physo135323;rank=3 scaffold_37 . exon 438458 438583 . - . ID=Physo135323.3;Parent=Physo135323;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_37 . CDS 438660 438794 . - 0 ID=Physo135323;Parent=Physo135323;rank=2 scaffold_37 . exon 438660 438794 . - . ID=Physo135323.2;Parent=Physo135323;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_37 . CDS 438861 439393 . - 0 ID=Physo135323;Parent=Physo135323;rank=1 scaffold_37 . exon 438861 439393 . - . ID=Physo135323.1;Parent=Physo135323;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 440742 441707 . - . ID=Physo135325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370094;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 440742 441707 . - . ID=Physo135325;Parent=Physo135325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 440742 440989 . - . ID=Physo135325.6;Parent=Physo135325;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_37 . CDS 440796 440989 . - 0 ID=Physo135325;Parent=Physo135325;rank=6 scaffold_37 . CDS 441080 441119 . - 0 ID=Physo135325;Parent=Physo135325;rank=5 scaffold_37 . exon 441080 441119 . - . ID=Physo135325.5;Parent=Physo135325;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_37 . CDS 441195 441272 . - 0 ID=Physo135325;Parent=Physo135325;rank=4 scaffold_37 . exon 441195 441272 . - . ID=Physo135325.4;Parent=Physo135325;constitutive=1;rank=4 scaffold_37 . CDS 441342 441440 . - 0 ID=Physo135325;Parent=Physo135325;rank=3 scaffold_37 . exon 441342 441440 . - . ID=Physo135325.3;Parent=Physo135325;constitutive=1;rank=3 scaffold_37 . CDS 441512 441553 . - 0 ID=Physo135325;Parent=Physo135325;rank=2 scaffold_37 . exon 441512 441553 . - . ID=Physo135325.2;Parent=Physo135325;constitutive=1;rank=2 scaffold_37 . CDS 441705 441707 . - 0 ID=Physo135325;Parent=Physo135325;rank=1 scaffold_37 . exon 441705 441707 . - . ID=Physo135325.1;Parent=Physo135325;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 442400 443045 . + . ID=Physo135326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370095;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 442400 443045 . + . ID=Physo135326;Parent=Physo135326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 442400 443045 . + . ID=Physo135326.1;Parent=Physo135326;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 442412 442720 . + 0 ID=Physo135326;Parent=Physo135326;rank=1 scaffold_37 ensembl protein_coding_gene 443125 443723 . - . ID=Physo135327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370096;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 443125 443723 . - . ID=Physo135327;Parent=Physo135327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 443125 443306 . - 0 ID=Physo135327;Parent=Physo135327;rank=2 scaffold_37 . exon 443125 443306 . - . ID=Physo135327.2;Parent=Physo135327;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 443387 443723 . - 0 ID=Physo135327;Parent=Physo135327;rank=1 scaffold_37 . exon 443387 443723 . - . ID=Physo135327.1;Parent=Physo135327;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 443974 445736 . - . ID=Physo135328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370097;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 443974 445736 . - . ID=Physo135328;Parent=Physo135328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 443974 445736 . - . ID=Physo135328.1;Parent=Physo135328;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_37 . CDS 444000 445736 . - 0 ID=Physo135328;Parent=Physo135328;rank=1 scaffold_37 ensembl protein_coding_gene 439964 440527 . + . ID=Physo157197;biotype=protein_coding;external_name=C_scaffold_37000021;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 439964 440527 . + . ID=Physo157197;Parent=Physo157197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 439964 439988 . + 0 ID=Physo157197;Parent=Physo157197;rank=1 scaffold_37 . exon 439964 439988 . + . ID=Physo157197.1;Parent=Physo157197;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 440064 440527 . + 0 ID=Physo157197;Parent=Physo157197;rank=2 scaffold_37 . exon 440064 440527 . + . ID=Physo157197.2;Parent=Physo157197;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . repeat_region 453536 453756 . + . description=(CGA)n scaffold_37 ensembl protein_coding_gene 453509 454384 . + . ID=Physo135329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370098;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 453509 454384 . + . ID=Physo135329;Parent=Physo135329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 453509 453809 . + 0 ID=Physo135329;Parent=Physo135329;rank=1 scaffold_37 . exon 453509 453809 . + . ID=Physo135329.1;Parent=Physo135329;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 454029 454384 . + 0 ID=Physo135329;Parent=Physo135329;rank=2 scaffold_37 . exon 454029 454384 . + . ID=Physo135329.2;Parent=Physo135329;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . repeat_region 457523 457561 . ? . description=trf scaffold_37 . repeat_region 457548 457576 . ? . description=trf scaffold_37 . biological_region 461193 461198 0.999 + . logic_name=eponine scaffold_37 . repeat_region 461339 461370 . ? . description=trf scaffold_37 . repeat_region 462244 462293 . ? . description=dust scaffold_37 . repeat_region 464471 464520 . ? . description=dust scaffold_37 ensembl protein_coding_gene 458501 458865 . - . ID=Physo135330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370099;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 458501 458865 . - . ID=Physo135330;Parent=Physo135330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 458501 458551 . - 0 ID=Physo135330;Parent=Physo135330;rank=2 scaffold_37 . exon 458501 458551 . - . ID=Physo135330.2;Parent=Physo135330;constitutive=1;rank=2 scaffold_37 . CDS 458608 458865 . - 0 ID=Physo135330;Parent=Physo135330;rank=1 scaffold_37 . exon 458608 458865 . - . ID=Physo135330.1;Parent=Physo135330;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 459719 462853 . + . ID=Physo135331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370100;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 459719 462853 . + . ID=Physo135331;Parent=Physo135331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 459719 460143 . + 0 ID=Physo135331;Parent=Physo135331;rank=1 scaffold_37 . exon 459719 460143 . + . ID=Physo135331.1;Parent=Physo135331;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 460166 460544 . + 0 ID=Physo135331;Parent=Physo135331;rank=2 scaffold_37 . exon 460166 460544 . + . ID=Physo135331.2;Parent=Physo135331;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 461188 461636 . + 0 ID=Physo135331;Parent=Physo135331;rank=3 scaffold_37 . exon 461188 461636 . + . ID=Physo135331.3;Parent=Physo135331;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_37 . CDS 461717 461818 . + 0 ID=Physo135331;Parent=Physo135331;rank=4 scaffold_37 . exon 461717 461818 . + . ID=Physo135331.4;Parent=Physo135331;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_37 . CDS 461879 462019 . + 0 ID=Physo135331;Parent=Physo135331;rank=5 scaffold_37 . exon 461879 462019 . + . ID=Physo135331.5;Parent=Physo135331;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_37 . CDS 462088 462213 . + 0 ID=Physo135331;Parent=Physo135331;rank=6 scaffold_37 . exon 462088 462213 . + . ID=Physo135331.6;Parent=Physo135331;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_37 . CDS 462417 462762 . + 0 ID=Physo135331;Parent=Physo135331;rank=7 scaffold_37 . exon 462417 462853 . + . ID=Physo135331.7;Parent=Physo135331;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_37 ensembl protein_coding_gene 462951 465609 . - . ID=Physo135332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370101;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 462951 465609 . - . ID=Physo135332;Parent=Physo135332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 462951 464422 . - 0 ID=Physo135332;Parent=Physo135332;rank=2 scaffold_37 . exon 462951 464422 . - . ID=Physo135332.2;Parent=Physo135332;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 465306 465609 . - 0 ID=Physo135332;Parent=Physo135332;rank=1 scaffold_37 . exon 465306 465609 . - . ID=Physo135332.1;Parent=Physo135332;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 ensembl protein_coding_gene 466463 470441 . + . ID=Physo135333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370102;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 466463 470441 . + . ID=Physo135333;Parent=Physo135333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 466463 466887 . + 0 ID=Physo135333;Parent=Physo135333;rank=1 scaffold_37 . exon 466463 466887 . + . ID=Physo135333.1;Parent=Physo135333;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 466910 467288 . + 0 ID=Physo135333;Parent=Physo135333;rank=2 scaffold_37 . exon 466910 467288 . + . ID=Physo135333.2;Parent=Physo135333;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 467932 468380 . + 0 ID=Physo135333;Parent=Physo135333;rank=3 scaffold_37 . exon 467932 468380 . + . ID=Physo135333.3;Parent=Physo135333;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_37 . CDS 468461 468562 . + 0 ID=Physo135333;Parent=Physo135333;rank=4 scaffold_37 . exon 468461 468562 . + . ID=Physo135333.4;Parent=Physo135333;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_37 . CDS 468623 468763 . + 0 ID=Physo135333;Parent=Physo135333;rank=5 scaffold_37 . exon 468623 468763 . + . ID=Physo135333.5;Parent=Physo135333;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_37 . CDS 468832 468957 . + 0 ID=Physo135333;Parent=Physo135333;rank=6 scaffold_37 . exon 468832 468957 . + . ID=Physo135333.6;Parent=Physo135333;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_37 . CDS 469042 470350 . + 0 ID=Physo135333;Parent=Physo135333;rank=7 scaffold_37 . exon 469042 470441 . + . ID=Physo135333.7;Parent=Physo135333;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_37 ensembl protein_coding_gene 470539 473050 . - . ID=Physo135334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370103;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 470539 473050 . - . ID=Physo135334;Parent=Physo135334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 470539 472105 . - 0 ID=Physo135334;Parent=Physo135334;rank=4 scaffold_37 . exon 470539 472105 . - . ID=Physo135334.4;Parent=Physo135334;constitutive=1;ensembl_phase=2;rank=4 scaffold_37 . CDS 472185 472250 . - 0 ID=Physo135334;Parent=Physo135334;rank=3 scaffold_37 . exon 472185 472250 . - . ID=Physo135334.3;Parent=Physo135334;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_37 . CDS 472327 472557 . - 0 ID=Physo135334;Parent=Physo135334;rank=2 scaffold_37 . exon 472327 472557 . - . ID=Physo135334.2;Parent=Physo135334;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_37 . CDS 472659 473050 . - 0 ID=Physo135334;Parent=Physo135334;rank=1 scaffold_37 . exon 472659 473050 . - . ID=Physo135334.1;Parent=Physo135334;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . repeat_region 474906 474916 . ? . description=dust scaffold_37 . repeat_region 475535 475554 . ? . description=trf scaffold_37 . biological_region 475558 475562 0.999 + . logic_name=eponine scaffold_37 . biological_region 475790 475792 0.999 - . logic_name=eponine scaffold_37 . repeat_region 478651 478670 . ? . description=trf scaffold_37 . repeat_region 481345 481353 . ? . description=dust scaffold_37 . biological_region 482081 482082 0.999 - . logic_name=eponine scaffold_37 . repeat_region 483537 483586 . ? . description=dust scaffold_37 ensembl protein_coding_gene 475007 475973 . + . ID=Physo135335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370104;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 475007 475973 . + . ID=Physo135335;Parent=Physo135335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 475007 475205 . + 0 ID=Physo135335;Parent=Physo135335;rank=1 scaffold_37 . exon 475007 475205 . + . ID=Physo135335.1;Parent=Physo135335;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 475274 475768 . + 0 ID=Physo135335;Parent=Physo135335;rank=2 scaffold_37 . exon 475274 475768 . + . ID=Physo135335.2;Parent=Physo135335;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 475966 475973 . + 0 ID=Physo135335;Parent=Physo135335;rank=3 scaffold_37 . exon 475966 475973 . + . ID=Physo135335.3;Parent=Physo135335;constitutive=1;ensembl_phase=1;rank=3 scaffold_37 ensembl protein_coding_gene 475989 477002 . - . ID=Physo135336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370105;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 475989 477002 . - . ID=Physo135336;Parent=Physo135336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 475989 476339 . - . ID=Physo135336.2;Parent=Physo135336;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_37 . CDS 476080 476339 . - 0 ID=Physo135336;Parent=Physo135336;rank=2 scaffold_37 . CDS 476418 477000 . - 0 ID=Physo135336;Parent=Physo135336;rank=1 scaffold_37 . exon 476418 477002 . - . ID=Physo135336.1;Parent=Physo135336;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_37 ensembl protein_coding_gene 477624 478638 . + . ID=Physo135337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370106;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 477624 478638 . + . ID=Physo135337;Parent=Physo135337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 477624 477951 . + 0 ID=Physo135337;Parent=Physo135337;rank=1 scaffold_37 . exon 477624 477951 . + . ID=Physo135337.1;Parent=Physo135337;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 477992 478638 . + 0 ID=Physo135337;Parent=Physo135337;rank=2 scaffold_37 . exon 477992 478638 . + . ID=Physo135337.2;Parent=Physo135337;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 ensembl protein_coding_gene 483633 484647 . + . ID=Physo135338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370107;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 483633 484647 . + . ID=Physo135338;Parent=Physo135338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 483633 483960 . + 0 ID=Physo135338;Parent=Physo135338;rank=1 scaffold_37 . exon 483633 483960 . + . ID=Physo135338.1;Parent=Physo135338;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 484001 484647 . + 0 ID=Physo135338;Parent=Physo135338;rank=2 scaffold_37 . exon 484001 484647 . + . ID=Physo135338.2;Parent=Physo135338;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . repeat_region 495398 495447 . ? . description=dust scaffold_37 . repeat_region 497830 497837 . ? . description=dust scaffold_37 . repeat_region 498039 498046 . ? . description=dust scaffold_37 . repeat_region 498148 498156 . ? . description=dust scaffold_37 . repeat_region 498813 498823 . ? . description=dust scaffold_37 . repeat_region 507991 508034 . ? . description=trf scaffold_37 . repeat_region 511320 511363 . ? . description=trf scaffold_37 ensembl protein_coding_gene 508561 508821 . + . ID=Physo116948;biotype=protein_coding;external_name=estExt_Genewise1.C_370028;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 508561 508821 . + . ID=Physo116948;Parent=Physo116948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 508561 508821 . + . ID=Physo116948.1;Parent=Physo116948;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 508603 508821 . + 0 ID=Physo116948;Parent=Physo116948;rank=1 scaffold_37 ensembl protein_coding_gene 510533 510793 . - . ID=Physo116951;biotype=protein_coding;external_name=estExt_Genewise1.C_370031;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 510533 510793 . - . ID=Physo116951;Parent=Physo116951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 510533 510751 . - 0 ID=Physo116951;Parent=Physo116951;rank=1 scaffold_37 . exon 510533 510793 . - . ID=Physo116951.1;Parent=Physo116951;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . biological_region 514337 514340 0.999 + . logic_name=eponine scaffold_37 . biological_region 514472 514473 0.999 - . logic_name=eponine scaffold_37 . repeat_region 517210 517234 . ? . description=dust scaffold_37 . biological_region 519759 519759 0.999 - . logic_name=eponine scaffold_37 . biological_region 520577 520580 0.999 + . logic_name=eponine scaffold_37 . biological_region 522181 522186 0.999 + . logic_name=eponine scaffold_37 . biological_region 522796 522802 0.999 - . logic_name=eponine scaffold_37 . biological_region 522812 522813 0.999 + . logic_name=eponine scaffold_37 . biological_region 522837 522839 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 516872 517471 . - . ID=Physo135339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370108;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 516872 517471 . - . ID=Physo135339;Parent=Physo135339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 516872 517471 . - 0 ID=Physo135339;Parent=Physo135339;rank=1 scaffold_37 . exon 516872 517471 . - . ID=Physo135339.1;Parent=Physo135339;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 519473 520938 . - . ID=Physo135340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370109;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 519473 520938 . - . ID=Physo135340;Parent=Physo135340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 519473 519876 . - 0 ID=Physo135340;Parent=Physo135340;rank=4 scaffold_37 . exon 519473 519876 . - . ID=Physo135340.4;Parent=Physo135340;constitutive=1;ensembl_phase=1;rank=4 scaffold_37 . CDS 519948 520206 . - 0 ID=Physo135340;Parent=Physo135340;rank=3 scaffold_37 . exon 519948 520206 . - . ID=Physo135340.3;Parent=Physo135340;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_37 . CDS 520348 520816 . - 0 ID=Physo135340;Parent=Physo135340;rank=2 scaffold_37 . exon 520348 520816 . - . ID=Physo135340.2;Parent=Physo135340;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 520892 520938 . - 0 ID=Physo135340;Parent=Physo135340;rank=1 scaffold_37 . exon 520892 520938 . - . ID=Physo135340.1;Parent=Physo135340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 ensembl protein_coding_gene 522019 523079 . - . ID=Physo135341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370110;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 522019 523079 . - . ID=Physo135341;Parent=Physo135341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 522019 523053 . - 0 ID=Physo135341;Parent=Physo135341;rank=1 scaffold_37 . exon 522019 523079 . - . ID=Physo135341.1;Parent=Physo135341;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . repeat_region 525631 525654 . ? . description=trf scaffold_37 . repeat_region 527628 527674 . ? . description=trf scaffold_37 . repeat_region 532607 532759 . ? . description=trf scaffold_37 ensembl protein_coding_gene 524547 525439 . + . ID=Physo135342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370111;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 524547 525439 . + . ID=Physo135342;Parent=Physo135342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 524547 524931 . + 0 ID=Physo135342;Parent=Physo135342;rank=1 scaffold_37 . exon 524547 524931 . + . ID=Physo135342.1;Parent=Physo135342;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 525010 525131 . + 0 ID=Physo135342;Parent=Physo135342;rank=2 scaffold_37 . exon 525010 525131 . + . ID=Physo135342.2;Parent=Physo135342;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 525209 525325 . + 0 ID=Physo135342;Parent=Physo135342;rank=3 scaffold_37 . exon 525209 525325 . + . ID=Physo135342.3;Parent=Physo135342;constitutive=1;rank=3 scaffold_37 . CDS 525407 525439 . + 0 ID=Physo135342;Parent=Physo135342;rank=4 scaffold_37 . exon 525407 525439 . + . ID=Physo135342.4;Parent=Physo135342;constitutive=1;rank=4 scaffold_37 . repeat_region 534224 534363 . ? . description=dust scaffold_37 . repeat_region 534713 534720 . ? . description=dust scaffold_37 . repeat_region 535922 535949 . ? . description=dust scaffold_37 . biological_region 536907 536907 0.999 + . logic_name=eponine scaffold_37 . biological_region 538816 538819 0.999 - . logic_name=eponine scaffold_37 . biological_region 539179 539184 0.999 - . logic_name=eponine scaffold_37 . biological_region 540315 540316 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 538264 539163 . + . ID=Physo108874;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_370014;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 538264 539163 . + . ID=Physo108874;Parent=Physo108874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 538264 539163 . + 0 ID=Physo108874;Parent=Physo108874;rank=1 scaffold_37 . exon 538264 539163 . + . ID=Physo108874.1;Parent=Physo108874;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 534868 535170 . + . ID=Physo135344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370113;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 534868 535170 . + . ID=Physo135344;Parent=Physo135344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 534868 535170 . + 0 ID=Physo135344;Parent=Physo135344;rank=1 scaffold_37 . exon 534868 535170 . + . ID=Physo135344.1;Parent=Physo135344;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 536683 538080 . + . ID=Physo135345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370114;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 536683 538080 . + . ID=Physo135345;Parent=Physo135345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 536683 536828 . + 0 ID=Physo135345;Parent=Physo135345;rank=1 scaffold_37 . exon 536683 536828 . + . ID=Physo135345.1;Parent=Physo135345;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 536933 537146 . + 0 ID=Physo135345;Parent=Physo135345;rank=2 scaffold_37 . exon 536933 537146 . + . ID=Physo135345.2;Parent=Physo135345;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 537225 537925 . + 0 ID=Physo135345;Parent=Physo135345;rank=3 scaffold_37 . exon 537225 537925 . + . ID=Physo135345.3;Parent=Physo135345;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_37 . CDS 538062 538080 . + 0 ID=Physo135345;Parent=Physo135345;rank=4 scaffold_37 . exon 538062 538080 . + . ID=Physo135345.4;Parent=Physo135345;constitutive=1;ensembl_phase=2;rank=4 scaffold_37 ensembl protein_coding_gene 539594 543524 . - . ID=Physo157205;biotype=protein_coding;external_name=C_scaffold_37000029;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 539594 543524 . - . ID=Physo157205;Parent=Physo157205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 539594 539602 . - 0 ID=Physo157205;Parent=Physo157205;rank=4 scaffold_37 . exon 539594 539602 . - . ID=Physo157205.4;Parent=Physo157205;constitutive=1;rank=4 scaffold_37 . CDS 539673 539774 . - 0 ID=Physo157205;Parent=Physo157205;rank=3 scaffold_37 . exon 539673 539774 . - . ID=Physo157205.3;Parent=Physo157205;constitutive=1;rank=3 scaffold_37 . CDS 539883 541190 . - 0 ID=Physo157205;Parent=Physo157205;rank=2 scaffold_37 . exon 539883 541190 . - . ID=Physo157205.2;Parent=Physo157205;constitutive=1;rank=2 scaffold_37 . CDS 541239 543524 . - 0 ID=Physo157205;Parent=Physo157205;rank=1 scaffold_37 . exon 541239 543524 . - . ID=Physo157205.1;Parent=Physo157205;constitutive=1;rank=1 scaffold_37 . repeat_region 547071 547099 . ? . description=trf scaffold_37 ensembl protein_coding_gene 547595 548261 . + . ID=Physo108875;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_370015;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 547595 548261 . + . ID=Physo108875;Parent=Physo108875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 547595 548261 . + . ID=Physo108875.1;Parent=Physo108875;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 547635 548054 . + 0 ID=Physo108875;Parent=Physo108875;rank=1 scaffold_37 ensembl protein_coding_gene 544490 545068 . + . ID=Physo135348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370117;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 544490 545068 . + . ID=Physo135348;Parent=Physo135348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 544490 545068 . + 0 ID=Physo135348;Parent=Physo135348;rank=1 scaffold_37 . exon 544490 545068 . + . ID=Physo135348.1;Parent=Physo135348;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 545858 546792 . + . ID=Physo135349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370118;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 545858 546792 . + . ID=Physo135349;Parent=Physo135349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 545858 546792 . + . ID=Physo135349.1;Parent=Physo135349;constitutive=1;ensembl_phase=-1;rank=1 scaffold_37 . CDS 545944 546792 . + 0 ID=Physo135349;Parent=Physo135349;rank=1 scaffold_37 . repeat_region 554208 554216 . ? . description=dust scaffold_37 . repeat_region 554347 554426 . + . description=(TATTG)n scaffold_37 . repeat_region 554371 554426 . ? . description=dust scaffold_37 . repeat_region 557967 558438 . - . description=Gypsy-2-I_PI-int scaffold_37 ensembl protein_coding_gene 554328 555730 . + . ID=Physo135351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370120;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 554328 555730 . + . ID=Physo135351;Parent=Physo135351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 554328 554346 . + 0 ID=Physo135351;Parent=Physo135351;rank=1 scaffold_37 . exon 554328 554346 . + . ID=Physo135351.1;Parent=Physo135351;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 554582 555549 . + 0 ID=Physo135351;Parent=Physo135351;rank=2 scaffold_37 . exon 554582 555549 . + . ID=Physo135351.2;Parent=Physo135351;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . CDS 555647 555730 . + 0 ID=Physo135351;Parent=Physo135351;rank=3 scaffold_37 . exon 555647 555730 . + . ID=Physo135351.3;Parent=Physo135351;constitutive=1;rank=3 scaffold_37 ensembl protein_coding_gene 561702 562130 . - . ID=Physo135352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370121;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 561702 562130 . - . ID=Physo135352;Parent=Physo135352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 561702 562130 . - 0 ID=Physo135352;Parent=Physo135352;rank=1 scaffold_37 . exon 561702 562130 . - . ID=Physo135352.1;Parent=Physo135352;constitutive=1;rank=1 scaffold_37 . repeat_region 568438 568464 . ? . description=trf scaffold_37 . biological_region 572255 572259 0.999 - . logic_name=eponine scaffold_37 . biological_region 572845 572851 0.999 - . logic_name=eponine scaffold_37 . biological_region 572902 572906 0.999 + . logic_name=eponine scaffold_37 . biological_region 573179 573181 0.999 + . logic_name=eponine scaffold_37 ensembl protein_coding_gene 571917 578112 . + . ID=Physo135353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370122;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 571917 578112 . + . ID=Physo135353;Parent=Physo135353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 571917 572953 . + 0 ID=Physo135353;Parent=Physo135353;rank=1 scaffold_37 . exon 571917 572953 . + . ID=Physo135353.1;Parent=Physo135353;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 573091 573553 . + 0 ID=Physo135353;Parent=Physo135353;rank=2 scaffold_37 . exon 573091 573553 . + . ID=Physo135353.2;Parent=Physo135353;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 . CDS 573591 574046 . + 0 ID=Physo135353;Parent=Physo135353;rank=3 scaffold_37 . CDS 574091 575444 . + 0 ID=Physo135353;Parent=Physo135353;rank=4 scaffold_37 . CDS 575696 575942 . + 0 ID=Physo135353;Parent=Physo135353;rank=5 scaffold_37 . CDS 575963 576407 . + 0 ID=Physo135353;Parent=Physo135353;rank=6 scaffold_37 . CDS 576511 577284 . + 0 ID=Physo135353;Parent=Physo135353;rank=7 scaffold_37 . CDS 577437 577537 . + 0 ID=Physo135353;Parent=Physo135353;rank=8 scaffold_37 . CDS 577779 578112 . + 0 ID=Physo135353;Parent=Physo135353;rank=9 scaffold_37 . repeat_region 574388 576677 . + . description=GypsyPi-1c_I-int scaffold_37 . repeat_region 581652 581660 . ? . description=dust scaffold_37 . exon 573591 574046 . + . ID=Physo135353.3;Parent=Physo135353;constitutive=1;rank=3 scaffold_37 . exon 574091 575444 . + . ID=Physo135353.4;Parent=Physo135353;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_37 . exon 575696 575942 . + . ID=Physo135353.5;Parent=Physo135353;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_37 . exon 575963 576407 . + . ID=Physo135353.6;Parent=Physo135353;constitutive=1;ensembl_phase=2;rank=6 scaffold_37 . exon 576511 577284 . + . ID=Physo135353.7;Parent=Physo135353;constitutive=1;rank=7 scaffold_37 . exon 577437 577537 . + . ID=Physo135353.8;Parent=Physo135353;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_37 . exon 577779 578112 . + . ID=Physo135353.9;Parent=Physo135353;constitutive=1;ensembl_phase=2;rank=9 scaffold_37 ensembl protein_coding_gene 579494 581162 . + . ID=Physo135354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370123;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 579494 581162 . + . ID=Physo135354;Parent=Physo135354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 579494 580483 . + 0 ID=Physo135354;Parent=Physo135354;rank=1 scaffold_37 . exon 579494 580483 . + . ID=Physo135354.1;Parent=Physo135354;constitutive=1;rank=1 scaffold_37 . CDS 580585 580769 . + 0 ID=Physo135354;Parent=Physo135354;rank=2 scaffold_37 . exon 580585 580769 . + . ID=Physo135354.2;Parent=Physo135354;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_37 . CDS 580850 581162 . + 0 ID=Physo135354;Parent=Physo135354;rank=3 scaffold_37 . exon 580850 581162 . + . ID=Physo135354.3;Parent=Physo135354;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 ensembl protein_coding_gene 581778 582521 . - . ID=Physo135355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370124;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 581778 582521 . - . ID=Physo135355;Parent=Physo135355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 581778 582521 . - 0 ID=Physo135355;Parent=Physo135355;rank=1 scaffold_37 . exon 581778 582521 . - . ID=Physo135355.1;Parent=Physo135355;constitutive=1;rank=1 scaffold_37 . biological_region 583487 583487 0.999 + . logic_name=eponine scaffold_37 . biological_region 583525 583527 0.999 - . logic_name=eponine scaffold_37 . biological_region 588679 588679 0.999 + . logic_name=eponine scaffold_37 . biological_region 588697 588698 0.999 + . logic_name=eponine scaffold_37 . biological_region 588794 588800 0.999 - . logic_name=eponine scaffold_37 . biological_region 590249 590255 0.999 + . logic_name=eponine scaffold_37 . biological_region 592405 592407 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 590514 594092 . - . ID=Physo135356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370125;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 590514 594092 . - . ID=Physo135356;Parent=Physo135356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 590514 590702 . - 0 ID=Physo135356;Parent=Physo135356;rank=7 scaffold_37 . exon 590514 590702 . - . ID=Physo135356.7;Parent=Physo135356;constitutive=1;rank=7 scaffold_37 . CDS 590800 591014 . - 0 ID=Physo135356;Parent=Physo135356;rank=6 scaffold_37 . exon 590800 591014 . - . ID=Physo135356.6;Parent=Physo135356;constitutive=1;ensembl_phase=1;rank=6 scaffold_37 . CDS 591090 591588 . - 0 ID=Physo135356;Parent=Physo135356;rank=5 scaffold_37 . exon 591090 591588 . - . ID=Physo135356.5;Parent=Physo135356;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_37 . CDS 591632 591874 . - 0 ID=Physo135356;Parent=Physo135356;rank=4 scaffold_37 . exon 591632 591874 . - . ID=Physo135356.4;Parent=Physo135356;constitutive=1;rank=4 scaffold_37 . CDS 591963 591999 . - 0 ID=Physo135356;Parent=Physo135356;rank=3 scaffold_37 . exon 591963 591999 . - . ID=Physo135356.3;Parent=Physo135356;constitutive=1;ensembl_phase=2;rank=3 scaffold_37 . CDS 592086 592804 . - 0 ID=Physo135356;Parent=Physo135356;rank=2 scaffold_37 . exon 592086 592804 . - . ID=Physo135356.2;Parent=Physo135356;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_37 . CDS 592833 594092 . - 0 ID=Physo135356;Parent=Physo135356;rank=1 scaffold_37 . exon 592833 594092 . - . ID=Physo135356.1;Parent=Physo135356;constitutive=1;rank=1 scaffold_37 . repeat_region 593095 593721 . - . description=GypsyPi-1c_I-int scaffold_37 . repeat_region 596718 596743 . ? . description=trf scaffold_37 . repeat_region 597002 597014 . ? . description=dust scaffold_37 . biological_region 605090 605092 0.999 - . logic_name=eponine scaffold_37 . biological_region 606860 606864 0.999 + . logic_name=eponine scaffold_37 . biological_region 606969 606973 0.999 - . logic_name=eponine scaffold_37 ensembl protein_coding_gene 606535 607580 . - . ID=Physo108876;biotype=protein_coding;description=Transcription factor BTF3-like protein [Source:UniProtKB/TrEMBL%3BAcc:F4ZVE3];external_name=estExt_fgenesh1_pm.C_370016;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 606535 607580 . - . ID=Physo108876;Parent=Physo108876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . exon 606535 607324 . - . ID=Physo108876.2;Parent=Physo108876;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_37 . CDS 606833 607321 . - 0 ID=Physo108876;Parent=Physo108876;rank=1 scaffold_37 . exon 607565 607580 . - . ID=Physo108876.1;Parent=Physo108876;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_37 ensembl protein_coding_gene 603223 604302 . + . ID=Physo135357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370126;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 603223 604302 . + . ID=Physo135357;Parent=Physo135357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 603223 604302 . + 0 ID=Physo135357;Parent=Physo135357;rank=1 scaffold_37 . exon 603223 604302 . + . ID=Physo135357.1;Parent=Physo135357;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 607752 609223 . - . ID=Physo135360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370129;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 607752 609223 . - . ID=Physo135360;Parent=Physo135360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 607752 607778 . - 0 ID=Physo135360;Parent=Physo135360;rank=2 scaffold_37 . exon 607752 607778 . - . ID=Physo135360.2;Parent=Physo135360;constitutive=1;rank=2 scaffold_37 . CDS 607856 609223 . - 0 ID=Physo135360;Parent=Physo135360;rank=1 scaffold_37 . exon 607856 609223 . - . ID=Physo135360.1;Parent=Physo135360;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 609510 610132 . + . ID=Physo135361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370130;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 609510 610132 . + . ID=Physo135361;Parent=Physo135361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 609510 609728 . + 0 ID=Physo135361;Parent=Physo135361;rank=1 scaffold_37 . exon 609510 609728 . + . ID=Physo135361.1;Parent=Physo135361;constitutive=1;rank=1 scaffold_37 . CDS 609824 610132 . + 0 ID=Physo135361;Parent=Physo135361;rank=2 scaffold_37 . exon 609824 610132 . + . ID=Physo135361.2;Parent=Physo135361;constitutive=1;rank=2 scaffold_37 ensembl protein_coding_gene 612298 613195 . + . ID=Physo135362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370131;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 612298 613195 . + . ID=Physo135362;Parent=Physo135362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 612298 612314 . + 0 ID=Physo135362;Parent=Physo135362;rank=1 scaffold_37 . exon 612298 612314 . + . ID=Physo135362.1;Parent=Physo135362;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_37 . CDS 612706 613195 . + 0 ID=Physo135362;Parent=Physo135362;rank=2 scaffold_37 . exon 612706 613195 . + . ID=Physo135362.2;Parent=Physo135362;constitutive=1;ensembl_phase=2;rank=2 scaffold_37 ensembl protein_coding_gene 604540 605678 . - . ID=Physo157207;biotype=protein_coding;external_name=C_scaffold_37000031;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 604540 605678 . - . ID=Physo157207;Parent=Physo157207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 604540 604785 . - 0 ID=Physo157207;Parent=Physo157207;rank=7 scaffold_37 . exon 604540 604785 . - . ID=Physo157207.7;Parent=Physo157207;constitutive=1;rank=7 scaffold_37 . CDS 604862 604943 . - 0 ID=Physo157207;Parent=Physo157207;rank=6 scaffold_37 . exon 604862 604943 . - . ID=Physo157207.6;Parent=Physo157207;constitutive=1;ensembl_phase=2;rank=6 scaffold_37 . CDS 605008 605151 . - 0 ID=Physo157207;Parent=Physo157207;rank=5 scaffold_37 . exon 605008 605151 . - . ID=Physo157207.5;Parent=Physo157207;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_37 . CDS 605218 605258 . - 0 ID=Physo157207;Parent=Physo157207;rank=4 scaffold_37 . exon 605218 605258 . - . ID=Physo157207.4;Parent=Physo157207;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_37 . CDS 605301 605381 . - 0 ID=Physo157207;Parent=Physo157207;rank=3 scaffold_37 . exon 605301 605381 . - . ID=Physo157207.3;Parent=Physo157207;constitutive=1;rank=3 scaffold_37 . CDS 605455 605520 . - 0 ID=Physo157207;Parent=Physo157207;rank=2 scaffold_37 . exon 605455 605520 . - . ID=Physo157207.2;Parent=Physo157207;constitutive=1;rank=2 scaffold_37 . CDS 605631 605678 . - 0 ID=Physo157207;Parent=Physo157207;rank=1 scaffold_37 . exon 605631 605678 . - . ID=Physo157207.1;Parent=Physo157207;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 605866 606217 . + . ID=Physo157209;biotype=protein_coding;external_name=C_scaffold_37000033;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 605866 606217 . + . ID=Physo157209;Parent=Physo157209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 605866 606055 . + 0 ID=Physo157209;Parent=Physo157209;rank=1 scaffold_37 . exon 605866 606055 . + . ID=Physo157209.1;Parent=Physo157209;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_37 . CDS 606135 606217 . + 0 ID=Physo157209;Parent=Physo157209;rank=2 scaffold_37 . exon 606135 606217 . + . ID=Physo157209.2;Parent=Physo157209;constitutive=1;ensembl_phase=1;rank=2 scaffold_37 . repeat_region 614173 614180 . ? . description=dust scaffold_37 . repeat_region 617357 617379 . ? . description=dust scaffold_37 . repeat_region 618089 618149 . ? . description=dust scaffold_37 . repeat_region 618153 618215 . ? . description=dust scaffold_37 . repeat_region 618154 618209 . ? . description=trf scaffold_37 . repeat_region 619241 619300 . ? . description=dust scaffold_37 . repeat_region 619305 619368 . ? . description=dust scaffold_37 . repeat_region 619313 619350 . ? . description=trf scaffold_37 . repeat_region 619313 619368 . ? . description=trf scaffold_37 . repeat_region 619551 620939 . ? . description=dust scaffold_37 . repeat_region 621155 621214 . ? . description=trf scaffold_37 . repeat_region 621161 621223 . ? . description=dust scaffold_37 . repeat_region 621227 621283 . ? . description=dust scaffold_37 . repeat_region 622305 622364 . ? . description=trf scaffold_37 . repeat_region 622313 622373 . ? . description=dust scaffold_37 . repeat_region 622377 622433 . ? . description=dust scaffold_37 ensembl protein_coding_gene 617908 618225 . + . ID=Physo135363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370132;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 617908 618225 . + . ID=Physo135363;Parent=Physo135363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 617908 618225 . + 0 ID=Physo135363;Parent=Physo135363;rank=1 scaffold_37 . exon 617908 618225 . + . ID=Physo135363.1;Parent=Physo135363;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 619058 619375 . + . ID=Physo135364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370133;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 619058 619375 . + . ID=Physo135364;Parent=Physo135364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 619058 619375 . + 0 ID=Physo135364;Parent=Physo135364;rank=1 scaffold_37 . exon 619058 619375 . + . ID=Physo135364.1;Parent=Physo135364;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 621152 621469 . - . ID=Physo135365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370134;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 621152 621469 . - . ID=Physo135365;Parent=Physo135365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 621152 621469 . - 0 ID=Physo135365;Parent=Physo135365;rank=1 scaffold_37 . exon 621152 621469 . - . ID=Physo135365.1;Parent=Physo135365;constitutive=1;rank=1 scaffold_37 ensembl protein_coding_gene 622302 622619 . - . ID=Physo135366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_370135;logic_name=jgi_physo1_1 scaffold_37 ensembl transcript 622302 622619 . - . ID=Physo135366;Parent=Physo135366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_37 . CDS 622302 622619 . - 0 ID=Physo135366;Parent=Physo135366;rank=1 scaffold_37 . exon 622302 622619 . - . ID=Physo135366.1;Parent=Physo135366;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_36 1 627778 scaffold_36 . biological_region 407 407 0.999 - . logic_name=eponine scaffold_36 . biological_region 708 719 0.999 + . logic_name=eponine scaffold_36 . biological_region 767 768 0.999 + . logic_name=eponine scaffold_36 . biological_region 824 828 0.999 - . logic_name=eponine scaffold_36 . biological_region 883 883 0.999 - . logic_name=eponine scaffold_36 . biological_region 1114 1116 0.999 - . logic_name=eponine scaffold_36 . repeat_region 1500 1800 . ? . description=dust scaffold_36 . repeat_region 2047 2054 . ? . description=dust scaffold_36 . repeat_region 2292 2309 . ? . description=dust scaffold_36 . repeat_region 2460 2591 . ? . description=trf scaffold_36 . repeat_region 2724 2773 . ? . description=dust scaffold_36 . biological_region 3122 3127 0.999 - . logic_name=eponine scaffold_36 . biological_region 3919 3919 0.999 + . logic_name=eponine scaffold_36 . repeat_region 4996 5003 . ? . description=dust scaffold_36 . repeat_region 5241 5258 . ? . description=dust scaffold_36 . repeat_region 5409 5540 . ? . description=trf scaffold_36 . biological_region 5948 5955 0.999 - . logic_name=eponine scaffold_36 . biological_region 6006 6010 0.999 + . logic_name=eponine scaffold_36 . biological_region 6061 6063 0.999 - . logic_name=eponine scaffold_36 . biological_region 6135 6139 0.999 + . logic_name=eponine scaffold_36 . biological_region 7996 7998 0.999 - . logic_name=eponine scaffold_36 . repeat_region 8253 8263 . ? . description=dust scaffold_36 . repeat_region 9459 9476 . ? . description=dust scaffold_36 ensembl snRNA_gene 2219 2395 . + . ID=EPrPSOG00000000121;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_36 ensembl snRNA 2219 2395 . + . ID=EPrPSOT00000000121;Parent=EPrPSOG00000000121;biotype=snRNA;logic_name=ncrna_eg scaffold_36 ensembl snRNA_gene 5634 5822 . + . ID=EPrPSOG00000000185;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_36 ensembl snRNA 5634 5822 . + . ID=EPrPSOT00000000185;Parent=EPrPSOG00000000185;biotype=snRNA;logic_name=ncrna_eg scaffold_36 ensembl snRNA_gene 5168 5344 . + . ID=EPrPSOG00000000202;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_36 ensembl snRNA 5168 5344 . + . ID=EPrPSOT00000000202;Parent=EPrPSOG00000000202;biotype=snRNA;logic_name=ncrna_eg scaffold_36 . exon 2219 2395 . + . ID=EPrPSOE00000000121;Parent=EPrPSOT00000000121;constitutive=1;rank=1 scaffold_36 . exon 5634 5822 . + . ID=EPrPSOE00000000185;Parent=EPrPSOT00000000185;constitutive=1;rank=1 scaffold_36 . exon 5168 5344 . + . ID=EPrPSOE00000000202;Parent=EPrPSOT00000000202;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 49 2091 . + . ID=Physo135085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360001;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 49 2091 . + . ID=Physo135085;Parent=Physo135085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 49 1489 . + . ID=Physo135085.1;Parent=Physo135085;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 221 1489 . + 0 ID=Physo135085;Parent=Physo135085;rank=1 scaffold_36 . CDS 1807 2091 . + 0 ID=Physo135085;Parent=Physo135085;rank=2 scaffold_36 . exon 1807 2091 . + . ID=Physo135085.2;Parent=Physo135085;constitutive=1;rank=2 scaffold_36 ensembl protein_coding_gene 2830 5040 . + . ID=Physo135086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360002;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 2830 5040 . + . ID=Physo135086;Parent=Physo135086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 2830 5040 . + 0 ID=Physo135086;Parent=Physo135086;rank=1 scaffold_36 . exon 2830 5040 . + . ID=Physo135086.1;Parent=Physo135086;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 6397 7228 . - . ID=Physo135087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360003;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 6397 7228 . - . ID=Physo135087;Parent=Physo135087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 6397 6928 . - 0 ID=Physo135087;Parent=Physo135087;rank=3 scaffold_36 . exon 6397 6928 . - . ID=Physo135087.3;Parent=Physo135087;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 7067 7092 . - 0 ID=Physo135087;Parent=Physo135087;rank=2 scaffold_36 . exon 7067 7092 . - . ID=Physo135087.2;Parent=Physo135087;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_36 . CDS 7160 7228 . - 0 ID=Physo135087;Parent=Physo135087;rank=1 scaffold_36 . exon 7160 7228 . - . ID=Physo135087.1;Parent=Physo135087;constitutive=1;rank=1 scaffold_36 ensembl tRNA_gene 17378 17448 . + . ID=EPrPSOG00000000258;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_36 ensembl transcript 17378 17448 . + . ID=EPrPSOT00000000258;Parent=EPrPSOG00000000258;biotype=tRNA;logic_name=ncrna_eg scaffold_36 . exon 17378 17448 . + . ID=EPrPSOE00000000258;Parent=EPrPSOT00000000258;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 17430 19690 . - . ID=Physo135088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360004;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 17430 19690 . - . ID=Physo135088;Parent=Physo135088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 17430 17621 . - 0 ID=Physo135088;Parent=Physo135088;rank=4 scaffold_36 . exon 17430 17621 . - . ID=Physo135088.4;Parent=Physo135088;constitutive=1;rank=4 scaffold_36 . CDS 17730 18731 . - 0 ID=Physo135088;Parent=Physo135088;rank=3 scaffold_36 . exon 17730 18731 . - . ID=Physo135088.3;Parent=Physo135088;constitutive=1;rank=3 scaffold_36 . CDS 18953 19419 . - 0 ID=Physo135088;Parent=Physo135088;rank=2 scaffold_36 . exon 18953 19419 . - . ID=Physo135088.2;Parent=Physo135088;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 19645 19690 . - 0 ID=Physo135088;Parent=Physo135088;rank=1 scaffold_36 . exon 19645 19690 . - . ID=Physo135088.1;Parent=Physo135088;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . repeat_region 20346 20383 . ? . description=trf scaffold_36 . repeat_region 21525 21550 . ? . description=trf scaffold_36 . repeat_region 21530 21550 . ? . description=dust scaffold_36 . repeat_region 22357 22394 . ? . description=trf scaffold_36 . biological_region 22989 22991 0.999 - . logic_name=eponine scaffold_36 . biological_region 23844 23848 0.999 + . logic_name=eponine scaffold_36 . repeat_region 24919 24931 . ? . description=dust scaffold_36 . biological_region 25902 25902 0.999 - . logic_name=eponine scaffold_36 . biological_region 25943 25949 0.999 - . logic_name=eponine scaffold_36 . biological_region 25967 25971 0.999 - . logic_name=eponine scaffold_36 . biological_region 26023 26025 0.999 + . logic_name=eponine scaffold_36 . biological_region 26421 26424 0.999 + . logic_name=eponine scaffold_36 . biological_region 26444 26448 0.999 - . logic_name=eponine scaffold_36 . biological_region 26825 26827 0.999 - . logic_name=eponine scaffold_36 . biological_region 27298 27302 0.999 - . logic_name=eponine scaffold_36 . biological_region 28173 28175 0.999 + . logic_name=eponine scaffold_36 . biological_region 28189 28193 0.999 - . logic_name=eponine scaffold_36 . biological_region 28217 28225 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 22677 23701 . + . ID=Physo116854;biotype=protein_coding;external_name=estExt_Genewise1.C_360109;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 22677 23701 . + . ID=Physo116854;Parent=Physo116854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 22677 22708 . + . ID=Physo116854.1;Parent=Physo116854;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 22703 22708 . + 0 ID=Physo116854;Parent=Physo116854;rank=1 scaffold_36 . CDS 22796 23458 . + 0 ID=Physo116854;Parent=Physo116854;rank=2 scaffold_36 . exon 22796 23701 . + . ID=Physo116854.2;Parent=Physo116854;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_36 ensembl protein_coding_gene 25445 26735 . + . ID=Physo135091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360007;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 25445 26735 . + . ID=Physo135091;Parent=Physo135091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 25445 25710 . + 0 ID=Physo135091;Parent=Physo135091;rank=1 scaffold_36 . exon 25445 25710 . + . ID=Physo135091.1;Parent=Physo135091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 26021 26630 . + 0 ID=Physo135091;Parent=Physo135091;rank=2 scaffold_36 . exon 26021 26735 . + . ID=Physo135091.2;Parent=Physo135091;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_36 ensembl protein_coding_gene 26948 28431 . + . ID=Physo135092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360008;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 26948 28431 . + . ID=Physo135092;Parent=Physo135092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 26948 27052 . + 0 ID=Physo135092;Parent=Physo135092;rank=1 scaffold_36 . exon 26948 27052 . + . ID=Physo135092.1;Parent=Physo135092;constitutive=1;rank=1 scaffold_36 . CDS 27136 27591 . + 0 ID=Physo135092;Parent=Physo135092;rank=2 scaffold_36 . exon 27136 27591 . + . ID=Physo135092.2;Parent=Physo135092;constitutive=1;rank=2 scaffold_36 . CDS 27741 28033 . + 0 ID=Physo135092;Parent=Physo135092;rank=3 scaffold_36 . exon 27741 28033 . + . ID=Physo135092.3;Parent=Physo135092;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 28075 28312 . + 0 ID=Physo135092;Parent=Physo135092;rank=4 scaffold_36 . exon 28075 28431 . + . ID=Physo135092.4;Parent=Physo135092;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_36 ensembl protein_coding_gene 28613 29947 . - . ID=Physo135093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360009;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 28613 29947 . - . ID=Physo135093;Parent=Physo135093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 28613 29186 . - . ID=Physo135093.4;Parent=Physo135093;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_36 . CDS 28620 29156 . - 0 ID=Physo135093;Parent=Physo135093;rank=1 scaffold_36 . exon 29264 29623 . - . ID=Physo135093.3;Parent=Physo135093;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_36 . exon 29695 29739 . - . ID=Physo135093.2;Parent=Physo135093;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_36 . exon 29881 29947 . - . ID=Physo135093.1;Parent=Physo135093;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_36 ensembl protein_coding_gene 34821 39616 . + . ID=Physo135094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360010;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 34821 39616 . + . ID=Physo135094;Parent=Physo135094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 34821 38046 . + 0 ID=Physo135094;Parent=Physo135094;rank=1 scaffold_36 . exon 34821 38046 . + . ID=Physo135094.1;Parent=Physo135094;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 38341 39442 . + 0 ID=Physo135094;Parent=Physo135094;rank=2 scaffold_36 . exon 38341 39442 . + . ID=Physo135094.2;Parent=Physo135094;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_36 . CDS 39541 39616 . + 0 ID=Physo135094;Parent=Physo135094;rank=3 scaffold_36 . exon 39541 39616 . + . ID=Physo135094.3;Parent=Physo135094;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . biological_region 40013 40021 0.999 - . logic_name=eponine scaffold_36 . biological_region 40042 40050 0.999 - . logic_name=eponine scaffold_36 . biological_region 40069 40077 0.999 + . logic_name=eponine scaffold_36 . biological_region 40073 40077 0.999 - . logic_name=eponine scaffold_36 . biological_region 40708 40708 0.999 + . logic_name=eponine scaffold_36 . biological_region 40864 40868 0.999 - . logic_name=eponine scaffold_36 . biological_region 40919 40920 0.999 + . logic_name=eponine scaffold_36 . biological_region 41327 41331 0.999 + . logic_name=eponine scaffold_36 . biological_region 41355 41357 0.999 + . logic_name=eponine scaffold_36 . biological_region 41360 41365 0.999 - . logic_name=eponine scaffold_36 . biological_region 41383 41383 0.999 + . logic_name=eponine scaffold_36 . biological_region 41497 41508 0.999 - . logic_name=eponine scaffold_36 . biological_region 41544 41545 0.999 - . logic_name=eponine scaffold_36 . biological_region 41554 41561 0.999 + . logic_name=eponine scaffold_36 . biological_region 41572 41577 0.999 - . logic_name=eponine scaffold_36 . biological_region 41703 41704 0.999 - . logic_name=eponine scaffold_36 . biological_region 41982 41983 0.999 - . logic_name=eponine scaffold_36 . biological_region 42046 42051 0.999 - . logic_name=eponine scaffold_36 . repeat_region 43428 43477 . ? . description=dust scaffold_36 . repeat_region 43915 43923 . ? . description=dust scaffold_36 . biological_region 44669 44673 0.999 - . logic_name=eponine scaffold_36 . biological_region 46009 46014 0.999 + . logic_name=eponine scaffold_36 . biological_region 46077 46078 0.999 + . logic_name=eponine scaffold_36 . biological_region 46356 46357 0.999 + . logic_name=eponine scaffold_36 . biological_region 46483 46488 0.999 + . logic_name=eponine scaffold_36 . biological_region 46499 46506 0.999 - . logic_name=eponine scaffold_36 . biological_region 46515 46516 0.999 + . logic_name=eponine scaffold_36 . biological_region 46552 46563 0.999 + . logic_name=eponine scaffold_36 . biological_region 46677 46677 0.999 - . logic_name=eponine scaffold_36 . biological_region 46695 46700 0.999 + . logic_name=eponine scaffold_36 . biological_region 46703 46705 0.999 - . logic_name=eponine scaffold_36 . biological_region 46729 46733 0.999 - . logic_name=eponine scaffold_36 . biological_region 47140 47141 0.999 - . logic_name=eponine scaffold_36 . biological_region 47192 47196 0.999 + . logic_name=eponine scaffold_36 . biological_region 47352 47352 0.999 - . logic_name=eponine scaffold_36 . biological_region 47983 47987 0.999 + . logic_name=eponine scaffold_36 . biological_region 47983 47991 0.999 - . logic_name=eponine scaffold_36 . biological_region 48010 48018 0.999 + . logic_name=eponine scaffold_36 . biological_region 48039 48047 0.999 + . logic_name=eponine scaffold_36 . repeat_region 48858 48865 . ? . description=dust scaffold_36 ensembl protein_coding_gene 40618 41388 . - . ID=Physo135095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360011;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 40618 41388 . - . ID=Physo135095;Parent=Physo135095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 40618 41388 . - 0 ID=Physo135095;Parent=Physo135095;rank=1 scaffold_36 . exon 40618 41388 . - . ID=Physo135095.1;Parent=Physo135095;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 46671 47441 . + . ID=Physo135096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360012;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 46671 47441 . + . ID=Physo135096;Parent=Physo135096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 46671 47441 . + 0 ID=Physo135096;Parent=Physo135096;rank=1 scaffold_36 . exon 46671 47441 . + . ID=Physo135096.1;Parent=Physo135096;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 49428 50135 . + . ID=Physo135097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360013;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 49428 50135 . + . ID=Physo135097;Parent=Physo135097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 49428 50135 . + 0 ID=Physo135097;Parent=Physo135097;rank=1 scaffold_36 . exon 49428 50135 . + . ID=Physo135097.1;Parent=Physo135097;constitutive=1;rank=1 scaffold_36 . repeat_region 59202 59239 . ? . description=trf scaffold_36 ensembl protein_coding_gene 51341 55199 . + . ID=Physo135098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360014;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 51341 55199 . + . ID=Physo135098;Parent=Physo135098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 51341 51912 . + 0 ID=Physo135098;Parent=Physo135098;rank=1 scaffold_36 . exon 51341 51912 . + . ID=Physo135098.1;Parent=Physo135098;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 52158 52760 . + 0 ID=Physo135098;Parent=Physo135098;rank=2 scaffold_36 . exon 52158 52760 . + . ID=Physo135098.2;Parent=Physo135098;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_36 . CDS 52820 55199 . + 0 ID=Physo135098;Parent=Physo135098;rank=3 scaffold_36 . exon 52820 55199 . + . ID=Physo135098.3;Parent=Physo135098;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 ensembl protein_coding_gene 56053 56676 . + . ID=Physo135099;biotype=protein_coding;description=PsAvh178 [Source:UniProtKB/TrEMBL%3BAcc:E0W517];external_name=estExt_fgenesh1_pg.C_360015;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 56053 56676 . + . ID=Physo135099;Parent=Physo135099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 56053 56676 . + 0 ID=Physo135099;Parent=Physo135099;rank=1 scaffold_36 . exon 56053 56676 . + . ID=Physo135099.1;Parent=Physo135099;constitutive=1;rank=1 scaffold_36 . biological_region 61293 61297 0.999 + . logic_name=eponine scaffold_36 . biological_region 61350 61351 0.999 - . logic_name=eponine scaffold_36 . repeat_region 65295 65354 . ? . description=dust scaffold_36 ensembl protein_coding_gene 64771 65214 . + . ID=Physo135100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360016;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 64771 65214 . + . ID=Physo135100;Parent=Physo135100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 64771 65214 . + 0 ID=Physo135100;Parent=Physo135100;rank=1 scaffold_36 . exon 64771 65214 . + . ID=Physo135100.1;Parent=Physo135100;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 67426 71459 . + . ID=Physo135101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360017;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 67426 71459 . + . ID=Physo135101;Parent=Physo135101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 67426 67539 . + 0 ID=Physo135101;Parent=Physo135101;rank=1 scaffold_36 . exon 67426 67539 . + . ID=Physo135101.1;Parent=Physo135101;constitutive=1;rank=1 scaffold_36 . CDS 67559 68952 . + 0 ID=Physo135101;Parent=Physo135101;rank=2 scaffold_36 . exon 67559 68952 . + . ID=Physo135101.2;Parent=Physo135101;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_36 . CDS 69082 69311 . + 0 ID=Physo135101;Parent=Physo135101;rank=3 scaffold_36 . exon 69082 69311 . + . ID=Physo135101.3;Parent=Physo135101;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 69390 69686 . + 0 ID=Physo135101;Parent=Physo135101;rank=4 scaffold_36 . exon 69390 69686 . + . ID=Physo135101.4;Parent=Physo135101;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 69778 70037 . + 0 ID=Physo135101;Parent=Physo135101;rank=5 scaffold_36 . CDS 70080 70319 . + 0 ID=Physo135101;Parent=Physo135101;rank=6 scaffold_36 . CDS 70371 70571 . + 0 ID=Physo135101;Parent=Physo135101;rank=7 scaffold_36 . CDS 70662 71459 . + 0 ID=Physo135101;Parent=Physo135101;rank=8 scaffold_36 . exon 69778 70037 . + . ID=Physo135101.5;Parent=Physo135101;constitutive=1;ensembl_phase=1;rank=5 scaffold_36 . exon 70080 70319 . + . ID=Physo135101.6;Parent=Physo135101;constitutive=1;rank=6 scaffold_36 . exon 70371 70571 . + . ID=Physo135101.7;Parent=Physo135101;constitutive=1;rank=7 scaffold_36 . exon 70662 71459 . + . ID=Physo135101.8;Parent=Physo135101;constitutive=1;rank=8 scaffold_36 ensembl protein_coding_gene 72983 73370 . + . ID=Physo135102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360018;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 72983 73370 . + . ID=Physo135102;Parent=Physo135102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 72983 73112 . + 0 ID=Physo135102;Parent=Physo135102;rank=1 scaffold_36 . exon 72983 73112 . + . ID=Physo135102.1;Parent=Physo135102;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 73192 73370 . + 0 ID=Physo135102;Parent=Physo135102;rank=2 scaffold_36 . exon 73192 73370 . + . ID=Physo135102.2;Parent=Physo135102;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 ensembl protein_coding_gene 74410 74838 . + . ID=Physo135103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360019;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 74410 74838 . + . ID=Physo135103;Parent=Physo135103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 74410 74838 . + 0 ID=Physo135103;Parent=Physo135103;rank=1 scaffold_36 . exon 74410 74838 . + . ID=Physo135103.1;Parent=Physo135103;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 74976 75356 . - . ID=Physo135104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360020;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 74976 75356 . - . ID=Physo135104;Parent=Physo135104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 74976 75356 . - 0 ID=Physo135104;Parent=Physo135104;rank=1 scaffold_36 . exon 74976 75356 . - . ID=Physo135104.1;Parent=Physo135104;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 75769 76976 . - . ID=Physo135105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360021;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 75769 76976 . - . ID=Physo135105;Parent=Physo135105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 75769 76097 . - 0 ID=Physo135105;Parent=Physo135105;rank=3 scaffold_36 . exon 75769 76097 . - . ID=Physo135105.3;Parent=Physo135105;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 76166 76360 . - 0 ID=Physo135105;Parent=Physo135105;rank=2 scaffold_36 . exon 76166 76360 . - . ID=Physo135105.2;Parent=Physo135105;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 76859 76976 . - 0 ID=Physo135105;Parent=Physo135105;rank=1 scaffold_36 . exon 76859 76976 . - . ID=Physo135105.1;Parent=Physo135105;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 78165 78593 . - . ID=Physo135106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360022;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 78165 78593 . - . ID=Physo135106;Parent=Physo135106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 78165 78593 . - 0 ID=Physo135106;Parent=Physo135106;rank=1 scaffold_36 . exon 78165 78593 . - . ID=Physo135106.1;Parent=Physo135106;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 79565 80056 . - . ID=Physo135107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360023;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 79565 80056 . - . ID=Physo135107;Parent=Physo135107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 79565 80056 . - 0 ID=Physo135107;Parent=Physo135107;rank=1 scaffold_36 . exon 79565 80056 . - . ID=Physo135107.1;Parent=Physo135107;constitutive=1;rank=1 scaffold_36 . biological_region 80340 80342 0.999 + . logic_name=eponine scaffold_36 . biological_region 80488 80491 0.999 - . logic_name=eponine scaffold_36 . biological_region 81453 81454 0.999 + . logic_name=eponine scaffold_36 . biological_region 82005 82009 0.999 - . logic_name=eponine scaffold_36 . biological_region 83901 83904 0.999 + . logic_name=eponine scaffold_36 . biological_region 83909 83912 0.999 + . logic_name=eponine scaffold_36 . biological_region 84335 84340 0.999 + . logic_name=eponine scaffold_36 . repeat_region 86368 86401 . ? . description=trf scaffold_36 . repeat_region 88916 88925 . ? . description=dust scaffold_36 ensembl protein_coding_gene 80769 81622 . - . ID=Physo135108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360024;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 80769 81622 . - . ID=Physo135108;Parent=Physo135108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 80769 81048 . - 0 ID=Physo135108;Parent=Physo135108;rank=2 scaffold_36 . exon 80769 81048 . - . ID=Physo135108.2;Parent=Physo135108;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 81153 81622 . - 0 ID=Physo135108;Parent=Physo135108;rank=1 scaffold_36 . exon 81153 81622 . - . ID=Physo135108.1;Parent=Physo135108;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 82704 83465 . + . ID=Physo135109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360025;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 82704 83465 . + . ID=Physo135109;Parent=Physo135109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 82704 83465 . + 0 ID=Physo135109;Parent=Physo135109;rank=1 scaffold_36 . exon 82704 83465 . + . ID=Physo135109.1;Parent=Physo135109;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 84046 86486 . + . ID=Physo135110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360026;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 84046 86486 . + . ID=Physo135110;Parent=Physo135110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 84046 84603 . + 0 ID=Physo135110;Parent=Physo135110;rank=1 scaffold_36 . exon 84046 84603 . + . ID=Physo135110.1;Parent=Physo135110;constitutive=1;rank=1 scaffold_36 . CDS 84816 85562 . + 0 ID=Physo135110;Parent=Physo135110;rank=2 scaffold_36 . exon 84816 85562 . + . ID=Physo135110.2;Parent=Physo135110;constitutive=1;rank=2 scaffold_36 . CDS 85763 85825 . + 0 ID=Physo135110;Parent=Physo135110;rank=3 scaffold_36 . exon 85763 85825 . + . ID=Physo135110.3;Parent=Physo135110;constitutive=1;rank=3 scaffold_36 . CDS 85911 86130 . + 0 ID=Physo135110;Parent=Physo135110;rank=4 scaffold_36 . exon 85911 86130 . + . ID=Physo135110.4;Parent=Physo135110;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_36 . CDS 86188 86486 . + 0 ID=Physo135110;Parent=Physo135110;rank=5 scaffold_36 . exon 86188 86486 . + . ID=Physo135110.5;Parent=Physo135110;constitutive=1;ensembl_phase=1;rank=5 scaffold_36 ensembl protein_coding_gene 92628 94374 . + . ID=Physo135111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360027;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 92628 94374 . + . ID=Physo135111;Parent=Physo135111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 92628 92791 . + 0 ID=Physo135111;Parent=Physo135111;rank=1 scaffold_36 . exon 92628 92791 . + . ID=Physo135111.1;Parent=Physo135111;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 92839 93600 . + 0 ID=Physo135111;Parent=Physo135111;rank=2 scaffold_36 . exon 92839 93600 . + . ID=Physo135111.2;Parent=Physo135111;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_36 . CDS 93748 93946 . + 0 ID=Physo135111;Parent=Physo135111;rank=3 scaffold_36 . exon 93748 93946 . + . ID=Physo135111.3;Parent=Physo135111;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 93988 94374 . + 0 ID=Physo135111;Parent=Physo135111;rank=4 scaffold_36 . exon 93988 94374 . + . ID=Physo135111.4;Parent=Physo135111;constitutive=1;rank=4 scaffold_36 ensembl protein_coding_gene 96868 97836 . - . ID=Physo135112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360028;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 96868 97836 . - . ID=Physo135112;Parent=Physo135112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 96868 97333 . - 0 ID=Physo135112;Parent=Physo135112;rank=3 scaffold_36 . exon 96868 97333 . - . ID=Physo135112.3;Parent=Physo135112;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 97367 97393 . - 0 ID=Physo135112;Parent=Physo135112;rank=2 scaffold_36 . exon 97367 97393 . - . ID=Physo135112.2;Parent=Physo135112;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_36 . CDS 97748 97836 . - 0 ID=Physo135112;Parent=Physo135112;rank=1 scaffold_36 . exon 97748 97836 . - . ID=Physo135112.1;Parent=Physo135112;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . biological_region 100398 100398 0.999 + . logic_name=eponine scaffold_36 . biological_region 102977 102980 0.999 - . logic_name=eponine scaffold_36 . repeat_region 104534 104550 . ? . description=dust scaffold_36 . biological_region 107485 107487 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 103857 104348 . - . ID=Physo135113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360029;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 103857 104348 . - . ID=Physo135113;Parent=Physo135113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 103857 104348 . - 0 ID=Physo135113;Parent=Physo135113;rank=1 scaffold_36 . exon 103857 104348 . - . ID=Physo135113.1;Parent=Physo135113;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 115566 116819 . + . ID=Physo135114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360030;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 115566 116819 . + . ID=Physo135114;Parent=Physo135114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 115566 115664 . + 0 ID=Physo135114;Parent=Physo135114;rank=1 scaffold_36 . exon 115566 115664 . + . ID=Physo135114.1;Parent=Physo135114;constitutive=1;rank=1 scaffold_36 . CDS 115758 116819 . + 0 ID=Physo135114;Parent=Physo135114;rank=2 scaffold_36 . exon 115758 116819 . + . ID=Physo135114.2;Parent=Physo135114;constitutive=1;rank=2 scaffold_36 ensembl protein_coding_gene 117060 119222 . + . ID=Physo135115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360031;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 117060 119222 . + . ID=Physo135115;Parent=Physo135115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 117060 117141 . + 0 ID=Physo135115;Parent=Physo135115;rank=1 scaffold_36 . exon 117060 117141 . + . ID=Physo135115.1;Parent=Physo135115;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 117232 117875 . + 0 ID=Physo135115;Parent=Physo135115;rank=2 scaffold_36 . exon 117232 117875 . + . ID=Physo135115.2;Parent=Physo135115;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 117995 118156 . + 0 ID=Physo135115;Parent=Physo135115;rank=3 scaffold_36 . exon 117995 118156 . + . ID=Physo135115.3;Parent=Physo135115;constitutive=1;rank=3 scaffold_36 . CDS 118208 118637 . + 0 ID=Physo135115;Parent=Physo135115;rank=4 scaffold_36 . exon 118208 118637 . + . ID=Physo135115.4;Parent=Physo135115;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_36 . CDS 118708 118719 . + 0 ID=Physo135115;Parent=Physo135115;rank=5 scaffold_36 . exon 118708 118719 . + . ID=Physo135115.5;Parent=Physo135115;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_36 . CDS 118798 119222 . + 0 ID=Physo135115;Parent=Physo135115;rank=6 scaffold_36 . exon 118798 119222 . + . ID=Physo135115.6;Parent=Physo135115;constitutive=1;ensembl_phase=1;rank=6 scaffold_36 . repeat_region 121490 121503 . ? . description=dust scaffold_36 . biological_region 127310 127312 0.999 + . logic_name=eponine scaffold_36 . repeat_region 127646 127681 . ? . description=trf scaffold_36 . repeat_region 127981 127988 . ? . description=dust scaffold_36 . repeat_region 129401 129408 . ? . description=dust scaffold_36 ensembl protein_coding_gene 125797 127556 . + . ID=Physo135116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360032;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 125797 127556 . + . ID=Physo135116;Parent=Physo135116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 125797 125815 . + 0 ID=Physo135116;Parent=Physo135116;rank=1 scaffold_36 . exon 125797 125815 . + . ID=Physo135116.1;Parent=Physo135116;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 126326 126365 . + 0 ID=Physo135116;Parent=Physo135116;rank=2 scaffold_36 . exon 126326 126365 . + . ID=Physo135116.2;Parent=Physo135116;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_36 . CDS 126594 127028 . + 0 ID=Physo135116;Parent=Physo135116;rank=3 scaffold_36 . exon 126594 127028 . + . ID=Physo135116.3;Parent=Physo135116;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_36 . CDS 127148 127556 . + 0 ID=Physo135116;Parent=Physo135116;rank=4 scaffold_36 . exon 127148 127556 . + . ID=Physo135116.4;Parent=Physo135116;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 ensembl protein_coding_gene 132384 132798 . - . ID=Physo135117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360033;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 132384 132798 . - . ID=Physo135117;Parent=Physo135117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 132384 132500 . - . ID=Physo135117.3;Parent=Physo135117;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_36 . CDS 132413 132500 . - 0 ID=Physo135117;Parent=Physo135117;rank=2 scaffold_36 . CDS 132529 132572 . - 0 ID=Physo135117;Parent=Physo135117;rank=1 scaffold_36 . exon 132529 132586 . - . ID=Physo135117.2;Parent=Physo135117;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_36 . exon 132668 132798 . - . ID=Physo135117.1;Parent=Physo135117;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_36 ensembl protein_coding_gene 135241 137676 . + . ID=Physo135119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360035;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 135241 137676 . + . ID=Physo135119;Parent=Physo135119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 135241 137676 . + 0 ID=Physo135119;Parent=Physo135119;rank=1 scaffold_36 . exon 135241 137676 . + . ID=Physo135119.1;Parent=Physo135119;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 138582 140317 . - . ID=Physo135120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360036;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 138582 140317 . - . ID=Physo135120;Parent=Physo135120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 138582 139398 . - 0 ID=Physo135120;Parent=Physo135120;rank=3 scaffold_36 . exon 138582 139398 . - . ID=Physo135120.3;Parent=Physo135120;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 139557 139979 . - 0 ID=Physo135120;Parent=Physo135120;rank=2 scaffold_36 . CDS 140160 140317 . - 0 ID=Physo135120;Parent=Physo135120;rank=1 scaffold_36 ensembl protein_coding_gene 133478 134740 . + . ID=Physo157160;biotype=protein_coding;external_name=C_scaffold_36000002;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 133478 134740 . + . ID=Physo157160;Parent=Physo157160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 133478 133645 . + 0 ID=Physo157160;Parent=Physo157160;rank=1 scaffold_36 . exon 133478 133645 . + . ID=Physo157160.1;Parent=Physo157160;constitutive=1;rank=1 scaffold_36 . CDS 133726 134680 . + 0 ID=Physo157160;Parent=Physo157160;rank=2 scaffold_36 . exon 133726 134680 . + . ID=Physo157160.2;Parent=Physo157160;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 134721 134740 . + 0 ID=Physo157160;Parent=Physo157160;rank=3 scaffold_36 . exon 134721 134740 . + . ID=Physo157160.3;Parent=Physo157160;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . repeat_region 143217 143226 . ? . description=dust scaffold_36 . repeat_region 144365 144373 . ? . description=dust scaffold_36 . repeat_region 145881 146027 . ? . description=trf scaffold_36 . repeat_region 146410 146420 . ? . description=dust scaffold_36 . repeat_region 147254 147261 . ? . description=dust scaffold_36 . biological_region 147539 147542 0.999 + . logic_name=eponine scaffold_36 . biological_region 148516 148519 0.999 - . logic_name=eponine scaffold_36 . biological_region 149113 149119 0.999 - . logic_name=eponine scaffold_36 . exon 139557 139979 . - . ID=Physo135120.2;Parent=Physo135120;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_36 . exon 140160 140317 . - . ID=Physo135120.1;Parent=Physo135120;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 147424 149697 . + . ID=Physo135121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360037;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 147424 149697 . + . ID=Physo135121;Parent=Physo135121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 147424 149697 . + 0 ID=Physo135121;Parent=Physo135121;rank=1 scaffold_36 . exon 147424 149697 . + . ID=Physo135121.1;Parent=Physo135121;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 155097 157424 . - . ID=Physo135122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360038;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 155097 157424 . - . ID=Physo135122;Parent=Physo135122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 155097 157424 . - 0 ID=Physo135122;Parent=Physo135122;rank=1 scaffold_36 . exon 155097 157424 . - . ID=Physo135122.1;Parent=Physo135122;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 158930 161257 . - . ID=Physo135123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360039;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 158930 161257 . - . ID=Physo135123;Parent=Physo135123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 158930 161257 . - 0 ID=Physo135123;Parent=Physo135123;rank=1 scaffold_36 . exon 158930 161257 . - . ID=Physo135123.1;Parent=Physo135123;constitutive=1;rank=1 scaffold_36 . biological_region 159509 159515 0.999 + . logic_name=eponine scaffold_36 . biological_region 160109 160112 0.999 + . logic_name=eponine scaffold_36 . biological_region 160928 160932 0.999 - . logic_name=eponine scaffold_36 . biological_region 161913 161914 0.999 + . logic_name=eponine scaffold_36 . repeat_region 162795 162821 . ? . description=trf scaffold_36 . biological_region 162809 162811 0.999 - . logic_name=eponine scaffold_36 . biological_region 162829 162831 0.999 + . logic_name=eponine scaffold_36 . biological_region 162839 162842 0.999 + . logic_name=eponine scaffold_36 . biological_region 162864 162867 0.999 + . logic_name=eponine scaffold_36 . biological_region 162960 162961 0.999 - . logic_name=eponine scaffold_36 . biological_region 163605 163609 0.999 + . logic_name=eponine scaffold_36 . repeat_region 163768 163941 . - . description=Sola3-2_PS scaffold_36 . biological_region 163792 163794 0.999 - . logic_name=eponine scaffold_36 . biological_region 164280 164282 0.999 - . logic_name=eponine scaffold_36 . biological_region 164815 164818 0.999 - . logic_name=eponine scaffold_36 . biological_region 164869 164869 0.999 - . logic_name=eponine scaffold_36 . biological_region 164987 164989 0.999 - . logic_name=eponine scaffold_36 . repeat_region 165894 165914 . ? . description=trf scaffold_36 . repeat_region 167110 167120 . ? . description=dust scaffold_36 . repeat_region 167202 167225 . ? . description=dust scaffold_36 ensembl protein_coding_gene 163123 164985 . - . ID=Physo135124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360040;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 163123 164985 . - . ID=Physo135124;Parent=Physo135124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 163123 164985 . - 0 ID=Physo135124;Parent=Physo135124;rank=1 scaffold_36 . exon 163123 164985 . - . ID=Physo135124.1;Parent=Physo135124;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 168660 170990 . - . ID=Physo157162;biotype=protein_coding;external_name=C_scaffold_36000004;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 168660 170990 . - . ID=Physo157162;Parent=Physo157162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 168660 168706 . - 0 ID=Physo157162;Parent=Physo157162;rank=3 scaffold_36 . exon 168660 168706 . - . ID=Physo157162.3;Parent=Physo157162;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 169040 169876 . - 0 ID=Physo157162;Parent=Physo157162;rank=2 scaffold_36 . exon 169040 169876 . - . ID=Physo157162.2;Parent=Physo157162;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 169904 170990 . - 0 ID=Physo157162;Parent=Physo157162;rank=1 scaffold_36 ensembl protein_coding_gene 179088 182403 . + . ID=Physo135126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360042;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 179088 182403 . + . ID=Physo135126;Parent=Physo135126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 179088 179136 . + 0 ID=Physo135126;Parent=Physo135126;rank=1 scaffold_36 . exon 179088 179136 . + . ID=Physo135126.1;Parent=Physo135126;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 179233 180038 . + 0 ID=Physo135126;Parent=Physo135126;rank=2 scaffold_36 . exon 179233 180038 . + . ID=Physo135126.2;Parent=Physo135126;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 180271 182403 . + 0 ID=Physo135126;Parent=Physo135126;rank=3 scaffold_36 . exon 169904 170990 . - . ID=Physo157162.1;Parent=Physo157162;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . repeat_region 185214 185227 . ? . description=dust scaffold_36 . repeat_region 188404 188783 . ? . description=dust scaffold_36 . exon 180271 182403 . + . ID=Physo135126.3;Parent=Physo135126;constitutive=1;rank=3 scaffold_36 ensembl protein_coding_gene 183219 184163 . - . ID=Physo135127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360043;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 183219 184163 . - . ID=Physo135127;Parent=Physo135127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 183219 184163 . - 0 ID=Physo135127;Parent=Physo135127;rank=1 scaffold_36 . exon 183219 184163 . - . ID=Physo135127.1;Parent=Physo135127;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 186136 188257 . - . ID=Physo135128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360044;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 186136 188257 . - . ID=Physo135128;Parent=Physo135128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 186136 186144 . - 0 ID=Physo135128;Parent=Physo135128;rank=6 scaffold_36 . exon 186136 186144 . - . ID=Physo135128.6;Parent=Physo135128;constitutive=1;rank=6 scaffold_36 . CDS 186171 186992 . - 0 ID=Physo135128;Parent=Physo135128;rank=5 scaffold_36 . exon 186171 186992 . - . ID=Physo135128.5;Parent=Physo135128;constitutive=1;rank=5 scaffold_36 . CDS 187038 187267 . - 0 ID=Physo135128;Parent=Physo135128;rank=4 scaffold_36 . exon 187038 187267 . - . ID=Physo135128.4;Parent=Physo135128;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 187337 187388 . - 0 ID=Physo135128;Parent=Physo135128;rank=3 scaffold_36 . exon 187337 187388 . - . ID=Physo135128.3;Parent=Physo135128;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_36 . CDS 187410 188045 . - 0 ID=Physo135128;Parent=Physo135128;rank=2 scaffold_36 . exon 187410 188045 . - . ID=Physo135128.2;Parent=Physo135128;constitutive=1;rank=2 scaffold_36 . CDS 188177 188257 . - 0 ID=Physo135128;Parent=Physo135128;rank=1 scaffold_36 . exon 188177 188257 . - . ID=Physo135128.1;Parent=Physo135128;constitutive=1;rank=1 scaffold_36 . biological_region 198749 198750 0.999 + . logic_name=eponine scaffold_36 . biological_region 198807 198814 0.999 - . logic_name=eponine scaffold_36 . biological_region 198867 198868 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 189556 192497 . + . ID=Physo135129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360045;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 189556 192497 . + . ID=Physo135129;Parent=Physo135129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 189556 189579 . + 0 ID=Physo135129;Parent=Physo135129;rank=1 scaffold_36 . exon 189556 189579 . + . ID=Physo135129.1;Parent=Physo135129;constitutive=1;rank=1 scaffold_36 . CDS 189782 190120 . + 0 ID=Physo135129;Parent=Physo135129;rank=2 scaffold_36 . exon 189782 190120 . + . ID=Physo135129.2;Parent=Physo135129;constitutive=1;rank=2 scaffold_36 . CDS 190184 191499 . + 0 ID=Physo135129;Parent=Physo135129;rank=3 scaffold_36 . exon 190184 191499 . + . ID=Physo135129.3;Parent=Physo135129;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 191591 192497 . + 0 ID=Physo135129;Parent=Physo135129;rank=4 scaffold_36 . exon 191591 192497 . + . ID=Physo135129.4;Parent=Physo135129;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 ensembl protein_coding_gene 193313 194257 . - . ID=Physo135130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360046;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 193313 194257 . - . ID=Physo135130;Parent=Physo135130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 193313 194257 . - 0 ID=Physo135130;Parent=Physo135130;rank=1 scaffold_36 . exon 193313 194257 . - . ID=Physo135130.1;Parent=Physo135130;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 196230 198351 . - . ID=Physo135131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360047;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 196230 198351 . - . ID=Physo135131;Parent=Physo135131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 196230 196238 . - 0 ID=Physo135131;Parent=Physo135131;rank=6 scaffold_36 . exon 196230 196238 . - . ID=Physo135131.6;Parent=Physo135131;constitutive=1;rank=6 scaffold_36 . CDS 196265 197086 . - 0 ID=Physo135131;Parent=Physo135131;rank=5 scaffold_36 . exon 196265 197086 . - . ID=Physo135131.5;Parent=Physo135131;constitutive=1;rank=5 scaffold_36 . CDS 197132 197361 . - 0 ID=Physo135131;Parent=Physo135131;rank=4 scaffold_36 . exon 197132 197361 . - . ID=Physo135131.4;Parent=Physo135131;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 197431 197482 . - 0 ID=Physo135131;Parent=Physo135131;rank=3 scaffold_36 . exon 197431 197482 . - . ID=Physo135131.3;Parent=Physo135131;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_36 . CDS 197504 198139 . - 0 ID=Physo135131;Parent=Physo135131;rank=2 scaffold_36 . exon 197504 198139 . - . ID=Physo135131.2;Parent=Physo135131;constitutive=1;rank=2 scaffold_36 . CDS 198271 198351 . - 0 ID=Physo135131;Parent=Physo135131;rank=1 scaffold_36 . exon 198271 198351 . - . ID=Physo135131.1;Parent=Physo135131;constitutive=1;rank=1 scaffold_36 . repeat_region 200198 200269 . ? . description=trf scaffold_36 . repeat_region 202050 202083 . ? . description=trf scaffold_36 . repeat_region 202050 202090 . ? . description=dust scaffold_36 . repeat_region 207896 207904 . ? . description=dust scaffold_36 ensembl protein_coding_gene 199630 201834 . - . ID=Physo135132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360048;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 199630 201834 . - . ID=Physo135132;Parent=Physo135132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 199630 200046 . - 0 ID=Physo135132;Parent=Physo135132;rank=4 scaffold_36 . exon 199630 200046 . - . ID=Physo135132.4;Parent=Physo135132;constitutive=1;rank=4 scaffold_36 . CDS 200105 201226 . - 0 ID=Physo135132;Parent=Physo135132;rank=3 scaffold_36 . exon 200105 201226 . - . ID=Physo135132.3;Parent=Physo135132;constitutive=1;rank=3 scaffold_36 . CDS 201304 201450 . - 0 ID=Physo135132;Parent=Physo135132;rank=2 scaffold_36 . exon 201304 201450 . - . ID=Physo135132.2;Parent=Physo135132;constitutive=1;rank=2 scaffold_36 . CDS 201532 201834 . - 0 ID=Physo135132;Parent=Physo135132;rank=1 scaffold_36 . exon 201532 201834 . - . ID=Physo135132.1;Parent=Physo135132;constitutive=1;rank=1 scaffold_36 . biological_region 209765 209768 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 213915 214400 . + . ID=Physo135133;biotype=protein_coding;description=PsAvh102 [Source:UniProtKB/TrEMBL%3BAcc:E0W518];external_name=estExt_fgenesh1_pg.C_360049;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 213915 214400 . + . ID=Physo135133;Parent=Physo135133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 213915 214400 . + 0 ID=Physo135133;Parent=Physo135133;rank=1 scaffold_36 . exon 213915 214400 . + . ID=Physo135133.1;Parent=Physo135133;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 217526 219280 . + . ID=Physo135134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360050;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 217526 219280 . + . ID=Physo135134;Parent=Physo135134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 217526 217557 . + 0 ID=Physo135134;Parent=Physo135134;rank=1 scaffold_36 . exon 217526 217557 . + . ID=Physo135134.1;Parent=Physo135134;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 217739 218573 . + 0 ID=Physo135134;Parent=Physo135134;rank=2 scaffold_36 . exon 217739 218573 . + . ID=Physo135134.2;Parent=Physo135134;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 218630 219280 . + 0 ID=Physo135134;Parent=Physo135134;rank=3 scaffold_36 . exon 218630 219280 . + . ID=Physo135134.3;Parent=Physo135134;constitutive=1;rank=3 scaffold_36 . repeat_region 222423 222445 . ? . description=dust scaffold_36 . repeat_region 222828 222850 . ? . description=dust scaffold_36 . repeat_region 222828 222850 . ? . description=trf scaffold_36 . repeat_region 224107 224155 . ? . description=trf scaffold_36 . repeat_region 224794 224818 . ? . description=trf scaffold_36 . repeat_region 226367 226674 . - . description=Sola3-2_PS scaffold_36 ensembl protein_coding_gene 220701 221318 . + . ID=Physo116863;biotype=protein_coding;external_name=estExt_Genewise1.C_360118;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 220701 221318 . + . ID=Physo116863;Parent=Physo116863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 220701 221318 . + . ID=Physo116863.1;Parent=Physo116863;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 220728 221318 . + 0 ID=Physo116863;Parent=Physo116863;rank=1 scaffold_36 ensembl protein_coding_gene 221945 222226 . + . ID=Physo116864;biotype=protein_coding;external_name=estExt_Genewise1.C_360119;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 221945 222226 . + . ID=Physo116864;Parent=Physo116864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 221945 222226 . + . ID=Physo116864.1;Parent=Physo116864;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 221987 222226 . + 0 ID=Physo116864;Parent=Physo116864;rank=1 scaffold_36 ensembl protein_coding_gene 225872 227442 . - . ID=Physo135135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360051;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 225872 227442 . - . ID=Physo135135;Parent=Physo135135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 225872 226850 . - 0 ID=Physo135135;Parent=Physo135135;rank=2 scaffold_36 . exon 225872 226850 . - . ID=Physo135135.2;Parent=Physo135135;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 227135 227442 . - 0 ID=Physo135135;Parent=Physo135135;rank=1 scaffold_36 . exon 227135 227442 . - . ID=Physo135135.1;Parent=Physo135135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 228278 229135 . - . ID=Physo135136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360052;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 228278 229135 . - . ID=Physo135136;Parent=Physo135136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 228278 229135 . - 0 ID=Physo135136;Parent=Physo135136;rank=1 scaffold_36 . exon 228278 229135 . - . ID=Physo135136.1;Parent=Physo135136;constitutive=1;rank=1 scaffold_36 . biological_region 229227 229230 0.999 + . logic_name=eponine scaffold_36 . biological_region 229282 229284 0.999 - . logic_name=eponine scaffold_36 . biological_region 229309 229315 0.999 + . logic_name=eponine scaffold_36 . biological_region 229356 229361 0.999 - . logic_name=eponine scaffold_36 . biological_region 229376 229382 0.999 + . logic_name=eponine scaffold_36 . biological_region 229402 229402 0.999 - . logic_name=eponine scaffold_36 . biological_region 233695 233698 0.999 - . logic_name=eponine scaffold_36 . biological_region 234009 234013 0.999 - . logic_name=eponine scaffold_36 . biological_region 234135 234136 0.999 + . logic_name=eponine scaffold_36 . biological_region 234573 234575 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 232820 233233 . + . ID=Physo135137;biotype=protein_coding;description=PsAvh48 [Source:UniProtKB/TrEMBL%3BAcc:E0W519];external_name=estExt_fgenesh1_pg.C_360053;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 232820 233233 . + . ID=Physo135137;Parent=Physo135137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 232820 233233 . + 0 ID=Physo135137;Parent=Physo135137;rank=1 scaffold_36 . exon 232820 233233 . + . ID=Physo135137.1;Parent=Physo135137;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 233511 234725 . + . ID=Physo135138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360054;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 233511 234725 . + . ID=Physo135138;Parent=Physo135138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 233511 234725 . + 0 ID=Physo135138;Parent=Physo135138;rank=1 scaffold_36 . exon 233511 234725 . + . ID=Physo135138.1;Parent=Physo135138;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 235501 236653 . + . ID=Physo135139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360055;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 235501 236653 . + . ID=Physo135139;Parent=Physo135139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 235501 235551 . + 0 ID=Physo135139;Parent=Physo135139;rank=1 scaffold_36 . exon 235501 235551 . + . ID=Physo135139.1;Parent=Physo135139;constitutive=1;rank=1 scaffold_36 . CDS 235646 236581 . + 0 ID=Physo135139;Parent=Physo135139;rank=2 scaffold_36 . exon 235646 236653 . + . ID=Physo135139.2;Parent=Physo135139;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_36 . repeat_region 240360 240411 . ? . description=trf scaffold_36 . repeat_region 241198 241211 . ? . description=dust scaffold_36 . repeat_region 246668 246676 . ? . description=dust scaffold_36 . repeat_region 246992 249007 . ? . description=dust scaffold_36 ensembl protein_coding_gene 239753 240916 . + . ID=Physo135140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360056;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 239753 240916 . + . ID=Physo135140;Parent=Physo135140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 239753 239835 . + 0 ID=Physo135140;Parent=Physo135140;rank=1 scaffold_36 . exon 239753 239835 . + . ID=Physo135140.1;Parent=Physo135140;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 239872 240010 . + 0 ID=Physo135140;Parent=Physo135140;rank=2 scaffold_36 . exon 239872 240010 . + . ID=Physo135140.2;Parent=Physo135140;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 240093 240779 . + 0 ID=Physo135140;Parent=Physo135140;rank=3 scaffold_36 . exon 240093 240779 . + . ID=Physo135140.3;Parent=Physo135140;constitutive=1;rank=3 scaffold_36 . CDS 240803 240916 . + 0 ID=Physo135140;Parent=Physo135140;rank=4 scaffold_36 . exon 240803 240916 . + . ID=Physo135140.4;Parent=Physo135140;constitutive=1;rank=4 scaffold_36 ensembl protein_coding_gene 241467 245862 . - . ID=Physo135141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360057;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 241467 245862 . - . ID=Physo135141;Parent=Physo135141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 241467 241906 . - 0 ID=Physo135141;Parent=Physo135141;rank=10 scaffold_36 . exon 241467 241906 . - . ID=Physo135141.10;Parent=Physo135141;constitutive=1;ensembl_phase=1;rank=10 scaffold_36 . CDS 242390 242598 . - 0 ID=Physo135141;Parent=Physo135141;rank=9 scaffold_36 . exon 242390 242598 . - . ID=Physo135141.9;Parent=Physo135141;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_36 . CDS 242619 242768 . - 0 ID=Physo135141;Parent=Physo135141;rank=8 scaffold_36 . exon 242619 242768 . - . ID=Physo135141.8;Parent=Physo135141;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_36 . CDS 242850 243390 . - 0 ID=Physo135141;Parent=Physo135141;rank=7 scaffold_36 . exon 242850 243390 . - . ID=Physo135141.7;Parent=Physo135141;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_36 . CDS 243502 243921 . - 0 ID=Physo135141;Parent=Physo135141;rank=6 scaffold_36 . exon 243502 243921 . - . ID=Physo135141.6;Parent=Physo135141;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_36 . CDS 244012 244677 . - 0 ID=Physo135141;Parent=Physo135141;rank=5 scaffold_36 . exon 244012 244677 . - . ID=Physo135141.5;Parent=Physo135141;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_36 . CDS 244731 244865 . - 0 ID=Physo135141;Parent=Physo135141;rank=4 scaffold_36 . exon 244731 244865 . - . ID=Physo135141.4;Parent=Physo135141;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 245117 245225 . - 0 ID=Physo135141;Parent=Physo135141;rank=3 scaffold_36 . exon 245117 245225 . - . ID=Physo135141.3;Parent=Physo135141;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_36 . CDS 245275 245379 . - 0 ID=Physo135141;Parent=Physo135141;rank=2 scaffold_36 . exon 245275 245379 . - . ID=Physo135141.2;Parent=Physo135141;constitutive=1;rank=2 scaffold_36 . CDS 245428 245862 . - 0 ID=Physo135141;Parent=Physo135141;rank=1 scaffold_36 . exon 245428 245862 . - . ID=Physo135141.1;Parent=Physo135141;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 246542 249658 . - . ID=Physo135142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360058;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 246542 249658 . - . ID=Physo135142;Parent=Physo135142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 246542 246552 . - 0 ID=Physo135142;Parent=Physo135142;rank=3 scaffold_36 . exon 246542 246552 . - . ID=Physo135142.3;Parent=Physo135142;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 249053 249351 . - 0 ID=Physo135142;Parent=Physo135142;rank=2 scaffold_36 . exon 249053 249351 . - . ID=Physo135142.2;Parent=Physo135142;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 249417 249658 . - 0 ID=Physo135142;Parent=Physo135142;rank=1 scaffold_36 . biological_region 249473 249477 0.999 - . logic_name=eponine scaffold_36 . biological_region 253093 253097 0.999 + . logic_name=eponine scaffold_36 . biological_region 254974 254977 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 254350 255435 . - . ID=Physo108848;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360002;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 254350 255435 . - . ID=Physo108848;Parent=Physo108848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 254350 255435 . - 0 ID=Physo108848;Parent=Physo108848;rank=1 scaffold_36 . exon 254350 255435 . - . ID=Physo108848.1;Parent=Physo108848;constitutive=1;rank=1 scaffold_36 . exon 249417 249658 . - . ID=Physo135142.1;Parent=Physo135142;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 252911 253935 . + . ID=Physo135143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360059;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 252911 253935 . + . ID=Physo135143;Parent=Physo135143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 252911 253101 . + 0 ID=Physo135143;Parent=Physo135143;rank=1 scaffold_36 . exon 252911 253101 . + . ID=Physo135143.1;Parent=Physo135143;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 253158 253935 . + 0 ID=Physo135143;Parent=Physo135143;rank=2 scaffold_36 . exon 253158 253935 . + . ID=Physo135143.2;Parent=Physo135143;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 ensembl protein_coding_gene 256936 257986 . - . ID=Physo135145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360061;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 256936 257986 . - . ID=Physo135145;Parent=Physo135145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 256936 256945 . - 0 ID=Physo135145;Parent=Physo135145;rank=3 scaffold_36 . exon 256936 256945 . - . ID=Physo135145.3;Parent=Physo135145;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 256996 257497 . - 0 ID=Physo135145;Parent=Physo135145;rank=2 scaffold_36 . exon 256996 257497 . - . ID=Physo135145.2;Parent=Physo135145;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_36 . CDS 257650 257986 . - 0 ID=Physo135145;Parent=Physo135145;rank=1 scaffold_36 . exon 257650 257986 . - . ID=Physo135145.1;Parent=Physo135145;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . repeat_region 259484 259539 . ? . description=dust scaffold_36 . repeat_region 260063 260071 . ? . description=dust scaffold_36 . repeat_region 263382 263389 . ? . description=dust scaffold_36 . repeat_region 263462 263475 . ? . description=dust scaffold_36 . repeat_region 263487 263589 . ? . description=trf scaffold_36 . repeat_region 263760 264054 . ? . description=dust scaffold_36 ensembl protein_coding_gene 259364 260358 . - . ID=Physo135146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360062;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 259364 260358 . - . ID=Physo135146;Parent=Physo135146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 259364 259470 . - 0 ID=Physo135146;Parent=Physo135146;rank=5 scaffold_36 . exon 259364 259470 . - . ID=Physo135146.5;Parent=Physo135146;constitutive=1;ensembl_phase=1;rank=5 scaffold_36 . CDS 259545 259813 . - 0 ID=Physo135146;Parent=Physo135146;rank=4 scaffold_36 . exon 259545 259813 . - . ID=Physo135146.4;Parent=Physo135146;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_36 . CDS 259959 260008 . - 0 ID=Physo135146;Parent=Physo135146;rank=3 scaffold_36 . exon 259959 260008 . - . ID=Physo135146.3;Parent=Physo135146;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 260077 260140 . - 0 ID=Physo135146;Parent=Physo135146;rank=2 scaffold_36 . exon 260077 260140 . - . ID=Physo135146.2;Parent=Physo135146;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 260216 260358 . - 0 ID=Physo135146;Parent=Physo135146;rank=1 scaffold_36 . exon 260216 260358 . - . ID=Physo135146.1;Parent=Physo135146;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 265753 267029 . - . ID=Physo135147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360063;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 265753 267029 . - . ID=Physo135147;Parent=Physo135147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 265753 266970 . - 0 ID=Physo135147;Parent=Physo135147;rank=1 scaffold_36 . exon 265753 267029 . - . ID=Physo135147.1;Parent=Physo135147;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . biological_region 270164 270164 0.999 + . logic_name=eponine scaffold_36 . biological_region 270793 270802 0.999 + . logic_name=eponine scaffold_36 . biological_region 277652 277654 0.999 + . logic_name=eponine scaffold_36 . biological_region 277774 277779 0.999 - . logic_name=eponine scaffold_36 . biological_region 277822 277824 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 272856 274132 . + . ID=Physo108849;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360003;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 272856 274132 . + . ID=Physo108849;Parent=Physo108849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 272856 274132 . + . ID=Physo108849.1;Parent=Physo108849;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 272915 274132 . + 0 ID=Physo108849;Parent=Physo108849;rank=1 scaffold_36 ensembl protein_coding_gene 275247 276523 . - . ID=Physo135149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360065;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 275247 276523 . - . ID=Physo135149;Parent=Physo135149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 275247 276464 . - 0 ID=Physo135149;Parent=Physo135149;rank=1 scaffold_36 . exon 275247 276523 . - . ID=Physo135149.1;Parent=Physo135149;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . repeat_region 278980 279033 . ? . description=trf scaffold_36 . repeat_region 281655 281695 . ? . description=dust scaffold_36 . repeat_region 285737 285746 . ? . description=dust scaffold_36 . repeat_region 286833 286905 . ? . description=trf scaffold_36 ensembl protein_coding_gene 279339 281789 . - . ID=Physo135150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360066;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 279339 281789 . - . ID=Physo135150;Parent=Physo135150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 279339 279688 . - 0 ID=Physo135150;Parent=Physo135150;rank=6 scaffold_36 . exon 279339 279688 . - . ID=Physo135150.6;Parent=Physo135150;constitutive=1;ensembl_phase=1;rank=6 scaffold_36 . CDS 279780 280151 . - 0 ID=Physo135150;Parent=Physo135150;rank=5 scaffold_36 . exon 279780 280151 . - . ID=Physo135150.5;Parent=Physo135150;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_36 . CDS 280708 281014 . - 0 ID=Physo135150;Parent=Physo135150;rank=4 scaffold_36 . exon 280708 281014 . - . ID=Physo135150.4;Parent=Physo135150;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_36 . CDS 281044 281403 . - 0 ID=Physo135150;Parent=Physo135150;rank=3 scaffold_36 . exon 281044 281403 . - . ID=Physo135150.3;Parent=Physo135150;constitutive=1;rank=3 scaffold_36 . CDS 281424 281448 . - 0 ID=Physo135150;Parent=Physo135150;rank=2 scaffold_36 . exon 281424 281448 . - . ID=Physo135150.2;Parent=Physo135150;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 281482 281789 . - 0 ID=Physo135150;Parent=Physo135150;rank=1 scaffold_36 . exon 281482 281789 . - . ID=Physo135150.1;Parent=Physo135150;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 285816 287045 . - . ID=Physo135151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360067;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 285816 287045 . - . ID=Physo135151;Parent=Physo135151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 285816 287045 . - 0 ID=Physo135151;Parent=Physo135151;rank=1 scaffold_36 . exon 285816 287045 . - . ID=Physo135151.1;Parent=Physo135151;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 290564 291688 . - . ID=Physo108850;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360004;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 290564 291688 . - . ID=Physo108850;Parent=Physo108850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 290564 291688 . - 0 ID=Physo108850;Parent=Physo108850;rank=1 scaffold_36 . exon 290564 291688 . - . ID=Physo108850.1;Parent=Physo108850;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 294113 295466 . - . ID=Physo108851;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360005;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 294113 295466 . - . ID=Physo108851;Parent=Physo108851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 294113 295262 . - 0 ID=Physo108851;Parent=Physo108851;rank=2 scaffold_36 . exon 294113 295262 . - . ID=Physo108851.2;Parent=Physo108851;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 295300 295466 . - 0 ID=Physo108851;Parent=Physo108851;rank=1 scaffold_36 . exon 295300 295466 . - . ID=Physo108851.1;Parent=Physo108851;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 298626 299840 . - . ID=Physo135154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360070;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 298626 299840 . - . ID=Physo135154;Parent=Physo135154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 298626 298636 . - 0 ID=Physo135154;Parent=Physo135154;rank=3 scaffold_36 . exon 298626 298636 . - . ID=Physo135154.3;Parent=Physo135154;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 299062 299651 . - 0 ID=Physo135154;Parent=Physo135154;rank=2 scaffold_36 . CDS 299674 299840 . - 0 ID=Physo135154;Parent=Physo135154;rank=1 scaffold_36 . repeat_region 298951 298972 . ? . description=dust scaffold_36 . repeat_region 299628 299676 . ? . description=trf scaffold_36 . repeat_region 301193 303503 . ? . description=dust scaffold_36 . repeat_region 304135 304160 . ? . description=trf scaffold_36 . repeat_region 304726 304733 . ? . description=dust scaffold_36 . repeat_region 305311 305490 . + . description=(CAG)n scaffold_36 . repeat_region 305338 305380 . ? . description=dust scaffold_36 . repeat_region 305708 305764 . ? . description=trf scaffold_36 . biological_region 305823 305825 0.999 - . logic_name=eponine scaffold_36 . repeat_region 307870 310459 . ? . description=dust scaffold_36 ensembl protein_coding_gene 305188 306554 . + . ID=Physo116769;biotype=protein_coding;external_name=estExt_Genewise1.C_360024;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 305188 306554 . + . ID=Physo116769;Parent=Physo116769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 305188 305294 . + 0 ID=Physo116769;Parent=Physo116769;rank=1 scaffold_36 . exon 305188 305294 . + . ID=Physo116769.1;Parent=Physo116769;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 305538 305721 . + 0 ID=Physo116769;Parent=Physo116769;rank=2 scaffold_36 . exon 305538 305721 . + . ID=Physo116769.2;Parent=Physo116769;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 305739 306554 . + 0 ID=Physo116769;Parent=Physo116769;rank=3 scaffold_36 . exon 305739 306554 . + . ID=Physo116769.3;Parent=Physo116769;constitutive=1;rank=3 scaffold_36 . exon 299062 299651 . - . ID=Physo135154.2;Parent=Physo135154;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_36 . exon 299674 299840 . - . ID=Physo135154.1;Parent=Physo135154;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . repeat_region 319940 320009 . ? . description=dust scaffold_36 . repeat_region 320144 320167 . ? . description=dust scaffold_36 . repeat_region 324303 324377 . ? . description=trf scaffold_36 . repeat_region 327636 327702 . ? . description=trf scaffold_36 . repeat_region 327642 327750 . ? . description=trf scaffold_36 . repeat_region 327696 327760 . ? . description=trf scaffold_36 . repeat_region 327717 327851 . ? . description=trf scaffold_36 . repeat_region 327823 327931 . ? . description=trf scaffold_36 ensembl protein_coding_gene 327486 328949 . + . ID=Physo116776;biotype=protein_coding;external_name=estExt_Genewise1.C_360031;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 327486 328949 . + . ID=Physo116776;Parent=Physo116776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 327486 327605 . + 0 ID=Physo116776;Parent=Physo116776;rank=1 scaffold_36 . exon 327486 327605 . + . ID=Physo116776.1;Parent=Physo116776;constitutive=1;rank=1 scaffold_36 . CDS 327891 328133 . + 0 ID=Physo116776;Parent=Physo116776;rank=2 scaffold_36 . exon 327891 328133 . + . ID=Physo116776.2;Parent=Physo116776;constitutive=1;rank=2 scaffold_36 . CDS 328215 328949 . + 0 ID=Physo116776;Parent=Physo116776;rank=3 scaffold_36 . exon 328215 328949 . + . ID=Physo116776.3;Parent=Physo116776;constitutive=1;rank=3 scaffold_36 ensembl protein_coding_gene 321017 322298 . - . ID=Physo135156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360072;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 321017 322298 . - . ID=Physo135156;Parent=Physo135156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 321017 321163 . - 0 ID=Physo135156;Parent=Physo135156;rank=4 scaffold_36 . exon 321017 321163 . - . ID=Physo135156.4;Parent=Physo135156;constitutive=1;rank=4 scaffold_36 . CDS 321210 321833 . - 0 ID=Physo135156;Parent=Physo135156;rank=3 scaffold_36 . exon 321210 321833 . - . ID=Physo135156.3;Parent=Physo135156;constitutive=1;rank=3 scaffold_36 . CDS 321949 322137 . - 0 ID=Physo135156;Parent=Physo135156;rank=2 scaffold_36 . exon 321949 322137 . - . ID=Physo135156.2;Parent=Physo135156;constitutive=1;rank=2 scaffold_36 . CDS 322179 322298 . - 0 ID=Physo135156;Parent=Physo135156;rank=1 scaffold_36 . exon 322179 322298 . - . ID=Physo135156.1;Parent=Physo135156;constitutive=1;rank=1 scaffold_36 . biological_region 330412 330416 0.999 + . logic_name=eponine scaffold_36 . biological_region 331933 331935 0.999 + . logic_name=eponine scaffold_36 . biological_region 331957 331962 0.999 + . logic_name=eponine scaffold_36 . biological_region 332039 332043 0.999 - . logic_name=eponine scaffold_36 . biological_region 332649 332650 0.999 + . logic_name=eponine scaffold_36 . biological_region 334339 334342 0.999 + . logic_name=eponine scaffold_36 . biological_region 334954 334960 0.999 - . logic_name=eponine scaffold_36 . biological_region 334966 334968 0.999 - . logic_name=eponine scaffold_36 . biological_region 335405 335409 0.999 + . logic_name=eponine scaffold_36 . biological_region 335775 335777 0.999 + . logic_name=eponine scaffold_36 . biological_region 335844 335846 0.999 - . logic_name=eponine scaffold_36 . biological_region 335865 335868 0.999 + . logic_name=eponine scaffold_36 . biological_region 335885 335889 0.999 + . logic_name=eponine scaffold_36 . biological_region 335893 335896 0.999 - . logic_name=eponine scaffold_36 . biological_region 335931 335932 0.999 - . logic_name=eponine scaffold_36 . biological_region 335960 335961 0.999 + . logic_name=eponine scaffold_36 . biological_region 335984 335988 0.999 + . logic_name=eponine scaffold_36 . biological_region 336023 336026 0.999 + . logic_name=eponine scaffold_36 . biological_region 336026 336031 0.999 - . logic_name=eponine scaffold_36 . biological_region 336298 336298 0.999 + . logic_name=eponine scaffold_36 . biological_region 336356 336362 0.999 - . logic_name=eponine scaffold_36 . biological_region 336415 336420 0.999 + . logic_name=eponine scaffold_36 . biological_region 336519 336523 0.999 + . logic_name=eponine scaffold_36 . biological_region 336524 336533 0.999 - . logic_name=eponine scaffold_36 . biological_region 336566 336567 0.999 + . logic_name=eponine scaffold_36 . biological_region 336714 336714 0.999 + . logic_name=eponine scaffold_36 . biological_region 336785 336788 0.999 - . logic_name=eponine scaffold_36 . biological_region 336830 336831 0.999 - . logic_name=eponine scaffold_36 . biological_region 337174 337174 0.999 - . logic_name=eponine scaffold_36 . repeat_region 337549 338068 . + . description=Sola3-2_PS scaffold_36 . biological_region 338133 338135 0.999 + . logic_name=eponine scaffold_36 . biological_region 338157 338163 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 335127 336987 . - . ID=Physo108852;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360006;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 335127 336987 . - . ID=Physo108852;Parent=Physo108852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 335127 336987 . - . ID=Physo108852.1;Parent=Physo108852;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 335370 336959 . - 0 ID=Physo108852;Parent=Physo108852;rank=1 scaffold_36 ensembl protein_coding_gene 329866 331849 . - . ID=Physo135158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360074;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 329866 331849 . - . ID=Physo135158;Parent=Physo135158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 329866 330756 . - 0 ID=Physo135158;Parent=Physo135158;rank=5 scaffold_36 . exon 329866 330756 . - . ID=Physo135158.5;Parent=Physo135158;constitutive=1;rank=5 scaffold_36 . CDS 330976 331221 . - 0 ID=Physo135158;Parent=Physo135158;rank=4 scaffold_36 . exon 330976 331221 . - . ID=Physo135158.4;Parent=Physo135158;constitutive=1;rank=4 scaffold_36 . CDS 331248 331519 . - 0 ID=Physo135158;Parent=Physo135158;rank=3 scaffold_36 . exon 331248 331519 . - . ID=Physo135158.3;Parent=Physo135158;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 331560 331668 . - 0 ID=Physo135158;Parent=Physo135158;rank=2 scaffold_36 . exon 331560 331668 . - . ID=Physo135158.2;Parent=Physo135158;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 331730 331849 . - 0 ID=Physo135158;Parent=Physo135158;rank=1 scaffold_36 . exon 331730 331849 . - . ID=Physo135158.1;Parent=Physo135158;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 331972 335053 . + . ID=Physo135159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360075;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 331972 335053 . + . ID=Physo135159;Parent=Physo135159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 331972 332113 . + 0 ID=Physo135159;Parent=Physo135159;rank=1 scaffold_36 . exon 331972 332113 . + . ID=Physo135159.1;Parent=Physo135159;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 332137 332465 . + 0 ID=Physo135159;Parent=Physo135159;rank=2 scaffold_36 . exon 332137 332465 . + . ID=Physo135159.2;Parent=Physo135159;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 332561 332797 . + 0 ID=Physo135159;Parent=Physo135159;rank=3 scaffold_36 . exon 332561 332797 . + . ID=Physo135159.3;Parent=Physo135159;constitutive=1;rank=3 scaffold_36 . CDS 332875 332956 . + 0 ID=Physo135159;Parent=Physo135159;rank=4 scaffold_36 . exon 332875 332956 . + . ID=Physo135159.4;Parent=Physo135159;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_36 . CDS 333037 333279 . + 0 ID=Physo135159;Parent=Physo135159;rank=5 scaffold_36 . exon 333037 333279 . + . ID=Physo135159.5;Parent=Physo135159;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_36 . CDS 333579 335053 . + 0 ID=Physo135159;Parent=Physo135159;rank=6 scaffold_36 . exon 333579 335053 . + . ID=Physo135159.6;Parent=Physo135159;constitutive=1;ensembl_phase=1;rank=6 scaffold_36 ensembl protein_coding_gene 337306 344415 . + . ID=Physo135161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360077;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 337306 344415 . + . ID=Physo135161;Parent=Physo135161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 337306 338399 . + . ID=Physo135161.1;Parent=Physo135161;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 337347 338399 . + 0 ID=Physo135161;Parent=Physo135161;rank=1 scaffold_36 . CDS 339535 339821 . + 0 ID=Physo135161;Parent=Physo135161;rank=2 scaffold_36 . CDS 339994 340225 . + 0 ID=Physo135161;Parent=Physo135161;rank=3 scaffold_36 . CDS 340929 341919 . + 0 ID=Physo135161;Parent=Physo135161;rank=4 scaffold_36 . CDS 342036 342605 . + 0 ID=Physo135161;Parent=Physo135161;rank=5 scaffold_36 . CDS 342835 342902 . + 0 ID=Physo135161;Parent=Physo135161;rank=6 scaffold_36 . CDS 342960 343163 . + 0 ID=Physo135161;Parent=Physo135161;rank=7 scaffold_36 . CDS 343479 344372 . + 0 ID=Physo135161;Parent=Physo135161;rank=8 scaffold_36 . CDS 344410 344415 . + 0 ID=Physo135161;Parent=Physo135161;rank=9 scaffold_36 . repeat_region 340308 340315 . ? . description=dust scaffold_36 . exon 339535 339821 . + . ID=Physo135161.2;Parent=Physo135161;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_36 . exon 339994 340225 . + . ID=Physo135161.3;Parent=Physo135161;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . exon 340929 341919 . + . ID=Physo135161.4;Parent=Physo135161;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_36 . exon 342036 342605 . + . ID=Physo135161.5;Parent=Physo135161;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_36 . exon 342835 342902 . + . ID=Physo135161.6;Parent=Physo135161;constitutive=1;ensembl_phase=1;rank=6 scaffold_36 . exon 342960 343163 . + . ID=Physo135161.7;Parent=Physo135161;constitutive=1;rank=7 scaffold_36 . exon 343479 344372 . + . ID=Physo135161.8;Parent=Physo135161;constitutive=1;rank=8 scaffold_36 . exon 344410 344415 . + . ID=Physo135161.9;Parent=Physo135161;constitutive=1;rank=9 scaffold_36 . repeat_region 356656 356740 . ? . description=trf scaffold_36 . repeat_region 356946 356965 . ? . description=trf scaffold_36 ensembl protein_coding_gene 354514 356483 . - . ID=Physo135162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360078;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 354514 356483 . - . ID=Physo135162;Parent=Physo135162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 354514 355323 . - 0 ID=Physo135162;Parent=Physo135162;rank=4 scaffold_36 . exon 354514 355323 . - . ID=Physo135162.4;Parent=Physo135162;constitutive=1;rank=4 scaffold_36 . CDS 355362 355666 . - 0 ID=Physo135162;Parent=Physo135162;rank=3 scaffold_36 . exon 355362 355666 . - . ID=Physo135162.3;Parent=Physo135162;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 355768 355955 . - 0 ID=Physo135162;Parent=Physo135162;rank=2 scaffold_36 . exon 355768 355955 . - . ID=Physo135162.2;Parent=Physo135162;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 356065 356483 . - 0 ID=Physo135162;Parent=Physo135162;rank=1 scaffold_36 . exon 356065 356483 . - . ID=Physo135162.1;Parent=Physo135162;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . biological_region 358972 358972 0.999 - . logic_name=eponine scaffold_36 . biological_region 363427 363429 0.999 - . logic_name=eponine scaffold_36 . biological_region 365380 365388 0.999 + . logic_name=eponine scaffold_36 . biological_region 365402 365406 0.999 + . logic_name=eponine scaffold_36 . biological_region 365489 365492 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 358904 359440 . + . ID=Physo135163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360079;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 358904 359440 . + . ID=Physo135163;Parent=Physo135163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 358904 359137 . + 0 ID=Physo135163;Parent=Physo135163;rank=1 scaffold_36 . exon 358904 359137 . + . ID=Physo135163.1;Parent=Physo135163;constitutive=1;rank=1 scaffold_36 . CDS 359257 359439 . + 0 ID=Physo135163;Parent=Physo135163;rank=2 scaffold_36 . exon 359257 359440 . + . ID=Physo135163.2;Parent=Physo135163;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_36 ensembl protein_coding_gene 363807 365331 . + . ID=Physo135164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360080;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 363807 365331 . + . ID=Physo135164;Parent=Physo135164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 363807 363966 . + 0 ID=Physo135164;Parent=Physo135164;rank=1 scaffold_36 . exon 363807 363966 . + . ID=Physo135164.1;Parent=Physo135164;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 364055 365331 . + 0 ID=Physo135164;Parent=Physo135164;rank=2 scaffold_36 . exon 364055 365331 . + . ID=Physo135164.2;Parent=Physo135164;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 ensembl protein_coding_gene 367102 369850 . + . ID=Physo135165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360081;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 367102 369850 . + . ID=Physo135165;Parent=Physo135165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 367102 367195 . + 0 ID=Physo135165;Parent=Physo135165;rank=1 scaffold_36 . exon 367102 367195 . + . ID=Physo135165.1;Parent=Physo135165;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 367559 367938 . + 0 ID=Physo135165;Parent=Physo135165;rank=2 scaffold_36 . exon 367559 367938 . + . ID=Physo135165.2;Parent=Physo135165;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 367960 368304 . + 0 ID=Physo135165;Parent=Physo135165;rank=3 scaffold_36 . exon 367960 368304 . + . ID=Physo135165.3;Parent=Physo135165;constitutive=1;rank=3 scaffold_36 . CDS 368419 369363 . + 0 ID=Physo135165;Parent=Physo135165;rank=4 scaffold_36 . exon 368419 369363 . + . ID=Physo135165.4;Parent=Physo135165;constitutive=1;rank=4 scaffold_36 . CDS 369398 369850 . + 0 ID=Physo135165;Parent=Physo135165;rank=5 scaffold_36 . repeat_region 370624 370755 . ? . description=dust scaffold_36 . repeat_region 370756 370816 . ? . description=trf scaffold_36 . repeat_region 370757 370816 . ? . description=trf scaffold_36 . repeat_region 370757 370816 . ? . description=trf scaffold_36 . repeat_region 370791 370816 . ? . description=dust scaffold_36 . repeat_region 372567 372661 . ? . description=trf scaffold_36 . repeat_region 372596 372661 . ? . description=trf scaffold_36 . repeat_region 374755 374785 . ? . description=trf scaffold_36 . exon 369398 369850 . + . ID=Physo135165.5;Parent=Physo135165;constitutive=1;rank=5 scaffold_36 ensembl protein_coding_gene 370816 373021 . + . ID=Physo135166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360082;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 370816 373021 . + . ID=Physo135166;Parent=Physo135166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 370816 371193 . + 0 ID=Physo135166;Parent=Physo135166;rank=1 scaffold_36 . exon 370816 371193 . + . ID=Physo135166.1;Parent=Physo135166;constitutive=1;rank=1 scaffold_36 . CDS 371214 371561 . + 0 ID=Physo135166;Parent=Physo135166;rank=2 scaffold_36 . exon 371214 371561 . + . ID=Physo135166.2;Parent=Physo135166;constitutive=1;rank=2 scaffold_36 . CDS 371635 371910 . + 0 ID=Physo135166;Parent=Physo135166;rank=3 scaffold_36 . exon 371635 371910 . + . ID=Physo135166.3;Parent=Physo135166;constitutive=1;rank=3 scaffold_36 . CDS 372137 373021 . + 0 ID=Physo135166;Parent=Physo135166;rank=4 scaffold_36 . exon 372137 373021 . + . ID=Physo135166.4;Parent=Physo135166;constitutive=1;rank=4 scaffold_36 ensembl protein_coding_gene 374212 377623 . + . ID=Physo135167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360083;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 374212 377623 . + . ID=Physo135167;Parent=Physo135167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 374212 376151 . + 0 ID=Physo135167;Parent=Physo135167;rank=1 scaffold_36 . exon 374212 376151 . + . ID=Physo135167.1;Parent=Physo135167;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 376188 376692 . + 0 ID=Physo135167;Parent=Physo135167;rank=2 scaffold_36 . exon 376188 376692 . + . ID=Physo135167.2;Parent=Physo135167;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 376720 377254 . + 0 ID=Physo135167;Parent=Physo135167;rank=3 scaffold_36 . exon 376720 377254 . + . ID=Physo135167.3;Parent=Physo135167;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_36 . CDS 377308 377528 . + 0 ID=Physo135167;Parent=Physo135167;rank=4 scaffold_36 . exon 377308 377528 . + . ID=Physo135167.4;Parent=Physo135167;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 377606 377623 . + 0 ID=Physo135167;Parent=Physo135167;rank=5 scaffold_36 . exon 377606 377623 . + . ID=Physo135167.5;Parent=Physo135167;constitutive=1;rank=5 scaffold_36 . biological_region 383312 383312 0.999 + . logic_name=eponine scaffold_36 . biological_region 387115 387115 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 380409 383795 . - . ID=Physo135168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360084;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 380409 383795 . - . ID=Physo135168;Parent=Physo135168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 380409 382712 . - 0 ID=Physo135168;Parent=Physo135168;rank=5 scaffold_36 . exon 380409 382712 . - . ID=Physo135168.5;Parent=Physo135168;constitutive=1;rank=5 scaffold_36 . CDS 382776 382823 . - 0 ID=Physo135168;Parent=Physo135168;rank=4 scaffold_36 . exon 382776 382823 . - . ID=Physo135168.4;Parent=Physo135168;constitutive=1;rank=4 scaffold_36 . CDS 382897 383000 . - 0 ID=Physo135168;Parent=Physo135168;rank=3 scaffold_36 . exon 382897 383000 . - . ID=Physo135168.3;Parent=Physo135168;constitutive=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 383110 383644 . - 0 ID=Physo135168;Parent=Physo135168;rank=2 scaffold_36 . exon 383110 383644 . - . ID=Physo135168.2;Parent=Physo135168;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 383724 383795 . - 0 ID=Physo135168;Parent=Physo135168;rank=1 scaffold_36 . exon 383724 383795 . - . ID=Physo135168.1;Parent=Physo135168;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 384823 386211 . + . ID=Physo135169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360085;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 384823 386211 . + . ID=Physo135169;Parent=Physo135169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 384823 386211 . + 0 ID=Physo135169;Parent=Physo135169;rank=1 scaffold_36 . exon 384823 386211 . + . ID=Physo135169.1;Parent=Physo135169;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 387051 391587 . - . ID=Physo135170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360086;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 387051 391587 . - . ID=Physo135170;Parent=Physo135170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 387051 387609 . - 0 ID=Physo135170;Parent=Physo135170;rank=7 scaffold_36 . exon 387051 387609 . - . ID=Physo135170.7;Parent=Physo135170;constitutive=1;ensembl_phase=2;rank=7 scaffold_36 . CDS 387697 388848 . - 0 ID=Physo135170;Parent=Physo135170;rank=6 scaffold_36 . exon 387697 388848 . - . ID=Physo135170.6;Parent=Physo135170;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_36 . CDS 388919 389117 . - 0 ID=Physo135170;Parent=Physo135170;rank=5 scaffold_36 . CDS 389417 389930 . - 0 ID=Physo135170;Parent=Physo135170;rank=4 scaffold_36 . CDS 390102 391187 . - 0 ID=Physo135170;Parent=Physo135170;rank=3 scaffold_36 . CDS 391227 391487 . - 0 ID=Physo135170;Parent=Physo135170;rank=2 scaffold_36 . CDS 391555 391587 . - 0 ID=Physo135170;Parent=Physo135170;rank=1 scaffold_36 . repeat_region 388717 388740 . ? . description=trf scaffold_36 . repeat_region 388736 388795 . ? . description=dust scaffold_36 . repeat_region 388737 388794 . ? . description=trf scaffold_36 . repeat_region 391767 391862 . ? . description=trf scaffold_36 . repeat_region 392518 392670 . ? . description=trf scaffold_36 . exon 388919 389117 . - . ID=Physo135170.5;Parent=Physo135170;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_36 . exon 389417 389930 . - . ID=Physo135170.4;Parent=Physo135170;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_36 . exon 390102 391187 . - . ID=Physo135170.3;Parent=Physo135170;constitutive=1;rank=3 scaffold_36 . exon 391227 391487 . - . ID=Physo135170.2;Parent=Physo135170;constitutive=1;rank=2 scaffold_36 . exon 391555 391587 . - . ID=Physo135170.1;Parent=Physo135170;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 396522 399246 . + . ID=Physo135171;biotype=protein_coding;description=PsAvh459 [Source:UniProtKB/TrEMBL%3BAcc:E0W522];external_name=estExt_fgenesh1_pg.C_360087;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 396522 399246 . + . ID=Physo135171;Parent=Physo135171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 396522 399089 . + 0 ID=Physo135171;Parent=Physo135171;rank=1 scaffold_36 . exon 396522 399246 . + . ID=Physo135171.1;Parent=Physo135171;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_36 . biological_region 403096 403097 0.999 + . logic_name=eponine scaffold_36 . biological_region 405702 405706 0.999 - . logic_name=eponine scaffold_36 . biological_region 405732 405738 0.999 - . logic_name=eponine scaffold_36 . biological_region 406567 406568 0.999 + . logic_name=eponine scaffold_36 . biological_region 407949 407954 0.999 - . logic_name=eponine scaffold_36 . biological_region 408041 408042 0.999 + . logic_name=eponine scaffold_36 . biological_region 408062 408065 0.999 + . logic_name=eponine scaffold_36 . biological_region 408077 408078 0.999 + . logic_name=eponine scaffold_36 . biological_region 408136 408138 0.999 + . logic_name=eponine scaffold_36 . biological_region 408141 408145 0.999 - . logic_name=eponine scaffold_36 . biological_region 408216 408220 0.999 - . logic_name=eponine scaffold_36 . biological_region 408434 408436 0.999 + . logic_name=eponine scaffold_36 . biological_region 408465 408466 0.999 + . logic_name=eponine scaffold_36 . biological_region 408488 408493 0.999 + . logic_name=eponine scaffold_36 . biological_region 408504 408511 0.999 + . logic_name=eponine scaffold_36 . biological_region 408561 408562 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 402493 408693 . - . ID=Physo135172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360088;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 402493 408693 . - . ID=Physo135172;Parent=Physo135172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 402493 408693 . - 0 ID=Physo135172;Parent=Physo135172;rank=1 scaffold_36 . exon 402493 408693 . - . ID=Physo135172.1;Parent=Physo135172;constitutive=1;rank=1 scaffold_36 . repeat_region 409183 409218 . ? . description=trf scaffold_36 . repeat_region 409834 409891 . ? . description=trf scaffold_36 . repeat_region 411533 411544 . ? . description=dust scaffold_36 ensembl protein_coding_gene 410855 411202 . - . ID=Physo116789;biotype=protein_coding;external_name=estExt_Genewise1.C_360044;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 410855 411202 . - . ID=Physo116789;Parent=Physo116789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 410855 410873 . - . ID=Physo116789.2;Parent=Physo116789;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_36 . CDS 410857 410873 . - 0 ID=Physo116789;Parent=Physo116789;rank=2 scaffold_36 . CDS 410913 411201 . - 0 ID=Physo116789;Parent=Physo116789;rank=1 scaffold_36 . exon 410913 411202 . - . ID=Physo116789.1;Parent=Physo116789;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_36 ensembl protein_coding_gene 412317 412667 . - . ID=Physo135173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360089;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 412317 412667 . - . ID=Physo135173;Parent=Physo135173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 412317 412667 . - 0 ID=Physo135173;Parent=Physo135173;rank=1 scaffold_36 . exon 412317 412667 . - . ID=Physo135173.1;Parent=Physo135173;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 413432 415464 . + . ID=Physo135174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360090;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 413432 415464 . + . ID=Physo135174;Parent=Physo135174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 413432 413979 . + 0 ID=Physo135174;Parent=Physo135174;rank=1 scaffold_36 . exon 413432 413979 . + . ID=Physo135174.1;Parent=Physo135174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 414197 414244 . + 0 ID=Physo135174;Parent=Physo135174;rank=2 scaffold_36 . exon 414197 414244 . + . ID=Physo135174.2;Parent=Physo135174;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_36 . CDS 414415 414498 . + 0 ID=Physo135174;Parent=Physo135174;rank=3 scaffold_36 . exon 414415 414498 . + . ID=Physo135174.3;Parent=Physo135174;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_36 . CDS 415019 415436 . + 0 ID=Physo135174;Parent=Physo135174;rank=4 scaffold_36 . exon 415019 415464 . + . ID=Physo135174.4;Parent=Physo135174;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_36 . biological_region 424339 424341 0.999 + . logic_name=eponine scaffold_36 . biological_region 425736 425739 0.999 - . logic_name=eponine scaffold_36 . biological_region 425804 425806 0.999 - . logic_name=eponine scaffold_36 . biological_region 426773 426780 0.999 - . logic_name=eponine scaffold_36 . biological_region 426798 426801 0.999 - . logic_name=eponine scaffold_36 . biological_region 426978 426979 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 426136 426888 . - . ID=Physo108853;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360007;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 426136 426888 . - . ID=Physo108853;Parent=Physo108853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 426136 426562 . - 0 ID=Physo108853;Parent=Physo108853;rank=2 scaffold_36 . exon 426136 426562 . - . ID=Physo108853.2;Parent=Physo108853;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 426638 426888 . - 0 ID=Physo108853;Parent=Physo108853;rank=1 scaffold_36 . exon 426638 426888 . - . ID=Physo108853.1;Parent=Physo108853;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 419442 420140 . - . ID=Physo135175;biotype=protein_coding;description=PsAvh140 [Source:UniProtKB/TrEMBL%3BAcc:E0W524];external_name=estExt_fgenesh1_pg.C_360091;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 419442 420140 . - . ID=Physo135175;Parent=Physo135175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 419442 420140 . - 0 ID=Physo135175;Parent=Physo135175;rank=1 scaffold_36 . exon 419442 420140 . - . ID=Physo135175.1;Parent=Physo135175;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 420985 422188 . - . ID=Physo135176;biotype=protein_coding;description=PsAvh230 [Source:UniProtKB/TrEMBL%3BAcc:E0W525];external_name=estExt_fgenesh1_pg.C_360092;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 420985 422188 . - . ID=Physo135176;Parent=Physo135176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 420985 421004 . - 0 ID=Physo135176;Parent=Physo135176;rank=2 scaffold_36 . exon 420985 421004 . - . ID=Physo135176.2;Parent=Physo135176;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 421516 422188 . - 0 ID=Physo135176;Parent=Physo135176;rank=1 scaffold_36 . exon 421516 422188 . - . ID=Physo135176.1;Parent=Physo135176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 424121 424608 . + . ID=Physo135177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360093;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 424121 424608 . + . ID=Physo135177;Parent=Physo135177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 424121 424473 . + 0 ID=Physo135177;Parent=Physo135177;rank=1 scaffold_36 . exon 424121 424473 . + . ID=Physo135177.1;Parent=Physo135177;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 424518 424608 . + 0 ID=Physo135177;Parent=Physo135177;rank=2 scaffold_36 . exon 424518 424608 . + . ID=Physo135177.2;Parent=Physo135177;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 ensembl protein_coding_gene 425149 426062 . + . ID=Physo135178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360094;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 425149 426062 . + . ID=Physo135178;Parent=Physo135178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 425149 425161 . + . ID=Physo135178.1;Parent=Physo135178;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 425159 425161 . + 0 ID=Physo135178;Parent=Physo135178;rank=1 scaffold_36 . CDS 425384 425833 . + 0 ID=Physo135178;Parent=Physo135178;rank=2 scaffold_36 . exon 425384 426062 . + . ID=Physo135178.2;Parent=Physo135178;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_36 ensembl protein_coding_gene 427003 427966 . + . ID=Physo135180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360096;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 427003 427966 . + . ID=Physo135180;Parent=Physo135180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 427003 427064 . + 0 ID=Physo135180;Parent=Physo135180;rank=1 scaffold_36 . exon 427003 427064 . + . ID=Physo135180.1;Parent=Physo135180;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 427238 427290 . + 0 ID=Physo135180;Parent=Physo135180;rank=2 scaffold_36 . exon 427238 427290 . + . ID=Physo135180.2;Parent=Physo135180;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 427369 427884 . + 0 ID=Physo135180;Parent=Physo135180;rank=3 scaffold_36 . exon 427369 427884 . + . ID=Physo135180.3;Parent=Physo135180;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 427920 427966 . + 0 ID=Physo135180;Parent=Physo135180;rank=4 scaffold_36 . exon 427920 427966 . + . ID=Physo135180.4;Parent=Physo135180;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 ensembl protein_coding_gene 428379 431031 . - . ID=Physo135181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360097;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 428379 431031 . - . ID=Physo135181;Parent=Physo135181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 428379 429441 . - 0 ID=Physo135181;Parent=Physo135181;rank=3 scaffold_36 . exon 428379 429441 . - . ID=Physo135181.3;Parent=Physo135181;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 429938 430184 . - 0 ID=Physo135181;Parent=Physo135181;rank=2 scaffold_36 . CDS 430563 431031 . - 0 ID=Physo135181;Parent=Physo135181;rank=1 scaffold_36 . repeat_region 431969 431977 . ? . description=dust scaffold_36 . repeat_region 433549 433562 . ? . description=dust scaffold_36 . repeat_region 436871 436987 . ? . description=trf scaffold_36 . repeat_region 437836 437902 . ? . description=trf scaffold_36 . repeat_region 437836 437913 . ? . description=trf scaffold_36 . repeat_region 437856 437915 . ? . description=dust scaffold_36 . repeat_region 438007 438031 . ? . description=dust scaffold_36 . repeat_region 438007 438031 . ? . description=trf scaffold_36 . exon 429938 430184 . - . ID=Physo135181.2;Parent=Physo135181;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_36 . exon 430563 431031 . - . ID=Physo135181.1;Parent=Physo135181;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 432333 432989 . + . ID=Physo157165;biotype=protein_coding;external_name=C_scaffold_36000007;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 432333 432989 . + . ID=Physo157165;Parent=Physo157165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 432333 432989 . + 0 ID=Physo157165;Parent=Physo157165;rank=1 scaffold_36 . exon 432333 432989 . + . ID=Physo157165.1;Parent=Physo157165;constitutive=1;rank=1 scaffold_36 . biological_region 441716 441718 0.999 + . logic_name=eponine scaffold_36 ensembl pseudogenic_tRNA 442827 442899 . - . ID=EPrPSOG00000000090;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_36 ensembl transcript 442827 442899 . - . ID=EPrPSOT00000000090;Parent=EPrPSOG00000000090;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_36 . exon 442827 442899 . - . ID=EPrPSOE00000000090;Parent=EPrPSOT00000000090;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 446463 446960 . + . ID=Physo135182;biotype=protein_coding;description=PsAvh113 [Source:UniProtKB/TrEMBL%3BAcc:E0W527];external_name=estExt_fgenesh1_pg.C_360098;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 446463 446960 . + . ID=Physo135182;Parent=Physo135182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 446463 446960 . + 0 ID=Physo135182;Parent=Physo135182;rank=1 scaffold_36 . exon 446463 446960 . + . ID=Physo135182.1;Parent=Physo135182;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 450554 452062 . - . ID=Physo135183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360099;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 450554 452062 . - . ID=Physo135183;Parent=Physo135183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 450554 452062 . - 0 ID=Physo135183;Parent=Physo135183;rank=1 scaffold_36 . exon 450554 452062 . - . ID=Physo135183.1;Parent=Physo135183;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 454629 456552 . + . ID=Physo135184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360100;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 454629 456552 . + . ID=Physo135184;Parent=Physo135184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 454629 455244 . + 0 ID=Physo135184;Parent=Physo135184;rank=1 scaffold_36 . exon 454629 455244 . + . ID=Physo135184.1;Parent=Physo135184;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 455313 455626 . + 0 ID=Physo135184;Parent=Physo135184;rank=2 scaffold_36 . exon 455313 455626 . + . ID=Physo135184.2;Parent=Physo135184;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 455801 456090 . + 0 ID=Physo135184;Parent=Physo135184;rank=3 scaffold_36 . exon 455801 456090 . + . ID=Physo135184.3;Parent=Physo135184;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 456174 456552 . + 0 ID=Physo135184;Parent=Physo135184;rank=4 scaffold_36 . exon 456174 456552 . + . ID=Physo135184.4;Parent=Physo135184;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 . repeat_region 459930 459961 . ? . description=trf scaffold_36 . repeat_region 460728 460747 . ? . description=trf scaffold_36 . biological_region 462287 462289 0.999 + . logic_name=eponine scaffold_36 . repeat_region 462801 462863 . ? . description=trf scaffold_36 . biological_region 462897 462898 0.999 + . logic_name=eponine scaffold_36 . biological_region 462915 462918 0.999 + . logic_name=eponine scaffold_36 . biological_region 462932 462933 0.999 + . logic_name=eponine scaffold_36 . biological_region 462949 462955 0.999 - . logic_name=eponine scaffold_36 . repeat_region 463006 463052 . ? . description=trf scaffold_36 . biological_region 463035 463038 0.999 + . logic_name=eponine scaffold_36 . biological_region 463053 463057 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 458544 459508 . + . ID=Physo135185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360101;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 458544 459508 . + . ID=Physo135185;Parent=Physo135185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 458544 459474 . + 0 ID=Physo135185;Parent=Physo135185;rank=1 scaffold_36 . exon 458544 459474 . + . ID=Physo135185.1;Parent=Physo135185;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 459504 459508 . + 0 ID=Physo135185;Parent=Physo135185;rank=2 scaffold_36 . exon 459504 459508 . + . ID=Physo135185.2;Parent=Physo135185;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 ensembl protein_coding_gene 460463 461815 . - . ID=Physo135186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360102;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 460463 461815 . - . ID=Physo135186;Parent=Physo135186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 460463 461680 . - 0 ID=Physo135186;Parent=Physo135186;rank=2 scaffold_36 . exon 460463 461680 . - . ID=Physo135186.2;Parent=Physo135186;constitutive=1;rank=2 scaffold_36 . CDS 461738 461815 . - 0 ID=Physo135186;Parent=Physo135186;rank=1 scaffold_36 . exon 461738 461815 . - . ID=Physo135186.1;Parent=Physo135186;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 462511 464193 . + . ID=Physo135187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360103;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 462511 464193 . + . ID=Physo135187;Parent=Physo135187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 462511 462625 . + 0 ID=Physo135187;Parent=Physo135187;rank=1 scaffold_36 . exon 462511 462625 . + . ID=Physo135187.1;Parent=Physo135187;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 463144 463429 . + 0 ID=Physo135187;Parent=Physo135187;rank=2 scaffold_36 . exon 463144 463429 . + . ID=Physo135187.2;Parent=Physo135187;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_36 . CDS 463718 463854 . + 0 ID=Physo135187;Parent=Physo135187;rank=3 scaffold_36 . exon 463718 463854 . + . ID=Physo135187.3;Parent=Physo135187;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 463925 464193 . + 0 ID=Physo135187;Parent=Physo135187;rank=4 scaffold_36 . exon 463925 464193 . + . ID=Physo135187.4;Parent=Physo135187;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 ensembl protein_coding_gene 465668 466842 . + . ID=Physo135188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360104;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 465668 466842 . + . ID=Physo135188;Parent=Physo135188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 465668 465972 . + 0 ID=Physo135188;Parent=Physo135188;rank=1 scaffold_36 . exon 465668 465972 . + . ID=Physo135188.1;Parent=Physo135188;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 466090 466171 . + 0 ID=Physo135188;Parent=Physo135188;rank=2 scaffold_36 . exon 466090 466171 . + . ID=Physo135188.2;Parent=Physo135188;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 466292 466451 . + 0 ID=Physo135188;Parent=Physo135188;rank=3 scaffold_36 . exon 466292 466451 . + . ID=Physo135188.3;Parent=Physo135188;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_36 . CDS 466523 466606 . + 0 ID=Physo135188;Parent=Physo135188;rank=4 scaffold_36 . exon 466523 466606 . + . ID=Physo135188.4;Parent=Physo135188;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 466661 466842 . + 0 ID=Physo135188;Parent=Physo135188;rank=5 scaffold_36 . exon 466661 466842 . + . ID=Physo135188.5;Parent=Physo135188;constitutive=1;ensembl_phase=1;rank=5 scaffold_36 . repeat_region 468993 469005 . ? . description=dust scaffold_36 . repeat_region 474774 474783 . ? . description=dust scaffold_36 . repeat_region 478007 478014 . ? . description=dust scaffold_36 . repeat_region 478088 478097 . ? . description=dust scaffold_36 . repeat_region 478119 478127 . ? . description=dust scaffold_36 ensembl protein_coding_gene 469505 471727 . - . ID=Physo108854;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360008;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 469505 471727 . - . ID=Physo108854;Parent=Physo108854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 469505 469675 . - . ID=Physo108854.2;Parent=Physo108854;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_36 . CDS 469610 469675 . - 0 ID=Physo108854;Parent=Physo108854;rank=2 scaffold_36 . CDS 469749 471680 . - 0 ID=Physo108854;Parent=Physo108854;rank=1 scaffold_36 . exon 469749 471727 . - . ID=Physo108854.1;Parent=Physo108854;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 ensembl protein_coding_gene 476900 477662 . - . ID=Physo116808;biotype=protein_coding;external_name=estExt_Genewise1.C_360063;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 476900 477662 . - . ID=Physo116808;Parent=Physo116808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 476900 477077 . - . ID=Physo116808.3;Parent=Physo116808;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_36 . exon 477102 477179 . - . ID=Physo116808.2;Parent=Physo116808;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_36 . exon 477226 477662 . - . ID=Physo116808.1;Parent=Physo116808;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 477475 477660 . - 0 ID=Physo116808;Parent=Physo116808;rank=1 scaffold_36 ensembl protein_coding_gene 469022 469420 . + . ID=Physo135189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360105;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 469022 469420 . + . ID=Physo135189;Parent=Physo135189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 469022 469420 . + 0 ID=Physo135189;Parent=Physo135189;rank=1 scaffold_36 . exon 469022 469420 . + . ID=Physo135189.1;Parent=Physo135189;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 472021 473031 . + . ID=Physo135191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360107;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 472021 473031 . + . ID=Physo135191;Parent=Physo135191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 472021 473031 . + 0 ID=Physo135191;Parent=Physo135191;rank=1 scaffold_36 . exon 472021 473031 . + . ID=Physo135191.1;Parent=Physo135191;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 473132 474167 . - . ID=Physo135192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360108;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 473132 474167 . - . ID=Physo135192;Parent=Physo135192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 473132 473274 . - 0 ID=Physo135192;Parent=Physo135192;rank=4 scaffold_36 . exon 473132 473274 . - . ID=Physo135192.4;Parent=Physo135192;constitutive=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 473307 473411 . - 0 ID=Physo135192;Parent=Physo135192;rank=3 scaffold_36 . exon 473307 473411 . - . ID=Physo135192.3;Parent=Physo135192;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_36 . CDS 473462 473866 . - 0 ID=Physo135192;Parent=Physo135192;rank=2 scaffold_36 . exon 473462 473866 . - . ID=Physo135192.2;Parent=Physo135192;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 474065 474167 . - 0 ID=Physo135192;Parent=Physo135192;rank=1 scaffold_36 . exon 474065 474167 . - . ID=Physo135192.1;Parent=Physo135192;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 476177 476688 . - . ID=Physo135193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360109;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 476177 476688 . - . ID=Physo135193;Parent=Physo135193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 476177 476435 . - 0 ID=Physo135193;Parent=Physo135193;rank=2 scaffold_36 . exon 476177 476435 . - . ID=Physo135193.2;Parent=Physo135193;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 476486 476688 . - 0 ID=Physo135193;Parent=Physo135193;rank=1 scaffold_36 . exon 476486 476688 . - . ID=Physo135193.1;Parent=Physo135193;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . repeat_region 481087 481114 . ? . description=trf scaffold_36 . repeat_region 481087 481114 . ? . description=trf scaffold_36 . repeat_region 486121 486212 . + . description=GypsyPi-1c_I-int scaffold_36 . repeat_region 487214 487241 . ? . description=trf scaffold_36 . repeat_region 487214 487241 . ? . description=trf scaffold_36 . biological_region 487778 487784 0.999 + . logic_name=eponine scaffold_36 . biological_region 487855 487856 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 480829 487201 . + . ID=Physo108855;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360009;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 480829 487201 . + . ID=Physo108855;Parent=Physo108855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 480829 480897 . + 0 ID=Physo108855;Parent=Physo108855;rank=1 scaffold_36 . exon 480829 480897 . + . ID=Physo108855.1;Parent=Physo108855;constitutive=1;rank=1 scaffold_36 . CDS 481366 481437 . + 0 ID=Physo108855;Parent=Physo108855;rank=2 scaffold_36 . exon 481366 481437 . + . ID=Physo108855.2;Parent=Physo108855;constitutive=1;rank=2 scaffold_36 . CDS 483907 484123 . + 0 ID=Physo108855;Parent=Physo108855;rank=3 scaffold_36 . exon 483907 484123 . + . ID=Physo108855.3;Parent=Physo108855;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_36 . CDS 484172 484813 . + 0 ID=Physo108855;Parent=Physo108855;rank=4 scaffold_36 . exon 484172 484813 . + . ID=Physo108855.4;Parent=Physo108855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_36 . CDS 484844 485139 . + 0 ID=Physo108855;Parent=Physo108855;rank=5 scaffold_36 . exon 484844 485139 . + . ID=Physo108855.5;Parent=Physo108855;constitutive=1;ensembl_phase=1;rank=5 scaffold_36 . CDS 485500 485699 . + 0 ID=Physo108855;Parent=Physo108855;rank=6 scaffold_36 . exon 485500 485699 . + . ID=Physo108855.6;Parent=Physo108855;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_36 . CDS 485730 486580 . + 0 ID=Physo108855;Parent=Physo108855;rank=7 scaffold_36 . exon 485730 486580 . + . ID=Physo108855.7;Parent=Physo108855;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_36 . CDS 486614 487039 . + 0 ID=Physo108855;Parent=Physo108855;rank=8 scaffold_36 . exon 486614 487039 . + . ID=Physo108855.8;Parent=Physo108855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_36 . CDS 487125 487201 . + 0 ID=Physo108855;Parent=Physo108855;rank=9 scaffold_36 . exon 487125 487201 . + . ID=Physo108855.9;Parent=Physo108855;constitutive=1;ensembl_phase=1;rank=9 scaffold_36 ensembl protein_coding_gene 493371 493778 . - . ID=Physo116811;biotype=protein_coding;external_name=estExt_Genewise1.C_360066;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 493371 493778 . - . ID=Physo116811;Parent=Physo116811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 493371 493691 . - 0 ID=Physo116811;Parent=Physo116811;rank=1 scaffold_36 . exon 493371 493778 . - . ID=Physo116811.1;Parent=Physo116811;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . repeat_region 499172 499180 . ? . description=dust scaffold_36 . repeat_region 499525 499652 . ? . description=trf scaffold_36 . repeat_region 499612 499682 . ? . description=trf scaffold_36 . biological_region 500094 500096 0.999 - . logic_name=eponine scaffold_36 . repeat_region 500239 500285 . ? . description=trf scaffold_36 . biological_region 502740 502743 0.999 + . logic_name=eponine scaffold_36 . biological_region 502774 502781 0.999 + . logic_name=eponine scaffold_36 . biological_region 502825 502833 0.999 - . logic_name=eponine scaffold_36 . biological_region 503200 503202 0.999 - . logic_name=eponine scaffold_36 . repeat_region 503358 503731 . ? . description=dust scaffold_36 . repeat_region 503862 503878 . ? . description=dust scaffold_36 . biological_region 503983 503988 0.999 - . logic_name=eponine scaffold_36 . biological_region 504010 504014 0.999 - . logic_name=eponine scaffold_36 . biological_region 504064 504068 0.999 - . logic_name=eponine scaffold_36 . biological_region 504860 504867 0.999 + . logic_name=eponine scaffold_36 . biological_region 504919 504921 0.999 - . logic_name=eponine scaffold_36 . biological_region 505559 505561 0.999 + . logic_name=eponine scaffold_36 . biological_region 506078 506081 0.999 - . logic_name=eponine scaffold_36 . biological_region 506134 506136 0.999 + . logic_name=eponine scaffold_36 . biological_region 507684 507685 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 500876 501590 . + . ID=Physo135195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360111;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 500876 501590 . + . ID=Physo135195;Parent=Physo135195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 500876 501444 . + . ID=Physo135195.1;Parent=Physo135195;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 500980 501444 . + 0 ID=Physo135195;Parent=Physo135195;rank=1 scaffold_36 . CDS 501477 501590 . + 0 ID=Physo135195;Parent=Physo135195;rank=2 scaffold_36 . exon 501477 501590 . + . ID=Physo135195.2;Parent=Physo135195;constitutive=1;rank=2 scaffold_36 ensembl protein_coding_gene 506134 506887 . - . ID=Physo135196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360112;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 506134 506887 . - . ID=Physo135196;Parent=Physo135196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 506134 506214 . - 0 ID=Physo135196;Parent=Physo135196;rank=3 scaffold_36 . exon 506134 506214 . - . ID=Physo135196.3;Parent=Physo135196;constitutive=1;rank=3 scaffold_36 . CDS 506290 506430 . - 0 ID=Physo135196;Parent=Physo135196;rank=2 scaffold_36 . exon 506290 506430 . - . ID=Physo135196.2;Parent=Physo135196;constitutive=1;rank=2 scaffold_36 . CDS 506516 506887 . - 0 ID=Physo135196;Parent=Physo135196;rank=1 scaffold_36 . exon 506516 506887 . - . ID=Physo135196.1;Parent=Physo135196;constitutive=1;rank=1 scaffold_36 . repeat_region 513326 515649 . + . description=GypsyPi-1c_I-int scaffold_36 ensembl protein_coding_gene 508702 510166 . + . ID=Physo135197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360113;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 508702 510166 . + . ID=Physo135197;Parent=Physo135197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 508702 508815 . + 0 ID=Physo135197;Parent=Physo135197;rank=1 scaffold_36 . exon 508702 508815 . + . ID=Physo135197.1;Parent=Physo135197;constitutive=1;rank=1 scaffold_36 . CDS 508943 510166 . + 0 ID=Physo135197;Parent=Physo135197;rank=2 scaffold_36 . exon 508943 510166 . + . ID=Physo135197.2;Parent=Physo135197;constitutive=1;rank=2 scaffold_36 ensembl protein_coding_gene 512567 516829 . + . ID=Physo135198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360114;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 512567 516829 . + . ID=Physo135198;Parent=Physo135198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 512567 512588 . + 0 ID=Physo135198;Parent=Physo135198;rank=1 scaffold_36 . exon 512567 512588 . + . ID=Physo135198.1;Parent=Physo135198;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 512808 515415 . + 0 ID=Physo135198;Parent=Physo135198;rank=2 scaffold_36 . exon 512808 515415 . + . ID=Physo135198.2;Parent=Physo135198;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_36 . CDS 515530 516829 . + 0 ID=Physo135198;Parent=Physo135198;rank=3 scaffold_36 . exon 515530 516829 . + . ID=Physo135198.3;Parent=Physo135198;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . biological_region 518527 518530 0.999 - . logic_name=eponine scaffold_36 . biological_region 519168 519170 0.999 + . logic_name=eponine scaffold_36 . biological_region 519222 519229 0.999 - . logic_name=eponine scaffold_36 . biological_region 520021 520025 0.999 + . logic_name=eponine scaffold_36 . biological_region 520075 520079 0.999 + . logic_name=eponine scaffold_36 . biological_region 520101 520106 0.999 + . logic_name=eponine scaffold_36 . repeat_region 520210 520226 . ? . description=dust scaffold_36 . repeat_region 520345 520518 . ? . description=dust scaffold_36 . biological_region 520820 520826 0.999 + . logic_name=eponine scaffold_36 . biological_region 520938 520945 0.999 + . logic_name=eponine scaffold_36 . biological_region 521230 521231 0.999 + . logic_name=eponine scaffold_36 . biological_region 521245 521249 0.999 + . logic_name=eponine scaffold_36 . biological_region 521263 521270 0.999 + . logic_name=eponine scaffold_36 . biological_region 521297 521308 0.999 - . logic_name=eponine scaffold_36 . biological_region 521319 521329 0.999 + . logic_name=eponine scaffold_36 . biological_region 521357 521364 0.999 + . logic_name=eponine scaffold_36 . repeat_region 521372 521409 . ? . description=dust scaffold_36 . repeat_region 521372 521409 . ? . description=trf scaffold_36 . biological_region 521377 521387 0.999 + . logic_name=eponine scaffold_36 . biological_region 521384 521390 0.999 - . logic_name=eponine scaffold_36 . biological_region 521441 521454 0.999 - . logic_name=eponine scaffold_36 . biological_region 521461 521464 0.999 + . logic_name=eponine scaffold_36 . biological_region 521471 521476 0.999 - . logic_name=eponine scaffold_36 . biological_region 521482 521487 0.999 - . logic_name=eponine scaffold_36 . biological_region 521499 521502 0.999 - . logic_name=eponine scaffold_36 . biological_region 521832 521837 0.999 - . logic_name=eponine scaffold_36 . repeat_region 522297 522320 . ? . description=trf scaffold_36 . repeat_region 522363 522387 . ? . description=trf scaffold_36 . biological_region 523115 523120 0.999 - . logic_name=eponine scaffold_36 . biological_region 523218 523225 0.999 - . logic_name=eponine scaffold_36 . biological_region 523266 523267 0.999 - . logic_name=eponine scaffold_36 . biological_region 527118 527121 0.999 + . logic_name=eponine scaffold_36 . repeat_region 527212 527253 . ? . description=dust scaffold_36 . repeat_region 527212 527253 . ? . description=trf scaffold_36 . biological_region 527350 527354 0.999 + . logic_name=eponine scaffold_36 . biological_region 527355 527360 0.999 - . logic_name=eponine scaffold_36 . biological_region 527469 527473 0.999 + . logic_name=eponine scaffold_36 . biological_region 527725 527728 0.999 - . logic_name=eponine scaffold_36 . repeat_region 527794 527814 . ? . description=trf scaffold_36 . biological_region 527799 527807 0.999 - . logic_name=eponine scaffold_36 . biological_region 527856 527862 0.999 + . logic_name=eponine scaffold_36 . biological_region 527951 527954 0.999 + . logic_name=eponine scaffold_36 . biological_region 528018 528020 0.999 - . logic_name=eponine scaffold_36 . biological_region 528039 528044 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 521037 521671 . + . ID=Physo135199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360115;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 521037 521671 . + . ID=Physo135199;Parent=Physo135199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 521037 521671 . + . ID=Physo135199.1;Parent=Physo135199;constitutive=1;ensembl_phase=-1;rank=1 scaffold_36 . CDS 521039 521671 . + 0 ID=Physo135199;Parent=Physo135199;rank=1 scaffold_36 ensembl protein_coding_gene 522435 528047 . - . ID=Physo135200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360116;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 522435 528047 . - . ID=Physo135200;Parent=Physo135200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 522435 528047 . - 0 ID=Physo135200;Parent=Physo135200;rank=1 scaffold_36 . exon 522435 528047 . - . ID=Physo135200.1;Parent=Physo135200;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 530039 531040 . - . ID=Physo108856;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360010;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 530039 531040 . - . ID=Physo108856;Parent=Physo108856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 530039 530521 . - . ID=Physo108856.3;Parent=Physo108856;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_36 . CDS 530040 530521 . - 0 ID=Physo108856;Parent=Physo108856;rank=3 scaffold_36 . CDS 530609 530914 . - 0 ID=Physo108856;Parent=Physo108856;rank=2 scaffold_36 . exon 530609 530914 . - . ID=Physo108856.2;Parent=Physo108856;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 530953 531040 . - 0 ID=Physo108856;Parent=Physo108856;rank=1 scaffold_36 . exon 530953 531040 . - . ID=Physo108856.1;Parent=Physo108856;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 ensembl protein_coding_gene 532436 533935 . - . ID=Physo135202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360118;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 532436 533935 . - . ID=Physo135202;Parent=Physo135202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 532436 533935 . - 0 ID=Physo135202;Parent=Physo135202;rank=1 scaffold_36 . exon 532436 533935 . - . ID=Physo135202.1;Parent=Physo135202;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 535069 536722 . + . ID=Physo157170;biotype=protein_coding;external_name=C_scaffold_36000012;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 535069 536722 . + . ID=Physo157170;Parent=Physo157170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 535069 535108 . + 0 ID=Physo157170;Parent=Physo157170;rank=1 scaffold_36 . exon 535069 535108 . + . ID=Physo157170.1;Parent=Physo157170;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 535211 535414 . + 0 ID=Physo157170;Parent=Physo157170;rank=2 scaffold_36 . exon 535211 535414 . + . ID=Physo157170.2;Parent=Physo157170;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 535485 536526 . + 0 ID=Physo157170;Parent=Physo157170;rank=3 scaffold_36 . exon 535485 536526 . + . ID=Physo157170.3;Parent=Physo157170;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_36 . CDS 536548 536722 . + 0 ID=Physo157170;Parent=Physo157170;rank=4 scaffold_36 . exon 536548 536722 . + . ID=Physo157170.4;Parent=Physo157170;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 . biological_region 538450 538450 0.999 + . logic_name=eponine scaffold_36 . biological_region 540934 540936 0.999 + . logic_name=eponine scaffold_36 . biological_region 540959 540961 0.999 + . logic_name=eponine scaffold_36 . biological_region 541185 541186 0.999 + . logic_name=eponine scaffold_36 . biological_region 541251 541252 0.999 + . logic_name=eponine scaffold_36 . biological_region 541812 541816 0.999 - . logic_name=eponine scaffold_36 . biological_region 541952 541954 0.999 + . logic_name=eponine scaffold_36 . biological_region 542204 542210 0.999 - . logic_name=eponine scaffold_36 . biological_region 542616 542620 0.999 + . logic_name=eponine scaffold_36 . biological_region 543066 543066 0.999 - . logic_name=eponine scaffold_36 . biological_region 543162 543166 0.999 - . logic_name=eponine scaffold_36 . biological_region 543721 543724 0.999 + . logic_name=eponine scaffold_36 . biological_region 543748 543751 0.999 + . logic_name=eponine scaffold_36 . biological_region 543964 543969 0.999 + . logic_name=eponine scaffold_36 . biological_region 543986 543988 0.999 + . logic_name=eponine scaffold_36 . biological_region 544898 544904 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 538628 540076 . + . ID=Physo135204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360120;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 538628 540076 . + . ID=Physo135204;Parent=Physo135204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 538628 540076 . + 0 ID=Physo135204;Parent=Physo135204;rank=1 scaffold_36 . exon 538628 540076 . + . ID=Physo135204.1;Parent=Physo135204;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 544540 550171 . + . ID=Physo135207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360123;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 544540 550171 . + . ID=Physo135207;Parent=Physo135207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 544540 545888 . + 0 ID=Physo135207;Parent=Physo135207;rank=1 scaffold_36 . exon 544540 545888 . + . ID=Physo135207.1;Parent=Physo135207;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 545965 550171 . + 0 ID=Physo135207;Parent=Physo135207;rank=2 scaffold_36 . exon 545965 550171 . + . ID=Physo135207.2;Parent=Physo135207;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 ensembl protein_coding_gene 540435 542215 . - . ID=Physo157171;biotype=protein_coding;external_name=C_scaffold_36000013;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 540435 542215 . - . ID=Physo157171;Parent=Physo157171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 540435 541670 . - 0 ID=Physo157171;Parent=Physo157171;rank=2 scaffold_36 . exon 540435 541670 . - . ID=Physo157171.2;Parent=Physo157171;constitutive=1;rank=2 scaffold_36 . CDS 541754 542215 . - 0 ID=Physo157171;Parent=Physo157171;rank=1 scaffold_36 . exon 541754 542215 . - . ID=Physo157171.1;Parent=Physo157171;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 542879 543847 . - . ID=Physo157174;biotype=protein_coding;external_name=C_scaffold_36000016;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 542879 543847 . - . ID=Physo157174;Parent=Physo157174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 542879 543228 . - 0 ID=Physo157174;Parent=Physo157174;rank=2 scaffold_36 . exon 542879 543228 . - . ID=Physo157174.2;Parent=Physo157174;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 543316 543847 . - 0 ID=Physo157174;Parent=Physo157174;rank=1 scaffold_36 . exon 543316 543847 . - . ID=Physo157174.1;Parent=Physo157174;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . repeat_region 550239 550247 . ? . description=dust scaffold_36 . repeat_region 553461 553469 . ? . description=dust scaffold_36 ensembl protein_coding_gene 550513 552556 . + . ID=Physo108857;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360011;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 550513 552556 . + . ID=Physo108857;Parent=Physo108857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 550513 550534 . + 0 ID=Physo108857;Parent=Physo108857;rank=1 scaffold_36 . exon 550513 550534 . + . ID=Physo108857.1;Parent=Physo108857;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . CDS 550625 552417 . + 0 ID=Physo108857;Parent=Physo108857;rank=2 scaffold_36 . exon 550625 552417 . + . ID=Physo108857.2;Parent=Physo108857;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . CDS 552491 552556 . + 0 ID=Physo108857;Parent=Physo108857;rank=3 scaffold_36 . exon 552491 552556 . + . ID=Physo108857.3;Parent=Physo108857;constitutive=1;rank=3 scaffold_36 ensembl protein_coding_gene 556884 557276 . + . ID=Physo135209;biotype=protein_coding;description=PsAvh8 [Source:UniProtKB/TrEMBL%3BAcc:E0W528];external_name=estExt_fgenesh1_pg.C_360125;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 556884 557276 . + . ID=Physo135209;Parent=Physo135209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 556884 557276 . + 0 ID=Physo135209;Parent=Physo135209;rank=1 scaffold_36 . exon 556884 557276 . + . ID=Physo135209.1;Parent=Physo135209;constitutive=1;rank=1 scaffold_36 . biological_region 558955 558955 0.999 - . logic_name=eponine scaffold_36 . repeat_region 561601 561766 . ? . description=trf scaffold_36 . repeat_region 561601 561770 . ? . description=trf scaffold_36 . biological_region 562135 562135 0.999 - . logic_name=eponine scaffold_36 . biological_region 562865 562866 0.999 + . logic_name=eponine scaffold_36 . biological_region 562885 562886 0.999 + . logic_name=eponine scaffold_36 . biological_region 562984 562985 0.999 - . logic_name=eponine scaffold_36 . biological_region 563003 563007 0.999 + . logic_name=eponine scaffold_36 . biological_region 563026 563032 0.999 - . logic_name=eponine scaffold_36 . biological_region 563048 563050 0.999 - . logic_name=eponine scaffold_36 . biological_region 563082 563086 0.999 + . logic_name=eponine scaffold_36 . biological_region 563194 563199 0.999 - . logic_name=eponine scaffold_36 . biological_region 563269 563276 0.999 + . logic_name=eponine scaffold_36 . biological_region 563290 563302 0.999 + . logic_name=eponine scaffold_36 . biological_region 563310 563313 0.999 - . logic_name=eponine scaffold_36 . biological_region 563324 563329 0.999 - . logic_name=eponine scaffold_36 . biological_region 563345 563350 0.999 + . logic_name=eponine scaffold_36 . biological_region 563381 563387 0.999 + . logic_name=eponine scaffold_36 . biological_region 563472 563477 0.999 + . logic_name=eponine scaffold_36 . biological_region 563500 563506 0.999 - . logic_name=eponine scaffold_36 . biological_region 563527 563530 0.999 + . logic_name=eponine scaffold_36 . biological_region 563527 563530 0.999 - . logic_name=eponine scaffold_36 . biological_region 563550 563557 0.999 - . logic_name=eponine scaffold_36 . biological_region 563555 563559 0.999 + . logic_name=eponine scaffold_36 . biological_region 563662 563664 0.999 - . logic_name=eponine scaffold_36 . biological_region 563734 563734 0.999 - . logic_name=eponine scaffold_36 . biological_region 563771 563773 0.999 + . logic_name=eponine scaffold_36 . biological_region 563772 563777 0.999 - . logic_name=eponine scaffold_36 . biological_region 563824 563829 0.999 + . logic_name=eponine scaffold_36 . biological_region 563946 563948 0.999 - . logic_name=eponine scaffold_36 . biological_region 564090 564091 0.999 - . logic_name=eponine scaffold_36 . biological_region 564092 564096 0.999 + . logic_name=eponine scaffold_36 . biological_region 564112 564116 0.999 - . logic_name=eponine scaffold_36 . biological_region 564519 564520 0.999 + . logic_name=eponine scaffold_36 . biological_region 566573 566575 0.999 + . logic_name=eponine scaffold_36 ensembl protein_coding_gene 558352 559452 . - . ID=Physo108858;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360012;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 558352 559452 . - . ID=Physo108858;Parent=Physo108858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 558352 558375 . - . ID=Physo108858.2;Parent=Physo108858;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_36 . exon 558444 559452 . - . ID=Physo108858.1;Parent=Physo108858;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_36 . CDS 558463 559452 . - 0 ID=Physo108858;Parent=Physo108858;rank=1 scaffold_36 ensembl protein_coding_gene 562922 564607 . + . ID=Physo135211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360127;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 562922 564607 . + . ID=Physo135211;Parent=Physo135211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 562922 564607 . + 0 ID=Physo135211;Parent=Physo135211;rank=1 scaffold_36 . exon 562922 564607 . + . ID=Physo135211.1;Parent=Physo135211;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 564853 568154 . + . ID=Physo135212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360128;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 564853 568154 . + . ID=Physo135212;Parent=Physo135212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 564853 568110 . + 0 ID=Physo135212;Parent=Physo135212;rank=1 scaffold_36 . exon 564853 568110 . + . ID=Physo135212.1;Parent=Physo135212;constitutive=1;rank=1 scaffold_36 . CDS 568140 568154 . + 0 ID=Physo135212;Parent=Physo135212;rank=2 scaffold_36 . repeat_region 572230 572242 . ? . description=dust scaffold_36 . repeat_region 572798 572847 . ? . description=dust scaffold_36 . exon 568140 568154 . + . ID=Physo135212.2;Parent=Physo135212;constitutive=1;rank=2 scaffold_36 ensembl protein_coding_gene 568363 569760 . - . ID=Physo135213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360129;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 568363 569760 . - . ID=Physo135213;Parent=Physo135213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 568363 569760 . - 0 ID=Physo135213;Parent=Physo135213;rank=1 scaffold_36 . exon 568363 569760 . - . ID=Physo135213.1;Parent=Physo135213;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 570382 572130 . - . ID=Physo135214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360130;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 570382 572130 . - . ID=Physo135214;Parent=Physo135214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 570382 572130 . - 0 ID=Physo135214;Parent=Physo135214;rank=1 scaffold_36 . exon 570382 572130 . - . ID=Physo135214.1;Parent=Physo135214;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 573061 574893 . - . ID=Physo135215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360131;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 573061 574893 . - . ID=Physo135215;Parent=Physo135215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 573061 574893 . - 0 ID=Physo135215;Parent=Physo135215;rank=1 scaffold_36 . exon 573061 574893 . - . ID=Physo135215.1;Parent=Physo135215;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 576180 579089 . - . ID=Physo135216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360132;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 576180 579089 . - . ID=Physo135216;Parent=Physo135216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 576180 579089 . - 0 ID=Physo135216;Parent=Physo135216;rank=1 scaffold_36 . exon 576180 579089 . - . ID=Physo135216.1;Parent=Physo135216;constitutive=1;rank=1 scaffold_36 . biological_region 577984 577989 0.999 - . logic_name=eponine scaffold_36 . biological_region 578376 578378 0.999 - . logic_name=eponine scaffold_36 . biological_region 578433 578433 0.999 + . logic_name=eponine scaffold_36 . biological_region 578565 578569 0.999 + . logic_name=eponine scaffold_36 . biological_region 578567 578570 0.999 - . logic_name=eponine scaffold_36 . biological_region 578830 578835 0.999 + . logic_name=eponine scaffold_36 . biological_region 578867 578872 0.999 - . logic_name=eponine scaffold_36 . biological_region 578899 578902 0.999 - . logic_name=eponine scaffold_36 . biological_region 578923 578926 0.999 - . logic_name=eponine scaffold_36 . biological_region 578970 578971 0.999 - . logic_name=eponine scaffold_36 . repeat_region 579191 579227 . ? . description=trf scaffold_36 . repeat_region 579191 579227 . ? . description=trf scaffold_36 . repeat_region 579191 579229 . ? . description=trf scaffold_36 . biological_region 579811 579814 0.999 + . logic_name=eponine scaffold_36 . biological_region 580802 580809 0.999 + . logic_name=eponine scaffold_36 . biological_region 581184 581187 0.999 + . logic_name=eponine scaffold_36 . biological_region 583575 583576 0.999 - . logic_name=eponine scaffold_36 . biological_region 583611 583614 0.999 - . logic_name=eponine scaffold_36 . biological_region 583825 583828 0.999 - . logic_name=eponine scaffold_36 . biological_region 583856 583856 0.999 - . logic_name=eponine scaffold_36 . biological_region 586536 586540 0.999 + . logic_name=eponine scaffold_36 . biological_region 587123 587126 0.999 + . logic_name=eponine scaffold_36 . biological_region 587166 587168 0.999 - . logic_name=eponine scaffold_36 . biological_region 587648 587648 0.999 - . logic_name=eponine scaffold_36 . biological_region 587918 587924 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 580362 582044 . - . ID=Physo135217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360133;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 580362 582044 . - . ID=Physo135217;Parent=Physo135217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 580362 582044 . - 0 ID=Physo135217;Parent=Physo135217;rank=1 scaffold_36 . exon 580362 582044 . - . ID=Physo135217.1;Parent=Physo135217;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 585209 587935 . - . ID=Physo135218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360134;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 585209 587935 . - . ID=Physo135218;Parent=Physo135218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . exon 585209 587935 . - . ID=Physo135218.1;Parent=Physo135218;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_36 . CDS 585299 587935 . - 0 ID=Physo135218;Parent=Physo135218;rank=1 scaffold_36 ensembl protein_coding_gene 588615 590294 . - . ID=Physo135219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360135;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 588615 590294 . - . ID=Physo135219;Parent=Physo135219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 588615 589235 . - 0 ID=Physo135219;Parent=Physo135219;rank=3 scaffold_36 . exon 588615 589235 . - . ID=Physo135219.3;Parent=Physo135219;constitutive=1;rank=3 scaffold_36 . CDS 589298 590024 . - 0 ID=Physo135219;Parent=Physo135219;rank=2 scaffold_36 . exon 589298 590024 . - . ID=Physo135219.2;Parent=Physo135219;constitutive=1;ensembl_phase=2;rank=2 scaffold_36 . CDS 590059 590294 . - 0 ID=Physo135219;Parent=Physo135219;rank=1 scaffold_36 . exon 590059 590294 . - . ID=Physo135219.1;Parent=Physo135219;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 ensembl protein_coding_gene 592644 593961 . + . ID=Physo135220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360136;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 592644 593961 . + . ID=Physo135220;Parent=Physo135220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 592644 593017 . + 0 ID=Physo135220;Parent=Physo135220;rank=1 scaffold_36 . exon 592644 593017 . + . ID=Physo135220.1;Parent=Physo135220;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 593037 593871 . + 0 ID=Physo135220;Parent=Physo135220;rank=2 scaffold_36 . exon 593037 593961 . + . ID=Physo135220.2;Parent=Physo135220;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_36 ensembl protein_coding_gene 594512 596182 . + . ID=Physo135221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360137;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 594512 596182 . + . ID=Physo135221;Parent=Physo135221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 594512 596182 . + 0 ID=Physo135221;Parent=Physo135221;rank=1 scaffold_36 . exon 594512 596182 . + . ID=Physo135221.1;Parent=Physo135221;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 596622 598280 . + . ID=Physo135222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360138;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 596622 598280 . + . ID=Physo135222;Parent=Physo135222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 596622 598280 . + 0 ID=Physo135222;Parent=Physo135222;rank=1 scaffold_36 . exon 596622 598280 . + . ID=Physo135222.1;Parent=Physo135222;constitutive=1;rank=1 scaffold_36 . biological_region 599100 599103 0.999 - . logic_name=eponine scaffold_36 . biological_region 599119 599125 0.999 - . logic_name=eponine scaffold_36 . biological_region 599121 599125 0.999 + . logic_name=eponine scaffold_36 . biological_region 599173 599181 0.999 + . logic_name=eponine scaffold_36 . biological_region 599181 599186 0.999 - . logic_name=eponine scaffold_36 . biological_region 599238 599241 0.999 + . logic_name=eponine scaffold_36 . biological_region 599267 599274 0.999 - . logic_name=eponine scaffold_36 . biological_region 599673 599676 0.999 + . logic_name=eponine scaffold_36 . biological_region 599740 599742 0.999 + . logic_name=eponine scaffold_36 . biological_region 600183 600185 0.999 - . logic_name=eponine scaffold_36 . biological_region 601640 601642 0.999 - . logic_name=eponine scaffold_36 . biological_region 601640 601643 0.999 + . logic_name=eponine scaffold_36 . biological_region 602375 602378 0.999 + . logic_name=eponine scaffold_36 . biological_region 602410 602418 0.999 - . logic_name=eponine scaffold_36 . biological_region 602427 602430 0.999 + . logic_name=eponine scaffold_36 . biological_region 602432 602440 0.999 - . logic_name=eponine scaffold_36 . biological_region 602467 602474 0.999 + . logic_name=eponine scaffold_36 . biological_region 602480 602483 0.999 - . logic_name=eponine scaffold_36 . biological_region 602559 602560 0.999 - . logic_name=eponine scaffold_36 . biological_region 603024 603026 0.999 - . logic_name=eponine scaffold_36 . biological_region 603371 603372 0.999 + . logic_name=eponine scaffold_36 . biological_region 603824 603828 0.999 - . logic_name=eponine scaffold_36 . biological_region 603879 603885 0.999 + . logic_name=eponine scaffold_36 . biological_region 603883 603889 0.999 - . logic_name=eponine scaffold_36 . biological_region 604679 604679 0.999 + . logic_name=eponine scaffold_36 . biological_region 604762 604765 0.999 - . logic_name=eponine scaffold_36 . biological_region 604868 604870 0.999 - . logic_name=eponine scaffold_36 . biological_region 605638 605645 0.999 + . logic_name=eponine scaffold_36 . biological_region 605813 605816 0.999 - . logic_name=eponine scaffold_36 . biological_region 606286 606286 0.999 - . logic_name=eponine scaffold_36 . biological_region 606594 606595 0.999 - . logic_name=eponine scaffold_36 ensembl protein_coding_gene 599023 600882 . + . ID=Physo135223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360139;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 599023 600882 . + . ID=Physo135223;Parent=Physo135223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 599023 600882 . + 0 ID=Physo135223;Parent=Physo135223;rank=1 scaffold_36 . exon 599023 600882 . + . ID=Physo135223.1;Parent=Physo135223;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 601005 601710 . - . ID=Physo135224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360140;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 601005 601710 . - . ID=Physo135224;Parent=Physo135224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 601005 601427 . - 0 ID=Physo135224;Parent=Physo135224;rank=2 scaffold_36 . exon 601005 601427 . - . ID=Physo135224.2;Parent=Physo135224;constitutive=1;rank=2 scaffold_36 . CDS 601489 601710 . - 0 ID=Physo135224;Parent=Physo135224;rank=1 scaffold_36 . exon 601489 601710 . - . ID=Physo135224.1;Parent=Physo135224;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 602295 604222 . + . ID=Physo135225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360141;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 602295 604222 . + . ID=Physo135225;Parent=Physo135225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 602295 604193 . + 0 ID=Physo135225;Parent=Physo135225;rank=1 scaffold_36 . exon 602295 604222 . + . ID=Physo135225.1;Parent=Physo135225;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_36 ensembl protein_coding_gene 604325 610964 . - . ID=Physo157176;biotype=protein_coding;external_name=C_scaffold_36000018;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 604325 610964 . - . ID=Physo157176;Parent=Physo157176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 604325 604588 . - 0 ID=Physo157176;Parent=Physo157176;rank=14 scaffold_36 . exon 604325 604588 . - . ID=Physo157176.14;Parent=Physo157176;constitutive=1;rank=14 scaffold_36 . CDS 604616 605017 . - 0 ID=Physo157176;Parent=Physo157176;rank=13 scaffold_36 . exon 604616 605017 . - . ID=Physo157176.13;Parent=Physo157176;constitutive=1;rank=13 scaffold_36 . CDS 605379 605519 . - 0 ID=Physo157176;Parent=Physo157176;rank=12 scaffold_36 . exon 605379 605519 . - . ID=Physo157176.12;Parent=Physo157176;constitutive=1;rank=12 scaffold_36 . CDS 605604 606257 . - 0 ID=Physo157176;Parent=Physo157176;rank=11 scaffold_36 . exon 605604 606257 . - . ID=Physo157176.11;Parent=Physo157176;constitutive=1;rank=11 scaffold_36 . CDS 606315 606503 . - 0 ID=Physo157176;Parent=Physo157176;rank=10 scaffold_36 . exon 606315 606503 . - . ID=Physo157176.10;Parent=Physo157176;constitutive=1;rank=10 scaffold_36 . CDS 606540 608057 . - 0 ID=Physo157176;Parent=Physo157176;rank=9 scaffold_36 . exon 606540 608057 . - . ID=Physo157176.9;Parent=Physo157176;constitutive=1;rank=9 scaffold_36 . CDS 608085 608821 . - 0 ID=Physo157176;Parent=Physo157176;rank=8 scaffold_36 . CDS 608879 609271 . - 0 ID=Physo157176;Parent=Physo157176;rank=7 scaffold_36 . CDS 609416 609805 . - 0 ID=Physo157176;Parent=Physo157176;rank=6 scaffold_36 . CDS 609830 610185 . - 0 ID=Physo157176;Parent=Physo157176;rank=5 scaffold_36 . CDS 610207 610349 . - 0 ID=Physo157176;Parent=Physo157176;rank=4 scaffold_36 . CDS 610440 610688 . - 0 ID=Physo157176;Parent=Physo157176;rank=3 scaffold_36 . CDS 610780 610862 . - 0 ID=Physo157176;Parent=Physo157176;rank=2 scaffold_36 . CDS 610925 610964 . - 0 ID=Physo157176;Parent=Physo157176;rank=1 scaffold_36 . repeat_region 608026 608063 . ? . description=trf scaffold_36 . repeat_region 610458 610571 . ? . description=dust scaffold_36 . repeat_region 610459 610493 . ? . description=trf scaffold_36 . repeat_region 610460 610571 . ? . description=trf scaffold_36 . repeat_region 610500 610544 . ? . description=trf scaffold_36 . repeat_region 610500 610544 . ? . description=trf scaffold_36 . repeat_region 610605 610668 . ? . description=dust scaffold_36 . repeat_region 614401 614948 . + . description=GypsyPi-1c_I-int scaffold_36 . repeat_region 615591 618505 . + . description=GypsyPi-1c_I-int scaffold_36 ensembl protein_coding_gene 617156 618753 . + . ID=Physo108860;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_360014;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 617156 618753 . + . ID=Physo108860;Parent=Physo108860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 617156 617212 . + 0 ID=Physo108860;Parent=Physo108860;rank=1 scaffold_36 . exon 617156 617212 . + . ID=Physo108860.1;Parent=Physo108860;constitutive=1;rank=1 scaffold_36 . CDS 617345 617458 . + 0 ID=Physo108860;Parent=Physo108860;rank=2 scaffold_36 . exon 617345 617458 . + . ID=Physo108860.2;Parent=Physo108860;constitutive=1;rank=2 scaffold_36 . CDS 617492 617868 . + 0 ID=Physo108860;Parent=Physo108860;rank=3 scaffold_36 . exon 617492 617868 . + . ID=Physo108860.3;Parent=Physo108860;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_36 . CDS 618726 618753 . + 0 ID=Physo108860;Parent=Physo108860;rank=4 scaffold_36 ensembl protein_coding_gene 613471 616573 . + . ID=Physo135228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360144;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 613471 616573 . + . ID=Physo135228;Parent=Physo135228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 613471 614121 . + 0 ID=Physo135228;Parent=Physo135228;rank=1 scaffold_36 . exon 613471 614121 . + . ID=Physo135228.1;Parent=Physo135228;constitutive=1;rank=1 scaffold_36 . CDS 614200 614275 . + 0 ID=Physo135228;Parent=Physo135228;rank=2 scaffold_36 . exon 614200 614275 . + . ID=Physo135228.2;Parent=Physo135228;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_36 . CDS 614676 614814 . + 0 ID=Physo135228;Parent=Physo135228;rank=3 scaffold_36 . exon 614676 614814 . + . ID=Physo135228.3;Parent=Physo135228;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_36 . CDS 614947 615206 . + 0 ID=Physo135228;Parent=Physo135228;rank=4 scaffold_36 . exon 614947 615206 . + . ID=Physo135228.4;Parent=Physo135228;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_36 . CDS 615241 615813 . + 0 ID=Physo135228;Parent=Physo135228;rank=5 scaffold_36 . exon 615241 615813 . + . ID=Physo135228.5;Parent=Physo135228;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_36 . CDS 615852 616573 . + 0 ID=Physo135228;Parent=Physo135228;rank=6 scaffold_36 . exon 615852 616573 . + . ID=Physo135228.6;Parent=Physo135228;constitutive=1;ensembl_phase=1;rank=6 scaffold_36 . exon 608085 608821 . - . ID=Physo157176.8;Parent=Physo157176;constitutive=1;ensembl_phase=1;rank=8 scaffold_36 . exon 608879 609271 . - . ID=Physo157176.7;Parent=Physo157176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_36 . exon 609416 609805 . - . ID=Physo157176.6;Parent=Physo157176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_36 . exon 609830 610185 . - . ID=Physo157176.5;Parent=Physo157176;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_36 . exon 610207 610349 . - . ID=Physo157176.4;Parent=Physo157176;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_36 . exon 610440 610688 . - . ID=Physo157176.3;Parent=Physo157176;constitutive=1;rank=3 scaffold_36 . exon 610780 610862 . - . ID=Physo157176.2;Parent=Physo157176;constitutive=1;ensembl_phase=1;rank=2 scaffold_36 . exon 610925 610964 . - . ID=Physo157176.1;Parent=Physo157176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_36 . biological_region 619357 619361 0.999 + . logic_name=eponine scaffold_36 . biological_region 619951 619956 0.999 + . logic_name=eponine scaffold_36 . biological_region 620823 620830 0.999 + . logic_name=eponine scaffold_36 . biological_region 620846 620849 0.999 + . logic_name=eponine scaffold_36 . biological_region 620922 620923 0.999 - . logic_name=eponine scaffold_36 . biological_region 622638 622639 0.999 + . logic_name=eponine scaffold_36 . biological_region 622848 622850 0.999 - . logic_name=eponine scaffold_36 . biological_region 622858 622862 0.999 - . logic_name=eponine scaffold_36 . biological_region 622872 622878 0.999 + . logic_name=eponine scaffold_36 . biological_region 622901 622904 0.999 + . logic_name=eponine scaffold_36 . biological_region 622932 622937 0.999 - . logic_name=eponine scaffold_36 . biological_region 622933 622937 0.999 + . logic_name=eponine scaffold_36 . biological_region 623291 623292 0.999 - . logic_name=eponine scaffold_36 . biological_region 623347 623350 0.999 + . logic_name=eponine scaffold_36 . biological_region 623795 623798 0.999 - . logic_name=eponine scaffold_36 . biological_region 623829 623834 0.999 - . logic_name=eponine scaffold_36 . biological_region 624062 624065 0.999 + . logic_name=eponine scaffold_36 . biological_region 624338 624345 0.999 - . logic_name=eponine scaffold_36 . biological_region 624361 624362 0.999 - . logic_name=eponine scaffold_36 . biological_region 624415 624421 0.999 + . logic_name=eponine scaffold_36 . biological_region 624507 624512 0.999 - . logic_name=eponine scaffold_36 . exon 618726 618753 . + . ID=Physo108860.4;Parent=Physo108860;constitutive=1;ensembl_phase=2;rank=4 scaffold_36 ensembl protein_coding_gene 619075 620217 . - . ID=Physo135230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360146;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 619075 620217 . - . ID=Physo135230;Parent=Physo135230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 619075 620217 . - 0 ID=Physo135230;Parent=Physo135230;rank=1 scaffold_36 . exon 619075 620217 . - . ID=Physo135230.1;Parent=Physo135230;constitutive=1;rank=1 scaffold_36 ensembl protein_coding_gene 622037 624771 . + . ID=Physo135231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_360147;logic_name=jgi_physo1_1 scaffold_36 ensembl transcript 622037 624771 . + . ID=Physo135231;Parent=Physo135231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_36 . CDS 622037 622254 . + 0 ID=Physo135231;Parent=Physo135231;rank=1 scaffold_36 . exon 622037 622254 . + . ID=Physo135231.1;Parent=Physo135231;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_36 . CDS 622275 623051 . + 0 ID=Physo135231;Parent=Physo135231;rank=2 scaffold_36 . exon 622275 623051 . + . ID=Physo135231.2;Parent=Physo135231;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_36 . CDS 623399 623528 . + 0 ID=Physo135231;Parent=Physo135231;rank=3 scaffold_36 . exon 623399 623528 . + . ID=Physo135231.3;Parent=Physo135231;constitutive=1;ensembl_phase=2;rank=3 scaffold_36 . CDS 623700 624205 . + 0 ID=Physo135231;Parent=Physo135231;rank=4 scaffold_36 . exon 623700 624205 . + . ID=Physo135231.4;Parent=Physo135231;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_36 . CDS 624259 624439 . + 0 ID=Physo135231;Parent=Physo135231;rank=5 scaffold_36 . exon 624259 624439 . + . ID=Physo135231.5;Parent=Physo135231;constitutive=1;ensembl_phase=2;rank=5 scaffold_36 . CDS 624497 624640 . + 0 ID=Physo135231;Parent=Physo135231;rank=6 scaffold_36 . exon 624497 624640 . + . ID=Physo135231.6;Parent=Physo135231;constitutive=1;rank=6 scaffold_36 . CDS 624673 624771 . + 0 ID=Physo135231;Parent=Physo135231;rank=7 scaffold_36 . exon 624673 624771 . + . ID=Physo135231.7;Parent=Physo135231;constitutive=1;rank=7 ##gff-version 3 ##sequence-region scaffold_35 1 630891 scaffold_35 . biological_region 117 123 0.999 + . logic_name=eponine scaffold_35 . repeat_region 127 232 . ? . description=trf scaffold_35 . repeat_region 136 191 . ? . description=trf scaffold_35 . biological_region 145 150 0.999 + . logic_name=eponine scaffold_35 . repeat_region 170 209 . ? . description=trf scaffold_35 . repeat_region 207 243 . ? . description=trf scaffold_35 . biological_region 2995 2996 0.999 + . logic_name=eponine scaffold_35 . biological_region 3880 3882 0.999 + . logic_name=eponine scaffold_35 . repeat_region 4696 4746 . ? . description=trf scaffold_35 . repeat_region 4696 4748 . ? . description=trf scaffold_35 . repeat_region 4788 4818 . ? . description=trf scaffold_35 . repeat_region 4823 4860 . ? . description=trf scaffold_35 . biological_region 7239 7239 0.999 - . logic_name=eponine scaffold_35 . biological_region 8794 8797 0.999 + . logic_name=eponine scaffold_35 . repeat_region 9220 9228 . ? . description=dust scaffold_35 ensembl protein_coding_gene 1443 5784 . - . ID=Physo134949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350001;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 1443 5784 . - . ID=Physo134949;Parent=Physo134949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 1443 1729 . - 0 ID=Physo134949;Parent=Physo134949;rank=7 scaffold_35 . exon 1443 1729 . - . ID=Physo134949.7;Parent=Physo134949;constitutive=1;ensembl_phase=1;rank=7 scaffold_35 . CDS 1937 3487 . - 0 ID=Physo134949;Parent=Physo134949;rank=6 scaffold_35 . exon 1937 3487 . - . ID=Physo134949.6;Parent=Physo134949;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_35 . CDS 3646 3819 . - 0 ID=Physo134949;Parent=Physo134949;rank=5 scaffold_35 . exon 3646 3819 . - . ID=Physo134949.5;Parent=Physo134949;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 3850 4603 . - 0 ID=Physo134949;Parent=Physo134949;rank=4 scaffold_35 . exon 3850 4603 . - . ID=Physo134949.4;Parent=Physo134949;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_35 . CDS 4714 4735 . - 0 ID=Physo134949;Parent=Physo134949;rank=3 scaffold_35 . exon 4714 4735 . - . ID=Physo134949.3;Parent=Physo134949;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 4951 5390 . - 0 ID=Physo134949;Parent=Physo134949;rank=2 scaffold_35 . exon 4951 5390 . - . ID=Physo134949.2;Parent=Physo134949;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 5509 5784 . - 0 ID=Physo134949;Parent=Physo134949;rank=1 scaffold_35 . exon 5509 5784 . - . ID=Physo134949.1;Parent=Physo134949;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 6958 9153 . - . ID=Physo134950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350002;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 6958 9153 . - . ID=Physo134950;Parent=Physo134950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 6958 7364 . - 0 ID=Physo134950;Parent=Physo134950;rank=3 scaffold_35 . exon 6958 7364 . - . ID=Physo134950.3;Parent=Physo134950;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 7581 7602 . - 0 ID=Physo134950;Parent=Physo134950;rank=2 scaffold_35 . exon 7581 7602 . - . ID=Physo134950.2;Parent=Physo134950;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 7927 9153 . - 0 ID=Physo134950;Parent=Physo134950;rank=1 scaffold_35 . exon 7927 9153 . - . ID=Physo134950.1;Parent=Physo134950;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 9369 12062 . - . ID=Physo134951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350003;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 9369 12062 . - . ID=Physo134951;Parent=Physo134951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 9369 10061 . - 0 ID=Physo134951;Parent=Physo134951;rank=3 scaffold_35 . exon 9369 10061 . - . ID=Physo134951.3;Parent=Physo134951;constitutive=1;rank=3 scaffold_35 . CDS 10150 10328 . - 0 ID=Physo134951;Parent=Physo134951;rank=2 scaffold_35 . CDS 10664 12062 . - 0 ID=Physo134951;Parent=Physo134951;rank=1 scaffold_35 . repeat_region 11520 11615 . + . description=(TCG)n scaffold_35 . exon 10150 10328 . - . ID=Physo134951.2;Parent=Physo134951;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . exon 10664 12062 . - . ID=Physo134951.1;Parent=Physo134951;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 18797 19183 . - . ID=Physo134952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350004;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 18797 19183 . - . ID=Physo134952;Parent=Physo134952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 18797 19183 . - 0 ID=Physo134952;Parent=Physo134952;rank=1 scaffold_35 . exon 18797 19183 . - . ID=Physo134952.1;Parent=Physo134952;constitutive=1;rank=1 scaffold_35 . repeat_region 19800 19808 . ? . description=dust scaffold_35 . biological_region 20962 20965 0.999 + . logic_name=eponine scaffold_35 . repeat_region 22309 22317 . ? . description=dust scaffold_35 . repeat_region 25698 25774 . ? . description=trf scaffold_35 . repeat_region 25698 25775 . ? . description=trf scaffold_35 . repeat_region 27378 27385 . ? . description=dust scaffold_35 . biological_region 28209 28210 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 19996 20625 . + . ID=Physo134953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350005;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 19996 20625 . + . ID=Physo134953;Parent=Physo134953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 19996 20625 . + 0 ID=Physo134953;Parent=Physo134953;rank=1 scaffold_35 . exon 19996 20625 . + . ID=Physo134953.1;Parent=Physo134953;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 34649 39930 . + . ID=Physo134954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350006;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 34649 39930 . + . ID=Physo134954;Parent=Physo134954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 34649 35274 . + 0 ID=Physo134954;Parent=Physo134954;rank=1 scaffold_35 . exon 34649 35274 . + . ID=Physo134954.1;Parent=Physo134954;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 35576 36030 . + 0 ID=Physo134954;Parent=Physo134954;rank=2 scaffold_35 . exon 35576 36030 . + . ID=Physo134954.2;Parent=Physo134954;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 36279 37017 . + 0 ID=Physo134954;Parent=Physo134954;rank=3 scaffold_35 . exon 36279 37017 . + . ID=Physo134954.3;Parent=Physo134954;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . CDS 37217 38637 . + 0 ID=Physo134954;Parent=Physo134954;rank=4 scaffold_35 . exon 37217 38637 . + . ID=Physo134954.4;Parent=Physo134954;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 38669 39390 . + 0 ID=Physo134954;Parent=Physo134954;rank=5 scaffold_35 . exon 38669 39390 . + . ID=Physo134954.5;Parent=Physo134954;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 39502 39930 . + 0 ID=Physo134954;Parent=Physo134954;rank=6 scaffold_35 . repeat_region 39416 39488 . ? . description=trf scaffold_35 . repeat_region 39419 39468 . ? . description=trf scaffold_35 . biological_region 39453 39459 0.999 + . logic_name=eponine scaffold_35 . biological_region 39470 39472 0.999 + . logic_name=eponine scaffold_35 . biological_region 39484 39486 0.999 + . logic_name=eponine scaffold_35 . biological_region 39519 39525 0.999 - . logic_name=eponine scaffold_35 . biological_region 40443 40447 0.999 - . logic_name=eponine scaffold_35 . biological_region 40735 40738 0.999 + . logic_name=eponine scaffold_35 . biological_region 40827 40829 0.999 + . logic_name=eponine scaffold_35 . biological_region 40885 40888 0.999 + . logic_name=eponine scaffold_35 . biological_region 41143 41145 0.999 + . logic_name=eponine scaffold_35 . biological_region 41203 41204 0.999 - . logic_name=eponine scaffold_35 . biological_region 41376 41376 0.999 - . logic_name=eponine scaffold_35 . biological_region 41401 41402 0.999 - . logic_name=eponine scaffold_35 . biological_region 41455 41459 0.999 + . logic_name=eponine scaffold_35 . biological_region 41722 41724 0.999 + . logic_name=eponine scaffold_35 . biological_region 41916 41920 0.999 + . logic_name=eponine scaffold_35 . biological_region 42013 42017 0.999 - . logic_name=eponine scaffold_35 . biological_region 42042 42045 0.999 + . logic_name=eponine scaffold_35 . biological_region 42527 42527 0.999 + . logic_name=eponine scaffold_35 . biological_region 42598 42600 0.999 + . logic_name=eponine scaffold_35 . repeat_region 42815 42859 . ? . description=trf scaffold_35 . repeat_region 43305 43312 . ? . description=dust scaffold_35 . repeat_region 44952 44960 . ? . description=dust scaffold_35 . exon 39502 39930 . + . ID=Physo134954.6;Parent=Physo134954;constitutive=1;rank=6 scaffold_35 ensembl protein_coding_gene 41698 42048 . + . ID=Physo134955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350007;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 41698 42048 . + . ID=Physo134955;Parent=Physo134955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 41698 42048 . + 0 ID=Physo134955;Parent=Physo134955;rank=1 scaffold_35 . exon 41698 42048 . + . ID=Physo134955.1;Parent=Physo134955;constitutive=1;rank=1 scaffold_35 . repeat_region 54091 54476 . - . description=Gypsy-2-I_PI-int scaffold_35 ensembl protein_coding_gene 49676 51425 . - . ID=Physo134956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350008;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 49676 51425 . - . ID=Physo134956;Parent=Physo134956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 49676 49724 . - 0 ID=Physo134956;Parent=Physo134956;rank=3 scaffold_35 . exon 49676 49724 . - . ID=Physo134956.3;Parent=Physo134956;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 49885 50646 . - 0 ID=Physo134956;Parent=Physo134956;rank=2 scaffold_35 . exon 49885 50646 . - . ID=Physo134956.2;Parent=Physo134956;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 50941 51425 . - 0 ID=Physo134956;Parent=Physo134956;rank=1 scaffold_35 . exon 50941 51425 . - . ID=Physo134956.1;Parent=Physo134956;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 53371 54401 . - . ID=Physo134957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350009;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 53371 54401 . - . ID=Physo134957;Parent=Physo134957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 53371 53989 . - 0 ID=Physo134957;Parent=Physo134957;rank=2 scaffold_35 . exon 53371 53989 . - . ID=Physo134957.2;Parent=Physo134957;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 54070 54401 . - 0 ID=Physo134957;Parent=Physo134957;rank=1 scaffold_35 . exon 54070 54401 . - . ID=Physo134957.1;Parent=Physo134957;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 55982 58314 . - . ID=Physo134958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350010;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 55982 58314 . - . ID=Physo134958;Parent=Physo134958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 55982 56007 . - 0 ID=Physo134958;Parent=Physo134958;rank=4 scaffold_35 . exon 55982 56007 . - . ID=Physo134958.4;Parent=Physo134958;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 56031 57891 . - 0 ID=Physo134958;Parent=Physo134958;rank=3 scaffold_35 . exon 56031 57891 . - . ID=Physo134958.3;Parent=Physo134958;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_35 . CDS 57935 57950 . - 0 ID=Physo134958;Parent=Physo134958;rank=2 scaffold_35 . exon 57935 57950 . - . ID=Physo134958.2;Parent=Physo134958;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 58019 58314 . - 0 ID=Physo134958;Parent=Physo134958;rank=1 scaffold_35 . exon 58019 58314 . - . ID=Physo134958.1;Parent=Physo134958;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . biological_region 59979 59981 0.999 - . logic_name=eponine scaffold_35 . repeat_region 62469 62488 . ? . description=trf scaffold_35 . repeat_region 63324 63452 . ? . description=trf scaffold_35 . repeat_region 63952 64097 . ? . description=trf scaffold_35 . biological_region 66295 66296 0.999 - . logic_name=eponine scaffold_35 . biological_region 66788 66792 0.999 + . logic_name=eponine scaffold_35 . biological_region 66845 66846 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 64743 67143 . - . ID=Physo134959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350011;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 64743 67143 . - . ID=Physo134959;Parent=Physo134959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 64743 65690 . - 0 ID=Physo134959;Parent=Physo134959;rank=5 scaffold_35 . exon 64743 65690 . - . ID=Physo134959.5;Parent=Physo134959;constitutive=1;rank=5 scaffold_35 . CDS 65771 65817 . - 0 ID=Physo134959;Parent=Physo134959;rank=4 scaffold_35 . exon 65771 65817 . - . ID=Physo134959.4;Parent=Physo134959;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 65936 66118 . - 0 ID=Physo134959;Parent=Physo134959;rank=3 scaffold_35 . exon 65936 66118 . - . ID=Physo134959.3;Parent=Physo134959;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 66186 66580 . - 0 ID=Physo134959;Parent=Physo134959;rank=2 scaffold_35 . exon 66186 66580 . - . ID=Physo134959.2;Parent=Physo134959;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 66986 67143 . - 0 ID=Physo134959;Parent=Physo134959;rank=1 scaffold_35 . exon 66986 67143 . - . ID=Physo134959.1;Parent=Physo134959;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . repeat_region 69117 69126 . ? . description=dust scaffold_35 . repeat_region 70274 70281 . ? . description=dust scaffold_35 . repeat_region 71160 71184 . ? . description=dust scaffold_35 . repeat_region 74555 76929 . + . description=GypsyPi-1c_I-int scaffold_35 ensembl protein_coding_gene 73889 77128 . + . ID=Physo134960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350012;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 73889 77128 . + . ID=Physo134960;Parent=Physo134960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 73889 73924 . + 0 ID=Physo134960;Parent=Physo134960;rank=1 scaffold_35 . exon 73889 73924 . + . ID=Physo134960.1;Parent=Physo134960;constitutive=1;rank=1 scaffold_35 . CDS 73980 75470 . + 0 ID=Physo134960;Parent=Physo134960;rank=2 scaffold_35 . exon 73980 75470 . + . ID=Physo134960.2;Parent=Physo134960;constitutive=1;rank=2 scaffold_35 . CDS 75506 75711 . + 0 ID=Physo134960;Parent=Physo134960;rank=3 scaffold_35 . exon 75506 75711 . + . ID=Physo134960.3;Parent=Physo134960;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 75751 75998 . + 0 ID=Physo134960;Parent=Physo134960;rank=4 scaffold_35 . exon 75751 75998 . + . ID=Physo134960.4;Parent=Physo134960;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 76153 77071 . + 0 ID=Physo134960;Parent=Physo134960;rank=5 scaffold_35 . exon 76153 77071 . + . ID=Physo134960.5;Parent=Physo134960;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_35 . CDS 77110 77128 . + 0 ID=Physo134960;Parent=Physo134960;rank=6 scaffold_35 . exon 77110 77128 . + . ID=Physo134960.6;Parent=Physo134960;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 ensembl protein_coding_gene 77212 77861 . - . ID=Physo134961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350013;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 77212 77861 . - . ID=Physo134961;Parent=Physo134961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 77212 77244 . - 0 ID=Physo134961;Parent=Physo134961;rank=2 scaffold_35 . exon 77212 77244 . - . ID=Physo134961.2;Parent=Physo134961;constitutive=1;rank=2 scaffold_35 . CDS 77361 77861 . - 0 ID=Physo134961;Parent=Physo134961;rank=1 scaffold_35 . exon 77361 77861 . - . ID=Physo134961.1;Parent=Physo134961;constitutive=1;rank=1 scaffold_35 . repeat_region 82026 82108 . ? . description=trf scaffold_35 . repeat_region 82039 82108 . ? . description=trf scaffold_35 . biological_region 82098 82101 0.999 + . logic_name=eponine scaffold_35 . biological_region 82194 82200 0.999 - . logic_name=eponine scaffold_35 . repeat_region 82251 82297 . ? . description=trf scaffold_35 . biological_region 82279 82284 0.999 + . logic_name=eponine scaffold_35 . biological_region 82297 82302 0.999 - . logic_name=eponine scaffold_35 . biological_region 84306 84308 0.999 + . logic_name=eponine scaffold_35 . biological_region 86350 86354 0.999 - . logic_name=eponine scaffold_35 . biological_region 87052 87054 0.999 - . logic_name=eponine scaffold_35 . biological_region 87132 87135 0.999 + . logic_name=eponine scaffold_35 . biological_region 87409 87411 0.999 + . logic_name=eponine scaffold_35 . biological_region 88187 88193 0.999 + . logic_name=eponine scaffold_35 . biological_region 88262 88263 0.999 + . logic_name=eponine scaffold_35 . biological_region 88289 88289 0.999 - . logic_name=eponine scaffold_35 . biological_region 88305 88309 0.999 - . logic_name=eponine scaffold_35 . biological_region 88365 88365 0.999 - . logic_name=eponine scaffold_35 . biological_region 88466 88469 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 85134 86410 . - . ID=Physo108833;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350001;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 85134 86410 . - . ID=Physo108833;Parent=Physo108833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 85134 85280 . - 0 ID=Physo108833;Parent=Physo108833;rank=4 scaffold_35 . exon 85134 85280 . - . ID=Physo108833.4;Parent=Physo108833;constitutive=1;rank=4 scaffold_35 . CDS 85302 85918 . - 0 ID=Physo108833;Parent=Physo108833;rank=3 scaffold_35 . exon 85302 85918 . - . ID=Physo108833.3;Parent=Physo108833;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 86013 86122 . - 0 ID=Physo108833;Parent=Physo108833;rank=2 scaffold_35 . exon 86013 86122 . - . ID=Physo108833.2;Parent=Physo108833;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 86215 86405 . - 0 ID=Physo108833;Parent=Physo108833;rank=1 scaffold_35 . exon 86215 86410 . - . ID=Physo108833.1;Parent=Physo108833;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_35 ensembl protein_coding_gene 88718 91093 . - . ID=Physo108834;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350002;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 88718 91093 . - . ID=Physo108834;Parent=Physo108834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 88718 90761 . - . ID=Physo108834.2;Parent=Physo108834;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_35 . CDS 89043 90761 . - 0 ID=Physo108834;Parent=Physo108834;rank=2 scaffold_35 . CDS 91046 91093 . - 0 ID=Physo108834;Parent=Physo108834;rank=1 scaffold_35 ensembl protein_coding_gene 79701 80398 . - . ID=Physo134962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350014;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 79701 80398 . - . ID=Physo134962;Parent=Physo134962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 79701 80116 . - 0 ID=Physo134962;Parent=Physo134962;rank=2 scaffold_35 . exon 79701 80116 . - . ID=Physo134962.2;Parent=Physo134962;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 80239 80398 . - 0 ID=Physo134962;Parent=Physo134962;rank=1 scaffold_35 . exon 80239 80398 . - . ID=Physo134962.1;Parent=Physo134962;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 86905 88341 . - . ID=Physo134964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350016;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 86905 88341 . - . ID=Physo134964;Parent=Physo134964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 86905 87875 . - . ID=Physo134964.3;Parent=Physo134964;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_35 . CDS 87118 87875 . - 0 ID=Physo134964;Parent=Physo134964;rank=3 scaffold_35 . CDS 87960 88069 . - 0 ID=Physo134964;Parent=Physo134964;rank=2 scaffold_35 . exon 87960 88069 . - . ID=Physo134964.2;Parent=Physo134964;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 88153 88334 . - 0 ID=Physo134964;Parent=Physo134964;rank=1 scaffold_35 . exon 88153 88341 . - . ID=Physo134964.1;Parent=Physo134964;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_35 . repeat_region 89104 89182 . ? . description=dust scaffold_35 . repeat_region 90631 90702 . ? . description=dust scaffold_35 . exon 91046 91093 . - . ID=Physo108834.1;Parent=Physo108834;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 93132 94307 . - . ID=Physo108835;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350003;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 93132 94307 . - . ID=Physo108835;Parent=Physo108835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 93132 94307 . - 0 ID=Physo108835;Parent=Physo108835;rank=1 scaffold_35 . exon 93132 94307 . - . ID=Physo108835.1;Parent=Physo108835;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 94569 95760 . + . ID=Physo134968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350020;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 94569 95760 . + . ID=Physo134968;Parent=Physo134968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 94569 94747 . + . ID=Physo134968.1;Parent=Physo134968;constitutive=1;ensembl_phase=-1;rank=1 scaffold_35 . CDS 94577 94747 . + 0 ID=Physo134968;Parent=Physo134968;rank=1 scaffold_35 . CDS 94843 94898 . + 0 ID=Physo134968;Parent=Physo134968;rank=2 scaffold_35 . exon 94843 94898 . + . ID=Physo134968.2;Parent=Physo134968;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 94976 95051 . + 0 ID=Physo134968;Parent=Physo134968;rank=3 scaffold_35 . exon 94976 95051 . + . ID=Physo134968.3;Parent=Physo134968;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 95140 95578 . + 0 ID=Physo134968;Parent=Physo134968;rank=4 scaffold_35 . exon 95140 95578 . + . ID=Physo134968.4;Parent=Physo134968;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_35 . CDS 95600 95760 . + 0 ID=Physo134968;Parent=Physo134968;rank=5 scaffold_35 . exon 95600 95760 . + . ID=Physo134968.5;Parent=Physo134968;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 ensembl protein_coding_gene 97649 99204 . - . ID=Physo134969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350021;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 97649 99204 . - . ID=Physo134969;Parent=Physo134969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 97649 98620 . - 0 ID=Physo134969;Parent=Physo134969;rank=5 scaffold_35 . exon 97649 98620 . - . ID=Physo134969.5;Parent=Physo134969;constitutive=1;rank=5 scaffold_35 . CDS 98693 98797 . - 0 ID=Physo134969;Parent=Physo134969;rank=4 scaffold_35 . CDS 98873 98925 . - 0 ID=Physo134969;Parent=Physo134969;rank=3 scaffold_35 . CDS 99019 99034 . - 0 ID=Physo134969;Parent=Physo134969;rank=2 scaffold_35 . CDS 99114 99203 . - 0 ID=Physo134969;Parent=Physo134969;rank=1 scaffold_35 ensembl protein_coding_gene 91689 93037 . + . ID=Physo157111;biotype=protein_coding;external_name=C_scaffold_35000003;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 91689 93037 . + . ID=Physo157111;Parent=Physo157111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 91689 91891 . + 0 ID=Physo157111;Parent=Physo157111;rank=1 scaffold_35 . exon 91689 91891 . + . ID=Physo157111.1;Parent=Physo157111;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 91925 92249 . + 0 ID=Physo157111;Parent=Physo157111;rank=2 scaffold_35 . exon 91925 92249 . + . ID=Physo157111.2;Parent=Physo157111;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 92334 92571 . + 0 ID=Physo157111;Parent=Physo157111;rank=3 scaffold_35 . exon 92334 92571 . + . ID=Physo157111.3;Parent=Physo157111;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_35 . CDS 92647 92719 . + 0 ID=Physo157111;Parent=Physo157111;rank=4 scaffold_35 . exon 92647 92719 . + . ID=Physo157111.4;Parent=Physo157111;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_35 . CDS 92785 93037 . + 0 ID=Physo157111;Parent=Physo157111;rank=5 scaffold_35 . exon 92785 93037 . + . ID=Physo157111.5;Parent=Physo157111;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . biological_region 99397 99399 0.999 + . logic_name=eponine scaffold_35 . biological_region 99419 99421 0.999 + . logic_name=eponine scaffold_35 . biological_region 100799 100801 0.999 - . logic_name=eponine scaffold_35 . repeat_region 103092 103288 . + . description=(CAG)n scaffold_35 . repeat_region 103099 103141 . ? . description=trf scaffold_35 . repeat_region 103255 103283 . ? . description=trf scaffold_35 . repeat_region 103255 103286 . ? . description=trf scaffold_35 . biological_region 107325 107326 0.999 - . logic_name=eponine scaffold_35 . exon 98693 98797 . - . ID=Physo134969.4;Parent=Physo134969;constitutive=1;rank=4 scaffold_35 . exon 98873 98925 . - . ID=Physo134969.3;Parent=Physo134969;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . exon 99019 99034 . - . ID=Physo134969.2;Parent=Physo134969;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . exon 99114 99204 . - . ID=Physo134969.1;Parent=Physo134969;constitutive=1;ensembl_phase=-1;rank=1 scaffold_35 ensembl protein_coding_gene 105725 106688 . - . ID=Physo134972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350024;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 105725 106688 . - . ID=Physo134972;Parent=Physo134972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 105725 106209 . - 0 ID=Physo134972;Parent=Physo134972;rank=3 scaffold_35 . exon 105725 106209 . - . ID=Physo134972.3;Parent=Physo134972;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 106282 106420 . - 0 ID=Physo134972;Parent=Physo134972;rank=2 scaffold_35 . exon 106282 106420 . - . ID=Physo134972.2;Parent=Physo134972;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 106485 106688 . - 0 ID=Physo134972;Parent=Physo134972;rank=1 scaffold_35 . exon 106485 106688 . - . ID=Physo134972.1;Parent=Physo134972;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 99313 103578 . + . ID=Physo157113;biotype=protein_coding;external_name=C_scaffold_35000005;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 99313 103578 . + . ID=Physo157113;Parent=Physo157113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 99313 99491 . + 0 ID=Physo157113;Parent=Physo157113;rank=1 scaffold_35 . exon 99313 99491 . + . ID=Physo157113.1;Parent=Physo157113;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 99606 100562 . + 0 ID=Physo157113;Parent=Physo157113;rank=2 scaffold_35 . exon 99606 100562 . + . ID=Physo157113.2;Parent=Physo157113;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 100645 100840 . + 0 ID=Physo157113;Parent=Physo157113;rank=3 scaffold_35 . exon 100645 100840 . + . ID=Physo157113.3;Parent=Physo157113;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 101268 101357 . + 0 ID=Physo157113;Parent=Physo157113;rank=4 scaffold_35 . exon 101268 101357 . + . ID=Physo157113.4;Parent=Physo157113;constitutive=1;rank=4 scaffold_35 . CDS 101513 101665 . + 0 ID=Physo157113;Parent=Physo157113;rank=5 scaffold_35 . exon 101513 101665 . + . ID=Physo157113.5;Parent=Physo157113;constitutive=1;rank=5 scaffold_35 . CDS 101749 102581 . + 0 ID=Physo157113;Parent=Physo157113;rank=6 scaffold_35 . exon 101749 102581 . + . ID=Physo157113.6;Parent=Physo157113;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_35 . CDS 102630 102726 . + 0 ID=Physo157113;Parent=Physo157113;rank=7 scaffold_35 . exon 102630 102726 . + . ID=Physo157113.7;Parent=Physo157113;constitutive=1;ensembl_phase=2;rank=7 scaffold_35 . CDS 102847 103030 . + 0 ID=Physo157113;Parent=Physo157113;rank=8 scaffold_35 . exon 102847 103030 . + . ID=Physo157113.8;Parent=Physo157113;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_35 . CDS 103085 103578 . + 0 ID=Physo157113;Parent=Physo157113;rank=9 scaffold_35 . exon 103085 103578 . + . ID=Physo157113.9;Parent=Physo157113;constitutive=1;ensembl_phase=1;rank=9 scaffold_35 ensembl protein_coding_gene 108390 112472 . + . ID=Physo157114;biotype=protein_coding;external_name=C_scaffold_35000006;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 108390 112472 . + . ID=Physo157114;Parent=Physo157114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 108390 108539 . + 0 ID=Physo157114;Parent=Physo157114;rank=1 scaffold_35 . exon 108390 108539 . + . ID=Physo157114.1;Parent=Physo157114;constitutive=1;rank=1 scaffold_35 . CDS 108908 109003 . + 0 ID=Physo157114;Parent=Physo157114;rank=2 scaffold_35 . CDS 109085 109170 . + 0 ID=Physo157114;Parent=Physo157114;rank=3 scaffold_35 . CDS 109260 109329 . + 0 ID=Physo157114;Parent=Physo157114;rank=4 scaffold_35 . CDS 110256 111330 . + 0 ID=Physo157114;Parent=Physo157114;rank=5 scaffold_35 . CDS 111352 111576 . + 0 ID=Physo157114;Parent=Physo157114;rank=6 scaffold_35 . CDS 112063 112472 . + 0 ID=Physo157114;Parent=Physo157114;rank=7 scaffold_35 . repeat_region 108890 108898 . ? . description=dust scaffold_35 ensembl protein_coding_gene 115089 115949 . + . ID=Physo116717;biotype=protein_coding;external_name=estExt_Genewise1.C_350097;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 115089 115949 . + . ID=Physo116717;Parent=Physo116717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 115089 115949 . + . ID=Physo116717.1;Parent=Physo116717;constitutive=1;ensembl_phase=-1;rank=1 scaffold_35 . CDS 115101 115949 . + 0 ID=Physo116717;Parent=Physo116717;rank=1 scaffold_35 ensembl protein_coding_gene 114768 115072 . + . ID=Physo134976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350028;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 114768 115072 . + . ID=Physo134976;Parent=Physo134976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 114768 115070 . + 0 ID=Physo134976;Parent=Physo134976;rank=1 scaffold_35 . exon 114768 115072 . + . ID=Physo134976.1;Parent=Physo134976;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_35 . exon 108908 109003 . + . ID=Physo157114.2;Parent=Physo157114;constitutive=1;rank=2 scaffold_35 . exon 109085 109170 . + . ID=Physo157114.3;Parent=Physo157114;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . exon 109260 109329 . + . ID=Physo157114.4;Parent=Physo157114;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . exon 110256 111330 . + . ID=Physo157114.5;Parent=Physo157114;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_35 . exon 111352 111576 . + . ID=Physo157114.6;Parent=Physo157114;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_35 . exon 112063 112472 . + . ID=Physo157114.7;Parent=Physo157114;constitutive=1;ensembl_phase=1;rank=7 scaffold_35 ensembl protein_coding_gene 112824 114061 . - . ID=Physo157115;biotype=protein_coding;external_name=C_scaffold_35000007;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 112824 114061 . - . ID=Physo157115;Parent=Physo157115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 112824 113701 . - 0 ID=Physo157115;Parent=Physo157115;rank=2 scaffold_35 . exon 112824 113701 . - . ID=Physo157115.2;Parent=Physo157115;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 113782 114061 . - 0 ID=Physo157115;Parent=Physo157115;rank=1 scaffold_35 . exon 113782 114061 . - . ID=Physo157115.1;Parent=Physo157115;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . biological_region 118473 118477 0.999 + . logic_name=eponine scaffold_35 . repeat_region 126949 129328 . + . description=GypsyPi-1c_I-int scaffold_35 . biological_region 127169 127170 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 126836 129579 . + . ID=Physo134978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350030;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 126836 129579 . + . ID=Physo134978;Parent=Physo134978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 126836 128106 . + 0 ID=Physo134978;Parent=Physo134978;rank=1 scaffold_35 . exon 126836 128106 . + . ID=Physo134978.1;Parent=Physo134978;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 128280 129579 . + 0 ID=Physo134978;Parent=Physo134978;rank=2 scaffold_35 . repeat_region 132462 132496 . ? . description=trf scaffold_35 . repeat_region 132471 132540 . ? . description=trf scaffold_35 . repeat_region 133521 133566 . ? . description=trf scaffold_35 . exon 128280 129579 . + . ID=Physo134978.2;Parent=Physo134978;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . repeat_region 138382 138392 . ? . description=dust scaffold_35 . repeat_region 146814 146824 . ? . description=dust scaffold_35 ensembl protein_coding_gene 138890 139904 . + . ID=Physo134979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350031;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 138890 139904 . + . ID=Physo134979;Parent=Physo134979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 138890 139070 . + 0 ID=Physo134979;Parent=Physo134979;rank=1 scaffold_35 . exon 138890 139070 . + . ID=Physo134979.1;Parent=Physo134979;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 139402 139575 . + 0 ID=Physo134979;Parent=Physo134979;rank=2 scaffold_35 . exon 139402 139575 . + . ID=Physo134979.2;Parent=Physo134979;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 139684 139904 . + 0 ID=Physo134979;Parent=Physo134979;rank=3 scaffold_35 . exon 139684 139904 . + . ID=Physo134979.3;Parent=Physo134979;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . biological_region 153821 153825 0.999 + . logic_name=eponine scaffold_35 . biological_region 155911 155913 0.999 + . logic_name=eponine scaffold_35 . biological_region 155965 155968 0.999 - . logic_name=eponine scaffold_35 . biological_region 156006 156009 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 151993 152250 . + . ID=Physo116724;biotype=protein_coding;external_name=estExt_Genewise1.C_350104;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 151993 152250 . + . ID=Physo116724;Parent=Physo116724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 151993 152250 . + . ID=Physo116724.1;Parent=Physo116724;constitutive=1;ensembl_phase=-1;rank=1 scaffold_35 . CDS 152029 152250 . + 0 ID=Physo116724;Parent=Physo116724;rank=1 scaffold_35 ensembl protein_coding_gene 149180 150168 . + . ID=Physo134980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350032;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 149180 150168 . + . ID=Physo134980;Parent=Physo134980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 149180 149339 . + 0 ID=Physo134980;Parent=Physo134980;rank=1 scaffold_35 . exon 149180 149339 . + . ID=Physo134980.1;Parent=Physo134980;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 149476 149672 . + 0 ID=Physo134980;Parent=Physo134980;rank=2 scaffold_35 . exon 149476 149672 . + . ID=Physo134980.2;Parent=Physo134980;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 149745 150071 . + 0 ID=Physo134980;Parent=Physo134980;rank=3 scaffold_35 . exon 149745 150071 . + . ID=Physo134980.3;Parent=Physo134980;constitutive=1;rank=3 scaffold_35 . CDS 150151 150168 . + 0 ID=Physo134980;Parent=Physo134980;rank=4 scaffold_35 . exon 150151 150168 . + . ID=Physo134980.4;Parent=Physo134980;constitutive=1;rank=4 scaffold_35 . repeat_region 159330 159352 . ? . description=dust scaffold_35 . repeat_region 159333 159352 . ? . description=trf scaffold_35 . repeat_region 163577 163584 . ? . description=dust scaffold_35 ensembl protein_coding_gene 165527 167617 . + . ID=Physo108837;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350005;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 165527 167617 . + . ID=Physo108837;Parent=Physo108837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 165527 165819 . + 0 ID=Physo108837;Parent=Physo108837;rank=1 scaffold_35 . exon 165527 165819 . + . ID=Physo108837.1;Parent=Physo108837;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 165891 165941 . + 0 ID=Physo108837;Parent=Physo108837;rank=2 scaffold_35 . exon 165891 165941 . + . ID=Physo108837.2;Parent=Physo108837;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 166071 166186 . + 0 ID=Physo108837;Parent=Physo108837;rank=3 scaffold_35 . exon 166071 166186 . + . ID=Physo108837.3;Parent=Physo108837;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 166397 166671 . + 0 ID=Physo108837;Parent=Physo108837;rank=4 scaffold_35 . exon 166397 166671 . + . ID=Physo108837.4;Parent=Physo108837;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 166741 166823 . + 0 ID=Physo108837;Parent=Physo108837;rank=5 scaffold_35 . exon 166741 166823 . + . ID=Physo108837.5;Parent=Physo108837;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 166897 167561 . + 0 ID=Physo108837;Parent=Physo108837;rank=6 scaffold_35 . exon 166897 167561 . + . ID=Physo108837.6;Parent=Physo108837;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_35 . CDS 167601 167617 . + 0 ID=Physo108837;Parent=Physo108837;rank=7 scaffold_35 ensembl protein_coding_gene 161563 163062 . - . ID=Physo134981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350033;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 161563 163062 . - . ID=Physo134981;Parent=Physo134981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 161563 161862 . - 0 ID=Physo134981;Parent=Physo134981;rank=4 scaffold_35 . exon 161563 161862 . - . ID=Physo134981.4;Parent=Physo134981;constitutive=1;rank=4 scaffold_35 . CDS 161935 162124 . - 0 ID=Physo134981;Parent=Physo134981;rank=3 scaffold_35 . exon 161935 162124 . - . ID=Physo134981.3;Parent=Physo134981;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 162204 162398 . - 0 ID=Physo134981;Parent=Physo134981;rank=2 scaffold_35 . exon 162204 162398 . - . ID=Physo134981.2;Parent=Physo134981;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 162470 163062 . - 0 ID=Physo134981;Parent=Physo134981;rank=1 scaffold_35 . exon 162470 163062 . - . ID=Physo134981.1;Parent=Physo134981;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 163740 164615 . + . ID=Physo134982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350034;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 163740 164615 . + . ID=Physo134982;Parent=Physo134982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 163740 164588 . + 0 ID=Physo134982;Parent=Physo134982;rank=1 scaffold_35 . exon 163740 164615 . + . ID=Physo134982.1;Parent=Physo134982;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_35 . biological_region 170406 170407 0.999 + . logic_name=eponine scaffold_35 . biological_region 171831 171831 0.999 - . logic_name=eponine scaffold_35 . repeat_region 173512 173564 . - . description=Sola3-2_PS scaffold_35 . repeat_region 173795 174286 . - . description=Sola3-2_PS scaffold_35 . biological_region 173888 173892 0.999 + . logic_name=eponine scaffold_35 . biological_region 174188 174192 0.999 + . logic_name=eponine scaffold_35 . repeat_region 174346 174385 . + . description=(CTG)n scaffold_35 . exon 167601 167617 . + . ID=Physo108837.7;Parent=Physo108837;constitutive=1;ensembl_phase=1;rank=7 scaffold_35 ensembl protein_coding_gene 167685 169143 . - . ID=Physo108838;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350006;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 167685 169143 . - . ID=Physo108838;Parent=Physo108838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 167685 169133 . - 0 ID=Physo108838;Parent=Physo108838;rank=1 scaffold_35 . exon 167685 169143 . - . ID=Physo108838.1;Parent=Physo108838;constitutive=1;ensembl_phase=-1;rank=1 scaffold_35 ensembl protein_coding_gene 169353 171483 . + . ID=Physo134985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350037;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 169353 171483 . + . ID=Physo134985;Parent=Physo134985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 169353 170447 . + . ID=Physo134985.1;Parent=Physo134985;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_35 . CDS 169436 170447 . + 0 ID=Physo134985;Parent=Physo134985;rank=1 scaffold_35 . CDS 170601 170861 . + 0 ID=Physo134985;Parent=Physo134985;rank=2 scaffold_35 . exon 170601 170861 . + . ID=Physo134985.2;Parent=Physo134985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 170888 171483 . + 0 ID=Physo134985;Parent=Physo134985;rank=3 scaffold_35 . exon 170888 171483 . + . ID=Physo134985.3;Parent=Physo134985;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 ensembl protein_coding_gene 173860 174512 . - . ID=Physo134986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350038;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 173860 174512 . - . ID=Physo134986;Parent=Physo134986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 173860 174382 . - 0 ID=Physo134986;Parent=Physo134986;rank=2 scaffold_35 . exon 173860 174382 . - . ID=Physo134986.2;Parent=Physo134986;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 174442 174512 . - 0 ID=Physo134986;Parent=Physo134986;rank=1 scaffold_35 . exon 174442 174512 . - . ID=Physo134986.1;Parent=Physo134986;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . repeat_region 178789 178797 . ? . description=dust scaffold_35 . repeat_region 179425 179448 . ? . description=dust scaffold_35 . repeat_region 180777 180819 . ? . description=trf scaffold_35 . repeat_region 181310 181317 . ? . description=dust scaffold_35 ensembl protein_coding_gene 185775 187488 . - . ID=Physo108839;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350007;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 185775 187488 . - . ID=Physo108839;Parent=Physo108839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 185775 185901 . - 0 ID=Physo108839;Parent=Physo108839;rank=7 scaffold_35 . exon 185775 185901 . - . ID=Physo108839.9;Parent=Physo108839;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 185979 186083 . - 0 ID=Physo108839;Parent=Physo108839;rank=6 scaffold_35 . exon 185979 186083 . - . ID=Physo108839.8;Parent=Physo108839;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_35 . CDS 186147 186289 . - 0 ID=Physo108839;Parent=Physo108839;rank=5 scaffold_35 . exon 186147 186289 . - . ID=Physo108839.7;Parent=Physo108839;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_35 . CDS 186364 186548 . - 0 ID=Physo108839;Parent=Physo108839;rank=4 scaffold_35 . exon 186364 186548 . - . ID=Physo108839.6;Parent=Physo108839;constitutive=1;ensembl_phase=1;rank=6 scaffold_35 . CDS 186622 186846 . - 0 ID=Physo108839;Parent=Physo108839;rank=3 scaffold_35 . exon 186622 186846 . - . ID=Physo108839.5;Parent=Physo108839;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 186923 187083 . - 0 ID=Physo108839;Parent=Physo108839;rank=2 scaffold_35 . exon 186923 187083 . - . ID=Physo108839.4;Parent=Physo108839;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 187154 187167 . - 0 ID=Physo108839;Parent=Physo108839;rank=1 scaffold_35 . exon 187154 187222 . - . ID=Physo108839.3;Parent=Physo108839;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=3 scaffold_35 . exon 187294 187321 . - . ID=Physo108839.2;Parent=Physo108839;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_35 ensembl protein_coding_gene 178882 179778 . - . ID=Physo134987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350039;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 178882 179778 . - . ID=Physo134987;Parent=Physo134987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 178882 179298 . - 0 ID=Physo134987;Parent=Physo134987;rank=3 scaffold_35 . exon 178882 179298 . - . ID=Physo134987.3;Parent=Physo134987;constitutive=1;rank=3 scaffold_35 . CDS 179467 179614 . - 0 ID=Physo134987;Parent=Physo134987;rank=2 scaffold_35 . exon 179467 179614 . - . ID=Physo134987.2;Parent=Physo134987;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 179669 179778 . - 0 ID=Physo134987;Parent=Physo134987;rank=1 scaffold_35 . exon 179669 179778 . - . ID=Physo134987.1;Parent=Physo134987;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 181927 185645 . + . ID=Physo157118;biotype=protein_coding;external_name=C_scaffold_35000010;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 181927 185645 . + . ID=Physo157118;Parent=Physo157118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 181927 183417 . + 0 ID=Physo157118;Parent=Physo157118;rank=1 scaffold_35 . exon 181927 183417 . + . ID=Physo157118.1;Parent=Physo157118;constitutive=1;rank=1 scaffold_35 . CDS 183508 183739 . + 0 ID=Physo157118;Parent=Physo157118;rank=2 scaffold_35 . exon 183508 183739 . + . ID=Physo157118.2;Parent=Physo157118;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 183797 184244 . + 0 ID=Physo157118;Parent=Physo157118;rank=3 scaffold_35 . exon 183797 184244 . + . ID=Physo157118.3;Parent=Physo157118;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . CDS 184477 184582 . + 0 ID=Physo157118;Parent=Physo157118;rank=4 scaffold_35 . exon 184477 184582 . + . ID=Physo157118.4;Parent=Physo157118;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 184654 184655 . + 0 ID=Physo157118;Parent=Physo157118;rank=5 scaffold_35 . exon 184654 184655 . + . ID=Physo157118.5;Parent=Physo157118;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 184746 184826 . + 0 ID=Physo157118;Parent=Physo157118;rank=6 scaffold_35 . exon 184746 184826 . + . ID=Physo157118.6;Parent=Physo157118;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_35 . CDS 184976 185056 . + 0 ID=Physo157118;Parent=Physo157118;rank=7 scaffold_35 . exon 184976 185056 . + . ID=Physo157118.7;Parent=Physo157118;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_35 . CDS 185105 185645 . + 0 ID=Physo157118;Parent=Physo157118;rank=8 scaffold_35 . exon 185105 185645 . + . ID=Physo157118.8;Parent=Physo157118;constitutive=1;ensembl_phase=2;rank=8 scaffold_35 . exon 187467 187488 . - . ID=Physo108839.1;Parent=Physo108839;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_35 ensembl protein_coding_gene 189337 192969 . + . ID=Physo157121;biotype=protein_coding;external_name=C_scaffold_35000013;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 189337 192969 . + . ID=Physo157121;Parent=Physo157121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 189337 189565 . + 0 ID=Physo157121;Parent=Physo157121;rank=1 scaffold_35 . exon 189337 189565 . + . ID=Physo157121.1;Parent=Physo157121;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 189644 189858 . + 0 ID=Physo157121;Parent=Physo157121;rank=2 scaffold_35 . exon 189644 189858 . + . ID=Physo157121.2;Parent=Physo157121;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 189952 190335 . + 0 ID=Physo157121;Parent=Physo157121;rank=3 scaffold_35 . exon 189952 190335 . + . ID=Physo157121.3;Parent=Physo157121;constitutive=1;rank=3 scaffold_35 . CDS 190407 190540 . + 0 ID=Physo157121;Parent=Physo157121;rank=4 scaffold_35 . exon 190407 190540 . + . ID=Physo157121.4;Parent=Physo157121;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 190629 190712 . + 0 ID=Physo157121;Parent=Physo157121;rank=5 scaffold_35 . exon 190629 190712 . + . ID=Physo157121.5;Parent=Physo157121;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_35 . CDS 190741 190848 . + 0 ID=Physo157121;Parent=Physo157121;rank=6 scaffold_35 . exon 190741 190848 . + . ID=Physo157121.6;Parent=Physo157121;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_35 . CDS 191136 191312 . + 0 ID=Physo157121;Parent=Physo157121;rank=7 scaffold_35 . exon 191136 191312 . + . ID=Physo157121.7;Parent=Physo157121;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_35 . CDS 191358 191674 . + 0 ID=Physo157121;Parent=Physo157121;rank=8 scaffold_35 . exon 191358 191674 . + . ID=Physo157121.8;Parent=Physo157121;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_35 . CDS 191705 192134 . + 0 ID=Physo157121;Parent=Physo157121;rank=9 scaffold_35 . exon 191705 192134 . + . ID=Physo157121.9;Parent=Physo157121;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_35 . CDS 192189 192545 . + 0 ID=Physo157121;Parent=Physo157121;rank=10 scaffold_35 . exon 192189 192545 . + . ID=Physo157121.10;Parent=Physo157121;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_35 . CDS 192613 192691 . + 0 ID=Physo157121;Parent=Physo157121;rank=11 scaffold_35 . exon 192613 192691 . + . ID=Physo157121.11;Parent=Physo157121;constitutive=1;ensembl_phase=2;rank=11 scaffold_35 . CDS 192922 192969 . + 0 ID=Physo157121;Parent=Physo157121;rank=12 scaffold_35 . exon 192922 192969 . + . ID=Physo157121.12;Parent=Physo157121;constitutive=1;rank=12 scaffold_35 . repeat_region 202262 202286 . ? . description=dust scaffold_35 . repeat_region 204248 204255 . ? . description=dust scaffold_35 . repeat_region 205578 205662 . ? . description=trf scaffold_35 ensembl protein_coding_gene 201992 203121 . + . ID=Physo134992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350044;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 201992 203121 . + . ID=Physo134992;Parent=Physo134992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 201992 202008 . + 0 ID=Physo134992;Parent=Physo134992;rank=1 scaffold_35 . exon 201992 202008 . + . ID=Physo134992.1;Parent=Physo134992;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 202254 203121 . + 0 ID=Physo134992;Parent=Physo134992;rank=2 scaffold_35 . exon 202254 203121 . + . ID=Physo134992.2;Parent=Physo134992;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 ensembl protein_coding_gene 206315 208921 . + . ID=Physo134993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350045;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 206315 208921 . + . ID=Physo134993;Parent=Physo134993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 206315 208921 . + 0 ID=Physo134993;Parent=Physo134993;rank=1 scaffold_35 . exon 206315 208921 . + . ID=Physo134993.1;Parent=Physo134993;constitutive=1;rank=1 scaffold_35 . biological_region 208552 208555 0.999 - . logic_name=eponine scaffold_35 . biological_region 210984 210988 0.999 - . logic_name=eponine scaffold_35 . biological_region 211109 211112 0.999 + . logic_name=eponine scaffold_35 . biological_region 211568 211568 0.999 - . logic_name=eponine scaffold_35 . biological_region 214485 214486 0.999 - . logic_name=eponine scaffold_35 . biological_region 214891 214893 0.999 - . logic_name=eponine scaffold_35 . biological_region 214927 214935 0.999 - . logic_name=eponine scaffold_35 . biological_region 214985 214990 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 211094 211738 . + . ID=Physo134995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350047;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 211094 211738 . + . ID=Physo134995;Parent=Physo134995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 211094 211206 . + 0 ID=Physo134995;Parent=Physo134995;rank=1 scaffold_35 . exon 211094 211206 . + . ID=Physo134995.1;Parent=Physo134995;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 211279 211352 . + 0 ID=Physo134995;Parent=Physo134995;rank=2 scaffold_35 . exon 211279 211352 . + . ID=Physo134995.2;Parent=Physo134995;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 211422 211531 . + 0 ID=Physo134995;Parent=Physo134995;rank=3 scaffold_35 . exon 211422 211531 . + . ID=Physo134995.3;Parent=Physo134995;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 211604 211738 . + 0 ID=Physo134995;Parent=Physo134995;rank=4 scaffold_35 . exon 211604 211738 . + . ID=Physo134995.4;Parent=Physo134995;constitutive=1;rank=4 scaffold_35 ensembl protein_coding_gene 212123 213649 . - . ID=Physo134996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350048;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 212123 213649 . - . ID=Physo134996;Parent=Physo134996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 212123 213649 . - . ID=Physo134996.1;Parent=Physo134996;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_35 . CDS 212244 213638 . - 0 ID=Physo134996;Parent=Physo134996;rank=1 scaffold_35 ensembl protein_coding_gene 214985 220549 . + . ID=Physo134997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350049;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 214985 220549 . + . ID=Physo134997;Parent=Physo134997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 214985 220549 . + 0 ID=Physo134997;Parent=Physo134997;rank=1 scaffold_35 . exon 214985 220549 . + . ID=Physo134997.1;Parent=Physo134997;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 209363 210961 . - . ID=Physo157123;biotype=protein_coding;external_name=C_scaffold_35000015;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 209363 210961 . - . ID=Physo157123;Parent=Physo157123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 209363 209367 . - 0 ID=Physo157123;Parent=Physo157123;rank=3 scaffold_35 . exon 209363 209367 . - . ID=Physo157123.3;Parent=Physo157123;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 209408 209940 . - 0 ID=Physo157123;Parent=Physo157123;rank=2 scaffold_35 . exon 209408 209940 . - . ID=Physo157123.2;Parent=Physo157123;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 210027 210961 . - 0 ID=Physo157123;Parent=Physo157123;rank=1 scaffold_35 . exon 210027 210961 . - . ID=Physo157123.1;Parent=Physo157123;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . repeat_region 219488 219528 . ? . description=trf scaffold_35 . repeat_region 221483 221496 . ? . description=dust scaffold_35 ensembl protein_coding_gene 220767 221659 . - . ID=Physo134998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350050;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 220767 221659 . - . ID=Physo134998;Parent=Physo134998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 220767 221103 . - . ID=Physo134998.4;Parent=Physo134998;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_35 . CDS 220845 221103 . - 0 ID=Physo134998;Parent=Physo134998;rank=4 scaffold_35 . CDS 221187 221340 . - 0 ID=Physo134998;Parent=Physo134998;rank=3 scaffold_35 . exon 221187 221340 . - . ID=Physo134998.3;Parent=Physo134998;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . CDS 221414 221473 . - 0 ID=Physo134998;Parent=Physo134998;rank=2 scaffold_35 . exon 221414 221473 . - . ID=Physo134998.2;Parent=Physo134998;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 221555 221657 . - 0 ID=Physo134998;Parent=Physo134998;rank=1 scaffold_35 . exon 221555 221659 . - . ID=Physo134998.1;Parent=Physo134998;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_35 ensembl protein_coding_gene 222807 223691 . + . ID=Physo134999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350051;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 222807 223691 . + . ID=Physo134999;Parent=Physo134999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 222807 223691 . + . ID=Physo134999.1;Parent=Physo134999;constitutive=1;ensembl_phase=-1;rank=1 scaffold_35 . CDS 222900 223691 . + 0 ID=Physo134999;Parent=Physo134999;rank=1 scaffold_35 . biological_region 229758 229765 0.999 + . logic_name=eponine scaffold_35 . biological_region 229779 229784 0.999 + . logic_name=eponine scaffold_35 . biological_region 229843 229846 0.999 - . logic_name=eponine scaffold_35 . biological_region 230733 230738 0.999 - . logic_name=eponine scaffold_35 . biological_region 231437 231440 0.999 - . logic_name=eponine scaffold_35 . biological_region 233768 233770 0.999 - . logic_name=eponine scaffold_35 . biological_region 233823 233826 0.999 + . logic_name=eponine scaffold_35 . biological_region 233937 233937 0.999 - . logic_name=eponine scaffold_35 . biological_region 234928 234931 0.999 - . logic_name=eponine scaffold_35 . biological_region 235091 235094 0.999 - . logic_name=eponine scaffold_35 . biological_region 235206 235206 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 234145 241642 . - . ID=Physo135000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350052;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 234145 241642 . - . ID=Physo135000;Parent=Physo135000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 234145 234636 . - . ID=Physo135000.8;Parent=Physo135000;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_35 . CDS 234406 234636 . - 0 ID=Physo135000;Parent=Physo135000;rank=8 scaffold_35 . CDS 234669 234926 . - 0 ID=Physo135000;Parent=Physo135000;rank=7 scaffold_35 . exon 234669 234926 . - . ID=Physo135000.7;Parent=Physo135000;constitutive=1;rank=7 scaffold_35 . CDS 235040 237474 . - 0 ID=Physo135000;Parent=Physo135000;rank=6 scaffold_35 . exon 235040 237474 . - . ID=Physo135000.6;Parent=Physo135000;constitutive=1;ensembl_phase=1;rank=6 scaffold_35 . CDS 237600 239682 . - 0 ID=Physo135000;Parent=Physo135000;rank=5 scaffold_35 . CDS 239729 240053 . - 0 ID=Physo135000;Parent=Physo135000;rank=4 scaffold_35 . CDS 240316 240625 . - 0 ID=Physo135000;Parent=Physo135000;rank=3 scaffold_35 . CDS 240842 241533 . - 0 ID=Physo135000;Parent=Physo135000;rank=2 scaffold_35 . CDS 241584 241642 . - 0 ID=Physo135000;Parent=Physo135000;rank=1 scaffold_35 . repeat_region 239674 239693 . ? . description=trf scaffold_35 . exon 237600 239682 . - . ID=Physo135000.5;Parent=Physo135000;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_35 . exon 239729 240053 . - . ID=Physo135000.4;Parent=Physo135000;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . exon 240316 240625 . - . ID=Physo135000.3;Parent=Physo135000;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . exon 240842 241533 . - . ID=Physo135000.2;Parent=Physo135000;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . exon 241584 241642 . - . ID=Physo135000.1;Parent=Physo135000;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 245129 248722 . + . ID=Physo135001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350053;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 245129 248722 . + . ID=Physo135001;Parent=Physo135001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 245129 245171 . + 0 ID=Physo135001;Parent=Physo135001;rank=1 scaffold_35 . exon 245129 245171 . + . ID=Physo135001.1;Parent=Physo135001;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 245219 245518 . + 0 ID=Physo135001;Parent=Physo135001;rank=2 scaffold_35 . exon 245219 245518 . + . ID=Physo135001.2;Parent=Physo135001;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 245582 246419 . + 0 ID=Physo135001;Parent=Physo135001;rank=3 scaffold_35 . exon 245582 246419 . + . ID=Physo135001.3;Parent=Physo135001;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . CDS 246790 247046 . + 0 ID=Physo135001;Parent=Physo135001;rank=4 scaffold_35 . CDS 247137 248722 . + 0 ID=Physo135001;Parent=Physo135001;rank=5 scaffold_35 . biological_region 247978 247981 0.999 - . logic_name=eponine scaffold_35 . repeat_region 252932 252946 . ? . description=dust scaffold_35 . biological_region 253050 253059 0.999 + . logic_name=eponine scaffold_35 . biological_region 253526 253526 0.999 - . logic_name=eponine scaffold_35 . repeat_region 254685 254692 . ? . description=dust scaffold_35 . repeat_region 254958 254966 . ? . description=dust scaffold_35 . exon 246790 247046 . + . ID=Physo135001.4;Parent=Physo135001;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_35 . exon 247137 248722 . + . ID=Physo135001.5;Parent=Physo135001;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 ensembl protein_coding_gene 249028 249498 . + . ID=Physo135002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350054;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 249028 249498 . + . ID=Physo135002;Parent=Physo135002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 249028 249498 . + 0 ID=Physo135002;Parent=Physo135002;rank=1 scaffold_35 . exon 249028 249498 . + . ID=Physo135002.1;Parent=Physo135002;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 249639 251003 . - . ID=Physo135003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350055;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 249639 251003 . - . ID=Physo135003;Parent=Physo135003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 249639 249766 . - 0 ID=Physo135003;Parent=Physo135003;rank=7 scaffold_35 . exon 249639 249766 . - . ID=Physo135003.7;Parent=Physo135003;constitutive=1;ensembl_phase=1;rank=7 scaffold_35 . CDS 249835 250001 . - 0 ID=Physo135003;Parent=Physo135003;rank=6 scaffold_35 . exon 249835 250001 . - . ID=Physo135003.6;Parent=Physo135003;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_35 . CDS 250164 250306 . - 0 ID=Physo135003;Parent=Physo135003;rank=5 scaffold_35 . exon 250164 250306 . - . ID=Physo135003.5;Parent=Physo135003;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 250373 250460 . - 0 ID=Physo135003;Parent=Physo135003;rank=4 scaffold_35 . exon 250373 250460 . - . ID=Physo135003.4;Parent=Physo135003;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 250503 250580 . - 0 ID=Physo135003;Parent=Physo135003;rank=3 scaffold_35 . exon 250503 250580 . - . ID=Physo135003.3;Parent=Physo135003;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_35 . CDS 250658 250781 . - 0 ID=Physo135003;Parent=Physo135003;rank=2 scaffold_35 . exon 250658 250781 . - . ID=Physo135003.2;Parent=Physo135003;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 250868 251003 . - 0 ID=Physo135003;Parent=Physo135003;rank=1 scaffold_35 . exon 250868 251003 . - . ID=Physo135003.1;Parent=Physo135003;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 253748 254095 . - . ID=Physo135004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350056;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 253748 254095 . - . ID=Physo135004;Parent=Physo135004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 253748 254095 . - 0 ID=Physo135004;Parent=Physo135004;rank=1 scaffold_35 . exon 253748 254095 . - . ID=Physo135004.1;Parent=Physo135004;constitutive=1;rank=1 scaffold_35 . repeat_region 266654 266662 . ? . description=dust scaffold_35 . repeat_region 269329 269346 . ? . description=dust scaffold_35 . repeat_region 269416 269425 . ? . description=dust scaffold_35 . biological_region 274439 274439 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 271029 271926 . - . ID=Physo135005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350057;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 271029 271926 . - . ID=Physo135005;Parent=Physo135005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 271029 271083 . - 0 ID=Physo135005;Parent=Physo135005;rank=2 scaffold_35 . exon 271029 271083 . - . ID=Physo135005.2;Parent=Physo135005;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 271250 271926 . - 0 ID=Physo135005;Parent=Physo135005;rank=1 scaffold_35 . exon 271250 271926 . - . ID=Physo135005.1;Parent=Physo135005;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 273876 275136 . - . ID=Physo135006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350058;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 273876 275136 . - . ID=Physo135006;Parent=Physo135006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 273876 274039 . - 0 ID=Physo135006;Parent=Physo135006;rank=5 scaffold_35 . exon 273876 274039 . - . ID=Physo135006.5;Parent=Physo135006;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 274192 274305 . - 0 ID=Physo135006;Parent=Physo135006;rank=4 scaffold_35 . exon 274192 274305 . - . ID=Physo135006.4;Parent=Physo135006;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 274349 274688 . - 0 ID=Physo135006;Parent=Physo135006;rank=3 scaffold_35 . exon 274349 274688 . - . ID=Physo135006.3;Parent=Physo135006;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_35 . CDS 274738 274871 . - 0 ID=Physo135006;Parent=Physo135006;rank=2 scaffold_35 . exon 274738 274871 . - . ID=Physo135006.2;Parent=Physo135006;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 275073 275136 . - 0 ID=Physo135006;Parent=Physo135006;rank=1 scaffold_35 . exon 275073 275136 . - . ID=Physo135006.1;Parent=Physo135006;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 278985 279773 . + . ID=Physo135007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350059;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 278985 279773 . + . ID=Physo135007;Parent=Physo135007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 278985 279012 . + 0 ID=Physo135007;Parent=Physo135007;rank=1 scaffold_35 . exon 278985 279012 . + . ID=Physo135007.1;Parent=Physo135007;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 279055 279135 . + 0 ID=Physo135007;Parent=Physo135007;rank=2 scaffold_35 . exon 279055 279135 . + . ID=Physo135007.2;Parent=Physo135007;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 279451 279773 . + 0 ID=Physo135007;Parent=Physo135007;rank=3 scaffold_35 . exon 279451 279773 . + . ID=Physo135007.3;Parent=Physo135007;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 ensembl protein_coding_gene 281460 283235 . - . ID=Physo135008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350060;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 281460 283235 . - . ID=Physo135008;Parent=Physo135008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 281460 281857 . - 0 ID=Physo135008;Parent=Physo135008;rank=4 scaffold_35 . exon 281460 281857 . - . ID=Physo135008.4;Parent=Physo135008;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 281929 282221 . - 0 ID=Physo135008;Parent=Physo135008;rank=3 scaffold_35 . exon 281929 282221 . - . ID=Physo135008.3;Parent=Physo135008;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 282304 282810 . - 0 ID=Physo135008;Parent=Physo135008;rank=2 scaffold_35 . exon 282304 282810 . - . ID=Physo135008.2;Parent=Physo135008;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 282886 283235 . - 0 ID=Physo135008;Parent=Physo135008;rank=1 scaffold_35 . exon 282886 283235 . - . ID=Physo135008.1;Parent=Physo135008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 283694 284038 . + . ID=Physo135009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350061;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 283694 284038 . + . ID=Physo135009;Parent=Physo135009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 283694 284038 . + 0 ID=Physo135009;Parent=Physo135009;rank=1 scaffold_35 . exon 283694 284038 . + . ID=Physo135009.1;Parent=Physo135009;constitutive=1;rank=1 scaffold_35 . biological_region 287418 287420 0.999 - . logic_name=eponine scaffold_35 . biological_region 288107 288109 0.999 - . logic_name=eponine scaffold_35 . biological_region 289566 289575 0.999 + . logic_name=eponine scaffold_35 . biological_region 289601 289608 0.999 - . logic_name=eponine scaffold_35 . biological_region 289619 289625 0.999 - . logic_name=eponine scaffold_35 . biological_region 289646 289646 0.999 - . logic_name=eponine scaffold_35 . repeat_region 289651 289707 . ? . description=dust scaffold_35 . biological_region 289681 289687 0.999 - . logic_name=eponine scaffold_35 . biological_region 289701 289704 0.999 + . logic_name=eponine scaffold_35 . biological_region 289870 289870 0.999 + . logic_name=eponine scaffold_35 . biological_region 289939 289941 0.999 - . logic_name=eponine scaffold_35 . repeat_region 290216 290242 . ? . description=dust scaffold_35 . biological_region 293412 293414 0.999 + . logic_name=eponine scaffold_35 . biological_region 293436 293439 0.999 + . logic_name=eponine scaffold_35 . biological_region 293462 293462 0.999 - . logic_name=eponine scaffold_35 . biological_region 295522 295525 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 286985 287548 . + . ID=Physo135010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350062;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 286985 287548 . + . ID=Physo135010;Parent=Physo135010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 286985 287548 . + 0 ID=Physo135010;Parent=Physo135010;rank=1 scaffold_35 . exon 286985 287548 . + . ID=Physo135010.1;Parent=Physo135010;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 289427 291277 . + . ID=Physo135011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350063;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 289427 291277 . + . ID=Physo135011;Parent=Physo135011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 289427 290172 . + . ID=Physo135011.1;Parent=Physo135011;constitutive=1;ensembl_phase=-1;rank=1 scaffold_35 . CDS 289492 290172 . + 0 ID=Physo135011;Parent=Physo135011;rank=1 scaffold_35 . CDS 290245 290619 . + 0 ID=Physo135011;Parent=Physo135011;rank=2 scaffold_35 . exon 290245 290619 . + . ID=Physo135011.2;Parent=Physo135011;constitutive=1;rank=2 scaffold_35 . CDS 290693 290770 . + 0 ID=Physo135011;Parent=Physo135011;rank=3 scaffold_35 . exon 290693 290770 . + . ID=Physo135011.3;Parent=Physo135011;constitutive=1;rank=3 scaffold_35 . CDS 290850 290917 . + 0 ID=Physo135011;Parent=Physo135011;rank=4 scaffold_35 . exon 290850 290917 . + . ID=Physo135011.4;Parent=Physo135011;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 290995 291100 . + 0 ID=Physo135011;Parent=Physo135011;rank=5 scaffold_35 . exon 290995 291100 . + . ID=Physo135011.5;Parent=Physo135011;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 291245 291277 . + 0 ID=Physo135011;Parent=Physo135011;rank=6 scaffold_35 . exon 291245 291277 . + . ID=Physo135011.6;Parent=Physo135011;constitutive=1;rank=6 scaffold_35 ensembl protein_coding_gene 292541 297289 . - . ID=Physo135012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350064;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 292541 297289 . - . ID=Physo135012;Parent=Physo135012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 292541 297289 . - 0 ID=Physo135012;Parent=Physo135012;rank=1 scaffold_35 . exon 292541 297289 . - . ID=Physo135012.1;Parent=Physo135012;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 301701 310747 . - . ID=Physo135013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350065;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 301701 310747 . - . ID=Physo135013;Parent=Physo135013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 301701 307022 . - 0 ID=Physo135013;Parent=Physo135013;rank=2 scaffold_35 . exon 301701 307022 . - . ID=Physo135013.2;Parent=Physo135013;constitutive=1;rank=2 scaffold_35 . CDS 307100 310747 . - 0 ID=Physo135013;Parent=Physo135013;rank=1 scaffold_35 . biological_region 310696 310699 0.999 - . logic_name=eponine scaffold_35 . repeat_region 312240 312357 . + . description=Polinton-1_PI scaffold_35 . exon 307100 310747 . - . ID=Physo135013.1;Parent=Physo135013;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 314402 316436 . - . ID=Physo135014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350066;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 314402 316436 . - . ID=Physo135014;Parent=Physo135014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 314402 314423 . - 0 ID=Physo135014;Parent=Physo135014;rank=5 scaffold_35 . exon 314402 314423 . - . ID=Physo135014.5;Parent=Physo135014;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 314536 314619 . - 0 ID=Physo135014;Parent=Physo135014;rank=4 scaffold_35 . exon 314536 314619 . - . ID=Physo135014.4;Parent=Physo135014;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_35 . CDS 314710 315131 . - 0 ID=Physo135014;Parent=Physo135014;rank=3 scaffold_35 . exon 314710 315131 . - . ID=Physo135014.3;Parent=Physo135014;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 315472 316017 . - 0 ID=Physo135014;Parent=Physo135014;rank=2 scaffold_35 . CDS 316044 316436 . - 0 ID=Physo135014;Parent=Physo135014;rank=1 scaffold_35 . repeat_region 317698 317779 . ? . description=trf scaffold_35 . repeat_region 318773 318780 . ? . description=dust scaffold_35 . repeat_region 322127 322135 . ? . description=dust scaffold_35 . repeat_region 323035 323060 . ? . description=dust scaffold_35 . repeat_region 323145 323157 . ? . description=dust scaffold_35 . repeat_region 323378 323406 . ? . description=dust scaffold_35 . exon 315472 316017 . - . ID=Physo135014.2;Parent=Physo135014;constitutive=1;rank=2 scaffold_35 . exon 316044 316436 . - . ID=Physo135014.1;Parent=Physo135014;constitutive=1;rank=1 scaffold_35 . biological_region 327850 327850 0.999 + . logic_name=eponine scaffold_35 . biological_region 328171 328172 0.999 + . logic_name=eponine scaffold_35 . biological_region 333266 333268 0.999 + . logic_name=eponine scaffold_35 . biological_region 333355 333356 0.999 - . logic_name=eponine scaffold_35 . repeat_region 335298 335307 . ? . description=dust scaffold_35 . repeat_region 342560 342575 . ? . description=dust scaffold_35 . repeat_region 344931 344944 . ? . description=dust scaffold_35 ensembl protein_coding_gene 342627 345071 . - . ID=Physo135015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350067;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 342627 345071 . - . ID=Physo135015;Parent=Physo135015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 342627 345071 . - 0 ID=Physo135015;Parent=Physo135015;rank=1 scaffold_35 . exon 342627 345071 . - . ID=Physo135015.1;Parent=Physo135015;constitutive=1;rank=1 scaffold_35 . biological_region 345093 345095 0.999 - . logic_name=eponine scaffold_35 . biological_region 346398 346403 0.999 + . logic_name=eponine scaffold_35 . repeat_region 346876 346902 . ? . description=trf scaffold_35 . biological_region 348467 348469 0.999 + . logic_name=eponine scaffold_35 . biological_region 353854 353856 0.999 + . logic_name=eponine scaffold_35 . biological_region 353916 353922 0.999 - . logic_name=eponine scaffold_35 . biological_region 353967 353971 0.999 + . logic_name=eponine scaffold_35 . biological_region 353991 353992 0.999 - . logic_name=eponine scaffold_35 . biological_region 354185 354187 0.999 + . logic_name=eponine scaffold_35 . repeat_region 354867 355040 . ? . description=trf scaffold_35 ensembl protein_coding_gene 353159 359043 . + . ID=Physo135018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350070;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 353159 359043 . + . ID=Physo135018;Parent=Physo135018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 353159 353524 . + 0 ID=Physo135018;Parent=Physo135018;rank=1 scaffold_35 . exon 353159 353524 . + . ID=Physo135018.1;Parent=Physo135018;constitutive=1;rank=1 scaffold_35 . CDS 353657 354174 . + 0 ID=Physo135018;Parent=Physo135018;rank=2 scaffold_35 . exon 353657 354174 . + . ID=Physo135018.2;Parent=Physo135018;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 354282 354657 . + 0 ID=Physo135018;Parent=Physo135018;rank=3 scaffold_35 . exon 354282 354657 . + . ID=Physo135018.3;Parent=Physo135018;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 354843 355289 . + 0 ID=Physo135018;Parent=Physo135018;rank=4 scaffold_35 . exon 354843 355289 . + . ID=Physo135018.4;Parent=Physo135018;constitutive=1;rank=4 scaffold_35 . CDS 355461 356293 . + 0 ID=Physo135018;Parent=Physo135018;rank=5 scaffold_35 . CDS 356409 356826 . + 0 ID=Physo135018;Parent=Physo135018;rank=6 scaffold_35 . CDS 356941 359043 . + 0 ID=Physo135018;Parent=Physo135018;rank=7 scaffold_35 ensembl protein_coding_gene 345636 345998 . + . ID=Physo157131;biotype=protein_coding;external_name=C_scaffold_35000023;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 345636 345998 . + . ID=Physo157131;Parent=Physo157131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 345636 345941 . + 0 ID=Physo157131;Parent=Physo157131;rank=1 scaffold_35 . exon 345636 345941 . + . ID=Physo157131.1;Parent=Physo157131;constitutive=1;rank=1 scaffold_35 . CDS 345993 345998 . + 0 ID=Physo157131;Parent=Physo157131;rank=2 scaffold_35 . exon 345993 345998 . + . ID=Physo157131.2;Parent=Physo157131;constitutive=1;rank=2 scaffold_35 ensembl protein_coding_gene 346505 347809 . - . ID=Physo157132;biotype=protein_coding;external_name=C_scaffold_35000024;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 346505 347809 . - . ID=Physo157132;Parent=Physo157132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 346505 346808 . - 0 ID=Physo157132;Parent=Physo157132;rank=5 scaffold_35 . exon 346505 346808 . - . ID=Physo157132.5;Parent=Physo157132;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 346874 347177 . - 0 ID=Physo157132;Parent=Physo157132;rank=4 scaffold_35 . exon 346874 347177 . - . ID=Physo157132.4;Parent=Physo157132;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_35 . CDS 347293 347409 . - 0 ID=Physo157132;Parent=Physo157132;rank=3 scaffold_35 . exon 347293 347409 . - . ID=Physo157132.3;Parent=Physo157132;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 347484 347634 . - 0 ID=Physo157132;Parent=Physo157132;rank=2 scaffold_35 . exon 347484 347634 . - . ID=Physo157132.2;Parent=Physo157132;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 347723 347809 . - 0 ID=Physo157132;Parent=Physo157132;rank=1 scaffold_35 . exon 347723 347809 . - . ID=Physo157132.1;Parent=Physo157132;constitutive=1;rank=1 scaffold_35 . repeat_region 355654 358002 . + . description=GypsyPi-1c_I-int scaffold_35 . repeat_region 359755 359763 . ? . description=dust scaffold_35 . repeat_region 362544 362552 . ? . description=dust scaffold_35 . repeat_region 362996 363011 . ? . description=dust scaffold_35 ensembl pseudogenic_tRNA 359122 359193 . - . ID=EPrPSOG00000000200;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_35 ensembl transcript 359122 359193 . - . ID=EPrPSOT00000000200;Parent=EPrPSOG00000000200;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_35 . exon 359122 359193 . - . ID=EPrPSOE00000000200;Parent=EPrPSOT00000000200;constitutive=1;rank=1 scaffold_35 . exon 355461 356293 . + . ID=Physo135018.5;Parent=Physo135018;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . exon 356409 356826 . + . ID=Physo135018.6;Parent=Physo135018;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . exon 356941 359043 . + . ID=Physo135018.7;Parent=Physo135018;constitutive=1;rank=7 scaffold_35 ensembl protein_coding_gene 363654 365210 . - . ID=Physo135019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350071;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 363654 365210 . - . ID=Physo135019;Parent=Physo135019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 363654 365210 . - 0 ID=Physo135019;Parent=Physo135019;rank=1 scaffold_35 . exon 363654 365210 . - . ID=Physo135019.1;Parent=Physo135019;constitutive=1;rank=1 scaffold_35 . biological_region 366683 366688 0.999 + . logic_name=eponine scaffold_35 . biological_region 366986 366994 0.999 + . logic_name=eponine scaffold_35 . repeat_region 367048 367076 . ? . description=trf scaffold_35 . biological_region 367087 367089 0.999 - . logic_name=eponine scaffold_35 . biological_region 367209 367214 0.999 - . logic_name=eponine scaffold_35 . biological_region 367577 367582 0.999 - . logic_name=eponine scaffold_35 . biological_region 373598 373599 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 365427 366766 . - . ID=Physo108840;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350008;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 365427 366766 . - . ID=Physo108840;Parent=Physo108840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 365427 366476 . - . ID=Physo108840.2;Parent=Physo108840;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_35 . CDS 365544 366476 . - 0 ID=Physo108840;Parent=Physo108840;rank=2 scaffold_35 . CDS 366575 366766 . - 0 ID=Physo108840;Parent=Physo108840;rank=1 scaffold_35 . exon 366575 366766 . - . ID=Physo108840.1;Parent=Physo108840;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 366996 377524 . + . ID=Physo135021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350073;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 366996 377524 . + . ID=Physo135021;Parent=Physo135021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 366996 367260 . + 0 ID=Physo135021;Parent=Physo135021;rank=1 scaffold_35 . exon 366996 367260 . + . ID=Physo135021.1;Parent=Physo135021;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 367353 372812 . + 0 ID=Physo135021;Parent=Physo135021;rank=2 scaffold_35 . exon 367353 372812 . + . ID=Physo135021.2;Parent=Physo135021;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 373251 375165 . + 0 ID=Physo135021;Parent=Physo135021;rank=3 scaffold_35 . exon 373251 375165 . + . ID=Physo135021.3;Parent=Physo135021;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . CDS 375322 375665 . + 0 ID=Physo135021;Parent=Physo135021;rank=4 scaffold_35 . CDS 375820 375889 . + 0 ID=Physo135021;Parent=Physo135021;rank=5 scaffold_35 . CDS 375934 376441 . + 0 ID=Physo135021;Parent=Physo135021;rank=6 scaffold_35 . CDS 376755 376865 . + 0 ID=Physo135021;Parent=Physo135021;rank=7 scaffold_35 . CDS 376940 377524 . + 0 ID=Physo135021;Parent=Physo135021;rank=8 scaffold_35 . exon 375322 375665 . + . ID=Physo135021.4;Parent=Physo135021;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_35 . exon 375820 375889 . + . ID=Physo135021.5;Parent=Physo135021;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_35 . exon 375934 376441 . + . ID=Physo135021.6;Parent=Physo135021;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . exon 376755 376865 . + . ID=Physo135021.7;Parent=Physo135021;constitutive=1;rank=7 scaffold_35 . exon 376940 377524 . + . ID=Physo135021.8;Parent=Physo135021;constitutive=1;rank=8 scaffold_35 ensembl protein_coding_gene 384217 385834 . + . ID=Physo135022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350074;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 384217 385834 . + . ID=Physo135022;Parent=Physo135022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 384217 384232 . + 0 ID=Physo135022;Parent=Physo135022;rank=1 scaffold_35 . exon 384217 384232 . + . ID=Physo135022.1;Parent=Physo135022;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 384452 385155 . + 0 ID=Physo135022;Parent=Physo135022;rank=2 scaffold_35 . exon 384452 385155 . + . ID=Physo135022.2;Parent=Physo135022;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 385385 385695 . + 0 ID=Physo135022;Parent=Physo135022;rank=3 scaffold_35 . CDS 385825 385834 . + 0 ID=Physo135022;Parent=Physo135022;rank=4 scaffold_35 . repeat_region 389236 389246 . ? . description=dust scaffold_35 . repeat_region 390803 392929 . + . description=GypsyPi-1c_I-int scaffold_35 . repeat_region 392223 392275 . ? . description=trf scaffold_35 . repeat_region 392223 392275 . ? . description=trf scaffold_35 . repeat_region 392732 393064 . ? . description=trf scaffold_35 . repeat_region 392746 393064 . ? . description=trf scaffold_35 . repeat_region 392901 393075 . + . description=GypsyPi-1c_I-int scaffold_35 . repeat_region 393938 394010 . + . description=GypsyPi-1c_I-int scaffold_35 . exon 385385 385695 . + . ID=Physo135022.3;Parent=Physo135022;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . exon 385825 385834 . + . ID=Physo135022.4;Parent=Physo135022;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 ensembl protein_coding_gene 387325 388934 . - . ID=Physo135023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350075;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 387325 388934 . - . ID=Physo135023;Parent=Physo135023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 387325 387608 . - 0 ID=Physo135023;Parent=Physo135023;rank=4 scaffold_35 . exon 387325 387608 . - . ID=Physo135023.4;Parent=Physo135023;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 . CDS 387673 388601 . - 0 ID=Physo135023;Parent=Physo135023;rank=3 scaffold_35 . exon 387673 388601 . - . ID=Physo135023.3;Parent=Physo135023;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 388676 388808 . - 0 ID=Physo135023;Parent=Physo135023;rank=2 scaffold_35 . exon 388676 388808 . - . ID=Physo135023.2;Parent=Physo135023;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 388874 388934 . - 0 ID=Physo135023;Parent=Physo135023;rank=1 scaffold_35 . exon 388874 388934 . - . ID=Physo135023.1;Parent=Physo135023;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 390890 391726 . + . ID=Physo135024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350076;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 390890 391726 . + . ID=Physo135024;Parent=Physo135024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 390890 391726 . + 0 ID=Physo135024;Parent=Physo135024;rank=1 scaffold_35 . exon 390890 391726 . + . ID=Physo135024.1;Parent=Physo135024;constitutive=1;rank=1 scaffold_35 . biological_region 394507 394508 0.999 + . logic_name=eponine scaffold_35 . repeat_region 395521 395809 . + . description=GypsyPi-1c_LTR scaffold_35 . biological_region 396863 396867 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 396484 400425 . - . ID=Physo135025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350077;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 396484 400425 . - . ID=Physo135025;Parent=Physo135025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 396484 396621 . - 0 ID=Physo135025;Parent=Physo135025;rank=8 scaffold_35 . exon 396484 396621 . - . ID=Physo135025.8;Parent=Physo135025;constitutive=1;rank=8 scaffold_35 . CDS 396669 397304 . - 0 ID=Physo135025;Parent=Physo135025;rank=7 scaffold_35 . exon 396669 397304 . - . ID=Physo135025.7;Parent=Physo135025;constitutive=1;rank=7 scaffold_35 . CDS 397459 397593 . - 0 ID=Physo135025;Parent=Physo135025;rank=6 scaffold_35 . exon 397459 397593 . - . ID=Physo135025.6;Parent=Physo135025;constitutive=1;rank=6 scaffold_35 . CDS 397626 397852 . - 0 ID=Physo135025;Parent=Physo135025;rank=5 scaffold_35 . exon 397626 397852 . - . ID=Physo135025.5;Parent=Physo135025;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 397954 398176 . - 0 ID=Physo135025;Parent=Physo135025;rank=4 scaffold_35 . exon 397954 398176 . - . ID=Physo135025.4;Parent=Physo135025;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_35 . CDS 398330 398929 . - 0 ID=Physo135025;Parent=Physo135025;rank=3 scaffold_35 . exon 398330 398929 . - . ID=Physo135025.3;Parent=Physo135025;constitutive=1;rank=3 scaffold_35 . CDS 398957 399445 . - 0 ID=Physo135025;Parent=Physo135025;rank=2 scaffold_35 . exon 398957 399445 . - . ID=Physo135025.2;Parent=Physo135025;constitutive=1;rank=2 scaffold_35 . CDS 399538 400425 . - 0 ID=Physo135025;Parent=Physo135025;rank=1 scaffold_35 . exon 399538 400425 . - . ID=Physo135025.1;Parent=Physo135025;constitutive=1;rank=1 scaffold_35 . repeat_region 404868 404875 . ? . description=dust scaffold_35 . repeat_region 405223 405376 . + . description=Gypsy-1-LTR_PI scaffold_35 . repeat_region 405398 410356 . + . description=Gypsy-2-I_PI-int scaffold_35 . repeat_region 411114 411168 . ? . description=trf scaffold_35 . repeat_region 411162 411231 . ? . description=trf scaffold_35 . repeat_region 412125 412278 . + . description=Gypsy-1-LTR_PI scaffold_35 ensembl protein_coding_gene 405441 409061 . + . ID=Physo135026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350078;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 405441 409061 . + . ID=Physo135026;Parent=Physo135026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 405441 405718 . + 0 ID=Physo135026;Parent=Physo135026;rank=1 scaffold_35 . exon 405441 405718 . + . ID=Physo135026.1;Parent=Physo135026;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 405868 406244 . + 0 ID=Physo135026;Parent=Physo135026;rank=2 scaffold_35 . exon 405868 406244 . + . ID=Physo135026.2;Parent=Physo135026;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 406366 406600 . + 0 ID=Physo135026;Parent=Physo135026;rank=3 scaffold_35 . exon 406366 406600 . + . ID=Physo135026.3;Parent=Physo135026;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . CDS 407100 407784 . + 0 ID=Physo135026;Parent=Physo135026;rank=4 scaffold_35 . exon 407100 407784 . + . ID=Physo135026.4;Parent=Physo135026;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 407816 407967 . + 0 ID=Physo135026;Parent=Physo135026;rank=5 scaffold_35 . exon 407816 407967 . + . ID=Physo135026.5;Parent=Physo135026;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 408182 409061 . + 0 ID=Physo135026;Parent=Physo135026;rank=6 scaffold_35 . exon 408182 409061 . + . ID=Physo135026.6;Parent=Physo135026;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . biological_region 414458 414461 0.999 + . logic_name=eponine scaffold_35 . biological_region 418820 418825 0.999 - . logic_name=eponine scaffold_35 . biological_region 420259 420263 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 419326 422062 . + . ID=Physo135027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350079;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 419326 422062 . + . ID=Physo135027;Parent=Physo135027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 419326 419667 . + 0 ID=Physo135027;Parent=Physo135027;rank=1 scaffold_35 . exon 419326 419667 . + . ID=Physo135027.1;Parent=Physo135027;constitutive=1;rank=1 scaffold_35 . CDS 419742 420712 . + 0 ID=Physo135027;Parent=Physo135027;rank=2 scaffold_35 . exon 419742 420712 . + . ID=Physo135027.2;Parent=Physo135027;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 421012 422062 . + 0 ID=Physo135027;Parent=Physo135027;rank=3 scaffold_35 . exon 421012 422062 . + . ID=Physo135027.3;Parent=Physo135027;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 ensembl protein_coding_gene 423050 424333 . + . ID=Physo135028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350080;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 423050 424333 . + . ID=Physo135028;Parent=Physo135028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 423050 424333 . + 0 ID=Physo135028;Parent=Physo135028;rank=1 scaffold_35 . exon 423050 424333 . + . ID=Physo135028.1;Parent=Physo135028;constitutive=1;rank=1 scaffold_35 . repeat_region 426488 426501 . ? . description=dust scaffold_35 . repeat_region 428841 428920 . ? . description=dust scaffold_35 . repeat_region 430750 430962 . ? . description=trf scaffold_35 . repeat_region 433495 433529 . ? . description=trf scaffold_35 ensembl protein_coding_gene 428956 434018 . - . ID=Physo135029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350081;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 428956 434018 . - . ID=Physo135029;Parent=Physo135029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 428956 433787 . - 0 ID=Physo135029;Parent=Physo135029;rank=2 scaffold_35 . exon 428956 433787 . - . ID=Physo135029.2;Parent=Physo135029;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 433886 434018 . - 0 ID=Physo135029;Parent=Physo135029;rank=1 scaffold_35 . biological_region 434047 434050 0.999 - . logic_name=eponine scaffold_35 . biological_region 436793 436796 0.999 - . logic_name=eponine scaffold_35 . biological_region 441035 441040 0.999 + . logic_name=eponine scaffold_35 . exon 433886 434018 . - . ID=Physo135029.1;Parent=Physo135029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 ensembl protein_coding_gene 440514 441767 . + . ID=Physo135030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350082;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 440514 441767 . + . ID=Physo135030;Parent=Physo135030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 440514 441259 . + 0 ID=Physo135030;Parent=Physo135030;rank=1 scaffold_35 . exon 440514 441259 . + . ID=Physo135030.1;Parent=Physo135030;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 441321 441705 . + 0 ID=Physo135030;Parent=Physo135030;rank=2 scaffold_35 . exon 441321 441705 . + . ID=Physo135030.2;Parent=Physo135030;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 441747 441767 . + 0 ID=Physo135030;Parent=Physo135030;rank=3 scaffold_35 . exon 441747 441767 . + . ID=Physo135030.3;Parent=Physo135030;constitutive=1;rank=3 scaffold_35 ensembl protein_coding_gene 443510 444525 . - . ID=Physo135031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350083;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 443510 444525 . - . ID=Physo135031;Parent=Physo135031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 443510 443551 . - 0 ID=Physo135031;Parent=Physo135031;rank=2 scaffold_35 . exon 443510 443551 . - . ID=Physo135031.2;Parent=Physo135031;constitutive=1;rank=2 scaffold_35 . CDS 443596 444525 . - 0 ID=Physo135031;Parent=Physo135031;rank=1 scaffold_35 . exon 443596 444525 . - . ID=Physo135031.1;Parent=Physo135031;constitutive=1;rank=1 scaffold_35 . repeat_region 444806 444830 . ? . description=trf scaffold_35 . repeat_region 446538 446563 . ? . description=dust scaffold_35 . repeat_region 446538 446563 . ? . description=trf scaffold_35 . repeat_region 447735 447763 . ? . description=trf scaffold_35 . repeat_region 451007 451026 . ? . description=trf scaffold_35 . repeat_region 451007 451028 . ? . description=dust scaffold_35 ensembl protein_coding_gene 444783 446831 . - . ID=Physo135032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350084;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 444783 446831 . - . ID=Physo135032;Parent=Physo135032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 444783 446831 . - 0 ID=Physo135032;Parent=Physo135032;rank=1 scaffold_35 . exon 444783 446831 . - . ID=Physo135032.1;Parent=Physo135032;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 447598 451050 . + . ID=Physo135033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350085;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 447598 451050 . + . ID=Physo135033;Parent=Physo135033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 447598 451050 . + 0 ID=Physo135033;Parent=Physo135033;rank=1 scaffold_35 . exon 447598 451050 . + . ID=Physo135033.1;Parent=Physo135033;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 451238 453307 . - . ID=Physo135034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350086;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 451238 453307 . - . ID=Physo135034;Parent=Physo135034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 451238 451765 . - . ID=Physo135034.4;Parent=Physo135034;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_35 . CDS 451609 451765 . - 0 ID=Physo135034;Parent=Physo135034;rank=4 scaffold_35 . CDS 451845 452018 . - 0 ID=Physo135034;Parent=Physo135034;rank=3 scaffold_35 . exon 451845 452018 . - . ID=Physo135034.3;Parent=Physo135034;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_35 . CDS 452095 452205 . - 0 ID=Physo135034;Parent=Physo135034;rank=2 scaffold_35 . exon 452095 452205 . - . ID=Physo135034.2;Parent=Physo135034;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 452283 453307 . - 0 ID=Physo135034;Parent=Physo135034;rank=1 scaffold_35 . exon 452283 453307 . - . ID=Physo135034.1;Parent=Physo135034;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . biological_region 453487 453491 0.999 - . logic_name=eponine scaffold_35 . biological_region 454846 454850 0.999 - . logic_name=eponine scaffold_35 . biological_region 456342 456345 0.999 - . logic_name=eponine scaffold_35 . biological_region 460620 460623 0.999 - . logic_name=eponine scaffold_35 . biological_region 460675 460678 0.999 + . logic_name=eponine scaffold_35 . biological_region 460784 460791 0.999 + . logic_name=eponine scaffold_35 . biological_region 461473 461473 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 459285 459731 . - . ID=Physo108841;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350009;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 459285 459731 . - . ID=Physo108841;Parent=Physo108841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 459285 459731 . - 0 ID=Physo108841;Parent=Physo108841;rank=1 scaffold_35 . exon 459285 459731 . - . ID=Physo108841.1;Parent=Physo108841;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 454581 455577 . - . ID=Physo135035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350087;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 454581 455577 . - . ID=Physo135035;Parent=Physo135035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 454581 454658 . - 0 ID=Physo135035;Parent=Physo135035;rank=6 scaffold_35 . exon 454581 454658 . - . ID=Physo135035.6;Parent=Physo135035;constitutive=1;rank=6 scaffold_35 . CDS 454750 454834 . - 0 ID=Physo135035;Parent=Physo135035;rank=5 scaffold_35 . exon 454750 454834 . - . ID=Physo135035.5;Parent=Physo135035;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 454977 455020 . - 0 ID=Physo135035;Parent=Physo135035;rank=4 scaffold_35 . exon 454977 455020 . - . ID=Physo135035.4;Parent=Physo135035;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 455101 455181 . - 0 ID=Physo135035;Parent=Physo135035;rank=3 scaffold_35 . exon 455101 455181 . - . ID=Physo135035.3;Parent=Physo135035;constitutive=1;rank=3 scaffold_35 . CDS 455266 455358 . - 0 ID=Physo135035;Parent=Physo135035;rank=2 scaffold_35 . exon 455266 455358 . - . ID=Physo135035.2;Parent=Physo135035;constitutive=1;rank=2 scaffold_35 . CDS 455422 455577 . - 0 ID=Physo135035;Parent=Physo135035;rank=1 scaffold_35 . exon 455422 455577 . - . ID=Physo135035.1;Parent=Physo135035;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 456046 457307 . - . ID=Physo135036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350088;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 456046 457307 . - . ID=Physo135036;Parent=Physo135036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 456046 456567 . - 0 ID=Physo135036;Parent=Physo135036;rank=4 scaffold_35 . exon 456046 456567 . - . ID=Physo135036.4;Parent=Physo135036;constitutive=1;rank=4 scaffold_35 . CDS 456647 456797 . - 0 ID=Physo135036;Parent=Physo135036;rank=3 scaffold_35 . exon 456647 456797 . - . ID=Physo135036.3;Parent=Physo135036;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 456873 457063 . - 0 ID=Physo135036;Parent=Physo135036;rank=2 scaffold_35 . exon 456873 457063 . - . ID=Physo135036.2;Parent=Physo135036;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 457149 457307 . - 0 ID=Physo135036;Parent=Physo135036;rank=1 scaffold_35 . exon 457149 457307 . - . ID=Physo135036.1;Parent=Physo135036;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 457569 459234 . + . ID=Physo135037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350089;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 457569 459234 . + . ID=Physo135037;Parent=Physo135037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 457569 458105 . + 0 ID=Physo135037;Parent=Physo135037;rank=1 scaffold_35 . exon 457569 458105 . + . ID=Physo135037.1;Parent=Physo135037;constitutive=1;rank=1 scaffold_35 . CDS 458251 459216 . + 0 ID=Physo135037;Parent=Physo135037;rank=2 scaffold_35 . exon 458251 459234 . + . ID=Physo135037.2;Parent=Physo135037;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_35 ensembl protein_coding_gene 459832 461624 . - . ID=Physo135039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350091;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 459832 461624 . - . ID=Physo135039;Parent=Physo135039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 459832 460048 . - . ID=Physo135039.3;Parent=Physo135039;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_35 . CDS 460010 460048 . - 0 ID=Physo135039;Parent=Physo135039;rank=3 scaffold_35 . CDS 460134 461298 . - 0 ID=Physo135039;Parent=Physo135039;rank=2 scaffold_35 . exon 460134 461298 . - . ID=Physo135039.2;Parent=Physo135039;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 461389 461624 . - 0 ID=Physo135039;Parent=Physo135039;rank=1 scaffold_35 . exon 461389 461624 . - . ID=Physo135039.1;Parent=Physo135039;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . repeat_region 465621 465648 . ? . description=trf scaffold_35 . repeat_region 466111 466414 . - . description=GypsyPi-1c_LTR scaffold_35 . repeat_region 466415 466737 . - . description=GypsyPi-1c_I-int scaffold_35 . repeat_region 467304 471240 . - . description=GypsyPi-1c_I-int scaffold_35 . repeat_region 471243 473211 . - . description=GypsyPi-1c_I-int scaffold_35 ensembl protein_coding_gene 466601 468805 . + . ID=Physo135040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350092;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 466601 468805 . + . ID=Physo135040;Parent=Physo135040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 466601 466791 . + 0 ID=Physo135040;Parent=Physo135040;rank=1 scaffold_35 . exon 466601 466791 . + . ID=Physo135040.1;Parent=Physo135040;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 466892 468305 . + 0 ID=Physo135040;Parent=Physo135040;rank=2 scaffold_35 . exon 466892 468305 . + . ID=Physo135040.2;Parent=Physo135040;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 468365 468805 . + 0 ID=Physo135040;Parent=Physo135040;rank=3 scaffold_35 . exon 468365 468805 . + . ID=Physo135040.3;Parent=Physo135040;constitutive=1;rank=3 scaffold_35 ensembl protein_coding_gene 469088 473124 . - . ID=Physo135041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350093;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 469088 473124 . - . ID=Physo135041;Parent=Physo135041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 469088 469096 . - 0 ID=Physo135041;Parent=Physo135041;rank=8 scaffold_35 . exon 469088 469096 . - . ID=Physo135041.8;Parent=Physo135041;constitutive=1;rank=8 scaffold_35 . CDS 469143 469727 . - 0 ID=Physo135041;Parent=Physo135041;rank=7 scaffold_35 . exon 469143 469727 . - . ID=Physo135041.7;Parent=Physo135041;constitutive=1;rank=7 scaffold_35 . CDS 469787 470111 . - 0 ID=Physo135041;Parent=Physo135041;rank=6 scaffold_35 . exon 469787 470111 . - . ID=Physo135041.6;Parent=Physo135041;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . CDS 470141 470481 . - 0 ID=Physo135041;Parent=Physo135041;rank=5 scaffold_35 . exon 470141 470481 . - . ID=Physo135041.5;Parent=Physo135041;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 470587 471237 . - 0 ID=Physo135041;Parent=Physo135041;rank=4 scaffold_35 . exon 470587 471237 . - . ID=Physo135041.4;Parent=Physo135041;constitutive=1;rank=4 scaffold_35 . CDS 471462 472051 . - 0 ID=Physo135041;Parent=Physo135041;rank=3 scaffold_35 . exon 471462 472051 . - . ID=Physo135041.3;Parent=Physo135041;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 472343 472691 . - 0 ID=Physo135041;Parent=Physo135041;rank=2 scaffold_35 . exon 472343 472691 . - . ID=Physo135041.2;Parent=Physo135041;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 472888 473124 . - 0 ID=Physo135041;Parent=Physo135041;rank=1 scaffold_35 . exon 472888 473124 . - . ID=Physo135041.1;Parent=Physo135041;constitutive=1;rank=1 scaffold_35 . biological_region 480219 480220 0.999 - . logic_name=eponine scaffold_35 . repeat_region 480622 480635 . ? . description=dust scaffold_35 . repeat_region 481300 481308 . ? . description=dust scaffold_35 . biological_region 481948 481952 0.999 - . logic_name=eponine scaffold_35 . biological_region 482776 482779 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 481496 483063 . + . ID=Physo135042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350094;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 481496 483063 . + . ID=Physo135042;Parent=Physo135042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 481496 481635 . + 0 ID=Physo135042;Parent=Physo135042;rank=1 scaffold_35 . exon 481496 481635 . + . ID=Physo135042.1;Parent=Physo135042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 481711 482230 . + 0 ID=Physo135042;Parent=Physo135042;rank=2 scaffold_35 . exon 481711 482230 . + . ID=Physo135042.2;Parent=Physo135042;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 482330 482588 . + 0 ID=Physo135042;Parent=Physo135042;rank=3 scaffold_35 . exon 482330 482588 . + . ID=Physo135042.3;Parent=Physo135042;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_35 . CDS 482660 483063 . + 0 ID=Physo135042;Parent=Physo135042;rank=4 scaffold_35 . exon 482660 483063 . + . ID=Physo135042.4;Parent=Physo135042;constitutive=1;ensembl_phase=1;rank=4 scaffold_35 ensembl protein_coding_gene 492167 493508 . - . ID=Physo116641;biotype=protein_coding;external_name=estExt_Genewise1.C_350021;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 492167 493508 . - . ID=Physo116641;Parent=Physo116641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 492167 493508 . - . ID=Physo116641.1;Parent=Physo116641;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_35 . CDS 492330 493508 . - 0 ID=Physo116641;Parent=Physo116641;rank=1 scaffold_35 ensembl protein_coding_gene 489378 490398 . - . ID=Physo135043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350095;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 489378 490398 . - . ID=Physo135043;Parent=Physo135043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 489378 489828 . - 0 ID=Physo135043;Parent=Physo135043;rank=2 scaffold_35 . exon 489378 489828 . - . ID=Physo135043.2;Parent=Physo135043;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 489968 490398 . - 0 ID=Physo135043;Parent=Physo135043;rank=1 scaffold_35 . exon 489968 490398 . - . ID=Physo135043.1;Parent=Physo135043;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . biological_region 493210 493214 0.999 + . logic_name=eponine scaffold_35 . biological_region 493269 493274 0.999 - . logic_name=eponine scaffold_35 . biological_region 493279 493284 0.999 + . logic_name=eponine scaffold_35 . biological_region 493363 493367 0.999 - . logic_name=eponine scaffold_35 . repeat_region 493465 493503 . ? . description=dust scaffold_35 . repeat_region 493931 493938 . ? . description=dust scaffold_35 . biological_region 494013 494022 0.999 + . logic_name=eponine scaffold_35 . biological_region 494040 494044 0.999 + . logic_name=eponine scaffold_35 . biological_region 494081 494091 0.999 - . logic_name=eponine scaffold_35 . biological_region 494106 494109 0.999 - . logic_name=eponine scaffold_35 . biological_region 494126 494136 0.999 - . logic_name=eponine scaffold_35 . biological_region 494144 494148 0.999 + . logic_name=eponine scaffold_35 . biological_region 494153 494154 0.999 - . logic_name=eponine scaffold_35 . repeat_region 494406 494432 . ? . description=trf scaffold_35 . repeat_region 494958 494965 . ? . description=dust scaffold_35 . repeat_region 495486 495494 . ? . description=dust scaffold_35 . repeat_region 496835 496872 . ? . description=dust scaffold_35 . biological_region 496972 496976 0.999 + . logic_name=eponine scaffold_35 . biological_region 497055 497060 0.999 - . logic_name=eponine scaffold_35 . biological_region 497065 497070 0.999 + . logic_name=eponine scaffold_35 . biological_region 497125 497129 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 498912 500606 . + . ID=Physo135046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350098;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 498912 500606 . + . ID=Physo135046;Parent=Physo135046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 498912 499007 . + 0 ID=Physo135046;Parent=Physo135046;rank=1 scaffold_35 . exon 498912 499007 . + . ID=Physo135046.1;Parent=Physo135046;constitutive=1;rank=1 scaffold_35 . CDS 499084 499326 . + 0 ID=Physo135046;Parent=Physo135046;rank=2 scaffold_35 . exon 499084 499326 . + . ID=Physo135046.2;Parent=Physo135046;constitutive=1;rank=2 scaffold_35 . CDS 499395 500606 . + 0 ID=Physo135046;Parent=Physo135046;rank=3 scaffold_35 . exon 499395 500606 . + . ID=Physo135046.3;Parent=Physo135046;constitutive=1;rank=3 scaffold_35 ensembl protein_coding_gene 500718 503051 . - . ID=Physo135047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350099;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 500718 503051 . - . ID=Physo135047;Parent=Physo135047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 500718 501226 . - 0 ID=Physo135047;Parent=Physo135047;rank=3 scaffold_35 . exon 500718 501226 . - . ID=Physo135047.3;Parent=Physo135047;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 501371 502526 . - 0 ID=Physo135047;Parent=Physo135047;rank=2 scaffold_35 . exon 501371 502526 . - . ID=Physo135047.2;Parent=Physo135047;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 502599 503051 . - 0 ID=Physo135047;Parent=Physo135047;rank=1 scaffold_35 . exon 502599 503051 . - . ID=Physo135047.1;Parent=Physo135047;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 496942 497961 . + . ID=Physo157135;biotype=protein_coding;external_name=C_scaffold_35000027;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 496942 497961 . + . ID=Physo157135;Parent=Physo157135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 496942 497961 . + 0 ID=Physo157135;Parent=Physo157135;rank=1 scaffold_35 . exon 496942 497961 . + . ID=Physo157135.1;Parent=Physo157135;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 503560 504585 . - . ID=Physo135048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350100;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 503560 504585 . - . ID=Physo135048;Parent=Physo135048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 503560 504585 . - 0 ID=Physo135048;Parent=Physo135048;rank=1 scaffold_35 . exon 503560 504585 . - . ID=Physo135048.1;Parent=Physo135048;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 504739 506040 . + . ID=Physo135049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350101;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 504739 506040 . + . ID=Physo135049;Parent=Physo135049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 504739 506040 . + 0 ID=Physo135049;Parent=Physo135049;rank=1 scaffold_35 . exon 504739 506040 . + . ID=Physo135049.1;Parent=Physo135049;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 511581 513215 . + . ID=Physo135050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350102;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 511581 513215 . + . ID=Physo135050;Parent=Physo135050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 511581 511820 . + 0 ID=Physo135050;Parent=Physo135050;rank=1 scaffold_35 . exon 511581 511820 . + . ID=Physo135050.1;Parent=Physo135050;constitutive=1;rank=1 scaffold_35 . CDS 511840 512627 . + 0 ID=Physo135050;Parent=Physo135050;rank=2 scaffold_35 . exon 511840 512627 . + . ID=Physo135050.2;Parent=Physo135050;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 512771 513215 . + 0 ID=Physo135050;Parent=Physo135050;rank=3 scaffold_35 . repeat_region 513062 513093 . ? . description=trf scaffold_35 . repeat_region 513477 513484 . ? . description=dust scaffold_35 . repeat_region 513758 513765 . ? . description=dust scaffold_35 . repeat_region 515124 515131 . ? . description=dust scaffold_35 . repeat_region 515333 515341 . ? . description=dust scaffold_35 . repeat_region 515655 515731 . ? . description=trf scaffold_35 . repeat_region 515665 515748 . ? . description=trf scaffold_35 . repeat_region 515665 515748 . ? . description=trf scaffold_35 . repeat_region 515752 515802 . ? . description=trf scaffold_35 . repeat_region 515826 515868 . ? . description=trf scaffold_35 . repeat_region 520033 520078 . ? . description=trf scaffold_35 ensembl tRNA_gene 513400 513470 . - . ID=EPrPSOG00000000139;biotype=tRNA;description=tRNA-Gln for anticodon CUG [Source:TRNASCAN_SE%3BAcc:tRNA-Gln];external_name=tRNA-Gln;logic_name=ncrna_eg scaffold_35 ensembl transcript 513400 513470 . - . ID=EPrPSOT00000000139;Parent=EPrPSOG00000000139;biotype=tRNA;logic_name=ncrna_eg scaffold_35 . exon 513400 513470 . - . ID=EPrPSOE00000000139;Parent=EPrPSOT00000000139;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . exon 512771 513215 . + . ID=Physo135050.3;Parent=Physo135050;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 ensembl protein_coding_gene 520205 521158 . + . ID=Physo135051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350103;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 520205 521158 . + . ID=Physo135051;Parent=Physo135051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 520205 520301 . + 0 ID=Physo135051;Parent=Physo135051;rank=1 scaffold_35 . exon 520205 520301 . + . ID=Physo135051.1;Parent=Physo135051;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 520449 520791 . + 0 ID=Physo135051;Parent=Physo135051;rank=2 scaffold_35 . exon 520449 520791 . + . ID=Physo135051.2;Parent=Physo135051;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 520821 521033 . + 0 ID=Physo135051;Parent=Physo135051;rank=3 scaffold_35 . exon 520821 521033 . + . ID=Physo135051.3;Parent=Physo135051;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_35 . CDS 521053 521086 . + 0 ID=Physo135051;Parent=Physo135051;rank=4 scaffold_35 . exon 521053 521158 . + . ID=Physo135051.4;Parent=Physo135051;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_35 . biological_region 523016 523021 0.999 + . logic_name=eponine scaffold_35 . biological_region 523049 523052 0.999 - . logic_name=eponine scaffold_35 . biological_region 523158 523163 0.999 - . logic_name=eponine scaffold_35 . biological_region 523395 523399 0.999 - . logic_name=eponine scaffold_35 . biological_region 523398 523404 0.999 + . logic_name=eponine scaffold_35 . biological_region 523416 523420 0.999 + . logic_name=eponine scaffold_35 . biological_region 523578 523581 0.999 - . logic_name=eponine scaffold_35 . biological_region 524571 524574 0.999 - . logic_name=eponine scaffold_35 . biological_region 530363 530366 0.999 - . logic_name=eponine scaffold_35 . biological_region 530464 530464 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 523014 529346 . + . ID=Physo135052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350104;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 523014 529346 . + . ID=Physo135052;Parent=Physo135052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 523014 524872 . + 0 ID=Physo135052;Parent=Physo135052;rank=1 scaffold_35 . exon 523014 524872 . + . ID=Physo135052.1;Parent=Physo135052;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 524961 525081 . + 0 ID=Physo135052;Parent=Physo135052;rank=2 scaffold_35 . exon 524961 525081 . + . ID=Physo135052.2;Parent=Physo135052;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 525366 525650 . + 0 ID=Physo135052;Parent=Physo135052;rank=3 scaffold_35 . exon 525366 525650 . + . ID=Physo135052.3;Parent=Physo135052;constitutive=1;rank=3 scaffold_35 . CDS 525750 525948 . + 0 ID=Physo135052;Parent=Physo135052;rank=4 scaffold_35 . exon 525750 525948 . + . ID=Physo135052.4;Parent=Physo135052;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_35 . CDS 525986 526023 . + 0 ID=Physo135052;Parent=Physo135052;rank=5 scaffold_35 . exon 525986 526023 . + . ID=Physo135052.5;Parent=Physo135052;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 . CDS 526656 527096 . + 0 ID=Physo135052;Parent=Physo135052;rank=6 scaffold_35 . exon 526656 527096 . + . ID=Physo135052.6;Parent=Physo135052;constitutive=1;rank=6 scaffold_35 . CDS 527145 529346 . + 0 ID=Physo135052;Parent=Physo135052;rank=7 scaffold_35 . exon 527145 529346 . + . ID=Physo135052.7;Parent=Physo135052;constitutive=1;rank=7 scaffold_35 ensembl protein_coding_gene 529489 535284 . - . ID=Physo135053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350105;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 529489 535284 . - . ID=Physo135053;Parent=Physo135053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 529489 535284 . - 0 ID=Physo135053;Parent=Physo135053;rank=1 scaffold_35 . exon 529489 535284 . - . ID=Physo135053.1;Parent=Physo135053;constitutive=1;rank=1 scaffold_35 . biological_region 545996 545998 0.999 + . logic_name=eponine scaffold_35 . repeat_region 547291 547308 . ? . description=dust scaffold_35 . biological_region 548116 548119 0.999 - . logic_name=eponine scaffold_35 . biological_region 550870 550874 0.999 - . logic_name=eponine scaffold_35 . biological_region 551353 551357 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 543428 545189 . - . ID=Physo135054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350106;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 543428 545189 . - . ID=Physo135054;Parent=Physo135054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 543428 543971 . - 0 ID=Physo135054;Parent=Physo135054;rank=5 scaffold_35 . exon 543428 543971 . - . ID=Physo135054.5;Parent=Physo135054;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 544049 544254 . - 0 ID=Physo135054;Parent=Physo135054;rank=4 scaffold_35 . exon 544049 544254 . - . ID=Physo135054.4;Parent=Physo135054;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 544324 544387 . - 0 ID=Physo135054;Parent=Physo135054;rank=3 scaffold_35 . exon 544324 544387 . - . ID=Physo135054.3;Parent=Physo135054;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 544454 544729 . - 0 ID=Physo135054;Parent=Physo135054;rank=2 scaffold_35 . exon 544454 544729 . - . ID=Physo135054.2;Parent=Physo135054;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 544819 545189 . - 0 ID=Physo135054;Parent=Physo135054;rank=1 scaffold_35 . exon 544819 545189 . - . ID=Physo135054.1;Parent=Physo135054;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 545422 548163 . - . ID=Physo135055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350107;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 545422 548163 . - . ID=Physo135055;Parent=Physo135055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 545422 546154 . - . ID=Physo135055.8;Parent=Physo135055;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=8 scaffold_35 . CDS 545554 546154 . - 0 ID=Physo135055;Parent=Physo135055;rank=8 scaffold_35 . CDS 546295 546420 . - 0 ID=Physo135055;Parent=Physo135055;rank=7 scaffold_35 . exon 546295 546420 . - . ID=Physo135055.7;Parent=Physo135055;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_35 . CDS 546930 547285 . - 0 ID=Physo135055;Parent=Physo135055;rank=6 scaffold_35 . exon 546930 547285 . - . ID=Physo135055.6;Parent=Physo135055;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_35 . CDS 547370 547471 . - 0 ID=Physo135055;Parent=Physo135055;rank=5 scaffold_35 . exon 547370 547471 . - . ID=Physo135055.5;Parent=Physo135055;constitutive=1;rank=5 scaffold_35 . CDS 547497 547685 . - 0 ID=Physo135055;Parent=Physo135055;rank=4 scaffold_35 . exon 547497 547685 . - . ID=Physo135055.4;Parent=Physo135055;constitutive=1;rank=4 scaffold_35 . CDS 547724 547755 . - 0 ID=Physo135055;Parent=Physo135055;rank=3 scaffold_35 . exon 547724 547755 . - . ID=Physo135055.3;Parent=Physo135055;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 547870 547939 . - 0 ID=Physo135055;Parent=Physo135055;rank=2 scaffold_35 . exon 547870 547939 . - . ID=Physo135055.2;Parent=Physo135055;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 548014 548163 . - 0 ID=Physo135055;Parent=Physo135055;rank=1 scaffold_35 . exon 548014 548163 . - . ID=Physo135055.1;Parent=Physo135055;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 548583 550110 . + . ID=Physo135056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350108;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 548583 550110 . + . ID=Physo135056;Parent=Physo135056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 548583 549088 . + 0 ID=Physo135056;Parent=Physo135056;rank=1 scaffold_35 . exon 548583 549088 . + . ID=Physo135056.1;Parent=Physo135056;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 549156 549219 . + 0 ID=Physo135056;Parent=Physo135056;rank=2 scaffold_35 . exon 549156 549219 . + . ID=Physo135056.2;Parent=Physo135056;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 549345 549496 . + 0 ID=Physo135056;Parent=Physo135056;rank=3 scaffold_35 . exon 549345 549496 . + . ID=Physo135056.3;Parent=Physo135056;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 549567 550110 . + 0 ID=Physo135056;Parent=Physo135056;rank=4 scaffold_35 . exon 549567 550110 . + . ID=Physo135056.4;Parent=Physo135056;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 ensembl protein_coding_gene 550243 551999 . + . ID=Physo135057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350109;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 550243 551999 . + . ID=Physo135057;Parent=Physo135057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 550243 550598 . + 0 ID=Physo135057;Parent=Physo135057;rank=1 scaffold_35 . exon 550243 550598 . + . ID=Physo135057.1;Parent=Physo135057;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 . CDS 550671 550693 . + 0 ID=Physo135057;Parent=Physo135057;rank=2 scaffold_35 . exon 550671 550693 . + . ID=Physo135057.2;Parent=Physo135057;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 550859 550946 . + 0 ID=Physo135057;Parent=Physo135057;rank=3 scaffold_35 . exon 550859 550946 . + . ID=Physo135057.3;Parent=Physo135057;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_35 . CDS 551025 551088 . + 0 ID=Physo135057;Parent=Physo135057;rank=4 scaffold_35 . exon 551025 551088 . + . ID=Physo135057.4;Parent=Physo135057;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 551155 551357 . + 0 ID=Physo135057;Parent=Physo135057;rank=5 scaffold_35 . exon 551155 551357 . + . ID=Physo135057.5;Parent=Physo135057;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 551429 551999 . + 0 ID=Physo135057;Parent=Physo135057;rank=6 scaffold_35 . exon 551429 551999 . + . ID=Physo135057.6;Parent=Physo135057;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 ensembl protein_coding_gene 552136 553143 . + . ID=Physo135058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350110;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 552136 553143 . + . ID=Physo135058;Parent=Physo135058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 552136 553143 . + 0 ID=Physo135058;Parent=Physo135058;rank=1 scaffold_35 . exon 552136 553143 . + . ID=Physo135058.1;Parent=Physo135058;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 557334 561836 . - . ID=Physo135061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350113;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 557334 561836 . - . ID=Physo135061;Parent=Physo135061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 557334 557507 . - 0 ID=Physo135061;Parent=Physo135061;rank=10 scaffold_35 . exon 557334 557507 . - . ID=Physo135061.10;Parent=Physo135061;constitutive=1;rank=10 scaffold_35 . CDS 557651 557666 . - 0 ID=Physo135061;Parent=Physo135061;rank=9 scaffold_35 . exon 557651 557666 . - . ID=Physo135061.9;Parent=Physo135061;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 557991 558232 . - 0 ID=Physo135061;Parent=Physo135061;rank=8 scaffold_35 . exon 557991 558232 . - . ID=Physo135061.8;Parent=Physo135061;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_35 . CDS 558343 559193 . - 0 ID=Physo135061;Parent=Physo135061;rank=7 scaffold_35 . exon 558343 559193 . - . ID=Physo135061.7;Parent=Physo135061;constitutive=1;ensembl_phase=1;rank=7 scaffold_35 . CDS 559280 560538 . - 0 ID=Physo135061;Parent=Physo135061;rank=6 scaffold_35 . exon 559280 560538 . - . ID=Physo135061.6;Parent=Physo135061;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_35 . CDS 560803 560837 . - 0 ID=Physo135061;Parent=Physo135061;rank=5 scaffold_35 . exon 560803 560837 . - . ID=Physo135061.5;Parent=Physo135061;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 560882 561056 . - 0 ID=Physo135061;Parent=Physo135061;rank=4 scaffold_35 . exon 560882 561056 . - . ID=Physo135061.4;Parent=Physo135061;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 561147 561487 . - 0 ID=Physo135061;Parent=Physo135061;rank=3 scaffold_35 . exon 561147 561487 . - . ID=Physo135061.3;Parent=Physo135061;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_35 . CDS 561576 561631 . - 0 ID=Physo135061;Parent=Physo135061;rank=2 scaffold_35 . exon 561576 561631 . - . ID=Physo135061.2;Parent=Physo135061;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 561717 561819 . - 0 ID=Physo135061;Parent=Physo135061;rank=1 scaffold_35 . exon 561717 561836 . - . ID=Physo135061.1;Parent=Physo135061;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_35 ensembl protein_coding_gene 553976 554443 . + . ID=Physo157139;biotype=protein_coding;external_name=C_scaffold_35000031;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 553976 554443 . + . ID=Physo157139;Parent=Physo157139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 553976 554443 . + 0 ID=Physo157139;Parent=Physo157139;rank=1 scaffold_35 . exon 553976 554443 . + . ID=Physo157139.1;Parent=Physo157139;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 554950 557251 . + . ID=Physo157140;biotype=protein_coding;external_name=C_scaffold_35000032;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 554950 557251 . + . ID=Physo157140;Parent=Physo157140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 554950 555258 . + 0 ID=Physo157140;Parent=Physo157140;rank=1 scaffold_35 . exon 554950 555258 . + . ID=Physo157140.1;Parent=Physo157140;constitutive=1;rank=1 scaffold_35 . CDS 555316 555850 . + 0 ID=Physo157140;Parent=Physo157140;rank=2 scaffold_35 . exon 555316 555850 . + . ID=Physo157140.2;Parent=Physo157140;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 555984 556550 . + 0 ID=Physo157140;Parent=Physo157140;rank=3 scaffold_35 . exon 555984 556550 . + . ID=Physo157140.3;Parent=Physo157140;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 556772 556862 . + 0 ID=Physo157140;Parent=Physo157140;rank=4 scaffold_35 . exon 556772 556862 . + . ID=Physo157140.4;Parent=Physo157140;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_35 . CDS 556963 557251 . + 0 ID=Physo157140;Parent=Physo157140;rank=5 scaffold_35 . exon 556963 557251 . + . ID=Physo157140.5;Parent=Physo157140;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . biological_region 567232 567232 0.999 - . logic_name=eponine scaffold_35 ensembl protein_coding_gene 564926 568068 . - . ID=Physo135063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350115;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 564926 568068 . - . ID=Physo135063;Parent=Physo135063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 564926 565388 . - 0 ID=Physo135063;Parent=Physo135063;rank=3 scaffold_35 . exon 564926 565388 . - . ID=Physo135063.3;Parent=Physo135063;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 565476 565679 . - 0 ID=Physo135063;Parent=Physo135063;rank=2 scaffold_35 . exon 565476 565679 . - . ID=Physo135063.2;Parent=Physo135063;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_35 . CDS 565952 568068 . - 0 ID=Physo135063;Parent=Physo135063;rank=1 scaffold_35 . exon 565952 568068 . - . ID=Physo135063.1;Parent=Physo135063;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 569811 570311 . - . ID=Physo135064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350116;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 569811 570311 . - . ID=Physo135064;Parent=Physo135064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 569811 569851 . - 0 ID=Physo135064;Parent=Physo135064;rank=3 scaffold_35 . exon 569811 569851 . - . ID=Physo135064.3;Parent=Physo135064;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 569914 569977 . - 0 ID=Physo135064;Parent=Physo135064;rank=2 scaffold_35 . exon 569914 569977 . - . ID=Physo135064.2;Parent=Physo135064;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 570024 570311 . - 0 ID=Physo135064;Parent=Physo135064;rank=1 scaffold_35 . exon 570024 570311 . - . ID=Physo135064.1;Parent=Physo135064;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 570830 571918 . + . ID=Physo135065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350117;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 570830 571918 . + . ID=Physo135065;Parent=Physo135065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 570830 571918 . + 0 ID=Physo135065;Parent=Physo135065;rank=1 scaffold_35 . exon 570830 571918 . + . ID=Physo135065.1;Parent=Physo135065;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 562255 564802 . + . ID=Physo157146;biotype=protein_coding;external_name=C_scaffold_35000038;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 562255 564802 . + . ID=Physo157146;Parent=Physo157146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 562255 562450 . + 0 ID=Physo157146;Parent=Physo157146;rank=1 scaffold_35 . exon 562255 562450 . + . ID=Physo157146.1;Parent=Physo157146;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 562748 562905 . + 0 ID=Physo157146;Parent=Physo157146;rank=2 scaffold_35 . exon 562748 562905 . + . ID=Physo157146.2;Parent=Physo157146;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 563008 563085 . + 0 ID=Physo157146;Parent=Physo157146;rank=3 scaffold_35 . exon 563008 563085 . + . ID=Physo157146.3;Parent=Physo157146;constitutive=1;rank=3 scaffold_35 . CDS 563170 563448 . + 0 ID=Physo157146;Parent=Physo157146;rank=4 scaffold_35 . exon 563170 563448 . + . ID=Physo157146.4;Parent=Physo157146;constitutive=1;rank=4 scaffold_35 . CDS 563806 563936 . + 0 ID=Physo157146;Parent=Physo157146;rank=5 scaffold_35 . exon 563806 563936 . + . ID=Physo157146.5;Parent=Physo157146;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 564007 564802 . + 0 ID=Physo157146;Parent=Physo157146;rank=6 scaffold_35 . exon 564007 564802 . + . ID=Physo157146.6;Parent=Physo157146;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . repeat_region 574608 574615 . ? . description=dust scaffold_35 . repeat_region 577301 577348 . ? . description=dust scaffold_35 ensembl protein_coding_gene 579870 582535 . - . ID=Physo108844;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350012;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 579870 582535 . - . ID=Physo108844;Parent=Physo108844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 579870 580070 . - 0 ID=Physo108844;Parent=Physo108844;rank=16 scaffold_35 . exon 579870 580070 . - . ID=Physo108844.16;Parent=Physo108844;constitutive=1;rank=16 scaffold_35 . CDS 580145 580216 . - 0 ID=Physo108844;Parent=Physo108844;rank=15 scaffold_35 . exon 580145 580216 . - . ID=Physo108844.15;Parent=Physo108844;constitutive=1;rank=15 scaffold_35 . CDS 580291 580407 . - 0 ID=Physo108844;Parent=Physo108844;rank=14 scaffold_35 . exon 580291 580407 . - . ID=Physo108844.14;Parent=Physo108844;constitutive=1;rank=14 scaffold_35 . CDS 580471 580520 . - 0 ID=Physo108844;Parent=Physo108844;rank=13 scaffold_35 . exon 580471 580520 . - . ID=Physo108844.13;Parent=Physo108844;constitutive=1;ensembl_phase=1;rank=13 scaffold_35 . CDS 580597 580699 . - 0 ID=Physo108844;Parent=Physo108844;rank=12 scaffold_35 . exon 580597 580699 . - . ID=Physo108844.12;Parent=Physo108844;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_35 . CDS 580771 580887 . - 0 ID=Physo108844;Parent=Physo108844;rank=11 scaffold_35 . exon 580771 580887 . - . ID=Physo108844.11;Parent=Physo108844;constitutive=1;rank=11 scaffold_35 . CDS 580950 581318 . - 0 ID=Physo108844;Parent=Physo108844;rank=10 scaffold_35 . exon 580950 581318 . - . ID=Physo108844.10;Parent=Physo108844;constitutive=1;rank=10 scaffold_35 . CDS 581377 581447 . - 0 ID=Physo108844;Parent=Physo108844;rank=9 scaffold_35 . exon 581377 581447 . - . ID=Physo108844.9;Parent=Physo108844;constitutive=1;ensembl_phase=1;rank=9 scaffold_35 . CDS 581526 581557 . - 0 ID=Physo108844;Parent=Physo108844;rank=8 scaffold_35 . exon 581526 581557 . - . ID=Physo108844.8;Parent=Physo108844;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_35 . CDS 581629 581675 . - 0 ID=Physo108844;Parent=Physo108844;rank=7 scaffold_35 . CDS 581743 581778 . - 0 ID=Physo108844;Parent=Physo108844;rank=6 scaffold_35 . CDS 581851 581906 . - 0 ID=Physo108844;Parent=Physo108844;rank=5 scaffold_35 . CDS 581980 582072 . - 0 ID=Physo108844;Parent=Physo108844;rank=4 scaffold_35 . CDS 582138 582303 . - 0 ID=Physo108844;Parent=Physo108844;rank=3 scaffold_35 . CDS 582379 582439 . - 0 ID=Physo108844;Parent=Physo108844;rank=2 scaffold_35 . CDS 582501 582535 . - 0 ID=Physo108844;Parent=Physo108844;rank=1 scaffold_35 ensembl protein_coding_gene 572025 573002 . - . ID=Physo135066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350118;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 572025 573002 . - . ID=Physo135066;Parent=Physo135066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 572025 573002 . - 0 ID=Physo135066;Parent=Physo135066;rank=1 scaffold_35 . exon 572025 573002 . - . ID=Physo135066.1;Parent=Physo135066;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 573183 575862 . + . ID=Physo135067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350119;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 573183 575862 . + . ID=Physo135067;Parent=Physo135067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 573183 574023 . + 0 ID=Physo135067;Parent=Physo135067;rank=1 scaffold_35 . exon 573183 574023 . + . ID=Physo135067.1;Parent=Physo135067;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 574057 574258 . + 0 ID=Physo135067;Parent=Physo135067;rank=2 scaffold_35 . exon 574057 574258 . + . ID=Physo135067.2;Parent=Physo135067;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 574426 574486 . + 0 ID=Physo135067;Parent=Physo135067;rank=3 scaffold_35 . exon 574426 574486 . + . ID=Physo135067.3;Parent=Physo135067;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 . CDS 574551 574589 . + 0 ID=Physo135067;Parent=Physo135067;rank=4 scaffold_35 . exon 574551 574589 . + . ID=Physo135067.4;Parent=Physo135067;constitutive=1;rank=4 scaffold_35 . CDS 574657 575862 . + 0 ID=Physo135067;Parent=Physo135067;rank=5 scaffold_35 . exon 574657 575862 . + . ID=Physo135067.5;Parent=Physo135067;constitutive=1;rank=5 scaffold_35 ensembl protein_coding_gene 577361 579881 . + . ID=Physo135068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350120;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 577361 579881 . + . ID=Physo135068;Parent=Physo135068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 577361 579802 . + 0 ID=Physo135068;Parent=Physo135068;rank=1 scaffold_35 . exon 577361 579881 . + . ID=Physo135068.1;Parent=Physo135068;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_35 . repeat_region 581823 581856 . ? . description=trf scaffold_35 . biological_region 585035 585039 0.999 + . logic_name=eponine scaffold_35 . biological_region 585074 585079 0.999 - . logic_name=eponine scaffold_35 . biological_region 585478 585484 0.999 + . logic_name=eponine scaffold_35 . biological_region 585501 585504 0.999 + . logic_name=eponine scaffold_35 . biological_region 586569 586572 0.999 + . logic_name=eponine scaffold_35 . biological_region 589100 589100 0.999 - . logic_name=eponine scaffold_35 . biological_region 589207 589211 0.999 - . logic_name=eponine scaffold_35 . biological_region 589227 589231 0.999 - . logic_name=eponine scaffold_35 . exon 581629 581675 . - . ID=Physo108844.7;Parent=Physo108844;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_35 . exon 581743 581778 . - . ID=Physo108844.6;Parent=Physo108844;constitutive=1;rank=6 scaffold_35 . exon 581851 581906 . - . ID=Physo108844.5;Parent=Physo108844;constitutive=1;ensembl_phase=1;rank=5 scaffold_35 . exon 581980 582072 . - . ID=Physo108844.4;Parent=Physo108844;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_35 . exon 582138 582303 . - . ID=Physo108844.3;Parent=Physo108844;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_35 . exon 582379 582439 . - . ID=Physo108844.2;Parent=Physo108844;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . exon 582501 582535 . - . ID=Physo108844.1;Parent=Physo108844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_35 ensembl protein_coding_gene 585771 587551 . + . ID=Physo116661;biotype=protein_coding;external_name=estExt_Genewise1.C_350041;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 585771 587551 . + . ID=Physo116661;Parent=Physo116661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 585771 585870 . + . ID=Physo116661.1;Parent=Physo116661;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_35 . CDS 585864 585870 . + 0 ID=Physo116661;Parent=Physo116661;rank=1 scaffold_35 . CDS 585942 586141 . + 0 ID=Physo116661;Parent=Physo116661;rank=2 scaffold_35 . exon 585942 586141 . + . ID=Physo116661.2;Parent=Physo116661;constitutive=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 586226 586451 . + 0 ID=Physo116661;Parent=Physo116661;rank=3 scaffold_35 . exon 586226 586451 . + . ID=Physo116661.3;Parent=Physo116661;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_35 . CDS 586530 587298 . + 0 ID=Physo116661;Parent=Physo116661;rank=4 scaffold_35 . exon 586530 587298 . + . ID=Physo116661.4;Parent=Physo116661;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_35 . CDS 587374 587551 . + 0 ID=Physo116661;Parent=Physo116661;rank=5 scaffold_35 . exon 587374 587551 . + . ID=Physo116661.5;Parent=Physo116661;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 ensembl protein_coding_gene 583417 585133 . - . ID=Physo135070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350122;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 583417 585133 . - . ID=Physo135070;Parent=Physo135070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 583417 584391 . - 0 ID=Physo135070;Parent=Physo135070;rank=4 scaffold_35 . exon 583417 584391 . - . ID=Physo135070.4;Parent=Physo135070;constitutive=1;rank=4 scaffold_35 . CDS 584486 584623 . - 0 ID=Physo135070;Parent=Physo135070;rank=3 scaffold_35 . exon 584486 584623 . - . ID=Physo135070.3;Parent=Physo135070;constitutive=1;rank=3 scaffold_35 . CDS 584708 584854 . - 0 ID=Physo135070;Parent=Physo135070;rank=2 scaffold_35 . exon 584708 584854 . - . ID=Physo135070.2;Parent=Physo135070;constitutive=1;rank=2 scaffold_35 . CDS 584933 585133 . - 0 ID=Physo135070;Parent=Physo135070;rank=1 scaffold_35 . exon 584933 585133 . - . ID=Physo135070.1;Parent=Physo135070;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 589364 593931 . + . ID=Physo157151;biotype=protein_coding;external_name=C_scaffold_35000043;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 589364 593931 . + . ID=Physo157151;Parent=Physo157151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 589364 589546 . + 0 ID=Physo157151;Parent=Physo157151;rank=1 scaffold_35 . exon 589364 589546 . + . ID=Physo157151.1;Parent=Physo157151;constitutive=1;rank=1 scaffold_35 . CDS 589631 590002 . + 0 ID=Physo157151;Parent=Physo157151;rank=2 scaffold_35 . exon 589631 590002 . + . ID=Physo157151.2;Parent=Physo157151;constitutive=1;rank=2 scaffold_35 . CDS 590089 590193 . + 0 ID=Physo157151;Parent=Physo157151;rank=3 scaffold_35 . exon 590089 590193 . + . ID=Physo157151.3;Parent=Physo157151;constitutive=1;rank=3 scaffold_35 . CDS 590277 590381 . + 0 ID=Physo157151;Parent=Physo157151;rank=4 scaffold_35 . exon 590277 590381 . + . ID=Physo157151.4;Parent=Physo157151;constitutive=1;rank=4 scaffold_35 . CDS 590450 590529 . + 0 ID=Physo157151;Parent=Physo157151;rank=5 scaffold_35 . exon 590450 590529 . + . ID=Physo157151.5;Parent=Physo157151;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 590595 590658 . + 0 ID=Physo157151;Parent=Physo157151;rank=6 scaffold_35 . exon 590595 590658 . + . ID=Physo157151.6;Parent=Physo157151;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . CDS 590730 590843 . + 0 ID=Physo157151;Parent=Physo157151;rank=7 scaffold_35 . exon 590730 590843 . + . ID=Physo157151.7;Parent=Physo157151;constitutive=1;rank=7 scaffold_35 . CDS 590943 591035 . + 0 ID=Physo157151;Parent=Physo157151;rank=8 scaffold_35 . exon 590943 591035 . + . ID=Physo157151.8;Parent=Physo157151;constitutive=1;rank=8 scaffold_35 . CDS 591113 591337 . + 0 ID=Physo157151;Parent=Physo157151;rank=9 scaffold_35 . exon 591113 591337 . + . ID=Physo157151.9;Parent=Physo157151;constitutive=1;rank=9 scaffold_35 . CDS 591428 591456 . + 0 ID=Physo157151;Parent=Physo157151;rank=10 scaffold_35 . exon 591428 591456 . + . ID=Physo157151.10;Parent=Physo157151;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_35 . CDS 591622 591688 . + 0 ID=Physo157151;Parent=Physo157151;rank=11 scaffold_35 . CDS 591766 591949 . + 0 ID=Physo157151;Parent=Physo157151;rank=12 scaffold_35 . CDS 592033 592187 . + 0 ID=Physo157151;Parent=Physo157151;rank=13 scaffold_35 . CDS 592267 592431 . + 0 ID=Physo157151;Parent=Physo157151;rank=14 scaffold_35 . CDS 592500 592555 . + 0 ID=Physo157151;Parent=Physo157151;rank=15 scaffold_35 . CDS 592658 592771 . + 0 ID=Physo157151;Parent=Physo157151;rank=16 scaffold_35 . CDS 592831 593149 . + 0 ID=Physo157151;Parent=Physo157151;rank=17 scaffold_35 . CDS 593227 593340 . + 0 ID=Physo157151;Parent=Physo157151;rank=18 scaffold_35 . CDS 593410 593499 . + 0 ID=Physo157151;Parent=Physo157151;rank=19 scaffold_35 . CDS 593569 593931 . + 0 ID=Physo157151;Parent=Physo157151;rank=20 scaffold_35 . repeat_region 597014 597033 . ? . description=dust scaffold_35 . exon 591622 591688 . + . ID=Physo157151.11;Parent=Physo157151;constitutive=1;ensembl_phase=2;rank=11 scaffold_35 . exon 591766 591949 . + . ID=Physo157151.12;Parent=Physo157151;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_35 . exon 592033 592187 . + . ID=Physo157151.13;Parent=Physo157151;constitutive=1;ensembl_phase=1;rank=13 scaffold_35 . exon 592267 592431 . + . ID=Physo157151.14;Parent=Physo157151;constitutive=1;rank=14 scaffold_35 . exon 592500 592555 . + . ID=Physo157151.15;Parent=Physo157151;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_35 . exon 592658 592771 . + . ID=Physo157151.16;Parent=Physo157151;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=16 scaffold_35 . exon 592831 593149 . + . ID=Physo157151.17;Parent=Physo157151;constitutive=1;ensembl_phase=2;rank=17 scaffold_35 . exon 593227 593340 . + . ID=Physo157151.18;Parent=Physo157151;constitutive=1;rank=18 scaffold_35 . exon 593410 593499 . + . ID=Physo157151.19;Parent=Physo157151;constitutive=1;rank=19 scaffold_35 . exon 593569 593931 . + . ID=Physo157151.20;Parent=Physo157151;constitutive=1;rank=20 scaffold_35 ensembl protein_coding_gene 594108 596957 . - . ID=Physo157152;biotype=protein_coding;external_name=C_scaffold_35000044;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 594108 596957 . - . ID=Physo157152;Parent=Physo157152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 594108 594345 . - 0 ID=Physo157152;Parent=Physo157152;rank=9 scaffold_35 . exon 594108 594345 . - . ID=Physo157152.9;Parent=Physo157152;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 594446 594620 . - 0 ID=Physo157152;Parent=Physo157152;rank=8 scaffold_35 . exon 594446 594620 . - . ID=Physo157152.8;Parent=Physo157152;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_35 . CDS 594658 594760 . - 0 ID=Physo157152;Parent=Physo157152;rank=7 scaffold_35 . exon 594658 594760 . - . ID=Physo157152.7;Parent=Physo157152;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_35 . CDS 594854 595118 . - 0 ID=Physo157152;Parent=Physo157152;rank=6 scaffold_35 . exon 594854 595118 . - . ID=Physo157152.6;Parent=Physo157152;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . CDS 595181 595523 . - 0 ID=Physo157152;Parent=Physo157152;rank=5 scaffold_35 . exon 595181 595523 . - . ID=Physo157152.5;Parent=Physo157152;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_35 . CDS 595551 596439 . - 0 ID=Physo157152;Parent=Physo157152;rank=4 scaffold_35 . exon 595551 596439 . - . ID=Physo157152.4;Parent=Physo157152;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_35 . CDS 596531 596598 . - 0 ID=Physo157152;Parent=Physo157152;rank=3 scaffold_35 . exon 596531 596598 . - . ID=Physo157152.3;Parent=Physo157152;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 596692 596767 . - 0 ID=Physo157152;Parent=Physo157152;rank=2 scaffold_35 . exon 596692 596767 . - . ID=Physo157152.2;Parent=Physo157152;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 596848 596955 . - 0 ID=Physo157152;Parent=Physo157152;rank=1 scaffold_35 . exon 596848 596957 . - . ID=Physo157152.1;Parent=Physo157152;constitutive=1;ensembl_phase=-1;rank=1 scaffold_35 . repeat_region 604827 604869 . ? . description=trf scaffold_35 . biological_region 605873 605876 0.999 + . logic_name=eponine scaffold_35 . repeat_region 606186 606224 . ? . description=trf scaffold_35 . repeat_region 606186 606224 . ? . description=trf scaffold_35 . repeat_region 606295 606349 . ? . description=trf scaffold_35 . biological_region 610970 610975 0.999 - . logic_name=eponine scaffold_35 . biological_region 611025 611027 0.999 + . logic_name=eponine scaffold_35 ensembl protein_coding_gene 604655 606529 . - . ID=Physo135076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350128;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 604655 606529 . - . ID=Physo135076;Parent=Physo135076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 604655 606511 . - 0 ID=Physo135076;Parent=Physo135076;rank=1 scaffold_35 . exon 604655 606529 . - . ID=Physo135076.1;Parent=Physo135076;constitutive=1;ensembl_phase=-1;rank=1 scaffold_35 ensembl protein_coding_gene 609844 611607 . - . ID=Physo135078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350130;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 609844 611607 . - . ID=Physo135078;Parent=Physo135078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 609844 611607 . - 0 ID=Physo135078;Parent=Physo135078;rank=1 scaffold_35 . exon 609844 611607 . - . ID=Physo135078.1;Parent=Physo135078;constitutive=1;rank=1 scaffold_35 ensembl protein_coding_gene 602953 604562 . + . ID=Physo157153;biotype=protein_coding;external_name=C_scaffold_35000045;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 602953 604562 . + . ID=Physo157153;Parent=Physo157153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 602953 603126 . + 0 ID=Physo157153;Parent=Physo157153;rank=1 scaffold_35 . exon 602953 603126 . + . ID=Physo157153.1;Parent=Physo157153;constitutive=1;rank=1 scaffold_35 . CDS 603199 603377 . + 0 ID=Physo157153;Parent=Physo157153;rank=2 scaffold_35 . exon 603199 603377 . + . ID=Physo157153.2;Parent=Physo157153;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_35 . CDS 603450 603773 . + 0 ID=Physo157153;Parent=Physo157153;rank=3 scaffold_35 . exon 603450 603773 . + . ID=Physo157153.3;Parent=Physo157153;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_35 . CDS 603852 604053 . + 0 ID=Physo157153;Parent=Physo157153;rank=4 scaffold_35 . exon 603852 604053 . + . ID=Physo157153.4;Parent=Physo157153;constitutive=1;ensembl_phase=2;rank=4 scaffold_35 . CDS 604119 604362 . + 0 ID=Physo157153;Parent=Physo157153;rank=5 scaffold_35 . exon 604119 604362 . + . ID=Physo157153.5;Parent=Physo157153;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_35 . CDS 604444 604562 . + 0 ID=Physo157153;Parent=Physo157153;rank=6 scaffold_35 . exon 604444 604562 . + . ID=Physo157153.6;Parent=Physo157153;constitutive=1;ensembl_phase=1;rank=6 scaffold_35 ensembl protein_coding_gene 606987 609629 . + . ID=Physo157157;biotype=protein_coding;external_name=C_scaffold_35000049;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 606987 609629 . + . ID=Physo157157;Parent=Physo157157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 606987 607022 . + 0 ID=Physo157157;Parent=Physo157157;rank=1 scaffold_35 . exon 606987 607022 . + . ID=Physo157157.1;Parent=Physo157157;constitutive=1;rank=1 scaffold_35 . CDS 607092 607370 . + 0 ID=Physo157157;Parent=Physo157157;rank=2 scaffold_35 . exon 607092 607370 . + . ID=Physo157157.2;Parent=Physo157157;constitutive=1;rank=2 scaffold_35 . CDS 607438 607617 . + 0 ID=Physo157157;Parent=Physo157157;rank=3 scaffold_35 . exon 607438 607617 . + . ID=Physo157157.3;Parent=Physo157157;constitutive=1;rank=3 scaffold_35 . CDS 607726 607979 . + 0 ID=Physo157157;Parent=Physo157157;rank=4 scaffold_35 . exon 607726 607979 . + . ID=Physo157157.4;Parent=Physo157157;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_35 . CDS 608044 608092 . + 0 ID=Physo157157;Parent=Physo157157;rank=5 scaffold_35 . exon 608044 608092 . + . ID=Physo157157.5;Parent=Physo157157;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 . CDS 608158 608340 . + 0 ID=Physo157157;Parent=Physo157157;rank=6 scaffold_35 . exon 608158 608340 . + . ID=Physo157157.6;Parent=Physo157157;constitutive=1;rank=6 scaffold_35 . CDS 608420 608578 . + 0 ID=Physo157157;Parent=Physo157157;rank=7 scaffold_35 . exon 608420 608578 . + . ID=Physo157157.7;Parent=Physo157157;constitutive=1;rank=7 scaffold_35 . CDS 608647 608735 . + 0 ID=Physo157157;Parent=Physo157157;rank=8 scaffold_35 . exon 608647 608735 . + . ID=Physo157157.8;Parent=Physo157157;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_35 . CDS 608810 608867 . + 0 ID=Physo157157;Parent=Physo157157;rank=9 scaffold_35 . exon 608810 608867 . + . ID=Physo157157.9;Parent=Physo157157;constitutive=1;ensembl_phase=2;rank=9 scaffold_35 . CDS 609089 609199 . + 0 ID=Physo157157;Parent=Physo157157;rank=10 scaffold_35 . exon 609089 609199 . + . ID=Physo157157.10;Parent=Physo157157;constitutive=1;rank=10 scaffold_35 . CDS 609279 609503 . + 0 ID=Physo157157;Parent=Physo157157;rank=11 scaffold_35 . exon 609279 609503 . + . ID=Physo157157.11;Parent=Physo157157;constitutive=1;rank=11 scaffold_35 . CDS 609591 609629 . + 0 ID=Physo157157;Parent=Physo157157;rank=12 scaffold_35 . exon 609591 609629 . + . ID=Physo157157.12;Parent=Physo157157;constitutive=1;rank=12 scaffold_35 . repeat_region 617873 617885 . ? . description=dust scaffold_35 . repeat_region 618172 618182 . ? . description=dust scaffold_35 ensembl protein_coding_gene 616415 617627 . + . ID=Physo108846;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_350014;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 616415 617627 . + . ID=Physo108846;Parent=Physo108846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 616415 616472 . + 0 ID=Physo108846;Parent=Physo108846;rank=1 scaffold_35 . exon 616415 616472 . + . ID=Physo108846.1;Parent=Physo108846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 616552 616794 . + 0 ID=Physo108846;Parent=Physo108846;rank=2 scaffold_35 . exon 616552 616794 . + . ID=Physo108846.2;Parent=Physo108846;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_35 . CDS 616879 616976 . + 0 ID=Physo108846;Parent=Physo108846;rank=3 scaffold_35 . exon 616879 616976 . + . ID=Physo108846.3;Parent=Physo108846;constitutive=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 617055 617126 . + 0 ID=Physo108846;Parent=Physo108846;rank=4 scaffold_35 . exon 617055 617126 . + . ID=Physo108846.4;Parent=Physo108846;constitutive=1;rank=4 scaffold_35 . CDS 617206 617305 . + 0 ID=Physo108846;Parent=Physo108846;rank=5 scaffold_35 . exon 617206 617305 . + . ID=Physo108846.5;Parent=Physo108846;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_35 . CDS 617419 617627 . + 0 ID=Physo108846;Parent=Physo108846;rank=6 scaffold_35 . exon 617419 617627 . + . ID=Physo108846.6;Parent=Physo108846;constitutive=1;ensembl_phase=1;rank=6 scaffold_35 ensembl protein_coding_gene 613071 615738 . + . ID=Physo135079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350131;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 613071 615738 . + . ID=Physo135079;Parent=Physo135079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 613071 613232 . + 0 ID=Physo135079;Parent=Physo135079;rank=1 scaffold_35 . exon 613071 613232 . + . ID=Physo135079.1;Parent=Physo135079;constitutive=1;rank=1 scaffold_35 . CDS 613311 613389 . + 0 ID=Physo135079;Parent=Physo135079;rank=2 scaffold_35 . exon 613311 613389 . + . ID=Physo135079.2;Parent=Physo135079;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_35 . CDS 613470 613832 . + 0 ID=Physo135079;Parent=Physo135079;rank=3 scaffold_35 . exon 613470 613832 . + . ID=Physo135079.3;Parent=Physo135079;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_35 . CDS 613904 614237 . + 0 ID=Physo135079;Parent=Physo135079;rank=4 scaffold_35 . exon 613904 614237 . + . ID=Physo135079.4;Parent=Physo135079;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_35 . CDS 614472 615738 . + 0 ID=Physo135079;Parent=Physo135079;rank=5 scaffold_35 . exon 614472 615738 . + . ID=Physo135079.5;Parent=Physo135079;constitutive=1;ensembl_phase=2;rank=5 scaffold_35 ensembl protein_coding_gene 618710 621733 . + . ID=Physo135081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350133;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 618710 621733 . + . ID=Physo135081;Parent=Physo135081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . exon 618710 618786 . + . ID=Physo135081.1;Parent=Physo135081;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_35 . CDS 618782 618786 . + 0 ID=Physo135081;Parent=Physo135081;rank=1 scaffold_35 . CDS 618924 619011 . + 0 ID=Physo135081;Parent=Physo135081;rank=2 scaffold_35 . exon 618924 619011 . + . ID=Physo135081.2;Parent=Physo135081;constitutive=1;ensembl_phase=2;rank=2 scaffold_35 . CDS 619092 620276 . + 0 ID=Physo135081;Parent=Physo135081;rank=3 scaffold_35 . exon 619092 620276 . + . ID=Physo135081.3;Parent=Physo135081;constitutive=1;rank=3 scaffold_35 . CDS 620356 620640 . + 0 ID=Physo135081;Parent=Physo135081;rank=4 scaffold_35 . exon 620356 620640 . + . ID=Physo135081.4;Parent=Physo135081;constitutive=1;rank=4 scaffold_35 . CDS 620712 620839 . + 0 ID=Physo135081;Parent=Physo135081;rank=5 scaffold_35 . exon 620712 620839 . + . ID=Physo135081.5;Parent=Physo135081;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_35 . CDS 620905 621733 . + 0 ID=Physo135081;Parent=Physo135081;rank=6 scaffold_35 . exon 620905 621733 . + . ID=Physo135081.6;Parent=Physo135081;constitutive=1;ensembl_phase=2;rank=6 scaffold_35 . biological_region 621661 621664 0.999 - . logic_name=eponine scaffold_35 . repeat_region 621798 621821 . ? . description=trf scaffold_35 . biological_region 622054 622060 0.999 + . logic_name=eponine scaffold_35 . biological_region 627067 627070 0.999 - . logic_name=eponine scaffold_35 . biological_region 627124 627124 0.999 + . logic_name=eponine scaffold_35 . repeat_region 628566 628656 . ? . description=trf scaffold_35 ensembl protein_coding_gene 622271 622723 . + . ID=Physo135082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350134;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 622271 622723 . + . ID=Physo135082;Parent=Physo135082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 622271 622375 . + 0 ID=Physo135082;Parent=Physo135082;rank=1 scaffold_35 . exon 622271 622375 . + . ID=Physo135082.1;Parent=Physo135082;constitutive=1;rank=1 scaffold_35 . CDS 622448 622723 . + 0 ID=Physo135082;Parent=Physo135082;rank=2 scaffold_35 . exon 622448 622723 . + . ID=Physo135082.2;Parent=Physo135082;constitutive=1;rank=2 scaffold_35 ensembl protein_coding_gene 624137 625780 . + . ID=Physo135083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350135;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 624137 625780 . + . ID=Physo135083;Parent=Physo135083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 624137 624596 . + 0 ID=Physo135083;Parent=Physo135083;rank=1 scaffold_35 . exon 624137 624596 . + . ID=Physo135083.1;Parent=Physo135083;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_35 . CDS 624703 625531 . + 0 ID=Physo135083;Parent=Physo135083;rank=2 scaffold_35 . exon 624703 625531 . + . ID=Physo135083.2;Parent=Physo135083;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_35 . CDS 625606 625780 . + 0 ID=Physo135083;Parent=Physo135083;rank=3 scaffold_35 . exon 625606 625780 . + . ID=Physo135083.3;Parent=Physo135083;constitutive=1;ensembl_phase=2;rank=3 scaffold_35 ensembl protein_coding_gene 625865 627226 . - . ID=Physo135084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_350136;logic_name=jgi_physo1_1 scaffold_35 ensembl transcript 625865 627226 . - . ID=Physo135084;Parent=Physo135084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_35 . CDS 625865 627226 . - 0 ID=Physo135084;Parent=Physo135084;rank=1 scaffold_35 . exon 625865 627226 . - . ID=Physo135084.1;Parent=Physo135084;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_34 1 649775 scaffold_34 . repeat_region 99 106 . ? . description=dust scaffold_34 . biological_region 451 454 0.999 + . logic_name=eponine scaffold_34 . biological_region 468 472 0.999 + . logic_name=eponine scaffold_34 . biological_region 540 543 0.999 - . logic_name=eponine scaffold_34 . biological_region 566 572 0.999 - . logic_name=eponine scaffold_34 . biological_region 1117 1121 0.999 + . logic_name=eponine scaffold_34 . repeat_region 1535 2792 . ? . description=dust scaffold_34 . repeat_region 2870 3558 . - . description=GypsyPi-1c_I-int scaffold_34 . biological_region 4130 4132 0.999 + . logic_name=eponine scaffold_34 . biological_region 4157 4158 0.999 - . logic_name=eponine scaffold_34 . biological_region 4225 4229 0.999 - . logic_name=eponine scaffold_34 . biological_region 4585 4588 0.999 - . logic_name=eponine scaffold_34 . biological_region 4627 4627 0.999 + . logic_name=eponine scaffold_34 . repeat_region 4784 6412 . ? . description=dust scaffold_34 . repeat_region 6708 6723 . ? . description=dust scaffold_34 . biological_region 7824 7829 0.999 + . logic_name=eponine scaffold_34 . biological_region 7991 7992 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 7679 9631 . + . ID=Physo134765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340001;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 7679 9631 . + . ID=Physo134765;Parent=Physo134765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 7679 9631 . + 0 ID=Physo134765;Parent=Physo134765;rank=1 scaffold_34 . exon 7679 9631 . + . ID=Physo134765.1;Parent=Physo134765;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 12513 14847 . + . ID=Physo134766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340002;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 12513 14847 . + . ID=Physo134766;Parent=Physo134766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 12513 12520 . + 0 ID=Physo134766;Parent=Physo134766;rank=1 scaffold_34 . exon 12513 12520 . + . ID=Physo134766.1;Parent=Physo134766;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 12587 12887 . + 0 ID=Physo134766;Parent=Physo134766;rank=2 scaffold_34 . exon 12587 12887 . + . ID=Physo134766.2;Parent=Physo134766;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 12931 14847 . + 0 ID=Physo134766;Parent=Physo134766;rank=3 scaffold_34 . exon 12931 14847 . + . ID=Physo134766.3;Parent=Physo134766;constitutive=1;rank=3 scaffold_34 . repeat_region 16275 27519 . ? . description=dust scaffold_34 . repeat_region 28655 28703 . ? . description=trf scaffold_34 . repeat_region 28810 28851 . ? . description=trf scaffold_34 . repeat_region 29154 29190 . ? . description=dust scaffold_34 . biological_region 30633 30635 0.999 + . logic_name=eponine scaffold_34 . biological_region 31069 31071 0.999 - . logic_name=eponine scaffold_34 . biological_region 32174 32176 0.999 - . logic_name=eponine scaffold_34 . repeat_region 42337 42362 . ? . description=trf scaffold_34 . repeat_region 46247 46287 . ? . description=trf scaffold_34 . repeat_region 46253 46297 . ? . description=trf scaffold_34 . repeat_region 49467 49474 . ? . description=dust scaffold_34 ensembl protein_coding_gene 46200 46606 . - . ID=Physo134767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340003;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 46200 46606 . - . ID=Physo134767;Parent=Physo134767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 46200 46361 . - 0 ID=Physo134767;Parent=Physo134767;rank=2 scaffold_34 . exon 46200 46361 . - . ID=Physo134767.2;Parent=Physo134767;constitutive=1;rank=2 scaffold_34 . CDS 46385 46606 . - 0 ID=Physo134767;Parent=Physo134767;rank=1 scaffold_34 . exon 46385 46606 . - . ID=Physo134767.1;Parent=Physo134767;constitutive=1;rank=1 scaffold_34 . biological_region 53552 53554 0.999 + . logic_name=eponine scaffold_34 . biological_region 53637 53641 0.999 - . logic_name=eponine scaffold_34 . biological_region 53667 53673 0.999 - . logic_name=eponine scaffold_34 . biological_region 55414 55417 0.999 + . logic_name=eponine scaffold_34 . repeat_region 55527 56092 . - . description=Gypsy-2-I_PI-int scaffold_34 . repeat_region 56519 57814 . - . description=Gypsy-2-I_PI-int scaffold_34 ensembl protein_coding_gene 52708 53730 . + . ID=Physo134768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340004;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 52708 53730 . + . ID=Physo134768;Parent=Physo134768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 52708 53730 . + 0 ID=Physo134768;Parent=Physo134768;rank=1 scaffold_34 . exon 52708 53730 . + . ID=Physo134768.1;Parent=Physo134768;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 59620 61120 . + . ID=Physo134769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340005;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 59620 61120 . + . ID=Physo134769;Parent=Physo134769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 59620 60162 . + . ID=Physo134769.1;Parent=Physo134769;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 59674 60162 . + 0 ID=Physo134769;Parent=Physo134769;rank=1 scaffold_34 . CDS 60484 60588 . + 0 ID=Physo134769;Parent=Physo134769;rank=2 scaffold_34 . CDS 60692 61120 . + 0 ID=Physo134769;Parent=Physo134769;rank=3 scaffold_34 . repeat_region 62920 62944 . ? . description=trf scaffold_34 . exon 60484 60588 . + . ID=Physo134769.2;Parent=Physo134769;constitutive=1;rank=2 scaffold_34 . exon 60692 61120 . + . ID=Physo134769.3;Parent=Physo134769;constitutive=1;rank=3 scaffold_34 ensembl protein_coding_gene 62468 64036 . + . ID=Physo134770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340006;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 62468 64036 . + . ID=Physo134770;Parent=Physo134770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 62468 64036 . + 0 ID=Physo134770;Parent=Physo134770;rank=1 scaffold_34 . exon 62468 64036 . + . ID=Physo134770.1;Parent=Physo134770;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 67923 70476 . + . ID=Physo134772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340008;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 67923 70476 . + . ID=Physo134772;Parent=Physo134772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 67923 69027 . + 0 ID=Physo134772;Parent=Physo134772;rank=1 scaffold_34 . exon 67923 69027 . + . ID=Physo134772.1;Parent=Physo134772;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 69490 69625 . + 0 ID=Physo134772;Parent=Physo134772;rank=2 scaffold_34 . exon 69490 69625 . + . ID=Physo134772.2;Parent=Physo134772;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_34 . CDS 69691 69896 . + 0 ID=Physo134772;Parent=Physo134772;rank=3 scaffold_34 . exon 69691 69896 . + . ID=Physo134772.3;Parent=Physo134772;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 69970 70043 . + 0 ID=Physo134772;Parent=Physo134772;rank=4 scaffold_34 . exon 69970 70043 . + . ID=Physo134772.4;Parent=Physo134772;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 70114 70476 . + 0 ID=Physo134772;Parent=Physo134772;rank=5 scaffold_34 ensembl protein_coding_gene 64153 67059 . - . ID=Physo157039;biotype=protein_coding;external_name=C_scaffold_34000003;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 64153 67059 . - . ID=Physo157039;Parent=Physo157039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 64153 64206 . - 0 ID=Physo157039;Parent=Physo157039;rank=3 scaffold_34 . exon 64153 64206 . - . ID=Physo157039.3;Parent=Physo157039;constitutive=1;rank=3 scaffold_34 . CDS 64312 64429 . - 0 ID=Physo157039;Parent=Physo157039;rank=2 scaffold_34 . exon 64312 64429 . - . ID=Physo157039.2;Parent=Physo157039;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 64760 67059 . - 0 ID=Physo157039;Parent=Physo157039;rank=1 scaffold_34 . exon 64760 67059 . - . ID=Physo157039.1;Parent=Physo157039;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . repeat_region 71272 71303 . ? . description=dust scaffold_34 . biological_region 71440 71444 0.999 + . logic_name=eponine scaffold_34 . biological_region 71503 71507 0.999 + . logic_name=eponine scaffold_34 . repeat_region 75838 75847 . ? . description=dust scaffold_34 . biological_region 77288 77288 0.999 + . logic_name=eponine scaffold_34 . biological_region 77689 77692 0.999 + . logic_name=eponine scaffold_34 . exon 70114 70476 . + . ID=Physo134772.5;Parent=Physo134772;constitutive=1;rank=5 scaffold_34 ensembl protein_coding_gene 71376 72051 . + . ID=Physo134773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340009;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 71376 72051 . + . ID=Physo134773;Parent=Physo134773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 71376 71726 . + 0 ID=Physo134773;Parent=Physo134773;rank=1 scaffold_34 . exon 71376 71726 . + . ID=Physo134773.1;Parent=Physo134773;constitutive=1;rank=1 scaffold_34 . CDS 72013 72051 . + 0 ID=Physo134773;Parent=Physo134773;rank=2 scaffold_34 . exon 72013 72051 . + . ID=Physo134773.2;Parent=Physo134773;constitutive=1;rank=2 scaffold_34 ensembl protein_coding_gene 72548 73884 . + . ID=Physo134774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340010;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 72548 73884 . + . ID=Physo134774;Parent=Physo134774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 72548 73021 . + 0 ID=Physo134774;Parent=Physo134774;rank=1 scaffold_34 . exon 72548 73021 . + . ID=Physo134774.1;Parent=Physo134774;constitutive=1;rank=1 scaffold_34 . CDS 73190 73267 . + 0 ID=Physo134774;Parent=Physo134774;rank=2 scaffold_34 . exon 73190 73267 . + . ID=Physo134774.2;Parent=Physo134774;constitutive=1;rank=2 scaffold_34 . CDS 73348 73563 . + 0 ID=Physo134774;Parent=Physo134774;rank=3 scaffold_34 . exon 73348 73563 . + . ID=Physo134774.3;Parent=Physo134774;constitutive=1;rank=3 scaffold_34 . CDS 73633 73665 . + 0 ID=Physo134774;Parent=Physo134774;rank=4 scaffold_34 . exon 73633 73665 . + . ID=Physo134774.4;Parent=Physo134774;constitutive=1;rank=4 scaffold_34 . CDS 73744 73884 . + 0 ID=Physo134774;Parent=Physo134774;rank=5 scaffold_34 . exon 73744 73884 . + . ID=Physo134774.5;Parent=Physo134774;constitutive=1;rank=5 scaffold_34 ensembl protein_coding_gene 75974 77391 . - . ID=Physo134775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340011;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 75974 77391 . - . ID=Physo134775;Parent=Physo134775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 75974 76360 . - . ID=Physo134775.4;Parent=Physo134775;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_34 . CDS 75986 76360 . - 0 ID=Physo134775;Parent=Physo134775;rank=4 scaffold_34 . CDS 76442 76735 . - 0 ID=Physo134775;Parent=Physo134775;rank=3 scaffold_34 . exon 76442 76735 . - . ID=Physo134775.3;Parent=Physo134775;constitutive=1;rank=3 scaffold_34 . CDS 76809 77045 . - 0 ID=Physo134775;Parent=Physo134775;rank=2 scaffold_34 . exon 76809 77045 . - . ID=Physo134775.2;Parent=Physo134775;constitutive=1;rank=2 scaffold_34 . CDS 77140 77283 . - 0 ID=Physo134775;Parent=Physo134775;rank=1 scaffold_34 . exon 77140 77391 . - . ID=Physo134775.1;Parent=Physo134775;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 77784 78839 . + . ID=Physo157043;biotype=protein_coding;external_name=C_scaffold_34000007;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 77784 78839 . + . ID=Physo157043;Parent=Physo157043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 77784 77835 . + 0 ID=Physo157043;Parent=Physo157043;rank=1 scaffold_34 . exon 77784 77835 . + . ID=Physo157043.1;Parent=Physo157043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 77933 78051 . + 0 ID=Physo157043;Parent=Physo157043;rank=2 scaffold_34 . exon 77933 78051 . + . ID=Physo157043.2;Parent=Physo157043;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 78133 78317 . + 0 ID=Physo157043;Parent=Physo157043;rank=3 scaffold_34 . exon 78133 78317 . + . ID=Physo157043.3;Parent=Physo157043;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . CDS 78412 78481 . + 0 ID=Physo157043;Parent=Physo157043;rank=4 scaffold_34 . exon 78412 78481 . + . ID=Physo157043.4;Parent=Physo157043;constitutive=1;ensembl_phase=2;rank=4 scaffold_34 . CDS 78558 78839 . + 0 ID=Physo157043;Parent=Physo157043;rank=5 scaffold_34 . exon 78558 78839 . + . ID=Physo157043.5;Parent=Physo157043;constitutive=1;rank=5 scaffold_34 ensembl protein_coding_gene 79018 80843 . - . ID=Physo157045;biotype=protein_coding;external_name=C_scaffold_34000009;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 79018 80843 . - . ID=Physo157045;Parent=Physo157045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 79018 79092 . - 0 ID=Physo157045;Parent=Physo157045;rank=10 scaffold_34 . exon 79018 79092 . - . ID=Physo157045.10;Parent=Physo157045;constitutive=1;rank=10 scaffold_34 . CDS 79210 79473 . - 0 ID=Physo157045;Parent=Physo157045;rank=9 scaffold_34 . exon 79210 79473 . - . ID=Physo157045.9;Parent=Physo157045;constitutive=1;rank=9 scaffold_34 . CDS 79555 79690 . - 0 ID=Physo157045;Parent=Physo157045;rank=8 scaffold_34 . exon 79555 79690 . - . ID=Physo157045.8;Parent=Physo157045;constitutive=1;ensembl_phase=2;rank=8 scaffold_34 . CDS 79749 79841 . - 0 ID=Physo157045;Parent=Physo157045;rank=7 scaffold_34 . exon 79749 79841 . - . ID=Physo157045.7;Parent=Physo157045;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_34 . CDS 79890 79939 . - 0 ID=Physo157045;Parent=Physo157045;rank=6 scaffold_34 . exon 79890 79939 . - . ID=Physo157045.6;Parent=Physo157045;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_34 . CDS 80012 80076 . - 0 ID=Physo157045;Parent=Physo157045;rank=5 scaffold_34 . CDS 80159 80232 . - 0 ID=Physo157045;Parent=Physo157045;rank=4 scaffold_34 . CDS 80349 80440 . - 0 ID=Physo157045;Parent=Physo157045;rank=3 scaffold_34 . CDS 80561 80656 . - 0 ID=Physo157045;Parent=Physo157045;rank=2 scaffold_34 . CDS 80742 80843 . - 0 ID=Physo157045;Parent=Physo157045;rank=1 scaffold_34 ensembl protein_coding_gene 89343 90041 . - . ID=Physo134780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340016;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 89343 90041 . - . ID=Physo134780;Parent=Physo134780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 89343 90041 . - 0 ID=Physo134780;Parent=Physo134780;rank=1 scaffold_34 . exon 89343 90041 . - . ID=Physo134780.1;Parent=Physo134780;constitutive=1;rank=1 scaffold_34 . exon 80012 80076 . - . ID=Physo157045.5;Parent=Physo157045;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 . exon 80159 80232 . - . ID=Physo157045.4;Parent=Physo157045;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_34 . exon 80349 80440 . - . ID=Physo157045.3;Parent=Physo157045;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . exon 80561 80656 . - . ID=Physo157045.2;Parent=Physo157045;constitutive=1;rank=2 scaffold_34 . exon 80742 80843 . - . ID=Physo157045.1;Parent=Physo157045;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 80992 82647 . + . ID=Physo157047;biotype=protein_coding;external_name=C_scaffold_34000011;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 80992 82647 . + . ID=Physo157047;Parent=Physo157047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 80992 81426 . + 0 ID=Physo157047;Parent=Physo157047;rank=1 scaffold_34 . exon 80992 81426 . + . ID=Physo157047.1;Parent=Physo157047;constitutive=1;rank=1 scaffold_34 . CDS 81580 82647 . + 0 ID=Physo157047;Parent=Physo157047;rank=2 scaffold_34 . exon 81580 82647 . + . ID=Physo157047.2;Parent=Physo157047;constitutive=1;rank=2 scaffold_34 ensembl protein_coding_gene 83673 87409 . - . ID=Physo157051;biotype=protein_coding;external_name=C_scaffold_34000015;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 83673 87409 . - . ID=Physo157051;Parent=Physo157051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 83673 84251 . - 0 ID=Physo157051;Parent=Physo157051;rank=13 scaffold_34 . exon 83673 84251 . - . ID=Physo157051.13;Parent=Physo157051;constitutive=1;rank=13 scaffold_34 . CDS 84471 84566 . - 0 ID=Physo157051;Parent=Physo157051;rank=12 scaffold_34 . exon 84471 84566 . - . ID=Physo157051.12;Parent=Physo157051;constitutive=1;rank=12 scaffold_34 . CDS 84650 84709 . - 0 ID=Physo157051;Parent=Physo157051;rank=11 scaffold_34 . exon 84650 84709 . - . ID=Physo157051.11;Parent=Physo157051;constitutive=1;rank=11 scaffold_34 . CDS 84781 84813 . - 0 ID=Physo157051;Parent=Physo157051;rank=10 scaffold_34 . exon 84781 84813 . - . ID=Physo157051.10;Parent=Physo157051;constitutive=1;rank=10 scaffold_34 . CDS 84890 85151 . - 0 ID=Physo157051;Parent=Physo157051;rank=9 scaffold_34 . exon 84890 85151 . - . ID=Physo157051.9;Parent=Physo157051;constitutive=1;ensembl_phase=2;rank=9 scaffold_34 . CDS 85201 85250 . - 0 ID=Physo157051;Parent=Physo157051;rank=8 scaffold_34 . exon 85201 85250 . - . ID=Physo157051.8;Parent=Physo157051;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_34 . CDS 85382 85831 . - 0 ID=Physo157051;Parent=Physo157051;rank=7 scaffold_34 . exon 85382 85831 . - . ID=Physo157051.7;Parent=Physo157051;constitutive=1;rank=7 scaffold_34 . CDS 85909 86067 . - 0 ID=Physo157051;Parent=Physo157051;rank=6 scaffold_34 . exon 85909 86067 . - . ID=Physo157051.6;Parent=Physo157051;constitutive=1;rank=6 scaffold_34 . CDS 86148 86183 . - 0 ID=Physo157051;Parent=Physo157051;rank=5 scaffold_34 . exon 86148 86183 . - . ID=Physo157051.5;Parent=Physo157051;constitutive=1;rank=5 scaffold_34 . CDS 86250 86309 . - 0 ID=Physo157051;Parent=Physo157051;rank=4 scaffold_34 . exon 86250 86309 . - . ID=Physo157051.4;Parent=Physo157051;constitutive=1;rank=4 scaffold_34 . CDS 86500 86532 . - 0 ID=Physo157051;Parent=Physo157051;rank=3 scaffold_34 . exon 86500 86532 . - . ID=Physo157051.3;Parent=Physo157051;constitutive=1;rank=3 scaffold_34 . CDS 86608 86812 . - 0 ID=Physo157051;Parent=Physo157051;rank=2 scaffold_34 . exon 86608 86812 . - . ID=Physo157051.2;Parent=Physo157051;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 87033 87409 . - 0 ID=Physo157051;Parent=Physo157051;rank=1 scaffold_34 . exon 87033 87409 . - . ID=Physo157051.1;Parent=Physo157051;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . biological_region 89989 89992 0.999 + . logic_name=eponine scaffold_34 . biological_region 90580 90587 0.999 + . logic_name=eponine scaffold_34 . biological_region 90625 90632 0.999 - . logic_name=eponine scaffold_34 . biological_region 90640 90642 0.999 - . logic_name=eponine scaffold_34 . biological_region 90661 90666 0.999 - . logic_name=eponine scaffold_34 . biological_region 90994 90997 0.999 + . logic_name=eponine scaffold_34 . repeat_region 98052 98169 . ? . description=trf scaffold_34 . biological_region 99043 99049 0.999 - . logic_name=eponine scaffold_34 . repeat_region 99294 99332 . ? . description=trf scaffold_34 . repeat_region 99297 99333 . ? . description=dust scaffold_34 . biological_region 99525 99533 0.999 - . logic_name=eponine scaffold_34 . repeat_region 99587 99627 . ? . description=trf scaffold_34 . repeat_region 99587 99627 . ? . description=trf scaffold_34 . repeat_region 99588 99613 . ? . description=dust scaffold_34 . repeat_region 99588 99613 . ? . description=trf scaffold_34 . biological_region 99849 99852 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 90515 93621 . + . ID=Physo108801;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340001;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 90515 93621 . + . ID=Physo108801;Parent=Physo108801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 90515 93562 . + 0 ID=Physo108801;Parent=Physo108801;rank=1 scaffold_34 . exon 90515 93621 . + . ID=Physo108801.1;Parent=Physo108801;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 97667 100030 . - . ID=Physo134783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340019;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 97667 100030 . - . ID=Physo134783;Parent=Physo134783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 97667 100030 . - . ID=Physo134783.1;Parent=Physo134783;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_34 . CDS 97859 100030 . - 0 ID=Physo134783;Parent=Physo134783;rank=1 scaffold_34 ensembl protein_coding_gene 93754 97425 . - . ID=Physo157053;biotype=protein_coding;external_name=C_scaffold_34000017;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 93754 97425 . - . ID=Physo157053;Parent=Physo157053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 93754 93830 . - 0 ID=Physo157053;Parent=Physo157053;rank=13 scaffold_34 . exon 93754 93830 . - . ID=Physo157053.13;Parent=Physo157053;constitutive=1;ensembl_phase=1;rank=13 scaffold_34 . CDS 93932 94205 . - 0 ID=Physo157053;Parent=Physo157053;rank=12 scaffold_34 . exon 93932 94205 . - . ID=Physo157053.12;Parent=Physo157053;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_34 . CDS 94273 94347 . - 0 ID=Physo157053;Parent=Physo157053;rank=11 scaffold_34 . exon 94273 94347 . - . ID=Physo157053.11;Parent=Physo157053;constitutive=1;rank=11 scaffold_34 . CDS 94424 94597 . - 0 ID=Physo157053;Parent=Physo157053;rank=10 scaffold_34 . exon 94424 94597 . - . ID=Physo157053.10;Parent=Physo157053;constitutive=1;rank=10 scaffold_34 . CDS 94669 94922 . - 0 ID=Physo157053;Parent=Physo157053;rank=9 scaffold_34 . exon 94669 94922 . - . ID=Physo157053.9;Parent=Physo157053;constitutive=1;ensembl_phase=1;rank=9 scaffold_34 . CDS 94974 95218 . - 0 ID=Physo157053;Parent=Physo157053;rank=8 scaffold_34 . exon 94974 95218 . - . ID=Physo157053.8;Parent=Physo157053;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_34 . CDS 95287 95363 . - 0 ID=Physo157053;Parent=Physo157053;rank=7 scaffold_34 . exon 95287 95363 . - . ID=Physo157053.7;Parent=Physo157053;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_34 . CDS 95458 95625 . - 0 ID=Physo157053;Parent=Physo157053;rank=6 scaffold_34 . exon 95458 95625 . - . ID=Physo157053.6;Parent=Physo157053;constitutive=1;rank=6 scaffold_34 . CDS 95821 96006 . - 0 ID=Physo157053;Parent=Physo157053;rank=5 scaffold_34 . exon 95821 96006 . - . ID=Physo157053.5;Parent=Physo157053;constitutive=1;rank=5 scaffold_34 . CDS 96091 96353 . - 0 ID=Physo157053;Parent=Physo157053;rank=4 scaffold_34 . exon 96091 96353 . - . ID=Physo157053.4;Parent=Physo157053;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 96428 96878 . - 0 ID=Physo157053;Parent=Physo157053;rank=3 scaffold_34 . exon 96428 96878 . - . ID=Physo157053.3;Parent=Physo157053;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_34 . CDS 96952 97055 . - 0 ID=Physo157053;Parent=Physo157053;rank=2 scaffold_34 . exon 96952 97055 . - . ID=Physo157053.2;Parent=Physo157053;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 97164 97425 . - 0 ID=Physo157053;Parent=Physo157053;rank=1 scaffold_34 . exon 97164 97425 . - . ID=Physo157053.1;Parent=Physo157053;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 100213 102540 . - . ID=Physo134784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340020;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 100213 102540 . - . ID=Physo134784;Parent=Physo134784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 100213 102540 . - 0 ID=Physo134784;Parent=Physo134784;rank=1 scaffold_34 . exon 100213 102540 . - . ID=Physo134784.1;Parent=Physo134784;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 103677 106472 . + . ID=Physo134785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340021;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 103677 106472 . + . ID=Physo134785;Parent=Physo134785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 103677 106472 . + 0 ID=Physo134785;Parent=Physo134785;rank=1 scaffold_34 . exon 103677 106472 . + . ID=Physo134785.1;Parent=Physo134785;constitutive=1;rank=1 scaffold_34 . biological_region 112845 112847 0.999 - . logic_name=eponine scaffold_34 . biological_region 112912 112916 0.999 - . logic_name=eponine scaffold_34 . repeat_region 113471 113478 . ? . description=dust scaffold_34 . repeat_region 115203 117921 . - . description=Sola3-1_PS scaffold_34 . repeat_region 115621 115669 . ? . description=dust scaffold_34 . repeat_region 115621 115673 . ? . description=trf scaffold_34 . repeat_region 115624 115662 . ? . description=trf scaffold_34 . repeat_region 115631 115661 . ? . description=trf scaffold_34 . repeat_region 117921 118144 . - . description=Sola3-1_PS scaffold_34 . repeat_region 118147 120394 . - . description=Sola3-1_PS scaffold_34 ensembl protein_coding_gene 110620 111228 . + . ID=Physo134786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340022;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 110620 111228 . + . ID=Physo134786;Parent=Physo134786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 110620 111228 . + 0 ID=Physo134786;Parent=Physo134786;rank=1 scaffold_34 . exon 110620 111228 . + . ID=Physo134786.1;Parent=Physo134786;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 122162 123661 . + . ID=Physo108802;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340002;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 122162 123661 . + . ID=Physo108802;Parent=Physo108802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 122162 123661 . + 0 ID=Physo108802;Parent=Physo108802;rank=1 scaffold_34 . exon 122162 123661 . + . ID=Physo108802.1;Parent=Physo108802;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 125388 126893 . + . ID=Physo134788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340024;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 125388 126893 . + . ID=Physo134788;Parent=Physo134788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 125388 126893 . + . ID=Physo134788.1;Parent=Physo134788;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 126158 126331 . + 0 ID=Physo134788;Parent=Physo134788;rank=1 scaffold_34 ensembl protein_coding_gene 127015 128391 . - . ID=Physo134789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340025;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 127015 128391 . - . ID=Physo134789;Parent=Physo134789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 127015 128391 . - 0 ID=Physo134789;Parent=Physo134789;rank=1 scaffold_34 . exon 127015 128391 . - . ID=Physo134789.1;Parent=Physo134789;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 129016 130455 . - . ID=Physo134790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340026;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 129016 130455 . - . ID=Physo134790;Parent=Physo134790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 129016 130455 . - 0 ID=Physo134790;Parent=Physo134790;rank=1 scaffold_34 . exon 129016 130455 . - . ID=Physo134790.1;Parent=Physo134790;constitutive=1;rank=1 scaffold_34 . biological_region 134116 134122 0.999 - . logic_name=eponine scaffold_34 . biological_region 135187 135189 0.999 - . logic_name=eponine scaffold_34 . biological_region 135453 135457 0.999 - . logic_name=eponine scaffold_34 . biological_region 136116 136120 0.999 - . logic_name=eponine scaffold_34 . repeat_region 137553 137571 . ? . description=dust scaffold_34 . repeat_region 139579 139607 . ? . description=trf scaffold_34 . biological_region 139910 139914 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 133930 135642 . - . ID=Physo108803;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340003;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 133930 135642 . - . ID=Physo108803;Parent=Physo108803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 133930 135642 . - 0 ID=Physo108803;Parent=Physo108803;rank=1 scaffold_34 . exon 133930 135642 . - . ID=Physo108803.1;Parent=Physo108803;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 131200 132296 . + . ID=Physo134791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340027;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 131200 132296 . + . ID=Physo134791;Parent=Physo134791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 131200 131373 . + 0 ID=Physo134791;Parent=Physo134791;rank=1 scaffold_34 . exon 131200 131373 . + . ID=Physo134791.1;Parent=Physo134791;constitutive=1;rank=1 scaffold_34 . CDS 131496 131518 . + 0 ID=Physo134791;Parent=Physo134791;rank=2 scaffold_34 . exon 131496 131518 . + . ID=Physo134791.2;Parent=Physo134791;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 131602 131692 . + 0 ID=Physo134791;Parent=Physo134791;rank=3 scaffold_34 . exon 131602 131692 . + . ID=Physo134791.3;Parent=Physo134791;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 131780 131825 . + 0 ID=Physo134791;Parent=Physo134791;rank=4 scaffold_34 . exon 131780 131825 . + . ID=Physo134791.4;Parent=Physo134791;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_34 . CDS 131915 132047 . + 0 ID=Physo134791;Parent=Physo134791;rank=5 scaffold_34 . exon 131915 132047 . + . ID=Physo134791.5;Parent=Physo134791;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_34 . CDS 132119 132269 . + 0 ID=Physo134791;Parent=Physo134791;rank=6 scaffold_34 . exon 132119 132296 . + . ID=Physo134791.6;Parent=Physo134791;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_34 ensembl protein_coding_gene 132398 133708 . - . ID=Physo134792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340028;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 132398 133708 . - . ID=Physo134792;Parent=Physo134792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 132398 132499 . - . ID=Physo134792.6;Parent=Physo134792;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_34 . CDS 132451 132499 . - 0 ID=Physo134792;Parent=Physo134792;rank=6 scaffold_34 . CDS 132578 132729 . - 0 ID=Physo134792;Parent=Physo134792;rank=5 scaffold_34 . exon 132578 132729 . - . ID=Physo134792.5;Parent=Physo134792;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_34 . CDS 132809 133183 . - 0 ID=Physo134792;Parent=Physo134792;rank=4 scaffold_34 . exon 132809 133183 . - . ID=Physo134792.4;Parent=Physo134792;constitutive=1;rank=4 scaffold_34 . CDS 133250 133410 . - 0 ID=Physo134792;Parent=Physo134792;rank=3 scaffold_34 . exon 133250 133410 . - . ID=Physo134792.3;Parent=Physo134792;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 133502 133526 . - 0 ID=Physo134792;Parent=Physo134792;rank=2 scaffold_34 . exon 133502 133526 . - . ID=Physo134792.2;Parent=Physo134792;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . CDS 133651 133689 . - 0 ID=Physo134792;Parent=Physo134792;rank=1 scaffold_34 . exon 133651 133708 . - . ID=Physo134792.1;Parent=Physo134792;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 135949 136918 . - . ID=Physo134794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340030;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 135949 136918 . - . ID=Physo134794;Parent=Physo134794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 135949 136341 . - 0 ID=Physo134794;Parent=Physo134794;rank=2 scaffold_34 . exon 135949 136341 . - . ID=Physo134794.2;Parent=Physo134794;constitutive=1;rank=2 scaffold_34 . CDS 136415 136918 . - 0 ID=Physo134794;Parent=Physo134794;rank=1 scaffold_34 . exon 136415 136918 . - . ID=Physo134794.1;Parent=Physo134794;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 139489 140194 . - . ID=Physo134795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340031;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 139489 140194 . - . ID=Physo134795;Parent=Physo134795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 139489 139500 . - 0 ID=Physo134795;Parent=Physo134795;rank=4 scaffold_34 . exon 139489 139500 . - . ID=Physo134795.4;Parent=Physo134795;constitutive=1;rank=4 scaffold_34 . CDS 139611 139656 . - 0 ID=Physo134795;Parent=Physo134795;rank=3 scaffold_34 . exon 139611 139656 . - . ID=Physo134795.3;Parent=Physo134795;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 139742 140032 . - 0 ID=Physo134795;Parent=Physo134795;rank=2 scaffold_34 . exon 139742 140032 . - . ID=Physo134795.2;Parent=Physo134795;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_34 . CDS 140112 140194 . - 0 ID=Physo134795;Parent=Physo134795;rank=1 scaffold_34 ensembl protein_coding_gene 146312 146666 . + . ID=Physo108804;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340004;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 146312 146666 . + . ID=Physo108804;Parent=Physo108804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 146312 146666 . + . ID=Physo108804.1;Parent=Physo108804;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 146317 146664 . + 0 ID=Physo108804;Parent=Physo108804;rank=1 scaffold_34 ensembl protein_coding_gene 147633 148050 . - . ID=Physo108805;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340005;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 147633 148050 . - . ID=Physo108805;Parent=Physo108805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 147633 148050 . - . ID=Physo108805.1;Parent=Physo108805;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 147635 148048 . - 0 ID=Physo108805;Parent=Physo108805;rank=1 scaffold_34 ensembl protein_coding_gene 148414 148943 . + . ID=Physo108806;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340006;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 148414 148943 . + . ID=Physo108806;Parent=Physo108806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 148414 148943 . + . ID=Physo108806.1;Parent=Physo108806;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 148415 148807 . + 0 ID=Physo108806;Parent=Physo108806;rank=1 scaffold_34 . exon 140112 140194 . - . ID=Physo134795.1;Parent=Physo134795;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 140529 142181 . + . ID=Physo134796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340032;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 140529 142181 . + . ID=Physo134796;Parent=Physo134796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 140529 142181 . + 0 ID=Physo134796;Parent=Physo134796;rank=1 scaffold_34 . exon 140529 142181 . + . ID=Physo134796.1;Parent=Physo134796;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 142235 145924 . - . ID=Physo134797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340033;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 142235 145924 . - . ID=Physo134797;Parent=Physo134797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 142235 142479 . - . ID=Physo134797.10;Parent=Physo134797;constitutive=1;ensembl_end_phase=-1;rank=10 scaffold_34 . CDS 142420 142479 . - 0 ID=Physo134797;Parent=Physo134797;rank=10 scaffold_34 . CDS 142549 142938 . - 0 ID=Physo134797;Parent=Physo134797;rank=9 scaffold_34 . exon 142549 142938 . - . ID=Physo134797.9;Parent=Physo134797;constitutive=1;rank=9 scaffold_34 . CDS 143013 143213 . - 0 ID=Physo134797;Parent=Physo134797;rank=8 scaffold_34 . exon 143013 143213 . - . ID=Physo134797.8;Parent=Physo134797;constitutive=1;rank=8 scaffold_34 . CDS 143294 143419 . - 0 ID=Physo134797;Parent=Physo134797;rank=7 scaffold_34 . exon 143294 143419 . - . ID=Physo134797.7;Parent=Physo134797;constitutive=1;rank=7 scaffold_34 . CDS 143494 144296 . - 0 ID=Physo134797;Parent=Physo134797;rank=6 scaffold_34 . exon 143494 144296 . - . ID=Physo134797.6;Parent=Physo134797;constitutive=1;ensembl_phase=1;rank=6 scaffold_34 . CDS 144369 144627 . - 0 ID=Physo134797;Parent=Physo134797;rank=5 scaffold_34 . exon 144369 144627 . - . ID=Physo134797.5;Parent=Physo134797;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_34 . CDS 144725 145120 . - 0 ID=Physo134797;Parent=Physo134797;rank=4 scaffold_34 . exon 144725 145120 . - . ID=Physo134797.4;Parent=Physo134797;constitutive=1;rank=4 scaffold_34 . CDS 145212 145307 . - 0 ID=Physo134797;Parent=Physo134797;rank=3 scaffold_34 . exon 145212 145307 . - . ID=Physo134797.3;Parent=Physo134797;constitutive=1;rank=3 scaffold_34 . CDS 145387 145658 . - 0 ID=Physo134797;Parent=Physo134797;rank=2 scaffold_34 . exon 145387 145658 . - . ID=Physo134797.2;Parent=Physo134797;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 145795 145924 . - 0 ID=Physo134797;Parent=Physo134797;rank=1 scaffold_34 . exon 145795 145924 . - . ID=Physo134797.1;Parent=Physo134797;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 149236 150564 . - . ID=Physo134801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340037;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 149236 150564 . - . ID=Physo134801;Parent=Physo134801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 149236 150564 . - 0 ID=Physo134801;Parent=Physo134801;rank=1 scaffold_34 . exon 149236 150564 . - . ID=Physo134801.1;Parent=Physo134801;constitutive=1;rank=1 scaffold_34 . biological_region 150156 150160 0.999 + . logic_name=eponine scaffold_34 . biological_region 150291 150300 0.999 - . logic_name=eponine scaffold_34 . biological_region 150345 150351 0.999 - . logic_name=eponine scaffold_34 . biological_region 150349 150356 0.999 + . logic_name=eponine scaffold_34 . biological_region 150402 150405 0.999 + . logic_name=eponine scaffold_34 . repeat_region 151118 151125 . ? . description=dust scaffold_34 . biological_region 151196 151198 0.999 - . logic_name=eponine scaffold_34 . biological_region 151272 151279 0.999 + . logic_name=eponine scaffold_34 . biological_region 151286 151287 0.999 - . logic_name=eponine scaffold_34 . repeat_region 154063 154106 . ? . description=trf scaffold_34 . repeat_region 155552 155582 . ? . description=trf scaffold_34 . repeat_region 158486 158540 . ? . description=dust scaffold_34 . repeat_region 158899 159004 . ? . description=trf scaffold_34 ensembl protein_coding_gene 151636 154221 . + . ID=Physo134802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340038;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 151636 154221 . + . ID=Physo134802;Parent=Physo134802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 151636 154221 . + . ID=Physo134802.1;Parent=Physo134802;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 153219 153410 . + 0 ID=Physo134802;Parent=Physo134802;rank=1 scaffold_34 ensembl protein_coding_gene 154789 158031 . - . ID=Physo134803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340039;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 154789 158031 . - . ID=Physo134803;Parent=Physo134803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 154789 158031 . - 0 ID=Physo134803;Parent=Physo134803;rank=1 scaffold_34 . exon 154789 158031 . - . ID=Physo134803.1;Parent=Physo134803;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 161597 163019 . + . ID=Physo134804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340040;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 161597 163019 . + . ID=Physo134804;Parent=Physo134804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 161597 161719 . + 0 ID=Physo134804;Parent=Physo134804;rank=1 scaffold_34 . exon 161597 161719 . + . ID=Physo134804.1;Parent=Physo134804;constitutive=1;rank=1 scaffold_34 . CDS 161787 161899 . + 0 ID=Physo134804;Parent=Physo134804;rank=2 scaffold_34 . exon 161787 161899 . + . ID=Physo134804.2;Parent=Physo134804;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 161986 162049 . + 0 ID=Physo134804;Parent=Physo134804;rank=3 scaffold_34 . exon 161986 162049 . + . ID=Physo134804.3;Parent=Physo134804;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 162125 162200 . + 0 ID=Physo134804;Parent=Physo134804;rank=4 scaffold_34 . exon 162125 162200 . + . ID=Physo134804.4;Parent=Physo134804;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_34 . CDS 162265 162319 . + 0 ID=Physo134804;Parent=Physo134804;rank=5 scaffold_34 . exon 162265 162319 . + . ID=Physo134804.5;Parent=Physo134804;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_34 . CDS 162390 162681 . + 0 ID=Physo134804;Parent=Physo134804;rank=6 scaffold_34 . exon 162390 162681 . + . ID=Physo134804.6;Parent=Physo134804;constitutive=1;ensembl_phase=2;rank=6 scaffold_34 . CDS 162762 162835 . + 0 ID=Physo134804;Parent=Physo134804;rank=7 scaffold_34 . exon 162762 162835 . + . ID=Physo134804.7;Parent=Physo134804;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_34 . CDS 162908 163019 . + 0 ID=Physo134804;Parent=Physo134804;rank=8 scaffold_34 . exon 162908 163019 . + . ID=Physo134804.8;Parent=Physo134804;constitutive=1;ensembl_phase=2;rank=8 scaffold_34 ensembl protein_coding_gene 159973 161158 . - . ID=Physo157055;biotype=protein_coding;external_name=C_scaffold_34000019;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 159973 161158 . - . ID=Physo157055;Parent=Physo157055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 159973 160131 . - 0 ID=Physo157055;Parent=Physo157055;rank=4 scaffold_34 . exon 159973 160131 . - . ID=Physo157055.4;Parent=Physo157055;constitutive=1;rank=4 scaffold_34 . CDS 160514 160629 . - 0 ID=Physo157055;Parent=Physo157055;rank=3 scaffold_34 . exon 160514 160629 . - . ID=Physo157055.3;Parent=Physo157055;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 160715 160930 . - 0 ID=Physo157055;Parent=Physo157055;rank=2 scaffold_34 . exon 160715 160930 . - . ID=Physo157055.2;Parent=Physo157055;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 161005 161158 . - 0 ID=Physo157055;Parent=Physo157055;rank=1 scaffold_34 . exon 161005 161158 . - . ID=Physo157055.1;Parent=Physo157055;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 164532 166777 . - . ID=Physo157058;biotype=protein_coding;external_name=C_scaffold_34000022;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 164532 166777 . - . ID=Physo157058;Parent=Physo157058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 164532 164539 . - 0 ID=Physo157058;Parent=Physo157058;rank=8 scaffold_34 . exon 164532 164539 . - . ID=Physo157058.8;Parent=Physo157058;constitutive=1;ensembl_phase=1;rank=8 scaffold_34 . CDS 164604 164800 . - 0 ID=Physo157058;Parent=Physo157058;rank=7 scaffold_34 . exon 164604 164800 . - . ID=Physo157058.7;Parent=Physo157058;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_34 . CDS 164868 164944 . - 0 ID=Physo157058;Parent=Physo157058;rank=6 scaffold_34 . exon 164868 164944 . - . ID=Physo157058.6;Parent=Physo157058;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_34 . CDS 165130 165567 . - 0 ID=Physo157058;Parent=Physo157058;rank=5 scaffold_34 . exon 165130 165567 . - . ID=Physo157058.5;Parent=Physo157058;constitutive=1;rank=5 scaffold_34 . CDS 165657 165830 . - 0 ID=Physo157058;Parent=Physo157058;rank=4 scaffold_34 . exon 165657 165830 . - . ID=Physo157058.4;Parent=Physo157058;constitutive=1;rank=4 scaffold_34 . CDS 165877 166137 . - 0 ID=Physo157058;Parent=Physo157058;rank=3 scaffold_34 . exon 165877 166137 . - . ID=Physo157058.3;Parent=Physo157058;constitutive=1;rank=3 scaffold_34 . CDS 166382 166632 . - 0 ID=Physo157058;Parent=Physo157058;rank=2 scaffold_34 . exon 166382 166632 . - . ID=Physo157058.2;Parent=Physo157058;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 166660 166777 . - 0 ID=Physo157058;Parent=Physo157058;rank=1 scaffold_34 . exon 166660 166777 . - . ID=Physo157058.1;Parent=Physo157058;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 167238 170967 . - . ID=Physo157061;biotype=protein_coding;external_name=C_scaffold_34000025;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 167238 170967 . - . ID=Physo157061;Parent=Physo157061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 167238 167822 . - 0 ID=Physo157061;Parent=Physo157061;rank=11 scaffold_34 . exon 167238 167822 . - . ID=Physo157061.11;Parent=Physo157061;constitutive=1;rank=11 scaffold_34 . CDS 167893 167980 . - 0 ID=Physo157061;Parent=Physo157061;rank=10 scaffold_34 . exon 167893 167980 . - . ID=Physo157061.10;Parent=Physo157061;constitutive=1;ensembl_phase=2;rank=10 scaffold_34 . CDS 168053 168555 . - 0 ID=Physo157061;Parent=Physo157061;rank=9 scaffold_34 . exon 168053 168555 . - . ID=Physo157061.9;Parent=Physo157061;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_34 . CDS 168619 168959 . - 0 ID=Physo157061;Parent=Physo157061;rank=8 scaffold_34 . exon 168619 168959 . - . ID=Physo157061.8;Parent=Physo157061;constitutive=1;ensembl_phase=1;rank=8 scaffold_34 . CDS 169065 169210 . - 0 ID=Physo157061;Parent=Physo157061;rank=7 scaffold_34 . exon 169065 169210 . - . ID=Physo157061.7;Parent=Physo157061;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_34 . CDS 169514 169847 . - 0 ID=Physo157061;Parent=Physo157061;rank=6 scaffold_34 . exon 169514 169847 . - . ID=Physo157061.6;Parent=Physo157061;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_34 . CDS 170025 170131 . - 0 ID=Physo157061;Parent=Physo157061;rank=5 scaffold_34 . CDS 170449 170501 . - 0 ID=Physo157061;Parent=Physo157061;rank=4 scaffold_34 . CDS 170554 170644 . - 0 ID=Physo157061;Parent=Physo157061;rank=3 scaffold_34 . CDS 170724 170735 . - 0 ID=Physo157061;Parent=Physo157061;rank=2 scaffold_34 . CDS 170960 170967 . - 0 ID=Physo157061;Parent=Physo157061;rank=1 scaffold_34 . biological_region 177855 177857 0.999 + . logic_name=eponine scaffold_34 . biological_region 178928 178933 0.999 - . logic_name=eponine scaffold_34 . biological_region 179308 179312 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 179526 180621 . + . ID=Physo134808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340044;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 179526 180621 . + . ID=Physo134808;Parent=Physo134808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 179526 180621 . + . ID=Physo134808.1;Parent=Physo134808;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 179566 180621 . + 0 ID=Physo134808;Parent=Physo134808;rank=1 scaffold_34 . exon 170025 170131 . - . ID=Physo157061.5;Parent=Physo157061;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_34 . exon 170449 170501 . - . ID=Physo157061.4;Parent=Physo157061;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_34 . exon 170554 170644 . - . ID=Physo157061.3;Parent=Physo157061;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . exon 170724 170735 . - . ID=Physo157061.2;Parent=Physo157061;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_34 . exon 170960 170967 . - . ID=Physo157061.1;Parent=Physo157061;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 176535 179344 . - . ID=Physo157062;biotype=protein_coding;external_name=C_scaffold_34000026;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 176535 179344 . - . ID=Physo157062;Parent=Physo157062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 176535 176548 . - 0 ID=Physo157062;Parent=Physo157062;rank=8 scaffold_34 . exon 176535 176548 . - . ID=Physo157062.8;Parent=Physo157062;constitutive=1;ensembl_phase=1;rank=8 scaffold_34 . CDS 176625 176778 . - 0 ID=Physo157062;Parent=Physo157062;rank=7 scaffold_34 . exon 176625 176778 . - . ID=Physo157062.7;Parent=Physo157062;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_34 . CDS 176916 176979 . - 0 ID=Physo157062;Parent=Physo157062;rank=6 scaffold_34 . exon 176916 176979 . - . ID=Physo157062.6;Parent=Physo157062;constitutive=1;ensembl_phase=2;rank=6 scaffold_34 . CDS 177326 177591 . - 0 ID=Physo157062;Parent=Physo157062;rank=5 scaffold_34 . exon 177326 177591 . - . ID=Physo157062.5;Parent=Physo157062;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_34 . CDS 177668 177947 . - 0 ID=Physo157062;Parent=Physo157062;rank=4 scaffold_34 . exon 177668 177947 . - . ID=Physo157062.4;Parent=Physo157062;constitutive=1;ensembl_phase=2;rank=4 scaffold_34 . CDS 178113 178213 . - 0 ID=Physo157062;Parent=Physo157062;rank=3 scaffold_34 . exon 178113 178213 . - . ID=Physo157062.3;Parent=Physo157062;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . CDS 178292 178356 . - 0 ID=Physo157062;Parent=Physo157062;rank=2 scaffold_34 . exon 178292 178356 . - . ID=Physo157062.2;Parent=Physo157062;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 178498 179344 . - 0 ID=Physo157062;Parent=Physo157062;rank=1 scaffold_34 . exon 178498 179344 . - . ID=Physo157062.1;Parent=Physo157062;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 180762 182682 . - . ID=Physo134809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340045;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 180762 182682 . - . ID=Physo134809;Parent=Physo134809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 180762 181021 . - 0 ID=Physo134809;Parent=Physo134809;rank=4 scaffold_34 . exon 180762 181021 . - . ID=Physo134809.4;Parent=Physo134809;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 181280 181355 . - 0 ID=Physo134809;Parent=Physo134809;rank=3 scaffold_34 . exon 181280 181355 . - . ID=Physo134809.3;Parent=Physo134809;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_34 . CDS 181420 181568 . - 0 ID=Physo134809;Parent=Physo134809;rank=2 scaffold_34 . exon 181420 181568 . - . ID=Physo134809.2;Parent=Physo134809;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 181905 182682 . - 0 ID=Physo134809;Parent=Physo134809;rank=1 scaffold_34 . exon 181905 182682 . - . ID=Physo134809.1;Parent=Physo134809;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 185106 186566 . + . ID=Physo134810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340046;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 185106 186566 . + . ID=Physo134810;Parent=Physo134810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 185106 185172 . + 0 ID=Physo134810;Parent=Physo134810;rank=1 scaffold_34 . exon 185106 185172 . + . ID=Physo134810.1;Parent=Physo134810;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 185247 185521 . + 0 ID=Physo134810;Parent=Physo134810;rank=2 scaffold_34 . exon 185247 185521 . + . ID=Physo134810.2;Parent=Physo134810;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 185612 185733 . + 0 ID=Physo134810;Parent=Physo134810;rank=3 scaffold_34 . exon 185612 185733 . + . ID=Physo134810.3;Parent=Physo134810;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . CDS 185810 186033 . + 0 ID=Physo134810;Parent=Physo134810;rank=4 scaffold_34 . exon 185810 186033 . + . ID=Physo134810.4;Parent=Physo134810;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_34 . CDS 186117 186225 . + 0 ID=Physo134810;Parent=Physo134810;rank=5 scaffold_34 . exon 186117 186225 . + . ID=Physo134810.5;Parent=Physo134810;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_34 . CDS 186308 186425 . + 0 ID=Physo134810;Parent=Physo134810;rank=6 scaffold_34 . exon 186308 186425 . + . ID=Physo134810.6;Parent=Physo134810;constitutive=1;ensembl_phase=2;rank=6 scaffold_34 . CDS 186504 186566 . + 0 ID=Physo134810;Parent=Physo134810;rank=7 scaffold_34 . exon 186504 186566 . + . ID=Physo134810.7;Parent=Physo134810;constitutive=1;rank=7 scaffold_34 . repeat_region 190006 190034 . ? . description=dust scaffold_34 . biological_region 190385 190388 0.999 - . logic_name=eponine scaffold_34 . biological_region 190395 190398 0.999 + . logic_name=eponine scaffold_34 . biological_region 190436 190441 0.999 - . logic_name=eponine scaffold_34 . repeat_region 194135 194166 . ? . description=trf scaffold_34 . biological_region 194939 194940 0.999 - . logic_name=eponine scaffold_34 . biological_region 195420 195424 0.999 - . logic_name=eponine scaffold_34 . biological_region 196269 196272 0.999 - . logic_name=eponine scaffold_34 . biological_region 196288 196292 0.999 - . logic_name=eponine scaffold_34 . biological_region 196313 196316 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 190166 192224 . + . ID=Physo108807;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340007;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 190166 192224 . + . ID=Physo108807;Parent=Physo108807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 190166 190278 . + 0 ID=Physo108807;Parent=Physo108807;rank=1 scaffold_34 . exon 190166 190278 . + . ID=Physo108807.1;Parent=Physo108807;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 190596 190699 . + 0 ID=Physo108807;Parent=Physo108807;rank=2 scaffold_34 . exon 190596 190699 . + . ID=Physo108807.2;Parent=Physo108807;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 190787 190893 . + 0 ID=Physo108807;Parent=Physo108807;rank=3 scaffold_34 . exon 190787 190893 . + . ID=Physo108807.3;Parent=Physo108807;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 190972 191104 . + 0 ID=Physo108807;Parent=Physo108807;rank=4 scaffold_34 . exon 190972 191104 . + . ID=Physo108807.4;Parent=Physo108807;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_34 . CDS 191168 191332 . + 0 ID=Physo108807;Parent=Physo108807;rank=5 scaffold_34 . exon 191168 191332 . + . ID=Physo108807.5;Parent=Physo108807;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_34 . CDS 191403 191521 . + 0 ID=Physo108807;Parent=Physo108807;rank=6 scaffold_34 . exon 191403 191521 . + . ID=Physo108807.6;Parent=Physo108807;constitutive=1;ensembl_phase=1;rank=6 scaffold_34 . CDS 191605 192150 . + 0 ID=Physo108807;Parent=Physo108807;rank=7 scaffold_34 . exon 191605 192224 . + . ID=Physo108807.7;Parent=Physo108807;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_34 ensembl protein_coding_gene 192387 194125 . - . ID=Physo134812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340048;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 192387 194125 . - . ID=Physo134812;Parent=Physo134812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 192387 192534 . - 0 ID=Physo134812;Parent=Physo134812;rank=5 scaffold_34 . exon 192387 192534 . - . ID=Physo134812.5;Parent=Physo134812;constitutive=1;ensembl_phase=2;rank=5 scaffold_34 . CDS 192627 192839 . - 0 ID=Physo134812;Parent=Physo134812;rank=4 scaffold_34 . exon 192627 192839 . - . ID=Physo134812.4;Parent=Physo134812;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_34 . CDS 192905 192997 . - 0 ID=Physo134812;Parent=Physo134812;rank=3 scaffold_34 . exon 192905 192997 . - . ID=Physo134812.3;Parent=Physo134812;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_34 . CDS 193067 193954 . - 0 ID=Physo134812;Parent=Physo134812;rank=2 scaffold_34 . exon 193067 193954 . - . ID=Physo134812.2;Parent=Physo134812;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_34 . CDS 194037 194125 . - 0 ID=Physo134812;Parent=Physo134812;rank=1 scaffold_34 . exon 194037 194125 . - . ID=Physo134812.1;Parent=Physo134812;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 195282 196705 . + . ID=Physo134813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340049;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 195282 196705 . + . ID=Physo134813;Parent=Physo134813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 195282 196661 . + 0 ID=Physo134813;Parent=Physo134813;rank=1 scaffold_34 . exon 195282 196705 . + . ID=Physo134813.1;Parent=Physo134813;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 197324 198945 . + . ID=Physo134814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340050;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 197324 198945 . + . ID=Physo134814;Parent=Physo134814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 197324 198239 . + 0 ID=Physo134814;Parent=Physo134814;rank=1 scaffold_34 . exon 197324 198239 . + . ID=Physo134814.1;Parent=Physo134814;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 198390 198529 . + 0 ID=Physo134814;Parent=Physo134814;rank=2 scaffold_34 . exon 198390 198529 . + . ID=Physo134814.2;Parent=Physo134814;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 198632 198866 . + 0 ID=Physo134814;Parent=Physo134814;rank=3 scaffold_34 . exon 198632 198866 . + . ID=Physo134814.3;Parent=Physo134814;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_34 . CDS 198929 198945 . + 0 ID=Physo134814;Parent=Physo134814;rank=4 scaffold_34 . exon 198929 198945 . + . ID=Physo134814.4;Parent=Physo134814;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 ensembl protein_coding_gene 206017 211206 . + . ID=Physo157067;biotype=protein_coding;external_name=C_scaffold_34000031;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 206017 211206 . + . ID=Physo157067;Parent=Physo157067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 206017 206248 . + 0 ID=Physo157067;Parent=Physo157067;rank=1 scaffold_34 . exon 206017 206248 . + . ID=Physo157067.1;Parent=Physo157067;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 206459 206521 . + 0 ID=Physo157067;Parent=Physo157067;rank=2 scaffold_34 . exon 206459 206521 . + . ID=Physo157067.2;Parent=Physo157067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 206627 206788 . + 0 ID=Physo157067;Parent=Physo157067;rank=3 scaffold_34 . exon 206627 206788 . + . ID=Physo157067.3;Parent=Physo157067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 206885 207070 . + 0 ID=Physo157067;Parent=Physo157067;rank=4 scaffold_34 . exon 206885 207070 . + . ID=Physo157067.4;Parent=Physo157067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 207293 208048 . + 0 ID=Physo157067;Parent=Physo157067;rank=5 scaffold_34 . exon 207293 208048 . + . ID=Physo157067.5;Parent=Physo157067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_34 . CDS 208097 209215 . + 0 ID=Physo157067;Parent=Physo157067;rank=6 scaffold_34 . exon 208097 209215 . + . ID=Physo157067.6;Parent=Physo157067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_34 . CDS 209240 210940 . + 0 ID=Physo157067;Parent=Physo157067;rank=7 scaffold_34 . exon 209240 210940 . + . ID=Physo157067.7;Parent=Physo157067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_34 . CDS 210983 211206 . + 0 ID=Physo157067;Parent=Physo157067;rank=8 scaffold_34 . biological_region 210573 210575 0.999 - . logic_name=eponine scaffold_34 . biological_region 214367 214369 0.999 - . logic_name=eponine scaffold_34 . biological_region 214856 214858 0.999 - . logic_name=eponine scaffold_34 . biological_region 215504 215505 0.999 - . logic_name=eponine scaffold_34 . biological_region 215536 215538 0.999 - . logic_name=eponine scaffold_34 . biological_region 216964 216966 0.999 - . logic_name=eponine scaffold_34 . biological_region 217038 217039 0.999 - . logic_name=eponine scaffold_34 . repeat_region 218096 218103 . ? . description=dust scaffold_34 . repeat_region 218110 218125 . ? . description=dust scaffold_34 . biological_region 218916 218918 0.999 - . logic_name=eponine scaffold_34 . repeat_region 219805 219813 . ? . description=dust scaffold_34 ensembl protein_coding_gene 217037 218341 . - . ID=Physo108808;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340008;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 217037 218341 . - . ID=Physo108808;Parent=Physo108808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 217037 217108 . - 0 ID=Physo108808;Parent=Physo108808;rank=5 scaffold_34 . exon 217037 217108 . - . ID=Physo108808.5;Parent=Physo108808;constitutive=1;rank=5 scaffold_34 . CDS 217198 217377 . - 0 ID=Physo108808;Parent=Physo108808;rank=4 scaffold_34 . exon 217198 217377 . - . ID=Physo108808.4;Parent=Physo108808;constitutive=1;rank=4 scaffold_34 . CDS 217459 217827 . - 0 ID=Physo108808;Parent=Physo108808;rank=3 scaffold_34 . exon 217459 217827 . - . ID=Physo108808.3;Parent=Physo108808;constitutive=1;rank=3 scaffold_34 . CDS 217919 218071 . - 0 ID=Physo108808;Parent=Physo108808;rank=2 scaffold_34 . exon 217919 218071 . - . ID=Physo108808.2;Parent=Physo108808;constitutive=1;rank=2 scaffold_34 . CDS 218173 218325 . - 0 ID=Physo108808;Parent=Physo108808;rank=1 scaffold_34 . exon 218173 218341 . - . ID=Physo108808.1;Parent=Physo108808;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 214877 216626 . - . ID=Physo134816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340052;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 214877 216626 . - . ID=Physo134816;Parent=Physo134816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 214877 215027 . - 0 ID=Physo134816;Parent=Physo134816;rank=3 scaffold_34 . exon 214877 215027 . - . ID=Physo134816.3;Parent=Physo134816;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 215120 216467 . - 0 ID=Physo134816;Parent=Physo134816;rank=2 scaffold_34 . exon 215120 216467 . - . ID=Physo134816.2;Parent=Physo134816;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_34 . CDS 216554 216626 . - 0 ID=Physo134816;Parent=Physo134816;rank=1 scaffold_34 . exon 216554 216626 . - . ID=Physo134816.1;Parent=Physo134816;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 218616 221209 . - . ID=Physo134818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340054;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 218616 221209 . - . ID=Physo134818;Parent=Physo134818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 218616 219330 . - 0 ID=Physo134818;Parent=Physo134818;rank=4 scaffold_34 . exon 218616 219330 . - . ID=Physo134818.4;Parent=Physo134818;constitutive=1;ensembl_phase=2;rank=4 scaffold_34 . CDS 219414 219742 . - 0 ID=Physo134818;Parent=Physo134818;rank=3 scaffold_34 . exon 219414 219742 . - . ID=Physo134818.3;Parent=Physo134818;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . CDS 219840 221027 . - 0 ID=Physo134818;Parent=Physo134818;rank=2 scaffold_34 . exon 219840 221027 . - . ID=Physo134818.2;Parent=Physo134818;constitutive=1;rank=2 scaffold_34 . CDS 221108 221209 . - 0 ID=Physo134818;Parent=Physo134818;rank=1 scaffold_34 . exon 210983 211206 . + . ID=Physo157067.8;Parent=Physo157067;constitutive=1;ensembl_phase=1;rank=8 scaffold_34 . repeat_region 223172 223233 . ? . description=trf scaffold_34 . repeat_region 226150 226170 . ? . description=trf scaffold_34 . exon 221108 221209 . - . ID=Physo134818.1;Parent=Physo134818;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 221560 222760 . + . ID=Physo134819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340055;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 221560 222760 . + . ID=Physo134819;Parent=Physo134819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 221560 222011 . + 0 ID=Physo134819;Parent=Physo134819;rank=1 scaffold_34 . exon 221560 222011 . + . ID=Physo134819.1;Parent=Physo134819;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 222068 222109 . + 0 ID=Physo134819;Parent=Physo134819;rank=2 scaffold_34 . exon 222068 222109 . + . ID=Physo134819.2;Parent=Physo134819;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_34 . CDS 222181 222256 . + 0 ID=Physo134819;Parent=Physo134819;rank=3 scaffold_34 . exon 222181 222256 . + . ID=Physo134819.3;Parent=Physo134819;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 222335 222590 . + 0 ID=Physo134819;Parent=Physo134819;rank=4 scaffold_34 . exon 222335 222590 . + . ID=Physo134819.4;Parent=Physo134819;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_34 . CDS 222660 222760 . + 0 ID=Physo134819;Parent=Physo134819;rank=5 scaffold_34 . exon 222660 222760 . + . ID=Physo134819.5;Parent=Physo134819;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 ensembl protein_coding_gene 228427 231252 . - . ID=Physo134823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340059;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 228427 231252 . - . ID=Physo134823;Parent=Physo134823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 228427 230451 . - 0 ID=Physo134823;Parent=Physo134823;rank=2 scaffold_34 . exon 228427 230451 . - . ID=Physo134823.2;Parent=Physo134823;constitutive=1;rank=2 scaffold_34 . CDS 230712 231191 . - 0 ID=Physo134823;Parent=Physo134823;rank=1 scaffold_34 ensembl protein_coding_gene 222867 224326 . - . ID=Physo157070;biotype=protein_coding;external_name=C_scaffold_34000034;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 222867 224326 . - . ID=Physo157070;Parent=Physo157070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 222867 222932 . - 0 ID=Physo157070;Parent=Physo157070;rank=6 scaffold_34 . exon 222867 222932 . - . ID=Physo157070.6;Parent=Physo157070;constitutive=1;rank=6 scaffold_34 . CDS 223012 223314 . - 0 ID=Physo157070;Parent=Physo157070;rank=5 scaffold_34 . exon 223012 223314 . - . ID=Physo157070.5;Parent=Physo157070;constitutive=1;rank=5 scaffold_34 . CDS 223597 223707 . - 0 ID=Physo157070;Parent=Physo157070;rank=4 scaffold_34 . exon 223597 223707 . - . ID=Physo157070.4;Parent=Physo157070;constitutive=1;rank=4 scaffold_34 . CDS 223773 223848 . - 0 ID=Physo157070;Parent=Physo157070;rank=3 scaffold_34 . exon 223773 223848 . - . ID=Physo157070.3;Parent=Physo157070;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 223914 223987 . - 0 ID=Physo157070;Parent=Physo157070;rank=2 scaffold_34 . exon 223914 223987 . - . ID=Physo157070.2;Parent=Physo157070;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 224060 224326 . - 0 ID=Physo157070;Parent=Physo157070;rank=1 scaffold_34 . exon 224060 224326 . - . ID=Physo157070.1;Parent=Physo157070;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 224468 226554 . - . ID=Physo157071;biotype=protein_coding;external_name=C_scaffold_34000035;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 224468 226554 . - . ID=Physo157071;Parent=Physo157071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 224468 225244 . - 0 ID=Physo157071;Parent=Physo157071;rank=5 scaffold_34 . exon 224468 225244 . - . ID=Physo157071.5;Parent=Physo157071;constitutive=1;rank=5 scaffold_34 . CDS 225319 225422 . - 0 ID=Physo157071;Parent=Physo157071;rank=4 scaffold_34 . exon 225319 225422 . - . ID=Physo157071.4;Parent=Physo157071;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 225495 225611 . - 0 ID=Physo157071;Parent=Physo157071;rank=3 scaffold_34 . exon 225495 225611 . - . ID=Physo157071.3;Parent=Physo157071;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 225678 225783 . - 0 ID=Physo157071;Parent=Physo157071;rank=2 scaffold_34 . exon 225678 225783 . - . ID=Physo157071.2;Parent=Physo157071;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . CDS 226093 226554 . - 0 ID=Physo157071;Parent=Physo157071;rank=1 scaffold_34 . exon 226093 226554 . - . ID=Physo157071.1;Parent=Physo157071;constitutive=1;rank=1 scaffold_34 . biological_region 235525 235527 0.999 - . logic_name=eponine scaffold_34 . exon 230712 231252 . - . ID=Physo134823.1;Parent=Physo134823;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 235133 235642 . - . ID=Physo134824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340060;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 235133 235642 . - . ID=Physo134824;Parent=Physo134824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 235133 235642 . - 0 ID=Physo134824;Parent=Physo134824;rank=1 scaffold_34 . exon 235133 235642 . - . ID=Physo134824.1;Parent=Physo134824;constitutive=1;rank=1 scaffold_34 . repeat_region 245479 245520 . ? . description=trf scaffold_34 . repeat_region 246440 246447 . ? . description=dust scaffold_34 ensembl protein_coding_gene 240454 244905 . + . ID=Physo134825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340061;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 240454 244905 . + . ID=Physo134825;Parent=Physo134825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 240454 243958 . + . ID=Physo134825.1;Parent=Physo134825;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 242605 243207 . + 0 ID=Physo134825;Parent=Physo134825;rank=1 scaffold_34 . exon 244427 244905 . + . ID=Physo134825.2;Parent=Physo134825;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_34 ensembl protein_coding_gene 246737 247151 . + . ID=Physo134827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340063;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 246737 247151 . + . ID=Physo134827;Parent=Physo134827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 246737 247117 . + 0 ID=Physo134827;Parent=Physo134827;rank=1 scaffold_34 . exon 246737 247151 . + . ID=Physo134827.1;Parent=Physo134827;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 247205 250536 . - . ID=Physo134828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340064;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 247205 250536 . - . ID=Physo134828;Parent=Physo134828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 247205 248229 . - 0 ID=Physo134828;Parent=Physo134828;rank=5 scaffold_34 . exon 247205 248229 . - . ID=Physo134828.5;Parent=Physo134828;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 . CDS 248301 248558 . - 0 ID=Physo134828;Parent=Physo134828;rank=4 scaffold_34 . exon 248301 248558 . - . ID=Physo134828.4;Parent=Physo134828;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 248628 249226 . - 0 ID=Physo134828;Parent=Physo134828;rank=3 scaffold_34 . exon 248628 249226 . - . ID=Physo134828.3;Parent=Physo134828;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 249299 249462 . - 0 ID=Physo134828;Parent=Physo134828;rank=2 scaffold_34 . exon 249299 249462 . - . ID=Physo134828.2;Parent=Physo134828;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 249634 250536 . - 0 ID=Physo134828;Parent=Physo134828;rank=1 scaffold_34 . exon 249634 250536 . - . ID=Physo134828.1;Parent=Physo134828;constitutive=1;rank=1 scaffold_34 . biological_region 250298 250304 0.999 + . logic_name=eponine scaffold_34 . biological_region 250339 250342 0.999 - . logic_name=eponine scaffold_34 . biological_region 250385 250394 0.999 - . logic_name=eponine scaffold_34 . biological_region 250443 250448 0.999 + . logic_name=eponine scaffold_34 . biological_region 250555 250555 0.999 - . logic_name=eponine scaffold_34 . biological_region 252354 252358 0.999 + . logic_name=eponine scaffold_34 . biological_region 252406 252408 0.999 + . logic_name=eponine scaffold_34 . biological_region 252423 252431 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 256098 257576 . - . ID=Physo108809;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340009;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 256098 257576 . - . ID=Physo108809;Parent=Physo108809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 256098 257576 . - 0 ID=Physo108809;Parent=Physo108809;rank=1 scaffold_34 . exon 256098 257576 . - . ID=Physo108809.1;Parent=Physo108809;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 251152 252141 . + . ID=Physo134829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340065;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 251152 252141 . + . ID=Physo134829;Parent=Physo134829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 251152 252141 . + 0 ID=Physo134829;Parent=Physo134829;rank=1 scaffold_34 . exon 251152 252141 . + . ID=Physo134829.1;Parent=Physo134829;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 252553 253302 . + . ID=Physo134830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340066;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 252553 253302 . + . ID=Physo134830;Parent=Physo134830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 252553 252615 . + 0 ID=Physo134830;Parent=Physo134830;rank=1 scaffold_34 . exon 252553 252615 . + . ID=Physo134830.1;Parent=Physo134830;constitutive=1;rank=1 scaffold_34 . CDS 252686 252865 . + 0 ID=Physo134830;Parent=Physo134830;rank=2 scaffold_34 . exon 252686 252865 . + . ID=Physo134830.2;Parent=Physo134830;constitutive=1;rank=2 scaffold_34 . CDS 252931 253302 . + 0 ID=Physo134830;Parent=Physo134830;rank=3 scaffold_34 . exon 252931 253302 . + . ID=Physo134830.3;Parent=Physo134830;constitutive=1;rank=3 scaffold_34 ensembl protein_coding_gene 258388 262404 . - . ID=Physo157072;biotype=protein_coding;external_name=C_scaffold_34000036;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 258388 262404 . - . ID=Physo157072;Parent=Physo157072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 258388 258636 . - 0 ID=Physo157072;Parent=Physo157072;rank=6 scaffold_34 . exon 258388 258636 . - . ID=Physo157072.6;Parent=Physo157072;constitutive=1;rank=6 scaffold_34 . CDS 258704 259056 . - 0 ID=Physo157072;Parent=Physo157072;rank=5 scaffold_34 . exon 258704 259056 . - . ID=Physo157072.5;Parent=Physo157072;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 . CDS 259081 259726 . - 0 ID=Physo157072;Parent=Physo157072;rank=4 scaffold_34 . exon 259081 259726 . - . ID=Physo157072.4;Parent=Physo157072;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_34 . CDS 259760 259897 . - 0 ID=Physo157072;Parent=Physo157072;rank=3 scaffold_34 . exon 259760 259897 . - . ID=Physo157072.3;Parent=Physo157072;constitutive=1;rank=3 scaffold_34 . CDS 259981 260727 . - 0 ID=Physo157072;Parent=Physo157072;rank=2 scaffold_34 . CDS 260806 262404 . - 0 ID=Physo157072;Parent=Physo157072;rank=1 scaffold_34 . repeat_region 260874 260913 . ? . description=trf scaffold_34 . repeat_region 262278 262330 . ? . description=trf scaffold_34 . repeat_region 269375 269382 . ? . description=dust scaffold_34 ensembl protein_coding_gene 263611 265278 . + . ID=Physo134833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340069;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 263611 265278 . + . ID=Physo134833;Parent=Physo134833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 263611 263725 . + . ID=Physo134833.1;Parent=Physo134833;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_34 . CDS 263640 263725 . + 0 ID=Physo134833;Parent=Physo134833;rank=1 scaffold_34 . CDS 263798 265148 . + 0 ID=Physo134833;Parent=Physo134833;rank=2 scaffold_34 . exon 263798 265278 . + . ID=Physo134833.2;Parent=Physo134833;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 267327 268947 . + . ID=Physo134835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340071;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 267327 268947 . + . ID=Physo134835;Parent=Physo134835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 267327 268491 . + 0 ID=Physo134835;Parent=Physo134835;rank=1 scaffold_34 . exon 267327 268491 . + . ID=Physo134835.1;Parent=Physo134835;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 268535 268845 . + 0 ID=Physo134835;Parent=Physo134835;rank=2 scaffold_34 . exon 268535 268947 . + . ID=Physo134835.2;Parent=Physo134835;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_34 . exon 259981 260727 . - . ID=Physo157072.2;Parent=Physo157072;constitutive=1;rank=2 scaffold_34 . exon 260806 262404 . - . ID=Physo157072.1;Parent=Physo157072;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 265355 266924 . - . ID=Physo157074;biotype=protein_coding;external_name=C_scaffold_34000038;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 265355 266924 . - . ID=Physo157074;Parent=Physo157074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 265355 265629 . - 0 ID=Physo157074;Parent=Physo157074;rank=5 scaffold_34 . exon 265355 265629 . - . ID=Physo157074.5;Parent=Physo157074;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 . CDS 265657 265829 . - 0 ID=Physo157074;Parent=Physo157074;rank=4 scaffold_34 . exon 265657 265829 . - . ID=Physo157074.4;Parent=Physo157074;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_34 . CDS 265902 266254 . - 0 ID=Physo157074;Parent=Physo157074;rank=3 scaffold_34 . exon 265902 266254 . - . ID=Physo157074.3;Parent=Physo157074;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . CDS 266276 266583 . - 0 ID=Physo157074;Parent=Physo157074;rank=2 scaffold_34 . exon 266276 266583 . - . ID=Physo157074.2;Parent=Physo157074;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 266696 266924 . - 0 ID=Physo157074;Parent=Physo157074;rank=1 scaffold_34 . exon 266696 266924 . - . ID=Physo157074.1;Parent=Physo157074;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . biological_region 270724 270724 0.999 - . logic_name=eponine scaffold_34 . biological_region 272478 272482 0.999 + . logic_name=eponine scaffold_34 . biological_region 277140 277141 0.999 + . logic_name=eponine scaffold_34 . biological_region 277787 277788 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 270560 272059 . + . ID=Physo108810;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340010;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 270560 272059 . + . ID=Physo108810;Parent=Physo108810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 270560 272059 . + 0 ID=Physo108810;Parent=Physo108810;rank=1 scaffold_34 . exon 270560 272059 . + . ID=Physo108810.1;Parent=Physo108810;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 276851 277516 . + . ID=Physo108811;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340011;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 276851 277516 . + . ID=Physo108811;Parent=Physo108811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 276851 277516 . + . ID=Physo108811.1;Parent=Physo108811;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 276859 277431 . + 0 ID=Physo108811;Parent=Physo108811;rank=1 scaffold_34 ensembl protein_coding_gene 272331 273752 . + . ID=Physo134837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340073;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 272331 273752 . + . ID=Physo134837;Parent=Physo134837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 272331 273752 . + 0 ID=Physo134837;Parent=Physo134837;rank=1 scaffold_34 . exon 272331 273752 . + . ID=Physo134837.1;Parent=Physo134837;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 274096 276347 . - . ID=Physo134838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340074;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 274096 276347 . - . ID=Physo134838;Parent=Physo134838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 274096 274354 . - 0 ID=Physo134838;Parent=Physo134838;rank=2 scaffold_34 . exon 274096 274354 . - . ID=Physo134838.2;Parent=Physo134838;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 274426 276347 . - 0 ID=Physo134838;Parent=Physo134838;rank=1 scaffold_34 . exon 274426 276347 . - . ID=Physo134838.1;Parent=Physo134838;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 277672 278061 . + . ID=Physo134840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340076;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 277672 278061 . + . ID=Physo134840;Parent=Physo134840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 277672 278061 . + 0 ID=Physo134840;Parent=Physo134840;rank=1 scaffold_34 . exon 277672 278061 . + . ID=Physo134840.1;Parent=Physo134840;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 278259 281413 . - . ID=Physo157078;biotype=protein_coding;external_name=C_scaffold_34000042;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 278259 281413 . - . ID=Physo157078;Parent=Physo157078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 278259 278741 . - 0 ID=Physo157078;Parent=Physo157078;rank=9 scaffold_34 . exon 278259 278741 . - . ID=Physo157078.9;Parent=Physo157078;constitutive=1;rank=9 scaffold_34 . CDS 278822 278870 . - 0 ID=Physo157078;Parent=Physo157078;rank=8 scaffold_34 . exon 278822 278870 . - . ID=Physo157078.8;Parent=Physo157078;constitutive=1;ensembl_phase=2;rank=8 scaffold_34 . CDS 279030 279236 . - 0 ID=Physo157078;Parent=Physo157078;rank=7 scaffold_34 . exon 279030 279236 . - . ID=Physo157078.7;Parent=Physo157078;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_34 . CDS 279577 279614 . - 0 ID=Physo157078;Parent=Physo157078;rank=6 scaffold_34 . exon 279577 279614 . - . ID=Physo157078.6;Parent=Physo157078;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_34 . CDS 279647 279802 . - 0 ID=Physo157078;Parent=Physo157078;rank=5 scaffold_34 . exon 279647 279802 . - . ID=Physo157078.5;Parent=Physo157078;constitutive=1;rank=5 scaffold_34 . CDS 279870 280159 . - 0 ID=Physo157078;Parent=Physo157078;rank=4 scaffold_34 . exon 279870 280159 . - . ID=Physo157078.4;Parent=Physo157078;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 280196 280430 . - 0 ID=Physo157078;Parent=Physo157078;rank=3 scaffold_34 . CDS 280520 280663 . - 0 ID=Physo157078;Parent=Physo157078;rank=2 scaffold_34 . CDS 280874 281413 . - 0 ID=Physo157078;Parent=Physo157078;rank=1 scaffold_34 ensembl protein_coding_gene 289155 291094 . - . ID=Physo108812;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340012;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 289155 291094 . - . ID=Physo108812;Parent=Physo108812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 289155 289326 . - . ID=Physo108812.5;Parent=Physo108812;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_34 . CDS 289267 289326 . - 0 ID=Physo108812;Parent=Physo108812;rank=5 scaffold_34 . CDS 289410 289582 . - 0 ID=Physo108812;Parent=Physo108812;rank=4 scaffold_34 . exon 289410 289582 . - . ID=Physo108812.4;Parent=Physo108812;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 289660 290424 . - 0 ID=Physo108812;Parent=Physo108812;rank=3 scaffold_34 . exon 289660 290424 . - . ID=Physo108812.3;Parent=Physo108812;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 290503 290718 . - 0 ID=Physo108812;Parent=Physo108812;rank=2 scaffold_34 . CDS 290811 291081 . - 0 ID=Physo108812;Parent=Physo108812;rank=1 scaffold_34 ensembl protein_coding_gene 282999 285551 . - . ID=Physo134843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340079;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 282999 285551 . - . ID=Physo134843;Parent=Physo134843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 282999 285551 . - 0 ID=Physo134843;Parent=Physo134843;rank=1 scaffold_34 . exon 282999 285551 . - . ID=Physo134843.1;Parent=Physo134843;constitutive=1;rank=1 scaffold_34 . exon 280196 280430 . - . ID=Physo157078.3;Parent=Physo157078;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_34 . exon 280520 280663 . - . ID=Physo157078.2;Parent=Physo157078;constitutive=1;rank=2 scaffold_34 . exon 280874 281413 . - . ID=Physo157078.1;Parent=Physo157078;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 281801 282890 . + . ID=Physo157079;biotype=protein_coding;external_name=C_scaffold_34000043;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 281801 282890 . + . ID=Physo157079;Parent=Physo157079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 281801 281833 . + 0 ID=Physo157079;Parent=Physo157079;rank=1 scaffold_34 . exon 281801 281833 . + . ID=Physo157079.1;Parent=Physo157079;constitutive=1;rank=1 scaffold_34 . CDS 281890 282024 . + 0 ID=Physo157079;Parent=Physo157079;rank=2 scaffold_34 . exon 281890 282024 . + . ID=Physo157079.2;Parent=Physo157079;constitutive=1;rank=2 scaffold_34 . CDS 282097 282611 . + 0 ID=Physo157079;Parent=Physo157079;rank=3 scaffold_34 . exon 282097 282611 . + . ID=Physo157079.3;Parent=Physo157079;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . CDS 282633 282786 . + 0 ID=Physo157079;Parent=Physo157079;rank=4 scaffold_34 . exon 282633 282786 . + . ID=Physo157079.4;Parent=Physo157079;constitutive=1;ensembl_phase=2;rank=4 scaffold_34 . CDS 282882 282890 . + 0 ID=Physo157079;Parent=Physo157079;rank=5 scaffold_34 . exon 282882 282890 . + . ID=Physo157079.5;Parent=Physo157079;constitutive=1;rank=5 scaffold_34 . biological_region 290815 290818 0.999 + . logic_name=eponine scaffold_34 . biological_region 290934 290944 0.999 + . logic_name=eponine scaffold_34 . biological_region 290963 290963 0.999 + . logic_name=eponine scaffold_34 . biological_region 290974 290981 0.999 + . logic_name=eponine scaffold_34 . biological_region 291000 291004 0.999 + . logic_name=eponine scaffold_34 . biological_region 291260 291263 0.999 + . logic_name=eponine scaffold_34 . biological_region 291476 291480 0.999 - . logic_name=eponine scaffold_34 . repeat_region 293032 293059 . ? . description=trf scaffold_34 . repeat_region 293032 293086 . ? . description=dust scaffold_34 . repeat_region 293032 293086 . + . description=(ATG)n scaffold_34 . biological_region 295475 295479 0.999 - . logic_name=eponine scaffold_34 . biological_region 296248 296254 0.999 + . logic_name=eponine scaffold_34 . biological_region 296278 296281 0.999 - . logic_name=eponine scaffold_34 . biological_region 296567 296567 0.999 + . logic_name=eponine scaffold_34 . biological_region 297085 297088 0.999 - . logic_name=eponine scaffold_34 . biological_region 297105 297109 0.999 - . logic_name=eponine scaffold_34 . biological_region 297185 297189 0.999 - . logic_name=eponine scaffold_34 . repeat_region 298613 298636 . ? . description=trf scaffold_34 . biological_region 299753 299756 0.999 + . logic_name=eponine scaffold_34 . biological_region 299810 299810 0.999 - . logic_name=eponine scaffold_34 . exon 290503 290718 . - . ID=Physo108812.2;Parent=Physo108812;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . exon 290811 291094 . - . ID=Physo108812.1;Parent=Physo108812;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 298165 298710 . - . ID=Physo108813;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340013;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 298165 298710 . - . ID=Physo108813;Parent=Physo108813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 298165 298710 . - . ID=Physo108813.1;Parent=Physo108813;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 298331 298684 . - 0 ID=Physo108813;Parent=Physo108813;rank=1 scaffold_34 ensembl protein_coding_gene 299321 300470 . - . ID=Physo108814;biotype=protein_coding;description=G protein alpha subunit [Source:UniProtKB/TrEMBL%3BAcc:B2ZFL2];external_name=GPA1;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 299321 300470 . - . ID=Physo108814;Parent=Physo108814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 299321 300217 . - 0 ID=Physo108814;Parent=Physo108814;rank=2 scaffold_34 . exon 299321 300217 . - . ID=Physo108814.2;Parent=Physo108814;constitutive=1;rank=2 scaffold_34 . CDS 300300 300470 . - 0 ID=Physo108814;Parent=Physo108814;rank=1 scaffold_34 ensembl protein_coding_gene 295514 296990 . - . ID=Physo134846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340082;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 295514 296990 . - . ID=Physo134846;Parent=Physo134846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 295514 295848 . - 0 ID=Physo134846;Parent=Physo134846;rank=3 scaffold_34 . exon 295514 295848 . - . ID=Physo134846.3;Parent=Physo134846;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 295935 296790 . - 0 ID=Physo134846;Parent=Physo134846;rank=2 scaffold_34 . exon 295935 296790 . - . ID=Physo134846.2;Parent=Physo134846;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . CDS 296904 296990 . - 0 ID=Physo134846;Parent=Physo134846;rank=1 scaffold_34 . exon 296904 296990 . - . ID=Physo134846.1;Parent=Physo134846;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 291290 294096 . + . ID=Physo157082;biotype=protein_coding;external_name=C_scaffold_34000046;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 291290 294096 . + . ID=Physo157082;Parent=Physo157082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 291290 291520 . + 0 ID=Physo157082;Parent=Physo157082;rank=1 scaffold_34 . exon 291290 291520 . + . ID=Physo157082.1;Parent=Physo157082;constitutive=1;rank=1 scaffold_34 . CDS 291603 291710 . + 0 ID=Physo157082;Parent=Physo157082;rank=2 scaffold_34 . exon 291603 291710 . + . ID=Physo157082.2;Parent=Physo157082;constitutive=1;rank=2 scaffold_34 . CDS 291790 292031 . + 0 ID=Physo157082;Parent=Physo157082;rank=3 scaffold_34 . exon 291790 292031 . + . ID=Physo157082.3;Parent=Physo157082;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . CDS 292152 292155 . + 0 ID=Physo157082;Parent=Physo157082;rank=4 scaffold_34 . exon 292152 292155 . + . ID=Physo157082.4;Parent=Physo157082;constitutive=1;ensembl_phase=2;rank=4 scaffold_34 . CDS 292241 292330 . + 0 ID=Physo157082;Parent=Physo157082;rank=5 scaffold_34 . exon 292241 292330 . + . ID=Physo157082.5;Parent=Physo157082;constitutive=1;rank=5 scaffold_34 . CDS 292404 292529 . + 0 ID=Physo157082;Parent=Physo157082;rank=6 scaffold_34 . exon 292404 292529 . + . ID=Physo157082.6;Parent=Physo157082;constitutive=1;rank=6 scaffold_34 . CDS 292595 292838 . + 0 ID=Physo157082;Parent=Physo157082;rank=7 scaffold_34 . exon 292595 292838 . + . ID=Physo157082.7;Parent=Physo157082;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_34 . CDS 293208 293312 . + 0 ID=Physo157082;Parent=Physo157082;rank=8 scaffold_34 . exon 293208 293312 . + . ID=Physo157082.8;Parent=Physo157082;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_34 . CDS 293401 293491 . + 0 ID=Physo157082;Parent=Physo157082;rank=9 scaffold_34 . exon 293401 293491 . + . ID=Physo157082.9;Parent=Physo157082;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_34 . CDS 293554 293788 . + 0 ID=Physo157082;Parent=Physo157082;rank=10 scaffold_34 . exon 293554 293788 . + . ID=Physo157082.10;Parent=Physo157082;constitutive=1;ensembl_phase=2;rank=10 scaffold_34 . CDS 294000 294009 . + 0 ID=Physo157082;Parent=Physo157082;rank=11 scaffold_34 . exon 294000 294009 . + . ID=Physo157082.11;Parent=Physo157082;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_34 . CDS 294077 294096 . + 0 ID=Physo157082;Parent=Physo157082;rank=12 scaffold_34 . exon 294077 294096 . + . ID=Physo157082.12;Parent=Physo157082;constitutive=1;ensembl_phase=1;rank=12 scaffold_34 . exon 300300 300470 . - . ID=Physo108814.1;Parent=Physo108814;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 301330 301794 . + . ID=Physo116385;biotype=protein_coding;external_name=estExt_Genewise1.C_340017;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 301330 301794 . + . ID=Physo116385;Parent=Physo116385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 301330 301461 . + . ID=Physo116385.1;Parent=Physo116385;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_34 . CDS 301331 301461 . + 0 ID=Physo116385;Parent=Physo116385;rank=1 scaffold_34 . CDS 301510 301651 . + 0 ID=Physo116385;Parent=Physo116385;rank=2 scaffold_34 . exon 301510 301794 . + . ID=Physo116385.2;Parent=Physo116385;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 301946 304221 . - . ID=Physo116388;biotype=protein_coding;external_name=estExt_Genewise1.C_340020;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 301946 304221 . - . ID=Physo116388;Parent=Physo116388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 301946 302061 . - 0 ID=Physo116388;Parent=Physo116388;rank=7 scaffold_34 . exon 301946 302061 . - . ID=Physo116388.7;Parent=Physo116388;constitutive=1;ensembl_phase=1;rank=7 scaffold_34 . CDS 302148 302232 . - 0 ID=Physo116388;Parent=Physo116388;rank=6 scaffold_34 . exon 302148 302232 . - . ID=Physo116388.6;Parent=Physo116388;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_34 . CDS 302310 302930 . - 0 ID=Physo116388;Parent=Physo116388;rank=5 scaffold_34 . exon 302310 302930 . - . ID=Physo116388.5;Parent=Physo116388;constitutive=1;rank=5 scaffold_34 . CDS 303000 303200 . - 0 ID=Physo116388;Parent=Physo116388;rank=4 scaffold_34 . exon 303000 303200 . - . ID=Physo116388.4;Parent=Physo116388;constitutive=1;rank=4 scaffold_34 . CDS 303285 303341 . - 0 ID=Physo116388;Parent=Physo116388;rank=3 scaffold_34 . exon 303285 303341 . - . ID=Physo116388.3;Parent=Physo116388;constitutive=1;rank=3 scaffold_34 . CDS 303418 303654 . - 0 ID=Physo116388;Parent=Physo116388;rank=2 scaffold_34 . exon 303418 303654 . - . ID=Physo116388.2;Parent=Physo116388;constitutive=1;rank=2 scaffold_34 . CDS 303736 304221 . - 0 ID=Physo116388;Parent=Physo116388;rank=1 scaffold_34 . exon 303736 304221 . - . ID=Physo116388.1;Parent=Physo116388;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 304421 305573 . + . ID=Physo134850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340086;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 304421 305573 . + . ID=Physo134850;Parent=Physo134850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 304421 305573 . + . ID=Physo134850.1;Parent=Physo134850;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 304599 305528 . + 0 ID=Physo134850;Parent=Physo134850;rank=1 scaffold_34 ensembl protein_coding_gene 305616 306014 . + . ID=Physo134851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340087;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 305616 306014 . + . ID=Physo134851;Parent=Physo134851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 305616 306014 . + 0 ID=Physo134851;Parent=Physo134851;rank=1 scaffold_34 . exon 305616 306014 . + . ID=Physo134851.1;Parent=Physo134851;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 306225 306845 . + . ID=Physo157084;biotype=protein_coding;external_name=C_scaffold_34000048;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 306225 306845 . + . ID=Physo157084;Parent=Physo157084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 306225 306845 . + 0 ID=Physo157084;Parent=Physo157084;rank=1 scaffold_34 . exon 306225 306845 . + . ID=Physo157084.1;Parent=Physo157084;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 307088 309498 . - . ID=Physo157085;biotype=protein_coding;external_name=C_scaffold_34000049;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 307088 309498 . - . ID=Physo157085;Parent=Physo157085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 307088 307245 . - 0 ID=Physo157085;Parent=Physo157085;rank=10 scaffold_34 . exon 307088 307245 . - . ID=Physo157085.10;Parent=Physo157085;constitutive=1;ensembl_phase=1;rank=10 scaffold_34 . CDS 307334 307382 . - 0 ID=Physo157085;Parent=Physo157085;rank=9 scaffold_34 . exon 307334 307382 . - . ID=Physo157085.9;Parent=Physo157085;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_34 . CDS 307460 307505 . - 0 ID=Physo157085;Parent=Physo157085;rank=8 scaffold_34 . exon 307460 307505 . - . ID=Physo157085.8;Parent=Physo157085;constitutive=1;ensembl_phase=2;rank=8 scaffold_34 . CDS 307577 308004 . - 0 ID=Physo157085;Parent=Physo157085;rank=7 scaffold_34 . exon 307577 308004 . - . ID=Physo157085.7;Parent=Physo157085;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_34 . CDS 308081 308149 . - 0 ID=Physo157085;Parent=Physo157085;rank=6 scaffold_34 . exon 308081 308149 . - . ID=Physo157085.6;Parent=Physo157085;constitutive=1;rank=6 scaffold_34 . CDS 308229 308411 . - 0 ID=Physo157085;Parent=Physo157085;rank=5 scaffold_34 . exon 308229 308411 . - . ID=Physo157085.5;Parent=Physo157085;constitutive=1;rank=5 scaffold_34 . CDS 308478 308695 . - 0 ID=Physo157085;Parent=Physo157085;rank=4 scaffold_34 . exon 308478 308695 . - . ID=Physo157085.4;Parent=Physo157085;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 308771 308878 . - 0 ID=Physo157085;Parent=Physo157085;rank=3 scaffold_34 . exon 308771 308878 . - . ID=Physo157085.3;Parent=Physo157085;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 308967 309063 . - 0 ID=Physo157085;Parent=Physo157085;rank=2 scaffold_34 . exon 308967 309063 . - . ID=Physo157085.2;Parent=Physo157085;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . CDS 309106 309498 . - 0 ID=Physo157085;Parent=Physo157085;rank=1 scaffold_34 . exon 309106 309498 . - . ID=Physo157085.1;Parent=Physo157085;constitutive=1;rank=1 scaffold_34 . biological_region 311609 311613 0.999 + . logic_name=eponine scaffold_34 . biological_region 313858 313858 0.999 + . logic_name=eponine scaffold_34 . biological_region 314956 314957 0.999 - . logic_name=eponine scaffold_34 . repeat_region 316969 316979 . ? . description=dust scaffold_34 ensembl protein_coding_gene 310011 310839 . - . ID=Physo108815;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340015;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 310011 310839 . - . ID=Physo108815;Parent=Physo108815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 310011 310739 . - 0 ID=Physo108815;Parent=Physo108815;rank=1 scaffold_34 . exon 310011 310739 . - . ID=Physo108815.2;Parent=Physo108815;constitutive=1;rank=2 scaffold_34 . exon 310812 310839 . - . ID=Physo108815.1;Parent=Physo108815;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 312704 315103 . - . ID=Physo134855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340091;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 312704 315103 . - . ID=Physo134855;Parent=Physo134855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 312704 313659 . - 0 ID=Physo134855;Parent=Physo134855;rank=3 scaffold_34 . exon 312704 313659 . - . ID=Physo134855.3;Parent=Physo134855;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 313849 314523 . - 0 ID=Physo134855;Parent=Physo134855;rank=2 scaffold_34 . exon 313849 314523 . - . ID=Physo134855.2;Parent=Physo134855;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 314677 315103 . - 0 ID=Physo134855;Parent=Physo134855;rank=1 scaffold_34 . exon 314677 315103 . - . ID=Physo134855.1;Parent=Physo134855;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 317100 318453 . - . ID=Physo134856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340092;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 317100 318453 . - . ID=Physo134856;Parent=Physo134856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 317100 317827 . - 0 ID=Physo134856;Parent=Physo134856;rank=3 scaffold_34 . exon 317100 317827 . - . ID=Physo134856.3;Parent=Physo134856;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 317919 318313 . - 0 ID=Physo134856;Parent=Physo134856;rank=2 scaffold_34 . exon 317919 318313 . - . ID=Physo134856.2;Parent=Physo134856;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 318395 318453 . - 0 ID=Physo134856;Parent=Physo134856;rank=1 scaffold_34 . exon 318395 318453 . - . ID=Physo134856.1;Parent=Physo134856;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 318624 320130 . - . ID=Physo134857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340093;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 318624 320130 . - . ID=Physo134857;Parent=Physo134857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 318624 318966 . - 0 ID=Physo134857;Parent=Physo134857;rank=5 scaffold_34 . exon 318624 318966 . - . ID=Physo134857.7;Parent=Physo134857;constitutive=1;ensembl_phase=2;rank=7 scaffold_34 . CDS 319041 319104 . - 0 ID=Physo134857;Parent=Physo134857;rank=4 scaffold_34 . exon 319041 319104 . - . ID=Physo134857.6;Parent=Physo134857;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_34 . CDS 319163 319355 . - 0 ID=Physo134857;Parent=Physo134857;rank=3 scaffold_34 . exon 319163 319355 . - . ID=Physo134857.5;Parent=Physo134857;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_34 . CDS 319423 319622 . - 0 ID=Physo134857;Parent=Physo134857;rank=2 scaffold_34 . exon 319423 319622 . - . ID=Physo134857.4;Parent=Physo134857;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 319705 319786 . - 0 ID=Physo134857;Parent=Physo134857;rank=1 scaffold_34 . exon 319705 319801 . - . ID=Physo134857.3;Parent=Physo134857;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=3 scaffold_34 . exon 319876 319950 . - . ID=Physo134857.2;Parent=Physo134857;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_34 . exon 320031 320130 . - . ID=Physo134857.1;Parent=Physo134857;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 321446 322195 . - . ID=Physo134858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340094;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 321446 322195 . - . ID=Physo134858;Parent=Physo134858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 321446 322195 . - 0 ID=Physo134858;Parent=Physo134858;rank=1 scaffold_34 . exon 321446 322195 . - . ID=Physo134858.1;Parent=Physo134858;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 322743 324464 . + . ID=Physo134859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340095;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 322743 324464 . + . ID=Physo134859;Parent=Physo134859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 322743 322976 . + 0 ID=Physo134859;Parent=Physo134859;rank=1 scaffold_34 . exon 322743 322976 . + . ID=Physo134859.1;Parent=Physo134859;constitutive=1;rank=1 scaffold_34 . CDS 323053 323162 . + 0 ID=Physo134859;Parent=Physo134859;rank=2 scaffold_34 . exon 323053 323162 . + . ID=Physo134859.2;Parent=Physo134859;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 323233 323506 . + 0 ID=Physo134859;Parent=Physo134859;rank=3 scaffold_34 . exon 323233 323506 . + . ID=Physo134859.3;Parent=Physo134859;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 323584 323694 . + 0 ID=Physo134859;Parent=Physo134859;rank=4 scaffold_34 . exon 323584 323694 . + . ID=Physo134859.4;Parent=Physo134859;constitutive=1;rank=4 scaffold_34 . CDS 323762 324052 . + 0 ID=Physo134859;Parent=Physo134859;rank=5 scaffold_34 . exon 323762 324052 . + . ID=Physo134859.5;Parent=Physo134859;constitutive=1;rank=5 scaffold_34 . CDS 324127 324213 . + 0 ID=Physo134859;Parent=Physo134859;rank=6 scaffold_34 . exon 324127 324213 . + . ID=Physo134859.6;Parent=Physo134859;constitutive=1;rank=6 scaffold_34 . CDS 324297 324464 . + 0 ID=Physo134859;Parent=Physo134859;rank=7 scaffold_34 . exon 324297 324464 . + . ID=Physo134859.7;Parent=Physo134859;constitutive=1;rank=7 scaffold_34 ensembl protein_coding_gene 325617 327408 . - . ID=Physo134860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340096;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 325617 327408 . - . ID=Physo134860;Parent=Physo134860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 325617 325661 . - 0 ID=Physo134860;Parent=Physo134860;rank=4 scaffold_34 . exon 325617 325661 . - . ID=Physo134860.4;Parent=Physo134860;constitutive=1;rank=4 scaffold_34 . CDS 325933 326576 . - 0 ID=Physo134860;Parent=Physo134860;rank=3 scaffold_34 . exon 325933 326576 . - . ID=Physo134860.3;Parent=Physo134860;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 326718 326854 . - 0 ID=Physo134860;Parent=Physo134860;rank=2 scaffold_34 . exon 326718 326854 . - . ID=Physo134860.2;Parent=Physo134860;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 327110 327408 . - 0 ID=Physo134860;Parent=Physo134860;rank=1 scaffold_34 . exon 327110 327408 . - . ID=Physo134860.1;Parent=Physo134860;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 327662 328992 . - . ID=Physo157086;biotype=protein_coding;external_name=C_scaffold_34000050;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 327662 328992 . - . ID=Physo157086;Parent=Physo157086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 327662 328028 . - 0 ID=Physo157086;Parent=Physo157086;rank=5 scaffold_34 . exon 327662 328028 . - . ID=Physo157086.5;Parent=Physo157086;constitutive=1;ensembl_phase=2;rank=5 scaffold_34 . CDS 328125 328227 . - 0 ID=Physo157086;Parent=Physo157086;rank=4 scaffold_34 . exon 328125 328227 . - . ID=Physo157086.4;Parent=Physo157086;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_34 . CDS 328297 328357 . - 0 ID=Physo157086;Parent=Physo157086;rank=3 scaffold_34 . exon 328297 328357 . - . ID=Physo157086.3;Parent=Physo157086;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_34 . CDS 328438 328685 . - 0 ID=Physo157086;Parent=Physo157086;rank=2 scaffold_34 . exon 328438 328685 . - . ID=Physo157086.2;Parent=Physo157086;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 328773 328992 . - 0 ID=Physo157086;Parent=Physo157086;rank=1 scaffold_34 . exon 328773 328992 . - . ID=Physo157086.1;Parent=Physo157086;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 329305 331650 . + . ID=Physo157088;biotype=protein_coding;external_name=C_scaffold_34000052;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 329305 331650 . + . ID=Physo157088;Parent=Physo157088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 329305 329482 . + . ID=Physo157088.1;Parent=Physo157088;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 329306 329482 . + 0 ID=Physo157088;Parent=Physo157088;rank=1 scaffold_34 . CDS 329568 329891 . + 0 ID=Physo157088;Parent=Physo157088;rank=2 scaffold_34 . exon 329568 329891 . + . ID=Physo157088.2;Parent=Physo157088;constitutive=1;rank=2 scaffold_34 . CDS 329981 330162 . + 0 ID=Physo157088;Parent=Physo157088;rank=3 scaffold_34 . CDS 330202 330569 . + 0 ID=Physo157088;Parent=Physo157088;rank=4 scaffold_34 . CDS 330847 331070 . + 0 ID=Physo157088;Parent=Physo157088;rank=5 scaffold_34 . CDS 331138 331650 . + 0 ID=Physo157088;Parent=Physo157088;rank=6 scaffold_34 . repeat_region 332309 332335 . ? . description=trf scaffold_34 . biological_region 332469 332472 0.999 - . logic_name=eponine scaffold_34 . biological_region 335103 335104 0.999 - . logic_name=eponine scaffold_34 . biological_region 335450 335453 0.999 + . logic_name=eponine scaffold_34 . biological_region 335652 335655 0.999 + . logic_name=eponine scaffold_34 . biological_region 336390 336396 0.999 + . logic_name=eponine scaffold_34 . biological_region 336681 336687 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 336295 337902 . + . ID=Physo108817;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340017;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 336295 337902 . + . ID=Physo108817;Parent=Physo108817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 336295 337779 . + 0 ID=Physo108817;Parent=Physo108817;rank=1 scaffold_34 . exon 336295 337902 . + . ID=Physo108817.1;Parent=Physo108817;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 334880 336022 . - . ID=Physo116401;biotype=protein_coding;external_name=estExt_Genewise1.C_340033;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 334880 336022 . - . ID=Physo116401;Parent=Physo116401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 334880 336022 . - 0 ID=Physo116401;Parent=Physo116401;rank=1 scaffold_34 . exon 334880 336022 . - . ID=Physo116401.1;Parent=Physo116401;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 332537 334516 . + . ID=Physo134863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340099;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 332537 334516 . + . ID=Physo134863;Parent=Physo134863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 332537 334516 . + 0 ID=Physo134863;Parent=Physo134863;rank=1 scaffold_34 . exon 332537 334516 . + . ID=Physo134863.1;Parent=Physo134863;constitutive=1;rank=1 scaffold_34 . exon 329981 330162 . + . ID=Physo157088.3;Parent=Physo157088;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . exon 330202 330569 . + . ID=Physo157088.4;Parent=Physo157088;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_34 . exon 330847 331070 . + . ID=Physo157088.5;Parent=Physo157088;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 . exon 331138 331650 . + . ID=Physo157088.6;Parent=Physo157088;constitutive=1;rank=6 scaffold_34 ensembl protein_coding_gene 331852 332116 . - . ID=Physo157089;biotype=protein_coding;external_name=C_scaffold_34000053;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 331852 332116 . - . ID=Physo157089;Parent=Physo157089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 331852 331953 . - 0 ID=Physo157089;Parent=Physo157089;rank=2 scaffold_34 . exon 331852 331953 . - . ID=Physo157089.2;Parent=Physo157089;constitutive=1;rank=2 scaffold_34 . CDS 332024 332116 . - 0 ID=Physo157089;Parent=Physo157089;rank=1 scaffold_34 . exon 332024 332116 . - . ID=Physo157089.1;Parent=Physo157089;constitutive=1;rank=1 scaffold_34 . repeat_region 343406 343413 . ? . description=dust scaffold_34 ensembl protein_coding_gene 341824 344919 . - . ID=Physo157091;biotype=protein_coding;external_name=C_scaffold_34000055;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 341824 344919 . - . ID=Physo157091;Parent=Physo157091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 341824 341838 . - 0 ID=Physo157091;Parent=Physo157091;rank=8 scaffold_34 . exon 341824 341838 . - . ID=Physo157091.8;Parent=Physo157091;constitutive=1;rank=8 scaffold_34 . CDS 341913 341925 . - 0 ID=Physo157091;Parent=Physo157091;rank=7 scaffold_34 . exon 341913 341925 . - . ID=Physo157091.7;Parent=Physo157091;constitutive=1;ensembl_phase=2;rank=7 scaffold_34 . CDS 342090 342280 . - 0 ID=Physo157091;Parent=Physo157091;rank=6 scaffold_34 . exon 342090 342280 . - . ID=Physo157091.6;Parent=Physo157091;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_34 . CDS 342359 342562 . - 0 ID=Physo157091;Parent=Physo157091;rank=5 scaffold_34 . exon 342359 342562 . - . ID=Physo157091.5;Parent=Physo157091;constitutive=1;rank=5 scaffold_34 . CDS 342638 343072 . - 0 ID=Physo157091;Parent=Physo157091;rank=4 scaffold_34 . exon 342638 343072 . - . ID=Physo157091.4;Parent=Physo157091;constitutive=1;rank=4 scaffold_34 . CDS 343097 343260 . - 0 ID=Physo157091;Parent=Physo157091;rank=3 scaffold_34 . exon 343097 343260 . - . ID=Physo157091.3;Parent=Physo157091;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 343521 343606 . - 0 ID=Physo157091;Parent=Physo157091;rank=2 scaffold_34 . exon 343521 343606 . - . ID=Physo157091.2;Parent=Physo157091;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 343847 344919 . - 0 ID=Physo157091;Parent=Physo157091;rank=1 scaffold_34 . exon 343847 344919 . - . ID=Physo157091.1;Parent=Physo157091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 345193 345849 . + . ID=Physo157092;biotype=protein_coding;external_name=C_scaffold_34000056;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 345193 345849 . + . ID=Physo157092;Parent=Physo157092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 345193 345539 . + 0 ID=Physo157092;Parent=Physo157092;rank=1 scaffold_34 . exon 345193 345539 . + . ID=Physo157092.1;Parent=Physo157092;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 345638 345754 . + 0 ID=Physo157092;Parent=Physo157092;rank=2 scaffold_34 . exon 345638 345754 . + . ID=Physo157092.2;Parent=Physo157092;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_34 . CDS 345840 345849 . + 0 ID=Physo157092;Parent=Physo157092;rank=3 scaffold_34 . exon 345840 345849 . + . ID=Physo157092.3;Parent=Physo157092;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 ensembl protein_coding_gene 346773 353973 . + . ID=Physo157093;biotype=protein_coding;external_name=C_scaffold_34000057;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 346773 353973 . + . ID=Physo157093;Parent=Physo157093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 346773 346897 . + 0 ID=Physo157093;Parent=Physo157093;rank=1 scaffold_34 . exon 346773 346897 . + . ID=Physo157093.1;Parent=Physo157093;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 347391 347644 . + 0 ID=Physo157093;Parent=Physo157093;rank=2 scaffold_34 . exon 347391 347644 . + . ID=Physo157093.2;Parent=Physo157093;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 347672 347843 . + 0 ID=Physo157093;Parent=Physo157093;rank=3 scaffold_34 . exon 347672 347843 . + . ID=Physo157093.3;Parent=Physo157093;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_34 . CDS 348000 348102 . + 0 ID=Physo157093;Parent=Physo157093;rank=4 scaffold_34 . exon 348000 348102 . + . ID=Physo157093.4;Parent=Physo157093;constitutive=1;ensembl_phase=2;rank=4 scaffold_34 . CDS 348168 348245 . + 0 ID=Physo157093;Parent=Physo157093;rank=5 scaffold_34 . exon 348168 348245 . + . ID=Physo157093.5;Parent=Physo157093;constitutive=1;rank=5 scaffold_34 . CDS 348327 348576 . + 0 ID=Physo157093;Parent=Physo157093;rank=6 scaffold_34 . exon 348327 348576 . + . ID=Physo157093.6;Parent=Physo157093;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_34 . CDS 348651 348754 . + 0 ID=Physo157093;Parent=Physo157093;rank=7 scaffold_34 . exon 348651 348754 . + . ID=Physo157093.7;Parent=Physo157093;constitutive=1;ensembl_phase=1;rank=7 scaffold_34 . CDS 348867 348944 . + 0 ID=Physo157093;Parent=Physo157093;rank=8 scaffold_34 . exon 348867 348944 . + . ID=Physo157093.8;Parent=Physo157093;constitutive=1;rank=8 scaffold_34 . CDS 349022 349184 . + 0 ID=Physo157093;Parent=Physo157093;rank=9 scaffold_34 . exon 349022 349184 . + . ID=Physo157093.9;Parent=Physo157093;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_34 . CDS 349257 349339 . + 0 ID=Physo157093;Parent=Physo157093;rank=10 scaffold_34 . exon 349257 349339 . + . ID=Physo157093.10;Parent=Physo157093;constitutive=1;ensembl_phase=1;rank=10 scaffold_34 . CDS 349447 349513 . + 0 ID=Physo157093;Parent=Physo157093;rank=11 scaffold_34 . exon 349447 349513 . + . ID=Physo157093.11;Parent=Physo157093;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_34 . CDS 349827 350422 . + 0 ID=Physo157093;Parent=Physo157093;rank=12 scaffold_34 . exon 349827 350422 . + . ID=Physo157093.12;Parent=Physo157093;constitutive=1;ensembl_phase=1;rank=12 scaffold_34 . CDS 350510 350605 . + 0 ID=Physo157093;Parent=Physo157093;rank=13 scaffold_34 . CDS 350717 350872 . + 0 ID=Physo157093;Parent=Physo157093;rank=14 scaffold_34 . CDS 350924 351526 . + 0 ID=Physo157093;Parent=Physo157093;rank=15 scaffold_34 . CDS 351609 351661 . + 0 ID=Physo157093;Parent=Physo157093;rank=16 scaffold_34 . CDS 351764 351884 . + 0 ID=Physo157093;Parent=Physo157093;rank=17 scaffold_34 . CDS 351959 352171 . + 0 ID=Physo157093;Parent=Physo157093;rank=18 scaffold_34 . CDS 352528 353289 . + 0 ID=Physo157093;Parent=Physo157093;rank=19 scaffold_34 . CDS 353329 353973 . + 0 ID=Physo157093;Parent=Physo157093;rank=20 scaffold_34 . biological_region 352046 352047 0.999 + . logic_name=eponine scaffold_34 . biological_region 352216 352220 0.999 - . logic_name=eponine scaffold_34 . biological_region 352881 352882 0.999 - . logic_name=eponine scaffold_34 . biological_region 352919 352920 0.999 + . logic_name=eponine scaffold_34 . biological_region 353010 353010 0.999 - . logic_name=eponine scaffold_34 . biological_region 353190 353195 0.999 - . logic_name=eponine scaffold_34 . biological_region 353884 353888 0.999 - . logic_name=eponine scaffold_34 . biological_region 356818 356819 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 355274 357187 . + . ID=Physo108818;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340018;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 355274 357187 . + . ID=Physo108818;Parent=Physo108818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 355274 355700 . + 0 ID=Physo108818;Parent=Physo108818;rank=1 scaffold_34 . exon 355274 355700 . + . ID=Physo108818.1;Parent=Physo108818;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 355721 355800 . + 0 ID=Physo108818;Parent=Physo108818;rank=2 scaffold_34 . exon 355721 355800 . + . ID=Physo108818.2;Parent=Physo108818;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 355856 357106 . + 0 ID=Physo108818;Parent=Physo108818;rank=3 scaffold_34 . exon 355856 357106 . + . ID=Physo108818.3;Parent=Physo108818;constitutive=1;rank=3 scaffold_34 . CDS 357152 357187 . + 0 ID=Physo108818;Parent=Physo108818;rank=4 scaffold_34 . exon 357152 357187 . + . ID=Physo108818.4;Parent=Physo108818;constitutive=1;rank=4 scaffold_34 ensembl protein_coding_gene 357312 358590 . - . ID=Physo134871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340107;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 357312 358590 . - . ID=Physo134871;Parent=Physo134871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 357312 357367 . - 0 ID=Physo134871;Parent=Physo134871;rank=5 scaffold_34 . exon 357312 357367 . - . ID=Physo134871.5;Parent=Physo134871;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 . CDS 357476 357551 . - 0 ID=Physo134871;Parent=Physo134871;rank=4 scaffold_34 . exon 357476 357551 . - . ID=Physo134871.4;Parent=Physo134871;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_34 . CDS 357622 358231 . - 0 ID=Physo134871;Parent=Physo134871;rank=3 scaffold_34 . exon 357622 358231 . - . ID=Physo134871.3;Parent=Physo134871;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 358308 358399 . - 0 ID=Physo134871;Parent=Physo134871;rank=2 scaffold_34 . exon 358308 358399 . - . ID=Physo134871.2;Parent=Physo134871;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 358483 358590 . - 0 ID=Physo134871;Parent=Physo134871;rank=1 scaffold_34 . exon 358483 358590 . - . ID=Physo134871.1;Parent=Physo134871;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 358819 360767 . + . ID=Physo134872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340108;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 358819 360767 . + . ID=Physo134872;Parent=Physo134872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 358819 358823 . + 0 ID=Physo134872;Parent=Physo134872;rank=1 scaffold_34 . exon 358819 358823 . + . ID=Physo134872.1;Parent=Physo134872;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 358895 360767 . + 0 ID=Physo134872;Parent=Physo134872;rank=2 scaffold_34 . exon 358895 360767 . + . ID=Physo134872.2;Parent=Physo134872;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . exon 350510 350605 . + . ID=Physo157093.13;Parent=Physo157093;constitutive=1;rank=13 scaffold_34 . exon 350717 350872 . + . ID=Physo157093.14;Parent=Physo157093;constitutive=1;rank=14 scaffold_34 . exon 350924 351526 . + . ID=Physo157093.15;Parent=Physo157093;constitutive=1;rank=15 scaffold_34 . exon 351609 351661 . + . ID=Physo157093.16;Parent=Physo157093;constitutive=1;ensembl_end_phase=2;rank=16 scaffold_34 . exon 351764 351884 . + . ID=Physo157093.17;Parent=Physo157093;constitutive=1;ensembl_phase=2;rank=17 scaffold_34 . exon 351959 352171 . + . ID=Physo157093.18;Parent=Physo157093;constitutive=1;rank=18 scaffold_34 . exon 352528 353289 . + . ID=Physo157093.19;Parent=Physo157093;constitutive=1;rank=19 scaffold_34 . exon 353329 353973 . + . ID=Physo157093.20;Parent=Physo157093;constitutive=1;rank=20 scaffold_34 . repeat_region 367478 367507 . ? . description=trf scaffold_34 ensembl protein_coding_gene 366487 367451 . - . ID=Physo108819;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340019;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 366487 367451 . - . ID=Physo108819;Parent=Physo108819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 366487 367451 . - . ID=Physo108819.1;Parent=Physo108819;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 366615 367400 . - 0 ID=Physo108819;Parent=Physo108819;rank=1 scaffold_34 ensembl protein_coding_gene 369414 369896 . + . ID=Physo134874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340110;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 369414 369896 . + . ID=Physo134874;Parent=Physo134874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 369414 369896 . + 0 ID=Physo134874;Parent=Physo134874;rank=1 scaffold_34 . exon 369414 369896 . + . ID=Physo134874.1;Parent=Physo134874;constitutive=1;rank=1 scaffold_34 . biological_region 373915 373916 0.999 + . logic_name=eponine scaffold_34 . biological_region 374001 374004 0.999 - . logic_name=eponine scaffold_34 . biological_region 374131 374131 0.999 + . logic_name=eponine scaffold_34 . biological_region 374309 374309 0.999 - . logic_name=eponine scaffold_34 . biological_region 374629 374629 0.999 - . logic_name=eponine scaffold_34 . biological_region 374671 374676 0.999 - . logic_name=eponine scaffold_34 . biological_region 374726 374729 0.999 - . logic_name=eponine scaffold_34 . biological_region 374727 374729 0.999 + . logic_name=eponine scaffold_34 . biological_region 374806 374807 0.999 + . logic_name=eponine scaffold_34 . biological_region 378654 378657 0.999 - . logic_name=eponine scaffold_34 . biological_region 378711 378713 0.999 + . logic_name=eponine scaffold_34 . biological_region 378762 378764 0.999 + . logic_name=eponine scaffold_34 . biological_region 378785 378787 0.999 + . logic_name=eponine scaffold_34 . biological_region 378817 378823 0.999 - . logic_name=eponine scaffold_34 . biological_region 378876 378877 0.999 + . logic_name=eponine scaffold_34 . biological_region 378894 378896 0.999 + . logic_name=eponine scaffold_34 . biological_region 378938 378944 0.999 - . logic_name=eponine scaffold_34 . biological_region 378963 378966 0.999 - . logic_name=eponine scaffold_34 . biological_region 379719 379721 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 378740 379987 . + . ID=Physo116416;biotype=protein_coding;external_name=estExt_Genewise1.C_340048;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 378740 379987 . + . ID=Physo116416;Parent=Physo116416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 378740 378846 . + . ID=Physo116416.1;Parent=Physo116416;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . exon 379134 379213 . + . ID=Physo116416.2;Parent=Physo116416;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_34 . CDS 379153 379213 . + 0 ID=Physo116416;Parent=Physo116416;rank=1 scaffold_34 . CDS 379313 379860 . + 0 ID=Physo116416;Parent=Physo116416;rank=2 scaffold_34 . exon 379313 379987 . + . ID=Physo116416.3;Parent=Physo116416;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_34 ensembl protein_coding_gene 374479 375691 . + . ID=Physo134877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340113;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 374479 375691 . + . ID=Physo134877;Parent=Physo134877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 374479 375522 . + 0 ID=Physo134877;Parent=Physo134877;rank=1 scaffold_34 . exon 374479 375691 . + . ID=Physo134877.1;Parent=Physo134877;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 377468 378533 . - . ID=Physo134878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340114;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 377468 378533 . - . ID=Physo134878;Parent=Physo134878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 377468 377475 . - 0 ID=Physo134878;Parent=Physo134878;rank=3 scaffold_34 . exon 377468 377475 . - . ID=Physo134878.3;Parent=Physo134878;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 377569 378396 . - 0 ID=Physo134878;Parent=Physo134878;rank=2 scaffold_34 . exon 377569 378396 . - . ID=Physo134878.2;Parent=Physo134878;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 378521 378533 . - 0 ID=Physo134878;Parent=Physo134878;rank=1 scaffold_34 . exon 378521 378533 . - . ID=Physo134878.1;Parent=Physo134878;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 371656 372513 . + . ID=Physo157094;biotype=protein_coding;external_name=C_scaffold_34000058;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 371656 372513 . + . ID=Physo157094;Parent=Physo157094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 371656 372167 . + 0 ID=Physo157094;Parent=Physo157094;rank=1 scaffold_34 . exon 371656 372167 . + . ID=Physo157094.1;Parent=Physo157094;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 372258 372513 . + 0 ID=Physo157094;Parent=Physo157094;rank=2 scaffold_34 . exon 372258 372513 . + . ID=Physo157094.2;Parent=Physo157094;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 372731 374304 . - . ID=Physo157095;biotype=protein_coding;external_name=C_scaffold_34000059;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 372731 374304 . - . ID=Physo157095;Parent=Physo157095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 372731 372739 . - 0 ID=Physo157095;Parent=Physo157095;rank=4 scaffold_34 . exon 372731 372739 . - . ID=Physo157095.4;Parent=Physo157095;constitutive=1;rank=4 scaffold_34 . CDS 372793 373016 . - 0 ID=Physo157095;Parent=Physo157095;rank=3 scaffold_34 . exon 372793 373016 . - . ID=Physo157095.3;Parent=Physo157095;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 373281 373885 . - 0 ID=Physo157095;Parent=Physo157095;rank=2 scaffold_34 . exon 373281 373885 . - . ID=Physo157095.2;Parent=Physo157095;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 373910 374304 . - 0 ID=Physo157095;Parent=Physo157095;rank=1 scaffold_34 . exon 373910 374304 . - . ID=Physo157095.1;Parent=Physo157095;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 375760 376115 . - . ID=Physo157097;biotype=protein_coding;external_name=C_scaffold_34000061;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 375760 376115 . - . ID=Physo157097;Parent=Physo157097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 375760 376060 . - 0 ID=Physo157097;Parent=Physo157097;rank=2 scaffold_34 . exon 375760 376060 . - . ID=Physo157097.2;Parent=Physo157097;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 376096 376115 . - 0 ID=Physo157097;Parent=Physo157097;rank=1 scaffold_34 . exon 376096 376115 . - . ID=Physo157097.1;Parent=Physo157097;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . repeat_region 384722 384779 . ? . description=trf scaffold_34 . repeat_region 384723 384767 . ? . description=trf scaffold_34 . repeat_region 384723 384767 . ? . description=trf scaffold_34 . repeat_region 384723 384791 . ? . description=trf scaffold_34 . repeat_region 387084 387123 . ? . description=trf scaffold_34 . repeat_region 388566 388608 . ? . description=dust scaffold_34 . repeat_region 388573 388615 . ? . description=trf scaffold_34 ensembl protein_coding_gene 382197 383656 . + . ID=Physo134880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340116;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 382197 383656 . + . ID=Physo134880;Parent=Physo134880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 382197 382326 . + 0 ID=Physo134880;Parent=Physo134880;rank=1 scaffold_34 . exon 382197 382326 . + . ID=Physo134880.1;Parent=Physo134880;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 382400 383466 . + 0 ID=Physo134880;Parent=Physo134880;rank=2 scaffold_34 . exon 382400 383466 . + . ID=Physo134880.2;Parent=Physo134880;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 383549 383656 . + 0 ID=Physo134880;Parent=Physo134880;rank=3 scaffold_34 . exon 383549 383656 . + . ID=Physo134880.3;Parent=Physo134880;constitutive=1;rank=3 scaffold_34 ensembl protein_coding_gene 384482 386924 . - . ID=Physo134881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340117;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 384482 386924 . - . ID=Physo134881;Parent=Physo134881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 384482 386029 . - . ID=Physo134881.2;Parent=Physo134881;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_34 . CDS 384551 386029 . - 0 ID=Physo134881;Parent=Physo134881;rank=2 scaffold_34 . CDS 386112 386915 . - 0 ID=Physo134881;Parent=Physo134881;rank=1 scaffold_34 . exon 386112 386924 . - . ID=Physo134881.1;Parent=Physo134881;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 388504 391969 . + . ID=Physo157099;biotype=protein_coding;external_name=C_scaffold_34000063;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 388504 391969 . + . ID=Physo157099;Parent=Physo157099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 388504 388842 . + 0 ID=Physo157099;Parent=Physo157099;rank=1 scaffold_34 . exon 388504 388842 . + . ID=Physo157099.1;Parent=Physo157099;constitutive=1;rank=1 scaffold_34 . CDS 388943 391750 . + 0 ID=Physo157099;Parent=Physo157099;rank=2 scaffold_34 . exon 388943 391750 . + . ID=Physo157099.2;Parent=Physo157099;constitutive=1;rank=2 scaffold_34 . CDS 391802 391969 . + 0 ID=Physo157099;Parent=Physo157099;rank=3 scaffold_34 . biological_region 391676 391679 0.999 + . logic_name=eponine scaffold_34 . biological_region 393095 393097 0.999 + . logic_name=eponine scaffold_34 . biological_region 393156 393160 0.999 + . logic_name=eponine scaffold_34 . biological_region 393163 393167 0.999 - . logic_name=eponine scaffold_34 . biological_region 393185 393187 0.999 - . logic_name=eponine scaffold_34 . biological_region 393231 393232 0.999 - . logic_name=eponine scaffold_34 . biological_region 394605 394608 0.999 + . logic_name=eponine scaffold_34 . biological_region 394704 394710 0.999 - . logic_name=eponine scaffold_34 . biological_region 395674 395679 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 395848 398093 . + . ID=Physo108821;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340021;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 395848 398093 . + . ID=Physo108821;Parent=Physo108821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 395848 395920 . + 0 ID=Physo108821;Parent=Physo108821;rank=1 scaffold_34 . exon 395848 395920 . + . ID=Physo108821.1;Parent=Physo108821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 395969 396070 . + 0 ID=Physo108821;Parent=Physo108821;rank=2 scaffold_34 . exon 395969 396070 . + . ID=Physo108821.2;Parent=Physo108821;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 396163 396216 . + 0 ID=Physo108821;Parent=Physo108821;rank=3 scaffold_34 . exon 396163 396216 . + . ID=Physo108821.3;Parent=Physo108821;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 396291 397222 . + 0 ID=Physo108821;Parent=Physo108821;rank=4 scaffold_34 . exon 396291 397222 . + . ID=Physo108821.4;Parent=Physo108821;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 397290 397355 . + 0 ID=Physo108821;Parent=Physo108821;rank=5 scaffold_34 . exon 397290 397355 . + . ID=Physo108821.5;Parent=Physo108821;constitutive=1;rank=5 scaffold_34 . CDS 397428 397838 . + 0 ID=Physo108821;Parent=Physo108821;rank=6 scaffold_34 . exon 397428 397838 . + . ID=Physo108821.6;Parent=Physo108821;constitutive=1;rank=6 scaffold_34 . CDS 397920 398093 . + 0 ID=Physo108821;Parent=Physo108821;rank=7 scaffold_34 . exon 397920 398093 . + . ID=Physo108821.7;Parent=Physo108821;constitutive=1;rank=7 scaffold_34 ensembl protein_coding_gene 392918 395196 . + . ID=Physo134883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340119;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 392918 395196 . + . ID=Physo134883;Parent=Physo134883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 392918 395158 . + 0 ID=Physo134883;Parent=Physo134883;rank=1 scaffold_34 . exon 392918 395196 . + . ID=Physo134883.1;Parent=Physo134883;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 399726 400929 . - . ID=Physo134885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340121;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 399726 400929 . - . ID=Physo134885;Parent=Physo134885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 399726 400001 . - 0 ID=Physo134885;Parent=Physo134885;rank=6 scaffold_34 . exon 399726 400001 . - . ID=Physo134885.6;Parent=Physo134885;constitutive=1;rank=6 scaffold_34 . CDS 400080 400144 . - 0 ID=Physo134885;Parent=Physo134885;rank=5 scaffold_34 . CDS 400226 400308 . - 0 ID=Physo134885;Parent=Physo134885;rank=4 scaffold_34 . CDS 400379 400447 . - 0 ID=Physo134885;Parent=Physo134885;rank=3 scaffold_34 . CDS 400533 400654 . - 0 ID=Physo134885;Parent=Physo134885;rank=2 scaffold_34 . CDS 400774 400929 . - 0 ID=Physo134885;Parent=Physo134885;rank=1 scaffold_34 . exon 391802 391969 . + . ID=Physo157099.3;Parent=Physo157099;constitutive=1;rank=3 scaffold_34 . repeat_region 400906 400927 . ? . description=trf scaffold_34 . repeat_region 408548 408573 . ? . description=trf scaffold_34 ensembl protein_coding_gene 401188 402578 . - . ID=Physo108822;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340022;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 401188 402578 . - . ID=Physo108822;Parent=Physo108822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 401188 401859 . - 0 ID=Physo108822;Parent=Physo108822;rank=2 scaffold_34 . exon 401188 401859 . - . ID=Physo108822.2;Parent=Physo108822;constitutive=1;rank=2 scaffold_34 . CDS 401937 402578 . - 0 ID=Physo108822;Parent=Physo108822;rank=1 scaffold_34 . exon 401937 402578 . - . ID=Physo108822.1;Parent=Physo108822;constitutive=1;rank=1 scaffold_34 . exon 400080 400144 . - . ID=Physo134885.5;Parent=Physo134885;constitutive=1;ensembl_phase=1;rank=5 scaffold_34 . exon 400226 400308 . - . ID=Physo134885.4;Parent=Physo134885;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_34 . exon 400379 400447 . - . ID=Physo134885.3;Parent=Physo134885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_34 . exon 400533 400654 . - . ID=Physo134885.2;Parent=Physo134885;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . exon 400774 400929 . - . ID=Physo134885.1;Parent=Physo134885;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 406020 406893 . + . ID=Physo134887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340123;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 406020 406893 . + . ID=Physo134887;Parent=Physo134887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 406020 406565 . + 0 ID=Physo134887;Parent=Physo134887;rank=1 scaffold_34 . exon 406020 406565 . + . ID=Physo134887.1;Parent=Physo134887;constitutive=1;rank=1 scaffold_34 . CDS 406738 406893 . + 0 ID=Physo134887;Parent=Physo134887;rank=2 scaffold_34 . exon 406738 406893 . + . ID=Physo134887.2;Parent=Physo134887;constitutive=1;rank=2 scaffold_34 ensembl protein_coding_gene 407061 408161 . - . ID=Physo134888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340124;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 407061 408161 . - . ID=Physo134888;Parent=Physo134888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 407061 407117 . - 0 ID=Physo134888;Parent=Physo134888;rank=3 scaffold_34 . exon 407061 407117 . - . ID=Physo134888.3;Parent=Physo134888;constitutive=1;rank=3 scaffold_34 . CDS 407240 407929 . - 0 ID=Physo134888;Parent=Physo134888;rank=2 scaffold_34 . exon 407240 407929 . - . ID=Physo134888.2;Parent=Physo134888;constitutive=1;rank=2 scaffold_34 . CDS 408090 408161 . - 0 ID=Physo134888;Parent=Physo134888;rank=1 scaffold_34 . exon 408090 408161 . - . ID=Physo134888.1;Parent=Physo134888;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 408496 410503 . + . ID=Physo134889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340125;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 408496 410503 . + . ID=Physo134889;Parent=Physo134889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 408496 409124 . + 0 ID=Physo134889;Parent=Physo134889;rank=1 scaffold_34 . exon 408496 409124 . + . ID=Physo134889.1;Parent=Physo134889;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 409224 409325 . + 0 ID=Physo134889;Parent=Physo134889;rank=2 scaffold_34 . exon 409224 409325 . + . ID=Physo134889.2;Parent=Physo134889;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_34 . CDS 409427 410294 . + 0 ID=Physo134889;Parent=Physo134889;rank=3 scaffold_34 . exon 409427 410503 . + . ID=Physo134889.3;Parent=Physo134889;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_34 . biological_region 409879 409880 0.999 + . logic_name=eponine scaffold_34 . biological_region 409931 409933 0.999 - . logic_name=eponine scaffold_34 . biological_region 410010 410012 0.999 - . logic_name=eponine scaffold_34 . repeat_region 410985 410993 . ? . description=dust scaffold_34 . repeat_region 411840 411848 . ? . description=dust scaffold_34 . biological_region 411867 411876 0.999 + . logic_name=eponine scaffold_34 . biological_region 411924 411926 0.999 - . logic_name=eponine scaffold_34 . repeat_region 416233 416336 . ? . description=dust scaffold_34 . repeat_region 418134 418183 . ? . description=dust scaffold_34 . repeat_region 419577 419662 . ? . description=dust scaffold_34 ensembl protein_coding_gene 412519 414015 . + . ID=Physo134890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340126;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 412519 414015 . + . ID=Physo134890;Parent=Physo134890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 412519 413464 . + 0 ID=Physo134890;Parent=Physo134890;rank=1 scaffold_34 . exon 412519 413464 . + . ID=Physo134890.1;Parent=Physo134890;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 413506 413924 . + 0 ID=Physo134890;Parent=Physo134890;rank=2 scaffold_34 . exon 413506 413924 . + . ID=Physo134890.2;Parent=Physo134890;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 413998 414015 . + 0 ID=Physo134890;Parent=Physo134890;rank=3 scaffold_34 . exon 413998 414015 . + . ID=Physo134890.3;Parent=Physo134890;constitutive=1;rank=3 scaffold_34 ensembl protein_coding_gene 421471 423734 . - . ID=Physo134891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340127;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 421471 423734 . - . ID=Physo134891;Parent=Physo134891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 421471 421695 . - . ID=Physo134891.2;Parent=Physo134891;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_34 . CDS 421582 421695 . - 0 ID=Physo134891;Parent=Physo134891;rank=2 scaffold_34 . CDS 421776 423734 . - 0 ID=Physo134891;Parent=Physo134891;rank=1 scaffold_34 . exon 421776 423734 . - . ID=Physo134891.1;Parent=Physo134891;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 424725 426671 . + . ID=Physo134892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340128;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 424725 426671 . + . ID=Physo134892;Parent=Physo134892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 424725 426671 . + 0 ID=Physo134892;Parent=Physo134892;rank=1 scaffold_34 . exon 424725 426671 . + . ID=Physo134892.1;Parent=Physo134892;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 426958 427846 . + . ID=Physo134893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340129;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 426958 427846 . + . ID=Physo134893;Parent=Physo134893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 426958 427425 . + 0 ID=Physo134893;Parent=Physo134893;rank=1 scaffold_34 . exon 426958 427425 . + . ID=Physo134893.1;Parent=Physo134893;constitutive=1;rank=1 scaffold_34 . CDS 427838 427846 . + 0 ID=Physo134893;Parent=Physo134893;rank=2 scaffold_34 . exon 427838 427846 . + . ID=Physo134893.2;Parent=Physo134893;constitutive=1;rank=2 scaffold_34 . biological_region 432686 432688 0.999 + . logic_name=eponine scaffold_34 . repeat_region 433500 433523 . ? . description=dust scaffold_34 . repeat_region 433500 433523 . ? . description=trf scaffold_34 . repeat_region 436633 436640 . ? . description=dust scaffold_34 . repeat_region 438647 438799 . ? . description=trf scaffold_34 ensembl protein_coding_gene 437623 437998 . + . ID=Physo108823;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340023;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 437623 437998 . + . ID=Physo108823;Parent=Physo108823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 437623 437897 . + 0 ID=Physo108823;Parent=Physo108823;rank=1 scaffold_34 . exon 437623 437897 . + . ID=Physo108823.1;Parent=Physo108823;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 437935 437998 . + 0 ID=Physo108823;Parent=Physo108823;rank=2 scaffold_34 . exon 437935 437998 . + . ID=Physo108823.2;Parent=Physo108823;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 431891 432775 . + . ID=Physo134894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340130;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 431891 432775 . + . ID=Physo134894;Parent=Physo134894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 431891 431992 . + 0 ID=Physo134894;Parent=Physo134894;rank=1 scaffold_34 . exon 431891 431992 . + . ID=Physo134894.1;Parent=Physo134894;constitutive=1;rank=1 scaffold_34 . CDS 432071 432230 . + 0 ID=Physo134894;Parent=Physo134894;rank=2 scaffold_34 . exon 432071 432230 . + . ID=Physo134894.2;Parent=Physo134894;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . CDS 432292 432377 . + 0 ID=Physo134894;Parent=Physo134894;rank=3 scaffold_34 . exon 432292 432377 . + . ID=Physo134894.3;Parent=Physo134894;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 432470 432775 . + 0 ID=Physo134894;Parent=Physo134894;rank=4 scaffold_34 . exon 432470 432775 . + . ID=Physo134894.4;Parent=Physo134894;constitutive=1;rank=4 scaffold_34 ensembl protein_coding_gene 432916 434385 . + . ID=Physo134895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340131;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 432916 434385 . + . ID=Physo134895;Parent=Physo134895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 432916 432923 . + 0 ID=Physo134895;Parent=Physo134895;rank=1 scaffold_34 . exon 432916 432923 . + . ID=Physo134895.1;Parent=Physo134895;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 432969 433125 . + 0 ID=Physo134895;Parent=Physo134895;rank=2 scaffold_34 . exon 432969 433125 . + . ID=Physo134895.2;Parent=Physo134895;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 433218 433257 . + 0 ID=Physo134895;Parent=Physo134895;rank=3 scaffold_34 . exon 433218 433257 . + . ID=Physo134895.3;Parent=Physo134895;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_34 . CDS 433535 433722 . + 0 ID=Physo134895;Parent=Physo134895;rank=4 scaffold_34 . exon 433535 433722 . + . ID=Physo134895.4;Parent=Physo134895;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 433770 433922 . + 0 ID=Physo134895;Parent=Physo134895;rank=5 scaffold_34 . exon 433770 433922 . + . ID=Physo134895.5;Parent=Physo134895;constitutive=1;rank=5 scaffold_34 . CDS 434005 434385 . + 0 ID=Physo134895;Parent=Physo134895;rank=6 scaffold_34 . exon 434005 434385 . + . ID=Physo134895.6;Parent=Physo134895;constitutive=1;rank=6 scaffold_34 ensembl protein_coding_gene 435558 436508 . + . ID=Physo134896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340132;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 435558 436508 . + . ID=Physo134896;Parent=Physo134896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 435558 436508 . + 0 ID=Physo134896;Parent=Physo134896;rank=1 scaffold_34 . exon 435558 436508 . + . ID=Physo134896.1;Parent=Physo134896;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 439491 440192 . + . ID=Physo134898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340134;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 439491 440192 . + . ID=Physo134898;Parent=Physo134898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 439491 440192 . + 0 ID=Physo134898;Parent=Physo134898;rank=1 scaffold_34 . exon 439491 440192 . + . ID=Physo134898.1;Parent=Physo134898;constitutive=1;rank=1 scaffold_34 . repeat_region 446691 448997 . - . description=GypsyPi-1c_I-int scaffold_34 ensembl protein_coding_gene 444580 446094 . + . ID=Physo134899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340135;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 444580 446094 . + . ID=Physo134899;Parent=Physo134899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 444580 445080 . + 0 ID=Physo134899;Parent=Physo134899;rank=1 scaffold_34 . exon 444580 445080 . + . ID=Physo134899.1;Parent=Physo134899;constitutive=1;rank=1 scaffold_34 . CDS 445571 445605 . + 0 ID=Physo134899;Parent=Physo134899;rank=2 scaffold_34 . exon 445571 445605 . + . ID=Physo134899.2;Parent=Physo134899;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 445779 446094 . + 0 ID=Physo134899;Parent=Physo134899;rank=3 scaffold_34 . exon 445779 446094 . + . ID=Physo134899.3;Parent=Physo134899;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 ensembl protein_coding_gene 446347 450285 . - . ID=Physo134900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340136;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 446347 450285 . - . ID=Physo134900;Parent=Physo134900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 446347 446353 . - 0 ID=Physo134900;Parent=Physo134900;rank=5 scaffold_34 . exon 446347 446353 . - . ID=Physo134900.5;Parent=Physo134900;constitutive=1;ensembl_phase=2;rank=5 scaffold_34 . CDS 446394 447919 . - 0 ID=Physo134900;Parent=Physo134900;rank=4 scaffold_34 . exon 446394 447919 . - . ID=Physo134900.4;Parent=Physo134900;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_34 . CDS 447982 448691 . - 0 ID=Physo134900;Parent=Physo134900;rank=3 scaffold_34 . exon 447982 448691 . - . ID=Physo134900.3;Parent=Physo134900;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 448792 449226 . - 0 ID=Physo134900;Parent=Physo134900;rank=2 scaffold_34 . exon 448792 449226 . - . ID=Physo134900.2;Parent=Physo134900;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 449412 450285 . - 0 ID=Physo134900;Parent=Physo134900;rank=1 scaffold_34 . exon 449412 450285 . - . ID=Physo134900.1;Parent=Physo134900;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . biological_region 450023 450026 0.999 - . logic_name=eponine scaffold_34 . biological_region 452413 452413 0.999 - . logic_name=eponine scaffold_34 . biological_region 454491 454494 0.999 + . logic_name=eponine scaffold_34 . repeat_region 454604 454655 . ? . description=trf scaffold_34 . biological_region 454900 454902 0.999 - . logic_name=eponine scaffold_34 . biological_region 456450 456450 0.999 - . logic_name=eponine scaffold_34 . biological_region 456687 456691 0.999 - . logic_name=eponine scaffold_34 . biological_region 457571 457576 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 451911 452750 . + . ID=Physo134901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340137;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 451911 452750 . + . ID=Physo134901;Parent=Physo134901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 451911 451917 . + 0 ID=Physo134901;Parent=Physo134901;rank=1 scaffold_34 . exon 451911 451917 . + . ID=Physo134901.1;Parent=Physo134901;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 451983 452026 . + 0 ID=Physo134901;Parent=Physo134901;rank=2 scaffold_34 . exon 451983 452026 . + . ID=Physo134901.2;Parent=Physo134901;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 452156 452269 . + 0 ID=Physo134901;Parent=Physo134901;rank=3 scaffold_34 . exon 452156 452269 . + . ID=Physo134901.3;Parent=Physo134901;constitutive=1;rank=3 scaffold_34 . CDS 452316 452750 . + 0 ID=Physo134901;Parent=Physo134901;rank=4 scaffold_34 . exon 452316 452750 . + . ID=Physo134901.4;Parent=Physo134901;constitutive=1;rank=4 scaffold_34 . repeat_region 460366 460377 . ? . description=dust scaffold_34 . repeat_region 467615 467622 . ? . description=dust scaffold_34 ensembl protein_coding_gene 466245 467241 . - . ID=Physo134902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340138;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 466245 467241 . - . ID=Physo134902;Parent=Physo134902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 466245 467060 . - 0 ID=Physo134902;Parent=Physo134902;rank=2 scaffold_34 . exon 466245 467060 . - . ID=Physo134902.2;Parent=Physo134902;constitutive=1;rank=2 scaffold_34 . CDS 467176 467241 . - 0 ID=Physo134902;Parent=Physo134902;rank=1 scaffold_34 . exon 467176 467241 . - . ID=Physo134902.1;Parent=Physo134902;constitutive=1;rank=1 scaffold_34 . repeat_region 472363 472410 . ? . description=trf scaffold_34 . biological_region 472438 472444 0.999 + . logic_name=eponine scaffold_34 . biological_region 472449 472451 0.999 - . logic_name=eponine scaffold_34 . biological_region 472469 472471 0.999 + . logic_name=eponine scaffold_34 . biological_region 472474 472480 0.999 - . logic_name=eponine scaffold_34 . repeat_region 472532 472575 . ? . description=trf scaffold_34 . repeat_region 475089 475117 . ? . description=trf scaffold_34 . repeat_region 485834 485883 . ? . description=dust scaffold_34 . repeat_region 487326 487375 . ? . description=dust scaffold_34 . repeat_region 488227 488238 . ? . description=dust scaffold_34 . repeat_region 489011 489025 . ? . description=dust scaffold_34 . repeat_region 489300 489349 . ? . description=dust scaffold_34 ensembl protein_coding_gene 483974 488242 . - . ID=Physo108824;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340024;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 483974 488242 . - . ID=Physo108824;Parent=Physo108824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 483974 485824 . - . ID=Physo108824.5;Parent=Physo108824;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_34 . CDS 484211 485824 . - 0 ID=Physo108824;Parent=Physo108824;rank=5 scaffold_34 . CDS 485946 485993 . - 0 ID=Physo108824;Parent=Physo108824;rank=4 scaffold_34 . exon 485946 485993 . - . ID=Physo108824.4;Parent=Physo108824;constitutive=1;rank=4 scaffold_34 . CDS 487124 487252 . - 0 ID=Physo108824;Parent=Physo108824;rank=3 scaffold_34 . exon 487124 487252 . - . ID=Physo108824.3;Parent=Physo108824;constitutive=1;rank=3 scaffold_34 . CDS 487283 487310 . - 0 ID=Physo108824;Parent=Physo108824;rank=2 scaffold_34 . exon 487283 487310 . - . ID=Physo108824.2;Parent=Physo108824;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 487398 488218 . - 0 ID=Physo108824;Parent=Physo108824;rank=1 scaffold_34 . exon 487398 488242 . - . ID=Physo108824.1;Parent=Physo108824;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 489350 490733 . + . ID=Physo108825;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340025;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 489350 490733 . + . ID=Physo108825;Parent=Physo108825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 489350 490733 . + . ID=Physo108825.1;Parent=Physo108825;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 489375 490496 . + 0 ID=Physo108825;Parent=Physo108825;rank=1 scaffold_34 . biological_region 490347 490350 0.999 + . logic_name=eponine scaffold_34 . biological_region 490397 490400 0.999 - . logic_name=eponine scaffold_34 . biological_region 492149 492152 0.999 - . logic_name=eponine scaffold_34 . biological_region 493564 493569 0.999 + . logic_name=eponine scaffold_34 . biological_region 493602 493605 0.999 - . logic_name=eponine scaffold_34 . biological_region 493608 493618 0.999 + . logic_name=eponine scaffold_34 . biological_region 493796 493797 0.999 - . logic_name=eponine scaffold_34 . biological_region 496023 496025 0.999 + . logic_name=eponine scaffold_34 . biological_region 497235 497237 0.999 - . logic_name=eponine scaffold_34 . biological_region 497415 497416 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 499138 500519 . - . ID=Physo108826;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340026;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 499138 500519 . - . ID=Physo108826;Parent=Physo108826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 499138 500187 . - 0 ID=Physo108826;Parent=Physo108826;rank=1 scaffold_34 . exon 499138 500231 . - . ID=Physo108826.2;Parent=Physo108826;constitutive=1;ensembl_phase=-1;rank=2 scaffold_34 . repeat_region 501097 501111 . ? . description=dust scaffold_34 . repeat_region 504570 504577 . ? . description=dust scaffold_34 . exon 500512 500519 . - . ID=Physo108826.1;Parent=Physo108826;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 501461 502653 . + . ID=Physo134906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340142;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 501461 502653 . + . ID=Physo134906;Parent=Physo134906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 501461 501898 . + 0 ID=Physo134906;Parent=Physo134906;rank=1 scaffold_34 . exon 501461 501898 . + . ID=Physo134906.1;Parent=Physo134906;constitutive=1;rank=1 scaffold_34 . CDS 501963 502085 . + 0 ID=Physo134906;Parent=Physo134906;rank=2 scaffold_34 . exon 501963 502085 . + . ID=Physo134906.2;Parent=Physo134906;constitutive=1;rank=2 scaffold_34 . CDS 502162 502653 . + 0 ID=Physo134906;Parent=Physo134906;rank=3 scaffold_34 . exon 502162 502653 . + . ID=Physo134906.3;Parent=Physo134906;constitutive=1;rank=3 scaffold_34 ensembl protein_coding_gene 506458 508469 . + . ID=Physo134907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340143;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 506458 508469 . + . ID=Physo134907;Parent=Physo134907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 506458 507161 . + 0 ID=Physo134907;Parent=Physo134907;rank=1 scaffold_34 . exon 506458 507161 . + . ID=Physo134907.1;Parent=Physo134907;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 507224 507603 . + 0 ID=Physo134907;Parent=Physo134907;rank=2 scaffold_34 . exon 507224 507603 . + . ID=Physo134907.2;Parent=Physo134907;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_34 . CDS 507667 508469 . + 0 ID=Physo134907;Parent=Physo134907;rank=3 scaffold_34 . exon 507667 508469 . + . ID=Physo134907.3;Parent=Physo134907;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 ensembl protein_coding_gene 508558 510214 . - . ID=Physo134908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340144;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 508558 510214 . - . ID=Physo134908;Parent=Physo134908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 508558 508688 . - 0 ID=Physo134908;Parent=Physo134908;rank=6 scaffold_34 . exon 508558 508688 . - . ID=Physo134908.6;Parent=Physo134908;constitutive=1;ensembl_phase=1;rank=6 scaffold_34 . CDS 508770 508949 . - 0 ID=Physo134908;Parent=Physo134908;rank=5 scaffold_34 . exon 508770 508949 . - . ID=Physo134908.5;Parent=Physo134908;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_34 . CDS 509030 509179 . - 0 ID=Physo134908;Parent=Physo134908;rank=4 scaffold_34 . exon 509030 509179 . - . ID=Physo134908.4;Parent=Physo134908;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 509263 509940 . - 0 ID=Physo134908;Parent=Physo134908;rank=3 scaffold_34 . exon 509263 509940 . - . ID=Physo134908.3;Parent=Physo134908;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 510050 510082 . - 0 ID=Physo134908;Parent=Physo134908;rank=2 scaffold_34 . CDS 510160 510214 . - 0 ID=Physo134908;Parent=Physo134908;rank=1 scaffold_34 . biological_region 510233 510233 0.999 - . logic_name=eponine scaffold_34 . repeat_region 510843 510880 . ? . description=trf scaffold_34 . biological_region 510926 510933 0.999 - . logic_name=eponine scaffold_34 . biological_region 514815 514817 0.999 - . logic_name=eponine scaffold_34 . biological_region 519195 519198 0.999 - . logic_name=eponine scaffold_34 . biological_region 519217 519218 0.999 - . logic_name=eponine scaffold_34 . biological_region 519721 519722 0.999 - . logic_name=eponine scaffold_34 . exon 510050 510082 . - . ID=Physo134908.2;Parent=Physo134908;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_34 . exon 510160 510214 . - . ID=Physo134908.1;Parent=Physo134908;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 511529 512427 . + . ID=Physo134910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340146;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 511529 512427 . + . ID=Physo134910;Parent=Physo134910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 511529 511935 . + 0 ID=Physo134910;Parent=Physo134910;rank=1 scaffold_34 . exon 511529 511935 . + . ID=Physo134910.1;Parent=Physo134910;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 512031 512427 . + 0 ID=Physo134910;Parent=Physo134910;rank=2 scaffold_34 . exon 512031 512427 . + . ID=Physo134910.2;Parent=Physo134910;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 512677 515001 . + . ID=Physo134911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340147;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 512677 515001 . + . ID=Physo134911;Parent=Physo134911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 512677 513597 . + 0 ID=Physo134911;Parent=Physo134911;rank=1 scaffold_34 . exon 512677 513597 . + . ID=Physo134911.1;Parent=Physo134911;constitutive=1;rank=1 scaffold_34 . CDS 513664 513723 . + 0 ID=Physo134911;Parent=Physo134911;rank=2 scaffold_34 . exon 513664 513723 . + . ID=Physo134911.2;Parent=Physo134911;constitutive=1;rank=2 scaffold_34 . CDS 513760 515001 . + 0 ID=Physo134911;Parent=Physo134911;rank=3 scaffold_34 . exon 513760 515001 . + . ID=Physo134911.3;Parent=Physo134911;constitutive=1;rank=3 scaffold_34 ensembl pseudogene 516070 519368 . - . ID=Physo134912;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_340148;logic_name=jgi_physo1_1 scaffold_34 ensembl pseudogene 516070 519368 . - . ID=Physo134912;Parent=Physo134912;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_34 . exon 516070 519368 . - . ID=Physo134912.1;Parent=Physo134912;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 510558 511350 . - . ID=Physo157105;biotype=protein_coding;external_name=C_scaffold_34000069;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 510558 511350 . - . ID=Physo157105;Parent=Physo157105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 510558 511040 . - 0 ID=Physo157105;Parent=Physo157105;rank=2 scaffold_34 . exon 510558 511040 . - . ID=Physo157105.2;Parent=Physo157105;constitutive=1;rank=2 scaffold_34 . CDS 511135 511350 . - 0 ID=Physo157105;Parent=Physo157105;rank=1 scaffold_34 . exon 511135 511350 . - . ID=Physo157105.1;Parent=Physo157105;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 522088 532498 . - . ID=Physo157108;biotype=protein_coding;external_name=C_scaffold_34000072;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 522088 532498 . - . ID=Physo157108;Parent=Physo157108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 522088 522715 . - 0 ID=Physo157108;Parent=Physo157108;rank=19 scaffold_34 . exon 522088 522715 . - . ID=Physo157108.19;Parent=Physo157108;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=19 scaffold_34 . CDS 522809 522956 . - 0 ID=Physo157108;Parent=Physo157108;rank=18 scaffold_34 . exon 522809 522956 . - . ID=Physo157108.18;Parent=Physo157108;constitutive=1;ensembl_end_phase=1;rank=18 scaffold_34 . CDS 523042 523167 . - 0 ID=Physo157108;Parent=Physo157108;rank=17 scaffold_34 . exon 523042 523167 . - . ID=Physo157108.17;Parent=Physo157108;constitutive=1;rank=17 scaffold_34 . CDS 523279 523365 . - 0 ID=Physo157108;Parent=Physo157108;rank=16 scaffold_34 . exon 523279 523365 . - . ID=Physo157108.16;Parent=Physo157108;constitutive=1;rank=16 scaffold_34 . CDS 523491 523608 . - 0 ID=Physo157108;Parent=Physo157108;rank=15 scaffold_34 . exon 523491 523608 . - . ID=Physo157108.15;Parent=Physo157108;constitutive=1;ensembl_phase=2;rank=15 scaffold_34 . CDS 524112 524245 . - 0 ID=Physo157108;Parent=Physo157108;rank=14 scaffold_34 . exon 524112 524245 . - . ID=Physo157108.14;Parent=Physo157108;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_34 . CDS 524282 527257 . - 0 ID=Physo157108;Parent=Physo157108;rank=13 scaffold_34 . exon 524282 527257 . - . ID=Physo157108.13;Parent=Physo157108;constitutive=1;rank=13 scaffold_34 . CDS 527328 527444 . - 0 ID=Physo157108;Parent=Physo157108;rank=12 scaffold_34 . exon 527328 527444 . - . ID=Physo157108.12;Parent=Physo157108;constitutive=1;rank=12 scaffold_34 . CDS 527500 527620 . - 0 ID=Physo157108;Parent=Physo157108;rank=11 scaffold_34 . exon 527500 527620 . - . ID=Physo157108.11;Parent=Physo157108;constitutive=1;ensembl_phase=2;rank=11 scaffold_34 . CDS 527691 527834 . - 0 ID=Physo157108;Parent=Physo157108;rank=10 scaffold_34 . exon 527691 527834 . - . ID=Physo157108.10;Parent=Physo157108;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_34 . CDS 528000 528136 . - 0 ID=Physo157108;Parent=Physo157108;rank=9 scaffold_34 . exon 528000 528136 . - . ID=Physo157108.9;Parent=Physo157108;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_34 . CDS 528158 529134 . - 0 ID=Physo157108;Parent=Physo157108;rank=8 scaffold_34 . exon 528158 529134 . - . ID=Physo157108.8;Parent=Physo157108;constitutive=1;ensembl_phase=1;rank=8 scaffold_34 . CDS 529240 529531 . - 0 ID=Physo157108;Parent=Physo157108;rank=7 scaffold_34 . exon 529240 529531 . - . ID=Physo157108.7;Parent=Physo157108;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_34 . CDS 529664 529757 . - 0 ID=Physo157108;Parent=Physo157108;rank=6 scaffold_34 . exon 529664 529757 . - . ID=Physo157108.6;Parent=Physo157108;constitutive=1;ensembl_phase=2;rank=6 scaffold_34 . CDS 529932 530974 . - 0 ID=Physo157108;Parent=Physo157108;rank=5 scaffold_34 . CDS 531249 531521 . - 0 ID=Physo157108;Parent=Physo157108;rank=4 scaffold_34 . CDS 531598 531613 . - 0 ID=Physo157108;Parent=Physo157108;rank=3 scaffold_34 . CDS 531735 531817 . - 0 ID=Physo157108;Parent=Physo157108;rank=2 scaffold_34 . CDS 531899 532498 . - 0 ID=Physo157108;Parent=Physo157108;rank=1 scaffold_34 . repeat_region 531090 531097 . ? . description=dust scaffold_34 . biological_region 534754 534760 0.999 - . logic_name=eponine scaffold_34 . biological_region 536579 536582 0.999 + . logic_name=eponine scaffold_34 . biological_region 536615 536621 0.999 + . logic_name=eponine scaffold_34 . biological_region 536672 536678 0.999 - . logic_name=eponine scaffold_34 . biological_region 536717 536721 0.999 - . logic_name=eponine scaffold_34 . repeat_region 537190 537236 . ? . description=dust scaffold_34 . repeat_region 537202 537236 . ? . description=trf scaffold_34 ensembl protein_coding_gene 532904 534027 . + . ID=Physo134916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340152;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 532904 534027 . + . ID=Physo134916;Parent=Physo134916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 532904 533461 . + . ID=Physo134916.1;Parent=Physo134916;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 532910 533461 . + 0 ID=Physo134916;Parent=Physo134916;rank=1 scaffold_34 . CDS 533539 534027 . + 0 ID=Physo134916;Parent=Physo134916;rank=2 scaffold_34 . exon 533539 534027 . + . ID=Physo134916.2;Parent=Physo134916;constitutive=1;rank=2 scaffold_34 ensembl protein_coding_gene 534424 535170 . + . ID=Physo134917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340153;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 534424 535170 . + . ID=Physo134917;Parent=Physo134917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 534424 534511 . + 0 ID=Physo134917;Parent=Physo134917;rank=1 scaffold_34 . exon 534424 534511 . + . ID=Physo134917.1;Parent=Physo134917;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 534587 535170 . + 0 ID=Physo134917;Parent=Physo134917;rank=2 scaffold_34 . exon 534587 535170 . + . ID=Physo134917.2;Parent=Physo134917;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 ensembl protein_coding_gene 535345 536175 . - . ID=Physo134918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340154;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 535345 536175 . - . ID=Physo134918;Parent=Physo134918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 535345 536175 . - 0 ID=Physo134918;Parent=Physo134918;rank=1 scaffold_34 . exon 535345 536175 . - . ID=Physo134918.1;Parent=Physo134918;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 536751 538329 . + . ID=Physo134919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340155;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 536751 538329 . + . ID=Physo134919;Parent=Physo134919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 536751 536769 . + 0 ID=Physo134919;Parent=Physo134919;rank=1 scaffold_34 . exon 536751 536769 . + . ID=Physo134919.1;Parent=Physo134919;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 536961 537138 . + 0 ID=Physo134919;Parent=Physo134919;rank=2 scaffold_34 . exon 536961 537138 . + . ID=Physo134919.2;Parent=Physo134919;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_34 . CDS 537246 537336 . + 0 ID=Physo134919;Parent=Physo134919;rank=3 scaffold_34 . exon 537246 537336 . + . ID=Physo134919.3;Parent=Physo134919;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 537404 538029 . + 0 ID=Physo134919;Parent=Physo134919;rank=4 scaffold_34 . exon 537404 538029 . + . ID=Physo134919.4;Parent=Physo134919;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_34 . CDS 538113 538329 . + 0 ID=Physo134919;Parent=Physo134919;rank=5 scaffold_34 . exon 538113 538329 . + . ID=Physo134919.5;Parent=Physo134919;constitutive=1;ensembl_phase=2;rank=5 scaffold_34 . exon 529932 530974 . - . ID=Physo157108.5;Parent=Physo157108;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_34 . exon 531249 531521 . - . ID=Physo157108.4;Parent=Physo157108;constitutive=1;rank=4 scaffold_34 . exon 531598 531613 . - . ID=Physo157108.3;Parent=Physo157108;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . exon 531735 531817 . - . ID=Physo157108.2;Parent=Physo157108;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . exon 531899 532498 . - . ID=Physo157108.1;Parent=Physo157108;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 545234 549357 . + . ID=Physo116496;biotype=protein_coding;external_name=estExt_Genewise1.C_340128;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 545234 549357 . + . ID=Physo116496;Parent=Physo116496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 545234 545596 . + . ID=Physo116496.1;Parent=Physo116496;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . exon 545759 546279 . + . ID=Physo116496.2;Parent=Physo116496;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_34 . CDS 546099 546279 . + 0 ID=Physo116496;Parent=Physo116496;rank=1 scaffold_34 . CDS 546340 546980 . + 0 ID=Physo116496;Parent=Physo116496;rank=2 scaffold_34 . exon 546340 546980 . + . ID=Physo116496.3;Parent=Physo116496;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . CDS 547088 547390 . + 0 ID=Physo116496;Parent=Physo116496;rank=3 scaffold_34 . exon 547088 547477 . + . ID=Physo116496.4;Parent=Physo116496;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_34 . exon 547566 547892 . + . ID=Physo116496.5;Parent=Physo116496;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_34 . exon 548052 549357 . + . ID=Physo116496.6;Parent=Physo116496;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=6 scaffold_34 ensembl protein_coding_gene 542362 542872 . + . ID=Physo134920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340156;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 542362 542872 . + . ID=Physo134920;Parent=Physo134920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 542362 542569 . + 0 ID=Physo134920;Parent=Physo134920;rank=1 scaffold_34 . exon 542362 542569 . + . ID=Physo134920.1;Parent=Physo134920;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 542661 542872 . + 0 ID=Physo134920;Parent=Physo134920;rank=2 scaffold_34 . exon 542661 542872 . + . ID=Physo134920.2;Parent=Physo134920;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . biological_region 550596 550601 0.999 - . logic_name=eponine scaffold_34 . biological_region 551282 551288 0.999 + . logic_name=eponine scaffold_34 . biological_region 551813 551817 0.999 + . logic_name=eponine scaffold_34 . biological_region 552199 552203 0.999 - . logic_name=eponine scaffold_34 . repeat_region 553197 553237 . ? . description=trf scaffold_34 . biological_region 553801 553805 0.999 + . logic_name=eponine scaffold_34 . repeat_region 554029 554036 . ? . description=dust scaffold_34 . repeat_region 555829 555974 . + . description=(CGA)n scaffold_34 . repeat_region 555909 555947 . ? . description=dust scaffold_34 . biological_region 555984 555991 0.999 - . logic_name=eponine scaffold_34 . repeat_region 556036 556076 . ? . description=trf scaffold_34 . repeat_region 556127 556200 . ? . description=trf scaffold_34 . repeat_region 557277 557297 . ? . description=dust scaffold_34 . repeat_region 557277 557297 . ? . description=trf scaffold_34 . repeat_region 557606 557915 . ? . description=dust scaffold_34 . biological_region 558408 558415 0.999 + . logic_name=eponine scaffold_34 . biological_region 558482 558488 0.999 + . logic_name=eponine scaffold_34 . biological_region 558494 558498 0.999 + . logic_name=eponine scaffold_34 . repeat_region 558498 558548 . ? . description=dust scaffold_34 . repeat_region 558502 558548 . ? . description=trf scaffold_34 . biological_region 558529 558531 0.999 - . logic_name=eponine scaffold_34 . biological_region 558578 558580 0.999 - . logic_name=eponine scaffold_34 . biological_region 558606 558612 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 551411 552917 . + . ID=Physo108827;biotype=protein_coding;description=Enolase [Source:UniProtKB/TrEMBL%3BAcc:A7XGY9];external_name=ENL;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 551411 552917 . + . ID=Physo108827;Parent=Physo108827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 551411 552917 . + . ID=Physo108827.1;Parent=Physo108827;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 551464 552828 . + 0 ID=Physo108827;Parent=Physo108827;rank=1 scaffold_34 ensembl protein_coding_gene 559431 560782 . - . ID=Physo108828;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340028;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 559431 560782 . - . ID=Physo108828;Parent=Physo108828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 559431 560782 . - . ID=Physo108828.1;Parent=Physo108828;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_34 . CDS 559502 560782 . - 0 ID=Physo108828;Parent=Physo108828;rank=1 scaffold_34 ensembl protein_coding_gene 552965 553539 . - . ID=Physo134922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340158;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 552965 553539 . - . ID=Physo134922;Parent=Physo134922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 552965 553359 . - 0 ID=Physo134922;Parent=Physo134922;rank=2 scaffold_34 . exon 552965 553359 . - . ID=Physo134922.2;Parent=Physo134922;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 553449 553539 . - 0 ID=Physo134922;Parent=Physo134922;rank=1 scaffold_34 . exon 553449 553539 . - . ID=Physo134922.1;Parent=Physo134922;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 ensembl protein_coding_gene 553785 555373 . + . ID=Physo134923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340159;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 553785 555373 . + . ID=Physo134923;Parent=Physo134923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 553785 554007 . + 0 ID=Physo134923;Parent=Physo134923;rank=1 scaffold_34 . exon 553785 554007 . + . ID=Physo134923.1;Parent=Physo134923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 554093 554763 . + 0 ID=Physo134923;Parent=Physo134923;rank=2 scaffold_34 . exon 554093 554763 . + . ID=Physo134923.2;Parent=Physo134923;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 554841 554943 . + 0 ID=Physo134923;Parent=Physo134923;rank=3 scaffold_34 . exon 554841 554943 . + . ID=Physo134923.3;Parent=Physo134923;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_34 . CDS 555007 555242 . + 0 ID=Physo134923;Parent=Physo134923;rank=4 scaffold_34 . exon 555007 555242 . + . ID=Physo134923.4;Parent=Physo134923;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 555314 555373 . + 0 ID=Physo134923;Parent=Physo134923;rank=5 scaffold_34 . exon 555314 555373 . + . ID=Physo134923.5;Parent=Physo134923;constitutive=1;rank=5 scaffold_34 ensembl protein_coding_gene 555487 556723 . + . ID=Physo134924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340160;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 555487 556723 . + . ID=Physo134924;Parent=Physo134924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 555487 556340 . + . ID=Physo134924.1;Parent=Physo134924;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_34 . CDS 555502 556340 . + 0 ID=Physo134924;Parent=Physo134924;rank=1 scaffold_34 . CDS 556426 556723 . + 0 ID=Physo134924;Parent=Physo134924;rank=2 scaffold_34 . exon 556426 556723 . + . ID=Physo134924.2;Parent=Physo134924;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 567177 567489 . + . ID=Physo108829;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340029;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 567177 567489 . + . ID=Physo108829;Parent=Physo108829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 567177 567454 . + 0 ID=Physo108829;Parent=Physo108829;rank=1 scaffold_34 . exon 567177 567454 . + . ID=Physo108829.1;Parent=Physo108829;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 567474 567489 . + 0 ID=Physo108829;Parent=Physo108829;rank=2 scaffold_34 . exon 567474 567489 . + . ID=Physo108829.2;Parent=Physo108829;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 561089 562599 . + . ID=Physo134926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340162;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 561089 562599 . + . ID=Physo134926;Parent=Physo134926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 561089 561286 . + 0 ID=Physo134926;Parent=Physo134926;rank=1 scaffold_34 . exon 561089 561286 . + . ID=Physo134926.1;Parent=Physo134926;constitutive=1;rank=1 scaffold_34 . CDS 561360 561440 . + 0 ID=Physo134926;Parent=Physo134926;rank=2 scaffold_34 . exon 561360 561440 . + . ID=Physo134926.2;Parent=Physo134926;constitutive=1;rank=2 scaffold_34 . CDS 561715 561986 . + 0 ID=Physo134926;Parent=Physo134926;rank=3 scaffold_34 . exon 561715 561986 . + . ID=Physo134926.3;Parent=Physo134926;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_34 . CDS 562031 562180 . + 0 ID=Physo134926;Parent=Physo134926;rank=4 scaffold_34 . exon 562031 562180 . + . ID=Physo134926.4;Parent=Physo134926;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_34 . CDS 562317 562599 . + 0 ID=Physo134926;Parent=Physo134926;rank=5 scaffold_34 . exon 562317 562599 . + . ID=Physo134926.5;Parent=Physo134926;constitutive=1;ensembl_phase=2;rank=5 scaffold_34 ensembl protein_coding_gene 565582 566146 . + . ID=Physo134927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340163;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 565582 566146 . + . ID=Physo134927;Parent=Physo134927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 565582 565727 . + 0 ID=Physo134927;Parent=Physo134927;rank=1 scaffold_34 . exon 565582 565727 . + . ID=Physo134927.1;Parent=Physo134927;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 565864 566146 . + 0 ID=Physo134927;Parent=Physo134927;rank=2 scaffold_34 . exon 565864 566146 . + . ID=Physo134927.2;Parent=Physo134927;constitutive=1;ensembl_phase=2;rank=2 scaffold_34 ensembl protein_coding_gene 569079 570473 . - . ID=Physo134929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340165;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 569079 570473 . - . ID=Physo134929;Parent=Physo134929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 569079 569226 . - 0 ID=Physo134929;Parent=Physo134929;rank=3 scaffold_34 . exon 569079 569226 . - . ID=Physo134929.3;Parent=Physo134929;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 569440 569447 . - 0 ID=Physo134929;Parent=Physo134929;rank=2 scaffold_34 . exon 569440 569447 . - . ID=Physo134929.2;Parent=Physo134929;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 569517 570473 . - 0 ID=Physo134929;Parent=Physo134929;rank=1 scaffold_34 . exon 569517 570473 . - . ID=Physo134929.1;Parent=Physo134929;constitutive=1;rank=1 scaffold_34 . repeat_region 572207 572214 . ? . description=dust scaffold_34 . repeat_region 572268 572292 . ? . description=trf scaffold_34 . repeat_region 572476 572520 . ? . description=trf scaffold_34 . repeat_region 572476 572521 . ? . description=trf scaffold_34 . repeat_region 572556 572670 . + . description=Polinton-1_PI scaffold_34 . biological_region 575299 575305 0.999 - . logic_name=eponine scaffold_34 . biological_region 576189 576189 0.999 + . logic_name=eponine scaffold_34 . biological_region 576240 576242 0.999 - . logic_name=eponine scaffold_34 . biological_region 576288 576290 0.999 - . logic_name=eponine scaffold_34 . biological_region 579038 579042 0.999 + . logic_name=eponine scaffold_34 ensembl protein_coding_gene 572561 573255 . + . ID=Physo134930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340166;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 572561 573255 . + . ID=Physo134930;Parent=Physo134930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 572561 572948 . + 0 ID=Physo134930;Parent=Physo134930;rank=1 scaffold_34 . exon 572561 572948 . + . ID=Physo134930.1;Parent=Physo134930;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 573146 573255 . + 0 ID=Physo134930;Parent=Physo134930;rank=2 scaffold_34 . exon 573146 573255 . + . ID=Physo134930.2;Parent=Physo134930;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 ensembl protein_coding_gene 574842 575850 . - . ID=Physo134931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340167;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 574842 575850 . - . ID=Physo134931;Parent=Physo134931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 574842 575379 . - . ID=Physo134931.2;Parent=Physo134931;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_34 . CDS 574965 575379 . - 0 ID=Physo134931;Parent=Physo134931;rank=2 scaffold_34 . CDS 575684 575850 . - 0 ID=Physo134931;Parent=Physo134931;rank=1 scaffold_34 . exon 575684 575850 . - . ID=Physo134931.1;Parent=Physo134931;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 ensembl protein_coding_gene 588939 590351 . + . ID=Physo108830;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340030;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 588939 590351 . + . ID=Physo108830;Parent=Physo108830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 588939 588964 . + 0 ID=Physo108830;Parent=Physo108830;rank=1 scaffold_34 . exon 588939 588964 . + . ID=Physo108830.1;Parent=Physo108830;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_34 . CDS 589007 589966 . + 0 ID=Physo108830;Parent=Physo108830;rank=2 scaffold_34 . exon 589007 589966 . + . ID=Physo108830.2;Parent=Physo108830;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_34 . CDS 590052 590157 . + 0 ID=Physo108830;Parent=Physo108830;rank=3 scaffold_34 . CDS 590229 590351 . + 0 ID=Physo108830;Parent=Physo108830;rank=4 scaffold_34 ensembl protein_coding_gene 581461 581950 . + . ID=Physo134932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340168;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 581461 581950 . + . ID=Physo134932;Parent=Physo134932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 581461 581500 . + 0 ID=Physo134932;Parent=Physo134932;rank=1 scaffold_34 . exon 581461 581500 . + . ID=Physo134932.1;Parent=Physo134932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . CDS 581554 581639 . + 0 ID=Physo134932;Parent=Physo134932;rank=2 scaffold_34 . exon 581554 581639 . + . ID=Physo134932.2;Parent=Physo134932;constitutive=1;ensembl_phase=1;rank=2 scaffold_34 . CDS 581705 581950 . + 0 ID=Physo134932;Parent=Physo134932;rank=3 scaffold_34 . exon 581705 581950 . + . ID=Physo134932.3;Parent=Physo134932;constitutive=1;rank=3 scaffold_34 ensembl protein_coding_gene 583426 584196 . + . ID=Physo134933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340169;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 583426 584196 . + . ID=Physo134933;Parent=Physo134933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 583426 583596 . + 0 ID=Physo134933;Parent=Physo134933;rank=1 scaffold_34 . exon 583426 583596 . + . ID=Physo134933.1;Parent=Physo134933;constitutive=1;rank=1 scaffold_34 . CDS 583666 584196 . + 0 ID=Physo134933;Parent=Physo134933;rank=2 scaffold_34 . exon 583666 584196 . + . ID=Physo134933.2;Parent=Physo134933;constitutive=1;rank=2 scaffold_34 ensembl protein_coding_gene 584291 588597 . - . ID=Physo134934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340170;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 584291 588597 . - . ID=Physo134934;Parent=Physo134934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 584291 584440 . - 0 ID=Physo134934;Parent=Physo134934;rank=6 scaffold_34 . exon 584291 584440 . - . ID=Physo134934.6;Parent=Physo134934;constitutive=1;rank=6 scaffold_34 . CDS 584474 585883 . - 0 ID=Physo134934;Parent=Physo134934;rank=5 scaffold_34 . exon 584474 585883 . - . ID=Physo134934.5;Parent=Physo134934;constitutive=1;rank=5 scaffold_34 . CDS 585994 586256 . - 0 ID=Physo134934;Parent=Physo134934;rank=4 scaffold_34 . exon 585994 586256 . - . ID=Physo134934.4;Parent=Physo134934;constitutive=1;ensembl_phase=1;rank=4 scaffold_34 . CDS 586337 586359 . - 0 ID=Physo134934;Parent=Physo134934;rank=3 scaffold_34 . exon 586337 586359 . - . ID=Physo134934.3;Parent=Physo134934;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 586548 587226 . - 0 ID=Physo134934;Parent=Physo134934;rank=2 scaffold_34 . exon 586548 587226 . - . ID=Physo134934.2;Parent=Physo134934;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_34 . CDS 587304 588597 . - 0 ID=Physo134934;Parent=Physo134934;rank=1 scaffold_34 . exon 587304 588597 . - . ID=Physo134934.1;Parent=Physo134934;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_34 . biological_region 590174 590175 0.999 - . logic_name=eponine scaffold_34 . repeat_region 593135 593165 . ? . description=dust scaffold_34 . repeat_region 593136 593165 . ? . description=trf scaffold_34 . biological_region 593290 593294 0.999 + . logic_name=eponine scaffold_34 . biological_region 593460 593463 0.999 - . logic_name=eponine scaffold_34 . biological_region 593504 593506 0.999 - . logic_name=eponine scaffold_34 . biological_region 593551 593553 0.999 - . logic_name=eponine scaffold_34 . biological_region 593560 593567 0.999 + . logic_name=eponine scaffold_34 . repeat_region 594704 594712 . ? . description=dust scaffold_34 . exon 590052 590157 . + . ID=Physo108830.3;Parent=Physo108830;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . exon 590229 590351 . + . ID=Physo108830.4;Parent=Physo108830;constitutive=1;rank=4 scaffold_34 ensembl protein_coding_gene 596086 597158 . + . ID=Physo108831;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340031;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 596086 597158 . + . ID=Physo108831;Parent=Physo108831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 596086 596181 . + 0 ID=Physo108831;Parent=Physo108831;rank=1 scaffold_34 . exon 596086 596181 . + . ID=Physo108831.1;Parent=Physo108831;constitutive=1;rank=1 scaffold_34 . CDS 596253 596384 . + 0 ID=Physo108831;Parent=Physo108831;rank=2 scaffold_34 . exon 596253 596384 . + . ID=Physo108831.2;Parent=Physo108831;constitutive=1;rank=2 scaffold_34 . CDS 596463 597158 . + 0 ID=Physo108831;Parent=Physo108831;rank=3 scaffold_34 . exon 596463 597158 . + . ID=Physo108831.3;Parent=Physo108831;constitutive=1;rank=3 scaffold_34 ensembl protein_coding_gene 591432 592946 . - . ID=Physo134936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340172;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 591432 592946 . - . ID=Physo134936;Parent=Physo134936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 591432 592946 . - 0 ID=Physo134936;Parent=Physo134936;rank=1 scaffold_34 . exon 591432 592946 . - . ID=Physo134936.1;Parent=Physo134936;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 593164 593712 . - . ID=Physo134937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340173;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 593164 593712 . - . ID=Physo134937;Parent=Physo134937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 593164 593712 . - 0 ID=Physo134937;Parent=Physo134937;rank=1 scaffold_34 . exon 593164 593712 . - . ID=Physo134937.1;Parent=Physo134937;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 597269 602652 . - . ID=Physo134939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340175;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 597269 602652 . - . ID=Physo134939;Parent=Physo134939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 597269 598166 . - 0 ID=Physo134939;Parent=Physo134939;rank=10 scaffold_34 . exon 597269 598166 . - . ID=Physo134939.10;Parent=Physo134939;constitutive=1;ensembl_phase=2;rank=10 scaffold_34 . CDS 598235 598843 . - 0 ID=Physo134939;Parent=Physo134939;rank=9 scaffold_34 . exon 598235 598843 . - . ID=Physo134939.9;Parent=Physo134939;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_34 . CDS 598923 599083 . - 0 ID=Physo134939;Parent=Physo134939;rank=8 scaffold_34 . exon 598923 599083 . - . ID=Physo134939.8;Parent=Physo134939;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_34 . CDS 599148 599504 . - 0 ID=Physo134939;Parent=Physo134939;rank=7 scaffold_34 . exon 599148 599504 . - . ID=Physo134939.7;Parent=Physo134939;constitutive=1;rank=7 scaffold_34 . CDS 599569 600138 . - 0 ID=Physo134939;Parent=Physo134939;rank=6 scaffold_34 . exon 599569 600138 . - . ID=Physo134939.6;Parent=Physo134939;constitutive=1;rank=6 scaffold_34 . CDS 600240 600443 . - 0 ID=Physo134939;Parent=Physo134939;rank=5 scaffold_34 . CDS 600508 601140 . - 0 ID=Physo134939;Parent=Physo134939;rank=4 scaffold_34 . CDS 601186 601301 . - 0 ID=Physo134939;Parent=Physo134939;rank=3 scaffold_34 . CDS 601777 602401 . - 0 ID=Physo134939;Parent=Physo134939;rank=2 scaffold_34 . CDS 602479 602652 . - 0 ID=Physo134939;Parent=Physo134939;rank=1 scaffold_34 ensembl protein_coding_gene 606190 607521 . - . ID=Physo108832;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_340032;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 606190 607521 . - . ID=Physo108832;Parent=Physo108832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 606190 607521 . - . ID=Physo108832.1;Parent=Physo108832;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 606269 607516 . - 0 ID=Physo108832;Parent=Physo108832;rank=1 scaffold_34 ensembl protein_coding_gene 609596 611335 . + . ID=Physo116538;biotype=protein_coding;external_name=estExt_Genewise1.C_340170;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 609596 611335 . + . ID=Physo116538;Parent=Physo116538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 609596 611335 . + . ID=Physo116538.1;Parent=Physo116538;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 609665 611335 . + 0 ID=Physo116538;Parent=Physo116538;rank=1 scaffold_34 . exon 600240 600443 . - . ID=Physo134939.5;Parent=Physo134939;constitutive=1;rank=5 scaffold_34 . exon 600508 601140 . - . ID=Physo134939.4;Parent=Physo134939;constitutive=1;rank=4 scaffold_34 . exon 601186 601301 . - . ID=Physo134939.3;Parent=Physo134939;constitutive=1;ensembl_phase=1;rank=3 scaffold_34 . exon 601777 602401 . - . ID=Physo134939.2;Parent=Physo134939;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_34 . exon 602479 602652 . - . ID=Physo134939.1;Parent=Physo134939;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 603550 604638 . - . ID=Physo134940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340176;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 603550 604638 . - . ID=Physo134940;Parent=Physo134940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 603550 604368 . - 0 ID=Physo134940;Parent=Physo134940;rank=2 scaffold_34 . exon 603550 604368 . - . ID=Physo134940.2;Parent=Physo134940;constitutive=1;rank=2 scaffold_34 . CDS 604445 604603 . - 0 ID=Physo134940;Parent=Physo134940;rank=1 scaffold_34 . exon 604445 604638 . - . ID=Physo134940.1;Parent=Physo134940;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 605061 605978 . - . ID=Physo134941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340177;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 605061 605978 . - . ID=Physo134941;Parent=Physo134941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 605061 605978 . - 0 ID=Physo134941;Parent=Physo134941;rank=1 scaffold_34 . exon 605061 605978 . - . ID=Physo134941.1;Parent=Physo134941;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 608091 608701 . + . ID=Physo134943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340179;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 608091 608701 . + . ID=Physo134943;Parent=Physo134943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 608091 608104 . + . ID=Physo134943.1;Parent=Physo134943;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_34 . exon 608156 608701 . + . ID=Physo134943.2;Parent=Physo134943;constitutive=1;ensembl_phase=-1;rank=2 scaffold_34 . CDS 608225 608701 . + 0 ID=Physo134943;Parent=Physo134943;rank=1 scaffold_34 . biological_region 609881 609883 0.999 - . logic_name=eponine scaffold_34 . biological_region 610619 610620 0.999 + . logic_name=eponine scaffold_34 . repeat_region 611016 611047 . ? . description=trf scaffold_34 . biological_region 616217 616219 0.999 - . logic_name=eponine scaffold_34 . repeat_region 617781 617810 . ? . description=trf scaffold_34 . biological_region 618684 618684 0.999 + . logic_name=eponine scaffold_34 . biological_region 618925 618930 0.999 - . logic_name=eponine scaffold_34 ensembl protein_coding_gene 617501 619102 . - . ID=Physo134944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340180;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 617501 619102 . - . ID=Physo134944;Parent=Physo134944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 617501 617848 . - 0 ID=Physo134944;Parent=Physo134944;rank=5 scaffold_34 . exon 617501 617848 . - . ID=Physo134944.5;Parent=Physo134944;constitutive=1;rank=5 scaffold_34 . CDS 617928 618032 . - 0 ID=Physo134944;Parent=Physo134944;rank=4 scaffold_34 . exon 617928 618032 . - . ID=Physo134944.4;Parent=Physo134944;constitutive=1;rank=4 scaffold_34 . CDS 618121 618193 . - 0 ID=Physo134944;Parent=Physo134944;rank=3 scaffold_34 . exon 618121 618193 . - . ID=Physo134944.3;Parent=Physo134944;constitutive=1;ensembl_phase=2;rank=3 scaffold_34 . CDS 618259 618539 . - 0 ID=Physo134944;Parent=Physo134944;rank=2 scaffold_34 . exon 618259 618539 . - . ID=Physo134944.2;Parent=Physo134944;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_34 . CDS 618611 619102 . - 0 ID=Physo134944;Parent=Physo134944;rank=1 scaffold_34 . exon 618611 619102 . - . ID=Physo134944.1;Parent=Physo134944;constitutive=1;rank=1 scaffold_34 ensembl protein_coding_gene 619293 619799 . + . ID=Physo134945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340181;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 619293 619799 . + . ID=Physo134945;Parent=Physo134945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 619293 619799 . + 0 ID=Physo134945;Parent=Physo134945;rank=1 scaffold_34 . exon 619293 619799 . + . ID=Physo134945.1;Parent=Physo134945;constitutive=1;rank=1 scaffold_34 . repeat_region 621267 621299 . ? . description=dust scaffold_34 . repeat_region 623489 623496 . ? . description=dust scaffold_34 ensembl protein_coding_gene 620128 621794 . - . ID=Physo134946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340182;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 620128 621794 . - . ID=Physo134946;Parent=Physo134946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 620128 621500 . - . ID=Physo134946.2;Parent=Physo134946;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_34 . CDS 620451 621500 . - 0 ID=Physo134946;Parent=Physo134946;rank=2 scaffold_34 . CDS 621581 621664 . - 0 ID=Physo134946;Parent=Physo134946;rank=1 scaffold_34 . exon 621581 621794 . - . ID=Physo134946.1;Parent=Physo134946;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 ensembl protein_coding_gene 623694 624948 . + . ID=Physo134947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340183;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 623694 624948 . + . ID=Physo134947;Parent=Physo134947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . exon 623694 624156 . + . ID=Physo134947.1;Parent=Physo134947;constitutive=1;ensembl_phase=-1;rank=1 scaffold_34 . CDS 623905 624156 . + 0 ID=Physo134947;Parent=Physo134947;rank=1 scaffold_34 . CDS 624256 624420 . + 0 ID=Physo134947;Parent=Physo134947;rank=2 scaffold_34 . exon 624256 624420 . + . ID=Physo134947.2;Parent=Physo134947;constitutive=1;rank=2 scaffold_34 . CDS 624526 624633 . + 0 ID=Physo134947;Parent=Physo134947;rank=3 scaffold_34 . exon 624526 624633 . + . ID=Physo134947.3;Parent=Physo134947;constitutive=1;rank=3 scaffold_34 . CDS 624715 624948 . + 0 ID=Physo134947;Parent=Physo134947;rank=4 scaffold_34 . exon 624715 624948 . + . ID=Physo134947.4;Parent=Physo134947;constitutive=1;rank=4 scaffold_34 ensembl protein_coding_gene 625011 627249 . - . ID=Physo134948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_340184;logic_name=jgi_physo1_1 scaffold_34 ensembl transcript 625011 627249 . - . ID=Physo134948;Parent=Physo134948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_34 . CDS 625011 625262 . - 0 ID=Physo134948;Parent=Physo134948;rank=4 scaffold_34 . exon 625011 625262 . - . ID=Physo134948.4;Parent=Physo134948;constitutive=1;rank=4 scaffold_34 . CDS 625341 625523 . - 0 ID=Physo134948;Parent=Physo134948;rank=3 scaffold_34 . exon 625341 625523 . - . ID=Physo134948.3;Parent=Physo134948;constitutive=1;rank=3 scaffold_34 . CDS 625597 626658 . - 0 ID=Physo134948;Parent=Physo134948;rank=2 scaffold_34 . exon 625597 626658 . - . ID=Physo134948.2;Parent=Physo134948;constitutive=1;rank=2 scaffold_34 . CDS 626725 627249 . - 0 ID=Physo134948;Parent=Physo134948;rank=1 scaffold_34 . exon 626725 627249 . - . ID=Physo134948.1;Parent=Physo134948;constitutive=1;rank=1 scaffold_34 . biological_region 630394 630395 0.999 - . logic_name=eponine scaffold_34 . biological_region 631028 631032 0.999 + . logic_name=eponine scaffold_34 . biological_region 632176 632182 0.999 - . logic_name=eponine scaffold_34 . repeat_region 642232 642246 . ? . description=dust scaffold_34 . repeat_region 644831 644838 . ? . description=dust scaffold_34 . repeat_region 645785 645825 . ? . description=dust scaffold_34 . repeat_region 647042 647049 . ? . description=dust scaffold_34 . repeat_region 647595 647602 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_33 1 656579 scaffold_33 . repeat_region 94 161 . ? . description=trf scaffold_33 . repeat_region 1214 1281 . ? . description=trf scaffold_33 . biological_region 2975 2977 0.999 - . logic_name=eponine scaffold_33 . repeat_region 4947 4957 . ? . description=dust scaffold_33 . repeat_region 5614 5758 . ? . description=trf scaffold_33 . repeat_region 6058 6065 . ? . description=dust scaffold_33 . repeat_region 9216 9231 . ? . description=dust scaffold_33 . biological_region 9383 9383 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 701 1108 . - . ID=Physo134611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330001;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 701 1108 . - . ID=Physo134611;Parent=Physo134611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 701 1108 . - 0 ID=Physo134611;Parent=Physo134611;rank=1 scaffold_33 . exon 701 1108 . - . ID=Physo134611.1;Parent=Physo134611;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 2048 3337 . + . ID=Physo134612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330002;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 2048 3337 . + . ID=Physo134612;Parent=Physo134612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 2048 3337 . + 0 ID=Physo134612;Parent=Physo134612;rank=1 scaffold_33 . exon 2048 3337 . + . ID=Physo134612.1;Parent=Physo134612;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 3466 4710 . - . ID=Physo134613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330003;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 3466 4710 . - . ID=Physo134613;Parent=Physo134613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 3466 4710 . - . ID=Physo134613.1;Parent=Physo134613;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_33 . CDS 4186 4710 . - 0 ID=Physo134613;Parent=Physo134613;rank=1 scaffold_33 ensembl protein_coding_gene 6692 7963 . - . ID=Physo134614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330004;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 6692 7963 . - . ID=Physo134614;Parent=Physo134614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 6692 7963 . - 0 ID=Physo134614;Parent=Physo134614;rank=1 scaffold_33 . exon 6692 7963 . - . ID=Physo134614.1;Parent=Physo134614;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 9315 10568 . - . ID=Physo134615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330005;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 9315 10568 . - . ID=Physo134615;Parent=Physo134615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 9315 10568 . - 0 ID=Physo134615;Parent=Physo134615;rank=1 scaffold_33 . exon 9315 10568 . - . ID=Physo134615.1;Parent=Physo134615;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 16464 17266 . + . ID=Physo134616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330006;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 16464 17266 . + . ID=Physo134616;Parent=Physo134616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 16464 16625 . + 0 ID=Physo134616;Parent=Physo134616;rank=1 scaffold_33 . exon 16464 16625 . + . ID=Physo134616.1;Parent=Physo134616;constitutive=1;rank=1 scaffold_33 . CDS 16654 16896 . + 0 ID=Physo134616;Parent=Physo134616;rank=2 scaffold_33 . exon 16654 16896 . + . ID=Physo134616.2;Parent=Physo134616;constitutive=1;rank=2 scaffold_33 . CDS 16997 17266 . + 0 ID=Physo134616;Parent=Physo134616;rank=3 scaffold_33 . exon 16997 17266 . + . ID=Physo134616.3;Parent=Physo134616;constitutive=1;rank=3 scaffold_33 ensembl protein_coding_gene 20267 20719 . + . ID=Physo134617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330007;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 20267 20719 . + . ID=Physo134617;Parent=Physo134617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 20267 20719 . + 0 ID=Physo134617;Parent=Physo134617;rank=1 scaffold_33 . exon 20267 20719 . + . ID=Physo134617.1;Parent=Physo134617;constitutive=1;rank=1 scaffold_33 . biological_region 32550 32553 0.999 + . logic_name=eponine scaffold_33 . repeat_region 33688 33695 . ? . description=dust scaffold_33 . repeat_region 34480 34513 . ? . description=trf scaffold_33 . repeat_region 35477 35487 . ? . description=dust scaffold_33 . repeat_region 37853 37901 . ? . description=trf scaffold_33 ensembl protein_coding_gene 32385 32873 . + . ID=Physo134618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330008;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 32385 32873 . + . ID=Physo134618;Parent=Physo134618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 32385 32873 . + 0 ID=Physo134618;Parent=Physo134618;rank=1 scaffold_33 . exon 32385 32873 . + . ID=Physo134618.1;Parent=Physo134618;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 39840 40499 . - . ID=Physo134619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330009;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 39840 40499 . - . ID=Physo134619;Parent=Physo134619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 39840 40499 . - 0 ID=Physo134619;Parent=Physo134619;rank=1 scaffold_33 . exon 39840 40499 . - . ID=Physo134619.1;Parent=Physo134619;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 41906 43705 . - . ID=Physo134620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330010;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 41906 43705 . - . ID=Physo134620;Parent=Physo134620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 41906 42309 . - 0 ID=Physo134620;Parent=Physo134620;rank=6 scaffold_33 . exon 41906 42309 . - . ID=Physo134620.6;Parent=Physo134620;constitutive=1;ensembl_phase=1;rank=6 scaffold_33 . CDS 42381 42673 . - 0 ID=Physo134620;Parent=Physo134620;rank=5 scaffold_33 . exon 42381 42673 . - . ID=Physo134620.5;Parent=Physo134620;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_33 . CDS 42754 42842 . - 0 ID=Physo134620;Parent=Physo134620;rank=4 scaffold_33 . exon 42754 42842 . - . ID=Physo134620.4;Parent=Physo134620;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_33 . CDS 42966 43260 . - 0 ID=Physo134620;Parent=Physo134620;rank=3 scaffold_33 . exon 42966 43260 . - . ID=Physo134620.3;Parent=Physo134620;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 43336 43503 . - 0 ID=Physo134620;Parent=Physo134620;rank=2 scaffold_33 . exon 43336 43503 . - . ID=Physo134620.2;Parent=Physo134620;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 43674 43705 . - 0 ID=Physo134620;Parent=Physo134620;rank=1 scaffold_33 . exon 43674 43705 . - . ID=Physo134620.1;Parent=Physo134620;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 44203 45260 . + . ID=Physo134621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330011;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 44203 45260 . + . ID=Physo134621;Parent=Physo134621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 44203 44321 . + 0 ID=Physo134621;Parent=Physo134621;rank=1 scaffold_33 . exon 44203 44321 . + . ID=Physo134621.1;Parent=Physo134621;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 44395 45019 . + 0 ID=Physo134621;Parent=Physo134621;rank=2 scaffold_33 . exon 44395 45019 . + . ID=Physo134621.2;Parent=Physo134621;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 45066 45260 . + 0 ID=Physo134621;Parent=Physo134621;rank=3 scaffold_33 . exon 45066 45260 . + . ID=Physo134621.3;Parent=Physo134621;constitutive=1;rank=3 scaffold_33 ensembl protein_coding_gene 47333 48229 . - . ID=Physo134622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330012;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 47333 48229 . - . ID=Physo134622;Parent=Physo134622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 47333 48229 . - 0 ID=Physo134622;Parent=Physo134622;rank=1 scaffold_33 . exon 47333 48229 . - . ID=Physo134622.1;Parent=Physo134622;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 49054 52891 . - . ID=Physo134623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330013;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 49054 52891 . - . ID=Physo134623;Parent=Physo134623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 49054 49080 . - 0 ID=Physo134623;Parent=Physo134623;rank=7 scaffold_33 . exon 49054 49080 . - . ID=Physo134623.7;Parent=Physo134623;constitutive=1;rank=7 scaffold_33 . CDS 49356 50060 . - 0 ID=Physo134623;Parent=Physo134623;rank=6 scaffold_33 . exon 49356 50060 . - . ID=Physo134623.6;Parent=Physo134623;constitutive=1;rank=6 scaffold_33 . CDS 50148 50333 . - 0 ID=Physo134623;Parent=Physo134623;rank=5 scaffold_33 . CDS 50404 50693 . - 0 ID=Physo134623;Parent=Physo134623;rank=4 scaffold_33 . CDS 51231 51415 . - 0 ID=Physo134623;Parent=Physo134623;rank=3 scaffold_33 . CDS 51493 52485 . - 0 ID=Physo134623;Parent=Physo134623;rank=2 scaffold_33 . CDS 52572 52891 . - 0 ID=Physo134623;Parent=Physo134623;rank=1 scaffold_33 . biological_region 51616 51622 0.999 - . logic_name=eponine scaffold_33 . biological_region 51662 51663 0.999 - . logic_name=eponine scaffold_33 . biological_region 52697 52705 0.999 - . logic_name=eponine scaffold_33 . biological_region 52709 52715 0.999 + . logic_name=eponine scaffold_33 . biological_region 52780 52790 0.999 + . logic_name=eponine scaffold_33 . biological_region 52844 52849 0.999 - . logic_name=eponine scaffold_33 . biological_region 52891 52894 0.999 - . logic_name=eponine scaffold_33 . repeat_region 53953 53966 . ? . description=dust scaffold_33 . repeat_region 54032 54059 . ? . description=trf scaffold_33 . repeat_region 54650 54687 . ? . description=trf scaffold_33 . repeat_region 55287 55294 . ? . description=dust scaffold_33 . biological_region 55861 55868 0.999 - . logic_name=eponine scaffold_33 . biological_region 55887 55889 0.999 + . logic_name=eponine scaffold_33 . biological_region 55915 55925 0.999 + . logic_name=eponine scaffold_33 . biological_region 55982 55991 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 56446 57619 . + . ID=Physo116350;biotype=protein_coding;external_name=estExt_Genewise1.C_330032;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 56446 57619 . + . ID=Physo116350;Parent=Physo116350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 56446 56500 . + . ID=Physo116350.1;Parent=Physo116350;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_33 . exon 56567 57181 . + . ID=Physo116350.2;Parent=Physo116350;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_33 . CDS 56671 57181 . + 0 ID=Physo116350;Parent=Physo116350;rank=1 scaffold_33 . CDS 57256 57309 . + 0 ID=Physo116350;Parent=Physo116350;rank=2 scaffold_33 . exon 57256 57309 . + . ID=Physo116350.3;Parent=Physo116350;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 57373 57472 . + 0 ID=Physo116350;Parent=Physo116350;rank=3 scaffold_33 . exon 57373 57472 . + . ID=Physo116350.4;Parent=Physo116350;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_33 . CDS 57538 57619 . + 0 ID=Physo116350;Parent=Physo116350;rank=4 scaffold_33 . exon 57538 57619 . + . ID=Physo116350.5;Parent=Physo116350;constitutive=1;ensembl_phase=2;rank=5 scaffold_33 . exon 50148 50333 . - . ID=Physo134623.5;Parent=Physo134623;constitutive=1;rank=5 scaffold_33 . exon 50404 50693 . - . ID=Physo134623.4;Parent=Physo134623;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . exon 51231 51415 . - . ID=Physo134623.3;Parent=Physo134623;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_33 . exon 51493 52485 . - . ID=Physo134623.2;Parent=Physo134623;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . exon 52572 52891 . - . ID=Physo134623.1;Parent=Physo134623;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 54275 55631 . + . ID=Physo134624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330014;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 54275 55631 . + . ID=Physo134624;Parent=Physo134624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 54275 54508 . + 0 ID=Physo134624;Parent=Physo134624;rank=1 scaffold_33 . exon 54275 54508 . + . ID=Physo134624.1;Parent=Physo134624;constitutive=1;rank=1 scaffold_33 . CDS 54788 54976 . + 0 ID=Physo134624;Parent=Physo134624;rank=2 scaffold_33 . exon 54788 54976 . + . ID=Physo134624.2;Parent=Physo134624;constitutive=1;rank=2 scaffold_33 . CDS 55036 55281 . + 0 ID=Physo134624;Parent=Physo134624;rank=3 scaffold_33 . exon 55036 55281 . + . ID=Physo134624.3;Parent=Physo134624;constitutive=1;rank=3 scaffold_33 . CDS 55431 55439 . + 0 ID=Physo134624;Parent=Physo134624;rank=4 scaffold_33 . exon 55431 55439 . + . ID=Physo134624.4;Parent=Physo134624;constitutive=1;rank=4 scaffold_33 . CDS 55503 55631 . + 0 ID=Physo134624;Parent=Physo134624;rank=5 scaffold_33 . exon 55503 55631 . + . ID=Physo134624.5;Parent=Physo134624;constitutive=1;rank=5 scaffold_33 ensembl protein_coding_gene 60322 61539 . - . ID=Physo134626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330016;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 60322 61539 . - . ID=Physo134626;Parent=Physo134626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 60322 61539 . - 0 ID=Physo134626;Parent=Physo134626;rank=1 scaffold_33 . exon 60322 61539 . - . ID=Physo134626.1;Parent=Physo134626;constitutive=1;rank=1 scaffold_33 . repeat_region 69948 69991 . ? . description=trf scaffold_33 . biological_region 70609 70612 0.999 - . logic_name=eponine scaffold_33 . repeat_region 71292 71337 . ? . description=trf scaffold_33 . biological_region 75600 75601 0.999 + . logic_name=eponine scaffold_33 . repeat_region 76105 76148 . ? . description=trf scaffold_33 ensembl protein_coding_gene 74331 75225 . - . ID=Physo134627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330017;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 74331 75225 . - . ID=Physo134627;Parent=Physo134627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 74331 74512 . - 0 ID=Physo134627;Parent=Physo134627;rank=3 scaffold_33 . exon 74331 74512 . - . ID=Physo134627.3;Parent=Physo134627;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 74548 74848 . - 0 ID=Physo134627;Parent=Physo134627;rank=2 scaffold_33 . exon 74548 74848 . - . ID=Physo134627.2;Parent=Physo134627;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . CDS 74899 75225 . - 0 ID=Physo134627;Parent=Physo134627;rank=1 scaffold_33 . exon 74899 75225 . - . ID=Physo134627.1;Parent=Physo134627;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 75538 80128 . + . ID=Physo134628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330018;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 75538 80128 . + . ID=Physo134628;Parent=Physo134628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 75538 75779 . + 0 ID=Physo134628;Parent=Physo134628;rank=1 scaffold_33 . exon 75538 75779 . + . ID=Physo134628.1;Parent=Physo134628;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 76051 76117 . + 0 ID=Physo134628;Parent=Physo134628;rank=2 scaffold_33 . exon 76051 76117 . + . ID=Physo134628.2;Parent=Physo134628;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 76197 76755 . + 0 ID=Physo134628;Parent=Physo134628;rank=3 scaffold_33 . exon 76197 76755 . + . ID=Physo134628.3;Parent=Physo134628;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_33 . CDS 76966 77253 . + 0 ID=Physo134628;Parent=Physo134628;rank=4 scaffold_33 . exon 76966 77253 . + . ID=Physo134628.4;Parent=Physo134628;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 77959 78460 . + 0 ID=Physo134628;Parent=Physo134628;rank=5 scaffold_33 . exon 77959 78460 . + . ID=Physo134628.5;Parent=Physo134628;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_33 . CDS 78493 78580 . + 0 ID=Physo134628;Parent=Physo134628;rank=6 scaffold_33 . exon 78493 78580 . + . ID=Physo134628.6;Parent=Physo134628;constitutive=1;ensembl_phase=2;rank=6 scaffold_33 . CDS 78602 78663 . + 0 ID=Physo134628;Parent=Physo134628;rank=7 scaffold_33 . exon 78602 78663 . + . ID=Physo134628.7;Parent=Physo134628;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_33 . CDS 78785 79054 . + 0 ID=Physo134628;Parent=Physo134628;rank=8 scaffold_33 . exon 78785 79054 . + . ID=Physo134628.8;Parent=Physo134628;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_33 . CDS 79223 79434 . + 0 ID=Physo134628;Parent=Physo134628;rank=9 scaffold_33 . exon 79223 79434 . + . ID=Physo134628.9;Parent=Physo134628;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_33 . CDS 79561 79704 . + 0 ID=Physo134628;Parent=Physo134628;rank=10 scaffold_33 . exon 79561 79704 . + . ID=Physo134628.10;Parent=Physo134628;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_33 . CDS 79765 80032 . + 0 ID=Physo134628;Parent=Physo134628;rank=11 scaffold_33 . CDS 80092 80128 . + 0 ID=Physo134628;Parent=Physo134628;rank=12 scaffold_33 . repeat_region 83659 83666 . ? . description=dust scaffold_33 ensembl protein_coding_gene 80366 80509 . - . ID=Physo116351;biotype=protein_coding;external_name=estExt_Genewise1.C_330033;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 80366 80509 . - . ID=Physo116351;Parent=Physo116351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 80366 80509 . - 0 ID=Physo116351;Parent=Physo116351;rank=1 scaffold_33 . exon 80366 80509 . - . ID=Physo116351.1;Parent=Physo116351;constitutive=1;rank=1 scaffold_33 . exon 79765 80032 . + . ID=Physo134628.11;Parent=Physo134628;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_33 . exon 80092 80128 . + . ID=Physo134628.12;Parent=Physo134628;constitutive=1;ensembl_phase=2;rank=12 scaffold_33 ensembl protein_coding_gene 80601 83046 . - . ID=Physo134629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330019;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 80601 83046 . - . ID=Physo134629;Parent=Physo134629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 80601 81110 . - 0 ID=Physo134629;Parent=Physo134629;rank=4 scaffold_33 . exon 80601 81110 . - . ID=Physo134629.4;Parent=Physo134629;constitutive=1;rank=4 scaffold_33 . CDS 81269 81515 . - 0 ID=Physo134629;Parent=Physo134629;rank=3 scaffold_33 . exon 81269 81515 . - . ID=Physo134629.3;Parent=Physo134629;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 81571 81768 . - 0 ID=Physo134629;Parent=Physo134629;rank=2 scaffold_33 . exon 81571 81768 . - . ID=Physo134629.2;Parent=Physo134629;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 82367 83046 . - 0 ID=Physo134629;Parent=Physo134629;rank=1 scaffold_33 . exon 82367 83046 . - . ID=Physo134629.1;Parent=Physo134629;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 84018 84934 . + . ID=Physo134630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330020;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 84018 84934 . + . ID=Physo134630;Parent=Physo134630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 84018 84216 . + 0 ID=Physo134630;Parent=Physo134630;rank=1 scaffold_33 . exon 84018 84216 . + . ID=Physo134630.1;Parent=Physo134630;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 84273 84934 . + 0 ID=Physo134630;Parent=Physo134630;rank=2 scaffold_33 . exon 84273 84934 . + . ID=Physo134630.2;Parent=Physo134630;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . biological_region 90020 90025 0.999 - . logic_name=eponine scaffold_33 . biological_region 91205 91205 0.999 + . logic_name=eponine scaffold_33 . repeat_region 95219 95767 . + . description=GypsyPi-1c_I-int scaffold_33 . biological_region 95465 95467 0.999 + . logic_name=eponine scaffold_33 . repeat_region 95896 96158 . ? . description=trf scaffold_33 . biological_region 96438 96438 0.999 + . logic_name=eponine scaffold_33 . repeat_region 96487 99350 . + . description=GypsyPi-1c_I-int scaffold_33 ensembl protein_coding_gene 94289 99917 . + . ID=Physo134631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330021;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 94289 99917 . + . ID=Physo134631;Parent=Physo134631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 94289 95207 . + 0 ID=Physo134631;Parent=Physo134631;rank=1 scaffold_33 . exon 94289 95207 . + . ID=Physo134631.1;Parent=Physo134631;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 95369 95923 . + 0 ID=Physo134631;Parent=Physo134631;rank=2 scaffold_33 . exon 95369 95923 . + . ID=Physo134631.2;Parent=Physo134631;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 96020 97154 . + 0 ID=Physo134631;Parent=Physo134631;rank=3 scaffold_33 . exon 96020 97154 . + . ID=Physo134631.3;Parent=Physo134631;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_33 . CDS 97277 98367 . + 0 ID=Physo134631;Parent=Physo134631;rank=4 scaffold_33 . exon 97277 98367 . + . ID=Physo134631.4;Parent=Physo134631;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 98579 98953 . + 0 ID=Physo134631;Parent=Physo134631;rank=5 scaffold_33 . exon 98579 98953 . + . ID=Physo134631.5;Parent=Physo134631;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_33 . CDS 99196 99917 . + 0 ID=Physo134631;Parent=Physo134631;rank=6 scaffold_33 . exon 99196 99917 . + . ID=Physo134631.6;Parent=Physo134631;constitutive=1;ensembl_phase=1;rank=6 scaffold_33 . repeat_region 109366 109379 . ? . description=dust scaffold_33 ensembl protein_coding_gene 100267 101102 . - . ID=Physo134632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330022;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 100267 101102 . - . ID=Physo134632;Parent=Physo134632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 100267 100275 . - 0 ID=Physo134632;Parent=Physo134632;rank=3 scaffold_33 . exon 100267 100275 . - . ID=Physo134632.3;Parent=Physo134632;constitutive=1;rank=3 scaffold_33 . CDS 100377 100884 . - 0 ID=Physo134632;Parent=Physo134632;rank=2 scaffold_33 . exon 100377 100884 . - . ID=Physo134632.2;Parent=Physo134632;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 100972 101102 . - 0 ID=Physo134632;Parent=Physo134632;rank=1 scaffold_33 . exon 100972 101102 . - . ID=Physo134632.1;Parent=Physo134632;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 104355 106338 . - . ID=Physo134633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330023;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 104355 106338 . - . ID=Physo134633;Parent=Physo134633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 104355 104614 . - 0 ID=Physo134633;Parent=Physo134633;rank=4 scaffold_33 . exon 104355 104614 . - . ID=Physo134633.4;Parent=Physo134633;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 104904 105449 . - 0 ID=Physo134633;Parent=Physo134633;rank=3 scaffold_33 . exon 104904 105449 . - . ID=Physo134633.3;Parent=Physo134633;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 105514 105565 . - 0 ID=Physo134633;Parent=Physo134633;rank=2 scaffold_33 . exon 105514 105565 . - . ID=Physo134633.2;Parent=Physo134633;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . CDS 105595 106338 . - 0 ID=Physo134633;Parent=Physo134633;rank=1 scaffold_33 . exon 105595 106338 . - . ID=Physo134633.1;Parent=Physo134633;constitutive=1;rank=1 scaffold_33 . biological_region 118132 118132 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 110345 112105 . - . ID=Physo134634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330024;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 110345 112105 . - . ID=Physo134634;Parent=Physo134634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 110345 112105 . - 0 ID=Physo134634;Parent=Physo134634;rank=1 scaffold_33 . exon 110345 112105 . - . ID=Physo134634.1;Parent=Physo134634;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 117337 119169 . - . ID=Physo134635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330025;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 117337 119169 . - . ID=Physo134635;Parent=Physo134635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 117337 119169 . - 0 ID=Physo134635;Parent=Physo134635;rank=1 scaffold_33 . exon 117337 119169 . - . ID=Physo134635.1;Parent=Physo134635;constitutive=1;rank=1 scaffold_33 . repeat_region 121979 122006 . ? . description=trf scaffold_33 . repeat_region 123151 123280 . ? . description=trf scaffold_33 . repeat_region 127881 127927 . ? . description=trf scaffold_33 . repeat_region 128213 128395 . + . description=GypsyPi-1c_LTR scaffold_33 . repeat_region 128396 129421 . + . description=GypsyPi-1c_I-int scaffold_33 ensembl protein_coding_gene 120335 121951 . - . ID=Physo134636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330026;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 120335 121951 . - . ID=Physo134636;Parent=Physo134636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 120335 121951 . - 0 ID=Physo134636;Parent=Physo134636;rank=1 scaffold_33 . exon 120335 121951 . - . ID=Physo134636.1;Parent=Physo134636;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 123979 126131 . + . ID=Physo134637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330027;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 123979 126131 . + . ID=Physo134637;Parent=Physo134637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 123979 124723 . + . ID=Physo134637.1;Parent=Physo134637;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_33 . CDS 124144 124723 . + 0 ID=Physo134637;Parent=Physo134637;rank=1 scaffold_33 . CDS 124794 126130 . + 0 ID=Physo134637;Parent=Physo134637;rank=2 scaffold_33 . exon 124794 126131 . + . ID=Physo134637.2;Parent=Physo134637;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_33 ensembl protein_coding_gene 128483 129430 . + . ID=Physo134638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330028;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 128483 129430 . + . ID=Physo134638;Parent=Physo134638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 128483 128719 . + 0 ID=Physo134638;Parent=Physo134638;rank=1 scaffold_33 . exon 128483 128719 . + . ID=Physo134638.1;Parent=Physo134638;constitutive=1;rank=1 scaffold_33 . CDS 128912 129430 . + 0 ID=Physo134638;Parent=Physo134638;rank=2 scaffold_33 . exon 128912 129430 . + . ID=Physo134638.2;Parent=Physo134638;constitutive=1;rank=2 scaffold_33 . biological_region 133553 133559 0.999 - . logic_name=eponine scaffold_33 . biological_region 134239 134241 0.999 + . logic_name=eponine scaffold_33 . biological_region 134288 134291 0.999 + . logic_name=eponine scaffold_33 . biological_region 135712 135712 0.999 - . logic_name=eponine scaffold_33 . biological_region 136071 136076 0.999 - . logic_name=eponine scaffold_33 . biological_region 136280 136282 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 130275 133848 . + . ID=Physo134639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330029;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 130275 133848 . + . ID=Physo134639;Parent=Physo134639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 130275 133793 . + 0 ID=Physo134639;Parent=Physo134639;rank=1 scaffold_33 . exon 130275 133793 . + . ID=Physo134639.1;Parent=Physo134639;constitutive=1;rank=1 scaffold_33 . CDS 133840 133848 . + 0 ID=Physo134639;Parent=Physo134639;rank=2 scaffold_33 . exon 133840 133848 . + . ID=Physo134639.2;Parent=Physo134639;constitutive=1;rank=2 scaffold_33 ensembl protein_coding_gene 134131 136338 . - . ID=Physo134640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330030;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 134131 136338 . - . ID=Physo134640;Parent=Physo134640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 134131 135120 . - 0 ID=Physo134640;Parent=Physo134640;rank=4 scaffold_33 . exon 134131 135120 . - . ID=Physo134640.4;Parent=Physo134640;constitutive=1;rank=4 scaffold_33 . CDS 135151 135288 . - 0 ID=Physo134640;Parent=Physo134640;rank=3 scaffold_33 . exon 135151 135288 . - . ID=Physo134640.3;Parent=Physo134640;constitutive=1;rank=3 scaffold_33 . CDS 135314 135320 . - 0 ID=Physo134640;Parent=Physo134640;rank=2 scaffold_33 . exon 135314 135320 . - . ID=Physo134640.2;Parent=Physo134640;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 135392 136338 . - 0 ID=Physo134640;Parent=Physo134640;rank=1 scaffold_33 . exon 135392 136338 . - . ID=Physo134640.1;Parent=Physo134640;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . repeat_region 141824 141896 . ? . description=trf scaffold_33 . repeat_region 144860 144871 . ? . description=dust scaffold_33 ensembl protein_coding_gene 139990 141996 . - . ID=Physo134641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330031;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 139990 141996 . - . ID=Physo134641;Parent=Physo134641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 139990 141996 . - 0 ID=Physo134641;Parent=Physo134641;rank=1 scaffold_33 . exon 139990 141996 . - . ID=Physo134641.1;Parent=Physo134641;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 142431 143825 . - . ID=Physo134642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330032;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 142431 143825 . - . ID=Physo134642;Parent=Physo134642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 142431 143825 . - 0 ID=Physo134642;Parent=Physo134642;rank=1 scaffold_33 . exon 142431 143825 . - . ID=Physo134642.1;Parent=Physo134642;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 145663 147702 . + . ID=Physo134643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330033;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 145663 147702 . + . ID=Physo134643;Parent=Physo134643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 145663 146236 . + 0 ID=Physo134643;Parent=Physo134643;rank=1 scaffold_33 . exon 145663 146236 . + . ID=Physo134643.1;Parent=Physo134643;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 146298 147637 . + 0 ID=Physo134643;Parent=Physo134643;rank=2 scaffold_33 . exon 146298 147702 . + . ID=Physo134643.2;Parent=Physo134643;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_33 ensembl protein_coding_gene 148503 150183 . + . ID=Physo134644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330034;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 148503 150183 . + . ID=Physo134644;Parent=Physo134644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 148503 149246 . + 0 ID=Physo134644;Parent=Physo134644;rank=1 scaffold_33 . exon 148503 149246 . + . ID=Physo134644.1;Parent=Physo134644;constitutive=1;rank=1 scaffold_33 . CDS 149449 150183 . + 0 ID=Physo134644;Parent=Physo134644;rank=2 scaffold_33 . biological_region 154161 154163 0.999 + . logic_name=eponine scaffold_33 . biological_region 157410 157414 0.999 + . logic_name=eponine scaffold_33 . biological_region 158210 158219 0.999 - . logic_name=eponine scaffold_33 . exon 149449 150183 . + . ID=Physo134644.2;Parent=Physo134644;constitutive=1;rank=2 scaffold_33 ensembl protein_coding_gene 160577 161863 . - . ID=Physo134645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330035;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 160577 161863 . - . ID=Physo134645;Parent=Physo134645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 160577 161863 . - 0 ID=Physo134645;Parent=Physo134645;rank=1 scaffold_33 . exon 160577 161863 . - . ID=Physo134645.1;Parent=Physo134645;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 162776 163813 . + . ID=Physo134646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330036;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 162776 163813 . + . ID=Physo134646;Parent=Physo134646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 162776 163813 . + 0 ID=Physo134646;Parent=Physo134646;rank=1 scaffold_33 . exon 162776 163813 . + . ID=Physo134646.1;Parent=Physo134646;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 163933 164910 . - . ID=Physo134647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330037;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 163933 164910 . - . ID=Physo134647;Parent=Physo134647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 163933 164620 . - . ID=Physo134647.2;Parent=Physo134647;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_33 . CDS 163964 164620 . - 0 ID=Physo134647;Parent=Physo134647;rank=2 scaffold_33 . CDS 164696 164893 . - 0 ID=Physo134647;Parent=Physo134647;rank=1 scaffold_33 . exon 164696 164910 . - . ID=Physo134647.1;Parent=Physo134647;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 ensembl protein_coding_gene 167706 168068 . - . ID=Physo134648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330038;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 167706 168068 . - . ID=Physo134648;Parent=Physo134648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 167706 168068 . - 0 ID=Physo134648;Parent=Physo134648;rank=1 scaffold_33 . exon 167706 168068 . - . ID=Physo134648.1;Parent=Physo134648;constitutive=1;rank=1 scaffold_33 . biological_region 169296 169299 0.999 + . logic_name=eponine scaffold_33 . biological_region 170652 170658 0.999 + . logic_name=eponine scaffold_33 . biological_region 170672 170674 0.999 - . logic_name=eponine scaffold_33 . biological_region 171227 171230 0.999 - . logic_name=eponine scaffold_33 . biological_region 171908 171911 0.999 - . logic_name=eponine scaffold_33 . biological_region 173145 173147 0.999 + . logic_name=eponine scaffold_33 . biological_region 174165 174170 0.999 - . logic_name=eponine scaffold_33 . biological_region 174880 174881 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 170245 171306 . + . ID=Physo134649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330039;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 170245 171306 . + . ID=Physo134649;Parent=Physo134649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 170245 171306 . + 0 ID=Physo134649;Parent=Physo134649;rank=1 scaffold_33 . exon 170245 171306 . + . ID=Physo134649.1;Parent=Physo134649;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 172019 173282 . + . ID=Physo134650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330040;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 172019 173282 . + . ID=Physo134650;Parent=Physo134650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 172019 172136 . + 0 ID=Physo134650;Parent=Physo134650;rank=1 scaffold_33 . exon 172019 172136 . + . ID=Physo134650.1;Parent=Physo134650;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 172201 173282 . + 0 ID=Physo134650;Parent=Physo134650;rank=2 scaffold_33 . exon 172201 173282 . + . ID=Physo134650.2;Parent=Physo134650;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 ensembl protein_coding_gene 173858 174956 . + . ID=Physo134651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330041;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 173858 174956 . + . ID=Physo134651;Parent=Physo134651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 173858 174569 . + 0 ID=Physo134651;Parent=Physo134651;rank=1 scaffold_33 . exon 173858 174569 . + . ID=Physo134651.1;Parent=Physo134651;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 174643 174956 . + 0 ID=Physo134651;Parent=Physo134651;rank=2 scaffold_33 . exon 174643 174956 . + . ID=Physo134651.2;Parent=Physo134651;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 ensembl protein_coding_gene 175424 176408 . + . ID=Physo134652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330042;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 175424 176408 . + . ID=Physo134652;Parent=Physo134652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 175424 175854 . + 0 ID=Physo134652;Parent=Physo134652;rank=1 scaffold_33 . exon 175424 175854 . + . ID=Physo134652.1;Parent=Physo134652;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 175893 175919 . + 0 ID=Physo134652;Parent=Physo134652;rank=2 scaffold_33 . exon 175893 175919 . + . ID=Physo134652.2;Parent=Physo134652;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 176018 176069 . + 0 ID=Physo134652;Parent=Physo134652;rank=3 scaffold_33 . exon 176018 176069 . + . ID=Physo134652.3;Parent=Physo134652;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 176154 176408 . + 0 ID=Physo134652;Parent=Physo134652;rank=4 scaffold_33 . exon 176154 176408 . + . ID=Physo134652.4;Parent=Physo134652;constitutive=1;rank=4 scaffold_33 ensembl protein_coding_gene 177469 178395 . + . ID=Physo157016;biotype=protein_coding;external_name=C_scaffold_33000005;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 177469 178395 . + . ID=Physo157016;Parent=Physo157016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 177469 177911 . + 0 ID=Physo157016;Parent=Physo157016;rank=1 scaffold_33 . exon 177469 177911 . + . ID=Physo157016.1;Parent=Physo157016;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 177942 178066 . + 0 ID=Physo157016;Parent=Physo157016;rank=2 scaffold_33 . exon 177942 178066 . + . ID=Physo157016.2;Parent=Physo157016;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 178142 178395 . + 0 ID=Physo157016;Parent=Physo157016;rank=3 scaffold_33 . exon 178142 178395 . + . ID=Physo157016.3;Parent=Physo157016;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . repeat_region 181498 181505 . ? . description=dust scaffold_33 . repeat_region 188285 188329 . ? . description=trf scaffold_33 . repeat_region 188291 188332 . ? . description=dust scaffold_33 . repeat_region 188291 188332 . ? . description=trf scaffold_33 ensembl protein_coding_gene 182534 184145 . - . ID=Physo134656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330046;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 182534 184145 . - . ID=Physo134656;Parent=Physo134656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 182534 182847 . - 0 ID=Physo134656;Parent=Physo134656;rank=3 scaffold_33 . exon 182534 182847 . - . ID=Physo134656.3;Parent=Physo134656;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 182918 183860 . - 0 ID=Physo134656;Parent=Physo134656;rank=2 scaffold_33 . exon 182918 183860 . - . ID=Physo134656.2;Parent=Physo134656;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . CDS 183957 184145 . - 0 ID=Physo134656;Parent=Physo134656;rank=1 scaffold_33 . exon 183957 184145 . - . ID=Physo134656.1;Parent=Physo134656;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 185459 186400 . + . ID=Physo134657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330047;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 185459 186400 . + . ID=Physo134657;Parent=Physo134657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 185459 186400 . + 0 ID=Physo134657;Parent=Physo134657;rank=1 scaffold_33 . exon 185459 186400 . + . ID=Physo134657.1;Parent=Physo134657;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 187762 190377 . + . ID=Physo134658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330048;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 187762 190377 . + . ID=Physo134658;Parent=Physo134658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 187762 190377 . + 0 ID=Physo134658;Parent=Physo134658;rank=1 scaffold_33 . exon 187762 190377 . + . ID=Physo134658.1;Parent=Physo134658;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 179431 180860 . + . ID=Physo157017;biotype=protein_coding;external_name=C_scaffold_33000006;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 179431 180860 . + . ID=Physo157017;Parent=Physo157017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 179431 179989 . + 0 ID=Physo157017;Parent=Physo157017;rank=1 scaffold_33 . exon 179431 179989 . + . ID=Physo157017.1;Parent=Physo157017;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 180488 180612 . + 0 ID=Physo157017;Parent=Physo157017;rank=2 scaffold_33 . exon 180488 180612 . + . ID=Physo157017.2;Parent=Physo157017;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 180687 180860 . + 0 ID=Physo157017;Parent=Physo157017;rank=3 scaffold_33 . exon 180687 180860 . + . ID=Physo157017.3;Parent=Physo157017;constitutive=1;rank=3 scaffold_33 . biological_region 189919 189919 0.999 - . logic_name=eponine scaffold_33 . biological_region 193013 193015 0.999 - . logic_name=eponine scaffold_33 . biological_region 194551 194551 0.999 - . logic_name=eponine scaffold_33 . biological_region 196208 196213 0.999 - . logic_name=eponine scaffold_33 . biological_region 196264 196270 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 193667 195265 . + . ID=Physo134659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330049;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 193667 195265 . + . ID=Physo134659;Parent=Physo134659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 193667 195265 . + 0 ID=Physo134659;Parent=Physo134659;rank=1 scaffold_33 . exon 193667 195265 . + . ID=Physo134659.1;Parent=Physo134659;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 196648 198286 . + . ID=Physo134660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330050;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 196648 198286 . + . ID=Physo134660;Parent=Physo134660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 196648 198195 . + 0 ID=Physo134660;Parent=Physo134660;rank=1 scaffold_33 . exon 196648 198286 . + . ID=Physo134660.1;Parent=Physo134660;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_33 . repeat_region 199201 199225 . ? . description=trf scaffold_33 . repeat_region 201773 201831 . ? . description=dust scaffold_33 . repeat_region 202207 202215 . ? . description=dust scaffold_33 . repeat_region 204835 204842 . ? . description=dust scaffold_33 . repeat_region 206502 206534 . ? . description=trf scaffold_33 . repeat_region 208330 208344 . ? . description=dust scaffold_33 ensembl protein_coding_gene 199332 200009 . + . ID=Physo134661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330051;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 199332 200009 . + . ID=Physo134661;Parent=Physo134661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 199332 200009 . + 0 ID=Physo134661;Parent=Physo134661;rank=1 scaffold_33 . exon 199332 200009 . + . ID=Physo134661.1;Parent=Physo134661;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 200945 201700 . + . ID=Physo134662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330052;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 200945 201700 . + . ID=Physo134662;Parent=Physo134662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 200945 201700 . + 0 ID=Physo134662;Parent=Physo134662;rank=1 scaffold_33 . exon 200945 201700 . + . ID=Physo134662.1;Parent=Physo134662;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 204924 206243 . + . ID=Physo134663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330053;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 204924 206243 . + . ID=Physo134663;Parent=Physo134663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 204924 206243 . + . ID=Physo134663.1;Parent=Physo134663;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_33 . CDS 204979 206109 . + 0 ID=Physo134663;Parent=Physo134663;rank=1 scaffold_33 ensembl protein_coding_gene 206924 208027 . + . ID=Physo134664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330054;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 206924 208027 . + . ID=Physo134664;Parent=Physo134664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 206924 208027 . + 0 ID=Physo134664;Parent=Physo134664;rank=1 scaffold_33 . exon 206924 208027 . + . ID=Physo134664.1;Parent=Physo134664;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 208617 209464 . - . ID=Physo134665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330055;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 208617 209464 . - . ID=Physo134665;Parent=Physo134665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 208617 208823 . - 0 ID=Physo134665;Parent=Physo134665;rank=3 scaffold_33 . exon 208617 208823 . - . ID=Physo134665.3;Parent=Physo134665;constitutive=1;rank=3 scaffold_33 . CDS 208906 209078 . - 0 ID=Physo134665;Parent=Physo134665;rank=2 scaffold_33 . exon 208906 209078 . - . ID=Physo134665.2;Parent=Physo134665;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 209143 209464 . - 0 ID=Physo134665;Parent=Physo134665;rank=1 scaffold_33 . biological_region 210111 210113 0.999 + . logic_name=eponine scaffold_33 . biological_region 211463 211465 0.999 + . logic_name=eponine scaffold_33 . biological_region 213674 213678 0.999 + . logic_name=eponine scaffold_33 . biological_region 217961 217965 0.999 + . logic_name=eponine scaffold_33 . exon 209143 209464 . - . ID=Physo134665.1;Parent=Physo134665;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 ensembl protein_coding_gene 211910 212650 . + . ID=Physo134666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330056;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 211910 212650 . + . ID=Physo134666;Parent=Physo134666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 211910 212650 . + 0 ID=Physo134666;Parent=Physo134666;rank=1 scaffold_33 . exon 211910 212650 . + . ID=Physo134666.1;Parent=Physo134666;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 212957 213820 . - . ID=Physo134667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330057;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 212957 213820 . - . ID=Physo134667;Parent=Physo134667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 212957 213820 . - 0 ID=Physo134667;Parent=Physo134667;rank=1 scaffold_33 . exon 212957 213820 . - . ID=Physo134667.1;Parent=Physo134667;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 214021 214743 . + . ID=Physo134668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330058;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 214021 214743 . + . ID=Physo134668;Parent=Physo134668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 214021 214387 . + . ID=Physo134668.1;Parent=Physo134668;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 . CDS 214037 214387 . + 0 ID=Physo134668;Parent=Physo134668;rank=1 scaffold_33 . CDS 214463 214549 . + 0 ID=Physo134668;Parent=Physo134668;rank=2 scaffold_33 . exon 214463 214743 . + . ID=Physo134668.2;Parent=Physo134668;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_33 . repeat_region 220377 220384 . ? . description=dust scaffold_33 . repeat_region 225358 225365 . ? . description=dust scaffold_33 . repeat_region 225588 225625 . ? . description=dust scaffold_33 . repeat_region 226466 226475 . ? . description=dust scaffold_33 . repeat_region 227919 227988 . ? . description=trf scaffold_33 . repeat_region 227938 228013 . ? . description=trf scaffold_33 ensembl protein_coding_gene 226207 228815 . + . ID=Physo134669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330059;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 226207 228815 . + . ID=Physo134669;Parent=Physo134669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 226207 226551 . + 0 ID=Physo134669;Parent=Physo134669;rank=1 scaffold_33 . exon 226207 226551 . + . ID=Physo134669.1;Parent=Physo134669;constitutive=1;rank=1 scaffold_33 . CDS 226618 226822 . + 0 ID=Physo134669;Parent=Physo134669;rank=2 scaffold_33 . exon 226618 226822 . + . ID=Physo134669.2;Parent=Physo134669;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_33 . CDS 227033 227110 . + 0 ID=Physo134669;Parent=Physo134669;rank=3 scaffold_33 . exon 227033 227110 . + . ID=Physo134669.3;Parent=Physo134669;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 227458 228815 . + 0 ID=Physo134669;Parent=Physo134669;rank=4 scaffold_33 . exon 227458 228815 . + . ID=Physo134669.4;Parent=Physo134669;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . biological_region 231929 231935 0.999 + . logic_name=eponine scaffold_33 . biological_region 235541 235541 0.999 + . logic_name=eponine scaffold_33 . biological_region 235617 235622 0.999 - . logic_name=eponine scaffold_33 . biological_region 235711 235716 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 233989 234824 . + . ID=Physo134670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330060;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 233989 234824 . + . ID=Physo134670;Parent=Physo134670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 233989 233996 . + 0 ID=Physo134670;Parent=Physo134670;rank=1 scaffold_33 . exon 233989 233996 . + . ID=Physo134670.1;Parent=Physo134670;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 234455 234824 . + 0 ID=Physo134670;Parent=Physo134670;rank=2 scaffold_33 . exon 234455 234824 . + . ID=Physo134670.2;Parent=Physo134670;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 ensembl protein_coding_gene 235067 235513 . + . ID=Physo134671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330061;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 235067 235513 . + . ID=Physo134671;Parent=Physo134671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 235067 235298 . + 0 ID=Physo134671;Parent=Physo134671;rank=1 scaffold_33 . exon 235067 235298 . + . ID=Physo134671.1;Parent=Physo134671;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 235368 235513 . + 0 ID=Physo134671;Parent=Physo134671;rank=2 scaffold_33 . exon 235368 235513 . + . ID=Physo134671.2;Parent=Physo134671;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 ensembl protein_coding_gene 236080 236565 . + . ID=Physo134672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330062;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 236080 236565 . + . ID=Physo134672;Parent=Physo134672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 236080 236565 . + 0 ID=Physo134672;Parent=Physo134672;rank=1 scaffold_33 . exon 236080 236565 . + . ID=Physo134672.1;Parent=Physo134672;constitutive=1;rank=1 scaffold_33 . repeat_region 239567 239574 . ? . description=dust scaffold_33 . repeat_region 243348 243412 . ? . description=trf scaffold_33 ensembl protein_coding_gene 241679 242494 . - . ID=Physo108799;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_330001;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 241679 242494 . - . ID=Physo108799;Parent=Physo108799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 241679 242494 . - 0 ID=Physo108799;Parent=Physo108799;rank=1 scaffold_33 . exon 241679 242494 . - . ID=Physo108799.1;Parent=Physo108799;constitutive=1;rank=1 scaffold_33 . biological_region 253035 253036 0.999 - . logic_name=eponine scaffold_33 . biological_region 253671 253671 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 252464 253384 . - . ID=Physo134674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330064;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 252464 253384 . - . ID=Physo134674;Parent=Physo134674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 252464 253384 . - 0 ID=Physo134674;Parent=Physo134674;rank=1 scaffold_33 . exon 252464 253384 . - . ID=Physo134674.1;Parent=Physo134674;constitutive=1;rank=1 scaffold_33 . repeat_region 259938 259994 . ? . description=trf scaffold_33 . repeat_region 259957 260007 . ? . description=trf scaffold_33 . repeat_region 262840 262848 . ? . description=dust scaffold_33 . repeat_region 263097 263400 . + . description=GypsyPi-1c_LTR scaffold_33 . repeat_region 263401 268605 . + . description=GypsyPi-1c_I-int scaffold_33 . repeat_region 265238 265403 . ? . description=trf scaffold_33 . repeat_region 265382 265452 . ? . description=trf scaffold_33 . repeat_region 268606 268677 . + . description=GypsyPi-1c_I-int scaffold_33 ensembl protein_coding_gene 263488 268354 . + . ID=Physo134675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330065;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 263488 268354 . + . ID=Physo134675;Parent=Physo134675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 263488 264488 . + 0 ID=Physo134675;Parent=Physo134675;rank=1 scaffold_33 . exon 263488 264488 . + . ID=Physo134675.1;Parent=Physo134675;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 264662 265080 . + 0 ID=Physo134675;Parent=Physo134675;rank=2 scaffold_33 . exon 264662 265080 . + . ID=Physo134675.2;Parent=Physo134675;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 265170 265542 . + 0 ID=Physo134675;Parent=Physo134675;rank=3 scaffold_33 . exon 265170 265542 . + . ID=Physo134675.3;Parent=Physo134675;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_33 . CDS 265586 266114 . + 0 ID=Physo134675;Parent=Physo134675;rank=4 scaffold_33 . exon 265586 266114 . + . ID=Physo134675.4;Parent=Physo134675;constitutive=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 266213 266689 . + 0 ID=Physo134675;Parent=Physo134675;rank=5 scaffold_33 . exon 266213 266689 . + . ID=Physo134675.5;Parent=Physo134675;constitutive=1;rank=5 scaffold_33 . CDS 266959 268299 . + 0 ID=Physo134675;Parent=Physo134675;rank=6 scaffold_33 . exon 266959 268299 . + . ID=Physo134675.6;Parent=Physo134675;constitutive=1;rank=6 scaffold_33 . CDS 268346 268354 . + 0 ID=Physo134675;Parent=Physo134675;rank=7 scaffold_33 . exon 268346 268354 . + . ID=Physo134675.7;Parent=Physo134675;constitutive=1;rank=7 scaffold_33 . biological_region 268794 268797 0.999 + . logic_name=eponine scaffold_33 . biological_region 270208 270212 0.999 + . logic_name=eponine scaffold_33 . biological_region 270768 270771 0.999 - . logic_name=eponine scaffold_33 . repeat_region 277827 278064 . + . description=Polinton-1_PI scaffold_33 ensembl protein_coding_gene 268637 270837 . - . ID=Physo134676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330066;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 268637 270837 . - . ID=Physo134676;Parent=Physo134676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 268637 269650 . - 0 ID=Physo134676;Parent=Physo134676;rank=4 scaffold_33 . exon 268637 269650 . - . ID=Physo134676.4;Parent=Physo134676;constitutive=1;rank=4 scaffold_33 . CDS 269681 269794 . - 0 ID=Physo134676;Parent=Physo134676;rank=3 scaffold_33 . exon 269681 269794 . - . ID=Physo134676.3;Parent=Physo134676;constitutive=1;rank=3 scaffold_33 . CDS 269950 270688 . - 0 ID=Physo134676;Parent=Physo134676;rank=2 scaffold_33 . exon 269950 270688 . - . ID=Physo134676.2;Parent=Physo134676;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 270743 270837 . - 0 ID=Physo134676;Parent=Physo134676;rank=1 scaffold_33 . exon 270743 270837 . - . ID=Physo134676.1;Parent=Physo134676;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . repeat_region 281113 281120 . ? . description=dust scaffold_33 . repeat_region 281701 281708 . ? . description=dust scaffold_33 . repeat_region 282041 282049 . ? . description=dust scaffold_33 . repeat_region 286585 286592 . ? . description=dust scaffold_33 ensembl protein_coding_gene 282187 285145 . + . ID=Physo134677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330067;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 282187 285145 . + . ID=Physo134677;Parent=Physo134677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 282187 282572 . + 0 ID=Physo134677;Parent=Physo134677;rank=1 scaffold_33 . exon 282187 282572 . + . ID=Physo134677.1;Parent=Physo134677;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 282661 282979 . + 0 ID=Physo134677;Parent=Physo134677;rank=2 scaffold_33 . exon 282661 282979 . + . ID=Physo134677.2;Parent=Physo134677;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 283015 283891 . + 0 ID=Physo134677;Parent=Physo134677;rank=3 scaffold_33 . exon 283015 283891 . + . ID=Physo134677.3;Parent=Physo134677;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_33 . CDS 284019 284597 . + 0 ID=Physo134677;Parent=Physo134677;rank=4 scaffold_33 . exon 284019 284597 . + . ID=Physo134677.4;Parent=Physo134677;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 284828 285016 . + 0 ID=Physo134677;Parent=Physo134677;rank=5 scaffold_33 . exon 284828 285016 . + . ID=Physo134677.5;Parent=Physo134677;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_33 . CDS 285090 285145 . + 0 ID=Physo134677;Parent=Physo134677;rank=6 scaffold_33 . exon 285090 285145 . + . ID=Physo134677.6;Parent=Physo134677;constitutive=1;ensembl_phase=1;rank=6 scaffold_33 ensembl protein_coding_gene 286822 287606 . + . ID=Physo134678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330068;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 286822 287606 . + . ID=Physo134678;Parent=Physo134678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 286822 286914 . + 0 ID=Physo134678;Parent=Physo134678;rank=1 scaffold_33 . exon 286822 286914 . + . ID=Physo134678.1;Parent=Physo134678;constitutive=1;rank=1 scaffold_33 . CDS 286953 287210 . + 0 ID=Physo134678;Parent=Physo134678;rank=2 scaffold_33 . exon 286953 287210 . + . ID=Physo134678.2;Parent=Physo134678;constitutive=1;rank=2 scaffold_33 . CDS 287277 287606 . + 0 ID=Physo134678;Parent=Physo134678;rank=3 scaffold_33 . exon 287277 287606 . + . ID=Physo134678.3;Parent=Physo134678;constitutive=1;rank=3 scaffold_33 ensembl protein_coding_gene 288259 290532 . + . ID=Physo134679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330069;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 288259 290532 . + . ID=Physo134679;Parent=Physo134679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 288259 290532 . + 0 ID=Physo134679;Parent=Physo134679;rank=1 scaffold_33 . exon 288259 290532 . + . ID=Physo134679.1;Parent=Physo134679;constitutive=1;rank=1 scaffold_33 . biological_region 291662 291663 0.999 - . logic_name=eponine scaffold_33 . biological_region 292617 292621 0.999 - . logic_name=eponine scaffold_33 . biological_region 292713 292714 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 290985 291758 . - . ID=Physo134680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330070;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 290985 291758 . - . ID=Physo134680;Parent=Physo134680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 290985 291758 . - 0 ID=Physo134680;Parent=Physo134680;rank=1 scaffold_33 . exon 290985 291758 . - . ID=Physo134680.1;Parent=Physo134680;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 292745 294564 . + . ID=Physo157018;biotype=protein_coding;external_name=C_scaffold_33000007;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 292745 294564 . + . ID=Physo157018;Parent=Physo157018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 292745 293246 . + 0 ID=Physo157018;Parent=Physo157018;rank=1 scaffold_33 . exon 292745 293246 . + . ID=Physo157018.1;Parent=Physo157018;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 293268 293507 . + 0 ID=Physo157018;Parent=Physo157018;rank=2 scaffold_33 . exon 293268 293507 . + . ID=Physo157018.2;Parent=Physo157018;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 293595 293894 . + 0 ID=Physo157018;Parent=Physo157018;rank=3 scaffold_33 . exon 293595 293894 . + . ID=Physo157018.3;Parent=Physo157018;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 293967 294409 . + 0 ID=Physo157018;Parent=Physo157018;rank=4 scaffold_33 . exon 293967 294409 . + . ID=Physo157018.4;Parent=Physo157018;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 294541 294564 . + 0 ID=Physo157018;Parent=Physo157018;rank=5 scaffold_33 . exon 294541 294564 . + . ID=Physo157018.5;Parent=Physo157018;constitutive=1;rank=5 scaffold_33 ensembl protein_coding_gene 298464 303109 . + . ID=Physo157019;biotype=protein_coding;external_name=C_scaffold_33000008;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 298464 303109 . + . ID=Physo157019;Parent=Physo157019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 298464 298740 . + . ID=Physo157019.1;Parent=Physo157019;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_33 . CDS 298466 298740 . + 0 ID=Physo157019;Parent=Physo157019;rank=1 scaffold_33 . CDS 299155 299315 . + 0 ID=Physo157019;Parent=Physo157019;rank=2 scaffold_33 . CDS 299370 299584 . + 0 ID=Physo157019;Parent=Physo157019;rank=3 scaffold_33 . CDS 299651 300176 . + 0 ID=Physo157019;Parent=Physo157019;rank=4 scaffold_33 . CDS 300288 300485 . + 0 ID=Physo157019;Parent=Physo157019;rank=5 scaffold_33 . CDS 300660 300880 . + 0 ID=Physo157019;Parent=Physo157019;rank=6 scaffold_33 . CDS 300914 301177 . + 0 ID=Physo157019;Parent=Physo157019;rank=7 scaffold_33 . CDS 301238 301844 . + 0 ID=Physo157019;Parent=Physo157019;rank=8 scaffold_33 . CDS 301890 302141 . + 0 ID=Physo157019;Parent=Physo157019;rank=9 scaffold_33 . CDS 302205 303109 . + 0 ID=Physo157019;Parent=Physo157019;rank=10 scaffold_33 . repeat_region 306399 306411 . ? . description=dust scaffold_33 ensembl protein_coding_gene 304180 306063 . - . ID=Physo134683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330073;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 304180 306063 . - . ID=Physo134683;Parent=Physo134683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 304180 306063 . - 0 ID=Physo134683;Parent=Physo134683;rank=1 scaffold_33 . exon 304180 306063 . - . ID=Physo134683.1;Parent=Physo134683;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 308351 310055 . + . ID=Physo134684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330074;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 308351 310055 . + . ID=Physo134684;Parent=Physo134684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 308351 310055 . + . ID=Physo134684.1;Parent=Physo134684;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 . CDS 308592 310055 . + 0 ID=Physo134684;Parent=Physo134684;rank=1 scaffold_33 . exon 299155 299315 . + . ID=Physo157019.2;Parent=Physo157019;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_33 . exon 299370 299584 . + . ID=Physo157019.3;Parent=Physo157019;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . exon 299651 300176 . + . ID=Physo157019.4;Parent=Physo157019;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_33 . exon 300288 300485 . + . ID=Physo157019.5;Parent=Physo157019;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_33 . exon 300660 300880 . + . ID=Physo157019.6;Parent=Physo157019;constitutive=1;ensembl_phase=1;rank=6 scaffold_33 . exon 300914 301177 . + . ID=Physo157019.7;Parent=Physo157019;constitutive=1;rank=7 scaffold_33 . exon 301238 301844 . + . ID=Physo157019.8;Parent=Physo157019;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_33 . exon 301890 302141 . + . ID=Physo157019.9;Parent=Physo157019;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_33 . exon 302205 303109 . + . ID=Physo157019.10;Parent=Physo157019;constitutive=1;ensembl_phase=1;rank=10 scaffold_33 . biological_region 309125 309126 0.999 - . logic_name=eponine scaffold_33 . biological_region 309778 309782 0.999 - . logic_name=eponine scaffold_33 . biological_region 309868 309871 0.999 - . logic_name=eponine scaffold_33 . biological_region 311715 311716 0.999 + . logic_name=eponine scaffold_33 . biological_region 313050 313053 0.999 - . logic_name=eponine scaffold_33 . biological_region 313427 313434 0.999 + . logic_name=eponine scaffold_33 . biological_region 313547 313549 0.999 - . logic_name=eponine scaffold_33 . biological_region 315771 315773 0.999 - . logic_name=eponine scaffold_33 . biological_region 315865 315867 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 312869 314533 . + . ID=Physo134685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330075;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 312869 314533 . + . ID=Physo134685;Parent=Physo134685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 312869 314533 . + 0 ID=Physo134685;Parent=Physo134685;rank=1 scaffold_33 . exon 312869 314533 . + . ID=Physo134685.1;Parent=Physo134685;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 315139 316785 . + . ID=Physo134686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330076;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 315139 316785 . + . ID=Physo134686;Parent=Physo134686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 315139 316785 . + 0 ID=Physo134686;Parent=Physo134686;rank=1 scaffold_33 . exon 315139 316785 . + . ID=Physo134686.1;Parent=Physo134686;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 317774 319465 . + . ID=Physo134687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330077;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 317774 319465 . + . ID=Physo134687;Parent=Physo134687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 317774 319465 . + 0 ID=Physo134687;Parent=Physo134687;rank=1 scaffold_33 . exon 317774 319465 . + . ID=Physo134687.1;Parent=Physo134687;constitutive=1;rank=1 scaffold_33 . repeat_region 322073 322122 . ? . description=trf scaffold_33 . repeat_region 323103 323132 . ? . description=trf scaffold_33 . repeat_region 327185 327238 . ? . description=trf scaffold_33 ensembl protein_coding_gene 323091 324758 . + . ID=Physo134690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330080;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 323091 324758 . + . ID=Physo134690;Parent=Physo134690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 323091 324758 . + 0 ID=Physo134690;Parent=Physo134690;rank=1 scaffold_33 . exon 323091 324758 . + . ID=Physo134690.1;Parent=Physo134690;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 324862 326508 . - . ID=Physo134691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330081;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 324862 326508 . - . ID=Physo134691;Parent=Physo134691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 324862 326508 . - 0 ID=Physo134691;Parent=Physo134691;rank=1 scaffold_33 . exon 324862 326508 . - . ID=Physo134691.1;Parent=Physo134691;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 327475 327864 . + . ID=Physo134692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330082;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 327475 327864 . + . ID=Physo134692;Parent=Physo134692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 327475 327864 . + 0 ID=Physo134692;Parent=Physo134692;rank=1 scaffold_33 . exon 327475 327864 . + . ID=Physo134692.1;Parent=Physo134692;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 320741 322575 . - . ID=Physo157020;biotype=protein_coding;external_name=C_scaffold_33000009;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 320741 322575 . - . ID=Physo157020;Parent=Physo157020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 320741 321049 . - 0 ID=Physo157020;Parent=Physo157020;rank=3 scaffold_33 . exon 320741 321049 . - . ID=Physo157020.3;Parent=Physo157020;constitutive=1;rank=3 scaffold_33 . CDS 321107 321476 . - 0 ID=Physo157020;Parent=Physo157020;rank=2 scaffold_33 . exon 321107 321476 . - . ID=Physo157020.2;Parent=Physo157020;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 321833 322575 . - 0 ID=Physo157020;Parent=Physo157020;rank=1 scaffold_33 . exon 321833 322575 . - . ID=Physo157020.1;Parent=Physo157020;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . biological_region 330168 330169 0.999 + . logic_name=eponine scaffold_33 . biological_region 330771 330778 0.999 + . logic_name=eponine scaffold_33 . biological_region 332660 332663 0.999 + . logic_name=eponine scaffold_33 . biological_region 332736 332738 0.999 - . logic_name=eponine scaffold_33 . biological_region 333374 333378 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 330640 334969 . + . ID=Physo134693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330083;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 330640 334969 . + . ID=Physo134693;Parent=Physo134693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 330640 330665 . + 0 ID=Physo134693;Parent=Physo134693;rank=1 scaffold_33 . exon 330640 330665 . + . ID=Physo134693.1;Parent=Physo134693;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 330686 331084 . + 0 ID=Physo134693;Parent=Physo134693;rank=2 scaffold_33 . exon 330686 331084 . + . ID=Physo134693.2;Parent=Physo134693;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 331243 332502 . + 0 ID=Physo134693;Parent=Physo134693;rank=3 scaffold_33 . exon 331243 332502 . + . ID=Physo134693.3;Parent=Physo134693;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_33 . CDS 332604 332830 . + 0 ID=Physo134693;Parent=Physo134693;rank=4 scaffold_33 . exon 332604 332830 . + . ID=Physo134693.4;Parent=Physo134693;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 332981 333590 . + 0 ID=Physo134693;Parent=Physo134693;rank=5 scaffold_33 . exon 332981 333590 . + . ID=Physo134693.5;Parent=Physo134693;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_33 . CDS 333706 334969 . + 0 ID=Physo134693;Parent=Physo134693;rank=6 scaffold_33 . exon 333706 334969 . + . ID=Physo134693.6;Parent=Physo134693;constitutive=1;ensembl_phase=2;rank=6 scaffold_33 ensembl protein_coding_gene 338895 340647 . + . ID=Physo134694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330084;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 338895 340647 . + . ID=Physo134694;Parent=Physo134694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 338895 339339 . + 0 ID=Physo134694;Parent=Physo134694;rank=1 scaffold_33 . exon 338895 339339 . + . ID=Physo134694.1;Parent=Physo134694;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 339386 339569 . + 0 ID=Physo134694;Parent=Physo134694;rank=2 scaffold_33 . exon 339386 339569 . + . ID=Physo134694.2;Parent=Physo134694;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_33 . CDS 339743 340056 . + 0 ID=Physo134694;Parent=Physo134694;rank=3 scaffold_33 . exon 339743 340056 . + . ID=Physo134694.3;Parent=Physo134694;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 340158 340202 . + 0 ID=Physo134694;Parent=Physo134694;rank=4 scaffold_33 . exon 340158 340202 . + . ID=Physo134694.4;Parent=Physo134694;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 340301 340504 . + 0 ID=Physo134694;Parent=Physo134694;rank=5 scaffold_33 . exon 340301 340504 . + . ID=Physo134694.5;Parent=Physo134694;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_33 . CDS 340619 340647 . + 0 ID=Physo134694;Parent=Physo134694;rank=6 scaffold_33 . exon 340619 340647 . + . ID=Physo134694.6;Parent=Physo134694;constitutive=1;ensembl_phase=1;rank=6 scaffold_33 . biological_region 352836 352839 0.999 - . logic_name=eponine scaffold_33 . biological_region 352859 352863 0.999 - . logic_name=eponine scaffold_33 . biological_region 352947 352948 0.999 + . logic_name=eponine scaffold_33 . biological_region 353151 353152 0.999 - . logic_name=eponine scaffold_33 . biological_region 353170 353175 0.999 - . logic_name=eponine scaffold_33 . biological_region 353449 353452 0.999 + . logic_name=eponine scaffold_33 . biological_region 353549 353554 0.999 - . logic_name=eponine scaffold_33 . biological_region 353564 353567 0.999 - . logic_name=eponine scaffold_33 . repeat_region 354282 354343 . ? . description=dust scaffold_33 . repeat_region 354283 354326 . ? . description=trf scaffold_33 . repeat_region 354283 354349 . ? . description=trf scaffold_33 . repeat_region 354522 354564 . ? . description=dust scaffold_33 . repeat_region 354522 354568 . ? . description=trf scaffold_33 . repeat_region 354522 354568 . ? . description=trf scaffold_33 . repeat_region 354634 354657 . ? . description=trf scaffold_33 . repeat_region 354855 354911 . ? . description=trf scaffold_33 . repeat_region 354856 354909 . ? . description=dust scaffold_33 . repeat_region 354863 354909 . ? . description=trf scaffold_33 ensembl protein_coding_gene 348842 349192 . + . ID=Physo134695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330085;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 348842 349192 . + . ID=Physo134695;Parent=Physo134695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 348842 349192 . + 0 ID=Physo134695;Parent=Physo134695;rank=1 scaffold_33 . exon 348842 349192 . + . ID=Physo134695.1;Parent=Physo134695;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 350478 353235 . - . ID=Physo134696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330086;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 350478 353235 . - . ID=Physo134696;Parent=Physo134696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 350478 351331 . - 0 ID=Physo134696;Parent=Physo134696;rank=3 scaffold_33 . exon 350478 351331 . - . ID=Physo134696.3;Parent=Physo134696;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 351425 351507 . - 0 ID=Physo134696;Parent=Physo134696;rank=2 scaffold_33 . exon 351425 351507 . - . ID=Physo134696.2;Parent=Physo134696;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 351584 353235 . - 0 ID=Physo134696;Parent=Physo134696;rank=1 scaffold_33 . exon 351584 353235 . - . ID=Physo134696.1;Parent=Physo134696;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 353425 355434 . + . ID=Physo134697;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330087;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 353425 355434 . + . ID=Physo134697;Parent=Physo134697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 353425 353569 . + 0 ID=Physo134697;Parent=Physo134697;rank=1 scaffold_33 . exon 353425 353569 . + . ID=Physo134697.1;Parent=Physo134697;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 353675 355434 . + 0 ID=Physo134697;Parent=Physo134697;rank=2 scaffold_33 . exon 353675 355434 . + . ID=Physo134697.2;Parent=Physo134697;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . repeat_region 361722 361764 . - . description=Sola3-2_PS scaffold_33 ensembl protein_coding_gene 359888 360550 . + . ID=Physo134698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330088;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 359888 360550 . + . ID=Physo134698;Parent=Physo134698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 359888 360062 . + 0 ID=Physo134698;Parent=Physo134698;rank=1 scaffold_33 . exon 359888 360062 . + . ID=Physo134698.1;Parent=Physo134698;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 360128 360498 . + 0 ID=Physo134698;Parent=Physo134698;rank=2 scaffold_33 . exon 360128 360498 . + . ID=Physo134698.2;Parent=Physo134698;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 360545 360550 . + 0 ID=Physo134698;Parent=Physo134698;rank=3 scaffold_33 . exon 360545 360550 . + . ID=Physo134698.3;Parent=Physo134698;constitutive=1;rank=3 scaffold_33 ensembl protein_coding_gene 366418 367479 . + . ID=Physo134699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330089;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 366418 367479 . + . ID=Physo134699;Parent=Physo134699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 366418 366704 . + 0 ID=Physo134699;Parent=Physo134699;rank=1 scaffold_33 . exon 366418 366704 . + . ID=Physo134699.1;Parent=Physo134699;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 366817 367008 . + 0 ID=Physo134699;Parent=Physo134699;rank=2 scaffold_33 . exon 366817 367008 . + . ID=Physo134699.2;Parent=Physo134699;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 367089 367226 . + 0 ID=Physo134699;Parent=Physo134699;rank=3 scaffold_33 . exon 367089 367226 . + . ID=Physo134699.3;Parent=Physo134699;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_33 . CDS 367299 367479 . + 0 ID=Physo134699;Parent=Physo134699;rank=4 scaffold_33 . exon 367299 367479 . + . ID=Physo134699.4;Parent=Physo134699;constitutive=1;ensembl_phase=2;rank=4 scaffold_33 . repeat_region 371336 371343 . ? . description=dust scaffold_33 . biological_region 374852 374854 0.999 - . logic_name=eponine scaffold_33 . biological_region 375391 375394 0.999 - . logic_name=eponine scaffold_33 . biological_region 377335 377336 0.999 - . logic_name=eponine scaffold_33 . biological_region 377359 377359 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 369501 370505 . - . ID=Physo134700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330090;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 369501 370505 . - . ID=Physo134700;Parent=Physo134700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 369501 370505 . - 0 ID=Physo134700;Parent=Physo134700;rank=1 scaffold_33 . exon 369501 370505 . - . ID=Physo134700.1;Parent=Physo134700;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 371189 372837 . + . ID=Physo134701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330091;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 371189 372837 . + . ID=Physo134701;Parent=Physo134701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 371189 371322 . + 0 ID=Physo134701;Parent=Physo134701;rank=1 scaffold_33 . exon 371189 371322 . + . ID=Physo134701.1;Parent=Physo134701;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 371399 371522 . + 0 ID=Physo134701;Parent=Physo134701;rank=2 scaffold_33 . exon 371399 371522 . + . ID=Physo134701.2;Parent=Physo134701;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 371577 371696 . + 0 ID=Physo134701;Parent=Physo134701;rank=3 scaffold_33 . exon 371577 371696 . + . ID=Physo134701.3;Parent=Physo134701;constitutive=1;rank=3 scaffold_33 . CDS 371765 371845 . + 0 ID=Physo134701;Parent=Physo134701;rank=4 scaffold_33 . exon 371765 371845 . + . ID=Physo134701.4;Parent=Physo134701;constitutive=1;rank=4 scaffold_33 . CDS 371922 371990 . + 0 ID=Physo134701;Parent=Physo134701;rank=5 scaffold_33 . exon 371922 371990 . + . ID=Physo134701.5;Parent=Physo134701;constitutive=1;rank=5 scaffold_33 . CDS 372057 372749 . + 0 ID=Physo134701;Parent=Physo134701;rank=6 scaffold_33 . exon 372057 372837 . + . ID=Physo134701.6;Parent=Physo134701;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_33 ensembl protein_coding_gene 374394 376706 . + . ID=Physo134702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330092;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 374394 376706 . + . ID=Physo134702;Parent=Physo134702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 374394 376706 . + . ID=Physo134702.1;Parent=Physo134702;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 . CDS 375804 376706 . + 0 ID=Physo134702;Parent=Physo134702;rank=1 scaffold_33 ensembl protein_coding_gene 379747 384754 . + . ID=Physo134704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330094;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 379747 384754 . + . ID=Physo134704;Parent=Physo134704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 379747 381988 . + . ID=Physo134704.1;Parent=Physo134704;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 . CDS 379784 381988 . + 0 ID=Physo134704;Parent=Physo134704;rank=1 scaffold_33 . CDS 382121 384754 . + 0 ID=Physo134704;Parent=Physo134704;rank=2 scaffold_33 . exon 382121 384754 . + . ID=Physo134704.2;Parent=Physo134704;constitutive=1;rank=2 scaffold_33 ensembl protein_coding_gene 384884 386302 . + . ID=Physo134705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330095;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 384884 386302 . + . ID=Physo134705;Parent=Physo134705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 384884 385835 . + 0 ID=Physo134705;Parent=Physo134705;rank=1 scaffold_33 . exon 384884 385835 . + . ID=Physo134705.1;Parent=Physo134705;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 385909 385968 . + 0 ID=Physo134705;Parent=Physo134705;rank=2 scaffold_33 . exon 385909 385968 . + . ID=Physo134705.2;Parent=Physo134705;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 386031 386302 . + 0 ID=Physo134705;Parent=Physo134705;rank=3 scaffold_33 . exon 386031 386302 . + . ID=Physo134705.3;Parent=Physo134705;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 ensembl protein_coding_gene 386934 387374 . - . ID=Physo134706;biotype=protein_coding;description=PsAvh40 [Source:UniProtKB/TrEMBL%3BAcc:E0W508];external_name=estExt_fgenesh1_pg.C_330096;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 386934 387374 . - . ID=Physo134706;Parent=Physo134706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 386934 387374 . - 0 ID=Physo134706;Parent=Physo134706;rank=1 scaffold_33 . exon 386934 387374 . - . ID=Physo134706.1;Parent=Physo134706;constitutive=1;rank=1 scaffold_33 . repeat_region 388171 388180 . ? . description=dust scaffold_33 . repeat_region 391092 391141 . ? . description=dust scaffold_33 . repeat_region 391420 391440 . ? . description=dust scaffold_33 . biological_region 391751 391754 0.999 + . logic_name=eponine scaffold_33 . biological_region 391813 391814 0.999 - . logic_name=eponine scaffold_33 . biological_region 392715 392715 0.999 - . logic_name=eponine scaffold_33 . biological_region 396575 396579 0.999 + . logic_name=eponine scaffold_33 . repeat_region 397777 397786 . ? . description=dust scaffold_33 ensembl protein_coding_gene 392469 394534 . + . ID=Physo134707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330097;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 392469 394534 . + . ID=Physo134707;Parent=Physo134707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 392469 394322 . + 0 ID=Physo134707;Parent=Physo134707;rank=1 scaffold_33 . exon 392469 394534 . + . ID=Physo134707.1;Parent=Physo134707;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_33 ensembl pseudogene 395367 397366 . - . ID=Physo134708;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_330098;logic_name=jgi_physo1_1 scaffold_33 ensembl pseudogene 395367 397366 . - . ID=Physo134708;Parent=Physo134708;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_33 . exon 395367 395450 . - . ID=Physo134708.2;Parent=Physo134708;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_33 . exon 395474 397366 . - . ID=Physo134708.1;Parent=Physo134708;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 ensembl protein_coding_gene 401429 403699 . + . ID=Physo134709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330099;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 401429 403699 . + . ID=Physo134709;Parent=Physo134709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 401429 403699 . + 0 ID=Physo134709;Parent=Physo134709;rank=1 scaffold_33 . exon 401429 403699 . + . ID=Physo134709.1;Parent=Physo134709;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 404261 406326 . - . ID=Physo134710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330100;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 404261 406326 . - . ID=Physo134710;Parent=Physo134710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 404261 406326 . - . ID=Physo134710.1;Parent=Physo134710;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_33 . CDS 404473 406326 . - 0 ID=Physo134710;Parent=Physo134710;rank=1 scaffold_33 . biological_region 408856 408857 0.999 - . logic_name=eponine scaffold_33 . repeat_region 409085 409093 . ? . description=dust scaffold_33 . repeat_region 410551 410564 . ? . description=dust scaffold_33 . repeat_region 411014 411034 . ? . description=trf scaffold_33 . repeat_region 414918 414927 . ? . description=dust scaffold_33 . repeat_region 415080 416865 . ? . description=dust scaffold_33 . biological_region 417063 417069 0.999 + . logic_name=eponine scaffold_33 . biological_region 417114 417115 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 411666 412118 . + . ID=Physo134711;biotype=protein_coding;description=PsAvh39 [Source:UniProtKB/TrEMBL%3BAcc:E0W509];external_name=estExt_fgenesh1_pg.C_330101;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 411666 412118 . + . ID=Physo134711;Parent=Physo134711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 411666 412118 . + 0 ID=Physo134711;Parent=Physo134711;rank=1 scaffold_33 . exon 411666 412118 . + . ID=Physo134711.1;Parent=Physo134711;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 417367 422106 . - . ID=Physo134712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330102;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 417367 422106 . - . ID=Physo134712;Parent=Physo134712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 417367 420000 . - 0 ID=Physo134712;Parent=Physo134712;rank=3 scaffold_33 . exon 417367 420000 . - . ID=Physo134712.3;Parent=Physo134712;constitutive=1;rank=3 scaffold_33 . CDS 420133 421869 . - 0 ID=Physo134712;Parent=Physo134712;rank=2 scaffold_33 . CDS 421933 422106 . - 0 ID=Physo134712;Parent=Physo134712;rank=1 scaffold_33 . exon 420133 421869 . - . ID=Physo134712.2;Parent=Physo134712;constitutive=1;rank=2 scaffold_33 . exon 421933 422106 . - . ID=Physo134712.1;Parent=Physo134712;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 422537 424842 . - . ID=Physo134713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330103;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 422537 424842 . - . ID=Physo134713;Parent=Physo134713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 422537 423199 . - 0 ID=Physo134713;Parent=Physo134713;rank=2 scaffold_33 . exon 422537 423199 . - . ID=Physo134713.2;Parent=Physo134713;constitutive=1;rank=2 scaffold_33 . CDS 423250 424809 . - 0 ID=Physo134713;Parent=Physo134713;rank=1 scaffold_33 . exon 423250 424842 . - . ID=Physo134713.1;Parent=Physo134713;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 ensembl protein_coding_gene 425183 427495 . - . ID=Physo134714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330104;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 425183 427495 . - . ID=Physo134714;Parent=Physo134714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 425183 427495 . - 0 ID=Physo134714;Parent=Physo134714;rank=1 scaffold_33 . exon 425183 427495 . - . ID=Physo134714.1;Parent=Physo134714;constitutive=1;rank=1 scaffold_33 . repeat_region 431328 431335 . ? . description=dust scaffold_33 . repeat_region 432006 432048 . ? . description=trf scaffold_33 . repeat_region 432418 432425 . ? . description=dust scaffold_33 . repeat_region 432621 432657 . ? . description=trf scaffold_33 . biological_region 435924 435928 0.999 + . logic_name=eponine scaffold_33 . biological_region 435971 435978 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 433174 435369 . + . ID=Physo134716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330106;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 433174 435369 . + . ID=Physo134716;Parent=Physo134716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 433174 435369 . + 0 ID=Physo134716;Parent=Physo134716;rank=1 scaffold_33 . exon 433174 435369 . + . ID=Physo134716.1;Parent=Physo134716;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 435861 437372 . + . ID=Physo134717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330107;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 435861 437372 . + . ID=Physo134717;Parent=Physo134717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 435861 437372 . + 0 ID=Physo134717;Parent=Physo134717;rank=1 scaffold_33 . exon 435861 437372 . + . ID=Physo134717.1;Parent=Physo134717;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 438663 439112 . + . ID=Physo157022;biotype=protein_coding;external_name=C_scaffold_33000011;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 438663 439112 . + . ID=Physo157022;Parent=Physo157022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 438663 438790 . + 0 ID=Physo157022;Parent=Physo157022;rank=1 scaffold_33 . exon 438663 438790 . + . ID=Physo157022.1;Parent=Physo157022;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 438863 439112 . + 0 ID=Physo157022;Parent=Physo157022;rank=2 scaffold_33 . exon 438863 439112 . + . ID=Physo157022.2;Parent=Physo157022;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 ensembl protein_coding_gene 440011 441843 . + . ID=Physo157023;biotype=protein_coding;external_name=C_scaffold_33000012;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 440011 441843 . + . ID=Physo157023;Parent=Physo157023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 440011 441253 . + 0 ID=Physo157023;Parent=Physo157023;rank=1 scaffold_33 . exon 440011 441253 . + . ID=Physo157023.1;Parent=Physo157023;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 441305 441514 . + 0 ID=Physo157023;Parent=Physo157023;rank=2 scaffold_33 . exon 441305 441514 . + . ID=Physo157023.2;Parent=Physo157023;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 441665 441843 . + 0 ID=Physo157023;Parent=Physo157023;rank=3 scaffold_33 . exon 441665 441843 . + . ID=Physo157023.3;Parent=Physo157023;constitutive=1;ensembl_phase=1;rank=3 scaffold_33 ensembl protein_coding_gene 442168 448223 . - . ID=Physo157024;biotype=protein_coding;external_name=C_scaffold_33000013;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 442168 448223 . - . ID=Physo157024;Parent=Physo157024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 442168 442188 . - 0 ID=Physo157024;Parent=Physo157024;rank=10 scaffold_33 . exon 442168 442188 . - . ID=Physo157024.10;Parent=Physo157024;constitutive=1;rank=10 scaffold_33 . CDS 442280 442713 . - 0 ID=Physo157024;Parent=Physo157024;rank=9 scaffold_33 . exon 442280 442713 . - . ID=Physo157024.9;Parent=Physo157024;constitutive=1;ensembl_phase=1;rank=9 scaffold_33 . CDS 442735 443146 . - 0 ID=Physo157024;Parent=Physo157024;rank=8 scaffold_33 . exon 442735 443146 . - . ID=Physo157024.8;Parent=Physo157024;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_33 . CDS 443323 444238 . - 0 ID=Physo157024;Parent=Physo157024;rank=7 scaffold_33 . exon 443323 444238 . - . ID=Physo157024.7;Parent=Physo157024;constitutive=1;ensembl_phase=2;rank=7 scaffold_33 . CDS 444263 444496 . - 0 ID=Physo157024;Parent=Physo157024;rank=6 scaffold_33 . exon 444263 444496 . - . ID=Physo157024.6;Parent=Physo157024;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_33 . CDS 444542 445419 . - 0 ID=Physo157024;Parent=Physo157024;rank=5 scaffold_33 . exon 444542 445419 . - . ID=Physo157024.5;Parent=Physo157024;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_33 . CDS 445819 445933 . - 0 ID=Physo157024;Parent=Physo157024;rank=4 scaffold_33 . exon 445819 445933 . - . ID=Physo157024.4;Parent=Physo157024;constitutive=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 445964 447066 . - 0 ID=Physo157024;Parent=Physo157024;rank=3 scaffold_33 . exon 445964 447066 . - . ID=Physo157024.3;Parent=Physo157024;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_33 . CDS 447088 447940 . - 0 ID=Physo157024;Parent=Physo157024;rank=2 scaffold_33 . exon 447088 447940 . - . ID=Physo157024.2;Parent=Physo157024;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 448204 448223 . - 0 ID=Physo157024;Parent=Physo157024;rank=1 scaffold_33 . biological_region 448972 448972 0.999 + . logic_name=eponine scaffold_33 . biological_region 449040 449043 0.999 + . logic_name=eponine scaffold_33 . biological_region 449074 449079 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 449723 452047 . + . ID=Physo134720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330110;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 449723 452047 . + . ID=Physo134720;Parent=Physo134720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 449723 452047 . + 0 ID=Physo134720;Parent=Physo134720;rank=1 scaffold_33 . exon 449723 452047 . + . ID=Physo134720.1;Parent=Physo134720;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 452115 454351 . - . ID=Physo134721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330111;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 452115 454351 . - . ID=Physo134721;Parent=Physo134721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 452115 453208 . - 0 ID=Physo134721;Parent=Physo134721;rank=2 scaffold_33 . exon 452115 453208 . - . ID=Physo134721.2;Parent=Physo134721;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 453256 454351 . - 0 ID=Physo134721;Parent=Physo134721;rank=1 scaffold_33 . exon 453256 454351 . - . ID=Physo134721.1;Parent=Physo134721;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 ensembl protein_coding_gene 455057 457119 . - . ID=Physo134722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330112;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 455057 457119 . - . ID=Physo134722;Parent=Physo134722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 455057 456657 . - 0 ID=Physo134722;Parent=Physo134722;rank=2 scaffold_33 . exon 455057 456657 . - . ID=Physo134722.2;Parent=Physo134722;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 456678 457119 . - 0 ID=Physo134722;Parent=Physo134722;rank=1 scaffold_33 . exon 456678 457119 . - . ID=Physo134722.1;Parent=Physo134722;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . exon 448204 448223 . - . ID=Physo157024.1;Parent=Physo157024;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . repeat_region 460980 461011 . ? . description=trf scaffold_33 . repeat_region 465306 465336 . ? . description=trf scaffold_33 ensembl protein_coding_gene 466670 466873 . - . ID=Physo116324;biotype=protein_coding;external_name=estExt_Genewise1.C_330006;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 466670 466873 . - . ID=Physo116324;Parent=Physo116324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 466670 466837 . - 0 ID=Physo116324;Parent=Physo116324;rank=1 scaffold_33 . exon 466670 466873 . - . ID=Physo116324.1;Parent=Physo116324;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 ensembl protein_coding_gene 457898 460093 . - . ID=Physo134723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330113;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 457898 460093 . - . ID=Physo134723;Parent=Physo134723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 457898 458760 . - 0 ID=Physo134723;Parent=Physo134723;rank=2 scaffold_33 . exon 457898 458760 . - . ID=Physo134723.2;Parent=Physo134723;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 458878 460093 . - 0 ID=Physo134723;Parent=Physo134723;rank=1 scaffold_33 . exon 458878 460093 . - . ID=Physo134723.1;Parent=Physo134723;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 ensembl protein_coding_gene 461412 463492 . + . ID=Physo134724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330114;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 461412 463492 . + . ID=Physo134724;Parent=Physo134724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 461412 461731 . + 0 ID=Physo134724;Parent=Physo134724;rank=1 scaffold_33 . exon 461412 461731 . + . ID=Physo134724.1;Parent=Physo134724;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 461781 462806 . + 0 ID=Physo134724;Parent=Physo134724;rank=2 scaffold_33 . exon 461781 462806 . + . ID=Physo134724.2;Parent=Physo134724;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 462847 463492 . + 0 ID=Physo134724;Parent=Physo134724;rank=3 scaffold_33 . exon 462847 463492 . + . ID=Physo134724.3;Parent=Physo134724;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . repeat_region 471788 471797 . ? . description=dust scaffold_33 . biological_region 472146 472148 0.999 - . logic_name=eponine scaffold_33 . biological_region 472216 472221 0.999 - . logic_name=eponine scaffold_33 . biological_region 472354 472355 0.999 - . logic_name=eponine scaffold_33 . biological_region 472501 472503 0.999 + . logic_name=eponine scaffold_33 . biological_region 472564 472568 0.999 - . logic_name=eponine scaffold_33 . biological_region 474114 474120 0.999 - . logic_name=eponine scaffold_33 . repeat_region 475403 475418 . ? . description=dust scaffold_33 . biological_region 475928 475929 0.999 + . logic_name=eponine scaffold_33 . biological_region 476033 476034 0.999 - . logic_name=eponine scaffold_33 . biological_region 476535 476538 0.999 + . logic_name=eponine scaffold_33 . repeat_region 476822 476829 . ? . description=dust scaffold_33 . biological_region 477178 477178 0.999 - . logic_name=eponine scaffold_33 . biological_region 477474 477477 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 467920 470348 . - . ID=Physo134725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330115;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 467920 470348 . - . ID=Physo134725;Parent=Physo134725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 467920 468101 . - 0 ID=Physo134725;Parent=Physo134725;rank=8 scaffold_33 . exon 467920 468101 . - . ID=Physo134725.8;Parent=Physo134725;constitutive=1;ensembl_phase=1;rank=8 scaffold_33 . CDS 468192 468593 . - 0 ID=Physo134725;Parent=Physo134725;rank=7 scaffold_33 . exon 468192 468593 . - . ID=Physo134725.7;Parent=Physo134725;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_33 . CDS 468631 468777 . - 0 ID=Physo134725;Parent=Physo134725;rank=6 scaffold_33 . exon 468631 468777 . - . ID=Physo134725.6;Parent=Physo134725;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_33 . CDS 468898 469118 . - 0 ID=Physo134725;Parent=Physo134725;rank=5 scaffold_33 . exon 468898 469118 . - . ID=Physo134725.5;Parent=Physo134725;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_33 . CDS 469176 469240 . - 0 ID=Physo134725;Parent=Physo134725;rank=4 scaffold_33 . exon 469176 469240 . - . ID=Physo134725.4;Parent=Physo134725;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_33 . CDS 469261 469392 . - 0 ID=Physo134725;Parent=Physo134725;rank=3 scaffold_33 . exon 469261 469392 . - . ID=Physo134725.3;Parent=Physo134725;constitutive=1;rank=3 scaffold_33 . CDS 469442 469909 . - 0 ID=Physo134725;Parent=Physo134725;rank=2 scaffold_33 . exon 469442 469909 . - . ID=Physo134725.2;Parent=Physo134725;constitutive=1;rank=2 scaffold_33 . CDS 470346 470348 . - 0 ID=Physo134725;Parent=Physo134725;rank=1 scaffold_33 . exon 470346 470348 . - . ID=Physo134725.1;Parent=Physo134725;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 471966 474146 . + . ID=Physo134726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330116;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 471966 474146 . + . ID=Physo134726;Parent=Physo134726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 471966 474146 . + 0 ID=Physo134726;Parent=Physo134726;rank=1 scaffold_33 . exon 471966 474146 . + . ID=Physo134726.1;Parent=Physo134726;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 475898 476722 . + . ID=Physo134727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330117;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 475898 476722 . + . ID=Physo134727;Parent=Physo134727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 475898 476722 . + 0 ID=Physo134727;Parent=Physo134727;rank=1 scaffold_33 . exon 475898 476722 . + . ID=Physo134727.1;Parent=Physo134727;constitutive=1;rank=1 scaffold_33 . repeat_region 479058 479107 . ? . description=trf scaffold_33 ensembl protein_coding_gene 478112 479201 . + . ID=Physo134728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330118;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 478112 479201 . + . ID=Physo134728;Parent=Physo134728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 478112 479152 . + 0 ID=Physo134728;Parent=Physo134728;rank=1 scaffold_33 . exon 478112 479201 . + . ID=Physo134728.1;Parent=Physo134728;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_33 ensembl protein_coding_gene 483077 483909 . + . ID=Physo134729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330119;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 483077 483909 . + . ID=Physo134729;Parent=Physo134729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 483077 483909 . + . ID=Physo134729.1;Parent=Physo134729;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 . CDS 483145 483909 . + 0 ID=Physo134729;Parent=Physo134729;rank=1 scaffold_33 ensembl protein_coding_gene 487096 487721 . + . ID=Physo134730;biotype=protein_coding;description=Elicitin-like protein SOL11B [Source:UniProtKB/TrEMBL%3BAcc:Q2N076];external_name=estExt_fgenesh1_pg.C_330120;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 487096 487721 . + . ID=Physo134730;Parent=Physo134730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 487096 487632 . + 0 ID=Physo134730;Parent=Physo134730;rank=1 scaffold_33 . exon 487096 487721 . + . ID=Physo134730.1;Parent=Physo134730;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_33 . repeat_region 488753 488787 . ? . description=dust scaffold_33 . biological_region 489062 489066 0.999 + . logic_name=eponine scaffold_33 . biological_region 489225 489229 0.999 + . logic_name=eponine scaffold_33 . biological_region 489249 489255 0.999 + . logic_name=eponine scaffold_33 . biological_region 489253 489253 0.999 - . logic_name=eponine scaffold_33 . biological_region 489740 489748 0.999 + . logic_name=eponine scaffold_33 . biological_region 489769 489772 0.999 + . logic_name=eponine scaffold_33 . biological_region 489831 489833 0.999 + . logic_name=eponine scaffold_33 . biological_region 489838 489842 0.999 - . logic_name=eponine scaffold_33 . biological_region 489913 489929 0.999 + . logic_name=eponine scaffold_33 . biological_region 490009 490011 0.999 - . logic_name=eponine scaffold_33 . biological_region 490886 490889 0.999 - . logic_name=eponine scaffold_33 . biological_region 490908 490909 0.999 - . logic_name=eponine scaffold_33 . repeat_region 494344 494351 . ? . description=dust scaffold_33 . repeat_region 494576 494583 . ? . description=dust scaffold_33 ensembl protein_coding_gene 489632 491066 . - . ID=Physo108800;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_330002;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 489632 491066 . - . ID=Physo108800;Parent=Physo108800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 489632 490132 . - 0 ID=Physo108800;Parent=Physo108800;rank=2 scaffold_33 . exon 489632 490132 . - . ID=Physo108800.2;Parent=Physo108800;constitutive=1;rank=2 scaffold_33 . CDS 490206 491066 . - 0 ID=Physo108800;Parent=Physo108800;rank=1 scaffold_33 . exon 490206 491066 . - . ID=Physo108800.1;Parent=Physo108800;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 488539 489187 . - . ID=Physo134731;biotype=protein_coding;description=Elicitin-like protein SOL11A [Source:UniProtKB/TrEMBL%3BAcc:Q2N077];external_name=estExt_fgenesh1_pg.C_330121;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 488539 489187 . - . ID=Physo134731;Parent=Physo134731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 488539 489187 . - . ID=Physo134731.1;Parent=Physo134731;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_33 . CDS 488593 489165 . - 0 ID=Physo134731;Parent=Physo134731;rank=1 scaffold_33 ensembl protein_coding_gene 491364 492707 . - . ID=Physo134733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330123;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 491364 492707 . - . ID=Physo134733;Parent=Physo134733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 491364 492707 . - 0 ID=Physo134733;Parent=Physo134733;rank=1 scaffold_33 . exon 491364 492707 . - . ID=Physo134733.1;Parent=Physo134733;constitutive=1;rank=1 scaffold_33 . repeat_region 498139 498159 . ? . description=trf scaffold_33 . repeat_region 501285 501318 . ? . description=trf scaffold_33 . repeat_region 505786 505806 . ? . description=trf scaffold_33 ensembl protein_coding_gene 503805 506663 . + . ID=Physo134734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330124;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 503805 506663 . + . ID=Physo134734;Parent=Physo134734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 503805 505255 . + 0 ID=Physo134734;Parent=Physo134734;rank=1 scaffold_33 . exon 503805 505255 . + . ID=Physo134734.1;Parent=Physo134734;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 505542 505608 . + 0 ID=Physo134734;Parent=Physo134734;rank=2 scaffold_33 . exon 505542 505608 . + . ID=Physo134734.2;Parent=Physo134734;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 505650 506053 . + 0 ID=Physo134734;Parent=Physo134734;rank=3 scaffold_33 . exon 505650 506053 . + . ID=Physo134734.3;Parent=Physo134734;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_33 . CDS 506082 506253 . + 0 ID=Physo134734;Parent=Physo134734;rank=4 scaffold_33 . exon 506082 506253 . + . ID=Physo134734.4;Parent=Physo134734;constitutive=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 506295 506663 . + 0 ID=Physo134734;Parent=Physo134734;rank=5 scaffold_33 . exon 506295 506663 . + . ID=Physo134734.5;Parent=Physo134734;constitutive=1;rank=5 scaffold_33 . biological_region 509262 509266 0.999 + . logic_name=eponine scaffold_33 . repeat_region 512375 512889 . + . description=GypsyPi-1c_I-int scaffold_33 . biological_region 513439 513440 0.999 + . logic_name=eponine scaffold_33 . repeat_region 513489 516446 . + . description=GypsyPi-1c_I-int scaffold_33 . biological_region 515881 515886 0.999 + . logic_name=eponine scaffold_33 . repeat_region 516924 517061 . + . description=GypsyPi-1c_I-int scaffold_33 ensembl protein_coding_gene 508314 510590 . - . ID=Physo134735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330125;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 508314 510590 . - . ID=Physo134735;Parent=Physo134735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 508314 508420 . - 0 ID=Physo134735;Parent=Physo134735;rank=4 scaffold_33 . exon 508314 508420 . - . ID=Physo134735.4;Parent=Physo134735;constitutive=1;ensembl_phase=1;rank=4 scaffold_33 . CDS 508477 509265 . - 0 ID=Physo134735;Parent=Physo134735;rank=3 scaffold_33 . exon 508477 509265 . - . ID=Physo134735.3;Parent=Physo134735;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_33 . CDS 509318 510271 . - 0 ID=Physo134735;Parent=Physo134735;rank=2 scaffold_33 . exon 509318 510271 . - . ID=Physo134735.2;Parent=Physo134735;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 510539 510590 . - 0 ID=Physo134735;Parent=Physo134735;rank=1 scaffold_33 . exon 510539 510590 . - . ID=Physo134735.1;Parent=Physo134735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 ensembl protein_coding_gene 512581 517023 . + . ID=Physo134736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330126;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 512581 517023 . + . ID=Physo134736;Parent=Physo134736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 512581 512702 . + 0 ID=Physo134736;Parent=Physo134736;rank=1 scaffold_33 . exon 512581 512702 . + . ID=Physo134736.1;Parent=Physo134736;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 512888 515399 . + 0 ID=Physo134736;Parent=Physo134736;rank=2 scaffold_33 . exon 512888 515399 . + . ID=Physo134736.2;Parent=Physo134736;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 515427 516104 . + 0 ID=Physo134736;Parent=Physo134736;rank=3 scaffold_33 . exon 515427 516104 . + . ID=Physo134736.3;Parent=Physo134736;constitutive=1;rank=3 scaffold_33 . CDS 516146 516158 . + 0 ID=Physo134736;Parent=Physo134736;rank=4 scaffold_33 . exon 516146 516158 . + . ID=Physo134736.4;Parent=Physo134736;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_33 . CDS 516292 516575 . + 0 ID=Physo134736;Parent=Physo134736;rank=5 scaffold_33 . exon 516292 516575 . + . ID=Physo134736.5;Parent=Physo134736;constitutive=1;ensembl_phase=1;rank=5 scaffold_33 . CDS 516676 517023 . + 0 ID=Physo134736;Parent=Physo134736;rank=6 scaffold_33 . exon 516676 517023 . + . ID=Physo134736.6;Parent=Physo134736;constitutive=1;rank=6 scaffold_33 . repeat_region 520560 520635 . ? . description=trf scaffold_33 . repeat_region 524367 524375 . ? . description=dust scaffold_33 ensembl protein_coding_gene 523688 527667 . + . ID=Physo134737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330127;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 523688 527667 . + . ID=Physo134737;Parent=Physo134737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 523688 524336 . + 0 ID=Physo134737;Parent=Physo134737;rank=1 scaffold_33 . exon 523688 524336 . + . ID=Physo134737.1;Parent=Physo134737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 524395 525161 . + 0 ID=Physo134737;Parent=Physo134737;rank=2 scaffold_33 . exon 524395 525161 . + . ID=Physo134737.2;Parent=Physo134737;constitutive=1;ensembl_phase=1;rank=2 scaffold_33 . CDS 525277 526770 . + 0 ID=Physo134737;Parent=Physo134737;rank=3 scaffold_33 . exon 525277 526770 . + . ID=Physo134737.3;Parent=Physo134737;constitutive=1;rank=3 scaffold_33 . CDS 526849 527497 . + 0 ID=Physo134737;Parent=Physo134737;rank=4 scaffold_33 . exon 526849 527497 . + . ID=Physo134737.4;Parent=Physo134737;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_33 . CDS 527606 527667 . + 0 ID=Physo134737;Parent=Physo134737;rank=5 scaffold_33 . repeat_region 524981 527359 . + . description=GypsyPi-1c_I-int scaffold_33 . biological_region 528518 528522 0.999 - . logic_name=eponine scaffold_33 . biological_region 529066 529074 0.999 + . logic_name=eponine scaffold_33 . biological_region 529069 529069 0.999 - . logic_name=eponine scaffold_33 . biological_region 529098 529098 0.999 + . logic_name=eponine scaffold_33 . biological_region 529185 529187 0.999 - . logic_name=eponine scaffold_33 . biological_region 534774 534775 0.999 + . logic_name=eponine scaffold_33 . exon 527606 527667 . + . ID=Physo134737.5;Parent=Physo134737;constitutive=1;ensembl_phase=1;rank=5 scaffold_33 ensembl protein_coding_gene 527919 529432 . - . ID=Physo134738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330128;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 527919 529432 . - . ID=Physo134738;Parent=Physo134738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 527919 529115 . - 0 ID=Physo134738;Parent=Physo134738;rank=2 scaffold_33 . exon 527919 529115 . - . ID=Physo134738.2;Parent=Physo134738;constitutive=1;rank=2 scaffold_33 . CDS 529169 529432 . - 0 ID=Physo134738;Parent=Physo134738;rank=1 scaffold_33 . exon 529169 529432 . - . ID=Physo134738.1;Parent=Physo134738;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 534623 535425 . - . ID=Physo134739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330129;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 534623 535425 . - . ID=Physo134739;Parent=Physo134739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 534623 535109 . - 0 ID=Physo134739;Parent=Physo134739;rank=3 scaffold_33 . exon 534623 535109 . - . ID=Physo134739.3;Parent=Physo134739;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 535224 535310 . - 0 ID=Physo134739;Parent=Physo134739;rank=2 scaffold_33 . exon 535224 535310 . - . ID=Physo134739.2;Parent=Physo134739;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 535352 535425 . - 0 ID=Physo134739;Parent=Physo134739;rank=1 scaffold_33 . exon 535352 535425 . - . ID=Physo134739.1;Parent=Physo134739;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 536432 537175 . - . ID=Physo134740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330130;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 536432 537175 . - . ID=Physo134740;Parent=Physo134740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 536432 537175 . - 0 ID=Physo134740;Parent=Physo134740;rank=1 scaffold_33 . exon 536432 537175 . - . ID=Physo134740.1;Parent=Physo134740;constitutive=1;rank=1 scaffold_33 . repeat_region 539052 539059 . ? . description=dust scaffold_33 . repeat_region 539267 539329 . ? . description=dust scaffold_33 . repeat_region 547093 547102 . ? . description=dust scaffold_33 ensembl protein_coding_gene 539180 544125 . + . ID=Physo134741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330131;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 539180 544125 . + . ID=Physo134741;Parent=Physo134741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 539180 539777 . + 0 ID=Physo134741;Parent=Physo134741;rank=1 scaffold_33 . exon 539180 539777 . + . ID=Physo134741.1;Parent=Physo134741;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 539850 541200 . + 0 ID=Physo134741;Parent=Physo134741;rank=2 scaffold_33 . exon 539850 541200 . + . ID=Physo134741.2;Parent=Physo134741;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_33 . CDS 541557 542036 . + 0 ID=Physo134741;Parent=Physo134741;rank=3 scaffold_33 . exon 541557 542036 . + . ID=Physo134741.3;Parent=Physo134741;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_33 . CDS 542088 542221 . + 0 ID=Physo134741;Parent=Physo134741;rank=4 scaffold_33 . exon 542088 542221 . + . ID=Physo134741.4;Parent=Physo134741;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 542383 542569 . + 0 ID=Physo134741;Parent=Physo134741;rank=5 scaffold_33 . exon 542383 542569 . + . ID=Physo134741.5;Parent=Physo134741;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_33 . CDS 542703 544125 . + 0 ID=Physo134741;Parent=Physo134741;rank=6 scaffold_33 . exon 542703 544125 . + . ID=Physo134741.6;Parent=Physo134741;constitutive=1;ensembl_phase=2;rank=6 scaffold_33 . repeat_region 548120 548151 . ? . description=trf scaffold_33 . repeat_region 548982 549041 . ? . description=trf scaffold_33 . biological_region 550248 550249 0.999 + . logic_name=eponine scaffold_33 . biological_region 555022 555022 0.999 - . logic_name=eponine scaffold_33 . biological_region 555039 555043 0.999 + . logic_name=eponine scaffold_33 . biological_region 555076 555081 0.999 + . logic_name=eponine scaffold_33 . biological_region 555246 555250 0.999 - . logic_name=eponine scaffold_33 . biological_region 555259 555261 0.999 + . logic_name=eponine scaffold_33 . biological_region 555259 555264 0.999 - . logic_name=eponine scaffold_33 . repeat_region 555446 555517 . + . description=(CAGC)n scaffold_33 . biological_region 555617 555620 0.999 + . logic_name=eponine scaffold_33 . biological_region 555772 555774 0.999 - . logic_name=eponine scaffold_33 . biological_region 555827 555831 0.999 - . logic_name=eponine scaffold_33 . repeat_region 556267 556295 . ? . description=trf scaffold_33 ensembl protein_coding_gene 550615 552498 . - . ID=Physo134742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330132;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 550615 552498 . - . ID=Physo134742;Parent=Physo134742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 550615 550998 . - 0 ID=Physo134742;Parent=Physo134742;rank=4 scaffold_33 . exon 550615 550998 . - . ID=Physo134742.4;Parent=Physo134742;constitutive=1;rank=4 scaffold_33 . CDS 551051 551345 . - 0 ID=Physo134742;Parent=Physo134742;rank=3 scaffold_33 . exon 551051 551345 . - . ID=Physo134742.3;Parent=Physo134742;constitutive=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 551719 552070 . - 0 ID=Physo134742;Parent=Physo134742;rank=2 scaffold_33 . exon 551719 552070 . - . ID=Physo134742.2;Parent=Physo134742;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_33 . CDS 552144 552498 . - 0 ID=Physo134742;Parent=Physo134742;rank=1 scaffold_33 . exon 552144 552498 . - . ID=Physo134742.1;Parent=Physo134742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 ensembl protein_coding_gene 555394 556268 . + . ID=Physo134743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330133;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 555394 556268 . + . ID=Physo134743;Parent=Physo134743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . exon 555394 556268 . + . ID=Physo134743.1;Parent=Physo134743;constitutive=1;ensembl_phase=-1;rank=1 scaffold_33 . CDS 555510 556268 . + 0 ID=Physo134743;Parent=Physo134743;rank=1 scaffold_33 ensembl protein_coding_gene 556665 558947 . - . ID=Physo134744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330134;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 556665 558947 . - . ID=Physo134744;Parent=Physo134744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 556665 557558 . - 0 ID=Physo134744;Parent=Physo134744;rank=2 scaffold_33 . exon 556665 557558 . - . ID=Physo134744.2;Parent=Physo134744;constitutive=1;rank=2 scaffold_33 . CDS 557664 558947 . - 0 ID=Physo134744;Parent=Physo134744;rank=1 scaffold_33 . repeat_region 558520 558545 . ? . description=dust scaffold_33 . repeat_region 558520 558578 . + . description=(TCG)n scaffold_33 . repeat_region 566613 566620 . ? . description=dust scaffold_33 . exon 557664 558947 . - . ID=Physo134744.1;Parent=Physo134744;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 561881 563569 . - . ID=Physo134746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330136;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 561881 563569 . - . ID=Physo134746;Parent=Physo134746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 561881 563569 . - 0 ID=Physo134746;Parent=Physo134746;rank=1 scaffold_33 . exon 561881 563569 . - . ID=Physo134746.1;Parent=Physo134746;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 564315 565181 . - . ID=Physo134747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330137;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 564315 565181 . - . ID=Physo134747;Parent=Physo134747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 564315 565181 . - 0 ID=Physo134747;Parent=Physo134747;rank=1 scaffold_33 . exon 564315 565181 . - . ID=Physo134747.1;Parent=Physo134747;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 560363 560931 . + . ID=Physo157028;biotype=protein_coding;external_name=C_scaffold_33000017;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 560363 560931 . + . ID=Physo157028;Parent=Physo157028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 560363 560631 . + 0 ID=Physo157028;Parent=Physo157028;rank=1 scaffold_33 . exon 560363 560631 . + . ID=Physo157028.1;Parent=Physo157028;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 560752 560931 . + 0 ID=Physo157028;Parent=Physo157028;rank=2 scaffold_33 . exon 560752 560931 . + . ID=Physo157028.2;Parent=Physo157028;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . biological_region 571352 571358 0.999 - . logic_name=eponine scaffold_33 . biological_region 571407 571411 0.999 - . logic_name=eponine scaffold_33 . biological_region 571409 571413 0.999 + . logic_name=eponine scaffold_33 . biological_region 572430 572431 0.999 + . logic_name=eponine scaffold_33 . biological_region 572432 572434 0.999 - . logic_name=eponine scaffold_33 . biological_region 572437 572440 0.999 - . logic_name=eponine scaffold_33 . biological_region 573022 573027 0.999 - . logic_name=eponine scaffold_33 . biological_region 573286 573294 0.999 + . logic_name=eponine scaffold_33 . biological_region 574320 574322 0.999 - . logic_name=eponine scaffold_33 . repeat_region 574883 574948 . ? . description=trf scaffold_33 . biological_region 575035 575040 0.999 + . logic_name=eponine scaffold_33 . biological_region 576753 576760 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 569309 573534 . + . ID=Physo134748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330138;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 569309 573534 . + . ID=Physo134748;Parent=Physo134748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 569309 569700 . + 0 ID=Physo134748;Parent=Physo134748;rank=1 scaffold_33 . exon 569309 569700 . + . ID=Physo134748.1;Parent=Physo134748;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 569795 570148 . + 0 ID=Physo134748;Parent=Physo134748;rank=2 scaffold_33 . exon 569795 570148 . + . ID=Physo134748.2;Parent=Physo134748;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 570220 571593 . + 0 ID=Physo134748;Parent=Physo134748;rank=3 scaffold_33 . exon 570220 571593 . + . ID=Physo134748.3;Parent=Physo134748;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_33 . CDS 571727 573470 . + 0 ID=Physo134748;Parent=Physo134748;rank=4 scaffold_33 . exon 571727 573470 . + . ID=Physo134748.4;Parent=Physo134748;constitutive=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 573496 573534 . + 0 ID=Physo134748;Parent=Physo134748;rank=5 scaffold_33 . exon 573496 573534 . + . ID=Physo134748.5;Parent=Physo134748;constitutive=1;rank=5 scaffold_33 ensembl protein_coding_gene 573799 575481 . - . ID=Physo134749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330139;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 573799 575481 . - . ID=Physo134749;Parent=Physo134749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 573799 575481 . - 0 ID=Physo134749;Parent=Physo134749;rank=1 scaffold_33 . exon 573799 575481 . - . ID=Physo134749.1;Parent=Physo134749;constitutive=1;rank=1 scaffold_33 . repeat_region 583615 583625 . ? . description=dust scaffold_33 ensembl tRNA_gene 583524 583594 . - . ID=EPrPSOG00000000081;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_33 ensembl transcript 583524 583594 . - . ID=EPrPSOT00000000081;Parent=EPrPSOG00000000081;biotype=tRNA;logic_name=ncrna_eg scaffold_33 . exon 583524 583594 . - . ID=EPrPSOE00000000081;Parent=EPrPSOT00000000081;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 ensembl protein_coding_gene 577519 578385 . + . ID=Physo134750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330140;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 577519 578385 . + . ID=Physo134750;Parent=Physo134750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 577519 578385 . + 0 ID=Physo134750;Parent=Physo134750;rank=1 scaffold_33 . exon 577519 578385 . + . ID=Physo134750.1;Parent=Physo134750;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 581291 583542 . + . ID=Physo134752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330142;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 581291 583542 . + . ID=Physo134752;Parent=Physo134752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 581291 581336 . + 0 ID=Physo134752;Parent=Physo134752;rank=1 scaffold_33 . exon 581291 581336 . + . ID=Physo134752.1;Parent=Physo134752;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_33 . CDS 581562 582411 . + 0 ID=Physo134752;Parent=Physo134752;rank=2 scaffold_33 . exon 581562 582411 . + . ID=Physo134752.2;Parent=Physo134752;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_33 . CDS 582434 582768 . + 0 ID=Physo134752;Parent=Physo134752;rank=3 scaffold_33 . exon 582434 582768 . + . ID=Physo134752.3;Parent=Physo134752;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 582819 583248 . + 0 ID=Physo134752;Parent=Physo134752;rank=4 scaffold_33 . exon 582819 583248 . + . ID=Physo134752.4;Parent=Physo134752;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_33 . CDS 583338 583542 . + 0 ID=Physo134752;Parent=Physo134752;rank=5 scaffold_33 . exon 583338 583542 . + . ID=Physo134752.5;Parent=Physo134752;constitutive=1;ensembl_phase=2;rank=5 scaffold_33 ensembl protein_coding_gene 579641 580534 . - . ID=Physo157031;biotype=protein_coding;external_name=C_scaffold_33000020;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 579641 580534 . - . ID=Physo157031;Parent=Physo157031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 579641 580534 . - 0 ID=Physo157031;Parent=Physo157031;rank=1 scaffold_33 . exon 579641 580534 . - . ID=Physo157031.1;Parent=Physo157031;constitutive=1;rank=1 scaffold_33 . biological_region 595156 595157 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 589395 590300 . + . ID=Physo134753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330143;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 589395 590300 . + . ID=Physo134753;Parent=Physo134753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 589395 590300 . + 0 ID=Physo134753;Parent=Physo134753;rank=1 scaffold_33 . exon 589395 590300 . + . ID=Physo134753.1;Parent=Physo134753;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 590587 595183 . - . ID=Physo157033;biotype=protein_coding;external_name=C_scaffold_33000022;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 590587 595183 . - . ID=Physo157033;Parent=Physo157033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 590587 590625 . - 0 ID=Physo157033;Parent=Physo157033;rank=12 scaffold_33 . exon 590587 590625 . - . ID=Physo157033.12;Parent=Physo157033;constitutive=1;rank=12 scaffold_33 . CDS 590698 590828 . - 0 ID=Physo157033;Parent=Physo157033;rank=11 scaffold_33 . exon 590698 590828 . - . ID=Physo157033.11;Parent=Physo157033;constitutive=1;ensembl_phase=1;rank=11 scaffold_33 . CDS 590979 591180 . - 0 ID=Physo157033;Parent=Physo157033;rank=10 scaffold_33 . exon 590979 591180 . - . ID=Physo157033.10;Parent=Physo157033;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_33 . CDS 591257 592125 . - 0 ID=Physo157033;Parent=Physo157033;rank=9 scaffold_33 . exon 591257 592125 . - . ID=Physo157033.9;Parent=Physo157033;constitutive=1;ensembl_phase=1;rank=9 scaffold_33 . CDS 592282 592489 . - 0 ID=Physo157033;Parent=Physo157033;rank=8 scaffold_33 . exon 592282 592489 . - . ID=Physo157033.8;Parent=Physo157033;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_33 . CDS 593093 593238 . - 0 ID=Physo157033;Parent=Physo157033;rank=7 scaffold_33 . exon 593093 593238 . - . ID=Physo157033.7;Parent=Physo157033;constitutive=1;ensembl_phase=1;rank=7 scaffold_33 . CDS 593344 593641 . - 0 ID=Physo157033;Parent=Physo157033;rank=6 scaffold_33 . exon 593344 593641 . - . ID=Physo157033.6;Parent=Physo157033;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_33 . CDS 593675 593887 . - 0 ID=Physo157033;Parent=Physo157033;rank=5 scaffold_33 . exon 593675 593887 . - . ID=Physo157033.5;Parent=Physo157033;constitutive=1;rank=5 scaffold_33 . CDS 593912 594254 . - 0 ID=Physo157033;Parent=Physo157033;rank=4 scaffold_33 . exon 593912 594254 . - . ID=Physo157033.4;Parent=Physo157033;constitutive=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 594294 594463 . - 0 ID=Physo157033;Parent=Physo157033;rank=3 scaffold_33 . exon 594294 594463 . - . ID=Physo157033.3;Parent=Physo157033;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_33 . CDS 594503 594580 . - 0 ID=Physo157033;Parent=Physo157033;rank=2 scaffold_33 . exon 594503 594580 . - . ID=Physo157033.2;Parent=Physo157033;constitutive=1;rank=2 scaffold_33 . CDS 594620 595183 . - 0 ID=Physo157033;Parent=Physo157033;rank=1 scaffold_33 . exon 594620 595183 . - . ID=Physo157033.1;Parent=Physo157033;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 596307 598096 . - . ID=Physo157034;biotype=protein_coding;external_name=C_scaffold_33000023;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 596307 598096 . - . ID=Physo157034;Parent=Physo157034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 596307 597383 . - 0 ID=Physo157034;Parent=Physo157034;rank=3 scaffold_33 . exon 596307 597383 . - . ID=Physo157034.3;Parent=Physo157034;constitutive=1;rank=3 scaffold_33 . CDS 597430 597592 . - 0 ID=Physo157034;Parent=Physo157034;rank=2 scaffold_33 . CDS 598089 598096 . - 0 ID=Physo157034;Parent=Physo157034;rank=1 scaffold_33 . repeat_region 598399 598415 . ? . description=dust scaffold_33 . repeat_region 601257 601289 . ? . description=dust scaffold_33 . repeat_region 601484 601492 . ? . description=dust scaffold_33 . repeat_region 601657 601677 . ? . description=trf scaffold_33 . repeat_region 602079 602136 . ? . description=trf scaffold_33 . repeat_region 602084 602146 . ? . description=trf scaffold_33 . repeat_region 602109 602147 . ? . description=dust scaffold_33 . repeat_region 602114 602159 . ? . description=trf scaffold_33 ensembl protein_coding_gene 605158 605793 . + . ID=Physo134756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330146;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 605158 605793 . + . ID=Physo134756;Parent=Physo134756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 605158 605793 . + 0 ID=Physo134756;Parent=Physo134756;rank=1 scaffold_33 . exon 605158 605793 . + . ID=Physo134756.1;Parent=Physo134756;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 606804 608165 . - . ID=Physo134757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330147;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 606804 608165 . - . ID=Physo134757;Parent=Physo134757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 606804 608165 . - 0 ID=Physo134757;Parent=Physo134757;rank=1 scaffold_33 . exon 606804 608165 . - . ID=Physo134757.1;Parent=Physo134757;constitutive=1;rank=1 scaffold_33 . exon 597430 597592 . - . ID=Physo157034.2;Parent=Physo157034;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . exon 598089 598096 . - . ID=Physo157034.1;Parent=Physo157034;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . biological_region 607076 607078 0.999 - . logic_name=eponine scaffold_33 . biological_region 609392 609393 0.999 - . logic_name=eponine scaffold_33 . biological_region 609464 609465 0.999 - . logic_name=eponine scaffold_33 . biological_region 609481 609482 0.999 + . logic_name=eponine scaffold_33 . biological_region 609574 609579 0.999 - . logic_name=eponine scaffold_33 . biological_region 611474 611480 0.999 - . logic_name=eponine scaffold_33 . biological_region 611815 611822 0.999 - . logic_name=eponine scaffold_33 . biological_region 612074 612076 0.999 + . logic_name=eponine scaffold_33 . biological_region 612170 612173 0.999 - . logic_name=eponine scaffold_33 . biological_region 613281 613285 0.999 + . logic_name=eponine scaffold_33 . biological_region 614229 614231 0.999 - . logic_name=eponine scaffold_33 . biological_region 614490 614491 0.999 - . logic_name=eponine scaffold_33 ensembl protein_coding_gene 614061 618260 . + . ID=Physo134758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330148;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 614061 618260 . + . ID=Physo134758;Parent=Physo134758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 614061 615610 . + 0 ID=Physo134758;Parent=Physo134758;rank=1 scaffold_33 . exon 614061 615610 . + . ID=Physo134758.1;Parent=Physo134758;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 615770 616534 . + 0 ID=Physo134758;Parent=Physo134758;rank=2 scaffold_33 . exon 615770 616534 . + . ID=Physo134758.2;Parent=Physo134758;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_33 . CDS 616597 616718 . + 0 ID=Physo134758;Parent=Physo134758;rank=3 scaffold_33 . exon 616597 616718 . + . ID=Physo134758.3;Parent=Physo134758;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_33 . CDS 616971 617534 . + 0 ID=Physo134758;Parent=Physo134758;rank=4 scaffold_33 . CDS 617763 617981 . + 0 ID=Physo134758;Parent=Physo134758;rank=5 scaffold_33 . CDS 618050 618246 . + 0 ID=Physo134758;Parent=Physo134758;rank=6 scaffold_33 . repeat_region 622208 622215 . ? . description=dust scaffold_33 . repeat_region 623913 623934 . ? . description=trf scaffold_33 . repeat_region 625293 625329 . ? . description=dust scaffold_33 . exon 616971 617534 . + . ID=Physo134758.4;Parent=Physo134758;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_33 . exon 617763 617981 . + . ID=Physo134758.5;Parent=Physo134758;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_33 . exon 618050 618260 . + . ID=Physo134758.6;Parent=Physo134758;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_33 ensembl protein_coding_gene 620311 623437 . + . ID=Physo157035;biotype=protein_coding;external_name=C_scaffold_33000024;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 620311 623437 . + . ID=Physo157035;Parent=Physo157035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 620311 620375 . + 0 ID=Physo157035;Parent=Physo157035;rank=1 scaffold_33 . exon 620311 620375 . + . ID=Physo157035.1;Parent=Physo157035;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_33 . CDS 621399 621858 . + 0 ID=Physo157035;Parent=Physo157035;rank=2 scaffold_33 . exon 621399 621858 . + . ID=Physo157035.2;Parent=Physo157035;constitutive=1;ensembl_phase=2;rank=2 scaffold_33 . CDS 622205 623043 . + 0 ID=Physo157035;Parent=Physo157035;rank=3 scaffold_33 . exon 622205 623043 . + . ID=Physo157035.3;Parent=Physo157035;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_33 . CDS 623092 623437 . + 0 ID=Physo157035;Parent=Physo157035;rank=4 scaffold_33 . exon 623092 623437 . + . ID=Physo157035.4;Parent=Physo157035;constitutive=1;ensembl_phase=2;rank=4 scaffold_33 . biological_region 632657 632659 0.999 + . logic_name=eponine scaffold_33 . biological_region 632742 632744 0.999 + . logic_name=eponine scaffold_33 . biological_region 632908 632908 0.999 - . logic_name=eponine scaffold_33 . biological_region 633394 633395 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 630870 634730 . + . ID=Physo134760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330150;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 630870 634730 . + . ID=Physo134760;Parent=Physo134760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 630870 631163 . + 0 ID=Physo134760;Parent=Physo134760;rank=1 scaffold_33 . exon 630870 631163 . + . ID=Physo134760.1;Parent=Physo134760;constitutive=1;rank=1 scaffold_33 . CDS 631208 632196 . + 0 ID=Physo134760;Parent=Physo134760;rank=2 scaffold_33 . exon 631208 632196 . + . ID=Physo134760.2;Parent=Physo134760;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_33 . CDS 632314 632406 . + 0 ID=Physo134760;Parent=Physo134760;rank=3 scaffold_33 . exon 632314 632406 . + . ID=Physo134760.3;Parent=Physo134760;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_33 . CDS 632635 634534 . + 0 ID=Physo134760;Parent=Physo134760;rank=4 scaffold_33 . exon 632635 634534 . + . ID=Physo134760.4;Parent=Physo134760;constitutive=1;ensembl_phase=2;rank=4 scaffold_33 . CDS 634554 634730 . + 0 ID=Physo134760;Parent=Physo134760;rank=5 scaffold_33 . exon 634554 634730 . + . ID=Physo134760.5;Parent=Physo134760;constitutive=1;rank=5 scaffold_33 . repeat_region 640220 640227 . ? . description=dust scaffold_33 . repeat_region 641816 641823 . ? . description=dust scaffold_33 ensembl protein_coding_gene 643261 645108 . - . ID=Physo134761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330151;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 643261 645108 . - . ID=Physo134761;Parent=Physo134761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 643261 645108 . - 0 ID=Physo134761;Parent=Physo134761;rank=1 scaffold_33 . exon 643261 645108 . - . ID=Physo134761.1;Parent=Physo134761;constitutive=1;rank=1 scaffold_33 . repeat_region 649836 649939 . ? . description=trf scaffold_33 . repeat_region 649864 649963 . ? . description=trf scaffold_33 . repeat_region 650033 650081 . ? . description=trf scaffold_33 . biological_region 650924 650928 0.999 + . logic_name=eponine scaffold_33 . repeat_region 653316 653383 . ? . description=trf scaffold_33 . repeat_region 653366 653437 . ? . description=trf scaffold_33 . repeat_region 653545 653596 . ? . description=trf scaffold_33 . repeat_region 653545 653596 . ? . description=trf scaffold_33 . repeat_region 653679 654391 . ? . description=trf scaffold_33 . biological_region 653839 653840 0.999 + . logic_name=eponine scaffold_33 . biological_region 654258 654261 0.999 + . logic_name=eponine scaffold_33 . biological_region 654298 654299 0.999 + . logic_name=eponine scaffold_33 ensembl protein_coding_gene 647674 648732 . + . ID=Physo134762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330152;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 647674 648732 . + . ID=Physo134762;Parent=Physo134762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 647674 648732 . + 0 ID=Physo134762;Parent=Physo134762;rank=1 scaffold_33 . exon 647674 648732 . + . ID=Physo134762.1;Parent=Physo134762;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 649799 650206 . + . ID=Physo134763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330153;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 649799 650206 . + . ID=Physo134763;Parent=Physo134763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 649799 650206 . + 0 ID=Physo134763;Parent=Physo134763;rank=1 scaffold_33 . exon 649799 650206 . + . ID=Physo134763.1;Parent=Physo134763;constitutive=1;rank=1 scaffold_33 ensembl protein_coding_gene 653118 655179 . + . ID=Physo134764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_330154;logic_name=jgi_physo1_1 scaffold_33 ensembl transcript 653118 655179 . + . ID=Physo134764;Parent=Physo134764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_33 . CDS 653118 655070 . + 0 ID=Physo134764;Parent=Physo134764;rank=1 scaffold_33 . exon 653118 655179 . + . ID=Physo134764.1;Parent=Physo134764;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_32 1 676201 scaffold_32 . biological_region 57 61 0.999 + . logic_name=eponine scaffold_32 . biological_region 153 157 0.999 + . logic_name=eponine scaffold_32 . biological_region 162 165 0.999 - . logic_name=eponine scaffold_32 . biological_region 209 213 0.999 - . logic_name=eponine scaffold_32 . biological_region 218 220 0.999 + . logic_name=eponine scaffold_32 . biological_region 245 249 0.999 + . logic_name=eponine scaffold_32 . biological_region 265 271 0.999 + . logic_name=eponine scaffold_32 . biological_region 292 298 0.999 + . logic_name=eponine scaffold_32 . biological_region 438 441 0.999 + . logic_name=eponine scaffold_32 . biological_region 477 478 0.999 + . logic_name=eponine scaffold_32 . biological_region 755 757 0.999 - . logic_name=eponine scaffold_32 . repeat_region 1136 6182 . ? . description=dust scaffold_32 . biological_region 7794 7798 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 36 869 . - . ID=Physo134430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320001;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 36 869 . - . ID=Physo134430;Parent=Physo134430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 36 869 . - 0 ID=Physo134430;Parent=Physo134430;rank=1 scaffold_32 . exon 36 869 . - . ID=Physo134430.1;Parent=Physo134430;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 6450 8456 . + . ID=Physo134431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320002;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 6450 8456 . + . ID=Physo134431;Parent=Physo134431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 6450 6511 . + 0 ID=Physo134431;Parent=Physo134431;rank=1 scaffold_32 . exon 6450 6511 . + . ID=Physo134431.1;Parent=Physo134431;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 6544 8387 . + 0 ID=Physo134431;Parent=Physo134431;rank=2 scaffold_32 . exon 6544 8387 . + . ID=Physo134431.2;Parent=Physo134431;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 8431 8456 . + 0 ID=Physo134431;Parent=Physo134431;rank=3 scaffold_32 . exon 8431 8456 . + . ID=Physo134431.3;Parent=Physo134431;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . repeat_region 11100 11197 . ? . description=trf scaffold_32 . repeat_region 19559 19656 . ? . description=trf scaffold_32 ensembl protein_coding_gene 10064 24102 . + . ID=Physo156950;biotype=protein_coding;external_name=C_scaffold_32000001;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 10064 24102 . + . ID=Physo156950;Parent=Physo156950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 10064 11448 . + 0 ID=Physo156950;Parent=Physo156950;rank=1 scaffold_32 . exon 10064 11448 . + . ID=Physo156950.1;Parent=Physo156950;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 18897 20749 . + 0 ID=Physo156950;Parent=Physo156950;rank=2 scaffold_32 . exon 18897 20749 . + . ID=Physo156950.2;Parent=Physo156950;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 20792 21223 . + 0 ID=Physo156950;Parent=Physo156950;rank=3 scaffold_32 . CDS 21422 21712 . + 0 ID=Physo156950;Parent=Physo156950;rank=4 scaffold_32 . CDS 21782 21901 . + 0 ID=Physo156950;Parent=Physo156950;rank=5 scaffold_32 . CDS 21932 22156 . + 0 ID=Physo156950;Parent=Physo156950;rank=6 scaffold_32 . CDS 22223 22426 . + 0 ID=Physo156950;Parent=Physo156950;rank=7 scaffold_32 . CDS 22472 22979 . + 0 ID=Physo156950;Parent=Physo156950;rank=8 scaffold_32 . CDS 23073 23494 . + 0 ID=Physo156950;Parent=Physo156950;rank=9 scaffold_32 . CDS 23540 23677 . + 0 ID=Physo156950;Parent=Physo156950;rank=10 scaffold_32 . CDS 23699 23971 . + 0 ID=Physo156950;Parent=Physo156950;rank=11 scaffold_32 . CDS 24002 24102 . + 0 ID=Physo156950;Parent=Physo156950;rank=12 scaffold_32 . biological_region 20074 20078 0.999 + . logic_name=eponine scaffold_32 . biological_region 20129 20137 0.999 + . logic_name=eponine scaffold_32 . biological_region 20271 20276 0.999 + . logic_name=eponine scaffold_32 . biological_region 20279 20279 0.999 - . logic_name=eponine scaffold_32 . biological_region 20333 20335 0.999 + . logic_name=eponine scaffold_32 . biological_region 20384 20388 0.999 - . logic_name=eponine scaffold_32 . biological_region 23452 23456 0.999 + . logic_name=eponine scaffold_32 . biological_region 25424 25428 0.999 - . logic_name=eponine scaffold_32 . biological_region 25797 25801 0.999 + . logic_name=eponine scaffold_32 . biological_region 26062 26064 0.999 - . logic_name=eponine scaffold_32 . biological_region 26116 26117 0.999 + . logic_name=eponine scaffold_32 . biological_region 26348 26351 0.999 + . logic_name=eponine scaffold_32 . biological_region 26957 26958 0.999 - . logic_name=eponine scaffold_32 . biological_region 29024 29028 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 24415 27356 . - . ID=Physo134433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320004;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 24415 27356 . - . ID=Physo134433;Parent=Physo134433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 24415 26451 . - 0 ID=Physo134433;Parent=Physo134433;rank=3 scaffold_32 . exon 24415 26451 . - . ID=Physo134433.3;Parent=Physo134433;constitutive=1;rank=3 scaffold_32 . CDS 26530 27020 . - 0 ID=Physo134433;Parent=Physo134433;rank=2 scaffold_32 . exon 26530 27020 . - . ID=Physo134433.2;Parent=Physo134433;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 27143 27356 . - 0 ID=Physo134433;Parent=Physo134433;rank=1 scaffold_32 . exon 27143 27356 . - . ID=Physo134433.1;Parent=Physo134433;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 27525 29354 . + . ID=Physo134434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320005;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 27525 29354 . + . ID=Physo134434;Parent=Physo134434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 27525 27660 . + 0 ID=Physo134434;Parent=Physo134434;rank=1 scaffold_32 . exon 27525 27660 . + . ID=Physo134434.1;Parent=Physo134434;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 27734 27786 . + 0 ID=Physo134434;Parent=Physo134434;rank=2 scaffold_32 . exon 27734 27786 . + . ID=Physo134434.2;Parent=Physo134434;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 27894 28012 . + 0 ID=Physo134434;Parent=Physo134434;rank=3 scaffold_32 . exon 27894 28012 . + . ID=Physo134434.3;Parent=Physo134434;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_32 . CDS 28077 28158 . + 0 ID=Physo134434;Parent=Physo134434;rank=4 scaffold_32 . exon 28077 28158 . + . ID=Physo134434.4;Parent=Physo134434;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 28244 28358 . + 0 ID=Physo134434;Parent=Physo134434;rank=5 scaffold_32 . exon 28244 28358 . + . ID=Physo134434.5;Parent=Physo134434;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_32 . CDS 28434 28588 . + 0 ID=Physo134434;Parent=Physo134434;rank=6 scaffold_32 . exon 28434 28588 . + . ID=Physo134434.6;Parent=Physo134434;constitutive=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 28669 28776 . + 0 ID=Physo134434;Parent=Physo134434;rank=7 scaffold_32 . exon 28669 28776 . + . ID=Physo134434.7;Parent=Physo134434;constitutive=1;rank=7 scaffold_32 . CDS 28856 29108 . + 0 ID=Physo134434;Parent=Physo134434;rank=8 scaffold_32 . exon 28856 29108 . + . ID=Physo134434.8;Parent=Physo134434;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_32 . CDS 29194 29354 . + 0 ID=Physo134434;Parent=Physo134434;rank=9 scaffold_32 . exon 29194 29354 . + . ID=Physo134434.9;Parent=Physo134434;constitutive=1;ensembl_phase=1;rank=9 scaffold_32 . exon 20792 21223 . + . ID=Physo156950.3;Parent=Physo156950;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_32 . exon 21422 21712 . + . ID=Physo156950.4;Parent=Physo156950;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_32 . exon 21782 21901 . + . ID=Physo156950.5;Parent=Physo156950;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_32 . exon 21932 22156 . + . ID=Physo156950.6;Parent=Physo156950;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_32 . exon 22223 22426 . + . ID=Physo156950.7;Parent=Physo156950;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_32 . exon 22472 22979 . + . ID=Physo156950.8;Parent=Physo156950;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_32 . exon 23073 23494 . + . ID=Physo156950.9;Parent=Physo156950;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_32 . exon 23540 23677 . + . ID=Physo156950.10;Parent=Physo156950;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_32 . exon 23699 23971 . + . ID=Physo156950.11;Parent=Physo156950;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_32 . exon 24002 24102 . + . ID=Physo156950.12;Parent=Physo156950;constitutive=1;ensembl_phase=1;rank=12 scaffold_32 ensembl protein_coding_gene 29650 31219 . + . ID=Physo156954;biotype=protein_coding;external_name=C_scaffold_32000005;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 29650 31219 . + . ID=Physo156954;Parent=Physo156954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 29650 29652 . + 0 ID=Physo156954;Parent=Physo156954;rank=1 scaffold_32 . exon 29650 29652 . + . ID=Physo156954.1;Parent=Physo156954;constitutive=1;rank=1 scaffold_32 . CDS 29759 29831 . + 0 ID=Physo156954;Parent=Physo156954;rank=2 scaffold_32 . exon 29759 29831 . + . ID=Physo156954.2;Parent=Physo156954;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 29928 30031 . + 0 ID=Physo156954;Parent=Physo156954;rank=3 scaffold_32 . CDS 30122 30365 . + 0 ID=Physo156954;Parent=Physo156954;rank=4 scaffold_32 . CDS 30445 30660 . + 0 ID=Physo156954;Parent=Physo156954;rank=5 scaffold_32 . CDS 30930 31219 . + 0 ID=Physo156954;Parent=Physo156954;rank=6 scaffold_32 . repeat_region 30702 30718 . ? . description=dust scaffold_32 . repeat_region 30724 30765 . ? . description=dust scaffold_32 . repeat_region 31451 31473 . ? . description=dust scaffold_32 . repeat_region 31451 31477 . ? . description=trf scaffold_32 ensembl protein_coding_gene 35158 36359 . - . ID=Physo134437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320008;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 35158 36359 . - . ID=Physo134437;Parent=Physo134437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 35158 36189 . - 0 ID=Physo134437;Parent=Physo134437;rank=2 scaffold_32 . exon 35158 36189 . - . ID=Physo134437.2;Parent=Physo134437;constitutive=1;rank=2 scaffold_32 . CDS 36315 36359 . - 0 ID=Physo134437;Parent=Physo134437;rank=1 scaffold_32 . exon 36315 36359 . - . ID=Physo134437.1;Parent=Physo134437;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 36591 37482 . + . ID=Physo134438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320009;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 36591 37482 . + . ID=Physo134438;Parent=Physo134438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 36591 36768 . + 0 ID=Physo134438;Parent=Physo134438;rank=1 scaffold_32 . exon 36591 36768 . + . ID=Physo134438.1;Parent=Physo134438;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 36842 36996 . + 0 ID=Physo134438;Parent=Physo134438;rank=2 scaffold_32 . exon 36842 36996 . + . ID=Physo134438.2;Parent=Physo134438;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 37076 37222 . + 0 ID=Physo134438;Parent=Physo134438;rank=3 scaffold_32 . exon 37076 37222 . + . ID=Physo134438.3;Parent=Physo134438;constitutive=1;rank=3 scaffold_32 . CDS 37291 37482 . + 0 ID=Physo134438;Parent=Physo134438;rank=4 scaffold_32 . exon 37291 37482 . + . ID=Physo134438.4;Parent=Physo134438;constitutive=1;rank=4 scaffold_32 ensembl protein_coding_gene 39690 40579 . - . ID=Physo134439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320010;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 39690 40579 . - . ID=Physo134439;Parent=Physo134439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 39690 39703 . - 0 ID=Physo134439;Parent=Physo134439;rank=6 scaffold_32 . exon 39690 39703 . - . ID=Physo134439.6;Parent=Physo134439;constitutive=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 39766 39833 . - 0 ID=Physo134439;Parent=Physo134439;rank=5 scaffold_32 . exon 39766 39833 . - . ID=Physo134439.5;Parent=Physo134439;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_32 . CDS 39922 39997 . - 0 ID=Physo134439;Parent=Physo134439;rank=4 scaffold_32 . CDS 40075 40219 . - 0 ID=Physo134439;Parent=Physo134439;rank=3 scaffold_32 . CDS 40326 40432 . - 0 ID=Physo134439;Parent=Physo134439;rank=2 scaffold_32 . CDS 40513 40579 . - 0 ID=Physo134439;Parent=Physo134439;rank=1 scaffold_32 . exon 29928 30031 . + . ID=Physo156954.3;Parent=Physo156954;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . exon 30122 30365 . + . ID=Physo156954.4;Parent=Physo156954;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_32 . exon 30445 30660 . + . ID=Physo156954.5;Parent=Physo156954;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_32 . exon 30930 31219 . + . ID=Physo156954.6;Parent=Physo156954;constitutive=1;ensembl_phase=1;rank=6 scaffold_32 ensembl protein_coding_gene 31331 32217 . + . ID=Physo156956;biotype=protein_coding;external_name=C_scaffold_32000007;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 31331 32217 . + . ID=Physo156956;Parent=Physo156956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 31331 32084 . + 0 ID=Physo156956;Parent=Physo156956;rank=1 scaffold_32 . exon 31331 32084 . + . ID=Physo156956.1;Parent=Physo156956;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 32171 32217 . + 0 ID=Physo156956;Parent=Physo156956;rank=2 scaffold_32 . exon 32171 32217 . + . ID=Physo156956.2;Parent=Physo156956;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . biological_region 40317 40322 0.999 + . logic_name=eponine scaffold_32 . biological_region 41242 41249 0.999 - . logic_name=eponine scaffold_32 . biological_region 41268 41270 0.999 - . logic_name=eponine scaffold_32 . biological_region 41275 41280 0.999 - . logic_name=eponine scaffold_32 . biological_region 43805 43808 0.999 + . logic_name=eponine scaffold_32 . biological_region 49293 49298 0.999 + . logic_name=eponine scaffold_32 . exon 39922 39997 . - . ID=Physo134439.4;Parent=Physo134439;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_32 . exon 40075 40219 . - . ID=Physo134439.3;Parent=Physo134439;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . exon 40326 40432 . - . ID=Physo134439.2;Parent=Physo134439;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . exon 40513 40579 . - . ID=Physo134439.1;Parent=Physo134439;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 41129 42810 . + . ID=Physo134440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320011;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 41129 42810 . + . ID=Physo134440;Parent=Physo134440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 41129 42289 . + 0 ID=Physo134440;Parent=Physo134440;rank=1 scaffold_32 . exon 41129 42289 . + . ID=Physo134440.1;Parent=Physo134440;constitutive=1;rank=1 scaffold_32 . CDS 42359 42408 . + 0 ID=Physo134440;Parent=Physo134440;rank=2 scaffold_32 . exon 42359 42408 . + . ID=Physo134440.2;Parent=Physo134440;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 42483 42810 . + 0 ID=Physo134440;Parent=Physo134440;rank=3 scaffold_32 . exon 42483 42810 . + . ID=Physo134440.3;Parent=Physo134440;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 ensembl protein_coding_gene 42925 44601 . - . ID=Physo134441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320012;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 42925 44601 . - . ID=Physo134441;Parent=Physo134441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 42925 44601 . - . ID=Physo134441.1;Parent=Physo134441;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_32 . CDS 43012 44601 . - 0 ID=Physo134441;Parent=Physo134441;rank=1 scaffold_32 ensembl protein_coding_gene 44892 46510 . - . ID=Physo134442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320013;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 44892 46510 . - . ID=Physo134442;Parent=Physo134442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 44892 45479 . - 0 ID=Physo134442;Parent=Physo134442;rank=4 scaffold_32 . exon 44892 45479 . - . ID=Physo134442.4;Parent=Physo134442;constitutive=1;rank=4 scaffold_32 . CDS 45511 45566 . - 0 ID=Physo134442;Parent=Physo134442;rank=3 scaffold_32 . exon 45511 45566 . - . ID=Physo134442.3;Parent=Physo134442;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 45735 46389 . - 0 ID=Physo134442;Parent=Physo134442;rank=2 scaffold_32 . exon 45735 46389 . - . ID=Physo134442.2;Parent=Physo134442;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 46460 46510 . - 0 ID=Physo134442;Parent=Physo134442;rank=1 scaffold_32 . exon 46460 46510 . - . ID=Physo134442.1;Parent=Physo134442;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 47602 49102 . + . ID=Physo134443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320014;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 47602 49102 . + . ID=Physo134443;Parent=Physo134443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 47602 47655 . + 0 ID=Physo134443;Parent=Physo134443;rank=1 scaffold_32 . exon 47602 47655 . + . ID=Physo134443.1;Parent=Physo134443;constitutive=1;rank=1 scaffold_32 . CDS 47768 49102 . + 0 ID=Physo134443;Parent=Physo134443;rank=2 scaffold_32 . exon 47768 49102 . + . ID=Physo134443.2;Parent=Physo134443;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 49204 52269 . - . ID=Physo134444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320015;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 49204 52269 . - . ID=Physo134444;Parent=Physo134444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 49204 52269 . - 0 ID=Physo134444;Parent=Physo134444;rank=1 scaffold_32 . exon 49204 52269 . - . ID=Physo134444.1;Parent=Physo134444;constitutive=1;rank=1 scaffold_32 . repeat_region 49707 49752 . ? . description=trf scaffold_32 . repeat_region 56431 56456 . ? . description=dust scaffold_32 . repeat_region 56431 56456 . ? . description=trf scaffold_32 . repeat_region 57223 57246 . ? . description=dust scaffold_32 . repeat_region 57223 57246 . ? . description=trf scaffold_32 ensembl protein_coding_gene 52530 54038 . - . ID=Physo134445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320016;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 52530 54038 . - . ID=Physo134445;Parent=Physo134445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 52530 53537 . - 0 ID=Physo134445;Parent=Physo134445;rank=4 scaffold_32 . exon 52530 53537 . - . ID=Physo134445.4;Parent=Physo134445;constitutive=1;rank=4 scaffold_32 . CDS 53603 53695 . - 0 ID=Physo134445;Parent=Physo134445;rank=3 scaffold_32 . exon 53603 53695 . - . ID=Physo134445.3;Parent=Physo134445;constitutive=1;rank=3 scaffold_32 . CDS 53792 53811 . - 0 ID=Physo134445;Parent=Physo134445;rank=2 scaffold_32 . exon 53792 53811 . - . ID=Physo134445.2;Parent=Physo134445;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 53855 54038 . - 0 ID=Physo134445;Parent=Physo134445;rank=1 scaffold_32 . exon 53855 54038 . - . ID=Physo134445.1;Parent=Physo134445;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 54167 55155 . + . ID=Physo134446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320017;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 54167 55155 . + . ID=Physo134446;Parent=Physo134446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 54167 54240 . + . ID=Physo134446.1;Parent=Physo134446;constitutive=1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 54175 54240 . + 0 ID=Physo134446;Parent=Physo134446;rank=1 scaffold_32 . CDS 54316 54450 . + 0 ID=Physo134446;Parent=Physo134446;rank=2 scaffold_32 . exon 54316 54450 . + . ID=Physo134446.2;Parent=Physo134446;constitutive=1;rank=2 scaffold_32 . CDS 54565 55155 . + 0 ID=Physo134446;Parent=Physo134446;rank=3 scaffold_32 . exon 54565 55155 . + . ID=Physo134446.3;Parent=Physo134446;constitutive=1;rank=3 scaffold_32 ensembl protein_coding_gene 56639 57091 . + . ID=Physo134447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320018;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 56639 57091 . + . ID=Physo134447;Parent=Physo134447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 56639 57091 . + 0 ID=Physo134447;Parent=Physo134447;rank=1 scaffold_32 . exon 56639 57091 . + . ID=Physo134447.1;Parent=Physo134447;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 57216 58490 . + . ID=Physo134448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320019;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 57216 58490 . + . ID=Physo134448;Parent=Physo134448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 57216 58490 . + 0 ID=Physo134448;Parent=Physo134448;rank=1 scaffold_32 . exon 57216 58490 . + . ID=Physo134448.1;Parent=Physo134448;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 58537 63778 . - . ID=Physo156958;biotype=protein_coding;external_name=C_scaffold_32000009;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 58537 63778 . - . ID=Physo156958;Parent=Physo156958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 58537 58616 . - 0 ID=Physo156958;Parent=Physo156958;rank=13 scaffold_32 . exon 58537 58616 . - . ID=Physo156958.13;Parent=Physo156958;constitutive=1;ensembl_phase=1;rank=13 scaffold_32 . CDS 58677 58764 . - 0 ID=Physo156958;Parent=Physo156958;rank=12 scaffold_32 . exon 58677 58764 . - . ID=Physo156958.12;Parent=Physo156958;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_32 . CDS 58848 58940 . - 0 ID=Physo156958;Parent=Physo156958;rank=11 scaffold_32 . exon 58848 58940 . - . ID=Physo156958.11;Parent=Physo156958;constitutive=1;rank=11 scaffold_32 . CDS 59025 59671 . - 0 ID=Physo156958;Parent=Physo156958;rank=10 scaffold_32 . exon 59025 59671 . - . ID=Physo156958.10;Parent=Physo156958;constitutive=1;ensembl_phase=1;rank=10 scaffold_32 . CDS 60185 60532 . - 0 ID=Physo156958;Parent=Physo156958;rank=9 scaffold_32 . CDS 60623 61270 . - 0 ID=Physo156958;Parent=Physo156958;rank=8 scaffold_32 . CDS 61373 61561 . - 0 ID=Physo156958;Parent=Physo156958;rank=7 scaffold_32 . CDS 61654 62546 . - 0 ID=Physo156958;Parent=Physo156958;rank=6 scaffold_32 . CDS 62648 62953 . - 0 ID=Physo156958;Parent=Physo156958;rank=5 scaffold_32 . CDS 63046 63131 . - 0 ID=Physo156958;Parent=Physo156958;rank=4 scaffold_32 . CDS 63166 63167 . - 0 ID=Physo156958;Parent=Physo156958;rank=3 scaffold_32 . CDS 63499 63609 . - 0 ID=Physo156958;Parent=Physo156958;rank=2 scaffold_32 . CDS 63700 63778 . - 0 ID=Physo156958;Parent=Physo156958;rank=1 scaffold_32 . biological_region 62695 62700 0.999 - . logic_name=eponine scaffold_32 . biological_region 62906 62911 0.999 - . logic_name=eponine scaffold_32 . biological_region 63486 63487 0.999 + . logic_name=eponine scaffold_32 . biological_region 67307 67308 0.999 + . logic_name=eponine scaffold_32 . biological_region 67720 67724 0.999 + . logic_name=eponine scaffold_32 . biological_region 68116 68121 0.999 + . logic_name=eponine scaffold_32 . biological_region 68149 68153 0.999 + . logic_name=eponine scaffold_32 . biological_region 68244 68245 0.999 - . logic_name=eponine scaffold_32 . biological_region 68392 68396 0.999 + . logic_name=eponine scaffold_32 . biological_region 68885 68891 0.999 - . logic_name=eponine scaffold_32 . biological_region 69495 69499 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 65749 67853 . - . ID=Physo108790;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_320002;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 65749 67853 . - . ID=Physo108790;Parent=Physo108790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 65749 65853 . - . ID=Physo108790.7;Parent=Physo108790;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_32 . CDS 65851 65853 . - 0 ID=Physo108790;Parent=Physo108790;rank=7 scaffold_32 . CDS 65928 66209 . - 0 ID=Physo108790;Parent=Physo108790;rank=6 scaffold_32 . exon 65928 66209 . - . ID=Physo108790.6;Parent=Physo108790;constitutive=1;rank=6 scaffold_32 . CDS 66285 66422 . - 0 ID=Physo108790;Parent=Physo108790;rank=5 scaffold_32 . exon 66285 66422 . - . ID=Physo108790.5;Parent=Physo108790;constitutive=1;rank=5 scaffold_32 . CDS 66497 67018 . - 0 ID=Physo108790;Parent=Physo108790;rank=4 scaffold_32 . exon 66497 67018 . - . ID=Physo108790.4;Parent=Physo108790;constitutive=1;rank=4 scaffold_32 . CDS 67094 67504 . - 0 ID=Physo108790;Parent=Physo108790;rank=3 scaffold_32 . exon 67094 67504 . - . ID=Physo108790.3;Parent=Physo108790;constitutive=1;rank=3 scaffold_32 . CDS 67608 67663 . - 0 ID=Physo108790;Parent=Physo108790;rank=2 scaffold_32 . exon 67608 67663 . - . ID=Physo108790.2;Parent=Physo108790;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 67744 67819 . - 0 ID=Physo108790;Parent=Physo108790;rank=1 scaffold_32 . exon 67744 67853 . - . ID=Physo108790.1;Parent=Physo108790;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_32 ensembl protein_coding_gene 68059 69123 . - . ID=Physo134452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320023;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 68059 69123 . - . ID=Physo134452;Parent=Physo134452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 68059 68517 . - . ID=Physo134452.4;Parent=Physo134452;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_32 . CDS 68133 68517 . - 0 ID=Physo134452;Parent=Physo134452;rank=4 scaffold_32 . CDS 68633 68752 . - 0 ID=Physo134452;Parent=Physo134452;rank=3 scaffold_32 . exon 68633 68752 . - . ID=Physo134452.3;Parent=Physo134452;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_32 . CDS 68838 68980 . - 0 ID=Physo134452;Parent=Physo134452;rank=2 scaffold_32 . exon 68838 68980 . - . ID=Physo134452.2;Parent=Physo134452;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 69067 69123 . - 0 ID=Physo134452;Parent=Physo134452;rank=1 scaffold_32 . exon 69067 69123 . - . ID=Physo134452.1;Parent=Physo134452;constitutive=1;rank=1 scaffold_32 . exon 60185 60532 . - . ID=Physo156958.9;Parent=Physo156958;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_32 . exon 60623 61270 . - . ID=Physo156958.8;Parent=Physo156958;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_32 . exon 61373 61561 . - . ID=Physo156958.7;Parent=Physo156958;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_32 . exon 61654 62546 . - . ID=Physo156958.6;Parent=Physo156958;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_32 . exon 62648 62953 . - . ID=Physo156958.5;Parent=Physo156958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_32 . exon 63046 63131 . - . ID=Physo156958.4;Parent=Physo156958;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_32 . exon 63166 63167 . - . ID=Physo156958.3;Parent=Physo156958;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . exon 63499 63609 . - . ID=Physo156958.2;Parent=Physo156958;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_32 . exon 63700 63778 . - . ID=Physo156958.1;Parent=Physo156958;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . repeat_region 72544 72563 . ? . description=dust scaffold_32 . repeat_region 72544 72563 . ? . description=trf scaffold_32 . repeat_region 74320 74339 . ? . description=dust scaffold_32 . repeat_region 74320 74344 . ? . description=trf scaffold_32 . repeat_region 79069 79115 . ? . description=dust scaffold_32 . repeat_region 79336 79375 . ? . description=trf scaffold_32 ensembl protein_coding_gene 71868 72381 . - . ID=Physo116298;biotype=protein_coding;external_name=estExt_Genewise1.C_320079;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 71868 72381 . - . ID=Physo116298;Parent=Physo116298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 71868 72190 . - . ID=Physo116298.2;Parent=Physo116298;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_32 . CDS 71870 72190 . - 0 ID=Physo116298;Parent=Physo116298;rank=2 scaffold_32 . CDS 72280 72369 . - 0 ID=Physo116298;Parent=Physo116298;rank=1 scaffold_32 . exon 72280 72381 . - . ID=Physo116298.1;Parent=Physo116298;constitutive=1;ensembl_phase=-1;rank=1 scaffold_32 ensembl protein_coding_gene 70050 71510 . + . ID=Physo134453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320024;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 70050 71510 . + . ID=Physo134453;Parent=Physo134453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 70050 71222 . + 0 ID=Physo134453;Parent=Physo134453;rank=1 scaffold_32 . exon 70050 71510 . + . ID=Physo134453.1;Parent=Physo134453;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_32 ensembl protein_coding_gene 72837 74298 . - . ID=Physo134455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320026;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 72837 74298 . - . ID=Physo134455;Parent=Physo134455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 72837 72915 . - 0 ID=Physo134455;Parent=Physo134455;rank=7 scaffold_32 . exon 72837 72915 . - . ID=Physo134455.7;Parent=Physo134455;constitutive=1;ensembl_phase=2;rank=7 scaffold_32 . CDS 72981 73203 . - 0 ID=Physo134455;Parent=Physo134455;rank=6 scaffold_32 . exon 72981 73203 . - . ID=Physo134455.6;Parent=Physo134455;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_32 . CDS 73284 73437 . - 0 ID=Physo134455;Parent=Physo134455;rank=5 scaffold_32 . exon 73284 73437 . - . ID=Physo134455.5;Parent=Physo134455;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_32 . CDS 73495 73615 . - 0 ID=Physo134455;Parent=Physo134455;rank=4 scaffold_32 . exon 73495 73615 . - . ID=Physo134455.4;Parent=Physo134455;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 73697 73734 . - 0 ID=Physo134455;Parent=Physo134455;rank=3 scaffold_32 . exon 73697 73734 . - . ID=Physo134455.3;Parent=Physo134455;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_32 . CDS 73810 74062 . - 0 ID=Physo134455;Parent=Physo134455;rank=2 scaffold_32 . exon 73810 74062 . - . ID=Physo134455.2;Parent=Physo134455;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 74138 74298 . - 0 ID=Physo134455;Parent=Physo134455;rank=1 scaffold_32 . exon 74138 74298 . - . ID=Physo134455.1;Parent=Physo134455;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 75543 79214 . - . ID=Physo134456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320027;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 75543 79214 . - . ID=Physo134456;Parent=Physo134456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 75543 79214 . - 0 ID=Physo134456;Parent=Physo134456;rank=1 scaffold_32 . exon 75543 79214 . - . ID=Physo134456.1;Parent=Physo134456;constitutive=1;rank=1 scaffold_32 . biological_region 84529 84534 0.999 - . logic_name=eponine scaffold_32 . biological_region 84571 84574 0.999 + . logic_name=eponine scaffold_32 . biological_region 84931 84932 0.999 + . logic_name=eponine scaffold_32 . repeat_region 85599 86547 . + . description=GypsyPi-1c_I-int scaffold_32 . biological_region 85818 85821 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 83178 86571 . + . ID=Physo134457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320028;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 83178 86571 . + . ID=Physo134457;Parent=Physo134457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 83178 83679 . + 0 ID=Physo134457;Parent=Physo134457;rank=1 scaffold_32 . exon 83178 83679 . + . ID=Physo134457.1;Parent=Physo134457;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 84270 84524 . + 0 ID=Physo134457;Parent=Physo134457;rank=2 scaffold_32 . exon 84270 84524 . + . ID=Physo134457.2;Parent=Physo134457;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 84683 86022 . + 0 ID=Physo134457;Parent=Physo134457;rank=3 scaffold_32 . exon 84683 86022 . + . ID=Physo134457.3;Parent=Physo134457;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 86071 86571 . + 0 ID=Physo134457;Parent=Physo134457;rank=4 scaffold_32 . exon 86071 86571 . + . ID=Physo134457.4;Parent=Physo134457;constitutive=1;rank=4 scaffold_32 ensembl protein_coding_gene 87508 92774 . + . ID=Physo134458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320029;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 87508 92774 . + . ID=Physo134458;Parent=Physo134458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 87508 88051 . + 0 ID=Physo134458;Parent=Physo134458;rank=1 scaffold_32 . exon 87508 88051 . + . ID=Physo134458.1;Parent=Physo134458;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 88094 88429 . + 0 ID=Physo134458;Parent=Physo134458;rank=2 scaffold_32 . exon 88094 88429 . + . ID=Physo134458.2;Parent=Physo134458;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 89011 89760 . + 0 ID=Physo134458;Parent=Physo134458;rank=3 scaffold_32 . exon 89011 89760 . + . ID=Physo134458.3;Parent=Physo134458;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 89988 90203 . + 0 ID=Physo134458;Parent=Physo134458;rank=4 scaffold_32 . CDS 90279 90697 . + 0 ID=Physo134458;Parent=Physo134458;rank=5 scaffold_32 . CDS 90731 92671 . + 0 ID=Physo134458;Parent=Physo134458;rank=6 scaffold_32 . CDS 92757 92774 . + 0 ID=Physo134458;Parent=Physo134458;rank=7 scaffold_32 . repeat_region 99339 99376 . ? . description=trf scaffold_32 . exon 89988 90203 . + . ID=Physo134458.4;Parent=Physo134458;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_32 . exon 90279 90697 . + . ID=Physo134458.5;Parent=Physo134458;constitutive=1;ensembl_phase=1;rank=5 scaffold_32 . exon 90731 92671 . + . ID=Physo134458.6;Parent=Physo134458;constitutive=1;rank=6 scaffold_32 . exon 92757 92774 . + . ID=Physo134458.7;Parent=Physo134458;constitutive=1;rank=7 scaffold_32 ensembl protein_coding_gene 96175 96678 . - . ID=Physo134459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320030;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 96175 96678 . - . ID=Physo134459;Parent=Physo134459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 96175 96678 . - 0 ID=Physo134459;Parent=Physo134459;rank=1 scaffold_32 . exon 96175 96678 . - . ID=Physo134459.1;Parent=Physo134459;constitutive=1;rank=1 scaffold_32 . repeat_region 99639 99646 . ? . description=dust scaffold_32 . repeat_region 99708 101124 . + . description=GypsyPi-1c_I-int scaffold_32 . biological_region 102233 102233 0.999 + . logic_name=eponine scaffold_32 . biological_region 102284 102289 0.999 - . logic_name=eponine scaffold_32 . biological_region 102823 102829 0.999 + . logic_name=eponine scaffold_32 . biological_region 102852 102853 0.999 + . logic_name=eponine scaffold_32 . biological_region 102923 102925 0.999 - . logic_name=eponine scaffold_32 . biological_region 102941 102945 0.999 - . logic_name=eponine scaffold_32 . repeat_region 104508 104516 . ? . description=dust scaffold_32 . repeat_region 105008 105662 . + . description=Polinton-1_PI scaffold_32 . repeat_region 105688 106590 . + . description=Polinton-1_PI scaffold_32 . repeat_region 108010 108081 . + . description=Polinton-1_PI scaffold_32 . repeat_region 108095 108517 . + . description=Polinton-1_PI scaffold_32 . biological_region 108570 108572 0.999 + . logic_name=eponine scaffold_32 . biological_region 108593 108601 0.999 + . logic_name=eponine scaffold_32 . biological_region 108601 108603 0.999 - . logic_name=eponine scaffold_32 . biological_region 108722 108726 0.999 - . logic_name=eponine scaffold_32 . biological_region 109224 109226 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 100016 101273 . + . ID=Physo134460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320031;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 100016 101273 . + . ID=Physo134460;Parent=Physo134460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 100016 100537 . + 0 ID=Physo134460;Parent=Physo134460;rank=1 scaffold_32 . exon 100016 100537 . + . ID=Physo134460.1;Parent=Physo134460;constitutive=1;rank=1 scaffold_32 . CDS 100607 100705 . + 0 ID=Physo134460;Parent=Physo134460;rank=2 scaffold_32 . exon 100607 100705 . + . ID=Physo134460.2;Parent=Physo134460;constitutive=1;rank=2 scaffold_32 . CDS 100902 101273 . + 0 ID=Physo134460;Parent=Physo134460;rank=3 scaffold_32 . exon 100902 101273 . + . ID=Physo134460.3;Parent=Physo134460;constitutive=1;rank=3 scaffold_32 ensembl protein_coding_gene 101686 102456 . - . ID=Physo134461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320032;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 101686 102456 . - . ID=Physo134461;Parent=Physo134461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 101686 102456 . - 0 ID=Physo134461;Parent=Physo134461;rank=1 scaffold_32 . exon 101686 102456 . - . ID=Physo134461.1;Parent=Physo134461;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 102776 103210 . - . ID=Physo134462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320033;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 102776 103210 . - . ID=Physo134462;Parent=Physo134462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 102776 103210 . - 0 ID=Physo134462;Parent=Physo134462;rank=1 scaffold_32 . exon 102776 103210 . - . ID=Physo134462.1;Parent=Physo134462;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 104837 105712 . + . ID=Physo134463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320034;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 104837 105712 . + . ID=Physo134463;Parent=Physo134463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 104837 105712 . + 0 ID=Physo134463;Parent=Physo134463;rank=1 scaffold_32 . exon 104837 105712 . + . ID=Physo134463.1;Parent=Physo134463;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 108513 110689 . + . ID=Physo134464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320035;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 108513 110689 . + . ID=Physo134464;Parent=Physo134464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 108513 108669 . + 0 ID=Physo134464;Parent=Physo134464;rank=1 scaffold_32 . exon 108513 108669 . + . ID=Physo134464.1;Parent=Physo134464;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 109685 110147 . + 0 ID=Physo134464;Parent=Physo134464;rank=2 scaffold_32 . CDS 110177 110612 . + 0 ID=Physo134464;Parent=Physo134464;rank=3 scaffold_32 . CDS 110660 110689 . + 0 ID=Physo134464;Parent=Physo134464;rank=4 scaffold_32 . repeat_region 110262 110315 . ? . description=trf scaffold_32 . repeat_region 112006 112025 . ? . description=trf scaffold_32 . repeat_region 114895 114950 . ? . description=trf scaffold_32 . exon 109685 110147 . + . ID=Physo134464.2;Parent=Physo134464;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . exon 110177 110612 . + . ID=Physo134464.3;Parent=Physo134464;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . exon 110660 110689 . + . ID=Physo134464.4;Parent=Physo134464;constitutive=1;rank=4 scaffold_32 ensembl protein_coding_gene 111410 113088 . - . ID=Physo134465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320036;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 111410 113088 . - . ID=Physo134465;Parent=Physo134465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 111410 111598 . - 0 ID=Physo134465;Parent=Physo134465;rank=3 scaffold_32 . exon 111410 111598 . - . ID=Physo134465.3;Parent=Physo134465;constitutive=1;rank=3 scaffold_32 . CDS 111973 112178 . - 0 ID=Physo134465;Parent=Physo134465;rank=2 scaffold_32 . exon 111973 112178 . - . ID=Physo134465.2;Parent=Physo134465;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 112239 113088 . - 0 ID=Physo134465;Parent=Physo134465;rank=1 scaffold_32 . exon 112239 113088 . - . ID=Physo134465.1;Parent=Physo134465;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 113499 116713 . + . ID=Physo134466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320037;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 113499 116713 . + . ID=Physo134466;Parent=Physo134466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 113499 113687 . + 0 ID=Physo134466;Parent=Physo134466;rank=1 scaffold_32 . exon 113499 113687 . + . ID=Physo134466.1;Parent=Physo134466;constitutive=1;rank=1 scaffold_32 . CDS 113883 114293 . + 0 ID=Physo134466;Parent=Physo134466;rank=2 scaffold_32 . exon 113883 114293 . + . ID=Physo134466.2;Parent=Physo134466;constitutive=1;rank=2 scaffold_32 . CDS 114325 114890 . + 0 ID=Physo134466;Parent=Physo134466;rank=3 scaffold_32 . exon 114325 114890 . + . ID=Physo134466.3;Parent=Physo134466;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_32 . CDS 115060 115141 . + 0 ID=Physo134466;Parent=Physo134466;rank=4 scaffold_32 . exon 115060 115141 . + . ID=Physo134466.4;Parent=Physo134466;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 115166 116713 . + 0 ID=Physo134466;Parent=Physo134466;rank=5 scaffold_32 . exon 115166 116713 . + . ID=Physo134466.5;Parent=Physo134466;constitutive=1;rank=5 scaffold_32 . repeat_region 119613 119662 . ? . description=dust scaffold_32 . biological_region 119697 119701 0.999 + . logic_name=eponine scaffold_32 . biological_region 119752 119752 0.999 + . logic_name=eponine scaffold_32 . biological_region 119756 119758 0.999 + . logic_name=eponine scaffold_32 . biological_region 119778 119782 0.999 + . logic_name=eponine scaffold_32 . biological_region 119797 119797 0.999 - . logic_name=eponine scaffold_32 . biological_region 119817 119822 0.999 - . logic_name=eponine scaffold_32 . biological_region 119831 119835 0.999 + . logic_name=eponine scaffold_32 . biological_region 119938 119942 0.999 - . logic_name=eponine scaffold_32 . biological_region 120019 120023 0.999 + . logic_name=eponine scaffold_32 . biological_region 120139 120145 0.999 - . logic_name=eponine scaffold_32 . biological_region 120177 120178 0.999 - . logic_name=eponine scaffold_32 . biological_region 120207 120210 0.999 - . logic_name=eponine scaffold_32 . biological_region 120265 120269 0.999 + . logic_name=eponine scaffold_32 . biological_region 120603 120610 0.999 + . logic_name=eponine scaffold_32 . biological_region 120677 120681 0.999 - . logic_name=eponine scaffold_32 . biological_region 120848 120850 0.999 + . logic_name=eponine scaffold_32 . biological_region 121017 121022 0.999 - . logic_name=eponine scaffold_32 . biological_region 121218 121222 0.999 + . logic_name=eponine scaffold_32 . biological_region 121350 121352 0.999 + . logic_name=eponine scaffold_32 . biological_region 121454 121456 0.999 + . logic_name=eponine scaffold_32 . biological_region 121493 121499 0.999 + . logic_name=eponine scaffold_32 . biological_region 121500 121503 0.999 - . logic_name=eponine scaffold_32 . biological_region 121622 121624 0.999 - . logic_name=eponine scaffold_32 . biological_region 121644 121649 0.999 + . logic_name=eponine scaffold_32 . biological_region 121680 121683 0.999 + . logic_name=eponine scaffold_32 . biological_region 121714 121720 0.999 - . logic_name=eponine scaffold_32 . repeat_region 121983 121990 . ? . description=dust scaffold_32 . repeat_region 122013 122027 . ? . description=dust scaffold_32 . biological_region 122150 122150 0.999 + . logic_name=eponine scaffold_32 . biological_region 122165 122167 0.999 - . logic_name=eponine scaffold_32 . biological_region 122220 122223 0.999 + . logic_name=eponine scaffold_32 . biological_region 122255 122260 0.999 - . logic_name=eponine scaffold_32 . biological_region 122306 122309 0.999 - . logic_name=eponine scaffold_32 . repeat_region 122343 122350 . ? . description=dust scaffold_32 . biological_region 123758 123762 0.999 - . logic_name=eponine scaffold_32 . repeat_region 123903 123953 . ? . description=dust scaffold_32 . biological_region 123910 123914 0.999 + . logic_name=eponine scaffold_32 . repeat_region 124246 124260 . ? . description=dust scaffold_32 . biological_region 125297 125303 0.999 - . logic_name=eponine scaffold_32 . biological_region 125681 125685 0.999 - . logic_name=eponine scaffold_32 . biological_region 127141 127144 0.999 + . logic_name=eponine scaffold_32 . repeat_region 128100 128161 . ? . description=dust scaffold_32 . biological_region 129244 129246 0.999 - . logic_name=eponine scaffold_32 ensembl pseudogene 128004 129693 . - . ID=Physo108791;biotype=pseudogene;external_name=estExt_fgenesh1_pm.C_320003;logic_name=jgi_physo1_1 scaffold_32 ensembl pseudogene 128004 129693 . - . ID=Physo108791;Parent=Physo108791;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_32 . exon 128004 129693 . - . ID=Physo108791.1;Parent=Physo108791;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_32 ensembl protein_coding_gene 119497 121286 . - . ID=Physo134467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320038;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 119497 121286 . - . ID=Physo134467;Parent=Physo134467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 119497 119532 . - 0 ID=Physo134467;Parent=Physo134467;rank=4 scaffold_32 . exon 119497 119532 . - . ID=Physo134467.4;Parent=Physo134467;constitutive=1;rank=4 scaffold_32 . CDS 119724 120104 . - 0 ID=Physo134467;Parent=Physo134467;rank=3 scaffold_32 . exon 119724 120104 . - . ID=Physo134467.3;Parent=Physo134467;constitutive=1;rank=3 scaffold_32 . CDS 120126 120956 . - 0 ID=Physo134467;Parent=Physo134467;rank=2 scaffold_32 . exon 120126 120956 . - . ID=Physo134467.2;Parent=Physo134467;constitutive=1;rank=2 scaffold_32 . CDS 121197 121286 . - 0 ID=Physo134467;Parent=Physo134467;rank=1 scaffold_32 . exon 121197 121286 . - . ID=Physo134467.1;Parent=Physo134467;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 123954 125288 . + . ID=Physo134468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320039;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 123954 125288 . + . ID=Physo134468;Parent=Physo134468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 123954 124191 . + 0 ID=Physo134468;Parent=Physo134468;rank=1 scaffold_32 . exon 123954 124191 . + . ID=Physo134468.1;Parent=Physo134468;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 124285 125288 . + 0 ID=Physo134468;Parent=Physo134468;rank=2 scaffold_32 . exon 124285 125288 . + . ID=Physo134468.2;Parent=Physo134468;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 ensembl protein_coding_gene 125632 126231 . - . ID=Physo134469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320040;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 125632 126231 . - . ID=Physo134469;Parent=Physo134469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 125632 125912 . - 0 ID=Physo134469;Parent=Physo134469;rank=2 scaffold_32 . exon 125632 125912 . - . ID=Physo134469.2;Parent=Physo134469;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 126072 126231 . - 0 ID=Physo134469;Parent=Physo134469;rank=1 scaffold_32 . exon 126072 126231 . - . ID=Physo134469.1;Parent=Physo134469;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . repeat_region 133539 133567 . ? . description=trf scaffold_32 ensembl protein_coding_gene 129985 131217 . + . ID=Physo134471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320042;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 129985 131217 . + . ID=Physo134471;Parent=Physo134471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 129985 130001 . + 0 ID=Physo134471;Parent=Physo134471;rank=1 scaffold_32 . exon 129985 130001 . + . ID=Physo134471.1;Parent=Physo134471;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 130306 130684 . + 0 ID=Physo134471;Parent=Physo134471;rank=2 scaffold_32 . exon 130306 130684 . + . ID=Physo134471.2;Parent=Physo134471;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 130748 131125 . + 0 ID=Physo134471;Parent=Physo134471;rank=3 scaffold_32 . exon 130748 131217 . + . ID=Physo134471.3;Parent=Physo134471;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_32 ensembl protein_coding_gene 133681 135219 . - . ID=Physo134472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320043;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 133681 135219 . - . ID=Physo134472;Parent=Physo134472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 133681 133878 . - . ID=Physo134472.7;Parent=Physo134472;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_32 . CDS 133773 133878 . - 0 ID=Physo134472;Parent=Physo134472;rank=7 scaffold_32 . CDS 133947 134011 . - 0 ID=Physo134472;Parent=Physo134472;rank=6 scaffold_32 . exon 133947 134011 . - . ID=Physo134472.6;Parent=Physo134472;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_32 . CDS 134087 134251 . - 0 ID=Physo134472;Parent=Physo134472;rank=5 scaffold_32 . exon 134087 134251 . - . ID=Physo134472.5;Parent=Physo134472;constitutive=1;rank=5 scaffold_32 . CDS 134320 134441 . - 0 ID=Physo134472;Parent=Physo134472;rank=4 scaffold_32 . exon 134320 134441 . - . ID=Physo134472.4;Parent=Physo134472;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 134519 134593 . - 0 ID=Physo134472;Parent=Physo134472;rank=3 scaffold_32 . exon 134519 134593 . - . ID=Physo134472.3;Parent=Physo134472;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 134662 135042 . - 0 ID=Physo134472;Parent=Physo134472;rank=2 scaffold_32 . exon 134662 135042 . - . ID=Physo134472.2;Parent=Physo134472;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 135129 135219 . - 0 ID=Physo134472;Parent=Physo134472;rank=1 scaffold_32 . exon 135129 135219 . - . ID=Physo134472.1;Parent=Physo134472;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 136841 139105 . + . ID=Physo134473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320044;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 136841 139105 . + . ID=Physo134473;Parent=Physo134473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 136841 139105 . + 0 ID=Physo134473;Parent=Physo134473;rank=1 scaffold_32 . exon 136841 139105 . + . ID=Physo134473.1;Parent=Physo134473;constitutive=1;rank=1 scaffold_32 . repeat_region 140587 140625 . ? . description=dust scaffold_32 . biological_region 146418 146423 0.999 + . logic_name=eponine scaffold_32 . biological_region 148608 148609 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 139932 152925 . + . ID=Physo134474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320045;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 139932 152925 . + . ID=Physo134474;Parent=Physo134474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 139932 140572 . + 0 ID=Physo134474;Parent=Physo134474;rank=1 scaffold_32 . exon 139932 140572 . + . ID=Physo134474.1;Parent=Physo134474;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 140683 140754 . + 0 ID=Physo134474;Parent=Physo134474;rank=2 scaffold_32 . exon 140683 140754 . + . ID=Physo134474.2;Parent=Physo134474;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_32 . CDS 140840 147123 . + 0 ID=Physo134474;Parent=Physo134474;rank=3 scaffold_32 . exon 140840 147123 . + . ID=Physo134474.3;Parent=Physo134474;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 147223 152863 . + 0 ID=Physo134474;Parent=Physo134474;rank=4 scaffold_32 . exon 147223 152863 . + . ID=Physo134474.4;Parent=Physo134474;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_32 . CDS 152889 152925 . + 0 ID=Physo134474;Parent=Physo134474;rank=5 scaffold_32 . repeat_region 150225 150303 . ? . description=trf scaffold_32 . exon 152889 152925 . + . ID=Physo134474.5;Parent=Physo134474;constitutive=1;ensembl_phase=2;rank=5 scaffold_32 ensembl protein_coding_gene 153079 154828 . - . ID=Physo134475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320046;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 153079 154828 . - . ID=Physo134475;Parent=Physo134475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 153079 154229 . - . ID=Physo134475.2;Parent=Physo134475;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_32 . CDS 153111 154229 . - 0 ID=Physo134475;Parent=Physo134475;rank=2 scaffold_32 . CDS 154301 154828 . - 0 ID=Physo134475;Parent=Physo134475;rank=1 scaffold_32 . exon 154301 154828 . - . ID=Physo134475.1;Parent=Physo134475;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 158976 159401 . + . ID=Physo134477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320048;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 158976 159401 . + . ID=Physo134477;Parent=Physo134477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 158976 159401 . + 0 ID=Physo134477;Parent=Physo134477;rank=1 scaffold_32 . exon 158976 159401 . + . ID=Physo134477.1;Parent=Physo134477;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 157050 158243 . + . ID=Physo156964;biotype=protein_coding;external_name=C_scaffold_32000015;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 157050 158243 . + . ID=Physo156964;Parent=Physo156964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 157050 158243 . + 0 ID=Physo156964;Parent=Physo156964;rank=1 scaffold_32 . exon 157050 158243 . + . ID=Physo156964.1;Parent=Physo156964;constitutive=1;rank=1 scaffold_32 . biological_region 159756 159761 0.999 + . logic_name=eponine scaffold_32 . biological_region 159803 159807 0.999 + . logic_name=eponine scaffold_32 . biological_region 160593 160595 0.999 + . logic_name=eponine scaffold_32 . biological_region 160608 160614 0.999 - . logic_name=eponine scaffold_32 . biological_region 160621 160625 0.999 + . logic_name=eponine scaffold_32 . biological_region 160677 160681 0.999 - . logic_name=eponine scaffold_32 . biological_region 160863 160866 0.999 - . logic_name=eponine scaffold_32 . biological_region 161652 161653 0.999 + . logic_name=eponine scaffold_32 . repeat_region 161798 161835 . ? . description=dust scaffold_32 . biological_region 162184 162186 0.999 + . logic_name=eponine scaffold_32 . repeat_region 162950 162971 . ? . description=dust scaffold_32 . biological_region 163287 163291 0.999 + . logic_name=eponine scaffold_32 . biological_region 163446 163450 0.999 - . logic_name=eponine scaffold_32 . biological_region 166251 166255 0.999 + . logic_name=eponine scaffold_32 . biological_region 166308 166312 0.999 + . logic_name=eponine scaffold_32 . biological_region 166319 166325 0.999 - . logic_name=eponine scaffold_32 . biological_region 166354 166359 0.999 + . logic_name=eponine scaffold_32 . biological_region 166401 166405 0.999 - . logic_name=eponine scaffold_32 . biological_region 166459 166463 0.999 - . logic_name=eponine scaffold_32 . biological_region 166655 166657 0.999 + . logic_name=eponine scaffold_32 . biological_region 166704 166711 0.999 - . logic_name=eponine scaffold_32 . biological_region 166708 166711 0.999 + . logic_name=eponine scaffold_32 . biological_region 166760 166765 0.999 + . logic_name=eponine scaffold_32 . biological_region 166864 166868 0.999 + . logic_name=eponine scaffold_32 . biological_region 167905 167911 0.999 + . logic_name=eponine scaffold_32 . biological_region 168998 169000 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 160409 161442 . + . ID=Physo134478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320049;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 160409 161442 . + . ID=Physo134478;Parent=Physo134478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 160409 161287 . + 0 ID=Physo134478;Parent=Physo134478;rank=1 scaffold_32 . exon 160409 161442 . + . ID=Physo134478.1;Parent=Physo134478;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_32 ensembl protein_coding_gene 161700 163084 . + . ID=Physo134479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320050;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 161700 163084 . + . ID=Physo134479;Parent=Physo134479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 161700 162936 . + 0 ID=Physo134479;Parent=Physo134479;rank=1 scaffold_32 . exon 161700 162936 . + . ID=Physo134479.1;Parent=Physo134479;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 163041 163084 . + 0 ID=Physo134479;Parent=Physo134479;rank=2 scaffold_32 . exon 163041 163084 . + . ID=Physo134479.2;Parent=Physo134479;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 ensembl protein_coding_gene 163204 166463 . - . ID=Physo134480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320051;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 163204 166463 . - . ID=Physo134480;Parent=Physo134480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 163204 165363 . - . ID=Physo134480.2;Parent=Physo134480;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_32 . CDS 163337 165363 . - 0 ID=Physo134480;Parent=Physo134480;rank=2 scaffold_32 . CDS 165608 166463 . - 0 ID=Physo134480;Parent=Physo134480;rank=1 scaffold_32 . exon 165608 166463 . - . ID=Physo134480.1;Parent=Physo134480;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 167848 170175 . - . ID=Physo134481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320052;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 167848 170175 . - . ID=Physo134481;Parent=Physo134481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 167848 170175 . - 0 ID=Physo134481;Parent=Physo134481;rank=1 scaffold_32 . exon 167848 170175 . - . ID=Physo134481.1;Parent=Physo134481;constitutive=1;rank=1 scaffold_32 . repeat_region 172812 173023 . ? . description=trf scaffold_32 . repeat_region 172888 172984 . ? . description=trf scaffold_32 . repeat_region 172954 173030 . ? . description=trf scaffold_32 ensembl protein_coding_gene 171087 172100 . + . ID=Physo134482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320053;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 171087 172100 . + . ID=Physo134482;Parent=Physo134482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 171087 172100 . + 0 ID=Physo134482;Parent=Physo134482;rank=1 scaffold_32 . exon 171087 172100 . + . ID=Physo134482.1;Parent=Physo134482;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 172299 173627 . - . ID=Physo134483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320054;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 172299 173627 . - . ID=Physo134483;Parent=Physo134483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 172299 173627 . - 0 ID=Physo134483;Parent=Physo134483;rank=1 scaffold_32 . exon 172299 173627 . - . ID=Physo134483.1;Parent=Physo134483;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 176743 178137 . + . ID=Physo134484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320055;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 176743 178137 . + . ID=Physo134484;Parent=Physo134484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 176743 178137 . + 0 ID=Physo134484;Parent=Physo134484;rank=1 scaffold_32 . exon 176743 178137 . + . ID=Physo134484.1;Parent=Physo134484;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 178333 183745 . + . ID=Physo134485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320056;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 178333 183745 . + . ID=Physo134485;Parent=Physo134485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 178333 179756 . + 0 ID=Physo134485;Parent=Physo134485;rank=1 scaffold_32 . exon 178333 179756 . + . ID=Physo134485.1;Parent=Physo134485;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 180008 181521 . + 0 ID=Physo134485;Parent=Physo134485;rank=2 scaffold_32 . CDS 181653 181833 . + 0 ID=Physo134485;Parent=Physo134485;rank=3 scaffold_32 . CDS 182062 182314 . + 0 ID=Physo134485;Parent=Physo134485;rank=4 scaffold_32 . CDS 182356 183498 . + 0 ID=Physo134485;Parent=Physo134485;rank=5 scaffold_32 . repeat_region 180056 180095 . ? . description=dust scaffold_32 . biological_region 180061 180068 0.999 + . logic_name=eponine scaffold_32 . biological_region 180271 180274 0.999 - . logic_name=eponine scaffold_32 . biological_region 180394 180398 0.999 + . logic_name=eponine scaffold_32 . repeat_region 180410 180464 . ? . description=dust scaffold_32 . biological_region 180410 180414 0.999 + . logic_name=eponine scaffold_32 . biological_region 180433 180442 0.999 + . logic_name=eponine scaffold_32 . biological_region 180645 180648 0.999 + . logic_name=eponine scaffold_32 . biological_region 180719 180721 0.999 + . logic_name=eponine scaffold_32 . biological_region 180782 180786 0.999 - . logic_name=eponine scaffold_32 . biological_region 181123 181123 0.999 - . logic_name=eponine scaffold_32 . biological_region 181763 181765 0.999 + . logic_name=eponine scaffold_32 . biological_region 182527 182529 0.999 - . logic_name=eponine scaffold_32 . repeat_region 184020 184056 . ? . description=dust scaffold_32 . repeat_region 184226 184235 . ? . description=dust scaffold_32 . biological_region 186881 186881 0.999 - . logic_name=eponine scaffold_32 . biological_region 186884 186887 0.999 + . logic_name=eponine scaffold_32 . biological_region 187006 187013 0.999 - . logic_name=eponine scaffold_32 . biological_region 187025 187028 0.999 - . logic_name=eponine scaffold_32 . biological_region 187054 187055 0.999 - . logic_name=eponine scaffold_32 . biological_region 187723 187725 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 184106 186369 . - . ID=Physo108792;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_320004;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 184106 186369 . - . ID=Physo108792;Parent=Physo108792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 184106 184126 . - 0 ID=Physo108792;Parent=Physo108792;rank=7 scaffold_32 . exon 184106 184126 . - . ID=Physo108792.7;Parent=Physo108792;constitutive=1;rank=7 scaffold_32 . CDS 184148 184202 . - 0 ID=Physo108792;Parent=Physo108792;rank=6 scaffold_32 . exon 184148 184202 . - . ID=Physo108792.6;Parent=Physo108792;constitutive=1;ensembl_phase=2;rank=6 scaffold_32 . CDS 184514 184662 . - 0 ID=Physo108792;Parent=Physo108792;rank=5 scaffold_32 . exon 184514 184662 . - . ID=Physo108792.5;Parent=Physo108792;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_32 . CDS 184780 185865 . - 0 ID=Physo108792;Parent=Physo108792;rank=4 scaffold_32 . exon 184780 185865 . - . ID=Physo108792.4;Parent=Physo108792;constitutive=1;rank=4 scaffold_32 . CDS 185971 186039 . - 0 ID=Physo108792;Parent=Physo108792;rank=3 scaffold_32 . exon 185971 186039 . - . ID=Physo108792.3;Parent=Physo108792;constitutive=1;rank=3 scaffold_32 . CDS 186137 186180 . - 0 ID=Physo108792;Parent=Physo108792;rank=2 scaffold_32 . exon 186137 186180 . - . ID=Physo108792.2;Parent=Physo108792;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 186285 186369 . - 0 ID=Physo108792;Parent=Physo108792;rank=1 scaffold_32 . exon 186285 186369 . - . ID=Physo108792.1;Parent=Physo108792;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . exon 180008 181521 . + . ID=Physo134485.2;Parent=Physo134485;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_32 . exon 181653 181833 . + . ID=Physo134485.3;Parent=Physo134485;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_32 . exon 182062 182314 . + . ID=Physo134485.4;Parent=Physo134485;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . exon 182356 183745 . + . ID=Physo134485.5;Parent=Physo134485;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_32 ensembl protein_coding_gene 186561 188029 . + . ID=Physo134487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320058;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 186561 188029 . + . ID=Physo134487;Parent=Physo134487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 186561 187448 . + . ID=Physo134487.1;Parent=Physo134487;constitutive=1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 186621 187448 . + 0 ID=Physo134487;Parent=Physo134487;rank=1 scaffold_32 . CDS 187541 187819 . + 0 ID=Physo134487;Parent=Physo134487;rank=2 scaffold_32 . exon 187541 188029 . + . ID=Physo134487.2;Parent=Physo134487;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_32 . repeat_region 189322 189350 . ? . description=trf scaffold_32 . repeat_region 189925 189951 . ? . description=trf scaffold_32 . repeat_region 194319 194432 . ? . description=trf scaffold_32 . repeat_region 194698 194741 . ? . description=trf scaffold_32 . repeat_region 195106 195146 . ? . description=trf scaffold_32 ensembl protein_coding_gene 189583 191316 . + . ID=Physo134488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320059;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 189583 191316 . + . ID=Physo134488;Parent=Physo134488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 189583 191316 . + . ID=Physo134488.1;Parent=Physo134488;constitutive=1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 189634 191316 . + 0 ID=Physo134488;Parent=Physo134488;rank=1 scaffold_32 ensembl protein_coding_gene 192347 194249 . + . ID=Physo134489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320060;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 192347 194249 . + . ID=Physo134489;Parent=Physo134489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 192347 192996 . + 0 ID=Physo134489;Parent=Physo134489;rank=1 scaffold_32 . exon 192347 192996 . + . ID=Physo134489.1;Parent=Physo134489;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 193100 194249 . + 0 ID=Physo134489;Parent=Physo134489;rank=2 scaffold_32 . exon 193100 194249 . + . ID=Physo134489.2;Parent=Physo134489;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 ensembl protein_coding_gene 194306 195697 . - . ID=Physo134490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320061;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 194306 195697 . - . ID=Physo134490;Parent=Physo134490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 194306 195697 . - 0 ID=Physo134490;Parent=Physo134490;rank=1 scaffold_32 . exon 194306 195697 . - . ID=Physo134490.1;Parent=Physo134490;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 196598 197491 . + . ID=Physo134491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320062;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 196598 197491 . + . ID=Physo134491;Parent=Physo134491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 196598 197491 . + 0 ID=Physo134491;Parent=Physo134491;rank=1 scaffold_32 . exon 196598 197491 . + . ID=Physo134491.1;Parent=Physo134491;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 198661 199689 . - . ID=Physo156971;biotype=protein_coding;external_name=C_scaffold_32000022;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 198661 199689 . - . ID=Physo156971;Parent=Physo156971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 198661 199689 . - 0 ID=Physo156971;Parent=Physo156971;rank=1 scaffold_32 . exon 198661 199689 . - . ID=Physo156971.1;Parent=Physo156971;constitutive=1;rank=1 scaffold_32 . biological_region 199472 199475 0.999 - . logic_name=eponine scaffold_32 . biological_region 199637 199642 0.999 + . logic_name=eponine scaffold_32 . biological_region 199676 199678 0.999 - . logic_name=eponine scaffold_32 . biological_region 200143 200153 0.999 + . logic_name=eponine scaffold_32 . biological_region 200166 200169 0.999 + . logic_name=eponine scaffold_32 . biological_region 200189 200193 0.999 + . logic_name=eponine scaffold_32 . biological_region 200209 200215 0.999 - . logic_name=eponine scaffold_32 . biological_region 200214 200216 0.999 + . logic_name=eponine scaffold_32 . biological_region 200233 200238 0.999 - . logic_name=eponine scaffold_32 . biological_region 200250 200257 0.999 + . logic_name=eponine scaffold_32 . biological_region 200314 200315 0.999 + . logic_name=eponine scaffold_32 . biological_region 200403 200404 0.999 - . logic_name=eponine scaffold_32 . biological_region 200534 200537 0.999 + . logic_name=eponine scaffold_32 . biological_region 200663 200666 0.999 - . logic_name=eponine scaffold_32 . biological_region 200747 200749 0.999 + . logic_name=eponine scaffold_32 . biological_region 200963 200970 0.999 - . logic_name=eponine scaffold_32 . biological_region 201021 201023 0.999 + . logic_name=eponine scaffold_32 . biological_region 201023 201029 0.999 - . logic_name=eponine scaffold_32 . biological_region 201907 201909 0.999 - . logic_name=eponine scaffold_32 . biological_region 201953 201953 0.999 - . logic_name=eponine scaffold_32 . biological_region 202065 202067 0.999 - . logic_name=eponine scaffold_32 . biological_region 203440 203446 0.999 - . logic_name=eponine scaffold_32 . biological_region 206701 206701 0.999 - . logic_name=eponine scaffold_32 . biological_region 206785 206786 0.999 - . logic_name=eponine scaffold_32 . biological_region 208479 208479 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 200260 200994 . + . ID=Physo134493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320064;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 200260 200994 . + . ID=Physo134493;Parent=Physo134493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 200260 200994 . + 0 ID=Physo134493;Parent=Physo134493;rank=1 scaffold_32 . exon 200260 200994 . + . ID=Physo134493.1;Parent=Physo134493;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 204723 205576 . + . ID=Physo134495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320066;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 204723 205576 . + . ID=Physo134495;Parent=Physo134495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 204723 205367 . + 0 ID=Physo134495;Parent=Physo134495;rank=1 scaffold_32 . exon 204723 205576 . + . ID=Physo134495.1;Parent=Physo134495;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_32 ensembl protein_coding_gene 205691 207802 . - . ID=Physo134496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320067;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 205691 207802 . - . ID=Physo134496;Parent=Physo134496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 205691 207802 . - 0 ID=Physo134496;Parent=Physo134496;rank=1 scaffold_32 . exon 205691 207802 . - . ID=Physo134496.1;Parent=Physo134496;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 208330 209090 . + . ID=Physo134497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320068;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 208330 209090 . + . ID=Physo134497;Parent=Physo134497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 208330 208758 . + 0 ID=Physo134497;Parent=Physo134497;rank=1 scaffold_32 . exon 208330 208758 . + . ID=Physo134497.1;Parent=Physo134497;constitutive=1;rank=1 scaffold_32 . CDS 208833 209090 . + 0 ID=Physo134497;Parent=Physo134497;rank=2 scaffold_32 . exon 208833 209090 . + . ID=Physo134497.2;Parent=Physo134497;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 201666 202307 . + . ID=Physo156973;biotype=protein_coding;external_name=C_scaffold_32000024;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 201666 202307 . + . ID=Physo156973;Parent=Physo156973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 201666 202100 . + 0 ID=Physo156973;Parent=Physo156973;rank=1 scaffold_32 . exon 201666 202100 . + . ID=Physo156973.1;Parent=Physo156973;constitutive=1;rank=1 scaffold_32 . CDS 202134 202307 . + 0 ID=Physo156973;Parent=Physo156973;rank=2 scaffold_32 . exon 202134 202307 . + . ID=Physo156973.2;Parent=Physo156973;constitutive=1;rank=2 scaffold_32 . repeat_region 210078 210127 . ? . description=trf scaffold_32 . repeat_region 210116 210151 . ? . description=trf scaffold_32 . repeat_region 210668 210696 . ? . description=trf scaffold_32 . repeat_region 210705 210737 . ? . description=trf scaffold_32 . repeat_region 211195 211202 . ? . description=dust scaffold_32 . repeat_region 211344 211375 . ? . description=trf scaffold_32 ensembl protein_coding_gene 209988 210455 . - . ID=Physo134498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320069;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 209988 210455 . - . ID=Physo134498;Parent=Physo134498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 209988 210455 . - 0 ID=Physo134498;Parent=Physo134498;rank=1 scaffold_32 . exon 209988 210455 . - . ID=Physo134498.1;Parent=Physo134498;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 216446 218407 . + . ID=Physo134499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320070;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 216446 218407 . + . ID=Physo134499;Parent=Physo134499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 216446 218407 . + 0 ID=Physo134499;Parent=Physo134499;rank=1 scaffold_32 . exon 216446 218407 . + . ID=Physo134499.1;Parent=Physo134499;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 218773 221031 . - . ID=Physo134500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320071;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 218773 221031 . - . ID=Physo134500;Parent=Physo134500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 218773 221031 . - 0 ID=Physo134500;Parent=Physo134500;rank=1 scaffold_32 . exon 218773 221031 . - . ID=Physo134500.1;Parent=Physo134500;constitutive=1;rank=1 scaffold_32 . biological_region 220144 220148 0.999 + . logic_name=eponine scaffold_32 . biological_region 221731 221738 0.999 - . logic_name=eponine scaffold_32 . biological_region 222587 222588 0.999 + . logic_name=eponine scaffold_32 . biological_region 222659 222668 0.999 - . logic_name=eponine scaffold_32 . biological_region 225588 225592 0.999 + . logic_name=eponine scaffold_32 . biological_region 225690 225691 0.999 - . logic_name=eponine scaffold_32 . biological_region 226384 226384 0.999 + . logic_name=eponine scaffold_32 . biological_region 227103 227105 0.999 + . logic_name=eponine scaffold_32 . biological_region 227142 227147 0.999 + . logic_name=eponine scaffold_32 . biological_region 227200 227203 0.999 - . logic_name=eponine scaffold_32 . biological_region 227260 227260 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 226920 227318 . - . ID=Physo134504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320075;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 226920 227318 . - . ID=Physo134504;Parent=Physo134504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 226920 227318 . - 0 ID=Physo134504;Parent=Physo134504;rank=1 scaffold_32 . exon 226920 227318 . - . ID=Physo134504.1;Parent=Physo134504;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 221247 225853 . + . ID=Physo156974;biotype=protein_coding;external_name=C_scaffold_32000025;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 221247 225853 . + . ID=Physo156974;Parent=Physo156974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 221247 221645 . + 0 ID=Physo156974;Parent=Physo156974;rank=1 scaffold_32 . exon 221247 221645 . + . ID=Physo156974.1;Parent=Physo156974;constitutive=1;rank=1 scaffold_32 . CDS 221703 221949 . + 0 ID=Physo156974;Parent=Physo156974;rank=2 scaffold_32 . exon 221703 221949 . + . ID=Physo156974.2;Parent=Physo156974;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 221980 222152 . + 0 ID=Physo156974;Parent=Physo156974;rank=3 scaffold_32 . exon 221980 222152 . + . ID=Physo156974.3;Parent=Physo156974;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 222488 222844 . + 0 ID=Physo156974;Parent=Physo156974;rank=4 scaffold_32 . exon 222488 222844 . + . ID=Physo156974.4;Parent=Physo156974;constitutive=1;rank=4 scaffold_32 . CDS 222869 223889 . + 0 ID=Physo156974;Parent=Physo156974;rank=5 scaffold_32 . exon 222869 223889 . + . ID=Physo156974.5;Parent=Physo156974;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_32 . CDS 223911 224621 . + 0 ID=Physo156974;Parent=Physo156974;rank=6 scaffold_32 . exon 223911 224621 . + . ID=Physo156974.6;Parent=Physo156974;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 224898 225061 . + 0 ID=Physo156974;Parent=Physo156974;rank=7 scaffold_32 . exon 224898 225061 . + . ID=Physo156974.7;Parent=Physo156974;constitutive=1;ensembl_phase=1;rank=7 scaffold_32 . CDS 225098 225853 . + 0 ID=Physo156974;Parent=Physo156974;rank=8 scaffold_32 . exon 225098 225853 . + . ID=Physo156974.8;Parent=Physo156974;constitutive=1;rank=8 scaffold_32 ensembl protein_coding_gene 226022 226648 . + . ID=Physo156975;biotype=protein_coding;external_name=C_scaffold_32000026;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 226022 226648 . + . ID=Physo156975;Parent=Physo156975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 226022 226186 . + 0 ID=Physo156975;Parent=Physo156975;rank=1 scaffold_32 . exon 226022 226186 . + . ID=Physo156975.1;Parent=Physo156975;constitutive=1;rank=1 scaffold_32 . CDS 226275 226648 . + 0 ID=Physo156975;Parent=Physo156975;rank=2 scaffold_32 . exon 226275 226648 . + . ID=Physo156975.2;Parent=Physo156975;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . repeat_region 228939 228948 . ? . description=dust scaffold_32 ensembl protein_coding_gene 229650 243868 . + . ID=Physo134505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320076;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 229650 243868 . + . ID=Physo134505;Parent=Physo134505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 229650 229754 . + 0 ID=Physo134505;Parent=Physo134505;rank=1 scaffold_32 . exon 229650 229754 . + . ID=Physo134505.1;Parent=Physo134505;constitutive=1;rank=1 scaffold_32 . CDS 229910 243868 . + 0 ID=Physo134505;Parent=Physo134505;rank=2 scaffold_32 . exon 229910 243868 . + . ID=Physo134505.2;Parent=Physo134505;constitutive=1;rank=2 scaffold_32 . biological_region 242800 242804 0.999 - . logic_name=eponine scaffold_32 . repeat_region 246320 246350 . ? . description=trf scaffold_32 . repeat_region 252835 252847 . ? . description=dust scaffold_32 . repeat_region 255071 255079 . ? . description=dust scaffold_32 . repeat_region 256708 256986 . - . description=GypsyPi-1c_I-int scaffold_32 . repeat_region 257117 257138 . ? . description=dust scaffold_32 . repeat_region 257286 259675 . - . description=GypsyPi-1c_I-int scaffold_32 ensembl protein_coding_gene 255178 256691 . + . ID=Physo134506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320077;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 255178 256691 . + . ID=Physo134506;Parent=Physo134506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 255178 255678 . + 0 ID=Physo134506;Parent=Physo134506;rank=1 scaffold_32 . exon 255178 255678 . + . ID=Physo134506.1;Parent=Physo134506;constitutive=1;rank=1 scaffold_32 . CDS 255795 256691 . + 0 ID=Physo134506;Parent=Physo134506;rank=2 scaffold_32 . exon 255795 256691 . + . ID=Physo134506.2;Parent=Physo134506;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 256944 259788 . - . ID=Physo134507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320078;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 256944 259788 . - . ID=Physo134507;Parent=Physo134507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 256944 256950 . - 0 ID=Physo134507;Parent=Physo134507;rank=3 scaffold_32 . exon 256944 256950 . - . ID=Physo134507.3;Parent=Physo134507;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 256991 259724 . - 0 ID=Physo134507;Parent=Physo134507;rank=2 scaffold_32 . exon 256991 259724 . - . ID=Physo134507.2;Parent=Physo134507;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . CDS 259755 259788 . - 0 ID=Physo134507;Parent=Physo134507;rank=1 scaffold_32 . repeat_region 259977 260203 . ? . description=trf scaffold_32 . biological_region 260449 260450 0.999 - . logic_name=eponine scaffold_32 . exon 259755 259788 . - . ID=Physo134507.1;Parent=Physo134507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . repeat_region 277570 277619 . ? . description=dust scaffold_32 ensembl protein_coding_gene 268999 271950 . + . ID=Physo134508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320079;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 268999 271950 . + . ID=Physo134508;Parent=Physo134508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 268999 271950 . + 0 ID=Physo134508;Parent=Physo134508;rank=1 scaffold_32 . exon 268999 271950 . + . ID=Physo134508.1;Parent=Physo134508;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 275315 276743 . + . ID=Physo134509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320080;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 275315 276743 . + . ID=Physo134509;Parent=Physo134509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 275315 276711 . + 0 ID=Physo134509;Parent=Physo134509;rank=1 scaffold_32 . exon 275315 276711 . + . ID=Physo134509.1;Parent=Physo134509;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 276740 276743 . + 0 ID=Physo134509;Parent=Physo134509;rank=2 scaffold_32 . exon 276740 276743 . + . ID=Physo134509.2;Parent=Physo134509;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . biological_region 278976 278978 0.999 + . logic_name=eponine scaffold_32 . biological_region 279810 279814 0.999 + . logic_name=eponine scaffold_32 . biological_region 279831 279832 0.999 + . logic_name=eponine scaffold_32 . biological_region 279901 279907 0.999 - . logic_name=eponine scaffold_32 . biological_region 280246 280249 0.999 + . logic_name=eponine scaffold_32 . biological_region 280249 280254 0.999 - . logic_name=eponine scaffold_32 . biological_region 280439 280439 0.999 - . logic_name=eponine scaffold_32 . biological_region 280599 280604 0.999 - . logic_name=eponine scaffold_32 . biological_region 284809 284812 0.999 + . logic_name=eponine scaffold_32 . biological_region 284850 284854 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 282015 285413 . - . ID=Physo134511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320082;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 282015 285413 . - . ID=Physo134511;Parent=Physo134511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 282015 282153 . - 0 ID=Physo134511;Parent=Physo134511;rank=6 scaffold_32 . exon 282015 282153 . - . ID=Physo134511.6;Parent=Physo134511;constitutive=1;ensembl_phase=2;rank=6 scaffold_32 . CDS 282243 282301 . - 0 ID=Physo134511;Parent=Physo134511;rank=5 scaffold_32 . exon 282243 282301 . - . ID=Physo134511.5;Parent=Physo134511;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_32 . CDS 282379 282525 . - 0 ID=Physo134511;Parent=Physo134511;rank=4 scaffold_32 . exon 282379 282525 . - . ID=Physo134511.4;Parent=Physo134511;constitutive=1;rank=4 scaffold_32 . CDS 282615 282727 . - 0 ID=Physo134511;Parent=Physo134511;rank=3 scaffold_32 . exon 282615 282727 . - . ID=Physo134511.3;Parent=Physo134511;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 282803 285158 . - 0 ID=Physo134511;Parent=Physo134511;rank=2 scaffold_32 . exon 282803 285158 . - . ID=Physo134511.2;Parent=Physo134511;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 285246 285413 . - 0 ID=Physo134511;Parent=Physo134511;rank=1 scaffold_32 . exon 285246 285413 . - . ID=Physo134511.1;Parent=Physo134511;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 278750 281749 . - . ID=Physo156976;biotype=protein_coding;external_name=C_scaffold_32000027;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 278750 281749 . - . ID=Physo156976;Parent=Physo156976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 278750 279172 . - 0 ID=Physo156976;Parent=Physo156976;rank=5 scaffold_32 . exon 278750 279172 . - . ID=Physo156976.5;Parent=Physo156976;constitutive=1;rank=5 scaffold_32 . CDS 279254 279333 . - 0 ID=Physo156976;Parent=Physo156976;rank=4 scaffold_32 . exon 279254 279333 . - . ID=Physo156976.4;Parent=Physo156976;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 279420 279507 . - 0 ID=Physo156976;Parent=Physo156976;rank=3 scaffold_32 . exon 279420 279507 . - . ID=Physo156976.3;Parent=Physo156976;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . CDS 279547 280012 . - 0 ID=Physo156976;Parent=Physo156976;rank=2 scaffold_32 . exon 279547 280012 . - . ID=Physo156976.2;Parent=Physo156976;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 280170 281749 . - 0 ID=Physo156976;Parent=Physo156976;rank=1 scaffold_32 . exon 280170 281749 . - . ID=Physo156976.1;Parent=Physo156976;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . repeat_region 288921 288959 . ? . description=trf scaffold_32 . repeat_region 292131 292170 . ? . description=trf scaffold_32 . repeat_region 292529 292543 . ? . description=dust scaffold_32 . repeat_region 293343 293350 . ? . description=dust scaffold_32 . repeat_region 293966 293998 . ? . description=trf scaffold_32 . repeat_region 297171 297304 . - . description=GypsyPi-1c_I-int scaffold_32 . repeat_region 297806 300492 . - . description=GypsyPi-1c_I-int scaffold_32 ensembl protein_coding_gene 298295 298693 . - . ID=Physo108793;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_320005;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 298295 298693 . - . ID=Physo108793;Parent=Physo108793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 298295 298693 . - 0 ID=Physo108793;Parent=Physo108793;rank=1 scaffold_32 . exon 298295 298693 . - . ID=Physo108793.1;Parent=Physo108793;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 290800 291648 . - . ID=Physo134512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320083;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 290800 291648 . - . ID=Physo134512;Parent=Physo134512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 290800 291111 . - 0 ID=Physo134512;Parent=Physo134512;rank=2 scaffold_32 . exon 290800 291111 . - . ID=Physo134512.2;Parent=Physo134512;constitutive=1;rank=2 scaffold_32 . CDS 291349 291648 . - 0 ID=Physo134512;Parent=Physo134512;rank=1 scaffold_32 . exon 291349 291648 . - . ID=Physo134512.1;Parent=Physo134512;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 294373 296993 . + . ID=Physo134513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320084;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 294373 296993 . + . ID=Physo134513;Parent=Physo134513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 294373 294436 . + . ID=Physo134513.1;Parent=Physo134513;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_32 . exon 294579 294623 . + . ID=Physo134513.2;Parent=Physo134513;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_32 . exon 294686 295046 . + . ID=Physo134513.3;Parent=Physo134513;constitutive=1;ensembl_phase=-1;rank=3 scaffold_32 . CDS 294822 295046 . + 0 ID=Physo134513;Parent=Physo134513;rank=1 scaffold_32 . CDS 295118 295322 . + 0 ID=Physo134513;Parent=Physo134513;rank=2 scaffold_32 . exon 295118 295322 . + . ID=Physo134513.4;Parent=Physo134513;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_32 . CDS 295930 296729 . + 0 ID=Physo134513;Parent=Physo134513;rank=3 scaffold_32 . exon 295930 296729 . + . ID=Physo134513.5;Parent=Physo134513;constitutive=1;ensembl_phase=1;rank=5 scaffold_32 . CDS 296754 296993 . + 0 ID=Physo134513;Parent=Physo134513;rank=4 scaffold_32 . exon 296754 296993 . + . ID=Physo134513.6;Parent=Physo134513;constitutive=1;rank=6 scaffold_32 . biological_region 298354 298360 0.999 - . logic_name=eponine scaffold_32 . biological_region 303211 303218 0.999 + . logic_name=eponine scaffold_32 . biological_region 303931 303935 0.999 + . logic_name=eponine scaffold_32 . biological_region 303963 303963 0.999 + . logic_name=eponine scaffold_32 . biological_region 304038 304044 0.999 - . logic_name=eponine scaffold_32 . biological_region 306628 306628 0.999 + . logic_name=eponine scaffold_32 . biological_region 306696 306698 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 298841 300351 . - . ID=Physo134515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320086;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 298841 300351 . - . ID=Physo134515;Parent=Physo134515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 298841 299524 . - 0 ID=Physo134515;Parent=Physo134515;rank=2 scaffold_32 . exon 298841 299524 . - . ID=Physo134515.2;Parent=Physo134515;constitutive=1;rank=2 scaffold_32 . CDS 299707 300351 . - 0 ID=Physo134515;Parent=Physo134515;rank=1 scaffold_32 . exon 299707 300351 . - . ID=Physo134515.1;Parent=Physo134515;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 306922 309884 . + . ID=Physo134516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320087;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 306922 309884 . + . ID=Physo134516;Parent=Physo134516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 306922 307258 . + 0 ID=Physo134516;Parent=Physo134516;rank=1 scaffold_32 . exon 306922 307258 . + . ID=Physo134516.1;Parent=Physo134516;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 307303 308048 . + 0 ID=Physo134516;Parent=Physo134516;rank=2 scaffold_32 . exon 307303 308048 . + . ID=Physo134516.2;Parent=Physo134516;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 308091 308300 . + 0 ID=Physo134516;Parent=Physo134516;rank=3 scaffold_32 . exon 308091 308300 . + . ID=Physo134516.3;Parent=Physo134516;constitutive=1;rank=3 scaffold_32 . CDS 308394 309884 . + 0 ID=Physo134516;Parent=Physo134516;rank=4 scaffold_32 . repeat_region 307292 309672 . + . description=GypsyPi-1c_I-int scaffold_32 . repeat_region 309944 310222 . + . description=GypsyPi-1c_I-int scaffold_32 . repeat_region 312502 312559 . ? . description=trf scaffold_32 . repeat_region 316709 316756 . ? . description=dust scaffold_32 . repeat_region 316710 316756 . ? . description=trf scaffold_32 . repeat_region 316892 316902 . ? . description=dust scaffold_32 . exon 308394 309884 . + . ID=Physo134516.4;Parent=Physo134516;constitutive=1;rank=4 scaffold_32 ensembl protein_coding_gene 310239 311773 . - . ID=Physo134517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320088;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 310239 311773 . - . ID=Physo134517;Parent=Physo134517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 310239 310962 . - 0 ID=Physo134517;Parent=Physo134517;rank=2 scaffold_32 . exon 310239 310962 . - . ID=Physo134517.2;Parent=Physo134517;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 311256 311773 . - 0 ID=Physo134517;Parent=Physo134517;rank=1 scaffold_32 . exon 311256 311773 . - . ID=Physo134517.1;Parent=Physo134517;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 315145 315645 . - . ID=Physo134518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320089;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 315145 315645 . - . ID=Physo134518;Parent=Physo134518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 315145 315645 . - 0 ID=Physo134518;Parent=Physo134518;rank=1 scaffold_32 . exon 315145 315645 . - . ID=Physo134518.1;Parent=Physo134518;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 317627 319160 . - . ID=Physo134519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320090;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 317627 319160 . - . ID=Physo134519;Parent=Physo134519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 317627 317833 . - 0 ID=Physo134519;Parent=Physo134519;rank=3 scaffold_32 . exon 317627 317833 . - . ID=Physo134519.3;Parent=Physo134519;constitutive=1;rank=3 scaffold_32 . CDS 318070 318519 . - 0 ID=Physo134519;Parent=Physo134519;rank=2 scaffold_32 . exon 318070 318519 . - . ID=Physo134519.2;Parent=Physo134519;constitutive=1;rank=2 scaffold_32 . CDS 318783 319160 . - 0 ID=Physo134519;Parent=Physo134519;rank=1 scaffold_32 . biological_region 322611 322611 0.999 + . logic_name=eponine scaffold_32 . biological_region 322685 322685 0.999 + . logic_name=eponine scaffold_32 . biological_region 322711 322717 0.999 - . logic_name=eponine scaffold_32 . biological_region 322750 322753 0.999 - . logic_name=eponine scaffold_32 . biological_region 322765 322766 0.999 - . logic_name=eponine scaffold_32 . biological_region 323866 323871 0.999 - . logic_name=eponine scaffold_32 . biological_region 324676 324681 0.999 + . logic_name=eponine scaffold_32 . biological_region 327372 327376 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 323681 324945 . + . ID=Physo108794;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_320006;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 323681 324945 . + . ID=Physo108794;Parent=Physo108794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 323681 323716 . + 0 ID=Physo108794;Parent=Physo108794;rank=1 scaffold_32 . exon 323681 323716 . + . ID=Physo108794.1;Parent=Physo108794;constitutive=1;rank=1 scaffold_32 . CDS 323979 324201 . + 0 ID=Physo108794;Parent=Physo108794;rank=2 scaffold_32 . exon 323979 324201 . + . ID=Physo108794.2;Parent=Physo108794;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 324285 324360 . + 0 ID=Physo108794;Parent=Physo108794;rank=3 scaffold_32 . exon 324285 324360 . + . ID=Physo108794.3;Parent=Physo108794;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_32 . CDS 324430 324814 . + 0 ID=Physo108794;Parent=Physo108794;rank=4 scaffold_32 . exon 324430 324945 . + . ID=Physo108794.4;Parent=Physo108794;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_32 . exon 318783 319160 . - . ID=Physo134519.1;Parent=Physo134519;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 325025 330447 . - . ID=Physo134522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320093;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 325025 330447 . - . ID=Physo134522;Parent=Physo134522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 325025 330364 . - 0 ID=Physo134522;Parent=Physo134522;rank=2 scaffold_32 . exon 325025 330364 . - . ID=Physo134522.2;Parent=Physo134522;constitutive=1;rank=2 scaffold_32 . CDS 330409 330447 . - 0 ID=Physo134522;Parent=Physo134522;rank=1 scaffold_32 . repeat_region 330938 330977 . ? . description=dust scaffold_32 . repeat_region 331028 331089 . ? . description=dust scaffold_32 . repeat_region 334406 334424 . ? . description=dust scaffold_32 ensembl protein_coding_gene 334470 335182 . - . ID=Physo108795;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_320007;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 334470 335182 . - . ID=Physo108795;Parent=Physo108795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 334470 335182 . - . ID=Physo108795.1;Parent=Physo108795;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 334629 335144 . - 0 ID=Physo108795;Parent=Physo108795;rank=1 scaffold_32 . exon 330409 330447 . - . ID=Physo134522.1;Parent=Physo134522;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 331348 334074 . + . ID=Physo134523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320094;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 331348 334074 . + . ID=Physo134523;Parent=Physo134523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 331348 334074 . + 0 ID=Physo134523;Parent=Physo134523;rank=1 scaffold_32 . exon 331348 334074 . + . ID=Physo134523.1;Parent=Physo134523;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 335379 337964 . - . ID=Physo134525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320096;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 335379 337964 . - . ID=Physo134525;Parent=Physo134525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 335379 337964 . - 0 ID=Physo134525;Parent=Physo134525;rank=1 scaffold_32 . exon 335379 337964 . - . ID=Physo134525.1;Parent=Physo134525;constitutive=1;rank=1 scaffold_32 . repeat_region 338824 338915 . ? . description=trf scaffold_32 . biological_region 345548 345550 0.999 + . logic_name=eponine scaffold_32 . biological_region 345655 345658 0.999 + . logic_name=eponine scaffold_32 . biological_region 345674 345680 0.999 + . logic_name=eponine scaffold_32 . biological_region 345774 345782 0.999 - . logic_name=eponine scaffold_32 . biological_region 346075 346080 0.999 - . logic_name=eponine scaffold_32 . biological_region 347279 347286 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 343051 344017 . + . ID=Physo108796;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_320008;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 343051 344017 . + . ID=Physo108796;Parent=Physo108796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 343051 343146 . + 0 ID=Physo108796;Parent=Physo108796;rank=1 scaffold_32 . exon 343051 343146 . + . ID=Physo108796.1;Parent=Physo108796;constitutive=1;rank=1 scaffold_32 . CDS 343320 343448 . + 0 ID=Physo108796;Parent=Physo108796;rank=2 scaffold_32 . exon 343320 343448 . + . ID=Physo108796.2;Parent=Physo108796;constitutive=1;rank=2 scaffold_32 . CDS 343532 344017 . + 0 ID=Physo108796;Parent=Physo108796;rank=3 scaffold_32 . exon 343532 344017 . + . ID=Physo108796.3;Parent=Physo108796;constitutive=1;rank=3 scaffold_32 ensembl protein_coding_gene 339495 340895 . - . ID=Physo134526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320097;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 339495 340895 . - . ID=Physo134526;Parent=Physo134526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 339495 340325 . - . ID=Physo134526.3;Parent=Physo134526;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_32 . CDS 339552 340325 . - 0 ID=Physo134526;Parent=Physo134526;rank=3 scaffold_32 . CDS 340409 340675 . - 0 ID=Physo134526;Parent=Physo134526;rank=2 scaffold_32 . exon 340409 340675 . - . ID=Physo134526.2;Parent=Physo134526;constitutive=1;rank=2 scaffold_32 . CDS 340785 340895 . - 0 ID=Physo134526;Parent=Physo134526;rank=1 scaffold_32 . exon 340785 340895 . - . ID=Physo134526.1;Parent=Physo134526;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 341209 342871 . + . ID=Physo134527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320098;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 341209 342871 . + . ID=Physo134527;Parent=Physo134527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 341209 341385 . + . ID=Physo134527.1;Parent=Physo134527;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 341223 341385 . + 0 ID=Physo134527;Parent=Physo134527;rank=1 scaffold_32 . CDS 341461 342016 . + 0 ID=Physo134527;Parent=Physo134527;rank=2 scaffold_32 . exon 341461 342016 . + . ID=Physo134527.2;Parent=Physo134527;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . CDS 342084 342258 . + 0 ID=Physo134527;Parent=Physo134527;rank=3 scaffold_32 . exon 342084 342258 . + . ID=Physo134527.3;Parent=Physo134527;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 342325 342536 . + 0 ID=Physo134527;Parent=Physo134527;rank=4 scaffold_32 . exon 342325 342536 . + . ID=Physo134527.4;Parent=Physo134527;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_32 . CDS 342571 342871 . + 0 ID=Physo134527;Parent=Physo134527;rank=5 scaffold_32 . exon 342571 342871 . + . ID=Physo134527.5;Parent=Physo134527;constitutive=1;ensembl_phase=2;rank=5 scaffold_32 ensembl protein_coding_gene 344223 345827 . - . ID=Physo134529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320100;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 344223 345827 . - . ID=Physo134529;Parent=Physo134529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 344223 345827 . - 0 ID=Physo134529;Parent=Physo134529;rank=1 scaffold_32 . exon 344223 345827 . - . ID=Physo134529.1;Parent=Physo134529;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 347190 348308 . + . ID=Physo134530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320101;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 347190 348308 . + . ID=Physo134530;Parent=Physo134530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 347190 347538 . + 0 ID=Physo134530;Parent=Physo134530;rank=1 scaffold_32 . exon 347190 347538 . + . ID=Physo134530.1;Parent=Physo134530;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 347577 347730 . + 0 ID=Physo134530;Parent=Physo134530;rank=2 scaffold_32 . exon 347577 347730 . + . ID=Physo134530.2;Parent=Physo134530;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . CDS 347807 348308 . + 0 ID=Physo134530;Parent=Physo134530;rank=3 scaffold_32 . exon 347807 348308 . + . ID=Physo134530.3;Parent=Physo134530;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 ensembl protein_coding_gene 348414 351521 . - . ID=Physo134531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320102;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 348414 351521 . - . ID=Physo134531;Parent=Physo134531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 348414 351521 . - 0 ID=Physo134531;Parent=Physo134531;rank=1 scaffold_32 . exon 348414 351521 . - . ID=Physo134531.1;Parent=Physo134531;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 351808 357384 . - . ID=Physo134532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320103;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 351808 357384 . - . ID=Physo134532;Parent=Physo134532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 351808 357384 . - 0 ID=Physo134532;Parent=Physo134532;rank=1 scaffold_32 . exon 351808 357384 . - . ID=Physo134532.1;Parent=Physo134532;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 357517 358753 . + . ID=Physo134533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320104;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 357517 358753 . + . ID=Physo134533;Parent=Physo134533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 357517 358016 . + . ID=Physo134533.1;Parent=Physo134533;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 357911 358016 . + 0 ID=Physo134533;Parent=Physo134533;rank=1 scaffold_32 . CDS 358096 358274 . + 0 ID=Physo134533;Parent=Physo134533;rank=2 scaffold_32 . CDS 358351 358446 . + 0 ID=Physo134533;Parent=Physo134533;rank=3 scaffold_32 . CDS 358541 358753 . + 0 ID=Physo134533;Parent=Physo134533;rank=4 scaffold_32 . biological_region 358164 358167 0.999 + . logic_name=eponine scaffold_32 . biological_region 359445 359450 0.999 + . logic_name=eponine scaffold_32 . biological_region 359480 359484 0.999 + . logic_name=eponine scaffold_32 . biological_region 359505 359506 0.999 + . logic_name=eponine scaffold_32 . repeat_region 359629 359683 . ? . description=dust scaffold_32 . biological_region 365364 365368 0.999 - . logic_name=eponine scaffold_32 . biological_region 365383 365387 0.999 - . logic_name=eponine scaffold_32 . biological_region 365602 365610 0.999 + . logic_name=eponine scaffold_32 . biological_region 365625 365627 0.999 + . logic_name=eponine scaffold_32 . biological_region 365793 365796 0.999 - . logic_name=eponine scaffold_32 . repeat_region 366662 366688 . ? . description=trf scaffold_32 . exon 358096 358274 . + . ID=Physo134533.2;Parent=Physo134533;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . exon 358351 358446 . + . ID=Physo134533.3;Parent=Physo134533;constitutive=1;rank=3 scaffold_32 . exon 358541 358753 . + . ID=Physo134533.4;Parent=Physo134533;constitutive=1;rank=4 scaffold_32 ensembl protein_coding_gene 359359 361749 . + . ID=Physo134534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320105;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 359359 361749 . + . ID=Physo134534;Parent=Physo134534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 359359 360059 . + 0 ID=Physo134534;Parent=Physo134534;rank=1 scaffold_32 . exon 359359 360059 . + . ID=Physo134534.1;Parent=Physo134534;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 360142 361324 . + 0 ID=Physo134534;Parent=Physo134534;rank=2 scaffold_32 . exon 360142 361324 . + . ID=Physo134534.2;Parent=Physo134534;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 361414 361542 . + 0 ID=Physo134534;Parent=Physo134534;rank=3 scaffold_32 . exon 361414 361542 . + . ID=Physo134534.3;Parent=Physo134534;constitutive=1;rank=3 scaffold_32 . CDS 361603 361749 . + 0 ID=Physo134534;Parent=Physo134534;rank=4 scaffold_32 . exon 361603 361749 . + . ID=Physo134534.4;Parent=Physo134534;constitutive=1;rank=4 scaffold_32 ensembl protein_coding_gene 361917 365730 . - . ID=Physo156979;biotype=protein_coding;external_name=C_scaffold_32000030;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 361917 365730 . - . ID=Physo156979;Parent=Physo156979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 361917 362130 . - 0 ID=Physo156979;Parent=Physo156979;rank=11 scaffold_32 . exon 361917 362130 . - . ID=Physo156979.11;Parent=Physo156979;constitutive=1;ensembl_phase=2;rank=11 scaffold_32 . CDS 362197 362282 . - 0 ID=Physo156979;Parent=Physo156979;rank=10 scaffold_32 . exon 362197 362282 . - . ID=Physo156979.10;Parent=Physo156979;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_32 . CDS 362353 362442 . - 0 ID=Physo156979;Parent=Physo156979;rank=9 scaffold_32 . exon 362353 362442 . - . ID=Physo156979.9;Parent=Physo156979;constitutive=1;rank=9 scaffold_32 . CDS 362515 362611 . - 0 ID=Physo156979;Parent=Physo156979;rank=8 scaffold_32 . exon 362515 362611 . - . ID=Physo156979.8;Parent=Physo156979;constitutive=1;ensembl_phase=2;rank=8 scaffold_32 . CDS 362695 362812 . - 0 ID=Physo156979;Parent=Physo156979;rank=7 scaffold_32 . exon 362695 362812 . - . ID=Physo156979.7;Parent=Physo156979;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_32 . CDS 362890 362937 . - 0 ID=Physo156979;Parent=Physo156979;rank=6 scaffold_32 . exon 362890 362937 . - . ID=Physo156979.6;Parent=Physo156979;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 363239 364457 . - 0 ID=Physo156979;Parent=Physo156979;rank=5 scaffold_32 . exon 363239 364457 . - . ID=Physo156979.5;Parent=Physo156979;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_32 . CDS 364518 364619 . - 0 ID=Physo156979;Parent=Physo156979;rank=4 scaffold_32 . exon 364518 364619 . - . ID=Physo156979.4;Parent=Physo156979;constitutive=1;rank=4 scaffold_32 . CDS 364718 364793 . - 0 ID=Physo156979;Parent=Physo156979;rank=3 scaffold_32 . exon 364718 364793 . - . ID=Physo156979.3;Parent=Physo156979;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 364871 365005 . - 0 ID=Physo156979;Parent=Physo156979;rank=2 scaffold_32 . exon 364871 365005 . - . ID=Physo156979.2;Parent=Physo156979;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_32 . CDS 365075 365730 . - 0 ID=Physo156979;Parent=Physo156979;rank=1 scaffold_32 . exon 365075 365730 . - . ID=Physo156979.1;Parent=Physo156979;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 366197 370146 . + . ID=Physo156980;biotype=protein_coding;external_name=C_scaffold_32000031;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 366197 370146 . + . ID=Physo156980;Parent=Physo156980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 366197 366360 . + 0 ID=Physo156980;Parent=Physo156980;rank=1 scaffold_32 . exon 366197 366360 . + . ID=Physo156980.1;Parent=Physo156980;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 366520 366646 . + 0 ID=Physo156980;Parent=Physo156980;rank=2 scaffold_32 . exon 366520 366646 . + . ID=Physo156980.2;Parent=Physo156980;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 367169 367364 . + 0 ID=Physo156980;Parent=Physo156980;rank=3 scaffold_32 . exon 367169 367364 . + . ID=Physo156980.3;Parent=Physo156980;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . CDS 367461 368083 . + 0 ID=Physo156980;Parent=Physo156980;rank=4 scaffold_32 . exon 367461 368083 . + . ID=Physo156980.4;Parent=Physo156980;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 368156 368344 . + 0 ID=Physo156980;Parent=Physo156980;rank=5 scaffold_32 . CDS 368415 368557 . + 0 ID=Physo156980;Parent=Physo156980;rank=6 scaffold_32 . CDS 368641 368704 . + 0 ID=Physo156980;Parent=Physo156980;rank=7 scaffold_32 . CDS 368809 368940 . + 0 ID=Physo156980;Parent=Physo156980;rank=8 scaffold_32 . CDS 369018 369095 . + 0 ID=Physo156980;Parent=Physo156980;rank=9 scaffold_32 . CDS 369166 369853 . + 0 ID=Physo156980;Parent=Physo156980;rank=10 scaffold_32 . CDS 370043 370146 . + 0 ID=Physo156980;Parent=Physo156980;rank=11 scaffold_32 . repeat_region 370085 370147 . + . description=(CAG)n scaffold_32 . repeat_region 374345 374407 . + . description=(CTG)n scaffold_32 ensembl protein_coding_gene 374852 377575 . - . ID=Physo134539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320110;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 374852 377575 . - . ID=Physo134539;Parent=Physo134539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 374852 377575 . - 0 ID=Physo134539;Parent=Physo134539;rank=1 scaffold_32 . exon 374852 377575 . - . ID=Physo134539.1;Parent=Physo134539;constitutive=1;rank=1 scaffold_32 . exon 368156 368344 . + . ID=Physo156980.5;Parent=Physo156980;constitutive=1;rank=5 scaffold_32 . exon 368415 368557 . + . ID=Physo156980.6;Parent=Physo156980;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_32 . exon 368641 368704 . + . ID=Physo156980.7;Parent=Physo156980;constitutive=1;ensembl_phase=2;rank=7 scaffold_32 . exon 368809 368940 . + . ID=Physo156980.8;Parent=Physo156980;constitutive=1;rank=8 scaffold_32 . exon 369018 369095 . + . ID=Physo156980.9;Parent=Physo156980;constitutive=1;rank=9 scaffold_32 . exon 369166 369853 . + . ID=Physo156980.10;Parent=Physo156980;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_32 . exon 370043 370146 . + . ID=Physo156980.11;Parent=Physo156980;constitutive=1;ensembl_phase=1;rank=11 scaffold_32 ensembl protein_coding_gene 371949 372548 . + . ID=Physo156982;biotype=protein_coding;external_name=C_scaffold_32000033;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 371949 372548 . + . ID=Physo156982;Parent=Physo156982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 371949 372548 . + 0 ID=Physo156982;Parent=Physo156982;rank=1 scaffold_32 . exon 371949 372548 . + . ID=Physo156982.1;Parent=Physo156982;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 374346 374449 . - . ID=Physo156983;biotype=protein_coding;external_name=C_scaffold_32000034;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 374346 374449 . - . ID=Physo156983;Parent=Physo156983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 374346 374447 . - 0 ID=Physo156983;Parent=Physo156983;rank=1 scaffold_32 . exon 374346 374449 . - . ID=Physo156983.1;Parent=Physo156983;constitutive=1;ensembl_phase=-1;rank=1 scaffold_32 . repeat_region 378431 378438 . ? . description=dust scaffold_32 . biological_region 380799 380799 0.999 + . logic_name=eponine scaffold_32 . repeat_region 381184 381241 . ? . description=trf scaffold_32 . biological_region 381273 381275 0.999 + . logic_name=eponine scaffold_32 . repeat_region 381315 382154 . ? . description=trf scaffold_32 . biological_region 381362 381367 0.999 - . logic_name=eponine scaffold_32 . repeat_region 381397 381429 . ? . description=trf scaffold_32 . biological_region 381444 381450 0.999 - . logic_name=eponine scaffold_32 . repeat_region 381627 381659 . ? . description=trf scaffold_32 . repeat_region 381703 381735 . ? . description=trf scaffold_32 . biological_region 381752 381755 0.999 - . logic_name=eponine scaffold_32 . repeat_region 381933 381965 . ? . description=trf scaffold_32 . biological_region 382131 382132 0.999 - . logic_name=eponine scaffold_32 . biological_region 382179 382183 0.999 - . logic_name=eponine scaffold_32 . biological_region 382217 382218 0.999 + . logic_name=eponine scaffold_32 . biological_region 382324 382328 0.999 - . logic_name=eponine scaffold_32 . repeat_region 382397 382713 . ? . description=trf scaffold_32 . biological_region 382848 382850 0.999 - . logic_name=eponine scaffold_32 . repeat_region 383103 383242 . ? . description=trf scaffold_32 . repeat_region 383121 383289 . ? . description=trf scaffold_32 . biological_region 383189 383191 0.999 - . logic_name=eponine scaffold_32 . biological_region 383396 383396 0.999 - . logic_name=eponine scaffold_32 . biological_region 384187 384189 0.999 + . logic_name=eponine scaffold_32 . biological_region 387158 387159 0.999 - . logic_name=eponine scaffold_32 . biological_region 387203 387208 0.999 - . logic_name=eponine scaffold_32 . biological_region 387395 387399 0.999 + . logic_name=eponine scaffold_32 . repeat_region 387566 387602 . ? . description=trf scaffold_32 . repeat_region 387766 387846 . ? . description=trf scaffold_32 . repeat_region 387766 387846 . ? . description=trf scaffold_32 ensembl protein_coding_gene 377915 379856 . + . ID=Physo134540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320111;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 377915 379856 . + . ID=Physo134540;Parent=Physo134540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 377915 377984 . + 0 ID=Physo134540;Parent=Physo134540;rank=1 scaffold_32 . exon 377915 377984 . + . ID=Physo134540.1;Parent=Physo134540;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 378044 378207 . + 0 ID=Physo134540;Parent=Physo134540;rank=2 scaffold_32 . exon 378044 378207 . + . ID=Physo134540.2;Parent=Physo134540;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 378328 378390 . + 0 ID=Physo134540;Parent=Physo134540;rank=3 scaffold_32 . exon 378328 378390 . + . ID=Physo134540.3;Parent=Physo134540;constitutive=1;rank=3 scaffold_32 . CDS 378477 379856 . + 0 ID=Physo134540;Parent=Physo134540;rank=4 scaffold_32 . exon 378477 379856 . + . ID=Physo134540.4;Parent=Physo134540;constitutive=1;rank=4 scaffold_32 ensembl protein_coding_gene 380989 385202 . + . ID=Physo134541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320112;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 380989 385202 . + . ID=Physo134541;Parent=Physo134541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 380989 382057 . + 0 ID=Physo134541;Parent=Physo134541;rank=1 scaffold_32 . exon 380989 382057 . + . ID=Physo134541.1;Parent=Physo134541;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 382111 385202 . + 0 ID=Physo134541;Parent=Physo134541;rank=2 scaffold_32 . exon 382111 385202 . + . ID=Physo134541.2;Parent=Physo134541;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 ensembl protein_coding_gene 387411 396770 . + . ID=Physo134542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320113;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 387411 396770 . + . ID=Physo134542;Parent=Physo134542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 387411 387615 . + 0 ID=Physo134542;Parent=Physo134542;rank=1 scaffold_32 . exon 387411 387615 . + . ID=Physo134542.1;Parent=Physo134542;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 387933 388653 . + 0 ID=Physo134542;Parent=Physo134542;rank=2 scaffold_32 . CDS 392653 395720 . + 0 ID=Physo134542;Parent=Physo134542;rank=3 scaffold_32 . CDS 395745 395781 . + 0 ID=Physo134542;Parent=Physo134542;rank=4 scaffold_32 . CDS 395821 396505 . + 0 ID=Physo134542;Parent=Physo134542;rank=5 scaffold_32 . CDS 396687 396770 . + 0 ID=Physo134542;Parent=Physo134542;rank=6 scaffold_32 . exon 387933 388653 . + . ID=Physo134542.2;Parent=Physo134542;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . exon 392653 395720 . + . ID=Physo134542.3;Parent=Physo134542;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_32 . exon 395745 395781 . + . ID=Physo134542.4;Parent=Physo134542;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_32 . exon 395821 396505 . + . ID=Physo134542.5;Parent=Physo134542;constitutive=1;ensembl_phase=2;rank=5 scaffold_32 . exon 396687 396770 . + . ID=Physo134542.6;Parent=Physo134542;constitutive=1;rank=6 scaffold_32 ensembl protein_coding_gene 396876 399058 . - . ID=Physo134543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320114;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 396876 399058 . - . ID=Physo134543;Parent=Physo134543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 396876 397589 . - 0 ID=Physo134543;Parent=Physo134543;rank=2 scaffold_32 . exon 396876 397589 . - . ID=Physo134543.2;Parent=Physo134543;constitutive=1;rank=2 scaffold_32 . CDS 397685 399058 . - 0 ID=Physo134543;Parent=Physo134543;rank=1 scaffold_32 . exon 397685 399058 . - . ID=Physo134543.1;Parent=Physo134543;constitutive=1;rank=1 scaffold_32 . biological_region 398166 398167 0.999 + . logic_name=eponine scaffold_32 . biological_region 398589 398593 0.999 - . logic_name=eponine scaffold_32 . biological_region 398645 398649 0.999 + . logic_name=eponine scaffold_32 . biological_region 398663 398666 0.999 - . logic_name=eponine scaffold_32 . biological_region 398851 398854 0.999 - . logic_name=eponine scaffold_32 . biological_region 398904 398910 0.999 - . logic_name=eponine scaffold_32 . biological_region 398975 398983 0.999 - . logic_name=eponine scaffold_32 . repeat_region 400390 400422 . ? . description=trf scaffold_32 . repeat_region 401078 401159 . ? . description=trf scaffold_32 . repeat_region 401207 401227 . ? . description=trf scaffold_32 . biological_region 401497 401500 0.999 - . logic_name=eponine scaffold_32 . biological_region 401535 401539 0.999 + . logic_name=eponine scaffold_32 . biological_region 404657 404661 0.999 + . logic_name=eponine scaffold_32 . biological_region 405555 405557 0.999 - . logic_name=eponine scaffold_32 . biological_region 406549 406551 0.999 + . logic_name=eponine scaffold_32 . biological_region 406856 406859 0.999 - . logic_name=eponine scaffold_32 . biological_region 407482 407488 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 401286 402134 . + . ID=Physo134544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320115;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 401286 402134 . + . ID=Physo134544;Parent=Physo134544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 401286 402134 . + 0 ID=Physo134544;Parent=Physo134544;rank=1 scaffold_32 . exon 401286 402134 . + . ID=Physo134544.1;Parent=Physo134544;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 402361 402879 . - . ID=Physo134545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320116;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 402361 402879 . - . ID=Physo134545;Parent=Physo134545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 402361 402879 . - 0 ID=Physo134545;Parent=Physo134545;rank=1 scaffold_32 . exon 402361 402879 . - . ID=Physo134545.1;Parent=Physo134545;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 404937 405741 . + . ID=Physo134546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320117;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 404937 405741 . + . ID=Physo134546;Parent=Physo134546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 404937 405635 . + 0 ID=Physo134546;Parent=Physo134546;rank=1 scaffold_32 . exon 404937 405741 . + . ID=Physo134546.1;Parent=Physo134546;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_32 ensembl protein_coding_gene 405962 407251 . - . ID=Physo134547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320118;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 405962 407251 . - . ID=Physo134547;Parent=Physo134547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 405962 407251 . - 0 ID=Physo134547;Parent=Physo134547;rank=1 scaffold_32 . exon 405962 407251 . - . ID=Physo134547.1;Parent=Physo134547;constitutive=1;rank=1 scaffold_32 . repeat_region 407976 407998 . ? . description=dust scaffold_32 . repeat_region 408634 408681 . ? . description=dust scaffold_32 ensembl protein_coding_gene 408038 414138 . + . ID=Physo134548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320119;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 408038 414138 . + . ID=Physo134548;Parent=Physo134548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 408038 408587 . + 0 ID=Physo134548;Parent=Physo134548;rank=1 scaffold_32 . exon 408038 408587 . + . ID=Physo134548.1;Parent=Physo134548;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 408684 408739 . + 0 ID=Physo134548;Parent=Physo134548;rank=2 scaffold_32 . exon 408684 408739 . + . ID=Physo134548.2;Parent=Physo134548;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 408812 408874 . + 0 ID=Physo134548;Parent=Physo134548;rank=3 scaffold_32 . exon 408812 408874 . + . ID=Physo134548.3;Parent=Physo134548;constitutive=1;rank=3 scaffold_32 . CDS 408961 412209 . + 0 ID=Physo134548;Parent=Physo134548;rank=4 scaffold_32 . exon 408961 412209 . + . ID=Physo134548.4;Parent=Physo134548;constitutive=1;rank=4 scaffold_32 . CDS 412287 412494 . + 0 ID=Physo134548;Parent=Physo134548;rank=5 scaffold_32 . exon 412287 412494 . + . ID=Physo134548.5;Parent=Physo134548;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_32 . CDS 412986 413044 . + 0 ID=Physo134548;Parent=Physo134548;rank=6 scaffold_32 . exon 412986 413044 . + . ID=Physo134548.6;Parent=Physo134548;constitutive=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 413119 413322 . + 0 ID=Physo134548;Parent=Physo134548;rank=7 scaffold_32 . exon 413119 413322 . + . ID=Physo134548.7;Parent=Physo134548;constitutive=1;rank=7 scaffold_32 . CDS 413392 414138 . + 0 ID=Physo134548;Parent=Physo134548;rank=8 scaffold_32 . exon 413392 414138 . + . ID=Physo134548.8;Parent=Physo134548;constitutive=1;rank=8 scaffold_32 . repeat_region 418293 418312 . ? . description=trf scaffold_32 . biological_region 418950 418952 0.999 + . logic_name=eponine scaffold_32 . biological_region 419514 419518 0.999 - . logic_name=eponine scaffold_32 . repeat_region 419888 419910 . ? . description=trf scaffold_32 . biological_region 419892 419902 0.999 + . logic_name=eponine scaffold_32 . biological_region 419975 419982 0.999 - . logic_name=eponine scaffold_32 . biological_region 421424 421428 0.999 + . logic_name=eponine scaffold_32 . biological_region 424976 424979 0.999 - . logic_name=eponine scaffold_32 . biological_region 425033 425034 0.999 + . logic_name=eponine scaffold_32 . biological_region 426289 426291 0.999 + . logic_name=eponine scaffold_32 . biological_region 426970 426973 0.999 - . logic_name=eponine scaffold_32 . biological_region 427256 427258 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 418166 419140 . - . ID=Physo134549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320120;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 418166 419140 . - . ID=Physo134549;Parent=Physo134549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 418166 418748 . - 0 ID=Physo134549;Parent=Physo134549;rank=4 scaffold_32 . exon 418166 418748 . - . ID=Physo134549.4;Parent=Physo134549;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 418831 418895 . - 0 ID=Physo134549;Parent=Physo134549;rank=3 scaffold_32 . exon 418831 418895 . - . ID=Physo134549.3;Parent=Physo134549;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_32 . CDS 418973 419026 . - 0 ID=Physo134549;Parent=Physo134549;rank=2 scaffold_32 . exon 418973 419026 . - . ID=Physo134549.2;Parent=Physo134549;constitutive=1;rank=2 scaffold_32 . CDS 419129 419140 . - 0 ID=Physo134549;Parent=Physo134549;rank=1 scaffold_32 . exon 419129 419140 . - . ID=Physo134549.1;Parent=Physo134549;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 419910 422200 . + . ID=Physo134550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320121;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 419910 422200 . + . ID=Physo134550;Parent=Physo134550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 419910 420184 . + 0 ID=Physo134550;Parent=Physo134550;rank=1 scaffold_32 . exon 419910 420184 . + . ID=Physo134550.1;Parent=Physo134550;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 420254 420337 . + 0 ID=Physo134550;Parent=Physo134550;rank=2 scaffold_32 . exon 420254 420337 . + . ID=Physo134550.2;Parent=Physo134550;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_32 . CDS 420410 420475 . + 0 ID=Physo134550;Parent=Physo134550;rank=3 scaffold_32 . exon 420410 420475 . + . ID=Physo134550.3;Parent=Physo134550;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_32 . CDS 420565 420630 . + 0 ID=Physo134550;Parent=Physo134550;rank=4 scaffold_32 . exon 420565 420630 . + . ID=Physo134550.4;Parent=Physo134550;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_32 . CDS 420703 420777 . + 0 ID=Physo134550;Parent=Physo134550;rank=5 scaffold_32 . exon 420703 420777 . + . ID=Physo134550.5;Parent=Physo134550;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_32 . CDS 421075 422200 . + 0 ID=Physo134550;Parent=Physo134550;rank=6 scaffold_32 . exon 421075 422200 . + . ID=Physo134550.6;Parent=Physo134550;constitutive=1;ensembl_phase=2;rank=6 scaffold_32 ensembl protein_coding_gene 422745 425390 . - . ID=Physo134551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320122;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 422745 425390 . - . ID=Physo134551;Parent=Physo134551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 422745 425390 . - 0 ID=Physo134551;Parent=Physo134551;rank=1 scaffold_32 . exon 422745 425390 . - . ID=Physo134551.1;Parent=Physo134551;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 427552 430398 . + . ID=Physo134553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320124;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 427552 430398 . + . ID=Physo134553;Parent=Physo134553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 427552 427726 . + 0 ID=Physo134553;Parent=Physo134553;rank=1 scaffold_32 . exon 427552 427726 . + . ID=Physo134553.1;Parent=Physo134553;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 427922 428037 . + 0 ID=Physo134553;Parent=Physo134553;rank=2 scaffold_32 . CDS 428201 428390 . + 0 ID=Physo134553;Parent=Physo134553;rank=3 scaffold_32 . CDS 428763 429465 . + 0 ID=Physo134553;Parent=Physo134553;rank=4 scaffold_32 . CDS 429509 429956 . + 0 ID=Physo134553;Parent=Physo134553;rank=5 scaffold_32 . CDS 430045 430398 . + 0 ID=Physo134553;Parent=Physo134553;rank=6 scaffold_32 ensembl protein_coding_gene 426252 427406 . - . ID=Physo156986;biotype=protein_coding;external_name=C_scaffold_32000037;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 426252 427406 . - . ID=Physo156986;Parent=Physo156986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 426252 427118 . - 0 ID=Physo156986;Parent=Physo156986;rank=2 scaffold_32 . exon 426252 427118 . - . ID=Physo156986.2;Parent=Physo156986;constitutive=1;rank=2 scaffold_32 . CDS 427143 427406 . - 0 ID=Physo156986;Parent=Physo156986;rank=1 scaffold_32 . exon 427143 427406 . - . ID=Physo156986.1;Parent=Physo156986;constitutive=1;rank=1 scaffold_32 . repeat_region 433552 433609 . ? . description=dust scaffold_32 . exon 427922 428037 . + . ID=Physo134553.2;Parent=Physo134553;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . exon 428201 428390 . + . ID=Physo134553.3;Parent=Physo134553;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . exon 428763 429465 . + . ID=Physo134553.4;Parent=Physo134553;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_32 . exon 429509 429956 . + . ID=Physo134553.5;Parent=Physo134553;constitutive=1;ensembl_phase=2;rank=5 scaffold_32 . exon 430045 430398 . + . ID=Physo134553.6;Parent=Physo134553;constitutive=1;rank=6 scaffold_32 ensembl protein_coding_gene 430851 433079 . - . ID=Physo134554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320125;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 430851 433079 . - . ID=Physo134554;Parent=Physo134554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 430851 432901 . - 0 ID=Physo134554;Parent=Physo134554;rank=2 scaffold_32 . exon 430851 432901 . - . ID=Physo134554.2;Parent=Physo134554;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 432977 433079 . - 0 ID=Physo134554;Parent=Physo134554;rank=1 scaffold_32 . exon 432977 433079 . - . ID=Physo134554.1;Parent=Physo134554;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 433539 437828 . + . ID=Physo134555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320126;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 433539 437828 . + . ID=Physo134555;Parent=Physo134555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 433539 435617 . + 0 ID=Physo134555;Parent=Physo134555;rank=1 scaffold_32 . exon 433539 435617 . + . ID=Physo134555.1;Parent=Physo134555;constitutive=1;rank=1 scaffold_32 . CDS 435753 437702 . + 0 ID=Physo134555;Parent=Physo134555;rank=2 scaffold_32 . exon 435753 437702 . + . ID=Physo134555.2;Parent=Physo134555;constitutive=1;rank=2 scaffold_32 . CDS 437778 437828 . + 0 ID=Physo134555;Parent=Physo134555;rank=3 scaffold_32 . biological_region 445954 445960 0.999 - . logic_name=eponine scaffold_32 . exon 437778 437828 . + . ID=Physo134555.3;Parent=Physo134555;constitutive=1;rank=3 scaffold_32 ensembl protein_coding_gene 438613 440311 . - . ID=Physo134556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320127;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 438613 440311 . - . ID=Physo134556;Parent=Physo134556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 438613 438755 . - 0 ID=Physo134556;Parent=Physo134556;rank=2 scaffold_32 . exon 438613 438755 . - . ID=Physo134556.2;Parent=Physo134556;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 438931 440311 . - 0 ID=Physo134556;Parent=Physo134556;rank=1 scaffold_32 . exon 438931 440311 . - . ID=Physo134556.1;Parent=Physo134556;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 440916 442904 . + . ID=Physo134557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320128;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 440916 442904 . + . ID=Physo134557;Parent=Physo134557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 440916 441700 . + 0 ID=Physo134557;Parent=Physo134557;rank=1 scaffold_32 . exon 440916 441700 . + . ID=Physo134557.1;Parent=Physo134557;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 441857 442013 . + 0 ID=Physo134557;Parent=Physo134557;rank=2 scaffold_32 . exon 441857 442013 . + . ID=Physo134557.2;Parent=Physo134557;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 442371 442904 . + 0 ID=Physo134557;Parent=Physo134557;rank=3 scaffold_32 . exon 442371 442904 . + . ID=Physo134557.3;Parent=Physo134557;constitutive=1;rank=3 scaffold_32 ensembl protein_coding_gene 443023 443564 . + . ID=Physo134558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320129;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 443023 443564 . + . ID=Physo134558;Parent=Physo134558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 443023 443564 . + . ID=Physo134558.1;Parent=Physo134558;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 443025 443489 . + 0 ID=Physo134558;Parent=Physo134558;rank=1 scaffold_32 ensembl protein_coding_gene 443877 448691 . - . ID=Physo134559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320130;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 443877 448691 . - . ID=Physo134559;Parent=Physo134559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 443877 444152 . - 0 ID=Physo134559;Parent=Physo134559;rank=3 scaffold_32 . exon 443877 444152 . - . ID=Physo134559.3;Parent=Physo134559;constitutive=1;rank=3 scaffold_32 . CDS 444237 446163 . - 0 ID=Physo134559;Parent=Physo134559;rank=2 scaffold_32 . exon 444237 446163 . - . ID=Physo134559.2;Parent=Physo134559;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 446326 448691 . - 0 ID=Physo134559;Parent=Physo134559;rank=1 scaffold_32 . exon 446326 448691 . - . ID=Physo134559.1;Parent=Physo134559;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . repeat_region 451933 451957 . ? . description=dust scaffold_32 . repeat_region 451933 451957 . ? . description=trf scaffold_32 ensembl protein_coding_gene 449531 450998 . - . ID=Physo134560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320131;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 449531 450998 . - . ID=Physo134560;Parent=Physo134560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 449531 450998 . - . ID=Physo134560.1;Parent=Physo134560;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_32 . CDS 449742 450998 . - 0 ID=Physo134560;Parent=Physo134560;rank=1 scaffold_32 ensembl protein_coding_gene 451877 453535 . + . ID=Physo134561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320132;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 451877 453535 . + . ID=Physo134561;Parent=Physo134561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 451877 453535 . + 0 ID=Physo134561;Parent=Physo134561;rank=1 scaffold_32 . exon 451877 453535 . + . ID=Physo134561.1;Parent=Physo134561;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 453606 454895 . - . ID=Physo134562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320133;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 453606 454895 . - . ID=Physo134562;Parent=Physo134562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 453606 453652 . - 0 ID=Physo134562;Parent=Physo134562;rank=2 scaffold_32 . exon 453606 453652 . - . ID=Physo134562.2;Parent=Physo134562;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . CDS 453974 454895 . - 0 ID=Physo134562;Parent=Physo134562;rank=1 scaffold_32 . exon 453974 454895 . - . ID=Physo134562.1;Parent=Physo134562;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 455232 457931 . + . ID=Physo134563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320134;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 455232 457931 . + . ID=Physo134563;Parent=Physo134563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 455232 455254 . + 0 ID=Physo134563;Parent=Physo134563;rank=1 scaffold_32 . exon 455232 455254 . + . ID=Physo134563.1;Parent=Physo134563;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 455301 455388 . + 0 ID=Physo134563;Parent=Physo134563;rank=2 scaffold_32 . exon 455301 455388 . + . ID=Physo134563.2;Parent=Physo134563;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 455476 455862 . + 0 ID=Physo134563;Parent=Physo134563;rank=3 scaffold_32 . exon 455476 455862 . + . ID=Physo134563.3;Parent=Physo134563;constitutive=1;rank=3 scaffold_32 . CDS 456160 456273 . + 0 ID=Physo134563;Parent=Physo134563;rank=4 scaffold_32 . exon 456160 456273 . + . ID=Physo134563.4;Parent=Physo134563;constitutive=1;rank=4 scaffold_32 . CDS 456484 457551 . + 0 ID=Physo134563;Parent=Physo134563;rank=5 scaffold_32 . exon 456484 457551 . + . ID=Physo134563.5;Parent=Physo134563;constitutive=1;rank=5 scaffold_32 . CDS 457659 457931 . + 0 ID=Physo134563;Parent=Physo134563;rank=6 scaffold_32 . biological_region 460955 460960 0.999 - . logic_name=eponine scaffold_32 . biological_region 464050 464056 0.999 + . logic_name=eponine scaffold_32 . exon 457659 457931 . + . ID=Physo134563.6;Parent=Physo134563;constitutive=1;rank=6 scaffold_32 ensembl protein_coding_gene 458467 460290 . + . ID=Physo134564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320135;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 458467 460290 . + . ID=Physo134564;Parent=Physo134564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 458467 460290 . + 0 ID=Physo134564;Parent=Physo134564;rank=1 scaffold_32 . exon 458467 460290 . + . ID=Physo134564.1;Parent=Physo134564;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 460816 462651 . + . ID=Physo134565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320136;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 460816 462651 . + . ID=Physo134565;Parent=Physo134565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 460816 462651 . + 0 ID=Physo134565;Parent=Physo134565;rank=1 scaffold_32 . exon 460816 462651 . + . ID=Physo134565.1;Parent=Physo134565;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 462765 464474 . - . ID=Physo134566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320137;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 462765 464474 . - . ID=Physo134566;Parent=Physo134566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 462765 464474 . - 0 ID=Physo134566;Parent=Physo134566;rank=1 scaffold_32 . exon 462765 464474 . - . ID=Physo134566.1;Parent=Physo134566;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 464717 466267 . + . ID=Physo134567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320138;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 464717 466267 . + . ID=Physo134567;Parent=Physo134567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 464717 466267 . + 0 ID=Physo134567;Parent=Physo134567;rank=1 scaffold_32 . exon 464717 466267 . + . ID=Physo134567.1;Parent=Physo134567;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 471233 473721 . + . ID=Physo134569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320140;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 471233 473721 . + . ID=Physo134569;Parent=Physo134569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 471233 473547 . + 0 ID=Physo134569;Parent=Physo134569;rank=1 scaffold_32 . exon 471233 473547 . + . ID=Physo134569.1;Parent=Physo134569;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 473676 473721 . + 0 ID=Physo134569;Parent=Physo134569;rank=2 scaffold_32 . exon 473676 473721 . + . ID=Physo134569.2;Parent=Physo134569;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 ensembl protein_coding_gene 475520 477358 . - . ID=Physo134570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320141;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 475520 477358 . - . ID=Physo134570;Parent=Physo134570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 475520 477358 . - 0 ID=Physo134570;Parent=Physo134570;rank=1 scaffold_32 . exon 475520 477358 . - . ID=Physo134570.1;Parent=Physo134570;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 468555 470968 . + . ID=Physo156993;biotype=protein_coding;external_name=C_scaffold_32000044;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 468555 470968 . + . ID=Physo156993;Parent=Physo156993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 468555 468770 . + 0 ID=Physo156993;Parent=Physo156993;rank=1 scaffold_32 . exon 468555 468770 . + . ID=Physo156993.1;Parent=Physo156993;constitutive=1;rank=1 scaffold_32 . CDS 468799 469058 . + 0 ID=Physo156993;Parent=Physo156993;rank=2 scaffold_32 . exon 468799 469058 . + . ID=Physo156993.2;Parent=Physo156993;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 469110 469483 . + 0 ID=Physo156993;Parent=Physo156993;rank=3 scaffold_32 . exon 469110 469483 . + . ID=Physo156993.3;Parent=Physo156993;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 469714 470027 . + 0 ID=Physo156993;Parent=Physo156993;rank=4 scaffold_32 . exon 469714 470027 . + . ID=Physo156993.4;Parent=Physo156993;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 470052 470342 . + 0 ID=Physo156993;Parent=Physo156993;rank=5 scaffold_32 . exon 470052 470342 . + . ID=Physo156993.5;Parent=Physo156993;constitutive=1;rank=5 scaffold_32 . CDS 470393 470968 . + 0 ID=Physo156993;Parent=Physo156993;rank=6 scaffold_32 . exon 470393 470968 . + . ID=Physo156993.6;Parent=Physo156993;constitutive=1;rank=6 scaffold_32 . biological_region 477441 477442 0.999 + . logic_name=eponine scaffold_32 . biological_region 477481 477484 0.999 - . logic_name=eponine scaffold_32 . biological_region 477656 477661 0.999 + . logic_name=eponine scaffold_32 . biological_region 477750 477755 0.999 + . logic_name=eponine scaffold_32 . biological_region 477765 477766 0.999 + . logic_name=eponine scaffold_32 . biological_region 477791 477795 0.999 + . logic_name=eponine scaffold_32 . biological_region 477811 477813 0.999 - . logic_name=eponine scaffold_32 . biological_region 477851 477854 0.999 - . logic_name=eponine scaffold_32 . biological_region 477864 477867 0.999 + . logic_name=eponine scaffold_32 . biological_region 477869 477875 0.999 - . logic_name=eponine scaffold_32 . biological_region 477882 477889 0.999 - . logic_name=eponine scaffold_32 . biological_region 477909 477911 0.999 - . logic_name=eponine scaffold_32 . biological_region 477967 477969 0.999 + . logic_name=eponine scaffold_32 . biological_region 479040 479044 0.999 + . logic_name=eponine scaffold_32 . biological_region 479058 479059 0.999 + . logic_name=eponine scaffold_32 . biological_region 479066 479071 0.999 + . logic_name=eponine scaffold_32 . biological_region 479110 479111 0.999 - . logic_name=eponine scaffold_32 . biological_region 479125 479132 0.999 - . logic_name=eponine scaffold_32 . biological_region 479433 479433 0.999 - . logic_name=eponine scaffold_32 . biological_region 479748 479748 0.999 + . logic_name=eponine scaffold_32 . biological_region 483018 483021 0.999 + . logic_name=eponine scaffold_32 . biological_region 483078 483080 0.999 + . logic_name=eponine scaffold_32 . biological_region 483236 483240 0.999 - . logic_name=eponine scaffold_32 . repeat_region 483449 483474 . ? . description=trf scaffold_32 . repeat_region 483449 483481 . ? . description=dust scaffold_32 . biological_region 483542 483542 0.999 - . logic_name=eponine scaffold_32 . biological_region 483649 483653 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 479498 481999 . + . ID=Physo134571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320142;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 479498 481999 . + . ID=Physo134571;Parent=Physo134571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 479498 479500 . + 0 ID=Physo134571;Parent=Physo134571;rank=1 scaffold_32 . exon 479498 479500 . + . ID=Physo134571.1;Parent=Physo134571;constitutive=1;rank=1 scaffold_32 . CDS 479579 481999 . + 0 ID=Physo134571;Parent=Physo134571;rank=2 scaffold_32 . exon 479579 481999 . + . ID=Physo134571.2;Parent=Physo134571;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 483432 484283 . + . ID=Physo134573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320144;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 483432 484283 . + . ID=Physo134573;Parent=Physo134573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 483432 484283 . + 0 ID=Physo134573;Parent=Physo134573;rank=1 scaffold_32 . exon 483432 484283 . + . ID=Physo134573.1;Parent=Physo134573;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 486308 494035 . - . ID=Physo134574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320145;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 486308 494035 . - . ID=Physo134574;Parent=Physo134574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 486308 486343 . - 0 ID=Physo134574;Parent=Physo134574;rank=3 scaffold_32 . exon 486308 486343 . - . ID=Physo134574.3;Parent=Physo134574;constitutive=1;rank=3 scaffold_32 . CDS 486434 493043 . - 0 ID=Physo134574;Parent=Physo134574;rank=2 scaffold_32 . exon 486434 493043 . - . ID=Physo134574.2;Parent=Physo134574;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 493140 494035 . - 0 ID=Physo134574;Parent=Physo134574;rank=1 scaffold_32 ensembl protein_coding_gene 482098 483165 . - . ID=Physo156997;biotype=protein_coding;external_name=C_scaffold_32000048;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 482098 483165 . - . ID=Physo156997;Parent=Physo156997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 482098 483165 . - 0 ID=Physo156997;Parent=Physo156997;rank=1 scaffold_32 . exon 482098 483165 . - . ID=Physo156997.1;Parent=Physo156997;constitutive=1;rank=1 scaffold_32 . repeat_region 494774 494958 . + . description=Polinton-1_PI scaffold_32 . exon 493140 494035 . - . ID=Physo134574.1;Parent=Physo134574;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 495013 503930 . + . ID=Physo134575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320146;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 495013 503930 . + . ID=Physo134575;Parent=Physo134575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 495013 495227 . + 0 ID=Physo134575;Parent=Physo134575;rank=1 scaffold_32 . exon 495013 495227 . + . ID=Physo134575.1;Parent=Physo134575;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 495495 495658 . + 0 ID=Physo134575;Parent=Physo134575;rank=2 scaffold_32 . exon 495495 495658 . + . ID=Physo134575.2;Parent=Physo134575;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 495691 496217 . + 0 ID=Physo134575;Parent=Physo134575;rank=3 scaffold_32 . exon 495691 496217 . + . ID=Physo134575.3;Parent=Physo134575;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 496266 496397 . + 0 ID=Physo134575;Parent=Physo134575;rank=4 scaffold_32 . exon 496266 496397 . + . ID=Physo134575.4;Parent=Physo134575;constitutive=1;rank=4 scaffold_32 . CDS 496556 496864 . + 0 ID=Physo134575;Parent=Physo134575;rank=5 scaffold_32 . exon 496556 496864 . + . ID=Physo134575.5;Parent=Physo134575;constitutive=1;rank=5 scaffold_32 . CDS 497346 497533 . + 0 ID=Physo134575;Parent=Physo134575;rank=6 scaffold_32 . CDS 497624 500523 . + 0 ID=Physo134575;Parent=Physo134575;rank=7 scaffold_32 . CDS 501239 501861 . + 0 ID=Physo134575;Parent=Physo134575;rank=8 scaffold_32 . CDS 502137 502820 . + 0 ID=Physo134575;Parent=Physo134575;rank=9 scaffold_32 . CDS 503057 503859 . + 0 ID=Physo134575;Parent=Physo134575;rank=10 scaffold_32 . CDS 503888 503930 . + 0 ID=Physo134575;Parent=Physo134575;rank=11 scaffold_32 . biological_region 497998 498001 0.999 + . logic_name=eponine scaffold_32 . biological_region 498035 498039 0.999 - . logic_name=eponine scaffold_32 . biological_region 498555 498562 0.999 - . logic_name=eponine scaffold_32 . repeat_region 502284 502320 . ? . description=trf scaffold_32 . repeat_region 505035 505084 . ? . description=dust scaffold_32 . repeat_region 507066 507115 . ? . description=dust scaffold_32 . exon 497346 497533 . + . ID=Physo134575.6;Parent=Physo134575;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_32 . exon 497624 500523 . + . ID=Physo134575.7;Parent=Physo134575;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_32 . exon 501239 501861 . + . ID=Physo134575.8;Parent=Physo134575;constitutive=1;ensembl_phase=1;rank=8 scaffold_32 . exon 502137 502820 . + . ID=Physo134575.9;Parent=Physo134575;constitutive=1;rank=9 scaffold_32 . exon 503057 503859 . + . ID=Physo134575.10;Parent=Physo134575;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_32 . exon 503888 503930 . + . ID=Physo134575.11;Parent=Physo134575;constitutive=1;ensembl_phase=2;rank=11 scaffold_32 ensembl protein_coding_gene 504940 506993 . - . ID=Physo134576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320147;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 504940 506993 . - . ID=Physo134576;Parent=Physo134576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 504940 504964 . - 0 ID=Physo134576;Parent=Physo134576;rank=2 scaffold_32 . exon 504940 504964 . - . ID=Physo134576.2;Parent=Physo134576;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 505129 506993 . - 0 ID=Physo134576;Parent=Physo134576;rank=1 scaffold_32 . exon 505129 506993 . - . ID=Physo134576.1;Parent=Physo134576;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 508135 509421 . - . ID=Physo134577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320148;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 508135 509421 . - . ID=Physo134577;Parent=Physo134577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 508135 509421 . - 0 ID=Physo134577;Parent=Physo134577;rank=1 scaffold_32 . exon 508135 509421 . - . ID=Physo134577.1;Parent=Physo134577;constitutive=1;rank=1 scaffold_32 . repeat_region 511463 519942 . ? . description=dust scaffold_32 . repeat_region 521534 526158 . ? . description=dust scaffold_32 . biological_region 526269 526270 0.999 - . logic_name=eponine scaffold_32 . biological_region 526507 526507 0.999 + . logic_name=eponine scaffold_32 . repeat_region 530814 530867 . ? . description=trf scaffold_32 ensembl protein_coding_gene 531987 534320 . - . ID=Physo134578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320149;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 531987 534320 . - . ID=Physo134578;Parent=Physo134578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 531987 534248 . - 0 ID=Physo134578;Parent=Physo134578;rank=1 scaffold_32 . exon 531987 534320 . - . ID=Physo134578.1;Parent=Physo134578;constitutive=1;ensembl_phase=-1;rank=1 scaffold_32 . repeat_region 536998 537047 . ? . description=dust scaffold_32 . biological_region 538333 538336 0.999 - . logic_name=eponine scaffold_32 . biological_region 539645 539651 0.999 + . logic_name=eponine scaffold_32 . biological_region 541609 541609 0.999 - . logic_name=eponine scaffold_32 . biological_region 545094 545099 0.999 - . logic_name=eponine scaffold_32 . biological_region 545178 545185 0.999 + . logic_name=eponine scaffold_32 . biological_region 546175 546178 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 537332 539878 . + . ID=Physo134579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320150;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 537332 539878 . + . ID=Physo134579;Parent=Physo134579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 537332 539878 . + . ID=Physo134579.1;Parent=Physo134579;constitutive=1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 537353 539878 . + 0 ID=Physo134579;Parent=Physo134579;rank=1 scaffold_32 ensembl protein_coding_gene 539919 544163 . - . ID=Physo134580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320151;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 539919 544163 . - . ID=Physo134580;Parent=Physo134580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 539919 541676 . - 0 ID=Physo134580;Parent=Physo134580;rank=7 scaffold_32 . exon 539919 541676 . - . ID=Physo134580.7;Parent=Physo134580;constitutive=1;rank=7 scaffold_32 . CDS 541739 542370 . - 0 ID=Physo134580;Parent=Physo134580;rank=6 scaffold_32 . exon 541739 542370 . - . ID=Physo134580.6;Parent=Physo134580;constitutive=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 542555 542978 . - 0 ID=Physo134580;Parent=Physo134580;rank=5 scaffold_32 . exon 542555 542978 . - . ID=Physo134580.5;Parent=Physo134580;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_32 . CDS 543091 543110 . - 0 ID=Physo134580;Parent=Physo134580;rank=4 scaffold_32 . exon 543091 543110 . - . ID=Physo134580.4;Parent=Physo134580;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 543530 543669 . - 0 ID=Physo134580;Parent=Physo134580;rank=3 scaffold_32 . exon 543530 543669 . - . ID=Physo134580.3;Parent=Physo134580;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 543750 543930 . - 0 ID=Physo134580;Parent=Physo134580;rank=2 scaffold_32 . exon 543750 543930 . - . ID=Physo134580.2;Parent=Physo134580;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . CDS 544007 544163 . - 0 ID=Physo134580;Parent=Physo134580;rank=1 scaffold_32 . exon 544007 544163 . - . ID=Physo134580.1;Parent=Physo134580;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 ensembl protein_coding_gene 545696 547020 . - . ID=Physo134581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320152;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 545696 547020 . - . ID=Physo134581;Parent=Physo134581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 545696 545958 . - . ID=Physo134581.2;Parent=Physo134581;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_32 . CDS 545698 545958 . - 0 ID=Physo134581;Parent=Physo134581;rank=2 scaffold_32 . CDS 545983 547020 . - 0 ID=Physo134581;Parent=Physo134581;rank=1 scaffold_32 . exon 545983 547020 . - . ID=Physo134581.1;Parent=Physo134581;constitutive=1;rank=1 scaffold_32 . repeat_region 547401 547441 . ? . description=trf scaffold_32 . repeat_region 552406 552583 . - . description=Polinton-1_PI scaffold_32 . repeat_region 552606 552672 . - . description=Polinton-1_PI scaffold_32 . repeat_region 552696 552826 . - . description=Polinton-1_PI scaffold_32 . repeat_region 552941 553322 . - . description=Polinton-1_PI scaffold_32 . repeat_region 553372 553513 . - . description=Polinton-1_PI scaffold_32 . repeat_region 555611 556659 . - . description=Polinton-1_PI scaffold_32 . repeat_region 556710 558385 . - . description=Polinton-1_PI scaffold_32 ensembl protein_coding_gene 547982 549996 . - . ID=Physo134582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320153;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 547982 549996 . - . ID=Physo134582;Parent=Physo134582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 547982 548228 . - 0 ID=Physo134582;Parent=Physo134582;rank=4 scaffold_32 . exon 547982 548228 . - . ID=Physo134582.4;Parent=Physo134582;constitutive=1;ensembl_phase=2;rank=4 scaffold_32 . CDS 548249 548500 . - 0 ID=Physo134582;Parent=Physo134582;rank=3 scaffold_32 . exon 548249 548500 . - . ID=Physo134582.3;Parent=Physo134582;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_32 . CDS 548810 549254 . - 0 ID=Physo134582;Parent=Physo134582;rank=2 scaffold_32 . exon 548810 549254 . - . ID=Physo134582.2;Parent=Physo134582;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . CDS 549426 549996 . - 0 ID=Physo134582;Parent=Physo134582;rank=1 scaffold_32 . exon 549426 549996 . - . ID=Physo134582.1;Parent=Physo134582;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . biological_region 563431 563432 0.999 - . logic_name=eponine scaffold_32 . biological_region 565733 565734 0.999 - . logic_name=eponine scaffold_32 . repeat_region 565807 565814 . ? . description=dust scaffold_32 ensembl protein_coding_gene 560710 561456 . - . ID=Physo134583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320154;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 560710 561456 . - . ID=Physo134583;Parent=Physo134583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 560710 561456 . - 0 ID=Physo134583;Parent=Physo134583;rank=1 scaffold_32 . exon 560710 561456 . - . ID=Physo134583.1;Parent=Physo134583;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 562023 564008 . - . ID=Physo134584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320155;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 562023 564008 . - . ID=Physo134584;Parent=Physo134584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 562023 562344 . - . ID=Physo134584.4;Parent=Physo134584;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_32 . CDS 562129 562344 . - 0 ID=Physo134584;Parent=Physo134584;rank=3 scaffold_32 . CDS 562401 562891 . - 0 ID=Physo134584;Parent=Physo134584;rank=2 scaffold_32 . exon 562401 562891 . - . ID=Physo134584.3;Parent=Physo134584;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 562964 563546 . - 0 ID=Physo134584;Parent=Physo134584;rank=1 scaffold_32 . exon 562964 563562 . - . ID=Physo134584.2;Parent=Physo134584;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_32 . exon 564002 564008 . - . ID=Physo134584.1;Parent=Physo134584;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_32 . repeat_region 571033 571068 . ? . description=trf scaffold_32 . repeat_region 572250 572282 . ? . description=trf scaffold_32 ensembl protein_coding_gene 571579 573079 . - . ID=Physo134585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320156;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 571579 573079 . - . ID=Physo134585;Parent=Physo134585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 571579 572523 . - 0 ID=Physo134585;Parent=Physo134585;rank=2 scaffold_32 . exon 571579 572523 . - . ID=Physo134585.2;Parent=Physo134585;constitutive=1;rank=2 scaffold_32 . CDS 572597 573079 . - 0 ID=Physo134585;Parent=Physo134585;rank=1 scaffold_32 . exon 572597 573079 . - . ID=Physo134585.1;Parent=Physo134585;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 575093 575470 . + . ID=Physo156999;biotype=protein_coding;external_name=C_scaffold_32000050;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 575093 575470 . + . ID=Physo156999;Parent=Physo156999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 575093 575470 . + 0 ID=Physo156999;Parent=Physo156999;rank=1 scaffold_32 . exon 575093 575470 . + . ID=Physo156999.1;Parent=Physo156999;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 575764 576731 . + . ID=Physo157001;biotype=protein_coding;external_name=C_scaffold_32000052;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 575764 576731 . + . ID=Physo157001;Parent=Physo157001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 575764 575923 . + 0 ID=Physo157001;Parent=Physo157001;rank=1 scaffold_32 . exon 575764 575923 . + . ID=Physo157001.1;Parent=Physo157001;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 576523 576731 . + 0 ID=Physo157001;Parent=Physo157001;rank=2 scaffold_32 . exon 576523 576731 . + . ID=Physo157001.2;Parent=Physo157001;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 . biological_region 582052 582053 0.999 + . logic_name=eponine scaffold_32 . biological_region 583958 583960 0.999 - . logic_name=eponine scaffold_32 . biological_region 585539 585544 0.999 - . logic_name=eponine scaffold_32 . biological_region 585776 585778 0.999 + . logic_name=eponine scaffold_32 . repeat_region 586099 586108 . ? . description=dust scaffold_32 . biological_region 586319 586321 0.999 - . logic_name=eponine scaffold_32 . biological_region 586374 586378 0.999 + . logic_name=eponine scaffold_32 . biological_region 586724 586726 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 581642 584072 . + . ID=Physo116260;biotype=protein_coding;external_name=estExt_Genewise1.C_320041;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 581642 584072 . + . ID=Physo116260;Parent=Physo116260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 581642 581752 . + . ID=Physo116260.1;Parent=Physo116260;constitutive=1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 581663 581752 . + 0 ID=Physo116260;Parent=Physo116260;rank=1 scaffold_32 . CDS 581820 582531 . + 0 ID=Physo116260;Parent=Physo116260;rank=2 scaffold_32 . exon 581820 582531 . + . ID=Physo116260.2;Parent=Physo116260;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_32 . CDS 582603 583318 . + 0 ID=Physo116260;Parent=Physo116260;rank=3 scaffold_32 . exon 582603 583318 . + . ID=Physo116260.3;Parent=Physo116260;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 583371 583926 . + 0 ID=Physo116260;Parent=Physo116260;rank=4 scaffold_32 . exon 583371 583926 . + . ID=Physo116260.4;Parent=Physo116260;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_32 . CDS 583957 584072 . + 0 ID=Physo116260;Parent=Physo116260;rank=5 scaffold_32 . exon 583957 584072 . + . ID=Physo116260.5;Parent=Physo116260;constitutive=1;ensembl_phase=1;rank=5 scaffold_32 ensembl protein_coding_gene 577688 578789 . + . ID=Physo134587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320158;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 577688 578789 . + . ID=Physo134587;Parent=Physo134587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 577688 578061 . + 0 ID=Physo134587;Parent=Physo134587;rank=1 scaffold_32 . exon 577688 578061 . + . ID=Physo134587.1;Parent=Physo134587;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 578354 578789 . + 0 ID=Physo134587;Parent=Physo134587;rank=2 scaffold_32 . exon 578354 578789 . + . ID=Physo134587.2;Parent=Physo134587;constitutive=1;ensembl_phase=2;rank=2 scaffold_32 ensembl protein_coding_gene 580899 581509 . - . ID=Physo134590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320161;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 580899 581509 . - . ID=Physo134590;Parent=Physo134590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 580899 581033 . - 0 ID=Physo134590;Parent=Physo134590;rank=4 scaffold_32 . exon 580899 581033 . - . ID=Physo134590.4;Parent=Physo134590;constitutive=1;rank=4 scaffold_32 . CDS 581091 581157 . - 0 ID=Physo134590;Parent=Physo134590;rank=3 scaffold_32 . exon 581091 581157 . - . ID=Physo134590.3;Parent=Physo134590;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 581233 581270 . - 0 ID=Physo134590;Parent=Physo134590;rank=2 scaffold_32 . exon 581233 581270 . - . ID=Physo134590.2;Parent=Physo134590;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 581333 581509 . - 0 ID=Physo134590;Parent=Physo134590;rank=1 scaffold_32 . exon 581333 581509 . - . ID=Physo134590.1;Parent=Physo134590;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 579190 580619 . + . ID=Physo157005;biotype=protein_coding;external_name=C_scaffold_32000056;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 579190 580619 . + . ID=Physo157005;Parent=Physo157005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 579190 579459 . + 0 ID=Physo157005;Parent=Physo157005;rank=1 scaffold_32 . exon 579190 579459 . + . ID=Physo157005.1;Parent=Physo157005;constitutive=1;rank=1 scaffold_32 . CDS 579533 579598 . + 0 ID=Physo157005;Parent=Physo157005;rank=2 scaffold_32 . exon 579533 579598 . + . ID=Physo157005.2;Parent=Physo157005;constitutive=1;rank=2 scaffold_32 . CDS 579680 579773 . + 0 ID=Physo157005;Parent=Physo157005;rank=3 scaffold_32 . exon 579680 579773 . + . ID=Physo157005.3;Parent=Physo157005;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . CDS 579850 580018 . + 0 ID=Physo157005;Parent=Physo157005;rank=4 scaffold_32 . exon 579850 580018 . + . ID=Physo157005.4;Parent=Physo157005;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_32 . CDS 580090 580346 . + 0 ID=Physo157005;Parent=Physo157005;rank=5 scaffold_32 . exon 580090 580346 . + . ID=Physo157005.5;Parent=Physo157005;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_32 . CDS 580414 580619 . + 0 ID=Physo157005;Parent=Physo157005;rank=6 scaffold_32 . exon 580414 580619 . + . ID=Physo157005.6;Parent=Physo157005;constitutive=1;ensembl_phase=1;rank=6 scaffold_32 . repeat_region 594327 594373 . ? . description=trf scaffold_32 ensembl protein_coding_gene 592782 594455 . - . ID=Physo116268;biotype=protein_coding;external_name=estExt_Genewise1.C_320049;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 592782 594455 . - . ID=Physo116268;Parent=Physo116268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 592782 594455 . - 0 ID=Physo116268;Parent=Physo116268;rank=1 scaffold_32 . exon 592782 594455 . - . ID=Physo116268.1;Parent=Physo116268;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 587559 592638 . + . ID=Physo134593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320164;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 587559 592638 . + . ID=Physo134593;Parent=Physo134593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 587559 589840 . + 0 ID=Physo134593;Parent=Physo134593;rank=1 scaffold_32 . exon 587559 589840 . + . ID=Physo134593.1;Parent=Physo134593;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 . CDS 589869 589891 . + 0 ID=Physo134593;Parent=Physo134593;rank=2 scaffold_32 . exon 589869 589891 . + . ID=Physo134593.2;Parent=Physo134593;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_32 . CDS 590257 590264 . + 0 ID=Physo134593;Parent=Physo134593;rank=3 scaffold_32 . exon 590257 590264 . + . ID=Physo134593.3;Parent=Physo134593;constitutive=1;ensembl_phase=1;rank=3 scaffold_32 . CDS 590327 590772 . + 0 ID=Physo134593;Parent=Physo134593;rank=4 scaffold_32 . exon 590327 590772 . + . ID=Physo134593.4;Parent=Physo134593;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_32 . CDS 590843 590882 . + 0 ID=Physo134593;Parent=Physo134593;rank=5 scaffold_32 . exon 590843 590882 . + . ID=Physo134593.5;Parent=Physo134593;constitutive=1;ensembl_phase=2;rank=5 scaffold_32 . CDS 590964 591339 . + 0 ID=Physo134593;Parent=Physo134593;rank=6 scaffold_32 . exon 590964 591339 . + . ID=Physo134593.6;Parent=Physo134593;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_32 . CDS 591523 591659 . + 0 ID=Physo134593;Parent=Physo134593;rank=7 scaffold_32 . exon 591523 591659 . + . ID=Physo134593.7;Parent=Physo134593;constitutive=1;ensembl_phase=1;rank=7 scaffold_32 . CDS 591747 592196 . + 0 ID=Physo134593;Parent=Physo134593;rank=8 scaffold_32 . exon 591747 592196 . + . ID=Physo134593.8;Parent=Physo134593;constitutive=1;rank=8 scaffold_32 . CDS 592267 592638 . + 0 ID=Physo134593;Parent=Physo134593;rank=9 scaffold_32 . exon 592267 592638 . + . ID=Physo134593.9;Parent=Physo134593;constitutive=1;rank=9 scaffold_32 . repeat_region 597897 597932 . ? . description=dust scaffold_32 . biological_region 603579 603582 0.999 - . logic_name=eponine scaffold_32 . repeat_region 604153 604160 . ? . description=dust scaffold_32 . biological_region 605803 605807 0.999 - . logic_name=eponine scaffold_32 . biological_region 606191 606194 0.999 + . logic_name=eponine scaffold_32 ensembl protein_coding_gene 598203 598812 . - . ID=Physo134595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320166;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 598203 598812 . - . ID=Physo134595;Parent=Physo134595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 598203 598211 . - 0 ID=Physo134595;Parent=Physo134595;rank=3 scaffold_32 . exon 598203 598211 . - . ID=Physo134595.3;Parent=Physo134595;constitutive=1;rank=3 scaffold_32 . CDS 598404 598643 . - 0 ID=Physo134595;Parent=Physo134595;rank=2 scaffold_32 . exon 598404 598643 . - . ID=Physo134595.2;Parent=Physo134595;constitutive=1;rank=2 scaffold_32 . CDS 598744 598812 . - 0 ID=Physo134595;Parent=Physo134595;rank=1 scaffold_32 . exon 598744 598812 . - . ID=Physo134595.1;Parent=Physo134595;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 603044 604131 . + . ID=Physo134596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320167;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 603044 604131 . + . ID=Physo134596;Parent=Physo134596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 603044 603319 . + 0 ID=Physo134596;Parent=Physo134596;rank=1 scaffold_32 . exon 603044 603319 . + . ID=Physo134596.1;Parent=Physo134596;constitutive=1;rank=1 scaffold_32 . CDS 603349 604131 . + 0 ID=Physo134596;Parent=Physo134596;rank=2 scaffold_32 . exon 603349 604131 . + . ID=Physo134596.2;Parent=Physo134596;constitutive=1;rank=2 scaffold_32 ensembl protein_coding_gene 605984 606560 . + . ID=Physo134597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320168;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 605984 606560 . + . ID=Physo134597;Parent=Physo134597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 605984 606163 . + 0 ID=Physo134597;Parent=Physo134597;rank=1 scaffold_32 . exon 605984 606163 . + . ID=Physo134597.1;Parent=Physo134597;constitutive=1;rank=1 scaffold_32 . CDS 606225 606560 . + 0 ID=Physo134597;Parent=Physo134597;rank=2 scaffold_32 . exon 606225 606560 . + . ID=Physo134597.2;Parent=Physo134597;constitutive=1;rank=2 scaffold_32 . repeat_region 611070 611151 . + . description=(CTG)n scaffold_32 . repeat_region 611727 611774 . ? . description=trf scaffold_32 . repeat_region 614708 614736 . ? . description=trf scaffold_32 ensembl protein_coding_gene 607449 608780 . + . ID=Physo134598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320169;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 607449 608780 . + . ID=Physo134598;Parent=Physo134598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 607449 608780 . + . ID=Physo134598.1;Parent=Physo134598;constitutive=1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 607482 608780 . + 0 ID=Physo134598;Parent=Physo134598;rank=1 scaffold_32 ensembl protein_coding_gene 609001 612246 . - . ID=Physo134599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320170;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 609001 612246 . - . ID=Physo134599;Parent=Physo134599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 609001 612246 . - 0 ID=Physo134599;Parent=Physo134599;rank=1 scaffold_32 . exon 609001 612246 . - . ID=Physo134599.1;Parent=Physo134599;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 612746 614745 . - . ID=Physo134600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320171;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 612746 614745 . - . ID=Physo134600;Parent=Physo134600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 612746 612867 . - 0 ID=Physo134600;Parent=Physo134600;rank=5 scaffold_32 . exon 612746 612867 . - . ID=Physo134600.5;Parent=Physo134600;constitutive=1;ensembl_phase=1;rank=5 scaffold_32 . CDS 612937 613095 . - 0 ID=Physo134600;Parent=Physo134600;rank=4 scaffold_32 . exon 612937 613095 . - . ID=Physo134600.4;Parent=Physo134600;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 613170 613624 . - 0 ID=Physo134600;Parent=Physo134600;rank=3 scaffold_32 . exon 613170 613624 . - . ID=Physo134600.3;Parent=Physo134600;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 613713 613850 . - 0 ID=Physo134600;Parent=Physo134600;rank=2 scaffold_32 . exon 613713 613850 . - . ID=Physo134600.2;Parent=Physo134600;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_32 . CDS 613874 614745 . - 0 ID=Physo134600;Parent=Physo134600;rank=1 scaffold_32 . exon 613874 614745 . - . ID=Physo134600.1;Parent=Physo134600;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_32 ensembl protein_coding_gene 616574 617846 . - . ID=Physo134601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320172;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 616574 617846 . - . ID=Physo134601;Parent=Physo134601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 616574 617846 . - . ID=Physo134601.1;Parent=Physo134601;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_32 . CDS 616683 617846 . - 0 ID=Physo134601;Parent=Physo134601;rank=1 scaffold_32 . biological_region 617041 617043 0.999 - . logic_name=eponine scaffold_32 . biological_region 617466 617467 0.999 + . logic_name=eponine scaffold_32 . biological_region 617510 617513 0.999 + . logic_name=eponine scaffold_32 . biological_region 617532 617533 0.999 + . logic_name=eponine scaffold_32 . biological_region 617550 617557 0.999 - . logic_name=eponine scaffold_32 . biological_region 617573 617573 0.999 + . logic_name=eponine scaffold_32 . biological_region 617588 617595 0.999 - . logic_name=eponine scaffold_32 . biological_region 617635 617638 0.999 - . logic_name=eponine scaffold_32 . biological_region 617645 617650 0.999 + . logic_name=eponine scaffold_32 . biological_region 617673 617674 0.999 + . logic_name=eponine scaffold_32 . biological_region 617681 617686 0.999 - . logic_name=eponine scaffold_32 . biological_region 620106 620109 0.999 + . logic_name=eponine scaffold_32 . biological_region 621974 621983 0.999 - . logic_name=eponine scaffold_32 . biological_region 621988 621994 0.999 + . logic_name=eponine scaffold_32 . repeat_region 622279 622302 . ? . description=dust scaffold_32 . biological_region 622430 622431 0.999 - . logic_name=eponine scaffold_32 . biological_region 622483 622487 0.999 + . logic_name=eponine scaffold_32 . biological_region 623457 623457 0.999 - . logic_name=eponine scaffold_32 . biological_region 623950 623950 0.999 + . logic_name=eponine scaffold_32 . biological_region 624024 624026 0.999 - . logic_name=eponine scaffold_32 . biological_region 624199 624203 0.999 - . logic_name=eponine scaffold_32 . repeat_region 625049 625219 . - . description=Polinton-1_PI scaffold_32 . repeat_region 625250 625316 . - . description=Polinton-1_PI scaffold_32 . repeat_region 626485 626971 . + . description=Polinton-1_PI scaffold_32 ensembl protein_coding_gene 621751 622903 . + . ID=Physo134603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320174;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 621751 622903 . + . ID=Physo134603;Parent=Physo134603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 621751 622842 . + 0 ID=Physo134603;Parent=Physo134603;rank=1 scaffold_32 . exon 621751 622903 . + . ID=Physo134603.1;Parent=Physo134603;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_32 ensembl protein_coding_gene 622996 624297 . - . ID=Physo134604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320175;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 622996 624297 . - . ID=Physo134604;Parent=Physo134604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 622996 624297 . - 0 ID=Physo134604;Parent=Physo134604;rank=1 scaffold_32 . exon 622996 624297 . - . ID=Physo134604.1;Parent=Physo134604;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 626146 627534 . + . ID=Physo134605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320176;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 626146 627534 . + . ID=Physo134605;Parent=Physo134605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . exon 626146 626152 . + . ID=Physo134605.1;Parent=Physo134605;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_32 . CDS 626605 626992 . + 0 ID=Physo134605;Parent=Physo134605;rank=1 scaffold_32 . CDS 627081 627199 . + 0 ID=Physo134605;Parent=Physo134605;rank=2 scaffold_32 ensembl protein_coding_gene 618819 619976 . + . ID=Physo157007;biotype=protein_coding;external_name=C_scaffold_32000058;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 618819 619976 . + . ID=Physo157007;Parent=Physo157007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 618819 619302 . + 0 ID=Physo157007;Parent=Physo157007;rank=1 scaffold_32 . exon 618819 619302 . + . ID=Physo157007.1;Parent=Physo157007;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 619453 619976 . + 0 ID=Physo157007;Parent=Physo157007;rank=2 scaffold_32 . exon 619453 619976 . + . ID=Physo157007.2;Parent=Physo157007;constitutive=1;ensembl_phase=1;rank=2 scaffold_32 ensembl protein_coding_gene 620215 621274 . - . ID=Physo157008;biotype=protein_coding;external_name=C_scaffold_32000059;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 620215 621274 . - . ID=Physo157008;Parent=Physo157008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 620215 620225 . - 0 ID=Physo157008;Parent=Physo157008;rank=6 scaffold_32 . exon 620215 620225 . - . ID=Physo157008.6;Parent=Physo157008;constitutive=1;ensembl_phase=1;rank=6 scaffold_32 . CDS 620306 620458 . - 0 ID=Physo157008;Parent=Physo157008;rank=5 scaffold_32 . exon 620306 620458 . - . ID=Physo157008.5;Parent=Physo157008;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_32 . CDS 620572 620659 . - 0 ID=Physo157008;Parent=Physo157008;rank=4 scaffold_32 . exon 620572 620659 . - . ID=Physo157008.4;Parent=Physo157008;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_32 . CDS 620777 620909 . - 0 ID=Physo157008;Parent=Physo157008;rank=3 scaffold_32 . exon 620777 620909 . - . ID=Physo157008.3;Parent=Physo157008;constitutive=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 620977 621113 . - 0 ID=Physo157008;Parent=Physo157008;rank=2 scaffold_32 . exon 620977 621113 . - . ID=Physo157008.2;Parent=Physo157008;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_32 . CDS 621191 621274 . - 0 ID=Physo157008;Parent=Physo157008;rank=1 scaffold_32 . exon 621191 621274 . - . ID=Physo157008.1;Parent=Physo157008;constitutive=1;rank=1 scaffold_32 . exon 626589 626992 . + . ID=Physo134605.2;Parent=Physo134605;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_32 . exon 627081 627534 . + . ID=Physo134605.3;Parent=Physo134605;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_32 . repeat_region 634637 640138 . ? . description=dust scaffold_32 . repeat_region 640140 641214 . + . description=Polinton-1_PI scaffold_32 . repeat_region 641222 641271 . ? . description=dust scaffold_32 . repeat_region 642011 642964 . ? . description=dust scaffold_32 . repeat_region 644562 644611 . ? . description=dust scaffold_32 . repeat_region 646105 646154 . ? . description=dust scaffold_32 ensembl protein_coding_gene 646230 649194 . - . ID=Physo134606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320177;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 646230 649194 . - . ID=Physo134606;Parent=Physo134606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 646230 646714 . - 0 ID=Physo134606;Parent=Physo134606;rank=4 scaffold_32 . exon 646230 646714 . - . ID=Physo134606.4;Parent=Physo134606;constitutive=1;ensembl_phase=1;rank=4 scaffold_32 . CDS 646741 647326 . - 0 ID=Physo134606;Parent=Physo134606;rank=3 scaffold_32 . CDS 647396 648028 . - 0 ID=Physo134606;Parent=Physo134606;rank=2 scaffold_32 . CDS 648103 649194 . - 0 ID=Physo134606;Parent=Physo134606;rank=1 scaffold_32 . biological_region 648567 648571 0.999 + . logic_name=eponine scaffold_32 . exon 646741 647326 . - . ID=Physo134606.3;Parent=Physo134606;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_32 . exon 647396 648028 . - . ID=Physo134606.2;Parent=Physo134606;constitutive=1;rank=2 scaffold_32 . exon 648103 649194 . - . ID=Physo134606.1;Parent=Physo134606;constitutive=1;rank=1 scaffold_32 . repeat_region 656408 656415 . ? . description=dust scaffold_32 . repeat_region 656539 656547 . ? . description=dust scaffold_32 . repeat_region 661175 661288 . ? . description=dust scaffold_32 . repeat_region 662269 662277 . ? . description=dust scaffold_32 ensembl protein_coding_gene 663460 665856 . + . ID=Physo134607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320178;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 663460 665856 . + . ID=Physo134607;Parent=Physo134607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 663460 663645 . + 0 ID=Physo134607;Parent=Physo134607;rank=1 scaffold_32 . exon 663460 663645 . + . ID=Physo134607.1;Parent=Physo134607;constitutive=1;rank=1 scaffold_32 . CDS 663721 663894 . + 0 ID=Physo134607;Parent=Physo134607;rank=2 scaffold_32 . exon 663721 663894 . + . ID=Physo134607.2;Parent=Physo134607;constitutive=1;rank=2 scaffold_32 . CDS 663923 665389 . + 0 ID=Physo134607;Parent=Physo134607;rank=3 scaffold_32 . exon 663923 665389 . + . ID=Physo134607.3;Parent=Physo134607;constitutive=1;rank=3 scaffold_32 . CDS 665618 665652 . + 0 ID=Physo134607;Parent=Physo134607;rank=4 scaffold_32 . exon 665618 665652 . + . ID=Physo134607.4;Parent=Physo134607;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_32 . CDS 665724 665856 . + 0 ID=Physo134607;Parent=Physo134607;rank=5 scaffold_32 . exon 665724 665856 . + . ID=Physo134607.5;Parent=Physo134607;constitutive=1;ensembl_phase=2;rank=5 scaffold_32 . repeat_region 667589 667629 . ? . description=trf scaffold_32 . biological_region 669365 669370 0.999 + . logic_name=eponine scaffold_32 . biological_region 669593 669594 0.999 + . logic_name=eponine scaffold_32 . biological_region 671434 671436 0.999 + . logic_name=eponine scaffold_32 . biological_region 671779 671779 0.999 - . logic_name=eponine scaffold_32 . biological_region 673081 673084 0.999 + . logic_name=eponine scaffold_32 . repeat_region 674826 674879 . ? . description=trf scaffold_32 . biological_region 675787 675790 0.999 - . logic_name=eponine scaffold_32 ensembl protein_coding_gene 666471 668538 . - . ID=Physo134608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320179;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 666471 668538 . - . ID=Physo134608;Parent=Physo134608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 666471 666881 . - 0 ID=Physo134608;Parent=Physo134608;rank=7 scaffold_32 . exon 666471 666881 . - . ID=Physo134608.7;Parent=Physo134608;constitutive=1;rank=7 scaffold_32 . CDS 666951 667211 . - 0 ID=Physo134608;Parent=Physo134608;rank=6 scaffold_32 . exon 666951 667211 . - . ID=Physo134608.6;Parent=Physo134608;constitutive=1;rank=6 scaffold_32 . CDS 667274 667455 . - 0 ID=Physo134608;Parent=Physo134608;rank=5 scaffold_32 . exon 667274 667455 . - . ID=Physo134608.5;Parent=Physo134608;constitutive=1;ensembl_phase=1;rank=5 scaffold_32 . CDS 667522 667687 . - 0 ID=Physo134608;Parent=Physo134608;rank=4 scaffold_32 . exon 667522 667687 . - . ID=Physo134608.4;Parent=Physo134608;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_32 . CDS 667759 668049 . - 0 ID=Physo134608;Parent=Physo134608;rank=3 scaffold_32 . exon 667759 668049 . - . ID=Physo134608.3;Parent=Physo134608;constitutive=1;rank=3 scaffold_32 . CDS 668102 668197 . - 0 ID=Physo134608;Parent=Physo134608;rank=2 scaffold_32 . exon 668102 668197 . - . ID=Physo134608.2;Parent=Physo134608;constitutive=1;rank=2 scaffold_32 . CDS 668260 668538 . - 0 ID=Physo134608;Parent=Physo134608;rank=1 scaffold_32 . exon 668260 668538 . - . ID=Physo134608.1;Parent=Physo134608;constitutive=1;rank=1 scaffold_32 ensembl protein_coding_gene 670784 673312 . + . ID=Physo134609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320180;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 670784 673312 . + . ID=Physo134609;Parent=Physo134609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 670784 671669 . + 0 ID=Physo134609;Parent=Physo134609;rank=1 scaffold_32 . exon 670784 671669 . + . ID=Physo134609.1;Parent=Physo134609;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_32 . CDS 671841 672285 . + 0 ID=Physo134609;Parent=Physo134609;rank=2 scaffold_32 . exon 671841 672285 . + . ID=Physo134609.2;Parent=Physo134609;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_32 . CDS 672595 672734 . + 0 ID=Physo134609;Parent=Physo134609;rank=3 scaffold_32 . exon 672595 672734 . + . ID=Physo134609.3;Parent=Physo134609;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_32 . CDS 672872 672989 . + 0 ID=Physo134609;Parent=Physo134609;rank=4 scaffold_32 . exon 672872 672989 . + . ID=Physo134609.4;Parent=Physo134609;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_32 . CDS 673057 673312 . + 0 ID=Physo134609;Parent=Physo134609;rank=5 scaffold_32 . exon 673057 673312 . + . ID=Physo134609.5;Parent=Physo134609;constitutive=1;ensembl_phase=2;rank=5 scaffold_32 ensembl protein_coding_gene 675558 676115 . - . ID=Physo134610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_320181;logic_name=jgi_physo1_1 scaffold_32 ensembl transcript 675558 676115 . - . ID=Physo134610;Parent=Physo134610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_32 . CDS 675558 676115 . - 0 ID=Physo134610;Parent=Physo134610;rank=1 scaffold_32 . exon 675558 676115 . - . ID=Physo134610.1;Parent=Physo134610;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_31 1 706248 scaffold_31 . repeat_region 2049 2057 . ? . description=dust scaffold_31 . repeat_region 3275 3283 . ? . description=dust scaffold_31 . repeat_region 9205 9387 . - . description=GypsyPi-1c_LTR scaffold_31 ensembl tRNA_gene 379 450 . - . ID=EPrPSOG00000000025;biotype=tRNA;description=tRNA-Pro for anticodon UGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_31 ensembl transcript 379 450 . - . ID=EPrPSOT00000000025;Parent=EPrPSOG00000000025;biotype=tRNA;logic_name=ncrna_eg scaffold_31 ensembl tRNA_gene 1030 1101 . - . ID=EPrPSOG00000000239;biotype=tRNA;description=tRNA-Pro for anticodon UGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_31 ensembl transcript 1030 1101 . - . ID=EPrPSOT00000000239;Parent=EPrPSOG00000000239;biotype=tRNA;logic_name=ncrna_eg scaffold_31 . exon 379 450 . - . ID=EPrPSOE00000000025;Parent=EPrPSOT00000000025;constitutive=1;rank=1 scaffold_31 . exon 1030 1101 . - . ID=EPrPSOE00000000239;Parent=EPrPSOT00000000239;constitutive=1;rank=1 scaffold_31 . biological_region 12031 12031 0.999 + . logic_name=eponine scaffold_31 . repeat_region 12329 12402 . ? . description=trf scaffold_31 . biological_region 12407 12410 0.999 - . logic_name=eponine scaffold_31 . biological_region 12430 12433 0.999 + . logic_name=eponine scaffold_31 . repeat_region 12513 12556 . ? . description=trf scaffold_31 . repeat_region 12530 12574 . ? . description=trf scaffold_31 . biological_region 12551 12556 0.999 + . logic_name=eponine scaffold_31 . biological_region 12555 12563 0.999 - . logic_name=eponine scaffold_31 . biological_region 12584 12586 0.999 - . logic_name=eponine scaffold_31 . biological_region 12598 12602 0.999 - . logic_name=eponine scaffold_31 . biological_region 12701 12705 0.999 - . logic_name=eponine scaffold_31 . biological_region 12823 12827 0.999 - . logic_name=eponine scaffold_31 . biological_region 13270 13272 0.999 + . logic_name=eponine scaffold_31 . biological_region 13295 13300 0.999 - . logic_name=eponine scaffold_31 . biological_region 13377 13377 0.999 + . logic_name=eponine scaffold_31 . repeat_region 13524 13653 . ? . description=trf scaffold_31 . biological_region 13694 13698 0.999 + . logic_name=eponine scaffold_31 . biological_region 13741 13741 0.999 + . logic_name=eponine scaffold_31 . biological_region 13751 13753 0.999 - . logic_name=eponine scaffold_31 . biological_region 13806 13808 0.999 + . logic_name=eponine scaffold_31 . biological_region 13848 13850 0.999 + . logic_name=eponine scaffold_31 . biological_region 13881 13884 0.999 - . logic_name=eponine scaffold_31 . biological_region 13961 13966 0.999 + . logic_name=eponine scaffold_31 . biological_region 14068 14073 0.999 - . logic_name=eponine scaffold_31 . biological_region 14083 14087 0.999 + . logic_name=eponine scaffold_31 . biological_region 14097 14098 0.999 + . logic_name=eponine scaffold_31 . biological_region 14218 14222 0.999 - . logic_name=eponine scaffold_31 . biological_region 14474 14477 0.999 - . logic_name=eponine scaffold_31 . biological_region 14523 14527 0.999 - . logic_name=eponine scaffold_31 . biological_region 14540 14542 0.999 - . logic_name=eponine scaffold_31 . biological_region 14609 14610 0.999 - . logic_name=eponine scaffold_31 . biological_region 14638 14643 0.999 + . logic_name=eponine scaffold_31 . biological_region 14703 14709 0.999 + . logic_name=eponine scaffold_31 . biological_region 14731 14735 0.999 - . logic_name=eponine scaffold_31 . biological_region 14752 14753 0.999 + . logic_name=eponine scaffold_31 . biological_region 14768 14774 0.999 + . logic_name=eponine scaffold_31 . repeat_region 14774 14904 . ? . description=trf scaffold_31 . repeat_region 14777 14848 . ? . description=trf scaffold_31 . biological_region 14786 14791 0.999 + . logic_name=eponine scaffold_31 . biological_region 14807 14813 0.999 - . logic_name=eponine scaffold_31 . repeat_region 14814 14872 . ? . description=trf scaffold_31 . biological_region 14830 14835 0.999 + . logic_name=eponine scaffold_31 . biological_region 14831 14836 0.999 - . logic_name=eponine scaffold_31 . biological_region 14848 14859 0.999 - . logic_name=eponine scaffold_31 . biological_region 14864 14871 0.999 + . logic_name=eponine scaffold_31 . biological_region 14873 14882 0.999 - . logic_name=eponine scaffold_31 . biological_region 14888 14894 0.999 + . logic_name=eponine scaffold_31 . biological_region 14891 14897 0.999 - . logic_name=eponine scaffold_31 . repeat_region 14892 14943 . ? . description=trf scaffold_31 . repeat_region 14892 14988 . ? . description=trf scaffold_31 . repeat_region 14912 14957 . ? . description=trf scaffold_31 . biological_region 14916 14924 0.999 - . logic_name=eponine scaffold_31 . biological_region 14946 14950 0.999 - . logic_name=eponine scaffold_31 . biological_region 14989 14990 0.999 - . logic_name=eponine scaffold_31 . repeat_region 15023 15064 . ? . description=trf scaffold_31 . biological_region 15050 15055 0.999 - . logic_name=eponine scaffold_31 . biological_region 15165 15166 0.999 - . logic_name=eponine scaffold_31 . repeat_region 15233 15275 . ? . description=trf scaffold_31 . biological_region 15234 15235 0.999 - . logic_name=eponine scaffold_31 . biological_region 15263 15267 0.999 - . logic_name=eponine scaffold_31 . biological_region 15312 15317 0.999 - . logic_name=eponine scaffold_31 . biological_region 15704 15707 0.999 - . logic_name=eponine scaffold_31 . biological_region 16320 16328 0.999 + . logic_name=eponine scaffold_31 . biological_region 16855 16859 0.999 + . logic_name=eponine scaffold_31 . biological_region 16863 16864 0.999 - . logic_name=eponine scaffold_31 . biological_region 16899 16906 0.999 + . logic_name=eponine scaffold_31 . biological_region 16919 16920 0.999 + . logic_name=eponine scaffold_31 . biological_region 16946 16954 0.999 - . logic_name=eponine scaffold_31 . biological_region 16993 16998 0.999 - . logic_name=eponine scaffold_31 . biological_region 17026 17031 0.999 - . logic_name=eponine scaffold_31 . biological_region 17458 17463 0.999 + . logic_name=eponine scaffold_31 . biological_region 17859 17864 0.999 + . logic_name=eponine scaffold_31 . biological_region 18013 18017 0.999 + . logic_name=eponine scaffold_31 . biological_region 18073 18077 0.999 + . logic_name=eponine scaffold_31 . biological_region 19046 19050 0.999 + . logic_name=eponine scaffold_31 . repeat_region 19089 19158 . ? . description=trf scaffold_31 . biological_region 19160 19162 0.999 - . logic_name=eponine scaffold_31 . biological_region 19266 19266 0.999 + . logic_name=eponine scaffold_31 . repeat_region 19563 19636 . ? . description=trf scaffold_31 . biological_region 19641 19644 0.999 - . logic_name=eponine scaffold_31 . biological_region 19664 19667 0.999 + . logic_name=eponine scaffold_31 . biological_region 19786 19789 0.999 + . logic_name=eponine scaffold_31 . biological_region 19789 19797 0.999 - . logic_name=eponine scaffold_31 . biological_region 19817 19820 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 13223 18849 . - . ID=Physo134291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310001;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 13223 18849 . - . ID=Physo134291;Parent=Physo134291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 13223 13776 . - 0 ID=Physo134291;Parent=Physo134291;rank=8 scaffold_31 . exon 13223 13776 . - . ID=Physo134291.8;Parent=Physo134291;constitutive=1;ensembl_phase=1;rank=8 scaffold_31 . CDS 13855 14228 . - 0 ID=Physo134291;Parent=Physo134291;rank=7 scaffold_31 . exon 13855 14228 . - . ID=Physo134291.7;Parent=Physo134291;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_31 . CDS 14281 14516 . - 0 ID=Physo134291;Parent=Physo134291;rank=6 scaffold_31 . exon 14281 14516 . - . ID=Physo134291.6;Parent=Physo134291;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_31 . CDS 14781 15012 . - 0 ID=Physo134291;Parent=Physo134291;rank=5 scaffold_31 . exon 14781 15012 . - . ID=Physo134291.5;Parent=Physo134291;constitutive=1;ensembl_phase=2;rank=5 scaffold_31 . CDS 15101 16529 . - 0 ID=Physo134291;Parent=Physo134291;rank=4 scaffold_31 . exon 15101 16529 . - . ID=Physo134291.4;Parent=Physo134291;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_31 . CDS 16676 17551 . - 0 ID=Physo134291;Parent=Physo134291;rank=3 scaffold_31 . exon 16676 17551 . - . ID=Physo134291.3;Parent=Physo134291;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 17583 18795 . - 0 ID=Physo134291;Parent=Physo134291;rank=2 scaffold_31 . exon 17583 18795 . - . ID=Physo134291.2;Parent=Physo134291;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . CDS 18847 18849 . - 0 ID=Physo134291;Parent=Physo134291;rank=1 scaffold_31 . exon 18847 18849 . - . ID=Physo134291.1;Parent=Physo134291;constitutive=1;rank=1 scaffold_31 . repeat_region 20327 20334 . ? . description=dust scaffold_31 . repeat_region 20631 20704 . ? . description=dust scaffold_31 . repeat_region 21478 21490 . ? . description=dust scaffold_31 . repeat_region 22865 22873 . ? . description=dust scaffold_31 . repeat_region 23464 23479 . ? . description=dust scaffold_31 . repeat_region 29107 29115 . ? . description=dust scaffold_31 ensembl protein_coding_gene 22544 23110 . - . ID=Physo134292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310002;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 22544 23110 . - . ID=Physo134292;Parent=Physo134292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 22544 22809 . - 0 ID=Physo134292;Parent=Physo134292;rank=2 scaffold_31 . exon 22544 22809 . - . ID=Physo134292.2;Parent=Physo134292;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 22879 23110 . - 0 ID=Physo134292;Parent=Physo134292;rank=1 scaffold_31 . exon 22879 23110 . - . ID=Physo134292.1;Parent=Physo134292;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . biological_region 39013 39014 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 34361 34517 . - . ID=Physo116186;biotype=protein_coding;external_name=estExt_Genewise1.C_310068;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 34361 34517 . - . ID=Physo116186;Parent=Physo116186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 34361 34438 . - 0 ID=Physo116186;Parent=Physo116186;rank=2 scaffold_31 . exon 34361 34438 . - . ID=Physo116186.2;Parent=Physo116186;constitutive=1;rank=2 scaffold_31 . CDS 34452 34475 . - 0 ID=Physo116186;Parent=Physo116186;rank=1 scaffold_31 . exon 34452 34517 . - . ID=Physo116186.1;Parent=Physo116186;constitutive=1;ensembl_phase=-1;rank=1 scaffold_31 ensembl protein_coding_gene 36042 38439 . - . ID=Physo134293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310003;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 36042 38439 . - . ID=Physo134293;Parent=Physo134293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 36042 36052 . - 0 ID=Physo134293;Parent=Physo134293;rank=8 scaffold_31 . exon 36042 36052 . - . ID=Physo134293.8;Parent=Physo134293;constitutive=1;ensembl_phase=1;rank=8 scaffold_31 . CDS 36118 36409 . - 0 ID=Physo134293;Parent=Physo134293;rank=7 scaffold_31 . exon 36118 36409 . - . ID=Physo134293.7;Parent=Physo134293;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_31 . CDS 36566 36758 . - 0 ID=Physo134293;Parent=Physo134293;rank=6 scaffold_31 . exon 36566 36758 . - . ID=Physo134293.6;Parent=Physo134293;constitutive=1;ensembl_phase=2;rank=6 scaffold_31 . CDS 37100 37347 . - 0 ID=Physo134293;Parent=Physo134293;rank=5 scaffold_31 . exon 37100 37347 . - . ID=Physo134293.5;Parent=Physo134293;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_31 . CDS 37404 37766 . - 0 ID=Physo134293;Parent=Physo134293;rank=4 scaffold_31 . exon 37404 37766 . - . ID=Physo134293.4;Parent=Physo134293;constitutive=1;rank=4 scaffold_31 . CDS 37937 37975 . - 0 ID=Physo134293;Parent=Physo134293;rank=3 scaffold_31 . exon 37937 37975 . - . ID=Physo134293.3;Parent=Physo134293;constitutive=1;rank=3 scaffold_31 . CDS 38137 38280 . - 0 ID=Physo134293;Parent=Physo134293;rank=2 scaffold_31 . exon 38137 38280 . - . ID=Physo134293.2;Parent=Physo134293;constitutive=1;rank=2 scaffold_31 . CDS 38401 38439 . - 0 ID=Physo134293;Parent=Physo134293;rank=1 scaffold_31 . exon 38401 38439 . - . ID=Physo134293.1;Parent=Physo134293;constitutive=1;rank=1 scaffold_31 . repeat_region 41188 41221 . ? . description=trf scaffold_31 . repeat_region 43510 43531 . ? . description=trf scaffold_31 ensembl protein_coding_gene 41173 43443 . + . ID=Physo134294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310004;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 41173 43443 . + . ID=Physo134294;Parent=Physo134294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 41173 41806 . + 0 ID=Physo134294;Parent=Physo134294;rank=1 scaffold_31 . exon 41173 41806 . + . ID=Physo134294.1;Parent=Physo134294;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 41830 41880 . + 0 ID=Physo134294;Parent=Physo134294;rank=2 scaffold_31 . exon 41830 41880 . + . ID=Physo134294.2;Parent=Physo134294;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 42086 43443 . + 0 ID=Physo134294;Parent=Physo134294;rank=3 scaffold_31 . exon 42086 43443 . + . ID=Physo134294.3;Parent=Physo134294;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 ensembl protein_coding_gene 43553 45273 . - . ID=Physo134295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310005;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 43553 45273 . - . ID=Physo134295;Parent=Physo134295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 43553 44420 . - 0 ID=Physo134295;Parent=Physo134295;rank=3 scaffold_31 . exon 43553 44420 . - . ID=Physo134295.3;Parent=Physo134295;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 44496 45070 . - 0 ID=Physo134295;Parent=Physo134295;rank=2 scaffold_31 . exon 44496 45070 . - . ID=Physo134295.2;Parent=Physo134295;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 45139 45273 . - 0 ID=Physo134295;Parent=Physo134295;rank=1 scaffold_31 . exon 45139 45273 . - . ID=Physo134295.1;Parent=Physo134295;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 48827 50497 . + . ID=Physo134296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310006;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 48827 50497 . + . ID=Physo134296;Parent=Physo134296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 48827 50227 . + 0 ID=Physo134296;Parent=Physo134296;rank=1 scaffold_31 . exon 48827 50497 . + . ID=Physo134296.1;Parent=Physo134296;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_31 . biological_region 49967 49969 0.999 - . logic_name=eponine scaffold_31 . biological_region 53735 53739 0.999 - . logic_name=eponine scaffold_31 . biological_region 53815 53817 0.999 + . logic_name=eponine scaffold_31 . biological_region 53987 53993 0.999 + . logic_name=eponine scaffold_31 . biological_region 54628 54629 0.999 - . logic_name=eponine scaffold_31 . biological_region 55136 55139 0.999 + . logic_name=eponine scaffold_31 . biological_region 55357 55365 0.999 + . logic_name=eponine scaffold_31 . biological_region 56000 56004 0.999 + . logic_name=eponine scaffold_31 . biological_region 56028 56030 0.999 + . logic_name=eponine scaffold_31 . biological_region 56050 56055 0.999 + . logic_name=eponine scaffold_31 . biological_region 56077 56080 0.999 + . logic_name=eponine scaffold_31 . biological_region 56212 56214 0.999 + . logic_name=eponine scaffold_31 . biological_region 56273 56273 0.999 + . logic_name=eponine scaffold_31 . biological_region 56385 56386 0.999 + . logic_name=eponine scaffold_31 . biological_region 57635 57636 0.999 + . logic_name=eponine scaffold_31 . biological_region 58984 58984 0.999 + . logic_name=eponine scaffold_31 . biological_region 59038 59042 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 51087 54494 . - . ID=Physo134297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310007;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 51087 54494 . - . ID=Physo134297;Parent=Physo134297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 51087 54494 . - 0 ID=Physo134297;Parent=Physo134297;rank=1 scaffold_31 . exon 51087 54494 . - . ID=Physo134297.1;Parent=Physo134297;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 56054 57814 . - . ID=Physo134298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310008;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 56054 57814 . - . ID=Physo134298;Parent=Physo134298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 56054 56315 . - . ID=Physo134298.6;Parent=Physo134298;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_31 . CDS 56207 56315 . - 0 ID=Physo134298;Parent=Physo134298;rank=6 scaffold_31 . CDS 56422 56502 . - 0 ID=Physo134298;Parent=Physo134298;rank=5 scaffold_31 . exon 56422 56502 . - . ID=Physo134298.5;Parent=Physo134298;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_31 . CDS 56581 56726 . - 0 ID=Physo134298;Parent=Physo134298;rank=4 scaffold_31 . exon 56581 56726 . - . ID=Physo134298.4;Parent=Physo134298;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_31 . CDS 56887 57059 . - 0 ID=Physo134298;Parent=Physo134298;rank=3 scaffold_31 . exon 56887 57059 . - . ID=Physo134298.3;Parent=Physo134298;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 57139 57320 . - 0 ID=Physo134298;Parent=Physo134298;rank=2 scaffold_31 . exon 57139 57320 . - . ID=Physo134298.2;Parent=Physo134298;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 57411 57814 . - 0 ID=Physo134298;Parent=Physo134298;rank=1 scaffold_31 . exon 57411 57814 . - . ID=Physo134298.1;Parent=Physo134298;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 60142 60780 . + . ID=Physo134299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310009;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 60142 60780 . + . ID=Physo134299;Parent=Physo134299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 60142 60165 . + . ID=Physo134299.1;Parent=Physo134299;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_31 . exon 60263 60428 . + . ID=Physo134299.2;Parent=Physo134299;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_31 . CDS 60413 60428 . + 0 ID=Physo134299;Parent=Physo134299;rank=1 scaffold_31 . CDS 60448 60776 . + 0 ID=Physo134299;Parent=Physo134299;rank=2 scaffold_31 . exon 60448 60780 . + . ID=Physo134299.3;Parent=Physo134299;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_31 ensembl protein_coding_gene 60960 62090 . + . ID=Physo134300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310010;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 60960 62090 . + . ID=Physo134300;Parent=Physo134300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 60960 61250 . + 0 ID=Physo134300;Parent=Physo134300;rank=1 scaffold_31 . exon 60960 61250 . + . ID=Physo134300.1;Parent=Physo134300;constitutive=1;rank=1 scaffold_31 . CDS 61330 61833 . + 0 ID=Physo134300;Parent=Physo134300;rank=2 scaffold_31 . exon 61330 61833 . + . ID=Physo134300.2;Parent=Physo134300;constitutive=1;rank=2 scaffold_31 . CDS 61896 62090 . + 0 ID=Physo134300;Parent=Physo134300;rank=3 scaffold_31 . exon 61896 62090 . + . ID=Physo134300.3;Parent=Physo134300;constitutive=1;rank=3 scaffold_31 ensembl protein_coding_gene 63590 64987 . + . ID=Physo134301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310011;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 63590 64987 . + . ID=Physo134301;Parent=Physo134301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 63590 64216 . + 0 ID=Physo134301;Parent=Physo134301;rank=1 scaffold_31 . exon 63590 64216 . + . ID=Physo134301.1;Parent=Physo134301;constitutive=1;rank=1 scaffold_31 . CDS 64284 64937 . + 0 ID=Physo134301;Parent=Physo134301;rank=2 scaffold_31 . exon 64284 64987 . + . ID=Physo134301.2;Parent=Physo134301;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_31 ensembl protein_coding_gene 65063 65710 . + . ID=Physo134302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310012;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 65063 65710 . + . ID=Physo134302;Parent=Physo134302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 65063 65710 . + 0 ID=Physo134302;Parent=Physo134302;rank=1 scaffold_31 . exon 65063 65710 . + . ID=Physo134302.1;Parent=Physo134302;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 65726 67010 . - . ID=Physo134303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310013;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 65726 67010 . - . ID=Physo134303;Parent=Physo134303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 65726 67010 . - . ID=Physo134303.1;Parent=Physo134303;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_31 . CDS 65844 67010 . - 0 ID=Physo134303;Parent=Physo134303;rank=1 scaffold_31 . biological_region 70829 70830 0.999 + . logic_name=eponine scaffold_31 . biological_region 70931 70936 0.999 - . logic_name=eponine scaffold_31 . repeat_region 73665 73682 . ? . description=dust scaffold_31 . biological_region 74334 74339 0.999 + . logic_name=eponine scaffold_31 . repeat_region 76425 76514 . ? . description=dust scaffold_31 . biological_region 77549 77552 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 74822 77187 . - . ID=Physo108777;biotype=protein_coding;description=Heat shock protein 90 [Source:UniProtKB/TrEMBL%3BAcc:A7XGZ0];external_name=HSP90;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 74822 77187 . - . ID=Physo108777;Parent=Physo108777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 74822 77187 . - . ID=Physo108777.1;Parent=Physo108777;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 75027 77147 . - 0 ID=Physo108777;Parent=Physo108777;rank=1 scaffold_31 ensembl protein_coding_gene 70520 73612 . + . ID=Physo134304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310014;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 70520 73612 . + . ID=Physo134304;Parent=Physo134304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 70520 73612 . + 0 ID=Physo134304;Parent=Physo134304;rank=1 scaffold_31 . exon 70520 73612 . + . ID=Physo134304.1;Parent=Physo134304;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 73694 74420 . - . ID=Physo134305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310015;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 73694 74420 . - . ID=Physo134305;Parent=Physo134305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 73694 74420 . - . ID=Physo134305.1;Parent=Physo134305;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 73761 74411 . - 0 ID=Physo134305;Parent=Physo134305;rank=1 scaffold_31 ensembl protein_coding_gene 78228 80600 . - . ID=Physo134307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310017;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 78228 80600 . - . ID=Physo134307;Parent=Physo134307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 78228 80600 . - 0 ID=Physo134307;Parent=Physo134307;rank=1 scaffold_31 . exon 78228 80600 . - . ID=Physo134307.1;Parent=Physo134307;constitutive=1;rank=1 scaffold_31 . repeat_region 79587 79621 . ? . description=trf scaffold_31 . repeat_region 83437 83542 . ? . description=trf scaffold_31 ensembl protein_coding_gene 81362 82274 . + . ID=Physo134308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310018;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 81362 82274 . + . ID=Physo134308;Parent=Physo134308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 81362 81453 . + 0 ID=Physo134308;Parent=Physo134308;rank=1 scaffold_31 . exon 81362 81453 . + . ID=Physo134308.1;Parent=Physo134308;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 81527 82000 . + 0 ID=Physo134308;Parent=Physo134308;rank=2 scaffold_31 . exon 81527 82000 . + . ID=Physo134308.2;Parent=Physo134308;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_31 . CDS 82064 82274 . + 0 ID=Physo134308;Parent=Physo134308;rank=3 scaffold_31 . exon 82064 82274 . + . ID=Physo134308.3;Parent=Physo134308;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 ensembl protein_coding_gene 86698 87245 . + . ID=Physo134310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310020;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 86698 87245 . + . ID=Physo134310;Parent=Physo134310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 86698 87064 . + 0 ID=Physo134310;Parent=Physo134310;rank=1 scaffold_31 . exon 86698 87064 . + . ID=Physo134310.1;Parent=Physo134310;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 87214 87245 . + 0 ID=Physo134310;Parent=Physo134310;rank=2 scaffold_31 . exon 87214 87245 . + . ID=Physo134310.2;Parent=Physo134310;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 ensembl protein_coding_gene 84131 86363 . - . ID=Physo156920;biotype=protein_coding;external_name=C_scaffold_31000003;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 84131 86363 . - . ID=Physo156920;Parent=Physo156920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 84131 85125 . - 0 ID=Physo156920;Parent=Physo156920;rank=6 scaffold_31 . exon 84131 85125 . - . ID=Physo156920.6;Parent=Physo156920;constitutive=1;ensembl_phase=1;rank=6 scaffold_31 . CDS 85197 85284 . - 0 ID=Physo156920;Parent=Physo156920;rank=5 scaffold_31 . exon 85197 85284 . - . ID=Physo156920.5;Parent=Physo156920;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_31 . CDS 85357 85424 . - 0 ID=Physo156920;Parent=Physo156920;rank=4 scaffold_31 . exon 85357 85424 . - . ID=Physo156920.4;Parent=Physo156920;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . CDS 85491 85560 . - 0 ID=Physo156920;Parent=Physo156920;rank=3 scaffold_31 . exon 85491 85560 . - . ID=Physo156920.3;Parent=Physo156920;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_31 . CDS 85627 85825 . - 0 ID=Physo156920;Parent=Physo156920;rank=2 scaffold_31 . exon 85627 85825 . - . ID=Physo156920.2;Parent=Physo156920;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 85900 86363 . - 0 ID=Physo156920;Parent=Physo156920;rank=1 scaffold_31 . exon 85900 86363 . - . ID=Physo156920.1;Parent=Physo156920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . biological_region 94419 94421 0.999 - . logic_name=eponine scaffold_31 . repeat_region 97304 97582 . + . description=GypsyPi-1c_LTR scaffold_31 . repeat_region 97595 104310 . + . description=GypsyPi-1c_I-int scaffold_31 . biological_region 97812 97813 0.999 + . logic_name=eponine scaffold_31 . biological_region 98088 98091 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 89713 90987 . + . ID=Physo134311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310021;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 89713 90987 . + . ID=Physo134311;Parent=Physo134311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 89713 90987 . + 0 ID=Physo134311;Parent=Physo134311;rank=1 scaffold_31 . exon 89713 90987 . + . ID=Physo134311.1;Parent=Physo134311;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 94136 95913 . - . ID=Physo134312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310022;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 94136 95913 . - . ID=Physo134312;Parent=Physo134312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 94136 94180 . - 0 ID=Physo134312;Parent=Physo134312;rank=5 scaffold_31 . exon 94136 94180 . - . ID=Physo134312.5;Parent=Physo134312;constitutive=1;rank=5 scaffold_31 . CDS 94248 94537 . - 0 ID=Physo134312;Parent=Physo134312;rank=4 scaffold_31 . exon 94248 94537 . - . ID=Physo134312.4;Parent=Physo134312;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . CDS 94656 94900 . - 0 ID=Physo134312;Parent=Physo134312;rank=3 scaffold_31 . exon 94656 94900 . - . ID=Physo134312.3;Parent=Physo134312;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 94982 95488 . - 0 ID=Physo134312;Parent=Physo134312;rank=2 scaffold_31 . exon 94982 95488 . - . ID=Physo134312.2;Parent=Physo134312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_31 . CDS 95564 95913 . - 0 ID=Physo134312;Parent=Physo134312;rank=1 scaffold_31 . exon 95564 95913 . - . ID=Physo134312.1;Parent=Physo134312;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 97655 102549 . + . ID=Physo134313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310023;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 97655 102549 . + . ID=Physo134313;Parent=Physo134313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 97655 97891 . + 0 ID=Physo134313;Parent=Physo134313;rank=1 scaffold_31 . exon 97655 97891 . + . ID=Physo134313.1;Parent=Physo134313;constitutive=1;rank=1 scaffold_31 . CDS 98090 98655 . + 0 ID=Physo134313;Parent=Physo134313;rank=2 scaffold_31 . exon 98090 98655 . + . ID=Physo134313.2;Parent=Physo134313;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 98875 101011 . + 0 ID=Physo134313;Parent=Physo134313;rank=3 scaffold_31 . exon 98875 101011 . + . ID=Physo134313.3;Parent=Physo134313;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 101168 101523 . + 0 ID=Physo134313;Parent=Physo134313;rank=4 scaffold_31 . CDS 101669 102494 . + 0 ID=Physo134313;Parent=Physo134313;rank=5 scaffold_31 . CDS 102541 102549 . + 0 ID=Physo134313;Parent=Physo134313;rank=6 scaffold_31 . repeat_region 99404 99566 . ? . description=trf scaffold_31 . repeat_region 99571 99653 . ? . description=trf scaffold_31 . exon 101168 101523 . + . ID=Physo134313.4;Parent=Physo134313;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_31 . exon 101669 102494 . + . ID=Physo134313.5;Parent=Physo134313;constitutive=1;ensembl_phase=2;rank=5 scaffold_31 . exon 102541 102549 . + . ID=Physo134313.6;Parent=Physo134313;constitutive=1;rank=6 scaffold_31 ensembl protein_coding_gene 102681 105014 . - . ID=Physo134314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310024;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 102681 105014 . - . ID=Physo134314;Parent=Physo134314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 102681 102686 . - 0 ID=Physo134314;Parent=Physo134314;rank=5 scaffold_31 . exon 102681 102686 . - . ID=Physo134314.5;Parent=Physo134314;constitutive=1;rank=5 scaffold_31 . CDS 102810 103152 . - 0 ID=Physo134314;Parent=Physo134314;rank=4 scaffold_31 . exon 102810 103152 . - . ID=Physo134314.4;Parent=Physo134314;constitutive=1;ensembl_phase=2;rank=4 scaffold_31 . CDS 103267 103460 . - 0 ID=Physo134314;Parent=Physo134314;rank=3 scaffold_31 . exon 103267 103460 . - . ID=Physo134314.3;Parent=Physo134314;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_31 . CDS 103609 104957 . - 0 ID=Physo134314;Parent=Physo134314;rank=2 scaffold_31 . exon 103609 104957 . - . ID=Physo134314.2;Parent=Physo134314;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 104990 105014 . - 0 ID=Physo134314;Parent=Physo134314;rank=1 scaffold_31 . exon 104990 105014 . - . ID=Physo134314.1;Parent=Physo134314;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 105551 106228 . + . ID=Physo134315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310025;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 105551 106228 . + . ID=Physo134315;Parent=Physo134315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 105551 106228 . + 0 ID=Physo134315;Parent=Physo134315;rank=1 scaffold_31 . exon 105551 106228 . + . ID=Physo134315.1;Parent=Physo134315;constitutive=1;rank=1 scaffold_31 . repeat_region 109661 109670 . ? . description=dust scaffold_31 . biological_region 111829 111831 0.999 - . logic_name=eponine scaffold_31 . biological_region 111903 111906 0.999 - . logic_name=eponine scaffold_31 . repeat_region 113171 113179 . ? . description=dust scaffold_31 . biological_region 116317 116318 0.999 - . logic_name=eponine scaffold_31 . repeat_region 119357 119406 . ? . description=dust scaffold_31 ensembl protein_coding_gene 110009 111283 . + . ID=Physo134316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310026;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 110009 111283 . + . ID=Physo134316;Parent=Physo134316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 110009 110061 . + 0 ID=Physo134316;Parent=Physo134316;rank=1 scaffold_31 . exon 110009 110061 . + . ID=Physo134316.1;Parent=Physo134316;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 110473 111283 . + 0 ID=Physo134316;Parent=Physo134316;rank=2 scaffold_31 . exon 110473 111283 . + . ID=Physo134316.2;Parent=Physo134316;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 ensembl protein_coding_gene 116326 117998 . + . ID=Physo134317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310027;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 116326 117998 . + . ID=Physo134317;Parent=Physo134317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 116326 116638 . + 0 ID=Physo134317;Parent=Physo134317;rank=1 scaffold_31 . exon 116326 116638 . + . ID=Physo134317.1;Parent=Physo134317;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 116710 117998 . + 0 ID=Physo134317;Parent=Physo134317;rank=2 scaffold_31 . exon 116710 117998 . + . ID=Physo134317.2;Parent=Physo134317;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . repeat_region 125217 125281 . ? . description=trf scaffold_31 . repeat_region 125234 125260 . ? . description=trf scaffold_31 . repeat_region 125246 125290 . ? . description=trf scaffold_31 ensembl protein_coding_gene 126103 129374 . - . ID=Physo134318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310028;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 126103 129374 . - . ID=Physo134318;Parent=Physo134318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 126103 127244 . - 0 ID=Physo134318;Parent=Physo134318;rank=3 scaffold_31 . exon 126103 127244 . - . ID=Physo134318.3;Parent=Physo134318;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 127401 129147 . - 0 ID=Physo134318;Parent=Physo134318;rank=2 scaffold_31 . exon 127401 129147 . - . ID=Physo134318.2;Parent=Physo134318;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . CDS 129315 129374 . - 0 ID=Physo134318;Parent=Physo134318;rank=1 scaffold_31 . exon 129315 129374 . - . ID=Physo134318.1;Parent=Physo134318;constitutive=1;rank=1 scaffold_31 . biological_region 130181 130183 0.999 - . logic_name=eponine scaffold_31 . biological_region 130325 130331 0.999 + . logic_name=eponine scaffold_31 . biological_region 130329 130337 0.999 - . logic_name=eponine scaffold_31 . biological_region 130357 130359 0.999 - . logic_name=eponine scaffold_31 . biological_region 130371 130375 0.999 - . logic_name=eponine scaffold_31 . biological_region 130410 130416 0.999 + . logic_name=eponine scaffold_31 . biological_region 130417 130418 0.999 - . logic_name=eponine scaffold_31 . biological_region 130430 130438 0.999 + . logic_name=eponine scaffold_31 . biological_region 130469 130475 0.999 + . logic_name=eponine scaffold_31 . biological_region 130556 130564 0.999 - . logic_name=eponine scaffold_31 . biological_region 130672 130673 0.999 - . logic_name=eponine scaffold_31 . biological_region 130708 130710 0.999 + . logic_name=eponine scaffold_31 . biological_region 130745 130748 0.999 - . logic_name=eponine scaffold_31 . biological_region 130950 130951 0.999 + . logic_name=eponine scaffold_31 . biological_region 131393 131396 0.999 - . logic_name=eponine scaffold_31 . biological_region 131917 131917 0.999 + . logic_name=eponine scaffold_31 . biological_region 131921 131923 0.999 - . logic_name=eponine scaffold_31 . biological_region 132179 132182 0.999 - . logic_name=eponine scaffold_31 . biological_region 132327 132333 0.999 - . logic_name=eponine scaffold_31 . biological_region 133524 133525 0.999 + . logic_name=eponine scaffold_31 . biological_region 133526 133527 0.999 - . logic_name=eponine scaffold_31 . biological_region 135568 135570 0.999 + . logic_name=eponine scaffold_31 . biological_region 135667 135673 0.999 - . logic_name=eponine scaffold_31 . repeat_region 135904 136388 . ? . description=dust scaffold_31 . biological_region 136588 136591 0.999 + . logic_name=eponine scaffold_31 . biological_region 136777 136781 0.999 - . logic_name=eponine scaffold_31 . biological_region 137395 137400 0.999 + . logic_name=eponine scaffold_31 . biological_region 137926 137931 0.999 + . logic_name=eponine scaffold_31 . biological_region 137935 137938 0.999 - . logic_name=eponine scaffold_31 . biological_region 137949 137952 0.999 - . logic_name=eponine scaffold_31 . biological_region 137972 137979 0.999 + . logic_name=eponine scaffold_31 . biological_region 137991 137993 0.999 + . logic_name=eponine scaffold_31 . biological_region 138020 138027 0.999 - . logic_name=eponine scaffold_31 . biological_region 138066 138071 0.999 - . logic_name=eponine scaffold_31 . biological_region 138099 138104 0.999 - . logic_name=eponine scaffold_31 . biological_region 138139 138140 0.999 - . logic_name=eponine scaffold_31 . biological_region 138534 138539 0.999 + . logic_name=eponine scaffold_31 . biological_region 139094 139098 0.999 + . logic_name=eponine scaffold_31 . biological_region 139154 139158 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 131798 135799 . - . ID=Physo134319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310029;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 131798 135799 . - . ID=Physo134319;Parent=Physo134319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 131798 132215 . - 0 ID=Physo134319;Parent=Physo134319;rank=3 scaffold_31 . exon 131798 132215 . - . ID=Physo134319.3;Parent=Physo134319;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 132401 133081 . - 0 ID=Physo134319;Parent=Physo134319;rank=2 scaffold_31 . exon 132401 133081 . - . ID=Physo134319.2;Parent=Physo134319;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_31 . CDS 133140 135799 . - 0 ID=Physo134319;Parent=Physo134319;rank=1 scaffold_31 . exon 133140 135799 . - . ID=Physo134319.1;Parent=Physo134319;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 137627 139930 . - . ID=Physo134320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310030;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 137627 139930 . - . ID=Physo134320;Parent=Physo134320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 137627 139930 . - 0 ID=Physo134320;Parent=Physo134320;rank=1 scaffold_31 . exon 137627 139930 . - . ID=Physo134320.1;Parent=Physo134320;constitutive=1;rank=1 scaffold_31 . repeat_region 140602 140687 . ? . description=trf scaffold_31 . repeat_region 140602 140687 . ? . description=trf scaffold_31 . repeat_region 140799 140842 . ? . description=trf scaffold_31 . repeat_region 140816 140860 . ? . description=trf scaffold_31 . repeat_region 143021 143086 . ? . description=trf scaffold_31 . repeat_region 143021 143105 . ? . description=trf scaffold_31 . repeat_region 144209 144274 . ? . description=trf scaffold_31 . repeat_region 144209 144293 . ? . description=trf scaffold_31 ensembl protein_coding_gene 140754 141667 . - . ID=Physo134321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310031;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 140754 141667 . - . ID=Physo134321;Parent=Physo134321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 140754 140796 . - 0 ID=Physo134321;Parent=Physo134321;rank=2 scaffold_31 . exon 140754 140796 . - . ID=Physo134321.2;Parent=Physo134321;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 140922 141667 . - 0 ID=Physo134321;Parent=Physo134321;rank=1 scaffold_31 . exon 140922 141667 . - . ID=Physo134321.1;Parent=Physo134321;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 142452 146409 . + . ID=Physo134322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310032;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 142452 146409 . + . ID=Physo134322;Parent=Physo134322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 142452 142456 . + 0 ID=Physo134322;Parent=Physo134322;rank=1 scaffold_31 . exon 142452 142456 . + . ID=Physo134322.1;Parent=Physo134322;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 142591 143164 . + 0 ID=Physo134322;Parent=Physo134322;rank=2 scaffold_31 . exon 142591 143164 . + . ID=Physo134322.2;Parent=Physo134322;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 143393 143439 . + 0 ID=Physo134322;Parent=Physo134322;rank=3 scaffold_31 . exon 143393 143439 . + . ID=Physo134322.3;Parent=Physo134322;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_31 . CDS 143779 144761 . + 0 ID=Physo134322;Parent=Physo134322;rank=4 scaffold_31 . exon 143779 144761 . + . ID=Physo134322.4;Parent=Physo134322;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_31 . CDS 144991 145061 . + 0 ID=Physo134322;Parent=Physo134322;rank=5 scaffold_31 . exon 144991 145061 . + . ID=Physo134322.5;Parent=Physo134322;constitutive=1;ensembl_phase=1;rank=5 scaffold_31 . CDS 145511 146077 . + 0 ID=Physo134322;Parent=Physo134322;rank=6 scaffold_31 . exon 145511 146077 . + . ID=Physo134322.6;Parent=Physo134322;constitutive=1;rank=6 scaffold_31 . CDS 146104 146409 . + 0 ID=Physo134322;Parent=Physo134322;rank=7 scaffold_31 . exon 146104 146409 . + . ID=Physo134322.7;Parent=Physo134322;constitutive=1;rank=7 scaffold_31 ensembl protein_coding_gene 146539 148051 . + . ID=Physo134323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310033;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 146539 148051 . + . ID=Physo134323;Parent=Physo134323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 146539 148051 . + . ID=Physo134323.1;Parent=Physo134323;constitutive=1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 146552 148051 . + 0 ID=Physo134323;Parent=Physo134323;rank=1 scaffold_31 . repeat_region 151126 151143 . ? . description=dust scaffold_31 . repeat_region 151397 151406 . ? . description=dust scaffold_31 . repeat_region 156376 156385 . ? . description=dust scaffold_31 . repeat_region 160519 160565 . ? . description=trf scaffold_31 . repeat_region 160628 160667 . ? . description=trf scaffold_31 . repeat_region 161338 161367 . ? . description=trf scaffold_31 . biological_region 163239 163241 0.999 - . logic_name=eponine scaffold_31 . biological_region 163273 163277 0.999 - . logic_name=eponine scaffold_31 . biological_region 168631 168635 0.999 + . logic_name=eponine scaffold_31 . biological_region 168757 168762 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 167097 169429 . + . ID=Physo116205;biotype=protein_coding;external_name=estExt_Genewise1.C_310087;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 167097 169429 . + . ID=Physo116205;Parent=Physo116205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 167097 167530 . + . ID=Physo116205.1;Parent=Physo116205;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_31 . CDS 167163 167530 . + 0 ID=Physo116205;Parent=Physo116205;rank=1 scaffold_31 . CDS 167594 167645 . + 0 ID=Physo116205;Parent=Physo116205;rank=2 scaffold_31 . exon 167594 167645 . + . ID=Physo116205.2;Parent=Physo116205;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 167715 167913 . + 0 ID=Physo116205;Parent=Physo116205;rank=3 scaffold_31 . exon 167715 167913 . + . ID=Physo116205.3;Parent=Physo116205;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_31 . CDS 167994 169429 . + 0 ID=Physo116205;Parent=Physo116205;rank=4 scaffold_31 . exon 167994 169429 . + . ID=Physo116205.4;Parent=Physo116205;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . repeat_region 170548 170555 . ? . description=dust scaffold_31 ensembl protein_coding_gene 177469 178954 . + . ID=Physo108778;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_310002;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 177469 178954 . + . ID=Physo108778;Parent=Physo108778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 177469 178887 . + 0 ID=Physo108778;Parent=Physo108778;rank=1 scaffold_31 . exon 177469 178954 . + . ID=Physo108778.1;Parent=Physo108778;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_31 ensembl protein_coding_gene 170862 175068 . + . ID=Physo134325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310035;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 170862 175068 . + . ID=Physo134325;Parent=Physo134325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 170862 170996 . + 0 ID=Physo134325;Parent=Physo134325;rank=1 scaffold_31 . exon 170862 170996 . + . ID=Physo134325.1;Parent=Physo134325;constitutive=1;rank=1 scaffold_31 . CDS 171154 171669 . + 0 ID=Physo134325;Parent=Physo134325;rank=2 scaffold_31 . exon 171154 171669 . + . ID=Physo134325.2;Parent=Physo134325;constitutive=1;rank=2 scaffold_31 . CDS 171763 175068 . + 0 ID=Physo134325;Parent=Physo134325;rank=3 scaffold_31 . exon 171763 175068 . + . ID=Physo134325.3;Parent=Physo134325;constitutive=1;rank=3 scaffold_31 ensembl protein_coding_gene 175252 175710 . - . ID=Physo134326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310036;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 175252 175710 . - . ID=Physo134326;Parent=Physo134326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 175252 175698 . - 0 ID=Physo134326;Parent=Physo134326;rank=1 scaffold_31 . exon 175252 175710 . - . ID=Physo134326.1;Parent=Physo134326;constitutive=1;ensembl_phase=-1;rank=1 scaffold_31 ensembl protein_coding_gene 175973 177076 . + . ID=Physo134327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310037;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 175973 177076 . + . ID=Physo134327;Parent=Physo134327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 175973 177076 . + 0 ID=Physo134327;Parent=Physo134327;rank=1 scaffold_31 . exon 175973 177076 . + . ID=Physo134327.1;Parent=Physo134327;constitutive=1;rank=1 scaffold_31 . biological_region 181103 181111 0.999 + . logic_name=eponine scaffold_31 . biological_region 181142 181144 0.999 - . logic_name=eponine scaffold_31 . biological_region 181146 181153 0.999 + . logic_name=eponine scaffold_31 . biological_region 181217 181217 0.999 - . logic_name=eponine scaffold_31 . biological_region 181691 181698 0.999 + . logic_name=eponine scaffold_31 . biological_region 181699 181702 0.999 - . logic_name=eponine scaffold_31 . biological_region 181716 181722 0.999 + . logic_name=eponine scaffold_31 . biological_region 181794 181795 0.999 - . logic_name=eponine scaffold_31 . biological_region 187603 187609 0.999 + . logic_name=eponine scaffold_31 . biological_region 187636 187643 0.999 + . logic_name=eponine scaffold_31 . biological_region 187736 187740 0.999 - . logic_name=eponine scaffold_31 . repeat_region 188104 188132 . ? . description=trf scaffold_31 . biological_region 188557 188562 0.999 + . logic_name=eponine scaffold_31 . biological_region 188736 188737 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 180998 187834 . + . ID=Physo134329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310039;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 180998 187834 . + . ID=Physo134329;Parent=Physo134329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 180998 187834 . + 0 ID=Physo134329;Parent=Physo134329;rank=1 scaffold_31 . exon 180998 187834 . + . ID=Physo134329.1;Parent=Physo134329;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 188013 188393 . - . ID=Physo134330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310040;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 188013 188393 . - . ID=Physo134330;Parent=Physo134330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 188013 188393 . - 0 ID=Physo134330;Parent=Physo134330;rank=1 scaffold_31 . exon 188013 188393 . - . ID=Physo134330.1;Parent=Physo134330;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 188568 189863 . + . ID=Physo134331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310041;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 188568 189863 . + . ID=Physo134331;Parent=Physo134331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 188568 189015 . + 0 ID=Physo134331;Parent=Physo134331;rank=1 scaffold_31 . exon 188568 189015 . + . ID=Physo134331.1;Parent=Physo134331;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 189103 189294 . + 0 ID=Physo134331;Parent=Physo134331;rank=2 scaffold_31 . CDS 189371 189452 . + 0 ID=Physo134331;Parent=Physo134331;rank=3 scaffold_31 . CDS 189523 189724 . + 0 ID=Physo134331;Parent=Physo134331;rank=4 scaffold_31 . repeat_region 189069 189090 . ? . description=dust scaffold_31 . exon 189103 189294 . + . ID=Physo134331.2;Parent=Physo134331;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_31 . exon 189371 189452 . + . ID=Physo134331.3;Parent=Physo134331;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_31 . exon 189523 189863 . + . ID=Physo134331.4;Parent=Physo134331;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_31 ensembl protein_coding_gene 189987 193118 . - . ID=Physo156922;biotype=protein_coding;external_name=C_scaffold_31000005;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 189987 193118 . - . ID=Physo156922;Parent=Physo156922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 189987 191115 . - 0 ID=Physo156922;Parent=Physo156922;rank=7 scaffold_31 . exon 189987 191115 . - . ID=Physo156922.7;Parent=Physo156922;constitutive=1;ensembl_phase=2;rank=7 scaffold_31 . CDS 191179 191375 . - 0 ID=Physo156922;Parent=Physo156922;rank=6 scaffold_31 . exon 191179 191375 . - . ID=Physo156922.6;Parent=Physo156922;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_31 . CDS 191469 191597 . - 0 ID=Physo156922;Parent=Physo156922;rank=5 scaffold_31 . exon 191469 191597 . - . ID=Physo156922.5;Parent=Physo156922;constitutive=1;rank=5 scaffold_31 . CDS 191832 192041 . - 0 ID=Physo156922;Parent=Physo156922;rank=4 scaffold_31 . exon 191832 192041 . - . ID=Physo156922.4;Parent=Physo156922;constitutive=1;rank=4 scaffold_31 . CDS 192141 192272 . - 0 ID=Physo156922;Parent=Physo156922;rank=3 scaffold_31 . exon 192141 192272 . - . ID=Physo156922.3;Parent=Physo156922;constitutive=1;rank=3 scaffold_31 . CDS 192432 192635 . - 0 ID=Physo156922;Parent=Physo156922;rank=2 scaffold_31 . exon 192432 192635 . - . ID=Physo156922.2;Parent=Physo156922;constitutive=1;rank=2 scaffold_31 . CDS 193002 193118 . - 0 ID=Physo156922;Parent=Physo156922;rank=1 scaffold_31 . exon 193002 193118 . - . ID=Physo156922.1;Parent=Physo156922;constitutive=1;rank=1 scaffold_31 . biological_region 204447 204452 0.999 - . logic_name=eponine scaffold_31 . biological_region 205027 205029 0.999 + . logic_name=eponine scaffold_31 . biological_region 205047 205053 0.999 + . logic_name=eponine scaffold_31 . biological_region 205852 205854 0.999 - . logic_name=eponine scaffold_31 . biological_region 205906 205909 0.999 + . logic_name=eponine scaffold_31 . biological_region 207645 207648 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 202507 207832 . - . ID=Physo156923;biotype=protein_coding;external_name=C_scaffold_31000006;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 202507 207832 . - . ID=Physo156923;Parent=Physo156923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 202507 202524 . - 0 ID=Physo156923;Parent=Physo156923;rank=3 scaffold_31 . exon 202507 202524 . - . ID=Physo156923.3;Parent=Physo156923;constitutive=1;rank=3 scaffold_31 . CDS 202689 205199 . - 0 ID=Physo156923;Parent=Physo156923;rank=2 scaffold_31 . exon 202689 205199 . - . ID=Physo156923.2;Parent=Physo156923;constitutive=1;rank=2 scaffold_31 . CDS 205535 207832 . - 0 ID=Physo156923;Parent=Physo156923;rank=1 scaffold_31 . exon 205535 207832 . - . ID=Physo156923.1;Parent=Physo156923;constitutive=1;rank=1 scaffold_31 . repeat_region 209038 209113 . ? . description=trf scaffold_31 . repeat_region 209042 209085 . ? . description=trf scaffold_31 . repeat_region 209054 209102 . ? . description=trf scaffold_31 . repeat_region 213012 213019 . ? . description=dust scaffold_31 . repeat_region 215599 215606 . ? . description=dust scaffold_31 . biological_region 224422 224424 0.999 - . logic_name=eponine scaffold_31 . repeat_region 233464 233744 . - . description=GypsyPi-1c_I-int scaffold_31 . repeat_region 234064 235411 . - . description=GypsyPi-1c_I-int scaffold_31 . repeat_region 235460 236372 . - . description=GypsyPi-1c_I-int scaffold_31 . repeat_region 237615 237681 . - . description=GypsyPi-1c_I-int scaffold_31 ensembl protein_coding_gene 233862 236543 . - . ID=Physo134334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310044;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 233862 236543 . - . ID=Physo134334;Parent=Physo134334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 233862 234266 . - 0 ID=Physo134334;Parent=Physo134334;rank=7 scaffold_31 . exon 233862 234266 . - . ID=Physo134334.7;Parent=Physo134334;constitutive=1;rank=7 scaffold_31 . CDS 234346 234460 . - 0 ID=Physo134334;Parent=Physo134334;rank=6 scaffold_31 . exon 234346 234460 . - . ID=Physo134334.6;Parent=Physo134334;constitutive=1;ensembl_phase=2;rank=6 scaffold_31 . CDS 234600 235615 . - 0 ID=Physo134334;Parent=Physo134334;rank=5 scaffold_31 . exon 234600 235615 . - . ID=Physo134334.5;Parent=Physo134334;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_31 . CDS 235704 235731 . - 0 ID=Physo134334;Parent=Physo134334;rank=4 scaffold_31 . exon 235704 235731 . - . ID=Physo134334.4;Parent=Physo134334;constitutive=1;ensembl_phase=2;rank=4 scaffold_31 . CDS 235869 236140 . - 0 ID=Physo134334;Parent=Physo134334;rank=3 scaffold_31 . exon 235869 236140 . - . ID=Physo134334.3;Parent=Physo134334;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_31 . CDS 236192 236434 . - 0 ID=Physo134334;Parent=Physo134334;rank=2 scaffold_31 . exon 236192 236434 . - . ID=Physo134334.2;Parent=Physo134334;constitutive=1;rank=2 scaffold_31 . CDS 236508 236543 . - 0 ID=Physo134334;Parent=Physo134334;rank=1 scaffold_31 . exon 236508 236543 . - . ID=Physo134334.1;Parent=Physo134334;constitutive=1;rank=1 scaffold_31 . biological_region 248026 248027 0.999 - . logic_name=eponine scaffold_31 . repeat_region 248059 248073 . ? . description=dust scaffold_31 . repeat_region 248377 248386 . ? . description=dust scaffold_31 . biological_region 248409 248410 0.999 + . logic_name=eponine scaffold_31 . biological_region 248431 248436 0.999 + . logic_name=eponine scaffold_31 . repeat_region 251978 252038 . ? . description=trf scaffold_31 . repeat_region 251979 252037 . ? . description=trf scaffold_31 . repeat_region 252349 252390 . ? . description=trf scaffold_31 . repeat_region 258548 258589 . ? . description=trf scaffold_31 ensembl protein_coding_gene 257348 258863 . + . ID=Physo134335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310045;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 257348 258863 . + . ID=Physo134335;Parent=Physo134335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 257348 257900 . + 0 ID=Physo134335;Parent=Physo134335;rank=1 scaffold_31 . exon 257348 257900 . + . ID=Physo134335.1;Parent=Physo134335;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 258050 258566 . + 0 ID=Physo134335;Parent=Physo134335;rank=2 scaffold_31 . exon 258050 258566 . + . ID=Physo134335.2;Parent=Physo134335;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_31 . CDS 258592 258711 . + 0 ID=Physo134335;Parent=Physo134335;rank=3 scaffold_31 . exon 258592 258711 . + . ID=Physo134335.3;Parent=Physo134335;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_31 . CDS 258860 258863 . + 0 ID=Physo134335;Parent=Physo134335;rank=4 scaffold_31 . repeat_region 263803 263817 . ? . description=dust scaffold_31 . repeat_region 265128 265135 . ? . description=dust scaffold_31 . biological_region 265345 265348 0.999 - . logic_name=eponine scaffold_31 . biological_region 266089 266093 0.999 + . logic_name=eponine scaffold_31 . biological_region 266167 266171 0.999 + . logic_name=eponine scaffold_31 . biological_region 266177 266181 0.999 - . logic_name=eponine scaffold_31 . biological_region 266232 266238 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 265681 269328 . + . ID=Physo108780;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_310004;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 265681 269328 . + . ID=Physo108780;Parent=Physo108780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 265681 265716 . + 0 ID=Physo108780;Parent=Physo108780;rank=1 scaffold_31 . exon 265681 265716 . + . ID=Physo108780.1;Parent=Physo108780;constitutive=1;rank=1 scaffold_31 . CDS 265744 269241 . + 0 ID=Physo108780;Parent=Physo108780;rank=2 scaffold_31 . exon 265744 269328 . + . ID=Physo108780.2;Parent=Physo108780;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_31 . exon 258860 258863 . + . ID=Physo134335.4;Parent=Physo134335;constitutive=1;ensembl_phase=2;rank=4 scaffold_31 ensembl protein_coding_gene 270675 272063 . + . ID=Physo134337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310047;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 270675 272063 . + . ID=Physo134337;Parent=Physo134337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 270675 270737 . + 0 ID=Physo134337;Parent=Physo134337;rank=1 scaffold_31 . exon 270675 270737 . + . ID=Physo134337.1;Parent=Physo134337;constitutive=1;rank=1 scaffold_31 . CDS 270817 271056 . + 0 ID=Physo134337;Parent=Physo134337;rank=2 scaffold_31 . exon 270817 271056 . + . ID=Physo134337.2;Parent=Physo134337;constitutive=1;rank=2 scaffold_31 . CDS 271138 271569 . + 0 ID=Physo134337;Parent=Physo134337;rank=3 scaffold_31 . exon 271138 271569 . + . ID=Physo134337.3;Parent=Physo134337;constitutive=1;rank=3 scaffold_31 . CDS 271662 271724 . + 0 ID=Physo134337;Parent=Physo134337;rank=4 scaffold_31 . exon 271662 271724 . + . ID=Physo134337.4;Parent=Physo134337;constitutive=1;rank=4 scaffold_31 . CDS 271806 272063 . + 0 ID=Physo134337;Parent=Physo134337;rank=5 scaffold_31 . exon 271806 272063 . + . ID=Physo134337.5;Parent=Physo134337;constitutive=1;rank=5 scaffold_31 ensembl protein_coding_gene 272218 273105 . - . ID=Physo134338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310048;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 272218 273105 . - . ID=Physo134338;Parent=Physo134338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 272218 273105 . - . ID=Physo134338.1;Parent=Physo134338;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_31 . CDS 272293 273105 . - 0 ID=Physo134338;Parent=Physo134338;rank=1 scaffold_31 ensembl protein_coding_gene 276349 280320 . - . ID=Physo134339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310049;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 276349 280320 . - . ID=Physo134339;Parent=Physo134339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 276349 276365 . - 0 ID=Physo134339;Parent=Physo134339;rank=10 scaffold_31 . exon 276349 276365 . - . ID=Physo134339.10;Parent=Physo134339;constitutive=1;ensembl_phase=1;rank=10 scaffold_31 . CDS 276454 276740 . - 0 ID=Physo134339;Parent=Physo134339;rank=9 scaffold_31 . exon 276454 276740 . - . ID=Physo134339.9;Parent=Physo134339;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_31 . CDS 276772 276901 . - 0 ID=Physo134339;Parent=Physo134339;rank=8 scaffold_31 . exon 276772 276901 . - . ID=Physo134339.8;Parent=Physo134339;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_31 . CDS 276942 276958 . - 0 ID=Physo134339;Parent=Physo134339;rank=7 scaffold_31 . exon 276942 276958 . - . ID=Physo134339.7;Parent=Physo134339;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_31 . CDS 277087 277136 . - 0 ID=Physo134339;Parent=Physo134339;rank=6 scaffold_31 . exon 277087 277136 . - . ID=Physo134339.6;Parent=Physo134339;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_31 . CDS 277370 277866 . - 0 ID=Physo134339;Parent=Physo134339;rank=5 scaffold_31 . exon 277370 277866 . - . ID=Physo134339.5;Parent=Physo134339;constitutive=1;ensembl_phase=1;rank=5 scaffold_31 . CDS 278129 278235 . - 0 ID=Physo134339;Parent=Physo134339;rank=4 scaffold_31 . exon 278129 278235 . - . ID=Physo134339.4;Parent=Physo134339;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_31 . CDS 278328 278410 . - 0 ID=Physo134339;Parent=Physo134339;rank=3 scaffold_31 . exon 278328 278410 . - . ID=Physo134339.3;Parent=Physo134339;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_31 . CDS 278490 279039 . - 0 ID=Physo134339;Parent=Physo134339;rank=2 scaffold_31 . exon 278490 279039 . - . ID=Physo134339.2;Parent=Physo134339;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 279446 280320 . - 0 ID=Physo134339;Parent=Physo134339;rank=1 scaffold_31 . repeat_region 282521 282529 . ? . description=dust scaffold_31 . biological_region 285262 285264 0.999 + . logic_name=eponine scaffold_31 . biological_region 285294 285300 0.999 - . logic_name=eponine scaffold_31 . biological_region 285908 285911 0.999 + . logic_name=eponine scaffold_31 . biological_region 286940 286944 0.999 + . logic_name=eponine scaffold_31 . biological_region 287088 287096 0.999 + . logic_name=eponine scaffold_31 . biological_region 287108 287117 0.999 - . logic_name=eponine scaffold_31 . biological_region 287193 287198 0.999 + . logic_name=eponine scaffold_31 . biological_region 287257 287258 0.999 - . logic_name=eponine scaffold_31 . biological_region 287310 287316 0.999 + . logic_name=eponine scaffold_31 . biological_region 287442 287443 0.999 - . logic_name=eponine scaffold_31 . biological_region 287981 287982 0.999 - . logic_name=eponine scaffold_31 . exon 279446 280320 . - . ID=Physo134339.1;Parent=Physo134339;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 284332 285381 . - . ID=Physo134340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310050;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 284332 285381 . - . ID=Physo134340;Parent=Physo134340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 284332 285381 . - 0 ID=Physo134340;Parent=Physo134340;rank=1 scaffold_31 . exon 284332 285381 . - . ID=Physo134340.1;Parent=Physo134340;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 285559 286650 . + . ID=Physo134341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310051;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 285559 286650 . + . ID=Physo134341;Parent=Physo134341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 285559 286650 . + 0 ID=Physo134341;Parent=Physo134341;rank=1 scaffold_31 . exon 285559 286650 . + . ID=Physo134341.1;Parent=Physo134341;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 286969 288351 . + . ID=Physo134342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310052;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 286969 288351 . + . ID=Physo134342;Parent=Physo134342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 286969 288351 . + 0 ID=Physo134342;Parent=Physo134342;rank=1 scaffold_31 . exon 286969 288351 . + . ID=Physo134342.1;Parent=Physo134342;constitutive=1;rank=1 scaffold_31 . repeat_region 292240 292272 . ? . description=trf scaffold_31 . repeat_region 296110 296150 . ? . description=trf scaffold_31 . repeat_region 297505 297534 . ? . description=trf scaffold_31 ensembl protein_coding_gene 288548 289341 . - . ID=Physo108781;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_310005;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 288548 289341 . - . ID=Physo108781;Parent=Physo108781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 288548 289008 . - 0 ID=Physo108781;Parent=Physo108781;rank=3 scaffold_31 . exon 288548 289008 . - . ID=Physo108781.3;Parent=Physo108781;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 289080 289147 . - 0 ID=Physo108781;Parent=Physo108781;rank=2 scaffold_31 . exon 289080 289147 . - . ID=Physo108781.2;Parent=Physo108781;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 289235 289341 . - 0 ID=Physo108781;Parent=Physo108781;rank=1 scaffold_31 . exon 289235 289341 . - . ID=Physo108781.1;Parent=Physo108781;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 293618 296038 . + . ID=Physo134345;biotype=protein_coding;description=Bifunctional dethiobiotin synthetase/adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Source:UniProtKB/TrEMBL%3BAcc:E6PBR1];external_name=BIODA;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 293618 296038 . + . ID=Physo134345;Parent=Physo134345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 293618 296038 . + 0 ID=Physo134345;Parent=Physo134345;rank=1 scaffold_31 . exon 293618 296038 . + . ID=Physo134345.1;Parent=Physo134345;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 297627 298127 . - . ID=Physo134346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310056;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 297627 298127 . - . ID=Physo134346;Parent=Physo134346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 297627 298127 . - 0 ID=Physo134346;Parent=Physo134346;rank=1 scaffold_31 . exon 297627 298127 . - . ID=Physo134346.1;Parent=Physo134346;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 289493 290821 . + . ID=Physo156926;biotype=protein_coding;external_name=C_scaffold_31000009;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 289493 290821 . + . ID=Physo156926;Parent=Physo156926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 289493 290446 . + 0 ID=Physo156926;Parent=Physo156926;rank=1 scaffold_31 . exon 289493 290446 . + . ID=Physo156926.1;Parent=Physo156926;constitutive=1;rank=1 scaffold_31 . CDS 290501 290821 . + 0 ID=Physo156926;Parent=Physo156926;rank=2 scaffold_31 . exon 290501 290821 . + . ID=Physo156926.2;Parent=Physo156926;constitutive=1;rank=2 scaffold_31 . biological_region 299516 299518 0.999 + . logic_name=eponine scaffold_31 . biological_region 299573 299574 0.999 - . logic_name=eponine scaffold_31 . biological_region 299584 299591 0.999 - . logic_name=eponine scaffold_31 . repeat_region 300011 300067 . ? . description=dust scaffold_31 . biological_region 302425 302427 0.999 - . logic_name=eponine scaffold_31 . biological_region 305911 305914 0.999 + . logic_name=eponine scaffold_31 . biological_region 307430 307434 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 299734 302430 . + . ID=Physo134347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310057;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 299734 302430 . + . ID=Physo134347;Parent=Physo134347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 299734 301335 . + 0 ID=Physo134347;Parent=Physo134347;rank=1 scaffold_31 . exon 299734 301335 . + . ID=Physo134347.1;Parent=Physo134347;constitutive=1;rank=1 scaffold_31 . CDS 301468 301505 . + 0 ID=Physo134347;Parent=Physo134347;rank=2 scaffold_31 . exon 301468 301505 . + . ID=Physo134347.2;Parent=Physo134347;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 301580 301811 . + 0 ID=Physo134347;Parent=Physo134347;rank=3 scaffold_31 . exon 301580 301811 . + . ID=Physo134347.3;Parent=Physo134347;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 301921 302163 . + 0 ID=Physo134347;Parent=Physo134347;rank=4 scaffold_31 . exon 301921 302163 . + . ID=Physo134347.4;Parent=Physo134347;constitutive=1;rank=4 scaffold_31 . CDS 302233 302430 . + 0 ID=Physo134347;Parent=Physo134347;rank=5 scaffold_31 . exon 302233 302430 . + . ID=Physo134347.5;Parent=Physo134347;constitutive=1;rank=5 scaffold_31 ensembl protein_coding_gene 305755 306335 . + . ID=Physo134348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310058;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 305755 306335 . + . ID=Physo134348;Parent=Physo134348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 305755 306335 . + . ID=Physo134348.1;Parent=Physo134348;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 305757 306284 . + 0 ID=Physo134348;Parent=Physo134348;rank=1 scaffold_31 ensembl protein_coding_gene 307303 310744 . + . ID=Physo134349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310059;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 307303 310744 . + . ID=Physo134349;Parent=Physo134349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 307303 310542 . + 0 ID=Physo134349;Parent=Physo134349;rank=1 scaffold_31 . exon 307303 310744 . + . ID=Physo134349.1;Parent=Physo134349;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_31 ensembl protein_coding_gene 310983 313186 . - . ID=Physo134350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310060;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 310983 313186 . - . ID=Physo134350;Parent=Physo134350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 310983 312302 . - 0 ID=Physo134350;Parent=Physo134350;rank=4 scaffold_31 . exon 310983 312302 . - . ID=Physo134350.4;Parent=Physo134350;constitutive=1;rank=4 scaffold_31 . CDS 312373 312495 . - 0 ID=Physo134350;Parent=Physo134350;rank=3 scaffold_31 . exon 312373 312495 . - . ID=Physo134350.3;Parent=Physo134350;constitutive=1;rank=3 scaffold_31 . CDS 312583 312992 . - 0 ID=Physo134350;Parent=Physo134350;rank=2 scaffold_31 . exon 312583 312992 . - . ID=Physo134350.2;Parent=Physo134350;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 313177 313186 . - 0 ID=Physo134350;Parent=Physo134350;rank=1 scaffold_31 . exon 313177 313186 . - . ID=Physo134350.1;Parent=Physo134350;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . repeat_region 320134 320141 . ? . description=dust scaffold_31 . repeat_region 322080 322088 . ? . description=dust scaffold_31 . repeat_region 324154 324161 . ? . description=dust scaffold_31 . repeat_region 325235 325242 . ? . description=dust scaffold_31 . repeat_region 326234 326246 . ? . description=dust scaffold_31 . repeat_region 327668 327679 . ? . description=dust scaffold_31 . biological_region 333853 333854 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 331808 333223 . - . ID=Physo134351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310061;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 331808 333223 . - . ID=Physo134351;Parent=Physo134351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 331808 333223 . - 0 ID=Physo134351;Parent=Physo134351;rank=1 scaffold_31 . exon 331808 333223 . - . ID=Physo134351.1;Parent=Physo134351;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 333374 336881 . - . ID=Physo134352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310062;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 333374 336881 . - . ID=Physo134352;Parent=Physo134352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 333374 333831 . - 0 ID=Physo134352;Parent=Physo134352;rank=5 scaffold_31 . exon 333374 333831 . - . ID=Physo134352.5;Parent=Physo134352;constitutive=1;ensembl_phase=1;rank=5 scaffold_31 . CDS 333863 334341 . - 0 ID=Physo134352;Parent=Physo134352;rank=4 scaffold_31 . exon 333863 334341 . - . ID=Physo134352.4;Parent=Physo134352;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_31 . CDS 334389 336178 . - 0 ID=Physo134352;Parent=Physo134352;rank=3 scaffold_31 . exon 334389 336178 . - . ID=Physo134352.3;Parent=Physo134352;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_31 . CDS 336224 336616 . - 0 ID=Physo134352;Parent=Physo134352;rank=2 scaffold_31 . exon 336224 336616 . - . ID=Physo134352.2;Parent=Physo134352;constitutive=1;rank=2 scaffold_31 . CDS 336648 336881 . - 0 ID=Physo134352;Parent=Physo134352;rank=1 scaffold_31 . exon 336648 336881 . - . ID=Physo134352.1;Parent=Physo134352;constitutive=1;rank=1 scaffold_31 . repeat_region 338451 338496 . ? . description=trf scaffold_31 . repeat_region 338526 338537 . ? . description=dust scaffold_31 . repeat_region 341483 341604 . ? . description=trf scaffold_31 . repeat_region 341512 341604 . ? . description=trf scaffold_31 ensembl protein_coding_gene 346097 347074 . + . ID=Physo134353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310063;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 346097 347074 . + . ID=Physo134353;Parent=Physo134353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 346097 346484 . + 0 ID=Physo134353;Parent=Physo134353;rank=1 scaffold_31 . exon 346097 346484 . + . ID=Physo134353.1;Parent=Physo134353;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 346517 346869 . + 0 ID=Physo134353;Parent=Physo134353;rank=2 scaffold_31 . exon 346517 346869 . + . ID=Physo134353.2;Parent=Physo134353;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 346934 347074 . + 0 ID=Physo134353;Parent=Physo134353;rank=3 scaffold_31 . exon 346934 347074 . + . ID=Physo134353.3;Parent=Physo134353;constitutive=1;rank=3 scaffold_31 ensembl protein_coding_gene 353081 354109 . + . ID=Physo134354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310064;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 353081 354109 . + . ID=Physo134354;Parent=Physo134354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 353081 354109 . + 0 ID=Physo134354;Parent=Physo134354;rank=1 scaffold_31 . exon 353081 354109 . + . ID=Physo134354.1;Parent=Physo134354;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 355611 356555 . + . ID=Physo134355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310065;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 355611 356555 . + . ID=Physo134355;Parent=Physo134355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 355611 355766 . + 0 ID=Physo134355;Parent=Physo134355;rank=1 scaffold_31 . exon 355611 355766 . + . ID=Physo134355.1;Parent=Physo134355;constitutive=1;rank=1 scaffold_31 . CDS 355792 356038 . + 0 ID=Physo134355;Parent=Physo134355;rank=2 scaffold_31 . exon 355792 356038 . + . ID=Physo134355.2;Parent=Physo134355;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . CDS 356188 356555 . + 0 ID=Physo134355;Parent=Physo134355;rank=3 scaffold_31 . exon 356188 356555 . + . ID=Physo134355.3;Parent=Physo134355;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 . repeat_region 360280 360287 . ? . description=dust scaffold_31 . repeat_region 367477 367526 . ? . description=dust scaffold_31 ensembl protein_coding_gene 361026 361944 . - . ID=Physo134356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310066;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 361026 361944 . - . ID=Physo134356;Parent=Physo134356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 361026 361031 . - 0 ID=Physo134356;Parent=Physo134356;rank=2 scaffold_31 . exon 361026 361031 . - . ID=Physo134356.2;Parent=Physo134356;constitutive=1;rank=2 scaffold_31 . CDS 361078 361944 . - 0 ID=Physo134356;Parent=Physo134356;rank=1 scaffold_31 . exon 361078 361944 . - . ID=Physo134356.1;Parent=Physo134356;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 362397 362813 . - . ID=Physo134357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310067;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 362397 362813 . - . ID=Physo134357;Parent=Physo134357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 362397 362813 . - 0 ID=Physo134357;Parent=Physo134357;rank=1 scaffold_31 . exon 362397 362813 . - . ID=Physo134357.1;Parent=Physo134357;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 364178 365399 . + . ID=Physo134358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310068;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 364178 365399 . + . ID=Physo134358;Parent=Physo134358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 364178 364346 . + 0 ID=Physo134358;Parent=Physo134358;rank=1 scaffold_31 . exon 364178 364346 . + . ID=Physo134358.1;Parent=Physo134358;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 364402 365399 . + 0 ID=Physo134358;Parent=Physo134358;rank=2 scaffold_31 . exon 364402 365399 . + . ID=Physo134358.2;Parent=Physo134358;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . biological_region 370277 370280 0.999 + . logic_name=eponine scaffold_31 . biological_region 370634 370638 0.999 + . logic_name=eponine scaffold_31 . biological_region 375903 375908 0.999 - . logic_name=eponine scaffold_31 . repeat_region 377430 377476 . ? . description=trf scaffold_31 ensembl protein_coding_gene 373743 374105 . - . ID=Physo134359;biotype=protein_coding;description=PsAvh96 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Z7];external_name=estExt_fgenesh1_pg.C_310069;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 373743 374105 . - . ID=Physo134359;Parent=Physo134359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 373743 374105 . - 0 ID=Physo134359;Parent=Physo134359;rank=1 scaffold_31 . exon 373743 374105 . - . ID=Physo134359.1;Parent=Physo134359;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 374526 376285 . - . ID=Physo134360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310070;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 374526 376285 . - . ID=Physo134360;Parent=Physo134360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 374526 376054 . - 0 ID=Physo134360;Parent=Physo134360;rank=2 scaffold_31 . exon 374526 376054 . - . ID=Physo134360.2;Parent=Physo134360;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 376141 376285 . - 0 ID=Physo134360;Parent=Physo134360;rank=1 scaffold_31 . exon 376141 376285 . - . ID=Physo134360.1;Parent=Physo134360;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 377344 379637 . - . ID=Physo134361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310071;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 377344 379637 . - . ID=Physo134361;Parent=Physo134361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 377344 377395 . - 0 ID=Physo134361;Parent=Physo134361;rank=2 scaffold_31 . exon 377344 377395 . - . ID=Physo134361.2;Parent=Physo134361;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 377566 379637 . - 0 ID=Physo134361;Parent=Physo134361;rank=1 scaffold_31 . exon 377566 379637 . - . ID=Physo134361.1;Parent=Physo134361;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 386826 388772 . + . ID=Physo108782;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_310006;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 386826 388772 . + . ID=Physo108782;Parent=Physo108782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 386826 388772 . + 0 ID=Physo108782;Parent=Physo108782;rank=1 scaffold_31 . exon 386826 388772 . + . ID=Physo108782.1;Parent=Physo108782;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 379752 382215 . - . ID=Physo134362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310072;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 379752 382215 . - . ID=Physo134362;Parent=Physo134362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 379752 382215 . - . ID=Physo134362.1;Parent=Physo134362;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_31 . CDS 379849 382215 . - 0 ID=Physo134362;Parent=Physo134362;rank=1 scaffold_31 ensembl protein_coding_gene 384313 386370 . - . ID=Physo134363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310073;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 384313 386370 . - . ID=Physo134363;Parent=Physo134363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 384313 386370 . - 0 ID=Physo134363;Parent=Physo134363;rank=1 scaffold_31 . exon 384313 386370 . - . ID=Physo134363.1;Parent=Physo134363;constitutive=1;rank=1 scaffold_31 . biological_region 388602 388606 0.999 + . logic_name=eponine scaffold_31 . repeat_region 390009 390081 . ? . description=dust scaffold_31 . repeat_region 390050 390070 . ? . description=trf scaffold_31 . biological_region 391044 391046 0.999 + . logic_name=eponine scaffold_31 . biological_region 391668 391670 0.999 - . logic_name=eponine scaffold_31 . biological_region 391876 391878 0.999 - . logic_name=eponine scaffold_31 . biological_region 391946 391948 0.999 + . logic_name=eponine scaffold_31 . biological_region 392096 392098 0.999 + . logic_name=eponine scaffold_31 . biological_region 392121 392126 0.999 + . logic_name=eponine scaffold_31 . biological_region 392178 392181 0.999 - . logic_name=eponine scaffold_31 . biological_region 393016 393022 0.999 - . logic_name=eponine scaffold_31 . biological_region 393355 393360 0.999 - . logic_name=eponine scaffold_31 . biological_region 395462 395463 0.999 + . logic_name=eponine scaffold_31 . biological_region 395467 395471 0.999 + . logic_name=eponine scaffold_31 . repeat_region 397591 397607 . ? . description=dust scaffold_31 ensembl protein_coding_gene 390521 391374 . + . ID=Physo134365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310075;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 390521 391374 . + . ID=Physo134365;Parent=Physo134365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 390521 390659 . + . ID=Physo134365.1;Parent=Physo134365;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 390572 390659 . + 0 ID=Physo134365;Parent=Physo134365;rank=1 scaffold_31 . CDS 390731 391374 . + 0 ID=Physo134365;Parent=Physo134365;rank=2 scaffold_31 . exon 390731 391374 . + . ID=Physo134365.2;Parent=Physo134365;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 ensembl protein_coding_gene 391930 393134 . + . ID=Physo134366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310076;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 391930 393134 . + . ID=Physo134366;Parent=Physo134366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 391930 391936 . + 0 ID=Physo134366;Parent=Physo134366;rank=1 scaffold_31 . exon 391930 391936 . + . ID=Physo134366.1;Parent=Physo134366;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 392014 392447 . + 0 ID=Physo134366;Parent=Physo134366;rank=2 scaffold_31 . exon 392014 392447 . + . ID=Physo134366.2;Parent=Physo134366;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 392780 393020 . + 0 ID=Physo134366;Parent=Physo134366;rank=3 scaffold_31 . exon 392780 393020 . + . ID=Physo134366.3;Parent=Physo134366;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_31 . CDS 393130 393134 . + 0 ID=Physo134366;Parent=Physo134366;rank=4 scaffold_31 . exon 393130 393134 . + . ID=Physo134366.4;Parent=Physo134366;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 ensembl protein_coding_gene 395441 396905 . - . ID=Physo134367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310077;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 395441 396905 . - . ID=Physo134367;Parent=Physo134367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 395441 396631 . - 0 ID=Physo134367;Parent=Physo134367;rank=2 scaffold_31 . exon 395441 396631 . - . ID=Physo134367.2;Parent=Physo134367;constitutive=1;rank=2 scaffold_31 . CDS 396663 396905 . - 0 ID=Physo134367;Parent=Physo134367;rank=1 scaffold_31 . exon 396663 396905 . - . ID=Physo134367.1;Parent=Physo134367;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 402408 402929 . + . ID=Physo134368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310078;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 402408 402929 . + . ID=Physo134368;Parent=Physo134368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 402408 402929 . + . ID=Physo134368.1;Parent=Physo134368;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 402410 402928 . + 0 ID=Physo134368;Parent=Physo134368;rank=1 scaffold_31 ensembl protein_coding_gene 403067 404617 . + . ID=Physo134369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310079;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 403067 404617 . + . ID=Physo134369;Parent=Physo134369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 403067 403105 . + 0 ID=Physo134369;Parent=Physo134369;rank=1 scaffold_31 . exon 403067 403105 . + . ID=Physo134369.1;Parent=Physo134369;constitutive=1;rank=1 scaffold_31 . CDS 403175 404617 . + 0 ID=Physo134369;Parent=Physo134369;rank=2 scaffold_31 . exon 403175 404617 . + . ID=Physo134369.2;Parent=Physo134369;constitutive=1;rank=2 scaffold_31 . biological_region 409306 409306 0.999 - . logic_name=eponine scaffold_31 . biological_region 409331 409333 0.999 - . logic_name=eponine scaffold_31 . biological_region 410470 410470 0.999 - . logic_name=eponine scaffold_31 . repeat_region 414429 414438 . ? . description=dust scaffold_31 ensembl protein_coding_gene 420802 422293 . - . ID=Physo134370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310080;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 420802 422293 . - . ID=Physo134370;Parent=Physo134370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 420802 420806 . - 0 ID=Physo134370;Parent=Physo134370;rank=4 scaffold_31 . exon 420802 420806 . - . ID=Physo134370.4;Parent=Physo134370;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . CDS 420880 421521 . - 0 ID=Physo134370;Parent=Physo134370;rank=3 scaffold_31 . exon 420880 421521 . - . ID=Physo134370.3;Parent=Physo134370;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 421726 421934 . - 0 ID=Physo134370;Parent=Physo134370;rank=2 scaffold_31 . exon 421726 421934 . - . ID=Physo134370.2;Parent=Physo134370;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 422241 422293 . - 0 ID=Physo134370;Parent=Physo134370;rank=1 scaffold_31 . exon 422241 422293 . - . ID=Physo134370.1;Parent=Physo134370;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 427079 429925 . - . ID=Physo134371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310081;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 427079 429925 . - . ID=Physo134371;Parent=Physo134371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 427079 428194 . - 0 ID=Physo134371;Parent=Physo134371;rank=2 scaffold_31 . exon 427079 428194 . - . ID=Physo134371.2;Parent=Physo134371;constitutive=1;rank=2 scaffold_31 . CDS 428417 429925 . - 0 ID=Physo134371;Parent=Physo134371;rank=1 scaffold_31 . biological_region 429765 429773 0.999 + . logic_name=eponine scaffold_31 . repeat_region 429807 429840 . ? . description=trf scaffold_31 . repeat_region 429818 429842 . ? . description=trf scaffold_31 . biological_region 429821 429826 0.999 + . logic_name=eponine scaffold_31 . repeat_region 430665 430705 . ? . description=trf scaffold_31 . repeat_region 433048 433055 . ? . description=dust scaffold_31 . repeat_region 433453 433460 . ? . description=dust scaffold_31 . repeat_region 437475 437529 . ? . description=dust scaffold_31 . exon 428417 429925 . - . ID=Physo134371.1;Parent=Physo134371;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 434126 435632 . - . ID=Physo134372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310082;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 434126 435632 . - . ID=Physo134372;Parent=Physo134372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 434126 434945 . - 0 ID=Physo134372;Parent=Physo134372;rank=3 scaffold_31 . exon 434126 434945 . - . ID=Physo134372.3;Parent=Physo134372;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 435023 435104 . - 0 ID=Physo134372;Parent=Physo134372;rank=2 scaffold_31 . exon 435023 435104 . - . ID=Physo134372.2;Parent=Physo134372;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_31 . CDS 435146 435632 . - 0 ID=Physo134372;Parent=Physo134372;rank=1 scaffold_31 . exon 435146 435632 . - . ID=Physo134372.1;Parent=Physo134372;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 439683 443766 . + . ID=Physo134373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310083;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 439683 443766 . + . ID=Physo134373;Parent=Physo134373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 439683 442309 . + 0 ID=Physo134373;Parent=Physo134373;rank=1 scaffold_31 . exon 439683 442309 . + . ID=Physo134373.1;Parent=Physo134373;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 442338 443345 . + 0 ID=Physo134373;Parent=Physo134373;rank=2 scaffold_31 . exon 442338 443345 . + . ID=Physo134373.2;Parent=Physo134373;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_31 . CDS 443418 443766 . + 0 ID=Physo134373;Parent=Physo134373;rank=3 scaffold_31 . exon 443418 443766 . + . ID=Physo134373.3;Parent=Physo134373;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . repeat_region 447765 447773 . ? . description=dust scaffold_31 . repeat_region 449997 450021 . ? . description=dust scaffold_31 . biological_region 451272 451273 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 459781 460446 . + . ID=Physo134374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310084;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 459781 460446 . + . ID=Physo134374;Parent=Physo134374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 459781 459817 . + 0 ID=Physo134374;Parent=Physo134374;rank=1 scaffold_31 . exon 459781 459817 . + . ID=Physo134374.1;Parent=Physo134374;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 460022 460272 . + 0 ID=Physo134374;Parent=Physo134374;rank=2 scaffold_31 . exon 460022 460272 . + . ID=Physo134374.2;Parent=Physo134374;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 460411 460446 . + 0 ID=Physo134374;Parent=Physo134374;rank=3 scaffold_31 . exon 460411 460446 . + . ID=Physo134374.3;Parent=Physo134374;constitutive=1;rank=3 scaffold_31 ensembl protein_coding_gene 462120 463463 . - . ID=Physo134375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310085;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 462120 463463 . - . ID=Physo134375;Parent=Physo134375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 462120 463463 . - 0 ID=Physo134375;Parent=Physo134375;rank=1 scaffold_31 . exon 462120 463463 . - . ID=Physo134375.1;Parent=Physo134375;constitutive=1;rank=1 scaffold_31 . repeat_region 467711 467718 . ? . description=dust scaffold_31 . repeat_region 473378 473385 . ? . description=dust scaffold_31 . repeat_region 474867 474907 . ? . description=trf scaffold_31 . biological_region 476678 476681 0.999 + . logic_name=eponine scaffold_31 . biological_region 477041 477044 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 470311 470847 . - . ID=Physo134376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310086;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 470311 470847 . - . ID=Physo134376;Parent=Physo134376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 470311 470847 . - 0 ID=Physo134376;Parent=Physo134376;rank=1 scaffold_31 . exon 470311 470847 . - . ID=Physo134376.1;Parent=Physo134376;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 471747 472981 . - . ID=Physo134377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310087;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 471747 472981 . - . ID=Physo134377;Parent=Physo134377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 471747 471764 . - 0 ID=Physo134377;Parent=Physo134377;rank=4 scaffold_31 . exon 471747 471764 . - . ID=Physo134377.4;Parent=Physo134377;constitutive=1;rank=4 scaffold_31 . CDS 472056 472274 . - 0 ID=Physo134377;Parent=Physo134377;rank=3 scaffold_31 . exon 472056 472274 . - . ID=Physo134377.3;Parent=Physo134377;constitutive=1;rank=3 scaffold_31 . CDS 472467 472685 . - 0 ID=Physo134377;Parent=Physo134377;rank=2 scaffold_31 . exon 472467 472685 . - . ID=Physo134377.2;Parent=Physo134377;constitutive=1;rank=2 scaffold_31 . CDS 472781 472981 . - 0 ID=Physo134377;Parent=Physo134377;rank=1 scaffold_31 . exon 472781 472981 . - . ID=Physo134377.1;Parent=Physo134377;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 476330 477928 . + . ID=Physo134378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310088;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 476330 477928 . + . ID=Physo134378;Parent=Physo134378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 476330 477928 . + 0 ID=Physo134378;Parent=Physo134378;rank=1 scaffold_31 . exon 476330 477928 . + . ID=Physo134378.1;Parent=Physo134378;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 482458 483617 . - . ID=Physo134379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310089;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 482458 483617 . - . ID=Physo134379;Parent=Physo134379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 482458 483223 . - 0 ID=Physo134379;Parent=Physo134379;rank=3 scaffold_31 . exon 482458 483223 . - . ID=Physo134379.3;Parent=Physo134379;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 483266 483306 . - 0 ID=Physo134379;Parent=Physo134379;rank=2 scaffold_31 . exon 483266 483306 . - . ID=Physo134379.2;Parent=Physo134379;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 483336 483617 . - 0 ID=Physo134379;Parent=Physo134379;rank=1 scaffold_31 . exon 483336 483617 . - . ID=Physo134379.1;Parent=Physo134379;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 483809 485125 . + . ID=Physo134380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310090;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 483809 485125 . + . ID=Physo134380;Parent=Physo134380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 483809 485125 . + 0 ID=Physo134380;Parent=Physo134380;rank=1 scaffold_31 . exon 483809 485125 . + . ID=Physo134380.1;Parent=Physo134380;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 487061 488270 . + . ID=Physo134382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310092;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 487061 488270 . + . ID=Physo134382;Parent=Physo134382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 487061 487085 . + 0 ID=Physo134382;Parent=Physo134382;rank=1 scaffold_31 . exon 487061 487085 . + . ID=Physo134382.1;Parent=Physo134382;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 487174 487283 . + 0 ID=Physo134382;Parent=Physo134382;rank=2 scaffold_31 . exon 487174 487283 . + . ID=Physo134382.2;Parent=Physo134382;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 487505 487543 . + 0 ID=Physo134382;Parent=Physo134382;rank=3 scaffold_31 . CDS 487638 487765 . + 0 ID=Physo134382;Parent=Physo134382;rank=4 scaffold_31 . CDS 487925 487933 . + 0 ID=Physo134382;Parent=Physo134382;rank=5 scaffold_31 . CDS 487997 488270 . + 0 ID=Physo134382;Parent=Physo134382;rank=6 scaffold_31 ensembl protein_coding_gene 485169 486497 . - . ID=Physo156934;biotype=protein_coding;external_name=C_scaffold_31000017;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 485169 486497 . - . ID=Physo156934;Parent=Physo156934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 485169 485405 . - 0 ID=Physo156934;Parent=Physo156934;rank=3 scaffold_31 . exon 485169 485405 . - . ID=Physo156934.3;Parent=Physo156934;constitutive=1;rank=3 scaffold_31 . CDS 485433 486076 . - 0 ID=Physo156934;Parent=Physo156934;rank=2 scaffold_31 . exon 485433 486076 . - . ID=Physo156934.2;Parent=Physo156934;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 486128 486497 . - 0 ID=Physo156934;Parent=Physo156934;rank=1 scaffold_31 . exon 486128 486497 . - . ID=Physo156934.1;Parent=Physo156934;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . biological_region 487755 487756 0.999 - . logic_name=eponine scaffold_31 . biological_region 494438 494439 0.999 + . logic_name=eponine scaffold_31 . exon 487505 487543 . + . ID=Physo134382.3;Parent=Physo134382;constitutive=1;rank=3 scaffold_31 . exon 487638 487765 . + . ID=Physo134382.4;Parent=Physo134382;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_31 . exon 487925 487933 . + . ID=Physo134382.5;Parent=Physo134382;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_31 . exon 487997 488270 . + . ID=Physo134382.6;Parent=Physo134382;constitutive=1;ensembl_phase=2;rank=6 scaffold_31 ensembl protein_coding_gene 494126 494974 . - . ID=Physo134383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310093;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 494126 494974 . - . ID=Physo134383;Parent=Physo134383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 494126 494974 . - 0 ID=Physo134383;Parent=Physo134383;rank=1 scaffold_31 . exon 494126 494974 . - . ID=Physo134383.1;Parent=Physo134383;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 488368 488928 . + . ID=Physo156935;biotype=protein_coding;external_name=C_scaffold_31000018;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 488368 488928 . + . ID=Physo156935;Parent=Physo156935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 488368 488777 . + 0 ID=Physo156935;Parent=Physo156935;rank=1 scaffold_31 . exon 488368 488777 . + . ID=Physo156935.1;Parent=Physo156935;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 488823 488928 . + 0 ID=Physo156935;Parent=Physo156935;rank=2 scaffold_31 . exon 488823 488928 . + . ID=Physo156935.2;Parent=Physo156935;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . repeat_region 497998 498023 . ? . description=trf scaffold_31 . repeat_region 498661 498739 . + . description=(CAGT)n scaffold_31 . repeat_region 498664 498739 . ? . description=dust scaffold_31 . repeat_region 498664 498739 . ? . description=trf scaffold_31 ensembl protein_coding_gene 499086 500032 . - . ID=Physo134384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310094;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 499086 500032 . - . ID=Physo134384;Parent=Physo134384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 499086 499734 . - 0 ID=Physo134384;Parent=Physo134384;rank=2 scaffold_31 . exon 499086 499734 . - . ID=Physo134384.2;Parent=Physo134384;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 499761 500032 . - 0 ID=Physo134384;Parent=Physo134384;rank=1 scaffold_31 . exon 499761 500032 . - . ID=Physo134384.1;Parent=Physo134384;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 501111 502241 . - . ID=Physo134385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310095;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 501111 502241 . - . ID=Physo134385;Parent=Physo134385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 501111 502241 . - 0 ID=Physo134385;Parent=Physo134385;rank=1 scaffold_31 . exon 501111 502241 . - . ID=Physo134385.1;Parent=Physo134385;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 503938 505845 . + . ID=Physo134386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310096;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 503938 505845 . + . ID=Physo134386;Parent=Physo134386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 503938 505845 . + 0 ID=Physo134386;Parent=Physo134386;rank=1 scaffold_31 . exon 503938 505845 . + . ID=Physo134386.1;Parent=Physo134386;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 506989 509994 . + . ID=Physo156937;biotype=protein_coding;external_name=C_scaffold_31000020;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 506989 509994 . + . ID=Physo156937;Parent=Physo156937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 506989 507360 . + 0 ID=Physo156937;Parent=Physo156937;rank=1 scaffold_31 . exon 506989 507360 . + . ID=Physo156937.1;Parent=Physo156937;constitutive=1;rank=1 scaffold_31 . CDS 507421 507735 . + 0 ID=Physo156937;Parent=Physo156937;rank=2 scaffold_31 . CDS 507951 508370 . + 0 ID=Physo156937;Parent=Physo156937;rank=3 scaffold_31 . CDS 508433 508489 . + 0 ID=Physo156937;Parent=Physo156937;rank=4 scaffold_31 . CDS 508597 508639 . + 0 ID=Physo156937;Parent=Physo156937;rank=5 scaffold_31 . CDS 508763 509527 . + 0 ID=Physo156937;Parent=Physo156937;rank=6 scaffold_31 . CDS 509732 509994 . + 0 ID=Physo156937;Parent=Physo156937;rank=7 scaffold_31 . biological_region 512365 512369 0.999 + . logic_name=eponine scaffold_31 . biological_region 513519 513524 0.999 + . logic_name=eponine scaffold_31 . biological_region 514080 514085 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 510205 511932 . - . ID=Physo134388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310098;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 510205 511932 . - . ID=Physo134388;Parent=Physo134388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 510205 510381 . - 0 ID=Physo134388;Parent=Physo134388;rank=5 scaffold_31 . exon 510205 510381 . - . ID=Physo134388.5;Parent=Physo134388;constitutive=1;rank=5 scaffold_31 . CDS 510454 510985 . - 0 ID=Physo134388;Parent=Physo134388;rank=4 scaffold_31 . exon 510454 510985 . - . ID=Physo134388.4;Parent=Physo134388;constitutive=1;ensembl_phase=2;rank=4 scaffold_31 . CDS 511053 511117 . - 0 ID=Physo134388;Parent=Physo134388;rank=3 scaffold_31 . exon 511053 511117 . - . ID=Physo134388.3;Parent=Physo134388;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_31 . CDS 511207 511295 . - 0 ID=Physo134388;Parent=Physo134388;rank=2 scaffold_31 . exon 511207 511295 . - . ID=Physo134388.2;Parent=Physo134388;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 511368 511881 . - 0 ID=Physo134388;Parent=Physo134388;rank=1 scaffold_31 . exon 511368 511932 . - . ID=Physo134388.1;Parent=Physo134388;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_31 ensembl protein_coding_gene 514029 515484 . + . ID=Physo134389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310099;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 514029 515484 . + . ID=Physo134389;Parent=Physo134389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 514029 514855 . + 0 ID=Physo134389;Parent=Physo134389;rank=1 scaffold_31 . exon 514029 514855 . + . ID=Physo134389.1;Parent=Physo134389;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 514881 515484 . + 0 ID=Physo134389;Parent=Physo134389;rank=2 scaffold_31 . exon 514881 515484 . + . ID=Physo134389.2;Parent=Physo134389;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 ensembl protein_coding_gene 517290 518787 . + . ID=Physo134390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310100;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 517290 518787 . + . ID=Physo134390;Parent=Physo134390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 517290 518108 . + 0 ID=Physo134390;Parent=Physo134390;rank=1 scaffold_31 . exon 517290 518108 . + . ID=Physo134390.1;Parent=Physo134390;constitutive=1;rank=1 scaffold_31 . CDS 518209 518424 . + 0 ID=Physo134390;Parent=Physo134390;rank=2 scaffold_31 . CDS 518485 518787 . + 0 ID=Physo134390;Parent=Physo134390;rank=3 scaffold_31 . exon 507421 507735 . + . ID=Physo156937.2;Parent=Physo156937;constitutive=1;rank=2 scaffold_31 . exon 507951 508370 . + . ID=Physo156937.3;Parent=Physo156937;constitutive=1;rank=3 scaffold_31 . exon 508433 508489 . + . ID=Physo156937.4;Parent=Physo156937;constitutive=1;rank=4 scaffold_31 . exon 508597 508639 . + . ID=Physo156937.5;Parent=Physo156937;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_31 . exon 508763 509527 . + . ID=Physo156937.6;Parent=Physo156937;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_31 . exon 509732 509994 . + . ID=Physo156937.7;Parent=Physo156937;constitutive=1;ensembl_phase=1;rank=7 scaffold_31 . repeat_region 517707 517737 . ? . description=trf scaffold_31 . repeat_region 518397 518440 . ? . description=trf scaffold_31 . repeat_region 522456 522466 . ? . description=dust scaffold_31 . repeat_region 526191 526200 . ? . description=dust scaffold_31 . exon 518209 518424 . + . ID=Physo134390.2;Parent=Physo134390;constitutive=1;rank=2 scaffold_31 . exon 518485 518787 . + . ID=Physo134390.3;Parent=Physo134390;constitutive=1;rank=3 scaffold_31 ensembl protein_coding_gene 518981 519892 . - . ID=Physo134391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310101;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 518981 519892 . - . ID=Physo134391;Parent=Physo134391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 518981 519892 . - 0 ID=Physo134391;Parent=Physo134391;rank=1 scaffold_31 . exon 518981 519892 . - . ID=Physo134391.1;Parent=Physo134391;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 521209 527178 . - . ID=Physo134392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310102;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 521209 527178 . - . ID=Physo134392;Parent=Physo134392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 521209 521727 . - 0 ID=Physo134392;Parent=Physo134392;rank=7 scaffold_31 . exon 521209 521727 . - . ID=Physo134392.7;Parent=Physo134392;constitutive=1;rank=7 scaffold_31 . CDS 521893 522244 . - 0 ID=Physo134392;Parent=Physo134392;rank=6 scaffold_31 . exon 521893 522244 . - . ID=Physo134392.6;Parent=Physo134392;constitutive=1;ensembl_phase=2;rank=6 scaffold_31 . CDS 522472 524784 . - 0 ID=Physo134392;Parent=Physo134392;rank=5 scaffold_31 . exon 522472 524784 . - . ID=Physo134392.5;Parent=Physo134392;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_31 . CDS 524816 524838 . - 0 ID=Physo134392;Parent=Physo134392;rank=4 scaffold_31 . exon 524816 524838 . - . ID=Physo134392.4;Parent=Physo134392;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_31 . CDS 525028 525525 . - 0 ID=Physo134392;Parent=Physo134392;rank=3 scaffold_31 . exon 525028 525525 . - . ID=Physo134392.3;Parent=Physo134392;constitutive=1;rank=3 scaffold_31 . CDS 525574 526176 . - 0 ID=Physo134392;Parent=Physo134392;rank=2 scaffold_31 . exon 525574 526176 . - . ID=Physo134392.2;Parent=Physo134392;constitutive=1;rank=2 scaffold_31 . CDS 526483 527178 . - 0 ID=Physo134392;Parent=Physo134392;rank=1 scaffold_31 . exon 526483 527178 . - . ID=Physo134392.1;Parent=Physo134392;constitutive=1;rank=1 scaffold_31 . biological_region 530784 530786 0.999 - . logic_name=eponine scaffold_31 . biological_region 531304 531305 0.999 - . logic_name=eponine scaffold_31 . biological_region 531357 531363 0.999 + . logic_name=eponine scaffold_31 . biological_region 531436 531442 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 533881 534282 . + . ID=Physo108783;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_310007;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 533881 534282 . + . ID=Physo108783;Parent=Physo108783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 533881 534282 . + 0 ID=Physo108783;Parent=Physo108783;rank=1 scaffold_31 . exon 533881 534282 . + . ID=Physo108783.1;Parent=Physo108783;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 527286 527940 . + . ID=Physo134393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310103;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 527286 527940 . + . ID=Physo134393;Parent=Physo134393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 527286 527447 . + 0 ID=Physo134393;Parent=Physo134393;rank=1 scaffold_31 . exon 527286 527447 . + . ID=Physo134393.1;Parent=Physo134393;constitutive=1;rank=1 scaffold_31 . CDS 527496 527571 . + 0 ID=Physo134393;Parent=Physo134393;rank=2 scaffold_31 . exon 527496 527571 . + . ID=Physo134393.2;Parent=Physo134393;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . CDS 527686 527930 . + 0 ID=Physo134393;Parent=Physo134393;rank=3 scaffold_31 . exon 527686 527940 . + . ID=Physo134393.3;Parent=Physo134393;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_31 ensembl protein_coding_gene 529480 531519 . - . ID=Physo134394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310104;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 529480 531519 . - . ID=Physo134394;Parent=Physo134394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 529480 529488 . - 0 ID=Physo134394;Parent=Physo134394;rank=10 scaffold_31 . exon 529480 529488 . - . ID=Physo134394.10;Parent=Physo134394;constitutive=1;rank=10 scaffold_31 . CDS 529640 529684 . - 0 ID=Physo134394;Parent=Physo134394;rank=9 scaffold_31 . exon 529640 529684 . - . ID=Physo134394.9;Parent=Physo134394;constitutive=1;rank=9 scaffold_31 . CDS 529704 529783 . - 0 ID=Physo134394;Parent=Physo134394;rank=8 scaffold_31 . exon 529704 529783 . - . ID=Physo134394.8;Parent=Physo134394;constitutive=1;ensembl_phase=1;rank=8 scaffold_31 . CDS 529806 529941 . - 0 ID=Physo134394;Parent=Physo134394;rank=7 scaffold_31 . exon 529806 529941 . - . ID=Physo134394.7;Parent=Physo134394;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_31 . CDS 529965 530040 . - 0 ID=Physo134394;Parent=Physo134394;rank=6 scaffold_31 . exon 529965 530040 . - . ID=Physo134394.6;Parent=Physo134394;constitutive=1;ensembl_phase=2;rank=6 scaffold_31 . CDS 530089 530214 . - 0 ID=Physo134394;Parent=Physo134394;rank=5 scaffold_31 . exon 530089 530214 . - . ID=Physo134394.5;Parent=Physo134394;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_31 . CDS 530360 530454 . - 0 ID=Physo134394;Parent=Physo134394;rank=4 scaffold_31 . exon 530360 530454 . - . ID=Physo134394.4;Parent=Physo134394;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_31 . CDS 530515 530844 . - 0 ID=Physo134394;Parent=Physo134394;rank=3 scaffold_31 . exon 530515 530844 . - . ID=Physo134394.3;Parent=Physo134394;constitutive=1;rank=3 scaffold_31 . CDS 530908 531287 . - 0 ID=Physo134394;Parent=Physo134394;rank=2 scaffold_31 . exon 530908 531287 . - . ID=Physo134394.2;Parent=Physo134394;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 531336 531519 . - 0 ID=Physo134394;Parent=Physo134394;rank=1 scaffold_31 . exon 531336 531519 . - . ID=Physo134394.1;Parent=Physo134394;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 534404 536670 . + . ID=Physo134396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310106;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 534404 536670 . + . ID=Physo134396;Parent=Physo134396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 534404 534623 . + 0 ID=Physo134396;Parent=Physo134396;rank=1 scaffold_31 . exon 534404 534623 . + . ID=Physo134396.1;Parent=Physo134396;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . CDS 534748 535167 . + 0 ID=Physo134396;Parent=Physo134396;rank=2 scaffold_31 . exon 534748 535167 . + . ID=Physo134396.2;Parent=Physo134396;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 535407 535598 . + 0 ID=Physo134396;Parent=Physo134396;rank=3 scaffold_31 . exon 535407 535598 . + . ID=Physo134396.3;Parent=Physo134396;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 535722 535829 . + 0 ID=Physo134396;Parent=Physo134396;rank=4 scaffold_31 . exon 535722 535829 . + . ID=Physo134396.4;Parent=Physo134396;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_31 . CDS 536045 536670 . + 0 ID=Physo134396;Parent=Physo134396;rank=5 scaffold_31 . exon 536045 536670 . + . ID=Physo134396.5;Parent=Physo134396;constitutive=1;ensembl_phase=1;rank=5 scaffold_31 ensembl protein_coding_gene 536864 538119 . - . ID=Physo134397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310107;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 536864 538119 . - . ID=Physo134397;Parent=Physo134397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 536864 537980 . - 0 ID=Physo134397;Parent=Physo134397;rank=2 scaffold_31 . exon 536864 537980 . - . ID=Physo134397.2;Parent=Physo134397;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 538007 538119 . - 0 ID=Physo134397;Parent=Physo134397;rank=1 scaffold_31 . repeat_region 537606 537646 . ? . description=trf scaffold_31 . repeat_region 541411 541658 . - . description=GypsyPi-1c_I-int scaffold_31 . repeat_region 541842 543214 . - . description=GypsyPi-1c_I-int scaffold_31 . exon 538007 538119 . - . ID=Physo134397.1;Parent=Physo134397;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 539371 540846 . + . ID=Physo134398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310108;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 539371 540846 . + . ID=Physo134398;Parent=Physo134398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 539371 540846 . + 0 ID=Physo134398;Parent=Physo134398;rank=1 scaffold_31 . exon 539371 540846 . + . ID=Physo134398.1;Parent=Physo134398;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 541099 544967 . - . ID=Physo134399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310109;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 541099 544967 . - . ID=Physo134399;Parent=Physo134399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 541099 541105 . - 0 ID=Physo134399;Parent=Physo134399;rank=5 scaffold_31 . exon 541099 541105 . - . ID=Physo134399.5;Parent=Physo134399;constitutive=1;ensembl_phase=2;rank=5 scaffold_31 . CDS 541146 542332 . - 0 ID=Physo134399;Parent=Physo134399;rank=4 scaffold_31 . exon 541146 542332 . - . ID=Physo134399.4;Parent=Physo134399;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_31 . CDS 542372 543008 . - 0 ID=Physo134399;Parent=Physo134399;rank=3 scaffold_31 . exon 542372 543008 . - . ID=Physo134399.3;Parent=Physo134399;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 543035 544064 . - 0 ID=Physo134399;Parent=Physo134399;rank=2 scaffold_31 . exon 543035 544064 . - . ID=Physo134399.2;Parent=Physo134399;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_31 . CDS 544661 544967 . - 0 ID=Physo134399;Parent=Physo134399;rank=1 scaffold_31 . exon 544661 544967 . - . ID=Physo134399.1;Parent=Physo134399;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 545901 546437 . + . ID=Physo134400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310110;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 545901 546437 . + . ID=Physo134400;Parent=Physo134400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 545901 546437 . + 0 ID=Physo134400;Parent=Physo134400;rank=1 scaffold_31 . exon 545901 546437 . + . ID=Physo134400.1;Parent=Physo134400;constitutive=1;rank=1 scaffold_31 . biological_region 548256 548257 0.999 + . logic_name=eponine scaffold_31 . repeat_region 548918 548925 . ? . description=dust scaffold_31 . repeat_region 550525 550547 . ? . description=dust scaffold_31 . repeat_region 550876 550889 . ? . description=dust scaffold_31 . repeat_region 552610 552659 . ? . description=dust scaffold_31 . biological_region 553976 553979 0.999 - . logic_name=eponine scaffold_31 . repeat_region 556175 556224 . ? . description=dust scaffold_31 . repeat_region 560797 560898 . ? . description=trf scaffold_31 ensembl protein_coding_gene 560251 560598 . - . ID=Physo134401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310111;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 560251 560598 . - . ID=Physo134401;Parent=Physo134401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 560251 560598 . - 0 ID=Physo134401;Parent=Physo134401;rank=1 scaffold_31 . exon 560251 560598 . - . ID=Physo134401.1;Parent=Physo134401;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 561011 562711 . + . ID=Physo134402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310112;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 561011 562711 . + . ID=Physo134402;Parent=Physo134402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 561011 561031 . + 0 ID=Physo134402;Parent=Physo134402;rank=1 scaffold_31 . exon 561011 561031 . + . ID=Physo134402.1;Parent=Physo134402;constitutive=1;rank=1 scaffold_31 . CDS 561165 562039 . + 0 ID=Physo134402;Parent=Physo134402;rank=2 scaffold_31 . exon 561165 562039 . + . ID=Physo134402.2;Parent=Physo134402;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 562059 562608 . + 0 ID=Physo134402;Parent=Physo134402;rank=3 scaffold_31 . exon 562059 562608 . + . ID=Physo134402.3;Parent=Physo134402;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 562652 562711 . + 0 ID=Physo134402;Parent=Physo134402;rank=4 scaffold_31 . exon 562652 562711 . + . ID=Physo134402.4;Parent=Physo134402;constitutive=1;rank=4 scaffold_31 . repeat_region 568380 568392 . ? . description=dust scaffold_31 . repeat_region 572954 573179 . + . description=(TATG)n scaffold_31 . repeat_region 572954 573182 . ? . description=dust scaffold_31 ensembl protein_coding_gene 568964 571269 . - . ID=Physo134403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310113;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 568964 571269 . - . ID=Physo134403;Parent=Physo134403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 568964 569118 . - 0 ID=Physo134403;Parent=Physo134403;rank=6 scaffold_31 . exon 568964 569118 . - . ID=Physo134403.6;Parent=Physo134403;constitutive=1;ensembl_phase=1;rank=6 scaffold_31 . CDS 569169 569327 . - 0 ID=Physo134403;Parent=Physo134403;rank=5 scaffold_31 . exon 569169 569327 . - . ID=Physo134403.5;Parent=Physo134403;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_31 . CDS 569626 570013 . - 0 ID=Physo134403;Parent=Physo134403;rank=4 scaffold_31 . exon 569626 570013 . - . ID=Physo134403.4;Parent=Physo134403;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_31 . CDS 570506 570565 . - 0 ID=Physo134403;Parent=Physo134403;rank=3 scaffold_31 . exon 570506 570565 . - . ID=Physo134403.3;Parent=Physo134403;constitutive=1;rank=3 scaffold_31 . CDS 570668 571068 . - 0 ID=Physo134403;Parent=Physo134403;rank=2 scaffold_31 . exon 570668 571068 . - . ID=Physo134403.2;Parent=Physo134403;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 571122 571269 . - 0 ID=Physo134403;Parent=Physo134403;rank=1 scaffold_31 . exon 571122 571269 . - . ID=Physo134403.1;Parent=Physo134403;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 574754 575692 . + . ID=Physo134404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310114;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 574754 575692 . + . ID=Physo134404;Parent=Physo134404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 574754 575692 . + 0 ID=Physo134404;Parent=Physo134404;rank=1 scaffold_31 . exon 574754 575692 . + . ID=Physo134404.1;Parent=Physo134404;constitutive=1;rank=1 scaffold_31 . repeat_region 584761 584932 . ? . description=trf scaffold_31 . repeat_region 586249 586411 . ? . description=trf scaffold_31 ensembl protein_coding_gene 581065 583041 . + . ID=Physo134405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310115;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 581065 583041 . + . ID=Physo134405;Parent=Physo134405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 581065 581259 . + 0 ID=Physo134405;Parent=Physo134405;rank=1 scaffold_31 . exon 581065 581259 . + . ID=Physo134405.1;Parent=Physo134405;constitutive=1;rank=1 scaffold_31 . CDS 581322 581478 . + 0 ID=Physo134405;Parent=Physo134405;rank=2 scaffold_31 . exon 581322 581478 . + . ID=Physo134405.2;Parent=Physo134405;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . CDS 581542 582210 . + 0 ID=Physo134405;Parent=Physo134405;rank=3 scaffold_31 . exon 581542 582210 . + . ID=Physo134405.3;Parent=Physo134405;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 582289 582919 . + 0 ID=Physo134405;Parent=Physo134405;rank=4 scaffold_31 . exon 582289 582919 . + . ID=Physo134405.4;Parent=Physo134405;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_31 . CDS 582957 583041 . + 0 ID=Physo134405;Parent=Physo134405;rank=5 scaffold_31 . exon 582957 583041 . + . ID=Physo134405.5;Parent=Physo134405;constitutive=1;ensembl_phase=2;rank=5 scaffold_31 . biological_region 587745 587746 0.999 - . logic_name=eponine scaffold_31 . biological_region 587809 587811 0.999 - . logic_name=eponine scaffold_31 . repeat_region 591812 591819 . ? . description=dust scaffold_31 . repeat_region 591862 591871 . ? . description=dust scaffold_31 . repeat_region 591936 591945 . ? . description=dust scaffold_31 . repeat_region 594436 594444 . ? . description=dust scaffold_31 ensembl protein_coding_gene 594505 596426 . + . ID=Physo156939;biotype=protein_coding;external_name=C_scaffold_31000022;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 594505 596426 . + . ID=Physo156939;Parent=Physo156939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 594505 594606 . + 0 ID=Physo156939;Parent=Physo156939;rank=1 scaffold_31 . exon 594505 594606 . + . ID=Physo156939.1;Parent=Physo156939;constitutive=1;rank=1 scaffold_31 . CDS 594700 595950 . + 0 ID=Physo156939;Parent=Physo156939;rank=2 scaffold_31 . exon 594700 595950 . + . ID=Physo156939.2;Parent=Physo156939;constitutive=1;rank=2 scaffold_31 . CDS 596037 596268 . + 0 ID=Physo156939;Parent=Physo156939;rank=3 scaffold_31 . exon 596037 596268 . + . ID=Physo156939.3;Parent=Physo156939;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_31 . CDS 596347 596426 . + 0 ID=Physo156939;Parent=Physo156939;rank=4 scaffold_31 . exon 596347 596426 . + . ID=Physo156939.4;Parent=Physo156939;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . repeat_region 601686 601735 . ? . description=trf scaffold_31 ensembl protein_coding_gene 598974 601629 . - . ID=Physo134408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310118;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 598974 601629 . - . ID=Physo134408;Parent=Physo134408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 598974 599029 . - 0 ID=Physo134408;Parent=Physo134408;rank=4 scaffold_31 . exon 598974 599029 . - . ID=Physo134408.4;Parent=Physo134408;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . CDS 599226 599498 . - 0 ID=Physo134408;Parent=Physo134408;rank=3 scaffold_31 . exon 599226 599498 . - . ID=Physo134408.3;Parent=Physo134408;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_31 . CDS 599694 599857 . - 0 ID=Physo134408;Parent=Physo134408;rank=2 scaffold_31 . exon 599694 599857 . - . ID=Physo134408.2;Parent=Physo134408;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 600278 601629 . - 0 ID=Physo134408;Parent=Physo134408;rank=1 scaffold_31 . exon 600278 601629 . - . ID=Physo134408.1;Parent=Physo134408;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 ensembl protein_coding_gene 603907 605428 . - . ID=Physo134409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310119;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 603907 605428 . - . ID=Physo134409;Parent=Physo134409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 603907 604052 . - 0 ID=Physo134409;Parent=Physo134409;rank=4 scaffold_31 . exon 603907 604052 . - . ID=Physo134409.4;Parent=Physo134409;constitutive=1;ensembl_phase=1;rank=4 scaffold_31 . CDS 604174 604582 . - 0 ID=Physo134409;Parent=Physo134409;rank=3 scaffold_31 . exon 604174 604582 . - . ID=Physo134409.3;Parent=Physo134409;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_31 . CDS 604625 605013 . - 0 ID=Physo134409;Parent=Physo134409;rank=2 scaffold_31 . exon 604625 605013 . - . ID=Physo134409.2;Parent=Physo134409;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 605413 605428 . - 0 ID=Physo134409;Parent=Physo134409;rank=1 scaffold_31 . exon 605413 605428 . - . ID=Physo134409.1;Parent=Physo134409;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 597054 598268 . + . ID=Physo156940;biotype=protein_coding;external_name=C_scaffold_31000023;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 597054 598268 . + . ID=Physo156940;Parent=Physo156940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 597054 597397 . + 0 ID=Physo156940;Parent=Physo156940;rank=1 scaffold_31 . exon 597054 597397 . + . ID=Physo156940.1;Parent=Physo156940;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 597434 597893 . + 0 ID=Physo156940;Parent=Physo156940;rank=2 scaffold_31 . exon 597434 597893 . + . ID=Physo156940.2;Parent=Physo156940;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . CDS 597918 598268 . + 0 ID=Physo156940;Parent=Physo156940;rank=3 scaffold_31 . exon 597918 598268 . + . ID=Physo156940.3;Parent=Physo156940;constitutive=1;rank=3 scaffold_31 . biological_region 607869 607872 0.999 + . logic_name=eponine scaffold_31 . repeat_region 610081 610089 . ? . description=dust scaffold_31 . repeat_region 611316 611326 . ? . description=dust scaffold_31 . biological_region 613487 613492 0.999 - . logic_name=eponine scaffold_31 . biological_region 614754 614757 0.999 + . logic_name=eponine scaffold_31 ensembl protein_coding_gene 610924 611235 . + . ID=Physo134410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310120;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 610924 611235 . + . ID=Physo134410;Parent=Physo134410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 610924 611235 . + 0 ID=Physo134410;Parent=Physo134410;rank=1 scaffold_31 . exon 610924 611235 . + . ID=Physo134410.1;Parent=Physo134410;constitutive=1;rank=1 scaffold_31 . repeat_region 618242 618290 . ? . description=trf scaffold_31 ensembl protein_coding_gene 617157 617698 . + . ID=Physo116148;biotype=protein_coding;external_name=estExt_Genewise1.C_310030;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 617157 617698 . + . ID=Physo116148;Parent=Physo116148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 617157 617698 . + . ID=Physo116148.1;Parent=Physo116148;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 617184 617696 . + 0 ID=Physo116148;Parent=Physo116148;rank=1 scaffold_31 ensembl protein_coding_gene 621696 622137 . - . ID=Physo134412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310122;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 621696 622137 . - . ID=Physo134412;Parent=Physo134412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 621696 621700 . - 0 ID=Physo134412;Parent=Physo134412;rank=2 scaffold_31 . exon 621696 621700 . - . ID=Physo134412.2;Parent=Physo134412;constitutive=1;ensembl_phase=1;rank=2 scaffold_31 . CDS 621726 622137 . - 0 ID=Physo134412;Parent=Physo134412;rank=1 scaffold_31 . exon 621726 622137 . - . ID=Physo134412.1;Parent=Physo134412;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 ensembl protein_coding_gene 618918 619684 . - . ID=Physo156944;biotype=protein_coding;external_name=C_scaffold_31000027;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 618918 619684 . - . ID=Physo156944;Parent=Physo156944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 618918 618984 . - 0 ID=Physo156944;Parent=Physo156944;rank=3 scaffold_31 . exon 618918 618984 . - . ID=Physo156944.3;Parent=Physo156944;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 619023 619171 . - 0 ID=Physo156944;Parent=Physo156944;rank=2 scaffold_31 . exon 619023 619171 . - . ID=Physo156944.2;Parent=Physo156944;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 619217 619684 . - 0 ID=Physo156944;Parent=Physo156944;rank=1 scaffold_31 . exon 619217 619684 . - . ID=Physo156944.1;Parent=Physo156944;constitutive=1;rank=1 scaffold_31 . biological_region 627365 627372 0.999 + . logic_name=eponine scaffold_31 . biological_region 628851 628857 0.999 + . logic_name=eponine scaffold_31 . biological_region 628932 628942 0.999 - . logic_name=eponine scaffold_31 . biological_region 629003 629004 0.999 - . logic_name=eponine scaffold_31 . biological_region 631695 631700 0.999 + . logic_name=eponine scaffold_31 . repeat_region 633049 633056 . ? . description=dust scaffold_31 . repeat_region 633419 633429 . ? . description=dust scaffold_31 . biological_region 635335 635339 0.999 - . logic_name=eponine scaffold_31 . repeat_region 635685 635692 . ? . description=dust scaffold_31 . repeat_region 635787 635798 . ? . description=dust scaffold_31 ensembl protein_coding_gene 630540 631983 . + . ID=Physo134413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310123;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 630540 631983 . + . ID=Physo134413;Parent=Physo134413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 630540 630711 . + . ID=Physo134413.1;Parent=Physo134413;constitutive=1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 630625 630711 . + 0 ID=Physo134413;Parent=Physo134413;rank=1 scaffold_31 . CDS 631121 631275 . + 0 ID=Physo134413;Parent=Physo134413;rank=2 scaffold_31 . exon 631121 631275 . + . ID=Physo134413.2;Parent=Physo134413;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_31 . CDS 631386 631458 . + 0 ID=Physo134413;Parent=Physo134413;rank=3 scaffold_31 . exon 631386 631458 . + . ID=Physo134413.3;Parent=Physo134413;constitutive=1;ensembl_phase=2;rank=3 scaffold_31 . CDS 631487 631759 . + 0 ID=Physo134413;Parent=Physo134413;rank=4 scaffold_31 . exon 631487 631759 . + . ID=Physo134413.4;Parent=Physo134413;constitutive=1;rank=4 scaffold_31 . CDS 631933 631983 . + 0 ID=Physo134413;Parent=Physo134413;rank=5 scaffold_31 . exon 631933 631983 . + . ID=Physo134413.5;Parent=Physo134413;constitutive=1;rank=5 scaffold_31 ensembl protein_coding_gene 634650 635139 . + . ID=Physo134414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310124;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 634650 635139 . + . ID=Physo134414;Parent=Physo134414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 634650 635139 . + . ID=Physo134414.1;Parent=Physo134414;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 634737 635138 . + 0 ID=Physo134414;Parent=Physo134414;rank=1 scaffold_31 . repeat_region 645991 646026 . ? . description=trf scaffold_31 ensembl protein_coding_gene 641998 644192 . - . ID=Physo134415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310125;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 641998 644192 . - . ID=Physo134415;Parent=Physo134415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 641998 643295 . - 0 ID=Physo134415;Parent=Physo134415;rank=5 scaffold_31 . exon 641998 643295 . - . ID=Physo134415.5;Parent=Physo134415;constitutive=1;ensembl_phase=1;rank=5 scaffold_31 . CDS 643370 643497 . - 0 ID=Physo134415;Parent=Physo134415;rank=4 scaffold_31 . exon 643370 643497 . - . ID=Physo134415.4;Parent=Physo134415;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_31 . CDS 643580 643657 . - 0 ID=Physo134415;Parent=Physo134415;rank=3 scaffold_31 . exon 643580 643657 . - . ID=Physo134415.3;Parent=Physo134415;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_31 . CDS 643724 644003 . - 0 ID=Physo134415;Parent=Physo134415;rank=2 scaffold_31 . exon 643724 644003 . - . ID=Physo134415.2;Parent=Physo134415;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_31 . CDS 644090 644192 . - 0 ID=Physo134415;Parent=Physo134415;rank=1 scaffold_31 . exon 644090 644192 . - . ID=Physo134415.1;Parent=Physo134415;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_31 . biological_region 654345 654348 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 653292 655520 . - . ID=Physo134416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310126;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 653292 655520 . - . ID=Physo134416;Parent=Physo134416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 653292 655520 . - 0 ID=Physo134416;Parent=Physo134416;rank=1 scaffold_31 . exon 653292 655520 . - . ID=Physo134416.1;Parent=Physo134416;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 656299 661619 . + . ID=Physo134417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310127;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 656299 661619 . + . ID=Physo134417;Parent=Physo134417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 656299 661326 . + 0 ID=Physo134417;Parent=Physo134417;rank=1 scaffold_31 . exon 656299 661326 . + . ID=Physo134417.1;Parent=Physo134417;constitutive=1;rank=1 scaffold_31 . CDS 661410 661619 . + 0 ID=Physo134417;Parent=Physo134417;rank=2 scaffold_31 . repeat_region 665940 665972 . ? . description=dust scaffold_31 . repeat_region 665971 666013 . ? . description=trf scaffold_31 . repeat_region 666025 666083 . ? . description=trf scaffold_31 . repeat_region 666025 666084 . ? . description=trf scaffold_31 . repeat_region 666025 666103 . ? . description=dust scaffold_31 . exon 661410 661619 . + . ID=Physo134417.2;Parent=Physo134417;constitutive=1;rank=2 scaffold_31 ensembl protein_coding_gene 661849 665687 . + . ID=Physo134418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310128;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 661849 665687 . + . ID=Physo134418;Parent=Physo134418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 661849 663033 . + 0 ID=Physo134418;Parent=Physo134418;rank=1 scaffold_31 . exon 661849 663033 . + . ID=Physo134418.1;Parent=Physo134418;constitutive=1;rank=1 scaffold_31 . CDS 663477 664020 . + 0 ID=Physo134418;Parent=Physo134418;rank=2 scaffold_31 . exon 663477 664020 . + . ID=Physo134418.2;Parent=Physo134418;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . CDS 664048 665687 . + 0 ID=Physo134418;Parent=Physo134418;rank=3 scaffold_31 . exon 664048 665687 . + . ID=Physo134418.3;Parent=Physo134418;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 ensembl protein_coding_gene 665914 667377 . - . ID=Physo156946;biotype=protein_coding;external_name=C_scaffold_31000029;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 665914 667377 . - . ID=Physo156946;Parent=Physo156946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 665914 666099 . - 0 ID=Physo156946;Parent=Physo156946;rank=2 scaffold_31 . exon 665914 666099 . - . ID=Physo156946.2;Parent=Physo156946;constitutive=1;rank=2 scaffold_31 . CDS 666130 667377 . - 0 ID=Physo156946;Parent=Physo156946;rank=1 scaffold_31 . exon 666130 667377 . - . ID=Physo156946.1;Parent=Physo156946;constitutive=1;rank=1 scaffold_31 . biological_region 666899 666901 0.999 + . logic_name=eponine scaffold_31 . biological_region 666919 666924 0.999 + . logic_name=eponine scaffold_31 . biological_region 668022 668025 0.999 - . logic_name=eponine scaffold_31 . biological_region 674708 674713 0.999 + . logic_name=eponine scaffold_31 . biological_region 674782 674782 0.999 + . logic_name=eponine scaffold_31 . biological_region 674845 674849 0.999 - . logic_name=eponine scaffold_31 . biological_region 675412 675414 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 674024 675787 . - . ID=Physo108786;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_310010;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 674024 675787 . - . ID=Physo108786;Parent=Physo108786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 674024 675787 . - 0 ID=Physo108786;Parent=Physo108786;rank=1 scaffold_31 . exon 674024 675787 . - . ID=Physo108786.1;Parent=Physo108786;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 667610 668152 . + . ID=Physo116164;biotype=protein_coding;external_name=estExt_Genewise1.C_310046;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 667610 668152 . + . ID=Physo116164;Parent=Physo116164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 667610 668152 . + 0 ID=Physo116164;Parent=Physo116164;rank=1 scaffold_31 . exon 667610 668152 . + . ID=Physo116164.1;Parent=Physo116164;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 668511 669257 . + . ID=Physo134421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310131;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 668511 669257 . + . ID=Physo134421;Parent=Physo134421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 668511 669257 . + 0 ID=Physo134421;Parent=Physo134421;rank=1 scaffold_31 . exon 668511 669257 . + . ID=Physo134421.1;Parent=Physo134421;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 672711 673818 . - . ID=Physo134423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310133;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 672711 673818 . - . ID=Physo134423;Parent=Physo134423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 672711 672974 . - 0 ID=Physo134423;Parent=Physo134423;rank=2 scaffold_31 . exon 672711 672974 . - . ID=Physo134423.2;Parent=Physo134423;constitutive=1;rank=2 scaffold_31 . CDS 673033 673818 . - 0 ID=Physo134423;Parent=Physo134423;rank=1 scaffold_31 . exon 673033 673818 . - . ID=Physo134423.1;Parent=Physo134423;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 676118 676938 . + . ID=Physo134425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_310135;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 676118 676938 . + . ID=Physo134425;Parent=Physo134425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 676118 676491 . + 0 ID=Physo134425;Parent=Physo134425;rank=1 scaffold_31 . exon 676118 676491 . + . ID=Physo134425.1;Parent=Physo134425;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_31 . CDS 676560 676938 . + 0 ID=Physo134425;Parent=Physo134425;rank=2 scaffold_31 ensembl protein_coding_gene 670705 672229 . + . ID=Physo156948;biotype=protein_coding;external_name=C_scaffold_31000031;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 670705 672229 . + . ID=Physo156948;Parent=Physo156948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 670705 671406 . + 0 ID=Physo156948;Parent=Physo156948;rank=1 scaffold_31 . exon 670705 671406 . + . ID=Physo156948.1;Parent=Physo156948;constitutive=1;rank=1 scaffold_31 . CDS 671470 672094 . + 0 ID=Physo156948;Parent=Physo156948;rank=2 scaffold_31 . exon 671470 672094 . + . ID=Physo156948.2;Parent=Physo156948;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_31 . CDS 672219 672229 . + 0 ID=Physo156948;Parent=Physo156948;rank=3 scaffold_31 . exon 672219 672229 . + . ID=Physo156948.3;Parent=Physo156948;constitutive=1;ensembl_phase=1;rank=3 scaffold_31 ensembl protein_coding_gene 676968 678176 . - . ID=Physo108787;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_310011;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 676968 678176 . - . ID=Physo108787;Parent=Physo108787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 676968 677334 . - . ID=Physo108787.2;Parent=Physo108787;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_31 . CDS 677046 677334 . - 0 ID=Physo108787;Parent=Physo108787;rank=2 scaffold_31 . CDS 677678 678159 . - 0 ID=Physo108787;Parent=Physo108787;rank=1 scaffold_31 . exon 677678 678176 . - . ID=Physo108787.1;Parent=Physo108787;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_31 ensembl protein_coding_gene 678794 680181 . - . ID=Physo108788;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_310012;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 678794 680181 . - . ID=Physo108788;Parent=Physo108788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . exon 678794 680181 . - . ID=Physo108788.1;Parent=Physo108788;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_31 . CDS 678915 680150 . - 0 ID=Physo108788;Parent=Physo108788;rank=1 scaffold_31 . exon 676560 676938 . + . ID=Physo134425.2;Parent=Physo134425;constitutive=1;ensembl_phase=2;rank=2 scaffold_31 . biological_region 687054 687058 0.999 - . logic_name=eponine scaffold_31 . repeat_region 690586 690820 . ? . description=trf scaffold_31 . biological_region 690861 690866 0.999 - . logic_name=eponine scaffold_31 . biological_region 690881 690885 0.999 - . logic_name=eponine scaffold_31 . repeat_region 691148 691216 . ? . description=trf scaffold_31 . biological_region 691333 691336 0.999 + . logic_name=eponine scaffold_31 . biological_region 691373 691375 0.999 - . logic_name=eponine scaffold_31 . biological_region 691376 691376 0.999 + . logic_name=eponine scaffold_31 . biological_region 691390 691391 0.999 + . logic_name=eponine scaffold_31 . biological_region 691449 691450 0.999 - . logic_name=eponine scaffold_31 . repeat_region 691456 691627 . ? . description=trf scaffold_31 . biological_region 691502 691507 0.999 - . logic_name=eponine scaffold_31 . biological_region 691523 691526 0.999 - . logic_name=eponine scaffold_31 . biological_region 691524 691528 0.999 + . logic_name=eponine scaffold_31 . biological_region 691537 691538 0.999 + . logic_name=eponine scaffold_31 . biological_region 691577 691582 0.999 - . logic_name=eponine scaffold_31 . biological_region 691600 691603 0.999 + . logic_name=eponine scaffold_31 . biological_region 691681 691686 0.999 + . logic_name=eponine scaffold_31 . biological_region 691761 691763 0.999 - . logic_name=eponine scaffold_31 . biological_region 691771 691773 0.999 - . logic_name=eponine scaffold_31 . biological_region 694945 694945 0.999 - . logic_name=eponine scaffold_31 ensembl protein_coding_gene 692317 692925 . - . ID=Physo116178;biotype=protein_coding;external_name=estExt_Genewise1.C_310060;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 692317 692925 . - . ID=Physo116178;Parent=Physo116178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 692317 692925 . - 0 ID=Physo116178;Parent=Physo116178;rank=1 scaffold_31 . exon 692317 692925 . - . ID=Physo116178.1;Parent=Physo116178;constitutive=1;rank=1 scaffold_31 ensembl protein_coding_gene 693373 693996 . - . ID=Physo116183;biotype=protein_coding;external_name=estExt_Genewise1.C_310065;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 693373 693996 . - . ID=Physo116183;Parent=Physo116183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 693373 693972 . - 0 ID=Physo116183;Parent=Physo116183;rank=1 scaffold_31 . exon 693373 693996 . - . ID=Physo116183.1;Parent=Physo116183;constitutive=1;ensembl_phase=-1;rank=1 scaffold_31 . repeat_region 696707 696731 . ? . description=dust scaffold_31 . repeat_region 697546 697609 . ? . description=dust scaffold_31 . repeat_region 699236 699245 . ? . description=dust scaffold_31 . repeat_region 701955 701962 . ? . description=dust scaffold_31 . repeat_region 703215 703223 . ? . description=dust scaffold_31 . repeat_region 705453 705519 . ? . description=dust scaffold_31 ensembl protein_coding_gene 704230 704559 . - . ID=Physo134429;biotype=protein_coding;description=PsAvh7a [Source:UniProtKB/TrEMBL%3BAcc:E0W506];external_name=estExt_fgenesh1_pg.C_310139;logic_name=jgi_physo1_1 scaffold_31 ensembl transcript 704230 704559 . - . ID=Physo134429;Parent=Physo134429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_31 . CDS 704230 704559 . - 0 ID=Physo134429;Parent=Physo134429;rank=1 scaffold_31 . exon 704230 704559 . - . ID=Physo134429.1;Parent=Physo134429;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_30 1 727581 scaffold_30 . repeat_region 4898 4905 . ? . description=dust scaffold_30 . biological_region 6215 6219 0.999 + . logic_name=eponine scaffold_30 . repeat_region 6860 7113 . - . description=GypsyPi-1c_I-int scaffold_30 . repeat_region 7277 7360 . ? . description=trf scaffold_30 . biological_region 7291 7294 0.999 + . logic_name=eponine scaffold_30 . repeat_region 7415 8822 . - . description=GypsyPi-1c_I-int scaffold_30 . repeat_region 8837 9525 . - . description=GypsyPi-1c_I-int scaffold_30 . biological_region 9834 9834 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 2380 3329 . - . ID=Physo134090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300001;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 2380 3329 . - . ID=Physo134090;Parent=Physo134090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 2380 2398 . - 0 ID=Physo134090;Parent=Physo134090;rank=2 scaffold_30 . exon 2380 2398 . - . ID=Physo134090.2;Parent=Physo134090;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 2581 3329 . - 0 ID=Physo134090;Parent=Physo134090;rank=1 scaffold_30 . exon 2581 3329 . - . ID=Physo134090.1;Parent=Physo134090;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 3646 4634 . + . ID=Physo134091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300002;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 3646 4634 . + . ID=Physo134091;Parent=Physo134091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 3646 3755 . + 0 ID=Physo134091;Parent=Physo134091;rank=1 scaffold_30 . exon 3646 3755 . + . ID=Physo134091.1;Parent=Physo134091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 3776 4634 . + 0 ID=Physo134091;Parent=Physo134091;rank=2 scaffold_30 . exon 3776 4634 . + . ID=Physo134091.2;Parent=Physo134091;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 ensembl protein_coding_gene 7098 10191 . - . ID=Physo134092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300003;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 7098 10191 . - . ID=Physo134092;Parent=Physo134092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 7098 7104 . - 0 ID=Physo134092;Parent=Physo134092;rank=7 scaffold_30 . exon 7098 7104 . - . ID=Physo134092.7;Parent=Physo134092;constitutive=1;ensembl_phase=2;rank=7 scaffold_30 . CDS 7148 7470 . - 0 ID=Physo134092;Parent=Physo134092;rank=6 scaffold_30 . exon 7148 7470 . - . ID=Physo134092.6;Parent=Physo134092;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_30 . CDS 7518 8059 . - 0 ID=Physo134092;Parent=Physo134092;rank=5 scaffold_30 . exon 7518 8059 . - . ID=Physo134092.5;Parent=Physo134092;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 8089 8465 . - 0 ID=Physo134092;Parent=Physo134092;rank=4 scaffold_30 . exon 8089 8465 . - . ID=Physo134092.4;Parent=Physo134092;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 8485 9499 . - 0 ID=Physo134092;Parent=Physo134092;rank=3 scaffold_30 . exon 8485 9499 . - . ID=Physo134092.3;Parent=Physo134092;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 9620 9754 . - 0 ID=Physo134092;Parent=Physo134092;rank=2 scaffold_30 . exon 9620 9754 . - . ID=Physo134092.2;Parent=Physo134092;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 9930 10191 . - 0 ID=Physo134092;Parent=Physo134092;rank=1 scaffold_30 . exon 9930 10191 . - . ID=Physo134092.1;Parent=Physo134092;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 13304 13888 . - . ID=Physo134093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300004;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 13304 13888 . - . ID=Physo134093;Parent=Physo134093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 13304 13888 . - 0 ID=Physo134093;Parent=Physo134093;rank=1 scaffold_30 . exon 13304 13888 . - . ID=Physo134093.1;Parent=Physo134093;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 17770 18480 . - . ID=Physo134094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300005;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 17770 18480 . - . ID=Physo134094;Parent=Physo134094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 17770 18480 . - 0 ID=Physo134094;Parent=Physo134094;rank=1 scaffold_30 . exon 17770 18480 . - . ID=Physo134094.1;Parent=Physo134094;constitutive=1;rank=1 scaffold_30 . repeat_region 21691 21725 . ? . description=trf scaffold_30 . repeat_region 21751 21800 . ? . description=dust scaffold_30 . repeat_region 23591 23609 . ? . description=dust scaffold_30 . biological_region 27018 27021 0.999 + . logic_name=eponine scaffold_30 . biological_region 29187 29191 0.999 + . logic_name=eponine scaffold_30 . biological_region 29257 29261 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 25187 27931 . - . ID=Physo116025;biotype=protein_coding;external_name=estExt_Genewise1.C_300143;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 25187 27931 . - . ID=Physo116025;Parent=Physo116025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 25187 26946 . - 0 ID=Physo116025;Parent=Physo116025;rank=2 scaffold_30 . exon 25187 26946 . - . ID=Physo116025.2;Parent=Physo116025;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 27031 27793 . - 0 ID=Physo116025;Parent=Physo116025;rank=1 scaffold_30 . exon 27031 27931 . - . ID=Physo116025.1;Parent=Physo116025;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 28069 28828 . + . ID=Physo116026;biotype=protein_coding;external_name=estExt_Genewise1.C_300144;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 28069 28828 . + . ID=Physo116026;Parent=Physo116026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 28069 28158 . + . ID=Physo116026.1;Parent=Physo116026;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . exon 28220 28411 . + . ID=Physo116026.2;Parent=Physo116026;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_30 . exon 28494 28583 . + . ID=Physo116026.3;Parent=Physo116026;constitutive=1;ensembl_phase=-1;rank=3 scaffold_30 . CDS 28515 28583 . + 0 ID=Physo116026;Parent=Physo116026;rank=1 scaffold_30 . CDS 28659 28826 . + 0 ID=Physo116026;Parent=Physo116026;rank=2 scaffold_30 . exon 28659 28828 . + . ID=Physo116026.4;Parent=Physo116026;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_30 ensembl protein_coding_gene 20146 21675 . + . ID=Physo134095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300006;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 20146 21675 . + . ID=Physo134095;Parent=Physo134095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 20146 21675 . + 0 ID=Physo134095;Parent=Physo134095;rank=1 scaffold_30 . exon 20146 21675 . + . ID=Physo134095.1;Parent=Physo134095;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 22563 22931 . + . ID=Physo134096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300007;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 22563 22931 . + . ID=Physo134096;Parent=Physo134096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 22563 22931 . + 0 ID=Physo134096;Parent=Physo134096;rank=1 scaffold_30 . exon 22563 22931 . + . ID=Physo134096.1;Parent=Physo134096;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 29040 29861 . - . ID=Physo156829;biotype=protein_coding;external_name=C_scaffold_30000004;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 29040 29861 . - . ID=Physo156829;Parent=Physo156829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 29040 29861 . - 0 ID=Physo156829;Parent=Physo156829;rank=1 scaffold_30 . exon 29040 29861 . - . ID=Physo156829.1;Parent=Physo156829;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 37410 39024 . + . ID=Physo134100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300011;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 37410 39024 . + . ID=Physo134100;Parent=Physo134100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 37410 37563 . + 0 ID=Physo134100;Parent=Physo134100;rank=1 scaffold_30 . exon 37410 37563 . + . ID=Physo134100.1;Parent=Physo134100;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 37664 37758 . + 0 ID=Physo134100;Parent=Physo134100;rank=2 scaffold_30 . exon 37664 37758 . + . ID=Physo134100.2;Parent=Physo134100;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 37829 37883 . + 0 ID=Physo134100;Parent=Physo134100;rank=3 scaffold_30 . exon 37829 37883 . + . ID=Physo134100.3;Parent=Physo134100;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 37963 38027 . + 0 ID=Physo134100;Parent=Physo134100;rank=4 scaffold_30 . exon 37963 38027 . + . ID=Physo134100.4;Parent=Physo134100;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 38112 38933 . + 0 ID=Physo134100;Parent=Physo134100;rank=5 scaffold_30 . exon 38112 39024 . + . ID=Physo134100.5;Parent=Physo134100;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_30 ensembl protein_coding_gene 30230 30783 . + . ID=Physo156830;biotype=protein_coding;external_name=C_scaffold_30000005;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 30230 30783 . + . ID=Physo156830;Parent=Physo156830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 30230 30569 . + 0 ID=Physo156830;Parent=Physo156830;rank=1 scaffold_30 . exon 30230 30569 . + . ID=Physo156830.1;Parent=Physo156830;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 30638 30783 . + 0 ID=Physo156830;Parent=Physo156830;rank=2 scaffold_30 . exon 30638 30783 . + . ID=Physo156830.2;Parent=Physo156830;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . repeat_region 48348 48356 . ? . description=dust scaffold_30 . repeat_region 48638 48687 . ? . description=dust scaffold_30 ensembl protein_coding_gene 42426 43062 . + . ID=Physo134101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300012;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 42426 43062 . + . ID=Physo134101;Parent=Physo134101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 42426 42947 . + 0 ID=Physo134101;Parent=Physo134101;rank=1 scaffold_30 . exon 42426 42947 . + . ID=Physo134101.1;Parent=Physo134101;constitutive=1;rank=1 scaffold_30 . CDS 43042 43062 . + 0 ID=Physo134101;Parent=Physo134101;rank=2 scaffold_30 . exon 43042 43062 . + . ID=Physo134101.2;Parent=Physo134101;constitutive=1;rank=2 scaffold_30 ensembl protein_coding_gene 44337 45599 . + . ID=Physo134102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300013;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 44337 45599 . + . ID=Physo134102;Parent=Physo134102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 44337 45112 . + 0 ID=Physo134102;Parent=Physo134102;rank=1 scaffold_30 . exon 44337 45112 . + . ID=Physo134102.1;Parent=Physo134102;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 45193 45319 . + 0 ID=Physo134102;Parent=Physo134102;rank=2 scaffold_30 . exon 45193 45319 . + . ID=Physo134102.2;Parent=Physo134102;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 45507 45599 . + 0 ID=Physo134102;Parent=Physo134102;rank=3 scaffold_30 . exon 45507 45599 . + . ID=Physo134102.3;Parent=Physo134102;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 40648 42273 . - . ID=Physo156832;biotype=protein_coding;external_name=C_scaffold_30000007;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 40648 42273 . - . ID=Physo156832;Parent=Physo156832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 40648 40653 . - 0 ID=Physo156832;Parent=Physo156832;rank=7 scaffold_30 . exon 40648 40653 . - . ID=Physo156832.7;Parent=Physo156832;constitutive=1;rank=7 scaffold_30 . CDS 40794 40917 . - 0 ID=Physo156832;Parent=Physo156832;rank=6 scaffold_30 . exon 40794 40917 . - . ID=Physo156832.6;Parent=Physo156832;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 41017 41050 . - 0 ID=Physo156832;Parent=Physo156832;rank=5 scaffold_30 . exon 41017 41050 . - . ID=Physo156832.5;Parent=Physo156832;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_30 . CDS 41150 41320 . - 0 ID=Physo156832;Parent=Physo156832;rank=4 scaffold_30 . exon 41150 41320 . - . ID=Physo156832.4;Parent=Physo156832;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 41375 41455 . - 0 ID=Physo156832;Parent=Physo156832;rank=3 scaffold_30 . exon 41375 41455 . - . ID=Physo156832.3;Parent=Physo156832;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 41624 41755 . - 0 ID=Physo156832;Parent=Physo156832;rank=2 scaffold_30 . exon 41624 41755 . - . ID=Physo156832.2;Parent=Physo156832;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 41823 42273 . - 0 ID=Physo156832;Parent=Physo156832;rank=1 scaffold_30 . exon 41823 42273 . - . ID=Physo156832.1;Parent=Physo156832;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . repeat_region 51380 51419 . ? . description=trf scaffold_30 . biological_region 51437 51444 0.999 - . logic_name=eponine scaffold_30 . biological_region 51536 51537 0.999 - . logic_name=eponine scaffold_30 . biological_region 52003 52007 0.999 - . logic_name=eponine scaffold_30 . biological_region 52274 52278 0.999 + . logic_name=eponine scaffold_30 . biological_region 52313 52316 0.999 - . logic_name=eponine scaffold_30 . biological_region 52487 52490 0.999 + . logic_name=eponine scaffold_30 . biological_region 52508 52513 0.999 - . logic_name=eponine scaffold_30 . biological_region 56091 56095 0.999 + . logic_name=eponine scaffold_30 . biological_region 57152 57152 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 51688 53319 . + . ID=Physo108750;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300001;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 51688 53319 . + . ID=Physo108750;Parent=Physo108750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 51688 51784 . + 0 ID=Physo108750;Parent=Physo108750;rank=1 scaffold_30 . exon 51688 51784 . + . ID=Physo108750.1;Parent=Physo108750;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 51857 53319 . + 0 ID=Physo108750;Parent=Physo108750;rank=2 scaffold_30 . exon 51857 53319 . + . ID=Physo108750.2;Parent=Physo108750;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 ensembl protein_coding_gene 53616 56714 . - . ID=Physo134104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300015;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 53616 56714 . - . ID=Physo134104;Parent=Physo134104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 53616 53819 . - . ID=Physo134104.2;Parent=Physo134104;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_30 . CDS 53727 53819 . - 0 ID=Physo134104;Parent=Physo134104;rank=2 scaffold_30 . CDS 53898 56714 . - 0 ID=Physo134104;Parent=Physo134104;rank=1 scaffold_30 . exon 53898 56714 . - . ID=Physo134104.1;Parent=Physo134104;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 56935 61412 . + . ID=Physo134105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300016;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 56935 61412 . + . ID=Physo134105;Parent=Physo134105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 56935 57819 . + 0 ID=Physo134105;Parent=Physo134105;rank=1 scaffold_30 . exon 56935 57819 . + . ID=Physo134105.1;Parent=Physo134105;constitutive=1;rank=1 scaffold_30 . CDS 58135 58905 . + 0 ID=Physo134105;Parent=Physo134105;rank=2 scaffold_30 . exon 58135 58905 . + . ID=Physo134105.2;Parent=Physo134105;constitutive=1;rank=2 scaffold_30 . CDS 58981 59388 . + 0 ID=Physo134105;Parent=Physo134105;rank=3 scaffold_30 . exon 58981 59388 . + . ID=Physo134105.3;Parent=Physo134105;constitutive=1;rank=3 scaffold_30 . CDS 59568 61412 . + 0 ID=Physo134105;Parent=Physo134105;rank=4 scaffold_30 . exon 59568 61412 . + . ID=Physo134105.4;Parent=Physo134105;constitutive=1;rank=4 scaffold_30 . repeat_region 63114 63159 . ? . description=dust scaffold_30 ensembl protein_coding_gene 63836 74578 . - . ID=Physo116046;biotype=protein_coding;external_name=estExt_Genewise1.C_300164;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 63836 74578 . - . ID=Physo116046;Parent=Physo116046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 63836 63962 . - 0 ID=Physo116046;Parent=Physo116046;rank=3 scaffold_30 . exon 63836 63962 . - . ID=Physo116046.3;Parent=Physo116046;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 64056 64237 . - 0 ID=Physo116046;Parent=Physo116046;rank=2 scaffold_30 . exon 64056 64237 . - . ID=Physo116046.2;Parent=Physo116046;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 64313 74473 . - 0 ID=Physo116046;Parent=Physo116046;rank=1 scaffold_30 . exon 64313 74578 . - . ID=Physo116046.1;Parent=Physo116046;constitutive=1;ensembl_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 61889 63064 . - . ID=Physo134106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300017;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 61889 63064 . - . ID=Physo134106;Parent=Physo134106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 61889 62294 . - 0 ID=Physo134106;Parent=Physo134106;rank=3 scaffold_30 . exon 61889 62294 . - . ID=Physo134106.3;Parent=Physo134106;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 62448 62839 . - 0 ID=Physo134106;Parent=Physo134106;rank=2 scaffold_30 . exon 62448 62839 . - . ID=Physo134106.2;Parent=Physo134106;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 62915 63064 . - 0 ID=Physo134106;Parent=Physo134106;rank=1 scaffold_30 . exon 62915 63064 . - . ID=Physo134106.1;Parent=Physo134106;constitutive=1;rank=1 scaffold_30 . biological_region 76676 76679 0.999 + . logic_name=eponine scaffold_30 . biological_region 76942 76947 0.999 - . logic_name=eponine scaffold_30 . biological_region 77455 77457 0.999 - . logic_name=eponine scaffold_30 . biological_region 78101 78103 0.999 - . logic_name=eponine scaffold_30 . biological_region 78849 78851 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 78684 81446 . + . ID=Physo134109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300020;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 78684 81446 . + . ID=Physo134109;Parent=Physo134109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 78684 80726 . + 0 ID=Physo134109;Parent=Physo134109;rank=1 scaffold_30 . exon 78684 80726 . + . ID=Physo134109.1;Parent=Physo134109;constitutive=1;rank=1 scaffold_30 . CDS 80804 80977 . + 0 ID=Physo134109;Parent=Physo134109;rank=2 scaffold_30 . CDS 81060 81446 . + 0 ID=Physo134109;Parent=Physo134109;rank=3 scaffold_30 . repeat_region 86286 86293 . ? . description=dust scaffold_30 . repeat_region 89430 89513 . ? . description=dust scaffold_30 . repeat_region 89689 89747 . ? . description=dust scaffold_30 . exon 80804 80977 . + . ID=Physo134109.2;Parent=Physo134109;constitutive=1;rank=2 scaffold_30 . exon 81060 81446 . + . ID=Physo134109.3;Parent=Physo134109;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 81500 82310 . - . ID=Physo134110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300021;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 81500 82310 . - . ID=Physo134110;Parent=Physo134110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 81500 81966 . - . ID=Physo134110.2;Parent=Physo134110;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_30 . CDS 81833 81966 . - 0 ID=Physo134110;Parent=Physo134110;rank=2 scaffold_30 . CDS 82049 82268 . - 0 ID=Physo134110;Parent=Physo134110;rank=1 scaffold_30 . exon 82049 82310 . - . ID=Physo134110.1;Parent=Physo134110;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 82932 83852 . + . ID=Physo134111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300022;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 82932 83852 . + . ID=Physo134111;Parent=Physo134111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 82932 83852 . + 0 ID=Physo134111;Parent=Physo134111;rank=1 scaffold_30 . exon 82932 83852 . + . ID=Physo134111.1;Parent=Physo134111;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 83995 86254 . - . ID=Physo134112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300023;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 83995 86254 . - . ID=Physo134112;Parent=Physo134112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 83995 84259 . - 0 ID=Physo134112;Parent=Physo134112;rank=3 scaffold_30 . exon 83995 84259 . - . ID=Physo134112.3;Parent=Physo134112;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 84280 85794 . - 0 ID=Physo134112;Parent=Physo134112;rank=2 scaffold_30 . exon 84280 85794 . - . ID=Physo134112.2;Parent=Physo134112;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 85920 86254 . - 0 ID=Physo134112;Parent=Physo134112;rank=1 scaffold_30 . exon 85920 86254 . - . ID=Physo134112.1;Parent=Physo134112;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 88862 89203 . + . ID=Physo134113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300024;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 88862 89203 . + . ID=Physo134113;Parent=Physo134113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 88862 89203 . + 0 ID=Physo134113;Parent=Physo134113;rank=1 scaffold_30 . exon 88862 89203 . + . ID=Physo134113.1;Parent=Physo134113;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 89369 91448 . + . ID=Physo134114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300025;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 89369 91448 . + . ID=Physo134114;Parent=Physo134114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 89369 89563 . + 0 ID=Physo134114;Parent=Physo134114;rank=1 scaffold_30 . exon 89369 89563 . + . ID=Physo134114.1;Parent=Physo134114;constitutive=1;rank=1 scaffold_30 . CDS 89644 90081 . + 0 ID=Physo134114;Parent=Physo134114;rank=2 scaffold_30 . exon 89644 90081 . + . ID=Physo134114.2;Parent=Physo134114;constitutive=1;rank=2 scaffold_30 . CDS 90339 91448 . + 0 ID=Physo134114;Parent=Physo134114;rank=3 scaffold_30 . biological_region 89702 89705 0.999 + . logic_name=eponine scaffold_30 . biological_region 89738 89738 0.999 + . logic_name=eponine scaffold_30 . biological_region 89749 89753 0.999 - . logic_name=eponine scaffold_30 . biological_region 89804 89808 0.999 + . logic_name=eponine scaffold_30 . biological_region 89812 89819 0.999 - . logic_name=eponine scaffold_30 . biological_region 89839 89845 0.999 - . logic_name=eponine scaffold_30 . biological_region 89866 89873 0.999 - . logic_name=eponine scaffold_30 . biological_region 89867 89873 0.999 + . logic_name=eponine scaffold_30 . biological_region 89878 89880 0.999 - . logic_name=eponine scaffold_30 . biological_region 89895 89910 0.999 - . logic_name=eponine scaffold_30 . biological_region 89928 89931 0.999 - . logic_name=eponine scaffold_30 . biological_region 89949 89954 0.999 + . logic_name=eponine scaffold_30 . biological_region 89992 89994 0.999 - . logic_name=eponine scaffold_30 . biological_region 90463 90467 0.999 - . logic_name=eponine scaffold_30 . biological_region 94990 94992 0.999 + . logic_name=eponine scaffold_30 . biological_region 95038 95040 0.999 + . logic_name=eponine scaffold_30 . biological_region 95049 95051 0.999 + . logic_name=eponine scaffold_30 . biological_region 95078 95084 0.999 + . logic_name=eponine scaffold_30 . biological_region 95142 95147 0.999 - . logic_name=eponine scaffold_30 . biological_region 95206 95206 0.999 - . logic_name=eponine scaffold_30 . biological_region 95314 95321 0.999 + . logic_name=eponine scaffold_30 . biological_region 95344 95349 0.999 - . logic_name=eponine scaffold_30 . biological_region 95378 95379 0.999 + . logic_name=eponine scaffold_30 . biological_region 95388 95395 0.999 - . logic_name=eponine scaffold_30 . biological_region 95400 95400 0.999 + . logic_name=eponine scaffold_30 . biological_region 95442 95448 0.999 + . logic_name=eponine scaffold_30 . biological_region 95477 95480 0.999 - . logic_name=eponine scaffold_30 . exon 90339 91448 . + . ID=Physo134114.3;Parent=Physo134114;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 94891 95568 . - . ID=Physo134115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300026;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 94891 95568 . - . ID=Physo134115;Parent=Physo134115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 94891 95568 . - 0 ID=Physo134115;Parent=Physo134115;rank=1 scaffold_30 . exon 94891 95568 . - . ID=Physo134115.1;Parent=Physo134115;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 95743 96653 . + . ID=Physo134116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300027;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 95743 96653 . + . ID=Physo134116;Parent=Physo134116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 95743 95874 . + 0 ID=Physo134116;Parent=Physo134116;rank=1 scaffold_30 . exon 95743 95874 . + . ID=Physo134116.1;Parent=Physo134116;constitutive=1;rank=1 scaffold_30 . CDS 95962 96037 . + 0 ID=Physo134116;Parent=Physo134116;rank=2 scaffold_30 . exon 95962 96037 . + . ID=Physo134116.2;Parent=Physo134116;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 96202 96337 . + 0 ID=Physo134116;Parent=Physo134116;rank=3 scaffold_30 . exon 96202 96337 . + . ID=Physo134116.3;Parent=Physo134116;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 96419 96653 . + 0 ID=Physo134116;Parent=Physo134116;rank=4 scaffold_30 . exon 96419 96653 . + . ID=Physo134116.4;Parent=Physo134116;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . repeat_region 107747 107768 . ? . description=dust scaffold_30 . repeat_region 107747 107768 . ? . description=trf scaffold_30 ensembl protein_coding_gene 106209 107450 . - . ID=Physo134119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300030;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 106209 107450 . - . ID=Physo134119;Parent=Physo134119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 106209 107450 . - 0 ID=Physo134119;Parent=Physo134119;rank=1 scaffold_30 . exon 106209 107450 . - . ID=Physo134119.1;Parent=Physo134119;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 100248 103632 . - . ID=Physo156834;biotype=protein_coding;external_name=C_scaffold_30000009;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 100248 103632 . - . ID=Physo156834;Parent=Physo156834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 100248 100298 . - 0 ID=Physo156834;Parent=Physo156834;rank=12 scaffold_30 . exon 100248 100298 . - . ID=Physo156834.12;Parent=Physo156834;constitutive=1;rank=12 scaffold_30 . CDS 100365 100436 . - 0 ID=Physo156834;Parent=Physo156834;rank=11 scaffold_30 . exon 100365 100436 . - . ID=Physo156834.11;Parent=Physo156834;constitutive=1;rank=11 scaffold_30 . CDS 100713 100878 . - 0 ID=Physo156834;Parent=Physo156834;rank=10 scaffold_30 . exon 100713 100878 . - . ID=Physo156834.10;Parent=Physo156834;constitutive=1;ensembl_phase=2;rank=10 scaffold_30 . CDS 101095 101189 . - 0 ID=Physo156834;Parent=Physo156834;rank=9 scaffold_30 . exon 101095 101189 . - . ID=Physo156834.9;Parent=Physo156834;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_30 . CDS 101244 101297 . - 0 ID=Physo156834;Parent=Physo156834;rank=8 scaffold_30 . exon 101244 101297 . - . ID=Physo156834.8;Parent=Physo156834;constitutive=1;rank=8 scaffold_30 . CDS 101365 101775 . - 0 ID=Physo156834;Parent=Physo156834;rank=7 scaffold_30 . exon 101365 101775 . - . ID=Physo156834.7;Parent=Physo156834;constitutive=1;rank=7 scaffold_30 . CDS 101842 102212 . - 0 ID=Physo156834;Parent=Physo156834;rank=6 scaffold_30 . exon 101842 102212 . - . ID=Physo156834.6;Parent=Physo156834;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 102290 102703 . - 0 ID=Physo156834;Parent=Physo156834;rank=5 scaffold_30 . exon 102290 102703 . - . ID=Physo156834.5;Parent=Physo156834;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 102725 102841 . - 0 ID=Physo156834;Parent=Physo156834;rank=4 scaffold_30 . exon 102725 102841 . - . ID=Physo156834.4;Parent=Physo156834;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 102944 103125 . - 0 ID=Physo156834;Parent=Physo156834;rank=3 scaffold_30 . exon 102944 103125 . - . ID=Physo156834.3;Parent=Physo156834;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 103196 103526 . - 0 ID=Physo156834;Parent=Physo156834;rank=2 scaffold_30 . exon 103196 103526 . - . ID=Physo156834.2;Parent=Physo156834;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . CDS 103629 103632 . - 0 ID=Physo156834;Parent=Physo156834;rank=1 scaffold_30 . exon 103629 103632 . - . ID=Physo156834.1;Parent=Physo156834;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 104110 105275 . - . ID=Physo156835;biotype=protein_coding;external_name=C_scaffold_30000010;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 104110 105275 . - . ID=Physo156835;Parent=Physo156835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 104110 104757 . - 0 ID=Physo156835;Parent=Physo156835;rank=2 scaffold_30 . exon 104110 104757 . - . ID=Physo156835.2;Parent=Physo156835;constitutive=1;rank=2 scaffold_30 . CDS 105132 105275 . - 0 ID=Physo156835;Parent=Physo156835;rank=1 scaffold_30 . exon 105132 105275 . - . ID=Physo156835.1;Parent=Physo156835;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 107655 108441 . + . ID=Physo156836;biotype=protein_coding;external_name=C_scaffold_30000011;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 107655 108441 . + . ID=Physo156836;Parent=Physo156836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 107655 108083 . + 0 ID=Physo156836;Parent=Physo156836;rank=1 scaffold_30 . exon 107655 108083 . + . ID=Physo156836.1;Parent=Physo156836;constitutive=1;rank=1 scaffold_30 . CDS 108165 108221 . + 0 ID=Physo156836;Parent=Physo156836;rank=2 scaffold_30 . exon 108165 108221 . + . ID=Physo156836.2;Parent=Physo156836;constitutive=1;rank=2 scaffold_30 . CDS 108304 108441 . + 0 ID=Physo156836;Parent=Physo156836;rank=3 scaffold_30 . exon 108304 108441 . + . ID=Physo156836.3;Parent=Physo156836;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 108763 110374 . - . ID=Physo156837;biotype=protein_coding;external_name=C_scaffold_30000012;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 108763 110374 . - . ID=Physo156837;Parent=Physo156837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 108763 108852 . - 0 ID=Physo156837;Parent=Physo156837;rank=7 scaffold_30 . exon 108763 108852 . - . ID=Physo156837.7;Parent=Physo156837;constitutive=1;rank=7 scaffold_30 . CDS 108937 108976 . - 0 ID=Physo156837;Parent=Physo156837;rank=6 scaffold_30 . exon 108937 108976 . - . ID=Physo156837.6;Parent=Physo156837;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 109051 109152 . - 0 ID=Physo156837;Parent=Physo156837;rank=5 scaffold_30 . exon 109051 109152 . - . ID=Physo156837.5;Parent=Physo156837;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_30 . CDS 109220 109404 . - 0 ID=Physo156837;Parent=Physo156837;rank=4 scaffold_30 . exon 109220 109404 . - . ID=Physo156837.4;Parent=Physo156837;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 109492 109626 . - 0 ID=Physo156837;Parent=Physo156837;rank=3 scaffold_30 . exon 109492 109626 . - . ID=Physo156837.3;Parent=Physo156837;constitutive=1;rank=3 scaffold_30 . CDS 109694 110071 . - 0 ID=Physo156837;Parent=Physo156837;rank=2 scaffold_30 . CDS 110195 110374 . - 0 ID=Physo156837;Parent=Physo156837;rank=1 scaffold_30 . biological_region 110228 110232 0.999 + . logic_name=eponine scaffold_30 . biological_region 110235 110238 0.999 - . logic_name=eponine scaffold_30 . biological_region 110288 110296 0.999 + . logic_name=eponine scaffold_30 . biological_region 110547 110550 0.999 + . logic_name=eponine scaffold_30 . biological_region 110701 110707 0.999 - . logic_name=eponine scaffold_30 . biological_region 111109 111114 0.999 + . logic_name=eponine scaffold_30 . biological_region 111611 111613 0.999 - . logic_name=eponine scaffold_30 . biological_region 111914 111919 0.999 + . logic_name=eponine scaffold_30 . biological_region 111966 111969 0.999 + . logic_name=eponine scaffold_30 . biological_region 117888 117890 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 111818 117980 . + . ID=Physo134121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300032;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 111818 117980 . + . ID=Physo134121;Parent=Physo134121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 111818 112221 . + 0 ID=Physo134121;Parent=Physo134121;rank=1 scaffold_30 . exon 111818 112221 . + . ID=Physo134121.1;Parent=Physo134121;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 112307 117980 . + 0 ID=Physo134121;Parent=Physo134121;rank=2 scaffold_30 . exon 112307 117980 . + . ID=Physo134121.2;Parent=Physo134121;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . exon 109694 110071 . - . ID=Physo156837.2;Parent=Physo156837;constitutive=1;rank=2 scaffold_30 . exon 110195 110374 . - . ID=Physo156837.1;Parent=Physo156837;constitutive=1;rank=1 scaffold_30 . repeat_region 123695 123736 . ? . description=dust scaffold_30 ensembl protein_coding_gene 120831 127595 . + . ID=Physo134122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300033;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 120831 127595 . + . ID=Physo134122;Parent=Physo134122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 120831 120936 . + 0 ID=Physo134122;Parent=Physo134122;rank=1 scaffold_30 . exon 120831 120936 . + . ID=Physo134122.1;Parent=Physo134122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 121001 121200 . + 0 ID=Physo134122;Parent=Physo134122;rank=2 scaffold_30 . exon 121001 121200 . + . ID=Physo134122.2;Parent=Physo134122;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 121222 121667 . + 0 ID=Physo134122;Parent=Physo134122;rank=3 scaffold_30 . exon 121222 121667 . + . ID=Physo134122.3;Parent=Physo134122;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 121802 127499 . + 0 ID=Physo134122;Parent=Physo134122;rank=4 scaffold_30 . exon 121802 127595 . + . ID=Physo134122.4;Parent=Physo134122;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_30 ensembl protein_coding_gene 127699 132544 . - . ID=Physo156840;biotype=protein_coding;external_name=C_scaffold_30000015;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 127699 132544 . - . ID=Physo156840;Parent=Physo156840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 127699 127940 . - 0 ID=Physo156840;Parent=Physo156840;rank=15 scaffold_30 . exon 127699 127940 . - . ID=Physo156840.15;Parent=Physo156840;constitutive=1;ensembl_phase=1;rank=15 scaffold_30 . CDS 128232 129064 . - 0 ID=Physo156840;Parent=Physo156840;rank=14 scaffold_30 . exon 128232 129064 . - . ID=Physo156840.14;Parent=Physo156840;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=14 scaffold_30 . CDS 129144 129353 . - 0 ID=Physo156840;Parent=Physo156840;rank=13 scaffold_30 . exon 129144 129353 . - . ID=Physo156840.13;Parent=Physo156840;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_30 . CDS 129447 129510 . - 0 ID=Physo156840;Parent=Physo156840;rank=12 scaffold_30 . exon 129447 129510 . - . ID=Physo156840.12;Parent=Physo156840;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_30 . CDS 129538 129763 . - 0 ID=Physo156840;Parent=Physo156840;rank=11 scaffold_30 . exon 129538 129763 . - . ID=Physo156840.11;Parent=Physo156840;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_30 . CDS 129935 130045 . - 0 ID=Physo156840;Parent=Physo156840;rank=10 scaffold_30 . CDS 130196 130432 . - 0 ID=Physo156840;Parent=Physo156840;rank=9 scaffold_30 . CDS 130478 130735 . - 0 ID=Physo156840;Parent=Physo156840;rank=8 scaffold_30 . CDS 130819 130902 . - 0 ID=Physo156840;Parent=Physo156840;rank=7 scaffold_30 . CDS 130991 131089 . - 0 ID=Physo156840;Parent=Physo156840;rank=6 scaffold_30 . CDS 131160 131258 . - 0 ID=Physo156840;Parent=Physo156840;rank=5 scaffold_30 . CDS 131339 131443 . - 0 ID=Physo156840;Parent=Physo156840;rank=4 scaffold_30 . CDS 131510 131608 . - 0 ID=Physo156840;Parent=Physo156840;rank=3 scaffold_30 . CDS 131694 131795 . - 0 ID=Physo156840;Parent=Physo156840;rank=2 scaffold_30 . CDS 131882 132544 . - 0 ID=Physo156840;Parent=Physo156840;rank=1 scaffold_30 . biological_region 132149 132150 0.999 + . logic_name=eponine scaffold_30 . biological_region 132253 132256 0.999 - . logic_name=eponine scaffold_30 . biological_region 132343 132349 0.999 + . logic_name=eponine scaffold_30 . biological_region 132382 132387 0.999 + . logic_name=eponine scaffold_30 . biological_region 132386 132389 0.999 - . logic_name=eponine scaffold_30 . biological_region 132413 132415 0.999 + . logic_name=eponine scaffold_30 . biological_region 132464 132465 0.999 + . logic_name=eponine scaffold_30 . biological_region 132758 132767 0.999 - . logic_name=eponine scaffold_30 . biological_region 134628 134630 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 134874 136232 . + . ID=Physo116069;biotype=protein_coding;external_name=estExt_Genewise1.C_300187;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 134874 136232 . + . ID=Physo116069;Parent=Physo116069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 134874 135291 . + . ID=Physo116069.1;Parent=Physo116069;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 134961 135291 . + 0 ID=Physo116069;Parent=Physo116069;rank=1 scaffold_30 . CDS 135358 136232 . + 0 ID=Physo116069;Parent=Physo116069;rank=2 scaffold_30 . exon 135358 136232 . + . ID=Physo116069.2;Parent=Physo116069;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 ensembl protein_coding_gene 136437 137631 . - . ID=Physo134125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300036;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 136437 137631 . - . ID=Physo134125;Parent=Physo134125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 136437 137230 . - . ID=Physo134125.2;Parent=Physo134125;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_30 . CDS 136505 137230 . - 0 ID=Physo134125;Parent=Physo134125;rank=2 scaffold_30 . CDS 137311 137631 . - 0 ID=Physo134125;Parent=Physo134125;rank=1 scaffold_30 . exon 137311 137631 . - . ID=Physo134125.1;Parent=Physo134125;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 138052 140015 . + . ID=Physo134126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300037;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 138052 140015 . + . ID=Physo134126;Parent=Physo134126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 138052 138062 . + 0 ID=Physo134126;Parent=Physo134126;rank=1 scaffold_30 . exon 138052 138062 . + . ID=Physo134126.1;Parent=Physo134126;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 138115 138384 . + 0 ID=Physo134126;Parent=Physo134126;rank=2 scaffold_30 . exon 138115 138384 . + . ID=Physo134126.2;Parent=Physo134126;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 138478 138586 . + 0 ID=Physo134126;Parent=Physo134126;rank=3 scaffold_30 . exon 138478 138586 . + . ID=Physo134126.3;Parent=Physo134126;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 138663 138910 . + 0 ID=Physo134126;Parent=Physo134126;rank=4 scaffold_30 . exon 138663 138910 . + . ID=Physo134126.4;Parent=Physo134126;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 139003 139069 . + 0 ID=Physo134126;Parent=Physo134126;rank=5 scaffold_30 . exon 139003 139069 . + . ID=Physo134126.5;Parent=Physo134126;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 139144 139806 . + 0 ID=Physo134126;Parent=Physo134126;rank=6 scaffold_30 . exon 139144 139806 . + . ID=Physo134126.6;Parent=Physo134126;constitutive=1;rank=6 scaffold_30 . CDS 139878 139895 . + 0 ID=Physo134126;Parent=Physo134126;rank=7 scaffold_30 . exon 129935 130045 . - . ID=Physo156840.10;Parent=Physo156840;constitutive=1;rank=10 scaffold_30 . exon 130196 130432 . - . ID=Physo156840.9;Parent=Physo156840;constitutive=1;rank=9 scaffold_30 . exon 130478 130735 . - . ID=Physo156840.8;Parent=Physo156840;constitutive=1;rank=8 scaffold_30 . exon 130819 130902 . - . ID=Physo156840.7;Parent=Physo156840;constitutive=1;rank=7 scaffold_30 . exon 130991 131089 . - . ID=Physo156840.6;Parent=Physo156840;constitutive=1;rank=6 scaffold_30 . exon 131160 131258 . - . ID=Physo156840.5;Parent=Physo156840;constitutive=1;rank=5 scaffold_30 . exon 131339 131443 . - . ID=Physo156840.4;Parent=Physo156840;constitutive=1;rank=4 scaffold_30 . exon 131510 131608 . - . ID=Physo156840.3;Parent=Physo156840;constitutive=1;rank=3 scaffold_30 . exon 131694 131795 . - . ID=Physo156840.2;Parent=Physo156840;constitutive=1;rank=2 scaffold_30 . exon 131882 132544 . - . ID=Physo156840.1;Parent=Physo156840;constitutive=1;rank=1 scaffold_30 . repeat_region 148568 148576 . ? . description=dust scaffold_30 ensembl protein_coding_gene 140191 141163 . - . ID=Physo108753;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300004;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 140191 141163 . - . ID=Physo108753;Parent=Physo108753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 140191 141163 . - . ID=Physo108753.1;Parent=Physo108753;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 140281 141129 . - 0 ID=Physo108753;Parent=Physo108753;rank=1 scaffold_30 ensembl protein_coding_gene 145085 146681 . - . ID=Physo108754;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300005;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 145085 146681 . - . ID=Physo108754;Parent=Physo108754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 145085 146681 . - . ID=Physo108754.1;Parent=Physo108754;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 145286 146650 . - 0 ID=Physo108754;Parent=Physo108754;rank=1 scaffold_30 . exon 139878 140015 . + . ID=Physo134126.7;Parent=Physo134126;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_30 ensembl protein_coding_gene 142479 143616 . + . ID=Physo134128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300039;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 142479 143616 . + . ID=Physo134128;Parent=Physo134128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 142479 142751 . + 0 ID=Physo134128;Parent=Physo134128;rank=1 scaffold_30 . exon 142479 142751 . + . ID=Physo134128.1;Parent=Physo134128;constitutive=1;rank=1 scaffold_30 . CDS 142826 142928 . + 0 ID=Physo134128;Parent=Physo134128;rank=2 scaffold_30 . exon 142826 142928 . + . ID=Physo134128.2;Parent=Physo134128;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 143010 143581 . + 0 ID=Physo134128;Parent=Physo134128;rank=3 scaffold_30 . exon 143010 143616 . + . ID=Physo134128.3;Parent=Physo134128;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_30 ensembl protein_coding_gene 147044 148245 . - . ID=Physo156844;biotype=protein_coding;external_name=C_scaffold_30000019;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 147044 148245 . - . ID=Physo156844;Parent=Physo156844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 147044 147366 . - 0 ID=Physo156844;Parent=Physo156844;rank=4 scaffold_30 . exon 147044 147366 . - . ID=Physo156844.4;Parent=Physo156844;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 147447 147684 . - 0 ID=Physo156844;Parent=Physo156844;rank=3 scaffold_30 . exon 147447 147684 . - . ID=Physo156844.3;Parent=Physo156844;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 147758 147846 . - 0 ID=Physo156844;Parent=Physo156844;rank=2 scaffold_30 . exon 147758 147846 . - . ID=Physo156844.2;Parent=Physo156844;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 147924 148245 . - 0 ID=Physo156844;Parent=Physo156844;rank=1 scaffold_30 . exon 147924 148245 . - . ID=Physo156844.1;Parent=Physo156844;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 148659 151479 . + . ID=Physo156845;biotype=protein_coding;external_name=C_scaffold_30000020;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 148659 151479 . + . ID=Physo156845;Parent=Physo156845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 148659 148700 . + 0 ID=Physo156845;Parent=Physo156845;rank=1 scaffold_30 . exon 148659 148700 . + . ID=Physo156845.1;Parent=Physo156845;constitutive=1;rank=1 scaffold_30 . CDS 148810 149043 . + 0 ID=Physo156845;Parent=Physo156845;rank=2 scaffold_30 . exon 148810 149043 . + . ID=Physo156845.2;Parent=Physo156845;constitutive=1;rank=2 scaffold_30 . CDS 149089 150007 . + 0 ID=Physo156845;Parent=Physo156845;rank=3 scaffold_30 . exon 149089 150007 . + . ID=Physo156845.3;Parent=Physo156845;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 150038 150577 . + 0 ID=Physo156845;Parent=Physo156845;rank=4 scaffold_30 . CDS 150608 151200 . + 0 ID=Physo156845;Parent=Physo156845;rank=5 scaffold_30 . CDS 151282 151479 . + 0 ID=Physo156845;Parent=Physo156845;rank=6 scaffold_30 . biological_region 149632 149634 0.999 - . logic_name=eponine scaffold_30 . biological_region 153161 153162 0.999 + . logic_name=eponine scaffold_30 . biological_region 157216 157217 0.999 + . logic_name=eponine scaffold_30 . biological_region 157664 157668 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 155458 157441 . - . ID=Physo134132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300043;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 155458 157441 . - . ID=Physo134132;Parent=Physo134132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 155458 155499 . - 0 ID=Physo134132;Parent=Physo134132;rank=4 scaffold_30 . exon 155458 155499 . - . ID=Physo134132.4;Parent=Physo134132;constitutive=1;rank=4 scaffold_30 . CDS 155583 155781 . - 0 ID=Physo134132;Parent=Physo134132;rank=3 scaffold_30 . exon 155583 155781 . - . ID=Physo134132.3;Parent=Physo134132;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 155858 156301 . - 0 ID=Physo134132;Parent=Physo134132;rank=2 scaffold_30 . exon 155858 156301 . - . ID=Physo134132.2;Parent=Physo134132;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 156438 157441 . - 0 ID=Physo134132;Parent=Physo134132;rank=1 scaffold_30 . exon 156438 157441 . - . ID=Physo134132.1;Parent=Physo134132;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . exon 150038 150577 . + . ID=Physo156845.4;Parent=Physo156845;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_30 . exon 150608 151200 . + . ID=Physo156845.5;Parent=Physo156845;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . exon 151282 151479 . + . ID=Physo156845.6;Parent=Physo156845;constitutive=1;rank=6 scaffold_30 ensembl protein_coding_gene 157612 160630 . + . ID=Physo156849;biotype=protein_coding;external_name=C_scaffold_30000024;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 157612 160630 . + . ID=Physo156849;Parent=Physo156849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 157612 157956 . + 0 ID=Physo156849;Parent=Physo156849;rank=1 scaffold_30 . exon 157612 157956 . + . ID=Physo156849.1;Parent=Physo156849;constitutive=1;rank=1 scaffold_30 . CDS 158054 158495 . + 0 ID=Physo156849;Parent=Physo156849;rank=2 scaffold_30 . exon 158054 158495 . + . ID=Physo156849.2;Parent=Physo156849;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 158571 158696 . + 0 ID=Physo156849;Parent=Physo156849;rank=3 scaffold_30 . exon 158571 158696 . + . ID=Physo156849.3;Parent=Physo156849;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 158769 158865 . + 0 ID=Physo156849;Parent=Physo156849;rank=4 scaffold_30 . exon 158769 158865 . + . ID=Physo156849.4;Parent=Physo156849;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_30 . CDS 158994 159225 . + 0 ID=Physo156849;Parent=Physo156849;rank=5 scaffold_30 . exon 158994 159225 . + . ID=Physo156849.5;Parent=Physo156849;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 159256 159977 . + 0 ID=Physo156849;Parent=Physo156849;rank=6 scaffold_30 . exon 159256 159977 . + . ID=Physo156849.6;Parent=Physo156849;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_30 . CDS 160008 160167 . + 0 ID=Physo156849;Parent=Physo156849;rank=7 scaffold_30 . CDS 160243 160372 . + 0 ID=Physo156849;Parent=Physo156849;rank=8 scaffold_30 . CDS 160397 160472 . + 0 ID=Physo156849;Parent=Physo156849;rank=9 scaffold_30 . CDS 160606 160630 . + 0 ID=Physo156849;Parent=Physo156849;rank=10 scaffold_30 . repeat_region 165018 165028 . ? . description=dust scaffold_30 . repeat_region 165464 165473 . ? . description=dust scaffold_30 ensembl protein_coding_gene 165220 166306 . + . ID=Physo134135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300046;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 165220 166306 . + . ID=Physo134135;Parent=Physo134135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 165220 165311 . + 0 ID=Physo134135;Parent=Physo134135;rank=1 scaffold_30 . exon 165220 165311 . + . ID=Physo134135.1;Parent=Physo134135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 165375 165410 . + 0 ID=Physo134135;Parent=Physo134135;rank=2 scaffold_30 . exon 165375 165410 . + . ID=Physo134135.2;Parent=Physo134135;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 165491 165548 . + 0 ID=Physo134135;Parent=Physo134135;rank=3 scaffold_30 . exon 165491 165548 . + . ID=Physo134135.3;Parent=Physo134135;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 165635 166306 . + 0 ID=Physo134135;Parent=Physo134135;rank=4 scaffold_30 . exon 165635 166306 . + . ID=Physo134135.4;Parent=Physo134135;constitutive=1;rank=4 scaffold_30 ensembl protein_coding_gene 166599 170056 . - . ID=Physo134136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300047;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 166599 170056 . - . ID=Physo134136;Parent=Physo134136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 166599 169854 . - 0 ID=Physo134136;Parent=Physo134136;rank=2 scaffold_30 . exon 166599 169854 . - . ID=Physo134136.2;Parent=Physo134136;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 169938 170056 . - 0 ID=Physo134136;Parent=Physo134136;rank=1 scaffold_30 . exon 160008 160167 . + . ID=Physo156849.7;Parent=Physo156849;constitutive=1;ensembl_phase=2;rank=7 scaffold_30 . exon 160243 160372 . + . ID=Physo156849.8;Parent=Physo156849;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_30 . exon 160397 160472 . + . ID=Physo156849.9;Parent=Physo156849;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_30 . exon 160606 160630 . + . ID=Physo156849.10;Parent=Physo156849;constitutive=1;ensembl_phase=2;rank=10 scaffold_30 ensembl protein_coding_gene 161868 164612 . - . ID=Physo156850;biotype=protein_coding;external_name=C_scaffold_30000025;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 161868 164612 . - . ID=Physo156850;Parent=Physo156850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 161868 161930 . - 0 ID=Physo156850;Parent=Physo156850;rank=4 scaffold_30 . exon 161868 161930 . - . ID=Physo156850.4;Parent=Physo156850;constitutive=1;rank=4 scaffold_30 . CDS 162210 162464 . - 0 ID=Physo156850;Parent=Physo156850;rank=3 scaffold_30 . exon 162210 162464 . - . ID=Physo156850.3;Parent=Physo156850;constitutive=1;rank=3 scaffold_30 . CDS 162567 163303 . - 0 ID=Physo156850;Parent=Physo156850;rank=2 scaffold_30 . exon 162567 163303 . - . ID=Physo156850.2;Parent=Physo156850;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 163361 164612 . - 0 ID=Physo156850;Parent=Physo156850;rank=1 scaffold_30 . exon 163361 164612 . - . ID=Physo156850.1;Parent=Physo156850;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . biological_region 170079 170085 0.999 + . logic_name=eponine scaffold_30 . biological_region 170118 170123 0.999 - . logic_name=eponine scaffold_30 . biological_region 170138 170139 0.999 - . logic_name=eponine scaffold_30 . biological_region 170173 170175 0.999 - . logic_name=eponine scaffold_30 . repeat_region 170693 170739 . ? . description=trf scaffold_30 . biological_region 170979 170980 0.999 - . logic_name=eponine scaffold_30 . repeat_region 174130 174264 . ? . description=trf scaffold_30 . repeat_region 174151 174338 . + . description=(CTG)n scaffold_30 . repeat_region 174153 174291 . ? . description=trf scaffold_30 . repeat_region 174241 174287 . ? . description=trf scaffold_30 . biological_region 174407 174408 0.999 + . logic_name=eponine scaffold_30 . biological_region 174927 174930 0.999 + . logic_name=eponine scaffold_30 . biological_region 177244 177244 0.999 + . logic_name=eponine scaffold_30 . repeat_region 177969 178012 . ? . description=trf scaffold_30 ensembl protein_coding_gene 171142 173357 . + . ID=Physo116082;biotype=protein_coding;external_name=estExt_Genewise1.C_300200;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 171142 173357 . + . ID=Physo116082;Parent=Physo116082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 171142 171284 . + . ID=Physo116082.1;Parent=Physo116082;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_30 . CDS 171220 171284 . + 0 ID=Physo116082;Parent=Physo116082;rank=1 scaffold_30 . CDS 171362 172364 . + 0 ID=Physo116082;Parent=Physo116082;rank=2 scaffold_30 . exon 171362 172364 . + . ID=Physo116082.2;Parent=Physo116082;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 172488 173029 . + 0 ID=Physo116082;Parent=Physo116082;rank=3 scaffold_30 . exon 172488 173029 . + . ID=Physo116082.3;Parent=Physo116082;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 173119 173221 . + 0 ID=Physo116082;Parent=Physo116082;rank=4 scaffold_30 . exon 173119 173221 . + . ID=Physo116082.4;Parent=Physo116082;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 173313 173357 . + 0 ID=Physo116082;Parent=Physo116082;rank=5 scaffold_30 . exon 173313 173357 . + . ID=Physo116082.5;Parent=Physo116082;constitutive=1;rank=5 scaffold_30 . exon 169938 170056 . - . ID=Physo134136.1;Parent=Physo134136;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 173735 174691 . - . ID=Physo134138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300049;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 173735 174691 . - . ID=Physo134138;Parent=Physo134138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 173735 174691 . - . ID=Physo134138.1;Parent=Physo134138;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 174003 174623 . - 0 ID=Physo134138;Parent=Physo134138;rank=1 scaffold_30 ensembl protein_coding_gene 176534 177111 . - . ID=Physo156852;biotype=protein_coding;external_name=C_scaffold_30000027;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 176534 177111 . - . ID=Physo156852;Parent=Physo156852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 176534 176867 . - 0 ID=Physo156852;Parent=Physo156852;rank=2 scaffold_30 . exon 176534 176867 . - . ID=Physo156852.2;Parent=Physo156852;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 176972 177111 . - 0 ID=Physo156852;Parent=Physo156852;rank=1 scaffold_30 . exon 176972 177111 . - . ID=Physo156852.1;Parent=Physo156852;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 178123 180551 . - . ID=Physo156853;biotype=protein_coding;external_name=C_scaffold_30000028;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 178123 180551 . - . ID=Physo156853;Parent=Physo156853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 178123 178714 . - 0 ID=Physo156853;Parent=Physo156853;rank=8 scaffold_30 . exon 178123 178714 . - . ID=Physo156853.8;Parent=Physo156853;constitutive=1;ensembl_phase=2;rank=8 scaffold_30 . CDS 178795 178964 . - 0 ID=Physo156853;Parent=Physo156853;rank=7 scaffold_30 . exon 178795 178964 . - . ID=Physo156853.7;Parent=Physo156853;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_30 . CDS 179041 179322 . - 0 ID=Physo156853;Parent=Physo156853;rank=6 scaffold_30 . exon 179041 179322 . - . ID=Physo156853.6;Parent=Physo156853;constitutive=1;rank=6 scaffold_30 . CDS 179414 179596 . - 0 ID=Physo156853;Parent=Physo156853;rank=5 scaffold_30 . CDS 179680 179763 . - 0 ID=Physo156853;Parent=Physo156853;rank=4 scaffold_30 . CDS 179842 179910 . - 0 ID=Physo156853;Parent=Physo156853;rank=3 scaffold_30 . CDS 179983 180068 . - 0 ID=Physo156853;Parent=Physo156853;rank=2 scaffold_30 . CDS 180491 180551 . - 0 ID=Physo156853;Parent=Physo156853;rank=1 scaffold_30 . repeat_region 183938 183950 . ? . description=dust scaffold_30 ensembl protein_coding_gene 186982 189291 . + . ID=Physo108757;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300008;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 186982 189291 . + . ID=Physo108757;Parent=Physo108757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 186982 187592 . + . ID=Physo108757.1;Parent=Physo108757;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 187430 187592 . + 0 ID=Physo108757;Parent=Physo108757;rank=1 scaffold_30 . CDS 187926 188752 . + 0 ID=Physo108757;Parent=Physo108757;rank=2 scaffold_30 . exon 187926 188752 . + . ID=Physo108757.2;Parent=Physo108757;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 188836 189291 . + 0 ID=Physo108757;Parent=Physo108757;rank=3 scaffold_30 . exon 188836 189291 . + . ID=Physo108757.3;Parent=Physo108757;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 180851 182560 . - . ID=Physo134141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300052;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 180851 182560 . - . ID=Physo134141;Parent=Physo134141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 180851 182560 . - 0 ID=Physo134141;Parent=Physo134141;rank=1 scaffold_30 . exon 180851 182560 . - . ID=Physo134141.1;Parent=Physo134141;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 184750 186743 . + . ID=Physo134142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300053;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 184750 186743 . + . ID=Physo134142;Parent=Physo134142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 184750 184892 . + 0 ID=Physo134142;Parent=Physo134142;rank=1 scaffold_30 . exon 184750 184892 . + . ID=Physo134142.1;Parent=Physo134142;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 184976 186743 . + 0 ID=Physo134142;Parent=Physo134142;rank=2 scaffold_30 . exon 184976 186743 . + . ID=Physo134142.2;Parent=Physo134142;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . exon 179414 179596 . - . ID=Physo156853.5;Parent=Physo156853;constitutive=1;rank=5 scaffold_30 . exon 179680 179763 . - . ID=Physo156853.4;Parent=Physo156853;constitutive=1;rank=4 scaffold_30 . exon 179842 179910 . - . ID=Physo156853.3;Parent=Physo156853;constitutive=1;rank=3 scaffold_30 . exon 179983 180068 . - . ID=Physo156853.2;Parent=Physo156853;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . exon 180491 180551 . - . ID=Physo156853.1;Parent=Physo156853;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . biological_region 195091 195095 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 208601 209663 . - . ID=Physo134145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300056;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 208601 209663 . - . ID=Physo134145;Parent=Physo134145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 208601 208604 . - 0 ID=Physo134145;Parent=Physo134145;rank=2 scaffold_30 . exon 208601 208604 . - . ID=Physo134145.2;Parent=Physo134145;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 208780 209663 . - 0 ID=Physo134145;Parent=Physo134145;rank=1 scaffold_30 . exon 208780 209663 . - . ID=Physo134145.1;Parent=Physo134145;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . repeat_region 209553 209611 . ? . description=dust scaffold_30 . biological_region 209609 209614 0.999 + . logic_name=eponine scaffold_30 . biological_region 214496 214500 0.999 + . logic_name=eponine scaffold_30 . biological_region 214931 214936 0.999 - . logic_name=eponine scaffold_30 . repeat_region 218963 219022 . ? . description=trf scaffold_30 ensembl protein_coding_gene 212931 214682 . - . ID=Physo108758;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300009;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 212931 214682 . - . ID=Physo108758;Parent=Physo108758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 212931 214682 . - . ID=Physo108758.1;Parent=Physo108758;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 213003 214610 . - 0 ID=Physo108758;Parent=Physo108758;rank=1 scaffold_30 ensembl protein_coding_gene 210016 212807 . + . ID=Physo134146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300057;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 210016 212807 . + . ID=Physo134146;Parent=Physo134146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 210016 211673 . + 0 ID=Physo134146;Parent=Physo134146;rank=1 scaffold_30 . exon 210016 211673 . + . ID=Physo134146.1;Parent=Physo134146;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 211871 212807 . + 0 ID=Physo134146;Parent=Physo134146;rank=2 scaffold_30 . exon 211871 212807 . + . ID=Physo134146.2;Parent=Physo134146;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 ensembl protein_coding_gene 217420 220390 . - . ID=Physo134148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300059;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 217420 220390 . - . ID=Physo134148;Parent=Physo134148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 217420 217472 . - 0 ID=Physo134148;Parent=Physo134148;rank=5 scaffold_30 . exon 217420 217472 . - . ID=Physo134148.5;Parent=Physo134148;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 217603 218303 . - 0 ID=Physo134148;Parent=Physo134148;rank=4 scaffold_30 . exon 217603 218303 . - . ID=Physo134148.4;Parent=Physo134148;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 218407 218506 . - 0 ID=Physo134148;Parent=Physo134148;rank=3 scaffold_30 . exon 218407 218506 . - . ID=Physo134148.3;Parent=Physo134148;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 218936 219110 . - 0 ID=Physo134148;Parent=Physo134148;rank=2 scaffold_30 . exon 218936 219110 . - . ID=Physo134148.2;Parent=Physo134148;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 219194 220390 . - 0 ID=Physo134148;Parent=Physo134148;rank=1 scaffold_30 . exon 219194 220390 . - . ID=Physo134148.1;Parent=Physo134148;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 222350 223405 . + . ID=Physo134149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300060;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 222350 223405 . + . ID=Physo134149;Parent=Physo134149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 222350 222494 . + 0 ID=Physo134149;Parent=Physo134149;rank=1 scaffold_30 . exon 222350 222494 . + . ID=Physo134149.1;Parent=Physo134149;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 222567 222703 . + 0 ID=Physo134149;Parent=Physo134149;rank=2 scaffold_30 . exon 222567 222703 . + . ID=Physo134149.2;Parent=Physo134149;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 222774 222893 . + 0 ID=Physo134149;Parent=Physo134149;rank=3 scaffold_30 . exon 222774 222893 . + . ID=Physo134149.3;Parent=Physo134149;constitutive=1;rank=3 scaffold_30 . CDS 222959 223405 . + 0 ID=Physo134149;Parent=Physo134149;rank=4 scaffold_30 . exon 222959 223405 . + . ID=Physo134149.4;Parent=Physo134149;constitutive=1;rank=4 scaffold_30 ensembl protein_coding_gene 223625 225370 . + . ID=Physo134150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300061;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 223625 225370 . + . ID=Physo134150;Parent=Physo134150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 223625 223670 . + . ID=Physo134150.1;Parent=Physo134150;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 223646 223670 . + 0 ID=Physo134150;Parent=Physo134150;rank=1 scaffold_30 . CDS 223745 223816 . + 0 ID=Physo134150;Parent=Physo134150;rank=2 scaffold_30 . exon 223745 223816 . + . ID=Physo134150.2;Parent=Physo134150;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 223910 224137 . + 0 ID=Physo134150;Parent=Physo134150;rank=3 scaffold_30 . exon 223910 224137 . + . ID=Physo134150.3;Parent=Physo134150;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 224229 224415 . + 0 ID=Physo134150;Parent=Physo134150;rank=4 scaffold_30 . exon 224229 224415 . + . ID=Physo134150.4;Parent=Physo134150;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_30 . CDS 224493 224556 . + 0 ID=Physo134150;Parent=Physo134150;rank=5 scaffold_30 . exon 224493 224556 . + . ID=Physo134150.5;Parent=Physo134150;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 224621 224921 . + 0 ID=Physo134150;Parent=Physo134150;rank=6 scaffold_30 . exon 224621 224921 . + . ID=Physo134150.6;Parent=Physo134150;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_30 . CDS 225010 225137 . + 0 ID=Physo134150;Parent=Physo134150;rank=7 scaffold_30 . exon 225010 225370 . + . ID=Physo134150.7;Parent=Physo134150;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_30 ensembl protein_coding_gene 248676 250208 . - . ID=Physo134152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300063;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 248676 250208 . - . ID=Physo134152;Parent=Physo134152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 248676 248678 . - 0 ID=Physo134152;Parent=Physo134152;rank=3 scaffold_30 . exon 248676 248678 . - . ID=Physo134152.3;Parent=Physo134152;constitutive=1;rank=3 scaffold_30 . CDS 248701 249911 . - 0 ID=Physo134152;Parent=Physo134152;rank=2 scaffold_30 . exon 248701 249911 . - . ID=Physo134152.2;Parent=Physo134152;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 249995 250208 . - 0 ID=Physo134152;Parent=Physo134152;rank=1 scaffold_30 . biological_region 250955 250956 0.999 - . logic_name=eponine scaffold_30 . biological_region 251010 251011 0.999 - . logic_name=eponine scaffold_30 . biological_region 259047 259051 0.999 + . logic_name=eponine scaffold_30 . biological_region 259088 259093 0.999 + . logic_name=eponine scaffold_30 . biological_region 259108 259113 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 256900 258713 . + . ID=Physo116098;biotype=protein_coding;external_name=estExt_Genewise1.C_300216;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 256900 258713 . + . ID=Physo116098;Parent=Physo116098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 256900 257023 . + . ID=Physo116098.1;Parent=Physo116098;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . exon 257089 257176 . + . ID=Physo116098.2;Parent=Physo116098;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_30 . exon 257241 257481 . + . ID=Physo116098.3;Parent=Physo116098;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_30 . exon 257565 257677 . + . ID=Physo116098.4;Parent=Physo116098;constitutive=1;ensembl_phase=-1;rank=4 scaffold_30 . CDS 257597 257677 . + 0 ID=Physo116098;Parent=Physo116098;rank=1 scaffold_30 . CDS 257748 257804 . + 0 ID=Physo116098;Parent=Physo116098;rank=2 scaffold_30 . exon 257748 257804 . + . ID=Physo116098.5;Parent=Physo116098;constitutive=1;rank=5 scaffold_30 . CDS 257867 258097 . + 0 ID=Physo116098;Parent=Physo116098;rank=3 scaffold_30 . exon 257867 258097 . + . ID=Physo116098.6;Parent=Physo116098;constitutive=1;rank=6 scaffold_30 . CDS 258167 258343 . + 0 ID=Physo116098;Parent=Physo116098;rank=4 scaffold_30 . exon 258167 258343 . + . ID=Physo116098.7;Parent=Physo116098;constitutive=1;rank=7 scaffold_30 . CDS 258415 258513 . + 0 ID=Physo116098;Parent=Physo116098;rank=5 scaffold_30 . exon 258415 258513 . + . ID=Physo116098.8;Parent=Physo116098;constitutive=1;rank=8 scaffold_30 . CDS 258609 258713 . + 0 ID=Physo116098;Parent=Physo116098;rank=6 scaffold_30 . exon 258609 258713 . + . ID=Physo116098.9;Parent=Physo116098;constitutive=1;rank=9 scaffold_30 . exon 249995 250208 . - . ID=Physo134152.1;Parent=Physo134152;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 251546 252955 . + . ID=Physo134153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300064;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 251546 252955 . + . ID=Physo134153;Parent=Physo134153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 251546 252955 . + 0 ID=Physo134153;Parent=Physo134153;rank=1 scaffold_30 . exon 251546 252955 . + . ID=Physo134153.1;Parent=Physo134153;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 253183 253674 . - . ID=Physo134154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300065;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 253183 253674 . - . ID=Physo134154;Parent=Physo134154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 253183 253674 . - 0 ID=Physo134154;Parent=Physo134154;rank=1 scaffold_30 . exon 253183 253674 . - . ID=Physo134154.1;Parent=Physo134154;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 254132 255094 . + . ID=Physo134155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300066;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 254132 255094 . + . ID=Physo134155;Parent=Physo134155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 254132 255043 . + 0 ID=Physo134155;Parent=Physo134155;rank=1 scaffold_30 . exon 254132 255094 . + . ID=Physo134155.1;Parent=Physo134155;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 259126 261226 . + . ID=Physo134157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300068;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 259126 261226 . + . ID=Physo134157;Parent=Physo134157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 259126 259275 . + 0 ID=Physo134157;Parent=Physo134157;rank=1 scaffold_30 . exon 259126 259275 . + . ID=Physo134157.1;Parent=Physo134157;constitutive=1;rank=1 scaffold_30 . CDS 259385 260291 . + 0 ID=Physo134157;Parent=Physo134157;rank=2 scaffold_30 . CDS 260365 260988 . + 0 ID=Physo134157;Parent=Physo134157;rank=3 scaffold_30 . CDS 261075 261133 . + 0 ID=Physo134157;Parent=Physo134157;rank=4 scaffold_30 ensembl protein_coding_gene 261378 262857 . + . ID=Physo108759;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300010;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 261378 262857 . + . ID=Physo108759;Parent=Physo108759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 261378 261434 . + . ID=Physo108759.1;Parent=Physo108759;constitutive=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 261405 261434 . + 0 ID=Physo108759;Parent=Physo108759;rank=1 scaffold_30 . CDS 261517 262555 . + 0 ID=Physo108759;Parent=Physo108759;rank=2 scaffold_30 . exon 261517 262555 . + . ID=Physo108759.2;Parent=Physo108759;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 262654 262757 . + 0 ID=Physo108759;Parent=Physo108759;rank=3 scaffold_30 . exon 262654 262857 . + . ID=Physo108759.3;Parent=Physo108759;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_30 . exon 259385 260291 . + . ID=Physo134157.2;Parent=Physo134157;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . exon 260365 260988 . + . ID=Physo134157.3;Parent=Physo134157;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_30 . exon 261075 261226 . + . ID=Physo134157.4;Parent=Physo134157;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_30 ensembl protein_coding_gene 263557 275850 . + . ID=Physo156858;biotype=protein_coding;external_name=C_scaffold_30000033;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 263557 275850 . + . ID=Physo156858;Parent=Physo156858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 263557 273283 . + 0 ID=Physo156858;Parent=Physo156858;rank=1 scaffold_30 . exon 263557 273283 . + . ID=Physo156858.1;Parent=Physo156858;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 273305 274789 . + 0 ID=Physo156858;Parent=Physo156858;rank=2 scaffold_30 . CDS 274850 275850 . + 0 ID=Physo156858;Parent=Physo156858;rank=3 scaffold_30 . repeat_region 276131 276171 . ? . description=dust scaffold_30 . repeat_region 276134 276180 . ? . description=trf scaffold_30 . repeat_region 276139 276180 . ? . description=trf scaffold_30 . biological_region 276499 276504 0.999 + . logic_name=eponine scaffold_30 . biological_region 276575 276577 0.999 - . logic_name=eponine scaffold_30 . repeat_region 277405 277442 . ? . description=dust scaffold_30 . repeat_region 277413 277442 . ? . description=trf scaffold_30 . repeat_region 278207 278232 . ? . description=dust scaffold_30 . exon 273305 274789 . + . ID=Physo156858.2;Parent=Physo156858;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . exon 274850 275850 . + . ID=Physo156858.3;Parent=Physo156858;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 ensembl protein_coding_gene 276005 276667 . - . ID=Physo156860;biotype=protein_coding;external_name=C_scaffold_30000035;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 276005 276667 . - . ID=Physo156860;Parent=Physo156860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 276005 276052 . - 0 ID=Physo156860;Parent=Physo156860;rank=3 scaffold_30 . exon 276005 276052 . - . ID=Physo156860.3;Parent=Physo156860;constitutive=1;rank=3 scaffold_30 . CDS 276079 276358 . - 0 ID=Physo156860;Parent=Physo156860;rank=2 scaffold_30 . exon 276079 276358 . - . ID=Physo156860.2;Parent=Physo156860;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 276447 276667 . - 0 ID=Physo156860;Parent=Physo156860;rank=1 scaffold_30 . exon 276447 276667 . - . ID=Physo156860.1;Parent=Physo156860;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 276964 277386 . + . ID=Physo156861;biotype=protein_coding;external_name=C_scaffold_30000036;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 276964 277386 . + . ID=Physo156861;Parent=Physo156861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 276964 277386 . + 0 ID=Physo156861;Parent=Physo156861;rank=1 scaffold_30 . exon 276964 277386 . + . ID=Physo156861.1;Parent=Physo156861;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 277574 279332 . - . ID=Physo156862;biotype=protein_coding;external_name=C_scaffold_30000037;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 277574 279332 . - . ID=Physo156862;Parent=Physo156862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 277574 277819 . - 0 ID=Physo156862;Parent=Physo156862;rank=5 scaffold_30 . exon 277574 277819 . - . ID=Physo156862.5;Parent=Physo156862;constitutive=1;rank=5 scaffold_30 . CDS 278148 278179 . - 0 ID=Physo156862;Parent=Physo156862;rank=4 scaffold_30 . exon 278148 278179 . - . ID=Physo156862.4;Parent=Physo156862;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 278279 278557 . - 0 ID=Physo156862;Parent=Physo156862;rank=3 scaffold_30 . exon 278279 278557 . - . ID=Physo156862.3;Parent=Physo156862;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 278627 278773 . - 0 ID=Physo156862;Parent=Physo156862;rank=2 scaffold_30 . exon 278627 278773 . - . ID=Physo156862.2;Parent=Physo156862;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 279059 279332 . - 0 ID=Physo156862;Parent=Physo156862;rank=1 scaffold_30 . exon 279059 279332 . - . ID=Physo156862.1;Parent=Physo156862;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 285133 286258 . - . ID=Physo108762;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300013;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 285133 286258 . - . ID=Physo108762;Parent=Physo108762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 285133 285367 . - 0 ID=Physo108762;Parent=Physo108762;rank=3 scaffold_30 . exon 285133 285367 . - . ID=Physo108762.3;Parent=Physo108762;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 285452 285736 . - 0 ID=Physo108762;Parent=Physo108762;rank=2 scaffold_30 . exon 285452 285736 . - . ID=Physo108762.2;Parent=Physo108762;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_30 . CDS 285813 286258 . - 0 ID=Physo108762;Parent=Physo108762;rank=1 scaffold_30 . exon 285813 286258 . - . ID=Physo108762.1;Parent=Physo108762;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 281751 282645 . - . ID=Physo134162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300073;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 281751 282645 . - . ID=Physo134162;Parent=Physo134162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 281751 282015 . - 0 ID=Physo134162;Parent=Physo134162;rank=3 scaffold_30 . exon 281751 282015 . - . ID=Physo134162.3;Parent=Physo134162;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 282093 282280 . - 0 ID=Physo134162;Parent=Physo134162;rank=2 scaffold_30 . exon 282093 282280 . - . ID=Physo134162.2;Parent=Physo134162;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 282349 282645 . - 0 ID=Physo134162;Parent=Physo134162;rank=1 scaffold_30 . exon 282349 282645 . - . ID=Physo134162.1;Parent=Physo134162;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 283892 284789 . + . ID=Physo134163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300074;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 283892 284789 . + . ID=Physo134163;Parent=Physo134163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 283892 284704 . + 0 ID=Physo134163;Parent=Physo134163;rank=1 scaffold_30 . exon 283892 284789 . + . ID=Physo134163.1;Parent=Physo134163;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 287572 289108 . + . ID=Physo134165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300076;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 287572 289108 . + . ID=Physo134165;Parent=Physo134165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 287572 289108 . + . ID=Physo134165.1;Parent=Physo134165;constitutive=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 288626 289108 . + 0 ID=Physo134165;Parent=Physo134165;rank=1 scaffold_30 . biological_region 290289 290290 0.999 - . logic_name=eponine scaffold_30 . biological_region 290399 290404 0.999 - . logic_name=eponine scaffold_30 . biological_region 290456 290459 0.999 + . logic_name=eponine scaffold_30 . biological_region 291699 291704 0.999 + . logic_name=eponine scaffold_30 . biological_region 293904 293907 0.999 + . logic_name=eponine scaffold_30 . repeat_region 294383 294427 . ? . description=trf scaffold_30 . biological_region 295194 295196 0.999 + . logic_name=eponine scaffold_30 . repeat_region 295509 295529 . ? . description=trf scaffold_30 . biological_region 295600 295607 0.999 + . logic_name=eponine scaffold_30 . biological_region 296189 296191 0.999 - . logic_name=eponine scaffold_30 . biological_region 296194 296195 0.999 + . logic_name=eponine scaffold_30 . biological_region 296794 296800 0.999 - . logic_name=eponine scaffold_30 . biological_region 296853 296858 0.999 - . logic_name=eponine scaffold_30 . biological_region 296932 296936 0.999 - . logic_name=eponine scaffold_30 . biological_region 297160 297162 0.999 - . logic_name=eponine scaffold_30 . biological_region 297699 297702 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 289569 291142 . + . ID=Physo134166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300077;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 289569 291142 . + . ID=Physo134166;Parent=Physo134166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 289569 289834 . + . ID=Physo134166.1;Parent=Physo134166;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 289576 289834 . + 0 ID=Physo134166;Parent=Physo134166;rank=1 scaffold_30 . CDS 289911 291142 . + 0 ID=Physo134166;Parent=Physo134166;rank=2 scaffold_30 . exon 289911 291142 . + . ID=Physo134166.2;Parent=Physo134166;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 ensembl protein_coding_gene 294073 294672 . + . ID=Physo134168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300079;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 294073 294672 . + . ID=Physo134168;Parent=Physo134168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 294073 294672 . + 0 ID=Physo134168;Parent=Physo134168;rank=1 scaffold_30 . exon 294073 294672 . + . ID=Physo134168.1;Parent=Physo134168;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 295603 296598 . - . ID=Physo134169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300080;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 295603 296598 . - . ID=Physo134169;Parent=Physo134169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 295603 296598 . - 0 ID=Physo134169;Parent=Physo134169;rank=1 scaffold_30 . exon 295603 296598 . - . ID=Physo134169.1;Parent=Physo134169;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 297293 300006 . - . ID=Physo134170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300081;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 297293 300006 . - . ID=Physo134170;Parent=Physo134170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 297293 297416 . - 0 ID=Physo134170;Parent=Physo134170;rank=2 scaffold_30 . exon 297293 297416 . - . ID=Physo134170.2;Parent=Physo134170;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 297461 300006 . - 0 ID=Physo134170;Parent=Physo134170;rank=1 scaffold_30 . exon 297461 300006 . - . ID=Physo134170.1;Parent=Physo134170;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 291772 293156 . + . ID=Physo156863;biotype=protein_coding;external_name=C_scaffold_30000038;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 291772 293156 . + . ID=Physo156863;Parent=Physo156863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 291772 293156 . + . ID=Physo156863.1;Parent=Physo156863;constitutive=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 291774 293156 . + 0 ID=Physo156863;Parent=Physo156863;rank=1 scaffold_30 ensembl protein_coding_gene 294890 295399 . + . ID=Physo156865;biotype=protein_coding;external_name=C_scaffold_30000040;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 294890 295399 . + . ID=Physo156865;Parent=Physo156865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 294890 295207 . + 0 ID=Physo156865;Parent=Physo156865;rank=1 scaffold_30 . exon 294890 295207 . + . ID=Physo156865.1;Parent=Physo156865;constitutive=1;rank=1 scaffold_30 . CDS 295250 295399 . + 0 ID=Physo156865;Parent=Physo156865;rank=2 scaffold_30 . exon 295250 295399 . + . ID=Physo156865.2;Parent=Physo156865;constitutive=1;rank=2 scaffold_30 . repeat_region 300799 300806 . ? . description=dust scaffold_30 . repeat_region 303030 303037 . ? . description=dust scaffold_30 . repeat_region 303939 303957 . ? . description=dust scaffold_30 . repeat_region 304925 304979 . ? . description=dust scaffold_30 . repeat_region 306846 306854 . ? . description=dust scaffold_30 ensembl protein_coding_gene 302193 302828 . + . ID=Physo134171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300082;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 302193 302828 . + . ID=Physo134171;Parent=Physo134171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 302193 302828 . + 0 ID=Physo134171;Parent=Physo134171;rank=1 scaffold_30 . exon 302193 302828 . + . ID=Physo134171.1;Parent=Physo134171;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 304894 306063 . + . ID=Physo134172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300083;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 304894 306063 . + . ID=Physo134172;Parent=Physo134172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 304894 305100 . + . ID=Physo134172.1;Parent=Physo134172;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 304899 305100 . + 0 ID=Physo134172;Parent=Physo134172;rank=1 scaffold_30 . CDS 305194 305291 . + 0 ID=Physo134172;Parent=Physo134172;rank=2 scaffold_30 . exon 305194 305291 . + . ID=Physo134172.2;Parent=Physo134172;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 305374 305494 . + 0 ID=Physo134172;Parent=Physo134172;rank=3 scaffold_30 . exon 305374 305494 . + . ID=Physo134172.3;Parent=Physo134172;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 305577 305881 . + 0 ID=Physo134172;Parent=Physo134172;rank=4 scaffold_30 . exon 305577 306063 . + . ID=Physo134172.4;Parent=Physo134172;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_30 ensembl protein_coding_gene 307014 308732 . + . ID=Physo134173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300084;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 307014 308732 . + . ID=Physo134173;Parent=Physo134173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 307014 308732 . + 0 ID=Physo134173;Parent=Physo134173;rank=1 scaffold_30 . exon 307014 308732 . + . ID=Physo134173.1;Parent=Physo134173;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 308840 310542 . - . ID=Physo156868;biotype=protein_coding;external_name=C_scaffold_30000043;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 308840 310542 . - . ID=Physo156868;Parent=Physo156868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 308840 309091 . - 0 ID=Physo156868;Parent=Physo156868;rank=5 scaffold_30 . exon 308840 309091 . - . ID=Physo156868.5;Parent=Physo156868;constitutive=1;rank=5 scaffold_30 . CDS 309160 309237 . - 0 ID=Physo156868;Parent=Physo156868;rank=4 scaffold_30 . CDS 309317 309509 . - 0 ID=Physo156868;Parent=Physo156868;rank=3 scaffold_30 . CDS 309579 309718 . - 0 ID=Physo156868;Parent=Physo156868;rank=2 scaffold_30 . CDS 309808 310542 . - 0 ID=Physo156868;Parent=Physo156868;rank=1 scaffold_30 . biological_region 310503 310507 0.999 - . logic_name=eponine scaffold_30 . biological_region 316371 316377 0.999 + . logic_name=eponine scaffold_30 . biological_region 317895 317897 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 315439 316472 . - . ID=Physo134175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300086;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 315439 316472 . - . ID=Physo134175;Parent=Physo134175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 315439 315456 . - 0 ID=Physo134175;Parent=Physo134175;rank=2 scaffold_30 . exon 315439 315456 . - . ID=Physo134175.2;Parent=Physo134175;constitutive=1;rank=2 scaffold_30 . CDS 315597 316472 . - 0 ID=Physo134175;Parent=Physo134175;rank=1 scaffold_30 . exon 315597 316472 . - . ID=Physo134175.1;Parent=Physo134175;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 317782 318764 . + . ID=Physo134176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300087;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 317782 318764 . + . ID=Physo134176;Parent=Physo134176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 317782 318189 . + 0 ID=Physo134176;Parent=Physo134176;rank=1 scaffold_30 . exon 317782 318189 . + . ID=Physo134176.1;Parent=Physo134176;constitutive=1;rank=1 scaffold_30 . CDS 318275 318610 . + 0 ID=Physo134176;Parent=Physo134176;rank=2 scaffold_30 . exon 318275 318764 . + . ID=Physo134176.2;Parent=Physo134176;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_30 ensembl protein_coding_gene 318757 323082 . - . ID=Physo134177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300088;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 318757 323082 . - . ID=Physo134177;Parent=Physo134177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 318757 318946 . - 0 ID=Physo134177;Parent=Physo134177;rank=6 scaffold_30 . exon 318757 318946 . - . ID=Physo134177.6;Parent=Physo134177;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 319024 319295 . - 0 ID=Physo134177;Parent=Physo134177;rank=5 scaffold_30 . CDS 319362 320327 . - 0 ID=Physo134177;Parent=Physo134177;rank=4 scaffold_30 . CDS 320382 320412 . - 0 ID=Physo134177;Parent=Physo134177;rank=3 scaffold_30 . CDS 320539 320611 . - 0 ID=Physo134177;Parent=Physo134177;rank=2 scaffold_30 . CDS 320643 323082 . - 0 ID=Physo134177;Parent=Physo134177;rank=1 scaffold_30 . exon 309160 309237 . - . ID=Physo156868.4;Parent=Physo156868;constitutive=1;rank=4 scaffold_30 . exon 309317 309509 . - . ID=Physo156868.3;Parent=Physo156868;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . exon 309579 309718 . - . ID=Physo156868.2;Parent=Physo156868;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . exon 309808 310542 . - . ID=Physo156868.1;Parent=Physo156868;constitutive=1;rank=1 scaffold_30 . exon 319024 319295 . - . ID=Physo134177.5;Parent=Physo134177;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . exon 319362 320327 . - . ID=Physo134177.4;Parent=Physo134177;constitutive=1;rank=4 scaffold_30 . exon 320382 320412 . - . ID=Physo134177.3;Parent=Physo134177;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . exon 320539 320611 . - . ID=Physo134177.2;Parent=Physo134177;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . exon 320643 323082 . - . ID=Physo134177.1;Parent=Physo134177;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 324571 325002 . - . ID=Physo134178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300089;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 324571 325002 . - . ID=Physo134178;Parent=Physo134178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 324571 325002 . - 0 ID=Physo134178;Parent=Physo134178;rank=1 scaffold_30 . exon 324571 325002 . - . ID=Physo134178.1;Parent=Physo134178;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 325356 326897 . - . ID=Physo134179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300090;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 325356 326897 . - . ID=Physo134179;Parent=Physo134179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 325356 326897 . - 0 ID=Physo134179;Parent=Physo134179;rank=1 scaffold_30 . exon 325356 326897 . - . ID=Physo134179.1;Parent=Physo134179;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 328857 332870 . - . ID=Physo134180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300091;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 328857 332870 . - . ID=Physo134180;Parent=Physo134180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 328857 332870 . - 0 ID=Physo134180;Parent=Physo134180;rank=1 scaffold_30 . exon 328857 332870 . - . ID=Physo134180.1;Parent=Physo134180;constitutive=1;rank=1 scaffold_30 . biological_region 329455 329459 0.999 - . logic_name=eponine scaffold_30 . repeat_region 333895 333951 . ? . description=trf scaffold_30 . biological_region 336138 336141 0.999 - . logic_name=eponine scaffold_30 . repeat_region 336764 336781 . ? . description=dust scaffold_30 ensembl protein_coding_gene 334085 336304 . - . ID=Physo134181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300092;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 334085 336304 . - . ID=Physo134181;Parent=Physo134181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 334085 334091 . - 0 ID=Physo134181;Parent=Physo134181;rank=4 scaffold_30 . exon 334085 334091 . - . ID=Physo134181.4;Parent=Physo134181;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 334249 335699 . - 0 ID=Physo134181;Parent=Physo134181;rank=3 scaffold_30 . exon 334249 335699 . - . ID=Physo134181.3;Parent=Physo134181;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 335785 336110 . - 0 ID=Physo134181;Parent=Physo134181;rank=2 scaffold_30 . exon 335785 336110 . - . ID=Physo134181.2;Parent=Physo134181;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 336280 336304 . - 0 ID=Physo134181;Parent=Physo134181;rank=1 scaffold_30 . exon 336280 336304 . - . ID=Physo134181.1;Parent=Physo134181;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 338851 340130 . - . ID=Physo134182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300093;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 338851 340130 . - . ID=Physo134182;Parent=Physo134182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 338851 338868 . - 0 ID=Physo134182;Parent=Physo134182;rank=2 scaffold_30 . exon 338851 338868 . - . ID=Physo134182.2;Parent=Physo134182;constitutive=1;rank=2 scaffold_30 . CDS 339312 340130 . - 0 ID=Physo134182;Parent=Physo134182;rank=1 scaffold_30 ensembl protein_coding_gene 340928 342634 . - . ID=Physo115890;biotype=protein_coding;external_name=estExt_Genewise1.C_300008;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 340928 342634 . - . ID=Physo115890;Parent=Physo115890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 340928 341125 . - 0 ID=Physo115890;Parent=Physo115890;rank=10 scaffold_30 . exon 340928 341125 . - . ID=Physo115890.11;Parent=Physo115890;constitutive=1;rank=11 scaffold_30 . CDS 341198 341275 . - 0 ID=Physo115890;Parent=Physo115890;rank=9 scaffold_30 . exon 341198 341275 . - . ID=Physo115890.10;Parent=Physo115890;constitutive=1;rank=10 scaffold_30 . CDS 341336 341447 . - 0 ID=Physo115890;Parent=Physo115890;rank=8 scaffold_30 . exon 341336 341447 . - . ID=Physo115890.9;Parent=Physo115890;constitutive=1;ensembl_phase=2;rank=9 scaffold_30 . CDS 341513 341590 . - 0 ID=Physo115890;Parent=Physo115890;rank=7 scaffold_30 . exon 341513 341590 . - . ID=Physo115890.8;Parent=Physo115890;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_30 . CDS 341663 341751 . - 0 ID=Physo115890;Parent=Physo115890;rank=6 scaffold_30 . exon 341663 341751 . - . ID=Physo115890.7;Parent=Physo115890;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_30 . CDS 341824 341867 . - 0 ID=Physo115890;Parent=Physo115890;rank=5 scaffold_30 . exon 341824 341867 . - . ID=Physo115890.6;Parent=Physo115890;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 341934 341980 . - 0 ID=Physo115890;Parent=Physo115890;rank=4 scaffold_30 . exon 341934 341980 . - . ID=Physo115890.5;Parent=Physo115890;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 342063 342141 . - 0 ID=Physo115890;Parent=Physo115890;rank=3 scaffold_30 . exon 342063 342141 . - . ID=Physo115890.4;Parent=Physo115890;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_30 . CDS 342221 342284 . - 0 ID=Physo115890;Parent=Physo115890;rank=2 scaffold_30 . exon 342221 342284 . - . ID=Physo115890.3;Parent=Physo115890;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 342373 342378 . - 0 ID=Physo115890;Parent=Physo115890;rank=1 scaffold_30 . exon 342373 342441 . - . ID=Physo115890.2;Parent=Physo115890;constitutive=1;ensembl_phase=-1;rank=2 scaffold_30 . exon 342515 342634 . - . ID=Physo115890.1;Parent=Physo115890;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . exon 339312 340130 . - . ID=Physo134182.1;Parent=Physo134182;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 342835 343757 . + . ID=Physo134183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300094;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 342835 343757 . + . ID=Physo134183;Parent=Physo134183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 342835 343182 . + 0 ID=Physo134183;Parent=Physo134183;rank=1 scaffold_30 . exon 342835 343182 . + . ID=Physo134183.1;Parent=Physo134183;constitutive=1;rank=1 scaffold_30 . CDS 343259 343657 . + 0 ID=Physo134183;Parent=Physo134183;rank=2 scaffold_30 . exon 343259 343657 . + . ID=Physo134183.2;Parent=Physo134183;constitutive=1;rank=2 scaffold_30 . CDS 343713 343757 . + 0 ID=Physo134183;Parent=Physo134183;rank=3 scaffold_30 . exon 343713 343757 . + . ID=Physo134183.3;Parent=Physo134183;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 344316 346754 . - . ID=Physo134184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300095;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 344316 346754 . - . ID=Physo134184;Parent=Physo134184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 344316 344698 . - . ID=Physo134184.6;Parent=Physo134184;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_30 . CDS 344420 344698 . - 0 ID=Physo134184;Parent=Physo134184;rank=6 scaffold_30 . CDS 344775 345027 . - 0 ID=Physo134184;Parent=Physo134184;rank=5 scaffold_30 . exon 344775 345027 . - . ID=Physo134184.5;Parent=Physo134184;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 345106 345159 . - 0 ID=Physo134184;Parent=Physo134184;rank=4 scaffold_30 . exon 345106 345159 . - . ID=Physo134184.4;Parent=Physo134184;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_30 . CDS 345234 345622 . - 0 ID=Physo134184;Parent=Physo134184;rank=3 scaffold_30 . exon 345234 345622 . - . ID=Physo134184.3;Parent=Physo134184;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 345705 345933 . - 0 ID=Physo134184;Parent=Physo134184;rank=2 scaffold_30 . exon 345705 345933 . - . ID=Physo134184.2;Parent=Physo134184;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 346015 346754 . - 0 ID=Physo134184;Parent=Physo134184;rank=1 scaffold_30 . exon 346015 346754 . - . ID=Physo134184.1;Parent=Physo134184;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 347509 348279 . + . ID=Physo134185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300096;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 347509 348279 . + . ID=Physo134185;Parent=Physo134185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 347509 348279 . + 0 ID=Physo134185;Parent=Physo134185;rank=1 scaffold_30 . exon 347509 348279 . + . ID=Physo134185.1;Parent=Physo134185;constitutive=1;rank=1 scaffold_30 . biological_region 349717 349718 0.999 + . logic_name=eponine scaffold_30 . repeat_region 350574 350585 . ? . description=dust scaffold_30 . repeat_region 350833 350845 . ? . description=dust scaffold_30 . repeat_region 350930 351871 . ? . description=trf scaffold_30 . repeat_region 351073 351082 . ? . description=dust scaffold_30 . repeat_region 351901 351986 . ? . description=trf scaffold_30 . repeat_region 351905 352003 . ? . description=trf scaffold_30 . repeat_region 352603 354928 . - . description=GypsyPi-1c_I-int scaffold_30 . biological_region 353153 353153 0.999 - . logic_name=eponine scaffold_30 . biological_region 355274 355275 0.999 - . logic_name=eponine scaffold_30 . biological_region 355361 355363 0.999 - . logic_name=eponine scaffold_30 . biological_region 355463 355464 0.999 + . logic_name=eponine scaffold_30 . biological_region 355996 355997 0.999 - . logic_name=eponine scaffold_30 . biological_region 356034 356035 0.999 - . logic_name=eponine scaffold_30 . biological_region 356073 356079 0.999 - . logic_name=eponine scaffold_30 . biological_region 356088 356093 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 352702 355299 . - . ID=Physo134186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300097;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 352702 355299 . - . ID=Physo134186;Parent=Physo134186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 352702 353022 . - 0 ID=Physo134186;Parent=Physo134186;rank=3 scaffold_30 . exon 352702 353022 . - . ID=Physo134186.3;Parent=Physo134186;constitutive=1;rank=3 scaffold_30 . CDS 353147 354731 . - 0 ID=Physo134186;Parent=Physo134186;rank=2 scaffold_30 . exon 353147 354731 . - . ID=Physo134186.2;Parent=Physo134186;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 354806 355299 . - 0 ID=Physo134186;Parent=Physo134186;rank=1 scaffold_30 . exon 354806 355299 . - . ID=Physo134186.1;Parent=Physo134186;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 364907 366212 . - . ID=Physo108763;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300014;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 364907 366212 . - . ID=Physo108763;Parent=Physo108763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 364907 365317 . - . ID=Physo108763.5;Parent=Physo108763;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_30 . CDS 365226 365317 . - 0 ID=Physo108763;Parent=Physo108763;rank=4 scaffold_30 . CDS 365395 365566 . - 0 ID=Physo108763;Parent=Physo108763;rank=3 scaffold_30 . exon 365395 365566 . - . ID=Physo108763.4;Parent=Physo108763;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 365639 365694 . - 0 ID=Physo108763;Parent=Physo108763;rank=2 scaffold_30 . exon 365639 365694 . - . ID=Physo108763.3;Parent=Physo108763;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 365777 365807 . - 0 ID=Physo108763;Parent=Physo108763;rank=1 scaffold_30 . exon 365777 365878 . - . ID=Physo108763.2;Parent=Physo108763;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_30 . exon 366189 366212 . - . ID=Physo108763.1;Parent=Physo108763;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 367433 369077 . + . ID=Physo108764;biotype=protein_coding;description=Ras-like protein [Source:UniProtKB/TrEMBL%3BAcc:Q2QA40];external_name=YPT1;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 367433 369077 . + . ID=Physo108764;Parent=Physo108764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 367433 367502 . + . ID=Physo108764.1;Parent=Physo108764;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . exon 367740 367798 . + . ID=Physo108764.2;Parent=Physo108764;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_30 . CDS 367785 367798 . + 0 ID=Physo108764;Parent=Physo108764;rank=1 scaffold_30 . CDS 367875 367995 . + 0 ID=Physo108764;Parent=Physo108764;rank=2 scaffold_30 . exon 367875 367995 . + . ID=Physo108764.3;Parent=Physo108764;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 368109 368156 . + 0 ID=Physo108764;Parent=Physo108764;rank=3 scaffold_30 . exon 368109 368156 . + . ID=Physo108764.4;Parent=Physo108764;constitutive=1;rank=4 scaffold_30 . CDS 368242 368381 . + 0 ID=Physo108764;Parent=Physo108764;rank=4 scaffold_30 . exon 368242 368381 . + . ID=Physo108764.5;Parent=Physo108764;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . CDS 368459 368741 . + 0 ID=Physo108764;Parent=Physo108764;rank=5 scaffold_30 . exon 368459 369077 . + . ID=Physo108764.6;Parent=Physo108764;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_30 ensembl protein_coding_gene 361442 362976 . + . ID=Physo156870;biotype=protein_coding;external_name=C_scaffold_30000045;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 361442 362976 . + . ID=Physo156870;Parent=Physo156870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 361442 361669 . + 0 ID=Physo156870;Parent=Physo156870;rank=1 scaffold_30 . exon 361442 361669 . + . ID=Physo156870.1;Parent=Physo156870;constitutive=1;rank=1 scaffold_30 . CDS 361694 361867 . + 0 ID=Physo156870;Parent=Physo156870;rank=2 scaffold_30 . exon 361694 361867 . + . ID=Physo156870.2;Parent=Physo156870;constitutive=1;rank=2 scaffold_30 . CDS 361895 362351 . + 0 ID=Physo156870;Parent=Physo156870;rank=3 scaffold_30 . exon 361895 362351 . + . ID=Physo156870.3;Parent=Physo156870;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 362400 362632 . + 0 ID=Physo156870;Parent=Physo156870;rank=4 scaffold_30 . exon 362400 362632 . + . ID=Physo156870.4;Parent=Physo156870;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 362968 362976 . + 0 ID=Physo156870;Parent=Physo156870;rank=5 scaffold_30 . exon 362968 362976 . + . ID=Physo156870.5;Parent=Physo156870;constitutive=1;rank=5 scaffold_30 . biological_region 370097 370098 0.999 + . logic_name=eponine scaffold_30 . biological_region 370155 370161 0.999 - . logic_name=eponine scaffold_30 . biological_region 372386 372388 0.999 + . logic_name=eponine scaffold_30 . biological_region 375514 375516 0.999 - . logic_name=eponine scaffold_30 . repeat_region 375710 375733 . ? . description=dust scaffold_30 . biological_region 377733 377733 0.999 - . logic_name=eponine scaffold_30 . repeat_region 378246 378282 . ? . description=trf scaffold_30 ensembl protein_coding_gene 370330 371484 . + . ID=Physo134190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300101;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 370330 371484 . + . ID=Physo134190;Parent=Physo134190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 370330 371484 . + 0 ID=Physo134190;Parent=Physo134190;rank=1 scaffold_30 . exon 370330 371484 . + . ID=Physo134190.1;Parent=Physo134190;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 371649 372778 . - . ID=Physo134191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300102;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 371649 372778 . - . ID=Physo134191;Parent=Physo134191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 371649 372600 . - 0 ID=Physo134191;Parent=Physo134191;rank=2 scaffold_30 . exon 371649 372600 . - . ID=Physo134191.2;Parent=Physo134191;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 372683 372750 . - 0 ID=Physo134191;Parent=Physo134191;rank=1 scaffold_30 . exon 372683 372778 . - . ID=Physo134191.1;Parent=Physo134191;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 374899 376226 . + . ID=Physo134192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300103;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 374899 376226 . + . ID=Physo134192;Parent=Physo134192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 374899 375692 . + 0 ID=Physo134192;Parent=Physo134192;rank=1 scaffold_30 . exon 374899 375692 . + . ID=Physo134192.1;Parent=Physo134192;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 375764 376226 . + 0 ID=Physo134192;Parent=Physo134192;rank=2 scaffold_30 . exon 375764 376226 . + . ID=Physo134192.2;Parent=Physo134192;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 ensembl protein_coding_gene 376485 377558 . - . ID=Physo134193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300104;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 376485 377558 . - . ID=Physo134193;Parent=Physo134193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 376485 376967 . - 0 ID=Physo134193;Parent=Physo134193;rank=3 scaffold_30 . exon 376485 376967 . - . ID=Physo134193.3;Parent=Physo134193;constitutive=1;rank=3 scaffold_30 . CDS 377055 377151 . - 0 ID=Physo134193;Parent=Physo134193;rank=2 scaffold_30 . exon 377055 377151 . - . ID=Physo134193.2;Parent=Physo134193;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 377227 377558 . - 0 ID=Physo134193;Parent=Physo134193;rank=1 scaffold_30 . exon 377227 377558 . - . ID=Physo134193.1;Parent=Physo134193;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 377911 378657 . + . ID=Physo134194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300105;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 377911 378657 . + . ID=Physo134194;Parent=Physo134194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 377911 378195 . + 0 ID=Physo134194;Parent=Physo134194;rank=1 scaffold_30 . exon 377911 378195 . + . ID=Physo134194.1;Parent=Physo134194;constitutive=1;rank=1 scaffold_30 . CDS 378304 378417 . + 0 ID=Physo134194;Parent=Physo134194;rank=2 scaffold_30 . exon 378304 378417 . + . ID=Physo134194.2;Parent=Physo134194;constitutive=1;rank=2 scaffold_30 . CDS 378502 378657 . + 0 ID=Physo134194;Parent=Physo134194;rank=3 scaffold_30 . exon 378502 378657 . + . ID=Physo134194.3;Parent=Physo134194;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 385423 388044 . + . ID=Physo134195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300106;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 385423 388044 . + . ID=Physo134195;Parent=Physo134195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 385423 388044 . + 0 ID=Physo134195;Parent=Physo134195;rank=1 scaffold_30 . exon 385423 388044 . + . ID=Physo134195.1;Parent=Physo134195;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 388566 389136 . - . ID=Physo134196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300107;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 388566 389136 . - . ID=Physo134196;Parent=Physo134196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 388566 388606 . - 0 ID=Physo134196;Parent=Physo134196;rank=2 scaffold_30 . exon 388566 388606 . - . ID=Physo134196.2;Parent=Physo134196;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 388686 389136 . - 0 ID=Physo134196;Parent=Physo134196;rank=1 scaffold_30 . exon 388686 389136 . - . ID=Physo134196.1;Parent=Physo134196;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . repeat_region 389233 389273 . ? . description=trf scaffold_30 . repeat_region 389324 389331 . ? . description=dust scaffold_30 . biological_region 390946 390946 0.999 - . logic_name=eponine scaffold_30 . biological_region 391000 391006 0.999 + . logic_name=eponine scaffold_30 . biological_region 391051 391053 0.999 + . logic_name=eponine scaffold_30 . biological_region 391149 391151 0.999 - . logic_name=eponine scaffold_30 . biological_region 391185 391194 0.999 - . logic_name=eponine scaffold_30 . repeat_region 394930 394937 . ? . description=dust scaffold_30 . biological_region 396805 396809 0.999 - . logic_name=eponine scaffold_30 . biological_region 396821 396822 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 391111 393876 . + . ID=Physo134197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300108;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 391111 393876 . + . ID=Physo134197;Parent=Physo134197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 391111 393876 . + 0 ID=Physo134197;Parent=Physo134197;rank=1 scaffold_30 . exon 391111 393876 . + . ID=Physo134197.1;Parent=Physo134197;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 394135 395115 . + . ID=Physo134198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300109;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 394135 395115 . + . ID=Physo134198;Parent=Physo134198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 394135 394328 . + 0 ID=Physo134198;Parent=Physo134198;rank=1 scaffold_30 . exon 394135 394328 . + . ID=Physo134198.1;Parent=Physo134198;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 394394 394518 . + 0 ID=Physo134198;Parent=Physo134198;rank=2 scaffold_30 . exon 394394 394518 . + . ID=Physo134198.2;Parent=Physo134198;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 394584 394725 . + 0 ID=Physo134198;Parent=Physo134198;rank=3 scaffold_30 . exon 394584 394725 . + . ID=Physo134198.3;Parent=Physo134198;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 394800 394908 . + 0 ID=Physo134198;Parent=Physo134198;rank=4 scaffold_30 . exon 394800 394908 . + . ID=Physo134198.4;Parent=Physo134198;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 394978 395115 . + 0 ID=Physo134198;Parent=Physo134198;rank=5 scaffold_30 . exon 394978 395115 . + . ID=Physo134198.5;Parent=Physo134198;constitutive=1;rank=5 scaffold_30 ensembl protein_coding_gene 395260 398447 . - . ID=Physo156878;biotype=protein_coding;external_name=C_scaffold_30000053;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 395260 398447 . - . ID=Physo156878;Parent=Physo156878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 395260 395957 . - 0 ID=Physo156878;Parent=Physo156878;rank=4 scaffold_30 . exon 395260 395957 . - . ID=Physo156878.4;Parent=Physo156878;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 395994 396599 . - 0 ID=Physo156878;Parent=Physo156878;rank=3 scaffold_30 . exon 395994 396599 . - . ID=Physo156878.3;Parent=Physo156878;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 396726 396882 . - 0 ID=Physo156878;Parent=Physo156878;rank=2 scaffold_30 . exon 396726 396882 . - . ID=Physo156878.2;Parent=Physo156878;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 396963 398447 . - 0 ID=Physo156878;Parent=Physo156878;rank=1 scaffold_30 . exon 396963 398447 . - . ID=Physo156878.1;Parent=Physo156878;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 399240 401177 . + . ID=Physo108765;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300016;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 399240 401177 . + . ID=Physo108765;Parent=Physo108765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 399240 401177 . + 0 ID=Physo108765;Parent=Physo108765;rank=1 scaffold_30 . exon 399240 401177 . + . ID=Physo108765.1;Parent=Physo108765;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 401402 403845 . - . ID=Physo134201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300112;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 401402 403845 . - . ID=Physo134201;Parent=Physo134201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 401402 401704 . - . ID=Physo134201.6;Parent=Physo134201;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_30 . CDS 401462 401704 . - 0 ID=Physo134201;Parent=Physo134201;rank=6 scaffold_30 . CDS 401767 402504 . - 0 ID=Physo134201;Parent=Physo134201;rank=5 scaffold_30 . exon 401767 402504 . - . ID=Physo134201.5;Parent=Physo134201;constitutive=1;rank=5 scaffold_30 . CDS 402578 402608 . - 0 ID=Physo134201;Parent=Physo134201;rank=4 scaffold_30 . exon 402578 402608 . - . ID=Physo134201.4;Parent=Physo134201;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 402688 403570 . - 0 ID=Physo134201;Parent=Physo134201;rank=3 scaffold_30 . exon 402688 403570 . - . ID=Physo134201.3;Parent=Physo134201;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 403645 403692 . - 0 ID=Physo134201;Parent=Physo134201;rank=2 scaffold_30 . exon 403645 403692 . - . ID=Physo134201.2;Parent=Physo134201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 403755 403845 . - 0 ID=Physo134201;Parent=Physo134201;rank=1 scaffold_30 . exon 403755 403845 . - . ID=Physo134201.1;Parent=Physo134201;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 405709 406257 . + . ID=Physo156880;biotype=protein_coding;external_name=C_scaffold_30000055;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 405709 406257 . + . ID=Physo156880;Parent=Physo156880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 405709 406257 . + 0 ID=Physo156880;Parent=Physo156880;rank=1 scaffold_30 . exon 405709 406257 . + . ID=Physo156880.1;Parent=Physo156880;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 406679 409235 . + . ID=Physo156881;biotype=protein_coding;external_name=C_scaffold_30000056;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 406679 409235 . + . ID=Physo156881;Parent=Physo156881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 406679 406745 . + 0 ID=Physo156881;Parent=Physo156881;rank=1 scaffold_30 . exon 406679 406745 . + . ID=Physo156881.1;Parent=Physo156881;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 406806 406905 . + 0 ID=Physo156881;Parent=Physo156881;rank=2 scaffold_30 . exon 406806 406905 . + . ID=Physo156881.2;Parent=Physo156881;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . CDS 406977 407148 . + 0 ID=Physo156881;Parent=Physo156881;rank=3 scaffold_30 . exon 406977 407148 . + . ID=Physo156881.3;Parent=Physo156881;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 407270 407377 . + 0 ID=Physo156881;Parent=Physo156881;rank=4 scaffold_30 . exon 407270 407377 . + . ID=Physo156881.4;Parent=Physo156881;constitutive=1;rank=4 scaffold_30 . CDS 407458 407698 . + 0 ID=Physo156881;Parent=Physo156881;rank=5 scaffold_30 . exon 407458 407698 . + . ID=Physo156881.5;Parent=Physo156881;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_30 . CDS 407785 407938 . + 0 ID=Physo156881;Parent=Physo156881;rank=6 scaffold_30 . exon 407785 407938 . + . ID=Physo156881.6;Parent=Physo156881;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_30 . CDS 408031 408091 . + 0 ID=Physo156881;Parent=Physo156881;rank=7 scaffold_30 . exon 408031 408091 . + . ID=Physo156881.7;Parent=Physo156881;constitutive=1;ensembl_phase=2;rank=7 scaffold_30 . CDS 408171 408278 . + 0 ID=Physo156881;Parent=Physo156881;rank=8 scaffold_30 . exon 408171 408278 . + . ID=Physo156881.8;Parent=Physo156881;constitutive=1;rank=8 scaffold_30 . CDS 408353 408501 . + 0 ID=Physo156881;Parent=Physo156881;rank=9 scaffold_30 . exon 408353 408501 . + . ID=Physo156881.9;Parent=Physo156881;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_30 . CDS 408570 408666 . + 0 ID=Physo156881;Parent=Physo156881;rank=10 scaffold_30 . exon 408570 408666 . + . ID=Physo156881.10;Parent=Physo156881;constitutive=1;ensembl_phase=2;rank=10 scaffold_30 . CDS 408738 408796 . + 0 ID=Physo156881;Parent=Physo156881;rank=11 scaffold_30 . CDS 408875 408935 . + 0 ID=Physo156881;Parent=Physo156881;rank=12 scaffold_30 . CDS 409032 409235 . + 0 ID=Physo156881;Parent=Physo156881;rank=13 scaffold_30 . repeat_region 410548 410559 . ? . description=dust scaffold_30 . biological_region 410732 410734 0.999 + . logic_name=eponine scaffold_30 . biological_region 410763 410764 0.999 + . logic_name=eponine scaffold_30 . repeat_region 411178 411207 . ? . description=trf scaffold_30 . biological_region 411737 411740 0.999 - . logic_name=eponine scaffold_30 . repeat_region 413620 413627 . ? . description=dust scaffold_30 . repeat_region 417218 417232 . ? . description=dust scaffold_30 . repeat_region 418436 418485 . ? . description=dust scaffold_30 ensembl protein_coding_gene 409531 410698 . - . ID=Physo134203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300114;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 409531 410698 . - . ID=Physo134203;Parent=Physo134203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 409531 410481 . - 0 ID=Physo134203;Parent=Physo134203;rank=1 scaffold_30 . exon 409531 410698 . - . ID=Physo134203.1;Parent=Physo134203;constitutive=1;ensembl_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 411863 413621 . + . ID=Physo134204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300115;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 411863 413621 . + . ID=Physo134204;Parent=Physo134204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 411863 412961 . + 0 ID=Physo134204;Parent=Physo134204;rank=1 scaffold_30 . exon 411863 412961 . + . ID=Physo134204.1;Parent=Physo134204;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 413038 413104 . + 0 ID=Physo134204;Parent=Physo134204;rank=2 scaffold_30 . exon 413038 413104 . + . ID=Physo134204.2;Parent=Physo134204;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . CDS 413174 413540 . + 0 ID=Physo134204;Parent=Physo134204;rank=3 scaffold_30 . exon 413174 413621 . + . ID=Physo134204.3;Parent=Physo134204;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_30 . exon 408738 408796 . + . ID=Physo156881.11;Parent=Physo156881;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_30 . exon 408875 408935 . + . ID=Physo156881.12;Parent=Physo156881;constitutive=1;ensembl_phase=2;rank=12 scaffold_30 . exon 409032 409235 . + . ID=Physo156881.13;Parent=Physo156881;constitutive=1;rank=13 scaffold_30 ensembl protein_coding_gene 413921 414258 . - . ID=Physo156884;biotype=protein_coding;external_name=C_scaffold_30000059;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 413921 414258 . - . ID=Physo156884;Parent=Physo156884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 413921 413988 . - 0 ID=Physo156884;Parent=Physo156884;rank=3 scaffold_30 . exon 413921 413988 . - . ID=Physo156884.3;Parent=Physo156884;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 414061 414130 . - 0 ID=Physo156884;Parent=Physo156884;rank=2 scaffold_30 . exon 414061 414130 . - . ID=Physo156884.2;Parent=Physo156884;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 414196 414258 . - 0 ID=Physo156884;Parent=Physo156884;rank=1 scaffold_30 . exon 414196 414258 . - . ID=Physo156884.1;Parent=Physo156884;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 414585 416770 . + . ID=Physo156885;biotype=protein_coding;external_name=C_scaffold_30000060;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 414585 416770 . + . ID=Physo156885;Parent=Physo156885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 414585 415233 . + 0 ID=Physo156885;Parent=Physo156885;rank=1 scaffold_30 . exon 414585 415233 . + . ID=Physo156885.1;Parent=Physo156885;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 415316 415373 . + 0 ID=Physo156885;Parent=Physo156885;rank=2 scaffold_30 . exon 415316 415373 . + . ID=Physo156885.2;Parent=Physo156885;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . CDS 415446 415556 . + 0 ID=Physo156885;Parent=Physo156885;rank=3 scaffold_30 . exon 415446 415556 . + . ID=Physo156885.3;Parent=Physo156885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_30 . CDS 415725 415794 . + 0 ID=Physo156885;Parent=Physo156885;rank=4 scaffold_30 . exon 415725 415794 . + . ID=Physo156885.4;Parent=Physo156885;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 415822 415937 . + 0 ID=Physo156885;Parent=Physo156885;rank=5 scaffold_30 . exon 415822 415937 . + . ID=Physo156885.5;Parent=Physo156885;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . CDS 416004 416051 . + 0 ID=Physo156885;Parent=Physo156885;rank=6 scaffold_30 . exon 416004 416051 . + . ID=Physo156885.6;Parent=Physo156885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_30 . CDS 416127 416198 . + 0 ID=Physo156885;Parent=Physo156885;rank=7 scaffold_30 . exon 416127 416198 . + . ID=Physo156885.7;Parent=Physo156885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_30 . CDS 416292 416358 . + 0 ID=Physo156885;Parent=Physo156885;rank=8 scaffold_30 . exon 416292 416358 . + . ID=Physo156885.8;Parent=Physo156885;constitutive=1;ensembl_phase=2;rank=8 scaffold_30 . CDS 416395 416490 . + 0 ID=Physo156885;Parent=Physo156885;rank=9 scaffold_30 . exon 416395 416490 . + . ID=Physo156885.9;Parent=Physo156885;constitutive=1;rank=9 scaffold_30 . CDS 416576 416770 . + 0 ID=Physo156885;Parent=Physo156885;rank=10 scaffold_30 . exon 416576 416770 . + . ID=Physo156885.10;Parent=Physo156885;constitutive=1;rank=10 scaffold_30 ensembl protein_coding_gene 416858 418350 . - . ID=Physo156888;biotype=protein_coding;external_name=C_scaffold_30000063;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 416858 418350 . - . ID=Physo156888;Parent=Physo156888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 416858 417202 . - 0 ID=Physo156888;Parent=Physo156888;rank=4 scaffold_30 . exon 416858 417202 . - . ID=Physo156888.4;Parent=Physo156888;constitutive=1;rank=4 scaffold_30 . CDS 417390 417821 . - 0 ID=Physo156888;Parent=Physo156888;rank=3 scaffold_30 . exon 417390 417821 . - . ID=Physo156888.3;Parent=Physo156888;constitutive=1;rank=3 scaffold_30 . CDS 417899 418237 . - 0 ID=Physo156888;Parent=Physo156888;rank=2 scaffold_30 . exon 417899 418237 . - . ID=Physo156888.2;Parent=Physo156888;constitutive=1;rank=2 scaffold_30 . CDS 418315 418350 . - 0 ID=Physo156888;Parent=Physo156888;rank=1 scaffold_30 . exon 418315 418350 . - . ID=Physo156888.1;Parent=Physo156888;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 421208 423329 . - . ID=Physo134208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300119;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 421208 423329 . - . ID=Physo134208;Parent=Physo134208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 421208 421657 . - . ID=Physo134208.7;Parent=Physo134208;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_30 . CDS 421310 421657 . - 0 ID=Physo134208;Parent=Physo134208;rank=7 scaffold_30 . CDS 421722 421817 . - 0 ID=Physo134208;Parent=Physo134208;rank=6 scaffold_30 . exon 421722 421817 . - . ID=Physo134208.6;Parent=Physo134208;constitutive=1;rank=6 scaffold_30 . CDS 421901 421969 . - 0 ID=Physo134208;Parent=Physo134208;rank=5 scaffold_30 . exon 421901 421969 . - . ID=Physo134208.5;Parent=Physo134208;constitutive=1;rank=5 scaffold_30 . CDS 422060 422215 . - 0 ID=Physo134208;Parent=Physo134208;rank=4 scaffold_30 . exon 422060 422215 . - . ID=Physo134208.4;Parent=Physo134208;constitutive=1;rank=4 scaffold_30 . CDS 422288 422670 . - 0 ID=Physo134208;Parent=Physo134208;rank=3 scaffold_30 . exon 422288 422670 . - . ID=Physo134208.3;Parent=Physo134208;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 422766 422875 . - 0 ID=Physo134208;Parent=Physo134208;rank=2 scaffold_30 . exon 422766 422875 . - . ID=Physo134208.2;Parent=Physo134208;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 422959 423329 . - 0 ID=Physo134208;Parent=Physo134208;rank=1 scaffold_30 . exon 422959 423329 . - . ID=Physo134208.1;Parent=Physo134208;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 423544 424220 . + . ID=Physo134209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300120;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 423544 424220 . + . ID=Physo134209;Parent=Physo134209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 423544 424040 . + 0 ID=Physo134209;Parent=Physo134209;rank=1 scaffold_30 . exon 423544 424040 . + . ID=Physo134209.1;Parent=Physo134209;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 424160 424220 . + 0 ID=Physo134209;Parent=Physo134209;rank=2 scaffold_30 . exon 424160 424220 . + . ID=Physo134209.2;Parent=Physo134209;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 ensembl protein_coding_gene 428444 429427 . - . ID=Physo134210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300121;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 428444 429427 . - . ID=Physo134210;Parent=Physo134210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 428444 429427 . - 0 ID=Physo134210;Parent=Physo134210;rank=1 scaffold_30 . exon 428444 429427 . - . ID=Physo134210.1;Parent=Physo134210;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 419506 421080 . + . ID=Physo156891;biotype=protein_coding;external_name=C_scaffold_30000066;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 419506 421080 . + . ID=Physo156891;Parent=Physo156891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 419506 419685 . + 0 ID=Physo156891;Parent=Physo156891;rank=1 scaffold_30 . exon 419506 419685 . + . ID=Physo156891.1;Parent=Physo156891;constitutive=1;rank=1 scaffold_30 . CDS 419765 419914 . + 0 ID=Physo156891;Parent=Physo156891;rank=2 scaffold_30 . exon 419765 419914 . + . ID=Physo156891.2;Parent=Physo156891;constitutive=1;rank=2 scaffold_30 . CDS 419988 420078 . + 0 ID=Physo156891;Parent=Physo156891;rank=3 scaffold_30 . exon 419988 420078 . + . ID=Physo156891.3;Parent=Physo156891;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 420151 420236 . + 0 ID=Physo156891;Parent=Physo156891;rank=4 scaffold_30 . exon 420151 420236 . + . ID=Physo156891.4;Parent=Physo156891;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 420341 420410 . + 0 ID=Physo156891;Parent=Physo156891;rank=5 scaffold_30 . exon 420341 420410 . + . ID=Physo156891.5;Parent=Physo156891;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_30 . CDS 420486 420592 . + 0 ID=Physo156891;Parent=Physo156891;rank=6 scaffold_30 . exon 420486 420592 . + . ID=Physo156891.6;Parent=Physo156891;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 420681 420737 . + 0 ID=Physo156891;Parent=Physo156891;rank=7 scaffold_30 . exon 420681 420737 . + . ID=Physo156891.7;Parent=Physo156891;constitutive=1;rank=7 scaffold_30 . CDS 420818 420919 . + 0 ID=Physo156891;Parent=Physo156891;rank=8 scaffold_30 . exon 420818 420919 . + . ID=Physo156891.8;Parent=Physo156891;constitutive=1;rank=8 scaffold_30 . CDS 420994 421080 . + 0 ID=Physo156891;Parent=Physo156891;rank=9 scaffold_30 . exon 420994 421080 . + . ID=Physo156891.9;Parent=Physo156891;constitutive=1;rank=9 scaffold_30 . biological_region 428744 428745 0.999 - . logic_name=eponine scaffold_30 . biological_region 428796 428802 0.999 + . logic_name=eponine scaffold_30 . biological_region 428822 428825 0.999 - . logic_name=eponine scaffold_30 . biological_region 428834 428839 0.999 + . logic_name=eponine scaffold_30 . biological_region 429376 429379 0.999 - . logic_name=eponine scaffold_30 . biological_region 429593 429595 0.999 - . logic_name=eponine scaffold_30 . repeat_region 431413 431437 . ? . description=trf scaffold_30 . repeat_region 433478 433497 . ? . description=trf scaffold_30 . repeat_region 436700 436707 . ? . description=dust scaffold_30 . repeat_region 437191 445221 . ? . description=dust scaffold_30 ensembl protein_coding_gene 430114 433634 . - . ID=Physo134211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300122;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 430114 433634 . - . ID=Physo134211;Parent=Physo134211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 430114 430274 . - 0 ID=Physo134211;Parent=Physo134211;rank=3 scaffold_30 . exon 430114 430274 . - . ID=Physo134211.3;Parent=Physo134211;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 430366 430620 . - 0 ID=Physo134211;Parent=Physo134211;rank=2 scaffold_30 . exon 430366 430620 . - . ID=Physo134211.2;Parent=Physo134211;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 430718 433634 . - 0 ID=Physo134211;Parent=Physo134211;rank=1 scaffold_30 . exon 430718 433634 . - . ID=Physo134211.1;Parent=Physo134211;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 433873 435443 . + . ID=Physo134212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300123;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 433873 435443 . + . ID=Physo134212;Parent=Physo134212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 433873 433944 . + 0 ID=Physo134212;Parent=Physo134212;rank=1 scaffold_30 . exon 433873 433944 . + . ID=Physo134212.1;Parent=Physo134212;constitutive=1;rank=1 scaffold_30 . CDS 434021 434136 . + 0 ID=Physo134212;Parent=Physo134212;rank=2 scaffold_30 . exon 434021 434136 . + . ID=Physo134212.2;Parent=Physo134212;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 434211 434314 . + 0 ID=Physo134212;Parent=Physo134212;rank=3 scaffold_30 . exon 434211 434314 . + . ID=Physo134212.3;Parent=Physo134212;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 434395 434461 . + 0 ID=Physo134212;Parent=Physo134212;rank=4 scaffold_30 . exon 434395 434461 . + . ID=Physo134212.4;Parent=Physo134212;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_30 . CDS 434530 434629 . + 0 ID=Physo134212;Parent=Physo134212;rank=5 scaffold_30 . exon 434530 434629 . + . ID=Physo134212.5;Parent=Physo134212;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 434700 435108 . + 0 ID=Physo134212;Parent=Physo134212;rank=6 scaffold_30 . exon 434700 435108 . + . ID=Physo134212.6;Parent=Physo134212;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_30 . CDS 435427 435443 . + 0 ID=Physo134212;Parent=Physo134212;rank=7 scaffold_30 . exon 435427 435443 . + . ID=Physo134212.7;Parent=Physo134212;constitutive=1;ensembl_phase=1;rank=7 scaffold_30 ensembl protein_coding_gene 445551 447041 . + . ID=Physo134213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300124;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 445551 447041 . + . ID=Physo134213;Parent=Physo134213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 445551 447041 . + 0 ID=Physo134213;Parent=Physo134213;rank=1 scaffold_30 . exon 445551 447041 . + . ID=Physo134213.1;Parent=Physo134213;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 447760 448815 . + . ID=Physo134214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300125;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 447760 448815 . + . ID=Physo134214;Parent=Physo134214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 447760 447786 . + 0 ID=Physo134214;Parent=Physo134214;rank=1 scaffold_30 . exon 447760 447786 . + . ID=Physo134214.1;Parent=Physo134214;constitutive=1;rank=1 scaffold_30 . CDS 447839 448271 . + 0 ID=Physo134214;Parent=Physo134214;rank=2 scaffold_30 . exon 447839 448271 . + . ID=Physo134214.2;Parent=Physo134214;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 448455 448606 . + 0 ID=Physo134214;Parent=Physo134214;rank=3 scaffold_30 . exon 448455 448606 . + . ID=Physo134214.3;Parent=Physo134214;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 448633 448815 . + 0 ID=Physo134214;Parent=Physo134214;rank=4 scaffold_30 . repeat_region 448880 448890 . ? . description=dust scaffold_30 . biological_region 451190 451191 0.999 - . logic_name=eponine scaffold_30 . biological_region 453299 453302 0.999 + . logic_name=eponine scaffold_30 . repeat_region 453742 453774 . ? . description=trf scaffold_30 . repeat_region 454384 454449 . ? . description=trf scaffold_30 . biological_region 454471 454471 0.999 - . logic_name=eponine scaffold_30 . biological_region 454500 454503 0.999 - . logic_name=eponine scaffold_30 . biological_region 456760 456766 0.999 + . logic_name=eponine scaffold_30 . biological_region 457105 457106 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 457540 460398 . + . ID=Physo115928;biotype=protein_coding;external_name=estExt_Genewise1.C_300046;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 457540 460398 . + . ID=Physo115928;Parent=Physo115928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 457540 460398 . + . ID=Physo115928.1;Parent=Physo115928;constitutive=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 457666 460398 . + 0 ID=Physo115928;Parent=Physo115928;rank=1 scaffold_30 . exon 448633 448815 . + . ID=Physo134214.4;Parent=Physo134214;constitutive=1;rank=4 scaffold_30 ensembl protein_coding_gene 450119 451294 . + . ID=Physo134215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300126;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 450119 451294 . + . ID=Physo134215;Parent=Physo134215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 450119 451294 . + 0 ID=Physo134215;Parent=Physo134215;rank=1 scaffold_30 . exon 450119 451294 . + . ID=Physo134215.1;Parent=Physo134215;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 451825 452995 . + . ID=Physo134216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300127;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 451825 452995 . + . ID=Physo134216;Parent=Physo134216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 451825 452182 . + 0 ID=Physo134216;Parent=Physo134216;rank=1 scaffold_30 . exon 451825 452182 . + . ID=Physo134216.1;Parent=Physo134216;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 452258 452334 . + 0 ID=Physo134216;Parent=Physo134216;rank=2 scaffold_30 . exon 452258 452334 . + . ID=Physo134216.2;Parent=Physo134216;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 452420 452995 . + 0 ID=Physo134216;Parent=Physo134216;rank=3 scaffold_30 . exon 452420 452995 . + . ID=Physo134216.3;Parent=Physo134216;constitutive=1;rank=3 scaffold_30 ensembl protein_coding_gene 453296 454499 . + . ID=Physo134217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300128;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 453296 454499 . + . ID=Physo134217;Parent=Physo134217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 453296 453802 . + 0 ID=Physo134217;Parent=Physo134217;rank=1 scaffold_30 . exon 453296 453802 . + . ID=Physo134217.1;Parent=Physo134217;constitutive=1;rank=1 scaffold_30 . CDS 453895 454031 . + 0 ID=Physo134217;Parent=Physo134217;rank=2 scaffold_30 . exon 453895 454031 . + . ID=Physo134217.2;Parent=Physo134217;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 454130 454499 . + 0 ID=Physo134217;Parent=Physo134217;rank=3 scaffold_30 . exon 454130 454499 . + . ID=Physo134217.3;Parent=Physo134217;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 ensembl protein_coding_gene 454892 455597 . + . ID=Physo134218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300129;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 454892 455597 . + . ID=Physo134218;Parent=Physo134218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 454892 455597 . + . ID=Physo134218.1;Parent=Physo134218;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 454905 455477 . + 0 ID=Physo134218;Parent=Physo134218;rank=1 scaffold_30 ensembl protein_coding_gene 460747 462639 . + . ID=Physo134220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300131;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 460747 462639 . + . ID=Physo134220;Parent=Physo134220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 460747 462127 . + 0 ID=Physo134220;Parent=Physo134220;rank=1 scaffold_30 . exon 460747 462127 . + . ID=Physo134220.1;Parent=Physo134220;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 462335 462639 . + 0 ID=Physo134220;Parent=Physo134220;rank=2 scaffold_30 . exon 462335 462639 . + . ID=Physo134220.2;Parent=Physo134220;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 ensembl protein_coding_gene 462837 463175 . - . ID=Physo134221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300132;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 462837 463175 . - . ID=Physo134221;Parent=Physo134221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 462837 463175 . - 0 ID=Physo134221;Parent=Physo134221;rank=1 scaffold_30 . exon 462837 463175 . - . ID=Physo134221.1;Parent=Physo134221;constitutive=1;rank=1 scaffold_30 . repeat_region 465665 471927 . ? . description=dust scaffold_30 . biological_region 472114 472115 0.999 + . logic_name=eponine scaffold_30 . repeat_region 473522 473571 . ? . description=dust scaffold_30 . repeat_region 473606 473614 . ? . description=dust scaffold_30 . biological_region 474298 474302 0.999 + . logic_name=eponine scaffold_30 . biological_region 474959 474959 0.999 + . logic_name=eponine scaffold_30 . biological_region 474978 474980 0.999 + . logic_name=eponine scaffold_30 . biological_region 475070 475075 0.999 - . logic_name=eponine scaffold_30 . biological_region 475512 475513 0.999 - . logic_name=eponine scaffold_30 . biological_region 475588 475593 0.999 - . logic_name=eponine scaffold_30 . biological_region 475614 475623 0.999 - . logic_name=eponine scaffold_30 . repeat_region 476225 476232 . ? . description=dust scaffold_30 . biological_region 477536 477538 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 471932 473306 . - . ID=Physo108766;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300017;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 471932 473306 . - . ID=Physo108766;Parent=Physo108766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 471932 473117 . - . ID=Physo108766.3;Parent=Physo108766;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_30 . CDS 472083 473090 . - 0 ID=Physo108766;Parent=Physo108766;rank=1 scaffold_30 . exon 473159 473239 . - . ID=Physo108766.2;Parent=Physo108766;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_30 . exon 473281 473306 . - . ID=Physo108766.1;Parent=Physo108766;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 473743 475137 . - . ID=Physo134223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300134;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 473743 475137 . - . ID=Physo134223;Parent=Physo134223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 473743 475137 . - . ID=Physo134223.1;Parent=Physo134223;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 473889 475088 . - 0 ID=Physo134223;Parent=Physo134223;rank=1 scaffold_30 ensembl protein_coding_gene 477801 478981 . + . ID=Physo134225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300136;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 477801 478981 . + . ID=Physo134225;Parent=Physo134225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 477801 477807 . + . ID=Physo134225.1;Parent=Physo134225;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . exon 477989 478076 . + . ID=Physo134225.2;Parent=Physo134225;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_30 . CDS 478043 478076 . + 0 ID=Physo134225;Parent=Physo134225;rank=1 scaffold_30 . CDS 478209 478302 . + 0 ID=Physo134225;Parent=Physo134225;rank=2 scaffold_30 . exon 478209 478302 . + . ID=Physo134225.3;Parent=Physo134225;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 478382 478523 . + 0 ID=Physo134225;Parent=Physo134225;rank=3 scaffold_30 . exon 478382 478523 . + . ID=Physo134225.4;Parent=Physo134225;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 478624 478745 . + 0 ID=Physo134225;Parent=Physo134225;rank=4 scaffold_30 . CDS 478819 478981 . + 0 ID=Physo134225;Parent=Physo134225;rank=5 scaffold_30 . repeat_region 480963 480982 . ? . description=trf scaffold_30 . repeat_region 484229 484292 . ? . description=trf scaffold_30 . repeat_region 484907 484952 . ? . description=trf scaffold_30 ensembl protein_coding_gene 486237 486839 . - . ID=Physo108767;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300018;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 486237 486839 . - . ID=Physo108767;Parent=Physo108767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 486237 486599 . - 0 ID=Physo108767;Parent=Physo108767;rank=2 scaffold_30 . exon 486237 486599 . - . ID=Physo108767.2;Parent=Physo108767;constitutive=1;rank=2 scaffold_30 . CDS 486693 486839 . - 0 ID=Physo108767;Parent=Physo108767;rank=1 scaffold_30 . exon 486693 486839 . - . ID=Physo108767.1;Parent=Physo108767;constitutive=1;rank=1 scaffold_30 . exon 478624 478745 . + . ID=Physo134225.5;Parent=Physo134225;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . exon 478819 478981 . + . ID=Physo134225.6;Parent=Physo134225;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 ensembl protein_coding_gene 479325 480864 . - . ID=Physo134226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300137;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 479325 480864 . - . ID=Physo134226;Parent=Physo134226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 479325 479390 . - 0 ID=Physo134226;Parent=Physo134226;rank=10 scaffold_30 . exon 479325 479390 . - . ID=Physo134226.10;Parent=Physo134226;constitutive=1;rank=10 scaffold_30 . CDS 479463 479560 . - 0 ID=Physo134226;Parent=Physo134226;rank=9 scaffold_30 . exon 479463 479560 . - . ID=Physo134226.9;Parent=Physo134226;constitutive=1;ensembl_phase=1;rank=9 scaffold_30 . CDS 479633 479737 . - 0 ID=Physo134226;Parent=Physo134226;rank=8 scaffold_30 . exon 479633 479737 . - . ID=Physo134226.8;Parent=Physo134226;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_30 . CDS 479797 479878 . - 0 ID=Physo134226;Parent=Physo134226;rank=7 scaffold_30 . exon 479797 479878 . - . ID=Physo134226.7;Parent=Physo134226;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_30 . CDS 479955 479999 . - 0 ID=Physo134226;Parent=Physo134226;rank=6 scaffold_30 . exon 479955 479999 . - . ID=Physo134226.6;Parent=Physo134226;constitutive=1;rank=6 scaffold_30 . CDS 480070 480192 . - 0 ID=Physo134226;Parent=Physo134226;rank=5 scaffold_30 . exon 480070 480192 . - . ID=Physo134226.5;Parent=Physo134226;constitutive=1;rank=5 scaffold_30 . CDS 480261 480368 . - 0 ID=Physo134226;Parent=Physo134226;rank=4 scaffold_30 . exon 480261 480368 . - . ID=Physo134226.4;Parent=Physo134226;constitutive=1;rank=4 scaffold_30 . CDS 480450 480546 . - 0 ID=Physo134226;Parent=Physo134226;rank=3 scaffold_30 . exon 480450 480546 . - . ID=Physo134226.3;Parent=Physo134226;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 480627 480703 . - 0 ID=Physo134226;Parent=Physo134226;rank=2 scaffold_30 . exon 480627 480703 . - . ID=Physo134226.2;Parent=Physo134226;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 480799 480864 . - 0 ID=Physo134226;Parent=Physo134226;rank=1 scaffold_30 . exon 480799 480864 . - . ID=Physo134226.1;Parent=Physo134226;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 481002 483048 . + . ID=Physo134227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300138;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 481002 483048 . + . ID=Physo134227;Parent=Physo134227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 481002 481146 . + . ID=Physo134227.1;Parent=Physo134227;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_30 . CDS 481037 481146 . + 0 ID=Physo134227;Parent=Physo134227;rank=1 scaffold_30 . CDS 481227 481254 . + 0 ID=Physo134227;Parent=Physo134227;rank=2 scaffold_30 . exon 481227 481254 . + . ID=Physo134227.2;Parent=Physo134227;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 481337 481448 . + 0 ID=Physo134227;Parent=Physo134227;rank=3 scaffold_30 . exon 481337 481448 . + . ID=Physo134227.3;Parent=Physo134227;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 481518 481624 . + 0 ID=Physo134227;Parent=Physo134227;rank=4 scaffold_30 . exon 481518 481624 . + . ID=Physo134227.4;Parent=Physo134227;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 481705 481869 . + 0 ID=Physo134227;Parent=Physo134227;rank=5 scaffold_30 . exon 481705 481869 . + . ID=Physo134227.5;Parent=Physo134227;constitutive=1;rank=5 scaffold_30 . CDS 481955 482226 . + 0 ID=Physo134227;Parent=Physo134227;rank=6 scaffold_30 . exon 481955 482226 . + . ID=Physo134227.6;Parent=Physo134227;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_30 . CDS 482302 482656 . + 0 ID=Physo134227;Parent=Physo134227;rank=7 scaffold_30 . exon 482302 482656 . + . ID=Physo134227.7;Parent=Physo134227;constitutive=1;ensembl_phase=2;rank=7 scaffold_30 . CDS 482740 482934 . + 0 ID=Physo134227;Parent=Physo134227;rank=8 scaffold_30 . exon 482740 482934 . + . ID=Physo134227.8;Parent=Physo134227;constitutive=1;rank=8 scaffold_30 . CDS 483001 483048 . + 0 ID=Physo134227;Parent=Physo134227;rank=9 scaffold_30 . exon 483001 483048 . + . ID=Physo134227.9;Parent=Physo134227;constitutive=1;rank=9 scaffold_30 ensembl protein_coding_gene 483341 485230 . + . ID=Physo134228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300139;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 483341 485230 . + . ID=Physo134228;Parent=Physo134228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 483341 483547 . + 0 ID=Physo134228;Parent=Physo134228;rank=1 scaffold_30 . exon 483341 483547 . + . ID=Physo134228.1;Parent=Physo134228;constitutive=1;rank=1 scaffold_30 . CDS 483614 483694 . + 0 ID=Physo134228;Parent=Physo134228;rank=2 scaffold_30 . exon 483614 483694 . + . ID=Physo134228.2;Parent=Physo134228;constitutive=1;rank=2 scaffold_30 . CDS 483794 483896 . + 0 ID=Physo134228;Parent=Physo134228;rank=3 scaffold_30 . exon 483794 483896 . + . ID=Physo134228.3;Parent=Physo134228;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 483972 484076 . + 0 ID=Physo134228;Parent=Physo134228;rank=4 scaffold_30 . exon 483972 484076 . + . ID=Physo134228.4;Parent=Physo134228;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 484488 484624 . + 0 ID=Physo134228;Parent=Physo134228;rank=5 scaffold_30 . exon 484488 484624 . + . ID=Physo134228.5;Parent=Physo134228;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 484703 485230 . + 0 ID=Physo134228;Parent=Physo134228;rank=6 scaffold_30 . exon 484703 485230 . + . ID=Physo134228.6;Parent=Physo134228;constitutive=1;rank=6 scaffold_30 ensembl protein_coding_gene 485338 485930 . - . ID=Physo134229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300140;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 485338 485930 . - . ID=Physo134229;Parent=Physo134229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 485338 485930 . - . ID=Physo134229.1;Parent=Physo134229;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 485498 485701 . - 0 ID=Physo134229;Parent=Physo134229;rank=1 scaffold_30 . biological_region 491489 491492 0.999 + . logic_name=eponine scaffold_30 . repeat_region 493728 493743 . ? . description=dust scaffold_30 ensembl protein_coding_gene 496452 498855 . - . ID=Physo108768;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300019;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 496452 498855 . - . ID=Physo108768;Parent=Physo108768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 496452 496952 . - . ID=Physo108768.6;Parent=Physo108768;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_30 . CDS 496626 496952 . - 0 ID=Physo108768;Parent=Physo108768;rank=6 scaffold_30 . CDS 497031 497156 . - 0 ID=Physo108768;Parent=Physo108768;rank=5 scaffold_30 . exon 497031 497156 . - . ID=Physo108768.5;Parent=Physo108768;constitutive=1;rank=5 scaffold_30 . CDS 497220 497564 . - 0 ID=Physo108768;Parent=Physo108768;rank=4 scaffold_30 . exon 497220 497564 . - . ID=Physo108768.4;Parent=Physo108768;constitutive=1;rank=4 scaffold_30 . CDS 497633 497838 . - 0 ID=Physo108768;Parent=Physo108768;rank=3 scaffold_30 . exon 497633 497838 . - . ID=Physo108768.3;Parent=Physo108768;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 497917 498034 . - 0 ID=Physo108768;Parent=Physo108768;rank=2 scaffold_30 . exon 497917 498034 . - . ID=Physo108768.2;Parent=Physo108768;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 498124 498855 . - 0 ID=Physo108768;Parent=Physo108768;rank=1 scaffold_30 . exon 498124 498855 . - . ID=Physo108768.1;Parent=Physo108768;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 491064 492067 . - . ID=Physo134231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300142;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 491064 492067 . - . ID=Physo134231;Parent=Physo134231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 491064 491263 . - . ID=Physo134231.5;Parent=Physo134231;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_30 . CDS 491152 491263 . - 0 ID=Physo134231;Parent=Physo134231;rank=5 scaffold_30 . CDS 491355 491415 . - 0 ID=Physo134231;Parent=Physo134231;rank=4 scaffold_30 . exon 491355 491415 . - . ID=Physo134231.4;Parent=Physo134231;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_30 . CDS 491492 491646 . - 0 ID=Physo134231;Parent=Physo134231;rank=3 scaffold_30 . exon 491492 491646 . - . ID=Physo134231.3;Parent=Physo134231;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 491724 491844 . - 0 ID=Physo134231;Parent=Physo134231;rank=2 scaffold_30 . exon 491724 491844 . - . ID=Physo134231.2;Parent=Physo134231;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_30 . CDS 491929 492067 . - 0 ID=Physo134231;Parent=Physo134231;rank=1 scaffold_30 . exon 491929 492067 . - . ID=Physo134231.1;Parent=Physo134231;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 493932 496242 . - . ID=Physo134232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300143;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 493932 496242 . - . ID=Physo134232;Parent=Physo134232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 493932 494078 . - 0 ID=Physo134232;Parent=Physo134232;rank=4 scaffold_30 . exon 493932 494078 . - . ID=Physo134232.4;Parent=Physo134232;constitutive=1;rank=4 scaffold_30 . CDS 494360 494410 . - 0 ID=Physo134232;Parent=Physo134232;rank=3 scaffold_30 . exon 494360 494410 . - . ID=Physo134232.3;Parent=Physo134232;constitutive=1;rank=3 scaffold_30 . CDS 494511 494714 . - 0 ID=Physo134232;Parent=Physo134232;rank=2 scaffold_30 . exon 494511 494714 . - . ID=Physo134232.2;Parent=Physo134232;constitutive=1;rank=2 scaffold_30 . CDS 494791 496242 . - 0 ID=Physo134232;Parent=Physo134232;rank=1 scaffold_30 . exon 494791 496242 . - . ID=Physo134232.1;Parent=Physo134232;constitutive=1;rank=1 scaffold_30 . repeat_region 499084 499138 . ? . description=trf scaffold_30 . repeat_region 499086 499137 . ? . description=trf scaffold_30 . repeat_region 500815 500847 . ? . description=trf scaffold_30 . repeat_region 508064 508096 . ? . description=trf scaffold_30 ensembl protein_coding_gene 500774 506586 . + . ID=Physo134234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300145;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 500774 506586 . + . ID=Physo134234;Parent=Physo134234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 500774 506459 . + 0 ID=Physo134234;Parent=Physo134234;rank=1 scaffold_30 . exon 500774 506459 . + . ID=Physo134234.1;Parent=Physo134234;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 506534 506586 . + 0 ID=Physo134234;Parent=Physo134234;rank=2 scaffold_30 . exon 506534 506586 . + . ID=Physo134234.2;Parent=Physo134234;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 ensembl protein_coding_gene 508023 515993 . + . ID=Physo134235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300146;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 508023 515993 . + . ID=Physo134235;Parent=Physo134235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 508023 515993 . + 0 ID=Physo134235;Parent=Physo134235;rank=1 scaffold_30 . exon 508023 515993 . + . ID=Physo134235.1;Parent=Physo134235;constitutive=1;rank=1 scaffold_30 . biological_region 508853 508855 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 516254 520570 . - . ID=Physo134236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300147;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 516254 520570 . - . ID=Physo134236;Parent=Physo134236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 516254 516626 . - 0 ID=Physo134236;Parent=Physo134236;rank=9 scaffold_30 . exon 516254 516626 . - . ID=Physo134236.9;Parent=Physo134236;constitutive=1;ensembl_phase=2;rank=9 scaffold_30 . CDS 516853 516881 . - 0 ID=Physo134236;Parent=Physo134236;rank=8 scaffold_30 . exon 516853 516881 . - . ID=Physo134236.8;Parent=Physo134236;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_30 . CDS 516966 517076 . - 0 ID=Physo134236;Parent=Physo134236;rank=7 scaffold_30 . exon 516966 517076 . - . ID=Physo134236.7;Parent=Physo134236;constitutive=1;rank=7 scaffold_30 . CDS 517148 517942 . - 0 ID=Physo134236;Parent=Physo134236;rank=6 scaffold_30 . exon 517148 517942 . - . ID=Physo134236.6;Parent=Physo134236;constitutive=1;rank=6 scaffold_30 . CDS 518010 518134 . - 0 ID=Physo134236;Parent=Physo134236;rank=5 scaffold_30 . exon 518010 518134 . - . ID=Physo134236.5;Parent=Physo134236;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 518209 518269 . - 0 ID=Physo134236;Parent=Physo134236;rank=4 scaffold_30 . exon 518209 518269 . - . ID=Physo134236.4;Parent=Physo134236;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 518343 519953 . - 0 ID=Physo134236;Parent=Physo134236;rank=3 scaffold_30 . CDS 520048 520078 . - 0 ID=Physo134236;Parent=Physo134236;rank=2 scaffold_30 . CDS 520443 520570 . - 0 ID=Physo134236;Parent=Physo134236;rank=1 scaffold_30 . repeat_region 522195 522243 . ? . description=trf scaffold_30 . repeat_region 522721 522741 . ? . description=trf scaffold_30 . repeat_region 523171 523219 . ? . description=trf scaffold_30 ensembl protein_coding_gene 527872 528852 . + . ID=Physo108769;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300020;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 527872 528852 . + . ID=Physo108769;Parent=Physo108769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 527872 528852 . + 0 ID=Physo108769;Parent=Physo108769;rank=1 scaffold_30 . exon 527872 528852 . + . ID=Physo108769.1;Parent=Physo108769;constitutive=1;rank=1 scaffold_30 . exon 518343 519953 . - . ID=Physo134236.3;Parent=Physo134236;constitutive=1;rank=3 scaffold_30 . exon 520048 520078 . - . ID=Physo134236.2;Parent=Physo134236;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . exon 520443 520570 . - . ID=Physo134236.1;Parent=Physo134236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 521865 522833 . + . ID=Physo134237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300148;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 521865 522833 . + . ID=Physo134237;Parent=Physo134237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 521865 521914 . + 0 ID=Physo134237;Parent=Physo134237;rank=1 scaffold_30 . exon 521865 521914 . + . ID=Physo134237.1;Parent=Physo134237;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 521978 522833 . + 0 ID=Physo134237;Parent=Physo134237;rank=2 scaffold_30 . exon 521978 522833 . + . ID=Physo134237.2;Parent=Physo134237;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 ensembl protein_coding_gene 524990 526472 . + . ID=Physo134238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300149;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 524990 526472 . + . ID=Physo134238;Parent=Physo134238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 524990 525013 . + 0 ID=Physo134238;Parent=Physo134238;rank=1 scaffold_30 . exon 524990 525013 . + . ID=Physo134238.1;Parent=Physo134238;constitutive=1;rank=1 scaffold_30 . CDS 525251 525986 . + 0 ID=Physo134238;Parent=Physo134238;rank=2 scaffold_30 . exon 525251 525986 . + . ID=Physo134238.2;Parent=Physo134238;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 526021 526472 . + 0 ID=Physo134238;Parent=Physo134238;rank=3 scaffold_30 . exon 526021 526472 . + . ID=Physo134238.3;Parent=Physo134238;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . biological_region 532713 532716 0.999 + . logic_name=eponine scaffold_30 . biological_region 532781 532786 0.999 + . logic_name=eponine scaffold_30 . biological_region 532809 532811 0.999 - . logic_name=eponine scaffold_30 . repeat_region 533217 535391 . + . description=GypsyPi-1c_I-int scaffold_30 . biological_region 535887 535889 0.999 - . logic_name=eponine scaffold_30 . biological_region 535892 535892 0.999 + . logic_name=eponine scaffold_30 . repeat_region 536542 548681 . ? . description=dust scaffold_30 ensembl protein_coding_gene 530960 536207 . + . ID=Physo134240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300151;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 530960 536207 . + . ID=Physo134240;Parent=Physo134240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 530960 531461 . + 0 ID=Physo134240;Parent=Physo134240;rank=1 scaffold_30 . exon 530960 531461 . + . ID=Physo134240.1;Parent=Physo134240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 532052 533709 . + 0 ID=Physo134240;Parent=Physo134240;rank=2 scaffold_30 . exon 532052 533709 . + . ID=Physo134240.2;Parent=Physo134240;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 533745 535133 . + 0 ID=Physo134240;Parent=Physo134240;rank=3 scaffold_30 . exon 533745 535133 . + . ID=Physo134240.3;Parent=Physo134240;constitutive=1;rank=3 scaffold_30 . CDS 535169 535656 . + 0 ID=Physo134240;Parent=Physo134240;rank=4 scaffold_30 . exon 535169 535656 . + . ID=Physo134240.4;Parent=Physo134240;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 535946 536207 . + 0 ID=Physo134240;Parent=Physo134240;rank=5 scaffold_30 . exon 535946 536207 . + . ID=Physo134240.5;Parent=Physo134240;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . repeat_region 536542 548681 . ? . description=dust scaffold_30 . repeat_region 548682 549420 . ? . description=trf scaffold_30 . repeat_region 551336 551390 . ? . description=trf scaffold_30 . biological_region 552076 552079 0.999 - . logic_name=eponine scaffold_30 . biological_region 552966 552971 0.999 - . logic_name=eponine scaffold_30 . biological_region 554584 554586 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 551130 551891 . - . ID=Physo134242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300153;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 551130 551891 . - . ID=Physo134242;Parent=Physo134242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 551130 551891 . - 0 ID=Physo134242;Parent=Physo134242;rank=1 scaffold_30 . exon 551130 551891 . - . ID=Physo134242.1;Parent=Physo134242;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 553530 554453 . + . ID=Physo134244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300155;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 553530 554453 . + . ID=Physo134244;Parent=Physo134244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 553530 553772 . + 0 ID=Physo134244;Parent=Physo134244;rank=1 scaffold_30 . exon 553530 553772 . + . ID=Physo134244.1;Parent=Physo134244;constitutive=1;rank=1 scaffold_30 . CDS 553851 554453 . + 0 ID=Physo134244;Parent=Physo134244;rank=2 scaffold_30 . exon 553851 554453 . + . ID=Physo134244.2;Parent=Physo134244;constitutive=1;rank=2 scaffold_30 ensembl protein_coding_gene 554615 556092 . + . ID=Physo134245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300156;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 554615 556092 . + . ID=Physo134245;Parent=Physo134245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 554615 555367 . + 0 ID=Physo134245;Parent=Physo134245;rank=1 scaffold_30 . exon 554615 555367 . + . ID=Physo134245.1;Parent=Physo134245;constitutive=1;rank=1 scaffold_30 . CDS 555451 556092 . + 0 ID=Physo134245;Parent=Physo134245;rank=2 scaffold_30 . exon 555451 556092 . + . ID=Physo134245.2;Parent=Physo134245;constitutive=1;rank=2 scaffold_30 ensembl protein_coding_gene 549535 550788 . + . ID=Physo156895;biotype=protein_coding;external_name=C_scaffold_30000070;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 549535 550788 . + . ID=Physo156895;Parent=Physo156895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 549535 549783 . + 0 ID=Physo156895;Parent=Physo156895;rank=1 scaffold_30 . exon 549535 549783 . + . ID=Physo156895.1;Parent=Physo156895;constitutive=1;rank=1 scaffold_30 . CDS 549868 549948 . + 0 ID=Physo156895;Parent=Physo156895;rank=2 scaffold_30 . exon 549868 549948 . + . ID=Physo156895.2;Parent=Physo156895;constitutive=1;rank=2 scaffold_30 . CDS 550049 550128 . + 0 ID=Physo156895;Parent=Physo156895;rank=3 scaffold_30 . exon 550049 550128 . + . ID=Physo156895.3;Parent=Physo156895;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 550196 550372 . + 0 ID=Physo156895;Parent=Physo156895;rank=4 scaffold_30 . exon 550196 550372 . + . ID=Physo156895.4;Parent=Physo156895;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_30 . CDS 550455 550560 . + 0 ID=Physo156895;Parent=Physo156895;rank=5 scaffold_30 . exon 550455 550560 . + . ID=Physo156895.5;Parent=Physo156895;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 550666 550788 . + 0 ID=Physo156895;Parent=Physo156895;rank=6 scaffold_30 . exon 550666 550788 . + . ID=Physo156895.6;Parent=Physo156895;constitutive=1;rank=6 scaffold_30 ensembl protein_coding_gene 552035 552567 . + . ID=Physo156896;biotype=protein_coding;external_name=C_scaffold_30000071;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 552035 552567 . + . ID=Physo156896;Parent=Physo156896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 552035 552127 . + 0 ID=Physo156896;Parent=Physo156896;rank=1 scaffold_30 . exon 552035 552127 . + . ID=Physo156896.1;Parent=Physo156896;constitutive=1;rank=1 scaffold_30 . CDS 552232 552567 . + 0 ID=Physo156896;Parent=Physo156896;rank=2 scaffold_30 . exon 552232 552567 . + . ID=Physo156896.2;Parent=Physo156896;constitutive=1;rank=2 scaffold_30 ensembl protein_coding_gene 560192 563255 . + . ID=Physo108770;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300021;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 560192 563255 . + . ID=Physo108770;Parent=Physo108770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 560192 560506 . + 0 ID=Physo108770;Parent=Physo108770;rank=1 scaffold_30 . exon 560192 560506 . + . ID=Physo108770.1;Parent=Physo108770;constitutive=1;rank=1 scaffold_30 . CDS 560630 561091 . + 0 ID=Physo108770;Parent=Physo108770;rank=2 scaffold_30 . exon 560630 561091 . + . ID=Physo108770.2;Parent=Physo108770;constitutive=1;rank=2 scaffold_30 . CDS 561172 561903 . + 0 ID=Physo108770;Parent=Physo108770;rank=3 scaffold_30 . exon 561172 561903 . + . ID=Physo108770.3;Parent=Physo108770;constitutive=1;rank=3 scaffold_30 . CDS 561975 562122 . + 0 ID=Physo108770;Parent=Physo108770;rank=4 scaffold_30 . exon 561975 562122 . + . ID=Physo108770.4;Parent=Physo108770;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 562178 562586 . + 0 ID=Physo108770;Parent=Physo108770;rank=5 scaffold_30 . exon 562178 562586 . + . ID=Physo108770.5;Parent=Physo108770;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_30 . CDS 562661 562869 . + 0 ID=Physo108770;Parent=Physo108770;rank=6 scaffold_30 . exon 562661 562869 . + . ID=Physo108770.6;Parent=Physo108770;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 562929 563108 . + 0 ID=Physo108770;Parent=Physo108770;rank=7 scaffold_30 . exon 562929 563108 . + . ID=Physo108770.7;Parent=Physo108770;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_30 . CDS 563236 563255 . + 0 ID=Physo108770;Parent=Physo108770;rank=8 scaffold_30 . exon 563236 563255 . + . ID=Physo108770.8;Parent=Physo108770;constitutive=1;ensembl_phase=1;rank=8 scaffold_30 ensembl protein_coding_gene 563372 565240 . - . ID=Physo134247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300158;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 563372 565240 . - . ID=Physo134247;Parent=Physo134247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 563372 564776 . - 0 ID=Physo134247;Parent=Physo134247;rank=2 scaffold_30 . exon 563372 564776 . - . ID=Physo134247.2;Parent=Physo134247;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 564840 565240 . - 0 ID=Physo134247;Parent=Physo134247;rank=1 scaffold_30 . exon 564840 565240 . - . ID=Physo134247.1;Parent=Physo134247;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 ensembl protein_coding_gene 565411 567327 . - . ID=Physo134248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300159;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 565411 567327 . - . ID=Physo134248;Parent=Physo134248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 565411 567327 . - 0 ID=Physo134248;Parent=Physo134248;rank=1 scaffold_30 . exon 565411 567327 . - . ID=Physo134248.1;Parent=Physo134248;constitutive=1;rank=1 scaffold_30 . biological_region 568227 568229 0.999 + . logic_name=eponine scaffold_30 . biological_region 568478 568478 0.999 + . logic_name=eponine scaffold_30 . biological_region 568637 568637 0.999 - . logic_name=eponine scaffold_30 . biological_region 568660 568664 0.999 + . logic_name=eponine scaffold_30 . repeat_region 568670 568726 . ? . description=dust scaffold_30 . biological_region 568675 568677 0.999 - . logic_name=eponine scaffold_30 . biological_region 568777 568781 0.999 - . logic_name=eponine scaffold_30 . biological_region 573132 573134 0.999 - . logic_name=eponine scaffold_30 . repeat_region 574920 574941 . ? . description=dust scaffold_30 . repeat_region 575192 575200 . ? . description=dust scaffold_30 . repeat_region 576180 576224 . ? . description=trf scaffold_30 . biological_region 577224 577226 0.999 - . logic_name=eponine scaffold_30 ensembl protein_coding_gene 573197 575063 . - . ID=Physo134250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300161;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 573197 575063 . - . ID=Physo134250;Parent=Physo134250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 573197 573416 . - 0 ID=Physo134250;Parent=Physo134250;rank=9 scaffold_30 . exon 573197 573416 . - . ID=Physo134250.9;Parent=Physo134250;constitutive=1;ensembl_phase=2;rank=9 scaffold_30 . CDS 573521 573588 . - 0 ID=Physo134250;Parent=Physo134250;rank=8 scaffold_30 . exon 573521 573588 . - . ID=Physo134250.8;Parent=Physo134250;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_30 . CDS 573672 573792 . - 0 ID=Physo134250;Parent=Physo134250;rank=7 scaffold_30 . exon 573672 573792 . - . ID=Physo134250.7;Parent=Physo134250;constitutive=1;ensembl_phase=2;rank=7 scaffold_30 . CDS 573863 574001 . - 0 ID=Physo134250;Parent=Physo134250;rank=6 scaffold_30 . exon 573863 574001 . - . ID=Physo134250.6;Parent=Physo134250;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_30 . CDS 574199 574210 . - 0 ID=Physo134250;Parent=Physo134250;rank=5 scaffold_30 . exon 574199 574210 . - . ID=Physo134250.5;Parent=Physo134250;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 574319 574457 . - 0 ID=Physo134250;Parent=Physo134250;rank=4 scaffold_30 . exon 574319 574457 . - . ID=Physo134250.4;Parent=Physo134250;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 574543 574700 . - 0 ID=Physo134250;Parent=Physo134250;rank=3 scaffold_30 . exon 574543 574700 . - . ID=Physo134250.3;Parent=Physo134250;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 574789 574879 . - 0 ID=Physo134250;Parent=Physo134250;rank=2 scaffold_30 . exon 574789 574879 . - . ID=Physo134250.2;Parent=Physo134250;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 574962 575063 . - 0 ID=Physo134250;Parent=Physo134250;rank=1 scaffold_30 . exon 574962 575063 . - . ID=Physo134250.1;Parent=Physo134250;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 575244 577211 . - . ID=Physo134251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300162;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 575244 577211 . - . ID=Physo134251;Parent=Physo134251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 575244 577211 . - 0 ID=Physo134251;Parent=Physo134251;rank=1 scaffold_30 . exon 575244 577211 . - . ID=Physo134251.1;Parent=Physo134251;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 568429 573136 . + . ID=Physo156898;biotype=protein_coding;external_name=C_scaffold_30000073;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 568429 573136 . + . ID=Physo156898;Parent=Physo156898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 568429 568602 . + 0 ID=Physo156898;Parent=Physo156898;rank=1 scaffold_30 . exon 568429 568602 . + . ID=Physo156898.1;Parent=Physo156898;constitutive=1;rank=1 scaffold_30 . CDS 568747 571384 . + 0 ID=Physo156898;Parent=Physo156898;rank=2 scaffold_30 . exon 568747 571384 . + . ID=Physo156898.2;Parent=Physo156898;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 571471 571598 . + 0 ID=Physo156898;Parent=Physo156898;rank=3 scaffold_30 . exon 571471 571598 . + . ID=Physo156898.3;Parent=Physo156898;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 571635 571771 . + 0 ID=Physo156898;Parent=Physo156898;rank=4 scaffold_30 . exon 571635 571771 . + . ID=Physo156898.4;Parent=Physo156898;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 571839 571909 . + 0 ID=Physo156898;Parent=Physo156898;rank=5 scaffold_30 . exon 571839 571909 . + . ID=Physo156898.5;Parent=Physo156898;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 571971 572047 . + 0 ID=Physo156898;Parent=Physo156898;rank=6 scaffold_30 . exon 571971 572047 . + . ID=Physo156898.6;Parent=Physo156898;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 572115 572195 . + 0 ID=Physo156898;Parent=Physo156898;rank=7 scaffold_30 . exon 572115 572195 . + . ID=Physo156898.7;Parent=Physo156898;constitutive=1;rank=7 scaffold_30 . CDS 572457 572585 . + 0 ID=Physo156898;Parent=Physo156898;rank=8 scaffold_30 . exon 572457 572585 . + . ID=Physo156898.8;Parent=Physo156898;constitutive=1;rank=8 scaffold_30 . CDS 572655 572801 . + 0 ID=Physo156898;Parent=Physo156898;rank=9 scaffold_30 . exon 572655 572801 . + . ID=Physo156898.9;Parent=Physo156898;constitutive=1;rank=9 scaffold_30 . CDS 572867 573136 . + 0 ID=Physo156898;Parent=Physo156898;rank=10 scaffold_30 . exon 572867 573136 . + . ID=Physo156898.10;Parent=Physo156898;constitutive=1;rank=10 scaffold_30 ensembl protein_coding_gene 577443 582054 . - . ID=Physo156900;biotype=protein_coding;external_name=C_scaffold_30000075;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 577443 582054 . - . ID=Physo156900;Parent=Physo156900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 577443 577750 . - 0 ID=Physo156900;Parent=Physo156900;rank=11 scaffold_30 . exon 577443 577750 . - . ID=Physo156900.11;Parent=Physo156900;constitutive=1;ensembl_phase=1;rank=11 scaffold_30 . CDS 577772 578234 . - 0 ID=Physo156900;Parent=Physo156900;rank=10 scaffold_30 . exon 577772 578234 . - . ID=Physo156900.10;Parent=Physo156900;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_30 . CDS 578526 578700 . - 0 ID=Physo156900;Parent=Physo156900;rank=9 scaffold_30 . CDS 578788 578891 . - 0 ID=Physo156900;Parent=Physo156900;rank=8 scaffold_30 . CDS 578965 579091 . - 0 ID=Physo156900;Parent=Physo156900;rank=7 scaffold_30 . CDS 579172 579773 . - 0 ID=Physo156900;Parent=Physo156900;rank=6 scaffold_30 . CDS 579867 580121 . - 0 ID=Physo156900;Parent=Physo156900;rank=5 scaffold_30 . CDS 580301 580477 . - 0 ID=Physo156900;Parent=Physo156900;rank=4 scaffold_30 . CDS 580526 580925 . - 0 ID=Physo156900;Parent=Physo156900;rank=3 scaffold_30 . CDS 581028 581497 . - 0 ID=Physo156900;Parent=Physo156900;rank=2 scaffold_30 . CDS 582052 582054 . - 0 ID=Physo156900;Parent=Physo156900;rank=1 scaffold_30 ensembl protein_coding_gene 581989 586741 . - . ID=Physo134255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300166;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 581989 586741 . - . ID=Physo134255;Parent=Physo134255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 581989 585332 . - 0 ID=Physo134255;Parent=Physo134255;rank=5 scaffold_30 . exon 581989 585332 . - . ID=Physo134255.5;Parent=Physo134255;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 585660 586015 . - 0 ID=Physo134255;Parent=Physo134255;rank=4 scaffold_30 . exon 585660 586015 . - . ID=Physo134255.4;Parent=Physo134255;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 586164 586344 . - 0 ID=Physo134255;Parent=Physo134255;rank=3 scaffold_30 . exon 586164 586344 . - . ID=Physo134255.3;Parent=Physo134255;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_30 . CDS 586414 586516 . - 0 ID=Physo134255;Parent=Physo134255;rank=2 scaffold_30 . exon 586414 586516 . - . ID=Physo134255.2;Parent=Physo134255;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 586565 586741 . - 0 ID=Physo134255;Parent=Physo134255;rank=1 scaffold_30 . exon 586565 586741 . - . ID=Physo134255.1;Parent=Physo134255;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 586973 588706 . + . ID=Physo134256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300167;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 586973 588706 . + . ID=Physo134256;Parent=Physo134256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 586973 588667 . + 0 ID=Physo134256;Parent=Physo134256;rank=1 scaffold_30 . exon 586973 588706 . + . ID=Physo134256.1;Parent=Physo134256;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_30 . exon 578526 578700 . - . ID=Physo156900.9;Parent=Physo156900;constitutive=1;ensembl_phase=2;rank=9 scaffold_30 . exon 578788 578891 . - . ID=Physo156900.8;Parent=Physo156900;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_30 . exon 578965 579091 . - . ID=Physo156900.7;Parent=Physo156900;constitutive=1;ensembl_phase=2;rank=7 scaffold_30 . exon 579172 579773 . - . ID=Physo156900.6;Parent=Physo156900;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_30 . exon 579867 580121 . - . ID=Physo156900.5;Parent=Physo156900;constitutive=1;rank=5 scaffold_30 . exon 580301 580477 . - . ID=Physo156900.4;Parent=Physo156900;constitutive=1;rank=4 scaffold_30 . exon 580526 580925 . - . ID=Physo156900.3;Parent=Physo156900;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . exon 581028 581497 . - . ID=Physo156900.2;Parent=Physo156900;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . exon 582052 582054 . - . ID=Physo156900.1;Parent=Physo156900;constitutive=1;rank=1 scaffold_30 . repeat_region 589556 589581 . ? . description=dust scaffold_30 . repeat_region 589556 589581 . ? . description=trf scaffold_30 . biological_region 590489 590492 0.999 - . logic_name=eponine scaffold_30 . repeat_region 591455 591467 . ? . description=dust scaffold_30 . biological_region 591532 591534 0.999 + . logic_name=eponine scaffold_30 . repeat_region 592592 592636 . ? . description=trf scaffold_30 . biological_region 592682 592686 0.999 - . logic_name=eponine scaffold_30 . biological_region 593499 593502 0.999 + . logic_name=eponine scaffold_30 . biological_region 596183 596183 0.999 - . logic_name=eponine scaffold_30 . biological_region 596527 596536 0.999 - . logic_name=eponine scaffold_30 . biological_region 596609 596614 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 591577 592329 . + . ID=Physo134258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300169;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 591577 592329 . + . ID=Physo134258;Parent=Physo134258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 591577 592329 . + 0 ID=Physo134258;Parent=Physo134258;rank=1 scaffold_30 . exon 591577 592329 . + . ID=Physo134258.1;Parent=Physo134258;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 592583 593810 . + . ID=Physo134259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300170;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 592583 593810 . + . ID=Physo134259;Parent=Physo134259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 592583 593684 . + 0 ID=Physo134259;Parent=Physo134259;rank=1 scaffold_30 . exon 592583 593684 . + . ID=Physo134259.1;Parent=Physo134259;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 593770 593810 . + 0 ID=Physo134259;Parent=Physo134259;rank=2 scaffold_30 . exon 593770 593810 . + . ID=Physo134259.2;Parent=Physo134259;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 ensembl protein_coding_gene 594603 596508 . - . ID=Physo134260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300171;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 594603 596508 . - . ID=Physo134260;Parent=Physo134260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 594603 594653 . - 0 ID=Physo134260;Parent=Physo134260;rank=3 scaffold_30 . exon 594603 594653 . - . ID=Physo134260.3;Parent=Physo134260;constitutive=1;rank=3 scaffold_30 . CDS 594704 594735 . - 0 ID=Physo134260;Parent=Physo134260;rank=2 scaffold_30 . exon 594704 594735 . - . ID=Physo134260.2;Parent=Physo134260;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 595083 596508 . - 0 ID=Physo134260;Parent=Physo134260;rank=1 scaffold_30 . exon 595083 596508 . - . ID=Physo134260.1;Parent=Physo134260;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 596638 597555 . + . ID=Physo134261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300172;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 596638 597555 . + . ID=Physo134261;Parent=Physo134261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 596638 597137 . + . ID=Physo134261.1;Parent=Physo134261;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 596672 597137 . + 0 ID=Physo134261;Parent=Physo134261;rank=1 scaffold_30 . CDS 597218 597325 . + 0 ID=Physo134261;Parent=Physo134261;rank=2 scaffold_30 . exon 597218 597325 . + . ID=Physo134261.2;Parent=Physo134261;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 597413 597555 . + 0 ID=Physo134261;Parent=Physo134261;rank=3 scaffold_30 . exon 597413 597555 . + . ID=Physo134261.3;Parent=Physo134261;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 ensembl protein_coding_gene 597736 598530 . - . ID=Physo134262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300173;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 597736 598530 . - . ID=Physo134262;Parent=Physo134262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 597736 598530 . - 0 ID=Physo134262;Parent=Physo134262;rank=1 scaffold_30 . exon 597736 598530 . - . ID=Physo134262.1;Parent=Physo134262;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 589152 590894 . - . ID=Physo156902;biotype=protein_coding;external_name=C_scaffold_30000077;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 589152 590894 . - . ID=Physo156902;Parent=Physo156902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 589152 589217 . - 0 ID=Physo156902;Parent=Physo156902;rank=8 scaffold_30 . exon 589152 589217 . - . ID=Physo156902.8;Parent=Physo156902;constitutive=1;rank=8 scaffold_30 . CDS 589493 589546 . - 0 ID=Physo156902;Parent=Physo156902;rank=7 scaffold_30 . exon 589493 589546 . - . ID=Physo156902.7;Parent=Physo156902;constitutive=1;rank=7 scaffold_30 . CDS 589640 589797 . - 0 ID=Physo156902;Parent=Physo156902;rank=6 scaffold_30 . exon 589640 589797 . - . ID=Physo156902.6;Parent=Physo156902;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 589857 589945 . - 0 ID=Physo156902;Parent=Physo156902;rank=5 scaffold_30 . exon 589857 589945 . - . ID=Physo156902.5;Parent=Physo156902;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 590057 590377 . - 0 ID=Physo156902;Parent=Physo156902;rank=4 scaffold_30 . exon 590057 590377 . - . ID=Physo156902.4;Parent=Physo156902;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_30 . CDS 590442 590542 . - 0 ID=Physo156902;Parent=Physo156902;rank=3 scaffold_30 . exon 590442 590542 . - . ID=Physo156902.3;Parent=Physo156902;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 590619 590728 . - 0 ID=Physo156902;Parent=Physo156902;rank=2 scaffold_30 . exon 590619 590728 . - . ID=Physo156902.2;Parent=Physo156902;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 590810 590894 . - 0 ID=Physo156902;Parent=Physo156902;rank=1 scaffold_30 . exon 590810 590894 . - . ID=Physo156902.1;Parent=Physo156902;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 600864 602489 . + . ID=Physo108771;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300022;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 600864 602489 . + . ID=Physo108771;Parent=Physo108771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 600864 601112 . + 0 ID=Physo108771;Parent=Physo108771;rank=1 scaffold_30 . exon 600864 601112 . + . ID=Physo108771.1;Parent=Physo108771;constitutive=1;rank=1 scaffold_30 . CDS 601338 602489 . + 0 ID=Physo108771;Parent=Physo108771;rank=2 scaffold_30 . exon 601338 602489 . + . ID=Physo108771.2;Parent=Physo108771;constitutive=1;rank=2 scaffold_30 ensembl protein_coding_gene 598682 600565 . - . ID=Physo134263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300174;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 598682 600565 . - . ID=Physo134263;Parent=Physo134263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 598682 600565 . - . ID=Physo134263.1;Parent=Physo134263;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_30 . CDS 598799 600565 . - 0 ID=Physo134263;Parent=Physo134263;rank=1 scaffold_30 ensembl protein_coding_gene 603607 604155 . - . ID=Physo134265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300176;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 603607 604155 . - . ID=Physo134265;Parent=Physo134265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 603607 604155 . - 0 ID=Physo134265;Parent=Physo134265;rank=1 scaffold_30 . exon 603607 604155 . - . ID=Physo134265.1;Parent=Physo134265;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 605225 606163 . - . ID=Physo134266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300177;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 605225 606163 . - . ID=Physo134266;Parent=Physo134266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 605225 606163 . - 0 ID=Physo134266;Parent=Physo134266;rank=1 scaffold_30 . exon 605225 606163 . - . ID=Physo134266.1;Parent=Physo134266;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 606496 607725 . - . ID=Physo134267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300178;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 606496 607725 . - . ID=Physo134267;Parent=Physo134267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 606496 607725 . - 0 ID=Physo134267;Parent=Physo134267;rank=1 scaffold_30 . exon 606496 607725 . - . ID=Physo134267.1;Parent=Physo134267;constitutive=1;rank=1 scaffold_30 . biological_region 608332 608333 0.999 - . logic_name=eponine scaffold_30 . biological_region 610510 610514 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 608326 610512 . - . ID=Physo134268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300179;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 608326 610512 . - . ID=Physo134268;Parent=Physo134268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 608326 609229 . - 0 ID=Physo134268;Parent=Physo134268;rank=3 scaffold_30 . exon 608326 609229 . - . ID=Physo134268.3;Parent=Physo134268;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 609309 609661 . - 0 ID=Physo134268;Parent=Physo134268;rank=2 scaffold_30 . exon 609309 609661 . - . ID=Physo134268.2;Parent=Physo134268;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 609736 610512 . - 0 ID=Physo134268;Parent=Physo134268;rank=1 scaffold_30 . exon 609736 610512 . - . ID=Physo134268.1;Parent=Physo134268;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 611475 612524 . + . ID=Physo134269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300180;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 611475 612524 . + . ID=Physo134269;Parent=Physo134269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 611475 612524 . + 0 ID=Physo134269;Parent=Physo134269;rank=1 scaffold_30 . exon 611475 612524 . + . ID=Physo134269.1;Parent=Physo134269;constitutive=1;rank=1 scaffold_30 . repeat_region 624811 624818 . ? . description=dust scaffold_30 . repeat_region 625672 625728 . ? . description=trf scaffold_30 ensembl protein_coding_gene 625566 627006 . + . ID=Physo108772;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300023;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 625566 627006 . + . ID=Physo108772;Parent=Physo108772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 625566 625915 . + . ID=Physo108772.1;Parent=Physo108772;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 625582 625915 . + 0 ID=Physo108772;Parent=Physo108772;rank=1 scaffold_30 . CDS 626278 626456 . + 0 ID=Physo108772;Parent=Physo108772;rank=2 scaffold_30 . exon 626278 626456 . + . ID=Physo108772.2;Parent=Physo108772;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 626623 626627 . + 0 ID=Physo108772;Parent=Physo108772;rank=3 scaffold_30 . exon 626623 626627 . + . ID=Physo108772.3;Parent=Physo108772;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 626773 626926 . + 0 ID=Physo108772;Parent=Physo108772;rank=4 scaffold_30 . exon 626773 627006 . + . ID=Physo108772.4;Parent=Physo108772;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_30 ensembl protein_coding_gene 627557 628495 . - . ID=Physo115988;biotype=protein_coding;external_name=estExt_Genewise1.C_300106;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 627557 628495 . - . ID=Physo115988;Parent=Physo115988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 627557 628105 . - 0 ID=Physo115988;Parent=Physo115988;rank=2 scaffold_30 . exon 627557 628105 . - . ID=Physo115988.2;Parent=Physo115988;constitutive=1;rank=2 scaffold_30 . CDS 628190 628495 . - 0 ID=Physo115988;Parent=Physo115988;rank=1 scaffold_30 ensembl protein_coding_gene 618558 619064 . + . ID=Physo134270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300181;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 618558 619064 . + . ID=Physo134270;Parent=Physo134270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 618558 619064 . + 0 ID=Physo134270;Parent=Physo134270;rank=1 scaffold_30 . exon 618558 619064 . + . ID=Physo134270.1;Parent=Physo134270;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 620975 624911 . - . ID=Physo134271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300182;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 620975 624911 . - . ID=Physo134271;Parent=Physo134271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 620975 621877 . - . ID=Physo134271.6;Parent=Physo134271;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_30 . CDS 621060 621877 . - 0 ID=Physo134271;Parent=Physo134271;rank=6 scaffold_30 . CDS 622004 622611 . - 0 ID=Physo134271;Parent=Physo134271;rank=5 scaffold_30 . exon 622004 622611 . - . ID=Physo134271.5;Parent=Physo134271;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 622708 622853 . - 0 ID=Physo134271;Parent=Physo134271;rank=4 scaffold_30 . exon 622708 622853 . - . ID=Physo134271.4;Parent=Physo134271;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 623136 623271 . - 0 ID=Physo134271;Parent=Physo134271;rank=3 scaffold_30 . exon 623136 623271 . - . ID=Physo134271.3;Parent=Physo134271;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 623304 623362 . - 0 ID=Physo134271;Parent=Physo134271;rank=2 scaffold_30 . exon 623304 623362 . - . ID=Physo134271.2;Parent=Physo134271;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 623388 624911 . - 0 ID=Physo134271;Parent=Physo134271;rank=1 scaffold_30 . exon 623388 624911 . - . ID=Physo134271.1;Parent=Physo134271;constitutive=1;rank=1 scaffold_30 . biological_region 630005 630006 0.999 + . logic_name=eponine scaffold_30 . biological_region 630020 630027 0.999 - . logic_name=eponine scaffold_30 . biological_region 630045 630047 0.999 + . logic_name=eponine scaffold_30 . biological_region 630052 630053 0.999 - . logic_name=eponine scaffold_30 . repeat_region 630124 630238 . + . description=(TCG)n scaffold_30 . biological_region 630901 630902 0.999 + . logic_name=eponine scaffold_30 . exon 628190 628495 . - . ID=Physo115988.1;Parent=Physo115988;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 628977 630043 . - . ID=Physo115990;biotype=protein_coding;external_name=estExt_Genewise1.C_300108;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 628977 630043 . - . ID=Physo115990;Parent=Physo115990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 628977 629117 . - 0 ID=Physo115990;Parent=Physo115990;rank=3 scaffold_30 . exon 628977 629117 . - . ID=Physo115990.3;Parent=Physo115990;constitutive=1;rank=3 scaffold_30 . CDS 629192 629751 . - 0 ID=Physo115990;Parent=Physo115990;rank=2 scaffold_30 . exon 629192 629751 . - . ID=Physo115990.2;Parent=Physo115990;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 629833 629962 . - 0 ID=Physo115990;Parent=Physo115990;rank=1 scaffold_30 . exon 629833 630043 . - . ID=Physo115990.1;Parent=Physo115990;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 631920 634133 . - . ID=Physo115999;biotype=protein_coding;external_name=estExt_Genewise1.C_300117;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 631920 634133 . - . ID=Physo115999;Parent=Physo115999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 631920 634070 . - 0 ID=Physo115999;Parent=Physo115999;rank=1 scaffold_30 . exon 631920 634133 . - . ID=Physo115999.1;Parent=Physo115999;constitutive=1;ensembl_phase=-1;rank=1 scaffold_30 . repeat_region 639760 639792 . ? . description=trf scaffold_30 . repeat_region 640813 640857 . ? . description=trf scaffold_30 . repeat_region 645268 645302 . ? . description=trf scaffold_30 . repeat_region 645268 645306 . + . description=(CAGT)n scaffold_30 . repeat_region 645272 645298 . ? . description=dust scaffold_30 ensembl protein_coding_gene 646672 648234 . + . ID=Physo134277;biotype=protein_coding;description=7 transmebrane protein Gpr8 [Source:UniProtKB/TrEMBL%3BAcc:B6VCX0];external_name=estExt_fgenesh1_pg.C_300188;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 646672 648234 . + . ID=Physo134277;Parent=Physo134277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 646672 646821 . + 0 ID=Physo134277;Parent=Physo134277;rank=1 scaffold_30 . exon 646672 646821 . + . ID=Physo134277.1;Parent=Physo134277;constitutive=1;rank=1 scaffold_30 . CDS 646897 647829 . + 0 ID=Physo134277;Parent=Physo134277;rank=2 scaffold_30 . exon 646897 647829 . + . ID=Physo134277.2;Parent=Physo134277;constitutive=1;rank=2 scaffold_30 . CDS 647887 648066 . + 0 ID=Physo134277;Parent=Physo134277;rank=3 scaffold_30 . CDS 648160 648234 . + 0 ID=Physo134277;Parent=Physo134277;rank=4 scaffold_30 ensembl protein_coding_gene 638737 645207 . - . ID=Physo156906;biotype=protein_coding;external_name=C_scaffold_30000081;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 638737 645207 . - . ID=Physo156906;Parent=Physo156906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 638737 639410 . - 0 ID=Physo156906;Parent=Physo156906;rank=8 scaffold_30 . exon 638737 639410 . - . ID=Physo156906.8;Parent=Physo156906;constitutive=1;ensembl_phase=1;rank=8 scaffold_30 . CDS 639476 640070 . - 0 ID=Physo156906;Parent=Physo156906;rank=7 scaffold_30 . exon 639476 640070 . - . ID=Physo156906.7;Parent=Physo156906;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_30 . CDS 640152 640276 . - 0 ID=Physo156906;Parent=Physo156906;rank=6 scaffold_30 . exon 640152 640276 . - . ID=Physo156906.6;Parent=Physo156906;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 640528 640529 . - 0 ID=Physo156906;Parent=Physo156906;rank=5 scaffold_30 . exon 640528 640529 . - . ID=Physo156906.5;Parent=Physo156906;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 640700 641064 . - 0 ID=Physo156906;Parent=Physo156906;rank=4 scaffold_30 . exon 640700 641064 . - . ID=Physo156906.4;Parent=Physo156906;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 641095 643646 . - 0 ID=Physo156906;Parent=Physo156906;rank=3 scaffold_30 . exon 641095 643646 . - . ID=Physo156906.3;Parent=Physo156906;constitutive=1;ensembl_phase=1;rank=3 scaffold_30 . CDS 643830 644583 . - 0 ID=Physo156906;Parent=Physo156906;rank=2 scaffold_30 . exon 643830 644583 . - . ID=Physo156906.2;Parent=Physo156906;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_30 . CDS 644638 645207 . - 0 ID=Physo156906;Parent=Physo156906;rank=1 scaffold_30 . exon 644638 645207 . - . ID=Physo156906.1;Parent=Physo156906;constitutive=1;rank=1 scaffold_30 . exon 647887 648066 . + . ID=Physo134277.3;Parent=Physo134277;constitutive=1;rank=3 scaffold_30 . exon 648160 648234 . + . ID=Physo134277.4;Parent=Physo134277;constitutive=1;rank=4 scaffold_30 . biological_region 659996 659998 0.999 + . logic_name=eponine scaffold_30 . repeat_region 666772 667101 . ? . description=trf scaffold_30 . biological_region 667113 667115 0.999 + . logic_name=eponine scaffold_30 . biological_region 667182 667185 0.999 + . logic_name=eponine scaffold_30 . repeat_region 667782 669142 . + . description=GypsyPi-1c_I-int scaffold_30 ensembl protein_coding_gene 662053 663741 . - . ID=Physo134278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300189;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 662053 663741 . - . ID=Physo134278;Parent=Physo134278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 662053 662984 . - 0 ID=Physo134278;Parent=Physo134278;rank=2 scaffold_30 . exon 662053 662984 . - . ID=Physo134278.2;Parent=Physo134278;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 663417 663741 . - 0 ID=Physo134278;Parent=Physo134278;rank=1 scaffold_30 . exon 663417 663741 . - . ID=Physo134278.1;Parent=Physo134278;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 667069 669531 . + . ID=Physo134279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300190;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 667069 669531 . + . ID=Physo134279;Parent=Physo134279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 667069 669531 . + 0 ID=Physo134279;Parent=Physo134279;rank=1 scaffold_30 . exon 667069 669531 . + . ID=Physo134279.1;Parent=Physo134279;constitutive=1;rank=1 scaffold_30 . repeat_region 672703 673986 . ? . description=dust scaffold_30 ensembl protein_coding_gene 669640 670721 . + . ID=Physo108774;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300025;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 669640 670721 . + . ID=Physo108774;Parent=Physo108774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 669640 669989 . + 0 ID=Physo108774;Parent=Physo108774;rank=1 scaffold_30 . exon 669640 669989 . + . ID=Physo108774.1;Parent=Physo108774;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 670715 670721 . + 0 ID=Physo108774;Parent=Physo108774;rank=2 scaffold_30 . exon 670715 670721 . + . ID=Physo108774.2;Parent=Physo108774;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 ensembl protein_coding_gene 675450 676786 . + . ID=Physo134281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300192;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 675450 676786 . + . ID=Physo134281;Parent=Physo134281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 675450 676501 . + 0 ID=Physo134281;Parent=Physo134281;rank=1 scaffold_30 . exon 675450 676501 . + . ID=Physo134281.1;Parent=Physo134281;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 676585 676786 . + 0 ID=Physo134281;Parent=Physo134281;rank=2 scaffold_30 . exon 676585 676786 . + . ID=Physo134281.2;Parent=Physo134281;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 ensembl protein_coding_gene 676919 677684 . - . ID=Physo134282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300193;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 676919 677684 . - . ID=Physo134282;Parent=Physo134282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 676919 677527 . - 0 ID=Physo134282;Parent=Physo134282;rank=2 scaffold_30 . exon 676919 677527 . - . ID=Physo134282.2;Parent=Physo134282;constitutive=1;rank=2 scaffold_30 . CDS 677628 677684 . - 0 ID=Physo134282;Parent=Physo134282;rank=1 scaffold_30 . exon 677628 677684 . - . ID=Physo134282.1;Parent=Physo134282;constitutive=1;rank=1 scaffold_30 . repeat_region 704102 704110 . ? . description=dust scaffold_30 . biological_region 704370 704370 0.999 + . logic_name=eponine scaffold_30 . biological_region 704395 704395 0.999 - . logic_name=eponine scaffold_30 . biological_region 704623 704628 0.999 - . logic_name=eponine scaffold_30 . biological_region 704892 704894 0.999 + . logic_name=eponine scaffold_30 . biological_region 704910 704914 0.999 + . logic_name=eponine scaffold_30 . biological_region 704989 704993 0.999 - . logic_name=eponine scaffold_30 . biological_region 705107 705109 0.999 + . logic_name=eponine scaffold_30 . biological_region 705129 705133 0.999 + . logic_name=eponine scaffold_30 . biological_region 705173 705173 0.999 - . logic_name=eponine scaffold_30 . biological_region 705400 705402 0.999 + . logic_name=eponine scaffold_30 . biological_region 705588 705591 0.999 + . logic_name=eponine scaffold_30 . biological_region 706867 706875 0.999 + . logic_name=eponine scaffold_30 ensembl protein_coding_gene 705304 707337 . + . ID=Physo134283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300194;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 705304 707337 . + . ID=Physo134283;Parent=Physo134283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 705304 707337 . + 0 ID=Physo134283;Parent=Physo134283;rank=1 scaffold_30 . exon 705304 707337 . + . ID=Physo134283.1;Parent=Physo134283;constitutive=1;rank=1 scaffold_30 . repeat_region 709518 709539 . ? . description=trf scaffold_30 . repeat_region 710217 710248 . ? . description=trf scaffold_30 ensembl protein_coding_gene 707924 709539 . - . ID=Physo108775;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300026;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 707924 709539 . - . ID=Physo108775;Parent=Physo108775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 707924 709277 . - . ID=Physo108775.2;Parent=Physo108775;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_30 . CDS 708199 709277 . - 0 ID=Physo108775;Parent=Physo108775;rank=2 scaffold_30 . CDS 709385 709511 . - 0 ID=Physo108775;Parent=Physo108775;rank=1 scaffold_30 . exon 709385 709539 . - . ID=Physo108775.1;Parent=Physo108775;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 ensembl protein_coding_gene 710193 712337 . + . ID=Physo108776;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_300027;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 710193 712337 . + . ID=Physo108776;Parent=Physo108776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 710193 710810 . + 0 ID=Physo108776;Parent=Physo108776;rank=1 scaffold_30 . exon 710193 710810 . + . ID=Physo108776.1;Parent=Physo108776;constitutive=1;rank=1 scaffold_30 . CDS 710896 711012 . + 0 ID=Physo108776;Parent=Physo108776;rank=2 scaffold_30 . exon 710896 711012 . + . ID=Physo108776.2;Parent=Physo108776;constitutive=1;rank=2 scaffold_30 . CDS 711090 711241 . + 0 ID=Physo108776;Parent=Physo108776;rank=3 scaffold_30 . exon 711090 711241 . + . ID=Physo108776.3;Parent=Physo108776;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_30 . CDS 711311 711380 . + 0 ID=Physo108776;Parent=Physo108776;rank=4 scaffold_30 . exon 711311 711380 . + . ID=Physo108776.4;Parent=Physo108776;constitutive=1;ensembl_phase=2;rank=4 scaffold_30 . CDS 711457 711716 . + 0 ID=Physo108776;Parent=Physo108776;rank=5 scaffold_30 . exon 711457 711716 . + . ID=Physo108776.5;Parent=Physo108776;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . CDS 712040 712154 . + 0 ID=Physo108776;Parent=Physo108776;rank=6 scaffold_30 . exon 712040 712154 . + . ID=Physo108776.6;Parent=Physo108776;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 . CDS 712230 712337 . + 0 ID=Physo108776;Parent=Physo108776;rank=7 scaffold_30 . exon 712230 712337 . + . ID=Physo108776.7;Parent=Physo108776;constitutive=1;rank=7 scaffold_30 ensembl protein_coding_gene 714383 715618 . + . ID=Physo134287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300198;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 714383 715618 . + . ID=Physo134287;Parent=Physo134287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . exon 714383 714480 . + . ID=Physo134287.1;Parent=Physo134287;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_30 . CDS 714396 714480 . + 0 ID=Physo134287;Parent=Physo134287;rank=1 scaffold_30 . CDS 714562 714665 . + 0 ID=Physo134287;Parent=Physo134287;rank=2 scaffold_30 . exon 714562 714665 . + . ID=Physo134287.2;Parent=Physo134287;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 714752 714910 . + 0 ID=Physo134287;Parent=Physo134287;rank=3 scaffold_30 . exon 714752 714910 . + . ID=Physo134287.3;Parent=Physo134287;constitutive=1;rank=3 scaffold_30 . CDS 715000 715134 . + 0 ID=Physo134287;Parent=Physo134287;rank=4 scaffold_30 . exon 715000 715134 . + . ID=Physo134287.4;Parent=Physo134287;constitutive=1;rank=4 scaffold_30 . CDS 715233 715310 . + 0 ID=Physo134287;Parent=Physo134287;rank=5 scaffold_30 . exon 715233 715310 . + . ID=Physo134287.5;Parent=Physo134287;constitutive=1;rank=5 scaffold_30 . CDS 715392 715466 . + 0 ID=Physo134287;Parent=Physo134287;rank=6 scaffold_30 . exon 715392 715618 . + . ID=Physo134287.6;Parent=Physo134287;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_30 ensembl protein_coding_gene 716340 716810 . + . ID=Physo134288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_300199;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 716340 716810 . + . ID=Physo134288;Parent=Physo134288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 716340 716810 . + 0 ID=Physo134288;Parent=Physo134288;rank=1 scaffold_30 . exon 716340 716810 . + . ID=Physo134288.1;Parent=Physo134288;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 712319 714207 . - . ID=Physo156909;biotype=protein_coding;external_name=C_scaffold_30000084;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 712319 714207 . - . ID=Physo156909;Parent=Physo156909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 712319 712333 . - 0 ID=Physo156909;Parent=Physo156909;rank=8 scaffold_30 . exon 712319 712333 . - . ID=Physo156909.8;Parent=Physo156909;constitutive=1;rank=8 scaffold_30 . CDS 712452 712705 . - 0 ID=Physo156909;Parent=Physo156909;rank=7 scaffold_30 . exon 712452 712705 . - . ID=Physo156909.7;Parent=Physo156909;constitutive=1;ensembl_phase=1;rank=7 scaffold_30 . CDS 712788 712911 . - 0 ID=Physo156909;Parent=Physo156909;rank=6 scaffold_30 . exon 712788 712911 . - . ID=Physo156909.6;Parent=Physo156909;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_30 . CDS 712984 713161 . - 0 ID=Physo156909;Parent=Physo156909;rank=5 scaffold_30 . exon 712984 713161 . - . ID=Physo156909.5;Parent=Physo156909;constitutive=1;ensembl_phase=2;rank=5 scaffold_30 . CDS 713224 713243 . - 0 ID=Physo156909;Parent=Physo156909;rank=4 scaffold_30 . exon 713224 713243 . - . ID=Physo156909.4;Parent=Physo156909;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_30 . CDS 713541 713672 . - 0 ID=Physo156909;Parent=Physo156909;rank=3 scaffold_30 . exon 713541 713672 . - . ID=Physo156909.3;Parent=Physo156909;constitutive=1;rank=3 scaffold_30 . CDS 713874 713995 . - 0 ID=Physo156909;Parent=Physo156909;rank=2 scaffold_30 . exon 713874 713995 . - . ID=Physo156909.2;Parent=Physo156909;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 714063 714207 . - 0 ID=Physo156909;Parent=Physo156909;rank=1 scaffold_30 . exon 714063 714207 . - . ID=Physo156909.1;Parent=Physo156909;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 ensembl protein_coding_gene 717279 718252 . + . ID=Physo156914;biotype=protein_coding;external_name=C_scaffold_30000089;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 717279 718252 . + . ID=Physo156914;Parent=Physo156914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 717279 717309 . + 0 ID=Physo156914;Parent=Physo156914;rank=1 scaffold_30 . exon 717279 717309 . + . ID=Physo156914.1;Parent=Physo156914;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_30 . CDS 717389 717477 . + 0 ID=Physo156914;Parent=Physo156914;rank=2 scaffold_30 . exon 717389 717477 . + . ID=Physo156914.2;Parent=Physo156914;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 717548 717683 . + 0 ID=Physo156914;Parent=Physo156914;rank=3 scaffold_30 . exon 717548 717683 . + . ID=Physo156914.3;Parent=Physo156914;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 717768 717850 . + 0 ID=Physo156914;Parent=Physo156914;rank=4 scaffold_30 . CDS 717964 718016 . + 0 ID=Physo156914;Parent=Physo156914;rank=5 scaffold_30 . CDS 718225 718252 . + 0 ID=Physo156914;Parent=Physo156914;rank=6 scaffold_30 . biological_region 725704 725705 0.999 + . logic_name=eponine scaffold_30 . exon 717768 717850 . + . ID=Physo156914.4;Parent=Physo156914;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . exon 717964 718016 . + . ID=Physo156914.5;Parent=Physo156914;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_30 . exon 718225 718252 . + . ID=Physo156914.6;Parent=Physo156914;constitutive=1;ensembl_phase=2;rank=6 scaffold_30 ensembl protein_coding_gene 719713 721774 . - . ID=Physo156915;biotype=protein_coding;external_name=C_scaffold_30000090;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 719713 721774 . - . ID=Physo156915;Parent=Physo156915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 719713 719819 . - 0 ID=Physo156915;Parent=Physo156915;rank=10 scaffold_30 . exon 719713 719819 . - . ID=Physo156915.10;Parent=Physo156915;constitutive=1;ensembl_phase=1;rank=10 scaffold_30 . CDS 719882 720003 . - 0 ID=Physo156915;Parent=Physo156915;rank=9 scaffold_30 . exon 719882 720003 . - . ID=Physo156915.9;Parent=Physo156915;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_30 . CDS 720063 720142 . - 0 ID=Physo156915;Parent=Physo156915;rank=8 scaffold_30 . exon 720063 720142 . - . ID=Physo156915.8;Parent=Physo156915;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_30 . CDS 720220 720471 . - 0 ID=Physo156915;Parent=Physo156915;rank=7 scaffold_30 . exon 720220 720471 . - . ID=Physo156915.7;Parent=Physo156915;constitutive=1;rank=7 scaffold_30 . CDS 720559 720723 . - 0 ID=Physo156915;Parent=Physo156915;rank=6 scaffold_30 . exon 720559 720723 . - . ID=Physo156915.6;Parent=Physo156915;constitutive=1;rank=6 scaffold_30 . CDS 720842 720978 . - 0 ID=Physo156915;Parent=Physo156915;rank=5 scaffold_30 . exon 720842 720978 . - . ID=Physo156915.5;Parent=Physo156915;constitutive=1;ensembl_phase=1;rank=5 scaffold_30 . CDS 721036 721111 . - 0 ID=Physo156915;Parent=Physo156915;rank=4 scaffold_30 . exon 721036 721111 . - . ID=Physo156915.4;Parent=Physo156915;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_30 . CDS 721186 721360 . - 0 ID=Physo156915;Parent=Physo156915;rank=3 scaffold_30 . exon 721186 721360 . - . ID=Physo156915.3;Parent=Physo156915;constitutive=1;ensembl_phase=2;rank=3 scaffold_30 . CDS 721427 721572 . - 0 ID=Physo156915;Parent=Physo156915;rank=2 scaffold_30 . exon 721427 721572 . - . ID=Physo156915.2;Parent=Physo156915;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_30 . CDS 721637 721774 . - 0 ID=Physo156915;Parent=Physo156915;rank=1 scaffold_30 . exon 721637 721774 . - . ID=Physo156915.1;Parent=Physo156915;constitutive=1;rank=1 scaffold_30 ensembl protein_coding_gene 721982 725475 . + . ID=Physo156916;biotype=protein_coding;external_name=C_scaffold_30000091;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 721982 725475 . + . ID=Physo156916;Parent=Physo156916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 721982 722001 . + 0 ID=Physo156916;Parent=Physo156916;rank=1 scaffold_30 . exon 721982 722001 . + . ID=Physo156916.1;Parent=Physo156916;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_30 . CDS 722075 722123 . + 0 ID=Physo156916;Parent=Physo156916;rank=2 scaffold_30 . exon 722075 722123 . + . ID=Physo156916.2;Parent=Physo156916;constitutive=1;ensembl_phase=2;rank=2 scaffold_30 . CDS 722234 722339 . + 0 ID=Physo156916;Parent=Physo156916;rank=3 scaffold_30 . exon 722234 722339 . + . ID=Physo156916.3;Parent=Physo156916;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_30 . CDS 722427 722572 . + 0 ID=Physo156916;Parent=Physo156916;rank=4 scaffold_30 . exon 722427 722572 . + . ID=Physo156916.4;Parent=Physo156916;constitutive=1;ensembl_phase=1;rank=4 scaffold_30 . CDS 722861 723368 . + 0 ID=Physo156916;Parent=Physo156916;rank=5 scaffold_30 . exon 722861 723368 . + . ID=Physo156916.5;Parent=Physo156916;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_30 . CDS 723969 724003 . + 0 ID=Physo156916;Parent=Physo156916;rank=6 scaffold_30 . exon 723969 724003 . + . ID=Physo156916.6;Parent=Physo156916;constitutive=1;ensembl_phase=1;rank=6 scaffold_30 . CDS 724690 724802 . + 0 ID=Physo156916;Parent=Physo156916;rank=7 scaffold_30 . exon 724690 724802 . + . ID=Physo156916.7;Parent=Physo156916;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_30 . CDS 724902 725475 . + 0 ID=Physo156916;Parent=Physo156916;rank=8 scaffold_30 . exon 724902 725475 . + . ID=Physo156916.8;Parent=Physo156916;constitutive=1;ensembl_phase=2;rank=8 scaffold_30 ensembl protein_coding_gene 725611 726531 . - . ID=Physo156917;biotype=protein_coding;external_name=C_scaffold_30000092;logic_name=jgi_physo1_1 scaffold_30 ensembl transcript 725611 726531 . - . ID=Physo156917;Parent=Physo156917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_30 . CDS 725611 726032 . - 0 ID=Physo156917;Parent=Physo156917;rank=2 scaffold_30 . exon 725611 726032 . - . ID=Physo156917.2;Parent=Physo156917;constitutive=1;ensembl_phase=1;rank=2 scaffold_30 . CDS 726120 726531 . - 0 ID=Physo156917;Parent=Physo156917;rank=1 scaffold_30 . exon 726120 726531 . - . ID=Physo156917.1;Parent=Physo156917;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_29 1 743417 scaffold_29 . repeat_region 1 416 . ? . description=dust scaffold_29 . repeat_region 1 422 . ? . description=trf scaffold_29 . repeat_region 1103 2106 . ? . description=dust scaffold_29 . biological_region 4671 4675 0.999 + . logic_name=eponine scaffold_29 . biological_region 4724 4726 0.999 + . logic_name=eponine scaffold_29 . biological_region 4752 4753 0.999 - . logic_name=eponine scaffold_29 . repeat_region 5323 6229 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 6526 6569 . ? . description=trf scaffold_29 . repeat_region 6627 6634 . ? . description=dust scaffold_29 . biological_region 6665 6670 0.999 + . logic_name=eponine scaffold_29 . biological_region 6703 6706 0.999 + . logic_name=eponine scaffold_29 . biological_region 6719 6721 0.999 + . logic_name=eponine scaffold_29 . repeat_region 7219 7260 . ? . description=dust scaffold_29 . repeat_region 7305 7403 . ? . description=dust scaffold_29 . repeat_region 8381 8598 . ? . description=trf scaffold_29 . repeat_region 8587 8647 . ? . description=dust scaffold_29 . repeat_region 8969 9461 . ? . description=trf scaffold_29 ensembl protein_coding_gene 4953 6283 . + . ID=Physo133934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290001;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 4953 6283 . + . ID=Physo133934;Parent=Physo133934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 4953 5031 . + 0 ID=Physo133934;Parent=Physo133934;rank=1 scaffold_29 . exon 4953 5031 . + . ID=Physo133934.1;Parent=Physo133934;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 5094 5401 . + 0 ID=Physo133934;Parent=Physo133934;rank=2 scaffold_29 . exon 5094 5401 . + . ID=Physo133934.2;Parent=Physo133934;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 5438 6283 . + 0 ID=Physo133934;Parent=Physo133934;rank=3 scaffold_29 . exon 5438 6283 . + . ID=Physo133934.3;Parent=Physo133934;constitutive=1;rank=3 scaffold_29 ensembl protein_coding_gene 9810 11084 . + . ID=Physo133935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290002;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 9810 11084 . + . ID=Physo133935;Parent=Physo133935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 9810 11084 . + 0 ID=Physo133935;Parent=Physo133935;rank=1 scaffold_29 . exon 9810 11084 . + . ID=Physo133935.1;Parent=Physo133935;constitutive=1;rank=1 scaffold_29 . repeat_region 20508 20515 . ? . description=dust scaffold_29 . repeat_region 20654 20663 . ? . description=dust scaffold_29 . repeat_region 23850 23890 . ? . description=dust scaffold_29 . biological_region 31862 31864 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 34696 36271 . - . ID=Physo133936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290003;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 34696 36271 . - . ID=Physo133936;Parent=Physo133936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 34696 34907 . - 0 ID=Physo133936;Parent=Physo133936;rank=6 scaffold_29 . exon 34696 34907 . - . ID=Physo133936.6;Parent=Physo133936;constitutive=1;ensembl_phase=1;rank=6 scaffold_29 . CDS 34991 35153 . - 0 ID=Physo133936;Parent=Physo133936;rank=5 scaffold_29 . exon 34991 35153 . - . ID=Physo133936.5;Parent=Physo133936;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_29 . CDS 35222 35289 . - 0 ID=Physo133936;Parent=Physo133936;rank=4 scaffold_29 . exon 35222 35289 . - . ID=Physo133936.4;Parent=Physo133936;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 35336 35751 . - 0 ID=Physo133936;Parent=Physo133936;rank=3 scaffold_29 . exon 35336 35751 . - . ID=Physo133936.3;Parent=Physo133936;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 36067 36180 . - 0 ID=Physo133936;Parent=Physo133936;rank=2 scaffold_29 . exon 36067 36180 . - . ID=Physo133936.2;Parent=Physo133936;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_29 . CDS 36216 36271 . - 0 ID=Physo133936;Parent=Physo133936;rank=1 scaffold_29 . exon 36216 36271 . - . ID=Physo133936.1;Parent=Physo133936;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . repeat_region 41190 41237 . ? . description=trf scaffold_29 . repeat_region 44895 44902 . ? . description=dust scaffold_29 . repeat_region 48882 50765 . ? . description=dust scaffold_29 ensembl protein_coding_gene 46344 51430 . - . ID=Physo115857;biotype=protein_coding;external_name=estExt_Genewise1.C_290082;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 46344 51430 . - . ID=Physo115857;Parent=Physo115857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 46344 46444 . - 0 ID=Physo115857;Parent=Physo115857;rank=4 scaffold_29 . exon 46344 46444 . - . ID=Physo115857.4;Parent=Physo115857;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 46568 46723 . - 0 ID=Physo115857;Parent=Physo115857;rank=3 scaffold_29 . exon 46568 46723 . - . ID=Physo115857.3;Parent=Physo115857;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 50834 50984 . - 0 ID=Physo115857;Parent=Physo115857;rank=2 scaffold_29 . CDS 51044 51430 . - 0 ID=Physo115857;Parent=Physo115857;rank=1 scaffold_29 ensembl protein_coding_gene 40181 41245 . + . ID=Physo133937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290004;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 40181 41245 . + . ID=Physo133937;Parent=Physo133937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 40181 41245 . + 0 ID=Physo133937;Parent=Physo133937;rank=1 scaffold_29 . exon 40181 41245 . + . ID=Physo133937.1;Parent=Physo133937;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 43458 44336 . + . ID=Physo133938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290005;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 43458 44336 . + . ID=Physo133938;Parent=Physo133938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 43458 44336 . + 0 ID=Physo133938;Parent=Physo133938;rank=1 scaffold_29 . exon 43458 44336 . + . ID=Physo133938.1;Parent=Physo133938;constitutive=1;rank=1 scaffold_29 . biological_region 55107 55109 0.999 + . logic_name=eponine scaffold_29 . biological_region 55128 55133 0.999 + . logic_name=eponine scaffold_29 . biological_region 55605 55610 0.999 + . logic_name=eponine scaffold_29 . biological_region 55616 55620 0.999 - . logic_name=eponine scaffold_29 . biological_region 55668 55675 0.999 - . logic_name=eponine scaffold_29 . biological_region 55873 55878 0.999 - . logic_name=eponine scaffold_29 . biological_region 57989 57992 0.999 - . logic_name=eponine scaffold_29 . biological_region 58011 58014 0.999 - . logic_name=eponine scaffold_29 . biological_region 58034 58037 0.999 - . logic_name=eponine scaffold_29 . biological_region 58751 58755 0.999 + . logic_name=eponine scaffold_29 . exon 50834 50984 . - . ID=Physo115857.2;Parent=Physo115857;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_29 . exon 51044 51430 . - . ID=Physo115857.1;Parent=Physo115857;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 55448 57272 . - . ID=Physo133940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290007;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 55448 57272 . - . ID=Physo133940;Parent=Physo133940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 55448 57272 . - . ID=Physo133940.1;Parent=Physo133940;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 55577 57256 . - 0 ID=Physo133940;Parent=Physo133940;rank=1 scaffold_29 ensembl protein_coding_gene 59202 61782 . + . ID=Physo133941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290008;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 59202 61782 . + . ID=Physo133941;Parent=Physo133941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 59202 59577 . + 0 ID=Physo133941;Parent=Physo133941;rank=1 scaffold_29 . exon 59202 59577 . + . ID=Physo133941.1;Parent=Physo133941;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 59668 59743 . + 0 ID=Physo133941;Parent=Physo133941;rank=2 scaffold_29 . CDS 59837 61451 . + 0 ID=Physo133941;Parent=Physo133941;rank=3 scaffold_29 . CDS 61627 61782 . + 0 ID=Physo133941;Parent=Physo133941;rank=4 scaffold_29 . repeat_region 62047 62095 . ? . description=dust scaffold_29 . repeat_region 62048 62077 . ? . description=trf scaffold_29 . repeat_region 62611 62674 . ? . description=dust scaffold_29 . repeat_region 63072 63079 . ? . description=dust scaffold_29 . repeat_region 63788 63816 . ? . description=trf scaffold_29 . repeat_region 63788 63816 . ? . description=dust scaffold_29 . repeat_region 64020 64086 . + . description=(CAG)n scaffold_29 . repeat_region 64031 64086 . ? . description=dust scaffold_29 . repeat_region 64161 64201 . ? . description=trf scaffold_29 . repeat_region 68745 68776 . ? . description=trf scaffold_29 . repeat_region 68749 68776 . ? . description=dust scaffold_29 . exon 59668 59743 . + . ID=Physo133941.2;Parent=Physo133941;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . exon 59837 61451 . + . ID=Physo133941.3;Parent=Physo133941;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . exon 61627 61782 . + . ID=Physo133941.4;Parent=Physo133941;constitutive=1;rank=4 scaffold_29 ensembl protein_coding_gene 63187 64755 . + . ID=Physo133942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290009;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 63187 64755 . + . ID=Physo133942;Parent=Physo133942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 63187 64755 . + 0 ID=Physo133942;Parent=Physo133942;rank=1 scaffold_29 . exon 63187 64755 . + . ID=Physo133942.1;Parent=Physo133942;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 65560 67869 . + . ID=Physo133943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290010;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 65560 67869 . + . ID=Physo133943;Parent=Physo133943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 65560 65619 . + 0 ID=Physo133943;Parent=Physo133943;rank=1 scaffold_29 . exon 65560 65619 . + . ID=Physo133943.1;Parent=Physo133943;constitutive=1;rank=1 scaffold_29 . CDS 65686 67869 . + 0 ID=Physo133943;Parent=Physo133943;rank=2 scaffold_29 . exon 65686 67869 . + . ID=Physo133943.2;Parent=Physo133943;constitutive=1;rank=2 scaffold_29 . biological_region 69767 69771 0.999 - . logic_name=eponine scaffold_29 . biological_region 69822 69825 0.999 + . logic_name=eponine scaffold_29 . biological_region 69883 69883 0.999 - . logic_name=eponine scaffold_29 . biological_region 70089 70094 0.999 + . logic_name=eponine scaffold_29 . biological_region 70133 70136 0.999 + . logic_name=eponine scaffold_29 . biological_region 70334 70341 0.999 + . logic_name=eponine scaffold_29 . biological_region 70446 70451 0.999 - . logic_name=eponine scaffold_29 . biological_region 70525 70526 0.999 + . logic_name=eponine scaffold_29 . biological_region 71387 71394 0.999 + . logic_name=eponine scaffold_29 . biological_region 71448 71449 0.999 + . logic_name=eponine scaffold_29 . biological_region 71466 71467 0.999 - . logic_name=eponine scaffold_29 . biological_region 71539 71544 0.999 + . logic_name=eponine scaffold_29 . biological_region 71590 71592 0.999 - . logic_name=eponine scaffold_29 . biological_region 71697 71701 0.999 + . logic_name=eponine scaffold_29 . biological_region 71737 71739 0.999 + . logic_name=eponine scaffold_29 . biological_region 71767 71771 0.999 - . logic_name=eponine scaffold_29 . biological_region 71787 71787 0.999 - . logic_name=eponine scaffold_29 . biological_region 73203 73204 0.999 + . logic_name=eponine scaffold_29 . biological_region 74536 74539 0.999 - . logic_name=eponine scaffold_29 . biological_region 75535 75537 0.999 + . logic_name=eponine scaffold_29 . biological_region 76951 76952 0.999 + . logic_name=eponine scaffold_29 . biological_region 76975 76976 0.999 + . logic_name=eponine scaffold_29 . biological_region 76991 76994 0.999 - . logic_name=eponine scaffold_29 . biological_region 77121 77121 0.999 + . logic_name=eponine scaffold_29 . biological_region 77225 77229 0.999 - . logic_name=eponine scaffold_29 . biological_region 77621 77625 0.999 + . logic_name=eponine scaffold_29 . biological_region 77654 77656 0.999 + . logic_name=eponine scaffold_29 . biological_region 77665 77669 0.999 - . logic_name=eponine scaffold_29 . biological_region 77713 77718 0.999 - . logic_name=eponine scaffold_29 . biological_region 78907 78914 0.999 + . logic_name=eponine scaffold_29 . biological_region 78982 78982 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 70733 73445 . + . ID=Physo133944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290011;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 70733 73445 . + . ID=Physo133944;Parent=Physo133944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 70733 73372 . + 0 ID=Physo133944;Parent=Physo133944;rank=1 scaffold_29 . exon 70733 73445 . + . ID=Physo133944.1;Parent=Physo133944;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 ensembl protein_coding_gene 75831 77875 . - . ID=Physo133945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290012;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 75831 77875 . - . ID=Physo133945;Parent=Physo133945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 75831 77875 . - . ID=Physo133945.1;Parent=Physo133945;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 75915 77795 . - 0 ID=Physo133945;Parent=Physo133945;rank=1 scaffold_29 . repeat_region 81709 81739 . ? . description=trf scaffold_29 . repeat_region 88100 88148 . ? . description=trf scaffold_29 . repeat_region 88629 88674 . ? . description=trf scaffold_29 ensembl protein_coding_gene 79762 82725 . - . ID=Physo133946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290013;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 79762 82725 . - . ID=Physo133946;Parent=Physo133946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 79762 82554 . - . ID=Physo133946.2;Parent=Physo133946;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_29 . CDS 79979 82554 . - 0 ID=Physo133946;Parent=Physo133946;rank=2 scaffold_29 . CDS 82647 82725 . - 0 ID=Physo133946;Parent=Physo133946;rank=1 scaffold_29 . exon 82647 82725 . - . ID=Physo133946.1;Parent=Physo133946;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 86279 87494 . + . ID=Physo133947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290014;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 86279 87494 . + . ID=Physo133947;Parent=Physo133947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 86279 86397 . + 0 ID=Physo133947;Parent=Physo133947;rank=1 scaffold_29 . exon 86279 86397 . + . ID=Physo133947.1;Parent=Physo133947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 86557 86945 . + 0 ID=Physo133947;Parent=Physo133947;rank=2 scaffold_29 . exon 86557 86945 . + . ID=Physo133947.2;Parent=Physo133947;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 87021 87153 . + 0 ID=Physo133947;Parent=Physo133947;rank=3 scaffold_29 . exon 87021 87153 . + . ID=Physo133947.3;Parent=Physo133947;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_29 . CDS 87284 87494 . + 0 ID=Physo133947;Parent=Physo133947;rank=4 scaffold_29 . exon 87284 87494 . + . ID=Physo133947.4;Parent=Physo133947;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . biological_region 94734 94737 0.999 + . logic_name=eponine scaffold_29 . biological_region 94826 94826 0.999 - . logic_name=eponine scaffold_29 . biological_region 95191 95194 0.999 + . logic_name=eponine scaffold_29 . biological_region 95285 95287 0.999 + . logic_name=eponine scaffold_29 . biological_region 96196 96198 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 90648 91889 . - . ID=Physo133948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290015;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 90648 91889 . - . ID=Physo133948;Parent=Physo133948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 90648 90985 . - . ID=Physo133948.3;Parent=Physo133948;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_29 . CDS 90706 90985 . - 0 ID=Physo133948;Parent=Physo133948;rank=3 scaffold_29 . CDS 91033 91451 . - 0 ID=Physo133948;Parent=Physo133948;rank=2 scaffold_29 . exon 91033 91451 . - . ID=Physo133948.2;Parent=Physo133948;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 91536 91889 . - 0 ID=Physo133948;Parent=Physo133948;rank=1 scaffold_29 . exon 91536 91889 . - . ID=Physo133948.1;Parent=Physo133948;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 94679 95437 . + . ID=Physo133949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290016;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 94679 95437 . + . ID=Physo133949;Parent=Physo133949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 94679 95437 . + 0 ID=Physo133949;Parent=Physo133949;rank=1 scaffold_29 . exon 94679 95437 . + . ID=Physo133949.1;Parent=Physo133949;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 97478 104148 . - . ID=Physo133950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290017;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 97478 104148 . - . ID=Physo133950;Parent=Physo133950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 97478 98147 . - 0 ID=Physo133950;Parent=Physo133950;rank=10 scaffold_29 . exon 97478 98147 . - . ID=Physo133950.10;Parent=Physo133950;constitutive=1;ensembl_phase=2;rank=10 scaffold_29 . CDS 98205 98354 . - 0 ID=Physo133950;Parent=Physo133950;rank=9 scaffold_29 . exon 98205 98354 . - . ID=Physo133950.9;Parent=Physo133950;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_29 . CDS 98468 100269 . - 0 ID=Physo133950;Parent=Physo133950;rank=8 scaffold_29 . exon 98468 100269 . - . ID=Physo133950.8;Parent=Physo133950;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_29 . CDS 100299 101075 . - 0 ID=Physo133950;Parent=Physo133950;rank=7 scaffold_29 . CDS 101438 101811 . - 0 ID=Physo133950;Parent=Physo133950;rank=6 scaffold_29 . CDS 101854 102823 . - 0 ID=Physo133950;Parent=Physo133950;rank=5 scaffold_29 . CDS 103064 103309 . - 0 ID=Physo133950;Parent=Physo133950;rank=4 scaffold_29 . CDS 103360 103533 . - 0 ID=Physo133950;Parent=Physo133950;rank=3 scaffold_29 . CDS 103604 103648 . - 0 ID=Physo133950;Parent=Physo133950;rank=2 scaffold_29 . CDS 103678 104148 . - 0 ID=Physo133950;Parent=Physo133950;rank=1 scaffold_29 . repeat_region 105698 105705 . ? . description=dust scaffold_29 . repeat_region 109037 109044 . ? . description=dust scaffold_29 . exon 100299 101075 . - . ID=Physo133950.7;Parent=Physo133950;constitutive=1;rank=7 scaffold_29 . exon 101438 101811 . - . ID=Physo133950.6;Parent=Physo133950;constitutive=1;ensembl_phase=1;rank=6 scaffold_29 . exon 101854 102823 . - . ID=Physo133950.5;Parent=Physo133950;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_29 . exon 103064 103309 . - . ID=Physo133950.4;Parent=Physo133950;constitutive=1;rank=4 scaffold_29 . exon 103360 103533 . - . ID=Physo133950.3;Parent=Physo133950;constitutive=1;rank=3 scaffold_29 . exon 103604 103648 . - . ID=Physo133950.2;Parent=Physo133950;constitutive=1;rank=2 scaffold_29 . exon 103678 104148 . - . ID=Physo133950.1;Parent=Physo133950;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 104815 105573 . - . ID=Physo133951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290018;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 104815 105573 . - . ID=Physo133951;Parent=Physo133951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 104815 105573 . - 0 ID=Physo133951;Parent=Physo133951;rank=1 scaffold_29 . exon 104815 105573 . - . ID=Physo133951.1;Parent=Physo133951;constitutive=1;rank=1 scaffold_29 . repeat_region 111738 111758 . ? . description=trf scaffold_29 . biological_region 112803 112804 0.999 + . logic_name=eponine scaffold_29 . biological_region 114446 114450 0.999 - . logic_name=eponine scaffold_29 . biological_region 115727 115733 0.999 + . logic_name=eponine scaffold_29 . biological_region 115758 115761 0.999 + . logic_name=eponine scaffold_29 . biological_region 115800 115808 0.999 + . logic_name=eponine scaffold_29 . biological_region 115804 115805 0.999 - . logic_name=eponine scaffold_29 . biological_region 115842 115846 0.999 + . logic_name=eponine scaffold_29 . biological_region 115859 115863 0.999 + . logic_name=eponine scaffold_29 . biological_region 115882 115884 0.999 + . logic_name=eponine scaffold_29 . biological_region 115889 115891 0.999 - . logic_name=eponine scaffold_29 . biological_region 115898 115904 0.999 - . logic_name=eponine scaffold_29 . biological_region 115983 115986 0.999 + . logic_name=eponine scaffold_29 . repeat_region 116062 116123 . ? . description=trf scaffold_29 ensembl protein_coding_gene 110300 110722 . - . ID=Physo133952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290019;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 110300 110722 . - . ID=Physo133952;Parent=Physo133952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 110300 110527 . - 0 ID=Physo133952;Parent=Physo133952;rank=2 scaffold_29 . exon 110300 110527 . - . ID=Physo133952.2;Parent=Physo133952;constitutive=1;rank=2 scaffold_29 . CDS 110591 110722 . - 0 ID=Physo133952;Parent=Physo133952;rank=1 scaffold_29 . exon 110591 110722 . - . ID=Physo133952.1;Parent=Physo133952;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 112261 114677 . + . ID=Physo133953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290020;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 112261 114677 . + . ID=Physo133953;Parent=Physo133953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 112261 112377 . + 0 ID=Physo133953;Parent=Physo133953;rank=1 scaffold_29 . exon 112261 112377 . + . ID=Physo133953.1;Parent=Physo133953;constitutive=1;rank=1 scaffold_29 . CDS 112424 112498 . + 0 ID=Physo133953;Parent=Physo133953;rank=2 scaffold_29 . exon 112424 112498 . + . ID=Physo133953.2;Parent=Physo133953;constitutive=1;rank=2 scaffold_29 . CDS 112575 112933 . + 0 ID=Physo133953;Parent=Physo133953;rank=3 scaffold_29 . exon 112575 112933 . + . ID=Physo133953.3;Parent=Physo133953;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_29 . CDS 113097 113485 . + 0 ID=Physo133953;Parent=Physo133953;rank=4 scaffold_29 . exon 113097 113485 . + . ID=Physo133953.4;Parent=Physo133953;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 113788 113806 . + 0 ID=Physo133953;Parent=Physo133953;rank=5 scaffold_29 . exon 113788 113806 . + . ID=Physo133953.5;Parent=Physo133953;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_29 . CDS 113827 114029 . + 0 ID=Physo133953;Parent=Physo133953;rank=6 scaffold_29 . exon 113827 114029 . + . ID=Physo133953.6;Parent=Physo133953;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_29 . CDS 114052 114677 . + 0 ID=Physo133953;Parent=Physo133953;rank=7 scaffold_29 . exon 114052 114677 . + . ID=Physo133953.7;Parent=Physo133953;constitutive=1;ensembl_phase=1;rank=7 scaffold_29 ensembl protein_coding_gene 114951 126164 . - . ID=Physo133954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290021;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 114951 126164 . - . ID=Physo133954;Parent=Physo133954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 114951 114990 . - 0 ID=Physo133954;Parent=Physo133954;rank=4 scaffold_29 . exon 114951 114990 . - . ID=Physo133954.4;Parent=Physo133954;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 115286 116158 . - 0 ID=Physo133954;Parent=Physo133954;rank=3 scaffold_29 . exon 115286 116158 . - . ID=Physo133954.3;Parent=Physo133954;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_29 . CDS 125431 126021 . - 0 ID=Physo133954;Parent=Physo133954;rank=2 scaffold_29 . CDS 126142 126164 . - 0 ID=Physo133954;Parent=Physo133954;rank=1 scaffold_29 . repeat_region 118949 125387 . ? . description=dust scaffold_29 . repeat_region 125786 125825 . ? . description=dust scaffold_29 . exon 125431 126021 . - . ID=Physo133954.2;Parent=Physo133954;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_29 . exon 126142 126164 . - . ID=Physo133954.1;Parent=Physo133954;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 ensembl protein_coding_gene 127054 127859 . - . ID=Physo133955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290022;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 127054 127859 . - . ID=Physo133955;Parent=Physo133955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 127054 127287 . - 0 ID=Physo133955;Parent=Physo133955;rank=3 scaffold_29 . exon 127054 127287 . - . ID=Physo133955.3;Parent=Physo133955;constitutive=1;rank=3 scaffold_29 . CDS 127354 127557 . - 0 ID=Physo133955;Parent=Physo133955;rank=2 scaffold_29 . exon 127354 127557 . - . ID=Physo133955.2;Parent=Physo133955;constitutive=1;rank=2 scaffold_29 . CDS 127635 127859 . - 0 ID=Physo133955;Parent=Physo133955;rank=1 scaffold_29 . exon 127635 127859 . - . ID=Physo133955.1;Parent=Physo133955;constitutive=1;rank=1 scaffold_29 . biological_region 131177 131183 0.999 - . logic_name=eponine scaffold_29 . repeat_region 133817 133904 . ? . description=trf scaffold_29 . repeat_region 136142 136220 . ? . description=trf scaffold_29 . biological_region 138292 138295 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 134389 134778 . + . ID=Physo133956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290023;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 134389 134778 . + . ID=Physo133956;Parent=Physo133956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 134389 134778 . + 0 ID=Physo133956;Parent=Physo133956;rank=1 scaffold_29 . exon 134389 134778 . + . ID=Physo133956.1;Parent=Physo133956;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 137224 145136 . + . ID=Physo133957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290024;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 137224 145136 . + . ID=Physo133957;Parent=Physo133957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 137224 139094 . + 0 ID=Physo133957;Parent=Physo133957;rank=1 scaffold_29 . exon 137224 139094 . + . ID=Physo133957.1;Parent=Physo133957;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 139213 140097 . + 0 ID=Physo133957;Parent=Physo133957;rank=2 scaffold_29 . CDS 140571 142342 . + 0 ID=Physo133957;Parent=Physo133957;rank=3 scaffold_29 . CDS 142478 144069 . + 0 ID=Physo133957;Parent=Physo133957;rank=4 scaffold_29 . CDS 144093 144686 . + 0 ID=Physo133957;Parent=Physo133957;rank=5 scaffold_29 . CDS 144712 144978 . + 0 ID=Physo133957;Parent=Physo133957;rank=6 scaffold_29 . CDS 145005 145136 . + 0 ID=Physo133957;Parent=Physo133957;rank=7 scaffold_29 . exon 139213 140097 . + . ID=Physo133957.2;Parent=Physo133957;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_29 . exon 140571 142342 . + . ID=Physo133957.3;Parent=Physo133957;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . exon 142478 144069 . + . ID=Physo133957.4;Parent=Physo133957;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . exon 144093 144686 . + . ID=Physo133957.5;Parent=Physo133957;constitutive=1;rank=5 scaffold_29 . exon 144712 144978 . + . ID=Physo133957.6;Parent=Physo133957;constitutive=1;rank=6 scaffold_29 . exon 145005 145136 . + . ID=Physo133957.7;Parent=Physo133957;constitutive=1;rank=7 scaffold_29 ensembl protein_coding_gene 148159 149382 . - . ID=Physo133958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290025;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 148159 149382 . - . ID=Physo133958;Parent=Physo133958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 148159 148255 . - 0 ID=Physo133958;Parent=Physo133958;rank=4 scaffold_29 . exon 148159 148255 . - . ID=Physo133958.4;Parent=Physo133958;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 148307 148399 . - 0 ID=Physo133958;Parent=Physo133958;rank=3 scaffold_29 . exon 148307 148399 . - . ID=Physo133958.3;Parent=Physo133958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_29 . CDS 148488 148893 . - 0 ID=Physo133958;Parent=Physo133958;rank=2 scaffold_29 . exon 148488 148893 . - . ID=Physo133958.2;Parent=Physo133958;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 148920 149382 . - 0 ID=Physo133958;Parent=Physo133958;rank=1 scaffold_29 . biological_region 149033 149036 0.999 - . logic_name=eponine scaffold_29 . biological_region 149088 149092 0.999 + . logic_name=eponine scaffold_29 . biological_region 149120 149123 0.999 - . logic_name=eponine scaffold_29 . biological_region 149202 149204 0.999 - . logic_name=eponine scaffold_29 . biological_region 149851 149851 0.999 - . logic_name=eponine scaffold_29 . biological_region 150287 150289 0.999 - . logic_name=eponine scaffold_29 . biological_region 151050 151053 0.999 + . logic_name=eponine scaffold_29 . repeat_region 152222 152229 . ? . description=dust scaffold_29 . biological_region 152993 152993 0.999 - . logic_name=eponine scaffold_29 . biological_region 154304 154305 0.999 + . logic_name=eponine scaffold_29 . biological_region 154383 154383 0.999 - . logic_name=eponine scaffold_29 . biological_region 154560 154566 0.999 - . logic_name=eponine scaffold_29 . biological_region 154602 154602 0.999 + . logic_name=eponine scaffold_29 . biological_region 154612 154617 0.999 - . logic_name=eponine scaffold_29 . repeat_region 154980 155016 . ? . description=trf scaffold_29 . biological_region 156040 156041 0.999 + . logic_name=eponine scaffold_29 . biological_region 156219 156223 0.999 - . logic_name=eponine scaffold_29 . biological_region 156276 156279 0.999 + . logic_name=eponine scaffold_29 . biological_region 156370 156374 0.999 - . logic_name=eponine scaffold_29 . biological_region 157667 157670 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 152229 153906 . - . ID=Physo108738;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_290001;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 152229 153906 . - . ID=Physo108738;Parent=Physo108738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 152229 153581 . - . ID=Physo108738.2;Parent=Physo108738;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_29 . CDS 152484 153581 . - 0 ID=Physo108738;Parent=Physo108738;rank=2 scaffold_29 . CDS 153684 153863 . - 0 ID=Physo108738;Parent=Physo108738;rank=1 scaffold_29 . exon 153684 153906 . - . ID=Physo108738.1;Parent=Physo108738;constitutive=1;ensembl_phase=-1;rank=1 scaffold_29 . exon 148920 149382 . - . ID=Physo133958.1;Parent=Physo133958;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 149575 150579 . + . ID=Physo133959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290026;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 149575 150579 . + . ID=Physo133959;Parent=Physo133959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 149575 150579 . + 0 ID=Physo133959;Parent=Physo133959;rank=1 scaffold_29 . exon 149575 150579 . + . ID=Physo133959.1;Parent=Physo133959;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 150951 152132 . + . ID=Physo133960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290027;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 150951 152132 . + . ID=Physo133960;Parent=Physo133960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 150951 152132 . + 0 ID=Physo133960;Parent=Physo133960;rank=1 scaffold_29 . exon 150951 152132 . + . ID=Physo133960.1;Parent=Physo133960;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 154207 156405 . + . ID=Physo133962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290029;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 154207 156405 . + . ID=Physo133962;Parent=Physo133962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 154207 156405 . + 0 ID=Physo133962;Parent=Physo133962;rank=1 scaffold_29 . exon 154207 156405 . + . ID=Physo133962.1;Parent=Physo133962;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 156488 157768 . - . ID=Physo133963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290030;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 156488 157768 . - . ID=Physo133963;Parent=Physo133963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 156488 157768 . - 0 ID=Physo133963;Parent=Physo133963;rank=1 scaffold_29 . exon 156488 157768 . - . ID=Physo133963.1;Parent=Physo133963;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 158316 161920 . - . ID=Physo133964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290031;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 158316 161920 . - . ID=Physo133964;Parent=Physo133964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 158316 158612 . - 0 ID=Physo133964;Parent=Physo133964;rank=3 scaffold_29 . exon 158316 158612 . - . ID=Physo133964.3;Parent=Physo133964;constitutive=1;rank=3 scaffold_29 . CDS 158690 159107 . - 0 ID=Physo133964;Parent=Physo133964;rank=2 scaffold_29 . CDS 159282 161920 . - 0 ID=Physo133964;Parent=Physo133964;rank=1 scaffold_29 ensembl protein_coding_gene 165888 166883 . - . ID=Physo108739;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_290002;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 165888 166883 . - . ID=Physo108739;Parent=Physo108739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 165888 166804 . - 0 ID=Physo108739;Parent=Physo108739;rank=2 scaffold_29 . exon 165888 166804 . - . ID=Physo108739.2;Parent=Physo108739;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 166838 166883 . - 0 ID=Physo108739;Parent=Physo108739;rank=1 scaffold_29 . exon 166838 166883 . - . ID=Physo108739.1;Parent=Physo108739;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . exon 158690 159107 . - . ID=Physo133964.2;Parent=Physo133964;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . exon 159282 161920 . - . ID=Physo133964.1;Parent=Physo133964;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . repeat_region 171340 171369 . ? . description=dust scaffold_29 . repeat_region 171340 171369 . ? . description=trf scaffold_29 . biological_region 172034 172040 0.999 - . logic_name=eponine scaffold_29 . biological_region 173967 173969 0.999 - . logic_name=eponine scaffold_29 . repeat_region 175197 175266 . - . description=Polinton-1_PI scaffold_29 . biological_region 178119 178120 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 168672 169526 . - . ID=Physo133966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290033;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 168672 169526 . - . ID=Physo133966;Parent=Physo133966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 168672 169526 . - 0 ID=Physo133966;Parent=Physo133966;rank=1 scaffold_29 . exon 168672 169526 . - . ID=Physo133966.1;Parent=Physo133966;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 170047 171755 . - . ID=Physo133967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290034;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 170047 171755 . - . ID=Physo133967;Parent=Physo133967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 170047 171604 . - 0 ID=Physo133967;Parent=Physo133967;rank=2 scaffold_29 . exon 170047 171604 . - . ID=Physo133967.2;Parent=Physo133967;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 171682 171755 . - 0 ID=Physo133967;Parent=Physo133967;rank=1 scaffold_29 . exon 171682 171755 . - . ID=Physo133967.1;Parent=Physo133967;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 ensembl protein_coding_gene 171965 173264 . + . ID=Physo133968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290035;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 171965 173264 . + . ID=Physo133968;Parent=Physo133968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 171965 172197 . + . ID=Physo133968.1;Parent=Physo133968;constitutive=1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 172066 172197 . + 0 ID=Physo133968;Parent=Physo133968;rank=1 scaffold_29 . CDS 172281 173264 . + 0 ID=Physo133968;Parent=Physo133968;rank=2 scaffold_29 . exon 172281 173264 . + . ID=Physo133968.2;Parent=Physo133968;constitutive=1;rank=2 scaffold_29 ensembl protein_coding_gene 173611 173943 . - . ID=Physo133969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290036;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 173611 173943 . - . ID=Physo133969;Parent=Physo133969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 173611 173943 . - 0 ID=Physo133969;Parent=Physo133969;rank=1 scaffold_29 . exon 173611 173943 . - . ID=Physo133969.1;Parent=Physo133969;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 176236 176926 . + . ID=Physo133970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290037;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 176236 176926 . + . ID=Physo133970;Parent=Physo133970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 176236 176511 . + 0 ID=Physo133970;Parent=Physo133970;rank=1 scaffold_29 . exon 176236 176511 . + . ID=Physo133970.1;Parent=Physo133970;constitutive=1;rank=1 scaffold_29 . CDS 176581 176650 . + 0 ID=Physo133970;Parent=Physo133970;rank=2 scaffold_29 . exon 176581 176650 . + . ID=Physo133970.2;Parent=Physo133970;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_29 . CDS 176724 176926 . + 0 ID=Physo133970;Parent=Physo133970;rank=3 scaffold_29 . exon 176724 176926 . + . ID=Physo133970.3;Parent=Physo133970;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 ensembl protein_coding_gene 177760 178304 . - . ID=Physo133971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290038;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 177760 178304 . - . ID=Physo133971;Parent=Physo133971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 177760 177956 . - 0 ID=Physo133971;Parent=Physo133971;rank=2 scaffold_29 . exon 177760 177956 . - . ID=Physo133971.2;Parent=Physo133971;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 178025 178304 . - 0 ID=Physo133971;Parent=Physo133971;rank=1 scaffold_29 . exon 178025 178304 . - . ID=Physo133971.1;Parent=Physo133971;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 178709 179858 . + . ID=Physo133972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290039;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 178709 179858 . + . ID=Physo133972;Parent=Physo133972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 178709 178811 . + 0 ID=Physo133972;Parent=Physo133972;rank=1 scaffold_29 . exon 178709 178811 . + . ID=Physo133972.1;Parent=Physo133972;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 178891 179674 . + 0 ID=Physo133972;Parent=Physo133972;rank=2 scaffold_29 . exon 178891 179674 . + . ID=Physo133972.2;Parent=Physo133972;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 179744 179858 . + 0 ID=Physo133972;Parent=Physo133972;rank=3 scaffold_29 . exon 179744 179858 . + . ID=Physo133972.3;Parent=Physo133972;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 ensembl protein_coding_gene 180138 181873 . - . ID=Physo133973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290040;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 180138 181873 . - . ID=Physo133973;Parent=Physo133973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 180138 180571 . - 0 ID=Physo133973;Parent=Physo133973;rank=6 scaffold_29 . exon 180138 180571 . - . ID=Physo133973.6;Parent=Physo133973;constitutive=1;ensembl_phase=1;rank=6 scaffold_29 . CDS 180654 180741 . - 0 ID=Physo133973;Parent=Physo133973;rank=5 scaffold_29 . exon 180654 180741 . - . ID=Physo133973.5;Parent=Physo133973;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_29 . CDS 180838 181020 . - 0 ID=Physo133973;Parent=Physo133973;rank=4 scaffold_29 . exon 180838 181020 . - . ID=Physo133973.4;Parent=Physo133973;constitutive=1;rank=4 scaffold_29 . CDS 181093 181239 . - 0 ID=Physo133973;Parent=Physo133973;rank=3 scaffold_29 . exon 181093 181239 . - . ID=Physo133973.3;Parent=Physo133973;constitutive=1;rank=3 scaffold_29 . CDS 181307 181657 . - 0 ID=Physo133973;Parent=Physo133973;rank=2 scaffold_29 . exon 181307 181657 . - . ID=Physo133973.2;Parent=Physo133973;constitutive=1;rank=2 scaffold_29 . CDS 181730 181873 . - 0 ID=Physo133973;Parent=Physo133973;rank=1 scaffold_29 . exon 181730 181873 . - . ID=Physo133973.1;Parent=Physo133973;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 183406 185487 . - . ID=Physo133974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290041;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 183406 185487 . - . ID=Physo133974;Parent=Physo133974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 183406 185487 . - 0 ID=Physo133974;Parent=Physo133974;rank=1 scaffold_29 . exon 183406 185487 . - . ID=Physo133974.1;Parent=Physo133974;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 186995 187897 . + . ID=Physo133975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290042;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 186995 187897 . + . ID=Physo133975;Parent=Physo133975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 186995 187897 . + 0 ID=Physo133975;Parent=Physo133975;rank=1 scaffold_29 . exon 186995 187897 . + . ID=Physo133975.1;Parent=Physo133975;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 188080 192677 . - . ID=Physo133976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290043;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 188080 192677 . - . ID=Physo133976;Parent=Physo133976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 188080 189559 . - 0 ID=Physo133976;Parent=Physo133976;rank=6 scaffold_29 . exon 188080 189559 . - . ID=Physo133976.6;Parent=Physo133976;constitutive=1;ensembl_phase=2;rank=6 scaffold_29 . CDS 189748 189823 . - 0 ID=Physo133976;Parent=Physo133976;rank=5 scaffold_29 . CDS 189942 191178 . - 0 ID=Physo133976;Parent=Physo133976;rank=4 scaffold_29 . CDS 191229 191250 . - 0 ID=Physo133976;Parent=Physo133976;rank=3 scaffold_29 . CDS 191395 191719 . - 0 ID=Physo133976;Parent=Physo133976;rank=2 scaffold_29 . CDS 191769 192672 . - 0 ID=Physo133976;Parent=Physo133976;rank=1 scaffold_29 . biological_region 189436 189437 0.999 + . logic_name=eponine scaffold_29 . repeat_region 194907 194919 . ? . description=dust scaffold_29 . biological_region 197580 197585 0.999 - . logic_name=eponine scaffold_29 . biological_region 197601 197603 0.999 - . logic_name=eponine scaffold_29 . biological_region 197657 197659 0.999 + . logic_name=eponine scaffold_29 . biological_region 197760 197762 0.999 - . logic_name=eponine scaffold_29 . biological_region 198115 198116 0.999 + . logic_name=eponine scaffold_29 . exon 189748 189823 . - . ID=Physo133976.5;Parent=Physo133976;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_29 . exon 189942 191178 . - . ID=Physo133976.4;Parent=Physo133976;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_29 . exon 191229 191250 . - . ID=Physo133976.3;Parent=Physo133976;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . exon 191395 191719 . - . ID=Physo133976.2;Parent=Physo133976;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . exon 191769 192677 . - . ID=Physo133976.1;Parent=Physo133976;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_29 ensembl protein_coding_gene 193016 194347 . - . ID=Physo133977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290044;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 193016 194347 . - . ID=Physo133977;Parent=Physo133977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 193016 194347 . - 0 ID=Physo133977;Parent=Physo133977;rank=1 scaffold_29 . exon 193016 194347 . - . ID=Physo133977.1;Parent=Physo133977;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 195096 196784 . + . ID=Physo133978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290045;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 195096 196784 . + . ID=Physo133978;Parent=Physo133978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 195096 196784 . + 0 ID=Physo133978;Parent=Physo133978;rank=1 scaffold_29 . exon 195096 196784 . + . ID=Physo133978.1;Parent=Physo133978;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 197507 199489 . + . ID=Physo133979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290046;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 197507 199489 . + . ID=Physo133979;Parent=Physo133979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 197507 199342 . + 0 ID=Physo133979;Parent=Physo133979;rank=1 scaffold_29 . exon 197507 199489 . + . ID=Physo133979.1;Parent=Physo133979;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 . repeat_region 205183 205329 . ? . description=trf scaffold_29 ensembl protein_coding_gene 199856 200581 . - . ID=Physo133980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290047;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 199856 200581 . - . ID=Physo133980;Parent=Physo133980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 199856 200581 . - 0 ID=Physo133980;Parent=Physo133980;rank=1 scaffold_29 . exon 199856 200581 . - . ID=Physo133980.1;Parent=Physo133980;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 206326 207282 . + . ID=Physo133981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290048;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 206326 207282 . + . ID=Physo133981;Parent=Physo133981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 206326 207282 . + 0 ID=Physo133981;Parent=Physo133981;rank=1 scaffold_29 . exon 206326 207282 . + . ID=Physo133981.1;Parent=Physo133981;constitutive=1;rank=1 scaffold_29 . biological_region 210661 210661 0.999 - . logic_name=eponine scaffold_29 . biological_region 212155 212157 0.999 + . logic_name=eponine scaffold_29 . repeat_region 213174 213181 . ? . description=dust scaffold_29 . biological_region 213719 213720 0.999 + . logic_name=eponine scaffold_29 . biological_region 213883 213886 0.999 + . logic_name=eponine scaffold_29 . biological_region 215749 215750 0.999 - . logic_name=eponine scaffold_29 . biological_region 216428 216428 0.999 - . logic_name=eponine scaffold_29 . biological_region 216772 216772 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 211552 212508 . - . ID=Physo133982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290049;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 211552 212508 . - . ID=Physo133982;Parent=Physo133982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 211552 212508 . - 0 ID=Physo133982;Parent=Physo133982;rank=1 scaffold_29 . exon 211552 212508 . - . ID=Physo133982.1;Parent=Physo133982;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 213651 214648 . + . ID=Physo133983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290050;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 213651 214648 . + . ID=Physo133983;Parent=Physo133983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 213651 213851 . + 0 ID=Physo133983;Parent=Physo133983;rank=1 scaffold_29 . exon 213651 213851 . + . ID=Physo133983.1;Parent=Physo133983;constitutive=1;rank=1 scaffold_29 . CDS 213884 214648 . + 0 ID=Physo133983;Parent=Physo133983;rank=2 scaffold_29 . exon 213884 214648 . + . ID=Physo133983.2;Parent=Physo133983;constitutive=1;rank=2 scaffold_29 ensembl protein_coding_gene 215152 216108 . + . ID=Physo133984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290051;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 215152 216108 . + . ID=Physo133984;Parent=Physo133984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 215152 216108 . + 0 ID=Physo133984;Parent=Physo133984;rank=1 scaffold_29 . exon 215152 216108 . + . ID=Physo133984.1;Parent=Physo133984;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 219217 222132 . - . ID=Physo133985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290052;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 219217 222132 . - . ID=Physo133985;Parent=Physo133985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 219217 222132 . - 0 ID=Physo133985;Parent=Physo133985;rank=1 scaffold_29 . exon 219217 222132 . - . ID=Physo133985.1;Parent=Physo133985;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 222393 224512 . + . ID=Physo133986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290053;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 222393 224512 . + . ID=Physo133986;Parent=Physo133986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 222393 222444 . + 0 ID=Physo133986;Parent=Physo133986;rank=1 scaffold_29 . exon 222393 222444 . + . ID=Physo133986.1;Parent=Physo133986;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 222526 222764 . + 0 ID=Physo133986;Parent=Physo133986;rank=2 scaffold_29 . exon 222526 222764 . + . ID=Physo133986.2;Parent=Physo133986;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 222834 223066 . + 0 ID=Physo133986;Parent=Physo133986;rank=3 scaffold_29 . exon 222834 223066 . + . ID=Physo133986.3;Parent=Physo133986;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_29 . CDS 223138 223531 . + 0 ID=Physo133986;Parent=Physo133986;rank=4 scaffold_29 . exon 223138 223531 . + . ID=Physo133986.4;Parent=Physo133986;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 223613 223948 . + 0 ID=Physo133986;Parent=Physo133986;rank=5 scaffold_29 . exon 223613 223948 . + . ID=Physo133986.5;Parent=Physo133986;constitutive=1;rank=5 scaffold_29 . CDS 224021 224086 . + 0 ID=Physo133986;Parent=Physo133986;rank=6 scaffold_29 . exon 224021 224086 . + . ID=Physo133986.6;Parent=Physo133986;constitutive=1;rank=6 scaffold_29 . CDS 224161 224226 . + 0 ID=Physo133986;Parent=Physo133986;rank=7 scaffold_29 . exon 224161 224226 . + . ID=Physo133986.7;Parent=Physo133986;constitutive=1;rank=7 scaffold_29 . CDS 224495 224512 . + 0 ID=Physo133986;Parent=Physo133986;rank=8 scaffold_29 . exon 224495 224512 . + . ID=Physo133986.8;Parent=Physo133986;constitutive=1;rank=8 scaffold_29 ensembl protein_coding_gene 224905 226278 . - . ID=Physo133987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290054;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 224905 226278 . - . ID=Physo133987;Parent=Physo133987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 224905 226278 . - 0 ID=Physo133987;Parent=Physo133987;rank=1 scaffold_29 . exon 224905 226278 . - . ID=Physo133987.1;Parent=Physo133987;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 226648 227151 . - . ID=Physo133988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290055;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 226648 227151 . - . ID=Physo133988;Parent=Physo133988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 226648 227151 . - 0 ID=Physo133988;Parent=Physo133988;rank=1 scaffold_29 . exon 226648 227151 . - . ID=Physo133988.1;Parent=Physo133988;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 227685 229063 . + . ID=Physo133989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290056;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 227685 229063 . + . ID=Physo133989;Parent=Physo133989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 227685 228831 . + 0 ID=Physo133989;Parent=Physo133989;rank=1 scaffold_29 . exon 227685 228831 . + . ID=Physo133989.1;Parent=Physo133989;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 228912 229063 . + 0 ID=Physo133989;Parent=Physo133989;rank=2 scaffold_29 . repeat_region 229095 229117 . ? . description=dust scaffold_29 . biological_region 233113 233114 0.999 - . logic_name=eponine scaffold_29 . repeat_region 233354 233388 . ? . description=dust scaffold_29 . repeat_region 234079 234087 . ? . description=dust scaffold_29 . repeat_region 234524 234532 . ? . description=dust scaffold_29 . exon 228912 229063 . + . ID=Physo133989.2;Parent=Physo133989;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 ensembl protein_coding_gene 230573 232081 . - . ID=Physo133990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290057;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 230573 232081 . - . ID=Physo133990;Parent=Physo133990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 230573 232081 . - 0 ID=Physo133990;Parent=Physo133990;rank=1 scaffold_29 . exon 230573 232081 . - . ID=Physo133990.1;Parent=Physo133990;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 232398 233098 . - . ID=Physo133991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290058;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 232398 233098 . - . ID=Physo133991;Parent=Physo133991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 232398 232589 . - 0 ID=Physo133991;Parent=Physo133991;rank=3 scaffold_29 . exon 232398 232589 . - . ID=Physo133991.3;Parent=Physo133991;constitutive=1;rank=3 scaffold_29 . CDS 232651 232899 . - 0 ID=Physo133991;Parent=Physo133991;rank=2 scaffold_29 . exon 232651 232899 . - . ID=Physo133991.2;Parent=Physo133991;constitutive=1;rank=2 scaffold_29 . CDS 232958 233098 . - 0 ID=Physo133991;Parent=Physo133991;rank=1 scaffold_29 . exon 232958 233098 . - . ID=Physo133991.1;Parent=Physo133991;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 238976 239864 . - . ID=Physo133992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290059;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 238976 239864 . - . ID=Physo133992;Parent=Physo133992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 238976 239600 . - 0 ID=Physo133992;Parent=Physo133992;rank=2 scaffold_29 . exon 238976 239600 . - . ID=Physo133992.2;Parent=Physo133992;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 239673 239836 . - 0 ID=Physo133992;Parent=Physo133992;rank=1 scaffold_29 . exon 239673 239864 . - . ID=Physo133992.1;Parent=Physo133992;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_29 ensembl protein_coding_gene 240305 241006 . + . ID=Physo133993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290060;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 240305 241006 . + . ID=Physo133993;Parent=Physo133993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 240305 240360 . + 0 ID=Physo133993;Parent=Physo133993;rank=1 scaffold_29 . exon 240305 240360 . + . ID=Physo133993.1;Parent=Physo133993;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 240505 241006 . + 0 ID=Physo133993;Parent=Physo133993;rank=2 scaffold_29 . exon 240505 241006 . + . ID=Physo133993.2;Parent=Physo133993;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 ensembl protein_coding_gene 241677 242960 . + . ID=Physo133994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290061;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 241677 242960 . + . ID=Physo133994;Parent=Physo133994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 241677 242960 . + 0 ID=Physo133994;Parent=Physo133994;rank=1 scaffold_29 . exon 241677 242960 . + . ID=Physo133994.1;Parent=Physo133994;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 243591 244202 . + . ID=Physo133995;biotype=protein_coding;description=PsAvh205 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Z2];external_name=estExt_fgenesh1_pg.C_290062;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 243591 244202 . + . ID=Physo133995;Parent=Physo133995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 243591 244202 . + 0 ID=Physo133995;Parent=Physo133995;rank=1 scaffold_29 . exon 243591 244202 . + . ID=Physo133995.1;Parent=Physo133995;constitutive=1;rank=1 scaffold_29 . biological_region 248919 248922 0.999 - . logic_name=eponine scaffold_29 . repeat_region 249200 249229 . ? . description=trf scaffold_29 . biological_region 254952 254956 0.999 + . logic_name=eponine scaffold_29 . biological_region 256014 256017 0.999 + . logic_name=eponine scaffold_29 . biological_region 256462 256467 0.999 + . logic_name=eponine scaffold_29 . biological_region 257143 257146 0.999 + . logic_name=eponine scaffold_29 . biological_region 257235 257239 0.999 + . logic_name=eponine scaffold_29 . biological_region 257406 257409 0.999 - . logic_name=eponine scaffold_29 . biological_region 257429 257436 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 248362 249660 . - . ID=Physo133996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290063;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 248362 249660 . - . ID=Physo133996;Parent=Physo133996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 248362 248380 . - 0 ID=Physo133996;Parent=Physo133996;rank=3 scaffold_29 . exon 248362 248380 . - . ID=Physo133996.3;Parent=Physo133996;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 248488 249478 . - 0 ID=Physo133996;Parent=Physo133996;rank=2 scaffold_29 . exon 248488 249478 . - . ID=Physo133996.2;Parent=Physo133996;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 249570 249660 . - 0 ID=Physo133996;Parent=Physo133996;rank=1 scaffold_29 . exon 249570 249660 . - . ID=Physo133996.1;Parent=Physo133996;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 252366 254309 . - . ID=Physo133997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290064;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 252366 254309 . - . ID=Physo133997;Parent=Physo133997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 252366 252731 . - . ID=Physo133997.8;Parent=Physo133997;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=8 scaffold_29 . CDS 252367 252731 . - 0 ID=Physo133997;Parent=Physo133997;rank=8 scaffold_29 . CDS 252799 253090 . - 0 ID=Physo133997;Parent=Physo133997;rank=7 scaffold_29 . exon 252799 253090 . - . ID=Physo133997.7;Parent=Physo133997;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_29 . CDS 253197 253489 . - 0 ID=Physo133997;Parent=Physo133997;rank=6 scaffold_29 . exon 253197 253489 . - . ID=Physo133997.6;Parent=Physo133997;constitutive=1;ensembl_phase=1;rank=6 scaffold_29 . CDS 253553 253639 . - 0 ID=Physo133997;Parent=Physo133997;rank=5 scaffold_29 . exon 253553 253639 . - . ID=Physo133997.5;Parent=Physo133997;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_29 . CDS 253701 253800 . - 0 ID=Physo133997;Parent=Physo133997;rank=4 scaffold_29 . exon 253701 253800 . - . ID=Physo133997.4;Parent=Physo133997;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_29 . CDS 253941 253946 . - 0 ID=Physo133997;Parent=Physo133997;rank=3 scaffold_29 . exon 253941 253946 . - . ID=Physo133997.3;Parent=Physo133997;constitutive=1;rank=3 scaffold_29 . CDS 254011 254161 . - 0 ID=Physo133997;Parent=Physo133997;rank=2 scaffold_29 . exon 254011 254161 . - . ID=Physo133997.2;Parent=Physo133997;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 254221 254309 . - 0 ID=Physo133997;Parent=Physo133997;rank=1 scaffold_29 . exon 254221 254309 . - . ID=Physo133997.1;Parent=Physo133997;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 ensembl protein_coding_gene 254731 260702 . + . ID=Physo133998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290065;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 254731 260702 . + . ID=Physo133998;Parent=Physo133998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 254731 254790 . + 0 ID=Physo133998;Parent=Physo133998;rank=1 scaffold_29 . exon 254731 254790 . + . ID=Physo133998.1;Parent=Physo133998;constitutive=1;rank=1 scaffold_29 . CDS 254821 255173 . + 0 ID=Physo133998;Parent=Physo133998;rank=2 scaffold_29 . exon 254821 255173 . + . ID=Physo133998.2;Parent=Physo133998;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 255257 255395 . + 0 ID=Physo133998;Parent=Physo133998;rank=3 scaffold_29 . exon 255257 255395 . + . ID=Physo133998.3;Parent=Physo133998;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 255554 255852 . + 0 ID=Physo133998;Parent=Physo133998;rank=4 scaffold_29 . exon 255554 255852 . + . ID=Physo133998.4;Parent=Physo133998;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_29 . CDS 256007 256416 . + 0 ID=Physo133998;Parent=Physo133998;rank=5 scaffold_29 . exon 256007 256416 . + . ID=Physo133998.5;Parent=Physo133998;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_29 . CDS 256939 256983 . + 0 ID=Physo133998;Parent=Physo133998;rank=6 scaffold_29 . exon 256939 256983 . + . ID=Physo133998.6;Parent=Physo133998;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_29 . CDS 257214 257604 . + 0 ID=Physo133998;Parent=Physo133998;rank=7 scaffold_29 . exon 257214 257604 . + . ID=Physo133998.7;Parent=Physo133998;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_29 . CDS 257688 257721 . + 0 ID=Physo133998;Parent=Physo133998;rank=8 scaffold_29 . exon 257688 257721 . + . ID=Physo133998.8;Parent=Physo133998;constitutive=1;ensembl_phase=2;rank=8 scaffold_29 . CDS 257766 257859 . + 0 ID=Physo133998;Parent=Physo133998;rank=9 scaffold_29 . CDS 257961 258242 . + 0 ID=Physo133998;Parent=Physo133998;rank=10 scaffold_29 . CDS 258265 258377 . + 0 ID=Physo133998;Parent=Physo133998;rank=11 scaffold_29 . CDS 258438 258729 . + 0 ID=Physo133998;Parent=Physo133998;rank=12 scaffold_29 . CDS 258792 258881 . + 0 ID=Physo133998;Parent=Physo133998;rank=13 scaffold_29 . CDS 258925 259215 . + 0 ID=Physo133998;Parent=Physo133998;rank=14 scaffold_29 . CDS 259660 260254 . + 0 ID=Physo133998;Parent=Physo133998;rank=15 scaffold_29 . CDS 260291 260702 . + 0 ID=Physo133998;Parent=Physo133998;rank=16 scaffold_29 . exon 257766 257859 . + . ID=Physo133998.9;Parent=Physo133998;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_29 . exon 257961 258242 . + . ID=Physo133998.10;Parent=Physo133998;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_29 . exon 258265 258377 . + . ID=Physo133998.11;Parent=Physo133998;constitutive=1;ensembl_phase=1;rank=11 scaffold_29 . exon 258438 258729 . + . ID=Physo133998.12;Parent=Physo133998;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_29 . exon 258792 258881 . + . ID=Physo133998.13;Parent=Physo133998;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_29 . exon 258925 259215 . + . ID=Physo133998.14;Parent=Physo133998;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_29 . exon 259660 260254 . + . ID=Physo133998.15;Parent=Physo133998;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=15 scaffold_29 . exon 260291 260702 . + . ID=Physo133998.16;Parent=Physo133998;constitutive=1;ensembl_phase=2;rank=16 scaffold_29 ensembl protein_coding_gene 261040 262237 . - . ID=Physo133999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290066;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 261040 262237 . - . ID=Physo133999;Parent=Physo133999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 261040 261093 . - 0 ID=Physo133999;Parent=Physo133999;rank=2 scaffold_29 . exon 261040 261093 . - . ID=Physo133999.2;Parent=Physo133999;constitutive=1;rank=2 scaffold_29 . CDS 261143 262237 . - 0 ID=Physo133999;Parent=Physo133999;rank=1 scaffold_29 . exon 261143 262237 . - . ID=Physo133999.1;Parent=Physo133999;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 265036 265728 . + . ID=Physo134000;biotype=protein_coding;description=PsAvh229 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Z3];external_name=estExt_fgenesh1_pg.C_290067;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 265036 265728 . + . ID=Physo134000;Parent=Physo134000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 265036 265728 . + 0 ID=Physo134000;Parent=Physo134000;rank=1 scaffold_29 . exon 265036 265728 . + . ID=Physo134000.1;Parent=Physo134000;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 266960 269814 . + . ID=Physo134001;biotype=protein_coding;description=PsAvh50 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Z4];external_name=estExt_fgenesh1_pg.C_290068;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 266960 269814 . + . ID=Physo134001;Parent=Physo134001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 266960 267506 . + 0 ID=Physo134001;Parent=Physo134001;rank=1 scaffold_29 . exon 266960 267506 . + . ID=Physo134001.1;Parent=Physo134001;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 268646 269739 . + 0 ID=Physo134001;Parent=Physo134001;rank=2 scaffold_29 . repeat_region 274072 274107 . ? . description=trf scaffold_29 . repeat_region 274287 274340 . ? . description=trf scaffold_29 . repeat_region 274809 274835 . ? . description=trf scaffold_29 . biological_region 277217 277217 0.999 - . logic_name=eponine scaffold_29 . exon 268646 269814 . + . ID=Physo134001.2;Parent=Physo134001;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_29 ensembl protein_coding_gene 270775 272619 . + . ID=Physo134002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290069;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 270775 272619 . + . ID=Physo134002;Parent=Physo134002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 270775 272619 . + 0 ID=Physo134002;Parent=Physo134002;rank=1 scaffold_29 . exon 270775 272619 . + . ID=Physo134002.1;Parent=Physo134002;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 274163 276091 . + . ID=Physo134003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290070;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 274163 276091 . + . ID=Physo134003;Parent=Physo134003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 274163 276091 . + 0 ID=Physo134003;Parent=Physo134003;rank=1 scaffold_29 . exon 274163 276091 . + . ID=Physo134003.1;Parent=Physo134003;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 276288 277318 . - . ID=Physo134004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290071;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 276288 277318 . - . ID=Physo134004;Parent=Physo134004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 276288 277318 . - . ID=Physo134004.1;Parent=Physo134004;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 . CDS 276365 277318 . - 0 ID=Physo134004;Parent=Physo134004;rank=1 scaffold_29 . repeat_region 281730 281743 . ? . description=dust scaffold_29 . repeat_region 284053 284060 . ? . description=dust scaffold_29 ensembl protein_coding_gene 278297 279250 . - . ID=Physo134005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290072;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 278297 279250 . - . ID=Physo134005;Parent=Physo134005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 278297 279250 . - 0 ID=Physo134005;Parent=Physo134005;rank=1 scaffold_29 . exon 278297 279250 . - . ID=Physo134005.1;Parent=Physo134005;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 282185 283419 . + . ID=Physo134006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290073;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 282185 283419 . + . ID=Physo134006;Parent=Physo134006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 282185 283183 . + 0 ID=Physo134006;Parent=Physo134006;rank=1 scaffold_29 . exon 282185 283419 . + . ID=Physo134006.1;Parent=Physo134006;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 ensembl protein_coding_gene 283695 284614 . + . ID=Physo134007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290074;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 283695 284614 . + . ID=Physo134007;Parent=Physo134007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 283695 283965 . + 0 ID=Physo134007;Parent=Physo134007;rank=1 scaffold_29 . exon 283695 283965 . + . ID=Physo134007.1;Parent=Physo134007;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 284076 284454 . + 0 ID=Physo134007;Parent=Physo134007;rank=2 scaffold_29 . exon 284076 284454 . + . ID=Physo134007.2;Parent=Physo134007;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 284527 284614 . + 0 ID=Physo134007;Parent=Physo134007;rank=3 scaffold_29 . exon 284527 284614 . + . ID=Physo134007.3;Parent=Physo134007;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 ensembl protein_coding_gene 284730 286007 . - . ID=Physo134008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290075;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 284730 286007 . - . ID=Physo134008;Parent=Physo134008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 284730 284851 . - 0 ID=Physo134008;Parent=Physo134008;rank=5 scaffold_29 . exon 284730 284851 . - . ID=Physo134008.5;Parent=Physo134008;constitutive=1;ensembl_phase=1;rank=5 scaffold_29 . CDS 284914 285463 . - 0 ID=Physo134008;Parent=Physo134008;rank=4 scaffold_29 . exon 284914 285463 . - . ID=Physo134008.4;Parent=Physo134008;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_29 . CDS 285584 285676 . - 0 ID=Physo134008;Parent=Physo134008;rank=3 scaffold_29 . exon 285584 285676 . - . ID=Physo134008.3;Parent=Physo134008;constitutive=1;rank=3 scaffold_29 . CDS 285842 285848 . - 0 ID=Physo134008;Parent=Physo134008;rank=2 scaffold_29 . exon 285842 285848 . - . ID=Physo134008.2;Parent=Physo134008;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 285997 286007 . - 0 ID=Physo134008;Parent=Physo134008;rank=1 scaffold_29 . exon 285997 286007 . - . ID=Physo134008.1;Parent=Physo134008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . biological_region 287885 287889 0.999 - . logic_name=eponine scaffold_29 . biological_region 292702 292705 0.999 + . logic_name=eponine scaffold_29 . biological_region 292918 292921 0.999 + . logic_name=eponine scaffold_29 . repeat_region 298262 298281 . ? . description=trf scaffold_29 . repeat_region 301975 303198 . + . description=Gypsy-1-I_PI-int scaffold_29 . repeat_region 306003 306014 . ? . description=dust scaffold_29 . repeat_region 306498 306508 . ? . description=dust scaffold_29 . biological_region 309747 309750 0.999 - . logic_name=eponine scaffold_29 . biological_region 314245 314245 0.999 + . logic_name=eponine scaffold_29 . biological_region 314312 314314 0.999 + . logic_name=eponine scaffold_29 . biological_region 314338 314339 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 312484 313299 . - . ID=Physo134009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290076;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 312484 313299 . - . ID=Physo134009;Parent=Physo134009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 312484 312647 . - . ID=Physo134009.3;Parent=Physo134009;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_29 . CDS 312567 312647 . - 0 ID=Physo134009;Parent=Physo134009;rank=3 scaffold_29 . CDS 312716 312832 . - 0 ID=Physo134009;Parent=Physo134009;rank=2 scaffold_29 . exon 312716 312832 . - . ID=Physo134009.2;Parent=Physo134009;constitutive=1;rank=2 scaffold_29 . CDS 312913 313299 . - 0 ID=Physo134009;Parent=Physo134009;rank=1 scaffold_29 . exon 312913 313299 . - . ID=Physo134009.1;Parent=Physo134009;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 316760 319209 . + . ID=Physo134010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290077;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 316760 319209 . + . ID=Physo134010;Parent=Physo134010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 316760 317969 . + 0 ID=Physo134010;Parent=Physo134010;rank=1 scaffold_29 . exon 316760 317969 . + . ID=Physo134010.1;Parent=Physo134010;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 318065 318387 . + 0 ID=Physo134010;Parent=Physo134010;rank=2 scaffold_29 . CDS 318436 319209 . + 0 ID=Physo134010;Parent=Physo134010;rank=3 scaffold_29 . repeat_region 323258 323378 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 323609 323665 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 325314 326674 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 326920 327107 . + . description=GypsyPi-1c_I-int scaffold_29 ensembl protein_coding_gene 319339 320850 . + . ID=Physo108740;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_290003;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 319339 320850 . + . ID=Physo108740;Parent=Physo108740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 319339 320850 . + 0 ID=Physo108740;Parent=Physo108740;rank=1 scaffold_29 . exon 319339 320850 . + . ID=Physo108740.1;Parent=Physo108740;constitutive=1;rank=1 scaffold_29 . exon 318065 318387 . + . ID=Physo134010.2;Parent=Physo134010;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . exon 318436 319209 . + . ID=Physo134010.3;Parent=Physo134010;constitutive=1;rank=3 scaffold_29 ensembl protein_coding_gene 325087 328247 . + . ID=Physo134012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290079;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 325087 328247 . + . ID=Physo134012;Parent=Physo134012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 325087 325410 . + 0 ID=Physo134012;Parent=Physo134012;rank=1 scaffold_29 . exon 325087 325410 . + . ID=Physo134012.1;Parent=Physo134012;constitutive=1;rank=1 scaffold_29 . CDS 325446 326026 . + 0 ID=Physo134012;Parent=Physo134012;rank=2 scaffold_29 . exon 325446 326026 . + . ID=Physo134012.2;Parent=Physo134012;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 326059 326305 . + 0 ID=Physo134012;Parent=Physo134012;rank=3 scaffold_29 . exon 326059 326305 . + . ID=Physo134012.3;Parent=Physo134012;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 326399 326506 . + 0 ID=Physo134012;Parent=Physo134012;rank=4 scaffold_29 . exon 326399 326506 . + . ID=Physo134012.4;Parent=Physo134012;constitutive=1;rank=4 scaffold_29 . CDS 326599 327654 . + 0 ID=Physo134012;Parent=Physo134012;rank=5 scaffold_29 . exon 326599 327654 . + . ID=Physo134012.5;Parent=Physo134012;constitutive=1;rank=5 scaffold_29 . CDS 327699 327750 . + 0 ID=Physo134012;Parent=Physo134012;rank=6 scaffold_29 . CDS 327819 328064 . + 0 ID=Physo134012;Parent=Physo134012;rank=7 scaffold_29 . CDS 328210 328247 . + 0 ID=Physo134012;Parent=Physo134012;rank=8 scaffold_29 . repeat_region 327824 327843 . ? . description=trf scaffold_29 . biological_region 328805 328809 0.999 + . logic_name=eponine scaffold_29 . repeat_region 329935 330001 . ? . description=trf scaffold_29 . repeat_region 331861 331900 . ? . description=trf scaffold_29 . biological_region 334120 334127 0.999 + . logic_name=eponine scaffold_29 . repeat_region 334280 334368 . ? . description=trf scaffold_29 . repeat_region 334280 334368 . ? . description=trf scaffold_29 . biological_region 334665 334667 0.999 - . logic_name=eponine scaffold_29 . biological_region 334769 334772 0.999 + . logic_name=eponine scaffold_29 . biological_region 335037 335041 0.999 + . logic_name=eponine scaffold_29 . biological_region 335069 335071 0.999 - . logic_name=eponine scaffold_29 . repeat_region 335812 335866 . ? . description=trf scaffold_29 . biological_region 335850 335854 0.999 - . logic_name=eponine scaffold_29 . biological_region 335910 335915 0.999 - . logic_name=eponine scaffold_29 . biological_region 336469 336473 0.999 - . logic_name=eponine scaffold_29 . biological_region 336903 336909 0.999 + . logic_name=eponine scaffold_29 . biological_region 336937 336941 0.999 + . logic_name=eponine scaffold_29 . biological_region 336982 336989 0.999 + . logic_name=eponine scaffold_29 . biological_region 337015 337016 0.999 - . logic_name=eponine scaffold_29 . biological_region 337029 337036 0.999 - . logic_name=eponine scaffold_29 . exon 327699 327750 . + . ID=Physo134012.6;Parent=Physo134012;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_29 . exon 327819 328064 . + . ID=Physo134012.7;Parent=Physo134012;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_29 . exon 328210 328247 . + . ID=Physo134012.8;Parent=Physo134012;constitutive=1;ensembl_phase=1;rank=8 scaffold_29 ensembl protein_coding_gene 329680 330243 . + . ID=Physo134013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290080;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 329680 330243 . + . ID=Physo134013;Parent=Physo134013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 329680 330243 . + 0 ID=Physo134013;Parent=Physo134013;rank=1 scaffold_29 . exon 329680 330243 . + . ID=Physo134013.1;Parent=Physo134013;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 335074 342190 . + . ID=Physo134014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290081;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 335074 342190 . + . ID=Physo134014;Parent=Physo134014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 335074 336036 . + 0 ID=Physo134014;Parent=Physo134014;rank=1 scaffold_29 . exon 335074 336036 . + . ID=Physo134014.1;Parent=Physo134014;constitutive=1;rank=1 scaffold_29 . CDS 336073 337319 . + 0 ID=Physo134014;Parent=Physo134014;rank=2 scaffold_29 . exon 336073 337319 . + . ID=Physo134014.2;Parent=Physo134014;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 337343 338588 . + 0 ID=Physo134014;Parent=Physo134014;rank=3 scaffold_29 . CDS 338630 339070 . + 0 ID=Physo134014;Parent=Physo134014;rank=4 scaffold_29 . CDS 339221 340109 . + 0 ID=Physo134014;Parent=Physo134014;rank=5 scaffold_29 . CDS 340255 340679 . + 0 ID=Physo134014;Parent=Physo134014;rank=6 scaffold_29 . CDS 340827 341092 . + 0 ID=Physo134014;Parent=Physo134014;rank=7 scaffold_29 . CDS 341143 342190 . + 0 ID=Physo134014;Parent=Physo134014;rank=8 scaffold_29 . repeat_region 342863 342871 . ? . description=dust scaffold_29 . repeat_region 343688 343697 . ? . description=dust scaffold_29 . exon 337343 338588 . + . ID=Physo134014.3;Parent=Physo134014;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . exon 338630 339070 . + . ID=Physo134014.4;Parent=Physo134014;constitutive=1;rank=4 scaffold_29 . exon 339221 340109 . + . ID=Physo134014.5;Parent=Physo134014;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_29 . exon 340255 340679 . + . ID=Physo134014.6;Parent=Physo134014;constitutive=1;ensembl_phase=1;rank=6 scaffold_29 . exon 340827 341092 . + . ID=Physo134014.7;Parent=Physo134014;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_29 . exon 341143 342190 . + . ID=Physo134014.8;Parent=Physo134014;constitutive=1;ensembl_phase=2;rank=8 scaffold_29 ensembl protein_coding_gene 342952 346413 . - . ID=Physo134015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290082;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 342952 346413 . - . ID=Physo134015;Parent=Physo134015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 342952 342962 . - 0 ID=Physo134015;Parent=Physo134015;rank=6 scaffold_29 . exon 342952 342962 . - . ID=Physo134015.6;Parent=Physo134015;constitutive=1;ensembl_phase=1;rank=6 scaffold_29 . CDS 343123 344244 . - 0 ID=Physo134015;Parent=Physo134015;rank=5 scaffold_29 . exon 343123 344244 . - . ID=Physo134015.5;Parent=Physo134015;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_29 . CDS 344265 344651 . - 0 ID=Physo134015;Parent=Physo134015;rank=4 scaffold_29 . exon 344265 344651 . - . ID=Physo134015.4;Parent=Physo134015;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 344686 345359 . - 0 ID=Physo134015;Parent=Physo134015;rank=3 scaffold_29 . exon 344686 345359 . - . ID=Physo134015.3;Parent=Physo134015;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 345575 345654 . - 0 ID=Physo134015;Parent=Physo134015;rank=2 scaffold_29 . exon 345575 345654 . - . ID=Physo134015.2;Parent=Physo134015;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 345694 346413 . - 0 ID=Physo134015;Parent=Physo134015;rank=1 scaffold_29 . exon 345694 346413 . - . ID=Physo134015.1;Parent=Physo134015;constitutive=1;rank=1 scaffold_29 . biological_region 347146 347146 0.999 - . logic_name=eponine scaffold_29 . biological_region 347213 347217 0.999 + . logic_name=eponine scaffold_29 . biological_region 347248 347253 0.999 + . logic_name=eponine scaffold_29 . repeat_region 347252 347363 . ? . description=trf scaffold_29 . biological_region 347277 347278 0.999 - . logic_name=eponine scaffold_29 . biological_region 347285 347288 0.999 + . logic_name=eponine scaffold_29 . biological_region 347316 347317 0.999 + . logic_name=eponine scaffold_29 . biological_region 347320 347325 0.999 - . logic_name=eponine scaffold_29 . biological_region 350850 350851 0.999 + . logic_name=eponine scaffold_29 . biological_region 350917 350922 0.999 - . logic_name=eponine scaffold_29 . biological_region 351002 351003 0.999 - . logic_name=eponine scaffold_29 . biological_region 351266 351266 0.999 + . logic_name=eponine scaffold_29 . biological_region 351306 351310 0.999 - . logic_name=eponine scaffold_29 . biological_region 351428 351434 0.999 + . logic_name=eponine scaffold_29 . repeat_region 351979 352026 . ? . description=trf scaffold_29 . biological_region 352148 352152 0.999 + . logic_name=eponine scaffold_29 . biological_region 352199 352199 0.999 - . logic_name=eponine scaffold_29 . biological_region 352240 352244 0.999 - . logic_name=eponine scaffold_29 . biological_region 352258 352263 0.999 - . logic_name=eponine scaffold_29 . biological_region 352303 352307 0.999 - . logic_name=eponine scaffold_29 . biological_region 354594 354595 0.999 + . logic_name=eponine scaffold_29 . biological_region 354602 354607 0.999 - . logic_name=eponine scaffold_29 . biological_region 355197 355202 0.999 - . logic_name=eponine scaffold_29 . biological_region 356075 356078 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 348178 348441 . + . ID=Physo115786;biotype=protein_coding;external_name=estExt_Genewise1.C_290011;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 348178 348441 . + . ID=Physo115786;Parent=Physo115786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 348178 348441 . + . ID=Physo115786.1;Parent=Physo115786;constitutive=1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 348223 348441 . + 0 ID=Physo115786;Parent=Physo115786;rank=1 scaffold_29 ensembl protein_coding_gene 351616 352449 . + . ID=Physo134017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290084;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 351616 352449 . + . ID=Physo134017;Parent=Physo134017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 351616 352305 . + 0 ID=Physo134017;Parent=Physo134017;rank=1 scaffold_29 . exon 351616 352449 . + . ID=Physo134017.1;Parent=Physo134017;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 ensembl protein_coding_gene 353601 354242 . - . ID=Physo134018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290085;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 353601 354242 . - . ID=Physo134018;Parent=Physo134018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 353601 354242 . - 0 ID=Physo134018;Parent=Physo134018;rank=1 scaffold_29 . exon 353601 354242 . - . ID=Physo134018.1;Parent=Physo134018;constitutive=1;rank=1 scaffold_29 . repeat_region 360450 360474 . ? . description=dust scaffold_29 . repeat_region 371284 371329 . ? . description=trf scaffold_29 . biological_region 375229 375230 0.999 + . logic_name=eponine scaffold_29 . repeat_region 379529 379536 . ? . description=dust scaffold_29 . repeat_region 379858 379867 . ? . description=dust scaffold_29 . repeat_region 384227 384401 . - . description=Polinton-1_PI scaffold_29 . repeat_region 384417 384487 . - . description=Polinton-1_PI scaffold_29 . repeat_region 384540 384802 . + . description=Polinton-1_PI scaffold_29 . repeat_region 384817 385015 . + . description=Polinton-1_PI scaffold_29 . repeat_region 386030 386581 . + . description=Polinton-1_PI scaffold_29 . repeat_region 386582 399031 . + . description=Polinton-1_PI scaffold_29 ensembl protein_coding_gene 384625 385993 . + . ID=Physo108741;biotype=protein_coding;description=CRN63 protein [Source:UniProtKB/TrEMBL%3BAcc:E9M7A0];external_name=CRN63;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 384625 385993 . + . ID=Physo108741;Parent=Physo108741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 384625 385993 . + . ID=Physo108741.1;Parent=Physo108741;constitutive=1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 384641 385993 . + 0 ID=Physo108741;Parent=Physo108741;rank=1 scaffold_29 ensembl protein_coding_gene 376699 378130 . + . ID=Physo134019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290086;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 376699 378130 . + . ID=Physo134019;Parent=Physo134019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 376699 378130 . + . ID=Physo134019.1;Parent=Physo134019;constitutive=1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 376709 378130 . + 0 ID=Physo134019;Parent=Physo134019;rank=1 scaffold_29 ensembl protein_coding_gene 381933 383081 . + . ID=Physo134020;biotype=protein_coding;description=PsAvh161.2 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Z5];external_name=estExt_fgenesh1_pg.C_290087;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 381933 383081 . + . ID=Physo134020;Parent=Physo134020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 381933 382195 . + 0 ID=Physo134020;Parent=Physo134020;rank=1 scaffold_29 . exon 381933 382195 . + . ID=Physo134020.1;Parent=Physo134020;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 382262 383081 . + 0 ID=Physo134020;Parent=Physo134020;rank=2 scaffold_29 . exon 382262 383081 . + . ID=Physo134020.2;Parent=Physo134020;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . repeat_region 394953 394981 . ? . description=trf scaffold_29 . repeat_region 386582 399031 . + . description=Polinton-1_PI scaffold_29 . repeat_region 399026 401267 . + . description=Polinton-1_PI scaffold_29 . repeat_region 401755 401813 . + . description=Polinton-1_PI scaffold_29 . repeat_region 401819 402003 . + . description=Polinton-1_PI scaffold_29 . repeat_region 402656 402665 . ? . description=dust scaffold_29 ensembl protein_coding_gene 402037 403498 . + . ID=Physo134022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290089;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 402037 403498 . + . ID=Physo134022;Parent=Physo134022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 402037 402620 . + 0 ID=Physo134022;Parent=Physo134022;rank=1 scaffold_29 . exon 402037 402620 . + . ID=Physo134022.1;Parent=Physo134022;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 402702 402763 . + 0 ID=Physo134022;Parent=Physo134022;rank=2 scaffold_29 . exon 402702 402763 . + . ID=Physo134022.2;Parent=Physo134022;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 402900 403498 . + 0 ID=Physo134022;Parent=Physo134022;rank=3 scaffold_29 . exon 402900 403498 . + . ID=Physo134022.3;Parent=Physo134022;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 . biological_region 410533 410534 0.999 - . logic_name=eponine scaffold_29 . biological_region 410923 410923 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 410405 411679 . + . ID=Physo134023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290090;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 410405 411679 . + . ID=Physo134023;Parent=Physo134023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 410405 411679 . + 0 ID=Physo134023;Parent=Physo134023;rank=1 scaffold_29 . exon 410405 411679 . + . ID=Physo134023.1;Parent=Physo134023;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 411804 413907 . - . ID=Physo134024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290091;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 411804 413907 . - . ID=Physo134024;Parent=Physo134024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 411804 412533 . - 0 ID=Physo134024;Parent=Physo134024;rank=6 scaffold_29 . exon 411804 412533 . - . ID=Physo134024.6;Parent=Physo134024;constitutive=1;ensembl_phase=2;rank=6 scaffold_29 . CDS 412601 412669 . - 0 ID=Physo134024;Parent=Physo134024;rank=5 scaffold_29 . exon 412601 412669 . - . ID=Physo134024.5;Parent=Physo134024;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_29 . CDS 412735 413035 . - 0 ID=Physo134024;Parent=Physo134024;rank=4 scaffold_29 . exon 412735 413035 . - . ID=Physo134024.4;Parent=Physo134024;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_29 . CDS 413079 413392 . - 0 ID=Physo134024;Parent=Physo134024;rank=3 scaffold_29 . exon 413079 413392 . - . ID=Physo134024.3;Parent=Physo134024;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 413461 413651 . - 0 ID=Physo134024;Parent=Physo134024;rank=2 scaffold_29 . exon 413461 413651 . - . ID=Physo134024.2;Parent=Physo134024;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 413716 413907 . - 0 ID=Physo134024;Parent=Physo134024;rank=1 scaffold_29 . exon 413716 413907 . - . ID=Physo134024.1;Parent=Physo134024;constitutive=1;rank=1 scaffold_29 . repeat_region 419048 419055 . ? . description=dust scaffold_29 . repeat_region 420344 420397 . ? . description=trf scaffold_29 . repeat_region 420470 420524 . ? . description=trf scaffold_29 . repeat_region 420930 420974 . ? . description=dust scaffold_29 . repeat_region 423439 423501 . ? . description=dust scaffold_29 . repeat_region 423466 423524 . ? . description=trf scaffold_29 . repeat_region 423466 423526 . ? . description=trf scaffold_29 . repeat_region 424222 424245 . ? . description=trf scaffold_29 ensembl protein_coding_gene 422670 429548 . + . ID=Physo134025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290092;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 422670 429548 . + . ID=Physo134025;Parent=Physo134025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 422670 422909 . + . ID=Physo134025.1;Parent=Physo134025;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 422675 422909 . + 0 ID=Physo134025;Parent=Physo134025;rank=1 scaffold_29 . CDS 422986 423059 . + 0 ID=Physo134025;Parent=Physo134025;rank=2 scaffold_29 . exon 422986 423059 . + . ID=Physo134025.2;Parent=Physo134025;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 423180 424012 . + 0 ID=Physo134025;Parent=Physo134025;rank=3 scaffold_29 . exon 423180 424012 . + . ID=Physo134025.3;Parent=Physo134025;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_29 . CDS 424410 425055 . + 0 ID=Physo134025;Parent=Physo134025;rank=4 scaffold_29 . exon 424410 425055 . + . ID=Physo134025.4;Parent=Physo134025;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 425127 425317 . + 0 ID=Physo134025;Parent=Physo134025;rank=5 scaffold_29 . exon 425127 425317 . + . ID=Physo134025.5;Parent=Physo134025;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_29 . CDS 425386 426054 . + 0 ID=Physo134025;Parent=Physo134025;rank=6 scaffold_29 . exon 425386 426054 . + . ID=Physo134025.6;Parent=Physo134025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_29 . CDS 426132 426919 . + 0 ID=Physo134025;Parent=Physo134025;rank=7 scaffold_29 . exon 426132 426919 . + . ID=Physo134025.7;Parent=Physo134025;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_29 . CDS 427203 427336 . + 0 ID=Physo134025;Parent=Physo134025;rank=8 scaffold_29 . CDS 427434 427844 . + 0 ID=Physo134025;Parent=Physo134025;rank=9 scaffold_29 . CDS 427912 428060 . + 0 ID=Physo134025;Parent=Physo134025;rank=10 scaffold_29 . CDS 428181 428849 . + 0 ID=Physo134025;Parent=Physo134025;rank=11 scaffold_29 . CDS 428922 428990 . + 0 ID=Physo134025;Parent=Physo134025;rank=12 scaffold_29 . CDS 429072 429318 . + 0 ID=Physo134025;Parent=Physo134025;rank=13 scaffold_29 . CDS 429522 429548 . + 0 ID=Physo134025;Parent=Physo134025;rank=14 scaffold_29 . biological_region 428387 428387 0.999 - . logic_name=eponine scaffold_29 . exon 427203 427336 . + . ID=Physo134025.8;Parent=Physo134025;constitutive=1;ensembl_phase=1;rank=8 scaffold_29 . exon 427434 427844 . + . ID=Physo134025.9;Parent=Physo134025;constitutive=1;rank=9 scaffold_29 . exon 427912 428060 . + . ID=Physo134025.10;Parent=Physo134025;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_29 . exon 428181 428849 . + . ID=Physo134025.11;Parent=Physo134025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_29 . exon 428922 428990 . + . ID=Physo134025.12;Parent=Physo134025;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_29 . exon 429072 429318 . + . ID=Physo134025.13;Parent=Physo134025;constitutive=1;ensembl_phase=2;rank=13 scaffold_29 . exon 429522 429548 . + . ID=Physo134025.14;Parent=Physo134025;constitutive=1;rank=14 scaffold_29 ensembl protein_coding_gene 430404 430796 . + . ID=Physo134026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290093;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 430404 430796 . + . ID=Physo134026;Parent=Physo134026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 430404 430796 . + 0 ID=Physo134026;Parent=Physo134026;rank=1 scaffold_29 . exon 430404 430796 . + . ID=Physo134026.1;Parent=Physo134026;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 431167 433509 . - . ID=Physo134027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290094;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 431167 433509 . - . ID=Physo134027;Parent=Physo134027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 431167 431277 . - 0 ID=Physo134027;Parent=Physo134027;rank=6 scaffold_29 . exon 431167 431277 . - . ID=Physo134027.6;Parent=Physo134027;constitutive=1;rank=6 scaffold_29 . CDS 431375 431417 . - 0 ID=Physo134027;Parent=Physo134027;rank=5 scaffold_29 . exon 431375 431417 . - . ID=Physo134027.5;Parent=Physo134027;constitutive=1;ensembl_phase=2;rank=5 scaffold_29 . CDS 431439 431666 . - 0 ID=Physo134027;Parent=Physo134027;rank=4 scaffold_29 . exon 431439 431666 . - . ID=Physo134027.4;Parent=Physo134027;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_29 . CDS 431741 431784 . - 0 ID=Physo134027;Parent=Physo134027;rank=3 scaffold_29 . exon 431741 431784 . - . ID=Physo134027.3;Parent=Physo134027;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_29 . CDS 431875 432594 . - 0 ID=Physo134027;Parent=Physo134027;rank=2 scaffold_29 . exon 431875 432594 . - . ID=Physo134027.2;Parent=Physo134027;constitutive=1;rank=2 scaffold_29 . CDS 432859 433509 . - 0 ID=Physo134027;Parent=Physo134027;rank=1 scaffold_29 . exon 432859 433509 . - . ID=Physo134027.1;Parent=Physo134027;constitutive=1;rank=1 scaffold_29 . repeat_region 439092 439141 . ? . description=dust scaffold_29 . repeat_region 440343 440392 . ? . description=dust scaffold_29 . repeat_region 442191 442420 . ? . description=dust scaffold_29 . repeat_region 445917 445947 . ? . description=dust scaffold_29 ensembl protein_coding_gene 436693 437799 . - . ID=Physo134028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290095;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 436693 437799 . - . ID=Physo134028;Parent=Physo134028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 436693 437799 . - 0 ID=Physo134028;Parent=Physo134028;rank=1 scaffold_29 . exon 436693 437799 . - . ID=Physo134028.1;Parent=Physo134028;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 442421 443134 . - . ID=Physo134029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290096;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 442421 443134 . - . ID=Physo134029;Parent=Physo134029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 442421 443134 . - 0 ID=Physo134029;Parent=Physo134029;rank=1 scaffold_29 . exon 442421 443134 . - . ID=Physo134029.1;Parent=Physo134029;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 445853 446801 . - . ID=Physo134030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290097;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 445853 446801 . - . ID=Physo134030;Parent=Physo134030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 445853 446801 . - . ID=Physo134030.1;Parent=Physo134030;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 . CDS 446010 446801 . - 0 ID=Physo134030;Parent=Physo134030;rank=1 scaffold_29 . biological_region 446241 446245 0.999 + . logic_name=eponine scaffold_29 . biological_region 446777 446781 0.999 - . logic_name=eponine scaffold_29 . biological_region 446953 446957 0.999 - . logic_name=eponine scaffold_29 . biological_region 448503 448503 0.999 + . logic_name=eponine scaffold_29 . repeat_region 448597 448622 . ? . description=trf scaffold_29 . biological_region 452828 452832 0.999 - . logic_name=eponine scaffold_29 . biological_region 455377 455380 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 454170 456509 . + . ID=Physo134031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290098;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 454170 456509 . + . ID=Physo134031;Parent=Physo134031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 454170 456509 . + 0 ID=Physo134031;Parent=Physo134031;rank=1 scaffold_29 . exon 454170 456509 . + . ID=Physo134031.1;Parent=Physo134031;constitutive=1;rank=1 scaffold_29 . repeat_region 459599 459632 . ? . description=dust scaffold_29 . repeat_region 459835 459867 . ? . description=dust scaffold_29 . repeat_region 460312 460363 . ? . description=dust scaffold_29 . repeat_region 465160 465188 . ? . description=dust scaffold_29 ensembl protein_coding_gene 456610 458899 . - . ID=Physo134032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290099;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 456610 458899 . - . ID=Physo134032;Parent=Physo134032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 456610 457083 . - 0 ID=Physo134032;Parent=Physo134032;rank=4 scaffold_29 . exon 456610 457083 . - . ID=Physo134032.4;Parent=Physo134032;constitutive=1;rank=4 scaffold_29 . CDS 457122 457700 . - 0 ID=Physo134032;Parent=Physo134032;rank=3 scaffold_29 . exon 457122 457700 . - . ID=Physo134032.3;Parent=Physo134032;constitutive=1;rank=3 scaffold_29 . CDS 457790 458477 . - 0 ID=Physo134032;Parent=Physo134032;rank=2 scaffold_29 . exon 457790 458477 . - . ID=Physo134032.2;Parent=Physo134032;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 458523 458899 . - 0 ID=Physo134032;Parent=Physo134032;rank=1 scaffold_29 . exon 458523 458899 . - . ID=Physo134032.1;Parent=Physo134032;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 ensembl protein_coding_gene 459570 467570 . + . ID=Physo134033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290100;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 459570 467570 . + . ID=Physo134033;Parent=Physo134033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 459570 467570 . + 0 ID=Physo134033;Parent=Physo134033;rank=1 scaffold_29 . exon 459570 467570 . + . ID=Physo134033.1;Parent=Physo134033;constitutive=1;rank=1 scaffold_29 . repeat_region 466563 466768 . ? . description=trf scaffold_29 . repeat_region 466572 466748 . ? . description=trf scaffold_29 . repeat_region 468400 468440 . ? . description=trf scaffold_29 . biological_region 468748 468753 0.999 + . logic_name=eponine scaffold_29 . biological_region 472123 472125 0.999 + . logic_name=eponine scaffold_29 . repeat_region 473314 473338 . ? . description=trf scaffold_29 . biological_region 475323 475326 0.999 + . logic_name=eponine scaffold_29 . repeat_region 481537 483943 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 482702 482751 . ? . description=dust scaffold_29 ensembl protein_coding_gene 480249 487159 . + . ID=Physo134034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290101;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 480249 487159 . + . ID=Physo134034;Parent=Physo134034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 480249 480717 . + 0 ID=Physo134034;Parent=Physo134034;rank=1 scaffold_29 . exon 480249 480717 . + . ID=Physo134034.1;Parent=Physo134034;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 480951 482694 . + 0 ID=Physo134034;Parent=Physo134034;rank=2 scaffold_29 . exon 480951 482694 . + . ID=Physo134034.2;Parent=Physo134034;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 482895 484270 . + 0 ID=Physo134034;Parent=Physo134034;rank=3 scaffold_29 . exon 482895 484270 . + . ID=Physo134034.3;Parent=Physo134034;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 484346 484398 . + 0 ID=Physo134034;Parent=Physo134034;rank=4 scaffold_29 . exon 484346 484398 . + . ID=Physo134034.4;Parent=Physo134034;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 484658 484744 . + 0 ID=Physo134034;Parent=Physo134034;rank=5 scaffold_29 . exon 484658 484744 . + . ID=Physo134034.5;Parent=Physo134034;constitutive=1;rank=5 scaffold_29 . CDS 485416 485555 . + 0 ID=Physo134034;Parent=Physo134034;rank=6 scaffold_29 . exon 485416 485555 . + . ID=Physo134034.6;Parent=Physo134034;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_29 . CDS 485597 485683 . + 0 ID=Physo134034;Parent=Physo134034;rank=7 scaffold_29 . exon 485597 485683 . + . ID=Physo134034.7;Parent=Physo134034;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_29 . CDS 486822 486852 . + 0 ID=Physo134034;Parent=Physo134034;rank=8 scaffold_29 . repeat_region 490158 490204 . ? . description=trf scaffold_29 . repeat_region 490158 490205 . ? . description=trf scaffold_29 . repeat_region 490176 490234 . ? . description=trf scaffold_29 . biological_region 491436 491436 0.999 + . logic_name=eponine scaffold_29 . biological_region 491545 491546 0.999 - . logic_name=eponine scaffold_29 . biological_region 493050 493053 0.999 + . logic_name=eponine scaffold_29 . exon 486822 487159 . + . ID=Physo134034.8;Parent=Physo134034;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=8 scaffold_29 ensembl protein_coding_gene 491058 494588 . + . ID=Physo134036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290103;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 491058 494588 . + . ID=Physo134036;Parent=Physo134036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 491058 491076 . + 0 ID=Physo134036;Parent=Physo134036;rank=1 scaffold_29 . exon 491058 491076 . + . ID=Physo134036.1;Parent=Physo134036;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 491444 491867 . + 0 ID=Physo134036;Parent=Physo134036;rank=2 scaffold_29 . exon 491444 491867 . + . ID=Physo134036.2;Parent=Physo134036;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 492014 492216 . + 0 ID=Physo134036;Parent=Physo134036;rank=3 scaffold_29 . exon 492014 492216 . + . ID=Physo134036.3;Parent=Physo134036;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 492241 493388 . + 0 ID=Physo134036;Parent=Physo134036;rank=4 scaffold_29 . exon 492241 493388 . + . ID=Physo134036.4;Parent=Physo134036;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 493455 494588 . + 0 ID=Physo134036;Parent=Physo134036;rank=5 scaffold_29 . exon 493455 494588 . + . ID=Physo134036.5;Parent=Physo134036;constitutive=1;rank=5 scaffold_29 ensembl protein_coding_gene 494875 499871 . - . ID=Physo134037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290104;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 494875 499871 . - . ID=Physo134037;Parent=Physo134037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 494875 495577 . - 0 ID=Physo134037;Parent=Physo134037;rank=9 scaffold_29 . exon 494875 495577 . - . ID=Physo134037.9;Parent=Physo134037;constitutive=1;ensembl_phase=2;rank=9 scaffold_29 . CDS 495737 495948 . - 0 ID=Physo134037;Parent=Physo134037;rank=8 scaffold_29 . CDS 496242 496298 . - 0 ID=Physo134037;Parent=Physo134037;rank=7 scaffold_29 . CDS 496378 497139 . - 0 ID=Physo134037;Parent=Physo134037;rank=6 scaffold_29 . CDS 497248 497367 . - 0 ID=Physo134037;Parent=Physo134037;rank=5 scaffold_29 . CDS 497608 498917 . - 0 ID=Physo134037;Parent=Physo134037;rank=4 scaffold_29 . CDS 499151 499481 . - 0 ID=Physo134037;Parent=Physo134037;rank=3 scaffold_29 . CDS 499554 499765 . - 0 ID=Physo134037;Parent=Physo134037;rank=2 scaffold_29 . CDS 499814 499871 . - 0 ID=Physo134037;Parent=Physo134037;rank=1 scaffold_29 . repeat_region 505449 505502 . ? . description=dust scaffold_29 . exon 495737 495948 . - . ID=Physo134037.8;Parent=Physo134037;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_29 . exon 496242 496298 . - . ID=Physo134037.7;Parent=Physo134037;constitutive=1;rank=7 scaffold_29 . exon 496378 497139 . - . ID=Physo134037.6;Parent=Physo134037;constitutive=1;rank=6 scaffold_29 . exon 497248 497367 . - . ID=Physo134037.5;Parent=Physo134037;constitutive=1;rank=5 scaffold_29 . exon 497608 498917 . - . ID=Physo134037.4;Parent=Physo134037;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . exon 499151 499481 . - . ID=Physo134037.3;Parent=Physo134037;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_29 . exon 499554 499765 . - . ID=Physo134037.2;Parent=Physo134037;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . exon 499814 499871 . - . ID=Physo134037.1;Parent=Physo134037;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 501180 504478 . - . ID=Physo134038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290105;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 501180 504478 . - . ID=Physo134038;Parent=Physo134038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 501180 501430 . - 0 ID=Physo134038;Parent=Physo134038;rank=5 scaffold_29 . exon 501180 501430 . - . ID=Physo134038.5;Parent=Physo134038;constitutive=1;ensembl_phase=1;rank=5 scaffold_29 . CDS 501457 501876 . - 0 ID=Physo134038;Parent=Physo134038;rank=4 scaffold_29 . exon 501457 501876 . - . ID=Physo134038.4;Parent=Physo134038;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 501985 502704 . - 0 ID=Physo134038;Parent=Physo134038;rank=3 scaffold_29 . exon 501985 502704 . - . ID=Physo134038.3;Parent=Physo134038;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 503298 503412 . - 0 ID=Physo134038;Parent=Physo134038;rank=2 scaffold_29 . exon 503298 503412 . - . ID=Physo134038.2;Parent=Physo134038;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_29 . CDS 503855 504478 . - 0 ID=Physo134038;Parent=Physo134038;rank=1 scaffold_29 . exon 503855 504478 . - . ID=Physo134038.1;Parent=Physo134038;constitutive=1;rank=1 scaffold_29 . repeat_region 512619 513177 . + . description=GypsyPi-1c_I-int scaffold_29 . biological_region 513566 513571 0.999 - . logic_name=eponine scaffold_29 . repeat_region 513940 514030 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 514111 514279 . + . description=GypsyPi-1c_LTR scaffold_29 . repeat_region 515998 516015 . ? . description=dust scaffold_29 . repeat_region 518284 518320 . ? . description=trf scaffold_29 . repeat_region 519091 519195 . ? . description=trf scaffold_29 . repeat_region 523255 523267 . ? . description=dust scaffold_29 . repeat_region 523905 523913 . ? . description=dust scaffold_29 ensembl protein_coding_gene 518013 518693 . - . ID=Physo134039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290106;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 518013 518693 . - . ID=Physo134039;Parent=Physo134039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 518013 518509 . - 0 ID=Physo134039;Parent=Physo134039;rank=2 scaffold_29 . exon 518013 518509 . - . ID=Physo134039.2;Parent=Physo134039;constitutive=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 518633 518693 . - 0 ID=Physo134039;Parent=Physo134039;rank=1 scaffold_29 . exon 518633 518693 . - . ID=Physo134039.1;Parent=Physo134039;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . biological_region 525543 525546 0.999 - . logic_name=eponine scaffold_29 . biological_region 525610 525616 0.999 - . logic_name=eponine scaffold_29 . biological_region 528262 528266 0.999 - . logic_name=eponine scaffold_29 . repeat_region 532052 532586 . - . description=Gypsy-2-I_PI-int scaffold_29 . repeat_region 532769 534153 . - . description=Gypsy-2-I_PI-int scaffold_29 ensembl protein_coding_gene 529813 531150 . + . ID=Physo134040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290107;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 529813 531150 . + . ID=Physo134040;Parent=Physo134040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 529813 531150 . + 0 ID=Physo134040;Parent=Physo134040;rank=1 scaffold_29 . exon 529813 531150 . + . ID=Physo134040.1;Parent=Physo134040;constitutive=1;rank=1 scaffold_29 . repeat_region 535616 535623 . ? . description=dust scaffold_29 . repeat_region 535831 535880 . ? . description=trf scaffold_29 . repeat_region 536626 536666 . ? . description=trf scaffold_29 . repeat_region 540612 540669 . ? . description=trf scaffold_29 ensembl protein_coding_gene 536216 537073 . + . ID=Physo134041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290108;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 536216 537073 . + . ID=Physo134041;Parent=Physo134041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 536216 537073 . + 0 ID=Physo134041;Parent=Physo134041;rank=1 scaffold_29 . exon 536216 537073 . + . ID=Physo134041.1;Parent=Physo134041;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 544807 545223 . - . ID=Physo134042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290109;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 544807 545223 . - . ID=Physo134042;Parent=Physo134042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 544807 545223 . - 0 ID=Physo134042;Parent=Physo134042;rank=1 scaffold_29 . exon 544807 545223 . - . ID=Physo134042.1;Parent=Physo134042;constitutive=1;rank=1 scaffold_29 . repeat_region 555044 555345 . + . description=GypsyPi-1c_LTR scaffold_29 . repeat_region 555346 557475 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 556757 556806 . ? . description=trf scaffold_29 . repeat_region 556763 556813 . ? . description=trf scaffold_29 . repeat_region 557310 557545 . ? . description=trf scaffold_29 . repeat_region 557371 557546 . ? . description=trf scaffold_29 . repeat_region 557454 557566 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 558409 558495 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 558816 558865 . ? . description=dust scaffold_29 . repeat_region 558983 559236 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 559071 559306 . ? . description=trf scaffold_29 . repeat_region 559132 559307 . ? . description=trf scaffold_29 . repeat_region 559215 559327 . + . description=GypsyPi-1c_I-int scaffold_29 . repeat_region 559919 560476 . ? . description=dust scaffold_29 . repeat_region 560729 560784 . ? . description=trf scaffold_29 . repeat_region 562588 565003 . ? . description=dust scaffold_29 . repeat_region 565004 579421 . ? . description=dust scaffold_29 ensembl protein_coding_gene 555433 556395 . + . ID=Physo134043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290110;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 555433 556395 . + . ID=Physo134043;Parent=Physo134043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 555433 556395 . + 0 ID=Physo134043;Parent=Physo134043;rank=1 scaffold_29 . exon 555433 556395 . + . ID=Physo134043.1;Parent=Physo134043;constitutive=1;rank=1 scaffold_29 . repeat_region 565004 579421 . ? . description=dust scaffold_29 . repeat_region 583391 583440 . ? . description=dust scaffold_29 ensembl protein_coding_gene 579661 584026 . - . ID=Physo134044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290111;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 579661 584026 . - . ID=Physo134044;Parent=Physo134044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 579661 579720 . - 0 ID=Physo134044;Parent=Physo134044;rank=3 scaffold_29 . exon 579661 579720 . - . ID=Physo134044.3;Parent=Physo134044;constitutive=1;rank=3 scaffold_29 . CDS 579750 583325 . - 0 ID=Physo134044;Parent=Physo134044;rank=2 scaffold_29 . exon 579750 583325 . - . ID=Physo134044.2;Parent=Physo134044;constitutive=1;rank=2 scaffold_29 . CDS 583784 584026 . - 0 ID=Physo134044;Parent=Physo134044;rank=1 scaffold_29 . exon 583784 584026 . - . ID=Physo134044.1;Parent=Physo134044;constitutive=1;rank=1 scaffold_29 . biological_region 585062 585065 0.999 - . logic_name=eponine scaffold_29 . biological_region 585251 585253 0.999 - . logic_name=eponine scaffold_29 . biological_region 591211 591215 0.999 + . logic_name=eponine scaffold_29 . biological_region 591302 591306 0.999 + . logic_name=eponine scaffold_29 . biological_region 591981 591983 0.999 + . logic_name=eponine scaffold_29 . repeat_region 592026 592072 . ? . description=trf scaffold_29 . biological_region 592070 592073 0.999 - . logic_name=eponine scaffold_29 . biological_region 592085 592087 0.999 - . logic_name=eponine scaffold_29 . biological_region 592101 592105 0.999 - . logic_name=eponine scaffold_29 . biological_region 592116 592119 0.999 - . logic_name=eponine scaffold_29 . repeat_region 594044 594090 . ? . description=trf scaffold_29 . repeat_region 594185 594287 . ? . description=trf scaffold_29 ensembl protein_coding_gene 592840 593588 . - . ID=Physo108742;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_290005;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 592840 593588 . - . ID=Physo108742;Parent=Physo108742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 592840 593588 . - . ID=Physo108742.1;Parent=Physo108742;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 592933 593559 . - 0 ID=Physo108742;Parent=Physo108742;rank=1 scaffold_29 ensembl protein_coding_gene 584915 592156 . - . ID=Physo134045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290112;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 584915 592156 . - . ID=Physo134045;Parent=Physo134045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 584915 592156 . - 0 ID=Physo134045;Parent=Physo134045;rank=1 scaffold_29 . exon 584915 592156 . - . ID=Physo134045.1;Parent=Physo134045;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 593852 595349 . + . ID=Physo134047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290114;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 593852 595349 . + . ID=Physo134047;Parent=Physo134047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 593852 594719 . + 0 ID=Physo134047;Parent=Physo134047;rank=1 scaffold_29 . exon 593852 594719 . + . ID=Physo134047.1;Parent=Physo134047;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 . CDS 594788 595230 . + 0 ID=Physo134047;Parent=Physo134047;rank=2 scaffold_29 . repeat_region 603466 603483 . ? . description=dust scaffold_29 . exon 594788 595349 . + . ID=Physo134047.2;Parent=Physo134047;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_29 ensembl protein_coding_gene 595990 596877 . - . ID=Physo134048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290115;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 595990 596877 . - . ID=Physo134048;Parent=Physo134048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 595990 596877 . - 0 ID=Physo134048;Parent=Physo134048;rank=1 scaffold_29 . exon 595990 596877 . - . ID=Physo134048.1;Parent=Physo134048;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 597951 598835 . - . ID=Physo134049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290116;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 597951 598835 . - . ID=Physo134049;Parent=Physo134049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 597951 598835 . - 0 ID=Physo134049;Parent=Physo134049;rank=1 scaffold_29 . exon 597951 598835 . - . ID=Physo134049.1;Parent=Physo134049;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 600312 601148 . - . ID=Physo134050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290117;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 600312 601148 . - . ID=Physo134050;Parent=Physo134050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 600312 601148 . - 0 ID=Physo134050;Parent=Physo134050;rank=1 scaffold_29 . exon 600312 601148 . - . ID=Physo134050.1;Parent=Physo134050;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 602786 603277 . + . ID=Physo134051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290118;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 602786 603277 . + . ID=Physo134051;Parent=Physo134051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 602786 603277 . + . ID=Physo134051.1;Parent=Physo134051;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 602787 603275 . + 0 ID=Physo134051;Parent=Physo134051;rank=1 scaffold_29 ensembl protein_coding_gene 603679 605028 . + . ID=Physo134052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290119;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 603679 605028 . + . ID=Physo134052;Parent=Physo134052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 603679 605028 . + 0 ID=Physo134052;Parent=Physo134052;rank=1 scaffold_29 . exon 603679 605028 . + . ID=Physo134052.1;Parent=Physo134052;constitutive=1;rank=1 scaffold_29 . repeat_region 606940 606971 . ? . description=trf scaffold_29 . biological_region 613637 613642 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 606523 608064 . - . ID=Physo134053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290120;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 606523 608064 . - . ID=Physo134053;Parent=Physo134053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 606523 607321 . - 0 ID=Physo134053;Parent=Physo134053;rank=3 scaffold_29 . exon 606523 607321 . - . ID=Physo134053.3;Parent=Physo134053;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 607423 607430 . - 0 ID=Physo134053;Parent=Physo134053;rank=2 scaffold_29 . exon 607423 607430 . - . ID=Physo134053.2;Parent=Physo134053;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 607657 608064 . - 0 ID=Physo134053;Parent=Physo134053;rank=1 scaffold_29 . exon 607657 608064 . - . ID=Physo134053.1;Parent=Physo134053;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 614270 615646 . - . ID=Physo134054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290121;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 614270 615646 . - . ID=Physo134054;Parent=Physo134054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 614270 615646 . - 0 ID=Physo134054;Parent=Physo134054;rank=1 scaffold_29 . exon 614270 615646 . - . ID=Physo134054.1;Parent=Physo134054;constitutive=1;rank=1 scaffold_29 . repeat_region 620120 620143 . ? . description=dust scaffold_29 ensembl protein_coding_gene 616258 616668 . + . ID=Physo134055;biotype=protein_coding;description=Elicitin-like protein SOL11C [Source:UniProtKB/TrEMBL%3BAcc:Q2N075];external_name=estExt_fgenesh1_pg.C_290122;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 616258 616668 . + . ID=Physo134055;Parent=Physo134055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 616258 616668 . + 0 ID=Physo134055;Parent=Physo134055;rank=1 scaffold_29 . exon 616258 616668 . + . ID=Physo134055.1;Parent=Physo134055;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 620100 621358 . + . ID=Physo134056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290123;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 620100 621358 . + . ID=Physo134056;Parent=Physo134056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 620100 620470 . + 0 ID=Physo134056;Parent=Physo134056;rank=1 scaffold_29 . exon 620100 620470 . + . ID=Physo134056.1;Parent=Physo134056;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 620638 620951 . + 0 ID=Physo134056;Parent=Physo134056;rank=2 scaffold_29 . exon 620638 620951 . + . ID=Physo134056.2;Parent=Physo134056;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 621015 621358 . + 0 ID=Physo134056;Parent=Physo134056;rank=3 scaffold_29 . exon 621015 621358 . + . ID=Physo134056.3;Parent=Physo134056;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 ensembl protein_coding_gene 622620 624929 . - . ID=Physo134057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290124;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 622620 624929 . - . ID=Physo134057;Parent=Physo134057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 622620 623005 . - . ID=Physo134057.2;Parent=Physo134057;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_29 . exon 623113 624929 . - . ID=Physo134057.1;Parent=Physo134057;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 . CDS 623271 624929 . - 0 ID=Physo134057;Parent=Physo134057;rank=1 scaffold_29 . biological_region 624533 624539 0.999 + . logic_name=eponine scaffold_29 . repeat_region 625494 625518 . ? . description=trf scaffold_29 . biological_region 625640 625642 0.999 + . logic_name=eponine scaffold_29 . biological_region 625657 625664 0.999 + . logic_name=eponine scaffold_29 . biological_region 625677 625681 0.999 - . logic_name=eponine scaffold_29 . biological_region 625685 625693 0.999 - . logic_name=eponine scaffold_29 . biological_region 625706 625711 0.999 - . logic_name=eponine scaffold_29 . biological_region 625730 625735 0.999 - . logic_name=eponine scaffold_29 . biological_region 625796 625796 0.999 - . logic_name=eponine scaffold_29 ensembl protein_coding_gene 625519 626001 . + . ID=Physo108743;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_290006;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 625519 626001 . + . ID=Physo108743;Parent=Physo108743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 625519 625956 . + 0 ID=Physo108743;Parent=Physo108743;rank=1 scaffold_29 . exon 625519 626001 . + . ID=Physo108743.1;Parent=Physo108743;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 ensembl protein_coding_gene 626106 627799 . + . ID=Physo134059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290126;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 626106 627799 . + . ID=Physo134059;Parent=Physo134059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 626106 627191 . + 0 ID=Physo134059;Parent=Physo134059;rank=1 scaffold_29 . exon 626106 627191 . + . ID=Physo134059.1;Parent=Physo134059;constitutive=1;rank=1 scaffold_29 . CDS 627518 627799 . + 0 ID=Physo134059;Parent=Physo134059;rank=2 scaffold_29 . exon 627518 627799 . + . ID=Physo134059.2;Parent=Physo134059;constitutive=1;rank=2 scaffold_29 ensembl protein_coding_gene 628262 628909 . + . ID=Physo134060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290127;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 628262 628909 . + . ID=Physo134060;Parent=Physo134060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 628262 628317 . + 0 ID=Physo134060;Parent=Physo134060;rank=1 scaffold_29 . exon 628262 628317 . + . ID=Physo134060.1;Parent=Physo134060;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 628384 628909 . + 0 ID=Physo134060;Parent=Physo134060;rank=2 scaffold_29 . exon 628384 628909 . + . ID=Physo134060.2;Parent=Physo134060;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 ensembl protein_coding_gene 630663 632884 . + . ID=Physo134061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290128;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 630663 632884 . + . ID=Physo134061;Parent=Physo134061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 630663 630923 . + 0 ID=Physo134061;Parent=Physo134061;rank=1 scaffold_29 . exon 630663 630923 . + . ID=Physo134061.1;Parent=Physo134061;constitutive=1;rank=1 scaffold_29 . CDS 630999 631189 . + 0 ID=Physo134061;Parent=Physo134061;rank=2 scaffold_29 . exon 630999 631189 . + . ID=Physo134061.2;Parent=Physo134061;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 631273 631678 . + 0 ID=Physo134061;Parent=Physo134061;rank=3 scaffold_29 . exon 631273 631678 . + . ID=Physo134061.3;Parent=Physo134061;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 631698 631942 . + 0 ID=Physo134061;Parent=Physo134061;rank=4 scaffold_29 . exon 631698 631942 . + . ID=Physo134061.4;Parent=Physo134061;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_29 . CDS 632004 632072 . + 0 ID=Physo134061;Parent=Physo134061;rank=5 scaffold_29 . exon 632004 632072 . + . ID=Physo134061.5;Parent=Physo134061;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_29 . CDS 632130 632595 . + 0 ID=Physo134061;Parent=Physo134061;rank=6 scaffold_29 . exon 632130 632595 . + . ID=Physo134061.6;Parent=Physo134061;constitutive=1;ensembl_phase=2;rank=6 scaffold_29 . CDS 632662 632842 . + 0 ID=Physo134061;Parent=Physo134061;rank=7 scaffold_29 . exon 632662 632842 . + . ID=Physo134061.7;Parent=Physo134061;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_29 . CDS 632862 632884 . + 0 ID=Physo134061;Parent=Physo134061;rank=8 scaffold_29 . exon 632862 632884 . + . ID=Physo134061.8;Parent=Physo134061;constitutive=1;ensembl_phase=1;rank=8 scaffold_29 . repeat_region 637615 637623 . ? . description=dust scaffold_29 ensembl protein_coding_gene 636930 637535 . - . ID=Physo108744;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_290007;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 636930 637535 . - . ID=Physo108744;Parent=Physo108744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 636930 637535 . - . ID=Physo108744.1;Parent=Physo108744;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 636931 637533 . - 0 ID=Physo108744;Parent=Physo108744;rank=1 scaffold_29 ensembl pseudogene 640819 641541 . + . ID=Physo108745;biotype=pseudogene;external_name=estExt_fgenesh1_pm.C_290008;logic_name=jgi_physo1_1 scaffold_29 ensembl pseudogene 640819 641541 . + . ID=Physo108745;Parent=Physo108745;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_29 . exon 640819 641541 . + . ID=Physo108745.1;Parent=Physo108745;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_29 ensembl protein_coding_gene 641834 642287 . - . ID=Physo115842;biotype=protein_coding;external_name=estExt_Genewise1.C_290067;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 641834 642287 . - . ID=Physo115842;Parent=Physo115842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 641834 642287 . - . ID=Physo115842.1;Parent=Physo115842;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 . CDS 641898 642287 . - 0 ID=Physo115842;Parent=Physo115842;rank=1 scaffold_29 ensembl protein_coding_gene 642740 644152 . - . ID=Physo134065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290132;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 642740 644152 . - . ID=Physo134065;Parent=Physo134065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 642740 644152 . - 0 ID=Physo134065;Parent=Physo134065;rank=1 scaffold_29 . exon 642740 644152 . - . ID=Physo134065.1;Parent=Physo134065;constitutive=1;rank=1 scaffold_29 . biological_region 647015 647017 0.999 - . logic_name=eponine scaffold_29 . biological_region 650203 650208 0.999 + . logic_name=eponine scaffold_29 . biological_region 650443 650445 0.999 - . logic_name=eponine scaffold_29 . biological_region 650598 650604 0.999 - . logic_name=eponine scaffold_29 . biological_region 650854 650857 0.999 + . logic_name=eponine scaffold_29 . biological_region 650886 650890 0.999 + . logic_name=eponine scaffold_29 . biological_region 651487 651492 0.999 + . logic_name=eponine scaffold_29 ensembl protein_coding_gene 645039 645771 . - . ID=Physo115846;biotype=protein_coding;external_name=estExt_Genewise1.C_290071;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 645039 645771 . - . ID=Physo115846;Parent=Physo115846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 645039 645771 . - . ID=Physo115846.1;Parent=Physo115846;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_29 . CDS 645108 645770 . - 0 ID=Physo115846;Parent=Physo115846;rank=1 scaffold_29 ensembl protein_coding_gene 646086 646576 . + . ID=Physo115852;biotype=protein_coding;external_name=estExt_Genewise1.C_290077;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 646086 646576 . + . ID=Physo115852;Parent=Physo115852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 646086 646475 . + 0 ID=Physo115852;Parent=Physo115852;rank=1 scaffold_29 . exon 646086 646576 . + . ID=Physo115852.1;Parent=Physo115852;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_29 ensembl protein_coding_gene 646689 648416 . + . ID=Physo134068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290135;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 646689 648416 . + . ID=Physo134068;Parent=Physo134068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 646689 647030 . + 0 ID=Physo134068;Parent=Physo134068;rank=1 scaffold_29 . exon 646689 647030 . + . ID=Physo134068.1;Parent=Physo134068;constitutive=1;rank=1 scaffold_29 . CDS 647131 647205 . + 0 ID=Physo134068;Parent=Physo134068;rank=2 scaffold_29 . exon 647131 647205 . + . ID=Physo134068.2;Parent=Physo134068;constitutive=1;rank=2 scaffold_29 . CDS 647277 648416 . + 0 ID=Physo134068;Parent=Physo134068;rank=3 scaffold_29 . exon 647277 648416 . + . ID=Physo134068.3;Parent=Physo134068;constitutive=1;rank=3 scaffold_29 ensembl protein_coding_gene 648444 650315 . - . ID=Physo134069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290136;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 648444 650315 . - . ID=Physo134069;Parent=Physo134069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 648444 648716 . - . ID=Physo134069.4;Parent=Physo134069;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_29 . CDS 648577 648716 . - 0 ID=Physo134069;Parent=Physo134069;rank=4 scaffold_29 . CDS 648794 648835 . - 0 ID=Physo134069;Parent=Physo134069;rank=3 scaffold_29 . exon 648794 648835 . - . ID=Physo134069.3;Parent=Physo134069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 648915 650063 . - 0 ID=Physo134069;Parent=Physo134069;rank=2 scaffold_29 . exon 648915 650063 . - . ID=Physo134069.2;Parent=Physo134069;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 650141 650315 . - 0 ID=Physo134069;Parent=Physo134069;rank=1 scaffold_29 . exon 650141 650315 . - . ID=Physo134069.1;Parent=Physo134069;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 654237 655055 . - . ID=Physo134070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290137;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 654237 655055 . - . ID=Physo134070;Parent=Physo134070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 654237 654512 . - 0 ID=Physo134070;Parent=Physo134070;rank=2 scaffold_29 . exon 654237 654512 . - . ID=Physo134070.2;Parent=Physo134070;constitutive=1;rank=2 scaffold_29 . CDS 654591 655055 . - 0 ID=Physo134070;Parent=Physo134070;rank=1 scaffold_29 ensembl protein_coding_gene 659759 660236 . - . ID=Physo108749;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_290012;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 659759 660236 . - . ID=Physo108749;Parent=Physo108749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 659759 659798 . - 0 ID=Physo108749;Parent=Physo108749;rank=2 scaffold_29 . exon 659759 659798 . - . ID=Physo108749.2;Parent=Physo108749;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 659848 660236 . - 0 ID=Physo108749;Parent=Physo108749;rank=1 scaffold_29 . exon 659848 660236 . - . ID=Physo108749.1;Parent=Physo108749;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . exon 654591 655055 . - . ID=Physo134070.1;Parent=Physo134070;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 655647 657077 . + . ID=Physo134071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290138;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 655647 657077 . + . ID=Physo134071;Parent=Physo134071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 655647 656747 . + 0 ID=Physo134071;Parent=Physo134071;rank=1 scaffold_29 . exon 655647 656747 . + . ID=Physo134071.1;Parent=Physo134071;constitutive=1;rank=1 scaffold_29 . CDS 656784 657077 . + 0 ID=Physo134071;Parent=Physo134071;rank=2 scaffold_29 . exon 656784 657077 . + . ID=Physo134071.2;Parent=Physo134071;constitutive=1;rank=2 scaffold_29 ensembl protein_coding_gene 657269 659627 . - . ID=Physo134072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290139;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 657269 659627 . - . ID=Physo134072;Parent=Physo134072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 657269 657620 . - 0 ID=Physo134072;Parent=Physo134072;rank=5 scaffold_29 . exon 657269 657620 . - . ID=Physo134072.5;Parent=Physo134072;constitutive=1;ensembl_phase=2;rank=5 scaffold_29 . CDS 657681 658452 . - 0 ID=Physo134072;Parent=Physo134072;rank=4 scaffold_29 . exon 657681 658452 . - . ID=Physo134072.4;Parent=Physo134072;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_29 . CDS 658658 659139 . - 0 ID=Physo134072;Parent=Physo134072;rank=3 scaffold_29 . exon 658658 659139 . - . ID=Physo134072.3;Parent=Physo134072;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 659371 659419 . - 0 ID=Physo134072;Parent=Physo134072;rank=2 scaffold_29 . exon 659371 659419 . - . ID=Physo134072.2;Parent=Physo134072;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_29 . CDS 659474 659627 . - 0 ID=Physo134072;Parent=Physo134072;rank=1 scaffold_29 . exon 659474 659627 . - . ID=Physo134072.1;Parent=Physo134072;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 660358 665561 . - . ID=Physo134074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290141;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 660358 665561 . - . ID=Physo134074;Parent=Physo134074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . exon 660358 660587 . - . ID=Physo134074.8;Parent=Physo134074;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_29 . CDS 660360 660587 . - 0 ID=Physo134074;Parent=Physo134074;rank=8 scaffold_29 . CDS 660616 661075 . - 0 ID=Physo134074;Parent=Physo134074;rank=7 scaffold_29 . exon 660616 661075 . - . ID=Physo134074.7;Parent=Physo134074;constitutive=1;ensembl_phase=2;rank=7 scaffold_29 . CDS 661108 662544 . - 0 ID=Physo134074;Parent=Physo134074;rank=6 scaffold_29 . exon 661108 662544 . - . ID=Physo134074.6;Parent=Physo134074;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_29 . CDS 662727 663541 . - 0 ID=Physo134074;Parent=Physo134074;rank=5 scaffold_29 . exon 662727 663541 . - . ID=Physo134074.5;Parent=Physo134074;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_29 . CDS 663982 664423 . - 0 ID=Physo134074;Parent=Physo134074;rank=4 scaffold_29 . exon 663982 664423 . - . ID=Physo134074.4;Parent=Physo134074;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 664461 665046 . - 0 ID=Physo134074;Parent=Physo134074;rank=3 scaffold_29 . CDS 665079 665307 . - 0 ID=Physo134074;Parent=Physo134074;rank=2 scaffold_29 . CDS 665337 665561 . - 0 ID=Physo134074;Parent=Physo134074;rank=1 scaffold_29 . repeat_region 665275 665333 . ? . description=trf scaffold_29 . biological_region 665551 665556 0.999 + . logic_name=eponine scaffold_29 . repeat_region 665599 665633 . ? . description=trf scaffold_29 . biological_region 665653 665658 0.999 - . logic_name=eponine scaffold_29 . repeat_region 665755 665805 . ? . description=trf scaffold_29 . repeat_region 666356 666363 . ? . description=dust scaffold_29 . repeat_region 666915 666938 . ? . description=dust scaffold_29 . repeat_region 667644 667651 . ? . description=dust scaffold_29 . repeat_region 670845 670860 . ? . description=dust scaffold_29 . biological_region 672421 672425 0.999 - . logic_name=eponine scaffold_29 . biological_region 673690 673697 0.999 - . logic_name=eponine scaffold_29 . biological_region 673733 673733 0.999 - . logic_name=eponine scaffold_29 . biological_region 673747 673750 0.999 + . logic_name=eponine scaffold_29 . exon 664461 665046 . - . ID=Physo134074.3;Parent=Physo134074;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_29 . exon 665079 665307 . - . ID=Physo134074.2;Parent=Physo134074;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_29 . exon 665337 665561 . - . ID=Physo134074.1;Parent=Physo134074;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 672504 683277 . + . ID=Physo134075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290142;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 672504 683277 . + . ID=Physo134075;Parent=Physo134075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 672504 672554 . + 0 ID=Physo134075;Parent=Physo134075;rank=1 scaffold_29 . exon 672504 672554 . + . ID=Physo134075.1;Parent=Physo134075;constitutive=1;rank=1 scaffold_29 . CDS 672602 673097 . + 0 ID=Physo134075;Parent=Physo134075;rank=2 scaffold_29 . exon 672602 673097 . + . ID=Physo134075.2;Parent=Physo134075;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_29 . CDS 673160 673564 . + 0 ID=Physo134075;Parent=Physo134075;rank=3 scaffold_29 . exon 673160 673564 . + . ID=Physo134075.3;Parent=Physo134075;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 673618 675388 . + 0 ID=Physo134075;Parent=Physo134075;rank=4 scaffold_29 . exon 673618 675388 . + . ID=Physo134075.4;Parent=Physo134075;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_29 . CDS 675487 676562 . + 0 ID=Physo134075;Parent=Physo134075;rank=5 scaffold_29 . CDS 676871 677098 . + 0 ID=Physo134075;Parent=Physo134075;rank=6 scaffold_29 . CDS 677144 678883 . + 0 ID=Physo134075;Parent=Physo134075;rank=7 scaffold_29 . CDS 679119 679400 . + 0 ID=Physo134075;Parent=Physo134075;rank=8 scaffold_29 . CDS 679709 679936 . + 0 ID=Physo134075;Parent=Physo134075;rank=9 scaffold_29 . CDS 679982 683277 . + 0 ID=Physo134075;Parent=Physo134075;rank=10 scaffold_29 . exon 675487 676562 . + . ID=Physo134075.5;Parent=Physo134075;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_29 . exon 676871 677098 . + . ID=Physo134075.6;Parent=Physo134075;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_29 . exon 677144 678883 . + . ID=Physo134075.7;Parent=Physo134075;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_29 . exon 679119 679400 . + . ID=Physo134075.8;Parent=Physo134075;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_29 . exon 679709 679936 . + . ID=Physo134075.9;Parent=Physo134075;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_29 . exon 679982 683277 . + . ID=Physo134075.10;Parent=Physo134075;constitutive=1;ensembl_phase=1;rank=10 scaffold_29 . biological_region 686185 686186 0.999 + . logic_name=eponine scaffold_29 . biological_region 686947 686950 0.999 + . logic_name=eponine scaffold_29 . biological_region 688474 688481 0.999 - . logic_name=eponine scaffold_29 . repeat_region 689506 689518 . ? . description=dust scaffold_29 . repeat_region 692589 692596 . ? . description=dust scaffold_29 . repeat_region 693745 693769 . ? . description=dust scaffold_29 ensembl protein_coding_gene 684971 685306 . + . ID=Physo134076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290143;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 684971 685306 . + . ID=Physo134076;Parent=Physo134076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 684971 685306 . + 0 ID=Physo134076;Parent=Physo134076;rank=1 scaffold_29 . exon 684971 685306 . + . ID=Physo134076.1;Parent=Physo134076;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 685742 688739 . - . ID=Physo134077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290144;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 685742 688739 . - . ID=Physo134077;Parent=Physo134077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 685742 686386 . - 0 ID=Physo134077;Parent=Physo134077;rank=3 scaffold_29 . exon 685742 686386 . - . ID=Physo134077.3;Parent=Physo134077;constitutive=1;rank=3 scaffold_29 . CDS 686407 686638 . - 0 ID=Physo134077;Parent=Physo134077;rank=2 scaffold_29 . exon 686407 686638 . - . ID=Physo134077.2;Parent=Physo134077;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 686695 688739 . - 0 ID=Physo134077;Parent=Physo134077;rank=1 scaffold_29 . exon 686695 688739 . - . ID=Physo134077.1;Parent=Physo134077;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 ensembl protein_coding_gene 694825 695598 . + . ID=Physo134078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290145;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 694825 695598 . + . ID=Physo134078;Parent=Physo134078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 694825 695598 . + 0 ID=Physo134078;Parent=Physo134078;rank=1 scaffold_29 . exon 694825 695598 . + . ID=Physo134078.1;Parent=Physo134078;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 696259 698466 . + . ID=Physo134079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290146;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 696259 698466 . + . ID=Physo134079;Parent=Physo134079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 696259 696729 . + 0 ID=Physo134079;Parent=Physo134079;rank=1 scaffold_29 . exon 696259 696729 . + . ID=Physo134079.1;Parent=Physo134079;constitutive=1;rank=1 scaffold_29 . CDS 696758 696802 . + 0 ID=Physo134079;Parent=Physo134079;rank=2 scaffold_29 . exon 696758 696802 . + . ID=Physo134079.2;Parent=Physo134079;constitutive=1;rank=2 scaffold_29 . CDS 696870 697343 . + 0 ID=Physo134079;Parent=Physo134079;rank=3 scaffold_29 . exon 696870 697343 . + . ID=Physo134079.3;Parent=Physo134079;constitutive=1;rank=3 scaffold_29 . CDS 697584 697995 . + 0 ID=Physo134079;Parent=Physo134079;rank=4 scaffold_29 . exon 697584 697995 . + . ID=Physo134079.4;Parent=Physo134079;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_29 . CDS 698198 698466 . + 0 ID=Physo134079;Parent=Physo134079;rank=5 scaffold_29 . exon 698198 698466 . + . ID=Physo134079.5;Parent=Physo134079;constitutive=1;ensembl_phase=1;rank=5 scaffold_29 ensembl protein_coding_gene 699849 702931 . + . ID=Physo134080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290147;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 699849 702931 . + . ID=Physo134080;Parent=Physo134080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 699849 701477 . + 0 ID=Physo134080;Parent=Physo134080;rank=1 scaffold_29 . exon 699849 701477 . + . ID=Physo134080.1;Parent=Physo134080;constitutive=1;rank=1 scaffold_29 . CDS 701589 701735 . + 0 ID=Physo134080;Parent=Physo134080;rank=2 scaffold_29 . exon 701589 701735 . + . ID=Physo134080.2;Parent=Physo134080;constitutive=1;rank=2 scaffold_29 . CDS 702071 702931 . + 0 ID=Physo134080;Parent=Physo134080;rank=3 scaffold_29 . exon 702071 702931 . + . ID=Physo134080.3;Parent=Physo134080;constitutive=1;rank=3 scaffold_29 ensembl protein_coding_gene 703749 704657 . + . ID=Physo134081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290148;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 703749 704657 . + . ID=Physo134081;Parent=Physo134081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 703749 704657 . + 0 ID=Physo134081;Parent=Physo134081;rank=1 scaffold_29 . exon 703749 704657 . + . ID=Physo134081.1;Parent=Physo134081;constitutive=1;rank=1 scaffold_29 . repeat_region 704921 705440 . ? . description=dust scaffold_29 . repeat_region 705444 705451 . ? . description=dust scaffold_29 . repeat_region 705515 705574 . ? . description=dust scaffold_29 . repeat_region 705626 705636 . ? . description=dust scaffold_29 . repeat_region 705638 705656 . ? . description=dust scaffold_29 . repeat_region 707043 707052 . ? . description=dust scaffold_29 . repeat_region 707781 707817 . ? . description=trf scaffold_29 . repeat_region 710277 710367 . ? . description=trf scaffold_29 . biological_region 710997 711001 0.999 - . logic_name=eponine scaffold_29 . repeat_region 712953 712996 . ? . description=trf scaffold_29 . repeat_region 713171 713204 . ? . description=trf scaffold_29 ensembl protein_coding_gene 707039 709579 . - . ID=Physo134082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290149;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 707039 709579 . - . ID=Physo134082;Parent=Physo134082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 707039 707325 . - 0 ID=Physo134082;Parent=Physo134082;rank=6 scaffold_29 . exon 707039 707325 . - . ID=Physo134082.6;Parent=Physo134082;constitutive=1;ensembl_phase=1;rank=6 scaffold_29 . CDS 707427 707640 . - 0 ID=Physo134082;Parent=Physo134082;rank=5 scaffold_29 . exon 707427 707640 . - . ID=Physo134082.5;Parent=Physo134082;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_29 . CDS 707775 707888 . - 0 ID=Physo134082;Parent=Physo134082;rank=4 scaffold_29 . exon 707775 707888 . - . ID=Physo134082.4;Parent=Physo134082;constitutive=1;rank=4 scaffold_29 . CDS 707990 708177 . - 0 ID=Physo134082;Parent=Physo134082;rank=3 scaffold_29 . exon 707990 708177 . - . ID=Physo134082.3;Parent=Physo134082;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 708218 708721 . - 0 ID=Physo134082;Parent=Physo134082;rank=2 scaffold_29 . exon 708218 708721 . - . ID=Physo134082.2;Parent=Physo134082;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_29 . CDS 708751 709579 . - 0 ID=Physo134082;Parent=Physo134082;rank=1 scaffold_29 . exon 708751 709579 . - . ID=Physo134082.1;Parent=Physo134082;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_29 ensembl protein_coding_gene 710546 714864 . + . ID=Physo134083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290150;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 710546 714864 . + . ID=Physo134083;Parent=Physo134083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 710546 710578 . + 0 ID=Physo134083;Parent=Physo134083;rank=1 scaffold_29 . exon 710546 710578 . + . ID=Physo134083.1;Parent=Physo134083;constitutive=1;rank=1 scaffold_29 . CDS 710646 711349 . + 0 ID=Physo134083;Parent=Physo134083;rank=2 scaffold_29 . exon 710646 711349 . + . ID=Physo134083.2;Parent=Physo134083;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_29 . CDS 711486 711984 . + 0 ID=Physo134083;Parent=Physo134083;rank=3 scaffold_29 . exon 711486 711984 . + . ID=Physo134083.3;Parent=Physo134083;constitutive=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 712087 712360 . + 0 ID=Physo134083;Parent=Physo134083;rank=4 scaffold_29 . exon 712087 712360 . + . ID=Physo134083.4;Parent=Physo134083;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_29 . CDS 712819 714271 . + 0 ID=Physo134083;Parent=Physo134083;rank=5 scaffold_29 . exon 712819 714271 . + . ID=Physo134083.5;Parent=Physo134083;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_29 . CDS 714339 714864 . + 0 ID=Physo134083;Parent=Physo134083;rank=6 scaffold_29 . exon 714339 714864 . + . ID=Physo134083.6;Parent=Physo134083;constitutive=1;ensembl_phase=2;rank=6 scaffold_29 ensembl protein_coding_gene 715998 720554 . - . ID=Physo134084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290151;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 715998 720554 . - . ID=Physo134084;Parent=Physo134084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 715998 716279 . - 0 ID=Physo134084;Parent=Physo134084;rank=5 scaffold_29 . exon 715998 716279 . - . ID=Physo134084.5;Parent=Physo134084;constitutive=1;rank=5 scaffold_29 . CDS 716431 718616 . - 0 ID=Physo134084;Parent=Physo134084;rank=4 scaffold_29 . exon 716431 718616 . - . ID=Physo134084.4;Parent=Physo134084;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 718706 719147 . - 0 ID=Physo134084;Parent=Physo134084;rank=3 scaffold_29 . exon 718706 719147 . - . ID=Physo134084.3;Parent=Physo134084;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_29 . CDS 719169 719846 . - 0 ID=Physo134084;Parent=Physo134084;rank=2 scaffold_29 . exon 719169 719846 . - . ID=Physo134084.2;Parent=Physo134084;constitutive=1;rank=2 scaffold_29 . CDS 720222 720554 . - 0 ID=Physo134084;Parent=Physo134084;rank=1 scaffold_29 . exon 720222 720554 . - . ID=Physo134084.1;Parent=Physo134084;constitutive=1;rank=1 scaffold_29 ensembl protein_coding_gene 721037 722473 . - . ID=Physo134085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290152;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 721037 722473 . - . ID=Physo134085;Parent=Physo134085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 721037 722473 . - 0 ID=Physo134085;Parent=Physo134085;rank=1 scaffold_29 . exon 721037 722473 . - . ID=Physo134085.1;Parent=Physo134085;constitutive=1;rank=1 scaffold_29 . repeat_region 723626 723674 . ? . description=trf scaffold_29 . repeat_region 723646 723655 . ? . description=dust scaffold_29 . repeat_region 723651 723741 . ? . description=trf scaffold_29 . repeat_region 723656 723741 . ? . description=trf scaffold_29 . repeat_region 724582 724589 . ? . description=dust scaffold_29 . repeat_region 724709 724716 . ? . description=dust scaffold_29 . repeat_region 725874 725881 . ? . description=dust scaffold_29 . repeat_region 726614 726630 . ? . description=dust scaffold_29 . biological_region 726757 726763 0.999 + . logic_name=eponine scaffold_29 . biological_region 726781 726782 0.999 + . logic_name=eponine scaffold_29 . biological_region 726818 726825 0.999 - . logic_name=eponine scaffold_29 . biological_region 726857 726860 0.999 - . logic_name=eponine scaffold_29 . repeat_region 727037 727076 . ? . description=trf scaffold_29 . repeat_region 727173 727233 . ? . description=dust scaffold_29 . repeat_region 727179 727237 . ? . description=trf scaffold_29 . repeat_region 727182 727233 . ? . description=trf scaffold_29 . biological_region 727352 727354 0.999 - . logic_name=eponine scaffold_29 . repeat_region 731200 731208 . ? . description=dust scaffold_29 ensembl protein_coding_gene 726701 727351 . - . ID=Physo134086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290153;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 726701 727351 . - . ID=Physo134086;Parent=Physo134086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 726701 727178 . - 0 ID=Physo134086;Parent=Physo134086;rank=2 scaffold_29 . exon 726701 727178 . - . ID=Physo134086.2;Parent=Physo134086;constitutive=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 727326 727351 . - 0 ID=Physo134086;Parent=Physo134086;rank=1 scaffold_29 . exon 727326 727351 . - . ID=Physo134086.1;Parent=Physo134086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 ensembl protein_coding_gene 731311 732732 . - . ID=Physo134087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290154;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 731311 732732 . - . ID=Physo134087;Parent=Physo134087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 731311 731435 . - 0 ID=Physo134087;Parent=Physo134087;rank=6 scaffold_29 . exon 731311 731435 . - . ID=Physo134087.6;Parent=Physo134087;constitutive=1;ensembl_phase=1;rank=6 scaffold_29 . CDS 731497 731593 . - 0 ID=Physo134087;Parent=Physo134087;rank=5 scaffold_29 . exon 731497 731593 . - . ID=Physo134087.5;Parent=Physo134087;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_29 . CDS 731661 731695 . - 0 ID=Physo134087;Parent=Physo134087;rank=4 scaffold_29 . exon 731661 731695 . - . ID=Physo134087.4;Parent=Physo134087;constitutive=1;ensembl_phase=1;rank=4 scaffold_29 . CDS 731890 732068 . - 0 ID=Physo134087;Parent=Physo134087;rank=3 scaffold_29 . exon 731890 732068 . - . ID=Physo134087.3;Parent=Physo134087;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_29 . CDS 732138 732284 . - 0 ID=Physo134087;Parent=Physo134087;rank=2 scaffold_29 . exon 732138 732284 . - . ID=Physo134087.2;Parent=Physo134087;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_29 . CDS 732359 732732 . - 0 ID=Physo134087;Parent=Physo134087;rank=1 scaffold_29 . exon 732359 732732 . - . ID=Physo134087.1;Parent=Physo134087;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 ensembl protein_coding_gene 735633 737444 . + . ID=Physo134088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290155;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 735633 737444 . + . ID=Physo134088;Parent=Physo134088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 735633 736255 . + 0 ID=Physo134088;Parent=Physo134088;rank=1 scaffold_29 . exon 735633 736255 . + . ID=Physo134088.1;Parent=Physo134088;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 736323 736475 . + 0 ID=Physo134088;Parent=Physo134088;rank=2 scaffold_29 . exon 736323 736475 . + . ID=Physo134088.2;Parent=Physo134088;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_29 . CDS 736561 736626 . + 0 ID=Physo134088;Parent=Physo134088;rank=3 scaffold_29 . exon 736561 736626 . + . ID=Physo134088.3;Parent=Physo134088;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_29 . CDS 736718 736739 . + 0 ID=Physo134088;Parent=Physo134088;rank=4 scaffold_29 . exon 736718 736739 . + . ID=Physo134088.4;Parent=Physo134088;constitutive=1;ensembl_phase=2;rank=4 scaffold_29 . CDS 736824 736975 . + 0 ID=Physo134088;Parent=Physo134088;rank=5 scaffold_29 . exon 736824 736975 . + . ID=Physo134088.5;Parent=Physo134088;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_29 . CDS 737063 737117 . + 0 ID=Physo134088;Parent=Physo134088;rank=6 scaffold_29 . exon 737063 737444 . + . ID=Physo134088.6;Parent=Physo134088;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_29 ensembl protein_coding_gene 741196 742277 . + . ID=Physo134089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_290156;logic_name=jgi_physo1_1 scaffold_29 ensembl transcript 741196 742277 . + . ID=Physo134089;Parent=Physo134089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_29 . CDS 741196 741533 . + 0 ID=Physo134089;Parent=Physo134089;rank=1 scaffold_29 . exon 741196 741533 . + . ID=Physo134089.1;Parent=Physo134089;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_29 . CDS 741623 741798 . + 0 ID=Physo134089;Parent=Physo134089;rank=2 scaffold_29 . exon 741623 741798 . + . ID=Physo134089.2;Parent=Physo134089;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_29 . CDS 741872 742020 . + 0 ID=Physo134089;Parent=Physo134089;rank=3 scaffold_29 . exon 741872 742020 . + . ID=Physo134089.3;Parent=Physo134089;constitutive=1;ensembl_phase=1;rank=3 scaffold_29 . CDS 742251 742277 . + 0 ID=Physo134089;Parent=Physo134089;rank=4 scaffold_29 . exon 742251 742277 . + . ID=Physo134089.4;Parent=Physo134089;constitutive=1;rank=4 ##gff-version 3 ##sequence-region scaffold_28 1 749356 scaffold_28 . repeat_region 60 77 . ? . description=dust scaffold_28 . repeat_region 1336 16645 . ? . description=dust scaffold_28 . repeat_region 19178 19341 . ? . description=trf scaffold_28 ensembl protein_coding_gene 17284 18214 . - . ID=Physo133780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280001;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 17284 18214 . - . ID=Physo133780;Parent=Physo133780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 17284 17488 . - 0 ID=Physo133780;Parent=Physo133780;rank=3 scaffold_28 . exon 17284 17488 . - . ID=Physo133780.3;Parent=Physo133780;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 17671 17921 . - 0 ID=Physo133780;Parent=Physo133780;rank=2 scaffold_28 . exon 17671 17921 . - . ID=Physo133780.2;Parent=Physo133780;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 17978 18214 . - 0 ID=Physo133780;Parent=Physo133780;rank=1 scaffold_28 . exon 17978 18214 . - . ID=Physo133780.1;Parent=Physo133780;constitutive=1;rank=1 scaffold_28 . repeat_region 20904 20921 . ? . description=dust scaffold_28 . biological_region 24179 24181 0.999 + . logic_name=eponine scaffold_28 . biological_region 24229 24233 0.999 - . logic_name=eponine scaffold_28 . biological_region 24266 24271 0.999 - . logic_name=eponine scaffold_28 . biological_region 24283 24291 0.999 + . logic_name=eponine scaffold_28 . biological_region 24295 24297 0.999 - . logic_name=eponine scaffold_28 . repeat_region 25301 25334 . ? . description=dust scaffold_28 . repeat_region 29049 29056 . ? . description=dust scaffold_28 ensembl protein_coding_gene 21512 22517 . + . ID=Physo133781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280002;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 21512 22517 . + . ID=Physo133781;Parent=Physo133781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 21512 21825 . + . ID=Physo133781.1;Parent=Physo133781;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 21517 21825 . + 0 ID=Physo133781;Parent=Physo133781;rank=1 scaffold_28 . CDS 21893 22471 . + 0 ID=Physo133781;Parent=Physo133781;rank=2 scaffold_28 . exon 21893 22517 . + . ID=Physo133781.2;Parent=Physo133781;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_28 ensembl protein_coding_gene 22704 24445 . - . ID=Physo133782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280003;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 22704 24445 . - . ID=Physo133782;Parent=Physo133782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 22704 22746 . - 0 ID=Physo133782;Parent=Physo133782;rank=2 scaffold_28 . exon 22704 22746 . - . ID=Physo133782.2;Parent=Physo133782;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 22890 24445 . - 0 ID=Physo133782;Parent=Physo133782;rank=1 scaffold_28 . exon 22890 24445 . - . ID=Physo133782.1;Parent=Physo133782;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 24900 27914 . - . ID=Physo133783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280004;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 24900 27914 . - . ID=Physo133783;Parent=Physo133783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 24900 27914 . - 0 ID=Physo133783;Parent=Physo133783;rank=1 scaffold_28 . exon 24900 27914 . - . ID=Physo133783.1;Parent=Physo133783;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 28108 28999 . + . ID=Physo133784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280005;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 28108 28999 . + . ID=Physo133784;Parent=Physo133784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 28108 28365 . + 0 ID=Physo133784;Parent=Physo133784;rank=1 scaffold_28 . exon 28108 28365 . + . ID=Physo133784.1;Parent=Physo133784;constitutive=1;rank=1 scaffold_28 . CDS 28442 28527 . + 0 ID=Physo133784;Parent=Physo133784;rank=2 scaffold_28 . exon 28442 28527 . + . ID=Physo133784.2;Parent=Physo133784;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 28604 28721 . + 0 ID=Physo133784;Parent=Physo133784;rank=3 scaffold_28 . exon 28604 28721 . + . ID=Physo133784.3;Parent=Physo133784;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 28789 28850 . + 0 ID=Physo133784;Parent=Physo133784;rank=4 scaffold_28 . exon 28789 28850 . + . ID=Physo133784.4;Parent=Physo133784;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_28 . CDS 28921 28999 . + 0 ID=Physo133784;Parent=Physo133784;rank=5 scaffold_28 . exon 28921 28999 . + . ID=Physo133784.5;Parent=Physo133784;constitutive=1;ensembl_phase=2;rank=5 scaffold_28 ensembl protein_coding_gene 29308 31108 . - . ID=Physo133785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280006;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 29308 31108 . - . ID=Physo133785;Parent=Physo133785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 29308 29326 . - 0 ID=Physo133785;Parent=Physo133785;rank=4 scaffold_28 . exon 29308 29326 . - . ID=Physo133785.4;Parent=Physo133785;constitutive=1;ensembl_phase=2;rank=4 scaffold_28 . CDS 29392 30711 . - 0 ID=Physo133785;Parent=Physo133785;rank=3 scaffold_28 . exon 29392 30711 . - . ID=Physo133785.3;Parent=Physo133785;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_28 . CDS 30835 30925 . - 0 ID=Physo133785;Parent=Physo133785;rank=2 scaffold_28 . CDS 31078 31108 . - 0 ID=Physo133785;Parent=Physo133785;rank=1 scaffold_28 . repeat_region 33568 33611 . ? . description=trf scaffold_28 . repeat_region 37012 37032 . ? . description=trf scaffold_28 . exon 30835 30925 . - . ID=Physo133785.2;Parent=Physo133785;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_28 . exon 31078 31108 . - . ID=Physo133785.1;Parent=Physo133785;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 35685 37136 . - . ID=Physo133786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280007;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 35685 37136 . - . ID=Physo133786;Parent=Physo133786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 35685 37064 . - 0 ID=Physo133786;Parent=Physo133786;rank=1 scaffold_28 . exon 35685 37136 . - . ID=Physo133786.1;Parent=Physo133786;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 ensembl protein_coding_gene 38627 40206 . + . ID=Physo133787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280008;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 38627 40206 . + . ID=Physo133787;Parent=Physo133787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 38627 40206 . + . ID=Physo133787.1;Parent=Physo133787;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 39082 40173 . + 0 ID=Physo133787;Parent=Physo133787;rank=1 scaffold_28 . biological_region 40712 40713 0.999 + . logic_name=eponine scaffold_28 . biological_region 41486 41487 0.999 + . logic_name=eponine scaffold_28 . biological_region 41587 41589 0.999 + . logic_name=eponine scaffold_28 . biological_region 41635 41641 0.999 + . logic_name=eponine scaffold_28 . biological_region 41667 41674 0.999 - . logic_name=eponine scaffold_28 . repeat_region 41701 41748 . ? . description=dust scaffold_28 . biological_region 42444 42447 0.999 - . logic_name=eponine scaffold_28 . biological_region 44263 44266 0.999 + . logic_name=eponine scaffold_28 . biological_region 44979 44986 0.999 + . logic_name=eponine scaffold_28 . biological_region 45009 45010 0.999 - . logic_name=eponine scaffold_28 . biological_region 45053 45055 0.999 + . logic_name=eponine scaffold_28 . biological_region 45957 45962 0.999 + . logic_name=eponine scaffold_28 . biological_region 46057 46059 0.999 - . logic_name=eponine scaffold_28 . biological_region 46112 46115 0.999 + . logic_name=eponine scaffold_28 . biological_region 46649 46652 0.999 + . logic_name=eponine scaffold_28 . biological_region 46665 46672 0.999 + . logic_name=eponine scaffold_28 . biological_region 46677 46681 0.999 + . logic_name=eponine scaffold_28 . biological_region 46861 46866 0.999 - . logic_name=eponine scaffold_28 . biological_region 46917 46920 0.999 + . logic_name=eponine scaffold_28 . biological_region 46935 46945 0.999 - . logic_name=eponine scaffold_28 . biological_region 46974 46980 0.999 - . logic_name=eponine scaffold_28 . biological_region 46991 46994 0.999 - . logic_name=eponine scaffold_28 . biological_region 47009 47015 0.999 - . logic_name=eponine scaffold_28 . biological_region 47021 47023 0.999 + . logic_name=eponine scaffold_28 . biological_region 47031 47031 0.999 - . logic_name=eponine scaffold_28 . biological_region 47109 47111 0.999 - . logic_name=eponine scaffold_28 . biological_region 47116 47116 0.999 + . logic_name=eponine scaffold_28 . repeat_region 48479 48541 . ? . description=dust scaffold_28 ensembl protein_coding_gene 44989 47420 . + . ID=Physo115734;biotype=protein_coding;external_name=estExt_Genewise1.C_280056;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 44989 47420 . + . ID=Physo115734;Parent=Physo115734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 44989 46027 . + . ID=Physo115734.1;Parent=Physo115734;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 44992 46027 . + 0 ID=Physo115734;Parent=Physo115734;rank=1 scaffold_28 . CDS 46118 46577 . + 0 ID=Physo115734;Parent=Physo115734;rank=2 scaffold_28 . exon 46118 46577 . + . ID=Physo115734.2;Parent=Physo115734;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_28 . CDS 47193 47301 . + 0 ID=Physo115734;Parent=Physo115734;rank=3 scaffold_28 . exon 47193 47420 . + . ID=Physo115734.3;Parent=Physo115734;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_28 ensembl protein_coding_gene 40247 41877 . - . ID=Physo133788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280009;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 40247 41877 . - . ID=Physo133788;Parent=Physo133788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 40247 40451 . - . ID=Physo133788.4;Parent=Physo133788;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_28 . CDS 40404 40451 . - 0 ID=Physo133788;Parent=Physo133788;rank=4 scaffold_28 . CDS 40532 41112 . - 0 ID=Physo133788;Parent=Physo133788;rank=3 scaffold_28 . exon 40532 41112 . - . ID=Physo133788.3;Parent=Physo133788;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 41180 41367 . - 0 ID=Physo133788;Parent=Physo133788;rank=2 scaffold_28 . exon 41180 41367 . - . ID=Physo133788.2;Parent=Physo133788;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 41453 41829 . - 0 ID=Physo133788;Parent=Physo133788;rank=1 scaffold_28 . exon 41453 41877 . - . ID=Physo133788.1;Parent=Physo133788;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_28 ensembl protein_coding_gene 42231 42803 . - . ID=Physo133789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280010;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 42231 42803 . - . ID=Physo133789;Parent=Physo133789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 42231 42803 . - 0 ID=Physo133789;Parent=Physo133789;rank=1 scaffold_28 . exon 42231 42803 . - . ID=Physo133789.1;Parent=Physo133789;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 43906 44478 . + . ID=Physo133790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280011;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 43906 44478 . + . ID=Physo133790;Parent=Physo133790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 43906 44478 . + 0 ID=Physo133790;Parent=Physo133790;rank=1 scaffold_28 . exon 43906 44478 . + . ID=Physo133790.1;Parent=Physo133790;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 47511 48195 . - . ID=Physo133792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280013;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 47511 48195 . - . ID=Physo133792;Parent=Physo133792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 47511 48195 . - . ID=Physo133792.1;Parent=Physo133792;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 47647 48156 . - 0 ID=Physo133792;Parent=Physo133792;rank=1 scaffold_28 ensembl protein_coding_gene 48238 49259 . - . ID=Physo133793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280014;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 48238 49259 . - . ID=Physo133793;Parent=Physo133793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 48238 49259 . - . ID=Physo133793.1;Parent=Physo133793;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_28 . CDS 48471 49259 . - 0 ID=Physo133793;Parent=Physo133793;rank=1 scaffold_28 . repeat_region 52860 52912 . ? . description=trf scaffold_28 . repeat_region 52886 52905 . ? . description=trf scaffold_28 . repeat_region 58470 58514 . ? . description=trf scaffold_28 ensembl protein_coding_gene 50552 52705 . + . ID=Physo133794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280015;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 50552 52705 . + . ID=Physo133794;Parent=Physo133794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 50552 52705 . + 0 ID=Physo133794;Parent=Physo133794;rank=1 scaffold_28 . exon 50552 52705 . + . ID=Physo133794.1;Parent=Physo133794;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 52830 56801 . - . ID=Physo133795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280016;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 52830 56801 . - . ID=Physo133795;Parent=Physo133795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 52830 52910 . - 0 ID=Physo133795;Parent=Physo133795;rank=9 scaffold_28 . exon 52830 52910 . - . ID=Physo133795.9;Parent=Physo133795;constitutive=1;rank=9 scaffold_28 . CDS 53128 53910 . - 0 ID=Physo133795;Parent=Physo133795;rank=8 scaffold_28 . exon 53128 53910 . - . ID=Physo133795.8;Parent=Physo133795;constitutive=1;rank=8 scaffold_28 . CDS 53983 54805 . - 0 ID=Physo133795;Parent=Physo133795;rank=7 scaffold_28 . exon 53983 54805 . - . ID=Physo133795.7;Parent=Physo133795;constitutive=1;ensembl_phase=2;rank=7 scaffold_28 . CDS 55301 55525 . - 0 ID=Physo133795;Parent=Physo133795;rank=6 scaffold_28 . exon 55301 55525 . - . ID=Physo133795.6;Parent=Physo133795;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_28 . CDS 55701 55906 . - 0 ID=Physo133795;Parent=Physo133795;rank=5 scaffold_28 . exon 55701 55906 . - . ID=Physo133795.5;Parent=Physo133795;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_28 . CDS 55983 56324 . - 0 ID=Physo133795;Parent=Physo133795;rank=4 scaffold_28 . exon 55983 56324 . - . ID=Physo133795.4;Parent=Physo133795;constitutive=1;rank=4 scaffold_28 . CDS 56398 56553 . - 0 ID=Physo133795;Parent=Physo133795;rank=3 scaffold_28 . exon 56398 56553 . - . ID=Physo133795.3;Parent=Physo133795;constitutive=1;rank=3 scaffold_28 . CDS 56623 56689 . - 0 ID=Physo133795;Parent=Physo133795;rank=2 scaffold_28 . exon 56623 56689 . - . ID=Physo133795.2;Parent=Physo133795;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 56761 56801 . - 0 ID=Physo133795;Parent=Physo133795;rank=1 scaffold_28 . exon 56761 56801 . - . ID=Physo133795.1;Parent=Physo133795;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . biological_region 60386 60388 0.999 + . logic_name=eponine scaffold_28 . repeat_region 63252 64011 . + . description=GypsyPi-1c_I-int scaffold_28 . biological_region 63417 63417 0.999 + . logic_name=eponine scaffold_28 . repeat_region 64005 64012 . ? . description=dust scaffold_28 . biological_region 64612 64616 0.999 - . logic_name=eponine scaffold_28 . biological_region 65161 65168 0.999 + . logic_name=eponine scaffold_28 . biological_region 65190 65191 0.999 + . logic_name=eponine scaffold_28 . biological_region 65246 65247 0.999 + . logic_name=eponine scaffold_28 . biological_region 65262 65263 0.999 - . logic_name=eponine scaffold_28 . biological_region 65280 65284 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 63558 63890 . + . ID=Physo115736;biotype=protein_coding;external_name=estExt_Genewise1.C_280058;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 63558 63890 . + . ID=Physo115736;Parent=Physo115736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 63558 63890 . + . ID=Physo115736.1;Parent=Physo115736;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 63588 63890 . + 0 ID=Physo115736;Parent=Physo115736;rank=1 scaffold_28 ensembl protein_coding_gene 61285 62659 . - . ID=Physo133796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280017;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 61285 62659 . - . ID=Physo133796;Parent=Physo133796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 61285 61291 . - 0 ID=Physo133796;Parent=Physo133796;rank=7 scaffold_28 . exon 61285 61291 . - . ID=Physo133796.7;Parent=Physo133796;constitutive=1;ensembl_phase=2;rank=7 scaffold_28 . CDS 61338 61536 . - 0 ID=Physo133796;Parent=Physo133796;rank=6 scaffold_28 . exon 61338 61536 . - . ID=Physo133796.6;Parent=Physo133796;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_28 . CDS 61670 61765 . - 0 ID=Physo133796;Parent=Physo133796;rank=5 scaffold_28 . exon 61670 61765 . - . ID=Physo133796.5;Parent=Physo133796;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_28 . CDS 61787 62099 . - 0 ID=Physo133796;Parent=Physo133796;rank=4 scaffold_28 . exon 61787 62099 . - . ID=Physo133796.4;Parent=Physo133796;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_28 . CDS 62136 62228 . - 0 ID=Physo133796;Parent=Physo133796;rank=3 scaffold_28 . exon 62136 62228 . - . ID=Physo133796.3;Parent=Physo133796;constitutive=1;rank=3 scaffold_28 . CDS 62319 62478 . - 0 ID=Physo133796;Parent=Physo133796;rank=2 scaffold_28 . exon 62319 62478 . - . ID=Physo133796.2;Parent=Physo133796;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 62502 62659 . - 0 ID=Physo133796;Parent=Physo133796;rank=1 scaffold_28 . exon 62502 62659 . - . ID=Physo133796.1;Parent=Physo133796;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 65114 65545 . - . ID=Physo133798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280019;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 65114 65545 . - . ID=Physo133798;Parent=Physo133798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 65114 65545 . - 0 ID=Physo133798;Parent=Physo133798;rank=1 scaffold_28 . exon 65114 65545 . - . ID=Physo133798.1;Parent=Physo133798;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 74069 75258 . - . ID=Physo133799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280020;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 74069 75258 . - . ID=Physo133799;Parent=Physo133799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 74069 74223 . - 0 ID=Physo133799;Parent=Physo133799;rank=2 scaffold_28 . exon 74069 74223 . - . ID=Physo133799.2;Parent=Physo133799;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 74301 75258 . - 0 ID=Physo133799;Parent=Physo133799;rank=1 scaffold_28 . exon 74301 75258 . - . ID=Physo133799.1;Parent=Physo133799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . repeat_region 78278 80572 . ? . description=dust scaffold_28 . repeat_region 81545 81562 . ? . description=dust scaffold_28 . repeat_region 82716 82723 . ? . description=dust scaffold_28 . repeat_region 82762 82771 . ? . description=dust scaffold_28 . repeat_region 83657 83710 . ? . description=dust scaffold_28 . repeat_region 85644 85654 . ? . description=dust scaffold_28 . repeat_region 85940 86825 . ? . description=dust scaffold_28 . repeat_region 87844 87852 . ? . description=dust scaffold_28 . repeat_region 88032 88214 . - . description=GypsyPi-1c_LTR scaffold_28 . repeat_region 88336 88647 . - . description=GypsyPi-1c_I-int scaffold_28 . biological_region 88590 88591 0.999 + . logic_name=eponine scaffold_28 . biological_region 88785 88790 0.999 + . logic_name=eponine scaffold_28 . repeat_region 89224 89924 . - . description=GypsyPi-1c_I-int scaffold_28 ensembl protein_coding_gene 88804 90729 . + . ID=Physo133800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280021;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 88804 90729 . + . ID=Physo133800;Parent=Physo133800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 88804 90729 . + 0 ID=Physo133800;Parent=Physo133800;rank=1 scaffold_28 . exon 88804 90729 . + . ID=Physo133800.1;Parent=Physo133800;constitutive=1;rank=1 scaffold_28 . repeat_region 99479 99631 . ? . description=trf scaffold_28 ensembl protein_coding_gene 91229 91477 . - . ID=Physo115739;biotype=protein_coding;external_name=estExt_Genewise1.C_280061;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 91229 91477 . - . ID=Physo115739;Parent=Physo115739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 91229 91474 . - 0 ID=Physo115739;Parent=Physo115739;rank=1 scaffold_28 . exon 91229 91477 . - . ID=Physo115739.1;Parent=Physo115739;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 ensembl protein_coding_gene 94103 95107 . - . ID=Physo133801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280022;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 94103 95107 . - . ID=Physo133801;Parent=Physo133801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 94103 95107 . - 0 ID=Physo133801;Parent=Physo133801;rank=1 scaffold_28 . exon 94103 95107 . - . ID=Physo133801.1;Parent=Physo133801;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 95827 96310 . - . ID=Physo133802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280023;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 95827 96310 . - . ID=Physo133802;Parent=Physo133802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 95827 96047 . - 0 ID=Physo133802;Parent=Physo133802;rank=2 scaffold_28 . exon 95827 96047 . - . ID=Physo133802.2;Parent=Physo133802;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 96127 96310 . - 0 ID=Physo133802;Parent=Physo133802;rank=1 scaffold_28 . exon 96127 96310 . - . ID=Physo133802.1;Parent=Physo133802;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . repeat_region 100076 106965 . ? . description=dust scaffold_28 . repeat_region 107004 107949 . + . description=GypsyPi-1c_I-int scaffold_28 . biological_region 108387 108392 0.999 - . logic_name=eponine scaffold_28 . biological_region 108586 108587 0.999 - . logic_name=eponine scaffold_28 . repeat_region 108962 109144 . + . description=GypsyPi-1c_LTR scaffold_28 . biological_region 109393 109396 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 107595 108654 . - . ID=Physo133803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280024;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 107595 108654 . - . ID=Physo133803;Parent=Physo133803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 107595 107604 . - 0 ID=Physo133803;Parent=Physo133803;rank=3 scaffold_28 . exon 107595 107604 . - . ID=Physo133803.3;Parent=Physo133803;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 107630 108480 . - 0 ID=Physo133803;Parent=Physo133803;rank=2 scaffold_28 . exon 107630 108480 . - . ID=Physo133803.2;Parent=Physo133803;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 108523 108654 . - 0 ID=Physo133803;Parent=Physo133803;rank=1 scaffold_28 . exon 108523 108654 . - . ID=Physo133803.1;Parent=Physo133803;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 109409 114889 . + . ID=Physo133804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280025;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 109409 114889 . + . ID=Physo133804;Parent=Physo133804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 109409 109731 . + 0 ID=Physo133804;Parent=Physo133804;rank=1 scaffold_28 . exon 109409 109731 . + . ID=Physo133804.1;Parent=Physo133804;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 109758 110061 . + 0 ID=Physo133804;Parent=Physo133804;rank=2 scaffold_28 . exon 109758 110061 . + . ID=Physo133804.2;Parent=Physo133804;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 110749 111309 . + 0 ID=Physo133804;Parent=Physo133804;rank=3 scaffold_28 . CDS 111354 111983 . + 0 ID=Physo133804;Parent=Physo133804;rank=4 scaffold_28 . CDS 112077 112316 . + 0 ID=Physo133804;Parent=Physo133804;rank=5 scaffold_28 . CDS 112349 112945 . + 0 ID=Physo133804;Parent=Physo133804;rank=6 scaffold_28 . CDS 113144 113257 . + 0 ID=Physo133804;Parent=Physo133804;rank=7 scaffold_28 . CDS 113333 113515 . + 0 ID=Physo133804;Parent=Physo133804;rank=8 scaffold_28 . CDS 113575 113842 . + 0 ID=Physo133804;Parent=Physo133804;rank=9 scaffold_28 . CDS 114138 114319 . + 0 ID=Physo133804;Parent=Physo133804;rank=10 scaffold_28 . CDS 114407 114889 . + 0 ID=Physo133804;Parent=Physo133804;rank=11 scaffold_28 . exon 110749 111309 . + . ID=Physo133804.3;Parent=Physo133804;constitutive=1;rank=3 scaffold_28 . exon 111354 111983 . + . ID=Physo133804.4;Parent=Physo133804;constitutive=1;rank=4 scaffold_28 . exon 112077 112316 . + . ID=Physo133804.5;Parent=Physo133804;constitutive=1;rank=5 scaffold_28 . exon 112349 112945 . + . ID=Physo133804.6;Parent=Physo133804;constitutive=1;rank=6 scaffold_28 . exon 113144 113257 . + . ID=Physo133804.7;Parent=Physo133804;constitutive=1;rank=7 scaffold_28 . exon 113333 113515 . + . ID=Physo133804.8;Parent=Physo133804;constitutive=1;rank=8 scaffold_28 . exon 113575 113842 . + . ID=Physo133804.9;Parent=Physo133804;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_28 . exon 114138 114319 . + . ID=Physo133804.10;Parent=Physo133804;constitutive=1;ensembl_phase=1;rank=10 scaffold_28 . exon 114407 114889 . + . ID=Physo133804.11;Parent=Physo133804;constitutive=1;rank=11 scaffold_28 ensembl protein_coding_gene 115301 115714 . - . ID=Physo133805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280026;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 115301 115714 . - . ID=Physo133805;Parent=Physo133805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 115301 115714 . - 0 ID=Physo133805;Parent=Physo133805;rank=1 scaffold_28 . exon 115301 115714 . - . ID=Physo133805.1;Parent=Physo133805;constitutive=1;rank=1 scaffold_28 . repeat_region 122099 122111 . ? . description=dust scaffold_28 . biological_region 122360 122365 0.999 - . logic_name=eponine scaffold_28 . repeat_region 123065 123145 . ? . description=trf scaffold_28 . biological_region 123896 123898 0.999 - . logic_name=eponine scaffold_28 . biological_region 124127 124132 0.999 - . logic_name=eponine scaffold_28 . repeat_region 124379 124561 . - . description=GypsyPi-1c_LTR scaffold_28 . repeat_region 124849 126190 . ? . description=dust scaffold_28 . repeat_region 128029 128039 . ? . description=dust scaffold_28 . repeat_region 128500 128578 . ? . description=trf scaffold_28 . repeat_region 129044 129051 . ? . description=dust scaffold_28 ensembl protein_coding_gene 139748 140176 . - . ID=Physo133806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280027;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 139748 140176 . - . ID=Physo133806;Parent=Physo133806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 139748 140176 . - 0 ID=Physo133806;Parent=Physo133806;rank=1 scaffold_28 . exon 139748 140176 . - . ID=Physo133806.1;Parent=Physo133806;constitutive=1;rank=1 scaffold_28 . biological_region 139904 139909 0.999 - . logic_name=eponine scaffold_28 . biological_region 140527 140529 0.999 - . logic_name=eponine scaffold_28 . repeat_region 142518 143889 . + . description=GypsyPi-1c_I-int scaffold_28 . repeat_region 147934 148025 . - . description=GypsyPi-1c_I-int scaffold_28 ensembl protein_coding_gene 142291 144274 . + . ID=Physo133807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280028;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 142291 144274 . + . ID=Physo133807;Parent=Physo133807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 142291 144144 . + 0 ID=Physo133807;Parent=Physo133807;rank=1 scaffold_28 . exon 142291 144144 . + . ID=Physo133807.1;Parent=Physo133807;constitutive=1;rank=1 scaffold_28 . CDS 144218 144274 . + 0 ID=Physo133807;Parent=Physo133807;rank=2 scaffold_28 . exon 144218 144274 . + . ID=Physo133807.2;Parent=Physo133807;constitutive=1;rank=2 scaffold_28 ensembl protein_coding_gene 147048 147923 . - . ID=Physo133808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280029;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 147048 147923 . - . ID=Physo133808;Parent=Physo133808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 147048 147923 . - 0 ID=Physo133808;Parent=Physo133808;rank=1 scaffold_28 . exon 147048 147923 . - . ID=Physo133808.1;Parent=Physo133808;constitutive=1;rank=1 scaffold_28 . repeat_region 157851 157900 . ? . description=dust scaffold_28 ensembl protein_coding_gene 153167 154010 . + . ID=Physo133809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280030;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 153167 154010 . + . ID=Physo133809;Parent=Physo133809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 153167 153292 . + 0 ID=Physo133809;Parent=Physo133809;rank=1 scaffold_28 . exon 153167 153292 . + . ID=Physo133809.1;Parent=Physo133809;constitutive=1;rank=1 scaffold_28 . CDS 153334 153966 . + 0 ID=Physo133809;Parent=Physo133809;rank=2 scaffold_28 . exon 153334 153966 . + . ID=Physo133809.2;Parent=Physo133809;constitutive=1;rank=2 scaffold_28 . CDS 154005 154010 . + 0 ID=Physo133809;Parent=Physo133809;rank=3 scaffold_28 . exon 154005 154010 . + . ID=Physo133809.3;Parent=Physo133809;constitutive=1;rank=3 scaffold_28 ensembl protein_coding_gene 154391 155332 . + . ID=Physo133810;biotype=protein_coding;description=PsAvh141 [Source:UniProtKB/TrEMBL%3BAcc:E0W4X6];external_name=estExt_fgenesh1_pg.C_280031;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 154391 155332 . + . ID=Physo133810;Parent=Physo133810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 154391 155332 . + 0 ID=Physo133810;Parent=Physo133810;rank=1 scaffold_28 . exon 154391 155332 . + . ID=Physo133810.1;Parent=Physo133810;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 156144 156666 . - . ID=Physo133811;biotype=protein_coding;description=PsAvh157 [Source:UniProtKB/TrEMBL%3BAcc:E0W4X7];external_name=estExt_fgenesh1_pg.C_280032;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 156144 156666 . - . ID=Physo133811;Parent=Physo133811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 156144 156153 . - 0 ID=Physo133811;Parent=Physo133811;rank=2 scaffold_28 . exon 156144 156153 . - . ID=Physo133811.2;Parent=Physo133811;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 156197 156666 . - 0 ID=Physo133811;Parent=Physo133811;rank=1 scaffold_28 . exon 156197 156666 . - . ID=Physo133811.1;Parent=Physo133811;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . biological_region 168520 168521 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 161290 161832 . - . ID=Physo133812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280033;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 161290 161832 . - . ID=Physo133812;Parent=Physo133812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 161290 161394 . - 0 ID=Physo133812;Parent=Physo133812;rank=2 scaffold_28 . exon 161290 161394 . - . ID=Physo133812.2;Parent=Physo133812;constitutive=1;rank=2 scaffold_28 . CDS 161491 161832 . - 0 ID=Physo133812;Parent=Physo133812;rank=1 scaffold_28 . exon 161491 161832 . - . ID=Physo133812.1;Parent=Physo133812;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 163618 164310 . + . ID=Physo133813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280034;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 163618 164310 . + . ID=Physo133813;Parent=Physo133813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 163618 163687 . + 0 ID=Physo133813;Parent=Physo133813;rank=1 scaffold_28 . exon 163618 163687 . + . ID=Physo133813.1;Parent=Physo133813;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 163862 164310 . + 0 ID=Physo133813;Parent=Physo133813;rank=2 scaffold_28 . exon 163862 164310 . + . ID=Physo133813.2;Parent=Physo133813;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . repeat_region 169923 169933 . ? . description=dust scaffold_28 . repeat_region 172269 172320 . ? . description=trf scaffold_28 . repeat_region 172493 172582 . ? . description=trf scaffold_28 . repeat_region 173030 173075 . ? . description=trf scaffold_28 . repeat_region 176174 176266 . ? . description=trf scaffold_28 . repeat_region 176242 176291 . ? . description=trf scaffold_28 ensembl protein_coding_gene 176754 177100 . - . ID=Physo115742;biotype=protein_coding;external_name=estExt_Genewise1.C_280064;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 176754 177100 . - . ID=Physo115742;Parent=Physo115742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 176754 177100 . - . ID=Physo115742.1;Parent=Physo115742;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 176882 177052 . - 0 ID=Physo115742;Parent=Physo115742;rank=1 scaffold_28 ensembl protein_coding_gene 177452 177616 . - . ID=Physo115743;biotype=protein_coding;external_name=estExt_Genewise1.C_280065;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 177452 177616 . - . ID=Physo115743;Parent=Physo115743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 177452 177583 . - 0 ID=Physo115743;Parent=Physo115743;rank=1 scaffold_28 . exon 177452 177616 . - . ID=Physo115743.1;Parent=Physo115743;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 ensembl protein_coding_gene 177736 177897 . - . ID=Physo115745;biotype=protein_coding;external_name=estExt_Genewise1.C_280067;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 177736 177897 . - . ID=Physo115745;Parent=Physo115745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 177736 177897 . - 0 ID=Physo115745;Parent=Physo115745;rank=1 scaffold_28 . exon 177736 177897 . - . ID=Physo115745.1;Parent=Physo115745;constitutive=1;rank=1 scaffold_28 . repeat_region 179950 180084 . + . description=(TCG)n scaffold_28 . biological_region 180424 180429 0.999 - . logic_name=eponine scaffold_28 . biological_region 180451 180455 0.999 - . logic_name=eponine scaffold_28 . biological_region 181173 181179 0.999 + . logic_name=eponine scaffold_28 . biological_region 181460 181463 0.999 - . logic_name=eponine scaffold_28 . biological_region 181466 181471 0.999 - . logic_name=eponine scaffold_28 . biological_region 181482 181488 0.999 - . logic_name=eponine scaffold_28 . biological_region 181492 181494 0.999 - . logic_name=eponine scaffold_28 . biological_region 183476 183477 0.999 + . logic_name=eponine scaffold_28 . biological_region 184723 184726 0.999 - . logic_name=eponine scaffold_28 . biological_region 185576 185579 0.999 + . logic_name=eponine scaffold_28 . biological_region 185971 185971 0.999 + . logic_name=eponine scaffold_28 . biological_region 186058 186060 0.999 - . logic_name=eponine scaffold_28 . biological_region 187223 187225 0.999 - . logic_name=eponine scaffold_28 . biological_region 189174 189176 0.999 - . logic_name=eponine scaffold_28 . biological_region 189188 189189 0.999 + . logic_name=eponine scaffold_28 . biological_region 189242 189246 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 188698 189246 . - . ID=Physo115748;biotype=protein_coding;external_name=estExt_Genewise1.C_280070;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 188698 189246 . - . ID=Physo115748;Parent=Physo115748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 188698 188984 . - . ID=Physo115748.2;Parent=Physo115748;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_28 . CDS 188725 188984 . - 0 ID=Physo115748;Parent=Physo115748;rank=2 scaffold_28 . CDS 189062 189245 . - 0 ID=Physo115748;Parent=Physo115748;rank=1 scaffold_28 . exon 189062 189246 . - . ID=Physo115748.1;Parent=Physo115748;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_28 ensembl protein_coding_gene 181163 181851 . - . ID=Physo133815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280036;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 181163 181851 . - . ID=Physo133815;Parent=Physo133815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 181163 181613 . - 0 ID=Physo133815;Parent=Physo133815;rank=3 scaffold_28 . exon 181163 181613 . - . ID=Physo133815.3;Parent=Physo133815;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 181679 181700 . - 0 ID=Physo133815;Parent=Physo133815;rank=2 scaffold_28 . exon 181679 181700 . - . ID=Physo133815.2;Parent=Physo133815;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_28 . CDS 181839 181851 . - 0 ID=Physo133815;Parent=Physo133815;rank=1 scaffold_28 . exon 181839 181851 . - . ID=Physo133815.1;Parent=Physo133815;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 183300 183734 . - . ID=Physo133816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280037;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 183300 183734 . - . ID=Physo133816;Parent=Physo133816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 183300 183734 . - 0 ID=Physo133816;Parent=Physo133816;rank=1 scaffold_28 . exon 183300 183734 . - . ID=Physo133816.1;Parent=Physo133816;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 184400 185023 . - . ID=Physo133817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280038;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 184400 185023 . - . ID=Physo133817;Parent=Physo133817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 184400 185023 . - . ID=Physo133817.1;Parent=Physo133817;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 184509 184970 . - 0 ID=Physo133817;Parent=Physo133817;rank=1 scaffold_28 ensembl protein_coding_gene 185903 186361 . - . ID=Physo133818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280039;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 185903 186361 . - . ID=Physo133818;Parent=Physo133818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 185903 186361 . - 0 ID=Physo133818;Parent=Physo133818;rank=1 scaffold_28 . exon 185903 186361 . - . ID=Physo133818.1;Parent=Physo133818;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 189411 190158 . + . ID=Physo133820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280041;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 189411 190158 . + . ID=Physo133820;Parent=Physo133820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 189411 189514 . + 0 ID=Physo133820;Parent=Physo133820;rank=1 scaffold_28 . exon 189411 189514 . + . ID=Physo133820.1;Parent=Physo133820;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 189544 189598 . + 0 ID=Physo133820;Parent=Physo133820;rank=2 scaffold_28 . exon 189544 189598 . + . ID=Physo133820.2;Parent=Physo133820;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 189693 189828 . + 0 ID=Physo133820;Parent=Physo133820;rank=3 scaffold_28 . exon 189693 189828 . + . ID=Physo133820.3;Parent=Physo133820;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_28 . CDS 189897 189919 . + 0 ID=Physo133820;Parent=Physo133820;rank=4 scaffold_28 . repeat_region 193229 193248 . ? . description=trf scaffold_28 . repeat_region 195370 195420 . ? . description=trf scaffold_28 . repeat_region 198126 198153 . ? . description=trf scaffold_28 ensembl protein_coding_gene 198200 198946 . + . ID=Physo108732;biotype=protein_coding;description=Elicitin-like protein SOL2A [Source:UniProtKB/TrEMBL%3BAcc:Q2N058];external_name=estExt_fgenesh1_pm.C_280002;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 198200 198946 . + . ID=Physo108732;Parent=Physo108732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 198200 198946 . + . ID=Physo108732.1;Parent=Physo108732;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 198243 198854 . + 0 ID=Physo108732;Parent=Physo108732;rank=1 scaffold_28 ensembl protein_coding_gene 190626 191042 . - . ID=Physo115752;biotype=protein_coding;external_name=estExt_Genewise1.C_280074;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 190626 191042 . - . ID=Physo115752;Parent=Physo115752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 190626 190964 . - 0 ID=Physo115752;Parent=Physo115752;rank=1 scaffold_28 . exon 190626 191042 . - . ID=Physo115752.1;Parent=Physo115752;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 . exon 189897 190158 . + . ID=Physo133820.4;Parent=Physo133820;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_28 ensembl protein_coding_gene 192402 193016 . + . ID=Physo133822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280043;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 192402 193016 . + . ID=Physo133822;Parent=Physo133822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 192402 193016 . + 0 ID=Physo133822;Parent=Physo133822;rank=1 scaffold_28 . exon 192402 193016 . + . ID=Physo133822.1;Parent=Physo133822;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 193119 193913 . - . ID=Physo133823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280044;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 193119 193913 . - . ID=Physo133823;Parent=Physo133823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 193119 193411 . - . ID=Physo133823.3;Parent=Physo133823;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_28 . CDS 193299 193411 . - 0 ID=Physo133823;Parent=Physo133823;rank=3 scaffold_28 . CDS 193493 193567 . - 0 ID=Physo133823;Parent=Physo133823;rank=2 scaffold_28 . exon 193493 193567 . - . ID=Physo133823.2;Parent=Physo133823;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 193637 193913 . - 0 ID=Physo133823;Parent=Physo133823;rank=1 scaffold_28 . exon 193637 193913 . - . ID=Physo133823.1;Parent=Physo133823;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 194957 195505 . + . ID=Physo133824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280045;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 194957 195505 . + . ID=Physo133824;Parent=Physo133824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 194957 195505 . + 0 ID=Physo133824;Parent=Physo133824;rank=1 scaffold_28 . exon 194957 195505 . + . ID=Physo133824.1;Parent=Physo133824;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 196367 197015 . + . ID=Physo133825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280046;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 196367 197015 . + . ID=Physo133825;Parent=Physo133825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 196367 197015 . + . ID=Physo133825.1;Parent=Physo133825;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 196416 197015 . + 0 ID=Physo133825;Parent=Physo133825;rank=1 scaffold_28 . biological_region 204118 204122 0.999 + . logic_name=eponine scaffold_28 . biological_region 205298 205301 0.999 - . logic_name=eponine scaffold_28 . biological_region 206254 206259 0.999 - . logic_name=eponine scaffold_28 . biological_region 206310 206312 0.999 + . logic_name=eponine scaffold_28 . biological_region 206329 206333 0.999 - . logic_name=eponine scaffold_28 . biological_region 206332 206334 0.999 + . logic_name=eponine scaffold_28 . biological_region 206357 206359 0.999 - . logic_name=eponine scaffold_28 . biological_region 206441 206443 0.999 - . logic_name=eponine scaffold_28 . biological_region 206943 206951 0.999 + . logic_name=eponine scaffold_28 . biological_region 206963 206971 0.999 + . logic_name=eponine scaffold_28 . biological_region 207024 207024 0.999 - . logic_name=eponine scaffold_28 . biological_region 207077 207078 0.999 - . logic_name=eponine scaffold_28 . biological_region 208354 208358 0.999 - . logic_name=eponine scaffold_28 . biological_region 208368 208373 0.999 - . logic_name=eponine scaffold_28 . repeat_region 208426 208469 . ? . description=dust scaffold_28 . biological_region 208843 208845 0.999 + . logic_name=eponine scaffold_28 . biological_region 208915 208917 0.999 - . logic_name=eponine scaffold_28 . biological_region 209228 209230 0.999 - . logic_name=eponine scaffold_28 . biological_region 209424 209428 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 203873 204396 . + . ID=Physo133829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280050;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 203873 204396 . + . ID=Physo133829;Parent=Physo133829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 203873 204396 . + . ID=Physo133829.1;Parent=Physo133829;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 203879 204331 . + 0 ID=Physo133829;Parent=Physo133829;rank=1 scaffold_28 ensembl protein_coding_gene 204540 207084 . - . ID=Physo133830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280051;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 204540 207084 . - . ID=Physo133830;Parent=Physo133830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 204540 205628 . - 0 ID=Physo133830;Parent=Physo133830;rank=4 scaffold_28 . exon 204540 205628 . - . ID=Physo133830.4;Parent=Physo133830;constitutive=1;rank=4 scaffold_28 . CDS 205709 206716 . - 0 ID=Physo133830;Parent=Physo133830;rank=3 scaffold_28 . exon 205709 206716 . - . ID=Physo133830.3;Parent=Physo133830;constitutive=1;rank=3 scaffold_28 . CDS 206818 206897 . - 0 ID=Physo133830;Parent=Physo133830;rank=2 scaffold_28 . exon 206818 206897 . - . ID=Physo133830.2;Parent=Physo133830;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 206991 207084 . - 0 ID=Physo133830;Parent=Physo133830;rank=1 scaffold_28 . exon 206991 207084 . - . ID=Physo133830.1;Parent=Physo133830;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 208266 210473 . + . ID=Physo133831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280052;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 208266 210473 . + . ID=Physo133831;Parent=Physo133831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 208266 208373 . + 0 ID=Physo133831;Parent=Physo133831;rank=1 scaffold_28 . exon 208266 208373 . + . ID=Physo133831.1;Parent=Physo133831;constitutive=1;rank=1 scaffold_28 . CDS 208475 208481 . + 0 ID=Physo133831;Parent=Physo133831;rank=2 scaffold_28 . exon 208475 208481 . + . ID=Physo133831.2;Parent=Physo133831;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 208566 208661 . + 0 ID=Physo133831;Parent=Physo133831;rank=3 scaffold_28 . exon 208566 208661 . + . ID=Physo133831.3;Parent=Physo133831;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 208750 210473 . + 0 ID=Physo133831;Parent=Physo133831;rank=4 scaffold_28 . exon 208750 210473 . + . ID=Physo133831.4;Parent=Physo133831;constitutive=1;ensembl_phase=1;rank=4 scaffold_28 ensembl protein_coding_gene 200889 203357 . + . ID=Physo156821;biotype=protein_coding;external_name=C_scaffold_28000005;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 200889 203357 . + . ID=Physo156821;Parent=Physo156821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 200889 201002 . + 0 ID=Physo156821;Parent=Physo156821;rank=1 scaffold_28 . exon 200889 201002 . + . ID=Physo156821.1;Parent=Physo156821;constitutive=1;rank=1 scaffold_28 . CDS 201042 201669 . + 0 ID=Physo156821;Parent=Physo156821;rank=2 scaffold_28 . exon 201042 201669 . + . ID=Physo156821.2;Parent=Physo156821;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 202396 202924 . + 0 ID=Physo156821;Parent=Physo156821;rank=3 scaffold_28 . exon 202396 202924 . + . ID=Physo156821.3;Parent=Physo156821;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_28 . CDS 203030 203357 . + 0 ID=Physo156821;Parent=Physo156821;rank=4 scaffold_28 . exon 203030 203357 . + . ID=Physo156821.4;Parent=Physo156821;constitutive=1;ensembl_phase=2;rank=4 scaffold_28 . repeat_region 213986 214022 . ? . description=trf scaffold_28 ensembl protein_coding_gene 211218 211997 . - . ID=Physo133832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280053;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 211218 211997 . - . ID=Physo133832;Parent=Physo133832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 211218 211764 . - 0 ID=Physo133832;Parent=Physo133832;rank=2 scaffold_28 . exon 211218 211764 . - . ID=Physo133832.2;Parent=Physo133832;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 211951 211997 . - 0 ID=Physo133832;Parent=Physo133832;rank=1 scaffold_28 . exon 211951 211997 . - . ID=Physo133832.1;Parent=Physo133832;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 213396 215284 . + . ID=Physo133833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280054;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 213396 215284 . + . ID=Physo133833;Parent=Physo133833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 213396 214269 . + 0 ID=Physo133833;Parent=Physo133833;rank=1 scaffold_28 . exon 213396 214269 . + . ID=Physo133833.1;Parent=Physo133833;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 214350 214422 . + 0 ID=Physo133833;Parent=Physo133833;rank=2 scaffold_28 . exon 214350 214422 . + . ID=Physo133833.2;Parent=Physo133833;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_28 . CDS 214493 214593 . + 0 ID=Physo133833;Parent=Physo133833;rank=3 scaffold_28 . exon 214493 214593 . + . ID=Physo133833.3;Parent=Physo133833;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 214665 214730 . + 0 ID=Physo133833;Parent=Physo133833;rank=4 scaffold_28 . exon 214665 214730 . + . ID=Physo133833.4;Parent=Physo133833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_28 . CDS 214805 214960 . + 0 ID=Physo133833;Parent=Physo133833;rank=5 scaffold_28 . exon 214805 214960 . + . ID=Physo133833.5;Parent=Physo133833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_28 . CDS 215038 215118 . + 0 ID=Physo133833;Parent=Physo133833;rank=6 scaffold_28 . exon 215038 215118 . + . ID=Physo133833.6;Parent=Physo133833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_28 . CDS 215202 215284 . + 0 ID=Physo133833;Parent=Physo133833;rank=7 scaffold_28 . exon 215202 215284 . + . ID=Physo133833.7;Parent=Physo133833;constitutive=1;ensembl_phase=1;rank=7 scaffold_28 ensembl protein_coding_gene 215721 216183 . - . ID=Physo133834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280055;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 215721 216183 . - . ID=Physo133834;Parent=Physo133834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 215721 215909 . - . ID=Physo133834.2;Parent=Physo133834;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_28 . CDS 215736 215909 . - 0 ID=Physo133834;Parent=Physo133834;rank=2 scaffold_28 . CDS 215987 216181 . - 0 ID=Physo133834;Parent=Physo133834;rank=1 scaffold_28 . exon 215987 216183 . - . ID=Physo133834.1;Parent=Physo133834;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 . biological_region 222895 222895 0.999 - . logic_name=eponine scaffold_28 . biological_region 223131 223136 0.999 - . logic_name=eponine scaffold_28 . biological_region 224428 224429 0.999 - . logic_name=eponine scaffold_28 . repeat_region 226132 226152 . ? . description=dust scaffold_28 . biological_region 226588 226589 0.999 + . logic_name=eponine scaffold_28 . repeat_region 226632 226640 . ? . description=dust scaffold_28 ensembl protein_coding_gene 222168 222647 . + . ID=Physo133835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280056;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 222168 222647 . + . ID=Physo133835;Parent=Physo133835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 222168 222647 . + 0 ID=Physo133835;Parent=Physo133835;rank=1 scaffold_28 . exon 222168 222647 . + . ID=Physo133835.1;Parent=Physo133835;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 226328 227088 . - . ID=Physo133836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280057;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 226328 227088 . - . ID=Physo133836;Parent=Physo133836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 226328 226594 . - 0 ID=Physo133836;Parent=Physo133836;rank=2 scaffold_28 . exon 226328 226594 . - . ID=Physo133836.2;Parent=Physo133836;constitutive=1;rank=2 scaffold_28 . CDS 226666 227088 . - 0 ID=Physo133836;Parent=Physo133836;rank=1 scaffold_28 . exon 226666 227088 . - . ID=Physo133836.1;Parent=Physo133836;constitutive=1;rank=1 scaffold_28 . repeat_region 235316 235361 . ? . description=trf scaffold_28 . repeat_region 236424 236490 . ? . description=trf scaffold_28 ensembl protein_coding_gene 233131 233892 . + . ID=Physo108733;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_280003;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 233131 233892 . + . ID=Physo108733;Parent=Physo108733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 233131 233592 . + 0 ID=Physo108733;Parent=Physo108733;rank=1 scaffold_28 . exon 233131 233592 . + . ID=Physo108733.1;Parent=Physo108733;constitutive=1;rank=1 scaffold_28 . CDS 233707 233892 . + 0 ID=Physo108733;Parent=Physo108733;rank=2 scaffold_28 . exon 233707 233892 . + . ID=Physo108733.2;Parent=Physo108733;constitutive=1;rank=2 scaffold_28 ensembl protein_coding_gene 236654 237577 . + . ID=Physo133838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280059;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 236654 237577 . + . ID=Physo133838;Parent=Physo133838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 236654 237577 . + 0 ID=Physo133838;Parent=Physo133838;rank=1 scaffold_28 . exon 236654 237577 . + . ID=Physo133838.1;Parent=Physo133838;constitutive=1;rank=1 scaffold_28 . biological_region 241581 241584 0.999 + . logic_name=eponine scaffold_28 . biological_region 241783 241784 0.999 - . logic_name=eponine scaffold_28 . repeat_region 244972 245124 . - . description=Polinton-1_PI scaffold_28 . repeat_region 247257 247320 . ? . description=dust scaffold_28 . biological_region 247299 247302 0.999 + . logic_name=eponine scaffold_28 . biological_region 247310 247318 0.999 - . logic_name=eponine scaffold_28 . biological_region 247320 247325 0.999 + . logic_name=eponine scaffold_28 . repeat_region 247383 247496 . + . description=(CAG)n scaffold_28 . repeat_region 247428 247496 . ? . description=dust scaffold_28 . biological_region 247681 247683 0.999 + . logic_name=eponine scaffold_28 . biological_region 247721 247721 0.999 - . logic_name=eponine scaffold_28 . biological_region 247797 247801 0.999 + . logic_name=eponine scaffold_28 . biological_region 247905 247911 0.999 - . logic_name=eponine scaffold_28 . repeat_region 247996 248089 . ? . description=dust scaffold_28 . biological_region 248513 248515 0.999 - . logic_name=eponine scaffold_28 . biological_region 248537 248538 0.999 - . logic_name=eponine scaffold_28 . repeat_region 248786 248853 . ? . description=dust scaffold_28 . repeat_region 248957 249017 . ? . description=dust scaffold_28 . biological_region 249275 249277 0.999 - . logic_name=eponine scaffold_28 . biological_region 249722 249727 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 240635 241862 . - . ID=Physo133839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280060;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 240635 241862 . - . ID=Physo133839;Parent=Physo133839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 240635 240753 . - 0 ID=Physo133839;Parent=Physo133839;rank=5 scaffold_28 . exon 240635 240753 . - . ID=Physo133839.5;Parent=Physo133839;constitutive=1;ensembl_phase=1;rank=5 scaffold_28 . CDS 240792 241253 . - 0 ID=Physo133839;Parent=Physo133839;rank=4 scaffold_28 . exon 240792 241253 . - . ID=Physo133839.4;Parent=Physo133839;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_28 . CDS 241287 241423 . - 0 ID=Physo133839;Parent=Physo133839;rank=3 scaffold_28 . exon 241287 241423 . - . ID=Physo133839.3;Parent=Physo133839;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 241568 241656 . - 0 ID=Physo133839;Parent=Physo133839;rank=2 scaffold_28 . exon 241568 241656 . - . ID=Physo133839.2;Parent=Physo133839;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 241737 241862 . - 0 ID=Physo133839;Parent=Physo133839;rank=1 scaffold_28 . exon 241737 241862 . - . ID=Physo133839.1;Parent=Physo133839;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 247219 249244 . + . ID=Physo133840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280061;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 247219 249244 . + . ID=Physo133840;Parent=Physo133840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 247219 247747 . + 0 ID=Physo133840;Parent=Physo133840;rank=1 scaffold_28 . exon 247219 247747 . + . ID=Physo133840.1;Parent=Physo133840;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 247828 247930 . + 0 ID=Physo133840;Parent=Physo133840;rank=2 scaffold_28 . exon 247828 247930 . + . ID=Physo133840.2;Parent=Physo133840;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_28 . CDS 248327 248537 . + 0 ID=Physo133840;Parent=Physo133840;rank=3 scaffold_28 . exon 248327 248537 . + . ID=Physo133840.3;Parent=Physo133840;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 248627 249244 . + 0 ID=Physo133840;Parent=Physo133840;rank=4 scaffold_28 . exon 248627 249244 . + . ID=Physo133840.4;Parent=Physo133840;constitutive=1;rank=4 scaffold_28 . repeat_region 251800 251819 . ? . description=trf scaffold_28 . repeat_region 253406 253470 . ? . description=trf scaffold_28 . repeat_region 253595 253618 . ? . description=trf scaffold_28 . repeat_region 256831 256886 . ? . description=trf scaffold_28 ensembl protein_coding_gene 251955 253723 . + . ID=Physo133841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280062;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 251955 253723 . + . ID=Physo133841;Parent=Physo133841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 251955 252287 . + 0 ID=Physo133841;Parent=Physo133841;rank=1 scaffold_28 . exon 251955 252287 . + . ID=Physo133841.1;Parent=Physo133841;constitutive=1;rank=1 scaffold_28 . CDS 252357 252662 . + 0 ID=Physo133841;Parent=Physo133841;rank=2 scaffold_28 . exon 252357 252662 . + . ID=Physo133841.2;Parent=Physo133841;constitutive=1;rank=2 scaffold_28 . CDS 252738 252950 . + 0 ID=Physo133841;Parent=Physo133841;rank=3 scaffold_28 . exon 252738 252950 . + . ID=Physo133841.3;Parent=Physo133841;constitutive=1;rank=3 scaffold_28 . CDS 253340 253723 . + 0 ID=Physo133841;Parent=Physo133841;rank=4 scaffold_28 . exon 253340 253723 . + . ID=Physo133841.4;Parent=Physo133841;constitutive=1;rank=4 scaffold_28 ensembl protein_coding_gene 254851 255312 . + . ID=Physo133842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280063;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 254851 255312 . + . ID=Physo133842;Parent=Physo133842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 254851 255312 . + 0 ID=Physo133842;Parent=Physo133842;rank=1 scaffold_28 . exon 254851 255312 . + . ID=Physo133842.1;Parent=Physo133842;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 258584 260055 . + . ID=Physo133843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280064;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 258584 260055 . + . ID=Physo133843;Parent=Physo133843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 258584 258685 . + 0 ID=Physo133843;Parent=Physo133843;rank=1 scaffold_28 . exon 258584 258685 . + . ID=Physo133843.1;Parent=Physo133843;constitutive=1;rank=1 scaffold_28 . CDS 258734 259529 . + 0 ID=Physo133843;Parent=Physo133843;rank=2 scaffold_28 . exon 258734 259529 . + . ID=Physo133843.2;Parent=Physo133843;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 259559 259881 . + 0 ID=Physo133843;Parent=Physo133843;rank=3 scaffold_28 . exon 259559 260055 . + . ID=Physo133843.3;Parent=Physo133843;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_28 . repeat_region 266106 266155 . ? . description=dust scaffold_28 . repeat_region 266375 266383 . ? . description=dust scaffold_28 . repeat_region 266719 266731 . ? . description=dust scaffold_28 ensembl protein_coding_gene 260157 261453 . - . ID=Physo133844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280065;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 260157 261453 . - . ID=Physo133844;Parent=Physo133844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 260157 260426 . - 0 ID=Physo133844;Parent=Physo133844;rank=3 scaffold_28 . exon 260157 260426 . - . ID=Physo133844.3;Parent=Physo133844;constitutive=1;rank=3 scaffold_28 . CDS 260782 261145 . - 0 ID=Physo133844;Parent=Physo133844;rank=2 scaffold_28 . exon 260782 261145 . - . ID=Physo133844.2;Parent=Physo133844;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 261203 261453 . - 0 ID=Physo133844;Parent=Physo133844;rank=1 scaffold_28 . exon 261203 261453 . - . ID=Physo133844.1;Parent=Physo133844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 263276 264370 . + . ID=Physo133845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280066;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 263276 264370 . + . ID=Physo133845;Parent=Physo133845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 263276 263454 . + 0 ID=Physo133845;Parent=Physo133845;rank=1 scaffold_28 . exon 263276 263454 . + . ID=Physo133845.1;Parent=Physo133845;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 263836 264370 . + 0 ID=Physo133845;Parent=Physo133845;rank=2 scaffold_28 . exon 263836 264370 . + . ID=Physo133845.2;Parent=Physo133845;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 ensembl protein_coding_gene 264711 265731 . + . ID=Physo133846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280067;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 264711 265731 . + . ID=Physo133846;Parent=Physo133846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 264711 264800 . + 0 ID=Physo133846;Parent=Physo133846;rank=1 scaffold_28 . exon 264711 264800 . + . ID=Physo133846.1;Parent=Physo133846;constitutive=1;rank=1 scaffold_28 . CDS 265197 265326 . + 0 ID=Physo133846;Parent=Physo133846;rank=2 scaffold_28 . exon 265197 265326 . + . ID=Physo133846.2;Parent=Physo133846;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 265370 265731 . + 0 ID=Physo133846;Parent=Physo133846;rank=3 scaffold_28 . exon 265370 265731 . + . ID=Physo133846.3;Parent=Physo133846;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 ensembl protein_coding_gene 269214 269954 . - . ID=Physo133847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280068;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 269214 269954 . - . ID=Physo133847;Parent=Physo133847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 269214 269954 . - 0 ID=Physo133847;Parent=Physo133847;rank=1 scaffold_28 . exon 269214 269954 . - . ID=Physo133847.1;Parent=Physo133847;constitutive=1;rank=1 scaffold_28 . biological_region 274066 274071 0.999 - . logic_name=eponine scaffold_28 . biological_region 274124 274127 0.999 + . logic_name=eponine scaffold_28 . repeat_region 277039 277059 . ? . description=trf scaffold_28 . biological_region 277270 277271 0.999 + . logic_name=eponine scaffold_28 . biological_region 277908 277913 0.999 + . logic_name=eponine scaffold_28 . repeat_region 278058 278185 . ? . description=trf scaffold_28 ensembl protein_coding_gene 272062 273060 . - . ID=Physo133848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280069;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 272062 273060 . - . ID=Physo133848;Parent=Physo133848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 272062 272592 . - 0 ID=Physo133848;Parent=Physo133848;rank=3 scaffold_28 . exon 272062 272592 . - . ID=Physo133848.3;Parent=Physo133848;constitutive=1;rank=3 scaffold_28 . CDS 272671 272752 . - 0 ID=Physo133848;Parent=Physo133848;rank=2 scaffold_28 . exon 272671 272752 . - . ID=Physo133848.2;Parent=Physo133848;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 272822 273060 . - 0 ID=Physo133848;Parent=Physo133848;rank=1 scaffold_28 . exon 272822 273060 . - . ID=Physo133848.1;Parent=Physo133848;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 273591 275866 . + . ID=Physo133849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280070;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 273591 275866 . + . ID=Physo133849;Parent=Physo133849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 273591 273716 . + 0 ID=Physo133849;Parent=Physo133849;rank=1 scaffold_28 . exon 273591 273716 . + . ID=Physo133849.1;Parent=Physo133849;constitutive=1;rank=1 scaffold_28 . CDS 273888 275668 . + 0 ID=Physo133849;Parent=Physo133849;rank=2 scaffold_28 . exon 273888 275668 . + . ID=Physo133849.2;Parent=Physo133849;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 275818 275866 . + 0 ID=Physo133849;Parent=Physo133849;rank=3 scaffold_28 . exon 275818 275866 . + . ID=Physo133849.3;Parent=Physo133849;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 ensembl protein_coding_gene 277069 277575 . + . ID=Physo133850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280071;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 277069 277575 . + . ID=Physo133850;Parent=Physo133850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 277069 277575 . + 0 ID=Physo133850;Parent=Physo133850;rank=1 scaffold_28 . exon 277069 277575 . + . ID=Physo133850.1;Parent=Physo133850;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 277895 278467 . - . ID=Physo133851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280072;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 277895 278467 . - . ID=Physo133851;Parent=Physo133851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 277895 278467 . - 0 ID=Physo133851;Parent=Physo133851;rank=1 scaffold_28 . exon 277895 278467 . - . ID=Physo133851.1;Parent=Physo133851;constitutive=1;rank=1 scaffold_28 . repeat_region 281005 281015 . ? . description=dust scaffold_28 . repeat_region 283225 283233 . ? . description=dust scaffold_28 . repeat_region 283325 283507 . ? . description=dust scaffold_28 . repeat_region 283608 283618 . ? . description=dust scaffold_28 . repeat_region 286529 286538 . ? . description=dust scaffold_28 . repeat_region 289192 289201 . ? . description=dust scaffold_28 ensembl protein_coding_gene 279878 280450 . + . ID=Physo133852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280073;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 279878 280450 . + . ID=Physo133852;Parent=Physo133852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 279878 280450 . + 0 ID=Physo133852;Parent=Physo133852;rank=1 scaffold_28 . exon 279878 280450 . + . ID=Physo133852.1;Parent=Physo133852;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 281304 282651 . - . ID=Physo133853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280074;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 281304 282651 . - . ID=Physo133853;Parent=Physo133853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 281304 281444 . - 0 ID=Physo133853;Parent=Physo133853;rank=6 scaffold_28 . exon 281304 281444 . - . ID=Physo133853.6;Parent=Physo133853;constitutive=1;rank=6 scaffold_28 . CDS 281470 281605 . - 0 ID=Physo133853;Parent=Physo133853;rank=5 scaffold_28 . exon 281470 281605 . - . ID=Physo133853.5;Parent=Physo133853;constitutive=1;ensembl_phase=2;rank=5 scaffold_28 . CDS 281673 281846 . - 0 ID=Physo133853;Parent=Physo133853;rank=4 scaffold_28 . exon 281673 281846 . - . ID=Physo133853.4;Parent=Physo133853;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_28 . CDS 281882 282345 . - 0 ID=Physo133853;Parent=Physo133853;rank=3 scaffold_28 . exon 281882 282345 . - . ID=Physo133853.3;Parent=Physo133853;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_28 . CDS 282376 282474 . - 0 ID=Physo133853;Parent=Physo133853;rank=2 scaffold_28 . exon 282376 282474 . - . ID=Physo133853.2;Parent=Physo133853;constitutive=1;rank=2 scaffold_28 . CDS 282649 282651 . - 0 ID=Physo133853;Parent=Physo133853;rank=1 scaffold_28 . exon 282649 282651 . - . ID=Physo133853.1;Parent=Physo133853;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 284173 284745 . - . ID=Physo133854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280075;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 284173 284745 . - . ID=Physo133854;Parent=Physo133854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 284173 284745 . - 0 ID=Physo133854;Parent=Physo133854;rank=1 scaffold_28 . exon 284173 284745 . - . ID=Physo133854.1;Parent=Physo133854;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 286624 287196 . - . ID=Physo133855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280076;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 286624 287196 . - . ID=Physo133855;Parent=Physo133855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 286624 287196 . - 0 ID=Physo133855;Parent=Physo133855;rank=1 scaffold_28 . exon 286624 287196 . - . ID=Physo133855.1;Parent=Physo133855;constitutive=1;rank=1 scaffold_28 . repeat_region 292983 293062 . ? . description=trf scaffold_28 . repeat_region 294656 294721 . ? . description=trf scaffold_28 . repeat_region 296362 296578 . ? . description=trf scaffold_28 . biological_region 300464 300471 0.999 + . logic_name=eponine scaffold_28 . biological_region 303706 303711 0.999 - . logic_name=eponine scaffold_28 . biological_region 304083 304087 0.999 + . logic_name=eponine scaffold_28 . repeat_region 309566 309615 . ? . description=dust scaffold_28 ensembl protein_coding_gene 303458 304606 . - . ID=Physo133856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280077;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 303458 304606 . - . ID=Physo133856;Parent=Physo133856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 303458 304606 . - 0 ID=Physo133856;Parent=Physo133856;rank=1 scaffold_28 . exon 303458 304606 . - . ID=Physo133856.1;Parent=Physo133856;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 306798 308572 . + . ID=Physo133857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280078;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 306798 308572 . + . ID=Physo133857;Parent=Physo133857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 306798 307143 . + 0 ID=Physo133857;Parent=Physo133857;rank=1 scaffold_28 . exon 306798 307143 . + . ID=Physo133857.1;Parent=Physo133857;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 307188 307261 . + 0 ID=Physo133857;Parent=Physo133857;rank=2 scaffold_28 . exon 307188 307261 . + . ID=Physo133857.2;Parent=Physo133857;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 307623 307776 . + 0 ID=Physo133857;Parent=Physo133857;rank=3 scaffold_28 . exon 307623 307776 . + . ID=Physo133857.3;Parent=Physo133857;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_28 . CDS 307856 308280 . + 0 ID=Physo133857;Parent=Physo133857;rank=4 scaffold_28 . exon 307856 308280 . + . ID=Physo133857.4;Parent=Physo133857;constitutive=1;ensembl_phase=1;rank=4 scaffold_28 . CDS 308381 308572 . + 0 ID=Physo133857;Parent=Physo133857;rank=5 scaffold_28 . exon 308381 308572 . + . ID=Physo133857.5;Parent=Physo133857;constitutive=1;rank=5 scaffold_28 ensembl protein_coding_gene 309996 320210 . + . ID=Physo133858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280079;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 309996 320210 . + . ID=Physo133858;Parent=Physo133858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 309996 310038 . + 0 ID=Physo133858;Parent=Physo133858;rank=1 scaffold_28 . exon 309996 310038 . + . ID=Physo133858.1;Parent=Physo133858;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 310183 310719 . + 0 ID=Physo133858;Parent=Physo133858;rank=2 scaffold_28 . exon 310183 310719 . + . ID=Physo133858.2;Parent=Physo133858;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 310764 310837 . + 0 ID=Physo133858;Parent=Physo133858;rank=3 scaffold_28 . exon 310764 310837 . + . ID=Physo133858.3;Parent=Physo133858;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 311199 311352 . + 0 ID=Physo133858;Parent=Physo133858;rank=4 scaffold_28 . exon 311199 311352 . + . ID=Physo133858.4;Parent=Physo133858;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_28 . CDS 311595 311649 . + 0 ID=Physo133858;Parent=Physo133858;rank=5 scaffold_28 . exon 311595 311649 . + . ID=Physo133858.5;Parent=Physo133858;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_28 . CDS 312241 312965 . + 0 ID=Physo133858;Parent=Physo133858;rank=6 scaffold_28 . exon 312241 312965 . + . ID=Physo133858.6;Parent=Physo133858;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_28 . CDS 313077 313804 . + 0 ID=Physo133858;Parent=Physo133858;rank=7 scaffold_28 . exon 313077 313804 . + . ID=Physo133858.7;Parent=Physo133858;constitutive=1;ensembl_phase=1;rank=7 scaffold_28 . CDS 313924 314292 . + 0 ID=Physo133858;Parent=Physo133858;rank=8 scaffold_28 . exon 313924 314292 . + . ID=Physo133858.8;Parent=Physo133858;constitutive=1;rank=8 scaffold_28 . CDS 314710 315382 . + 0 ID=Physo133858;Parent=Physo133858;rank=9 scaffold_28 . exon 314710 315382 . + . ID=Physo133858.9;Parent=Physo133858;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_28 . CDS 315456 315804 . + 0 ID=Physo133858;Parent=Physo133858;rank=10 scaffold_28 . exon 315456 315804 . + . ID=Physo133858.10;Parent=Physo133858;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_28 . CDS 315883 316141 . + 0 ID=Physo133858;Parent=Physo133858;rank=11 scaffold_28 . exon 315883 316141 . + . ID=Physo133858.11;Parent=Physo133858;constitutive=1;ensembl_phase=2;rank=11 scaffold_28 . CDS 316277 316815 . + 0 ID=Physo133858;Parent=Physo133858;rank=12 scaffold_28 . exon 316277 316815 . + . ID=Physo133858.12;Parent=Physo133858;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_28 . CDS 317637 318264 . + 0 ID=Physo133858;Parent=Physo133858;rank=13 scaffold_28 . exon 317637 318264 . + . ID=Physo133858.13;Parent=Physo133858;constitutive=1;ensembl_phase=2;rank=13 scaffold_28 . CDS 318286 319473 . + 0 ID=Physo133858;Parent=Physo133858;rank=14 scaffold_28 . exon 318286 319473 . + . ID=Physo133858.14;Parent=Physo133858;constitutive=1;rank=14 scaffold_28 . CDS 319638 319823 . + 0 ID=Physo133858;Parent=Physo133858;rank=15 scaffold_28 . exon 319638 319823 . + . ID=Physo133858.15;Parent=Physo133858;constitutive=1;rank=15 scaffold_28 . CDS 319914 320210 . + 0 ID=Physo133858;Parent=Physo133858;rank=16 scaffold_28 . biological_region 323287 323290 0.999 - . logic_name=eponine scaffold_28 . biological_region 323663 323666 0.999 + . logic_name=eponine scaffold_28 . biological_region 324643 324643 0.999 - . logic_name=eponine scaffold_28 . repeat_region 329728 329739 . ? . description=dust scaffold_28 ensembl protein_coding_gene 320313 321293 . + . ID=Physo108734;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_280004;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 320313 321293 . + . ID=Physo108734;Parent=Physo108734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 320313 321293 . + 0 ID=Physo108734;Parent=Physo108734;rank=1 scaffold_28 . exon 320313 321293 . + . ID=Physo108734.1;Parent=Physo108734;constitutive=1;rank=1 scaffold_28 . exon 319914 320210 . + . ID=Physo133858.16;Parent=Physo133858;constitutive=1;rank=16 scaffold_28 ensembl protein_coding_gene 322766 324989 . + . ID=Physo133860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280081;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 322766 324989 . + . ID=Physo133860;Parent=Physo133860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 322766 323878 . + 0 ID=Physo133860;Parent=Physo133860;rank=1 scaffold_28 . exon 322766 323878 . + . ID=Physo133860.1;Parent=Physo133860;constitutive=1;rank=1 scaffold_28 . CDS 324310 324310 . + 0 ID=Physo133860;Parent=Physo133860;rank=2 scaffold_28 . exon 324310 324310 . + . ID=Physo133860.2;Parent=Physo133860;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 324595 324989 . + 0 ID=Physo133860;Parent=Physo133860;rank=3 scaffold_28 . exon 324595 324989 . + . ID=Physo133860.3;Parent=Physo133860;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 . repeat_region 335299 335336 . ? . description=trf scaffold_28 ensembl protein_coding_gene 330094 333292 . + . ID=Physo133861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280082;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 330094 333292 . + . ID=Physo133861;Parent=Physo133861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 330094 330274 . + 0 ID=Physo133861;Parent=Physo133861;rank=1 scaffold_28 . exon 330094 330274 . + . ID=Physo133861.1;Parent=Physo133861;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 330346 330442 . + 0 ID=Physo133861;Parent=Physo133861;rank=2 scaffold_28 . exon 330346 330442 . + . ID=Physo133861.2;Parent=Physo133861;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_28 . CDS 330643 330698 . + 0 ID=Physo133861;Parent=Physo133861;rank=3 scaffold_28 . exon 330643 330698 . + . ID=Physo133861.3;Parent=Physo133861;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 330960 331139 . + 0 ID=Physo133861;Parent=Physo133861;rank=4 scaffold_28 . exon 330960 331139 . + . ID=Physo133861.4;Parent=Physo133861;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_28 . CDS 331403 332237 . + 0 ID=Physo133861;Parent=Physo133861;rank=5 scaffold_28 . exon 331403 332237 . + . ID=Physo133861.5;Parent=Physo133861;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_28 . CDS 332332 332407 . + 0 ID=Physo133861;Parent=Physo133861;rank=6 scaffold_28 . exon 332332 332407 . + . ID=Physo133861.6;Parent=Physo133861;constitutive=1;ensembl_phase=2;rank=6 scaffold_28 . CDS 332429 332874 . + 0 ID=Physo133861;Parent=Physo133861;rank=7 scaffold_28 . exon 332429 332874 . + . ID=Physo133861.7;Parent=Physo133861;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_28 . CDS 332947 333292 . + 0 ID=Physo133861;Parent=Physo133861;rank=8 scaffold_28 . exon 332947 333292 . + . ID=Physo133861.8;Parent=Physo133861;constitutive=1;ensembl_phase=2;rank=8 scaffold_28 ensembl protein_coding_gene 334282 335145 . + . ID=Physo133862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280083;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 334282 335145 . + . ID=Physo133862;Parent=Physo133862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 334282 335145 . + 0 ID=Physo133862;Parent=Physo133862;rank=1 scaffold_28 . exon 334282 335145 . + . ID=Physo133862.1;Parent=Physo133862;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 335466 335987 . + . ID=Physo133863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280084;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 335466 335987 . + . ID=Physo133863;Parent=Physo133863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 335466 335987 . + 0 ID=Physo133863;Parent=Physo133863;rank=1 scaffold_28 . exon 335466 335987 . + . ID=Physo133863.1;Parent=Physo133863;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 336125 336598 . - . ID=Physo133864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280085;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 336125 336598 . - . ID=Physo133864;Parent=Physo133864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 336125 336598 . - 0 ID=Physo133864;Parent=Physo133864;rank=1 scaffold_28 . exon 336125 336598 . - . ID=Physo133864.1;Parent=Physo133864;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 337458 342374 . + . ID=Physo133865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280086;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 337458 342374 . + . ID=Physo133865;Parent=Physo133865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 337458 342374 . + 0 ID=Physo133865;Parent=Physo133865;rank=1 scaffold_28 . exon 337458 342374 . + . ID=Physo133865.1;Parent=Physo133865;constitutive=1;rank=1 scaffold_28 . biological_region 341491 341492 0.999 + . logic_name=eponine scaffold_28 . biological_region 342163 342165 0.999 - . logic_name=eponine scaffold_28 . repeat_region 343467 343506 . ? . description=dust scaffold_28 . biological_region 343638 343641 0.999 + . logic_name=eponine scaffold_28 . biological_region 343765 343772 0.999 - . logic_name=eponine scaffold_28 . biological_region 343786 343794 0.999 - . logic_name=eponine scaffold_28 . biological_region 343845 343849 0.999 + . logic_name=eponine scaffold_28 . biological_region 345214 345220 0.999 - . logic_name=eponine scaffold_28 . repeat_region 346953 346976 . ? . description=dust scaffold_28 . biological_region 347568 347568 0.999 + . logic_name=eponine scaffold_28 . biological_region 348667 348673 0.999 - . logic_name=eponine scaffold_28 . biological_region 348944 348948 0.999 - . logic_name=eponine scaffold_28 . repeat_region 349458 349483 . ? . description=dust scaffold_28 ensembl protein_coding_gene 343534 345558 . + . ID=Physo133866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280087;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 343534 345558 . + . ID=Physo133866;Parent=Physo133866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 343534 345558 . + 0 ID=Physo133866;Parent=Physo133866;rank=1 scaffold_28 . exon 343534 345558 . + . ID=Physo133866.1;Parent=Physo133866;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 346841 349065 . + . ID=Physo133867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280088;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 346841 349065 . + . ID=Physo133867;Parent=Physo133867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 346841 346889 . + 0 ID=Physo133867;Parent=Physo133867;rank=1 scaffold_28 . exon 346841 346889 . + . ID=Physo133867.1;Parent=Physo133867;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 346982 347047 . + 0 ID=Physo133867;Parent=Physo133867;rank=2 scaffold_28 . exon 346982 347047 . + . ID=Physo133867.2;Parent=Physo133867;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 347186 349065 . + 0 ID=Physo133867;Parent=Physo133867;rank=3 scaffold_28 . exon 347186 349065 . + . ID=Physo133867.3;Parent=Physo133867;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 ensembl protein_coding_gene 349518 350585 . - . ID=Physo133868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280089;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 349518 350585 . - . ID=Physo133868;Parent=Physo133868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 349518 350126 . - 0 ID=Physo133868;Parent=Physo133868;rank=2 scaffold_28 . exon 349518 350126 . - . ID=Physo133868.2;Parent=Physo133868;constitutive=1;rank=2 scaffold_28 . CDS 350211 350585 . - 0 ID=Physo133868;Parent=Physo133868;rank=1 scaffold_28 . repeat_region 352320 352405 . - . description=GypsyPi-1c_I-int scaffold_28 . repeat_region 352942 358984 . - . description=Sola3-3_PS scaffold_28 . exon 350211 350585 . - . ID=Physo133868.1;Parent=Physo133868;constitutive=1;rank=1 scaffold_28 . repeat_region 366117 366395 . ? . description=dust scaffold_28 . biological_region 368676 368677 0.999 + . logic_name=eponine scaffold_28 . biological_region 368760 368762 0.999 - . logic_name=eponine scaffold_28 . biological_region 369312 369314 0.999 + . logic_name=eponine scaffold_28 . repeat_region 369441 369480 . ? . description=trf scaffold_28 . biological_region 369697 369701 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 366887 367199 . + . ID=Physo108736;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_280006;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 366887 367199 . + . ID=Physo108736;Parent=Physo108736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 366887 367164 . + 0 ID=Physo108736;Parent=Physo108736;rank=1 scaffold_28 . exon 366887 367164 . + . ID=Physo108736.1;Parent=Physo108736;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 367184 367199 . + 0 ID=Physo108736;Parent=Physo108736;rank=2 scaffold_28 . exon 367184 367199 . + . ID=Physo108736.2;Parent=Physo108736;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 ensembl protein_coding_gene 367452 368118 . + . ID=Physo115686;biotype=protein_coding;external_name=estExt_Genewise1.C_280008;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 367452 368118 . + . ID=Physo115686;Parent=Physo115686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 367452 367636 . + . ID=Physo115686.1;Parent=Physo115686;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_28 . CDS 367476 367636 . + 0 ID=Physo115686;Parent=Physo115686;rank=1 scaffold_28 . CDS 367826 368012 . + 0 ID=Physo115686;Parent=Physo115686;rank=2 scaffold_28 . exon 367826 368118 . + . ID=Physo115686.2;Parent=Physo115686;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_28 ensembl protein_coding_gene 363792 364741 . + . ID=Physo133869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280090;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 363792 364741 . + . ID=Physo133869;Parent=Physo133869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 363792 364052 . + 0 ID=Physo133869;Parent=Physo133869;rank=1 scaffold_28 . exon 363792 364052 . + . ID=Physo133869.1;Parent=Physo133869;constitutive=1;rank=1 scaffold_28 . CDS 364103 364251 . + 0 ID=Physo133869;Parent=Physo133869;rank=2 scaffold_28 . exon 364103 364251 . + . ID=Physo133869.2;Parent=Physo133869;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 364327 364741 . + 0 ID=Physo133869;Parent=Physo133869;rank=3 scaffold_28 . exon 364327 364741 . + . ID=Physo133869.3;Parent=Physo133869;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 ensembl protein_coding_gene 376226 378634 . + . ID=Physo133873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280094;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 376226 378634 . + . ID=Physo133873;Parent=Physo133873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 376226 376924 . + 0 ID=Physo133873;Parent=Physo133873;rank=1 scaffold_28 . exon 376226 376924 . + . ID=Physo133873.1;Parent=Physo133873;constitutive=1;rank=1 scaffold_28 . CDS 376988 377137 . + 0 ID=Physo133873;Parent=Physo133873;rank=2 scaffold_28 . exon 376988 377137 . + . ID=Physo133873.2;Parent=Physo133873;constitutive=1;rank=2 scaffold_28 . CDS 377174 377460 . + 0 ID=Physo133873;Parent=Physo133873;rank=3 scaffold_28 . exon 377174 377460 . + . ID=Physo133873.3;Parent=Physo133873;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_28 . CDS 377550 377841 . + 0 ID=Physo133873;Parent=Physo133873;rank=4 scaffold_28 . exon 377550 377841 . + . ID=Physo133873.4;Parent=Physo133873;constitutive=1;ensembl_phase=2;rank=4 scaffold_28 . CDS 377891 378049 . + 0 ID=Physo133873;Parent=Physo133873;rank=5 scaffold_28 . exon 377891 378049 . + . ID=Physo133873.5;Parent=Physo133873;constitutive=1;rank=5 scaffold_28 . CDS 378164 378634 . + 0 ID=Physo133873;Parent=Physo133873;rank=6 scaffold_28 . exon 378164 378634 . + . ID=Physo133873.6;Parent=Physo133873;constitutive=1;rank=6 scaffold_28 . biological_region 381091 381091 0.999 - . logic_name=eponine scaffold_28 . repeat_region 381125 381135 . ? . description=dust scaffold_28 . repeat_region 382574 382581 . ? . description=dust scaffold_28 . repeat_region 388039 388071 . ? . description=trf scaffold_28 . repeat_region 389135 389142 . ? . description=dust scaffold_28 ensembl protein_coding_gene 385411 386409 . - . ID=Physo133874;biotype=protein_coding;description=PsAvh156 [Source:UniProtKB/TrEMBL%3BAcc:E0W4X9];external_name=estExt_fgenesh1_pg.C_280095;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 385411 386409 . - . ID=Physo133874;Parent=Physo133874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 385411 386409 . - 0 ID=Physo133874;Parent=Physo133874;rank=1 scaffold_28 . exon 385411 386409 . - . ID=Physo133874.1;Parent=Physo133874;constitutive=1;rank=1 scaffold_28 . repeat_region 397515 399176 . - . description=Sola3-2_PS scaffold_28 ensembl protein_coding_gene 391952 392626 . - . ID=Physo133875;biotype=protein_coding;description=PsAvh167 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Y0];external_name=estExt_fgenesh1_pg.C_280096;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 391952 392626 . - . ID=Physo133875;Parent=Physo133875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 391952 392626 . - 0 ID=Physo133875;Parent=Physo133875;rank=1 scaffold_28 . exon 391952 392626 . - . ID=Physo133875.1;Parent=Physo133875;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 395508 396215 . - . ID=Physo133876;biotype=protein_coding;description=PsAvh162 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Y1];external_name=estExt_fgenesh1_pg.C_280097;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 395508 396215 . - . ID=Physo133876;Parent=Physo133876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 395508 396215 . - 0 ID=Physo133876;Parent=Physo133876;rank=1 scaffold_28 . exon 395508 396215 . - . ID=Physo133876.1;Parent=Physo133876;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 397959 399171 . - . ID=Physo133877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280098;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 397959 399171 . - . ID=Physo133877;Parent=Physo133877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 397959 398103 . - 0 ID=Physo133877;Parent=Physo133877;rank=4 scaffold_28 . exon 397959 398103 . - . ID=Physo133877.4;Parent=Physo133877;constitutive=1;ensembl_phase=2;rank=4 scaffold_28 . CDS 398148 398623 . - 0 ID=Physo133877;Parent=Physo133877;rank=3 scaffold_28 . exon 398148 398623 . - . ID=Physo133877.3;Parent=Physo133877;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_28 . CDS 398694 398954 . - 0 ID=Physo133877;Parent=Physo133877;rank=2 scaffold_28 . exon 398694 398954 . - . ID=Physo133877.2;Parent=Physo133877;constitutive=1;rank=2 scaffold_28 . CDS 399034 399171 . - 0 ID=Physo133877;Parent=Physo133877;rank=1 scaffold_28 . exon 399034 399171 . - . ID=Physo133877.1;Parent=Physo133877;constitutive=1;rank=1 scaffold_28 . biological_region 400132 400135 0.999 - . logic_name=eponine scaffold_28 . biological_region 400952 400955 0.999 + . logic_name=eponine scaffold_28 . repeat_region 405846 405866 . ? . description=trf scaffold_28 ensembl protein_coding_gene 399884 401239 . + . ID=Physo133878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280099;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 399884 401239 . + . ID=Physo133878;Parent=Physo133878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 399884 400234 . + 0 ID=Physo133878;Parent=Physo133878;rank=1 scaffold_28 . exon 399884 400234 . + . ID=Physo133878.1;Parent=Physo133878;constitutive=1;rank=1 scaffold_28 . CDS 400313 400363 . + 0 ID=Physo133878;Parent=Physo133878;rank=2 scaffold_28 . exon 400313 400363 . + . ID=Physo133878.2;Parent=Physo133878;constitutive=1;rank=2 scaffold_28 . CDS 400506 400764 . + 0 ID=Physo133878;Parent=Physo133878;rank=3 scaffold_28 . exon 400506 400764 . + . ID=Physo133878.3;Parent=Physo133878;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_28 . CDS 400836 401239 . + 0 ID=Physo133878;Parent=Physo133878;rank=4 scaffold_28 . exon 400836 401239 . + . ID=Physo133878.4;Parent=Physo133878;constitutive=1;ensembl_phase=1;rank=4 scaffold_28 ensembl protein_coding_gene 401647 401982 . - . ID=Physo133879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280100;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 401647 401982 . - . ID=Physo133879;Parent=Physo133879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 401647 401982 . - 0 ID=Physo133879;Parent=Physo133879;rank=1 scaffold_28 . exon 401647 401982 . - . ID=Physo133879.1;Parent=Physo133879;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 408754 414145 . + . ID=Physo133880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280101;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 408754 414145 . + . ID=Physo133880;Parent=Physo133880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 408754 409252 . + 0 ID=Physo133880;Parent=Physo133880;rank=1 scaffold_28 . exon 408754 409252 . + . ID=Physo133880.1;Parent=Physo133880;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 409726 410102 . + 0 ID=Physo133880;Parent=Physo133880;rank=2 scaffold_28 . CDS 410574 411212 . + 0 ID=Physo133880;Parent=Physo133880;rank=3 scaffold_28 . CDS 411262 411354 . + 0 ID=Physo133880;Parent=Physo133880;rank=4 scaffold_28 . CDS 411402 411629 . + 0 ID=Physo133880;Parent=Physo133880;rank=5 scaffold_28 . CDS 411812 412245 . + 0 ID=Physo133880;Parent=Physo133880;rank=6 scaffold_28 . CDS 412339 412481 . + 0 ID=Physo133880;Parent=Physo133880;rank=7 scaffold_28 . CDS 412572 412991 . + 0 ID=Physo133880;Parent=Physo133880;rank=8 scaffold_28 . CDS 413169 413583 . + 0 ID=Physo133880;Parent=Physo133880;rank=9 scaffold_28 . CDS 413710 414145 . + 0 ID=Physo133880;Parent=Physo133880;rank=10 scaffold_28 . exon 409726 410102 . + . ID=Physo133880.2;Parent=Physo133880;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . exon 410574 411212 . + . ID=Physo133880.3;Parent=Physo133880;constitutive=1;rank=3 scaffold_28 . exon 411262 411354 . + . ID=Physo133880.4;Parent=Physo133880;constitutive=1;rank=4 scaffold_28 . exon 411402 411629 . + . ID=Physo133880.5;Parent=Physo133880;constitutive=1;rank=5 scaffold_28 . exon 411812 412245 . + . ID=Physo133880.6;Parent=Physo133880;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_28 . exon 412339 412481 . + . ID=Physo133880.7;Parent=Physo133880;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_28 . exon 412572 412991 . + . ID=Physo133880.8;Parent=Physo133880;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_28 . exon 413169 413583 . + . ID=Physo133880.9;Parent=Physo133880;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_28 . exon 413710 414145 . + . ID=Physo133880.10;Parent=Physo133880;constitutive=1;ensembl_phase=2;rank=10 scaffold_28 . biological_region 425649 425650 0.999 - . logic_name=eponine scaffold_28 . repeat_region 429641 429653 . ? . description=dust scaffold_28 . repeat_region 434706 434726 . ? . description=trf scaffold_28 . repeat_region 441005 441020 . ? . description=dust scaffold_28 . repeat_region 441503 441519 . ? . description=dust scaffold_28 . biological_region 442663 442664 0.999 + . logic_name=eponine scaffold_28 . biological_region 443414 443419 0.999 - . logic_name=eponine scaffold_28 . biological_region 443509 443514 0.999 - . logic_name=eponine scaffold_28 . repeat_region 446966 446983 . ? . description=dust scaffold_28 . biological_region 447024 447026 0.999 + . logic_name=eponine scaffold_28 . repeat_region 447324 447332 . ? . description=dust scaffold_28 . repeat_region 448080 448090 . ? . description=dust scaffold_28 . biological_region 448763 448765 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 449573 450895 . + . ID=Physo133881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280102;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 449573 450895 . + . ID=Physo133881;Parent=Physo133881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 449573 449960 . + 0 ID=Physo133881;Parent=Physo133881;rank=1 scaffold_28 . exon 449573 449960 . + . ID=Physo133881.1;Parent=Physo133881;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 450132 450379 . + 0 ID=Physo133881;Parent=Physo133881;rank=2 scaffold_28 . CDS 450473 450895 . + 0 ID=Physo133881;Parent=Physo133881;rank=3 scaffold_28 . exon 450132 450379 . + . ID=Physo133881.2;Parent=Physo133881;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . exon 450473 450895 . + . ID=Physo133881.3;Parent=Physo133881;constitutive=1;rank=3 scaffold_28 ensembl protein_coding_gene 451651 452545 . - . ID=Physo133882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280103;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 451651 452545 . - . ID=Physo133882;Parent=Physo133882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 451651 451782 . - 0 ID=Physo133882;Parent=Physo133882;rank=4 scaffold_28 . exon 451651 451782 . - . ID=Physo133882.4;Parent=Physo133882;constitutive=1;rank=4 scaffold_28 . CDS 451805 452044 . - 0 ID=Physo133882;Parent=Physo133882;rank=3 scaffold_28 . exon 451805 452044 . - . ID=Physo133882.3;Parent=Physo133882;constitutive=1;rank=3 scaffold_28 . CDS 452084 452197 . - 0 ID=Physo133882;Parent=Physo133882;rank=2 scaffold_28 . exon 452084 452197 . - . ID=Physo133882.2;Parent=Physo133882;constitutive=1;rank=2 scaffold_28 . CDS 452258 452545 . - 0 ID=Physo133882;Parent=Physo133882;rank=1 scaffold_28 . exon 452258 452545 . - . ID=Physo133882.1;Parent=Physo133882;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 453572 454663 . + . ID=Physo133883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280104;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 453572 454663 . + . ID=Physo133883;Parent=Physo133883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 453572 454102 . + 0 ID=Physo133883;Parent=Physo133883;rank=1 scaffold_28 . exon 453572 454102 . + . ID=Physo133883.1;Parent=Physo133883;constitutive=1;rank=1 scaffold_28 . CDS 454166 454663 . + 0 ID=Physo133883;Parent=Physo133883;rank=2 scaffold_28 . exon 454166 454663 . + . ID=Physo133883.2;Parent=Physo133883;constitutive=1;rank=2 scaffold_28 ensembl protein_coding_gene 454883 455471 . + . ID=Physo133884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280105;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 454883 455471 . + . ID=Physo133884;Parent=Physo133884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 454883 454999 . + 0 ID=Physo133884;Parent=Physo133884;rank=1 scaffold_28 . exon 454883 454999 . + . ID=Physo133884.1;Parent=Physo133884;constitutive=1;rank=1 scaffold_28 . CDS 455233 455411 . + 0 ID=Physo133884;Parent=Physo133884;rank=2 scaffold_28 . exon 455233 455411 . + . ID=Physo133884.2;Parent=Physo133884;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 455447 455471 . + 0 ID=Physo133884;Parent=Physo133884;rank=3 scaffold_28 . exon 455447 455471 . + . ID=Physo133884.3;Parent=Physo133884;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 ensembl protein_coding_gene 458124 460426 . - . ID=Physo133885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280106;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 458124 460426 . - . ID=Physo133885;Parent=Physo133885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 458124 459373 . - 0 ID=Physo133885;Parent=Physo133885;rank=3 scaffold_28 . exon 458124 459373 . - . ID=Physo133885.3;Parent=Physo133885;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 459411 459454 . - 0 ID=Physo133885;Parent=Physo133885;rank=2 scaffold_28 . exon 459411 459454 . - . ID=Physo133885.2;Parent=Physo133885;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 459564 460426 . - 0 ID=Physo133885;Parent=Physo133885;rank=1 scaffold_28 . exon 459564 460426 . - . ID=Physo133885.1;Parent=Physo133885;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . biological_region 463993 463993 0.999 + . logic_name=eponine scaffold_28 . biological_region 464505 464506 0.999 + . logic_name=eponine scaffold_28 . biological_region 464576 464576 0.999 - . logic_name=eponine scaffold_28 . biological_region 464821 464822 0.999 - . logic_name=eponine scaffold_28 . biological_region 465209 465211 0.999 + . logic_name=eponine scaffold_28 . biological_region 467465 467466 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 461335 462174 . + . ID=Physo133886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280107;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 461335 462174 . + . ID=Physo133886;Parent=Physo133886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 461335 462174 . + 0 ID=Physo133886;Parent=Physo133886;rank=1 scaffold_28 . exon 461335 462174 . + . ID=Physo133886.1;Parent=Physo133886;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 464251 464847 . + . ID=Physo133887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280108;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 464251 464847 . + . ID=Physo133887;Parent=Physo133887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 464251 464847 . + 0 ID=Physo133887;Parent=Physo133887;rank=1 scaffold_28 . exon 464251 464847 . + . ID=Physo133887.1;Parent=Physo133887;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 465027 466651 . - . ID=Physo133888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280109;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 465027 466651 . - . ID=Physo133888;Parent=Physo133888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 465027 465898 . - 0 ID=Physo133888;Parent=Physo133888;rank=2 scaffold_28 . exon 465027 465898 . - . ID=Physo133888.2;Parent=Physo133888;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 465958 466651 . - 0 ID=Physo133888;Parent=Physo133888;rank=1 scaffold_28 . exon 465958 466651 . - . ID=Physo133888.1;Parent=Physo133888;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 466864 468509 . - . ID=Physo133889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280110;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 466864 468509 . - . ID=Physo133889;Parent=Physo133889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 466864 467735 . - 0 ID=Physo133889;Parent=Physo133889;rank=2 scaffold_28 . exon 466864 467735 . - . ID=Physo133889.2;Parent=Physo133889;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 467807 468509 . - 0 ID=Physo133889;Parent=Physo133889;rank=1 scaffold_28 . exon 467807 468509 . - . ID=Physo133889.1;Parent=Physo133889;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 468846 470586 . - . ID=Physo133890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280111;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 468846 470586 . - . ID=Physo133890;Parent=Physo133890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 468846 469798 . - . ID=Physo133890.3;Parent=Physo133890;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_28 . CDS 468909 469798 . - 0 ID=Physo133890;Parent=Physo133890;rank=3 scaffold_28 . CDS 469878 470005 . - 0 ID=Physo133890;Parent=Physo133890;rank=2 scaffold_28 . CDS 470063 470586 . - 0 ID=Physo133890;Parent=Physo133890;rank=1 scaffold_28 . repeat_region 471577 471585 . ? . description=dust scaffold_28 . exon 469878 470005 . - . ID=Physo133890.2;Parent=Physo133890;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_28 . exon 470063 470586 . - . ID=Physo133890.1;Parent=Physo133890;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 473276 477811 . - . ID=Physo133891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280112;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 473276 477811 . - . ID=Physo133891;Parent=Physo133891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 473276 473382 . - 0 ID=Physo133891;Parent=Physo133891;rank=7 scaffold_28 . exon 473276 473382 . - . ID=Physo133891.7;Parent=Physo133891;constitutive=1;ensembl_phase=1;rank=7 scaffold_28 . CDS 473518 473544 . - 0 ID=Physo133891;Parent=Physo133891;rank=6 scaffold_28 . exon 473518 473544 . - . ID=Physo133891.6;Parent=Physo133891;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_28 . CDS 473675 474504 . - 0 ID=Physo133891;Parent=Physo133891;rank=5 scaffold_28 . exon 473675 474504 . - . ID=Physo133891.5;Parent=Physo133891;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_28 . CDS 474612 476175 . - 0 ID=Physo133891;Parent=Physo133891;rank=4 scaffold_28 . exon 474612 476175 . - . ID=Physo133891.4;Parent=Physo133891;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_28 . CDS 476286 477353 . - 0 ID=Physo133891;Parent=Physo133891;rank=3 scaffold_28 . exon 476286 477353 . - . ID=Physo133891.3;Parent=Physo133891;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 477446 477623 . - 0 ID=Physo133891;Parent=Physo133891;rank=2 scaffold_28 . exon 477446 477623 . - . ID=Physo133891.2;Parent=Physo133891;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 477713 477811 . - 0 ID=Physo133891;Parent=Physo133891;rank=1 scaffold_28 . exon 477713 477811 . - . ID=Physo133891.1;Parent=Physo133891;constitutive=1;rank=1 scaffold_28 . repeat_region 480569 480605 . ? . description=trf scaffold_28 . repeat_region 483572 483602 . ? . description=trf scaffold_28 . biological_region 485492 485493 0.999 + . logic_name=eponine scaffold_28 . biological_region 485738 485738 0.999 + . logic_name=eponine scaffold_28 . biological_region 485808 485809 0.999 - . logic_name=eponine scaffold_28 . biological_region 486321 486321 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 480286 482277 . + . ID=Physo133892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280113;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 480286 482277 . + . ID=Physo133892;Parent=Physo133892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 480286 480516 . + 0 ID=Physo133892;Parent=Physo133892;rank=1 scaffold_28 . exon 480286 480516 . + . ID=Physo133892.1;Parent=Physo133892;constitutive=1;rank=1 scaffold_28 . CDS 480624 481400 . + 0 ID=Physo133892;Parent=Physo133892;rank=2 scaffold_28 . exon 480624 481400 . + . ID=Physo133892.2;Parent=Physo133892;constitutive=1;rank=2 scaffold_28 . CDS 481878 481964 . + 0 ID=Physo133892;Parent=Physo133892;rank=3 scaffold_28 . exon 481878 481964 . + . ID=Physo133892.3;Parent=Physo133892;constitutive=1;rank=3 scaffold_28 . CDS 482002 482277 . + 0 ID=Physo133892;Parent=Physo133892;rank=4 scaffold_28 . exon 482002 482277 . + . ID=Physo133892.4;Parent=Physo133892;constitutive=1;rank=4 scaffold_28 ensembl protein_coding_gene 482701 484315 . + . ID=Physo133893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280114;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 482701 484315 . + . ID=Physo133893;Parent=Physo133893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 482701 483008 . + 0 ID=Physo133893;Parent=Physo133893;rank=1 scaffold_28 . exon 482701 483008 . + . ID=Physo133893.1;Parent=Physo133893;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 483094 483357 . + 0 ID=Physo133893;Parent=Physo133893;rank=2 scaffold_28 . exon 483094 483357 . + . ID=Physo133893.2;Parent=Physo133893;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_28 . CDS 483608 484135 . + 0 ID=Physo133893;Parent=Physo133893;rank=3 scaffold_28 . exon 483608 484135 . + . ID=Physo133893.3;Parent=Physo133893;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_28 . CDS 484183 484315 . + 0 ID=Physo133893;Parent=Physo133893;rank=4 scaffold_28 . exon 484183 484315 . + . ID=Physo133893.4;Parent=Physo133893;constitutive=1;ensembl_phase=2;rank=4 scaffold_28 ensembl protein_coding_gene 485466 486062 . - . ID=Physo133894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280115;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 485466 486062 . - . ID=Physo133894;Parent=Physo133894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 485466 486062 . - 0 ID=Physo133894;Parent=Physo133894;rank=1 scaffold_28 . exon 485466 486062 . - . ID=Physo133894.1;Parent=Physo133894;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 486992 489319 . - . ID=Physo133895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280116;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 486992 489319 . - . ID=Physo133895;Parent=Physo133895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 486992 487636 . - 0 ID=Physo133895;Parent=Physo133895;rank=5 scaffold_28 . exon 486992 487636 . - . ID=Physo133895.5;Parent=Physo133895;constitutive=1;rank=5 scaffold_28 . CDS 487713 487767 . - 0 ID=Physo133895;Parent=Physo133895;rank=4 scaffold_28 . exon 487713 487767 . - . ID=Physo133895.4;Parent=Physo133895;constitutive=1;ensembl_phase=2;rank=4 scaffold_28 . CDS 488434 488975 . - 0 ID=Physo133895;Parent=Physo133895;rank=3 scaffold_28 . exon 488434 488975 . - . ID=Physo133895.3;Parent=Physo133895;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_28 . CDS 489036 489117 . - 0 ID=Physo133895;Parent=Physo133895;rank=2 scaffold_28 . exon 489036 489117 . - . ID=Physo133895.2;Parent=Physo133895;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 489189 489319 . - 0 ID=Physo133895;Parent=Physo133895;rank=1 scaffold_28 . exon 489189 489319 . - . ID=Physo133895.1;Parent=Physo133895;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . repeat_region 490049 490059 . ? . description=dust scaffold_28 . repeat_region 490111 490131 . ? . description=dust scaffold_28 . repeat_region 490657 490667 . ? . description=dust scaffold_28 . biological_region 499679 499681 0.999 - . logic_name=eponine scaffold_28 . repeat_region 500256 500324 . ? . description=trf scaffold_28 . repeat_region 500256 500337 . ? . description=trf scaffold_28 . biological_region 507083 507087 0.999 - . logic_name=eponine scaffold_28 . biological_region 507106 507110 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 508357 508964 . + . ID=Physo133896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280117;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 508357 508964 . + . ID=Physo133896;Parent=Physo133896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 508357 508452 . + 0 ID=Physo133896;Parent=Physo133896;rank=1 scaffold_28 . exon 508357 508452 . + . ID=Physo133896.1;Parent=Physo133896;constitutive=1;rank=1 scaffold_28 . CDS 508497 508964 . + 0 ID=Physo133896;Parent=Physo133896;rank=2 scaffold_28 . exon 508497 508964 . + . ID=Physo133896.2;Parent=Physo133896;constitutive=1;rank=2 scaffold_28 ensembl protein_coding_gene 512889 515683 . + . ID=Physo133897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280118;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 512889 515683 . + . ID=Physo133897;Parent=Physo133897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 512889 513696 . + 0 ID=Physo133897;Parent=Physo133897;rank=1 scaffold_28 . exon 512889 513696 . + . ID=Physo133897.1;Parent=Physo133897;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 513801 514506 . + 0 ID=Physo133897;Parent=Physo133897;rank=2 scaffold_28 . exon 513801 514506 . + . ID=Physo133897.2;Parent=Physo133897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_28 . CDS 514597 515434 . + 0 ID=Physo133897;Parent=Physo133897;rank=3 scaffold_28 . exon 514597 515434 . + . ID=Physo133897.3;Parent=Physo133897;constitutive=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 515582 515683 . + 0 ID=Physo133897;Parent=Physo133897;rank=4 scaffold_28 . exon 515582 515683 . + . ID=Physo133897.4;Parent=Physo133897;constitutive=1;rank=4 scaffold_28 ensembl protein_coding_gene 516508 517482 . - . ID=Physo133898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280119;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 516508 517482 . - . ID=Physo133898;Parent=Physo133898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 516508 516603 . - 0 ID=Physo133898;Parent=Physo133898;rank=5 scaffold_28 . exon 516508 516603 . - . ID=Physo133898.5;Parent=Physo133898;constitutive=1;rank=5 scaffold_28 . CDS 516646 516743 . - 0 ID=Physo133898;Parent=Physo133898;rank=4 scaffold_28 . exon 516646 516743 . - . ID=Physo133898.4;Parent=Physo133898;constitutive=1;ensembl_phase=1;rank=4 scaffold_28 . CDS 516783 517032 . - 0 ID=Physo133898;Parent=Physo133898;rank=3 scaffold_28 . exon 516783 517032 . - . ID=Physo133898.3;Parent=Physo133898;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_28 . CDS 517230 517311 . - 0 ID=Physo133898;Parent=Physo133898;rank=2 scaffold_28 . exon 517230 517311 . - . ID=Physo133898.2;Parent=Physo133898;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 517382 517482 . - 0 ID=Physo133898;Parent=Physo133898;rank=1 scaffold_28 . exon 517382 517482 . - . ID=Physo133898.1;Parent=Physo133898;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 519384 520896 . + . ID=Physo133899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280120;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 519384 520896 . + . ID=Physo133899;Parent=Physo133899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 519384 519971 . + 0 ID=Physo133899;Parent=Physo133899;rank=1 scaffold_28 . exon 519384 519971 . + . ID=Physo133899.1;Parent=Physo133899;constitutive=1;rank=1 scaffold_28 . CDS 520069 520896 . + 0 ID=Physo133899;Parent=Physo133899;rank=2 scaffold_28 . repeat_region 523801 523831 . ? . description=dust scaffold_28 . exon 520069 520896 . + . ID=Physo133899.2;Parent=Physo133899;constitutive=1;rank=2 scaffold_28 ensembl protein_coding_gene 521102 522633 . - . ID=Physo133900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280121;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 521102 522633 . - . ID=Physo133900;Parent=Physo133900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 521102 521542 . - 0 ID=Physo133900;Parent=Physo133900;rank=2 scaffold_28 . exon 521102 521542 . - . ID=Physo133900.2;Parent=Physo133900;constitutive=1;rank=2 scaffold_28 . CDS 521605 522633 . - 0 ID=Physo133900;Parent=Physo133900;rank=1 scaffold_28 . exon 521605 522633 . - . ID=Physo133900.1;Parent=Physo133900;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 524613 525950 . - . ID=Physo133901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280122;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 524613 525950 . - . ID=Physo133901;Parent=Physo133901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 524613 525950 . - 0 ID=Physo133901;Parent=Physo133901;rank=1 scaffold_28 . exon 524613 525950 . - . ID=Physo133901.1;Parent=Physo133901;constitutive=1;rank=1 scaffold_28 . repeat_region 536047 536093 . ? . description=trf scaffold_28 . repeat_region 536047 536099 . ? . description=trf scaffold_28 . repeat_region 536099 536209 . ? . description=trf scaffold_28 . repeat_region 536108 536226 . ? . description=trf scaffold_28 . biological_region 536412 536414 0.999 + . logic_name=eponine scaffold_28 . repeat_region 537426 537452 . ? . description=trf scaffold_28 . biological_region 538179 538181 0.999 + . logic_name=eponine scaffold_28 . biological_region 538265 538270 0.999 + . logic_name=eponine scaffold_28 . biological_region 539380 539383 0.999 - . logic_name=eponine scaffold_28 . biological_region 539436 539438 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 530132 530355 . - . ID=Physo115701;biotype=protein_coding;external_name=estExt_Genewise1.C_280023;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 530132 530355 . - . ID=Physo115701;Parent=Physo115701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 530132 530188 . - 0 ID=Physo115701;Parent=Physo115701;rank=1 scaffold_28 . exon 530132 530355 . - . ID=Physo115701.1;Parent=Physo115701;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 . repeat_region 539759 539766 . ? . description=dust scaffold_28 ensembl protein_coding_gene 545262 546371 . + . ID=Physo108737;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_280007;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 545262 546371 . + . ID=Physo108737;Parent=Physo108737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 545262 546371 . + . ID=Physo108737.1;Parent=Physo108737;constitutive=1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 545310 546371 . + 0 ID=Physo108737;Parent=Physo108737;rank=1 scaffold_28 ensembl protein_coding_gene 539926 540941 . - . ID=Physo133902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280123;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 539926 540941 . - . ID=Physo133902;Parent=Physo133902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 539926 539930 . - 0 ID=Physo133902;Parent=Physo133902;rank=3 scaffold_28 . exon 539926 539930 . - . ID=Physo133902.3;Parent=Physo133902;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 . CDS 539986 540451 . - 0 ID=Physo133902;Parent=Physo133902;rank=2 scaffold_28 . exon 539986 540451 . - . ID=Physo133902.2;Parent=Physo133902;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 540477 540941 . - 0 ID=Physo133902;Parent=Physo133902;rank=1 scaffold_28 . exon 540477 540941 . - . ID=Physo133902.1;Parent=Physo133902;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 541699 542880 . + . ID=Physo133903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280124;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 541699 542880 . + . ID=Physo133903;Parent=Physo133903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 541699 542357 . + 0 ID=Physo133903;Parent=Physo133903;rank=1 scaffold_28 . exon 541699 542357 . + . ID=Physo133903.1;Parent=Physo133903;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 542397 542880 . + 0 ID=Physo133903;Parent=Physo133903;rank=2 scaffold_28 . exon 542397 542880 . + . ID=Physo133903.2;Parent=Physo133903;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 ensembl protein_coding_gene 547189 549054 . - . ID=Physo133905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280126;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 547189 549054 . - . ID=Physo133905;Parent=Physo133905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 547189 549054 . - 0 ID=Physo133905;Parent=Physo133905;rank=1 scaffold_28 . exon 547189 549054 . - . ID=Physo133905.1;Parent=Physo133905;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 549453 551424 . - . ID=Physo133906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280127;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 549453 551424 . - . ID=Physo133906;Parent=Physo133906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 549453 551424 . - . ID=Physo133906.1;Parent=Physo133906;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_28 . CDS 549520 551424 . - 0 ID=Physo133906;Parent=Physo133906;rank=1 scaffold_28 . biological_region 550340 550342 0.999 - . logic_name=eponine scaffold_28 . repeat_region 556867 556918 . ? . description=trf scaffold_28 ensembl protein_coding_gene 557111 559376 . + . ID=Physo133907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280128;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 557111 559376 . + . ID=Physo133907;Parent=Physo133907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 557111 557227 . + 0 ID=Physo133907;Parent=Physo133907;rank=1 scaffold_28 . exon 557111 557227 . + . ID=Physo133907.1;Parent=Physo133907;constitutive=1;rank=1 scaffold_28 . CDS 557287 557651 . + 0 ID=Physo133907;Parent=Physo133907;rank=2 scaffold_28 . exon 557287 557651 . + . ID=Physo133907.2;Parent=Physo133907;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_28 . CDS 557777 557979 . + 0 ID=Physo133907;Parent=Physo133907;rank=3 scaffold_28 . exon 557777 557979 . + . ID=Physo133907.3;Parent=Physo133907;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_28 . CDS 558037 558217 . + 0 ID=Physo133907;Parent=Physo133907;rank=4 scaffold_28 . exon 558037 558217 . + . ID=Physo133907.4;Parent=Physo133907;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_28 . CDS 558422 558525 . + 0 ID=Physo133907;Parent=Physo133907;rank=5 scaffold_28 . exon 558422 558525 . + . ID=Physo133907.5;Parent=Physo133907;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_28 . CDS 558895 559376 . + 0 ID=Physo133907;Parent=Physo133907;rank=6 scaffold_28 . exon 558895 559376 . + . ID=Physo133907.6;Parent=Physo133907;constitutive=1;ensembl_phase=1;rank=6 scaffold_28 ensembl protein_coding_gene 559518 561536 . - . ID=Physo133908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280129;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 559518 561536 . - . ID=Physo133908;Parent=Physo133908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 559518 561536 . - 0 ID=Physo133908;Parent=Physo133908;rank=1 scaffold_28 . exon 559518 561536 . - . ID=Physo133908.1;Parent=Physo133908;constitutive=1;rank=1 scaffold_28 . repeat_region 564379 564435 . ? . description=dust scaffold_28 . repeat_region 568970 568977 . ? . description=dust scaffold_28 ensembl protein_coding_gene 562287 564107 . + . ID=Physo133909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280130;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 562287 564107 . + . ID=Physo133909;Parent=Physo133909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 562287 562410 . + 0 ID=Physo133909;Parent=Physo133909;rank=1 scaffold_28 . exon 562287 562410 . + . ID=Physo133909.1;Parent=Physo133909;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 562542 562942 . + 0 ID=Physo133909;Parent=Physo133909;rank=2 scaffold_28 . exon 562542 562942 . + . ID=Physo133909.2;Parent=Physo133909;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 562965 564107 . + 0 ID=Physo133909;Parent=Physo133909;rank=3 scaffold_28 . exon 562965 564107 . + . ID=Physo133909.3;Parent=Physo133909;constitutive=1;rank=3 scaffold_28 ensembl protein_coding_gene 569451 571551 . - . ID=Physo133910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280131;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 569451 571551 . - . ID=Physo133910;Parent=Physo133910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 569451 569457 . - 0 ID=Physo133910;Parent=Physo133910;rank=4 scaffold_28 . exon 569451 569457 . - . ID=Physo133910.4;Parent=Physo133910;constitutive=1;ensembl_phase=2;rank=4 scaffold_28 . CDS 569581 569984 . - 0 ID=Physo133910;Parent=Physo133910;rank=3 scaffold_28 . CDS 570007 570663 . - 0 ID=Physo133910;Parent=Physo133910;rank=2 scaffold_28 . CDS 570757 571551 . - 0 ID=Physo133910;Parent=Physo133910;rank=1 scaffold_28 . biological_region 573928 573929 0.999 - . logic_name=eponine scaffold_28 . biological_region 574130 574132 0.999 + . logic_name=eponine scaffold_28 . biological_region 574673 574675 0.999 - . logic_name=eponine scaffold_28 . exon 569581 569984 . - . ID=Physo133910.3;Parent=Physo133910;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_28 . exon 570007 570663 . - . ID=Physo133910.2;Parent=Physo133910;constitutive=1;rank=2 scaffold_28 . exon 570757 571551 . - . ID=Physo133910.1;Parent=Physo133910;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 572787 575534 . - . ID=Physo133911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280132;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 572787 575534 . - . ID=Physo133911;Parent=Physo133911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 572787 575534 . - 0 ID=Physo133911;Parent=Physo133911;rank=1 scaffold_28 . exon 572787 575534 . - . ID=Physo133911.1;Parent=Physo133911;constitutive=1;rank=1 scaffold_28 . repeat_region 580271 580289 . ? . description=dust scaffold_28 . repeat_region 581626 581705 . ? . description=trf scaffold_28 . repeat_region 588770 588812 . ? . description=dust scaffold_28 ensembl protein_coding_gene 581811 582377 . + . ID=Physo133912;biotype=protein_coding;description=PsAvh241 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Y2];external_name=estExt_fgenesh1_pg.C_280133;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 581811 582377 . + . ID=Physo133912;Parent=Physo133912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 581811 582377 . + 0 ID=Physo133912;Parent=Physo133912;rank=1 scaffold_28 . exon 581811 582377 . + . ID=Physo133912.1;Parent=Physo133912;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 588830 589428 . + . ID=Physo133913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280134;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 588830 589428 . + . ID=Physo133913;Parent=Physo133913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 588830 589404 . + 0 ID=Physo133913;Parent=Physo133913;rank=1 scaffold_28 . exon 588830 589404 . + . ID=Physo133913.1;Parent=Physo133913;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 589425 589428 . + 0 ID=Physo133913;Parent=Physo133913;rank=2 scaffold_28 . exon 589425 589428 . + . ID=Physo133913.2;Parent=Physo133913;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . biological_region 590598 590600 0.999 + . logic_name=eponine scaffold_28 . repeat_region 591097 591139 . + . description=(CAG)n scaffold_28 . biological_region 591529 591532 0.999 + . logic_name=eponine scaffold_28 . biological_region 594143 594144 0.999 - . logic_name=eponine scaffold_28 . biological_region 594182 594187 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 593997 595693 . + . ID=Physo133914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280135;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 593997 595693 . + . ID=Physo133914;Parent=Physo133914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 593997 594919 . + 0 ID=Physo133914;Parent=Physo133914;rank=1 scaffold_28 . exon 593997 594919 . + . ID=Physo133914.1;Parent=Physo133914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 595252 595291 . + 0 ID=Physo133914;Parent=Physo133914;rank=2 scaffold_28 . exon 595252 595693 . + . ID=Physo133914.2;Parent=Physo133914;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_28 ensembl protein_coding_gene 597829 598907 . + . ID=Physo133915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280136;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 597829 598907 . + . ID=Physo133915;Parent=Physo133915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 597829 597897 . + 0 ID=Physo133915;Parent=Physo133915;rank=1 scaffold_28 . exon 597829 597897 . + . ID=Physo133915.1;Parent=Physo133915;constitutive=1;rank=1 scaffold_28 . CDS 597922 598822 . + 0 ID=Physo133915;Parent=Physo133915;rank=2 scaffold_28 . exon 597922 598822 . + . ID=Physo133915.2;Parent=Physo133915;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_28 . CDS 598894 598907 . + 0 ID=Physo133915;Parent=Physo133915;rank=3 scaffold_28 . exon 598894 598907 . + . ID=Physo133915.3;Parent=Physo133915;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 . repeat_region 600066 600073 . ? . description=dust scaffold_28 . repeat_region 600737 600751 . ? . description=dust scaffold_28 . repeat_region 609167 609203 . ? . description=trf scaffold_28 . repeat_region 609347 609486 . ? . description=trf scaffold_28 . repeat_region 609356 609531 . ? . description=trf scaffold_28 . repeat_region 609434 609540 . ? . description=trf scaffold_28 ensembl protein_coding_gene 603722 604543 . - . ID=Physo133916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280137;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 603722 604543 . - . ID=Physo133916;Parent=Physo133916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 603722 604136 . - 0 ID=Physo133916;Parent=Physo133916;rank=2 scaffold_28 . exon 603722 604136 . - . ID=Physo133916.2;Parent=Physo133916;constitutive=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 604317 604543 . - 0 ID=Physo133916;Parent=Physo133916;rank=1 scaffold_28 . exon 604317 604543 . - . ID=Physo133916.1;Parent=Physo133916;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 ensembl protein_coding_gene 608946 609461 . - . ID=Physo133917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280138;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 608946 609461 . - . ID=Physo133917;Parent=Physo133917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 608946 609223 . - . ID=Physo133917.2;Parent=Physo133917;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_28 . CDS 609077 609223 . - 0 ID=Physo133917;Parent=Physo133917;rank=2 scaffold_28 . CDS 609291 609461 . - 0 ID=Physo133917;Parent=Physo133917;rank=1 scaffold_28 . exon 609291 609461 . - . ID=Physo133917.1;Parent=Physo133917;constitutive=1;rank=1 scaffold_28 . biological_region 615523 615525 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 613298 614755 . + . ID=Physo133918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280139;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 613298 614755 . + . ID=Physo133918;Parent=Physo133918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 613298 614755 . + 0 ID=Physo133918;Parent=Physo133918;rank=1 scaffold_28 . exon 613298 614755 . + . ID=Physo133918.1;Parent=Physo133918;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 625245 634838 . - . ID=Physo133919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280140;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 625245 634838 . - . ID=Physo133919;Parent=Physo133919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 625245 634838 . - 0 ID=Physo133919;Parent=Physo133919;rank=1 scaffold_28 . exon 625245 634838 . - . ID=Physo133919.1;Parent=Physo133919;constitutive=1;rank=1 scaffold_28 . biological_region 633070 633072 0.999 - . logic_name=eponine scaffold_28 . biological_region 633846 633848 0.999 + . logic_name=eponine scaffold_28 . biological_region 634099 634100 0.999 + . logic_name=eponine scaffold_28 . biological_region 634214 634221 0.999 - . logic_name=eponine scaffold_28 . biological_region 634617 634618 0.999 + . logic_name=eponine scaffold_28 . repeat_region 635286 635293 . ? . description=dust scaffold_28 . biological_region 636866 636866 0.999 + . logic_name=eponine scaffold_28 . repeat_region 637517 637524 . ? . description=dust scaffold_28 . repeat_region 643145 643186 . ? . description=trf scaffold_28 . repeat_region 643293 643341 . ? . description=trf scaffold_28 . repeat_region 644510 644591 . ? . description=trf scaffold_28 . repeat_region 651421 651429 . ? . description=dust scaffold_28 . biological_region 658018 658019 0.999 - . logic_name=eponine scaffold_28 ensembl protein_coding_gene 650608 650946 . - . ID=Physo133920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280141;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 650608 650946 . - . ID=Physo133920;Parent=Physo133920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 650608 650946 . - 0 ID=Physo133920;Parent=Physo133920;rank=1 scaffold_28 . exon 650608 650946 . - . ID=Physo133920.1;Parent=Physo133920;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 652781 653464 . - . ID=Physo133921;biotype=protein_coding;description=PsAvh195 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Y3];external_name=estExt_fgenesh1_pg.C_280142;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 652781 653464 . - . ID=Physo133921;Parent=Physo133921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 652781 652990 . - 0 ID=Physo133921;Parent=Physo133921;rank=2 scaffold_28 . exon 652781 652990 . - . ID=Physo133921.2;Parent=Physo133921;constitutive=1;rank=2 scaffold_28 . CDS 653096 653464 . - 0 ID=Physo133921;Parent=Physo133921;rank=1 scaffold_28 . exon 653096 653464 . - . ID=Physo133921.1;Parent=Physo133921;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 654863 656141 . + . ID=Physo133922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280143;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 654863 656141 . + . ID=Physo133922;Parent=Physo133922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 654863 655011 . + 0 ID=Physo133922;Parent=Physo133922;rank=1 scaffold_28 . exon 654863 655011 . + . ID=Physo133922.1;Parent=Physo133922;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_28 . CDS 655077 655081 . + 0 ID=Physo133922;Parent=Physo133922;rank=2 scaffold_28 . exon 655077 655081 . + . ID=Physo133922.2;Parent=Physo133922;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_28 . CDS 655216 656141 . + 0 ID=Physo133922;Parent=Physo133922;rank=3 scaffold_28 . exon 655216 656141 . + . ID=Physo133922.3;Parent=Physo133922;constitutive=1;ensembl_phase=1;rank=3 scaffold_28 ensembl protein_coding_gene 657943 658542 . + . ID=Physo133923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280144;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 657943 658542 . + . ID=Physo133923;Parent=Physo133923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 657943 658542 . + 0 ID=Physo133923;Parent=Physo133923;rank=1 scaffold_28 . exon 657943 658542 . + . ID=Physo133923.1;Parent=Physo133923;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 658662 659696 . - . ID=Physo133924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280145;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 658662 659696 . - . ID=Physo133924;Parent=Physo133924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 658662 659696 . - 0 ID=Physo133924;Parent=Physo133924;rank=1 scaffold_28 . exon 658662 659696 . - . ID=Physo133924.1;Parent=Physo133924;constitutive=1;rank=1 scaffold_28 . repeat_region 661314 661370 . ? . description=trf scaffold_28 . repeat_region 661601 661646 . ? . description=trf scaffold_28 . repeat_region 667439 667591 . ? . description=trf scaffold_28 . repeat_region 673951 673958 . ? . description=dust scaffold_28 . biological_region 673977 673987 0.999 + . logic_name=eponine scaffold_28 . biological_region 674054 674058 0.999 - . logic_name=eponine scaffold_28 . biological_region 674143 674145 0.999 + . logic_name=eponine scaffold_28 . biological_region 675628 675628 0.999 + . logic_name=eponine scaffold_28 . biological_region 678286 678289 0.999 + . logic_name=eponine scaffold_28 ensembl protein_coding_gene 669537 669971 . + . ID=Physo133925;biotype=protein_coding;description=PsAvh184 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Y4];external_name=estExt_fgenesh1_pg.C_280146;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 669537 669971 . + . ID=Physo133925;Parent=Physo133925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 669537 669971 . + 0 ID=Physo133925;Parent=Physo133925;rank=1 scaffold_28 . exon 669537 669971 . + . ID=Physo133925.1;Parent=Physo133925;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 677790 678383 . - . ID=Physo133926;biotype=protein_coding;description=PsAvh228 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Y5];external_name=estExt_fgenesh1_pg.C_280147;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 677790 678383 . - . ID=Physo133926;Parent=Physo133926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 677790 678383 . - 0 ID=Physo133926;Parent=Physo133926;rank=1 scaffold_28 . exon 677790 678383 . - . ID=Physo133926.1;Parent=Physo133926;constitutive=1;rank=1 scaffold_28 . repeat_region 680780 680885 . ? . description=trf scaffold_28 . repeat_region 680983 681053 . ? . description=trf scaffold_28 . repeat_region 681002 681090 . ? . description=trf scaffold_28 ensembl protein_coding_gene 685353 685646 . + . ID=Physo115720;biotype=protein_coding;external_name=estExt_Genewise1.C_280042;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 685353 685646 . + . ID=Physo115720;Parent=Physo115720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 685353 685646 . + . ID=Physo115720.1;Parent=Physo115720;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 685354 685644 . + 0 ID=Physo115720;Parent=Physo115720;rank=1 scaffold_28 ensembl protein_coding_gene 684468 685055 . + . ID=Physo133927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280148;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 684468 685055 . + . ID=Physo133927;Parent=Physo133927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 684468 685055 . + 0 ID=Physo133927;Parent=Physo133927;rank=1 scaffold_28 . exon 684468 685055 . + . ID=Physo133927.1;Parent=Physo133927;constitutive=1;rank=1 scaffold_28 ensembl protein_coding_gene 688583 691225 . - . ID=Physo133929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280150;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 688583 691225 . - . ID=Physo133929;Parent=Physo133929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 688583 691011 . - 0 ID=Physo133929;Parent=Physo133929;rank=2 scaffold_28 . exon 688583 691011 . - . ID=Physo133929.2;Parent=Physo133929;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 691219 691225 . - 0 ID=Physo133929;Parent=Physo133929;rank=1 scaffold_28 ensembl protein_coding_gene 685904 688385 . + . ID=Physo156825;biotype=protein_coding;external_name=C_scaffold_28000009;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 685904 688385 . + . ID=Physo156825;Parent=Physo156825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 685904 686879 . + 0 ID=Physo156825;Parent=Physo156825;rank=1 scaffold_28 . exon 685904 686879 . + . ID=Physo156825.1;Parent=Physo156825;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 . CDS 687196 687281 . + 0 ID=Physo156825;Parent=Physo156825;rank=2 scaffold_28 . exon 687196 687281 . + . ID=Physo156825.2;Parent=Physo156825;constitutive=1;ensembl_phase=1;rank=2 scaffold_28 . CDS 687339 687917 . + 0 ID=Physo156825;Parent=Physo156825;rank=3 scaffold_28 . exon 687339 687917 . + . ID=Physo156825.3;Parent=Physo156825;constitutive=1;rank=3 scaffold_28 . CDS 687954 688385 . + 0 ID=Physo156825;Parent=Physo156825;rank=4 scaffold_28 . exon 687954 688385 . + . ID=Physo156825.4;Parent=Physo156825;constitutive=1;rank=4 scaffold_28 . repeat_region 690265 690289 . ? . description=dust scaffold_28 . biological_region 690848 690850 0.999 + . logic_name=eponine scaffold_28 . repeat_region 695289 695296 . ? . description=dust scaffold_28 . biological_region 696354 696354 0.999 + . logic_name=eponine scaffold_28 . exon 691219 691225 . - . ID=Physo133929.1;Parent=Physo133929;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_28 ensembl protein_coding_gene 694377 694826 . - . ID=Physo133930;biotype=protein_coding;description=PsAvh122 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Y6];external_name=estExt_fgenesh1_pg.C_280151;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 694377 694826 . - . ID=Physo133930;Parent=Physo133930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 694377 694826 . - 0 ID=Physo133930;Parent=Physo133930;rank=1 scaffold_28 . exon 694377 694826 . - . ID=Physo133930.1;Parent=Physo133930;constitutive=1;rank=1 scaffold_28 . repeat_region 706638 706671 . ? . description=trf scaffold_28 . repeat_region 707957 708022 . ? . description=trf scaffold_28 . repeat_region 708012 708098 . ? . description=trf scaffold_28 ensembl protein_coding_gene 701150 701647 . - . ID=Physo133931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280152;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 701150 701647 . - . ID=Physo133931;Parent=Physo133931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 701150 701647 . - 0 ID=Physo133931;Parent=Physo133931;rank=1 scaffold_28 . exon 701150 701647 . - . ID=Physo133931.1;Parent=Physo133931;constitutive=1;rank=1 scaffold_28 . repeat_region 709555 709568 . ? . description=dust scaffold_28 . biological_region 711112 711117 0.999 + . logic_name=eponine scaffold_28 . biological_region 711294 711295 0.999 - . logic_name=eponine scaffold_28 . biological_region 712431 712432 0.999 - . logic_name=eponine scaffold_28 . repeat_region 714292 714301 . ? . description=dust scaffold_28 . repeat_region 714960 714967 . ? . description=dust scaffold_28 . repeat_region 715568 715589 . ? . description=dust scaffold_28 . repeat_region 715844 715859 . ? . description=dust scaffold_28 . repeat_region 717188 717200 . ? . description=dust scaffold_28 ensembl protein_coding_gene 711102 711245 . + . ID=Physo115721;biotype=protein_coding;external_name=estExt_Genewise1.C_280043;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 711102 711245 . + . ID=Physo115721;Parent=Physo115721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 711102 711245 . + . ID=Physo115721.1;Parent=Physo115721;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_28 . CDS 711104 711244 . + 0 ID=Physo115721;Parent=Physo115721;rank=1 scaffold_28 ensembl protein_coding_gene 711611 712558 . - . ID=Physo133932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280153;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 711611 712558 . - . ID=Physo133932;Parent=Physo133932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . CDS 711611 712558 . - 0 ID=Physo133932;Parent=Physo133932;rank=1 scaffold_28 . exon 711611 712558 . - . ID=Physo133932.1;Parent=Physo133932;constitutive=1;rank=1 scaffold_28 . repeat_region 722091 740366 . ? . description=dust scaffold_28 ensembl protein_coding_gene 747829 749199 . - . ID=Physo133933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_280154;logic_name=jgi_physo1_1 scaffold_28 ensembl transcript 747829 749199 . - . ID=Physo133933;Parent=Physo133933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_28 . exon 747829 749199 . - . ID=Physo133933.1;Parent=Physo133933;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_28 . CDS 747997 749199 . - 0 ID=Physo133933;Parent=Physo133933;rank=1 ##gff-version 3 ##sequence-region scaffold_27 1 768167 scaffold_27 . repeat_region 588 608 . ? . description=trf scaffold_27 . biological_region 2939 2940 0.999 + . logic_name=eponine scaffold_27 . biological_region 6239 6239 0.999 + . logic_name=eponine scaffold_27 . repeat_region 9581 9604 . ? . description=dust scaffold_27 . biological_region 9852 9859 0.999 + . logic_name=eponine scaffold_27 . biological_region 9885 9886 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 2013 3587 . + . ID=Physo133589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270001;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 2013 3587 . + . ID=Physo133589;Parent=Physo133589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 2013 2037 . + 0 ID=Physo133589;Parent=Physo133589;rank=1 scaffold_27 . exon 2013 2037 . + . ID=Physo133589.1;Parent=Physo133589;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 2064 2608 . + 0 ID=Physo133589;Parent=Physo133589;rank=2 scaffold_27 . exon 2064 2608 . + . ID=Physo133589.2;Parent=Physo133589;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 2861 3022 . + 0 ID=Physo133589;Parent=Physo133589;rank=3 scaffold_27 . exon 2861 3022 . + . ID=Physo133589.3;Parent=Physo133589;constitutive=1;rank=3 scaffold_27 . CDS 3124 3165 . + 0 ID=Physo133589;Parent=Physo133589;rank=4 scaffold_27 . exon 3124 3587 . + . ID=Physo133589.4;Parent=Physo133589;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_27 ensembl protein_coding_gene 7391 10154 . - . ID=Physo156767;biotype=protein_coding;external_name=C_scaffold_27000001;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 7391 10154 . - . ID=Physo156767;Parent=Physo156767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 7391 7493 . - 0 ID=Physo156767;Parent=Physo156767;rank=11 scaffold_27 . exon 7391 7493 . - . ID=Physo156767.11;Parent=Physo156767;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_27 . CDS 7620 7704 . - 0 ID=Physo156767;Parent=Physo156767;rank=10 scaffold_27 . exon 7620 7704 . - . ID=Physo156767.10;Parent=Physo156767;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_27 . CDS 7772 7882 . - 0 ID=Physo156767;Parent=Physo156767;rank=9 scaffold_27 . exon 7772 7882 . - . ID=Physo156767.9;Parent=Physo156767;constitutive=1;rank=9 scaffold_27 . CDS 7961 8014 . - 0 ID=Physo156767;Parent=Physo156767;rank=8 scaffold_27 . exon 7961 8014 . - . ID=Physo156767.8;Parent=Physo156767;constitutive=1;rank=8 scaffold_27 . CDS 8039 8121 . - 0 ID=Physo156767;Parent=Physo156767;rank=7 scaffold_27 . exon 8039 8121 . - . ID=Physo156767.7;Parent=Physo156767;constitutive=1;ensembl_phase=1;rank=7 scaffold_27 . CDS 8323 8388 . - 0 ID=Physo156767;Parent=Physo156767;rank=6 scaffold_27 . exon 8323 8388 . - . ID=Physo156767.6;Parent=Physo156767;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_27 . CDS 8476 8605 . - 0 ID=Physo156767;Parent=Physo156767;rank=5 scaffold_27 . exon 8476 8605 . - . ID=Physo156767.5;Parent=Physo156767;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_27 . CDS 8924 9200 . - 0 ID=Physo156767;Parent=Physo156767;rank=4 scaffold_27 . exon 8924 9200 . - . ID=Physo156767.4;Parent=Physo156767;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 9246 9538 . - 0 ID=Physo156767;Parent=Physo156767;rank=3 scaffold_27 . exon 9246 9538 . - . ID=Physo156767.3;Parent=Physo156767;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 9621 9854 . - 0 ID=Physo156767;Parent=Physo156767;rank=2 scaffold_27 . exon 9621 9854 . - . ID=Physo156767.2;Parent=Physo156767;constitutive=1;rank=2 scaffold_27 . CDS 9897 10154 . - 0 ID=Physo156767;Parent=Physo156767;rank=1 scaffold_27 . exon 9897 10154 . - . ID=Physo156767.1;Parent=Physo156767;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 18525 25194 . + . ID=Physo133592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270004;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 18525 25194 . + . ID=Physo133592;Parent=Physo133592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 18525 19435 . + 0 ID=Physo133592;Parent=Physo133592;rank=1 scaffold_27 . exon 18525 19435 . + . ID=Physo133592.1;Parent=Physo133592;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 19513 19706 . + 0 ID=Physo133592;Parent=Physo133592;rank=2 scaffold_27 . exon 19513 19706 . + . ID=Physo133592.2;Parent=Physo133592;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 20317 20770 . + 0 ID=Physo133592;Parent=Physo133592;rank=3 scaffold_27 . CDS 20863 21012 . + 0 ID=Physo133592;Parent=Physo133592;rank=4 scaffold_27 . CDS 21156 21199 . + 0 ID=Physo133592;Parent=Physo133592;rank=5 scaffold_27 . CDS 21273 21804 . + 0 ID=Physo133592;Parent=Physo133592;rank=6 scaffold_27 . CDS 21888 22056 . + 0 ID=Physo133592;Parent=Physo133592;rank=7 scaffold_27 . CDS 22410 22820 . + 0 ID=Physo133592;Parent=Physo133592;rank=8 scaffold_27 . CDS 23011 23620 . + 0 ID=Physo133592;Parent=Physo133592;rank=9 scaffold_27 . CDS 23778 24742 . + 0 ID=Physo133592;Parent=Physo133592;rank=10 scaffold_27 . CDS 24847 25194 . + 0 ID=Physo133592;Parent=Physo133592;rank=11 scaffold_27 ensembl protein_coding_gene 11519 18374 . - . ID=Physo156769;biotype=protein_coding;external_name=C_scaffold_27000003;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 11519 18374 . - . ID=Physo156769;Parent=Physo156769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 11519 11737 . - 0 ID=Physo156769;Parent=Physo156769;rank=17 scaffold_27 . exon 11519 11737 . - . ID=Physo156769.17;Parent=Physo156769;constitutive=1;rank=17 scaffold_27 . CDS 11939 12147 . - 0 ID=Physo156769;Parent=Physo156769;rank=16 scaffold_27 . exon 11939 12147 . - . ID=Physo156769.16;Parent=Physo156769;constitutive=1;ensembl_phase=1;rank=16 scaffold_27 . CDS 12238 12415 . - 0 ID=Physo156769;Parent=Physo156769;rank=15 scaffold_27 . exon 12238 12415 . - . ID=Physo156769.15;Parent=Physo156769;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_27 . CDS 12491 12700 . - 0 ID=Physo156769;Parent=Physo156769;rank=14 scaffold_27 . exon 12491 12700 . - . ID=Physo156769.14;Parent=Physo156769;constitutive=1;rank=14 scaffold_27 . CDS 12953 13254 . - 0 ID=Physo156769;Parent=Physo156769;rank=13 scaffold_27 . exon 12953 13254 . - . ID=Physo156769.13;Parent=Physo156769;constitutive=1;ensembl_phase=1;rank=13 scaffold_27 . CDS 13309 14724 . - 0 ID=Physo156769;Parent=Physo156769;rank=12 scaffold_27 . exon 13309 14724 . - . ID=Physo156769.12;Parent=Physo156769;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_27 . CDS 14904 15161 . - 0 ID=Physo156769;Parent=Physo156769;rank=11 scaffold_27 . exon 14904 15161 . - . ID=Physo156769.11;Parent=Physo156769;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_27 . CDS 15456 16680 . - 0 ID=Physo156769;Parent=Physo156769;rank=10 scaffold_27 . exon 15456 16680 . - . ID=Physo156769.10;Parent=Physo156769;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_27 . CDS 16889 16955 . - 0 ID=Physo156769;Parent=Physo156769;rank=9 scaffold_27 . exon 16889 16955 . - . ID=Physo156769.9;Parent=Physo156769;constitutive=1;ensembl_phase=2;rank=9 scaffold_27 . CDS 17025 17139 . - 0 ID=Physo156769;Parent=Physo156769;rank=8 scaffold_27 . exon 17025 17139 . - . ID=Physo156769.8;Parent=Physo156769;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_27 . CDS 17224 17347 . - 0 ID=Physo156769;Parent=Physo156769;rank=7 scaffold_27 . exon 17224 17347 . - . ID=Physo156769.7;Parent=Physo156769;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_27 . CDS 17426 17549 . - 0 ID=Physo156769;Parent=Physo156769;rank=6 scaffold_27 . exon 17426 17549 . - . ID=Physo156769.6;Parent=Physo156769;constitutive=1;ensembl_phase=2;rank=6 scaffold_27 . CDS 17620 17710 . - 0 ID=Physo156769;Parent=Physo156769;rank=5 scaffold_27 . exon 17620 17710 . - . ID=Physo156769.5;Parent=Physo156769;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_27 . CDS 17778 17845 . - 0 ID=Physo156769;Parent=Physo156769;rank=4 scaffold_27 . exon 17778 17845 . - . ID=Physo156769.4;Parent=Physo156769;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 17917 18020 . - 0 ID=Physo156769;Parent=Physo156769;rank=3 scaffold_27 . exon 17917 18020 . - . ID=Physo156769.3;Parent=Physo156769;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 18091 18123 . - 0 ID=Physo156769;Parent=Physo156769;rank=2 scaffold_27 . exon 18091 18123 . - . ID=Physo156769.2;Parent=Physo156769;constitutive=1;rank=2 scaffold_27 . CDS 18222 18374 . - 0 ID=Physo156769;Parent=Physo156769;rank=1 scaffold_27 . exon 18222 18374 . - . ID=Physo156769.1;Parent=Physo156769;constitutive=1;rank=1 scaffold_27 . biological_region 20318 20323 0.999 + . logic_name=eponine scaffold_27 . biological_region 23850 23852 0.999 - . logic_name=eponine scaffold_27 . biological_region 23869 23873 0.999 + . logic_name=eponine scaffold_27 . repeat_region 24067 24117 . ? . description=dust scaffold_27 . repeat_region 24241 24297 . ? . description=trf scaffold_27 . biological_region 25925 25928 0.999 + . logic_name=eponine scaffold_27 . repeat_region 27066 27101 . ? . description=trf scaffold_27 . repeat_region 27457 27511 . ? . description=trf scaffold_27 . biological_region 28665 28668 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 25394 26464 . - . ID=Physo108716;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_270001;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 25394 26464 . - . ID=Physo108716;Parent=Physo108716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 25394 26464 . - 0 ID=Physo108716;Parent=Physo108716;rank=1 scaffold_27 . exon 25394 26464 . - . ID=Physo108716.1;Parent=Physo108716;constitutive=1;rank=1 scaffold_27 . exon 20317 20770 . + . ID=Physo133592.3;Parent=Physo133592;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . exon 20863 21012 . + . ID=Physo133592.4;Parent=Physo133592;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_27 . exon 21156 21199 . + . ID=Physo133592.5;Parent=Physo133592;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_27 . exon 21273 21804 . + . ID=Physo133592.6;Parent=Physo133592;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_27 . exon 21888 22056 . + . ID=Physo133592.7;Parent=Physo133592;constitutive=1;ensembl_phase=2;rank=7 scaffold_27 . exon 22410 22820 . + . ID=Physo133592.8;Parent=Physo133592;constitutive=1;rank=8 scaffold_27 . exon 23011 23620 . + . ID=Physo133592.9;Parent=Physo133592;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_27 . exon 23778 24742 . + . ID=Physo133592.10;Parent=Physo133592;constitutive=1;ensembl_phase=1;rank=10 scaffold_27 . exon 24847 25194 . + . ID=Physo133592.11;Parent=Physo133592;constitutive=1;rank=11 scaffold_27 ensembl protein_coding_gene 28128 29198 . + . ID=Physo133594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270006;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 28128 29198 . + . ID=Physo133594;Parent=Physo133594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 28128 29198 . + 0 ID=Physo133594;Parent=Physo133594;rank=1 scaffold_27 . exon 28128 29198 . + . ID=Physo133594.1;Parent=Physo133594;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 29498 30941 . - . ID=Physo133595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270007;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 29498 30941 . - . ID=Physo133595;Parent=Physo133595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 29498 29770 . - 0 ID=Physo133595;Parent=Physo133595;rank=5 scaffold_27 . exon 29498 29770 . - . ID=Physo133595.5;Parent=Physo133595;constitutive=1;rank=5 scaffold_27 . CDS 29826 29930 . - 0 ID=Physo133595;Parent=Physo133595;rank=4 scaffold_27 . exon 29826 29930 . - . ID=Physo133595.4;Parent=Physo133595;constitutive=1;rank=4 scaffold_27 . CDS 29976 30376 . - 0 ID=Physo133595;Parent=Physo133595;rank=3 scaffold_27 . CDS 30592 30648 . - 0 ID=Physo133595;Parent=Physo133595;rank=2 scaffold_27 . CDS 30827 30941 . - 0 ID=Physo133595;Parent=Physo133595;rank=1 scaffold_27 . exon 29976 30376 . - . ID=Physo133595.3;Parent=Physo133595;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . exon 30592 30648 . - . ID=Physo133595.2;Parent=Physo133595;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . exon 30827 30941 . - . ID=Physo133595.1;Parent=Physo133595;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 31465 32510 . - . ID=Physo133596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270008;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 31465 32510 . - . ID=Physo133596;Parent=Physo133596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 31465 31620 . - 0 ID=Physo133596;Parent=Physo133596;rank=2 scaffold_27 . exon 31465 31620 . - . ID=Physo133596.2;Parent=Physo133596;constitutive=1;rank=2 scaffold_27 . CDS 31653 32510 . - 0 ID=Physo133596;Parent=Physo133596;rank=1 scaffold_27 . exon 31653 32510 . - . ID=Physo133596.1;Parent=Physo133596;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 36503 37564 . + . ID=Physo133597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270009;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 36503 37564 . + . ID=Physo133597;Parent=Physo133597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 36503 37564 . + 0 ID=Physo133597;Parent=Physo133597;rank=1 scaffold_27 . exon 36503 37564 . + . ID=Physo133597.1;Parent=Physo133597;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 39327 40541 . + . ID=Physo133598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270010;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 39327 40541 . + . ID=Physo133598;Parent=Physo133598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 39327 39483 . + 0 ID=Physo133598;Parent=Physo133598;rank=1 scaffold_27 . exon 39327 39483 . + . ID=Physo133598.1;Parent=Physo133598;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 39590 39633 . + 0 ID=Physo133598;Parent=Physo133598;rank=2 scaffold_27 . exon 39590 39633 . + . ID=Physo133598.2;Parent=Physo133598;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 39713 39791 . + 0 ID=Physo133598;Parent=Physo133598;rank=3 scaffold_27 . exon 39713 39791 . + . ID=Physo133598.3;Parent=Physo133598;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 39862 40093 . + 0 ID=Physo133598;Parent=Physo133598;rank=4 scaffold_27 . exon 39862 40093 . + . ID=Physo133598.4;Parent=Physo133598;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_27 . CDS 40172 40541 . + 0 ID=Physo133598;Parent=Physo133598;rank=5 scaffold_27 . repeat_region 41861 41896 . ? . description=trf scaffold_27 . biological_region 43694 43698 0.999 - . logic_name=eponine scaffold_27 . repeat_region 45598 45672 . ? . description=trf scaffold_27 . repeat_region 45599 45661 . ? . description=dust scaffold_27 . repeat_region 45626 45673 . ? . description=trf scaffold_27 . biological_region 46889 46895 0.999 + . logic_name=eponine scaffold_27 . biological_region 46907 46910 0.999 - . logic_name=eponine scaffold_27 . biological_region 46923 46925 0.999 + . logic_name=eponine scaffold_27 . biological_region 46970 46977 0.999 - . logic_name=eponine scaffold_27 . biological_region 47026 47026 0.999 + . logic_name=eponine scaffold_27 . biological_region 47102 47107 0.999 - . logic_name=eponine scaffold_27 . biological_region 47635 47637 0.999 + . logic_name=eponine scaffold_27 . biological_region 47675 47678 0.999 - . logic_name=eponine scaffold_27 . biological_region 47793 47794 0.999 - . logic_name=eponine scaffold_27 . repeat_region 49849 51734 . ? . description=dust scaffold_27 . exon 40172 40541 . + . ID=Physo133598.5;Parent=Physo133598;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 ensembl protein_coding_gene 42949 43884 . + . ID=Physo133599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270011;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 42949 43884 . + . ID=Physo133599;Parent=Physo133599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 42949 43125 . + 0 ID=Physo133599;Parent=Physo133599;rank=1 scaffold_27 . exon 42949 43125 . + . ID=Physo133599.1;Parent=Physo133599;constitutive=1;rank=1 scaffold_27 . CDS 43147 43284 . + 0 ID=Physo133599;Parent=Physo133599;rank=2 scaffold_27 . exon 43147 43284 . + . ID=Physo133599.2;Parent=Physo133599;constitutive=1;rank=2 scaffold_27 . CDS 43357 43884 . + 0 ID=Physo133599;Parent=Physo133599;rank=3 scaffold_27 . exon 43357 43884 . + . ID=Physo133599.3;Parent=Physo133599;constitutive=1;rank=3 scaffold_27 ensembl protein_coding_gene 45036 46397 . + . ID=Physo133600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270012;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 45036 46397 . + . ID=Physo133600;Parent=Physo133600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 45036 45473 . + . ID=Physo133600.1;Parent=Physo133600;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_27 . CDS 45055 45473 . + 0 ID=Physo133600;Parent=Physo133600;rank=1 scaffold_27 . CDS 45556 46199 . + 0 ID=Physo133600;Parent=Physo133600;rank=2 scaffold_27 . exon 45556 46199 . + . ID=Physo133600.2;Parent=Physo133600;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 46282 46397 . + 0 ID=Physo133600;Parent=Physo133600;rank=3 scaffold_27 . exon 46282 46397 . + . ID=Physo133600.3;Parent=Physo133600;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 ensembl protein_coding_gene 46814 49378 . + . ID=Physo133601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270013;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 46814 49378 . + . ID=Physo133601;Parent=Physo133601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 46814 49378 . + 0 ID=Physo133601;Parent=Physo133601;rank=1 scaffold_27 . exon 46814 49378 . + . ID=Physo133601.1;Parent=Physo133601;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 54342 55278 . + . ID=Physo133602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270014;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 54342 55278 . + . ID=Physo133602;Parent=Physo133602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 54342 54518 . + 0 ID=Physo133602;Parent=Physo133602;rank=1 scaffold_27 . exon 54342 54518 . + . ID=Physo133602.1;Parent=Physo133602;constitutive=1;rank=1 scaffold_27 . CDS 54540 54677 . + 0 ID=Physo133602;Parent=Physo133602;rank=2 scaffold_27 . exon 54540 54677 . + . ID=Physo133602.2;Parent=Physo133602;constitutive=1;rank=2 scaffold_27 . CDS 54750 55221 . + 0 ID=Physo133602;Parent=Physo133602;rank=3 scaffold_27 . exon 54750 55221 . + . ID=Physo133602.3;Parent=Physo133602;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 55271 55278 . + 0 ID=Physo133602;Parent=Physo133602;rank=4 scaffold_27 . exon 55271 55278 . + . ID=Physo133602.4;Parent=Physo133602;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 ensembl protein_coding_gene 55449 56495 . - . ID=Physo133603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270015;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 55449 56495 . - . ID=Physo133603;Parent=Physo133603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 55449 55702 . - 0 ID=Physo133603;Parent=Physo133603;rank=2 scaffold_27 . exon 55449 55702 . - . ID=Physo133603.2;Parent=Physo133603;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 55835 56495 . - 0 ID=Physo133603;Parent=Physo133603;rank=1 scaffold_27 . exon 55835 56495 . - . ID=Physo133603.1;Parent=Physo133603;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 57416 59245 . + . ID=Physo133604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270016;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 57416 59245 . + . ID=Physo133604;Parent=Physo133604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 57416 59245 . + 0 ID=Physo133604;Parent=Physo133604;rank=1 scaffold_27 . exon 57416 59245 . + . ID=Physo133604.1;Parent=Physo133604;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 59475 61000 . - . ID=Physo133605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270017;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 59475 61000 . - . ID=Physo133605;Parent=Physo133605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 59475 60005 . - 0 ID=Physo133605;Parent=Physo133605;rank=3 scaffold_27 . exon 59475 60005 . - . ID=Physo133605.3;Parent=Physo133605;constitutive=1;rank=3 scaffold_27 . CDS 60087 60465 . - 0 ID=Physo133605;Parent=Physo133605;rank=2 scaffold_27 . CDS 60594 61000 . - 0 ID=Physo133605;Parent=Physo133605;rank=1 scaffold_27 . biological_region 60372 60375 0.999 + . logic_name=eponine scaffold_27 . biological_region 60712 60717 0.999 + . logic_name=eponine scaffold_27 . biological_region 60759 60759 0.999 + . logic_name=eponine scaffold_27 . biological_region 60764 60773 0.999 + . logic_name=eponine scaffold_27 . biological_region 60780 60783 0.999 - . logic_name=eponine scaffold_27 . biological_region 60788 60794 0.999 + . logic_name=eponine scaffold_27 . biological_region 60812 60816 0.999 + . logic_name=eponine scaffold_27 . biological_region 60835 60840 0.999 + . logic_name=eponine scaffold_27 . biological_region 60851 60862 0.999 + . logic_name=eponine scaffold_27 . biological_region 60856 60862 0.999 - . logic_name=eponine scaffold_27 . biological_region 60879 60884 0.999 - . logic_name=eponine scaffold_27 . biological_region 60918 60924 0.999 - . logic_name=eponine scaffold_27 . repeat_region 61419 61427 . ? . description=dust scaffold_27 . repeat_region 61637 61646 . ? . description=dust scaffold_27 . biological_region 63795 63797 0.999 - . logic_name=eponine scaffold_27 . biological_region 64496 64500 0.999 + . logic_name=eponine scaffold_27 . biological_region 64535 64536 0.999 + . logic_name=eponine scaffold_27 . biological_region 64557 64564 0.999 + . logic_name=eponine scaffold_27 . repeat_region 65376 65392 . ? . description=dust scaffold_27 . repeat_region 66391 66404 . ? . description=dust scaffold_27 . exon 60087 60465 . - . ID=Physo133605.2;Parent=Physo133605;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . exon 60594 61000 . - . ID=Physo133605.1;Parent=Physo133605;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 ensembl protein_coding_gene 64150 64885 . + . ID=Physo133606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270018;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 64150 64885 . + . ID=Physo133606;Parent=Physo133606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 64150 64250 . + 0 ID=Physo133606;Parent=Physo133606;rank=1 scaffold_27 . exon 64150 64250 . + . ID=Physo133606.1;Parent=Physo133606;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 64290 64785 . + 0 ID=Physo133606;Parent=Physo133606;rank=2 scaffold_27 . exon 64290 64785 . + . ID=Physo133606.2;Parent=Physo133606;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 64814 64885 . + 0 ID=Physo133606;Parent=Physo133606;rank=3 scaffold_27 . exon 64814 64885 . + . ID=Physo133606.3;Parent=Physo133606;constitutive=1;rank=3 scaffold_27 ensembl protein_coding_gene 66665 69931 . - . ID=Physo133607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270019;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 66665 69931 . - . ID=Physo133607;Parent=Physo133607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 66665 66891 . - 0 ID=Physo133607;Parent=Physo133607;rank=11 scaffold_27 . exon 66665 66891 . - . ID=Physo133607.11;Parent=Physo133607;constitutive=1;ensembl_phase=1;rank=11 scaffold_27 . CDS 66972 67046 . - 0 ID=Physo133607;Parent=Physo133607;rank=10 scaffold_27 . exon 66972 67046 . - . ID=Physo133607.10;Parent=Physo133607;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_27 . CDS 67110 67212 . - 0 ID=Physo133607;Parent=Physo133607;rank=9 scaffold_27 . exon 67110 67212 . - . ID=Physo133607.9;Parent=Physo133607;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_27 . CDS 67745 67886 . - 0 ID=Physo133607;Parent=Physo133607;rank=8 scaffold_27 . exon 67745 67886 . - . ID=Physo133607.8;Parent=Physo133607;constitutive=1;ensembl_phase=2;rank=8 scaffold_27 . CDS 67967 68197 . - 0 ID=Physo133607;Parent=Physo133607;rank=7 scaffold_27 . exon 67967 68197 . - . ID=Physo133607.7;Parent=Physo133607;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_27 . CDS 68379 68529 . - 0 ID=Physo133607;Parent=Physo133607;rank=6 scaffold_27 . exon 68379 68529 . - . ID=Physo133607.6;Parent=Physo133607;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_27 . CDS 68605 68742 . - 0 ID=Physo133607;Parent=Physo133607;rank=5 scaffold_27 . exon 68605 68742 . - . ID=Physo133607.5;Parent=Physo133607;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_27 . CDS 68812 68929 . - 0 ID=Physo133607;Parent=Physo133607;rank=4 scaffold_27 . exon 68812 68929 . - . ID=Physo133607.4;Parent=Physo133607;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_27 . CDS 69006 69414 . - 0 ID=Physo133607;Parent=Physo133607;rank=3 scaffold_27 . exon 69006 69414 . - . ID=Physo133607.3;Parent=Physo133607;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 69490 69606 . - 0 ID=Physo133607;Parent=Physo133607;rank=2 scaffold_27 . exon 69490 69606 . - . ID=Physo133607.2;Parent=Physo133607;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_27 . CDS 69681 69931 . - 0 ID=Physo133607;Parent=Physo133607;rank=1 scaffold_27 . exon 69681 69931 . - . ID=Physo133607.1;Parent=Physo133607;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . repeat_region 79746 79820 . ? . description=trf scaffold_27 ensembl protein_coding_gene 70085 71471 . - . ID=Physo156774;biotype=protein_coding;external_name=C_scaffold_27000008;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 70085 71471 . - . ID=Physo156774;Parent=Physo156774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 70085 70369 . - 0 ID=Physo156774;Parent=Physo156774;rank=6 scaffold_27 . exon 70085 70369 . - . ID=Physo156774.6;Parent=Physo156774;constitutive=1;rank=6 scaffold_27 . CDS 70444 70515 . - 0 ID=Physo156774;Parent=Physo156774;rank=5 scaffold_27 . exon 70444 70515 . - . ID=Physo156774.5;Parent=Physo156774;constitutive=1;rank=5 scaffold_27 . CDS 70882 70982 . - 0 ID=Physo156774;Parent=Physo156774;rank=4 scaffold_27 . exon 70882 70982 . - . ID=Physo156774.4;Parent=Physo156774;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . CDS 71163 71296 . - 0 ID=Physo156774;Parent=Physo156774;rank=3 scaffold_27 . exon 71163 71296 . - . ID=Physo156774.3;Parent=Physo156774;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 71367 71444 . - 0 ID=Physo156774;Parent=Physo156774;rank=2 scaffold_27 . exon 71367 71444 . - . ID=Physo156774.2;Parent=Physo156774;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_27 . CDS 71464 71471 . - 0 ID=Physo156774;Parent=Physo156774;rank=1 scaffold_27 . exon 71464 71471 . - . ID=Physo156774.1;Parent=Physo156774;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 ensembl protein_coding_gene 72710 75486 . - . ID=Physo156775;biotype=protein_coding;external_name=C_scaffold_27000009;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 72710 75486 . - . ID=Physo156775;Parent=Physo156775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 72710 72852 . - 0 ID=Physo156775;Parent=Physo156775;rank=7 scaffold_27 . exon 72710 72852 . - . ID=Physo156775.7;Parent=Physo156775;constitutive=1;ensembl_phase=1;rank=7 scaffold_27 . CDS 73178 73223 . - 0 ID=Physo156775;Parent=Physo156775;rank=6 scaffold_27 . exon 73178 73223 . - . ID=Physo156775.6;Parent=Physo156775;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_27 . CDS 73297 73399 . - 0 ID=Physo156775;Parent=Physo156775;rank=5 scaffold_27 . exon 73297 73399 . - . ID=Physo156775.5;Parent=Physo156775;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 73457 73554 . - 0 ID=Physo156775;Parent=Physo156775;rank=4 scaffold_27 . exon 73457 73554 . - . ID=Physo156775.4;Parent=Physo156775;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 74229 74366 . - 0 ID=Physo156775;Parent=Physo156775;rank=3 scaffold_27 . exon 74229 74366 . - . ID=Physo156775.3;Parent=Physo156775;constitutive=1;rank=3 scaffold_27 . CDS 74526 74704 . - 0 ID=Physo156775;Parent=Physo156775;rank=2 scaffold_27 . exon 74526 74704 . - . ID=Physo156775.2;Parent=Physo156775;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 74778 75486 . - 0 ID=Physo156775;Parent=Physo156775;rank=1 scaffold_27 . exon 74778 75486 . - . ID=Physo156775.1;Parent=Physo156775;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 76076 76959 . + . ID=Physo156776;biotype=protein_coding;external_name=C_scaffold_27000010;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 76076 76959 . + . ID=Physo156776;Parent=Physo156776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 76076 76083 . + 0 ID=Physo156776;Parent=Physo156776;rank=1 scaffold_27 . exon 76076 76083 . + . ID=Physo156776.1;Parent=Physo156776;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 76363 76478 . + 0 ID=Physo156776;Parent=Physo156776;rank=2 scaffold_27 . exon 76363 76478 . + . ID=Physo156776.2;Parent=Physo156776;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 76567 76798 . + 0 ID=Physo156776;Parent=Physo156776;rank=3 scaffold_27 . exon 76567 76798 . + . ID=Physo156776.3;Parent=Physo156776;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . CDS 76881 76959 . + 0 ID=Physo156776;Parent=Physo156776;rank=4 scaffold_27 . exon 76881 76959 . + . ID=Physo156776.4;Parent=Physo156776;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 ensembl protein_coding_gene 77178 79248 . - . ID=Physo156779;biotype=protein_coding;external_name=C_scaffold_27000013;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 77178 79248 . - . ID=Physo156779;Parent=Physo156779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 77178 77495 . - 0 ID=Physo156779;Parent=Physo156779;rank=8 scaffold_27 . exon 77178 77495 . - . ID=Physo156779.8;Parent=Physo156779;constitutive=1;rank=8 scaffold_27 . CDS 77572 77664 . - 0 ID=Physo156779;Parent=Physo156779;rank=7 scaffold_27 . exon 77572 77664 . - . ID=Physo156779.7;Parent=Physo156779;constitutive=1;rank=7 scaffold_27 . CDS 77944 78052 . - 0 ID=Physo156779;Parent=Physo156779;rank=6 scaffold_27 . exon 77944 78052 . - . ID=Physo156779.6;Parent=Physo156779;constitutive=1;ensembl_phase=2;rank=6 scaffold_27 . CDS 78120 78195 . - 0 ID=Physo156779;Parent=Physo156779;rank=5 scaffold_27 . exon 78120 78195 . - . ID=Physo156779.5;Parent=Physo156779;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_27 . CDS 78273 78438 . - 0 ID=Physo156779;Parent=Physo156779;rank=4 scaffold_27 . exon 78273 78438 . - . ID=Physo156779.4;Parent=Physo156779;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_27 . CDS 78520 78571 . - 0 ID=Physo156779;Parent=Physo156779;rank=3 scaffold_27 . exon 78520 78571 . - . ID=Physo156779.3;Parent=Physo156779;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 78645 78969 . - 0 ID=Physo156779;Parent=Physo156779;rank=2 scaffold_27 . exon 78645 78969 . - . ID=Physo156779.2;Parent=Physo156779;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 79068 79248 . - 0 ID=Physo156779;Parent=Physo156779;rank=1 scaffold_27 . exon 79068 79248 . - . ID=Physo156779.1;Parent=Physo156779;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . biological_region 80311 80318 0.999 - . logic_name=eponine scaffold_27 . biological_region 83404 83404 0.999 + . logic_name=eponine scaffold_27 . biological_region 84950 84952 0.999 + . logic_name=eponine scaffold_27 . biological_region 84986 84990 0.999 - . logic_name=eponine scaffold_27 . repeat_region 87209 87295 . ? . description=dust scaffold_27 . repeat_region 87332 87378 . ? . description=dust scaffold_27 . repeat_region 89173 89184 . ? . description=dust scaffold_27 ensembl protein_coding_gene 83248 84108 . - . ID=Physo115634;biotype=protein_coding;external_name=estExt_Genewise1.C_270077;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 83248 84108 . - . ID=Physo115634;Parent=Physo115634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 83248 83722 . - . ID=Physo115634.2;Parent=Physo115634;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_27 . CDS 83325 83722 . - 0 ID=Physo115634;Parent=Physo115634;rank=2 scaffold_27 . CDS 84060 84108 . - 0 ID=Physo115634;Parent=Physo115634;rank=1 scaffold_27 . exon 84060 84108 . - . ID=Physo115634.1;Parent=Physo115634;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 80511 82883 . + . ID=Physo133611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270023;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 80511 82883 . + . ID=Physo133611;Parent=Physo133611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 80511 82883 . + 0 ID=Physo133611;Parent=Physo133611;rank=1 scaffold_27 . exon 80511 82883 . + . ID=Physo133611.1;Parent=Physo133611;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 84520 86592 . - . ID=Physo133613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270025;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 84520 86592 . - . ID=Physo133613;Parent=Physo133613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 84520 86592 . - 0 ID=Physo133613;Parent=Physo133613;rank=1 scaffold_27 . exon 84520 86592 . - . ID=Physo133613.1;Parent=Physo133613;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 86994 89276 . + . ID=Physo133614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270026;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 86994 89276 . + . ID=Physo133614;Parent=Physo133614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 86994 87856 . + 0 ID=Physo133614;Parent=Physo133614;rank=1 scaffold_27 . exon 86994 87856 . + . ID=Physo133614.1;Parent=Physo133614;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 88075 88262 . + 0 ID=Physo133614;Parent=Physo133614;rank=2 scaffold_27 . exon 88075 88262 . + . ID=Physo133614.2;Parent=Physo133614;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 88364 88578 . + 0 ID=Physo133614;Parent=Physo133614;rank=3 scaffold_27 . exon 88364 88578 . + . ID=Physo133614.3;Parent=Physo133614;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 88814 89159 . + 0 ID=Physo133614;Parent=Physo133614;rank=4 scaffold_27 . exon 88814 89159 . + . ID=Physo133614.4;Parent=Physo133614;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_27 . CDS 89203 89276 . + 0 ID=Physo133614;Parent=Physo133614;rank=5 scaffold_27 . exon 89203 89276 . + . ID=Physo133614.5;Parent=Physo133614;constitutive=1;ensembl_phase=1;rank=5 scaffold_27 . repeat_region 93012 93032 . ? . description=trf scaffold_27 . repeat_region 94768 94788 . ? . description=trf scaffold_27 ensembl protein_coding_gene 91060 92246 . - . ID=Physo133615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270027;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 91060 92246 . - . ID=Physo133615;Parent=Physo133615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 91060 91129 . - 0 ID=Physo133615;Parent=Physo133615;rank=6 scaffold_27 . exon 91060 91129 . - . ID=Physo133615.6;Parent=Physo133615;constitutive=1;ensembl_phase=2;rank=6 scaffold_27 . CDS 91190 91354 . - 0 ID=Physo133615;Parent=Physo133615;rank=5 scaffold_27 . exon 91190 91354 . - . ID=Physo133615.5;Parent=Physo133615;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_27 . CDS 91428 91591 . - 0 ID=Physo133615;Parent=Physo133615;rank=4 scaffold_27 . exon 91428 91591 . - . ID=Physo133615.4;Parent=Physo133615;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 91678 91737 . - 0 ID=Physo133615;Parent=Physo133615;rank=3 scaffold_27 . exon 91678 91737 . - . ID=Physo133615.3;Parent=Physo133615;constitutive=1;rank=3 scaffold_27 . CDS 91843 91931 . - 0 ID=Physo133615;Parent=Physo133615;rank=2 scaffold_27 . exon 91843 91931 . - . ID=Physo133615.2;Parent=Physo133615;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 92012 92246 . - 0 ID=Physo133615;Parent=Physo133615;rank=1 scaffold_27 . exon 92012 92246 . - . ID=Physo133615.1;Parent=Physo133615;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 92377 93556 . + . ID=Physo133616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270028;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 92377 93556 . + . ID=Physo133616;Parent=Physo133616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 92377 92760 . + 0 ID=Physo133616;Parent=Physo133616;rank=1 scaffold_27 . exon 92377 92760 . + . ID=Physo133616.1;Parent=Physo133616;constitutive=1;rank=1 scaffold_27 . CDS 92843 92952 . + 0 ID=Physo133616;Parent=Physo133616;rank=2 scaffold_27 . exon 92843 92952 . + . ID=Physo133616.2;Parent=Physo133616;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 93037 93113 . + 0 ID=Physo133616;Parent=Physo133616;rank=3 scaffold_27 . exon 93037 93113 . + . ID=Physo133616.3;Parent=Physo133616;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 93182 93251 . + 0 ID=Physo133616;Parent=Physo133616;rank=4 scaffold_27 . exon 93182 93251 . + . ID=Physo133616.4;Parent=Physo133616;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_27 . CDS 93322 93409 . + 0 ID=Physo133616;Parent=Physo133616;rank=5 scaffold_27 . exon 93322 93556 . + . ID=Physo133616.5;Parent=Physo133616;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_27 ensembl protein_coding_gene 95014 95454 . + . ID=Physo133617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270029;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 95014 95454 . + . ID=Physo133617;Parent=Physo133617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 95014 95454 . + 0 ID=Physo133617;Parent=Physo133617;rank=1 scaffold_27 . exon 95014 95454 . + . ID=Physo133617.1;Parent=Physo133617;constitutive=1;rank=1 scaffold_27 . repeat_region 101435 101443 . ? . description=dust scaffold_27 . repeat_region 104901 105242 . + . description=Gypsy-1-I_PI-int scaffold_27 . repeat_region 105392 105408 . ? . description=dust scaffold_27 . biological_region 105440 105446 0.999 + . logic_name=eponine scaffold_27 . biological_region 105539 105543 0.999 + . logic_name=eponine scaffold_27 . biological_region 105556 105558 0.999 - . logic_name=eponine scaffold_27 . biological_region 106037 106041 0.999 - . logic_name=eponine scaffold_27 . biological_region 106060 106063 0.999 + . logic_name=eponine scaffold_27 . biological_region 106182 106186 0.999 + . logic_name=eponine scaffold_27 . biological_region 106185 106193 0.999 - . logic_name=eponine scaffold_27 . biological_region 106213 106216 0.999 - . logic_name=eponine scaffold_27 . repeat_region 106266 110265 . + . description=Gypsy-1-I_PI-int scaffold_27 . biological_region 106589 106593 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 109586 109975 . + . ID=Physo115644;biotype=protein_coding;external_name=estExt_Genewise1.C_270087;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 109586 109975 . + . ID=Physo115644;Parent=Physo115644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 109586 109975 . + . ID=Physo115644.1;Parent=Physo115644;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 109592 109975 . + 0 ID=Physo115644;Parent=Physo115644;rank=1 scaffold_27 ensembl protein_coding_gene 101922 102693 . + . ID=Physo133618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270030;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 101922 102693 . + . ID=Physo133618;Parent=Physo133618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 101922 102350 . + 0 ID=Physo133618;Parent=Physo133618;rank=1 scaffold_27 . exon 101922 102350 . + . ID=Physo133618.1;Parent=Physo133618;constitutive=1;rank=1 scaffold_27 . CDS 102429 102575 . + 0 ID=Physo133618;Parent=Physo133618;rank=2 scaffold_27 . exon 102429 102575 . + . ID=Physo133618.2;Parent=Physo133618;constitutive=1;rank=2 scaffold_27 . CDS 102691 102693 . + 0 ID=Physo133618;Parent=Physo133618;rank=3 scaffold_27 . exon 102691 102693 . + . ID=Physo133618.3;Parent=Physo133618;constitutive=1;rank=3 scaffold_27 ensembl protein_coding_gene 104822 105308 . + . ID=Physo133619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270031;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 104822 105308 . + . ID=Physo133619;Parent=Physo133619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 104822 105192 . + 0 ID=Physo133619;Parent=Physo133619;rank=1 scaffold_27 . exon 104822 105192 . + . ID=Physo133619.1;Parent=Physo133619;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 105263 105308 . + 0 ID=Physo133619;Parent=Physo133619;rank=2 scaffold_27 . exon 105263 105308 . + . ID=Physo133619.2;Parent=Physo133619;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 ensembl protein_coding_gene 106372 106773 . + . ID=Physo133620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270032;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 106372 106773 . + . ID=Physo133620;Parent=Physo133620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 106372 106773 . + 0 ID=Physo133620;Parent=Physo133620;rank=1 scaffold_27 . exon 106372 106773 . + . ID=Physo133620.1;Parent=Physo133620;constitutive=1;rank=1 scaffold_27 . repeat_region 110567 110610 . ? . description=trf scaffold_27 . repeat_region 113811 113924 . ? . description=trf scaffold_27 . repeat_region 113811 113943 . ? . description=trf scaffold_27 . repeat_region 115125 115157 . ? . description=trf scaffold_27 ensembl protein_coding_gene 112392 113470 . + . ID=Physo133621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270033;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 112392 113470 . + . ID=Physo133621;Parent=Physo133621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 112392 112420 . + 0 ID=Physo133621;Parent=Physo133621;rank=1 scaffold_27 . exon 112392 112420 . + . ID=Physo133621.1;Parent=Physo133621;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 112559 112611 . + 0 ID=Physo133621;Parent=Physo133621;rank=2 scaffold_27 . exon 112559 112611 . + . ID=Physo133621.2;Parent=Physo133621;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 112842 113470 . + 0 ID=Physo133621;Parent=Physo133621;rank=3 scaffold_27 . exon 112842 113470 . + . ID=Physo133621.3;Parent=Physo133621;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . repeat_region 120953 120960 . ? . description=dust scaffold_27 . repeat_region 121829 121837 . ? . description=dust scaffold_27 . repeat_region 123602 123609 . ? . description=dust scaffold_27 . repeat_region 127922 127929 . ? . description=dust scaffold_27 ensembl protein_coding_gene 123574 125175 . - . ID=Physo133622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270034;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 123574 125175 . - . ID=Physo133622;Parent=Physo133622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 123574 123587 . - 0 ID=Physo133622;Parent=Physo133622;rank=5 scaffold_27 . exon 123574 123587 . - . ID=Physo133622.5;Parent=Physo133622;constitutive=1;ensembl_phase=1;rank=5 scaffold_27 . CDS 123661 124136 . - 0 ID=Physo133622;Parent=Physo133622;rank=4 scaffold_27 . exon 123661 124136 . - . ID=Physo133622.4;Parent=Physo133622;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 124367 124475 . - 0 ID=Physo133622;Parent=Physo133622;rank=3 scaffold_27 . exon 124367 124475 . - . ID=Physo133622.3;Parent=Physo133622;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . CDS 124521 124612 . - 0 ID=Physo133622;Parent=Physo133622;rank=2 scaffold_27 . exon 124521 124612 . - . ID=Physo133622.2;Parent=Physo133622;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 124775 125175 . - 0 ID=Physo133622;Parent=Physo133622;rank=1 scaffold_27 . exon 124775 125175 . - . ID=Physo133622.1;Parent=Physo133622;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . repeat_region 130103 130219 . ? . description=trf scaffold_27 . repeat_region 130495 130652 . ? . description=trf scaffold_27 . repeat_region 132178 132788 . ? . description=trf scaffold_27 . repeat_region 132184 132788 . + . description=(TAGA)n scaffold_27 . repeat_region 133511 133593 . ? . description=trf scaffold_27 . biological_region 133748 133756 0.999 + . logic_name=eponine scaffold_27 . repeat_region 141892 141899 . ? . description=dust scaffold_27 . repeat_region 142528 142541 . ? . description=dust scaffold_27 . repeat_region 148802 148809 . ? . description=dust scaffold_27 ensembl protein_coding_gene 140406 141575 . - . ID=Physo133623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270035;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 140406 141575 . - . ID=Physo133623;Parent=Physo133623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 140406 141575 . - 0 ID=Physo133623;Parent=Physo133623;rank=1 scaffold_27 . exon 140406 141575 . - . ID=Physo133623.1;Parent=Physo133623;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 145084 145959 . - . ID=Physo133624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270036;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 145084 145959 . - . ID=Physo133624;Parent=Physo133624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 145084 145126 . - 0 ID=Physo133624;Parent=Physo133624;rank=3 scaffold_27 . exon 145084 145126 . - . ID=Physo133624.3;Parent=Physo133624;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 145345 145902 . - 0 ID=Physo133624;Parent=Physo133624;rank=2 scaffold_27 . exon 145345 145902 . - . ID=Physo133624.2;Parent=Physo133624;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_27 . CDS 145925 145959 . - 0 ID=Physo133624;Parent=Physo133624;rank=1 scaffold_27 . exon 145925 145959 . - . ID=Physo133624.1;Parent=Physo133624;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 ensembl protein_coding_gene 146159 147057 . + . ID=Physo133625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270037;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 146159 147057 . + . ID=Physo133625;Parent=Physo133625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 146159 146372 . + 0 ID=Physo133625;Parent=Physo133625;rank=1 scaffold_27 . exon 146159 146372 . + . ID=Physo133625.1;Parent=Physo133625;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 146434 146982 . + 0 ID=Physo133625;Parent=Physo133625;rank=2 scaffold_27 . exon 146434 146982 . + . ID=Physo133625.2;Parent=Physo133625;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 147041 147057 . + 0 ID=Physo133625;Parent=Physo133625;rank=3 scaffold_27 . exon 147041 147057 . + . ID=Physo133625.3;Parent=Physo133625;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . repeat_region 149737 149825 . ? . description=trf scaffold_27 . repeat_region 149752 149824 . ? . description=trf scaffold_27 . repeat_region 149948 150098 . ? . description=trf scaffold_27 . repeat_region 150392 150453 . ? . description=trf scaffold_27 ensembl protein_coding_gene 150230 150859 . + . ID=Physo133626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270038;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 150230 150859 . + . ID=Physo133626;Parent=Physo133626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 150230 150859 . + 0 ID=Physo133626;Parent=Physo133626;rank=1 scaffold_27 . exon 150230 150859 . + . ID=Physo133626.1;Parent=Physo133626;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 153553 154448 . + . ID=Physo133627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270039;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 153553 154448 . + . ID=Physo133627;Parent=Physo133627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 153553 153842 . + 0 ID=Physo133627;Parent=Physo133627;rank=1 scaffold_27 . exon 153553 153842 . + . ID=Physo133627.1;Parent=Physo133627;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 153887 154448 . + 0 ID=Physo133627;Parent=Physo133627;rank=2 scaffold_27 . exon 153887 154448 . + . ID=Physo133627.2;Parent=Physo133627;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 ensembl protein_coding_gene 156144 157394 . + . ID=Physo133628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270040;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 156144 157394 . + . ID=Physo133628;Parent=Physo133628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 156144 157394 . + 0 ID=Physo133628;Parent=Physo133628;rank=1 scaffold_27 . exon 156144 157394 . + . ID=Physo133628.1;Parent=Physo133628;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 162440 162952 . - . ID=Physo133629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270041;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 162440 162952 . - . ID=Physo133629;Parent=Physo133629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 162440 162557 . - 0 ID=Physo133629;Parent=Physo133629;rank=2 scaffold_27 . exon 162440 162557 . - . ID=Physo133629.2;Parent=Physo133629;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 162630 162952 . - 0 ID=Physo133629;Parent=Physo133629;rank=1 scaffold_27 . exon 162630 162952 . - . ID=Physo133629.1;Parent=Physo133629;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . biological_region 170550 170551 0.999 + . logic_name=eponine scaffold_27 . biological_region 170589 170593 0.999 - . logic_name=eponine scaffold_27 . biological_region 170883 170888 0.999 + . logic_name=eponine scaffold_27 . biological_region 170885 170885 0.999 - . logic_name=eponine scaffold_27 . biological_region 173128 173135 0.999 - . logic_name=eponine scaffold_27 . biological_region 173185 173191 0.999 + . logic_name=eponine scaffold_27 . biological_region 173223 173229 0.999 + . logic_name=eponine scaffold_27 . biological_region 173241 173246 0.999 - . logic_name=eponine scaffold_27 . biological_region 173260 173263 0.999 - . logic_name=eponine scaffold_27 . biological_region 173277 173282 0.999 - . logic_name=eponine scaffold_27 . biological_region 173314 173321 0.999 - . logic_name=eponine scaffold_27 . repeat_region 173509 173604 . ? . description=trf scaffold_27 . biological_region 174278 174285 0.999 - . logic_name=eponine scaffold_27 . biological_region 175327 175327 0.999 - . logic_name=eponine scaffold_27 . biological_region 177077 177082 0.999 + . logic_name=eponine scaffold_27 . repeat_region 177119 177155 . ? . description=trf scaffold_27 . repeat_region 177138 177173 . ? . description=trf scaffold_27 . biological_region 177161 177164 0.999 + . logic_name=eponine scaffold_27 . biological_region 177282 177285 0.999 + . logic_name=eponine scaffold_27 . biological_region 177991 177992 0.999 - . logic_name=eponine scaffold_27 . biological_region 178045 178049 0.999 + . logic_name=eponine scaffold_27 . biological_region 178075 178076 0.999 + . logic_name=eponine scaffold_27 . biological_region 178129 178135 0.999 - . logic_name=eponine scaffold_27 . biological_region 178147 178148 0.999 - . logic_name=eponine scaffold_27 . biological_region 178282 178286 0.999 + . logic_name=eponine scaffold_27 . biological_region 178342 178348 0.999 - . logic_name=eponine scaffold_27 . biological_region 178401 178404 0.999 + . logic_name=eponine scaffold_27 . repeat_region 178491 178500 . ? . description=dust scaffold_27 . biological_region 178699 178702 0.999 + . logic_name=eponine scaffold_27 . biological_region 178743 178744 0.999 + . logic_name=eponine scaffold_27 . biological_region 178779 178784 0.999 - . logic_name=eponine scaffold_27 . biological_region 179109 179111 0.999 - . logic_name=eponine scaffold_27 . biological_region 179195 179197 0.999 + . logic_name=eponine scaffold_27 . biological_region 179267 179269 0.999 + . logic_name=eponine scaffold_27 . biological_region 179351 179353 0.999 + . logic_name=eponine scaffold_27 . biological_region 179378 179379 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 169678 171036 . - . ID=Physo133630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270042;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 169678 171036 . - . ID=Physo133630;Parent=Physo133630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 169678 171036 . - 0 ID=Physo133630;Parent=Physo133630;rank=1 scaffold_27 . exon 169678 171036 . - . ID=Physo133630.1;Parent=Physo133630;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 171608 173245 . - . ID=Physo133631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270043;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 171608 173245 . - . ID=Physo133631;Parent=Physo133631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 171608 173245 . - 0 ID=Physo133631;Parent=Physo133631;rank=1 scaffold_27 . exon 171608 173245 . - . ID=Physo133631.1;Parent=Physo133631;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 174603 175495 . + . ID=Physo133632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270044;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 174603 175495 . + . ID=Physo133632;Parent=Physo133632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 174603 174641 . + 0 ID=Physo133632;Parent=Physo133632;rank=1 scaffold_27 . exon 174603 174641 . + . ID=Physo133632.1;Parent=Physo133632;constitutive=1;rank=1 scaffold_27 . CDS 174711 174959 . + 0 ID=Physo133632;Parent=Physo133632;rank=2 scaffold_27 . exon 174711 174959 . + . ID=Physo133632.2;Parent=Physo133632;constitutive=1;rank=2 scaffold_27 . CDS 175038 175116 . + 0 ID=Physo133632;Parent=Physo133632;rank=3 scaffold_27 . exon 175038 175116 . + . ID=Physo133632.3;Parent=Physo133632;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 175214 175239 . + 0 ID=Physo133632;Parent=Physo133632;rank=4 scaffold_27 . exon 175214 175495 . + . ID=Physo133632.4;Parent=Physo133632;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_27 ensembl protein_coding_gene 175924 177408 . - . ID=Physo133633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270045;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 175924 177408 . - . ID=Physo133633;Parent=Physo133633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 175924 177408 . - 0 ID=Physo133633;Parent=Physo133633;rank=1 scaffold_27 . exon 175924 177408 . - . ID=Physo133633.1;Parent=Physo133633;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 181435 185075 . + . ID=Physo133634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270046;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 181435 185075 . + . ID=Physo133634;Parent=Physo133634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 181435 181841 . + 0 ID=Physo133634;Parent=Physo133634;rank=1 scaffold_27 . exon 181435 181841 . + . ID=Physo133634.1;Parent=Physo133634;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 182546 182945 . + 0 ID=Physo133634;Parent=Physo133634;rank=2 scaffold_27 . exon 182546 182945 . + . ID=Physo133634.2;Parent=Physo133634;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 183029 183273 . + 0 ID=Physo133634;Parent=Physo133634;rank=3 scaffold_27 . exon 183029 183273 . + . ID=Physo133634.3;Parent=Physo133634;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 183347 183587 . + 0 ID=Physo133634;Parent=Physo133634;rank=4 scaffold_27 . exon 183347 183587 . + . ID=Physo133634.4;Parent=Physo133634;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 183673 183761 . + 0 ID=Physo133634;Parent=Physo133634;rank=5 scaffold_27 . exon 183673 183761 . + . ID=Physo133634.5;Parent=Physo133634;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_27 . CDS 183848 183861 . + 0 ID=Physo133634;Parent=Physo133634;rank=6 scaffold_27 . exon 183848 183861 . + . ID=Physo133634.6;Parent=Physo133634;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_27 . CDS 184294 184314 . + 0 ID=Physo133634;Parent=Physo133634;rank=7 scaffold_27 . exon 184294 184314 . + . ID=Physo133634.7;Parent=Physo133634;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_27 . CDS 184375 185075 . + 0 ID=Physo133634;Parent=Physo133634;rank=8 scaffold_27 . exon 184375 185075 . + . ID=Physo133634.8;Parent=Physo133634;constitutive=1;ensembl_phase=1;rank=8 scaffold_27 ensembl protein_coding_gene 187922 189277 . + . ID=Physo133635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270047;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 187922 189277 . + . ID=Physo133635;Parent=Physo133635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 187922 188335 . + . ID=Physo133635.1;Parent=Physo133635;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 187967 188335 . + 0 ID=Physo133635;Parent=Physo133635;rank=1 scaffold_27 . CDS 188419 188663 . + 0 ID=Physo133635;Parent=Physo133635;rank=2 scaffold_27 . exon 188419 188663 . + . ID=Physo133635.2;Parent=Physo133635;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 188737 188977 . + 0 ID=Physo133635;Parent=Physo133635;rank=3 scaffold_27 . exon 188737 188977 . + . ID=Physo133635.3;Parent=Physo133635;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 189063 189151 . + 0 ID=Physo133635;Parent=Physo133635;rank=4 scaffold_27 . exon 189063 189151 . + . ID=Physo133635.4;Parent=Physo133635;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 189238 189277 . + 0 ID=Physo133635;Parent=Physo133635;rank=5 scaffold_27 . exon 189238 189277 . + . ID=Physo133635.5;Parent=Physo133635;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . biological_region 191100 191101 0.999 - . logic_name=eponine scaffold_27 . biological_region 192949 192949 0.999 - . logic_name=eponine scaffold_27 . biological_region 193117 193122 0.999 - . logic_name=eponine scaffold_27 . biological_region 197758 197760 0.999 + . logic_name=eponine scaffold_27 . repeat_region 198491 198548 . ? . description=dust scaffold_27 . biological_region 198549 198552 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 189631 190594 . - . ID=Physo108718;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_270003;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 189631 190594 . - . ID=Physo108718;Parent=Physo108718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 189631 190241 . - . ID=Physo108718.2;Parent=Physo108718;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_27 . CDS 189786 190241 . - 0 ID=Physo108718;Parent=Physo108718;rank=2 scaffold_27 . CDS 190569 190571 . - 0 ID=Physo108718;Parent=Physo108718;rank=1 scaffold_27 . exon 190569 190594 . - . ID=Physo108718.1;Parent=Physo108718;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 193935 198652 . - . ID=Physo133639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270051;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 193935 198652 . - . ID=Physo133639;Parent=Physo133639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 193935 196031 . - 0 ID=Physo133639;Parent=Physo133639;rank=4 scaffold_27 . exon 193935 196031 . - . ID=Physo133639.4;Parent=Physo133639;constitutive=1;rank=4 scaffold_27 . CDS 196109 196215 . - 0 ID=Physo133639;Parent=Physo133639;rank=3 scaffold_27 . exon 196109 196215 . - . ID=Physo133639.3;Parent=Physo133639;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 196258 198549 . - 0 ID=Physo133639;Parent=Physo133639;rank=2 scaffold_27 . exon 196258 198549 . - . ID=Physo133639.2;Parent=Physo133639;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 198625 198652 . - 0 ID=Physo133639;Parent=Physo133639;rank=1 scaffold_27 . exon 198625 198652 . - . ID=Physo133639.1;Parent=Physo133639;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 190950 192246 . + . ID=Physo156786;biotype=protein_coding;external_name=C_scaffold_27000020;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 190950 192246 . + . ID=Physo156786;Parent=Physo156786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 190950 191123 . + 0 ID=Physo156786;Parent=Physo156786;rank=1 scaffold_27 . exon 190950 191123 . + . ID=Physo156786.1;Parent=Physo156786;constitutive=1;rank=1 scaffold_27 . CDS 191216 191392 . + 0 ID=Physo156786;Parent=Physo156786;rank=2 scaffold_27 . exon 191216 191392 . + . ID=Physo156786.2;Parent=Physo156786;constitutive=1;rank=2 scaffold_27 . CDS 191485 191633 . + 0 ID=Physo156786;Parent=Physo156786;rank=3 scaffold_27 . exon 191485 191633 . + . ID=Physo156786.3;Parent=Physo156786;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 191715 191802 . + 0 ID=Physo156786;Parent=Physo156786;rank=4 scaffold_27 . exon 191715 191802 . + . ID=Physo156786.4;Parent=Physo156786;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 191882 192098 . + 0 ID=Physo156786;Parent=Physo156786;rank=5 scaffold_27 . exon 191882 192098 . + . ID=Physo156786.5;Parent=Physo156786;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_27 . CDS 192173 192246 . + 0 ID=Physo156786;Parent=Physo156786;rank=6 scaffold_27 . exon 192173 192246 . + . ID=Physo156786.6;Parent=Physo156786;constitutive=1;ensembl_phase=1;rank=6 scaffold_27 ensembl protein_coding_gene 192437 193477 . - . ID=Physo156787;biotype=protein_coding;external_name=C_scaffold_27000021;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 192437 193477 . - . ID=Physo156787;Parent=Physo156787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 192437 193477 . - 0 ID=Physo156787;Parent=Physo156787;rank=1 scaffold_27 . exon 192437 193477 . - . ID=Physo156787.1;Parent=Physo156787;constitutive=1;rank=1 scaffold_27 . repeat_region 200828 200847 . ? . description=trf scaffold_27 ensembl protein_coding_gene 200808 201856 . + . ID=Physo108721;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_270006;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 200808 201856 . + . ID=Physo108721;Parent=Physo108721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 200808 201851 . + 0 ID=Physo108721;Parent=Physo108721;rank=1 scaffold_27 . exon 200808 201856 . + . ID=Physo108721.1;Parent=Physo108721;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 203833 208160 . + . ID=Physo133641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270053;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 203833 208160 . + . ID=Physo133641;Parent=Physo133641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 203833 204156 . + 0 ID=Physo133641;Parent=Physo133641;rank=1 scaffold_27 . exon 203833 204156 . + . ID=Physo133641.1;Parent=Physo133641;constitutive=1;rank=1 scaffold_27 . CDS 204232 204429 . + 0 ID=Physo133641;Parent=Physo133641;rank=2 scaffold_27 . exon 204232 204429 . + . ID=Physo133641.2;Parent=Physo133641;constitutive=1;rank=2 scaffold_27 . CDS 204504 208160 . + 0 ID=Physo133641;Parent=Physo133641;rank=3 scaffold_27 . exon 204504 208160 . + . ID=Physo133641.3;Parent=Physo133641;constitutive=1;rank=3 scaffold_27 ensembl protein_coding_gene 208958 211282 . + . ID=Physo133642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270054;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 208958 211282 . + . ID=Physo133642;Parent=Physo133642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 208958 211282 . + 0 ID=Physo133642;Parent=Physo133642;rank=1 scaffold_27 . exon 208958 211282 . + . ID=Physo133642.1;Parent=Physo133642;constitutive=1;rank=1 scaffold_27 . repeat_region 213320 213397 . ? . description=dust scaffold_27 . repeat_region 216010 216021 . ? . description=dust scaffold_27 . repeat_region 217403 219438 . ? . description=dust scaffold_27 ensembl protein_coding_gene 213043 215348 . + . ID=Physo133643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270055;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 213043 215348 . + . ID=Physo133643;Parent=Physo133643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 213043 213310 . + 0 ID=Physo133643;Parent=Physo133643;rank=1 scaffold_27 . exon 213043 213310 . + . ID=Physo133643.1;Parent=Physo133643;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 213430 215348 . + 0 ID=Physo133643;Parent=Physo133643;rank=2 scaffold_27 . exon 213430 215348 . + . ID=Physo133643.2;Parent=Physo133643;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 ensembl protein_coding_gene 216146 217326 . + . ID=Physo133644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270056;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 216146 217326 . + . ID=Physo133644;Parent=Physo133644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 216146 217259 . + 0 ID=Physo133644;Parent=Physo133644;rank=1 scaffold_27 . exon 216146 217259 . + . ID=Physo133644.1;Parent=Physo133644;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 217304 217326 . + 0 ID=Physo133644;Parent=Physo133644;rank=2 scaffold_27 . exon 217304 217326 . + . ID=Physo133644.2;Parent=Physo133644;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . repeat_region 220922 220960 . ? . description=trf scaffold_27 . biological_region 221700 221706 0.999 + . logic_name=eponine scaffold_27 . biological_region 222821 222821 0.999 + . logic_name=eponine scaffold_27 . repeat_region 226659 226698 . ? . description=trf scaffold_27 . repeat_region 226680 226775 . ? . description=trf scaffold_27 . repeat_region 226901 226937 . ? . description=trf scaffold_27 . repeat_region 226914 226933 . ? . description=trf scaffold_27 . biological_region 227230 227235 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 219648 222989 . + . ID=Physo133645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270057;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 219648 222989 . + . ID=Physo133645;Parent=Physo133645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 219648 221340 . + 0 ID=Physo133645;Parent=Physo133645;rank=1 scaffold_27 . exon 219648 221340 . + . ID=Physo133645.1;Parent=Physo133645;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 221486 222058 . + 0 ID=Physo133645;Parent=Physo133645;rank=2 scaffold_27 . exon 221486 222058 . + . ID=Physo133645.2;Parent=Physo133645;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 222128 222289 . + 0 ID=Physo133645;Parent=Physo133645;rank=3 scaffold_27 . exon 222128 222289 . + . ID=Physo133645.3;Parent=Physo133645;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 222358 222989 . + 0 ID=Physo133645;Parent=Physo133645;rank=4 scaffold_27 . exon 222358 222989 . + . ID=Physo133645.4;Parent=Physo133645;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 ensembl protein_coding_gene 223204 224866 . + . ID=Physo133646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270058;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 223204 224866 . + . ID=Physo133646;Parent=Physo133646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 223204 223384 . + 0 ID=Physo133646;Parent=Physo133646;rank=1 scaffold_27 . exon 223204 223384 . + . ID=Physo133646.1;Parent=Physo133646;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 223452 223537 . + 0 ID=Physo133646;Parent=Physo133646;rank=2 scaffold_27 . exon 223452 223537 . + . ID=Physo133646.2;Parent=Physo133646;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 223603 223648 . + 0 ID=Physo133646;Parent=Physo133646;rank=3 scaffold_27 . exon 223603 223648 . + . ID=Physo133646.3;Parent=Physo133646;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 223721 223760 . + 0 ID=Physo133646;Parent=Physo133646;rank=4 scaffold_27 . exon 223721 223760 . + . ID=Physo133646.4;Parent=Physo133646;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_27 . CDS 223843 224043 . + 0 ID=Physo133646;Parent=Physo133646;rank=5 scaffold_27 . exon 223843 224043 . + . ID=Physo133646.5;Parent=Physo133646;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_27 . CDS 224113 224193 . + 0 ID=Physo133646;Parent=Physo133646;rank=6 scaffold_27 . exon 224113 224193 . + . ID=Physo133646.6;Parent=Physo133646;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_27 . CDS 224277 224357 . + 0 ID=Physo133646;Parent=Physo133646;rank=7 scaffold_27 . exon 224277 224357 . + . ID=Physo133646.7;Parent=Physo133646;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_27 . CDS 224444 224534 . + 0 ID=Physo133646;Parent=Physo133646;rank=8 scaffold_27 . exon 224444 224534 . + . ID=Physo133646.8;Parent=Physo133646;constitutive=1;ensembl_phase=2;rank=8 scaffold_27 . CDS 224609 224797 . + 0 ID=Physo133646;Parent=Physo133646;rank=9 scaffold_27 . exon 224609 224866 . + . ID=Physo133646.9;Parent=Physo133646;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_27 ensembl protein_coding_gene 225073 227217 . - . ID=Physo133647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270059;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 225073 227217 . - . ID=Physo133647;Parent=Physo133647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 225073 225081 . - 0 ID=Physo133647;Parent=Physo133647;rank=3 scaffold_27 . exon 225073 225081 . - . ID=Physo133647.3;Parent=Physo133647;constitutive=1;rank=3 scaffold_27 . CDS 225303 227057 . - 0 ID=Physo133647;Parent=Physo133647;rank=2 scaffold_27 . exon 225303 227057 . - . ID=Physo133647.2;Parent=Physo133647;constitutive=1;rank=2 scaffold_27 . CDS 227137 227217 . - 0 ID=Physo133647;Parent=Physo133647;rank=1 scaffold_27 . exon 227137 227217 . - . ID=Physo133647.1;Parent=Physo133647;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 227492 229372 . + . ID=Physo133648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270060;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 227492 229372 . + . ID=Physo133648;Parent=Physo133648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 227492 227846 . + 0 ID=Physo133648;Parent=Physo133648;rank=1 scaffold_27 . exon 227492 227846 . + . ID=Physo133648.1;Parent=Physo133648;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 227916 228021 . + 0 ID=Physo133648;Parent=Physo133648;rank=2 scaffold_27 . exon 227916 228021 . + . ID=Physo133648.2;Parent=Physo133648;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 228108 228399 . + 0 ID=Physo133648;Parent=Physo133648;rank=3 scaffold_27 . exon 228108 228399 . + . ID=Physo133648.3;Parent=Physo133648;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 228505 228623 . + 0 ID=Physo133648;Parent=Physo133648;rank=4 scaffold_27 . exon 228505 228623 . + . ID=Physo133648.4;Parent=Physo133648;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 228692 228765 . + 0 ID=Physo133648;Parent=Physo133648;rank=5 scaffold_27 . exon 228692 228765 . + . ID=Physo133648.5;Parent=Physo133648;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 228849 228927 . + 0 ID=Physo133648;Parent=Physo133648;rank=6 scaffold_27 . exon 228849 228927 . + . ID=Physo133648.6;Parent=Physo133648;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_27 . CDS 228998 229077 . + 0 ID=Physo133648;Parent=Physo133648;rank=7 scaffold_27 . exon 228998 229077 . + . ID=Physo133648.7;Parent=Physo133648;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_27 . CDS 229156 229226 . + 0 ID=Physo133648;Parent=Physo133648;rank=8 scaffold_27 . exon 229156 229372 . + . ID=Physo133648.8;Parent=Physo133648;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=8 scaffold_27 ensembl protein_coding_gene 229446 230819 . - . ID=Physo133649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270061;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 229446 230819 . - . ID=Physo133649;Parent=Physo133649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 229446 230819 . - 0 ID=Physo133649;Parent=Physo133649;rank=1 scaffold_27 . exon 229446 230819 . - . ID=Physo133649.1;Parent=Physo133649;constitutive=1;rank=1 scaffold_27 . repeat_region 231119 231137 . ? . description=dust scaffold_27 . repeat_region 234626 234670 . ? . description=dust scaffold_27 . repeat_region 238795 238920 . ? . description=dust scaffold_27 ensembl protein_coding_gene 231009 233045 . + . ID=Physo133650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270062;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 231009 233045 . + . ID=Physo133650;Parent=Physo133650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 231009 233045 . + 0 ID=Physo133650;Parent=Physo133650;rank=1 scaffold_27 . exon 231009 233045 . + . ID=Physo133650.1;Parent=Physo133650;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 233252 235130 . - . ID=Physo156790;biotype=protein_coding;external_name=C_scaffold_27000024;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 233252 235130 . - . ID=Physo156790;Parent=Physo156790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 233252 233341 . - 0 ID=Physo156790;Parent=Physo156790;rank=4 scaffold_27 . exon 233252 233341 . - . ID=Physo156790.4;Parent=Physo156790;constitutive=1;rank=4 scaffold_27 . CDS 233367 233837 . - 0 ID=Physo156790;Parent=Physo156790;rank=3 scaffold_27 . exon 233367 233837 . - . ID=Physo156790.3;Parent=Physo156790;constitutive=1;rank=3 scaffold_27 . CDS 233880 234182 . - 0 ID=Physo156790;Parent=Physo156790;rank=2 scaffold_27 . exon 233880 234182 . - . ID=Physo156790.2;Parent=Physo156790;constitutive=1;rank=2 scaffold_27 . CDS 234207 235130 . - 0 ID=Physo156790;Parent=Physo156790;rank=1 scaffold_27 . exon 234207 235130 . - . ID=Physo156790.1;Parent=Physo156790;constitutive=1;rank=1 scaffold_27 . biological_region 242447 242447 0.999 - . logic_name=eponine scaffold_27 . biological_region 242906 242906 0.999 - . logic_name=eponine scaffold_27 . biological_region 242989 242989 0.999 + . logic_name=eponine scaffold_27 . biological_region 243048 243053 0.999 + . logic_name=eponine scaffold_27 . biological_region 243095 243097 0.999 - . logic_name=eponine scaffold_27 . repeat_region 249095 249151 . ? . description=trf scaffold_27 . biological_region 249294 249300 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 239636 241223 . + . ID=Physo133652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270064;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 239636 241223 . + . ID=Physo133652;Parent=Physo133652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 239636 241223 . + . ID=Physo133652.1;Parent=Physo133652;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 239649 241223 . + 0 ID=Physo133652;Parent=Physo133652;rank=1 scaffold_27 ensembl protein_coding_gene 242356 243627 . + . ID=Physo133653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270065;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 242356 243627 . + . ID=Physo133653;Parent=Physo133653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 242356 243627 . + 0 ID=Physo133653;Parent=Physo133653;rank=1 scaffold_27 . exon 242356 243627 . + . ID=Physo133653.1;Parent=Physo133653;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 243731 249082 . - . ID=Physo156792;biotype=protein_coding;external_name=C_scaffold_27000026;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 243731 249082 . - . ID=Physo156792;Parent=Physo156792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 243731 245073 . - 0 ID=Physo156792;Parent=Physo156792;rank=12 scaffold_27 . exon 243731 245073 . - . ID=Physo156792.12;Parent=Physo156792;constitutive=1;ensembl_phase=1;rank=12 scaffold_27 . CDS 245182 245365 . - 0 ID=Physo156792;Parent=Physo156792;rank=11 scaffold_27 . exon 245182 245365 . - . ID=Physo156792.11;Parent=Physo156792;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_27 . CDS 245485 245512 . - 0 ID=Physo156792;Parent=Physo156792;rank=10 scaffold_27 . exon 245485 245512 . - . ID=Physo156792.10;Parent=Physo156792;constitutive=1;ensembl_phase=2;rank=10 scaffold_27 . CDS 245556 246396 . - 0 ID=Physo156792;Parent=Physo156792;rank=9 scaffold_27 . exon 245556 246396 . - . ID=Physo156792.9;Parent=Physo156792;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_27 . CDS 246442 247307 . - 0 ID=Physo156792;Parent=Physo156792;rank=8 scaffold_27 . exon 246442 247307 . - . ID=Physo156792.8;Parent=Physo156792;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_27 . CDS 247373 247581 . - 0 ID=Physo156792;Parent=Physo156792;rank=7 scaffold_27 . exon 247373 247581 . - . ID=Physo156792.7;Parent=Physo156792;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_27 . CDS 247838 248056 . - 0 ID=Physo156792;Parent=Physo156792;rank=6 scaffold_27 . exon 247838 248056 . - . ID=Physo156792.6;Parent=Physo156792;constitutive=1;rank=6 scaffold_27 . CDS 248235 248366 . - 0 ID=Physo156792;Parent=Physo156792;rank=5 scaffold_27 . exon 248235 248366 . - . ID=Physo156792.5;Parent=Physo156792;constitutive=1;rank=5 scaffold_27 . CDS 248461 248539 . - 0 ID=Physo156792;Parent=Physo156792;rank=4 scaffold_27 . exon 248461 248539 . - . ID=Physo156792.4;Parent=Physo156792;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 248625 248707 . - 0 ID=Physo156792;Parent=Physo156792;rank=3 scaffold_27 . exon 248625 248707 . - . ID=Physo156792.3;Parent=Physo156792;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 248782 248850 . - 0 ID=Physo156792;Parent=Physo156792;rank=2 scaffold_27 . exon 248782 248850 . - . ID=Physo156792.2;Parent=Physo156792;constitutive=1;rank=2 scaffold_27 . CDS 248918 249082 . - 0 ID=Physo156792;Parent=Physo156792;rank=1 scaffold_27 . exon 248918 249082 . - . ID=Physo156792.1;Parent=Physo156792;constitutive=1;rank=1 scaffold_27 . repeat_region 249849 249870 . ? . description=dust scaffold_27 . repeat_region 250017 250024 . ? . description=dust scaffold_27 . repeat_region 250946 250953 . ? . description=dust scaffold_27 . repeat_region 252947 252992 . ? . description=dust scaffold_27 . repeat_region 253173 253222 . ? . description=dust scaffold_27 . repeat_region 254553 255332 . ? . description=dust scaffold_27 ensembl protein_coding_gene 249554 252895 . + . ID=Physo133655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270067;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 249554 252895 . + . ID=Physo133655;Parent=Physo133655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 249554 249790 . + 0 ID=Physo133655;Parent=Physo133655;rank=1 scaffold_27 . exon 249554 249790 . + . ID=Physo133655.1;Parent=Physo133655;constitutive=1;rank=1 scaffold_27 . CDS 249866 249973 . + 0 ID=Physo133655;Parent=Physo133655;rank=2 scaffold_27 . exon 249866 249973 . + . ID=Physo133655.2;Parent=Physo133655;constitutive=1;rank=2 scaffold_27 . CDS 250061 250159 . + 0 ID=Physo133655;Parent=Physo133655;rank=3 scaffold_27 . exon 250061 250159 . + . ID=Physo133655.3;Parent=Physo133655;constitutive=1;rank=3 scaffold_27 . CDS 250235 250439 . + 0 ID=Physo133655;Parent=Physo133655;rank=4 scaffold_27 . exon 250235 250439 . + . ID=Physo133655.4;Parent=Physo133655;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_27 . CDS 250522 250668 . + 0 ID=Physo133655;Parent=Physo133655;rank=5 scaffold_27 . exon 250522 250668 . + . ID=Physo133655.5;Parent=Physo133655;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_27 . CDS 250810 250940 . + 0 ID=Physo133655;Parent=Physo133655;rank=6 scaffold_27 . exon 250810 250940 . + . ID=Physo133655.6;Parent=Physo133655;constitutive=1;ensembl_phase=1;rank=6 scaffold_27 . CDS 251012 252895 . + 0 ID=Physo133655;Parent=Physo133655;rank=7 scaffold_27 . exon 251012 252895 . + . ID=Physo133655.7;Parent=Physo133655;constitutive=1;rank=7 scaffold_27 ensembl protein_coding_gene 255993 258266 . + . ID=Physo133656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270068;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 255993 258266 . + . ID=Physo133656;Parent=Physo133656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 255993 256094 . + 0 ID=Physo133656;Parent=Physo133656;rank=1 scaffold_27 . exon 255993 256094 . + . ID=Physo133656.1;Parent=Physo133656;constitutive=1;rank=1 scaffold_27 . CDS 256131 256442 . + 0 ID=Physo133656;Parent=Physo133656;rank=2 scaffold_27 . exon 256131 256442 . + . ID=Physo133656.2;Parent=Physo133656;constitutive=1;rank=2 scaffold_27 . CDS 256697 256780 . + 0 ID=Physo133656;Parent=Physo133656;rank=3 scaffold_27 . exon 256697 256780 . + . ID=Physo133656.3;Parent=Physo133656;constitutive=1;rank=3 scaffold_27 . CDS 256817 256921 . + 0 ID=Physo133656;Parent=Physo133656;rank=4 scaffold_27 . exon 256817 256921 . + . ID=Physo133656.4;Parent=Physo133656;constitutive=1;rank=4 scaffold_27 . CDS 257054 257130 . + 0 ID=Physo133656;Parent=Physo133656;rank=5 scaffold_27 . exon 257054 257130 . + . ID=Physo133656.5;Parent=Physo133656;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_27 . CDS 257213 258266 . + 0 ID=Physo133656;Parent=Physo133656;rank=6 scaffold_27 . exon 257213 258266 . + . ID=Physo133656.6;Parent=Physo133656;constitutive=1;ensembl_phase=2;rank=6 scaffold_27 ensembl protein_coding_gene 258718 259905 . + . ID=Physo133657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270069;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 258718 259905 . + . ID=Physo133657;Parent=Physo133657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 258718 259905 . + 0 ID=Physo133657;Parent=Physo133657;rank=1 scaffold_27 . exon 258718 259905 . + . ID=Physo133657.1;Parent=Physo133657;constitutive=1;rank=1 scaffold_27 . biological_region 260828 260829 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 260012 263013 . - . ID=Physo133658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270070;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 260012 263013 . - . ID=Physo133658;Parent=Physo133658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 260012 261670 . - 0 ID=Physo133658;Parent=Physo133658;rank=4 scaffold_27 . exon 260012 261670 . - . ID=Physo133658.4;Parent=Physo133658;constitutive=1;rank=4 scaffold_27 . CDS 261736 262060 . - 0 ID=Physo133658;Parent=Physo133658;rank=3 scaffold_27 . exon 261736 262060 . - . ID=Physo133658.3;Parent=Physo133658;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 262126 262714 . - 0 ID=Physo133658;Parent=Physo133658;rank=2 scaffold_27 . exon 262126 262714 . - . ID=Physo133658.2;Parent=Physo133658;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 262785 263013 . - 0 ID=Physo133658;Parent=Physo133658;rank=1 scaffold_27 . exon 262785 263013 . - . ID=Physo133658.1;Parent=Physo133658;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . repeat_region 271731 272149 . ? . description=dust scaffold_27 . repeat_region 278250 278299 . ? . description=dust scaffold_27 . repeat_region 278385 278392 . ? . description=dust scaffold_27 ensembl protein_coding_gene 270431 271103 . + . ID=Physo133659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270071;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 270431 271103 . + . ID=Physo133659;Parent=Physo133659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 270431 270676 . + 0 ID=Physo133659;Parent=Physo133659;rank=1 scaffold_27 . exon 270431 270676 . + . ID=Physo133659.1;Parent=Physo133659;constitutive=1;rank=1 scaffold_27 . CDS 270755 270828 . + 0 ID=Physo133659;Parent=Physo133659;rank=2 scaffold_27 . exon 270755 270828 . + . ID=Physo133659.2;Parent=Physo133659;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 270911 271103 . + 0 ID=Physo133659;Parent=Physo133659;rank=3 scaffold_27 . exon 270911 271103 . + . ID=Physo133659.3;Parent=Physo133659;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 ensembl protein_coding_gene 271597 273065 . - . ID=Physo133660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270072;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 271597 273065 . - . ID=Physo133660;Parent=Physo133660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 271597 271692 . - 0 ID=Physo133660;Parent=Physo133660;rank=2 scaffold_27 . exon 271597 271692 . - . ID=Physo133660.2;Parent=Physo133660;constitutive=1;rank=2 scaffold_27 . CDS 272217 273065 . - 0 ID=Physo133660;Parent=Physo133660;rank=1 scaffold_27 . exon 272217 273065 . - . ID=Physo133660.1;Parent=Physo133660;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 273122 273999 . - . ID=Physo133661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270073;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 273122 273999 . - . ID=Physo133661;Parent=Physo133661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 273122 273451 . - . ID=Physo133661.4;Parent=Physo133661;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_27 . CDS 273281 273451 . - 0 ID=Physo133661;Parent=Physo133661;rank=4 scaffold_27 . CDS 273524 273679 . - 0 ID=Physo133661;Parent=Physo133661;rank=3 scaffold_27 . exon 273524 273679 . - . ID=Physo133661.3;Parent=Physo133661;constitutive=1;rank=3 scaffold_27 . CDS 273749 273844 . - 0 ID=Physo133661;Parent=Physo133661;rank=2 scaffold_27 . exon 273749 273844 . - . ID=Physo133661.2;Parent=Physo133661;constitutive=1;rank=2 scaffold_27 . CDS 273915 273935 . - 0 ID=Physo133661;Parent=Physo133661;rank=1 scaffold_27 . exon 273915 273999 . - . ID=Physo133661.1;Parent=Physo133661;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 274258 275498 . + . ID=Physo133662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270074;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 274258 275498 . + . ID=Physo133662;Parent=Physo133662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 274258 275312 . + 0 ID=Physo133662;Parent=Physo133662;rank=1 scaffold_27 . exon 274258 275312 . + . ID=Physo133662.1;Parent=Physo133662;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 275456 275498 . + 0 ID=Physo133662;Parent=Physo133662;rank=2 scaffold_27 . exon 275456 275498 . + . ID=Physo133662.2;Parent=Physo133662;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 ensembl protein_coding_gene 277888 278249 . + . ID=Physo156797;biotype=protein_coding;external_name=C_scaffold_27000031;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 277888 278249 . + . ID=Physo156797;Parent=Physo156797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 277888 278183 . + 0 ID=Physo156797;Parent=Physo156797;rank=1 scaffold_27 . exon 277888 278183 . + . ID=Physo156797.1;Parent=Physo156797;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 278237 278249 . + 0 ID=Physo156797;Parent=Physo156797;rank=2 scaffold_27 . exon 278237 278249 . + . ID=Physo156797.2;Parent=Physo156797;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . repeat_region 283255 283278 . ? . description=trf scaffold_27 . repeat_region 283388 283409 . ? . description=trf scaffold_27 . biological_region 283818 283819 0.999 + . logic_name=eponine scaffold_27 . biological_region 286951 286954 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 281394 287586 . + . ID=Physo133663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270075;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 281394 287586 . + . ID=Physo133663;Parent=Physo133663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 281394 282553 . + 0 ID=Physo133663;Parent=Physo133663;rank=1 scaffold_27 . exon 281394 282553 . + . ID=Physo133663.1;Parent=Physo133663;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 282920 283627 . + 0 ID=Physo133663;Parent=Physo133663;rank=2 scaffold_27 . exon 282920 283627 . + . ID=Physo133663.2;Parent=Physo133663;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_27 . CDS 283791 284061 . + 0 ID=Physo133663;Parent=Physo133663;rank=3 scaffold_27 . exon 283791 284061 . + . ID=Physo133663.3;Parent=Physo133663;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 284155 284203 . + 0 ID=Physo133663;Parent=Physo133663;rank=4 scaffold_27 . exon 284155 284203 . + . ID=Physo133663.4;Parent=Physo133663;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_27 . CDS 284280 284391 . + 0 ID=Physo133663;Parent=Physo133663;rank=5 scaffold_27 . exon 284280 284391 . + . ID=Physo133663.5;Parent=Physo133663;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_27 . CDS 284469 287586 . + 0 ID=Physo133663;Parent=Physo133663;rank=6 scaffold_27 . exon 284469 287586 . + . ID=Physo133663.6;Parent=Physo133663;constitutive=1;ensembl_phase=2;rank=6 scaffold_27 ensembl protein_coding_gene 287658 289814 . - . ID=Physo133664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270076;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 287658 289814 . - . ID=Physo133664;Parent=Physo133664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 287658 287797 . - 0 ID=Physo133664;Parent=Physo133664;rank=4 scaffold_27 . exon 287658 287797 . - . ID=Physo133664.4;Parent=Physo133664;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . CDS 287872 288932 . - 0 ID=Physo133664;Parent=Physo133664;rank=3 scaffold_27 . exon 287872 288932 . - . ID=Physo133664.3;Parent=Physo133664;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 288965 289535 . - 0 ID=Physo133664;Parent=Physo133664;rank=2 scaffold_27 . exon 288965 289535 . - . ID=Physo133664.2;Parent=Physo133664;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 289577 289814 . - 0 ID=Physo133664;Parent=Physo133664;rank=1 scaffold_27 . repeat_region 293494 294206 . + . description=Sola3-2_PS scaffold_27 . exon 289577 289814 . - . ID=Physo133664.1;Parent=Physo133664;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 290221 292377 . - . ID=Physo133665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270077;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 290221 292377 . - . ID=Physo133665;Parent=Physo133665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 290221 292377 . - 0 ID=Physo133665;Parent=Physo133665;rank=1 scaffold_27 . exon 290221 292377 . - . ID=Physo133665.1;Parent=Physo133665;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 293078 297480 . + . ID=Physo133666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270078;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 293078 297480 . + . ID=Physo133666;Parent=Physo133666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 293078 293096 . + 0 ID=Physo133666;Parent=Physo133666;rank=1 scaffold_27 . exon 293078 293096 . + . ID=Physo133666.1;Parent=Physo133666;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 293329 294213 . + 0 ID=Physo133666;Parent=Physo133666;rank=2 scaffold_27 . exon 293329 294213 . + . ID=Physo133666.2;Parent=Physo133666;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 294239 294461 . + 0 ID=Physo133666;Parent=Physo133666;rank=3 scaffold_27 . exon 294239 294461 . + . ID=Physo133666.3;Parent=Physo133666;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . CDS 294588 294763 . + 0 ID=Physo133666;Parent=Physo133666;rank=4 scaffold_27 . exon 294588 294763 . + . ID=Physo133666.4;Parent=Physo133666;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 295127 297480 . + 0 ID=Physo133666;Parent=Physo133666;rank=5 scaffold_27 . exon 295127 297480 . + . ID=Physo133666.5;Parent=Physo133666;constitutive=1;ensembl_phase=1;rank=5 scaffold_27 ensembl protein_coding_gene 297526 311205 . - . ID=Physo133667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270079;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 297526 311205 . - . ID=Physo133667;Parent=Physo133667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 297526 311205 . - 0 ID=Physo133667;Parent=Physo133667;rank=1 scaffold_27 . exon 297526 311205 . - . ID=Physo133667.1;Parent=Physo133667;constitutive=1;rank=1 scaffold_27 . biological_region 312818 312819 0.999 - . logic_name=eponine scaffold_27 . repeat_region 314001 314042 . ? . description=trf scaffold_27 . biological_region 317958 317960 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 317603 318313 . - . ID=Physo108722;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_270007;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 317603 318313 . - . ID=Physo108722;Parent=Physo108722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 317603 318313 . - . ID=Physo108722.1;Parent=Physo108722;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 317715 318284 . - 0 ID=Physo108722;Parent=Physo108722;rank=1 scaffold_27 ensembl protein_coding_gene 297526 311205 . - . ID=Physo133667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270079;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 297526 311205 . - . ID=Physo133667;Parent=Physo133667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 297526 311205 . - 0 ID=Physo133667;Parent=Physo133667;rank=1 scaffold_27 . exon 297526 311205 . - . ID=Physo133667.1;Parent=Physo133667;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 314224 317075 . + . ID=Physo133668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270080;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 314224 317075 . + . ID=Physo133668;Parent=Physo133668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 314224 314337 . + 0 ID=Physo133668;Parent=Physo133668;rank=1 scaffold_27 . exon 314224 314337 . + . ID=Physo133668.1;Parent=Physo133668;constitutive=1;rank=1 scaffold_27 . CDS 314466 314548 . + 0 ID=Physo133668;Parent=Physo133668;rank=2 scaffold_27 . exon 314466 314548 . + . ID=Physo133668.2;Parent=Physo133668;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 314629 314719 . + 0 ID=Physo133668;Parent=Physo133668;rank=3 scaffold_27 . exon 314629 314719 . + . ID=Physo133668.3;Parent=Physo133668;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 314789 314898 . + 0 ID=Physo133668;Parent=Physo133668;rank=4 scaffold_27 . exon 314789 314898 . + . ID=Physo133668.4;Parent=Physo133668;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 314981 315023 . + 0 ID=Physo133668;Parent=Physo133668;rank=5 scaffold_27 . exon 314981 315023 . + . ID=Physo133668.5;Parent=Physo133668;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 315102 316469 . + 0 ID=Physo133668;Parent=Physo133668;rank=6 scaffold_27 . exon 315102 316469 . + . ID=Physo133668.6;Parent=Physo133668;constitutive=1;rank=6 scaffold_27 . CDS 316543 316757 . + 0 ID=Physo133668;Parent=Physo133668;rank=7 scaffold_27 . exon 316543 316757 . + . ID=Physo133668.7;Parent=Physo133668;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_27 . CDS 316837 316908 . + 0 ID=Physo133668;Parent=Physo133668;rank=8 scaffold_27 . exon 316837 316908 . + . ID=Physo133668.8;Parent=Physo133668;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_27 . CDS 316993 317068 . + 0 ID=Physo133668;Parent=Physo133668;rank=9 scaffold_27 . exon 316993 317075 . + . ID=Physo133668.9;Parent=Physo133668;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=9 scaffold_27 ensembl protein_coding_gene 318526 321213 . + . ID=Physo156807;biotype=protein_coding;external_name=C_scaffold_27000041;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 318526 321213 . + . ID=Physo156807;Parent=Physo156807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 318526 318562 . + 0 ID=Physo156807;Parent=Physo156807;rank=1 scaffold_27 . exon 318526 318562 . + . ID=Physo156807.1;Parent=Physo156807;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 318645 318809 . + 0 ID=Physo156807;Parent=Physo156807;rank=2 scaffold_27 . exon 318645 318809 . + . ID=Physo156807.2;Parent=Physo156807;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 318902 319003 . + 0 ID=Physo156807;Parent=Physo156807;rank=3 scaffold_27 . exon 318902 319003 . + . ID=Physo156807.3;Parent=Physo156807;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 319138 319495 . + 0 ID=Physo156807;Parent=Physo156807;rank=4 scaffold_27 . exon 319138 319495 . + . ID=Physo156807.4;Parent=Physo156807;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_27 . CDS 319648 320106 . + 0 ID=Physo156807;Parent=Physo156807;rank=5 scaffold_27 . CDS 320134 320351 . + 0 ID=Physo156807;Parent=Physo156807;rank=6 scaffold_27 . CDS 320397 320581 . + 0 ID=Physo156807;Parent=Physo156807;rank=7 scaffold_27 . CDS 320659 321213 . + 0 ID=Physo156807;Parent=Physo156807;rank=8 scaffold_27 . repeat_region 325555 325569 . ? . description=dust scaffold_27 ensembl protein_coding_gene 321364 324099 . + . ID=Physo133671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270083;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 321364 324099 . + . ID=Physo133671;Parent=Physo133671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 321364 324039 . + 0 ID=Physo133671;Parent=Physo133671;rank=1 scaffold_27 . exon 321364 324099 . + . ID=Physo133671.1;Parent=Physo133671;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 324186 324815 . - . ID=Physo133672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270084;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 324186 324815 . - . ID=Physo133672;Parent=Physo133672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 324186 324815 . - 0 ID=Physo133672;Parent=Physo133672;rank=1 scaffold_27 . exon 324186 324815 . - . ID=Physo133672.1;Parent=Physo133672;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 325843 327954 . + . ID=Physo133673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270085;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 325843 327954 . + . ID=Physo133673;Parent=Physo133673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 325843 327954 . + 0 ID=Physo133673;Parent=Physo133673;rank=1 scaffold_27 . exon 325843 327954 . + . ID=Physo133673.1;Parent=Physo133673;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 328007 330805 . - . ID=Physo133674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270086;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 328007 330805 . - . ID=Physo133674;Parent=Physo133674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 328007 329308 . - 0 ID=Physo133674;Parent=Physo133674;rank=6 scaffold_27 . exon 328007 329308 . - . ID=Physo133674.6;Parent=Physo133674;constitutive=1;rank=6 scaffold_27 . CDS 329380 329472 . - 0 ID=Physo133674;Parent=Physo133674;rank=5 scaffold_27 . CDS 329592 329891 . - 0 ID=Physo133674;Parent=Physo133674;rank=4 scaffold_27 . CDS 330210 330303 . - 0 ID=Physo133674;Parent=Physo133674;rank=3 scaffold_27 . CDS 330376 330404 . - 0 ID=Physo133674;Parent=Physo133674;rank=2 scaffold_27 . CDS 330485 330805 . - 0 ID=Physo133674;Parent=Physo133674;rank=1 scaffold_27 . exon 319648 320106 . + . ID=Physo156807.5;Parent=Physo156807;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_27 . exon 320134 320351 . + . ID=Physo156807.6;Parent=Physo156807;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_27 . exon 320397 320581 . + . ID=Physo156807.7;Parent=Physo156807;constitutive=1;ensembl_phase=1;rank=7 scaffold_27 . exon 320659 321213 . + . ID=Physo156807.8;Parent=Physo156807;constitutive=1;rank=8 scaffold_27 . repeat_region 331008 331032 . ? . description=trf scaffold_27 . repeat_region 333585 333798 . ? . description=trf scaffold_27 . biological_region 334353 334358 0.999 - . logic_name=eponine scaffold_27 . biological_region 335566 335569 0.999 + . logic_name=eponine scaffold_27 . exon 329380 329472 . - . ID=Physo133674.5;Parent=Physo133674;constitutive=1;rank=5 scaffold_27 . exon 329592 329891 . - . ID=Physo133674.4;Parent=Physo133674;constitutive=1;rank=4 scaffold_27 . exon 330210 330303 . - . ID=Physo133674.3;Parent=Physo133674;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . exon 330376 330404 . - . ID=Physo133674.2;Parent=Physo133674;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . exon 330485 330805 . - . ID=Physo133674.1;Parent=Physo133674;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 331354 332271 . - . ID=Physo133675;biotype=protein_coding;description=PsAvh194 [Source:UniProtKB/TrEMBL%3BAcc:E0W4X2];external_name=estExt_fgenesh1_pg.C_270087;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 331354 332271 . - . ID=Physo133675;Parent=Physo133675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 331354 332271 . - 0 ID=Physo133675;Parent=Physo133675;rank=1 scaffold_27 . exon 331354 332271 . - . ID=Physo133675.1;Parent=Physo133675;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 333125 333856 . - . ID=Physo133676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270088;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 333125 333856 . - . ID=Physo133676;Parent=Physo133676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 333125 333246 . - 0 ID=Physo133676;Parent=Physo133676;rank=3 scaffold_27 . exon 333125 333246 . - . ID=Physo133676.3;Parent=Physo133676;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 333333 333659 . - 0 ID=Physo133676;Parent=Physo133676;rank=2 scaffold_27 . exon 333333 333659 . - . ID=Physo133676.2;Parent=Physo133676;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 333703 333856 . - 0 ID=Physo133676;Parent=Physo133676;rank=1 scaffold_27 . exon 333703 333856 . - . ID=Physo133676.1;Parent=Physo133676;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 336147 336713 . - . ID=Physo133677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270089;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 336147 336713 . - . ID=Physo133677;Parent=Physo133677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 336147 336713 . - 0 ID=Physo133677;Parent=Physo133677;rank=1 scaffold_27 . exon 336147 336713 . - . ID=Physo133677.1;Parent=Physo133677;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 337532 341363 . - . ID=Physo133679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270091;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 337532 341363 . - . ID=Physo133679;Parent=Physo133679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 337532 337542 . - . ID=Physo133679.9;Parent=Physo133679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=9 scaffold_27 . exon 337632 337725 . - . ID=Physo133679.8;Parent=Physo133679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=8 scaffold_27 . exon 337819 337958 . - . ID=Physo133679.7;Parent=Physo133679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=7 scaffold_27 . exon 338037 338128 . - . ID=Physo133679.6;Parent=Physo133679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=6 scaffold_27 . exon 338207 338289 . - . ID=Physo133679.5;Parent=Physo133679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_27 . exon 338359 338440 . - . ID=Physo133679.4;Parent=Physo133679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_27 . exon 338513 338621 . - . ID=Physo133679.3;Parent=Physo133679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_27 . exon 338738 338795 . - . ID=Physo133679.2;Parent=Physo133679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_27 . exon 339183 341363 . - . ID=Physo133679.1;Parent=Physo133679;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 339200 341242 . - 0 ID=Physo133679;Parent=Physo133679;rank=1 scaffold_27 . repeat_region 340835 340861 . ? . description=dust scaffold_27 . repeat_region 341639 341653 . ? . description=dust scaffold_27 . repeat_region 343055 343062 . ? . description=dust scaffold_27 . repeat_region 343503 343563 . ? . description=dust scaffold_27 . repeat_region 345095 345107 . ? . description=dust scaffold_27 . repeat_region 347165 347172 . ? . description=dust scaffold_27 ensembl protein_coding_gene 343553 345392 . + . ID=Physo133680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270092;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 343553 345392 . + . ID=Physo133680;Parent=Physo133680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 343553 344133 . + . ID=Physo133680.1;Parent=Physo133680;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_27 . exon 344202 344564 . + . ID=Physo133680.2;Parent=Physo133680;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_27 . CDS 344305 344564 . + 0 ID=Physo133680;Parent=Physo133680;rank=1 scaffold_27 . CDS 344642 344772 . + 0 ID=Physo133680;Parent=Physo133680;rank=2 scaffold_27 . exon 344642 344772 . + . ID=Physo133680.3;Parent=Physo133680;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 344839 345044 . + 0 ID=Physo133680;Parent=Physo133680;rank=3 scaffold_27 . exon 344839 345044 . + . ID=Physo133680.4;Parent=Physo133680;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . CDS 345114 345218 . + 0 ID=Physo133680;Parent=Physo133680;rank=4 scaffold_27 . exon 345114 345392 . + . ID=Physo133680.5;Parent=Physo133680;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_27 ensembl protein_coding_gene 346430 346928 . + . ID=Physo133681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270093;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 346430 346928 . + . ID=Physo133681;Parent=Physo133681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 346430 346699 . + 0 ID=Physo133681;Parent=Physo133681;rank=1 scaffold_27 . exon 346430 346699 . + . ID=Physo133681.1;Parent=Physo133681;constitutive=1;rank=1 scaffold_27 . CDS 346780 346868 . + 0 ID=Physo133681;Parent=Physo133681;rank=2 scaffold_27 . exon 346780 346868 . + . ID=Physo133681.2;Parent=Physo133681;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 346910 346928 . + 0 ID=Physo133681;Parent=Physo133681;rank=3 scaffold_27 . exon 346910 346928 . + . ID=Physo133681.3;Parent=Physo133681;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 ensembl protein_coding_gene 348799 349436 . - . ID=Physo133682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270094;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 348799 349436 . - . ID=Physo133682;Parent=Physo133682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 348799 348809 . - 0 ID=Physo133682;Parent=Physo133682;rank=4 scaffold_27 . exon 348799 348809 . - . ID=Physo133682.4;Parent=Physo133682;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . CDS 348840 348908 . - 0 ID=Physo133682;Parent=Physo133682;rank=3 scaffold_27 . exon 348840 348908 . - . ID=Physo133682.3;Parent=Physo133682;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 348982 349136 . - 0 ID=Physo133682;Parent=Physo133682;rank=2 scaffold_27 . exon 348982 349136 . - . ID=Physo133682.2;Parent=Physo133682;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 349213 349436 . - 0 ID=Physo133682;Parent=Physo133682;rank=1 scaffold_27 . biological_region 352595 352598 0.999 + . logic_name=eponine scaffold_27 . biological_region 357408 357408 0.999 - . logic_name=eponine scaffold_27 . biological_region 358746 358746 0.999 + . logic_name=eponine scaffold_27 . exon 349213 349436 . - . ID=Physo133682.1;Parent=Physo133682;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 ensembl protein_coding_gene 349627 350819 . + . ID=Physo133683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270095;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 349627 350819 . + . ID=Physo133683;Parent=Physo133683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 349627 349773 . + 0 ID=Physo133683;Parent=Physo133683;rank=1 scaffold_27 . exon 349627 349773 . + . ID=Physo133683.1;Parent=Physo133683;constitutive=1;rank=1 scaffold_27 . CDS 349852 349987 . + 0 ID=Physo133683;Parent=Physo133683;rank=2 scaffold_27 . exon 349852 349987 . + . ID=Physo133683.2;Parent=Physo133683;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 350254 350819 . + 0 ID=Physo133683;Parent=Physo133683;rank=3 scaffold_27 . exon 350254 350819 . + . ID=Physo133683.3;Parent=Physo133683;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 ensembl protein_coding_gene 351366 351977 . - . ID=Physo133684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270096;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 351366 351977 . - . ID=Physo133684;Parent=Physo133684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 351366 351692 . - 0 ID=Physo133684;Parent=Physo133684;rank=3 scaffold_27 . exon 351366 351692 . - . ID=Physo133684.3;Parent=Physo133684;constitutive=1;rank=3 scaffold_27 . CDS 351737 351817 . - 0 ID=Physo133684;Parent=Physo133684;rank=2 scaffold_27 . exon 351737 351817 . - . ID=Physo133684.2;Parent=Physo133684;constitutive=1;rank=2 scaffold_27 . CDS 351899 351934 . - 0 ID=Physo133684;Parent=Physo133684;rank=1 scaffold_27 . exon 351899 351977 . - . ID=Physo133684.1;Parent=Physo133684;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 352568 354343 . + . ID=Physo133685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270097;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 352568 354343 . + . ID=Physo133685;Parent=Physo133685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 352568 352756 . + 0 ID=Physo133685;Parent=Physo133685;rank=1 scaffold_27 . exon 352568 352756 . + . ID=Physo133685.1;Parent=Physo133685;constitutive=1;rank=1 scaffold_27 . CDS 352848 353156 . + 0 ID=Physo133685;Parent=Physo133685;rank=2 scaffold_27 . exon 352848 353156 . + . ID=Physo133685.2;Parent=Physo133685;constitutive=1;rank=2 scaffold_27 . CDS 353224 353322 . + 0 ID=Physo133685;Parent=Physo133685;rank=3 scaffold_27 . exon 353224 353322 . + . ID=Physo133685.3;Parent=Physo133685;constitutive=1;rank=3 scaffold_27 . CDS 353400 353486 . + 0 ID=Physo133685;Parent=Physo133685;rank=4 scaffold_27 . exon 353400 353486 . + . ID=Physo133685.4;Parent=Physo133685;constitutive=1;rank=4 scaffold_27 . CDS 353571 353669 . + 0 ID=Physo133685;Parent=Physo133685;rank=5 scaffold_27 . exon 353571 353669 . + . ID=Physo133685.5;Parent=Physo133685;constitutive=1;rank=5 scaffold_27 . CDS 353754 353852 . + 0 ID=Physo133685;Parent=Physo133685;rank=6 scaffold_27 . exon 353754 353852 . + . ID=Physo133685.6;Parent=Physo133685;constitutive=1;rank=6 scaffold_27 . CDS 353918 354025 . + 0 ID=Physo133685;Parent=Physo133685;rank=7 scaffold_27 . exon 353918 354025 . + . ID=Physo133685.7;Parent=Physo133685;constitutive=1;rank=7 scaffold_27 . CDS 354115 354298 . + 0 ID=Physo133685;Parent=Physo133685;rank=8 scaffold_27 . exon 354115 354298 . + . ID=Physo133685.8;Parent=Physo133685;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_27 . CDS 354333 354343 . + 0 ID=Physo133685;Parent=Physo133685;rank=9 scaffold_27 . exon 354333 354343 . + . ID=Physo133685.9;Parent=Physo133685;constitutive=1;ensembl_phase=1;rank=9 scaffold_27 ensembl protein_coding_gene 355794 359964 . - . ID=Physo133686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270098;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 355794 359964 . - . ID=Physo133686;Parent=Physo133686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 355794 358829 . - 0 ID=Physo133686;Parent=Physo133686;rank=3 scaffold_27 . exon 355794 358829 . - . ID=Physo133686.3;Parent=Physo133686;constitutive=1;rank=3 scaffold_27 . CDS 358890 358963 . - 0 ID=Physo133686;Parent=Physo133686;rank=2 scaffold_27 . exon 358890 358963 . - . ID=Physo133686.2;Parent=Physo133686;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 359052 359964 . - 0 ID=Physo133686;Parent=Physo133686;rank=1 scaffold_27 . exon 359052 359964 . - . ID=Physo133686.1;Parent=Physo133686;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . repeat_region 367268 367422 . + . description=(CGA)n scaffold_27 . repeat_region 367357 367392 . ? . description=trf scaffold_27 ensembl protein_coding_gene 360261 361688 . - . ID=Physo133687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270099;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 360261 361688 . - . ID=Physo133687;Parent=Physo133687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 360261 361676 . - 0 ID=Physo133687;Parent=Physo133687;rank=1 scaffold_27 . exon 360261 361688 . - . ID=Physo133687.1;Parent=Physo133687;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 361861 362493 . + . ID=Physo133688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270100;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 361861 362493 . + . ID=Physo133688;Parent=Physo133688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 361861 362493 . + 0 ID=Physo133688;Parent=Physo133688;rank=1 scaffold_27 . exon 361861 362493 . + . ID=Physo133688.1;Parent=Physo133688;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 362667 364080 . + . ID=Physo133689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270101;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 362667 364080 . + . ID=Physo133689;Parent=Physo133689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 362667 364049 . + 0 ID=Physo133689;Parent=Physo133689;rank=1 scaffold_27 . exon 362667 364080 . + . ID=Physo133689.1;Parent=Physo133689;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 366014 368515 . + . ID=Physo133691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270103;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 366014 368515 . + . ID=Physo133691;Parent=Physo133691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 366014 368515 . + 0 ID=Physo133691;Parent=Physo133691;rank=1 scaffold_27 . exon 366014 368515 . + . ID=Physo133691.1;Parent=Physo133691;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 368705 371467 . - . ID=Physo133692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270104;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 368705 371467 . - . ID=Physo133692;Parent=Physo133692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 368705 369603 . - 0 ID=Physo133692;Parent=Physo133692;rank=2 scaffold_27 . exon 368705 369603 . - . ID=Physo133692.2;Parent=Physo133692;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 369949 371467 . - 0 ID=Physo133692;Parent=Physo133692;rank=1 scaffold_27 ensembl protein_coding_gene 364129 365823 . - . ID=Physo156815;biotype=protein_coding;external_name=C_scaffold_27000049;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 364129 365823 . - . ID=Physo156815;Parent=Physo156815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 364129 364226 . - 0 ID=Physo156815;Parent=Physo156815;rank=2 scaffold_27 . exon 364129 364226 . - . ID=Physo156815.2;Parent=Physo156815;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 364269 365823 . - 0 ID=Physo156815;Parent=Physo156815;rank=1 scaffold_27 . exon 364269 365823 . - . ID=Physo156815.1;Parent=Physo156815;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . biological_region 370629 370630 0.999 - . logic_name=eponine scaffold_27 . biological_region 370987 370991 0.999 + . logic_name=eponine scaffold_27 . biological_region 371008 371010 0.999 + . logic_name=eponine scaffold_27 . biological_region 371092 371094 0.999 + . logic_name=eponine scaffold_27 . biological_region 371123 371126 0.999 + . logic_name=eponine scaffold_27 . biological_region 371209 371215 0.999 - . logic_name=eponine scaffold_27 . biological_region 371229 371234 0.999 - . logic_name=eponine scaffold_27 . biological_region 371354 371359 0.999 - . logic_name=eponine scaffold_27 . biological_region 371563 371569 0.999 + . logic_name=eponine scaffold_27 . biological_region 372051 372052 0.999 + . logic_name=eponine scaffold_27 . biological_region 372733 372734 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 375559 382281 . + . ID=Physo115586;biotype=protein_coding;external_name=estExt_Genewise1.C_270029;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 375559 382281 . + . ID=Physo115586;Parent=Physo115586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 375559 375629 . + . ID=Physo115586.1;Parent=Physo115586;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_27 . CDS 375586 375629 . + 0 ID=Physo115586;Parent=Physo115586;rank=1 scaffold_27 . CDS 375701 375812 . + 0 ID=Physo115586;Parent=Physo115586;rank=2 scaffold_27 . exon 375701 375812 . + . ID=Physo115586.2;Parent=Physo115586;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 375879 375969 . + 0 ID=Physo115586;Parent=Physo115586;rank=3 scaffold_27 . exon 375879 375969 . + . ID=Physo115586.3;Parent=Physo115586;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 376035 376137 . + 0 ID=Physo115586;Parent=Physo115586;rank=4 scaffold_27 . exon 376035 376137 . + . ID=Physo115586.4;Parent=Physo115586;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_27 . CDS 376226 377554 . + 0 ID=Physo115586;Parent=Physo115586;rank=5 scaffold_27 . exon 376226 377554 . + . ID=Physo115586.5;Parent=Physo115586;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_27 . CDS 377643 377953 . + 0 ID=Physo115586;Parent=Physo115586;rank=6 scaffold_27 . exon 377643 377953 . + . ID=Physo115586.6;Parent=Physo115586;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_27 . CDS 378010 378266 . + 0 ID=Physo115586;Parent=Physo115586;rank=7 scaffold_27 . exon 378010 378266 . + . ID=Physo115586.7;Parent=Physo115586;constitutive=1;ensembl_phase=1;rank=7 scaffold_27 . CDS 378339 378521 . + 0 ID=Physo115586;Parent=Physo115586;rank=8 scaffold_27 . exon 378339 378521 . + . ID=Physo115586.8;Parent=Physo115586;constitutive=1;rank=8 scaffold_27 . CDS 378592 378767 . + 0 ID=Physo115586;Parent=Physo115586;rank=9 scaffold_27 . exon 378592 378767 . + . ID=Physo115586.9;Parent=Physo115586;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_27 . CDS 378846 379065 . + 0 ID=Physo115586;Parent=Physo115586;rank=10 scaffold_27 . exon 378846 379065 . + . ID=Physo115586.10;Parent=Physo115586;constitutive=1;ensembl_phase=2;rank=10 scaffold_27 . CDS 379140 379207 . + 0 ID=Physo115586;Parent=Physo115586;rank=11 scaffold_27 . CDS 379416 379737 . + 0 ID=Physo115586;Parent=Physo115586;rank=12 scaffold_27 . CDS 380008 382281 . + 0 ID=Physo115586;Parent=Physo115586;rank=13 scaffold_27 . exon 369949 371467 . - . ID=Physo133692.1;Parent=Physo133692;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 371992 372843 . + . ID=Physo133693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270105;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 371992 372843 . + . ID=Physo133693;Parent=Physo133693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 371992 372843 . + 0 ID=Physo133693;Parent=Physo133693;rank=1 scaffold_27 . exon 371992 372843 . + . ID=Physo133693.1;Parent=Physo133693;constitutive=1;rank=1 scaffold_27 . repeat_region 383032 383042 . ? . description=dust scaffold_27 . repeat_region 388308 388318 . ? . description=dust scaffold_27 . repeat_region 388812 388849 . ? . description=dust scaffold_27 ensembl protein_coding_gene 386811 387839 . + . ID=Physo108726;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_270011;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 386811 387839 . + . ID=Physo108726;Parent=Physo108726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 386811 386914 . + 0 ID=Physo108726;Parent=Physo108726;rank=1 scaffold_27 . exon 386811 386914 . + . ID=Physo108726.1;Parent=Physo108726;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 387002 387377 . + 0 ID=Physo108726;Parent=Physo108726;rank=2 scaffold_27 . exon 387002 387377 . + . ID=Physo108726.2;Parent=Physo108726;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 387459 387571 . + 0 ID=Physo108726;Parent=Physo108726;rank=3 scaffold_27 . exon 387459 387571 . + . ID=Physo108726.3;Parent=Physo108726;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_27 . CDS 387656 387839 . + 0 ID=Physo108726;Parent=Physo108726;rank=4 scaffold_27 . exon 387656 387839 . + . ID=Physo108726.4;Parent=Physo108726;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . exon 379140 379207 . + . ID=Physo115586.11;Parent=Physo115586;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_27 . exon 379416 379737 . + . ID=Physo115586.12;Parent=Physo115586;constitutive=1;ensembl_phase=2;rank=12 scaffold_27 . exon 380008 382281 . + . ID=Physo115586.13;Parent=Physo115586;constitutive=1;rank=13 scaffold_27 ensembl protein_coding_gene 383122 385203 . + . ID=Physo133696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270108;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 383122 385203 . + . ID=Physo133696;Parent=Physo133696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 383122 385203 . + 0 ID=Physo133696;Parent=Physo133696;rank=1 scaffold_27 . exon 383122 385203 . + . ID=Physo133696.1;Parent=Physo133696;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 388268 389158 . - . ID=Physo133698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270110;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 388268 389158 . - . ID=Physo133698;Parent=Physo133698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 388268 389158 . - . ID=Physo133698.1;Parent=Physo133698;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 388494 389027 . - 0 ID=Physo133698;Parent=Physo133698;rank=1 scaffold_27 . biological_region 389136 389141 0.999 - . logic_name=eponine scaffold_27 . biological_region 389192 389195 0.999 + . logic_name=eponine scaffold_27 . biological_region 389287 389293 0.999 - . logic_name=eponine scaffold_27 . biological_region 389342 389347 0.999 + . logic_name=eponine scaffold_27 . biological_region 389378 389383 0.999 + . logic_name=eponine scaffold_27 . biological_region 389405 389406 0.999 - . logic_name=eponine scaffold_27 . biological_region 389412 389420 0.999 - . logic_name=eponine scaffold_27 . biological_region 389441 389448 0.999 - . logic_name=eponine scaffold_27 . biological_region 389444 389448 0.999 + . logic_name=eponine scaffold_27 . biological_region 389467 389471 0.999 - . logic_name=eponine scaffold_27 . biological_region 389472 389475 0.999 + . logic_name=eponine scaffold_27 . biological_region 389523 389531 0.999 + . logic_name=eponine scaffold_27 . biological_region 389829 389832 0.999 - . logic_name=eponine scaffold_27 . biological_region 389833 389836 0.999 + . logic_name=eponine scaffold_27 . biological_region 389902 389909 0.999 + . logic_name=eponine scaffold_27 . biological_region 389903 389906 0.999 - . logic_name=eponine scaffold_27 . biological_region 389955 389960 0.999 - . logic_name=eponine scaffold_27 . biological_region 389979 389986 0.999 - . logic_name=eponine scaffold_27 . biological_region 390004 390010 0.999 - . logic_name=eponine scaffold_27 . biological_region 390154 390157 0.999 - . logic_name=eponine scaffold_27 . biological_region 390169 390177 0.999 + . logic_name=eponine scaffold_27 . biological_region 390742 390743 0.999 + . logic_name=eponine scaffold_27 . biological_region 390841 390847 0.999 - . logic_name=eponine scaffold_27 . biological_region 391960 391963 0.999 - . logic_name=eponine scaffold_27 . biological_region 393214 393215 0.999 - . logic_name=eponine scaffold_27 . repeat_region 393686 393721 . ? . description=trf scaffold_27 . biological_region 396659 396660 0.999 + . logic_name=eponine scaffold_27 . biological_region 396772 396777 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 392866 394102 . + . ID=Physo108727;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_270012;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 392866 394102 . + . ID=Physo108727;Parent=Physo108727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 392866 392988 . + . ID=Physo108727.1;Parent=Physo108727;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_27 . CDS 392936 392988 . + 0 ID=Physo108727;Parent=Physo108727;rank=1 scaffold_27 . CDS 393065 393293 . + 0 ID=Physo108727;Parent=Physo108727;rank=2 scaffold_27 . exon 393065 393293 . + . ID=Physo108727.2;Parent=Physo108727;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 393365 393484 . + 0 ID=Physo108727;Parent=Physo108727;rank=3 scaffold_27 . exon 393365 393484 . + . ID=Physo108727.3;Parent=Physo108727;constitutive=1;rank=3 scaffold_27 . CDS 393553 393603 . + 0 ID=Physo108727;Parent=Physo108727;rank=4 scaffold_27 . exon 393553 393603 . + . ID=Physo108727.4;Parent=Physo108727;constitutive=1;rank=4 scaffold_27 . CDS 393669 393772 . + 0 ID=Physo108727;Parent=Physo108727;rank=5 scaffold_27 . exon 393669 393772 . + . ID=Physo108727.5;Parent=Physo108727;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_27 . CDS 393861 393927 . + 0 ID=Physo108727;Parent=Physo108727;rank=6 scaffold_27 . exon 393861 394102 . + . ID=Physo108727.6;Parent=Physo108727;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_27 ensembl protein_coding_gene 390783 392834 . + . ID=Physo133699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270111;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 390783 392834 . + . ID=Physo133699;Parent=Physo133699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 390783 392729 . + 0 ID=Physo133699;Parent=Physo133699;rank=1 scaffold_27 . exon 390783 392834 . + . ID=Physo133699.1;Parent=Physo133699;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 394119 394871 . - . ID=Physo133701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270113;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 394119 394871 . - . ID=Physo133701;Parent=Physo133701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 394119 394561 . - 0 ID=Physo133701;Parent=Physo133701;rank=2 scaffold_27 . exon 394119 394561 . - . ID=Physo133701.2;Parent=Physo133701;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 394697 394871 . - 0 ID=Physo133701;Parent=Physo133701;rank=1 scaffold_27 . exon 394697 394871 . - . ID=Physo133701.1;Parent=Physo133701;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 394930 396862 . - . ID=Physo133702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270114;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 394930 396862 . - . ID=Physo133702;Parent=Physo133702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 394930 395176 . - . ID=Physo133702.7;Parent=Physo133702;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_27 . CDS 395026 395176 . - 0 ID=Physo133702;Parent=Physo133702;rank=7 scaffold_27 . CDS 395240 395401 . - 0 ID=Physo133702;Parent=Physo133702;rank=6 scaffold_27 . exon 395240 395401 . - . ID=Physo133702.6;Parent=Physo133702;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_27 . CDS 395459 395531 . - 0 ID=Physo133702;Parent=Physo133702;rank=5 scaffold_27 . exon 395459 395531 . - . ID=Physo133702.5;Parent=Physo133702;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_27 . CDS 395610 395709 . - 0 ID=Physo133702;Parent=Physo133702;rank=4 scaffold_27 . exon 395610 395709 . - . ID=Physo133702.4;Parent=Physo133702;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_27 . CDS 395791 395857 . - 0 ID=Physo133702;Parent=Physo133702;rank=3 scaffold_27 . exon 395791 395857 . - . ID=Physo133702.3;Parent=Physo133702;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 395935 396154 . - 0 ID=Physo133702;Parent=Physo133702;rank=2 scaffold_27 . exon 395935 396154 . - . ID=Physo133702.2;Parent=Physo133702;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 396220 396862 . - 0 ID=Physo133702;Parent=Physo133702;rank=1 scaffold_27 . exon 396220 396862 . - . ID=Physo133702.1;Parent=Physo133702;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 397595 399403 . + . ID=Physo133703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270115;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 397595 399403 . + . ID=Physo133703;Parent=Physo133703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 397595 397922 . + 0 ID=Physo133703;Parent=Physo133703;rank=1 scaffold_27 . exon 397595 397922 . + . ID=Physo133703.1;Parent=Physo133703;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 397993 398096 . + 0 ID=Physo133703;Parent=Physo133703;rank=2 scaffold_27 . exon 397993 398096 . + . ID=Physo133703.2;Parent=Physo133703;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 398165 398978 . + 0 ID=Physo133703;Parent=Physo133703;rank=3 scaffold_27 . exon 398165 398978 . + . ID=Physo133703.3;Parent=Physo133703;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 399043 399266 . + 0 ID=Physo133703;Parent=Physo133703;rank=4 scaffold_27 . exon 399043 399266 . + . ID=Physo133703.4;Parent=Physo133703;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . CDS 399332 399403 . + 0 ID=Physo133703;Parent=Physo133703;rank=5 scaffold_27 ensembl protein_coding_gene 401718 403449 . + . ID=Physo108728;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_270013;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 401718 403449 . + . ID=Physo108728;Parent=Physo108728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 401718 401771 . + 0 ID=Physo108728;Parent=Physo108728;rank=1 scaffold_27 . exon 401718 401771 . + . ID=Physo108728.1;Parent=Physo108728;constitutive=1;rank=1 scaffold_27 . CDS 401802 402082 . + 0 ID=Physo108728;Parent=Physo108728;rank=2 scaffold_27 . exon 401802 402082 . + . ID=Physo108728.2;Parent=Physo108728;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 402158 402240 . + 0 ID=Physo108728;Parent=Physo108728;rank=3 scaffold_27 . exon 402158 402240 . + . ID=Physo108728.3;Parent=Physo108728;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 402317 402426 . + 0 ID=Physo108728;Parent=Physo108728;rank=4 scaffold_27 . exon 402317 402426 . + . ID=Physo108728.4;Parent=Physo108728;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . CDS 402522 402731 . + 0 ID=Physo108728;Parent=Physo108728;rank=5 scaffold_27 . exon 402522 402731 . + . ID=Physo108728.5;Parent=Physo108728;constitutive=1;rank=5 scaffold_27 . CDS 402822 402968 . + 0 ID=Physo108728;Parent=Physo108728;rank=6 scaffold_27 . exon 402822 402968 . + . ID=Physo108728.6;Parent=Physo108728;constitutive=1;rank=6 scaffold_27 . CDS 403046 403129 . + 0 ID=Physo108728;Parent=Physo108728;rank=7 scaffold_27 . exon 403046 403129 . + . ID=Physo108728.7;Parent=Physo108728;constitutive=1;rank=7 scaffold_27 . CDS 403196 403334 . + 0 ID=Physo108728;Parent=Physo108728;rank=8 scaffold_27 . exon 403196 403334 . + . ID=Physo108728.8;Parent=Physo108728;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_27 . CDS 403408 403448 . + 0 ID=Physo108728;Parent=Physo108728;rank=9 scaffold_27 . exon 403408 403449 . + . ID=Physo108728.9;Parent=Physo108728;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=9 scaffold_27 . exon 399332 399403 . + . ID=Physo133703.5;Parent=Physo133703;constitutive=1;rank=5 scaffold_27 ensembl protein_coding_gene 399494 401517 . - . ID=Physo133704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270116;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 399494 401517 . - . ID=Physo133704;Parent=Physo133704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 399494 399609 . - 0 ID=Physo133704;Parent=Physo133704;rank=3 scaffold_27 . exon 399494 399609 . - . ID=Physo133704.3;Parent=Physo133704;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 399683 399812 . - 0 ID=Physo133704;Parent=Physo133704;rank=2 scaffold_27 . exon 399683 399812 . - . ID=Physo133704.2;Parent=Physo133704;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 399895 401517 . - 0 ID=Physo133704;Parent=Physo133704;rank=1 scaffold_27 . exon 399895 401517 . - . ID=Physo133704.1;Parent=Physo133704;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 403605 404681 . + . ID=Physo133706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270118;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 403605 404681 . + . ID=Physo133706;Parent=Physo133706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 403605 404010 . + 0 ID=Physo133706;Parent=Physo133706;rank=1 scaffold_27 . exon 403605 404010 . + . ID=Physo133706.1;Parent=Physo133706;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 404079 404318 . + 0 ID=Physo133706;Parent=Physo133706;rank=2 scaffold_27 . exon 404079 404318 . + . ID=Physo133706.2;Parent=Physo133706;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 404388 404545 . + 0 ID=Physo133706;Parent=Physo133706;rank=3 scaffold_27 . exon 404388 404681 . + . ID=Physo133706.3;Parent=Physo133706;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_27 ensembl protein_coding_gene 404706 405920 . - . ID=Physo133707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270119;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 404706 405920 . - . ID=Physo133707;Parent=Physo133707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 404706 404838 . - 0 ID=Physo133707;Parent=Physo133707;rank=4 scaffold_27 . exon 404706 404838 . - . ID=Physo133707.4;Parent=Physo133707;constitutive=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 404937 405129 . - 0 ID=Physo133707;Parent=Physo133707;rank=3 scaffold_27 . exon 404937 405129 . - . ID=Physo133707.3;Parent=Physo133707;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . CDS 405259 405583 . - 0 ID=Physo133707;Parent=Physo133707;rank=2 scaffold_27 . exon 405259 405583 . - . ID=Physo133707.2;Parent=Physo133707;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 405606 405920 . - 0 ID=Physo133707;Parent=Physo133707;rank=1 scaffold_27 . exon 405606 405920 . - . ID=Physo133707.1;Parent=Physo133707;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 406075 407576 . + . ID=Physo133708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270120;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 406075 407576 . + . ID=Physo133708;Parent=Physo133708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 406075 406638 . + 0 ID=Physo133708;Parent=Physo133708;rank=1 scaffold_27 . exon 406075 406638 . + . ID=Physo133708.1;Parent=Physo133708;constitutive=1;rank=1 scaffold_27 . CDS 406715 407059 . + 0 ID=Physo133708;Parent=Physo133708;rank=2 scaffold_27 . exon 406715 407059 . + . ID=Physo133708.2;Parent=Physo133708;constitutive=1;rank=2 scaffold_27 . CDS 407142 407576 . + 0 ID=Physo133708;Parent=Physo133708;rank=3 scaffold_27 . exon 407142 407576 . + . ID=Physo133708.3;Parent=Physo133708;constitutive=1;rank=3 scaffold_27 ensembl protein_coding_gene 407647 409199 . - . ID=Physo133709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270121;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 407647 409199 . - . ID=Physo133709;Parent=Physo133709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 407647 409048 . - 0 ID=Physo133709;Parent=Physo133709;rank=2 scaffold_27 . exon 407647 409048 . - . ID=Physo133709.2;Parent=Physo133709;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 409117 409199 . - 0 ID=Physo133709;Parent=Physo133709;rank=1 scaffold_27 . repeat_region 409659 409669 . ? . description=dust scaffold_27 . biological_region 418976 418978 0.999 + . logic_name=eponine scaffold_27 . exon 409117 409199 . - . ID=Physo133709.1;Parent=Physo133709;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 ensembl protein_coding_gene 410483 412843 . + . ID=Physo133710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270122;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 410483 412843 . + . ID=Physo133710;Parent=Physo133710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 410483 412843 . + 0 ID=Physo133710;Parent=Physo133710;rank=1 scaffold_27 . exon 410483 412843 . + . ID=Physo133710.1;Parent=Physo133710;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 413862 416309 . + . ID=Physo133711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270123;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 413862 416309 . + . ID=Physo133711;Parent=Physo133711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 413862 416309 . + 0 ID=Physo133711;Parent=Physo133711;rank=1 scaffold_27 . exon 413862 416309 . + . ID=Physo133711.1;Parent=Physo133711;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 417156 419654 . + . ID=Physo133712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270124;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 417156 419654 . + . ID=Physo133712;Parent=Physo133712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 417156 417240 . + 0 ID=Physo133712;Parent=Physo133712;rank=1 scaffold_27 . exon 417156 417240 . + . ID=Physo133712.1;Parent=Physo133712;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 417488 418124 . + 0 ID=Physo133712;Parent=Physo133712;rank=2 scaffold_27 . exon 417488 418124 . + . ID=Physo133712.2;Parent=Physo133712;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 418166 419288 . + 0 ID=Physo133712;Parent=Physo133712;rank=3 scaffold_27 . exon 418166 419288 . + . ID=Physo133712.3;Parent=Physo133712;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 419353 419436 . + 0 ID=Physo133712;Parent=Physo133712;rank=4 scaffold_27 . CDS 419484 419654 . + 0 ID=Physo133712;Parent=Physo133712;rank=5 scaffold_27 . exon 419353 419436 . + . ID=Physo133712.4;Parent=Physo133712;constitutive=1;rank=4 scaffold_27 . exon 419484 419654 . + . ID=Physo133712.5;Parent=Physo133712;constitutive=1;rank=5 scaffold_27 ensembl protein_coding_gene 420373 422763 . + . ID=Physo133713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270125;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 420373 422763 . + . ID=Physo133713;Parent=Physo133713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 420373 422763 . + 0 ID=Physo133713;Parent=Physo133713;rank=1 scaffold_27 . exon 420373 422763 . + . ID=Physo133713.1;Parent=Physo133713;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 427600 428942 . - . ID=Physo133714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270126;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 427600 428942 . - . ID=Physo133714;Parent=Physo133714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 427600 427941 . - 0 ID=Physo133714;Parent=Physo133714;rank=3 scaffold_27 . exon 427600 427941 . - . ID=Physo133714.3;Parent=Physo133714;constitutive=1;rank=3 scaffold_27 . CDS 428132 428363 . - 0 ID=Physo133714;Parent=Physo133714;rank=2 scaffold_27 . exon 428132 428363 . - . ID=Physo133714.2;Parent=Physo133714;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 428434 428942 . - 0 ID=Physo133714;Parent=Physo133714;rank=1 scaffold_27 . exon 428434 428942 . - . ID=Physo133714.1;Parent=Physo133714;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . biological_region 429106 429107 0.999 + . logic_name=eponine scaffold_27 . biological_region 429939 429941 0.999 - . logic_name=eponine scaffold_27 . repeat_region 431445 431489 . ? . description=dust scaffold_27 . repeat_region 431445 431489 . ? . description=trf scaffold_27 . repeat_region 431791 431831 . ? . description=trf scaffold_27 . repeat_region 431935 432003 . ? . description=trf scaffold_27 . biological_region 432789 432795 0.999 + . logic_name=eponine scaffold_27 . repeat_region 432801 432840 . ? . description=trf scaffold_27 . biological_region 432880 432883 0.999 - . logic_name=eponine scaffold_27 . biological_region 432923 432926 0.999 - . logic_name=eponine scaffold_27 . repeat_region 434858 434902 . ? . description=trf scaffold_27 . repeat_region 436114 436133 . ? . description=trf scaffold_27 . repeat_region 436170 436231 . ? . description=trf scaffold_27 ensembl protein_coding_gene 429520 430170 . + . ID=Physo133715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270127;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 429520 430170 . + . ID=Physo133715;Parent=Physo133715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 429520 429527 . + 0 ID=Physo133715;Parent=Physo133715;rank=1 scaffold_27 . exon 429520 429527 . + . ID=Physo133715.1;Parent=Physo133715;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 429839 429950 . + 0 ID=Physo133715;Parent=Physo133715;rank=2 scaffold_27 . exon 429839 429950 . + . ID=Physo133715.2;Parent=Physo133715;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 429970 430170 . + 0 ID=Physo133715;Parent=Physo133715;rank=3 scaffold_27 . exon 429970 430170 . + . ID=Physo133715.3;Parent=Physo133715;constitutive=1;rank=3 scaffold_27 ensembl protein_coding_gene 432536 435875 . + . ID=Physo133716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270128;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 432536 435875 . + . ID=Physo133716;Parent=Physo133716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 432536 432560 . + 0 ID=Physo133716;Parent=Physo133716;rank=1 scaffold_27 . exon 432536 432560 . + . ID=Physo133716.1;Parent=Physo133716;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 432735 433037 . + 0 ID=Physo133716;Parent=Physo133716;rank=2 scaffold_27 . exon 432735 433037 . + . ID=Physo133716.2;Parent=Physo133716;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 433143 434249 . + 0 ID=Physo133716;Parent=Physo133716;rank=3 scaffold_27 . exon 433143 434249 . + . ID=Physo133716.3;Parent=Physo133716;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 434331 435042 . + 0 ID=Physo133716;Parent=Physo133716;rank=4 scaffold_27 . exon 434331 435042 . + . ID=Physo133716.4;Parent=Physo133716;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_27 . CDS 435125 435311 . + 0 ID=Physo133716;Parent=Physo133716;rank=5 scaffold_27 . exon 435125 435311 . + . ID=Physo133716.5;Parent=Physo133716;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 435378 435875 . + 0 ID=Physo133716;Parent=Physo133716;rank=6 scaffold_27 . exon 435378 435875 . + . ID=Physo133716.6;Parent=Physo133716;constitutive=1;rank=6 scaffold_27 ensembl protein_coding_gene 437051 446272 . - . ID=Physo133717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270129;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 437051 446272 . - . ID=Physo133717;Parent=Physo133717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 437051 439186 . - 0 ID=Physo133717;Parent=Physo133717;rank=6 scaffold_27 . exon 437051 439186 . - . ID=Physo133717.6;Parent=Physo133717;constitutive=1;rank=6 scaffold_27 . CDS 439347 439493 . - 0 ID=Physo133717;Parent=Physo133717;rank=5 scaffold_27 . CDS 439892 441705 . - 0 ID=Physo133717;Parent=Physo133717;rank=4 scaffold_27 . CDS 442158 444225 . - 0 ID=Physo133717;Parent=Physo133717;rank=3 scaffold_27 . CDS 444602 444891 . - 0 ID=Physo133717;Parent=Physo133717;rank=2 scaffold_27 . CDS 445195 446272 . - 0 ID=Physo133717;Parent=Physo133717;rank=1 scaffold_27 . exon 439347 439493 . - . ID=Physo133717.5;Parent=Physo133717;constitutive=1;rank=5 scaffold_27 . exon 439892 441705 . - . ID=Physo133717.4;Parent=Physo133717;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . exon 442158 444225 . - . ID=Physo133717.3;Parent=Physo133717;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . exon 444602 444891 . - . ID=Physo133717.2;Parent=Physo133717;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . exon 445195 446272 . - . ID=Physo133717.1;Parent=Physo133717;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . repeat_region 450333 450340 . ? . description=dust scaffold_27 . biological_region 451037 451042 0.999 + . logic_name=eponine scaffold_27 . repeat_region 453214 453227 . ? . description=dust scaffold_27 . repeat_region 456748 456880 . + . description=Gypsy-1-I_PI-int scaffold_27 . repeat_region 457500 457509 . ? . description=dust scaffold_27 . repeat_region 457975 457985 . ? . description=dust scaffold_27 . repeat_region 471432 471442 . ? . description=dust scaffold_27 . repeat_region 471974 472522 . + . description=GypsyPi-1c_I-int scaffold_27 . biological_region 472696 472702 0.999 - . logic_name=eponine scaffold_27 . biological_region 473017 473018 0.999 - . logic_name=eponine scaffold_27 . biological_region 473061 473061 0.999 - . logic_name=eponine scaffold_27 . repeat_region 473122 476207 . + . description=GypsyPi-1c_I-int scaffold_27 . repeat_region 476112 476152 . ? . description=trf scaffold_27 . repeat_region 476557 476724 . + . description=GypsyPi-1c_I-int scaffold_27 . repeat_region 477203 477594 . ? . description=trf scaffold_27 . biological_region 477834 477843 0.999 + . logic_name=eponine scaffold_27 . biological_region 477969 477977 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 472732 475646 . + . ID=Physo133718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270130;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 472732 475646 . + . ID=Physo133718;Parent=Physo133718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 472732 473514 . + 0 ID=Physo133718;Parent=Physo133718;rank=1 scaffold_27 . exon 472732 473514 . + . ID=Physo133718.1;Parent=Physo133718;constitutive=1;rank=1 scaffold_27 . CDS 473566 473677 . + 0 ID=Physo133718;Parent=Physo133718;rank=2 scaffold_27 . exon 473566 473677 . + . ID=Physo133718.2;Parent=Physo133718;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 473799 475463 . + 0 ID=Physo133718;Parent=Physo133718;rank=3 scaffold_27 . exon 473799 475463 . + . ID=Physo133718.3;Parent=Physo133718;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 475621 475646 . + 0 ID=Physo133718;Parent=Physo133718;rank=4 scaffold_27 . exon 475621 475646 . + . ID=Physo133718.4;Parent=Physo133718;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 ensembl protein_coding_gene 476775 479743 . - . ID=Physo133719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270131;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 476775 479743 . - . ID=Physo133719;Parent=Physo133719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 476775 477333 . - 0 ID=Physo133719;Parent=Physo133719;rank=5 scaffold_27 . exon 476775 477333 . - . ID=Physo133719.5;Parent=Physo133719;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 477387 478226 . - 0 ID=Physo133719;Parent=Physo133719;rank=4 scaffold_27 . exon 477387 478226 . - . ID=Physo133719.4;Parent=Physo133719;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_27 . CDS 478874 479227 . - 0 ID=Physo133719;Parent=Physo133719;rank=3 scaffold_27 . exon 478874 479227 . - . ID=Physo133719.3;Parent=Physo133719;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_27 . CDS 479395 479644 . - 0 ID=Physo133719;Parent=Physo133719;rank=2 scaffold_27 . CDS 479698 479743 . - 0 ID=Physo133719;Parent=Physo133719;rank=1 scaffold_27 . exon 479395 479644 . - . ID=Physo133719.2;Parent=Physo133719;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . exon 479698 479743 . - . ID=Physo133719.1;Parent=Physo133719;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 483903 484721 . + . ID=Physo133720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270132;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 483903 484721 . + . ID=Physo133720;Parent=Physo133720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 483903 484721 . + 0 ID=Physo133720;Parent=Physo133720;rank=1 scaffold_27 . exon 483903 484721 . + . ID=Physo133720.1;Parent=Physo133720;constitutive=1;rank=1 scaffold_27 . repeat_region 488369 498015 . ? . description=dust scaffold_27 . biological_region 499548 499551 0.999 + . logic_name=eponine scaffold_27 . biological_region 503483 503486 0.999 - . logic_name=eponine scaffold_27 . biological_region 503539 503546 0.999 + . logic_name=eponine scaffold_27 . repeat_region 503679 503861 . ? . description=trf scaffold_27 . biological_region 503704 503705 0.999 - . logic_name=eponine scaffold_27 . repeat_region 503739 503788 . ? . description=trf scaffold_27 . repeat_region 503750 503915 . ? . description=trf scaffold_27 . biological_region 503808 503810 0.999 + . logic_name=eponine scaffold_27 . biological_region 503817 503822 0.999 - . logic_name=eponine scaffold_27 . biological_region 503836 503839 0.999 - . logic_name=eponine scaffold_27 . biological_region 504216 504216 0.999 + . logic_name=eponine scaffold_27 . biological_region 504688 504693 0.999 + . logic_name=eponine scaffold_27 . biological_region 504760 504762 0.999 + . logic_name=eponine scaffold_27 . biological_region 504787 504793 0.999 - . logic_name=eponine scaffold_27 . biological_region 507075 507077 0.999 - . logic_name=eponine scaffold_27 . biological_region 507148 507154 0.999 + . logic_name=eponine scaffold_27 . biological_region 507201 507207 0.999 - . logic_name=eponine scaffold_27 . biological_region 507328 507330 0.999 + . logic_name=eponine scaffold_27 ensembl protein_coding_gene 503562 504494 . - . ID=Physo133721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270133;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 503562 504494 . - . ID=Physo133721;Parent=Physo133721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 503562 504424 . - . ID=Physo133721.2;Parent=Physo133721;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_27 . CDS 503563 504424 . - 0 ID=Physo133721;Parent=Physo133721;rank=2 scaffold_27 . CDS 504484 504494 . - 0 ID=Physo133721;Parent=Physo133721;rank=1 scaffold_27 . exon 504484 504494 . - . ID=Physo133721.1;Parent=Physo133721;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 ensembl protein_coding_gene 508860 509495 . + . ID=Physo133722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270134;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 508860 509495 . + . ID=Physo133722;Parent=Physo133722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 508860 508880 . + 0 ID=Physo133722;Parent=Physo133722;rank=1 scaffold_27 . exon 508860 508880 . + . ID=Physo133722.1;Parent=Physo133722;constitutive=1;rank=1 scaffold_27 . CDS 509244 509495 . + 0 ID=Physo133722;Parent=Physo133722;rank=2 scaffold_27 . exon 509244 509495 . + . ID=Physo133722.2;Parent=Physo133722;constitutive=1;rank=2 scaffold_27 ensembl protein_coding_gene 510973 511965 . + . ID=Physo133723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270135;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 510973 511965 . + . ID=Physo133723;Parent=Physo133723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 510973 511455 . + . ID=Physo133723.1;Parent=Physo133723;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 511060 511455 . + 0 ID=Physo133723;Parent=Physo133723;rank=1 scaffold_27 . CDS 511530 511749 . + 0 ID=Physo133723;Parent=Physo133723;rank=2 scaffold_27 . exon 511530 511749 . + . ID=Physo133723.2;Parent=Physo133723;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 511820 511965 . + 0 ID=Physo133723;Parent=Physo133723;rank=3 scaffold_27 . exon 511820 511965 . + . ID=Physo133723.3;Parent=Physo133723;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 ensembl protein_coding_gene 513070 515826 . - . ID=Physo133724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270136;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 513070 515826 . - . ID=Physo133724;Parent=Physo133724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 513070 515826 . - . ID=Physo133724.1;Parent=Physo133724;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_27 . CDS 513211 515826 . - 0 ID=Physo133724;Parent=Physo133724;rank=1 scaffold_27 ensembl protein_coding_gene 515900 519254 . - . ID=Physo133725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270137;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 515900 519254 . - . ID=Physo133725;Parent=Physo133725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 515900 519254 . - . ID=Physo133725.1;Parent=Physo133725;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 515968 519210 . - 0 ID=Physo133725;Parent=Physo133725;rank=1 scaffold_27 . biological_region 519098 519101 0.999 - . logic_name=eponine scaffold_27 . biological_region 519134 519135 0.999 - . logic_name=eponine scaffold_27 . biological_region 519744 519745 0.999 + . logic_name=eponine scaffold_27 . biological_region 519814 519816 0.999 + . logic_name=eponine scaffold_27 . biological_region 519974 519976 0.999 - . logic_name=eponine scaffold_27 . biological_region 520347 520354 0.999 + . logic_name=eponine scaffold_27 . repeat_region 520934 520950 . ? . description=dust scaffold_27 . biological_region 521571 521574 0.999 - . logic_name=eponine scaffold_27 . biological_region 521610 521616 0.999 - . logic_name=eponine scaffold_27 . repeat_region 521642 521694 . ? . description=trf scaffold_27 . biological_region 521642 521645 0.999 - . logic_name=eponine scaffold_27 . biological_region 521650 521657 0.999 + . logic_name=eponine scaffold_27 . biological_region 521694 521701 0.999 + . logic_name=eponine scaffold_27 . biological_region 521715 521718 0.999 + . logic_name=eponine scaffold_27 . biological_region 521716 521718 0.999 - . logic_name=eponine scaffold_27 . biological_region 521733 521736 0.999 + . logic_name=eponine scaffold_27 . biological_region 521750 521754 0.999 - . logic_name=eponine scaffold_27 . biological_region 521865 521868 0.999 + . logic_name=eponine scaffold_27 . biological_region 524032 524035 0.999 - . logic_name=eponine scaffold_27 . biological_region 526253 526258 0.999 + . logic_name=eponine scaffold_27 . biological_region 526277 526279 0.999 + . logic_name=eponine scaffold_27 . biological_region 526300 526304 0.999 - . logic_name=eponine scaffold_27 . biological_region 526352 526357 0.999 + . logic_name=eponine scaffold_27 . biological_region 526360 526365 0.999 - . logic_name=eponine scaffold_27 . biological_region 527466 527470 0.999 + . logic_name=eponine scaffold_27 . repeat_region 527607 527645 . ? . description=trf scaffold_27 . repeat_region 527633 527667 . ? . description=dust scaffold_27 . repeat_region 527633 527667 . ? . description=trf scaffold_27 . repeat_region 527633 527667 . ? . description=trf scaffold_27 . biological_region 527781 527783 0.999 + . logic_name=eponine scaffold_27 . biological_region 528394 528394 0.999 + . logic_name=eponine scaffold_27 . biological_region 528462 528462 0.999 - . logic_name=eponine scaffold_27 . biological_region 528636 528636 0.999 - . logic_name=eponine scaffold_27 . biological_region 528673 528674 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 519406 520910 . - . ID=Physo133726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270138;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 519406 520910 . - . ID=Physo133726;Parent=Physo133726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 519406 520761 . - 0 ID=Physo133726;Parent=Physo133726;rank=2 scaffold_27 . exon 519406 520761 . - . ID=Physo133726.2;Parent=Physo133726;constitutive=1;rank=2 scaffold_27 . CDS 520857 520910 . - 0 ID=Physo133726;Parent=Physo133726;rank=1 scaffold_27 . exon 520857 520910 . - . ID=Physo133726.1;Parent=Physo133726;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 521238 523069 . + . ID=Physo133727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270139;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 521238 523069 . + . ID=Physo133727;Parent=Physo133727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 521238 521307 . + 0 ID=Physo133727;Parent=Physo133727;rank=1 scaffold_27 . exon 521238 521307 . + . ID=Physo133727.1;Parent=Physo133727;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 521415 523069 . + 0 ID=Physo133727;Parent=Physo133727;rank=2 scaffold_27 . exon 521415 523069 . + . ID=Physo133727.2;Parent=Physo133727;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 ensembl protein_coding_gene 523343 523956 . - . ID=Physo133728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270140;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 523343 523956 . - . ID=Physo133728;Parent=Physo133728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 523343 523358 . - 0 ID=Physo133728;Parent=Physo133728;rank=2 scaffold_27 . exon 523343 523358 . - . ID=Physo133728.2;Parent=Physo133728;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 523385 523956 . - 0 ID=Physo133728;Parent=Physo133728;rank=1 scaffold_27 . exon 523385 523956 . - . ID=Physo133728.1;Parent=Physo133728;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 ensembl protein_coding_gene 527593 528641 . - . ID=Physo133729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270141;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 527593 528641 . - . ID=Physo133729;Parent=Physo133729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 527593 528228 . - 0 ID=Physo133729;Parent=Physo133729;rank=2 scaffold_27 . exon 527593 528228 . - . ID=Physo133729.2;Parent=Physo133729;constitutive=1;rank=2 scaffold_27 . CDS 528306 528641 . - 0 ID=Physo133729;Parent=Physo133729;rank=1 scaffold_27 . exon 528306 528641 . - . ID=Physo133729.1;Parent=Physo133729;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 529098 531077 . - . ID=Physo133730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270142;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 529098 531077 . - . ID=Physo133730;Parent=Physo133730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 529098 530587 . - . ID=Physo133730.3;Parent=Physo133730;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_27 . CDS 529991 530587 . - 0 ID=Physo133730;Parent=Physo133730;rank=3 scaffold_27 . CDS 530660 530721 . - 0 ID=Physo133730;Parent=Physo133730;rank=2 scaffold_27 . exon 530660 530721 . - . ID=Physo133730.2;Parent=Physo133730;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 530804 531077 . - 0 ID=Physo133730;Parent=Physo133730;rank=1 scaffold_27 . exon 530804 531077 . - . ID=Physo133730.1;Parent=Physo133730;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 531207 532337 . + . ID=Physo133731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270143;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 531207 532337 . + . ID=Physo133731;Parent=Physo133731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 531207 532337 . + 0 ID=Physo133731;Parent=Physo133731;rank=1 scaffold_27 . exon 531207 532337 . + . ID=Physo133731.1;Parent=Physo133731;constitutive=1;rank=1 scaffold_27 . biological_region 539232 539234 0.999 + . logic_name=eponine scaffold_27 . repeat_region 539338 539386 . ? . description=trf scaffold_27 . biological_region 539776 539777 0.999 - . logic_name=eponine scaffold_27 . biological_region 539964 539965 0.999 - . logic_name=eponine scaffold_27 . repeat_region 541940 542030 . ? . description=trf scaffold_27 . biological_region 542937 542941 0.999 - . logic_name=eponine scaffold_27 . biological_region 545031 545032 0.999 - . logic_name=eponine scaffold_27 . biological_region 545071 545074 0.999 + . logic_name=eponine scaffold_27 . biological_region 545107 545107 0.999 + . logic_name=eponine scaffold_27 . biological_region 545582 545587 0.999 - . logic_name=eponine scaffold_27 . biological_region 546234 546238 0.999 - . logic_name=eponine scaffold_27 . repeat_region 548205 548253 . ? . description=trf scaffold_27 . biological_region 548643 548644 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 539156 540019 . + . ID=Physo133732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270144;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 539156 540019 . + . ID=Physo133732;Parent=Physo133732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 539156 540019 . + 0 ID=Physo133732;Parent=Physo133732;rank=1 scaffold_27 . exon 539156 540019 . + . ID=Physo133732.1;Parent=Physo133732;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 540820 541608 . + . ID=Physo133733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270145;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 540820 541608 . + . ID=Physo133733;Parent=Physo133733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 540820 541608 . + 0 ID=Physo133733;Parent=Physo133733;rank=1 scaffold_27 . exon 540820 541608 . + . ID=Physo133733.1;Parent=Physo133733;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 543112 545257 . + . ID=Physo133734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270146;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 543112 545257 . + . ID=Physo133734;Parent=Physo133734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 543112 545205 . + 0 ID=Physo133734;Parent=Physo133734;rank=1 scaffold_27 . exon 543112 545257 . + . ID=Physo133734.1;Parent=Physo133734;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 546091 546885 . + . ID=Physo133735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270147;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 546091 546885 . + . ID=Physo133735;Parent=Physo133735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 546091 546885 . + 0 ID=Physo133735;Parent=Physo133735;rank=1 scaffold_27 . exon 546091 546885 . + . ID=Physo133735.1;Parent=Physo133735;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 548020 549006 . + . ID=Physo133736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270148;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 548020 549006 . + . ID=Physo133736;Parent=Physo133736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 548020 549006 . + 0 ID=Physo133736;Parent=Physo133736;rank=1 scaffold_27 . exon 548020 549006 . + . ID=Physo133736.1;Parent=Physo133736;constitutive=1;rank=1 scaffold_27 . repeat_region 550372 550380 . ? . description=dust scaffold_27 . repeat_region 550509 550521 . ? . description=dust scaffold_27 . repeat_region 550779 550965 . ? . description=dust scaffold_27 . repeat_region 555221 555229 . ? . description=dust scaffold_27 ensembl protein_coding_gene 550583 553270 . + . ID=Physo133737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270149;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 550583 553270 . + . ID=Physo133737;Parent=Physo133737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 550583 550663 . + 0 ID=Physo133737;Parent=Physo133737;rank=1 scaffold_27 . exon 550583 550663 . + . ID=Physo133737.1;Parent=Physo133737;constitutive=1;rank=1 scaffold_27 . CDS 550734 551047 . + 0 ID=Physo133737;Parent=Physo133737;rank=2 scaffold_27 . exon 550734 551047 . + . ID=Physo133737.2;Parent=Physo133737;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 551089 551328 . + 0 ID=Physo133737;Parent=Physo133737;rank=3 scaffold_27 . exon 551089 551328 . + . ID=Physo133737.3;Parent=Physo133737;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_27 . CDS 551454 551632 . + 0 ID=Physo133737;Parent=Physo133737;rank=4 scaffold_27 . exon 551454 551632 . + . ID=Physo133737.4;Parent=Physo133737;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_27 . CDS 551691 551889 . + 0 ID=Physo133737;Parent=Physo133737;rank=5 scaffold_27 . exon 551691 551889 . + . ID=Physo133737.5;Parent=Physo133737;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_27 . CDS 551925 551935 . + 0 ID=Physo133737;Parent=Physo133737;rank=6 scaffold_27 . exon 551925 551935 . + . ID=Physo133737.6;Parent=Physo133737;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_27 . CDS 552128 552825 . + 0 ID=Physo133737;Parent=Physo133737;rank=7 scaffold_27 . exon 552128 552825 . + . ID=Physo133737.7;Parent=Physo133737;constitutive=1;ensembl_phase=1;rank=7 scaffold_27 . CDS 552888 552938 . + 0 ID=Physo133737;Parent=Physo133737;rank=8 scaffold_27 . exon 552888 552938 . + . ID=Physo133737.8;Parent=Physo133737;constitutive=1;rank=8 scaffold_27 . CDS 553061 553270 . + 0 ID=Physo133737;Parent=Physo133737;rank=9 scaffold_27 . exon 553061 553270 . + . ID=Physo133737.9;Parent=Physo133737;constitutive=1;rank=9 scaffold_27 ensembl protein_coding_gene 555762 556478 . + . ID=Physo133738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270150;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 555762 556478 . + . ID=Physo133738;Parent=Physo133738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 555762 556478 . + 0 ID=Physo133738;Parent=Physo133738;rank=1 scaffold_27 . exon 555762 556478 . + . ID=Physo133738.1;Parent=Physo133738;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 556750 557517 . - . ID=Physo133739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270151;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 556750 557517 . - . ID=Physo133739;Parent=Physo133739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 556750 557517 . - 0 ID=Physo133739;Parent=Physo133739;rank=1 scaffold_27 . exon 556750 557517 . - . ID=Physo133739.1;Parent=Physo133739;constitutive=1;rank=1 scaffold_27 . biological_region 559467 559474 0.999 - . logic_name=eponine scaffold_27 . repeat_region 561061 561095 . ? . description=trf scaffold_27 . biological_region 562440 562441 0.999 + . logic_name=eponine scaffold_27 . biological_region 562644 562646 0.999 + . logic_name=eponine scaffold_27 . biological_region 562827 562831 0.999 - . logic_name=eponine scaffold_27 . biological_region 563623 563625 0.999 - . logic_name=eponine scaffold_27 . biological_region 565242 565245 0.999 + . logic_name=eponine scaffold_27 . biological_region 565316 565317 0.999 - . logic_name=eponine scaffold_27 . biological_region 567567 567569 0.999 + . logic_name=eponine scaffold_27 . biological_region 567596 567599 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 559667 560415 . + . ID=Physo133740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270152;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 559667 560415 . + . ID=Physo133740;Parent=Physo133740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 559667 559927 . + 0 ID=Physo133740;Parent=Physo133740;rank=1 scaffold_27 . exon 559667 559927 . + . ID=Physo133740.1;Parent=Physo133740;constitutive=1;rank=1 scaffold_27 . CDS 560011 560415 . + 0 ID=Physo133740;Parent=Physo133740;rank=2 scaffold_27 . exon 560011 560415 . + . ID=Physo133740.2;Parent=Physo133740;constitutive=1;rank=2 scaffold_27 ensembl protein_coding_gene 560587 561327 . + . ID=Physo133741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270153;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 560587 561327 . + . ID=Physo133741;Parent=Physo133741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 560587 561327 . + 0 ID=Physo133741;Parent=Physo133741;rank=1 scaffold_27 . exon 560587 561327 . + . ID=Physo133741.1;Parent=Physo133741;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 562020 562834 . + . ID=Physo133742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270154;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 562020 562834 . + . ID=Physo133742;Parent=Physo133742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 562020 562834 . + . ID=Physo133742.1;Parent=Physo133742;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 562070 562834 . + 0 ID=Physo133742;Parent=Physo133742;rank=1 scaffold_27 ensembl protein_coding_gene 564825 567020 . + . ID=Physo133743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270155;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 564825 567020 . + . ID=Physo133743;Parent=Physo133743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 564825 565487 . + . ID=Physo133743.1;Parent=Physo133743;constitutive=1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 564918 565487 . + 0 ID=Physo133743;Parent=Physo133743;rank=1 scaffold_27 . CDS 565666 565878 . + 0 ID=Physo133743;Parent=Physo133743;rank=2 scaffold_27 . exon 565666 565878 . + . ID=Physo133743.2;Parent=Physo133743;constitutive=1;rank=2 scaffold_27 . CDS 566017 566766 . + 0 ID=Physo133743;Parent=Physo133743;rank=3 scaffold_27 . exon 566017 567020 . + . ID=Physo133743.3;Parent=Physo133743;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_27 ensembl protein_coding_gene 567061 567921 . + . ID=Physo133744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270156;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 567061 567921 . + . ID=Physo133744;Parent=Physo133744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 567061 567921 . + 0 ID=Physo133744;Parent=Physo133744;rank=1 scaffold_27 . exon 567061 567921 . + . ID=Physo133744.1;Parent=Physo133744;constitutive=1;rank=1 scaffold_27 . repeat_region 573652 573659 . ? . description=dust scaffold_27 ensembl protein_coding_gene 569118 570350 . + . ID=Physo133745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270157;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 569118 570350 . + . ID=Physo133745;Parent=Physo133745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 569118 569212 . + 0 ID=Physo133745;Parent=Physo133745;rank=1 scaffold_27 . exon 569118 569212 . + . ID=Physo133745.1;Parent=Physo133745;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . CDS 569292 569299 . + 0 ID=Physo133745;Parent=Physo133745;rank=2 scaffold_27 . exon 569292 569299 . + . ID=Physo133745.2;Parent=Physo133745;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 569395 570350 . + 0 ID=Physo133745;Parent=Physo133745;rank=3 scaffold_27 . exon 569395 570350 . + . ID=Physo133745.3;Parent=Physo133745;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 ensembl protein_coding_gene 571396 572349 . + . ID=Physo133746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270158;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 571396 572349 . + . ID=Physo133746;Parent=Physo133746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 571396 572349 . + 0 ID=Physo133746;Parent=Physo133746;rank=1 scaffold_27 . exon 571396 572349 . + . ID=Physo133746.1;Parent=Physo133746;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 575170 582202 . + . ID=Physo133747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270159;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 575170 582202 . + . ID=Physo133747;Parent=Physo133747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 575170 575205 . + 0 ID=Physo133747;Parent=Physo133747;rank=1 scaffold_27 . exon 575170 575205 . + . ID=Physo133747.1;Parent=Physo133747;constitutive=1;rank=1 scaffold_27 . CDS 575226 575363 . + 0 ID=Physo133747;Parent=Physo133747;rank=2 scaffold_27 . exon 575226 575363 . + . ID=Physo133747.2;Parent=Physo133747;constitutive=1;rank=2 scaffold_27 . CDS 575402 575789 . + 0 ID=Physo133747;Parent=Physo133747;rank=3 scaffold_27 . exon 575402 575789 . + . ID=Physo133747.3;Parent=Physo133747;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_27 . CDS 575828 576310 . + 0 ID=Physo133747;Parent=Physo133747;rank=4 scaffold_27 . exon 575828 576310 . + . ID=Physo133747.4;Parent=Physo133747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_27 . CDS 576640 577520 . + 0 ID=Physo133747;Parent=Physo133747;rank=5 scaffold_27 . exon 576640 577520 . + . ID=Physo133747.5;Parent=Physo133747;constitutive=1;ensembl_phase=1;rank=5 scaffold_27 . CDS 577551 578099 . + 0 ID=Physo133747;Parent=Physo133747;rank=6 scaffold_27 . exon 577551 578099 . + . ID=Physo133747.6;Parent=Physo133747;constitutive=1;rank=6 scaffold_27 . CDS 578409 578563 . + 0 ID=Physo133747;Parent=Physo133747;rank=7 scaffold_27 . exon 578409 578563 . + . ID=Physo133747.7;Parent=Physo133747;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_27 . CDS 578979 579651 . + 0 ID=Physo133747;Parent=Physo133747;rank=8 scaffold_27 . CDS 579908 579915 . + 0 ID=Physo133747;Parent=Physo133747;rank=9 scaffold_27 . CDS 580150 580530 . + 0 ID=Physo133747;Parent=Physo133747;rank=10 scaffold_27 . CDS 580596 581535 . + 0 ID=Physo133747;Parent=Physo133747;rank=11 scaffold_27 . CDS 581591 581848 . + 0 ID=Physo133747;Parent=Physo133747;rank=12 scaffold_27 . CDS 581876 582202 . + 0 ID=Physo133747;Parent=Physo133747;rank=13 scaffold_27 . repeat_region 580480 580509 . ? . description=trf scaffold_27 . biological_region 580522 580531 0.999 - . logic_name=eponine scaffold_27 . biological_region 580574 580578 0.999 - . logic_name=eponine scaffold_27 . biological_region 580659 580667 0.999 - . logic_name=eponine scaffold_27 . repeat_region 581546 581680 . - . description=GypsyPi-1c_I-int scaffold_27 . repeat_region 582183 582467 . - . description=GypsyPi-1c_I-int scaffold_27 . repeat_region 584144 584417 . - . description=GypsyPi-1c_I-int scaffold_27 . repeat_region 584684 587064 . - . description=GypsyPi-1c_I-int scaffold_27 . biological_region 586844 586844 0.999 - . logic_name=eponine scaffold_27 . biological_region 587598 587600 0.999 + . logic_name=eponine scaffold_27 . biological_region 587732 587733 0.999 - . logic_name=eponine scaffold_27 . biological_region 588188 588192 0.999 - . logic_name=eponine scaffold_27 . exon 578979 579651 . + . ID=Physo133747.8;Parent=Physo133747;constitutive=1;ensembl_phase=2;rank=8 scaffold_27 . exon 579908 579915 . + . ID=Physo133747.9;Parent=Physo133747;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_27 . exon 580150 580530 . + . ID=Physo133747.10;Parent=Physo133747;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_27 . exon 580596 581535 . + . ID=Physo133747.11;Parent=Physo133747;constitutive=1;ensembl_phase=2;rank=11 scaffold_27 . exon 581591 581848 . + . ID=Physo133747.12;Parent=Physo133747;constitutive=1;rank=12 scaffold_27 . exon 581876 582202 . + . ID=Physo133747.13;Parent=Physo133747;constitutive=1;rank=13 scaffold_27 ensembl protein_coding_gene 584375 587723 . - . ID=Physo133748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270160;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 584375 587723 . - . ID=Physo133748;Parent=Physo133748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 584375 584381 . - 0 ID=Physo133748;Parent=Physo133748;rank=6 scaffold_27 . exon 584375 584381 . - . ID=Physo133748.6;Parent=Physo133748;constitutive=1;ensembl_phase=2;rank=6 scaffold_27 . CDS 584422 585465 . - 0 ID=Physo133748;Parent=Physo133748;rank=5 scaffold_27 . exon 584422 585465 . - . ID=Physo133748.5;Parent=Physo133748;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_27 . CDS 585652 585962 . - 0 ID=Physo133748;Parent=Physo133748;rank=4 scaffold_27 . exon 585652 585962 . - . ID=Physo133748.4;Parent=Physo133748;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 586056 586488 . - 0 ID=Physo133748;Parent=Physo133748;rank=3 scaffold_27 . exon 586056 586488 . - . ID=Physo133748.3;Parent=Physo133748;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 586561 586832 . - 0 ID=Physo133748;Parent=Physo133748;rank=2 scaffold_27 . exon 586561 586832 . - . ID=Physo133748.2;Parent=Physo133748;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_27 . CDS 586884 587723 . - 0 ID=Physo133748;Parent=Physo133748;rank=1 scaffold_27 . exon 586884 587723 . - . ID=Physo133748.1;Parent=Physo133748;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 590220 594772 . - . ID=Physo133749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270161;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 590220 594772 . - . ID=Physo133749;Parent=Physo133749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 590220 590251 . - 0 ID=Physo133749;Parent=Physo133749;rank=6 scaffold_27 . exon 590220 590251 . - . ID=Physo133749.6;Parent=Physo133749;constitutive=1;ensembl_phase=1;rank=6 scaffold_27 . CDS 590380 590503 . - 0 ID=Physo133749;Parent=Physo133749;rank=5 scaffold_27 . exon 590380 590503 . - . ID=Physo133749.5;Parent=Physo133749;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_27 . CDS 590595 591587 . - 0 ID=Physo133749;Parent=Physo133749;rank=4 scaffold_27 . exon 590595 591587 . - . ID=Physo133749.4;Parent=Physo133749;constitutive=1;rank=4 scaffold_27 . CDS 591884 592802 . - 0 ID=Physo133749;Parent=Physo133749;rank=3 scaffold_27 . exon 591884 592802 . - . ID=Physo133749.3;Parent=Physo133749;constitutive=1;ensembl_phase=2;rank=3 scaffold_27 . CDS 593374 593512 . - 0 ID=Physo133749;Parent=Physo133749;rank=2 scaffold_27 . exon 593374 593512 . - . ID=Physo133749.2;Parent=Physo133749;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_27 . CDS 593800 594772 . - 0 ID=Physo133749;Parent=Physo133749;rank=1 scaffold_27 . exon 593800 594772 . - . ID=Physo133749.1;Parent=Physo133749;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 598347 599027 . - . ID=Physo133750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270162;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 598347 599027 . - . ID=Physo133750;Parent=Physo133750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 598347 599027 . - 0 ID=Physo133750;Parent=Physo133750;rank=1 scaffold_27 . exon 598347 599027 . - . ID=Physo133750.1;Parent=Physo133750;constitutive=1;rank=1 scaffold_27 . repeat_region 598618 598666 . ? . description=trf scaffold_27 . repeat_region 599094 599113 . ? . description=trf scaffold_27 . repeat_region 599544 599613 . ? . description=trf scaffold_27 . biological_region 603394 603397 0.999 - . logic_name=eponine scaffold_27 . biological_region 603449 603453 0.999 + . logic_name=eponine scaffold_27 . repeat_region 603687 603719 . ? . description=trf scaffold_27 . repeat_region 604144 604156 . ? . description=dust scaffold_27 . repeat_region 606931 606939 . ? . description=dust scaffold_27 . repeat_region 607715 607722 . ? . description=dust scaffold_27 . biological_region 608063 608070 0.999 - . logic_name=eponine scaffold_27 . biological_region 608429 608431 0.999 + . logic_name=eponine scaffold_27 . biological_region 608473 608475 0.999 + . logic_name=eponine scaffold_27 . biological_region 608482 608487 0.999 + . logic_name=eponine scaffold_27 . biological_region 608491 608492 0.999 + . logic_name=eponine scaffold_27 . biological_region 608493 608498 0.999 - . logic_name=eponine scaffold_27 . biological_region 608507 608513 0.999 + . logic_name=eponine scaffold_27 . repeat_region 608532 608551 . ? . description=trf scaffold_27 . biological_region 608550 608552 0.999 + . logic_name=eponine scaffold_27 . biological_region 608564 608567 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 599251 599826 . + . ID=Physo133751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270163;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 599251 599826 . + . ID=Physo133751;Parent=Physo133751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 599251 599826 . + 0 ID=Physo133751;Parent=Physo133751;rank=1 scaffold_27 . exon 599251 599826 . + . ID=Physo133751.1;Parent=Physo133751;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 601812 604677 . - . ID=Physo133752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270164;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 601812 604677 . - . ID=Physo133752;Parent=Physo133752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 601812 603682 . - . ID=Physo133752.4;Parent=Physo133752;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_27 . CDS 602014 603682 . - 0 ID=Physo133752;Parent=Physo133752;rank=4 scaffold_27 . CDS 603983 604028 . - 0 ID=Physo133752;Parent=Physo133752;rank=3 scaffold_27 . exon 603983 604028 . - . ID=Physo133752.3;Parent=Physo133752;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_27 . CDS 604265 604276 . - 0 ID=Physo133752;Parent=Physo133752;rank=2 scaffold_27 . exon 604265 604276 . - . ID=Physo133752.2;Parent=Physo133752;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 604320 604677 . - 0 ID=Physo133752;Parent=Physo133752;rank=1 scaffold_27 . exon 604320 604677 . - . ID=Physo133752.1;Parent=Physo133752;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 608387 609582 . + . ID=Physo133753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270165;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 608387 609582 . + . ID=Physo133753;Parent=Physo133753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 608387 608978 . + 0 ID=Physo133753;Parent=Physo133753;rank=1 scaffold_27 . exon 608387 608978 . + . ID=Physo133753.1;Parent=Physo133753;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . CDS 609035 609582 . + 0 ID=Physo133753;Parent=Physo133753;rank=2 scaffold_27 . exon 609035 609582 . + . ID=Physo133753.2;Parent=Physo133753;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 ensembl protein_coding_gene 615499 616662 . - . ID=Physo133754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270166;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 615499 616662 . - . ID=Physo133754;Parent=Physo133754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 615499 616494 . - 0 ID=Physo133754;Parent=Physo133754;rank=2 scaffold_27 . exon 615499 616494 . - . ID=Physo133754.2;Parent=Physo133754;constitutive=1;rank=2 scaffold_27 . CDS 616519 616662 . - 0 ID=Physo133754;Parent=Physo133754;rank=1 scaffold_27 . exon 616519 616662 . - . ID=Physo133754.1;Parent=Physo133754;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 616887 618279 . - . ID=Physo133755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270167;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 616887 618279 . - . ID=Physo133755;Parent=Physo133755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 616887 616907 . - 0 ID=Physo133755;Parent=Physo133755;rank=4 scaffold_27 . exon 616887 616907 . - . ID=Physo133755.4;Parent=Physo133755;constitutive=1;rank=4 scaffold_27 . CDS 617085 617098 . - 0 ID=Physo133755;Parent=Physo133755;rank=3 scaffold_27 . exon 617085 617098 . - . ID=Physo133755.3;Parent=Physo133755;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 617243 617285 . - 0 ID=Physo133755;Parent=Physo133755;rank=2 scaffold_27 . exon 617243 617285 . - . ID=Physo133755.2;Parent=Physo133755;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . CDS 617431 618279 . - 0 ID=Physo133755;Parent=Physo133755;rank=1 scaffold_27 . exon 617431 618279 . - . ID=Physo133755.1;Parent=Physo133755;constitutive=1;rank=1 scaffold_27 . biological_region 619611 619616 0.999 + . logic_name=eponine scaffold_27 . biological_region 619623 619626 0.999 - . logic_name=eponine scaffold_27 . biological_region 619642 619642 0.999 + . logic_name=eponine scaffold_27 . biological_region 619679 619682 0.999 - . logic_name=eponine scaffold_27 . biological_region 620046 620046 0.999 + . logic_name=eponine scaffold_27 . repeat_region 621850 621984 . ? . description=trf scaffold_27 . biological_region 623872 623879 0.999 + . logic_name=eponine scaffold_27 . biological_region 624054 624056 0.999 + . logic_name=eponine scaffold_27 . biological_region 624132 624135 0.999 + . logic_name=eponine scaffold_27 . biological_region 624156 624163 0.999 - . logic_name=eponine scaffold_27 . biological_region 624800 624801 0.999 + . logic_name=eponine scaffold_27 . repeat_region 624953 624962 . ? . description=dust scaffold_27 . repeat_region 625474 625482 . ? . description=dust scaffold_27 . repeat_region 625590 625603 . ? . description=dust scaffold_27 . biological_region 626856 626859 0.999 + . logic_name=eponine scaffold_27 . biological_region 626949 626949 0.999 - . logic_name=eponine scaffold_27 . biological_region 627069 627071 0.999 + . logic_name=eponine scaffold_27 . biological_region 627224 627225 0.999 - . logic_name=eponine scaffold_27 . biological_region 627342 627342 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 623364 624927 . - . ID=Physo108729;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_270014;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 623364 624927 . - . ID=Physo108729;Parent=Physo108729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 623364 624927 . - . ID=Physo108729.1;Parent=Physo108729;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_27 . CDS 623452 624927 . - 0 ID=Physo108729;Parent=Physo108729;rank=1 scaffold_27 ensembl protein_coding_gene 619512 620357 . + . ID=Physo133756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270168;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 619512 620357 . + . ID=Physo133756;Parent=Physo133756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 619512 620357 . + 0 ID=Physo133756;Parent=Physo133756;rank=1 scaffold_27 . exon 619512 620357 . + . ID=Physo133756.1;Parent=Physo133756;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 626759 627442 . - . ID=Physo133758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270170;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 626759 627442 . - . ID=Physo133758;Parent=Physo133758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 626759 627442 . - 0 ID=Physo133758;Parent=Physo133758;rank=1 scaffold_27 . exon 626759 627442 . - . ID=Physo133758.1;Parent=Physo133758;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 628623 629768 . + . ID=Physo133759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270171;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 628623 629768 . + . ID=Physo133759;Parent=Physo133759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 628623 629636 . + 0 ID=Physo133759;Parent=Physo133759;rank=1 scaffold_27 . exon 628623 629768 . + . ID=Physo133759.1;Parent=Physo133759;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_27 ensembl protein_coding_gene 629839 631753 . - . ID=Physo133760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270172;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 629839 631753 . - . ID=Physo133760;Parent=Physo133760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 629839 631753 . - . ID=Physo133760.1;Parent=Physo133760;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 630063 631586 . - 0 ID=Physo133760;Parent=Physo133760;rank=1 scaffold_27 . repeat_region 643436 643550 . ? . description=trf scaffold_27 . repeat_region 643436 643550 . ? . description=trf scaffold_27 . repeat_region 645365 645421 . ? . description=trf scaffold_27 . repeat_region 645368 645408 . ? . description=trf scaffold_27 . repeat_region 645392 645427 . ? . description=trf scaffold_27 . repeat_region 645980 645999 . ? . description=dust scaffold_27 ensembl protein_coding_gene 648313 649689 . + . ID=Physo133761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270173;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 648313 649689 . + . ID=Physo133761;Parent=Physo133761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 648313 648381 . + 0 ID=Physo133761;Parent=Physo133761;rank=1 scaffold_27 . exon 648313 648381 . + . ID=Physo133761.1;Parent=Physo133761;constitutive=1;rank=1 scaffold_27 . CDS 648468 649097 . + 0 ID=Physo133761;Parent=Physo133761;rank=2 scaffold_27 . exon 648468 649097 . + . ID=Physo133761.2;Parent=Physo133761;constitutive=1;rank=2 scaffold_27 . CDS 649123 649689 . + 0 ID=Physo133761;Parent=Physo133761;rank=3 scaffold_27 . biological_region 655624 655629 0.999 + . logic_name=eponine scaffold_27 . biological_region 655660 655665 0.999 + . logic_name=eponine scaffold_27 . biological_region 655683 655683 0.999 - . logic_name=eponine scaffold_27 . biological_region 655700 655705 0.999 - . logic_name=eponine scaffold_27 . biological_region 657583 657589 0.999 - . logic_name=eponine scaffold_27 . exon 649123 649689 . + . ID=Physo133761.3;Parent=Physo133761;constitutive=1;rank=3 scaffold_27 ensembl protein_coding_gene 654277 656139 . - . ID=Physo133762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270174;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 654277 656139 . - . ID=Physo133762;Parent=Physo133762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 654277 654531 . - 0 ID=Physo133762;Parent=Physo133762;rank=4 scaffold_27 . exon 654277 654531 . - . ID=Physo133762.4;Parent=Physo133762;constitutive=1;rank=4 scaffold_27 . CDS 654570 654902 . - 0 ID=Physo133762;Parent=Physo133762;rank=3 scaffold_27 . exon 654570 654902 . - . ID=Physo133762.3;Parent=Physo133762;constitutive=1;rank=3 scaffold_27 . CDS 655185 655423 . - 0 ID=Physo133762;Parent=Physo133762;rank=2 scaffold_27 . exon 655185 655423 . - . ID=Physo133762.2;Parent=Physo133762;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 655497 656139 . - 0 ID=Physo133762;Parent=Physo133762;rank=1 scaffold_27 . exon 655497 656139 . - . ID=Physo133762.1;Parent=Physo133762;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 657032 660025 . + . ID=Physo133763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270175;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 657032 660025 . + . ID=Physo133763;Parent=Physo133763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 657032 657049 . + 0 ID=Physo133763;Parent=Physo133763;rank=1 scaffold_27 . exon 657032 657049 . + . ID=Physo133763.1;Parent=Physo133763;constitutive=1;rank=1 scaffold_27 . CDS 657229 657579 . + 0 ID=Physo133763;Parent=Physo133763;rank=2 scaffold_27 . exon 657229 657579 . + . ID=Physo133763.2;Parent=Physo133763;constitutive=1;rank=2 scaffold_27 . CDS 657785 660025 . + 0 ID=Physo133763;Parent=Physo133763;rank=3 scaffold_27 . exon 657785 660025 . + . ID=Physo133763.3;Parent=Physo133763;constitutive=1;rank=3 scaffold_27 . repeat_region 659738 659781 . ? . description=trf scaffold_27 . repeat_region 659956 660022 . ? . description=trf scaffold_27 . repeat_region 666845 666894 . ? . description=dust scaffold_27 ensembl protein_coding_gene 660619 661572 . + . ID=Physo133764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270176;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 660619 661572 . + . ID=Physo133764;Parent=Physo133764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 660619 661572 . + 0 ID=Physo133764;Parent=Physo133764;rank=1 scaffold_27 . exon 660619 661572 . + . ID=Physo133764.1;Parent=Physo133764;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 662601 671117 . - . ID=Physo133765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270177;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 662601 671117 . - . ID=Physo133765;Parent=Physo133765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 662601 663073 . - 0 ID=Physo133765;Parent=Physo133765;rank=10 scaffold_27 . exon 662601 663073 . - . ID=Physo133765.10;Parent=Physo133765;constitutive=1;ensembl_phase=1;rank=10 scaffold_27 . CDS 663212 664306 . - 0 ID=Physo133765;Parent=Physo133765;rank=9 scaffold_27 . exon 663212 664306 . - . ID=Physo133765.9;Parent=Physo133765;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_27 . CDS 664423 665052 . - 0 ID=Physo133765;Parent=Physo133765;rank=8 scaffold_27 . exon 664423 665052 . - . ID=Physo133765.8;Parent=Physo133765;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_27 . CDS 665275 665539 . - 0 ID=Physo133765;Parent=Physo133765;rank=7 scaffold_27 . exon 665275 665539 . - . ID=Physo133765.7;Parent=Physo133765;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_27 . CDS 665683 666687 . - 0 ID=Physo133765;Parent=Physo133765;rank=6 scaffold_27 . exon 665683 666687 . - . ID=Physo133765.6;Parent=Physo133765;constitutive=1;rank=6 scaffold_27 . CDS 667509 667568 . - 0 ID=Physo133765;Parent=Physo133765;rank=5 scaffold_27 . exon 667509 667568 . - . ID=Physo133765.5;Parent=Physo133765;constitutive=1;rank=5 scaffold_27 . CDS 667846 669350 . - 0 ID=Physo133765;Parent=Physo133765;rank=4 scaffold_27 . exon 667846 669350 . - . ID=Physo133765.4;Parent=Physo133765;constitutive=1;ensembl_phase=1;rank=4 scaffold_27 . CDS 669453 669539 . - 0 ID=Physo133765;Parent=Physo133765;rank=3 scaffold_27 . CDS 669647 669662 . - 0 ID=Physo133765;Parent=Physo133765;rank=2 scaffold_27 . CDS 670056 671117 . - 0 ID=Physo133765;Parent=Physo133765;rank=1 scaffold_27 . biological_region 672333 672335 0.999 + . logic_name=eponine scaffold_27 . biological_region 672405 672407 0.999 - . logic_name=eponine scaffold_27 . biological_region 672480 672483 0.999 - . logic_name=eponine scaffold_27 . biological_region 672499 672505 0.999 - . logic_name=eponine scaffold_27 . biological_region 675269 675277 0.999 + . logic_name=eponine scaffold_27 . biological_region 675296 675298 0.999 - . logic_name=eponine scaffold_27 . exon 669453 669539 . - . ID=Physo133765.3;Parent=Physo133765;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_27 . exon 669647 669662 . - . ID=Physo133765.2;Parent=Physo133765;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_27 . exon 670056 671117 . - . ID=Physo133765.1;Parent=Physo133765;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 672340 674092 . - . ID=Physo133766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270178;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 672340 674092 . - . ID=Physo133766;Parent=Physo133766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 672340 672398 . - 0 ID=Physo133766;Parent=Physo133766;rank=3 scaffold_27 . exon 672340 672398 . - . ID=Physo133766.3;Parent=Physo133766;constitutive=1;ensembl_phase=1;rank=3 scaffold_27 . CDS 672448 673830 . - 0 ID=Physo133766;Parent=Physo133766;rank=2 scaffold_27 . exon 672448 673830 . - . ID=Physo133766.2;Parent=Physo133766;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 673933 674092 . - 0 ID=Physo133766;Parent=Physo133766;rank=1 scaffold_27 . exon 673933 674092 . - . ID=Physo133766.1;Parent=Physo133766;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 675137 676282 . - . ID=Physo133767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270179;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 675137 676282 . - . ID=Physo133767;Parent=Physo133767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 675137 675610 . - 0 ID=Physo133767;Parent=Physo133767;rank=3 scaffold_27 . exon 675137 675610 . - . ID=Physo133767.3;Parent=Physo133767;constitutive=1;rank=3 scaffold_27 . CDS 675670 676168 . - 0 ID=Physo133767;Parent=Physo133767;rank=2 scaffold_27 . exon 675670 676168 . - . ID=Physo133767.2;Parent=Physo133767;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 676224 676282 . - 0 ID=Physo133767;Parent=Physo133767;rank=1 scaffold_27 . exon 676224 676282 . - . ID=Physo133767.1;Parent=Physo133767;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . repeat_region 679150 679202 . ? . description=trf scaffold_27 . repeat_region 679446 679498 . ? . description=trf scaffold_27 . repeat_region 682406 682413 . ? . description=dust scaffold_27 . repeat_region 688026 688190 . ? . description=trf scaffold_27 ensembl protein_coding_gene 684033 687251 . + . ID=Physo133768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270180;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 684033 687251 . + . ID=Physo133768;Parent=Physo133768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 684033 684182 . + 0 ID=Physo133768;Parent=Physo133768;rank=1 scaffold_27 . exon 684033 684182 . + . ID=Physo133768.1;Parent=Physo133768;constitutive=1;rank=1 scaffold_27 . CDS 684404 685024 . + 0 ID=Physo133768;Parent=Physo133768;rank=2 scaffold_27 . exon 684404 685024 . + . ID=Physo133768.2;Parent=Physo133768;constitutive=1;rank=2 scaffold_27 . CDS 685202 685450 . + 0 ID=Physo133768;Parent=Physo133768;rank=3 scaffold_27 . exon 685202 685450 . + . ID=Physo133768.3;Parent=Physo133768;constitutive=1;rank=3 scaffold_27 . CDS 685858 685925 . + 0 ID=Physo133768;Parent=Physo133768;rank=4 scaffold_27 . exon 685858 685925 . + . ID=Physo133768.4;Parent=Physo133768;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 686000 686094 . + 0 ID=Physo133768;Parent=Physo133768;rank=5 scaffold_27 . exon 686000 686094 . + . ID=Physo133768.5;Parent=Physo133768;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 686122 686338 . + 0 ID=Physo133768;Parent=Physo133768;rank=6 scaffold_27 . exon 686122 686338 . + . ID=Physo133768.6;Parent=Physo133768;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_27 . CDS 686603 686909 . + 0 ID=Physo133768;Parent=Physo133768;rank=7 scaffold_27 . exon 686603 686909 . + . ID=Physo133768.7;Parent=Physo133768;constitutive=1;ensembl_phase=2;rank=7 scaffold_27 . CDS 687018 687084 . + 0 ID=Physo133768;Parent=Physo133768;rank=8 scaffold_27 . exon 687018 687084 . + . ID=Physo133768.8;Parent=Physo133768;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_27 . CDS 687172 687251 . + 0 ID=Physo133768;Parent=Physo133768;rank=9 scaffold_27 . exon 687172 687251 . + . ID=Physo133768.9;Parent=Physo133768;constitutive=1;ensembl_phase=1;rank=9 scaffold_27 . biological_region 689353 689357 0.999 - . logic_name=eponine scaffold_27 . biological_region 689408 689411 0.999 + . logic_name=eponine scaffold_27 . biological_region 689419 689426 0.999 - . logic_name=eponine scaffold_27 . biological_region 693923 693926 0.999 - . logic_name=eponine scaffold_27 . biological_region 694468 694470 0.999 - . logic_name=eponine scaffold_27 ensembl protein_coding_gene 692598 695034 . - . ID=Physo133769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270181;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 692598 695034 . - . ID=Physo133769;Parent=Physo133769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 692598 692626 . - 0 ID=Physo133769;Parent=Physo133769;rank=8 scaffold_27 . exon 692598 692626 . - . ID=Physo133769.8;Parent=Physo133769;constitutive=1;ensembl_phase=1;rank=8 scaffold_27 . CDS 692798 693059 . - 0 ID=Physo133769;Parent=Physo133769;rank=7 scaffold_27 . exon 692798 693059 . - . ID=Physo133769.7;Parent=Physo133769;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_27 . CDS 693226 693402 . - 0 ID=Physo133769;Parent=Physo133769;rank=6 scaffold_27 . exon 693226 693402 . - . ID=Physo133769.6;Parent=Physo133769;constitutive=1;rank=6 scaffold_27 . CDS 693435 693729 . - 0 ID=Physo133769;Parent=Physo133769;rank=5 scaffold_27 . exon 693435 693729 . - . ID=Physo133769.5;Parent=Physo133769;constitutive=1;ensembl_phase=2;rank=5 scaffold_27 . CDS 693892 694115 . - 0 ID=Physo133769;Parent=Physo133769;rank=4 scaffold_27 . exon 693892 694115 . - . ID=Physo133769.4;Parent=Physo133769;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_27 . CDS 694208 694531 . - 0 ID=Physo133769;Parent=Physo133769;rank=3 scaffold_27 . exon 694208 694531 . - . ID=Physo133769.3;Parent=Physo133769;constitutive=1;rank=3 scaffold_27 . CDS 694556 694568 . - 0 ID=Physo133769;Parent=Physo133769;rank=2 scaffold_27 . exon 694556 694568 . - . ID=Physo133769.2;Parent=Physo133769;constitutive=1;ensembl_phase=2;rank=2 scaffold_27 . CDS 694967 695034 . - 0 ID=Physo133769;Parent=Physo133769;rank=1 scaffold_27 . exon 694967 695034 . - . ID=Physo133769.1;Parent=Physo133769;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_27 . repeat_region 698754 698805 . ? . description=trf scaffold_27 . repeat_region 700491 700654 . ? . description=trf scaffold_27 . repeat_region 705098 705135 . ? . description=dust scaffold_27 . repeat_region 708099 708110 . ? . description=dust scaffold_27 ensembl protein_coding_gene 708263 711202 . + . ID=Physo133770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270182;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 708263 711202 . + . ID=Physo133770;Parent=Physo133770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 708263 711202 . + 0 ID=Physo133770;Parent=Physo133770;rank=1 scaffold_27 . exon 708263 711202 . + . ID=Physo133770.1;Parent=Physo133770;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 711465 714434 . + . ID=Physo133771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270183;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 711465 714434 . + . ID=Physo133771;Parent=Physo133771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 711465 714434 . + 0 ID=Physo133771;Parent=Physo133771;rank=1 scaffold_27 . exon 711465 714434 . + . ID=Physo133771.1;Parent=Physo133771;constitutive=1;rank=1 scaffold_27 . repeat_region 718543 718562 . ? . description=trf scaffold_27 . repeat_region 723986 723999 . ? . description=dust scaffold_27 . repeat_region 724053 724060 . ? . description=dust scaffold_27 . repeat_region 727048 727097 . ? . description=dust scaffold_27 ensembl protein_coding_gene 727944 730759 . - . ID=Physo133772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270184;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 727944 730759 . - . ID=Physo133772;Parent=Physo133772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 727944 729224 . - 0 ID=Physo133772;Parent=Physo133772;rank=2 scaffold_27 . exon 727944 729224 . - . ID=Physo133772.2;Parent=Physo133772;constitutive=1;rank=2 scaffold_27 . CDS 729269 730759 . - 0 ID=Physo133772;Parent=Physo133772;rank=1 scaffold_27 . biological_region 730092 730097 0.999 + . logic_name=eponine scaffold_27 . biological_region 730351 730352 0.999 - . logic_name=eponine scaffold_27 . biological_region 732316 732321 0.999 - . logic_name=eponine scaffold_27 . exon 729269 730759 . - . ID=Physo133772.1;Parent=Physo133772;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 735131 735553 . - . ID=Physo133773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270185;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 735131 735553 . - . ID=Physo133773;Parent=Physo133773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 735131 735553 . - 0 ID=Physo133773;Parent=Physo133773;rank=1 scaffold_27 . exon 735131 735553 . - . ID=Physo133773.1;Parent=Physo133773;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 736790 737864 . - . ID=Physo133774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270186;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 736790 737864 . - . ID=Physo133774;Parent=Physo133774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 736790 737505 . - 0 ID=Physo133774;Parent=Physo133774;rank=2 scaffold_27 . exon 736790 737505 . - . ID=Physo133774.2;Parent=Physo133774;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 737582 737864 . - 0 ID=Physo133774;Parent=Physo133774;rank=1 scaffold_27 . exon 737582 737864 . - . ID=Physo133774.1;Parent=Physo133774;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 ensembl protein_coding_gene 743627 744126 . - . ID=Physo133775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270187;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 743627 744126 . - . ID=Physo133775;Parent=Physo133775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 743627 743910 . - 0 ID=Physo133775;Parent=Physo133775;rank=2 scaffold_27 . exon 743627 743910 . - . ID=Physo133775.2;Parent=Physo133775;constitutive=1;ensembl_phase=1;rank=2 scaffold_27 . CDS 744006 744126 . - 0 ID=Physo133775;Parent=Physo133775;rank=1 scaffold_27 . exon 744006 744126 . - . ID=Physo133775.1;Parent=Physo133775;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_27 . biological_region 753307 753311 0.999 - . logic_name=eponine scaffold_27 . biological_region 756654 756656 0.999 - . logic_name=eponine scaffold_27 . repeat_region 757781 757788 . ? . description=dust scaffold_27 ensembl protein_coding_gene 749900 750289 . + . ID=Physo133776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270188;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 749900 750289 . + . ID=Physo133776;Parent=Physo133776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 749900 750289 . + 0 ID=Physo133776;Parent=Physo133776;rank=1 scaffold_27 . exon 749900 750289 . + . ID=Physo133776.1;Parent=Physo133776;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 765160 766234 . + . ID=Physo108730;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_270015;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 765160 766234 . + . ID=Physo108730;Parent=Physo108730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . exon 765160 766234 . + . ID=Physo108730.1;Parent=Physo108730;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_27 . CDS 765162 766184 . + 0 ID=Physo108730;Parent=Physo108730;rank=1 scaffold_27 ensembl protein_coding_gene 759868 761547 . + . ID=Physo133777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270189;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 759868 761547 . + . ID=Physo133777;Parent=Physo133777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 759868 761547 . + 0 ID=Physo133777;Parent=Physo133777;rank=1 scaffold_27 . exon 759868 761547 . + . ID=Physo133777.1;Parent=Physo133777;constitutive=1;rank=1 scaffold_27 ensembl protein_coding_gene 763165 764716 . + . ID=Physo133778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_270190;logic_name=jgi_physo1_1 scaffold_27 ensembl transcript 763165 764716 . + . ID=Physo133778;Parent=Physo133778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_27 . CDS 763165 764661 . + 0 ID=Physo133778;Parent=Physo133778;rank=1 scaffold_27 . exon 763165 764716 . + . ID=Physo133778.1;Parent=Physo133778;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_26 1 786871 scaffold_26 . repeat_region 218 242 . ? . description=trf scaffold_26 . biological_region 629 631 0.999 + . logic_name=eponine scaffold_26 . repeat_region 1240 1247 . ? . description=dust scaffold_26 . repeat_region 5454 5461 . ? . description=dust scaffold_26 . biological_region 5977 5979 0.999 + . logic_name=eponine scaffold_26 . biological_region 6006 6010 0.999 - . logic_name=eponine scaffold_26 . biological_region 8388 8390 0.999 + . logic_name=eponine scaffold_26 . biological_region 9817 9820 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 8318 9436 . - . ID=Physo115505;biotype=protein_coding;external_name=estExt_Genewise1.C_260146;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 8318 9436 . - . ID=Physo115505;Parent=Physo115505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 8318 8890 . - 0 ID=Physo115505;Parent=Physo115505;rank=2 scaffold_26 . exon 8318 8890 . - . ID=Physo115505.2;Parent=Physo115505;constitutive=1;rank=2 scaffold_26 . CDS 9397 9399 . - 0 ID=Physo115505;Parent=Physo115505;rank=1 scaffold_26 . exon 9397 9436 . - . ID=Physo115505.1;Parent=Physo115505;constitutive=1;ensembl_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 433 1879 . + . ID=Physo133395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260001;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 433 1879 . + . ID=Physo133395;Parent=Physo133395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 433 1187 . + 0 ID=Physo133395;Parent=Physo133395;rank=1 scaffold_26 . exon 433 1187 . + . ID=Physo133395.1;Parent=Physo133395;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 1265 1844 . + 0 ID=Physo133395;Parent=Physo133395;rank=2 scaffold_26 . exon 1265 1879 . + . ID=Physo133395.2;Parent=Physo133395;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_26 ensembl protein_coding_gene 5728 7899 . + . ID=Physo133396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260002;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 5728 7899 . + . ID=Physo133396;Parent=Physo133396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 5728 6541 . + 0 ID=Physo133396;Parent=Physo133396;rank=1 scaffold_26 . exon 5728 6541 . + . ID=Physo133396.1;Parent=Physo133396;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 6631 6738 . + 0 ID=Physo133396;Parent=Physo133396;rank=2 scaffold_26 . exon 6631 6738 . + . ID=Physo133396.2;Parent=Physo133396;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 6820 6910 . + 0 ID=Physo133396;Parent=Physo133396;rank=3 scaffold_26 . exon 6820 6910 . + . ID=Physo133396.3;Parent=Physo133396;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_26 . CDS 6988 7211 . + 0 ID=Physo133396;Parent=Physo133396;rank=4 scaffold_26 . exon 6988 7211 . + . ID=Physo133396.4;Parent=Physo133396;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 7282 7544 . + 0 ID=Physo133396;Parent=Physo133396;rank=5 scaffold_26 . exon 7282 7544 . + . ID=Physo133396.5;Parent=Physo133396;constitutive=1;ensembl_phase=1;rank=5 scaffold_26 . CDS 7631 7760 . + 0 ID=Physo133396;Parent=Physo133396;rank=6 scaffold_26 . exon 7631 7760 . + . ID=Physo133396.6;Parent=Physo133396;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_26 . CDS 7853 7899 . + 0 ID=Physo133396;Parent=Physo133396;rank=7 scaffold_26 . exon 7853 7899 . + . ID=Physo133396.7;Parent=Physo133396;constitutive=1;ensembl_phase=1;rank=7 scaffold_26 ensembl protein_coding_gene 9865 11619 . + . ID=Physo133398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260004;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 9865 11619 . + . ID=Physo133398;Parent=Physo133398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 9865 9893 . + 0 ID=Physo133398;Parent=Physo133398;rank=1 scaffold_26 . exon 9865 9893 . + . ID=Physo133398.1;Parent=Physo133398;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 9997 11371 . + 0 ID=Physo133398;Parent=Physo133398;rank=2 scaffold_26 . CDS 11437 11619 . + 0 ID=Physo133398;Parent=Physo133398;rank=3 scaffold_26 . exon 9997 11371 . + . ID=Physo133398.2;Parent=Physo133398;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . exon 11437 11619 . + . ID=Physo133398.3;Parent=Physo133398;constitutive=1;rank=3 scaffold_26 ensembl protein_coding_gene 14816 17459 . + . ID=Physo133400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260006;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 14816 17459 . + . ID=Physo133400;Parent=Physo133400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 14816 17459 . + . ID=Physo133400.1;Parent=Physo133400;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 14901 17342 . + 0 ID=Physo133400;Parent=Physo133400;rank=1 scaffold_26 ensembl protein_coding_gene 11918 14498 . - . ID=Physo156718;biotype=protein_coding;external_name=C_scaffold_26000002;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 11918 14498 . - . ID=Physo156718;Parent=Physo156718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 11918 11926 . - 0 ID=Physo156718;Parent=Physo156718;rank=5 scaffold_26 . exon 11918 11926 . - . ID=Physo156718.5;Parent=Physo156718;constitutive=1;rank=5 scaffold_26 . CDS 11988 12452 . - 0 ID=Physo156718;Parent=Physo156718;rank=4 scaffold_26 . exon 11988 12452 . - . ID=Physo156718.4;Parent=Physo156718;constitutive=1;rank=4 scaffold_26 . CDS 12492 13377 . - 0 ID=Physo156718;Parent=Physo156718;rank=3 scaffold_26 . exon 12492 13377 . - . ID=Physo156718.3;Parent=Physo156718;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 13510 13543 . - 0 ID=Physo156718;Parent=Physo156718;rank=2 scaffold_26 . exon 13510 13543 . - . ID=Physo156718.2;Parent=Physo156718;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 13976 14498 . - 0 ID=Physo156718;Parent=Physo156718;rank=1 scaffold_26 . exon 13976 14498 . - . ID=Physo156718.1;Parent=Physo156718;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 21131 28251 . + . ID=Physo156720;biotype=protein_coding;external_name=C_scaffold_26000004;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 21131 28251 . + . ID=Physo156720;Parent=Physo156720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 21131 21580 . + 0 ID=Physo156720;Parent=Physo156720;rank=1 scaffold_26 . exon 21131 21580 . + . ID=Physo156720.1;Parent=Physo156720;constitutive=1;rank=1 scaffold_26 . CDS 21659 22347 . + 0 ID=Physo156720;Parent=Physo156720;rank=2 scaffold_26 . exon 21659 22347 . + . ID=Physo156720.2;Parent=Physo156720;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 22672 22785 . + 0 ID=Physo156720;Parent=Physo156720;rank=3 scaffold_26 . exon 22672 22785 . + . ID=Physo156720.3;Parent=Physo156720;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_26 . CDS 22831 22996 . + 0 ID=Physo156720;Parent=Physo156720;rank=4 scaffold_26 . exon 22831 22996 . + . ID=Physo156720.4;Parent=Physo156720;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 23124 23143 . + 0 ID=Physo156720;Parent=Physo156720;rank=5 scaffold_26 . exon 23124 23143 . + . ID=Physo156720.5;Parent=Physo156720;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_26 . CDS 23515 23799 . + 0 ID=Physo156720;Parent=Physo156720;rank=6 scaffold_26 . exon 23515 23799 . + . ID=Physo156720.6;Parent=Physo156720;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_26 . CDS 23899 24571 . + 0 ID=Physo156720;Parent=Physo156720;rank=7 scaffold_26 . exon 23899 24571 . + . ID=Physo156720.7;Parent=Physo156720;constitutive=1;ensembl_phase=2;rank=7 scaffold_26 . CDS 24649 25482 . + 0 ID=Physo156720;Parent=Physo156720;rank=8 scaffold_26 . exon 24649 25482 . + . ID=Physo156720.8;Parent=Physo156720;constitutive=1;rank=8 scaffold_26 . CDS 25555 25728 . + 0 ID=Physo156720;Parent=Physo156720;rank=9 scaffold_26 . exon 25555 25728 . + . ID=Physo156720.9;Parent=Physo156720;constitutive=1;rank=9 scaffold_26 . CDS 26154 26623 . + 0 ID=Physo156720;Parent=Physo156720;rank=10 scaffold_26 . exon 26154 26623 . + . ID=Physo156720.10;Parent=Physo156720;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_26 . CDS 26651 26886 . + 0 ID=Physo156720;Parent=Physo156720;rank=11 scaffold_26 . exon 26651 26886 . + . ID=Physo156720.11;Parent=Physo156720;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_26 . CDS 26938 27283 . + 0 ID=Physo156720;Parent=Physo156720;rank=12 scaffold_26 . exon 26938 27283 . + . ID=Physo156720.12;Parent=Physo156720;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_26 . CDS 27344 27808 . + 0 ID=Physo156720;Parent=Physo156720;rank=13 scaffold_26 . exon 27344 27808 . + . ID=Physo156720.13;Parent=Physo156720;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_26 . CDS 27917 28027 . + 0 ID=Physo156720;Parent=Physo156720;rank=14 scaffold_26 . exon 27917 28027 . + . ID=Physo156720.14;Parent=Physo156720;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=14 scaffold_26 . CDS 28182 28251 . + 0 ID=Physo156720;Parent=Physo156720;rank=15 scaffold_26 . exon 28182 28251 . + . ID=Physo156720.15;Parent=Physo156720;constitutive=1;ensembl_phase=2;rank=15 scaffold_26 . repeat_region 33460 33499 . ? . description=dust scaffold_26 . repeat_region 33479 33499 . ? . description=trf scaffold_26 . biological_region 33858 33865 0.999 - . logic_name=eponine scaffold_26 . biological_region 33883 33888 0.999 - . logic_name=eponine scaffold_26 . biological_region 33938 33943 0.999 + . logic_name=eponine scaffold_26 . biological_region 33962 33965 0.999 + . logic_name=eponine scaffold_26 . biological_region 34082 34084 0.999 + . logic_name=eponine scaffold_26 . repeat_region 35715 35746 . ? . description=trf scaffold_26 . biological_region 39395 39398 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 36463 37295 . + . ID=Physo133403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260009;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 36463 37295 . + . ID=Physo133403;Parent=Physo133403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 36463 36961 . + 0 ID=Physo133403;Parent=Physo133403;rank=1 scaffold_26 . exon 36463 36961 . + . ID=Physo133403.1;Parent=Physo133403;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 37288 37295 . + 0 ID=Physo133403;Parent=Physo133403;rank=2 scaffold_26 . exon 37288 37295 . + . ID=Physo133403.2;Parent=Physo133403;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 39302 42826 . + . ID=Physo133404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260010;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 39302 42826 . + . ID=Physo133404;Parent=Physo133404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 39302 42396 . + 0 ID=Physo133404;Parent=Physo133404;rank=1 scaffold_26 . exon 39302 42396 . + . ID=Physo133404.1;Parent=Physo133404;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 42475 42553 . + 0 ID=Physo133404;Parent=Physo133404;rank=2 scaffold_26 . CDS 42636 42731 . + 0 ID=Physo133404;Parent=Physo133404;rank=3 scaffold_26 ensembl protein_coding_gene 30002 34219 . - . ID=Physo156721;biotype=protein_coding;external_name=C_scaffold_26000005;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 30002 34219 . - . ID=Physo156721;Parent=Physo156721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 30002 30095 . - 0 ID=Physo156721;Parent=Physo156721;rank=19 scaffold_26 . exon 30002 30095 . - . ID=Physo156721.19;Parent=Physo156721;constitutive=1;ensembl_phase=2;rank=19 scaffold_26 . CDS 30166 30326 . - 0 ID=Physo156721;Parent=Physo156721;rank=18 scaffold_26 . exon 30166 30326 . - . ID=Physo156721.18;Parent=Physo156721;constitutive=1;ensembl_end_phase=2;rank=18 scaffold_26 . CDS 30400 30564 . - 0 ID=Physo156721;Parent=Physo156721;rank=17 scaffold_26 . exon 30400 30564 . - . ID=Physo156721.17;Parent=Physo156721;constitutive=1;rank=17 scaffold_26 . CDS 30643 30750 . - 0 ID=Physo156721;Parent=Physo156721;rank=16 scaffold_26 . exon 30643 30750 . - . ID=Physo156721.16;Parent=Physo156721;constitutive=1;rank=16 scaffold_26 . CDS 30822 30923 . - 0 ID=Physo156721;Parent=Physo156721;rank=15 scaffold_26 . exon 30822 30923 . - . ID=Physo156721.15;Parent=Physo156721;constitutive=1;rank=15 scaffold_26 . CDS 30993 31177 . - 0 ID=Physo156721;Parent=Physo156721;rank=14 scaffold_26 . exon 30993 31177 . - . ID=Physo156721.14;Parent=Physo156721;constitutive=1;ensembl_phase=1;rank=14 scaffold_26 . CDS 31260 31311 . - 0 ID=Physo156721;Parent=Physo156721;rank=13 scaffold_26 . exon 31260 31311 . - . ID=Physo156721.13;Parent=Physo156721;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_26 . CDS 31441 31503 . - 0 ID=Physo156721;Parent=Physo156721;rank=12 scaffold_26 . exon 31441 31503 . - . ID=Physo156721.12;Parent=Physo156721;constitutive=1;rank=12 scaffold_26 . CDS 31590 31796 . - 0 ID=Physo156721;Parent=Physo156721;rank=11 scaffold_26 . exon 31590 31796 . - . ID=Physo156721.11;Parent=Physo156721;constitutive=1;rank=11 scaffold_26 . CDS 31863 31935 . - 0 ID=Physo156721;Parent=Physo156721;rank=10 scaffold_26 . exon 31863 31935 . - . ID=Physo156721.10;Parent=Physo156721;constitutive=1;ensembl_phase=2;rank=10 scaffold_26 . CDS 32023 32123 . - 0 ID=Physo156721;Parent=Physo156721;rank=9 scaffold_26 . exon 32023 32123 . - . ID=Physo156721.9;Parent=Physo156721;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_26 . CDS 32195 32363 . - 0 ID=Physo156721;Parent=Physo156721;rank=8 scaffold_26 . exon 32195 32363 . - . ID=Physo156721.8;Parent=Physo156721;constitutive=1;ensembl_phase=2;rank=8 scaffold_26 . CDS 32565 32635 . - 0 ID=Physo156721;Parent=Physo156721;rank=7 scaffold_26 . exon 32565 32635 . - . ID=Physo156721.7;Parent=Physo156721;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_26 . CDS 32712 32812 . - 0 ID=Physo156721;Parent=Physo156721;rank=6 scaffold_26 . exon 32712 32812 . - . ID=Physo156721.6;Parent=Physo156721;constitutive=1;ensembl_phase=1;rank=6 scaffold_26 . CDS 32891 33067 . - 0 ID=Physo156721;Parent=Physo156721;rank=5 scaffold_26 . exon 32891 33067 . - . ID=Physo156721.5;Parent=Physo156721;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_26 . CDS 33161 33241 . - 0 ID=Physo156721;Parent=Physo156721;rank=4 scaffold_26 . exon 33161 33241 . - . ID=Physo156721.4;Parent=Physo156721;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 33302 33474 . - 0 ID=Physo156721;Parent=Physo156721;rank=3 scaffold_26 . exon 33302 33474 . - . ID=Physo156721.3;Parent=Physo156721;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 33565 33701 . - 0 ID=Physo156721;Parent=Physo156721;rank=2 scaffold_26 . exon 33565 33701 . - . ID=Physo156721.2;Parent=Physo156721;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 33770 34219 . - 0 ID=Physo156721;Parent=Physo156721;rank=1 scaffold_26 . exon 33770 34219 . - . ID=Physo156721.1;Parent=Physo156721;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 45351 46968 . - . ID=Physo108701;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260002;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 45351 46968 . - . ID=Physo108701;Parent=Physo108701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 45351 46739 . - 0 ID=Physo108701;Parent=Physo108701;rank=1 scaffold_26 . exon 45351 46746 . - . ID=Physo108701.2;Parent=Physo108701;constitutive=1;ensembl_phase=-1;rank=2 scaffold_26 . exon 46916 46968 . - . ID=Physo108701.1;Parent=Physo108701;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_26 . exon 42475 42553 . + . ID=Physo133404.2;Parent=Physo133404;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . exon 42636 42826 . + . ID=Physo133404.3;Parent=Physo133404;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_26 ensembl protein_coding_gene 47124 51117 . + . ID=Physo133406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260012;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 47124 51117 . + . ID=Physo133406;Parent=Physo133406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 47124 47189 . + . ID=Physo133406.1;Parent=Physo133406;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_26 . CDS 47137 47189 . + 0 ID=Physo133406;Parent=Physo133406;rank=1 scaffold_26 . CDS 47262 48619 . + 0 ID=Physo133406;Parent=Physo133406;rank=2 scaffold_26 . exon 47262 48619 . + . ID=Physo133406.2;Parent=Physo133406;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 49145 51117 . + 0 ID=Physo133406;Parent=Physo133406;rank=3 scaffold_26 . exon 49145 51117 . + . ID=Physo133406.3;Parent=Physo133406;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . biological_region 52047 52051 0.999 - . logic_name=eponine scaffold_26 . biological_region 52309 52313 0.999 - . logic_name=eponine scaffold_26 . biological_region 52354 52358 0.999 - . logic_name=eponine scaffold_26 . biological_region 52409 52412 0.999 + . logic_name=eponine scaffold_26 . biological_region 52570 52571 0.999 - . logic_name=eponine scaffold_26 . biological_region 52574 52576 0.999 + . logic_name=eponine scaffold_26 . biological_region 52623 52626 0.999 + . logic_name=eponine scaffold_26 . biological_region 52677 52679 0.999 - . logic_name=eponine scaffold_26 . repeat_region 53180 53211 . ? . description=dust scaffold_26 . repeat_region 53184 53220 . ? . description=trf scaffold_26 . biological_region 53277 53277 0.999 + . logic_name=eponine scaffold_26 . biological_region 53298 53298 0.999 - . logic_name=eponine scaffold_26 . biological_region 53391 53396 0.999 - . logic_name=eponine scaffold_26 . biological_region 58189 58193 0.999 - . logic_name=eponine scaffold_26 . biological_region 58596 58597 0.999 - . logic_name=eponine scaffold_26 . biological_region 58733 58736 0.999 - . logic_name=eponine scaffold_26 . biological_region 58754 58757 0.999 - . logic_name=eponine scaffold_26 . biological_region 59464 59468 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 51855 54875 . + . ID=Physo133408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260014;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 51855 54875 . + . ID=Physo133408;Parent=Physo133408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 51855 52828 . + 0 ID=Physo133408;Parent=Physo133408;rank=1 scaffold_26 . exon 51855 52828 . + . ID=Physo133408.1;Parent=Physo133408;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 53036 54875 . + 0 ID=Physo133408;Parent=Physo133408;rank=2 scaffold_26 . exon 53036 54875 . + . ID=Physo133408.2;Parent=Physo133408;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 ensembl protein_coding_gene 57686 61007 . - . ID=Physo133410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260016;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 57686 61007 . - . ID=Physo133410;Parent=Physo133410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 57686 61007 . - . ID=Physo133410.1;Parent=Physo133410;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 57774 60953 . - 0 ID=Physo133410;Parent=Physo133410;rank=1 scaffold_26 ensembl protein_coding_gene 51280 51668 . - . ID=Physo156723;biotype=protein_coding;external_name=C_scaffold_26000007;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 51280 51668 . - . ID=Physo156723;Parent=Physo156723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 51280 51399 . - 0 ID=Physo156723;Parent=Physo156723;rank=2 scaffold_26 . exon 51280 51399 . - . ID=Physo156723.2;Parent=Physo156723;constitutive=1;rank=2 scaffold_26 . CDS 51471 51668 . - 0 ID=Physo156723;Parent=Physo156723;rank=1 scaffold_26 . exon 51471 51668 . - . ID=Physo156723.1;Parent=Physo156723;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 54965 57085 . - . ID=Physo156727;biotype=protein_coding;external_name=C_scaffold_26000011;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 54965 57085 . - . ID=Physo156727;Parent=Physo156727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 54965 55106 . - 0 ID=Physo156727;Parent=Physo156727;rank=6 scaffold_26 . exon 54965 55106 . - . ID=Physo156727.6;Parent=Physo156727;constitutive=1;ensembl_phase=2;rank=6 scaffold_26 . CDS 55428 55765 . - 0 ID=Physo156727;Parent=Physo156727;rank=5 scaffold_26 . exon 55428 55765 . - . ID=Physo156727.5;Parent=Physo156727;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_26 . CDS 55825 56265 . - 0 ID=Physo156727;Parent=Physo156727;rank=4 scaffold_26 . exon 55825 56265 . - . ID=Physo156727.4;Parent=Physo156727;constitutive=1;rank=4 scaffold_26 . CDS 56293 56625 . - 0 ID=Physo156727;Parent=Physo156727;rank=3 scaffold_26 . exon 56293 56625 . - . ID=Physo156727.3;Parent=Physo156727;constitutive=1;rank=3 scaffold_26 . CDS 56693 56854 . - 0 ID=Physo156727;Parent=Physo156727;rank=2 scaffold_26 . exon 56693 56854 . - . ID=Physo156727.2;Parent=Physo156727;constitutive=1;rank=2 scaffold_26 . CDS 57020 57085 . - 0 ID=Physo156727;Parent=Physo156727;rank=1 scaffold_26 . exon 57020 57085 . - . ID=Physo156727.1;Parent=Physo156727;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 61699 64505 . + . ID=Physo133411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260017;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 61699 64505 . + . ID=Physo133411;Parent=Physo133411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 61699 62335 . + 0 ID=Physo133411;Parent=Physo133411;rank=1 scaffold_26 . exon 61699 62335 . + . ID=Physo133411.1;Parent=Physo133411;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 62645 62698 . + 0 ID=Physo133411;Parent=Physo133411;rank=2 scaffold_26 . exon 62645 62698 . + . ID=Physo133411.2;Parent=Physo133411;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 62783 63342 . + 0 ID=Physo133411;Parent=Physo133411;rank=3 scaffold_26 . exon 62783 63342 . + . ID=Physo133411.3;Parent=Physo133411;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 63599 63685 . + 0 ID=Physo133411;Parent=Physo133411;rank=4 scaffold_26 . exon 63599 63685 . + . ID=Physo133411.4;Parent=Physo133411;constitutive=1;rank=4 scaffold_26 . CDS 63768 64505 . + 0 ID=Physo133411;Parent=Physo133411;rank=5 scaffold_26 . exon 63768 64505 . + . ID=Physo133411.5;Parent=Physo133411;constitutive=1;rank=5 scaffold_26 . biological_region 71074 71080 0.999 + . logic_name=eponine scaffold_26 . repeat_region 77299 77306 . ? . description=dust scaffold_26 . biological_region 77837 77842 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 70303 76815 . + . ID=Physo133412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260018;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 70303 76815 . + . ID=Physo133412;Parent=Physo133412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 70303 76569 . + 0 ID=Physo133412;Parent=Physo133412;rank=1 scaffold_26 . exon 70303 76569 . + . ID=Physo133412.1;Parent=Physo133412;constitutive=1;rank=1 scaffold_26 . CDS 76645 76704 . + 0 ID=Physo133412;Parent=Physo133412;rank=2 scaffold_26 . exon 76645 76815 . + . ID=Physo133412.2;Parent=Physo133412;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_26 ensembl protein_coding_gene 77596 79706 . + . ID=Physo133413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260019;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 77596 79706 . + . ID=Physo133413;Parent=Physo133413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 77596 77685 . + . ID=Physo133413.1;Parent=Physo133413;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 77628 77685 . + 0 ID=Physo133413;Parent=Physo133413;rank=1 scaffold_26 . CDS 77769 77800 . + 0 ID=Physo133413;Parent=Physo133413;rank=2 scaffold_26 . exon 77769 77800 . + . ID=Physo133413.2;Parent=Physo133413;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 77868 77958 . + 0 ID=Physo133413;Parent=Physo133413;rank=3 scaffold_26 . exon 77868 77958 . + . ID=Physo133413.3;Parent=Physo133413;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_26 . CDS 78048 78150 . + 0 ID=Physo133413;Parent=Physo133413;rank=4 scaffold_26 . exon 78048 78150 . + . ID=Physo133413.4;Parent=Physo133413;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_26 . CDS 78227 78380 . + 0 ID=Physo133413;Parent=Physo133413;rank=5 scaffold_26 . exon 78227 78380 . + . ID=Physo133413.5;Parent=Physo133413;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 78458 78523 . + 0 ID=Physo133413;Parent=Physo133413;rank=6 scaffold_26 . exon 78458 78523 . + . ID=Physo133413.6;Parent=Physo133413;constitutive=1;rank=6 scaffold_26 . CDS 78604 78705 . + 0 ID=Physo133413;Parent=Physo133413;rank=7 scaffold_26 . exon 78604 78705 . + . ID=Physo133413.7;Parent=Physo133413;constitutive=1;rank=7 scaffold_26 . CDS 78779 78886 . + 0 ID=Physo133413;Parent=Physo133413;rank=8 scaffold_26 . exon 78779 78886 . + . ID=Physo133413.8;Parent=Physo133413;constitutive=1;rank=8 scaffold_26 . CDS 78972 79039 . + 0 ID=Physo133413;Parent=Physo133413;rank=9 scaffold_26 . exon 78972 79039 . + . ID=Physo133413.9;Parent=Physo133413;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_26 . CDS 79125 79269 . + 0 ID=Physo133413;Parent=Physo133413;rank=10 scaffold_26 . exon 79125 79269 . + . ID=Physo133413.10;Parent=Physo133413;constitutive=1;ensembl_phase=2;rank=10 scaffold_26 . CDS 79336 79410 . + 0 ID=Physo133413;Parent=Physo133413;rank=11 scaffold_26 . exon 79336 79410 . + . ID=Physo133413.11;Parent=Physo133413;constitutive=1;rank=11 scaffold_26 . CDS 79488 79628 . + 0 ID=Physo133413;Parent=Physo133413;rank=12 scaffold_26 . exon 79488 79628 . + . ID=Physo133413.12;Parent=Physo133413;constitutive=1;rank=12 scaffold_26 . CDS 79701 79706 . + 0 ID=Physo133413;Parent=Physo133413;rank=13 scaffold_26 . repeat_region 79738 79782 . ? . description=trf scaffold_26 . repeat_region 80506 80530 . ? . description=trf scaffold_26 . repeat_region 81239 81281 . ? . description=trf scaffold_26 ensembl protein_coding_gene 87175 88146 . - . ID=Physo108702;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260003;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 87175 88146 . - . ID=Physo108702;Parent=Physo108702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 87175 88146 . - 0 ID=Physo108702;Parent=Physo108702;rank=1 scaffold_26 . exon 87175 88146 . - . ID=Physo108702.1;Parent=Physo108702;constitutive=1;rank=1 scaffold_26 . exon 79701 79706 . + . ID=Physo133413.13;Parent=Physo133413;constitutive=1;rank=13 scaffold_26 ensembl protein_coding_gene 81013 82620 . + . ID=Physo133414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260020;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 81013 82620 . + . ID=Physo133414;Parent=Physo133414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 81013 81457 . + 0 ID=Physo133414;Parent=Physo133414;rank=1 scaffold_26 . exon 81013 81457 . + . ID=Physo133414.1;Parent=Physo133414;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 81547 82553 . + 0 ID=Physo133414;Parent=Physo133414;rank=2 scaffold_26 . exon 81547 82620 . + . ID=Physo133414.2;Parent=Physo133414;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 85989 87011 . + . ID=Physo133416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260022;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 85989 87011 . + . ID=Physo133416;Parent=Physo133416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 85989 87011 . + 0 ID=Physo133416;Parent=Physo133416;rank=1 scaffold_26 . exon 85989 87011 . + . ID=Physo133416.1;Parent=Physo133416;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 82680 85821 . - . ID=Physo156735;biotype=protein_coding;external_name=C_scaffold_26000019;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 82680 85821 . - . ID=Physo156735;Parent=Physo156735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 82680 82769 . - 0 ID=Physo156735;Parent=Physo156735;rank=12 scaffold_26 . exon 82680 82769 . - . ID=Physo156735.12;Parent=Physo156735;constitutive=1;rank=12 scaffold_26 . CDS 82856 82973 . - 0 ID=Physo156735;Parent=Physo156735;rank=11 scaffold_26 . exon 82856 82973 . - . ID=Physo156735.11;Parent=Physo156735;constitutive=1;ensembl_phase=2;rank=11 scaffold_26 . CDS 83043 83291 . - 0 ID=Physo156735;Parent=Physo156735;rank=10 scaffold_26 . exon 83043 83291 . - . ID=Physo156735.10;Parent=Physo156735;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_26 . CDS 83334 83544 . - 0 ID=Physo156735;Parent=Physo156735;rank=9 scaffold_26 . exon 83334 83544 . - . ID=Physo156735.9;Parent=Physo156735;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_26 . CDS 83618 84111 . - 0 ID=Physo156735;Parent=Physo156735;rank=8 scaffold_26 . exon 83618 84111 . - . ID=Physo156735.8;Parent=Physo156735;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_26 . CDS 84334 84502 . - 0 ID=Physo156735;Parent=Physo156735;rank=7 scaffold_26 . exon 84334 84502 . - . ID=Physo156735.7;Parent=Physo156735;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_26 . CDS 84650 84743 . - 0 ID=Physo156735;Parent=Physo156735;rank=6 scaffold_26 . exon 84650 84743 . - . ID=Physo156735.6;Parent=Physo156735;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_26 . CDS 84812 84859 . - 0 ID=Physo156735;Parent=Physo156735;rank=5 scaffold_26 . exon 84812 84859 . - . ID=Physo156735.5;Parent=Physo156735;constitutive=1;rank=5 scaffold_26 . CDS 84956 85075 . - 0 ID=Physo156735;Parent=Physo156735;rank=4 scaffold_26 . exon 84956 85075 . - . ID=Physo156735.4;Parent=Physo156735;constitutive=1;rank=4 scaffold_26 . CDS 85124 85286 . - 0 ID=Physo156735;Parent=Physo156735;rank=3 scaffold_26 . exon 85124 85286 . - . ID=Physo156735.3;Parent=Physo156735;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 85367 85461 . - 0 ID=Physo156735;Parent=Physo156735;rank=2 scaffold_26 . exon 85367 85461 . - . ID=Physo156735.2;Parent=Physo156735;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 85540 85821 . - 0 ID=Physo156735;Parent=Physo156735;rank=1 scaffold_26 . exon 85540 85821 . - . ID=Physo156735.1;Parent=Physo156735;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 89829 91260 . - . ID=Physo133418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260024;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 89829 91260 . - . ID=Physo133418;Parent=Physo133418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 89829 89865 . - 0 ID=Physo133418;Parent=Physo133418;rank=2 scaffold_26 . exon 89829 89865 . - . ID=Physo133418.2;Parent=Physo133418;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 89921 91260 . - 0 ID=Physo133418;Parent=Physo133418;rank=1 scaffold_26 . exon 89921 91260 . - . ID=Physo133418.1;Parent=Physo133418;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 93357 94599 . - . ID=Physo133419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260025;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 93357 94599 . - . ID=Physo133419;Parent=Physo133419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 93357 93888 . - 0 ID=Physo133419;Parent=Physo133419;rank=3 scaffold_26 . exon 93357 93888 . - . ID=Physo133419.3;Parent=Physo133419;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 93967 94148 . - 0 ID=Physo133419;Parent=Physo133419;rank=2 scaffold_26 . exon 93967 94148 . - . ID=Physo133419.2;Parent=Physo133419;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 94219 94599 . - 0 ID=Physo133419;Parent=Physo133419;rank=1 scaffold_26 . exon 94219 94599 . - . ID=Physo133419.1;Parent=Physo133419;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 94758 96075 . + . ID=Physo133420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260026;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 94758 96075 . + . ID=Physo133420;Parent=Physo133420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 94758 94856 . + 0 ID=Physo133420;Parent=Physo133420;rank=1 scaffold_26 . exon 94758 94856 . + . ID=Physo133420.1;Parent=Physo133420;constitutive=1;rank=1 scaffold_26 . CDS 94937 95433 . + 0 ID=Physo133420;Parent=Physo133420;rank=2 scaffold_26 . exon 94937 95433 . + . ID=Physo133420.2;Parent=Physo133420;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 95531 95624 . + 0 ID=Physo133420;Parent=Physo133420;rank=3 scaffold_26 . exon 95531 95624 . + . ID=Physo133420.3;Parent=Physo133420;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 96055 96075 . + 0 ID=Physo133420;Parent=Physo133420;rank=4 scaffold_26 . exon 96055 96075 . + . ID=Physo133420.4;Parent=Physo133420;constitutive=1;rank=4 scaffold_26 . biological_region 102977 102982 0.999 - . logic_name=eponine scaffold_26 . biological_region 103096 103099 0.999 - . logic_name=eponine scaffold_26 . biological_region 103116 103120 0.999 - . logic_name=eponine scaffold_26 . repeat_region 104062 104069 . ? . description=dust scaffold_26 . biological_region 106366 106366 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 99688 100428 . + . ID=Physo133421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260027;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 99688 100428 . + . ID=Physo133421;Parent=Physo133421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 99688 100128 . + 0 ID=Physo133421;Parent=Physo133421;rank=1 scaffold_26 . exon 99688 100128 . + . ID=Physo133421.1;Parent=Physo133421;constitutive=1;rank=1 scaffold_26 . CDS 100195 100428 . + 0 ID=Physo133421;Parent=Physo133421;rank=2 scaffold_26 . exon 100195 100428 . + . ID=Physo133421.2;Parent=Physo133421;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 100631 105021 . - . ID=Physo133422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260028;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 100631 105021 . - . ID=Physo133422;Parent=Physo133422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 100631 101120 . - 0 ID=Physo133422;Parent=Physo133422;rank=9 scaffold_26 . exon 100631 101120 . - . ID=Physo133422.9;Parent=Physo133422;constitutive=1;ensembl_phase=2;rank=9 scaffold_26 . CDS 101203 101274 . - 0 ID=Physo133422;Parent=Physo133422;rank=8 scaffold_26 . exon 101203 101274 . - . ID=Physo133422.8;Parent=Physo133422;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_26 . CDS 101349 101474 . - 0 ID=Physo133422;Parent=Physo133422;rank=7 scaffold_26 . exon 101349 101474 . - . ID=Physo133422.7;Parent=Physo133422;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_26 . CDS 101549 101655 . - 0 ID=Physo133422;Parent=Physo133422;rank=6 scaffold_26 . exon 101549 101655 . - . ID=Physo133422.6;Parent=Physo133422;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_26 . CDS 101886 102045 . - 0 ID=Physo133422;Parent=Physo133422;rank=5 scaffold_26 . exon 101886 102045 . - . ID=Physo133422.5;Parent=Physo133422;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 102128 102238 . - 0 ID=Physo133422;Parent=Physo133422;rank=4 scaffold_26 . exon 102128 102238 . - . ID=Physo133422.4;Parent=Physo133422;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_26 . CDS 102314 102419 . - 0 ID=Physo133422;Parent=Physo133422;rank=3 scaffold_26 . exon 102314 102419 . - . ID=Physo133422.3;Parent=Physo133422;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_26 . CDS 102499 103333 . - 0 ID=Physo133422;Parent=Physo133422;rank=2 scaffold_26 . exon 102499 103333 . - . ID=Physo133422.2;Parent=Physo133422;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 103522 105021 . - 0 ID=Physo133422;Parent=Physo133422;rank=1 scaffold_26 . exon 103522 105021 . - . ID=Physo133422.1;Parent=Physo133422;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 105547 111411 . + . ID=Physo133423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260029;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 105547 111411 . + . ID=Physo133423;Parent=Physo133423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 105547 111411 . + 0 ID=Physo133423;Parent=Physo133423;rank=1 scaffold_26 . exon 105547 111411 . + . ID=Physo133423.1;Parent=Physo133423;constitutive=1;rank=1 scaffold_26 . repeat_region 118373 118401 . ? . description=trf scaffold_26 ensembl protein_coding_gene 111613 113613 . + . ID=Physo133424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260030;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 111613 113613 . + . ID=Physo133424;Parent=Physo133424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 111613 111627 . + . ID=Physo133424.1;Parent=Physo133424;constitutive=1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 111625 111627 . + 0 ID=Physo133424;Parent=Physo133424;rank=1 scaffold_26 . CDS 111787 111826 . + 0 ID=Physo133424;Parent=Physo133424;rank=2 scaffold_26 . exon 111787 111826 . + . ID=Physo133424.2;Parent=Physo133424;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 111905 111951 . + 0 ID=Physo133424;Parent=Physo133424;rank=3 scaffold_26 . exon 111905 111951 . + . ID=Physo133424.3;Parent=Physo133424;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 112023 113347 . + 0 ID=Physo133424;Parent=Physo133424;rank=4 scaffold_26 . exon 112023 113347 . + . ID=Physo133424.4;Parent=Physo133424;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_26 . CDS 113418 113613 . + 0 ID=Physo133424;Parent=Physo133424;rank=5 scaffold_26 . exon 113418 113613 . + . ID=Physo133424.5;Parent=Physo133424;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 ensembl protein_coding_gene 113800 119063 . - . ID=Physo133425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260031;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 113800 119063 . - . ID=Physo133425;Parent=Physo133425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 113800 114312 . - . ID=Physo133425.7;Parent=Physo133425;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_26 . CDS 113853 114312 . - 0 ID=Physo133425;Parent=Physo133425;rank=7 scaffold_26 . CDS 114570 115297 . - 0 ID=Physo133425;Parent=Physo133425;rank=6 scaffold_26 . exon 114570 115297 . - . ID=Physo133425.6;Parent=Physo133425;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_26 . CDS 115364 115510 . - 0 ID=Physo133425;Parent=Physo133425;rank=5 scaffold_26 . exon 115364 115510 . - . ID=Physo133425.5;Parent=Physo133425;constitutive=1;rank=5 scaffold_26 . CDS 115575 117297 . - 0 ID=Physo133425;Parent=Physo133425;rank=4 scaffold_26 . exon 115575 117297 . - . ID=Physo133425.4;Parent=Physo133425;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 117464 118201 . - 0 ID=Physo133425;Parent=Physo133425;rank=3 scaffold_26 . exon 117464 118201 . - . ID=Physo133425.3;Parent=Physo133425;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_26 . CDS 118288 118891 . - 0 ID=Physo133425;Parent=Physo133425;rank=2 scaffold_26 . exon 118288 118891 . - . ID=Physo133425.2;Parent=Physo133425;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 118976 119063 . - 0 ID=Physo133425;Parent=Physo133425;rank=1 scaffold_26 . exon 118976 119063 . - . ID=Physo133425.1;Parent=Physo133425;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 119385 121187 . + . ID=Physo133426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260032;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 119385 121187 . + . ID=Physo133426;Parent=Physo133426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 119385 121187 . + 0 ID=Physo133426;Parent=Physo133426;rank=1 scaffold_26 . exon 119385 121187 . + . ID=Physo133426.1;Parent=Physo133426;constitutive=1;rank=1 scaffold_26 . biological_region 120684 120685 0.999 + . logic_name=eponine scaffold_26 . biological_region 122755 122756 0.999 - . logic_name=eponine scaffold_26 . biological_region 123313 123316 0.999 + . logic_name=eponine scaffold_26 . biological_region 123370 123371 0.999 + . logic_name=eponine scaffold_26 . biological_region 123382 123392 0.999 - . logic_name=eponine scaffold_26 . repeat_region 123410 123417 . ? . description=dust scaffold_26 . biological_region 125952 125953 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 121334 122257 . - . ID=Physo133427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260033;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 121334 122257 . - . ID=Physo133427;Parent=Physo133427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 121334 121578 . - . ID=Physo133427.4;Parent=Physo133427;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_26 . CDS 121431 121578 . - 0 ID=Physo133427;Parent=Physo133427;rank=4 scaffold_26 . CDS 121654 121718 . - 0 ID=Physo133427;Parent=Physo133427;rank=3 scaffold_26 . exon 121654 121718 . - . ID=Physo133427.3;Parent=Physo133427;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 121787 121933 . - 0 ID=Physo133427;Parent=Physo133427;rank=2 scaffold_26 . exon 121787 121933 . - . ID=Physo133427.2;Parent=Physo133427;constitutive=1;rank=2 scaffold_26 . CDS 122027 122239 . - 0 ID=Physo133427;Parent=Physo133427;rank=1 scaffold_26 . exon 122027 122257 . - . ID=Physo133427.1;Parent=Physo133427;constitutive=1;ensembl_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 124237 125940 . + . ID=Physo133428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260034;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 124237 125940 . + . ID=Physo133428;Parent=Physo133428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 124237 125940 . + 0 ID=Physo133428;Parent=Physo133428;rank=1 scaffold_26 . exon 124237 125940 . + . ID=Physo133428.1;Parent=Physo133428;constitutive=1;rank=1 scaffold_26 . repeat_region 129758 129862 . ? . description=trf scaffold_26 . repeat_region 131703 131763 . ? . description=trf scaffold_26 . repeat_region 135085 135153 . ? . description=trf scaffold_26 ensembl protein_coding_gene 136367 137693 . + . ID=Physo133429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260035;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 136367 137693 . + . ID=Physo133429;Parent=Physo133429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 136367 137047 . + 0 ID=Physo133429;Parent=Physo133429;rank=1 scaffold_26 . exon 136367 137047 . + . ID=Physo133429.1;Parent=Physo133429;constitutive=1;rank=1 scaffold_26 . CDS 137412 137693 . + 0 ID=Physo133429;Parent=Physo133429;rank=2 scaffold_26 . exon 137412 137693 . + . ID=Physo133429.2;Parent=Physo133429;constitutive=1;rank=2 scaffold_26 . biological_region 139450 139456 0.999 - . logic_name=eponine scaffold_26 . biological_region 144289 144292 0.999 + . logic_name=eponine scaffold_26 . biological_region 145199 145205 0.999 - . logic_name=eponine scaffold_26 . biological_region 145506 145512 0.999 + . logic_name=eponine scaffold_26 . biological_region 145534 145536 0.999 + . logic_name=eponine scaffold_26 . biological_region 145557 145561 0.999 - . logic_name=eponine scaffold_26 . biological_region 145602 145602 0.999 - . logic_name=eponine scaffold_26 . biological_region 148884 148888 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 145126 146780 . + . ID=Physo133430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260036;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 145126 146780 . + . ID=Physo133430;Parent=Physo133430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 145126 146474 . + 0 ID=Physo133430;Parent=Physo133430;rank=1 scaffold_26 . exon 145126 146474 . + . ID=Physo133430.1;Parent=Physo133430;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 146552 146780 . + 0 ID=Physo133430;Parent=Physo133430;rank=2 scaffold_26 . exon 146552 146780 . + . ID=Physo133430.2;Parent=Physo133430;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . repeat_region 153969 153977 . ? . description=dust scaffold_26 ensembl protein_coding_gene 150061 152528 . - . ID=Physo133431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260037;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 150061 152528 . - . ID=Physo133431;Parent=Physo133431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 150061 150255 . - 0 ID=Physo133431;Parent=Physo133431;rank=5 scaffold_26 . exon 150061 150255 . - . ID=Physo133431.5;Parent=Physo133431;constitutive=1;rank=5 scaffold_26 . CDS 150471 150782 . - 0 ID=Physo133431;Parent=Physo133431;rank=4 scaffold_26 . exon 150471 150782 . - . ID=Physo133431.4;Parent=Physo133431;constitutive=1;rank=4 scaffold_26 . CDS 150869 151341 . - 0 ID=Physo133431;Parent=Physo133431;rank=3 scaffold_26 . exon 150869 151341 . - . ID=Physo133431.3;Parent=Physo133431;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 151468 151562 . - 0 ID=Physo133431;Parent=Physo133431;rank=2 scaffold_26 . exon 151468 151562 . - . ID=Physo133431.2;Parent=Physo133431;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 151938 152485 . - 0 ID=Physo133431;Parent=Physo133431;rank=1 scaffold_26 . exon 151938 152528 . - . ID=Physo133431.1;Parent=Physo133431;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 155333 157906 . + . ID=Physo133432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260038;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 155333 157906 . + . ID=Physo133432;Parent=Physo133432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 155333 155788 . + 0 ID=Physo133432;Parent=Physo133432;rank=1 scaffold_26 . exon 155333 155788 . + . ID=Physo133432.1;Parent=Physo133432;constitutive=1;rank=1 scaffold_26 . CDS 155865 157793 . + 0 ID=Physo133432;Parent=Physo133432;rank=2 scaffold_26 . exon 155865 157793 . + . ID=Physo133432.2;Parent=Physo133432;constitutive=1;rank=2 scaffold_26 . CDS 157859 157906 . + 0 ID=Physo133432;Parent=Physo133432;rank=3 scaffold_26 . exon 157859 157906 . + . ID=Physo133432.3;Parent=Physo133432;constitutive=1;rank=3 scaffold_26 ensembl protein_coding_gene 158710 163841 . - . ID=Physo133433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260039;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 158710 163841 . - . ID=Physo133433;Parent=Physo133433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 158710 158784 . - . ID=Physo133433.9;Parent=Physo133433;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_26 . CDS 158767 158784 . - 0 ID=Physo133433;Parent=Physo133433;rank=9 scaffold_26 . CDS 158833 159035 . - 0 ID=Physo133433;Parent=Physo133433;rank=8 scaffold_26 . exon 158833 159035 . - . ID=Physo133433.8;Parent=Physo133433;constitutive=1;ensembl_phase=1;rank=8 scaffold_26 . CDS 159273 161795 . - 0 ID=Physo133433;Parent=Physo133433;rank=7 scaffold_26 . exon 159273 161795 . - . ID=Physo133433.7;Parent=Physo133433;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_26 . CDS 162035 162222 . - 0 ID=Physo133433;Parent=Physo133433;rank=6 scaffold_26 . CDS 162296 162866 . - 0 ID=Physo133433;Parent=Physo133433;rank=5 scaffold_26 . CDS 162908 163100 . - 0 ID=Physo133433;Parent=Physo133433;rank=4 scaffold_26 . CDS 163251 163509 . - 0 ID=Physo133433;Parent=Physo133433;rank=3 scaffold_26 . CDS 163605 163727 . - 0 ID=Physo133433;Parent=Physo133433;rank=2 scaffold_26 . CDS 163753 163841 . - 0 ID=Physo133433;Parent=Physo133433;rank=1 scaffold_26 . biological_region 160989 160991 0.999 + . logic_name=eponine scaffold_26 . biological_region 161020 161025 0.999 - . logic_name=eponine scaffold_26 . biological_region 161594 161598 0.999 + . logic_name=eponine scaffold_26 . biological_region 161618 161625 0.999 + . logic_name=eponine scaffold_26 . biological_region 161680 161682 0.999 + . logic_name=eponine scaffold_26 . biological_region 163246 163249 0.999 + . logic_name=eponine scaffold_26 . biological_region 166165 166170 0.999 - . logic_name=eponine scaffold_26 . biological_region 169252 169253 0.999 - . logic_name=eponine scaffold_26 . exon 162035 162222 . - . ID=Physo133433.6;Parent=Physo133433;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_26 . exon 162296 162866 . - . ID=Physo133433.5;Parent=Physo133433;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_26 . exon 162908 163100 . - . ID=Physo133433.4;Parent=Physo133433;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_26 . exon 163251 163509 . - . ID=Physo133433.3;Parent=Physo133433;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . exon 163605 163727 . - . ID=Physo133433.2;Parent=Physo133433;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . exon 163753 163841 . - . ID=Physo133433.1;Parent=Physo133433;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 164010 165726 . - . ID=Physo133434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260040;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 164010 165726 . - . ID=Physo133434;Parent=Physo133434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 164010 164223 . - 0 ID=Physo133434;Parent=Physo133434;rank=4 scaffold_26 . exon 164010 164223 . - . ID=Physo133434.4;Parent=Physo133434;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 164301 165100 . - 0 ID=Physo133434;Parent=Physo133434;rank=3 scaffold_26 . exon 164301 165100 . - . ID=Physo133434.3;Parent=Physo133434;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 165183 165613 . - 0 ID=Physo133434;Parent=Physo133434;rank=2 scaffold_26 . exon 165183 165613 . - . ID=Physo133434.2;Parent=Physo133434;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 165702 165726 . - 0 ID=Physo133434;Parent=Physo133434;rank=1 scaffold_26 . exon 165702 165726 . - . ID=Physo133434.1;Parent=Physo133434;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 166618 167223 . + . ID=Physo156741;biotype=protein_coding;external_name=C_scaffold_26000025;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 166618 167223 . + . ID=Physo156741;Parent=Physo156741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 166618 166699 . + 0 ID=Physo156741;Parent=Physo156741;rank=1 scaffold_26 . exon 166618 166699 . + . ID=Physo156741.1;Parent=Physo156741;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 166765 166863 . + 0 ID=Physo156741;Parent=Physo156741;rank=2 scaffold_26 . exon 166765 166863 . + . ID=Physo156741.2;Parent=Physo156741;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 166955 167052 . + 0 ID=Physo156741;Parent=Physo156741;rank=3 scaffold_26 . exon 166955 167052 . + . ID=Physo156741.3;Parent=Physo156741;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 167122 167223 . + 0 ID=Physo156741;Parent=Physo156741;rank=4 scaffold_26 . exon 167122 167223 . + . ID=Physo156741.4;Parent=Physo156741;constitutive=1;rank=4 scaffold_26 . repeat_region 171400 171494 . ? . description=trf scaffold_26 . repeat_region 171400 171494 . ? . description=trf scaffold_26 . repeat_region 171404 171483 . ? . description=trf scaffold_26 . repeat_region 171442 171492 . ? . description=trf scaffold_26 . repeat_region 175199 175254 . ? . description=trf scaffold_26 . repeat_region 175199 175268 . ? . description=trf scaffold_26 . repeat_region 175241 175269 . ? . description=trf scaffold_26 . repeat_region 175565 175614 . ? . description=dust scaffold_26 . repeat_region 177151 177161 . ? . description=dust scaffold_26 ensembl protein_coding_gene 171266 172101 . + . ID=Physo133436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260042;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 171266 172101 . + . ID=Physo133436;Parent=Physo133436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 171266 171527 . + 0 ID=Physo133436;Parent=Physo133436;rank=1 scaffold_26 . exon 171266 171527 . + . ID=Physo133436.1;Parent=Physo133436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 171746 172101 . + 0 ID=Physo133436;Parent=Physo133436;rank=2 scaffold_26 . exon 171746 172101 . + . ID=Physo133436.2;Parent=Physo133436;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . biological_region 179968 179975 0.999 - . logic_name=eponine scaffold_26 . biological_region 180007 180010 0.999 - . logic_name=eponine scaffold_26 . biological_region 182915 182918 0.999 - . logic_name=eponine scaffold_26 . biological_region 185538 185541 0.999 - . logic_name=eponine scaffold_26 . biological_region 186875 186880 0.999 - . logic_name=eponine scaffold_26 . biological_region 188186 188190 0.999 + . logic_name=eponine scaffold_26 . biological_region 188292 188292 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 180627 182623 . - . ID=Physo115536;biotype=protein_coding;external_name=estExt_Genewise1.C_260177;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 180627 182623 . - . ID=Physo115536;Parent=Physo115536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 180627 180983 . - . ID=Physo115536.4;Parent=Physo115536;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_26 . CDS 180793 180983 . - 0 ID=Physo115536;Parent=Physo115536;rank=4 scaffold_26 . CDS 181065 182004 . - 0 ID=Physo115536;Parent=Physo115536;rank=3 scaffold_26 . exon 181065 182004 . - . ID=Physo115536.3;Parent=Physo115536;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_26 . CDS 182113 182327 . - 0 ID=Physo115536;Parent=Physo115536;rank=2 scaffold_26 . exon 182113 182327 . - . ID=Physo115536.2;Parent=Physo115536;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 182426 182528 . - 0 ID=Physo115536;Parent=Physo115536;rank=1 scaffold_26 . exon 182426 182623 . - . ID=Physo115536.1;Parent=Physo115536;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 183340 186692 . - . ID=Physo133438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260044;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 183340 186692 . - . ID=Physo133438;Parent=Physo133438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 183340 184079 . - 0 ID=Physo133438;Parent=Physo133438;rank=5 scaffold_26 . exon 183340 184079 . - . ID=Physo133438.5;Parent=Physo133438;constitutive=1;ensembl_phase=1;rank=5 scaffold_26 . CDS 184136 184796 . - 0 ID=Physo133438;Parent=Physo133438;rank=4 scaffold_26 . exon 184136 184796 . - . ID=Physo133438.4;Parent=Physo133438;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_26 . CDS 184827 185320 . - 0 ID=Physo133438;Parent=Physo133438;rank=3 scaffold_26 . exon 184827 185320 . - . ID=Physo133438.3;Parent=Physo133438;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 185850 186389 . - 0 ID=Physo133438;Parent=Physo133438;rank=2 scaffold_26 . exon 185850 186389 . - . ID=Physo133438.2;Parent=Physo133438;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 186419 186692 . - 0 ID=Physo133438;Parent=Physo133438;rank=1 scaffold_26 . exon 186419 186692 . - . ID=Physo133438.1;Parent=Physo133438;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . repeat_region 196328 196338 . ? . description=dust scaffold_26 . repeat_region 198277 198347 . ? . description=dust scaffold_26 . repeat_region 198278 198346 . ? . description=trf scaffold_26 ensembl protein_coding_gene 194117 198268 . - . ID=Physo133439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260045;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 194117 198268 . - . ID=Physo133439;Parent=Physo133439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 194117 194191 . - 0 ID=Physo133439;Parent=Physo133439;rank=7 scaffold_26 . exon 194117 194191 . - . ID=Physo133439.7;Parent=Physo133439;constitutive=1;rank=7 scaffold_26 . CDS 194232 195487 . - 0 ID=Physo133439;Parent=Physo133439;rank=6 scaffold_26 . exon 194232 195487 . - . ID=Physo133439.6;Parent=Physo133439;constitutive=1;ensembl_phase=1;rank=6 scaffold_26 . CDS 195582 195840 . - 0 ID=Physo133439;Parent=Physo133439;rank=5 scaffold_26 . exon 195582 195840 . - . ID=Physo133439.5;Parent=Physo133439;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_26 . CDS 195912 196304 . - 0 ID=Physo133439;Parent=Physo133439;rank=4 scaffold_26 . exon 195912 196304 . - . ID=Physo133439.4;Parent=Physo133439;constitutive=1;rank=4 scaffold_26 . CDS 196367 197253 . - 0 ID=Physo133439;Parent=Physo133439;rank=3 scaffold_26 . exon 196367 197253 . - . ID=Physo133439.3;Parent=Physo133439;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 197353 198148 . - 0 ID=Physo133439;Parent=Physo133439;rank=2 scaffold_26 . exon 197353 198148 . - . ID=Physo133439.2;Parent=Physo133439;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 198230 198268 . - 0 ID=Physo133439;Parent=Physo133439;rank=1 scaffold_26 . exon 198230 198268 . - . ID=Physo133439.1;Parent=Physo133439;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 202179 203122 . + . ID=Physo133440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260046;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 202179 203122 . + . ID=Physo133440;Parent=Physo133440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 202179 203058 . + 0 ID=Physo133440;Parent=Physo133440;rank=1 scaffold_26 . exon 202179 203058 . + . ID=Physo133440.1;Parent=Physo133440;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 203097 203122 . + 0 ID=Physo133440;Parent=Physo133440;rank=2 scaffold_26 . exon 203097 203122 . + . ID=Physo133440.2;Parent=Physo133440;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 207253 215998 . + . ID=Physo133441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260047;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 207253 215998 . + . ID=Physo133441;Parent=Physo133441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 207253 208025 . + 0 ID=Physo133441;Parent=Physo133441;rank=1 scaffold_26 . exon 207253 208025 . + . ID=Physo133441.1;Parent=Physo133441;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 208188 208325 . + 0 ID=Physo133441;Parent=Physo133441;rank=2 scaffold_26 . exon 208188 208325 . + . ID=Physo133441.2;Parent=Physo133441;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . CDS 208557 209216 . + 0 ID=Physo133441;Parent=Physo133441;rank=3 scaffold_26 . exon 208557 209216 . + . ID=Physo133441.3;Parent=Physo133441;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_26 . CDS 209297 210351 . + 0 ID=Physo133441;Parent=Physo133441;rank=4 scaffold_26 . CDS 210394 210767 . + 0 ID=Physo133441;Parent=Physo133441;rank=5 scaffold_26 . CDS 211103 211324 . + 0 ID=Physo133441;Parent=Physo133441;rank=6 scaffold_26 . CDS 211349 212551 . + 0 ID=Physo133441;Parent=Physo133441;rank=7 scaffold_26 . CDS 212581 214125 . + 0 ID=Physo133441;Parent=Physo133441;rank=8 scaffold_26 . CDS 214292 214471 . + 0 ID=Physo133441;Parent=Physo133441;rank=9 scaffold_26 . CDS 214640 215998 . + 0 ID=Physo133441;Parent=Physo133441;rank=10 scaffold_26 . repeat_region 217363 217407 . ? . description=trf scaffold_26 . repeat_region 218027 218064 . ? . description=trf scaffold_26 . biological_region 218914 218918 0.999 - . logic_name=eponine scaffold_26 . biological_region 219008 219010 0.999 - . logic_name=eponine scaffold_26 . exon 209297 210351 . + . ID=Physo133441.4;Parent=Physo133441;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_26 . exon 210394 210767 . + . ID=Physo133441.5;Parent=Physo133441;constitutive=1;ensembl_phase=1;rank=5 scaffold_26 . exon 211103 211324 . + . ID=Physo133441.6;Parent=Physo133441;constitutive=1;rank=6 scaffold_26 . exon 211349 212551 . + . ID=Physo133441.7;Parent=Physo133441;constitutive=1;rank=7 scaffold_26 . exon 212581 214125 . + . ID=Physo133441.8;Parent=Physo133441;constitutive=1;rank=8 scaffold_26 . exon 214292 214471 . + . ID=Physo133441.9;Parent=Physo133441;constitutive=1;rank=9 scaffold_26 . exon 214640 215998 . + . ID=Physo133441.10;Parent=Physo133441;constitutive=1;rank=10 scaffold_26 ensembl protein_coding_gene 216379 219537 . - . ID=Physo133442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260048;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 216379 219537 . - . ID=Physo133442;Parent=Physo133442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 216379 219537 . - 0 ID=Physo133442;Parent=Physo133442;rank=1 scaffold_26 . exon 216379 219537 . - . ID=Physo133442.1;Parent=Physo133442;constitutive=1;rank=1 scaffold_26 . repeat_region 220709 220758 . ? . description=dust scaffold_26 . repeat_region 221362 221370 . ? . description=dust scaffold_26 . repeat_region 223459 223468 . ? . description=dust scaffold_26 . repeat_region 224687 230073 . ? . description=dust scaffold_26 . repeat_region 236124 236165 . ? . description=trf scaffold_26 ensembl protein_coding_gene 233797 234740 . - . ID=Physo133443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260049;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 233797 234740 . - . ID=Physo133443;Parent=Physo133443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 233797 233822 . - 0 ID=Physo133443;Parent=Physo133443;rank=2 scaffold_26 . exon 233797 233822 . - . ID=Physo133443.2;Parent=Physo133443;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 233861 234740 . - 0 ID=Physo133443;Parent=Physo133443;rank=1 scaffold_26 . exon 233861 234740 . - . ID=Physo133443.1;Parent=Physo133443;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . repeat_region 241609 241618 . ? . description=dust scaffold_26 . repeat_region 242924 242931 . ? . description=dust scaffold_26 . repeat_region 243775 243783 . ? . description=dust scaffold_26 . repeat_region 244557 244587 . ? . description=dust scaffold_26 . biological_region 244681 244685 0.999 + . logic_name=eponine scaffold_26 . biological_region 246751 246752 0.999 - . logic_name=eponine scaffold_26 . biological_region 247342 247343 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 245402 246952 . - . ID=Physo133444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260050;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 245402 246952 . - . ID=Physo133444;Parent=Physo133444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 245402 246952 . - 0 ID=Physo133444;Parent=Physo133444;rank=1 scaffold_26 . exon 245402 246952 . - . ID=Physo133444.1;Parent=Physo133444;constitutive=1;rank=1 scaffold_26 . repeat_region 256939 256958 . ? . description=trf scaffold_26 ensembl protein_coding_gene 252795 256038 . + . ID=Physo108703;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260004;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 252795 256038 . + . ID=Physo108703;Parent=Physo108703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 252795 255995 . + 0 ID=Physo108703;Parent=Physo108703;rank=1 scaffold_26 . exon 252795 256038 . + . ID=Physo108703.1;Parent=Physo108703;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 258953 259552 . - . ID=Physo108704;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260005;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 258953 259552 . - . ID=Physo108704;Parent=Physo108704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 258953 259552 . - 0 ID=Physo108704;Parent=Physo108704;rank=1 scaffold_26 . exon 258953 259552 . - . ID=Physo108704.1;Parent=Physo108704;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 256511 258028 . + . ID=Physo133446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260052;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 256511 258028 . + . ID=Physo133446;Parent=Physo133446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 256511 258028 . + 0 ID=Physo133446;Parent=Physo133446;rank=1 scaffold_26 . exon 256511 258028 . + . ID=Physo133446.1;Parent=Physo133446;constitutive=1;rank=1 scaffold_26 . biological_region 259294 259302 0.999 + . logic_name=eponine scaffold_26 . biological_region 259300 259305 0.999 - . logic_name=eponine scaffold_26 . biological_region 259334 259337 0.999 - . logic_name=eponine scaffold_26 . biological_region 261178 261180 0.999 + . logic_name=eponine scaffold_26 . repeat_region 264837 264857 . ? . description=dust scaffold_26 . biological_region 267372 267372 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 260566 261657 . + . ID=Physo115551;biotype=protein_coding;external_name=estExt_Genewise1.C_260192;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 260566 261657 . + . ID=Physo115551;Parent=Physo115551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 260566 260666 . + . ID=Physo115551.1;Parent=Physo115551;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 260570 260666 . + 0 ID=Physo115551;Parent=Physo115551;rank=1 scaffold_26 . CDS 260739 261541 . + 0 ID=Physo115551;Parent=Physo115551;rank=2 scaffold_26 . exon 260739 261657 . + . ID=Physo115551.2;Parent=Physo115551;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 261868 264822 . - . ID=Physo133449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260055;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 261868 264822 . - . ID=Physo133449;Parent=Physo133449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 261868 261963 . - 0 ID=Physo133449;Parent=Physo133449;rank=6 scaffold_26 . exon 261868 261963 . - . ID=Physo133449.6;Parent=Physo133449;constitutive=1;rank=6 scaffold_26 . CDS 262045 263203 . - 0 ID=Physo133449;Parent=Physo133449;rank=5 scaffold_26 . exon 262045 263203 . - . ID=Physo133449.5;Parent=Physo133449;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 263380 263459 . - 0 ID=Physo133449;Parent=Physo133449;rank=4 scaffold_26 . exon 263380 263459 . - . ID=Physo133449.4;Parent=Physo133449;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_26 . CDS 263543 264289 . - 0 ID=Physo133449;Parent=Physo133449;rank=3 scaffold_26 . exon 263543 264289 . - . ID=Physo133449.3;Parent=Physo133449;constitutive=1;rank=3 scaffold_26 . CDS 264359 264425 . - 0 ID=Physo133449;Parent=Physo133449;rank=2 scaffold_26 . exon 264359 264425 . - . ID=Physo133449.2;Parent=Physo133449;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 264503 264822 . - 0 ID=Physo133449;Parent=Physo133449;rank=1 scaffold_26 . exon 264503 264822 . - . ID=Physo133449.1;Parent=Physo133449;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 265920 267521 . + . ID=Physo133450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260056;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 265920 267521 . + . ID=Physo133450;Parent=Physo133450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 265920 266121 . + 0 ID=Physo133450;Parent=Physo133450;rank=1 scaffold_26 . exon 265920 266121 . + . ID=Physo133450.1;Parent=Physo133450;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 266194 266300 . + 0 ID=Physo133450;Parent=Physo133450;rank=2 scaffold_26 . exon 266194 266300 . + . ID=Physo133450.2;Parent=Physo133450;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 266373 267521 . + 0 ID=Physo133450;Parent=Physo133450;rank=3 scaffold_26 . exon 266373 267521 . + . ID=Physo133450.3;Parent=Physo133450;constitutive=1;rank=3 scaffold_26 ensembl protein_coding_gene 267692 270454 . - . ID=Physo133451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260057;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 267692 270454 . - . ID=Physo133451;Parent=Physo133451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 267692 270454 . - 0 ID=Physo133451;Parent=Physo133451;rank=1 scaffold_26 . exon 267692 270454 . - . ID=Physo133451.1;Parent=Physo133451;constitutive=1;rank=1 scaffold_26 . repeat_region 273047 273367 . ? . description=trf scaffold_26 . repeat_region 273054 273367 . ? . description=trf scaffold_26 . repeat_region 274385 274407 . ? . description=trf scaffold_26 ensembl protein_coding_gene 272630 274210 . - . ID=Physo133452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260058;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 272630 274210 . - . ID=Physo133452;Parent=Physo133452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 272630 274210 . - 0 ID=Physo133452;Parent=Physo133452;rank=1 scaffold_26 . exon 272630 274210 . - . ID=Physo133452.1;Parent=Physo133452;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 275164 276279 . - . ID=Physo133453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260059;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 275164 276279 . - . ID=Physo133453;Parent=Physo133453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 275164 276279 . - 0 ID=Physo133453;Parent=Physo133453;rank=1 scaffold_26 . exon 275164 276279 . - . ID=Physo133453.1;Parent=Physo133453;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 282923 285184 . - . ID=Physo156742;biotype=protein_coding;external_name=C_scaffold_26000026;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 282923 285184 . - . ID=Physo156742;Parent=Physo156742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 282923 283410 . - 0 ID=Physo156742;Parent=Physo156742;rank=5 scaffold_26 . exon 282923 283410 . - . ID=Physo156742.5;Parent=Physo156742;constitutive=1;ensembl_phase=1;rank=5 scaffold_26 . CDS 283490 283887 . - 0 ID=Physo156742;Parent=Physo156742;rank=4 scaffold_26 . exon 283490 283887 . - . ID=Physo156742.4;Parent=Physo156742;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 284382 284464 . - 0 ID=Physo156742;Parent=Physo156742;rank=3 scaffold_26 . exon 284382 284464 . - . ID=Physo156742.3;Parent=Physo156742;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 284529 284606 . - 0 ID=Physo156742;Parent=Physo156742;rank=2 scaffold_26 . exon 284529 284606 . - . ID=Physo156742.2;Parent=Physo156742;constitutive=1;rank=2 scaffold_26 . CDS 285062 285184 . - 0 ID=Physo156742;Parent=Physo156742;rank=1 scaffold_26 . exon 285062 285184 . - . ID=Physo156742.1;Parent=Physo156742;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 285342 286504 . + . ID=Physo156743;biotype=protein_coding;external_name=C_scaffold_26000027;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 285342 286504 . + . ID=Physo156743;Parent=Physo156743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 285342 285797 . + 0 ID=Physo156743;Parent=Physo156743;rank=1 scaffold_26 . exon 285342 285797 . + . ID=Physo156743.1;Parent=Physo156743;constitutive=1;rank=1 scaffold_26 . CDS 285837 286087 . + 0 ID=Physo156743;Parent=Physo156743;rank=2 scaffold_26 . exon 285837 286087 . + . ID=Physo156743.2;Parent=Physo156743;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 286163 286504 . + 0 ID=Physo156743;Parent=Physo156743;rank=3 scaffold_26 . exon 286163 286504 . + . ID=Physo156743.3;Parent=Physo156743;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_26 ensembl protein_coding_gene 288730 291622 . - . ID=Physo156744;biotype=protein_coding;external_name=C_scaffold_26000028;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 288730 291622 . - . ID=Physo156744;Parent=Physo156744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 288730 288740 . - 0 ID=Physo156744;Parent=Physo156744;rank=6 scaffold_26 . exon 288730 288740 . - . ID=Physo156744.6;Parent=Physo156744;constitutive=1;ensembl_phase=1;rank=6 scaffold_26 . CDS 288810 288850 . - 0 ID=Physo156744;Parent=Physo156744;rank=5 scaffold_26 . exon 288810 288850 . - . ID=Physo156744.5;Parent=Physo156744;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 289062 289588 . - 0 ID=Physo156744;Parent=Physo156744;rank=4 scaffold_26 . CDS 289637 290369 . - 0 ID=Physo156744;Parent=Physo156744;rank=3 scaffold_26 . CDS 290493 290997 . - 0 ID=Physo156744;Parent=Physo156744;rank=2 scaffold_26 . CDS 291169 291622 . - 0 ID=Physo156744;Parent=Physo156744;rank=1 scaffold_26 . repeat_region 293090 293133 . ? . description=trf scaffold_26 . biological_region 295763 295767 0.999 - . logic_name=eponine scaffold_26 . biological_region 296706 296711 0.999 + . logic_name=eponine scaffold_26 . biological_region 296809 296813 0.999 + . logic_name=eponine scaffold_26 . biological_region 296841 296842 0.999 - . logic_name=eponine scaffold_26 . biological_region 296849 296855 0.999 - . logic_name=eponine scaffold_26 . biological_region 296870 296875 0.999 + . logic_name=eponine scaffold_26 . biological_region 296929 296934 0.999 - . logic_name=eponine scaffold_26 . biological_region 296935 296942 0.999 + . logic_name=eponine scaffold_26 . biological_region 296984 296989 0.999 + . logic_name=eponine scaffold_26 . biological_region 297473 297475 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 294450 297149 . - . ID=Physo133458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260064;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 294450 297149 . - . ID=Physo133458;Parent=Physo133458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 294450 297032 . - 0 ID=Physo133458;Parent=Physo133458;rank=2 scaffold_26 . exon 294450 297032 . - . ID=Physo133458.2;Parent=Physo133458;constitutive=1;rank=2 scaffold_26 . CDS 297108 297149 . - 0 ID=Physo133458;Parent=Physo133458;rank=1 scaffold_26 . exon 297108 297149 . - . ID=Physo133458.1;Parent=Physo133458;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 297351 301566 . + . ID=Physo133459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260065;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 297351 301566 . + . ID=Physo133459;Parent=Physo133459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 297351 300784 . + 0 ID=Physo133459;Parent=Physo133459;rank=1 scaffold_26 . exon 297351 300784 . + . ID=Physo133459.1;Parent=Physo133459;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 300862 300930 . + 0 ID=Physo133459;Parent=Physo133459;rank=2 scaffold_26 . CDS 301012 301106 . + 0 ID=Physo133459;Parent=Physo133459;rank=3 scaffold_26 . CDS 301313 301566 . + 0 ID=Physo133459;Parent=Physo133459;rank=4 scaffold_26 . exon 289062 289588 . - . ID=Physo156744.4;Parent=Physo156744;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_26 . exon 289637 290369 . - . ID=Physo156744.3;Parent=Physo156744;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . exon 290493 290997 . - . ID=Physo156744.2;Parent=Physo156744;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . exon 291169 291622 . - . ID=Physo156744.1;Parent=Physo156744;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 292063 293228 . - . ID=Physo156746;biotype=protein_coding;external_name=C_scaffold_26000030;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 292063 293228 . - . ID=Physo156746;Parent=Physo156746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 292063 292404 . - 0 ID=Physo156746;Parent=Physo156746;rank=2 scaffold_26 . exon 292063 292404 . - . ID=Physo156746.2;Parent=Physo156746;constitutive=1;rank=2 scaffold_26 . CDS 292494 293228 . - 0 ID=Physo156746;Parent=Physo156746;rank=1 scaffold_26 . exon 292494 293228 . - . ID=Physo156746.1;Parent=Physo156746;constitutive=1;rank=1 scaffold_26 . repeat_region 300980 301009 . ? . description=dust scaffold_26 ensembl protein_coding_gene 308592 310181 . + . ID=Physo108705;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260006;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 308592 310181 . + . ID=Physo108705;Parent=Physo108705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 308592 308722 . + 0 ID=Physo108705;Parent=Physo108705;rank=1 scaffold_26 . exon 308592 308722 . + . ID=Physo108705.1;Parent=Physo108705;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 308827 309417 . + 0 ID=Physo108705;Parent=Physo108705;rank=2 scaffold_26 . CDS 309489 309774 . + 0 ID=Physo108705;Parent=Physo108705;rank=3 scaffold_26 . CDS 309848 310084 . + 0 ID=Physo108705;Parent=Physo108705;rank=4 scaffold_26 . exon 300862 300930 . + . ID=Physo133459.2;Parent=Physo133459;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . exon 301012 301106 . + . ID=Physo133459.3;Parent=Physo133459;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . exon 301313 301566 . + . ID=Physo133459.4;Parent=Physo133459;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 ensembl protein_coding_gene 302514 303878 . - . ID=Physo133460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260066;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 302514 303878 . - . ID=Physo133460;Parent=Physo133460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 302514 303878 . - 0 ID=Physo133460;Parent=Physo133460;rank=1 scaffold_26 . exon 302514 303878 . - . ID=Physo133460.1;Parent=Physo133460;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 305372 305860 . - . ID=Physo133461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260067;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 305372 305860 . - . ID=Physo133461;Parent=Physo133461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 305372 305860 . - 0 ID=Physo133461;Parent=Physo133461;rank=1 scaffold_26 . exon 305372 305860 . - . ID=Physo133461.1;Parent=Physo133461;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 306827 307315 . + . ID=Physo133462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260068;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 306827 307315 . + . ID=Physo133462;Parent=Physo133462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 306827 307315 . + 0 ID=Physo133462;Parent=Physo133462;rank=1 scaffold_26 . exon 306827 307315 . + . ID=Physo133462.1;Parent=Physo133462;constitutive=1;rank=1 scaffold_26 . biological_region 310520 310522 0.999 - . logic_name=eponine scaffold_26 . exon 308827 309417 . + . ID=Physo108705.2;Parent=Physo108705;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_26 . exon 309489 309774 . + . ID=Physo108705.3;Parent=Physo108705;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . exon 309848 310181 . + . ID=Physo108705.4;Parent=Physo108705;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_26 ensembl protein_coding_gene 312282 313085 . + . ID=Physo108706;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260007;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 312282 313085 . + . ID=Physo108706;Parent=Physo108706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 312282 313085 . + . ID=Physo108706.1;Parent=Physo108706;constitutive=1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 312345 313085 . + 0 ID=Physo108706;Parent=Physo108706;rank=1 scaffold_26 ensembl protein_coding_gene 310344 312044 . + . ID=Physo133464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260070;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 310344 312044 . + . ID=Physo133464;Parent=Physo133464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 310344 310600 . + 0 ID=Physo133464;Parent=Physo133464;rank=1 scaffold_26 . exon 310344 310600 . + . ID=Physo133464.1;Parent=Physo133464;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 310701 310846 . + 0 ID=Physo133464;Parent=Physo133464;rank=2 scaffold_26 . exon 310701 310846 . + . ID=Physo133464.2;Parent=Physo133464;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 310920 311361 . + 0 ID=Physo133464;Parent=Physo133464;rank=3 scaffold_26 . exon 310920 311361 . + . ID=Physo133464.3;Parent=Physo133464;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_26 . CDS 311444 311729 . + 0 ID=Physo133464;Parent=Physo133464;rank=4 scaffold_26 . exon 311444 311729 . + . ID=Physo133464.4;Parent=Physo133464;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 311811 312044 . + 0 ID=Physo133464;Parent=Physo133464;rank=5 scaffold_26 . exon 311811 312044 . + . ID=Physo133464.5;Parent=Physo133464;constitutive=1;rank=5 scaffold_26 ensembl protein_coding_gene 316182 317812 . - . ID=Physo133466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260072;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 316182 317812 . - . ID=Physo133466;Parent=Physo133466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 316182 316247 . - 0 ID=Physo133466;Parent=Physo133466;rank=6 scaffold_26 . exon 316182 316247 . - . ID=Physo133466.6;Parent=Physo133466;constitutive=1;rank=6 scaffold_26 . CDS 316325 316480 . - 0 ID=Physo133466;Parent=Physo133466;rank=5 scaffold_26 . exon 316325 316480 . - . ID=Physo133466.5;Parent=Physo133466;constitutive=1;rank=5 scaffold_26 . CDS 316550 317011 . - 0 ID=Physo133466;Parent=Physo133466;rank=4 scaffold_26 . exon 316550 317011 . - . ID=Physo133466.4;Parent=Physo133466;constitutive=1;rank=4 scaffold_26 . CDS 317075 317380 . - 0 ID=Physo133466;Parent=Physo133466;rank=3 scaffold_26 . exon 317075 317380 . - . ID=Physo133466.3;Parent=Physo133466;constitutive=1;rank=3 scaffold_26 . CDS 317460 317557 . - 0 ID=Physo133466;Parent=Physo133466;rank=2 scaffold_26 . exon 317460 317557 . - . ID=Physo133466.2;Parent=Physo133466;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 317627 317783 . - 0 ID=Physo133466;Parent=Physo133466;rank=1 scaffold_26 . exon 317627 317812 . - . ID=Physo133466.1;Parent=Physo133466;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 318468 318845 . + . ID=Physo133467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260073;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 318468 318845 . + . ID=Physo133467;Parent=Physo133467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 318468 318845 . + 0 ID=Physo133467;Parent=Physo133467;rank=1 scaffold_26 . exon 318468 318845 . + . ID=Physo133467.1;Parent=Physo133467;constitutive=1;rank=1 scaffold_26 . repeat_region 318756 318782 . ? . description=trf scaffold_26 . repeat_region 320187 320208 . ? . description=trf scaffold_26 . repeat_region 321472 321520 . ? . description=dust scaffold_26 . repeat_region 322095 322111 . ? . description=dust scaffold_26 ensembl protein_coding_gene 319460 320395 . - . ID=Physo133468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260074;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 319460 320395 . - . ID=Physo133468;Parent=Physo133468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 319460 320137 . - . ID=Physo133468.2;Parent=Physo133468;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_26 . CDS 319764 320137 . - 0 ID=Physo133468;Parent=Physo133468;rank=2 scaffold_26 . CDS 320224 320395 . - 0 ID=Physo133468;Parent=Physo133468;rank=1 scaffold_26 . exon 320224 320395 . - . ID=Physo133468.1;Parent=Physo133468;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 327195 329534 . - . ID=Physo133470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260076;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 327195 329534 . - . ID=Physo133470;Parent=Physo133470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 327195 329534 . - . ID=Physo133470.1;Parent=Physo133470;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 . CDS 327333 329534 . - 0 ID=Physo133470;Parent=Physo133470;rank=1 scaffold_26 ensembl protein_coding_gene 320546 326944 . + . ID=Physo156752;biotype=protein_coding;external_name=C_scaffold_26000036;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 320546 326944 . + . ID=Physo156752;Parent=Physo156752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 320546 320912 . + 0 ID=Physo156752;Parent=Physo156752;rank=1 scaffold_26 . exon 320546 320912 . + . ID=Physo156752.1;Parent=Physo156752;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 320987 321104 . + 0 ID=Physo156752;Parent=Physo156752;rank=2 scaffold_26 . exon 320987 321104 . + . ID=Physo156752.2;Parent=Physo156752;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 321180 321364 . + 0 ID=Physo156752;Parent=Physo156752;rank=3 scaffold_26 . exon 321180 321364 . + . ID=Physo156752.3;Parent=Physo156752;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 321452 321681 . + 0 ID=Physo156752;Parent=Physo156752;rank=4 scaffold_26 . exon 321452 321681 . + . ID=Physo156752.4;Parent=Physo156752;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 321765 321847 . + 0 ID=Physo156752;Parent=Physo156752;rank=5 scaffold_26 . exon 321765 321847 . + . ID=Physo156752.5;Parent=Physo156752;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_26 . CDS 321923 322037 . + 0 ID=Physo156752;Parent=Physo156752;rank=6 scaffold_26 . exon 321923 322037 . + . ID=Physo156752.6;Parent=Physo156752;constitutive=1;ensembl_phase=2;rank=6 scaffold_26 . CDS 322117 322207 . + 0 ID=Physo156752;Parent=Physo156752;rank=7 scaffold_26 . exon 322117 322207 . + . ID=Physo156752.7;Parent=Physo156752;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_26 . CDS 322278 322747 . + 0 ID=Physo156752;Parent=Physo156752;rank=8 scaffold_26 . exon 322278 322747 . + . ID=Physo156752.8;Parent=Physo156752;constitutive=1;ensembl_phase=1;rank=8 scaffold_26 . CDS 323411 323658 . + 0 ID=Physo156752;Parent=Physo156752;rank=9 scaffold_26 . exon 323411 323658 . + . ID=Physo156752.9;Parent=Physo156752;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_26 . CDS 323724 323945 . + 0 ID=Physo156752;Parent=Physo156752;rank=10 scaffold_26 . exon 323724 323945 . + . ID=Physo156752.10;Parent=Physo156752;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_26 . CDS 324013 324157 . + 0 ID=Physo156752;Parent=Physo156752;rank=11 scaffold_26 . exon 324013 324157 . + . ID=Physo156752.11;Parent=Physo156752;constitutive=1;ensembl_phase=2;rank=11 scaffold_26 . CDS 324246 324313 . + 0 ID=Physo156752;Parent=Physo156752;rank=12 scaffold_26 . exon 324246 324313 . + . ID=Physo156752.12;Parent=Physo156752;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_26 . CDS 324382 324427 . + 0 ID=Physo156752;Parent=Physo156752;rank=13 scaffold_26 . exon 324382 324427 . + . ID=Physo156752.13;Parent=Physo156752;constitutive=1;ensembl_phase=2;rank=13 scaffold_26 . CDS 324508 325142 . + 0 ID=Physo156752;Parent=Physo156752;rank=14 scaffold_26 . exon 324508 325142 . + . ID=Physo156752.14;Parent=Physo156752;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_26 . CDS 325253 325538 . + 0 ID=Physo156752;Parent=Physo156752;rank=15 scaffold_26 . exon 325253 325538 . + . ID=Physo156752.15;Parent=Physo156752;constitutive=1;ensembl_phase=2;rank=15 scaffold_26 . CDS 325608 325742 . + 0 ID=Physo156752;Parent=Physo156752;rank=16 scaffold_26 . exon 325608 325742 . + . ID=Physo156752.16;Parent=Physo156752;constitutive=1;rank=16 scaffold_26 . CDS 325818 326387 . + 0 ID=Physo156752;Parent=Physo156752;rank=17 scaffold_26 . exon 325818 326387 . + . ID=Physo156752.17;Parent=Physo156752;constitutive=1;rank=17 scaffold_26 . CDS 326462 326617 . + 0 ID=Physo156752;Parent=Physo156752;rank=18 scaffold_26 . exon 326462 326617 . + . ID=Physo156752.18;Parent=Physo156752;constitutive=1;rank=18 scaffold_26 . CDS 326663 326944 . + 0 ID=Physo156752;Parent=Physo156752;rank=19 scaffold_26 . exon 326663 326944 . + . ID=Physo156752.19;Parent=Physo156752;constitutive=1;rank=19 scaffold_26 . biological_region 329297 329300 0.999 + . logic_name=eponine scaffold_26 . biological_region 329341 329345 0.999 - . logic_name=eponine scaffold_26 . biological_region 329367 329374 0.999 + . logic_name=eponine scaffold_26 . biological_region 329385 329386 0.999 + . logic_name=eponine scaffold_26 . biological_region 329395 329399 0.999 + . logic_name=eponine scaffold_26 . biological_region 329455 329458 0.999 - . logic_name=eponine scaffold_26 . biological_region 329478 329485 0.999 - . logic_name=eponine scaffold_26 . biological_region 329552 329552 0.999 - . logic_name=eponine scaffold_26 . biological_region 329573 329579 0.999 - . logic_name=eponine scaffold_26 . biological_region 329995 329995 0.999 + . logic_name=eponine scaffold_26 . biological_region 334539 334540 0.999 + . logic_name=eponine scaffold_26 . biological_region 334678 334681 0.999 + . logic_name=eponine scaffold_26 . biological_region 334736 334744 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 332550 334795 . - . ID=Physo133471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260077;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 332550 334795 . - . ID=Physo133471;Parent=Physo133471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 332550 332932 . - . ID=Physo133471.6;Parent=Physo133471;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_26 . CDS 332612 332932 . - 0 ID=Physo133471;Parent=Physo133471;rank=6 scaffold_26 . CDS 333018 333048 . - 0 ID=Physo133471;Parent=Physo133471;rank=5 scaffold_26 . exon 333018 333048 . - . ID=Physo133471.5;Parent=Physo133471;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 333145 333914 . - 0 ID=Physo133471;Parent=Physo133471;rank=4 scaffold_26 . exon 333145 333914 . - . ID=Physo133471.4;Parent=Physo133471;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_26 . CDS 333987 334062 . - 0 ID=Physo133471;Parent=Physo133471;rank=3 scaffold_26 . exon 333987 334062 . - . ID=Physo133471.3;Parent=Physo133471;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 334180 334325 . - 0 ID=Physo133471;Parent=Physo133471;rank=2 scaffold_26 . exon 334180 334325 . - . ID=Physo133471.2;Parent=Physo133471;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 334418 334795 . - 0 ID=Physo133471;Parent=Physo133471;rank=1 scaffold_26 . exon 334418 334795 . - . ID=Physo133471.1;Parent=Physo133471;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 335886 336981 . + . ID=Physo133472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260078;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 335886 336981 . + . ID=Physo133472;Parent=Physo133472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 335886 336833 . + 0 ID=Physo133472;Parent=Physo133472;rank=1 scaffold_26 . exon 335886 336833 . + . ID=Physo133472.1;Parent=Physo133472;constitutive=1;rank=1 scaffold_26 . CDS 336964 336981 . + 0 ID=Physo133472;Parent=Physo133472;rank=2 scaffold_26 . exon 336964 336981 . + . ID=Physo133472.2;Parent=Physo133472;constitutive=1;rank=2 scaffold_26 . repeat_region 343183 343190 . ? . description=dust scaffold_26 . repeat_region 343754 343802 . ? . description=trf scaffold_26 ensembl protein_coding_gene 339059 341317 . + . ID=Physo133473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260079;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 339059 341317 . + . ID=Physo133473;Parent=Physo133473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 339059 341317 . + 0 ID=Physo133473;Parent=Physo133473;rank=1 scaffold_26 . exon 339059 341317 . + . ID=Physo133473.1;Parent=Physo133473;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 342548 343114 . - . ID=Physo133474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260080;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 342548 343114 . - . ID=Physo133474;Parent=Physo133474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 342548 343114 . - 0 ID=Physo133474;Parent=Physo133474;rank=1 scaffold_26 . exon 342548 343114 . - . ID=Physo133474.1;Parent=Physo133474;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 343602 346531 . + . ID=Physo133475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260081;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 343602 346531 . + . ID=Physo133475;Parent=Physo133475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 343602 346367 . + 0 ID=Physo133475;Parent=Physo133475;rank=1 scaffold_26 . exon 343602 346531 . + . ID=Physo133475.1;Parent=Physo133475;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 346569 348821 . - . ID=Physo133476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260082;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 346569 348821 . - . ID=Physo133476;Parent=Physo133476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 346569 346752 . - 0 ID=Physo133476;Parent=Physo133476;rank=9 scaffold_26 . exon 346569 346752 . - . ID=Physo133476.9;Parent=Physo133476;constitutive=1;ensembl_phase=2;rank=9 scaffold_26 . CDS 346825 346891 . - 0 ID=Physo133476;Parent=Physo133476;rank=8 scaffold_26 . exon 346825 346891 . - . ID=Physo133476.8;Parent=Physo133476;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_26 . CDS 346949 347337 . - 0 ID=Physo133476;Parent=Physo133476;rank=7 scaffold_26 . exon 346949 347337 . - . ID=Physo133476.7;Parent=Physo133476;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_26 . CDS 347403 347611 . - 0 ID=Physo133476;Parent=Physo133476;rank=6 scaffold_26 . exon 347403 347611 . - . ID=Physo133476.6;Parent=Physo133476;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_26 . CDS 347693 347735 . - 0 ID=Physo133476;Parent=Physo133476;rank=5 scaffold_26 . exon 347693 347735 . - . ID=Physo133476.5;Parent=Physo133476;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 347959 348026 . - 0 ID=Physo133476;Parent=Physo133476;rank=4 scaffold_26 . exon 347959 348026 . - . ID=Physo133476.4;Parent=Physo133476;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_26 . CDS 348099 348272 . - 0 ID=Physo133476;Parent=Physo133476;rank=3 scaffold_26 . exon 348099 348272 . - . ID=Physo133476.3;Parent=Physo133476;constitutive=1;rank=3 scaffold_26 . CDS 348351 348560 . - 0 ID=Physo133476;Parent=Physo133476;rank=2 scaffold_26 . exon 348351 348560 . - . ID=Physo133476.2;Parent=Physo133476;constitutive=1;rank=2 scaffold_26 . CDS 348624 348821 . - 0 ID=Physo133476;Parent=Physo133476;rank=1 scaffold_26 . exon 348624 348821 . - . ID=Physo133476.1;Parent=Physo133476;constitutive=1;rank=1 scaffold_26 . biological_region 349044 349047 0.999 + . logic_name=eponine scaffold_26 . biological_region 349772 349776 0.999 + . logic_name=eponine scaffold_26 . biological_region 349911 349912 0.999 - . logic_name=eponine scaffold_26 . biological_region 351631 351632 0.999 + . logic_name=eponine scaffold_26 . biological_region 351699 351702 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 352510 355702 . - . ID=Physo115405;biotype=protein_coding;external_name=estExt_Genewise1.C_260046;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 352510 355702 . - . ID=Physo115405;Parent=Physo115405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 352510 352759 . - . ID=Physo115405.6;Parent=Physo115405;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_26 . CDS 352602 352759 . - 0 ID=Physo115405;Parent=Physo115405;rank=6 scaffold_26 . CDS 352851 353278 . - 0 ID=Physo115405;Parent=Physo115405;rank=5 scaffold_26 . exon 352851 353278 . - . ID=Physo115405.5;Parent=Physo115405;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 353984 354037 . - 0 ID=Physo115405;Parent=Physo115405;rank=4 scaffold_26 . exon 353984 354037 . - . ID=Physo115405.4;Parent=Physo115405;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_26 . CDS 354056 354198 . - 0 ID=Physo115405;Parent=Physo115405;rank=3 scaffold_26 . exon 354056 354198 . - . ID=Physo115405.3;Parent=Physo115405;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 355035 355180 . - 0 ID=Physo115405;Parent=Physo115405;rank=2 scaffold_26 . exon 355035 355180 . - . ID=Physo115405.2;Parent=Physo115405;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 355192 355702 . - 0 ID=Physo115405;Parent=Physo115405;rank=1 scaffold_26 . exon 355192 355702 . - . ID=Physo115405.1;Parent=Physo115405;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 348995 349539 . + . ID=Physo133477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260083;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 348995 349539 . + . ID=Physo133477;Parent=Physo133477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 348995 349460 . + 0 ID=Physo133477;Parent=Physo133477;rank=1 scaffold_26 . exon 348995 349460 . + . ID=Physo133477.1;Parent=Physo133477;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 349496 349539 . + 0 ID=Physo133477;Parent=Physo133477;rank=2 scaffold_26 . exon 349496 349539 . + . ID=Physo133477.2;Parent=Physo133477;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 350857 351513 . - . ID=Physo133478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260084;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 350857 351513 . - . ID=Physo133478;Parent=Physo133478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 350857 351513 . - 0 ID=Physo133478;Parent=Physo133478;rank=1 scaffold_26 . exon 350857 351513 . - . ID=Physo133478.1;Parent=Physo133478;constitutive=1;rank=1 scaffold_26 . repeat_region 359791 359845 . ? . description=trf scaffold_26 . repeat_region 360374 360425 . ? . description=trf scaffold_26 . repeat_region 363306 363440 . - . description=GypsyPi-1c_I-int scaffold_26 . repeat_region 363857 363897 . ? . description=trf scaffold_26 . repeat_region 363948 364027 . - . description=GypsyPi-1c_I-int scaffold_26 ensembl protein_coding_gene 362142 363967 . + . ID=Physo133479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260085;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 362142 363967 . + . ID=Physo133479;Parent=Physo133479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 362142 362873 . + 0 ID=Physo133479;Parent=Physo133479;rank=1 scaffold_26 . exon 362142 362873 . + . ID=Physo133479.1;Parent=Physo133479;constitutive=1;rank=1 scaffold_26 . CDS 362906 363967 . + 0 ID=Physo133479;Parent=Physo133479;rank=2 scaffold_26 . exon 362906 363967 . + . ID=Physo133479.2;Parent=Physo133479;constitutive=1;rank=2 scaffold_26 . repeat_region 369287 369347 . ? . description=dust scaffold_26 . repeat_region 371474 371481 . ? . description=dust scaffold_26 . repeat_region 372475 372491 . ? . description=dust scaffold_26 . biological_region 377273 377273 0.999 + . logic_name=eponine scaffold_26 . biological_region 377483 377488 0.999 + . logic_name=eponine scaffold_26 . biological_region 377525 377527 0.999 + . logic_name=eponine scaffold_26 . repeat_region 378162 378173 . ? . description=dust scaffold_26 . biological_region 378351 378355 0.999 + . logic_name=eponine scaffold_26 . biological_region 378368 378369 0.999 - . logic_name=eponine scaffold_26 . repeat_region 380709 380741 . ? . description=trf scaffold_26 ensembl protein_coding_gene 383916 384898 . + . ID=Physo133480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260086;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 383916 384898 . + . ID=Physo133480;Parent=Physo133480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 383916 384557 . + 0 ID=Physo133480;Parent=Physo133480;rank=1 scaffold_26 . exon 383916 384557 . + . ID=Physo133480.1;Parent=Physo133480;constitutive=1;rank=1 scaffold_26 . CDS 384605 384898 . + 0 ID=Physo133480;Parent=Physo133480;rank=2 scaffold_26 . exon 384605 384898 . + . ID=Physo133480.2;Parent=Physo133480;constitutive=1;rank=2 scaffold_26 . repeat_region 389040 389047 . ? . description=dust scaffold_26 . biological_region 391423 391428 0.999 - . logic_name=eponine scaffold_26 . biological_region 391454 391457 0.999 + . logic_name=eponine scaffold_26 . biological_region 391587 391588 0.999 - . logic_name=eponine scaffold_26 . biological_region 391648 391654 0.999 - . logic_name=eponine scaffold_26 . biological_region 396494 396495 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 390770 391702 . - . ID=Physo133481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260087;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 390770 391702 . - . ID=Physo133481;Parent=Physo133481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 390770 391702 . - . ID=Physo133481.1;Parent=Physo133481;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 390807 391694 . - 0 ID=Physo133481;Parent=Physo133481;rank=1 scaffold_26 ensembl protein_coding_gene 392431 395381 . + . ID=Physo133482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260088;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 392431 395381 . + . ID=Physo133482;Parent=Physo133482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 392431 392829 . + 0 ID=Physo133482;Parent=Physo133482;rank=1 scaffold_26 . exon 392431 392829 . + . ID=Physo133482.1;Parent=Physo133482;constitutive=1;rank=1 scaffold_26 . CDS 392860 395153 . + 0 ID=Physo133482;Parent=Physo133482;rank=2 scaffold_26 . exon 392860 395153 . + . ID=Physo133482.2;Parent=Physo133482;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 395360 395381 . + 0 ID=Physo133482;Parent=Physo133482;rank=3 scaffold_26 . exon 395360 395381 . + . ID=Physo133482.3;Parent=Physo133482;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . repeat_region 398503 398812 . + . description=GypsyPi-1c_LTR scaffold_26 . repeat_region 398813 405648 . + . description=GypsyPi-1c_I-int scaffold_26 . repeat_region 400650 400815 . ? . description=trf scaffold_26 . repeat_region 400794 400924 . ? . description=trf scaffold_26 . repeat_region 400819 400956 . ? . description=trf scaffold_26 . repeat_region 400844 400956 . ? . description=trf scaffold_26 . repeat_region 406217 406533 . + . description=GypsyPi-1c_I-int scaffold_26 . repeat_region 406324 406343 . ? . description=trf scaffold_26 ensembl protein_coding_gene 398900 403864 . + . ID=Physo133483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260089;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 398900 403864 . + . ID=Physo133483;Parent=Physo133483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 398900 399851 . + 0 ID=Physo133483;Parent=Physo133483;rank=1 scaffold_26 . exon 398900 399851 . + . ID=Physo133483.1;Parent=Physo133483;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 400006 401183 . + 0 ID=Physo133483;Parent=Physo133483;rank=2 scaffold_26 . exon 400006 401183 . + . ID=Physo133483.2;Parent=Physo133483;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 401281 403809 . + 0 ID=Physo133483;Parent=Physo133483;rank=3 scaffold_26 . exon 401281 403809 . + . ID=Physo133483.3;Parent=Physo133483;constitutive=1;rank=3 scaffold_26 . CDS 403856 403864 . + 0 ID=Physo133483;Parent=Physo133483;rank=4 scaffold_26 . exon 403856 403864 . + . ID=Physo133483.4;Parent=Physo133483;constitutive=1;rank=4 scaffold_26 ensembl protein_coding_gene 404147 406353 . - . ID=Physo133484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260090;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 404147 406353 . - . ID=Physo133484;Parent=Physo133484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 404147 404487 . - 0 ID=Physo133484;Parent=Physo133484;rank=4 scaffold_26 . exon 404147 404487 . - . ID=Physo133484.4;Parent=Physo133484;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 404514 405127 . - 0 ID=Physo133484;Parent=Physo133484;rank=3 scaffold_26 . exon 404514 405127 . - . ID=Physo133484.3;Parent=Physo133484;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 405151 405313 . - 0 ID=Physo133484;Parent=Physo133484;rank=2 scaffold_26 . exon 405151 405313 . - . ID=Physo133484.2;Parent=Physo133484;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 405459 406353 . - 0 ID=Physo133484;Parent=Physo133484;rank=1 scaffold_26 . exon 405459 406353 . - . ID=Physo133484.1;Parent=Physo133484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 406861 407793 . - . ID=Physo133485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260091;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 406861 407793 . - . ID=Physo133485;Parent=Physo133485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 406861 407793 . - . ID=Physo133485.1;Parent=Physo133485;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 406898 407785 . - 0 ID=Physo133485;Parent=Physo133485;rank=1 scaffold_26 . biological_region 409368 409368 0.999 + . logic_name=eponine scaffold_26 . biological_region 409430 409434 0.999 - . logic_name=eponine scaffold_26 . biological_region 409481 409484 0.999 - . logic_name=eponine scaffold_26 . biological_region 409502 409504 0.999 - . logic_name=eponine scaffold_26 . biological_region 409625 409625 0.999 + . logic_name=eponine scaffold_26 . biological_region 409659 409660 0.999 + . logic_name=eponine scaffold_26 . biological_region 409991 409998 0.999 + . logic_name=eponine scaffold_26 . repeat_region 410756 412270 . ? . description=dust scaffold_26 . biological_region 413632 413639 0.999 - . logic_name=eponine scaffold_26 . biological_region 413970 413971 0.999 - . logic_name=eponine scaffold_26 . biological_region 414005 414005 0.999 - . logic_name=eponine scaffold_26 . biological_region 414126 414128 0.999 + . logic_name=eponine scaffold_26 . biological_region 414146 414149 0.999 + . logic_name=eponine scaffold_26 . biological_region 414196 414200 0.999 + . logic_name=eponine scaffold_26 . biological_region 416265 416265 0.999 - . logic_name=eponine scaffold_26 . biological_region 416774 416776 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 409242 412471 . - . ID=Physo108707;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260008;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 409242 412471 . - . ID=Physo108707;Parent=Physo108707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 409242 410747 . - 0 ID=Physo108707;Parent=Physo108707;rank=2 scaffold_26 . exon 409242 410747 . - . ID=Physo108707.2;Parent=Physo108707;constitutive=1;rank=2 scaffold_26 . CDS 412346 412471 . - 0 ID=Physo108707;Parent=Physo108707;rank=1 scaffold_26 . exon 412346 412471 . - . ID=Physo108707.1;Parent=Physo108707;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 412725 414462 . + . ID=Physo108708;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260009;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 412725 414462 . + . ID=Physo108708;Parent=Physo108708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 412725 414462 . + . ID=Physo108708.1;Parent=Physo108708;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 412786 414387 . + 0 ID=Physo108708;Parent=Physo108708;rank=1 scaffold_26 ensembl protein_coding_gene 416093 417007 . + . ID=Physo133488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260094;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 416093 417007 . + . ID=Physo133488;Parent=Physo133488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 416093 416306 . + 0 ID=Physo133488;Parent=Physo133488;rank=1 scaffold_26 . exon 416093 416306 . + . ID=Physo133488.1;Parent=Physo133488;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 416343 417007 . + 0 ID=Physo133488;Parent=Physo133488;rank=2 scaffold_26 . exon 416343 417007 . + . ID=Physo133488.2;Parent=Physo133488;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 417216 418882 . + . ID=Physo133489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260095;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 417216 418882 . + . ID=Physo133489;Parent=Physo133489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 417216 417251 . + 0 ID=Physo133489;Parent=Physo133489;rank=1 scaffold_26 . exon 417216 417251 . + . ID=Physo133489.1;Parent=Physo133489;constitutive=1;rank=1 scaffold_26 . CDS 417296 417431 . + 0 ID=Physo133489;Parent=Physo133489;rank=2 scaffold_26 . exon 417296 417431 . + . ID=Physo133489.2;Parent=Physo133489;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 417506 417911 . + 0 ID=Physo133489;Parent=Physo133489;rank=3 scaffold_26 . exon 417506 417911 . + . ID=Physo133489.3;Parent=Physo133489;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_26 . CDS 417998 418067 . + 0 ID=Physo133489;Parent=Physo133489;rank=4 scaffold_26 . exon 417998 418067 . + . ID=Physo133489.4;Parent=Physo133489;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 418135 418230 . + 0 ID=Physo133489;Parent=Physo133489;rank=5 scaffold_26 . exon 418135 418230 . + . ID=Physo133489.5;Parent=Physo133489;constitutive=1;rank=5 scaffold_26 . CDS 418306 418401 . + 0 ID=Physo133489;Parent=Physo133489;rank=6 scaffold_26 . exon 418306 418401 . + . ID=Physo133489.6;Parent=Physo133489;constitutive=1;rank=6 scaffold_26 . CDS 418617 418802 . + 0 ID=Physo133489;Parent=Physo133489;rank=7 scaffold_26 . exon 418617 418882 . + . ID=Physo133489.7;Parent=Physo133489;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_26 ensembl protein_coding_gene 418986 422730 . - . ID=Physo133490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260096;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 418986 422730 . - . ID=Physo133490;Parent=Physo133490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 418986 420274 . - 0 ID=Physo133490;Parent=Physo133490;rank=6 scaffold_26 . exon 418986 420274 . - . ID=Physo133490.6;Parent=Physo133490;constitutive=1;ensembl_phase=1;rank=6 scaffold_26 . CDS 420404 420937 . - 0 ID=Physo133490;Parent=Physo133490;rank=5 scaffold_26 . exon 420404 420937 . - . ID=Physo133490.5;Parent=Physo133490;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_26 . CDS 421008 421143 . - 0 ID=Physo133490;Parent=Physo133490;rank=4 scaffold_26 . exon 421008 421143 . - . ID=Physo133490.4;Parent=Physo133490;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_26 . CDS 421213 421633 . - 0 ID=Physo133490;Parent=Physo133490;rank=3 scaffold_26 . exon 421213 421633 . - . ID=Physo133490.3;Parent=Physo133490;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 421708 422429 . - 0 ID=Physo133490;Parent=Physo133490;rank=2 scaffold_26 . exon 421708 422429 . - . ID=Physo133490.2;Parent=Physo133490;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_26 . CDS 422503 422730 . - 0 ID=Physo133490;Parent=Physo133490;rank=1 scaffold_26 . exon 422503 422730 . - . ID=Physo133490.1;Parent=Physo133490;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 428164 428953 . - . ID=Physo133491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260097;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 428164 428953 . - . ID=Physo133491;Parent=Physo133491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 428164 428823 . - 0 ID=Physo133491;Parent=Physo133491;rank=2 scaffold_26 . exon 428164 428823 . - . ID=Physo133491.2;Parent=Physo133491;constitutive=1;rank=2 scaffold_26 . CDS 428903 428953 . - 0 ID=Physo133491;Parent=Physo133491;rank=1 scaffold_26 . biological_region 431334 431335 0.999 - . logic_name=eponine scaffold_26 . biological_region 432757 432759 0.999 + . logic_name=eponine scaffold_26 . repeat_region 432788 432846 . ? . description=dust scaffold_26 . biological_region 432800 432805 0.999 + . logic_name=eponine scaffold_26 . biological_region 432813 432815 0.999 + . logic_name=eponine scaffold_26 . biological_region 432821 432823 0.999 - . logic_name=eponine scaffold_26 . biological_region 432849 432850 0.999 + . logic_name=eponine scaffold_26 . biological_region 432862 432866 0.999 + . logic_name=eponine scaffold_26 . biological_region 432867 432876 0.999 - . logic_name=eponine scaffold_26 . biological_region 432874 432882 0.999 + . logic_name=eponine scaffold_26 . biological_region 432890 432897 0.999 + . logic_name=eponine scaffold_26 . biological_region 432896 432905 0.999 - . logic_name=eponine scaffold_26 . biological_region 433547 433550 0.999 - . logic_name=eponine scaffold_26 . biological_region 433609 433609 0.999 - . logic_name=eponine scaffold_26 . biological_region 433784 433788 0.999 + . logic_name=eponine scaffold_26 . biological_region 434085 434088 0.999 - . logic_name=eponine scaffold_26 . biological_region 435209 435213 0.999 - . logic_name=eponine scaffold_26 . biological_region 435230 435231 0.999 + . logic_name=eponine scaffold_26 . biological_region 435285 435288 0.999 - . logic_name=eponine scaffold_26 . biological_region 436130 436133 0.999 - . logic_name=eponine scaffold_26 . repeat_region 436313 436335 . ? . description=trf scaffold_26 . biological_region 436430 436432 0.999 - . logic_name=eponine scaffold_26 . biological_region 436631 436635 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 433439 435433 . + . ID=Physo108709;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260010;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 433439 435433 . + . ID=Physo108709;Parent=Physo108709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 433439 435181 . + 0 ID=Physo108709;Parent=Physo108709;rank=1 scaffold_26 . exon 433439 435181 . + . ID=Physo108709.1;Parent=Physo108709;constitutive=1;rank=1 scaffold_26 . CDS 435206 435433 . + 0 ID=Physo108709;Parent=Physo108709;rank=2 scaffold_26 . exon 435206 435433 . + . ID=Physo108709.2;Parent=Physo108709;constitutive=1;rank=2 scaffold_26 . exon 428903 428953 . - . ID=Physo133491.1;Parent=Physo133491;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 429290 432991 . - . ID=Physo133492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260098;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 429290 432991 . - . ID=Physo133492;Parent=Physo133492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 429290 432991 . - 0 ID=Physo133492;Parent=Physo133492;rank=1 scaffold_26 . exon 429290 432991 . - . ID=Physo133492.1;Parent=Physo133492;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 436344 437748 . + . ID=Physo133494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260100;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 436344 437748 . + . ID=Physo133494;Parent=Physo133494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 436344 437405 . + 0 ID=Physo133494;Parent=Physo133494;rank=1 scaffold_26 . exon 436344 437405 . + . ID=Physo133494.1;Parent=Physo133494;constitutive=1;rank=1 scaffold_26 . CDS 437502 437564 . + 0 ID=Physo133494;Parent=Physo133494;rank=2 scaffold_26 . exon 437502 437564 . + . ID=Physo133494.2;Parent=Physo133494;constitutive=1;rank=2 scaffold_26 . CDS 437731 437748 . + 0 ID=Physo133494;Parent=Physo133494;rank=3 scaffold_26 . exon 437731 437748 . + . ID=Physo133494.3;Parent=Physo133494;constitutive=1;rank=3 scaffold_26 ensembl protein_coding_gene 438741 441518 . - . ID=Physo133495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260101;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 438741 441518 . - . ID=Physo133495;Parent=Physo133495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 438741 441518 . - 0 ID=Physo133495;Parent=Physo133495;rank=1 scaffold_26 . exon 438741 441518 . - . ID=Physo133495.1;Parent=Physo133495;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 442853 444732 . + . ID=Physo133496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260102;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 442853 444732 . + . ID=Physo133496;Parent=Physo133496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 442853 443770 . + 0 ID=Physo133496;Parent=Physo133496;rank=1 scaffold_26 . exon 442853 443770 . + . ID=Physo133496.1;Parent=Physo133496;constitutive=1;rank=1 scaffold_26 . CDS 444517 444732 . + 0 ID=Physo133496;Parent=Physo133496;rank=2 scaffold_26 . exon 444517 444732 . + . ID=Physo133496.2;Parent=Physo133496;constitutive=1;rank=2 scaffold_26 . repeat_region 449972 449991 . ? . description=trf scaffold_26 . biological_region 450131 450131 0.999 + . logic_name=eponine scaffold_26 . biological_region 450909 450911 0.999 + . logic_name=eponine scaffold_26 . biological_region 451486 451492 0.999 + . logic_name=eponine scaffold_26 . biological_region 453854 453855 0.999 - . logic_name=eponine scaffold_26 . repeat_region 454340 454347 . ? . description=dust scaffold_26 . repeat_region 455125 455168 . + . description=(CTA)n scaffold_26 . repeat_region 455132 455168 . ? . description=dust scaffold_26 . repeat_region 455132 455168 . ? . description=trf scaffold_26 . repeat_region 455134 455169 . ? . description=trf scaffold_26 . repeat_region 456904 456949 . ? . description=trf scaffold_26 . repeat_region 456904 456949 . ? . description=trf scaffold_26 . repeat_region 456904 456951 . ? . description=dust scaffold_26 . repeat_region 456906 456952 . ? . description=trf scaffold_26 ensembl protein_coding_gene 448463 450153 . - . ID=Physo133497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260103;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 448463 450153 . - . ID=Physo133497;Parent=Physo133497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 448463 448581 . - 0 ID=Physo133497;Parent=Physo133497;rank=2 scaffold_26 . exon 448463 448581 . - . ID=Physo133497.2;Parent=Physo133497;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 448731 450153 . - 0 ID=Physo133497;Parent=Physo133497;rank=1 scaffold_26 . exon 448731 450153 . - . ID=Physo133497.1;Parent=Physo133497;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 450825 453838 . - . ID=Physo133498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260104;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 450825 453838 . - . ID=Physo133498;Parent=Physo133498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 450825 450969 . - 0 ID=Physo133498;Parent=Physo133498;rank=5 scaffold_26 . exon 450825 450969 . - . ID=Physo133498.5;Parent=Physo133498;constitutive=1;ensembl_phase=2;rank=5 scaffold_26 . CDS 451036 451094 . - 0 ID=Physo133498;Parent=Physo133498;rank=4 scaffold_26 . exon 451036 451094 . - . ID=Physo133498.4;Parent=Physo133498;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_26 . CDS 451160 451279 . - 0 ID=Physo133498;Parent=Physo133498;rank=3 scaffold_26 . exon 451160 451279 . - . ID=Physo133498.3;Parent=Physo133498;constitutive=1;rank=3 scaffold_26 . CDS 451571 451731 . - 0 ID=Physo133498;Parent=Physo133498;rank=2 scaffold_26 . exon 451571 451731 . - . ID=Physo133498.2;Parent=Physo133498;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 451876 453838 . - 0 ID=Physo133498;Parent=Physo133498;rank=1 scaffold_26 . exon 451876 453838 . - . ID=Physo133498.1;Parent=Physo133498;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 456516 460341 . + . ID=Physo156756;biotype=protein_coding;external_name=C_scaffold_26000040;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 456516 460341 . + . ID=Physo156756;Parent=Physo156756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 456516 457335 . + 0 ID=Physo156756;Parent=Physo156756;rank=1 scaffold_26 . exon 456516 457335 . + . ID=Physo156756.1;Parent=Physo156756;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 457423 457599 . + 0 ID=Physo156756;Parent=Physo156756;rank=2 scaffold_26 . exon 457423 457599 . + . ID=Physo156756.2;Parent=Physo156756;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 457891 458139 . + 0 ID=Physo156756;Parent=Physo156756;rank=3 scaffold_26 . exon 457891 458139 . + . ID=Physo156756.3;Parent=Physo156756;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 458524 458817 . + 0 ID=Physo156756;Parent=Physo156756;rank=4 scaffold_26 . CDS 459199 460190 . + 0 ID=Physo156756;Parent=Physo156756;rank=5 scaffold_26 . CDS 460231 460341 . + 0 ID=Physo156756;Parent=Physo156756;rank=6 scaffold_26 ensembl protein_coding_gene 463116 464212 . - . ID=Physo108710;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260011;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 463116 464212 . - . ID=Physo108710;Parent=Physo108710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 463116 463348 . - . ID=Physo108710.5;Parent=Physo108710;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_26 . CDS 463194 463348 . - 0 ID=Physo108710;Parent=Physo108710;rank=5 scaffold_26 . CDS 463425 463493 . - 0 ID=Physo108710;Parent=Physo108710;rank=4 scaffold_26 . exon 463425 463493 . - . ID=Physo108710.4;Parent=Physo108710;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 463575 463862 . - 0 ID=Physo108710;Parent=Physo108710;rank=3 scaffold_26 . exon 463575 463862 . - . ID=Physo108710.3;Parent=Physo108710;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 463937 464076 . - 0 ID=Physo108710;Parent=Physo108710;rank=2 scaffold_26 . exon 463937 464076 . - . ID=Physo108710.2;Parent=Physo108710;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 464167 464210 . - 0 ID=Physo108710;Parent=Physo108710;rank=1 scaffold_26 . exon 464167 464212 . - . ID=Physo108710.1;Parent=Physo108710;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 464606 465296 . + . ID=Physo133502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260108;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 464606 465296 . + . ID=Physo133502;Parent=Physo133502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 464606 464731 . + 0 ID=Physo133502;Parent=Physo133502;rank=1 scaffold_26 . exon 464606 464731 . + . ID=Physo133502.1;Parent=Physo133502;constitutive=1;rank=1 scaffold_26 . CDS 464818 464988 . + 0 ID=Physo133502;Parent=Physo133502;rank=2 scaffold_26 . exon 464818 464988 . + . ID=Physo133502.2;Parent=Physo133502;constitutive=1;rank=2 scaffold_26 . CDS 465064 465179 . + 0 ID=Physo133502;Parent=Physo133502;rank=3 scaffold_26 . exon 465064 465179 . + . ID=Physo133502.3;Parent=Physo133502;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 465233 465296 . + 0 ID=Physo133502;Parent=Physo133502;rank=4 scaffold_26 . exon 465233 465296 . + . ID=Physo133502.4;Parent=Physo133502;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . exon 458524 458817 . + . ID=Physo156756.4;Parent=Physo156756;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_26 . exon 459199 460190 . + . ID=Physo156756.5;Parent=Physo156756;constitutive=1;ensembl_phase=1;rank=5 scaffold_26 . exon 460231 460341 . + . ID=Physo156756.6;Parent=Physo156756;constitutive=1;rank=6 scaffold_26 ensembl protein_coding_gene 460718 462466 . - . ID=Physo156757;biotype=protein_coding;external_name=C_scaffold_26000041;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 460718 462466 . - . ID=Physo156757;Parent=Physo156757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 460718 460889 . - 0 ID=Physo156757;Parent=Physo156757;rank=6 scaffold_26 . exon 460718 460889 . - . ID=Physo156757.6;Parent=Physo156757;constitutive=1;ensembl_phase=2;rank=6 scaffold_26 . CDS 460980 461095 . - 0 ID=Physo156757;Parent=Physo156757;rank=5 scaffold_26 . exon 460980 461095 . - . ID=Physo156757.5;Parent=Physo156757;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_26 . CDS 461300 461698 . - 0 ID=Physo156757;Parent=Physo156757;rank=4 scaffold_26 . exon 461300 461698 . - . ID=Physo156757.4;Parent=Physo156757;constitutive=1;rank=4 scaffold_26 . CDS 461766 461805 . - 0 ID=Physo156757;Parent=Physo156757;rank=3 scaffold_26 . exon 461766 461805 . - . ID=Physo156757.3;Parent=Physo156757;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 461890 461959 . - 0 ID=Physo156757;Parent=Physo156757;rank=2 scaffold_26 . exon 461890 461959 . - . ID=Physo156757.2;Parent=Physo156757;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 462025 462466 . - 0 ID=Physo156757;Parent=Physo156757;rank=1 scaffold_26 . exon 462025 462466 . - . ID=Physo156757.1;Parent=Physo156757;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . biological_region 471658 471660 0.999 + . logic_name=eponine scaffold_26 . biological_region 471775 471776 0.999 - . logic_name=eponine scaffold_26 . biological_region 472175 472175 0.999 + . logic_name=eponine scaffold_26 . biological_region 472270 472273 0.999 - . logic_name=eponine scaffold_26 . biological_region 472347 472353 0.999 - . logic_name=eponine scaffold_26 . biological_region 472436 472439 0.999 - . logic_name=eponine scaffold_26 . repeat_region 475784 475911 . + . description=(CAG)n scaffold_26 . repeat_region 475812 475862 . ? . description=trf scaffold_26 . repeat_region 475812 475870 . ? . description=trf scaffold_26 . repeat_region 475824 475872 . ? . description=trf scaffold_26 . biological_region 477573 477583 0.999 + . logic_name=eponine scaffold_26 . biological_region 477657 477660 0.999 + . logic_name=eponine scaffold_26 . biological_region 477658 477664 0.999 - . logic_name=eponine scaffold_26 . biological_region 477678 477683 0.999 - . logic_name=eponine scaffold_26 . biological_region 477732 477736 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 469802 472579 . - . ID=Physo133503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260109;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 469802 472579 . - . ID=Physo133503;Parent=Physo133503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 469802 472579 . - 0 ID=Physo133503;Parent=Physo133503;rank=1 scaffold_26 . exon 469802 472579 . - . ID=Physo133503.1;Parent=Physo133503;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 477592 481447 . + . ID=Physo133504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260110;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 477592 481447 . + . ID=Physo133504;Parent=Physo133504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 477592 481323 . + 0 ID=Physo133504;Parent=Physo133504;rank=1 scaffold_26 . exon 477592 481447 . + . ID=Physo133504.1;Parent=Physo133504;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 . repeat_region 485808 485839 . ? . description=dust scaffold_26 ensembl protein_coding_gene 487575 487979 . + . ID=Physo115431;biotype=protein_coding;external_name=estExt_Genewise1.C_260072;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 487575 487979 . + . ID=Physo115431;Parent=Physo115431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 487575 487979 . + . ID=Physo115431.1;Parent=Physo115431;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 487596 487901 . + 0 ID=Physo115431;Parent=Physo115431;rank=1 scaffold_26 ensembl protein_coding_gene 482360 483217 . - . ID=Physo133505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260111;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 482360 483217 . - . ID=Physo133505;Parent=Physo133505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 482360 483217 . - 0 ID=Physo133505;Parent=Physo133505;rank=1 scaffold_26 . exon 482360 483217 . - . ID=Physo133505.1;Parent=Physo133505;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 484663 486293 . + . ID=Physo133506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260112;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 484663 486293 . + . ID=Physo133506;Parent=Physo133506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 484663 485276 . + 0 ID=Physo133506;Parent=Physo133506;rank=1 scaffold_26 . exon 484663 485276 . + . ID=Physo133506.1;Parent=Physo133506;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 485410 486176 . + 0 ID=Physo133506;Parent=Physo133506;rank=2 scaffold_26 . exon 485410 486176 . + . ID=Physo133506.2;Parent=Physo133506;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 486253 486293 . + 0 ID=Physo133506;Parent=Physo133506;rank=3 scaffold_26 . exon 486253 486293 . + . ID=Physo133506.3;Parent=Physo133506;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . repeat_region 489957 490016 . ? . description=trf scaffold_26 . repeat_region 490250 490287 . ? . description=trf scaffold_26 . repeat_region 491799 491858 . ? . description=trf scaffold_26 . biological_region 492994 492994 0.999 + . logic_name=eponine scaffold_26 . biological_region 494587 494589 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 490944 494656 . - . ID=Physo133507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260113;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 490944 494656 . - . ID=Physo133507;Parent=Physo133507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 490944 491033 . - 0 ID=Physo133507;Parent=Physo133507;rank=3 scaffold_26 . exon 490944 491033 . - . ID=Physo133507.3;Parent=Physo133507;constitutive=1;rank=3 scaffold_26 . CDS 491072 494042 . - 0 ID=Physo133507;Parent=Physo133507;rank=2 scaffold_26 . exon 491072 494042 . - . ID=Physo133507.2;Parent=Physo133507;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 494175 494656 . - 0 ID=Physo133507;Parent=Physo133507;rank=1 scaffold_26 . exon 494175 494656 . - . ID=Physo133507.1;Parent=Physo133507;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . repeat_region 498076 498301 . + . description=Polinton-1_PI scaffold_26 . repeat_region 501107 501221 . + . description=Polinton-1_PI scaffold_26 ensembl protein_coding_gene 505592 509530 . + . ID=Physo133508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260114;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 505592 509530 . + . ID=Physo133508;Parent=Physo133508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 505592 505954 . + 0 ID=Physo133508;Parent=Physo133508;rank=1 scaffold_26 . exon 505592 505954 . + . ID=Physo133508.1;Parent=Physo133508;constitutive=1;rank=1 scaffold_26 . CDS 505985 506732 . + 0 ID=Physo133508;Parent=Physo133508;rank=2 scaffold_26 . exon 505985 506732 . + . ID=Physo133508.2;Parent=Physo133508;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 506923 508796 . + 0 ID=Physo133508;Parent=Physo133508;rank=3 scaffold_26 . exon 506923 508796 . + . ID=Physo133508.3;Parent=Physo133508;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 508883 509530 . + 0 ID=Physo133508;Parent=Physo133508;rank=4 scaffold_26 . biological_region 509138 509143 0.999 - . logic_name=eponine scaffold_26 . repeat_region 510604 510639 . ? . description=trf scaffold_26 . biological_region 512757 512759 0.999 - . logic_name=eponine scaffold_26 . repeat_region 513806 513867 . ? . description=dust scaffold_26 . repeat_region 513807 513874 . ? . description=trf scaffold_26 . repeat_region 513998 514022 . ? . description=trf scaffold_26 . biological_region 514799 514799 0.999 + . logic_name=eponine scaffold_26 . biological_region 514816 514824 0.999 + . logic_name=eponine scaffold_26 . repeat_region 515369 515377 . ? . description=dust scaffold_26 . biological_region 515502 515505 0.999 + . logic_name=eponine scaffold_26 . biological_region 515556 515562 0.999 + . logic_name=eponine scaffold_26 . biological_region 515579 515582 0.999 - . logic_name=eponine scaffold_26 . exon 508883 509530 . + . ID=Physo133508.4;Parent=Physo133508;constitutive=1;rank=4 scaffold_26 ensembl protein_coding_gene 511979 518752 . - . ID=Physo156758;biotype=protein_coding;external_name=C_scaffold_26000042;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 511979 518752 . - . ID=Physo156758;Parent=Physo156758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 511979 512432 . - 0 ID=Physo156758;Parent=Physo156758;rank=15 scaffold_26 . exon 511979 512432 . - . ID=Physo156758.15;Parent=Physo156758;constitutive=1;ensembl_phase=2;rank=15 scaffold_26 . CDS 512466 513429 . - 0 ID=Physo156758;Parent=Physo156758;rank=14 scaffold_26 . exon 512466 513429 . - . ID=Physo156758.14;Parent=Physo156758;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=14 scaffold_26 . CDS 513808 513892 . - 0 ID=Physo156758;Parent=Physo156758;rank=13 scaffold_26 . exon 513808 513892 . - . ID=Physo156758.13;Parent=Physo156758;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_26 . CDS 513975 514964 . - 0 ID=Physo156758;Parent=Physo156758;rank=12 scaffold_26 . exon 513975 514964 . - . ID=Physo156758.12;Parent=Physo156758;constitutive=1;rank=12 scaffold_26 . CDS 515110 515247 . - 0 ID=Physo156758;Parent=Physo156758;rank=11 scaffold_26 . exon 515110 515247 . - . ID=Physo156758.11;Parent=Physo156758;constitutive=1;rank=11 scaffold_26 . CDS 515396 515661 . - 0 ID=Physo156758;Parent=Physo156758;rank=10 scaffold_26 . exon 515396 515661 . - . ID=Physo156758.10;Parent=Physo156758;constitutive=1;ensembl_phase=1;rank=10 scaffold_26 . CDS 516036 516177 . - 0 ID=Physo156758;Parent=Physo156758;rank=9 scaffold_26 . exon 516036 516177 . - . ID=Physo156758.9;Parent=Physo156758;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_26 . CDS 516205 516760 . - 0 ID=Physo156758;Parent=Physo156758;rank=8 scaffold_26 . exon 516205 516760 . - . ID=Physo156758.8;Parent=Physo156758;constitutive=1;ensembl_phase=2;rank=8 scaffold_26 . CDS 516902 517091 . - 0 ID=Physo156758;Parent=Physo156758;rank=7 scaffold_26 . exon 516902 517091 . - . ID=Physo156758.7;Parent=Physo156758;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_26 . CDS 517152 517262 . - 0 ID=Physo156758;Parent=Physo156758;rank=6 scaffold_26 . exon 517152 517262 . - . ID=Physo156758.6;Parent=Physo156758;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_26 . CDS 517400 517430 . - 0 ID=Physo156758;Parent=Physo156758;rank=5 scaffold_26 . exon 517400 517430 . - . ID=Physo156758.5;Parent=Physo156758;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_26 . CDS 517522 517608 . - 0 ID=Physo156758;Parent=Physo156758;rank=4 scaffold_26 . exon 517522 517608 . - . ID=Physo156758.4;Parent=Physo156758;constitutive=1;rank=4 scaffold_26 . CDS 517691 518020 . - 0 ID=Physo156758;Parent=Physo156758;rank=3 scaffold_26 . exon 517691 518020 . - . ID=Physo156758.3;Parent=Physo156758;constitutive=1;rank=3 scaffold_26 . CDS 518087 518230 . - 0 ID=Physo156758;Parent=Physo156758;rank=2 scaffold_26 . CDS 518294 518752 . - 0 ID=Physo156758;Parent=Physo156758;rank=1 scaffold_26 ensembl protein_coding_gene 522698 524575 . - . ID=Physo133511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260117;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 522698 524575 . - . ID=Physo133511;Parent=Physo133511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 522698 524575 . - 0 ID=Physo133511;Parent=Physo133511;rank=1 scaffold_26 . exon 522698 524575 . - . ID=Physo133511.1;Parent=Physo133511;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 525580 527646 . + . ID=Physo133512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260118;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 525580 527646 . + . ID=Physo133512;Parent=Physo133512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 525580 527496 . + 0 ID=Physo133512;Parent=Physo133512;rank=1 scaffold_26 . exon 525580 527646 . + . ID=Physo133512.1;Parent=Physo133512;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 . exon 518087 518230 . - . ID=Physo156758.2;Parent=Physo156758;constitutive=1;rank=2 scaffold_26 . exon 518294 518752 . - . ID=Physo156758.1;Parent=Physo156758;constitutive=1;rank=1 scaffold_26 . biological_region 533031 533033 0.999 + . logic_name=eponine scaffold_26 . biological_region 533670 533672 0.999 - . logic_name=eponine scaffold_26 . biological_region 534997 535000 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 532363 534020 . - . ID=Physo133513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260119;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 532363 534020 . - . ID=Physo133513;Parent=Physo133513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 532363 532416 . - 0 ID=Physo133513;Parent=Physo133513;rank=5 scaffold_26 . exon 532363 532416 . - . ID=Physo133513.5;Parent=Physo133513;constitutive=1;rank=5 scaffold_26 . CDS 532482 533193 . - 0 ID=Physo133513;Parent=Physo133513;rank=4 scaffold_26 . exon 532482 533193 . - . ID=Physo133513.4;Parent=Physo133513;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 533257 533468 . - 0 ID=Physo133513;Parent=Physo133513;rank=3 scaffold_26 . exon 533257 533468 . - . ID=Physo133513.3;Parent=Physo133513;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 533578 533766 . - 0 ID=Physo133513;Parent=Physo133513;rank=2 scaffold_26 . exon 533578 533766 . - . ID=Physo133513.2;Parent=Physo133513;constitutive=1;rank=2 scaffold_26 . CDS 533856 534020 . - 0 ID=Physo133513;Parent=Physo133513;rank=1 scaffold_26 . exon 533856 534020 . - . ID=Physo133513.1;Parent=Physo133513;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 534641 535279 . + . ID=Physo133514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260120;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 534641 535279 . + . ID=Physo133514;Parent=Physo133514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 534641 535279 . + 0 ID=Physo133514;Parent=Physo133514;rank=1 scaffold_26 . exon 534641 535279 . + . ID=Physo133514.1;Parent=Physo133514;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 535420 537276 . - . ID=Physo133515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260121;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 535420 537276 . - . ID=Physo133515;Parent=Physo133515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 535420 537276 . - 0 ID=Physo133515;Parent=Physo133515;rank=1 scaffold_26 . exon 535420 537276 . - . ID=Physo133515.1;Parent=Physo133515;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 537705 540280 . + . ID=Physo133516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260122;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 537705 540280 . + . ID=Physo133516;Parent=Physo133516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 537705 539552 . + 0 ID=Physo133516;Parent=Physo133516;rank=1 scaffold_26 . exon 537705 539552 . + . ID=Physo133516.1;Parent=Physo133516;constitutive=1;rank=1 scaffold_26 . CDS 540152 540280 . + 0 ID=Physo133516;Parent=Physo133516;rank=2 scaffold_26 . repeat_region 539587 539636 . ? . description=dust scaffold_26 . exon 540152 540280 . + . ID=Physo133516.2;Parent=Physo133516;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 540949 541587 . + . ID=Physo133517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260123;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 540949 541587 . + . ID=Physo133517;Parent=Physo133517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 540949 541587 . + 0 ID=Physo133517;Parent=Physo133517;rank=1 scaffold_26 . exon 540949 541587 . + . ID=Physo133517.1;Parent=Physo133517;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 541728 543584 . - . ID=Physo133518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260124;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 541728 543584 . - . ID=Physo133518;Parent=Physo133518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 541728 543584 . - 0 ID=Physo133518;Parent=Physo133518;rank=1 scaffold_26 . exon 541728 543584 . - . ID=Physo133518.1;Parent=Physo133518;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 544013 548356 . + . ID=Physo133519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260125;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 544013 548356 . + . ID=Physo133519;Parent=Physo133519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 544013 548356 . + 0 ID=Physo133519;Parent=Physo133519;rank=1 scaffold_26 . exon 544013 548356 . + . ID=Physo133519.1;Parent=Physo133519;constitutive=1;rank=1 scaffold_26 . repeat_region 549810 549925 . + . description=Gypsy-1-LTR_PI scaffold_26 . biological_region 554906 554911 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 551108 551725 . + . ID=Physo133520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260126;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 551108 551725 . + . ID=Physo133520;Parent=Physo133520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 551108 551725 . + 0 ID=Physo133520;Parent=Physo133520;rank=1 scaffold_26 . exon 551108 551725 . + . ID=Physo133520.1;Parent=Physo133520;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 553714 554932 . - . ID=Physo133521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260127;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 553714 554932 . - . ID=Physo133521;Parent=Physo133521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 553714 553950 . - 0 ID=Physo133521;Parent=Physo133521;rank=3 scaffold_26 . exon 553714 553950 . - . ID=Physo133521.3;Parent=Physo133521;constitutive=1;rank=3 scaffold_26 . CDS 553971 554789 . - 0 ID=Physo133521;Parent=Physo133521;rank=2 scaffold_26 . exon 553971 554789 . - . ID=Physo133521.2;Parent=Physo133521;constitutive=1;rank=2 scaffold_26 . CDS 554813 554932 . - 0 ID=Physo133521;Parent=Physo133521;rank=1 scaffold_26 . exon 554813 554932 . - . ID=Physo133521.1;Parent=Physo133521;constitutive=1;rank=1 scaffold_26 . repeat_region 558016 558023 . ? . description=dust scaffold_26 . repeat_region 558098 558105 . ? . description=dust scaffold_26 . repeat_region 558501 558508 . ? . description=dust scaffold_26 . repeat_region 560788 560834 . ? . description=trf scaffold_26 . repeat_region 560798 560849 . ? . description=trf scaffold_26 . repeat_region 561174 561199 . ? . description=trf scaffold_26 . repeat_region 561625 561656 . ? . description=trf scaffold_26 . repeat_region 562888 562982 . + . description=(CGA)n scaffold_26 . repeat_region 562893 562976 . ? . description=trf scaffold_26 . repeat_region 562893 562976 . ? . description=trf scaffold_26 . repeat_region 562897 562977 . ? . description=trf scaffold_26 . repeat_region 562897 562977 . ? . description=trf scaffold_26 . repeat_region 562910 562970 . ? . description=dust scaffold_26 . repeat_region 562924 562970 . ? . description=trf scaffold_26 . repeat_region 562930 562976 . ? . description=trf scaffold_26 . repeat_region 563035 563063 . ? . description=trf scaffold_26 . repeat_region 565439 565457 . ? . description=dust scaffold_26 . repeat_region 565844 565863 . ? . description=dust scaffold_26 . repeat_region 565844 565863 . ? . description=trf scaffold_26 ensembl protein_coding_gene 559999 561144 . - . ID=Physo133522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260128;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 559999 561144 . - . ID=Physo133522;Parent=Physo133522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 559999 560088 . - . ID=Physo133522.7;Parent=Physo133522;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_26 . CDS 560011 560088 . - 0 ID=Physo133522;Parent=Physo133522;rank=7 scaffold_26 . CDS 560163 560252 . - 0 ID=Physo133522;Parent=Physo133522;rank=6 scaffold_26 . exon 560163 560252 . - . ID=Physo133522.6;Parent=Physo133522;constitutive=1;rank=6 scaffold_26 . CDS 560324 560398 . - 0 ID=Physo133522;Parent=Physo133522;rank=5 scaffold_26 . exon 560324 560398 . - . ID=Physo133522.5;Parent=Physo133522;constitutive=1;rank=5 scaffold_26 . CDS 560477 560555 . - 0 ID=Physo133522;Parent=Physo133522;rank=4 scaffold_26 . exon 560477 560555 . - . ID=Physo133522.4;Parent=Physo133522;constitutive=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 560624 560700 . - 0 ID=Physo133522;Parent=Physo133522;rank=3 scaffold_26 . exon 560624 560700 . - . ID=Physo133522.3;Parent=Physo133522;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_26 . CDS 560773 560873 . - 0 ID=Physo133522;Parent=Physo133522;rank=2 scaffold_26 . exon 560773 560873 . - . ID=Physo133522.2;Parent=Physo133522;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 560940 561144 . - 0 ID=Physo133522;Parent=Physo133522;rank=1 scaffold_26 . exon 560940 561144 . - . ID=Physo133522.1;Parent=Physo133522;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 561418 565029 . + . ID=Physo133523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260129;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 561418 565029 . + . ID=Physo133523;Parent=Physo133523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 561418 565029 . + 0 ID=Physo133523;Parent=Physo133523;rank=1 scaffold_26 . exon 561418 565029 . + . ID=Physo133523.1;Parent=Physo133523;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 565201 566003 . - . ID=Physo133524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260130;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 565201 566003 . - . ID=Physo133524;Parent=Physo133524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 565201 565785 . - 0 ID=Physo133524;Parent=Physo133524;rank=1 scaffold_26 . exon 565201 566003 . - . ID=Physo133524.1;Parent=Physo133524;constitutive=1;ensembl_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 566950 568637 . - . ID=Physo133525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260131;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 566950 568637 . - . ID=Physo133525;Parent=Physo133525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 566950 566969 . - 0 ID=Physo133525;Parent=Physo133525;rank=4 scaffold_26 . exon 566950 566969 . - . ID=Physo133525.4;Parent=Physo133525;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 567031 567967 . - 0 ID=Physo133525;Parent=Physo133525;rank=3 scaffold_26 . exon 567031 567967 . - . ID=Physo133525.3;Parent=Physo133525;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_26 . CDS 567997 568548 . - 0 ID=Physo133525;Parent=Physo133525;rank=2 scaffold_26 . CDS 568575 568637 . - 0 ID=Physo133525;Parent=Physo133525;rank=1 scaffold_26 . biological_region 569978 569980 0.999 + . logic_name=eponine scaffold_26 . biological_region 573401 573405 0.999 - . logic_name=eponine scaffold_26 . biological_region 576745 576745 0.999 + . logic_name=eponine scaffold_26 . biological_region 577548 577552 0.999 - . logic_name=eponine scaffold_26 . exon 567997 568548 . - . ID=Physo133525.2;Parent=Physo133525;constitutive=1;rank=2 scaffold_26 . exon 568575 568637 . - . ID=Physo133525.1;Parent=Physo133525;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 569341 572185 . + . ID=Physo133526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260132;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 569341 572185 . + . ID=Physo133526;Parent=Physo133526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 569341 569426 . + 0 ID=Physo133526;Parent=Physo133526;rank=1 scaffold_26 . exon 569341 569426 . + . ID=Physo133526.1;Parent=Physo133526;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 569549 569627 . + 0 ID=Physo133526;Parent=Physo133526;rank=2 scaffold_26 . exon 569549 569627 . + . ID=Physo133526.2;Parent=Physo133526;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 569769 569784 . + 0 ID=Physo133526;Parent=Physo133526;rank=3 scaffold_26 . exon 569769 569784 . + . ID=Physo133526.3;Parent=Physo133526;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_26 . CDS 569857 570230 . + 0 ID=Physo133526;Parent=Physo133526;rank=4 scaffold_26 . exon 569857 570230 . + . ID=Physo133526.4;Parent=Physo133526;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . CDS 570298 571344 . + 0 ID=Physo133526;Parent=Physo133526;rank=5 scaffold_26 . exon 570298 571344 . + . ID=Physo133526.5;Parent=Physo133526;constitutive=1;rank=5 scaffold_26 . CDS 571463 572185 . + 0 ID=Physo133526;Parent=Physo133526;rank=6 scaffold_26 . exon 571463 572185 . + . ID=Physo133526.6;Parent=Physo133526;constitutive=1;rank=6 scaffold_26 ensembl protein_coding_gene 572267 575052 . - . ID=Physo133527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260133;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 572267 575052 . - . ID=Physo133527;Parent=Physo133527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 572267 572530 . - 0 ID=Physo133527;Parent=Physo133527;rank=3 scaffold_26 . exon 572267 572530 . - . ID=Physo133527.3;Parent=Physo133527;constitutive=1;rank=3 scaffold_26 . CDS 572575 574831 . - 0 ID=Physo133527;Parent=Physo133527;rank=2 scaffold_26 . exon 572575 574831 . - . ID=Physo133527.2;Parent=Physo133527;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 575021 575052 . - 0 ID=Physo133527;Parent=Physo133527;rank=1 scaffold_26 . exon 575021 575052 . - . ID=Physo133527.1;Parent=Physo133527;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 576572 577579 . + . ID=Physo133528;biotype=protein_coding;description=Nuclear LIM factor interactor-interacting protein [Source:UniProtKB/TrEMBL%3BAcc:Q5S7T5];external_name=NIF2;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 576572 577579 . + . ID=Physo133528;Parent=Physo133528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 576572 577579 . + 0 ID=Physo133528;Parent=Physo133528;rank=1 scaffold_26 . exon 576572 577579 . + . ID=Physo133528.1;Parent=Physo133528;constitutive=1;rank=1 scaffold_26 . repeat_region 578600 578639 . ? . description=trf scaffold_26 . repeat_region 578600 578640 . ? . description=dust scaffold_26 . repeat_region 580614 580696 . ? . description=trf scaffold_26 . repeat_region 583329 583369 . ? . description=dust scaffold_26 . repeat_region 583716 583765 . ? . description=dust scaffold_26 . repeat_region 587526 587533 . ? . description=dust scaffold_26 ensembl protein_coding_gene 578767 579777 . + . ID=Physo133529;biotype=protein_coding;description=Nuclear LIM factor interactor-interacting protein [Source:UniProtKB/TrEMBL%3BAcc:Q5S7T4];external_name=NIF3;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 578767 579777 . + . ID=Physo133529;Parent=Physo133529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 578767 579777 . + 0 ID=Physo133529;Parent=Physo133529;rank=1 scaffold_26 . exon 578767 579777 . + . ID=Physo133529.1;Parent=Physo133529;constitutive=1;rank=1 scaffold_26 . biological_region 593578 593581 0.999 - . logic_name=eponine scaffold_26 . biological_region 596844 596845 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 590267 591231 . - . ID=Physo133530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260136;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 590267 591231 . - . ID=Physo133530;Parent=Physo133530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 590267 590271 . - 0 ID=Physo133530;Parent=Physo133530;rank=2 scaffold_26 . exon 590267 590271 . - . ID=Physo133530.2;Parent=Physo133530;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 590301 591231 . - 0 ID=Physo133530;Parent=Physo133530;rank=1 scaffold_26 . exon 590301 591231 . - . ID=Physo133530.1;Parent=Physo133530;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 592600 593610 . + . ID=Physo133531;biotype=protein_coding;description=Nuclear LIM factor interactor-interacting protein [Source:UniProtKB/TrEMBL%3BAcc:Q5S7T6];external_name=NIF1;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 592600 593610 . + . ID=Physo133531;Parent=Physo133531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 592600 593610 . + 0 ID=Physo133531;Parent=Physo133531;rank=1 scaffold_26 . exon 592600 593610 . + . ID=Physo133531.1;Parent=Physo133531;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 594429 595662 . - . ID=Physo133532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260138;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 594429 595662 . - . ID=Physo133532;Parent=Physo133532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 594429 594611 . - 0 ID=Physo133532;Parent=Physo133532;rank=7 scaffold_26 . exon 594429 594611 . - . ID=Physo133532.7;Parent=Physo133532;constitutive=1;rank=7 scaffold_26 . CDS 594681 594753 . - 0 ID=Physo133532;Parent=Physo133532;rank=6 scaffold_26 . exon 594681 594753 . - . ID=Physo133532.6;Parent=Physo133532;constitutive=1;ensembl_phase=2;rank=6 scaffold_26 . CDS 594820 594964 . - 0 ID=Physo133532;Parent=Physo133532;rank=5 scaffold_26 . exon 594820 594964 . - . ID=Physo133532.5;Parent=Physo133532;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_26 . CDS 595037 595107 . - 0 ID=Physo133532;Parent=Physo133532;rank=4 scaffold_26 . exon 595037 595107 . - . ID=Physo133532.4;Parent=Physo133532;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_26 . CDS 595184 595289 . - 0 ID=Physo133532;Parent=Physo133532;rank=3 scaffold_26 . exon 595184 595289 . - . ID=Physo133532.3;Parent=Physo133532;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_26 . CDS 595372 595471 . - 0 ID=Physo133532;Parent=Physo133532;rank=2 scaffold_26 . exon 595372 595471 . - . ID=Physo133532.2;Parent=Physo133532;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_26 . CDS 595585 595662 . - 0 ID=Physo133532;Parent=Physo133532;rank=1 scaffold_26 . exon 595585 595662 . - . ID=Physo133532.1;Parent=Physo133532;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 595810 596406 . - . ID=Physo133533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260139;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 595810 596406 . - . ID=Physo133533;Parent=Physo133533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 595810 596406 . - 0 ID=Physo133533;Parent=Physo133533;rank=1 scaffold_26 . exon 595810 596406 . - . ID=Physo133533.1;Parent=Physo133533;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 597632 598335 . + . ID=Physo133534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260140;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 597632 598335 . + . ID=Physo133534;Parent=Physo133534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 597632 598181 . + 0 ID=Physo133534;Parent=Physo133534;rank=1 scaffold_26 . exon 597632 598181 . + . ID=Physo133534.1;Parent=Physo133534;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 598232 598335 . + 0 ID=Physo133534;Parent=Physo133534;rank=2 scaffold_26 . repeat_region 598366 604688 . ? . description=dust scaffold_26 . repeat_region 605840 605868 . ? . description=trf scaffold_26 . repeat_region 606103 606851 . ? . description=dust scaffold_26 . exon 598232 598335 . + . ID=Physo133534.2;Parent=Physo133534;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 605887 608067 . + . ID=Physo133535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260141;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 605887 608067 . + . ID=Physo133535;Parent=Physo133535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 605887 606093 . + 0 ID=Physo133535;Parent=Physo133535;rank=1 scaffold_26 . exon 605887 606093 . + . ID=Physo133535.1;Parent=Physo133535;constitutive=1;rank=1 scaffold_26 . CDS 606896 608035 . + 0 ID=Physo133535;Parent=Physo133535;rank=2 scaffold_26 . exon 606896 608067 . + . ID=Physo133535.2;Parent=Physo133535;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_26 . biological_region 608906 608909 0.999 - . logic_name=eponine scaffold_26 . biological_region 608913 608916 0.999 - . logic_name=eponine scaffold_26 . biological_region 616900 616903 0.999 - . logic_name=eponine scaffold_26 . biological_region 616907 616910 0.999 - . logic_name=eponine scaffold_26 . repeat_region 618745 619435 . ? . description=trf scaffold_26 . repeat_region 618745 619466 . ? . description=trf scaffold_26 . repeat_region 618991 619082 . ? . description=trf scaffold_26 . repeat_region 619249 619294 . ? . description=trf scaffold_26 . repeat_region 620993 621021 . ? . description=trf scaffold_26 . repeat_region 627085 627119 . ? . description=dust scaffold_26 . repeat_region 627085 627119 . ? . description=trf scaffold_26 ensembl protein_coding_gene 621040 623065 . + . ID=Physo108711;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260012;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 621040 623065 . + . ID=Physo108711;Parent=Physo108711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 621040 623001 . + 0 ID=Physo108711;Parent=Physo108711;rank=1 scaffold_26 . exon 621040 623065 . + . ID=Physo108711.1;Parent=Physo108711;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 624943 626473 . + . ID=Physo108712;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260013;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 624943 626473 . + . ID=Physo108712;Parent=Physo108712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 624943 624983 . + 0 ID=Physo108712;Parent=Physo108712;rank=1 scaffold_26 . exon 624943 624983 . + . ID=Physo108712.1;Parent=Physo108712;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 625054 625163 . + 0 ID=Physo108712;Parent=Physo108712;rank=2 scaffold_26 . exon 625054 625163 . + . ID=Physo108712.2;Parent=Physo108712;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 625230 625333 . + 0 ID=Physo108712;Parent=Physo108712;rank=3 scaffold_26 . exon 625230 625333 . + . ID=Physo108712.3;Parent=Physo108712;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 625408 625452 . + 0 ID=Physo108712;Parent=Physo108712;rank=4 scaffold_26 . exon 625408 625452 . + . ID=Physo108712.4;Parent=Physo108712;constitutive=1;rank=4 scaffold_26 . CDS 625537 625608 . + 0 ID=Physo108712;Parent=Physo108712;rank=5 scaffold_26 . exon 625537 625608 . + . ID=Physo108712.5;Parent=Physo108712;constitutive=1;rank=5 scaffold_26 . CDS 625682 625777 . + 0 ID=Physo108712;Parent=Physo108712;rank=6 scaffold_26 . exon 625682 625777 . + . ID=Physo108712.6;Parent=Physo108712;constitutive=1;rank=6 scaffold_26 . CDS 625870 625976 . + 0 ID=Physo108712;Parent=Physo108712;rank=7 scaffold_26 . exon 625870 625976 . + . ID=Physo108712.7;Parent=Physo108712;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_26 . CDS 626067 626158 . + 0 ID=Physo108712;Parent=Physo108712;rank=8 scaffold_26 . exon 626067 626158 . + . ID=Physo108712.8;Parent=Physo108712;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_26 . CDS 626236 626312 . + 0 ID=Physo108712;Parent=Physo108712;rank=9 scaffold_26 . exon 626236 626473 . + . ID=Physo108712.9;Parent=Physo108712;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=9 scaffold_26 ensembl protein_coding_gene 618943 619963 . - . ID=Physo133536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260142;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 618943 619963 . - . ID=Physo133536;Parent=Physo133536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 618943 618982 . - . ID=Physo133536.2;Parent=Physo133536;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_26 . CDS 618945 618982 . - 0 ID=Physo133536;Parent=Physo133536;rank=2 scaffold_26 . CDS 619144 619963 . - 0 ID=Physo133536;Parent=Physo133536;rank=1 scaffold_26 . exon 619144 619963 . - . ID=Physo133536.1;Parent=Physo133536;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 626634 627533 . - . ID=Physo133539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260145;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 626634 627533 . - . ID=Physo133539;Parent=Physo133539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 626634 627512 . - 0 ID=Physo133539;Parent=Physo133539;rank=1 scaffold_26 . exon 626634 627533 . - . ID=Physo133539.1;Parent=Physo133539;constitutive=1;ensembl_phase=-1;rank=1 scaffold_26 . biological_region 630187 630194 0.999 + . logic_name=eponine scaffold_26 . biological_region 631638 631641 0.999 - . logic_name=eponine scaffold_26 . biological_region 631772 631776 0.999 - . logic_name=eponine scaffold_26 . biological_region 631797 631797 0.999 + . logic_name=eponine scaffold_26 . biological_region 631922 631925 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 629075 631051 . - . ID=Physo108713;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260014;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 629075 631051 . - . ID=Physo108713;Parent=Physo108713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 629075 631051 . - 0 ID=Physo108713;Parent=Physo108713;rank=1 scaffold_26 . exon 629075 631051 . - . ID=Physo108713.1;Parent=Physo108713;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 631358 634969 . + . ID=Physo133541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260147;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 631358 634969 . + . ID=Physo133541;Parent=Physo133541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 631358 634969 . + 0 ID=Physo133541;Parent=Physo133541;rank=1 scaffold_26 . exon 631358 634969 . + . ID=Physo133541.1;Parent=Physo133541;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 635264 638633 . - . ID=Physo133542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260148;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 635264 638633 . - . ID=Physo133542;Parent=Physo133542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 635264 635692 . - 0 ID=Physo133542;Parent=Physo133542;rank=13 scaffold_26 . exon 635264 635692 . - . ID=Physo133542.13;Parent=Physo133542;constitutive=1;rank=13 scaffold_26 . CDS 635764 636012 . - 0 ID=Physo133542;Parent=Physo133542;rank=12 scaffold_26 . exon 635764 636012 . - . ID=Physo133542.12;Parent=Physo133542;constitutive=1;rank=12 scaffold_26 . CDS 636086 636206 . - 0 ID=Physo133542;Parent=Physo133542;rank=11 scaffold_26 . exon 636086 636206 . - . ID=Physo133542.11;Parent=Physo133542;constitutive=1;ensembl_phase=2;rank=11 scaffold_26 . CDS 636274 636335 . - 0 ID=Physo133542;Parent=Physo133542;rank=10 scaffold_26 . exon 636274 636335 . - . ID=Physo133542.10;Parent=Physo133542;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_26 . CDS 636407 636490 . - 0 ID=Physo133542;Parent=Physo133542;rank=9 scaffold_26 . exon 636407 636490 . - . ID=Physo133542.9;Parent=Physo133542;constitutive=1;rank=9 scaffold_26 . CDS 636573 636642 . - 0 ID=Physo133542;Parent=Physo133542;rank=8 scaffold_26 . exon 636573 636642 . - . ID=Physo133542.8;Parent=Physo133542;constitutive=1;ensembl_phase=2;rank=8 scaffold_26 . CDS 636719 637110 . - 0 ID=Physo133542;Parent=Physo133542;rank=7 scaffold_26 . exon 636719 637110 . - . ID=Physo133542.7;Parent=Physo133542;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_26 . CDS 637195 637581 . - 0 ID=Physo133542;Parent=Physo133542;rank=6 scaffold_26 . exon 637195 637581 . - . ID=Physo133542.6;Parent=Physo133542;constitutive=1;rank=6 scaffold_26 . CDS 637661 637777 . - 0 ID=Physo133542;Parent=Physo133542;rank=5 scaffold_26 . CDS 637860 637961 . - 0 ID=Physo133542;Parent=Physo133542;rank=4 scaffold_26 . CDS 638048 638167 . - 0 ID=Physo133542;Parent=Physo133542;rank=3 scaffold_26 . CDS 638259 638386 . - 0 ID=Physo133542;Parent=Physo133542;rank=2 scaffold_26 . CDS 638474 638633 . - 0 ID=Physo133542;Parent=Physo133542;rank=1 scaffold_26 . repeat_region 639887 639895 . ? . description=dust scaffold_26 . repeat_region 643863 643889 . ? . description=trf scaffold_26 . repeat_region 647327 647353 . ? . description=trf scaffold_26 . exon 637661 637777 . - . ID=Physo133542.5;Parent=Physo133542;constitutive=1;rank=5 scaffold_26 . exon 637860 637961 . - . ID=Physo133542.4;Parent=Physo133542;constitutive=1;rank=4 scaffold_26 . exon 638048 638167 . - . ID=Physo133542.3;Parent=Physo133542;constitutive=1;rank=3 scaffold_26 . exon 638259 638386 . - . ID=Physo133542.2;Parent=Physo133542;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . exon 638474 638633 . - . ID=Physo133542.1;Parent=Physo133542;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 640586 641361 . + . ID=Physo133543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260149;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 640586 641361 . + . ID=Physo133543;Parent=Physo133543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 640586 641167 . + 0 ID=Physo133543;Parent=Physo133543;rank=1 scaffold_26 . exon 640586 641361 . + . ID=Physo133543.1;Parent=Physo133543;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 642107 643390 . + . ID=Physo133544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260150;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 642107 643390 . + . ID=Physo133544;Parent=Physo133544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 642107 643315 . + 0 ID=Physo133544;Parent=Physo133544;rank=1 scaffold_26 . exon 642107 643390 . + . ID=Physo133544.1;Parent=Physo133544;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 644355 644952 . - . ID=Physo133545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260151;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 644355 644952 . - . ID=Physo133545;Parent=Physo133545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 644355 644952 . - . ID=Physo133545.1;Parent=Physo133545;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 . CDS 644356 644952 . - 0 ID=Physo133545;Parent=Physo133545;rank=1 scaffold_26 ensembl protein_coding_gene 646243 646954 . + . ID=Physo133546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260152;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 646243 646954 . + . ID=Physo133546;Parent=Physo133546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 646243 646750 . + . ID=Physo133546.1;Parent=Physo133546;constitutive=1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 646244 646750 . + 0 ID=Physo133546;Parent=Physo133546;rank=1 scaffold_26 . CDS 646775 646849 . + 0 ID=Physo133546;Parent=Physo133546;rank=2 scaffold_26 . exon 646775 646849 . + . ID=Physo133546.2;Parent=Physo133546;constitutive=1;rank=2 scaffold_26 . CDS 646940 646954 . + 0 ID=Physo133546;Parent=Physo133546;rank=3 scaffold_26 . exon 646940 646954 . + . ID=Physo133546.3;Parent=Physo133546;constitutive=1;rank=3 scaffold_26 . biological_region 650337 650340 0.999 - . logic_name=eponine scaffold_26 . biological_region 650394 650395 0.999 + . logic_name=eponine scaffold_26 . biological_region 653832 653833 0.999 - . logic_name=eponine scaffold_26 . biological_region 654587 654591 0.999 + . logic_name=eponine scaffold_26 ensembl protein_coding_gene 647837 649120 . - . ID=Physo133547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260153;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 647837 649120 . - . ID=Physo133547;Parent=Physo133547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 647837 649120 . - . ID=Physo133547.1;Parent=Physo133547;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 . CDS 647912 649120 . - 0 ID=Physo133547;Parent=Physo133547;rank=1 scaffold_26 ensembl protein_coding_gene 654036 654608 . + . ID=Physo133548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260154;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 654036 654608 . + . ID=Physo133548;Parent=Physo133548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 654036 654608 . + 0 ID=Physo133548;Parent=Physo133548;rank=1 scaffold_26 . exon 654036 654608 . + . ID=Physo133548.1;Parent=Physo133548;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 655508 663542 . - . ID=Physo133549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260155;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 655508 663542 . - . ID=Physo133549;Parent=Physo133549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 655508 656375 . - . ID=Physo133549.8;Parent=Physo133549;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=8 scaffold_26 . CDS 655807 656375 . - 0 ID=Physo133549;Parent=Physo133549;rank=8 scaffold_26 . CDS 656629 657795 . - 0 ID=Physo133549;Parent=Physo133549;rank=7 scaffold_26 . exon 656629 657795 . - . ID=Physo133549.7;Parent=Physo133549;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_26 . CDS 657842 660325 . - 0 ID=Physo133549;Parent=Physo133549;rank=6 scaffold_26 . CDS 660352 661150 . - 0 ID=Physo133549;Parent=Physo133549;rank=5 scaffold_26 . CDS 661468 661637 . - 0 ID=Physo133549;Parent=Physo133549;rank=4 scaffold_26 . CDS 661675 662093 . - 0 ID=Physo133549;Parent=Physo133549;rank=3 scaffold_26 . CDS 662156 662930 . - 0 ID=Physo133549;Parent=Physo133549;rank=2 scaffold_26 . CDS 663161 663542 . - 0 ID=Physo133549;Parent=Physo133549;rank=1 scaffold_26 . repeat_region 660838 660969 . ? . description=trf scaffold_26 . repeat_region 663304 663341 . ? . description=trf scaffold_26 . repeat_region 665212 665240 . ? . description=dust scaffold_26 . repeat_region 665216 665240 . ? . description=trf scaffold_26 . repeat_region 667134 667187 . ? . description=dust scaffold_26 . repeat_region 667134 667187 . ? . description=trf scaffold_26 . exon 657842 660325 . - . ID=Physo133549.6;Parent=Physo133549;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_26 . exon 660352 661150 . - . ID=Physo133549.5;Parent=Physo133549;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_26 . exon 661468 661637 . - . ID=Physo133549.4;Parent=Physo133549;constitutive=1;ensembl_phase=1;rank=4 scaffold_26 . exon 661675 662093 . - . ID=Physo133549.3;Parent=Physo133549;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_26 . exon 662156 662930 . - . ID=Physo133549.2;Parent=Physo133549;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . exon 663161 663542 . - . ID=Physo133549.1;Parent=Physo133549;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 665177 666110 . + . ID=Physo133550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260156;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 665177 666110 . + . ID=Physo133550;Parent=Physo133550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 665177 666110 . + . ID=Physo133550.1;Parent=Physo133550;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 665240 665977 . + 0 ID=Physo133550;Parent=Physo133550;rank=1 scaffold_26 ensembl protein_coding_gene 666907 667587 . + . ID=Physo133551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260157;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 666907 667587 . + . ID=Physo133551;Parent=Physo133551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 666907 667587 . + 0 ID=Physo133551;Parent=Physo133551;rank=1 scaffold_26 . exon 666907 667587 . + . ID=Physo133551.1;Parent=Physo133551;constitutive=1;rank=1 scaffold_26 . biological_region 668455 668458 0.999 - . logic_name=eponine scaffold_26 . biological_region 669286 669288 0.999 + . logic_name=eponine scaffold_26 . biological_region 669303 669309 0.999 - . logic_name=eponine scaffold_26 . biological_region 670305 670307 0.999 - . logic_name=eponine scaffold_26 . biological_region 670713 670715 0.999 - . logic_name=eponine scaffold_26 . biological_region 671515 671521 0.999 - . logic_name=eponine scaffold_26 . biological_region 671525 671525 0.999 + . logic_name=eponine scaffold_26 . biological_region 671779 671782 0.999 - . logic_name=eponine scaffold_26 . biological_region 672036 672038 0.999 - . logic_name=eponine scaffold_26 . biological_region 672113 672118 0.999 + . logic_name=eponine scaffold_26 . biological_region 672128 672132 0.999 + . logic_name=eponine scaffold_26 . biological_region 672244 672247 0.999 - . logic_name=eponine scaffold_26 . biological_region 672276 672279 0.999 + . logic_name=eponine scaffold_26 . biological_region 672389 672391 0.999 + . logic_name=eponine scaffold_26 . biological_region 672483 672487 0.999 + . logic_name=eponine scaffold_26 . biological_region 673062 673063 0.999 + . logic_name=eponine scaffold_26 . biological_region 673197 673203 0.999 - . logic_name=eponine scaffold_26 . biological_region 674220 674224 0.999 + . logic_name=eponine scaffold_26 . biological_region 675609 675615 0.999 - . logic_name=eponine scaffold_26 . biological_region 675667 675668 0.999 + . logic_name=eponine scaffold_26 . biological_region 675753 675754 0.999 - . logic_name=eponine scaffold_26 . biological_region 675761 675765 0.999 + . logic_name=eponine scaffold_26 . biological_region 675799 675804 0.999 - . logic_name=eponine scaffold_26 . biological_region 676902 676905 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 668056 668487 . + . ID=Physo133552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260158;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 668056 668487 . + . ID=Physo133552;Parent=Physo133552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 668056 668232 . + 0 ID=Physo133552;Parent=Physo133552;rank=1 scaffold_26 . exon 668056 668232 . + . ID=Physo133552.1;Parent=Physo133552;constitutive=1;rank=1 scaffold_26 . CDS 668290 668487 . + 0 ID=Physo133552;Parent=Physo133552;rank=2 scaffold_26 . exon 668290 668487 . + . ID=Physo133552.2;Parent=Physo133552;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 670500 671018 . + . ID=Physo133553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260159;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 670500 671018 . + . ID=Physo133553;Parent=Physo133553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 670500 671018 . + 0 ID=Physo133553;Parent=Physo133553;rank=1 scaffold_26 . exon 670500 671018 . + . ID=Physo133553.1;Parent=Physo133553;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 671417 672034 . - . ID=Physo133554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260160;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 671417 672034 . - . ID=Physo133554;Parent=Physo133554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 671417 672034 . - . ID=Physo133554.1;Parent=Physo133554;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 . CDS 671543 672034 . - 0 ID=Physo133554;Parent=Physo133554;rank=1 scaffold_26 ensembl protein_coding_gene 672924 673502 . + . ID=Physo133555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260161;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 672924 673502 . + . ID=Physo133555;Parent=Physo133555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 672924 673502 . + 0 ID=Physo133555;Parent=Physo133555;rank=1 scaffold_26 . exon 672924 673502 . + . ID=Physo133555.1;Parent=Physo133555;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 673891 674481 . + . ID=Physo133556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260162;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 673891 674481 . + . ID=Physo133556;Parent=Physo133556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 673891 674481 . + 0 ID=Physo133556;Parent=Physo133556;rank=1 scaffold_26 . exon 673891 674481 . + . ID=Physo133556.1;Parent=Physo133556;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 675249 675944 . - . ID=Physo133557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260163;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 675249 675944 . - . ID=Physo133557;Parent=Physo133557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 675249 675944 . - 0 ID=Physo133557;Parent=Physo133557;rank=1 scaffold_26 . exon 675249 675944 . - . ID=Physo133557.1;Parent=Physo133557;constitutive=1;rank=1 scaffold_26 . repeat_region 684226 684377 . ? . description=trf scaffold_26 ensembl protein_coding_gene 677538 678209 . + . ID=Physo133558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260164;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 677538 678209 . + . ID=Physo133558;Parent=Physo133558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 677538 678209 . + 0 ID=Physo133558;Parent=Physo133558;rank=1 scaffold_26 . exon 677538 678209 . + . ID=Physo133558.1;Parent=Physo133558;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 678379 679405 . + . ID=Physo133559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260165;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 678379 679405 . + . ID=Physo133559;Parent=Physo133559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 678379 679083 . + 0 ID=Physo133559;Parent=Physo133559;rank=1 scaffold_26 . exon 678379 679083 . + . ID=Physo133559.1;Parent=Physo133559;constitutive=1;rank=1 scaffold_26 . CDS 679154 679405 . + 0 ID=Physo133559;Parent=Physo133559;rank=2 scaffold_26 . exon 679154 679405 . + . ID=Physo133559.2;Parent=Physo133559;constitutive=1;rank=2 scaffold_26 ensembl protein_coding_gene 679509 680237 . - . ID=Physo133560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260166;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 679509 680237 . - . ID=Physo133560;Parent=Physo133560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 679509 680237 . - 0 ID=Physo133560;Parent=Physo133560;rank=1 scaffold_26 . exon 679509 680237 . - . ID=Physo133560.1;Parent=Physo133560;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 681850 683682 . + . ID=Physo133561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260167;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 681850 683682 . + . ID=Physo133561;Parent=Physo133561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 681850 682645 . + 0 ID=Physo133561;Parent=Physo133561;rank=1 scaffold_26 . exon 681850 682645 . + . ID=Physo133561.1;Parent=Physo133561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 682676 683682 . + 0 ID=Physo133561;Parent=Physo133561;rank=2 scaffold_26 . exon 682676 683682 . + . ID=Physo133561.2;Parent=Physo133561;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 685434 686685 . - . ID=Physo133562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260168;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 685434 686685 . - . ID=Physo133562;Parent=Physo133562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 685434 685996 . - . ID=Physo133562.3;Parent=Physo133562;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_26 . CDS 685622 685996 . - 0 ID=Physo133562;Parent=Physo133562;rank=3 scaffold_26 . CDS 686064 686434 . - 0 ID=Physo133562;Parent=Physo133562;rank=2 scaffold_26 . exon 686064 686434 . - . ID=Physo133562.2;Parent=Physo133562;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 686493 686538 . - 0 ID=Physo133562;Parent=Physo133562;rank=1 scaffold_26 . exon 686493 686685 . - . ID=Physo133562.1;Parent=Physo133562;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_26 . biological_region 693934 693934 0.999 + . logic_name=eponine scaffold_26 . repeat_region 694122 694130 . ? . description=dust scaffold_26 . biological_region 694448 694448 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 690507 692352 . + . ID=Physo133563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260169;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 690507 692352 . + . ID=Physo133563;Parent=Physo133563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 690507 692280 . + 0 ID=Physo133563;Parent=Physo133563;rank=1 scaffold_26 . exon 690507 692280 . + . ID=Physo133563.1;Parent=Physo133563;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 692306 692352 . + 0 ID=Physo133563;Parent=Physo133563;rank=2 scaffold_26 . exon 692306 692352 . + . ID=Physo133563.2;Parent=Physo133563;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 ensembl protein_coding_gene 692657 694119 . - . ID=Physo133564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260170;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 692657 694119 . - . ID=Physo133564;Parent=Physo133564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 692657 692941 . - 0 ID=Physo133564;Parent=Physo133564;rank=3 scaffold_26 . exon 692657 692941 . - . ID=Physo133564.3;Parent=Physo133564;constitutive=1;rank=3 scaffold_26 . CDS 693118 693680 . - 0 ID=Physo133564;Parent=Physo133564;rank=2 scaffold_26 . exon 693118 693680 . - . ID=Physo133564.2;Parent=Physo133564;constitutive=1;ensembl_phase=1;rank=2 scaffold_26 . CDS 693765 694119 . - 0 ID=Physo133564;Parent=Physo133564;rank=1 scaffold_26 . exon 693765 694119 . - . ID=Physo133564.1;Parent=Physo133564;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 ensembl protein_coding_gene 694657 696723 . + . ID=Physo133565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260171;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 694657 696723 . + . ID=Physo133565;Parent=Physo133565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 694657 696723 . + 0 ID=Physo133565;Parent=Physo133565;rank=1 scaffold_26 . exon 694657 696723 . + . ID=Physo133565.1;Parent=Physo133565;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 696971 698962 . - . ID=Physo133566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260172;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 696971 698962 . - . ID=Physo133566;Parent=Physo133566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 696971 698962 . - 0 ID=Physo133566;Parent=Physo133566;rank=1 scaffold_26 . exon 696971 698962 . - . ID=Physo133566.1;Parent=Physo133566;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 700375 705762 . - . ID=Physo133567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260173;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 700375 705762 . - . ID=Physo133567;Parent=Physo133567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 700375 705762 . - . ID=Physo133567.1;Parent=Physo133567;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_26 . CDS 700552 705762 . - 0 ID=Physo133567;Parent=Physo133567;rank=1 scaffold_26 . biological_region 708721 708723 0.999 + . logic_name=eponine scaffold_26 . biological_region 708801 708804 0.999 - . logic_name=eponine scaffold_26 . biological_region 708881 708884 0.999 - . logic_name=eponine scaffold_26 . biological_region 709397 709399 0.999 - . logic_name=eponine scaffold_26 . biological_region 709429 709434 0.999 - . logic_name=eponine scaffold_26 . repeat_region 713793 713817 . ? . description=dust scaffold_26 . repeat_region 713793 713817 . ? . description=trf scaffold_26 . biological_region 713840 713846 0.999 - . logic_name=eponine scaffold_26 . biological_region 713895 713902 0.999 + . logic_name=eponine scaffold_26 . biological_region 713996 714000 0.999 - . logic_name=eponine scaffold_26 . biological_region 714053 714058 0.999 + . logic_name=eponine scaffold_26 . biological_region 714117 714117 0.999 - . logic_name=eponine scaffold_26 . biological_region 714169 714176 0.999 + . logic_name=eponine scaffold_26 . biological_region 714345 714345 0.999 - . logic_name=eponine scaffold_26 . biological_region 714346 714346 0.999 + . logic_name=eponine scaffold_26 . biological_region 715350 715357 0.999 + . logic_name=eponine scaffold_26 . biological_region 715855 715857 0.999 + . logic_name=eponine scaffold_26 . biological_region 716080 716086 0.999 - . logic_name=eponine scaffold_26 . biological_region 716165 716166 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 708634 713239 . + . ID=Physo133568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260174;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 708634 713239 . + . ID=Physo133568;Parent=Physo133568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 708634 712853 . + 0 ID=Physo133568;Parent=Physo133568;rank=1 scaffold_26 . exon 708634 712853 . + . ID=Physo133568.1;Parent=Physo133568;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 712943 713204 . + 0 ID=Physo133568;Parent=Physo133568;rank=2 scaffold_26 . exon 712943 713239 . + . ID=Physo133568.2;Parent=Physo133568;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_26 ensembl protein_coding_gene 713760 716468 . + . ID=Physo133569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260175;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 713760 716468 . + . ID=Physo133569;Parent=Physo133569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 713760 716468 . + 0 ID=Physo133569;Parent=Physo133569;rank=1 scaffold_26 . exon 713760 716468 . + . ID=Physo133569.1;Parent=Physo133569;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 716813 718256 . + . ID=Physo133570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260176;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 716813 718256 . + . ID=Physo133570;Parent=Physo133570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 716813 716979 . + 0 ID=Physo133570;Parent=Physo133570;rank=1 scaffold_26 . exon 716813 716979 . + . ID=Physo133570.1;Parent=Physo133570;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 717464 718256 . + 0 ID=Physo133570;Parent=Physo133570;rank=2 scaffold_26 . exon 717464 718256 . + . ID=Physo133570.2;Parent=Physo133570;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 ensembl protein_coding_gene 718528 719217 . + . ID=Physo133571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260177;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 718528 719217 . + . ID=Physo133571;Parent=Physo133571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 718528 719217 . + 0 ID=Physo133571;Parent=Physo133571;rank=1 scaffold_26 . exon 718528 719217 . + . ID=Physo133571.1;Parent=Physo133571;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 720033 720767 . + . ID=Physo133572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260178;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 720033 720767 . + . ID=Physo133572;Parent=Physo133572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 720033 720767 . + 0 ID=Physo133572;Parent=Physo133572;rank=1 scaffold_26 . exon 720033 720767 . + . ID=Physo133572.1;Parent=Physo133572;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 721054 722097 . + . ID=Physo133573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260179;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 721054 722097 . + . ID=Physo133573;Parent=Physo133573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 721054 722097 . + 0 ID=Physo133573;Parent=Physo133573;rank=1 scaffold_26 . exon 721054 722097 . + . ID=Physo133573.1;Parent=Physo133573;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 722283 723744 . - . ID=Physo133574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260180;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 722283 723744 . - . ID=Physo133574;Parent=Physo133574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 722283 723126 . - 0 ID=Physo133574;Parent=Physo133574;rank=2 scaffold_26 . exon 722283 723126 . - . ID=Physo133574.2;Parent=Physo133574;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 723161 723744 . - 0 ID=Physo133574;Parent=Physo133574;rank=1 scaffold_26 . exon 723161 723744 . - . ID=Physo133574.1;Parent=Physo133574;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 ensembl protein_coding_gene 727030 728497 . + . ID=Physo133575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260181;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 727030 728497 . + . ID=Physo133575;Parent=Physo133575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 727030 727619 . + 0 ID=Physo133575;Parent=Physo133575;rank=1 scaffold_26 . exon 727030 727619 . + . ID=Physo133575.1;Parent=Physo133575;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_26 . CDS 727654 728497 . + 0 ID=Physo133575;Parent=Physo133575;rank=2 scaffold_26 . biological_region 727595 727599 0.999 - . logic_name=eponine scaffold_26 . repeat_region 729556 729563 . ? . description=dust scaffold_26 . biological_region 731168 731170 0.999 + . logic_name=eponine scaffold_26 . biological_region 731260 731262 0.999 - . logic_name=eponine scaffold_26 . biological_region 736964 736969 0.999 + . logic_name=eponine scaffold_26 . exon 727654 728497 . + . ID=Physo133575.2;Parent=Physo133575;constitutive=1;ensembl_phase=2;rank=2 scaffold_26 ensembl protein_coding_gene 730156 732282 . + . ID=Physo133576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260182;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 730156 732282 . + . ID=Physo133576;Parent=Physo133576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 730156 732282 . + 0 ID=Physo133576;Parent=Physo133576;rank=1 scaffold_26 . exon 730156 732282 . + . ID=Physo133576.1;Parent=Physo133576;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 733133 735229 . + . ID=Physo133577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260183;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 733133 735229 . + . ID=Physo133577;Parent=Physo133577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 733133 735229 . + 0 ID=Physo133577;Parent=Physo133577;rank=1 scaffold_26 . exon 733133 735229 . + . ID=Physo133577.1;Parent=Physo133577;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 735588 737742 . + . ID=Physo133578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260184;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 735588 737742 . + . ID=Physo133578;Parent=Physo133578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 735588 736041 . + 0 ID=Physo133578;Parent=Physo133578;rank=1 scaffold_26 . exon 735588 736041 . + . ID=Physo133578.1;Parent=Physo133578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_26 . CDS 736247 736358 . + 0 ID=Physo133578;Parent=Physo133578;rank=2 scaffold_26 . exon 736247 736358 . + . ID=Physo133578.2;Parent=Physo133578;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_26 . CDS 736552 736831 . + 0 ID=Physo133578;Parent=Physo133578;rank=3 scaffold_26 . exon 736552 736831 . + . ID=Physo133578.3;Parent=Physo133578;constitutive=1;ensembl_phase=2;rank=3 scaffold_26 . CDS 737011 737742 . + 0 ID=Physo133578;Parent=Physo133578;rank=4 scaffold_26 . exon 737011 737742 . + . ID=Physo133578.4;Parent=Physo133578;constitutive=1;rank=4 scaffold_26 ensembl protein_coding_gene 744724 745941 . - . ID=Physo108714;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_260015;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 744724 745941 . - . ID=Physo108714;Parent=Physo108714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 744724 745941 . - 0 ID=Physo108714;Parent=Physo108714;rank=1 scaffold_26 . exon 744724 745941 . - . ID=Physo108714.1;Parent=Physo108714;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 746805 747851 . - . ID=Physo115499;biotype=protein_coding;external_name=estExt_Genewise1.C_260140;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 746805 747851 . - . ID=Physo115499;Parent=Physo115499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 746805 747827 . - 0 ID=Physo115499;Parent=Physo115499;rank=1 scaffold_26 . exon 746805 747851 . - . ID=Physo115499.1;Parent=Physo115499;constitutive=1;ensembl_phase=-1;rank=1 scaffold_26 ensembl protein_coding_gene 738113 740077 . + . ID=Physo133579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260185;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 738113 740077 . + . ID=Physo133579;Parent=Physo133579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 738113 740077 . + 0 ID=Physo133579;Parent=Physo133579;rank=1 scaffold_26 . exon 738113 740077 . + . ID=Physo133579.1;Parent=Physo133579;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 741637 743328 . + . ID=Physo133580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260186;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 741637 743328 . + . ID=Physo133580;Parent=Physo133580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 741637 743328 . + 0 ID=Physo133580;Parent=Physo133580;rank=1 scaffold_26 . exon 741637 743328 . + . ID=Physo133580.1;Parent=Physo133580;constitutive=1;rank=1 scaffold_26 . biological_region 747094 747096 0.999 + . logic_name=eponine scaffold_26 . repeat_region 749770 751922 . ? . description=dust scaffold_26 . biological_region 752169 752170 0.999 + . logic_name=eponine scaffold_26 . repeat_region 753061 757744 . ? . description=dust scaffold_26 ensembl protein_coding_gene 748496 749508 . - . ID=Physo133583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260189;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 748496 749508 . - . ID=Physo133583;Parent=Physo133583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 748496 748584 . - . ID=Physo133583.3;Parent=Physo133583;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_26 . CDS 748573 748584 . - 0 ID=Physo133583;Parent=Physo133583;rank=3 scaffold_26 . CDS 748778 749041 . - 0 ID=Physo133583;Parent=Physo133583;rank=2 scaffold_26 . exon 748778 749041 . - . ID=Physo133583.2;Parent=Physo133583;constitutive=1;rank=2 scaffold_26 . CDS 749122 749508 . - 0 ID=Physo133583;Parent=Physo133583;rank=1 scaffold_26 . exon 749122 749508 . - . ID=Physo133583.1;Parent=Physo133583;constitutive=1;rank=1 scaffold_26 . repeat_region 757745 772179 . ? . description=dust scaffold_26 . biological_region 775308 775311 0.999 + . logic_name=eponine scaffold_26 . biological_region 775338 775344 0.999 + . logic_name=eponine scaffold_26 . biological_region 775997 776000 0.999 + . logic_name=eponine scaffold_26 . biological_region 776058 776062 0.999 - . logic_name=eponine scaffold_26 . biological_region 776076 776080 0.999 - . logic_name=eponine scaffold_26 . biological_region 776403 776404 0.999 + . logic_name=eponine scaffold_26 . biological_region 776457 776458 0.999 - . logic_name=eponine scaffold_26 . biological_region 776510 776517 0.999 + . logic_name=eponine scaffold_26 . biological_region 776516 776521 0.999 - . logic_name=eponine scaffold_26 . biological_region 776593 776597 0.999 - . logic_name=eponine scaffold_26 ensembl protein_coding_gene 775717 776124 . + . ID=Physo133584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260190;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 775717 776124 . + . ID=Physo133584;Parent=Physo133584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 775717 776124 . + 0 ID=Physo133584;Parent=Physo133584;rank=1 scaffold_26 . exon 775717 776124 . + . ID=Physo133584.1;Parent=Physo133584;constitutive=1;rank=1 scaffold_26 . repeat_region 777826 777989 . ? . description=trf scaffold_26 . repeat_region 778052 778071 . ? . description=trf scaffold_26 . repeat_region 779292 779312 . ? . description=trf scaffold_26 ensembl protein_coding_gene 777429 778397 . + . ID=Physo133585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260191;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 777429 778397 . + . ID=Physo133585;Parent=Physo133585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 777429 778397 . + 0 ID=Physo133585;Parent=Physo133585;rank=1 scaffold_26 . exon 777429 778397 . + . ID=Physo133585.1;Parent=Physo133585;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 779780 780539 . + . ID=Physo133586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260192;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 779780 780539 . + . ID=Physo133586;Parent=Physo133586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 779780 780539 . + . ID=Physo133586.1;Parent=Physo133586;constitutive=1;ensembl_phase=-1;rank=1 scaffold_26 . CDS 779877 780539 . + 0 ID=Physo133586;Parent=Physo133586;rank=1 scaffold_26 ensembl protein_coding_gene 781531 781941 . + . ID=Physo133587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260193;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 781531 781941 . + . ID=Physo133587;Parent=Physo133587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . CDS 781531 781941 . + 0 ID=Physo133587;Parent=Physo133587;rank=1 scaffold_26 . exon 781531 781941 . + . ID=Physo133587.1;Parent=Physo133587;constitutive=1;rank=1 scaffold_26 ensembl protein_coding_gene 784518 786076 . - . ID=Physo133588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_260194;logic_name=jgi_physo1_1 scaffold_26 ensembl transcript 784518 786076 . - . ID=Physo133588;Parent=Physo133588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_26 . exon 784518 785104 . - . ID=Physo133588.4;Parent=Physo133588;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_26 . CDS 784610 785104 . - 0 ID=Physo133588;Parent=Physo133588;rank=4 scaffold_26 . CDS 785178 785575 . - 0 ID=Physo133588;Parent=Physo133588;rank=3 scaffold_26 . exon 785178 785575 . - . ID=Physo133588.3;Parent=Physo133588;constitutive=1;ensembl_phase=1;rank=3 scaffold_26 . CDS 785651 785823 . - 0 ID=Physo133588;Parent=Physo133588;rank=2 scaffold_26 . exon 785651 785823 . - . ID=Physo133588.2;Parent=Physo133588;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_26 . CDS 785964 786049 . - 0 ID=Physo133588;Parent=Physo133588;rank=1 scaffold_26 . exon 785964 786076 . - . ID=Physo133588.1;Parent=Physo133588;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_25 1 790490 scaffold_25 . repeat_region 226 263 . ? . description=dust scaffold_25 . repeat_region 293 330 . ? . description=trf scaffold_25 . repeat_region 771 826 . ? . description=dust scaffold_25 . repeat_region 856 893 . ? . description=trf scaffold_25 . biological_region 8683 8686 0.999 - . logic_name=eponine scaffold_25 . biological_region 9016 9020 0.999 + . logic_name=eponine scaffold_25 ensembl tRNA_gene 667 738 . - . ID=EPrPSOG00000000112;biotype=tRNA;description=tRNA-Asp for anticodon GUC [Source:TRNASCAN_SE%3BAcc:tRNA-Asp];external_name=tRNA-Asp;logic_name=ncrna_eg scaffold_25 ensembl transcript 667 738 . - . ID=EPrPSOT00000000112;Parent=EPrPSOG00000000112;biotype=tRNA;logic_name=ncrna_eg scaffold_25 ensembl tRNA_gene 8296 8367 . - . ID=EPrPSOG00000000276;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_25 ensembl transcript 8296 8367 . - . ID=EPrPSOT00000000276;Parent=EPrPSOG00000000276;biotype=tRNA;logic_name=ncrna_eg scaffold_25 ensembl tRNA_gene 104 175 . - . ID=EPrPSOG00000000281;biotype=tRNA;description=tRNA-Asp for anticodon GUC [Source:TRNASCAN_SE%3BAcc:tRNA-Asp];external_name=tRNA-Asp;logic_name=ncrna_eg scaffold_25 ensembl transcript 104 175 . - . ID=EPrPSOT00000000281;Parent=EPrPSOG00000000281;biotype=tRNA;logic_name=ncrna_eg scaffold_25 . exon 667 738 . - . ID=EPrPSOE00000000112;Parent=EPrPSOT00000000112;constitutive=1;rank=1 scaffold_25 . exon 8296 8367 . - . ID=EPrPSOE00000000276;Parent=EPrPSOT00000000276;constitutive=1;rank=1 scaffold_25 . exon 104 175 . - . ID=EPrPSOE00000000281;Parent=EPrPSOT00000000281;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 6531 7986 . + . ID=Physo133247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250001;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 6531 7986 . + . ID=Physo133247;Parent=Physo133247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 6531 6836 . + 0 ID=Physo133247;Parent=Physo133247;rank=1 scaffold_25 . exon 6531 6836 . + . ID=Physo133247.1;Parent=Physo133247;constitutive=1;rank=1 scaffold_25 . CDS 6883 7986 . + 0 ID=Physo133247;Parent=Physo133247;rank=2 scaffold_25 . exon 6883 7986 . + . ID=Physo133247.2;Parent=Physo133247;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 10068 11127 . - . ID=Physo133248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250002;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 10068 11127 . - . ID=Physo133248;Parent=Physo133248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 10068 10369 . - 0 ID=Physo133248;Parent=Physo133248;rank=3 scaffold_25 . exon 10068 10369 . - . ID=Physo133248.3;Parent=Physo133248;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 10541 10758 . - 0 ID=Physo133248;Parent=Physo133248;rank=2 scaffold_25 . exon 10541 10758 . - . ID=Physo133248.2;Parent=Physo133248;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 10910 11127 . - 0 ID=Physo133248;Parent=Physo133248;rank=1 scaffold_25 . exon 10910 11127 . - . ID=Physo133248.1;Parent=Physo133248;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . biological_region 20152 20153 0.999 - . logic_name=eponine scaffold_25 . biological_region 22075 22081 0.999 + . logic_name=eponine scaffold_25 . biological_region 22082 22084 0.999 - . logic_name=eponine scaffold_25 . biological_region 22204 22207 0.999 - . logic_name=eponine scaffold_25 . biological_region 22209 22210 0.999 + . logic_name=eponine scaffold_25 . biological_region 22226 22231 0.999 + . logic_name=eponine scaffold_25 . repeat_region 22234 22335 . ? . description=trf scaffold_25 . repeat_region 22258 22305 . ? . description=trf scaffold_25 . biological_region 22262 22265 0.999 + . logic_name=eponine scaffold_25 . biological_region 22312 22319 0.999 - . logic_name=eponine scaffold_25 . biological_region 22738 22740 0.999 + . logic_name=eponine scaffold_25 . repeat_region 22739 22829 . ? . description=trf scaffold_25 . repeat_region 22874 22882 . ? . description=dust scaffold_25 . biological_region 23002 23002 0.999 + . logic_name=eponine scaffold_25 . biological_region 23033 23034 0.999 - . logic_name=eponine scaffold_25 . repeat_region 23771 23823 . ? . description=trf scaffold_25 . biological_region 23811 23812 0.999 - . logic_name=eponine scaffold_25 . biological_region 23869 23873 0.999 - . logic_name=eponine scaffold_25 . biological_region 24013 24014 0.999 - . logic_name=eponine scaffold_25 . biological_region 24419 24423 0.999 - . logic_name=eponine scaffold_25 . biological_region 24853 24858 0.999 + . logic_name=eponine scaffold_25 . biological_region 24886 24891 0.999 + . logic_name=eponine scaffold_25 . biological_region 24931 24938 0.999 + . logic_name=eponine scaffold_25 . biological_region 24964 24965 0.999 - . logic_name=eponine scaffold_25 . biological_region 24978 24984 0.999 - . logic_name=eponine scaffold_25 . biological_region 25026 25029 0.999 - . logic_name=eponine scaffold_25 . biological_region 25556 25563 0.999 - . logic_name=eponine scaffold_25 . biological_region 26176 26179 0.999 + . logic_name=eponine scaffold_25 . biological_region 26366 26369 0.999 - . logic_name=eponine scaffold_25 . biological_region 26874 26880 0.999 + . logic_name=eponine scaffold_25 . biological_region 26977 26979 0.999 - . logic_name=eponine scaffold_25 . biological_region 28347 28350 0.999 + . logic_name=eponine scaffold_25 . repeat_region 28943 29017 . ? . description=trf scaffold_25 . biological_region 28981 28984 0.999 + . logic_name=eponine scaffold_25 . biological_region 29007 29010 0.999 + . logic_name=eponine scaffold_25 . biological_region 29024 29026 0.999 + . logic_name=eponine scaffold_25 . biological_region 29036 29040 0.999 + . logic_name=eponine scaffold_25 . biological_region 29052 29055 0.999 + . logic_name=eponine scaffold_25 . biological_region 29057 29061 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 23037 25134 . + . ID=Physo133249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250003;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 23037 25134 . + . ID=Physo133249;Parent=Physo133249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 23037 23479 . + 0 ID=Physo133249;Parent=Physo133249;rank=1 scaffold_25 . exon 23037 23479 . + . ID=Physo133249.1;Parent=Physo133249;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 23599 23985 . + 0 ID=Physo133249;Parent=Physo133249;rank=2 scaffold_25 . exon 23599 23985 . + . ID=Physo133249.2;Parent=Physo133249;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_25 . CDS 24021 25134 . + 0 ID=Physo133249;Parent=Physo133249;rank=3 scaffold_25 . exon 24021 25134 . + . ID=Physo133249.3;Parent=Physo133249;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 ensembl protein_coding_gene 25838 30793 . + . ID=Physo133250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250004;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 25838 30793 . + . ID=Physo133250;Parent=Physo133250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 25838 26803 . + 0 ID=Physo133250;Parent=Physo133250;rank=1 scaffold_25 . exon 25838 26803 . + . ID=Physo133250.1;Parent=Physo133250;constitutive=1;rank=1 scaffold_25 . CDS 26888 27436 . + 0 ID=Physo133250;Parent=Physo133250;rank=2 scaffold_25 . exon 26888 27436 . + . ID=Physo133250.2;Parent=Physo133250;constitutive=1;rank=2 scaffold_25 . CDS 27468 29440 . + 0 ID=Physo133250;Parent=Physo133250;rank=3 scaffold_25 . exon 27468 29440 . + . ID=Physo133250.3;Parent=Physo133250;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 29489 29606 . + 0 ID=Physo133250;Parent=Physo133250;rank=4 scaffold_25 . exon 29489 29606 . + . ID=Physo133250.4;Parent=Physo133250;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 29676 30374 . + 0 ID=Physo133250;Parent=Physo133250;rank=5 scaffold_25 . CDS 30467 30793 . + 0 ID=Physo133250;Parent=Physo133250;rank=6 scaffold_25 . exon 29676 30374 . + . ID=Physo133250.5;Parent=Physo133250;constitutive=1;rank=5 scaffold_25 . exon 30467 30793 . + . ID=Physo133250.6;Parent=Physo133250;constitutive=1;rank=6 scaffold_25 ensembl protein_coding_gene 31764 34137 . - . ID=Physo133251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250005;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 31764 34137 . - . ID=Physo133251;Parent=Physo133251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 31764 33258 . - 0 ID=Physo133251;Parent=Physo133251;rank=2 scaffold_25 . exon 31764 33258 . - . ID=Physo133251.2;Parent=Physo133251;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 33278 34137 . - 0 ID=Physo133251;Parent=Physo133251;rank=1 scaffold_25 . exon 33278 34137 . - . ID=Physo133251.1;Parent=Physo133251;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 35671 36465 . - . ID=Physo133252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250006;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 35671 36465 . - . ID=Physo133252;Parent=Physo133252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 35671 36169 . - . ID=Physo133252.3;Parent=Physo133252;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_25 . CDS 35727 36169 . - 0 ID=Physo133252;Parent=Physo133252;rank=3 scaffold_25 . CDS 36239 36260 . - 0 ID=Physo133252;Parent=Physo133252;rank=2 scaffold_25 . exon 36239 36260 . - . ID=Physo133252.2;Parent=Physo133252;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 36316 36465 . - 0 ID=Physo133252;Parent=Physo133252;rank=1 scaffold_25 . exon 36316 36465 . - . ID=Physo133252.1;Parent=Physo133252;constitutive=1;rank=1 scaffold_25 . biological_region 39920 39923 0.999 + . logic_name=eponine scaffold_25 . biological_region 39944 39950 0.999 + . logic_name=eponine scaffold_25 . biological_region 39992 39999 0.999 + . logic_name=eponine scaffold_25 . biological_region 40007 40007 0.999 - . logic_name=eponine scaffold_25 . biological_region 40160 40161 0.999 + . logic_name=eponine scaffold_25 . biological_region 40176 40178 0.999 - . logic_name=eponine scaffold_25 . biological_region 40233 40233 0.999 + . logic_name=eponine scaffold_25 . biological_region 40327 40330 0.999 - . logic_name=eponine scaffold_25 . biological_region 40342 40345 0.999 + . logic_name=eponine scaffold_25 . repeat_region 43077 43108 . ? . description=trf scaffold_25 . repeat_region 47072 47079 . ? . description=dust scaffold_25 . repeat_region 47680 47708 . ? . description=trf scaffold_25 . biological_region 48913 48915 0.999 + . logic_name=eponine scaffold_25 . biological_region 48953 48960 0.999 + . logic_name=eponine scaffold_25 . biological_region 48968 48972 0.999 - . logic_name=eponine scaffold_25 . biological_region 48985 48988 0.999 - . logic_name=eponine scaffold_25 . biological_region 49015 49018 0.999 - . logic_name=eponine scaffold_25 . biological_region 49028 49031 0.999 - . logic_name=eponine scaffold_25 . biological_region 49049 49055 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 47953 49915 . - . ID=Physo108696;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_250001;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 47953 49915 . - . ID=Physo108696;Parent=Physo108696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 47953 49175 . - . ID=Physo108696.4;Parent=Physo108696;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_25 . CDS 47997 49175 . - 0 ID=Physo108696;Parent=Physo108696;rank=4 scaffold_25 . CDS 49256 49512 . - 0 ID=Physo108696;Parent=Physo108696;rank=3 scaffold_25 . exon 49256 49512 . - . ID=Physo108696.3;Parent=Physo108696;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 49583 49676 . - 0 ID=Physo108696;Parent=Physo108696;rank=2 scaffold_25 . CDS 49757 49915 . - 0 ID=Physo108696;Parent=Physo108696;rank=1 scaffold_25 ensembl protein_coding_gene 39924 41354 . + . ID=Physo133253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250007;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 39924 41354 . + . ID=Physo133253;Parent=Physo133253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 39924 41201 . + 0 ID=Physo133253;Parent=Physo133253;rank=1 scaffold_25 . exon 39924 41201 . + . ID=Physo133253.1;Parent=Physo133253;constitutive=1;rank=1 scaffold_25 . CDS 41325 41354 . + 0 ID=Physo133253;Parent=Physo133253;rank=2 scaffold_25 . exon 41325 41354 . + . ID=Physo133253.2;Parent=Physo133253;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 41447 43126 . - . ID=Physo133254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250008;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 41447 43126 . - . ID=Physo133254;Parent=Physo133254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 41447 43126 . - 0 ID=Physo133254;Parent=Physo133254;rank=1 scaffold_25 . exon 41447 43126 . - . ID=Physo133254.1;Parent=Physo133254;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 43631 46663 . - . ID=Physo133255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250009;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 43631 46663 . - . ID=Physo133255;Parent=Physo133255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 43631 45788 . - 0 ID=Physo133255;Parent=Physo133255;rank=3 scaffold_25 . exon 43631 45788 . - . ID=Physo133255.3;Parent=Physo133255;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 46038 46519 . - 0 ID=Physo133255;Parent=Physo133255;rank=2 scaffold_25 . exon 46038 46519 . - . ID=Physo133255.2;Parent=Physo133255;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . CDS 46610 46663 . - 0 ID=Physo133255;Parent=Physo133255;rank=1 scaffold_25 . exon 46610 46663 . - . ID=Physo133255.1;Parent=Physo133255;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 46939 47721 . - . ID=Physo133256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250010;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 46939 47721 . - . ID=Physo133256;Parent=Physo133256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 46939 47721 . - 0 ID=Physo133256;Parent=Physo133256;rank=1 scaffold_25 . exon 46939 47721 . - . ID=Physo133256.1;Parent=Physo133256;constitutive=1;rank=1 scaffold_25 . exon 49583 49676 . - . ID=Physo108696.2;Parent=Physo108696;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . exon 49757 49915 . - . ID=Physo108696.1;Parent=Physo108696;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 58997 60472 . - . ID=Physo133259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250013;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 58997 60472 . - . ID=Physo133259;Parent=Physo133259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 58997 59313 . - . ID=Physo133259.4;Parent=Physo133259;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_25 . CDS 59127 59313 . - 0 ID=Physo133259;Parent=Physo133259;rank=4 scaffold_25 . CDS 59404 59523 . - 0 ID=Physo133259;Parent=Physo133259;rank=3 scaffold_25 . CDS 59610 59826 . - 0 ID=Physo133259;Parent=Physo133259;rank=2 scaffold_25 . CDS 59907 60429 . - 0 ID=Physo133259;Parent=Physo133259;rank=1 scaffold_25 ensembl protein_coding_gene 57012 58845 . - . ID=Physo156696;biotype=protein_coding;external_name=C_scaffold_25000002;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 57012 58845 . - . ID=Physo156696;Parent=Physo156696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 57012 57089 . - 0 ID=Physo156696;Parent=Physo156696;rank=6 scaffold_25 . exon 57012 57089 . - . ID=Physo156696.6;Parent=Physo156696;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 57172 57262 . - 0 ID=Physo156696;Parent=Physo156696;rank=5 scaffold_25 . exon 57172 57262 . - . ID=Physo156696.5;Parent=Physo156696;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_25 . CDS 57340 57410 . - 0 ID=Physo156696;Parent=Physo156696;rank=4 scaffold_25 . exon 57340 57410 . - . ID=Physo156696.4;Parent=Physo156696;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 57456 58082 . - 0 ID=Physo156696;Parent=Physo156696;rank=3 scaffold_25 . exon 57456 58082 . - . ID=Physo156696.3;Parent=Physo156696;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 58107 58356 . - 0 ID=Physo156696;Parent=Physo156696;rank=2 scaffold_25 . exon 58107 58356 . - . ID=Physo156696.2;Parent=Physo156696;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 58483 58845 . - 0 ID=Physo156696;Parent=Physo156696;rank=1 scaffold_25 . exon 58483 58845 . - . ID=Physo156696.1;Parent=Physo156696;constitutive=1;rank=1 scaffold_25 . biological_region 60092 60095 0.999 - . logic_name=eponine scaffold_25 . repeat_region 60462 60510 . ? . description=trf scaffold_25 . repeat_region 60481 60510 . ? . description=dust scaffold_25 . biological_region 61046 61049 0.999 + . logic_name=eponine scaffold_25 . repeat_region 62010 62034 . ? . description=trf scaffold_25 . biological_region 62035 62038 0.999 - . logic_name=eponine scaffold_25 . biological_region 62667 62671 0.999 + . logic_name=eponine scaffold_25 . biological_region 63084 63085 0.999 - . logic_name=eponine scaffold_25 . repeat_region 66573 66581 . ? . description=dust scaffold_25 . exon 59404 59523 . - . ID=Physo133259.3;Parent=Physo133259;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_25 . exon 59610 59826 . - . ID=Physo133259.2;Parent=Physo133259;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_25 . exon 59907 60472 . - . ID=Physo133259.1;Parent=Physo133259;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_25 ensembl protein_coding_gene 60709 61545 . + . ID=Physo156701;biotype=protein_coding;external_name=C_scaffold_25000007;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 60709 61545 . + . ID=Physo156701;Parent=Physo156701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 60709 61545 . + 0 ID=Physo156701;Parent=Physo156701;rank=1 scaffold_25 . exon 60709 61545 . + . ID=Physo156701.1;Parent=Physo156701;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 61714 62791 . - . ID=Physo156705;biotype=protein_coding;external_name=C_scaffold_25000011;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 61714 62791 . - . ID=Physo156705;Parent=Physo156705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 61714 61900 . - 0 ID=Physo156705;Parent=Physo156705;rank=5 scaffold_25 . exon 61714 61900 . - . ID=Physo156705.5;Parent=Physo156705;constitutive=1;ensembl_phase=2;rank=5 scaffold_25 . CDS 61981 62100 . - 0 ID=Physo156705;Parent=Physo156705;rank=4 scaffold_25 . exon 61981 62100 . - . ID=Physo156705.4;Parent=Physo156705;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_25 . CDS 62178 62394 . - 0 ID=Physo156705;Parent=Physo156705;rank=3 scaffold_25 . exon 62178 62394 . - . ID=Physo156705.3;Parent=Physo156705;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_25 . CDS 62463 62631 . - 0 ID=Physo156705;Parent=Physo156705;rank=2 scaffold_25 . exon 62463 62631 . - . ID=Physo156705.2;Parent=Physo156705;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 62729 62791 . - 0 ID=Physo156705;Parent=Physo156705;rank=1 scaffold_25 . exon 62729 62791 . - . ID=Physo156705.1;Parent=Physo156705;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 74892 75768 . + . ID=Physo108697;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_250002;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 74892 75768 . + . ID=Physo108697;Parent=Physo108697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 74892 75768 . + . ID=Physo108697.1;Parent=Physo108697;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_25 . CDS 74894 75664 . + 0 ID=Physo108697;Parent=Physo108697;rank=1 scaffold_25 ensembl protein_coding_gene 71031 72782 . - . ID=Physo133262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250016;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 71031 72782 . - . ID=Physo133262;Parent=Physo133262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 71031 71074 . - 0 ID=Physo133262;Parent=Physo133262;rank=4 scaffold_25 . exon 71031 71074 . - . ID=Physo133262.4;Parent=Physo133262;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 71140 71542 . - 0 ID=Physo133262;Parent=Physo133262;rank=3 scaffold_25 . exon 71140 71542 . - . ID=Physo133262.3;Parent=Physo133262;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 71852 72612 . - 0 ID=Physo133262;Parent=Physo133262;rank=2 scaffold_25 . exon 71852 72612 . - . ID=Physo133262.2;Parent=Physo133262;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 72764 72782 . - 0 ID=Physo133262;Parent=Physo133262;rank=1 scaffold_25 . exon 72764 72782 . - . ID=Physo133262.1;Parent=Physo133262;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 74101 74702 . - . ID=Physo133263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250017;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 74101 74702 . - . ID=Physo133263;Parent=Physo133263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 74101 74147 . - 0 ID=Physo133263;Parent=Physo133263;rank=2 scaffold_25 . exon 74101 74147 . - . ID=Physo133263.2;Parent=Physo133263;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 74186 74702 . - 0 ID=Physo133263;Parent=Physo133263;rank=1 scaffold_25 . exon 74186 74702 . - . ID=Physo133263.1;Parent=Physo133263;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 75760 77237 . + . ID=Physo133265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250019;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 75760 77237 . + . ID=Physo133265;Parent=Physo133265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 75760 75774 . + 0 ID=Physo133265;Parent=Physo133265;rank=1 scaffold_25 . exon 75760 75774 . + . ID=Physo133265.1;Parent=Physo133265;constitutive=1;rank=1 scaffold_25 . CDS 75890 77053 . + 0 ID=Physo133265;Parent=Physo133265;rank=2 scaffold_25 . exon 75890 77053 . + . ID=Physo133265.2;Parent=Physo133265;constitutive=1;rank=2 scaffold_25 . CDS 77178 77237 . + 0 ID=Physo133265;Parent=Physo133265;rank=3 scaffold_25 . exon 77178 77237 . + . ID=Physo133265.3;Parent=Physo133265;constitutive=1;rank=3 scaffold_25 ensembl protein_coding_gene 78971 82826 . + . ID=Physo133266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250020;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 78971 82826 . + . ID=Physo133266;Parent=Physo133266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 78971 81901 . + 0 ID=Physo133266;Parent=Physo133266;rank=1 scaffold_25 . exon 78971 81901 . + . ID=Physo133266.1;Parent=Physo133266;constitutive=1;rank=1 scaffold_25 . CDS 82101 82826 . + 0 ID=Physo133266;Parent=Physo133266;rank=2 scaffold_25 . biological_region 79391 79391 0.999 - . logic_name=eponine scaffold_25 . biological_region 79625 79630 0.999 + . logic_name=eponine scaffold_25 . repeat_region 80853 80886 . ? . description=trf scaffold_25 . repeat_region 80853 80931 . ? . description=trf scaffold_25 . repeat_region 80858 80928 . ? . description=trf scaffold_25 . repeat_region 80869 80928 . ? . description=dust scaffold_25 . biological_region 81035 81036 0.999 + . logic_name=eponine scaffold_25 . biological_region 82080 82084 0.999 + . logic_name=eponine scaffold_25 . biological_region 82175 82175 0.999 + . logic_name=eponine scaffold_25 . biological_region 82195 82197 0.999 - . logic_name=eponine scaffold_25 . repeat_region 82198 82239 . ? . description=trf scaffold_25 . biological_region 82274 82281 0.999 + . logic_name=eponine scaffold_25 . biological_region 82471 82477 0.999 - . logic_name=eponine scaffold_25 . biological_region 82611 82611 0.999 + . logic_name=eponine scaffold_25 . biological_region 82702 82703 0.999 + . logic_name=eponine scaffold_25 . biological_region 82711 82712 0.999 + . logic_name=eponine scaffold_25 . biological_region 82726 82732 0.999 - . logic_name=eponine scaffold_25 . biological_region 84380 84381 0.999 + . logic_name=eponine scaffold_25 . biological_region 84398 84399 0.999 + . logic_name=eponine scaffold_25 . biological_region 84427 84431 0.999 + . logic_name=eponine scaffold_25 . biological_region 84483 84488 0.999 - . logic_name=eponine scaffold_25 . biological_region 84531 84536 0.999 - . logic_name=eponine scaffold_25 . biological_region 84536 84541 0.999 + . logic_name=eponine scaffold_25 . biological_region 84587 84590 0.999 + . logic_name=eponine scaffold_25 . biological_region 84609 84613 0.999 - . logic_name=eponine scaffold_25 . biological_region 84645 84646 0.999 - . logic_name=eponine scaffold_25 . repeat_region 84778 84785 . ? . description=dust scaffold_25 . biological_region 85014 85015 0.999 - . logic_name=eponine scaffold_25 . biological_region 85019 85021 0.999 + . logic_name=eponine scaffold_25 . biological_region 85131 85135 0.999 + . logic_name=eponine scaffold_25 . biological_region 85493 85493 0.999 - . logic_name=eponine scaffold_25 . repeat_region 86171 86178 . ? . description=dust scaffold_25 . biological_region 86257 86260 0.999 - . logic_name=eponine scaffold_25 . biological_region 86291 86296 0.999 + . logic_name=eponine scaffold_25 . biological_region 86308 86313 0.999 - . logic_name=eponine scaffold_25 . biological_region 86335 86344 0.999 - . logic_name=eponine scaffold_25 . biological_region 86365 86368 0.999 + . logic_name=eponine scaffold_25 . biological_region 86517 86520 0.999 - . logic_name=eponine scaffold_25 . biological_region 86573 86576 0.999 + . logic_name=eponine scaffold_25 . repeat_region 86618 86668 . ? . description=trf scaffold_25 . repeat_region 87003 87040 . ? . description=dust scaffold_25 . biological_region 87885 87887 0.999 + . logic_name=eponine scaffold_25 . biological_region 87940 87944 0.999 + . logic_name=eponine scaffold_25 . exon 82101 82826 . + . ID=Physo133266.2;Parent=Physo133266;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 83297 83848 . + . ID=Physo133267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250021;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 83297 83848 . + . ID=Physo133267;Parent=Physo133267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 83297 83353 . + 0 ID=Physo133267;Parent=Physo133267;rank=1 scaffold_25 . exon 83297 83353 . + . ID=Physo133267.1;Parent=Physo133267;constitutive=1;rank=1 scaffold_25 . CDS 83421 83581 . + 0 ID=Physo133267;Parent=Physo133267;rank=2 scaffold_25 . exon 83421 83581 . + . ID=Physo133267.2;Parent=Physo133267;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . CDS 83677 83848 . + 0 ID=Physo133267;Parent=Physo133267;rank=3 scaffold_25 . exon 83677 83848 . + . ID=Physo133267.3;Parent=Physo133267;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 ensembl protein_coding_gene 84234 85081 . - . ID=Physo133268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250022;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 84234 85081 . - . ID=Physo133268;Parent=Physo133268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 84234 84734 . - . ID=Physo133268.2;Parent=Physo133268;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_25 . CDS 84286 84734 . - 0 ID=Physo133268;Parent=Physo133268;rank=2 scaffold_25 . CDS 84859 85081 . - 0 ID=Physo133268;Parent=Physo133268;rank=1 scaffold_25 . exon 84859 85081 . - . ID=Physo133268.1;Parent=Physo133268;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 86189 89524 . + . ID=Physo133269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250023;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 86189 89524 . + . ID=Physo133269;Parent=Physo133269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 86189 89524 . + 0 ID=Physo133269;Parent=Physo133269;rank=1 scaffold_25 . exon 86189 89524 . + . ID=Physo133269.1;Parent=Physo133269;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 89830 91762 . + . ID=Physo133270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250024;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 89830 91762 . + . ID=Physo133270;Parent=Physo133270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 89830 89895 . + 0 ID=Physo133270;Parent=Physo133270;rank=1 scaffold_25 . exon 89830 89895 . + . ID=Physo133270.1;Parent=Physo133270;constitutive=1;rank=1 scaffold_25 . CDS 89924 91762 . + 0 ID=Physo133270;Parent=Physo133270;rank=2 scaffold_25 . exon 89924 91762 . + . ID=Physo133270.2;Parent=Physo133270;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 93867 95810 . + . ID=Physo133271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250025;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 93867 95810 . + . ID=Physo133271;Parent=Physo133271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 93867 95810 . + . ID=Physo133271.1;Parent=Physo133271;constitutive=1;ensembl_phase=-1;rank=1 scaffold_25 . CDS 93870 95810 . + 0 ID=Physo133271;Parent=Physo133271;rank=1 scaffold_25 . biological_region 105403 105408 0.999 + . logic_name=eponine scaffold_25 . biological_region 105465 105471 0.999 - . logic_name=eponine scaffold_25 . biological_region 106330 106331 0.999 + . logic_name=eponine scaffold_25 . biological_region 106383 106386 0.999 + . logic_name=eponine scaffold_25 . biological_region 106406 106414 0.999 + . logic_name=eponine scaffold_25 . biological_region 106475 106476 0.999 - . logic_name=eponine scaffold_25 . biological_region 106514 106521 0.999 - . logic_name=eponine scaffold_25 . repeat_region 107109 107129 . ? . description=dust scaffold_25 . repeat_region 107109 107129 . ? . description=trf scaffold_25 . biological_region 107397 107400 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 104129 105533 . - . ID=Physo133272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250026;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 104129 105533 . - . ID=Physo133272;Parent=Physo133272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 104129 104134 . - 0 ID=Physo133272;Parent=Physo133272;rank=2 scaffold_25 . exon 104129 104134 . - . ID=Physo133272.2;Parent=Physo133272;constitutive=1;rank=2 scaffold_25 . CDS 104208 105533 . - 0 ID=Physo133272;Parent=Physo133272;rank=1 scaffold_25 . exon 104208 105533 . - . ID=Physo133272.1;Parent=Physo133272;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 106332 108336 . + . ID=Physo133273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250027;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 106332 108336 . + . ID=Physo133273;Parent=Physo133273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 106332 107051 . + 0 ID=Physo133273;Parent=Physo133273;rank=1 scaffold_25 . exon 106332 107051 . + . ID=Physo133273.1;Parent=Physo133273;constitutive=1;rank=1 scaffold_25 . CDS 107149 108336 . + 0 ID=Physo133273;Parent=Physo133273;rank=2 scaffold_25 . exon 107149 108336 . + . ID=Physo133273.2;Parent=Physo133273;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 108581 110628 . + . ID=Physo133274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250028;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 108581 110628 . + . ID=Physo133274;Parent=Physo133274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 108581 110548 . + 0 ID=Physo133274;Parent=Physo133274;rank=1 scaffold_25 . exon 108581 110628 . + . ID=Physo133274.1;Parent=Physo133274;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_25 ensembl protein_coding_gene 116323 117757 . + . ID=Physo133275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250029;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 116323 117757 . + . ID=Physo133275;Parent=Physo133275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 116323 117600 . + 0 ID=Physo133275;Parent=Physo133275;rank=1 scaffold_25 . exon 116323 117757 . + . ID=Physo133275.1;Parent=Physo133275;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_25 . biological_region 120299 120304 0.999 + . logic_name=eponine scaffold_25 . biological_region 121291 121296 0.999 + . logic_name=eponine scaffold_25 . biological_region 122269 122272 0.999 + . logic_name=eponine scaffold_25 . biological_region 122377 122381 0.999 - . logic_name=eponine scaffold_25 . biological_region 122626 122627 0.999 - . logic_name=eponine scaffold_25 . biological_region 122635 122636 0.999 + . logic_name=eponine scaffold_25 . biological_region 122638 122646 0.999 - . logic_name=eponine scaffold_25 . biological_region 122679 122684 0.999 - . logic_name=eponine scaffold_25 . biological_region 122759 122763 0.999 - . logic_name=eponine scaffold_25 . biological_region 123875 123876 0.999 + . logic_name=eponine scaffold_25 . biological_region 124082 124083 0.999 - . logic_name=eponine scaffold_25 . biological_region 124158 124158 0.999 - . logic_name=eponine scaffold_25 . biological_region 125397 125399 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 119505 122729 . - . ID=Physo133276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250030;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 119505 122729 . - . ID=Physo133276;Parent=Physo133276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 119505 122729 . - 0 ID=Physo133276;Parent=Physo133276;rank=1 scaffold_25 . exon 119505 122729 . - . ID=Physo133276.1;Parent=Physo133276;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 123300 124255 . - . ID=Physo133277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250031;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 123300 124255 . - . ID=Physo133277;Parent=Physo133277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 123300 123470 . - 0 ID=Physo133277;Parent=Physo133277;rank=4 scaffold_25 . exon 123300 123470 . - . ID=Physo133277.4;Parent=Physo133277;constitutive=1;rank=4 scaffold_25 . CDS 123540 123617 . - 0 ID=Physo133277;Parent=Physo133277;rank=3 scaffold_25 . exon 123540 123617 . - . ID=Physo133277.3;Parent=Physo133277;constitutive=1;rank=3 scaffold_25 . CDS 123702 124104 . - 0 ID=Physo133277;Parent=Physo133277;rank=2 scaffold_25 . exon 123702 124104 . - . ID=Physo133277.2;Parent=Physo133277;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 124179 124255 . - 0 ID=Physo133277;Parent=Physo133277;rank=1 scaffold_25 . exon 124179 124255 . - . ID=Physo133277.1;Parent=Physo133277;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 124833 125885 . + . ID=Physo133278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250032;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 124833 125885 . + . ID=Physo133278;Parent=Physo133278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 124833 124894 . + 0 ID=Physo133278;Parent=Physo133278;rank=1 scaffold_25 . exon 124833 124894 . + . ID=Physo133278.1;Parent=Physo133278;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 124974 125139 . + 0 ID=Physo133278;Parent=Physo133278;rank=2 scaffold_25 . exon 124974 125139 . + . ID=Physo133278.2;Parent=Physo133278;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 125408 125509 . + 0 ID=Physo133278;Parent=Physo133278;rank=3 scaffold_25 . exon 125408 125509 . + . ID=Physo133278.3;Parent=Physo133278;constitutive=1;rank=3 scaffold_25 . CDS 125569 125646 . + 0 ID=Physo133278;Parent=Physo133278;rank=4 scaffold_25 . exon 125569 125646 . + . ID=Physo133278.4;Parent=Physo133278;constitutive=1;rank=4 scaffold_25 . CDS 125727 125885 . + 0 ID=Physo133278;Parent=Physo133278;rank=5 scaffold_25 . exon 125727 125885 . + . ID=Physo133278.5;Parent=Physo133278;constitutive=1;rank=5 scaffold_25 ensembl protein_coding_gene 125961 129223 . - . ID=Physo133279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250033;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 125961 129223 . - . ID=Physo133279;Parent=Physo133279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 125961 126002 . - 0 ID=Physo133279;Parent=Physo133279;rank=2 scaffold_25 . exon 125961 126002 . - . ID=Physo133279.2;Parent=Physo133279;constitutive=1;rank=2 scaffold_25 . CDS 126122 129223 . - 0 ID=Physo133279;Parent=Physo133279;rank=1 scaffold_25 . exon 126122 129223 . - . ID=Physo133279.1;Parent=Physo133279;constitutive=1;rank=1 scaffold_25 . repeat_region 131373 131392 . ? . description=trf scaffold_25 . repeat_region 138346 138353 . ? . description=dust scaffold_25 ensembl protein_coding_gene 133635 135268 . - . ID=Physo133280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250034;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 133635 135268 . - . ID=Physo133280;Parent=Physo133280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 133635 133649 . - 0 ID=Physo133280;Parent=Physo133280;rank=2 scaffold_25 . exon 133635 133649 . - . ID=Physo133280.2;Parent=Physo133280;constitutive=1;rank=2 scaffold_25 . CDS 133700 135268 . - 0 ID=Physo133280;Parent=Physo133280;rank=1 scaffold_25 . exon 133700 135268 . - . ID=Physo133280.1;Parent=Physo133280;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 135429 138052 . + . ID=Physo133281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250035;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 135429 138052 . + . ID=Physo133281;Parent=Physo133281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 135429 135616 . + 0 ID=Physo133281;Parent=Physo133281;rank=1 scaffold_25 . exon 135429 135616 . + . ID=Physo133281.1;Parent=Physo133281;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 135690 135761 . + 0 ID=Physo133281;Parent=Physo133281;rank=2 scaffold_25 . exon 135690 135761 . + . ID=Physo133281.2;Parent=Physo133281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_25 . CDS 135840 135905 . + 0 ID=Physo133281;Parent=Physo133281;rank=3 scaffold_25 . exon 135840 135905 . + . ID=Physo133281.3;Parent=Physo133281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_25 . CDS 135974 136099 . + 0 ID=Physo133281;Parent=Physo133281;rank=4 scaffold_25 . exon 135974 136099 . + . ID=Physo133281.4;Parent=Physo133281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_25 . CDS 136307 136378 . + 0 ID=Physo133281;Parent=Physo133281;rank=5 scaffold_25 . exon 136307 136378 . + . ID=Physo133281.5;Parent=Physo133281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_25 . CDS 136598 136764 . + 0 ID=Physo133281;Parent=Physo133281;rank=6 scaffold_25 . exon 136598 136764 . + . ID=Physo133281.6;Parent=Physo133281;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_25 . CDS 136830 136868 . + 0 ID=Physo133281;Parent=Physo133281;rank=7 scaffold_25 . exon 136830 136868 . + . ID=Physo133281.7;Parent=Physo133281;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_25 . CDS 136953 138052 . + 0 ID=Physo133281;Parent=Physo133281;rank=8 scaffold_25 . exon 136953 138052 . + . ID=Physo133281.8;Parent=Physo133281;constitutive=1;ensembl_phase=1;rank=8 scaffold_25 . biological_region 141716 141716 0.999 - . logic_name=eponine scaffold_25 . biological_region 141853 141857 0.999 - . logic_name=eponine scaffold_25 . biological_region 141873 141874 0.999 - . logic_name=eponine scaffold_25 . biological_region 141919 141922 0.999 - . logic_name=eponine scaffold_25 . biological_region 141937 141943 0.999 - . logic_name=eponine scaffold_25 . biological_region 142160 142164 0.999 + . logic_name=eponine scaffold_25 . biological_region 143437 143438 0.999 + . logic_name=eponine scaffold_25 . biological_region 146391 146391 0.999 + . logic_name=eponine scaffold_25 . biological_region 146793 146794 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 146148 147198 . - . ID=Physo108698;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_250003;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 146148 147198 . - . ID=Physo108698;Parent=Physo108698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 146148 147176 . - 0 ID=Physo108698;Parent=Physo108698;rank=1 scaffold_25 . exon 146148 147198 . - . ID=Physo108698.1;Parent=Physo108698;constitutive=1;ensembl_phase=-1;rank=1 scaffold_25 ensembl protein_coding_gene 141425 142463 . + . ID=Physo115348;biotype=protein_coding;external_name=estExt_Genewise1.C_250054;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 141425 142463 . + . ID=Physo115348;Parent=Physo115348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 141425 141439 . + . ID=Physo115348.1;Parent=Physo115348;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_25 . exon 141530 141905 . + . ID=Physo115348.2;Parent=Physo115348;constitutive=1;ensembl_phase=-1;rank=2 scaffold_25 . CDS 141585 141905 . + 0 ID=Physo115348;Parent=Physo115348;rank=1 scaffold_25 . CDS 142044 142102 . + 0 ID=Physo115348;Parent=Physo115348;rank=2 scaffold_25 . exon 142044 142102 . + . ID=Physo115348.3;Parent=Physo115348;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 142205 142463 . + 0 ID=Physo115348;Parent=Physo115348;rank=3 scaffold_25 . exon 142205 142463 . + . ID=Physo115348.4;Parent=Physo115348;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 ensembl protein_coding_gene 142985 145791 . - . ID=Physo133283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250037;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 142985 145791 . - . ID=Physo133283;Parent=Physo133283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 142985 144312 . - 0 ID=Physo133283;Parent=Physo133283;rank=6 scaffold_25 . exon 142985 144312 . - . ID=Physo133283.6;Parent=Physo133283;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 144382 144563 . - 0 ID=Physo133283;Parent=Physo133283;rank=5 scaffold_25 . exon 144382 144563 . - . ID=Physo133283.5;Parent=Physo133283;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_25 . CDS 144921 144986 . - 0 ID=Physo133283;Parent=Physo133283;rank=4 scaffold_25 . exon 144921 144986 . - . ID=Physo133283.4;Parent=Physo133283;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_25 . CDS 145063 145168 . - 0 ID=Physo133283;Parent=Physo133283;rank=3 scaffold_25 . exon 145063 145168 . - . ID=Physo133283.3;Parent=Physo133283;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_25 . CDS 145333 145469 . - 0 ID=Physo133283;Parent=Physo133283;rank=2 scaffold_25 . exon 145333 145469 . - . ID=Physo133283.2;Parent=Physo133283;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 145550 145791 . - 0 ID=Physo133283;Parent=Physo133283;rank=1 scaffold_25 . exon 145550 145791 . - . ID=Physo133283.1;Parent=Physo133283;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . repeat_region 152089 152149 . ? . description=dust scaffold_25 . repeat_region 153411 153418 . ? . description=dust scaffold_25 . repeat_region 154155 154209 . ? . description=trf scaffold_25 . repeat_region 154211 154291 . ? . description=trf scaffold_25 . repeat_region 154259 154316 . ? . description=trf scaffold_25 . repeat_region 155222 155229 . ? . description=dust scaffold_25 . repeat_region 156416 156440 . ? . description=trf scaffold_25 . repeat_region 156416 156444 . ? . description=dust scaffold_25 . repeat_region 156966 157042 . ? . description=trf scaffold_25 . repeat_region 157022 157152 . ? . description=trf scaffold_25 ensembl protein_coding_gene 148253 148781 . + . ID=Physo133285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250039;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 148253 148781 . + . ID=Physo133285;Parent=Physo133285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 148253 148498 . + 0 ID=Physo133285;Parent=Physo133285;rank=1 scaffold_25 . exon 148253 148498 . + . ID=Physo133285.1;Parent=Physo133285;constitutive=1;rank=1 scaffold_25 . CDS 148625 148640 . + 0 ID=Physo133285;Parent=Physo133285;rank=2 scaffold_25 . exon 148625 148640 . + . ID=Physo133285.2;Parent=Physo133285;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 148720 148781 . + 0 ID=Physo133285;Parent=Physo133285;rank=3 scaffold_25 . exon 148720 148781 . + . ID=Physo133285.3;Parent=Physo133285;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 ensembl protein_coding_gene 149779 151059 . + . ID=Physo133286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250040;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 149779 151059 . + . ID=Physo133286;Parent=Physo133286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 149779 151059 . + 0 ID=Physo133286;Parent=Physo133286;rank=1 scaffold_25 . exon 149779 151059 . + . ID=Physo133286.1;Parent=Physo133286;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 153488 154468 . + . ID=Physo133287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250041;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 153488 154468 . + . ID=Physo133287;Parent=Physo133287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 153488 154468 . + 0 ID=Physo133287;Parent=Physo133287;rank=1 scaffold_25 . exon 153488 154468 . + . ID=Physo133287.1;Parent=Physo133287;constitutive=1;rank=1 scaffold_25 . biological_region 166115 166117 0.999 + . logic_name=eponine scaffold_25 . biological_region 166416 166418 0.999 + . logic_name=eponine scaffold_25 . biological_region 166572 166573 0.999 + . logic_name=eponine scaffold_25 . biological_region 166642 166646 0.999 - . logic_name=eponine scaffold_25 . biological_region 166703 166706 0.999 + . logic_name=eponine scaffold_25 . biological_region 166792 166795 0.999 - . logic_name=eponine scaffold_25 . biological_region 167150 167152 0.999 + . logic_name=eponine scaffold_25 . biological_region 167237 167239 0.999 + . logic_name=eponine scaffold_25 . biological_region 167261 167269 0.999 + . logic_name=eponine scaffold_25 . biological_region 167286 167287 0.999 + . logic_name=eponine scaffold_25 . biological_region 167400 167405 0.999 + . logic_name=eponine scaffold_25 . biological_region 167407 167409 0.999 - . logic_name=eponine scaffold_25 . biological_region 167456 167462 0.999 - . logic_name=eponine scaffold_25 . biological_region 167542 167544 0.999 + . logic_name=eponine scaffold_25 . biological_region 167699 167704 0.999 + . logic_name=eponine scaffold_25 . biological_region 167803 167808 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 167037 171311 . + . ID=Physo133288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250042;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 167037 171311 . + . ID=Physo133288;Parent=Physo133288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 167037 171311 . + 0 ID=Physo133288;Parent=Physo133288;rank=1 scaffold_25 . exon 167037 171311 . + . ID=Physo133288.1;Parent=Physo133288;constitutive=1;rank=1 scaffold_25 . repeat_region 171327 171335 . ? . description=dust scaffold_25 ensembl protein_coding_gene 171824 173415 . + . ID=Physo133289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250043;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 171824 173415 . + . ID=Physo133289;Parent=Physo133289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 171824 172234 . + 0 ID=Physo133289;Parent=Physo133289;rank=1 scaffold_25 . exon 171824 172234 . + . ID=Physo133289.1;Parent=Physo133289;constitutive=1;rank=1 scaffold_25 . CDS 172305 173230 . + 0 ID=Physo133289;Parent=Physo133289;rank=2 scaffold_25 . exon 172305 173230 . + . ID=Physo133289.2;Parent=Physo133289;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . CDS 173314 173382 . + 0 ID=Physo133289;Parent=Physo133289;rank=3 scaffold_25 . exon 173314 173382 . + . ID=Physo133289.3;Parent=Physo133289;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_25 . CDS 173412 173415 . + 0 ID=Physo133289;Parent=Physo133289;rank=4 scaffold_25 . exon 173412 173415 . + . ID=Physo133289.4;Parent=Physo133289;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . repeat_region 179839 181154 . + . description=GypsyPi-1c_I-int scaffold_25 . repeat_region 181205 181520 . ? . description=trf scaffold_25 . biological_region 181769 181772 0.999 + . logic_name=eponine scaffold_25 . biological_region 181883 181885 0.999 + . logic_name=eponine scaffold_25 . repeat_region 181933 184890 . + . description=GypsyPi-1c_I-int scaffold_25 . repeat_region 184941 184981 . ? . description=trf scaffold_25 . repeat_region 185390 185524 . + . description=GypsyPi-1c_I-int scaffold_25 . biological_region 185668 185670 0.999 + . logic_name=eponine scaffold_25 . biological_region 186393 186405 0.999 + . logic_name=eponine scaffold_25 . biological_region 186485 186489 0.999 + . logic_name=eponine scaffold_25 . biological_region 186510 186510 0.999 + . logic_name=eponine scaffold_25 . biological_region 186518 186522 0.999 - . logic_name=eponine scaffold_25 . biological_region 186529 186537 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 179623 180625 . + . ID=Physo133290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250044;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 179623 180625 . + . ID=Physo133290;Parent=Physo133290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 179623 179902 . + 0 ID=Physo133290;Parent=Physo133290;rank=1 scaffold_25 . exon 179623 179902 . + . ID=Physo133290.1;Parent=Physo133290;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 179952 180625 . + 0 ID=Physo133290;Parent=Physo133290;rank=2 scaffold_25 . exon 179952 180625 . + . ID=Physo133290.2;Parent=Physo133290;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 ensembl protein_coding_gene 181543 183057 . + . ID=Physo133291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250045;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 181543 183057 . + . ID=Physo133291;Parent=Physo133291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 181543 183057 . + 0 ID=Physo133291;Parent=Physo133291;rank=1 scaffold_25 . exon 181543 183057 . + . ID=Physo133291.1;Parent=Physo133291;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 185702 186691 . - . ID=Physo133292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250046;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 185702 186691 . - . ID=Physo133292;Parent=Physo133292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 185702 186691 . - 0 ID=Physo133292;Parent=Physo133292;rank=1 scaffold_25 . exon 185702 186691 . - . ID=Physo133292.1;Parent=Physo133292;constitutive=1;rank=1 scaffold_25 . repeat_region 191027 191076 . ? . description=dust scaffold_25 . repeat_region 192147 192157 . ? . description=dust scaffold_25 . repeat_region 192681 192691 . ? . description=dust scaffold_25 . repeat_region 193527 194308 . ? . description=dust scaffold_25 . repeat_region 198552 198611 . ? . description=trf scaffold_25 . biological_region 204321 204324 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 202488 202910 . - . ID=Physo133293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250047;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 202488 202910 . - . ID=Physo133293;Parent=Physo133293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 202488 202753 . - . ID=Physo133293.2;Parent=Physo133293;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_25 . CDS 202533 202753 . - 0 ID=Physo133293;Parent=Physo133293;rank=2 scaffold_25 . CDS 202790 202910 . - 0 ID=Physo133293;Parent=Physo133293;rank=1 scaffold_25 . exon 202790 202910 . - . ID=Physo133293.1;Parent=Physo133293;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 204886 205857 . - . ID=Physo133294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250048;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 204886 205857 . - . ID=Physo133294;Parent=Physo133294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 204886 205857 . - 0 ID=Physo133294;Parent=Physo133294;rank=1 scaffold_25 . exon 204886 205857 . - . ID=Physo133294.1;Parent=Physo133294;constitutive=1;rank=1 scaffold_25 . repeat_region 210015 210022 . ? . description=dust scaffold_25 . repeat_region 211753 211761 . ? . description=dust scaffold_25 ensembl protein_coding_gene 208155 209219 . + . ID=Physo133295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250049;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 208155 209219 . + . ID=Physo133295;Parent=Physo133295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 208155 208973 . + 0 ID=Physo133295;Parent=Physo133295;rank=1 scaffold_25 . exon 208155 208973 . + . ID=Physo133295.1;Parent=Physo133295;constitutive=1;rank=1 scaffold_25 . CDS 209025 209219 . + 0 ID=Physo133295;Parent=Physo133295;rank=2 scaffold_25 . exon 209025 209219 . + . ID=Physo133295.2;Parent=Physo133295;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 211068 213376 . + . ID=Physo133296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250050;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 211068 213376 . + . ID=Physo133296;Parent=Physo133296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 211068 211722 . + 0 ID=Physo133296;Parent=Physo133296;rank=1 scaffold_25 . exon 211068 211722 . + . ID=Physo133296.1;Parent=Physo133296;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 211980 212107 . + 0 ID=Physo133296;Parent=Physo133296;rank=2 scaffold_25 . exon 211980 212107 . + . ID=Physo133296.2;Parent=Physo133296;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 212363 212714 . + 0 ID=Physo133296;Parent=Physo133296;rank=3 scaffold_25 . exon 212363 212714 . + . ID=Physo133296.3;Parent=Physo133296;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_25 . CDS 212823 213376 . + 0 ID=Physo133296;Parent=Physo133296;rank=4 scaffold_25 . exon 212823 213376 . + . ID=Physo133296.4;Parent=Physo133296;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 ensembl protein_coding_gene 214393 219434 . + . ID=Physo133297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250051;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 214393 219434 . + . ID=Physo133297;Parent=Physo133297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 214393 216570 . + 0 ID=Physo133297;Parent=Physo133297;rank=1 scaffold_25 . exon 214393 216570 . + . ID=Physo133297.1;Parent=Physo133297;constitutive=1;rank=1 scaffold_25 . CDS 216708 218913 . + 0 ID=Physo133297;Parent=Physo133297;rank=2 scaffold_25 . exon 216708 218913 . + . ID=Physo133297.2;Parent=Physo133297;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 219145 219434 . + 0 ID=Physo133297;Parent=Physo133297;rank=3 scaffold_25 . repeat_region 221244 221267 . ? . description=trf scaffold_25 . repeat_region 221264 221321 . ? . description=trf scaffold_25 . repeat_region 221264 221321 . ? . description=trf scaffold_25 . biological_region 223677 223684 0.999 + . logic_name=eponine scaffold_25 . repeat_region 224312 224407 . ? . description=trf scaffold_25 . biological_region 224767 224773 0.999 - . logic_name=eponine scaffold_25 . biological_region 224823 224827 0.999 + . logic_name=eponine scaffold_25 . repeat_region 227262 227327 . ? . description=trf scaffold_25 . exon 219145 219434 . + . ID=Physo133297.3;Parent=Physo133297;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 ensembl protein_coding_gene 219587 224132 . - . ID=Physo133298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250052;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 219587 224132 . - . ID=Physo133298;Parent=Physo133298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 219587 219715 . - 0 ID=Physo133298;Parent=Physo133298;rank=5 scaffold_25 . exon 219587 219715 . - . ID=Physo133298.5;Parent=Physo133298;constitutive=1;rank=5 scaffold_25 . CDS 219919 220470 . - 0 ID=Physo133298;Parent=Physo133298;rank=4 scaffold_25 . exon 219919 220470 . - . ID=Physo133298.4;Parent=Physo133298;constitutive=1;rank=4 scaffold_25 . CDS 220538 220939 . - 0 ID=Physo133298;Parent=Physo133298;rank=3 scaffold_25 . exon 220538 220939 . - . ID=Physo133298.3;Parent=Physo133298;constitutive=1;rank=3 scaffold_25 . CDS 220985 224032 . - 0 ID=Physo133298;Parent=Physo133298;rank=2 scaffold_25 . exon 220985 224032 . - . ID=Physo133298.2;Parent=Physo133298;constitutive=1;rank=2 scaffold_25 . CDS 224100 224132 . - 0 ID=Physo133298;Parent=Physo133298;rank=1 scaffold_25 . exon 224100 224132 . - . ID=Physo133298.1;Parent=Physo133298;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 225116 226519 . + . ID=Physo133299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250053;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 225116 226519 . + . ID=Physo133299;Parent=Physo133299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 225116 225449 . + 0 ID=Physo133299;Parent=Physo133299;rank=1 scaffold_25 . exon 225116 225449 . + . ID=Physo133299.1;Parent=Physo133299;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 225518 225564 . + 0 ID=Physo133299;Parent=Physo133299;rank=2 scaffold_25 . exon 225518 225564 . + . ID=Physo133299.2;Parent=Physo133299;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 225640 225837 . + 0 ID=Physo133299;Parent=Physo133299;rank=3 scaffold_25 . exon 225640 225837 . + . ID=Physo133299.3;Parent=Physo133299;constitutive=1;rank=3 scaffold_25 . CDS 226065 226171 . + 0 ID=Physo133299;Parent=Physo133299;rank=4 scaffold_25 . exon 226065 226171 . + . ID=Physo133299.4;Parent=Physo133299;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_25 . CDS 226234 226519 . + 0 ID=Physo133299;Parent=Physo133299;rank=5 scaffold_25 . exon 226234 226519 . + . ID=Physo133299.5;Parent=Physo133299;constitutive=1;ensembl_phase=2;rank=5 scaffold_25 . repeat_region 228306 228313 . ? . description=dust scaffold_25 . repeat_region 231628 231642 . ? . description=dust scaffold_25 . repeat_region 234178 234186 . ? . description=dust scaffold_25 ensembl protein_coding_gene 234272 236645 . - . ID=Physo133300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250054;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 234272 236645 . - . ID=Physo133300;Parent=Physo133300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 234272 234823 . - 0 ID=Physo133300;Parent=Physo133300;rank=7 scaffold_25 . exon 234272 234823 . - . ID=Physo133300.7;Parent=Physo133300;constitutive=1;rank=7 scaffold_25 . CDS 234992 235025 . - 0 ID=Physo133300;Parent=Physo133300;rank=6 scaffold_25 . exon 234992 235025 . - . ID=Physo133300.6;Parent=Physo133300;constitutive=1;ensembl_phase=2;rank=6 scaffold_25 . CDS 235107 235175 . - 0 ID=Physo133300;Parent=Physo133300;rank=5 scaffold_25 . exon 235107 235175 . - . ID=Physo133300.5;Parent=Physo133300;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_25 . CDS 235246 235391 . - 0 ID=Physo133300;Parent=Physo133300;rank=4 scaffold_25 . exon 235246 235391 . - . ID=Physo133300.4;Parent=Physo133300;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_25 . CDS 235540 235554 . - 0 ID=Physo133300;Parent=Physo133300;rank=3 scaffold_25 . exon 235540 235554 . - . ID=Physo133300.3;Parent=Physo133300;constitutive=1;rank=3 scaffold_25 . CDS 235662 235871 . - 0 ID=Physo133300;Parent=Physo133300;rank=2 scaffold_25 . exon 235662 235871 . - . ID=Physo133300.2;Parent=Physo133300;constitutive=1;rank=2 scaffold_25 . CDS 236262 236645 . - 0 ID=Physo133300;Parent=Physo133300;rank=1 scaffold_25 . exon 236262 236645 . - . ID=Physo133300.1;Parent=Physo133300;constitutive=1;rank=1 scaffold_25 . repeat_region 244293 244347 . ? . description=trf scaffold_25 . biological_region 244569 244577 0.999 - . logic_name=eponine scaffold_25 . biological_region 244868 244869 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 238779 244581 . - . ID=Physo133301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250055;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 238779 244581 . - . ID=Physo133301;Parent=Physo133301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 238779 238814 . - 0 ID=Physo133301;Parent=Physo133301;rank=9 scaffold_25 . exon 238779 238814 . - . ID=Physo133301.9;Parent=Physo133301;constitutive=1;rank=9 scaffold_25 . CDS 238840 238944 . - 0 ID=Physo133301;Parent=Physo133301;rank=8 scaffold_25 . exon 238840 238944 . - . ID=Physo133301.8;Parent=Physo133301;constitutive=1;rank=8 scaffold_25 . CDS 239014 239412 . - 0 ID=Physo133301;Parent=Physo133301;rank=7 scaffold_25 . exon 239014 239412 . - . ID=Physo133301.7;Parent=Physo133301;constitutive=1;rank=7 scaffold_25 . CDS 239990 240055 . - 0 ID=Physo133301;Parent=Physo133301;rank=6 scaffold_25 . exon 239990 240055 . - . ID=Physo133301.6;Parent=Physo133301;constitutive=1;rank=6 scaffold_25 . CDS 240135 243306 . - 0 ID=Physo133301;Parent=Physo133301;rank=5 scaffold_25 . exon 240135 243306 . - . ID=Physo133301.5;Parent=Physo133301;constitutive=1;ensembl_phase=2;rank=5 scaffold_25 . CDS 243373 243923 . - 0 ID=Physo133301;Parent=Physo133301;rank=4 scaffold_25 . exon 243373 243923 . - . ID=Physo133301.4;Parent=Physo133301;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_25 . CDS 244006 244146 . - 0 ID=Physo133301;Parent=Physo133301;rank=3 scaffold_25 . exon 244006 244146 . - . ID=Physo133301.3;Parent=Physo133301;constitutive=1;rank=3 scaffold_25 . CDS 244230 244412 . - 0 ID=Physo133301;Parent=Physo133301;rank=2 scaffold_25 . exon 244230 244412 . - . ID=Physo133301.2;Parent=Physo133301;constitutive=1;rank=2 scaffold_25 . CDS 244486 244581 . - 0 ID=Physo133301;Parent=Physo133301;rank=1 scaffold_25 . exon 244486 244581 . - . ID=Physo133301.1;Parent=Physo133301;constitutive=1;rank=1 scaffold_25 . repeat_region 247954 247962 . ? . description=dust scaffold_25 . repeat_region 248228 248247 . ? . description=dust scaffold_25 . repeat_region 255038 255087 . ? . description=dust scaffold_25 . repeat_region 256075 256124 . ? . description=dust scaffold_25 ensembl protein_coding_gene 248278 251832 . - . ID=Physo133303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250057;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 248278 251832 . - . ID=Physo133303;Parent=Physo133303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 248278 248430 . - 0 ID=Physo133303;Parent=Physo133303;rank=2 scaffold_25 . exon 248278 248430 . - . ID=Physo133303.2;Parent=Physo133303;constitutive=1;rank=2 scaffold_25 . CDS 250471 251832 . - 0 ID=Physo133303;Parent=Physo133303;rank=1 scaffold_25 . exon 250471 251832 . - . ID=Physo133303.1;Parent=Physo133303;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 252492 254160 . - . ID=Physo133304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250058;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 252492 254160 . - . ID=Physo133304;Parent=Physo133304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 252492 254160 . - . ID=Physo133304.1;Parent=Physo133304;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_25 . CDS 252607 254160 . - 0 ID=Physo133304;Parent=Physo133304;rank=1 scaffold_25 ensembl protein_coding_gene 254855 255926 . - . ID=Physo133305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250059;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 254855 255926 . - . ID=Physo133305;Parent=Physo133305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 254855 255006 . - 0 ID=Physo133305;Parent=Physo133305;rank=3 scaffold_25 . exon 254855 255006 . - . ID=Physo133305.3;Parent=Physo133305;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 255392 255535 . - 0 ID=Physo133305;Parent=Physo133305;rank=2 scaffold_25 . exon 255392 255535 . - . ID=Physo133305.2;Parent=Physo133305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 255791 255926 . - 0 ID=Physo133305;Parent=Physo133305;rank=1 scaffold_25 . exon 255791 255926 . - . ID=Physo133305.1;Parent=Physo133305;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . biological_region 258133 258137 0.999 + . logic_name=eponine scaffold_25 . biological_region 258140 258144 0.999 + . logic_name=eponine scaffold_25 . repeat_region 259595 259658 . ? . description=trf scaffold_25 . repeat_region 259728 259808 . ? . description=trf scaffold_25 . repeat_region 260304 260415 . ? . description=trf scaffold_25 . repeat_region 260415 260457 . ? . description=trf scaffold_25 . repeat_region 263766 263913 . ? . description=trf scaffold_25 ensembl protein_coding_gene 264388 265043 . - . ID=Physo133306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250060;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 264388 265043 . - . ID=Physo133306;Parent=Physo133306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 264388 264655 . - 0 ID=Physo133306;Parent=Physo133306;rank=2 scaffold_25 . exon 264388 264655 . - . ID=Physo133306.2;Parent=Physo133306;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 264703 265043 . - 0 ID=Physo133306;Parent=Physo133306;rank=1 scaffold_25 . exon 264703 265043 . - . ID=Physo133306.1;Parent=Physo133306;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . repeat_region 269805 269812 . ? . description=dust scaffold_25 ensembl protein_coding_gene 269093 270147 . + . ID=Physo133307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250061;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 269093 270147 . + . ID=Physo133307;Parent=Physo133307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 269093 269340 . + 0 ID=Physo133307;Parent=Physo133307;rank=1 scaffold_25 . exon 269093 269340 . + . ID=Physo133307.1;Parent=Physo133307;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 269424 270147 . + 0 ID=Physo133307;Parent=Physo133307;rank=2 scaffold_25 . exon 269424 270147 . + . ID=Physo133307.2;Parent=Physo133307;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 ensembl protein_coding_gene 270251 272755 . - . ID=Physo133308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250062;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 270251 272755 . - . ID=Physo133308;Parent=Physo133308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 270251 272755 . - 0 ID=Physo133308;Parent=Physo133308;rank=1 scaffold_25 . exon 270251 272755 . - . ID=Physo133308.1;Parent=Physo133308;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 273114 274933 . + . ID=Physo133309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250063;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 273114 274933 . + . ID=Physo133309;Parent=Physo133309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 273114 273521 . + 0 ID=Physo133309;Parent=Physo133309;rank=1 scaffold_25 . exon 273114 273521 . + . ID=Physo133309.1;Parent=Physo133309;constitutive=1;rank=1 scaffold_25 . CDS 273580 273704 . + 0 ID=Physo133309;Parent=Physo133309;rank=2 scaffold_25 . exon 273580 273704 . + . ID=Physo133309.2;Parent=Physo133309;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . CDS 273777 273984 . + 0 ID=Physo133309;Parent=Physo133309;rank=3 scaffold_25 . exon 273777 273984 . + . ID=Physo133309.3;Parent=Physo133309;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 274052 274933 . + 0 ID=Physo133309;Parent=Physo133309;rank=4 scaffold_25 . exon 274052 274933 . + . ID=Physo133309.4;Parent=Physo133309;constitutive=1;rank=4 scaffold_25 ensembl protein_coding_gene 275248 276358 . - . ID=Physo133310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250064;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 275248 276358 . - . ID=Physo133310;Parent=Physo133310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 275248 275891 . - 0 ID=Physo133310;Parent=Physo133310;rank=3 scaffold_25 . exon 275248 275891 . - . ID=Physo133310.3;Parent=Physo133310;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 275961 276144 . - 0 ID=Physo133310;Parent=Physo133310;rank=2 scaffold_25 . exon 275961 276144 . - . ID=Physo133310.2;Parent=Physo133310;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 276215 276358 . - 0 ID=Physo133310;Parent=Physo133310;rank=1 scaffold_25 . exon 276215 276358 . - . ID=Physo133310.1;Parent=Physo133310;constitutive=1;rank=1 scaffold_25 . repeat_region 279828 279847 . ? . description=trf scaffold_25 ensembl protein_coding_gene 281984 282616 . - . ID=Physo133311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250065;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 281984 282616 . - . ID=Physo133311;Parent=Physo133311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 281984 282616 . - 0 ID=Physo133311;Parent=Physo133311;rank=1 scaffold_25 . exon 281984 282616 . - . ID=Physo133311.1;Parent=Physo133311;constitutive=1;rank=1 scaffold_25 . repeat_region 289042 292780 . ? . description=dust scaffold_25 . repeat_region 292781 299133 . ? . description=dust scaffold_25 . biological_region 300665 300669 0.999 + . logic_name=eponine scaffold_25 . repeat_region 302923 302954 . ? . description=trf scaffold_25 . repeat_region 302923 302957 . ? . description=trf scaffold_25 . repeat_region 306164 306209 . ? . description=trf scaffold_25 ensembl protein_coding_gene 302687 305310 . + . ID=Physo156708;biotype=protein_coding;external_name=C_scaffold_25000014;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 302687 305310 . + . ID=Physo156708;Parent=Physo156708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 302687 302713 . + 0 ID=Physo156708;Parent=Physo156708;rank=1 scaffold_25 . exon 302687 302713 . + . ID=Physo156708.1;Parent=Physo156708;constitutive=1;rank=1 scaffold_25 . CDS 302791 303174 . + 0 ID=Physo156708;Parent=Physo156708;rank=2 scaffold_25 . exon 302791 303174 . + . ID=Physo156708.2;Parent=Physo156708;constitutive=1;rank=2 scaffold_25 . CDS 303254 303354 . + 0 ID=Physo156708;Parent=Physo156708;rank=3 scaffold_25 . exon 303254 303354 . + . ID=Physo156708.3;Parent=Physo156708;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 303429 303537 . + 0 ID=Physo156708;Parent=Physo156708;rank=4 scaffold_25 . exon 303429 303537 . + . ID=Physo156708.4;Parent=Physo156708;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 303609 303664 . + 0 ID=Physo156708;Parent=Physo156708;rank=5 scaffold_25 . exon 303609 303664 . + . ID=Physo156708.5;Parent=Physo156708;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_25 . CDS 303743 303778 . + 0 ID=Physo156708;Parent=Physo156708;rank=6 scaffold_25 . exon 303743 303778 . + . ID=Physo156708.6;Parent=Physo156708;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_25 . CDS 303846 303927 . + 0 ID=Physo156708;Parent=Physo156708;rank=7 scaffold_25 . exon 303846 303927 . + . ID=Physo156708.7;Parent=Physo156708;constitutive=1;ensembl_phase=2;rank=7 scaffold_25 . CDS 304450 304532 . + 0 ID=Physo156708;Parent=Physo156708;rank=8 scaffold_25 . exon 304450 304532 . + . ID=Physo156708.8;Parent=Physo156708;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_25 . CDS 304680 305014 . + 0 ID=Physo156708;Parent=Physo156708;rank=9 scaffold_25 . exon 304680 305014 . + . ID=Physo156708.9;Parent=Physo156708;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_25 . CDS 305090 305194 . + 0 ID=Physo156708;Parent=Physo156708;rank=10 scaffold_25 . exon 305090 305194 . + . ID=Physo156708.10;Parent=Physo156708;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_25 . CDS 305264 305310 . + 0 ID=Physo156708;Parent=Physo156708;rank=11 scaffold_25 . exon 305264 305310 . + . ID=Physo156708.11;Parent=Physo156708;constitutive=1;ensembl_phase=1;rank=11 scaffold_25 . repeat_region 306369 306377 . ? . description=dust scaffold_25 . repeat_region 308503 308518 . ? . description=dust scaffold_25 . repeat_region 309226 309234 . ? . description=dust scaffold_25 . repeat_region 314660 314667 . ? . description=dust scaffold_25 . repeat_region 314778 314785 . ? . description=dust scaffold_25 ensembl protein_coding_gene 306694 307590 . + . ID=Physo133313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250067;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 306694 307590 . + . ID=Physo133313;Parent=Physo133313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 306694 307590 . + 0 ID=Physo133313;Parent=Physo133313;rank=1 scaffold_25 . exon 306694 307590 . + . ID=Physo133313.1;Parent=Physo133313;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 317756 319775 . + . ID=Physo133314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250068;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 317756 319775 . + . ID=Physo133314;Parent=Physo133314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 317756 318019 . + 0 ID=Physo133314;Parent=Physo133314;rank=1 scaffold_25 . exon 317756 318019 . + . ID=Physo133314.1;Parent=Physo133314;constitutive=1;rank=1 scaffold_25 . CDS 318085 318153 . + 0 ID=Physo133314;Parent=Physo133314;rank=2 scaffold_25 . exon 318085 318153 . + . ID=Physo133314.2;Parent=Physo133314;constitutive=1;rank=2 scaffold_25 . CDS 318236 319311 . + 0 ID=Physo133314;Parent=Physo133314;rank=3 scaffold_25 . exon 318236 319311 . + . ID=Physo133314.3;Parent=Physo133314;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 319393 319486 . + 0 ID=Physo133314;Parent=Physo133314;rank=4 scaffold_25 . exon 319393 319486 . + . ID=Physo133314.4;Parent=Physo133314;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 319553 319636 . + 0 ID=Physo133314;Parent=Physo133314;rank=5 scaffold_25 . exon 319553 319775 . + . ID=Physo133314.5;Parent=Physo133314;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_25 ensembl protein_coding_gene 323133 323543 . + . ID=Physo133315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250069;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 323133 323543 . + . ID=Physo133315;Parent=Physo133315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 323133 323543 . + 0 ID=Physo133315;Parent=Physo133315;rank=1 scaffold_25 . exon 323133 323543 . + . ID=Physo133315.1;Parent=Physo133315;constitutive=1;rank=1 scaffold_25 . repeat_region 325872 327201 . ? . description=dust scaffold_25 . repeat_region 330448 330495 . ? . description=trf scaffold_25 . repeat_region 332751 332791 . ? . description=trf scaffold_25 . repeat_region 332976 332989 . ? . description=dust scaffold_25 . repeat_region 333013 333053 . ? . description=trf scaffold_25 . biological_region 333730 333732 0.999 + . logic_name=eponine scaffold_25 . biological_region 333809 333809 0.999 - . logic_name=eponine scaffold_25 . repeat_region 334047 334076 . ? . description=trf scaffold_25 ensembl protein_coding_gene 327320 327905 . + . ID=Physo133316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250070;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 327320 327905 . + . ID=Physo133316;Parent=Physo133316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 327320 327754 . + 0 ID=Physo133316;Parent=Physo133316;rank=1 scaffold_25 . exon 327320 327754 . + . ID=Physo133316.1;Parent=Physo133316;constitutive=1;rank=1 scaffold_25 . CDS 327822 327905 . + 0 ID=Physo133316;Parent=Physo133316;rank=2 scaffold_25 . exon 327822 327905 . + . ID=Physo133316.2;Parent=Physo133316;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 330805 333084 . - . ID=Physo133317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250071;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 330805 333084 . - . ID=Physo133317;Parent=Physo133317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 330805 330891 . - 0 ID=Physo133317;Parent=Physo133317;rank=4 scaffold_25 . exon 330805 330891 . - . ID=Physo133317.4;Parent=Physo133317;constitutive=1;rank=4 scaffold_25 . CDS 330963 331719 . - 0 ID=Physo133317;Parent=Physo133317;rank=3 scaffold_25 . exon 330963 331719 . - . ID=Physo133317.3;Parent=Physo133317;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 331785 332909 . - 0 ID=Physo133317;Parent=Physo133317;rank=2 scaffold_25 . exon 331785 332909 . - . ID=Physo133317.2;Parent=Physo133317;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_25 . CDS 332996 333084 . - 0 ID=Physo133317;Parent=Physo133317;rank=1 scaffold_25 . exon 332996 333084 . - . ID=Physo133317.1;Parent=Physo133317;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 333251 334669 . + . ID=Physo133318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250072;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 333251 334669 . + . ID=Physo133318;Parent=Physo133318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 333251 334669 . + 0 ID=Physo133318;Parent=Physo133318;rank=1 scaffold_25 . exon 333251 334669 . + . ID=Physo133318.1;Parent=Physo133318;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 339170 340504 . - . ID=Physo133319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250073;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 339170 340504 . - . ID=Physo133319;Parent=Physo133319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 339170 340504 . - 0 ID=Physo133319;Parent=Physo133319;rank=1 scaffold_25 . exon 339170 340504 . - . ID=Physo133319.1;Parent=Physo133319;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 343721 345736 . + . ID=Physo133320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250074;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 343721 345736 . + . ID=Physo133320;Parent=Physo133320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 343721 343831 . + 0 ID=Physo133320;Parent=Physo133320;rank=1 scaffold_25 . exon 343721 343831 . + . ID=Physo133320.1;Parent=Physo133320;constitutive=1;rank=1 scaffold_25 . CDS 343902 344486 . + 0 ID=Physo133320;Parent=Physo133320;rank=2 scaffold_25 . exon 343902 344486 . + . ID=Physo133320.2;Parent=Physo133320;constitutive=1;rank=2 scaffold_25 . CDS 344537 345736 . + 0 ID=Physo133320;Parent=Physo133320;rank=3 scaffold_25 . exon 344537 345736 . + . ID=Physo133320.3;Parent=Physo133320;constitutive=1;rank=3 scaffold_25 . repeat_region 346442 346457 . ? . description=dust scaffold_25 . repeat_region 347226 347233 . ? . description=dust scaffold_25 . repeat_region 350277 350288 . ? . description=dust scaffold_25 . repeat_region 350685 350702 . ? . description=dust scaffold_25 . repeat_region 351760 351802 . ? . description=trf scaffold_25 ensembl protein_coding_gene 351155 351685 . + . ID=Physo133321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250075;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 351155 351685 . + . ID=Physo133321;Parent=Physo133321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 351155 351685 . + 0 ID=Physo133321;Parent=Physo133321;rank=1 scaffold_25 . exon 351155 351685 . + . ID=Physo133321.1;Parent=Physo133321;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 360254 361006 . + . ID=Physo133322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250076;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 360254 361006 . + . ID=Physo133322;Parent=Physo133322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 360254 360895 . + 0 ID=Physo133322;Parent=Physo133322;rank=1 scaffold_25 . exon 360254 360895 . + . ID=Physo133322.1;Parent=Physo133322;constitutive=1;rank=1 scaffold_25 . CDS 360968 361006 . + 0 ID=Physo133322;Parent=Physo133322;rank=2 scaffold_25 . exon 360968 361006 . + . ID=Physo133322.2;Parent=Physo133322;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 363977 365345 . - . ID=Physo133323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250077;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 363977 365345 . - . ID=Physo133323;Parent=Physo133323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 363977 364510 . - 0 ID=Physo133323;Parent=Physo133323;rank=4 scaffold_25 . exon 363977 364510 . - . ID=Physo133323.4;Parent=Physo133323;constitutive=1;rank=4 scaffold_25 . CDS 364696 364895 . - 0 ID=Physo133323;Parent=Physo133323;rank=3 scaffold_25 . exon 364696 364895 . - . ID=Physo133323.3;Parent=Physo133323;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 364931 365132 . - 0 ID=Physo133323;Parent=Physo133323;rank=2 scaffold_25 . exon 364931 365132 . - . ID=Physo133323.2;Parent=Physo133323;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 365154 365345 . - 0 ID=Physo133323;Parent=Physo133323;rank=1 scaffold_25 . exon 365154 365345 . - . ID=Physo133323.1;Parent=Physo133323;constitutive=1;rank=1 scaffold_25 . repeat_region 366695 366702 . ? . description=dust scaffold_25 . repeat_region 369623 369631 . ? . description=dust scaffold_25 . repeat_region 369635 369661 . ? . description=dust scaffold_25 . repeat_region 374954 375072 . ? . description=trf scaffold_25 . biological_region 383993 383995 0.999 + . logic_name=eponine scaffold_25 . biological_region 384000 384005 0.999 - . logic_name=eponine scaffold_25 . biological_region 384757 384761 0.999 + . logic_name=eponine scaffold_25 . biological_region 385069 385071 0.999 + . logic_name=eponine scaffold_25 . biological_region 385094 385100 0.999 + . logic_name=eponine scaffold_25 . biological_region 385131 385135 0.999 - . logic_name=eponine scaffold_25 . biological_region 385151 385153 0.999 + . logic_name=eponine scaffold_25 . biological_region 385166 385170 0.999 + . logic_name=eponine scaffold_25 . biological_region 385188 385192 0.999 + . logic_name=eponine scaffold_25 . biological_region 385213 385214 0.999 - . logic_name=eponine scaffold_25 . biological_region 385229 385231 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 375777 376270 . - . ID=Physo133324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250078;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 375777 376270 . - . ID=Physo133324;Parent=Physo133324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 375777 375779 . - 0 ID=Physo133324;Parent=Physo133324;rank=2 scaffold_25 . exon 375777 375779 . - . ID=Physo133324.2;Parent=Physo133324;constitutive=1;rank=2 scaffold_25 . CDS 375806 376270 . - 0 ID=Physo133324;Parent=Physo133324;rank=1 scaffold_25 . exon 375806 376270 . - . ID=Physo133324.1;Parent=Physo133324;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 381923 385162 . - . ID=Physo133325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250079;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 381923 385162 . - . ID=Physo133325;Parent=Physo133325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 381923 384226 . - 0 ID=Physo133325;Parent=Physo133325;rank=3 scaffold_25 . exon 381923 384226 . - . ID=Physo133325.3;Parent=Physo133325;constitutive=1;rank=3 scaffold_25 . CDS 384496 384648 . - 0 ID=Physo133325;Parent=Physo133325;rank=2 scaffold_25 . exon 384496 384648 . - . ID=Physo133325.2;Parent=Physo133325;constitutive=1;rank=2 scaffold_25 . CDS 384692 385162 . - 0 ID=Physo133325;Parent=Physo133325;rank=1 scaffold_25 . exon 384692 385162 . - . ID=Physo133325.1;Parent=Physo133325;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 385863 386548 . + . ID=Physo133326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250080;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 385863 386548 . + . ID=Physo133326;Parent=Physo133326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 385863 386039 . + . ID=Physo133326.1;Parent=Physo133326;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_25 . CDS 385865 386039 . + 0 ID=Physo133326;Parent=Physo133326;rank=1 scaffold_25 . CDS 386109 386195 . + 0 ID=Physo133326;Parent=Physo133326;rank=2 scaffold_25 . exon 386109 386195 . + . ID=Physo133326.2;Parent=Physo133326;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 386314 386462 . + 0 ID=Physo133326;Parent=Physo133326;rank=3 scaffold_25 . exon 386314 386548 . + . ID=Physo133326.3;Parent=Physo133326;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_25 . biological_region 396082 396090 0.999 + . logic_name=eponine scaffold_25 . biological_region 397346 397351 0.999 - . logic_name=eponine scaffold_25 . repeat_region 397732 397801 . ? . description=trf scaffold_25 . biological_region 402676 402678 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 395516 398760 . - . ID=Physo133327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250081;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 395516 398760 . - . ID=Physo133327;Parent=Physo133327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 395516 396232 . - 0 ID=Physo133327;Parent=Physo133327;rank=3 scaffold_25 . exon 395516 396232 . - . ID=Physo133327.3;Parent=Physo133327;constitutive=1;rank=3 scaffold_25 . CDS 396653 397476 . - 0 ID=Physo133327;Parent=Physo133327;rank=2 scaffold_25 . exon 396653 397476 . - . ID=Physo133327.2;Parent=Physo133327;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 397722 398760 . - 0 ID=Physo133327;Parent=Physo133327;rank=1 scaffold_25 . exon 397722 398760 . - . ID=Physo133327.1;Parent=Physo133327;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . repeat_region 407464 407471 . ? . description=dust scaffold_25 . repeat_region 410740 410835 . ? . description=dust scaffold_25 . repeat_region 414487 414494 . ? . description=dust scaffold_25 . repeat_region 416857 416901 . ? . description=trf scaffold_25 . repeat_region 421714 421761 . ? . description=trf scaffold_25 . repeat_region 421720 421770 . ? . description=trf scaffold_25 . repeat_region 421977 422005 . ? . description=trf scaffold_25 ensembl protein_coding_gene 421531 422489 . + . ID=Physo133328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250082;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 421531 422489 . + . ID=Physo133328;Parent=Physo133328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 421531 422355 . + 0 ID=Physo133328;Parent=Physo133328;rank=1 scaffold_25 . exon 421531 422355 . + . ID=Physo133328.1;Parent=Physo133328;constitutive=1;rank=1 scaffold_25 . CDS 422481 422489 . + 0 ID=Physo133328;Parent=Physo133328;rank=2 scaffold_25 . exon 422481 422489 . + . ID=Physo133328.2;Parent=Physo133328;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 424899 426146 . + . ID=Physo133329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250083;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 424899 426146 . + . ID=Physo133329;Parent=Physo133329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 424899 426146 . + 0 ID=Physo133329;Parent=Physo133329;rank=1 scaffold_25 . exon 424899 426146 . + . ID=Physo133329.1;Parent=Physo133329;constitutive=1;rank=1 scaffold_25 . repeat_region 427858 427871 . ? . description=dust scaffold_25 . repeat_region 428082 428095 . ? . description=dust scaffold_25 . biological_region 433736 433738 0.999 - . logic_name=eponine scaffold_25 . biological_region 433858 433861 0.999 + . logic_name=eponine scaffold_25 . biological_region 434502 434504 0.999 + . logic_name=eponine scaffold_25 . repeat_region 434685 434692 . ? . description=dust scaffold_25 ensembl protein_coding_gene 430315 432138 . - . ID=Physo133330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250084;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 430315 432138 . - . ID=Physo133330;Parent=Physo133330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 430315 432138 . - 0 ID=Physo133330;Parent=Physo133330;rank=1 scaffold_25 . exon 430315 432138 . - . ID=Physo133330.1;Parent=Physo133330;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 433363 434615 . + . ID=Physo133331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250085;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 433363 434615 . + . ID=Physo133331;Parent=Physo133331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 433363 434070 . + 0 ID=Physo133331;Parent=Physo133331;rank=1 scaffold_25 . exon 433363 434070 . + . ID=Physo133331.1;Parent=Physo133331;constitutive=1;rank=1 scaffold_25 . CDS 434153 434315 . + 0 ID=Physo133331;Parent=Physo133331;rank=2 scaffold_25 . exon 434153 434315 . + . ID=Physo133331.2;Parent=Physo133331;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 434404 434615 . + 0 ID=Physo133331;Parent=Physo133331;rank=3 scaffold_25 . exon 434404 434615 . + . ID=Physo133331.3;Parent=Physo133331;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . repeat_region 438513 438631 . ? . description=trf scaffold_25 ensembl protein_coding_gene 442358 443641 . + . ID=Physo133332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250086;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 442358 443641 . + . ID=Physo133332;Parent=Physo133332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 442358 443107 . + 0 ID=Physo133332;Parent=Physo133332;rank=1 scaffold_25 . exon 442358 443107 . + . ID=Physo133332.1;Parent=Physo133332;constitutive=1;rank=1 scaffold_25 . CDS 443191 443353 . + 0 ID=Physo133332;Parent=Physo133332;rank=2 scaffold_25 . exon 443191 443353 . + . ID=Physo133332.2;Parent=Physo133332;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 443430 443641 . + 0 ID=Physo133332;Parent=Physo133332;rank=3 scaffold_25 . exon 443430 443641 . + . ID=Physo133332.3;Parent=Physo133332;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . repeat_region 445051 445058 . ? . description=dust scaffold_25 . biological_region 446351 446357 0.999 + . logic_name=eponine scaffold_25 . biological_region 451932 451935 0.999 + . logic_name=eponine scaffold_25 . biological_region 452526 452529 0.999 - . logic_name=eponine scaffold_25 . biological_region 452560 452564 0.999 - . logic_name=eponine scaffold_25 . repeat_region 452936 452947 . ? . description=dust scaffold_25 . biological_region 453262 453263 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 445486 446769 . - . ID=Physo133333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250087;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 445486 446769 . - . ID=Physo133333;Parent=Physo133333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 445486 445697 . - 0 ID=Physo133333;Parent=Physo133333;rank=3 scaffold_25 . exon 445486 445697 . - . ID=Physo133333.3;Parent=Physo133333;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 445774 445936 . - 0 ID=Physo133333;Parent=Physo133333;rank=2 scaffold_25 . exon 445774 445936 . - . ID=Physo133333.2;Parent=Physo133333;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 446020 446769 . - 0 ID=Physo133333;Parent=Physo133333;rank=1 scaffold_25 . exon 446020 446769 . - . ID=Physo133333.1;Parent=Physo133333;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 447888 448400 . - . ID=Physo133334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250088;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 447888 448400 . - . ID=Physo133334;Parent=Physo133334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 447888 448400 . - 0 ID=Physo133334;Parent=Physo133334;rank=1 scaffold_25 . exon 447888 448400 . - . ID=Physo133334.1;Parent=Physo133334;constitutive=1;rank=1 scaffold_25 . repeat_region 459200 459367 . ? . description=trf scaffold_25 . repeat_region 459200 459371 . ? . description=trf scaffold_25 ensembl protein_coding_gene 460043 462060 . + . ID=Physo133335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250089;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 460043 462060 . + . ID=Physo133335;Parent=Physo133335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 460043 461279 . + 0 ID=Physo133335;Parent=Physo133335;rank=1 scaffold_25 . exon 460043 461279 . + . ID=Physo133335.1;Parent=Physo133335;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 461303 462060 . + 0 ID=Physo133335;Parent=Physo133335;rank=2 scaffold_25 . exon 461303 462060 . + . ID=Physo133335.2;Parent=Physo133335;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . repeat_region 470204 470216 . ? . description=dust scaffold_25 ensembl protein_coding_gene 468511 469981 . + . ID=Physo133336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250090;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 468511 469981 . + . ID=Physo133336;Parent=Physo133336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 468511 469180 . + 0 ID=Physo133336;Parent=Physo133336;rank=1 scaffold_25 . exon 468511 469180 . + . ID=Physo133336.1;Parent=Physo133336;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 469374 469981 . + 0 ID=Physo133336;Parent=Physo133336;rank=2 scaffold_25 . exon 469374 469981 . + . ID=Physo133336.2;Parent=Physo133336;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 ensembl protein_coding_gene 475656 477384 . - . ID=Physo133337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250091;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 475656 477384 . - . ID=Physo133337;Parent=Physo133337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 475656 476866 . - 0 ID=Physo133337;Parent=Physo133337;rank=2 scaffold_25 . exon 475656 476866 . - . ID=Physo133337.2;Parent=Physo133337;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 476991 477384 . - 0 ID=Physo133337;Parent=Physo133337;rank=1 scaffold_25 . exon 476991 477384 . - . ID=Physo133337.1;Parent=Physo133337;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . repeat_region 484931 484938 . ? . description=dust scaffold_25 . repeat_region 486558 486764 . ? . description=trf scaffold_25 . repeat_region 487093 487101 . ? . description=dust scaffold_25 . repeat_region 489930 489958 . ? . description=dust scaffold_25 . biological_region 491128 491131 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 485022 487055 . + . ID=Physo133338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250092;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 485022 487055 . + . ID=Physo133338;Parent=Physo133338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 485022 485593 . + 0 ID=Physo133338;Parent=Physo133338;rank=1 scaffold_25 . exon 485022 485593 . + . ID=Physo133338.1;Parent=Physo133338;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 485681 487055 . + 0 ID=Physo133338;Parent=Physo133338;rank=2 scaffold_25 . exon 485681 487055 . + . ID=Physo133338.2;Parent=Physo133338;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 ensembl protein_coding_gene 494780 496438 . + . ID=Physo133339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250093;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 494780 496438 . + . ID=Physo133339;Parent=Physo133339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 494780 495012 . + 0 ID=Physo133339;Parent=Physo133339;rank=1 scaffold_25 . exon 494780 495012 . + . ID=Physo133339.1;Parent=Physo133339;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 495101 496076 . + 0 ID=Physo133339;Parent=Physo133339;rank=2 scaffold_25 . exon 495101 496076 . + . ID=Physo133339.2;Parent=Physo133339;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 496202 496438 . + 0 ID=Physo133339;Parent=Physo133339;rank=3 scaffold_25 . exon 496202 496438 . + . ID=Physo133339.3;Parent=Physo133339;constitutive=1;rank=3 scaffold_25 . biological_region 507468 507468 0.999 + . logic_name=eponine scaffold_25 . repeat_region 511132 511144 . ? . description=dust scaffold_25 . biological_region 513842 513845 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 507762 509163 . - . ID=Physo133340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250094;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 507762 509163 . - . ID=Physo133340;Parent=Physo133340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 507762 507785 . - 0 ID=Physo133340;Parent=Physo133340;rank=4 scaffold_25 . exon 507762 507785 . - . ID=Physo133340.4;Parent=Physo133340;constitutive=1;rank=4 scaffold_25 . CDS 507814 507921 . - 0 ID=Physo133340;Parent=Physo133340;rank=3 scaffold_25 . exon 507814 507921 . - . ID=Physo133340.3;Parent=Physo133340;constitutive=1;rank=3 scaffold_25 . CDS 508047 509007 . - 0 ID=Physo133340;Parent=Physo133340;rank=2 scaffold_25 . exon 508047 509007 . - . ID=Physo133340.2;Parent=Physo133340;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 509042 509163 . - 0 ID=Physo133340;Parent=Physo133340;rank=1 scaffold_25 . exon 509042 509163 . - . ID=Physo133340.1;Parent=Physo133340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 513154 515054 . + . ID=Physo133341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250095;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 513154 515054 . + . ID=Physo133341;Parent=Physo133341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 513154 514030 . + 0 ID=Physo133341;Parent=Physo133341;rank=1 scaffold_25 . exon 513154 514030 . + . ID=Physo133341.1;Parent=Physo133341;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 514081 515054 . + 0 ID=Physo133341;Parent=Physo133341;rank=2 scaffold_25 . repeat_region 520224 520254 . ? . description=trf scaffold_25 . repeat_region 520579 520629 . ? . description=trf scaffold_25 . repeat_region 523611 523656 . ? . description=trf scaffold_25 . exon 514081 515054 . + . ID=Physo133341.2;Parent=Physo133341;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 ensembl protein_coding_gene 517461 519118 . - . ID=Physo133342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250096;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 517461 519118 . - . ID=Physo133342;Parent=Physo133342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 517461 517697 . - 0 ID=Physo133342;Parent=Physo133342;rank=3 scaffold_25 . exon 517461 517697 . - . ID=Physo133342.3;Parent=Physo133342;constitutive=1;rank=3 scaffold_25 . CDS 517823 518875 . - 0 ID=Physo133342;Parent=Physo133342;rank=2 scaffold_25 . exon 517823 518875 . - . ID=Physo133342.2;Parent=Physo133342;constitutive=1;rank=2 scaffold_25 . CDS 519107 519118 . - 0 ID=Physo133342;Parent=Physo133342;rank=1 scaffold_25 . exon 519107 519118 . - . ID=Physo133342.1;Parent=Physo133342;constitutive=1;rank=1 scaffold_25 . repeat_region 527691 527700 . ? . description=dust scaffold_25 . repeat_region 530197 530205 . ? . description=dust scaffold_25 . repeat_region 533163 533186 . ? . description=dust scaffold_25 . repeat_region 533195 533204 . ? . description=dust scaffold_25 . repeat_region 533590 533607 . ? . description=dust scaffold_25 ensembl protein_coding_gene 525458 527636 . - . ID=Physo133343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250097;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 525458 527636 . - . ID=Physo133343;Parent=Physo133343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 525458 526747 . - 0 ID=Physo133343;Parent=Physo133343;rank=3 scaffold_25 . exon 525458 526747 . - . ID=Physo133343.3;Parent=Physo133343;constitutive=1;rank=3 scaffold_25 . CDS 526807 527220 . - 0 ID=Physo133343;Parent=Physo133343;rank=2 scaffold_25 . exon 526807 527220 . - . ID=Physo133343.2;Parent=Physo133343;constitutive=1;rank=2 scaffold_25 . CDS 527250 527636 . - 0 ID=Physo133343;Parent=Physo133343;rank=1 scaffold_25 . exon 527250 527636 . - . ID=Physo133343.1;Parent=Physo133343;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 531806 532688 . + . ID=Physo133344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250098;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 531806 532688 . + . ID=Physo133344;Parent=Physo133344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 531806 532361 . + 0 ID=Physo133344;Parent=Physo133344;rank=1 scaffold_25 . exon 531806 532361 . + . ID=Physo133344.1;Parent=Physo133344;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 532438 532688 . + 0 ID=Physo133344;Parent=Physo133344;rank=2 scaffold_25 . exon 532438 532688 . + . ID=Physo133344.2;Parent=Physo133344;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . repeat_region 533853 533947 . ? . description=trf scaffold_25 . repeat_region 533862 533979 . ? . description=trf scaffold_25 . repeat_region 534024 534046 . ? . description=trf scaffold_25 . biological_region 537110 537113 0.999 - . logic_name=eponine scaffold_25 . biological_region 538420 538426 0.999 + . logic_name=eponine scaffold_25 . biological_region 538427 538434 0.999 - . logic_name=eponine scaffold_25 . repeat_region 538505 538525 . ? . description=trf scaffold_25 . biological_region 538513 538517 0.999 + . logic_name=eponine scaffold_25 . biological_region 538544 538548 0.999 - . logic_name=eponine scaffold_25 . biological_region 538970 538976 0.999 - . logic_name=eponine scaffold_25 . biological_region 539001 539002 0.999 - . logic_name=eponine scaffold_25 . biological_region 539079 539083 0.999 + . logic_name=eponine scaffold_25 . biological_region 539090 539090 0.999 - . logic_name=eponine scaffold_25 . biological_region 539110 539111 0.999 - . logic_name=eponine scaffold_25 . biological_region 539229 539232 0.999 + . logic_name=eponine scaffold_25 . biological_region 539254 539269 0.999 - . logic_name=eponine scaffold_25 . biological_region 539915 539921 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 533723 534760 . - . ID=Physo133345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250099;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 533723 534760 . - . ID=Physo133345;Parent=Physo133345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 533723 534123 . - 0 ID=Physo133345;Parent=Physo133345;rank=2 scaffold_25 . exon 533723 534123 . - . ID=Physo133345.2;Parent=Physo133345;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 534202 534760 . - 0 ID=Physo133345;Parent=Physo133345;rank=1 scaffold_25 . exon 534202 534760 . - . ID=Physo133345.1;Parent=Physo133345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 536865 537998 . - . ID=Physo133346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250100;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 536865 537998 . - . ID=Physo133346;Parent=Physo133346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 536865 537998 . - 0 ID=Physo133346;Parent=Physo133346;rank=1 scaffold_25 . exon 536865 537998 . - . ID=Physo133346.1;Parent=Physo133346;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 538335 539929 . + . ID=Physo133347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250101;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 538335 539929 . + . ID=Physo133347;Parent=Physo133347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 538335 539818 . + 0 ID=Physo133347;Parent=Physo133347;rank=1 scaffold_25 . exon 538335 539818 . + . ID=Physo133347.1;Parent=Physo133347;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 539854 539929 . + 0 ID=Physo133347;Parent=Physo133347;rank=2 scaffold_25 . exon 539854 539929 . + . ID=Physo133347.2;Parent=Physo133347;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 ensembl protein_coding_gene 540871 548157 . - . ID=Physo133348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250102;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 540871 548157 . - . ID=Physo133348;Parent=Physo133348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 540871 541938 . - 0 ID=Physo133348;Parent=Physo133348;rank=10 scaffold_25 . exon 540871 541938 . - . ID=Physo133348.10;Parent=Physo133348;constitutive=1;rank=10 scaffold_25 . CDS 541994 542063 . - 0 ID=Physo133348;Parent=Physo133348;rank=9 scaffold_25 . exon 541994 542063 . - . ID=Physo133348.9;Parent=Physo133348;constitutive=1;ensembl_phase=2;rank=9 scaffold_25 . CDS 542148 542382 . - 0 ID=Physo133348;Parent=Physo133348;rank=8 scaffold_25 . exon 542148 542382 . - . ID=Physo133348.8;Parent=Physo133348;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_25 . CDS 542452 543129 . - 0 ID=Physo133348;Parent=Physo133348;rank=7 scaffold_25 . exon 542452 543129 . - . ID=Physo133348.7;Parent=Physo133348;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_25 . CDS 543183 544597 . - 0 ID=Physo133348;Parent=Physo133348;rank=6 scaffold_25 . exon 543183 544597 . - . ID=Physo133348.6;Parent=Physo133348;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_25 . CDS 544621 544882 . - 0 ID=Physo133348;Parent=Physo133348;rank=5 scaffold_25 . CDS 544922 546188 . - 0 ID=Physo133348;Parent=Physo133348;rank=4 scaffold_25 . CDS 546294 546998 . - 0 ID=Physo133348;Parent=Physo133348;rank=3 scaffold_25 . CDS 547149 547770 . - 0 ID=Physo133348;Parent=Physo133348;rank=2 scaffold_25 . CDS 547847 548157 . - 0 ID=Physo133348;Parent=Physo133348;rank=1 scaffold_25 . repeat_region 551655 551663 . ? . description=dust scaffold_25 . exon 544621 544882 . - . ID=Physo133348.5;Parent=Physo133348;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_25 . exon 544922 546188 . - . ID=Physo133348.4;Parent=Physo133348;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_25 . exon 546294 546998 . - . ID=Physo133348.3;Parent=Physo133348;constitutive=1;rank=3 scaffold_25 . exon 547149 547770 . - . ID=Physo133348.2;Parent=Physo133348;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . exon 547847 548157 . - . ID=Physo133348.1;Parent=Physo133348;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 552616 553274 . - . ID=Physo133349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250103;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 552616 553274 . - . ID=Physo133349;Parent=Physo133349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 552616 552641 . - 0 ID=Physo133349;Parent=Physo133349;rank=3 scaffold_25 . exon 552616 552641 . - . ID=Physo133349.3;Parent=Physo133349;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 . CDS 552716 552968 . - 0 ID=Physo133349;Parent=Physo133349;rank=2 scaffold_25 . exon 552716 552968 . - . ID=Physo133349.2;Parent=Physo133349;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 553083 553274 . - 0 ID=Physo133349;Parent=Physo133349;rank=1 scaffold_25 . exon 553083 553274 . - . ID=Physo133349.1;Parent=Physo133349;constitutive=1;rank=1 scaffold_25 . biological_region 555825 555830 0.999 + . logic_name=eponine scaffold_25 . biological_region 555880 555882 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 555744 556537 . + . ID=Physo133350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250104;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 555744 556537 . + . ID=Physo133350;Parent=Physo133350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 555744 556226 . + 0 ID=Physo133350;Parent=Physo133350;rank=1 scaffold_25 . exon 555744 556226 . + . ID=Physo133350.1;Parent=Physo133350;constitutive=1;rank=1 scaffold_25 . CDS 556517 556537 . + 0 ID=Physo133350;Parent=Physo133350;rank=2 scaffold_25 . exon 556517 556537 . + . ID=Physo133350.2;Parent=Physo133350;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 561110 561761 . - . ID=Physo133351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250105;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 561110 561761 . - . ID=Physo133351;Parent=Physo133351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 561110 561135 . - 0 ID=Physo133351;Parent=Physo133351;rank=2 scaffold_25 . exon 561110 561135 . - . ID=Physo133351.2;Parent=Physo133351;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 561203 561761 . - 0 ID=Physo133351;Parent=Physo133351;rank=1 scaffold_25 . exon 561203 561761 . - . ID=Physo133351.1;Parent=Physo133351;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . repeat_region 565585 565665 . ? . description=trf scaffold_25 . repeat_region 568361 568376 . ? . description=dust scaffold_25 . repeat_region 571190 571200 . ? . description=dust scaffold_25 ensembl protein_coding_gene 563665 564373 . - . ID=Physo133352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250106;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 563665 564373 . - . ID=Physo133352;Parent=Physo133352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 563665 563726 . - 0 ID=Physo133352;Parent=Physo133352;rank=2 scaffold_25 . exon 563665 563726 . - . ID=Physo133352.2;Parent=Physo133352;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 563809 564373 . - 0 ID=Physo133352;Parent=Physo133352;rank=1 scaffold_25 . exon 563809 564373 . - . ID=Physo133352.1;Parent=Physo133352;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 566903 567611 . + . ID=Physo133353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250107;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 566903 567611 . + . ID=Physo133353;Parent=Physo133353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 566903 567467 . + 0 ID=Physo133353;Parent=Physo133353;rank=1 scaffold_25 . exon 566903 567467 . + . ID=Physo133353.1;Parent=Physo133353;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 567550 567611 . + 0 ID=Physo133353;Parent=Physo133353;rank=2 scaffold_25 . exon 567550 567611 . + . ID=Physo133353.2;Parent=Physo133353;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 ensembl protein_coding_gene 568462 569511 . + . ID=Physo133354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250108;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 568462 569511 . + . ID=Physo133354;Parent=Physo133354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 568462 569511 . + 0 ID=Physo133354;Parent=Physo133354;rank=1 scaffold_25 . exon 568462 569511 . + . ID=Physo133354.1;Parent=Physo133354;constitutive=1;rank=1 scaffold_25 . biological_region 576331 576338 0.999 + . logic_name=eponine scaffold_25 . biological_region 576791 576794 0.999 + . logic_name=eponine scaffold_25 . biological_region 576884 576888 0.999 - . logic_name=eponine scaffold_25 . biological_region 577124 577125 0.999 - . logic_name=eponine scaffold_25 . biological_region 577327 577329 0.999 + . logic_name=eponine scaffold_25 . biological_region 577400 577403 0.999 - . logic_name=eponine scaffold_25 . biological_region 577420 577421 0.999 + . logic_name=eponine scaffold_25 . biological_region 578258 578259 0.999 - . logic_name=eponine scaffold_25 . biological_region 578547 578551 0.999 + . logic_name=eponine scaffold_25 . biological_region 578618 578622 0.999 - . logic_name=eponine scaffold_25 . biological_region 578675 578683 0.999 - . logic_name=eponine scaffold_25 ensembl snoRNA_gene 578685 578843 . - . ID=EPrPSOG00000000175;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_25 ensembl snoRNA 578685 578843 . - . ID=EPrPSOT00000000175;Parent=EPrPSOG00000000175;biotype=snoRNA;logic_name=ncrna_eg scaffold_25 . exon 578685 578843 . - . ID=EPrPSOE00000000175;Parent=EPrPSOT00000000175;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 578978 579755 . + . ID=Physo133355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250109;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 578978 579755 . + . ID=Physo133355;Parent=Physo133355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 578978 579685 . + 0 ID=Physo133355;Parent=Physo133355;rank=1 scaffold_25 . exon 578978 579685 . + . ID=Physo133355.1;Parent=Physo133355;constitutive=1;rank=1 scaffold_25 . CDS 579753 579755 . + 0 ID=Physo133355;Parent=Physo133355;rank=2 scaffold_25 . exon 579753 579755 . + . ID=Physo133355.2;Parent=Physo133355;constitutive=1;rank=2 scaffold_25 . repeat_region 585321 585329 . ? . description=dust scaffold_25 . repeat_region 591484 591531 . ? . description=trf scaffold_25 ensembl protein_coding_gene 589063 592282 . + . ID=Physo133356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250110;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 589063 592282 . + . ID=Physo133356;Parent=Physo133356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 589063 589437 . + 0 ID=Physo133356;Parent=Physo133356;rank=1 scaffold_25 . exon 589063 589437 . + . ID=Physo133356.1;Parent=Physo133356;constitutive=1;rank=1 scaffold_25 . CDS 589525 589715 . + 0 ID=Physo133356;Parent=Physo133356;rank=2 scaffold_25 . exon 589525 589715 . + . ID=Physo133356.2;Parent=Physo133356;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . CDS 589789 590366 . + 0 ID=Physo133356;Parent=Physo133356;rank=3 scaffold_25 . exon 589789 590366 . + . ID=Physo133356.3;Parent=Physo133356;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 590447 590469 . + 0 ID=Physo133356;Parent=Physo133356;rank=4 scaffold_25 . exon 590447 590469 . + . ID=Physo133356.4;Parent=Physo133356;constitutive=1;ensembl_phase=1;rank=4 scaffold_25 . CDS 590498 590574 . + 0 ID=Physo133356;Parent=Physo133356;rank=5 scaffold_25 . exon 590498 590574 . + . ID=Physo133356.5;Parent=Physo133356;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_25 . CDS 590734 591253 . + 0 ID=Physo133356;Parent=Physo133356;rank=6 scaffold_25 . exon 590734 591253 . + . ID=Physo133356.6;Parent=Physo133356;constitutive=1;ensembl_phase=2;rank=6 scaffold_25 . CDS 591803 592099 . + 0 ID=Physo133356;Parent=Physo133356;rank=7 scaffold_25 . exon 591803 592282 . + . ID=Physo133356.7;Parent=Physo133356;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_25 . biological_region 596394 596395 0.999 + . logic_name=eponine scaffold_25 . biological_region 596415 596418 0.999 + . logic_name=eponine scaffold_25 . biological_region 596487 596492 0.999 - . logic_name=eponine scaffold_25 . biological_region 597905 597912 0.999 + . logic_name=eponine scaffold_25 . biological_region 598014 598016 0.999 - . logic_name=eponine scaffold_25 . biological_region 598031 598038 0.999 + . logic_name=eponine scaffold_25 . biological_region 598067 598077 0.999 + . logic_name=eponine scaffold_25 . biological_region 598123 598126 0.999 + . logic_name=eponine scaffold_25 . biological_region 598230 598233 0.999 - . logic_name=eponine scaffold_25 . biological_region 598880 598882 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 594864 597578 . - . ID=Physo115314;biotype=protein_coding;external_name=estExt_Genewise1.C_250020;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 594864 597578 . - . ID=Physo115314;Parent=Physo115314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 594864 597416 . - 0 ID=Physo115314;Parent=Physo115314;rank=1 scaffold_25 . exon 594864 597578 . - . ID=Physo115314.1;Parent=Physo115314;constitutive=1;ensembl_phase=-1;rank=1 scaffold_25 ensembl protein_coding_gene 598384 603748 . - . ID=Physo133358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250112;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 598384 603748 . - . ID=Physo133358;Parent=Physo133358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 598384 601610 . - 0 ID=Physo133358;Parent=Physo133358;rank=2 scaffold_25 . exon 598384 601610 . - . ID=Physo133358.2;Parent=Physo133358;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 601870 603748 . - 0 ID=Physo133358;Parent=Physo133358;rank=1 scaffold_25 . exon 601870 603748 . - . ID=Physo133358.1;Parent=Physo133358;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . repeat_region 603379 603418 . ? . description=trf scaffold_25 . repeat_region 606356 606385 . ? . description=trf scaffold_25 . repeat_region 612465 612495 . ? . description=dust scaffold_25 ensembl protein_coding_gene 604265 605783 . - . ID=Physo133359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250113;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 604265 605783 . - . ID=Physo133359;Parent=Physo133359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 604265 605159 . - 0 ID=Physo133359;Parent=Physo133359;rank=2 scaffold_25 . exon 604265 605159 . - . ID=Physo133359.2;Parent=Physo133359;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 605287 605783 . - 0 ID=Physo133359;Parent=Physo133359;rank=1 scaffold_25 . exon 605287 605783 . - . ID=Physo133359.1;Parent=Physo133359;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 606954 608643 . + . ID=Physo133360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250114;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 606954 608643 . + . ID=Physo133360;Parent=Physo133360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 606954 607934 . + 0 ID=Physo133360;Parent=Physo133360;rank=1 scaffold_25 . exon 606954 607934 . + . ID=Physo133360.1;Parent=Physo133360;constitutive=1;rank=1 scaffold_25 . CDS 607968 608108 . + 0 ID=Physo133360;Parent=Physo133360;rank=2 scaffold_25 . exon 607968 608108 . + . ID=Physo133360.2;Parent=Physo133360;constitutive=1;rank=2 scaffold_25 . CDS 608230 608643 . + 0 ID=Physo133360;Parent=Physo133360;rank=3 scaffold_25 . exon 608230 608643 . + . ID=Physo133360.3;Parent=Physo133360;constitutive=1;rank=3 scaffold_25 ensembl protein_coding_gene 611009 611839 . - . ID=Physo133361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250115;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 611009 611839 . - . ID=Physo133361;Parent=Physo133361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 611009 611839 . - 0 ID=Physo133361;Parent=Physo133361;rank=1 scaffold_25 . exon 611009 611839 . - . ID=Physo133361.1;Parent=Physo133361;constitutive=1;rank=1 scaffold_25 . biological_region 614480 614487 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 612735 614138 . - . ID=Physo133362;biotype=protein_coding;description=PsAvh148 [Source:UniProtKB/TrEMBL%3BAcc:E0W4W9];external_name=estExt_fgenesh1_pg.C_250116;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 612735 614138 . - . ID=Physo133362;Parent=Physo133362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 612735 614138 . - 0 ID=Physo133362;Parent=Physo133362;rank=1 scaffold_25 . exon 612735 614138 . - . ID=Physo133362.1;Parent=Physo133362;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 615904 617209 . + . ID=Physo133363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250117;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 615904 617209 . + . ID=Physo133363;Parent=Physo133363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 615904 617209 . + . ID=Physo133363.1;Parent=Physo133363;constitutive=1;ensembl_phase=-1;rank=1 scaffold_25 . CDS 616148 617209 . + 0 ID=Physo133363;Parent=Physo133363;rank=1 scaffold_25 . repeat_region 624033 624062 . ? . description=trf scaffold_25 . repeat_region 624289 624315 . ? . description=trf scaffold_25 . repeat_region 627728 627880 . ? . description=trf scaffold_25 ensembl protein_coding_gene 626226 626579 . + . ID=Physo133364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250118;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 626226 626579 . + . ID=Physo133364;Parent=Physo133364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 626226 626579 . + 0 ID=Physo133364;Parent=Physo133364;rank=1 scaffold_25 . exon 626226 626579 . + . ID=Physo133364.1;Parent=Physo133364;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 629559 631142 . + . ID=Physo133365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250119;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 629559 631142 . + . ID=Physo133365;Parent=Physo133365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 629559 630194 . + 0 ID=Physo133365;Parent=Physo133365;rank=1 scaffold_25 . exon 629559 630194 . + . ID=Physo133365.1;Parent=Physo133365;constitutive=1;rank=1 scaffold_25 . CDS 630219 631142 . + 0 ID=Physo133365;Parent=Physo133365;rank=2 scaffold_25 . exon 630219 631142 . + . ID=Physo133365.2;Parent=Physo133365;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 631658 632014 . + . ID=Physo133366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250120;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 631658 632014 . + . ID=Physo133366;Parent=Physo133366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 631658 632014 . + 0 ID=Physo133366;Parent=Physo133366;rank=1 scaffold_25 . exon 631658 632014 . + . ID=Physo133366.1;Parent=Physo133366;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 632258 634177 . - . ID=Physo133367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250121;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 632258 634177 . - . ID=Physo133367;Parent=Physo133367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 632258 634177 . - 0 ID=Physo133367;Parent=Physo133367;rank=1 scaffold_25 . exon 632258 634177 . - . ID=Physo133367.1;Parent=Physo133367;constitutive=1;rank=1 scaffold_25 . biological_region 632908 632912 0.999 - . logic_name=eponine scaffold_25 . repeat_region 634834 634841 . ? . description=dust scaffold_25 . repeat_region 636841 636849 . ? . description=dust scaffold_25 . biological_region 641004 641007 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 641164 642953 . + . ID=Physo133369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250123;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 641164 642953 . + . ID=Physo133369;Parent=Physo133369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 641164 641727 . + 0 ID=Physo133369;Parent=Physo133369;rank=1 scaffold_25 . exon 641164 641727 . + . ID=Physo133369.1;Parent=Physo133369;constitutive=1;rank=1 scaffold_25 . CDS 641796 642953 . + 0 ID=Physo133369;Parent=Physo133369;rank=2 scaffold_25 . exon 641796 642953 . + . ID=Physo133369.2;Parent=Physo133369;constitutive=1;rank=2 scaffold_25 ensembl protein_coding_gene 638239 640688 . - . ID=Physo156710;biotype=protein_coding;external_name=C_scaffold_25000016;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 638239 640688 . - . ID=Physo156710;Parent=Physo156710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 638239 638926 . - 0 ID=Physo156710;Parent=Physo156710;rank=6 scaffold_25 . exon 638239 638926 . - . ID=Physo156710.6;Parent=Physo156710;constitutive=1;ensembl_phase=2;rank=6 scaffold_25 . CDS 639253 639393 . - 0 ID=Physo156710;Parent=Physo156710;rank=5 scaffold_25 . exon 639253 639393 . - . ID=Physo156710.5;Parent=Physo156710;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_25 . CDS 639413 639648 . - 0 ID=Physo156710;Parent=Physo156710;rank=4 scaffold_25 . exon 639413 639648 . - . ID=Physo156710.4;Parent=Physo156710;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_25 . CDS 639694 640005 . - 0 ID=Physo156710;Parent=Physo156710;rank=3 scaffold_25 . exon 639694 640005 . - . ID=Physo156710.3;Parent=Physo156710;constitutive=1;rank=3 scaffold_25 . CDS 640042 640309 . - 0 ID=Physo156710;Parent=Physo156710;rank=2 scaffold_25 . exon 640042 640309 . - . ID=Physo156710.2;Parent=Physo156710;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 640462 640688 . - 0 ID=Physo156710;Parent=Physo156710;rank=1 scaffold_25 . exon 640462 640688 . - . ID=Physo156710.1;Parent=Physo156710;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 648121 649139 . + . ID=Physo133370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250124;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 648121 649139 . + . ID=Physo133370;Parent=Physo133370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 648121 648263 . + 0 ID=Physo133370;Parent=Physo133370;rank=1 scaffold_25 . exon 648121 648263 . + . ID=Physo133370.1;Parent=Physo133370;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 648287 649139 . + 0 ID=Physo133370;Parent=Physo133370;rank=2 scaffold_25 . exon 648287 649139 . + . ID=Physo133370.2;Parent=Physo133370;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . repeat_region 654672 654679 . ? . description=dust scaffold_25 . biological_region 655010 655013 0.999 + . logic_name=eponine scaffold_25 ensembl protein_coding_gene 653909 655673 . - . ID=Physo133371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250125;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 653909 655673 . - . ID=Physo133371;Parent=Physo133371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 653909 654312 . - 0 ID=Physo133371;Parent=Physo133371;rank=6 scaffold_25 . exon 653909 654312 . - . ID=Physo133371.6;Parent=Physo133371;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 654384 654642 . - 0 ID=Physo133371;Parent=Physo133371;rank=5 scaffold_25 . exon 654384 654642 . - . ID=Physo133371.5;Parent=Physo133371;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_25 . CDS 654781 654856 . - 0 ID=Physo133371;Parent=Physo133371;rank=4 scaffold_25 . exon 654781 654856 . - . ID=Physo133371.4;Parent=Physo133371;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 655054 655248 . - 0 ID=Physo133371;Parent=Physo133371;rank=3 scaffold_25 . exon 655054 655248 . - . ID=Physo133371.3;Parent=Physo133371;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_25 . CDS 655324 655491 . - 0 ID=Physo133371;Parent=Physo133371;rank=2 scaffold_25 . exon 655324 655491 . - . ID=Physo133371.2;Parent=Physo133371;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_25 . CDS 655570 655673 . - 0 ID=Physo133371;Parent=Physo133371;rank=1 scaffold_25 . exon 655570 655673 . - . ID=Physo133371.1;Parent=Physo133371;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . repeat_region 664142 664192 . ? . description=trf scaffold_25 . repeat_region 664277 664356 . ? . description=trf scaffold_25 . repeat_region 664585 664757 . ? . description=trf scaffold_25 . repeat_region 665228 665251 . ? . description=trf scaffold_25 ensembl protein_coding_gene 664200 673080 . + . ID=Physo133372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250126;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 664200 673080 . + . ID=Physo133372;Parent=Physo133372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 664200 664652 . + 0 ID=Physo133372;Parent=Physo133372;rank=1 scaffold_25 . exon 664200 664652 . + . ID=Physo133372.1;Parent=Physo133372;constitutive=1;rank=1 scaffold_25 . CDS 664682 666112 . + 0 ID=Physo133372;Parent=Physo133372;rank=2 scaffold_25 . exon 664682 666112 . + . ID=Physo133372.2;Parent=Physo133372;constitutive=1;rank=2 scaffold_25 . CDS 666320 666399 . + 0 ID=Physo133372;Parent=Physo133372;rank=3 scaffold_25 . exon 666320 666399 . + . ID=Physo133372.3;Parent=Physo133372;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 666582 667467 . + 0 ID=Physo133372;Parent=Physo133372;rank=4 scaffold_25 . exon 666582 667467 . + . ID=Physo133372.4;Parent=Physo133372;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 667530 670119 . + 0 ID=Physo133372;Parent=Physo133372;rank=5 scaffold_25 . exon 667530 670119 . + . ID=Physo133372.5;Parent=Physo133372;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_25 . CDS 670171 670720 . + 0 ID=Physo133372;Parent=Physo133372;rank=6 scaffold_25 . exon 670171 670720 . + . ID=Physo133372.6;Parent=Physo133372;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_25 . CDS 671023 672187 . + 0 ID=Physo133372;Parent=Physo133372;rank=7 scaffold_25 . exon 671023 672187 . + . ID=Physo133372.7;Parent=Physo133372;constitutive=1;ensembl_phase=2;rank=7 scaffold_25 . CDS 672529 673080 . + 0 ID=Physo133372;Parent=Physo133372;rank=8 scaffold_25 . biological_region 674000 674004 0.999 - . logic_name=eponine scaffold_25 . biological_region 674385 674388 0.999 + . logic_name=eponine scaffold_25 . biological_region 674418 674422 0.999 - . logic_name=eponine scaffold_25 . biological_region 674795 674798 0.999 + . logic_name=eponine scaffold_25 . biological_region 675168 675169 0.999 + . logic_name=eponine scaffold_25 . repeat_region 677002 677017 . ? . description=dust scaffold_25 . exon 672529 673080 . + . ID=Physo133372.8;Parent=Physo133372;constitutive=1;rank=8 scaffold_25 ensembl protein_coding_gene 673272 674881 . - . ID=Physo133373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250127;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 673272 674881 . - . ID=Physo133373;Parent=Physo133373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 673272 673520 . - 0 ID=Physo133373;Parent=Physo133373;rank=4 scaffold_25 . exon 673272 673520 . - . ID=Physo133373.4;Parent=Physo133373;constitutive=1;rank=4 scaffold_25 . CDS 673551 674135 . - 0 ID=Physo133373;Parent=Physo133373;rank=3 scaffold_25 . exon 673551 674135 . - . ID=Physo133373.3;Parent=Physo133373;constitutive=1;rank=3 scaffold_25 . CDS 674227 674654 . - 0 ID=Physo133373;Parent=Physo133373;rank=2 scaffold_25 . exon 674227 674654 . - . ID=Physo133373.2;Parent=Physo133373;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 674749 674881 . - 0 ID=Physo133373;Parent=Physo133373;rank=1 scaffold_25 . exon 674749 674881 . - . ID=Physo133373.1;Parent=Physo133373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . repeat_region 683828 683850 . ? . description=trf scaffold_25 . biological_region 692293 692295 0.999 - . logic_name=eponine scaffold_25 . repeat_region 694365 694384 . ? . description=dust scaffold_25 . biological_region 698011 698015 0.999 - . logic_name=eponine scaffold_25 . biological_region 701350 701352 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 701188 706457 . + . ID=Physo133374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250128;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 701188 706457 . + . ID=Physo133374;Parent=Physo133374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 701188 701215 . + 0 ID=Physo133374;Parent=Physo133374;rank=1 scaffold_25 . exon 701188 701215 . + . ID=Physo133374.1;Parent=Physo133374;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 701621 702161 . + 0 ID=Physo133374;Parent=Physo133374;rank=2 scaffold_25 . exon 701621 702161 . + . ID=Physo133374.2;Parent=Physo133374;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_25 . CDS 702477 703392 . + 0 ID=Physo133374;Parent=Physo133374;rank=3 scaffold_25 . CDS 703461 704060 . + 0 ID=Physo133374;Parent=Physo133374;rank=4 scaffold_25 . CDS 704140 704572 . + 0 ID=Physo133374;Parent=Physo133374;rank=5 scaffold_25 . CDS 704629 705062 . + 0 ID=Physo133374;Parent=Physo133374;rank=6 scaffold_25 . CDS 705127 705413 . + 0 ID=Physo133374;Parent=Physo133374;rank=7 scaffold_25 . CDS 705507 706371 . + 0 ID=Physo133374;Parent=Physo133374;rank=8 scaffold_25 . CDS 706416 706457 . + 0 ID=Physo133374;Parent=Physo133374;rank=9 scaffold_25 . repeat_region 705183 705308 . ? . description=trf scaffold_25 . repeat_region 705185 705341 . ? . description=trf scaffold_25 . repeat_region 705185 705360 . ? . description=trf scaffold_25 . repeat_region 710142 710184 . ? . description=trf scaffold_25 . exon 702477 703392 . + . ID=Physo133374.3;Parent=Physo133374;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . exon 703461 704060 . + . ID=Physo133374.4;Parent=Physo133374;constitutive=1;rank=4 scaffold_25 . exon 704140 704572 . + . ID=Physo133374.5;Parent=Physo133374;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_25 . exon 704629 705062 . + . ID=Physo133374.6;Parent=Physo133374;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 . exon 705127 705413 . + . ID=Physo133374.7;Parent=Physo133374;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_25 . exon 705507 706371 . + . ID=Physo133374.8;Parent=Physo133374;constitutive=1;ensembl_phase=2;rank=8 scaffold_25 . exon 706416 706457 . + . ID=Physo133374.9;Parent=Physo133374;constitutive=1;rank=9 scaffold_25 ensembl protein_coding_gene 709339 709986 . - . ID=Physo133375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250129;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 709339 709986 . - . ID=Physo133375;Parent=Physo133375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 709339 709986 . - 0 ID=Physo133375;Parent=Physo133375;rank=1 scaffold_25 . exon 709339 709986 . - . ID=Physo133375.1;Parent=Physo133375;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 710691 712406 . + . ID=Physo133376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250130;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 710691 712406 . + . ID=Physo133376;Parent=Physo133376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 710691 711044 . + 0 ID=Physo133376;Parent=Physo133376;rank=1 scaffold_25 . exon 710691 711044 . + . ID=Physo133376.1;Parent=Physo133376;constitutive=1;rank=1 scaffold_25 . CDS 711136 711593 . + 0 ID=Physo133376;Parent=Physo133376;rank=2 scaffold_25 . exon 711136 711593 . + . ID=Physo133376.2;Parent=Physo133376;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_25 . CDS 711669 712193 . + 0 ID=Physo133376;Parent=Physo133376;rank=3 scaffold_25 . CDS 712259 712406 . + 0 ID=Physo133376;Parent=Physo133376;rank=4 scaffold_25 . repeat_region 713510 713536 . ? . description=dust scaffold_25 . biological_region 713762 713765 0.999 + . logic_name=eponine scaffold_25 . biological_region 713860 713866 0.999 + . logic_name=eponine scaffold_25 . biological_region 713879 713884 0.999 + . logic_name=eponine scaffold_25 . biological_region 713893 713898 0.999 - . logic_name=eponine scaffold_25 . biological_region 713894 713913 0.999 + . logic_name=eponine scaffold_25 . biological_region 713921 713930 0.999 - . logic_name=eponine scaffold_25 . biological_region 713948 713956 0.999 + . logic_name=eponine scaffold_25 . biological_region 713961 713968 0.999 - . logic_name=eponine scaffold_25 . biological_region 713987 714000 0.999 - . logic_name=eponine scaffold_25 . biological_region 714022 714025 0.999 - . logic_name=eponine scaffold_25 . biological_region 714050 714055 0.999 - . logic_name=eponine scaffold_25 . biological_region 714069 714074 0.999 - . logic_name=eponine scaffold_25 . biological_region 714146 714151 0.999 - . logic_name=eponine scaffold_25 . biological_region 714206 714208 0.999 + . logic_name=eponine scaffold_25 . biological_region 714983 714984 0.999 - . logic_name=eponine scaffold_25 . repeat_region 715315 715323 . ? . description=dust scaffold_25 . biological_region 715402 715408 0.999 - . logic_name=eponine scaffold_25 . biological_region 715660 715669 0.999 + . logic_name=eponine scaffold_25 . biological_region 715707 715712 0.999 - . logic_name=eponine scaffold_25 . biological_region 715749 715753 0.999 + . logic_name=eponine scaffold_25 . biological_region 715759 715763 0.999 + . logic_name=eponine scaffold_25 . biological_region 715824 715835 0.999 - . logic_name=eponine scaffold_25 . repeat_region 719752 719774 . ? . description=dust scaffold_25 . biological_region 720157 720160 0.999 - . logic_name=eponine scaffold_25 . biological_region 720185 720187 0.999 - . logic_name=eponine scaffold_25 . biological_region 720240 720240 0.999 + . logic_name=eponine scaffold_25 . biological_region 720521 720527 0.999 - . logic_name=eponine scaffold_25 . exon 711669 712193 . + . ID=Physo133376.3;Parent=Physo133376;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_25 . exon 712259 712406 . + . ID=Physo133376.4;Parent=Physo133376;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 ensembl protein_coding_gene 712525 714337 . - . ID=Physo133377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250131;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 712525 714337 . - . ID=Physo133377;Parent=Physo133377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 712525 712969 . - 0 ID=Physo133377;Parent=Physo133377;rank=3 scaffold_25 . exon 712525 712969 . - . ID=Physo133377.3;Parent=Physo133377;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 713195 713504 . - 0 ID=Physo133377;Parent=Physo133377;rank=2 scaffold_25 . exon 713195 713504 . - . ID=Physo133377.2;Parent=Physo133377;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_25 . CDS 713596 714337 . - 0 ID=Physo133377;Parent=Physo133377;rank=1 scaffold_25 . exon 713596 714337 . - . ID=Physo133377.1;Parent=Physo133377;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 716158 716919 . + . ID=Physo133378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250132;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 716158 716919 . + . ID=Physo133378;Parent=Physo133378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 716158 716919 . + 0 ID=Physo133378;Parent=Physo133378;rank=1 scaffold_25 . exon 716158 716919 . + . ID=Physo133378.1;Parent=Physo133378;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 717541 718263 . + . ID=Physo133379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250133;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 717541 718263 . + . ID=Physo133379;Parent=Physo133379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 717541 718263 . + 0 ID=Physo133379;Parent=Physo133379;rank=1 scaffold_25 . exon 717541 718263 . + . ID=Physo133379.1;Parent=Physo133379;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 719049 720176 . - . ID=Physo133380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250134;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 719049 720176 . - . ID=Physo133380;Parent=Physo133380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 719049 719253 . - . ID=Physo133380.2;Parent=Physo133380;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_25 . CDS 719085 719253 . - 0 ID=Physo133380;Parent=Physo133380;rank=2 scaffold_25 . CDS 719334 719674 . - 0 ID=Physo133380;Parent=Physo133380;rank=1 scaffold_25 . exon 719334 720176 . - . ID=Physo133380.1;Parent=Physo133380;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_25 ensembl protein_coding_gene 720907 722196 . - . ID=Physo133381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250135;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 720907 722196 . - . ID=Physo133381;Parent=Physo133381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 720907 722193 . - 0 ID=Physo133381;Parent=Physo133381;rank=1 scaffold_25 . exon 720907 722196 . - . ID=Physo133381.1;Parent=Physo133381;constitutive=1;ensembl_phase=-1;rank=1 scaffold_25 ensembl protein_coding_gene 714902 715189 . - . ID=Physo156715;biotype=protein_coding;external_name=C_scaffold_25000021;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 714902 715189 . - . ID=Physo156715;Parent=Physo156715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 714902 715005 . - 0 ID=Physo156715;Parent=Physo156715;rank=2 scaffold_25 . exon 714902 715005 . - . ID=Physo156715.2;Parent=Physo156715;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 715096 715189 . - 0 ID=Physo156715;Parent=Physo156715;rank=1 scaffold_25 . exon 715096 715189 . - . ID=Physo156715.1;Parent=Physo156715;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . repeat_region 725628 725722 . ? . description=trf scaffold_25 . repeat_region 727276 727297 . ? . description=trf scaffold_25 . repeat_region 728051 728145 . ? . description=trf scaffold_25 ensembl snoRNA_gene 725315 725538 . + . ID=EPrPSOG00000000205;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_25 ensembl snoRNA 725315 725538 . + . ID=EPrPSOT00000000205;Parent=EPrPSOG00000000205;biotype=snoRNA;logic_name=ncrna_eg scaffold_25 ensembl snoRNA_gene 727738 727961 . + . ID=EPrPSOG00000000257;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_25 ensembl snoRNA 727738 727961 . + . ID=EPrPSOT00000000257;Parent=EPrPSOG00000000257;biotype=snoRNA;logic_name=ncrna_eg scaffold_25 . exon 725315 725538 . + . ID=EPrPSOE00000000205;Parent=EPrPSOT00000000205;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . exon 727738 727961 . + . ID=EPrPSOE00000000257;Parent=EPrPSOT00000000257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 722598 724153 . + . ID=Physo133382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250136;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 722598 724153 . + . ID=Physo133382;Parent=Physo133382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 722598 723479 . + 0 ID=Physo133382;Parent=Physo133382;rank=1 scaffold_25 . exon 722598 723479 . + . ID=Physo133382.1;Parent=Physo133382;constitutive=1;rank=1 scaffold_25 . CDS 723562 724039 . + 0 ID=Physo133382;Parent=Physo133382;rank=2 scaffold_25 . exon 723562 724039 . + . ID=Physo133382.2;Parent=Physo133382;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_25 . CDS 724059 724153 . + 0 ID=Physo133382;Parent=Physo133382;rank=3 scaffold_25 . exon 724059 724153 . + . ID=Physo133382.3;Parent=Physo133382;constitutive=1;ensembl_phase=1;rank=3 scaffold_25 ensembl protein_coding_gene 724311 724796 . - . ID=Physo133383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250137;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 724311 724796 . - . ID=Physo133383;Parent=Physo133383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 724311 724381 . - 0 ID=Physo133383;Parent=Physo133383;rank=2 scaffold_25 . exon 724311 724381 . - . ID=Physo133383.2;Parent=Physo133383;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . CDS 724451 724796 . - 0 ID=Physo133383;Parent=Physo133383;rank=1 scaffold_25 . exon 724451 724796 . - . ID=Physo133383.1;Parent=Physo133383;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 726049 727067 . - . ID=Physo133384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250138;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 726049 727067 . - . ID=Physo133384;Parent=Physo133384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 726049 727050 . - 0 ID=Physo133384;Parent=Physo133384;rank=1 scaffold_25 . exon 726049 727067 . - . ID=Physo133384.1;Parent=Physo133384;constitutive=1;ensembl_phase=-1;rank=1 scaffold_25 . biological_region 738148 738149 0.999 + . logic_name=eponine scaffold_25 . biological_region 738243 738244 0.999 + . logic_name=eponine scaffold_25 . biological_region 738253 738253 0.999 - . logic_name=eponine scaffold_25 ensembl snoRNA_gene 736031 736236 . - . ID=EPrPSOG00000000026;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_25 ensembl snoRNA 736031 736236 . - . ID=EPrPSOT00000000026;Parent=EPrPSOG00000000026;biotype=snoRNA;logic_name=ncrna_eg scaffold_25 . exon 736031 736236 . - . ID=EPrPSOE00000000026;Parent=EPrPSOT00000000026;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 733263 734517 . - . ID=Physo133385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250139;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 733263 734517 . - . ID=Physo133385;Parent=Physo133385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 733263 733282 . - 0 ID=Physo133385;Parent=Physo133385;rank=6 scaffold_25 . exon 733263 733282 . - . ID=Physo133385.6;Parent=Physo133385;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 733412 733513 . - 0 ID=Physo133385;Parent=Physo133385;rank=5 scaffold_25 . exon 733412 733513 . - . ID=Physo133385.5;Parent=Physo133385;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_25 . CDS 733550 733664 . - 0 ID=Physo133385;Parent=Physo133385;rank=4 scaffold_25 . exon 733550 733664 . - . ID=Physo133385.4;Parent=Physo133385;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_25 . CDS 733945 734020 . - 0 ID=Physo133385;Parent=Physo133385;rank=3 scaffold_25 . exon 733945 734020 . - . ID=Physo133385.3;Parent=Physo133385;constitutive=1;ensembl_phase=2;rank=3 scaffold_25 . CDS 734062 734169 . - 0 ID=Physo133385;Parent=Physo133385;rank=2 scaffold_25 . exon 734062 734169 . - . ID=Physo133385.2;Parent=Physo133385;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_25 . CDS 734420 734517 . - 0 ID=Physo133385;Parent=Physo133385;rank=1 scaffold_25 . exon 734420 734517 . - . ID=Physo133385.1;Parent=Physo133385;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 734914 735513 . + . ID=Physo133386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250140;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 734914 735513 . + . ID=Physo133386;Parent=Physo133386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 734914 735513 . + 0 ID=Physo133386;Parent=Physo133386;rank=1 scaffold_25 . exon 734914 735513 . + . ID=Physo133386.1;Parent=Physo133386;constitutive=1;rank=1 scaffold_25 . repeat_region 744045 744052 . ? . description=dust scaffold_25 . repeat_region 745283 745332 . ? . description=dust scaffold_25 . repeat_region 750076 750083 . ? . description=dust scaffold_25 ensembl protein_coding_gene 743594 745093 . + . ID=Physo133387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250141;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 743594 745093 . + . ID=Physo133387;Parent=Physo133387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 743594 745093 . + . ID=Physo133387.1;Parent=Physo133387;constitutive=1;ensembl_phase=-1;rank=1 scaffold_25 . CDS 744092 745093 . + 0 ID=Physo133387;Parent=Physo133387;rank=1 scaffold_25 ensembl protein_coding_gene 749625 751124 . + . ID=Physo133388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250142;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 749625 751124 . + . ID=Physo133388;Parent=Physo133388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . exon 749625 751124 . + . ID=Physo133388.1;Parent=Physo133388;constitutive=1;ensembl_phase=-1;rank=1 scaffold_25 . CDS 750123 751124 . + 0 ID=Physo133388;Parent=Physo133388;rank=1 scaffold_25 . biological_region 751878 751881 0.999 + . logic_name=eponine scaffold_25 . biological_region 757436 757441 0.999 - . logic_name=eponine scaffold_25 . biological_region 757752 757757 0.999 - . logic_name=eponine scaffold_25 . biological_region 757974 757981 0.999 + . logic_name=eponine scaffold_25 . biological_region 758003 758005 0.999 + . logic_name=eponine scaffold_25 . biological_region 758030 758033 0.999 + . logic_name=eponine scaffold_25 . biological_region 758070 758073 0.999 + . logic_name=eponine scaffold_25 . biological_region 758099 758102 0.999 - . logic_name=eponine scaffold_25 . biological_region 758201 758205 0.999 - . logic_name=eponine scaffold_25 . biological_region 758720 758724 0.999 + . logic_name=eponine scaffold_25 . biological_region 758946 758953 0.999 - . logic_name=eponine scaffold_25 . biological_region 759086 759089 0.999 - . logic_name=eponine scaffold_25 . biological_region 759459 759461 0.999 - . logic_name=eponine scaffold_25 . biological_region 759713 759717 0.999 - . logic_name=eponine scaffold_25 . biological_region 759908 759913 0.999 + . logic_name=eponine scaffold_25 . biological_region 759936 759943 0.999 + . logic_name=eponine scaffold_25 . biological_region 759986 759988 0.999 + . logic_name=eponine scaffold_25 . biological_region 760020 760025 0.999 + . logic_name=eponine scaffold_25 . biological_region 760036 760040 0.999 - . logic_name=eponine scaffold_25 . biological_region 760262 760266 0.999 + . logic_name=eponine scaffold_25 . biological_region 760487 760489 0.999 + . logic_name=eponine scaffold_25 . biological_region 760535 760539 0.999 - . logic_name=eponine scaffold_25 . biological_region 760770 760775 0.999 - . logic_name=eponine scaffold_25 . biological_region 760773 760774 0.999 + . logic_name=eponine scaffold_25 . biological_region 760813 760816 0.999 - . logic_name=eponine scaffold_25 ensembl protein_coding_gene 752217 753230 . - . ID=Physo133389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250143;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 752217 753230 . - . ID=Physo133389;Parent=Physo133389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 752217 752766 . - 0 ID=Physo133389;Parent=Physo133389;rank=2 scaffold_25 . exon 752217 752766 . - . ID=Physo133389.2;Parent=Physo133389;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 752808 752866 . - 0 ID=Physo133389;Parent=Physo133389;rank=1 scaffold_25 . exon 752808 753230 . - . ID=Physo133389.1;Parent=Physo133389;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_25 ensembl protein_coding_gene 753780 754817 . - . ID=Physo133390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250144;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 753780 754817 . - . ID=Physo133390;Parent=Physo133390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 753780 754358 . - 0 ID=Physo133390;Parent=Physo133390;rank=2 scaffold_25 . exon 753780 754358 . - . ID=Physo133390.2;Parent=Physo133390;constitutive=1;rank=2 scaffold_25 . CDS 754422 754817 . - 0 ID=Physo133390;Parent=Physo133390;rank=1 scaffold_25 . exon 754422 754817 . - . ID=Physo133390.1;Parent=Physo133390;constitutive=1;rank=1 scaffold_25 ensembl protein_coding_gene 755316 756464 . - . ID=Physo133391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250145;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 755316 756464 . - . ID=Physo133391;Parent=Physo133391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 755316 756165 . - 0 ID=Physo133391;Parent=Physo133391;rank=2 scaffold_25 . exon 755316 756165 . - . ID=Physo133391.2;Parent=Physo133391;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 756295 756464 . - 0 ID=Physo133391;Parent=Physo133391;rank=1 scaffold_25 . exon 756295 756464 . - . ID=Physo133391.1;Parent=Physo133391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 ensembl protein_coding_gene 757232 760984 . + . ID=Physo133392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250146;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 757232 760984 . + . ID=Physo133392;Parent=Physo133392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 757232 757777 . + 0 ID=Physo133392;Parent=Physo133392;rank=1 scaffold_25 . exon 757232 757777 . + . ID=Physo133392.1;Parent=Physo133392;constitutive=1;rank=1 scaffold_25 . CDS 757976 760984 . + 0 ID=Physo133392;Parent=Physo133392;rank=2 scaffold_25 . exon 757976 760984 . + . ID=Physo133392.2;Parent=Physo133392;constitutive=1;rank=2 scaffold_25 . repeat_region 761408 767930 . ? . description=dust scaffold_25 . repeat_region 770113 770120 . ? . description=dust scaffold_25 ensembl protein_coding_gene 768067 770020 . + . ID=Physo133393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250147;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 768067 770020 . + . ID=Physo133393;Parent=Physo133393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 768067 768925 . + 0 ID=Physo133393;Parent=Physo133393;rank=1 scaffold_25 . exon 768067 768925 . + . ID=Physo133393.1;Parent=Physo133393;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . CDS 769008 770020 . + 0 ID=Physo133393;Parent=Physo133393;rank=2 scaffold_25 . exon 769008 770020 . + . ID=Physo133393.2;Parent=Physo133393;constitutive=1;ensembl_phase=1;rank=2 scaffold_25 . repeat_region 772879 772989 . ? . description=trf scaffold_25 . repeat_region 773620 773672 . ? . description=trf scaffold_25 . biological_region 773663 773666 0.999 - . logic_name=eponine scaffold_25 . biological_region 773918 773921 0.999 - . logic_name=eponine scaffold_25 . biological_region 774233 774236 0.999 - . logic_name=eponine scaffold_25 . biological_region 776485 776487 0.999 + . logic_name=eponine scaffold_25 . biological_region 776756 776761 0.999 - . logic_name=eponine scaffold_25 . biological_region 776992 776997 0.999 - . logic_name=eponine scaffold_25 . biological_region 776995 776996 0.999 + . logic_name=eponine scaffold_25 . biological_region 777035 777038 0.999 - . logic_name=eponine scaffold_25 . biological_region 777829 777832 0.999 - . logic_name=eponine scaffold_25 . biological_region 777843 777844 0.999 + . logic_name=eponine scaffold_25 . biological_region 777903 777910 0.999 + . logic_name=eponine scaffold_25 . repeat_region 777971 778001 . ? . description=trf scaffold_25 . biological_region 778026 778027 0.999 - . logic_name=eponine scaffold_25 . biological_region 778079 778084 0.999 + . logic_name=eponine scaffold_25 . biological_region 778104 778108 0.999 - . logic_name=eponine scaffold_25 . biological_region 778118 778121 0.999 - . logic_name=eponine scaffold_25 . biological_region 778136 778142 0.999 - . logic_name=eponine scaffold_25 . biological_region 778198 778202 0.999 - . logic_name=eponine scaffold_25 . biological_region 778225 778228 0.999 + . logic_name=eponine scaffold_25 . biological_region 778243 778252 0.999 - . logic_name=eponine scaffold_25 . biological_region 778271 778274 0.999 - . logic_name=eponine scaffold_25 . biological_region 778305 778306 0.999 - . logic_name=eponine scaffold_25 . biological_region 778878 778880 0.999 + . logic_name=eponine scaffold_25 . repeat_region 778908 778949 . ? . description=trf scaffold_25 . biological_region 778931 778932 0.999 + . logic_name=eponine scaffold_25 . biological_region 779154 779158 0.999 + . logic_name=eponine scaffold_25 . repeat_region 779267 779295 . ? . description=trf scaffold_25 . repeat_region 779273 779298 . ? . description=trf scaffold_25 . repeat_region 779289 779341 . ? . description=trf scaffold_25 . biological_region 779704 779708 0.999 + . logic_name=eponine scaffold_25 . biological_region 779746 779753 0.999 - . logic_name=eponine scaffold_25 . biological_region 779777 779779 0.999 - . logic_name=eponine scaffold_25 . biological_region 779931 779934 0.999 + . logic_name=eponine scaffold_25 . repeat_region 780333 780384 . ? . description=trf scaffold_25 . repeat_region 780579 780620 . ? . description=trf scaffold_25 ensembl snRNA_gene 777467 777611 . + . ID=EPrPSOG00000000062;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_25 ensembl snRNA 777467 777611 . + . ID=EPrPSOT00000000062;Parent=EPrPSOG00000000062;biotype=snRNA;logic_name=ncrna_eg scaffold_25 ensembl snRNA_gene 773083 773171 . + . ID=EPrPSOG00000000075;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_25 ensembl snRNA 773083 773171 . + . ID=EPrPSOT00000000075;Parent=EPrPSOG00000000075;biotype=snRNA;logic_name=ncrna_eg scaffold_25 ensembl snRNA_gene 772663 772807 . + . ID=EPrPSOG00000000290;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_25 ensembl snRNA 772663 772807 . + . ID=EPrPSOT00000000290;Parent=EPrPSOG00000000290;biotype=snRNA;logic_name=ncrna_eg scaffold_25 . exon 777467 777611 . + . ID=EPrPSOE00000000062;Parent=EPrPSOT00000000062;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . exon 773083 773171 . + . ID=EPrPSOE00000000075;Parent=EPrPSOT00000000075;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . exon 772663 772807 . + . ID=EPrPSOE00000000290;Parent=EPrPSOT00000000290;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 ensembl protein_coding_gene 773481 786519 . + . ID=Physo133394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_250148;logic_name=jgi_physo1_1 scaffold_25 ensembl transcript 773481 786519 . + . ID=Physo133394;Parent=Physo133394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_25 . CDS 773481 774418 . + 0 ID=Physo133394;Parent=Physo133394;rank=1 scaffold_25 . exon 773481 774418 . + . ID=Physo133394.1;Parent=Physo133394;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_25 . CDS 774474 774669 . + 0 ID=Physo133394;Parent=Physo133394;rank=2 scaffold_25 . exon 774474 774669 . + . ID=Physo133394.2;Parent=Physo133394;constitutive=1;ensembl_phase=2;rank=2 scaffold_25 . CDS 776289 777127 . + 0 ID=Physo133394;Parent=Physo133394;rank=3 scaffold_25 . exon 776289 777127 . + . ID=Physo133394.3;Parent=Physo133394;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_25 . CDS 777638 778451 . + 0 ID=Physo133394;Parent=Physo133394;rank=4 scaffold_25 . exon 777638 778451 . + . ID=Physo133394.4;Parent=Physo133394;constitutive=1;ensembl_phase=2;rank=4 scaffold_25 . CDS 778741 779506 . + 0 ID=Physo133394;Parent=Physo133394;rank=5 scaffold_25 . exon 778741 779506 . + . ID=Physo133394.5;Parent=Physo133394;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_25 . CDS 779678 780033 . + 0 ID=Physo133394;Parent=Physo133394;rank=6 scaffold_25 . exon 779678 780033 . + . ID=Physo133394.6;Parent=Physo133394;constitutive=1;ensembl_phase=1;rank=6 scaffold_25 . CDS 780081 784949 . + 0 ID=Physo133394;Parent=Physo133394;rank=7 scaffold_25 . exon 780081 784949 . + . ID=Physo133394.7;Parent=Physo133394;constitutive=1;rank=7 scaffold_25 . CDS 785251 786519 . + 0 ID=Physo133394;Parent=Physo133394;rank=8 scaffold_25 . repeat_region 784971 785197 . ? . description=dust scaffold_25 . repeat_region 787728 789801 . ? . description=dust scaffold_25 ensembl snRNA_gene 787113 787301 . + . ID=EPrPSOG00000000098;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_25 ensembl snRNA 787113 787301 . + . ID=EPrPSOT00000000098;Parent=EPrPSOG00000000098;biotype=snRNA;logic_name=ncrna_eg scaffold_25 ensembl snRNA_gene 786672 786816 . + . ID=EPrPSOG00000000148;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_25 ensembl snRNA 786672 786816 . + . ID=EPrPSOT00000000148;Parent=EPrPSOG00000000148;biotype=snRNA;logic_name=ncrna_eg scaffold_25 ensembl snRNA_gene 790352 790490 . - . ID=EPrPSOG00000000210;biotype=snRNA;description=U2 spliceosomal RNA [Source:RFAM%3BAcc:RF00004];external_name=U2;logic_name=ncrna_eg scaffold_25 ensembl snRNA 790352 790490 . - . ID=EPrPSOT00000000210;Parent=EPrPSOG00000000210;biotype=snRNA;logic_name=ncrna_eg scaffold_25 . exon 787113 787301 . + . ID=EPrPSOE00000000098;Parent=EPrPSOT00000000098;constitutive=1;rank=1 scaffold_25 . exon 786672 786816 . + . ID=EPrPSOE00000000148;Parent=EPrPSOT00000000148;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . exon 790352 790490 . - . ID=EPrPSOE00000000210;Parent=EPrPSOT00000000210;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_25 . exon 785251 786519 . + . ID=Physo133394.8;Parent=Physo133394;constitutive=1;rank=8 ##gff-version 3 ##sequence-region scaffold_22 1 794137 scaffold_22 . repeat_region 1550 1562 . ? . description=dust scaffold_22 . repeat_region 4186 7147 . ? . description=dust scaffold_22 . repeat_region 9662 9697 . ? . description=trf scaffold_22 . repeat_region 9758 9810 . ? . description=trf scaffold_22 . repeat_region 9758 9810 . ? . description=trf scaffold_22 ensembl protein_coding_gene 3945 7849 . - . ID=Physo132653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220001;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 3945 7849 . - . ID=Physo132653;Parent=Physo132653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 3945 4135 . - 0 ID=Physo132653;Parent=Physo132653;rank=2 scaffold_22 . exon 3945 4135 . - . ID=Physo132653.2;Parent=Physo132653;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 7198 7849 . - 0 ID=Physo132653;Parent=Physo132653;rank=1 scaffold_22 . exon 7198 7849 . - . ID=Physo132653.1;Parent=Physo132653;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . biological_region 11013 11013 0.999 + . logic_name=eponine scaffold_22 . biological_region 12049 12051 0.999 - . logic_name=eponine scaffold_22 . biological_region 13919 13921 0.999 + . logic_name=eponine scaffold_22 . biological_region 19105 19108 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 9957 14356 . + . ID=Physo132654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220002;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 9957 14356 . + . ID=Physo132654;Parent=Physo132654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 9957 12152 . + 0 ID=Physo132654;Parent=Physo132654;rank=1 scaffold_22 . exon 9957 12152 . + . ID=Physo132654.1;Parent=Physo132654;constitutive=1;rank=1 scaffold_22 . CDS 12266 12321 . + 0 ID=Physo132654;Parent=Physo132654;rank=2 scaffold_22 . exon 12266 12321 . + . ID=Physo132654.2;Parent=Physo132654;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 12417 12845 . + 0 ID=Physo132654;Parent=Physo132654;rank=3 scaffold_22 . exon 12417 12845 . + . ID=Physo132654.3;Parent=Physo132654;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . CDS 12880 14071 . + 0 ID=Physo132654;Parent=Physo132654;rank=4 scaffold_22 . exon 12880 14071 . + . ID=Physo132654.4;Parent=Physo132654;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 14336 14356 . + 0 ID=Physo132654;Parent=Physo132654;rank=5 scaffold_22 . exon 14336 14356 . + . ID=Physo132654.5;Parent=Physo132654;constitutive=1;rank=5 scaffold_22 . repeat_region 26411 26441 . ? . description=dust scaffold_22 ensembl protein_coding_gene 25486 26337 . + . ID=Physo132655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220003;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 25486 26337 . + . ID=Physo132655;Parent=Physo132655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 25486 25604 . + 0 ID=Physo132655;Parent=Physo132655;rank=1 scaffold_22 . exon 25486 25604 . + . ID=Physo132655.1;Parent=Physo132655;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 25723 25965 . + 0 ID=Physo132655;Parent=Physo132655;rank=2 scaffold_22 . exon 25723 25965 . + . ID=Physo132655.2;Parent=Physo132655;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 26214 26337 . + 0 ID=Physo132655;Parent=Physo132655;rank=3 scaffold_22 . exon 26214 26337 . + . ID=Physo132655.3;Parent=Physo132655;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . biological_region 29835 29836 0.999 + . logic_name=eponine scaffold_22 . biological_region 29915 29921 0.999 - . logic_name=eponine scaffold_22 . biological_region 29931 29936 0.999 - . logic_name=eponine scaffold_22 . biological_region 31095 31097 0.999 + . logic_name=eponine scaffold_22 . biological_region 31211 31214 0.999 - . logic_name=eponine scaffold_22 . biological_region 31665 31668 0.999 + . logic_name=eponine scaffold_22 . repeat_region 32351 32389 . ? . description=trf scaffold_22 . biological_region 32376 32379 0.999 - . logic_name=eponine scaffold_22 . biological_region 33632 33633 0.999 + . logic_name=eponine scaffold_22 . biological_region 33727 33729 0.999 - . logic_name=eponine scaffold_22 . biological_region 33745 33751 0.999 - . logic_name=eponine scaffold_22 . biological_region 33999 34003 0.999 - . logic_name=eponine scaffold_22 . biological_region 34506 34508 0.999 - . logic_name=eponine scaffold_22 . biological_region 37881 37881 0.999 + . logic_name=eponine scaffold_22 . biological_region 37898 37899 0.999 + . logic_name=eponine scaffold_22 . biological_region 37951 37956 0.999 - . logic_name=eponine scaffold_22 . biological_region 37960 37960 0.999 + . logic_name=eponine scaffold_22 . biological_region 38065 38067 0.999 - . logic_name=eponine scaffold_22 . biological_region 38269 38272 0.999 + . logic_name=eponine scaffold_22 . biological_region 38284 38285 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 37790 40229 . - . ID=Physo108640;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_220001;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 37790 40229 . - . ID=Physo108640;Parent=Physo108640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 37790 38023 . - . ID=Physo108640.3;Parent=Physo108640;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_22 . CDS 37866 38023 . - 0 ID=Physo108640;Parent=Physo108640;rank=3 scaffold_22 . CDS 38066 39563 . - 0 ID=Physo108640;Parent=Physo108640;rank=2 scaffold_22 . exon 38066 39563 . - . ID=Physo108640.2;Parent=Physo108640;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 39642 40229 . - 0 ID=Physo108640;Parent=Physo108640;rank=1 scaffold_22 . exon 39642 40229 . - . ID=Physo108640.1;Parent=Physo108640;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 31192 32576 . + . ID=Physo132656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220004;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 31192 32576 . + . ID=Physo132656;Parent=Physo132656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 31192 31204 . + 0 ID=Physo132656;Parent=Physo132656;rank=1 scaffold_22 . exon 31192 31204 . + . ID=Physo132656.1;Parent=Physo132656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 31341 32533 . + 0 ID=Physo132656;Parent=Physo132656;rank=2 scaffold_22 . exon 31341 32576 . + . ID=Physo132656.2;Parent=Physo132656;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_22 ensembl protein_coding_gene 32934 34210 . - . ID=Physo132657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220005;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 32934 34210 . - . ID=Physo132657;Parent=Physo132657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 32934 34025 . - . ID=Physo132657.2;Parent=Physo132657;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_22 . CDS 32997 34025 . - 0 ID=Physo132657;Parent=Physo132657;rank=2 scaffold_22 . CDS 34196 34210 . - 0 ID=Physo132657;Parent=Physo132657;rank=1 scaffold_22 . exon 34196 34210 . - . ID=Physo132657.1;Parent=Physo132657;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 35533 37575 . + . ID=Physo132658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220006;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 35533 37575 . + . ID=Physo132658;Parent=Physo132658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 35533 35948 . + 0 ID=Physo132658;Parent=Physo132658;rank=1 scaffold_22 . exon 35533 35948 . + . ID=Physo132658.1;Parent=Physo132658;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 36020 36428 . + 0 ID=Physo132658;Parent=Physo132658;rank=2 scaffold_22 . exon 36020 36428 . + . ID=Physo132658.2;Parent=Physo132658;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 36573 37438 . + 0 ID=Physo132658;Parent=Physo132658;rank=3 scaffold_22 . exon 36573 37438 . + . ID=Physo132658.3;Parent=Physo132658;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_22 . CDS 37566 37575 . + 0 ID=Physo132658;Parent=Physo132658;rank=4 scaffold_22 . exon 37566 37575 . + . ID=Physo132658.4;Parent=Physo132658;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . repeat_region 40492 40501 . ? . description=dust scaffold_22 . repeat_region 41317 41325 . ? . description=dust scaffold_22 . repeat_region 46706 47215 . + . description=Polinton-1_PI scaffold_22 . repeat_region 48280 51891 . + . description=Polinton-1_PI scaffold_22 . repeat_region 48527 48534 . ? . description=dust scaffold_22 ensembl protein_coding_gene 40570 40956 . - . ID=Physo132660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220008;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 40570 40956 . - . ID=Physo132660;Parent=Physo132660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 40570 40694 . - 0 ID=Physo132660;Parent=Physo132660;rank=2 scaffold_22 . exon 40570 40694 . - . ID=Physo132660.2;Parent=Physo132660;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 40722 40956 . - 0 ID=Physo132660;Parent=Physo132660;rank=1 scaffold_22 . exon 40722 40956 . - . ID=Physo132660.1;Parent=Physo132660;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 42351 46060 . - . ID=Physo132661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220009;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 42351 46060 . - . ID=Physo132661;Parent=Physo132661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 42351 42936 . - 0 ID=Physo132661;Parent=Physo132661;rank=4 scaffold_22 . exon 42351 42936 . - . ID=Physo132661.4;Parent=Physo132661;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 43010 43098 . - 0 ID=Physo132661;Parent=Physo132661;rank=3 scaffold_22 . exon 43010 43098 . - . ID=Physo132661.3;Parent=Physo132661;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_22 . CDS 43165 43313 . - 0 ID=Physo132661;Parent=Physo132661;rank=2 scaffold_22 . exon 43165 43313 . - . ID=Physo132661.2;Parent=Physo132661;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 43396 46060 . - 0 ID=Physo132661;Parent=Physo132661;rank=1 scaffold_22 . exon 43396 46060 . - . ID=Physo132661.1;Parent=Physo132661;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 46322 46696 . + . ID=Physo132662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220010;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 46322 46696 . + . ID=Physo132662;Parent=Physo132662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 46322 46696 . + 0 ID=Physo132662;Parent=Physo132662;rank=1 scaffold_22 . exon 46322 46696 . + . ID=Physo132662.1;Parent=Physo132662;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 47054 48100 . + . ID=Physo132663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220011;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 47054 48100 . + . ID=Physo132663;Parent=Physo132663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 47054 47164 . + . ID=Physo132663.1;Parent=Physo132663;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 47060 47164 . + 0 ID=Physo132663;Parent=Physo132663;rank=1 scaffold_22 . CDS 47189 47215 . + 0 ID=Physo132663;Parent=Physo132663;rank=2 scaffold_22 . exon 47189 47215 . + . ID=Physo132663.2;Parent=Physo132663;constitutive=1;rank=2 scaffold_22 . CDS 47369 48100 . + 0 ID=Physo132663;Parent=Physo132663;rank=3 scaffold_22 . exon 47369 48100 . + . ID=Physo132663.3;Parent=Physo132663;constitutive=1;rank=3 scaffold_22 ensembl protein_coding_gene 48972 51969 . + . ID=Physo132664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220012;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 48972 51969 . + . ID=Physo132664;Parent=Physo132664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 48972 49346 . + 0 ID=Physo132664;Parent=Physo132664;rank=1 scaffold_22 . exon 48972 49346 . + . ID=Physo132664.1;Parent=Physo132664;constitutive=1;rank=1 scaffold_22 . CDS 49573 51403 . + 0 ID=Physo132664;Parent=Physo132664;rank=2 scaffold_22 . exon 49573 51403 . + . ID=Physo132664.2;Parent=Physo132664;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 51577 51929 . + 0 ID=Physo132664;Parent=Physo132664;rank=3 scaffold_22 . CDS 51958 51969 . + 0 ID=Physo132664;Parent=Physo132664;rank=4 scaffold_22 . exon 51577 51929 . + . ID=Physo132664.3;Parent=Physo132664;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . exon 51958 51969 . + . ID=Physo132664.4;Parent=Physo132664;constitutive=1;rank=4 scaffold_22 . repeat_region 60279 60328 . ? . description=dust scaffold_22 . repeat_region 60330 61201 . + . description=Polinton-1_PI scaffold_22 . repeat_region 61202 61251 . ? . description=dust scaffold_22 . repeat_region 61587 66916 . + . description=Polinton-1_PI scaffold_22 . repeat_region 66297 66304 . ? . description=dust scaffold_22 . biological_region 67044 67051 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 67550 69870 . - . ID=Physo132665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220013;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 67550 69870 . - . ID=Physo132665;Parent=Physo132665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 67550 69250 . - 0 ID=Physo132665;Parent=Physo132665;rank=2 scaffold_22 . exon 67550 69250 . - . ID=Physo132665.2;Parent=Physo132665;constitutive=1;rank=2 scaffold_22 . CDS 69325 69870 . - 0 ID=Physo132665;Parent=Physo132665;rank=1 scaffold_22 . exon 69325 69870 . - . ID=Physo132665.1;Parent=Physo132665;constitutive=1;rank=1 scaffold_22 . repeat_region 73839 73865 . ? . description=trf scaffold_22 . repeat_region 78143 78227 . ? . description=trf scaffold_22 . repeat_region 78203 78226 . ? . description=trf scaffold_22 . repeat_region 78437 78459 . ? . description=trf scaffold_22 ensembl protein_coding_gene 73594 75381 . + . ID=Physo108641;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_220002;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 73594 75381 . + . ID=Physo108641;Parent=Physo108641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 73594 73822 . + . ID=Physo108641.1;Parent=Physo108641;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 73637 73822 . + 0 ID=Physo108641;Parent=Physo108641;rank=1 scaffold_22 . CDS 73920 74182 . + 0 ID=Physo108641;Parent=Physo108641;rank=2 scaffold_22 . exon 73920 74182 . + . ID=Physo108641.2;Parent=Physo108641;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 74278 74437 . + 0 ID=Physo108641;Parent=Physo108641;rank=3 scaffold_22 . exon 74278 74437 . + . ID=Physo108641.3;Parent=Physo108641;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 74518 74617 . + 0 ID=Physo108641;Parent=Physo108641;rank=4 scaffold_22 . exon 74518 74617 . + . ID=Physo108641.4;Parent=Physo108641;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_22 . CDS 74696 75264 . + 0 ID=Physo108641;Parent=Physo108641;rank=5 scaffold_22 . exon 74696 75381 . + . ID=Physo108641.5;Parent=Physo108641;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_22 ensembl protein_coding_gene 70888 71499 . + . ID=Physo132666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220014;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 70888 71499 . + . ID=Physo132666;Parent=Physo132666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 70888 71499 . + 0 ID=Physo132666;Parent=Physo132666;rank=1 scaffold_22 . exon 70888 71499 . + . ID=Physo132666.1;Parent=Physo132666;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 71852 73119 . + . ID=Physo132667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220015;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 71852 73119 . + . ID=Physo132667;Parent=Physo132667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 71852 72010 . + 0 ID=Physo132667;Parent=Physo132667;rank=1 scaffold_22 . exon 71852 72010 . + . ID=Physo132667.1;Parent=Physo132667;constitutive=1;rank=1 scaffold_22 . CDS 72088 72171 . + 0 ID=Physo132667;Parent=Physo132667;rank=2 scaffold_22 . exon 72088 72171 . + . ID=Physo132667.2;Parent=Physo132667;constitutive=1;rank=2 scaffold_22 . CDS 72249 72590 . + 0 ID=Physo132667;Parent=Physo132667;rank=3 scaffold_22 . exon 72249 72590 . + . ID=Physo132667.3;Parent=Physo132667;constitutive=1;rank=3 scaffold_22 . CDS 72730 73119 . + 0 ID=Physo132667;Parent=Physo132667;rank=4 scaffold_22 . exon 72730 73119 . + . ID=Physo132667.4;Parent=Physo132667;constitutive=1;rank=4 scaffold_22 ensembl protein_coding_gene 75388 78414 . - . ID=Physo132669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220017;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 75388 78414 . - . ID=Physo132669;Parent=Physo132669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 75388 78414 . - 0 ID=Physo132669;Parent=Physo132669;rank=1 scaffold_22 . exon 75388 78414 . - . ID=Physo132669.1;Parent=Physo132669;constitutive=1;rank=1 scaffold_22 . repeat_region 80855 80867 . ? . description=dust scaffold_22 . biological_region 86044 86046 0.999 + . logic_name=eponine scaffold_22 . biological_region 87135 87137 0.999 - . logic_name=eponine scaffold_22 . biological_region 89340 89342 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 84946 86497 . - . ID=Physo132670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220018;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 84946 86497 . - . ID=Physo132670;Parent=Physo132670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 84946 85370 . - 0 ID=Physo132670;Parent=Physo132670;rank=3 scaffold_22 . exon 84946 85370 . - . ID=Physo132670.3;Parent=Physo132670;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 85482 86397 . - 0 ID=Physo132670;Parent=Physo132670;rank=2 scaffold_22 . exon 85482 86397 . - . ID=Physo132670.2;Parent=Physo132670;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 86465 86497 . - 0 ID=Physo132670;Parent=Physo132670;rank=1 scaffold_22 . exon 86465 86497 . - . ID=Physo132670.1;Parent=Physo132670;constitutive=1;rank=1 scaffold_22 . repeat_region 89623 89869 . ? . description=trf scaffold_22 . repeat_region 90521 92883 . + . description=GypsyPi-1c_I-int scaffold_22 . repeat_region 97439 97518 . ? . description=trf scaffold_22 . repeat_region 97444 97509 . ? . description=trf scaffold_22 . repeat_region 98488 98559 . ? . description=trf scaffold_22 ensembl protein_coding_gene 90150 93185 . + . ID=Physo132671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220019;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 90150 93185 . + . ID=Physo132671;Parent=Physo132671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 90150 90229 . + 0 ID=Physo132671;Parent=Physo132671;rank=1 scaffold_22 . exon 90150 90229 . + . ID=Physo132671.1;Parent=Physo132671;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 90371 91663 . + 0 ID=Physo132671;Parent=Physo132671;rank=2 scaffold_22 . exon 90371 91663 . + . ID=Physo132671.2;Parent=Physo132671;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 91726 92302 . + 0 ID=Physo132671;Parent=Physo132671;rank=3 scaffold_22 . exon 91726 92302 . + . ID=Physo132671.3;Parent=Physo132671;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 92372 92536 . + 0 ID=Physo132671;Parent=Physo132671;rank=4 scaffold_22 . exon 92372 92536 . + . ID=Physo132671.4;Parent=Physo132671;constitutive=1;rank=4 scaffold_22 . CDS 92661 93185 . + 0 ID=Physo132671;Parent=Physo132671;rank=5 scaffold_22 . exon 92661 93185 . + . ID=Physo132671.5;Parent=Physo132671;constitutive=1;rank=5 scaffold_22 ensembl protein_coding_gene 93447 94960 . - . ID=Physo132672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220020;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 93447 94960 . - . ID=Physo132672;Parent=Physo132672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 93447 93641 . - 0 ID=Physo132672;Parent=Physo132672;rank=4 scaffold_22 . exon 93447 93641 . - . ID=Physo132672.4;Parent=Physo132672;constitutive=1;rank=4 scaffold_22 . CDS 93706 93762 . - 0 ID=Physo132672;Parent=Physo132672;rank=3 scaffold_22 . exon 93706 93762 . - . ID=Physo132672.3;Parent=Physo132672;constitutive=1;rank=3 scaffold_22 . CDS 93974 94391 . - 0 ID=Physo132672;Parent=Physo132672;rank=2 scaffold_22 . exon 93974 94391 . - . ID=Physo132672.2;Parent=Physo132672;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 94464 94960 . - 0 ID=Physo132672;Parent=Physo132672;rank=1 scaffold_22 . exon 94464 94960 . - . ID=Physo132672.1;Parent=Physo132672;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 95878 98097 . + . ID=Physo132673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220021;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 95878 98097 . + . ID=Physo132673;Parent=Physo132673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 95878 96222 . + 0 ID=Physo132673;Parent=Physo132673;rank=1 scaffold_22 . exon 95878 96222 . + . ID=Physo132673.1;Parent=Physo132673;constitutive=1;rank=1 scaffold_22 . CDS 96499 98097 . + 0 ID=Physo132673;Parent=Physo132673;rank=2 scaffold_22 . exon 96499 98097 . + . ID=Physo132673.2;Parent=Physo132673;constitutive=1;rank=2 scaffold_22 . repeat_region 101481 101530 . ? . description=dust scaffold_22 . repeat_region 102668 110428 . ? . description=dust scaffold_22 ensembl protein_coding_gene 99309 102452 . + . ID=Physo132674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220022;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 99309 102452 . + . ID=Physo132674;Parent=Physo132674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 99309 100687 . + 0 ID=Physo132674;Parent=Physo132674;rank=1 scaffold_22 . exon 99309 100687 . + . ID=Physo132674.1;Parent=Physo132674;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 100930 101270 . + 0 ID=Physo132674;Parent=Physo132674;rank=2 scaffold_22 . exon 100930 101270 . + . ID=Physo132674.2;Parent=Physo132674;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 101614 102452 . + 0 ID=Physo132674;Parent=Physo132674;rank=3 scaffold_22 . exon 101614 102452 . + . ID=Physo132674.3;Parent=Physo132674;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . biological_region 111263 111270 0.999 - . logic_name=eponine scaffold_22 . biological_region 111291 111291 0.999 - . logic_name=eponine scaffold_22 . biological_region 113174 113177 0.999 + . logic_name=eponine scaffold_22 . repeat_region 113191 113262 . ? . description=trf scaffold_22 . repeat_region 115091 115220 . ? . description=trf scaffold_22 . repeat_region 115194 115252 . ? . description=trf scaffold_22 . repeat_region 115205 115255 . ? . description=trf scaffold_22 . repeat_region 115205 115265 . ? . description=trf scaffold_22 . biological_region 116632 116634 0.999 - . logic_name=eponine scaffold_22 . biological_region 117286 117291 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 110699 112461 . + . ID=Physo132675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220023;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 110699 112461 . + . ID=Physo132675;Parent=Physo132675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 110699 111456 . + 0 ID=Physo132675;Parent=Physo132675;rank=1 scaffold_22 . exon 110699 111456 . + . ID=Physo132675.1;Parent=Physo132675;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 111573 112238 . + 0 ID=Physo132675;Parent=Physo132675;rank=2 scaffold_22 . exon 111573 112238 . + . ID=Physo132675.2;Parent=Physo132675;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 112365 112461 . + 0 ID=Physo132675;Parent=Physo132675;rank=3 scaffold_22 . exon 112365 112461 . + . ID=Physo132675.3;Parent=Physo132675;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 ensembl protein_coding_gene 115468 116609 . - . ID=Physo132676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220024;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 115468 116609 . - . ID=Physo132676;Parent=Physo132676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 115468 115526 . - 0 ID=Physo132676;Parent=Physo132676;rank=2 scaffold_22 . exon 115468 115526 . - . ID=Physo132676.2;Parent=Physo132676;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 115697 116609 . - 0 ID=Physo132676;Parent=Physo132676;rank=1 scaffold_22 . exon 115697 116609 . - . ID=Physo132676.1;Parent=Physo132676;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 117294 118702 . - . ID=Physo132677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220025;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 117294 118702 . - . ID=Physo132677;Parent=Physo132677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 117294 117903 . - 0 ID=Physo132677;Parent=Physo132677;rank=3 scaffold_22 . exon 117294 117903 . - . ID=Physo132677.3;Parent=Physo132677;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 118092 118154 . - 0 ID=Physo132677;Parent=Physo132677;rank=2 scaffold_22 . exon 118092 118154 . - . ID=Physo132677.2;Parent=Physo132677;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 118509 118702 . - 0 ID=Physo132677;Parent=Physo132677;rank=1 scaffold_22 . exon 118509 118702 . - . ID=Physo132677.1;Parent=Physo132677;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . repeat_region 119704 119753 . ? . description=dust scaffold_22 . repeat_region 121003 121011 . ? . description=dust scaffold_22 . repeat_region 123495 123502 . ? . description=dust scaffold_22 . repeat_region 126132 126148 . ? . description=dust scaffold_22 ensembl protein_coding_gene 123727 124354 . + . ID=Physo132678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220026;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 123727 124354 . + . ID=Physo132678;Parent=Physo132678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 123727 123878 . + 0 ID=Physo132678;Parent=Physo132678;rank=1 scaffold_22 . exon 123727 123878 . + . ID=Physo132678.1;Parent=Physo132678;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 123908 123987 . + 0 ID=Physo132678;Parent=Physo132678;rank=2 scaffold_22 . exon 123908 123987 . + . ID=Physo132678.2;Parent=Physo132678;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 124080 124354 . + 0 ID=Physo132678;Parent=Physo132678;rank=3 scaffold_22 . exon 124080 124354 . + . ID=Physo132678.3;Parent=Physo132678;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 ensembl protein_coding_gene 126191 132008 . + . ID=Physo132679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220027;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 126191 132008 . + . ID=Physo132679;Parent=Physo132679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 126191 131911 . + 0 ID=Physo132679;Parent=Physo132679;rank=1 scaffold_22 . exon 126191 132008 . + . ID=Physo132679.1;Parent=Physo132679;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_22 . repeat_region 128910 129215 . ? . description=trf scaffold_22 . repeat_region 129158 129315 . ? . description=trf scaffold_22 . repeat_region 129232 129261 . ? . description=trf scaffold_22 . repeat_region 129313 129350 . ? . description=trf scaffold_22 . repeat_region 129347 129374 . ? . description=trf scaffold_22 . repeat_region 129538 129560 . ? . description=trf scaffold_22 . repeat_region 129563 129593 . ? . description=trf scaffold_22 . repeat_region 129663 130531 . ? . description=trf scaffold_22 . biological_region 131589 131593 0.999 + . logic_name=eponine scaffold_22 . biological_region 131693 131696 0.999 - . logic_name=eponine scaffold_22 . biological_region 131699 131705 0.999 + . logic_name=eponine scaffold_22 . biological_region 133242 133246 0.999 + . logic_name=eponine scaffold_22 . biological_region 133263 133271 0.999 + . logic_name=eponine scaffold_22 . biological_region 133362 133362 0.999 + . logic_name=eponine scaffold_22 . biological_region 133396 133404 0.999 + . logic_name=eponine scaffold_22 . repeat_region 133993 134038 . ? . description=trf scaffold_22 . repeat_region 134219 134296 . ? . description=trf scaffold_22 . biological_region 135646 135649 0.999 + . logic_name=eponine scaffold_22 . biological_region 135797 135800 0.999 + . logic_name=eponine scaffold_22 . biological_region 136107 136111 0.999 - . logic_name=eponine scaffold_22 . biological_region 136112 136120 0.999 + . logic_name=eponine scaffold_22 . biological_region 136150 136151 0.999 + . logic_name=eponine scaffold_22 . biological_region 136153 136156 0.999 - . logic_name=eponine scaffold_22 . biological_region 136203 136207 0.999 + . logic_name=eponine scaffold_22 . biological_region 136236 136237 0.999 + . logic_name=eponine scaffold_22 . biological_region 136269 136275 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 133274 134953 . + . ID=Physo132680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220028;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 133274 134953 . + . ID=Physo132680;Parent=Physo132680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 133274 134953 . + 0 ID=Physo132680;Parent=Physo132680;rank=1 scaffold_22 . exon 133274 134953 . + . ID=Physo132680.1;Parent=Physo132680;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 135120 140115 . - . ID=Physo132681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220029;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 135120 140115 . - . ID=Physo132681;Parent=Physo132681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 135120 135476 . - 0 ID=Physo132681;Parent=Physo132681;rank=7 scaffold_22 . exon 135120 135476 . - . ID=Physo132681.7;Parent=Physo132681;constitutive=1;rank=7 scaffold_22 . CDS 135547 136416 . - 0 ID=Physo132681;Parent=Physo132681;rank=6 scaffold_22 . exon 135547 136416 . - . ID=Physo132681.6;Parent=Physo132681;constitutive=1;rank=6 scaffold_22 . CDS 136442 136478 . - 0 ID=Physo132681;Parent=Physo132681;rank=5 scaffold_22 . exon 136442 136478 . - . ID=Physo132681.5;Parent=Physo132681;constitutive=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 136577 138566 . - 0 ID=Physo132681;Parent=Physo132681;rank=4 scaffold_22 . exon 136577 138566 . - . ID=Physo132681.4;Parent=Physo132681;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_22 . CDS 138639 138771 . - 0 ID=Physo132681;Parent=Physo132681;rank=3 scaffold_22 . exon 138639 138771 . - . ID=Physo132681.3;Parent=Physo132681;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_22 . CDS 138853 139251 . - 0 ID=Physo132681;Parent=Physo132681;rank=2 scaffold_22 . exon 138853 139251 . - . ID=Physo132681.2;Parent=Physo132681;constitutive=1;rank=2 scaffold_22 . CDS 139330 140115 . - 0 ID=Physo132681;Parent=Physo132681;rank=1 scaffold_22 ensembl protein_coding_gene 143879 145399 . + . ID=Physo114871;biotype=protein_coding;external_name=estExt_Genewise1.C_220139;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 143879 145399 . + . ID=Physo114871;Parent=Physo114871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 143879 145260 . + . ID=Physo114871.1;Parent=Physo114871;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_22 . CDS 143903 145260 . + 0 ID=Physo114871;Parent=Physo114871;rank=1 scaffold_22 . CDS 145300 145399 . + 0 ID=Physo114871;Parent=Physo114871;rank=2 scaffold_22 . exon 145300 145399 . + . ID=Physo114871.2;Parent=Physo114871;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . exon 139330 140115 . - . ID=Physo132681.1;Parent=Physo132681;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 140570 142024 . - . ID=Physo132682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220030;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 140570 142024 . - . ID=Physo132682;Parent=Physo132682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 140570 141188 . - 0 ID=Physo132682;Parent=Physo132682;rank=2 scaffold_22 . exon 140570 141188 . - . ID=Physo132682.2;Parent=Physo132682;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 141237 142024 . - 0 ID=Physo132682;Parent=Physo132682;rank=1 scaffold_22 . exon 141237 142024 . - . ID=Physo132682.1;Parent=Physo132682;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 142355 142872 . + . ID=Physo132683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220031;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 142355 142872 . + . ID=Physo132683;Parent=Physo132683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 142355 142365 . + 0 ID=Physo132683;Parent=Physo132683;rank=1 scaffold_22 . exon 142355 142365 . + . ID=Physo132683.1;Parent=Physo132683;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 142443 142872 . + 0 ID=Physo132683;Parent=Physo132683;rank=2 scaffold_22 . exon 142443 142872 . + . ID=Physo132683.2;Parent=Physo132683;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 145584 146224 . - . ID=Physo132685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220033;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 145584 146224 . - . ID=Physo132685;Parent=Physo132685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 145584 145655 . - . ID=Physo132685.4;Parent=Physo132685;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_22 . CDS 145585 145655 . - 0 ID=Physo132685;Parent=Physo132685;rank=4 scaffold_22 . CDS 145730 145790 . - 0 ID=Physo132685;Parent=Physo132685;rank=3 scaffold_22 . exon 145730 145790 . - . ID=Physo132685.3;Parent=Physo132685;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_22 . CDS 145850 146066 . - 0 ID=Physo132685;Parent=Physo132685;rank=2 scaffold_22 . exon 145850 146066 . - . ID=Physo132685.2;Parent=Physo132685;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 146155 146222 . - 0 ID=Physo132685;Parent=Physo132685;rank=1 scaffold_22 . exon 146155 146224 . - . ID=Physo132685.1;Parent=Physo132685;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 146314 147729 . - . ID=Physo132686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220034;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 146314 147729 . - . ID=Physo132686;Parent=Physo132686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 146314 146700 . - . ID=Physo132686.5;Parent=Physo132686;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_22 . CDS 146419 146700 . - 0 ID=Physo132686;Parent=Physo132686;rank=5 scaffold_22 . CDS 146881 147023 . - 0 ID=Physo132686;Parent=Physo132686;rank=4 scaffold_22 . exon 146881 147023 . - . ID=Physo132686.4;Parent=Physo132686;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 147100 147156 . - 0 ID=Physo132686;Parent=Physo132686;rank=3 scaffold_22 . exon 147100 147156 . - . ID=Physo132686.3;Parent=Physo132686;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 147236 147356 . - 0 ID=Physo132686;Parent=Physo132686;rank=2 scaffold_22 . exon 147236 147356 . - . ID=Physo132686.2;Parent=Physo132686;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 147421 147729 . - 0 ID=Physo132686;Parent=Physo132686;rank=1 scaffold_22 . exon 147421 147729 . - . ID=Physo132686.1;Parent=Physo132686;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 148109 149555 . - . ID=Physo132687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220035;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 148109 149555 . - . ID=Physo132687;Parent=Physo132687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 148109 148311 . - . ID=Physo132687.6;Parent=Physo132687;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_22 . CDS 148195 148311 . - 0 ID=Physo132687;Parent=Physo132687;rank=6 scaffold_22 . CDS 148410 148750 . - 0 ID=Physo132687;Parent=Physo132687;rank=5 scaffold_22 . exon 148410 148750 . - . ID=Physo132687.5;Parent=Physo132687;constitutive=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 148829 148953 . - 0 ID=Physo132687;Parent=Physo132687;rank=4 scaffold_22 . exon 148829 148953 . - . ID=Physo132687.4;Parent=Physo132687;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 149103 149240 . - 0 ID=Physo132687;Parent=Physo132687;rank=3 scaffold_22 . CDS 149309 149373 . - 0 ID=Physo132687;Parent=Physo132687;rank=2 scaffold_22 . CDS 149460 149555 . - 0 ID=Physo132687;Parent=Physo132687;rank=1 scaffold_22 . biological_region 149682 149684 0.999 + . logic_name=eponine scaffold_22 . biological_region 150327 150328 0.999 + . logic_name=eponine scaffold_22 . biological_region 150404 150410 0.999 - . logic_name=eponine scaffold_22 . biological_region 150460 150465 0.999 + . logic_name=eponine scaffold_22 . biological_region 150467 150476 0.999 - . logic_name=eponine scaffold_22 . repeat_region 150711 150740 . ? . description=dust scaffold_22 . biological_region 150882 150884 0.999 + . logic_name=eponine scaffold_22 . biological_region 151472 151474 0.999 + . logic_name=eponine scaffold_22 . biological_region 155127 155130 0.999 - . logic_name=eponine scaffold_22 . biological_region 156356 156362 0.999 + . logic_name=eponine scaffold_22 . repeat_region 156470 156513 . ? . description=trf scaffold_22 . biological_region 157015 157018 0.999 - . logic_name=eponine scaffold_22 . biological_region 157272 157276 0.999 + . logic_name=eponine scaffold_22 . biological_region 157375 157382 0.999 - . logic_name=eponine scaffold_22 . biological_region 157764 157766 0.999 + . logic_name=eponine scaffold_22 . biological_region 157787 157789 0.999 + . logic_name=eponine scaffold_22 . biological_region 157807 157811 0.999 + . logic_name=eponine scaffold_22 . biological_region 158394 158395 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 155556 156362 . + . ID=Physo108642;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_220003;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 155556 156362 . + . ID=Physo108642;Parent=Physo108642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 155556 155681 . + . ID=Physo108642.1;Parent=Physo108642;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 155573 155681 . + 0 ID=Physo108642;Parent=Physo108642;rank=1 scaffold_22 . CDS 155751 155812 . + 0 ID=Physo108642;Parent=Physo108642;rank=2 scaffold_22 . exon 155751 155812 . + . ID=Physo108642.2;Parent=Physo108642;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 155891 155972 . + 0 ID=Physo108642;Parent=Physo108642;rank=3 scaffold_22 . exon 155891 155972 . + . ID=Physo108642.3;Parent=Physo108642;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_22 . CDS 156044 156282 . + 0 ID=Physo108642;Parent=Physo108642;rank=4 scaffold_22 . exon 156044 156362 . + . ID=Physo108642.4;Parent=Physo108642;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_22 ensembl protein_coding_gene 150574 154087 . + . ID=Physo114884;biotype=protein_coding;external_name=estExt_Genewise1.C_220152;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 150574 154087 . + . ID=Physo114884;Parent=Physo114884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 150574 150690 . + . ID=Physo114884.1;Parent=Physo114884;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 150595 150690 . + 0 ID=Physo114884;Parent=Physo114884;rank=1 scaffold_22 . CDS 150771 150835 . + 0 ID=Physo114884;Parent=Physo114884;rank=2 scaffold_22 . exon 150771 150835 . + . ID=Physo114884.2;Parent=Physo114884;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 150911 151007 . + 0 ID=Physo114884;Parent=Physo114884;rank=3 scaffold_22 . exon 150911 151007 . + . ID=Physo114884.3;Parent=Physo114884;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 151082 151144 . + 0 ID=Physo114884;Parent=Physo114884;rank=4 scaffold_22 . exon 151082 151144 . + . ID=Physo114884.4;Parent=Physo114884;constitutive=1;rank=4 scaffold_22 . CDS 151226 151322 . + 0 ID=Physo114884;Parent=Physo114884;rank=5 scaffold_22 . exon 151226 151322 . + . ID=Physo114884.5;Parent=Physo114884;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_22 . CDS 151424 151772 . + 0 ID=Physo114884;Parent=Physo114884;rank=6 scaffold_22 . exon 151424 151772 . + . ID=Physo114884.6;Parent=Physo114884;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_22 . CDS 154039 154087 . + 0 ID=Physo114884;Parent=Physo114884;rank=7 scaffold_22 . exon 154039 154087 . + . ID=Physo114884.7;Parent=Physo114884;constitutive=1;ensembl_phase=2;rank=7 scaffold_22 ensembl protein_coding_gene 158306 159030 . - . ID=Physo114894;biotype=protein_coding;external_name=estExt_Genewise1.C_220162;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 158306 159030 . - . ID=Physo114894;Parent=Physo114894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 158306 158516 . - . ID=Physo114894.4;Parent=Physo114894;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_22 . CDS 158484 158516 . - 0 ID=Physo114894;Parent=Physo114894;rank=4 scaffold_22 . CDS 158604 158676 . - 0 ID=Physo114894;Parent=Physo114894;rank=3 scaffold_22 . exon 158604 158676 . - . ID=Physo114894.3;Parent=Physo114894;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 158779 158806 . - 0 ID=Physo114894;Parent=Physo114894;rank=2 scaffold_22 . exon 158779 158806 . - . ID=Physo114894.2;Parent=Physo114894;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . CDS 158922 158976 . - 0 ID=Physo114894;Parent=Physo114894;rank=1 scaffold_22 . exon 149103 149240 . - . ID=Physo132687.3;Parent=Physo132687;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . exon 149309 149373 . - . ID=Physo132687.2;Parent=Physo132687;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . exon 149460 149555 . - . ID=Physo132687.1;Parent=Physo132687;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 156388 157599 . - . ID=Physo132691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220039;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 156388 157599 . - . ID=Physo132691;Parent=Physo132691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 156388 157102 . - 0 ID=Physo132691;Parent=Physo132691;rank=2 scaffold_22 . exon 156388 157102 . - . ID=Physo132691.2;Parent=Physo132691;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 157178 157599 . - 0 ID=Physo132691;Parent=Physo132691;rank=1 scaffold_22 . exon 157178 157599 . - . ID=Physo132691.1;Parent=Physo132691;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 157782 158269 . + . ID=Physo132692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220040;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 157782 158269 . + . ID=Physo132692;Parent=Physo132692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 157782 158269 . + . ID=Physo132692.1;Parent=Physo132692;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 157784 158158 . + 0 ID=Physo132692;Parent=Physo132692;rank=1 scaffold_22 ensembl protein_coding_gene 161216 162427 . + . ID=Physo108643;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_220004;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 161216 162427 . + . ID=Physo108643;Parent=Physo108643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 161216 161384 . + . ID=Physo108643.1;Parent=Physo108643;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 161246 161384 . + 0 ID=Physo108643;Parent=Physo108643;rank=1 scaffold_22 . CDS 161449 162053 . + 0 ID=Physo108643;Parent=Physo108643;rank=2 scaffold_22 . exon 161449 162053 . + . ID=Physo108643.2;Parent=Physo108643;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 162153 162344 . + 0 ID=Physo108643;Parent=Physo108643;rank=3 scaffold_22 . exon 162153 162427 . + . ID=Physo108643.3;Parent=Physo108643;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_22 . exon 158922 159030 . - . ID=Physo114894.1;Parent=Physo114894;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 159281 160721 . + . ID=Physo132693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220041;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 159281 160721 . + . ID=Physo132693;Parent=Physo132693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 159281 159637 . + 0 ID=Physo132693;Parent=Physo132693;rank=1 scaffold_22 . exon 159281 159637 . + . ID=Physo132693.1;Parent=Physo132693;constitutive=1;rank=1 scaffold_22 . CDS 159725 159804 . + 0 ID=Physo132693;Parent=Physo132693;rank=2 scaffold_22 . exon 159725 159804 . + . ID=Physo132693.2;Parent=Physo132693;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 159874 160011 . + 0 ID=Physo132693;Parent=Physo132693;rank=3 scaffold_22 . exon 159874 160011 . + . ID=Physo132693.3;Parent=Physo132693;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . CDS 160095 160300 . + 0 ID=Physo132693;Parent=Physo132693;rank=4 scaffold_22 . exon 160095 160300 . + . ID=Physo132693.4;Parent=Physo132693;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 160378 160721 . + 0 ID=Physo132693;Parent=Physo132693;rank=5 scaffold_22 . exon 160378 160721 . + . ID=Physo132693.5;Parent=Physo132693;constitutive=1;ensembl_phase=1;rank=5 scaffold_22 ensembl protein_coding_gene 162549 163734 . - . ID=Physo132695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220043;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 162549 163734 . - . ID=Physo132695;Parent=Physo132695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 162549 163226 . - 0 ID=Physo132695;Parent=Physo132695;rank=3 scaffold_22 . exon 162549 163226 . - . ID=Physo132695.3;Parent=Physo132695;constitutive=1;rank=3 scaffold_22 . CDS 163315 163551 . - 0 ID=Physo132695;Parent=Physo132695;rank=2 scaffold_22 . exon 163315 163551 . - . ID=Physo132695.2;Parent=Physo132695;constitutive=1;rank=2 scaffold_22 . CDS 163624 163734 . - 0 ID=Physo132695;Parent=Physo132695;rank=1 scaffold_22 . exon 163624 163734 . - . ID=Physo132695.1;Parent=Physo132695;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 164089 167340 . + . ID=Physo132696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220044;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 164089 167340 . + . ID=Physo132696;Parent=Physo132696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 164089 167340 . + 0 ID=Physo132696;Parent=Physo132696;rank=1 scaffold_22 . exon 164089 167340 . + . ID=Physo132696.1;Parent=Physo132696;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 167487 168775 . - . ID=Physo156550;biotype=protein_coding;external_name=C_scaffold_22000005;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 167487 168775 . - . ID=Physo156550;Parent=Physo156550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 167487 168167 . - 0 ID=Physo156550;Parent=Physo156550;rank=3 scaffold_22 . exon 167487 168167 . - . ID=Physo156550.3;Parent=Physo156550;constitutive=1;rank=3 scaffold_22 . CDS 168263 168493 . - 0 ID=Physo156550;Parent=Physo156550;rank=2 scaffold_22 . exon 168263 168493 . - . ID=Physo156550.2;Parent=Physo156550;constitutive=1;rank=2 scaffold_22 . CDS 168587 168775 . - 0 ID=Physo156550;Parent=Physo156550;rank=1 scaffold_22 . exon 168587 168775 . - . ID=Physo156550.1;Parent=Physo156550;constitutive=1;rank=1 scaffold_22 . repeat_region 169322 169351 . ? . description=trf scaffold_22 . repeat_region 169673 169708 . ? . description=trf scaffold_22 . biological_region 169966 169968 0.999 - . logic_name=eponine scaffold_22 . biological_region 170250 170252 0.999 + . logic_name=eponine scaffold_22 . repeat_region 172004 172052 . ? . description=trf scaffold_22 . repeat_region 172023 172061 . ? . description=trf scaffold_22 . biological_region 175355 175356 0.999 + . logic_name=eponine scaffold_22 . repeat_region 175788 175877 . ? . description=trf scaffold_22 . repeat_region 175788 175877 . ? . description=trf scaffold_22 . biological_region 176114 176115 0.999 - . logic_name=eponine scaffold_22 . biological_region 176673 176677 0.999 - . logic_name=eponine scaffold_22 . biological_region 177490 177496 0.999 - . logic_name=eponine scaffold_22 . repeat_region 178467 178558 . ? . description=dust scaffold_22 . repeat_region 178469 178561 . ? . description=trf scaffold_22 . repeat_region 178475 178562 . ? . description=trf scaffold_22 ensembl protein_coding_gene 175181 176011 . - . ID=Physo132699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220047;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 175181 176011 . - . ID=Physo132699;Parent=Physo132699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 175181 175533 . - 0 ID=Physo132699;Parent=Physo132699;rank=2 scaffold_22 . exon 175181 175533 . - . ID=Physo132699.2;Parent=Physo132699;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 175753 176011 . - 0 ID=Physo132699;Parent=Physo132699;rank=1 scaffold_22 . exon 175753 176011 . - . ID=Physo132699.1;Parent=Physo132699;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 176541 177755 . + . ID=Physo132700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220048;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 176541 177755 . + . ID=Physo132700;Parent=Physo132700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 176541 177755 . + 0 ID=Physo132700;Parent=Physo132700;rank=1 scaffold_22 . exon 176541 177755 . + . ID=Physo132700.1;Parent=Physo132700;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 177979 178809 . + . ID=Physo132701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220049;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 177979 178809 . + . ID=Physo132701;Parent=Physo132701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 177979 178809 . + . ID=Physo132701.1;Parent=Physo132701;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 178088 178705 . + 0 ID=Physo132701;Parent=Physo132701;rank=1 scaffold_22 ensembl protein_coding_gene 169094 171034 . + . ID=Physo156551;biotype=protein_coding;external_name=C_scaffold_22000006;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 169094 171034 . + . ID=Physo156551;Parent=Physo156551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 169094 169674 . + 0 ID=Physo156551;Parent=Physo156551;rank=1 scaffold_22 . exon 169094 169674 . + . ID=Physo156551.1;Parent=Physo156551;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 169705 170321 . + 0 ID=Physo156551;Parent=Physo156551;rank=2 scaffold_22 . exon 169705 170321 . + . ID=Physo156551.2;Parent=Physo156551;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 170751 171034 . + 0 ID=Physo156551;Parent=Physo156551;rank=3 scaffold_22 . exon 170751 171034 . + . ID=Physo156551.3;Parent=Physo156551;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . repeat_region 187110 187178 . + . description=(CAG)n scaffold_22 ensembl protein_coding_gene 183806 185002 . - . ID=Physo108644;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_220005;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 183806 185002 . - . ID=Physo108644;Parent=Physo108644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 183806 185002 . - 0 ID=Physo108644;Parent=Physo108644;rank=1 scaffold_22 . exon 183806 185002 . - . ID=Physo108644.1;Parent=Physo108644;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 179071 182187 . + . ID=Physo132702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220050;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 179071 182187 . + . ID=Physo132702;Parent=Physo132702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 179071 179231 . + 0 ID=Physo132702;Parent=Physo132702;rank=1 scaffold_22 . exon 179071 179231 . + . ID=Physo132702.1;Parent=Physo132702;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 179273 179284 . + 0 ID=Physo132702;Parent=Physo132702;rank=2 scaffold_22 . exon 179273 179284 . + . ID=Physo132702.2;Parent=Physo132702;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 179314 179390 . + 0 ID=Physo132702;Parent=Physo132702;rank=3 scaffold_22 . exon 179314 179390 . + . ID=Physo132702.3;Parent=Physo132702;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 179462 182187 . + 0 ID=Physo132702;Parent=Physo132702;rank=4 scaffold_22 . exon 179462 182187 . + . ID=Physo132702.4;Parent=Physo132702;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 ensembl protein_coding_gene 182622 183519 . + . ID=Physo132703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220051;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 182622 183519 . + . ID=Physo132703;Parent=Physo132703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 182622 183081 . + 0 ID=Physo132703;Parent=Physo132703;rank=1 scaffold_22 . exon 182622 183081 . + . ID=Physo132703.1;Parent=Physo132703;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 183179 183519 . + 0 ID=Physo132703;Parent=Physo132703;rank=2 scaffold_22 . exon 183179 183519 . + . ID=Physo132703.2;Parent=Physo132703;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 ensembl protein_coding_gene 186959 188036 . + . ID=Physo132705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220053;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 186959 188036 . + . ID=Physo132705;Parent=Physo132705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 186959 187074 . + . ID=Physo132705.1;Parent=Physo132705;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 186985 187074 . + 0 ID=Physo132705;Parent=Physo132705;rank=1 scaffold_22 . CDS 187400 187543 . + 0 ID=Physo132705;Parent=Physo132705;rank=2 scaffold_22 . exon 187400 187543 . + . ID=Physo132705.2;Parent=Physo132705;constitutive=1;rank=2 scaffold_22 . CDS 187703 187792 . + 0 ID=Physo132705;Parent=Physo132705;rank=3 scaffold_22 . exon 187703 188036 . + . ID=Physo132705.3;Parent=Physo132705;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_22 . biological_region 188626 188630 0.999 + . logic_name=eponine scaffold_22 . biological_region 188716 188723 0.999 + . logic_name=eponine scaffold_22 . repeat_region 191539 191569 . ? . description=trf scaffold_22 . biological_region 192913 192918 0.999 - . logic_name=eponine scaffold_22 . biological_region 193307 193307 0.999 - . logic_name=eponine scaffold_22 . biological_region 193637 193639 0.999 + . logic_name=eponine scaffold_22 . biological_region 193758 193761 0.999 + . logic_name=eponine scaffold_22 . repeat_region 195600 195612 . ? . description=dust scaffold_22 ensembl protein_coding_gene 192280 193903 . - . ID=Physo132707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220055;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 192280 193903 . - . ID=Physo132707;Parent=Physo132707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 192280 193457 . - . ID=Physo132707.2;Parent=Physo132707;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_22 . CDS 192468 193457 . - 0 ID=Physo132707;Parent=Physo132707;rank=2 scaffold_22 . CDS 193551 193901 . - 0 ID=Physo132707;Parent=Physo132707;rank=1 scaffold_22 . exon 193551 193903 . - . ID=Physo132707.1;Parent=Physo132707;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 194285 195133 . + . ID=Physo132708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220056;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 194285 195133 . + . ID=Physo132708;Parent=Physo132708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 194285 194510 . + 0 ID=Physo132708;Parent=Physo132708;rank=1 scaffold_22 . exon 194285 194510 . + . ID=Physo132708.1;Parent=Physo132708;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 194820 195133 . + 0 ID=Physo132708;Parent=Physo132708;rank=2 scaffold_22 . exon 194820 195133 . + . ID=Physo132708.2;Parent=Physo132708;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 ensembl protein_coding_gene 197525 202105 . + . ID=Physo132709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220057;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 197525 202105 . + . ID=Physo132709;Parent=Physo132709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 197525 197530 . + 0 ID=Physo132709;Parent=Physo132709;rank=1 scaffold_22 . exon 197525 197530 . + . ID=Physo132709.1;Parent=Physo132709;constitutive=1;rank=1 scaffold_22 . CDS 197850 197915 . + 0 ID=Physo132709;Parent=Physo132709;rank=2 scaffold_22 . exon 197850 197915 . + . ID=Physo132709.2;Parent=Physo132709;constitutive=1;rank=2 scaffold_22 . CDS 197939 198478 . + 0 ID=Physo132709;Parent=Physo132709;rank=3 scaffold_22 . exon 197939 198478 . + . ID=Physo132709.3;Parent=Physo132709;constitutive=1;rank=3 scaffold_22 . CDS 198549 199480 . + 0 ID=Physo132709;Parent=Physo132709;rank=4 scaffold_22 . CDS 199541 199851 . + 0 ID=Physo132709;Parent=Physo132709;rank=5 scaffold_22 . CDS 200091 200716 . + 0 ID=Physo132709;Parent=Physo132709;rank=6 scaffold_22 . CDS 200792 201467 . + 0 ID=Physo132709;Parent=Physo132709;rank=7 scaffold_22 . CDS 201500 201806 . + 0 ID=Physo132709;Parent=Physo132709;rank=8 scaffold_22 . CDS 201958 202105 . + 0 ID=Physo132709;Parent=Physo132709;rank=9 scaffold_22 ensembl protein_coding_gene 188618 191900 . + . ID=Physo156553;biotype=protein_coding;external_name=C_scaffold_22000008;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 188618 191900 . + . ID=Physo156553;Parent=Physo156553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 188618 188787 . + 0 ID=Physo156553;Parent=Physo156553;rank=1 scaffold_22 . exon 188618 188787 . + . ID=Physo156553.1;Parent=Physo156553;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 189037 189401 . + 0 ID=Physo156553;Parent=Physo156553;rank=2 scaffold_22 . exon 189037 189401 . + . ID=Physo156553.2;Parent=Physo156553;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 189447 189685 . + 0 ID=Physo156553;Parent=Physo156553;rank=3 scaffold_22 . exon 189447 189685 . + . ID=Physo156553.3;Parent=Physo156553;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 189759 189817 . + 0 ID=Physo156553;Parent=Physo156553;rank=4 scaffold_22 . exon 189759 189817 . + . ID=Physo156553.4;Parent=Physo156553;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 189961 189998 . + 0 ID=Physo156553;Parent=Physo156553;rank=5 scaffold_22 . exon 189961 189998 . + . ID=Physo156553.5;Parent=Physo156553;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 190086 190207 . + 0 ID=Physo156553;Parent=Physo156553;rank=6 scaffold_22 . exon 190086 190207 . + . ID=Physo156553.6;Parent=Physo156553;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 190285 190455 . + 0 ID=Physo156553;Parent=Physo156553;rank=7 scaffold_22 . exon 190285 190455 . + . ID=Physo156553.7;Parent=Physo156553;constitutive=1;rank=7 scaffold_22 . CDS 190551 190639 . + 0 ID=Physo156553;Parent=Physo156553;rank=8 scaffold_22 . exon 190551 190639 . + . ID=Physo156553.8;Parent=Physo156553;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_22 . CDS 190712 191135 . + 0 ID=Physo156553;Parent=Physo156553;rank=9 scaffold_22 . exon 190712 191135 . + . ID=Physo156553.9;Parent=Physo156553;constitutive=1;ensembl_phase=2;rank=9 scaffold_22 . CDS 191341 191481 . + 0 ID=Physo156553;Parent=Physo156553;rank=10 scaffold_22 . exon 191341 191481 . + . ID=Physo156553.10;Parent=Physo156553;constitutive=1;rank=10 scaffold_22 . CDS 191597 191687 . + 0 ID=Physo156553;Parent=Physo156553;rank=11 scaffold_22 . exon 191597 191687 . + . ID=Physo156553.11;Parent=Physo156553;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_22 . CDS 191776 191900 . + 0 ID=Physo156553;Parent=Physo156553;rank=12 scaffold_22 . exon 191776 191900 . + . ID=Physo156553.12;Parent=Physo156553;constitutive=1;ensembl_phase=1;rank=12 scaffold_22 . exon 198549 199480 . + . ID=Physo132709.4;Parent=Physo132709;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . exon 199541 199851 . + . ID=Physo132709.5;Parent=Physo132709;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_22 . exon 200091 200716 . + . ID=Physo132709.6;Parent=Physo132709;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . exon 200792 201467 . + . ID=Physo132709.7;Parent=Physo132709;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_22 . exon 201500 201806 . + . ID=Physo132709.8;Parent=Physo132709;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_22 . exon 201958 202105 . + . ID=Physo132709.9;Parent=Physo132709;constitutive=1;ensembl_phase=2;rank=9 scaffold_22 ensembl protein_coding_gene 203340 203765 . - . ID=Physo132710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220058;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 203340 203765 . - . ID=Physo132710;Parent=Physo132710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 203340 203765 . - 0 ID=Physo132710;Parent=Physo132710;rank=1 scaffold_22 . exon 203340 203765 . - . ID=Physo132710.1;Parent=Physo132710;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 206659 208738 . + . ID=Physo132711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220059;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 206659 208738 . + . ID=Physo132711;Parent=Physo132711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 206659 206709 . + 0 ID=Physo132711;Parent=Physo132711;rank=1 scaffold_22 . exon 206659 206709 . + . ID=Physo132711.1;Parent=Physo132711;constitutive=1;rank=1 scaffold_22 . CDS 206751 207749 . + 0 ID=Physo132711;Parent=Physo132711;rank=2 scaffold_22 . exon 206751 207749 . + . ID=Physo132711.2;Parent=Physo132711;constitutive=1;rank=2 scaffold_22 . CDS 208071 208562 . + 0 ID=Physo132711;Parent=Physo132711;rank=3 scaffold_22 . exon 208071 208562 . + . ID=Physo132711.3;Parent=Physo132711;constitutive=1;rank=3 scaffold_22 . CDS 208592 208738 . + 0 ID=Physo132711;Parent=Physo132711;rank=4 scaffold_22 . repeat_region 209115 209164 . ? . description=dust scaffold_22 . repeat_region 209692 209704 . ? . description=dust scaffold_22 . biological_region 210497 210499 0.999 - . logic_name=eponine scaffold_22 . exon 208592 208738 . + . ID=Physo132711.4;Parent=Physo132711;constitutive=1;rank=4 scaffold_22 ensembl protein_coding_gene 209830 212929 . + . ID=Physo132712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220060;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 209830 212929 . + . ID=Physo132712;Parent=Physo132712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 209830 209880 . + 0 ID=Physo132712;Parent=Physo132712;rank=1 scaffold_22 . exon 209830 209880 . + . ID=Physo132712.1;Parent=Physo132712;constitutive=1;rank=1 scaffold_22 . CDS 209922 210920 . + 0 ID=Physo132712;Parent=Physo132712;rank=2 scaffold_22 . exon 209922 210920 . + . ID=Physo132712.2;Parent=Physo132712;constitutive=1;rank=2 scaffold_22 . CDS 211242 211733 . + 0 ID=Physo132712;Parent=Physo132712;rank=3 scaffold_22 . exon 211242 211733 . + . ID=Physo132712.3;Parent=Physo132712;constitutive=1;rank=3 scaffold_22 . CDS 211763 211855 . + 0 ID=Physo132712;Parent=Physo132712;rank=4 scaffold_22 . exon 211763 211855 . + . ID=Physo132712.4;Parent=Physo132712;constitutive=1;rank=4 scaffold_22 . CDS 211910 212929 . + 0 ID=Physo132712;Parent=Physo132712;rank=5 scaffold_22 . exon 211910 212929 . + . ID=Physo132712.5;Parent=Physo132712;constitutive=1;rank=5 scaffold_22 ensembl protein_coding_gene 214563 218735 . + . ID=Physo132713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220061;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 214563 218735 . + . ID=Physo132713;Parent=Physo132713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 214563 214627 . + 0 ID=Physo132713;Parent=Physo132713;rank=1 scaffold_22 . exon 214563 214627 . + . ID=Physo132713.1;Parent=Physo132713;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 214712 216148 . + 0 ID=Physo132713;Parent=Physo132713;rank=2 scaffold_22 . exon 214712 216148 . + . ID=Physo132713.2;Parent=Physo132713;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 216339 216973 . + 0 ID=Physo132713;Parent=Physo132713;rank=3 scaffold_22 . exon 216339 216973 . + . ID=Physo132713.3;Parent=Physo132713;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 217030 217718 . + 0 ID=Physo132713;Parent=Physo132713;rank=4 scaffold_22 . exon 217030 217718 . + . ID=Physo132713.4;Parent=Physo132713;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 217755 218735 . + 0 ID=Physo132713;Parent=Physo132713;rank=5 scaffold_22 . exon 217755 218735 . + . ID=Physo132713.5;Parent=Physo132713;constitutive=1;rank=5 scaffold_22 . repeat_region 220509 220557 . ? . description=trf scaffold_22 . repeat_region 224189 224237 . ? . description=trf scaffold_22 . repeat_region 224344 224385 . ? . description=trf scaffold_22 ensembl protein_coding_gene 221093 222604 . + . ID=Physo132714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220062;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 221093 222604 . + . ID=Physo132714;Parent=Physo132714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 221093 221587 . + 0 ID=Physo132714;Parent=Physo132714;rank=1 scaffold_22 . exon 221093 221587 . + . ID=Physo132714.1;Parent=Physo132714;constitutive=1;rank=1 scaffold_22 . CDS 221624 222604 . + 0 ID=Physo132714;Parent=Physo132714;rank=2 scaffold_22 . exon 221624 222604 . + . ID=Physo132714.2;Parent=Physo132714;constitutive=1;rank=2 scaffold_22 . biological_region 229487 229491 0.999 - . logic_name=eponine scaffold_22 . repeat_region 237663 237672 . ? . description=dust scaffold_22 ensembl protein_coding_gene 228872 229537 . + . ID=Physo132715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220063;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 228872 229537 . + . ID=Physo132715;Parent=Physo132715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 228872 228918 . + 0 ID=Physo132715;Parent=Physo132715;rank=1 scaffold_22 . exon 228872 228918 . + . ID=Physo132715.1;Parent=Physo132715;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 229081 229537 . + 0 ID=Physo132715;Parent=Physo132715;rank=2 scaffold_22 . exon 229081 229537 . + . ID=Physo132715.2;Parent=Physo132715;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . repeat_region 246281 246464 . ? . description=trf scaffold_22 . repeat_region 246781 246916 . ? . description=trf scaffold_22 ensembl protein_coding_gene 241986 242309 . - . ID=Physo132716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220064;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 241986 242309 . - . ID=Physo132716;Parent=Physo132716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 241986 242309 . - 0 ID=Physo132716;Parent=Physo132716;rank=1 scaffold_22 . exon 241986 242309 . - . ID=Physo132716.1;Parent=Physo132716;constitutive=1;rank=1 scaffold_22 . repeat_region 250392 250716 . + . description=Polinton-1_PI scaffold_22 . repeat_region 253938 254139 . + . description=Polinton-1_PI scaffold_22 . repeat_region 255308 255315 . ? . description=dust scaffold_22 . repeat_region 255951 258099 . + . description=Polinton-1_PI scaffold_22 ensembl protein_coding_gene 250144 250734 . + . ID=Physo132717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220065;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 250144 250734 . + . ID=Physo132717;Parent=Physo132717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 250144 250734 . + 0 ID=Physo132717;Parent=Physo132717;rank=1 scaffold_22 . exon 250144 250734 . + . ID=Physo132717.1;Parent=Physo132717;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 255318 255734 . - . ID=Physo132718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220066;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 255318 255734 . - . ID=Physo132718;Parent=Physo132718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 255318 255734 . - 0 ID=Physo132718;Parent=Physo132718;rank=1 scaffold_22 . exon 255318 255734 . - . ID=Physo132718.1;Parent=Physo132718;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 257290 258114 . + . ID=Physo132719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220067;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 257290 258114 . + . ID=Physo132719;Parent=Physo132719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 257290 258114 . + 0 ID=Physo132719;Parent=Physo132719;rank=1 scaffold_22 . exon 257290 258114 . + . ID=Physo132719.1;Parent=Physo132719;constitutive=1;rank=1 scaffold_22 . repeat_region 259756 259800 . ? . description=trf scaffold_22 . biological_region 260113 260115 0.999 - . logic_name=eponine scaffold_22 . biological_region 260168 260172 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 259185 259508 . + . ID=Physo132720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220068;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 259185 259508 . + . ID=Physo132720;Parent=Physo132720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 259185 259508 . + 0 ID=Physo132720;Parent=Physo132720;rank=1 scaffold_22 . exon 259185 259508 . + . ID=Physo132720.1;Parent=Physo132720;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 260305 264417 . - . ID=Physo132721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220069;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 260305 264417 . - . ID=Physo132721;Parent=Physo132721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 260305 260383 . - 0 ID=Physo132721;Parent=Physo132721;rank=10 scaffold_22 . exon 260305 260383 . - . ID=Physo132721.10;Parent=Physo132721;constitutive=1;ensembl_phase=2;rank=10 scaffold_22 . CDS 260439 260560 . - 0 ID=Physo132721;Parent=Physo132721;rank=9 scaffold_22 . exon 260439 260560 . - . ID=Physo132721.9;Parent=Physo132721;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_22 . CDS 260608 260647 . - 0 ID=Physo132721;Parent=Physo132721;rank=8 scaffold_22 . exon 260608 260647 . - . ID=Physo132721.8;Parent=Physo132721;constitutive=1;ensembl_phase=2;rank=8 scaffold_22 . CDS 261030 261298 . - 0 ID=Physo132721;Parent=Physo132721;rank=7 scaffold_22 . exon 261030 261298 . - . ID=Physo132721.7;Parent=Physo132721;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_22 . CDS 261538 261802 . - 0 ID=Physo132721;Parent=Physo132721;rank=6 scaffold_22 . exon 261538 261802 . - . ID=Physo132721.6;Parent=Physo132721;constitutive=1;ensembl_phase=2;rank=6 scaffold_22 . CDS 261881 261927 . - 0 ID=Physo132721;Parent=Physo132721;rank=5 scaffold_22 . exon 261881 261927 . - . ID=Physo132721.5;Parent=Physo132721;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_22 . CDS 262070 262241 . - 0 ID=Physo132721;Parent=Physo132721;rank=4 scaffold_22 . exon 262070 262241 . - . ID=Physo132721.4;Parent=Physo132721;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 262270 263289 . - 0 ID=Physo132721;Parent=Physo132721;rank=3 scaffold_22 . exon 262270 263289 . - . ID=Physo132721.3;Parent=Physo132721;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . CDS 263508 263896 . - 0 ID=Physo132721;Parent=Physo132721;rank=2 scaffold_22 . exon 263508 263896 . - . ID=Physo132721.2;Parent=Physo132721;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 263917 264417 . - 0 ID=Physo132721;Parent=Physo132721;rank=1 scaffold_22 . exon 263917 264417 . - . ID=Physo132721.1;Parent=Physo132721;constitutive=1;rank=1 scaffold_22 . repeat_region 270720 270729 . ? . description=dust scaffold_22 . repeat_region 276004 276045 . ? . description=dust scaffold_22 . repeat_region 279332 279412 . + . description=(TAAG)n scaffold_22 . repeat_region 279370 279412 . ? . description=trf scaffold_22 . repeat_region 282667 282863 . - . description=LSU-rRNA_Hca scaffold_22 . biological_region 283440 283441 0.999 + . logic_name=eponine scaffold_22 . repeat_region 286171 286367 . - . description=LSU-rRNA_Hca scaffold_22 ensembl gene 281284 281585 . + . ID=EPrPSOG00000000076;biotype=SRP_RNA;description=Eukaryotic type signal recognition particle RNA [Source:RFAM%3BAcc:RF00017];external_name=SRP_euk_arch;logic_name=ncrna_eg scaffold_22 ensembl transcript 281284 281585 . + . ID=EPrPSOT00000000076;Parent=EPrPSOG00000000076;biotype=SRP_RNA;logic_name=ncrna_eg scaffold_22 ensembl gene 284780 285081 . + . ID=EPrPSOG00000000130;biotype=SRP_RNA;description=Eukaryotic type signal recognition particle RNA [Source:RFAM%3BAcc:RF00017];external_name=SRP_euk_arch;logic_name=ncrna_eg scaffold_22 ensembl transcript 284780 285081 . + . ID=EPrPSOT00000000130;Parent=EPrPSOG00000000130;biotype=SRP_RNA;logic_name=ncrna_eg scaffold_22 . exon 281284 281585 . + . ID=EPrPSOE00000000076;Parent=EPrPSOT00000000076;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . exon 284780 285081 . + . ID=EPrPSOE00000000130;Parent=EPrPSOT00000000130;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . repeat_region 295129 295139 . ? . description=dust scaffold_22 . repeat_region 295773 295781 . ? . description=dust scaffold_22 ensembl protein_coding_gene 289198 292173 . + . ID=Physo132722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220070;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 289198 292173 . + . ID=Physo132722;Parent=Physo132722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 289198 289573 . + 0 ID=Physo132722;Parent=Physo132722;rank=1 scaffold_22 . exon 289198 289573 . + . ID=Physo132722.1;Parent=Physo132722;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 289599 289852 . + 0 ID=Physo132722;Parent=Physo132722;rank=2 scaffold_22 . exon 289599 289852 . + . ID=Physo132722.2;Parent=Physo132722;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 289939 290094 . + 0 ID=Physo132722;Parent=Physo132722;rank=3 scaffold_22 . exon 289939 290094 . + . ID=Physo132722.3;Parent=Physo132722;constitutive=1;rank=3 scaffold_22 . CDS 290186 290273 . + 0 ID=Physo132722;Parent=Physo132722;rank=4 scaffold_22 . exon 290186 290273 . + . ID=Physo132722.4;Parent=Physo132722;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_22 . CDS 291117 291395 . + 0 ID=Physo132722;Parent=Physo132722;rank=5 scaffold_22 . exon 291117 291395 . + . ID=Physo132722.5;Parent=Physo132722;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 291460 291779 . + 0 ID=Physo132722;Parent=Physo132722;rank=6 scaffold_22 . exon 291460 291779 . + . ID=Physo132722.6;Parent=Physo132722;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 292159 292173 . + 0 ID=Physo132722;Parent=Physo132722;rank=7 scaffold_22 . exon 292159 292173 . + . ID=Physo132722.7;Parent=Physo132722;constitutive=1;rank=7 scaffold_22 ensembl protein_coding_gene 297795 299999 . + . ID=Physo132723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220071;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 297795 299999 . + . ID=Physo132723;Parent=Physo132723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 297795 299999 . + 0 ID=Physo132723;Parent=Physo132723;rank=1 scaffold_22 . exon 297795 299999 . + . ID=Physo132723.1;Parent=Physo132723;constitutive=1;rank=1 scaffold_22 . repeat_region 302749 302776 . ? . description=trf scaffold_22 . repeat_region 306415 306441 . ? . description=trf scaffold_22 . biological_region 307537 307538 0.999 + . logic_name=eponine scaffold_22 . biological_region 307592 307594 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 301832 302537 . + . ID=Physo132724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220072;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 301832 302537 . + . ID=Physo132724;Parent=Physo132724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 301832 302087 . + 0 ID=Physo132724;Parent=Physo132724;rank=1 scaffold_22 . exon 301832 302087 . + . ID=Physo132724.1;Parent=Physo132724;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 302173 302370 . + 0 ID=Physo132724;Parent=Physo132724;rank=2 scaffold_22 . exon 302173 302370 . + . ID=Physo132724.2;Parent=Physo132724;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 302413 302537 . + 0 ID=Physo132724;Parent=Physo132724;rank=3 scaffold_22 . exon 302413 302537 . + . ID=Physo132724.3;Parent=Physo132724;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 ensembl protein_coding_gene 306623 307730 . + . ID=Physo132725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220073;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 306623 307730 . + . ID=Physo132725;Parent=Physo132725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 306623 307240 . + 0 ID=Physo132725;Parent=Physo132725;rank=1 scaffold_22 . exon 306623 307240 . + . ID=Physo132725.1;Parent=Physo132725;constitutive=1;rank=1 scaffold_22 . CDS 307359 307730 . + 0 ID=Physo132725;Parent=Physo132725;rank=2 scaffold_22 . exon 307359 307730 . + . ID=Physo132725.2;Parent=Physo132725;constitutive=1;rank=2 scaffold_22 . repeat_region 307892 307899 . ? . description=dust scaffold_22 . repeat_region 310818 310833 . ? . description=dust scaffold_22 . repeat_region 311844 311856 . ? . description=dust scaffold_22 . repeat_region 313431 313468 . ? . description=dust scaffold_22 ensembl protein_coding_gene 312162 312969 . - . ID=Physo132726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220074;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 312162 312969 . - . ID=Physo132726;Parent=Physo132726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 312162 312374 . - 0 ID=Physo132726;Parent=Physo132726;rank=3 scaffold_22 . exon 312162 312374 . - . ID=Physo132726.3;Parent=Physo132726;constitutive=1;rank=3 scaffold_22 . CDS 312634 312790 . - 0 ID=Physo132726;Parent=Physo132726;rank=2 scaffold_22 . exon 312634 312790 . - . ID=Physo132726.2;Parent=Physo132726;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 312860 312969 . - 0 ID=Physo132726;Parent=Physo132726;rank=1 scaffold_22 . exon 312860 312969 . - . ID=Physo132726.1;Parent=Physo132726;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 313121 315251 . + . ID=Physo132727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220075;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 313121 315251 . + . ID=Physo132727;Parent=Physo132727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 313121 313142 . + 0 ID=Physo132727;Parent=Physo132727;rank=1 scaffold_22 . exon 313121 313142 . + . ID=Physo132727.1;Parent=Physo132727;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 313223 313333 . + 0 ID=Physo132727;Parent=Physo132727;rank=2 scaffold_22 . exon 313223 313333 . + . ID=Physo132727.2;Parent=Physo132727;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 313410 313976 . + 0 ID=Physo132727;Parent=Physo132727;rank=3 scaffold_22 . exon 313410 313976 . + . ID=Physo132727.3;Parent=Physo132727;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 314072 314545 . + 0 ID=Physo132727;Parent=Physo132727;rank=4 scaffold_22 . exon 314072 314545 . + . ID=Physo132727.4;Parent=Physo132727;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 314656 315251 . + 0 ID=Physo132727;Parent=Physo132727;rank=5 scaffold_22 . exon 314656 315251 . + . ID=Physo132727.5;Parent=Physo132727;constitutive=1;ensembl_phase=1;rank=5 scaffold_22 ensembl protein_coding_gene 315451 318046 . - . ID=Physo132728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220076;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 315451 318046 . - . ID=Physo132728;Parent=Physo132728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 315451 317639 . - 0 ID=Physo132728;Parent=Physo132728;rank=3 scaffold_22 . exon 315451 317639 . - . ID=Physo132728.3;Parent=Physo132728;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 317703 317944 . - 0 ID=Physo132728;Parent=Physo132728;rank=2 scaffold_22 . CDS 318021 318046 . - 0 ID=Physo132728;Parent=Physo132728;rank=1 scaffold_22 . biological_region 319636 319644 0.999 + . logic_name=eponine scaffold_22 . biological_region 319677 319680 0.999 + . logic_name=eponine scaffold_22 . biological_region 319708 319716 0.999 + . logic_name=eponine scaffold_22 . biological_region 319744 319745 0.999 + . logic_name=eponine scaffold_22 . biological_region 319749 319752 0.999 - . logic_name=eponine scaffold_22 . repeat_region 322525 322555 . ? . description=trf scaffold_22 . biological_region 323669 323670 0.999 - . logic_name=eponine scaffold_22 . biological_region 327167 327170 0.999 + . logic_name=eponine scaffold_22 . biological_region 327272 327275 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 318823 319674 . - . ID=Physo114742;biotype=protein_coding;external_name=estExt_Genewise1.C_220010;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 318823 319674 . - . ID=Physo114742;Parent=Physo114742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 318823 319089 . - 0 ID=Physo114742;Parent=Physo114742;rank=4 scaffold_22 . exon 318823 319089 . - . ID=Physo114742.4;Parent=Physo114742;constitutive=1;rank=4 scaffold_22 . CDS 319166 319264 . - 0 ID=Physo114742;Parent=Physo114742;rank=3 scaffold_22 . exon 319166 319264 . - . ID=Physo114742.3;Parent=Physo114742;constitutive=1;rank=3 scaffold_22 . CDS 319345 319479 . - 0 ID=Physo114742;Parent=Physo114742;rank=2 scaffold_22 . exon 319345 319479 . - . ID=Physo114742.2;Parent=Physo114742;constitutive=1;rank=2 scaffold_22 . CDS 319567 319656 . - 0 ID=Physo114742;Parent=Physo114742;rank=1 scaffold_22 . exon 319567 319674 . - . ID=Physo114742.1;Parent=Physo114742;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . exon 317703 317944 . - . ID=Physo132728.2;Parent=Physo132728;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . exon 318021 318046 . - . ID=Physo132728.1;Parent=Physo132728;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 319941 322640 . - . ID=Physo132730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220078;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 319941 322640 . - . ID=Physo132730;Parent=Physo132730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 319941 320052 . - 0 ID=Physo132730;Parent=Physo132730;rank=8 scaffold_22 . exon 319941 320052 . - . ID=Physo132730.8;Parent=Physo132730;constitutive=1;ensembl_phase=2;rank=8 scaffold_22 . CDS 320119 320190 . - 0 ID=Physo132730;Parent=Physo132730;rank=7 scaffold_22 . exon 320119 320190 . - . ID=Physo132730.7;Parent=Physo132730;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_22 . CDS 320266 320612 . - 0 ID=Physo132730;Parent=Physo132730;rank=6 scaffold_22 . exon 320266 320612 . - . ID=Physo132730.6;Parent=Physo132730;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_22 . CDS 320690 320720 . - 0 ID=Physo132730;Parent=Physo132730;rank=5 scaffold_22 . exon 320690 320720 . - . ID=Physo132730.5;Parent=Physo132730;constitutive=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 320789 320853 . - 0 ID=Physo132730;Parent=Physo132730;rank=4 scaffold_22 . exon 320789 320853 . - . ID=Physo132730.4;Parent=Physo132730;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 321067 321242 . - 0 ID=Physo132730;Parent=Physo132730;rank=3 scaffold_22 . exon 321067 321242 . - . ID=Physo132730.3;Parent=Physo132730;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 321990 322234 . - 0 ID=Physo132730;Parent=Physo132730;rank=2 scaffold_22 . exon 321990 322234 . - . ID=Physo132730.2;Parent=Physo132730;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 322327 322640 . - 0 ID=Physo132730;Parent=Physo132730;rank=1 scaffold_22 . exon 322327 322640 . - . ID=Physo132730.1;Parent=Physo132730;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 323058 325878 . + . ID=Physo132731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220079;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 323058 325878 . + . ID=Physo132731;Parent=Physo132731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 323058 323194 . + 0 ID=Physo132731;Parent=Physo132731;rank=1 scaffold_22 . exon 323058 323194 . + . ID=Physo132731.1;Parent=Physo132731;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 323298 325137 . + 0 ID=Physo132731;Parent=Physo132731;rank=2 scaffold_22 . exon 323298 325137 . + . ID=Physo132731.2;Parent=Physo132731;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 325222 325515 . + 0 ID=Physo132731;Parent=Physo132731;rank=3 scaffold_22 . exon 325222 325515 . + . ID=Physo132731.3;Parent=Physo132731;constitutive=1;rank=3 scaffold_22 . CDS 325588 325713 . + 0 ID=Physo132731;Parent=Physo132731;rank=4 scaffold_22 . exon 325588 325878 . + . ID=Physo132731.4;Parent=Physo132731;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_22 ensembl protein_coding_gene 325964 328097 . - . ID=Physo156556;biotype=protein_coding;external_name=C_scaffold_22000011;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 325964 328097 . - . ID=Physo156556;Parent=Physo156556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 325964 326097 . - 0 ID=Physo156556;Parent=Physo156556;rank=8 scaffold_22 . exon 325964 326097 . - . ID=Physo156556.8;Parent=Physo156556;constitutive=1;ensembl_phase=1;rank=8 scaffold_22 . CDS 326171 326293 . - 0 ID=Physo156556;Parent=Physo156556;rank=7 scaffold_22 . exon 326171 326293 . - . ID=Physo156556.7;Parent=Physo156556;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_22 . CDS 326364 326486 . - 0 ID=Physo156556;Parent=Physo156556;rank=6 scaffold_22 . exon 326364 326486 . - . ID=Physo156556.6;Parent=Physo156556;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 326587 326709 . - 0 ID=Physo156556;Parent=Physo156556;rank=5 scaffold_22 . exon 326587 326709 . - . ID=Physo156556.5;Parent=Physo156556;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 326786 326908 . - 0 ID=Physo156556;Parent=Physo156556;rank=4 scaffold_22 . exon 326786 326908 . - . ID=Physo156556.4;Parent=Physo156556;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 326998 327117 . - 0 ID=Physo156556;Parent=Physo156556;rank=3 scaffold_22 . exon 326998 327117 . - . ID=Physo156556.3;Parent=Physo156556;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 327213 327289 . - 0 ID=Physo156556;Parent=Physo156556;rank=2 scaffold_22 . exon 327213 327289 . - . ID=Physo156556.2;Parent=Physo156556;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 327511 328097 . - 0 ID=Physo156556;Parent=Physo156556;rank=1 scaffold_22 . exon 327511 328097 . - . ID=Physo156556.1;Parent=Physo156556;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . repeat_region 328140 328148 . ? . description=dust scaffold_22 ensembl protein_coding_gene 332552 333307 . + . ID=Physo132734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220082;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 332552 333307 . + . ID=Physo132734;Parent=Physo132734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 332552 333307 . + 0 ID=Physo132734;Parent=Physo132734;rank=1 scaffold_22 . exon 332552 333307 . + . ID=Physo132734.1;Parent=Physo132734;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 328498 329736 . + . ID=Physo156558;biotype=protein_coding;external_name=C_scaffold_22000013;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 328498 329736 . + . ID=Physo156558;Parent=Physo156558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 328498 329736 . + 0 ID=Physo156558;Parent=Physo156558;rank=1 scaffold_22 . exon 328498 329736 . + . ID=Physo156558.1;Parent=Physo156558;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 333535 334095 . - . ID=Physo156560;biotype=protein_coding;external_name=C_scaffold_22000015;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 333535 334095 . - . ID=Physo156560;Parent=Physo156560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 333535 333648 . - 0 ID=Physo156560;Parent=Physo156560;rank=2 scaffold_22 . exon 333535 333648 . - . ID=Physo156560.2;Parent=Physo156560;constitutive=1;rank=2 scaffold_22 . CDS 333769 334095 . - 0 ID=Physo156560;Parent=Physo156560;rank=1 scaffold_22 . exon 333769 334095 . - . ID=Physo156560.1;Parent=Physo156560;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 334290 334623 . + . ID=Physo156562;biotype=protein_coding;external_name=C_scaffold_22000017;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 334290 334623 . + . ID=Physo156562;Parent=Physo156562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 334290 334384 . + 0 ID=Physo156562;Parent=Physo156562;rank=1 scaffold_22 . exon 334290 334384 . + . ID=Physo156562.1;Parent=Physo156562;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 334452 334623 . + 0 ID=Physo156562;Parent=Physo156562;rank=2 scaffold_22 . exon 334452 334623 . + . ID=Physo156562.2;Parent=Physo156562;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 334875 335522 . - . ID=Physo156564;biotype=protein_coding;external_name=C_scaffold_22000019;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 334875 335522 . - . ID=Physo156564;Parent=Physo156564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 334875 335522 . - 0 ID=Physo156564;Parent=Physo156564;rank=1 scaffold_22 . exon 334875 335522 . - . ID=Physo156564.1;Parent=Physo156564;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 335899 336692 . - . ID=Physo156566;biotype=protein_coding;external_name=C_scaffold_22000021;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 335899 336692 . - . ID=Physo156566;Parent=Physo156566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 335899 336557 . - 0 ID=Physo156566;Parent=Physo156566;rank=2 scaffold_22 . exon 335899 336557 . - . ID=Physo156566.2;Parent=Physo156566;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 336635 336692 . - 0 ID=Physo156566;Parent=Physo156566;rank=1 scaffold_22 . exon 336635 336692 . - . ID=Physo156566.1;Parent=Physo156566;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . biological_region 337746 337749 0.999 - . logic_name=eponine scaffold_22 . biological_region 337761 337769 0.999 - . logic_name=eponine scaffold_22 . biological_region 340107 340109 0.999 + . logic_name=eponine scaffold_22 . biological_region 340252 340252 0.999 - . logic_name=eponine scaffold_22 . biological_region 340487 340487 0.999 + . logic_name=eponine scaffold_22 . biological_region 340952 340954 0.999 - . logic_name=eponine scaffold_22 . biological_region 341008 341009 0.999 + . logic_name=eponine scaffold_22 . biological_region 341426 341429 0.999 + . logic_name=eponine scaffold_22 . biological_region 341447 341448 0.999 + . logic_name=eponine scaffold_22 . biological_region 341547 341549 0.999 + . logic_name=eponine scaffold_22 . biological_region 341618 341623 0.999 - . logic_name=eponine scaffold_22 . biological_region 341678 341679 0.999 + . logic_name=eponine scaffold_22 . biological_region 344468 344468 0.999 - . logic_name=eponine scaffold_22 . biological_region 344473 344476 0.999 - . logic_name=eponine scaffold_22 . biological_region 344607 344609 0.999 - . logic_name=eponine scaffold_22 . repeat_region 345290 345309 . ? . description=trf scaffold_22 . biological_region 347352 347357 0.999 - . logic_name=eponine scaffold_22 . biological_region 347437 347440 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 341648 343768 . + . ID=Physo108646;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_220007;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 341648 343768 . + . ID=Physo108646;Parent=Physo108646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 341648 343768 . + 0 ID=Physo108646;Parent=Physo108646;rank=1 scaffold_22 . exon 341648 343768 . + . ID=Physo108646.1;Parent=Physo108646;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 339465 341148 . - . ID=Physo132739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220087;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 339465 341148 . - . ID=Physo132739;Parent=Physo132739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 339465 340405 . - 0 ID=Physo132739;Parent=Physo132739;rank=3 scaffold_22 . exon 339465 340405 . - . ID=Physo132739.3;Parent=Physo132739;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 340485 340630 . - 0 ID=Physo132739;Parent=Physo132739;rank=2 scaffold_22 . exon 340485 340630 . - . ID=Physo132739.2;Parent=Physo132739;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 340823 341148 . - 0 ID=Physo132739;Parent=Physo132739;rank=1 scaffold_22 . exon 340823 341148 . - . ID=Physo132739.1;Parent=Physo132739;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 344027 344764 . + . ID=Physo132741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220089;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 344027 344764 . + . ID=Physo132741;Parent=Physo132741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 344027 344067 . + 0 ID=Physo132741;Parent=Physo132741;rank=1 scaffold_22 . exon 344027 344067 . + . ID=Physo132741.1;Parent=Physo132741;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 344144 344187 . + 0 ID=Physo132741;Parent=Physo132741;rank=2 scaffold_22 . exon 344144 344187 . + . ID=Physo132741.2;Parent=Physo132741;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 344262 344764 . + 0 ID=Physo132741;Parent=Physo132741;rank=3 scaffold_22 . exon 344262 344764 . + . ID=Physo132741.3;Parent=Physo132741;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 ensembl protein_coding_gene 344815 347504 . - . ID=Physo132742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220090;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 344815 347504 . - . ID=Physo132742;Parent=Physo132742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 344815 345669 . - 0 ID=Physo132742;Parent=Physo132742;rank=4 scaffold_22 . exon 344815 345669 . - . ID=Physo132742.4;Parent=Physo132742;constitutive=1;rank=4 scaffold_22 . CDS 345825 345901 . - 0 ID=Physo132742;Parent=Physo132742;rank=3 scaffold_22 . exon 345825 345901 . - . ID=Physo132742.3;Parent=Physo132742;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 345984 346044 . - 0 ID=Physo132742;Parent=Physo132742;rank=2 scaffold_22 . exon 345984 346044 . - . ID=Physo132742.2;Parent=Physo132742;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 346119 347504 . - 0 ID=Physo132742;Parent=Physo132742;rank=1 scaffold_22 . exon 346119 347504 . - . ID=Physo132742.1;Parent=Physo132742;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 337867 338475 . + . ID=Physo156567;biotype=protein_coding;external_name=C_scaffold_22000022;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 337867 338475 . + . ID=Physo156567;Parent=Physo156567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 337867 338115 . + 0 ID=Physo156567;Parent=Physo156567;rank=1 scaffold_22 . exon 337867 338115 . + . ID=Physo156567.1;Parent=Physo156567;constitutive=1;rank=1 scaffold_22 . CDS 338211 338475 . + 0 ID=Physo156567;Parent=Physo156567;rank=2 scaffold_22 . exon 338211 338475 . + . ID=Physo156567.2;Parent=Physo156567;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 ensembl protein_coding_gene 348609 349958 . + . ID=Physo132743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220091;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 348609 349958 . + . ID=Physo132743;Parent=Physo132743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 348609 349958 . + 0 ID=Physo132743;Parent=Physo132743;rank=1 scaffold_22 . exon 348609 349958 . + . ID=Physo132743.1;Parent=Physo132743;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 350048 350876 . + . ID=Physo132744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220092;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 350048 350876 . + . ID=Physo132744;Parent=Physo132744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 350048 350407 . + 0 ID=Physo132744;Parent=Physo132744;rank=1 scaffold_22 . exon 350048 350407 . + . ID=Physo132744.1;Parent=Physo132744;constitutive=1;rank=1 scaffold_22 . CDS 350478 350876 . + 0 ID=Physo132744;Parent=Physo132744;rank=2 scaffold_22 . exon 350478 350876 . + . ID=Physo132744.2;Parent=Physo132744;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 355134 355817 . + . ID=Physo132747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220095;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 355134 355817 . + . ID=Physo132747;Parent=Physo132747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 355134 355248 . + 0 ID=Physo132747;Parent=Physo132747;rank=1 scaffold_22 . exon 355134 355248 . + . ID=Physo132747.1;Parent=Physo132747;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 355308 355816 . + 0 ID=Physo132747;Parent=Physo132747;rank=2 scaffold_22 . exon 355308 355817 . + . ID=Physo132747.2;Parent=Physo132747;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_22 ensembl protein_coding_gene 350971 351846 . - . ID=Physo156569;biotype=protein_coding;external_name=C_scaffold_22000024;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 350971 351846 . - . ID=Physo156569;Parent=Physo156569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 350971 351171 . - 0 ID=Physo156569;Parent=Physo156569;rank=2 scaffold_22 . exon 350971 351171 . - . ID=Physo156569.2;Parent=Physo156569;constitutive=1;rank=2 scaffold_22 . CDS 351493 351846 . - 0 ID=Physo156569;Parent=Physo156569;rank=1 scaffold_22 . exon 351493 351846 . - . ID=Physo156569.1;Parent=Physo156569;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 352249 353312 . + . ID=Physo156570;biotype=protein_coding;external_name=C_scaffold_22000025;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 352249 353312 . + . ID=Physo156570;Parent=Physo156570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 352249 352339 . + 0 ID=Physo156570;Parent=Physo156570;rank=1 scaffold_22 . exon 352249 352339 . + . ID=Physo156570.1;Parent=Physo156570;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 352408 353312 . + 0 ID=Physo156570;Parent=Physo156570;rank=2 scaffold_22 . exon 352408 353312 . + . ID=Physo156570.2;Parent=Physo156570;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . biological_region 357415 357419 0.999 + . logic_name=eponine scaffold_22 . biological_region 357684 357684 0.999 - . logic_name=eponine scaffold_22 . biological_region 357703 357711 0.999 - . logic_name=eponine scaffold_22 . biological_region 357761 357764 0.999 + . logic_name=eponine scaffold_22 . repeat_region 358083 358103 . ? . description=trf scaffold_22 . repeat_region 358413 358422 . ? . description=dust scaffold_22 . biological_region 359127 359132 0.999 + . logic_name=eponine scaffold_22 . biological_region 360032 360036 0.999 - . logic_name=eponine scaffold_22 . biological_region 360164 360164 0.999 - . logic_name=eponine scaffold_22 . biological_region 360176 360177 0.999 - . logic_name=eponine scaffold_22 . biological_region 360217 360219 0.999 + . logic_name=eponine scaffold_22 . biological_region 360844 360846 0.999 - . logic_name=eponine scaffold_22 . biological_region 365551 365552 0.999 + . logic_name=eponine scaffold_22 . biological_region 365612 365616 0.999 - . logic_name=eponine scaffold_22 . biological_region 366071 366071 0.999 + . logic_name=eponine scaffold_22 . biological_region 366124 366127 0.999 + . logic_name=eponine scaffold_22 . biological_region 366147 366150 0.999 - . logic_name=eponine scaffold_22 . biological_region 366154 366157 0.999 + . logic_name=eponine scaffold_22 . repeat_region 367222 367337 . + . description=Gypsy-1-LTR_PI scaffold_22 ensembl protein_coding_gene 357510 358229 . + . ID=Physo132748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220096;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 357510 358229 . + . ID=Physo132748;Parent=Physo132748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 357510 358229 . + . ID=Physo132748.1;Parent=Physo132748;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 357591 358229 . + 0 ID=Physo132748;Parent=Physo132748;rank=1 scaffold_22 ensembl protein_coding_gene 359805 360457 . - . ID=Physo132749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220097;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 359805 360457 . - . ID=Physo132749;Parent=Physo132749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 359805 360314 . - 0 ID=Physo132749;Parent=Physo132749;rank=2 scaffold_22 . exon 359805 360314 . - . ID=Physo132749.2;Parent=Physo132749;constitutive=1;rank=2 scaffold_22 . CDS 360374 360457 . - 0 ID=Physo132749;Parent=Physo132749;rank=1 scaffold_22 . exon 360374 360457 . - . ID=Physo132749.1;Parent=Physo132749;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 362189 363438 . + . ID=Physo132750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220098;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 362189 363438 . + . ID=Physo132750;Parent=Physo132750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 362189 362985 . + 0 ID=Physo132750;Parent=Physo132750;rank=1 scaffold_22 . exon 362189 362985 . + . ID=Physo132750.1;Parent=Physo132750;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 363057 363438 . + 0 ID=Physo132750;Parent=Physo132750;rank=2 scaffold_22 . exon 363057 363438 . + . ID=Physo132750.2;Parent=Physo132750;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 363657 365835 . - . ID=Physo132751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220099;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 363657 365835 . - . ID=Physo132751;Parent=Physo132751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 363657 364103 . - 0 ID=Physo132751;Parent=Physo132751;rank=6 scaffold_22 . exon 363657 364103 . - . ID=Physo132751.6;Parent=Physo132751;constitutive=1;rank=6 scaffold_22 . CDS 364183 364263 . - 0 ID=Physo132751;Parent=Physo132751;rank=5 scaffold_22 . exon 364183 364263 . - . ID=Physo132751.5;Parent=Physo132751;constitutive=1;rank=5 scaffold_22 . CDS 364338 364460 . - 0 ID=Physo132751;Parent=Physo132751;rank=4 scaffold_22 . exon 364338 364460 . - . ID=Physo132751.4;Parent=Physo132751;constitutive=1;rank=4 scaffold_22 . CDS 364530 364760 . - 0 ID=Physo132751;Parent=Physo132751;rank=3 scaffold_22 . exon 364530 364760 . - . ID=Physo132751.3;Parent=Physo132751;constitutive=1;rank=3 scaffold_22 . CDS 364835 365083 . - 0 ID=Physo132751;Parent=Physo132751;rank=2 scaffold_22 . exon 364835 365083 . - . ID=Physo132751.2;Parent=Physo132751;constitutive=1;rank=2 scaffold_22 . CDS 365170 365835 . - 0 ID=Physo132751;Parent=Physo132751;rank=1 scaffold_22 . exon 365170 365835 . - . ID=Physo132751.1;Parent=Physo132751;constitutive=1;rank=1 scaffold_22 . repeat_region 367347 373158 . + . description=Gypsy-2-I_PI-int scaffold_22 ensembl protein_coding_gene 371195 371584 . + . ID=Physo114753;biotype=protein_coding;external_name=estExt_Genewise1.C_220021;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 371195 371584 . + . ID=Physo114753;Parent=Physo114753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 371195 371584 . + . ID=Physo114753.1;Parent=Physo114753;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 371201 371584 . + 0 ID=Physo114753;Parent=Physo114753;rank=1 scaffold_22 ensembl protein_coding_gene 367391 370642 . + . ID=Physo132752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220100;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 367391 370642 . + . ID=Physo132752;Parent=Physo132752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 367391 368198 . + 0 ID=Physo132752;Parent=Physo132752;rank=1 scaffold_22 . exon 367391 368198 . + . ID=Physo132752.1;Parent=Physo132752;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 368327 368555 . + 0 ID=Physo132752;Parent=Physo132752;rank=2 scaffold_22 . exon 368327 368555 . + . ID=Physo132752.2;Parent=Physo132752;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . CDS 368760 369181 . + 0 ID=Physo132752;Parent=Physo132752;rank=3 scaffold_22 . exon 368760 369181 . + . ID=Physo132752.3;Parent=Physo132752;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 369327 370642 . + 0 ID=Physo132752;Parent=Physo132752;rank=4 scaffold_22 . exon 369327 370642 . + . ID=Physo132752.4;Parent=Physo132752;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 ensembl protein_coding_gene 372244 373701 . - . ID=Physo132753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220101;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 372244 373701 . - . ID=Physo132753;Parent=Physo132753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 372244 372750 . - 0 ID=Physo132753;Parent=Physo132753;rank=2 scaffold_22 . exon 372244 372750 . - . ID=Physo132753.2;Parent=Physo132753;constitutive=1;rank=2 scaffold_22 . CDS 372880 373701 . - 0 ID=Physo132753;Parent=Physo132753;rank=1 scaffold_22 . exon 372880 373701 . - . ID=Physo132753.1;Parent=Physo132753;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 375099 375848 . + . ID=Physo132754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220102;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 375099 375848 . + . ID=Physo132754;Parent=Physo132754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 375099 375848 . + 0 ID=Physo132754;Parent=Physo132754;rank=1 scaffold_22 . exon 375099 375848 . + . ID=Physo132754.1;Parent=Physo132754;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 376167 377618 . - . ID=Physo156571;biotype=protein_coding;external_name=C_scaffold_22000026;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 376167 377618 . - . ID=Physo156571;Parent=Physo156571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 376167 377004 . - 0 ID=Physo156571;Parent=Physo156571;rank=3 scaffold_22 . exon 376167 377004 . - . ID=Physo156571.3;Parent=Physo156571;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 377088 377115 . - 0 ID=Physo156571;Parent=Physo156571;rank=2 scaffold_22 . exon 377088 377115 . - . ID=Physo156571.2;Parent=Physo156571;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . CDS 377204 377618 . - 0 ID=Physo156571;Parent=Physo156571;rank=1 scaffold_22 . exon 377204 377618 . - . ID=Physo156571.1;Parent=Physo156571;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . repeat_region 377397 377457 . ? . description=dust scaffold_22 . repeat_region 377428 377456 . ? . description=trf scaffold_22 . repeat_region 381477 381485 . ? . description=dust scaffold_22 . biological_region 382428 382434 0.999 + . logic_name=eponine scaffold_22 . biological_region 382493 382496 0.999 + . logic_name=eponine scaffold_22 . biological_region 382817 382820 0.999 - . logic_name=eponine scaffold_22 . biological_region 382969 382972 0.999 + . logic_name=eponine scaffold_22 . repeat_region 383073 383109 . ? . description=trf scaffold_22 . biological_region 383134 383139 0.999 + . logic_name=eponine scaffold_22 . biological_region 383248 383253 0.999 - . logic_name=eponine scaffold_22 . biological_region 383288 383290 0.999 + . logic_name=eponine scaffold_22 . biological_region 383296 383297 0.999 - . logic_name=eponine scaffold_22 . biological_region 383309 383311 0.999 + . logic_name=eponine scaffold_22 . biological_region 383332 383337 0.999 + . logic_name=eponine scaffold_22 . biological_region 383474 383474 0.999 - . logic_name=eponine scaffold_22 . biological_region 383496 383500 0.999 - . logic_name=eponine scaffold_22 . biological_region 383532 383534 0.999 - . logic_name=eponine scaffold_22 . biological_region 383865 383867 0.999 - . logic_name=eponine scaffold_22 . biological_region 383941 383944 0.999 + . logic_name=eponine scaffold_22 . biological_region 383950 383951 0.999 - . logic_name=eponine scaffold_22 . biological_region 384024 384024 0.999 - . logic_name=eponine scaffold_22 . biological_region 384385 384386 0.999 - . logic_name=eponine scaffold_22 . repeat_region 384444 384470 . ? . description=trf scaffold_22 . biological_region 384636 384641 0.999 + . logic_name=eponine scaffold_22 . biological_region 384663 384668 0.999 - . logic_name=eponine scaffold_22 . biological_region 384709 384714 0.999 - . logic_name=eponine scaffold_22 . biological_region 384730 384734 0.999 - . logic_name=eponine scaffold_22 . biological_region 384746 384751 0.999 + . logic_name=eponine scaffold_22 . biological_region 384781 384788 0.999 - . logic_name=eponine scaffold_22 . biological_region 384787 384788 0.999 + . logic_name=eponine scaffold_22 . biological_region 384815 384817 0.999 - . logic_name=eponine scaffold_22 . repeat_region 384839 384889 . ? . description=dust scaffold_22 . biological_region 384941 384944 0.999 - . logic_name=eponine scaffold_22 . biological_region 385232 385234 0.999 + . logic_name=eponine scaffold_22 . biological_region 385255 385259 0.999 + . logic_name=eponine scaffold_22 . biological_region 385272 385274 0.999 - . logic_name=eponine scaffold_22 . biological_region 385326 385331 0.999 + . logic_name=eponine scaffold_22 . biological_region 385425 385429 0.999 + . logic_name=eponine scaffold_22 . biological_region 385489 385496 0.999 + . logic_name=eponine scaffold_22 . biological_region 385528 385534 0.999 + . logic_name=eponine scaffold_22 . biological_region 385602 385604 0.999 + . logic_name=eponine scaffold_22 . biological_region 385626 385628 0.999 - . logic_name=eponine scaffold_22 . biological_region 385639 385642 0.999 - . logic_name=eponine scaffold_22 . biological_region 385651 385656 0.999 + . logic_name=eponine scaffold_22 . biological_region 385654 385660 0.999 - . logic_name=eponine scaffold_22 . biological_region 385669 385675 0.999 - . logic_name=eponine scaffold_22 . biological_region 385687 385691 0.999 - . logic_name=eponine scaffold_22 . biological_region 385695 385696 0.999 + . logic_name=eponine scaffold_22 . biological_region 385710 385714 0.999 - . logic_name=eponine scaffold_22 . biological_region 385724 385732 0.999 - . logic_name=eponine scaffold_22 . repeat_region 386025 386043 . ? . description=dust scaffold_22 . biological_region 386388 386392 0.999 + . logic_name=eponine scaffold_22 . biological_region 386420 386425 0.999 + . logic_name=eponine scaffold_22 . repeat_region 386524 386573 . ? . description=dust scaffold_22 . repeat_region 386646 386655 . ? . description=dust scaffold_22 . repeat_region 386795 386812 . ? . description=dust scaffold_22 ensembl protein_coding_gene 377992 381460 . + . ID=Physo132756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220104;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 377992 381460 . + . ID=Physo132756;Parent=Physo132756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 377992 378681 . + 0 ID=Physo132756;Parent=Physo132756;rank=1 scaffold_22 . exon 377992 378681 . + . ID=Physo132756.1;Parent=Physo132756;constitutive=1;rank=1 scaffold_22 . CDS 378740 378930 . + 0 ID=Physo132756;Parent=Physo132756;rank=2 scaffold_22 . exon 378740 378930 . + . ID=Physo132756.2;Parent=Physo132756;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 379006 379111 . + 0 ID=Physo132756;Parent=Physo132756;rank=3 scaffold_22 . exon 379006 379111 . + . ID=Physo132756.3;Parent=Physo132756;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 379184 381460 . + 0 ID=Physo132756;Parent=Physo132756;rank=4 scaffold_22 . exon 379184 381460 . + . ID=Physo132756.4;Parent=Physo132756;constitutive=1;rank=4 scaffold_22 ensembl protein_coding_gene 382400 385877 . - . ID=Physo156574;biotype=protein_coding;external_name=C_scaffold_22000029;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 382400 385877 . - . ID=Physo156574;Parent=Physo156574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 382400 382644 . - 0 ID=Physo156574;Parent=Physo156574;rank=6 scaffold_22 . exon 382400 382644 . - . ID=Physo156574.6;Parent=Physo156574;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 382786 382846 . - 0 ID=Physo156574;Parent=Physo156574;rank=5 scaffold_22 . exon 382786 382846 . - . ID=Physo156574.5;Parent=Physo156574;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_22 . CDS 383069 383480 . - 0 ID=Physo156574;Parent=Physo156574;rank=4 scaffold_22 . exon 383069 383480 . - . ID=Physo156574.4;Parent=Physo156574;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 383975 384395 . - 0 ID=Physo156574;Parent=Physo156574;rank=3 scaffold_22 . exon 383975 384395 . - . ID=Physo156574.3;Parent=Physo156574;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_22 . CDS 384477 384954 . - 0 ID=Physo156574;Parent=Physo156574;rank=2 scaffold_22 . exon 384477 384954 . - . ID=Physo156574.2;Parent=Physo156574;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 385320 385877 . - 0 ID=Physo156574;Parent=Physo156574;rank=1 scaffold_22 . exon 385320 385877 . - . ID=Physo156574.1;Parent=Physo156574;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 388703 391814 . + . ID=Physo132758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220106;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 388703 391814 . + . ID=Physo132758;Parent=Physo132758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 388703 391606 . + 0 ID=Physo132758;Parent=Physo132758;rank=1 scaffold_22 . exon 388703 391814 . + . ID=Physo132758.1;Parent=Physo132758;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 391899 394826 . + . ID=Physo132759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220107;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 391899 394826 . + . ID=Physo132759;Parent=Physo132759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 391899 394826 . + 0 ID=Physo132759;Parent=Physo132759;rank=1 scaffold_22 . exon 391899 394826 . + . ID=Physo132759.1;Parent=Physo132759;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 395203 396648 . + . ID=Physo132760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220108;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 395203 396648 . + . ID=Physo132760;Parent=Physo132760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 395203 396648 . + 0 ID=Physo132760;Parent=Physo132760;rank=1 scaffold_22 . exon 395203 396648 . + . ID=Physo132760.1;Parent=Physo132760;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 396921 398438 . - . ID=Physo132761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220109;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 396921 398438 . - . ID=Physo132761;Parent=Physo132761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 396921 397137 . - 0 ID=Physo132761;Parent=Physo132761;rank=4 scaffold_22 . exon 396921 397137 . - . ID=Physo132761.4;Parent=Physo132761;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 397215 398094 . - 0 ID=Physo132761;Parent=Physo132761;rank=3 scaffold_22 . CDS 398165 398243 . - 0 ID=Physo132761;Parent=Physo132761;rank=2 scaffold_22 . CDS 398322 398381 . - 0 ID=Physo132761;Parent=Physo132761;rank=1 scaffold_22 . biological_region 399254 399258 0.999 + . logic_name=eponine scaffold_22 . biological_region 399277 399281 0.999 - . logic_name=eponine scaffold_22 . biological_region 399287 399289 0.999 + . logic_name=eponine scaffold_22 . biological_region 399332 399339 0.999 + . logic_name=eponine scaffold_22 . repeat_region 402202 402239 . ? . description=trf scaffold_22 . biological_region 402477 402486 0.999 - . logic_name=eponine scaffold_22 . biological_region 402881 402887 0.999 + . logic_name=eponine scaffold_22 . biological_region 402917 402918 0.999 - . logic_name=eponine scaffold_22 . biological_region 402948 402954 0.999 + . logic_name=eponine scaffold_22 . biological_region 402984 402987 0.999 - . logic_name=eponine scaffold_22 . biological_region 403016 403023 0.999 - . logic_name=eponine scaffold_22 . biological_region 403071 403071 0.999 + . logic_name=eponine scaffold_22 . biological_region 403114 403117 0.999 - . logic_name=eponine scaffold_22 . biological_region 403286 403289 0.999 + . logic_name=eponine scaffold_22 . biological_region 403790 403792 0.999 + . logic_name=eponine scaffold_22 . biological_region 403833 403837 0.999 - . logic_name=eponine scaffold_22 . repeat_region 405215 405327 . + . description=(CAG)n scaffold_22 . exon 397215 398094 . - . ID=Physo132761.3;Parent=Physo132761;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_22 . exon 398165 398243 . - . ID=Physo132761.2;Parent=Physo132761;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . exon 398322 398438 . - . ID=Physo132761.1;Parent=Physo132761;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 398786 399730 . - . ID=Physo132762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220110;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 398786 399730 . - . ID=Physo132762;Parent=Physo132762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 398786 399730 . - 0 ID=Physo132762;Parent=Physo132762;rank=1 scaffold_22 . exon 398786 399730 . - . ID=Physo132762.1;Parent=Physo132762;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 400369 400968 . + . ID=Physo132763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220111;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 400369 400968 . + . ID=Physo132763;Parent=Physo132763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 400369 400893 . + 0 ID=Physo132763;Parent=Physo132763;rank=1 scaffold_22 . exon 400369 400968 . + . ID=Physo132763.1;Parent=Physo132763;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 401802 404075 . - . ID=Physo132764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220112;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 401802 404075 . - . ID=Physo132764;Parent=Physo132764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 401802 404075 . - 0 ID=Physo132764;Parent=Physo132764;rank=1 scaffold_22 . exon 401802 404075 . - . ID=Physo132764.1;Parent=Physo132764;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 405027 407340 . + . ID=Physo132765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220113;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 405027 407340 . + . ID=Physo132765;Parent=Physo132765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 405027 407193 . + 0 ID=Physo132765;Parent=Physo132765;rank=1 scaffold_22 . exon 405027 407193 . + . ID=Physo132765.1;Parent=Physo132765;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 407264 407340 . + 0 ID=Physo132765;Parent=Physo132765;rank=2 scaffold_22 . repeat_region 409632 409641 . ? . description=dust scaffold_22 . repeat_region 412620 412663 . ? . description=dust scaffold_22 . repeat_region 415642 415672 . ? . description=dust scaffold_22 . repeat_region 415726 415735 . ? . description=dust scaffold_22 . exon 407264 407340 . + . ID=Physo132765.2;Parent=Physo132765;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 ensembl protein_coding_gene 409621 410607 . - . ID=Physo132767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220115;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 409621 410607 . - . ID=Physo132767;Parent=Physo132767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 409621 410607 . - 0 ID=Physo132767;Parent=Physo132767;rank=1 scaffold_22 . exon 409621 410607 . - . ID=Physo132767.1;Parent=Physo132767;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 412603 415346 . + . ID=Physo132768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220116;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 412603 415346 . + . ID=Physo132768;Parent=Physo132768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 412603 412693 . + . ID=Physo132768.1;Parent=Physo132768;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 412676 412693 . + 0 ID=Physo132768;Parent=Physo132768;rank=1 scaffold_22 . CDS 412764 412912 . + 0 ID=Physo132768;Parent=Physo132768;rank=2 scaffold_22 . exon 412764 412912 . + . ID=Physo132768.2;Parent=Physo132768;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 412991 414764 . + 0 ID=Physo132768;Parent=Physo132768;rank=3 scaffold_22 . exon 412991 415346 . + . ID=Physo132768.3;Parent=Physo132768;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_22 ensembl protein_coding_gene 416885 420574 . + . ID=Physo132770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220118;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 416885 420574 . + . ID=Physo132770;Parent=Physo132770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 416885 420574 . + 0 ID=Physo132770;Parent=Physo132770;rank=1 scaffold_22 . exon 416885 420574 . + . ID=Physo132770.1;Parent=Physo132770;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 407716 408698 . - . ID=Physo156581;biotype=protein_coding;external_name=C_scaffold_22000036;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 407716 408698 . - . ID=Physo156581;Parent=Physo156581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 407716 407951 . - 0 ID=Physo156581;Parent=Physo156581;rank=5 scaffold_22 . exon 407716 407951 . - . ID=Physo156581.5;Parent=Physo156581;constitutive=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 408043 408076 . - 0 ID=Physo156581;Parent=Physo156581;rank=4 scaffold_22 . exon 408043 408076 . - . ID=Physo156581.4;Parent=Physo156581;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_22 . CDS 408168 408234 . - 0 ID=Physo156581;Parent=Physo156581;rank=3 scaffold_22 . exon 408168 408234 . - . ID=Physo156581.3;Parent=Physo156581;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 408328 408536 . - 0 ID=Physo156581;Parent=Physo156581;rank=2 scaffold_22 . exon 408328 408536 . - . ID=Physo156581.2;Parent=Physo156581;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 408561 408698 . - 0 ID=Physo156581;Parent=Physo156581;rank=1 scaffold_22 . exon 408561 408698 . - . ID=Physo156581.1;Parent=Physo156581;constitutive=1;rank=1 scaffold_22 . biological_region 416963 416963 0.999 - . logic_name=eponine scaffold_22 . biological_region 417014 417020 0.999 - . logic_name=eponine scaffold_22 . repeat_region 419045 419605 . ? . description=trf scaffold_22 . biological_region 420247 420250 0.999 + . logic_name=eponine scaffold_22 . biological_region 420264 420268 0.999 + . logic_name=eponine scaffold_22 . biological_region 420301 420304 0.999 + . logic_name=eponine scaffold_22 . biological_region 420340 420341 0.999 + . logic_name=eponine scaffold_22 . biological_region 420400 420406 0.999 - . logic_name=eponine scaffold_22 . biological_region 422678 422680 0.999 + . logic_name=eponine scaffold_22 . biological_region 425283 425285 0.999 + . logic_name=eponine scaffold_22 . biological_region 425326 425329 0.999 + . logic_name=eponine scaffold_22 . biological_region 425343 425345 0.999 + . logic_name=eponine scaffold_22 . biological_region 425353 425357 0.999 - . logic_name=eponine scaffold_22 . biological_region 425366 425366 0.999 + . logic_name=eponine scaffold_22 . biological_region 425384 425386 0.999 + . logic_name=eponine scaffold_22 . biological_region 425513 425516 0.999 - . logic_name=eponine scaffold_22 . biological_region 425638 425641 0.999 + . logic_name=eponine scaffold_22 . biological_region 425648 425650 0.999 - . logic_name=eponine scaffold_22 . biological_region 425854 425858 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 426722 427887 . + . ID=Physo108647;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_220008;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 426722 427887 . + . ID=Physo108647;Parent=Physo108647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 426722 427887 . + . ID=Physo108647.1;Parent=Physo108647;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 426763 427818 . + 0 ID=Physo108647;Parent=Physo108647;rank=1 scaffold_22 ensembl protein_coding_gene 420575 421691 . + . ID=Physo132771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220119;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 420575 421691 . + . ID=Physo132771;Parent=Physo132771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 420575 421691 . + . ID=Physo132771.1;Parent=Physo132771;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 420858 421691 . + 0 ID=Physo132771;Parent=Physo132771;rank=1 scaffold_22 ensembl protein_coding_gene 421876 425754 . - . ID=Physo132772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220120;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 421876 425754 . - . ID=Physo132772;Parent=Physo132772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 421876 425754 . - 0 ID=Physo132772;Parent=Physo132772;rank=1 scaffold_22 . exon 421876 425754 . - . ID=Physo132772.1;Parent=Physo132772;constitutive=1;rank=1 scaffold_22 . repeat_region 434474 434482 . ? . description=dust scaffold_22 ensembl protein_coding_gene 427981 429464 . - . ID=Physo132774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220122;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 427981 429464 . - . ID=Physo132774;Parent=Physo132774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 427981 428071 . - 0 ID=Physo132774;Parent=Physo132774;rank=3 scaffold_22 . exon 427981 428071 . - . ID=Physo132774.3;Parent=Physo132774;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 428151 428258 . - 0 ID=Physo132774;Parent=Physo132774;rank=2 scaffold_22 . exon 428151 428258 . - . ID=Physo132774.2;Parent=Physo132774;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 428329 429464 . - 0 ID=Physo132774;Parent=Physo132774;rank=1 scaffold_22 . exon 428329 429464 . - . ID=Physo132774.1;Parent=Physo132774;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 429623 430324 . + . ID=Physo132775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220123;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 429623 430324 . + . ID=Physo132775;Parent=Physo132775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 429623 429880 . + 0 ID=Physo132775;Parent=Physo132775;rank=1 scaffold_22 . exon 429623 429880 . + . ID=Physo132775.1;Parent=Physo132775;constitutive=1;rank=1 scaffold_22 . CDS 429968 430324 . + 0 ID=Physo132775;Parent=Physo132775;rank=2 scaffold_22 . exon 429968 430324 . + . ID=Physo132775.2;Parent=Physo132775;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 430607 431799 . + . ID=Physo132776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220124;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 430607 431799 . + . ID=Physo132776;Parent=Physo132776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 430607 431036 . + . ID=Physo132776.1;Parent=Physo132776;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_22 . CDS 430711 431036 . + 0 ID=Physo132776;Parent=Physo132776;rank=1 scaffold_22 . CDS 431101 431203 . + 0 ID=Physo132776;Parent=Physo132776;rank=2 scaffold_22 . exon 431101 431203 . + . ID=Physo132776.2;Parent=Physo132776;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 431287 431799 . + 0 ID=Physo132776;Parent=Physo132776;rank=3 scaffold_22 . exon 431287 431799 . + . ID=Physo132776.3;Parent=Physo132776;constitutive=1;rank=3 scaffold_22 ensembl protein_coding_gene 432213 432743 . - . ID=Physo132777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220125;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 432213 432743 . - . ID=Physo132777;Parent=Physo132777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 432213 432743 . - 0 ID=Physo132777;Parent=Physo132777;rank=1 scaffold_22 . exon 432213 432743 . - . ID=Physo132777.1;Parent=Physo132777;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 433097 434395 . - . ID=Physo132778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220126;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 433097 434395 . - . ID=Physo132778;Parent=Physo132778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 433097 433631 . - 0 ID=Physo132778;Parent=Physo132778;rank=3 scaffold_22 . exon 433097 433631 . - . ID=Physo132778.3;Parent=Physo132778;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 433674 434246 . - 0 ID=Physo132778;Parent=Physo132778;rank=2 scaffold_22 . exon 433674 434246 . - . ID=Physo132778.2;Parent=Physo132778;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 434373 434395 . - 0 ID=Physo132778;Parent=Physo132778;rank=1 scaffold_22 . exon 434373 434395 . - . ID=Physo132778.1;Parent=Physo132778;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 435119 436555 . + . ID=Physo132779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220127;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 435119 436555 . + . ID=Physo132779;Parent=Physo132779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 435119 436555 . + 0 ID=Physo132779;Parent=Physo132779;rank=1 scaffold_22 . exon 435119 436555 . + . ID=Physo132779.1;Parent=Physo132779;constitutive=1;rank=1 scaffold_22 . biological_region 438024 438027 0.999 - . logic_name=eponine scaffold_22 . repeat_region 444311 444354 . ? . description=trf scaffold_22 . repeat_region 444311 444364 . ? . description=trf scaffold_22 . repeat_region 444323 444369 . ? . description=trf scaffold_22 ensembl protein_coding_gene 438459 440868 . - . ID=Physo132780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220128;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 438459 440868 . - . ID=Physo132780;Parent=Physo132780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 438459 439003 . - 0 ID=Physo132780;Parent=Physo132780;rank=6 scaffold_22 . exon 438459 439003 . - . ID=Physo132780.6;Parent=Physo132780;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 439078 439096 . - 0 ID=Physo132780;Parent=Physo132780;rank=5 scaffold_22 . exon 439078 439096 . - . ID=Physo132780.5;Parent=Physo132780;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_22 . CDS 439290 439318 . - 0 ID=Physo132780;Parent=Physo132780;rank=4 scaffold_22 . exon 439290 439318 . - . ID=Physo132780.4;Parent=Physo132780;constitutive=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 439409 439567 . - 0 ID=Physo132780;Parent=Physo132780;rank=3 scaffold_22 . exon 439409 439567 . - . ID=Physo132780.3;Parent=Physo132780;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 439764 440073 . - 0 ID=Physo132780;Parent=Physo132780;rank=2 scaffold_22 . exon 439764 440073 . - . ID=Physo132780.2;Parent=Physo132780;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 440368 440868 . - 0 ID=Physo132780;Parent=Physo132780;rank=1 scaffold_22 . exon 440368 440868 . - . ID=Physo132780.1;Parent=Physo132780;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 446653 448301 . + . ID=Physo132781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220129;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 446653 448301 . + . ID=Physo132781;Parent=Physo132781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 446653 446873 . + 0 ID=Physo132781;Parent=Physo132781;rank=1 scaffold_22 . exon 446653 446873 . + . ID=Physo132781.1;Parent=Physo132781;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 447000 447752 . + 0 ID=Physo132781;Parent=Physo132781;rank=2 scaffold_22 . CDS 447839 447944 . + 0 ID=Physo132781;Parent=Physo132781;rank=3 scaffold_22 . CDS 448020 448167 . + 0 ID=Physo132781;Parent=Physo132781;rank=4 scaffold_22 . CDS 448237 448301 . + 0 ID=Physo132781;Parent=Physo132781;rank=5 scaffold_22 . exon 447000 447752 . + . ID=Physo132781.2;Parent=Physo132781;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . exon 447839 447944 . + . ID=Physo132781.3;Parent=Physo132781;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . exon 448020 448167 . + . ID=Physo132781.4;Parent=Physo132781;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_22 . exon 448237 448301 . + . ID=Physo132781.5;Parent=Physo132781;constitutive=1;ensembl_phase=1;rank=5 scaffold_22 ensembl protein_coding_gene 451505 455440 . + . ID=Physo132784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220132;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 451505 455440 . + . ID=Physo132784;Parent=Physo132784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 451505 451554 . + 0 ID=Physo132784;Parent=Physo132784;rank=1 scaffold_22 . exon 451505 451554 . + . ID=Physo132784.1;Parent=Physo132784;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 451651 451855 . + 0 ID=Physo132784;Parent=Physo132784;rank=2 scaffold_22 . exon 451651 451855 . + . ID=Physo132784.2;Parent=Physo132784;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 451934 453674 . + 0 ID=Physo132784;Parent=Physo132784;rank=3 scaffold_22 . exon 451934 453674 . + . ID=Physo132784.3;Parent=Physo132784;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_22 . CDS 453882 454355 . + 0 ID=Physo132784;Parent=Physo132784;rank=4 scaffold_22 . exon 453882 454355 . + . ID=Physo132784.4;Parent=Physo132784;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 454424 454451 . + 0 ID=Physo132784;Parent=Physo132784;rank=5 scaffold_22 . exon 454424 454451 . + . ID=Physo132784.5;Parent=Physo132784;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_22 . CDS 454534 455440 . + 0 ID=Physo132784;Parent=Physo132784;rank=6 scaffold_22 . exon 454534 455440 . + . ID=Physo132784.6;Parent=Physo132784;constitutive=1;ensembl_phase=2;rank=6 scaffold_22 ensembl protein_coding_gene 455644 458348 . - . ID=Physo132785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220133;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 455644 458348 . - . ID=Physo132785;Parent=Physo132785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 455644 455808 . - 0 ID=Physo132785;Parent=Physo132785;rank=9 scaffold_22 . exon 455644 455808 . - . ID=Physo132785.9;Parent=Physo132785;constitutive=1;rank=9 scaffold_22 . CDS 455879 455947 . - 0 ID=Physo132785;Parent=Physo132785;rank=8 scaffold_22 . exon 455879 455947 . - . ID=Physo132785.8;Parent=Physo132785;constitutive=1;rank=8 scaffold_22 . CDS 456025 456174 . - 0 ID=Physo132785;Parent=Physo132785;rank=7 scaffold_22 . exon 456025 456174 . - . ID=Physo132785.7;Parent=Physo132785;constitutive=1;rank=7 scaffold_22 . CDS 456246 456311 . - 0 ID=Physo132785;Parent=Physo132785;rank=6 scaffold_22 . exon 456246 456311 . - . ID=Physo132785.6;Parent=Physo132785;constitutive=1;rank=6 scaffold_22 . CDS 456385 456447 . - 0 ID=Physo132785;Parent=Physo132785;rank=5 scaffold_22 . exon 456385 456447 . - . ID=Physo132785.5;Parent=Physo132785;constitutive=1;rank=5 scaffold_22 . CDS 456519 457259 . - 0 ID=Physo132785;Parent=Physo132785;rank=4 scaffold_22 . exon 456519 457259 . - . ID=Physo132785.4;Parent=Physo132785;constitutive=1;rank=4 scaffold_22 . CDS 457328 457991 . - 0 ID=Physo132785;Parent=Physo132785;rank=3 scaffold_22 . CDS 458060 458243 . - 0 ID=Physo132785;Parent=Physo132785;rank=2 scaffold_22 . CDS 458324 458348 . - 0 ID=Physo132785;Parent=Physo132785;rank=1 scaffold_22 ensembl protein_coding_gene 448407 451295 . - . ID=Physo156585;biotype=protein_coding;external_name=C_scaffold_22000040;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 448407 451295 . - . ID=Physo156585;Parent=Physo156585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 448407 449414 . - 0 ID=Physo156585;Parent=Physo156585;rank=4 scaffold_22 . exon 448407 449414 . - . ID=Physo156585.4;Parent=Physo156585;constitutive=1;rank=4 scaffold_22 . CDS 449445 449691 . - 0 ID=Physo156585;Parent=Physo156585;rank=3 scaffold_22 . exon 449445 449691 . - . ID=Physo156585.3;Parent=Physo156585;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 450079 450406 . - 0 ID=Physo156585;Parent=Physo156585;rank=2 scaffold_22 . exon 450079 450406 . - . ID=Physo156585.2;Parent=Physo156585;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . CDS 450455 451295 . - 0 ID=Physo156585;Parent=Physo156585;rank=1 scaffold_22 . exon 450455 451295 . - . ID=Physo156585.1;Parent=Physo156585;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . repeat_region 457264 457280 . ? . description=dust scaffold_22 . biological_region 457749 457755 0.999 - . logic_name=eponine scaffold_22 . biological_region 459696 459700 0.999 - . logic_name=eponine scaffold_22 . biological_region 459776 459779 0.999 - . logic_name=eponine scaffold_22 . biological_region 462089 462089 0.999 - . logic_name=eponine scaffold_22 . biological_region 463732 463734 0.999 - . logic_name=eponine scaffold_22 . biological_region 463757 463758 0.999 + . logic_name=eponine scaffold_22 . biological_region 463863 463863 0.999 + . logic_name=eponine scaffold_22 . biological_region 463884 463893 0.999 - . logic_name=eponine scaffold_22 . biological_region 463903 463909 0.999 + . logic_name=eponine scaffold_22 . repeat_region 463922 463981 . ? . description=dust scaffold_22 . biological_region 463940 463946 0.999 + . logic_name=eponine scaffold_22 . biological_region 464650 464653 0.999 + . logic_name=eponine scaffold_22 . biological_region 464772 464774 0.999 - . logic_name=eponine scaffold_22 . biological_region 465364 465368 0.999 + . logic_name=eponine scaffold_22 . exon 457328 457991 . - . ID=Physo132785.3;Parent=Physo132785;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . exon 458060 458243 . - . ID=Physo132785.2;Parent=Physo132785;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . exon 458324 458348 . - . ID=Physo132785.1;Parent=Physo132785;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 459008 460328 . - . ID=Physo132786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220134;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 459008 460328 . - . ID=Physo132786;Parent=Physo132786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 459008 460028 . - 0 ID=Physo132786;Parent=Physo132786;rank=2 scaffold_22 . exon 459008 460028 . - . ID=Physo132786.2;Parent=Physo132786;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 460099 460220 . - 0 ID=Physo132786;Parent=Physo132786;rank=1 scaffold_22 . exon 460099 460328 . - . ID=Physo132786.1;Parent=Physo132786;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 461591 463020 . + . ID=Physo132787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220135;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 461591 463020 . + . ID=Physo132787;Parent=Physo132787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 461591 461731 . + 0 ID=Physo132787;Parent=Physo132787;rank=1 scaffold_22 . exon 461591 461731 . + . ID=Physo132787.1;Parent=Physo132787;constitutive=1;rank=1 scaffold_22 . CDS 461809 463020 . + 0 ID=Physo132787;Parent=Physo132787;rank=2 scaffold_22 . exon 461809 463020 . + . ID=Physo132787.2;Parent=Physo132787;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 464381 464818 . + . ID=Physo132789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220137;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 464381 464818 . + . ID=Physo132789;Parent=Physo132789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 464381 464818 . + . ID=Physo132789.1;Parent=Physo132789;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 464382 464768 . + 0 ID=Physo132789;Parent=Physo132789;rank=1 scaffold_22 ensembl protein_coding_gene 463327 464007 . - . ID=Physo156590;biotype=protein_coding;external_name=C_scaffold_22000045;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 463327 464007 . - . ID=Physo156590;Parent=Physo156590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 463327 463836 . - 0 ID=Physo156590;Parent=Physo156590;rank=2 scaffold_22 . exon 463327 463836 . - . ID=Physo156590.2;Parent=Physo156590;constitutive=1;rank=2 scaffold_22 . CDS 463876 464007 . - 0 ID=Physo156590;Parent=Physo156590;rank=1 scaffold_22 . exon 463876 464007 . - . ID=Physo156590.1;Parent=Physo156590;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 464942 466888 . - . ID=Physo156594;biotype=protein_coding;external_name=C_scaffold_22000049;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 464942 466888 . - . ID=Physo156594;Parent=Physo156594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 464942 466558 . - 0 ID=Physo156594;Parent=Physo156594;rank=2 scaffold_22 . exon 464942 466558 . - . ID=Physo156594.2;Parent=Physo156594;constitutive=1;rank=2 scaffold_22 . CDS 466682 466888 . - 0 ID=Physo156594;Parent=Physo156594;rank=1 scaffold_22 . repeat_region 473727 473746 . ? . description=trf scaffold_22 . repeat_region 475666 475799 . ? . description=trf scaffold_22 . repeat_region 475799 475875 . ? . description=trf scaffold_22 ensembl protein_coding_gene 467671 472978 . + . ID=Physo132791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220139;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 467671 472978 . + . ID=Physo132791;Parent=Physo132791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 467671 467784 . + 0 ID=Physo132791;Parent=Physo132791;rank=1 scaffold_22 . exon 467671 467784 . + . ID=Physo132791.1;Parent=Physo132791;constitutive=1;rank=1 scaffold_22 . CDS 467837 468243 . + 0 ID=Physo132791;Parent=Physo132791;rank=2 scaffold_22 . exon 467837 468243 . + . ID=Physo132791.2;Parent=Physo132791;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 468314 469700 . + 0 ID=Physo132791;Parent=Physo132791;rank=3 scaffold_22 . exon 468314 469700 . + . ID=Physo132791.3;Parent=Physo132791;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 469768 469845 . + 0 ID=Physo132791;Parent=Physo132791;rank=4 scaffold_22 . exon 469768 469845 . + . ID=Physo132791.4;Parent=Physo132791;constitutive=1;rank=4 scaffold_22 . CDS 469910 470050 . + 0 ID=Physo132791;Parent=Physo132791;rank=5 scaffold_22 . exon 469910 470050 . + . ID=Physo132791.5;Parent=Physo132791;constitutive=1;rank=5 scaffold_22 . CDS 470115 472818 . + 0 ID=Physo132791;Parent=Physo132791;rank=6 scaffold_22 . exon 470115 472818 . + . ID=Physo132791.6;Parent=Physo132791;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_22 . CDS 472887 472978 . + 0 ID=Physo132791;Parent=Physo132791;rank=7 scaffold_22 . exon 472887 472978 . + . ID=Physo132791.7;Parent=Physo132791;constitutive=1;ensembl_phase=1;rank=7 scaffold_22 ensembl protein_coding_gene 473405 473932 . - . ID=Physo132792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220140;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 473405 473932 . - . ID=Physo132792;Parent=Physo132792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 473405 473932 . - 0 ID=Physo132792;Parent=Physo132792;rank=1 scaffold_22 . exon 473405 473932 . - . ID=Physo132792.1;Parent=Physo132792;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 474021 475262 . - . ID=Physo132793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220141;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 474021 475262 . - . ID=Physo132793;Parent=Physo132793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 474021 475262 . - . ID=Physo132793.1;Parent=Physo132793;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_22 . CDS 474177 475262 . - 0 ID=Physo132793;Parent=Physo132793;rank=1 scaffold_22 . exon 466682 466888 . - . ID=Physo156594.1;Parent=Physo156594;constitutive=1;rank=1 scaffold_22 . biological_region 476656 476657 0.999 + . logic_name=eponine scaffold_22 . biological_region 476729 476730 0.999 + . logic_name=eponine scaffold_22 . biological_region 476751 476759 0.999 + . logic_name=eponine scaffold_22 . biological_region 476770 476773 0.999 - . logic_name=eponine scaffold_22 . biological_region 476862 476866 0.999 - . logic_name=eponine scaffold_22 . biological_region 477365 477365 0.999 + . logic_name=eponine scaffold_22 . biological_region 477384 477386 0.999 - . logic_name=eponine scaffold_22 . biological_region 478427 478429 0.999 - . logic_name=eponine scaffold_22 . biological_region 478750 478753 0.999 + . logic_name=eponine scaffold_22 . repeat_region 479089 479097 . ? . description=dust scaffold_22 . biological_region 481475 481477 0.999 - . logic_name=eponine scaffold_22 . repeat_region 485764 485800 . ? . description=dust scaffold_22 . repeat_region 491675 491694 . ? . description=trf scaffold_22 . repeat_region 493546 494452 . + . description=GypsyPi-1c_I-int scaffold_22 . repeat_region 494538 494600 . + . description=GypsyPi-1c_I-int scaffold_22 . repeat_region 494853 495546 . + . description=GypsyPi-1c_I-int scaffold_22 . repeat_region 496178 496335 . ? . description=trf scaffold_22 ensembl protein_coding_gene 493175 495590 . + . ID=Physo132794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220142;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 493175 495590 . + . ID=Physo132794;Parent=Physo132794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 493175 494448 . + 0 ID=Physo132794;Parent=Physo132794;rank=1 scaffold_22 . exon 493175 494448 . + . ID=Physo132794.1;Parent=Physo132794;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 494537 495590 . + 0 ID=Physo132794;Parent=Physo132794;rank=2 scaffold_22 . exon 494537 495590 . + . ID=Physo132794.2;Parent=Physo132794;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . biological_region 498115 498119 0.999 + . logic_name=eponine scaffold_22 . biological_region 498168 498173 0.999 - . logic_name=eponine scaffold_22 . biological_region 498707 498714 0.999 + . logic_name=eponine scaffold_22 . biological_region 498826 498830 0.999 - . logic_name=eponine scaffold_22 . repeat_region 502917 503035 . ? . description=dust scaffold_22 . repeat_region 502917 503035 . + . description=(TC)n scaffold_22 . repeat_region 503702 503709 . ? . description=dust scaffold_22 . repeat_region 512337 512359 . ? . description=trf scaffold_22 . biological_region 518380 518383 0.999 + . logic_name=eponine scaffold_22 . repeat_region 518817 518827 . ? . description=dust scaffold_22 . repeat_region 519660 519667 . ? . description=dust scaffold_22 . biological_region 522494 522497 0.999 - . logic_name=eponine scaffold_22 . biological_region 522545 522555 0.999 + . logic_name=eponine scaffold_22 . biological_region 522567 522571 0.999 + . logic_name=eponine scaffold_22 . biological_region 522769 522769 0.999 - . logic_name=eponine scaffold_22 . biological_region 522900 522905 0.999 - . logic_name=eponine scaffold_22 . biological_region 523161 523162 0.999 + . logic_name=eponine scaffold_22 . biological_region 523257 523261 0.999 - . logic_name=eponine scaffold_22 . biological_region 523310 523317 0.999 + . logic_name=eponine scaffold_22 . biological_region 523317 523319 0.999 - . logic_name=eponine scaffold_22 . biological_region 524540 524540 0.999 - . logic_name=eponine scaffold_22 . biological_region 524838 524841 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 522201 523073 . + . ID=Physo132795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220143;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 522201 523073 . + . ID=Physo132795;Parent=Physo132795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 522201 523073 . + . ID=Physo132795.1;Parent=Physo132795;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 522259 522933 . + 0 ID=Physo132795;Parent=Physo132795;rank=1 scaffold_22 ensembl protein_coding_gene 523117 524826 . - . ID=Physo132796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220144;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 523117 524826 . - . ID=Physo132796;Parent=Physo132796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 523117 524826 . - 0 ID=Physo132796;Parent=Physo132796;rank=1 scaffold_22 . exon 523117 524826 . - . ID=Physo132796.1;Parent=Physo132796;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 534992 536725 . + . ID=Physo114798;biotype=protein_coding;external_name=estExt_Genewise1.C_220066;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 534992 536725 . + . ID=Physo114798;Parent=Physo114798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 534992 535951 . + . ID=Physo114798.1;Parent=Physo114798;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 535151 535951 . + 0 ID=Physo114798;Parent=Physo114798;rank=1 scaffold_22 . CDS 536018 536434 . + 0 ID=Physo114798;Parent=Physo114798;rank=2 scaffold_22 . exon 536018 536434 . + . ID=Physo114798.2;Parent=Physo114798;constitutive=1;rank=2 scaffold_22 . CDS 536513 536725 . + 0 ID=Physo114798;Parent=Physo114798;rank=3 scaffold_22 . repeat_region 543788 543831 . ? . description=trf scaffold_22 . exon 536513 536725 . + . ID=Physo114798.3;Parent=Physo114798;constitutive=1;rank=3 scaffold_22 ensembl protein_coding_gene 537919 538739 . + . ID=Physo132797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220145;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 537919 538739 . + . ID=Physo132797;Parent=Physo132797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 537919 537930 . + 0 ID=Physo132797;Parent=Physo132797;rank=1 scaffold_22 . exon 537919 537930 . + . ID=Physo132797.1;Parent=Physo132797;constitutive=1;rank=1 scaffold_22 . CDS 537979 538664 . + 0 ID=Physo132797;Parent=Physo132797;rank=2 scaffold_22 . exon 537979 538664 . + . ID=Physo132797.2;Parent=Physo132797;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 538733 538739 . + 0 ID=Physo132797;Parent=Physo132797;rank=3 scaffold_22 . exon 538733 538739 . + . ID=Physo132797.3;Parent=Physo132797;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . biological_region 547049 547052 0.999 + . logic_name=eponine scaffold_22 . biological_region 547145 547147 0.999 - . logic_name=eponine scaffold_22 . biological_region 547183 547187 0.999 - . logic_name=eponine scaffold_22 . biological_region 547280 547283 0.999 + . logic_name=eponine scaffold_22 . biological_region 547307 547313 0.999 + . logic_name=eponine scaffold_22 . repeat_region 547716 550041 . + . description=GypsyPi-1c_I-int scaffold_22 . repeat_region 551882 552100 . + . description=GypsyPi-1c_I-int scaffold_22 . biological_region 552717 552720 0.999 - . logic_name=eponine scaffold_22 . biological_region 553247 553251 0.999 + . logic_name=eponine scaffold_22 . biological_region 553265 553271 0.999 + . logic_name=eponine scaffold_22 . biological_region 553294 553295 0.999 + . logic_name=eponine scaffold_22 . biological_region 553365 553367 0.999 - . logic_name=eponine scaffold_22 . biological_region 553383 553387 0.999 - . logic_name=eponine scaffold_22 . biological_region 555215 555219 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 547347 550118 . + . ID=Physo132798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220146;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 547347 550118 . + . ID=Physo132798;Parent=Physo132798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 547347 547426 . + 0 ID=Physo132798;Parent=Physo132798;rank=1 scaffold_22 . exon 547347 547426 . + . ID=Physo132798.1;Parent=Physo132798;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 547647 549298 . + 0 ID=Physo132798;Parent=Physo132798;rank=2 scaffold_22 . exon 547647 549298 . + . ID=Physo132798.2;Parent=Physo132798;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 549319 549491 . + 0 ID=Physo132798;Parent=Physo132798;rank=3 scaffold_22 . exon 549319 549491 . + . ID=Physo132798.3;Parent=Physo132798;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 549551 550034 . + 0 ID=Physo132798;Parent=Physo132798;rank=4 scaffold_22 . exon 549551 550034 . + . ID=Physo132798.4;Parent=Physo132798;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_22 . CDS 550114 550118 . + 0 ID=Physo132798;Parent=Physo132798;rank=5 scaffold_22 . exon 550114 550118 . + . ID=Physo132798.5;Parent=Physo132798;constitutive=1;ensembl_phase=1;rank=5 scaffold_22 ensembl protein_coding_gene 552117 553631 . - . ID=Physo132799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220147;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 552117 553631 . - . ID=Physo132799;Parent=Physo132799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 552117 552305 . - 0 ID=Physo132799;Parent=Physo132799;rank=5 scaffold_22 . exon 552117 552305 . - . ID=Physo132799.5;Parent=Physo132799;constitutive=1;rank=5 scaffold_22 . CDS 552376 552432 . - 0 ID=Physo132799;Parent=Physo132799;rank=4 scaffold_22 . exon 552376 552432 . - . ID=Physo132799.4;Parent=Physo132799;constitutive=1;rank=4 scaffold_22 . CDS 552606 552960 . - 0 ID=Physo132799;Parent=Physo132799;rank=3 scaffold_22 . exon 552606 552960 . - . ID=Physo132799.3;Parent=Physo132799;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 553135 553213 . - 0 ID=Physo132799;Parent=Physo132799;rank=2 scaffold_22 . exon 553135 553213 . - . ID=Physo132799.2;Parent=Physo132799;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_22 . CDS 553256 553631 . - 0 ID=Physo132799;Parent=Physo132799;rank=1 scaffold_22 . exon 553256 553631 . - . ID=Physo132799.1;Parent=Physo132799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . repeat_region 563106 564326 . ? . description=dust scaffold_22 ensembl protein_coding_gene 557489 559387 . - . ID=Physo132800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220148;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 557489 559387 . - . ID=Physo132800;Parent=Physo132800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 557489 558232 . - 0 ID=Physo132800;Parent=Physo132800;rank=3 scaffold_22 . exon 557489 558232 . - . ID=Physo132800.3;Parent=Physo132800;constitutive=1;rank=3 scaffold_22 . CDS 558367 558944 . - 0 ID=Physo132800;Parent=Physo132800;rank=2 scaffold_22 . exon 558367 558944 . - . ID=Physo132800.2;Parent=Physo132800;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 559099 559387 . - 0 ID=Physo132800;Parent=Physo132800;rank=1 scaffold_22 . exon 559099 559387 . - . ID=Physo132800.1;Parent=Physo132800;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 ensembl protein_coding_gene 561003 562886 . - . ID=Physo132801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220149;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 561003 562886 . - . ID=Physo132801;Parent=Physo132801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 561003 562886 . - 0 ID=Physo132801;Parent=Physo132801;rank=1 scaffold_22 . exon 561003 562886 . - . ID=Physo132801.1;Parent=Physo132801;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 564690 567075 . - . ID=Physo132802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220150;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 564690 567075 . - . ID=Physo132802;Parent=Physo132802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 564690 564701 . - 0 ID=Physo132802;Parent=Physo132802;rank=7 scaffold_22 . exon 564690 564701 . - . ID=Physo132802.7;Parent=Physo132802;constitutive=1;rank=7 scaffold_22 . CDS 564822 564962 . - 0 ID=Physo132802;Parent=Physo132802;rank=6 scaffold_22 . exon 564822 564962 . - . ID=Physo132802.6;Parent=Physo132802;constitutive=1;rank=6 scaffold_22 . CDS 565028 565105 . - 0 ID=Physo132802;Parent=Physo132802;rank=5 scaffold_22 . exon 565028 565105 . - . ID=Physo132802.5;Parent=Physo132802;constitutive=1;rank=5 scaffold_22 . CDS 565218 565493 . - 0 ID=Physo132802;Parent=Physo132802;rank=4 scaffold_22 . exon 565218 565493 . - . ID=Physo132802.4;Parent=Physo132802;constitutive=1;rank=4 scaffold_22 . CDS 565725 565913 . - 0 ID=Physo132802;Parent=Physo132802;rank=3 scaffold_22 . exon 565725 565913 . - . ID=Physo132802.3;Parent=Physo132802;constitutive=1;rank=3 scaffold_22 . CDS 566412 566559 . - 0 ID=Physo132802;Parent=Physo132802;rank=2 scaffold_22 . CDS 566627 567075 . - 0 ID=Physo132802;Parent=Physo132802;rank=1 scaffold_22 . biological_region 567047 567050 0.999 - . logic_name=eponine scaffold_22 . biological_region 567486 567490 0.999 - . logic_name=eponine scaffold_22 . repeat_region 567899 567926 . ? . description=trf scaffold_22 . biological_region 568110 568118 0.999 + . logic_name=eponine scaffold_22 . biological_region 568760 568764 0.999 + . logic_name=eponine scaffold_22 . biological_region 572026 572026 0.999 - . logic_name=eponine scaffold_22 . biological_region 572346 572352 0.999 - . logic_name=eponine scaffold_22 . biological_region 572474 572476 0.999 + . logic_name=eponine scaffold_22 . exon 566412 566559 . - . ID=Physo132802.2;Parent=Physo132802;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . exon 566627 567075 . - . ID=Physo132802.1;Parent=Physo132802;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 567853 569802 . + . ID=Physo132803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220151;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 567853 569802 . + . ID=Physo132803;Parent=Physo132803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 567853 569802 . + 0 ID=Physo132803;Parent=Physo132803;rank=1 scaffold_22 . exon 567853 569802 . + . ID=Physo132803.1;Parent=Physo132803;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 569912 572658 . - . ID=Physo132804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220152;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 569912 572658 . - . ID=Physo132804;Parent=Physo132804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 569912 572155 . - 0 ID=Physo132804;Parent=Physo132804;rank=2 scaffold_22 . exon 569912 572155 . - . ID=Physo132804.2;Parent=Physo132804;constitutive=1;rank=2 scaffold_22 . CDS 572227 572658 . - 0 ID=Physo132804;Parent=Physo132804;rank=1 scaffold_22 . exon 572227 572658 . - . ID=Physo132804.1;Parent=Physo132804;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 573623 574134 . + . ID=Physo132805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220153;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 573623 574134 . + . ID=Physo132805;Parent=Physo132805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 573623 574035 . + 0 ID=Physo132805;Parent=Physo132805;rank=1 scaffold_22 . exon 573623 574035 . + . ID=Physo132805.1;Parent=Physo132805;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 574059 574134 . + 0 ID=Physo132805;Parent=Physo132805;rank=2 scaffold_22 . exon 574059 574134 . + . ID=Physo132805.2;Parent=Physo132805;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 574263 577517 . - . ID=Physo132806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220154;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 574263 577517 . - . ID=Physo132806;Parent=Physo132806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 574263 577517 . - 0 ID=Physo132806;Parent=Physo132806;rank=1 scaffold_22 . exon 574263 577517 . - . ID=Physo132806.1;Parent=Physo132806;constitutive=1;rank=1 scaffold_22 . repeat_region 582304 582367 . ? . description=dust scaffold_22 . repeat_region 583877 583886 . ? . description=dust scaffold_22 ensembl protein_coding_gene 578816 581656 . + . ID=Physo132807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220155;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 578816 581656 . + . ID=Physo132807;Parent=Physo132807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 578816 581656 . + 0 ID=Physo132807;Parent=Physo132807;rank=1 scaffold_22 . exon 578816 581656 . + . ID=Physo132807.1;Parent=Physo132807;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 581959 583830 . - . ID=Physo132808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220156;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 581959 583830 . - . ID=Physo132808;Parent=Physo132808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 581959 583657 . - . ID=Physo132808.2;Parent=Physo132808;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_22 . CDS 582280 583657 . - 0 ID=Physo132808;Parent=Physo132808;rank=2 scaffold_22 . CDS 583754 583830 . - 0 ID=Physo132808;Parent=Physo132808;rank=1 scaffold_22 . exon 583754 583830 . - . ID=Physo132808.1;Parent=Physo132808;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . biological_region 587754 587758 0.999 - . logic_name=eponine scaffold_22 . biological_region 589124 589126 0.999 + . logic_name=eponine scaffold_22 . biological_region 589288 589289 0.999 + . logic_name=eponine scaffold_22 . biological_region 590301 590302 0.999 - . logic_name=eponine scaffold_22 . biological_region 590498 590503 0.999 + . logic_name=eponine scaffold_22 . biological_region 592931 592938 0.999 - . logic_name=eponine scaffold_22 . biological_region 594958 594959 0.999 + . logic_name=eponine scaffold_22 . biological_region 595083 595087 0.999 + . logic_name=eponine scaffold_22 . repeat_region 595499 596256 . ? . description=trf scaffold_22 ensembl protein_coding_gene 586257 589607 . + . ID=Physo132809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220157;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 586257 589607 . + . ID=Physo132809;Parent=Physo132809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 586257 589607 . + 0 ID=Physo132809;Parent=Physo132809;rank=1 scaffold_22 . exon 586257 589607 . + . ID=Physo132809.1;Parent=Physo132809;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 589966 592269 . - . ID=Physo132810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220158;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 589966 592269 . - . ID=Physo132810;Parent=Physo132810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 589966 592269 . - 0 ID=Physo132810;Parent=Physo132810;rank=1 scaffold_22 . exon 589966 592269 . - . ID=Physo132810.1;Parent=Physo132810;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 593260 597015 . - . ID=Physo132811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220159;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 593260 597015 . - . ID=Physo132811;Parent=Physo132811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 593260 593614 . - 0 ID=Physo132811;Parent=Physo132811;rank=3 scaffold_22 . exon 593260 593614 . - . ID=Physo132811.3;Parent=Physo132811;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 593689 594171 . - 0 ID=Physo132811;Parent=Physo132811;rank=2 scaffold_22 . exon 593689 594171 . - . ID=Physo132811.2;Parent=Physo132811;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 594242 597015 . - 0 ID=Physo132811;Parent=Physo132811;rank=1 scaffold_22 . exon 594242 597015 . - . ID=Physo132811.1;Parent=Physo132811;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . repeat_region 598598 598627 . ? . description=dust scaffold_22 . repeat_region 600105 600112 . ? . description=dust scaffold_22 . repeat_region 600605 600617 . ? . description=dust scaffold_22 ensembl protein_coding_gene 601278 602184 . - . ID=Physo132812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220160;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 601278 602184 . - . ID=Physo132812;Parent=Physo132812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 601278 601449 . - 0 ID=Physo132812;Parent=Physo132812;rank=3 scaffold_22 . exon 601278 601449 . - . ID=Physo132812.3;Parent=Physo132812;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 601642 601785 . - 0 ID=Physo132812;Parent=Physo132812;rank=2 scaffold_22 . exon 601642 601785 . - . ID=Physo132812.2;Parent=Physo132812;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 602171 602184 . - 0 ID=Physo132812;Parent=Physo132812;rank=1 scaffold_22 . exon 602171 602184 . - . ID=Physo132812.1;Parent=Physo132812;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 602827 606234 . + . ID=Physo132813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220161;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 602827 606234 . + . ID=Physo132813;Parent=Physo132813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 602827 606234 . + 0 ID=Physo132813;Parent=Physo132813;rank=1 scaffold_22 . exon 602827 606234 . + . ID=Physo132813.1;Parent=Physo132813;constitutive=1;rank=1 scaffold_22 . biological_region 605754 605756 0.999 + . logic_name=eponine scaffold_22 . biological_region 605918 605919 0.999 + . logic_name=eponine scaffold_22 . biological_region 606498 606501 0.999 + . logic_name=eponine scaffold_22 . biological_region 606534 606538 0.999 + . logic_name=eponine scaffold_22 . biological_region 606642 606645 0.999 - . logic_name=eponine scaffold_22 . biological_region 611973 611975 0.999 - . logic_name=eponine scaffold_22 . repeat_region 612544 612862 . ? . description=trf scaffold_22 . repeat_region 612556 612710 . ? . description=trf scaffold_22 . biological_region 612813 612818 0.999 + . logic_name=eponine scaffold_22 . biological_region 613049 613051 0.999 + . logic_name=eponine scaffold_22 . repeat_region 613130 613210 . ? . description=trf scaffold_22 . repeat_region 613599 615544 . ? . description=trf scaffold_22 . biological_region 615472 615476 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 606430 608413 . + . ID=Physo132814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220162;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 606430 608413 . + . ID=Physo132814;Parent=Physo132814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 606430 608329 . + 0 ID=Physo132814;Parent=Physo132814;rank=1 scaffold_22 . exon 606430 608329 . + . ID=Physo132814.1;Parent=Physo132814;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 608394 608413 . + 0 ID=Physo132814;Parent=Physo132814;rank=2 scaffold_22 . exon 608394 608413 . + . ID=Physo132814.2;Parent=Physo132814;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 ensembl protein_coding_gene 610546 611293 . + . ID=Physo132815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220163;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 610546 611293 . + . ID=Physo132815;Parent=Physo132815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 610546 610707 . + 0 ID=Physo132815;Parent=Physo132815;rank=1 scaffold_22 . exon 610546 610707 . + . ID=Physo132815.1;Parent=Physo132815;constitutive=1;rank=1 scaffold_22 . CDS 610781 610966 . + 0 ID=Physo132815;Parent=Physo132815;rank=2 scaffold_22 . exon 610781 610966 . + . ID=Physo132815.2;Parent=Physo132815;constitutive=1;rank=2 scaffold_22 . CDS 611042 611293 . + 0 ID=Physo132815;Parent=Physo132815;rank=3 scaffold_22 . exon 611042 611293 . + . ID=Physo132815.3;Parent=Physo132815;constitutive=1;rank=3 scaffold_22 ensembl protein_coding_gene 611847 618080 . + . ID=Physo132816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220164;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 611847 618080 . + . ID=Physo132816;Parent=Physo132816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 611847 618080 . + 0 ID=Physo132816;Parent=Physo132816;rank=1 scaffold_22 . exon 611847 618080 . + . ID=Physo132816.1;Parent=Physo132816;constitutive=1;rank=1 scaffold_22 . repeat_region 619389 619412 . ? . description=dust scaffold_22 ensembl protein_coding_gene 618536 620364 . - . ID=Physo132817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220165;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 618536 620364 . - . ID=Physo132817;Parent=Physo132817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 618536 619198 . - . ID=Physo132817.2;Parent=Physo132817;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_22 . CDS 618890 619198 . - 0 ID=Physo132817;Parent=Physo132817;rank=2 scaffold_22 . CDS 619432 620364 . - 0 ID=Physo132817;Parent=Physo132817;rank=1 scaffold_22 . exon 619432 620364 . - . ID=Physo132817.1;Parent=Physo132817;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 621711 622612 . + . ID=Physo132818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220166;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 621711 622612 . + . ID=Physo132818;Parent=Physo132818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 621711 621767 . + 0 ID=Physo132818;Parent=Physo132818;rank=1 scaffold_22 . exon 621711 621767 . + . ID=Physo132818.1;Parent=Physo132818;constitutive=1;rank=1 scaffold_22 . CDS 621847 622354 . + 0 ID=Physo132818;Parent=Physo132818;rank=2 scaffold_22 . exon 621847 622354 . + . ID=Physo132818.2;Parent=Physo132818;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 622422 622501 . + 0 ID=Physo132818;Parent=Physo132818;rank=3 scaffold_22 . exon 622422 622501 . + . ID=Physo132818.3;Parent=Physo132818;constitutive=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 622586 622612 . + 0 ID=Physo132818;Parent=Physo132818;rank=4 scaffold_22 . exon 622586 622612 . + . ID=Physo132818.4;Parent=Physo132818;constitutive=1;rank=4 scaffold_22 ensembl protein_coding_gene 624092 626479 . - . ID=Physo132819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220167;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 624092 626479 . - . ID=Physo132819;Parent=Physo132819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 624092 626479 . - 0 ID=Physo132819;Parent=Physo132819;rank=1 scaffold_22 . exon 624092 626479 . - . ID=Physo132819.1;Parent=Physo132819;constitutive=1;rank=1 scaffold_22 . biological_region 627716 627722 0.999 + . logic_name=eponine scaffold_22 . biological_region 628047 628050 0.999 + . logic_name=eponine scaffold_22 . repeat_region 628058 628119 . ? . description=trf scaffold_22 . biological_region 628071 628078 0.999 + . logic_name=eponine scaffold_22 . biological_region 628078 628081 0.999 - . logic_name=eponine scaffold_22 . biological_region 628173 628176 0.999 - . logic_name=eponine scaffold_22 . biological_region 628202 628206 0.999 - . logic_name=eponine scaffold_22 . biological_region 628644 628644 0.999 + . logic_name=eponine scaffold_22 . biological_region 628679 628682 0.999 + . logic_name=eponine scaffold_22 . biological_region 628693 628696 0.999 - . logic_name=eponine scaffold_22 . repeat_region 629718 629772 . ? . description=trf scaffold_22 . biological_region 629745 629745 0.999 + . logic_name=eponine scaffold_22 . biological_region 629757 629761 0.999 - . logic_name=eponine scaffold_22 . biological_region 629818 629820 0.999 - . logic_name=eponine scaffold_22 . biological_region 629969 629971 0.999 - . logic_name=eponine scaffold_22 . biological_region 631177 631181 0.999 - . logic_name=eponine scaffold_22 . repeat_region 631398 631451 . ? . description=trf scaffold_22 . biological_region 632481 632490 0.999 + . logic_name=eponine scaffold_22 . biological_region 632599 632601 0.999 - . logic_name=eponine scaffold_22 . biological_region 633036 633039 0.999 - . logic_name=eponine scaffold_22 . biological_region 633652 633654 0.999 + . logic_name=eponine scaffold_22 . biological_region 633662 633664 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 628983 630282 . + . ID=Physo132820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220168;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 628983 630282 . + . ID=Physo132820;Parent=Physo132820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 628983 630239 . + 0 ID=Physo132820;Parent=Physo132820;rank=1 scaffold_22 . exon 628983 630239 . + . ID=Physo132820.1;Parent=Physo132820;constitutive=1;rank=1 scaffold_22 . CDS 630268 630282 . + 0 ID=Physo132820;Parent=Physo132820;rank=2 scaffold_22 . exon 630268 630282 . + . ID=Physo132820.2;Parent=Physo132820;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 630514 631470 . - . ID=Physo132821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220169;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 630514 631470 . - . ID=Physo132821;Parent=Physo132821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 630514 630913 . - 0 ID=Physo132821;Parent=Physo132821;rank=2 scaffold_22 . exon 630514 630913 . - . ID=Physo132821.2;Parent=Physo132821;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 630983 631470 . - 0 ID=Physo132821;Parent=Physo132821;rank=1 scaffold_22 . exon 630983 631470 . - . ID=Physo132821.1;Parent=Physo132821;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 633191 633895 . + . ID=Physo132822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220170;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 633191 633895 . + . ID=Physo132822;Parent=Physo132822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 633191 633895 . + 0 ID=Physo132822;Parent=Physo132822;rank=1 scaffold_22 . exon 633191 633895 . + . ID=Physo132822.1;Parent=Physo132822;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 634761 636455 . + . ID=Physo132823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220171;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 634761 636455 . + . ID=Physo132823;Parent=Physo132823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 634761 634895 . + 0 ID=Physo132823;Parent=Physo132823;rank=1 scaffold_22 . exon 634761 634895 . + . ID=Physo132823.1;Parent=Physo132823;constitutive=1;rank=1 scaffold_22 . CDS 634920 635788 . + 0 ID=Physo132823;Parent=Physo132823;rank=2 scaffold_22 . exon 634920 635788 . + . ID=Physo132823.2;Parent=Physo132823;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 635981 636455 . + 0 ID=Physo132823;Parent=Physo132823;rank=3 scaffold_22 . exon 635981 636455 . + . ID=Physo132823.3;Parent=Physo132823;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 ensembl protein_coding_gene 637419 639972 . - . ID=Physo132824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220172;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 637419 639972 . - . ID=Physo132824;Parent=Physo132824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 637419 637705 . - 0 ID=Physo132824;Parent=Physo132824;rank=6 scaffold_22 . exon 637419 637705 . - . ID=Physo132824.6;Parent=Physo132824;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 637823 638335 . - 0 ID=Physo132824;Parent=Physo132824;rank=5 scaffold_22 . exon 637823 638335 . - . ID=Physo132824.5;Parent=Physo132824;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 638374 638945 . - 0 ID=Physo132824;Parent=Physo132824;rank=4 scaffold_22 . exon 638374 638945 . - . ID=Physo132824.4;Parent=Physo132824;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 639092 639342 . - 0 ID=Physo132824;Parent=Physo132824;rank=3 scaffold_22 . exon 639092 639342 . - . ID=Physo132824.3;Parent=Physo132824;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_22 . CDS 639400 639628 . - 0 ID=Physo132824;Parent=Physo132824;rank=2 scaffold_22 . exon 639400 639628 . - . ID=Physo132824.2;Parent=Physo132824;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 639737 639972 . - 0 ID=Physo132824;Parent=Physo132824;rank=1 scaffold_22 . exon 639737 639972 . - . ID=Physo132824.1;Parent=Physo132824;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 643499 644117 . - . ID=Physo132825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220173;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 643499 644117 . - . ID=Physo132825;Parent=Physo132825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 643499 643653 . - 0 ID=Physo132825;Parent=Physo132825;rank=2 scaffold_22 . exon 643499 643653 . - . ID=Physo132825.2;Parent=Physo132825;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 643688 644117 . - 0 ID=Physo132825;Parent=Physo132825;rank=1 scaffold_22 . exon 643688 644117 . - . ID=Physo132825.1;Parent=Physo132825;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . repeat_region 647090 647098 . ? . description=dust scaffold_22 ensembl protein_coding_gene 652378 654960 . - . ID=Physo132826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220174;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 652378 654960 . - . ID=Physo132826;Parent=Physo132826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 652378 654960 . - . ID=Physo132826.1;Parent=Physo132826;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_22 . CDS 652612 654960 . - 0 ID=Physo132826;Parent=Physo132826;rank=1 scaffold_22 . biological_region 658495 658502 0.999 + . logic_name=eponine scaffold_22 . repeat_region 658522 658541 . ? . description=trf scaffold_22 . biological_region 658586 658591 0.999 + . logic_name=eponine scaffold_22 . biological_region 659795 659806 0.999 + . logic_name=eponine scaffold_22 . biological_region 660463 660464 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 658459 660802 . - . ID=Physo132827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220175;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 658459 660802 . - . ID=Physo132827;Parent=Physo132827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 658459 658633 . - 0 ID=Physo132827;Parent=Physo132827;rank=5 scaffold_22 . exon 658459 658633 . - . ID=Physo132827.5;Parent=Physo132827;constitutive=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 658736 659019 . - 0 ID=Physo132827;Parent=Physo132827;rank=4 scaffold_22 . exon 658736 659019 . - . ID=Physo132827.4;Parent=Physo132827;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 659044 659284 . - 0 ID=Physo132827;Parent=Physo132827;rank=3 scaffold_22 . exon 659044 659284 . - . ID=Physo132827.3;Parent=Physo132827;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 659391 660532 . - 0 ID=Physo132827;Parent=Physo132827;rank=2 scaffold_22 . exon 659391 660532 . - . ID=Physo132827.2;Parent=Physo132827;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 660626 660802 . - 0 ID=Physo132827;Parent=Physo132827;rank=1 scaffold_22 . exon 660626 660802 . - . ID=Physo132827.1;Parent=Physo132827;constitutive=1;rank=1 scaffold_22 . repeat_region 672730 672760 . ? . description=dust scaffold_22 . repeat_region 672834 672853 . ? . description=dust scaffold_22 . repeat_region 674001 674015 . ? . description=dust scaffold_22 ensembl protein_coding_gene 670941 671715 . - . ID=Physo132828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220176;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 670941 671715 . - . ID=Physo132828;Parent=Physo132828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 670941 671347 . - 0 ID=Physo132828;Parent=Physo132828;rank=2 scaffold_22 . exon 670941 671347 . - . ID=Physo132828.2;Parent=Physo132828;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 671637 671715 . - 0 ID=Physo132828;Parent=Physo132828;rank=1 scaffold_22 . exon 671637 671715 . - . ID=Physo132828.1;Parent=Physo132828;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . repeat_region 677314 677369 . ? . description=trf scaffold_22 . repeat_region 678894 678951 . ? . description=trf scaffold_22 . repeat_region 679114 679177 . ? . description=trf scaffold_22 . repeat_region 679115 679237 . ? . description=trf scaffold_22 . biological_region 680231 680232 0.999 - . logic_name=eponine scaffold_22 . biological_region 680270 680275 0.999 - . logic_name=eponine scaffold_22 . biological_region 680286 680287 0.999 + . logic_name=eponine scaffold_22 . biological_region 681184 681185 0.999 + . logic_name=eponine scaffold_22 . biological_region 681543 681548 0.999 + . logic_name=eponine scaffold_22 . biological_region 681844 681847 0.999 - . logic_name=eponine scaffold_22 . biological_region 682569 682574 0.999 - . logic_name=eponine scaffold_22 . biological_region 682860 682863 0.999 + . logic_name=eponine scaffold_22 . biological_region 682919 682924 0.999 + . logic_name=eponine scaffold_22 . biological_region 682929 682932 0.999 + . logic_name=eponine scaffold_22 . biological_region 682974 682980 0.999 + . logic_name=eponine scaffold_22 . biological_region 683038 683040 0.999 - . logic_name=eponine scaffold_22 . biological_region 683650 683653 0.999 - . logic_name=eponine scaffold_22 . biological_region 683705 683708 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 679069 679419 . + . ID=Physo132829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220177;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 679069 679419 . + . ID=Physo132829;Parent=Physo132829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 679069 679419 . + 0 ID=Physo132829;Parent=Physo132829;rank=1 scaffold_22 . exon 679069 679419 . + . ID=Physo132829.1;Parent=Physo132829;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 679799 683010 . - . ID=Physo132830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220178;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 679799 683010 . - . ID=Physo132830;Parent=Physo132830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 679799 682384 . - . ID=Physo132830.3;Parent=Physo132830;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_22 . CDS 679856 682384 . - 0 ID=Physo132830;Parent=Physo132830;rank=2 scaffold_22 . CDS 682526 682894 . - 0 ID=Physo132830;Parent=Physo132830;rank=1 scaffold_22 . exon 682526 682902 . - . ID=Physo132830.2;Parent=Physo132830;constitutive=1;ensembl_phase=-1;rank=2 scaffold_22 . exon 682979 683010 . - . ID=Physo132830.1;Parent=Physo132830;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 684690 689297 . - . ID=Physo132831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220179;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 684690 689297 . - . ID=Physo132831;Parent=Physo132831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 684690 687347 . - 0 ID=Physo132831;Parent=Physo132831;rank=9 scaffold_22 . exon 684690 687347 . - . ID=Physo132831.10;Parent=Physo132831;constitutive=1;rank=10 scaffold_22 . CDS 687376 687492 . - 0 ID=Physo132831;Parent=Physo132831;rank=8 scaffold_22 . CDS 687633 687645 . - 0 ID=Physo132831;Parent=Physo132831;rank=7 scaffold_22 . CDS 687696 687863 . - 0 ID=Physo132831;Parent=Physo132831;rank=6 scaffold_22 . CDS 687898 688020 . - 0 ID=Physo132831;Parent=Physo132831;rank=5 scaffold_22 . CDS 688096 688288 . - 0 ID=Physo132831;Parent=Physo132831;rank=4 scaffold_22 . CDS 688487 688619 . - 0 ID=Physo132831;Parent=Physo132831;rank=3 scaffold_22 . CDS 688694 688817 . - 0 ID=Physo132831;Parent=Physo132831;rank=2 scaffold_22 . CDS 688895 689037 . - 0 ID=Physo132831;Parent=Physo132831;rank=1 scaffold_22 . repeat_region 687367 687430 . ? . description=dust scaffold_22 . exon 687376 687492 . - . ID=Physo132831.9;Parent=Physo132831;constitutive=1;rank=9 scaffold_22 . exon 687633 687645 . - . ID=Physo132831.8;Parent=Physo132831;constitutive=1;ensembl_phase=2;rank=8 scaffold_22 . exon 687696 687863 . - . ID=Physo132831.7;Parent=Physo132831;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_22 . exon 687898 688020 . - . ID=Physo132831.6;Parent=Physo132831;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_22 . exon 688096 688288 . - . ID=Physo132831.5;Parent=Physo132831;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_22 . exon 688487 688619 . - . ID=Physo132831.4;Parent=Physo132831;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_22 . exon 688694 688817 . - . ID=Physo132831.3;Parent=Physo132831;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . exon 688895 689056 . - . ID=Physo132831.2;Parent=Physo132831;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_22 . exon 689123 689297 . - . ID=Physo132831.1;Parent=Physo132831;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_22 . biological_region 700087 700087 0.999 + . logic_name=eponine scaffold_22 . biological_region 700110 700111 0.999 + . logic_name=eponine scaffold_22 . biological_region 700184 700186 0.999 - . logic_name=eponine scaffold_22 . biological_region 703537 703542 0.999 + . logic_name=eponine scaffold_22 . biological_region 703560 703563 0.999 - . logic_name=eponine scaffold_22 . biological_region 704301 704302 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 701112 704609 . + . ID=Physo132832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220180;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 701112 704609 . + . ID=Physo132832;Parent=Physo132832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 701112 704609 . + 0 ID=Physo132832;Parent=Physo132832;rank=1 scaffold_22 . exon 701112 704609 . + . ID=Physo132832.1;Parent=Physo132832;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 704704 706071 . - . ID=Physo132833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220181;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 704704 706071 . - . ID=Physo132833;Parent=Physo132833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 704704 706071 . - 0 ID=Physo132833;Parent=Physo132833;rank=1 scaffold_22 . exon 704704 706071 . - . ID=Physo132833.1;Parent=Physo132833;constitutive=1;rank=1 scaffold_22 . repeat_region 705543 705566 . ? . description=trf scaffold_22 . repeat_region 705575 705606 . ? . description=trf scaffold_22 . repeat_region 705578 705606 . ? . description=trf scaffold_22 . repeat_region 707162 707191 . ? . description=trf scaffold_22 . repeat_region 707525 707532 . ? . description=dust scaffold_22 ensembl protein_coding_gene 707647 709743 . + . ID=Physo132834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220182;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 707647 709743 . + . ID=Physo132834;Parent=Physo132834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 707647 707922 . + 0 ID=Physo132834;Parent=Physo132834;rank=1 scaffold_22 . exon 707647 707922 . + . ID=Physo132834.1;Parent=Physo132834;constitutive=1;rank=1 scaffold_22 . CDS 707977 709296 . + 0 ID=Physo132834;Parent=Physo132834;rank=2 scaffold_22 . exon 707977 709296 . + . ID=Physo132834.2;Parent=Physo132834;constitutive=1;rank=2 scaffold_22 . CDS 709327 709743 . + 0 ID=Physo132834;Parent=Physo132834;rank=3 scaffold_22 . exon 709327 709743 . + . ID=Physo132834.3;Parent=Physo132834;constitutive=1;rank=3 scaffold_22 ensembl protein_coding_gene 709896 712118 . - . ID=Physo132835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220183;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 709896 712118 . - . ID=Physo132835;Parent=Physo132835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 709896 710580 . - 0 ID=Physo132835;Parent=Physo132835;rank=2 scaffold_22 . exon 709896 710580 . - . ID=Physo132835.2;Parent=Physo132835;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 . CDS 711016 712118 . - 0 ID=Physo132835;Parent=Physo132835;rank=1 scaffold_22 . exon 711016 712118 . - . ID=Physo132835.1;Parent=Physo132835;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 ensembl protein_coding_gene 712357 714228 . - . ID=Physo132836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220184;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 712357 714228 . - . ID=Physo132836;Parent=Physo132836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 712357 714228 . - 0 ID=Physo132836;Parent=Physo132836;rank=1 scaffold_22 . exon 712357 714228 . - . ID=Physo132836.1;Parent=Physo132836;constitutive=1;rank=1 scaffold_22 . biological_region 717220 717223 0.999 + . logic_name=eponine scaffold_22 . biological_region 718145 718146 0.999 + . logic_name=eponine scaffold_22 . biological_region 719338 719339 0.999 + . logic_name=eponine scaffold_22 . biological_region 719404 719410 0.999 - . logic_name=eponine scaffold_22 . repeat_region 720998 721179 . + . description=(CGA)n scaffold_22 . biological_region 721209 721211 0.999 - . logic_name=eponine scaffold_22 . biological_region 721225 721226 0.999 + . logic_name=eponine scaffold_22 . biological_region 721386 721390 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 718076 719073 . + . ID=Physo114812;biotype=protein_coding;external_name=estExt_Genewise1.C_220080;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 718076 719073 . + . ID=Physo114812;Parent=Physo114812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 718076 718120 . + . ID=Physo114812.1;Parent=Physo114812;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 718118 718120 . + 0 ID=Physo114812;Parent=Physo114812;rank=1 scaffold_22 . CDS 718433 718568 . + 0 ID=Physo114812;Parent=Physo114812;rank=2 scaffold_22 . exon 718433 718568 . + . ID=Physo114812.2;Parent=Physo114812;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 718667 718806 . + 0 ID=Physo114812;Parent=Physo114812;rank=3 scaffold_22 . exon 718667 719073 . + . ID=Physo114812.3;Parent=Physo114812;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_22 ensembl protein_coding_gene 715336 717575 . + . ID=Physo132837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220185;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 715336 717575 . + . ID=Physo132837;Parent=Physo132837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 715336 715422 . + 0 ID=Physo132837;Parent=Physo132837;rank=1 scaffold_22 . exon 715336 715422 . + . ID=Physo132837.1;Parent=Physo132837;constitutive=1;rank=1 scaffold_22 . CDS 715509 715639 . + 0 ID=Physo132837;Parent=Physo132837;rank=2 scaffold_22 . exon 715509 715639 . + . ID=Physo132837.2;Parent=Physo132837;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 715721 716777 . + 0 ID=Physo132837;Parent=Physo132837;rank=3 scaffold_22 . exon 715721 716777 . + . ID=Physo132837.3;Parent=Physo132837;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 716848 716909 . + 0 ID=Physo132837;Parent=Physo132837;rank=4 scaffold_22 . exon 716848 716909 . + . ID=Physo132837.4;Parent=Physo132837;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_22 . CDS 716997 717052 . + 0 ID=Physo132837;Parent=Physo132837;rank=5 scaffold_22 . exon 716997 717052 . + . ID=Physo132837.5;Parent=Physo132837;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_22 . CDS 717142 717575 . + 0 ID=Physo132837;Parent=Physo132837;rank=6 scaffold_22 . exon 717142 717575 . + . ID=Physo132837.6;Parent=Physo132837;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 ensembl protein_coding_gene 719121 720313 . - . ID=Physo132838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220186;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 719121 720313 . - . ID=Physo132838;Parent=Physo132838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 719121 719586 . - 0 ID=Physo132838;Parent=Physo132838;rank=4 scaffold_22 . exon 719121 719586 . - . ID=Physo132838.4;Parent=Physo132838;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 719661 719854 . - 0 ID=Physo132838;Parent=Physo132838;rank=3 scaffold_22 . exon 719661 719854 . - . ID=Physo132838.3;Parent=Physo132838;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_22 . CDS 719930 720067 . - 0 ID=Physo132838;Parent=Physo132838;rank=2 scaffold_22 . exon 719930 720067 . - . ID=Physo132838.2;Parent=Physo132838;constitutive=1;rank=2 scaffold_22 . CDS 720149 720313 . - 0 ID=Physo132838;Parent=Physo132838;rank=1 scaffold_22 . exon 720149 720313 . - . ID=Physo132838.1;Parent=Physo132838;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 720765 721465 . + . ID=Physo132839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220187;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 720765 721465 . + . ID=Physo132839;Parent=Physo132839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 720765 720796 . + 0 ID=Physo132839;Parent=Physo132839;rank=1 scaffold_22 . exon 720765 720796 . + . ID=Physo132839.1;Parent=Physo132839;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 720892 721396 . + 0 ID=Physo132839;Parent=Physo132839;rank=2 scaffold_22 . exon 720892 721465 . + . ID=Physo132839.2;Parent=Physo132839;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 721625 722946 . - . ID=Physo132840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220188;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 721625 722946 . - . ID=Physo132840;Parent=Physo132840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 721625 721726 . - 0 ID=Physo132840;Parent=Physo132840;rank=4 scaffold_22 . exon 721625 721726 . - . ID=Physo132840.4;Parent=Physo132840;constitutive=1;rank=4 scaffold_22 . CDS 721806 721866 . - 0 ID=Physo132840;Parent=Physo132840;rank=3 scaffold_22 . exon 721806 721866 . - . ID=Physo132840.3;Parent=Physo132840;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 . CDS 721946 722088 . - 0 ID=Physo132840;Parent=Physo132840;rank=2 scaffold_22 . exon 721946 722088 . - . ID=Physo132840.2;Parent=Physo132840;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 722164 722946 . - 0 ID=Physo132840;Parent=Physo132840;rank=1 scaffold_22 . exon 722164 722946 . - . ID=Physo132840.1;Parent=Physo132840;constitutive=1;rank=1 scaffold_22 . repeat_region 724838 724898 . ? . description=dust scaffold_22 . repeat_region 724846 724906 . ? . description=trf scaffold_22 . repeat_region 724846 724916 . ? . description=trf scaffold_22 . repeat_region 725824 725831 . ? . description=dust scaffold_22 . repeat_region 726461 726468 . ? . description=dust scaffold_22 . repeat_region 727105 727112 . ? . description=dust scaffold_22 . repeat_region 727585 727592 . ? . description=dust scaffold_22 . repeat_region 728245 728252 . ? . description=dust scaffold_22 ensembl protein_coding_gene 732854 734558 . + . ID=Physo132841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220189;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 732854 734558 . + . ID=Physo132841;Parent=Physo132841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 732854 733108 . + 0 ID=Physo132841;Parent=Physo132841;rank=1 scaffold_22 . exon 732854 733108 . + . ID=Physo132841.1;Parent=Physo132841;constitutive=1;rank=1 scaffold_22 . CDS 733152 733312 . + 0 ID=Physo132841;Parent=Physo132841;rank=2 scaffold_22 . exon 733152 733312 . + . ID=Physo132841.2;Parent=Physo132841;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 733402 733926 . + 0 ID=Physo132841;Parent=Physo132841;rank=3 scaffold_22 . exon 733402 733926 . + . ID=Physo132841.3;Parent=Physo132841;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . CDS 734014 734306 . + 0 ID=Physo132841;Parent=Physo132841;rank=4 scaffold_22 . exon 734014 734306 . + . ID=Physo132841.4;Parent=Physo132841;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_22 . CDS 734374 734558 . + 0 ID=Physo132841;Parent=Physo132841;rank=5 scaffold_22 . exon 734374 734558 . + . ID=Physo132841.5;Parent=Physo132841;constitutive=1;ensembl_phase=1;rank=5 scaffold_22 . repeat_region 741297 741460 . + . description=GypsyPi-1c_I-int scaffold_22 . biological_region 742087 742091 0.999 + . logic_name=eponine scaffold_22 . biological_region 742669 742673 0.999 - . logic_name=eponine scaffold_22 . biological_region 743219 743223 0.999 + . logic_name=eponine scaffold_22 . biological_region 743331 743333 0.999 - . logic_name=eponine scaffold_22 ensembl protein_coding_gene 743218 743595 . - . ID=Physo132842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220190;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 743218 743595 . - . ID=Physo132842;Parent=Physo132842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 743218 743595 . - 0 ID=Physo132842;Parent=Physo132842;rank=1 scaffold_22 . exon 743218 743595 . - . ID=Physo132842.1;Parent=Physo132842;constitutive=1;rank=1 scaffold_22 . repeat_region 745250 745257 . ? . description=dust scaffold_22 . repeat_region 746165 746217 . ? . description=trf scaffold_22 . repeat_region 746165 746217 . ? . description=trf scaffold_22 . repeat_region 751331 751394 . ? . description=trf scaffold_22 . repeat_region 751331 751403 . ? . description=dust scaffold_22 ensembl protein_coding_gene 745879 748449 . + . ID=Physo132843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220191;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 745879 748449 . + . ID=Physo132843;Parent=Physo132843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 745879 746866 . + 0 ID=Physo132843;Parent=Physo132843;rank=1 scaffold_22 . exon 745879 746866 . + . ID=Physo132843.1;Parent=Physo132843;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . CDS 746957 747286 . + 0 ID=Physo132843;Parent=Physo132843;rank=2 scaffold_22 . exon 746957 747286 . + . ID=Physo132843.2;Parent=Physo132843;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 747677 747857 . + 0 ID=Physo132843;Parent=Physo132843;rank=3 scaffold_22 . exon 747677 747857 . + . ID=Physo132843.3;Parent=Physo132843;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_22 . CDS 747924 748265 . + 0 ID=Physo132843;Parent=Physo132843;rank=4 scaffold_22 . exon 747924 748265 . + . ID=Physo132843.4;Parent=Physo132843;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_22 . CDS 748302 748449 . + 0 ID=Physo132843;Parent=Physo132843;rank=5 scaffold_22 . exon 748302 748449 . + . ID=Physo132843.5;Parent=Physo132843;constitutive=1;ensembl_phase=2;rank=5 scaffold_22 ensembl protein_coding_gene 748662 753000 . + . ID=Physo132844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220192;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 748662 753000 . + . ID=Physo132844;Parent=Physo132844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 748662 750229 . + 0 ID=Physo132844;Parent=Physo132844;rank=1 scaffold_22 . exon 748662 750229 . + . ID=Physo132844.1;Parent=Physo132844;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 750307 750786 . + 0 ID=Physo132844;Parent=Physo132844;rank=2 scaffold_22 . exon 750307 750786 . + . ID=Physo132844.2;Parent=Physo132844;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_22 . CDS 751071 752348 . + 0 ID=Physo132844;Parent=Physo132844;rank=3 scaffold_22 . exon 751071 752348 . + . ID=Physo132844.3;Parent=Physo132844;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_22 . CDS 752427 753000 . + 0 ID=Physo132844;Parent=Physo132844;rank=4 scaffold_22 . exon 752427 753000 . + . ID=Physo132844.4;Parent=Physo132844;constitutive=1;ensembl_phase=2;rank=4 scaffold_22 ensembl protein_coding_gene 753156 755616 . - . ID=Physo132845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220193;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 753156 755616 . - . ID=Physo132845;Parent=Physo132845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 753156 753202 . - 0 ID=Physo132845;Parent=Physo132845;rank=2 scaffold_22 . exon 753156 753202 . - . ID=Physo132845.2;Parent=Physo132845;constitutive=1;ensembl_phase=1;rank=2 scaffold_22 . CDS 753276 755616 . - 0 ID=Physo132845;Parent=Physo132845;rank=1 scaffold_22 . exon 753276 755616 . - . ID=Physo132845.1;Parent=Physo132845;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_22 . biological_region 758910 758916 0.999 - . logic_name=eponine scaffold_22 . biological_region 758949 758953 0.999 - . logic_name=eponine scaffold_22 . biological_region 758966 758972 0.999 + . logic_name=eponine scaffold_22 . biological_region 759750 759752 0.999 + . logic_name=eponine scaffold_22 . biological_region 761899 761906 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 757923 759154 . - . ID=Physo114824;biotype=protein_coding;external_name=estExt_Genewise1.C_220092;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 757923 759154 . - . ID=Physo114824;Parent=Physo114824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 757923 759068 . - 0 ID=Physo114824;Parent=Physo114824;rank=1 scaffold_22 . exon 757923 759154 . - . ID=Physo114824.1;Parent=Physo114824;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 761394 764085 . + . ID=Physo132848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220196;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 761394 764085 . + . ID=Physo132848;Parent=Physo132848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 761394 761582 . + 0 ID=Physo132848;Parent=Physo132848;rank=1 scaffold_22 . exon 761394 761582 . + . ID=Physo132848.1;Parent=Physo132848;constitutive=1;rank=1 scaffold_22 . CDS 761647 762539 . + 0 ID=Physo132848;Parent=Physo132848;rank=2 scaffold_22 . exon 761647 762539 . + . ID=Physo132848.2;Parent=Physo132848;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_22 . CDS 762816 764085 . + 0 ID=Physo132848;Parent=Physo132848;rank=3 scaffold_22 . exon 762816 764085 . + . ID=Physo132848.3;Parent=Physo132848;constitutive=1;ensembl_phase=2;rank=3 scaffold_22 ensembl protein_coding_gene 760021 761046 . - . ID=Physo156599;biotype=protein_coding;external_name=C_scaffold_22000054;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 760021 761046 . - . ID=Physo156599;Parent=Physo156599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 760021 760061 . - 0 ID=Physo156599;Parent=Physo156599;rank=6 scaffold_22 . exon 760021 760061 . - . ID=Physo156599.6;Parent=Physo156599;constitutive=1;ensembl_phase=1;rank=6 scaffold_22 . CDS 760129 760302 . - 0 ID=Physo156599;Parent=Physo156599;rank=5 scaffold_22 . exon 760129 760302 . - . ID=Physo156599.5;Parent=Physo156599;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_22 . CDS 760376 760507 . - 0 ID=Physo156599;Parent=Physo156599;rank=4 scaffold_22 . exon 760376 760507 . - . ID=Physo156599.4;Parent=Physo156599;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_22 . CDS 760590 760823 . - 0 ID=Physo156599;Parent=Physo156599;rank=3 scaffold_22 . exon 760590 760823 . - . ID=Physo156599.3;Parent=Physo156599;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_22 . CDS 760921 761011 . - 0 ID=Physo156599;Parent=Physo156599;rank=2 scaffold_22 . exon 760921 761011 . - . ID=Physo156599.2;Parent=Physo156599;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_22 . CDS 761035 761046 . - 0 ID=Physo156599;Parent=Physo156599;rank=1 scaffold_22 . exon 761035 761046 . - . ID=Physo156599.1;Parent=Physo156599;constitutive=1;rank=1 scaffold_22 . repeat_region 766056 766242 . ? . description=trf scaffold_22 . repeat_region 767181 767189 . ? . description=dust scaffold_22 . repeat_region 767836 767848 . ? . description=dust scaffold_22 . repeat_region 768991 769017 . ? . description=dust scaffold_22 . repeat_region 769569 769577 . ? . description=dust scaffold_22 . repeat_region 770916 770955 . ? . description=trf scaffold_22 . repeat_region 770951 770968 . ? . description=dust scaffold_22 . repeat_region 772753 772772 . ? . description=dust scaffold_22 . repeat_region 773107 773114 . ? . description=dust scaffold_22 ensembl protein_coding_gene 765796 766407 . - . ID=Physo132849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220197;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 765796 766407 . - . ID=Physo132849;Parent=Physo132849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 765796 766407 . - 0 ID=Physo132849;Parent=Physo132849;rank=1 scaffold_22 . exon 765796 766407 . - . ID=Physo132849.1;Parent=Physo132849;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 773546 774831 . + . ID=Physo132850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220198;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 773546 774831 . + . ID=Physo132850;Parent=Physo132850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 773546 774490 . + 0 ID=Physo132850;Parent=Physo132850;rank=1 scaffold_22 . exon 773546 774490 . + . ID=Physo132850.1;Parent=Physo132850;constitutive=1;rank=1 scaffold_22 . CDS 774742 774831 . + 0 ID=Physo132850;Parent=Physo132850;rank=2 scaffold_22 . biological_region 778426 778431 0.999 - . logic_name=eponine scaffold_22 . biological_region 782832 782835 0.999 - . logic_name=eponine scaffold_22 . biological_region 783908 783909 0.999 + . logic_name=eponine scaffold_22 ensembl protein_coding_gene 781331 782005 . + . ID=Physo108649;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_220010;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 781331 782005 . + . ID=Physo108649;Parent=Physo108649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 781331 782005 . + . ID=Physo108649.1;Parent=Physo108649;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 781383 781880 . + 0 ID=Physo108649;Parent=Physo108649;rank=1 scaffold_22 . exon 774742 774831 . + . ID=Physo132850.2;Parent=Physo132850;constitutive=1;rank=2 scaffold_22 ensembl protein_coding_gene 776202 777312 . + . ID=Physo132851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220199;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 776202 777312 . + . ID=Physo132851;Parent=Physo132851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 776202 776206 . + 0 ID=Physo132851;Parent=Physo132851;rank=1 scaffold_22 . exon 776202 776206 . + . ID=Physo132851.1;Parent=Physo132851;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 776523 777312 . + 0 ID=Physo132851;Parent=Physo132851;rank=2 scaffold_22 . exon 776523 777312 . + . ID=Physo132851.2;Parent=Physo132851;constitutive=1;ensembl_phase=2;rank=2 scaffold_22 ensembl protein_coding_gene 782433 784064 . - . ID=Physo132853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220201;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 782433 784064 . - . ID=Physo132853;Parent=Physo132853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 782433 784064 . - 0 ID=Physo132853;Parent=Physo132853;rank=1 scaffold_22 . exon 782433 784064 . - . ID=Physo132853.1;Parent=Physo132853;constitutive=1;rank=1 scaffold_22 . repeat_region 784235 784243 . ? . description=dust scaffold_22 . repeat_region 786107 786137 . ? . description=dust scaffold_22 . repeat_region 793249 793257 . ? . description=dust scaffold_22 ensembl protein_coding_gene 785949 787600 . + . ID=Physo108650;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_220011;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 785949 787600 . + . ID=Physo108650;Parent=Physo108650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . exon 785949 787600 . + . ID=Physo108650.1;Parent=Physo108650;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_22 . CDS 785986 787071 . + 0 ID=Physo108650;Parent=Physo108650;rank=1 scaffold_22 ensembl protein_coding_gene 784401 785078 . - . ID=Physo132854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220202;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 784401 785078 . - . ID=Physo132854;Parent=Physo132854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 784401 785060 . - 0 ID=Physo132854;Parent=Physo132854;rank=1 scaffold_22 . exon 784401 785078 . - . ID=Physo132854.1;Parent=Physo132854;constitutive=1;ensembl_phase=-1;rank=1 scaffold_22 ensembl protein_coding_gene 788057 791229 . - . ID=Physo132856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220204;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 788057 791229 . - . ID=Physo132856;Parent=Physo132856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 788057 789280 . - 0 ID=Physo132856;Parent=Physo132856;rank=2 scaffold_22 . exon 788057 789280 . - . ID=Physo132856.2;Parent=Physo132856;constitutive=1;rank=2 scaffold_22 . CDS 789349 791229 . - 0 ID=Physo132856;Parent=Physo132856;rank=1 scaffold_22 . exon 789349 791229 . - . ID=Physo132856.1;Parent=Physo132856;constitutive=1;rank=1 scaffold_22 ensembl protein_coding_gene 792644 793163 . + . ID=Physo132857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_220205;logic_name=jgi_physo1_1 scaffold_22 ensembl transcript 792644 793163 . + . ID=Physo132857;Parent=Physo132857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_22 . CDS 792644 792933 . + 0 ID=Physo132857;Parent=Physo132857;rank=1 scaffold_22 . exon 792644 792933 . + . ID=Physo132857.1;Parent=Physo132857;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_22 . CDS 792971 793163 . + 0 ID=Physo132857;Parent=Physo132857;rank=2 scaffold_22 . exon 792971 793163 . + . ID=Physo132857.2;Parent=Physo132857;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_24 1 797403 scaffold_24 . biological_region 2543 2544 0.999 - . logic_name=eponine scaffold_24 . repeat_region 3171 7907 . ? . description=dust scaffold_24 . repeat_region 8075 8102 . ? . description=dust scaffold_24 . repeat_region 8075 8102 . ? . description=trf scaffold_24 ensembl protein_coding_gene 2538 2741 . + . ID=Physo115274;biotype=protein_coding;external_name=estExt_Genewise1.C_240211;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 2538 2741 . + . ID=Physo115274;Parent=Physo115274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 2538 2741 . + . ID=Physo115274.1;Parent=Physo115274;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 2539 2739 . + 0 ID=Physo115274;Parent=Physo115274;rank=1 scaffold_24 ensembl protein_coding_gene 13294 14081 . + . ID=Physo133032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240001;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 13294 14081 . + . ID=Physo133032;Parent=Physo133032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 13294 13345 . + 0 ID=Physo133032;Parent=Physo133032;rank=1 scaffold_24 . exon 13294 13345 . + . ID=Physo133032.1;Parent=Physo133032;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 13483 14081 . + 0 ID=Physo133032;Parent=Physo133032;rank=2 scaffold_24 . exon 13483 14081 . + . ID=Physo133032.2;Parent=Physo133032;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 14979 17256 . + . ID=Physo133033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240002;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 14979 17256 . + . ID=Physo133033;Parent=Physo133033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 14979 15055 . + 0 ID=Physo133033;Parent=Physo133033;rank=1 scaffold_24 . exon 14979 15055 . + . ID=Physo133033.1;Parent=Physo133033;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 15139 15181 . + 0 ID=Physo133033;Parent=Physo133033;rank=2 scaffold_24 . exon 15139 15181 . + . ID=Physo133033.2;Parent=Physo133033;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 15262 17256 . + 0 ID=Physo133033;Parent=Physo133033;rank=3 scaffold_24 . exon 15262 17256 . + . ID=Physo133033.3;Parent=Physo133033;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 18836 20092 . + . ID=Physo133034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240003;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 18836 20092 . + . ID=Physo133034;Parent=Physo133034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 18836 20092 . + 0 ID=Physo133034;Parent=Physo133034;rank=1 scaffold_24 . exon 18836 20092 . + . ID=Physo133034.1;Parent=Physo133034;constitutive=1;rank=1 scaffold_24 . biological_region 19937 19943 0.999 - . logic_name=eponine scaffold_24 . biological_region 19994 19999 0.999 + . logic_name=eponine scaffold_24 . biological_region 21680 21680 0.999 - . logic_name=eponine scaffold_24 . biological_region 21874 21879 0.999 + . logic_name=eponine scaffold_24 . repeat_region 21977 21988 . ? . description=dust scaffold_24 . biological_region 22485 22491 0.999 - . logic_name=eponine scaffold_24 . biological_region 22872 22873 0.999 - . logic_name=eponine scaffold_24 . repeat_region 22940 22993 . ? . description=dust scaffold_24 . biological_region 23722 23724 0.999 + . logic_name=eponine scaffold_24 . biological_region 23829 23829 0.999 - . logic_name=eponine scaffold_24 . biological_region 23902 23904 0.999 + . logic_name=eponine scaffold_24 . biological_region 25544 25551 0.999 + . logic_name=eponine scaffold_24 . biological_region 25565 25570 0.999 + . logic_name=eponine scaffold_24 . biological_region 26667 26671 0.999 - . logic_name=eponine scaffold_24 . biological_region 27102 27106 0.999 - . logic_name=eponine scaffold_24 . biological_region 27450 27455 0.999 + . logic_name=eponine scaffold_24 . repeat_region 29725 29744 . ? . description=trf scaffold_24 ensembl protein_coding_gene 20671 21869 . - . ID=Physo108670;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240001;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 20671 21869 . - . ID=Physo108670;Parent=Physo108670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 20671 21869 . - . ID=Physo108670.1;Parent=Physo108670;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 20797 21807 . - 0 ID=Physo108670;Parent=Physo108670;rank=1 scaffold_24 ensembl protein_coding_gene 24418 26088 . - . ID=Physo108671;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240002;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 24418 26088 . - . ID=Physo108671;Parent=Physo108671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 24418 26088 . - . ID=Physo108671.1;Parent=Physo108671;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 24568 26055 . - 0 ID=Physo108671;Parent=Physo108671;rank=1 scaffold_24 ensembl protein_coding_gene 27359 28665 . + . ID=Physo108672;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240003;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 27359 28665 . + . ID=Physo108672;Parent=Physo108672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 27359 28387 . + 0 ID=Physo108672;Parent=Physo108672;rank=1 scaffold_24 . exon 27359 28387 . + . ID=Physo108672.1;Parent=Physo108672;constitutive=1;rank=1 scaffold_24 . CDS 28468 28665 . + 0 ID=Physo108672;Parent=Physo108672;rank=2 scaffold_24 . exon 28468 28665 . + . ID=Physo108672.2;Parent=Physo108672;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 22997 23811 . - . ID=Physo115231;biotype=protein_coding;external_name=estExt_Genewise1.C_240168;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 22997 23811 . - . ID=Physo115231;Parent=Physo115231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 22997 23299 . - . ID=Physo115231.3;Parent=Physo115231;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_24 . CDS 23150 23299 . - 0 ID=Physo115231;Parent=Physo115231;rank=3 scaffold_24 . CDS 23443 23562 . - 0 ID=Physo115231;Parent=Physo115231;rank=2 scaffold_24 . exon 23443 23562 . - . ID=Physo115231.2;Parent=Physo115231;constitutive=1;rank=2 scaffold_24 . CDS 23693 23809 . - 0 ID=Physo115231;Parent=Physo115231;rank=1 scaffold_24 . exon 23693 23811 . - . ID=Physo115231.1;Parent=Physo115231;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 26245 27221 . + . ID=Physo133038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240007;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 26245 27221 . + . ID=Physo133038;Parent=Physo133038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 26245 26737 . + 0 ID=Physo133038;Parent=Physo133038;rank=1 scaffold_24 . exon 26245 26737 . + . ID=Physo133038.1;Parent=Physo133038;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 26819 26953 . + 0 ID=Physo133038;Parent=Physo133038;rank=2 scaffold_24 . exon 26819 26953 . + . ID=Physo133038.2;Parent=Physo133038;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 27031 27221 . + 0 ID=Physo133038;Parent=Physo133038;rank=3 scaffold_24 . exon 27031 27221 . + . ID=Physo133038.3;Parent=Physo133038;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 ensembl protein_coding_gene 28768 29401 . - . ID=Physo133040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240009;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 28768 29401 . - . ID=Physo133040;Parent=Physo133040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 28768 28970 . - 0 ID=Physo133040;Parent=Physo133040;rank=3 scaffold_24 . exon 28768 28970 . - . ID=Physo133040.3;Parent=Physo133040;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 29043 29177 . - 0 ID=Physo133040;Parent=Physo133040;rank=2 scaffold_24 . exon 29043 29177 . - . ID=Physo133040.2;Parent=Physo133040;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 29263 29401 . - 0 ID=Physo133040;Parent=Physo133040;rank=1 scaffold_24 . exon 29263 29401 . - . ID=Physo133040.1;Parent=Physo133040;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 30358 32003 . - . ID=Physo133041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240010;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 30358 32003 . - . ID=Physo133041;Parent=Physo133041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 30358 31923 . - 0 ID=Physo133041;Parent=Physo133041;rank=2 scaffold_24 . exon 30358 31923 . - . ID=Physo133041.2;Parent=Physo133041;constitutive=1;rank=2 scaffold_24 . CDS 31992 32003 . - 0 ID=Physo133041;Parent=Physo133041;rank=1 scaffold_24 . exon 31992 32003 . - . ID=Physo133041.1;Parent=Physo133041;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 33083 33954 . - . ID=Physo133042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240011;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 33083 33954 . - . ID=Physo133042;Parent=Physo133042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 33083 33855 . - 0 ID=Physo133042;Parent=Physo133042;rank=2 scaffold_24 . exon 33083 33855 . - . ID=Physo133042.2;Parent=Physo133042;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 33930 33954 . - 0 ID=Physo133042;Parent=Physo133042;rank=1 scaffold_24 . exon 33930 33954 . - . ID=Physo133042.1;Parent=Physo133042;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 36143 36910 . - . ID=Physo133043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240012;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 36143 36910 . - . ID=Physo133043;Parent=Physo133043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 36143 36165 . - 0 ID=Physo133043;Parent=Physo133043;rank=2 scaffold_24 . exon 36143 36165 . - . ID=Physo133043.2;Parent=Physo133043;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 36277 36910 . - 0 ID=Physo133043;Parent=Physo133043;rank=1 scaffold_24 . exon 36277 36910 . - . ID=Physo133043.1;Parent=Physo133043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 42069 42099 . ? . description=trf scaffold_24 . repeat_region 42075 42099 . ? . description=trf scaffold_24 . biological_region 45089 45094 0.999 - . logic_name=eponine scaffold_24 . repeat_region 46455 46492 . ? . description=trf scaffold_24 . biological_region 48934 48937 0.999 - . logic_name=eponine scaffold_24 . biological_region 48943 48944 0.999 + . logic_name=eponine scaffold_24 . biological_region 48990 48990 0.999 + . logic_name=eponine scaffold_24 . biological_region 48992 48998 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 41336 42063 . + . ID=Physo133044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240013;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 41336 42063 . + . ID=Physo133044;Parent=Physo133044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 41336 41697 . + 0 ID=Physo133044;Parent=Physo133044;rank=1 scaffold_24 . exon 41336 41697 . + . ID=Physo133044.1;Parent=Physo133044;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 41775 42063 . + 0 ID=Physo133044;Parent=Physo133044;rank=2 scaffold_24 . exon 41775 42063 . + . ID=Physo133044.2;Parent=Physo133044;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 ensembl protein_coding_gene 42532 44058 . + . ID=Physo133045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240014;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 42532 44058 . + . ID=Physo133045;Parent=Physo133045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 42532 42627 . + 0 ID=Physo133045;Parent=Physo133045;rank=1 scaffold_24 . exon 42532 42627 . + . ID=Physo133045.1;Parent=Physo133045;constitutive=1;rank=1 scaffold_24 . CDS 42783 42947 . + 0 ID=Physo133045;Parent=Physo133045;rank=2 scaffold_24 . exon 42783 42947 . + . ID=Physo133045.2;Parent=Physo133045;constitutive=1;rank=2 scaffold_24 . CDS 43012 43137 . + 0 ID=Physo133045;Parent=Physo133045;rank=3 scaffold_24 . exon 43012 43137 . + . ID=Physo133045.3;Parent=Physo133045;constitutive=1;rank=3 scaffold_24 . CDS 43208 43324 . + 0 ID=Physo133045;Parent=Physo133045;rank=4 scaffold_24 . exon 43208 43324 . + . ID=Physo133045.4;Parent=Physo133045;constitutive=1;rank=4 scaffold_24 . CDS 43399 43585 . + 0 ID=Physo133045;Parent=Physo133045;rank=5 scaffold_24 . exon 43399 43585 . + . ID=Physo133045.5;Parent=Physo133045;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_24 . CDS 43661 44058 . + 0 ID=Physo133045;Parent=Physo133045;rank=6 scaffold_24 . exon 43661 44058 . + . ID=Physo133045.6;Parent=Physo133045;constitutive=1;ensembl_phase=1;rank=6 scaffold_24 ensembl protein_coding_gene 44587 45159 . + . ID=Physo133046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240015;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 44587 45159 . + . ID=Physo133046;Parent=Physo133046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 44587 45159 . + 0 ID=Physo133046;Parent=Physo133046;rank=1 scaffold_24 . exon 44587 45159 . + . ID=Physo133046.1;Parent=Physo133046;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 45813 47569 . + . ID=Physo133047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240016;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 45813 47569 . + . ID=Physo133047;Parent=Physo133047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 45813 46171 . + 0 ID=Physo133047;Parent=Physo133047;rank=1 scaffold_24 . exon 45813 46171 . + . ID=Physo133047.1;Parent=Physo133047;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 46233 46522 . + 0 ID=Physo133047;Parent=Physo133047;rank=2 scaffold_24 . exon 46233 46522 . + . ID=Physo133047.2;Parent=Physo133047;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 46571 46736 . + 0 ID=Physo133047;Parent=Physo133047;rank=3 scaffold_24 . exon 46571 46736 . + . ID=Physo133047.3;Parent=Physo133047;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_24 . CDS 46839 47101 . + 0 ID=Physo133047;Parent=Physo133047;rank=4 scaffold_24 . exon 46839 47101 . + . ID=Physo133047.4;Parent=Physo133047;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 47181 47569 . + 0 ID=Physo133047;Parent=Physo133047;rank=5 scaffold_24 . exon 47181 47569 . + . ID=Physo133047.5;Parent=Physo133047;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 . repeat_region 51743 51837 . ? . description=dust scaffold_24 . repeat_region 58722 58755 . ? . description=dust scaffold_24 ensembl protein_coding_gene 58663 59152 . + . ID=Physo108673;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240004;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 58663 59152 . + . ID=Physo108673;Parent=Physo108673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 58663 59152 . + . ID=Physo108673.1;Parent=Physo108673;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 58664 59092 . + 0 ID=Physo108673;Parent=Physo108673;rank=1 scaffold_24 ensembl protein_coding_gene 50158 52416 . + . ID=Physo133048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240017;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 50158 52416 . + . ID=Physo133048;Parent=Physo133048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 50158 52416 . + 0 ID=Physo133048;Parent=Physo133048;rank=1 scaffold_24 . exon 50158 52416 . + . ID=Physo133048.1;Parent=Physo133048;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 52545 53147 . - . ID=Physo133049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240018;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 52545 53147 . - . ID=Physo133049;Parent=Physo133049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 52545 53147 . - 0 ID=Physo133049;Parent=Physo133049;rank=1 scaffold_24 . exon 52545 53147 . - . ID=Physo133049.1;Parent=Physo133049;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 53411 56002 . + . ID=Physo133050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240019;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 53411 56002 . + . ID=Physo133050;Parent=Physo133050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 53411 56002 . + 0 ID=Physo133050;Parent=Physo133050;rank=1 scaffold_24 . exon 53411 56002 . + . ID=Physo133050.1;Parent=Physo133050;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 56611 57438 . + . ID=Physo133051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240020;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 56611 57438 . + . ID=Physo133051;Parent=Physo133051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 56611 57438 . + 0 ID=Physo133051;Parent=Physo133051;rank=1 scaffold_24 . exon 56611 57438 . + . ID=Physo133051.1;Parent=Physo133051;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 57523 58500 . - . ID=Physo133052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240021;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 57523 58500 . - . ID=Physo133052;Parent=Physo133052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 57523 58488 . - 0 ID=Physo133052;Parent=Physo133052;rank=1 scaffold_24 . exon 57523 58500 . - . ID=Physo133052.1;Parent=Physo133052;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 59312 60016 . - . ID=Physo156623;biotype=protein_coding;external_name=C_scaffold_24000001;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 59312 60016 . - . ID=Physo156623;Parent=Physo156623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 59312 59576 . - 0 ID=Physo156623;Parent=Physo156623;rank=2 scaffold_24 . exon 59312 59576 . - . ID=Physo156623.2;Parent=Physo156623;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 59664 60016 . - 0 ID=Physo156623;Parent=Physo156623;rank=1 scaffold_24 . exon 59664 60016 . - . ID=Physo156623.1;Parent=Physo156623;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . repeat_region 66992 67015 . ? . description=trf scaffold_24 ensembl protein_coding_gene 60401 61623 . + . ID=Physo133055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240024;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 60401 61623 . + . ID=Physo133055;Parent=Physo133055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 60401 61594 . + 0 ID=Physo133055;Parent=Physo133055;rank=1 scaffold_24 . exon 60401 61623 . + . ID=Physo133055.1;Parent=Physo133055;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 61799 63735 . + . ID=Physo133056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240025;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 61799 63735 . + . ID=Physo133056;Parent=Physo133056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 61799 63715 . + 0 ID=Physo133056;Parent=Physo133056;rank=1 scaffold_24 . exon 61799 63735 . + . ID=Physo133056.1;Parent=Physo133056;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 64314 64772 . - . ID=Physo156626;biotype=protein_coding;external_name=C_scaffold_24000004;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 64314 64772 . - . ID=Physo156626;Parent=Physo156626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 64314 64438 . - 0 ID=Physo156626;Parent=Physo156626;rank=2 scaffold_24 . exon 64314 64438 . - . ID=Physo156626.2;Parent=Physo156626;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 64535 64772 . - 0 ID=Physo156626;Parent=Physo156626;rank=1 scaffold_24 . exon 64535 64772 . - . ID=Physo156626.1;Parent=Physo156626;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . biological_region 71406 71409 0.999 - . logic_name=eponine scaffold_24 . biological_region 72227 72230 0.999 + . logic_name=eponine scaffold_24 . biological_region 72769 72774 0.999 + . logic_name=eponine scaffold_24 . biological_region 74235 74240 0.999 - . logic_name=eponine scaffold_24 . biological_region 75794 75796 0.999 + . logic_name=eponine scaffold_24 . biological_region 75815 75817 0.999 + . logic_name=eponine scaffold_24 . biological_region 77426 77429 0.999 + . logic_name=eponine scaffold_24 . biological_region 77689 77693 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 71336 72670 . + . ID=Physo108676;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240007;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 71336 72670 . + . ID=Physo108676;Parent=Physo108676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 71336 71381 . + . ID=Physo108676.1;Parent=Physo108676;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 71367 71381 . + 0 ID=Physo108676;Parent=Physo108676;rank=1 scaffold_24 . CDS 71541 72518 . + 0 ID=Physo108676;Parent=Physo108676;rank=2 scaffold_24 . exon 71541 72670 . + . ID=Physo108676.2;Parent=Physo108676;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_24 ensembl protein_coding_gene 77114 78763 . - . ID=Physo133062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240031;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 77114 78763 . - . ID=Physo133062;Parent=Physo133062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 77114 77719 . - 0 ID=Physo133062;Parent=Physo133062;rank=3 scaffold_24 . exon 77114 77719 . - . ID=Physo133062.3;Parent=Physo133062;constitutive=1;rank=3 scaffold_24 . CDS 77937 77967 . - 0 ID=Physo133062;Parent=Physo133062;rank=2 scaffold_24 . exon 77937 77967 . - . ID=Physo133062.2;Parent=Physo133062;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 78151 78707 . - 0 ID=Physo133062;Parent=Physo133062;rank=1 scaffold_24 . exon 78151 78763 . - . ID=Physo133062.1;Parent=Physo133062;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 72744 74280 . - . ID=Physo156628;biotype=protein_coding;external_name=C_scaffold_24000006;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 72744 74280 . - . ID=Physo156628;Parent=Physo156628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 72744 73434 . - 0 ID=Physo156628;Parent=Physo156628;rank=2 scaffold_24 . exon 72744 73434 . - . ID=Physo156628.2;Parent=Physo156628;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 73685 74280 . - 0 ID=Physo156628;Parent=Physo156628;rank=1 scaffold_24 . exon 73685 74280 . - . ID=Physo156628.1;Parent=Physo156628;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 75396 75857 . - . ID=Physo156629;biotype=protein_coding;external_name=C_scaffold_24000007;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 75396 75857 . - . ID=Physo156629;Parent=Physo156629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 75396 75857 . - 0 ID=Physo156629;Parent=Physo156629;rank=1 scaffold_24 . exon 75396 75857 . - . ID=Physo156629.1;Parent=Physo156629;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 76169 76555 . - . ID=Physo156631;biotype=protein_coding;external_name=C_scaffold_24000009;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 76169 76555 . - . ID=Physo156631;Parent=Physo156631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 76169 76555 . - 0 ID=Physo156631;Parent=Physo156631;rank=1 scaffold_24 . exon 76169 76555 . - . ID=Physo156631.1;Parent=Physo156631;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 80321 81571 . + . ID=Physo133063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240032;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 80321 81571 . + . ID=Physo133063;Parent=Physo133063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 80321 80605 . + 0 ID=Physo133063;Parent=Physo133063;rank=1 scaffold_24 . exon 80321 80605 . + . ID=Physo133063.1;Parent=Physo133063;constitutive=1;rank=1 scaffold_24 . CDS 80753 81571 . + 0 ID=Physo133063;Parent=Physo133063;rank=2 scaffold_24 . exon 80753 81571 . + . ID=Physo133063.2;Parent=Physo133063;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 81887 82459 . + . ID=Physo133064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240033;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 81887 82459 . + . ID=Physo133064;Parent=Physo133064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 81887 82459 . + 0 ID=Physo133064;Parent=Physo133064;rank=1 scaffold_24 . exon 81887 82459 . + . ID=Physo133064.1;Parent=Physo133064;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 82556 83071 . - . ID=Physo133065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240034;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 82556 83071 . - . ID=Physo133065;Parent=Physo133065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 82556 83071 . - 0 ID=Physo133065;Parent=Physo133065;rank=1 scaffold_24 . exon 82556 83071 . - . ID=Physo133065.1;Parent=Physo133065;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 85831 87471 . + . ID=Physo133066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240035;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 85831 87471 . + . ID=Physo133066;Parent=Physo133066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 85831 85966 . + 0 ID=Physo133066;Parent=Physo133066;rank=1 scaffold_24 . exon 85831 85966 . + . ID=Physo133066.1;Parent=Physo133066;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 86066 86107 . + 0 ID=Physo133066;Parent=Physo133066;rank=2 scaffold_24 . exon 86066 86107 . + . ID=Physo133066.2;Parent=Physo133066;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 86318 87471 . + 0 ID=Physo133066;Parent=Physo133066;rank=3 scaffold_24 . exon 86318 87471 . + . ID=Physo133066.3;Parent=Physo133066;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . repeat_region 93232 93260 . ? . description=trf scaffold_24 . repeat_region 93232 93260 . + . description=(AGCTG)n scaffold_24 . biological_region 94526 94527 0.999 - . logic_name=eponine scaffold_24 . biological_region 94581 94583 0.999 + . logic_name=eponine scaffold_24 . repeat_region 97005 97065 . ? . description=trf scaffold_24 . biological_region 99378 99381 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 91387 92058 . + . ID=Physo133067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240036;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 91387 92058 . + . ID=Physo133067;Parent=Physo133067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 91387 92058 . + 0 ID=Physo133067;Parent=Physo133067;rank=1 scaffold_24 . exon 91387 92058 . + . ID=Physo133067.1;Parent=Physo133067;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 92352 93107 . + . ID=Physo133068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240037;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 92352 93107 . + . ID=Physo133068;Parent=Physo133068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 92352 93107 . + 0 ID=Physo133068;Parent=Physo133068;rank=1 scaffold_24 . exon 92352 93107 . + . ID=Physo133068.1;Parent=Physo133068;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 93255 94659 . - . ID=Physo133069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240038;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 93255 94659 . - . ID=Physo133069;Parent=Physo133069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 93255 93323 . - 0 ID=Physo133069;Parent=Physo133069;rank=3 scaffold_24 . exon 93255 93323 . - . ID=Physo133069.3;Parent=Physo133069;constitutive=1;rank=3 scaffold_24 . CDS 93398 94021 . - 0 ID=Physo133069;Parent=Physo133069;rank=2 scaffold_24 . exon 93398 94021 . - . ID=Physo133069.2;Parent=Physo133069;constitutive=1;rank=2 scaffold_24 . CDS 94096 94659 . - 0 ID=Physo133069;Parent=Physo133069;rank=1 scaffold_24 . exon 94096 94659 . - . ID=Physo133069.1;Parent=Physo133069;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 95227 96431 . + . ID=Physo133070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240039;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 95227 96431 . + . ID=Physo133070;Parent=Physo133070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 95227 95294 . + 0 ID=Physo133070;Parent=Physo133070;rank=1 scaffold_24 . exon 95227 95294 . + . ID=Physo133070.1;Parent=Physo133070;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 95399 95497 . + 0 ID=Physo133070;Parent=Physo133070;rank=2 scaffold_24 . exon 95399 95497 . + . ID=Physo133070.2;Parent=Physo133070;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 95579 96431 . + 0 ID=Physo133070;Parent=Physo133070;rank=3 scaffold_24 . exon 95579 96431 . + . ID=Physo133070.3;Parent=Physo133070;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 ensembl protein_coding_gene 96558 97234 . - . ID=Physo133071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240040;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 96558 97234 . - . ID=Physo133071;Parent=Physo133071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 96558 96613 . - 0 ID=Physo133071;Parent=Physo133071;rank=3 scaffold_24 . exon 96558 96613 . - . ID=Physo133071.3;Parent=Physo133071;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 96698 97003 . - 0 ID=Physo133071;Parent=Physo133071;rank=2 scaffold_24 . exon 96698 97003 . - . ID=Physo133071.2;Parent=Physo133071;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 97075 97234 . - 0 ID=Physo133071;Parent=Physo133071;rank=1 scaffold_24 . exon 97075 97234 . - . ID=Physo133071.1;Parent=Physo133071;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 104263 104270 . ? . description=dust scaffold_24 . repeat_region 106784 106791 . ? . description=dust scaffold_24 . repeat_region 108269 108281 . ? . description=dust scaffold_24 . repeat_region 108546 108555 . ? . description=dust scaffold_24 ensembl protein_coding_gene 104469 107256 . - . ID=Physo133072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240041;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 104469 107256 . - . ID=Physo133072;Parent=Physo133072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 104469 106606 . - 0 ID=Physo133072;Parent=Physo133072;rank=2 scaffold_24 . exon 104469 106606 . - . ID=Physo133072.2;Parent=Physo133072;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 106926 107256 . - 0 ID=Physo133072;Parent=Physo133072;rank=1 scaffold_24 . exon 106926 107256 . - . ID=Physo133072.1;Parent=Physo133072;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . biological_region 115294 115295 0.999 + . logic_name=eponine scaffold_24 . biological_region 115497 115502 0.999 - . logic_name=eponine scaffold_24 . biological_region 116148 116151 0.999 + . logic_name=eponine scaffold_24 . biological_region 116227 116229 0.999 + . logic_name=eponine scaffold_24 . biological_region 117062 117065 0.999 - . logic_name=eponine scaffold_24 . biological_region 117426 117428 0.999 - . logic_name=eponine scaffold_24 . biological_region 117489 117492 0.999 + . logic_name=eponine scaffold_24 . biological_region 117909 117912 0.999 + . logic_name=eponine scaffold_24 . biological_region 117926 117930 0.999 - . logic_name=eponine scaffold_24 . biological_region 117954 117958 0.999 - . logic_name=eponine scaffold_24 . biological_region 117986 117988 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 115170 118169 . + . ID=Physo133073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240042;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 115170 118169 . + . ID=Physo133073;Parent=Physo133073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 115170 115177 . + 0 ID=Physo133073;Parent=Physo133073;rank=1 scaffold_24 . exon 115170 115177 . + . ID=Physo133073.1;Parent=Physo133073;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 115214 115301 . + 0 ID=Physo133073;Parent=Physo133073;rank=2 scaffold_24 . exon 115214 115301 . + . ID=Physo133073.2;Parent=Physo133073;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 115331 115609 . + 0 ID=Physo133073;Parent=Physo133073;rank=3 scaffold_24 . exon 115331 115609 . + . ID=Physo133073.3;Parent=Physo133073;constitutive=1;rank=3 scaffold_24 . CDS 115763 115955 . + 0 ID=Physo133073;Parent=Physo133073;rank=4 scaffold_24 . exon 115763 115955 . + . ID=Physo133073.4;Parent=Physo133073;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_24 . CDS 116020 116152 . + 0 ID=Physo133073;Parent=Physo133073;rank=5 scaffold_24 . exon 116020 116152 . + . ID=Physo133073.5;Parent=Physo133073;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_24 . CDS 116174 116294 . + 0 ID=Physo133073;Parent=Physo133073;rank=6 scaffold_24 . exon 116174 116294 . + . ID=Physo133073.6;Parent=Physo133073;constitutive=1;ensembl_phase=2;rank=6 scaffold_24 . CDS 116900 117109 . + 0 ID=Physo133073;Parent=Physo133073;rank=7 scaffold_24 . exon 116900 117109 . + . ID=Physo133073.7;Parent=Physo133073;constitutive=1;rank=7 scaffold_24 . CDS 117148 117363 . + 0 ID=Physo133073;Parent=Physo133073;rank=8 scaffold_24 . exon 117148 117363 . + . ID=Physo133073.8;Parent=Physo133073;constitutive=1;rank=8 scaffold_24 . CDS 117438 118061 . + 0 ID=Physo133073;Parent=Physo133073;rank=9 scaffold_24 . exon 117438 118169 . + . ID=Physo133073.9;Parent=Physo133073;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_24 ensembl protein_coding_gene 118349 119663 . - . ID=Physo133074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240043;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 118349 119663 . - . ID=Physo133074;Parent=Physo133074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 118349 118494 . - . ID=Physo133074.6;Parent=Physo133074;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_24 . CDS 118387 118494 . - 0 ID=Physo133074;Parent=Physo133074;rank=4 scaffold_24 . CDS 118588 118769 . - 0 ID=Physo133074;Parent=Physo133074;rank=3 scaffold_24 . exon 118588 118769 . - . ID=Physo133074.5;Parent=Physo133074;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 118833 118909 . - 0 ID=Physo133074;Parent=Physo133074;rank=2 scaffold_24 . exon 118833 118909 . - . ID=Physo133074.4;Parent=Physo133074;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 119015 119031 . - 0 ID=Physo133074;Parent=Physo133074;rank=1 scaffold_24 . exon 119015 119365 . - . ID=Physo133074.3;Parent=Physo133074;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=3 scaffold_24 . exon 119437 119480 . - . ID=Physo133074.2;Parent=Physo133074;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_24 . repeat_region 129296 129366 . ? . description=trf scaffold_24 . exon 119622 119663 . - . ID=Physo133074.1;Parent=Physo133074;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 122271 126409 . - . ID=Physo133075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240044;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 122271 126409 . - . ID=Physo133075;Parent=Physo133075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 122271 122497 . - . ID=Physo133075.4;Parent=Physo133075;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_24 . CDS 122282 122497 . - 0 ID=Physo133075;Parent=Physo133075;rank=4 scaffold_24 . CDS 122549 124387 . - 0 ID=Physo133075;Parent=Physo133075;rank=3 scaffold_24 . exon 122549 124387 . - . ID=Physo133075.3;Parent=Physo133075;constitutive=1;rank=3 scaffold_24 . CDS 124409 124561 . - 0 ID=Physo133075;Parent=Physo133075;rank=2 scaffold_24 . exon 124409 124561 . - . ID=Physo133075.2;Parent=Physo133075;constitutive=1;rank=2 scaffold_24 . CDS 124601 126409 . - 0 ID=Physo133075;Parent=Physo133075;rank=1 scaffold_24 . exon 124601 126409 . - . ID=Physo133075.1;Parent=Physo133075;constitutive=1;rank=1 scaffold_24 . biological_region 130674 130678 0.999 + . logic_name=eponine scaffold_24 . biological_region 131615 131618 0.999 - . logic_name=eponine scaffold_24 . biological_region 131618 131620 0.999 + . logic_name=eponine scaffold_24 . biological_region 133000 133002 0.999 + . logic_name=eponine scaffold_24 . biological_region 136781 136783 0.999 - . logic_name=eponine scaffold_24 . repeat_region 137961 137985 . ? . description=dust scaffold_24 ensembl protein_coding_gene 135724 137119 . - . ID=Physo108677;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240008;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 135724 137119 . - . ID=Physo108677;Parent=Physo108677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 135724 135979 . - . ID=Physo108677.3;Parent=Physo108677;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_24 . CDS 135878 135979 . - 0 ID=Physo108677;Parent=Physo108677;rank=3 scaffold_24 . CDS 136060 136902 . - 0 ID=Physo108677;Parent=Physo108677;rank=2 scaffold_24 . exon 136060 136902 . - . ID=Physo108677.2;Parent=Physo108677;constitutive=1;rank=2 scaffold_24 . CDS 136976 137119 . - 0 ID=Physo108677;Parent=Physo108677;rank=1 scaffold_24 . exon 136976 137119 . - . ID=Physo108677.1;Parent=Physo108677;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 130314 134339 . - . ID=Physo133076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240045;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 130314 134339 . - . ID=Physo133076;Parent=Physo133076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 130314 132084 . - 0 ID=Physo133076;Parent=Physo133076;rank=6 scaffold_24 . exon 130314 132084 . - . ID=Physo133076.6;Parent=Physo133076;constitutive=1;ensembl_phase=2;rank=6 scaffold_24 . CDS 132153 132372 . - 0 ID=Physo133076;Parent=Physo133076;rank=5 scaffold_24 . exon 132153 132372 . - . ID=Physo133076.5;Parent=Physo133076;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_24 . CDS 132406 132946 . - 0 ID=Physo133076;Parent=Physo133076;rank=4 scaffold_24 . exon 132406 132946 . - . ID=Physo133076.4;Parent=Physo133076;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_24 . CDS 133030 133616 . - 0 ID=Physo133076;Parent=Physo133076;rank=3 scaffold_24 . exon 133030 133616 . - . ID=Physo133076.3;Parent=Physo133076;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 133640 134075 . - 0 ID=Physo133076;Parent=Physo133076;rank=2 scaffold_24 . exon 133640 134075 . - . ID=Physo133076.2;Parent=Physo133076;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 134142 134339 . - 0 ID=Physo133076;Parent=Physo133076;rank=1 scaffold_24 . exon 134142 134339 . - . ID=Physo133076.1;Parent=Physo133076;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 144571 145342 . - . ID=Physo133078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240047;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 144571 145342 . - . ID=Physo133078;Parent=Physo133078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 144571 144578 . - 0 ID=Physo133078;Parent=Physo133078;rank=2 scaffold_24 . exon 144571 144578 . - . ID=Physo133078.2;Parent=Physo133078;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 144607 145342 . - 0 ID=Physo133078;Parent=Physo133078;rank=1 scaffold_24 . exon 144607 145342 . - . ID=Physo133078.1;Parent=Physo133078;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 150691 150733 . ? . description=trf scaffold_24 . repeat_region 150752 150898 . ? . description=trf scaffold_24 . biological_region 151539 151545 0.999 + . logic_name=eponine scaffold_24 . repeat_region 151547 151606 . ? . description=dust scaffold_24 . repeat_region 151549 151603 . ? . description=trf scaffold_24 . repeat_region 151549 151648 . ? . description=trf scaffold_24 . repeat_region 151560 151613 . ? . description=trf scaffold_24 . repeat_region 151592 151631 . ? . description=trf scaffold_24 . repeat_region 154860 154872 . ? . description=dust scaffold_24 . biological_region 156513 156516 0.999 + . logic_name=eponine scaffold_24 . biological_region 156579 156582 0.999 + . logic_name=eponine scaffold_24 . biological_region 156942 156945 0.999 + . logic_name=eponine scaffold_24 . biological_region 156971 156973 0.999 - . logic_name=eponine scaffold_24 . repeat_region 157543 159926 . + . description=GypsyPi-1c_I-int scaffold_24 ensembl protein_coding_gene 153905 155096 . - . ID=Physo133079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240048;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 153905 155096 . - . ID=Physo133079;Parent=Physo133079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 153905 154335 . - 0 ID=Physo133079;Parent=Physo133079;rank=4 scaffold_24 . exon 153905 154335 . - . ID=Physo133079.4;Parent=Physo133079;constitutive=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 154407 154526 . - 0 ID=Physo133079;Parent=Physo133079;rank=3 scaffold_24 . exon 154407 154526 . - . ID=Physo133079.3;Parent=Physo133079;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 154722 154792 . - 0 ID=Physo133079;Parent=Physo133079;rank=2 scaffold_24 . exon 154722 154792 . - . ID=Physo133079.2;Parent=Physo133079;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 154909 155096 . - 0 ID=Physo133079;Parent=Physo133079;rank=1 scaffold_24 . exon 154909 155096 . - . ID=Physo133079.1;Parent=Physo133079;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 156202 160289 . + . ID=Physo133080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240049;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 156202 160289 . + . ID=Physo133080;Parent=Physo133080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 156202 156426 . + 0 ID=Physo133080;Parent=Physo133080;rank=1 scaffold_24 . exon 156202 156426 . + . ID=Physo133080.1;Parent=Physo133080;constitutive=1;rank=1 scaffold_24 . CDS 156467 156551 . + 0 ID=Physo133080;Parent=Physo133080;rank=2 scaffold_24 . exon 156467 156551 . + . ID=Physo133080.2;Parent=Physo133080;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 156956 157074 . + 0 ID=Physo133080;Parent=Physo133080;rank=3 scaffold_24 . exon 156956 157074 . + . ID=Physo133080.3;Parent=Physo133080;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 157472 158832 . + 0 ID=Physo133080;Parent=Physo133080;rank=4 scaffold_24 . exon 157472 158832 . + . ID=Physo133080.4;Parent=Physo133080;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_24 . CDS 158956 160242 . + 0 ID=Physo133080;Parent=Physo133080;rank=5 scaffold_24 . exon 158956 160242 . + . ID=Physo133080.5;Parent=Physo133080;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_24 . CDS 160283 160289 . + 0 ID=Physo133080;Parent=Physo133080;rank=6 scaffold_24 . exon 160283 160289 . + . ID=Physo133080.6;Parent=Physo133080;constitutive=1;ensembl_phase=2;rank=6 scaffold_24 . repeat_region 172592 172709 . ? . description=trf scaffold_24 . repeat_region 174797 174966 . + . description=(CGAT)n scaffold_24 . repeat_region 174807 174965 . ? . description=trf scaffold_24 . repeat_region 174869 174964 . ? . description=trf scaffold_24 . repeat_region 174869 174964 . ? . description=trf scaffold_24 . repeat_region 174885 174946 . ? . description=dust scaffold_24 . biological_region 174969 174975 0.999 - . logic_name=eponine scaffold_24 . repeat_region 177291 177317 . ? . description=dust scaffold_24 ensembl protein_coding_gene 187149 188430 . - . ID=Physo133081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240050;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 187149 188430 . - . ID=Physo133081;Parent=Physo133081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 187149 187152 . - 0 ID=Physo133081;Parent=Physo133081;rank=2 scaffold_24 . exon 187149 187152 . - . ID=Physo133081.2;Parent=Physo133081;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 187310 188430 . - 0 ID=Physo133081;Parent=Physo133081;rank=1 scaffold_24 . exon 187310 188430 . - . ID=Physo133081.1;Parent=Physo133081;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . biological_region 192288 192289 0.999 + . logic_name=eponine scaffold_24 . biological_region 192887 192888 0.999 + . logic_name=eponine scaffold_24 . biological_region 197988 197989 0.999 - . logic_name=eponine scaffold_24 . biological_region 198587 198588 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 191350 192972 . - . ID=Physo133082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240051;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 191350 192972 . - . ID=Physo133082;Parent=Physo133082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 191350 192972 . - . ID=Physo133082.1;Parent=Physo133082;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_24 . CDS 191431 192972 . - 0 ID=Physo133082;Parent=Physo133082;rank=1 scaffold_24 ensembl pseudogene 197903 199451 . + . ID=Physo133083;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_240052;logic_name=jgi_physo1_1 scaffold_24 ensembl pseudogene 197903 199451 . + . ID=Physo133083;Parent=Physo133083;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_24 . exon 197903 199451 . + . ID=Physo133083.1;Parent=Physo133083;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_24 . repeat_region 200073 200102 . ? . description=trf scaffold_24 . repeat_region 206759 206847 . ? . description=trf scaffold_24 ensembl protein_coding_gene 201260 202475 . - . ID=Physo108678;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240009;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 201260 202475 . - . ID=Physo108678;Parent=Physo108678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 201260 202333 . - 0 ID=Physo108678;Parent=Physo108678;rank=2 scaffold_24 . exon 201260 202333 . - . ID=Physo108678.2;Parent=Physo108678;constitutive=1;rank=2 scaffold_24 . CDS 202365 202475 . - 0 ID=Physo108678;Parent=Physo108678;rank=1 scaffold_24 . exon 202365 202475 . - . ID=Physo108678.1;Parent=Physo108678;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 200267 201116 . + . ID=Physo133084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240053;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 200267 201116 . + . ID=Physo133084;Parent=Physo133084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 200267 201116 . + . ID=Physo133084.1;Parent=Physo133084;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 200271 201116 . + 0 ID=Physo133084;Parent=Physo133084;rank=1 scaffold_24 . biological_region 211888 211889 0.999 + . logic_name=eponine scaffold_24 . biological_region 211897 211902 0.999 + . logic_name=eponine scaffold_24 . repeat_region 215526 215533 . ? . description=dust scaffold_24 ensembl protein_coding_gene 214567 215391 . + . ID=Physo133086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240055;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 214567 215391 . + . ID=Physo133086;Parent=Physo133086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 214567 215391 . + 0 ID=Physo133086;Parent=Physo133086;rank=1 scaffold_24 . exon 214567 215391 . + . ID=Physo133086.1;Parent=Physo133086;constitutive=1;rank=1 scaffold_24 . repeat_region 222481 222541 . ? . description=trf scaffold_24 . repeat_region 223361 223386 . ? . description=trf scaffold_24 ensembl protein_coding_gene 222863 223663 . + . ID=Physo133087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240056;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 222863 223663 . + . ID=Physo133087;Parent=Physo133087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 222863 223224 . + 0 ID=Physo133087;Parent=Physo133087;rank=1 scaffold_24 . exon 222863 223224 . + . ID=Physo133087.1;Parent=Physo133087;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 223390 223663 . + 0 ID=Physo133087;Parent=Physo133087;rank=2 scaffold_24 . exon 223390 223663 . + . ID=Physo133087.2;Parent=Physo133087;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . biological_region 232444 232446 0.999 - . logic_name=eponine scaffold_24 . biological_region 236282 236287 0.999 + . logic_name=eponine scaffold_24 . biological_region 236719 236721 0.999 + . logic_name=eponine scaffold_24 . repeat_region 236721 236780 . ? . description=dust scaffold_24 . biological_region 236732 236735 0.999 + . logic_name=eponine scaffold_24 . repeat_region 236822 236879 . ? . description=dust scaffold_24 . biological_region 236882 236891 0.999 - . logic_name=eponine scaffold_24 . repeat_region 236968 236986 . ? . description=dust scaffold_24 ensembl protein_coding_gene 236234 236915 . + . ID=Physo108679;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240010;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 236234 236915 . + . ID=Physo108679;Parent=Physo108679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 236234 236354 . + 0 ID=Physo108679;Parent=Physo108679;rank=1 scaffold_24 . exon 236234 236354 . + . ID=Physo108679.1;Parent=Physo108679;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 236437 236915 . + 0 ID=Physo108679;Parent=Physo108679;rank=2 scaffold_24 . exon 236437 236915 . + . ID=Physo108679.2;Parent=Physo108679;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 237903 238683 . + . ID=Physo108680;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240011;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 237903 238683 . + . ID=Physo108680;Parent=Physo108680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 237903 238105 . + . ID=Physo108680.1;Parent=Physo108680;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 237964 238105 . + 0 ID=Physo108680;Parent=Physo108680;rank=1 scaffold_24 . CDS 238202 238512 . + 0 ID=Physo108680;Parent=Physo108680;rank=2 scaffold_24 . exon 238202 238683 . + . ID=Physo108680.2;Parent=Physo108680;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 236977 237714 . - . ID=Physo115281;biotype=protein_coding;external_name=estExt_Genewise1.C_240218;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 236977 237714 . - . ID=Physo115281;Parent=Physo115281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 236977 237377 . - . ID=Physo115281.2;Parent=Physo115281;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_24 . CDS 237327 237377 . - 0 ID=Physo115281;Parent=Physo115281;rank=2 scaffold_24 . CDS 237490 237669 . - 0 ID=Physo115281;Parent=Physo115281;rank=1 scaffold_24 . exon 237490 237714 . - . ID=Physo115281.1;Parent=Physo115281;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 229345 230223 . - . ID=Physo133088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240057;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 229345 230223 . - . ID=Physo133088;Parent=Physo133088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 229345 230223 . - 0 ID=Physo133088;Parent=Physo133088;rank=1 scaffold_24 . exon 229345 230223 . - . ID=Physo133088.1;Parent=Physo133088;constitutive=1;rank=1 scaffold_24 . repeat_region 249031 249082 . ? . description=trf scaffold_24 ensembl protein_coding_gene 239270 241856 . + . ID=Physo133091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240060;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 239270 241856 . + . ID=Physo133091;Parent=Physo133091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 239270 239757 . + 0 ID=Physo133091;Parent=Physo133091;rank=1 scaffold_24 . exon 239270 239757 . + . ID=Physo133091.1;Parent=Physo133091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 239834 241856 . + 0 ID=Physo133091;Parent=Physo133091;rank=2 scaffold_24 . exon 239834 241856 . + . ID=Physo133091.2;Parent=Physo133091;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 ensembl protein_coding_gene 241983 242652 . - . ID=Physo133092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240061;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 241983 242652 . - . ID=Physo133092;Parent=Physo133092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 241983 242448 . - . ID=Physo133092.2;Parent=Physo133092;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_24 . CDS 242113 242448 . - 0 ID=Physo133092;Parent=Physo133092;rank=2 scaffold_24 . CDS 242589 242615 . - 0 ID=Physo133092;Parent=Physo133092;rank=1 scaffold_24 . exon 242589 242652 . - . ID=Physo133092.1;Parent=Physo133092;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 246531 247578 . - . ID=Physo133093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240062;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 246531 247578 . - . ID=Physo133093;Parent=Physo133093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 246531 247578 . - . ID=Physo133093.1;Parent=Physo133093;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 246590 247576 . - 0 ID=Physo133093;Parent=Physo133093;rank=1 scaffold_24 . biological_region 251727 251728 0.999 + . logic_name=eponine scaffold_24 . biological_region 252813 252814 0.999 + . logic_name=eponine scaffold_24 . repeat_region 255013 255025 . ? . description=dust scaffold_24 ensembl protein_coding_gene 251260 254876 . + . ID=Physo133094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240063;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 251260 254876 . + . ID=Physo133094;Parent=Physo133094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 251260 251262 . + 0 ID=Physo133094;Parent=Physo133094;rank=1 scaffold_24 . exon 251260 251262 . + . ID=Physo133094.1;Parent=Physo133094;constitutive=1;rank=1 scaffold_24 . CDS 251342 251476 . + 0 ID=Physo133094;Parent=Physo133094;rank=2 scaffold_24 . exon 251342 251476 . + . ID=Physo133094.2;Parent=Physo133094;constitutive=1;rank=2 scaffold_24 . CDS 251561 252245 . + 0 ID=Physo133094;Parent=Physo133094;rank=3 scaffold_24 . exon 251561 252245 . + . ID=Physo133094.3;Parent=Physo133094;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_24 . CDS 252554 253480 . + 0 ID=Physo133094;Parent=Physo133094;rank=4 scaffold_24 . exon 252554 253480 . + . ID=Physo133094.4;Parent=Physo133094;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 253627 253659 . + 0 ID=Physo133094;Parent=Physo133094;rank=5 scaffold_24 . exon 253627 253659 . + . ID=Physo133094.5;Parent=Physo133094;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 253957 254876 . + 0 ID=Physo133094;Parent=Physo133094;rank=6 scaffold_24 . exon 253957 254876 . + . ID=Physo133094.6;Parent=Physo133094;constitutive=1;ensembl_phase=1;rank=6 scaffold_24 ensembl protein_coding_gene 255185 256258 . - . ID=Physo133095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240064;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 255185 256258 . - . ID=Physo133095;Parent=Physo133095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 255185 256258 . - 0 ID=Physo133095;Parent=Physo133095;rank=1 scaffold_24 . exon 255185 256258 . - . ID=Physo133095.1;Parent=Physo133095;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 256759 262399 . - . ID=Physo133096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240065;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 256759 262399 . - . ID=Physo133096;Parent=Physo133096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 256759 258341 . - 0 ID=Physo133096;Parent=Physo133096;rank=3 scaffold_24 . exon 256759 258341 . - . ID=Physo133096.3;Parent=Physo133096;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 258395 261189 . - 0 ID=Physo133096;Parent=Physo133096;rank=2 scaffold_24 . exon 258395 261189 . - . ID=Physo133096.2;Parent=Physo133096;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 261495 262399 . - 0 ID=Physo133096;Parent=Physo133096;rank=1 scaffold_24 . repeat_region 260974 261006 . ? . description=trf scaffold_24 . repeat_region 265430 265708 . ? . description=trf scaffold_24 . repeat_region 265437 265501 . ? . description=trf scaffold_24 . repeat_region 265519 265618 . ? . description=trf scaffold_24 . repeat_region 265546 265771 . ? . description=trf scaffold_24 . repeat_region 265636 265708 . ? . description=trf scaffold_24 . exon 261495 262399 . - . ID=Physo133096.1;Parent=Physo133096;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 266896 269451 . + . ID=Physo133097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240066;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 266896 269451 . + . ID=Physo133097;Parent=Physo133097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 266896 267260 . + 0 ID=Physo133097;Parent=Physo133097;rank=1 scaffold_24 . exon 266896 267260 . + . ID=Physo133097.1;Parent=Physo133097;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 267445 267752 . + 0 ID=Physo133097;Parent=Physo133097;rank=2 scaffold_24 . exon 267445 267752 . + . ID=Physo133097.2;Parent=Physo133097;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 267980 268079 . + 0 ID=Physo133097;Parent=Physo133097;rank=3 scaffold_24 . exon 267980 268079 . + . ID=Physo133097.3;Parent=Physo133097;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_24 . CDS 268148 268539 . + 0 ID=Physo133097;Parent=Physo133097;rank=4 scaffold_24 . exon 268148 268539 . + . ID=Physo133097.4;Parent=Physo133097;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 268626 268753 . + 0 ID=Physo133097;Parent=Physo133097;rank=5 scaffold_24 . exon 268626 268753 . + . ID=Physo133097.5;Parent=Physo133097;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 268875 269165 . + 0 ID=Physo133097;Parent=Physo133097;rank=6 scaffold_24 . exon 268875 269451 . + . ID=Physo133097.6;Parent=Physo133097;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_24 . biological_region 269134 269138 0.999 - . logic_name=eponine scaffold_24 . biological_region 269417 269418 0.999 - . logic_name=eponine scaffold_24 . biological_region 269651 269656 0.999 + . logic_name=eponine scaffold_24 . biological_region 269695 269700 0.999 + . logic_name=eponine scaffold_24 . biological_region 269735 269738 0.999 - . logic_name=eponine scaffold_24 . biological_region 269848 269851 0.999 + . logic_name=eponine scaffold_24 . biological_region 270600 270600 0.999 - . logic_name=eponine scaffold_24 . biological_region 273456 273456 0.999 + . logic_name=eponine scaffold_24 . biological_region 273495 273498 0.999 + . logic_name=eponine scaffold_24 . biological_region 273542 273545 0.999 - . logic_name=eponine scaffold_24 . biological_region 273550 273555 0.999 - . logic_name=eponine scaffold_24 . biological_region 273727 273727 0.999 + . logic_name=eponine scaffold_24 . biological_region 273765 273766 0.999 - . logic_name=eponine scaffold_24 . biological_region 273947 273951 0.999 - . logic_name=eponine scaffold_24 . biological_region 274108 274111 0.999 - . logic_name=eponine scaffold_24 . biological_region 274708 274709 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 269655 271363 . + . ID=Physo133098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240067;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 269655 271363 . + . ID=Physo133098;Parent=Physo133098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 269655 271363 . + . ID=Physo133098.1;Parent=Physo133098;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 269839 271161 . + 0 ID=Physo133098;Parent=Physo133098;rank=1 scaffold_24 ensembl protein_coding_gene 273047 273403 . - . ID=Physo156634;biotype=protein_coding;external_name=C_scaffold_24000012;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 273047 273403 . - . ID=Physo156634;Parent=Physo156634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 273047 273403 . - 0 ID=Physo156634;Parent=Physo156634;rank=1 scaffold_24 . exon 273047 273403 . - . ID=Physo156634.1;Parent=Physo156634;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 273712 279921 . + . ID=Physo156635;biotype=protein_coding;external_name=C_scaffold_24000013;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 273712 279921 . + . ID=Physo156635;Parent=Physo156635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 273712 274803 . + 0 ID=Physo156635;Parent=Physo156635;rank=1 scaffold_24 . exon 273712 274803 . + . ID=Physo156635.1;Parent=Physo156635;constitutive=1;rank=1 scaffold_24 . CDS 274987 275743 . + 0 ID=Physo156635;Parent=Physo156635;rank=2 scaffold_24 . exon 274987 275743 . + . ID=Physo156635.2;Parent=Physo156635;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 275829 275881 . + 0 ID=Physo156635;Parent=Physo156635;rank=3 scaffold_24 . exon 275829 275881 . + . ID=Physo156635.3;Parent=Physo156635;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 275911 276064 . + 0 ID=Physo156635;Parent=Physo156635;rank=4 scaffold_24 . exon 275911 276064 . + . ID=Physo156635.4;Parent=Physo156635;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_24 . CDS 276338 276651 . + 0 ID=Physo156635;Parent=Physo156635;rank=5 scaffold_24 . exon 276338 276651 . + . ID=Physo156635.5;Parent=Physo156635;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 276814 277366 . + 0 ID=Physo156635;Parent=Physo156635;rank=6 scaffold_24 . exon 276814 277366 . + . ID=Physo156635.6;Parent=Physo156635;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_24 . CDS 277428 277443 . + 0 ID=Physo156635;Parent=Physo156635;rank=7 scaffold_24 . exon 277428 277443 . + . ID=Physo156635.7;Parent=Physo156635;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_24 . CDS 277506 278439 . + 0 ID=Physo156635;Parent=Physo156635;rank=8 scaffold_24 . exon 277506 278439 . + . ID=Physo156635.8;Parent=Physo156635;constitutive=1;ensembl_phase=2;rank=8 scaffold_24 . CDS 278602 278986 . + 0 ID=Physo156635;Parent=Physo156635;rank=9 scaffold_24 . exon 278602 278986 . + . ID=Physo156635.9;Parent=Physo156635;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_24 . CDS 279050 279213 . + 0 ID=Physo156635;Parent=Physo156635;rank=10 scaffold_24 . exon 279050 279213 . + . ID=Physo156635.10;Parent=Physo156635;constitutive=1;ensembl_phase=1;rank=10 scaffold_24 . CDS 279244 279921 . + 0 ID=Physo156635;Parent=Physo156635;rank=11 scaffold_24 . repeat_region 283030 283037 . ? . description=dust scaffold_24 . repeat_region 288237 288343 . ? . description=trf scaffold_24 ensembl protein_coding_gene 284151 285307 . + . ID=Physo133101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240070;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 284151 285307 . + . ID=Physo133101;Parent=Physo133101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 284151 284425 . + . ID=Physo133101.1;Parent=Physo133101;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_24 . CDS 284181 284425 . + 0 ID=Physo133101;Parent=Physo133101;rank=1 scaffold_24 . CDS 284493 284729 . + 0 ID=Physo133101;Parent=Physo133101;rank=2 scaffold_24 . exon 284493 284729 . + . ID=Physo133101.2;Parent=Physo133101;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 284774 284852 . + 0 ID=Physo133101;Parent=Physo133101;rank=3 scaffold_24 . exon 284774 284852 . + . ID=Physo133101.3;Parent=Physo133101;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 284920 285306 . + 0 ID=Physo133101;Parent=Physo133101;rank=4 scaffold_24 . exon 284920 285307 . + . ID=Physo133101.4;Parent=Physo133101;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_24 ensembl protein_coding_gene 285634 289545 . - . ID=Physo133102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240071;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 285634 289545 . - . ID=Physo133102;Parent=Physo133102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 285634 285686 . - 0 ID=Physo133102;Parent=Physo133102;rank=10 scaffold_24 . exon 285634 285686 . - . ID=Physo133102.10;Parent=Physo133102;constitutive=1;ensembl_phase=1;rank=10 scaffold_24 . CDS 285742 286999 . - 0 ID=Physo133102;Parent=Physo133102;rank=9 scaffold_24 . exon 285742 286999 . - . ID=Physo133102.9;Parent=Physo133102;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_24 . CDS 287356 287431 . - 0 ID=Physo133102;Parent=Physo133102;rank=8 scaffold_24 . exon 287356 287431 . - . ID=Physo133102.8;Parent=Physo133102;constitutive=1;ensembl_phase=2;rank=8 scaffold_24 . CDS 287606 288028 . - 0 ID=Physo133102;Parent=Physo133102;rank=7 scaffold_24 . exon 287606 288028 . - . ID=Physo133102.7;Parent=Physo133102;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_24 . CDS 288137 288728 . - 0 ID=Physo133102;Parent=Physo133102;rank=6 scaffold_24 . exon 288137 288728 . - . ID=Physo133102.6;Parent=Physo133102;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_24 . CDS 288789 288822 . - 0 ID=Physo133102;Parent=Physo133102;rank=5 scaffold_24 . exon 288789 288822 . - . ID=Physo133102.5;Parent=Physo133102;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_24 . CDS 289072 289087 . - 0 ID=Physo133102;Parent=Physo133102;rank=4 scaffold_24 . exon 289072 289087 . - . ID=Physo133102.4;Parent=Physo133102;constitutive=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 289229 289285 . - 0 ID=Physo133102;Parent=Physo133102;rank=3 scaffold_24 . CDS 289350 289469 . - 0 ID=Physo133102;Parent=Physo133102;rank=2 scaffold_24 . CDS 289523 289545 . - 0 ID=Physo133102;Parent=Physo133102;rank=1 scaffold_24 . exon 279244 279921 . + . ID=Physo156635.11;Parent=Physo156635;constitutive=1;rank=11 scaffold_24 . repeat_region 295491 296682 . + . description=Gypsy-2-I_PI-int scaffold_24 . biological_region 297374 297379 0.999 + . logic_name=eponine scaffold_24 . exon 289229 289285 . - . ID=Physo133102.3;Parent=Physo133102;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . exon 289350 289469 . - . ID=Physo133102.2;Parent=Physo133102;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . exon 289523 289545 . - . ID=Physo133102.1;Parent=Physo133102;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . repeat_region 299298 308389 . ? . description=dust scaffold_24 . repeat_region 308868 308888 . ? . description=trf scaffold_24 . biological_region 309193 309195 0.999 - . logic_name=eponine scaffold_24 . biological_region 309222 309223 0.999 - . logic_name=eponine scaffold_24 . biological_region 309262 309266 0.999 - . logic_name=eponine scaffold_24 . biological_region 311916 311917 0.999 + . logic_name=eponine scaffold_24 . biological_region 311946 311953 0.999 + . logic_name=eponine scaffold_24 . biological_region 312044 312051 0.999 - . logic_name=eponine scaffold_24 . biological_region 313837 313840 0.999 + . logic_name=eponine scaffold_24 . biological_region 313866 313867 0.999 + . logic_name=eponine scaffold_24 . biological_region 313997 313998 0.999 + . logic_name=eponine scaffold_24 . biological_region 314062 314062 0.999 - . logic_name=eponine scaffold_24 . biological_region 314091 314098 0.999 - . logic_name=eponine scaffold_24 . biological_region 314114 314118 0.999 - . logic_name=eponine scaffold_24 . biological_region 316012 316012 0.999 + . logic_name=eponine scaffold_24 . biological_region 317105 317105 0.999 - . logic_name=eponine scaffold_24 . biological_region 317128 317130 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 310202 311566 . + . ID=Physo133103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240072;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 310202 311566 . + . ID=Physo133103;Parent=Physo133103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 310202 310515 . + 0 ID=Physo133103;Parent=Physo133103;rank=1 scaffold_24 . exon 310202 310515 . + . ID=Physo133103.1;Parent=Physo133103;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 310784 310877 . + 0 ID=Physo133103;Parent=Physo133103;rank=2 scaffold_24 . exon 310784 310877 . + . ID=Physo133103.2;Parent=Physo133103;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 311018 311566 . + 0 ID=Physo133103;Parent=Physo133103;rank=3 scaffold_24 . exon 311018 311566 . + . ID=Physo133103.3;Parent=Physo133103;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 311855 314254 . - . ID=Physo133104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240073;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 311855 314254 . - . ID=Physo133104;Parent=Physo133104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 311855 312331 . - 0 ID=Physo133104;Parent=Physo133104;rank=4 scaffold_24 . exon 311855 312331 . - . ID=Physo133104.4;Parent=Physo133104;constitutive=1;rank=4 scaffold_24 . CDS 312363 312521 . - 0 ID=Physo133104;Parent=Physo133104;rank=3 scaffold_24 . exon 312363 312521 . - . ID=Physo133104.3;Parent=Physo133104;constitutive=1;rank=3 scaffold_24 . CDS 312827 312899 . - 0 ID=Physo133104;Parent=Physo133104;rank=2 scaffold_24 . exon 312827 312899 . - . ID=Physo133104.2;Parent=Physo133104;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 313050 314254 . - 0 ID=Physo133104;Parent=Physo133104;rank=1 scaffold_24 . exon 313050 314254 . - . ID=Physo133104.1;Parent=Physo133104;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 315848 317970 . + . ID=Physo133105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240074;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 315848 317970 . + . ID=Physo133105;Parent=Physo133105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 315848 316600 . + 0 ID=Physo133105;Parent=Physo133105;rank=1 scaffold_24 . exon 315848 316600 . + . ID=Physo133105.1;Parent=Physo133105;constitutive=1;rank=1 scaffold_24 . CDS 316670 316842 . + 0 ID=Physo133105;Parent=Physo133105;rank=2 scaffold_24 . exon 316670 316842 . + . ID=Physo133105.2;Parent=Physo133105;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_24 . CDS 316874 317181 . + 0 ID=Physo133105;Parent=Physo133105;rank=3 scaffold_24 . exon 316874 317181 . + . ID=Physo133105.3;Parent=Physo133105;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 317212 317249 . + 0 ID=Physo133105;Parent=Physo133105;rank=4 scaffold_24 . exon 317212 317249 . + . ID=Physo133105.4;Parent=Physo133105;constitutive=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 317494 317536 . + 0 ID=Physo133105;Parent=Physo133105;rank=5 scaffold_24 . exon 317494 317536 . + . ID=Physo133105.5;Parent=Physo133105;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_24 . CDS 317675 317970 . + 0 ID=Physo133105;Parent=Physo133105;rank=6 scaffold_24 . exon 317675 317970 . + . ID=Physo133105.6;Parent=Physo133105;constitutive=1;ensembl_phase=1;rank=6 scaffold_24 . repeat_region 321953 321960 . ? . description=dust scaffold_24 . repeat_region 325613 325625 . ? . description=dust scaffold_24 . repeat_region 328766 328800 . ? . description=dust scaffold_24 ensembl protein_coding_gene 322269 323617 . + . ID=Physo133106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240075;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 322269 323617 . + . ID=Physo133106;Parent=Physo133106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 322269 323303 . + 0 ID=Physo133106;Parent=Physo133106;rank=1 scaffold_24 . exon 322269 323303 . + . ID=Physo133106.1;Parent=Physo133106;constitutive=1;rank=1 scaffold_24 . CDS 323390 323617 . + 0 ID=Physo133106;Parent=Physo133106;rank=2 scaffold_24 . exon 323390 323617 . + . ID=Physo133106.2;Parent=Physo133106;constitutive=1;rank=2 scaffold_24 . biological_region 333577 333580 0.999 - . logic_name=eponine scaffold_24 . repeat_region 337860 337950 . ? . description=trf scaffold_24 ensembl rRNA_gene 329187 329303 . + . ID=EPrPSOG00000000128;biotype=rRNA;description=8s_rRNA [Source:RNAMMER%3BAcc:8s_rRNA];external_name=8s_rRNA;logic_name=ncrna_eg scaffold_24 ensembl rRNA 329187 329303 . + . ID=EPrPSOT00000000128;Parent=EPrPSOG00000000128;biotype=rRNA;logic_name=ncrna_eg scaffold_24 . exon 329187 329303 . + . ID=EPrPSOE00000000128;Parent=EPrPSOT00000000128;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 333408 333792 . + . ID=Physo156636;biotype=protein_coding;external_name=C_scaffold_24000014;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 333408 333792 . + . ID=Physo156636;Parent=Physo156636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 333408 333688 . + 0 ID=Physo156636;Parent=Physo156636;rank=1 scaffold_24 . exon 333408 333688 . + . ID=Physo156636.1;Parent=Physo156636;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 333771 333792 . + 0 ID=Physo156636;Parent=Physo156636;rank=2 scaffold_24 . exon 333771 333792 . + . ID=Physo156636.2;Parent=Physo156636;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . repeat_region 344708 346022 . + . description=GypsyPi-1c_I-int scaffold_24 . repeat_region 346622 349478 . + . description=GypsyPi-1c_I-int scaffold_24 ensembl protein_coding_gene 345713 349104 . + . ID=Physo133108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240077;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 345713 349104 . + . ID=Physo133108;Parent=Physo133108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 345713 345829 . + 0 ID=Physo133108;Parent=Physo133108;rank=1 scaffold_24 . exon 345713 345829 . + . ID=Physo133108.1;Parent=Physo133108;constitutive=1;rank=1 scaffold_24 . CDS 346040 346828 . + 0 ID=Physo133108;Parent=Physo133108;rank=2 scaffold_24 . exon 346040 346828 . + . ID=Physo133108.2;Parent=Physo133108;constitutive=1;rank=2 scaffold_24 . CDS 346967 347014 . + 0 ID=Physo133108;Parent=Physo133108;rank=3 scaffold_24 . exon 346967 347014 . + . ID=Physo133108.3;Parent=Physo133108;constitutive=1;rank=3 scaffold_24 . CDS 347514 347775 . + 0 ID=Physo133108;Parent=Physo133108;rank=4 scaffold_24 . exon 347514 347775 . + . ID=Physo133108.4;Parent=Physo133108;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_24 . CDS 348149 349104 . + 0 ID=Physo133108;Parent=Physo133108;rank=5 scaffold_24 . exon 348149 349104 . + . ID=Physo133108.5;Parent=Physo133108;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 . biological_region 350250 350251 0.999 + . logic_name=eponine scaffold_24 . biological_region 350714 350715 0.999 + . logic_name=eponine scaffold_24 . biological_region 350995 350997 0.999 - . logic_name=eponine scaffold_24 . biological_region 351005 351012 0.999 + . logic_name=eponine scaffold_24 . biological_region 351072 351077 0.999 + . logic_name=eponine scaffold_24 . biological_region 351098 351101 0.999 + . logic_name=eponine scaffold_24 . biological_region 351119 351126 0.999 + . logic_name=eponine scaffold_24 . repeat_region 351163 351203 . ? . description=trf scaffold_24 . biological_region 351383 351386 0.999 + . logic_name=eponine scaffold_24 . repeat_region 353060 353365 . + . description=GypsyPi-1c_LTR scaffold_24 . repeat_region 354780 354829 . ? . description=trf scaffold_24 . repeat_region 354786 354836 . ? . description=trf scaffold_24 . repeat_region 355333 355569 . ? . description=trf scaffold_24 . biological_region 355816 355817 0.999 + . logic_name=eponine scaffold_24 . biological_region 357013 357013 0.999 + . logic_name=eponine scaffold_24 . repeat_region 357094 357143 . ? . description=trf scaffold_24 . repeat_region 358035 358340 . + . description=GypsyPi-1c_LTR scaffold_24 ensembl protein_coding_gene 349576 351281 . - . ID=Physo133109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240078;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 349576 351281 . - . ID=Physo133109;Parent=Physo133109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 349576 350000 . - 0 ID=Physo133109;Parent=Physo133109;rank=3 scaffold_24 . exon 349576 350000 . - . ID=Physo133109.3;Parent=Physo133109;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 350268 350908 . - 0 ID=Physo133109;Parent=Physo133109;rank=2 scaffold_24 . exon 350268 350908 . - . ID=Physo133109.2;Parent=Physo133109;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 350932 351281 . - 0 ID=Physo133109;Parent=Physo133109;rank=1 scaffold_24 . exon 350932 351281 . - . ID=Physo133109.1;Parent=Physo133109;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 353453 354418 . + . ID=Physo133110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240079;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 353453 354418 . + . ID=Physo133110;Parent=Physo133110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 353453 354418 . + 0 ID=Physo133110;Parent=Physo133110;rank=1 scaffold_24 . exon 353453 354418 . + . ID=Physo133110.1;Parent=Physo133110;constitutive=1;rank=1 scaffold_24 . repeat_region 364068 364075 . ? . description=dust scaffold_24 . repeat_region 365224 365252 . ? . description=dust scaffold_24 ensembl protein_coding_gene 367114 371344 . - . ID=Physo156637;biotype=protein_coding;external_name=C_scaffold_24000015;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 367114 371344 . - . ID=Physo156637;Parent=Physo156637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 367114 367119 . - 0 ID=Physo156637;Parent=Physo156637;rank=13 scaffold_24 . exon 367114 367119 . - . ID=Physo156637.13;Parent=Physo156637;constitutive=1;rank=13 scaffold_24 . CDS 367221 367576 . - 0 ID=Physo156637;Parent=Physo156637;rank=12 scaffold_24 . exon 367221 367576 . - . ID=Physo156637.12;Parent=Physo156637;constitutive=1;ensembl_phase=1;rank=12 scaffold_24 . CDS 367725 367726 . - 0 ID=Physo156637;Parent=Physo156637;rank=11 scaffold_24 . exon 367725 367726 . - . ID=Physo156637.11;Parent=Physo156637;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_24 . CDS 367942 368005 . - 0 ID=Physo156637;Parent=Physo156637;rank=10 scaffold_24 . exon 367942 368005 . - . ID=Physo156637.10;Parent=Physo156637;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_24 . CDS 368399 368482 . - 0 ID=Physo156637;Parent=Physo156637;rank=9 scaffold_24 . exon 368399 368482 . - . ID=Physo156637.9;Parent=Physo156637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_24 . CDS 368558 368618 . - 0 ID=Physo156637;Parent=Physo156637;rank=8 scaffold_24 . exon 368558 368618 . - . ID=Physo156637.8;Parent=Physo156637;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_24 . CDS 368733 368813 . - 0 ID=Physo156637;Parent=Physo156637;rank=7 scaffold_24 . exon 368733 368813 . - . ID=Physo156637.7;Parent=Physo156637;constitutive=1;rank=7 scaffold_24 . CDS 368888 368942 . - 0 ID=Physo156637;Parent=Physo156637;rank=6 scaffold_24 . CDS 369021 369385 . - 0 ID=Physo156637;Parent=Physo156637;rank=5 scaffold_24 . CDS 369644 369973 . - 0 ID=Physo156637;Parent=Physo156637;rank=4 scaffold_24 . CDS 370052 370245 . - 0 ID=Physo156637;Parent=Physo156637;rank=3 scaffold_24 . CDS 370318 370674 . - 0 ID=Physo156637;Parent=Physo156637;rank=2 scaffold_24 . CDS 371083 371344 . - 0 ID=Physo156637;Parent=Physo156637;rank=1 scaffold_24 . exon 368888 368942 . - . ID=Physo156637.6;Parent=Physo156637;constitutive=1;ensembl_phase=2;rank=6 scaffold_24 . exon 369021 369385 . - . ID=Physo156637.5;Parent=Physo156637;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_24 . exon 369644 369973 . - . ID=Physo156637.4;Parent=Physo156637;constitutive=1;rank=4 scaffold_24 . exon 370052 370245 . - . ID=Physo156637.3;Parent=Physo156637;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . exon 370318 370674 . - . ID=Physo156637.2;Parent=Physo156637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . exon 371083 371344 . - . ID=Physo156637.1;Parent=Physo156637;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 382554 382765 . ? . description=trf scaffold_24 . repeat_region 384315 384322 . ? . description=dust scaffold_24 . repeat_region 385130 385473 . ? . description=dust scaffold_24 ensembl protein_coding_gene 383000 383266 . + . ID=Physo115065;biotype=protein_coding;external_name=estExt_Genewise1.C_240002;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 383000 383266 . + . ID=Physo115065;Parent=Physo115065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 383000 383266 . + . ID=Physo115065.1;Parent=Physo115065;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 383039 383266 . + 0 ID=Physo115065;Parent=Physo115065;rank=1 scaffold_24 ensembl tRNA_gene 389020 389091 . + . ID=EPrPSOG00000000108;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_24 ensembl transcript 389020 389091 . + . ID=EPrPSOT00000000108;Parent=EPrPSOG00000000108;biotype=tRNA;logic_name=ncrna_eg scaffold_24 . exon 389020 389091 . + . ID=EPrPSOE00000000108;Parent=EPrPSOT00000000108;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 389400 390890 . - . ID=Physo133113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240082;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 389400 390890 . - . ID=Physo133113;Parent=Physo133113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 389400 389603 . - 0 ID=Physo133113;Parent=Physo133113;rank=2 scaffold_24 . exon 389400 389603 . - . ID=Physo133113.2;Parent=Physo133113;constitutive=1;rank=2 scaffold_24 . CDS 389646 390890 . - 0 ID=Physo133113;Parent=Physo133113;rank=1 scaffold_24 . exon 389646 390890 . - . ID=Physo133113.1;Parent=Physo133113;constitutive=1;rank=1 scaffold_24 . repeat_region 398913 398962 . ? . description=dust scaffold_24 . repeat_region 400067 400139 . ? . description=trf scaffold_24 ensembl protein_coding_gene 407241 407700 . + . ID=Physo133114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240083;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 407241 407700 . + . ID=Physo133114;Parent=Physo133114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 407241 407513 . + 0 ID=Physo133114;Parent=Physo133114;rank=1 scaffold_24 . exon 407241 407513 . + . ID=Physo133114.1;Parent=Physo133114;constitutive=1;rank=1 scaffold_24 . CDS 407581 407700 . + 0 ID=Physo133114;Parent=Physo133114;rank=2 scaffold_24 . exon 407581 407700 . + . ID=Physo133114.2;Parent=Physo133114;constitutive=1;rank=2 scaffold_24 . biological_region 409727 409734 0.999 - . logic_name=eponine scaffold_24 . biological_region 413275 413275 0.999 - . logic_name=eponine scaffold_24 . biological_region 414216 414223 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 414054 415040 . + . ID=Physo108681;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240012;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 414054 415040 . + . ID=Physo108681;Parent=Physo108681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 414054 415040 . + 0 ID=Physo108681;Parent=Physo108681;rank=1 scaffold_24 . exon 414054 415040 . + . ID=Physo108681.1;Parent=Physo108681;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 412973 413896 . + . ID=Physo133115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240084;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 412973 413896 . + . ID=Physo133115;Parent=Physo133115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 412973 413896 . + 0 ID=Physo133115;Parent=Physo133115;rank=1 scaffold_24 . exon 412973 413896 . + . ID=Physo133115.1;Parent=Physo133115;constitutive=1;rank=1 scaffold_24 . repeat_region 423371 423397 . ? . description=trf scaffold_24 ensembl protein_coding_gene 422203 422949 . - . ID=Physo133117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240086;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 422203 422949 . - . ID=Physo133117;Parent=Physo133117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 422203 422616 . - 0 ID=Physo133117;Parent=Physo133117;rank=2 scaffold_24 . exon 422203 422616 . - . ID=Physo133117.2;Parent=Physo133117;constitutive=1;rank=2 scaffold_24 . CDS 422707 422949 . - 0 ID=Physo133117;Parent=Physo133117;rank=1 scaffold_24 . exon 422707 422949 . - . ID=Physo133117.1;Parent=Physo133117;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 427152 429218 . - . ID=Physo133120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240089;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 427152 429218 . - . ID=Physo133120;Parent=Physo133120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 427152 429218 . - . ID=Physo133120.1;Parent=Physo133120;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_24 . CDS 427305 429218 . - 0 ID=Physo133120;Parent=Physo133120;rank=1 scaffold_24 ensembl protein_coding_gene 423152 426958 . + . ID=Physo156640;biotype=protein_coding;external_name=C_scaffold_24000018;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 423152 426958 . + . ID=Physo156640;Parent=Physo156640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 423152 424069 . + 0 ID=Physo156640;Parent=Physo156640;rank=1 scaffold_24 . exon 423152 424069 . + . ID=Physo156640.1;Parent=Physo156640;constitutive=1;rank=1 scaffold_24 . CDS 424355 424709 . + 0 ID=Physo156640;Parent=Physo156640;rank=2 scaffold_24 . exon 424355 424709 . + . ID=Physo156640.2;Parent=Physo156640;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 424781 424842 . + 0 ID=Physo156640;Parent=Physo156640;rank=3 scaffold_24 . exon 424781 424842 . + . ID=Physo156640.3;Parent=Physo156640;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 424914 424933 . + 0 ID=Physo156640;Parent=Physo156640;rank=4 scaffold_24 . exon 424914 424933 . + . ID=Physo156640.4;Parent=Physo156640;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_24 . CDS 425047 425237 . + 0 ID=Physo156640;Parent=Physo156640;rank=5 scaffold_24 . exon 425047 425237 . + . ID=Physo156640.5;Parent=Physo156640;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_24 . CDS 425697 425962 . + 0 ID=Physo156640;Parent=Physo156640;rank=6 scaffold_24 . exon 425697 425962 . + . ID=Physo156640.6;Parent=Physo156640;constitutive=1;ensembl_phase=1;rank=6 scaffold_24 . CDS 426227 426958 . + 0 ID=Physo156640;Parent=Physo156640;rank=7 scaffold_24 . exon 426227 426958 . + . ID=Physo156640.7;Parent=Physo156640;constitutive=1;rank=7 scaffold_24 . biological_region 430231 430241 0.999 + . logic_name=eponine scaffold_24 . biological_region 432252 432254 0.999 - . logic_name=eponine scaffold_24 . biological_region 435751 435755 0.999 + . logic_name=eponine scaffold_24 . biological_region 437256 437258 0.999 + . logic_name=eponine scaffold_24 . biological_region 437279 437285 0.999 - . logic_name=eponine scaffold_24 . biological_region 438187 438187 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 430732 432315 . - . ID=Physo133121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240090;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 430732 432315 . - . ID=Physo133121;Parent=Physo133121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 430732 432315 . - 0 ID=Physo133121;Parent=Physo133121;rank=1 scaffold_24 . exon 430732 432315 . - . ID=Physo133121.1;Parent=Physo133121;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 437124 439682 . + . ID=Physo133123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240092;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 437124 439682 . + . ID=Physo133123;Parent=Physo133123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 437124 437350 . + 0 ID=Physo133123;Parent=Physo133123;rank=1 scaffold_24 . exon 437124 437350 . + . ID=Physo133123.1;Parent=Physo133123;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 437428 437529 . + 0 ID=Physo133123;Parent=Physo133123;rank=2 scaffold_24 . exon 437428 437529 . + . ID=Physo133123.2;Parent=Physo133123;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 437603 437679 . + 0 ID=Physo133123;Parent=Physo133123;rank=3 scaffold_24 . exon 437603 437679 . + . ID=Physo133123.3;Parent=Physo133123;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 437768 437878 . + 0 ID=Physo133123;Parent=Physo133123;rank=4 scaffold_24 . exon 437768 437878 . + . ID=Physo133123.4;Parent=Physo133123;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 437949 438114 . + 0 ID=Physo133123;Parent=Physo133123;rank=5 scaffold_24 . exon 437949 438114 . + . ID=Physo133123.5;Parent=Physo133123;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_24 . CDS 438185 438855 . + 0 ID=Physo133123;Parent=Physo133123;rank=6 scaffold_24 . exon 438185 438855 . + . ID=Physo133123.6;Parent=Physo133123;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_24 . CDS 438921 439039 . + 0 ID=Physo133123;Parent=Physo133123;rank=7 scaffold_24 . CDS 439110 439682 . + 0 ID=Physo133123;Parent=Physo133123;rank=8 scaffold_24 ensembl protein_coding_gene 435131 436716 . - . ID=Physo156643;biotype=protein_coding;external_name=C_scaffold_24000021;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 435131 436716 . - . ID=Physo156643;Parent=Physo156643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 435131 436052 . - 0 ID=Physo156643;Parent=Physo156643;rank=3 scaffold_24 . exon 435131 436052 . - . ID=Physo156643.3;Parent=Physo156643;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 436121 436565 . - 0 ID=Physo156643;Parent=Physo156643;rank=2 scaffold_24 . exon 436121 436565 . - . ID=Physo156643.2;Parent=Physo156643;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 436671 436716 . - 0 ID=Physo156643;Parent=Physo156643;rank=1 scaffold_24 . exon 436671 436716 . - . ID=Physo156643.1;Parent=Physo156643;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 444597 444605 . ? . description=dust scaffold_24 . repeat_region 444644 444672 . ? . description=trf scaffold_24 . repeat_region 444670 444698 . ? . description=trf scaffold_24 . repeat_region 444974 444987 . ? . description=dust scaffold_24 . repeat_region 445104 445132 . ? . description=trf scaffold_24 . repeat_region 446308 446329 . ? . description=dust scaffold_24 . repeat_region 446308 446329 . ? . description=trf scaffold_24 ensembl protein_coding_gene 439801 441148 . - . ID=Physo108682;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240013;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 439801 441148 . - . ID=Physo108682;Parent=Physo108682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 439801 439974 . - . ID=Physo108682.7;Parent=Physo108682;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_24 . CDS 439879 439974 . - 0 ID=Physo108682;Parent=Physo108682;rank=7 scaffold_24 . CDS 440044 440082 . - 0 ID=Physo108682;Parent=Physo108682;rank=6 scaffold_24 . exon 440044 440082 . - . ID=Physo108682.6;Parent=Physo108682;constitutive=1;rank=6 scaffold_24 . CDS 440145 440216 . - 0 ID=Physo108682;Parent=Physo108682;rank=5 scaffold_24 . exon 440145 440216 . - . ID=Physo108682.5;Parent=Physo108682;constitutive=1;rank=5 scaffold_24 . CDS 440299 440386 . - 0 ID=Physo108682;Parent=Physo108682;rank=4 scaffold_24 . exon 440299 440386 . - . ID=Physo108682.4;Parent=Physo108682;constitutive=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 440457 440691 . - 0 ID=Physo108682;Parent=Physo108682;rank=3 scaffold_24 . exon 440457 440691 . - . ID=Physo108682.3;Parent=Physo108682;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_24 . CDS 440772 440890 . - 0 ID=Physo108682;Parent=Physo108682;rank=2 scaffold_24 . exon 440772 440890 . - . ID=Physo108682.2;Parent=Physo108682;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 440990 441123 . - 0 ID=Physo108682;Parent=Physo108682;rank=1 scaffold_24 . exon 440990 441148 . - . ID=Physo108682.1;Parent=Physo108682;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_24 . exon 438921 439039 . + . ID=Physo133123.7;Parent=Physo133123;constitutive=1;ensembl_phase=1;rank=7 scaffold_24 . exon 439110 439682 . + . ID=Physo133123.8;Parent=Physo133123;constitutive=1;rank=8 scaffold_24 ensembl protein_coding_gene 442309 443195 . + . ID=Physo133125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240094;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 442309 443195 . + . ID=Physo133125;Parent=Physo133125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 442309 442723 . + 0 ID=Physo133125;Parent=Physo133125;rank=1 scaffold_24 . exon 442309 442723 . + . ID=Physo133125.1;Parent=Physo133125;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 442785 442933 . + 0 ID=Physo133125;Parent=Physo133125;rank=2 scaffold_24 . exon 442785 442933 . + . ID=Physo133125.2;Parent=Physo133125;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 442998 443195 . + 0 ID=Physo133125;Parent=Physo133125;rank=3 scaffold_24 . exon 442998 443195 . + . ID=Physo133125.3;Parent=Physo133125;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 446096 447097 . - . ID=Physo133126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240095;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 446096 447097 . - . ID=Physo133126;Parent=Physo133126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 446096 447097 . - . ID=Physo133126.1;Parent=Physo133126;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 446509 446961 . - 0 ID=Physo133126;Parent=Physo133126;rank=1 scaffold_24 ensembl protein_coding_gene 443295 443725 . - . ID=Physo156648;biotype=protein_coding;external_name=C_scaffold_24000026;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 443295 443725 . - . ID=Physo156648;Parent=Physo156648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 443295 443466 . - 0 ID=Physo156648;Parent=Physo156648;rank=3 scaffold_24 . exon 443295 443466 . - . ID=Physo156648.3;Parent=Physo156648;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 443543 443628 . - 0 ID=Physo156648;Parent=Physo156648;rank=2 scaffold_24 . exon 443543 443628 . - . ID=Physo156648.2;Parent=Physo156648;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_24 . CDS 443723 443725 . - 0 ID=Physo156648;Parent=Physo156648;rank=1 scaffold_24 . exon 443723 443725 . - . ID=Physo156648.1;Parent=Physo156648;constitutive=1;rank=1 scaffold_24 . biological_region 449109 449113 0.999 + . logic_name=eponine scaffold_24 . biological_region 449492 449493 0.999 - . logic_name=eponine scaffold_24 . biological_region 449510 449510 0.999 - . logic_name=eponine scaffold_24 . biological_region 449564 449573 0.999 + . logic_name=eponine scaffold_24 . biological_region 450224 450230 0.999 + . logic_name=eponine scaffold_24 . biological_region 450253 450254 0.999 + . logic_name=eponine scaffold_24 . biological_region 450348 450355 0.999 - . logic_name=eponine scaffold_24 . biological_region 450377 450381 0.999 - . logic_name=eponine scaffold_24 . biological_region 450389 450390 0.999 - . logic_name=eponine scaffold_24 . biological_region 450404 450412 0.999 - . logic_name=eponine scaffold_24 . biological_region 450432 450437 0.999 + . logic_name=eponine scaffold_24 . biological_region 450464 450468 0.999 + . logic_name=eponine scaffold_24 . biological_region 450745 450746 0.999 - . logic_name=eponine scaffold_24 . biological_region 450786 450789 0.999 + . logic_name=eponine scaffold_24 . biological_region 450882 450883 0.999 - . logic_name=eponine scaffold_24 . biological_region 453043 453045 0.999 + . logic_name=eponine scaffold_24 . biological_region 453512 453514 0.999 - . logic_name=eponine scaffold_24 . biological_region 454309 454311 0.999 + . logic_name=eponine scaffold_24 . biological_region 454383 454385 0.999 - . logic_name=eponine scaffold_24 . biological_region 455669 455671 0.999 + . logic_name=eponine scaffold_24 . biological_region 455703 455704 0.999 - . logic_name=eponine scaffold_24 . biological_region 455931 455932 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 450227 452095 . + . ID=Physo133127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240096;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 450227 452095 . + . ID=Physo133127;Parent=Physo133127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 450227 452095 . + 0 ID=Physo133127;Parent=Physo133127;rank=1 scaffold_24 . exon 450227 452095 . + . ID=Physo133127.1;Parent=Physo133127;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 452166 453524 . - . ID=Physo133128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240097;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 452166 453524 . - . ID=Physo133128;Parent=Physo133128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 452166 452946 . - 0 ID=Physo133128;Parent=Physo133128;rank=2 scaffold_24 . exon 452166 452946 . - . ID=Physo133128.2;Parent=Physo133128;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 453025 453524 . - 0 ID=Physo133128;Parent=Physo133128;rank=1 scaffold_24 . exon 453025 453524 . - . ID=Physo133128.1;Parent=Physo133128;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 453874 454689 . + . ID=Physo133129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240098;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 453874 454689 . + . ID=Physo133129;Parent=Physo133129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 453874 454689 . + 0 ID=Physo133129;Parent=Physo133129;rank=1 scaffold_24 . exon 453874 454689 . + . ID=Physo133129.1;Parent=Physo133129;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 454846 455763 . - . ID=Physo133130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240099;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 454846 455763 . - . ID=Physo133130;Parent=Physo133130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 454846 455096 . - 0 ID=Physo133130;Parent=Physo133130;rank=3 scaffold_24 . exon 454846 455096 . - . ID=Physo133130.3;Parent=Physo133130;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 455170 455299 . - 0 ID=Physo133130;Parent=Physo133130;rank=2 scaffold_24 . exon 455170 455299 . - . ID=Physo133130.2;Parent=Physo133130;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 455393 455758 . - 0 ID=Physo133130;Parent=Physo133130;rank=1 scaffold_24 . exon 455393 455763 . - . ID=Physo133130.1;Parent=Physo133130;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 457358 457656 . + . ID=Physo156652;biotype=protein_coding;external_name=C_scaffold_24000030;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 457358 457656 . + . ID=Physo156652;Parent=Physo156652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 457358 457622 . + 0 ID=Physo156652;Parent=Physo156652;rank=1 scaffold_24 . exon 457358 457622 . + . ID=Physo156652.1;Parent=Physo156652;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 457646 457656 . + 0 ID=Physo156652;Parent=Physo156652;rank=2 scaffold_24 . exon 457646 457656 . + . ID=Physo156652.2;Parent=Physo156652;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 457777 459368 . - . ID=Physo156653;biotype=protein_coding;external_name=C_scaffold_24000031;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 457777 459368 . - . ID=Physo156653;Parent=Physo156653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 457777 457789 . - 0 ID=Physo156653;Parent=Physo156653;rank=6 scaffold_24 . exon 457777 457789 . - . ID=Physo156653.6;Parent=Physo156653;constitutive=1;ensembl_phase=2;rank=6 scaffold_24 . CDS 457916 458049 . - 0 ID=Physo156653;Parent=Physo156653;rank=5 scaffold_24 . exon 457916 458049 . - . ID=Physo156653.5;Parent=Physo156653;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_24 . CDS 458135 458230 . - 0 ID=Physo156653;Parent=Physo156653;rank=4 scaffold_24 . exon 458135 458230 . - . ID=Physo156653.4;Parent=Physo156653;constitutive=1;rank=4 scaffold_24 . CDS 458292 458343 . - 0 ID=Physo156653;Parent=Physo156653;rank=3 scaffold_24 . exon 458292 458343 . - . ID=Physo156653.3;Parent=Physo156653;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 458539 459189 . - 0 ID=Physo156653;Parent=Physo156653;rank=2 scaffold_24 . CDS 459259 459368 . - 0 ID=Physo156653;Parent=Physo156653;rank=1 scaffold_24 . repeat_region 459693 459719 . ? . description=trf scaffold_24 . repeat_region 461404 461436 . ? . description=trf scaffold_24 . repeat_region 461404 461437 . ? . description=dust scaffold_24 . repeat_region 461404 461437 . ? . description=trf scaffold_24 . repeat_region 462161 462200 . ? . description=trf scaffold_24 . repeat_region 462208 462239 . ? . description=trf scaffold_24 . repeat_region 462236 462281 . ? . description=trf scaffold_24 . repeat_region 462342 462371 . ? . description=trf scaffold_24 . repeat_region 462679 462739 . ? . description=dust scaffold_24 . repeat_region 465545 465618 . ? . description=trf scaffold_24 . repeat_region 465562 465622 . ? . description=dust scaffold_24 . repeat_region 466262 466270 . ? . description=dust scaffold_24 . repeat_region 468015 468104 . ? . description=trf scaffold_24 . repeat_region 468016 468078 . ? . description=dust scaffold_24 . repeat_region 468022 468095 . ? . description=trf scaffold_24 ensembl protein_coding_gene 459737 461758 . - . ID=Physo133132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240101;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 459737 461758 . - . ID=Physo133132;Parent=Physo133132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 459737 461758 . - 0 ID=Physo133132;Parent=Physo133132;rank=1 scaffold_24 . exon 459737 461758 . - . ID=Physo133132.1;Parent=Physo133132;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 462197 462802 . - . ID=Physo133133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240102;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 462197 462802 . - . ID=Physo133133;Parent=Physo133133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 462197 462802 . - 0 ID=Physo133133;Parent=Physo133133;rank=1 scaffold_24 . exon 462197 462802 . - . ID=Physo133133.1;Parent=Physo133133;constitutive=1;rank=1 scaffold_24 . exon 458539 459189 . - . ID=Physo156653.2;Parent=Physo156653;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . exon 459259 459368 . - . ID=Physo156653.1;Parent=Physo156653;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . biological_region 468925 468929 0.999 - . logic_name=eponine scaffold_24 . biological_region 469672 469677 0.999 + . logic_name=eponine scaffold_24 . biological_region 472524 472526 0.999 - . logic_name=eponine scaffold_24 . biological_region 472539 472541 0.999 - . logic_name=eponine scaffold_24 . biological_region 472773 472777 0.999 + . logic_name=eponine scaffold_24 . biological_region 472843 472845 0.999 - . logic_name=eponine scaffold_24 . biological_region 477394 477396 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 472463 473309 . + . ID=Physo108683;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240014;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 472463 473309 . + . ID=Physo108683;Parent=Physo108683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 472463 472830 . + . ID=Physo108683.1;Parent=Physo108683;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_24 . CDS 472511 472830 . + 0 ID=Physo108683;Parent=Physo108683;rank=1 scaffold_24 . CDS 472934 472994 . + 0 ID=Physo108683;Parent=Physo108683;rank=2 scaffold_24 . exon 472934 472994 . + . ID=Physo108683.2;Parent=Physo108683;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 473067 473309 . + 0 ID=Physo108683;Parent=Physo108683;rank=3 scaffold_24 . exon 473067 473309 . + . ID=Physo108683.3;Parent=Physo108683;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 477337 477804 . - . ID=Physo115103;biotype=protein_coding;external_name=estExt_Genewise1.C_240040;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 477337 477804 . - . ID=Physo115103;Parent=Physo115103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 477337 477771 . - 0 ID=Physo115103;Parent=Physo115103;rank=1 scaffold_24 . exon 477337 477804 . - . ID=Physo115103.1;Parent=Physo115103;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 469570 470937 . + . ID=Physo133134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240103;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 469570 470937 . + . ID=Physo133134;Parent=Physo133134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 469570 470937 . + 0 ID=Physo133134;Parent=Physo133134;rank=1 scaffold_24 . exon 469570 470937 . + . ID=Physo133134.1;Parent=Physo133134;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 471090 472286 . - . ID=Physo133135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240104;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 471090 472286 . - . ID=Physo133135;Parent=Physo133135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 471090 471633 . - 0 ID=Physo133135;Parent=Physo133135;rank=3 scaffold_24 . exon 471090 471633 . - . ID=Physo133135.3;Parent=Physo133135;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 471698 471757 . - 0 ID=Physo133135;Parent=Physo133135;rank=2 scaffold_24 . exon 471698 471757 . - . ID=Physo133135.2;Parent=Physo133135;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 471833 472224 . - 0 ID=Physo133135;Parent=Physo133135;rank=1 scaffold_24 . exon 471833 472286 . - . ID=Physo133135.1;Parent=Physo133135;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 473661 474216 . - . ID=Physo133137;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240106;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 473661 474216 . - . ID=Physo133137;Parent=Physo133137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 473661 473849 . - 0 ID=Physo133137;Parent=Physo133137;rank=2 scaffold_24 . exon 473661 473849 . - . ID=Physo133137.2;Parent=Physo133137;constitutive=1;rank=2 scaffold_24 . CDS 473926 474216 . - 0 ID=Physo133137;Parent=Physo133137;rank=1 scaffold_24 . exon 473926 474216 . - . ID=Physo133137.1;Parent=Physo133137;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 474361 476972 . + . ID=Physo133138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240107;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 474361 476972 . + . ID=Physo133138;Parent=Physo133138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 474361 474506 . + 0 ID=Physo133138;Parent=Physo133138;rank=1 scaffold_24 . exon 474361 474506 . + . ID=Physo133138.1;Parent=Physo133138;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 474589 474756 . + 0 ID=Physo133138;Parent=Physo133138;rank=2 scaffold_24 . exon 474589 474756 . + . ID=Physo133138.2;Parent=Physo133138;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 474824 476972 . + 0 ID=Physo133138;Parent=Physo133138;rank=3 scaffold_24 . exon 474824 476972 . + . ID=Physo133138.3;Parent=Physo133138;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 ensembl protein_coding_gene 478413 480665 . + . ID=Physo133140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240109;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 478413 480665 . + . ID=Physo133140;Parent=Physo133140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 478413 478517 . + . ID=Physo133140.1;Parent=Physo133140;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 478419 478517 . + 0 ID=Physo133140;Parent=Physo133140;rank=1 scaffold_24 . CDS 478606 478701 . + 0 ID=Physo133140;Parent=Physo133140;rank=2 scaffold_24 . CDS 478774 479002 . + 0 ID=Physo133140;Parent=Physo133140;rank=3 scaffold_24 . CDS 479098 479170 . + 0 ID=Physo133140;Parent=Physo133140;rank=4 scaffold_24 . CDS 479196 479212 . + 0 ID=Physo133140;Parent=Physo133140;rank=5 scaffold_24 . CDS 479568 480148 . + 0 ID=Physo133140;Parent=Physo133140;rank=6 scaffold_24 . CDS 480216 480359 . + 0 ID=Physo133140;Parent=Physo133140;rank=7 scaffold_24 . CDS 480441 480665 . + 0 ID=Physo133140;Parent=Physo133140;rank=8 scaffold_24 . repeat_region 479013 479067 . ? . description=dust scaffold_24 . repeat_region 485118 485185 . ? . description=trf scaffold_24 . repeat_region 485118 485211 . + . description=(CTG)n scaffold_24 . repeat_region 485127 485211 . ? . description=dust scaffold_24 . repeat_region 487902 487909 . ? . description=dust scaffold_24 . exon 478606 478701 . + . ID=Physo133140.2;Parent=Physo133140;constitutive=1;rank=2 scaffold_24 . exon 478774 479002 . + . ID=Physo133140.3;Parent=Physo133140;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_24 . exon 479098 479170 . + . ID=Physo133140.4;Parent=Physo133140;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_24 . exon 479196 479212 . + . ID=Physo133140.5;Parent=Physo133140;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_24 . exon 479568 480148 . + . ID=Physo133140.6;Parent=Physo133140;constitutive=1;ensembl_phase=1;rank=6 scaffold_24 . exon 480216 480359 . + . ID=Physo133140.7;Parent=Physo133140;constitutive=1;rank=7 scaffold_24 . exon 480441 480665 . + . ID=Physo133140.8;Parent=Physo133140;constitutive=1;rank=8 scaffold_24 ensembl protein_coding_gene 480816 481955 . - . ID=Physo133141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240110;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 480816 481955 . - . ID=Physo133141;Parent=Physo133141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 480816 481955 . - 0 ID=Physo133141;Parent=Physo133141;rank=1 scaffold_24 . exon 480816 481955 . - . ID=Physo133141.1;Parent=Physo133141;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 483092 483837 . + . ID=Physo133142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240111;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 483092 483837 . + . ID=Physo133142;Parent=Physo133142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 483092 483217 . + 0 ID=Physo133142;Parent=Physo133142;rank=1 scaffold_24 . exon 483092 483217 . + . ID=Physo133142.1;Parent=Physo133142;constitutive=1;rank=1 scaffold_24 . CDS 483310 483837 . + 0 ID=Physo133142;Parent=Physo133142;rank=2 scaffold_24 . exon 483310 483837 . + . ID=Physo133142.2;Parent=Physo133142;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 484101 485387 . - . ID=Physo133143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240112;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 484101 485387 . - . ID=Physo133143;Parent=Physo133143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 484101 485387 . - . ID=Physo133143.1;Parent=Physo133143;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_24 . CDS 484212 485387 . - 0 ID=Physo133143;Parent=Physo133143;rank=1 scaffold_24 ensembl protein_coding_gene 488183 489828 . - . ID=Physo133144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240113;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 488183 489828 . - . ID=Physo133144;Parent=Physo133144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 488183 488281 . - 0 ID=Physo133144;Parent=Physo133144;rank=3 scaffold_24 . exon 488183 488281 . - . ID=Physo133144.3;Parent=Physo133144;constitutive=1;rank=3 scaffold_24 . CDS 488365 488518 . - 0 ID=Physo133144;Parent=Physo133144;rank=2 scaffold_24 . exon 488365 488518 . - . ID=Physo133144.2;Parent=Physo133144;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 488591 489828 . - 0 ID=Physo133144;Parent=Physo133144;rank=1 scaffold_24 . biological_region 490272 490276 0.999 + . logic_name=eponine scaffold_24 . biological_region 490310 490313 0.999 - . logic_name=eponine scaffold_24 . biological_region 490346 490347 0.999 + . logic_name=eponine scaffold_24 . biological_region 490370 490374 0.999 - . logic_name=eponine scaffold_24 . biological_region 490823 490823 0.999 - . logic_name=eponine scaffold_24 . biological_region 493980 493986 0.999 - . logic_name=eponine scaffold_24 . biological_region 496224 496230 0.999 - . logic_name=eponine scaffold_24 . exon 488591 489828 . - . ID=Physo133144.1;Parent=Physo133144;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 490245 494143 . + . ID=Physo133145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240114;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 490245 494143 . + . ID=Physo133145;Parent=Physo133145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 490245 491305 . + 0 ID=Physo133145;Parent=Physo133145;rank=1 scaffold_24 . exon 490245 491305 . + . ID=Physo133145.1;Parent=Physo133145;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 491558 492167 . + 0 ID=Physo133145;Parent=Physo133145;rank=2 scaffold_24 . exon 491558 492167 . + . ID=Physo133145.2;Parent=Physo133145;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 492256 492432 . + 0 ID=Physo133145;Parent=Physo133145;rank=3 scaffold_24 . exon 492256 492432 . + . ID=Physo133145.3;Parent=Physo133145;constitutive=1;rank=3 scaffold_24 . CDS 492506 492603 . + 0 ID=Physo133145;Parent=Physo133145;rank=4 scaffold_24 . exon 492506 492603 . + . ID=Physo133145.4;Parent=Physo133145;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_24 . CDS 492706 494143 . + 0 ID=Physo133145;Parent=Physo133145;rank=5 scaffold_24 . exon 492706 494143 . + . ID=Physo133145.5;Parent=Physo133145;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 ensembl protein_coding_gene 497312 499504 . - . ID=Physo133146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240115;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 497312 499504 . - . ID=Physo133146;Parent=Physo133146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 497312 499504 . - 0 ID=Physo133146;Parent=Physo133146;rank=1 scaffold_24 . exon 497312 499504 . - . ID=Physo133146.1;Parent=Physo133146;constitutive=1;rank=1 scaffold_24 . repeat_region 498771 498815 . ? . description=trf scaffold_24 . repeat_region 498792 498835 . ? . description=trf scaffold_24 ensembl protein_coding_gene 499683 501997 . + . ID=Physo108684;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240015;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 499683 501997 . + . ID=Physo108684;Parent=Physo108684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 499683 501932 . + 0 ID=Physo108684;Parent=Physo108684;rank=1 scaffold_24 . exon 499683 501997 . + . ID=Physo108684.1;Parent=Physo108684;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 502107 505182 . - . ID=Physo133148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240117;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 502107 505182 . - . ID=Physo133148;Parent=Physo133148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 502107 502121 . - 0 ID=Physo133148;Parent=Physo133148;rank=3 scaffold_24 . exon 502107 502121 . - . ID=Physo133148.3;Parent=Physo133148;constitutive=1;rank=3 scaffold_24 . CDS 502163 503512 . - 0 ID=Physo133148;Parent=Physo133148;rank=2 scaffold_24 . exon 502163 503512 . - . ID=Physo133148.2;Parent=Physo133148;constitutive=1;rank=2 scaffold_24 . CDS 503781 505157 . - 0 ID=Physo133148;Parent=Physo133148;rank=1 scaffold_24 . exon 503781 505182 . - . ID=Physo133148.1;Parent=Physo133148;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 505998 507149 . + . ID=Physo133149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240118;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 505998 507149 . + . ID=Physo133149;Parent=Physo133149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 505998 507149 . + . ID=Physo133149.1;Parent=Physo133149;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 506223 507149 . + 0 ID=Physo133149;Parent=Physo133149;rank=1 scaffold_24 ensembl protein_coding_gene 507674 508294 . - . ID=Physo133150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240119;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 507674 508294 . - . ID=Physo133150;Parent=Physo133150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 507674 507814 . - 0 ID=Physo133150;Parent=Physo133150;rank=3 scaffold_24 . exon 507674 507814 . - . ID=Physo133150.3;Parent=Physo133150;constitutive=1;rank=3 scaffold_24 . CDS 507906 508057 . - 0 ID=Physo133150;Parent=Physo133150;rank=2 scaffold_24 . exon 507906 508057 . - . ID=Physo133150.2;Parent=Physo133150;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 508156 508294 . - 0 ID=Physo133150;Parent=Physo133150;rank=1 scaffold_24 . exon 508156 508294 . - . ID=Physo133150.1;Parent=Physo133150;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 505343 505621 . + . ID=Physo156657;biotype=protein_coding;external_name=C_scaffold_24000035;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 505343 505621 . + . ID=Physo156657;Parent=Physo156657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 505343 505621 . + 0 ID=Physo156657;Parent=Physo156657;rank=1 scaffold_24 . exon 505343 505621 . + . ID=Physo156657.1;Parent=Physo156657;constitutive=1;rank=1 scaffold_24 . biological_region 509186 509191 0.999 - . logic_name=eponine scaffold_24 . repeat_region 509214 509221 . ? . description=dust scaffold_24 . biological_region 509242 509246 0.999 + . logic_name=eponine scaffold_24 . repeat_region 509553 509604 . ? . description=dust scaffold_24 . biological_region 510018 510019 0.999 - . logic_name=eponine scaffold_24 . biological_region 510147 510148 0.999 - . logic_name=eponine scaffold_24 . repeat_region 511361 511383 . ? . description=dust scaffold_24 . biological_region 512429 512432 0.999 - . logic_name=eponine scaffold_24 . biological_region 513581 513585 0.999 + . logic_name=eponine scaffold_24 . biological_region 513654 513655 0.999 - . logic_name=eponine scaffold_24 . biological_region 514089 514089 0.999 + . logic_name=eponine scaffold_24 . biological_region 515687 515689 0.999 + . logic_name=eponine scaffold_24 . repeat_region 517776 517783 . ? . description=dust scaffold_24 ensembl protein_coding_gene 508541 509619 . + . ID=Physo108685;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240016;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 508541 509619 . + . ID=Physo108685;Parent=Physo108685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 508541 508723 . + . ID=Physo108685.1;Parent=Physo108685;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_24 . CDS 508599 508723 . + 0 ID=Physo108685;Parent=Physo108685;rank=1 scaffold_24 . CDS 508811 508926 . + 0 ID=Physo108685;Parent=Physo108685;rank=2 scaffold_24 . exon 508811 508926 . + . ID=Physo108685.2;Parent=Physo108685;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 508995 509215 . + 0 ID=Physo108685;Parent=Physo108685;rank=3 scaffold_24 . exon 508995 509619 . + . ID=Physo108685.3;Parent=Physo108685;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_24 ensembl protein_coding_gene 512254 512845 . - . ID=Physo115116;biotype=protein_coding;external_name=estExt_Genewise1.C_240053;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 512254 512845 . - . ID=Physo115116;Parent=Physo115116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 512254 512838 . - 0 ID=Physo115116;Parent=Physo115116;rank=1 scaffold_24 . exon 512254 512845 . - . ID=Physo115116.1;Parent=Physo115116;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 509637 511190 . - . ID=Physo133152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240121;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 509637 511190 . - . ID=Physo133152;Parent=Physo133152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 509637 511190 . - 0 ID=Physo133152;Parent=Physo133152;rank=1 scaffold_24 . exon 509637 511190 . - . ID=Physo133152.1;Parent=Physo133152;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 513283 514829 . + . ID=Physo133154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240123;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 513283 514829 . + . ID=Physo133154;Parent=Physo133154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 513283 514829 . + . ID=Physo133154.1;Parent=Physo133154;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 513286 514755 . + 0 ID=Physo133154;Parent=Physo133154;rank=1 scaffold_24 ensembl protein_coding_gene 514921 516124 . + . ID=Physo133155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240124;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 514921 516124 . + . ID=Physo133155;Parent=Physo133155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 514921 514967 . + . ID=Physo133155.1;Parent=Physo133155;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 514956 514967 . + 0 ID=Physo133155;Parent=Physo133155;rank=1 scaffold_24 . CDS 515108 515947 . + 0 ID=Physo133155;Parent=Physo133155;rank=2 scaffold_24 . exon 515108 515947 . + . ID=Physo133155.2;Parent=Physo133155;constitutive=1;rank=2 scaffold_24 . CDS 516038 516124 . + 0 ID=Physo133155;Parent=Physo133155;rank=3 scaffold_24 . exon 516038 516124 . + . ID=Physo133155.3;Parent=Physo133155;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 516273 517132 . - . ID=Physo156661;biotype=protein_coding;external_name=C_scaffold_24000039;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 516273 517132 . - . ID=Physo156661;Parent=Physo156661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 516273 516692 . - 0 ID=Physo156661;Parent=Physo156661;rank=3 scaffold_24 . exon 516273 516692 . - . ID=Physo156661.3;Parent=Physo156661;constitutive=1;rank=3 scaffold_24 . CDS 516766 516834 . - 0 ID=Physo156661;Parent=Physo156661;rank=2 scaffold_24 . exon 516766 516834 . - . ID=Physo156661.2;Parent=Physo156661;constitutive=1;rank=2 scaffold_24 . CDS 516929 517132 . - 0 ID=Physo156661;Parent=Physo156661;rank=1 scaffold_24 . exon 516929 517132 . - . ID=Physo156661.1;Parent=Physo156661;constitutive=1;rank=1 scaffold_24 . repeat_region 522520 522605 . + . description=(CTG)n scaffold_24 . repeat_region 522564 522605 . ? . description=trf scaffold_24 . repeat_region 522573 522605 . ? . description=trf scaffold_24 . repeat_region 524392 524415 . ? . description=trf scaffold_24 . repeat_region 525997 526024 . ? . description=trf scaffold_24 ensembl protein_coding_gene 525369 526429 . + . ID=Physo108686;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240017;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 525369 526429 . + . ID=Physo108686;Parent=Physo108686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 525369 525787 . + 0 ID=Physo108686;Parent=Physo108686;rank=1 scaffold_24 . exon 525369 525787 . + . ID=Physo108686.1;Parent=Physo108686;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 525884 526064 . + 0 ID=Physo108686;Parent=Physo108686;rank=2 scaffold_24 . exon 525884 526064 . + . ID=Physo108686.2;Parent=Physo108686;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 526178 526429 . + 0 ID=Physo108686;Parent=Physo108686;rank=3 scaffold_24 . exon 526178 526429 . + . ID=Physo108686.3;Parent=Physo108686;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 518641 521311 . + . ID=Physo133157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240126;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 518641 521311 . + . ID=Physo133157;Parent=Physo133157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 518641 518731 . + 0 ID=Physo133157;Parent=Physo133157;rank=1 scaffold_24 . exon 518641 518731 . + . ID=Physo133157.1;Parent=Physo133157;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 518869 520480 . + 0 ID=Physo133157;Parent=Physo133157;rank=2 scaffold_24 . exon 518869 520480 . + . ID=Physo133157.2;Parent=Physo133157;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 520685 520712 . + 0 ID=Physo133157;Parent=Physo133157;rank=3 scaffold_24 . exon 520685 520712 . + . ID=Physo133157.3;Parent=Physo133157;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 520817 521032 . + 0 ID=Physo133157;Parent=Physo133157;rank=4 scaffold_24 . exon 520817 521311 . + . ID=Physo133157.4;Parent=Physo133157;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_24 ensembl protein_coding_gene 521685 522915 . - . ID=Physo133158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240127;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 521685 522915 . - . ID=Physo133158;Parent=Physo133158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 521685 521855 . - 0 ID=Physo133158;Parent=Physo133158;rank=2 scaffold_24 . exon 521685 521855 . - . ID=Physo133158.2;Parent=Physo133158;constitutive=1;rank=2 scaffold_24 . CDS 521937 522725 . - 0 ID=Physo133158;Parent=Physo133158;rank=1 scaffold_24 . exon 521937 522915 . - . ID=Physo133158.1;Parent=Physo133158;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 523231 524192 . - . ID=Physo133159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240128;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 523231 524192 . - . ID=Physo133159;Parent=Physo133159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 523231 523594 . - 0 ID=Physo133159;Parent=Physo133159;rank=4 scaffold_24 . exon 523231 523594 . - . ID=Physo133159.4;Parent=Physo133159;constitutive=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 523687 523893 . - 0 ID=Physo133159;Parent=Physo133159;rank=3 scaffold_24 . exon 523687 523893 . - . ID=Physo133159.3;Parent=Physo133159;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 523974 524124 . - 0 ID=Physo133159;Parent=Physo133159;rank=2 scaffold_24 . exon 523974 524124 . - . ID=Physo133159.2;Parent=Physo133159;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 524174 524192 . - 0 ID=Physo133159;Parent=Physo133159;rank=1 scaffold_24 . exon 524174 524192 . - . ID=Physo133159.1;Parent=Physo133159;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 524310 525086 . + . ID=Physo133160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240129;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 524310 525086 . + . ID=Physo133160;Parent=Physo133160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 524310 525086 . + 0 ID=Physo133160;Parent=Physo133160;rank=1 scaffold_24 . exon 524310 525086 . + . ID=Physo133160.1;Parent=Physo133160;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 526710 528677 . - . ID=Physo133162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240131;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 526710 528677 . - . ID=Physo133162;Parent=Physo133162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 526710 528677 . - 0 ID=Physo133162;Parent=Physo133162;rank=1 scaffold_24 . exon 526710 528677 . - . ID=Physo133162.1;Parent=Physo133162;constitutive=1;rank=1 scaffold_24 . biological_region 533679 533681 0.999 + . logic_name=eponine scaffold_24 . biological_region 533687 533690 0.999 - . logic_name=eponine scaffold_24 . biological_region 533741 533745 0.999 + . logic_name=eponine scaffold_24 . biological_region 533867 533868 0.999 - . logic_name=eponine scaffold_24 . biological_region 533915 533917 0.999 - . logic_name=eponine scaffold_24 . biological_region 534195 534197 0.999 + . logic_name=eponine scaffold_24 . biological_region 536661 536664 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 529293 529941 . + . ID=Physo133163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240132;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 529293 529941 . + . ID=Physo133163;Parent=Physo133163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 529293 529555 . + 0 ID=Physo133163;Parent=Physo133163;rank=1 scaffold_24 . exon 529293 529555 . + . ID=Physo133163.1;Parent=Physo133163;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 529629 529681 . + 0 ID=Physo133163;Parent=Physo133163;rank=2 scaffold_24 . exon 529629 529681 . + . ID=Physo133163.2;Parent=Physo133163;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 529757 529941 . + 0 ID=Physo133163;Parent=Physo133163;rank=3 scaffold_24 . exon 529757 529941 . + . ID=Physo133163.3;Parent=Physo133163;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 ensembl protein_coding_gene 532943 534445 . - . ID=Physo133164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240133;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 532943 534445 . - . ID=Physo133164;Parent=Physo133164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 532943 534445 . - 0 ID=Physo133164;Parent=Physo133164;rank=1 scaffold_24 . exon 532943 534445 . - . ID=Physo133164.1;Parent=Physo133164;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 536601 538061 . - . ID=Physo133165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240134;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 536601 538061 . - . ID=Physo133165;Parent=Physo133165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 536601 538061 . - 0 ID=Physo133165;Parent=Physo133165;rank=1 scaffold_24 . exon 536601 538061 . - . ID=Physo133165.1;Parent=Physo133165;constitutive=1;rank=1 scaffold_24 . repeat_region 543739 543756 . ? . description=dust scaffold_24 . repeat_region 547106 547126 . ? . description=trf scaffold_24 . repeat_region 548159 548166 . ? . description=dust scaffold_24 ensembl protein_coding_gene 543813 544133 . - . ID=Physo108687;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240018;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 543813 544133 . - . ID=Physo108687;Parent=Physo108687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 543813 544133 . - 0 ID=Physo108687;Parent=Physo108687;rank=1 scaffold_24 . exon 543813 544133 . - . ID=Physo108687.1;Parent=Physo108687;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 539274 542321 . - . ID=Physo133166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240135;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 539274 542321 . - . ID=Physo133166;Parent=Physo133166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 539274 542321 . - 0 ID=Physo133166;Parent=Physo133166;rank=1 scaffold_24 . exon 539274 542321 . - . ID=Physo133166.1;Parent=Physo133166;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 542616 543759 . + . ID=Physo133167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240136;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 542616 543759 . + . ID=Physo133167;Parent=Physo133167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 542616 543668 . + 0 ID=Physo133167;Parent=Physo133167;rank=1 scaffold_24 . exon 542616 543759 . + . ID=Physo133167.1;Parent=Physo133167;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 544233 546406 . + . ID=Physo156667;biotype=protein_coding;external_name=C_scaffold_24000045;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 544233 546406 . + . ID=Physo156667;Parent=Physo156667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 544233 544305 . + 0 ID=Physo156667;Parent=Physo156667;rank=1 scaffold_24 . exon 544233 544305 . + . ID=Physo156667.1;Parent=Physo156667;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 544385 544465 . + 0 ID=Physo156667;Parent=Physo156667;rank=2 scaffold_24 . exon 544385 544465 . + . ID=Physo156667.2;Parent=Physo156667;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 544543 544619 . + 0 ID=Physo156667;Parent=Physo156667;rank=3 scaffold_24 . exon 544543 544619 . + . ID=Physo156667.3;Parent=Physo156667;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 544698 544778 . + 0 ID=Physo156667;Parent=Physo156667;rank=4 scaffold_24 . exon 544698 544778 . + . ID=Physo156667.4;Parent=Physo156667;constitutive=1;rank=4 scaffold_24 . CDS 544853 544954 . + 0 ID=Physo156667;Parent=Physo156667;rank=5 scaffold_24 . exon 544853 544954 . + . ID=Physo156667.5;Parent=Physo156667;constitutive=1;rank=5 scaffold_24 . CDS 545014 545193 . + 0 ID=Physo156667;Parent=Physo156667;rank=6 scaffold_24 . exon 545014 545193 . + . ID=Physo156667.6;Parent=Physo156667;constitutive=1;rank=6 scaffold_24 . CDS 545342 545472 . + 0 ID=Physo156667;Parent=Physo156667;rank=7 scaffold_24 . exon 545342 545472 . + . ID=Physo156667.7;Parent=Physo156667;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_24 . CDS 545846 545981 . + 0 ID=Physo156667;Parent=Physo156667;rank=8 scaffold_24 . exon 545846 545981 . + . ID=Physo156667.8;Parent=Physo156667;constitutive=1;ensembl_phase=2;rank=8 scaffold_24 . CDS 546050 546212 . + 0 ID=Physo156667;Parent=Physo156667;rank=9 scaffold_24 . exon 546050 546212 . + . ID=Physo156667.9;Parent=Physo156667;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_24 . CDS 546285 546406 . + 0 ID=Physo156667;Parent=Physo156667;rank=10 scaffold_24 . exon 546285 546406 . + . ID=Physo156667.10;Parent=Physo156667;constitutive=1;ensembl_phase=1;rank=10 scaffold_24 ensembl protein_coding_gene 546587 547284 . - . ID=Physo156668;biotype=protein_coding;external_name=C_scaffold_24000046;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 546587 547284 . - . ID=Physo156668;Parent=Physo156668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 546587 546636 . - 0 ID=Physo156668;Parent=Physo156668;rank=2 scaffold_24 . exon 546587 546636 . - . ID=Physo156668.2;Parent=Physo156668;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 546711 547284 . - 0 ID=Physo156668;Parent=Physo156668;rank=1 scaffold_24 . exon 546711 547284 . - . ID=Physo156668.1;Parent=Physo156668;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . biological_region 549158 549163 0.999 - . logic_name=eponine scaffold_24 . biological_region 555210 555214 0.999 - . logic_name=eponine scaffold_24 . biological_region 556100 556103 0.999 + . logic_name=eponine scaffold_24 . biological_region 556189 556192 0.999 - . logic_name=eponine scaffold_24 . biological_region 556213 556224 0.999 - . logic_name=eponine scaffold_24 . biological_region 556218 556220 0.999 + . logic_name=eponine scaffold_24 . biological_region 556767 556769 0.999 + . logic_name=eponine scaffold_24 ensembl protein_coding_gene 548278 551672 . + . ID=Physo133171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240140;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 548278 551672 . + . ID=Physo133171;Parent=Physo133171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 548278 550713 . + 0 ID=Physo133171;Parent=Physo133171;rank=1 scaffold_24 . exon 548278 550713 . + . ID=Physo133171.1;Parent=Physo133171;constitutive=1;rank=1 scaffold_24 . CDS 550787 550852 . + 0 ID=Physo133171;Parent=Physo133171;rank=2 scaffold_24 . exon 550787 550852 . + . ID=Physo133171.2;Parent=Physo133171;constitutive=1;rank=2 scaffold_24 . CDS 550921 551031 . + 0 ID=Physo133171;Parent=Physo133171;rank=3 scaffold_24 . exon 550921 551031 . + . ID=Physo133171.3;Parent=Physo133171;constitutive=1;rank=3 scaffold_24 . CDS 551100 551567 . + 0 ID=Physo133171;Parent=Physo133171;rank=4 scaffold_24 . exon 551100 551672 . + . ID=Physo133171.4;Parent=Physo133171;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_24 ensembl protein_coding_gene 551741 552544 . - . ID=Physo133172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240141;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 551741 552544 . - . ID=Physo133172;Parent=Physo133172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 551741 552118 . - 0 ID=Physo133172;Parent=Physo133172;rank=3 scaffold_24 . exon 551741 552118 . - . ID=Physo133172.3;Parent=Physo133172;constitutive=1;rank=3 scaffold_24 . CDS 552189 552300 . - 0 ID=Physo133172;Parent=Physo133172;rank=2 scaffold_24 . exon 552189 552300 . - . ID=Physo133172.2;Parent=Physo133172;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 552393 552544 . - 0 ID=Physo133172;Parent=Physo133172;rank=1 scaffold_24 . exon 552393 552544 . - . ID=Physo133172.1;Parent=Physo133172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 555854 556396 . + . ID=Physo133173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240142;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 555854 556396 . + . ID=Physo133173;Parent=Physo133173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 555854 556396 . + 0 ID=Physo133173;Parent=Physo133173;rank=1 scaffold_24 . exon 555854 556396 . + . ID=Physo133173.1;Parent=Physo133173;constitutive=1;rank=1 scaffold_24 . repeat_region 556926 558458 . ? . description=dust scaffold_24 . repeat_region 558546 559668 . - . description=GypsyPi-1c_I-int scaffold_24 . repeat_region 559686 559890 . - . description=GypsyPi-1c_I-int scaffold_24 . repeat_region 565123 565202 . ? . description=trf scaffold_24 . repeat_region 565128 565193 . ? . description=trf scaffold_24 ensembl protein_coding_gene 558991 560603 . - . ID=Physo133174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240143;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 558991 560603 . - . ID=Physo133174;Parent=Physo133174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 558991 559564 . - 0 ID=Physo133174;Parent=Physo133174;rank=2 scaffold_24 . exon 558991 559564 . - . ID=Physo133174.2;Parent=Physo133174;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 559783 560603 . - 0 ID=Physo133174;Parent=Physo133174;rank=1 scaffold_24 . exon 559783 560603 . - . ID=Physo133174.1;Parent=Physo133174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 563562 565771 . + . ID=Physo133175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240144;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 563562 565771 . + . ID=Physo133175;Parent=Physo133175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 563562 565568 . + 0 ID=Physo133175;Parent=Physo133175;rank=1 scaffold_24 . exon 563562 565568 . + . ID=Physo133175.1;Parent=Physo133175;constitutive=1;rank=1 scaffold_24 . CDS 565610 565771 . + 0 ID=Physo133175;Parent=Physo133175;rank=2 scaffold_24 . exon 565610 565771 . + . ID=Physo133175.2;Parent=Physo133175;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 566781 572792 . + . ID=Physo133176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240145;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 566781 572792 . + . ID=Physo133176;Parent=Physo133176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 566781 567600 . + 0 ID=Physo133176;Parent=Physo133176;rank=1 scaffold_24 . exon 566781 567600 . + . ID=Physo133176.1;Parent=Physo133176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 567624 568635 . + 0 ID=Physo133176;Parent=Physo133176;rank=2 scaffold_24 . exon 567624 568635 . + . ID=Physo133176.2;Parent=Physo133176;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 568821 569208 . + 0 ID=Physo133176;Parent=Physo133176;rank=3 scaffold_24 . CDS 569329 569546 . + 0 ID=Physo133176;Parent=Physo133176;rank=4 scaffold_24 . CDS 569723 570447 . + 0 ID=Physo133176;Parent=Physo133176;rank=5 scaffold_24 . CDS 570584 570844 . + 0 ID=Physo133176;Parent=Physo133176;rank=6 scaffold_24 . CDS 571039 571284 . + 0 ID=Physo133176;Parent=Physo133176;rank=7 scaffold_24 . CDS 571816 572097 . + 0 ID=Physo133176;Parent=Physo133176;rank=8 scaffold_24 . CDS 572162 572556 . + 0 ID=Physo133176;Parent=Physo133176;rank=9 scaffold_24 . CDS 572601 572701 . + 0 ID=Physo133176;Parent=Physo133176;rank=10 scaffold_24 . CDS 572768 572792 . + 0 ID=Physo133176;Parent=Physo133176;rank=11 scaffold_24 . biological_region 572537 572538 0.999 + . logic_name=eponine scaffold_24 . biological_region 573287 573290 0.999 - . logic_name=eponine scaffold_24 . biological_region 574247 574251 0.999 + . logic_name=eponine scaffold_24 . biological_region 574351 574356 0.999 + . logic_name=eponine scaffold_24 . biological_region 574499 574499 0.999 - . logic_name=eponine scaffold_24 . biological_region 574514 574518 0.999 - . logic_name=eponine scaffold_24 . biological_region 574554 574558 0.999 + . logic_name=eponine scaffold_24 . biological_region 576973 576978 0.999 + . logic_name=eponine scaffold_24 . biological_region 577230 577233 0.999 - . logic_name=eponine scaffold_24 . exon 568821 569208 . + . ID=Physo133176.3;Parent=Physo133176;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . exon 569329 569546 . + . ID=Physo133176.4;Parent=Physo133176;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_24 . exon 569723 570447 . + . ID=Physo133176.5;Parent=Physo133176;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_24 . exon 570584 570844 . + . ID=Physo133176.6;Parent=Physo133176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_24 . exon 571039 571284 . + . ID=Physo133176.7;Parent=Physo133176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_24 . exon 571816 572097 . + . ID=Physo133176.8;Parent=Physo133176;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_24 . exon 572162 572556 . + . ID=Physo133176.9;Parent=Physo133176;constitutive=1;ensembl_phase=1;rank=9 scaffold_24 . exon 572601 572701 . + . ID=Physo133176.10;Parent=Physo133176;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_24 . exon 572768 572792 . + . ID=Physo133176.11;Parent=Physo133176;constitutive=1;ensembl_phase=2;rank=11 scaffold_24 ensembl protein_coding_gene 573318 574472 . - . ID=Physo133177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240146;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 573318 574472 . - . ID=Physo133177;Parent=Physo133177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 573318 574472 . - . ID=Physo133177.1;Parent=Physo133177;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 573921 574421 . - 0 ID=Physo133177;Parent=Physo133177;rank=1 scaffold_24 ensembl protein_coding_gene 576604 579652 . + . ID=Physo156669;biotype=protein_coding;external_name=C_scaffold_24000047;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 576604 579652 . + . ID=Physo156669;Parent=Physo156669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 576604 577572 . + 0 ID=Physo156669;Parent=Physo156669;rank=1 scaffold_24 . exon 576604 577572 . + . ID=Physo156669.1;Parent=Physo156669;constitutive=1;rank=1 scaffold_24 . CDS 577618 577849 . + 0 ID=Physo156669;Parent=Physo156669;rank=2 scaffold_24 . exon 577618 577849 . + . ID=Physo156669.2;Parent=Physo156669;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 577880 578124 . + 0 ID=Physo156669;Parent=Physo156669;rank=3 scaffold_24 . exon 577880 578124 . + . ID=Physo156669.3;Parent=Physo156669;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 578366 578454 . + 0 ID=Physo156669;Parent=Physo156669;rank=4 scaffold_24 . CDS 578538 578604 . + 0 ID=Physo156669;Parent=Physo156669;rank=5 scaffold_24 . CDS 578699 578789 . + 0 ID=Physo156669;Parent=Physo156669;rank=6 scaffold_24 . CDS 578901 579171 . + 0 ID=Physo156669;Parent=Physo156669;rank=7 scaffold_24 . CDS 579274 579652 . + 0 ID=Physo156669;Parent=Physo156669;rank=8 scaffold_24 . repeat_region 582147 582186 . ? . description=trf scaffold_24 . repeat_region 582333 582393 . ? . description=dust scaffold_24 . repeat_region 585020 585055 . ? . description=trf scaffold_24 ensembl protein_coding_gene 582320 583771 . + . ID=Physo108688;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240019;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 582320 583771 . + . ID=Physo108688;Parent=Physo108688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 582320 583288 . + 0 ID=Physo108688;Parent=Physo108688;rank=1 scaffold_24 . exon 582320 583288 . + . ID=Physo108688.1;Parent=Physo108688;constitutive=1;rank=1 scaffold_24 . CDS 583367 583771 . + 0 ID=Physo108688;Parent=Physo108688;rank=2 scaffold_24 . exon 583367 583771 . + . ID=Physo108688.2;Parent=Physo108688;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 584605 587510 . - . ID=Physo115155;biotype=protein_coding;external_name=estExt_Genewise1.C_240092;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 584605 587510 . - . ID=Physo115155;Parent=Physo115155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 584605 585079 . - . ID=Physo115155.6;Parent=Physo115155;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_24 . CDS 584675 585079 . - 0 ID=Physo115155;Parent=Physo115155;rank=6 scaffold_24 . CDS 585254 586120 . - 0 ID=Physo115155;Parent=Physo115155;rank=5 scaffold_24 . exon 585254 586120 . - . ID=Physo115155.5;Parent=Physo115155;constitutive=1;rank=5 scaffold_24 . CDS 586298 586826 . - 0 ID=Physo115155;Parent=Physo115155;rank=4 scaffold_24 . exon 586298 586826 . - . ID=Physo115155.4;Parent=Physo115155;constitutive=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 586897 586959 . - 0 ID=Physo115155;Parent=Physo115155;rank=3 scaffold_24 . exon 586897 586959 . - . ID=Physo115155.3;Parent=Physo115155;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 587021 587165 . - 0 ID=Physo115155;Parent=Physo115155;rank=2 scaffold_24 . exon 587021 587165 . - . ID=Physo115155.2;Parent=Physo115155;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 587264 587450 . - 0 ID=Physo115155;Parent=Physo115155;rank=1 scaffold_24 . exon 587264 587510 . - . ID=Physo115155.1;Parent=Physo115155;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_24 . exon 578366 578454 . + . ID=Physo156669.4;Parent=Physo156669;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_24 . exon 578538 578604 . + . ID=Physo156669.5;Parent=Physo156669;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 . exon 578699 578789 . + . ID=Physo156669.6;Parent=Physo156669;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_24 . exon 578901 579171 . + . ID=Physo156669.7;Parent=Physo156669;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_24 . exon 579274 579652 . + . ID=Physo156669.8;Parent=Physo156669;constitutive=1;ensembl_phase=2;rank=8 scaffold_24 ensembl protein_coding_gene 580406 581523 . + . ID=Physo156671;biotype=protein_coding;external_name=C_scaffold_24000049;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 580406 581523 . + . ID=Physo156671;Parent=Physo156671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 580406 580708 . + 0 ID=Physo156671;Parent=Physo156671;rank=1 scaffold_24 . exon 580406 580708 . + . ID=Physo156671.1;Parent=Physo156671;constitutive=1;rank=1 scaffold_24 . CDS 580789 581523 . + 0 ID=Physo156671;Parent=Physo156671;rank=2 scaffold_24 . exon 580789 581523 . + . ID=Physo156671.2;Parent=Physo156671;constitutive=1;rank=2 scaffold_24 . repeat_region 588606 588689 . + . description=(CGA)n scaffold_24 . biological_region 588613 588619 0.999 + . logic_name=eponine scaffold_24 . biological_region 588697 588702 0.999 - . logic_name=eponine scaffold_24 . biological_region 588717 588720 0.999 - . logic_name=eponine scaffold_24 . biological_region 592059 592063 0.999 - . logic_name=eponine scaffold_24 . biological_region 592265 592270 0.999 + . logic_name=eponine scaffold_24 . biological_region 592434 592438 0.999 - . logic_name=eponine scaffold_24 . biological_region 592484 592488 0.999 - . logic_name=eponine scaffold_24 . biological_region 592585 592589 0.999 + . logic_name=eponine scaffold_24 . biological_region 592618 592621 0.999 - . logic_name=eponine scaffold_24 . biological_region 593542 593547 0.999 + . logic_name=eponine scaffold_24 . biological_region 596774 596775 0.999 + . logic_name=eponine scaffold_24 . biological_region 596790 596795 0.999 - . logic_name=eponine scaffold_24 . biological_region 596846 596853 0.999 + . logic_name=eponine scaffold_24 . biological_region 596868 596869 0.999 + . logic_name=eponine scaffold_24 . biological_region 596956 596957 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 597101 597618 . + . ID=Physo115164;biotype=protein_coding;external_name=estExt_Genewise1.C_240101;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 597101 597618 . + . ID=Physo115164;Parent=Physo115164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 597101 597128 . + 0 ID=Physo115164;Parent=Physo115164;rank=1 scaffold_24 . exon 597101 597128 . + . ID=Physo115164.1;Parent=Physo115164;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 597215 597543 . + 0 ID=Physo115164;Parent=Physo115164;rank=2 scaffold_24 . exon 597215 597618 . + . ID=Physo115164.2;Parent=Physo115164;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 588213 589259 . + . ID=Physo133183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240152;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 588213 589259 . + . ID=Physo133183;Parent=Physo133183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 588213 589259 . + 0 ID=Physo133183;Parent=Physo133183;rank=1 scaffold_24 . exon 588213 589259 . + . ID=Physo133183.1;Parent=Physo133183;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 592294 593316 . + . ID=Physo133185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240154;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 592294 593316 . + . ID=Physo133185;Parent=Physo133185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 592294 592748 . + . ID=Physo133185.1;Parent=Physo133185;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 592305 592748 . + 0 ID=Physo133185;Parent=Physo133185;rank=1 scaffold_24 . CDS 592830 593018 . + 0 ID=Physo133185;Parent=Physo133185;rank=2 scaffold_24 . exon 592830 593018 . + . ID=Physo133185.2;Parent=Physo133185;constitutive=1;rank=2 scaffold_24 . CDS 593098 593316 . + 0 ID=Physo133185;Parent=Physo133185;rank=3 scaffold_24 . exon 593098 593316 . + . ID=Physo133185.3;Parent=Physo133185;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 593524 594073 . + . ID=Physo133186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240155;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 593524 594073 . + . ID=Physo133186;Parent=Physo133186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 593524 593647 . + 0 ID=Physo133186;Parent=Physo133186;rank=1 scaffold_24 . exon 593524 593647 . + . ID=Physo133186.1;Parent=Physo133186;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 593739 594073 . + 0 ID=Physo133186;Parent=Physo133186;rank=2 scaffold_24 . exon 593739 594073 . + . ID=Physo133186.2;Parent=Physo133186;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 ensembl protein_coding_gene 595204 596923 . - . ID=Physo133187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240156;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 595204 596923 . - . ID=Physo133187;Parent=Physo133187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 595204 596316 . - 0 ID=Physo133187;Parent=Physo133187;rank=3 scaffold_24 . exon 595204 596316 . - . ID=Physo133187.3;Parent=Physo133187;constitutive=1;rank=3 scaffold_24 . CDS 596388 596502 . - 0 ID=Physo133187;Parent=Physo133187;rank=2 scaffold_24 . exon 596388 596502 . - . ID=Physo133187.2;Parent=Physo133187;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 596583 596923 . - 0 ID=Physo133187;Parent=Physo133187;rank=1 scaffold_24 . exon 596583 596923 . - . ID=Physo133187.1;Parent=Physo133187;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 598020 598497 . + . ID=Physo133188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240157;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 598020 598497 . + . ID=Physo133188;Parent=Physo133188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 598020 598075 . + 0 ID=Physo133188;Parent=Physo133188;rank=1 scaffold_24 . exon 598020 598075 . + . ID=Physo133188.1;Parent=Physo133188;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 598163 598236 . + 0 ID=Physo133188;Parent=Physo133188;rank=2 scaffold_24 . CDS 598310 598497 . + 0 ID=Physo133188;Parent=Physo133188;rank=3 scaffold_24 ensembl protein_coding_gene 589426 591400 . + . ID=Physo156676;biotype=protein_coding;external_name=C_scaffold_24000054;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 589426 591400 . + . ID=Physo156676;Parent=Physo156676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 589426 589571 . + 0 ID=Physo156676;Parent=Physo156676;rank=1 scaffold_24 . exon 589426 589571 . + . ID=Physo156676.1;Parent=Physo156676;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 589602 590160 . + 0 ID=Physo156676;Parent=Physo156676;rank=2 scaffold_24 . exon 589602 590160 . + . ID=Physo156676.2;Parent=Physo156676;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 590489 590492 . + 0 ID=Physo156676;Parent=Physo156676;rank=3 scaffold_24 . exon 590489 590492 . + . ID=Physo156676.3;Parent=Physo156676;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_24 . CDS 590658 591400 . + 0 ID=Physo156676;Parent=Physo156676;rank=4 scaffold_24 . exon 590658 591400 . + . ID=Physo156676.4;Parent=Physo156676;constitutive=1;ensembl_phase=1;rank=4 scaffold_24 . repeat_region 600379 600387 . ? . description=dust scaffold_24 . exon 598163 598236 . + . ID=Physo133188.2;Parent=Physo133188;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . exon 598310 598497 . + . ID=Physo133188.3;Parent=Physo133188;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 ensembl protein_coding_gene 599413 600373 . + . ID=Physo133189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240158;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 599413 600373 . + . ID=Physo133189;Parent=Physo133189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 599413 599454 . + 0 ID=Physo133189;Parent=Physo133189;rank=1 scaffold_24 . exon 599413 599454 . + . ID=Physo133189.1;Parent=Physo133189;constitutive=1;rank=1 scaffold_24 . CDS 599517 599627 . + 0 ID=Physo133189;Parent=Physo133189;rank=2 scaffold_24 . exon 599517 599627 . + . ID=Physo133189.2;Parent=Physo133189;constitutive=1;rank=2 scaffold_24 . CDS 599701 599826 . + 0 ID=Physo133189;Parent=Physo133189;rank=3 scaffold_24 . exon 599701 599826 . + . ID=Physo133189.3;Parent=Physo133189;constitutive=1;rank=3 scaffold_24 . CDS 599905 600022 . + 0 ID=Physo133189;Parent=Physo133189;rank=4 scaffold_24 . exon 599905 600022 . + . ID=Physo133189.4;Parent=Physo133189;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_24 . CDS 600088 600203 . + 0 ID=Physo133189;Parent=Physo133189;rank=5 scaffold_24 . exon 600088 600203 . + . ID=Physo133189.5;Parent=Physo133189;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 600287 600373 . + 0 ID=Physo133189;Parent=Physo133189;rank=6 scaffold_24 . exon 600287 600373 . + . ID=Physo133189.6;Parent=Physo133189;constitutive=1;rank=6 scaffold_24 ensembl protein_coding_gene 600536 603205 . - . ID=Physo133190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240159;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 600536 603205 . - . ID=Physo133190;Parent=Physo133190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 600536 601208 . - 0 ID=Physo133190;Parent=Physo133190;rank=6 scaffold_24 . exon 600536 601208 . - . ID=Physo133190.6;Parent=Physo133190;constitutive=1;ensembl_phase=2;rank=6 scaffold_24 . CDS 601281 601423 . - 0 ID=Physo133190;Parent=Physo133190;rank=5 scaffold_24 . exon 601281 601423 . - . ID=Physo133190.5;Parent=Physo133190;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_24 . CDS 601490 601628 . - 0 ID=Physo133190;Parent=Physo133190;rank=4 scaffold_24 . exon 601490 601628 . - . ID=Physo133190.4;Parent=Physo133190;constitutive=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 601698 601745 . - 0 ID=Physo133190;Parent=Physo133190;rank=3 scaffold_24 . exon 601698 601745 . - . ID=Physo133190.3;Parent=Physo133190;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 602101 602790 . - 0 ID=Physo133190;Parent=Physo133190;rank=2 scaffold_24 . exon 602101 602790 . - . ID=Physo133190.2;Parent=Physo133190;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 602865 603205 . - 0 ID=Physo133190;Parent=Physo133190;rank=1 scaffold_24 . exon 602865 603205 . - . ID=Physo133190.1;Parent=Physo133190;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 604989 607478 . - . ID=Physo156678;biotype=protein_coding;external_name=C_scaffold_24000056;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 604989 607478 . - . ID=Physo156678;Parent=Physo156678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 604989 605664 . - 0 ID=Physo156678;Parent=Physo156678;rank=5 scaffold_24 . exon 604989 605664 . - . ID=Physo156678.5;Parent=Physo156678;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 . CDS 605750 606127 . - 0 ID=Physo156678;Parent=Physo156678;rank=4 scaffold_24 . exon 605750 606127 . - . ID=Physo156678.4;Parent=Physo156678;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_24 . CDS 606374 606862 . - 0 ID=Physo156678;Parent=Physo156678;rank=3 scaffold_24 . exon 606374 606862 . - . ID=Physo156678.3;Parent=Physo156678;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 606892 607059 . - 0 ID=Physo156678;Parent=Physo156678;rank=2 scaffold_24 . exon 606892 607059 . - . ID=Physo156678.2;Parent=Physo156678;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 607129 607478 . - 0 ID=Physo156678;Parent=Physo156678;rank=1 scaffold_24 . exon 607129 607478 . - . ID=Physo156678.1;Parent=Physo156678;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 608008 609132 . - . ID=Physo156679;biotype=protein_coding;external_name=C_scaffold_24000057;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 608008 609132 . - . ID=Physo156679;Parent=Physo156679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 608008 608692 . - 0 ID=Physo156679;Parent=Physo156679;rank=2 scaffold_24 . exon 608008 608692 . - . ID=Physo156679.2;Parent=Physo156679;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 608780 609132 . - 0 ID=Physo156679;Parent=Physo156679;rank=1 scaffold_24 . biological_region 609125 609133 0.999 - . logic_name=eponine scaffold_24 . biological_region 609185 609188 0.999 + . logic_name=eponine scaffold_24 . biological_region 610990 610993 0.999 - . logic_name=eponine scaffold_24 . biological_region 611277 611280 0.999 - . logic_name=eponine scaffold_24 . biological_region 611354 611357 0.999 + . logic_name=eponine scaffold_24 . biological_region 611488 611492 0.999 - . logic_name=eponine scaffold_24 . biological_region 613412 613413 0.999 - . logic_name=eponine scaffold_24 . biological_region 613948 613953 0.999 - . logic_name=eponine scaffold_24 . biological_region 615023 615027 0.999 + . logic_name=eponine scaffold_24 . biological_region 615084 615085 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 612214 612993 . + . ID=Physo133193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240162;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 612214 612993 . + . ID=Physo133193;Parent=Physo133193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 612214 612993 . + . ID=Physo133193.1;Parent=Physo133193;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 612231 612860 . + 0 ID=Physo133193;Parent=Physo133193;rank=1 scaffold_24 ensembl protein_coding_gene 613559 615142 . - . ID=Physo133194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240163;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 613559 615142 . - . ID=Physo133194;Parent=Physo133194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 613559 615142 . - 0 ID=Physo133194;Parent=Physo133194;rank=1 scaffold_24 . exon 613559 615142 . - . ID=Physo133194.1;Parent=Physo133194;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 615606 616925 . + . ID=Physo133195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240164;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 615606 616925 . + . ID=Physo133195;Parent=Physo133195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 615606 615940 . + 0 ID=Physo133195;Parent=Physo133195;rank=1 scaffold_24 . exon 615606 615940 . + . ID=Physo133195.1;Parent=Physo133195;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 616721 616925 . + 0 ID=Physo133195;Parent=Physo133195;rank=2 scaffold_24 . exon 616721 616925 . + . ID=Physo133195.2;Parent=Physo133195;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . exon 608780 609132 . - . ID=Physo156679.1;Parent=Physo156679;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 609767 610964 . - . ID=Physo156680;biotype=protein_coding;external_name=C_scaffold_24000058;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 609767 610964 . - . ID=Physo156680;Parent=Physo156680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 609767 609850 . - 0 ID=Physo156680;Parent=Physo156680;rank=3 scaffold_24 . exon 609767 609850 . - . ID=Physo156680.3;Parent=Physo156680;constitutive=1;rank=3 scaffold_24 . CDS 609936 610530 . - 0 ID=Physo156680;Parent=Physo156680;rank=2 scaffold_24 . exon 609936 610530 . - . ID=Physo156680.2;Parent=Physo156680;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 610624 610964 . - 0 ID=Physo156680;Parent=Physo156680;rank=1 scaffold_24 . exon 610624 610964 . - . ID=Physo156680.1;Parent=Physo156680;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . repeat_region 618861 618938 . ? . description=dust scaffold_24 . repeat_region 624250 624281 . ? . description=trf scaffold_24 . repeat_region 624254 624281 . ? . description=trf scaffold_24 . repeat_region 625643 625821 . + . description=(CGA)n scaffold_24 . repeat_region 625750 625839 . ? . description=trf scaffold_24 . repeat_region 625774 625839 . ? . description=trf scaffold_24 ensembl protein_coding_gene 618961 630285 . + . ID=Physo108689;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240020;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 618961 630285 . + . ID=Physo108689;Parent=Physo108689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 618961 620020 . + 0 ID=Physo108689;Parent=Physo108689;rank=1 scaffold_24 . exon 618961 620020 . + . ID=Physo108689.1;Parent=Physo108689;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 625944 625946 . + 0 ID=Physo108689;Parent=Physo108689;rank=2 scaffold_24 . exon 625944 625946 . + . ID=Physo108689.2;Parent=Physo108689;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 630266 630285 . + 0 ID=Physo108689;Parent=Physo108689;rank=3 scaffold_24 . biological_region 632584 632588 0.999 + . logic_name=eponine scaffold_24 . biological_region 632635 632638 0.999 + . logic_name=eponine scaffold_24 . biological_region 632706 632708 0.999 + . logic_name=eponine scaffold_24 . biological_region 632766 632771 0.999 + . logic_name=eponine scaffold_24 . biological_region 632767 632768 0.999 - . logic_name=eponine scaffold_24 . biological_region 635640 635642 0.999 - . logic_name=eponine scaffold_24 . biological_region 635696 635696 0.999 + . logic_name=eponine scaffold_24 . exon 630266 630285 . + . ID=Physo108689.3;Parent=Physo108689;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 ensembl protein_coding_gene 631077 632042 . - . ID=Physo133197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240166;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 631077 632042 . - . ID=Physo133197;Parent=Physo133197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 631077 632042 . - 0 ID=Physo133197;Parent=Physo133197;rank=1 scaffold_24 . exon 631077 632042 . - . ID=Physo133197.1;Parent=Physo133197;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 632288 636386 . + . ID=Physo133198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240167;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 632288 636386 . + . ID=Physo133198;Parent=Physo133198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 632288 633215 . + 0 ID=Physo133198;Parent=Physo133198;rank=1 scaffold_24 . exon 632288 633215 . + . ID=Physo133198.1;Parent=Physo133198;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 633836 634382 . + 0 ID=Physo133198;Parent=Physo133198;rank=2 scaffold_24 . exon 633836 634382 . + . ID=Physo133198.2;Parent=Physo133198;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 634497 635534 . + 0 ID=Physo133198;Parent=Physo133198;rank=3 scaffold_24 . exon 634497 635534 . + . ID=Physo133198.3;Parent=Physo133198;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 635703 635872 . + 0 ID=Physo133198;Parent=Physo133198;rank=4 scaffold_24 . exon 635703 635872 . + . ID=Physo133198.4;Parent=Physo133198;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 635893 636386 . + 0 ID=Physo133198;Parent=Physo133198;rank=5 scaffold_24 . exon 635893 636386 . + . ID=Physo133198.5;Parent=Physo133198;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 ensembl protein_coding_gene 637564 638872 . - . ID=Physo133199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240168;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 637564 638872 . - . ID=Physo133199;Parent=Physo133199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 637564 638872 . - . ID=Physo133199.1;Parent=Physo133199;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_24 . CDS 637598 638872 . - 0 ID=Physo133199;Parent=Physo133199;rank=1 scaffold_24 . repeat_region 639716 639735 . ? . description=trf scaffold_24 . repeat_region 639716 639743 . ? . description=dust scaffold_24 . repeat_region 643033 643535 . ? . description=dust scaffold_24 . repeat_region 646377 646466 . ? . description=trf scaffold_24 . repeat_region 646377 646466 . ? . description=trf scaffold_24 . repeat_region 646395 646573 . + . description=(TCG)n scaffold_24 . repeat_region 647621 647642 . ? . description=dust scaffold_24 . repeat_region 647673 647701 . ? . description=trf scaffold_24 ensembl protein_coding_gene 645768 646600 . - . ID=Physo133200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240169;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 645768 646600 . - . ID=Physo133200;Parent=Physo133200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 645768 646122 . - 0 ID=Physo133200;Parent=Physo133200;rank=3 scaffold_24 . exon 645768 646122 . - . ID=Physo133200.3;Parent=Physo133200;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . CDS 646198 646243 . - 0 ID=Physo133200;Parent=Physo133200;rank=2 scaffold_24 . exon 646198 646243 . - . ID=Physo133200.2;Parent=Physo133200;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_24 . CDS 646342 646600 . - 0 ID=Physo133200;Parent=Physo133200;rank=1 scaffold_24 . exon 646342 646600 . - . ID=Physo133200.1;Parent=Physo133200;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 651016 651200 . - . description=Polinton-1_PI scaffold_24 . repeat_region 651216 651281 . - . description=Polinton-1_PI scaffold_24 . repeat_region 652995 653263 . + . description=Polinton-1_PI scaffold_24 . biological_region 653198 653203 0.999 + . logic_name=eponine scaffold_24 . repeat_region 654032 669997 . + . description=Polinton-1_PI scaffold_24 ensembl protein_coding_gene 650301 650935 . - . ID=Physo108690;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240021;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 650301 650935 . - . ID=Physo108690;Parent=Physo108690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 650301 650729 . - 0 ID=Physo108690;Parent=Physo108690;rank=2 scaffold_24 . exon 650301 650729 . - . ID=Physo108690.2;Parent=Physo108690;constitutive=1;rank=2 scaffold_24 . CDS 650768 650935 . - 0 ID=Physo108690;Parent=Physo108690;rank=1 scaffold_24 . exon 650768 650935 . - . ID=Physo108690.1;Parent=Physo108690;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 648522 650105 . + . ID=Physo133201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240170;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 648522 650105 . + . ID=Physo133201;Parent=Physo133201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 648522 650105 . + 0 ID=Physo133201;Parent=Physo133201;rank=1 scaffold_24 . exon 648522 650105 . + . ID=Physo133201.1;Parent=Physo133201;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 651385 652723 . - . ID=Physo133203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240172;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 651385 652723 . - . ID=Physo133203;Parent=Physo133203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 651385 651389 . - 0 ID=Physo133203;Parent=Physo133203;rank=3 scaffold_24 . exon 651385 651389 . - . ID=Physo133203.3;Parent=Physo133203;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 651562 652180 . - 0 ID=Physo133203;Parent=Physo133203;rank=2 scaffold_24 . exon 651562 652180 . - . ID=Physo133203.2;Parent=Physo133203;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 652259 652723 . - 0 ID=Physo133203;Parent=Physo133203;rank=1 scaffold_24 . exon 652259 652723 . - . ID=Physo133203.1;Parent=Physo133203;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 654673 658112 . + . ID=Physo133204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240173;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 654673 658112 . + . ID=Physo133204;Parent=Physo133204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 654673 654699 . + 0 ID=Physo133204;Parent=Physo133204;rank=1 scaffold_24 . exon 654673 654699 . + . ID=Physo133204.1;Parent=Physo133204;constitutive=1;rank=1 scaffold_24 . CDS 654726 654905 . + 0 ID=Physo133204;Parent=Physo133204;rank=2 scaffold_24 . exon 654726 654905 . + . ID=Physo133204.2;Parent=Physo133204;constitutive=1;rank=2 scaffold_24 . CDS 654957 656649 . + 0 ID=Physo133204;Parent=Physo133204;rank=3 scaffold_24 . exon 654957 656649 . + . ID=Physo133204.3;Parent=Physo133204;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_24 . CDS 656873 657023 . + 0 ID=Physo133204;Parent=Physo133204;rank=4 scaffold_24 . exon 656873 657023 . + . ID=Physo133204.4;Parent=Physo133204;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_24 . CDS 657045 658064 . + 0 ID=Physo133204;Parent=Physo133204;rank=5 scaffold_24 . exon 657045 658064 . + . ID=Physo133204.5;Parent=Physo133204;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_24 . CDS 658103 658112 . + 0 ID=Physo133204;Parent=Physo133204;rank=6 scaffold_24 . repeat_region 663036 663074 . ? . description=trf scaffold_24 . exon 658103 658112 . + . ID=Physo133204.6;Parent=Physo133204;constitutive=1;ensembl_phase=2;rank=6 scaffold_24 . repeat_region 654032 669997 . + . description=Polinton-1_PI scaffold_24 . repeat_region 669425 669432 . ? . description=dust scaffold_24 . biological_region 670270 670273 0.999 + . logic_name=eponine scaffold_24 . biological_region 670284 670285 0.999 - . logic_name=eponine scaffold_24 . biological_region 670321 670327 0.999 + . logic_name=eponine scaffold_24 . biological_region 670351 670353 0.999 + . logic_name=eponine scaffold_24 . biological_region 670359 670362 0.999 + . logic_name=eponine scaffold_24 . biological_region 670412 670415 0.999 - . logic_name=eponine scaffold_24 . biological_region 670425 670428 0.999 + . logic_name=eponine scaffold_24 . biological_region 670437 670437 0.999 - . logic_name=eponine scaffold_24 . biological_region 670461 670467 0.999 - . logic_name=eponine scaffold_24 . repeat_region 674288 674295 . ? . description=dust scaffold_24 . biological_region 674306 674310 0.999 - . logic_name=eponine scaffold_24 . biological_region 674830 674834 0.999 - . logic_name=eponine scaffold_24 . biological_region 677075 677079 0.999 + . logic_name=eponine scaffold_24 . biological_region 677096 677102 0.999 - . logic_name=eponine scaffold_24 . biological_region 677151 677157 0.999 + . logic_name=eponine scaffold_24 . biological_region 677169 677181 0.999 - . logic_name=eponine scaffold_24 . biological_region 677337 677338 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 670180 671050 . + . ID=Physo133205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240174;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 670180 671050 . + . ID=Physo133205;Parent=Physo133205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 670180 671050 . + . ID=Physo133205.1;Parent=Physo133205;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 670181 670948 . + 0 ID=Physo133205;Parent=Physo133205;rank=1 scaffold_24 ensembl protein_coding_gene 671102 672272 . - . ID=Physo133206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240175;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 671102 672272 . - . ID=Physo133206;Parent=Physo133206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 671102 672067 . - 0 ID=Physo133206;Parent=Physo133206;rank=2 scaffold_24 . exon 671102 672067 . - . ID=Physo133206.2;Parent=Physo133206;constitutive=1;rank=2 scaffold_24 . CDS 672140 672187 . - 0 ID=Physo133206;Parent=Physo133206;rank=1 scaffold_24 . exon 672140 672272 . - . ID=Physo133206.1;Parent=Physo133206;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 675589 676143 . + . ID=Physo133207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240176;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 675589 676143 . + . ID=Physo133207;Parent=Physo133207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 675589 676143 . + 0 ID=Physo133207;Parent=Physo133207;rank=1 scaffold_24 . exon 675589 676143 . + . ID=Physo133207.1;Parent=Physo133207;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 676420 676809 . - . ID=Physo133208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240177;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 676420 676809 . - . ID=Physo133208;Parent=Physo133208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 676420 676809 . - 0 ID=Physo133208;Parent=Physo133208;rank=1 scaffold_24 . exon 676420 676809 . - . ID=Physo133208.1;Parent=Physo133208;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 677003 677487 . + . ID=Physo156683;biotype=protein_coding;external_name=C_scaffold_24000061;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 677003 677487 . + . ID=Physo156683;Parent=Physo156683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 677003 677323 . + 0 ID=Physo156683;Parent=Physo156683;rank=1 scaffold_24 . exon 677003 677323 . + . ID=Physo156683.1;Parent=Physo156683;constitutive=1;rank=1 scaffold_24 . CDS 677407 677487 . + 0 ID=Physo156683;Parent=Physo156683;rank=2 scaffold_24 . exon 677407 677487 . + . ID=Physo156683.2;Parent=Physo156683;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 677807 679590 . - . ID=Physo156684;biotype=protein_coding;external_name=C_scaffold_24000062;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 677807 679590 . - . ID=Physo156684;Parent=Physo156684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 677807 677969 . - 0 ID=Physo156684;Parent=Physo156684;rank=5 scaffold_24 . exon 677807 677969 . - . ID=Physo156684.5;Parent=Physo156684;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 . CDS 678047 678135 . - 0 ID=Physo156684;Parent=Physo156684;rank=4 scaffold_24 . CDS 678222 678633 . - 0 ID=Physo156684;Parent=Physo156684;rank=3 scaffold_24 . CDS 679072 679175 . - 0 ID=Physo156684;Parent=Physo156684;rank=2 scaffold_24 . CDS 679276 679590 . - 0 ID=Physo156684;Parent=Physo156684;rank=1 scaffold_24 . repeat_region 682423 682449 . ? . description=trf scaffold_24 . repeat_region 686123 686143 . ? . description=trf scaffold_24 ensembl protein_coding_gene 679951 681482 . + . ID=Physo133212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240181;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 679951 681482 . + . ID=Physo133212;Parent=Physo133212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 679951 680028 . + 0 ID=Physo133212;Parent=Physo133212;rank=1 scaffold_24 . exon 679951 680028 . + . ID=Physo133212.1;Parent=Physo133212;constitutive=1;rank=1 scaffold_24 . CDS 680128 680183 . + 0 ID=Physo133212;Parent=Physo133212;rank=2 scaffold_24 . exon 680128 680183 . + . ID=Physo133212.2;Parent=Physo133212;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_24 . CDS 680260 680535 . + 0 ID=Physo133212;Parent=Physo133212;rank=3 scaffold_24 . exon 680260 680535 . + . ID=Physo133212.3;Parent=Physo133212;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 680610 680689 . + 0 ID=Physo133212;Parent=Physo133212;rank=4 scaffold_24 . exon 680610 680689 . + . ID=Physo133212.4;Parent=Physo133212;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_24 . CDS 680758 681482 . + 0 ID=Physo133212;Parent=Physo133212;rank=5 scaffold_24 . exon 680758 681482 . + . ID=Physo133212.5;Parent=Physo133212;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 ensembl protein_coding_gene 681643 685573 . - . ID=Physo133213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240182;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 681643 685573 . - . ID=Physo133213;Parent=Physo133213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 681643 683856 . - 0 ID=Physo133213;Parent=Physo133213;rank=3 scaffold_24 . exon 681643 683856 . - . ID=Physo133213.4;Parent=Physo133213;constitutive=1;rank=4 scaffold_24 . CDS 684695 684769 . - 0 ID=Physo133213;Parent=Physo133213;rank=2 scaffold_24 . exon 684695 684769 . - . ID=Physo133213.3;Parent=Physo133213;constitutive=1;rank=3 scaffold_24 . CDS 684857 684931 . - 0 ID=Physo133213;Parent=Physo133213;rank=1 scaffold_24 . exon 684857 684961 . - . ID=Physo133213.2;Parent=Physo133213;constitutive=1;ensembl_phase=-1;rank=2 scaffold_24 . exon 685434 685573 . - . ID=Physo133213.1;Parent=Physo133213;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . exon 678047 678135 . - . ID=Physo156684.4;Parent=Physo156684;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_24 . exon 678222 678633 . - . ID=Physo156684.3;Parent=Physo156684;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . exon 679072 679175 . - . ID=Physo156684.2;Parent=Physo156684;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_24 . exon 679276 679590 . - . ID=Physo156684.1;Parent=Physo156684;constitutive=1;rank=1 scaffold_24 . biological_region 688437 688442 0.999 + . logic_name=eponine scaffold_24 . biological_region 688514 688517 0.999 - . logic_name=eponine scaffold_24 . biological_region 688670 688670 0.999 - . logic_name=eponine scaffold_24 . repeat_region 692639 692749 . ? . description=dust scaffold_24 . repeat_region 693816 693823 . ? . description=dust scaffold_24 . biological_region 695145 695147 0.999 + . logic_name=eponine scaffold_24 . biological_region 695426 695427 0.999 - . logic_name=eponine scaffold_24 . repeat_region 695884 695891 . ? . description=dust scaffold_24 . biological_region 695888 695891 0.999 + . logic_name=eponine scaffold_24 . biological_region 696173 696177 0.999 - . logic_name=eponine scaffold_24 . biological_region 696478 696479 0.999 + . logic_name=eponine scaffold_24 . biological_region 696532 696536 0.999 - . logic_name=eponine scaffold_24 . biological_region 696533 696537 0.999 + . logic_name=eponine scaffold_24 . biological_region 697499 697504 0.999 + . logic_name=eponine scaffold_24 . biological_region 697546 697546 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 687956 689672 . + . ID=Physo133215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240184;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 687956 689672 . + . ID=Physo133215;Parent=Physo133215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 687956 688890 . + 0 ID=Physo133215;Parent=Physo133215;rank=1 scaffold_24 . exon 687956 688890 . + . ID=Physo133215.1;Parent=Physo133215;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 688964 689505 . + 0 ID=Physo133215;Parent=Physo133215;rank=2 scaffold_24 . exon 688964 689505 . + . ID=Physo133215.2;Parent=Physo133215;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 689581 689672 . + 0 ID=Physo133215;Parent=Physo133215;rank=3 scaffold_24 . exon 689581 689672 . + . ID=Physo133215.3;Parent=Physo133215;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 ensembl protein_coding_gene 690905 691219 . - . ID=Physo133216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240185;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 690905 691219 . - . ID=Physo133216;Parent=Physo133216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 690905 691219 . - 0 ID=Physo133216;Parent=Physo133216;rank=1 scaffold_24 . exon 690905 691219 . - . ID=Physo133216.1;Parent=Physo133216;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 691390 692532 . - . ID=Physo133217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240186;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 691390 692532 . - . ID=Physo133217;Parent=Physo133217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 691390 691544 . - . ID=Physo133217.4;Parent=Physo133217;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_24 . CDS 691461 691544 . - 0 ID=Physo133217;Parent=Physo133217;rank=4 scaffold_24 . CDS 691622 691795 . - 0 ID=Physo133217;Parent=Physo133217;rank=3 scaffold_24 . exon 691622 691795 . - . ID=Physo133217.3;Parent=Physo133217;constitutive=1;rank=3 scaffold_24 . CDS 691878 692105 . - 0 ID=Physo133217;Parent=Physo133217;rank=2 scaffold_24 . exon 691878 692105 . - . ID=Physo133217.2;Parent=Physo133217;constitutive=1;rank=2 scaffold_24 . CDS 692245 692532 . - 0 ID=Physo133217;Parent=Physo133217;rank=1 scaffold_24 . exon 692245 692532 . - . ID=Physo133217.1;Parent=Physo133217;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 695198 697118 . + . ID=Physo133218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240187;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 695198 697118 . + . ID=Physo133218;Parent=Physo133218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 695198 695689 . + 0 ID=Physo133218;Parent=Physo133218;rank=1 scaffold_24 . exon 695198 695689 . + . ID=Physo133218.1;Parent=Physo133218;constitutive=1;rank=1 scaffold_24 . CDS 695744 695873 . + 0 ID=Physo133218;Parent=Physo133218;rank=2 scaffold_24 . exon 695744 695873 . + . ID=Physo133218.2;Parent=Physo133218;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 695908 697118 . + 0 ID=Physo133218;Parent=Physo133218;rank=3 scaffold_24 . exon 695908 697118 . + . ID=Physo133218.3;Parent=Physo133218;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 ensembl protein_coding_gene 697371 698164 . + . ID=Physo133219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240188;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 697371 698164 . + . ID=Physo133219;Parent=Physo133219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 697371 698113 . + 0 ID=Physo133219;Parent=Physo133219;rank=1 scaffold_24 . exon 697371 698113 . + . ID=Physo133219.1;Parent=Physo133219;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 698149 698164 . + 0 ID=Physo133219;Parent=Physo133219;rank=2 scaffold_24 . repeat_region 700466 700647 . - . description=GypsyPi-1c_LTR scaffold_24 . repeat_region 700769 700860 . - . description=GypsyPi-1c_I-int scaffold_24 . repeat_region 701638 708345 . - . description=GypsyPi-1c_I-int scaffold_24 . repeat_region 706316 706414 . ? . description=trf scaffold_24 . repeat_region 706445 706488 . ? . description=trf scaffold_24 . exon 698149 698164 . + . ID=Physo133219.2;Parent=Physo133219;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 ensembl protein_coding_gene 700663 703142 . + . ID=Physo133220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240189;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 700663 703142 . + . ID=Physo133220;Parent=Physo133220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 700663 700691 . + 0 ID=Physo133220;Parent=Physo133220;rank=1 scaffold_24 . exon 700663 700691 . + . ID=Physo133220.1;Parent=Physo133220;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 700784 701512 . + 0 ID=Physo133220;Parent=Physo133220;rank=2 scaffold_24 . exon 700784 701512 . + . ID=Physo133220.2;Parent=Physo133220;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . CDS 701592 701882 . + 0 ID=Physo133220;Parent=Physo133220;rank=3 scaffold_24 . exon 701592 701882 . + . ID=Physo133220.3;Parent=Physo133220;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_24 . CDS 701975 703142 . + 0 ID=Physo133220;Parent=Physo133220;rank=4 scaffold_24 . exon 701975 703142 . + . ID=Physo133220.4;Parent=Physo133220;constitutive=1;ensembl_phase=2;rank=4 scaffold_24 ensembl protein_coding_gene 703656 706866 . - . ID=Physo133221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240190;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 703656 706866 . - . ID=Physo133221;Parent=Physo133221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 703656 704810 . - 0 ID=Physo133221;Parent=Physo133221;rank=4 scaffold_24 . exon 703656 704810 . - . ID=Physo133221.4;Parent=Physo133221;constitutive=1;rank=4 scaffold_24 . CDS 705097 706208 . - 0 ID=Physo133221;Parent=Physo133221;rank=3 scaffold_24 . exon 705097 706208 . - . ID=Physo133221.3;Parent=Physo133221;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 706245 706548 . - 0 ID=Physo133221;Parent=Physo133221;rank=2 scaffold_24 . exon 706245 706548 . - . ID=Physo133221.2;Parent=Physo133221;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 706591 706866 . - 0 ID=Physo133221;Parent=Physo133221;rank=1 scaffold_24 . exon 706591 706866 . - . ID=Physo133221.1;Parent=Physo133221;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 707254 708258 . - . ID=Physo133222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240191;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 707254 708258 . - . ID=Physo133222;Parent=Physo133222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 707254 708258 . - 0 ID=Physo133222;Parent=Physo133222;rank=1 scaffold_24 . exon 707254 708258 . - . ID=Physo133222.1;Parent=Physo133222;constitutive=1;rank=1 scaffold_24 . biological_region 707823 707825 0.999 + . logic_name=eponine scaffold_24 . biological_region 713756 713756 0.999 + . logic_name=eponine scaffold_24 . biological_region 713880 713882 0.999 - . logic_name=eponine scaffold_24 . repeat_region 716938 716954 . ? . description=dust scaffold_24 ensembl protein_coding_gene 709157 710146 . - . ID=Physo133223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240192;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 709157 710146 . - . ID=Physo133223;Parent=Physo133223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 709157 710146 . - 0 ID=Physo133223;Parent=Physo133223;rank=1 scaffold_24 . exon 709157 710146 . - . ID=Physo133223.1;Parent=Physo133223;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 711014 711695 . - . ID=Physo133224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240193;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 711014 711695 . - . ID=Physo133224;Parent=Physo133224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 711014 711175 . - . ID=Physo133224.2;Parent=Physo133224;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_24 . CDS 711107 711175 . - 0 ID=Physo133224;Parent=Physo133224;rank=2 scaffold_24 . CDS 711258 711695 . - 0 ID=Physo133224;Parent=Physo133224;rank=1 scaffold_24 . exon 711258 711695 . - . ID=Physo133224.1;Parent=Physo133224;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 712104 715423 . + . ID=Physo133225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240194;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 712104 715423 . + . ID=Physo133225;Parent=Physo133225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 712104 712173 . + 0 ID=Physo133225;Parent=Physo133225;rank=1 scaffold_24 . exon 712104 712173 . + . ID=Physo133225.1;Parent=Physo133225;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 712384 712464 . + 0 ID=Physo133225;Parent=Physo133225;rank=2 scaffold_24 . exon 712384 712464 . + . ID=Physo133225.2;Parent=Physo133225;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 712544 715104 . + 0 ID=Physo133225;Parent=Physo133225;rank=3 scaffold_24 . exon 712544 715104 . + . ID=Physo133225.3;Parent=Physo133225;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 715172 715423 . + 0 ID=Physo133225;Parent=Physo133225;rank=4 scaffold_24 . exon 715172 715423 . + . ID=Physo133225.4;Parent=Physo133225;constitutive=1;rank=4 scaffold_24 ensembl protein_coding_gene 717297 721991 . - . ID=Physo156685;biotype=protein_coding;external_name=C_scaffold_24000063;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 717297 721991 . - . ID=Physo156685;Parent=Physo156685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 717297 718603 . - 0 ID=Physo156685;Parent=Physo156685;rank=7 scaffold_24 . exon 717297 718603 . - . ID=Physo156685.7;Parent=Physo156685;constitutive=1;ensembl_phase=1;rank=7 scaffold_24 . CDS 718784 718875 . - 0 ID=Physo156685;Parent=Physo156685;rank=6 scaffold_24 . CDS 719116 719181 . - 0 ID=Physo156685;Parent=Physo156685;rank=5 scaffold_24 . CDS 719212 719564 . - 0 ID=Physo156685;Parent=Physo156685;rank=4 scaffold_24 . CDS 720156 721158 . - 0 ID=Physo156685;Parent=Physo156685;rank=3 scaffold_24 . CDS 721195 721320 . - 0 ID=Physo156685;Parent=Physo156685;rank=2 scaffold_24 . CDS 721360 721991 . - 0 ID=Physo156685;Parent=Physo156685;rank=1 scaffold_24 . repeat_region 722165 722205 . ? . description=trf scaffold_24 . repeat_region 722208 722236 . ? . description=trf scaffold_24 ensembl protein_coding_gene 722084 724073 . + . ID=Physo108692;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240023;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 722084 724073 . + . ID=Physo108692;Parent=Physo108692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 722084 722295 . + 0 ID=Physo108692;Parent=Physo108692;rank=1 scaffold_24 . exon 722084 722295 . + . ID=Physo108692.1;Parent=Physo108692;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 722356 724018 . + 0 ID=Physo108692;Parent=Physo108692;rank=2 scaffold_24 . exon 722356 724073 . + . ID=Physo108692.2;Parent=Physo108692;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_24 ensembl protein_coding_gene 724222 724908 . + . ID=Physo108693;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240024;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 724222 724908 . + . ID=Physo108693;Parent=Physo108693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 724222 724419 . + 0 ID=Physo108693;Parent=Physo108693;rank=1 scaffold_24 . exon 724222 724419 . + . ID=Physo108693.1;Parent=Physo108693;constitutive=1;rank=1 scaffold_24 . CDS 724491 724550 . + 0 ID=Physo108693;Parent=Physo108693;rank=2 scaffold_24 . exon 724491 724550 . + . ID=Physo108693.2;Parent=Physo108693;constitutive=1;rank=2 scaffold_24 . CDS 724615 724908 . + 0 ID=Physo108693;Parent=Physo108693;rank=3 scaffold_24 . exon 724615 724908 . + . ID=Physo108693.3;Parent=Physo108693;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 727450 728745 . + . ID=Physo133230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240199;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 727450 728745 . + . ID=Physo133230;Parent=Physo133230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 727450 727527 . + 0 ID=Physo133230;Parent=Physo133230;rank=1 scaffold_24 . exon 727450 727527 . + . ID=Physo133230.1;Parent=Physo133230;constitutive=1;rank=1 scaffold_24 . CDS 727915 728745 . + 0 ID=Physo133230;Parent=Physo133230;rank=2 scaffold_24 . exon 718784 718875 . - . ID=Physo156685.6;Parent=Physo156685;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_24 . exon 719116 719181 . - . ID=Physo156685.5;Parent=Physo156685;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_24 . exon 719212 719564 . - . ID=Physo156685.4;Parent=Physo156685;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_24 . exon 720156 721158 . - . ID=Physo156685.3;Parent=Physo156685;constitutive=1;ensembl_phase=2;rank=3 scaffold_24 . exon 721195 721320 . - . ID=Physo156685.2;Parent=Physo156685;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_24 . exon 721360 721991 . - . ID=Physo156685.1;Parent=Physo156685;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 ensembl protein_coding_gene 725219 726613 . - . ID=Physo156688;biotype=protein_coding;external_name=C_scaffold_24000066;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 725219 726613 . - . ID=Physo156688;Parent=Physo156688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 725219 726295 . - 0 ID=Physo156688;Parent=Physo156688;rank=2 scaffold_24 . exon 725219 726295 . - . ID=Physo156688.2;Parent=Physo156688;constitutive=1;rank=2 scaffold_24 . CDS 726329 726613 . - 0 ID=Physo156688;Parent=Physo156688;rank=1 scaffold_24 . exon 726329 726613 . - . ID=Physo156688.1;Parent=Physo156688;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 726836 727149 . + . ID=Physo156691;biotype=protein_coding;external_name=C_scaffold_24000069;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 726836 727149 . + . ID=Physo156691;Parent=Physo156691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 726836 726959 . + 0 ID=Physo156691;Parent=Physo156691;rank=1 scaffold_24 . exon 726836 726959 . + . ID=Physo156691.1;Parent=Physo156691;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 727022 727149 . + 0 ID=Physo156691;Parent=Physo156691;rank=2 scaffold_24 . exon 727022 727149 . + . ID=Physo156691.2;Parent=Physo156691;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . biological_region 729547 729547 0.999 - . logic_name=eponine scaffold_24 . biological_region 730522 730527 0.999 - . logic_name=eponine scaffold_24 . biological_region 736146 736151 0.999 + . logic_name=eponine scaffold_24 . biological_region 736195 736197 0.999 - . logic_name=eponine scaffold_24 . biological_region 737064 737065 0.999 + . logic_name=eponine scaffold_24 . biological_region 737086 737092 0.999 + . logic_name=eponine scaffold_24 . biological_region 737190 737192 0.999 - . logic_name=eponine scaffold_24 ensembl protein_coding_gene 729014 729629 . + . ID=Physo108694;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240025;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 729014 729629 . + . ID=Physo108694;Parent=Physo108694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 729014 729057 . + . ID=Physo108694.1;Parent=Physo108694;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 729166 729501 . + 0 ID=Physo108694;Parent=Physo108694;rank=1 scaffold_24 . exon 729166 729629 . + . ID=Physo108694.2;Parent=Physo108694;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_24 ensembl protein_coding_gene 730631 731527 . + . ID=Physo108695;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_240026;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 730631 731527 . + . ID=Physo108695;Parent=Physo108695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 730631 731042 . + 0 ID=Physo108695;Parent=Physo108695;rank=1 scaffold_24 . exon 730631 731042 . + . ID=Physo108695.1;Parent=Physo108695;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . CDS 731121 731227 . + 0 ID=Physo108695;Parent=Physo108695;rank=2 scaffold_24 . exon 731121 731227 . + . ID=Physo108695.2;Parent=Physo108695;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 731261 731527 . + 0 ID=Physo108695;Parent=Physo108695;rank=3 scaffold_24 . exon 731261 731527 . + . ID=Physo108695.3;Parent=Physo108695;constitutive=1;rank=3 scaffold_24 ensembl protein_coding_gene 731655 732118 . - . ID=Physo115223;biotype=protein_coding;external_name=estExt_Genewise1.C_240160;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 731655 732118 . - . ID=Physo115223;Parent=Physo115223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . exon 731655 732118 . - . ID=Physo115223.1;Parent=Physo115223;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_24 . CDS 731813 732055 . - 0 ID=Physo115223;Parent=Physo115223;rank=1 scaffold_24 . exon 727915 728745 . + . ID=Physo133230.2;Parent=Physo133230;constitutive=1;rank=2 scaffold_24 ensembl protein_coding_gene 732278 733293 . + . ID=Physo133233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240202;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 732278 733293 . + . ID=Physo133233;Parent=Physo133233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 732278 732714 . + 0 ID=Physo133233;Parent=Physo133233;rank=1 scaffold_24 . exon 732278 732714 . + . ID=Physo133233.1;Parent=Physo133233;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 732786 732840 . + 0 ID=Physo133233;Parent=Physo133233;rank=2 scaffold_24 . exon 732786 732840 . + . ID=Physo133233.2;Parent=Physo133233;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 732921 733157 . + 0 ID=Physo133233;Parent=Physo133233;rank=3 scaffold_24 . exon 732921 733293 . + . ID=Physo133233.3;Parent=Physo133233;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_24 ensembl protein_coding_gene 733350 734677 . - . ID=Physo133234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240203;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 733350 734677 . - . ID=Physo133234;Parent=Physo133234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 733350 733939 . - 0 ID=Physo133234;Parent=Physo133234;rank=5 scaffold_24 . exon 733350 733939 . - . ID=Physo133234.5;Parent=Physo133234;constitutive=1;ensembl_phase=1;rank=5 scaffold_24 . CDS 734016 734090 . - 0 ID=Physo133234;Parent=Physo133234;rank=4 scaffold_24 . exon 734016 734090 . - . ID=Physo133234.4;Parent=Physo133234;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_24 . CDS 734161 734233 . - 0 ID=Physo133234;Parent=Physo133234;rank=3 scaffold_24 . exon 734161 734233 . - . ID=Physo133234.3;Parent=Physo133234;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_24 . CDS 734300 734461 . - 0 ID=Physo133234;Parent=Physo133234;rank=2 scaffold_24 . exon 734300 734461 . - . ID=Physo133234.2;Parent=Physo133234;constitutive=1;rank=2 scaffold_24 . CDS 734531 734626 . - 0 ID=Physo133234;Parent=Physo133234;rank=1 scaffold_24 . exon 734531 734677 . - . ID=Physo133234.1;Parent=Physo133234;constitutive=1;ensembl_phase=-1;rank=1 scaffold_24 ensembl protein_coding_gene 734822 736290 . - . ID=Physo133235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240204;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 734822 736290 . - . ID=Physo133235;Parent=Physo133235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 734822 735313 . - 0 ID=Physo133235;Parent=Physo133235;rank=3 scaffold_24 . exon 734822 735313 . - . ID=Physo133235.3;Parent=Physo133235;constitutive=1;rank=3 scaffold_24 . CDS 735381 735814 . - 0 ID=Physo133235;Parent=Physo133235;rank=2 scaffold_24 . exon 735381 735814 . - . ID=Physo133235.2;Parent=Physo133235;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 735885 736290 . - 0 ID=Physo133235;Parent=Physo133235;rank=1 scaffold_24 . exon 735885 736290 . - . ID=Physo133235.1;Parent=Physo133235;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 736487 738525 . + . ID=Physo133236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240205;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 736487 738525 . + . ID=Physo133236;Parent=Physo133236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 736487 737673 . + 0 ID=Physo133236;Parent=Physo133236;rank=1 scaffold_24 . exon 736487 737673 . + . ID=Physo133236.1;Parent=Physo133236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 737783 737834 . + 0 ID=Physo133236;Parent=Physo133236;rank=2 scaffold_24 . CDS 737980 738273 . + 0 ID=Physo133236;Parent=Physo133236;rank=3 scaffold_24 ensembl protein_coding_gene 730039 730516 . - . ID=Physo156694;biotype=protein_coding;external_name=C_scaffold_24000072;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 730039 730516 . - . ID=Physo156694;Parent=Physo156694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 730039 730047 . - 0 ID=Physo156694;Parent=Physo156694;rank=3 scaffold_24 . exon 730039 730047 . - . ID=Physo156694.3;Parent=Physo156694;constitutive=1;rank=3 scaffold_24 . CDS 730100 730161 . - 0 ID=Physo156694;Parent=Physo156694;rank=2 scaffold_24 . exon 730100 730161 . - . ID=Physo156694.2;Parent=Physo156694;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 730252 730516 . - 0 ID=Physo156694;Parent=Physo156694;rank=1 scaffold_24 . exon 730252 730516 . - . ID=Physo156694.1;Parent=Physo156694;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 . repeat_region 739018 739104 . + . description=(CTG)n scaffold_24 . repeat_region 739029 739086 . ? . description=dust scaffold_24 . repeat_region 743277 743332 . ? . description=trf scaffold_24 . exon 737783 737834 . + . ID=Physo133236.2;Parent=Physo133236;constitutive=1;ensembl_phase=2;rank=2 scaffold_24 . exon 737980 738525 . + . ID=Physo133236.3;Parent=Physo133236;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_24 ensembl protein_coding_gene 738723 740691 . - . ID=Physo133237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240206;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 738723 740691 . - . ID=Physo133237;Parent=Physo133237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 738723 740144 . - 0 ID=Physo133237;Parent=Physo133237;rank=3 scaffold_24 . exon 738723 740144 . - . ID=Physo133237.3;Parent=Physo133237;constitutive=1;rank=3 scaffold_24 . CDS 740223 740260 . - 0 ID=Physo133237;Parent=Physo133237;rank=2 scaffold_24 . exon 740223 740260 . - . ID=Physo133237.2;Parent=Physo133237;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 740334 740691 . - 0 ID=Physo133237;Parent=Physo133237;rank=1 scaffold_24 . exon 740334 740691 . - . ID=Physo133237.1;Parent=Physo133237;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 745887 747182 . + . ID=Physo133238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240207;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 745887 747182 . + . ID=Physo133238;Parent=Physo133238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 745887 747182 . + 0 ID=Physo133238;Parent=Physo133238;rank=1 scaffold_24 . exon 745887 747182 . + . ID=Physo133238.1;Parent=Physo133238;constitutive=1;rank=1 scaffold_24 . biological_region 749338 749338 0.999 - . logic_name=eponine scaffold_24 . biological_region 749960 749961 0.999 - . logic_name=eponine scaffold_24 . biological_region 750197 750200 0.999 - . logic_name=eponine scaffold_24 . biological_region 750891 750897 0.999 + . logic_name=eponine scaffold_24 . biological_region 751552 751553 0.999 + . logic_name=eponine scaffold_24 . repeat_region 751622 753972 . + . description=GypsyPi-1c_I-int scaffold_24 . biological_region 753141 753146 0.999 - . logic_name=eponine scaffold_24 . biological_region 755523 755525 0.999 - . logic_name=eponine scaffold_24 . biological_region 756059 756061 0.999 + . logic_name=eponine scaffold_24 . biological_region 756206 756211 0.999 + . logic_name=eponine scaffold_24 ensembl pseudogenic_tRNA 756042 756113 . - . ID=EPrPSOG00000000018;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_24 ensembl transcript 756042 756113 . - . ID=EPrPSOT00000000018;Parent=EPrPSOG00000000018;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_24 . exon 756042 756113 . - . ID=EPrPSOE00000000018;Parent=EPrPSOT00000000018;constitutive=1;rank=1 scaffold_24 ensembl protein_coding_gene 749146 755981 . + . ID=Physo133239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240208;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 749146 755981 . + . ID=Physo133239;Parent=Physo133239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 749146 749906 . + 0 ID=Physo133239;Parent=Physo133239;rank=1 scaffold_24 . exon 749146 749906 . + . ID=Physo133239.1;Parent=Physo133239;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 750061 750161 . + 0 ID=Physo133239;Parent=Physo133239;rank=2 scaffold_24 . exon 750061 750161 . + . ID=Physo133239.2;Parent=Physo133239;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 750349 750575 . + 0 ID=Physo133239;Parent=Physo133239;rank=3 scaffold_24 . exon 750349 750575 . + . ID=Physo133239.3;Parent=Physo133239;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 750599 750645 . + 0 ID=Physo133239;Parent=Physo133239;rank=4 scaffold_24 . exon 750599 750645 . + . ID=Physo133239.4;Parent=Physo133239;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_24 . CDS 750741 751641 . + 0 ID=Physo133239;Parent=Physo133239;rank=5 scaffold_24 . exon 750741 751641 . + . ID=Physo133239.5;Parent=Physo133239;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 . CDS 751696 751764 . + 0 ID=Physo133239;Parent=Physo133239;rank=6 scaffold_24 . exon 751696 751764 . + . ID=Physo133239.6;Parent=Physo133239;constitutive=1;rank=6 scaffold_24 . CDS 751890 752302 . + 0 ID=Physo133239;Parent=Physo133239;rank=7 scaffold_24 . exon 751890 752302 . + . ID=Physo133239.7;Parent=Physo133239;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_24 . CDS 752374 752761 . + 0 ID=Physo133239;Parent=Physo133239;rank=8 scaffold_24 . exon 752374 752761 . + . ID=Physo133239.8;Parent=Physo133239;constitutive=1;ensembl_phase=2;rank=8 scaffold_24 . CDS 752800 753369 . + 0 ID=Physo133239;Parent=Physo133239;rank=9 scaffold_24 . exon 752800 753369 . + . ID=Physo133239.9;Parent=Physo133239;constitutive=1;rank=9 scaffold_24 . CDS 753454 753721 . + 0 ID=Physo133239;Parent=Physo133239;rank=10 scaffold_24 . exon 753454 753721 . + . ID=Physo133239.10;Parent=Physo133239;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_24 . CDS 753771 754424 . + 0 ID=Physo133239;Parent=Physo133239;rank=11 scaffold_24 . exon 753771 754424 . + . ID=Physo133239.11;Parent=Physo133239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_24 . CDS 755413 755981 . + 0 ID=Physo133239;Parent=Physo133239;rank=12 scaffold_24 . exon 755413 755981 . + . ID=Physo133239.12;Parent=Physo133239;constitutive=1;ensembl_phase=1;rank=12 scaffold_24 . repeat_region 758591 758599 . ? . description=dust scaffold_24 . repeat_region 763253 764467 . ? . description=dust scaffold_24 . repeat_region 764944 764952 . ? . description=dust scaffold_24 . repeat_region 766573 766609 . ? . description=trf scaffold_24 ensembl protein_coding_gene 760341 763186 . + . ID=Physo133240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240209;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 760341 763186 . + . ID=Physo133240;Parent=Physo133240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 760341 760577 . + 0 ID=Physo133240;Parent=Physo133240;rank=1 scaffold_24 . exon 760341 760577 . + . ID=Physo133240.1;Parent=Physo133240;constitutive=1;rank=1 scaffold_24 . CDS 760625 761212 . + 0 ID=Physo133240;Parent=Physo133240;rank=2 scaffold_24 . exon 760625 761212 . + . ID=Physo133240.2;Parent=Physo133240;constitutive=1;rank=2 scaffold_24 . CDS 761238 762619 . + 0 ID=Physo133240;Parent=Physo133240;rank=3 scaffold_24 . exon 761238 762619 . + . ID=Physo133240.3;Parent=Physo133240;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_24 . CDS 762654 763112 . + 0 ID=Physo133240;Parent=Physo133240;rank=4 scaffold_24 . exon 762654 763112 . + . ID=Physo133240.4;Parent=Physo133240;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_24 . CDS 763150 763186 . + 0 ID=Physo133240;Parent=Physo133240;rank=5 scaffold_24 . exon 763150 763186 . + . ID=Physo133240.5;Parent=Physo133240;constitutive=1;ensembl_phase=2;rank=5 scaffold_24 ensembl protein_coding_gene 766959 770198 . + . ID=Physo133241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240210;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 766959 770198 . + . ID=Physo133241;Parent=Physo133241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 766959 767882 . + 0 ID=Physo133241;Parent=Physo133241;rank=1 scaffold_24 . exon 766959 767882 . + . ID=Physo133241.1;Parent=Physo133241;constitutive=1;rank=1 scaffold_24 . CDS 767981 768457 . + 0 ID=Physo133241;Parent=Physo133241;rank=2 scaffold_24 . CDS 769019 769231 . + 0 ID=Physo133241;Parent=Physo133241;rank=3 scaffold_24 . CDS 769305 770198 . + 0 ID=Physo133241;Parent=Physo133241;rank=4 scaffold_24 . biological_region 767600 767600 0.999 + . logic_name=eponine scaffold_24 . biological_region 767613 767617 0.999 + . logic_name=eponine scaffold_24 . biological_region 767809 767815 0.999 - . logic_name=eponine scaffold_24 . biological_region 768153 768154 0.999 - . logic_name=eponine scaffold_24 . biological_region 768373 768379 0.999 - . logic_name=eponine scaffold_24 . biological_region 768443 768445 0.999 - . logic_name=eponine scaffold_24 . biological_region 768962 768964 0.999 + . logic_name=eponine scaffold_24 . biological_region 768985 768988 0.999 - . logic_name=eponine scaffold_24 . biological_region 768996 768997 0.999 - . logic_name=eponine scaffold_24 . biological_region 769020 769030 0.999 + . logic_name=eponine scaffold_24 . biological_region 769078 769080 0.999 - . logic_name=eponine scaffold_24 . biological_region 769085 769090 0.999 + . logic_name=eponine scaffold_24 . biological_region 769108 769122 0.999 - . logic_name=eponine scaffold_24 . biological_region 769134 769137 0.999 - . logic_name=eponine scaffold_24 . biological_region 769176 769189 0.999 - . logic_name=eponine scaffold_24 . biological_region 769190 769194 0.999 + . logic_name=eponine scaffold_24 . biological_region 769341 769345 0.999 - . logic_name=eponine scaffold_24 . biological_region 769637 769639 0.999 + . logic_name=eponine scaffold_24 . biological_region 770053 770057 0.999 - . logic_name=eponine scaffold_24 . biological_region 772354 772355 0.999 - . logic_name=eponine scaffold_24 . biological_region 772835 772835 0.999 + . logic_name=eponine scaffold_24 . biological_region 773820 773825 0.999 - . logic_name=eponine scaffold_24 . biological_region 774340 774344 0.999 + . logic_name=eponine scaffold_24 . biological_region 774529 774535 0.999 - . logic_name=eponine scaffold_24 . biological_region 775146 775154 0.999 + . logic_name=eponine scaffold_24 . biological_region 775670 775673 0.999 + . logic_name=eponine scaffold_24 . biological_region 775677 775679 0.999 - . logic_name=eponine scaffold_24 . biological_region 775694 775695 0.999 - . logic_name=eponine scaffold_24 . biological_region 775715 775720 0.999 + . logic_name=eponine scaffold_24 . biological_region 775762 775765 0.999 - . logic_name=eponine scaffold_24 . biological_region 775809 775812 0.999 - . logic_name=eponine scaffold_24 . biological_region 775992 775993 0.999 - . logic_name=eponine scaffold_24 . biological_region 776276 776281 0.999 + . logic_name=eponine scaffold_24 . biological_region 776675 776677 0.999 + . logic_name=eponine scaffold_24 . biological_region 776826 776831 0.999 + . logic_name=eponine scaffold_24 . biological_region 776888 776890 0.999 + . logic_name=eponine scaffold_24 . exon 767981 768457 . + . ID=Physo133241.2;Parent=Physo133241;constitutive=1;rank=2 scaffold_24 . exon 769019 769231 . + . ID=Physo133241.3;Parent=Physo133241;constitutive=1;rank=3 scaffold_24 . exon 769305 770198 . + . ID=Physo133241.4;Parent=Physo133241;constitutive=1;rank=4 scaffold_24 ensembl protein_coding_gene 771429 777656 . - . ID=Physo133242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240211;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 771429 777656 . - . ID=Physo133242;Parent=Physo133242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 771429 773819 . - 0 ID=Physo133242;Parent=Physo133242;rank=4 scaffold_24 . exon 771429 773819 . - . ID=Physo133242.4;Parent=Physo133242;constitutive=1;rank=4 scaffold_24 . CDS 773890 775229 . - 0 ID=Physo133242;Parent=Physo133242;rank=3 scaffold_24 . exon 773890 775229 . - . ID=Physo133242.3;Parent=Physo133242;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 775518 777351 . - 0 ID=Physo133242;Parent=Physo133242;rank=2 scaffold_24 . exon 775518 777351 . - . ID=Physo133242.2;Parent=Physo133242;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 777408 777656 . - 0 ID=Physo133242;Parent=Physo133242;rank=1 scaffold_24 . exon 777408 777656 . - . ID=Physo133242.1;Parent=Physo133242;constitutive=1;rank=1 scaffold_24 . repeat_region 777889 777958 . ? . description=trf scaffold_24 . repeat_region 778363 778465 . ? . description=trf scaffold_24 . repeat_region 778364 778465 . ? . description=trf scaffold_24 . repeat_region 778576 778619 . ? . description=trf scaffold_24 . repeat_region 778593 778637 . ? . description=trf scaffold_24 . repeat_region 779261 779268 . ? . description=dust scaffold_24 ensembl protein_coding_gene 778766 781109 . + . ID=Physo133243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240212;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 778766 781109 . + . ID=Physo133243;Parent=Physo133243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 778766 778837 . + 0 ID=Physo133243;Parent=Physo133243;rank=1 scaffold_24 . exon 778766 778837 . + . ID=Physo133243.1;Parent=Physo133243;constitutive=1;rank=1 scaffold_24 . CDS 778917 779037 . + 0 ID=Physo133243;Parent=Physo133243;rank=2 scaffold_24 . exon 778917 779037 . + . ID=Physo133243.2;Parent=Physo133243;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_24 . CDS 779163 779482 . + 0 ID=Physo133243;Parent=Physo133243;rank=3 scaffold_24 . exon 779163 779482 . + . ID=Physo133243.3;Parent=Physo133243;constitutive=1;ensembl_phase=1;rank=3 scaffold_24 . CDS 779575 780291 . + 0 ID=Physo133243;Parent=Physo133243;rank=4 scaffold_24 . exon 779575 780291 . + . ID=Physo133243.4;Parent=Physo133243;constitutive=1;rank=4 scaffold_24 . CDS 780378 781109 . + 0 ID=Physo133243;Parent=Physo133243;rank=5 scaffold_24 . exon 780378 781109 . + . ID=Physo133243.5;Parent=Physo133243;constitutive=1;rank=5 scaffold_24 ensembl protein_coding_gene 785594 789494 . + . ID=Physo133244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240213;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 785594 789494 . + . ID=Physo133244;Parent=Physo133244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 785594 785802 . + 0 ID=Physo133244;Parent=Physo133244;rank=1 scaffold_24 . exon 785594 785802 . + . ID=Physo133244.1;Parent=Physo133244;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_24 . CDS 785916 787228 . + 0 ID=Physo133244;Parent=Physo133244;rank=2 scaffold_24 . exon 785916 787228 . + . ID=Physo133244.2;Parent=Physo133244;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_24 . CDS 787619 788458 . + 0 ID=Physo133244;Parent=Physo133244;rank=3 scaffold_24 . CDS 788593 789494 . + 0 ID=Physo133244;Parent=Physo133244;rank=4 scaffold_24 . biological_region 788833 788834 0.999 - . logic_name=eponine scaffold_24 . biological_region 789075 789075 0.999 + . logic_name=eponine scaffold_24 . biological_region 796206 796210 0.999 - . logic_name=eponine scaffold_24 . biological_region 796262 796268 0.999 + . logic_name=eponine scaffold_24 . biological_region 796430 796433 0.999 + . logic_name=eponine scaffold_24 . exon 787619 788458 . + . ID=Physo133244.3;Parent=Physo133244;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_24 . exon 788593 789494 . + . ID=Physo133244.4;Parent=Physo133244;constitutive=1;ensembl_phase=1;rank=4 scaffold_24 ensembl protein_coding_gene 789764 790805 . - . ID=Physo133245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240214;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 789764 790805 . - . ID=Physo133245;Parent=Physo133245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 789764 790086 . - 0 ID=Physo133245;Parent=Physo133245;rank=2 scaffold_24 . exon 789764 790086 . - . ID=Physo133245.2;Parent=Physo133245;constitutive=1;ensembl_phase=1;rank=2 scaffold_24 . CDS 790148 790805 . - 0 ID=Physo133245;Parent=Physo133245;rank=1 scaffold_24 . exon 790148 790805 . - . ID=Physo133245.1;Parent=Physo133245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_24 ensembl protein_coding_gene 796238 797345 . + . ID=Physo133246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_240215;logic_name=jgi_physo1_1 scaffold_24 ensembl transcript 796238 797345 . + . ID=Physo133246;Parent=Physo133246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_24 . CDS 796238 797344 . + 0 ID=Physo133246;Parent=Physo133246;rank=1 scaffold_24 . exon 796238 797345 . + . ID=Physo133246.1;Parent=Physo133246;constitutive=1;ensembl_end_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_23 1 809585 scaffold_23 . biological_region 910 913 0.999 - . logic_name=eponine scaffold_23 . biological_region 1772 1774 0.999 - . logic_name=eponine scaffold_23 . biological_region 1825 1833 0.999 + . logic_name=eponine scaffold_23 . biological_region 2744 2746 0.999 + . logic_name=eponine scaffold_23 . biological_region 2775 2778 0.999 - . logic_name=eponine scaffold_23 . biological_region 2813 2818 0.999 + . logic_name=eponine scaffold_23 . biological_region 2832 2833 0.999 + . logic_name=eponine scaffold_23 . biological_region 3056 3059 0.999 - . logic_name=eponine scaffold_23 . biological_region 3681 3684 0.999 - . logic_name=eponine scaffold_23 . repeat_region 5651 5661 . ? . description=dust scaffold_23 . repeat_region 6535 6756 . ? . description=trf scaffold_23 . repeat_region 6553 6756 . ? . description=trf scaffold_23 . repeat_region 7606 7661 . ? . description=trf scaffold_23 . repeat_region 7638 7713 . ? . description=trf scaffold_23 . repeat_region 8188 8195 . ? . description=dust scaffold_23 . repeat_region 9697 9790 . ? . description=trf scaffold_23 ensembl protein_coding_gene 370 1611 . - . ID=Physo132858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230001;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 370 1611 . - . ID=Physo132858;Parent=Physo132858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 370 1611 . - . ID=Physo132858.1;Parent=Physo132858;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_23 . CDS 373 1611 . - 0 ID=Physo132858;Parent=Physo132858;rank=1 scaffold_23 ensembl protein_coding_gene 2311 3814 . - . ID=Physo132859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230002;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 2311 3814 . - . ID=Physo132859;Parent=Physo132859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 2311 3814 . - . ID=Physo132859.1;Parent=Physo132859;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 2519 3757 . - 0 ID=Physo132859;Parent=Physo132859;rank=1 scaffold_23 ensembl protein_coding_gene 6538 6900 . + . ID=Physo132860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230003;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 6538 6900 . + . ID=Physo132860;Parent=Physo132860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 6538 6900 . + 0 ID=Physo132860;Parent=Physo132860;rank=1 scaffold_23 . exon 6538 6900 . + . ID=Physo132860.1;Parent=Physo132860;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 13312 13790 . + . ID=Physo108651;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230001;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 13312 13790 . + . ID=Physo108651;Parent=Physo108651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 13312 13350 . + 0 ID=Physo108651;Parent=Physo108651;rank=1 scaffold_23 . exon 13312 13350 . + . ID=Physo108651.1;Parent=Physo108651;constitutive=1;rank=1 scaffold_23 . CDS 13449 13790 . + 0 ID=Physo108651;Parent=Physo108651;rank=2 scaffold_23 . exon 13449 13790 . + . ID=Physo108651.2;Parent=Physo108651;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 12155 12912 . - . ID=Physo132861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230004;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 12155 12912 . - . ID=Physo132861;Parent=Physo132861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 12155 12179 . - 0 ID=Physo132861;Parent=Physo132861;rank=2 scaffold_23 . exon 12155 12179 . - . ID=Physo132861.2;Parent=Physo132861;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 12203 12912 . - 0 ID=Physo132861;Parent=Physo132861;rank=1 scaffold_23 . exon 12203 12912 . - . ID=Physo132861.1;Parent=Physo132861;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 13899 14660 . - . ID=Physo132863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230006;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 13899 14660 . - . ID=Physo132863;Parent=Physo132863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 13899 14660 . - 0 ID=Physo132863;Parent=Physo132863;rank=1 scaffold_23 . exon 13899 14660 . - . ID=Physo132863.1;Parent=Physo132863;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 17181 18338 . + . ID=Physo132864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230007;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 17181 18338 . + . ID=Physo132864;Parent=Physo132864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 17181 18082 . + 0 ID=Physo132864;Parent=Physo132864;rank=1 scaffold_23 . exon 17181 18082 . + . ID=Physo132864.1;Parent=Physo132864;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 18152 18338 . + 0 ID=Physo132864;Parent=Physo132864;rank=2 scaffold_23 . exon 18152 18338 . + . ID=Physo132864.2;Parent=Physo132864;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . repeat_region 20629 20641 . ? . description=dust scaffold_23 . repeat_region 22500 23325 . ? . description=trf scaffold_23 . repeat_region 23063 23590 . ? . description=trf scaffold_23 . repeat_region 23328 24129 . ? . description=trf scaffold_23 . biological_region 33697 33704 0.999 - . logic_name=eponine scaffold_23 . biological_region 39380 39383 0.999 + . logic_name=eponine scaffold_23 . biological_region 39413 39417 0.999 + . logic_name=eponine scaffold_23 . biological_region 39472 39473 0.999 + . logic_name=eponine scaffold_23 . biological_region 39484 39494 0.999 - . logic_name=eponine scaffold_23 . repeat_region 40840 40860 . ? . description=trf scaffold_23 . repeat_region 40840 40893 . ? . description=dust scaffold_23 . repeat_region 43594 43622 . ? . description=trf scaffold_23 . repeat_region 46767 46809 . ? . description=trf scaffold_23 ensembl protein_coding_gene 40909 42210 . + . ID=Physo132865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230008;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 40909 42210 . + . ID=Physo132865;Parent=Physo132865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 40909 42210 . + 0 ID=Physo132865;Parent=Physo132865;rank=1 scaffold_23 . exon 40909 42210 . + . ID=Physo132865.1;Parent=Physo132865;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 42482 43944 . - . ID=Physo132866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230009;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 42482 43944 . - . ID=Physo132866;Parent=Physo132866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 42482 43399 . - 0 ID=Physo132866;Parent=Physo132866;rank=2 scaffold_23 . exon 42482 43399 . - . ID=Physo132866.2;Parent=Physo132866;constitutive=1;rank=2 scaffold_23 . CDS 43474 43944 . - 0 ID=Physo132866;Parent=Physo132866;rank=1 scaffold_23 . exon 43474 43944 . - . ID=Physo132866.1;Parent=Physo132866;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 47814 48347 . - . ID=Physo132867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230010;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 47814 48347 . - . ID=Physo132867;Parent=Physo132867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 47814 48347 . - 0 ID=Physo132867;Parent=Physo132867;rank=1 scaffold_23 . exon 47814 48347 . - . ID=Physo132867.1;Parent=Physo132867;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 49562 53382 . - . ID=Physo132868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230011;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 49562 53382 . - . ID=Physo132868;Parent=Physo132868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 49562 49717 . - 0 ID=Physo132868;Parent=Physo132868;rank=3 scaffold_23 . exon 49562 49717 . - . ID=Physo132868.3;Parent=Physo132868;constitutive=1;rank=3 scaffold_23 . CDS 49801 50126 . - 0 ID=Physo132868;Parent=Physo132868;rank=2 scaffold_23 . exon 49801 50126 . - . ID=Physo132868.2;Parent=Physo132868;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 50502 53382 . - 0 ID=Physo132868;Parent=Physo132868;rank=1 scaffold_23 . biological_region 51434 51436 0.999 - . logic_name=eponine scaffold_23 . biological_region 52436 52438 0.999 + . logic_name=eponine scaffold_23 . biological_region 53044 53045 0.999 + . logic_name=eponine scaffold_23 . biological_region 53049 53053 0.999 + . logic_name=eponine scaffold_23 . biological_region 53101 53104 0.999 - . logic_name=eponine scaffold_23 . biological_region 53205 53208 0.999 - . logic_name=eponine scaffold_23 . biological_region 53245 53250 0.999 + . logic_name=eponine scaffold_23 . biological_region 53281 53288 0.999 + . logic_name=eponine scaffold_23 . biological_region 53287 53295 0.999 - . logic_name=eponine scaffold_23 . biological_region 53446 53451 0.999 - . logic_name=eponine scaffold_23 . biological_region 59076 59079 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 55187 55719 . + . ID=Physo108652;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84LB1];external_name=estExt_fgenesh1_pm.C_230002;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 55187 55719 . + . ID=Physo108652;Parent=Physo108652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 55187 55719 . + . ID=Physo108652.1;Parent=Physo108652;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 55232 55645 . + 0 ID=Physo108652;Parent=Physo108652;rank=1 scaffold_23 . exon 50502 53382 . - . ID=Physo132868.1;Parent=Physo132868;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 57800 58809 . - . ID=Physo132870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230013;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 57800 58809 . - . ID=Physo132870;Parent=Physo132870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 57800 58633 . - 0 ID=Physo132870;Parent=Physo132870;rank=2 scaffold_23 . exon 57800 58633 . - . ID=Physo132870.2;Parent=Physo132870;constitutive=1;rank=2 scaffold_23 . CDS 58711 58809 . - 0 ID=Physo132870;Parent=Physo132870;rank=1 scaffold_23 . exon 58711 58809 . - . ID=Physo132870.1;Parent=Physo132870;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 59204 60011 . + . ID=Physo132871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230014;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 59204 60011 . + . ID=Physo132871;Parent=Physo132871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 59204 59758 . + 0 ID=Physo132871;Parent=Physo132871;rank=1 scaffold_23 . exon 59204 59758 . + . ID=Physo132871.1;Parent=Physo132871;constitutive=1;rank=1 scaffold_23 . CDS 59886 60011 . + 0 ID=Physo132871;Parent=Physo132871;rank=2 scaffold_23 . exon 59886 60011 . + . ID=Physo132871.2;Parent=Physo132871;constitutive=1;rank=2 scaffold_23 . repeat_region 65588 65646 . ? . description=trf scaffold_23 ensembl protein_coding_gene 69761 71110 . + . ID=Physo132872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230015;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 69761 71110 . + . ID=Physo132872;Parent=Physo132872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 69761 70038 . + 0 ID=Physo132872;Parent=Physo132872;rank=1 scaffold_23 . exon 69761 70038 . + . ID=Physo132872.1;Parent=Physo132872;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 70265 70314 . + 0 ID=Physo132872;Parent=Physo132872;rank=2 scaffold_23 . CDS 70791 71110 . + 0 ID=Physo132872;Parent=Physo132872;rank=3 scaffold_23 . biological_region 71456 71460 0.999 + . logic_name=eponine scaffold_23 . biological_region 71661 71664 0.999 - . logic_name=eponine scaffold_23 . biological_region 72350 72354 0.999 - . logic_name=eponine scaffold_23 . biological_region 72458 72462 0.999 - . logic_name=eponine scaffold_23 . biological_region 72513 72518 0.999 + . logic_name=eponine scaffold_23 . biological_region 72562 72566 0.999 + . logic_name=eponine scaffold_23 . repeat_region 72880 75195 . - . description=GypsyPi-1c_I-int scaffold_23 . biological_region 73613 73615 0.999 + . logic_name=eponine scaffold_23 . biological_region 75196 75197 0.999 - . logic_name=eponine scaffold_23 . biological_region 75302 75306 0.999 - . logic_name=eponine scaffold_23 . biological_region 75342 75345 0.999 + . logic_name=eponine scaffold_23 . biological_region 76397 76400 0.999 - . logic_name=eponine scaffold_23 . biological_region 76672 76676 0.999 - . logic_name=eponine scaffold_23 . biological_region 76727 76733 0.999 + . logic_name=eponine scaffold_23 . biological_region 76894 76898 0.999 + . logic_name=eponine scaffold_23 . biological_region 79511 79515 0.999 - . logic_name=eponine scaffold_23 . exon 70265 70314 . + . ID=Physo132872.2;Parent=Physo132872;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . exon 70791 71110 . + . ID=Physo132872.3;Parent=Physo132872;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 ensembl protein_coding_gene 71687 76383 . - . ID=Physo132873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230016;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 71687 76383 . - . ID=Physo132873;Parent=Physo132873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 71687 72160 . - 0 ID=Physo132873;Parent=Physo132873;rank=2 scaffold_23 . exon 71687 72160 . - . ID=Physo132873.2;Parent=Physo132873;constitutive=1;rank=2 scaffold_23 . CDS 72271 76383 . - 0 ID=Physo132873;Parent=Physo132873;rank=1 scaffold_23 . exon 72271 76383 . - . ID=Physo132873.1;Parent=Physo132873;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 77420 81514 . + . ID=Physo132874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230017;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 77420 81514 . + . ID=Physo132874;Parent=Physo132874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 77420 81514 . + 0 ID=Physo132874;Parent=Physo132874;rank=1 scaffold_23 . exon 77420 81514 . + . ID=Physo132874.1;Parent=Physo132874;constitutive=1;rank=1 scaffold_23 . repeat_region 81577 81612 . ? . description=trf scaffold_23 . repeat_region 81673 81725 . ? . description=trf scaffold_23 . repeat_region 81673 81725 . ? . description=trf scaffold_23 . repeat_region 84260 84269 . ? . description=dust scaffold_23 . repeat_region 85972 85979 . ? . description=dust scaffold_23 ensembl protein_coding_gene 81773 82456 . - . ID=Physo132875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230018;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 81773 82456 . - . ID=Physo132875;Parent=Physo132875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 81773 82456 . - 0 ID=Physo132875;Parent=Physo132875;rank=1 scaffold_23 . exon 81773 82456 . - . ID=Physo132875.1;Parent=Physo132875;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 82769 83110 . + . ID=Physo132876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230019;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 82769 83110 . + . ID=Physo132876;Parent=Physo132876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 82769 83110 . + 0 ID=Physo132876;Parent=Physo132876;rank=1 scaffold_23 . exon 82769 83110 . + . ID=Physo132876.1;Parent=Physo132876;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 88904 93562 . - . ID=Physo156600;biotype=protein_coding;external_name=C_scaffold_23000001;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 88904 93562 . - . ID=Physo156600;Parent=Physo156600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 88904 88946 . - 0 ID=Physo156600;Parent=Physo156600;rank=14 scaffold_23 . exon 88904 88946 . - . ID=Physo156600.14;Parent=Physo156600;constitutive=1;ensembl_phase=2;rank=14 scaffold_23 . CDS 89080 89764 . - 0 ID=Physo156600;Parent=Physo156600;rank=13 scaffold_23 . exon 89080 89764 . - . ID=Physo156600.13;Parent=Physo156600;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_23 . CDS 90023 90088 . - 0 ID=Physo156600;Parent=Physo156600;rank=12 scaffold_23 . CDS 90122 90188 . - 0 ID=Physo156600;Parent=Physo156600;rank=11 scaffold_23 . CDS 90255 90613 . - 0 ID=Physo156600;Parent=Physo156600;rank=10 scaffold_23 . CDS 90763 90763 . - 0 ID=Physo156600;Parent=Physo156600;rank=9 scaffold_23 . CDS 90837 90967 . - 0 ID=Physo156600;Parent=Physo156600;rank=8 scaffold_23 . CDS 91142 91585 . - 0 ID=Physo156600;Parent=Physo156600;rank=7 scaffold_23 . CDS 91916 91991 . - 0 ID=Physo156600;Parent=Physo156600;rank=6 scaffold_23 . CDS 92091 92242 . - 0 ID=Physo156600;Parent=Physo156600;rank=5 scaffold_23 . CDS 92375 92801 . - 0 ID=Physo156600;Parent=Physo156600;rank=4 scaffold_23 . CDS 92869 93243 . - 0 ID=Physo156600;Parent=Physo156600;rank=3 scaffold_23 . CDS 93318 93436 . - 0 ID=Physo156600;Parent=Physo156600;rank=2 scaffold_23 . CDS 93538 93562 . - 0 ID=Physo156600;Parent=Physo156600;rank=1 scaffold_23 . biological_region 90882 90883 0.999 - . logic_name=eponine scaffold_23 . biological_region 94462 94466 0.999 - . logic_name=eponine scaffold_23 . biological_region 95573 95573 0.999 + . logic_name=eponine scaffold_23 . biological_region 95616 95618 0.999 - . logic_name=eponine scaffold_23 . biological_region 96205 96209 0.999 + . logic_name=eponine scaffold_23 . biological_region 96596 96602 0.999 - . logic_name=eponine scaffold_23 . biological_region 96680 96681 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 94803 96555 . - . ID=Physo108653;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230003;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 94803 96555 . - . ID=Physo108653;Parent=Physo108653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 94803 96402 . - . ID=Physo108653.2;Parent=Physo108653;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_23 . CDS 95143 96402 . - 0 ID=Physo108653;Parent=Physo108653;rank=2 scaffold_23 . CDS 96451 96555 . - 0 ID=Physo108653;Parent=Physo108653;rank=1 scaffold_23 . exon 96451 96555 . - . ID=Physo108653.1;Parent=Physo108653;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 93866 94618 . + . ID=Physo115048;biotype=protein_coding;external_name=estExt_Genewise1.C_230123;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 93866 94618 . + . ID=Physo115048;Parent=Physo115048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 93866 93885 . + . ID=Physo115048.1;Parent=Physo115048;constitutive=1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 93883 93885 . + 0 ID=Physo115048;Parent=Physo115048;rank=1 scaffold_23 . CDS 94181 94465 . + 0 ID=Physo115048;Parent=Physo115048;rank=2 scaffold_23 . exon 94181 94618 . + . ID=Physo115048.2;Parent=Physo115048;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_23 ensembl protein_coding_gene 99138 100396 . + . ID=Physo132879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230022;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 99138 100396 . + . ID=Physo132879;Parent=Physo132879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 99138 99382 . + 0 ID=Physo132879;Parent=Physo132879;rank=1 scaffold_23 . exon 99138 99382 . + . ID=Physo132879.1;Parent=Physo132879;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 99500 99803 . + 0 ID=Physo132879;Parent=Physo132879;rank=2 scaffold_23 . exon 99500 99803 . + . ID=Physo132879.2;Parent=Physo132879;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 99859 100266 . + 0 ID=Physo132879;Parent=Physo132879;rank=3 scaffold_23 . exon 99859 100266 . + . ID=Physo132879.3;Parent=Physo132879;constitutive=1;rank=3 scaffold_23 . CDS 100352 100396 . + 0 ID=Physo132879;Parent=Physo132879;rank=4 scaffold_23 . exon 90023 90088 . - . ID=Physo156600.12;Parent=Physo156600;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_23 . exon 90122 90188 . - . ID=Physo156600.11;Parent=Physo156600;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_23 . exon 90255 90613 . - . ID=Physo156600.10;Parent=Physo156600;constitutive=1;ensembl_phase=1;rank=10 scaffold_23 . exon 90763 90763 . - . ID=Physo156600.9;Parent=Physo156600;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_23 . exon 90837 90967 . - . ID=Physo156600.8;Parent=Physo156600;constitutive=1;ensembl_phase=1;rank=8 scaffold_23 . exon 91142 91585 . - . ID=Physo156600.7;Parent=Physo156600;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_23 . exon 91916 91991 . - . ID=Physo156600.6;Parent=Physo156600;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_23 . exon 92091 92242 . - . ID=Physo156600.5;Parent=Physo156600;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 . exon 92375 92801 . - . ID=Physo156600.4;Parent=Physo156600;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_23 . exon 92869 93243 . - . ID=Physo156600.3;Parent=Physo156600;constitutive=1;rank=3 scaffold_23 . exon 93318 93436 . - . ID=Physo156600.2;Parent=Physo156600;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . exon 93538 93562 . - . ID=Physo156600.1;Parent=Physo156600;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . repeat_region 102069 102081 . ? . description=dust scaffold_23 . repeat_region 109600 109619 . ? . description=trf scaffold_23 . exon 100352 100396 . + . ID=Physo132879.4;Parent=Physo132879;constitutive=1;rank=4 scaffold_23 ensembl protein_coding_gene 100747 103733 . - . ID=Physo132880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230023;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 100747 103733 . - . ID=Physo132880;Parent=Physo132880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 100747 101821 . - 0 ID=Physo132880;Parent=Physo132880;rank=3 scaffold_23 . exon 100747 101821 . - . ID=Physo132880.3;Parent=Physo132880;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 102613 103041 . - 0 ID=Physo132880;Parent=Physo132880;rank=2 scaffold_23 . exon 102613 103041 . - . ID=Physo132880.2;Parent=Physo132880;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_23 . CDS 103264 103733 . - 0 ID=Physo132880;Parent=Physo132880;rank=1 scaffold_23 . exon 103264 103733 . - . ID=Physo132880.1;Parent=Physo132880;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 119468 120659 . - . ID=Physo132881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230024;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 119468 120659 . - . ID=Physo132881;Parent=Physo132881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 119468 119694 . - 0 ID=Physo132881;Parent=Physo132881;rank=3 scaffold_23 . exon 119468 119694 . - . ID=Physo132881.3;Parent=Physo132881;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 120194 120208 . - 0 ID=Physo132881;Parent=Physo132881;rank=2 scaffold_23 . CDS 120383 120659 . - 0 ID=Physo132881;Parent=Physo132881;rank=1 scaffold_23 . repeat_region 120503 120635 . ? . description=trf scaffold_23 . repeat_region 120528 120636 . ? . description=trf scaffold_23 . biological_region 120688 120691 0.999 - . logic_name=eponine scaffold_23 . biological_region 120912 120915 0.999 + . logic_name=eponine scaffold_23 . repeat_region 121736 121797 . ? . description=trf scaffold_23 . biological_region 121749 121756 0.999 + . logic_name=eponine scaffold_23 . biological_region 121757 121758 0.999 - . logic_name=eponine scaffold_23 . biological_region 121795 121797 0.999 + . logic_name=eponine scaffold_23 . biological_region 121848 121849 0.999 - . logic_name=eponine scaffold_23 . biological_region 121877 121881 0.999 - . logic_name=eponine scaffold_23 . biological_region 121883 121886 0.999 + . logic_name=eponine scaffold_23 . biological_region 121900 121905 0.999 + . logic_name=eponine scaffold_23 . repeat_region 121912 121991 . ? . description=trf scaffold_23 . biological_region 121967 121973 0.999 - . logic_name=eponine scaffold_23 . repeat_region 123389 123443 . ? . description=trf scaffold_23 . biological_region 123427 123431 0.999 - . logic_name=eponine scaffold_23 . biological_region 123640 123642 0.999 - . logic_name=eponine scaffold_23 . biological_region 123894 123895 0.999 - . logic_name=eponine scaffold_23 . biological_region 124303 124310 0.999 + . logic_name=eponine scaffold_23 . biological_region 124337 124342 0.999 + . logic_name=eponine scaffold_23 . biological_region 124379 124389 0.999 + . logic_name=eponine scaffold_23 . biological_region 124430 124435 0.999 - . logic_name=eponine scaffold_23 . biological_region 124477 124480 0.999 - . logic_name=eponine scaffold_23 . biological_region 124996 125002 0.999 - . logic_name=eponine scaffold_23 . biological_region 125617 125621 0.999 + . logic_name=eponine scaffold_23 . repeat_region 126041 126096 . ? . description=trf scaffold_23 . biological_region 126050 126054 0.999 + . logic_name=eponine scaffold_23 . biological_region 126309 126313 0.999 + . logic_name=eponine scaffold_23 . biological_region 126411 126413 0.999 - . logic_name=eponine scaffold_23 . biological_region 126422 126426 0.999 + . logic_name=eponine scaffold_23 . biological_region 129353 129357 0.999 + . logic_name=eponine scaffold_23 . biological_region 129868 129871 0.999 + . logic_name=eponine scaffold_23 . biological_region 129915 129919 0.999 + . logic_name=eponine scaffold_23 . exon 120194 120208 . - . ID=Physo132881.2;Parent=Physo132881;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . exon 120383 120659 . - . ID=Physo132881.1;Parent=Physo132881;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 122654 124585 . + . ID=Physo132882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230025;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 122654 124585 . + . ID=Physo132882;Parent=Physo132882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 122654 124585 . + 0 ID=Physo132882;Parent=Physo132882;rank=1 scaffold_23 . exon 122654 124585 . + . ID=Physo132882.1;Parent=Physo132882;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 125989 127401 . + . ID=Physo132883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230026;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 125989 127401 . + . ID=Physo132883;Parent=Physo132883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 125989 126752 . + 0 ID=Physo132883;Parent=Physo132883;rank=1 scaffold_23 . exon 125989 126752 . + . ID=Physo132883.1;Parent=Physo132883;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 126861 127401 . + 0 ID=Physo132883;Parent=Physo132883;rank=2 scaffold_23 . exon 126861 127401 . + . ID=Physo132883.2;Parent=Physo132883;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 ensembl protein_coding_gene 129112 132922 . - . ID=Physo132884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230027;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 129112 132922 . - . ID=Physo132884;Parent=Physo132884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 129112 129317 . - 0 ID=Physo132884;Parent=Physo132884;rank=7 scaffold_23 . exon 129112 129317 . - . ID=Physo132884.7;Parent=Physo132884;constitutive=1;ensembl_phase=1;rank=7 scaffold_23 . CDS 129796 129932 . - 0 ID=Physo132884;Parent=Physo132884;rank=6 scaffold_23 . exon 129796 129932 . - . ID=Physo132884.6;Parent=Physo132884;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_23 . CDS 129965 130419 . - 0 ID=Physo132884;Parent=Physo132884;rank=5 scaffold_23 . CDS 130456 130865 . - 0 ID=Physo132884;Parent=Physo132884;rank=4 scaffold_23 . CDS 130898 131407 . - 0 ID=Physo132884;Parent=Physo132884;rank=3 scaffold_23 . CDS 131446 132700 . - 0 ID=Physo132884;Parent=Physo132884;rank=2 scaffold_23 . CDS 132833 132922 . - 0 ID=Physo132884;Parent=Physo132884;rank=1 scaffold_23 . exon 129965 130419 . - . ID=Physo132884.5;Parent=Physo132884;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_23 . exon 130456 130865 . - . ID=Physo132884.4;Parent=Physo132884;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . exon 130898 131407 . - . ID=Physo132884.3;Parent=Physo132884;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . exon 131446 132700 . - . ID=Physo132884.2;Parent=Physo132884;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . exon 132833 132922 . - . ID=Physo132884.1;Parent=Physo132884;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 135169 138482 . + . ID=Physo132885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230028;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 135169 138482 . + . ID=Physo132885;Parent=Physo132885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 135169 135431 . + 0 ID=Physo132885;Parent=Physo132885;rank=1 scaffold_23 . exon 135169 135431 . + . ID=Physo132885.1;Parent=Physo132885;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 136055 136182 . + 0 ID=Physo132885;Parent=Physo132885;rank=2 scaffold_23 . exon 136055 136182 . + . ID=Physo132885.2;Parent=Physo132885;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 136365 137220 . + 0 ID=Physo132885;Parent=Physo132885;rank=3 scaffold_23 . exon 136365 137220 . + . ID=Physo132885.3;Parent=Physo132885;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_23 . CDS 137453 138096 . + 0 ID=Physo132885;Parent=Physo132885;rank=4 scaffold_23 . exon 137453 138096 . + . ID=Physo132885.4;Parent=Physo132885;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 138176 138324 . + 0 ID=Physo132885;Parent=Physo132885;rank=5 scaffold_23 . exon 138176 138324 . + . ID=Physo132885.5;Parent=Physo132885;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 . CDS 138468 138482 . + 0 ID=Physo132885;Parent=Physo132885;rank=6 scaffold_23 . exon 138468 138482 . + . ID=Physo132885.6;Parent=Physo132885;constitutive=1;rank=6 scaffold_23 ensembl protein_coding_gene 139665 140380 . + . ID=Physo132886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230029;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 139665 140380 . + . ID=Physo132886;Parent=Physo132886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 139665 139852 . + 0 ID=Physo132886;Parent=Physo132886;rank=1 scaffold_23 . exon 139665 139852 . + . ID=Physo132886.1;Parent=Physo132886;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 140065 140380 . + 0 ID=Physo132886;Parent=Physo132886;rank=2 scaffold_23 . biological_region 140449 140450 0.999 + . logic_name=eponine scaffold_23 . repeat_region 140936 141183 . - . description=GypsyPi-1c_I-int scaffold_23 . repeat_region 141217 143151 . - . description=GypsyPi-1c_I-int scaffold_23 . biological_region 143682 143685 0.999 + . logic_name=eponine scaffold_23 . biological_region 143818 143820 0.999 - . logic_name=eponine scaffold_23 . biological_region 144177 144181 0.999 - . logic_name=eponine scaffold_23 . exon 140065 140380 . + . ID=Physo132886.2;Parent=Physo132886;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 ensembl protein_coding_gene 141087 145562 . - . ID=Physo132887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230030;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 141087 145562 . - . ID=Physo132887;Parent=Physo132887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 141087 143435 . - 0 ID=Physo132887;Parent=Physo132887;rank=5 scaffold_23 . exon 141087 143435 . - . ID=Physo132887.5;Parent=Physo132887;constitutive=1;rank=5 scaffold_23 . CDS 143620 143840 . - 0 ID=Physo132887;Parent=Physo132887;rank=4 scaffold_23 . exon 143620 143840 . - . ID=Physo132887.4;Parent=Physo132887;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 143908 144480 . - 0 ID=Physo132887;Parent=Physo132887;rank=3 scaffold_23 . exon 143908 144480 . - . ID=Physo132887.3;Parent=Physo132887;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 145071 145296 . - 0 ID=Physo132887;Parent=Physo132887;rank=2 scaffold_23 . exon 145071 145296 . - . ID=Physo132887.2;Parent=Physo132887;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 145482 145562 . - 0 ID=Physo132887;Parent=Physo132887;rank=1 scaffold_23 . exon 145482 145562 . - . ID=Physo132887.1;Parent=Physo132887;constitutive=1;rank=1 scaffold_23 . repeat_region 150579 150586 . ? . description=dust scaffold_23 . repeat_region 159098 159105 . ? . description=dust scaffold_23 ensembl protein_coding_gene 157449 158077 . - . ID=Physo132888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230031;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 157449 158077 . - . ID=Physo132888;Parent=Physo132888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 157449 158077 . - . ID=Physo132888.1;Parent=Physo132888;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 157455 158030 . - 0 ID=Physo132888;Parent=Physo132888;rank=1 scaffold_23 . repeat_region 162214 162284 . ? . description=trf scaffold_23 . biological_region 162507 162507 0.999 - . logic_name=eponine scaffold_23 . biological_region 162563 162564 0.999 + . logic_name=eponine scaffold_23 . repeat_region 164289 164363 . ? . description=trf scaffold_23 . repeat_region 164289 164368 . + . description=(TC)n scaffold_23 . repeat_region 164817 164865 . ? . description=trf scaffold_23 . biological_region 165661 165664 0.999 + . logic_name=eponine scaffold_23 . biological_region 165796 165799 0.999 - . logic_name=eponine scaffold_23 . repeat_region 167068 167106 . ? . description=trf scaffold_23 . repeat_region 167728 167769 . ? . description=trf scaffold_23 ensembl protein_coding_gene 162609 163331 . + . ID=Physo132889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230032;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 162609 163331 . + . ID=Physo132889;Parent=Physo132889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 162609 163331 . + 0 ID=Physo132889;Parent=Physo132889;rank=1 scaffold_23 . exon 162609 163331 . + . ID=Physo132889.1;Parent=Physo132889;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 165606 168808 . + . ID=Physo132890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230033;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 165606 168808 . + . ID=Physo132890;Parent=Physo132890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 165606 166014 . + 0 ID=Physo132890;Parent=Physo132890;rank=1 scaffold_23 . exon 165606 166014 . + . ID=Physo132890.1;Parent=Physo132890;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 166158 166271 . + 0 ID=Physo132890;Parent=Physo132890;rank=2 scaffold_23 . exon 166158 166271 . + . ID=Physo132890.2;Parent=Physo132890;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 166406 166737 . + 0 ID=Physo132890;Parent=Physo132890;rank=3 scaffold_23 . exon 166406 166737 . + . ID=Physo132890.3;Parent=Physo132890;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 166786 167778 . + 0 ID=Physo132890;Parent=Physo132890;rank=4 scaffold_23 . exon 166786 167778 . + . ID=Physo132890.4;Parent=Physo132890;constitutive=1;rank=4 scaffold_23 . CDS 168229 168692 . + 0 ID=Physo132890;Parent=Physo132890;rank=5 scaffold_23 . exon 168229 168692 . + . ID=Physo132890.5;Parent=Physo132890;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_23 . CDS 168760 168808 . + 0 ID=Physo132890;Parent=Physo132890;rank=6 scaffold_23 . exon 168760 168808 . + . ID=Physo132890.6;Parent=Physo132890;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 ensembl protein_coding_gene 169258 179020 . - . ID=Physo132891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230034;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 169258 179020 . - . ID=Physo132891;Parent=Physo132891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 169258 171270 . - 0 ID=Physo132891;Parent=Physo132891;rank=12 scaffold_23 . exon 169258 171270 . - . ID=Physo132891.12;Parent=Physo132891;constitutive=1;rank=12 scaffold_23 . CDS 171409 171925 . - 0 ID=Physo132891;Parent=Physo132891;rank=11 scaffold_23 . CDS 171959 172811 . - 0 ID=Physo132891;Parent=Physo132891;rank=10 scaffold_23 . CDS 172861 172891 . - 0 ID=Physo132891;Parent=Physo132891;rank=9 scaffold_23 . CDS 172911 173051 . - 0 ID=Physo132891;Parent=Physo132891;rank=8 scaffold_23 . CDS 173138 174111 . - 0 ID=Physo132891;Parent=Physo132891;rank=7 scaffold_23 . CDS 174306 174519 . - 0 ID=Physo132891;Parent=Physo132891;rank=6 scaffold_23 . CDS 174886 175616 . - 0 ID=Physo132891;Parent=Physo132891;rank=5 scaffold_23 . CDS 175874 176270 . - 0 ID=Physo132891;Parent=Physo132891;rank=4 scaffold_23 . CDS 176509 176610 . - 0 ID=Physo132891;Parent=Physo132891;rank=3 scaffold_23 . CDS 176720 177639 . - 0 ID=Physo132891;Parent=Physo132891;rank=2 scaffold_23 . CDS 178126 179020 . - 0 ID=Physo132891;Parent=Physo132891;rank=1 scaffold_23 . exon 171409 171925 . - . ID=Physo132891.11;Parent=Physo132891;constitutive=1;ensembl_phase=2;rank=11 scaffold_23 . exon 171959 172811 . - . ID=Physo132891.10;Parent=Physo132891;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_23 . exon 172861 172891 . - . ID=Physo132891.9;Parent=Physo132891;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_23 . exon 172911 173051 . - . ID=Physo132891.8;Parent=Physo132891;constitutive=1;rank=8 scaffold_23 . exon 173138 174111 . - . ID=Physo132891.7;Parent=Physo132891;constitutive=1;ensembl_phase=1;rank=7 scaffold_23 . exon 174306 174519 . - . ID=Physo132891.6;Parent=Physo132891;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_23 . exon 174886 175616 . - . ID=Physo132891.5;Parent=Physo132891;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 . exon 175874 176270 . - . ID=Physo132891.4;Parent=Physo132891;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_23 . exon 176509 176610 . - . ID=Physo132891.3;Parent=Physo132891;constitutive=1;rank=3 scaffold_23 . exon 176720 177639 . - . ID=Physo132891.2;Parent=Physo132891;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . exon 178126 179020 . - . ID=Physo132891.1;Parent=Physo132891;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . repeat_region 180074 180150 . ? . description=dust scaffold_23 . repeat_region 180074 180150 . ? . description=trf scaffold_23 . repeat_region 180074 180155 . + . description=(TC)n scaffold_23 . repeat_region 180604 180652 . ? . description=trf scaffold_23 . biological_region 188547 188549 0.999 + . logic_name=eponine scaffold_23 . biological_region 188593 188595 0.999 + . logic_name=eponine scaffold_23 . biological_region 188635 188636 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 181816 182289 . + . ID=Physo132892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230035;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 181816 182289 . + . ID=Physo132892;Parent=Physo132892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 181816 182289 . + 0 ID=Physo132892;Parent=Physo132892;rank=1 scaffold_23 . exon 181816 182289 . + . ID=Physo132892.1;Parent=Physo132892;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 185044 191882 . - . ID=Physo132893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230036;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 185044 191882 . - . ID=Physo132893;Parent=Physo132893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 185044 185049 . - 0 ID=Physo132893;Parent=Physo132893;rank=12 scaffold_23 . exon 185044 185049 . - . ID=Physo132893.12;Parent=Physo132893;constitutive=1;rank=12 scaffold_23 . CDS 185159 185968 . - 0 ID=Physo132893;Parent=Physo132893;rank=11 scaffold_23 . exon 185159 185968 . - . ID=Physo132893.11;Parent=Physo132893;constitutive=1;rank=11 scaffold_23 . CDS 185996 186329 . - 0 ID=Physo132893;Parent=Physo132893;rank=10 scaffold_23 . exon 185996 186329 . - . ID=Physo132893.10;Parent=Physo132893;constitutive=1;ensembl_phase=2;rank=10 scaffold_23 . CDS 186392 187302 . - 0 ID=Physo132893;Parent=Physo132893;rank=9 scaffold_23 . exon 186392 187302 . - . ID=Physo132893.9;Parent=Physo132893;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_23 . CDS 187324 187434 . - 0 ID=Physo132893;Parent=Physo132893;rank=8 scaffold_23 . exon 187324 187434 . - . ID=Physo132893.8;Parent=Physo132893;constitutive=1;rank=8 scaffold_23 . CDS 187754 188281 . - 0 ID=Physo132893;Parent=Physo132893;rank=7 scaffold_23 . exon 187754 188281 . - . ID=Physo132893.7;Parent=Physo132893;constitutive=1;rank=7 scaffold_23 . CDS 188434 189366 . - 0 ID=Physo132893;Parent=Physo132893;rank=6 scaffold_23 . exon 188434 189366 . - . ID=Physo132893.6;Parent=Physo132893;constitutive=1;rank=6 scaffold_23 . CDS 189438 189536 . - 0 ID=Physo132893;Parent=Physo132893;rank=5 scaffold_23 . exon 189438 189536 . - . ID=Physo132893.5;Parent=Physo132893;constitutive=1;rank=5 scaffold_23 . CDS 189565 189828 . - 0 ID=Physo132893;Parent=Physo132893;rank=4 scaffold_23 . exon 189565 189828 . - . ID=Physo132893.4;Parent=Physo132893;constitutive=1;rank=4 scaffold_23 . CDS 189877 190494 . - 0 ID=Physo132893;Parent=Physo132893;rank=3 scaffold_23 . exon 189877 190494 . - . ID=Physo132893.3;Parent=Physo132893;constitutive=1;rank=3 scaffold_23 . CDS 190732 191607 . - 0 ID=Physo132893;Parent=Physo132893;rank=2 scaffold_23 . CDS 191643 191882 . - 0 ID=Physo132893;Parent=Physo132893;rank=1 scaffold_23 . exon 190732 191607 . - . ID=Physo132893.2;Parent=Physo132893;constitutive=1;rank=2 scaffold_23 . exon 191643 191882 . - . ID=Physo132893.1;Parent=Physo132893;constitutive=1;rank=1 scaffold_23 . repeat_region 201869 201899 . ? . description=trf scaffold_23 . repeat_region 203623 203632 . ? . description=dust scaffold_23 . biological_region 204278 204283 0.999 - . logic_name=eponine scaffold_23 . repeat_region 204303 204310 . ? . description=dust scaffold_23 . biological_region 205701 205705 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 215831 217042 . - . ID=Physo132894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230037;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 215831 217042 . - . ID=Physo132894;Parent=Physo132894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 215831 216525 . - 0 ID=Physo132894;Parent=Physo132894;rank=2 scaffold_23 . exon 215831 216525 . - . ID=Physo132894.2;Parent=Physo132894;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 216589 217042 . - 0 ID=Physo132894;Parent=Physo132894;rank=1 scaffold_23 . exon 216589 217042 . - . ID=Physo132894.1;Parent=Physo132894;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 218039 218871 . + . ID=Physo132895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230038;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 218039 218871 . + . ID=Physo132895;Parent=Physo132895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 218039 218409 . + 0 ID=Physo132895;Parent=Physo132895;rank=1 scaffold_23 . exon 218039 218409 . + . ID=Physo132895.1;Parent=Physo132895;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 218676 218871 . + 0 ID=Physo132895;Parent=Physo132895;rank=2 scaffold_23 . exon 218676 218871 . + . ID=Physo132895.2;Parent=Physo132895;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . biological_region 227266 227271 0.999 + . logic_name=eponine scaffold_23 . biological_region 228370 228370 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 227273 228424 . + . ID=Physo156604;biotype=protein_coding;external_name=C_scaffold_23000005;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 227273 228424 . + . ID=Physo156604;Parent=Physo156604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 227273 227413 . + . ID=Physo156604.1;Parent=Physo156604;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 227275 227413 . + 0 ID=Physo156604;Parent=Physo156604;rank=1 scaffold_23 . CDS 227549 227720 . + 0 ID=Physo156604;Parent=Physo156604;rank=2 scaffold_23 . exon 227549 227720 . + . ID=Physo156604.2;Parent=Physo156604;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_23 . CDS 227760 228186 . + 0 ID=Physo156604;Parent=Physo156604;rank=3 scaffold_23 . exon 227760 228186 . + . ID=Physo156604.3;Parent=Physo156604;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 228332 228424 . + 0 ID=Physo156604;Parent=Physo156604;rank=4 scaffold_23 . exon 228332 228424 . + . ID=Physo156604.4;Parent=Physo156604;constitutive=1;rank=4 scaffold_23 ensembl protein_coding_gene 228485 235858 . - . ID=Physo156605;biotype=protein_coding;external_name=C_scaffold_23000006;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 228485 235858 . - . ID=Physo156605;Parent=Physo156605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 228485 228942 . - 0 ID=Physo156605;Parent=Physo156605;rank=19 scaffold_23 . exon 228485 228942 . - . ID=Physo156605.19;Parent=Physo156605;constitutive=1;ensembl_phase=1;rank=19 scaffold_23 . CDS 229105 229792 . - 0 ID=Physo156605;Parent=Physo156605;rank=18 scaffold_23 . exon 229105 229792 . - . ID=Physo156605.18;Parent=Physo156605;constitutive=1;ensembl_end_phase=1;rank=18 scaffold_23 . CDS 229820 229885 . - 0 ID=Physo156605;Parent=Physo156605;rank=17 scaffold_23 . exon 229820 229885 . - . ID=Physo156605.17;Parent=Physo156605;constitutive=1;rank=17 scaffold_23 . CDS 230021 230729 . - 0 ID=Physo156605;Parent=Physo156605;rank=16 scaffold_23 . CDS 230775 230869 . - 0 ID=Physo156605;Parent=Physo156605;rank=15 scaffold_23 . CDS 231032 231196 . - 0 ID=Physo156605;Parent=Physo156605;rank=14 scaffold_23 . CDS 231266 231354 . - 0 ID=Physo156605;Parent=Physo156605;rank=13 scaffold_23 . CDS 231400 231732 . - 0 ID=Physo156605;Parent=Physo156605;rank=12 scaffold_23 . CDS 231829 232080 . - 0 ID=Physo156605;Parent=Physo156605;rank=11 scaffold_23 . CDS 232114 232540 . - 0 ID=Physo156605;Parent=Physo156605;rank=10 scaffold_23 . CDS 232799 233143 . - 0 ID=Physo156605;Parent=Physo156605;rank=9 scaffold_23 . CDS 233209 233292 . - 0 ID=Physo156605;Parent=Physo156605;rank=8 scaffold_23 . CDS 233361 233519 . - 0 ID=Physo156605;Parent=Physo156605;rank=7 scaffold_23 . CDS 233597 233716 . - 0 ID=Physo156605;Parent=Physo156605;rank=6 scaffold_23 . CDS 233765 234234 . - 0 ID=Physo156605;Parent=Physo156605;rank=5 scaffold_23 . CDS 234314 234411 . - 0 ID=Physo156605;Parent=Physo156605;rank=4 scaffold_23 . CDS 234634 235489 . - 0 ID=Physo156605;Parent=Physo156605;rank=3 scaffold_23 . CDS 235545 235582 . - 0 ID=Physo156605;Parent=Physo156605;rank=2 scaffold_23 . CDS 235719 235858 . - 0 ID=Physo156605;Parent=Physo156605;rank=1 scaffold_23 . repeat_region 230637 230705 . ? . description=dust scaffold_23 ensembl protein_coding_gene 239772 241082 . + . ID=Physo132898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230041;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 239772 241082 . + . ID=Physo132898;Parent=Physo132898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 239772 241082 . + 0 ID=Physo132898;Parent=Physo132898;rank=1 scaffold_23 . exon 239772 241082 . + . ID=Physo132898.1;Parent=Physo132898;constitutive=1;rank=1 scaffold_23 . exon 230021 230729 . - . ID=Physo156605.16;Parent=Physo156605;constitutive=1;ensembl_phase=2;rank=16 scaffold_23 . exon 230775 230869 . - . ID=Physo156605.15;Parent=Physo156605;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_23 . exon 231032 231196 . - . ID=Physo156605.14;Parent=Physo156605;constitutive=1;rank=14 scaffold_23 . exon 231266 231354 . - . ID=Physo156605.13;Parent=Physo156605;constitutive=1;ensembl_phase=1;rank=13 scaffold_23 . exon 231400 231732 . - . ID=Physo156605.12;Parent=Physo156605;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_23 . exon 231829 232080 . - . ID=Physo156605.11;Parent=Physo156605;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_23 . exon 232114 232540 . - . ID=Physo156605.10;Parent=Physo156605;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_23 . exon 232799 233143 . - . ID=Physo156605.9;Parent=Physo156605;constitutive=1;rank=9 scaffold_23 . exon 233209 233292 . - . ID=Physo156605.8;Parent=Physo156605;constitutive=1;rank=8 scaffold_23 . exon 233361 233519 . - . ID=Physo156605.7;Parent=Physo156605;constitutive=1;rank=7 scaffold_23 . exon 233597 233716 . - . ID=Physo156605.6;Parent=Physo156605;constitutive=1;rank=6 scaffold_23 . exon 233765 234234 . - . ID=Physo156605.5;Parent=Physo156605;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 . exon 234314 234411 . - . ID=Physo156605.4;Parent=Physo156605;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_23 . exon 234634 235489 . - . ID=Physo156605.3;Parent=Physo156605;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_23 . exon 235545 235582 . - . ID=Physo156605.2;Parent=Physo156605;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . exon 235719 235858 . - . ID=Physo156605.1;Parent=Physo156605;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . repeat_region 241697 241720 . ? . description=trf scaffold_23 . repeat_region 241718 241792 . ? . description=trf scaffold_23 . biological_region 243332 243333 0.999 + . logic_name=eponine scaffold_23 . biological_region 247981 247983 0.999 + . logic_name=eponine scaffold_23 . biological_region 248528 248533 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 242632 243469 . - . ID=Physo132899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230042;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 242632 243469 . - . ID=Physo132899;Parent=Physo132899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 242632 243196 . - 0 ID=Physo132899;Parent=Physo132899;rank=2 scaffold_23 . exon 242632 243196 . - . ID=Physo132899.2;Parent=Physo132899;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 243309 243469 . - 0 ID=Physo132899;Parent=Physo132899;rank=1 scaffold_23 . exon 243309 243469 . - . ID=Physo132899.1;Parent=Physo132899;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 243691 245424 . + . ID=Physo132900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230043;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 243691 245424 . + . ID=Physo132900;Parent=Physo132900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 243691 245424 . + 0 ID=Physo132900;Parent=Physo132900;rank=1 scaffold_23 . exon 243691 245424 . + . ID=Physo132900.1;Parent=Physo132900;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 247924 248774 . - . ID=Physo132901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230044;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 247924 248774 . - . ID=Physo132901;Parent=Physo132901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 247924 248453 . - . ID=Physo132901.2;Parent=Physo132901;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_23 . CDS 248035 248424 . - 0 ID=Physo132901;Parent=Physo132901;rank=1 scaffold_23 . exon 248770 248774 . - . ID=Physo132901.1;Parent=Physo132901;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . repeat_region 262287 262300 . ? . description=dust scaffold_23 ensembl protein_coding_gene 262360 263124 . - . ID=Physo108654;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230004;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 262360 263124 . - . ID=Physo108654;Parent=Physo108654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 262360 263124 . - 0 ID=Physo108654;Parent=Physo108654;rank=1 scaffold_23 . exon 262360 263124 . - . ID=Physo108654.1;Parent=Physo108654;constitutive=1;rank=1 scaffold_23 . repeat_region 270805 270826 . ? . description=trf scaffold_23 . repeat_region 270824 270853 . ? . description=trf scaffold_23 . biological_region 271452 271453 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 274314 275279 . - . ID=Physo132903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230046;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 274314 275279 . - . ID=Physo132903;Parent=Physo132903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 274314 274549 . - 0 ID=Physo132903;Parent=Physo132903;rank=4 scaffold_23 . exon 274314 274549 . - . ID=Physo132903.4;Parent=Physo132903;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 274630 274858 . - 0 ID=Physo132903;Parent=Physo132903;rank=3 scaffold_23 . exon 274630 274858 . - . ID=Physo132903.3;Parent=Physo132903;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . CDS 274880 275119 . - 0 ID=Physo132903;Parent=Physo132903;rank=2 scaffold_23 . exon 274880 275119 . - . ID=Physo132903.2;Parent=Physo132903;constitutive=1;rank=2 scaffold_23 . CDS 275196 275279 . - 0 ID=Physo132903;Parent=Physo132903;rank=1 scaffold_23 . exon 275196 275279 . - . ID=Physo132903.1;Parent=Physo132903;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 276744 278254 . + . ID=Physo132904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230047;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 276744 278254 . + . ID=Physo132904;Parent=Physo132904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 276744 276751 . + 0 ID=Physo132904;Parent=Physo132904;rank=1 scaffold_23 . exon 276744 276751 . + . ID=Physo132904.1;Parent=Physo132904;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 277187 277400 . + 0 ID=Physo132904;Parent=Physo132904;rank=2 scaffold_23 . exon 277187 277400 . + . ID=Physo132904.2;Parent=Physo132904;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 277464 277665 . + 0 ID=Physo132904;Parent=Physo132904;rank=3 scaffold_23 . exon 277464 277665 . + . ID=Physo132904.3;Parent=Physo132904;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . CDS 277708 277953 . + 0 ID=Physo132904;Parent=Physo132904;rank=4 scaffold_23 . exon 277708 277953 . + . ID=Physo132904.4;Parent=Physo132904;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 278024 278146 . + 0 ID=Physo132904;Parent=Physo132904;rank=5 scaffold_23 . exon 278024 278146 . + . ID=Physo132904.5;Parent=Physo132904;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_23 . CDS 278211 278254 . + 0 ID=Physo132904;Parent=Physo132904;rank=6 scaffold_23 . exon 278211 278254 . + . ID=Physo132904.6;Parent=Physo132904;constitutive=1;ensembl_phase=1;rank=6 scaffold_23 ensembl protein_coding_gene 287471 288111 . - . ID=Physo132905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230048;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 287471 288111 . - . ID=Physo132905;Parent=Physo132905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 287471 287945 . - 0 ID=Physo132905;Parent=Physo132905;rank=2 scaffold_23 . exon 287471 287945 . - . ID=Physo132905.2;Parent=Physo132905;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 288011 288111 . - 0 ID=Physo132905;Parent=Physo132905;rank=1 scaffold_23 . exon 288011 288111 . - . ID=Physo132905.1;Parent=Physo132905;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . repeat_region 291772 291802 . ? . description=trf scaffold_23 . repeat_region 292516 292523 . ? . description=dust scaffold_23 . repeat_region 292809 292816 . ? . description=dust scaffold_23 . biological_region 292849 292849 0.999 + . logic_name=eponine scaffold_23 . biological_region 296300 296301 0.999 - . logic_name=eponine scaffold_23 . repeat_region 298981 298988 . ? . description=dust scaffold_23 ensembl protein_coding_gene 293115 294752 . + . ID=Physo132906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230049;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 293115 294752 . + . ID=Physo132906;Parent=Physo132906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 293115 294647 . + 0 ID=Physo132906;Parent=Physo132906;rank=1 scaffold_23 . exon 293115 294752 . + . ID=Physo132906.1;Parent=Physo132906;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 296511 298946 . - . ID=Physo132908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230051;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 296511 298946 . - . ID=Physo132908;Parent=Physo132908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 296511 298946 . - 0 ID=Physo132908;Parent=Physo132908;rank=1 scaffold_23 . exon 296511 298946 . - . ID=Physo132908.1;Parent=Physo132908;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 295122 296366 . + . ID=Physo156606;biotype=protein_coding;external_name=C_scaffold_23000007;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 295122 296366 . + . ID=Physo156606;Parent=Physo156606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 295122 295135 . + 0 ID=Physo156606;Parent=Physo156606;rank=1 scaffold_23 . exon 295122 295135 . + . ID=Physo156606.1;Parent=Physo156606;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 295281 295926 . + 0 ID=Physo156606;Parent=Physo156606;rank=2 scaffold_23 . exon 295281 295926 . + . ID=Physo156606.2;Parent=Physo156606;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 295953 296366 . + 0 ID=Physo156606;Parent=Physo156606;rank=3 scaffold_23 . exon 295953 296366 . + . ID=Physo156606.3;Parent=Physo156606;constitutive=1;rank=3 scaffold_23 ensembl protein_coding_gene 301212 302051 . - . ID=Physo132909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230052;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 301212 302051 . - . ID=Physo132909;Parent=Physo132909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 301212 302027 . - 0 ID=Physo132909;Parent=Physo132909;rank=1 scaffold_23 . exon 301212 302051 . - . ID=Physo132909.1;Parent=Physo132909;constitutive=1;ensembl_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 305658 306566 . + . ID=Physo132910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230053;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 305658 306566 . + . ID=Physo132910;Parent=Physo132910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 305658 306566 . + 0 ID=Physo132910;Parent=Physo132910;rank=1 scaffold_23 . exon 305658 306566 . + . ID=Physo132910.1;Parent=Physo132910;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 314130 315170 . + . ID=Physo132911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230054;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 314130 315170 . + . ID=Physo132911;Parent=Physo132911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 314130 314137 . + . ID=Physo132911.1;Parent=Physo132911;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . exon 314351 315170 . + . ID=Physo132911.2;Parent=Physo132911;constitutive=1;ensembl_phase=-1;rank=2 scaffold_23 . CDS 314427 315170 . + 0 ID=Physo132911;Parent=Physo132911;rank=1 scaffold_23 ensembl protein_coding_gene 319590 321981 . - . ID=Physo132912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230055;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 319590 321981 . - . ID=Physo132912;Parent=Physo132912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 319590 319717 . - 0 ID=Physo132912;Parent=Physo132912;rank=4 scaffold_23 . exon 319590 319717 . - . ID=Physo132912.4;Parent=Physo132912;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 319810 319829 . - 0 ID=Physo132912;Parent=Physo132912;rank=3 scaffold_23 . exon 319810 319829 . - . ID=Physo132912.3;Parent=Physo132912;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 320006 320155 . - 0 ID=Physo132912;Parent=Physo132912;rank=2 scaffold_23 . CDS 320618 321981 . - 0 ID=Physo132912;Parent=Physo132912;rank=1 scaffold_23 . biological_region 321541 321541 0.999 - . logic_name=eponine scaffold_23 . repeat_region 322050 322057 . ? . description=dust scaffold_23 . biological_region 322626 322627 0.999 - . logic_name=eponine scaffold_23 . repeat_region 324402 324409 . ? . description=dust scaffold_23 . biological_region 324888 324891 0.999 + . logic_name=eponine scaffold_23 . repeat_region 325551 325560 . ? . description=dust scaffold_23 . repeat_region 325952 325959 . ? . description=dust scaffold_23 . biological_region 326457 326459 0.999 + . logic_name=eponine scaffold_23 . biological_region 326955 326956 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 322560 323219 . + . ID=Physo108655;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230005;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 322560 323219 . + . ID=Physo108655;Parent=Physo108655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 322560 323162 . + 0 ID=Physo108655;Parent=Physo108655;rank=1 scaffold_23 . exon 322560 323219 . + . ID=Physo108655.1;Parent=Physo108655;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_23 . exon 320006 320155 . - . ID=Physo132912.2;Parent=Physo132912;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_23 . exon 320618 321981 . - . ID=Physo132912.1;Parent=Physo132912;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 323626 325175 . + . ID=Physo132914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230057;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 323626 325175 . + . ID=Physo132914;Parent=Physo132914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 323626 323765 . + 0 ID=Physo132914;Parent=Physo132914;rank=1 scaffold_23 . exon 323626 323765 . + . ID=Physo132914.1;Parent=Physo132914;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 323841 324347 . + 0 ID=Physo132914;Parent=Physo132914;rank=2 scaffold_23 . exon 323841 324347 . + . ID=Physo132914.2;Parent=Physo132914;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_23 . CDS 324419 324711 . + 0 ID=Physo132914;Parent=Physo132914;rank=3 scaffold_23 . exon 324419 324711 . + . ID=Physo132914.3;Parent=Physo132914;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 324772 325175 . + 0 ID=Physo132914;Parent=Physo132914;rank=4 scaffold_23 . exon 324772 325175 . + . ID=Physo132914.4;Parent=Physo132914;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 ensembl protein_coding_gene 326082 328658 . + . ID=Physo132915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230058;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 326082 328658 . + . ID=Physo132915;Parent=Physo132915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 326082 326304 . + 0 ID=Physo132915;Parent=Physo132915;rank=1 scaffold_23 . exon 326082 326304 . + . ID=Physo132915.1;Parent=Physo132915;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 326437 327173 . + 0 ID=Physo132915;Parent=Physo132915;rank=2 scaffold_23 . exon 326437 327173 . + . ID=Physo132915.2;Parent=Physo132915;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 327281 327347 . + 0 ID=Physo132915;Parent=Physo132915;rank=3 scaffold_23 . exon 327281 327347 . + . ID=Physo132915.3;Parent=Physo132915;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_23 . CDS 327585 327681 . + 0 ID=Physo132915;Parent=Physo132915;rank=4 scaffold_23 . exon 327585 327681 . + . ID=Physo132915.4;Parent=Physo132915;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_23 . CDS 327726 328107 . + 0 ID=Physo132915;Parent=Physo132915;rank=5 scaffold_23 . exon 327726 328107 . + . ID=Physo132915.5;Parent=Physo132915;constitutive=1;ensembl_phase=2;rank=5 scaffold_23 . CDS 328305 328322 . + 0 ID=Physo132915;Parent=Physo132915;rank=6 scaffold_23 . exon 328305 328658 . + . ID=Physo132915.6;Parent=Physo132915;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_23 ensembl protein_coding_gene 332377 332637 . - . ID=Physo108656;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230006;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 332377 332637 . - . ID=Physo108656;Parent=Physo108656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 332377 332637 . - 0 ID=Physo108656;Parent=Physo108656;rank=1 scaffold_23 . exon 332377 332637 . - . ID=Physo108656.1;Parent=Physo108656;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 333331 334212 . - . ID=Physo108657;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230007;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 333331 334212 . - . ID=Physo108657;Parent=Physo108657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 333331 334212 . - 0 ID=Physo108657;Parent=Physo108657;rank=1 scaffold_23 . exon 333331 334212 . - . ID=Physo108657.1;Parent=Physo108657;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 330820 331659 . - . ID=Physo132916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230059;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 330820 331659 . - . ID=Physo132916;Parent=Physo132916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 330820 331659 . - 0 ID=Physo132916;Parent=Physo132916;rank=1 scaffold_23 . exon 330820 331659 . - . ID=Physo132916.1;Parent=Physo132916;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 334732 335694 . + . ID=Physo132919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230062;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 334732 335694 . + . ID=Physo132919;Parent=Physo132919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 334732 335694 . + 0 ID=Physo132919;Parent=Physo132919;rank=1 scaffold_23 . exon 334732 335694 . + . ID=Physo132919.1;Parent=Physo132919;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 336060 338408 . + . ID=Physo132920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230063;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 336060 338408 . + . ID=Physo132920;Parent=Physo132920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 336060 337017 . + 0 ID=Physo132920;Parent=Physo132920;rank=1 scaffold_23 . exon 336060 337017 . + . ID=Physo132920.1;Parent=Physo132920;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 337122 337246 . + 0 ID=Physo132920;Parent=Physo132920;rank=2 scaffold_23 . exon 337122 337246 . + . ID=Physo132920.2;Parent=Physo132920;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 337323 338408 . + 0 ID=Physo132920;Parent=Physo132920;rank=3 scaffold_23 . exon 337323 338408 . + . ID=Physo132920.3;Parent=Physo132920;constitutive=1;rank=3 scaffold_23 ensembl protein_coding_gene 338473 340852 . - . ID=Physo156609;biotype=protein_coding;external_name=C_scaffold_23000010;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 338473 340852 . - . ID=Physo156609;Parent=Physo156609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 338473 339383 . - 0 ID=Physo156609;Parent=Physo156609;rank=3 scaffold_23 . exon 338473 339383 . - . ID=Physo156609.3;Parent=Physo156609;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 339916 340420 . - 0 ID=Physo156609;Parent=Physo156609;rank=2 scaffold_23 . CDS 340478 340852 . - 0 ID=Physo156609;Parent=Physo156609;rank=1 scaffold_23 . repeat_region 342353 342360 . ? . description=dust scaffold_23 . repeat_region 342389 342402 . ? . description=dust scaffold_23 . repeat_region 342905 342943 . ? . description=trf scaffold_23 ensembl protein_coding_gene 348080 349084 . + . ID=Physo132922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230065;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 348080 349084 . + . ID=Physo132922;Parent=Physo132922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 348080 349084 . + 0 ID=Physo132922;Parent=Physo132922;rank=1 scaffold_23 . exon 348080 349084 . + . ID=Physo132922.1;Parent=Physo132922;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 349688 350793 . + . ID=Physo132923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230066;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 349688 350793 . + . ID=Physo132923;Parent=Physo132923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 349688 350793 . + . ID=Physo132923.1;Parent=Physo132923;constitutive=1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 349705 350793 . + 0 ID=Physo132923;Parent=Physo132923;rank=1 scaffold_23 . exon 339916 340420 . - . ID=Physo156609.2;Parent=Physo156609;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . exon 340478 340852 . - . ID=Physo156609.1;Parent=Physo156609;constitutive=1;rank=1 scaffold_23 . biological_region 356684 356685 0.999 + . logic_name=eponine scaffold_23 . biological_region 356689 356691 0.999 - . logic_name=eponine scaffold_23 . biological_region 357145 357149 0.999 - . logic_name=eponine scaffold_23 . biological_region 357188 357191 0.999 + . logic_name=eponine scaffold_23 . biological_region 357212 357212 0.999 - . logic_name=eponine scaffold_23 . biological_region 357234 357236 0.999 + . logic_name=eponine scaffold_23 . biological_region 357291 357294 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 357595 359059 . + . ID=Physo132926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230069;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 357595 359059 . + . ID=Physo132926;Parent=Physo132926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 357595 357704 . + 0 ID=Physo132926;Parent=Physo132926;rank=1 scaffold_23 . exon 357595 357704 . + . ID=Physo132926.1;Parent=Physo132926;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 357807 358248 . + 0 ID=Physo132926;Parent=Physo132926;rank=2 scaffold_23 . exon 357807 358248 . + . ID=Physo132926.2;Parent=Physo132926;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 358319 358615 . + 0 ID=Physo132926;Parent=Physo132926;rank=3 scaffold_23 . exon 358319 358615 . + . ID=Physo132926.3;Parent=Physo132926;constitutive=1;rank=3 scaffold_23 . CDS 358748 358867 . + 0 ID=Physo132926;Parent=Physo132926;rank=4 scaffold_23 . exon 358748 358867 . + . ID=Physo132926.4;Parent=Physo132926;constitutive=1;rank=4 scaffold_23 . CDS 358954 359013 . + 0 ID=Physo132926;Parent=Physo132926;rank=5 scaffold_23 . exon 358954 359013 . + . ID=Physo132926.5;Parent=Physo132926;constitutive=1;rank=5 scaffold_23 . CDS 359054 359059 . + 0 ID=Physo132926;Parent=Physo132926;rank=6 scaffold_23 . exon 359054 359059 . + . ID=Physo132926.6;Parent=Physo132926;constitutive=1;rank=6 scaffold_23 ensembl protein_coding_gene 351046 357305 . - . ID=Physo156611;biotype=protein_coding;external_name=C_scaffold_23000012;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 351046 357305 . - . ID=Physo156611;Parent=Physo156611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 351046 351106 . - 0 ID=Physo156611;Parent=Physo156611;rank=11 scaffold_23 . exon 351046 351106 . - . ID=Physo156611.11;Parent=Physo156611;constitutive=1;ensembl_phase=2;rank=11 scaffold_23 . CDS 351331 352390 . - 0 ID=Physo156611;Parent=Physo156611;rank=10 scaffold_23 . exon 351331 352390 . - . ID=Physo156611.10;Parent=Physo156611;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_23 . CDS 352442 353363 . - 0 ID=Physo156611;Parent=Physo156611;rank=9 scaffold_23 . exon 352442 353363 . - . ID=Physo156611.9;Parent=Physo156611;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_23 . CDS 353421 353493 . - 0 ID=Physo156611;Parent=Physo156611;rank=8 scaffold_23 . exon 353421 353493 . - . ID=Physo156611.8;Parent=Physo156611;constitutive=1;ensembl_phase=2;rank=8 scaffold_23 . CDS 353662 353781 . - 0 ID=Physo156611;Parent=Physo156611;rank=7 scaffold_23 . exon 353662 353781 . - . ID=Physo156611.7;Parent=Physo156611;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_23 . CDS 353935 354762 . - 0 ID=Physo156611;Parent=Physo156611;rank=6 scaffold_23 . exon 353935 354762 . - . ID=Physo156611.6;Parent=Physo156611;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_23 . CDS 355036 355219 . - 0 ID=Physo156611;Parent=Physo156611;rank=5 scaffold_23 . exon 355036 355219 . - . ID=Physo156611.5;Parent=Physo156611;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_23 . CDS 355259 355411 . - 0 ID=Physo156611;Parent=Physo156611;rank=4 scaffold_23 . exon 355259 355411 . - . ID=Physo156611.4;Parent=Physo156611;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 355436 356221 . - 0 ID=Physo156611;Parent=Physo156611;rank=3 scaffold_23 . exon 355436 356221 . - . ID=Physo156611.3;Parent=Physo156611;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 356279 357029 . - 0 ID=Physo156611;Parent=Physo156611;rank=2 scaffold_23 . exon 356279 357029 . - . ID=Physo156611.2;Parent=Physo156611;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 357060 357305 . - 0 ID=Physo156611;Parent=Physo156611;rank=1 scaffold_23 . exon 357060 357305 . - . ID=Physo156611.1;Parent=Physo156611;constitutive=1;rank=1 scaffold_23 . repeat_region 360667 360674 . ? . description=dust scaffold_23 . repeat_region 369189 369196 . ? . description=dust scaffold_23 ensembl protein_coding_gene 362058 362930 . - . ID=Physo108658;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230008;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 362058 362930 . - . ID=Physo108658;Parent=Physo108658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 362058 362930 . - . ID=Physo108658.1;Parent=Physo108658;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 362253 362888 . - 0 ID=Physo108658;Parent=Physo108658;rank=1 scaffold_23 ensembl protein_coding_gene 361339 361920 . - . ID=Physo132927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230070;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 361339 361920 . - . ID=Physo132927;Parent=Physo132927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 361339 361920 . - 0 ID=Physo132927;Parent=Physo132927;rank=1 scaffold_23 . exon 361339 361920 . - . ID=Physo132927.1;Parent=Physo132927;constitutive=1;rank=1 scaffold_23 . biological_region 373668 373674 0.999 + . logic_name=eponine scaffold_23 . repeat_region 373714 373796 . ? . description=trf scaffold_23 . repeat_region 373763 373826 . ? . description=trf scaffold_23 . repeat_region 376673 378395 . + . description=Polinton-1_PI scaffold_23 . repeat_region 378395 380309 . - . description=Polinton-1_PI scaffold_23 . repeat_region 380313 380980 . ? . description=dust scaffold_23 . repeat_region 381777 381942 . ? . description=dust scaffold_23 . repeat_region 382281 382297 . ? . description=dust scaffold_23 . repeat_region 385008 385263 . ? . description=dust scaffold_23 . repeat_region 386749 387452 . ? . description=dust scaffold_23 . repeat_region 388752 388760 . ? . description=dust scaffold_23 . biological_region 394687 394688 0.999 + . logic_name=eponine scaffold_23 . biological_region 394895 394898 0.999 - . logic_name=eponine scaffold_23 . biological_region 396084 396087 0.999 + . logic_name=eponine scaffold_23 . biological_region 396780 396781 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 391132 391809 . - . ID=Physo132929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230072;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 391132 391809 . - . ID=Physo132929;Parent=Physo132929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 391132 391809 . - 0 ID=Physo132929;Parent=Physo132929;rank=1 scaffold_23 . exon 391132 391809 . - . ID=Physo132929.1;Parent=Physo132929;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 393782 395017 . - . ID=Physo132930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230073;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 393782 395017 . - . ID=Physo132930;Parent=Physo132930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 393782 395017 . - 0 ID=Physo132930;Parent=Physo132930;rank=1 scaffold_23 . exon 393782 395017 . - . ID=Physo132930.1;Parent=Physo132930;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 396050 397561 . - . ID=Physo132931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230074;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 396050 397561 . - . ID=Physo132931;Parent=Physo132931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 396050 396262 . - 0 ID=Physo132931;Parent=Physo132931;rank=3 scaffold_23 . exon 396050 396262 . - . ID=Physo132931.3;Parent=Physo132931;constitutive=1;rank=3 scaffold_23 . CDS 396359 396455 . - 0 ID=Physo132931;Parent=Physo132931;rank=2 scaffold_23 . exon 396359 396455 . - . ID=Physo132931.2;Parent=Physo132931;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 396528 397561 . - 0 ID=Physo132931;Parent=Physo132931;rank=1 scaffold_23 . exon 396528 397561 . - . ID=Physo132931.1;Parent=Physo132931;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . repeat_region 403888 403895 . ? . description=dust scaffold_23 . repeat_region 404107 404130 . ? . description=dust scaffold_23 . repeat_region 405191 405232 . ? . description=trf scaffold_23 ensembl protein_coding_gene 404591 405054 . - . ID=Physo132932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230075;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 404591 405054 . - . ID=Physo132932;Parent=Physo132932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 404591 404756 . - . ID=Physo132932.3;Parent=Physo132932;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_23 . CDS 404651 404756 . - 0 ID=Physo132932;Parent=Physo132932;rank=2 scaffold_23 . CDS 404785 404828 . - 0 ID=Physo132932;Parent=Physo132932;rank=1 scaffold_23 . exon 404785 404842 . - . ID=Physo132932.2;Parent=Physo132932;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_23 . exon 404924 405054 . - . ID=Physo132932.1;Parent=Physo132932;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . biological_region 415429 415433 0.999 + . logic_name=eponine scaffold_23 . biological_region 415514 415519 0.999 + . logic_name=eponine scaffold_23 . biological_region 415554 415560 0.999 - . logic_name=eponine scaffold_23 . biological_region 415644 415650 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 409807 411850 . + . ID=Physo132933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230076;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 409807 411850 . + . ID=Physo132933;Parent=Physo132933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 409807 410035 . + 0 ID=Physo132933;Parent=Physo132933;rank=1 scaffold_23 . exon 409807 410035 . + . ID=Physo132933.1;Parent=Physo132933;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 410259 411850 . + 0 ID=Physo132933;Parent=Physo132933;rank=2 scaffold_23 . exon 410259 411850 . + . ID=Physo132933.2;Parent=Physo132933;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . repeat_region 422646 422679 . ? . description=trf scaffold_23 . repeat_region 425002 425387 . - . description=Gypsy-2-I_PI-int scaffold_23 . repeat_region 429137 429181 . ? . description=dust scaffold_23 ensembl protein_coding_gene 424257 429312 . - . ID=Physo132934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230077;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 424257 429312 . - . ID=Physo132934;Parent=Physo132934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 424257 426433 . - 0 ID=Physo132934;Parent=Physo132934;rank=4 scaffold_23 . exon 424257 426433 . - . ID=Physo132934.4;Parent=Physo132934;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 426499 427608 . - 0 ID=Physo132934;Parent=Physo132934;rank=3 scaffold_23 . exon 426499 427608 . - . ID=Physo132934.3;Parent=Physo132934;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 428028 429022 . - 0 ID=Physo132934;Parent=Physo132934;rank=2 scaffold_23 . exon 428028 429022 . - . ID=Physo132934.2;Parent=Physo132934;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 429140 429312 . - 0 ID=Physo132934;Parent=Physo132934;rank=1 scaffold_23 . exon 429140 429312 . - . ID=Physo132934.1;Parent=Physo132934;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . biological_region 429825 429829 0.999 + . logic_name=eponine scaffold_23 . biological_region 431156 431160 0.999 + . logic_name=eponine scaffold_23 . biological_region 435678 435680 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 434439 437194 . - . ID=Physo132935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230078;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 434439 437194 . - . ID=Physo132935;Parent=Physo132935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 434439 436185 . - . ID=Physo132935.5;Parent=Physo132935;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_23 . CDS 434680 436185 . - 0 ID=Physo132935;Parent=Physo132935;rank=5 scaffold_23 . CDS 436257 436523 . - 0 ID=Physo132935;Parent=Physo132935;rank=4 scaffold_23 . exon 436257 436523 . - . ID=Physo132935.4;Parent=Physo132935;constitutive=1;rank=4 scaffold_23 . CDS 436603 436688 . - 0 ID=Physo132935;Parent=Physo132935;rank=3 scaffold_23 . exon 436603 436688 . - . ID=Physo132935.3;Parent=Physo132935;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 436764 436878 . - 0 ID=Physo132935;Parent=Physo132935;rank=2 scaffold_23 . exon 436764 436878 . - . ID=Physo132935.2;Parent=Physo132935;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 436961 437194 . - 0 ID=Physo132935;Parent=Physo132935;rank=1 scaffold_23 . exon 436961 437194 . - . ID=Physo132935.1;Parent=Physo132935;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 437904 438720 . - . ID=Physo132936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230079;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 437904 438720 . - . ID=Physo132936;Parent=Physo132936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 437904 438720 . - . ID=Physo132936.1;Parent=Physo132936;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 437973 438707 . - 0 ID=Physo132936;Parent=Physo132936;rank=1 scaffold_23 ensembl protein_coding_gene 439016 439686 . - . ID=Physo132937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230080;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 439016 439686 . - . ID=Physo132937;Parent=Physo132937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 439016 439686 . - . ID=Physo132937.1;Parent=Physo132937;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 439017 439685 . - 0 ID=Physo132937;Parent=Physo132937;rank=1 scaffold_23 . repeat_region 444463 444509 . ? . description=dust scaffold_23 . repeat_region 444566 444597 . ? . description=trf scaffold_23 ensembl protein_coding_gene 439835 440383 . + . ID=Physo108659;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230009;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 439835 440383 . + . ID=Physo108659;Parent=Physo108659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 439835 440383 . + 0 ID=Physo108659;Parent=Physo108659;rank=1 scaffold_23 . exon 439835 440383 . + . ID=Physo108659.1;Parent=Physo108659;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 440463 442566 . - . ID=Physo132939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230082;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 440463 442566 . - . ID=Physo132939;Parent=Physo132939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 440463 440946 . - 0 ID=Physo132939;Parent=Physo132939;rank=3 scaffold_23 . exon 440463 440946 . - . ID=Physo132939.3;Parent=Physo132939;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 441026 442410 . - 0 ID=Physo132939;Parent=Physo132939;rank=2 scaffold_23 . exon 441026 442410 . - . ID=Physo132939.2;Parent=Physo132939;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . CDS 442447 442566 . - 0 ID=Physo132939;Parent=Physo132939;rank=1 scaffold_23 . exon 442447 442566 . - . ID=Physo132939.1;Parent=Physo132939;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 442704 446259 . - . ID=Physo132940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230083;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 442704 446259 . - . ID=Physo132940;Parent=Physo132940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 442704 444861 . - 0 ID=Physo132940;Parent=Physo132940;rank=4 scaffold_23 . exon 442704 444861 . - . ID=Physo132940.4;Parent=Physo132940;constitutive=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 444970 445263 . - 0 ID=Physo132940;Parent=Physo132940;rank=3 scaffold_23 . exon 444970 445263 . - . ID=Physo132940.3;Parent=Physo132940;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_23 . CDS 445316 445472 . - 0 ID=Physo132940;Parent=Physo132940;rank=2 scaffold_23 . exon 445316 445472 . - . ID=Physo132940.2;Parent=Physo132940;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_23 . CDS 445869 446259 . - 0 ID=Physo132940;Parent=Physo132940;rank=1 scaffold_23 . exon 445869 446259 . - . ID=Physo132940.1;Parent=Physo132940;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 446490 447298 . - . ID=Physo132941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230084;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 446490 447298 . - . ID=Physo132941;Parent=Physo132941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 446490 447298 . - . ID=Physo132941.1;Parent=Physo132941;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_23 . CDS 446633 447298 . - 0 ID=Physo132941;Parent=Physo132941;rank=1 scaffold_23 ensembl protein_coding_gene 448238 452418 . - . ID=Physo132942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230085;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 448238 452418 . - . ID=Physo132942;Parent=Physo132942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 448238 448867 . - 0 ID=Physo132942;Parent=Physo132942;rank=7 scaffold_23 . exon 448238 448867 . - . ID=Physo132942.7;Parent=Physo132942;constitutive=1;rank=7 scaffold_23 . CDS 448994 449294 . - 0 ID=Physo132942;Parent=Physo132942;rank=6 scaffold_23 . exon 448994 449294 . - . ID=Physo132942.6;Parent=Physo132942;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 . CDS 450075 450133 . - 0 ID=Physo132942;Parent=Physo132942;rank=5 scaffold_23 . CDS 450218 450802 . - 0 ID=Physo132942;Parent=Physo132942;rank=4 scaffold_23 . CDS 450826 450996 . - 0 ID=Physo132942;Parent=Physo132942;rank=3 scaffold_23 . CDS 451061 451371 . - 0 ID=Physo132942;Parent=Physo132942;rank=2 scaffold_23 . CDS 451449 452418 . - 0 ID=Physo132942;Parent=Physo132942;rank=1 scaffold_23 . biological_region 452183 452185 0.999 - . logic_name=eponine scaffold_23 . biological_region 453803 453803 0.999 - . logic_name=eponine scaffold_23 . biological_region 453837 453839 0.999 + . logic_name=eponine scaffold_23 . biological_region 459085 459087 0.999 - . logic_name=eponine scaffold_23 . biological_region 459140 459142 0.999 + . logic_name=eponine scaffold_23 . exon 450075 450133 . - . ID=Physo132942.5;Parent=Physo132942;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_23 . exon 450218 450802 . - . ID=Physo132942.4;Parent=Physo132942;constitutive=1;rank=4 scaffold_23 . exon 450826 450996 . - . ID=Physo132942.3;Parent=Physo132942;constitutive=1;rank=3 scaffold_23 . exon 451061 451371 . - . ID=Physo132942.2;Parent=Physo132942;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . exon 451449 452418 . - . ID=Physo132942.1;Parent=Physo132942;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 453548 454141 . - . ID=Physo132943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230086;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 453548 454141 . - . ID=Physo132943;Parent=Physo132943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 453548 454141 . - 0 ID=Physo132943;Parent=Physo132943;rank=1 scaffold_23 . exon 453548 454141 . - . ID=Physo132943.1;Parent=Physo132943;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 458630 461504 . - . ID=Physo132944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230087;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 458630 461504 . - . ID=Physo132944;Parent=Physo132944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 458630 458879 . - 0 ID=Physo132944;Parent=Physo132944;rank=9 scaffold_23 . exon 458630 458879 . - . ID=Physo132944.9;Parent=Physo132944;constitutive=1;ensembl_phase=2;rank=9 scaffold_23 . CDS 458899 459161 . - 0 ID=Physo132944;Parent=Physo132944;rank=8 scaffold_23 . exon 458899 459161 . - . ID=Physo132944.8;Parent=Physo132944;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_23 . CDS 459183 459332 . - 0 ID=Physo132944;Parent=Physo132944;rank=7 scaffold_23 . exon 459183 459332 . - . ID=Physo132944.7;Parent=Physo132944;constitutive=1;rank=7 scaffold_23 . CDS 459669 459822 . - 0 ID=Physo132944;Parent=Physo132944;rank=6 scaffold_23 . exon 459669 459822 . - . ID=Physo132944.6;Parent=Physo132944;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 . CDS 460060 460494 . - 0 ID=Physo132944;Parent=Physo132944;rank=5 scaffold_23 . CDS 460689 460885 . - 0 ID=Physo132944;Parent=Physo132944;rank=4 scaffold_23 . CDS 460963 461151 . - 0 ID=Physo132944;Parent=Physo132944;rank=3 scaffold_23 . CDS 461211 461285 . - 0 ID=Physo132944;Parent=Physo132944;rank=2 scaffold_23 . CDS 461475 461504 . - 0 ID=Physo132944;Parent=Physo132944;rank=1 scaffold_23 . repeat_region 466275 466317 . ? . description=dust scaffold_23 . repeat_region 466636 466644 . ? . description=dust scaffold_23 . exon 460060 460494 . - . ID=Physo132944.5;Parent=Physo132944;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_23 . exon 460689 460885 . - . ID=Physo132944.4;Parent=Physo132944;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_23 . exon 460963 461151 . - . ID=Physo132944.3;Parent=Physo132944;constitutive=1;rank=3 scaffold_23 . exon 461211 461285 . - . ID=Physo132944.2;Parent=Physo132944;constitutive=1;rank=2 scaffold_23 . exon 461475 461504 . - . ID=Physo132944.1;Parent=Physo132944;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 462418 462936 . + . ID=Physo132945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230088;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 462418 462936 . + . ID=Physo132945;Parent=Physo132945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 462418 462936 . + 0 ID=Physo132945;Parent=Physo132945;rank=1 scaffold_23 . exon 462418 462936 . + . ID=Physo132945.1;Parent=Physo132945;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 464492 465085 . + . ID=Physo132946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230089;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 464492 465085 . + . ID=Physo132946;Parent=Physo132946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 464492 465085 . + 0 ID=Physo132946;Parent=Physo132946;rank=1 scaffold_23 . exon 464492 465085 . + . ID=Physo132946.1;Parent=Physo132946;constitutive=1;rank=1 scaffold_23 . repeat_region 472048 472136 . ? . description=trf scaffold_23 . biological_region 475562 475562 0.999 + . logic_name=eponine scaffold_23 . repeat_region 476088 476225 . ? . description=trf scaffold_23 . biological_region 478617 478621 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 477591 480763 . - . ID=Physo132947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230090;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 477591 480763 . - . ID=Physo132947;Parent=Physo132947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 477591 480465 . - 0 ID=Physo132947;Parent=Physo132947;rank=2 scaffold_23 . exon 477591 480465 . - . ID=Physo132947.2;Parent=Physo132947;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 480582 480763 . - 0 ID=Physo132947;Parent=Physo132947;rank=1 scaffold_23 . repeat_region 485584 485597 . ? . description=dust scaffold_23 . repeat_region 487025 487034 . ? . description=dust scaffold_23 . exon 480582 480763 . - . ID=Physo132947.1;Parent=Physo132947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 481551 483051 . - . ID=Physo132948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230091;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 481551 483051 . - . ID=Physo132948;Parent=Physo132948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 481551 481660 . - 0 ID=Physo132948;Parent=Physo132948;rank=3 scaffold_23 . exon 481551 481660 . - . ID=Physo132948.3;Parent=Physo132948;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 481737 481800 . - 0 ID=Physo132948;Parent=Physo132948;rank=2 scaffold_23 . exon 481737 481800 . - . ID=Physo132948.2;Parent=Physo132948;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 481928 482929 . - 0 ID=Physo132948;Parent=Physo132948;rank=1 scaffold_23 . exon 481928 483051 . - . ID=Physo132948.1;Parent=Physo132948;constitutive=1;ensembl_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 484740 485477 . + . ID=Physo132949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230092;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 484740 485477 . + . ID=Physo132949;Parent=Physo132949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 484740 485477 . + 0 ID=Physo132949;Parent=Physo132949;rank=1 scaffold_23 . exon 484740 485477 . + . ID=Physo132949.1;Parent=Physo132949;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 486192 489113 . + . ID=Physo156614;biotype=protein_coding;external_name=C_scaffold_23000015;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 486192 489113 . + . ID=Physo156614;Parent=Physo156614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 486192 486321 . + 0 ID=Physo156614;Parent=Physo156614;rank=1 scaffold_23 . exon 486192 486321 . + . ID=Physo156614.1;Parent=Physo156614;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 486377 486517 . + 0 ID=Physo156614;Parent=Physo156614;rank=2 scaffold_23 . exon 486377 486517 . + . ID=Physo156614.2;Parent=Physo156614;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 486562 486870 . + 0 ID=Physo156614;Parent=Physo156614;rank=3 scaffold_23 . exon 486562 486870 . + . ID=Physo156614.3;Parent=Physo156614;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 487438 488134 . + 0 ID=Physo156614;Parent=Physo156614;rank=4 scaffold_23 . exon 487438 488134 . + . ID=Physo156614.4;Parent=Physo156614;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_23 . CDS 488270 488712 . + 0 ID=Physo156614;Parent=Physo156614;rank=5 scaffold_23 . exon 488270 488712 . + . ID=Physo156614.5;Parent=Physo156614;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_23 . CDS 488758 489113 . + 0 ID=Physo156614;Parent=Physo156614;rank=6 scaffold_23 . exon 488758 489113 . + . ID=Physo156614.6;Parent=Physo156614;constitutive=1;ensembl_phase=1;rank=6 scaffold_23 . repeat_region 489982 490007 . ? . description=trf scaffold_23 . repeat_region 490078 490103 . ? . description=trf scaffold_23 . biological_region 490292 490295 0.999 - . logic_name=eponine scaffold_23 . biological_region 492366 492371 0.999 - . logic_name=eponine scaffold_23 . repeat_region 496793 496813 . ? . description=trf scaffold_23 ensembl protein_coding_gene 489880 492703 . + . ID=Physo132951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230094;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 489880 492703 . + . ID=Physo132951;Parent=Physo132951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 489880 489957 . + . ID=Physo132951.1;Parent=Physo132951;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . exon 491478 492703 . + . ID=Physo132951.2;Parent=Physo132951;constitutive=1;ensembl_phase=-1;rank=2 scaffold_23 . CDS 491672 492703 . + 0 ID=Physo132951;Parent=Physo132951;rank=1 scaffold_23 ensembl protein_coding_gene 493038 493957 . - . ID=Physo132952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230095;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 493038 493957 . - . ID=Physo132952;Parent=Physo132952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 493038 493549 . - 0 ID=Physo132952;Parent=Physo132952;rank=2 scaffold_23 . exon 493038 493549 . - . ID=Physo132952.2;Parent=Physo132952;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 493617 493920 . - 0 ID=Physo132952;Parent=Physo132952;rank=1 scaffold_23 . exon 493617 493957 . - . ID=Physo132952.1;Parent=Physo132952;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_23 . repeat_region 500336 500355 . ? . description=dust scaffold_23 . repeat_region 503559 503573 . ? . description=dust scaffold_23 . repeat_region 505512 505631 . - . description=Gypsy-2-LTR_PI scaffold_23 . repeat_region 507482 509744 . - . description=Gypsy-2-I_PI-int scaffold_23 ensembl protein_coding_gene 503952 504848 . + . ID=Physo108661;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230011;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 503952 504848 . + . ID=Physo108661;Parent=Physo108661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 503952 504848 . + 0 ID=Physo108661;Parent=Physo108661;rank=1 scaffold_23 . exon 503952 504848 . + . ID=Physo108661.1;Parent=Physo108661;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 508222 508581 . - . ID=Physo108662;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230012;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 508222 508581 . - . ID=Physo108662;Parent=Physo108662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 508222 508581 . - 0 ID=Physo108662;Parent=Physo108662;rank=1 scaffold_23 . exon 508222 508581 . - . ID=Physo108662.1;Parent=Physo108662;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 505936 507050 . + . ID=Physo132955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230098;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 505936 507050 . + . ID=Physo132955;Parent=Physo132955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 505936 506320 . + 0 ID=Physo132955;Parent=Physo132955;rank=1 scaffold_23 . exon 505936 506320 . + . ID=Physo132955.1;Parent=Physo132955;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 506770 507050 . + 0 ID=Physo132955;Parent=Physo132955;rank=2 scaffold_23 . exon 506770 507050 . + . ID=Physo132955.2;Parent=Physo132955;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 ensembl protein_coding_gene 508897 512380 . - . ID=Physo132957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230100;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 508897 512380 . - . ID=Physo132957;Parent=Physo132957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 508897 509391 . - 0 ID=Physo132957;Parent=Physo132957;rank=5 scaffold_23 . exon 508897 509391 . - . ID=Physo132957.5;Parent=Physo132957;constitutive=1;rank=5 scaffold_23 . CDS 509448 509735 . - 0 ID=Physo132957;Parent=Physo132957;rank=4 scaffold_23 . exon 509448 509735 . - . ID=Physo132957.4;Parent=Physo132957;constitutive=1;rank=4 scaffold_23 . CDS 509780 511010 . - 0 ID=Physo132957;Parent=Physo132957;rank=3 scaffold_23 . CDS 511216 511450 . - 0 ID=Physo132957;Parent=Physo132957;rank=2 scaffold_23 . CDS 511573 512380 . - 0 ID=Physo132957;Parent=Physo132957;rank=1 scaffold_23 ensembl protein_coding_gene 502071 502955 . - . ID=Physo156616;biotype=protein_coding;external_name=C_scaffold_23000017;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 502071 502955 . - . ID=Physo156616;Parent=Physo156616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 502071 502955 . - 0 ID=Physo156616;Parent=Physo156616;rank=1 scaffold_23 . exon 502071 502955 . - . ID=Physo156616.1;Parent=Physo156616;constitutive=1;rank=1 scaffold_23 . biological_region 512870 512873 0.999 + . logic_name=eponine scaffold_23 . biological_region 514470 514473 0.999 + . logic_name=eponine scaffold_23 . biological_region 514916 514917 0.999 - . logic_name=eponine scaffold_23 . biological_region 515251 515253 0.999 - . logic_name=eponine scaffold_23 . biological_region 515299 515300 0.999 - . logic_name=eponine scaffold_23 . biological_region 515381 515385 0.999 - . logic_name=eponine scaffold_23 . biological_region 516924 516927 0.999 - . logic_name=eponine scaffold_23 . biological_region 517332 517339 0.999 + . logic_name=eponine scaffold_23 . biological_region 517354 517355 0.999 + . logic_name=eponine scaffold_23 . biological_region 517403 517405 0.999 + . logic_name=eponine scaffold_23 . biological_region 517447 517450 0.999 + . logic_name=eponine scaffold_23 . biological_region 517516 517521 0.999 - . logic_name=eponine scaffold_23 . biological_region 517530 517533 0.999 - . logic_name=eponine scaffold_23 . biological_region 518403 518406 0.999 + . logic_name=eponine scaffold_23 . biological_region 519585 519586 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 514374 515457 . + . ID=Physo108663;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230013;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 514374 515457 . + . ID=Physo108663;Parent=Physo108663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 514374 515457 . + . ID=Physo108663.1;Parent=Physo108663;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 514443 515327 . + 0 ID=Physo108663;Parent=Physo108663;rank=1 scaffold_23 . exon 509780 511010 . - . ID=Physo132957.3;Parent=Physo132957;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . exon 511216 511450 . - . ID=Physo132957.2;Parent=Physo132957;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_23 . exon 511573 512380 . - . ID=Physo132957.1;Parent=Physo132957;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 513146 513604 . + . ID=Physo132958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230101;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 513146 513604 . + . ID=Physo132958;Parent=Physo132958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 513146 513604 . + 0 ID=Physo132958;Parent=Physo132958;rank=1 scaffold_23 . exon 513146 513604 . + . ID=Physo132958.1;Parent=Physo132958;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 515671 516547 . - . ID=Physo132960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230103;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 515671 516547 . - . ID=Physo132960;Parent=Physo132960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 515671 515857 . - 0 ID=Physo132960;Parent=Physo132960;rank=2 scaffold_23 . exon 515671 515857 . - . ID=Physo132960.2;Parent=Physo132960;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 515901 516547 . - 0 ID=Physo132960;Parent=Physo132960;rank=1 scaffold_23 . exon 515901 516547 . - . ID=Physo132960.1;Parent=Physo132960;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 516775 517593 . - . ID=Physo132961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230104;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 516775 517593 . - . ID=Physo132961;Parent=Physo132961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 516775 517593 . - 0 ID=Physo132961;Parent=Physo132961;rank=1 scaffold_23 . exon 516775 517593 . - . ID=Physo132961.1;Parent=Physo132961;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 519557 520369 . + . ID=Physo132963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230106;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 519557 520369 . + . ID=Physo132963;Parent=Physo132963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 519557 520369 . + 0 ID=Physo132963;Parent=Physo132963;rank=1 scaffold_23 . exon 519557 520369 . + . ID=Physo132963.1;Parent=Physo132963;constitutive=1;rank=1 scaffold_23 . repeat_region 520729 520741 . ? . description=dust scaffold_23 . repeat_region 523837 523855 . ? . description=dust scaffold_23 ensembl protein_coding_gene 529076 529980 . - . ID=Physo108664;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230014;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 529076 529980 . - . ID=Physo108664;Parent=Physo108664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 529076 529536 . - 0 ID=Physo108664;Parent=Physo108664;rank=2 scaffold_23 . exon 529076 529536 . - . ID=Physo108664.2;Parent=Physo108664;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 529610 529928 . - 0 ID=Physo108664;Parent=Physo108664;rank=1 scaffold_23 . exon 529610 529980 . - . ID=Physo108664.1;Parent=Physo108664;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 521575 522474 . + . ID=Physo132964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230107;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 521575 522474 . + . ID=Physo132964;Parent=Physo132964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 521575 522474 . + 0 ID=Physo132964;Parent=Physo132964;rank=1 scaffold_23 . exon 521575 522474 . + . ID=Physo132964.1;Parent=Physo132964;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 523327 524157 . + . ID=Physo132965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230108;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 523327 524157 . + . ID=Physo132965;Parent=Physo132965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 523327 524016 . + 0 ID=Physo132965;Parent=Physo132965;rank=1 scaffold_23 . exon 523327 524157 . + . ID=Physo132965.1;Parent=Physo132965;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 524459 526335 . - . ID=Physo132966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230109;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 524459 526335 . - . ID=Physo132966;Parent=Physo132966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 524459 526335 . - . ID=Physo132966.1;Parent=Physo132966;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_23 . CDS 524512 526335 . - 0 ID=Physo132966;Parent=Physo132966;rank=1 scaffold_23 ensembl protein_coding_gene 526878 528840 . + . ID=Physo132967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230110;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 526878 528840 . + . ID=Physo132967;Parent=Physo132967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 526878 527251 . + 0 ID=Physo132967;Parent=Physo132967;rank=1 scaffold_23 . exon 526878 527251 . + . ID=Physo132967.1;Parent=Physo132967;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 527352 528433 . + 0 ID=Physo132967;Parent=Physo132967;rank=2 scaffold_23 . exon 527352 528433 . + . ID=Physo132967.2;Parent=Physo132967;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 528506 528660 . + 0 ID=Physo132967;Parent=Physo132967;rank=3 scaffold_23 . exon 528506 528840 . + . ID=Physo132967.3;Parent=Physo132967;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_23 . biological_region 539282 539283 0.999 - . logic_name=eponine scaffold_23 . biological_region 539333 539341 0.999 + . logic_name=eponine scaffold_23 . biological_region 539349 539352 0.999 - . logic_name=eponine scaffold_23 . biological_region 539444 539445 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 533647 534435 . + . ID=Physo108665;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230015;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 533647 534435 . + . ID=Physo108665;Parent=Physo108665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 533647 534435 . + 0 ID=Physo108665;Parent=Physo108665;rank=1 scaffold_23 . exon 533647 534435 . + . ID=Physo108665.1;Parent=Physo108665;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 536622 537455 . + . ID=Physo108666;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230016;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 536622 537455 . + . ID=Physo108666;Parent=Physo108666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 536622 537455 . + 0 ID=Physo108666;Parent=Physo108666;rank=1 scaffold_23 . exon 536622 537455 . + . ID=Physo108666.1;Parent=Physo108666;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 535474 536232 . + . ID=Physo132970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230113;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 535474 536232 . + . ID=Physo132970;Parent=Physo132970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 535474 535884 . + 0 ID=Physo132970;Parent=Physo132970;rank=1 scaffold_23 . exon 535474 535884 . + . ID=Physo132970.1;Parent=Physo132970;constitutive=1;rank=1 scaffold_23 . CDS 535957 536232 . + 0 ID=Physo132970;Parent=Physo132970;rank=2 scaffold_23 . exon 535957 536232 . + . ID=Physo132970.2;Parent=Physo132970;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 538137 538884 . + . ID=Physo132972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230115;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 538137 538884 . + . ID=Physo132972;Parent=Physo132972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 538137 538308 . + . ID=Physo132972.1;Parent=Physo132972;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 538227 538308 . + 0 ID=Physo132972;Parent=Physo132972;rank=1 scaffold_23 . CDS 538337 538509 . + 0 ID=Physo132972;Parent=Physo132972;rank=2 scaffold_23 . exon 538337 538520 . + . ID=Physo132972.2;Parent=Physo132972;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_23 . exon 538583 538846 . + . ID=Physo132972.3;Parent=Physo132972;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_23 . exon 538870 538884 . + . ID=Physo132972.4;Parent=Physo132972;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_23 . repeat_region 547441 547711 . ? . description=trf scaffold_23 ensembl protein_coding_gene 540322 540849 . - . ID=Physo132973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230116;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 540322 540849 . - . ID=Physo132973;Parent=Physo132973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 540322 540849 . - 0 ID=Physo132973;Parent=Physo132973;rank=1 scaffold_23 . exon 540322 540849 . - . ID=Physo132973.1;Parent=Physo132973;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 541213 543626 . + . ID=Physo132974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230117;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 541213 543626 . + . ID=Physo132974;Parent=Physo132974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 541213 541221 . + 0 ID=Physo132974;Parent=Physo132974;rank=1 scaffold_23 . exon 541213 541221 . + . ID=Physo132974.1;Parent=Physo132974;constitutive=1;rank=1 scaffold_23 . CDS 541305 543626 . + 0 ID=Physo132974;Parent=Physo132974;rank=2 scaffold_23 . exon 541305 543626 . + . ID=Physo132974.2;Parent=Physo132974;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 545591 546573 . - . ID=Physo132975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230118;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 545591 546573 . - . ID=Physo132975;Parent=Physo132975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 545591 545703 . - 0 ID=Physo132975;Parent=Physo132975;rank=3 scaffold_23 . exon 545591 545703 . - . ID=Physo132975.3;Parent=Physo132975;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 545781 545821 . - 0 ID=Physo132975;Parent=Physo132975;rank=2 scaffold_23 . exon 545781 545821 . - . ID=Physo132975.2;Parent=Physo132975;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 545990 546573 . - 0 ID=Physo132975;Parent=Physo132975;rank=1 scaffold_23 . exon 545990 546573 . - . ID=Physo132975.1;Parent=Physo132975;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . biological_region 550090 550090 0.999 - . logic_name=eponine scaffold_23 . biological_region 550503 550504 0.999 + . logic_name=eponine scaffold_23 . biological_region 550568 550569 0.999 + . logic_name=eponine scaffold_23 . biological_region 550583 550588 0.999 - . logic_name=eponine scaffold_23 . biological_region 550713 550717 0.999 + . logic_name=eponine scaffold_23 . biological_region 551133 551136 0.999 - . logic_name=eponine scaffold_23 . biological_region 551660 551660 0.999 + . logic_name=eponine scaffold_23 . biological_region 551708 551711 0.999 + . logic_name=eponine scaffold_23 . biological_region 551716 551721 0.999 + . logic_name=eponine scaffold_23 . repeat_region 552477 552484 . ? . description=dust scaffold_23 . biological_region 553322 553327 0.999 - . logic_name=eponine scaffold_23 . biological_region 554603 554606 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 550215 551274 . + . ID=Physo132976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230119;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 550215 551274 . + . ID=Physo132976;Parent=Physo132976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 550215 551274 . + . ID=Physo132976.1;Parent=Physo132976;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 550217 550912 . + 0 ID=Physo132976;Parent=Physo132976;rank=1 scaffold_23 ensembl protein_coding_gene 551588 552347 . - . ID=Physo132977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230120;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 551588 552347 . - . ID=Physo132977;Parent=Physo132977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 551588 552050 . - 0 ID=Physo132977;Parent=Physo132977;rank=2 scaffold_23 . exon 551588 552050 . - . ID=Physo132977.2;Parent=Physo132977;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 552145 552347 . - 0 ID=Physo132977;Parent=Physo132977;rank=1 scaffold_23 . exon 552145 552347 . - . ID=Physo132977.1;Parent=Physo132977;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 552499 553285 . - . ID=Physo132978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230121;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 552499 553285 . - . ID=Physo132978;Parent=Physo132978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 552499 552970 . - 0 ID=Physo132978;Parent=Physo132978;rank=2 scaffold_23 . exon 552499 552970 . - . ID=Physo132978.2;Parent=Physo132978;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 553080 553285 . - 0 ID=Physo132978;Parent=Physo132978;rank=1 scaffold_23 . exon 553080 553285 . - . ID=Physo132978.1;Parent=Physo132978;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 554017 554598 . + . ID=Physo132979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230122;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 554017 554598 . + . ID=Physo132979;Parent=Physo132979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 554017 554598 . + 0 ID=Physo132979;Parent=Physo132979;rank=1 scaffold_23 . exon 554017 554598 . + . ID=Physo132979.1;Parent=Physo132979;constitutive=1;rank=1 scaffold_23 . repeat_region 568738 568778 . ? . description=trf scaffold_23 ensembl protein_coding_gene 561257 562296 . + . ID=Physo132980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230123;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 561257 562296 . + . ID=Physo132980;Parent=Physo132980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 561257 561400 . + . ID=Physo132980.1;Parent=Physo132980;constitutive=1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 561344 561400 . + 0 ID=Physo132980;Parent=Physo132980;rank=1 scaffold_23 . CDS 561426 561521 . + 0 ID=Physo132980;Parent=Physo132980;rank=2 scaffold_23 . exon 561426 561521 . + . ID=Physo132980.2;Parent=Physo132980;constitutive=1;rank=2 scaffold_23 . CDS 561543 561992 . + 0 ID=Physo132980;Parent=Physo132980;rank=3 scaffold_23 . exon 561543 561992 . + . ID=Physo132980.3;Parent=Physo132980;constitutive=1;rank=3 scaffold_23 . CDS 562066 562296 . + 0 ID=Physo132980;Parent=Physo132980;rank=4 scaffold_23 . exon 562066 562296 . + . ID=Physo132980.4;Parent=Physo132980;constitutive=1;rank=4 scaffold_23 ensembl protein_coding_gene 566031 569261 . + . ID=Physo132981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230124;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 566031 569261 . + . ID=Physo132981;Parent=Physo132981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 566031 569261 . + 0 ID=Physo132981;Parent=Physo132981;rank=1 scaffold_23 . exon 566031 569261 . + . ID=Physo132981.1;Parent=Physo132981;constitutive=1;rank=1 scaffold_23 . repeat_region 574796 574803 . ? . description=dust scaffold_23 . repeat_region 577121 577170 . ? . description=dust scaffold_23 . repeat_region 578771 578820 . ? . description=dust scaffold_23 ensembl protein_coding_gene 572265 573185 . + . ID=Physo132982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230125;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 572265 573185 . + . ID=Physo132982;Parent=Physo132982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 572265 572605 . + 0 ID=Physo132982;Parent=Physo132982;rank=1 scaffold_23 . exon 572265 572605 . + . ID=Physo132982.1;Parent=Physo132982;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 572849 573185 . + 0 ID=Physo132982;Parent=Physo132982;rank=2 scaffold_23 . exon 572849 573185 . + . ID=Physo132982.2;Parent=Physo132982;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 ensembl protein_coding_gene 575972 579135 . + . ID=Physo132983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230126;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 575972 579135 . + . ID=Physo132983;Parent=Physo132983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 575972 577117 . + 0 ID=Physo132983;Parent=Physo132983;rank=1 scaffold_23 . exon 575972 577117 . + . ID=Physo132983.1;Parent=Physo132983;constitutive=1;rank=1 scaffold_23 . CDS 577630 578726 . + 0 ID=Physo132983;Parent=Physo132983;rank=2 scaffold_23 . exon 577630 578726 . + . ID=Physo132983.2;Parent=Physo132983;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . CDS 578926 578984 . + 0 ID=Physo132983;Parent=Physo132983;rank=3 scaffold_23 . exon 578926 578984 . + . ID=Physo132983.3;Parent=Physo132983;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 579128 579135 . + 0 ID=Physo132983;Parent=Physo132983;rank=4 scaffold_23 . exon 579128 579135 . + . ID=Physo132983.4;Parent=Physo132983;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . repeat_region 580928 580958 . ? . description=trf scaffold_23 . biological_region 581071 581073 0.999 - . logic_name=eponine scaffold_23 . biological_region 583611 583613 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 580232 580843 . + . ID=Physo108667;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230017;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 580232 580843 . + . ID=Physo108667;Parent=Physo108667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 580232 580843 . + 0 ID=Physo108667;Parent=Physo108667;rank=1 scaffold_23 . exon 580232 580843 . + . ID=Physo108667.1;Parent=Physo108667;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 581542 586208 . + . ID=Physo132985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230128;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 581542 586208 . + . ID=Physo132985;Parent=Physo132985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 581542 582378 . + 0 ID=Physo132985;Parent=Physo132985;rank=1 scaffold_23 . exon 581542 582378 . + . ID=Physo132985.1;Parent=Physo132985;constitutive=1;rank=1 scaffold_23 . CDS 582449 583253 . + 0 ID=Physo132985;Parent=Physo132985;rank=2 scaffold_23 . exon 582449 583253 . + . ID=Physo132985.2;Parent=Physo132985;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 583361 583861 . + 0 ID=Physo132985;Parent=Physo132985;rank=3 scaffold_23 . exon 583361 583861 . + . ID=Physo132985.3;Parent=Physo132985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 584008 584217 . + 0 ID=Physo132985;Parent=Physo132985;rank=4 scaffold_23 . exon 584008 584217 . + . ID=Physo132985.4;Parent=Physo132985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 584618 584939 . + 0 ID=Physo132985;Parent=Physo132985;rank=5 scaffold_23 . exon 584618 584939 . + . ID=Physo132985.5;Parent=Physo132985;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_23 . CDS 585017 586208 . + 0 ID=Physo132985;Parent=Physo132985;rank=6 scaffold_23 . exon 585017 586208 . + . ID=Physo132985.6;Parent=Physo132985;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 ensembl protein_coding_gene 586397 587409 . - . ID=Physo132986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230129;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 586397 587409 . - . ID=Physo132986;Parent=Physo132986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 586397 586424 . - 0 ID=Physo132986;Parent=Physo132986;rank=2 scaffold_23 . exon 586397 586424 . - . ID=Physo132986.2;Parent=Physo132986;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 586565 587409 . - 0 ID=Physo132986;Parent=Physo132986;rank=1 scaffold_23 . exon 586565 587409 . - . ID=Physo132986.1;Parent=Physo132986;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . repeat_region 593750 593840 . ? . description=dust scaffold_23 ensembl protein_coding_gene 591000 593673 . - . ID=Physo114999;biotype=protein_coding;external_name=estExt_Genewise1.C_230074;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 591000 593673 . - . ID=Physo114999;Parent=Physo114999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 591000 591314 . - . ID=Physo114999.3;Parent=Physo114999;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_23 . CDS 591074 591314 . - 0 ID=Physo114999;Parent=Physo114999;rank=3 scaffold_23 . CDS 591386 591721 . - 0 ID=Physo114999;Parent=Physo114999;rank=2 scaffold_23 . exon 591386 591721 . - . ID=Physo114999.2;Parent=Physo114999;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_23 . CDS 591794 593664 . - 0 ID=Physo114999;Parent=Physo114999;rank=1 scaffold_23 . exon 591794 593673 . - . ID=Physo114999.1;Parent=Physo114999;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 590072 590811 . - . ID=Physo132987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230130;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 590072 590811 . - . ID=Physo132987;Parent=Physo132987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 590072 590543 . - 0 ID=Physo132987;Parent=Physo132987;rank=2 scaffold_23 . exon 590072 590543 . - . ID=Physo132987.2;Parent=Physo132987;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 590609 590811 . - 0 ID=Physo132987;Parent=Physo132987;rank=1 scaffold_23 . exon 590609 590811 . - . ID=Physo132987.1;Parent=Physo132987;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 ensembl protein_coding_gene 594157 596079 . - . ID=Physo132989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230132;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 594157 596079 . - . ID=Physo132989;Parent=Physo132989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 594157 594357 . - 0 ID=Physo132989;Parent=Physo132989;rank=7 scaffold_23 . exon 594157 594357 . - . ID=Physo132989.7;Parent=Physo132989;constitutive=1;rank=7 scaffold_23 . CDS 594431 594727 . - 0 ID=Physo132989;Parent=Physo132989;rank=6 scaffold_23 . exon 594431 594727 . - . ID=Physo132989.6;Parent=Physo132989;constitutive=1;rank=6 scaffold_23 . CDS 594803 594892 . - 0 ID=Physo132989;Parent=Physo132989;rank=5 scaffold_23 . exon 594803 594892 . - . ID=Physo132989.5;Parent=Physo132989;constitutive=1;rank=5 scaffold_23 . CDS 594961 595474 . - 0 ID=Physo132989;Parent=Physo132989;rank=4 scaffold_23 . exon 594961 595474 . - . ID=Physo132989.4;Parent=Physo132989;constitutive=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 595559 595662 . - 0 ID=Physo132989;Parent=Physo132989;rank=3 scaffold_23 . exon 595559 595662 . - . ID=Physo132989.3;Parent=Physo132989;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_23 . CDS 595756 595908 . - 0 ID=Physo132989;Parent=Physo132989;rank=2 scaffold_23 . exon 595756 595908 . - . ID=Physo132989.2;Parent=Physo132989;constitutive=1;rank=2 scaffold_23 . CDS 595993 596079 . - 0 ID=Physo132989;Parent=Physo132989;rank=1 scaffold_23 . exon 595993 596079 . - . ID=Physo132989.1;Parent=Physo132989;constitutive=1;rank=1 scaffold_23 . repeat_region 604563 604583 . ? . description=trf scaffold_23 . biological_region 604777 604779 0.999 - . logic_name=eponine scaffold_23 . biological_region 608408 608410 0.999 - . logic_name=eponine scaffold_23 . biological_region 608478 608480 0.999 - . logic_name=eponine scaffold_23 . biological_region 608989 608993 0.999 + . logic_name=eponine scaffold_23 . repeat_region 609130 609179 . ? . description=trf scaffold_23 ensembl protein_coding_gene 601621 602185 . + . ID=Physo132990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230133;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 601621 602185 . + . ID=Physo132990;Parent=Physo132990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 601621 601782 . + 0 ID=Physo132990;Parent=Physo132990;rank=1 scaffold_23 . exon 601621 601782 . + . ID=Physo132990.1;Parent=Physo132990;constitutive=1;rank=1 scaffold_23 . CDS 601916 602185 . + 0 ID=Physo132990;Parent=Physo132990;rank=2 scaffold_23 . exon 601916 602185 . + . ID=Physo132990.2;Parent=Physo132990;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 608993 613456 . + . ID=Physo132992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230135;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 608993 613456 . + . ID=Physo132992;Parent=Physo132992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 608993 610277 . + 0 ID=Physo132992;Parent=Physo132992;rank=1 scaffold_23 . exon 608993 610277 . + . ID=Physo132992.1;Parent=Physo132992;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 610697 612311 . + 0 ID=Physo132992;Parent=Physo132992;rank=2 scaffold_23 . CDS 612880 613456 . + 0 ID=Physo132992;Parent=Physo132992;rank=3 scaffold_23 ensembl protein_coding_gene 604666 605788 . + . ID=Physo156618;biotype=protein_coding;external_name=C_scaffold_23000019;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 604666 605788 . + . ID=Physo156618;Parent=Physo156618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 604666 604919 . + 0 ID=Physo156618;Parent=Physo156618;rank=1 scaffold_23 . exon 604666 604919 . + . ID=Physo156618.1;Parent=Physo156618;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 604993 605066 . + 0 ID=Physo156618;Parent=Physo156618;rank=2 scaffold_23 . exon 604993 605066 . + . ID=Physo156618.2;Parent=Physo156618;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 605141 605214 . + 0 ID=Physo156618;Parent=Physo156618;rank=3 scaffold_23 . exon 605141 605214 . + . ID=Physo156618.3;Parent=Physo156618;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 605303 605575 . + 0 ID=Physo156618;Parent=Physo156618;rank=4 scaffold_23 . exon 605303 605575 . + . ID=Physo156618.4;Parent=Physo156618;constitutive=1;rank=4 scaffold_23 . CDS 605692 605733 . + 0 ID=Physo156618;Parent=Physo156618;rank=5 scaffold_23 . exon 605692 605733 . + . ID=Physo156618.5;Parent=Physo156618;constitutive=1;rank=5 scaffold_23 . CDS 605786 605788 . + 0 ID=Physo156618;Parent=Physo156618;rank=6 scaffold_23 . exon 605786 605788 . + . ID=Physo156618.6;Parent=Physo156618;constitutive=1;rank=6 scaffold_23 . repeat_region 612720 612831 . + . description=Gypsy-2-I_PI-int scaffold_23 . repeat_region 614572 614579 . ? . description=dust scaffold_23 . exon 610697 612311 . + . ID=Physo132992.2;Parent=Physo132992;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_23 . exon 612880 613456 . + . ID=Physo132992.3;Parent=Physo132992;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . repeat_region 632424 632436 . ? . description=dust scaffold_23 . repeat_region 635808 635851 . ? . description=dust scaffold_23 . biological_region 635861 635863 0.999 + . logic_name=eponine scaffold_23 . biological_region 635863 635872 0.999 - . logic_name=eponine scaffold_23 . biological_region 635909 635917 0.999 - . logic_name=eponine scaffold_23 . biological_region 635920 635924 0.999 + . logic_name=eponine scaffold_23 . biological_region 635943 635946 0.999 + . logic_name=eponine scaffold_23 . biological_region 636190 636195 0.999 - . logic_name=eponine scaffold_23 . biological_region 636200 636203 0.999 + . logic_name=eponine scaffold_23 . repeat_region 637048 637055 . ? . description=dust scaffold_23 . biological_region 637514 637518 0.999 + . logic_name=eponine scaffold_23 . biological_region 637563 637569 0.999 - . logic_name=eponine scaffold_23 . biological_region 637606 637608 0.999 - . logic_name=eponine scaffold_23 . biological_region 638520 638524 0.999 + . logic_name=eponine scaffold_23 . biological_region 639546 639548 0.999 + . logic_name=eponine scaffold_23 ensembl tRNA_gene 635349 635421 . - . ID=EPrPSOG00000000105;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_23 ensembl transcript 635349 635421 . - . ID=EPrPSOT00000000105;Parent=EPrPSOG00000000105;biotype=tRNA;logic_name=ncrna_eg scaffold_23 . exon 635349 635421 . - . ID=EPrPSOE00000000105;Parent=EPrPSOT00000000105;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 635755 637791 . + . ID=Physo132993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230136;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 635755 637791 . + . ID=Physo132993;Parent=Physo132993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 635755 635998 . + 0 ID=Physo132993;Parent=Physo132993;rank=1 scaffold_23 . exon 635755 635998 . + . ID=Physo132993.1;Parent=Physo132993;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 636069 636348 . + 0 ID=Physo132993;Parent=Physo132993;rank=2 scaffold_23 . exon 636069 636348 . + . ID=Physo132993.2;Parent=Physo132993;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_23 . CDS 636456 636976 . + 0 ID=Physo132993;Parent=Physo132993;rank=3 scaffold_23 . exon 636456 636976 . + . ID=Physo132993.3;Parent=Physo132993;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 637061 637227 . + 0 ID=Physo132993;Parent=Physo132993;rank=4 scaffold_23 . exon 637061 637227 . + . ID=Physo132993.4;Parent=Physo132993;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 637336 637791 . + 0 ID=Physo132993;Parent=Physo132993;rank=5 scaffold_23 . exon 637336 637791 . + . ID=Physo132993.5;Parent=Physo132993;constitutive=1;rank=5 scaffold_23 . repeat_region 643123 643142 . ? . description=trf scaffold_23 . repeat_region 647486 647532 . ? . description=trf scaffold_23 ensembl tRNA_gene 645903 645975 . + . ID=EPrPSOG00000000179;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_23 ensembl transcript 645903 645975 . + . ID=EPrPSOT00000000179;Parent=EPrPSOG00000000179;biotype=tRNA;logic_name=ncrna_eg scaffold_23 . exon 645903 645975 . + . ID=EPrPSOE00000000179;Parent=EPrPSOT00000000179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 640316 641386 . + . ID=Physo132994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230137;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 640316 641386 . + . ID=Physo132994;Parent=Physo132994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 640316 641386 . + 0 ID=Physo132994;Parent=Physo132994;rank=1 scaffold_23 . exon 640316 641386 . + . ID=Physo132994.1;Parent=Physo132994;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 641883 642545 . + . ID=Physo132995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230138;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 641883 642545 . + . ID=Physo132995;Parent=Physo132995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 641883 642048 . + 0 ID=Physo132995;Parent=Physo132995;rank=1 scaffold_23 . exon 641883 642048 . + . ID=Physo132995.1;Parent=Physo132995;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 642131 642287 . + 0 ID=Physo132995;Parent=Physo132995;rank=2 scaffold_23 . exon 642131 642287 . + . ID=Physo132995.2;Parent=Physo132995;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_23 . CDS 642366 642402 . + 0 ID=Physo132995;Parent=Physo132995;rank=3 scaffold_23 . exon 642366 642545 . + . ID=Physo132995.3;Parent=Physo132995;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_23 ensembl protein_coding_gene 642741 645629 . - . ID=Physo132996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230139;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 642741 645629 . - . ID=Physo132996;Parent=Physo132996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 642741 644899 . - 0 ID=Physo132996;Parent=Physo132996;rank=2 scaffold_23 . exon 642741 644899 . - . ID=Physo132996.2;Parent=Physo132996;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 644991 645453 . - 0 ID=Physo132996;Parent=Physo132996;rank=1 scaffold_23 . exon 644991 645629 . - . ID=Physo132996.1;Parent=Physo132996;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 649367 650222 . - . ID=Physo132997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230140;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 649367 650222 . - . ID=Physo132997;Parent=Physo132997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 649367 649658 . - 0 ID=Physo132997;Parent=Physo132997;rank=2 scaffold_23 . exon 649367 649658 . - . ID=Physo132997.2;Parent=Physo132997;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 649860 650113 . - 0 ID=Physo132997;Parent=Physo132997;rank=1 scaffold_23 . biological_region 659246 659250 0.999 + . logic_name=eponine scaffold_23 . exon 649860 650222 . - . ID=Physo132997.1;Parent=Physo132997;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 651223 652117 . - . ID=Physo132998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230141;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 651223 652117 . - . ID=Physo132998;Parent=Physo132998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 651223 651255 . - 0 ID=Physo132998;Parent=Physo132998;rank=3 scaffold_23 . exon 651223 651255 . - . ID=Physo132998.3;Parent=Physo132998;constitutive=1;rank=3 scaffold_23 . CDS 651335 651625 . - 0 ID=Physo132998;Parent=Physo132998;rank=2 scaffold_23 . exon 651335 651625 . - . ID=Physo132998.2;Parent=Physo132998;constitutive=1;rank=2 scaffold_23 . CDS 651875 652117 . - 0 ID=Physo132998;Parent=Physo132998;rank=1 scaffold_23 . exon 651875 652117 . - . ID=Physo132998.1;Parent=Physo132998;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 652580 653795 . - . ID=Physo132999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230142;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 652580 653795 . - . ID=Physo132999;Parent=Physo132999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 652580 653271 . - 0 ID=Physo132999;Parent=Physo132999;rank=3 scaffold_23 . exon 652580 653271 . - . ID=Physo132999.3;Parent=Physo132999;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 653343 653561 . - 0 ID=Physo132999;Parent=Physo132999;rank=2 scaffold_23 . exon 653343 653561 . - . ID=Physo132999.2;Parent=Physo132999;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 653630 653795 . - 0 ID=Physo132999;Parent=Physo132999;rank=1 scaffold_23 . exon 653630 653795 . - . ID=Physo132999.1;Parent=Physo132999;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 654033 655279 . - . ID=Physo133000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230143;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 654033 655279 . - . ID=Physo133000;Parent=Physo133000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 654033 655052 . - . ID=Physo133000.2;Parent=Physo133000;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_23 . CDS 654163 655052 . - 0 ID=Physo133000;Parent=Physo133000;rank=2 scaffold_23 . CDS 655132 655279 . - 0 ID=Physo133000;Parent=Physo133000;rank=1 scaffold_23 . exon 655132 655279 . - . ID=Physo133000.1;Parent=Physo133000;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . repeat_region 666045 666052 . ? . description=dust scaffold_23 . repeat_region 666195 666203 . ? . description=dust scaffold_23 . repeat_region 666953 666960 . ? . description=dust scaffold_23 . repeat_region 669181 669188 . ? . description=dust scaffold_23 ensembl protein_coding_gene 662946 665138 . + . ID=Physo115011;biotype=protein_coding;external_name=estExt_Genewise1.C_230086;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 662946 665138 . + . ID=Physo115011;Parent=Physo115011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 662946 665138 . + . ID=Physo115011.1;Parent=Physo115011;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 662961 665063 . + 0 ID=Physo115011;Parent=Physo115011;rank=1 scaffold_23 ensembl protein_coding_gene 660199 662532 . + . ID=Physo133001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230144;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 660199 662532 . + . ID=Physo133001;Parent=Physo133001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 660199 660352 . + 0 ID=Physo133001;Parent=Physo133001;rank=1 scaffold_23 . exon 660199 660352 . + . ID=Physo133001.1;Parent=Physo133001;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 660424 660646 . + 0 ID=Physo133001;Parent=Physo133001;rank=2 scaffold_23 . exon 660424 660646 . + . ID=Physo133001.2;Parent=Physo133001;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_23 . CDS 660668 661263 . + 0 ID=Physo133001;Parent=Physo133001;rank=3 scaffold_23 . exon 660668 661263 . + . ID=Physo133001.3;Parent=Physo133001;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 661446 661601 . + 0 ID=Physo133001;Parent=Physo133001;rank=4 scaffold_23 . exon 661446 661601 . + . ID=Physo133001.4;Parent=Physo133001;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 661661 662532 . + 0 ID=Physo133001;Parent=Physo133001;rank=5 scaffold_23 . exon 661661 662532 . + . ID=Physo133001.5;Parent=Physo133001;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 ensembl protein_coding_gene 667700 668104 . - . ID=Physo133003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230146;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 667700 668104 . - . ID=Physo133003;Parent=Physo133003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 667700 668104 . - 0 ID=Physo133003;Parent=Physo133003;rank=1 scaffold_23 . exon 667700 668104 . - . ID=Physo133003.1;Parent=Physo133003;constitutive=1;rank=1 scaffold_23 . biological_region 672042 672045 0.999 + . logic_name=eponine scaffold_23 . biological_region 676144 676146 0.999 + . logic_name=eponine scaffold_23 . biological_region 676210 676210 0.999 + . logic_name=eponine scaffold_23 . biological_region 678441 678444 0.999 + . logic_name=eponine scaffold_23 . repeat_region 678688 678737 . + . description=(CTG)n scaffold_23 . repeat_region 678694 678737 . ? . description=trf scaffold_23 . repeat_region 679313 679352 . ? . description=trf scaffold_23 . biological_region 679461 679461 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 672995 675016 . + . ID=Physo133004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230147;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 672995 675016 . + . ID=Physo133004;Parent=Physo133004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 672995 673304 . + 0 ID=Physo133004;Parent=Physo133004;rank=1 scaffold_23 . exon 672995 673304 . + . ID=Physo133004.1;Parent=Physo133004;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . CDS 673371 673678 . + 0 ID=Physo133004;Parent=Physo133004;rank=2 scaffold_23 . exon 673371 673678 . + . ID=Physo133004.2;Parent=Physo133004;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 673746 673943 . + 0 ID=Physo133004;Parent=Physo133004;rank=3 scaffold_23 . exon 673746 673943 . + . ID=Physo133004.3;Parent=Physo133004;constitutive=1;rank=3 scaffold_23 . CDS 674012 674555 . + 0 ID=Physo133004;Parent=Physo133004;rank=4 scaffold_23 . exon 674012 674555 . + . ID=Physo133004.4;Parent=Physo133004;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_23 . CDS 674625 675016 . + 0 ID=Physo133004;Parent=Physo133004;rank=5 scaffold_23 . exon 674625 675016 . + . ID=Physo133004.5;Parent=Physo133004;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 ensembl protein_coding_gene 675035 676337 . - . ID=Physo133005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230148;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 675035 676337 . - . ID=Physo133005;Parent=Physo133005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 675035 675230 . - . ID=Physo133005.5;Parent=Physo133005;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_23 . CDS 675163 675230 . - 0 ID=Physo133005;Parent=Physo133005;rank=5 scaffold_23 . CDS 675304 675668 . - 0 ID=Physo133005;Parent=Physo133005;rank=4 scaffold_23 . exon 675304 675668 . - . ID=Physo133005.4;Parent=Physo133005;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 675748 675801 . - 0 ID=Physo133005;Parent=Physo133005;rank=3 scaffold_23 . exon 675748 675801 . - . ID=Physo133005.3;Parent=Physo133005;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_23 . CDS 675885 676039 . - 0 ID=Physo133005;Parent=Physo133005;rank=2 scaffold_23 . exon 675885 676039 . - . ID=Physo133005.2;Parent=Physo133005;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . CDS 676071 676337 . - 0 ID=Physo133005;Parent=Physo133005;rank=1 scaffold_23 . exon 676071 676337 . - . ID=Physo133005.1;Parent=Physo133005;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 676515 677072 . + . ID=Physo133006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230149;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 676515 677072 . + . ID=Physo133006;Parent=Physo133006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 676515 677072 . + 0 ID=Physo133006;Parent=Physo133006;rank=1 scaffold_23 . exon 676515 677072 . + . ID=Physo133006.1;Parent=Physo133006;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 677419 678945 . - . ID=Physo133007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230150;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 677419 678945 . - . ID=Physo133007;Parent=Physo133007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 677419 678945 . - . ID=Physo133007.1;Parent=Physo133007;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_23 . CDS 677551 678945 . - 0 ID=Physo133007;Parent=Physo133007;rank=1 scaffold_23 ensembl protein_coding_gene 684710 685154 . + . ID=Physo108669;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_230019;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 684710 685154 . + . ID=Physo108669;Parent=Physo108669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 684710 684759 . + . ID=Physo108669.1;Parent=Physo108669;constitutive=1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 684739 684759 . + 0 ID=Physo108669;Parent=Physo108669;rank=1 scaffold_23 . CDS 684846 685154 . + 0 ID=Physo108669;Parent=Physo108669;rank=2 scaffold_23 . exon 684846 685154 . + . ID=Physo108669.2;Parent=Physo108669;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 679739 681217 . + . ID=Physo133008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230151;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 679739 681217 . + . ID=Physo133008;Parent=Physo133008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 679739 681217 . + 0 ID=Physo133008;Parent=Physo133008;rank=1 scaffold_23 . exon 679739 681217 . + . ID=Physo133008.1;Parent=Physo133008;constitutive=1;rank=1 scaffold_23 . repeat_region 690177 690278 . - . description=Polinton-1_PI scaffold_23 . biological_region 691148 691150 0.999 - . logic_name=eponine scaffold_23 . biological_region 693030 693034 0.999 + . logic_name=eponine scaffold_23 . repeat_region 693571 693596 . ? . description=dust scaffold_23 . repeat_region 693571 693596 . ? . description=trf scaffold_23 . biological_region 693712 693714 0.999 + . logic_name=eponine scaffold_23 . biological_region 693727 693729 0.999 - . logic_name=eponine scaffold_23 . biological_region 694567 694574 0.999 + . logic_name=eponine scaffold_23 . biological_region 694645 694649 0.999 - . logic_name=eponine scaffold_23 . biological_region 695777 695779 0.999 + . logic_name=eponine scaffold_23 . repeat_region 699228 699267 . ? . description=dust scaffold_23 . repeat_region 699232 699266 . ? . description=trf scaffold_23 . biological_region 699321 699322 0.999 + . logic_name=eponine scaffold_23 . biological_region 699442 699444 0.999 + . logic_name=eponine scaffold_23 ensembl protein_coding_gene 690546 691320 . - . ID=Physo133010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230153;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 690546 691320 . - . ID=Physo133010;Parent=Physo133010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 690546 690983 . - 0 ID=Physo133010;Parent=Physo133010;rank=2 scaffold_23 . exon 690546 690983 . - . ID=Physo133010.2;Parent=Physo133010;constitutive=1;rank=2 scaffold_23 . CDS 691216 691320 . - 0 ID=Physo133010;Parent=Physo133010;rank=1 scaffold_23 . exon 691216 691320 . - . ID=Physo133010.1;Parent=Physo133010;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 692755 693522 . - . ID=Physo133011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230154;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 692755 693522 . - . ID=Physo133011;Parent=Physo133011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 692755 693522 . - 0 ID=Physo133011;Parent=Physo133011;rank=1 scaffold_23 . exon 692755 693522 . - . ID=Physo133011.1;Parent=Physo133011;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 695683 696063 . + . ID=Physo133012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230155;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 695683 696063 . + . ID=Physo133012;Parent=Physo133012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 695683 696063 . + 0 ID=Physo133012;Parent=Physo133012;rank=1 scaffold_23 . exon 695683 696063 . + . ID=Physo133012.1;Parent=Physo133012;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 697491 698432 . + . ID=Physo133013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230156;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 697491 698432 . + . ID=Physo133013;Parent=Physo133013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 697491 697781 . + 0 ID=Physo133013;Parent=Physo133013;rank=1 scaffold_23 . exon 697491 697781 . + . ID=Physo133013.1;Parent=Physo133013;constitutive=1;rank=1 scaffold_23 . CDS 697850 698108 . + 0 ID=Physo133013;Parent=Physo133013;rank=2 scaffold_23 . exon 697850 698108 . + . ID=Physo133013.2;Parent=Physo133013;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_23 . CDS 698224 698432 . + 0 ID=Physo133013;Parent=Physo133013;rank=3 scaffold_23 . exon 698224 698432 . + . ID=Physo133013.3;Parent=Physo133013;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 ensembl protein_coding_gene 698527 699748 . - . ID=Physo133014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230157;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 698527 699748 . - . ID=Physo133014;Parent=Physo133014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 698527 698832 . - 0 ID=Physo133014;Parent=Physo133014;rank=4 scaffold_23 . exon 698527 698832 . - . ID=Physo133014.4;Parent=Physo133014;constitutive=1;rank=4 scaffold_23 . CDS 698910 699054 . - 0 ID=Physo133014;Parent=Physo133014;rank=3 scaffold_23 . exon 698910 699054 . - . ID=Physo133014.3;Parent=Physo133014;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 699115 699224 . - 0 ID=Physo133014;Parent=Physo133014;rank=2 scaffold_23 . exon 699115 699224 . - . ID=Physo133014.2;Parent=Physo133014;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . CDS 699304 699711 . - 0 ID=Physo133014;Parent=Physo133014;rank=1 scaffold_23 . exon 699304 699748 . - . ID=Physo133014.1;Parent=Physo133014;constitutive=1;ensembl_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 701376 701774 . + . ID=Physo133015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230158;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 701376 701774 . + . ID=Physo133015;Parent=Physo133015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 701376 701774 . + 0 ID=Physo133015;Parent=Physo133015;rank=1 scaffold_23 . exon 701376 701774 . + . ID=Physo133015.1;Parent=Physo133015;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 702425 702823 . - . ID=Physo133016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230159;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 702425 702823 . - . ID=Physo133016;Parent=Physo133016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 702425 702823 . - 0 ID=Physo133016;Parent=Physo133016;rank=1 scaffold_23 . exon 702425 702823 . - . ID=Physo133016.1;Parent=Physo133016;constitutive=1;rank=1 scaffold_23 ensembl protein_coding_gene 706588 706998 . - . ID=Physo133017;biotype=protein_coding;description=PsAvh227 [Source:UniProtKB/TrEMBL%3BAcc:E0W4W5];external_name=estExt_fgenesh1_pg.C_230160;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 706588 706998 . - . ID=Physo133017;Parent=Physo133017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 706588 706998 . - 0 ID=Physo133017;Parent=Physo133017;rank=1 scaffold_23 . exon 706588 706998 . - . ID=Physo133017.1;Parent=Physo133017;constitutive=1;rank=1 scaffold_23 . biological_region 709989 709992 0.999 + . logic_name=eponine scaffold_23 . repeat_region 717084 717122 . ? . description=trf scaffold_23 . biological_region 718956 718957 0.999 + . logic_name=eponine scaffold_23 . repeat_region 719447 719502 . ? . description=trf scaffold_23 ensembl protein_coding_gene 710148 710861 . + . ID=Physo133018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230161;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 710148 710861 . + . ID=Physo133018;Parent=Physo133018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 710148 710380 . + 0 ID=Physo133018;Parent=Physo133018;rank=1 scaffold_23 . exon 710148 710380 . + . ID=Physo133018.1;Parent=Physo133018;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 710477 710861 . + 0 ID=Physo133018;Parent=Physo133018;rank=2 scaffold_23 . exon 710477 710861 . + . ID=Physo133018.2;Parent=Physo133018;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 ensembl protein_coding_gene 712504 716997 . - . ID=Physo133019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230162;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 712504 716997 . - . ID=Physo133019;Parent=Physo133019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 712504 713592 . - 0 ID=Physo133019;Parent=Physo133019;rank=5 scaffold_23 . exon 712504 713592 . - . ID=Physo133019.5;Parent=Physo133019;constitutive=1;rank=5 scaffold_23 . CDS 713843 714121 . - 0 ID=Physo133019;Parent=Physo133019;rank=4 scaffold_23 . exon 713843 714121 . - . ID=Physo133019.4;Parent=Physo133019;constitutive=1;rank=4 scaffold_23 . CDS 714534 715516 . - 0 ID=Physo133019;Parent=Physo133019;rank=3 scaffold_23 . exon 714534 715516 . - . ID=Physo133019.3;Parent=Physo133019;constitutive=1;ensembl_phase=1;rank=3 scaffold_23 . CDS 715864 716613 . - 0 ID=Physo133019;Parent=Physo133019;rank=2 scaffold_23 . exon 715864 716613 . - . ID=Physo133019.2;Parent=Physo133019;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 716640 716997 . - 0 ID=Physo133019;Parent=Physo133019;rank=1 scaffold_23 . exon 716640 716997 . - . ID=Physo133019.1;Parent=Physo133019;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 717447 720693 . + . ID=Physo133020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230163;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 717447 720693 . + . ID=Physo133020;Parent=Physo133020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 717447 717463 . + 0 ID=Physo133020;Parent=Physo133020;rank=1 scaffold_23 . exon 717447 717463 . + . ID=Physo133020.1;Parent=Physo133020;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 717533 718270 . + 0 ID=Physo133020;Parent=Physo133020;rank=2 scaffold_23 . exon 717533 718270 . + . ID=Physo133020.2;Parent=Physo133020;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_23 . CDS 718463 718501 . + 0 ID=Physo133020;Parent=Physo133020;rank=3 scaffold_23 . exon 718463 718501 . + . ID=Physo133020.3;Parent=Physo133020;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_23 . CDS 718653 720556 . + 0 ID=Physo133020;Parent=Physo133020;rank=4 scaffold_23 . exon 718653 720556 . + . ID=Physo133020.4;Parent=Physo133020;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 720632 720693 . + 0 ID=Physo133020;Parent=Physo133020;rank=5 scaffold_23 . repeat_region 722630 722679 . ? . description=dust scaffold_23 . repeat_region 725713 725736 . ? . description=dust scaffold_23 . repeat_region 727720 727743 . ? . description=dust scaffold_23 . repeat_region 727760 727769 . ? . description=dust scaffold_23 . repeat_region 728300 728307 . ? . description=dust scaffold_23 . exon 720632 720693 . + . ID=Physo133020.5;Parent=Physo133020;constitutive=1;ensembl_phase=1;rank=5 scaffold_23 ensembl protein_coding_gene 728506 730442 . - . ID=Physo133021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230164;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 728506 730442 . - . ID=Physo133021;Parent=Physo133021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 728506 728567 . - 0 ID=Physo133021;Parent=Physo133021;rank=2 scaffold_23 . exon 728506 728567 . - . ID=Physo133021.2;Parent=Physo133021;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 728645 730442 . - 0 ID=Physo133021;Parent=Physo133021;rank=1 scaffold_23 . exon 728645 730442 . - . ID=Physo133021.1;Parent=Physo133021;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 . biological_region 731986 731989 0.999 - . logic_name=eponine scaffold_23 . biological_region 733315 733316 0.999 + . logic_name=eponine scaffold_23 . repeat_region 734317 734454 . ? . description=trf scaffold_23 . repeat_region 735381 735434 . ? . description=trf scaffold_23 . repeat_region 735581 735627 . ? . description=trf scaffold_23 . biological_region 736779 736781 0.999 - . logic_name=eponine scaffold_23 ensembl protein_coding_gene 731234 731830 . + . ID=Physo133022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230165;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 731234 731830 . + . ID=Physo133022;Parent=Physo133022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 731234 731515 . + 0 ID=Physo133022;Parent=Physo133022;rank=1 scaffold_23 . exon 731234 731515 . + . ID=Physo133022.1;Parent=Physo133022;constitutive=1;rank=1 scaffold_23 . CDS 731570 731830 . + 0 ID=Physo133022;Parent=Physo133022;rank=2 scaffold_23 . exon 731570 731830 . + . ID=Physo133022.2;Parent=Physo133022;constitutive=1;rank=2 scaffold_23 ensembl protein_coding_gene 732063 734006 . - . ID=Physo133023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230166;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 732063 734006 . - . ID=Physo133023;Parent=Physo133023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 732063 732081 . - 0 ID=Physo133023;Parent=Physo133023;rank=4 scaffold_23 . exon 732063 732081 . - . ID=Physo133023.4;Parent=Physo133023;constitutive=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 732131 732394 . - 0 ID=Physo133023;Parent=Physo133023;rank=3 scaffold_23 . exon 732131 732394 . - . ID=Physo133023.3;Parent=Physo133023;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_23 . CDS 732573 732788 . - 0 ID=Physo133023;Parent=Physo133023;rank=2 scaffold_23 . exon 732573 732788 . - . ID=Physo133023.2;Parent=Physo133023;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_23 . CDS 732994 734006 . - 0 ID=Physo133023;Parent=Physo133023;rank=1 scaffold_23 . exon 732994 734006 . - . ID=Physo133023.1;Parent=Physo133023;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . repeat_region 740295 740318 . ? . description=dust scaffold_23 . repeat_region 742341 742350 . ? . description=dust scaffold_23 . repeat_region 742879 742886 . ? . description=dust scaffold_23 ensembl protein_coding_gene 743085 745021 . - . ID=Physo133024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230167;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 743085 745021 . - . ID=Physo133024;Parent=Physo133024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 743085 743146 . - 0 ID=Physo133024;Parent=Physo133024;rank=2 scaffold_23 . exon 743085 743146 . - . ID=Physo133024.2;Parent=Physo133024;constitutive=1;ensembl_phase=1;rank=2 scaffold_23 . CDS 743224 745021 . - 0 ID=Physo133024;Parent=Physo133024;rank=1 scaffold_23 . exon 743224 745021 . - . ID=Physo133024.1;Parent=Physo133024;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_23 ensembl protein_coding_gene 745844 748869 . + . ID=Physo156622;biotype=protein_coding;external_name=C_scaffold_23000023;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 745844 748869 . + . ID=Physo156622;Parent=Physo156622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 745844 746194 . + 0 ID=Physo156622;Parent=Physo156622;rank=1 scaffold_23 . exon 745844 746194 . + . ID=Physo156622.1;Parent=Physo156622;constitutive=1;rank=1 scaffold_23 . CDS 746240 746805 . + 0 ID=Physo156622;Parent=Physo156622;rank=2 scaffold_23 . exon 746240 746805 . + . ID=Physo156622.2;Parent=Physo156622;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . CDS 747135 747212 . + 0 ID=Physo156622;Parent=Physo156622;rank=3 scaffold_23 . exon 747135 747212 . + . ID=Physo156622.3;Parent=Physo156622;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_23 . CDS 747283 747589 . + 0 ID=Physo156622;Parent=Physo156622;rank=4 scaffold_23 . exon 747283 747589 . + . ID=Physo156622.4;Parent=Physo156622;constitutive=1;ensembl_phase=2;rank=4 scaffold_23 . CDS 747655 747747 . + 0 ID=Physo156622;Parent=Physo156622;rank=5 scaffold_23 . exon 747655 747747 . + . ID=Physo156622.5;Parent=Physo156622;constitutive=1;rank=5 scaffold_23 . CDS 747819 747889 . + 0 ID=Physo156622;Parent=Physo156622;rank=6 scaffold_23 . exon 747819 747889 . + . ID=Physo156622.6;Parent=Physo156622;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_23 . CDS 748260 748441 . + 0 ID=Physo156622;Parent=Physo156622;rank=7 scaffold_23 . exon 748260 748441 . + . ID=Physo156622.7;Parent=Physo156622;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_23 . CDS 748577 748869 . + 0 ID=Physo156622;Parent=Physo156622;rank=8 scaffold_23 . exon 748577 748869 . + . ID=Physo156622.8;Parent=Physo156622;constitutive=1;ensembl_phase=1;rank=8 scaffold_23 . biological_region 751819 751820 0.999 - . logic_name=eponine scaffold_23 . biological_region 754914 754919 0.999 - . logic_name=eponine scaffold_23 . biological_region 756248 756249 0.999 + . logic_name=eponine scaffold_23 . repeat_region 757250 757387 . ? . description=trf scaffold_23 . repeat_region 758314 758367 . ? . description=trf scaffold_23 . repeat_region 758514 758560 . ? . description=trf scaffold_23 ensembl protein_coding_gene 751561 756939 . - . ID=Physo133026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230169;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 751561 756939 . - . ID=Physo133026;Parent=Physo133026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 751561 755851 . - 0 ID=Physo133026;Parent=Physo133026;rank=2 scaffold_23 . exon 751561 755851 . - . ID=Physo133026.2;Parent=Physo133026;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . CDS 755927 756939 . - 0 ID=Physo133026;Parent=Physo133026;rank=1 scaffold_23 . exon 755927 756939 . - . ID=Physo133026.1;Parent=Physo133026;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . repeat_region 759678 759689 . ? . description=dust scaffold_23 . repeat_region 766316 766335 . ? . description=dust scaffold_23 . repeat_region 766809 766872 . ? . description=dust scaffold_23 . repeat_region 766876 766934 . ? . description=dust scaffold_23 ensembl protein_coding_gene 769245 771598 . + . ID=Physo115022;biotype=protein_coding;external_name=estExt_Genewise1.C_230097;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 769245 771598 . + . ID=Physo115022;Parent=Physo115022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . exon 769245 769652 . + . ID=Physo115022.1;Parent=Physo115022;constitutive=1;ensembl_phase=-1;rank=1 scaffold_23 . CDS 769494 769652 . + 0 ID=Physo115022;Parent=Physo115022;rank=1 scaffold_23 . CDS 769698 769936 . + 0 ID=Physo115022;Parent=Physo115022;rank=2 scaffold_23 . CDS 770174 770360 . + 0 ID=Physo115022;Parent=Physo115022;rank=3 scaffold_23 . CDS 770434 770469 . + 0 ID=Physo115022;Parent=Physo115022;rank=4 scaffold_23 . CDS 770558 771598 . + 0 ID=Physo115022;Parent=Physo115022;rank=5 scaffold_23 ensembl protein_coding_gene 761869 764278 . + . ID=Physo133027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230170;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 761869 764278 . + . ID=Physo133027;Parent=Physo133027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 761869 762054 . + 0 ID=Physo133027;Parent=Physo133027;rank=1 scaffold_23 . exon 761869 762054 . + . ID=Physo133027.1;Parent=Physo133027;constitutive=1;rank=1 scaffold_23 . CDS 762149 762225 . + 0 ID=Physo133027;Parent=Physo133027;rank=2 scaffold_23 . exon 762149 762225 . + . ID=Physo133027.2;Parent=Physo133027;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . CDS 762447 762547 . + 0 ID=Physo133027;Parent=Physo133027;rank=3 scaffold_23 . exon 762447 762547 . + . ID=Physo133027.3;Parent=Physo133027;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 762796 762839 . + 0 ID=Physo133027;Parent=Physo133027;rank=4 scaffold_23 . exon 762796 762839 . + . ID=Physo133027.4;Parent=Physo133027;constitutive=1;ensembl_phase=1;rank=4 scaffold_23 . CDS 762926 763083 . + 0 ID=Physo133027;Parent=Physo133027;rank=5 scaffold_23 . exon 762926 763083 . + . ID=Physo133027.5;Parent=Physo133027;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_23 . CDS 763571 763961 . + 0 ID=Physo133027;Parent=Physo133027;rank=6 scaffold_23 . exon 763571 763961 . + . ID=Physo133027.6;Parent=Physo133027;constitutive=1;ensembl_phase=2;rank=6 scaffold_23 . CDS 764039 764278 . + 0 ID=Physo133027;Parent=Physo133027;rank=7 scaffold_23 . exon 764039 764278 . + . ID=Physo133027.7;Parent=Physo133027;constitutive=1;rank=7 scaffold_23 ensembl protein_coding_gene 764520 765971 . - . ID=Physo133028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230171;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 764520 765971 . - . ID=Physo133028;Parent=Physo133028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 764520 764548 . - 0 ID=Physo133028;Parent=Physo133028;rank=6 scaffold_23 . exon 764520 764548 . - . ID=Physo133028.6;Parent=Physo133028;constitutive=1;ensembl_phase=1;rank=6 scaffold_23 . CDS 764595 764772 . - 0 ID=Physo133028;Parent=Physo133028;rank=5 scaffold_23 . exon 764595 764772 . - . ID=Physo133028.5;Parent=Physo133028;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_23 . CDS 764836 765006 . - 0 ID=Physo133028;Parent=Physo133028;rank=4 scaffold_23 . exon 764836 765006 . - . ID=Physo133028.4;Parent=Physo133028;constitutive=1;rank=4 scaffold_23 . CDS 765028 765229 . - 0 ID=Physo133028;Parent=Physo133028;rank=3 scaffold_23 . exon 765028 765229 . - . ID=Physo133028.3;Parent=Physo133028;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . CDS 765292 765380 . - 0 ID=Physo133028;Parent=Physo133028;rank=2 scaffold_23 . exon 765292 765380 . - . ID=Physo133028.2;Parent=Physo133028;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . CDS 765480 765614 . - 0 ID=Physo133028;Parent=Physo133028;rank=1 scaffold_23 . exon 765480 765971 . - . ID=Physo133028.1;Parent=Physo133028;constitutive=1;ensembl_phase=-1;rank=1 scaffold_23 ensembl protein_coding_gene 766291 768107 . + . ID=Physo133029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230172;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 766291 768107 . + . ID=Physo133029;Parent=Physo133029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 766291 767258 . + 0 ID=Physo133029;Parent=Physo133029;rank=1 scaffold_23 . exon 766291 767258 . + . ID=Physo133029.1;Parent=Physo133029;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_23 . CDS 767294 768107 . + 0 ID=Physo133029;Parent=Physo133029;rank=2 scaffold_23 . exon 767294 768107 . + . ID=Physo133029.2;Parent=Physo133029;constitutive=1;ensembl_phase=2;rank=2 scaffold_23 . exon 769698 769936 . + . ID=Physo115022.2;Parent=Physo115022;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_23 . exon 770174 770360 . + . ID=Physo115022.3;Parent=Physo115022;constitutive=1;ensembl_phase=2;rank=3 scaffold_23 . exon 770434 770469 . + . ID=Physo115022.4;Parent=Physo115022;constitutive=1;rank=4 scaffold_23 . exon 770558 771598 . + . ID=Physo115022.5;Parent=Physo115022;constitutive=1;rank=5 scaffold_23 . repeat_region 779611 780476 . ? . description=dust scaffold_23 . repeat_region 781296 783677 . ? . description=dust scaffold_23 . repeat_region 783874 783896 . ? . description=dust scaffold_23 . repeat_region 784424 784432 . ? . description=dust scaffold_23 . repeat_region 784593 798521 . ? . description=dust scaffold_23 . repeat_region 798852 798882 . ? . description=trf scaffold_23 ensembl protein_coding_gene 799555 800197 . - . ID=Physo133031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_230174;logic_name=jgi_physo1_1 scaffold_23 ensembl transcript 799555 800197 . - . ID=Physo133031;Parent=Physo133031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_23 . CDS 799555 799668 . - 0 ID=Physo133031;Parent=Physo133031;rank=2 scaffold_23 . exon 799555 799668 . - . ID=Physo133031.2;Parent=Physo133031;constitutive=1;rank=2 scaffold_23 . CDS 799694 800197 . - 0 ID=Physo133031;Parent=Physo133031;rank=1 scaffold_23 . biological_region 799731 799732 0.999 + . logic_name=eponine scaffold_23 . repeat_region 802356 802369 . ? . description=dust scaffold_23 . biological_region 803512 803519 0.999 + . logic_name=eponine scaffold_23 . biological_region 803748 803753 0.999 - . logic_name=eponine scaffold_23 . biological_region 805366 805369 0.999 + . logic_name=eponine scaffold_23 . repeat_region 805511 805519 . ? . description=dust scaffold_23 . exon 799694 800197 . - . ID=Physo133031.1;Parent=Physo133031;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_21 1 856768 scaffold_21 . biological_region 2396 2399 0.999 + . logic_name=eponine scaffold_21 . repeat_region 3202 19384 . ? . description=dust scaffold_21 ensembl protein_coding_gene 1326 2249 . - . ID=Physo132441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210001;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 1326 2249 . - . ID=Physo132441;Parent=Physo132441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 1326 2249 . - 0 ID=Physo132441;Parent=Physo132441;rank=1 scaffold_21 . exon 1326 2249 . - . ID=Physo132441.1;Parent=Physo132441;constitutive=1;rank=1 scaffold_21 . biological_region 23666 23667 0.999 + . logic_name=eponine scaffold_21 . biological_region 24515 24519 0.999 + . logic_name=eponine scaffold_21 . biological_region 25196 25199 0.999 - . logic_name=eponine scaffold_21 . repeat_region 26031 26151 . ? . description=dust scaffold_21 . repeat_region 26031 26151 . ? . description=trf scaffold_21 . repeat_region 26031 26166 . + . description=(TTC)n scaffold_21 . biological_region 27224 27227 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 21563 23165 . - . ID=Physo108627;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_210001;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 21563 23165 . - . ID=Physo108627;Parent=Physo108627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 21563 21740 . - 0 ID=Physo108627;Parent=Physo108627;rank=5 scaffold_21 . exon 21563 21740 . - . ID=Physo108627.5;Parent=Physo108627;constitutive=1;ensembl_phase=2;rank=5 scaffold_21 . CDS 21811 21873 . - 0 ID=Physo108627;Parent=Physo108627;rank=4 scaffold_21 . exon 21811 21873 . - . ID=Physo108627.4;Parent=Physo108627;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . CDS 21947 22131 . - 0 ID=Physo108627;Parent=Physo108627;rank=3 scaffold_21 . exon 21947 22131 . - . ID=Physo108627.3;Parent=Physo108627;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_21 . CDS 22202 22262 . - 0 ID=Physo108627;Parent=Physo108627;rank=2 scaffold_21 . exon 22202 22262 . - . ID=Physo108627.2;Parent=Physo108627;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 22330 23165 . - 0 ID=Physo108627;Parent=Physo108627;rank=1 scaffold_21 . exon 22330 23165 . - . ID=Physo108627.1;Parent=Physo108627;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 23405 25624 . - . ID=Physo132443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210003;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 23405 25624 . - . ID=Physo132443;Parent=Physo132443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 23405 25624 . - 0 ID=Physo132443;Parent=Physo132443;rank=1 scaffold_21 . exon 23405 25624 . - . ID=Physo132443.1;Parent=Physo132443;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 26027 27283 . - . ID=Physo132444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210004;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 26027 27283 . - . ID=Physo132444;Parent=Physo132444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 26027 26174 . - 0 ID=Physo132444;Parent=Physo132444;rank=3 scaffold_21 . exon 26027 26174 . - . ID=Physo132444.3;Parent=Physo132444;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 26372 26455 . - 0 ID=Physo132444;Parent=Physo132444;rank=2 scaffold_21 . exon 26372 26455 . - . ID=Physo132444.2;Parent=Physo132444;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 26925 27283 . - 0 ID=Physo132444;Parent=Physo132444;rank=1 scaffold_21 . exon 26925 27283 . - . ID=Physo132444.1;Parent=Physo132444;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 36517 37615 . + . ID=Physo108628;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_210002;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 36517 37615 . + . ID=Physo108628;Parent=Physo108628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 36517 36624 . + . ID=Physo108628.1;Parent=Physo108628;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 36567 36624 . + 0 ID=Physo108628;Parent=Physo108628;rank=1 scaffold_21 . CDS 36838 37433 . + 0 ID=Physo108628;Parent=Physo108628;rank=2 scaffold_21 . exon 36838 37615 . + . ID=Physo108628.2;Parent=Physo108628;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_21 ensembl protein_coding_gene 31827 32839 . - . ID=Physo132445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210005;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 31827 32839 . - . ID=Physo132445;Parent=Physo132445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 31827 31847 . - 0 ID=Physo132445;Parent=Physo132445;rank=2 scaffold_21 . exon 31827 31847 . - . ID=Physo132445.2;Parent=Physo132445;constitutive=1;rank=2 scaffold_21 . CDS 31883 32839 . - 0 ID=Physo132445;Parent=Physo132445;rank=1 scaffold_21 . exon 31883 32839 . - . ID=Physo132445.1;Parent=Physo132445;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 33336 35591 . + . ID=Physo132446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210006;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 33336 35591 . + . ID=Physo132446;Parent=Physo132446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 33336 35591 . + 0 ID=Physo132446;Parent=Physo132446;rank=1 scaffold_21 . exon 33336 35591 . + . ID=Physo132446.1;Parent=Physo132446;constitutive=1;rank=1 scaffold_21 . repeat_region 40581 40680 . ? . description=dust scaffold_21 . repeat_region 43124 43221 . ? . description=trf scaffold_21 . repeat_region 46479 46756 . ? . description=trf scaffold_21 . biological_region 46739 46741 0.999 + . logic_name=eponine scaffold_21 . biological_region 46808 46810 0.999 + . logic_name=eponine scaffold_21 . biological_region 46835 46835 0.999 - . logic_name=eponine scaffold_21 . biological_region 46873 46876 0.999 - . logic_name=eponine scaffold_21 . repeat_region 47407 49785 . + . description=GypsyPi-1c_I-int scaffold_21 . biological_region 48894 48895 0.999 - . logic_name=eponine scaffold_21 . biological_region 48926 48927 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 45975 50097 . + . ID=Physo132448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210008;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 45975 50097 . + . ID=Physo132448;Parent=Physo132448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 45975 46982 . + 0 ID=Physo132448;Parent=Physo132448;rank=1 scaffold_21 . exon 45975 46982 . + . ID=Physo132448.1;Parent=Physo132448;constitutive=1;rank=1 scaffold_21 . CDS 47051 49171 . + 0 ID=Physo132448;Parent=Physo132448;rank=2 scaffold_21 . exon 47051 49171 . + . ID=Physo132448.2;Parent=Physo132448;constitutive=1;rank=2 scaffold_21 . CDS 49267 49502 . + 0 ID=Physo132448;Parent=Physo132448;rank=3 scaffold_21 . exon 49267 49502 . + . ID=Physo132448.3;Parent=Physo132448;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_21 . CDS 49529 50050 . + 0 ID=Physo132448;Parent=Physo132448;rank=4 scaffold_21 . exon 49529 50050 . + . ID=Physo132448.4;Parent=Physo132448;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . CDS 50091 50097 . + 0 ID=Physo132448;Parent=Physo132448;rank=5 scaffold_21 . exon 50091 50097 . + . ID=Physo132448.5;Parent=Physo132448;constitutive=1;ensembl_phase=2;rank=5 scaffold_21 ensembl protein_coding_gene 50350 51853 . - . ID=Physo132449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210009;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 50350 51853 . - . ID=Physo132449;Parent=Physo132449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 50350 50664 . - 0 ID=Physo132449;Parent=Physo132449;rank=2 scaffold_21 . exon 50350 50664 . - . ID=Physo132449.2;Parent=Physo132449;constitutive=1;rank=2 scaffold_21 . CDS 50828 51853 . - 0 ID=Physo132449;Parent=Physo132449;rank=1 scaffold_21 . exon 50828 51853 . - . ID=Physo132449.1;Parent=Physo132449;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 52517 53347 . + . ID=Physo132450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210010;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 52517 53347 . + . ID=Physo132450;Parent=Physo132450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 52517 52763 . + 0 ID=Physo132450;Parent=Physo132450;rank=1 scaffold_21 . exon 52517 52763 . + . ID=Physo132450.1;Parent=Physo132450;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 52839 53347 . + 0 ID=Physo132450;Parent=Physo132450;rank=2 scaffold_21 . exon 52839 53347 . + . ID=Physo132450.2;Parent=Physo132450;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . repeat_region 62342 62351 . ? . description=dust scaffold_21 . repeat_region 62392 62399 . ? . description=dust scaffold_21 . biological_region 65341 65344 0.999 - . logic_name=eponine scaffold_21 . repeat_region 65451 65459 . ? . description=dust scaffold_21 . repeat_region 65598 65647 . ? . description=dust scaffold_21 . biological_region 66167 66167 0.999 - . logic_name=eponine scaffold_21 . repeat_region 68440 68447 . ? . description=dust scaffold_21 ensembl protein_coding_gene 64406 65428 . - . ID=Physo132451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210011;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 64406 65428 . - . ID=Physo132451;Parent=Physo132451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 64406 65428 . - . ID=Physo132451.1;Parent=Physo132451;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . CDS 64478 65428 . - 0 ID=Physo132451;Parent=Physo132451;rank=1 scaffold_21 ensembl protein_coding_gene 66697 67576 . - . ID=Physo132452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210012;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 66697 67576 . - . ID=Physo132452;Parent=Physo132452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 66697 66774 . - 0 ID=Physo132452;Parent=Physo132452;rank=5 scaffold_21 . exon 66697 66774 . - . ID=Physo132452.5;Parent=Physo132452;constitutive=1;rank=5 scaffold_21 . CDS 66828 67104 . - 0 ID=Physo132452;Parent=Physo132452;rank=4 scaffold_21 . exon 66828 67104 . - . ID=Physo132452.4;Parent=Physo132452;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 67170 67203 . - 0 ID=Physo132452;Parent=Physo132452;rank=3 scaffold_21 . exon 67170 67203 . - . ID=Physo132452.3;Parent=Physo132452;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . CDS 67270 67464 . - 0 ID=Physo132452;Parent=Physo132452;rank=2 scaffold_21 . exon 67270 67464 . - . ID=Physo132452.2;Parent=Physo132452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 67546 67576 . - 0 ID=Physo132452;Parent=Physo132452;rank=1 scaffold_21 . exon 67546 67576 . - . ID=Physo132452.1;Parent=Physo132452;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . repeat_region 77777 77812 . ? . description=trf scaffold_21 . repeat_region 77778 77819 . ? . description=trf scaffold_21 ensembl protein_coding_gene 70858 71676 . + . ID=Physo132453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210013;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 70858 71676 . + . ID=Physo132453;Parent=Physo132453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 70858 71676 . + 0 ID=Physo132453;Parent=Physo132453;rank=1 scaffold_21 . exon 70858 71676 . + . ID=Physo132453.1;Parent=Physo132453;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 77515 78766 . + . ID=Physo132454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210014;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 77515 78766 . + . ID=Physo132454;Parent=Physo132454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 77515 78591 . + 0 ID=Physo132454;Parent=Physo132454;rank=1 scaffold_21 . exon 77515 78591 . + . ID=Physo132454.1;Parent=Physo132454;constitutive=1;rank=1 scaffold_21 . CDS 78623 78766 . + 0 ID=Physo132454;Parent=Physo132454;rank=2 scaffold_21 . exon 78623 78766 . + . ID=Physo132454.2;Parent=Physo132454;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 78783 80026 . - . ID=Physo132455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210015;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 78783 80026 . - . ID=Physo132455;Parent=Physo132455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 78783 79053 . - . ID=Physo132455.4;Parent=Physo132455;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_21 . CDS 78947 79053 . - 0 ID=Physo132455;Parent=Physo132455;rank=4 scaffold_21 . CDS 79180 79267 . - 0 ID=Physo132455;Parent=Physo132455;rank=3 scaffold_21 . exon 79180 79267 . - . ID=Physo132455.3;Parent=Physo132455;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_21 . CDS 79301 79546 . - 0 ID=Physo132455;Parent=Physo132455;rank=2 scaffold_21 . exon 79301 79546 . - . ID=Physo132455.2;Parent=Physo132455;constitutive=1;rank=2 scaffold_21 . CDS 79619 80026 . - 0 ID=Physo132455;Parent=Physo132455;rank=1 scaffold_21 . exon 79619 80026 . - . ID=Physo132455.1;Parent=Physo132455;constitutive=1;rank=1 scaffold_21 . biological_region 79942 79945 0.999 + . logic_name=eponine scaffold_21 . biological_region 79944 79946 0.999 - . logic_name=eponine scaffold_21 . biological_region 80395 80398 0.999 + . logic_name=eponine scaffold_21 . biological_region 80436 80437 0.999 - . logic_name=eponine scaffold_21 . biological_region 80568 80573 0.999 + . logic_name=eponine scaffold_21 . biological_region 80578 80579 0.999 - . logic_name=eponine scaffold_21 . repeat_region 80952 81029 . ? . description=dust scaffold_21 . repeat_region 80956 81031 . + . description=(CTG)n scaffold_21 . repeat_region 85294 85369 . + . description=(CAG)n scaffold_21 . repeat_region 85295 85350 . ? . description=dust scaffold_21 . biological_region 85747 85748 0.999 + . logic_name=eponine scaffold_21 . biological_region 85753 85758 0.999 - . logic_name=eponine scaffold_21 . biological_region 85889 85890 0.999 + . logic_name=eponine scaffold_21 . biological_region 85928 85931 0.999 - . logic_name=eponine scaffold_21 . biological_region 86454 86458 0.999 + . logic_name=eponine scaffold_21 . biological_region 86486 86488 0.999 - . logic_name=eponine scaffold_21 . biological_region 88330 88332 0.999 + . logic_name=eponine scaffold_21 . biological_region 89468 89472 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 80257 81681 . + . ID=Physo132456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210016;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 80257 81681 . + . ID=Physo132456;Parent=Physo132456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 80257 81681 . + 0 ID=Physo132456;Parent=Physo132456;rank=1 scaffold_21 . exon 80257 81681 . + . ID=Physo132456.1;Parent=Physo132456;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 82927 84538 . + . ID=Physo132457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210017;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 82927 84538 . + . ID=Physo132457;Parent=Physo132457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 82927 83054 . + . ID=Physo132457.1;Parent=Physo132457;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 82949 83054 . + 0 ID=Physo132457;Parent=Physo132457;rank=1 scaffold_21 . CDS 83124 84538 . + 0 ID=Physo132457;Parent=Physo132457;rank=2 scaffold_21 . exon 83124 84538 . + . ID=Physo132457.2;Parent=Physo132457;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 ensembl protein_coding_gene 84623 86068 . - . ID=Physo132458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210018;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 84623 86068 . - . ID=Physo132458;Parent=Physo132458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 84623 86068 . - 0 ID=Physo132458;Parent=Physo132458;rank=1 scaffold_21 . exon 84623 86068 . - . ID=Physo132458.1;Parent=Physo132458;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 86281 88162 . + . ID=Physo132459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210019;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 86281 88162 . + . ID=Physo132459;Parent=Physo132459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 86281 86865 . + 0 ID=Physo132459;Parent=Physo132459;rank=1 scaffold_21 . exon 86281 86865 . + . ID=Physo132459.1;Parent=Physo132459;constitutive=1;rank=1 scaffold_21 . CDS 86930 88162 . + 0 ID=Physo132459;Parent=Physo132459;rank=2 scaffold_21 . exon 86930 88162 . + . ID=Physo132459.2;Parent=Physo132459;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 88233 93779 . - . ID=Physo132460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210020;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 88233 93779 . - . ID=Physo132460;Parent=Physo132460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 88233 93779 . - 0 ID=Physo132460;Parent=Physo132460;rank=1 scaffold_21 . exon 88233 93779 . - . ID=Physo132460.1;Parent=Physo132460;constitutive=1;rank=1 scaffold_21 . repeat_region 93419 93438 . ? . description=trf scaffold_21 ensembl protein_coding_gene 94600 95552 . + . ID=Physo132461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210021;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 94600 95552 . + . ID=Physo132461;Parent=Physo132461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 94600 94658 . + 0 ID=Physo132461;Parent=Physo132461;rank=1 scaffold_21 . exon 94600 94658 . + . ID=Physo132461.1;Parent=Physo132461;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 94778 95552 . + 0 ID=Physo132461;Parent=Physo132461;rank=2 scaffold_21 . exon 94778 95552 . + . ID=Physo132461.2;Parent=Physo132461;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 95561 96479 . - . ID=Physo132462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210022;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 95561 96479 . - . ID=Physo132462;Parent=Physo132462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 95561 95765 . - . ID=Physo132462.3;Parent=Physo132462;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_21 . CDS 95605 95765 . - 0 ID=Physo132462;Parent=Physo132462;rank=3 scaffold_21 . CDS 95835 95973 . - 0 ID=Physo132462;Parent=Physo132462;rank=2 scaffold_21 . exon 95835 95973 . - . ID=Physo132462.2;Parent=Physo132462;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 96054 96479 . - 0 ID=Physo132462;Parent=Physo132462;rank=1 scaffold_21 . exon 96054 96479 . - . ID=Physo132462.1;Parent=Physo132462;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 97845 99659 . + . ID=Physo132463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210023;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 97845 99659 . + . ID=Physo132463;Parent=Physo132463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 97845 99659 . + 0 ID=Physo132463;Parent=Physo132463;rank=1 scaffold_21 . exon 97845 99659 . + . ID=Physo132463.1;Parent=Physo132463;constitutive=1;rank=1 scaffold_21 . biological_region 99986 99991 0.999 - . logic_name=eponine scaffold_21 . biological_region 100044 100044 0.999 + . logic_name=eponine scaffold_21 . biological_region 100574 100581 0.999 + . logic_name=eponine scaffold_21 . biological_region 101154 101158 0.999 - . logic_name=eponine scaffold_21 . biological_region 101700 101701 0.999 + . logic_name=eponine scaffold_21 . biological_region 104641 104642 0.999 - . logic_name=eponine scaffold_21 . biological_region 104734 104737 0.999 - . logic_name=eponine scaffold_21 . biological_region 104750 104757 0.999 - . logic_name=eponine scaffold_21 . repeat_region 104764 104820 . ? . description=dust scaffold_21 . biological_region 104789 104792 0.999 + . logic_name=eponine scaffold_21 . repeat_region 108329 108336 . ? . description=dust scaffold_21 . biological_region 109153 109159 0.999 - . logic_name=eponine scaffold_21 . biological_region 109180 109181 0.999 - . logic_name=eponine scaffold_21 . biological_region 109216 109220 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 99754 100383 . - . ID=Physo132464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210024;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 99754 100383 . - . ID=Physo132464;Parent=Physo132464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 99754 100383 . - 0 ID=Physo132464;Parent=Physo132464;rank=1 scaffold_21 . exon 99754 100383 . - . ID=Physo132464.1;Parent=Physo132464;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 101631 102522 . - . ID=Physo132465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210025;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 101631 102522 . - . ID=Physo132465;Parent=Physo132465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 101631 102354 . - 0 ID=Physo132465;Parent=Physo132465;rank=2 scaffold_21 . exon 101631 102354 . - . ID=Physo132465.2;Parent=Physo132465;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 102383 102522 . - 0 ID=Physo132465;Parent=Physo132465;rank=1 scaffold_21 . exon 102383 102522 . - . ID=Physo132465.1;Parent=Physo132465;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 104063 104938 . - . ID=Physo132466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210026;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 104063 104938 . - . ID=Physo132466;Parent=Physo132466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 104063 104938 . - 0 ID=Physo132466;Parent=Physo132466;rank=1 scaffold_21 . exon 104063 104938 . - . ID=Physo132466.1;Parent=Physo132466;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 108830 110260 . - . ID=Physo132467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210027;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 108830 110260 . - . ID=Physo132467;Parent=Physo132467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 108830 108901 . - 0 ID=Physo132467;Parent=Physo132467;rank=3 scaffold_21 . exon 108830 108901 . - . ID=Physo132467.3;Parent=Physo132467;constitutive=1;rank=3 scaffold_21 . CDS 108930 109463 . - 0 ID=Physo132467;Parent=Physo132467;rank=2 scaffold_21 . exon 108930 109463 . - . ID=Physo132467.2;Parent=Physo132467;constitutive=1;rank=2 scaffold_21 . CDS 109649 110260 . - 0 ID=Physo132467;Parent=Physo132467;rank=1 scaffold_21 . repeat_region 112979 113131 . ? . description=trf scaffold_21 . repeat_region 119102 119144 . ? . description=trf scaffold_21 . exon 109649 110260 . - . ID=Physo132467.1;Parent=Physo132467;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 118781 120334 . + . ID=Physo132468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210028;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 118781 120334 . + . ID=Physo132468;Parent=Physo132468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 118781 120334 . + 0 ID=Physo132468;Parent=Physo132468;rank=1 scaffold_21 . exon 118781 120334 . + . ID=Physo132468.1;Parent=Physo132468;constitutive=1;rank=1 scaffold_21 . repeat_region 120868 120878 . ? . description=dust scaffold_21 . repeat_region 120921 122579 . ? . description=dust scaffold_21 . repeat_region 122581 122934 . + . description=(TAGA)n scaffold_21 . repeat_region 122581 122935 . ? . description=dust scaffold_21 . biological_region 123550 123552 0.999 - . logic_name=eponine scaffold_21 . biological_region 123573 123576 0.999 - . logic_name=eponine scaffold_21 . biological_region 123645 123647 0.999 - . logic_name=eponine scaffold_21 . biological_region 126882 126884 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 123245 124546 . - . ID=Physo132469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210029;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 123245 124546 . - . ID=Physo132469;Parent=Physo132469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 123245 123247 . - 0 ID=Physo132469;Parent=Physo132469;rank=6 scaffold_21 . exon 123245 123247 . - . ID=Physo132469.6;Parent=Physo132469;constitutive=1;rank=6 scaffold_21 . CDS 123344 123759 . - 0 ID=Physo132469;Parent=Physo132469;rank=5 scaffold_21 . exon 123344 123759 . - . ID=Physo132469.5;Parent=Physo132469;constitutive=1;ensembl_phase=1;rank=5 scaffold_21 . CDS 123806 123999 . - 0 ID=Physo132469;Parent=Physo132469;rank=4 scaffold_21 . exon 123806 123999 . - . ID=Physo132469.4;Parent=Physo132469;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 124161 124195 . - 0 ID=Physo132469;Parent=Physo132469;rank=3 scaffold_21 . exon 124161 124195 . - . ID=Physo132469.3;Parent=Physo132469;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_21 . CDS 124219 124418 . - 0 ID=Physo132469;Parent=Physo132469;rank=2 scaffold_21 . exon 124219 124418 . - . ID=Physo132469.2;Parent=Physo132469;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 124441 124546 . - 0 ID=Physo132469;Parent=Physo132469;rank=1 scaffold_21 . exon 124441 124546 . - . ID=Physo132469.1;Parent=Physo132469;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 125633 127453 . - . ID=Physo132470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210030;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 125633 127453 . - . ID=Physo132470;Parent=Physo132470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 125633 127197 . - 0 ID=Physo132470;Parent=Physo132470;rank=2 scaffold_21 . exon 125633 127197 . - . ID=Physo132470.2;Parent=Physo132470;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 127330 127453 . - 0 ID=Physo132470;Parent=Physo132470;rank=1 scaffold_21 . exon 127330 127453 . - . ID=Physo132470.1;Parent=Physo132470;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 129191 130744 . - . ID=Physo132471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210031;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 129191 130744 . - . ID=Physo132471;Parent=Physo132471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 129191 130744 . - 0 ID=Physo132471;Parent=Physo132471;rank=1 scaffold_21 . exon 129191 130744 . - . ID=Physo132471.1;Parent=Physo132471;constitutive=1;rank=1 scaffold_21 . repeat_region 130233 130336 . ? . description=trf scaffold_21 . repeat_region 130381 130423 . ? . description=trf scaffold_21 . repeat_region 135561 135982 . ? . description=trf scaffold_21 . repeat_region 135597 135881 . ? . description=trf scaffold_21 . repeat_region 135597 135922 . ? . description=trf scaffold_21 . repeat_region 135735 136380 . ? . description=trf scaffold_21 . repeat_region 135768 136381 . ? . description=trf scaffold_21 . repeat_region 135778 136404 . ? . description=trf scaffold_21 . repeat_region 138644 138792 . ? . description=trf scaffold_21 . repeat_region 138698 138952 . ? . description=trf scaffold_21 . repeat_region 138831 138895 . ? . description=trf scaffold_21 ensembl protein_coding_gene 139270 140735 . - . ID=Physo108629;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_210003;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 139270 140735 . - . ID=Physo108629;Parent=Physo108629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 139270 139593 . - 0 ID=Physo108629;Parent=Physo108629;rank=3 scaffold_21 . exon 139270 139593 . - . ID=Physo108629.3;Parent=Physo108629;constitutive=1;rank=3 scaffold_21 . CDS 139669 140280 . - 0 ID=Physo108629;Parent=Physo108629;rank=2 scaffold_21 . CDS 140310 140735 . - 0 ID=Physo108629;Parent=Physo108629;rank=1 scaffold_21 ensembl protein_coding_gene 132776 134085 . + . ID=Physo132472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210032;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 132776 134085 . + . ID=Physo132472;Parent=Physo132472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 132776 133763 . + 0 ID=Physo132472;Parent=Physo132472;rank=1 scaffold_21 . exon 132776 133763 . + . ID=Physo132472.1;Parent=Physo132472;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 133838 134085 . + 0 ID=Physo132472;Parent=Physo132472;rank=2 scaffold_21 . exon 133838 134085 . + . ID=Physo132472.2;Parent=Physo132472;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 ensembl pseudogene 134997 136344 . + . ID=Physo132473;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_210033;logic_name=jgi_physo1_1 scaffold_21 ensembl pseudogene 134997 136344 . + . ID=Physo132473;Parent=Physo132473;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_21 . exon 134997 136096 . + . ID=Physo132473.1;Parent=Physo132473;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 . exon 136238 136287 . + . ID=Physo132473.2;Parent=Physo132473;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . exon 136316 136344 . + . ID=Physo132473.3;Parent=Physo132473;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_21 ensembl protein_coding_gene 138312 139042 . - . ID=Physo132474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210034;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 138312 139042 . - . ID=Physo132474;Parent=Physo132474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 138312 138374 . - 0 ID=Physo132474;Parent=Physo132474;rank=3 scaffold_21 . exon 138312 138374 . - . ID=Physo132474.3;Parent=Physo132474;constitutive=1;rank=3 scaffold_21 . CDS 138575 138797 . - 0 ID=Physo132474;Parent=Physo132474;rank=2 scaffold_21 . exon 138575 138797 . - . ID=Physo132474.2;Parent=Physo132474;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 139002 139042 . - 0 ID=Physo132474;Parent=Physo132474;rank=1 scaffold_21 . exon 139002 139042 . - . ID=Physo132474.1;Parent=Physo132474;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . biological_region 139913 139917 0.999 - . logic_name=eponine scaffold_21 . biological_region 140544 140544 0.999 + . logic_name=eponine scaffold_21 . repeat_region 140783 140823 . + . description=(TAGG)n scaffold_21 . repeat_region 140787 140823 . ? . description=dust scaffold_21 . biological_region 140807 140811 0.999 - . logic_name=eponine scaffold_21 . biological_region 140952 140953 0.999 - . logic_name=eponine scaffold_21 . repeat_region 142279 142329 . ? . description=dust scaffold_21 . biological_region 144807 144811 0.999 - . logic_name=eponine scaffold_21 . biological_region 145632 145635 0.999 - . logic_name=eponine scaffold_21 . biological_region 145811 145817 0.999 - . logic_name=eponine scaffold_21 . biological_region 145835 145840 0.999 - . logic_name=eponine scaffold_21 . biological_region 146390 146391 0.999 + . logic_name=eponine scaffold_21 . biological_region 146851 146851 0.999 + . logic_name=eponine scaffold_21 . biological_region 147636 147638 0.999 - . logic_name=eponine scaffold_21 . exon 139669 140280 . - . ID=Physo108629.2;Parent=Physo108629;constitutive=1;rank=2 scaffold_21 . exon 140310 140735 . - . ID=Physo108629.1;Parent=Physo108629;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 141057 142425 . - . ID=Physo132476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210036;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 141057 142425 . - . ID=Physo132476;Parent=Physo132476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 141057 141131 . - 0 ID=Physo132476;Parent=Physo132476;rank=4 scaffold_21 . exon 141057 141131 . - . ID=Physo132476.4;Parent=Physo132476;constitutive=1;rank=4 scaffold_21 . CDS 141151 141281 . - 0 ID=Physo132476;Parent=Physo132476;rank=3 scaffold_21 . exon 141151 141281 . - . ID=Physo132476.3;Parent=Physo132476;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 141333 142256 . - 0 ID=Physo132476;Parent=Physo132476;rank=2 scaffold_21 . exon 141333 142256 . - . ID=Physo132476.2;Parent=Physo132476;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 142360 142408 . - 0 ID=Physo132476;Parent=Physo132476;rank=1 scaffold_21 . exon 142360 142425 . - . ID=Physo132476.1;Parent=Physo132476;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 146576 147507 . + . ID=Physo132477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210037;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 146576 147507 . + . ID=Physo132477;Parent=Physo132477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 146576 147507 . + . ID=Physo132477.1;Parent=Physo132477;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 146626 147507 . + 0 ID=Physo132477;Parent=Physo132477;rank=1 scaffold_21 ensembl protein_coding_gene 148492 150825 . - . ID=Physo132478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210038;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 148492 150825 . - . ID=Physo132478;Parent=Physo132478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 148492 150825 . - 0 ID=Physo132478;Parent=Physo132478;rank=1 scaffold_21 . exon 148492 150825 . - . ID=Physo132478.1;Parent=Physo132478;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 151033 151934 . + . ID=Physo132479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210039;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 151033 151934 . + . ID=Physo132479;Parent=Physo132479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 151033 151347 . + 0 ID=Physo132479;Parent=Physo132479;rank=1 scaffold_21 . exon 151033 151347 . + . ID=Physo132479.1;Parent=Physo132479;constitutive=1;rank=1 scaffold_21 . CDS 151431 151934 . + 0 ID=Physo132479;Parent=Physo132479;rank=2 scaffold_21 . exon 151431 151934 . + . ID=Physo132479.2;Parent=Physo132479;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 153020 154096 . + . ID=Physo132480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210040;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 153020 154096 . + . ID=Physo132480;Parent=Physo132480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 153020 154024 . + 0 ID=Physo132480;Parent=Physo132480;rank=1 scaffold_21 . exon 153020 154096 . + . ID=Physo132480.1;Parent=Physo132480;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 154118 155114 . - . ID=Physo132481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210041;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 154118 155114 . - . ID=Physo132481;Parent=Physo132481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 154118 154444 . - 0 ID=Physo132481;Parent=Physo132481;rank=3 scaffold_21 . exon 154118 154444 . - . ID=Physo132481.3;Parent=Physo132481;constitutive=1;rank=3 scaffold_21 . CDS 154515 154647 . - 0 ID=Physo132481;Parent=Physo132481;rank=2 scaffold_21 . exon 154515 154647 . - . ID=Physo132481.2;Parent=Physo132481;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 154729 155114 . - 0 ID=Physo132481;Parent=Physo132481;rank=1 scaffold_21 . exon 154729 155114 . - . ID=Physo132481.1;Parent=Physo132481;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 155595 156410 . + . ID=Physo132482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210042;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 155595 156410 . + . ID=Physo132482;Parent=Physo132482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 155595 156410 . + 0 ID=Physo132482;Parent=Physo132482;rank=1 scaffold_21 . exon 155595 156410 . + . ID=Physo132482.1;Parent=Physo132482;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 157842 159454 . - . ID=Physo132483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210043;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 157842 159454 . - . ID=Physo132483;Parent=Physo132483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 157842 159206 . - . ID=Physo132483.4;Parent=Physo132483;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_21 . CDS 157956 159206 . - 0 ID=Physo132483;Parent=Physo132483;rank=4 scaffold_21 . CDS 159228 159239 . - 0 ID=Physo132483;Parent=Physo132483;rank=3 scaffold_21 . exon 159228 159239 . - . ID=Physo132483.3;Parent=Physo132483;constitutive=1;rank=3 scaffold_21 . CDS 159276 159285 . - 0 ID=Physo132483;Parent=Physo132483;rank=2 scaffold_21 . exon 159276 159285 . - . ID=Physo132483.2;Parent=Physo132483;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 159387 159454 . - 0 ID=Physo132483;Parent=Physo132483;rank=1 scaffold_21 . exon 159387 159454 . - . ID=Physo132483.1;Parent=Physo132483;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . repeat_region 163589 163609 . ? . description=trf scaffold_21 . biological_region 165983 165988 0.999 + . logic_name=eponine scaffold_21 . biological_region 166372 166372 0.999 + . logic_name=eponine scaffold_21 . biological_region 166383 166389 0.999 - . logic_name=eponine scaffold_21 . biological_region 166431 166435 0.999 - . logic_name=eponine scaffold_21 . biological_region 168227 168229 0.999 - . logic_name=eponine scaffold_21 . biological_region 168259 168264 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 162308 163566 . + . ID=Physo132484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210044;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 162308 163566 . + . ID=Physo132484;Parent=Physo132484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 162308 163016 . + 0 ID=Physo132484;Parent=Physo132484;rank=1 scaffold_21 . exon 162308 163016 . + . ID=Physo132484.1;Parent=Physo132484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 163090 163174 . + 0 ID=Physo132484;Parent=Physo132484;rank=2 scaffold_21 . exon 163090 163174 . + . ID=Physo132484.2;Parent=Physo132484;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 163263 163566 . + 0 ID=Physo132484;Parent=Physo132484;rank=3 scaffold_21 . exon 163263 163566 . + . ID=Physo132484.3;Parent=Physo132484;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 ensembl protein_coding_gene 164006 166540 . - . ID=Physo132485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210045;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 164006 166540 . - . ID=Physo132485;Parent=Physo132485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 164006 166540 . - 0 ID=Physo132485;Parent=Physo132485;rank=1 scaffold_21 . exon 164006 166540 . - . ID=Physo132485.1;Parent=Physo132485;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 168048 170866 . + . ID=Physo132486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210046;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 168048 170866 . + . ID=Physo132486;Parent=Physo132486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 168048 169447 . + 0 ID=Physo132486;Parent=Physo132486;rank=1 scaffold_21 . exon 168048 169447 . + . ID=Physo132486.1;Parent=Physo132486;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 169557 169645 . + 0 ID=Physo132486;Parent=Physo132486;rank=2 scaffold_21 . CDS 170123 170345 . + 0 ID=Physo132486;Parent=Physo132486;rank=3 scaffold_21 . CDS 170383 170542 . + 0 ID=Physo132486;Parent=Physo132486;rank=4 scaffold_21 . CDS 170572 170638 . + 0 ID=Physo132486;Parent=Physo132486;rank=5 scaffold_21 . CDS 170697 170866 . + 0 ID=Physo132486;Parent=Physo132486;rank=6 scaffold_21 . repeat_region 172141 172323 . + . description=GypsyPi-1c_LTR scaffold_21 . repeat_region 172324 172387 . + . description=GypsyPi-1c_I-int scaffold_21 . repeat_region 172435 173027 . ? . description=dust scaffold_21 . repeat_region 173031 177251 . + . description=GypsyPi-1c_I-int scaffold_21 . repeat_region 177269 180019 . + . description=GypsyPi-1c_I-int scaffold_21 . exon 169557 169645 . + . ID=Physo132486.2;Parent=Physo132486;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . exon 170123 170345 . + . ID=Physo132486.3;Parent=Physo132486;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . exon 170383 170542 . + . ID=Physo132486.4;Parent=Physo132486;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . exon 170572 170638 . + . ID=Physo132486.5;Parent=Physo132486;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_21 . exon 170697 170866 . + . ID=Physo132486.6;Parent=Physo132486;constitutive=1;ensembl_phase=1;rank=6 scaffold_21 ensembl protein_coding_gene 173037 177373 . + . ID=Physo132487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210047;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 173037 177373 . + . ID=Physo132487;Parent=Physo132487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 173037 173488 . + 0 ID=Physo132487;Parent=Physo132487;rank=1 scaffold_21 . exon 173037 173488 . + . ID=Physo132487.1;Parent=Physo132487;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 173781 175128 . + 0 ID=Physo132487;Parent=Physo132487;rank=2 scaffold_21 . exon 173781 175128 . + . ID=Physo132487.2;Parent=Physo132487;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 175232 176011 . + 0 ID=Physo132487;Parent=Physo132487;rank=3 scaffold_21 . exon 175232 176011 . + . ID=Physo132487.3;Parent=Physo132487;constitutive=1;rank=3 scaffold_21 . CDS 176098 176546 . + 0 ID=Physo132487;Parent=Physo132487;rank=4 scaffold_21 . exon 176098 176546 . + . ID=Physo132487.4;Parent=Physo132487;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_21 . CDS 176586 177318 . + 0 ID=Physo132487;Parent=Physo132487;rank=5 scaffold_21 . exon 176586 177318 . + . ID=Physo132487.5;Parent=Physo132487;constitutive=1;ensembl_phase=2;rank=5 scaffold_21 . CDS 177365 177373 . + 0 ID=Physo132487;Parent=Physo132487;rank=6 scaffold_21 . exon 177365 177373 . + . ID=Physo132487.6;Parent=Physo132487;constitutive=1;rank=6 scaffold_21 ensembl protein_coding_gene 177656 179833 . - . ID=Physo132488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210048;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 177656 179833 . - . ID=Physo132488;Parent=Physo132488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 177656 179833 . - 0 ID=Physo132488;Parent=Physo132488;rank=1 scaffold_21 . exon 177656 179833 . - . ID=Physo132488.1;Parent=Physo132488;constitutive=1;rank=1 scaffold_21 . biological_region 179567 179570 0.999 - . logic_name=eponine scaffold_21 . biological_region 179763 179768 0.999 - . logic_name=eponine scaffold_21 . biological_region 179775 179776 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 186334 187961 . + . ID=Physo132489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210049;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 186334 187961 . + . ID=Physo132489;Parent=Physo132489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 186334 187410 . + 0 ID=Physo132489;Parent=Physo132489;rank=1 scaffold_21 . exon 186334 187410 . + . ID=Physo132489.1;Parent=Physo132489;constitutive=1;rank=1 scaffold_21 . CDS 187449 187961 . + 0 ID=Physo132489;Parent=Physo132489;rank=2 scaffold_21 . exon 187449 187961 . + . ID=Physo132489.2;Parent=Physo132489;constitutive=1;rank=2 scaffold_21 . repeat_region 196796 206808 . ? . description=dust scaffold_21 ensembl protein_coding_gene 191294 193344 . + . ID=Physo132490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210050;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 191294 193344 . + . ID=Physo132490;Parent=Physo132490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 191294 192591 . + 0 ID=Physo132490;Parent=Physo132490;rank=1 scaffold_21 . exon 191294 192591 . + . ID=Physo132490.1;Parent=Physo132490;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 192722 193218 . + 0 ID=Physo132490;Parent=Physo132490;rank=2 scaffold_21 . exon 192722 193218 . + . ID=Physo132490.2;Parent=Physo132490;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 193307 193344 . + 0 ID=Physo132490;Parent=Physo132490;rank=3 scaffold_21 . exon 193307 193344 . + . ID=Physo132490.3;Parent=Physo132490;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 ensembl protein_coding_gene 194701 195366 . + . ID=Physo132491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210051;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 194701 195366 . + . ID=Physo132491;Parent=Physo132491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 194701 195366 . + 0 ID=Physo132491;Parent=Physo132491;rank=1 scaffold_21 . exon 194701 195366 . + . ID=Physo132491.1;Parent=Physo132491;constitutive=1;rank=1 scaffold_21 . repeat_region 206809 212247 . ? . description=dust scaffold_21 . biological_region 212419 212423 0.999 - . logic_name=eponine scaffold_21 . biological_region 217337 217339 0.999 - . logic_name=eponine scaffold_21 . repeat_region 217424 217552 . ? . description=trf scaffold_21 . biological_region 217649 217651 0.999 - . logic_name=eponine scaffold_21 . biological_region 217676 217679 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 213876 214250 . + . ID=Physo132492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210052;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 213876 214250 . + . ID=Physo132492;Parent=Physo132492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 213876 214250 . + 0 ID=Physo132492;Parent=Physo132492;rank=1 scaffold_21 . exon 213876 214250 . + . ID=Physo132492.1;Parent=Physo132492;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 221885 223468 . + . ID=Physo132493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210053;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 221885 223468 . + . ID=Physo132493;Parent=Physo132493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 221885 222256 . + 0 ID=Physo132493;Parent=Physo132493;rank=1 scaffold_21 . exon 221885 222256 . + . ID=Physo132493.1;Parent=Physo132493;constitutive=1;rank=1 scaffold_21 . CDS 222289 222560 . + 0 ID=Physo132493;Parent=Physo132493;rank=2 scaffold_21 . exon 222289 222560 . + . ID=Physo132493.2;Parent=Physo132493;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . CDS 222642 222648 . + 0 ID=Physo132493;Parent=Physo132493;rank=3 scaffold_21 . exon 222642 222648 . + . ID=Physo132493.3;Parent=Physo132493;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 222863 223468 . + 0 ID=Physo132493;Parent=Physo132493;rank=4 scaffold_21 . exon 222863 223468 . + . ID=Physo132493.4;Parent=Physo132493;constitutive=1;rank=4 scaffold_21 ensembl protein_coding_gene 224005 229931 . + . ID=Physo132494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210054;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 224005 229931 . + . ID=Physo132494;Parent=Physo132494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 224005 224182 . + 0 ID=Physo132494;Parent=Physo132494;rank=1 scaffold_21 . exon 224005 224182 . + . ID=Physo132494.1;Parent=Physo132494;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 224223 224468 . + 0 ID=Physo132494;Parent=Physo132494;rank=2 scaffold_21 . exon 224223 224468 . + . ID=Physo132494.2;Parent=Physo132494;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 224522 225299 . + 0 ID=Physo132494;Parent=Physo132494;rank=3 scaffold_21 . exon 224522 225299 . + . ID=Physo132494.3;Parent=Physo132494;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . CDS 225429 226241 . + 0 ID=Physo132494;Parent=Physo132494;rank=4 scaffold_21 . exon 225429 226241 . + . ID=Physo132494.4;Parent=Physo132494;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . CDS 226328 226555 . + 0 ID=Physo132494;Parent=Physo132494;rank=5 scaffold_21 . exon 226328 226555 . + . ID=Physo132494.5;Parent=Physo132494;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_21 . CDS 226643 227068 . + 0 ID=Physo132494;Parent=Physo132494;rank=6 scaffold_21 . exon 226643 227068 . + . ID=Physo132494.6;Parent=Physo132494;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_21 . CDS 227201 229931 . + 0 ID=Physo132494;Parent=Physo132494;rank=7 scaffold_21 . exon 227201 229931 . + . ID=Physo132494.7;Parent=Physo132494;constitutive=1;ensembl_phase=2;rank=7 scaffold_21 . biological_region 229609 229611 0.999 + . logic_name=eponine scaffold_21 . biological_region 231308 231308 0.999 + . logic_name=eponine scaffold_21 . biological_region 231385 231387 0.999 + . logic_name=eponine scaffold_21 . biological_region 231428 231437 0.999 - . logic_name=eponine scaffold_21 . biological_region 231483 231489 0.999 + . logic_name=eponine scaffold_21 . biological_region 233201 233202 0.999 + . logic_name=eponine scaffold_21 . repeat_region 234364 234409 . ? . description=trf scaffold_21 . repeat_region 236293 236300 . ? . description=dust scaffold_21 ensembl protein_coding_gene 230125 231510 . - . ID=Physo132495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210055;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 230125 231510 . - . ID=Physo132495;Parent=Physo132495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 230125 231510 . - 0 ID=Physo132495;Parent=Physo132495;rank=1 scaffold_21 . exon 230125 231510 . - . ID=Physo132495.1;Parent=Physo132495;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 232186 233043 . + . ID=Physo132496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210056;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 232186 233043 . + . ID=Physo132496;Parent=Physo132496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 232186 233043 . + 0 ID=Physo132496;Parent=Physo132496;rank=1 scaffold_21 . exon 232186 233043 . + . ID=Physo132496.1;Parent=Physo132496;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 234062 235728 . + . ID=Physo132497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210057;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 234062 235728 . + . ID=Physo132497;Parent=Physo132497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 234062 234922 . + 0 ID=Physo132497;Parent=Physo132497;rank=1 scaffold_21 . exon 234062 234922 . + . ID=Physo132497.1;Parent=Physo132497;constitutive=1;rank=1 scaffold_21 . CDS 234943 235728 . + 0 ID=Physo132497;Parent=Physo132497;rank=2 scaffold_21 . exon 234943 235728 . + . ID=Physo132497.2;Parent=Physo132497;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 247574 249123 . - . ID=Physo132498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210058;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 247574 249123 . - . ID=Physo132498;Parent=Physo132498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 247574 247739 . - 0 ID=Physo132498;Parent=Physo132498;rank=3 scaffold_21 . exon 247574 247739 . - . ID=Physo132498.3;Parent=Physo132498;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 247814 248477 . - 0 ID=Physo132498;Parent=Physo132498;rank=2 scaffold_21 . exon 247814 248477 . - . ID=Physo132498.2;Parent=Physo132498;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 248655 249123 . - 0 ID=Physo132498;Parent=Physo132498;rank=1 scaffold_21 . exon 248655 249123 . - . ID=Physo132498.1;Parent=Physo132498;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . repeat_region 249433 249466 . ? . description=trf scaffold_21 . repeat_region 249433 249479 . ? . description=dust scaffold_21 . biological_region 252320 252323 0.999 + . logic_name=eponine scaffold_21 . biological_region 253290 253295 0.999 + . logic_name=eponine scaffold_21 . repeat_region 256538 256548 . ? . description=dust scaffold_21 . repeat_region 256574 256581 . ? . description=dust scaffold_21 . repeat_region 256701 256715 . ? . description=dust scaffold_21 . repeat_region 258024 258120 . ? . description=trf scaffold_21 . repeat_region 258348 258440 . ? . description=trf scaffold_21 ensembl protein_coding_gene 256850 258551 . - . ID=Physo132499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210059;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 256850 258551 . - . ID=Physo132499;Parent=Physo132499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 256850 257416 . - 0 ID=Physo132499;Parent=Physo132499;rank=3 scaffold_21 . exon 256850 257416 . - . ID=Physo132499.3;Parent=Physo132499;constitutive=1;rank=3 scaffold_21 . CDS 257553 258244 . - 0 ID=Physo132499;Parent=Physo132499;rank=2 scaffold_21 . exon 257553 258244 . - . ID=Physo132499.2;Parent=Physo132499;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 258542 258551 . - 0 ID=Physo132499;Parent=Physo132499;rank=1 scaffold_21 . exon 258542 258551 . - . ID=Physo132499.1;Parent=Physo132499;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 262480 264489 . - . ID=Physo108630;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_210004;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 262480 264489 . - . ID=Physo108630;Parent=Physo108630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 262480 264489 . - 0 ID=Physo108630;Parent=Physo108630;rank=1 scaffold_21 . exon 262480 264489 . - . ID=Physo108630.1;Parent=Physo108630;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 259378 259950 . + . ID=Physo132500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210060;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 259378 259950 . + . ID=Physo132500;Parent=Physo132500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 259378 259950 . + 0 ID=Physo132500;Parent=Physo132500;rank=1 scaffold_21 . exon 259378 259950 . + . ID=Physo132500.1;Parent=Physo132500;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 260768 261452 . + . ID=Physo132501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210061;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 260768 261452 . + . ID=Physo132501;Parent=Physo132501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 260768 261261 . + 0 ID=Physo132501;Parent=Physo132501;rank=1 scaffold_21 . exon 260768 261261 . + . ID=Physo132501.1;Parent=Physo132501;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 261333 261450 . + 0 ID=Physo132501;Parent=Physo132501;rank=2 scaffold_21 . exon 261333 261452 . + . ID=Physo132501.2;Parent=Physo132501;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_21 . repeat_region 271158 271173 . ? . description=dust scaffold_21 . repeat_region 277145 277194 . ? . description=dust scaffold_21 . repeat_region 278838 278845 . ? . description=dust scaffold_21 . biological_region 279620 279624 0.999 - . logic_name=eponine scaffold_21 . biological_region 281308 281308 0.999 - . logic_name=eponine scaffold_21 . biological_region 284713 284714 0.999 - . logic_name=eponine scaffold_21 . biological_region 285260 285266 0.999 - . logic_name=eponine scaffold_21 . biological_region 285318 285320 0.999 - . logic_name=eponine scaffold_21 . biological_region 288625 288627 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 279987 280475 . + . ID=Physo132503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210063;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 279987 280475 . + . ID=Physo132503;Parent=Physo132503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 279987 280475 . + 0 ID=Physo132503;Parent=Physo132503;rank=1 scaffold_21 . exon 279987 280475 . + . ID=Physo132503.1;Parent=Physo132503;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 283045 284738 . - . ID=Physo132504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210064;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 283045 284738 . - . ID=Physo132504;Parent=Physo132504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 283045 283315 . - . ID=Physo132504.4;Parent=Physo132504;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_21 . CDS 283136 283315 . - 0 ID=Physo132504;Parent=Physo132504;rank=4 scaffold_21 . CDS 283390 283533 . - 0 ID=Physo132504;Parent=Physo132504;rank=3 scaffold_21 . exon 283390 283533 . - . ID=Physo132504.3;Parent=Physo132504;constitutive=1;rank=3 scaffold_21 . CDS 283612 283758 . - 0 ID=Physo132504;Parent=Physo132504;rank=2 scaffold_21 . exon 283612 283758 . - . ID=Physo132504.2;Parent=Physo132504;constitutive=1;rank=2 scaffold_21 . CDS 283827 284738 . - 0 ID=Physo132504;Parent=Physo132504;rank=1 scaffold_21 . exon 283827 284738 . - . ID=Physo132504.1;Parent=Physo132504;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 284940 288669 . + . ID=Physo132505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210065;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 284940 288669 . + . ID=Physo132505;Parent=Physo132505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 284940 285620 . + 0 ID=Physo132505;Parent=Physo132505;rank=1 scaffold_21 . exon 284940 285620 . + . ID=Physo132505.1;Parent=Physo132505;constitutive=1;rank=1 scaffold_21 . CDS 285710 285763 . + 0 ID=Physo132505;Parent=Physo132505;rank=2 scaffold_21 . exon 285710 285763 . + . ID=Physo132505.2;Parent=Physo132505;constitutive=1;rank=2 scaffold_21 . CDS 285835 287273 . + 0 ID=Physo132505;Parent=Physo132505;rank=3 scaffold_21 . exon 285835 287273 . + . ID=Physo132505.3;Parent=Physo132505;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_21 . CDS 287475 287652 . + 0 ID=Physo132505;Parent=Physo132505;rank=4 scaffold_21 . exon 287475 287652 . + . ID=Physo132505.4;Parent=Physo132505;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 287731 288669 . + 0 ID=Physo132505;Parent=Physo132505;rank=5 scaffold_21 . exon 287731 288669 . + . ID=Physo132505.5;Parent=Physo132505;constitutive=1;rank=5 scaffold_21 . repeat_region 298257 298264 . ? . description=dust scaffold_21 . repeat_region 298425 298691 . ? . description=dust scaffold_21 . biological_region 300280 300281 0.999 - . logic_name=eponine scaffold_21 . biological_region 300300 300307 0.999 - . logic_name=eponine scaffold_21 . biological_region 301728 301728 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 306363 306677 . + . ID=Physo114572;biotype=protein_coding;external_name=estExt_Genewise1.C_210005;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 306363 306677 . + . ID=Physo114572;Parent=Physo114572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 306363 306677 . + . ID=Physo114572.1;Parent=Physo114572;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 306390 306677 . + 0 ID=Physo114572;Parent=Physo114572;rank=1 scaffold_21 ensembl protein_coding_gene 306714 306917 . + . ID=Physo114574;biotype=protein_coding;external_name=estExt_Genewise1.C_210007;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 306714 306917 . + . ID=Physo114574;Parent=Physo114574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 306714 306917 . + . ID=Physo114574.1;Parent=Physo114574;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 306750 306917 . + 0 ID=Physo114574;Parent=Physo114574;rank=1 scaffold_21 ensembl protein_coding_gene 307005 307925 . + . ID=Physo132507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210067;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 307005 307925 . + . ID=Physo132507;Parent=Physo132507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 307005 307925 . + 0 ID=Physo132507;Parent=Physo132507;rank=1 scaffold_21 . exon 307005 307925 . + . ID=Physo132507.1;Parent=Physo132507;constitutive=1;rank=1 scaffold_21 . repeat_region 310427 310434 . ? . description=dust scaffold_21 . repeat_region 314746 314753 . ? . description=dust scaffold_21 ensembl protein_coding_gene 312907 317509 . - . ID=Physo132508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210068;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 312907 317509 . - . ID=Physo132508;Parent=Physo132508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 312907 313672 . - 0 ID=Physo132508;Parent=Physo132508;rank=3 scaffold_21 . exon 312907 313672 . - . ID=Physo132508.3;Parent=Physo132508;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 313827 314294 . - 0 ID=Physo132508;Parent=Physo132508;rank=2 scaffold_21 . exon 313827 314294 . - . ID=Physo132508.2;Parent=Physo132508;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 314868 317509 . - 0 ID=Physo132508;Parent=Physo132508;rank=1 scaffold_21 . exon 314868 317509 . - . ID=Physo132508.1;Parent=Physo132508;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . biological_region 322553 322556 0.999 + . logic_name=eponine scaffold_21 . biological_region 325949 325952 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 319158 323781 . + . ID=Physo132509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210069;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 319158 323781 . + . ID=Physo132509;Parent=Physo132509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 319158 321802 . + 0 ID=Physo132509;Parent=Physo132509;rank=1 scaffold_21 . exon 319158 321802 . + . ID=Physo132509.1;Parent=Physo132509;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 322376 322843 . + 0 ID=Physo132509;Parent=Physo132509;rank=2 scaffold_21 . exon 322376 322843 . + . ID=Physo132509.2;Parent=Physo132509;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 322998 323781 . + 0 ID=Physo132509;Parent=Physo132509;rank=3 scaffold_21 . exon 322998 323781 . + . ID=Physo132509.3;Parent=Physo132509;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 ensembl protein_coding_gene 324723 326855 . - . ID=Physo132510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210070;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 324723 326855 . - . ID=Physo132510;Parent=Physo132510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 324723 325506 . - 0 ID=Physo132510;Parent=Physo132510;rank=6 scaffold_21 . exon 324723 325506 . - . ID=Physo132510.6;Parent=Physo132510;constitutive=1;ensembl_phase=2;rank=6 scaffold_21 . CDS 325661 326128 . - 0 ID=Physo132510;Parent=Physo132510;rank=5 scaffold_21 . exon 325661 326128 . - . ID=Physo132510.5;Parent=Physo132510;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_21 . CDS 326205 326279 . - 0 ID=Physo132510;Parent=Physo132510;rank=4 scaffold_21 . exon 326205 326279 . - . ID=Physo132510.4;Parent=Physo132510;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . CDS 326351 326465 . - 0 ID=Physo132510;Parent=Physo132510;rank=3 scaffold_21 . exon 326351 326465 . - . ID=Physo132510.3;Parent=Physo132510;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . CDS 326534 326685 . - 0 ID=Physo132510;Parent=Physo132510;rank=2 scaffold_21 . exon 326534 326685 . - . ID=Physo132510.2;Parent=Physo132510;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 326764 326855 . - 0 ID=Physo132510;Parent=Physo132510;rank=1 scaffold_21 . exon 326764 326855 . - . ID=Physo132510.1;Parent=Physo132510;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . repeat_region 329251 329308 . ? . description=trf scaffold_21 . repeat_region 329726 329733 . ? . description=dust scaffold_21 . repeat_region 330175 330196 . ? . description=trf scaffold_21 . repeat_region 331462 331480 . ? . description=dust scaffold_21 . repeat_region 338220 338263 . ? . description=trf scaffold_21 ensembl protein_coding_gene 338688 340952 . + . ID=Physo108632;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_210006;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 338688 340952 . + . ID=Physo108632;Parent=Physo108632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 338688 340919 . + 0 ID=Physo108632;Parent=Physo108632;rank=1 scaffold_21 . exon 338688 340952 . + . ID=Physo108632.1;Parent=Physo108632;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 330008 330559 . - . ID=Physo132511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210071;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 330008 330559 . - . ID=Physo132511;Parent=Physo132511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 330008 330132 . - 0 ID=Physo132511;Parent=Physo132511;rank=3 scaffold_21 . exon 330008 330132 . - . ID=Physo132511.3;Parent=Physo132511;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 330217 330374 . - 0 ID=Physo132511;Parent=Physo132511;rank=2 scaffold_21 . exon 330217 330374 . - . ID=Physo132511.2;Parent=Physo132511;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 330435 330559 . - 0 ID=Physo132511;Parent=Physo132511;rank=1 scaffold_21 . exon 330435 330559 . - . ID=Physo132511.1;Parent=Physo132511;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 337196 338464 . - . ID=Physo132512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210072;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 337196 338464 . - . ID=Physo132512;Parent=Physo132512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 337196 338025 . - 0 ID=Physo132512;Parent=Physo132512;rank=3 scaffold_21 . exon 337196 338025 . - . ID=Physo132512.3;Parent=Physo132512;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 338109 338199 . - 0 ID=Physo132512;Parent=Physo132512;rank=2 scaffold_21 . exon 338109 338199 . - . ID=Physo132512.2;Parent=Physo132512;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 338293 338454 . - 0 ID=Physo132512;Parent=Physo132512;rank=1 scaffold_21 . exon 338293 338464 . - . ID=Physo132512.1;Parent=Physo132512;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 . biological_region 339017 339022 0.999 + . logic_name=eponine scaffold_21 . biological_region 339063 339068 0.999 + . logic_name=eponine scaffold_21 . biological_region 339078 339082 0.999 + . logic_name=eponine scaffold_21 . biological_region 339139 339143 0.999 - . logic_name=eponine scaffold_21 . biological_region 339147 339151 0.999 + . logic_name=eponine scaffold_21 . biological_region 339236 339240 0.999 - . logic_name=eponine scaffold_21 . biological_region 341334 341335 0.999 + . logic_name=eponine scaffold_21 . biological_region 341915 341917 0.999 - . logic_name=eponine scaffold_21 . biological_region 343691 343694 0.999 - . logic_name=eponine scaffold_21 . biological_region 344595 344599 0.999 + . logic_name=eponine scaffold_21 . biological_region 344617 344623 0.999 + . logic_name=eponine scaffold_21 . biological_region 344624 344630 0.999 - . logic_name=eponine scaffold_21 . biological_region 344662 344665 0.999 - . logic_name=eponine scaffold_21 . biological_region 344699 344707 0.999 - . logic_name=eponine scaffold_21 . biological_region 344750 344754 0.999 - . logic_name=eponine scaffold_21 . biological_region 345131 345136 0.999 - . logic_name=eponine scaffold_21 . biological_region 346626 346633 0.999 + . logic_name=eponine scaffold_21 . biological_region 347565 347566 0.999 - . logic_name=eponine scaffold_21 . biological_region 347646 347647 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 341308 343356 . + . ID=Physo132514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210074;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 341308 343356 . + . ID=Physo132514;Parent=Physo132514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 341308 342075 . + 0 ID=Physo132514;Parent=Physo132514;rank=1 scaffold_21 . exon 341308 342075 . + . ID=Physo132514.1;Parent=Physo132514;constitutive=1;rank=1 scaffold_21 . CDS 342165 342572 . + 0 ID=Physo132514;Parent=Physo132514;rank=2 scaffold_21 . exon 342165 342572 . + . ID=Physo132514.2;Parent=Physo132514;constitutive=1;rank=2 scaffold_21 . CDS 342652 343356 . + 0 ID=Physo132514;Parent=Physo132514;rank=3 scaffold_21 . exon 342652 343356 . + . ID=Physo132514.3;Parent=Physo132514;constitutive=1;rank=3 scaffold_21 ensembl protein_coding_gene 344395 349206 . + . ID=Physo132515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210075;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 344395 349206 . + . ID=Physo132515;Parent=Physo132515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 344395 349206 . + 0 ID=Physo132515;Parent=Physo132515;rank=1 scaffold_21 . exon 344395 349206 . + . ID=Physo132515.1;Parent=Physo132515;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 355539 357129 . - . ID=Physo132517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210077;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 355539 357129 . - . ID=Physo132517;Parent=Physo132517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 355539 356188 . - 0 ID=Physo132517;Parent=Physo132517;rank=2 scaffold_21 . exon 355539 356188 . - . ID=Physo132517.2;Parent=Physo132517;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 356431 357118 . - 0 ID=Physo132517;Parent=Physo132517;rank=1 scaffold_21 . exon 356431 357129 . - . ID=Physo132517.1;Parent=Physo132517;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 357359 358167 . + . ID=Physo132518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210078;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 357359 358167 . + . ID=Physo132518;Parent=Physo132518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 357359 358054 . + 0 ID=Physo132518;Parent=Physo132518;rank=1 scaffold_21 . exon 357359 358054 . + . ID=Physo132518.1;Parent=Physo132518;constitutive=1;rank=1 scaffold_21 . CDS 358147 358167 . + 0 ID=Physo132518;Parent=Physo132518;rank=2 scaffold_21 . exon 358147 358167 . + . ID=Physo132518.2;Parent=Physo132518;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 349442 354337 . - . ID=Physo156517;biotype=protein_coding;external_name=C_scaffold_21000007;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 349442 354337 . - . ID=Physo156517;Parent=Physo156517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 349442 349469 . - 0 ID=Physo156517;Parent=Physo156517;rank=11 scaffold_21 . exon 349442 349469 . - . ID=Physo156517.11;Parent=Physo156517;constitutive=1;ensembl_phase=2;rank=11 scaffold_21 . CDS 349578 349792 . - 0 ID=Physo156517;Parent=Physo156517;rank=10 scaffold_21 . exon 349578 349792 . - . ID=Physo156517.10;Parent=Physo156517;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_21 . CDS 349856 350625 . - 0 ID=Physo156517;Parent=Physo156517;rank=9 scaffold_21 . exon 349856 350625 . - . ID=Physo156517.9;Parent=Physo156517;constitutive=1;ensembl_phase=1;rank=9 scaffold_21 . CDS 350701 351016 . - 0 ID=Physo156517;Parent=Physo156517;rank=8 scaffold_21 . exon 350701 351016 . - . ID=Physo156517.8;Parent=Physo156517;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_21 . CDS 351068 351478 . - 0 ID=Physo156517;Parent=Physo156517;rank=7 scaffold_21 . exon 351068 351478 . - . ID=Physo156517.7;Parent=Physo156517;constitutive=1;rank=7 scaffold_21 . CDS 351524 351790 . - 0 ID=Physo156517;Parent=Physo156517;rank=6 scaffold_21 . exon 351524 351790 . - . ID=Physo156517.6;Parent=Physo156517;constitutive=1;rank=6 scaffold_21 . CDS 351857 351978 . - 0 ID=Physo156517;Parent=Physo156517;rank=5 scaffold_21 . exon 351857 351978 . - . ID=Physo156517.5;Parent=Physo156517;constitutive=1;ensembl_phase=1;rank=5 scaffold_21 . CDS 352036 352488 . - 0 ID=Physo156517;Parent=Physo156517;rank=4 scaffold_21 . exon 352036 352488 . - . ID=Physo156517.4;Parent=Physo156517;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_21 . CDS 352525 352963 . - 0 ID=Physo156517;Parent=Physo156517;rank=3 scaffold_21 . exon 352525 352963 . - . ID=Physo156517.3;Parent=Physo156517;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_21 . CDS 353036 353747 . - 0 ID=Physo156517;Parent=Physo156517;rank=2 scaffold_21 . exon 353036 353747 . - . ID=Physo156517.2;Parent=Physo156517;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 353778 354337 . - 0 ID=Physo156517;Parent=Physo156517;rank=1 scaffold_21 . exon 353778 354337 . - . ID=Physo156517.1;Parent=Physo156517;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 354747 355078 . + . ID=Physo156518;biotype=protein_coding;external_name=C_scaffold_21000008;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 354747 355078 . + . ID=Physo156518;Parent=Physo156518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 354747 354778 . + 0 ID=Physo156518;Parent=Physo156518;rank=1 scaffold_21 . exon 354747 354778 . + . ID=Physo156518.1;Parent=Physo156518;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 354847 355078 . + 0 ID=Physo156518;Parent=Physo156518;rank=2 scaffold_21 . exon 354847 355078 . + . ID=Physo156518.2;Parent=Physo156518;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . repeat_region 360641 360661 . ? . description=trf scaffold_21 . repeat_region 360801 360824 . ? . description=trf scaffold_21 . biological_region 360925 360927 0.999 - . logic_name=eponine scaffold_21 . biological_region 360968 360976 0.999 - . logic_name=eponine scaffold_21 . biological_region 362059 362063 0.999 - . logic_name=eponine scaffold_21 . repeat_region 362220 362238 . ? . description=dust scaffold_21 . biological_region 363628 363632 0.999 + . logic_name=eponine scaffold_21 . biological_region 363681 363686 0.999 + . logic_name=eponine scaffold_21 . biological_region 365440 365443 0.999 - . logic_name=eponine scaffold_21 . biological_region 366223 366223 0.999 - . logic_name=eponine scaffold_21 . biological_region 366276 366280 0.999 + . logic_name=eponine scaffold_21 . biological_region 366306 366310 0.999 - . logic_name=eponine scaffold_21 . biological_region 366394 366398 0.999 + . logic_name=eponine scaffold_21 . biological_region 368256 368260 0.999 - . logic_name=eponine scaffold_21 . biological_region 368289 368292 0.999 + . logic_name=eponine scaffold_21 . biological_region 368326 368326 0.999 - . logic_name=eponine scaffold_21 . biological_region 368369 368372 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 359249 360457 . - . ID=Physo132519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210079;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 359249 360457 . - . ID=Physo132519;Parent=Physo132519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 359249 360457 . - 0 ID=Physo132519;Parent=Physo132519;rank=1 scaffold_21 . exon 359249 360457 . - . ID=Physo132519.1;Parent=Physo132519;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 360638 361523 . + . ID=Physo132520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210080;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 360638 361523 . + . ID=Physo132520;Parent=Physo132520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 360638 361523 . + . ID=Physo132520.1;Parent=Physo132520;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 360678 361523 . + 0 ID=Physo132520;Parent=Physo132520;rank=1 scaffold_21 ensembl protein_coding_gene 363157 364251 . + . ID=Physo132521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210081;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 363157 364251 . + . ID=Physo132521;Parent=Physo132521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 363157 363963 . + 0 ID=Physo132521;Parent=Physo132521;rank=1 scaffold_21 . exon 363157 364251 . + . ID=Physo132521.1;Parent=Physo132521;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 364308 365222 . - . ID=Physo132522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210082;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 364308 365222 . - . ID=Physo132522;Parent=Physo132522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 364308 364460 . - . ID=Physo132522.5;Parent=Physo132522;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_21 . CDS 364316 364460 . - 0 ID=Physo132522;Parent=Physo132522;rank=5 scaffold_21 . CDS 364594 364665 . - 0 ID=Physo132522;Parent=Physo132522;rank=4 scaffold_21 . exon 364594 364665 . - . ID=Physo132522.4;Parent=Physo132522;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . CDS 364756 364872 . - 0 ID=Physo132522;Parent=Physo132522;rank=3 scaffold_21 . exon 364756 364872 . - . ID=Physo132522.3;Parent=Physo132522;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_21 . CDS 364966 365003 . - 0 ID=Physo132522;Parent=Physo132522;rank=2 scaffold_21 . exon 364966 365003 . - . ID=Physo132522.2;Parent=Physo132522;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . CDS 365077 365205 . - 0 ID=Physo132522;Parent=Physo132522;rank=1 scaffold_21 . exon 365077 365222 . - . ID=Physo132522.1;Parent=Physo132522;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 365990 366481 . + . ID=Physo156520;biotype=protein_coding;external_name=C_scaffold_21000010;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 365990 366481 . + . ID=Physo156520;Parent=Physo156520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 365990 366481 . + 0 ID=Physo156520;Parent=Physo156520;rank=1 scaffold_21 . exon 365990 366481 . + . ID=Physo156520.1;Parent=Physo156520;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 369807 371276 . + . ID=Physo132524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210084;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 369807 371276 . + . ID=Physo132524;Parent=Physo132524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 369807 371276 . + 0 ID=Physo132524;Parent=Physo132524;rank=1 scaffold_21 . exon 369807 371276 . + . ID=Physo132524.1;Parent=Physo132524;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 374394 375343 . + . ID=Physo132525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210085;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 374394 375343 . + . ID=Physo132525;Parent=Physo132525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 374394 375212 . + 0 ID=Physo132525;Parent=Physo132525;rank=1 scaffold_21 . exon 374394 375212 . + . ID=Physo132525.1;Parent=Physo132525;constitutive=1;rank=1 scaffold_21 . CDS 375326 375343 . + 0 ID=Physo132525;Parent=Physo132525;rank=2 scaffold_21 . exon 375326 375343 . + . ID=Physo132525.2;Parent=Physo132525;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 377672 379180 . - . ID=Physo132526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210086;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 377672 379180 . - . ID=Physo132526;Parent=Physo132526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 377672 378157 . - 0 ID=Physo132526;Parent=Physo132526;rank=4 scaffold_21 . exon 377672 378157 . - . ID=Physo132526.4;Parent=Physo132526;constitutive=1;rank=4 scaffold_21 . CDS 378178 378374 . - 0 ID=Physo132526;Parent=Physo132526;rank=3 scaffold_21 . exon 378178 378374 . - . ID=Physo132526.3;Parent=Physo132526;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 378521 379078 . - 0 ID=Physo132526;Parent=Physo132526;rank=2 scaffold_21 . exon 378521 379078 . - . ID=Physo132526.2;Parent=Physo132526;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 379144 379180 . - 0 ID=Physo132526;Parent=Physo132526;rank=1 scaffold_21 . biological_region 378659 378660 0.999 + . logic_name=eponine scaffold_21 . repeat_region 379648 379656 . ? . description=dust scaffold_21 . repeat_region 380535 380542 . ? . description=dust scaffold_21 . repeat_region 380839 380862 . ? . description=trf scaffold_21 . biological_region 381336 381341 0.999 + . logic_name=eponine scaffold_21 . repeat_region 381346 381376 . ? . description=trf scaffold_21 . biological_region 382034 382036 0.999 + . logic_name=eponine scaffold_21 . biological_region 382089 382092 0.999 + . logic_name=eponine scaffold_21 . biological_region 382634 382636 0.999 - . logic_name=eponine scaffold_21 . biological_region 382736 382736 0.999 - . logic_name=eponine scaffold_21 . biological_region 384397 384397 0.999 - . logic_name=eponine scaffold_21 . biological_region 384597 384598 0.999 - . logic_name=eponine scaffold_21 . repeat_region 384664 384682 . ? . description=dust scaffold_21 . biological_region 384797 384800 0.999 - . logic_name=eponine scaffold_21 . biological_region 384808 384810 0.999 + . logic_name=eponine scaffold_21 . biological_region 384819 384822 0.999 - . logic_name=eponine scaffold_21 . biological_region 384826 384832 0.999 + . logic_name=eponine scaffold_21 . biological_region 384835 384842 0.999 + . logic_name=eponine scaffold_21 . biological_region 384849 384857 0.999 + . logic_name=eponine scaffold_21 . biological_region 384863 384868 0.999 - . logic_name=eponine scaffold_21 . repeat_region 384879 384911 . ? . description=dust scaffold_21 . biological_region 384896 384899 0.999 - . logic_name=eponine scaffold_21 . biological_region 384915 384916 0.999 - . logic_name=eponine scaffold_21 . biological_region 384931 384942 0.999 - . logic_name=eponine scaffold_21 . biological_region 384953 384956 0.999 - . logic_name=eponine scaffold_21 . biological_region 384972 384974 0.999 - . logic_name=eponine scaffold_21 . biological_region 386894 386895 0.999 - . logic_name=eponine scaffold_21 . biological_region 388010 388012 0.999 + . logic_name=eponine scaffold_21 . biological_region 388029 388034 0.999 + . logic_name=eponine scaffold_21 . biological_region 388046 388046 0.999 + . logic_name=eponine scaffold_21 . repeat_region 388084 388146 . + . description=(CGA)n scaffold_21 . repeat_region 388086 388148 . ? . description=trf scaffold_21 . repeat_region 388093 388146 . ? . description=dust scaffold_21 . repeat_region 388093 388146 . ? . description=trf scaffold_21 . repeat_region 388093 388146 . ? . description=trf scaffold_21 . repeat_region 388093 388148 . ? . description=trf scaffold_21 . biological_region 388151 388155 0.999 - . logic_name=eponine scaffold_21 . exon 379144 379180 . - . ID=Physo132526.1;Parent=Physo132526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 380772 382322 . - . ID=Physo132527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210087;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 380772 382322 . - . ID=Physo132527;Parent=Physo132527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 380772 382322 . - 0 ID=Physo132527;Parent=Physo132527;rank=1 scaffold_21 . exon 380772 382322 . - . ID=Physo132527.1;Parent=Physo132527;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 383396 385116 . - . ID=Physo132528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210088;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 383396 385116 . - . ID=Physo132528;Parent=Physo132528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 383396 385116 . - . ID=Physo132528.1;Parent=Physo132528;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 383713 385083 . - 0 ID=Physo132528;Parent=Physo132528;rank=1 scaffold_21 ensembl protein_coding_gene 387780 388478 . + . ID=Physo132529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210089;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 387780 388478 . + . ID=Physo132529;Parent=Physo132529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 387780 388478 . + . ID=Physo132529.1;Parent=Physo132529;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 387821 388375 . + 0 ID=Physo132529;Parent=Physo132529;rank=1 scaffold_21 ensembl protein_coding_gene 388542 392328 . - . ID=Physo132530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210090;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 388542 392328 . - . ID=Physo132530;Parent=Physo132530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 388542 392328 . - . ID=Physo132530.1;Parent=Physo132530;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . CDS 388627 392328 . - 0 ID=Physo132530;Parent=Physo132530;rank=1 scaffold_21 ensembl protein_coding_gene 394108 397959 . + . ID=Physo132531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210091;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 394108 397959 . + . ID=Physo132531;Parent=Physo132531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 394108 397959 . + 0 ID=Physo132531;Parent=Physo132531;rank=1 scaffold_21 . exon 394108 397959 . + . ID=Physo132531.1;Parent=Physo132531;constitutive=1;rank=1 scaffold_21 . biological_region 399480 399484 0.999 + . logic_name=eponine scaffold_21 . biological_region 400123 400126 0.999 + . logic_name=eponine scaffold_21 . repeat_region 400255 400274 . ? . description=trf scaffold_21 . biological_region 402818 402818 0.999 + . logic_name=eponine scaffold_21 . biological_region 403070 403072 0.999 + . logic_name=eponine scaffold_21 . repeat_region 405551 405576 . ? . description=trf scaffold_21 . repeat_region 407593 407635 . ? . description=trf scaffold_21 . repeat_region 407596 407634 . ? . description=trf scaffold_21 . repeat_region 407605 407643 . ? . description=trf scaffold_21 . biological_region 408013 408018 0.999 - . logic_name=eponine scaffold_21 . biological_region 408297 408302 0.999 + . logic_name=eponine scaffold_21 . biological_region 408381 408385 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 403562 404451 . + . ID=Physo132532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210092;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 403562 404451 . + . ID=Physo132532;Parent=Physo132532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 403562 404451 . + . ID=Physo132532.1;Parent=Physo132532;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 403563 404450 . + 0 ID=Physo132532;Parent=Physo132532;rank=1 scaffold_21 ensembl protein_coding_gene 407884 409393 . - . ID=Physo132533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210093;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 407884 409393 . - . ID=Physo132533;Parent=Physo132533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 407884 408230 . - 0 ID=Physo132533;Parent=Physo132533;rank=3 scaffold_21 . exon 407884 408230 . - . ID=Physo132533.3;Parent=Physo132533;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 408290 408879 . - 0 ID=Physo132533;Parent=Physo132533;rank=2 scaffold_21 . exon 408290 408879 . - . ID=Physo132533.2;Parent=Physo132533;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 408933 409393 . - 0 ID=Physo132533;Parent=Physo132533;rank=1 scaffold_21 . repeat_region 412449 412557 . ? . description=dust scaffold_21 . repeat_region 412451 412557 . + . description=(GA)n scaffold_21 . repeat_region 413483 413494 . ? . description=dust scaffold_21 . repeat_region 416797 416809 . ? . description=dust scaffold_21 . exon 408933 409393 . - . ID=Physo132533.1;Parent=Physo132533;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 413748 416242 . - . ID=Physo132534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210094;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 413748 416242 . - . ID=Physo132534;Parent=Physo132534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 413748 415320 . - 0 ID=Physo132534;Parent=Physo132534;rank=3 scaffold_21 . exon 413748 415320 . - . ID=Physo132534.3;Parent=Physo132534;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 415613 416141 . - 0 ID=Physo132534;Parent=Physo132534;rank=2 scaffold_21 . exon 415613 416141 . - . ID=Physo132534.2;Parent=Physo132534;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 416170 416242 . - 0 ID=Physo132534;Parent=Physo132534;rank=1 scaffold_21 . exon 416170 416242 . - . ID=Physo132534.1;Parent=Physo132534;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . biological_region 420420 420425 0.999 + . logic_name=eponine scaffold_21 . biological_region 421696 421698 0.999 + . logic_name=eponine scaffold_21 . biological_region 421741 421747 0.999 + . logic_name=eponine scaffold_21 . biological_region 421910 421916 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 420462 421883 . - . ID=Physo132535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210095;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 420462 421883 . - . ID=Physo132535;Parent=Physo132535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 420462 421883 . - 0 ID=Physo132535;Parent=Physo132535;rank=1 scaffold_21 . exon 420462 421883 . - . ID=Physo132535.1;Parent=Physo132535;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 428290 430035 . - . ID=Physo156521;biotype=protein_coding;external_name=C_scaffold_21000011;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 428290 430035 . - . ID=Physo156521;Parent=Physo156521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 428290 428842 . - 0 ID=Physo156521;Parent=Physo156521;rank=2 scaffold_21 . exon 428290 428842 . - . ID=Physo156521.2;Parent=Physo156521;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 428942 430035 . - 0 ID=Physo156521;Parent=Physo156521;rank=1 scaffold_21 . repeat_region 430844 430874 . ? . description=trf scaffold_21 ensembl protein_coding_gene 431663 432643 . - . ID=Physo132537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210097;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 431663 432643 . - . ID=Physo132537;Parent=Physo132537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 431663 432643 . - 0 ID=Physo132537;Parent=Physo132537;rank=1 scaffold_21 . exon 431663 432643 . - . ID=Physo132537.1;Parent=Physo132537;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 435575 437203 . + . ID=Physo132538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210098;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 435575 437203 . + . ID=Physo132538;Parent=Physo132538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 435575 437203 . + 0 ID=Physo132538;Parent=Physo132538;rank=1 scaffold_21 . exon 435575 437203 . + . ID=Physo132538.1;Parent=Physo132538;constitutive=1;rank=1 scaffold_21 . exon 428942 430035 . - . ID=Physo156521.1;Parent=Physo156521;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . repeat_region 443957 443965 . ? . description=dust scaffold_21 . repeat_region 444305 444321 . ? . description=dust scaffold_21 . biological_region 449469 449471 0.999 + . logic_name=eponine scaffold_21 . biological_region 450242 450249 0.999 - . logic_name=eponine scaffold_21 . biological_region 450513 450517 0.999 - . logic_name=eponine scaffold_21 . biological_region 450533 450534 0.999 - . logic_name=eponine scaffold_21 . biological_region 450536 450540 0.999 + . logic_name=eponine scaffold_21 . biological_region 451765 451768 0.999 + . logic_name=eponine scaffold_21 . biological_region 451793 451794 0.999 - . logic_name=eponine scaffold_21 . repeat_region 454752 454815 . ? . description=trf scaffold_21 . biological_region 457622 457627 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 449649 450673 . + . ID=Physo132539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210099;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 449649 450673 . + . ID=Physo132539;Parent=Physo132539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 449649 450673 . + . ID=Physo132539.1;Parent=Physo132539;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 449657 450673 . + 0 ID=Physo132539;Parent=Physo132539;rank=1 scaffold_21 ensembl protein_coding_gene 451984 452364 . + . ID=Physo132540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210100;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 451984 452364 . + . ID=Physo132540;Parent=Physo132540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 451984 452364 . + 0 ID=Physo132540;Parent=Physo132540;rank=1 scaffold_21 . exon 451984 452364 . + . ID=Physo132540.1;Parent=Physo132540;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 454484 455188 . + . ID=Physo132541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210101;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 454484 455188 . + . ID=Physo132541;Parent=Physo132541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 454484 455188 . + . ID=Physo132541.1;Parent=Physo132541;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 454496 455188 . + 0 ID=Physo132541;Parent=Physo132541;rank=1 scaffold_21 ensembl protein_coding_gene 455269 455673 . - . ID=Physo132542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210102;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 455269 455673 . - . ID=Physo132542;Parent=Physo132542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 455269 455673 . - 0 ID=Physo132542;Parent=Physo132542;rank=1 scaffold_21 . exon 455269 455673 . - . ID=Physo132542.1;Parent=Physo132542;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 457053 457665 . - . ID=Physo132543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210103;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 457053 457665 . - . ID=Physo132543;Parent=Physo132543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 457053 457665 . - . ID=Physo132543.1;Parent=Physo132543;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 457232 457633 . - 0 ID=Physo132543;Parent=Physo132543;rank=1 scaffold_21 . repeat_region 461700 461707 . ? . description=dust scaffold_21 . repeat_region 464286 464293 . ? . description=dust scaffold_21 . repeat_region 466885 467480 . + . description=Gypsy-2-I_PI-int scaffold_21 ensembl protein_coding_gene 458874 460249 . + . ID=Physo132544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210104;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 458874 460249 . + . ID=Physo132544;Parent=Physo132544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 458874 458966 . + 0 ID=Physo132544;Parent=Physo132544;rank=1 scaffold_21 . exon 458874 458966 . + . ID=Physo132544.1;Parent=Physo132544;constitutive=1;rank=1 scaffold_21 . CDS 459031 459075 . + 0 ID=Physo132544;Parent=Physo132544;rank=2 scaffold_21 . exon 459031 459075 . + . ID=Physo132544.2;Parent=Physo132544;constitutive=1;rank=2 scaffold_21 . CDS 459280 459337 . + 0 ID=Physo132544;Parent=Physo132544;rank=3 scaffold_21 . exon 459280 459337 . + . ID=Physo132544.3;Parent=Physo132544;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_21 . CDS 459402 460249 . + 0 ID=Physo132544;Parent=Physo132544;rank=4 scaffold_21 . exon 459402 460249 . + . ID=Physo132544.4;Parent=Physo132544;constitutive=1;ensembl_phase=1;rank=4 scaffold_21 ensembl protein_coding_gene 460349 461214 . - . ID=Physo132545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210105;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 460349 461214 . - . ID=Physo132545;Parent=Physo132545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 460349 460456 . - 0 ID=Physo132545;Parent=Physo132545;rank=4 scaffold_21 . exon 460349 460456 . - . ID=Physo132545.4;Parent=Physo132545;constitutive=1;rank=4 scaffold_21 . CDS 460524 460722 . - 0 ID=Physo132545;Parent=Physo132545;rank=3 scaffold_21 . exon 460524 460722 . - . ID=Physo132545.3;Parent=Physo132545;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 460797 461043 . - 0 ID=Physo132545;Parent=Physo132545;rank=2 scaffold_21 . exon 460797 461043 . - . ID=Physo132545.2;Parent=Physo132545;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 461106 461214 . - 0 ID=Physo132545;Parent=Physo132545;rank=1 scaffold_21 . exon 461106 461214 . - . ID=Physo132545.1;Parent=Physo132545;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 461643 462177 . - . ID=Physo132546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210106;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 461643 462177 . - . ID=Physo132546;Parent=Physo132546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 461643 462177 . - . ID=Physo132546.1;Parent=Physo132546;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 461759 462175 . - 0 ID=Physo132546;Parent=Physo132546;rank=1 scaffold_21 . biological_region 468928 468931 0.999 + . logic_name=eponine scaffold_21 . repeat_region 475572 475653 . ? . description=trf scaffold_21 . biological_region 478175 478178 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 468347 469886 . + . ID=Physo132547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210107;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 468347 469886 . + . ID=Physo132547;Parent=Physo132547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 468347 468749 . + 0 ID=Physo132547;Parent=Physo132547;rank=1 scaffold_21 . exon 468347 468749 . + . ID=Physo132547.1;Parent=Physo132547;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 468871 469138 . + 0 ID=Physo132547;Parent=Physo132547;rank=2 scaffold_21 . exon 468871 469138 . + . ID=Physo132547.2;Parent=Physo132547;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 469210 469462 . + 0 ID=Physo132547;Parent=Physo132547;rank=3 scaffold_21 . exon 469210 469462 . + . ID=Physo132547.3;Parent=Physo132547;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 469705 469800 . + 0 ID=Physo132547;Parent=Physo132547;rank=4 scaffold_21 . exon 469705 469800 . + . ID=Physo132547.4;Parent=Physo132547;constitutive=1;rank=4 scaffold_21 . CDS 469872 469886 . + 0 ID=Physo132547;Parent=Physo132547;rank=5 scaffold_21 . exon 469872 469886 . + . ID=Physo132547.5;Parent=Physo132547;constitutive=1;rank=5 scaffold_21 ensembl protein_coding_gene 471712 472734 . + . ID=Physo132548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210108;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 471712 472734 . + . ID=Physo132548;Parent=Physo132548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 471712 471946 . + 0 ID=Physo132548;Parent=Physo132548;rank=1 scaffold_21 . exon 471712 471946 . + . ID=Physo132548.1;Parent=Physo132548;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 472316 472558 . + 0 ID=Physo132548;Parent=Physo132548;rank=2 scaffold_21 . exon 472316 472558 . + . ID=Physo132548.2;Parent=Physo132548;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 472667 472734 . + 0 ID=Physo132548;Parent=Physo132548;rank=3 scaffold_21 . exon 472667 472734 . + . ID=Physo132548.3;Parent=Physo132548;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 ensembl protein_coding_gene 477987 480915 . + . ID=Physo132550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210110;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 477987 480915 . + . ID=Physo132550;Parent=Physo132550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 477987 480156 . + 0 ID=Physo132550;Parent=Physo132550;rank=1 scaffold_21 . exon 477987 480156 . + . ID=Physo132550.1;Parent=Physo132550;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 480253 480318 . + 0 ID=Physo132550;Parent=Physo132550;rank=2 scaffold_21 . CDS 480389 480915 . + 0 ID=Physo132550;Parent=Physo132550;rank=3 scaffold_21 ensembl protein_coding_gene 476442 477602 . - . ID=Physo156523;biotype=protein_coding;external_name=C_scaffold_21000013;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 476442 477602 . - . ID=Physo156523;Parent=Physo156523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 476442 476519 . - 0 ID=Physo156523;Parent=Physo156523;rank=5 scaffold_21 . exon 476442 476519 . - . ID=Physo156523.5;Parent=Physo156523;constitutive=1;rank=5 scaffold_21 . CDS 476605 476800 . - 0 ID=Physo156523;Parent=Physo156523;rank=4 scaffold_21 . exon 476605 476800 . - . ID=Physo156523.4;Parent=Physo156523;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 476899 477103 . - 0 ID=Physo156523;Parent=Physo156523;rank=3 scaffold_21 . exon 476899 477103 . - . ID=Physo156523.3;Parent=Physo156523;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . CDS 477182 477353 . - 0 ID=Physo156523;Parent=Physo156523;rank=2 scaffold_21 . exon 477182 477353 . - . ID=Physo156523.2;Parent=Physo156523;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 477429 477602 . - 0 ID=Physo156523;Parent=Physo156523;rank=1 scaffold_21 . exon 477429 477602 . - . ID=Physo156523.1;Parent=Physo156523;constitutive=1;rank=1 scaffold_21 . repeat_region 487060 487069 . ? . description=dust scaffold_21 . repeat_region 487322 487371 . ? . description=dust scaffold_21 . repeat_region 487503 487511 . ? . description=dust scaffold_21 . exon 480253 480318 . + . ID=Physo132550.2;Parent=Physo132550;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . exon 480389 480915 . + . ID=Physo132550.3;Parent=Physo132550;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 ensembl protein_coding_gene 481001 481646 . - . ID=Physo132551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210111;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 481001 481646 . - . ID=Physo132551;Parent=Physo132551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 481001 481154 . - 0 ID=Physo132551;Parent=Physo132551;rank=3 scaffold_21 . exon 481001 481154 . - . ID=Physo132551.3;Parent=Physo132551;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 481227 481440 . - 0 ID=Physo132551;Parent=Physo132551;rank=2 scaffold_21 . exon 481227 481440 . - . ID=Physo132551.2;Parent=Physo132551;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 481508 481646 . - 0 ID=Physo132551;Parent=Physo132551;rank=1 scaffold_21 . exon 481508 481646 . - . ID=Physo132551.1;Parent=Physo132551;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 482100 483527 . - . ID=Physo156526;biotype=protein_coding;external_name=C_scaffold_21000016;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 482100 483527 . - . ID=Physo156526;Parent=Physo156526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 482100 482387 . - 0 ID=Physo156526;Parent=Physo156526;rank=2 scaffold_21 . exon 482100 482387 . - . ID=Physo156526.2;Parent=Physo156526;constitutive=1;rank=2 scaffold_21 . CDS 482415 483527 . - 0 ID=Physo156526;Parent=Physo156526;rank=1 scaffold_21 . exon 482415 483527 . - . ID=Physo156526.1;Parent=Physo156526;constitutive=1;rank=1 scaffold_21 . biological_region 491722 491728 0.999 - . logic_name=eponine scaffold_21 . biological_region 491742 491745 0.999 - . logic_name=eponine scaffold_21 . repeat_region 493503 495787 . - . description=GypsyPi-1c_I-int scaffold_21 . biological_region 494257 494259 0.999 + . logic_name=eponine scaffold_21 . biological_region 496336 496339 0.999 + . logic_name=eponine scaffold_21 . biological_region 496403 496403 0.999 - . logic_name=eponine scaffold_21 . biological_region 496545 496548 0.999 + . logic_name=eponine scaffold_21 . biological_region 496576 496578 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 491343 492875 . + . ID=Physo132553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210113;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 491343 492875 . + . ID=Physo132553;Parent=Physo132553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 491343 492386 . + 0 ID=Physo132553;Parent=Physo132553;rank=1 scaffold_21 . exon 491343 492386 . + . ID=Physo132553.1;Parent=Physo132553;constitutive=1;rank=1 scaffold_21 . CDS 492560 492616 . + 0 ID=Physo132553;Parent=Physo132553;rank=2 scaffold_21 . exon 492560 492616 . + . ID=Physo132553.2;Parent=Physo132553;constitutive=1;rank=2 scaffold_21 . CDS 492681 492875 . + 0 ID=Physo132553;Parent=Physo132553;rank=3 scaffold_21 . exon 492681 492875 . + . ID=Physo132553.3;Parent=Physo132553;constitutive=1;rank=3 scaffold_21 ensembl protein_coding_gene 493075 495963 . - . ID=Physo132554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210114;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 493075 495963 . - . ID=Physo132554;Parent=Physo132554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 493075 493320 . - 0 ID=Physo132554;Parent=Physo132554;rank=8 scaffold_21 . exon 493075 493320 . - . ID=Physo132554.8;Parent=Physo132554;constitutive=1;rank=8 scaffold_21 . CDS 493343 493388 . - 0 ID=Physo132554;Parent=Physo132554;rank=7 scaffold_21 . exon 493343 493388 . - . ID=Physo132554.7;Parent=Physo132554;constitutive=1;ensembl_phase=2;rank=7 scaffold_21 . CDS 493496 493844 . - 0 ID=Physo132554;Parent=Physo132554;rank=6 scaffold_21 . exon 493496 493844 . - . ID=Physo132554.6;Parent=Physo132554;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_21 . CDS 494048 494064 . - 0 ID=Physo132554;Parent=Physo132554;rank=5 scaffold_21 . exon 494048 494064 . - . ID=Physo132554.5;Parent=Physo132554;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_21 . CDS 494115 494459 . - 0 ID=Physo132554;Parent=Physo132554;rank=4 scaffold_21 . exon 494115 494459 . - . ID=Physo132554.4;Parent=Physo132554;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . CDS 494590 494690 . - 0 ID=Physo132554;Parent=Physo132554;rank=3 scaffold_21 . exon 494590 494690 . - . ID=Physo132554.3;Parent=Physo132554;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_21 . CDS 494850 495404 . - 0 ID=Physo132554;Parent=Physo132554;rank=2 scaffold_21 . exon 494850 495404 . - . ID=Physo132554.2;Parent=Physo132554;constitutive=1;rank=2 scaffold_21 . CDS 495655 495963 . - 0 ID=Physo132554;Parent=Physo132554;rank=1 scaffold_21 . exon 495655 495963 . - . ID=Physo132554.1;Parent=Physo132554;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 497988 498371 . + . ID=Physo132555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210115;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 497988 498371 . + . ID=Physo132555;Parent=Physo132555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 497988 498371 . + 0 ID=Physo132555;Parent=Physo132555;rank=1 scaffold_21 . exon 497988 498371 . + . ID=Physo132555.1;Parent=Physo132555;constitutive=1;rank=1 scaffold_21 . repeat_region 502633 502652 . ? . description=trf scaffold_21 . repeat_region 506657 506696 . ? . description=trf scaffold_21 ensembl protein_coding_gene 498974 502879 . + . ID=Physo132556;biotype=protein_coding;description=Reverse transcriptase [Source:UniProtKB/TrEMBL%3BAcc:Q0Q538];external_name=estExt_fgenesh1_pg.C_210116;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 498974 502879 . + . ID=Physo132556;Parent=Physo132556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 498974 501219 . + 0 ID=Physo132556;Parent=Physo132556;rank=1 scaffold_21 . exon 498974 501219 . + . ID=Physo132556.1;Parent=Physo132556;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 501293 501722 . + 0 ID=Physo132556;Parent=Physo132556;rank=2 scaffold_21 . exon 501293 501722 . + . ID=Physo132556.2;Parent=Physo132556;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 501827 502469 . + 0 ID=Physo132556;Parent=Physo132556;rank=3 scaffold_21 . exon 501827 502469 . + . ID=Physo132556.3;Parent=Physo132556;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_21 . CDS 502719 502879 . + 0 ID=Physo132556;Parent=Physo132556;rank=4 scaffold_21 . exon 502719 502879 . + . ID=Physo132556.4;Parent=Physo132556;constitutive=1;ensembl_phase=1;rank=4 scaffold_21 ensembl protein_coding_gene 503682 504659 . - . ID=Physo132557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210117;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 503682 504659 . - . ID=Physo132557;Parent=Physo132557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 503682 503705 . - 0 ID=Physo132557;Parent=Physo132557;rank=4 scaffold_21 . exon 503682 503705 . - . ID=Physo132557.4;Parent=Physo132557;constitutive=1;rank=4 scaffold_21 . CDS 503791 504030 . - 0 ID=Physo132557;Parent=Physo132557;rank=3 scaffold_21 . exon 503791 504030 . - . ID=Physo132557.3;Parent=Physo132557;constitutive=1;rank=3 scaffold_21 . CDS 504066 504516 . - 0 ID=Physo132557;Parent=Physo132557;rank=2 scaffold_21 . exon 504066 504516 . - . ID=Physo132557.2;Parent=Physo132557;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 504541 504659 . - 0 ID=Physo132557;Parent=Physo132557;rank=1 scaffold_21 . exon 504541 504659 . - . ID=Physo132557.1;Parent=Physo132557;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . repeat_region 508199 508254 . ? . description=dust scaffold_21 . repeat_region 509741 509754 . ? . description=dust scaffold_21 . biological_region 510646 510647 0.999 + . logic_name=eponine scaffold_21 . repeat_region 512915 512922 . ? . description=dust scaffold_21 . biological_region 513066 513066 0.999 - . logic_name=eponine scaffold_21 ensembl tRNA_gene 510462 510531 . - . ID=EPrPSOG00000000209;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_21 ensembl transcript 510462 510531 . - . ID=EPrPSOT00000000209;Parent=EPrPSOG00000000209;biotype=tRNA;logic_name=ncrna_eg scaffold_21 . exon 510462 510531 . - . ID=EPrPSOE00000000209;Parent=EPrPSOT00000000209;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . repeat_region 528710 528717 . ? . description=dust scaffold_21 . repeat_region 528892 528904 . ? . description=dust scaffold_21 . biological_region 535827 535830 0.999 - . logic_name=eponine scaffold_21 . biological_region 535863 535867 0.999 + . logic_name=eponine scaffold_21 . biological_region 535922 535926 0.999 + . logic_name=eponine scaffold_21 . biological_region 535981 535986 0.999 + . logic_name=eponine scaffold_21 . biological_region 536245 536253 0.999 - . logic_name=eponine scaffold_21 . biological_region 536313 536317 0.999 - . logic_name=eponine scaffold_21 . biological_region 536323 536325 0.999 + . logic_name=eponine scaffold_21 . biological_region 536797 536798 0.999 + . logic_name=eponine scaffold_21 . biological_region 537159 537159 0.999 - . logic_name=eponine scaffold_21 . biological_region 537304 537308 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 535837 537543 . + . ID=Physo132558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210118;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 535837 537543 . + . ID=Physo132558;Parent=Physo132558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 535837 537543 . + 0 ID=Physo132558;Parent=Physo132558;rank=1 scaffold_21 . exon 535837 537543 . + . ID=Physo132558.1;Parent=Physo132558;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 537769 543129 . + . ID=Physo132559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210119;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 537769 543129 . + . ID=Physo132559;Parent=Physo132559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 537769 543129 . + 0 ID=Physo132559;Parent=Physo132559;rank=1 scaffold_21 . exon 537769 543129 . + . ID=Physo132559.1;Parent=Physo132559;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 544162 548265 . + . ID=Physo132560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210120;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 544162 548265 . + . ID=Physo132560;Parent=Physo132560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 544162 548265 . + 0 ID=Physo132560;Parent=Physo132560;rank=1 scaffold_21 . exon 544162 548265 . + . ID=Physo132560.1;Parent=Physo132560;constitutive=1;rank=1 scaffold_21 . biological_region 551100 551106 0.999 + . logic_name=eponine scaffold_21 . biological_region 551163 551169 0.999 + . logic_name=eponine scaffold_21 . biological_region 552408 552408 0.999 + . logic_name=eponine scaffold_21 . repeat_region 553036 553044 . ? . description=dust scaffold_21 . biological_region 554067 554068 0.999 - . logic_name=eponine scaffold_21 . biological_region 554805 554807 0.999 + . logic_name=eponine scaffold_21 . biological_region 554976 554979 0.999 - . logic_name=eponine scaffold_21 . biological_region 555055 555059 0.999 - . logic_name=eponine scaffold_21 . biological_region 555075 555078 0.999 - . logic_name=eponine scaffold_21 . biological_region 555164 555170 0.999 - . logic_name=eponine scaffold_21 . biological_region 555382 555387 0.999 - . logic_name=eponine scaffold_21 . biological_region 556624 556625 0.999 + . logic_name=eponine scaffold_21 . biological_region 556763 556767 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 550984 551941 . - . ID=Physo132561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210121;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 550984 551941 . - . ID=Physo132561;Parent=Physo132561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 550984 551673 . - 0 ID=Physo132561;Parent=Physo132561;rank=2 scaffold_21 . exon 550984 551673 . - . ID=Physo132561.2;Parent=Physo132561;constitutive=1;rank=2 scaffold_21 . CDS 551729 551941 . - 0 ID=Physo132561;Parent=Physo132561;rank=1 scaffold_21 . exon 551729 551941 . - . ID=Physo132561.1;Parent=Physo132561;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 554750 555784 . + . ID=Physo132562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210122;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 554750 555784 . + . ID=Physo132562;Parent=Physo132562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 554750 555706 . + 0 ID=Physo132562;Parent=Physo132562;rank=1 scaffold_21 . exon 554750 555784 . + . ID=Physo132562.1;Parent=Physo132562;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 556607 558650 . + . ID=Physo132563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210123;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 556607 558650 . + . ID=Physo132563;Parent=Physo132563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 556607 557095 . + 0 ID=Physo132563;Parent=Physo132563;rank=1 scaffold_21 . exon 556607 557095 . + . ID=Physo132563.1;Parent=Physo132563;constitutive=1;rank=1 scaffold_21 . CDS 557172 558650 . + 0 ID=Physo132563;Parent=Physo132563;rank=2 scaffold_21 . exon 557172 558650 . + . ID=Physo132563.2;Parent=Physo132563;constitutive=1;rank=2 scaffold_21 . repeat_region 561114 561145 . ? . description=trf scaffold_21 . repeat_region 562142 562233 . ? . description=trf scaffold_21 . repeat_region 562142 562236 . ? . description=trf scaffold_21 . repeat_region 565638 565667 . ? . description=trf scaffold_21 ensembl protein_coding_gene 559739 560703 . + . ID=Physo132564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210124;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 559739 560703 . + . ID=Physo132564;Parent=Physo132564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 559739 560669 . + 0 ID=Physo132564;Parent=Physo132564;rank=1 scaffold_21 . exon 559739 560669 . + . ID=Physo132564.1;Parent=Physo132564;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 560699 560703 . + 0 ID=Physo132564;Parent=Physo132564;rank=2 scaffold_21 . exon 560699 560703 . + . ID=Physo132564.2;Parent=Physo132564;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 ensembl protein_coding_gene 565910 567444 . + . ID=Physo132565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210125;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 565910 567444 . + . ID=Physo132565;Parent=Physo132565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 565910 566045 . + 0 ID=Physo132565;Parent=Physo132565;rank=1 scaffold_21 . exon 565910 566045 . + . ID=Physo132565.1;Parent=Physo132565;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 566196 566746 . + 0 ID=Physo132565;Parent=Physo132565;rank=2 scaffold_21 . exon 566196 566746 . + . ID=Physo132565.2;Parent=Physo132565;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 566789 567415 . + 0 ID=Physo132565;Parent=Physo132565;rank=3 scaffold_21 . exon 566789 567444 . + . ID=Physo132565.3;Parent=Physo132565;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_21 . biological_region 572369 572371 0.999 + . logic_name=eponine scaffold_21 . biological_region 572393 572398 0.999 - . logic_name=eponine scaffold_21 . biological_region 572769 572771 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 572545 574764 . + . ID=Physo114615;biotype=protein_coding;external_name=estExt_Genewise1.C_210048;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 572545 574764 . + . ID=Physo114615;Parent=Physo114615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 572545 574764 . + . ID=Physo114615.1;Parent=Physo114615;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 572586 574664 . + 0 ID=Physo114615;Parent=Physo114615;rank=1 scaffold_21 ensembl protein_coding_gene 574815 575190 . - . ID=Physo114620;biotype=protein_coding;external_name=estExt_Genewise1.C_210053;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 574815 575190 . - . ID=Physo114620;Parent=Physo114620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 574815 574937 . - . ID=Physo114620.2;Parent=Physo114620;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_21 . CDS 574816 574937 . - 0 ID=Physo114620;Parent=Physo114620;rank=2 scaffold_21 . CDS 575026 575188 . - 0 ID=Physo114620;Parent=Physo114620;rank=1 scaffold_21 . exon 575026 575190 . - . ID=Physo114620.1;Parent=Physo114620;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 570384 571370 . + . ID=Physo132566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210126;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 570384 571370 . + . ID=Physo132566;Parent=Physo132566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 570384 571370 . + 0 ID=Physo132566;Parent=Physo132566;rank=1 scaffold_21 . exon 570384 571370 . + . ID=Physo132566.1;Parent=Physo132566;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 575859 576849 . + . ID=Physo132568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210128;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 575859 576849 . + . ID=Physo132568;Parent=Physo132568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 575859 576410 . + 0 ID=Physo132568;Parent=Physo132568;rank=1 scaffold_21 . exon 575859 576410 . + . ID=Physo132568.1;Parent=Physo132568;constitutive=1;rank=1 scaffold_21 . CDS 576475 576849 . + 0 ID=Physo132568;Parent=Physo132568;rank=2 scaffold_21 . exon 576475 576849 . + . ID=Physo132568.2;Parent=Physo132568;constitutive=1;rank=2 scaffold_21 . repeat_region 580917 581137 . ? . description=trf scaffold_21 ensembl protein_coding_gene 579522 580469 . + . ID=Physo108635;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_210009;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 579522 580469 . + . ID=Physo108635;Parent=Physo108635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 579522 580469 . + . ID=Physo108635.1;Parent=Physo108635;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 579585 580469 . + 0 ID=Physo108635;Parent=Physo108635;rank=1 scaffold_21 ensembl protein_coding_gene 583223 584421 . - . ID=Physo132570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210130;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 583223 584421 . - . ID=Physo132570;Parent=Physo132570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 583223 584362 . - 0 ID=Physo132570;Parent=Physo132570;rank=1 scaffold_21 . exon 583223 584421 . - . ID=Physo132570.1;Parent=Physo132570;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 585567 592028 . + . ID=Physo132571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210131;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 585567 592028 . + . ID=Physo132571;Parent=Physo132571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 585567 586132 . + 0 ID=Physo132571;Parent=Physo132571;rank=1 scaffold_21 . exon 585567 586132 . + . ID=Physo132571.1;Parent=Physo132571;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 586210 587280 . + 0 ID=Physo132571;Parent=Physo132571;rank=2 scaffold_21 . exon 586210 587280 . + . ID=Physo132571.2;Parent=Physo132571;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 587364 588818 . + 0 ID=Physo132571;Parent=Physo132571;rank=3 scaffold_21 . exon 587364 588818 . + . ID=Physo132571.3;Parent=Physo132571;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_21 . CDS 589272 591327 . + 0 ID=Physo132571;Parent=Physo132571;rank=4 scaffold_21 . CDS 591400 591438 . + 0 ID=Physo132571;Parent=Physo132571;rank=5 scaffold_21 . CDS 591595 591894 . + 0 ID=Physo132571;Parent=Physo132571;rank=6 scaffold_21 . CDS 591972 592028 . + 0 ID=Physo132571;Parent=Physo132571;rank=7 scaffold_21 . biological_region 588049 588054 0.999 - . logic_name=eponine scaffold_21 . biological_region 588087 588088 0.999 + . logic_name=eponine scaffold_21 . repeat_region 589024 589049 . ? . description=dust scaffold_21 . biological_region 593257 593258 0.999 + . logic_name=eponine scaffold_21 . biological_region 593386 593386 0.999 - . logic_name=eponine scaffold_21 . biological_region 594297 594300 0.999 + . logic_name=eponine scaffold_21 . biological_region 594527 594527 0.999 - . logic_name=eponine scaffold_21 . biological_region 594909 594911 0.999 - . logic_name=eponine scaffold_21 . repeat_region 596617 596628 . ? . description=dust scaffold_21 . biological_region 597711 597713 0.999 + . logic_name=eponine scaffold_21 . biological_region 597717 597724 0.999 - . logic_name=eponine scaffold_21 . biological_region 597722 597727 0.999 + . logic_name=eponine scaffold_21 . biological_region 597776 597783 0.999 - . logic_name=eponine scaffold_21 . exon 589272 591327 . + . ID=Physo132571.4;Parent=Physo132571;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . exon 591400 591438 . + . ID=Physo132571.5;Parent=Physo132571;constitutive=1;rank=5 scaffold_21 . exon 591595 591894 . + . ID=Physo132571.6;Parent=Physo132571;constitutive=1;rank=6 scaffold_21 . exon 591972 592028 . + . ID=Physo132571.7;Parent=Physo132571;constitutive=1;rank=7 scaffold_21 ensembl protein_coding_gene 592339 593495 . - . ID=Physo132572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210132;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 592339 593495 . - . ID=Physo132572;Parent=Physo132572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 592339 592371 . - 0 ID=Physo132572;Parent=Physo132572;rank=2 scaffold_21 . exon 592339 592371 . - . ID=Physo132572.2;Parent=Physo132572;constitutive=1;rank=2 scaffold_21 . CDS 592395 593495 . - 0 ID=Physo132572;Parent=Physo132572;rank=1 scaffold_21 . exon 592395 593495 . - . ID=Physo132572.1;Parent=Physo132572;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 594557 596303 . + . ID=Physo132573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210133;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 594557 596303 . + . ID=Physo132573;Parent=Physo132573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 594557 594597 . + . ID=Physo132573.1;Parent=Physo132573;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . exon 594690 596303 . + . ID=Physo132573.2;Parent=Physo132573;constitutive=1;ensembl_phase=-1;rank=2 scaffold_21 . CDS 594729 596303 . + 0 ID=Physo132573;Parent=Physo132573;rank=1 scaffold_21 ensembl protein_coding_gene 596547 597902 . - . ID=Physo132574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210134;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 596547 597902 . - . ID=Physo132574;Parent=Physo132574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 596547 596610 . - 0 ID=Physo132574;Parent=Physo132574;rank=5 scaffold_21 . exon 596547 596610 . - . ID=Physo132574.5;Parent=Physo132574;constitutive=1;ensembl_phase=2;rank=5 scaffold_21 . CDS 596678 596784 . - 0 ID=Physo132574;Parent=Physo132574;rank=4 scaffold_21 . exon 596678 596784 . - . ID=Physo132574.4;Parent=Physo132574;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_21 . CDS 596868 596983 . - 0 ID=Physo132574;Parent=Physo132574;rank=3 scaffold_21 . exon 596868 596983 . - . ID=Physo132574.3;Parent=Physo132574;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 597068 597490 . - 0 ID=Physo132574;Parent=Physo132574;rank=2 scaffold_21 . exon 597068 597490 . - . ID=Physo132574.2;Parent=Physo132574;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 597575 597902 . - 0 ID=Physo132574;Parent=Physo132574;rank=1 scaffold_21 . exon 597575 597902 . - . ID=Physo132574.1;Parent=Physo132574;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 599535 599922 . - . ID=Physo114631;biotype=protein_coding;external_name=estExt_Genewise1.C_210064;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 599535 599922 . - . ID=Physo114631;Parent=Physo114631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 599535 599922 . - . ID=Physo114631.1;Parent=Physo114631;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 599735 599920 . - 0 ID=Physo114631;Parent=Physo114631;rank=1 scaffold_21 ensembl protein_coding_gene 603425 604897 . + . ID=Physo132575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210135;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 603425 604897 . + . ID=Physo132575;Parent=Physo132575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 603425 603623 . + 0 ID=Physo132575;Parent=Physo132575;rank=1 scaffold_21 . exon 603425 603623 . + . ID=Physo132575.1;Parent=Physo132575;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 603763 604218 . + 0 ID=Physo132575;Parent=Physo132575;rank=2 scaffold_21 . exon 603763 604218 . + . ID=Physo132575.2;Parent=Physo132575;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 604347 604560 . + 0 ID=Physo132575;Parent=Physo132575;rank=3 scaffold_21 . exon 604347 604560 . + . ID=Physo132575.3;Parent=Physo132575;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . CDS 604603 604897 . + 0 ID=Physo132575;Parent=Physo132575;rank=4 scaffold_21 . exon 604603 604897 . + . ID=Physo132575.4;Parent=Physo132575;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 ensembl protein_coding_gene 607122 611010 . + . ID=Physo132576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210136;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 607122 611010 . + . ID=Physo132576;Parent=Physo132576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 607122 607641 . + 0 ID=Physo132576;Parent=Physo132576;rank=1 scaffold_21 . exon 607122 607641 . + . ID=Physo132576.1;Parent=Physo132576;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 607857 610001 . + 0 ID=Physo132576;Parent=Physo132576;rank=2 scaffold_21 . CDS 610300 610973 . + 0 ID=Physo132576;Parent=Physo132576;rank=3 scaffold_21 . CDS 610999 611010 . + 0 ID=Physo132576;Parent=Physo132576;rank=4 scaffold_21 . biological_region 607843 607845 0.999 + . logic_name=eponine scaffold_21 . biological_region 607909 607911 0.999 - . logic_name=eponine scaffold_21 . repeat_region 608443 609818 . + . description=GypsyPi-1c_I-int scaffold_21 . repeat_region 610006 610266 . - . description=GypsyPi-1c_I-int scaffold_21 . repeat_region 610317 611076 . + . description=GypsyPi-1c_I-int scaffold_21 . biological_region 610482 610483 0.999 + . logic_name=eponine scaffold_21 . repeat_region 611198 611369 . ? . description=dust scaffold_21 . biological_region 612001 612006 0.999 + . logic_name=eponine scaffold_21 . biological_region 612054 612060 0.999 - . logic_name=eponine scaffold_21 . biological_region 612419 612419 0.999 + . logic_name=eponine scaffold_21 . biological_region 612604 612607 0.999 + . logic_name=eponine scaffold_21 . repeat_region 614341 614375 . ? . description=trf scaffold_21 . biological_region 615205 615209 0.999 + . logic_name=eponine scaffold_21 . exon 607857 610001 . + . ID=Physo132576.2;Parent=Physo132576;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . exon 610300 610973 . + . ID=Physo132576.3;Parent=Physo132576;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . exon 610999 611010 . + . ID=Physo132576.4;Parent=Physo132576;constitutive=1;rank=4 scaffold_21 ensembl protein_coding_gene 619925 622651 . + . ID=Physo132577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210137;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 619925 622651 . + . ID=Physo132577;Parent=Physo132577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 619925 621149 . + 0 ID=Physo132577;Parent=Physo132577;rank=1 scaffold_21 . exon 619925 621149 . + . ID=Physo132577.1;Parent=Physo132577;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 621200 621358 . + 0 ID=Physo132577;Parent=Physo132577;rank=2 scaffold_21 . exon 621200 621358 . + . ID=Physo132577.2;Parent=Physo132577;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 621444 622651 . + 0 ID=Physo132577;Parent=Physo132577;rank=3 scaffold_21 . exon 621444 622651 . + . ID=Physo132577.3;Parent=Physo132577;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 ensembl protein_coding_gene 624591 636038 . - . ID=Physo132578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210138;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 624591 636038 . - . ID=Physo132578;Parent=Physo132578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 624591 628667 . - 0 ID=Physo132578;Parent=Physo132578;rank=8 scaffold_21 . exon 624591 628667 . - . ID=Physo132578.8;Parent=Physo132578;constitutive=1;rank=8 scaffold_21 . CDS 629322 630006 . - 0 ID=Physo132578;Parent=Physo132578;rank=7 scaffold_21 . CDS 630191 630346 . - 0 ID=Physo132578;Parent=Physo132578;rank=6 scaffold_21 . CDS 630381 632342 . - 0 ID=Physo132578;Parent=Physo132578;rank=5 scaffold_21 . CDS 632526 632639 . - 0 ID=Physo132578;Parent=Physo132578;rank=4 scaffold_21 . CDS 632887 633042 . - 0 ID=Physo132578;Parent=Physo132578;rank=3 scaffold_21 . CDS 633077 635702 . - 0 ID=Physo132578;Parent=Physo132578;rank=2 scaffold_21 . CDS 635735 636038 . - 0 ID=Physo132578;Parent=Physo132578;rank=1 scaffold_21 . biological_region 631361 631367 0.999 + . logic_name=eponine scaffold_21 . biological_region 631852 631860 0.999 + . logic_name=eponine scaffold_21 . repeat_region 631857 631889 . ? . description=trf scaffold_21 . biological_region 631883 631888 0.999 + . logic_name=eponine scaffold_21 . biological_region 631900 631900 0.999 + . logic_name=eponine scaffold_21 . biological_region 631924 631925 0.999 + . logic_name=eponine scaffold_21 . repeat_region 632447 632496 . ? . description=dust scaffold_21 . biological_region 634057 634063 0.999 + . logic_name=eponine scaffold_21 . biological_region 634548 634556 0.999 + . logic_name=eponine scaffold_21 . repeat_region 634553 634585 . ? . description=trf scaffold_21 . biological_region 634579 634584 0.999 + . logic_name=eponine scaffold_21 . biological_region 634596 634596 0.999 + . logic_name=eponine scaffold_21 . biological_region 634620 634621 0.999 + . logic_name=eponine scaffold_21 . repeat_region 637542 637569 . ? . description=trf scaffold_21 . repeat_region 637545 637572 . ? . description=trf scaffold_21 . exon 629322 630006 . - . ID=Physo132578.7;Parent=Physo132578;constitutive=1;ensembl_phase=2;rank=7 scaffold_21 . exon 630191 630346 . - . ID=Physo132578.6;Parent=Physo132578;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_21 . exon 630381 632342 . - . ID=Physo132578.5;Parent=Physo132578;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_21 . exon 632526 632639 . - . ID=Physo132578.4;Parent=Physo132578;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . exon 632887 633042 . - . ID=Physo132578.3;Parent=Physo132578;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_21 . exon 633077 635702 . - . ID=Physo132578.2;Parent=Physo132578;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . exon 635735 636038 . - . ID=Physo132578.1;Parent=Physo132578;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 646285 648453 . - . ID=Physo108636;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_210010;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 646285 648453 . - . ID=Physo108636;Parent=Physo108636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 646285 647944 . - . ID=Physo108636.3;Parent=Physo108636;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_21 . CDS 646409 647944 . - 0 ID=Physo108636;Parent=Physo108636;rank=3 scaffold_21 . CDS 648052 648324 . - 0 ID=Physo108636;Parent=Physo108636;rank=2 scaffold_21 . CDS 648352 648453 . - 0 ID=Physo108636;Parent=Physo108636;rank=1 scaffold_21 ensembl protein_coding_gene 638146 639104 . + . ID=Physo132579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210139;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 638146 639104 . + . ID=Physo132579;Parent=Physo132579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 638146 638255 . + 0 ID=Physo132579;Parent=Physo132579;rank=1 scaffold_21 . exon 638146 638255 . + . ID=Physo132579.1;Parent=Physo132579;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 638299 638432 . + 0 ID=Physo132579;Parent=Physo132579;rank=2 scaffold_21 . exon 638299 638432 . + . ID=Physo132579.2;Parent=Physo132579;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 638496 638814 . + 0 ID=Physo132579;Parent=Physo132579;rank=3 scaffold_21 . exon 638496 638814 . + . ID=Physo132579.3;Parent=Physo132579;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . CDS 639089 639104 . + 0 ID=Physo132579;Parent=Physo132579;rank=4 scaffold_21 . exon 639089 639104 . + . ID=Physo132579.4;Parent=Physo132579;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 ensembl protein_coding_gene 640133 640578 . - . ID=Physo132580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210140;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 640133 640578 . - . ID=Physo132580;Parent=Physo132580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 640133 640179 . - 0 ID=Physo132580;Parent=Physo132580;rank=2 scaffold_21 . exon 640133 640179 . - . ID=Physo132580.2;Parent=Physo132580;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 640284 640578 . - 0 ID=Physo132580;Parent=Physo132580;rank=1 scaffold_21 . exon 640284 640578 . - . ID=Physo132580.1;Parent=Physo132580;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 645244 646124 . + . ID=Physo132581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210141;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 645244 646124 . + . ID=Physo132581;Parent=Physo132581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 645244 645670 . + 0 ID=Physo132581;Parent=Physo132581;rank=1 scaffold_21 . exon 645244 645670 . + . ID=Physo132581.1;Parent=Physo132581;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 645756 645792 . + 0 ID=Physo132581;Parent=Physo132581;rank=2 scaffold_21 . exon 645756 645792 . + . ID=Physo132581.2;Parent=Physo132581;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 645875 646124 . + 0 ID=Physo132581;Parent=Physo132581;rank=3 scaffold_21 . exon 645875 646124 . + . ID=Physo132581.3;Parent=Physo132581;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . biological_region 647758 647761 0.999 + . logic_name=eponine scaffold_21 . biological_region 648139 648140 0.999 - . logic_name=eponine scaffold_21 . biological_region 648240 648246 0.999 + . logic_name=eponine scaffold_21 . biological_region 648319 648322 0.999 - . logic_name=eponine scaffold_21 . biological_region 648405 648407 0.999 - . logic_name=eponine scaffold_21 . biological_region 648426 648428 0.999 - . logic_name=eponine scaffold_21 . biological_region 649604 649607 0.999 + . logic_name=eponine scaffold_21 . biological_region 649650 649657 0.999 - . logic_name=eponine scaffold_21 . biological_region 649715 649717 0.999 - . logic_name=eponine scaffold_21 . biological_region 650034 650036 0.999 + . logic_name=eponine scaffold_21 . biological_region 650084 650084 0.999 - . logic_name=eponine scaffold_21 . biological_region 650162 650166 0.999 - . logic_name=eponine scaffold_21 . repeat_region 650980 651180 . ? . description=trf scaffold_21 . repeat_region 653125 655447 . ? . description=dust scaffold_21 . exon 648052 648324 . - . ID=Physo108636.2;Parent=Physo108636;constitutive=1;rank=2 scaffold_21 . exon 648352 648453 . - . ID=Physo108636.1;Parent=Physo108636;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 648924 652727 . - . ID=Physo132583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210143;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 648924 652727 . - . ID=Physo132583;Parent=Physo132583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 648924 652727 . - 0 ID=Physo132583;Parent=Physo132583;rank=1 scaffold_21 . exon 648924 652727 . - . ID=Physo132583.1;Parent=Physo132583;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 659178 660164 . + . ID=Physo132584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210144;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 659178 660164 . + . ID=Physo132584;Parent=Physo132584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 659178 659435 . + 0 ID=Physo132584;Parent=Physo132584;rank=1 scaffold_21 . exon 659178 659435 . + . ID=Physo132584.1;Parent=Physo132584;constitutive=1;rank=1 scaffold_21 . CDS 659475 660164 . + 0 ID=Physo132584;Parent=Physo132584;rank=2 scaffold_21 . exon 659475 660164 . + . ID=Physo132584.2;Parent=Physo132584;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 660446 661455 . - . ID=Physo132585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210145;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 660446 661455 . - . ID=Physo132585;Parent=Physo132585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 660446 661024 . - 0 ID=Physo132585;Parent=Physo132585;rank=2 scaffold_21 . exon 660446 661024 . - . ID=Physo132585.2;Parent=Physo132585;constitutive=1;rank=2 scaffold_21 . CDS 661045 661455 . - 0 ID=Physo132585;Parent=Physo132585;rank=1 scaffold_21 . exon 661045 661455 . - . ID=Physo132585.1;Parent=Physo132585;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 661940 663337 . - . ID=Physo132586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210146;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 661940 663337 . - . ID=Physo132586;Parent=Physo132586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 661940 663337 . - 0 ID=Physo132586;Parent=Physo132586;rank=1 scaffold_21 . exon 661940 663337 . - . ID=Physo132586.1;Parent=Physo132586;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 664307 665843 . - . ID=Physo132587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210147;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 664307 665843 . - . ID=Physo132587;Parent=Physo132587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 664307 665843 . - . ID=Physo132587.1;Parent=Physo132587;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . CDS 664467 665843 . - 0 ID=Physo132587;Parent=Physo132587;rank=1 scaffold_21 . biological_region 674612 674614 0.999 - . logic_name=eponine scaffold_21 . repeat_region 675844 676147 . - . description=GypsyPi-1c_LTR scaffold_21 . repeat_region 676148 676405 . - . description=GypsyPi-1c_I-int scaffold_21 . biological_region 676399 676405 0.999 + . logic_name=eponine scaffold_21 . biological_region 676769 676771 0.999 - . logic_name=eponine scaffold_21 . biological_region 676944 676947 0.999 - . logic_name=eponine scaffold_21 . repeat_region 677023 677104 . - . description=GypsyPi-1c_I-int scaffold_21 . repeat_region 677302 677384 . ? . description=trf scaffold_21 . repeat_region 677364 677433 . ? . description=trf scaffold_21 . repeat_region 677413 679414 . - . description=GypsyPi-1c_I-int scaffold_21 ensembl protein_coding_gene 671432 671695 . - . ID=Physo114640;biotype=protein_coding;external_name=estExt_Genewise1.C_210073;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 671432 671695 . - . ID=Physo114640;Parent=Physo114640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 671432 671656 . - 0 ID=Physo114640;Parent=Physo114640;rank=1 scaffold_21 . exon 671432 671695 . - . ID=Physo114640.1;Parent=Physo114640;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 667791 668917 . - . ID=Physo132588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210148;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 667791 668917 . - . ID=Physo132588;Parent=Physo132588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 667791 668528 . - 0 ID=Physo132588;Parent=Physo132588;rank=2 scaffold_21 . exon 667791 668528 . - . ID=Physo132588.2;Parent=Physo132588;constitutive=1;rank=2 scaffold_21 . CDS 668654 668917 . - 0 ID=Physo132588;Parent=Physo132588;rank=1 scaffold_21 . exon 668654 668917 . - . ID=Physo132588.1;Parent=Physo132588;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 669374 670326 . + . ID=Physo132589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210149;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 669374 670326 . + . ID=Physo132589;Parent=Physo132589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 669374 669450 . + 0 ID=Physo132589;Parent=Physo132589;rank=1 scaffold_21 . exon 669374 669450 . + . ID=Physo132589.1;Parent=Physo132589;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 669474 670326 . + 0 ID=Physo132589;Parent=Physo132589;rank=2 scaffold_21 . exon 669474 670326 . + . ID=Physo132589.2;Parent=Physo132589;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 673108 675115 . - . ID=Physo132590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210150;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 673108 675115 . - . ID=Physo132590;Parent=Physo132590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 673108 673118 . - 0 ID=Physo132590;Parent=Physo132590;rank=4 scaffold_21 . exon 673108 673118 . - . ID=Physo132590.4;Parent=Physo132590;constitutive=1;ensembl_phase=1;rank=4 scaffold_21 . CDS 673184 673784 . - 0 ID=Physo132590;Parent=Physo132590;rank=3 scaffold_21 . exon 673184 673784 . - . ID=Physo132590.3;Parent=Physo132590;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_21 . CDS 673920 674441 . - 0 ID=Physo132590;Parent=Physo132590;rank=2 scaffold_21 . exon 673920 674441 . - . ID=Physo132590.2;Parent=Physo132590;constitutive=1;rank=2 scaffold_21 . CDS 674546 675115 . - 0 ID=Physo132590;Parent=Physo132590;rank=1 scaffold_21 . exon 674546 675115 . - . ID=Physo132590.1;Parent=Physo132590;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 676042 677274 . + . ID=Physo132591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210151;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 676042 677274 . + . ID=Physo132591;Parent=Physo132591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 676042 676095 . + 0 ID=Physo132591;Parent=Physo132591;rank=1 scaffold_21 . exon 676042 676095 . + . ID=Physo132591.1;Parent=Physo132591;constitutive=1;rank=1 scaffold_21 . CDS 676186 677274 . + 0 ID=Physo132591;Parent=Physo132591;rank=2 scaffold_21 . exon 676186 677274 . + . ID=Physo132591.2;Parent=Physo132591;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 678284 679327 . - . ID=Physo132592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210152;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 678284 679327 . - . ID=Physo132592;Parent=Physo132592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 678284 679327 . - 0 ID=Physo132592;Parent=Physo132592;rank=1 scaffold_21 . exon 678284 679327 . - . ID=Physo132592.1;Parent=Physo132592;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 679968 681022 . - . ID=Physo132593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210153;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 679968 681022 . - . ID=Physo132593;Parent=Physo132593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 679968 680922 . - . ID=Physo132593.2;Parent=Physo132593;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_21 . CDS 680114 680922 . - 0 ID=Physo132593;Parent=Physo132593;rank=2 scaffold_21 . CDS 680956 681022 . - 0 ID=Physo132593;Parent=Physo132593;rank=1 scaffold_21 . exon 680956 681022 . - . ID=Physo132593.1;Parent=Physo132593;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 681190 681872 . + . ID=Physo132594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210154;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 681190 681872 . + . ID=Physo132594;Parent=Physo132594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 681190 681398 . + 0 ID=Physo132594;Parent=Physo132594;rank=1 scaffold_21 . exon 681190 681398 . + . ID=Physo132594.1;Parent=Physo132594;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 681617 681872 . + 0 ID=Physo132594;Parent=Physo132594;rank=2 scaffold_21 . exon 681617 681872 . + . ID=Physo132594.2;Parent=Physo132594;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 ensembl protein_coding_gene 681953 683123 . - . ID=Physo132595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210155;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 681953 683123 . - . ID=Physo132595;Parent=Physo132595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 681953 683123 . - . ID=Physo132595.1;Parent=Physo132595;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . CDS 682101 683123 . - 0 ID=Physo132595;Parent=Physo132595;rank=1 scaffold_21 ensembl protein_coding_gene 684701 687213 . + . ID=Physo132596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210156;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 684701 687213 . + . ID=Physo132596;Parent=Physo132596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 684701 685607 . + 0 ID=Physo132596;Parent=Physo132596;rank=1 scaffold_21 . exon 684701 685607 . + . ID=Physo132596.1;Parent=Physo132596;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 685836 686501 . + 0 ID=Physo132596;Parent=Physo132596;rank=2 scaffold_21 . exon 685836 686501 . + . ID=Physo132596.2;Parent=Physo132596;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 686523 686743 . + 0 ID=Physo132596;Parent=Physo132596;rank=3 scaffold_21 . exon 686523 686743 . + . ID=Physo132596.3;Parent=Physo132596;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 686803 687213 . + 0 ID=Physo132596;Parent=Physo132596;rank=4 scaffold_21 . exon 686803 687213 . + . ID=Physo132596.4;Parent=Physo132596;constitutive=1;rank=4 scaffold_21 . biological_region 691114 691117 0.999 + . logic_name=eponine scaffold_21 . biological_region 691201 691201 0.999 - . logic_name=eponine scaffold_21 . biological_region 691218 691222 0.999 - . logic_name=eponine scaffold_21 . repeat_region 691344 691550 . ? . description=trf scaffold_21 . repeat_region 691700 692010 . ? . description=trf scaffold_21 . repeat_region 691723 692046 . ? . description=trf scaffold_21 . biological_region 692708 692709 0.999 - . logic_name=eponine scaffold_21 . biological_region 696188 696194 0.999 + . logic_name=eponine scaffold_21 . biological_region 696241 696247 0.999 - . logic_name=eponine scaffold_21 . biological_region 696265 696267 0.999 - . logic_name=eponine scaffold_21 . biological_region 696282 696286 0.999 - . logic_name=eponine scaffold_21 . biological_region 696356 696356 0.999 + . logic_name=eponine scaffold_21 . biological_region 697090 697096 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 688785 692294 . - . ID=Physo132597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210157;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 688785 692294 . - . ID=Physo132597;Parent=Physo132597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 688785 690324 . - 0 ID=Physo132597;Parent=Physo132597;rank=2 scaffold_21 . exon 688785 690324 . - . ID=Physo132597.2;Parent=Physo132597;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 691051 692294 . - 0 ID=Physo132597;Parent=Physo132597;rank=1 scaffold_21 . exon 691051 692294 . - . ID=Physo132597.1;Parent=Physo132597;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 693159 694253 . - . ID=Physo132598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210158;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 693159 694253 . - . ID=Physo132598;Parent=Physo132598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 693159 694253 . - 0 ID=Physo132598;Parent=Physo132598;rank=1 scaffold_21 . exon 693159 694253 . - . ID=Physo132598.1;Parent=Physo132598;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 696981 698540 . + . ID=Physo132599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210159;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 696981 698540 . + . ID=Physo132599;Parent=Physo132599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 696981 698318 . + 0 ID=Physo132599;Parent=Physo132599;rank=1 scaffold_21 . exon 696981 698540 . + . ID=Physo132599.1;Parent=Physo132599;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . repeat_region 698369 698387 . ? . description=dust scaffold_21 . repeat_region 699650 699709 . ? . description=dust scaffold_21 ensembl protein_coding_gene 698940 699833 . - . ID=Physo132600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210160;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 698940 699833 . - . ID=Physo132600;Parent=Physo132600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 698940 699833 . - 0 ID=Physo132600;Parent=Physo132600;rank=1 scaffold_21 . exon 698940 699833 . - . ID=Physo132600.1;Parent=Physo132600;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 700035 700975 . - . ID=Physo132601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210161;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 700035 700975 . - . ID=Physo132601;Parent=Physo132601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 700035 700733 . - 0 ID=Physo132601;Parent=Physo132601;rank=2 scaffold_21 . exon 700035 700733 . - . ID=Physo132601.2;Parent=Physo132601;constitutive=1;rank=2 scaffold_21 . CDS 700815 700817 . - 0 ID=Physo132601;Parent=Physo132601;rank=1 scaffold_21 . exon 700815 700975 . - . ID=Physo132601.1;Parent=Physo132601;constitutive=1;ensembl_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 701171 701944 . + . ID=Physo132602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210162;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 701171 701944 . + . ID=Physo132602;Parent=Physo132602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 701171 701881 . + 0 ID=Physo132602;Parent=Physo132602;rank=1 scaffold_21 . exon 701171 701944 . + . ID=Physo132602.1;Parent=Physo132602;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 701970 703279 . - . ID=Physo132603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210163;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 701970 703279 . - . ID=Physo132603;Parent=Physo132603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 701970 702921 . - 0 ID=Physo132603;Parent=Physo132603;rank=2 scaffold_21 . exon 701970 702921 . - . ID=Physo132603.2;Parent=Physo132603;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 702987 703279 . - 0 ID=Physo132603;Parent=Physo132603;rank=1 scaffold_21 . exon 702987 703279 . - . ID=Physo132603.1;Parent=Physo132603;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 705823 707466 . + . ID=Physo132604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210164;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 705823 707466 . + . ID=Physo132604;Parent=Physo132604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 705823 707466 . + 0 ID=Physo132604;Parent=Physo132604;rank=1 scaffold_21 . exon 705823 707466 . + . ID=Physo132604.1;Parent=Physo132604;constitutive=1;rank=1 scaffold_21 . biological_region 708283 708284 0.999 - . logic_name=eponine scaffold_21 . biological_region 708302 708308 0.999 - . logic_name=eponine scaffold_21 . biological_region 708336 708341 0.999 + . logic_name=eponine scaffold_21 . biological_region 708480 708483 0.999 - . logic_name=eponine scaffold_21 . biological_region 708522 708534 0.999 - . logic_name=eponine scaffold_21 . biological_region 708541 708544 0.999 + . logic_name=eponine scaffold_21 . biological_region 708565 708565 0.999 - . logic_name=eponine scaffold_21 . biological_region 709434 709435 0.999 - . logic_name=eponine scaffold_21 . biological_region 709465 709465 0.999 + . logic_name=eponine scaffold_21 . biological_region 710804 710808 0.999 - . logic_name=eponine scaffold_21 . repeat_region 713881 713904 . ? . description=trf scaffold_21 . biological_region 714431 714436 0.999 + . logic_name=eponine scaffold_21 . biological_region 714438 714442 0.999 - . logic_name=eponine scaffold_21 . biological_region 714467 714467 0.999 + . logic_name=eponine scaffold_21 . biological_region 714488 714494 0.999 - . logic_name=eponine scaffold_21 . biological_region 714536 714538 0.999 - . logic_name=eponine scaffold_21 . biological_region 714788 714789 0.999 + . logic_name=eponine scaffold_21 . biological_region 714806 714809 0.999 - . logic_name=eponine scaffold_21 . biological_region 714807 714812 0.999 + . logic_name=eponine scaffold_21 . biological_region 714889 714892 0.999 + . logic_name=eponine scaffold_21 . biological_region 715221 715225 0.999 - . logic_name=eponine scaffold_21 . biological_region 715279 715284 0.999 + . logic_name=eponine scaffold_21 . biological_region 715303 715309 0.999 + . logic_name=eponine scaffold_21 ensembl protein_coding_gene 707576 708795 . - . ID=Physo108637;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_210011;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 707576 708795 . - . ID=Physo108637;Parent=Physo108637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 707576 708795 . - . ID=Physo108637.1;Parent=Physo108637;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . CDS 707875 708795 . - 0 ID=Physo108637;Parent=Physo108637;rank=1 scaffold_21 ensembl protein_coding_gene 710211 712652 . + . ID=Physo132606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210166;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 710211 712652 . + . ID=Physo132606;Parent=Physo132606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 710211 712652 . + 0 ID=Physo132606;Parent=Physo132606;rank=1 scaffold_21 . exon 710211 712652 . + . ID=Physo132606.1;Parent=Physo132606;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 715297 716718 . + . ID=Physo132607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210167;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 715297 716718 . + . ID=Physo132607;Parent=Physo132607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 715297 716718 . + 0 ID=Physo132607;Parent=Physo132607;rank=1 scaffold_21 . exon 715297 716718 . + . ID=Physo132607.1;Parent=Physo132607;constitutive=1;rank=1 scaffold_21 . repeat_region 718811 718834 . ? . description=dust scaffold_21 . repeat_region 720162 720169 . ? . description=dust scaffold_21 . repeat_region 725277 725325 . ? . description=dust scaffold_21 ensembl protein_coding_gene 721602 723400 . - . ID=Physo132608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210168;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 721602 723400 . - . ID=Physo132608;Parent=Physo132608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 721602 722133 . - 0 ID=Physo132608;Parent=Physo132608;rank=4 scaffold_21 . exon 721602 722133 . - . ID=Physo132608.4;Parent=Physo132608;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 722197 722399 . - 0 ID=Physo132608;Parent=Physo132608;rank=3 scaffold_21 . exon 722197 722399 . - . ID=Physo132608.3;Parent=Physo132608;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_21 . CDS 722439 722560 . - 0 ID=Physo132608;Parent=Physo132608;rank=2 scaffold_21 . exon 722439 722560 . - . ID=Physo132608.2;Parent=Physo132608;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 723049 723400 . - 0 ID=Physo132608;Parent=Physo132608;rank=1 scaffold_21 . exon 723049 723400 . - . ID=Physo132608.1;Parent=Physo132608;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 723865 725763 . - . ID=Physo132609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210169;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 723865 725763 . - . ID=Physo132609;Parent=Physo132609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 723865 725763 . - . ID=Physo132609.1;Parent=Physo132609;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . CDS 724000 725763 . - 0 ID=Physo132609;Parent=Physo132609;rank=1 scaffold_21 . biological_region 727688 727690 0.999 - . logic_name=eponine scaffold_21 . biological_region 729244 729247 0.999 - . logic_name=eponine scaffold_21 . biological_region 731702 731705 0.999 - . logic_name=eponine scaffold_21 . biological_region 731771 731771 0.999 - . logic_name=eponine scaffold_21 . biological_region 734062 734067 0.999 + . logic_name=eponine scaffold_21 . biological_region 734964 734967 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 727519 729262 . - . ID=Physo132610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210170;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 727519 729262 . - . ID=Physo132610;Parent=Physo132610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 727519 728640 . - . ID=Physo132610.3;Parent=Physo132610;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_21 . CDS 727553 728640 . - 0 ID=Physo132610;Parent=Physo132610;rank=3 scaffold_21 . CDS 728727 728882 . - 0 ID=Physo132610;Parent=Physo132610;rank=2 scaffold_21 . exon 728727 728882 . - . ID=Physo132610.2;Parent=Physo132610;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 728963 729056 . - 0 ID=Physo132610;Parent=Physo132610;rank=1 scaffold_21 . exon 728963 729262 . - . ID=Physo132610.1;Parent=Physo132610;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_21 ensembl pseudogene 731318 732239 . + . ID=Physo132611;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_210171;logic_name=jgi_physo1_1 scaffold_21 ensembl pseudogene 731318 732239 . + . ID=Physo132611;Parent=Physo132611;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_21 . exon 731318 732135 . + . ID=Physo132611.1;Parent=Physo132611;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . exon 732221 732239 . + . ID=Physo132611.2;Parent=Physo132611;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_21 ensembl protein_coding_gene 733623 734474 . + . ID=Physo132612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210172;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 733623 734474 . + . ID=Physo132612;Parent=Physo132612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 733623 734474 . + 0 ID=Physo132612;Parent=Physo132612;rank=1 scaffold_21 . exon 733623 734474 . + . ID=Physo132612.1;Parent=Physo132612;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 735326 736213 . + . ID=Physo156530;biotype=protein_coding;external_name=C_scaffold_21000020;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 735326 736213 . + . ID=Physo156530;Parent=Physo156530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 735326 736213 . + 0 ID=Physo156530;Parent=Physo156530;rank=1 scaffold_21 . exon 735326 736213 . + . ID=Physo156530.1;Parent=Physo156530;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 736462 737184 . - . ID=Physo156531;biotype=protein_coding;external_name=C_scaffold_21000021;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 736462 737184 . - . ID=Physo156531;Parent=Physo156531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 736462 736618 . - 0 ID=Physo156531;Parent=Physo156531;rank=2 scaffold_21 . exon 736462 736618 . - . ID=Physo156531.2;Parent=Physo156531;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 736793 737184 . - 0 ID=Physo156531;Parent=Physo156531;rank=1 scaffold_21 . exon 736793 737184 . - . ID=Physo156531.1;Parent=Physo156531;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . repeat_region 738100 738107 . ? . description=dust scaffold_21 . repeat_region 740771 740806 . ? . description=trf scaffold_21 . repeat_region 740867 740919 . ? . description=trf scaffold_21 . repeat_region 740867 740919 . ? . description=trf scaffold_21 . repeat_region 741397 741519 . ? . description=dust scaffold_21 . repeat_region 744735 744770 . ? . description=trf scaffold_21 . repeat_region 744831 744883 . ? . description=trf scaffold_21 . repeat_region 744831 744883 . ? . description=trf scaffold_21 . repeat_region 746473 746532 . ? . description=dust scaffold_21 ensembl protein_coding_gene 738714 739547 . + . ID=Physo108638;biotype=protein_coding;description=Glutathione peroxidase [Source:UniProtKB/TrEMBL%3BAcc:Q0QYT3];external_name=PHGPX;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 738714 739547 . + . ID=Physo108638;Parent=Physo108638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 738714 739547 . + . ID=Physo108638.1;Parent=Physo108638;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 738789 739475 . + 0 ID=Physo108638;Parent=Physo108638;rank=1 scaffold_21 ensembl protein_coding_gene 741066 744672 . + . ID=Physo132617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210177;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 741066 744672 . + . ID=Physo132617;Parent=Physo132617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 741066 741302 . + 0 ID=Physo132617;Parent=Physo132617;rank=1 scaffold_21 . exon 741066 741302 . + . ID=Physo132617.1;Parent=Physo132617;constitutive=1;rank=1 scaffold_21 . CDS 741553 744672 . + 0 ID=Physo132617;Parent=Physo132617;rank=2 scaffold_21 . exon 741553 744672 . + . ID=Physo132617.2;Parent=Physo132617;constitutive=1;rank=2 scaffold_21 ensembl protein_coding_gene 745724 747326 . - . ID=Physo132618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210178;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 745724 747326 . - . ID=Physo132618;Parent=Physo132618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 745724 746115 . - 0 ID=Physo132618;Parent=Physo132618;rank=7 scaffold_21 . exon 745724 746115 . - . ID=Physo132618.7;Parent=Physo132618;constitutive=1;ensembl_phase=1;rank=7 scaffold_21 . CDS 746195 746427 . - 0 ID=Physo132618;Parent=Physo132618;rank=6 scaffold_21 . exon 746195 746427 . - . ID=Physo132618.6;Parent=Physo132618;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_21 . CDS 746544 746553 . - 0 ID=Physo132618;Parent=Physo132618;rank=5 scaffold_21 . exon 746544 746553 . - . ID=Physo132618.5;Parent=Physo132618;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_21 . CDS 746581 746709 . - 0 ID=Physo132618;Parent=Physo132618;rank=4 scaffold_21 . exon 746581 746709 . - . ID=Physo132618.4;Parent=Physo132618;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_21 . CDS 746758 747047 . - 0 ID=Physo132618;Parent=Physo132618;rank=3 scaffold_21 . exon 746758 747047 . - . ID=Physo132618.3;Parent=Physo132618;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_21 . CDS 747109 747236 . - 0 ID=Physo132618;Parent=Physo132618;rank=2 scaffold_21 . exon 747109 747236 . - . ID=Physo132618.2;Parent=Physo132618;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . CDS 747285 747326 . - 0 ID=Physo132618;Parent=Physo132618;rank=1 scaffold_21 . biological_region 751782 751787 0.999 + . logic_name=eponine scaffold_21 . biological_region 752187 752190 0.999 - . logic_name=eponine scaffold_21 . biological_region 752246 752246 0.999 + . logic_name=eponine scaffold_21 . biological_region 752264 752264 0.999 + . logic_name=eponine scaffold_21 . biological_region 753708 753711 0.999 + . logic_name=eponine scaffold_21 . biological_region 753747 753752 0.999 + . logic_name=eponine scaffold_21 . biological_region 754434 754436 0.999 + . logic_name=eponine scaffold_21 . biological_region 754447 754448 0.999 - . logic_name=eponine scaffold_21 . biological_region 754527 754528 0.999 - . logic_name=eponine scaffold_21 . biological_region 754710 754711 0.999 + . logic_name=eponine scaffold_21 . biological_region 755015 755021 0.999 - . logic_name=eponine scaffold_21 . biological_region 755094 755097 0.999 - . logic_name=eponine scaffold_21 . biological_region 755353 755353 0.999 + . logic_name=eponine scaffold_21 . biological_region 755525 755527 0.999 + . logic_name=eponine scaffold_21 . biological_region 755547 755549 0.999 + . logic_name=eponine scaffold_21 . biological_region 755606 755610 0.999 - . logic_name=eponine scaffold_21 . biological_region 755645 755646 0.999 - . logic_name=eponine scaffold_21 . biological_region 755701 755703 0.999 + . logic_name=eponine scaffold_21 . biological_region 755940 755944 0.999 + . logic_name=eponine scaffold_21 . biological_region 756848 756854 0.999 + . logic_name=eponine scaffold_21 ensembl pseudogene 747882 748844 . + . ID=Physo114667;biotype=pseudogene;external_name=estExt_Genewise1.C_210100;logic_name=jgi_physo1_1 scaffold_21 ensembl pseudogene 747882 748844 . + . ID=Physo114667;Parent=Physo114667;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_21 . exon 747882 748844 . + . ID=Physo114667.1;Parent=Physo114667;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . exon 747285 747326 . - . ID=Physo132618.1;Parent=Physo132618;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 751277 752889 . - . ID=Physo132621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210181;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 751277 752889 . - . ID=Physo132621;Parent=Physo132621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 751277 752490 . - . ID=Physo132621.3;Parent=Physo132621;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_21 . CDS 751725 752490 . - 0 ID=Physo132621;Parent=Physo132621;rank=3 scaffold_21 . CDS 752598 752745 . - 0 ID=Physo132621;Parent=Physo132621;rank=2 scaffold_21 . exon 752598 752745 . - . ID=Physo132621.2;Parent=Physo132621;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 752836 752866 . - 0 ID=Physo132621;Parent=Physo132621;rank=1 scaffold_21 . exon 752836 752889 . - . ID=Physo132621.1;Parent=Physo132621;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_21 ensembl protein_coding_gene 755200 756215 . + . ID=Physo132622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210182;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 755200 756215 . + . ID=Physo132622;Parent=Physo132622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 755200 756215 . + . ID=Physo132622.1;Parent=Physo132622;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_21 . CDS 755201 756214 . + 0 ID=Physo132622;Parent=Physo132622;rank=1 scaffold_21 ensembl protein_coding_gene 757162 758545 . - . ID=Physo132623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210183;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 757162 758545 . - . ID=Physo132623;Parent=Physo132623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 757162 757268 . - 0 ID=Physo132623;Parent=Physo132623;rank=2 scaffold_21 . exon 757162 757268 . - . ID=Physo132623.2;Parent=Physo132623;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 757348 758545 . - 0 ID=Physo132623;Parent=Physo132623;rank=1 scaffold_21 ensembl protein_coding_gene 750363 751289 . + . ID=Physo156534;biotype=protein_coding;external_name=C_scaffold_21000024;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 750363 751289 . + . ID=Physo156534;Parent=Physo156534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 750363 750887 . + 0 ID=Physo156534;Parent=Physo156534;rank=1 scaffold_21 . exon 750363 750887 . + . ID=Physo156534.1;Parent=Physo156534;constitutive=1;rank=1 scaffold_21 . CDS 750948 751169 . + 0 ID=Physo156534;Parent=Physo156534;rank=2 scaffold_21 . exon 750948 751169 . + . ID=Physo156534.2;Parent=Physo156534;constitutive=1;rank=2 scaffold_21 . CDS 751197 751289 . + 0 ID=Physo156534;Parent=Physo156534;rank=3 scaffold_21 . exon 751197 751289 . + . ID=Physo156534.3;Parent=Physo156534;constitutive=1;rank=3 scaffold_21 ensembl protein_coding_gene 765076 765657 . + . ID=Physo108639;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_210013;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 765076 765657 . + . ID=Physo108639;Parent=Physo108639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 765076 765657 . + 0 ID=Physo108639;Parent=Physo108639;rank=1 scaffold_21 . exon 765076 765657 . + . ID=Physo108639.1;Parent=Physo108639;constitutive=1;rank=1 scaffold_21 . exon 757348 758545 . - . ID=Physo132623.1;Parent=Physo132623;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 ensembl protein_coding_gene 758689 760866 . + . ID=Physo132624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210184;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 758689 760866 . + . ID=Physo132624;Parent=Physo132624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 758689 758716 . + . ID=Physo132624.1;Parent=Physo132624;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_21 . CDS 758700 758716 . + 0 ID=Physo132624;Parent=Physo132624;rank=1 scaffold_21 . CDS 758805 759034 . + 0 ID=Physo132624;Parent=Physo132624;rank=2 scaffold_21 . exon 758805 759034 . + . ID=Physo132624.2;Parent=Physo132624;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 759113 760866 . + 0 ID=Physo132624;Parent=Physo132624;rank=3 scaffold_21 . exon 759113 760866 . + . ID=Physo132624.3;Parent=Physo132624;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 ensembl protein_coding_gene 761045 762826 . - . ID=Physo132625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210185;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 761045 762826 . - . ID=Physo132625;Parent=Physo132625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 761045 762826 . - 0 ID=Physo132625;Parent=Physo132625;rank=1 scaffold_21 . exon 761045 762826 . - . ID=Physo132625.1;Parent=Physo132625;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 763711 764895 . + . ID=Physo132626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210186;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 763711 764895 . + . ID=Physo132626;Parent=Physo132626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 763711 764895 . + 0 ID=Physo132626;Parent=Physo132626;rank=1 scaffold_21 . exon 763711 764895 . + . ID=Physo132626.1;Parent=Physo132626;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 766086 766582 . - . ID=Physo156538;biotype=protein_coding;external_name=C_scaffold_21000028;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 766086 766582 . - . ID=Physo156538;Parent=Physo156538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 766086 766101 . - 0 ID=Physo156538;Parent=Physo156538;rank=2 scaffold_21 . exon 766086 766101 . - . ID=Physo156538.2;Parent=Physo156538;constitutive=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 766353 766582 . - 0 ID=Physo156538;Parent=Physo156538;rank=1 scaffold_21 . exon 766353 766582 . - . ID=Physo156538.1;Parent=Physo156538;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . biological_region 767559 767560 0.999 + . logic_name=eponine scaffold_21 . biological_region 768447 768454 0.999 + . logic_name=eponine scaffold_21 . biological_region 768548 768550 0.999 - . logic_name=eponine scaffold_21 . biological_region 769031 769034 0.999 - . logic_name=eponine scaffold_21 . biological_region 772746 772749 0.999 - . logic_name=eponine scaffold_21 . biological_region 774271 774274 0.999 - . logic_name=eponine scaffold_21 . biological_region 774320 774324 0.999 - . logic_name=eponine scaffold_21 . biological_region 775091 775097 0.999 + . logic_name=eponine scaffold_21 . biological_region 775390 775392 0.999 - . logic_name=eponine scaffold_21 . repeat_region 775549 775593 . ? . description=trf scaffold_21 . repeat_region 775867 775915 . ? . description=trf scaffold_21 . biological_region 776337 776343 0.999 + . logic_name=eponine scaffold_21 . repeat_region 776401 776463 . ? . description=dust scaffold_21 . biological_region 776423 776429 0.999 - . logic_name=eponine scaffold_21 . biological_region 776424 776428 0.999 + . logic_name=eponine scaffold_21 . biological_region 776438 776441 0.999 + . logic_name=eponine scaffold_21 . biological_region 776452 776456 0.999 + . logic_name=eponine scaffold_21 . biological_region 776467 776484 0.999 + . logic_name=eponine scaffold_21 . biological_region 776485 776497 0.999 - . logic_name=eponine scaffold_21 . biological_region 776495 776505 0.999 + . logic_name=eponine scaffold_21 . biological_region 776507 776513 0.999 - . logic_name=eponine scaffold_21 . repeat_region 776515 776546 . ? . description=trf scaffold_21 . biological_region 776529 776537 0.999 - . logic_name=eponine scaffold_21 . biological_region 776547 776552 0.999 + . logic_name=eponine scaffold_21 . biological_region 776563 776568 0.999 + . logic_name=eponine scaffold_21 . biological_region 776563 776568 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 768050 769694 . + . ID=Physo132629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210189;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 768050 769694 . + . ID=Physo132629;Parent=Physo132629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 768050 768080 . + 0 ID=Physo132629;Parent=Physo132629;rank=1 scaffold_21 . exon 768050 768080 . + . ID=Physo132629.1;Parent=Physo132629;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 768348 768734 . + 0 ID=Physo132629;Parent=Physo132629;rank=2 scaffold_21 . exon 768348 768734 . + . ID=Physo132629.2;Parent=Physo132629;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 768811 769694 . + 0 ID=Physo132629;Parent=Physo132629;rank=3 scaffold_21 . exon 768811 769694 . + . ID=Physo132629.3;Parent=Physo132629;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 ensembl protein_coding_gene 772976 774288 . - . ID=Physo132630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210190;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 772976 774288 . - . ID=Physo132630;Parent=Physo132630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 772976 774288 . - . ID=Physo132630.1;Parent=Physo132630;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . CDS 773074 774288 . - 0 ID=Physo132630;Parent=Physo132630;rank=1 scaffold_21 ensembl protein_coding_gene 774556 775700 . - . ID=Physo132631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210191;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 774556 775700 . - . ID=Physo132631;Parent=Physo132631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 774556 775700 . - . ID=Physo132631.1;Parent=Physo132631;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . CDS 774657 775700 . - 0 ID=Physo132631;Parent=Physo132631;rank=1 scaffold_21 ensembl protein_coding_gene 776352 777500 . + . ID=Physo132632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210192;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 776352 777500 . + . ID=Physo132632;Parent=Physo132632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 776352 777500 . + 0 ID=Physo132632;Parent=Physo132632;rank=1 scaffold_21 . exon 776352 777500 . + . ID=Physo132632.1;Parent=Physo132632;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 780207 780566 . + . ID=Physo132634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210194;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 780207 780566 . + . ID=Physo132634;Parent=Physo132634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 780207 780566 . + 0 ID=Physo132634;Parent=Physo132634;rank=1 scaffold_21 . exon 780207 780566 . + . ID=Physo132634.1;Parent=Physo132634;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 783964 787678 . + . ID=Physo132635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210195;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 783964 787678 . + . ID=Physo132635;Parent=Physo132635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 783964 785361 . + 0 ID=Physo132635;Parent=Physo132635;rank=1 scaffold_21 . exon 783964 785361 . + . ID=Physo132635.1;Parent=Physo132635;constitutive=1;rank=1 scaffold_21 . CDS 785632 785770 . + 0 ID=Physo132635;Parent=Physo132635;rank=2 scaffold_21 . exon 785632 785770 . + . ID=Physo132635.2;Parent=Physo132635;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 786239 786732 . + 0 ID=Physo132635;Parent=Physo132635;rank=3 scaffold_21 . exon 786239 786732 . + . ID=Physo132635.3;Parent=Physo132635;constitutive=1;ensembl_phase=1;rank=3 scaffold_21 . CDS 786923 787043 . + 0 ID=Physo132635;Parent=Physo132635;rank=4 scaffold_21 . exon 786923 787043 . + . ID=Physo132635.4;Parent=Physo132635;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_21 . CDS 787109 787234 . + 0 ID=Physo132635;Parent=Physo132635;rank=5 scaffold_21 . CDS 787329 787573 . + 0 ID=Physo132635;Parent=Physo132635;rank=6 scaffold_21 ensembl protein_coding_gene 778150 779191 . - . ID=Physo156539;biotype=protein_coding;external_name=C_scaffold_21000029;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 778150 779191 . - . ID=Physo156539;Parent=Physo156539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 778150 778398 . - 0 ID=Physo156539;Parent=Physo156539;rank=5 scaffold_21 . exon 778150 778398 . - . ID=Physo156539.5;Parent=Physo156539;constitutive=1;rank=5 scaffold_21 . CDS 778600 778678 . - 0 ID=Physo156539;Parent=Physo156539;rank=4 scaffold_21 . exon 778600 778678 . - . ID=Physo156539.4;Parent=Physo156539;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . CDS 778724 778766 . - 0 ID=Physo156539;Parent=Physo156539;rank=3 scaffold_21 . exon 778724 778766 . - . ID=Physo156539.3;Parent=Physo156539;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . CDS 778834 778975 . - 0 ID=Physo156539;Parent=Physo156539;rank=2 scaffold_21 . exon 778834 778975 . - . ID=Physo156539.2;Parent=Physo156539;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_21 . CDS 779048 779191 . - 0 ID=Physo156539;Parent=Physo156539;rank=1 scaffold_21 . exon 779048 779191 . - . ID=Physo156539.1;Parent=Physo156539;constitutive=1;rank=1 scaffold_21 . biological_region 787378 787384 0.999 + . logic_name=eponine scaffold_21 . biological_region 787449 787453 0.999 + . logic_name=eponine scaffold_21 . repeat_region 790141 790155 . ? . description=dust scaffold_21 . repeat_region 792988 793010 . ? . description=dust scaffold_21 . repeat_region 792988 793010 . ? . description=trf scaffold_21 . exon 787109 787234 . + . ID=Physo132635.5;Parent=Physo132635;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_21 . exon 787329 787678 . + . ID=Physo132635.6;Parent=Physo132635;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_21 ensembl protein_coding_gene 788004 790088 . + . ID=Physo132636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210196;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 788004 790088 . + . ID=Physo132636;Parent=Physo132636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 788004 790088 . + 0 ID=Physo132636;Parent=Physo132636;rank=1 scaffold_21 . exon 788004 790088 . + . ID=Physo132636.1;Parent=Physo132636;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 791486 792458 . + . ID=Physo132637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210197;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 791486 792458 . + . ID=Physo132637;Parent=Physo132637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 791486 791565 . + 0 ID=Physo132637;Parent=Physo132637;rank=1 scaffold_21 . exon 791486 791565 . + . ID=Physo132637.1;Parent=Physo132637;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 791612 791781 . + 0 ID=Physo132637;Parent=Physo132637;rank=2 scaffold_21 . exon 791612 791781 . + . ID=Physo132637.2;Parent=Physo132637;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_21 . CDS 791861 792128 . + 0 ID=Physo132637;Parent=Physo132637;rank=3 scaffold_21 . exon 791861 792128 . + . ID=Physo132637.3;Parent=Physo132637;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_21 . CDS 792209 792458 . + 0 ID=Physo132637;Parent=Physo132637;rank=4 scaffold_21 . exon 792209 792458 . + . ID=Physo132637.4;Parent=Physo132637;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 ensembl protein_coding_gene 795481 796281 . - . ID=Physo132638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210198;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 795481 796281 . - . ID=Physo132638;Parent=Physo132638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 795481 796281 . - 0 ID=Physo132638;Parent=Physo132638;rank=1 scaffold_21 . exon 795481 796281 . - . ID=Physo132638.1;Parent=Physo132638;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 796454 797533 . - . ID=Physo132639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210199;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 796454 797533 . - . ID=Physo132639;Parent=Physo132639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 796454 797188 . - 0 ID=Physo132639;Parent=Physo132639;rank=3 scaffold_21 . exon 796454 797188 . - . ID=Physo132639.3;Parent=Physo132639;constitutive=1;rank=3 scaffold_21 . CDS 797233 797403 . - 0 ID=Physo132639;Parent=Physo132639;rank=2 scaffold_21 . CDS 797498 797533 . - 0 ID=Physo132639;Parent=Physo132639;rank=1 scaffold_21 ensembl protein_coding_gene 792611 794279 . - . ID=Physo156542;biotype=protein_coding;external_name=C_scaffold_21000032;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 792611 794279 . - . ID=Physo156542;Parent=Physo156542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 792611 792796 . - 0 ID=Physo156542;Parent=Physo156542;rank=6 scaffold_21 . exon 792611 792796 . - . ID=Physo156542.6;Parent=Physo156542;constitutive=1;rank=6 scaffold_21 . CDS 792883 792951 . - 0 ID=Physo156542;Parent=Physo156542;rank=5 scaffold_21 . exon 792883 792951 . - . ID=Physo156542.5;Parent=Physo156542;constitutive=1;rank=5 scaffold_21 . CDS 793039 793227 . - 0 ID=Physo156542;Parent=Physo156542;rank=4 scaffold_21 . exon 793039 793227 . - . ID=Physo156542.4;Parent=Physo156542;constitutive=1;rank=4 scaffold_21 . CDS 793328 793975 . - 0 ID=Physo156542;Parent=Physo156542;rank=3 scaffold_21 . exon 793328 793975 . - . ID=Physo156542.3;Parent=Physo156542;constitutive=1;rank=3 scaffold_21 . CDS 794048 794133 . - 0 ID=Physo156542;Parent=Physo156542;rank=2 scaffold_21 . exon 794048 794133 . - . ID=Physo156542.2;Parent=Physo156542;constitutive=1;ensembl_phase=1;rank=2 scaffold_21 . CDS 794219 794279 . - 0 ID=Physo156542;Parent=Physo156542;rank=1 scaffold_21 . exon 794219 794279 . - . ID=Physo156542.1;Parent=Physo156542;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . exon 797233 797403 . - . ID=Physo132639.2;Parent=Physo132639;constitutive=1;rank=2 scaffold_21 . exon 797498 797533 . - . ID=Physo132639.1;Parent=Physo132639;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 797742 800478 . - . ID=Physo132640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210200;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 797742 800478 . - . ID=Physo132640;Parent=Physo132640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 797742 798901 . - 0 ID=Physo132640;Parent=Physo132640;rank=9 scaffold_21 . exon 797742 798901 . - . ID=Physo132640.9;Parent=Physo132640;constitutive=1;ensembl_phase=1;rank=9 scaffold_21 . CDS 798984 799162 . - 0 ID=Physo132640;Parent=Physo132640;rank=8 scaffold_21 . exon 798984 799162 . - . ID=Physo132640.8;Parent=Physo132640;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_21 . CDS 799233 799301 . - 0 ID=Physo132640;Parent=Physo132640;rank=7 scaffold_21 . exon 799233 799301 . - . ID=Physo132640.7;Parent=Physo132640;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_21 . CDS 799376 799395 . - 0 ID=Physo132640;Parent=Physo132640;rank=6 scaffold_21 . exon 799376 799395 . - . ID=Physo132640.6;Parent=Physo132640;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_21 . CDS 799436 799511 . - 0 ID=Physo132640;Parent=Physo132640;rank=5 scaffold_21 . exon 799436 799511 . - . ID=Physo132640.5;Parent=Physo132640;constitutive=1;ensembl_phase=2;rank=5 scaffold_21 . CDS 799540 799611 . - 0 ID=Physo132640;Parent=Physo132640;rank=4 scaffold_21 . exon 799540 799611 . - . ID=Physo132640.4;Parent=Physo132640;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . CDS 799689 799763 . - 0 ID=Physo132640;Parent=Physo132640;rank=3 scaffold_21 . exon 799689 799763 . - . ID=Physo132640.3;Parent=Physo132640;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_21 . CDS 799843 799965 . - 0 ID=Physo132640;Parent=Physo132640;rank=2 scaffold_21 . exon 799843 799965 . - . ID=Physo132640.2;Parent=Physo132640;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 800039 800478 . - 0 ID=Physo132640;Parent=Physo132640;rank=1 scaffold_21 . exon 800039 800478 . - . ID=Physo132640.1;Parent=Physo132640;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 801901 802832 . + . ID=Physo132641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210201;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 801901 802832 . + . ID=Physo132641;Parent=Physo132641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 801901 802201 . + 0 ID=Physo132641;Parent=Physo132641;rank=1 scaffold_21 . exon 801901 802201 . + . ID=Physo132641.1;Parent=Physo132641;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 802259 802517 . + 0 ID=Physo132641;Parent=Physo132641;rank=2 scaffold_21 . exon 802259 802517 . + . ID=Physo132641.2;Parent=Physo132641;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 802583 802832 . + 0 ID=Physo132641;Parent=Physo132641;rank=3 scaffold_21 . exon 802583 802832 . + . ID=Physo132641.3;Parent=Physo132641;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 ensembl protein_coding_gene 805258 806211 . + . ID=Physo132642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210202;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 805258 806211 . + . ID=Physo132642;Parent=Physo132642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 805258 805564 . + 0 ID=Physo132642;Parent=Physo132642;rank=1 scaffold_21 . exon 805258 805564 . + . ID=Physo132642.1;Parent=Physo132642;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_21 . CDS 805640 805898 . + 0 ID=Physo132642;Parent=Physo132642;rank=2 scaffold_21 . exon 805640 805898 . + . ID=Physo132642.2;Parent=Physo132642;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_21 . CDS 805962 806211 . + 0 ID=Physo132642;Parent=Physo132642;rank=3 scaffold_21 . exon 805962 806211 . + . ID=Physo132642.3;Parent=Physo132642;constitutive=1;ensembl_phase=2;rank=3 scaffold_21 . repeat_region 806998 807005 . ? . description=dust scaffold_21 . repeat_region 811029 811061 . ? . description=dust scaffold_21 . repeat_region 811688 811700 . ? . description=dust scaffold_21 . repeat_region 812163 812170 . ? . description=dust scaffold_21 . biological_region 813407 813409 0.999 - . logic_name=eponine scaffold_21 . biological_region 813461 813465 0.999 + . logic_name=eponine scaffold_21 . biological_region 816631 816636 0.999 + . logic_name=eponine scaffold_21 . biological_region 816650 816653 0.999 - . logic_name=eponine scaffold_21 . biological_region 816774 816780 0.999 - . logic_name=eponine scaffold_21 ensembl protein_coding_gene 807977 810574 . + . ID=Physo132643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210203;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 807977 810574 . + . ID=Physo132643;Parent=Physo132643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 807977 808290 . + 0 ID=Physo132643;Parent=Physo132643;rank=1 scaffold_21 . exon 807977 808290 . + . ID=Physo132643.1;Parent=Physo132643;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 808357 808479 . + 0 ID=Physo132643;Parent=Physo132643;rank=2 scaffold_21 . exon 808357 808479 . + . ID=Physo132643.2;Parent=Physo132643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 808545 808619 . + 0 ID=Physo132643;Parent=Physo132643;rank=3 scaffold_21 . exon 808545 808619 . + . ID=Physo132643.3;Parent=Physo132643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_21 . CDS 808688 808759 . + 0 ID=Physo132643;Parent=Physo132643;rank=4 scaffold_21 . exon 808688 808759 . + . ID=Physo132643.4;Parent=Physo132643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . CDS 808832 808921 . + 0 ID=Physo132643;Parent=Physo132643;rank=5 scaffold_21 . exon 808832 808921 . + . ID=Physo132643.5;Parent=Physo132643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_21 . CDS 808997 809065 . + 0 ID=Physo132643;Parent=Physo132643;rank=6 scaffold_21 . exon 808997 809065 . + . ID=Physo132643.6;Parent=Physo132643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_21 . CDS 809137 809318 . + 0 ID=Physo132643;Parent=Physo132643;rank=7 scaffold_21 . exon 809137 809318 . + . ID=Physo132643.7;Parent=Physo132643;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_21 . CDS 809400 810574 . + 0 ID=Physo132643;Parent=Physo132643;rank=8 scaffold_21 . exon 809400 810574 . + . ID=Physo132643.8;Parent=Physo132643;constitutive=1;ensembl_phase=1;rank=8 scaffold_21 ensembl protein_coding_gene 810945 813779 . + . ID=Physo132644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210204;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 810945 813779 . + . ID=Physo132644;Parent=Physo132644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 810945 811474 . + 0 ID=Physo132644;Parent=Physo132644;rank=1 scaffold_21 . exon 810945 811474 . + . ID=Physo132644.1;Parent=Physo132644;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 . CDS 811533 811664 . + 0 ID=Physo132644;Parent=Physo132644;rank=2 scaffold_21 . exon 811533 811664 . + . ID=Physo132644.2;Parent=Physo132644;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_21 . CDS 811731 811805 . + 0 ID=Physo132644;Parent=Physo132644;rank=3 scaffold_21 . exon 811731 811805 . + . ID=Physo132644.3;Parent=Physo132644;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_21 . CDS 812050 812139 . + 0 ID=Physo132644;Parent=Physo132644;rank=4 scaffold_21 . exon 812050 812139 . + . ID=Physo132644.4;Parent=Physo132644;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_21 . CDS 812203 812271 . + 0 ID=Physo132644;Parent=Physo132644;rank=5 scaffold_21 . exon 812203 812271 . + . ID=Physo132644.5;Parent=Physo132644;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_21 . CDS 812360 812541 . + 0 ID=Physo132644;Parent=Physo132644;rank=6 scaffold_21 . exon 812360 812541 . + . ID=Physo132644.6;Parent=Physo132644;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_21 . CDS 812737 813779 . + 0 ID=Physo132644;Parent=Physo132644;rank=7 scaffold_21 . exon 812737 813779 . + . ID=Physo132644.7;Parent=Physo132644;constitutive=1;ensembl_phase=1;rank=7 scaffold_21 ensembl protein_coding_gene 815839 817396 . - . ID=Physo132645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210205;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 815839 817396 . - . ID=Physo132645;Parent=Physo132645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 815839 817396 . - . ID=Physo132645.1;Parent=Physo132645;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_21 . CDS 815882 817396 . - 0 ID=Physo132645;Parent=Physo132645;rank=1 scaffold_21 . repeat_region 817213 817234 . ? . description=trf scaffold_21 . repeat_region 820086 820121 . ? . description=trf scaffold_21 . repeat_region 822047 822233 . ? . description=trf scaffold_21 . repeat_region 822198 822896 . ? . description=trf scaffold_21 . repeat_region 822281 822565 . ? . description=trf scaffold_21 . repeat_region 822316 822338 . ? . description=trf scaffold_21 . repeat_region 822400 822422 . ? . description=trf scaffold_21 . repeat_region 822484 822506 . ? . description=trf scaffold_21 . repeat_region 822596 822880 . ? . description=trf scaffold_21 . repeat_region 822631 822653 . ? . description=trf scaffold_21 . repeat_region 822715 822737 . ? . description=trf scaffold_21 . repeat_region 822799 822821 . ? . description=trf scaffold_21 . repeat_region 822906 823019 . ? . description=trf scaffold_21 . repeat_region 823559 823606 . ? . description=trf scaffold_21 . repeat_region 823590 823673 . ? . description=trf scaffold_21 . repeat_region 823850 824034 . ? . description=trf scaffold_21 . repeat_region 824035 824075 . ? . description=trf scaffold_21 . repeat_region 824713 824738 . ? . description=trf scaffold_21 . repeat_region 825140 825176 . ? . description=trf scaffold_21 ensembl protein_coding_gene 819065 820018 . - . ID=Physo132646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210206;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 819065 820018 . - . ID=Physo132646;Parent=Physo132646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 819065 820018 . - 0 ID=Physo132646;Parent=Physo132646;rank=1 scaffold_21 . exon 819065 820018 . - . ID=Physo132646.1;Parent=Physo132646;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 820880 821758 . + . ID=Physo132647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210207;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 820880 821758 . + . ID=Physo132647;Parent=Physo132647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 820880 821758 . + 0 ID=Physo132647;Parent=Physo132647;rank=1 scaffold_21 . exon 820880 821758 . + . ID=Physo132647.1;Parent=Physo132647;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 822334 824945 . - . ID=Physo132648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210208;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 822334 824945 . - . ID=Physo132648;Parent=Physo132648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . exon 822334 822380 . - . ID=Physo132648.2;Parent=Physo132648;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_21 . CDS 822335 822380 . - 0 ID=Physo132648;Parent=Physo132648;rank=2 scaffold_21 . CDS 822499 824945 . - 0 ID=Physo132648;Parent=Physo132648;rank=1 scaffold_21 . exon 822499 824945 . - . ID=Physo132648.1;Parent=Physo132648;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_21 ensembl protein_coding_gene 825828 829637 . + . ID=Physo156545;biotype=protein_coding;external_name=C_scaffold_21000035;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 825828 829637 . + . ID=Physo156545;Parent=Physo156545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 825828 826304 . + 0 ID=Physo156545;Parent=Physo156545;rank=1 scaffold_21 . exon 825828 826304 . + . ID=Physo156545.1;Parent=Physo156545;constitutive=1;rank=1 scaffold_21 . CDS 826362 826909 . + 0 ID=Physo156545;Parent=Physo156545;rank=2 scaffold_21 . exon 826362 826909 . + . ID=Physo156545.2;Parent=Physo156545;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_21 . CDS 826946 827836 . + 0 ID=Physo156545;Parent=Physo156545;rank=3 scaffold_21 . CDS 827873 827876 . + 0 ID=Physo156545;Parent=Physo156545;rank=4 scaffold_21 . CDS 828442 828915 . + 0 ID=Physo156545;Parent=Physo156545;rank=5 scaffold_21 . CDS 828963 829637 . + 0 ID=Physo156545;Parent=Physo156545;rank=6 scaffold_21 . biological_region 828570 828571 0.999 + . logic_name=eponine scaffold_21 . biological_region 828605 828611 0.999 + . logic_name=eponine scaffold_21 . biological_region 828625 828632 0.999 + . logic_name=eponine scaffold_21 . biological_region 828659 828663 0.999 - . logic_name=eponine scaffold_21 . biological_region 828717 828721 0.999 - . logic_name=eponine scaffold_21 . biological_region 828887 828887 0.999 + . logic_name=eponine scaffold_21 . biological_region 831727 831730 0.999 - . logic_name=eponine scaffold_21 . repeat_region 834445 834461 . ? . description=dust scaffold_21 . repeat_region 834661 834714 . ? . description=dust scaffold_21 . repeat_region 834754 855405 . ? . description=dust scaffold_21 ensembl protein_coding_gene 830199 830828 . + . ID=Physo132650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210210;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 830199 830828 . + . ID=Physo132650;Parent=Physo132650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 830199 830828 . + 0 ID=Physo132650;Parent=Physo132650;rank=1 scaffold_21 . exon 830199 830828 . + . ID=Physo132650.1;Parent=Physo132650;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 831568 832590 . + . ID=Physo132651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210211;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 831568 832590 . + . ID=Physo132651;Parent=Physo132651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 831568 832590 . + 0 ID=Physo132651;Parent=Physo132651;rank=1 scaffold_21 . exon 831568 832590 . + . ID=Physo132651.1;Parent=Physo132651;constitutive=1;rank=1 scaffold_21 ensembl protein_coding_gene 832727 834550 . - . ID=Physo132652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_210212;logic_name=jgi_physo1_1 scaffold_21 ensembl transcript 832727 834550 . - . ID=Physo132652;Parent=Physo132652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_21 . CDS 832727 833944 . - 0 ID=Physo132652;Parent=Physo132652;rank=4 scaffold_21 . exon 832727 833944 . - . ID=Physo132652.4;Parent=Physo132652;constitutive=1;rank=4 scaffold_21 . CDS 834020 834172 . - 0 ID=Physo132652;Parent=Physo132652;rank=3 scaffold_21 . exon 834020 834172 . - . ID=Physo132652.3;Parent=Physo132652;constitutive=1;rank=3 scaffold_21 . CDS 834254 834406 . - 0 ID=Physo132652;Parent=Physo132652;rank=2 scaffold_21 . exon 834254 834406 . - . ID=Physo132652.2;Parent=Physo132652;constitutive=1;rank=2 scaffold_21 . CDS 834482 834550 . - 0 ID=Physo132652;Parent=Physo132652;rank=1 scaffold_21 . exon 834482 834550 . - . ID=Physo132652.1;Parent=Physo132652;constitutive=1;rank=1 scaffold_21 . exon 826946 827836 . + . ID=Physo156545.3;Parent=Physo156545;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_21 . exon 827873 827876 . + . ID=Physo156545.4;Parent=Physo156545;constitutive=1;ensembl_phase=2;rank=4 scaffold_21 . exon 828442 828915 . + . ID=Physo156545.5;Parent=Physo156545;constitutive=1;rank=5 scaffold_21 . exon 828963 829637 . + . ID=Physo156545.6;Parent=Physo156545;constitutive=1;rank=6 scaffold_21 . repeat_region 834754 855405 . ? . description=dust ##gff-version 3 ##sequence-region scaffold_20 1 858589 scaffold_20 . biological_region 615 620 0.999 - . logic_name=eponine scaffold_20 . repeat_region 2569 2608 . ? . description=dust scaffold_20 . biological_region 2985 2990 0.999 + . logic_name=eponine scaffold_20 . biological_region 3407 3412 0.999 - . logic_name=eponine scaffold_20 . repeat_region 3676 3722 . + . description=(ATCG)n scaffold_20 . repeat_region 3683 3713 . ? . description=trf scaffold_20 . repeat_region 3683 3713 . ? . description=dust scaffold_20 . repeat_region 3808 3856 . ? . description=trf scaffold_20 . repeat_region 3900 3943 . ? . description=trf scaffold_20 . repeat_region 3942 4023 . ? . description=trf scaffold_20 . repeat_region 3996 4039 . ? . description=trf scaffold_20 . repeat_region 4251 4272 . ? . description=dust scaffold_20 . biological_region 5096 5096 0.999 + . logic_name=eponine scaffold_20 . biological_region 5202 5203 0.999 - . logic_name=eponine scaffold_20 . biological_region 5224 5229 0.999 - . logic_name=eponine scaffold_20 . repeat_region 5493 5539 . + . description=(ATCG)n scaffold_20 . repeat_region 5495 5530 . ? . description=trf scaffold_20 . repeat_region 5499 5530 . ? . description=dust scaffold_20 . repeat_region 5625 5673 . ? . description=trf scaffold_20 . repeat_region 5714 5750 . ? . description=trf scaffold_20 . repeat_region 5714 5759 . ? . description=trf scaffold_20 . repeat_region 5717 5763 . ? . description=trf scaffold_20 . repeat_region 5762 5843 . ? . description=trf scaffold_20 . repeat_region 5816 5859 . ? . description=trf scaffold_20 . repeat_region 6071 6092 . ? . description=dust scaffold_20 . repeat_region 6476 6522 . + . description=(ATCG)n scaffold_20 . repeat_region 6485 6516 . ? . description=dust scaffold_20 . repeat_region 6485 6520 . ? . description=trf scaffold_20 . biological_region 7848 7854 0.999 + . logic_name=eponine scaffold_20 . biological_region 7874 7878 0.999 + . logic_name=eponine scaffold_20 . biological_region 7890 7891 0.999 + . logic_name=eponine scaffold_20 . biological_region 7995 8003 0.999 - . logic_name=eponine scaffold_20 . repeat_region 8071 8081 . ? . description=dust scaffold_20 . biological_region 8111 8116 0.999 + . logic_name=eponine scaffold_20 . biological_region 8726 8728 0.999 + . logic_name=eponine scaffold_20 . biological_region 8743 8746 0.999 - . logic_name=eponine scaffold_20 . repeat_region 9349 9362 . ? . description=dust scaffold_20 ensembl protein_coding_gene 1119 2552 . - . ID=Physo132229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200001;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 1119 2552 . - . ID=Physo132229;Parent=Physo132229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 1119 1164 . - 0 ID=Physo132229;Parent=Physo132229;rank=4 scaffold_20 . exon 1119 1164 . - . ID=Physo132229.4;Parent=Physo132229;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 1217 1473 . - 0 ID=Physo132229;Parent=Physo132229;rank=3 scaffold_20 . exon 1217 1473 . - . ID=Physo132229.3;Parent=Physo132229;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 1638 1762 . - 0 ID=Physo132229;Parent=Physo132229;rank=2 scaffold_20 . exon 1638 1762 . - . ID=Physo132229.2;Parent=Physo132229;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 1910 2552 . - 0 ID=Physo132229;Parent=Physo132229;rank=1 scaffold_20 . exon 1910 2552 . - . ID=Physo132229.1;Parent=Physo132229;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 3740 4186 . - . ID=Physo132230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200002;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 3740 4186 . - . ID=Physo132230;Parent=Physo132230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 3740 4186 . - 0 ID=Physo132230;Parent=Physo132230;rank=1 scaffold_20 . exon 3740 4186 . - . ID=Physo132230.1;Parent=Physo132230;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 5557 6006 . - . ID=Physo132231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200003;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 5557 6006 . - . ID=Physo132231;Parent=Physo132231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 5557 6006 . - 0 ID=Physo132231;Parent=Physo132231;rank=1 scaffold_20 . exon 5557 6006 . - . ID=Physo132231.1;Parent=Physo132231;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 6832 8009 . - . ID=Physo132232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200004;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 6832 8009 . - . ID=Physo132232;Parent=Physo132232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 6832 7647 . - . ID=Physo132232.3;Parent=Physo132232;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_20 . CDS 6907 7647 . - 0 ID=Physo132232;Parent=Physo132232;rank=3 scaffold_20 . CDS 7709 7773 . - 0 ID=Physo132232;Parent=Physo132232;rank=2 scaffold_20 . exon 7709 7773 . - . ID=Physo132232.2;Parent=Physo132232;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 7851 7974 . - 0 ID=Physo132232;Parent=Physo132232;rank=1 scaffold_20 . exon 7851 8009 . - . ID=Physo132232.1;Parent=Physo132232;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_20 ensembl protein_coding_gene 8523 9362 . + . ID=Physo132233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200005;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 8523 9362 . + . ID=Physo132233;Parent=Physo132233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 8523 9362 . + . ID=Physo132233.1;Parent=Physo132233;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 8617 9240 . + 0 ID=Physo132233;Parent=Physo132233;rank=1 scaffold_20 ensembl protein_coding_gene 9492 11669 . - . ID=Physo132234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200006;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 9492 11669 . - . ID=Physo132234;Parent=Physo132234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 9492 11669 . - 0 ID=Physo132234;Parent=Physo132234;rank=1 scaffold_20 . exon 9492 11669 . - . ID=Physo132234.1;Parent=Physo132234;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 12973 22103 . - . ID=Physo156475;biotype=protein_coding;external_name=C_scaffold_20000001;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 12973 22103 . - . ID=Physo156475;Parent=Physo156475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 12973 13197 . - 0 ID=Physo156475;Parent=Physo156475;rank=20 scaffold_20 . exon 12973 13197 . - . ID=Physo156475.20;Parent=Physo156475;constitutive=1;rank=20 scaffold_20 . CDS 13222 13638 . - 0 ID=Physo156475;Parent=Physo156475;rank=19 scaffold_20 . exon 13222 13638 . - . ID=Physo156475.19;Parent=Physo156475;constitutive=1;rank=19 scaffold_20 . CDS 13678 14010 . - 0 ID=Physo156475;Parent=Physo156475;rank=18 scaffold_20 . exon 13678 14010 . - . ID=Physo156475.18;Parent=Physo156475;constitutive=1;rank=18 scaffold_20 . CDS 14131 14342 . - 0 ID=Physo156475;Parent=Physo156475;rank=17 scaffold_20 . exon 14131 14342 . - . ID=Physo156475.17;Parent=Physo156475;constitutive=1;ensembl_phase=1;rank=17 scaffold_20 . CDS 14589 15264 . - 0 ID=Physo156475;Parent=Physo156475;rank=16 scaffold_20 . exon 14589 15264 . - . ID=Physo156475.16;Parent=Physo156475;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_20 . CDS 15286 15726 . - 0 ID=Physo156475;Parent=Physo156475;rank=15 scaffold_20 . exon 15286 15726 . - . ID=Physo156475.15;Parent=Physo156475;constitutive=1;rank=15 scaffold_20 . CDS 15829 16331 . - 0 ID=Physo156475;Parent=Physo156475;rank=14 scaffold_20 . exon 15829 16331 . - . ID=Physo156475.14;Parent=Physo156475;constitutive=1;ensembl_phase=1;rank=14 scaffold_20 . CDS 16449 16604 . - 0 ID=Physo156475;Parent=Physo156475;rank=13 scaffold_20 . exon 16449 16604 . - . ID=Physo156475.13;Parent=Physo156475;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_20 . CDS 16632 16952 . - 0 ID=Physo156475;Parent=Physo156475;rank=12 scaffold_20 . exon 16632 16952 . - . ID=Physo156475.12;Parent=Physo156475;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_20 . CDS 17307 17556 . - 0 ID=Physo156475;Parent=Physo156475;rank=11 scaffold_20 . exon 17307 17556 . - . ID=Physo156475.11;Parent=Physo156475;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_20 . CDS 17620 17874 . - 0 ID=Physo156475;Parent=Physo156475;rank=10 scaffold_20 . exon 17620 17874 . - . ID=Physo156475.10;Parent=Physo156475;constitutive=1;rank=10 scaffold_20 . CDS 17905 18145 . - 0 ID=Physo156475;Parent=Physo156475;rank=9 scaffold_20 . exon 17905 18145 . - . ID=Physo156475.9;Parent=Physo156475;constitutive=1;ensembl_phase=2;rank=9 scaffold_20 . CDS 18371 18532 . - 0 ID=Physo156475;Parent=Physo156475;rank=8 scaffold_20 . exon 18371 18532 . - . ID=Physo156475.8;Parent=Physo156475;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_20 . CDS 18647 18972 . - 0 ID=Physo156475;Parent=Physo156475;rank=7 scaffold_20 . exon 18647 18972 . - . ID=Physo156475.7;Parent=Physo156475;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_20 . CDS 19114 19127 . - 0 ID=Physo156475;Parent=Physo156475;rank=6 scaffold_20 . exon 19114 19127 . - . ID=Physo156475.6;Parent=Physo156475;constitutive=1;ensembl_phase=1;rank=6 scaffold_20 . CDS 19240 20286 . - 0 ID=Physo156475;Parent=Physo156475;rank=5 scaffold_20 . exon 19240 20286 . - . ID=Physo156475.5;Parent=Physo156475;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 20356 20922 . - 0 ID=Physo156475;Parent=Physo156475;rank=4 scaffold_20 . CDS 21496 21722 . - 0 ID=Physo156475;Parent=Physo156475;rank=3 scaffold_20 . CDS 21819 22021 . - 0 ID=Physo156475;Parent=Physo156475;rank=2 scaffold_20 . CDS 22044 22103 . - 0 ID=Physo156475;Parent=Physo156475;rank=1 scaffold_20 . biological_region 21313 21316 0.999 + . logic_name=eponine scaffold_20 . biological_region 21716 21719 0.999 - . logic_name=eponine scaffold_20 . biological_region 23435 23440 0.999 - . logic_name=eponine scaffold_20 . biological_region 23492 23497 0.999 + . logic_name=eponine scaffold_20 . biological_region 23498 23505 0.999 - . logic_name=eponine scaffold_20 . biological_region 23527 23532 0.999 - . logic_name=eponine scaffold_20 . biological_region 23554 23555 0.999 + . logic_name=eponine scaffold_20 . biological_region 24557 24560 0.999 - . logic_name=eponine scaffold_20 . biological_region 24610 24618 0.999 + . logic_name=eponine scaffold_20 . biological_region 24630 24635 0.999 + . logic_name=eponine scaffold_20 . biological_region 24706 24711 0.999 - . logic_name=eponine scaffold_20 . biological_region 24749 24752 0.999 + . logic_name=eponine scaffold_20 . biological_region 24790 24790 0.999 - . logic_name=eponine scaffold_20 . biological_region 26602 26604 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 26453 28135 . + . ID=Physo132237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200009;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 26453 28135 . + . ID=Physo132237;Parent=Physo132237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 26453 28135 . + 0 ID=Physo132237;Parent=Physo132237;rank=1 scaffold_20 . exon 26453 28135 . + . ID=Physo132237.1;Parent=Physo132237;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 28199 29589 . - . ID=Physo132238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200010;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 28199 29589 . - . ID=Physo132238;Parent=Physo132238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 28199 28620 . - 0 ID=Physo132238;Parent=Physo132238;rank=4 scaffold_20 . exon 28199 28620 . - . ID=Physo132238.4;Parent=Physo132238;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 28821 29173 . - 0 ID=Physo132238;Parent=Physo132238;rank=3 scaffold_20 . exon 28821 29173 . - . ID=Physo132238.3;Parent=Physo132238;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 29193 29217 . - 0 ID=Physo132238;Parent=Physo132238;rank=2 scaffold_20 . exon 29193 29217 . - . ID=Physo132238.2;Parent=Physo132238;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 29283 29589 . - 0 ID=Physo132238;Parent=Physo132238;rank=1 scaffold_20 . exon 29283 29589 . - . ID=Physo132238.1;Parent=Physo132238;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . exon 20356 20922 . - . ID=Physo156475.4;Parent=Physo156475;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_20 . exon 21496 21722 . - . ID=Physo156475.3;Parent=Physo156475;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_20 . exon 21819 22021 . - . ID=Physo156475.2;Parent=Physo156475;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_20 . exon 22044 22103 . - . ID=Physo156475.1;Parent=Physo156475;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 23127 24861 . - . ID=Physo156476;biotype=protein_coding;external_name=C_scaffold_20000002;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 23127 24861 . - . ID=Physo156476;Parent=Physo156476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 23127 24250 . - 0 ID=Physo156476;Parent=Physo156476;rank=2 scaffold_20 . exon 23127 24250 . - . ID=Physo156476.2;Parent=Physo156476;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 24318 24861 . - 0 ID=Physo156476;Parent=Physo156476;rank=1 scaffold_20 . exon 24318 24861 . - . ID=Physo156476.1;Parent=Physo156476;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . repeat_region 37801 37809 . ? . description=dust scaffold_20 . repeat_region 39513 39534 . ? . description=dust scaffold_20 ensembl protein_coding_gene 29996 31678 . + . ID=Physo132239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200011;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 29996 31678 . + . ID=Physo132239;Parent=Physo132239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 29996 30558 . + . ID=Physo132239.1;Parent=Physo132239;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 30027 30558 . + 0 ID=Physo132239;Parent=Physo132239;rank=1 scaffold_20 . CDS 30630 31678 . + 0 ID=Physo132239;Parent=Physo132239;rank=2 scaffold_20 . exon 30630 31678 . + . ID=Physo132239.2;Parent=Physo132239;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 31957 33505 . + . ID=Physo132240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200012;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 31957 33505 . + . ID=Physo132240;Parent=Physo132240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 31957 32404 . + 0 ID=Physo132240;Parent=Physo132240;rank=1 scaffold_20 . exon 31957 32404 . + . ID=Physo132240.1;Parent=Physo132240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 32463 33505 . + 0 ID=Physo132240;Parent=Physo132240;rank=2 scaffold_20 . exon 32463 33505 . + . ID=Physo132240.2;Parent=Physo132240;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 33775 35393 . + . ID=Physo132241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200013;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 33775 35393 . + . ID=Physo132241;Parent=Physo132241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 33775 34282 . + 0 ID=Physo132241;Parent=Physo132241;rank=1 scaffold_20 . exon 33775 34282 . + . ID=Physo132241.1;Parent=Physo132241;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 34354 35393 . + 0 ID=Physo132241;Parent=Physo132241;rank=2 scaffold_20 . exon 34354 35393 . + . ID=Physo132241.2;Parent=Physo132241;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 35448 35910 . - . ID=Physo132242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200014;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 35448 35910 . - . ID=Physo132242;Parent=Physo132242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 35448 35687 . - 0 ID=Physo132242;Parent=Physo132242;rank=3 scaffold_20 . exon 35448 35687 . - . ID=Physo132242.3;Parent=Physo132242;constitutive=1;rank=3 scaffold_20 . CDS 35770 35802 . - 0 ID=Physo132242;Parent=Physo132242;rank=2 scaffold_20 . exon 35770 35802 . - . ID=Physo132242.2;Parent=Physo132242;constitutive=1;rank=2 scaffold_20 . CDS 35872 35910 . - 0 ID=Physo132242;Parent=Physo132242;rank=1 scaffold_20 . exon 35872 35910 . - . ID=Physo132242.1;Parent=Physo132242;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 36225 36935 . + . ID=Physo132243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200015;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 36225 36935 . + . ID=Physo132243;Parent=Physo132243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 36225 36935 . + 0 ID=Physo132243;Parent=Physo132243;rank=1 scaffold_20 . exon 36225 36935 . + . ID=Physo132243.1;Parent=Physo132243;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 37863 38876 . + . ID=Physo132244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200016;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 37863 38876 . + . ID=Physo132244;Parent=Physo132244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 37863 38876 . + 0 ID=Physo132244;Parent=Physo132244;rank=1 scaffold_20 . exon 37863 38876 . + . ID=Physo132244.1;Parent=Physo132244;constitutive=1;rank=1 scaffold_20 . biological_region 40673 40676 0.999 - . logic_name=eponine scaffold_20 . biological_region 40730 40730 0.999 + . logic_name=eponine scaffold_20 . repeat_region 43019 43044 . ? . description=trf scaffold_20 . biological_region 44514 44514 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 40264 41086 . - . ID=Physo132245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200017;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 40264 41086 . - . ID=Physo132245;Parent=Physo132245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 40264 40383 . - . ID=Physo132245.2;Parent=Physo132245;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_20 . exon 40455 41086 . - . ID=Physo132245.1;Parent=Physo132245;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_20 . CDS 40511 41086 . - 0 ID=Physo132245;Parent=Physo132245;rank=1 scaffold_20 ensembl protein_coding_gene 44188 44676 . - . ID=Physo132246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200018;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 44188 44676 . - . ID=Physo132246;Parent=Physo132246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 44188 44676 . - 0 ID=Physo132246;Parent=Physo132246;rank=1 scaffold_20 . exon 44188 44676 . - . ID=Physo132246.1;Parent=Physo132246;constitutive=1;rank=1 scaffold_20 . repeat_region 50163 50171 . ? . description=dust scaffold_20 . repeat_region 50476 50487 . ? . description=dust scaffold_20 . repeat_region 52669 52679 . ? . description=dust scaffold_20 . repeat_region 53620 53627 . ? . description=dust scaffold_20 . repeat_region 55575 55582 . ? . description=dust scaffold_20 . repeat_region 56180 56210 . ? . description=dust scaffold_20 . repeat_region 57147 57451 . ? . description=dust scaffold_20 . repeat_region 58586 58612 . ? . description=dust scaffold_20 . repeat_region 59037 59214 . ? . description=dust scaffold_20 . repeat_region 59215 59330 . ? . description=dust scaffold_20 ensembl tRNA_gene 56578 56650 . + . ID=EPrPSOG00000000086;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_20 ensembl transcript 56578 56650 . + . ID=EPrPSOT00000000086;Parent=EPrPSOG00000000086;biotype=tRNA;logic_name=ncrna_eg scaffold_20 ensembl tRNA_gene 58146 58218 . - . ID=EPrPSOG00000000225;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_20 ensembl transcript 58146 58218 . - . ID=EPrPSOT00000000225;Parent=EPrPSOG00000000225;biotype=tRNA;logic_name=ncrna_eg scaffold_20 . exon 56578 56650 . + . ID=EPrPSOE00000000086;Parent=EPrPSOT00000000086;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . exon 58146 58218 . - . ID=EPrPSOE00000000225;Parent=EPrPSOT00000000225;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . repeat_region 61946 61970 . ? . description=trf scaffold_20 . biological_region 62638 62639 0.999 + . logic_name=eponine scaffold_20 . biological_region 62656 62657 0.999 + . logic_name=eponine scaffold_20 . repeat_region 66067 66107 . ? . description=trf scaffold_20 . biological_region 66421 66425 0.999 + . logic_name=eponine scaffold_20 . biological_region 66487 66489 0.999 - . logic_name=eponine scaffold_20 ensembl tRNA_gene 61506 61578 . - . ID=EPrPSOG00000000118;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_20 ensembl transcript 61506 61578 . - . ID=EPrPSOT00000000118;Parent=EPrPSOG00000000118;biotype=tRNA;logic_name=ncrna_eg scaffold_20 . exon 61506 61578 . - . ID=EPrPSOE00000000118;Parent=EPrPSOT00000000118;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . repeat_region 75971 75978 . ? . description=dust scaffold_20 . biological_region 79912 79914 0.999 + . logic_name=eponine scaffold_20 . biological_region 79949 79953 0.999 + . logic_name=eponine scaffold_20 . biological_region 79972 79976 0.999 - . logic_name=eponine scaffold_20 . biological_region 79988 79992 0.999 + . logic_name=eponine scaffold_20 . biological_region 80009 80010 0.999 - . logic_name=eponine scaffold_20 . biological_region 80028 80032 0.999 + . logic_name=eponine scaffold_20 . repeat_region 80715 83072 . + . description=GypsyPi-1c_I-int scaffold_20 . repeat_region 83342 83620 . + . description=GypsyPi-1c_I-int scaffold_20 . repeat_region 84228 84268 . ? . description=trf scaffold_20 . biological_region 84939 84939 0.999 - . logic_name=eponine scaffold_20 . biological_region 85904 85905 0.999 + . logic_name=eponine scaffold_20 . biological_region 86049 86051 0.999 - . logic_name=eponine scaffold_20 . repeat_region 86141 86164 . ? . description=trf scaffold_20 . repeat_region 87504 87672 . + . description=(CAG)n scaffold_20 . repeat_region 89269 89297 . ? . description=trf scaffold_20 ensembl protein_coding_gene 80344 83384 . + . ID=Physo132247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200019;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 80344 83384 . + . ID=Physo132247;Parent=Physo132247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 80344 80807 . + 0 ID=Physo132247;Parent=Physo132247;rank=1 scaffold_20 . exon 80344 80807 . + . ID=Physo132247.1;Parent=Physo132247;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 80922 81218 . + 0 ID=Physo132247;Parent=Physo132247;rank=2 scaffold_20 . exon 80922 81218 . + . ID=Physo132247.2;Parent=Physo132247;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_20 . CDS 81289 81390 . + 0 ID=Physo132247;Parent=Physo132247;rank=3 scaffold_20 . exon 81289 81390 . + . ID=Physo132247.3;Parent=Physo132247;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_20 . CDS 81740 82397 . + 0 ID=Physo132247;Parent=Physo132247;rank=4 scaffold_20 . exon 81740 82397 . + . ID=Physo132247.4;Parent=Physo132247;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 82448 83337 . + 0 ID=Physo132247;Parent=Physo132247;rank=5 scaffold_20 . exon 82448 83337 . + . ID=Physo132247.5;Parent=Physo132247;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_20 . CDS 83378 83384 . + 0 ID=Physo132247;Parent=Physo132247;rank=6 scaffold_20 . exon 83378 83384 . + . ID=Physo132247.6;Parent=Physo132247;constitutive=1;ensembl_phase=2;rank=6 scaffold_20 ensembl protein_coding_gene 84498 86402 . - . ID=Physo132248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200020;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 84498 86402 . - . ID=Physo132248;Parent=Physo132248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 84498 86064 . - 0 ID=Physo132248;Parent=Physo132248;rank=2 scaffold_20 . exon 84498 86064 . - . ID=Physo132248.2;Parent=Physo132248;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 86380 86402 . - 0 ID=Physo132248;Parent=Physo132248;rank=1 scaffold_20 . exon 86380 86402 . - . ID=Physo132248.1;Parent=Physo132248;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 86796 87797 . + . ID=Physo132249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200021;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 86796 87797 . + . ID=Physo132249;Parent=Physo132249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 86796 86953 . + 0 ID=Physo132249;Parent=Physo132249;rank=1 scaffold_20 . exon 86796 86953 . + . ID=Physo132249.1;Parent=Physo132249;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 87013 87186 . + 0 ID=Physo132249;Parent=Physo132249;rank=2 scaffold_20 . exon 87013 87186 . + . ID=Physo132249.2;Parent=Physo132249;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_20 . CDS 87242 87797 . + 0 ID=Physo132249;Parent=Physo132249;rank=3 scaffold_20 . exon 87242 87797 . + . ID=Physo132249.3;Parent=Physo132249;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . repeat_region 90043 90050 . ? . description=dust scaffold_20 . repeat_region 92941 92990 . ? . description=dust scaffold_20 . repeat_region 94324 94373 . ? . description=dust scaffold_20 . repeat_region 95669 95718 . ? . description=dust scaffold_20 ensembl protein_coding_gene 92333 94131 . + . ID=Physo132250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200022;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 92333 94131 . + . ID=Physo132250;Parent=Physo132250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 92333 92345 . + 0 ID=Physo132250;Parent=Physo132250;rank=1 scaffold_20 . exon 92333 92345 . + . ID=Physo132250.1;Parent=Physo132250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 92523 92936 . + 0 ID=Physo132250;Parent=Physo132250;rank=2 scaffold_20 . exon 92523 92936 . + . ID=Physo132250.2;Parent=Physo132250;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 93043 94084 . + 0 ID=Physo132250;Parent=Physo132250;rank=3 scaffold_20 . exon 93043 94084 . + . ID=Physo132250.3;Parent=Physo132250;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_20 . CDS 94125 94131 . + 0 ID=Physo132250;Parent=Physo132250;rank=4 scaffold_20 . exon 94125 94131 . + . ID=Physo132250.4;Parent=Physo132250;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 ensembl protein_coding_gene 96336 97406 . + . ID=Physo132251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200023;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 96336 97406 . + . ID=Physo132251;Parent=Physo132251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 96336 97406 . + 0 ID=Physo132251;Parent=Physo132251;rank=1 scaffold_20 . exon 96336 97406 . + . ID=Physo132251.1;Parent=Physo132251;constitutive=1;rank=1 scaffold_20 . biological_region 101584 101588 0.999 + . logic_name=eponine scaffold_20 . biological_region 101604 101611 0.999 + . logic_name=eponine scaffold_20 . biological_region 101676 101681 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 99905 102027 . + . ID=Physo132252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200024;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 99905 102027 . + . ID=Physo132252;Parent=Physo132252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 99905 99913 . + 0 ID=Physo132252;Parent=Physo132252;rank=1 scaffold_20 . exon 99905 99913 . + . ID=Physo132252.1;Parent=Physo132252;constitutive=1;rank=1 scaffold_20 . CDS 99961 100383 . + 0 ID=Physo132252;Parent=Physo132252;rank=2 scaffold_20 . exon 99961 100383 . + . ID=Physo132252.2;Parent=Physo132252;constitutive=1;rank=2 scaffold_20 . CDS 100416 101838 . + 0 ID=Physo132252;Parent=Physo132252;rank=3 scaffold_20 . exon 100416 101838 . + . ID=Physo132252.3;Parent=Physo132252;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 102002 102027 . + 0 ID=Physo132252;Parent=Physo132252;rank=4 scaffold_20 . exon 102002 102027 . + . ID=Physo132252.4;Parent=Physo132252;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 ensembl protein_coding_gene 103321 103860 . + . ID=Physo132253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200025;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 103321 103860 . + . ID=Physo132253;Parent=Physo132253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 103321 103860 . + 0 ID=Physo132253;Parent=Physo132253;rank=1 scaffold_20 . exon 103321 103860 . + . ID=Physo132253.1;Parent=Physo132253;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 104368 105411 . - . ID=Physo132254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200026;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 104368 105411 . - . ID=Physo132254;Parent=Physo132254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 104368 105411 . - 0 ID=Physo132254;Parent=Physo132254;rank=1 scaffold_20 . exon 104368 105411 . - . ID=Physo132254.1;Parent=Physo132254;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 106583 107248 . - . ID=Physo132255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200027;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 106583 107248 . - . ID=Physo132255;Parent=Physo132255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 106583 107248 . - 0 ID=Physo132255;Parent=Physo132255;rank=1 scaffold_20 . exon 106583 107248 . - . ID=Physo132255.1;Parent=Physo132255;constitutive=1;rank=1 scaffold_20 . repeat_region 110690 110698 . ? . description=dust scaffold_20 . repeat_region 115280 115448 . + . description=(CAG)n scaffold_20 ensembl protein_coding_gene 111733 113820 . + . ID=Physo132256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200028;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 111733 113820 . + . ID=Physo132256;Parent=Physo132256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 111733 113820 . + 0 ID=Physo132256;Parent=Physo132256;rank=1 scaffold_20 . exon 111733 113820 . + . ID=Physo132256.1;Parent=Physo132256;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 114571 115761 . + . ID=Physo132257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200029;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 114571 115761 . + . ID=Physo132257;Parent=Physo132257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 114571 114962 . + 0 ID=Physo132257;Parent=Physo132257;rank=1 scaffold_20 . exon 114571 114962 . + . ID=Physo132257.1;Parent=Physo132257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 115018 115451 . + 0 ID=Physo132257;Parent=Physo132257;rank=2 scaffold_20 . exon 115018 115451 . + . ID=Physo132257.2;Parent=Physo132257;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 115751 115761 . + 0 ID=Physo132257;Parent=Physo132257;rank=3 scaffold_20 . exon 115751 115761 . + . ID=Physo132257.3;Parent=Physo132257;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 ensembl protein_coding_gene 116701 117711 . + . ID=Physo132258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200030;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 116701 117711 . + . ID=Physo132258;Parent=Physo132258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 116701 117711 . + 0 ID=Physo132258;Parent=Physo132258;rank=1 scaffold_20 . exon 116701 117711 . + . ID=Physo132258.1;Parent=Physo132258;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 117995 118996 . + . ID=Physo132259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200031;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 117995 118996 . + . ID=Physo132259;Parent=Physo132259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 117995 118996 . + 0 ID=Physo132259;Parent=Physo132259;rank=1 scaffold_20 . exon 117995 118996 . + . ID=Physo132259.1;Parent=Physo132259;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 119453 120478 . + . ID=Physo132260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200032;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 119453 120478 . + . ID=Physo132260;Parent=Physo132260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 119453 120478 . + 0 ID=Physo132260;Parent=Physo132260;rank=1 scaffold_20 . exon 119453 120478 . + . ID=Physo132260.1;Parent=Physo132260;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 120926 121990 . + . ID=Physo132261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200033;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 120926 121990 . + . ID=Physo132261;Parent=Physo132261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 120926 121990 . + 0 ID=Physo132261;Parent=Physo132261;rank=1 scaffold_20 . exon 120926 121990 . + . ID=Physo132261.1;Parent=Physo132261;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 123064 124196 . + . ID=Physo132262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200034;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 123064 124196 . + . ID=Physo132262;Parent=Physo132262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 123064 124152 . + 0 ID=Physo132262;Parent=Physo132262;rank=1 scaffold_20 . exon 123064 124196 . + . ID=Physo132262.1;Parent=Physo132262;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_20 ensembl protein_coding_gene 125721 126824 . + . ID=Physo132263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200035;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 125721 126824 . + . ID=Physo132263;Parent=Physo132263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 125721 125818 . + . ID=Physo132263.1;Parent=Physo132263;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 125753 125818 . + 0 ID=Physo132263;Parent=Physo132263;rank=1 scaffold_20 . CDS 125844 126824 . + 0 ID=Physo132263;Parent=Physo132263;rank=2 scaffold_20 . exon 125844 126824 . + . ID=Physo132263.2;Parent=Physo132263;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 127361 128461 . + . ID=Physo132264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200036;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 127361 128461 . + . ID=Physo132264;Parent=Physo132264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 127361 128461 . + 0 ID=Physo132264;Parent=Physo132264;rank=1 scaffold_20 . exon 127361 128461 . + . ID=Physo132264.1;Parent=Physo132264;constitutive=1;rank=1 scaffold_20 . repeat_region 131568 131576 . ? . description=dust scaffold_20 . biological_region 131643 131644 0.999 + . logic_name=eponine scaffold_20 . repeat_region 132877 132884 . ? . description=dust scaffold_20 . repeat_region 136549 136624 . + . description=SSU-rRNA_Tps scaffold_20 . biological_region 138572 138575 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 136188 136633 . + . ID=Physo114538;biotype=protein_coding;external_name=estExt_Genewise1.C_200174;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 136188 136633 . + . ID=Physo114538;Parent=Physo114538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 136188 136235 . + . ID=Physo114538.1;Parent=Physo114538;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 136190 136235 . + 0 ID=Physo114538;Parent=Physo114538;rank=1 scaffold_20 . CDS 136282 136286 . + 0 ID=Physo114538;Parent=Physo114538;rank=2 scaffold_20 . exon 136282 136633 . + . ID=Physo114538.2;Parent=Physo114538;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 131731 132800 . + . ID=Physo132265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200037;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 131731 132800 . + . ID=Physo132265;Parent=Physo132265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 131731 131913 . + 0 ID=Physo132265;Parent=Physo132265;rank=1 scaffold_20 . exon 131731 131913 . + . ID=Physo132265.1;Parent=Physo132265;constitutive=1;rank=1 scaffold_20 . CDS 131949 132800 . + 0 ID=Physo132265;Parent=Physo132265;rank=2 scaffold_20 . exon 131949 132800 . + . ID=Physo132265.2;Parent=Physo132265;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 133337 134407 . + . ID=Physo132266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200038;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 133337 134407 . + . ID=Physo132266;Parent=Physo132266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 133337 134407 . + 0 ID=Physo132266;Parent=Physo132266;rank=1 scaffold_20 . exon 133337 134407 . + . ID=Physo132266.1;Parent=Physo132266;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 134855 135860 . + . ID=Physo132267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200039;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 134855 135860 . + . ID=Physo132267;Parent=Physo132267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 134855 135497 . + 0 ID=Physo132267;Parent=Physo132267;rank=1 scaffold_20 . exon 134855 135497 . + . ID=Physo132267.1;Parent=Physo132267;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 135553 135860 . + 0 ID=Physo132267;Parent=Physo132267;rank=2 scaffold_20 . exon 135553 135860 . + . ID=Physo132267.2;Parent=Physo132267;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 137509 138909 . + . ID=Physo132268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200040;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 137509 138909 . + . ID=Physo132268;Parent=Physo132268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 137509 138909 . + . ID=Physo132268.1;Parent=Physo132268;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 137578 138909 . + 0 ID=Physo132268;Parent=Physo132268;rank=1 scaffold_20 ensembl protein_coding_gene 139042 139836 . - . ID=Physo132269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200041;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 139042 139836 . - . ID=Physo132269;Parent=Physo132269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 139042 139836 . - 0 ID=Physo132269;Parent=Physo132269;rank=1 scaffold_20 . exon 139042 139836 . - . ID=Physo132269.1;Parent=Physo132269;constitutive=1;rank=1 scaffold_20 . repeat_region 143165 143186 . ? . description=trf scaffold_20 ensembl protein_coding_gene 140026 142305 . - . ID=Physo132270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200042;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 140026 142305 . - . ID=Physo132270;Parent=Physo132270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 140026 141819 . - . ID=Physo132270.2;Parent=Physo132270;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_20 . CDS 140121 141819 . - 0 ID=Physo132270;Parent=Physo132270;rank=2 scaffold_20 . CDS 141917 142305 . - 0 ID=Physo132270;Parent=Physo132270;rank=1 scaffold_20 . exon 141917 142305 . - . ID=Physo132270.1;Parent=Physo132270;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 146150 146530 . - . ID=Physo132271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200043;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 146150 146530 . - . ID=Physo132271;Parent=Physo132271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 146150 146530 . - 0 ID=Physo132271;Parent=Physo132271;rank=1 scaffold_20 . exon 146150 146530 . - . ID=Physo132271.1;Parent=Physo132271;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 147444 151564 . + . ID=Physo132272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200044;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 147444 151564 . + . ID=Physo132272;Parent=Physo132272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 147444 147653 . + 0 ID=Physo132272;Parent=Physo132272;rank=1 scaffold_20 . exon 147444 147653 . + . ID=Physo132272.1;Parent=Physo132272;constitutive=1;rank=1 scaffold_20 . CDS 147754 148548 . + 0 ID=Physo132272;Parent=Physo132272;rank=2 scaffold_20 . exon 147754 148548 . + . ID=Physo132272.2;Parent=Physo132272;constitutive=1;rank=2 scaffold_20 . CDS 148582 148642 . + 0 ID=Physo132272;Parent=Physo132272;rank=3 scaffold_20 . exon 148582 148642 . + . ID=Physo132272.3;Parent=Physo132272;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 148846 150988 . + 0 ID=Physo132272;Parent=Physo132272;rank=4 scaffold_20 . exon 148846 150988 . + . ID=Physo132272.4;Parent=Physo132272;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . CDS 151009 151564 . + 0 ID=Physo132272;Parent=Physo132272;rank=5 scaffold_20 . biological_region 150179 150180 0.999 + . logic_name=eponine scaffold_20 . biological_region 152980 152981 0.999 + . logic_name=eponine scaffold_20 . repeat_region 153545 153594 . ? . description=dust scaffold_20 . biological_region 154405 154407 0.999 + . logic_name=eponine scaffold_20 . biological_region 154472 154474 0.999 + . logic_name=eponine scaffold_20 . biological_region 154493 154501 0.999 + . logic_name=eponine scaffold_20 . biological_region 154494 154495 0.999 - . logic_name=eponine scaffold_20 . biological_region 154752 154757 0.999 - . logic_name=eponine scaffold_20 . biological_region 155355 155356 0.999 + . logic_name=eponine scaffold_20 . biological_region 155695 155697 0.999 - . logic_name=eponine scaffold_20 . biological_region 156272 156275 0.999 - . logic_name=eponine scaffold_20 . biological_region 157084 157084 0.999 - . logic_name=eponine scaffold_20 . repeat_region 158157 158181 . ? . description=dust scaffold_20 . repeat_region 158603 158630 . ? . description=dust scaffold_20 . exon 151009 151564 . + . ID=Physo132272.5;Parent=Physo132272;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 ensembl protein_coding_gene 151964 152351 . - . ID=Physo132273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200045;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 151964 152351 . - . ID=Physo132273;Parent=Physo132273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 151964 152305 . - 0 ID=Physo132273;Parent=Physo132273;rank=2 scaffold_20 . exon 151964 152305 . - . ID=Physo132273.2;Parent=Physo132273;constitutive=1;rank=2 scaffold_20 . CDS 152337 152351 . - 0 ID=Physo132273;Parent=Physo132273;rank=1 scaffold_20 . exon 152337 152351 . - . ID=Physo132273.1;Parent=Physo132273;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 152970 154850 . + . ID=Physo132274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200046;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 152970 154850 . + . ID=Physo132274;Parent=Physo132274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 152970 153524 . + . ID=Physo132274.1;Parent=Physo132274;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 153045 153524 . + 0 ID=Physo132274;Parent=Physo132274;rank=1 scaffold_20 . CDS 153609 154850 . + 0 ID=Physo132274;Parent=Physo132274;rank=2 scaffold_20 . exon 153609 154850 . + . ID=Physo132274.2;Parent=Physo132274;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 155363 157668 . + . ID=Physo132275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200047;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 155363 157668 . + . ID=Physo132275;Parent=Physo132275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 155363 155828 . + . ID=Physo132275.1;Parent=Physo132275;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_20 . CDS 155584 155828 . + 0 ID=Physo132275;Parent=Physo132275;rank=1 scaffold_20 . CDS 156082 157280 . + 0 ID=Physo132275;Parent=Physo132275;rank=2 scaffold_20 . exon 156082 157280 . + . ID=Physo132275.2;Parent=Physo132275;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 157494 157558 . + 0 ID=Physo132275;Parent=Physo132275;rank=3 scaffold_20 . exon 157494 157558 . + . ID=Physo132275.3;Parent=Physo132275;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 157606 157668 . + 0 ID=Physo132275;Parent=Physo132275;rank=4 scaffold_20 . exon 157606 157668 . + . ID=Physo132275.4;Parent=Physo132275;constitutive=1;rank=4 scaffold_20 ensembl protein_coding_gene 158507 159595 . - . ID=Physo132276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200048;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 158507 159595 . - . ID=Physo132276;Parent=Physo132276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 158507 158905 . - 0 ID=Physo132276;Parent=Physo132276;rank=2 scaffold_20 . exon 158507 158905 . - . ID=Physo132276.3;Parent=Physo132276;constitutive=1;rank=3 scaffold_20 . CDS 158990 159364 . - 0 ID=Physo132276;Parent=Physo132276;rank=1 scaffold_20 . exon 158990 159391 . - . ID=Physo132276.2;Parent=Physo132276;constitutive=1;ensembl_phase=-1;rank=2 scaffold_20 . exon 159476 159595 . - . ID=Physo132276.1;Parent=Physo132276;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_20 . repeat_region 162321 162346 . ? . description=trf scaffold_20 . repeat_region 165117 165145 . ? . description=trf scaffold_20 . repeat_region 169347 169377 . ? . description=trf scaffold_20 ensembl protein_coding_gene 162527 163786 . + . ID=Physo108613;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200001;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 162527 163786 . + . ID=Physo108613;Parent=Physo108613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 162527 163450 . + . ID=Physo108613.1;Parent=Physo108613;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 162566 163450 . + 0 ID=Physo108613;Parent=Physo108613;rank=1 scaffold_20 . CDS 163472 163786 . + 0 ID=Physo108613;Parent=Physo108613;rank=2 scaffold_20 . exon 163472 163786 . + . ID=Physo108613.2;Parent=Physo108613;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 164809 171221 . + . ID=Physo156477;biotype=protein_coding;external_name=C_scaffold_20000003;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 164809 171221 . + . ID=Physo156477;Parent=Physo156477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 164809 164900 . + 0 ID=Physo156477;Parent=Physo156477;rank=1 scaffold_20 . exon 164809 164900 . + . ID=Physo156477.1;Parent=Physo156477;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 164978 165702 . + 0 ID=Physo156477;Parent=Physo156477;rank=2 scaffold_20 . exon 164978 165702 . + . ID=Physo156477.2;Parent=Physo156477;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 165736 165850 . + 0 ID=Physo156477;Parent=Physo156477;rank=3 scaffold_20 . exon 165736 165850 . + . ID=Physo156477.3;Parent=Physo156477;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_20 . CDS 166039 166079 . + 0 ID=Physo156477;Parent=Physo156477;rank=4 scaffold_20 . exon 166039 166079 . + . ID=Physo156477.4;Parent=Physo156477;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 166198 166324 . + 0 ID=Physo156477;Parent=Physo156477;rank=5 scaffold_20 . exon 166198 166324 . + . ID=Physo156477.5;Parent=Physo156477;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_20 . CDS 166544 166659 . + 0 ID=Physo156477;Parent=Physo156477;rank=6 scaffold_20 . exon 166544 166659 . + . ID=Physo156477.6;Parent=Physo156477;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_20 . CDS 166912 166988 . + 0 ID=Physo156477;Parent=Physo156477;rank=7 scaffold_20 . exon 166912 166988 . + . ID=Physo156477.7;Parent=Physo156477;constitutive=1;ensembl_phase=1;rank=7 scaffold_20 . CDS 167109 167225 . + 0 ID=Physo156477;Parent=Physo156477;rank=8 scaffold_20 . exon 167109 167225 . + . ID=Physo156477.8;Parent=Physo156477;constitutive=1;rank=8 scaffold_20 . CDS 167274 167336 . + 0 ID=Physo156477;Parent=Physo156477;rank=9 scaffold_20 . exon 167274 167336 . + . ID=Physo156477.9;Parent=Physo156477;constitutive=1;rank=9 scaffold_20 . CDS 167358 168445 . + 0 ID=Physo156477;Parent=Physo156477;rank=10 scaffold_20 . exon 167358 168445 . + . ID=Physo156477.10;Parent=Physo156477;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_20 . CDS 168572 168747 . + 0 ID=Physo156477;Parent=Physo156477;rank=11 scaffold_20 . exon 168572 168747 . + . ID=Physo156477.11;Parent=Physo156477;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_20 . CDS 169051 169260 . + 0 ID=Physo156477;Parent=Physo156477;rank=12 scaffold_20 . exon 169051 169260 . + . ID=Physo156477.12;Parent=Physo156477;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_20 . CDS 169294 169695 . + 0 ID=Physo156477;Parent=Physo156477;rank=13 scaffold_20 . exon 169294 169695 . + . ID=Physo156477.13;Parent=Physo156477;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_20 . CDS 169747 169983 . + 0 ID=Physo156477;Parent=Physo156477;rank=14 scaffold_20 . CDS 170209 170523 . + 0 ID=Physo156477;Parent=Physo156477;rank=15 scaffold_20 . CDS 170635 171221 . + 0 ID=Physo156477;Parent=Physo156477;rank=16 scaffold_20 . biological_region 174382 174385 0.999 + . logic_name=eponine scaffold_20 . biological_region 174490 174494 0.999 + . logic_name=eponine scaffold_20 . biological_region 174498 174504 0.999 - . logic_name=eponine scaffold_20 . biological_region 174508 174513 0.999 + . logic_name=eponine scaffold_20 . repeat_region 174532 174573 . ? . description=dust scaffold_20 . biological_region 174553 174560 0.999 + . logic_name=eponine scaffold_20 . biological_region 174569 174571 0.999 + . logic_name=eponine scaffold_20 . biological_region 174592 174601 0.999 - . logic_name=eponine scaffold_20 . biological_region 174618 174624 0.999 - . logic_name=eponine scaffold_20 . repeat_region 176333 176340 . ? . description=dust scaffold_20 ensembl protein_coding_gene 172517 173887 . + . ID=Physo108614;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200002;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 172517 173887 . + . ID=Physo108614;Parent=Physo108614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 172517 173887 . + 0 ID=Physo108614;Parent=Physo108614;rank=1 scaffold_20 . exon 172517 173887 . + . ID=Physo108614.1;Parent=Physo108614;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 174061 174894 . - . ID=Physo108615;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200003;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 174061 174894 . - . ID=Physo108615;Parent=Physo108615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 174061 174197 . - 0 ID=Physo108615;Parent=Physo108615;rank=2 scaffold_20 . exon 174061 174197 . - . ID=Physo108615.2;Parent=Physo108615;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 174221 174893 . - 0 ID=Physo108615;Parent=Physo108615;rank=1 scaffold_20 . exon 174221 174894 . - . ID=Physo108615.1;Parent=Physo108615;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_20 ensembl protein_coding_gene 175048 175452 . - . ID=Physo132281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200053;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 175048 175452 . - . ID=Physo132281;Parent=Physo132281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 175048 175452 . - 0 ID=Physo132281;Parent=Physo132281;rank=1 scaffold_20 . exon 175048 175452 . - . ID=Physo132281.1;Parent=Physo132281;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 176939 177334 . - . ID=Physo132282;biotype=protein_coding;description=PsAvh183 [Source:UniProtKB/TrEMBL%3BAcc:E0W4V2];external_name=estExt_fgenesh1_pg.C_200054;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 176939 177334 . - . ID=Physo132282;Parent=Physo132282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 176939 177334 . - 0 ID=Physo132282;Parent=Physo132282;rank=1 scaffold_20 . exon 176939 177334 . - . ID=Physo132282.1;Parent=Physo132282;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 178217 180120 . - . ID=Physo132283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200055;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 178217 180120 . - . ID=Physo132283;Parent=Physo132283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 178217 179136 . - 0 ID=Physo132283;Parent=Physo132283;rank=2 scaffold_20 . exon 178217 179136 . - . ID=Physo132283.2;Parent=Physo132283;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 179454 180120 . - 0 ID=Physo132283;Parent=Physo132283;rank=1 scaffold_20 . exon 179454 180120 . - . ID=Physo132283.1;Parent=Physo132283;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . exon 169747 169983 . + . ID=Physo156477.14;Parent=Physo156477;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_20 . exon 170209 170523 . + . ID=Physo156477.15;Parent=Physo156477;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_20 . exon 170635 171221 . + . ID=Physo156477.16;Parent=Physo156477;constitutive=1;ensembl_phase=1;rank=16 scaffold_20 . repeat_region 180549 182890 . - . description=Gypsy-2-I_PI-int scaffold_20 . repeat_region 194622 194658 . ? . description=trf scaffold_20 ensembl protein_coding_gene 191966 192649 . - . ID=Physo132284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200056;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 191966 192649 . - . ID=Physo132284;Parent=Physo132284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 191966 192352 . - 0 ID=Physo132284;Parent=Physo132284;rank=3 scaffold_20 . exon 191966 192352 . - . ID=Physo132284.3;Parent=Physo132284;constitutive=1;rank=3 scaffold_20 . CDS 192427 192495 . - 0 ID=Physo132284;Parent=Physo132284;rank=2 scaffold_20 . exon 192427 192495 . - . ID=Physo132284.2;Parent=Physo132284;constitutive=1;rank=2 scaffold_20 . CDS 192587 192649 . - 0 ID=Physo132284;Parent=Physo132284;rank=1 scaffold_20 . exon 192587 192649 . - . ID=Physo132284.1;Parent=Physo132284;constitutive=1;rank=1 scaffold_20 . biological_region 204725 204729 0.999 + . logic_name=eponine scaffold_20 . biological_region 206495 206500 0.999 + . logic_name=eponine scaffold_20 . biological_region 206539 206546 0.999 - . logic_name=eponine scaffold_20 . biological_region 206717 206719 0.999 - . logic_name=eponine scaffold_20 . biological_region 206733 206736 0.999 - . logic_name=eponine scaffold_20 . biological_region 206789 206791 0.999 + . logic_name=eponine scaffold_20 . biological_region 206864 206868 0.999 - . logic_name=eponine scaffold_20 . biological_region 206919 206921 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 203498 204945 . + . ID=Physo108616;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200004;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 203498 204945 . + . ID=Physo108616;Parent=Physo108616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 203498 203590 . + . ID=Physo108616.1;Parent=Physo108616;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_20 . CDS 203547 203590 . + 0 ID=Physo108616;Parent=Physo108616;rank=1 scaffold_20 . CDS 203733 204945 . + 0 ID=Physo108616;Parent=Physo108616;rank=2 scaffold_20 . exon 203733 204945 . + . ID=Physo108616.2;Parent=Physo108616;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 ensembl protein_coding_gene 206067 207555 . - . ID=Physo108617;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200005;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 206067 207555 . - . ID=Physo108617;Parent=Physo108617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 206067 207042 . - 0 ID=Physo108617;Parent=Physo108617;rank=2 scaffold_20 . exon 206067 207042 . - . ID=Physo108617.2;Parent=Physo108617;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 207512 207555 . - 0 ID=Physo108617;Parent=Physo108617;rank=1 scaffold_20 . exon 207512 207555 . - . ID=Physo108617.1;Parent=Physo108617;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 208736 209396 . + . ID=Physo132288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200060;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 208736 209396 . + . ID=Physo132288;Parent=Physo132288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 208736 208798 . + 0 ID=Physo132288;Parent=Physo132288;rank=1 scaffold_20 . exon 208736 208798 . + . ID=Physo132288.1;Parent=Physo132288;constitutive=1;rank=1 scaffold_20 . CDS 209073 209396 . + 0 ID=Physo132288;Parent=Physo132288;rank=2 scaffold_20 . exon 209073 209396 . + . ID=Physo132288.2;Parent=Physo132288;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 200941 203079 . - . ID=Physo156479;biotype=protein_coding;external_name=C_scaffold_20000005;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 200941 203079 . - . ID=Physo156479;Parent=Physo156479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 200941 200962 . - 0 ID=Physo156479;Parent=Physo156479;rank=4 scaffold_20 . exon 200941 200962 . - . ID=Physo156479.4;Parent=Physo156479;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 201010 202044 . - 0 ID=Physo156479;Parent=Physo156479;rank=3 scaffold_20 . exon 201010 202044 . - . ID=Physo156479.3;Parent=Physo156479;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_20 . CDS 202224 202767 . - 0 ID=Physo156479;Parent=Physo156479;rank=2 scaffold_20 . exon 202224 202767 . - . ID=Physo156479.2;Parent=Physo156479;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 202998 203079 . - 0 ID=Physo156479;Parent=Physo156479;rank=1 scaffold_20 . exon 202998 203079 . - . ID=Physo156479.1;Parent=Physo156479;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . repeat_region 219058 219097 . ? . description=dust scaffold_20 . repeat_region 219615 219762 . + . description=(CTG)n scaffold_20 ensembl protein_coding_gene 216306 217261 . - . ID=Physo132291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200063;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 216306 217261 . - . ID=Physo132291;Parent=Physo132291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 216306 217261 . - . ID=Physo132291.1;Parent=Physo132291;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_20 . CDS 216419 217261 . - 0 ID=Physo132291;Parent=Physo132291;rank=1 scaffold_20 ensembl protein_coding_gene 218293 221276 . - . ID=Physo132292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200064;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 218293 221276 . - . ID=Physo132292;Parent=Physo132292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 218293 218572 . - 0 ID=Physo132292;Parent=Physo132292;rank=3 scaffold_20 . exon 218293 218572 . - . ID=Physo132292.3;Parent=Physo132292;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 218612 218891 . - 0 ID=Physo132292;Parent=Physo132292;rank=2 scaffold_20 . exon 218612 218891 . - . ID=Physo132292.2;Parent=Physo132292;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 219374 221276 . - 0 ID=Physo132292;Parent=Physo132292;rank=1 scaffold_20 . exon 219374 221276 . - . ID=Physo132292.1;Parent=Physo132292;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 213011 214570 . + . ID=Physo156480;biotype=protein_coding;external_name=C_scaffold_20000006;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 213011 214570 . + . ID=Physo156480;Parent=Physo156480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 213011 213283 . + 0 ID=Physo156480;Parent=Physo156480;rank=1 scaffold_20 . exon 213011 213283 . + . ID=Physo156480.1;Parent=Physo156480;constitutive=1;rank=1 scaffold_20 . CDS 213317 214570 . + 0 ID=Physo156480;Parent=Physo156480;rank=2 scaffold_20 . exon 213317 214570 . + . ID=Physo156480.2;Parent=Physo156480;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 214767 215482 . - . ID=Physo156481;biotype=protein_coding;external_name=C_scaffold_20000007;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 214767 215482 . - . ID=Physo156481;Parent=Physo156481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 214767 214797 . - 0 ID=Physo156481;Parent=Physo156481;rank=2 scaffold_20 . exon 214767 214797 . - . ID=Physo156481.2;Parent=Physo156481;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 214827 215482 . - 0 ID=Physo156481;Parent=Physo156481;rank=1 scaffold_20 . exon 214827 215482 . - . ID=Physo156481.1;Parent=Physo156481;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . repeat_region 219674 219734 . ? . description=trf scaffold_20 . repeat_region 219676 219737 . ? . description=trf scaffold_20 . repeat_region 219688 219737 . ? . description=trf scaffold_20 . repeat_region 219688 219740 . ? . description=trf scaffold_20 . repeat_region 219892 219911 . ? . description=trf scaffold_20 . repeat_region 219923 220004 . ? . description=trf scaffold_20 . repeat_region 219955 220022 . ? . description=trf scaffold_20 . repeat_region 219955 220023 . ? . description=trf scaffold_20 . repeat_region 219961 220022 . ? . description=trf scaffold_20 . biological_region 220610 220612 0.999 + . logic_name=eponine scaffold_20 . repeat_region 221022 221123 . ? . description=trf scaffold_20 . biological_region 221430 221432 0.999 + . logic_name=eponine scaffold_20 . biological_region 221756 221761 0.999 + . logic_name=eponine scaffold_20 . repeat_region 222293 222316 . ? . description=trf scaffold_20 . repeat_region 222622 222650 . ? . description=trf scaffold_20 . biological_region 222754 222758 0.999 - . logic_name=eponine scaffold_20 . biological_region 222823 222831 0.999 - . logic_name=eponine scaffold_20 . biological_region 222881 222885 0.999 + . logic_name=eponine scaffold_20 . biological_region 225681 225682 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 228994 229818 . + . ID=Physo132294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200066;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 228994 229818 . + . ID=Physo132294;Parent=Physo132294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 228994 229118 . + 0 ID=Physo132294;Parent=Physo132294;rank=1 scaffold_20 . exon 228994 229118 . + . ID=Physo132294.1;Parent=Physo132294;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 229181 229256 . + 0 ID=Physo132294;Parent=Physo132294;rank=2 scaffold_20 . exon 229181 229256 . + . ID=Physo132294.2;Parent=Physo132294;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 229342 229464 . + 0 ID=Physo132294;Parent=Physo132294;rank=3 scaffold_20 . exon 229342 229464 . + . ID=Physo132294.3;Parent=Physo132294;constitutive=1;rank=3 scaffold_20 . CDS 229542 229638 . + 0 ID=Physo132294;Parent=Physo132294;rank=4 scaffold_20 . exon 229542 229638 . + . ID=Physo132294.4;Parent=Physo132294;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_20 . CDS 229721 229818 . + 0 ID=Physo132294;Parent=Physo132294;rank=5 scaffold_20 ensembl protein_coding_gene 224445 226070 . + . ID=Physo156482;biotype=protein_coding;external_name=C_scaffold_20000008;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 224445 226070 . + . ID=Physo156482;Parent=Physo156482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 224445 224687 . + 0 ID=Physo156482;Parent=Physo156482;rank=1 scaffold_20 . exon 224445 224687 . + . ID=Physo156482.1;Parent=Physo156482;constitutive=1;rank=1 scaffold_20 . CDS 224752 224947 . + 0 ID=Physo156482;Parent=Physo156482;rank=2 scaffold_20 . exon 224752 224947 . + . ID=Physo156482.2;Parent=Physo156482;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 225742 225859 . + 0 ID=Physo156482;Parent=Physo156482;rank=3 scaffold_20 . exon 225742 225859 . + . ID=Physo156482.3;Parent=Physo156482;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_20 . CDS 225941 226070 . + 0 ID=Physo156482;Parent=Physo156482;rank=4 scaffold_20 . exon 225941 226070 . + . ID=Physo156482.4;Parent=Physo156482;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . repeat_region 232899 232907 . ? . description=dust scaffold_20 . repeat_region 233751 233760 . ? . description=dust scaffold_20 . repeat_region 234706 234713 . ? . description=dust scaffold_20 . exon 229721 229818 . + . ID=Physo132294.5;Parent=Physo132294;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 ensembl protein_coding_gene 229978 231012 . - . ID=Physo132295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200067;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 229978 231012 . - . ID=Physo132295;Parent=Physo132295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 229978 230115 . - 0 ID=Physo132295;Parent=Physo132295;rank=3 scaffold_20 . exon 229978 230115 . - . ID=Physo132295.3;Parent=Physo132295;constitutive=1;rank=3 scaffold_20 . CDS 230147 230570 . - 0 ID=Physo132295;Parent=Physo132295;rank=2 scaffold_20 . exon 230147 230570 . - . ID=Physo132295.2;Parent=Physo132295;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 230660 231012 . - 0 ID=Physo132295;Parent=Physo132295;rank=1 scaffold_20 . exon 230660 231012 . - . ID=Physo132295.1;Parent=Physo132295;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 231216 232877 . - . ID=Physo132296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200068;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 231216 232877 . - . ID=Physo132296;Parent=Physo132296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 231216 232877 . - 0 ID=Physo132296;Parent=Physo132296;rank=1 scaffold_20 . exon 231216 232877 . - . ID=Physo132296.1;Parent=Physo132296;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 234781 235821 . + . ID=Physo132297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200069;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 234781 235821 . + . ID=Physo132297;Parent=Physo132297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 234781 235139 . + 0 ID=Physo132297;Parent=Physo132297;rank=1 scaffold_20 . exon 234781 235139 . + . ID=Physo132297.1;Parent=Physo132297;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 235229 235652 . + 0 ID=Physo132297;Parent=Physo132297;rank=2 scaffold_20 . exon 235229 235652 . + . ID=Physo132297.2;Parent=Physo132297;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 235684 235821 . + 0 ID=Physo132297;Parent=Physo132297;rank=3 scaffold_20 . exon 235684 235821 . + . ID=Physo132297.3;Parent=Physo132297;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 235981 236805 . - . ID=Physo132298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200070;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 235981 236805 . - . ID=Physo132298;Parent=Physo132298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 235981 236078 . - 0 ID=Physo132298;Parent=Physo132298;rank=5 scaffold_20 . exon 235981 236078 . - . ID=Physo132298.5;Parent=Physo132298;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 236161 236257 . - 0 ID=Physo132298;Parent=Physo132298;rank=4 scaffold_20 . exon 236161 236257 . - . ID=Physo132298.4;Parent=Physo132298;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_20 . CDS 236335 236457 . - 0 ID=Physo132298;Parent=Physo132298;rank=3 scaffold_20 . exon 236335 236457 . - . ID=Physo132298.3;Parent=Physo132298;constitutive=1;rank=3 scaffold_20 . CDS 236543 236618 . - 0 ID=Physo132298;Parent=Physo132298;rank=2 scaffold_20 . exon 236543 236618 . - . ID=Physo132298.2;Parent=Physo132298;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 236681 236805 . - 0 ID=Physo132298;Parent=Physo132298;rank=1 scaffold_20 . exon 236681 236805 . - . ID=Physo132298.1;Parent=Physo132298;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 237816 239425 . - . ID=Physo132299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200071;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 237816 239425 . - . ID=Physo132299;Parent=Physo132299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 237816 238054 . - 0 ID=Physo132299;Parent=Physo132299;rank=6 scaffold_20 . exon 237816 238054 . - . ID=Physo132299.6;Parent=Physo132299;constitutive=1;ensembl_phase=1;rank=6 scaffold_20 . CDS 238124 238416 . - 0 ID=Physo132299;Parent=Physo132299;rank=5 scaffold_20 . exon 238124 238416 . - . ID=Physo132299.5;Parent=Physo132299;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 238615 238746 . - 0 ID=Physo132299;Parent=Physo132299;rank=4 scaffold_20 . exon 238615 238746 . - . ID=Physo132299.4;Parent=Physo132299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_20 . CDS 238877 238999 . - 0 ID=Physo132299;Parent=Physo132299;rank=3 scaffold_20 . exon 238877 238999 . - . ID=Physo132299.3;Parent=Physo132299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_20 . CDS 239073 239240 . - 0 ID=Physo132299;Parent=Physo132299;rank=2 scaffold_20 . exon 239073 239240 . - . ID=Physo132299.2;Parent=Physo132299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_20 . CDS 239286 239425 . - 0 ID=Physo132299;Parent=Physo132299;rank=1 scaffold_20 . exon 239286 239425 . - . ID=Physo132299.1;Parent=Physo132299;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . biological_region 243545 243549 0.999 + . logic_name=eponine scaffold_20 . repeat_region 245475 245541 . ? . description=trf scaffold_20 . repeat_region 245498 245538 . ? . description=trf scaffold_20 . biological_region 246043 246047 0.999 + . logic_name=eponine scaffold_20 . biological_region 246066 246069 0.999 + . logic_name=eponine scaffold_20 . biological_region 246211 246215 0.999 + . logic_name=eponine scaffold_20 . biological_region 246393 246396 0.999 - . logic_name=eponine scaffold_20 . biological_region 246587 246592 0.999 + . logic_name=eponine scaffold_20 . biological_region 246640 246642 0.999 - . logic_name=eponine scaffold_20 . biological_region 246655 246656 0.999 + . logic_name=eponine scaffold_20 . biological_region 246670 246675 0.999 + . logic_name=eponine scaffold_20 . biological_region 249428 249430 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 243467 244405 . + . ID=Physo108618;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200006;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 243467 244405 . + . ID=Physo108618;Parent=Physo108618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 243467 244405 . + 0 ID=Physo108618;Parent=Physo108618;rank=1 scaffold_20 . exon 243467 244405 . + . ID=Physo108618.1;Parent=Physo108618;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 244763 246130 . - . ID=Physo132301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200073;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 244763 246130 . - . ID=Physo132301;Parent=Physo132301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 244763 245098 . - 0 ID=Physo132301;Parent=Physo132301;rank=2 scaffold_20 . exon 244763 245098 . - . ID=Physo132301.2;Parent=Physo132301;constitutive=1;rank=2 scaffold_20 . CDS 245180 246130 . - 0 ID=Physo132301;Parent=Physo132301;rank=1 scaffold_20 . exon 245180 246130 . - . ID=Physo132301.1;Parent=Physo132301;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 246543 248212 . + . ID=Physo132302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200074;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 246543 248212 . + . ID=Physo132302;Parent=Physo132302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 246543 248073 . + 0 ID=Physo132302;Parent=Physo132302;rank=1 scaffold_20 . exon 246543 248073 . + . ID=Physo132302.1;Parent=Physo132302;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 248163 248212 . + 0 ID=Physo132302;Parent=Physo132302;rank=2 scaffold_20 . exon 248163 248212 . + . ID=Physo132302.2;Parent=Physo132302;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . repeat_region 257194 257246 . + . description=(CGAGT)n scaffold_20 ensembl protein_coding_gene 250802 253442 . + . ID=Physo132303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200075;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 250802 253442 . + . ID=Physo132303;Parent=Physo132303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 250802 251121 . + . ID=Physo132303.1;Parent=Physo132303;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 250969 251121 . + 0 ID=Physo132303;Parent=Physo132303;rank=1 scaffold_20 . CDS 251385 253442 . + 0 ID=Physo132303;Parent=Physo132303;rank=2 scaffold_20 . exon 251385 253442 . + . ID=Physo132303.2;Parent=Physo132303;constitutive=1;rank=2 scaffold_20 . repeat_region 260079 260110 . ? . description=trf scaffold_20 . biological_region 264068 264071 0.999 - . logic_name=eponine scaffold_20 . biological_region 264169 264171 0.999 - . logic_name=eponine scaffold_20 . repeat_region 267194 267214 . ? . description=trf scaffold_20 . biological_region 268847 268848 0.999 - . logic_name=eponine scaffold_20 . repeat_region 269013 269026 . ? . description=dust scaffold_20 . biological_region 269015 269017 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 260440 264074 . - . ID=Physo132304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200076;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 260440 264074 . - . ID=Physo132304;Parent=Physo132304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 260440 260947 . - 0 ID=Physo132304;Parent=Physo132304;rank=9 scaffold_20 . exon 260440 260947 . - . ID=Physo132304.9;Parent=Physo132304;constitutive=1;ensembl_phase=2;rank=9 scaffold_20 . CDS 260971 261026 . - 0 ID=Physo132304;Parent=Physo132304;rank=8 scaffold_20 . exon 260971 261026 . - . ID=Physo132304.8;Parent=Physo132304;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_20 . CDS 261052 261402 . - 0 ID=Physo132304;Parent=Physo132304;rank=7 scaffold_20 . exon 261052 261402 . - . ID=Physo132304.7;Parent=Physo132304;constitutive=1;rank=7 scaffold_20 . CDS 261491 261677 . - 0 ID=Physo132304;Parent=Physo132304;rank=6 scaffold_20 . exon 261491 261677 . - . ID=Physo132304.6;Parent=Physo132304;constitutive=1;ensembl_phase=2;rank=6 scaffold_20 . CDS 261998 262288 . - 0 ID=Physo132304;Parent=Physo132304;rank=5 scaffold_20 . exon 261998 262288 . - . ID=Physo132304.5;Parent=Physo132304;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_20 . CDS 262335 262777 . - 0 ID=Physo132304;Parent=Physo132304;rank=4 scaffold_20 . exon 262335 262777 . - . ID=Physo132304.4;Parent=Physo132304;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_20 . CDS 262814 263105 . - 0 ID=Physo132304;Parent=Physo132304;rank=3 scaffold_20 . exon 262814 263105 . - . ID=Physo132304.3;Parent=Physo132304;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 263148 263851 . - 0 ID=Physo132304;Parent=Physo132304;rank=2 scaffold_20 . exon 263148 263851 . - . ID=Physo132304.2;Parent=Physo132304;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_20 . CDS 263898 264074 . - 0 ID=Physo132304;Parent=Physo132304;rank=1 scaffold_20 . exon 263898 264074 . - . ID=Physo132304.1;Parent=Physo132304;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 269538 271550 . + . ID=Physo132305;biotype=protein_coding;description=PsAvh146 [Source:UniProtKB/TrEMBL%3BAcc:E0W4V5];external_name=estExt_fgenesh1_pg.C_200077;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 269538 271550 . + . ID=Physo132305;Parent=Physo132305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 269538 271550 . + 0 ID=Physo132305;Parent=Physo132305;rank=1 scaffold_20 . exon 269538 271550 . + . ID=Physo132305.1;Parent=Physo132305;constitutive=1;rank=1 scaffold_20 . repeat_region 273956 274026 . + . description=(CGA)n scaffold_20 . repeat_region 278014 278181 . - . description=Polinton-1_PI scaffold_20 . repeat_region 278184 283534 . - . description=Polinton-1_PI scaffold_20 ensembl protein_coding_gene 273083 274207 . + . ID=Physo132306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200078;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 273083 274207 . + . ID=Physo132306;Parent=Physo132306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 273083 273264 . + 0 ID=Physo132306;Parent=Physo132306;rank=1 scaffold_20 . exon 273083 273264 . + . ID=Physo132306.1;Parent=Physo132306;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 273287 273368 . + 0 ID=Physo132306;Parent=Physo132306;rank=2 scaffold_20 . exon 273287 273368 . + . ID=Physo132306.2;Parent=Physo132306;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 273443 274207 . + 0 ID=Physo132306;Parent=Physo132306;rank=3 scaffold_20 . exon 273443 274207 . + . ID=Physo132306.3;Parent=Physo132306;constitutive=1;rank=3 scaffold_20 . repeat_region 283270 283277 . ? . description=dust scaffold_20 . repeat_region 286981 287010 . ? . description=trf scaffold_20 . repeat_region 287462 287499 . ? . description=dust scaffold_20 . repeat_region 287462 287499 . ? . description=trf scaffold_20 . repeat_region 287462 287499 . ? . description=trf scaffold_20 ensembl protein_coding_gene 281322 282923 . - . ID=Physo132307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200079;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 281322 282923 . - . ID=Physo132307;Parent=Physo132307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 281322 282923 . - 0 ID=Physo132307;Parent=Physo132307;rank=1 scaffold_20 . exon 281322 282923 . - . ID=Physo132307.1;Parent=Physo132307;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 283487 285029 . - . ID=Physo132308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200080;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 283487 285029 . - . ID=Physo132308;Parent=Physo132308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 283487 283808 . - . ID=Physo132308.3;Parent=Physo132308;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_20 . CDS 283593 283808 . - 0 ID=Physo132308;Parent=Physo132308;rank=3 scaffold_20 . CDS 283865 284355 . - 0 ID=Physo132308;Parent=Physo132308;rank=2 scaffold_20 . exon 283865 284355 . - . ID=Physo132308.2;Parent=Physo132308;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 284428 285013 . - 0 ID=Physo132308;Parent=Physo132308;rank=1 scaffold_20 . exon 284428 285029 . - . ID=Physo132308.1;Parent=Physo132308;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_20 . biological_region 292940 292943 0.999 + . logic_name=eponine scaffold_20 . biological_region 293800 293802 0.999 - . logic_name=eponine scaffold_20 . biological_region 294635 294644 0.999 + . logic_name=eponine scaffold_20 . biological_region 294702 294702 0.999 - . logic_name=eponine scaffold_20 . biological_region 294735 294735 0.999 - . logic_name=eponine scaffold_20 . biological_region 294770 294772 0.999 - . logic_name=eponine scaffold_20 . biological_region 294788 294790 0.999 + . logic_name=eponine scaffold_20 . biological_region 294803 294808 0.999 - . logic_name=eponine scaffold_20 . biological_region 295447 295453 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 296550 297278 . - . ID=Physo108619;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200007;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 296550 297278 . - . ID=Physo108619;Parent=Physo108619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 296550 297278 . - 0 ID=Physo108619;Parent=Physo108619;rank=1 scaffold_20 . exon 296550 297278 . - . ID=Physo108619.1;Parent=Physo108619;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 289707 290598 . + . ID=Physo132309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200081;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 289707 290598 . + . ID=Physo132309;Parent=Physo132309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 289707 289983 . + 0 ID=Physo132309;Parent=Physo132309;rank=1 scaffold_20 . exon 289707 289983 . + . ID=Physo132309.1;Parent=Physo132309;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 290087 290279 . + 0 ID=Physo132309;Parent=Physo132309;rank=2 scaffold_20 . exon 290087 290279 . + . ID=Physo132309.2;Parent=Physo132309;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 290355 290598 . + 0 ID=Physo132309;Parent=Physo132309;rank=3 scaffold_20 . exon 290355 290598 . + . ID=Physo132309.3;Parent=Physo132309;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 ensembl protein_coding_gene 292357 296360 . + . ID=Physo132310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200082;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 292357 296360 . + . ID=Physo132310;Parent=Physo132310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 292357 293098 . + 0 ID=Physo132310;Parent=Physo132310;rank=1 scaffold_20 . exon 292357 293098 . + . ID=Physo132310.1;Parent=Physo132310;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 293136 294058 . + 0 ID=Physo132310;Parent=Physo132310;rank=2 scaffold_20 . exon 293136 294058 . + . ID=Physo132310.2;Parent=Physo132310;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 294454 294587 . + 0 ID=Physo132310;Parent=Physo132310;rank=3 scaffold_20 . exon 294454 294587 . + . ID=Physo132310.3;Parent=Physo132310;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 294650 296360 . + 0 ID=Physo132310;Parent=Physo132310;rank=4 scaffold_20 . exon 294650 296360 . + . ID=Physo132310.4;Parent=Physo132310;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 ensembl protein_coding_gene 298537 302608 . - . ID=Physo132312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200084;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 298537 302608 . - . ID=Physo132312;Parent=Physo132312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 298537 299037 . - 0 ID=Physo132312;Parent=Physo132312;rank=9 scaffold_20 . exon 298537 299037 . - . ID=Physo132312.9;Parent=Physo132312;constitutive=1;rank=9 scaffold_20 . CDS 299119 299587 . - 0 ID=Physo132312;Parent=Physo132312;rank=8 scaffold_20 . exon 299119 299587 . - . ID=Physo132312.8;Parent=Physo132312;constitutive=1;ensembl_phase=2;rank=8 scaffold_20 . CDS 299681 300041 . - 0 ID=Physo132312;Parent=Physo132312;rank=7 scaffold_20 . CDS 300329 300537 . - 0 ID=Physo132312;Parent=Physo132312;rank=6 scaffold_20 . CDS 300694 300852 . - 0 ID=Physo132312;Parent=Physo132312;rank=5 scaffold_20 . CDS 301120 301381 . - 0 ID=Physo132312;Parent=Physo132312;rank=4 scaffold_20 . CDS 301421 301587 . - 0 ID=Physo132312;Parent=Physo132312;rank=3 scaffold_20 . CDS 301711 302407 . - 0 ID=Physo132312;Parent=Physo132312;rank=2 scaffold_20 . CDS 302443 302608 . - 0 ID=Physo132312;Parent=Physo132312;rank=1 scaffold_20 . repeat_region 308660 308667 . ? . description=dust scaffold_20 ensembl protein_coding_gene 305619 306723 . + . ID=Physo108620;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200008;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 305619 306723 . + . ID=Physo108620;Parent=Physo108620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 305619 306595 . + 0 ID=Physo108620;Parent=Physo108620;rank=1 scaffold_20 . exon 305619 306595 . + . ID=Physo108620.1;Parent=Physo108620;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 306615 306723 . + 0 ID=Physo108620;Parent=Physo108620;rank=2 scaffold_20 . exon 306615 306723 . + . ID=Physo108620.2;Parent=Physo108620;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . exon 299681 300041 . - . ID=Physo132312.7;Parent=Physo132312;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_20 . exon 300329 300537 . - . ID=Physo132312.6;Parent=Physo132312;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_20 . exon 300694 300852 . - . ID=Physo132312.5;Parent=Physo132312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_20 . exon 301120 301381 . - . ID=Physo132312.4;Parent=Physo132312;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . exon 301421 301587 . - . ID=Physo132312.3;Parent=Physo132312;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_20 . exon 301711 302407 . - . ID=Physo132312.2;Parent=Physo132312;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . exon 302443 302608 . - . ID=Physo132312.1;Parent=Physo132312;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . repeat_region 311680 311715 . ? . description=trf scaffold_20 . biological_region 312777 312779 0.999 - . logic_name=eponine scaffold_20 . repeat_region 312882 312914 . ? . description=trf scaffold_20 . biological_region 314785 314786 0.999 + . logic_name=eponine scaffold_20 . biological_region 315138 315139 0.999 - . logic_name=eponine scaffold_20 . biological_region 317002 317004 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 316637 317389 . + . ID=Physo108621;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200009;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 316637 317389 . + . ID=Physo108621;Parent=Physo108621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 316637 317389 . + 0 ID=Physo108621;Parent=Physo108621;rank=1 scaffold_20 . exon 316637 317389 . + . ID=Physo108621.1;Parent=Physo108621;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 312211 313884 . - . ID=Physo132314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200086;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 312211 313884 . - . ID=Physo132314;Parent=Physo132314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 312211 313224 . - 0 ID=Physo132314;Parent=Physo132314;rank=3 scaffold_20 . exon 312211 313224 . - . ID=Physo132314.3;Parent=Physo132314;constitutive=1;rank=3 scaffold_20 . CDS 313292 313610 . - 0 ID=Physo132314;Parent=Physo132314;rank=2 scaffold_20 . exon 313292 313610 . - . ID=Physo132314.2;Parent=Physo132314;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 313865 313884 . - 0 ID=Physo132314;Parent=Physo132314;rank=1 scaffold_20 . exon 313865 313884 . - . ID=Physo132314.1;Parent=Physo132314;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 314667 315744 . + . ID=Physo132315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200087;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 314667 315744 . + . ID=Physo132315;Parent=Physo132315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 314667 315744 . + . ID=Physo132315.1;Parent=Physo132315;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 314689 315744 . + 0 ID=Physo132315;Parent=Physo132315;rank=1 scaffold_20 . repeat_region 328269 328287 . ? . description=dust scaffold_20 ensembl protein_coding_gene 320916 322562 . - . ID=Physo132317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200089;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 320916 322562 . - . ID=Physo132317;Parent=Physo132317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 320916 322562 . - 0 ID=Physo132317;Parent=Physo132317;rank=1 scaffold_20 . exon 320916 322562 . - . ID=Physo132317.1;Parent=Physo132317;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 323380 324510 . + . ID=Physo132318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200090;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 323380 324510 . + . ID=Physo132318;Parent=Physo132318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 323380 324510 . + 0 ID=Physo132318;Parent=Physo132318;rank=1 scaffold_20 . exon 323380 324510 . + . ID=Physo132318.1;Parent=Physo132318;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 324847 326659 . - . ID=Physo156484;biotype=protein_coding;external_name=C_scaffold_20000010;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 324847 326659 . - . ID=Physo156484;Parent=Physo156484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 324847 324879 . - 0 ID=Physo156484;Parent=Physo156484;rank=5 scaffold_20 . exon 324847 324879 . - . ID=Physo156484.5;Parent=Physo156484;constitutive=1;rank=5 scaffold_20 . CDS 324986 325123 . - 0 ID=Physo156484;Parent=Physo156484;rank=4 scaffold_20 . exon 324986 325123 . - . ID=Physo156484.4;Parent=Physo156484;constitutive=1;rank=4 scaffold_20 . CDS 325199 326072 . - 0 ID=Physo156484;Parent=Physo156484;rank=3 scaffold_20 . exon 325199 326072 . - . ID=Physo156484.3;Parent=Physo156484;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 326109 326490 . - 0 ID=Physo156484;Parent=Physo156484;rank=2 scaffold_20 . exon 326109 326490 . - . ID=Physo156484.2;Parent=Physo156484;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 326545 326659 . - 0 ID=Physo156484;Parent=Physo156484;rank=1 scaffold_20 . exon 326545 326659 . - . ID=Physo156484.1;Parent=Physo156484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 327879 328193 . + . ID=Physo156485;biotype=protein_coding;external_name=C_scaffold_20000011;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 327879 328193 . + . ID=Physo156485;Parent=Physo156485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 327879 328193 . + 0 ID=Physo156485;Parent=Physo156485;rank=1 scaffold_20 . exon 327879 328193 . + . ID=Physo156485.1;Parent=Physo156485;constitutive=1;rank=1 scaffold_20 . biological_region 330654 330656 0.999 - . logic_name=eponine scaffold_20 . biological_region 337885 337889 0.999 - . logic_name=eponine scaffold_20 . repeat_region 338255 338425 . + . description=Polinton-1_PI scaffold_20 ensembl protein_coding_gene 330422 330928 . + . ID=Physo132321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200093;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 330422 330928 . + . ID=Physo132321;Parent=Physo132321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 330422 330928 . + 0 ID=Physo132321;Parent=Physo132321;rank=1 scaffold_20 . exon 330422 330928 . + . ID=Physo132321.1;Parent=Physo132321;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 331201 332006 . + . ID=Physo132322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200094;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 331201 332006 . + . ID=Physo132322;Parent=Physo132322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 331201 331335 . + 0 ID=Physo132322;Parent=Physo132322;rank=1 scaffold_20 . exon 331201 331335 . + . ID=Physo132322.1;Parent=Physo132322;constitutive=1;rank=1 scaffold_20 . CDS 331407 332006 . + 0 ID=Physo132322;Parent=Physo132322;rank=2 scaffold_20 . exon 331407 332006 . + . ID=Physo132322.2;Parent=Physo132322;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 332422 333385 . + . ID=Physo132323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200095;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 332422 333385 . + . ID=Physo132323;Parent=Physo132323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 332422 332561 . + 0 ID=Physo132323;Parent=Physo132323;rank=1 scaffold_20 . exon 332422 332561 . + . ID=Physo132323.1;Parent=Physo132323;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 332633 332714 . + 0 ID=Physo132323;Parent=Physo132323;rank=2 scaffold_20 . exon 332633 332714 . + . ID=Physo132323.2;Parent=Physo132323;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 332903 333385 . + 0 ID=Physo132323;Parent=Physo132323;rank=3 scaffold_20 . exon 332903 333385 . + . ID=Physo132323.3;Parent=Physo132323;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 335512 337273 . + . ID=Physo132324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200096;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 335512 337273 . + . ID=Physo132324;Parent=Physo132324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 335512 335839 . + 0 ID=Physo132324;Parent=Physo132324;rank=1 scaffold_20 . exon 335512 335839 . + . ID=Physo132324.1;Parent=Physo132324;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 336096 337273 . + 0 ID=Physo132324;Parent=Physo132324;rank=2 scaffold_20 . exon 336096 337273 . + . ID=Physo132324.2;Parent=Physo132324;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . repeat_region 341080 341124 . ? . description=dust scaffold_20 . repeat_region 345846 345853 . ? . description=dust scaffold_20 . repeat_region 349295 349302 . ? . description=dust scaffold_20 ensembl protein_coding_gene 343381 344348 . + . ID=Physo132325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200097;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 343381 344348 . + . ID=Physo132325;Parent=Physo132325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 343381 343520 . + 0 ID=Physo132325;Parent=Physo132325;rank=1 scaffold_20 . exon 343381 343520 . + . ID=Physo132325.1;Parent=Physo132325;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 343592 343673 . + 0 ID=Physo132325;Parent=Physo132325;rank=2 scaffold_20 . exon 343592 343673 . + . ID=Physo132325.2;Parent=Physo132325;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 343731 344348 . + 0 ID=Physo132325;Parent=Physo132325;rank=3 scaffold_20 . exon 343731 344348 . + . ID=Physo132325.3;Parent=Physo132325;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 346871 348881 . + . ID=Physo132326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200098;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 346871 348881 . + . ID=Physo132326;Parent=Physo132326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 346871 346933 . + 0 ID=Physo132326;Parent=Physo132326;rank=1 scaffold_20 . exon 346871 346933 . + . ID=Physo132326.1;Parent=Physo132326;constitutive=1;rank=1 scaffold_20 . CDS 347009 347371 . + 0 ID=Physo132326;Parent=Physo132326;rank=2 scaffold_20 . exon 347009 347371 . + . ID=Physo132326.2;Parent=Physo132326;constitutive=1;rank=2 scaffold_20 . CDS 347395 347694 . + 0 ID=Physo132326;Parent=Physo132326;rank=3 scaffold_20 . exon 347395 347694 . + . ID=Physo132326.3;Parent=Physo132326;constitutive=1;rank=3 scaffold_20 . CDS 347922 348064 . + 0 ID=Physo132326;Parent=Physo132326;rank=4 scaffold_20 . exon 347922 348064 . + . ID=Physo132326.4;Parent=Physo132326;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_20 . CDS 348123 348204 . + 0 ID=Physo132326;Parent=Physo132326;rank=5 scaffold_20 . exon 348123 348204 . + . ID=Physo132326.5;Parent=Physo132326;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 348267 348881 . + 0 ID=Physo132326;Parent=Physo132326;rank=6 scaffold_20 . exon 348267 348881 . + . ID=Physo132326.6;Parent=Physo132326;constitutive=1;rank=6 scaffold_20 . biological_region 350206 350208 0.999 + . logic_name=eponine scaffold_20 . biological_region 354719 354723 0.999 + . logic_name=eponine scaffold_20 . repeat_region 355562 355589 . ? . description=trf scaffold_20 . repeat_region 355562 355589 . + . description=(CGAGT)n scaffold_20 . biological_region 355921 355924 0.999 + . logic_name=eponine scaffold_20 . biological_region 355959 355963 0.999 + . logic_name=eponine scaffold_20 . biological_region 356005 356008 0.999 - . logic_name=eponine scaffold_20 . biological_region 356203 356205 0.999 - . logic_name=eponine scaffold_20 . biological_region 356207 356209 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 351510 355426 . + . ID=Physo132327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200099;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 351510 355426 . + . ID=Physo132327;Parent=Physo132327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 351510 351640 . + 0 ID=Physo132327;Parent=Physo132327;rank=1 scaffold_20 . exon 351510 351640 . + . ID=Physo132327.1;Parent=Physo132327;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 351713 351794 . + 0 ID=Physo132327;Parent=Physo132327;rank=2 scaffold_20 . exon 351713 351794 . + . ID=Physo132327.2;Parent=Physo132327;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 351862 352249 . + 0 ID=Physo132327;Parent=Physo132327;rank=3 scaffold_20 . exon 351862 352249 . + . ID=Physo132327.3;Parent=Physo132327;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 352813 352936 . + 0 ID=Physo132327;Parent=Physo132327;rank=4 scaffold_20 . exon 352813 352936 . + . ID=Physo132327.4;Parent=Physo132327;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_20 . CDS 352998 353079 . + 0 ID=Physo132327;Parent=Physo132327;rank=5 scaffold_20 . exon 352998 353079 . + . ID=Physo132327.5;Parent=Physo132327;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 353178 353568 . + 0 ID=Physo132327;Parent=Physo132327;rank=6 scaffold_20 . exon 353178 353568 . + . ID=Physo132327.6;Parent=Physo132327;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_20 . CDS 353916 355426 . + 0 ID=Physo132327;Parent=Physo132327;rank=7 scaffold_20 . exon 353916 355426 . + . ID=Physo132327.7;Parent=Physo132327;constitutive=1;ensembl_phase=1;rank=7 scaffold_20 ensembl protein_coding_gene 356580 357530 . + . ID=Physo132329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200101;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 356580 357530 . + . ID=Physo132329;Parent=Physo132329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 356580 357530 . + 0 ID=Physo132329;Parent=Physo132329;rank=1 scaffold_20 . exon 356580 357530 . + . ID=Physo132329.1;Parent=Physo132329;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 355680 356212 . - . ID=Physo156487;biotype=protein_coding;external_name=C_scaffold_20000013;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 355680 356212 . - . ID=Physo156487;Parent=Physo156487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 355680 356052 . - 0 ID=Physo156487;Parent=Physo156487;rank=2 scaffold_20 . exon 355680 356052 . - . ID=Physo156487.2;Parent=Physo156487;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 356199 356212 . - 0 ID=Physo156487;Parent=Physo156487;rank=1 scaffold_20 . exon 356199 356212 . - . ID=Physo156487.1;Parent=Physo156487;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 357742 361947 . - . ID=Physo156491;biotype=protein_coding;external_name=C_scaffold_20000017;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 357742 361947 . - . ID=Physo156491;Parent=Physo156491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 357742 358021 . - 0 ID=Physo156491;Parent=Physo156491;rank=7 scaffold_20 . exon 357742 358021 . - . ID=Physo156491.7;Parent=Physo156491;constitutive=1;ensembl_phase=2;rank=7 scaffold_20 . CDS 358299 358475 . - 0 ID=Physo156491;Parent=Physo156491;rank=6 scaffold_20 . exon 358299 358475 . - . ID=Physo156491.6;Parent=Physo156491;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_20 . CDS 358554 359330 . - 0 ID=Physo156491;Parent=Physo156491;rank=5 scaffold_20 . exon 358554 359330 . - . ID=Physo156491.5;Parent=Physo156491;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_20 . CDS 359405 359562 . - 0 ID=Physo156491;Parent=Physo156491;rank=4 scaffold_20 . exon 359405 359562 . - . ID=Physo156491.4;Parent=Physo156491;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_20 . CDS 359630 360066 . - 0 ID=Physo156491;Parent=Physo156491;rank=3 scaffold_20 . CDS 360157 360712 . - 0 ID=Physo156491;Parent=Physo156491;rank=2 scaffold_20 . CDS 361480 361947 . - 0 ID=Physo156491;Parent=Physo156491;rank=1 scaffold_20 ensembl protein_coding_gene 366204 367425 . - . ID=Physo132332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200104;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 366204 367425 . - . ID=Physo132332;Parent=Physo132332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 366204 366331 . - 0 ID=Physo132332;Parent=Physo132332;rank=6 scaffold_20 . exon 366204 366331 . - . ID=Physo132332.6;Parent=Physo132332;constitutive=1;ensembl_phase=1;rank=6 scaffold_20 . CDS 366361 366428 . - 0 ID=Physo132332;Parent=Physo132332;rank=5 scaffold_20 . exon 366361 366428 . - . ID=Physo132332.5;Parent=Physo132332;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 366509 366639 . - 0 ID=Physo132332;Parent=Physo132332;rank=4 scaffold_20 . exon 366509 366639 . - . ID=Physo132332.4;Parent=Physo132332;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_20 . CDS 366685 366747 . - 0 ID=Physo132332;Parent=Physo132332;rank=3 scaffold_20 . exon 366685 366747 . - . ID=Physo132332.3;Parent=Physo132332;constitutive=1;rank=3 scaffold_20 . CDS 366769 367008 . - 0 ID=Physo132332;Parent=Physo132332;rank=2 scaffold_20 . exon 366769 367008 . - . ID=Physo132332.2;Parent=Physo132332;constitutive=1;rank=2 scaffold_20 . CDS 367081 367425 . - 0 ID=Physo132332;Parent=Physo132332;rank=1 scaffold_20 . exon 367081 367425 . - . ID=Physo132332.1;Parent=Physo132332;constitutive=1;rank=1 scaffold_20 . exon 359630 360066 . - . ID=Physo156491.3;Parent=Physo156491;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . exon 360157 360712 . - . ID=Physo156491.2;Parent=Physo156491;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . exon 361480 361947 . - . ID=Physo156491.1;Parent=Physo156491;constitutive=1;rank=1 scaffold_20 . repeat_region 370966 370992 . ? . description=trf scaffold_20 . biological_region 376533 376534 0.999 + . logic_name=eponine scaffold_20 . repeat_region 378742 378900 . ? . description=trf scaffold_20 . repeat_region 378760 379297 . ? . description=trf scaffold_20 . repeat_region 378845 378918 . ? . description=trf scaffold_20 . repeat_region 378896 379050 . ? . description=trf scaffold_20 . repeat_region 378995 379068 . ? . description=trf scaffold_20 . repeat_region 379046 379200 . ? . description=trf scaffold_20 . repeat_region 379145 379218 . ? . description=trf scaffold_20 ensembl protein_coding_gene 372256 373382 . + . ID=Physo132333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200105;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 372256 373382 . + . ID=Physo132333;Parent=Physo132333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 372256 372423 . + 0 ID=Physo132333;Parent=Physo132333;rank=1 scaffold_20 . exon 372256 372423 . + . ID=Physo132333.1;Parent=Physo132333;constitutive=1;rank=1 scaffold_20 . CDS 372486 373382 . + 0 ID=Physo132333;Parent=Physo132333;rank=2 scaffold_20 . exon 372486 373382 . + . ID=Physo132333.2;Parent=Physo132333;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 373507 377541 . - . ID=Physo132334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200106;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 373507 377541 . - . ID=Physo132334;Parent=Physo132334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 373507 377541 . - 0 ID=Physo132334;Parent=Physo132334;rank=1 scaffold_20 . exon 373507 377541 . - . ID=Physo132334.1;Parent=Physo132334;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 378561 379467 . - . ID=Physo132335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200107;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 378561 379467 . - . ID=Physo132335;Parent=Physo132335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 378561 379323 . - 0 ID=Physo132335;Parent=Physo132335;rank=2 scaffold_20 . exon 378561 379323 . - . ID=Physo132335.2;Parent=Physo132335;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 379421 379467 . - 0 ID=Physo132335;Parent=Physo132335;rank=1 scaffold_20 . repeat_region 382720 384891 . ? . description=dust scaffold_20 . repeat_region 384892 386377 . ? . description=dust scaffold_20 . exon 379421 379467 . - . ID=Physo132335.1;Parent=Physo132335;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 386997 387974 . + . ID=Physo132336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200108;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 386997 387974 . + . ID=Physo132336;Parent=Physo132336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 386997 387974 . + 0 ID=Physo132336;Parent=Physo132336;rank=1 scaffold_20 . exon 386997 387974 . + . ID=Physo132336.1;Parent=Physo132336;constitutive=1;rank=1 scaffold_20 . repeat_region 393056 393080 . ? . description=trf scaffold_20 . biological_region 396989 396990 0.999 - . logic_name=eponine scaffold_20 . biological_region 397010 397013 0.999 - . logic_name=eponine scaffold_20 . biological_region 398274 398276 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 394347 395347 . + . ID=Physo132337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200109;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 394347 395347 . + . ID=Physo132337;Parent=Physo132337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 394347 394932 . + 0 ID=Physo132337;Parent=Physo132337;rank=1 scaffold_20 . exon 394347 394932 . + . ID=Physo132337.1;Parent=Physo132337;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 395053 395165 . + 0 ID=Physo132337;Parent=Physo132337;rank=2 scaffold_20 . exon 395053 395165 . + . ID=Physo132337.2;Parent=Physo132337;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 395222 395347 . + 0 ID=Physo132337;Parent=Physo132337;rank=3 scaffold_20 . exon 395222 395347 . + . ID=Physo132337.3;Parent=Physo132337;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 396848 398667 . + . ID=Physo132338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200110;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 396848 398667 . + . ID=Physo132338;Parent=Physo132338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 396848 397948 . + 0 ID=Physo132338;Parent=Physo132338;rank=1 scaffold_20 . exon 396848 397948 . + . ID=Physo132338.1;Parent=Physo132338;constitutive=1;rank=1 scaffold_20 . CDS 398029 398667 . + 0 ID=Physo132338;Parent=Physo132338;rank=2 scaffold_20 . exon 398029 398667 . + . ID=Physo132338.2;Parent=Physo132338;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 399192 399740 . + . ID=Physo132339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200111;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 399192 399740 . + . ID=Physo132339;Parent=Physo132339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 399192 399431 . + 0 ID=Physo132339;Parent=Physo132339;rank=1 scaffold_20 . exon 399192 399431 . + . ID=Physo132339.1;Parent=Physo132339;constitutive=1;rank=1 scaffold_20 . CDS 399525 399597 . + 0 ID=Physo132339;Parent=Physo132339;rank=2 scaffold_20 . CDS 399697 399740 . + 0 ID=Physo132339;Parent=Physo132339;rank=3 scaffold_20 . repeat_region 399503 399517 . ? . description=dust scaffold_20 . repeat_region 405242 405249 . ? . description=dust scaffold_20 . repeat_region 409024 409077 . ? . description=dust scaffold_20 . exon 399525 399597 . + . ID=Physo132339.2;Parent=Physo132339;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . exon 399697 399740 . + . ID=Physo132339.3;Parent=Physo132339;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 ensembl protein_coding_gene 400359 403766 . - . ID=Physo132340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200112;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 400359 403766 . - . ID=Physo132340;Parent=Physo132340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 400359 403766 . - 0 ID=Physo132340;Parent=Physo132340;rank=1 scaffold_20 . exon 400359 403766 . - . ID=Physo132340.1;Parent=Physo132340;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 404874 406957 . + . ID=Physo132341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200113;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 404874 406957 . + . ID=Physo132341;Parent=Physo132341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 404874 405168 . + 0 ID=Physo132341;Parent=Physo132341;rank=1 scaffold_20 . exon 404874 405168 . + . ID=Physo132341.1;Parent=Physo132341;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 405276 406957 . + 0 ID=Physo132341;Parent=Physo132341;rank=2 scaffold_20 . exon 405276 406957 . + . ID=Physo132341.2;Parent=Physo132341;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 407411 409158 . - . ID=Physo132342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200114;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 407411 409158 . - . ID=Physo132342;Parent=Physo132342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 407411 408841 . - 0 ID=Physo132342;Parent=Physo132342;rank=1 scaffold_20 . exon 407411 409158 . - . ID=Physo132342.1;Parent=Physo132342;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . repeat_region 413943 413984 . ? . description=trf scaffold_20 ensembl protein_coding_gene 414657 415320 . + . ID=Physo132343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200115;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 414657 415320 . + . ID=Physo132343;Parent=Physo132343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 414657 415131 . + 0 ID=Physo132343;Parent=Physo132343;rank=1 scaffold_20 . exon 414657 415131 . + . ID=Physo132343.1;Parent=Physo132343;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 415213 415288 . + 0 ID=Physo132343;Parent=Physo132343;rank=2 scaffold_20 . exon 415213 415288 . + . ID=Physo132343.2;Parent=Physo132343;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 415311 415320 . + 0 ID=Physo132343;Parent=Physo132343;rank=3 scaffold_20 . exon 415311 415320 . + . ID=Physo132343.3;Parent=Physo132343;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . repeat_region 415506 423159 . ? . description=dust scaffold_20 . repeat_region 424720 424728 . ? . description=dust scaffold_20 ensembl protein_coding_gene 423265 424616 . + . ID=Physo132344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200116;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 423265 424616 . + . ID=Physo132344;Parent=Physo132344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 423265 423867 . + . ID=Physo132344.1;Parent=Physo132344;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_20 . CDS 423506 423867 . + 0 ID=Physo132344;Parent=Physo132344;rank=1 scaffold_20 . CDS 423938 424616 . + 0 ID=Physo132344;Parent=Physo132344;rank=2 scaffold_20 . exon 423938 424616 . + . ID=Physo132344.2;Parent=Physo132344;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 ensembl protein_coding_gene 427095 427887 . + . ID=Physo132345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200117;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 427095 427887 . + . ID=Physo132345;Parent=Physo132345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 427095 427272 . + 0 ID=Physo132345;Parent=Physo132345;rank=1 scaffold_20 . exon 427095 427272 . + . ID=Physo132345.1;Parent=Physo132345;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 427346 427887 . + 0 ID=Physo132345;Parent=Physo132345;rank=2 scaffold_20 . exon 427346 427887 . + . ID=Physo132345.2;Parent=Physo132345;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 428668 432345 . - . ID=Physo132346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200118;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 428668 432345 . - . ID=Physo132346;Parent=Physo132346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 428668 428760 . - 0 ID=Physo132346;Parent=Physo132346;rank=3 scaffold_20 . exon 428668 428760 . - . ID=Physo132346.3;Parent=Physo132346;constitutive=1;rank=3 scaffold_20 . CDS 429093 429202 . - 0 ID=Physo132346;Parent=Physo132346;rank=2 scaffold_20 . exon 429093 429202 . - . ID=Physo132346.2;Parent=Physo132346;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 429630 432345 . - 0 ID=Physo132346;Parent=Physo132346;rank=1 scaffold_20 . repeat_region 433777 433808 . ? . description=trf scaffold_20 . exon 429630 432345 . - . ID=Physo132346.1;Parent=Physo132346;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 433304 437852 . - . ID=Physo132347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200119;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 433304 437852 . - . ID=Physo132347;Parent=Physo132347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 433304 433993 . - 0 ID=Physo132347;Parent=Physo132347;rank=6 scaffold_20 . exon 433304 433993 . - . ID=Physo132347.6;Parent=Physo132347;constitutive=1;rank=6 scaffold_20 . CDS 434150 434752 . - 0 ID=Physo132347;Parent=Physo132347;rank=5 scaffold_20 . exon 434150 434752 . - . ID=Physo132347.5;Parent=Physo132347;constitutive=1;rank=5 scaffold_20 . CDS 434773 436525 . - 0 ID=Physo132347;Parent=Physo132347;rank=4 scaffold_20 . exon 434773 436525 . - . ID=Physo132347.4;Parent=Physo132347;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 436590 437450 . - 0 ID=Physo132347;Parent=Physo132347;rank=3 scaffold_20 . exon 436590 437450 . - . ID=Physo132347.3;Parent=Physo132347;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_20 . CDS 437584 437767 . - 0 ID=Physo132347;Parent=Physo132347;rank=2 scaffold_20 . exon 437584 437767 . - . ID=Physo132347.2;Parent=Physo132347;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 437792 437852 . - 0 ID=Physo132347;Parent=Physo132347;rank=1 scaffold_20 . exon 437792 437852 . - . ID=Physo132347.1;Parent=Physo132347;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . biological_region 439720 439723 0.999 - . logic_name=eponine scaffold_20 . biological_region 446350 446350 0.999 - . logic_name=eponine scaffold_20 . biological_region 448040 448040 0.999 + . logic_name=eponine scaffold_20 . biological_region 448513 448516 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 449271 449627 . - . ID=Physo114414;biotype=protein_coding;external_name=estExt_Genewise1.C_200050;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 449271 449627 . - . ID=Physo114414;Parent=Physo114414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 449271 449579 . - 0 ID=Physo114414;Parent=Physo114414;rank=1 scaffold_20 . exon 449271 449627 . - . ID=Physo114414.1;Parent=Physo114414;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . repeat_region 453128 453171 . ? . description=trf scaffold_20 . repeat_region 453145 453189 . ? . description=trf scaffold_20 . repeat_region 454279 454408 . ? . description=trf scaffold_20 . repeat_region 455609 455660 . ? . description=trf scaffold_20 . repeat_region 455699 455740 . ? . description=trf scaffold_20 . repeat_region 456929 456942 . ? . description=dust scaffold_20 . repeat_region 458771 458826 . ? . description=trf scaffold_20 ensembl protein_coding_gene 453383 457368 . + . ID=Physo132349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200121;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 453383 457368 . + . ID=Physo132349;Parent=Physo132349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 453383 453618 . + 0 ID=Physo132349;Parent=Physo132349;rank=1 scaffold_20 . exon 453383 453618 . + . ID=Physo132349.1;Parent=Physo132349;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 453821 453926 . + 0 ID=Physo132349;Parent=Physo132349;rank=2 scaffold_20 . exon 453821 453926 . + . ID=Physo132349.2;Parent=Physo132349;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 454020 454832 . + 0 ID=Physo132349;Parent=Physo132349;rank=3 scaffold_20 . exon 454020 454832 . + . ID=Physo132349.3;Parent=Physo132349;constitutive=1;rank=3 scaffold_20 . CDS 454970 456677 . + 0 ID=Physo132349;Parent=Physo132349;rank=4 scaffold_20 . exon 454970 456677 . + . ID=Physo132349.4;Parent=Physo132349;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_20 . CDS 457163 457368 . + 0 ID=Physo132349;Parent=Physo132349;rank=5 scaffold_20 . exon 457163 457368 . + . ID=Physo132349.5;Parent=Physo132349;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 ensembl protein_coding_gene 457914 467698 . - . ID=Physo132350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200122;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 457914 467698 . - . ID=Physo132350;Parent=Physo132350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 457914 458948 . - 0 ID=Physo132350;Parent=Physo132350;rank=11 scaffold_20 . exon 457914 458948 . - . ID=Physo132350.11;Parent=Physo132350;constitutive=1;rank=11 scaffold_20 . CDS 459124 459474 . - 0 ID=Physo132350;Parent=Physo132350;rank=10 scaffold_20 . exon 459124 459474 . - . ID=Physo132350.10;Parent=Physo132350;constitutive=1;rank=10 scaffold_20 . CDS 459601 460615 . - 0 ID=Physo132350;Parent=Physo132350;rank=9 scaffold_20 . CDS 460821 460877 . - 0 ID=Physo132350;Parent=Physo132350;rank=8 scaffold_20 . CDS 460935 461232 . - 0 ID=Physo132350;Parent=Physo132350;rank=7 scaffold_20 . CDS 461272 462301 . - 0 ID=Physo132350;Parent=Physo132350;rank=6 scaffold_20 . CDS 462477 462827 . - 0 ID=Physo132350;Parent=Physo132350;rank=5 scaffold_20 . CDS 462954 464990 . - 0 ID=Physo132350;Parent=Physo132350;rank=4 scaffold_20 . CDS 465013 465706 . - 0 ID=Physo132350;Parent=Physo132350;rank=3 scaffold_20 . CDS 465805 467103 . - 0 ID=Physo132350;Parent=Physo132350;rank=2 scaffold_20 . CDS 467256 467698 . - 0 ID=Physo132350;Parent=Physo132350;rank=1 scaffold_20 . biological_region 459410 459411 0.999 - . logic_name=eponine scaffold_20 . biological_region 459890 459892 0.999 + . logic_name=eponine scaffold_20 . biological_region 461062 461063 0.999 - . logic_name=eponine scaffold_20 . biological_region 461086 461092 0.999 - . logic_name=eponine scaffold_20 . biological_region 461103 461104 0.999 + . logic_name=eponine scaffold_20 . biological_region 462079 462081 0.999 + . logic_name=eponine scaffold_20 . biological_region 462082 462086 0.999 - . logic_name=eponine scaffold_20 . biological_region 462139 462140 0.999 + . logic_name=eponine scaffold_20 . biological_region 462763 462764 0.999 - . logic_name=eponine scaffold_20 . biological_region 463243 463245 0.999 + . logic_name=eponine scaffold_20 . biological_region 464132 464134 0.999 + . logic_name=eponine scaffold_20 . biological_region 464231 464237 0.999 - . logic_name=eponine scaffold_20 . biological_region 464947 464951 0.999 - . logic_name=eponine scaffold_20 . biological_region 465561 465569 0.999 + . logic_name=eponine scaffold_20 . biological_region 466096 466099 0.999 + . logic_name=eponine scaffold_20 . biological_region 466140 466147 0.999 + . logic_name=eponine scaffold_20 . biological_region 466160 466165 0.999 + . logic_name=eponine scaffold_20 . biological_region 466187 466194 0.999 - . logic_name=eponine scaffold_20 . biological_region 466234 466239 0.999 - . logic_name=eponine scaffold_20 . biological_region 466268 466272 0.999 - . logic_name=eponine scaffold_20 . biological_region 466418 466419 0.999 - . logic_name=eponine scaffold_20 . biological_region 466702 466706 0.999 + . logic_name=eponine scaffold_20 . biological_region 467376 467378 0.999 + . logic_name=eponine scaffold_20 . biological_region 467986 467990 0.999 + . logic_name=eponine scaffold_20 . biological_region 468003 468005 0.999 - . logic_name=eponine scaffold_20 . biological_region 468414 468421 0.999 + . logic_name=eponine scaffold_20 . biological_region 468468 468471 0.999 - . logic_name=eponine scaffold_20 . biological_region 468502 468507 0.999 - . logic_name=eponine scaffold_20 . biological_region 468527 468529 0.999 + . logic_name=eponine scaffold_20 . biological_region 468648 468651 0.999 + . logic_name=eponine scaffold_20 . biological_region 468652 468658 0.999 - . logic_name=eponine scaffold_20 . biological_region 468681 468681 0.999 - . logic_name=eponine scaffold_20 . biological_region 468693 468699 0.999 - . logic_name=eponine scaffold_20 . biological_region 468915 468921 0.999 - . logic_name=eponine scaffold_20 . biological_region 468958 468960 0.999 - . logic_name=eponine scaffold_20 . biological_region 468999 469003 0.999 - . logic_name=eponine scaffold_20 . exon 459601 460615 . - . ID=Physo132350.9;Parent=Physo132350;constitutive=1;ensembl_phase=2;rank=9 scaffold_20 . exon 460821 460877 . - . ID=Physo132350.8;Parent=Physo132350;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_20 . exon 460935 461232 . - . ID=Physo132350.7;Parent=Physo132350;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_20 . exon 461272 462301 . - . ID=Physo132350.6;Parent=Physo132350;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_20 . exon 462477 462827 . - . ID=Physo132350.5;Parent=Physo132350;constitutive=1;rank=5 scaffold_20 . exon 462954 464990 . - . ID=Physo132350.4;Parent=Physo132350;constitutive=1;rank=4 scaffold_20 . exon 465013 465706 . - . ID=Physo132350.3;Parent=Physo132350;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . exon 465805 467103 . - . ID=Physo132350.2;Parent=Physo132350;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_20 . exon 467256 467698 . - . ID=Physo132350.1;Parent=Physo132350;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 468574 469650 . - . ID=Physo132351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200123;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 468574 469650 . - . ID=Physo132351;Parent=Physo132351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 468574 469650 . - 0 ID=Physo132351;Parent=Physo132351;rank=1 scaffold_20 . exon 468574 469650 . - . ID=Physo132351.1;Parent=Physo132351;constitutive=1;rank=1 scaffold_20 . repeat_region 470269 470300 . ? . description=trf scaffold_20 . repeat_region 471133 471200 . ? . description=trf scaffold_20 . repeat_region 471149 471222 . ? . description=trf scaffold_20 . repeat_region 471188 471214 . ? . description=trf scaffold_20 . repeat_region 476727 476814 . ? . description=dust scaffold_20 . repeat_region 476727 476814 . ? . description=trf scaffold_20 . repeat_region 476727 476814 . + . description=(TATG)n scaffold_20 . repeat_region 477894 478260 . ? . description=dust scaffold_20 ensembl protein_coding_gene 474970 481699 . + . ID=Physo114425;biotype=protein_coding;external_name=estExt_Genewise1.C_200061;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 474970 481699 . + . ID=Physo114425;Parent=Physo114425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 474970 475149 . + . ID=Physo114425.1;Parent=Physo114425;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 474982 475149 . + 0 ID=Physo114425;Parent=Physo114425;rank=1 scaffold_20 . CDS 478436 481699 . + 0 ID=Physo114425;Parent=Physo114425;rank=2 scaffold_20 . exon 478436 481699 . + . ID=Physo114425.2;Parent=Physo114425;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 469825 470621 . - . ID=Physo132352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200124;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 469825 470621 . - . ID=Physo132352;Parent=Physo132352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 469825 470388 . - 0 ID=Physo132352;Parent=Physo132352;rank=2 scaffold_20 . exon 469825 470388 . - . ID=Physo132352.2;Parent=Physo132352;constitutive=1;rank=2 scaffold_20 . CDS 470436 470621 . - 0 ID=Physo132352;Parent=Physo132352;rank=1 scaffold_20 . exon 470436 470621 . - . ID=Physo132352.1;Parent=Physo132352;constitutive=1;rank=1 scaffold_20 . biological_region 482169 482171 0.999 + . logic_name=eponine scaffold_20 . biological_region 482423 482423 0.999 - . logic_name=eponine scaffold_20 . biological_region 482451 482453 0.999 + . logic_name=eponine scaffold_20 . biological_region 488298 488302 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 486722 488605 . + . ID=Physo132356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200128;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 486722 488605 . + . ID=Physo132356;Parent=Physo132356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 486722 488605 . + 0 ID=Physo132356;Parent=Physo132356;rank=1 scaffold_20 . exon 486722 488605 . + . ID=Physo132356.1;Parent=Physo132356;constitutive=1;rank=1 scaffold_20 . repeat_region 494141 494148 . ? . description=dust scaffold_20 . repeat_region 496171 496178 . ? . description=dust scaffold_20 . repeat_region 497818 497830 . ? . description=dust scaffold_20 ensembl protein_coding_gene 490104 492002 . + . ID=Physo132357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200129;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 490104 492002 . + . ID=Physo132357;Parent=Physo132357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 490104 490367 . + 0 ID=Physo132357;Parent=Physo132357;rank=1 scaffold_20 . exon 490104 490367 . + . ID=Physo132357.1;Parent=Physo132357;constitutive=1;rank=1 scaffold_20 . CDS 490537 490627 . + 0 ID=Physo132357;Parent=Physo132357;rank=2 scaffold_20 . exon 490537 490627 . + . ID=Physo132357.2;Parent=Physo132357;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 491017 491396 . + 0 ID=Physo132357;Parent=Physo132357;rank=3 scaffold_20 . exon 491017 491396 . + . ID=Physo132357.3;Parent=Physo132357;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 491431 491748 . + 0 ID=Physo132357;Parent=Physo132357;rank=4 scaffold_20 . exon 491431 492002 . + . ID=Physo132357.4;Parent=Physo132357;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_20 . repeat_region 500059 500105 . ? . description=trf scaffold_20 . biological_region 503775 503775 0.999 + . logic_name=eponine scaffold_20 . biological_region 504701 504706 0.999 + . logic_name=eponine scaffold_20 . biological_region 506087 506092 0.999 - . logic_name=eponine scaffold_20 . biological_region 506796 506801 0.999 - . logic_name=eponine scaffold_20 . biological_region 509016 509020 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 500350 504437 . + . ID=Physo132358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200130;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 500350 504437 . + . ID=Physo132358;Parent=Physo132358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 500350 501015 . + 0 ID=Physo132358;Parent=Physo132358;rank=1 scaffold_20 . exon 500350 501015 . + . ID=Physo132358.1;Parent=Physo132358;constitutive=1;rank=1 scaffold_20 . CDS 501048 501485 . + 0 ID=Physo132358;Parent=Physo132358;rank=2 scaffold_20 . exon 501048 501485 . + . ID=Physo132358.2;Parent=Physo132358;constitutive=1;rank=2 scaffold_20 . CDS 501666 502115 . + 0 ID=Physo132358;Parent=Physo132358;rank=3 scaffold_20 . exon 501666 502115 . + . ID=Physo132358.3;Parent=Physo132358;constitutive=1;rank=3 scaffold_20 . CDS 502735 503133 . + 0 ID=Physo132358;Parent=Physo132358;rank=4 scaffold_20 . exon 502735 503133 . + . ID=Physo132358.4;Parent=Physo132358;constitutive=1;rank=4 scaffold_20 . CDS 503157 503505 . + 0 ID=Physo132358;Parent=Physo132358;rank=5 scaffold_20 . exon 503157 503505 . + . ID=Physo132358.5;Parent=Physo132358;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_20 . CDS 503652 503724 . + 0 ID=Physo132358;Parent=Physo132358;rank=6 scaffold_20 . exon 503652 503724 . + . ID=Physo132358.6;Parent=Physo132358;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_20 . CDS 503882 503909 . + 0 ID=Physo132358;Parent=Physo132358;rank=7 scaffold_20 . exon 503882 503909 . + . ID=Physo132358.7;Parent=Physo132358;constitutive=1;ensembl_phase=2;rank=7 scaffold_20 . CDS 504036 504437 . + 0 ID=Physo132358;Parent=Physo132358;rank=8 scaffold_20 . exon 504036 504437 . + . ID=Physo132358.8;Parent=Physo132358;constitutive=1;rank=8 scaffold_20 ensembl protein_coding_gene 506319 507226 . + . ID=Physo132359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200131;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 506319 507226 . + . ID=Physo132359;Parent=Physo132359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 506319 506654 . + 0 ID=Physo132359;Parent=Physo132359;rank=1 scaffold_20 . exon 506319 506654 . + . ID=Physo132359.1;Parent=Physo132359;constitutive=1;rank=1 scaffold_20 . CDS 506738 507226 . + 0 ID=Physo132359;Parent=Physo132359;rank=2 scaffold_20 . exon 506738 507226 . + . ID=Physo132359.2;Parent=Physo132359;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 508027 510362 . + . ID=Physo132360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200132;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 508027 510362 . + . ID=Physo132360;Parent=Physo132360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 508027 509206 . + 0 ID=Physo132360;Parent=Physo132360;rank=1 scaffold_20 . exon 508027 509206 . + . ID=Physo132360.1;Parent=Physo132360;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 509338 510362 . + 0 ID=Physo132360;Parent=Physo132360;rank=2 scaffold_20 . repeat_region 517999 518007 . ? . description=dust scaffold_20 . repeat_region 519157 519284 . + . description=(CAG)n scaffold_20 . exon 509338 510362 . + . ID=Physo132360.2;Parent=Physo132360;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 511174 512040 . - . ID=Physo132361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200133;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 511174 512040 . - . ID=Physo132361;Parent=Physo132361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 511174 512040 . - 0 ID=Physo132361;Parent=Physo132361;rank=1 scaffold_20 . exon 511174 512040 . - . ID=Physo132361.1;Parent=Physo132361;constitutive=1;rank=1 scaffold_20 . repeat_region 519185 519245 . ? . description=trf scaffold_20 . repeat_region 519197 519235 . ? . description=trf scaffold_20 . biological_region 521353 521355 0.999 + . logic_name=eponine scaffold_20 . biological_region 521412 521413 0.999 + . logic_name=eponine scaffold_20 . repeat_region 521619 521725 . ? . description=trf scaffold_20 . biological_region 526917 526919 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 521703 522320 . + . ID=Physo132362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200134;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 521703 522320 . + . ID=Physo132362;Parent=Physo132362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 521703 522320 . + 0 ID=Physo132362;Parent=Physo132362;rank=1 scaffold_20 . exon 521703 522320 . + . ID=Physo132362.1;Parent=Physo132362;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 522500 526364 . - . ID=Physo132363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200135;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 522500 526364 . - . ID=Physo132363;Parent=Physo132363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 522500 525487 . - 0 ID=Physo132363;Parent=Physo132363;rank=2 scaffold_20 . exon 522500 525487 . - . ID=Physo132363.2;Parent=Physo132363;constitutive=1;rank=2 scaffold_20 . CDS 525510 526364 . - 0 ID=Physo132363;Parent=Physo132363;rank=1 scaffold_20 . exon 525510 526364 . - . ID=Physo132363.1;Parent=Physo132363;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 527355 528098 . - . ID=Physo132364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200136;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 527355 528098 . - . ID=Physo132364;Parent=Physo132364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 527355 527741 . - 0 ID=Physo132364;Parent=Physo132364;rank=1 scaffold_20 . exon 527355 528098 . - . ID=Physo132364.1;Parent=Physo132364;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . repeat_region 528103 532364 . ? . description=dust scaffold_20 ensembl protein_coding_gene 536440 540087 . + . ID=Physo114447;biotype=protein_coding;external_name=estExt_Genewise1.C_200083;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 536440 540087 . + . ID=Physo114447;Parent=Physo114447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 536440 540087 . + . ID=Physo114447.1;Parent=Physo114447;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 536701 540087 . + 0 ID=Physo114447;Parent=Physo114447;rank=1 scaffold_20 . biological_region 542593 542594 0.999 + . logic_name=eponine scaffold_20 . biological_region 547902 547903 0.999 - . logic_name=eponine scaffold_20 . biological_region 548123 548128 0.999 - . logic_name=eponine scaffold_20 . repeat_region 548504 548544 . ? . description=trf scaffold_20 . biological_region 548789 548793 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 547359 548205 . - . ID=Physo132366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200138;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 547359 548205 . - . ID=Physo132366;Parent=Physo132366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 547359 547424 . - 0 ID=Physo132366;Parent=Physo132366;rank=2 scaffold_20 . exon 547359 547424 . - . ID=Physo132366.2;Parent=Physo132366;constitutive=1;rank=2 scaffold_20 . CDS 547510 548205 . - 0 ID=Physo132366;Parent=Physo132366;rank=1 scaffold_20 . exon 547510 548205 . - . ID=Physo132366.1;Parent=Physo132366;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 548436 549154 . + . ID=Physo132367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200139;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 548436 549154 . + . ID=Physo132367;Parent=Physo132367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 548436 549002 . + 0 ID=Physo132367;Parent=Physo132367;rank=1 scaffold_20 . exon 548436 549002 . + . ID=Physo132367.1;Parent=Physo132367;constitutive=1;rank=1 scaffold_20 . CDS 549077 549154 . + 0 ID=Physo132367;Parent=Physo132367;rank=2 scaffold_20 . exon 549077 549154 . + . ID=Physo132367.2;Parent=Physo132367;constitutive=1;rank=2 scaffold_20 . repeat_region 550040 550047 . ? . description=dust scaffold_20 ensembl protein_coding_gene 550376 551524 . - . ID=Physo132368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200140;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 550376 551524 . - . ID=Physo132368;Parent=Physo132368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 550376 550395 . - 0 ID=Physo132368;Parent=Physo132368;rank=4 scaffold_20 . exon 550376 550395 . - . ID=Physo132368.4;Parent=Physo132368;constitutive=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 550551 551007 . - 0 ID=Physo132368;Parent=Physo132368;rank=3 scaffold_20 . exon 550551 551007 . - . ID=Physo132368.3;Parent=Physo132368;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_20 . CDS 551084 551165 . - 0 ID=Physo132368;Parent=Physo132368;rank=2 scaffold_20 . exon 551084 551165 . - . ID=Physo132368.2;Parent=Physo132368;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 551236 551498 . - 0 ID=Physo132368;Parent=Physo132368;rank=1 scaffold_20 . exon 551236 551524 . - . ID=Physo132368.1;Parent=Physo132368;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_20 ensembl protein_coding_gene 558520 559753 . - . ID=Physo132369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200141;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 558520 559753 . - . ID=Physo132369;Parent=Physo132369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 558520 559275 . - 0 ID=Physo132369;Parent=Physo132369;rank=3 scaffold_20 . exon 558520 559275 . - . ID=Physo132369.3;Parent=Physo132369;constitutive=1;rank=3 scaffold_20 . CDS 559342 559423 . - 0 ID=Physo132369;Parent=Physo132369;rank=2 scaffold_20 . CDS 559503 559753 . - 0 ID=Physo132369;Parent=Physo132369;rank=1 scaffold_20 . biological_region 562835 562836 0.999 - . logic_name=eponine scaffold_20 . repeat_region 563444 563562 . ? . description=trf scaffold_20 . biological_region 564008 564010 0.999 - . logic_name=eponine scaffold_20 . biological_region 564050 564054 0.999 - . logic_name=eponine scaffold_20 . biological_region 564276 564276 0.999 + . logic_name=eponine scaffold_20 . biological_region 567992 567994 0.999 + . logic_name=eponine scaffold_20 . exon 559342 559423 . - . ID=Physo132369.2;Parent=Physo132369;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . exon 559503 559753 . - . ID=Physo132369.1;Parent=Physo132369;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 567075 567529 . - . ID=Physo132370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200142;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 567075 567529 . - . ID=Physo132370;Parent=Physo132370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 567075 567401 . - 0 ID=Physo132370;Parent=Physo132370;rank=3 scaffold_20 . exon 567075 567401 . - . ID=Physo132370.3;Parent=Physo132370;constitutive=1;rank=3 scaffold_20 . CDS 567443 567475 . - 0 ID=Physo132370;Parent=Physo132370;rank=2 scaffold_20 . exon 567443 567475 . - . ID=Physo132370.2;Parent=Physo132370;constitutive=1;rank=2 scaffold_20 . CDS 567497 567529 . - 0 ID=Physo132370;Parent=Physo132370;rank=1 scaffold_20 . exon 567497 567529 . - . ID=Physo132370.1;Parent=Physo132370;constitutive=1;rank=1 scaffold_20 . repeat_region 573329 573337 . ? . description=dust scaffold_20 ensembl protein_coding_gene 573733 574785 . - . ID=Physo132371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200143;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 573733 574785 . - . ID=Physo132371;Parent=Physo132371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 573733 574785 . - 0 ID=Physo132371;Parent=Physo132371;rank=1 scaffold_20 . exon 573733 574785 . - . ID=Physo132371.1;Parent=Physo132371;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 576591 577031 . - . ID=Physo132372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200144;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 576591 577031 . - . ID=Physo132372;Parent=Physo132372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 576591 577031 . - 0 ID=Physo132372;Parent=Physo132372;rank=1 scaffold_20 . exon 576591 577031 . - . ID=Physo132372.1;Parent=Physo132372;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 578000 579042 . + . ID=Physo132373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200145;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 578000 579042 . + . ID=Physo132373;Parent=Physo132373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 578000 578168 . + 0 ID=Physo132373;Parent=Physo132373;rank=1 scaffold_20 . exon 578000 578168 . + . ID=Physo132373.1;Parent=Physo132373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 578279 579042 . + 0 ID=Physo132373;Parent=Physo132373;rank=2 scaffold_20 . exon 578279 579042 . + . ID=Physo132373.2;Parent=Physo132373;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . biological_region 579482 579485 0.999 + . logic_name=eponine scaffold_20 . biological_region 579491 579493 0.999 + . logic_name=eponine scaffold_20 . biological_region 579499 579499 0.999 - . logic_name=eponine scaffold_20 . biological_region 580824 580825 0.999 - . logic_name=eponine scaffold_20 . biological_region 583974 583977 0.999 - . logic_name=eponine scaffold_20 . biological_region 587109 587114 0.999 - . logic_name=eponine scaffold_20 . biological_region 588661 588663 0.999 - . logic_name=eponine scaffold_20 . biological_region 588973 588976 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 579157 587789 . + . ID=Physo132374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200146;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 579157 587789 . + . ID=Physo132374;Parent=Physo132374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 579157 582941 . + 0 ID=Physo132374;Parent=Physo132374;rank=1 scaffold_20 . exon 579157 582941 . + . ID=Physo132374.1;Parent=Physo132374;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 582964 583016 . + 0 ID=Physo132374;Parent=Physo132374;rank=2 scaffold_20 . exon 582964 583016 . + . ID=Physo132374.2;Parent=Physo132374;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 583219 583394 . + 0 ID=Physo132374;Parent=Physo132374;rank=3 scaffold_20 . exon 583219 583394 . + . ID=Physo132374.3;Parent=Physo132374;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 583461 587789 . + 0 ID=Physo132374;Parent=Physo132374;rank=4 scaffold_20 . exon 583461 587789 . + . ID=Physo132374.4;Parent=Physo132374;constitutive=1;rank=4 scaffold_20 . repeat_region 589734 589741 . ? . description=dust scaffold_20 . repeat_region 595520 595529 . ? . description=dust scaffold_20 . repeat_region 596355 596393 . ? . description=trf scaffold_20 . repeat_region 596651 611115 . ? . description=dust scaffold_20 ensembl protein_coding_gene 592018 593118 . + . ID=Physo132375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200147;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 592018 593118 . + . ID=Physo132375;Parent=Physo132375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 592018 593118 . + 0 ID=Physo132375;Parent=Physo132375;rank=1 scaffold_20 . exon 592018 593118 . + . ID=Physo132375.1;Parent=Physo132375;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 593527 594111 . - . ID=Physo132376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200148;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 593527 594111 . - . ID=Physo132376;Parent=Physo132376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 593527 594111 . - 0 ID=Physo132376;Parent=Physo132376;rank=1 scaffold_20 . exon 593527 594111 . - . ID=Physo132376.1;Parent=Physo132376;constitutive=1;rank=1 scaffold_20 . repeat_region 596651 611115 . ? . description=dust scaffold_20 . repeat_region 613262 613272 . ? . description=dust scaffold_20 . repeat_region 614540 614589 . ? . description=dust scaffold_20 . repeat_region 615805 615848 . ? . description=trf scaffold_20 . repeat_region 615878 615906 . ? . description=dust scaffold_20 . biological_region 618775 618778 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 616774 618277 . + . ID=Physo132377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200149;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 616774 618277 . + . ID=Physo132377;Parent=Physo132377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 616774 616789 . + 0 ID=Physo132377;Parent=Physo132377;rank=1 scaffold_20 . exon 616774 616789 . + . ID=Physo132377.1;Parent=Physo132377;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 616897 617586 . + 0 ID=Physo132377;Parent=Physo132377;rank=2 scaffold_20 . exon 616897 617586 . + . ID=Physo132377.2;Parent=Physo132377;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 617668 617845 . + 0 ID=Physo132377;Parent=Physo132377;rank=3 scaffold_20 . exon 617668 617845 . + . ID=Physo132377.3;Parent=Physo132377;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_20 . CDS 618011 618123 . + 0 ID=Physo132377;Parent=Physo132377;rank=4 scaffold_20 . exon 618011 618123 . + . ID=Physo132377.4;Parent=Physo132377;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 618201 618277 . + 0 ID=Physo132377;Parent=Physo132377;rank=5 scaffold_20 . exon 618201 618277 . + . ID=Physo132377.5;Parent=Physo132377;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 ensembl protein_coding_gene 622735 630619 . - . ID=Physo132378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200150;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 622735 630619 . - . ID=Physo132378;Parent=Physo132378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 622735 623627 . - 0 ID=Physo132378;Parent=Physo132378;rank=10 scaffold_20 . exon 622735 623627 . - . ID=Physo132378.10;Parent=Physo132378;constitutive=1;ensembl_phase=1;rank=10 scaffold_20 . CDS 623794 624424 . - 0 ID=Physo132378;Parent=Physo132378;rank=9 scaffold_20 . exon 623794 624424 . - . ID=Physo132378.9;Parent=Physo132378;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_20 . CDS 624880 625117 . - 0 ID=Physo132378;Parent=Physo132378;rank=8 scaffold_20 . exon 624880 625117 . - . ID=Physo132378.8;Parent=Physo132378;constitutive=1;ensembl_phase=2;rank=8 scaffold_20 . CDS 625141 625515 . - 0 ID=Physo132378;Parent=Physo132378;rank=7 scaffold_20 . exon 625141 625515 . - . ID=Physo132378.7;Parent=Physo132378;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_20 . CDS 625612 627143 . - 0 ID=Physo132378;Parent=Physo132378;rank=6 scaffold_20 . exon 625612 627143 . - . ID=Physo132378.6;Parent=Physo132378;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_20 . CDS 627216 627341 . - 0 ID=Physo132378;Parent=Physo132378;rank=5 scaffold_20 . exon 627216 627341 . - . ID=Physo132378.5;Parent=Physo132378;constitutive=1;rank=5 scaffold_20 . CDS 627504 628628 . - 0 ID=Physo132378;Parent=Physo132378;rank=4 scaffold_20 . exon 627504 628628 . - . ID=Physo132378.4;Parent=Physo132378;constitutive=1;rank=4 scaffold_20 . CDS 629003 630122 . - 0 ID=Physo132378;Parent=Physo132378;rank=3 scaffold_20 . CDS 630189 630440 . - 0 ID=Physo132378;Parent=Physo132378;rank=2 scaffold_20 . CDS 630510 630619 . - 0 ID=Physo132378;Parent=Physo132378;rank=1 scaffold_20 . biological_region 631062 631063 0.999 + . logic_name=eponine scaffold_20 . biological_region 631432 631436 0.999 + . logic_name=eponine scaffold_20 . biological_region 631453 631458 0.999 + . logic_name=eponine scaffold_20 . biological_region 631734 631736 0.999 + . logic_name=eponine scaffold_20 . repeat_region 631868 631935 . ? . description=trf scaffold_20 . repeat_region 631877 631930 . ? . description=trf scaffold_20 . repeat_region 631929 632170 . ? . description=trf scaffold_20 . repeat_region 632772 632797 . ? . description=trf scaffold_20 . biological_region 637415 637417 0.999 - . logic_name=eponine scaffold_20 . biological_region 638112 638119 0.999 + . logic_name=eponine scaffold_20 . biological_region 638122 638126 0.999 - . logic_name=eponine scaffold_20 . biological_region 638138 638139 0.999 + . logic_name=eponine scaffold_20 . biological_region 638170 638172 0.999 - . logic_name=eponine scaffold_20 . biological_region 638448 638451 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 635393 635728 . + . ID=Physo108625;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200013;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 635393 635728 . + . ID=Physo108625;Parent=Physo108625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 635393 635728 . + 0 ID=Physo108625;Parent=Physo108625;rank=1 scaffold_20 . exon 635393 635728 . + . ID=Physo108625.1;Parent=Physo108625;constitutive=1;rank=1 scaffold_20 . exon 629003 630122 . - . ID=Physo132378.3;Parent=Physo132378;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . exon 630189 630440 . - . ID=Physo132378.2;Parent=Physo132378;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_20 . exon 630510 630619 . - . ID=Physo132378.1;Parent=Physo132378;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 631256 632776 . + . ID=Physo132379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200151;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 631256 632776 . + . ID=Physo132379;Parent=Physo132379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 631256 632776 . + 0 ID=Physo132379;Parent=Physo132379;rank=1 scaffold_20 . exon 631256 632776 . + . ID=Physo132379.1;Parent=Physo132379;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 632876 635105 . - . ID=Physo132380;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200152;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 632876 635105 . - . ID=Physo132380;Parent=Physo132380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 632876 634726 . - 0 ID=Physo132380;Parent=Physo132380;rank=3 scaffold_20 . exon 632876 634726 . - . ID=Physo132380.3;Parent=Physo132380;constitutive=1;rank=3 scaffold_20 . CDS 634818 634928 . - 0 ID=Physo132380;Parent=Physo132380;rank=2 scaffold_20 . exon 634818 634928 . - . ID=Physo132380.2;Parent=Physo132380;constitutive=1;rank=2 scaffold_20 . CDS 635037 635105 . - 0 ID=Physo132380;Parent=Physo132380;rank=1 scaffold_20 . exon 635037 635105 . - . ID=Physo132380.1;Parent=Physo132380;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 635822 638264 . - . ID=Physo132382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200154;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 635822 638264 . - . ID=Physo132382;Parent=Physo132382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 635822 636121 . - . ID=Physo132382.3;Parent=Physo132382;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_20 . CDS 635888 636121 . - 0 ID=Physo132382;Parent=Physo132382;rank=3 scaffold_20 . CDS 636201 637764 . - 0 ID=Physo132382;Parent=Physo132382;rank=2 scaffold_20 . exon 636201 637764 . - . ID=Physo132382.2;Parent=Physo132382;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 637837 638264 . - 0 ID=Physo132382;Parent=Physo132382;rank=1 scaffold_20 . exon 637837 638264 . - . ID=Physo132382.1;Parent=Physo132382;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 638444 639028 . + . ID=Physo132383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200155;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 638444 639028 . + . ID=Physo132383;Parent=Physo132383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 638444 638572 . + 0 ID=Physo132383;Parent=Physo132383;rank=1 scaffold_20 . exon 638444 638572 . + . ID=Physo132383.1;Parent=Physo132383;constitutive=1;rank=1 scaffold_20 . CDS 638651 639028 . + 0 ID=Physo132383;Parent=Physo132383;rank=2 scaffold_20 . exon 638651 639028 . + . ID=Physo132383.2;Parent=Physo132383;constitutive=1;rank=2 scaffold_20 . repeat_region 641503 641521 . ? . description=dust scaffold_20 . repeat_region 642272 642282 . ? . description=dust scaffold_20 ensembl protein_coding_gene 639380 641410 . - . ID=Physo132384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200156;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 639380 641410 . - . ID=Physo132384;Parent=Physo132384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 639380 641410 . - 0 ID=Physo132384;Parent=Physo132384;rank=1 scaffold_20 . exon 639380 641410 . - . ID=Physo132384.1;Parent=Physo132384;constitutive=1;rank=1 scaffold_20 . biological_region 650283 650288 0.999 + . logic_name=eponine scaffold_20 . repeat_region 650550 650586 . ? . description=trf scaffold_20 . biological_region 650678 650678 0.999 + . logic_name=eponine scaffold_20 . biological_region 652039 652042 0.999 + . logic_name=eponine scaffold_20 . biological_region 652066 652072 0.999 + . logic_name=eponine scaffold_20 . biological_region 652089 652094 0.999 + . logic_name=eponine scaffold_20 . biological_region 652121 652125 0.999 - . logic_name=eponine scaffold_20 . biological_region 652137 652144 0.999 - . logic_name=eponine scaffold_20 . repeat_region 656138 656169 . ? . description=trf scaffold_20 . biological_region 657226 657228 0.999 + . logic_name=eponine scaffold_20 . biological_region 657252 657256 0.999 + . logic_name=eponine scaffold_20 . biological_region 657354 657359 0.999 - . logic_name=eponine scaffold_20 . biological_region 657438 657441 0.999 - . logic_name=eponine scaffold_20 . biological_region 658720 658721 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 656044 657344 . - . ID=Physo132389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200161;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 656044 657344 . - . ID=Physo132389;Parent=Physo132389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 656044 657150 . - 0 ID=Physo132389;Parent=Physo132389;rank=2 scaffold_20 . exon 656044 657150 . - . ID=Physo132389.2;Parent=Physo132389;constitutive=1;rank=2 scaffold_20 . CDS 657189 657344 . - 0 ID=Physo132389;Parent=Physo132389;rank=1 scaffold_20 . exon 657189 657344 . - . ID=Physo132389.1;Parent=Physo132389;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 658549 660238 . + . ID=Physo132390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200162;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 658549 660238 . + . ID=Physo132390;Parent=Physo132390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 658549 659149 . + 0 ID=Physo132390;Parent=Physo132390;rank=1 scaffold_20 . exon 658549 659149 . + . ID=Physo132390.1;Parent=Physo132390;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 659217 660118 . + 0 ID=Physo132390;Parent=Physo132390;rank=2 scaffold_20 . CDS 660182 660238 . + 0 ID=Physo132390;Parent=Physo132390;rank=3 scaffold_20 ensembl protein_coding_gene 650409 652297 . + . ID=Physo156497;biotype=protein_coding;external_name=C_scaffold_20000023;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 650409 652297 . + . ID=Physo156497;Parent=Physo156497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 650409 650822 . + 0 ID=Physo156497;Parent=Physo156497;rank=1 scaffold_20 . exon 650409 650822 . + . ID=Physo156497.1;Parent=Physo156497;constitutive=1;rank=1 scaffold_20 . CDS 650902 651003 . + 0 ID=Physo156497;Parent=Physo156497;rank=2 scaffold_20 . exon 650902 651003 . + . ID=Physo156497.2;Parent=Physo156497;constitutive=1;rank=2 scaffold_20 . CDS 651098 651279 . + 0 ID=Physo156497;Parent=Physo156497;rank=3 scaffold_20 . exon 651098 651279 . + . ID=Physo156497.3;Parent=Physo156497;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 651360 651465 . + 0 ID=Physo156497;Parent=Physo156497;rank=4 scaffold_20 . exon 651360 651465 . + . ID=Physo156497.4;Parent=Physo156497;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 651804 651890 . + 0 ID=Physo156497;Parent=Physo156497;rank=5 scaffold_20 . exon 651804 651890 . + . ID=Physo156497.5;Parent=Physo156497;constitutive=1;rank=5 scaffold_20 . CDS 651977 652297 . + 0 ID=Physo156497;Parent=Physo156497;rank=6 scaffold_20 . exon 651977 652297 . + . ID=Physo156497.6;Parent=Physo156497;constitutive=1;rank=6 scaffold_20 ensembl protein_coding_gene 652496 653701 . - . ID=Physo156500;biotype=protein_coding;external_name=C_scaffold_20000026;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 652496 653701 . - . ID=Physo156500;Parent=Physo156500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 652496 652646 . - 0 ID=Physo156500;Parent=Physo156500;rank=5 scaffold_20 . exon 652496 652646 . - . ID=Physo156500.5;Parent=Physo156500;constitutive=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 652715 652834 . - 0 ID=Physo156500;Parent=Physo156500;rank=4 scaffold_20 . exon 652715 652834 . - . ID=Physo156500.4;Parent=Physo156500;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_20 . CDS 652903 653001 . - 0 ID=Physo156500;Parent=Physo156500;rank=3 scaffold_20 . exon 652903 653001 . - . ID=Physo156500.3;Parent=Physo156500;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_20 . CDS 653087 653314 . - 0 ID=Physo156500;Parent=Physo156500;rank=2 scaffold_20 . exon 653087 653314 . - . ID=Physo156500.2;Parent=Physo156500;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_20 . CDS 653403 653701 . - 0 ID=Physo156500;Parent=Physo156500;rank=1 scaffold_20 . exon 653403 653701 . - . ID=Physo156500.1;Parent=Physo156500;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 654074 655241 . + . ID=Physo156501;biotype=protein_coding;external_name=C_scaffold_20000027;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 654074 655241 . + . ID=Physo156501;Parent=Physo156501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 654074 654300 . + 0 ID=Physo156501;Parent=Physo156501;rank=1 scaffold_20 . exon 654074 654300 . + . ID=Physo156501.1;Parent=Physo156501;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 654381 654462 . + 0 ID=Physo156501;Parent=Physo156501;rank=2 scaffold_20 . exon 654381 654462 . + . ID=Physo156501.2;Parent=Physo156501;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 654567 655241 . + 0 ID=Physo156501;Parent=Physo156501;rank=3 scaffold_20 . exon 654567 655241 . + . ID=Physo156501.3;Parent=Physo156501;constitutive=1;rank=3 scaffold_20 . repeat_region 665308 665377 . ? . description=dust scaffold_20 . repeat_region 668226 668238 . ? . description=dust scaffold_20 . exon 659217 660118 . + . ID=Physo132390.2;Parent=Physo132390;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . exon 660182 660238 . + . ID=Physo132390.3;Parent=Physo132390;constitutive=1;rank=3 scaffold_20 ensembl protein_coding_gene 660526 662016 . - . ID=Physo132391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200163;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 660526 662016 . - . ID=Physo132391;Parent=Physo132391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 660526 662016 . - 0 ID=Physo132391;Parent=Physo132391;rank=1 scaffold_20 . exon 660526 662016 . - . ID=Physo132391.1;Parent=Physo132391;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 663482 664729 . - . ID=Physo132392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200164;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 663482 664729 . - . ID=Physo132392;Parent=Physo132392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 663482 664729 . - 0 ID=Physo132392;Parent=Physo132392;rank=1 scaffold_20 . exon 663482 664729 . - . ID=Physo132392.1;Parent=Physo132392;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 665599 667089 . - . ID=Physo132393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200165;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 665599 667089 . - . ID=Physo132393;Parent=Physo132393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 665599 667089 . - 0 ID=Physo132393;Parent=Physo132393;rank=1 scaffold_20 . exon 665599 667089 . - . ID=Physo132393.1;Parent=Physo132393;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 668556 669803 . - . ID=Physo132394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200166;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 668556 669803 . - . ID=Physo132394;Parent=Physo132394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 668556 669803 . - 0 ID=Physo132394;Parent=Physo132394;rank=1 scaffold_20 . exon 668556 669803 . - . ID=Physo132394.1;Parent=Physo132394;constitutive=1;rank=1 scaffold_20 . biological_region 669526 669528 0.999 + . logic_name=eponine scaffold_20 . biological_region 669732 669735 0.999 + . logic_name=eponine scaffold_20 . biological_region 669752 669756 0.999 + . logic_name=eponine scaffold_20 . biological_region 670872 670875 0.999 - . logic_name=eponine scaffold_20 . biological_region 671018 671020 0.999 + . logic_name=eponine scaffold_20 . biological_region 671172 671174 0.999 - . logic_name=eponine scaffold_20 . biological_region 671293 671296 0.999 - . logic_name=eponine scaffold_20 . biological_region 672201 672202 0.999 + . logic_name=eponine scaffold_20 . biological_region 672534 672536 0.999 + . logic_name=eponine scaffold_20 . biological_region 674481 674481 0.999 + . logic_name=eponine scaffold_20 . biological_region 674504 674506 0.999 + . logic_name=eponine scaffold_20 . biological_region 676324 676325 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 670586 672750 . - . ID=Physo132395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200167;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 670586 672750 . - . ID=Physo132395;Parent=Physo132395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 670586 670654 . - 0 ID=Physo132395;Parent=Physo132395;rank=2 scaffold_20 . exon 670586 670654 . - . ID=Physo132395.2;Parent=Physo132395;constitutive=1;rank=2 scaffold_20 . CDS 670738 672750 . - 0 ID=Physo132395;Parent=Physo132395;rank=1 scaffold_20 . exon 670738 672750 . - . ID=Physo132395.1;Parent=Physo132395;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 675161 676751 . - . ID=Physo132396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200168;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 675161 676751 . - . ID=Physo132396;Parent=Physo132396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 675161 675392 . - 0 ID=Physo132396;Parent=Physo132396;rank=9 scaffold_20 . exon 675161 675392 . - . ID=Physo132396.9;Parent=Physo132396;constitutive=1;ensembl_phase=2;rank=9 scaffold_20 . CDS 675458 675501 . - 0 ID=Physo132396;Parent=Physo132396;rank=8 scaffold_20 . exon 675458 675501 . - . ID=Physo132396.8;Parent=Physo132396;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_20 . CDS 675556 675585 . - 0 ID=Physo132396;Parent=Physo132396;rank=7 scaffold_20 . exon 675556 675585 . - . ID=Physo132396.7;Parent=Physo132396;constitutive=1;rank=7 scaffold_20 . CDS 675694 675905 . - 0 ID=Physo132396;Parent=Physo132396;rank=6 scaffold_20 . exon 675694 675905 . - . ID=Physo132396.6;Parent=Physo132396;constitutive=1;ensembl_phase=1;rank=6 scaffold_20 . CDS 676067 676100 . - 0 ID=Physo132396;Parent=Physo132396;rank=5 scaffold_20 . exon 676067 676100 . - . ID=Physo132396.5;Parent=Physo132396;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_20 . CDS 676174 676305 . - 0 ID=Physo132396;Parent=Physo132396;rank=4 scaffold_20 . exon 676174 676305 . - . ID=Physo132396.4;Parent=Physo132396;constitutive=1;rank=4 scaffold_20 . CDS 676366 676387 . - 0 ID=Physo132396;Parent=Physo132396;rank=3 scaffold_20 . exon 676366 676387 . - . ID=Physo132396.3;Parent=Physo132396;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 676459 676631 . - 0 ID=Physo132396;Parent=Physo132396;rank=2 scaffold_20 . exon 676459 676631 . - . ID=Physo132396.2;Parent=Physo132396;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_20 . CDS 676710 676751 . - 0 ID=Physo132396;Parent=Physo132396;rank=1 scaffold_20 . exon 676710 676751 . - . ID=Physo132396.1;Parent=Physo132396;constitutive=1;rank=1 scaffold_20 . repeat_region 679887 679895 . ? . description=dust scaffold_20 . repeat_region 680391 680440 . ? . description=dust scaffold_20 . repeat_region 681249 681298 . ? . description=dust scaffold_20 . repeat_region 682175 682200 . ? . description=dust scaffold_20 . repeat_region 682175 682200 . ? . description=trf scaffold_20 . repeat_region 683401 683439 . ? . description=trf scaffold_20 . repeat_region 686993 687000 . ? . description=dust scaffold_20 . repeat_region 687317 687345 . ? . description=trf scaffold_20 . repeat_region 687444 687503 . ? . description=dust scaffold_20 . repeat_region 688716 688732 . ? . description=dust scaffold_20 ensembl protein_coding_gene 680440 681699 . + . ID=Physo114481;biotype=protein_coding;external_name=estExt_Genewise1.C_200117;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 680440 681699 . + . ID=Physo114481;Parent=Physo114481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 680440 681240 . + . ID=Physo114481.1;Parent=Physo114481;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 680443 681240 . + 0 ID=Physo114481;Parent=Physo114481;rank=1 scaffold_20 . CDS 681376 681699 . + 0 ID=Physo114481;Parent=Physo114481;rank=2 scaffold_20 . exon 681376 681699 . + . ID=Physo114481.2;Parent=Physo114481;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 683821 685477 . + . ID=Physo132398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200170;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 683821 685477 . + . ID=Physo132398;Parent=Physo132398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 683821 684122 . + 0 ID=Physo132398;Parent=Physo132398;rank=1 scaffold_20 . exon 683821 684122 . + . ID=Physo132398.1;Parent=Physo132398;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 684208 685477 . + 0 ID=Physo132398;Parent=Physo132398;rank=2 scaffold_20 . exon 684208 685477 . + . ID=Physo132398.2;Parent=Physo132398;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 ensembl protein_coding_gene 686867 688419 . + . ID=Physo156503;biotype=protein_coding;external_name=C_scaffold_20000029;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 686867 688419 . + . ID=Physo156503;Parent=Physo156503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 686867 686933 . + 0 ID=Physo156503;Parent=Physo156503;rank=1 scaffold_20 . exon 686867 686933 . + . ID=Physo156503.1;Parent=Physo156503;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 687015 687380 . + 0 ID=Physo156503;Parent=Physo156503;rank=2 scaffold_20 . exon 687015 687380 . + . ID=Physo156503.2;Parent=Physo156503;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 687605 687640 . + 0 ID=Physo156503;Parent=Physo156503;rank=3 scaffold_20 . exon 687605 687640 . + . ID=Physo156503.3;Parent=Physo156503;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 687686 687790 . + 0 ID=Physo156503;Parent=Physo156503;rank=4 scaffold_20 . exon 687686 687790 . + . ID=Physo156503.4;Parent=Physo156503;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 687863 688050 . + 0 ID=Physo156503;Parent=Physo156503;rank=5 scaffold_20 . exon 687863 688050 . + . ID=Physo156503.5;Parent=Physo156503;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 688096 688202 . + 0 ID=Physo156503;Parent=Physo156503;rank=6 scaffold_20 . exon 688096 688202 . + . ID=Physo156503.6;Parent=Physo156503;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_20 . CDS 688242 688419 . + 0 ID=Physo156503;Parent=Physo156503;rank=7 scaffold_20 . exon 688242 688419 . + . ID=Physo156503.7;Parent=Physo156503;constitutive=1;ensembl_phase=2;rank=7 scaffold_20 . biological_region 689212 689218 0.999 + . logic_name=eponine scaffold_20 . biological_region 689240 689247 0.999 + . logic_name=eponine scaffold_20 . biological_region 689265 689268 0.999 + . logic_name=eponine scaffold_20 . biological_region 689303 689305 0.999 - . logic_name=eponine scaffold_20 . biological_region 689350 689353 0.999 - . logic_name=eponine scaffold_20 . biological_region 689818 689823 0.999 + . logic_name=eponine scaffold_20 . biological_region 694813 694817 0.999 + . logic_name=eponine scaffold_20 . biological_region 694868 694871 0.999 + . logic_name=eponine scaffold_20 . biological_region 694893 694894 0.999 - . logic_name=eponine scaffold_20 . biological_region 694946 694954 0.999 + . logic_name=eponine scaffold_20 . biological_region 695036 695039 0.999 + . logic_name=eponine scaffold_20 . biological_region 695059 695064 0.999 - . logic_name=eponine scaffold_20 . biological_region 695114 695122 0.999 + . logic_name=eponine scaffold_20 . biological_region 695203 695208 0.999 + . logic_name=eponine scaffold_20 . biological_region 695227 695232 0.999 - . logic_name=eponine scaffold_20 . biological_region 695281 695290 0.999 + . logic_name=eponine scaffold_20 . biological_region 695371 695376 0.999 + . logic_name=eponine scaffold_20 . biological_region 695395 695400 0.999 - . logic_name=eponine scaffold_20 . biological_region 695449 695458 0.999 + . logic_name=eponine scaffold_20 . biological_region 695540 695543 0.999 + . logic_name=eponine scaffold_20 . biological_region 695563 695568 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 691508 692632 . - . ID=Physo114485;biotype=protein_coding;external_name=estExt_Genewise1.C_200121;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 691508 692632 . - . ID=Physo114485;Parent=Physo114485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 691508 692152 . - 0 ID=Physo114485;Parent=Physo114485;rank=1 scaffold_20 . exon 691508 692632 . - . ID=Physo114485.1;Parent=Physo114485;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 ensembl protein_coding_gene 689158 690422 . + . ID=Physo132400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200172;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 689158 690422 . + . ID=Physo132400;Parent=Physo132400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 689158 689970 . + 0 ID=Physo132400;Parent=Physo132400;rank=1 scaffold_20 . exon 689158 689970 . + . ID=Physo132400.1;Parent=Physo132400;constitutive=1;rank=1 scaffold_20 . CDS 690045 690135 . + 0 ID=Physo132400;Parent=Physo132400;rank=2 scaffold_20 . exon 690045 690135 . + . ID=Physo132400.2;Parent=Physo132400;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 690210 690343 . + 0 ID=Physo132400;Parent=Physo132400;rank=3 scaffold_20 . exon 690210 690422 . + . ID=Physo132400.3;Parent=Physo132400;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_20 ensembl protein_coding_gene 694307 704011 . - . ID=Physo132402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200174;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 694307 704011 . - . ID=Physo132402;Parent=Physo132402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 694307 694695 . - 0 ID=Physo132402;Parent=Physo132402;rank=3 scaffold_20 . exon 694307 694695 . - . ID=Physo132402.3;Parent=Physo132402;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 694808 696693 . - 0 ID=Physo132402;Parent=Physo132402;rank=2 scaffold_20 . exon 694808 696693 . - . ID=Physo132402.2;Parent=Physo132402;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 703458 704011 . - 0 ID=Physo132402;Parent=Physo132402;rank=1 scaffold_20 . repeat_region 696742 703422 . ? . description=dust scaffold_20 . repeat_region 705270 705526 . ? . description=trf scaffold_20 . exon 703458 704011 . - . ID=Physo132402.1;Parent=Physo132402;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 ensembl protein_coding_gene 705155 706697 . + . ID=Physo132403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200175;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 705155 706697 . + . ID=Physo132403;Parent=Physo132403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 705155 705164 . + 0 ID=Physo132403;Parent=Physo132403;rank=1 scaffold_20 . exon 705155 705164 . + . ID=Physo132403.1;Parent=Physo132403;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 705211 705410 . + 0 ID=Physo132403;Parent=Physo132403;rank=2 scaffold_20 . exon 705211 705410 . + . ID=Physo132403.2;Parent=Physo132403;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 705448 705765 . + 0 ID=Physo132403;Parent=Physo132403;rank=3 scaffold_20 . exon 705448 705765 . + . ID=Physo132403.3;Parent=Physo132403;constitutive=1;rank=3 scaffold_20 . CDS 705819 706661 . + 0 ID=Physo132403;Parent=Physo132403;rank=4 scaffold_20 . exon 705819 706697 . + . ID=Physo132403.4;Parent=Physo132403;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_20 ensembl protein_coding_gene 706934 707806 . + . ID=Physo132404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200176;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 706934 707806 . + . ID=Physo132404;Parent=Physo132404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 706934 707806 . + . ID=Physo132404.1;Parent=Physo132404;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 706949 707806 . + 0 ID=Physo132404;Parent=Physo132404;rank=1 scaffold_20 ensembl protein_coding_gene 708662 710833 . + . ID=Physo132405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200177;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 708662 710833 . + . ID=Physo132405;Parent=Physo132405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 708662 710833 . + 0 ID=Physo132405;Parent=Physo132405;rank=1 scaffold_20 . exon 708662 710833 . + . ID=Physo132405.1;Parent=Physo132405;constitutive=1;rank=1 scaffold_20 . biological_region 709466 709467 0.999 + . logic_name=eponine scaffold_20 . biological_region 714629 714630 0.999 + . logic_name=eponine scaffold_20 . biological_region 718681 718682 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 715121 716006 . + . ID=Physo114489;biotype=protein_coding;external_name=estExt_Genewise1.C_200125;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 715121 716006 . + . ID=Physo114489;Parent=Physo114489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 715121 715210 . + 0 ID=Physo114489;Parent=Physo114489;rank=1 scaffold_20 . exon 715121 715210 . + . ID=Physo114489.1;Parent=Physo114489;constitutive=1;rank=1 scaffold_20 . CDS 715270 715370 . + 0 ID=Physo114489;Parent=Physo114489;rank=2 scaffold_20 . exon 715270 715370 . + . ID=Physo114489.2;Parent=Physo114489;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_20 . CDS 715440 715491 . + 0 ID=Physo114489;Parent=Physo114489;rank=3 scaffold_20 . exon 715440 715491 . + . ID=Physo114489.3;Parent=Physo114489;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 715554 715593 . + 0 ID=Physo114489;Parent=Physo114489;rank=4 scaffold_20 . exon 715554 715593 . + . ID=Physo114489.4;Parent=Physo114489;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_20 . CDS 715660 715790 . + 0 ID=Physo114489;Parent=Physo114489;rank=5 scaffold_20 . exon 715660 715790 . + . ID=Physo114489.5;Parent=Physo114489;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 . CDS 715860 716006 . + 0 ID=Physo114489;Parent=Physo114489;rank=6 scaffold_20 . exon 715860 716006 . + . ID=Physo114489.6;Parent=Physo114489;constitutive=1;rank=6 scaffold_20 ensembl protein_coding_gene 711061 712464 . - . ID=Physo132406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200178;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 711061 712464 . - . ID=Physo132406;Parent=Physo132406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 711061 712464 . - 0 ID=Physo132406;Parent=Physo132406;rank=1 scaffold_20 . exon 711061 712464 . - . ID=Physo132406.1;Parent=Physo132406;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 716951 718134 . - . ID=Physo132408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200180;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 716951 718134 . - . ID=Physo132408;Parent=Physo132408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 716951 717322 . - . ID=Physo132408.2;Parent=Physo132408;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_20 . CDS 717136 717322 . - 0 ID=Physo132408;Parent=Physo132408;rank=2 scaffold_20 . CDS 717511 718109 . - 0 ID=Physo132408;Parent=Physo132408;rank=1 scaffold_20 . exon 717511 718134 . - . ID=Physo132408.1;Parent=Physo132408;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_20 ensembl protein_coding_gene 718479 720334 . - . ID=Physo132409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200181;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 718479 720334 . - . ID=Physo132409;Parent=Physo132409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 718479 718978 . - 0 ID=Physo132409;Parent=Physo132409;rank=3 scaffold_20 . exon 718479 718978 . - . ID=Physo132409.3;Parent=Physo132409;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 719060 719413 . - 0 ID=Physo132409;Parent=Physo132409;rank=2 scaffold_20 . CDS 719485 720334 . - 0 ID=Physo132409;Parent=Physo132409;rank=1 scaffold_20 . repeat_region 723348 723355 . ? . description=dust scaffold_20 . exon 719060 719413 . - . ID=Physo132409.2;Parent=Physo132409;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_20 . exon 719485 720334 . - . ID=Physo132409.1;Parent=Physo132409;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 721065 724071 . - . ID=Physo132410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200182;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 721065 724071 . - . ID=Physo132410;Parent=Physo132410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 721065 722513 . - 0 ID=Physo132410;Parent=Physo132410;rank=5 scaffold_20 . exon 721065 722513 . - . ID=Physo132410.5;Parent=Physo132410;constitutive=1;rank=5 scaffold_20 . CDS 722589 722817 . - 0 ID=Physo132410;Parent=Physo132410;rank=4 scaffold_20 . exon 722589 722817 . - . ID=Physo132410.4;Parent=Physo132410;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 723040 723299 . - 0 ID=Physo132410;Parent=Physo132410;rank=3 scaffold_20 . exon 723040 723299 . - . ID=Physo132410.3;Parent=Physo132410;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 723362 723457 . - 0 ID=Physo132410;Parent=Physo132410;rank=2 scaffold_20 . exon 723362 723457 . - . ID=Physo132410.2;Parent=Physo132410;constitutive=1;rank=2 scaffold_20 . CDS 723511 724071 . - 0 ID=Physo132410;Parent=Physo132410;rank=1 scaffold_20 . exon 723511 724071 . - . ID=Physo132410.1;Parent=Physo132410;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 724425 725892 . + . ID=Physo132411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200183;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 724425 725892 . + . ID=Physo132411;Parent=Physo132411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 724425 724526 . + . ID=Physo132411.1;Parent=Physo132411;constitutive=1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 724449 724526 . + 0 ID=Physo132411;Parent=Physo132411;rank=1 scaffold_20 . CDS 724639 724833 . + 0 ID=Physo132411;Parent=Physo132411;rank=2 scaffold_20 . exon 724639 724833 . + . ID=Physo132411.2;Parent=Physo132411;constitutive=1;rank=2 scaffold_20 . CDS 724927 725132 . + 0 ID=Physo132411;Parent=Physo132411;rank=3 scaffold_20 . exon 724927 725132 . + . ID=Physo132411.3;Parent=Physo132411;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 725212 725740 . + 0 ID=Physo132411;Parent=Physo132411;rank=4 scaffold_20 . exon 725212 725892 . + . ID=Physo132411.4;Parent=Physo132411;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_20 ensembl protein_coding_gene 726263 727515 . + . ID=Physo132412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200184;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 726263 727515 . + . ID=Physo132412;Parent=Physo132412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 726263 726468 . + 0 ID=Physo132412;Parent=Physo132412;rank=1 scaffold_20 . exon 726263 726468 . + . ID=Physo132412.1;Parent=Physo132412;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 726528 726669 . + 0 ID=Physo132412;Parent=Physo132412;rank=2 scaffold_20 . exon 726528 726669 . + . ID=Physo132412.2;Parent=Physo132412;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 726904 727079 . + 0 ID=Physo132412;Parent=Physo132412;rank=3 scaffold_20 . exon 726904 727079 . + . ID=Physo132412.3;Parent=Physo132412;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 727124 727220 . + 0 ID=Physo132412;Parent=Physo132412;rank=4 scaffold_20 . exon 727124 727220 . + . ID=Physo132412.4;Parent=Physo132412;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 727279 727515 . + 0 ID=Physo132412;Parent=Physo132412;rank=5 scaffold_20 . exon 727279 727515 . + . ID=Physo132412.5;Parent=Physo132412;constitutive=1;rank=5 scaffold_20 . repeat_region 729984 730086 . ? . description=trf scaffold_20 . biological_region 730120 730124 0.999 - . logic_name=eponine scaffold_20 . biological_region 730654 730657 0.999 + . logic_name=eponine scaffold_20 . repeat_region 732664 732709 . ? . description=trf scaffold_20 . repeat_region 736600 736753 . ? . description=trf scaffold_20 . repeat_region 738683 738836 . ? . description=trf scaffold_20 ensembl protein_coding_gene 729002 730273 . + . ID=Physo132413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200185;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 729002 730273 . + . ID=Physo132413;Parent=Physo132413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 729002 729011 . + 0 ID=Physo132413;Parent=Physo132413;rank=1 scaffold_20 . exon 729002 729011 . + . ID=Physo132413.1;Parent=Physo132413;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 729131 729140 . + 0 ID=Physo132413;Parent=Physo132413;rank=2 scaffold_20 . exon 729131 729140 . + . ID=Physo132413.2;Parent=Physo132413;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 729603 729876 . + 0 ID=Physo132413;Parent=Physo132413;rank=3 scaffold_20 . exon 729603 729876 . + . ID=Physo132413.3;Parent=Physo132413;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 729941 730273 . + 0 ID=Physo132413;Parent=Physo132413;rank=4 scaffold_20 . exon 729941 730273 . + . ID=Physo132413.4;Parent=Physo132413;constitutive=1;rank=4 scaffold_20 ensembl protein_coding_gene 730787 731443 . - . ID=Physo132414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200186;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 730787 731443 . - . ID=Physo132414;Parent=Physo132414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 730787 731037 . - 0 ID=Physo132414;Parent=Physo132414;rank=2 scaffold_20 . exon 730787 731037 . - . ID=Physo132414.2;Parent=Physo132414;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 731131 731443 . - 0 ID=Physo132414;Parent=Physo132414;rank=1 scaffold_20 . exon 731131 731443 . - . ID=Physo132414.1;Parent=Physo132414;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 733656 734735 . - . ID=Physo132415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200187;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 733656 734735 . - . ID=Physo132415;Parent=Physo132415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 733656 733675 . - 0 ID=Physo132415;Parent=Physo132415;rank=2 scaffold_20 . exon 733656 733675 . - . ID=Physo132415.2;Parent=Physo132415;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 734408 734735 . - 0 ID=Physo132415;Parent=Physo132415;rank=1 scaffold_20 . exon 734408 734735 . - . ID=Physo132415.1;Parent=Physo132415;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . repeat_region 739410 740175 . ? . description=dust scaffold_20 . repeat_region 740176 748167 . ? . description=dust scaffold_20 . repeat_region 748687 748840 . ? . description=trf scaffold_20 . repeat_region 748700 748827 . ? . description=trf scaffold_20 . repeat_region 753411 753564 . ? . description=trf scaffold_20 . repeat_region 755124 755206 . ? . description=trf scaffold_20 . repeat_region 756333 756489 . ? . description=trf scaffold_20 . repeat_region 756333 756489 . ? . description=trf scaffold_20 . repeat_region 756353 756390 . ? . description=trf scaffold_20 . repeat_region 756567 756620 . ? . description=trf scaffold_20 ensembl protein_coding_gene 751352 751960 . + . ID=Physo132416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200188;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 751352 751960 . + . ID=Physo132416;Parent=Physo132416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 751352 751960 . + 0 ID=Physo132416;Parent=Physo132416;rank=1 scaffold_20 . exon 751352 751960 . + . ID=Physo132416.1;Parent=Physo132416;constitutive=1;rank=1 scaffold_20 . biological_region 758992 758995 0.999 + . logic_name=eponine scaffold_20 . biological_region 759034 759039 0.999 + . logic_name=eponine scaffold_20 . biological_region 759045 759049 0.999 + . logic_name=eponine scaffold_20 . biological_region 759054 759055 0.999 + . logic_name=eponine scaffold_20 . biological_region 759055 759062 0.999 - . logic_name=eponine scaffold_20 . biological_region 759070 759076 0.999 + . logic_name=eponine scaffold_20 . biological_region 759112 759116 0.999 + . logic_name=eponine scaffold_20 . biological_region 759121 759126 0.999 - . logic_name=eponine scaffold_20 . biological_region 759161 759167 0.999 - . logic_name=eponine scaffold_20 . biological_region 759642 759646 0.999 + . logic_name=eponine scaffold_20 . biological_region 760244 760249 0.999 + . logic_name=eponine scaffold_20 . repeat_region 762126 762133 . ? . description=dust scaffold_20 . repeat_region 762205 762224 . ? . description=dust scaffold_20 . repeat_region 762843 762859 . ? . description=dust scaffold_20 . repeat_region 764142 764157 . ? . description=dust scaffold_20 ensembl protein_coding_gene 758950 760140 . + . ID=Physo132417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200189;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 758950 760140 . + . ID=Physo132417;Parent=Physo132417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 758950 759531 . + 0 ID=Physo132417;Parent=Physo132417;rank=1 scaffold_20 . exon 758950 759531 . + . ID=Physo132417.1;Parent=Physo132417;constitutive=1;rank=1 scaffold_20 . CDS 759592 760140 . + 0 ID=Physo132417;Parent=Physo132417;rank=2 scaffold_20 . exon 759592 760140 . + . ID=Physo132417.2;Parent=Physo132417;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 763880 764438 . - . ID=Physo132418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200190;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 763880 764438 . - . ID=Physo132418;Parent=Physo132418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 763880 764139 . - 0 ID=Physo132418;Parent=Physo132418;rank=3 scaffold_20 . exon 763880 764139 . - . ID=Physo132418.3;Parent=Physo132418;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 764208 764358 . - 0 ID=Physo132418;Parent=Physo132418;rank=2 scaffold_20 . exon 764208 764358 . - . ID=Physo132418.2;Parent=Physo132418;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_20 . CDS 764385 764438 . - 0 ID=Physo132418;Parent=Physo132418;rank=1 scaffold_20 . exon 764385 764438 . - . ID=Physo132418.1;Parent=Physo132418;constitutive=1;rank=1 scaffold_20 . repeat_region 772941 773227 . - . description=GypsyPi-1c_LTR scaffold_20 ensembl protein_coding_gene 769863 770354 . - . ID=Physo132419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200191;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 769863 770354 . - . ID=Physo132419;Parent=Physo132419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 769863 770354 . - 0 ID=Physo132419;Parent=Physo132419;rank=1 scaffold_20 . exon 769863 770354 . - . ID=Physo132419.1;Parent=Physo132419;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 777326 777717 . + . ID=Physo132420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200192;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 777326 777717 . + . ID=Physo132420;Parent=Physo132420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 777326 777339 . + 0 ID=Physo132420;Parent=Physo132420;rank=1 scaffold_20 . exon 777326 777339 . + . ID=Physo132420.1;Parent=Physo132420;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . CDS 777417 777717 . + 0 ID=Physo132420;Parent=Physo132420;rank=2 scaffold_20 . exon 777417 777717 . + . ID=Physo132420.2;Parent=Physo132420;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 ensembl protein_coding_gene 778136 779722 . + . ID=Physo132421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200193;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 778136 779722 . + . ID=Physo132421;Parent=Physo132421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 778136 779722 . + 0 ID=Physo132421;Parent=Physo132421;rank=1 scaffold_20 . exon 778136 779722 . + . ID=Physo132421.1;Parent=Physo132421;constitutive=1;rank=1 scaffold_20 . biological_region 779709 779709 0.999 - . logic_name=eponine scaffold_20 . repeat_region 779844 779860 . ? . description=dust scaffold_20 . repeat_region 780436 780443 . ? . description=dust scaffold_20 . repeat_region 780601 780609 . ? . description=dust scaffold_20 . repeat_region 783102 783109 . ? . description=dust scaffold_20 . biological_region 786117 786120 0.999 + . logic_name=eponine scaffold_20 . biological_region 786203 786207 0.999 + . logic_name=eponine scaffold_20 . biological_region 787499 787500 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 781379 782320 . - . ID=Physo132422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200194;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 781379 782320 . - . ID=Physo132422;Parent=Physo132422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 781379 782320 . - 0 ID=Physo132422;Parent=Physo132422;rank=1 scaffold_20 . exon 781379 782320 . - . ID=Physo132422.1;Parent=Physo132422;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 784671 790368 . - . ID=Physo132423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200195;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 784671 790368 . - . ID=Physo132423;Parent=Physo132423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 784671 786374 . - . ID=Physo132423.7;Parent=Physo132423;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_20 . CDS 784788 786374 . - 0 ID=Physo132423;Parent=Physo132423;rank=7 scaffold_20 . CDS 786820 786881 . - 0 ID=Physo132423;Parent=Physo132423;rank=6 scaffold_20 . exon 786820 786881 . - . ID=Physo132423.6;Parent=Physo132423;constitutive=1;ensembl_phase=1;rank=6 scaffold_20 . CDS 787018 787106 . - 0 ID=Physo132423;Parent=Physo132423;rank=5 scaffold_20 . exon 787018 787106 . - . ID=Physo132423.5;Parent=Physo132423;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_20 . CDS 787196 787467 . - 0 ID=Physo132423;Parent=Physo132423;rank=4 scaffold_20 . exon 787196 787467 . - . ID=Physo132423.4;Parent=Physo132423;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_20 . CDS 787496 788182 . - 0 ID=Physo132423;Parent=Physo132423;rank=3 scaffold_20 . exon 787496 788182 . - . ID=Physo132423.3;Parent=Physo132423;constitutive=1;rank=3 scaffold_20 . CDS 788238 788358 . - 0 ID=Physo132423;Parent=Physo132423;rank=2 scaffold_20 . exon 788238 788358 . - . ID=Physo132423.2;Parent=Physo132423;constitutive=1;ensembl_phase=2;rank=2 scaffold_20 . CDS 788504 790368 . - 0 ID=Physo132423;Parent=Physo132423;rank=1 scaffold_20 . exon 788504 790368 . - . ID=Physo132423.1;Parent=Physo132423;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_20 . repeat_region 789454 789473 . ? . description=trf scaffold_20 . repeat_region 790425 790483 . ? . description=trf scaffold_20 . repeat_region 795209 795252 . ? . description=trf scaffold_20 . repeat_region 795209 795252 . ? . description=trf scaffold_20 ensembl protein_coding_gene 790878 791738 . + . ID=Physo132424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200196;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 790878 791738 . + . ID=Physo132424;Parent=Physo132424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 790878 791375 . + 0 ID=Physo132424;Parent=Physo132424;rank=1 scaffold_20 . exon 790878 791375 . + . ID=Physo132424.1;Parent=Physo132424;constitutive=1;rank=1 scaffold_20 . CDS 791469 791738 . + 0 ID=Physo132424;Parent=Physo132424;rank=2 scaffold_20 . exon 791469 791738 . + . ID=Physo132424.2;Parent=Physo132424;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 793253 793828 . - . ID=Physo132425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200197;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 793253 793828 . - . ID=Physo132425;Parent=Physo132425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 793253 793828 . - 0 ID=Physo132425;Parent=Physo132425;rank=1 scaffold_20 . exon 793253 793828 . - . ID=Physo132425.1;Parent=Physo132425;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 795537 798858 . + . ID=Physo132426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200198;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 795537 798858 . + . ID=Physo132426;Parent=Physo132426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 795537 796323 . + 0 ID=Physo132426;Parent=Physo132426;rank=1 scaffold_20 . exon 795537 796323 . + . ID=Physo132426.1;Parent=Physo132426;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 796387 797299 . + 0 ID=Physo132426;Parent=Physo132426;rank=2 scaffold_20 . exon 796387 797299 . + . ID=Physo132426.2;Parent=Physo132426;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 797860 797948 . + 0 ID=Physo132426;Parent=Physo132426;rank=3 scaffold_20 . exon 797860 797948 . + . ID=Physo132426.3;Parent=Physo132426;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_20 . CDS 798022 798111 . + 0 ID=Physo132426;Parent=Physo132426;rank=4 scaffold_20 . exon 798022 798111 . + . ID=Physo132426.4;Parent=Physo132426;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_20 . CDS 798167 798858 . + 0 ID=Physo132426;Parent=Physo132426;rank=5 scaffold_20 . exon 798167 798858 . + . ID=Physo132426.5;Parent=Physo132426;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 . biological_region 802161 802162 0.999 + . logic_name=eponine scaffold_20 . biological_region 802258 802261 0.999 - . logic_name=eponine scaffold_20 . biological_region 803117 803122 0.999 - . logic_name=eponine scaffold_20 . biological_region 805387 805388 0.999 + . logic_name=eponine scaffold_20 . biological_region 805797 805799 0.999 + . logic_name=eponine scaffold_20 . repeat_region 805872 805894 . ? . description=dust scaffold_20 . biological_region 805914 805917 0.999 - . logic_name=eponine scaffold_20 . biological_region 807950 807954 0.999 - . logic_name=eponine scaffold_20 . biological_region 808034 808040 0.999 - . logic_name=eponine scaffold_20 ensembl protein_coding_gene 799784 802585 . + . ID=Physo132427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200199;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 799784 802585 . + . ID=Physo132427;Parent=Physo132427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 799784 802471 . + 0 ID=Physo132427;Parent=Physo132427;rank=1 scaffold_20 . exon 799784 802585 . + . ID=Physo132427.1;Parent=Physo132427;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_20 ensembl protein_coding_gene 803355 805969 . - . ID=Physo132428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200200;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 803355 805969 . - . ID=Physo132428;Parent=Physo132428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 803355 805969 . - . ID=Physo132428.1;Parent=Physo132428;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 803545 805905 . - 0 ID=Physo132428;Parent=Physo132428;rank=1 scaffold_20 ensembl protein_coding_gene 807773 809367 . + . ID=Physo132429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200201;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 807773 809367 . + . ID=Physo132429;Parent=Physo132429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 807773 807869 . + 0 ID=Physo132429;Parent=Physo132429;rank=1 scaffold_20 . exon 807773 807869 . + . ID=Physo132429.1;Parent=Physo132429;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 807917 809367 . + 0 ID=Physo132429;Parent=Physo132429;rank=2 scaffold_20 . exon 807917 809367 . + . ID=Physo132429.2;Parent=Physo132429;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 ensembl protein_coding_gene 809969 811555 . + . ID=Physo132430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200202;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 809969 811555 . + . ID=Physo132430;Parent=Physo132430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 809969 811555 . + 0 ID=Physo132430;Parent=Physo132430;rank=1 scaffold_20 . exon 809969 811555 . + . ID=Physo132430.1;Parent=Physo132430;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 812184 812705 . + . ID=Physo132431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200203;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 812184 812705 . + . ID=Physo132431;Parent=Physo132431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 812184 812705 . + 0 ID=Physo132431;Parent=Physo132431;rank=1 scaffold_20 . exon 812184 812705 . + . ID=Physo132431.1;Parent=Physo132431;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 813986 816604 . + . ID=Physo132432;biotype=protein_coding;description=PsAvh306 [Source:UniProtKB/TrEMBL%3BAcc:E0W4V6];external_name=estExt_fgenesh1_pg.C_200204;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 813986 816604 . + . ID=Physo132432;Parent=Physo132432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 813986 814865 . + 0 ID=Physo132432;Parent=Physo132432;rank=1 scaffold_20 . exon 813986 814865 . + . ID=Physo132432.1;Parent=Physo132432;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 814933 815674 . + 0 ID=Physo132432;Parent=Physo132432;rank=2 scaffold_20 . exon 814933 815674 . + . ID=Physo132432.2;Parent=Physo132432;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_20 . CDS 816124 816604 . + 0 ID=Physo132432;Parent=Physo132432;rank=3 scaffold_20 . exon 816124 816604 . + . ID=Physo132432.3;Parent=Physo132432;constitutive=1;ensembl_phase=2;rank=3 scaffold_20 ensembl protein_coding_gene 816904 825628 . - . ID=Physo132433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200205;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 816904 825628 . - . ID=Physo132433;Parent=Physo132433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 816904 825465 . - 0 ID=Physo132433;Parent=Physo132433;rank=2 scaffold_20 . exon 816904 825465 . - . ID=Physo132433.2;Parent=Physo132433;constitutive=1;rank=2 scaffold_20 . CDS 825626 825628 . - 0 ID=Physo132433;Parent=Physo132433;rank=1 scaffold_20 . biological_region 819256 819257 0.999 - . logic_name=eponine scaffold_20 . biological_region 819975 819978 0.999 + . logic_name=eponine scaffold_20 . biological_region 819999 820004 0.999 - . logic_name=eponine scaffold_20 . biological_region 822181 822187 0.999 + . logic_name=eponine scaffold_20 . biological_region 822236 822236 0.999 + . logic_name=eponine scaffold_20 . biological_region 823408 823409 0.999 - . logic_name=eponine scaffold_20 . biological_region 824197 824199 0.999 - . logic_name=eponine scaffold_20 . biological_region 824251 824253 0.999 + . logic_name=eponine scaffold_20 . biological_region 824304 824308 0.999 + . logic_name=eponine scaffold_20 . biological_region 824514 824516 0.999 + . logic_name=eponine scaffold_20 . biological_region 824622 824624 0.999 - . logic_name=eponine scaffold_20 . biological_region 824741 824744 0.999 + . logic_name=eponine scaffold_20 . biological_region 825012 825014 0.999 + . logic_name=eponine scaffold_20 . biological_region 826274 826275 0.999 - . logic_name=eponine scaffold_20 . repeat_region 827233 827263 . ? . description=trf scaffold_20 . repeat_region 827235 827265 . ? . description=dust scaffold_20 . biological_region 827372 827378 0.999 + . logic_name=eponine scaffold_20 . biological_region 827434 827434 0.999 + . logic_name=eponine scaffold_20 ensembl protein_coding_gene 828353 830056 . + . ID=Physo108626;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_200014;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 828353 830056 . + . ID=Physo108626;Parent=Physo108626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 828353 830056 . + 0 ID=Physo108626;Parent=Physo108626;rank=1 scaffold_20 . exon 828353 830056 . + . ID=Physo108626.1;Parent=Physo108626;constitutive=1;rank=1 scaffold_20 . exon 825626 825628 . - . ID=Physo132433.1;Parent=Physo132433;constitutive=1;rank=1 scaffold_20 ensembl protein_coding_gene 830939 833543 . - . ID=Physo132435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200207;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 830939 833543 . - . ID=Physo132435;Parent=Physo132435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 830939 831625 . - 0 ID=Physo132435;Parent=Physo132435;rank=5 scaffold_20 . exon 830939 831625 . - . ID=Physo132435.5;Parent=Physo132435;constitutive=1;rank=5 scaffold_20 . CDS 831652 831784 . - 0 ID=Physo132435;Parent=Physo132435;rank=4 scaffold_20 . exon 831652 831784 . - . ID=Physo132435.4;Parent=Physo132435;constitutive=1;ensembl_phase=2;rank=4 scaffold_20 . CDS 831874 832346 . - 0 ID=Physo132435;Parent=Physo132435;rank=3 scaffold_20 . exon 831874 832346 . - . ID=Physo132435.3;Parent=Physo132435;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_20 . CDS 832410 833123 . - 0 ID=Physo132435;Parent=Physo132435;rank=2 scaffold_20 . exon 832410 833123 . - . ID=Physo132435.2;Parent=Physo132435;constitutive=1;rank=2 scaffold_20 . CDS 833514 833543 . - 0 ID=Physo132435;Parent=Physo132435;rank=1 scaffold_20 . exon 833514 833543 . - . ID=Physo132435.1;Parent=Physo132435;constitutive=1;rank=1 scaffold_20 . repeat_region 840652 840659 . ? . description=dust scaffold_20 . repeat_region 841015 841055 . ? . description=trf scaffold_20 . repeat_region 841148 841155 . ? . description=dust scaffold_20 . repeat_region 844884 844898 . ? . description=dust scaffold_20 . biological_region 845725 845726 0.999 + . logic_name=eponine scaffold_20 . repeat_region 846684 846743 . ? . description=dust scaffold_20 . repeat_region 846686 846721 . ? . description=trf scaffold_20 . biological_region 846997 846999 0.999 + . logic_name=eponine scaffold_20 . repeat_region 847638 847665 . ? . description=dust scaffold_20 ensembl protein_coding_gene 838669 840792 . + . ID=Physo132436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200208;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 838669 840792 . + . ID=Physo132436;Parent=Physo132436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 838669 839374 . + 0 ID=Physo132436;Parent=Physo132436;rank=1 scaffold_20 . exon 838669 839374 . + . ID=Physo132436.1;Parent=Physo132436;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 . CDS 839618 839764 . + 0 ID=Physo132436;Parent=Physo132436;rank=2 scaffold_20 . exon 839618 839764 . + . ID=Physo132436.2;Parent=Physo132436;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 839916 840085 . + 0 ID=Physo132436;Parent=Physo132436;rank=3 scaffold_20 . exon 839916 840085 . + . ID=Physo132436.3;Parent=Physo132436;constitutive=1;ensembl_phase=1;rank=3 scaffold_20 . CDS 840116 840584 . + 0 ID=Physo132436;Parent=Physo132436;rank=4 scaffold_20 . exon 840116 840584 . + . ID=Physo132436.4;Parent=Physo132436;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_20 . CDS 840665 840792 . + 0 ID=Physo132436;Parent=Physo132436;rank=5 scaffold_20 . exon 840665 840792 . + . ID=Physo132436.5;Parent=Physo132436;constitutive=1;ensembl_phase=1;rank=5 scaffold_20 ensembl protein_coding_gene 845235 845977 . + . ID=Physo132437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200209;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 845235 845977 . + . ID=Physo132437;Parent=Physo132437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 845235 845351 . + 0 ID=Physo132437;Parent=Physo132437;rank=1 scaffold_20 . exon 845235 845351 . + . ID=Physo132437.1;Parent=Physo132437;constitutive=1;rank=1 scaffold_20 . CDS 845381 845977 . + 0 ID=Physo132437;Parent=Physo132437;rank=2 scaffold_20 . exon 845381 845977 . + . ID=Physo132437.2;Parent=Physo132437;constitutive=1;rank=2 scaffold_20 ensembl protein_coding_gene 846524 847099 . - . ID=Physo132438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200210;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 846524 847099 . - . ID=Physo132438;Parent=Physo132438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . CDS 846524 846681 . - 0 ID=Physo132438;Parent=Physo132438;rank=2 scaffold_20 . exon 846524 846681 . - . ID=Physo132438.2;Parent=Physo132438;constitutive=1;ensembl_phase=1;rank=2 scaffold_20 . CDS 846751 847099 . - 0 ID=Physo132438;Parent=Physo132438;rank=1 scaffold_20 . exon 846751 847099 . - . ID=Physo132438.1;Parent=Physo132438;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_20 ensembl protein_coding_gene 847964 852031 . - . ID=Physo132439;biotype=protein_coding;description=Pleiotropic drug resistance transporter [Source:UniProtKB/TrEMBL%3BAcc:Q6B3Y4];external_name=PDR1;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 847964 852031 . - . ID=Physo132439;Parent=Physo132439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 847964 852031 . - . ID=Physo132439.1;Parent=Physo132439;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_20 . CDS 847967 852031 . - 0 ID=Physo132439;Parent=Physo132439;rank=1 scaffold_20 ensembl protein_coding_gene 856771 858589 . - . ID=Physo132440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_200212;logic_name=jgi_physo1_1 scaffold_20 ensembl transcript 856771 858589 . - . ID=Physo132440;Parent=Physo132440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_20 . exon 856771 858589 . - . ID=Physo132440.1;Parent=Physo132440;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_20 . CDS 856896 858575 . - 0 ID=Physo132440;Parent=Physo132440;rank=1 ##gff-version 3 ##sequence-region scaffold_19 1 866029 scaffold_19 . repeat_region 530 561 . ? . description=dust scaffold_19 . repeat_region 532 560 . ? . description=trf scaffold_19 . biological_region 1645 1649 0.999 - . logic_name=eponine scaffold_19 . biological_region 2180 2182 0.999 + . logic_name=eponine scaffold_19 . biological_region 2226 2230 0.999 + . logic_name=eponine scaffold_19 . biological_region 2264 2265 0.999 + . logic_name=eponine scaffold_19 . biological_region 2289 2297 0.999 + . logic_name=eponine scaffold_19 . biological_region 2327 2330 0.999 - . logic_name=eponine scaffold_19 . biological_region 2361 2362 0.999 - . logic_name=eponine scaffold_19 . biological_region 2401 2406 0.999 - . logic_name=eponine scaffold_19 . biological_region 2486 2487 0.999 - . logic_name=eponine scaffold_19 . biological_region 2566 2566 0.999 + . logic_name=eponine scaffold_19 . biological_region 2581 2586 0.999 - . logic_name=eponine scaffold_19 . biological_region 2638 2642 0.999 + . logic_name=eponine scaffold_19 . repeat_region 3277 29864 . ? . description=dust scaffold_19 ensembl protein_coding_gene 506 3252 . + . ID=Physo132051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190001;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 506 3252 . + . ID=Physo132051;Parent=Physo132051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 506 689 . + . ID=Physo132051.1;Parent=Physo132051;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 636 689 . + 0 ID=Physo132051;Parent=Physo132051;rank=1 scaffold_19 . CDS 784 964 . + 0 ID=Physo132051;Parent=Physo132051;rank=2 scaffold_19 . exon 784 964 . + . ID=Physo132051.2;Parent=Physo132051;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 1049 1248 . + 0 ID=Physo132051;Parent=Physo132051;rank=3 scaffold_19 . exon 1049 1248 . + . ID=Physo132051.3;Parent=Physo132051;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 1331 1417 . + 0 ID=Physo132051;Parent=Physo132051;rank=4 scaffold_19 . exon 1331 1417 . + . ID=Physo132051.4;Parent=Physo132051;constitutive=1;rank=4 scaffold_19 . CDS 1502 1775 . + 0 ID=Physo132051;Parent=Physo132051;rank=5 scaffold_19 . exon 1502 1775 . + . ID=Physo132051.5;Parent=Physo132051;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_19 . CDS 1920 1980 . + 0 ID=Physo132051;Parent=Physo132051;rank=6 scaffold_19 . exon 1920 1980 . + . ID=Physo132051.6;Parent=Physo132051;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_19 . CDS 2202 2393 . + 0 ID=Physo132051;Parent=Physo132051;rank=7 scaffold_19 . exon 2202 2393 . + . ID=Physo132051.7;Parent=Physo132051;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_19 . CDS 2494 3211 . + 0 ID=Physo132051;Parent=Physo132051;rank=8 scaffold_19 . exon 2494 3211 . + . ID=Physo132051.8;Parent=Physo132051;constitutive=1;ensembl_phase=2;rank=8 scaffold_19 . CDS 3244 3252 . + 0 ID=Physo132051;Parent=Physo132051;rank=9 scaffold_19 . exon 3244 3252 . + . ID=Physo132051.9;Parent=Physo132051;constitutive=1;rank=9 scaffold_19 . repeat_region 3277 29864 . ? . description=dust scaffold_19 . repeat_region 29865 30036 . ? . description=dust scaffold_19 . repeat_region 30095 30238 . + . description=(CTG)n scaffold_19 . repeat_region 34383 34408 . ? . description=trf scaffold_19 . biological_region 35106 35110 0.999 - . logic_name=eponine scaffold_19 . biological_region 35341 35342 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 32325 34193 . - . ID=Physo132052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190002;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 32325 34193 . - . ID=Physo132052;Parent=Physo132052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 32325 34193 . - 0 ID=Physo132052;Parent=Physo132052;rank=1 scaffold_19 . exon 32325 34193 . - . ID=Physo132052.1;Parent=Physo132052;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 34597 36441 . - . ID=Physo132053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190003;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 34597 36441 . - . ID=Physo132053;Parent=Physo132053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 34597 36441 . - 0 ID=Physo132053;Parent=Physo132053;rank=1 scaffold_19 . exon 34597 36441 . - . ID=Physo132053.1;Parent=Physo132053;constitutive=1;rank=1 scaffold_19 . repeat_region 41605 41612 . ? . description=dust scaffold_19 . repeat_region 44962 44975 . ? . description=dust scaffold_19 . repeat_region 47104 47113 . ? . description=dust scaffold_19 . repeat_region 47137 47158 . ? . description=dust scaffold_19 ensembl protein_coding_gene 40523 41354 . + . ID=Physo132054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190004;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 40523 41354 . + . ID=Physo132054;Parent=Physo132054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 40523 41213 . + 0 ID=Physo132054;Parent=Physo132054;rank=1 scaffold_19 . exon 40523 41213 . + . ID=Physo132054.1;Parent=Physo132054;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 41341 41354 . + 0 ID=Physo132054;Parent=Physo132054;rank=2 scaffold_19 . exon 41341 41354 . + . ID=Physo132054.2;Parent=Physo132054;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . repeat_region 50009 50268 . ? . description=trf scaffold_19 . repeat_region 51031 51394 . ? . description=trf scaffold_19 . biological_region 52814 52816 0.999 - . logic_name=eponine scaffold_19 . repeat_region 60867 60897 . ? . description=dust scaffold_19 . repeat_region 62746 62755 . ? . description=dust scaffold_19 . repeat_region 69511 69693 . - . description=GypsyPi-1c_LTR scaffold_19 ensembl protein_coding_gene 66414 66928 . - . ID=Physo114300;biotype=protein_coding;external_name=estExt_Genewise1.C_190138;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 66414 66928 . - . ID=Physo114300;Parent=Physo114300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 66414 66928 . - . ID=Physo114300.1;Parent=Physo114300;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 66455 66709 . - 0 ID=Physo114300;Parent=Physo114300;rank=1 scaffold_19 . repeat_region 69815 70137 . - . description=GypsyPi-1c_I-int scaffold_19 . biological_region 70068 70071 0.999 + . logic_name=eponine scaffold_19 . biological_region 70264 70269 0.999 + . logic_name=eponine scaffold_19 . repeat_region 70446 76445 . - . description=GypsyPi-1c_I-int scaffold_19 . biological_region 71037 71040 0.999 - . logic_name=eponine scaffold_19 . biological_region 71087 71089 0.999 - . logic_name=eponine scaffold_19 . biological_region 71768 71772 0.999 + . logic_name=eponine scaffold_19 . biological_region 73474 73476 0.999 + . logic_name=eponine scaffold_19 . repeat_region 74381 74463 . ? . description=trf scaffold_19 . repeat_region 74388 74486 . ? . description=trf scaffold_19 . repeat_region 74469 74636 . ? . description=trf scaffold_19 . biological_region 75925 75929 0.999 + . logic_name=eponine scaffold_19 . biological_region 75944 75947 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 70001 70983 . + . ID=Physo132055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190005;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 70001 70983 . + . ID=Physo132055;Parent=Physo132055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 70001 70648 . + 0 ID=Physo132055;Parent=Physo132055;rank=1 scaffold_19 . exon 70001 70648 . + . ID=Physo132055.1;Parent=Physo132055;constitutive=1;rank=1 scaffold_19 . CDS 70672 70983 . + 0 ID=Physo132055;Parent=Physo132055;rank=2 scaffold_19 . exon 70672 70983 . + . ID=Physo132055.2;Parent=Physo132055;constitutive=1;rank=2 scaffold_19 ensembl protein_coding_gene 71640 76358 . - . ID=Physo132056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190006;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 71640 76358 . - . ID=Physo132056;Parent=Physo132056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 71640 72116 . - 0 ID=Physo132056;Parent=Physo132056;rank=7 scaffold_19 . exon 71640 72116 . - . ID=Physo132056.7;Parent=Physo132056;constitutive=1;rank=7 scaffold_19 . CDS 72176 72874 . - 0 ID=Physo132056;Parent=Physo132056;rank=6 scaffold_19 . exon 72176 72874 . - . ID=Physo132056.6;Parent=Physo132056;constitutive=1;rank=6 scaffold_19 . CDS 72919 73248 . - 0 ID=Physo132056;Parent=Physo132056;rank=5 scaffold_19 . exon 72919 73248 . - . ID=Physo132056.5;Parent=Physo132056;constitutive=1;rank=5 scaffold_19 . CDS 73268 73681 . - 0 ID=Physo132056;Parent=Physo132056;rank=4 scaffold_19 . exon 73268 73681 . - . ID=Physo132056.4;Parent=Physo132056;constitutive=1;rank=4 scaffold_19 . CDS 73745 74649 . - 0 ID=Physo132056;Parent=Physo132056;rank=3 scaffold_19 . exon 73745 74649 . - . ID=Physo132056.3;Parent=Physo132056;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 74688 75281 . - 0 ID=Physo132056;Parent=Physo132056;rank=2 scaffold_19 . exon 74688 75281 . - . ID=Physo132056.2;Parent=Physo132056;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 75410 76358 . - 0 ID=Physo132056;Parent=Physo132056;rank=1 scaffold_19 . exon 75410 76358 . - . ID=Physo132056.1;Parent=Physo132056;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . repeat_region 88146 88154 . ? . description=dust scaffold_19 ensembl protein_coding_gene 82435 83511 . + . ID=Physo132058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190008;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 82435 83511 . + . ID=Physo132058;Parent=Physo132058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 82435 83511 . + 0 ID=Physo132058;Parent=Physo132058;rank=1 scaffold_19 . exon 82435 83511 . + . ID=Physo132058.1;Parent=Physo132058;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 89156 93126 . + . ID=Physo132059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190009;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 89156 93126 . + . ID=Physo132059;Parent=Physo132059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 89156 90157 . + 0 ID=Physo132059;Parent=Physo132059;rank=1 scaffold_19 . exon 89156 90157 . + . ID=Physo132059.1;Parent=Physo132059;constitutive=1;rank=1 scaffold_19 . CDS 90308 91357 . + 0 ID=Physo132059;Parent=Physo132059;rank=2 scaffold_19 . CDS 91457 91590 . + 0 ID=Physo132059;Parent=Physo132059;rank=3 scaffold_19 . CDS 91858 92394 . + 0 ID=Physo132059;Parent=Physo132059;rank=4 scaffold_19 . CDS 92472 93126 . + 0 ID=Physo132059;Parent=Physo132059;rank=5 scaffold_19 ensembl protein_coding_gene 79885 82308 . + . ID=Physo156437;biotype=protein_coding;external_name=C_scaffold_19000002;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 79885 82308 . + . ID=Physo156437;Parent=Physo156437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 79885 80126 . + 0 ID=Physo156437;Parent=Physo156437;rank=1 scaffold_19 . exon 79885 80126 . + . ID=Physo156437.1;Parent=Physo156437;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 80622 82308 . + 0 ID=Physo156437;Parent=Physo156437;rank=2 scaffold_19 . exon 80622 82308 . + . ID=Physo156437.2;Parent=Physo156437;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . biological_region 90933 90933 0.999 - . logic_name=eponine scaffold_19 . biological_region 99284 99285 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 98498 99070 . + . ID=Physo108601;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_190001;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 98498 99070 . + . ID=Physo108601;Parent=Physo108601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 98498 99070 . + . ID=Physo108601.1;Parent=Physo108601;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 98516 99070 . + 0 ID=Physo108601;Parent=Physo108601;rank=1 scaffold_19 . exon 90308 91357 . + . ID=Physo132059.2;Parent=Physo132059;constitutive=1;rank=2 scaffold_19 . exon 91457 91590 . + . ID=Physo132059.3;Parent=Physo132059;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . exon 91858 92394 . + . ID=Physo132059.4;Parent=Physo132059;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_19 . exon 92472 93126 . + . ID=Physo132059.5;Parent=Physo132059;constitutive=1;ensembl_phase=2;rank=5 scaffold_19 ensembl protein_coding_gene 94821 97108 . + . ID=Physo132060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190010;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 94821 97108 . + . ID=Physo132060;Parent=Physo132060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 94821 94844 . + 0 ID=Physo132060;Parent=Physo132060;rank=1 scaffold_19 . exon 94821 94844 . + . ID=Physo132060.1;Parent=Physo132060;constitutive=1;rank=1 scaffold_19 . CDS 95340 95765 . + 0 ID=Physo132060;Parent=Physo132060;rank=2 scaffold_19 . exon 95340 95765 . + . ID=Physo132060.2;Parent=Physo132060;constitutive=1;rank=2 scaffold_19 . CDS 95837 97108 . + 0 ID=Physo132060;Parent=Physo132060;rank=3 scaffold_19 . exon 95837 97108 . + . ID=Physo132060.3;Parent=Physo132060;constitutive=1;rank=3 scaffold_19 . repeat_region 105404 105411 . ? . description=dust scaffold_19 . repeat_region 105491 105498 . ? . description=dust scaffold_19 ensembl protein_coding_gene 100847 101248 . - . ID=Physo132062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190012;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 100847 101248 . - . ID=Physo132062;Parent=Physo132062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 100847 100863 . - 0 ID=Physo132062;Parent=Physo132062;rank=3 scaffold_19 . exon 100847 100863 . - . ID=Physo132062.3;Parent=Physo132062;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 100928 101126 . - 0 ID=Physo132062;Parent=Physo132062;rank=2 scaffold_19 . exon 100928 101126 . - . ID=Physo132062.2;Parent=Physo132062;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 101153 101248 . - 0 ID=Physo132062;Parent=Physo132062;rank=1 scaffold_19 . exon 101153 101248 . - . ID=Physo132062.1;Parent=Physo132062;constitutive=1;rank=1 scaffold_19 . biological_region 112481 112484 0.999 + . logic_name=eponine scaffold_19 . biological_region 112743 112743 0.999 + . logic_name=eponine scaffold_19 . repeat_region 112775 112800 . ? . description=trf scaffold_19 . repeat_region 112869 112945 . ? . description=trf scaffold_19 . repeat_region 114170 114205 . ? . description=trf scaffold_19 . biological_region 115280 115286 0.999 + . logic_name=eponine scaffold_19 . biological_region 115380 115384 0.999 - . logic_name=eponine scaffold_19 . biological_region 115832 115833 0.999 - . logic_name=eponine scaffold_19 . biological_region 116871 116872 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 109828 110340 . - . ID=Physo132063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190013;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 109828 110340 . - . ID=Physo132063;Parent=Physo132063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 109828 110253 . - 0 ID=Physo132063;Parent=Physo132063;rank=2 scaffold_19 . exon 109828 110253 . - . ID=Physo132063.2;Parent=Physo132063;constitutive=1;rank=2 scaffold_19 . CDS 110284 110340 . - 0 ID=Physo132063;Parent=Physo132063;rank=1 scaffold_19 . exon 110284 110340 . - . ID=Physo132063.1;Parent=Physo132063;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 111144 111578 . - . ID=Physo132064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190014;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 111144 111578 . - . ID=Physo132064;Parent=Physo132064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 111144 111578 . - 0 ID=Physo132064;Parent=Physo132064;rank=1 scaffold_19 . exon 111144 111578 . - . ID=Physo132064.1;Parent=Physo132064;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 114268 114729 . - . ID=Physo132065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190015;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 114268 114729 . - . ID=Physo132065;Parent=Physo132065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 114268 114729 . - 0 ID=Physo132065;Parent=Physo132065;rank=1 scaffold_19 . exon 114268 114729 . - . ID=Physo132065.1;Parent=Physo132065;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 115232 115795 . - . ID=Physo132066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190016;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 115232 115795 . - . ID=Physo132066;Parent=Physo132066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 115232 115795 . - 0 ID=Physo132066;Parent=Physo132066;rank=1 scaffold_19 . exon 115232 115795 . - . ID=Physo132066.1;Parent=Physo132066;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 116189 116659 . - . ID=Physo132067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190017;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 116189 116659 . - . ID=Physo132067;Parent=Physo132067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 116189 116659 . - 0 ID=Physo132067;Parent=Physo132067;rank=1 scaffold_19 . exon 116189 116659 . - . ID=Physo132067.1;Parent=Physo132067;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 117697 119421 . + . ID=Physo132068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190018;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 117697 119421 . + . ID=Physo132068;Parent=Physo132068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 117697 119421 . + 0 ID=Physo132068;Parent=Physo132068;rank=1 scaffold_19 . exon 117697 119421 . + . ID=Physo132068.1;Parent=Physo132068;constitutive=1;rank=1 scaffold_19 . repeat_region 124124 124133 . ? . description=dust scaffold_19 ensembl protein_coding_gene 125019 126673 . + . ID=Physo108602;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_190002;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 125019 126673 . + . ID=Physo108602;Parent=Physo108602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 125019 126362 . + 0 ID=Physo108602;Parent=Physo108602;rank=1 scaffold_19 . exon 125019 126673 . + . ID=Physo108602.1;Parent=Physo108602;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 119560 123900 . - . ID=Physo132069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190019;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 119560 123900 . - . ID=Physo132069;Parent=Physo132069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 119560 123900 . - 0 ID=Physo132069;Parent=Physo132069;rank=1 scaffold_19 . exon 119560 123900 . - . ID=Physo132069.1;Parent=Physo132069;constitutive=1;rank=1 scaffold_19 . repeat_region 133624 133664 . ? . description=trf scaffold_19 . repeat_region 135631 135654 . ? . description=trf scaffold_19 . biological_region 137805 137809 0.999 - . logic_name=eponine scaffold_19 . biological_region 137861 137862 0.999 + . logic_name=eponine scaffold_19 . biological_region 138902 138903 0.999 + . logic_name=eponine scaffold_19 . biological_region 139113 139115 0.999 - . logic_name=eponine scaffold_19 . biological_region 139200 139205 0.999 + . logic_name=eponine scaffold_19 . biological_region 139219 139224 0.999 - . logic_name=eponine scaffold_19 . biological_region 139273 139279 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 132722 133557 . - . ID=Physo132071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190021;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 132722 133557 . - . ID=Physo132071;Parent=Physo132071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 132722 133557 . - . ID=Physo132071.1;Parent=Physo132071;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_19 . CDS 132913 133557 . - 0 ID=Physo132071;Parent=Physo132071;rank=1 scaffold_19 ensembl protein_coding_gene 134207 135297 . - . ID=Physo132072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190022;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 134207 135297 . - . ID=Physo132072;Parent=Physo132072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 134207 135010 . - 0 ID=Physo132072;Parent=Physo132072;rank=2 scaffold_19 . exon 134207 135010 . - . ID=Physo132072.2;Parent=Physo132072;constitutive=1;rank=2 scaffold_19 . CDS 135088 135297 . - 0 ID=Physo132072;Parent=Physo132072;rank=1 scaffold_19 . exon 135088 135297 . - . ID=Physo132072.1;Parent=Physo132072;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 135563 136891 . + . ID=Physo132073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190023;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 135563 136891 . + . ID=Physo132073;Parent=Physo132073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 135563 136891 . + . ID=Physo132073.1;Parent=Physo132073;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 136406 136891 . + 0 ID=Physo132073;Parent=Physo132073;rank=1 scaffold_19 ensembl protein_coding_gene 137650 138422 . + . ID=Physo132074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190024;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 137650 138422 . + . ID=Physo132074;Parent=Physo132074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 137650 138049 . + . ID=Physo132074.1;Parent=Physo132074;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_19 . CDS 137679 138049 . + 0 ID=Physo132074;Parent=Physo132074;rank=1 scaffold_19 . CDS 138137 138422 . + 0 ID=Physo132074;Parent=Physo132074;rank=2 scaffold_19 . exon 138137 138422 . + . ID=Physo132074.2;Parent=Physo132074;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 ensembl protein_coding_gene 138411 140684 . - . ID=Physo132075;biotype=protein_coding;description=Cell 5A endo-1%2C4-betaglucanase [Source:UniProtKB/TrEMBL%3BAcc:A1YT24];external_name=EGL-V.9;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 138411 140684 . - . ID=Physo132075;Parent=Physo132075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 138411 140684 . - . ID=Physo132075.1;Parent=Physo132075;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_19 . CDS 138765 140684 . - 0 ID=Physo132075;Parent=Physo132075;rank=1 scaffold_19 . biological_region 150910 150911 0.999 + . logic_name=eponine scaffold_19 . repeat_region 151317 151337 . ? . description=trf scaffold_19 . biological_region 152147 152151 0.999 + . logic_name=eponine scaffold_19 . biological_region 152166 152171 0.999 + . logic_name=eponine scaffold_19 . biological_region 152205 152210 0.999 - . logic_name=eponine scaffold_19 . biological_region 152952 152958 0.999 + . logic_name=eponine scaffold_19 . repeat_region 153177 153217 . ? . description=trf scaffold_19 . repeat_region 156342 156361 . ? . description=dust scaffold_19 . repeat_region 156342 156361 . ? . description=trf scaffold_19 . repeat_region 158705 158712 . ? . description=dust scaffold_19 ensembl protein_coding_gene 156012 156221 . + . ID=Physo114319;biotype=protein_coding;external_name=estExt_Genewise1.C_190157;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 156012 156221 . + . ID=Physo114319;Parent=Physo114319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 156012 156221 . + . ID=Physo114319.1;Parent=Physo114319;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 156054 156221 . + 0 ID=Physo114319;Parent=Physo114319;rank=1 scaffold_19 ensembl protein_coding_gene 151562 153978 . - . ID=Physo132076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190026;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 151562 153978 . - . ID=Physo132076;Parent=Physo132076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 151562 151920 . - 0 ID=Physo132076;Parent=Physo132076;rank=5 scaffold_19 . exon 151562 151920 . - . ID=Physo132076.5;Parent=Physo132076;constitutive=1;ensembl_phase=1;rank=5 scaffold_19 . CDS 151940 152675 . - 0 ID=Physo132076;Parent=Physo132076;rank=4 scaffold_19 . exon 151940 152675 . - . ID=Physo132076.4;Parent=Physo132076;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_19 . CDS 152823 153130 . - 0 ID=Physo132076;Parent=Physo132076;rank=3 scaffold_19 . exon 152823 153130 . - . ID=Physo132076.3;Parent=Physo132076;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 153170 153664 . - 0 ID=Physo132076;Parent=Physo132076;rank=2 scaffold_19 . exon 153170 153664 . - . ID=Physo132076.2;Parent=Physo132076;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 153717 153978 . - 0 ID=Physo132076;Parent=Physo132076;rank=1 scaffold_19 . exon 153717 153978 . - . ID=Physo132076.1;Parent=Physo132076;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 165148 165839 . - . ID=Physo132077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190027;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 165148 165839 . - . ID=Physo132077;Parent=Physo132077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 165148 165738 . - 0 ID=Physo132077;Parent=Physo132077;rank=2 scaffold_19 . exon 165148 165738 . - . ID=Physo132077.2;Parent=Physo132077;constitutive=1;rank=2 scaffold_19 . CDS 165771 165839 . - 0 ID=Physo132077;Parent=Physo132077;rank=1 scaffold_19 . exon 165771 165839 . - . ID=Physo132077.1;Parent=Physo132077;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 166981 169348 . - . ID=Physo132078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190028;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 166981 169348 . - . ID=Physo132078;Parent=Physo132078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 166981 167423 . - . ID=Physo132078.3;Parent=Physo132078;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_19 . CDS 167395 167423 . - 0 ID=Physo132078;Parent=Physo132078;rank=3 scaffold_19 . CDS 167515 167653 . - 0 ID=Physo132078;Parent=Physo132078;rank=2 scaffold_19 . exon 167515 167653 . - . ID=Physo132078.2;Parent=Physo132078;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 167729 169348 . - 0 ID=Physo132078;Parent=Physo132078;rank=1 scaffold_19 . exon 167729 169348 . - . ID=Physo132078.1;Parent=Physo132078;constitutive=1;rank=1 scaffold_19 . repeat_region 169312 169320 . ? . description=dust scaffold_19 . repeat_region 169839 169846 . ? . description=dust scaffold_19 . repeat_region 170888 170895 . ? . description=dust scaffold_19 . repeat_region 171635 171642 . ? . description=dust scaffold_19 . biological_region 173153 173158 0.999 + . logic_name=eponine scaffold_19 . biological_region 173611 173615 0.999 - . logic_name=eponine scaffold_19 . biological_region 174201 174204 0.999 + . logic_name=eponine scaffold_19 . biological_region 174544 174544 0.999 + . logic_name=eponine scaffold_19 . biological_region 175223 175224 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 172129 176145 . - . ID=Physo156439;biotype=protein_coding;external_name=C_scaffold_19000004;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 172129 176145 . - . ID=Physo156439;Parent=Physo156439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 172129 172211 . - 0 ID=Physo156439;Parent=Physo156439;rank=6 scaffold_19 . exon 172129 172211 . - . ID=Physo156439.6;Parent=Physo156439;constitutive=1;ensembl_phase=1;rank=6 scaffold_19 . CDS 172319 172757 . - 0 ID=Physo156439;Parent=Physo156439;rank=5 scaffold_19 . exon 172319 172757 . - . ID=Physo156439.5;Parent=Physo156439;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_19 . CDS 173189 173394 . - 0 ID=Physo156439;Parent=Physo156439;rank=4 scaffold_19 . exon 173189 173394 . - . ID=Physo156439.4;Parent=Physo156439;constitutive=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 173533 174012 . - 0 ID=Physo156439;Parent=Physo156439;rank=3 scaffold_19 . exon 173533 174012 . - . ID=Physo156439.3;Parent=Physo156439;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 174144 174321 . - 0 ID=Physo156439;Parent=Physo156439;rank=2 scaffold_19 . exon 174144 174321 . - . ID=Physo156439.2;Parent=Physo156439;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 174358 176145 . - 0 ID=Physo156439;Parent=Physo156439;rank=1 scaffold_19 . exon 174358 176145 . - . ID=Physo156439.1;Parent=Physo156439;constitutive=1;rank=1 scaffold_19 . repeat_region 187230 187279 . ? . description=trf scaffold_19 ensembl protein_coding_gene 182581 183267 . + . ID=Physo132081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190031;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 182581 183267 . + . ID=Physo132081;Parent=Physo132081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 182581 182709 . + 0 ID=Physo132081;Parent=Physo132081;rank=1 scaffold_19 . exon 182581 182709 . + . ID=Physo132081.1;Parent=Physo132081;constitutive=1;rank=1 scaffold_19 . CDS 182856 183215 . + 0 ID=Physo132081;Parent=Physo132081;rank=2 scaffold_19 . exon 182856 183215 . + . ID=Physo132081.2;Parent=Physo132081;constitutive=1;rank=2 scaffold_19 . CDS 183256 183267 . + 0 ID=Physo132081;Parent=Physo132081;rank=3 scaffold_19 . exon 183256 183267 . + . ID=Physo132081.3;Parent=Physo132081;constitutive=1;rank=3 scaffold_19 ensembl protein_coding_gene 185804 187310 . + . ID=Physo132082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190032;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 185804 187310 . + . ID=Physo132082;Parent=Physo132082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 185804 185916 . + 0 ID=Physo132082;Parent=Physo132082;rank=1 scaffold_19 . exon 185804 185916 . + . ID=Physo132082.1;Parent=Physo132082;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 186045 186260 . + 0 ID=Physo132082;Parent=Physo132082;rank=2 scaffold_19 . exon 186045 186260 . + . ID=Physo132082.2;Parent=Physo132082;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_19 . CDS 186379 187015 . + 0 ID=Physo132082;Parent=Physo132082;rank=3 scaffold_19 . exon 186379 187015 . + . ID=Physo132082.3;Parent=Physo132082;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 187038 187310 . + 0 ID=Physo132082;Parent=Physo132082;rank=4 scaffold_19 . exon 187038 187310 . + . ID=Physo132082.4;Parent=Physo132082;constitutive=1;rank=4 scaffold_19 ensembl protein_coding_gene 187824 192003 . - . ID=Physo132083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190033;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 187824 192003 . - . ID=Physo132083;Parent=Physo132083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 187824 189198 . - . ID=Physo132083.5;Parent=Physo132083;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_19 . CDS 188066 189198 . - 0 ID=Physo132083;Parent=Physo132083;rank=5 scaffold_19 . CDS 189245 189731 . - 0 ID=Physo132083;Parent=Physo132083;rank=4 scaffold_19 . CDS 189771 190266 . - 0 ID=Physo132083;Parent=Physo132083;rank=3 scaffold_19 . CDS 190350 190544 . - 0 ID=Physo132083;Parent=Physo132083;rank=2 scaffold_19 . CDS 190577 192003 . - 0 ID=Physo132083;Parent=Physo132083;rank=1 scaffold_19 ensembl protein_coding_gene 179655 181656 . - . ID=Physo156440;biotype=protein_coding;external_name=C_scaffold_19000005;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 179655 181656 . - . ID=Physo156440;Parent=Physo156440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 179655 179763 . - 0 ID=Physo156440;Parent=Physo156440;rank=5 scaffold_19 . exon 179655 179763 . - . ID=Physo156440.5;Parent=Physo156440;constitutive=1;ensembl_phase=2;rank=5 scaffold_19 . CDS 179963 180697 . - 0 ID=Physo156440;Parent=Physo156440;rank=4 scaffold_19 . exon 179963 180697 . - . ID=Physo156440.4;Parent=Physo156440;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_19 . CDS 180743 181049 . - 0 ID=Physo156440;Parent=Physo156440;rank=3 scaffold_19 . exon 180743 181049 . - . ID=Physo156440.3;Parent=Physo156440;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_19 . CDS 181146 181392 . - 0 ID=Physo156440;Parent=Physo156440;rank=2 scaffold_19 . exon 181146 181392 . - . ID=Physo156440.2;Parent=Physo156440;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 181462 181656 . - 0 ID=Physo156440;Parent=Physo156440;rank=1 scaffold_19 . exon 181462 181656 . - . ID=Physo156440.1;Parent=Physo156440;constitutive=1;rank=1 scaffold_19 . biological_region 191380 191382 0.999 - . logic_name=eponine scaffold_19 . biological_region 192129 192131 0.999 + . logic_name=eponine scaffold_19 . biological_region 193825 193829 0.999 - . logic_name=eponine scaffold_19 . biological_region 194309 194313 0.999 + . logic_name=eponine scaffold_19 . biological_region 194338 194339 0.999 + . logic_name=eponine scaffold_19 . biological_region 194439 194441 0.999 - . logic_name=eponine scaffold_19 . biological_region 195469 195471 0.999 - . logic_name=eponine scaffold_19 . repeat_region 196416 196423 . ? . description=dust scaffold_19 . biological_region 198080 198083 0.999 + . logic_name=eponine scaffold_19 . biological_region 198113 198115 0.999 + . logic_name=eponine scaffold_19 . biological_region 198490 198496 0.999 - . logic_name=eponine scaffold_19 . biological_region 198569 198575 0.999 + . logic_name=eponine scaffold_19 . biological_region 198832 198838 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 197843 198958 . + . ID=Physo108603;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_190003;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 197843 198958 . + . ID=Physo108603;Parent=Physo108603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 197843 197859 . + 0 ID=Physo108603;Parent=Physo108603;rank=1 scaffold_19 . exon 197843 197859 . + . ID=Physo108603.1;Parent=Physo108603;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 198130 198958 . + 0 ID=Physo108603;Parent=Physo108603;rank=2 scaffold_19 . exon 198130 198958 . + . ID=Physo108603.2;Parent=Physo108603;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . exon 189245 189731 . - . ID=Physo132083.4;Parent=Physo132083;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_19 . exon 189771 190266 . - . ID=Physo132083.3;Parent=Physo132083;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . exon 190350 190544 . - . ID=Physo132083.2;Parent=Physo132083;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_19 . exon 190577 192003 . - . ID=Physo132083.1;Parent=Physo132083;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 192438 194616 . - . ID=Physo132084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190034;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 192438 194616 . - . ID=Physo132084;Parent=Physo132084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 192438 192509 . - 0 ID=Physo132084;Parent=Physo132084;rank=3 scaffold_19 . exon 192438 192509 . - . ID=Physo132084.3;Parent=Physo132084;constitutive=1;rank=3 scaffold_19 . CDS 192551 193585 . - 0 ID=Physo132084;Parent=Physo132084;rank=2 scaffold_19 . exon 192551 193585 . - . ID=Physo132084.2;Parent=Physo132084;constitutive=1;rank=2 scaffold_19 . CDS 193684 194616 . - 0 ID=Physo132084;Parent=Physo132084;rank=1 scaffold_19 . exon 193684 194616 . - . ID=Physo132084.1;Parent=Physo132084;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 199090 201463 . - . ID=Physo132086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190036;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 199090 201463 . - . ID=Physo132086;Parent=Physo132086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 199090 199187 . - 0 ID=Physo132086;Parent=Physo132086;rank=2 scaffold_19 . exon 199090 199187 . - . ID=Physo132086.2;Parent=Physo132086;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 199249 201463 . - 0 ID=Physo132086;Parent=Physo132086;rank=1 scaffold_19 . repeat_region 199654 199714 . ? . description=trf scaffold_19 . repeat_region 199654 199721 . + . description=(TCG)n scaffold_19 . repeat_region 199656 199711 . ? . description=trf scaffold_19 . repeat_region 200003 200048 . ? . description=trf scaffold_19 . repeat_region 201353 201404 . ? . description=trf scaffold_19 . repeat_region 201358 201419 . ? . description=trf scaffold_19 . repeat_region 208062 208139 . ? . description=trf scaffold_19 . repeat_region 208062 208152 . ? . description=trf scaffold_19 . exon 199249 201463 . - . ID=Physo132086.1;Parent=Physo132086;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 201628 202068 . - . ID=Physo132087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190037;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 201628 202068 . - . ID=Physo132087;Parent=Physo132087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 201628 202068 . - 0 ID=Physo132087;Parent=Physo132087;rank=1 scaffold_19 . exon 201628 202068 . - . ID=Physo132087.1;Parent=Physo132087;constitutive=1;rank=1 scaffold_19 . biological_region 214641 214645 0.999 - . logic_name=eponine scaffold_19 . biological_region 214729 214729 0.999 + . logic_name=eponine scaffold_19 . biological_region 216831 216836 0.999 - . logic_name=eponine scaffold_19 . biological_region 217153 217155 0.999 + . logic_name=eponine scaffold_19 . biological_region 217294 217296 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 214356 215894 . - . ID=Physo132088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190038;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 214356 215894 . - . ID=Physo132088;Parent=Physo132088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 214356 215894 . - 0 ID=Physo132088;Parent=Physo132088;rank=1 scaffold_19 . exon 214356 215894 . - . ID=Physo132088.1;Parent=Physo132088;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 216443 219085 . + . ID=Physo132089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190039;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 216443 219085 . + . ID=Physo132089;Parent=Physo132089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 216443 216520 . + 0 ID=Physo132089;Parent=Physo132089;rank=1 scaffold_19 . exon 216443 216520 . + . ID=Physo132089.1;Parent=Physo132089;constitutive=1;rank=1 scaffold_19 . CDS 216597 218984 . + 0 ID=Physo132089;Parent=Physo132089;rank=2 scaffold_19 . exon 216597 219085 . + . ID=Physo132089.2;Parent=Physo132089;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_19 . repeat_region 220880 220887 . ? . description=dust scaffold_19 . repeat_region 221256 221288 . ? . description=trf scaffold_19 . repeat_region 223591 223601 . ? . description=dust scaffold_19 . repeat_region 228669 228708 . ? . description=trf scaffold_19 . repeat_region 228669 228713 . ? . description=trf scaffold_19 . repeat_region 228946 228982 . ? . description=trf scaffold_19 ensembl protein_coding_gene 223623 224097 . - . ID=Physo108604;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84XT7];external_name=estExt_fgenesh1_pm.C_190004;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 223623 224097 . - . ID=Physo108604;Parent=Physo108604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 223623 224097 . - . ID=Physo108604.1;Parent=Physo108604;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_19 . CDS 223765 224097 . - 0 ID=Physo108604;Parent=Physo108604;rank=1 scaffold_19 ensembl protein_coding_gene 220931 223093 . + . ID=Physo132090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190040;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 220931 223093 . + . ID=Physo132090;Parent=Physo132090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 220931 223093 . + 0 ID=Physo132090;Parent=Physo132090;rank=1 scaffold_19 . exon 220931 223093 . + . ID=Physo132090.1;Parent=Physo132090;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 224642 226139 . + . ID=Physo132092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190042;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 224642 226139 . + . ID=Physo132092;Parent=Physo132092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 224642 226139 . + . ID=Physo132092.1;Parent=Physo132092;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 224964 226139 . + 0 ID=Physo132092;Parent=Physo132092;rank=1 scaffold_19 . biological_region 229889 229893 0.999 + . logic_name=eponine scaffold_19 . biological_region 230503 230511 0.999 - . logic_name=eponine scaffold_19 . biological_region 231497 231498 0.999 - . logic_name=eponine scaffold_19 . biological_region 232919 232922 0.999 - . logic_name=eponine scaffold_19 . biological_region 234390 234392 0.999 - . logic_name=eponine scaffold_19 . biological_region 234444 234448 0.999 + . logic_name=eponine scaffold_19 . biological_region 234505 234508 0.999 + . logic_name=eponine scaffold_19 . biological_region 235170 235170 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 232609 233988 . - . ID=Physo114335;biotype=protein_coding;external_name=estExt_Genewise1.C_190173;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 232609 233988 . - . ID=Physo114335;Parent=Physo114335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 232609 233988 . - . ID=Physo114335.1;Parent=Physo114335;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 232687 233949 . - 0 ID=Physo114335;Parent=Physo114335;rank=1 scaffold_19 ensembl protein_coding_gene 230992 232282 . + . ID=Physo132093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190043;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 230992 232282 . + . ID=Physo132093;Parent=Physo132093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 230992 231734 . + . ID=Physo132093.1;Parent=Physo132093;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 231216 231734 . + 0 ID=Physo132093;Parent=Physo132093;rank=1 scaffold_19 . CDS 231825 232004 . + 0 ID=Physo132093;Parent=Physo132093;rank=2 scaffold_19 . exon 231825 232004 . + . ID=Physo132093.2;Parent=Physo132093;constitutive=1;rank=2 scaffold_19 . CDS 232070 232177 . + 0 ID=Physo132093;Parent=Physo132093;rank=3 scaffold_19 . exon 232070 232282 . + . ID=Physo132093.3;Parent=Physo132093;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_19 ensembl protein_coding_gene 234235 234711 . - . ID=Physo132095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190045;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 234235 234711 . - . ID=Physo132095;Parent=Physo132095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 234235 234711 . - 0 ID=Physo132095;Parent=Physo132095;rank=1 scaffold_19 . exon 234235 234711 . - . ID=Physo132095.1;Parent=Physo132095;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 235006 237141 . - . ID=Physo132096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190046;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 235006 237141 . - . ID=Physo132096;Parent=Physo132096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 235006 237141 . - 0 ID=Physo132096;Parent=Physo132096;rank=1 scaffold_19 . exon 235006 237141 . - . ID=Physo132096.1;Parent=Physo132096;constitutive=1;rank=1 scaffold_19 . repeat_region 241669 241700 . ? . description=dust scaffold_19 ensembl protein_coding_gene 241289 241654 . + . ID=Physo132097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190047;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 241289 241654 . + . ID=Physo132097;Parent=Physo132097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 241289 241654 . + 0 ID=Physo132097;Parent=Physo132097;rank=1 scaffold_19 . exon 241289 241654 . + . ID=Physo132097.1;Parent=Physo132097;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 242253 242636 . + . ID=Physo132098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190048;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 242253 242636 . + . ID=Physo132098;Parent=Physo132098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 242253 242636 . + 0 ID=Physo132098;Parent=Physo132098;rank=1 scaffold_19 . exon 242253 242636 . + . ID=Physo132098.1;Parent=Physo132098;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 243139 243516 . + . ID=Physo132099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190049;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 243139 243516 . + . ID=Physo132099;Parent=Physo132099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 243139 243516 . + 0 ID=Physo132099;Parent=Physo132099;rank=1 scaffold_19 . exon 243139 243516 . + . ID=Physo132099.1;Parent=Physo132099;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 244176 247105 . - . ID=Physo132100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190050;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 244176 247105 . - . ID=Physo132100;Parent=Physo132100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 244176 244235 . - 0 ID=Physo132100;Parent=Physo132100;rank=4 scaffold_19 . exon 244176 244235 . - . ID=Physo132100.4;Parent=Physo132100;constitutive=1;rank=4 scaffold_19 . CDS 244394 244942 . - 0 ID=Physo132100;Parent=Physo132100;rank=3 scaffold_19 . exon 244394 244942 . - . ID=Physo132100.3;Parent=Physo132100;constitutive=1;rank=3 scaffold_19 . CDS 244994 245280 . - 0 ID=Physo132100;Parent=Physo132100;rank=2 scaffold_19 . exon 244994 245280 . - . ID=Physo132100.2;Parent=Physo132100;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 245461 247105 . - 0 ID=Physo132100;Parent=Physo132100;rank=1 scaffold_19 . exon 245461 247105 . - . ID=Physo132100.1;Parent=Physo132100;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 248018 253301 . + . ID=Physo132101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190051;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 248018 253301 . + . ID=Physo132101;Parent=Physo132101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 248018 248814 . + 0 ID=Physo132101;Parent=Physo132101;rank=1 scaffold_19 . exon 248018 248814 . + . ID=Physo132101.1;Parent=Physo132101;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 249121 249718 . + 0 ID=Physo132101;Parent=Physo132101;rank=2 scaffold_19 . CDS 249741 250006 . + 0 ID=Physo132101;Parent=Physo132101;rank=3 scaffold_19 . CDS 250054 250185 . + 0 ID=Physo132101;Parent=Physo132101;rank=4 scaffold_19 . CDS 250323 250463 . + 0 ID=Physo132101;Parent=Physo132101;rank=5 scaffold_19 . CDS 250527 250572 . + 0 ID=Physo132101;Parent=Physo132101;rank=6 scaffold_19 . CDS 250634 250762 . + 0 ID=Physo132101;Parent=Physo132101;rank=7 scaffold_19 . CDS 250797 251056 . + 0 ID=Physo132101;Parent=Physo132101;rank=8 scaffold_19 . CDS 251209 251473 . + 0 ID=Physo132101;Parent=Physo132101;rank=9 scaffold_19 . CDS 251712 252463 . + 0 ID=Physo132101;Parent=Physo132101;rank=10 scaffold_19 . CDS 252589 252804 . + 0 ID=Physo132101;Parent=Physo132101;rank=11 scaffold_19 . CDS 253082 253301 . + 0 ID=Physo132101;Parent=Physo132101;rank=12 scaffold_19 . biological_region 249499 249503 0.999 - . logic_name=eponine scaffold_19 . biological_region 250015 250017 0.999 + . logic_name=eponine scaffold_19 . biological_region 250077 250083 0.999 - . logic_name=eponine scaffold_19 . biological_region 250409 250415 0.999 + . logic_name=eponine scaffold_19 . repeat_region 251024 251328 . + . description=GypsyPi-1c_I-int scaffold_19 . biological_region 251630 251630 0.999 - . logic_name=eponine scaffold_19 . biological_region 251676 251682 0.999 - . logic_name=eponine scaffold_19 . biological_region 251722 251724 0.999 - . logic_name=eponine scaffold_19 . biological_region 251733 251737 0.999 + . logic_name=eponine scaffold_19 . biological_region 251746 251750 0.999 + . logic_name=eponine scaffold_19 . biological_region 251844 251845 0.999 + . logic_name=eponine scaffold_19 . biological_region 253127 253129 0.999 - . logic_name=eponine scaffold_19 . repeat_region 253306 253346 . ? . description=trf scaffold_19 . repeat_region 253507 253547 . ? . description=trf scaffold_19 . biological_region 253724 253728 0.999 + . logic_name=eponine scaffold_19 . biological_region 253892 253894 0.999 + . logic_name=eponine scaffold_19 . biological_region 254259 254263 0.999 + . logic_name=eponine scaffold_19 . biological_region 254266 254268 0.999 - . logic_name=eponine scaffold_19 . biological_region 254314 254321 0.999 - . logic_name=eponine scaffold_19 . biological_region 254555 254558 0.999 - . logic_name=eponine scaffold_19 . biological_region 254611 254612 0.999 + . logic_name=eponine scaffold_19 . repeat_region 256969 256988 . ? . description=trf scaffold_19 . biological_region 257477 257480 0.999 + . logic_name=eponine scaffold_19 . biological_region 257485 257486 0.999 - . logic_name=eponine scaffold_19 . biological_region 257522 257527 0.999 + . logic_name=eponine scaffold_19 . biological_region 257568 257573 0.999 - . logic_name=eponine scaffold_19 . biological_region 257617 257620 0.999 - . logic_name=eponine scaffold_19 . biological_region 257651 257653 0.999 - . logic_name=eponine scaffold_19 . biological_region 258084 258089 0.999 + . logic_name=eponine scaffold_19 . biological_region 258643 258648 0.999 + . logic_name=eponine scaffold_19 . biological_region 258676 258676 0.999 + . logic_name=eponine scaffold_19 . biological_region 258704 258708 0.999 + . logic_name=eponine scaffold_19 . biological_region 258719 258719 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 253954 254484 . - . ID=Physo114347;biotype=protein_coding;external_name=estExt_Genewise1.C_190185;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 253954 254484 . - . ID=Physo114347;Parent=Physo114347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 253954 254427 . - 0 ID=Physo114347;Parent=Physo114347;rank=1 scaffold_19 . exon 253954 254484 . - . ID=Physo114347.1;Parent=Physo114347;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . exon 249121 249718 . + . ID=Physo132101.2;Parent=Physo132101;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . exon 249741 250006 . + . ID=Physo132101.3;Parent=Physo132101;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . exon 250054 250185 . + . ID=Physo132101.4;Parent=Physo132101;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_19 . exon 250323 250463 . + . ID=Physo132101.5;Parent=Physo132101;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_19 . exon 250527 250572 . + . ID=Physo132101.6;Parent=Physo132101;constitutive=1;ensembl_phase=2;rank=6 scaffold_19 . exon 250634 250762 . + . ID=Physo132101.7;Parent=Physo132101;constitutive=1;rank=7 scaffold_19 . exon 250797 251056 . + . ID=Physo132101.8;Parent=Physo132101;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_19 . exon 251209 251473 . + . ID=Physo132101.9;Parent=Physo132101;constitutive=1;ensembl_phase=2;rank=9 scaffold_19 . exon 251712 252463 . + . ID=Physo132101.10;Parent=Physo132101;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_19 . exon 252589 252804 . + . ID=Physo132101.11;Parent=Physo132101;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_19 . exon 253082 253301 . + . ID=Physo132101.12;Parent=Physo132101;constitutive=1;ensembl_phase=2;rank=12 scaffold_19 ensembl protein_coding_gene 256130 259449 . - . ID=Physo132103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190053;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 256130 259449 . - . ID=Physo132103;Parent=Physo132103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 256130 256913 . - 0 ID=Physo132103;Parent=Physo132103;rank=5 scaffold_19 . exon 256130 256913 . - . ID=Physo132103.5;Parent=Physo132103;constitutive=1;ensembl_phase=2;rank=5 scaffold_19 . CDS 257186 257680 . - 0 ID=Physo132103;Parent=Physo132103;rank=4 scaffold_19 . exon 257186 257680 . - . ID=Physo132103.4;Parent=Physo132103;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_19 . CDS 257712 258623 . - 0 ID=Physo132103;Parent=Physo132103;rank=3 scaffold_19 . exon 257712 258623 . - . ID=Physo132103.3;Parent=Physo132103;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_19 . CDS 258828 259323 . - 0 ID=Physo132103;Parent=Physo132103;rank=2 scaffold_19 . exon 258828 259323 . - . ID=Physo132103.2;Parent=Physo132103;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_19 . CDS 259395 259449 . - 0 ID=Physo132103;Parent=Physo132103;rank=1 scaffold_19 . repeat_region 265099 265132 . ? . description=dust scaffold_19 . repeat_region 265454 265461 . ? . description=dust scaffold_19 ensembl protein_coding_gene 261624 261895 . - . ID=Physo114352;biotype=protein_coding;external_name=estExt_Genewise1.C_190190;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 261624 261895 . - . ID=Physo114352;Parent=Physo114352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 261624 261796 . - 0 ID=Physo114352;Parent=Physo114352;rank=2 scaffold_19 . exon 261624 261796 . - . ID=Physo114352.2;Parent=Physo114352;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 261826 261856 . - 0 ID=Physo114352;Parent=Physo114352;rank=1 scaffold_19 . exon 261826 261895 . - . ID=Physo114352.1;Parent=Physo114352;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_19 . exon 259395 259449 . - . ID=Physo132103.1;Parent=Physo132103;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 265004 265426 . - . ID=Physo132104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190054;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 265004 265426 . - . ID=Physo132104;Parent=Physo132104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 265004 265426 . - 0 ID=Physo132104;Parent=Physo132104;rank=1 scaffold_19 . exon 265004 265426 . - . ID=Physo132104.1;Parent=Physo132104;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 267182 268004 . + . ID=Physo132105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190055;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 267182 268004 . + . ID=Physo132105;Parent=Physo132105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 267182 267682 . + 0 ID=Physo132105;Parent=Physo132105;rank=1 scaffold_19 . exon 267182 267813 . + . ID=Physo132105.1;Parent=Physo132105;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_19 . exon 267885 268004 . + . ID=Physo132105.2;Parent=Physo132105;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_19 . biological_region 269764 269766 0.999 + . logic_name=eponine scaffold_19 . repeat_region 269801 269911 . ? . description=trf scaffold_19 . repeat_region 269801 269911 . ? . description=trf scaffold_19 . repeat_region 269933 269983 . ? . description=trf scaffold_19 . biological_region 270080 270082 0.999 + . logic_name=eponine scaffold_19 . biological_region 272986 272990 0.999 + . logic_name=eponine scaffold_19 . repeat_region 277633 277732 . ? . description=trf scaffold_19 ensembl protein_coding_gene 273225 273488 . - . ID=Physo114363;biotype=protein_coding;external_name=estExt_Genewise1.C_190201;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 273225 273488 . - . ID=Physo114363;Parent=Physo114363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 273225 273449 . - 0 ID=Physo114363;Parent=Physo114363;rank=1 scaffold_19 . exon 273225 273488 . - . ID=Physo114363.1;Parent=Physo114363;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 269778 270501 . - . ID=Physo132106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190056;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 269778 270501 . - . ID=Physo132106;Parent=Physo132106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 269778 269835 . - 0 ID=Physo132106;Parent=Physo132106;rank=4 scaffold_19 . exon 269778 269835 . - . ID=Physo132106.4;Parent=Physo132106;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 269855 270174 . - 0 ID=Physo132106;Parent=Physo132106;rank=3 scaffold_19 . exon 269855 270174 . - . ID=Physo132106.3;Parent=Physo132106;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . CDS 270281 270343 . - 0 ID=Physo132106;Parent=Physo132106;rank=2 scaffold_19 . exon 270281 270343 . - . ID=Physo132106.2;Parent=Physo132106;constitutive=1;rank=2 scaffold_19 . CDS 270484 270501 . - 0 ID=Physo132106;Parent=Physo132106;rank=1 scaffold_19 . exon 270484 270501 . - . ID=Physo132106.1;Parent=Physo132106;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 271045 271710 . - . ID=Physo132107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190057;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 271045 271710 . - . ID=Physo132107;Parent=Physo132107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 271045 271569 . - 0 ID=Physo132107;Parent=Physo132107;rank=2 scaffold_19 . exon 271045 271569 . - . ID=Physo132107.2;Parent=Physo132107;constitutive=1;rank=2 scaffold_19 . CDS 271600 271710 . - 0 ID=Physo132107;Parent=Physo132107;rank=1 scaffold_19 . exon 271600 271710 . - . ID=Physo132107.1;Parent=Physo132107;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 276154 277033 . - . ID=Physo132108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190058;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 276154 277033 . - . ID=Physo132108;Parent=Physo132108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 276154 276356 . - 0 ID=Physo132108;Parent=Physo132108;rank=2 scaffold_19 . exon 276154 276356 . - . ID=Physo132108.2;Parent=Physo132108;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 276394 277033 . - 0 ID=Physo132108;Parent=Physo132108;rank=1 scaffold_19 . exon 276394 277033 . - . ID=Physo132108.1;Parent=Physo132108;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . repeat_region 278939 278946 . ? . description=dust scaffold_19 . repeat_region 283207 283219 . ? . description=dust scaffold_19 . repeat_region 284820 284869 . ? . description=dust scaffold_19 . repeat_region 284981 285014 . ? . description=dust scaffold_19 . repeat_region 285336 285343 . ? . description=dust scaffold_19 . repeat_region 286007 286056 . ? . description=dust scaffold_19 . repeat_region 287990 289255 . ? . description=dust scaffold_19 ensembl protein_coding_gene 280152 281839 . + . ID=Physo132109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190059;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 280152 281839 . + . ID=Physo132109;Parent=Physo132109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 280152 280863 . + 0 ID=Physo132109;Parent=Physo132109;rank=1 scaffold_19 . exon 280152 280863 . + . ID=Physo132109.1;Parent=Physo132109;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 280908 281839 . + 0 ID=Physo132109;Parent=Physo132109;rank=2 scaffold_19 . exon 280908 281839 . + . ID=Physo132109.2;Parent=Physo132109;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 ensembl protein_coding_gene 283450 285315 . + . ID=Physo132110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190060;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 283450 285315 . + . ID=Physo132110;Parent=Physo132110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 283450 284472 . + 0 ID=Physo132110;Parent=Physo132110;rank=1 scaffold_19 . exon 283450 284472 . + . ID=Physo132110.1;Parent=Physo132110;constitutive=1;rank=1 scaffold_19 . CDS 284660 284815 . + 0 ID=Physo132110;Parent=Physo132110;rank=2 scaffold_19 . exon 284660 284815 . + . ID=Physo132110.2;Parent=Physo132110;constitutive=1;rank=2 scaffold_19 . CDS 284968 285315 . + 0 ID=Physo132110;Parent=Physo132110;rank=3 scaffold_19 . exon 284968 285315 . + . ID=Physo132110.3;Parent=Physo132110;constitutive=1;rank=3 scaffold_19 . biological_region 290635 290638 0.999 + . logic_name=eponine scaffold_19 . biological_region 290752 290758 0.999 + . logic_name=eponine scaffold_19 . biological_region 290758 290760 0.999 - . logic_name=eponine scaffold_19 . biological_region 291078 291080 0.999 - . logic_name=eponine scaffold_19 . biological_region 291239 291240 0.999 + . logic_name=eponine scaffold_19 . biological_region 292115 292117 0.999 - . logic_name=eponine scaffold_19 . biological_region 293260 293263 0.999 + . logic_name=eponine scaffold_19 . biological_region 293447 293452 0.999 - . logic_name=eponine scaffold_19 . biological_region 293876 293880 0.999 - . logic_name=eponine scaffold_19 . biological_region 293901 293905 0.999 + . logic_name=eponine scaffold_19 . biological_region 294255 294257 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 289813 290163 . + . ID=Physo114164;biotype=protein_coding;external_name=estExt_Genewise1.C_190002;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 289813 290163 . + . ID=Physo114164;Parent=Physo114164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 289813 290163 . + . ID=Physo114164.1;Parent=Physo114164;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 289858 290163 . + 0 ID=Physo114164;Parent=Physo114164;rank=1 scaffold_19 ensembl protein_coding_gene 292144 292527 . + . ID=Physo132112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190062;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 292144 292527 . + . ID=Physo132112;Parent=Physo132112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 292144 292527 . + 0 ID=Physo132112;Parent=Physo132112;rank=1 scaffold_19 . exon 292144 292527 . + . ID=Physo132112.1;Parent=Physo132112;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 292719 294341 . - . ID=Physo132113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190063;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 292719 294341 . - . ID=Physo132113;Parent=Physo132113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 292719 294341 . - 0 ID=Physo132113;Parent=Physo132113;rank=1 scaffold_19 . exon 292719 294341 . - . ID=Physo132113.1;Parent=Physo132113;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 294992 295993 . + . ID=Physo132114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190064;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 294992 295993 . + . ID=Physo132114;Parent=Physo132114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 294992 295993 . + 0 ID=Physo132114;Parent=Physo132114;rank=1 scaffold_19 . exon 294992 295993 . + . ID=Physo132114.1;Parent=Physo132114;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 297485 299179 . + . ID=Physo132115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190065;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 297485 299179 . + . ID=Physo132115;Parent=Physo132115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 297485 299179 . + 0 ID=Physo132115;Parent=Physo132115;rank=1 scaffold_19 . exon 297485 299179 . + . ID=Physo132115.1;Parent=Physo132115;constitutive=1;rank=1 scaffold_19 . repeat_region 301316 301356 . ? . description=trf scaffold_19 . repeat_region 305567 305581 . ? . description=dust scaffold_19 . repeat_region 306298 306396 . ? . description=trf scaffold_19 . repeat_region 306565 306670 . ? . description=trf scaffold_19 . repeat_region 306585 306688 . ? . description=trf scaffold_19 . repeat_region 306792 307087 . ? . description=trf scaffold_19 . repeat_region 306845 306925 . ? . description=trf scaffold_19 . repeat_region 306860 306913 . ? . description=trf scaffold_19 . repeat_region 306942 307013 . ? . description=trf scaffold_19 . repeat_region 306986 307037 . ? . description=trf scaffold_19 . repeat_region 307317 307369 . ? . description=dust scaffold_19 . repeat_region 307441 307571 . ? . description=trf scaffold_19 . repeat_region 307457 307571 . ? . description=trf scaffold_19 . repeat_region 307492 307598 . ? . description=trf scaffold_19 . repeat_region 307723 307843 . ? . description=trf scaffold_19 ensembl protein_coding_gene 299379 300966 . - . ID=Physo132116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190066;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 299379 300966 . - . ID=Physo132116;Parent=Physo132116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 299379 300437 . - 0 ID=Physo132116;Parent=Physo132116;rank=5 scaffold_19 . exon 299379 300437 . - . ID=Physo132116.5;Parent=Physo132116;constitutive=1;rank=5 scaffold_19 . CDS 300517 300554 . - 0 ID=Physo132116;Parent=Physo132116;rank=4 scaffold_19 . exon 300517 300554 . - . ID=Physo132116.4;Parent=Physo132116;constitutive=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 300623 300680 . - 0 ID=Physo132116;Parent=Physo132116;rank=3 scaffold_19 . exon 300623 300680 . - . ID=Physo132116.3;Parent=Physo132116;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_19 . CDS 300745 300807 . - 0 ID=Physo132116;Parent=Physo132116;rank=2 scaffold_19 . exon 300745 300807 . - . ID=Physo132116.2;Parent=Physo132116;constitutive=1;rank=2 scaffold_19 . CDS 300937 300966 . - 0 ID=Physo132116;Parent=Physo132116;rank=1 scaffold_19 . exon 300937 300966 . - . ID=Physo132116.1;Parent=Physo132116;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 301127 304468 . - . ID=Physo132117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190067;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 301127 304468 . - . ID=Physo132117;Parent=Physo132117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 301127 304468 . - 0 ID=Physo132117;Parent=Physo132117;rank=1 scaffold_19 . exon 301127 304468 . - . ID=Physo132117.1;Parent=Physo132117;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 305646 308041 . - . ID=Physo132119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190069;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 305646 308041 . - . ID=Physo132119;Parent=Physo132119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 305646 308041 . - . ID=Physo132119.1;Parent=Physo132119;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_19 . CDS 305825 308041 . - 0 ID=Physo132119;Parent=Physo132119;rank=1 scaffold_19 ensembl protein_coding_gene 304607 305546 . + . ID=Physo156442;biotype=protein_coding;external_name=C_scaffold_19000007;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 304607 305546 . + . ID=Physo156442;Parent=Physo156442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 304607 305210 . + 0 ID=Physo156442;Parent=Physo156442;rank=1 scaffold_19 . exon 304607 305210 . + . ID=Physo156442.1;Parent=Physo156442;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 305515 305546 . + 0 ID=Physo156442;Parent=Physo156442;rank=2 scaffold_19 . exon 305515 305546 . + . ID=Physo156442.2;Parent=Physo156442;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . biological_region 310246 310249 0.999 - . logic_name=eponine scaffold_19 . biological_region 310624 310629 0.999 - . logic_name=eponine scaffold_19 . biological_region 316761 316764 0.999 - . logic_name=eponine scaffold_19 . biological_region 316787 316791 0.999 - . logic_name=eponine scaffold_19 . biological_region 316809 316811 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 315538 315918 . - . ID=Physo132120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190070;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 315538 315918 . - . ID=Physo132120;Parent=Physo132120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 315538 315918 . - 0 ID=Physo132120;Parent=Physo132120;rank=1 scaffold_19 . exon 315538 315918 . - . ID=Physo132120.1;Parent=Physo132120;constitutive=1;rank=1 scaffold_19 . repeat_region 318618 318651 . ? . description=trf scaffold_19 . repeat_region 321559 321584 . ? . description=dust scaffold_19 . repeat_region 322792 322834 . ? . description=dust scaffold_19 ensembl protein_coding_gene 322432 323050 . + . ID=Physo108606;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_190006;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 322432 323050 . + . ID=Physo108606;Parent=Physo108606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 322432 323050 . + . ID=Physo108606.1;Parent=Physo108606;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 322449 322727 . + 0 ID=Physo108606;Parent=Physo108606;rank=1 scaffold_19 ensembl protein_coding_gene 318820 320492 . + . ID=Physo156444;biotype=protein_coding;external_name=C_scaffold_19000009;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 318820 320492 . + . ID=Physo156444;Parent=Physo156444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 318820 318938 . + 0 ID=Physo156444;Parent=Physo156444;rank=1 scaffold_19 . exon 318820 318938 . + . ID=Physo156444.1;Parent=Physo156444;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 319035 319213 . + 0 ID=Physo156444;Parent=Physo156444;rank=2 scaffold_19 . exon 319035 319213 . + . ID=Physo156444.2;Parent=Physo156444;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 319281 319432 . + 0 ID=Physo156444;Parent=Physo156444;rank=3 scaffold_19 . exon 319281 319432 . + . ID=Physo156444.3;Parent=Physo156444;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 319506 319703 . + 0 ID=Physo156444;Parent=Physo156444;rank=4 scaffold_19 . exon 319506 319703 . + . ID=Physo156444.4;Parent=Physo156444;constitutive=1;rank=4 scaffold_19 . CDS 319779 319929 . + 0 ID=Physo156444;Parent=Physo156444;rank=5 scaffold_19 . exon 319779 319929 . + . ID=Physo156444.5;Parent=Physo156444;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_19 . CDS 319984 320111 . + 0 ID=Physo156444;Parent=Physo156444;rank=6 scaffold_19 . exon 319984 320111 . + . ID=Physo156444.6;Parent=Physo156444;constitutive=1;ensembl_phase=1;rank=6 scaffold_19 . CDS 320194 320229 . + 0 ID=Physo156444;Parent=Physo156444;rank=7 scaffold_19 . exon 320194 320229 . + . ID=Physo156444.7;Parent=Physo156444;constitutive=1;rank=7 scaffold_19 . CDS 320403 320492 . + 0 ID=Physo156444;Parent=Physo156444;rank=8 scaffold_19 . exon 320403 320492 . + . ID=Physo156444.8;Parent=Physo156444;constitutive=1;rank=8 scaffold_19 ensembl protein_coding_gene 320824 322208 . - . ID=Physo156445;biotype=protein_coding;external_name=C_scaffold_19000010;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 320824 322208 . - . ID=Physo156445;Parent=Physo156445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 320824 320828 . - 0 ID=Physo156445;Parent=Physo156445;rank=3 scaffold_19 . exon 320824 320828 . - . ID=Physo156445.3;Parent=Physo156445;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 320993 321146 . - 0 ID=Physo156445;Parent=Physo156445;rank=2 scaffold_19 . exon 320993 321146 . - . ID=Physo156445.2;Parent=Physo156445;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 321261 322208 . - 0 ID=Physo156445;Parent=Physo156445;rank=1 scaffold_19 . exon 321261 322208 . - . ID=Physo156445.1;Parent=Physo156445;constitutive=1;rank=1 scaffold_19 . repeat_region 328711 328820 . - . description=Gypsy-2-I_PI-int scaffold_19 . repeat_region 329065 329669 . - . description=Gypsy-2-I_PI-int scaffold_19 . repeat_region 330028 331261 . - . description=Gypsy-2-I_PI-int scaffold_19 ensembl protein_coding_gene 335632 336035 . + . ID=Physo132123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190073;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 335632 336035 . + . ID=Physo132123;Parent=Physo132123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 335632 335712 . + 0 ID=Physo132123;Parent=Physo132123;rank=1 scaffold_19 . exon 335632 335712 . + . ID=Physo132123.1;Parent=Physo132123;constitutive=1;rank=1 scaffold_19 . CDS 335769 336035 . + 0 ID=Physo132123;Parent=Physo132123;rank=2 scaffold_19 . exon 335769 336035 . + . ID=Physo132123.2;Parent=Physo132123;constitutive=1;rank=2 scaffold_19 . biological_region 339280 339283 0.999 - . logic_name=eponine scaffold_19 . repeat_region 340005 340012 . ? . description=dust scaffold_19 . repeat_region 341525 341551 . ? . description=trf scaffold_19 . biological_region 341599 341604 0.999 + . logic_name=eponine scaffold_19 . biological_region 341705 341706 0.999 - . logic_name=eponine scaffold_19 . biological_region 341958 341962 0.999 + . logic_name=eponine scaffold_19 . biological_region 342119 342125 0.999 - . logic_name=eponine scaffold_19 . biological_region 343034 343035 0.999 + . logic_name=eponine scaffold_19 . repeat_region 344722 344953 . ? . description=dust scaffold_19 . repeat_region 345788 345798 . ? . description=dust scaffold_19 . biological_region 345852 345855 0.999 + . logic_name=eponine scaffold_19 . biological_region 345969 345975 0.999 + . logic_name=eponine scaffold_19 . biological_region 345975 345977 0.999 - . logic_name=eponine scaffold_19 . biological_region 346295 346297 0.999 - . logic_name=eponine scaffold_19 . biological_region 346456 346457 0.999 + . logic_name=eponine scaffold_19 . biological_region 347333 347335 0.999 - . logic_name=eponine scaffold_19 . repeat_region 347921 347970 . ? . description=dust scaffold_19 . biological_region 348332 348335 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 339577 345222 . + . ID=Physo132124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190074;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 339577 345222 . + . ID=Physo132124;Parent=Physo132124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 339577 339604 . + 0 ID=Physo132124;Parent=Physo132124;rank=1 scaffold_19 . exon 339577 339604 . + . ID=Physo132124.1;Parent=Physo132124;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 339845 339988 . + 0 ID=Physo132124;Parent=Physo132124;rank=2 scaffold_19 . exon 339845 339988 . + . ID=Physo132124.2;Parent=Physo132124;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 340035 340681 . + 0 ID=Physo132124;Parent=Physo132124;rank=3 scaffold_19 . exon 340035 340681 . + . ID=Physo132124.3;Parent=Physo132124;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 341204 342464 . + 0 ID=Physo132124;Parent=Physo132124;rank=4 scaffold_19 . exon 341204 342464 . + . ID=Physo132124.4;Parent=Physo132124;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_19 . CDS 342551 342844 . + 0 ID=Physo132124;Parent=Physo132124;rank=5 scaffold_19 . exon 342551 342844 . + . ID=Physo132124.5;Parent=Physo132124;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_19 . CDS 343065 343861 . + 0 ID=Physo132124;Parent=Physo132124;rank=6 scaffold_19 . exon 343065 343861 . + . ID=Physo132124.6;Parent=Physo132124;constitutive=1;ensembl_phase=1;rank=6 scaffold_19 . CDS 343888 344670 . + 0 ID=Physo132124;Parent=Physo132124;rank=7 scaffold_19 . exon 343888 344670 . + . ID=Physo132124.7;Parent=Physo132124;constitutive=1;rank=7 scaffold_19 . CDS 345022 345222 . + 0 ID=Physo132124;Parent=Physo132124;rank=8 scaffold_19 . exon 345022 345222 . + . ID=Physo132124.8;Parent=Physo132124;constitutive=1;rank=8 scaffold_19 ensembl protein_coding_gene 345812 346822 . + . ID=Physo132125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190075;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 345812 346822 . + . ID=Physo132125;Parent=Physo132125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 345812 346822 . + 0 ID=Physo132125;Parent=Physo132125;rank=1 scaffold_19 . exon 345812 346822 . + . ID=Physo132125.1;Parent=Physo132125;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 347362 347745 . + . ID=Physo132126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190076;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 347362 347745 . + . ID=Physo132126;Parent=Physo132126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 347362 347745 . + 0 ID=Physo132126;Parent=Physo132126;rank=1 scaffold_19 . exon 347362 347745 . + . ID=Physo132126.1;Parent=Physo132126;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 347867 348702 . - . ID=Physo132127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190077;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 347867 348702 . - . ID=Physo132127;Parent=Physo132127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 347867 347876 . - 0 ID=Physo132127;Parent=Physo132127;rank=2 scaffold_19 . exon 347867 347876 . - . ID=Physo132127.2;Parent=Physo132127;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 348011 348702 . - 0 ID=Physo132127;Parent=Physo132127;rank=1 scaffold_19 . exon 348011 348702 . - . ID=Physo132127.1;Parent=Physo132127;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 355214 358871 . - . ID=Physo132128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190078;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 355214 358871 . - . ID=Physo132128;Parent=Physo132128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 355214 355415 . - 0 ID=Physo132128;Parent=Physo132128;rank=3 scaffold_19 . exon 355214 355415 . - . ID=Physo132128.3;Parent=Physo132128;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 355657 356261 . - 0 ID=Physo132128;Parent=Physo132128;rank=2 scaffold_19 . exon 355657 356261 . - . ID=Physo132128.2;Parent=Physo132128;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_19 . CDS 356520 358871 . - 0 ID=Physo132128;Parent=Physo132128;rank=1 scaffold_19 . exon 356520 358871 . - . ID=Physo132128.1;Parent=Physo132128;constitutive=1;rank=1 scaffold_19 . repeat_region 359769 359904 . ? . description=trf scaffold_19 . biological_region 367422 367425 0.999 + . logic_name=eponine scaffold_19 . biological_region 367447 367450 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 361388 361891 . - . ID=Physo132129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190079;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 361388 361891 . - . ID=Physo132129;Parent=Physo132129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 361388 361891 . - 0 ID=Physo132129;Parent=Physo132129;rank=1 scaffold_19 . exon 361388 361891 . - . ID=Physo132129.1;Parent=Physo132129;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 365392 367770 . - . ID=Physo132130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190080;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 365392 367770 . - . ID=Physo132130;Parent=Physo132130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 365392 367770 . - 0 ID=Physo132130;Parent=Physo132130;rank=1 scaffold_19 . exon 365392 367770 . - . ID=Physo132130.1;Parent=Physo132130;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 368067 371079 . - . ID=Physo132131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190081;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 368067 371079 . - . ID=Physo132131;Parent=Physo132131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 368067 368635 . - 0 ID=Physo132131;Parent=Physo132131;rank=5 scaffold_19 . exon 368067 368635 . - . ID=Physo132131.5;Parent=Physo132131;constitutive=1;ensembl_phase=1;rank=5 scaffold_19 . CDS 368708 368841 . - 0 ID=Physo132131;Parent=Physo132131;rank=4 scaffold_19 . CDS 368938 369886 . - 0 ID=Physo132131;Parent=Physo132131;rank=3 scaffold_19 . CDS 369964 370077 . - 0 ID=Physo132131;Parent=Physo132131;rank=2 scaffold_19 . CDS 370167 371079 . - 0 ID=Physo132131;Parent=Physo132131;rank=1 scaffold_19 . repeat_region 377210 380220 . ? . description=dust scaffold_19 . exon 368708 368841 . - . ID=Physo132131.4;Parent=Physo132131;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_19 . exon 368938 369886 . - . ID=Physo132131.3;Parent=Physo132131;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_19 . exon 369964 370077 . - . ID=Physo132131.2;Parent=Physo132131;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . exon 370167 371079 . - . ID=Physo132131.1;Parent=Physo132131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 371218 372467 . + . ID=Physo132132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190082;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 371218 372467 . + . ID=Physo132132;Parent=Physo132132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 371218 372173 . + 0 ID=Physo132132;Parent=Physo132132;rank=1 scaffold_19 . exon 371218 372173 . + . ID=Physo132132.1;Parent=Physo132132;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 372240 372315 . + 0 ID=Physo132132;Parent=Physo132132;rank=2 scaffold_19 . exon 372240 372467 . + . ID=Physo132132.2;Parent=Physo132132;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_19 . biological_region 381746 381746 0.999 - . logic_name=eponine scaffold_19 . biological_region 382822 382825 0.999 + . logic_name=eponine scaffold_19 . repeat_region 386323 386352 . ? . description=trf scaffold_19 . repeat_region 387862 387906 . ? . description=trf scaffold_19 ensembl protein_coding_gene 381213 382141 . + . ID=Physo132133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190083;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 381213 382141 . + . ID=Physo132133;Parent=Physo132133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 381213 381410 . + 0 ID=Physo132133;Parent=Physo132133;rank=1 scaffold_19 . exon 381213 381410 . + . ID=Physo132133.1;Parent=Physo132133;constitutive=1;rank=1 scaffold_19 . CDS 381590 382141 . + 0 ID=Physo132133;Parent=Physo132133;rank=2 scaffold_19 . exon 381590 382141 . + . ID=Physo132133.2;Parent=Physo132133;constitutive=1;rank=2 scaffold_19 ensembl protein_coding_gene 388083 391846 . + . ID=Physo132134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190084;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 388083 391846 . + . ID=Physo132134;Parent=Physo132134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 388083 388221 . + 0 ID=Physo132134;Parent=Physo132134;rank=1 scaffold_19 . exon 388083 388221 . + . ID=Physo132134.1;Parent=Physo132134;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 388264 390211 . + 0 ID=Physo132134;Parent=Physo132134;rank=2 scaffold_19 . CDS 390243 390654 . + 0 ID=Physo132134;Parent=Physo132134;rank=3 scaffold_19 . CDS 390707 391846 . + 0 ID=Physo132134;Parent=Physo132134;rank=4 scaffold_19 . repeat_region 394351 394378 . ? . description=dust scaffold_19 . exon 388264 390211 . + . ID=Physo132134.2;Parent=Physo132134;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_19 . exon 390243 390654 . + . ID=Physo132134.3;Parent=Physo132134;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . exon 390707 391846 . + . ID=Physo132134.4;Parent=Physo132134;constitutive=1;rank=4 scaffold_19 ensembl protein_coding_gene 396344 398181 . + . ID=Physo132135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190085;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 396344 398181 . + . ID=Physo132135;Parent=Physo132135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 396344 396366 . + 0 ID=Physo132135;Parent=Physo132135;rank=1 scaffold_19 . exon 396344 396366 . + . ID=Physo132135.1;Parent=Physo132135;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 396597 396888 . + 0 ID=Physo132135;Parent=Physo132135;rank=2 scaffold_19 . exon 396597 396888 . + . ID=Physo132135.2;Parent=Physo132135;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 396984 397106 . + 0 ID=Physo132135;Parent=Physo132135;rank=3 scaffold_19 . exon 396984 397106 . + . ID=Physo132135.3;Parent=Physo132135;constitutive=1;rank=3 scaffold_19 . CDS 397189 398181 . + 0 ID=Physo132135;Parent=Physo132135;rank=4 scaffold_19 . exon 397189 398181 . + . ID=Physo132135.4;Parent=Physo132135;constitutive=1;rank=4 scaffold_19 . biological_region 402212 402213 0.999 - . logic_name=eponine scaffold_19 . biological_region 405004 405013 0.999 + . logic_name=eponine scaffold_19 . biological_region 406352 406356 0.999 - . logic_name=eponine scaffold_19 . biological_region 407306 407307 0.999 + . logic_name=eponine scaffold_19 . biological_region 407323 407326 0.999 + . logic_name=eponine scaffold_19 . biological_region 407356 407358 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 398375 402176 . - . ID=Physo132136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190086;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 398375 402176 . - . ID=Physo132136;Parent=Physo132136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 398375 399207 . - 0 ID=Physo132136;Parent=Physo132136;rank=9 scaffold_19 . exon 398375 399207 . - . ID=Physo132136.9;Parent=Physo132136;constitutive=1;ensembl_phase=1;rank=9 scaffold_19 . CDS 399283 399339 . - 0 ID=Physo132136;Parent=Physo132136;rank=8 scaffold_19 . exon 399283 399339 . - . ID=Physo132136.8;Parent=Physo132136;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_19 . CDS 399463 399689 . - 0 ID=Physo132136;Parent=Physo132136;rank=7 scaffold_19 . exon 399463 399689 . - . ID=Physo132136.7;Parent=Physo132136;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_19 . CDS 399972 400170 . - 0 ID=Physo132136;Parent=Physo132136;rank=6 scaffold_19 . exon 399972 400170 . - . ID=Physo132136.6;Parent=Physo132136;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_19 . CDS 400333 400584 . - 0 ID=Physo132136;Parent=Physo132136;rank=5 scaffold_19 . exon 400333 400584 . - . ID=Physo132136.5;Parent=Physo132136;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_19 . CDS 400739 401094 . - 0 ID=Physo132136;Parent=Physo132136;rank=4 scaffold_19 . exon 400739 401094 . - . ID=Physo132136.4;Parent=Physo132136;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 401220 401538 . - 0 ID=Physo132136;Parent=Physo132136;rank=3 scaffold_19 . exon 401220 401538 . - . ID=Physo132136.3;Parent=Physo132136;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_19 . CDS 401590 402025 . - 0 ID=Physo132136;Parent=Physo132136;rank=2 scaffold_19 . exon 401590 402025 . - . ID=Physo132136.2;Parent=Physo132136;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 402057 402176 . - 0 ID=Physo132136;Parent=Physo132136;rank=1 scaffold_19 . exon 402057 402176 . - . ID=Physo132136.1;Parent=Physo132136;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 403869 404243 . - . ID=Physo132137;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190087;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 403869 404243 . - . ID=Physo132137;Parent=Physo132137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 403869 404243 . - 0 ID=Physo132137;Parent=Physo132137;rank=1 scaffold_19 . exon 403869 404243 . - . ID=Physo132137.1;Parent=Physo132137;constitutive=1;rank=1 scaffold_19 . repeat_region 409651 412104 . - . description=GypsyPi-1c_I-int scaffold_19 . repeat_region 412824 413372 . - . description=GypsyPi-1c_I-int scaffold_19 . repeat_region 413653 414140 . - . description=GypsyPi-1c_I-int scaffold_19 . repeat_region 415005 415013 . ? . description=dust scaffold_19 ensembl protein_coding_gene 409177 414532 . - . ID=Physo132138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190088;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 409177 414532 . - . ID=Physo132138;Parent=Physo132138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 409177 409185 . - 0 ID=Physo132138;Parent=Physo132138;rank=7 scaffold_19 . exon 409177 409185 . - . ID=Physo132138.7;Parent=Physo132138;constitutive=1;rank=7 scaffold_19 . CDS 409529 410114 . - 0 ID=Physo132138;Parent=Physo132138;rank=6 scaffold_19 . exon 409529 410114 . - . ID=Physo132138.6;Parent=Physo132138;constitutive=1;ensembl_phase=2;rank=6 scaffold_19 . CDS 410218 410654 . - 0 ID=Physo132138;Parent=Physo132138;rank=5 scaffold_19 . exon 410218 410654 . - . ID=Physo132138.5;Parent=Physo132138;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_19 . CDS 410720 410907 . - 0 ID=Physo132138;Parent=Physo132138;rank=4 scaffold_19 . exon 410720 410907 . - . ID=Physo132138.4;Parent=Physo132138;constitutive=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 411075 413222 . - 0 ID=Physo132138;Parent=Physo132138;rank=3 scaffold_19 . exon 411075 413222 . - . ID=Physo132138.3;Parent=Physo132138;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 413384 414256 . - 0 ID=Physo132138;Parent=Physo132138;rank=2 scaffold_19 . exon 413384 414256 . - . ID=Physo132138.2;Parent=Physo132138;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 414466 414490 . - 0 ID=Physo132138;Parent=Physo132138;rank=1 scaffold_19 . exon 414466 414532 . - . ID=Physo132138.1;Parent=Physo132138;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 417831 422875 . + . ID=Physo132139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190089;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 417831 422875 . + . ID=Physo132139;Parent=Physo132139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 417831 417965 . + 0 ID=Physo132139;Parent=Physo132139;rank=1 scaffold_19 . exon 417831 417965 . + . ID=Physo132139.1;Parent=Physo132139;constitutive=1;rank=1 scaffold_19 . CDS 418170 418386 . + 0 ID=Physo132139;Parent=Physo132139;rank=2 scaffold_19 . CDS 418593 418664 . + 0 ID=Physo132139;Parent=Physo132139;rank=3 scaffold_19 . CDS 418850 419530 . + 0 ID=Physo132139;Parent=Physo132139;rank=4 scaffold_19 . CDS 419616 420610 . + 0 ID=Physo132139;Parent=Physo132139;rank=5 scaffold_19 . CDS 420655 421191 . + 0 ID=Physo132139;Parent=Physo132139;rank=6 scaffold_19 . CDS 421327 422645 . + 0 ID=Physo132139;Parent=Physo132139;rank=7 scaffold_19 . CDS 422665 422875 . + 0 ID=Physo132139;Parent=Physo132139;rank=8 scaffold_19 . biological_region 418145 418148 0.999 + . logic_name=eponine scaffold_19 . biological_region 419853 419854 0.999 + . logic_name=eponine scaffold_19 . biological_region 423525 423528 0.999 + . logic_name=eponine scaffold_19 . biological_region 423712 423717 0.999 + . logic_name=eponine scaffold_19 . biological_region 423791 423793 0.999 + . logic_name=eponine scaffold_19 . repeat_region 424828 424871 . ? . description=trf scaffold_19 . exon 418170 418386 . + . ID=Physo132139.2;Parent=Physo132139;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . exon 418593 418664 . + . ID=Physo132139.3;Parent=Physo132139;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_19 . exon 418850 419530 . + . ID=Physo132139.4;Parent=Physo132139;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_19 . exon 419616 420610 . + . ID=Physo132139.5;Parent=Physo132139;constitutive=1;ensembl_phase=1;rank=5 scaffold_19 . exon 420655 421191 . + . ID=Physo132139.6;Parent=Physo132139;constitutive=1;rank=6 scaffold_19 . exon 421327 422645 . + . ID=Physo132139.7;Parent=Physo132139;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_19 . exon 422665 422875 . + . ID=Physo132139.8;Parent=Physo132139;constitutive=1;ensembl_phase=2;rank=8 scaffold_19 ensembl protein_coding_gene 423664 424095 . - . ID=Physo132140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190090;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 423664 424095 . - . ID=Physo132140;Parent=Physo132140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 423664 424095 . - 0 ID=Physo132140;Parent=Physo132140;rank=1 scaffold_19 . exon 423664 424095 . - . ID=Physo132140.1;Parent=Physo132140;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 424686 425079 . + . ID=Physo132141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190091;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 424686 425079 . + . ID=Physo132141;Parent=Physo132141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 424686 424954 . + 0 ID=Physo132141;Parent=Physo132141;rank=1 scaffold_19 . exon 424686 424954 . + . ID=Physo132141.1;Parent=Physo132141;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 425007 425079 . + 0 ID=Physo132141;Parent=Physo132141;rank=2 scaffold_19 . exon 425007 425079 . + . ID=Physo132141.2;Parent=Physo132141;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . repeat_region 428684 428694 . ? . description=dust scaffold_19 . repeat_region 428786 428798 . ? . description=dust scaffold_19 . repeat_region 430576 430590 . ? . description=dust scaffold_19 ensembl protein_coding_gene 434749 436035 . + . ID=Physo132143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190093;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 434749 436035 . + . ID=Physo132143;Parent=Physo132143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 434749 436035 . + 0 ID=Physo132143;Parent=Physo132143;rank=1 scaffold_19 . exon 434749 436035 . + . ID=Physo132143.1;Parent=Physo132143;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 437286 438659 . + . ID=Physo132144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190094;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 437286 438659 . + . ID=Physo132144;Parent=Physo132144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 437286 438659 . + 0 ID=Physo132144;Parent=Physo132144;rank=1 scaffold_19 . exon 437286 438659 . + . ID=Physo132144.1;Parent=Physo132144;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 431130 434429 . - . ID=Physo156447;biotype=protein_coding;external_name=C_scaffold_19000012;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 431130 434429 . - . ID=Physo156447;Parent=Physo156447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 431130 431152 . - 0 ID=Physo156447;Parent=Physo156447;rank=13 scaffold_19 . exon 431130 431152 . - . ID=Physo156447.13;Parent=Physo156447;constitutive=1;ensembl_phase=1;rank=13 scaffold_19 . CDS 431216 431339 . - 0 ID=Physo156447;Parent=Physo156447;rank=12 scaffold_19 . exon 431216 431339 . - . ID=Physo156447.12;Parent=Physo156447;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_19 . CDS 431412 431721 . - 0 ID=Physo156447;Parent=Physo156447;rank=11 scaffold_19 . exon 431412 431721 . - . ID=Physo156447.11;Parent=Physo156447;constitutive=1;ensembl_phase=2;rank=11 scaffold_19 . CDS 431797 432182 . - 0 ID=Physo156447;Parent=Physo156447;rank=10 scaffold_19 . exon 431797 432182 . - . ID=Physo156447.10;Parent=Physo156447;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_19 . CDS 432228 432396 . - 0 ID=Physo156447;Parent=Physo156447;rank=9 scaffold_19 . exon 432228 432396 . - . ID=Physo156447.9;Parent=Physo156447;constitutive=1;ensembl_phase=2;rank=9 scaffold_19 . CDS 432478 432686 . - 0 ID=Physo156447;Parent=Physo156447;rank=8 scaffold_19 . exon 432478 432686 . - . ID=Physo156447.8;Parent=Physo156447;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_19 . CDS 432732 432968 . - 0 ID=Physo156447;Parent=Physo156447;rank=7 scaffold_19 . exon 432732 432968 . - . ID=Physo156447.7;Parent=Physo156447;constitutive=1;rank=7 scaffold_19 . CDS 433027 433030 . - 0 ID=Physo156447;Parent=Physo156447;rank=6 scaffold_19 . exon 433027 433030 . - . ID=Physo156447.6;Parent=Physo156447;constitutive=1;ensembl_phase=2;rank=6 scaffold_19 . CDS 433057 433297 . - 0 ID=Physo156447;Parent=Physo156447;rank=5 scaffold_19 . exon 433057 433297 . - . ID=Physo156447.5;Parent=Physo156447;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_19 . CDS 433430 433630 . - 0 ID=Physo156447;Parent=Physo156447;rank=4 scaffold_19 . exon 433430 433630 . - . ID=Physo156447.4;Parent=Physo156447;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 433685 434024 . - 0 ID=Physo156447;Parent=Physo156447;rank=3 scaffold_19 . exon 433685 434024 . - . ID=Physo156447.3;Parent=Physo156447;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_19 . CDS 434046 434168 . - 0 ID=Physo156447;Parent=Physo156447;rank=2 scaffold_19 . exon 434046 434168 . - . ID=Physo156447.2;Parent=Physo156447;constitutive=1;rank=2 scaffold_19 . CDS 434220 434429 . - 0 ID=Physo156447;Parent=Physo156447;rank=1 scaffold_19 . exon 434220 434429 . - . ID=Physo156447.1;Parent=Physo156447;constitutive=1;rank=1 scaffold_19 . biological_region 438186 438186 0.999 + . logic_name=eponine scaffold_19 . biological_region 438385 438388 0.999 + . logic_name=eponine scaffold_19 . repeat_region 441782 441825 . ? . description=trf scaffold_19 . repeat_region 441782 441826 . ? . description=trf scaffold_19 . repeat_region 445264 445307 . ? . description=trf scaffold_19 . repeat_region 445264 445308 . ? . description=trf scaffold_19 . repeat_region 450664 450675 . ? . description=dust scaffold_19 . repeat_region 452206 452213 . ? . description=dust scaffold_19 . repeat_region 455844 455856 . ? . description=dust scaffold_19 . repeat_region 458044 458070 . ? . description=trf scaffold_19 . repeat_region 459328 459381 . ? . description=trf scaffold_19 . repeat_region 461193 461239 . ? . description=trf scaffold_19 . repeat_region 461381 461439 . ? . description=trf scaffold_19 . biological_region 462135 462139 0.999 - . logic_name=eponine scaffold_19 . repeat_region 463043 463073 . ? . description=trf scaffold_19 . biological_region 463374 463375 0.999 + . logic_name=eponine scaffold_19 . biological_region 463420 463430 0.999 + . logic_name=eponine scaffold_19 . biological_region 463440 463443 0.999 - . logic_name=eponine scaffold_19 . biological_region 463587 463588 0.999 + . logic_name=eponine scaffold_19 . repeat_region 464336 464421 . ? . description=trf scaffold_19 . repeat_region 464538 464626 . ? . description=trf scaffold_19 . repeat_region 465836 465868 . ? . description=trf scaffold_19 ensembl protein_coding_gene 467684 468403 . + . ID=Physo108607;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_190007;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 467684 468403 . + . ID=Physo108607;Parent=Physo108607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 467684 468403 . + 0 ID=Physo108607;Parent=Physo108607;rank=1 scaffold_19 . exon 467684 468403 . + . ID=Physo108607.1;Parent=Physo108607;constitutive=1;rank=1 scaffold_19 . repeat_region 468692 468782 . ? . description=dust scaffold_19 . repeat_region 471510 471608 . ? . description=dust scaffold_19 . repeat_region 475790 475804 . ? . description=dust scaffold_19 . repeat_region 477518 477567 . ? . description=dust scaffold_19 ensembl protein_coding_gene 476326 477666 . + . ID=Physo132146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190096;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 476326 477666 . + . ID=Physo132146;Parent=Physo132146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 476326 476346 . + 0 ID=Physo132146;Parent=Physo132146;rank=1 scaffold_19 . exon 476326 476346 . + . ID=Physo132146.1;Parent=Physo132146;constitutive=1;rank=1 scaffold_19 . CDS 476570 477265 . + 0 ID=Physo132146;Parent=Physo132146;rank=2 scaffold_19 . exon 476570 477265 . + . ID=Physo132146.2;Parent=Physo132146;constitutive=1;rank=2 scaffold_19 . CDS 477358 477433 . + 0 ID=Physo132146;Parent=Physo132146;rank=3 scaffold_19 . exon 477358 477433 . + . ID=Physo132146.3;Parent=Physo132146;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_19 . CDS 477623 477666 . + 0 ID=Physo132146;Parent=Physo132146;rank=4 scaffold_19 . exon 477623 477666 . + . ID=Physo132146.4;Parent=Physo132146;constitutive=1;ensembl_phase=1;rank=4 scaffold_19 . biological_region 482809 482811 0.999 - . logic_name=eponine scaffold_19 . repeat_region 483644 483663 . ? . description=trf scaffold_19 . biological_region 484074 484078 0.999 - . logic_name=eponine scaffold_19 . biological_region 487252 487257 0.999 - . logic_name=eponine scaffold_19 . biological_region 487342 487344 0.999 - . logic_name=eponine scaffold_19 . biological_region 487395 487401 0.999 + . logic_name=eponine scaffold_19 . biological_region 487470 487472 0.999 + . logic_name=eponine scaffold_19 . biological_region 487514 487518 0.999 + . logic_name=eponine scaffold_19 . biological_region 487565 487572 0.999 - . logic_name=eponine scaffold_19 . biological_region 487628 487630 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 480293 481468 . - . ID=Physo108608;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_190008;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 480293 481468 . - . ID=Physo108608;Parent=Physo108608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 480293 481468 . - 0 ID=Physo108608;Parent=Physo108608;rank=1 scaffold_19 . exon 480293 481468 . - . ID=Physo108608.1;Parent=Physo108608;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 481638 484700 . - . ID=Physo132148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190098;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 481638 484700 . - . ID=Physo132148;Parent=Physo132148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 481638 483284 . - . ID=Physo132148.4;Parent=Physo132148;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_19 . CDS 481640 483284 . - 0 ID=Physo132148;Parent=Physo132148;rank=4 scaffold_19 . CDS 483311 483479 . - 0 ID=Physo132148;Parent=Physo132148;rank=3 scaffold_19 . exon 483311 483479 . - . ID=Physo132148.3;Parent=Physo132148;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_19 . CDS 484036 484147 . - 0 ID=Physo132148;Parent=Physo132148;rank=2 scaffold_19 . exon 484036 484147 . - . ID=Physo132148.2;Parent=Physo132148;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 484198 484671 . - 0 ID=Physo132148;Parent=Physo132148;rank=1 scaffold_19 . exon 484198 484700 . - . ID=Physo132148.1;Parent=Physo132148;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 486921 488730 . + . ID=Physo132149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190099;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 486921 488730 . + . ID=Physo132149;Parent=Physo132149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 486921 486941 . + 0 ID=Physo132149;Parent=Physo132149;rank=1 scaffold_19 . exon 486921 486941 . + . ID=Physo132149.1;Parent=Physo132149;constitutive=1;rank=1 scaffold_19 . CDS 487165 487860 . + 0 ID=Physo132149;Parent=Physo132149;rank=2 scaffold_19 . exon 487165 487860 . + . ID=Physo132149.2;Parent=Physo132149;constitutive=1;rank=2 scaffold_19 . CDS 487953 488678 . + 0 ID=Physo132149;Parent=Physo132149;rank=3 scaffold_19 . repeat_region 489937 489945 . ? . description=dust scaffold_19 . repeat_region 492960 492979 . ? . description=dust scaffold_19 . repeat_region 495853 495860 . ? . description=dust scaffold_19 . repeat_region 496716 496723 . ? . description=dust scaffold_19 . exon 487953 488730 . + . ID=Physo132149.3;Parent=Physo132149;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_19 ensembl protein_coding_gene 488975 489549 . - . ID=Physo132150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190100;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 488975 489549 . - . ID=Physo132150;Parent=Physo132150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 488975 488986 . - 0 ID=Physo132150;Parent=Physo132150;rank=2 scaffold_19 . exon 488975 488986 . - . ID=Physo132150.2;Parent=Physo132150;constitutive=1;rank=2 scaffold_19 . CDS 489025 489549 . - 0 ID=Physo132150;Parent=Physo132150;rank=1 scaffold_19 . exon 489025 489549 . - . ID=Physo132150.1;Parent=Physo132150;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 489719 493250 . + . ID=Physo132151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190101;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 489719 493250 . + . ID=Physo132151;Parent=Physo132151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 489719 489769 . + 0 ID=Physo132151;Parent=Physo132151;rank=1 scaffold_19 . exon 489719 489769 . + . ID=Physo132151.1;Parent=Physo132151;constitutive=1;rank=1 scaffold_19 . CDS 489838 489874 . + 0 ID=Physo132151;Parent=Physo132151;rank=2 scaffold_19 . exon 489838 489874 . + . ID=Physo132151.2;Parent=Physo132151;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 489961 490025 . + 0 ID=Physo132151;Parent=Physo132151;rank=3 scaffold_19 . exon 489961 490025 . + . ID=Physo132151.3;Parent=Physo132151;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 490103 490471 . + 0 ID=Physo132151;Parent=Physo132151;rank=4 scaffold_19 . exon 490103 490471 . + . ID=Physo132151.4;Parent=Physo132151;constitutive=1;rank=4 scaffold_19 . CDS 490831 490932 . + 0 ID=Physo132151;Parent=Physo132151;rank=5 scaffold_19 . exon 490831 490932 . + . ID=Physo132151.5;Parent=Physo132151;constitutive=1;rank=5 scaffold_19 . CDS 491010 493250 . + 0 ID=Physo132151;Parent=Physo132151;rank=6 scaffold_19 . exon 491010 493250 . + . ID=Physo132151.6;Parent=Physo132151;constitutive=1;rank=6 scaffold_19 ensembl protein_coding_gene 493449 494997 . + . ID=Physo132152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190102;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 493449 494997 . + . ID=Physo132152;Parent=Physo132152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 493449 493761 . + 0 ID=Physo132152;Parent=Physo132152;rank=1 scaffold_19 . exon 493449 493761 . + . ID=Physo132152.1;Parent=Physo132152;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 493867 494530 . + 0 ID=Physo132152;Parent=Physo132152;rank=2 scaffold_19 . exon 493867 494530 . + . ID=Physo132152.2;Parent=Physo132152;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_19 . CDS 494709 494922 . + 0 ID=Physo132152;Parent=Physo132152;rank=3 scaffold_19 . exon 494709 494922 . + . ID=Physo132152.3;Parent=Physo132152;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 494980 494997 . + 0 ID=Physo132152;Parent=Physo132152;rank=4 scaffold_19 . exon 494980 494997 . + . ID=Physo132152.4;Parent=Physo132152;constitutive=1;rank=4 scaffold_19 ensembl protein_coding_gene 496916 500378 . - . ID=Physo132153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190103;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 496916 500378 . - . ID=Physo132153;Parent=Physo132153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 496916 500378 . - . ID=Physo132153.1;Parent=Physo132153;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_19 . CDS 497097 500378 . - 0 ID=Physo132153;Parent=Physo132153;rank=1 scaffold_19 . biological_region 498416 498421 0.999 + . logic_name=eponine scaffold_19 . biological_region 498437 498440 0.999 - . logic_name=eponine scaffold_19 . biological_region 498444 498447 0.999 - . logic_name=eponine scaffold_19 . biological_region 499518 499522 0.999 + . logic_name=eponine scaffold_19 . biological_region 499605 499611 0.999 + . logic_name=eponine scaffold_19 . biological_region 499697 499700 0.999 + . logic_name=eponine scaffold_19 . biological_region 499724 499727 0.999 + . logic_name=eponine scaffold_19 . biological_region 500267 500270 0.999 + . logic_name=eponine scaffold_19 . biological_region 500402 500402 0.999 - . logic_name=eponine scaffold_19 . repeat_region 500670 500720 . ? . description=trf scaffold_19 . repeat_region 502216 502253 . ? . description=trf scaffold_19 . biological_region 503246 503246 0.999 + . logic_name=eponine scaffold_19 . biological_region 503364 503366 0.999 - . logic_name=eponine scaffold_19 . biological_region 503490 503493 0.999 + . logic_name=eponine scaffold_19 . repeat_region 503681 503758 . ? . description=trf scaffold_19 . repeat_region 505490 505536 . ? . description=trf scaffold_19 . repeat_region 506950 507006 . ? . description=trf scaffold_19 ensembl protein_coding_gene 502957 503613 . - . ID=Physo114189;biotype=protein_coding;external_name=estExt_Genewise1.C_190027;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 502957 503613 . - . ID=Physo114189;Parent=Physo114189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 502957 503535 . - 0 ID=Physo114189;Parent=Physo114189;rank=1 scaffold_19 . exon 502957 503613 . - . ID=Physo114189.1;Parent=Physo114189;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . repeat_region 510267 510287 . ? . description=dust scaffold_19 . repeat_region 512164 512171 . ? . description=dust scaffold_19 . repeat_region 514603 514610 . ? . description=dust scaffold_19 ensembl protein_coding_gene 516304 517494 . - . ID=Physo132155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190105;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 516304 517494 . - . ID=Physo132155;Parent=Physo132155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 516304 517494 . - 0 ID=Physo132155;Parent=Physo132155;rank=1 scaffold_19 . exon 516304 517494 . - . ID=Physo132155.1;Parent=Physo132155;constitutive=1;rank=1 scaffold_19 . biological_region 518800 518803 0.999 - . logic_name=eponine scaffold_19 . repeat_region 519055 519083 . ? . description=trf scaffold_19 . biological_region 519878 519881 0.999 - . logic_name=eponine scaffold_19 . repeat_region 520517 520543 . ? . description=trf scaffold_19 . biological_region 521216 521217 0.999 - . logic_name=eponine scaffold_19 . biological_region 521403 521407 0.999 + . logic_name=eponine scaffold_19 . biological_region 523447 523451 0.999 - . logic_name=eponine scaffold_19 . biological_region 523637 523638 0.999 + . logic_name=eponine scaffold_19 . repeat_region 524310 524336 . ? . description=trf scaffold_19 . biological_region 524973 524976 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 519497 521599 . - . ID=Physo132156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190106;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 519497 521599 . - . ID=Physo132156;Parent=Physo132156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 519497 521599 . - 0 ID=Physo132156;Parent=Physo132156;rank=1 scaffold_19 . exon 519497 521599 . - . ID=Physo132156.1;Parent=Physo132156;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 523254 525356 . + . ID=Physo132157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190107;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 523254 525356 . + . ID=Physo132157;Parent=Physo132157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 523254 525356 . + 0 ID=Physo132157;Parent=Physo132157;rank=1 scaffold_19 . exon 523254 525356 . + . ID=Physo132157.1;Parent=Physo132157;constitutive=1;rank=1 scaffold_19 . repeat_region 528307 528316 . ? . description=dust scaffold_19 . repeat_region 530626 530641 . ? . description=dust scaffold_19 . repeat_region 537377 537552 . - . description=GypsyPi-1c_I-int scaffold_19 . repeat_region 537553 538100 . - . description=GypsyPi-1c_I-int scaffold_19 ensembl protein_coding_gene 529068 529832 . - . ID=Physo132158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190108;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 529068 529832 . - . ID=Physo132158;Parent=Physo132158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 529068 529832 . - 0 ID=Physo132158;Parent=Physo132158;rank=1 scaffold_19 . exon 529068 529832 . - . ID=Physo132158.1;Parent=Physo132158;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 537086 538376 . - . ID=Physo132159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190109;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 537086 538376 . - . ID=Physo132159;Parent=Physo132159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 537086 537173 . - 0 ID=Physo132159;Parent=Physo132159;rank=3 scaffold_19 . exon 537086 537173 . - . ID=Physo132159.3;Parent=Physo132159;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 537218 537853 . - 0 ID=Physo132159;Parent=Physo132159;rank=2 scaffold_19 . exon 537218 537853 . - . ID=Physo132159.2;Parent=Physo132159;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_19 . CDS 537952 538376 . - 0 ID=Physo132159;Parent=Physo132159;rank=1 scaffold_19 . biological_region 538901 538904 0.999 - . logic_name=eponine scaffold_19 . biological_region 545367 545371 0.999 - . logic_name=eponine scaffold_19 . biological_region 545458 545463 0.999 - . logic_name=eponine scaffold_19 . biological_region 545513 545515 0.999 + . logic_name=eponine scaffold_19 . biological_region 545712 545713 0.999 + . logic_name=eponine scaffold_19 . biological_region 546304 546311 0.999 - . logic_name=eponine scaffold_19 . biological_region 546349 546359 0.999 - . logic_name=eponine scaffold_19 . biological_region 546632 546636 0.999 - . logic_name=eponine scaffold_19 . biological_region 546687 546693 0.999 + . logic_name=eponine scaffold_19 . biological_region 547265 547269 0.999 + . logic_name=eponine scaffold_19 . exon 537952 538376 . - . ID=Physo132159.1;Parent=Physo132159;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 544086 547606 . - . ID=Physo132160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190110;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 544086 547606 . - . ID=Physo132160;Parent=Physo132160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 544086 545429 . - 0 ID=Physo132160;Parent=Physo132160;rank=5 scaffold_19 . exon 544086 545429 . - . ID=Physo132160.5;Parent=Physo132160;constitutive=1;rank=5 scaffold_19 . CDS 545500 546364 . - 0 ID=Physo132160;Parent=Physo132160;rank=4 scaffold_19 . exon 545500 546364 . - . ID=Physo132160.4;Parent=Physo132160;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 546584 546715 . - 0 ID=Physo132160;Parent=Physo132160;rank=3 scaffold_19 . exon 546584 546715 . - . ID=Physo132160.3;Parent=Physo132160;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_19 . CDS 546742 546985 . - 0 ID=Physo132160;Parent=Physo132160;rank=2 scaffold_19 . exon 546742 546985 . - . ID=Physo132160.2;Parent=Physo132160;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_19 . CDS 547042 547606 . - 0 ID=Physo132160;Parent=Physo132160;rank=1 scaffold_19 . exon 547042 547606 . - . ID=Physo132160.1;Parent=Physo132160;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . repeat_region 548701 548717 . ? . description=dust scaffold_19 . repeat_region 549107 549115 . ? . description=dust scaffold_19 . repeat_region 549250 549267 . ? . description=dust scaffold_19 . repeat_region 549347 549357 . ? . description=dust scaffold_19 . repeat_region 549363 549444 . ? . description=trf scaffold_19 . repeat_region 549731 549739 . ? . description=dust scaffold_19 . repeat_region 550711 550718 . ? . description=dust scaffold_19 . repeat_region 551661 551699 . ? . description=trf scaffold_19 . repeat_region 551853 551893 . ? . description=trf scaffold_19 . repeat_region 553795 553802 . ? . description=dust scaffold_19 . repeat_region 554335 554357 . ? . description=trf scaffold_19 . repeat_region 554368 554375 . ? . description=dust scaffold_19 . repeat_region 555731 555738 . ? . description=dust scaffold_19 . repeat_region 556347 556354 . ? . description=dust scaffold_19 . repeat_region 556755 565801 . ? . description=dust scaffold_19 ensembl protein_coding_gene 556303 556750 . - . ID=Physo114217;biotype=protein_coding;external_name=estExt_Genewise1.C_190055;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 556303 556750 . - . ID=Physo114217;Parent=Physo114217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 556303 556340 . - 0 ID=Physo114217;Parent=Physo114217;rank=2 scaffold_19 . exon 556303 556340 . - . ID=Physo114217.2;Parent=Physo114217;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 556411 556594 . - 0 ID=Physo114217;Parent=Physo114217;rank=1 scaffold_19 . exon 556411 556750 . - . ID=Physo114217.1;Parent=Physo114217;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_19 . biological_region 566326 566327 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 565947 566711 . + . ID=Physo132161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190111;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 565947 566711 . + . ID=Physo132161;Parent=Physo132161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 565947 566711 . + 0 ID=Physo132161;Parent=Physo132161;rank=1 scaffold_19 . exon 565947 566711 . + . ID=Physo132161.1;Parent=Physo132161;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 567122 568093 . - . ID=Physo132162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190112;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 567122 568093 . - . ID=Physo132162;Parent=Physo132162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 567122 568093 . - 0 ID=Physo132162;Parent=Physo132162;rank=1 scaffold_19 . exon 567122 568093 . - . ID=Physo132162.1;Parent=Physo132162;constitutive=1;rank=1 scaffold_19 . repeat_region 572873 572900 . ? . description=dust scaffold_19 . repeat_region 572877 572900 . ? . description=trf scaffold_19 . repeat_region 573273 573318 . ? . description=trf scaffold_19 . repeat_region 573617 573704 . ? . description=trf scaffold_19 . repeat_region 573757 573793 . ? . description=trf scaffold_19 . repeat_region 573759 573793 . ? . description=trf scaffold_19 . repeat_region 574347 574380 . ? . description=dust scaffold_19 . repeat_region 574347 574380 . ? . description=trf scaffold_19 ensembl protein_coding_gene 570840 572033 . - . ID=Physo132163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190113;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 570840 572033 . - . ID=Physo132163;Parent=Physo132163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 570840 571119 . - 0 ID=Physo132163;Parent=Physo132163;rank=2 scaffold_19 . exon 570840 571119 . - . ID=Physo132163.2;Parent=Physo132163;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 571194 571936 . - 0 ID=Physo132163;Parent=Physo132163;rank=1 scaffold_19 . exon 571194 572033 . - . ID=Physo132163.1;Parent=Physo132163;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 572591 573332 . + . ID=Physo132164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190114;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 572591 573332 . + . ID=Physo132164;Parent=Physo132164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 572591 573120 . + 0 ID=Physo132164;Parent=Physo132164;rank=1 scaffold_19 . exon 572591 573120 . + . ID=Physo132164.1;Parent=Physo132164;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 573194 573332 . + 0 ID=Physo132164;Parent=Physo132164;rank=2 scaffold_19 . exon 573194 573332 . + . ID=Physo132164.2;Parent=Physo132164;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 ensembl protein_coding_gene 573479 574600 . - . ID=Physo132165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190115;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 573479 574600 . - . ID=Physo132165;Parent=Physo132165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 573479 574600 . - 0 ID=Physo132165;Parent=Physo132165;rank=1 scaffold_19 . exon 573479 574600 . - . ID=Physo132165.1;Parent=Physo132165;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 576426 577043 . + . ID=Physo132166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190116;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 576426 577043 . + . ID=Physo132166;Parent=Physo132166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 576426 576698 . + 0 ID=Physo132166;Parent=Physo132166;rank=1 scaffold_19 . exon 576426 576698 . + . ID=Physo132166.1;Parent=Physo132166;constitutive=1;rank=1 scaffold_19 . CDS 576804 577043 . + 0 ID=Physo132166;Parent=Physo132166;rank=2 scaffold_19 . exon 576804 577043 . + . ID=Physo132166.2;Parent=Physo132166;constitutive=1;rank=2 scaffold_19 . biological_region 581524 581524 0.999 + . logic_name=eponine scaffold_19 . biological_region 582225 582228 0.999 - . logic_name=eponine scaffold_19 . biological_region 585260 585270 0.999 - . logic_name=eponine scaffold_19 . biological_region 585440 585444 0.999 - . logic_name=eponine scaffold_19 . biological_region 587236 587237 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 578662 579750 . - . ID=Physo132167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190117;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 578662 579750 . - . ID=Physo132167;Parent=Physo132167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 578662 579750 . - 0 ID=Physo132167;Parent=Physo132167;rank=1 scaffold_19 . exon 578662 579750 . - . ID=Physo132167.1;Parent=Physo132167;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 581249 582470 . + . ID=Physo132168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190118;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 581249 582470 . + . ID=Physo132168;Parent=Physo132168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 581249 581695 . + 0 ID=Physo132168;Parent=Physo132168;rank=1 scaffold_19 . exon 581249 581695 . + . ID=Physo132168.1;Parent=Physo132168;constitutive=1;rank=1 scaffold_19 . CDS 581919 582470 . + 0 ID=Physo132168;Parent=Physo132168;rank=2 scaffold_19 . exon 581919 582470 . + . ID=Physo132168.2;Parent=Physo132168;constitutive=1;rank=2 scaffold_19 . repeat_region 590627 590642 . ? . description=dust scaffold_19 . repeat_region 594285 594295 . ? . description=dust scaffold_19 ensembl protein_coding_gene 587915 590110 . + . ID=Physo132169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190119;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 587915 590110 . + . ID=Physo132169;Parent=Physo132169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 587915 590110 . + 0 ID=Physo132169;Parent=Physo132169;rank=1 scaffold_19 . exon 587915 590110 . + . ID=Physo132169.1;Parent=Physo132169;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 592430 594267 . + . ID=Physo132170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190120;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 592430 594267 . + . ID=Physo132170;Parent=Physo132170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 592430 592604 . + . ID=Physo132170.1;Parent=Physo132170;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_19 . exon 592693 594267 . + . ID=Physo132170.2;Parent=Physo132170;constitutive=1;ensembl_phase=-1;rank=2 scaffold_19 . CDS 592975 594267 . + 0 ID=Physo132170;Parent=Physo132170;rank=1 scaffold_19 ensembl protein_coding_gene 596903 599290 . + . ID=Physo132171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190121;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 596903 599290 . + . ID=Physo132171;Parent=Physo132171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 596903 599290 . + 0 ID=Physo132171;Parent=Physo132171;rank=1 scaffold_19 . exon 596903 599290 . + . ID=Physo132171.1;Parent=Physo132171;constitutive=1;rank=1 scaffold_19 . biological_region 597304 597305 0.999 + . logic_name=eponine scaffold_19 . repeat_region 600945 601126 . ? . description=trf scaffold_19 . repeat_region 601599 601643 . ? . description=trf scaffold_19 . repeat_region 602298 602342 . ? . description=trf scaffold_19 . repeat_region 603402 603456 . ? . description=trf scaffold_19 . repeat_region 603711 603757 . ? . description=trf scaffold_19 . repeat_region 604710 604734 . ? . description=trf scaffold_19 . biological_region 605365 605367 0.999 - . logic_name=eponine scaffold_19 . repeat_region 605896 606171 . - . description=GypsyPi-1c_I-int scaffold_19 . repeat_region 606302 606345 . ? . description=trf scaffold_19 . repeat_region 606492 608879 . - . description=GypsyPi-1c_I-int scaffold_19 ensembl protein_coding_gene 606242 609106 . - . ID=Physo132172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190122;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 606242 609106 . - . ID=Physo132172;Parent=Physo132172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 606242 606260 . - 0 ID=Physo132172;Parent=Physo132172;rank=7 scaffold_19 . exon 606242 606260 . - . ID=Physo132172.7;Parent=Physo132172;constitutive=1;ensembl_phase=2;rank=7 scaffold_19 . CDS 606299 606449 . - 0 ID=Physo132172;Parent=Physo132172;rank=6 scaffold_19 . exon 606299 606449 . - . ID=Physo132172.6;Parent=Physo132172;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_19 . CDS 606872 607019 . - 0 ID=Physo132172;Parent=Physo132172;rank=5 scaffold_19 . exon 606872 607019 . - . ID=Physo132172.5;Parent=Physo132172;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_19 . CDS 607089 607424 . - 0 ID=Physo132172;Parent=Physo132172;rank=4 scaffold_19 . exon 607089 607424 . - . ID=Physo132172.4;Parent=Physo132172;constitutive=1;rank=4 scaffold_19 . CDS 607569 607778 . - 0 ID=Physo132172;Parent=Physo132172;rank=3 scaffold_19 . CDS 607872 608303 . - 0 ID=Physo132172;Parent=Physo132172;rank=2 scaffold_19 . CDS 608456 609106 . - 0 ID=Physo132172;Parent=Physo132172;rank=1 scaffold_19 . repeat_region 612549 612566 . ? . description=dust scaffold_19 . repeat_region 614215 614256 . ? . description=dust scaffold_19 . repeat_region 614454 614465 . ? . description=dust scaffold_19 . exon 607569 607778 . - . ID=Physo132172.3;Parent=Physo132172;constitutive=1;rank=3 scaffold_19 . exon 607872 608303 . - . ID=Physo132172.2;Parent=Physo132172;constitutive=1;rank=2 scaffold_19 . exon 608456 609106 . - . ID=Physo132172.1;Parent=Physo132172;constitutive=1;rank=1 scaffold_19 . repeat_region 618064 618115 . ? . description=trf scaffold_19 . repeat_region 618375 618410 . ? . description=trf scaffold_19 . repeat_region 620284 620324 . ? . description=trf scaffold_19 . biological_region 621382 621385 0.999 + . logic_name=eponine scaffold_19 . repeat_region 621961 622049 . ? . description=trf scaffold_19 ensembl protein_coding_gene 620974 621528 . + . ID=Physo132173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190123;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 620974 621528 . + . ID=Physo132173;Parent=Physo132173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 620974 621255 . + 0 ID=Physo132173;Parent=Physo132173;rank=1 scaffold_19 . exon 620974 621255 . + . ID=Physo132173.1;Parent=Physo132173;constitutive=1;rank=1 scaffold_19 . CDS 621322 621528 . + 0 ID=Physo132173;Parent=Physo132173;rank=2 scaffold_19 . exon 621322 621528 . + . ID=Physo132173.2;Parent=Physo132173;constitutive=1;rank=2 scaffold_19 ensembl protein_coding_gene 623883 624446 . - . ID=Physo132174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190124;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 623883 624446 . - . ID=Physo132174;Parent=Physo132174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 623883 624446 . - 0 ID=Physo132174;Parent=Physo132174;rank=1 scaffold_19 . exon 623883 624446 . - . ID=Physo132174.1;Parent=Physo132174;constitutive=1;rank=1 scaffold_19 . repeat_region 629285 653357 . ? . description=dust scaffold_19 . repeat_region 629285 653357 . ? . description=dust scaffold_19 . repeat_region 653634 653641 . ? . description=dust scaffold_19 . repeat_region 654363 654451 . ? . description=trf scaffold_19 . biological_region 655086 655090 0.999 - . logic_name=eponine scaffold_19 . repeat_region 655387 655394 . ? . description=dust scaffold_19 . repeat_region 656116 656204 . ? . description=trf scaffold_19 . biological_region 656840 656844 0.999 - . logic_name=eponine scaffold_19 . repeat_region 668566 668592 . ? . description=trf scaffold_19 . biological_region 670678 670682 0.999 + . logic_name=eponine scaffold_19 . biological_region 670704 670709 0.999 + . logic_name=eponine scaffold_19 . biological_region 670714 670720 0.999 - . logic_name=eponine scaffold_19 . biological_region 670725 670730 0.999 - . logic_name=eponine scaffold_19 . biological_region 670985 670986 0.999 - . logic_name=eponine scaffold_19 . biological_region 671040 671041 0.999 + . logic_name=eponine scaffold_19 . biological_region 671149 671149 0.999 - . logic_name=eponine scaffold_19 . biological_region 671168 671176 0.999 + . logic_name=eponine scaffold_19 . biological_region 671203 671205 0.999 - . logic_name=eponine scaffold_19 . biological_region 671256 671258 0.999 - . logic_name=eponine scaffold_19 . biological_region 671257 671261 0.999 + . logic_name=eponine scaffold_19 . biological_region 671509 671511 0.999 + . logic_name=eponine scaffold_19 . biological_region 673174 673176 0.999 + . logic_name=eponine scaffold_19 . biological_region 673398 673401 0.999 - . logic_name=eponine scaffold_19 . biological_region 673492 673494 0.999 - . logic_name=eponine scaffold_19 . biological_region 673505 673509 0.999 + . logic_name=eponine scaffold_19 . biological_region 674398 674400 0.999 + . logic_name=eponine scaffold_19 . biological_region 674470 674474 0.999 + . logic_name=eponine scaffold_19 . biological_region 674728 674728 0.999 - . logic_name=eponine scaffold_19 . biological_region 674751 674757 0.999 - . logic_name=eponine scaffold_19 . biological_region 674806 674811 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 670555 673827 . + . ID=Physo132175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190125;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 670555 673827 . + . ID=Physo132175;Parent=Physo132175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 670555 673752 . + 0 ID=Physo132175;Parent=Physo132175;rank=1 scaffold_19 . exon 670555 673827 . + . ID=Physo132175.1;Parent=Physo132175;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 676831 678683 . + . ID=Physo132177;biotype=protein_coding;description=Cell 5A endo-1%2C4-betaglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q2I0L4];external_name=EGL-V.2;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 676831 678683 . + . ID=Physo132177;Parent=Physo132177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 676831 677109 . + 0 ID=Physo132177;Parent=Physo132177;rank=1 scaffold_19 . exon 676831 677109 . + . ID=Physo132177.1;Parent=Physo132177;constitutive=1;rank=1 scaffold_19 . CDS 677187 678683 . + 0 ID=Physo132177;Parent=Physo132177;rank=2 scaffold_19 . repeat_region 679005 679013 . ? . description=dust scaffold_19 . exon 677187 678683 . + . ID=Physo132177.2;Parent=Physo132177;constitutive=1;rank=2 scaffold_19 ensembl protein_coding_gene 681526 683203 . + . ID=Physo132179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190129;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 681526 683203 . + . ID=Physo132179;Parent=Physo132179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 681526 682021 . + 0 ID=Physo132179;Parent=Physo132179;rank=1 scaffold_19 . exon 681526 682021 . + . ID=Physo132179.1;Parent=Physo132179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 682098 683155 . + 0 ID=Physo132179;Parent=Physo132179;rank=2 scaffold_19 . exon 682098 683203 . + . ID=Physo132179.2;Parent=Physo132179;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_19 ensembl protein_coding_gene 683438 685511 . + . ID=Physo132180;biotype=protein_coding;description=Cell 5A endo-1%2C4-betaglucanase [Source:UniProtKB/TrEMBL%3BAcc:Q2I0L2];external_name=EGL-V.5;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 683438 685511 . + . ID=Physo132180;Parent=Physo132180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 683438 683446 . + 0 ID=Physo132180;Parent=Physo132180;rank=1 scaffold_19 . exon 683438 683446 . + . ID=Physo132180.1;Parent=Physo132180;constitutive=1;rank=1 scaffold_19 . CDS 683530 683814 . + 0 ID=Physo132180;Parent=Physo132180;rank=2 scaffold_19 . exon 683530 683814 . + . ID=Physo132180.2;Parent=Physo132180;constitutive=1;rank=2 scaffold_19 . CDS 683896 684118 . + 0 ID=Physo132180;Parent=Physo132180;rank=3 scaffold_19 . exon 683896 684118 . + . ID=Physo132180.3;Parent=Physo132180;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_19 . CDS 684191 684357 . + 0 ID=Physo132180;Parent=Physo132180;rank=4 scaffold_19 . exon 684191 684357 . + . ID=Physo132180.4;Parent=Physo132180;constitutive=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 684435 685511 . + 0 ID=Physo132180;Parent=Physo132180;rank=5 scaffold_19 . exon 684435 685511 . + . ID=Physo132180.5;Parent=Physo132180;constitutive=1;rank=5 scaffold_19 . repeat_region 688546 688592 . ? . description=trf scaffold_19 . repeat_region 690846 690936 . ? . description=trf scaffold_19 . repeat_region 690871 690929 . ? . description=trf scaffold_19 . repeat_region 690984 691036 . ? . description=trf scaffold_19 . repeat_region 691019 691067 . ? . description=trf scaffold_19 . repeat_region 691149 691207 . ? . description=trf scaffold_19 . repeat_region 691407 691454 . ? . description=trf scaffold_19 . repeat_region 691709 692012 . + . description=GypsyPi-1c_LTR scaffold_19 . repeat_region 692013 698752 . + . description=GypsyPi-1c_I-int scaffold_19 . biological_region 692258 692260 0.999 + . logic_name=eponine scaffold_19 . biological_region 692515 692519 0.999 + . logic_name=eponine scaffold_19 . biological_region 692534 692537 0.999 - . logic_name=eponine scaffold_19 . repeat_region 693817 693982 . ? . description=trf scaffold_19 . repeat_region 693961 694031 . ? . description=trf scaffold_19 . repeat_region 696265 696288 . ? . description=trf scaffold_19 . biological_region 696676 696680 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 688786 689494 . - . ID=Physo114227;biotype=protein_coding;external_name=estExt_Genewise1.C_190065;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 688786 689494 . - . ID=Physo114227;Parent=Physo114227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 688786 689012 . - 0 ID=Physo114227;Parent=Physo114227;rank=2 scaffold_19 . exon 688786 689012 . - . ID=Physo114227.2;Parent=Physo114227;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 689033 689180 . - 0 ID=Physo114227;Parent=Physo114227;rank=1 scaffold_19 . exon 689033 689494 . - . ID=Physo114227.1;Parent=Physo114227;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 690869 691290 . + . ID=Physo132181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190131;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 690869 691290 . + . ID=Physo132181;Parent=Physo132181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 690869 691021 . + 0 ID=Physo132181;Parent=Physo132181;rank=1 scaffold_19 . exon 690869 691021 . + . ID=Physo132181.1;Parent=Physo132181;constitutive=1;rank=1 scaffold_19 . CDS 691126 691290 . + 0 ID=Physo132181;Parent=Physo132181;rank=2 scaffold_19 . exon 691126 691290 . + . ID=Physo132181.2;Parent=Physo132181;constitutive=1;rank=2 scaffold_19 ensembl protein_coding_gene 692101 696807 . + . ID=Physo132182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190132;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 692101 696807 . + . ID=Physo132182;Parent=Physo132182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 692101 693052 . + 0 ID=Physo132182;Parent=Physo132182;rank=1 scaffold_19 . exon 692101 693052 . + . ID=Physo132182.1;Parent=Physo132182;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 693181 693611 . + 0 ID=Physo132182;Parent=Physo132182;rank=2 scaffold_19 . exon 693181 693611 . + . ID=Physo132182.2;Parent=Physo132182;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 693778 696807 . + 0 ID=Physo132182;Parent=Physo132182;rank=3 scaffold_19 . exon 693778 696807 . + . ID=Physo132182.3;Parent=Physo132182;constitutive=1;rank=3 scaffold_19 . repeat_region 699829 699836 . ? . description=dust scaffold_19 . repeat_region 700001 700019 . ? . description=dust scaffold_19 ensembl protein_coding_gene 700226 702123 . + . ID=Physo108609;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_190009;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 700226 702123 . + . ID=Physo108609;Parent=Physo108609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 700226 700255 . + 0 ID=Physo108609;Parent=Physo108609;rank=1 scaffold_19 . exon 700226 700255 . + . ID=Physo108609.1;Parent=Physo108609;constitutive=1;rank=1 scaffold_19 . CDS 700299 701932 . + 0 ID=Physo108609;Parent=Physo108609;rank=2 scaffold_19 . exon 700299 701932 . + . ID=Physo108609.2;Parent=Physo108609;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_19 . CDS 702021 702123 . + 0 ID=Physo108609;Parent=Physo108609;rank=3 scaffold_19 . exon 702021 702123 . + . ID=Physo108609.3;Parent=Physo108609;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 ensembl protein_coding_gene 697252 699515 . - . ID=Physo132183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190133;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 697252 699515 . - . ID=Physo132183;Parent=Physo132183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 697252 697756 . - 0 ID=Physo132183;Parent=Physo132183;rank=3 scaffold_19 . exon 697252 697756 . - . ID=Physo132183.3;Parent=Physo132183;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 697857 699422 . - 0 ID=Physo132183;Parent=Physo132183;rank=2 scaffold_19 . exon 697857 699422 . - . ID=Physo132183.2;Parent=Physo132183;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_19 . CDS 699445 699515 . - 0 ID=Physo132183;Parent=Physo132183;rank=1 scaffold_19 . exon 699445 699515 . - . ID=Physo132183.1;Parent=Physo132183;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 702442 707417 . - . ID=Physo132185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190135;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 702442 707417 . - . ID=Physo132185;Parent=Physo132185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 702442 703104 . - 0 ID=Physo132185;Parent=Physo132185;rank=14 scaffold_19 . exon 702442 703104 . - . ID=Physo132185.14;Parent=Physo132185;constitutive=1;rank=14 scaffold_19 . CDS 703220 703572 . - 0 ID=Physo132185;Parent=Physo132185;rank=13 scaffold_19 . exon 703220 703572 . - . ID=Physo132185.13;Parent=Physo132185;constitutive=1;ensembl_phase=1;rank=13 scaffold_19 . CDS 703640 703749 . - 0 ID=Physo132185;Parent=Physo132185;rank=12 scaffold_19 . exon 703640 703749 . - . ID=Physo132185.12;Parent=Physo132185;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_19 . CDS 703824 704038 . - 0 ID=Physo132185;Parent=Physo132185;rank=11 scaffold_19 . exon 703824 704038 . - . ID=Physo132185.11;Parent=Physo132185;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_19 . CDS 704109 704501 . - 0 ID=Physo132185;Parent=Physo132185;rank=10 scaffold_19 . exon 704109 704501 . - . ID=Physo132185.10;Parent=Physo132185;constitutive=1;rank=10 scaffold_19 . CDS 704804 704914 . - 0 ID=Physo132185;Parent=Physo132185;rank=9 scaffold_19 . exon 704804 704914 . - . ID=Physo132185.9;Parent=Physo132185;constitutive=1;rank=9 scaffold_19 . CDS 704977 705032 . - 0 ID=Physo132185;Parent=Physo132185;rank=8 scaffold_19 . exon 704977 705032 . - . ID=Physo132185.8;Parent=Physo132185;constitutive=1;ensembl_phase=1;rank=8 scaffold_19 . CDS 705100 705450 . - 0 ID=Physo132185;Parent=Physo132185;rank=7 scaffold_19 . exon 705100 705450 . - . ID=Physo132185.7;Parent=Physo132185;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_19 . CDS 705509 705533 . - 0 ID=Physo132185;Parent=Physo132185;rank=6 scaffold_19 . exon 705509 705533 . - . ID=Physo132185.6;Parent=Physo132185;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_19 . CDS 705618 705687 . - 0 ID=Physo132185;Parent=Physo132185;rank=5 scaffold_19 . exon 705618 705687 . - . ID=Physo132185.5;Parent=Physo132185;constitutive=1;ensembl_phase=2;rank=5 scaffold_19 . CDS 705818 706374 . - 0 ID=Physo132185;Parent=Physo132185;rank=4 scaffold_19 . exon 705818 706374 . - . ID=Physo132185.4;Parent=Physo132185;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_19 . CDS 706460 706624 . - 0 ID=Physo132185;Parent=Physo132185;rank=3 scaffold_19 . exon 706460 706624 . - . ID=Physo132185.3;Parent=Physo132185;constitutive=1;rank=3 scaffold_19 . CDS 706700 707077 . - 0 ID=Physo132185;Parent=Physo132185;rank=2 scaffold_19 . exon 706700 707077 . - . ID=Physo132185.2;Parent=Physo132185;constitutive=1;rank=2 scaffold_19 . CDS 707157 707417 . - 0 ID=Physo132185;Parent=Physo132185;rank=1 scaffold_19 . biological_region 707212 707217 0.999 + . logic_name=eponine scaffold_19 . biological_region 707605 707606 0.999 + . logic_name=eponine scaffold_19 . biological_region 708388 708388 0.999 + . logic_name=eponine scaffold_19 . biological_region 709093 709093 0.999 + . logic_name=eponine scaffold_19 . biological_region 709112 709115 0.999 + . logic_name=eponine scaffold_19 . biological_region 709719 709720 0.999 + . logic_name=eponine scaffold_19 . biological_region 709812 709813 0.999 + . logic_name=eponine scaffold_19 . biological_region 712389 712393 0.999 - . logic_name=eponine scaffold_19 . biological_region 713775 713778 0.999 + . logic_name=eponine scaffold_19 . biological_region 715151 715155 0.999 + . logic_name=eponine scaffold_19 . biological_region 715214 715222 0.999 + . logic_name=eponine scaffold_19 . biological_region 715315 715317 0.999 - . logic_name=eponine scaffold_19 . biological_region 715333 715338 0.999 - . logic_name=eponine scaffold_19 . biological_region 715366 715370 0.999 - . logic_name=eponine scaffold_19 . biological_region 716655 716658 0.999 + . logic_name=eponine scaffold_19 . biological_region 716683 716691 0.999 - . logic_name=eponine scaffold_19 . biological_region 716737 716737 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 711848 712981 . + . ID=Physo108610;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_190010;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 711848 712981 . + . ID=Physo108610;Parent=Physo108610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 711848 712981 . + 0 ID=Physo108610;Parent=Physo108610;rank=1 scaffold_19 . exon 711848 712981 . + . ID=Physo108610.1;Parent=Physo108610;constitutive=1;rank=1 scaffold_19 . exon 707157 707417 . - . ID=Physo132185.1;Parent=Physo132185;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 707624 710823 . + . ID=Physo132186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190136;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 707624 710823 . + . ID=Physo132186;Parent=Physo132186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 707624 707711 . + 0 ID=Physo132186;Parent=Physo132186;rank=1 scaffold_19 . exon 707624 707711 . + . ID=Physo132186.1;Parent=Physo132186;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 707752 707978 . + 0 ID=Physo132186;Parent=Physo132186;rank=2 scaffold_19 . exon 707752 707978 . + . ID=Physo132186.2;Parent=Physo132186;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 708005 708829 . + 0 ID=Physo132186;Parent=Physo132186;rank=3 scaffold_19 . exon 708005 708829 . + . ID=Physo132186.3;Parent=Physo132186;constitutive=1;rank=3 scaffold_19 . CDS 708866 709086 . + 0 ID=Physo132186;Parent=Physo132186;rank=4 scaffold_19 . exon 708866 709086 . + . ID=Physo132186.4;Parent=Physo132186;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_19 . CDS 709125 709386 . + 0 ID=Physo132186;Parent=Physo132186;rank=5 scaffold_19 . exon 709125 709386 . + . ID=Physo132186.5;Parent=Physo132186;constitutive=1;ensembl_phase=2;rank=5 scaffold_19 . CDS 709540 710823 . + 0 ID=Physo132186;Parent=Physo132186;rank=6 scaffold_19 . exon 709540 710823 . + . ID=Physo132186.6;Parent=Physo132186;constitutive=1;rank=6 scaffold_19 ensembl protein_coding_gene 715191 718215 . + . ID=Physo132188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190138;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 715191 718215 . + . ID=Physo132188;Parent=Physo132188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 715191 715729 . + 0 ID=Physo132188;Parent=Physo132188;rank=1 scaffold_19 . exon 715191 715729 . + . ID=Physo132188.1;Parent=Physo132188;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 716022 716860 . + 0 ID=Physo132188;Parent=Physo132188;rank=2 scaffold_19 . exon 716022 716860 . + . ID=Physo132188.2;Parent=Physo132188;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 717016 717334 . + 0 ID=Physo132188;Parent=Physo132188;rank=3 scaffold_19 . CDS 717412 717553 . + 0 ID=Physo132188;Parent=Physo132188;rank=4 scaffold_19 . CDS 717633 717709 . + 0 ID=Physo132188;Parent=Physo132188;rank=5 scaffold_19 . CDS 717784 717832 . + 0 ID=Physo132188;Parent=Physo132188;rank=6 scaffold_19 . CDS 717945 718087 . + 0 ID=Physo132188;Parent=Physo132188;rank=7 scaffold_19 . CDS 718164 718215 . + 0 ID=Physo132188;Parent=Physo132188;rank=8 scaffold_19 . repeat_region 719718 719744 . ? . description=dust scaffold_19 . repeat_region 719718 719744 . ? . description=trf scaffold_19 . repeat_region 720185 720200 . ? . description=dust scaffold_19 . repeat_region 725325 725333 . ? . description=dust scaffold_19 ensembl protein_coding_gene 722452 724578 . - . ID=Physo114249;biotype=protein_coding;external_name=estExt_Genewise1.C_190087;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 722452 724578 . - . ID=Physo114249;Parent=Physo114249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 722452 722901 . - 0 ID=Physo114249;Parent=Physo114249;rank=6 scaffold_19 . exon 722452 722901 . - . ID=Physo114249.6;Parent=Physo114249;constitutive=1;rank=6 scaffold_19 . CDS 722987 723247 . - 0 ID=Physo114249;Parent=Physo114249;rank=5 scaffold_19 . exon 722987 723247 . - . ID=Physo114249.5;Parent=Physo114249;constitutive=1;rank=5 scaffold_19 . CDS 723314 723800 . - 0 ID=Physo114249;Parent=Physo114249;rank=4 scaffold_19 . exon 723314 723800 . - . ID=Physo114249.4;Parent=Physo114249;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 723881 724080 . - 0 ID=Physo114249;Parent=Physo114249;rank=3 scaffold_19 . exon 723881 724080 . - . ID=Physo114249.3;Parent=Physo114249;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . CDS 724152 724403 . - 0 ID=Physo114249;Parent=Physo114249;rank=2 scaffold_19 . exon 724152 724403 . - . ID=Physo114249.2;Parent=Physo114249;constitutive=1;rank=2 scaffold_19 . CDS 724477 724533 . - 0 ID=Physo114249;Parent=Physo114249;rank=1 scaffold_19 . exon 724477 724578 . - . ID=Physo114249.1;Parent=Physo114249;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . exon 717016 717334 . + . ID=Physo132188.3;Parent=Physo132188;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_19 . exon 717412 717553 . + . ID=Physo132188.4;Parent=Physo132188;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . exon 717633 717709 . + . ID=Physo132188.5;Parent=Physo132188;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_19 . exon 717784 717832 . + . ID=Physo132188.6;Parent=Physo132188;constitutive=1;ensembl_phase=2;rank=6 scaffold_19 . exon 717945 718087 . + . ID=Physo132188.7;Parent=Physo132188;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_19 . exon 718164 718215 . + . ID=Physo132188.8;Parent=Physo132188;constitutive=1;ensembl_phase=2;rank=8 scaffold_19 ensembl protein_coding_gene 718258 722234 . - . ID=Physo132189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190139;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 718258 722234 . - . ID=Physo132189;Parent=Physo132189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 718258 718607 . - . ID=Physo132189.6;Parent=Physo132189;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_19 . CDS 718354 718607 . - 0 ID=Physo132189;Parent=Physo132189;rank=6 scaffold_19 . CDS 718696 718833 . - 0 ID=Physo132189;Parent=Physo132189;rank=5 scaffold_19 . exon 718696 718833 . - . ID=Physo132189.5;Parent=Physo132189;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_19 . CDS 718924 719654 . - 0 ID=Physo132189;Parent=Physo132189;rank=4 scaffold_19 . exon 718924 719654 . - . ID=Physo132189.4;Parent=Physo132189;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 719782 720169 . - 0 ID=Physo132189;Parent=Physo132189;rank=3 scaffold_19 . exon 719782 720169 . - . ID=Physo132189.3;Parent=Physo132189;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_19 . CDS 720262 721012 . - 0 ID=Physo132189;Parent=Physo132189;rank=2 scaffold_19 . exon 720262 721012 . - . ID=Physo132189.2;Parent=Physo132189;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 721080 722234 . - 0 ID=Physo132189;Parent=Physo132189;rank=1 scaffold_19 . exon 721080 722234 . - . ID=Physo132189.1;Parent=Physo132189;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 725145 726241 . - . ID=Physo132192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190142;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 725145 726241 . - . ID=Physo132192;Parent=Physo132192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 725145 725318 . - 0 ID=Physo132192;Parent=Physo132192;rank=5 scaffold_19 . exon 725145 725318 . - . ID=Physo132192.5;Parent=Physo132192;constitutive=1;rank=5 scaffold_19 . CDS 725389 725568 . - 0 ID=Physo132192;Parent=Physo132192;rank=4 scaffold_19 . exon 725389 725568 . - . ID=Physo132192.4;Parent=Physo132192;constitutive=1;rank=4 scaffold_19 . CDS 725649 725753 . - 0 ID=Physo132192;Parent=Physo132192;rank=3 scaffold_19 . exon 725649 725753 . - . ID=Physo132192.3;Parent=Physo132192;constitutive=1;rank=3 scaffold_19 . CDS 725832 725972 . - 0 ID=Physo132192;Parent=Physo132192;rank=2 scaffold_19 . exon 725832 725972 . - . ID=Physo132192.2;Parent=Physo132192;constitutive=1;rank=2 scaffold_19 . CDS 726041 726241 . - 0 ID=Physo132192;Parent=Physo132192;rank=1 scaffold_19 . exon 726041 726241 . - . ID=Physo132192.1;Parent=Physo132192;constitutive=1;rank=1 scaffold_19 . biological_region 730573 730575 0.999 - . logic_name=eponine scaffold_19 . biological_region 730936 730938 0.999 - . logic_name=eponine scaffold_19 . biological_region 734253 734254 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 726769 727281 . + . ID=Physo132193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190143;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 726769 727281 . + . ID=Physo132193;Parent=Physo132193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 726769 727281 . + 0 ID=Physo132193;Parent=Physo132193;rank=1 scaffold_19 . exon 726769 727281 . + . ID=Physo132193.1;Parent=Physo132193;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 729714 731507 . - . ID=Physo132194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190144;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 729714 731507 . - . ID=Physo132194;Parent=Physo132194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 729714 731251 . - 0 ID=Physo132194;Parent=Physo132194;rank=2 scaffold_19 . exon 729714 731251 . - . ID=Physo132194.2;Parent=Physo132194;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 731384 731507 . - 0 ID=Physo132194;Parent=Physo132194;rank=1 scaffold_19 . exon 731384 731507 . - . ID=Physo132194.1;Parent=Physo132194;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . repeat_region 737894 737902 . ? . description=dust scaffold_19 . repeat_region 738563 738572 . ? . description=dust scaffold_19 . repeat_region 743357 743400 . ? . description=trf scaffold_19 . repeat_region 745279 745343 . ? . description=trf scaffold_19 . repeat_region 745435 745515 . ? . description=trf scaffold_19 . repeat_region 746477 746496 . ? . description=trf scaffold_19 ensembl protein_coding_gene 744707 745968 . + . ID=Physo132195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190145;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 744707 745968 . + . ID=Physo132195;Parent=Physo132195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 744707 744886 . + . ID=Physo132195.1;Parent=Physo132195;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 744757 744886 . + 0 ID=Physo132195;Parent=Physo132195;rank=1 scaffold_19 . CDS 744953 745809 . + 0 ID=Physo132195;Parent=Physo132195;rank=2 scaffold_19 . exon 744953 745968 . + . ID=Physo132195.2;Parent=Physo132195;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_19 ensembl protein_coding_gene 746062 752896 . + . ID=Physo132196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190146;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 746062 752896 . + . ID=Physo132196;Parent=Physo132196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 746062 748452 . + 0 ID=Physo132196;Parent=Physo132196;rank=1 scaffold_19 . exon 746062 748452 . + . ID=Physo132196.1;Parent=Physo132196;constitutive=1;rank=1 scaffold_19 . CDS 748567 750534 . + 0 ID=Physo132196;Parent=Physo132196;rank=2 scaffold_19 . CDS 750648 751843 . + 0 ID=Physo132196;Parent=Physo132196;rank=3 scaffold_19 . CDS 752083 752137 . + 0 ID=Physo132196;Parent=Physo132196;rank=4 scaffold_19 . CDS 752251 752519 . + 0 ID=Physo132196;Parent=Physo132196;rank=5 scaffold_19 . CDS 752633 752792 . + 0 ID=Physo132196;Parent=Physo132196;rank=6 scaffold_19 . biological_region 746920 746921 0.999 + . logic_name=eponine scaffold_19 . biological_region 747005 747010 0.999 - . logic_name=eponine scaffold_19 . biological_region 748438 748443 0.999 + . logic_name=eponine scaffold_19 . biological_region 751350 751354 0.999 + . logic_name=eponine scaffold_19 . biological_region 751399 751401 0.999 + . logic_name=eponine scaffold_19 . biological_region 751434 751434 0.999 - . logic_name=eponine scaffold_19 . biological_region 751471 751474 0.999 + . logic_name=eponine scaffold_19 . biological_region 753376 753377 0.999 - . logic_name=eponine scaffold_19 . biological_region 753378 753378 0.999 + . logic_name=eponine scaffold_19 . biological_region 753468 753468 0.999 + . logic_name=eponine scaffold_19 . biological_region 753528 753531 0.999 + . logic_name=eponine scaffold_19 . biological_region 753545 753552 0.999 - . logic_name=eponine scaffold_19 . biological_region 753604 753609 0.999 + . logic_name=eponine scaffold_19 . biological_region 754030 754033 0.999 - . logic_name=eponine scaffold_19 . exon 748567 750534 . + . ID=Physo132196.2;Parent=Physo132196;constitutive=1;rank=2 scaffold_19 . exon 750648 751843 . + . ID=Physo132196.3;Parent=Physo132196;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . exon 752083 752137 . + . ID=Physo132196.4;Parent=Physo132196;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . exon 752251 752519 . + . ID=Physo132196.5;Parent=Physo132196;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_19 . exon 752633 752896 . + . ID=Physo132196.6;Parent=Physo132196;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_19 ensembl protein_coding_gene 753242 754196 . + . ID=Physo132197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190147;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 753242 754196 . + . ID=Physo132197;Parent=Physo132197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 753242 754196 . + . ID=Physo132197.1;Parent=Physo132197;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 753246 754196 . + 0 ID=Physo132197;Parent=Physo132197;rank=1 scaffold_19 ensembl protein_coding_gene 756059 756518 . - . ID=Physo132198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190148;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 756059 756518 . - . ID=Physo132198;Parent=Physo132198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 756059 756141 . - 0 ID=Physo132198;Parent=Physo132198;rank=2 scaffold_19 . exon 756059 756141 . - . ID=Physo132198.3;Parent=Physo132198;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 756202 756259 . - 0 ID=Physo132198;Parent=Physo132198;rank=1 scaffold_19 . exon 756202 756268 . - . ID=Physo132198.2;Parent=Physo132198;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_19 . exon 756344 756518 . - . ID=Physo132198.1;Parent=Physo132198;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_19 . repeat_region 757679 757688 . ? . description=dust scaffold_19 . repeat_region 757808 757829 . ? . description=trf scaffold_19 . repeat_region 761455 761484 . ? . description=dust scaffold_19 . repeat_region 761455 761484 . ? . description=trf scaffold_19 . repeat_region 761648 761697 . ? . description=trf scaffold_19 ensembl protein_coding_gene 763888 764598 . - . ID=Physo132199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190149;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 763888 764598 . - . ID=Physo132199;Parent=Physo132199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 763888 764117 . - . ID=Physo132199.4;Parent=Physo132199;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_19 . CDS 763941 764117 . - 0 ID=Physo132199;Parent=Physo132199;rank=4 scaffold_19 . CDS 764209 764299 . - 0 ID=Physo132199;Parent=Physo132199;rank=3 scaffold_19 . exon 764209 764299 . - . ID=Physo132199.3;Parent=Physo132199;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 764370 764419 . - 0 ID=Physo132199;Parent=Physo132199;rank=2 scaffold_19 . exon 764370 764419 . - . ID=Physo132199.2;Parent=Physo132199;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_19 . CDS 764507 764596 . - 0 ID=Physo132199;Parent=Physo132199;rank=1 scaffold_19 . exon 764507 764598 . - . ID=Physo132199.1;Parent=Physo132199;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 762440 763812 . + . ID=Physo156461;biotype=protein_coding;external_name=C_scaffold_19000026;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 762440 763812 . + . ID=Physo156461;Parent=Physo156461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 762440 762685 . + 0 ID=Physo156461;Parent=Physo156461;rank=1 scaffold_19 . exon 762440 762685 . + . ID=Physo156461.1;Parent=Physo156461;constitutive=1;rank=1 scaffold_19 . CDS 762713 763223 . + 0 ID=Physo156461;Parent=Physo156461;rank=2 scaffold_19 . exon 762713 763223 . + . ID=Physo156461.2;Parent=Physo156461;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_19 . CDS 763309 763397 . + 0 ID=Physo156461;Parent=Physo156461;rank=3 scaffold_19 . exon 763309 763397 . + . ID=Physo156461.3;Parent=Physo156461;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 . CDS 763471 763812 . + 0 ID=Physo156461;Parent=Physo156461;rank=4 scaffold_19 . exon 763471 763812 . + . ID=Physo156461.4;Parent=Physo156461;constitutive=1;rank=4 scaffold_19 ensembl protein_coding_gene 764785 768089 . + . ID=Physo156463;biotype=protein_coding;external_name=C_scaffold_19000028;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 764785 768089 . + . ID=Physo156463;Parent=Physo156463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 764785 765560 . + 0 ID=Physo156463;Parent=Physo156463;rank=1 scaffold_19 . exon 764785 765560 . + . ID=Physo156463.1;Parent=Physo156463;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 765588 766619 . + 0 ID=Physo156463;Parent=Physo156463;rank=2 scaffold_19 . exon 765588 766619 . + . ID=Physo156463.2;Parent=Physo156463;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_19 . CDS 766840 767014 . + 0 ID=Physo156463;Parent=Physo156463;rank=3 scaffold_19 . CDS 767089 767280 . + 0 ID=Physo156463;Parent=Physo156463;rank=4 scaffold_19 . CDS 767345 767632 . + 0 ID=Physo156463;Parent=Physo156463;rank=5 scaffold_19 . CDS 767705 767843 . + 0 ID=Physo156463;Parent=Physo156463;rank=6 scaffold_19 . CDS 767911 768089 . + 0 ID=Physo156463;Parent=Physo156463;rank=7 scaffold_19 . biological_region 766944 766946 0.999 + . logic_name=eponine scaffold_19 . biological_region 766978 766983 0.999 - . logic_name=eponine scaffold_19 . biological_region 767000 767000 0.999 - . logic_name=eponine scaffold_19 . biological_region 768842 768843 0.999 + . logic_name=eponine scaffold_19 . biological_region 768934 768936 0.999 + . logic_name=eponine scaffold_19 . biological_region 770197 770198 0.999 + . logic_name=eponine scaffold_19 . biological_region 772049 772050 0.999 + . logic_name=eponine scaffold_19 . biological_region 772477 772479 0.999 - . logic_name=eponine scaffold_19 . biological_region 772533 772536 0.999 + . logic_name=eponine scaffold_19 . biological_region 772821 772821 0.999 + . logic_name=eponine scaffold_19 . biological_region 773169 773170 0.999 - . logic_name=eponine scaffold_19 . biological_region 774281 774284 0.999 + . logic_name=eponine scaffold_19 . biological_region 775921 775924 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 773467 776997 . - . ID=Physo108612;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_190012;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 773467 776997 . - . ID=Physo108612;Parent=Physo108612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 773467 773688 . - 0 ID=Physo108612;Parent=Physo108612;rank=3 scaffold_19 . exon 773467 773688 . - . ID=Physo108612.3;Parent=Physo108612;constitutive=1;rank=3 scaffold_19 . CDS 773749 774564 . - 0 ID=Physo108612;Parent=Physo108612;rank=2 scaffold_19 . exon 773749 774564 . - . ID=Physo108612.2;Parent=Physo108612;constitutive=1;rank=2 scaffold_19 . CDS 774595 776997 . - 0 ID=Physo108612;Parent=Physo108612;rank=1 scaffold_19 . exon 774595 776997 . - . ID=Physo108612.1;Parent=Physo108612;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 768349 769677 . - . ID=Physo132202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190152;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 768349 769677 . - . ID=Physo132202;Parent=Physo132202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 768349 768657 . - 0 ID=Physo132202;Parent=Physo132202;rank=4 scaffold_19 . exon 768349 768657 . - . ID=Physo132202.4;Parent=Physo132202;constitutive=1;rank=4 scaffold_19 . CDS 768723 769187 . - 0 ID=Physo132202;Parent=Physo132202;rank=3 scaffold_19 . exon 768723 769187 . - . ID=Physo132202.3;Parent=Physo132202;constitutive=1;rank=3 scaffold_19 . CDS 769222 769398 . - 0 ID=Physo132202;Parent=Physo132202;rank=2 scaffold_19 . exon 769222 769398 . - . ID=Physo132202.2;Parent=Physo132202;constitutive=1;rank=2 scaffold_19 . CDS 769481 769633 . - 0 ID=Physo132202;Parent=Physo132202;rank=1 scaffold_19 . exon 769481 769677 . - . ID=Physo132202.1;Parent=Physo132202;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 772175 773174 . + . ID=Physo132203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190153;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 772175 773174 . + . ID=Physo132203;Parent=Physo132203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 772175 773174 . + . ID=Physo132203.1;Parent=Physo132203;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 772224 773174 . + 0 ID=Physo132203;Parent=Physo132203;rank=1 scaffold_19 . exon 766840 767014 . + . ID=Physo156463.3;Parent=Physo156463;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 . exon 767089 767280 . + . ID=Physo156463.4;Parent=Physo156463;constitutive=1;rank=4 scaffold_19 . exon 767345 767632 . + . ID=Physo156463.5;Parent=Physo156463;constitutive=1;rank=5 scaffold_19 . exon 767705 767843 . + . ID=Physo156463.6;Parent=Physo156463;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_19 . exon 767911 768089 . + . ID=Physo156463.7;Parent=Physo156463;constitutive=1;ensembl_phase=1;rank=7 scaffold_19 . repeat_region 777213 777220 . ? . description=dust scaffold_19 . repeat_region 779413 779440 . ? . description=trf scaffold_19 . repeat_region 779444 779511 . ? . description=trf scaffold_19 . repeat_region 779484 779511 . ? . description=trf scaffold_19 . repeat_region 780862 780938 . ? . description=dust scaffold_19 . repeat_region 780884 780938 . ? . description=trf scaffold_19 . repeat_region 784453 784460 . ? . description=dust scaffold_19 ensembl protein_coding_gene 778692 779136 . + . ID=Physo132205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190155;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 778692 779136 . + . ID=Physo132205;Parent=Physo132205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 778692 779136 . + . ID=Physo132205.1;Parent=Physo132205;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 778697 779056 . + 0 ID=Physo132205;Parent=Physo132205;rank=1 scaffold_19 ensembl protein_coding_gene 779275 780740 . - . ID=Physo132206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190156;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 779275 780740 . - . ID=Physo132206;Parent=Physo132206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 779275 779572 . - 0 ID=Physo132206;Parent=Physo132206;rank=6 scaffold_19 . exon 779275 779572 . - . ID=Physo132206.6;Parent=Physo132206;constitutive=1;ensembl_phase=2;rank=6 scaffold_19 . CDS 779653 779741 . - 0 ID=Physo132206;Parent=Physo132206;rank=5 scaffold_19 . exon 779653 779741 . - . ID=Physo132206.5;Parent=Physo132206;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_19 . CDS 779817 779940 . - 0 ID=Physo132206;Parent=Physo132206;rank=4 scaffold_19 . exon 779817 779940 . - . ID=Physo132206.4;Parent=Physo132206;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 780027 780151 . - 0 ID=Physo132206;Parent=Physo132206;rank=3 scaffold_19 . exon 780027 780151 . - . ID=Physo132206.3;Parent=Physo132206;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . CDS 780243 780436 . - 0 ID=Physo132206;Parent=Physo132206;rank=2 scaffold_19 . exon 780243 780436 . - . ID=Physo132206.2;Parent=Physo132206;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 780530 780740 . - 0 ID=Physo132206;Parent=Physo132206;rank=1 scaffold_19 . exon 780530 780740 . - . ID=Physo132206.1;Parent=Physo132206;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 781053 789815 . - . ID=Physo132207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190157;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 781053 789815 . - . ID=Physo132207;Parent=Physo132207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 781053 782648 . - 0 ID=Physo132207;Parent=Physo132207;rank=17 scaffold_19 . exon 781053 782648 . - . ID=Physo132207.17;Parent=Physo132207;constitutive=1;rank=17 scaffold_19 . CDS 782720 782926 . - 0 ID=Physo132207;Parent=Physo132207;rank=16 scaffold_19 . exon 782720 782926 . - . ID=Physo132207.16;Parent=Physo132207;constitutive=1;rank=16 scaffold_19 . CDS 783004 783649 . - 0 ID=Physo132207;Parent=Physo132207;rank=15 scaffold_19 . exon 783004 783649 . - . ID=Physo132207.15;Parent=Physo132207;constitutive=1;ensembl_phase=2;rank=15 scaffold_19 . CDS 783718 783896 . - 0 ID=Physo132207;Parent=Physo132207;rank=14 scaffold_19 . exon 783718 783896 . - . ID=Physo132207.14;Parent=Physo132207;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_19 . CDS 783967 784420 . - 0 ID=Physo132207;Parent=Physo132207;rank=13 scaffold_19 . exon 783967 784420 . - . ID=Physo132207.13;Parent=Physo132207;constitutive=1;ensembl_phase=2;rank=13 scaffold_19 . CDS 784482 784822 . - 0 ID=Physo132207;Parent=Physo132207;rank=12 scaffold_19 . exon 784482 784822 . - . ID=Physo132207.12;Parent=Physo132207;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_19 . CDS 784887 785264 . - 0 ID=Physo132207;Parent=Physo132207;rank=11 scaffold_19 . exon 784887 785264 . - . ID=Physo132207.11;Parent=Physo132207;constitutive=1;rank=11 scaffold_19 . CDS 785330 785467 . - 0 ID=Physo132207;Parent=Physo132207;rank=10 scaffold_19 . exon 785330 785467 . - . ID=Physo132207.10;Parent=Physo132207;constitutive=1;rank=10 scaffold_19 . CDS 785539 786095 . - 0 ID=Physo132207;Parent=Physo132207;rank=9 scaffold_19 . exon 785539 786095 . - . ID=Physo132207.9;Parent=Physo132207;constitutive=1;ensembl_phase=1;rank=9 scaffold_19 . CDS 786297 786430 . - 0 ID=Physo132207;Parent=Physo132207;rank=8 scaffold_19 . exon 786297 786430 . - . ID=Physo132207.8;Parent=Physo132207;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_19 . CDS 786497 786581 . - 0 ID=Physo132207;Parent=Physo132207;rank=7 scaffold_19 . CDS 786648 786924 . - 0 ID=Physo132207;Parent=Physo132207;rank=6 scaffold_19 . CDS 787103 787228 . - 0 ID=Physo132207;Parent=Physo132207;rank=5 scaffold_19 . CDS 787256 787645 . - 0 ID=Physo132207;Parent=Physo132207;rank=4 scaffold_19 . CDS 787716 787997 . - 0 ID=Physo132207;Parent=Physo132207;rank=3 scaffold_19 . CDS 788081 788317 . - 0 ID=Physo132207;Parent=Physo132207;rank=2 scaffold_19 . CDS 788394 789815 . - 0 ID=Physo132207;Parent=Physo132207;rank=1 scaffold_19 . biological_region 786763 786766 0.999 + . logic_name=eponine scaffold_19 . biological_region 790039 790045 0.999 - . logic_name=eponine scaffold_19 . biological_region 792743 792745 0.999 - . logic_name=eponine scaffold_19 . biological_region 796061 796068 0.999 - . logic_name=eponine scaffold_19 . exon 786497 786581 . - . ID=Physo132207.7;Parent=Physo132207;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_19 . exon 786648 786924 . - . ID=Physo132207.6;Parent=Physo132207;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_19 . exon 787103 787228 . - . ID=Physo132207.5;Parent=Physo132207;constitutive=1;rank=5 scaffold_19 . exon 787256 787645 . - . ID=Physo132207.4;Parent=Physo132207;constitutive=1;rank=4 scaffold_19 . exon 787716 787997 . - . ID=Physo132207.3;Parent=Physo132207;constitutive=1;rank=3 scaffold_19 . exon 788081 788317 . - . ID=Physo132207.2;Parent=Physo132207;constitutive=1;rank=2 scaffold_19 . exon 788394 789815 . - . ID=Physo132207.1;Parent=Physo132207;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 791423 792748 . + . ID=Physo132209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190159;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 791423 792748 . + . ID=Physo132209;Parent=Physo132209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 791423 792220 . + 0 ID=Physo132209;Parent=Physo132209;rank=1 scaffold_19 . exon 791423 792220 . + . ID=Physo132209.1;Parent=Physo132209;constitutive=1;rank=1 scaffold_19 . CDS 792308 792748 . + 0 ID=Physo132209;Parent=Physo132209;rank=2 scaffold_19 . exon 792308 792748 . + . ID=Physo132209.2;Parent=Physo132209;constitutive=1;rank=2 scaffold_19 ensembl protein_coding_gene 793001 794734 . - . ID=Physo132210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190160;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 793001 794734 . - . ID=Physo132210;Parent=Physo132210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 793001 794308 . - 0 ID=Physo132210;Parent=Physo132210;rank=2 scaffold_19 . exon 793001 794308 . - . ID=Physo132210.2;Parent=Physo132210;constitutive=1;rank=2 scaffold_19 . CDS 794390 794734 . - 0 ID=Physo132210;Parent=Physo132210;rank=1 scaffold_19 . exon 794390 794734 . - . ID=Physo132210.1;Parent=Physo132210;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 795114 796094 . + . ID=Physo132211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190161;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 795114 796094 . + . ID=Physo132211;Parent=Physo132211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 795114 795126 . + 0 ID=Physo132211;Parent=Physo132211;rank=1 scaffold_19 . exon 795114 795126 . + . ID=Physo132211.1;Parent=Physo132211;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 . CDS 795197 795275 . + 0 ID=Physo132211;Parent=Physo132211;rank=2 scaffold_19 . exon 795197 795275 . + . ID=Physo132211.2;Parent=Physo132211;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_19 . CDS 795337 795491 . + 0 ID=Physo132211;Parent=Physo132211;rank=3 scaffold_19 . exon 795337 795491 . + . ID=Physo132211.3;Parent=Physo132211;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_19 . CDS 795566 795616 . + 0 ID=Physo132211;Parent=Physo132211;rank=4 scaffold_19 . exon 795566 795616 . + . ID=Physo132211.4;Parent=Physo132211;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 795685 795766 . + 0 ID=Physo132211;Parent=Physo132211;rank=5 scaffold_19 . exon 795685 795766 . + . ID=Physo132211.5;Parent=Physo132211;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_19 . CDS 795830 796094 . + 0 ID=Physo132211;Parent=Physo132211;rank=6 scaffold_19 . exon 795830 796094 . + . ID=Physo132211.6;Parent=Physo132211;constitutive=1;ensembl_phase=2;rank=6 scaffold_19 ensembl protein_coding_gene 796268 797309 . + . ID=Physo132212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190162;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 796268 797309 . + . ID=Physo132212;Parent=Physo132212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 796268 796908 . + 0 ID=Physo132212;Parent=Physo132212;rank=1 scaffold_19 . exon 796268 796908 . + . ID=Physo132212.1;Parent=Physo132212;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 796991 796992 . + 0 ID=Physo132212;Parent=Physo132212;rank=2 scaffold_19 . CDS 797083 797309 . + 0 ID=Physo132212;Parent=Physo132212;rank=3 scaffold_19 ensembl protein_coding_gene 789972 790945 . + . ID=Physo156469;biotype=protein_coding;external_name=C_scaffold_19000034;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 789972 790945 . + . ID=Physo156469;Parent=Physo156469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 789972 790168 . + 0 ID=Physo156469;Parent=Physo156469;rank=1 scaffold_19 . exon 789972 790168 . + . ID=Physo156469.1;Parent=Physo156469;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 790250 790298 . + 0 ID=Physo156469;Parent=Physo156469;rank=2 scaffold_19 . exon 790250 790298 . + . ID=Physo156469.2;Parent=Physo156469;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 790380 790598 . + 0 ID=Physo156469;Parent=Physo156469;rank=3 scaffold_19 . exon 790380 790598 . + . ID=Physo156469.3;Parent=Physo156469;constitutive=1;rank=3 scaffold_19 . CDS 790658 790763 . + 0 ID=Physo156469;Parent=Physo156469;rank=4 scaffold_19 . exon 790658 790763 . + . ID=Physo156469.4;Parent=Physo156469;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_19 . CDS 790851 790945 . + 0 ID=Physo156469;Parent=Physo156469;rank=5 scaffold_19 . exon 790851 790945 . + . ID=Physo156469.5;Parent=Physo156469;constitutive=1;ensembl_phase=1;rank=5 scaffold_19 . repeat_region 802485 802546 . ? . description=trf scaffold_19 . repeat_region 805140 805155 . ? . description=dust scaffold_19 ensembl protein_coding_gene 805773 806108 . + . ID=Physo114281;biotype=protein_coding;external_name=estExt_Genewise1.C_190119;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 805773 806108 . + . ID=Physo114281;Parent=Physo114281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 805773 806108 . + . ID=Physo114281.1;Parent=Physo114281;constitutive=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 805821 806108 . + 0 ID=Physo114281;Parent=Physo114281;rank=1 scaffold_19 . exon 796991 796992 . + . ID=Physo132212.2;Parent=Physo132212;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_19 . exon 797083 797309 . + . ID=Physo132212.3;Parent=Physo132212;constitutive=1;ensembl_phase=1;rank=3 scaffold_19 ensembl protein_coding_gene 798245 800043 . - . ID=Physo132213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190163;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 798245 800043 . - . ID=Physo132213;Parent=Physo132213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 798245 798266 . - 0 ID=Physo132213;Parent=Physo132213;rank=2 scaffold_19 . exon 798245 798266 . - . ID=Physo132213.2;Parent=Physo132213;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 798320 800043 . - 0 ID=Physo132213;Parent=Physo132213;rank=1 scaffold_19 . exon 798320 800043 . - . ID=Physo132213.1;Parent=Physo132213;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 ensembl protein_coding_gene 800191 801604 . + . ID=Physo132214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190164;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 800191 801604 . + . ID=Physo132214;Parent=Physo132214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 800191 800507 . + . ID=Physo132214.1;Parent=Physo132214;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 800210 800507 . + 0 ID=Physo132214;Parent=Physo132214;rank=1 scaffold_19 . CDS 800595 800689 . + 0 ID=Physo132214;Parent=Physo132214;rank=2 scaffold_19 . exon 800595 800689 . + . ID=Physo132214.2;Parent=Physo132214;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 800835 800958 . + 0 ID=Physo132214;Parent=Physo132214;rank=3 scaffold_19 . exon 800835 800958 . + . ID=Physo132214.3;Parent=Physo132214;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_19 . CDS 801037 801206 . + 0 ID=Physo132214;Parent=Physo132214;rank=4 scaffold_19 . exon 801037 801206 . + . ID=Physo132214.4;Parent=Physo132214;constitutive=1;ensembl_phase=1;rank=4 scaffold_19 . CDS 801302 801604 . + 0 ID=Physo132214;Parent=Physo132214;rank=5 scaffold_19 . exon 801302 801604 . + . ID=Physo132214.5;Parent=Physo132214;constitutive=1;rank=5 scaffold_19 ensembl protein_coding_gene 801769 802439 . - . ID=Physo132215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190165;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 801769 802439 . - . ID=Physo132215;Parent=Physo132215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 801769 802214 . - . ID=Physo132215.2;Parent=Physo132215;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_19 . CDS 801854 802214 . - 0 ID=Physo132215;Parent=Physo132215;rank=2 scaffold_19 . CDS 802334 802419 . - 0 ID=Physo132215;Parent=Physo132215;rank=1 scaffold_19 . exon 802334 802439 . - . ID=Physo132215.1;Parent=Physo132215;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_19 . biological_region 809205 809210 0.999 - . logic_name=eponine scaffold_19 . biological_region 809266 809268 0.999 - . logic_name=eponine scaffold_19 . biological_region 809506 809509 0.999 + . logic_name=eponine scaffold_19 . biological_region 809524 809528 0.999 - . logic_name=eponine scaffold_19 . biological_region 811081 811082 0.999 + . logic_name=eponine scaffold_19 . biological_region 811127 811128 0.999 + . logic_name=eponine scaffold_19 . biological_region 811181 811184 0.999 - . logic_name=eponine scaffold_19 . biological_region 811812 811814 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 808991 812007 . + . ID=Physo132216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190166;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 808991 812007 . + . ID=Physo132216;Parent=Physo132216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 808991 809550 . + 0 ID=Physo132216;Parent=Physo132216;rank=1 scaffold_19 . exon 808991 809550 . + . ID=Physo132216.1;Parent=Physo132216;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 809682 809877 . + 0 ID=Physo132216;Parent=Physo132216;rank=2 scaffold_19 . exon 809682 809877 . + . ID=Physo132216.2;Parent=Physo132216;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 810020 810198 . + 0 ID=Physo132216;Parent=Physo132216;rank=3 scaffold_19 . exon 810020 810198 . + . ID=Physo132216.3;Parent=Physo132216;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . CDS 810292 810361 . + 0 ID=Physo132216;Parent=Physo132216;rank=4 scaffold_19 . exon 810292 810361 . + . ID=Physo132216.4;Parent=Physo132216;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . CDS 810793 811343 . + 0 ID=Physo132216;Parent=Physo132216;rank=5 scaffold_19 . exon 810793 811343 . + . ID=Physo132216.5;Parent=Physo132216;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_19 . CDS 811370 811904 . + 0 ID=Physo132216;Parent=Physo132216;rank=6 scaffold_19 . exon 811370 812007 . + . ID=Physo132216.6;Parent=Physo132216;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_19 ensembl protein_coding_gene 812237 813563 . - . ID=Physo132217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190167;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 812237 813563 . - . ID=Physo132217;Parent=Physo132217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 812237 812515 . - 0 ID=Physo132217;Parent=Physo132217;rank=3 scaffold_19 . exon 812237 812515 . - . ID=Physo132217.3;Parent=Physo132217;constitutive=1;rank=3 scaffold_19 . CDS 812861 813221 . - 0 ID=Physo132217;Parent=Physo132217;rank=2 scaffold_19 . exon 812861 813221 . - . ID=Physo132217.2;Parent=Physo132217;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 813289 813533 . - 0 ID=Physo132217;Parent=Physo132217;rank=1 scaffold_19 . exon 813289 813563 . - . ID=Physo132217.1;Parent=Physo132217;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_19 ensembl protein_coding_gene 815296 816558 . - . ID=Physo132218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190168;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 815296 816558 . - . ID=Physo132218;Parent=Physo132218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 815296 816558 . - 0 ID=Physo132218;Parent=Physo132218;rank=1 scaffold_19 . exon 815296 816558 . - . ID=Physo132218.1;Parent=Physo132218;constitutive=1;rank=1 scaffold_19 . repeat_region 818976 822500 . ? . description=dust scaffold_19 . repeat_region 823505 823884 . ? . description=dust scaffold_19 . biological_region 832451 832452 0.999 + . logic_name=eponine scaffold_19 . biological_region 835693 835694 0.999 + . logic_name=eponine scaffold_19 . biological_region 835808 835812 0.999 - . logic_name=eponine scaffold_19 ensembl protein_coding_gene 835054 837861 . + . ID=Physo132219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190169;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 835054 837861 . + . ID=Physo132219;Parent=Physo132219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 835054 835551 . + 0 ID=Physo132219;Parent=Physo132219;rank=1 scaffold_19 . exon 835054 835551 . + . ID=Physo132219.1;Parent=Physo132219;constitutive=1;rank=1 scaffold_19 . CDS 835634 835831 . + 0 ID=Physo132219;Parent=Physo132219;rank=2 scaffold_19 . exon 835634 835831 . + . ID=Physo132219.2;Parent=Physo132219;constitutive=1;rank=2 scaffold_19 . CDS 835987 836387 . + 0 ID=Physo132219;Parent=Physo132219;rank=3 scaffold_19 . exon 835987 836387 . + . ID=Physo132219.3;Parent=Physo132219;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_19 . CDS 836700 836871 . + 0 ID=Physo132219;Parent=Physo132219;rank=4 scaffold_19 . CDS 837205 837861 . + 0 ID=Physo132219;Parent=Physo132219;rank=5 scaffold_19 . repeat_region 836381 837697 . + . description=GypsyPi-1c_I-int scaffold_19 . repeat_region 839133 839811 . + . description=GypsyPi-1c_I-int scaffold_19 . repeat_region 843319 843328 . ? . description=dust scaffold_19 . exon 836700 836871 . + . ID=Physo132219.4;Parent=Physo132219;constitutive=1;ensembl_phase=2;rank=4 scaffold_19 . exon 837205 837861 . + . ID=Physo132219.5;Parent=Physo132219;constitutive=1;rank=5 scaffold_19 ensembl protein_coding_gene 839385 840172 . + . ID=Physo132220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190170;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 839385 840172 . + . ID=Physo132220;Parent=Physo132220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 839385 839771 . + 0 ID=Physo132220;Parent=Physo132220;rank=1 scaffold_19 . exon 839385 839771 . + . ID=Physo132220.1;Parent=Physo132220;constitutive=1;rank=1 scaffold_19 . CDS 839926 840125 . + 0 ID=Physo132220;Parent=Physo132220;rank=2 scaffold_19 . exon 839926 840125 . + . ID=Physo132220.2;Parent=Physo132220;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_19 . CDS 840166 840172 . + 0 ID=Physo132220;Parent=Physo132220;rank=3 scaffold_19 . exon 840166 840172 . + . ID=Physo132220.3;Parent=Physo132220;constitutive=1;ensembl_phase=2;rank=3 scaffold_19 ensembl protein_coding_gene 840415 841942 . - . ID=Physo132221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190171;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 840415 841942 . - . ID=Physo132221;Parent=Physo132221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 840415 841237 . - 0 ID=Physo132221;Parent=Physo132221;rank=2 scaffold_19 . exon 840415 841237 . - . ID=Physo132221.2;Parent=Physo132221;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 841428 841942 . - 0 ID=Physo132221;Parent=Physo132221;rank=1 scaffold_19 . exon 841428 841942 . - . ID=Physo132221.1;Parent=Physo132221;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . biological_region 846777 846778 0.999 + . logic_name=eponine scaffold_19 . biological_region 855216 855219 0.999 + . logic_name=eponine scaffold_19 ensembl protein_coding_gene 846783 847977 . - . ID=Physo132222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190172;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 846783 847977 . - . ID=Physo132222;Parent=Physo132222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 846783 847903 . - 0 ID=Physo132222;Parent=Physo132222;rank=2 scaffold_19 . exon 846783 847903 . - . ID=Physo132222.2;Parent=Physo132222;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 . CDS 847944 847977 . - 0 ID=Physo132222;Parent=Physo132222;rank=1 scaffold_19 . exon 847944 847977 . - . ID=Physo132222.1;Parent=Physo132222;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_19 ensembl protein_coding_gene 849544 850199 . + . ID=Physo132223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190173;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 849544 850199 . + . ID=Physo132223;Parent=Physo132223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 849544 849554 . + 0 ID=Physo132223;Parent=Physo132223;rank=1 scaffold_19 . exon 849544 849554 . + . ID=Physo132223.1;Parent=Physo132223;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_19 . CDS 849737 849959 . + 0 ID=Physo132223;Parent=Physo132223;rank=2 scaffold_19 . exon 849737 849959 . + . ID=Physo132223.2;Parent=Physo132223;constitutive=1;ensembl_phase=2;rank=2 scaffold_19 . CDS 850029 850199 . + 0 ID=Physo132223;Parent=Physo132223;rank=3 scaffold_19 . exon 850029 850199 . + . ID=Physo132223.3;Parent=Physo132223;constitutive=1;rank=3 scaffold_19 ensembl protein_coding_gene 855027 855512 . - . ID=Physo132224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190174;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 855027 855512 . - . ID=Physo132224;Parent=Physo132224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 855027 855512 . - 0 ID=Physo132224;Parent=Physo132224;rank=1 scaffold_19 . exon 855027 855512 . - . ID=Physo132224.1;Parent=Physo132224;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 855960 858881 . + . ID=Physo132225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190175;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 855960 858881 . + . ID=Physo132225;Parent=Physo132225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 855960 858881 . + 0 ID=Physo132225;Parent=Physo132225;rank=1 scaffold_19 . exon 855960 858881 . + . ID=Physo132225.1;Parent=Physo132225;constitutive=1;rank=1 scaffold_19 . repeat_region 861642 861650 . ? . description=dust scaffold_19 . repeat_region 863782 863809 . ? . description=dust scaffold_19 . repeat_region 863782 863809 . ? . description=trf scaffold_19 . repeat_region 864323 864374 . ? . description=trf scaffold_19 ensembl protein_coding_gene 858946 859851 . + . ID=Physo132226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190176;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 858946 859851 . + . ID=Physo132226;Parent=Physo132226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . exon 858946 859265 . + . ID=Physo132226.1;Parent=Physo132226;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_19 . CDS 859094 859265 . + 0 ID=Physo132226;Parent=Physo132226;rank=1 scaffold_19 . CDS 859679 859851 . + 0 ID=Physo132226;Parent=Physo132226;rank=2 scaffold_19 . exon 859679 859851 . + . ID=Physo132226.2;Parent=Physo132226;constitutive=1;ensembl_phase=1;rank=2 scaffold_19 ensembl protein_coding_gene 861963 863417 . - . ID=Physo132227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190177;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 861963 863417 . - . ID=Physo132227;Parent=Physo132227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 861963 863417 . - 0 ID=Physo132227;Parent=Physo132227;rank=1 scaffold_19 . exon 861963 863417 . - . ID=Physo132227.1;Parent=Physo132227;constitutive=1;rank=1 scaffold_19 ensembl protein_coding_gene 865303 866028 . - . ID=Physo132228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_190178;logic_name=jgi_physo1_1 scaffold_19 ensembl transcript 865303 866028 . - . ID=Physo132228;Parent=Physo132228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_19 . CDS 865303 865881 . - 0 ID=Physo132228;Parent=Physo132228;rank=1 scaffold_19 . exon 865303 866028 . - . ID=Physo132228.1;Parent=Physo132228;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_18 1 893458 scaffold_18 . repeat_region 2 1190 . ? . description=trf scaffold_18 . repeat_region 3 380 . + . description=Polinton-1_PI scaffold_18 . repeat_region 385 880 . + . description=Polinton-1_PI scaffold_18 . repeat_region 885 15264 . + . description=Polinton-1_PI scaffold_18 . repeat_region 4250 4287 . ? . description=dust scaffold_18 . repeat_region 9215 9407 . ? . description=trf scaffold_18 . biological_region 16011 16014 0.999 - . logic_name=eponine scaffold_18 . biological_region 17715 17724 0.999 + . logic_name=eponine scaffold_18 . biological_region 17728 17733 0.999 - . logic_name=eponine scaffold_18 . biological_region 17747 17748 0.999 - . logic_name=eponine scaffold_18 . biological_region 17755 17757 0.999 + . logic_name=eponine scaffold_18 . biological_region 17771 17774 0.999 - . logic_name=eponine scaffold_18 . biological_region 18020 18020 0.999 - . logic_name=eponine scaffold_18 . biological_region 18042 18045 0.999 - . logic_name=eponine scaffold_18 . repeat_region 19673 19829 . + . description=(CAAAC)n scaffold_18 ensembl protein_coding_gene 15435 16925 . - . ID=Physo108594;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_180001;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 15435 16925 . - . ID=Physo108594;Parent=Physo108594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 15435 16925 . - . ID=Physo108594.1;Parent=Physo108594;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 15816 16916 . - 0 ID=Physo108594;Parent=Physo108594;rank=1 scaffold_18 ensembl protein_coding_gene 17933 18900 . + . ID=Physo131893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180002;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 17933 18900 . + . ID=Physo131893;Parent=Physo131893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 17933 18045 . + 0 ID=Physo131893;Parent=Physo131893;rank=1 scaffold_18 . exon 17933 18045 . + . ID=Physo131893.1;Parent=Physo131893;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 18120 18492 . + 0 ID=Physo131893;Parent=Physo131893;rank=2 scaffold_18 . exon 18120 18492 . + . ID=Physo131893.2;Parent=Physo131893;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 18562 18900 . + 0 ID=Physo131893;Parent=Physo131893;rank=3 scaffold_18 . exon 18562 18900 . + . ID=Physo131893.3;Parent=Physo131893;constitutive=1;rank=3 scaffold_18 . repeat_region 22960 23086 . ? . description=trf scaffold_18 . repeat_region 22960 23086 . ? . description=trf scaffold_18 . repeat_region 23458 23491 . ? . description=trf scaffold_18 . repeat_region 26935 27017 . ? . description=trf scaffold_18 ensembl protein_coding_gene 25319 26624 . + . ID=Physo131894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180003;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 25319 26624 . + . ID=Physo131894;Parent=Physo131894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 25319 25563 . + 0 ID=Physo131894;Parent=Physo131894;rank=1 scaffold_18 . exon 25319 25563 . + . ID=Physo131894.1;Parent=Physo131894;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 25624 25984 . + 0 ID=Physo131894;Parent=Physo131894;rank=2 scaffold_18 . exon 25624 25984 . + . ID=Physo131894.2;Parent=Physo131894;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 26064 26624 . + 0 ID=Physo131894;Parent=Physo131894;rank=3 scaffold_18 . exon 26064 26624 . + . ID=Physo131894.3;Parent=Physo131894;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 26861 28120 . - . ID=Physo131895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180004;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 26861 28120 . - . ID=Physo131895;Parent=Physo131895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 26861 28120 . - 0 ID=Physo131895;Parent=Physo131895;rank=1 scaffold_18 . exon 26861 28120 . - . ID=Physo131895.1;Parent=Physo131895;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 28675 29983 . - . ID=Physo131896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180005;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 28675 29983 . - . ID=Physo131896;Parent=Physo131896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 28675 29983 . - . ID=Physo131896.1;Parent=Physo131896;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_18 . CDS 28826 29983 . - 0 ID=Physo131896;Parent=Physo131896;rank=1 scaffold_18 . biological_region 30038 30040 0.999 - . logic_name=eponine scaffold_18 . repeat_region 30677 30685 . ? . description=dust scaffold_18 ensembl protein_coding_gene 37252 38892 . - . ID=Physo131897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180006;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 37252 38892 . - . ID=Physo131897;Parent=Physo131897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 37252 38892 . - 0 ID=Physo131897;Parent=Physo131897;rank=1 scaffold_18 . exon 37252 38892 . - . ID=Physo131897.1;Parent=Physo131897;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 39451 41051 . - . ID=Physo131898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180007;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 39451 41051 . - . ID=Physo131898;Parent=Physo131898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 39451 40115 . - 0 ID=Physo131898;Parent=Physo131898;rank=2 scaffold_18 . exon 39451 40115 . - . ID=Physo131898.2;Parent=Physo131898;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 40220 41051 . - 0 ID=Physo131898;Parent=Physo131898;rank=1 scaffold_18 . repeat_region 40944 40988 . ? . description=trf scaffold_18 . repeat_region 44613 44636 . ? . description=trf scaffold_18 . exon 40220 41051 . - . ID=Physo131898.1;Parent=Physo131898;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 42311 43823 . + . ID=Physo131899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180008;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 42311 43823 . + . ID=Physo131899;Parent=Physo131899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 42311 42598 . + 0 ID=Physo131899;Parent=Physo131899;rank=1 scaffold_18 . exon 42311 42598 . + . ID=Physo131899.1;Parent=Physo131899;constitutive=1;rank=1 scaffold_18 . CDS 42645 43823 . + 0 ID=Physo131899;Parent=Physo131899;rank=2 scaffold_18 . exon 42645 43823 . + . ID=Physo131899.2;Parent=Physo131899;constitutive=1;rank=2 scaffold_18 ensembl protein_coding_gene 44459 45504 . - . ID=Physo131900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180009;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 44459 45504 . - . ID=Physo131900;Parent=Physo131900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 44459 44830 . - . ID=Physo131900.3;Parent=Physo131900;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_18 . CDS 44810 44830 . - 0 ID=Physo131900;Parent=Physo131900;rank=3 scaffold_18 . CDS 44865 45231 . - 0 ID=Physo131900;Parent=Physo131900;rank=2 scaffold_18 . exon 44865 45231 . - . ID=Physo131900.2;Parent=Physo131900;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 45365 45504 . - 0 ID=Physo131900;Parent=Physo131900;rank=1 scaffold_18 . exon 45365 45504 . - . ID=Physo131900.1;Parent=Physo131900;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 46219 48652 . - . ID=Physo131901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180010;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 46219 48652 . - . ID=Physo131901;Parent=Physo131901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 46219 46879 . - 0 ID=Physo131901;Parent=Physo131901;rank=4 scaffold_18 . exon 46219 46879 . - . ID=Physo131901.4;Parent=Physo131901;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 47023 47233 . - 0 ID=Physo131901;Parent=Physo131901;rank=3 scaffold_18 . exon 47023 47233 . - . ID=Physo131901.3;Parent=Physo131901;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 47258 47699 . - 0 ID=Physo131901;Parent=Physo131901;rank=2 scaffold_18 . exon 47258 47699 . - . ID=Physo131901.2;Parent=Physo131901;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 47834 48652 . - 0 ID=Physo131901;Parent=Physo131901;rank=1 scaffold_18 . exon 47834 48652 . - . ID=Physo131901.1;Parent=Physo131901;constitutive=1;rank=1 scaffold_18 . biological_region 53542 53544 0.999 + . logic_name=eponine scaffold_18 . repeat_region 55669 55906 . - . description=GypsyPi-1c_LTR scaffold_18 . biological_region 58181 58182 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 54820 55086 . + . ID=Physo114144;biotype=protein_coding;external_name=estExt_Genewise1.C_180062;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 54820 55086 . + . ID=Physo114144;Parent=Physo114144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 54820 55086 . + . ID=Physo114144.1;Parent=Physo114144;constitutive=1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 54859 55086 . + 0 ID=Physo114144;Parent=Physo114144;rank=1 scaffold_18 ensembl protein_coding_gene 51789 54799 . + . ID=Physo131902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180011;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 51789 54799 . + . ID=Physo131902;Parent=Physo131902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 51789 52276 . + 0 ID=Physo131902;Parent=Physo131902;rank=1 scaffold_18 . exon 51789 52276 . + . ID=Physo131902.1;Parent=Physo131902;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 52324 52467 . + 0 ID=Physo131902;Parent=Physo131902;rank=2 scaffold_18 . exon 52324 52467 . + . ID=Physo131902.2;Parent=Physo131902;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 52729 54799 . + 0 ID=Physo131902;Parent=Physo131902;rank=3 scaffold_18 . exon 52729 54799 . + . ID=Physo131902.3;Parent=Physo131902;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 ensembl protein_coding_gene 57019 59358 . - . ID=Physo131903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180012;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 57019 59358 . - . ID=Physo131903;Parent=Physo131903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 57019 59358 . - 0 ID=Physo131903;Parent=Physo131903;rank=1 scaffold_18 . exon 57019 59358 . - . ID=Physo131903.1;Parent=Physo131903;constitutive=1;rank=1 scaffold_18 . repeat_region 59767 59798 . ? . description=trf scaffold_18 . repeat_region 59767 59798 . ? . description=dust scaffold_18 . repeat_region 60779 60786 . ? . description=dust scaffold_18 . repeat_region 64426 64484 . ? . description=trf scaffold_18 ensembl protein_coding_gene 62349 63889 . - . ID=Physo108595;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_180002;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 62349 63889 . - . ID=Physo108595;Parent=Physo108595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 62349 62472 . - 0 ID=Physo108595;Parent=Physo108595;rank=7 scaffold_18 . exon 62349 62472 . - . ID=Physo108595.7;Parent=Physo108595;constitutive=1;ensembl_phase=2;rank=7 scaffold_18 . CDS 62539 62627 . - 0 ID=Physo108595;Parent=Physo108595;rank=6 scaffold_18 . exon 62539 62627 . - . ID=Physo108595.6;Parent=Physo108595;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_18 . CDS 62711 62774 . - 0 ID=Physo108595;Parent=Physo108595;rank=5 scaffold_18 . exon 62711 62774 . - . ID=Physo108595.5;Parent=Physo108595;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 62844 63240 . - 0 ID=Physo108595;Parent=Physo108595;rank=4 scaffold_18 . exon 62844 63240 . - . ID=Physo108595.4;Parent=Physo108595;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_18 . CDS 63328 63406 . - 0 ID=Physo108595;Parent=Physo108595;rank=3 scaffold_18 . exon 63328 63406 . - . ID=Physo108595.3;Parent=Physo108595;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 63490 63696 . - 0 ID=Physo108595;Parent=Physo108595;rank=2 scaffold_18 . exon 63490 63696 . - . ID=Physo108595.2;Parent=Physo108595;constitutive=1;rank=2 scaffold_18 . CDS 63833 63889 . - 0 ID=Physo108595;Parent=Physo108595;rank=1 scaffold_18 . exon 63833 63889 . - . ID=Physo108595.1;Parent=Physo108595;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 64163 65180 . + . ID=Physo131905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180014;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 64163 65180 . + . ID=Physo131905;Parent=Physo131905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 64163 65032 . + 0 ID=Physo131905;Parent=Physo131905;rank=1 scaffold_18 . exon 64163 65032 . + . ID=Physo131905.1;Parent=Physo131905;constitutive=1;rank=1 scaffold_18 . CDS 65142 65180 . + 0 ID=Physo131905;Parent=Physo131905;rank=2 scaffold_18 . exon 65142 65180 . + . ID=Physo131905.2;Parent=Physo131905;constitutive=1;rank=2 scaffold_18 ensembl protein_coding_gene 67140 68748 . + . ID=Physo131906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180015;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 67140 68748 . + . ID=Physo131906;Parent=Physo131906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 67140 67978 . + 0 ID=Physo131906;Parent=Physo131906;rank=1 scaffold_18 . exon 67140 67978 . + . ID=Physo131906.1;Parent=Physo131906;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 68006 68313 . + 0 ID=Physo131906;Parent=Physo131906;rank=2 scaffold_18 . exon 68006 68313 . + . ID=Physo131906.2;Parent=Physo131906;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 68684 68748 . + 0 ID=Physo131906;Parent=Physo131906;rank=3 scaffold_18 . exon 68684 68748 . + . ID=Physo131906.3;Parent=Physo131906;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 ensembl protein_coding_gene 74940 78750 . + . ID=Physo131907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180016;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 74940 78750 . + . ID=Physo131907;Parent=Physo131907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 74940 75098 . + 0 ID=Physo131907;Parent=Physo131907;rank=1 scaffold_18 . exon 74940 75098 . + . ID=Physo131907.1;Parent=Physo131907;constitutive=1;rank=1 scaffold_18 . CDS 75130 75484 . + 0 ID=Physo131907;Parent=Physo131907;rank=2 scaffold_18 . exon 75130 75484 . + . ID=Physo131907.2;Parent=Physo131907;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 75512 76204 . + 0 ID=Physo131907;Parent=Physo131907;rank=3 scaffold_18 . exon 75512 76204 . + . ID=Physo131907.3;Parent=Physo131907;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 76295 76714 . + 0 ID=Physo131907;Parent=Physo131907;rank=4 scaffold_18 . exon 76295 76714 . + . ID=Physo131907.4;Parent=Physo131907;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 76826 77321 . + 0 ID=Physo131907;Parent=Physo131907;rank=5 scaffold_18 . exon 76826 77321 . + . ID=Physo131907.5;Parent=Physo131907;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_18 . CDS 77448 77827 . + 0 ID=Physo131907;Parent=Physo131907;rank=6 scaffold_18 . exon 77448 77827 . + . ID=Physo131907.6;Parent=Physo131907;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 78311 78750 . + 0 ID=Physo131907;Parent=Physo131907;rank=7 scaffold_18 . exon 78311 78750 . + . ID=Physo131907.7;Parent=Physo131907;constitutive=1;ensembl_phase=1;rank=7 scaffold_18 . biological_region 82978 82980 0.999 - . logic_name=eponine scaffold_18 . biological_region 83033 83037 0.999 + . logic_name=eponine scaffold_18 . biological_region 87122 87126 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 82269 83411 . + . ID=Physo131908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180017;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 82269 83411 . + . ID=Physo131908;Parent=Physo131908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 82269 82495 . + 0 ID=Physo131908;Parent=Physo131908;rank=1 scaffold_18 . exon 82269 82495 . + . ID=Physo131908.1;Parent=Physo131908;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 82576 82672 . + 0 ID=Physo131908;Parent=Physo131908;rank=2 scaffold_18 . exon 82576 82672 . + . ID=Physo131908.2;Parent=Physo131908;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 82721 83324 . + 0 ID=Physo131908;Parent=Physo131908;rank=3 scaffold_18 . exon 82721 83324 . + . ID=Physo131908.3;Parent=Physo131908;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 83392 83411 . + 0 ID=Physo131908;Parent=Physo131908;rank=4 scaffold_18 . exon 83392 83411 . + . ID=Physo131908.4;Parent=Physo131908;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . repeat_region 96575 96582 . ? . description=dust scaffold_18 ensembl protein_coding_gene 97994 102066 . - . ID=Physo131909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180018;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 97994 102066 . - . ID=Physo131909;Parent=Physo131909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 97994 99969 . - 0 ID=Physo131909;Parent=Physo131909;rank=4 scaffold_18 . exon 97994 99969 . - . ID=Physo131909.4;Parent=Physo131909;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 100111 100861 . - 0 ID=Physo131909;Parent=Physo131909;rank=3 scaffold_18 . CDS 100910 101015 . - 0 ID=Physo131909;Parent=Physo131909;rank=2 scaffold_18 . CDS 101054 102066 . - 0 ID=Physo131909;Parent=Physo131909;rank=1 scaffold_18 . biological_region 99344 99345 0.999 - . logic_name=eponine scaffold_18 . biological_region 99346 99348 0.999 + . logic_name=eponine scaffold_18 . biological_region 101228 101229 0.999 - . logic_name=eponine scaffold_18 . biological_region 101319 101322 0.999 - . logic_name=eponine scaffold_18 . biological_region 105078 105079 0.999 + . logic_name=eponine scaffold_18 . exon 100111 100861 . - . ID=Physo131909.3;Parent=Physo131909;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . exon 100910 101015 . - . ID=Physo131909.2;Parent=Physo131909;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . exon 101054 102066 . - . ID=Physo131909.1;Parent=Physo131909;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 104632 108252 . + . ID=Physo131910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180019;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 104632 108252 . + . ID=Physo131910;Parent=Physo131910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 104632 104837 . + 0 ID=Physo131910;Parent=Physo131910;rank=1 scaffold_18 . exon 104632 104837 . + . ID=Physo131910.1;Parent=Physo131910;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 104923 105830 . + 0 ID=Physo131910;Parent=Physo131910;rank=2 scaffold_18 . exon 104923 105830 . + . ID=Physo131910.2;Parent=Physo131910;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 105905 106193 . + 0 ID=Physo131910;Parent=Physo131910;rank=3 scaffold_18 . exon 105905 106193 . + . ID=Physo131910.3;Parent=Physo131910;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 106238 106897 . + 0 ID=Physo131910;Parent=Physo131910;rank=4 scaffold_18 . exon 106238 106897 . + . ID=Physo131910.4;Parent=Physo131910;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 107004 107025 . + 0 ID=Physo131910;Parent=Physo131910;rank=5 scaffold_18 . exon 107004 107025 . + . ID=Physo131910.5;Parent=Physo131910;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 107252 108187 . + 0 ID=Physo131910;Parent=Physo131910;rank=6 scaffold_18 . exon 107252 108187 . + . ID=Physo131910.6;Parent=Physo131910;constitutive=1;rank=6 scaffold_18 . CDS 108223 108252 . + 0 ID=Physo131910;Parent=Physo131910;rank=7 scaffold_18 . exon 108223 108252 . + . ID=Physo131910.7;Parent=Physo131910;constitutive=1;rank=7 scaffold_18 ensembl protein_coding_gene 108561 112485 . - . ID=Physo131911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180020;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 108561 112485 . - . ID=Physo131911;Parent=Physo131911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 108561 109077 . - 0 ID=Physo131911;Parent=Physo131911;rank=4 scaffold_18 . exon 108561 109077 . - . ID=Physo131911.4;Parent=Physo131911;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 109459 111400 . - 0 ID=Physo131911;Parent=Physo131911;rank=3 scaffold_18 . CDS 111508 112116 . - 0 ID=Physo131911;Parent=Physo131911;rank=2 scaffold_18 . CDS 112245 112485 . - 0 ID=Physo131911;Parent=Physo131911;rank=1 scaffold_18 . repeat_region 117221 117249 . ? . description=trf scaffold_18 . repeat_region 118039 118054 . ? . description=dust scaffold_18 . repeat_region 118568 118614 . ? . description=trf scaffold_18 . exon 109459 111400 . - . ID=Physo131911.3;Parent=Physo131911;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . exon 111508 112116 . - . ID=Physo131911.2;Parent=Physo131911;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . exon 112245 112485 . - . ID=Physo131911.1;Parent=Physo131911;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 114432 115660 . - . ID=Physo131912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180021;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 114432 115660 . - . ID=Physo131912;Parent=Physo131912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 114432 114447 . - 0 ID=Physo131912;Parent=Physo131912;rank=2 scaffold_18 . exon 114432 114447 . - . ID=Physo131912.2;Parent=Physo131912;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 114747 115660 . - 0 ID=Physo131912;Parent=Physo131912;rank=1 scaffold_18 . exon 114747 115660 . - . ID=Physo131912.1;Parent=Physo131912;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 116210 116584 . + . ID=Physo131913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180022;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 116210 116584 . + . ID=Physo131913;Parent=Physo131913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 116210 116584 . + 0 ID=Physo131913;Parent=Physo131913;rank=1 scaffold_18 . exon 116210 116584 . + . ID=Physo131913.1;Parent=Physo131913;constitutive=1;rank=1 scaffold_18 . biological_region 125079 125082 0.999 + . logic_name=eponine scaffold_18 . biological_region 125172 125174 0.999 + . logic_name=eponine scaffold_18 . biological_region 125246 125246 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 124552 125115 . + . ID=Physo131914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180023;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 124552 125115 . + . ID=Physo131914;Parent=Physo131914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 124552 125115 . + 0 ID=Physo131914;Parent=Physo131914;rank=1 scaffold_18 . exon 124552 125115 . + . ID=Physo131914.1;Parent=Physo131914;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 126143 128016 . - . ID=Physo131915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180024;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 126143 128016 . - . ID=Physo131915;Parent=Physo131915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 126143 127094 . - 0 ID=Physo131915;Parent=Physo131915;rank=3 scaffold_18 . exon 126143 127094 . - . ID=Physo131915.3;Parent=Physo131915;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 127136 127212 . - 0 ID=Physo131915;Parent=Physo131915;rank=2 scaffold_18 . exon 127136 127212 . - . ID=Physo131915.2;Parent=Physo131915;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 127249 128016 . - 0 ID=Physo131915;Parent=Physo131915;rank=1 scaffold_18 . exon 127249 128016 . - . ID=Physo131915.1;Parent=Physo131915;constitutive=1;rank=1 scaffold_18 . repeat_region 132165 132530 . + . description=Gypsy-1-I_PI-int scaffold_18 . repeat_region 132528 134233 . + . description=Gypsy-1-I_PI-int scaffold_18 . repeat_region 135449 135456 . ? . description=dust scaffold_18 . repeat_region 138627 138637 . ? . description=dust scaffold_18 ensembl protein_coding_gene 136935 138623 . - . ID=Physo131916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180025;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 136935 138623 . - . ID=Physo131916;Parent=Physo131916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 136935 138623 . - . ID=Physo131916.1;Parent=Physo131916;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_18 . CDS 137070 138623 . - 0 ID=Physo131916;Parent=Physo131916;rank=1 scaffold_18 . biological_region 144276 144279 0.999 + . logic_name=eponine scaffold_18 . biological_region 148584 148586 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 145478 145906 . - . ID=Physo131917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180026;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 145478 145906 . - . ID=Physo131917;Parent=Physo131917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 145478 145906 . - 0 ID=Physo131917;Parent=Physo131917;rank=1 scaffold_18 . exon 145478 145906 . - . ID=Physo131917.1;Parent=Physo131917;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 147197 147709 . - . ID=Physo131918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180027;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 147197 147709 . - . ID=Physo131918;Parent=Physo131918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 147197 147709 . - 0 ID=Physo131918;Parent=Physo131918;rank=1 scaffold_18 . exon 147197 147709 . - . ID=Physo131918.1;Parent=Physo131918;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 148319 148672 . - . ID=Physo131919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180028;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 148319 148672 . - . ID=Physo131919;Parent=Physo131919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 148319 148672 . - 0 ID=Physo131919;Parent=Physo131919;rank=1 scaffold_18 . exon 148319 148672 . - . ID=Physo131919.1;Parent=Physo131919;constitutive=1;rank=1 scaffold_18 . repeat_region 156858 156866 . ? . description=dust scaffold_18 ensembl protein_coding_gene 152072 160093 . - . ID=Physo131921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180030;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 152072 160093 . - . ID=Physo131921;Parent=Physo131921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 152072 155548 . - . ID=Physo131921.9;Parent=Physo131921;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_18 . CDS 152399 155548 . - 0 ID=Physo131921;Parent=Physo131921;rank=9 scaffold_18 . CDS 155608 156846 . - 0 ID=Physo131921;Parent=Physo131921;rank=8 scaffold_18 . exon 155608 156846 . - . ID=Physo131921.8;Parent=Physo131921;constitutive=1;rank=8 scaffold_18 . CDS 156911 157010 . - 0 ID=Physo131921;Parent=Physo131921;rank=7 scaffold_18 . exon 156911 157010 . - . ID=Physo131921.7;Parent=Physo131921;constitutive=1;ensembl_phase=2;rank=7 scaffold_18 . CDS 157182 157309 . - 0 ID=Physo131921;Parent=Physo131921;rank=6 scaffold_18 . exon 157182 157309 . - . ID=Physo131921.6;Parent=Physo131921;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_18 . CDS 157374 157644 . - 0 ID=Physo131921;Parent=Physo131921;rank=5 scaffold_18 . exon 157374 157644 . - . ID=Physo131921.5;Parent=Physo131921;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 157669 157712 . - 0 ID=Physo131921;Parent=Physo131921;rank=4 scaffold_18 . exon 157669 157712 . - . ID=Physo131921.4;Parent=Physo131921;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . CDS 157845 158192 . - 0 ID=Physo131921;Parent=Physo131921;rank=3 scaffold_18 . exon 157845 158192 . - . ID=Physo131921.3;Parent=Physo131921;constitutive=1;rank=3 scaffold_18 . CDS 158254 159908 . - 0 ID=Physo131921;Parent=Physo131921;rank=2 scaffold_18 . exon 158254 159908 . - . ID=Physo131921.2;Parent=Physo131921;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 159985 160093 . - 0 ID=Physo131921;Parent=Physo131921;rank=1 scaffold_18 . biological_region 159742 159746 0.999 - . logic_name=eponine scaffold_18 . repeat_region 160800 160878 . + . description=Polinton-1_PI scaffold_18 . biological_region 162769 162773 0.999 + . logic_name=eponine scaffold_18 . biological_region 165882 165887 0.999 + . logic_name=eponine scaffold_18 . exon 159985 160093 . - . ID=Physo131921.1;Parent=Physo131921;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 164653 165658 . + . ID=Physo131923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180032;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 164653 165658 . + . ID=Physo131923;Parent=Physo131923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 164653 165555 . + 0 ID=Physo131923;Parent=Physo131923;rank=1 scaffold_18 . exon 164653 165658 . + . ID=Physo131923.1;Parent=Physo131923;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_18 ensembl protein_coding_gene 165903 166334 . + . ID=Physo131924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180033;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 165903 166334 . + . ID=Physo131924;Parent=Physo131924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 165903 166334 . + 0 ID=Physo131924;Parent=Physo131924;rank=1 scaffold_18 . exon 165903 166334 . + . ID=Physo131924.1;Parent=Physo131924;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 166585 167359 . - . ID=Physo131925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180034;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 166585 167359 . - . ID=Physo131925;Parent=Physo131925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 166585 166633 . - 0 ID=Physo131925;Parent=Physo131925;rank=5 scaffold_18 . exon 166585 166633 . - . ID=Physo131925.5;Parent=Physo131925;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 166708 166778 . - 0 ID=Physo131925;Parent=Physo131925;rank=4 scaffold_18 . exon 166708 166778 . - . ID=Physo131925.4;Parent=Physo131925;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . CDS 166950 167013 . - 0 ID=Physo131925;Parent=Physo131925;rank=3 scaffold_18 . exon 166950 167013 . - . ID=Physo131925.3;Parent=Physo131925;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 167085 167207 . - 0 ID=Physo131925;Parent=Physo131925;rank=2 scaffold_18 . exon 167085 167207 . - . ID=Physo131925.2;Parent=Physo131925;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 167295 167353 . - 0 ID=Physo131925;Parent=Physo131925;rank=1 scaffold_18 . exon 167295 167359 . - . ID=Physo131925.1;Parent=Physo131925;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_18 ensembl protein_coding_gene 160717 162878 . + . ID=Physo156406;biotype=protein_coding;external_name=C_scaffold_18000004;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 160717 162878 . + . ID=Physo156406;Parent=Physo156406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 160717 161311 . + 0 ID=Physo156406;Parent=Physo156406;rank=1 scaffold_18 . exon 160717 161311 . + . ID=Physo156406.1;Parent=Physo156406;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 161986 162878 . + 0 ID=Physo156406;Parent=Physo156406;rank=2 scaffold_18 . exon 161986 162878 . + . ID=Physo156406.2;Parent=Physo156406;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . repeat_region 174626 174633 . ? . description=dust scaffold_18 ensembl protein_coding_gene 169840 171268 . + . ID=Physo131926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180035;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 169840 171268 . + . ID=Physo131926;Parent=Physo131926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 169840 169967 . + . ID=Physo131926.1;Parent=Physo131926;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_18 . CDS 169867 169967 . + 0 ID=Physo131926;Parent=Physo131926;rank=1 scaffold_18 . CDS 170036 170177 . + 0 ID=Physo131926;Parent=Physo131926;rank=2 scaffold_18 . exon 170036 170177 . + . ID=Physo131926.2;Parent=Physo131926;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 170255 170293 . + 0 ID=Physo131926;Parent=Physo131926;rank=3 scaffold_18 . exon 170255 170293 . + . ID=Physo131926.3;Parent=Physo131926;constitutive=1;rank=3 scaffold_18 . CDS 170365 170413 . + 0 ID=Physo131926;Parent=Physo131926;rank=4 scaffold_18 . exon 170365 170413 . + . ID=Physo131926.4;Parent=Physo131926;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_18 . CDS 170488 170603 . + 0 ID=Physo131926;Parent=Physo131926;rank=5 scaffold_18 . exon 170488 170603 . + . ID=Physo131926.5;Parent=Physo131926;constitutive=1;ensembl_phase=1;rank=5 scaffold_18 . CDS 170665 170736 . + 0 ID=Physo131926;Parent=Physo131926;rank=6 scaffold_18 . exon 170665 170736 . + . ID=Physo131926.6;Parent=Physo131926;constitutive=1;rank=6 scaffold_18 . CDS 170819 170992 . + 0 ID=Physo131926;Parent=Physo131926;rank=7 scaffold_18 . exon 170819 170992 . + . ID=Physo131926.7;Parent=Physo131926;constitutive=1;rank=7 scaffold_18 . CDS 171071 171268 . + 0 ID=Physo131926;Parent=Physo131926;rank=8 scaffold_18 . exon 171071 171268 . + . ID=Physo131926.8;Parent=Physo131926;constitutive=1;rank=8 scaffold_18 ensembl protein_coding_gene 171361 173352 . - . ID=Physo131927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180036;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 171361 173352 . - . ID=Physo131927;Parent=Physo131927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 171361 173150 . - . ID=Physo131927.2;Parent=Physo131927;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_18 . CDS 171405 173150 . - 0 ID=Physo131927;Parent=Physo131927;rank=2 scaffold_18 . CDS 173227 173352 . - 0 ID=Physo131927;Parent=Physo131927;rank=1 scaffold_18 . exon 173227 173352 . - . ID=Physo131927.1;Parent=Physo131927;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 173540 175364 . - . ID=Physo131928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180037;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 173540 175364 . - . ID=Physo131928;Parent=Physo131928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 173540 173862 . - 0 ID=Physo131928;Parent=Physo131928;rank=6 scaffold_18 . exon 173540 173862 . - . ID=Physo131928.6;Parent=Physo131928;constitutive=1;ensembl_phase=1;rank=6 scaffold_18 . CDS 173936 173990 . - 0 ID=Physo131928;Parent=Physo131928;rank=5 scaffold_18 . exon 173936 173990 . - . ID=Physo131928.5;Parent=Physo131928;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_18 . CDS 174064 174465 . - 0 ID=Physo131928;Parent=Physo131928;rank=4 scaffold_18 . exon 174064 174465 . - . ID=Physo131928.4;Parent=Physo131928;constitutive=1;rank=4 scaffold_18 . CDS 174548 174584 . - 0 ID=Physo131928;Parent=Physo131928;rank=3 scaffold_18 . exon 174548 174584 . - . ID=Physo131928.3;Parent=Physo131928;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 174657 174806 . - 0 ID=Physo131928;Parent=Physo131928;rank=2 scaffold_18 . exon 174657 174806 . - . ID=Physo131928.2;Parent=Physo131928;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 174874 175364 . - 0 ID=Physo131928;Parent=Physo131928;rank=1 scaffold_18 . exon 174874 175364 . - . ID=Physo131928.1;Parent=Physo131928;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . biological_region 182751 182755 0.999 + . logic_name=eponine scaffold_18 . repeat_region 185909 186214 . - . description=GypsyPi-1c_LTR scaffold_18 . biological_region 186391 186394 0.999 - . logic_name=eponine scaffold_18 . repeat_region 186529 186575 . ? . description=trf scaffold_18 . biological_region 187264 187268 0.999 - . logic_name=eponine scaffold_18 . repeat_region 187382 187517 . ? . description=trf scaffold_18 . repeat_region 187758 187835 . - . description=GypsyPi-1c_I-int scaffold_18 . biological_region 188461 188463 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 180289 180783 . + . ID=Physo114155;biotype=protein_coding;external_name=estExt_Genewise1.C_180073;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 180289 180783 . + . ID=Physo114155;Parent=Physo114155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 180289 180783 . + . ID=Physo114155.1;Parent=Physo114155;constitutive=1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 180460 180783 . + 0 ID=Physo114155;Parent=Physo114155;rank=1 scaffold_18 ensembl protein_coding_gene 181020 182851 . - . ID=Physo131930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180039;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 181020 182851 . - . ID=Physo131930;Parent=Physo131930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 181020 181703 . - 0 ID=Physo131930;Parent=Physo131930;rank=6 scaffold_18 . exon 181020 181703 . - . ID=Physo131930.6;Parent=Physo131930;constitutive=1;rank=6 scaffold_18 . CDS 181777 182043 . - 0 ID=Physo131930;Parent=Physo131930;rank=5 scaffold_18 . exon 181777 182043 . - . ID=Physo131930.5;Parent=Physo131930;constitutive=1;rank=5 scaffold_18 . CDS 182104 182212 . - 0 ID=Physo131930;Parent=Physo131930;rank=4 scaffold_18 . exon 182104 182212 . - . ID=Physo131930.4;Parent=Physo131930;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 182277 182363 . - 0 ID=Physo131930;Parent=Physo131930;rank=3 scaffold_18 . exon 182277 182363 . - . ID=Physo131930.3;Parent=Physo131930;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . CDS 182431 182517 . - 0 ID=Physo131930;Parent=Physo131930;rank=2 scaffold_18 . exon 182431 182517 . - . ID=Physo131930.2;Parent=Physo131930;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 182598 182851 . - 0 ID=Physo131930;Parent=Physo131930;rank=1 scaffold_18 . exon 182598 182851 . - . ID=Physo131930.1;Parent=Physo131930;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 183330 184257 . + . ID=Physo131931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180040;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 183330 184257 . + . ID=Physo131931;Parent=Physo131931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 183330 183606 . + 0 ID=Physo131931;Parent=Physo131931;rank=1 scaffold_18 . exon 183330 183606 . + . ID=Physo131931.1;Parent=Physo131931;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 183712 183873 . + 0 ID=Physo131931;Parent=Physo131931;rank=2 scaffold_18 . exon 183712 183873 . + . ID=Physo131931.2;Parent=Physo131931;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 183980 184257 . + 0 ID=Physo131931;Parent=Physo131931;rank=3 scaffold_18 . exon 183980 184257 . + . ID=Physo131931.3;Parent=Physo131931;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 ensembl protein_coding_gene 191994 192254 . - . ID=Physo114161;biotype=protein_coding;external_name=estExt_Genewise1.C_180079;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 191994 192254 . - . ID=Physo114161;Parent=Physo114161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 191994 192215 . - 0 ID=Physo114161;Parent=Physo114161;rank=1 scaffold_18 . exon 191994 192254 . - . ID=Physo114161.1;Parent=Physo114161;constitutive=1;ensembl_phase=-1;rank=1 scaffold_18 ensembl protein_coding_gene 190081 190872 . - . ID=Physo131932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180041;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 190081 190872 . - . ID=Physo131932;Parent=Physo131932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 190081 190120 . - 0 ID=Physo131932;Parent=Physo131932;rank=3 scaffold_18 . exon 190081 190120 . - . ID=Physo131932.3;Parent=Physo131932;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 190161 190422 . - 0 ID=Physo131932;Parent=Physo131932;rank=2 scaffold_18 . exon 190161 190422 . - . ID=Physo131932.2;Parent=Physo131932;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 190608 190872 . - 0 ID=Physo131932;Parent=Physo131932;rank=1 scaffold_18 . exon 190608 190872 . - . ID=Physo131932.1;Parent=Physo131932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 194985 195690 . - . ID=Physo131933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180042;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 194985 195690 . - . ID=Physo131933;Parent=Physo131933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 194985 195016 . - 0 ID=Physo131933;Parent=Physo131933;rank=5 scaffold_18 . exon 194985 195016 . - . ID=Physo131933.5;Parent=Physo131933;constitutive=1;ensembl_phase=1;rank=5 scaffold_18 . CDS 195049 195162 . - 0 ID=Physo131933;Parent=Physo131933;rank=4 scaffold_18 . exon 195049 195162 . - . ID=Physo131933.4;Parent=Physo131933;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 195262 195358 . - 0 ID=Physo131933;Parent=Physo131933;rank=3 scaffold_18 . exon 195262 195358 . - . ID=Physo131933.3;Parent=Physo131933;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . CDS 195392 195505 . - 0 ID=Physo131933;Parent=Physo131933;rank=2 scaffold_18 . exon 195392 195505 . - . ID=Physo131933.2;Parent=Physo131933;constitutive=1;rank=2 scaffold_18 . CDS 195544 195690 . - 0 ID=Physo131933;Parent=Physo131933;rank=1 scaffold_18 . exon 195544 195690 . - . ID=Physo131933.1;Parent=Physo131933;constitutive=1;rank=1 scaffold_18 . repeat_region 201081 201128 . ? . description=trf scaffold_18 . repeat_region 201082 201140 . ? . description=trf scaffold_18 . biological_region 204627 204627 0.999 - . logic_name=eponine scaffold_18 . repeat_region 206774 206793 . ? . description=trf scaffold_18 . biological_region 208170 208172 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 202233 203780 . - . ID=Physo131934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180043;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 202233 203780 . - . ID=Physo131934;Parent=Physo131934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 202233 203780 . - 0 ID=Physo131934;Parent=Physo131934;rank=1 scaffold_18 . exon 202233 203780 . - . ID=Physo131934.1;Parent=Physo131934;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 204979 206469 . - . ID=Physo131935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180044;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 204979 206469 . - . ID=Physo131935;Parent=Physo131935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 204979 206469 . - 0 ID=Physo131935;Parent=Physo131935;rank=1 scaffold_18 . exon 204979 206469 . - . ID=Physo131935.1;Parent=Physo131935;constitutive=1;rank=1 scaffold_18 . repeat_region 213438 213487 . ? . description=dust scaffold_18 . repeat_region 213506 213526 . ? . description=dust scaffold_18 . repeat_region 216658 216702 . ? . description=dust scaffold_18 ensembl protein_coding_gene 209150 210593 . + . ID=Physo131936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180045;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 209150 210593 . + . ID=Physo131936;Parent=Physo131936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 209150 210106 . + 0 ID=Physo131936;Parent=Physo131936;rank=1 scaffold_18 . exon 209150 210106 . + . ID=Physo131936.1;Parent=Physo131936;constitutive=1;rank=1 scaffold_18 . CDS 210223 210468 . + 0 ID=Physo131936;Parent=Physo131936;rank=2 scaffold_18 . exon 210223 210468 . + . ID=Physo131936.2;Parent=Physo131936;constitutive=1;rank=2 scaffold_18 . CDS 210498 210593 . + 0 ID=Physo131936;Parent=Physo131936;rank=3 scaffold_18 . exon 210498 210593 . + . ID=Physo131936.3;Parent=Physo131936;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 210813 214044 . - . ID=Physo131937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180046;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 210813 214044 . - . ID=Physo131937;Parent=Physo131937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 210813 213008 . - 0 ID=Physo131937;Parent=Physo131937;rank=5 scaffold_18 . exon 210813 213008 . - . ID=Physo131937.5;Parent=Physo131937;constitutive=1;rank=5 scaffold_18 . CDS 213084 213158 . - 0 ID=Physo131937;Parent=Physo131937;rank=4 scaffold_18 . exon 213084 213158 . - . ID=Physo131937.4;Parent=Physo131937;constitutive=1;rank=4 scaffold_18 . CDS 213230 213288 . - 0 ID=Physo131937;Parent=Physo131937;rank=3 scaffold_18 . exon 213230 213288 . - . ID=Physo131937.3;Parent=Physo131937;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 213368 213443 . - 0 ID=Physo131937;Parent=Physo131937;rank=2 scaffold_18 . exon 213368 213443 . - . ID=Physo131937.2;Parent=Physo131937;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 213529 214044 . - 0 ID=Physo131937;Parent=Physo131937;rank=1 scaffold_18 . exon 213529 214044 . - . ID=Physo131937.1;Parent=Physo131937;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 214331 215509 . + . ID=Physo131938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180047;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 214331 215509 . + . ID=Physo131938;Parent=Physo131938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 214331 214351 . + 0 ID=Physo131938;Parent=Physo131938;rank=1 scaffold_18 . exon 214331 214351 . + . ID=Physo131938.1;Parent=Physo131938;constitutive=1;rank=1 scaffold_18 . CDS 214411 214465 . + 0 ID=Physo131938;Parent=Physo131938;rank=2 scaffold_18 . exon 214411 214465 . + . ID=Physo131938.2;Parent=Physo131938;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 214639 214687 . + 0 ID=Physo131938;Parent=Physo131938;rank=3 scaffold_18 . exon 214639 214687 . + . ID=Physo131938.3;Parent=Physo131938;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 214760 214892 . + 0 ID=Physo131938;Parent=Physo131938;rank=4 scaffold_18 . exon 214760 214892 . + . ID=Physo131938.4;Parent=Physo131938;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 215143 215216 . + 0 ID=Physo131938;Parent=Physo131938;rank=5 scaffold_18 . exon 215143 215216 . + . ID=Physo131938.5;Parent=Physo131938;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_18 . CDS 215277 215321 . + 0 ID=Physo131938;Parent=Physo131938;rank=6 scaffold_18 . exon 215277 215321 . + . ID=Physo131938.6;Parent=Physo131938;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_18 . CDS 215464 215509 . + 0 ID=Physo131938;Parent=Physo131938;rank=7 scaffold_18 . exon 215464 215509 . + . ID=Physo131938.7;Parent=Physo131938;constitutive=1;ensembl_phase=2;rank=7 scaffold_18 ensembl protein_coding_gene 216775 219129 . + . ID=Physo131939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180048;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 216775 219129 . + . ID=Physo131939;Parent=Physo131939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 216775 217221 . + . ID=Physo131939.1;Parent=Physo131939;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_18 . CDS 216779 217221 . + 0 ID=Physo131939;Parent=Physo131939;rank=1 scaffold_18 . CDS 217291 217845 . + 0 ID=Physo131939;Parent=Physo131939;rank=2 scaffold_18 . exon 217291 217845 . + . ID=Physo131939.2;Parent=Physo131939;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 217911 217929 . + 0 ID=Physo131939;Parent=Physo131939;rank=3 scaffold_18 . exon 217911 217929 . + . ID=Physo131939.3;Parent=Physo131939;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 218173 219129 . + 0 ID=Physo131939;Parent=Physo131939;rank=4 scaffold_18 . exon 218173 219129 . + . ID=Physo131939.4;Parent=Physo131939;constitutive=1;rank=4 scaffold_18 . biological_region 219652 219658 0.999 + . logic_name=eponine scaffold_18 . biological_region 220250 220254 0.999 - . logic_name=eponine scaffold_18 . biological_region 220639 220642 0.999 + . logic_name=eponine scaffold_18 . biological_region 220797 220804 0.999 - . logic_name=eponine scaffold_18 . biological_region 220852 220855 0.999 - . logic_name=eponine scaffold_18 . biological_region 220946 220948 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 219789 221417 . + . ID=Physo131940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180049;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 219789 221417 . + . ID=Physo131940;Parent=Physo131940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 219789 219823 . + 0 ID=Physo131940;Parent=Physo131940;rank=1 scaffold_18 . exon 219789 219823 . + . ID=Physo131940.1;Parent=Physo131940;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 220163 221417 . + 0 ID=Physo131940;Parent=Physo131940;rank=2 scaffold_18 . exon 220163 221417 . + . ID=Physo131940.2;Parent=Physo131940;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 ensembl protein_coding_gene 224986 228950 . - . ID=Physo131941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180050;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 224986 228950 . - . ID=Physo131941;Parent=Physo131941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 224986 225900 . - 0 ID=Physo131941;Parent=Physo131941;rank=8 scaffold_18 . exon 224986 225900 . - . ID=Physo131941.8;Parent=Physo131941;constitutive=1;rank=8 scaffold_18 . CDS 226253 226935 . - 0 ID=Physo131941;Parent=Physo131941;rank=7 scaffold_18 . exon 226253 226935 . - . ID=Physo131941.7;Parent=Physo131941;constitutive=1;ensembl_phase=1;rank=7 scaffold_18 . CDS 227000 227135 . - 0 ID=Physo131941;Parent=Physo131941;rank=6 scaffold_18 . exon 227000 227135 . - . ID=Physo131941.6;Parent=Physo131941;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_18 . CDS 227203 227461 . - 0 ID=Physo131941;Parent=Physo131941;rank=5 scaffold_18 . exon 227203 227461 . - . ID=Physo131941.5;Parent=Physo131941;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 227718 228441 . - 0 ID=Physo131941;Parent=Physo131941;rank=4 scaffold_18 . exon 227718 228441 . - . ID=Physo131941.4;Parent=Physo131941;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_18 . CDS 228524 228613 . - 0 ID=Physo131941;Parent=Physo131941;rank=3 scaffold_18 . CDS 228681 228726 . - 0 ID=Physo131941;Parent=Physo131941;rank=2 scaffold_18 . CDS 228804 228950 . - 0 ID=Physo131941;Parent=Physo131941;rank=1 scaffold_18 . repeat_region 230239 230247 . ? . description=dust scaffold_18 . repeat_region 231724 231732 . ? . description=dust scaffold_18 . repeat_region 236251 236258 . ? . description=dust scaffold_18 . exon 228524 228613 . - . ID=Physo131941.3;Parent=Physo131941;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . exon 228681 228726 . - . ID=Physo131941.2;Parent=Physo131941;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . exon 228804 228950 . - . ID=Physo131941.1;Parent=Physo131941;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 229224 229616 . + . ID=Physo131942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180051;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 229224 229616 . + . ID=Physo131942;Parent=Physo131942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 229224 229616 . + 0 ID=Physo131942;Parent=Physo131942;rank=1 scaffold_18 . exon 229224 229616 . + . ID=Physo131942.1;Parent=Physo131942;constitutive=1;rank=1 scaffold_18 . repeat_region 249330 249338 . ? . description=dust scaffold_18 . repeat_region 249774 251359 . ? . description=dust scaffold_18 . repeat_region 253111 253137 . ? . description=dust scaffold_18 . repeat_region 253111 253137 . ? . description=trf scaffold_18 . biological_region 253906 253907 0.999 + . logic_name=eponine scaffold_18 . biological_region 254221 254224 0.999 + . logic_name=eponine scaffold_18 . repeat_region 255629 255761 . ? . description=dust scaffold_18 ensembl protein_coding_gene 253195 254281 . + . ID=Physo156415;biotype=protein_coding;external_name=C_scaffold_18000013;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 253195 254281 . + . ID=Physo156415;Parent=Physo156415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 253195 253643 . + 0 ID=Physo156415;Parent=Physo156415;rank=1 scaffold_18 . exon 253195 253643 . + . ID=Physo156415.1;Parent=Physo156415;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 253717 253885 . + 0 ID=Physo156415;Parent=Physo156415;rank=2 scaffold_18 . exon 253717 253885 . + . ID=Physo156415.2;Parent=Physo156415;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 253940 254281 . + 0 ID=Physo156415;Parent=Physo156415;rank=3 scaffold_18 . exon 253940 254281 . + . ID=Physo156415.3;Parent=Physo156415;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 255139 260305 . + . ID=Physo156416;biotype=protein_coding;external_name=C_scaffold_18000014;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 255139 260305 . + . ID=Physo156416;Parent=Physo156416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 255139 255605 . + 0 ID=Physo156416;Parent=Physo156416;rank=1 scaffold_18 . exon 255139 255605 . + . ID=Physo156416.1;Parent=Physo156416;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 256052 256072 . + 0 ID=Physo156416;Parent=Physo156416;rank=2 scaffold_18 . exon 256052 256072 . + . ID=Physo156416.2;Parent=Physo156416;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 256994 257598 . + 0 ID=Physo156416;Parent=Physo156416;rank=3 scaffold_18 . exon 256994 257598 . + . ID=Physo156416.3;Parent=Physo156416;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 257873 258907 . + 0 ID=Physo156416;Parent=Physo156416;rank=4 scaffold_18 . exon 257873 258907 . + . ID=Physo156416.4;Parent=Physo156416;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 259034 259667 . + 0 ID=Physo156416;Parent=Physo156416;rank=5 scaffold_18 . CDS 259741 260305 . + 0 ID=Physo156416;Parent=Physo156416;rank=6 scaffold_18 ensembl protein_coding_gene 261163 262670 . + . ID=Physo131945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180054;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 261163 262670 . + . ID=Physo131945;Parent=Physo131945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 261163 262491 . + 0 ID=Physo131945;Parent=Physo131945;rank=1 scaffold_18 . exon 261163 262670 . + . ID=Physo131945.1;Parent=Physo131945;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_18 . exon 259034 259667 . + . ID=Physo156416.5;Parent=Physo156416;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_18 . exon 259741 260305 . + . ID=Physo156416.6;Parent=Physo156416;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 ensembl protein_coding_gene 264742 270328 . + . ID=Physo156418;biotype=protein_coding;external_name=C_scaffold_18000016;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 264742 270328 . + . ID=Physo156418;Parent=Physo156418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 264742 264875 . + 0 ID=Physo156418;Parent=Physo156418;rank=1 scaffold_18 . exon 264742 264875 . + . ID=Physo156418.1;Parent=Physo156418;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 265085 265216 . + 0 ID=Physo156418;Parent=Physo156418;rank=2 scaffold_18 . exon 265085 265216 . + . ID=Physo156418.2;Parent=Physo156418;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 265292 265432 . + 0 ID=Physo156418;Parent=Physo156418;rank=3 scaffold_18 . exon 265292 265432 . + . ID=Physo156418.3;Parent=Physo156418;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . CDS 265497 265693 . + 0 ID=Physo156418;Parent=Physo156418;rank=4 scaffold_18 . exon 265497 265693 . + . ID=Physo156418.4;Parent=Physo156418;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 266501 266618 . + 0 ID=Physo156418;Parent=Physo156418;rank=5 scaffold_18 . exon 266501 266618 . + . ID=Physo156418.5;Parent=Physo156418;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_18 . CDS 266720 268956 . + 0 ID=Physo156418;Parent=Physo156418;rank=6 scaffold_18 . exon 266720 268956 . + . ID=Physo156418.6;Parent=Physo156418;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 269053 269748 . + 0 ID=Physo156418;Parent=Physo156418;rank=7 scaffold_18 . CDS 269810 269901 . + 0 ID=Physo156418;Parent=Physo156418;rank=8 scaffold_18 . CDS 269978 270082 . + 0 ID=Physo156418;Parent=Physo156418;rank=9 scaffold_18 . CDS 270158 270328 . + 0 ID=Physo156418;Parent=Physo156418;rank=10 scaffold_18 . biological_region 271231 271234 0.999 + . logic_name=eponine scaffold_18 . repeat_region 272720 272826 . ? . description=trf scaffold_18 . repeat_region 273080 273132 . ? . description=trf scaffold_18 . repeat_region 273449 273492 . ? . description=trf scaffold_18 . repeat_region 274611 274618 . ? . description=dust scaffold_18 . repeat_region 276111 276118 . ? . description=dust scaffold_18 ensembl protein_coding_gene 271204 271947 . - . ID=Physo131948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180057;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 271204 271947 . - . ID=Physo131948;Parent=Physo131948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 271204 271947 . - 0 ID=Physo131948;Parent=Physo131948;rank=1 scaffold_18 . exon 271204 271947 . - . ID=Physo131948.1;Parent=Physo131948;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 272695 274266 . - . ID=Physo131949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180058;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 272695 274266 . - . ID=Physo131949;Parent=Physo131949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 272695 274266 . - 0 ID=Physo131949;Parent=Physo131949;rank=1 scaffold_18 . exon 272695 274266 . - . ID=Physo131949.1;Parent=Physo131949;constitutive=1;rank=1 scaffold_18 . exon 269053 269748 . + . ID=Physo156418.7;Parent=Physo156418;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_18 . exon 269810 269901 . + . ID=Physo156418.8;Parent=Physo156418;constitutive=1;ensembl_phase=1;rank=8 scaffold_18 . exon 269978 270082 . + . ID=Physo156418.9;Parent=Physo156418;constitutive=1;rank=9 scaffold_18 . exon 270158 270328 . + . ID=Physo156418.10;Parent=Physo156418;constitutive=1;rank=10 scaffold_18 ensembl protein_coding_gene 283801 284353 . + . ID=Physo114083;biotype=protein_coding;external_name=estExt_Genewise1.C_180001;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 283801 284353 . + . ID=Physo114083;Parent=Physo114083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 283801 284040 . + 0 ID=Physo114083;Parent=Physo114083;rank=1 scaffold_18 . exon 283801 284245 . + . ID=Physo114083.1;Parent=Physo114083;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_18 . exon 284316 284353 . + . ID=Physo114083.2;Parent=Physo114083;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_18 . repeat_region 289626 289678 . ? . description=dust scaffold_18 . repeat_region 290496 290629 . ? . description=trf scaffold_18 . biological_region 290720 290724 0.999 - . logic_name=eponine scaffold_18 . biological_region 290768 290769 0.999 - . logic_name=eponine scaffold_18 . biological_region 290911 290920 0.999 + . logic_name=eponine scaffold_18 . repeat_region 292085 292096 . ? . description=dust scaffold_18 . repeat_region 293584 293597 . ? . description=dust scaffold_18 . repeat_region 294477 294539 . ? . description=trf scaffold_18 . biological_region 294763 294772 0.999 - . logic_name=eponine scaffold_18 . biological_region 294914 294915 0.999 + . logic_name=eponine scaffold_18 . biological_region 294959 294963 0.999 + . logic_name=eponine scaffold_18 . repeat_region 295052 295183 . ? . description=trf scaffold_18 . repeat_region 295053 295180 . ? . description=trf scaffold_18 . repeat_region 295062 295186 . ? . description=trf scaffold_18 . biological_region 296316 296322 0.999 - . logic_name=eponine scaffold_18 . repeat_region 296653 296663 . ? . description=dust scaffold_18 . biological_region 297115 297117 0.999 + . logic_name=eponine scaffold_18 . biological_region 297328 297334 0.999 + . logic_name=eponine scaffold_18 . biological_region 297443 297446 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 296642 297543 . + . ID=Physo108596;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_180003;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 296642 297543 . + . ID=Physo108596;Parent=Physo108596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 296642 297543 . + . ID=Physo108596.1;Parent=Physo108596;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 296644 297474 . + 0 ID=Physo108596;Parent=Physo108596;rank=1 scaffold_18 ensembl protein_coding_gene 290282 292078 . - . ID=Physo131950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180059;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 290282 292078 . - . ID=Physo131950;Parent=Physo131950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 290282 292078 . - 0 ID=Physo131950;Parent=Physo131950;rank=1 scaffold_18 . exon 290282 292078 . - . ID=Physo131950.1;Parent=Physo131950;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 293604 295400 . + . ID=Physo131951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180060;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 293604 295400 . + . ID=Physo131951;Parent=Physo131951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 293604 295400 . + 0 ID=Physo131951;Parent=Physo131951;rank=1 scaffold_18 . exon 293604 295400 . + . ID=Physo131951.1;Parent=Physo131951;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 301746 302948 . - . ID=Physo108597;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_180004;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 301746 302948 . - . ID=Physo108597;Parent=Physo108597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 301746 302948 . - 0 ID=Physo108597;Parent=Physo108597;rank=1 scaffold_18 . exon 301746 302948 . - . ID=Physo108597.1;Parent=Physo108597;constitutive=1;rank=1 scaffold_18 . biological_region 309380 309381 0.999 - . logic_name=eponine scaffold_18 . biological_region 310370 310374 0.999 - . logic_name=eponine scaffold_18 . repeat_region 310539 310575 . ? . description=dust scaffold_18 . repeat_region 310539 310575 . ? . description=trf scaffold_18 . repeat_region 313867 313876 . ? . description=dust scaffold_18 . repeat_region 314878 315002 . ? . description=trf scaffold_18 . repeat_region 315031 315144 . ? . description=trf scaffold_18 . repeat_region 315478 315665 . ? . description=trf scaffold_18 . biological_region 315841 315844 0.999 - . logic_name=eponine scaffold_18 . repeat_region 315985 316028 . ? . description=trf scaffold_18 . biological_region 316676 316678 0.999 + . logic_name=eponine scaffold_18 . biological_region 317148 317149 0.999 - . logic_name=eponine scaffold_18 . biological_region 317184 317184 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 308873 310539 . - . ID=Physo131954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180063;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 308873 310539 . - . ID=Physo131954;Parent=Physo131954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 308873 309082 . - 0 ID=Physo131954;Parent=Physo131954;rank=3 scaffold_18 . exon 308873 309082 . - . ID=Physo131954.3;Parent=Physo131954;constitutive=1;rank=3 scaffold_18 . CDS 309249 310301 . - 0 ID=Physo131954;Parent=Physo131954;rank=2 scaffold_18 . exon 309249 310301 . - . ID=Physo131954.2;Parent=Physo131954;constitutive=1;rank=2 scaffold_18 . CDS 310405 310539 . - 0 ID=Physo131954;Parent=Physo131954;rank=1 scaffold_18 . exon 310405 310539 . - . ID=Physo131954.1;Parent=Physo131954;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 312092 313560 . - . ID=Physo131955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180064;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 312092 313560 . - . ID=Physo131955;Parent=Physo131955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 312092 312546 . - 0 ID=Physo131955;Parent=Physo131955;rank=2 scaffold_18 . exon 312092 312546 . - . ID=Physo131955.2;Parent=Physo131955;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 312806 313487 . - 0 ID=Physo131955;Parent=Physo131955;rank=1 scaffold_18 . exon 312806 313560 . - . ID=Physo131955.1;Parent=Physo131955;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_18 ensembl protein_coding_gene 314347 317961 . + . ID=Physo131956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180065;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 314347 317961 . + . ID=Physo131956;Parent=Physo131956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 314347 317961 . + 0 ID=Physo131956;Parent=Physo131956;rank=1 scaffold_18 . exon 314347 317961 . + . ID=Physo131956.1;Parent=Physo131956;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 318521 319192 . + . ID=Physo131957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180066;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 318521 319192 . + . ID=Physo131957;Parent=Physo131957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 318521 319192 . + 0 ID=Physo131957;Parent=Physo131957;rank=1 scaffold_18 . exon 318521 319192 . + . ID=Physo131957.1;Parent=Physo131957;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 322734 325019 . + . ID=Physo131958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180067;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 322734 325019 . + . ID=Physo131958;Parent=Physo131958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 322734 325019 . + 0 ID=Physo131958;Parent=Physo131958;rank=1 scaffold_18 . exon 322734 325019 . + . ID=Physo131958.1;Parent=Physo131958;constitutive=1;rank=1 scaffold_18 . repeat_region 328077 328084 . ? . description=dust scaffold_18 . biological_region 328673 328673 0.999 + . logic_name=eponine scaffold_18 . repeat_region 331848 331938 . ? . description=trf scaffold_18 . biological_region 336055 336057 0.999 + . logic_name=eponine scaffold_18 . biological_region 336079 336082 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 330118 331283 . + . ID=Physo131959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180068;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 330118 331283 . + . ID=Physo131959;Parent=Physo131959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 330118 330612 . + 0 ID=Physo131959;Parent=Physo131959;rank=1 scaffold_18 . exon 330118 330612 . + . ID=Physo131959.1;Parent=Physo131959;constitutive=1;rank=1 scaffold_18 . CDS 331230 331283 . + 0 ID=Physo131959;Parent=Physo131959;rank=2 scaffold_18 . exon 331230 331283 . + . ID=Physo131959.2;Parent=Physo131959;constitutive=1;rank=2 scaffold_18 ensembl protein_coding_gene 334454 335546 . + . ID=Physo131960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180069;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 334454 335546 . + . ID=Physo131960;Parent=Physo131960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 334454 334500 . + 0 ID=Physo131960;Parent=Physo131960;rank=1 scaffold_18 . exon 334454 334500 . + . ID=Physo131960.1;Parent=Physo131960;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 334585 334719 . + 0 ID=Physo131960;Parent=Physo131960;rank=2 scaffold_18 . exon 334585 334719 . + . ID=Physo131960.2;Parent=Physo131960;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 334809 334847 . + 0 ID=Physo131960;Parent=Physo131960;rank=3 scaffold_18 . exon 334809 334847 . + . ID=Physo131960.3;Parent=Physo131960;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . CDS 334919 335546 . + 0 ID=Physo131960;Parent=Physo131960;rank=4 scaffold_18 . exon 334919 335546 . + . ID=Physo131960.4;Parent=Physo131960;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 ensembl protein_coding_gene 339722 340477 . - . ID=Physo108598;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_180005;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 339722 340477 . - . ID=Physo108598;Parent=Physo108598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 339722 340477 . - 0 ID=Physo108598;Parent=Physo108598;rank=1 scaffold_18 . exon 339722 340477 . - . ID=Physo108598.1;Parent=Physo108598;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 341452 345437 . + . ID=Physo131962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180071;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 341452 345437 . + . ID=Physo131962;Parent=Physo131962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 341452 342443 . + 0 ID=Physo131962;Parent=Physo131962;rank=1 scaffold_18 . exon 341452 342443 . + . ID=Physo131962.1;Parent=Physo131962;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 342695 342710 . + 0 ID=Physo131962;Parent=Physo131962;rank=2 scaffold_18 . exon 342695 342710 . + . ID=Physo131962.2;Parent=Physo131962;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 342957 342971 . + 0 ID=Physo131962;Parent=Physo131962;rank=3 scaffold_18 . exon 342957 342971 . + . ID=Physo131962.3;Parent=Physo131962;constitutive=1;rank=3 scaffold_18 . CDS 343194 345437 . + 0 ID=Physo131962;Parent=Physo131962;rank=4 scaffold_18 . exon 343194 345437 . + . ID=Physo131962.4;Parent=Physo131962;constitutive=1;rank=4 scaffold_18 . repeat_region 354504 354599 . + . description=(TC)n scaffold_18 . repeat_region 354506 354594 . ? . description=dust scaffold_18 . repeat_region 354509 354594 . ? . description=trf scaffold_18 . repeat_region 354901 354947 . ? . description=trf scaffold_18 . repeat_region 355057 355104 . ? . description=trf scaffold_18 . biological_region 355975 355979 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 348543 353000 . - . ID=Physo131963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180072;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 348543 353000 . - . ID=Physo131963;Parent=Physo131963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 348543 348910 . - 0 ID=Physo131963;Parent=Physo131963;rank=8 scaffold_18 . exon 348543 348910 . - . ID=Physo131963.8;Parent=Physo131963;constitutive=1;ensembl_phase=1;rank=8 scaffold_18 . CDS 349031 349345 . - 0 ID=Physo131963;Parent=Physo131963;rank=7 scaffold_18 . exon 349031 349345 . - . ID=Physo131963.7;Parent=Physo131963;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_18 . CDS 349568 350362 . - 0 ID=Physo131963;Parent=Physo131963;rank=6 scaffold_18 . exon 349568 350362 . - . ID=Physo131963.6;Parent=Physo131963;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_18 . CDS 350402 350963 . - 0 ID=Physo131963;Parent=Physo131963;rank=5 scaffold_18 . exon 350402 350963 . - . ID=Physo131963.5;Parent=Physo131963;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_18 . CDS 351356 351799 . - 0 ID=Physo131963;Parent=Physo131963;rank=4 scaffold_18 . exon 351356 351799 . - . ID=Physo131963.4;Parent=Physo131963;constitutive=1;rank=4 scaffold_18 . CDS 351882 352037 . - 0 ID=Physo131963;Parent=Physo131963;rank=3 scaffold_18 . exon 351882 352037 . - . ID=Physo131963.3;Parent=Physo131963;constitutive=1;rank=3 scaffold_18 . CDS 352160 352798 . - 0 ID=Physo131963;Parent=Physo131963;rank=2 scaffold_18 . exon 352160 352798 . - . ID=Physo131963.2;Parent=Physo131963;constitutive=1;rank=2 scaffold_18 . CDS 352839 353000 . - 0 ID=Physo131963;Parent=Physo131963;rank=1 scaffold_18 . exon 352839 353000 . - . ID=Physo131963.1;Parent=Physo131963;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 355832 356532 . - . ID=Physo131964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180073;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 355832 356532 . - . ID=Physo131964;Parent=Physo131964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 355832 355859 . - 0 ID=Physo131964;Parent=Physo131964;rank=3 scaffold_18 . exon 355832 355859 . - . ID=Physo131964.3;Parent=Physo131964;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 355932 356268 . - 0 ID=Physo131964;Parent=Physo131964;rank=2 scaffold_18 . exon 355932 356268 . - . ID=Physo131964.2;Parent=Physo131964;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 356454 356532 . - 0 ID=Physo131964;Parent=Physo131964;rank=1 scaffold_18 . exon 356454 356532 . - . ID=Physo131964.1;Parent=Physo131964;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 364081 364290 . - . ID=Physo114096;biotype=protein_coding;external_name=estExt_Genewise1.C_180014;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 364081 364290 . - . ID=Physo114096;Parent=Physo114096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 364081 364290 . - . ID=Physo114096.1;Parent=Physo114096;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 364082 364252 . - 0 ID=Physo114096;Parent=Physo114096;rank=1 scaffold_18 ensembl protein_coding_gene 364926 365681 . - . ID=Physo131965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180074;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 364926 365681 . - . ID=Physo131965;Parent=Physo131965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 364926 364941 . - 0 ID=Physo131965;Parent=Physo131965;rank=2 scaffold_18 . exon 364926 364941 . - . ID=Physo131965.2;Parent=Physo131965;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 364984 365681 . - 0 ID=Physo131965;Parent=Physo131965;rank=1 scaffold_18 . exon 364984 365681 . - . ID=Physo131965.1;Parent=Physo131965;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . repeat_region 366973 370705 . ? . description=dust scaffold_18 . repeat_region 371042 371065 . ? . description=trf scaffold_18 . repeat_region 371913 371962 . ? . description=dust scaffold_18 . repeat_region 373110 373123 . ? . description=dust scaffold_18 . repeat_region 373442 373465 . ? . description=trf scaffold_18 ensembl protein_coding_gene 371992 372351 . - . ID=Physo131966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180075;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 371992 372351 . - . ID=Physo131966;Parent=Physo131966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 371992 372351 . - 0 ID=Physo131966;Parent=Physo131966;rank=1 scaffold_18 . exon 371992 372351 . - . ID=Physo131966.1;Parent=Physo131966;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 374921 378602 . + . ID=Physo131967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180076;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 374921 378602 . + . ID=Physo131967;Parent=Physo131967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 374921 375275 . + 0 ID=Physo131967;Parent=Physo131967;rank=1 scaffold_18 . exon 374921 375275 . + . ID=Physo131967.1;Parent=Physo131967;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 375309 375428 . + 0 ID=Physo131967;Parent=Physo131967;rank=2 scaffold_18 . exon 375309 375428 . + . ID=Physo131967.2;Parent=Physo131967;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 375500 375954 . + 0 ID=Physo131967;Parent=Physo131967;rank=3 scaffold_18 . exon 375500 375954 . + . ID=Physo131967.3;Parent=Physo131967;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 376154 376386 . + 0 ID=Physo131967;Parent=Physo131967;rank=4 scaffold_18 . exon 376154 376386 . + . ID=Physo131967.4;Parent=Physo131967;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . CDS 376670 377244 . + 0 ID=Physo131967;Parent=Physo131967;rank=5 scaffold_18 . exon 376670 377244 . + . ID=Physo131967.5;Parent=Physo131967;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 377632 378369 . + 0 ID=Physo131967;Parent=Physo131967;rank=6 scaffold_18 . CDS 378496 378602 . + 0 ID=Physo131967;Parent=Physo131967;rank=7 scaffold_18 . biological_region 377523 377526 0.999 - . logic_name=eponine scaffold_18 . biological_region 377617 377621 0.999 - . logic_name=eponine scaffold_18 . biological_region 381772 381775 0.999 - . logic_name=eponine scaffold_18 . repeat_region 384405 384583 . + . description=(GA)n scaffold_18 . exon 377632 378369 . + . ID=Physo131967.6;Parent=Physo131967;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_18 . exon 378496 378602 . + . ID=Physo131967.7;Parent=Physo131967;constitutive=1;ensembl_phase=1;rank=7 scaffold_18 ensembl protein_coding_gene 380189 381802 . + . ID=Physo131968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180077;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 380189 381802 . + . ID=Physo131968;Parent=Physo131968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 380189 380886 . + 0 ID=Physo131968;Parent=Physo131968;rank=1 scaffold_18 . exon 380189 380886 . + . ID=Physo131968.1;Parent=Physo131968;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 381349 381802 . + 0 ID=Physo131968;Parent=Physo131968;rank=2 scaffold_18 . exon 381349 381802 . + . ID=Physo131968.2;Parent=Physo131968;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . repeat_region 387306 387340 . ? . description=trf scaffold_18 . repeat_region 388333 388349 . ? . description=dust scaffold_18 . repeat_region 389177 389223 . ? . description=trf scaffold_18 . repeat_region 389516 389548 . ? . description=dust scaffold_18 . repeat_region 392202 392399 . ? . description=trf scaffold_18 . repeat_region 394378 394386 . ? . description=dust scaffold_18 . repeat_region 395200 395244 . ? . description=trf scaffold_18 . repeat_region 395507 395515 . ? . description=dust scaffold_18 . repeat_region 395760 395768 . ? . description=dust scaffold_18 . repeat_region 396651 397001 . + . description=GypsyPi-1c_I-int scaffold_18 ensembl protein_coding_gene 398007 398408 . + . ID=Physo131969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180078;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 398007 398408 . + . ID=Physo131969;Parent=Physo131969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 398007 398408 . + 0 ID=Physo131969;Parent=Physo131969;rank=1 scaffold_18 . exon 398007 398408 . + . ID=Physo131969.1;Parent=Physo131969;constitutive=1;rank=1 scaffold_18 . repeat_region 412342 412398 . ? . description=trf scaffold_18 . repeat_region 412677 412710 . ? . description=trf scaffold_18 . repeat_region 415038 415061 . ? . description=trf scaffold_18 . repeat_region 415782 415836 . ? . description=trf scaffold_18 . biological_region 416596 416597 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 410269 411397 . + . ID=Physo131970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180079;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 410269 411397 . + . ID=Physo131970;Parent=Physo131970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 410269 410559 . + 0 ID=Physo131970;Parent=Physo131970;rank=1 scaffold_18 . exon 410269 410559 . + . ID=Physo131970.1;Parent=Physo131970;constitutive=1;rank=1 scaffold_18 . CDS 410593 410758 . + 0 ID=Physo131970;Parent=Physo131970;rank=2 scaffold_18 . exon 410593 410758 . + . ID=Physo131970.2;Parent=Physo131970;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 410796 411397 . + 0 ID=Physo131970;Parent=Physo131970;rank=3 scaffold_18 . exon 410796 411397 . + . ID=Physo131970.3;Parent=Physo131970;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 ensembl protein_coding_gene 415441 422836 . + . ID=Physo131971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180080;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 415441 422836 . + . ID=Physo131971;Parent=Physo131971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 415441 415520 . + 0 ID=Physo131971;Parent=Physo131971;rank=1 scaffold_18 . exon 415441 415520 . + . ID=Physo131971.1;Parent=Physo131971;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 415564 416996 . + 0 ID=Physo131971;Parent=Physo131971;rank=2 scaffold_18 . exon 415564 416996 . + . ID=Physo131971.2;Parent=Physo131971;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 417129 417684 . + 0 ID=Physo131971;Parent=Physo131971;rank=3 scaffold_18 . CDS 417746 420301 . + 0 ID=Physo131971;Parent=Physo131971;rank=4 scaffold_18 . CDS 420425 421605 . + 0 ID=Physo131971;Parent=Physo131971;rank=5 scaffold_18 . CDS 421989 422257 . + 0 ID=Physo131971;Parent=Physo131971;rank=6 scaffold_18 . CDS 422456 422836 . + 0 ID=Physo131971;Parent=Physo131971;rank=7 scaffold_18 . repeat_region 417260 417282 . ? . description=dust scaffold_18 . exon 417129 417684 . + . ID=Physo131971.3;Parent=Physo131971;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . exon 417746 420301 . + . ID=Physo131971.4;Parent=Physo131971;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . exon 420425 421605 . + . ID=Physo131971.5;Parent=Physo131971;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_18 . exon 421989 422257 . + . ID=Physo131971.6;Parent=Physo131971;constitutive=1;ensembl_phase=1;rank=6 scaffold_18 . exon 422456 422836 . + . ID=Physo131971.7;Parent=Physo131971;constitutive=1;rank=7 scaffold_18 ensembl protein_coding_gene 423353 424883 . - . ID=Physo131972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180081;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 423353 424883 . - . ID=Physo131972;Parent=Physo131972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 423353 424090 . - 0 ID=Physo131972;Parent=Physo131972;rank=2 scaffold_18 . exon 423353 424090 . - . ID=Physo131972.2;Parent=Physo131972;constitutive=1;rank=2 scaffold_18 . CDS 424173 424883 . - 0 ID=Physo131972;Parent=Physo131972;rank=1 scaffold_18 . exon 424173 424883 . - . ID=Physo131972.1;Parent=Physo131972;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 425621 426313 . + . ID=Physo131973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180082;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 425621 426313 . + . ID=Physo131973;Parent=Physo131973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 425621 426313 . + 0 ID=Physo131973;Parent=Physo131973;rank=1 scaffold_18 . exon 425621 426313 . + . ID=Physo131973.1;Parent=Physo131973;constitutive=1;rank=1 scaffold_18 . biological_region 429471 429474 0.999 + . logic_name=eponine scaffold_18 . repeat_region 431843 432564 . ? . description=trf scaffold_18 . repeat_region 431856 432695 . ? . description=trf scaffold_18 ensembl protein_coding_gene 429302 437730 . - . ID=Physo131974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180083;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 429302 437730 . - . ID=Physo131974;Parent=Physo131974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 429302 429778 . - 0 ID=Physo131974;Parent=Physo131974;rank=3 scaffold_18 . exon 429302 429778 . - . ID=Physo131974.3;Parent=Physo131974;constitutive=1;rank=3 scaffold_18 . CDS 429856 437504 . - 0 ID=Physo131974;Parent=Physo131974;rank=2 scaffold_18 . exon 429856 437504 . - . ID=Physo131974.2;Parent=Physo131974;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 437547 437730 . - 0 ID=Physo131974;Parent=Physo131974;rank=1 scaffold_18 . repeat_region 438261 438274 . ? . description=dust scaffold_18 . repeat_region 438321 438330 . ? . description=dust scaffold_18 . repeat_region 438771 438781 . ? . description=dust scaffold_18 . repeat_region 443857 443864 . ? . description=dust scaffold_18 . repeat_region 444169 444214 . ? . description=dust scaffold_18 . repeat_region 444484 444499 . ? . description=dust scaffold_18 . exon 437547 437730 . - . ID=Physo131974.1;Parent=Physo131974;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 441624 444341 . - . ID=Physo131975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180084;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 441624 444341 . - . ID=Physo131975;Parent=Physo131975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 441624 444341 . - . ID=Physo131975.1;Parent=Physo131975;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_18 . CDS 441819 444341 . - 0 ID=Physo131975;Parent=Physo131975;rank=1 scaffold_18 ensembl protein_coding_gene 444738 446405 . + . ID=Physo131976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180085;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 444738 446405 . + . ID=Physo131976;Parent=Physo131976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 444738 444864 . + 0 ID=Physo131976;Parent=Physo131976;rank=1 scaffold_18 . exon 444738 444864 . + . ID=Physo131976.1;Parent=Physo131976;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 444938 445595 . + 0 ID=Physo131976;Parent=Physo131976;rank=2 scaffold_18 . exon 444938 445595 . + . ID=Physo131976.2;Parent=Physo131976;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 445685 446405 . + 0 ID=Physo131976;Parent=Physo131976;rank=3 scaffold_18 . exon 445685 446405 . + . ID=Physo131976.3;Parent=Physo131976;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . biological_region 450907 450909 0.999 + . logic_name=eponine scaffold_18 . biological_region 451126 451126 0.999 - . logic_name=eponine scaffold_18 . biological_region 455558 455564 0.999 + . logic_name=eponine scaffold_18 . biological_region 455666 455671 0.999 + . logic_name=eponine scaffold_18 . biological_region 455709 455714 0.999 - . logic_name=eponine scaffold_18 . biological_region 455753 455754 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 451595 455898 . - . ID=Physo131978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180087;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 451595 455898 . - . ID=Physo131978;Parent=Physo131978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 451595 451818 . - . ID=Physo131978.12;Parent=Physo131978;constitutive=1;ensembl_end_phase=-1;rank=12 scaffold_18 . CDS 451699 451818 . - 0 ID=Physo131978;Parent=Physo131978;rank=12 scaffold_18 . CDS 451899 452215 . - 0 ID=Physo131978;Parent=Physo131978;rank=11 scaffold_18 . exon 451899 452215 . - . ID=Physo131978.11;Parent=Physo131978;constitutive=1;ensembl_phase=1;rank=11 scaffold_18 . CDS 452279 452364 . - 0 ID=Physo131978;Parent=Physo131978;rank=10 scaffold_18 . exon 452279 452364 . - . ID=Physo131978.10;Parent=Physo131978;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_18 . CDS 452441 452520 . - 0 ID=Physo131978;Parent=Physo131978;rank=9 scaffold_18 . exon 452441 452520 . - . ID=Physo131978.9;Parent=Physo131978;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_18 . CDS 452588 453010 . - 0 ID=Physo131978;Parent=Physo131978;rank=8 scaffold_18 . exon 452588 453010 . - . ID=Physo131978.8;Parent=Physo131978;constitutive=1;rank=8 scaffold_18 . CDS 453078 453234 . - 0 ID=Physo131978;Parent=Physo131978;rank=7 scaffold_18 . exon 453078 453234 . - . ID=Physo131978.7;Parent=Physo131978;constitutive=1;ensembl_phase=2;rank=7 scaffold_18 . CDS 453306 453832 . - 0 ID=Physo131978;Parent=Physo131978;rank=6 scaffold_18 . exon 453306 453832 . - . ID=Physo131978.6;Parent=Physo131978;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_18 . CDS 453904 453996 . - 0 ID=Physo131978;Parent=Physo131978;rank=5 scaffold_18 . exon 453904 453996 . - . ID=Physo131978.5;Parent=Physo131978;constitutive=1;rank=5 scaffold_18 . CDS 454068 454655 . - 0 ID=Physo131978;Parent=Physo131978;rank=4 scaffold_18 . exon 454068 454655 . - . ID=Physo131978.4;Parent=Physo131978;constitutive=1;rank=4 scaffold_18 . CDS 454742 454903 . - 0 ID=Physo131978;Parent=Physo131978;rank=3 scaffold_18 . exon 454742 454903 . - . ID=Physo131978.3;Parent=Physo131978;constitutive=1;rank=3 scaffold_18 . CDS 455022 455222 . - 0 ID=Physo131978;Parent=Physo131978;rank=2 scaffold_18 . exon 455022 455222 . - . ID=Physo131978.2;Parent=Physo131978;constitutive=1;rank=2 scaffold_18 . CDS 455302 455898 . - 0 ID=Physo131978;Parent=Physo131978;rank=1 scaffold_18 . exon 455302 455898 . - . ID=Physo131978.1;Parent=Physo131978;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 451059 451567 . + . ID=Physo156422;biotype=protein_coding;external_name=C_scaffold_18000020;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 451059 451567 . + . ID=Physo156422;Parent=Physo156422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 451059 451430 . + 0 ID=Physo156422;Parent=Physo156422;rank=1 scaffold_18 . exon 451059 451430 . + . ID=Physo156422.1;Parent=Physo156422;constitutive=1;rank=1 scaffold_18 . CDS 451499 451567 . + 0 ID=Physo156422;Parent=Physo156422;rank=2 scaffold_18 . exon 451499 451567 . + . ID=Physo156422.2;Parent=Physo156422;constitutive=1;rank=2 scaffold_18 . repeat_region 457941 457968 . ? . description=trf scaffold_18 . repeat_region 458158 458165 . ? . description=dust scaffold_18 ensembl protein_coding_gene 458222 459774 . + . ID=Physo131979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180088;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 458222 459774 . + . ID=Physo131979;Parent=Physo131979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 458222 459310 . + 0 ID=Physo131979;Parent=Physo131979;rank=1 scaffold_18 . exon 458222 459310 . + . ID=Physo131979.1;Parent=Physo131979;constitutive=1;rank=1 scaffold_18 . CDS 459769 459774 . + 0 ID=Physo131979;Parent=Physo131979;rank=2 scaffold_18 . exon 459769 459774 . + . ID=Physo131979.2;Parent=Physo131979;constitutive=1;rank=2 scaffold_18 . biological_region 467223 467230 0.999 + . logic_name=eponine scaffold_18 . biological_region 467320 467327 0.999 + . logic_name=eponine scaffold_18 . biological_region 467419 467420 0.999 - . logic_name=eponine scaffold_18 . biological_region 467750 467752 0.999 - . logic_name=eponine scaffold_18 . biological_region 468036 468041 0.999 - . logic_name=eponine scaffold_18 . biological_region 468093 468098 0.999 + . logic_name=eponine scaffold_18 . biological_region 468258 468262 0.999 - . logic_name=eponine scaffold_18 . biological_region 470140 470142 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 467257 468380 . - . ID=Physo131980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180089;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 467257 468380 . - . ID=Physo131980;Parent=Physo131980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 467257 468366 . - 0 ID=Physo131980;Parent=Physo131980;rank=1 scaffold_18 . exon 467257 468380 . - . ID=Physo131980.1;Parent=Physo131980;constitutive=1;ensembl_phase=-1;rank=1 scaffold_18 ensembl protein_coding_gene 468580 470276 . - . ID=Physo131981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180090;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 468580 470276 . - . ID=Physo131981;Parent=Physo131981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 468580 468815 . - 0 ID=Physo131981;Parent=Physo131981;rank=6 scaffold_18 . exon 468580 468815 . - . ID=Physo131981.6;Parent=Physo131981;constitutive=1;ensembl_phase=1;rank=6 scaffold_18 . CDS 468983 469017 . - 0 ID=Physo131981;Parent=Physo131981;rank=5 scaffold_18 . exon 468983 469017 . - . ID=Physo131981.5;Parent=Physo131981;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 469094 469254 . - 0 ID=Physo131981;Parent=Physo131981;rank=4 scaffold_18 . exon 469094 469254 . - . ID=Physo131981.4;Parent=Physo131981;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . CDS 469319 469468 . - 0 ID=Physo131981;Parent=Physo131981;rank=3 scaffold_18 . exon 469319 469468 . - . ID=Physo131981.3;Parent=Physo131981;constitutive=1;rank=3 scaffold_18 . CDS 469538 469751 . - 0 ID=Physo131981;Parent=Physo131981;rank=2 scaffold_18 . exon 469538 469751 . - . ID=Physo131981.2;Parent=Physo131981;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 469822 470276 . - 0 ID=Physo131981;Parent=Physo131981;rank=1 scaffold_18 . exon 469822 470276 . - . ID=Physo131981.1;Parent=Physo131981;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . repeat_region 479649 479664 . ? . description=dust scaffold_18 ensembl protein_coding_gene 481635 482972 . + . ID=Physo131982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180091;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 481635 482972 . + . ID=Physo131982;Parent=Physo131982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 481635 482553 . + 0 ID=Physo131982;Parent=Physo131982;rank=1 scaffold_18 . exon 481635 482553 . + . ID=Physo131982.1;Parent=Physo131982;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 482737 482972 . + 0 ID=Physo131982;Parent=Physo131982;rank=2 scaffold_18 . exon 482737 482972 . + . ID=Physo131982.2;Parent=Physo131982;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 ensembl protein_coding_gene 483706 484963 . - . ID=Physo131983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180092;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 483706 484963 . - . ID=Physo131983;Parent=Physo131983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 483706 484243 . - 0 ID=Physo131983;Parent=Physo131983;rank=3 scaffold_18 . exon 483706 484243 . - . ID=Physo131983.3;Parent=Physo131983;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 484308 484473 . - 0 ID=Physo131983;Parent=Physo131983;rank=2 scaffold_18 . exon 484308 484473 . - . ID=Physo131983.2;Parent=Physo131983;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 484555 484963 . - 0 ID=Physo131983;Parent=Physo131983;rank=1 scaffold_18 . exon 484555 484963 . - . ID=Physo131983.1;Parent=Physo131983;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . biological_region 487369 487371 0.999 + . logic_name=eponine scaffold_18 . biological_region 489135 489137 0.999 - . logic_name=eponine scaffold_18 . biological_region 489267 489271 0.999 + . logic_name=eponine scaffold_18 . repeat_region 490773 490793 . ? . description=trf scaffold_18 . biological_region 491736 491740 0.999 + . logic_name=eponine scaffold_18 . biological_region 491756 491757 0.999 + . logic_name=eponine scaffold_18 . biological_region 491853 491857 0.999 + . logic_name=eponine scaffold_18 . biological_region 491854 491857 0.999 - . logic_name=eponine scaffold_18 . repeat_region 493509 495561 . - . description=GypsyPi-1c_I-int scaffold_18 . biological_region 496113 496118 0.999 + . logic_name=eponine scaffold_18 . biological_region 496140 496143 0.999 - . logic_name=eponine scaffold_18 . biological_region 496209 496213 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 489693 490847 . + . ID=Physo131984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180093;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 489693 490847 . + . ID=Physo131984;Parent=Physo131984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 489693 490847 . + 0 ID=Physo131984;Parent=Physo131984;rank=1 scaffold_18 . exon 489693 490847 . + . ID=Physo131984.1;Parent=Physo131984;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 491491 493083 . + . ID=Physo131985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180094;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 491491 493083 . + . ID=Physo131985;Parent=Physo131985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 491491 491933 . + 0 ID=Physo131985;Parent=Physo131985;rank=1 scaffold_18 . exon 491491 491933 . + . ID=Physo131985.1;Parent=Physo131985;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 492000 492438 . + 0 ID=Physo131985;Parent=Physo131985;rank=2 scaffold_18 . exon 492000 492438 . + . ID=Physo131985.2;Parent=Physo131985;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 492492 492523 . + 0 ID=Physo131985;Parent=Physo131985;rank=3 scaffold_18 . exon 492492 492523 . + . ID=Physo131985.3;Parent=Physo131985;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 492690 493083 . + 0 ID=Physo131985;Parent=Physo131985;rank=4 scaffold_18 . exon 492690 493083 . + . ID=Physo131985.4;Parent=Physo131985;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 ensembl protein_coding_gene 493257 496882 . - . ID=Physo131986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180095;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 493257 496882 . - . ID=Physo131986;Parent=Physo131986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 493257 493263 . - 0 ID=Physo131986;Parent=Physo131986;rank=7 scaffold_18 . exon 493257 493263 . - . ID=Physo131986.7;Parent=Physo131986;constitutive=1;ensembl_phase=2;rank=7 scaffold_18 . CDS 493304 494039 . - 0 ID=Physo131986;Parent=Physo131986;rank=6 scaffold_18 . exon 493304 494039 . - . ID=Physo131986.6;Parent=Physo131986;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_18 . CDS 494107 494142 . - 0 ID=Physo131986;Parent=Physo131986;rank=5 scaffold_18 . exon 494107 494142 . - . ID=Physo131986.5;Parent=Physo131986;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_18 . CDS 494193 494600 . - 0 ID=Physo131986;Parent=Physo131986;rank=4 scaffold_18 . exon 494193 494600 . - . ID=Physo131986.4;Parent=Physo131986;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 494694 494965 . - 0 ID=Physo131986;Parent=Physo131986;rank=3 scaffold_18 . exon 494694 494965 . - . ID=Physo131986.3;Parent=Physo131986;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 494994 495471 . - 0 ID=Physo131986;Parent=Physo131986;rank=2 scaffold_18 . exon 494994 495471 . - . ID=Physo131986.2;Parent=Physo131986;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 495622 496882 . - 0 ID=Physo131986;Parent=Physo131986;rank=1 scaffold_18 . exon 495622 496882 . - . ID=Physo131986.1;Parent=Physo131986;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 499591 499880 . + . ID=Physo114109;biotype=protein_coding;external_name=estExt_Genewise1.C_180027;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 499591 499880 . + . ID=Physo114109;Parent=Physo114109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 499591 499880 . + . ID=Physo114109.1;Parent=Physo114109;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 499678 499848 . + 0 ID=Physo114109;Parent=Physo114109;rank=1 scaffold_18 ensembl protein_coding_gene 500619 500881 . + . ID=Physo114112;biotype=protein_coding;external_name=estExt_Genewise1.C_180030;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 500619 500881 . + . ID=Physo114112;Parent=Physo114112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 500619 500676 . + . ID=Physo114112.1;Parent=Physo114112;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 500661 500676 . + 0 ID=Physo114112;Parent=Physo114112;rank=1 scaffold_18 . CDS 500697 500881 . + 0 ID=Physo114112;Parent=Physo114112;rank=2 scaffold_18 . exon 500697 500881 . + . ID=Physo114112.2;Parent=Physo114112;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 ensembl protein_coding_gene 502195 503705 . - . ID=Physo131987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180096;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 502195 503705 . - . ID=Physo131987;Parent=Physo131987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 502195 502611 . - 0 ID=Physo131987;Parent=Physo131987;rank=4 scaffold_18 . exon 502195 502611 . - . ID=Physo131987.4;Parent=Physo131987;constitutive=1;rank=4 scaffold_18 . CDS 502890 502951 . - 0 ID=Physo131987;Parent=Physo131987;rank=3 scaffold_18 . exon 502890 502951 . - . ID=Physo131987.3;Parent=Physo131987;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 503003 503140 . - 0 ID=Physo131987;Parent=Physo131987;rank=2 scaffold_18 . exon 503003 503140 . - . ID=Physo131987.2;Parent=Physo131987;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 503252 503705 . - 0 ID=Physo131987;Parent=Physo131987;rank=1 scaffold_18 . exon 503252 503705 . - . ID=Physo131987.1;Parent=Physo131987;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . biological_region 509058 509060 0.999 + . logic_name=eponine scaffold_18 . biological_region 510094 510096 0.999 + . logic_name=eponine scaffold_18 . biological_region 510180 510182 0.999 + . logic_name=eponine scaffold_18 . biological_region 512031 512036 0.999 - . logic_name=eponine scaffold_18 . biological_region 512064 512067 0.999 - . logic_name=eponine scaffold_18 . biological_region 512083 512084 0.999 - . logic_name=eponine scaffold_18 . biological_region 512525 512529 0.999 + . logic_name=eponine scaffold_18 . biological_region 512720 512720 0.999 + . logic_name=eponine scaffold_18 . biological_region 512890 512891 0.999 - . logic_name=eponine scaffold_18 . biological_region 513133 513136 0.999 + . logic_name=eponine scaffold_18 . biological_region 513331 513335 0.999 - . logic_name=eponine scaffold_18 . biological_region 513389 513389 0.999 + . logic_name=eponine scaffold_18 . biological_region 514071 514078 0.999 + . logic_name=eponine scaffold_18 . biological_region 514169 514173 0.999 - . logic_name=eponine scaffold_18 . biological_region 514196 514198 0.999 - . logic_name=eponine scaffold_18 . biological_region 514420 514420 0.999 + . logic_name=eponine scaffold_18 . biological_region 514437 514439 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 512467 514443 . + . ID=Physo131988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180097;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 512467 514443 . + . ID=Physo131988;Parent=Physo131988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 512467 514443 . + 0 ID=Physo131988;Parent=Physo131988;rank=1 scaffold_18 . exon 512467 514443 . + . ID=Physo131988.1;Parent=Physo131988;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 514890 518427 . + . ID=Physo131989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180098;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 514890 518427 . + . ID=Physo131989;Parent=Physo131989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 514890 515077 . + 0 ID=Physo131989;Parent=Physo131989;rank=1 scaffold_18 . exon 514890 515077 . + . ID=Physo131989.1;Parent=Physo131989;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 515307 518427 . + 0 ID=Physo131989;Parent=Physo131989;rank=2 scaffold_18 . exon 515307 518427 . + . ID=Physo131989.2;Parent=Physo131989;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . repeat_region 518792 518829 . ? . description=trf scaffold_18 . repeat_region 521001 521020 . ? . description=trf scaffold_18 ensembl protein_coding_gene 519300 520863 . + . ID=Physo131990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180099;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 519300 520863 . + . ID=Physo131990;Parent=Physo131990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 519300 519305 . + 0 ID=Physo131990;Parent=Physo131990;rank=1 scaffold_18 . exon 519300 519305 . + . ID=Physo131990.1;Parent=Physo131990;constitutive=1;rank=1 scaffold_18 . CDS 519554 520587 . + 0 ID=Physo131990;Parent=Physo131990;rank=2 scaffold_18 . exon 519554 520587 . + . ID=Physo131990.2;Parent=Physo131990;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 520623 520863 . + 0 ID=Physo131990;Parent=Physo131990;rank=3 scaffold_18 . exon 520623 520863 . + . ID=Physo131990.3;Parent=Physo131990;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 ensembl protein_coding_gene 521140 525120 . - . ID=Physo131991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180100;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 521140 525120 . - . ID=Physo131991;Parent=Physo131991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 521140 523389 . - 0 ID=Physo131991;Parent=Physo131991;rank=5 scaffold_18 . exon 521140 523389 . - . ID=Physo131991.5;Parent=Physo131991;constitutive=1;rank=5 scaffold_18 . CDS 523811 523965 . - 0 ID=Physo131991;Parent=Physo131991;rank=4 scaffold_18 . exon 523811 523965 . - . ID=Physo131991.4;Parent=Physo131991;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 524035 524081 . - 0 ID=Physo131991;Parent=Physo131991;rank=3 scaffold_18 . exon 524035 524081 . - . ID=Physo131991.3;Parent=Physo131991;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 524152 524979 . - 0 ID=Physo131991;Parent=Physo131991;rank=2 scaffold_18 . exon 524152 524979 . - . ID=Physo131991.2;Parent=Physo131991;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . CDS 525086 525120 . - 0 ID=Physo131991;Parent=Physo131991;rank=1 scaffold_18 . exon 525086 525120 . - . ID=Physo131991.1;Parent=Physo131991;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . biological_region 532135 532140 0.999 - . logic_name=eponine scaffold_18 . biological_region 532191 532196 0.999 + . logic_name=eponine scaffold_18 . biological_region 533877 533880 0.999 - . logic_name=eponine scaffold_18 . repeat_region 534393 534422 . ? . description=dust scaffold_18 . biological_region 535696 535700 0.999 - . logic_name=eponine scaffold_18 . biological_region 535729 535733 0.999 - . logic_name=eponine scaffold_18 . biological_region 535963 535968 0.999 + . logic_name=eponine scaffold_18 ensembl protein_coding_gene 529846 530667 . + . ID=Physo131992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180101;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 529846 530667 . + . ID=Physo131992;Parent=Physo131992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 529846 530667 . + 0 ID=Physo131992;Parent=Physo131992;rank=1 scaffold_18 . exon 529846 530667 . + . ID=Physo131992.1;Parent=Physo131992;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 533682 536564 . + . ID=Physo131993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180102;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 533682 536564 . + . ID=Physo131993;Parent=Physo131993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 533682 534219 . + 0 ID=Physo131993;Parent=Physo131993;rank=1 scaffold_18 . exon 533682 534219 . + . ID=Physo131993.1;Parent=Physo131993;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 534351 534743 . + 0 ID=Physo131993;Parent=Physo131993;rank=2 scaffold_18 . exon 534351 534743 . + . ID=Physo131993.2;Parent=Physo131993;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 534799 536564 . + 0 ID=Physo131993;Parent=Physo131993;rank=3 scaffold_18 . exon 534799 536564 . + . ID=Physo131993.3;Parent=Physo131993;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 . repeat_region 537545 537574 . ? . description=trf scaffold_18 ensembl protein_coding_gene 536791 537324 . - . ID=Physo131994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180103;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 536791 537324 . - . ID=Physo131994;Parent=Physo131994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 536791 537324 . - 0 ID=Physo131994;Parent=Physo131994;rank=1 scaffold_18 . exon 536791 537324 . - . ID=Physo131994.1;Parent=Physo131994;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 545927 547019 . + . ID=Physo131995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180104;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 545927 547019 . + . ID=Physo131995;Parent=Physo131995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 545927 546061 . + 0 ID=Physo131995;Parent=Physo131995;rank=1 scaffold_18 . exon 545927 546061 . + . ID=Physo131995.1;Parent=Physo131995;constitutive=1;rank=1 scaffold_18 . CDS 546112 546697 . + 0 ID=Physo131995;Parent=Physo131995;rank=2 scaffold_18 . CDS 546751 547019 . + 0 ID=Physo131995;Parent=Physo131995;rank=3 scaffold_18 . repeat_region 548567 548579 . ? . description=dust scaffold_18 . biological_region 550315 550319 0.999 - . logic_name=eponine scaffold_18 . repeat_region 552424 552436 . ? . description=dust scaffold_18 . repeat_region 553159 553167 . ? . description=dust scaffold_18 . exon 546112 546697 . + . ID=Physo131995.2;Parent=Physo131995;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . exon 546751 547019 . + . ID=Physo131995.3;Parent=Physo131995;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 ensembl protein_coding_gene 553561 554722 . + . ID=Physo131996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180105;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 553561 554722 . + . ID=Physo131996;Parent=Physo131996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 553561 553855 . + 0 ID=Physo131996;Parent=Physo131996;rank=1 scaffold_18 . exon 553561 553855 . + . ID=Physo131996.1;Parent=Physo131996;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 554070 554626 . + 0 ID=Physo131996;Parent=Physo131996;rank=2 scaffold_18 . exon 554070 554626 . + . ID=Physo131996.2;Parent=Physo131996;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 554675 554722 . + 0 ID=Physo131996;Parent=Physo131996;rank=3 scaffold_18 . exon 554675 554722 . + . ID=Physo131996.3;Parent=Physo131996;constitutive=1;rank=3 scaffold_18 . repeat_region 557065 557099 . ? . description=trf scaffold_18 . repeat_region 557475 557626 . ? . description=trf scaffold_18 . repeat_region 557493 557625 . ? . description=trf scaffold_18 ensembl protein_coding_gene 560196 560750 . + . ID=Physo114115;biotype=protein_coding;external_name=estExt_Genewise1.C_180033;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 560196 560750 . + . ID=Physo114115;Parent=Physo114115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 560196 560750 . + . ID=Physo114115.1;Parent=Physo114115;constitutive=1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 560472 560750 . + 0 ID=Physo114115;Parent=Physo114115;rank=1 scaffold_18 . repeat_region 567221 567229 . ? . description=dust scaffold_18 . repeat_region 572200 572224 . ? . description=dust scaffold_18 . biological_region 573082 573083 0.999 - . logic_name=eponine scaffold_18 . repeat_region 573182 573202 . ? . description=dust scaffold_18 ensembl protein_coding_gene 566094 566520 . + . ID=Physo131997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180106;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 566094 566520 . + . ID=Physo131997;Parent=Physo131997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 566094 566345 . + . ID=Physo131997.1;Parent=Physo131997;constitutive=1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 566172 566345 . + 0 ID=Physo131997;Parent=Physo131997;rank=1 scaffold_18 . CDS 566365 566520 . + 0 ID=Physo131997;Parent=Physo131997;rank=2 scaffold_18 . exon 566365 566520 . + . ID=Physo131997.2;Parent=Physo131997;constitutive=1;rank=2 scaffold_18 ensembl protein_coding_gene 567965 569971 . - . ID=Physo131998;biotype=protein_coding;description=PsAvh264 [Source:UniProtKB/TrEMBL%3BAcc:E0W4U4];external_name=estExt_fgenesh1_pg.C_180107;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 567965 569971 . - . ID=Physo131998;Parent=Physo131998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 567965 568054 . - 0 ID=Physo131998;Parent=Physo131998;rank=4 scaffold_18 . exon 567965 568054 . - . ID=Physo131998.4;Parent=Physo131998;constitutive=1;rank=4 scaffold_18 . CDS 568100 568198 . - 0 ID=Physo131998;Parent=Physo131998;rank=3 scaffold_18 . exon 568100 568198 . - . ID=Physo131998.3;Parent=Physo131998;constitutive=1;rank=3 scaffold_18 . CDS 568635 569377 . - 0 ID=Physo131998;Parent=Physo131998;rank=2 scaffold_18 . exon 568635 569377 . - . ID=Physo131998.2;Parent=Physo131998;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 569461 569971 . - 0 ID=Physo131998;Parent=Physo131998;rank=1 scaffold_18 . exon 569461 569971 . - . ID=Physo131998.1;Parent=Physo131998;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . repeat_region 581993 582034 . ? . description=trf scaffold_18 . repeat_region 585252 585295 . ? . description=trf scaffold_18 ensembl protein_coding_gene 576643 577596 . + . ID=Physo108599;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_180006;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 576643 577596 . + . ID=Physo108599;Parent=Physo108599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 576643 577596 . + 0 ID=Physo108599;Parent=Physo108599;rank=1 scaffold_18 . exon 576643 577596 . + . ID=Physo108599.1;Parent=Physo108599;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 578085 582491 . - . ID=Physo132000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180109;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 578085 582491 . - . ID=Physo132000;Parent=Physo132000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 578085 582491 . - 0 ID=Physo132000;Parent=Physo132000;rank=1 scaffold_18 . exon 578085 582491 . - . ID=Physo132000.1;Parent=Physo132000;constitutive=1;rank=1 scaffold_18 . biological_region 586964 586968 0.999 + . logic_name=eponine scaffold_18 . biological_region 587046 587049 0.999 - . logic_name=eponine scaffold_18 . repeat_region 587438 587463 . ? . description=dust scaffold_18 ensembl protein_coding_gene 586632 587549 . + . ID=Physo132001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180110;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 586632 587549 . + . ID=Physo132001;Parent=Physo132001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 586632 586795 . + 0 ID=Physo132001;Parent=Physo132001;rank=1 scaffold_18 . exon 586632 586795 . + . ID=Physo132001.1;Parent=Physo132001;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 586875 587115 . + 0 ID=Physo132001;Parent=Physo132001;rank=2 scaffold_18 . exon 586875 587115 . + . ID=Physo132001.2;Parent=Physo132001;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 587184 587549 . + 0 ID=Physo132001;Parent=Physo132001;rank=3 scaffold_18 . exon 587184 587549 . + . ID=Physo132001.3;Parent=Physo132001;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 587640 596945 . - . ID=Physo132002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180111;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 587640 596945 . - . ID=Physo132002;Parent=Physo132002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 587640 588149 . - 0 ID=Physo132002;Parent=Physo132002;rank=8 scaffold_18 . exon 587640 588149 . - . ID=Physo132002.8;Parent=Physo132002;constitutive=1;rank=8 scaffold_18 . CDS 588218 588820 . - 0 ID=Physo132002;Parent=Physo132002;rank=7 scaffold_18 . exon 588218 588820 . - . ID=Physo132002.7;Parent=Physo132002;constitutive=1;rank=7 scaffold_18 . CDS 588892 589824 . - 0 ID=Physo132002;Parent=Physo132002;rank=6 scaffold_18 . exon 588892 589824 . - . ID=Physo132002.6;Parent=Physo132002;constitutive=1;rank=6 scaffold_18 . CDS 590161 590856 . - 0 ID=Physo132002;Parent=Physo132002;rank=5 scaffold_18 . exon 590161 590856 . - . ID=Physo132002.5;Parent=Physo132002;constitutive=1;rank=5 scaffold_18 . CDS 590985 591018 . - 0 ID=Physo132002;Parent=Physo132002;rank=4 scaffold_18 . exon 590985 591018 . - . ID=Physo132002.4;Parent=Physo132002;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 591180 591619 . - 0 ID=Physo132002;Parent=Physo132002;rank=3 scaffold_18 . exon 591180 591619 . - . ID=Physo132002.3;Parent=Physo132002;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 592142 594007 . - 0 ID=Physo132002;Parent=Physo132002;rank=2 scaffold_18 . exon 592142 594007 . - . ID=Physo132002.2;Parent=Physo132002;constitutive=1;rank=2 scaffold_18 . CDS 594084 596945 . - 0 ID=Physo132002;Parent=Physo132002;rank=1 scaffold_18 . exon 594084 596945 . - . ID=Physo132002.1;Parent=Physo132002;constitutive=1;rank=1 scaffold_18 . repeat_region 596257 596297 . ? . description=trf scaffold_18 . repeat_region 596889 596920 . ? . description=trf scaffold_18 . repeat_region 604615 604665 . ? . description=trf scaffold_18 . repeat_region 604623 604664 . ? . description=trf scaffold_18 . repeat_region 605140 605187 . ? . description=trf scaffold_18 . repeat_region 605146 605187 . ? . description=trf scaffold_18 . repeat_region 605155 605190 . ? . description=trf scaffold_18 ensembl protein_coding_gene 597166 600297 . + . ID=Physo132003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180112;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 597166 600297 . + . ID=Physo132003;Parent=Physo132003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 597166 597381 . + 0 ID=Physo132003;Parent=Physo132003;rank=1 scaffold_18 . exon 597166 597381 . + . ID=Physo132003.1;Parent=Physo132003;constitutive=1;rank=1 scaffold_18 . CDS 597403 597438 . + 0 ID=Physo132003;Parent=Physo132003;rank=2 scaffold_18 . exon 597403 597438 . + . ID=Physo132003.2;Parent=Physo132003;constitutive=1;rank=2 scaffold_18 . CDS 598007 598081 . + 0 ID=Physo132003;Parent=Physo132003;rank=3 scaffold_18 . exon 598007 598081 . + . ID=Physo132003.3;Parent=Physo132003;constitutive=1;rank=3 scaffold_18 . CDS 598139 598214 . + 0 ID=Physo132003;Parent=Physo132003;rank=4 scaffold_18 . exon 598139 598214 . + . ID=Physo132003.4;Parent=Physo132003;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_18 . CDS 598572 598778 . + 0 ID=Physo132003;Parent=Physo132003;rank=5 scaffold_18 . exon 598572 598778 . + . ID=Physo132003.5;Parent=Physo132003;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_18 . CDS 598853 600297 . + 0 ID=Physo132003;Parent=Physo132003;rank=6 scaffold_18 . exon 598853 600297 . + . ID=Physo132003.6;Parent=Physo132003;constitutive=1;ensembl_phase=1;rank=6 scaffold_18 ensembl protein_coding_gene 602462 603960 . + . ID=Physo132004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180113;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 602462 603960 . + . ID=Physo132004;Parent=Physo132004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 602462 602476 . + 0 ID=Physo132004;Parent=Physo132004;rank=1 scaffold_18 . exon 602462 602476 . + . ID=Physo132004.1;Parent=Physo132004;constitutive=1;rank=1 scaffold_18 . CDS 602988 603708 . + 0 ID=Physo132004;Parent=Physo132004;rank=2 scaffold_18 . exon 602988 603708 . + . ID=Physo132004.2;Parent=Physo132004;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 603863 603960 . + 0 ID=Physo132004;Parent=Physo132004;rank=3 scaffold_18 . exon 603863 603960 . + . ID=Physo132004.3;Parent=Physo132004;constitutive=1;ensembl_phase=1;rank=3 scaffold_18 ensembl protein_coding_gene 605023 605410 . - . ID=Physo132005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180114;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 605023 605410 . - . ID=Physo132005;Parent=Physo132005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 605023 605403 . - 0 ID=Physo132005;Parent=Physo132005;rank=1 scaffold_18 . exon 605023 605410 . - . ID=Physo132005.1;Parent=Physo132005;constitutive=1;ensembl_phase=-1;rank=1 scaffold_18 ensembl protein_coding_gene 605551 606729 . + . ID=Physo132006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180115;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 605551 606729 . + . ID=Physo132006;Parent=Physo132006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 605551 605908 . + 0 ID=Physo132006;Parent=Physo132006;rank=1 scaffold_18 . exon 605551 605908 . + . ID=Physo132006.1;Parent=Physo132006;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 605989 606217 . + 0 ID=Physo132006;Parent=Physo132006;rank=2 scaffold_18 . CDS 606306 606452 . + 0 ID=Physo132006;Parent=Physo132006;rank=3 scaffold_18 . CDS 606531 606729 . + 0 ID=Physo132006;Parent=Physo132006;rank=4 scaffold_18 . biological_region 605663 605673 0.999 - . logic_name=eponine scaffold_18 . biological_region 605782 605783 0.999 - . logic_name=eponine scaffold_18 . biological_region 610383 610385 0.999 - . logic_name=eponine scaffold_18 . repeat_region 611455 611494 . + . description=(CTAGT)n scaffold_18 . repeat_region 612119 612126 . ? . description=dust scaffold_18 . repeat_region 612479 612499 . ? . description=dust scaffold_18 . repeat_region 612849 612878 . ? . description=dust scaffold_18 . repeat_region 613380 613438 . ? . description=dust scaffold_18 . repeat_region 613551 613571 . ? . description=dust scaffold_18 . repeat_region 614118 614152 . ? . description=dust scaffold_18 . repeat_region 614500 614556 . ? . description=dust scaffold_18 ensembl protein_coding_gene 609662 611276 . - . ID=Physo108600;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_180007;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 609662 611276 . - . ID=Physo108600;Parent=Physo108600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 609662 609700 . - 0 ID=Physo108600;Parent=Physo108600;rank=3 scaffold_18 . exon 609662 609700 . - . ID=Physo108600.3;Parent=Physo108600;constitutive=1;rank=3 scaffold_18 . CDS 610605 610862 . - 0 ID=Physo108600;Parent=Physo108600;rank=2 scaffold_18 . exon 610605 610862 . - . ID=Physo108600.2;Parent=Physo108600;constitutive=1;rank=2 scaffold_18 . CDS 610932 611276 . - 0 ID=Physo108600;Parent=Physo108600;rank=1 scaffold_18 . exon 610932 611276 . - . ID=Physo108600.1;Parent=Physo108600;constitutive=1;rank=1 scaffold_18 . exon 605989 606217 . + . ID=Physo132006.2;Parent=Physo132006;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . exon 606306 606452 . + . ID=Physo132006.3;Parent=Physo132006;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . exon 606531 606729 . + . ID=Physo132006.4;Parent=Physo132006;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 ensembl protein_coding_gene 613429 616225 . + . ID=Physo156427;biotype=protein_coding;external_name=C_scaffold_18000025;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 613429 616225 . + . ID=Physo156427;Parent=Physo156427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 613429 614003 . + 0 ID=Physo156427;Parent=Physo156427;rank=1 scaffold_18 . exon 613429 614003 . + . ID=Physo156427.1;Parent=Physo156427;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 614439 614809 . + 0 ID=Physo156427;Parent=Physo156427;rank=2 scaffold_18 . exon 614439 614809 . + . ID=Physo156427.2;Parent=Physo156427;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 614837 614975 . + 0 ID=Physo156427;Parent=Physo156427;rank=3 scaffold_18 . exon 614837 614975 . + . ID=Physo156427.3;Parent=Physo156427;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 615060 615342 . + 0 ID=Physo156427;Parent=Physo156427;rank=4 scaffold_18 . exon 615060 615342 . + . ID=Physo156427.4;Parent=Physo156427;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 615406 615484 . + 0 ID=Physo156427;Parent=Physo156427;rank=5 scaffold_18 . exon 615406 615484 . + . ID=Physo156427.5;Parent=Physo156427;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_18 . CDS 615582 615814 . + 0 ID=Physo156427;Parent=Physo156427;rank=6 scaffold_18 . CDS 615887 616225 . + 0 ID=Physo156427;Parent=Physo156427;rank=7 scaffold_18 . repeat_region 622749 622969 . ? . description=trf scaffold_18 . repeat_region 624272 624565 . + . description=Sola3-2_PS scaffold_18 ensembl protein_coding_gene 617294 620698 . - . ID=Physo132010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180119;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 617294 620698 . - . ID=Physo132010;Parent=Physo132010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 617294 620698 . - 0 ID=Physo132010;Parent=Physo132010;rank=1 scaffold_18 . exon 617294 620698 . - . ID=Physo132010.1;Parent=Physo132010;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 623426 625207 . + . ID=Physo132011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180120;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 623426 625207 . + . ID=Physo132011;Parent=Physo132011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 623426 625207 . + 0 ID=Physo132011;Parent=Physo132011;rank=1 scaffold_18 . exon 623426 625207 . + . ID=Physo132011.1;Parent=Physo132011;constitutive=1;rank=1 scaffold_18 . exon 615582 615814 . + . ID=Physo156427.6;Parent=Physo156427;constitutive=1;ensembl_phase=1;rank=6 scaffold_18 . exon 615887 616225 . + . ID=Physo156427.7;Parent=Physo156427;constitutive=1;rank=7 scaffold_18 ensembl protein_coding_gene 616315 617138 . - . ID=Physo156428;biotype=protein_coding;external_name=C_scaffold_18000026;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 616315 617138 . - . ID=Physo156428;Parent=Physo156428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 616315 616767 . - 0 ID=Physo156428;Parent=Physo156428;rank=3 scaffold_18 . exon 616315 616767 . - . ID=Physo156428.3;Parent=Physo156428;constitutive=1;rank=3 scaffold_18 . CDS 616845 616994 . - 0 ID=Physo156428;Parent=Physo156428;rank=2 scaffold_18 . exon 616845 616994 . - . ID=Physo156428.2;Parent=Physo156428;constitutive=1;rank=2 scaffold_18 . CDS 617019 617138 . - 0 ID=Physo156428;Parent=Physo156428;rank=1 scaffold_18 . exon 617019 617138 . - . ID=Physo156428.1;Parent=Physo156428;constitutive=1;rank=1 scaffold_18 . biological_region 626237 626239 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 631392 633099 . + . ID=Physo132012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180121;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 631392 633099 . + . ID=Physo132012;Parent=Physo132012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 631392 632859 . + 0 ID=Physo132012;Parent=Physo132012;rank=1 scaffold_18 . exon 631392 632859 . + . ID=Physo132012.1;Parent=Physo132012;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 632885 633099 . + 0 ID=Physo132012;Parent=Physo132012;rank=2 scaffold_18 . exon 632885 633099 . + . ID=Physo132012.2;Parent=Physo132012;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . repeat_region 635901 635908 . ? . description=dust scaffold_18 . repeat_region 636169 636208 . ? . description=trf scaffold_18 . repeat_region 636173 636209 . ? . description=trf scaffold_18 . repeat_region 638489 638789 . + . description=Sola3-2_PS scaffold_18 . repeat_region 640526 640568 . ? . description=trf scaffold_18 . repeat_region 643225 643318 . ? . description=trf scaffold_18 . repeat_region 644088 644258 . ? . description=trf scaffold_18 . repeat_region 644090 644259 . ? . description=dust scaffold_18 . repeat_region 644098 644263 . ? . description=trf scaffold_18 . repeat_region 644120 644241 . ? . description=trf scaffold_18 ensembl protein_coding_gene 637584 639431 . + . ID=Physo132013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180122;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 637584 639431 . + . ID=Physo132013;Parent=Physo132013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 637584 639431 . + 0 ID=Physo132013;Parent=Physo132013;rank=1 scaffold_18 . exon 637584 639431 . + . ID=Physo132013.1;Parent=Physo132013;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 640224 640796 . + . ID=Physo132014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180123;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 640224 640796 . + . ID=Physo132014;Parent=Physo132014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 640224 640796 . + . ID=Physo132014.1;Parent=Physo132014;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 640415 640771 . + 0 ID=Physo132014;Parent=Physo132014;rank=1 scaffold_18 ensembl protein_coding_gene 643849 645762 . + . ID=Physo132015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180124;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 643849 645762 . + . ID=Physo132015;Parent=Physo132015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 643849 643860 . + 0 ID=Physo132015;Parent=Physo132015;rank=1 scaffold_18 . exon 643849 643860 . + . ID=Physo132015.1;Parent=Physo132015;constitutive=1;rank=1 scaffold_18 . CDS 644086 644233 . + 0 ID=Physo132015;Parent=Physo132015;rank=2 scaffold_18 . exon 644086 644233 . + . ID=Physo132015.2;Parent=Physo132015;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_18 . CDS 644512 644542 . + 0 ID=Physo132015;Parent=Physo132015;rank=3 scaffold_18 . exon 644512 644542 . + . ID=Physo132015.3;Parent=Physo132015;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 644766 644823 . + 0 ID=Physo132015;Parent=Physo132015;rank=4 scaffold_18 . exon 644766 644823 . + . ID=Physo132015.4;Parent=Physo132015;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 644983 645054 . + 0 ID=Physo132015;Parent=Physo132015;rank=5 scaffold_18 . exon 644983 645054 . + . ID=Physo132015.5;Parent=Physo132015;constitutive=1;rank=5 scaffold_18 . CDS 645265 645564 . + 0 ID=Physo132015;Parent=Physo132015;rank=6 scaffold_18 . exon 645265 645564 . + . ID=Physo132015.6;Parent=Physo132015;constitutive=1;rank=6 scaffold_18 . CDS 645587 645703 . + 0 ID=Physo132015;Parent=Physo132015;rank=7 scaffold_18 . CDS 645745 645762 . + 0 ID=Physo132015;Parent=Physo132015;rank=8 scaffold_18 . repeat_region 647273 649486 . + . description=GypsyPi-1c_I-int scaffold_18 . biological_region 647326 647328 0.999 + . logic_name=eponine scaffold_18 . repeat_region 649756 650034 . + . description=GypsyPi-1c_I-int scaffold_18 . biological_region 650651 650653 0.999 - . logic_name=eponine scaffold_18 . biological_region 651171 651178 0.999 + . logic_name=eponine scaffold_18 . biological_region 651173 651173 0.999 - . logic_name=eponine scaffold_18 . repeat_region 651468 651772 . - . description=GypsyPi-1c_LTR scaffold_18 . repeat_region 653560 653637 . + . description=GypsyPi-1c_I-int scaffold_18 . biological_region 653977 653979 0.999 - . logic_name=eponine scaffold_18 . repeat_region 654204 654552 . - . description=GypsyPi-1c_I-int scaffold_18 . repeat_region 654730 654909 . - . description=GypsyPi-1c_I-int scaffold_18 . repeat_region 655225 656417 . - . description=GypsyPi-1c_I-int scaffold_18 . exon 645587 645703 . + . ID=Physo132015.7;Parent=Physo132015;constitutive=1;rank=7 scaffold_18 . exon 645745 645762 . + . ID=Physo132015.8;Parent=Physo132015;constitutive=1;rank=8 scaffold_18 ensembl protein_coding_gene 647440 649798 . + . ID=Physo132016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180125;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 647440 649798 . + . ID=Physo132016;Parent=Physo132016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 647440 648028 . + 0 ID=Physo132016;Parent=Physo132016;rank=1 scaffold_18 . exon 647440 648028 . + . ID=Physo132016.1;Parent=Physo132016;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 648050 648631 . + 0 ID=Physo132016;Parent=Physo132016;rank=2 scaffold_18 . exon 648050 648631 . + . ID=Physo132016.2;Parent=Physo132016;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 648710 649751 . + 0 ID=Physo132016;Parent=Physo132016;rank=3 scaffold_18 . exon 648710 649751 . + . ID=Physo132016.3;Parent=Physo132016;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_18 . CDS 649792 649798 . + 0 ID=Physo132016;Parent=Physo132016;rank=4 scaffold_18 . exon 649792 649798 . + . ID=Physo132016.4;Parent=Physo132016;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . repeat_region 657210 657370 . ? . description=trf scaffold_18 . repeat_region 660877 660921 . ? . description=trf scaffold_18 . repeat_region 661306 661316 . ? . description=dust scaffold_18 . repeat_region 661681 661800 . ? . description=trf scaffold_18 . repeat_region 661705 661792 . ? . description=dust scaffold_18 . repeat_region 662241 662249 . ? . description=dust scaffold_18 . repeat_region 664190 664234 . ? . description=trf scaffold_18 ensembl tRNA_gene 661953 662022 . + . ID=EPrPSOG00000000017;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_18 ensembl transcript 661953 662022 . + . ID=EPrPSOT00000000017;Parent=EPrPSOG00000000017;biotype=tRNA;logic_name=ncrna_eg scaffold_18 . exon 661953 662022 . + . ID=EPrPSOE00000000017;Parent=EPrPSOT00000000017;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 655376 656330 . - . ID=Physo132017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180126;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 655376 656330 . - . ID=Physo132017;Parent=Physo132017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 655376 655728 . - 0 ID=Physo132017;Parent=Physo132017;rank=2 scaffold_18 . exon 655376 655728 . - . ID=Physo132017.2;Parent=Physo132017;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 655766 656330 . - 0 ID=Physo132017;Parent=Physo132017;rank=1 scaffold_18 . exon 655766 656330 . - . ID=Physo132017.1;Parent=Physo132017;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 658147 660246 . - . ID=Physo132018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180127;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 658147 660246 . - . ID=Physo132018;Parent=Physo132018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 658147 658470 . - 0 ID=Physo132018;Parent=Physo132018;rank=5 scaffold_18 . exon 658147 658470 . - . ID=Physo132018.5;Parent=Physo132018;constitutive=1;rank=5 scaffold_18 . CDS 658502 658989 . - 0 ID=Physo132018;Parent=Physo132018;rank=4 scaffold_18 . exon 658502 658989 . - . ID=Physo132018.4;Parent=Physo132018;constitutive=1;ensembl_phase=1;rank=4 scaffold_18 . CDS 659101 659472 . - 0 ID=Physo132018;Parent=Physo132018;rank=3 scaffold_18 . exon 659101 659472 . - . ID=Physo132018.3;Parent=Physo132018;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_18 . CDS 659505 659747 . - 0 ID=Physo132018;Parent=Physo132018;rank=2 scaffold_18 . exon 659505 659747 . - . ID=Physo132018.2;Parent=Physo132018;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 660045 660246 . - 0 ID=Physo132018;Parent=Physo132018;rank=1 scaffold_18 . exon 660045 660246 . - . ID=Physo132018.1;Parent=Physo132018;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 ensembl protein_coding_gene 671115 672245 . - . ID=Physo132019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180128;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 671115 672245 . - . ID=Physo132019;Parent=Physo132019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 671115 671151 . - 0 ID=Physo132019;Parent=Physo132019;rank=4 scaffold_18 . exon 671115 671151 . - . ID=Physo132019.4;Parent=Physo132019;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 671252 671865 . - 0 ID=Physo132019;Parent=Physo132019;rank=3 scaffold_18 . exon 671252 671865 . - . ID=Physo132019.3;Parent=Physo132019;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 671950 672048 . - 0 ID=Physo132019;Parent=Physo132019;rank=2 scaffold_18 . exon 671950 672048 . - . ID=Physo132019.2;Parent=Physo132019;constitutive=1;rank=2 scaffold_18 . CDS 672129 672245 . - 0 ID=Physo132019;Parent=Physo132019;rank=1 scaffold_18 . exon 672129 672245 . - . ID=Physo132019.1;Parent=Physo132019;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 673549 675839 . - . ID=Physo132020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180129;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 673549 675839 . - . ID=Physo132020;Parent=Physo132020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 673549 674034 . - 0 ID=Physo132020;Parent=Physo132020;rank=4 scaffold_18 . exon 673549 674034 . - . ID=Physo132020.4;Parent=Physo132020;constitutive=1;rank=4 scaffold_18 . CDS 674098 674605 . - 0 ID=Physo132020;Parent=Physo132020;rank=3 scaffold_18 . exon 674098 674605 . - . ID=Physo132020.3;Parent=Physo132020;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 674690 674766 . - 0 ID=Physo132020;Parent=Physo132020;rank=2 scaffold_18 . exon 674690 674766 . - . ID=Physo132020.2;Parent=Physo132020;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 674796 675839 . - 0 ID=Physo132020;Parent=Physo132020;rank=1 scaffold_18 . exon 674796 675839 . - . ID=Physo132020.1;Parent=Physo132020;constitutive=1;rank=1 scaffold_18 . repeat_region 676215 676273 . ? . description=trf scaffold_18 . repeat_region 676283 676323 . ? . description=trf scaffold_18 . repeat_region 677883 677920 . ? . description=trf scaffold_18 . biological_region 679858 679862 0.999 + . logic_name=eponine scaffold_18 . biological_region 679873 679877 0.999 + . logic_name=eponine scaffold_18 . biological_region 679911 679917 0.999 + . logic_name=eponine scaffold_18 . biological_region 679935 679941 0.999 + . logic_name=eponine scaffold_18 . biological_region 679958 679965 0.999 + . logic_name=eponine scaffold_18 . biological_region 680018 680018 0.999 - . logic_name=eponine scaffold_18 . biological_region 680020 680020 0.999 + . logic_name=eponine scaffold_18 . biological_region 680039 680040 0.999 + . logic_name=eponine scaffold_18 . biological_region 680041 680051 0.999 - . logic_name=eponine scaffold_18 . biological_region 680106 680112 0.999 - . logic_name=eponine scaffold_18 . biological_region 680320 680322 0.999 + . logic_name=eponine scaffold_18 . repeat_region 680994 681016 . ? . description=dust scaffold_18 . repeat_region 680994 681016 . ? . description=trf scaffold_18 . repeat_region 681030 681079 . ? . description=dust scaffold_18 . repeat_region 682247 682543 . - . description=Sola3-2_PS scaffold_18 . repeat_region 684505 684512 . ? . description=dust scaffold_18 ensembl protein_coding_gene 679835 680635 . + . ID=Physo132021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180130;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 679835 680635 . + . ID=Physo132021;Parent=Physo132021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 679835 680635 . + 0 ID=Physo132021;Parent=Physo132021;rank=1 scaffold_18 . exon 679835 680635 . + . ID=Physo132021.1;Parent=Physo132021;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 681602 683527 . - . ID=Physo132022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180131;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 681602 683527 . - . ID=Physo132022;Parent=Physo132022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 681602 683527 . - 0 ID=Physo132022;Parent=Physo132022;rank=1 scaffold_18 . exon 681602 683527 . - . ID=Physo132022.1;Parent=Physo132022;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 690103 691958 . - . ID=Physo132023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180132;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 690103 691958 . - . ID=Physo132023;Parent=Physo132023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 690103 691958 . - . ID=Physo132023.1;Parent=Physo132023;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_18 . CDS 690162 691958 . - 0 ID=Physo132023;Parent=Physo132023;rank=1 scaffold_18 . repeat_region 697722 697907 . - . description=Sola3-2_PS scaffold_18 . biological_region 700318 700319 0.999 + . logic_name=eponine scaffold_18 . repeat_region 702547 702647 . ? . description=dust scaffold_18 ensembl protein_coding_gene 697103 698494 . - . ID=Physo132024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180133;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 697103 698494 . - . ID=Physo132024;Parent=Physo132024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 697103 698494 . - 0 ID=Physo132024;Parent=Physo132024;rank=1 scaffold_18 . exon 697103 698494 . - . ID=Physo132024.1;Parent=Physo132024;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 699480 703396 . + . ID=Physo132025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180134;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 699480 703396 . + . ID=Physo132025;Parent=Physo132025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 699480 702392 . + 0 ID=Physo132025;Parent=Physo132025;rank=1 scaffold_18 . exon 699480 702392 . + . ID=Physo132025.1;Parent=Physo132025;constitutive=1;rank=1 scaffold_18 . CDS 702679 703047 . + 0 ID=Physo132025;Parent=Physo132025;rank=2 scaffold_18 . exon 702679 703047 . + . ID=Physo132025.2;Parent=Physo132025;constitutive=1;rank=2 scaffold_18 . CDS 703070 703396 . + 0 ID=Physo132025;Parent=Physo132025;rank=3 scaffold_18 . exon 703070 703396 . + . ID=Physo132025.3;Parent=Physo132025;constitutive=1;rank=3 scaffold_18 . repeat_region 708098 708194 . ? . description=trf scaffold_18 . repeat_region 716971 717267 . + . description=Sola3-2_PS scaffold_18 . biological_region 718981 718983 0.999 - . logic_name=eponine scaffold_18 . biological_region 719191 719197 0.999 + . logic_name=eponine scaffold_18 . biological_region 719252 719262 0.999 + . logic_name=eponine scaffold_18 . biological_region 719263 719264 0.999 - . logic_name=eponine scaffold_18 . biological_region 719283 719283 0.999 - . logic_name=eponine scaffold_18 . biological_region 719285 719285 0.999 + . logic_name=eponine scaffold_18 . biological_region 719338 719345 0.999 - . logic_name=eponine scaffold_18 . biological_region 719362 719368 0.999 - . logic_name=eponine scaffold_18 . biological_region 719386 719392 0.999 - . logic_name=eponine scaffold_18 . biological_region 720756 720757 0.999 - . logic_name=eponine scaffold_18 . repeat_region 722271 722531 . - . description=Sola3-2_PS scaffold_18 . biological_region 724463 724464 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 716002 717906 . + . ID=Physo132026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180135;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 716002 717906 . + . ID=Physo132026;Parent=Physo132026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 716002 717906 . + 0 ID=Physo132026;Parent=Physo132026;rank=1 scaffold_18 . exon 716002 717906 . + . ID=Physo132026.1;Parent=Physo132026;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 718670 719464 . - . ID=Physo132027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180136;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 718670 719464 . - . ID=Physo132027;Parent=Physo132027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 718670 719464 . - 0 ID=Physo132027;Parent=Physo132027;rank=1 scaffold_18 . exon 718670 719464 . - . ID=Physo132027.1;Parent=Physo132027;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 721652 722068 . - . ID=Physo132028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180137;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 721652 722068 . - . ID=Physo132028;Parent=Physo132028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 721652 722068 . - 0 ID=Physo132028;Parent=Physo132028;rank=1 scaffold_18 . exon 721652 722068 . - . ID=Physo132028.1;Parent=Physo132028;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 722268 723008 . - . ID=Physo132029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180138;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 722268 723008 . - . ID=Physo132029;Parent=Physo132029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 722268 723008 . - 0 ID=Physo132029;Parent=Physo132029;rank=1 scaffold_18 . exon 722268 723008 . - . ID=Physo132029.1;Parent=Physo132029;constitutive=1;rank=1 scaffold_18 . repeat_region 727755 727827 . ? . description=trf scaffold_18 . repeat_region 727755 727841 . ? . description=trf scaffold_18 . repeat_region 727814 727842 . ? . description=trf scaffold_18 . repeat_region 731059 731067 . ? . description=dust scaffold_18 . repeat_region 733344 733393 . ? . description=dust scaffold_18 . repeat_region 734629 734671 . ? . description=trf scaffold_18 ensembl protein_coding_gene 731296 732881 . - . ID=Physo132030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180139;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 731296 732881 . - . ID=Physo132030;Parent=Physo132030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 731296 731977 . - 0 ID=Physo132030;Parent=Physo132030;rank=6 scaffold_18 . exon 731296 731977 . - . ID=Physo132030.6;Parent=Physo132030;constitutive=1;ensembl_phase=2;rank=6 scaffold_18 . CDS 732047 732199 . - 0 ID=Physo132030;Parent=Physo132030;rank=5 scaffold_18 . exon 732047 732199 . - . ID=Physo132030.5;Parent=Physo132030;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_18 . CDS 732414 732483 . - 0 ID=Physo132030;Parent=Physo132030;rank=4 scaffold_18 . exon 732414 732483 . - . ID=Physo132030.4;Parent=Physo132030;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_18 . CDS 732571 732575 . - 0 ID=Physo132030;Parent=Physo132030;rank=3 scaffold_18 . exon 732571 732575 . - . ID=Physo132030.3;Parent=Physo132030;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 732707 732746 . - 0 ID=Physo132030;Parent=Physo132030;rank=2 scaffold_18 . exon 732707 732746 . - . ID=Physo132030.2;Parent=Physo132030;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_18 . CDS 732794 732881 . - 0 ID=Physo132030;Parent=Physo132030;rank=1 scaffold_18 . exon 732794 732881 . - . ID=Physo132030.1;Parent=Physo132030;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . biological_region 741856 741856 0.999 - . logic_name=eponine scaffold_18 . biological_region 741891 741893 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 743676 745202 . - . ID=Physo132031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180140;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 743676 745202 . - . ID=Physo132031;Parent=Physo132031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 743676 743693 . - 0 ID=Physo132031;Parent=Physo132031;rank=6 scaffold_18 . exon 743676 743693 . - . ID=Physo132031.6;Parent=Physo132031;constitutive=1;rank=6 scaffold_18 . CDS 743735 743851 . - 0 ID=Physo132031;Parent=Physo132031;rank=5 scaffold_18 . exon 743735 743851 . - . ID=Physo132031.5;Parent=Physo132031;constitutive=1;rank=5 scaffold_18 . CDS 743874 744216 . - 0 ID=Physo132031;Parent=Physo132031;rank=4 scaffold_18 . exon 743874 744216 . - . ID=Physo132031.4;Parent=Physo132031;constitutive=1;ensembl_phase=2;rank=4 scaffold_18 . CDS 744585 744638 . - 0 ID=Physo132031;Parent=Physo132031;rank=3 scaffold_18 . exon 744585 744638 . - . ID=Physo132031.3;Parent=Physo132031;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_18 . CDS 744696 744872 . - 0 ID=Physo132031;Parent=Physo132031;rank=2 scaffold_18 . CDS 745135 745202 . - 0 ID=Physo132031;Parent=Physo132031;rank=1 scaffold_18 . repeat_region 745129 745227 . ? . description=trf scaffold_18 . repeat_region 745159 745219 . ? . description=dust scaffold_18 . repeat_region 747314 748183 . + . description=GypsyPi-1c_I-int scaffold_18 . repeat_region 748289 748514 . + . description=GypsyPi-1c_I-int scaffold_18 . repeat_region 749114 752064 . + . description=GypsyPi-1c_I-int scaffold_18 . repeat_region 752636 752770 . + . description=GypsyPi-1c_I-int scaffold_18 . exon 744696 744872 . - . ID=Physo132031.2;Parent=Physo132031;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_18 . exon 745135 745202 . - . ID=Physo132031.1;Parent=Physo132031;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 747134 751250 . + . ID=Physo132032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180141;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 747134 751250 . + . ID=Physo132032;Parent=Physo132032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 747134 747401 . + 0 ID=Physo132032;Parent=Physo132032;rank=1 scaffold_18 . exon 747134 747401 . + . ID=Physo132032.1;Parent=Physo132032;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_18 . CDS 747573 747802 . + 0 ID=Physo132032;Parent=Physo132032;rank=2 scaffold_18 . exon 747573 747802 . + . ID=Physo132032.2;Parent=Physo132032;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 747918 748054 . + 0 ID=Physo132032;Parent=Physo132032;rank=3 scaffold_18 . exon 747918 748054 . + . ID=Physo132032.3;Parent=Physo132032;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_18 . CDS 748513 748596 . + 0 ID=Physo132032;Parent=Physo132032;rank=4 scaffold_18 . exon 748513 748596 . + . ID=Physo132032.4;Parent=Physo132032;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_18 . CDS 748807 749314 . + 0 ID=Physo132032;Parent=Physo132032;rank=5 scaffold_18 . exon 748807 749314 . + . ID=Physo132032.5;Parent=Physo132032;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 . CDS 749442 749520 . + 0 ID=Physo132032;Parent=Physo132032;rank=6 scaffold_18 . exon 749442 749520 . + . ID=Physo132032.6;Parent=Physo132032;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_18 . CDS 749846 749865 . + 0 ID=Physo132032;Parent=Physo132032;rank=7 scaffold_18 . exon 749846 749865 . + . ID=Physo132032.7;Parent=Physo132032;constitutive=1;ensembl_phase=1;rank=7 scaffold_18 . CDS 750069 751250 . + 0 ID=Physo132032;Parent=Physo132032;rank=8 scaffold_18 . exon 750069 751250 . + . ID=Physo132032.8;Parent=Physo132032;constitutive=1;rank=8 scaffold_18 ensembl protein_coding_gene 752045 754153 . - . ID=Physo132033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180142;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 752045 754153 . - . ID=Physo132033;Parent=Physo132033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 752045 752725 . - 0 ID=Physo132033;Parent=Physo132033;rank=3 scaffold_18 . exon 752045 752725 . - . ID=Physo132033.3;Parent=Physo132033;constitutive=1;rank=3 scaffold_18 . CDS 752781 753296 . - 0 ID=Physo132033;Parent=Physo132033;rank=2 scaffold_18 . exon 752781 753296 . - . ID=Physo132033.2;Parent=Physo132033;constitutive=1;rank=2 scaffold_18 . CDS 753332 754153 . - 0 ID=Physo132033;Parent=Physo132033;rank=1 scaffold_18 . exon 753332 754153 . - . ID=Physo132033.1;Parent=Physo132033;constitutive=1;rank=1 scaffold_18 . biological_region 757863 757863 0.999 - . logic_name=eponine scaffold_18 . biological_region 759274 759278 0.999 + . logic_name=eponine scaffold_18 . biological_region 759304 759308 0.999 + . logic_name=eponine scaffold_18 . biological_region 759319 759324 0.999 - . logic_name=eponine scaffold_18 . biological_region 759408 759412 0.999 - . logic_name=eponine scaffold_18 . repeat_region 766556 766572 . ? . description=dust scaffold_18 . repeat_region 768313 768608 . + . description=Sola3-2_PS scaffold_18 . repeat_region 769189 769197 . ? . description=dust scaffold_18 . repeat_region 769197 769296 . ? . description=trf scaffold_18 . repeat_region 770168 770467 . - . description=Sola3-2_PS scaffold_18 . repeat_region 772027 772048 . ? . description=trf scaffold_18 . repeat_region 773474 773531 . ? . description=trf scaffold_18 ensembl protein_coding_gene 767782 768759 . + . ID=Physo132034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180143;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 767782 768759 . + . ID=Physo132034;Parent=Physo132034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 767782 768759 . + 0 ID=Physo132034;Parent=Physo132034;rank=1 scaffold_18 . exon 767782 768759 . + . ID=Physo132034.1;Parent=Physo132034;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 769527 771197 . - . ID=Physo132035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180144;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 769527 771197 . - . ID=Physo132035;Parent=Physo132035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 769527 771197 . - 0 ID=Physo132035;Parent=Physo132035;rank=1 scaffold_18 . exon 769527 771197 . - . ID=Physo132035.1;Parent=Physo132035;constitutive=1;rank=1 scaffold_18 . biological_region 776219 776223 0.999 - . logic_name=eponine scaffold_18 . biological_region 776238 776242 0.999 - . logic_name=eponine scaffold_18 . biological_region 776277 776277 0.999 + . logic_name=eponine scaffold_18 . biological_region 777070 777070 0.999 - . logic_name=eponine scaffold_18 . biological_region 778271 778276 0.999 - . logic_name=eponine scaffold_18 . biological_region 781878 781881 0.999 - . logic_name=eponine scaffold_18 . biological_region 781934 781936 0.999 + . logic_name=eponine scaffold_18 . biological_region 782036 782037 0.999 - . logic_name=eponine scaffold_18 . biological_region 782099 782099 0.999 + . logic_name=eponine scaffold_18 . biological_region 782213 782216 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 776086 776620 . - . ID=Physo132036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180145;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 776086 776620 . - . ID=Physo132036;Parent=Physo132036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 776086 776244 . - 0 ID=Physo132036;Parent=Physo132036;rank=3 scaffold_18 . exon 776086 776244 . - . ID=Physo132036.3;Parent=Physo132036;constitutive=1;rank=3 scaffold_18 . CDS 776281 776344 . - 0 ID=Physo132036;Parent=Physo132036;rank=2 scaffold_18 . exon 776281 776344 . - . ID=Physo132036.2;Parent=Physo132036;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 776526 776620 . - 0 ID=Physo132036;Parent=Physo132036;rank=1 scaffold_18 . exon 776526 776620 . - . ID=Physo132036.1;Parent=Physo132036;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 ensembl protein_coding_gene 779197 780120 . - . ID=Physo132037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180146;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 779197 780120 . - . ID=Physo132037;Parent=Physo132037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 779197 780120 . - 0 ID=Physo132037;Parent=Physo132037;rank=1 scaffold_18 . exon 779197 780120 . - . ID=Physo132037.1;Parent=Physo132037;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 780839 781300 . - . ID=Physo132038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180147;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 780839 781300 . - . ID=Physo132038;Parent=Physo132038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 780839 781300 . - 0 ID=Physo132038;Parent=Physo132038;rank=1 scaffold_18 . exon 780839 781300 . - . ID=Physo132038.1;Parent=Physo132038;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 781584 783102 . + . ID=Physo132039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180148;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 781584 783102 . + . ID=Physo132039;Parent=Physo132039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 781584 781871 . + 0 ID=Physo132039;Parent=Physo132039;rank=1 scaffold_18 . exon 781584 781871 . + . ID=Physo132039.1;Parent=Physo132039;constitutive=1;rank=1 scaffold_18 . CDS 781958 783004 . + 0 ID=Physo132039;Parent=Physo132039;rank=2 scaffold_18 . exon 781958 783004 . + . ID=Physo132039.2;Parent=Physo132039;constitutive=1;rank=2 scaffold_18 . CDS 783055 783102 . + 0 ID=Physo132039;Parent=Physo132039;rank=3 scaffold_18 . exon 783055 783102 . + . ID=Physo132039.3;Parent=Physo132039;constitutive=1;rank=3 scaffold_18 . repeat_region 786182 787446 . + . description=GypsyPi-1c_I-int scaffold_18 . repeat_region 787631 787911 . + . description=GypsyPi-1c_I-int scaffold_18 ensembl protein_coding_gene 785568 787673 . + . ID=Physo132040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180149;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 785568 787673 . + . ID=Physo132040;Parent=Physo132040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 785568 785774 . + 0 ID=Physo132040;Parent=Physo132040;rank=1 scaffold_18 . exon 785568 785774 . + . ID=Physo132040.1;Parent=Physo132040;constitutive=1;rank=1 scaffold_18 . CDS 785843 786832 . + 0 ID=Physo132040;Parent=Physo132040;rank=2 scaffold_18 . exon 785843 786832 . + . ID=Physo132040.2;Parent=Physo132040;constitutive=1;rank=2 scaffold_18 . CDS 786930 787334 . + 0 ID=Physo132040;Parent=Physo132040;rank=3 scaffold_18 . exon 786930 787334 . + . ID=Physo132040.3;Parent=Physo132040;constitutive=1;rank=3 scaffold_18 . CDS 787458 787673 . + 0 ID=Physo132040;Parent=Physo132040;rank=4 scaffold_18 . exon 787458 787673 . + . ID=Physo132040.4;Parent=Physo132040;constitutive=1;rank=4 scaffold_18 ensembl protein_coding_gene 803332 811667 . + . ID=Physo132041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180150;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 803332 811667 . + . ID=Physo132041;Parent=Physo132041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 803332 803558 . + 0 ID=Physo132041;Parent=Physo132041;rank=1 scaffold_18 . exon 803332 803558 . + . ID=Physo132041.1;Parent=Physo132041;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_18 . CDS 803711 804380 . + 0 ID=Physo132041;Parent=Physo132041;rank=2 scaffold_18 . exon 803711 804380 . + . ID=Physo132041.2;Parent=Physo132041;constitutive=1;ensembl_phase=2;rank=2 scaffold_18 . CDS 804502 805372 . + 0 ID=Physo132041;Parent=Physo132041;rank=3 scaffold_18 . CDS 805465 806257 . + 0 ID=Physo132041;Parent=Physo132041;rank=4 scaffold_18 . CDS 806277 806504 . + 0 ID=Physo132041;Parent=Physo132041;rank=5 scaffold_18 . CDS 806626 806982 . + 0 ID=Physo132041;Parent=Physo132041;rank=6 scaffold_18 . CDS 807104 809647 . + 0 ID=Physo132041;Parent=Physo132041;rank=7 scaffold_18 . CDS 809668 809978 . + 0 ID=Physo132041;Parent=Physo132041;rank=8 scaffold_18 . CDS 810262 810470 . + 0 ID=Physo132041;Parent=Physo132041;rank=9 scaffold_18 . CDS 810522 810833 . + 0 ID=Physo132041;Parent=Physo132041;rank=10 scaffold_18 . CDS 810873 811667 . + 0 ID=Physo132041;Parent=Physo132041;rank=11 scaffold_18 . biological_region 804669 804675 0.999 - . logic_name=eponine scaffold_18 . biological_region 804726 804729 0.999 + . logic_name=eponine scaffold_18 . biological_region 804994 804995 0.999 - . logic_name=eponine scaffold_18 . biological_region 805001 805009 0.999 + . logic_name=eponine scaffold_18 . biological_region 805048 805052 0.999 + . logic_name=eponine scaffold_18 . biological_region 805643 805646 0.999 + . logic_name=eponine scaffold_18 . biological_region 806202 806207 0.999 + . logic_name=eponine scaffold_18 . repeat_region 806205 808513 . + . description=GypsyPi-1c_I-int scaffold_18 . biological_region 807765 807767 0.999 - . logic_name=eponine scaffold_18 . biological_region 807802 807804 0.999 + . logic_name=eponine scaffold_18 . biological_region 808862 808867 0.999 - . logic_name=eponine scaffold_18 . biological_region 808918 808922 0.999 + . logic_name=eponine scaffold_18 . biological_region 809026 809030 0.999 + . logic_name=eponine scaffold_18 . biological_region 812371 812371 0.999 + . logic_name=eponine scaffold_18 . biological_region 812510 812514 0.999 - . logic_name=eponine scaffold_18 . biological_region 813787 813790 0.999 + . logic_name=eponine scaffold_18 . biological_region 813951 813952 0.999 - . logic_name=eponine scaffold_18 . exon 804502 805372 . + . ID=Physo132041.3;Parent=Physo132041;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_18 . exon 805465 806257 . + . ID=Physo132041.4;Parent=Physo132041;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_18 . exon 806277 806504 . + . ID=Physo132041.5;Parent=Physo132041;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_18 . exon 806626 806982 . + . ID=Physo132041.6;Parent=Physo132041;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_18 . exon 807104 809647 . + . ID=Physo132041.7;Parent=Physo132041;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_18 . exon 809668 809978 . + . ID=Physo132041.8;Parent=Physo132041;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_18 . exon 810262 810470 . + . ID=Physo132041.9;Parent=Physo132041;constitutive=1;ensembl_phase=1;rank=9 scaffold_18 . exon 810522 810833 . + . ID=Physo132041.10;Parent=Physo132041;constitutive=1;rank=10 scaffold_18 . exon 810873 811667 . + . ID=Physo132041.11;Parent=Physo132041;constitutive=1;rank=11 scaffold_18 ensembl protein_coding_gene 813766 815511 . + . ID=Physo132042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180151;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 813766 815511 . + . ID=Physo132042;Parent=Physo132042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 813766 815511 . + 0 ID=Physo132042;Parent=Physo132042;rank=1 scaffold_18 . exon 813766 815511 . + . ID=Physo132042.1;Parent=Physo132042;constitutive=1;rank=1 scaffold_18 . repeat_region 814349 814368 . ? . description=trf scaffold_18 . repeat_region 814682 814881 . + . description=Sola3-2_PS scaffold_18 . repeat_region 815507 815536 . ? . description=trf scaffold_18 . repeat_region 820986 820996 . ? . description=dust scaffold_18 . repeat_region 824758 824863 . + . description=(GA)n scaffold_18 . repeat_region 837073 837084 . ? . description=dust scaffold_18 . repeat_region 837670 837717 . ? . description=dust scaffold_18 . repeat_region 838543 838587 . ? . description=dust scaffold_18 . repeat_region 838550 838589 . ? . description=trf scaffold_18 . repeat_region 838553 838587 . ? . description=trf scaffold_18 . repeat_region 838910 838949 . ? . description=dust scaffold_18 . repeat_region 838910 838949 . ? . description=trf scaffold_18 . repeat_region 840423 840452 . ? . description=trf scaffold_18 . repeat_region 842789 842852 . ? . description=trf scaffold_18 . repeat_region 842922 843002 . ? . description=trf scaffold_18 . repeat_region 843492 843639 . ? . description=trf scaffold_18 . repeat_region 843641 843681 . ? . description=trf scaffold_18 . repeat_region 855665 855684 . ? . description=trf scaffold_18 . repeat_region 859882 860866 . ? . description=dust scaffold_18 . repeat_region 861521 861550 . ? . description=trf scaffold_18 . repeat_region 862442 863678 . ? . description=dust scaffold_18 . repeat_region 863679 863926 . ? . description=dust scaffold_18 ensembl protein_coding_gene 855317 856711 . + . ID=Physo132043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180152;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 855317 856711 . + . ID=Physo132043;Parent=Physo132043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 855317 856711 . + 0 ID=Physo132043;Parent=Physo132043;rank=1 scaffold_18 . exon 855317 856711 . + . ID=Physo132043.1;Parent=Physo132043;constitutive=1;rank=1 scaffold_18 . biological_region 871162 871166 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 869941 871762 . - . ID=Physo132044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180153;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 869941 871762 . - . ID=Physo132044;Parent=Physo132044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 869941 870393 . - 0 ID=Physo132044;Parent=Physo132044;rank=2 scaffold_18 . exon 869941 870393 . - . ID=Physo132044.2;Parent=Physo132044;constitutive=1;rank=2 scaffold_18 . CDS 870419 871762 . - 0 ID=Physo132044;Parent=Physo132044;rank=1 scaffold_18 . exon 870419 871762 . - . ID=Physo132044.1;Parent=Physo132044;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 873017 874024 . - . ID=Physo132045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180154;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 873017 874024 . - . ID=Physo132045;Parent=Physo132045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 873017 873261 . - 0 ID=Physo132045;Parent=Physo132045;rank=5 scaffold_18 . exon 873017 873261 . - . ID=Physo132045.5;Parent=Physo132045;constitutive=1;ensembl_phase=1;rank=5 scaffold_18 . CDS 873284 873419 . - 0 ID=Physo132045;Parent=Physo132045;rank=4 scaffold_18 . exon 873284 873419 . - . ID=Physo132045.4;Parent=Physo132045;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_18 . CDS 873464 873539 . - 0 ID=Physo132045;Parent=Physo132045;rank=3 scaffold_18 . exon 873464 873539 . - . ID=Physo132045.3;Parent=Physo132045;constitutive=1;ensembl_phase=2;rank=3 scaffold_18 . CDS 873588 873763 . - 0 ID=Physo132045;Parent=Physo132045;rank=2 scaffold_18 . exon 873588 873763 . - . ID=Physo132045.2;Parent=Physo132045;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_18 . CDS 873995 874024 . - 0 ID=Physo132045;Parent=Physo132045;rank=1 scaffold_18 . repeat_region 875770 882025 . ? . description=dust scaffold_18 . repeat_region 882802 882832 . ? . description=dust scaffold_18 . repeat_region 882808 882830 . ? . description=trf scaffold_18 . exon 873995 874024 . - . ID=Physo132045.1;Parent=Physo132045;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 882116 882562 . + . ID=Physo132046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180155;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 882116 882562 . + . ID=Physo132046;Parent=Physo132046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 882116 882562 . + 0 ID=Physo132046;Parent=Physo132046;rank=1 scaffold_18 . exon 882116 882562 . + . ID=Physo132046.1;Parent=Physo132046;constitutive=1;rank=1 scaffold_18 . biological_region 884478 884481 0.999 - . logic_name=eponine scaffold_18 . biological_region 884689 884689 0.999 + . logic_name=eponine scaffold_18 . biological_region 892380 892382 0.999 + . logic_name=eponine scaffold_18 . biological_region 893388 893392 0.999 - . logic_name=eponine scaffold_18 ensembl protein_coding_gene 884301 886777 . + . ID=Physo132047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180156;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 884301 886777 . + . ID=Physo132047;Parent=Physo132047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . exon 884301 884988 . + . ID=Physo132047.1;Parent=Physo132047;constitutive=1;ensembl_phase=-1;rank=1 scaffold_18 . CDS 884314 884988 . + 0 ID=Physo132047;Parent=Physo132047;rank=1 scaffold_18 . CDS 885130 885660 . + 0 ID=Physo132047;Parent=Physo132047;rank=2 scaffold_18 . exon 885130 885660 . + . ID=Physo132047.2;Parent=Physo132047;constitutive=1;rank=2 scaffold_18 . CDS 885738 885836 . + 0 ID=Physo132047;Parent=Physo132047;rank=3 scaffold_18 . exon 885738 885836 . + . ID=Physo132047.3;Parent=Physo132047;constitutive=1;rank=3 scaffold_18 . CDS 886158 886615 . + 0 ID=Physo132047;Parent=Physo132047;rank=4 scaffold_18 . exon 886158 886615 . + . ID=Physo132047.4;Parent=Physo132047;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_18 . CDS 886648 886777 . + 0 ID=Physo132047;Parent=Physo132047;rank=5 scaffold_18 . exon 886648 886777 . + . ID=Physo132047.5;Parent=Physo132047;constitutive=1;ensembl_phase=2;rank=5 scaffold_18 ensembl protein_coding_gene 889110 889802 . - . ID=Physo132049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180158;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 889110 889802 . - . ID=Physo132049;Parent=Physo132049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 889110 889439 . - 0 ID=Physo132049;Parent=Physo132049;rank=2 scaffold_18 . exon 889110 889439 . - . ID=Physo132049.2;Parent=Physo132049;constitutive=1;rank=2 scaffold_18 . CDS 889515 889802 . - 0 ID=Physo132049;Parent=Physo132049;rank=1 scaffold_18 . exon 889515 889802 . - . ID=Physo132049.1;Parent=Physo132049;constitutive=1;rank=1 scaffold_18 ensembl protein_coding_gene 892379 893409 . + . ID=Physo132050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_180159;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 892379 893409 . + . ID=Physo132050;Parent=Physo132050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 892379 893407 . + 0 ID=Physo132050;Parent=Physo132050;rank=1 scaffold_18 . exon 892379 893409 . + . ID=Physo132050.1;Parent=Physo132050;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_18 ensembl protein_coding_gene 886896 887679 . + . ID=Physo156432;biotype=protein_coding;external_name=C_scaffold_18000030;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 886896 887679 . + . ID=Physo156432;Parent=Physo156432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 886896 887054 . + 0 ID=Physo156432;Parent=Physo156432;rank=1 scaffold_18 . exon 886896 887054 . + . ID=Physo156432.1;Parent=Physo156432;constitutive=1;rank=1 scaffold_18 . CDS 887124 887468 . + 0 ID=Physo156432;Parent=Physo156432;rank=2 scaffold_18 . exon 887124 887468 . + . ID=Physo156432.2;Parent=Physo156432;constitutive=1;rank=2 scaffold_18 . CDS 887563 887679 . + 0 ID=Physo156432;Parent=Physo156432;rank=3 scaffold_18 . exon 887563 887679 . + . ID=Physo156432.3;Parent=Physo156432;constitutive=1;rank=3 scaffold_18 ensembl protein_coding_gene 887786 888764 . - . ID=Physo156434;biotype=protein_coding;external_name=C_scaffold_18000032;logic_name=jgi_physo1_1 scaffold_18 ensembl transcript 887786 888764 . - . ID=Physo156434;Parent=Physo156434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_18 . CDS 887786 888111 . - 0 ID=Physo156434;Parent=Physo156434;rank=2 scaffold_18 . exon 887786 888111 . - . ID=Physo156434.2;Parent=Physo156434;constitutive=1;ensembl_phase=1;rank=2 scaffold_18 . CDS 888161 888764 . - 0 ID=Physo156434;Parent=Physo156434;rank=1 scaffold_18 . exon 888161 888764 . - . ID=Physo156434.1;Parent=Physo156434;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_17 1 896624 scaffold_17 . repeat_region 750 758 . ? . description=dust scaffold_17 . repeat_region 1018 1026 . ? . description=dust scaffold_17 . repeat_region 1227 1251 . ? . description=trf scaffold_17 . biological_region 2993 2997 0.999 + . logic_name=eponine scaffold_17 . biological_region 3066 3067 0.999 + . logic_name=eponine scaffold_17 . biological_region 3345 3348 0.999 + . logic_name=eponine scaffold_17 . biological_region 3772 3774 0.999 + . logic_name=eponine scaffold_17 . biological_region 4537 4541 0.999 - . logic_name=eponine scaffold_17 . biological_region 6790 6794 0.999 + . logic_name=eponine scaffold_17 . repeat_region 8348 8546 . ? . description=trf scaffold_17 . biological_region 9618 9619 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 2949 5042 . + . ID=Physo131659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170001;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 2949 5042 . + . ID=Physo131659;Parent=Physo131659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 2949 5042 . + 0 ID=Physo131659;Parent=Physo131659;rank=1 scaffold_17 . exon 2949 5042 . + . ID=Physo131659.1;Parent=Physo131659;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 6143 12423 . - . ID=Physo131660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170002;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 6143 12423 . - . ID=Physo131660;Parent=Physo131660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 6143 6250 . - 0 ID=Physo131660;Parent=Physo131660;rank=5 scaffold_17 . exon 6143 6250 . - . ID=Physo131660.5;Parent=Physo131660;constitutive=1;rank=5 scaffold_17 . CDS 6322 9180 . - 0 ID=Physo131660;Parent=Physo131660;rank=4 scaffold_17 . exon 6322 9180 . - . ID=Physo131660.4;Parent=Physo131660;constitutive=1;rank=4 scaffold_17 . CDS 9267 9732 . - 0 ID=Physo131660;Parent=Physo131660;rank=3 scaffold_17 . exon 9267 9732 . - . ID=Physo131660.3;Parent=Physo131660;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 10109 11817 . - 0 ID=Physo131660;Parent=Physo131660;rank=2 scaffold_17 . CDS 11872 12423 . - 0 ID=Physo131660;Parent=Physo131660;rank=1 scaffold_17 . exon 10109 11817 . - . ID=Physo131660.2;Parent=Physo131660;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . exon 11872 12423 . - . ID=Physo131660.1;Parent=Physo131660;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 12552 14450 . + . ID=Physo131661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170003;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 12552 14450 . + . ID=Physo131661;Parent=Physo131661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 12552 12650 . + . ID=Physo131661.1;Parent=Physo131661;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 12563 12650 . + 0 ID=Physo131661;Parent=Physo131661;rank=1 scaffold_17 . CDS 12749 12817 . + 0 ID=Physo131661;Parent=Physo131661;rank=2 scaffold_17 . exon 12749 12817 . + . ID=Physo131661.2;Parent=Physo131661;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 13274 13498 . + 0 ID=Physo131661;Parent=Physo131661;rank=3 scaffold_17 . exon 13274 13498 . + . ID=Physo131661.3;Parent=Physo131661;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 13559 13798 . + 0 ID=Physo131661;Parent=Physo131661;rank=4 scaffold_17 . exon 13559 13798 . + . ID=Physo131661.4;Parent=Physo131661;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 13861 14450 . + 0 ID=Physo131661;Parent=Physo131661;rank=5 scaffold_17 . exon 13861 14450 . + . ID=Physo131661.5;Parent=Physo131661;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 ensembl protein_coding_gene 14623 16476 . - . ID=Physo131662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170004;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 14623 16476 . - . ID=Physo131662;Parent=Physo131662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 14623 16476 . - 0 ID=Physo131662;Parent=Physo131662;rank=1 scaffold_17 . exon 14623 16476 . - . ID=Physo131662.1;Parent=Physo131662;constitutive=1;rank=1 scaffold_17 . biological_region 20006 20009 0.999 + . logic_name=eponine scaffold_17 . repeat_region 22461 22510 . ? . description=dust scaffold_17 . repeat_region 24036 24044 . ? . description=dust scaffold_17 . repeat_region 24537 24558 . ? . description=trf scaffold_17 . biological_region 25208 25209 0.999 + . logic_name=eponine scaffold_17 . biological_region 25825 25828 0.999 + . logic_name=eponine scaffold_17 . repeat_region 28950 29255 . + . description=GypsyPi-1c_LTR scaffold_17 . repeat_region 29274 29322 . ? . description=trf scaffold_17 . repeat_region 29291 29355 . ? . description=trf scaffold_17 ensembl protein_coding_gene 20743 21795 . - . ID=Physo131663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170005;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 20743 21795 . - . ID=Physo131663;Parent=Physo131663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 20743 20745 . - 0 ID=Physo131663;Parent=Physo131663;rank=4 scaffold_17 . exon 20743 20745 . - . ID=Physo131663.4;Parent=Physo131663;constitutive=1;rank=4 scaffold_17 . CDS 20773 20845 . - 0 ID=Physo131663;Parent=Physo131663;rank=3 scaffold_17 . exon 20773 20845 . - . ID=Physo131663.3;Parent=Physo131663;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 20920 21248 . - 0 ID=Physo131663;Parent=Physo131663;rank=2 scaffold_17 . exon 20920 21248 . - . ID=Physo131663.2;Parent=Physo131663;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 21322 21795 . - 0 ID=Physo131663;Parent=Physo131663;rank=1 scaffold_17 . exon 21322 21795 . - . ID=Physo131663.1;Parent=Physo131663;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 26562 27614 . - . ID=Physo131664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170006;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 26562 27614 . - . ID=Physo131664;Parent=Physo131664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 26562 26564 . - 0 ID=Physo131664;Parent=Physo131664;rank=4 scaffold_17 . exon 26562 26564 . - . ID=Physo131664.4;Parent=Physo131664;constitutive=1;rank=4 scaffold_17 . CDS 26592 26664 . - 0 ID=Physo131664;Parent=Physo131664;rank=3 scaffold_17 . exon 26592 26664 . - . ID=Physo131664.3;Parent=Physo131664;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 26739 27067 . - 0 ID=Physo131664;Parent=Physo131664;rank=2 scaffold_17 . exon 26739 27067 . - . ID=Physo131664.2;Parent=Physo131664;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 27141 27614 . - 0 ID=Physo131664;Parent=Physo131664;rank=1 scaffold_17 . exon 27141 27614 . - . ID=Physo131664.1;Parent=Physo131664;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 31977 32363 . - . ID=Physo114004;biotype=protein_coding;external_name=estExt_Genewise1.C_170129;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 31977 32363 . - . ID=Physo114004;Parent=Physo114004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 31977 32348 . - 0 ID=Physo114004;Parent=Physo114004;rank=1 scaffold_17 . exon 31977 32363 . - . ID=Physo114004.1;Parent=Physo114004;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 32740 33260 . - . ID=Physo131665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170007;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 32740 33260 . - . ID=Physo131665;Parent=Physo131665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 32740 33045 . - 0 ID=Physo131665;Parent=Physo131665;rank=2 scaffold_17 . exon 32740 33045 . - . ID=Physo131665.2;Parent=Physo131665;constitutive=1;rank=2 scaffold_17 . CDS 33135 33260 . - 0 ID=Physo131665;Parent=Physo131665;rank=1 scaffold_17 . exon 33135 33260 . - . ID=Physo131665.1;Parent=Physo131665;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 33580 34242 . + . ID=Physo131666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170008;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 33580 34242 . + . ID=Physo131666;Parent=Physo131666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 33580 34242 . + 0 ID=Physo131666;Parent=Physo131666;rank=1 scaffold_17 . exon 33580 34242 . + . ID=Physo131666.1;Parent=Physo131666;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 38763 42460 . + . ID=Physo131667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170009;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 38763 42460 . + . ID=Physo131667;Parent=Physo131667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 38763 39109 . + 0 ID=Physo131667;Parent=Physo131667;rank=1 scaffold_17 . exon 38763 39109 . + . ID=Physo131667.1;Parent=Physo131667;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 39178 39761 . + 0 ID=Physo131667;Parent=Physo131667;rank=2 scaffold_17 . exon 39178 39761 . + . ID=Physo131667.2;Parent=Physo131667;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 39794 40922 . + 0 ID=Physo131667;Parent=Physo131667;rank=3 scaffold_17 . exon 39794 40922 . + . ID=Physo131667.3;Parent=Physo131667;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_17 . CDS 41186 41307 . + 0 ID=Physo131667;Parent=Physo131667;rank=4 scaffold_17 . CDS 41358 42460 . + 0 ID=Physo131667;Parent=Physo131667;rank=5 scaffold_17 . biological_region 40461 40462 0.999 - . logic_name=eponine scaffold_17 . biological_region 40943 40944 0.999 - . logic_name=eponine scaffold_17 . biological_region 41101 41105 0.999 - . logic_name=eponine scaffold_17 . biological_region 41268 41272 0.999 + . logic_name=eponine scaffold_17 . biological_region 41952 41956 0.999 + . logic_name=eponine scaffold_17 . repeat_region 43630 43679 . ? . description=dust scaffold_17 . biological_region 43909 43910 0.999 - . logic_name=eponine scaffold_17 . biological_region 44391 44392 0.999 - . logic_name=eponine scaffold_17 . biological_region 44549 44553 0.999 - . logic_name=eponine scaffold_17 . biological_region 44716 44720 0.999 + . logic_name=eponine scaffold_17 . biological_region 45400 45404 0.999 + . logic_name=eponine scaffold_17 . repeat_region 46272 46321 . ? . description=dust scaffold_17 . exon 41186 41307 . + . ID=Physo131667.4;Parent=Physo131667;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_17 . exon 41358 42460 . + . ID=Physo131667.5;Parent=Physo131667;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 ensembl protein_coding_gene 42737 43618 . - . ID=Physo131668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170010;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 42737 43618 . - . ID=Physo131668;Parent=Physo131668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 42737 43618 . - 0 ID=Physo131668;Parent=Physo131668;rank=1 scaffold_17 . exon 42737 43618 . - . ID=Physo131668.1;Parent=Physo131668;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 46122 49777 . - . ID=Physo131669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170011;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 46122 49777 . - . ID=Physo131669;Parent=Physo131669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 46122 46142 . - 0 ID=Physo131669;Parent=Physo131669;rank=6 scaffold_17 . exon 46122 46142 . - . ID=Physo131669.6;Parent=Physo131669;constitutive=1;rank=6 scaffold_17 . CDS 46327 47840 . - 0 ID=Physo131669;Parent=Physo131669;rank=5 scaffold_17 . exon 46327 47840 . - . ID=Physo131669.5;Parent=Physo131669;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 47915 48605 . - 0 ID=Physo131669;Parent=Physo131669;rank=4 scaffold_17 . exon 47915 48605 . - . ID=Physo131669.4;Parent=Physo131669;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_17 . CDS 48644 48656 . - 0 ID=Physo131669;Parent=Physo131669;rank=3 scaffold_17 . exon 48644 48656 . - . ID=Physo131669.3;Parent=Physo131669;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 48700 48824 . - 0 ID=Physo131669;Parent=Physo131669;rank=2 scaffold_17 . exon 48700 48824 . - . ID=Physo131669.2;Parent=Physo131669;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 48887 49777 . - 0 ID=Physo131669;Parent=Physo131669;rank=1 scaffold_17 . exon 48887 49777 . - . ID=Physo131669.1;Parent=Physo131669;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 53302 54667 . - . ID=Physo131670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170012;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 53302 54667 . - . ID=Physo131670;Parent=Physo131670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 53302 53867 . - 0 ID=Physo131670;Parent=Physo131670;rank=2 scaffold_17 . exon 53302 53867 . - . ID=Physo131670.2;Parent=Physo131670;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 54082 54667 . - 0 ID=Physo131670;Parent=Physo131670;rank=1 scaffold_17 . exon 54082 54667 . - . ID=Physo131670.1;Parent=Physo131670;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . biological_region 62228 62231 0.999 + . logic_name=eponine scaffold_17 . biological_region 64396 64398 0.999 + . logic_name=eponine scaffold_17 . repeat_region 65010 65025 . ? . description=dust scaffold_17 . biological_region 65491 65491 0.999 + . logic_name=eponine scaffold_17 . repeat_region 65788 65886 . ? . description=trf scaffold_17 . biological_region 65812 65812 0.999 + . logic_name=eponine scaffold_17 . biological_region 65850 65853 0.999 + . logic_name=eponine scaffold_17 . biological_region 65855 65860 0.999 - . logic_name=eponine scaffold_17 . biological_region 65892 65897 0.999 - . logic_name=eponine scaffold_17 . biological_region 65914 65918 0.999 + . logic_name=eponine scaffold_17 . repeat_region 66005 66048 . ? . description=trf scaffold_17 . biological_region 67884 67892 0.999 + . logic_name=eponine scaffold_17 . biological_region 68142 68147 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 64019 64710 . - . ID=Physo131671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170013;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 64019 64710 . - . ID=Physo131671;Parent=Physo131671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 64019 64259 . - 0 ID=Physo131671;Parent=Physo131671;rank=3 scaffold_17 . exon 64019 64259 . - . ID=Physo131671.3;Parent=Physo131671;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 64297 64484 . - 0 ID=Physo131671;Parent=Physo131671;rank=2 scaffold_17 . exon 64297 64484 . - . ID=Physo131671.2;Parent=Physo131671;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 64585 64710 . - 0 ID=Physo131671;Parent=Physo131671;rank=1 scaffold_17 . exon 64585 64710 . - . ID=Physo131671.1;Parent=Physo131671;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 69977 74750 . - . ID=Physo131672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170014;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 69977 74750 . - . ID=Physo131672;Parent=Physo131672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 69977 70018 . - 0 ID=Physo131672;Parent=Physo131672;rank=10 scaffold_17 . exon 69977 70018 . - . ID=Physo131672.10;Parent=Physo131672;constitutive=1;rank=10 scaffold_17 . CDS 70812 71175 . - 0 ID=Physo131672;Parent=Physo131672;rank=9 scaffold_17 . exon 70812 71175 . - . ID=Physo131672.9;Parent=Physo131672;constitutive=1;ensembl_phase=2;rank=9 scaffold_17 . CDS 71419 72116 . - 0 ID=Physo131672;Parent=Physo131672;rank=8 scaffold_17 . exon 71419 72116 . - . ID=Physo131672.8;Parent=Physo131672;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_17 . CDS 72598 72649 . - 0 ID=Physo131672;Parent=Physo131672;rank=7 scaffold_17 . exon 72598 72649 . - . ID=Physo131672.7;Parent=Physo131672;constitutive=1;ensembl_phase=2;rank=7 scaffold_17 . CDS 72850 72945 . - 0 ID=Physo131672;Parent=Physo131672;rank=6 scaffold_17 . exon 72850 72945 . - . ID=Physo131672.6;Parent=Physo131672;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_17 . CDS 73016 73279 . - 0 ID=Physo131672;Parent=Physo131672;rank=5 scaffold_17 . exon 73016 73279 . - . ID=Physo131672.5;Parent=Physo131672;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_17 . CDS 73398 73516 . - 0 ID=Physo131672;Parent=Physo131672;rank=4 scaffold_17 . exon 73398 73516 . - . ID=Physo131672.4;Parent=Physo131672;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_17 . CDS 73818 74273 . - 0 ID=Physo131672;Parent=Physo131672;rank=3 scaffold_17 . exon 73818 74273 . - . ID=Physo131672.3;Parent=Physo131672;constitutive=1;rank=3 scaffold_17 . CDS 74317 74538 . - 0 ID=Physo131672;Parent=Physo131672;rank=2 scaffold_17 . exon 74317 74538 . - . ID=Physo131672.2;Parent=Physo131672;constitutive=1;rank=2 scaffold_17 . CDS 74601 74750 . - 0 ID=Physo131672;Parent=Physo131672;rank=1 scaffold_17 . exon 74601 74750 . - . ID=Physo131672.1;Parent=Physo131672;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 78148 79050 . - . ID=Physo131674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170016;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 78148 79050 . - . ID=Physo131674;Parent=Physo131674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 78148 79050 . - 0 ID=Physo131674;Parent=Physo131674;rank=1 scaffold_17 . exon 78148 79050 . - . ID=Physo131674.1;Parent=Physo131674;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 76622 77823 . - . ID=Physo156337;biotype=protein_coding;external_name=C_scaffold_17000006;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 76622 77823 . - . ID=Physo156337;Parent=Physo156337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 76622 76894 . - 0 ID=Physo156337;Parent=Physo156337;rank=4 scaffold_17 . exon 76622 76894 . - . ID=Physo156337.4;Parent=Physo156337;constitutive=1;rank=4 scaffold_17 . CDS 76957 77253 . - 0 ID=Physo156337;Parent=Physo156337;rank=3 scaffold_17 . exon 76957 77253 . - . ID=Physo156337.3;Parent=Physo156337;constitutive=1;rank=3 scaffold_17 . CDS 77333 77512 . - 0 ID=Physo156337;Parent=Physo156337;rank=2 scaffold_17 . exon 77333 77512 . - . ID=Physo156337.2;Parent=Physo156337;constitutive=1;rank=2 scaffold_17 . CDS 77587 77823 . - 0 ID=Physo156337;Parent=Physo156337;rank=1 scaffold_17 . exon 77587 77823 . - . ID=Physo156337.1;Parent=Physo156337;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 79463 80612 . - . ID=Physo156338;biotype=protein_coding;external_name=C_scaffold_17000007;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 79463 80612 . - . ID=Physo156338;Parent=Physo156338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 79463 79741 . - 0 ID=Physo156338;Parent=Physo156338;rank=5 scaffold_17 . exon 79463 79741 . - . ID=Physo156338.5;Parent=Physo156338;constitutive=1;rank=5 scaffold_17 . CDS 79816 79932 . - 0 ID=Physo156338;Parent=Physo156338;rank=4 scaffold_17 . CDS 79965 80111 . - 0 ID=Physo156338;Parent=Physo156338;rank=3 scaffold_17 . CDS 80187 80354 . - 0 ID=Physo156338;Parent=Physo156338;rank=2 scaffold_17 . CDS 80379 80612 . - 0 ID=Physo156338;Parent=Physo156338;rank=1 scaffold_17 . biological_region 80950 80952 0.999 - . logic_name=eponine scaffold_17 . biological_region 85066 85070 0.999 + . logic_name=eponine scaffold_17 . biological_region 85093 85094 0.999 + . logic_name=eponine scaffold_17 . biological_region 85224 85224 0.999 + . logic_name=eponine scaffold_17 . biological_region 85300 85303 0.999 + . logic_name=eponine scaffold_17 . biological_region 85300 85304 0.999 - . logic_name=eponine scaffold_17 . biological_region 85307 85314 0.999 - . logic_name=eponine scaffold_17 . biological_region 85322 85327 0.999 - . logic_name=eponine scaffold_17 . biological_region 85388 85391 0.999 - . logic_name=eponine scaffold_17 . biological_region 87325 87329 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 83888 86805 . - . ID=Physo131676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170018;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 83888 86805 . - . ID=Physo131676;Parent=Physo131676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 83888 85474 . - 0 ID=Physo131676;Parent=Physo131676;rank=6 scaffold_17 . exon 83888 85474 . - . ID=Physo131676.6;Parent=Physo131676;constitutive=1;rank=6 scaffold_17 . CDS 85668 85871 . - 0 ID=Physo131676;Parent=Physo131676;rank=5 scaffold_17 . exon 85668 85871 . - . ID=Physo131676.5;Parent=Physo131676;constitutive=1;rank=5 scaffold_17 . CDS 85939 86235 . - 0 ID=Physo131676;Parent=Physo131676;rank=4 scaffold_17 . exon 85939 86235 . - . ID=Physo131676.4;Parent=Physo131676;constitutive=1;rank=4 scaffold_17 . CDS 86302 86481 . - 0 ID=Physo131676;Parent=Physo131676;rank=3 scaffold_17 . exon 86302 86481 . - . ID=Physo131676.3;Parent=Physo131676;constitutive=1;rank=3 scaffold_17 . CDS 86554 86647 . - 0 ID=Physo131676;Parent=Physo131676;rank=2 scaffold_17 . exon 86554 86647 . - . ID=Physo131676.2;Parent=Physo131676;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 86678 86805 . - 0 ID=Physo131676;Parent=Physo131676;rank=1 scaffold_17 . exon 86678 86805 . - . ID=Physo131676.1;Parent=Physo131676;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 87575 88941 . + . ID=Physo131677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170019;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 87575 88941 . + . ID=Physo131677;Parent=Physo131677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 87575 87584 . + 0 ID=Physo131677;Parent=Physo131677;rank=1 scaffold_17 . exon 87575 87584 . + . ID=Physo131677.1;Parent=Physo131677;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 87704 88695 . + 0 ID=Physo131677;Parent=Physo131677;rank=2 scaffold_17 . exon 87704 88695 . + . ID=Physo131677.2;Parent=Physo131677;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 88750 88941 . + 0 ID=Physo131677;Parent=Physo131677;rank=3 scaffold_17 . exon 88750 88941 . + . ID=Physo131677.3;Parent=Physo131677;constitutive=1;rank=3 scaffold_17 . exon 79816 79932 . - . ID=Physo156338.4;Parent=Physo156338;constitutive=1;rank=4 scaffold_17 . exon 79965 80111 . - . ID=Physo156338.3;Parent=Physo156338;constitutive=1;rank=3 scaffold_17 . exon 80187 80354 . - . ID=Physo156338.2;Parent=Physo156338;constitutive=1;rank=2 scaffold_17 . exon 80379 80612 . - . ID=Physo156338.1;Parent=Physo156338;constitutive=1;rank=1 scaffold_17 . repeat_region 97188 97231 . ? . description=trf scaffold_17 ensembl protein_coding_gene 94832 95721 . - . ID=Physo131678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170020;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 94832 95721 . - . ID=Physo131678;Parent=Physo131678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 94832 94915 . - 0 ID=Physo131678;Parent=Physo131678;rank=2 scaffold_17 . exon 94832 94915 . - . ID=Physo131678.2;Parent=Physo131678;constitutive=1;rank=2 scaffold_17 . CDS 95185 95721 . - 0 ID=Physo131678;Parent=Physo131678;rank=1 scaffold_17 . exon 95185 95721 . - . ID=Physo131678.1;Parent=Physo131678;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 96210 97249 . + . ID=Physo131679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170021;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 96210 97249 . + . ID=Physo131679;Parent=Physo131679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 96210 96440 . + 0 ID=Physo131679;Parent=Physo131679;rank=1 scaffold_17 . exon 96210 96440 . + . ID=Physo131679.1;Parent=Physo131679;constitutive=1;rank=1 scaffold_17 . CDS 96503 97249 . + 0 ID=Physo131679;Parent=Physo131679;rank=2 scaffold_17 . exon 96503 97249 . + . ID=Physo131679.2;Parent=Physo131679;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 98122 100089 . + . ID=Physo131680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170022;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 98122 100089 . + . ID=Physo131680;Parent=Physo131680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 98122 98166 . + 0 ID=Physo131680;Parent=Physo131680;rank=1 scaffold_17 . exon 98122 98166 . + . ID=Physo131680.1;Parent=Physo131680;constitutive=1;rank=1 scaffold_17 . CDS 98382 99516 . + 0 ID=Physo131680;Parent=Physo131680;rank=2 scaffold_17 . exon 98382 99516 . + . ID=Physo131680.2;Parent=Physo131680;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 99579 100018 . + 0 ID=Physo131680;Parent=Physo131680;rank=3 scaffold_17 . exon 99579 100018 . + . ID=Physo131680.3;Parent=Physo131680;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 100045 100089 . + 0 ID=Physo131680;Parent=Physo131680;rank=4 scaffold_17 ensembl protein_coding_gene 97809 98132 . - . ID=Physo156339;biotype=protein_coding;external_name=C_scaffold_17000008;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 97809 98132 . - . ID=Physo156339;Parent=Physo156339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 97809 98132 . - 0 ID=Physo156339;Parent=Physo156339;rank=1 scaffold_17 . exon 97809 98132 . - . ID=Physo156339.1;Parent=Physo156339;constitutive=1;rank=1 scaffold_17 . biological_region 99760 99761 0.999 - . logic_name=eponine scaffold_17 . biological_region 100446 100447 0.999 - . logic_name=eponine scaffold_17 . biological_region 100550 100554 0.999 - . logic_name=eponine scaffold_17 . biological_region 101572 101573 0.999 - . logic_name=eponine scaffold_17 . biological_region 101578 101578 0.999 - . logic_name=eponine scaffold_17 . biological_region 101632 101633 0.999 + . logic_name=eponine scaffold_17 . biological_region 101683 101683 0.999 - . logic_name=eponine scaffold_17 . biological_region 101711 101712 0.999 - . logic_name=eponine scaffold_17 . biological_region 101720 101722 0.999 + . logic_name=eponine scaffold_17 . biological_region 101726 101731 0.999 - . logic_name=eponine scaffold_17 . biological_region 101766 101770 0.999 + . logic_name=eponine scaffold_17 . biological_region 101792 101797 0.999 - . logic_name=eponine scaffold_17 . biological_region 101847 101847 0.999 - . logic_name=eponine scaffold_17 . biological_region 101998 102000 0.999 + . logic_name=eponine scaffold_17 . biological_region 102012 102012 0.999 + . logic_name=eponine scaffold_17 . biological_region 102016 102026 0.999 + . logic_name=eponine scaffold_17 . biological_region 102043 102049 0.999 + . logic_name=eponine scaffold_17 . biological_region 102052 102055 0.999 - . logic_name=eponine scaffold_17 . biological_region 102102 102102 0.999 - . logic_name=eponine scaffold_17 . biological_region 102110 102112 0.999 + . logic_name=eponine scaffold_17 . biological_region 102394 102401 0.999 + . logic_name=eponine scaffold_17 . biological_region 102415 102417 0.999 + . logic_name=eponine scaffold_17 . biological_region 102446 102450 0.999 + . logic_name=eponine scaffold_17 . biological_region 102498 102502 0.999 + . logic_name=eponine scaffold_17 . biological_region 102511 102513 0.999 - . logic_name=eponine scaffold_17 . biological_region 102573 102578 0.999 - . logic_name=eponine scaffold_17 . biological_region 103159 103166 0.999 - . logic_name=eponine scaffold_17 . biological_region 106495 106500 0.999 - . logic_name=eponine scaffold_17 . biological_region 109468 109469 0.999 + . logic_name=eponine scaffold_17 . exon 100045 100089 . + . ID=Physo131680.4;Parent=Physo131680;constitutive=1;rank=4 scaffold_17 ensembl protein_coding_gene 100353 102168 . - . ID=Physo131681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170023;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 100353 102168 . - . ID=Physo131681;Parent=Physo131681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 100353 102168 . - . ID=Physo131681.1;Parent=Physo131681;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_17 . CDS 100357 102168 . - 0 ID=Physo131681;Parent=Physo131681;rank=1 scaffold_17 ensembl protein_coding_gene 102405 103941 . + . ID=Physo156341;biotype=protein_coding;external_name=C_scaffold_17000010;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 102405 103941 . + . ID=Physo156341;Parent=Physo156341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 102405 102639 . + 0 ID=Physo156341;Parent=Physo156341;rank=1 scaffold_17 . exon 102405 102639 . + . ID=Physo156341.1;Parent=Physo156341;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 102679 103613 . + 0 ID=Physo156341;Parent=Physo156341;rank=2 scaffold_17 . exon 102679 103613 . + . ID=Physo156341.2;Parent=Physo156341;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 103687 103896 . + 0 ID=Physo156341;Parent=Physo156341;rank=3 scaffold_17 . exon 103687 103896 . + . ID=Physo156341.3;Parent=Physo156341;constitutive=1;rank=3 scaffold_17 . CDS 103918 103941 . + 0 ID=Physo156341;Parent=Physo156341;rank=4 scaffold_17 . exon 103918 103941 . + . ID=Physo156341.4;Parent=Physo156341;constitutive=1;rank=4 scaffold_17 ensembl protein_coding_gene 108315 109616 . + . ID=Physo156342;biotype=protein_coding;external_name=C_scaffold_17000011;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 108315 109616 . + . ID=Physo156342;Parent=Physo156342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 108315 108819 . + 0 ID=Physo156342;Parent=Physo156342;rank=1 scaffold_17 . exon 108315 108819 . + . ID=Physo156342.1;Parent=Physo156342;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 108865 109616 . + 0 ID=Physo156342;Parent=Physo156342;rank=2 scaffold_17 . exon 108865 109616 . + . ID=Physo156342.2;Parent=Physo156342;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . repeat_region 114028 114076 . ? . description=dust scaffold_17 ensembl protein_coding_gene 109666 115061 . - . ID=Physo156343;biotype=protein_coding;external_name=C_scaffold_17000012;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 109666 115061 . - . ID=Physo156343;Parent=Physo156343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 109666 109953 . - 0 ID=Physo156343;Parent=Physo156343;rank=18 scaffold_17 . exon 109666 109953 . - . ID=Physo156343.18;Parent=Physo156343;constitutive=1;rank=18 scaffold_17 . CDS 110022 110323 . - 0 ID=Physo156343;Parent=Physo156343;rank=17 scaffold_17 . exon 110022 110323 . - . ID=Physo156343.17;Parent=Physo156343;constitutive=1;ensembl_phase=1;rank=17 scaffold_17 . CDS 110426 110639 . - 0 ID=Physo156343;Parent=Physo156343;rank=16 scaffold_17 . exon 110426 110639 . - . ID=Physo156343.16;Parent=Physo156343;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_17 . CDS 110704 110981 . - 0 ID=Physo156343;Parent=Physo156343;rank=15 scaffold_17 . exon 110704 110981 . - . ID=Physo156343.15;Parent=Physo156343;constitutive=1;ensembl_phase=1;rank=15 scaffold_17 . CDS 111049 111181 . - 0 ID=Physo156343;Parent=Physo156343;rank=14 scaffold_17 . exon 111049 111181 . - . ID=Physo156343.14;Parent=Physo156343;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_17 . CDS 111246 111321 . - 0 ID=Physo156343;Parent=Physo156343;rank=13 scaffold_17 . exon 111246 111321 . - . ID=Physo156343.13;Parent=Physo156343;constitutive=1;ensembl_phase=2;rank=13 scaffold_17 . CDS 111390 111634 . - 0 ID=Physo156343;Parent=Physo156343;rank=12 scaffold_17 . exon 111390 111634 . - . ID=Physo156343.12;Parent=Physo156343;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_17 . CDS 111701 111793 . - 0 ID=Physo156343;Parent=Physo156343;rank=11 scaffold_17 . exon 111701 111793 . - . ID=Physo156343.11;Parent=Physo156343;constitutive=1;rank=11 scaffold_17 . CDS 111866 111934 . - 0 ID=Physo156343;Parent=Physo156343;rank=10 scaffold_17 . exon 111866 111934 . - . ID=Physo156343.10;Parent=Physo156343;constitutive=1;rank=10 scaffold_17 . CDS 112079 112183 . - 0 ID=Physo156343;Parent=Physo156343;rank=9 scaffold_17 . exon 112079 112183 . - . ID=Physo156343.9;Parent=Physo156343;constitutive=1;rank=9 scaffold_17 . CDS 112349 112822 . - 0 ID=Physo156343;Parent=Physo156343;rank=8 scaffold_17 . exon 112349 112822 . - . ID=Physo156343.8;Parent=Physo156343;constitutive=1;rank=8 scaffold_17 . CDS 112889 113323 . - 0 ID=Physo156343;Parent=Physo156343;rank=7 scaffold_17 . exon 112889 113323 . - . ID=Physo156343.7;Parent=Physo156343;constitutive=1;rank=7 scaffold_17 . CDS 113392 113490 . - 0 ID=Physo156343;Parent=Physo156343;rank=6 scaffold_17 . exon 113392 113490 . - . ID=Physo156343.6;Parent=Physo156343;constitutive=1;rank=6 scaffold_17 . CDS 113560 113701 . - 0 ID=Physo156343;Parent=Physo156343;rank=5 scaffold_17 . exon 113560 113701 . - . ID=Physo156343.5;Parent=Physo156343;constitutive=1;ensembl_phase=2;rank=5 scaffold_17 . CDS 113768 113946 . - 0 ID=Physo156343;Parent=Physo156343;rank=4 scaffold_17 . exon 113768 113946 . - . ID=Physo156343.4;Parent=Physo156343;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_17 . CDS 114081 114413 . - 0 ID=Physo156343;Parent=Physo156343;rank=3 scaffold_17 . exon 114081 114413 . - . ID=Physo156343.3;Parent=Physo156343;constitutive=1;rank=3 scaffold_17 . CDS 114489 114766 . - 0 ID=Physo156343;Parent=Physo156343;rank=2 scaffold_17 . exon 114489 114766 . - . ID=Physo156343.2;Parent=Physo156343;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 114851 115061 . - 0 ID=Physo156343;Parent=Physo156343;rank=1 scaffold_17 . exon 114851 115061 . - . ID=Physo156343.1;Parent=Physo156343;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 115815 120532 . - . ID=Physo156344;biotype=protein_coding;external_name=C_scaffold_17000013;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 115815 120532 . - . ID=Physo156344;Parent=Physo156344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 115815 115820 . - 0 ID=Physo156344;Parent=Physo156344;rank=10 scaffold_17 . exon 115815 115820 . - . ID=Physo156344.10;Parent=Physo156344;constitutive=1;rank=10 scaffold_17 . CDS 115858 116088 . - 0 ID=Physo156344;Parent=Physo156344;rank=9 scaffold_17 . exon 115858 116088 . - . ID=Physo156344.9;Parent=Physo156344;constitutive=1;rank=9 scaffold_17 . CDS 116151 116605 . - 0 ID=Physo156344;Parent=Physo156344;rank=8 scaffold_17 . exon 116151 116605 . - . ID=Physo156344.8;Parent=Physo156344;constitutive=1;ensembl_phase=1;rank=8 scaffold_17 . CDS 116688 117177 . - 0 ID=Physo156344;Parent=Physo156344;rank=7 scaffold_17 . exon 116688 117177 . - . ID=Physo156344.7;Parent=Physo156344;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_17 . CDS 117197 117615 . - 0 ID=Physo156344;Parent=Physo156344;rank=6 scaffold_17 . exon 117197 117615 . - . ID=Physo156344.6;Parent=Physo156344;constitutive=1;ensembl_phase=1;rank=6 scaffold_17 . CDS 117685 117794 . - 0 ID=Physo156344;Parent=Physo156344;rank=5 scaffold_17 . exon 117685 117794 . - . ID=Physo156344.5;Parent=Physo156344;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_17 . CDS 117882 118521 . - 0 ID=Physo156344;Parent=Physo156344;rank=4 scaffold_17 . exon 117882 118521 . - . ID=Physo156344.4;Parent=Physo156344;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_17 . CDS 118721 119310 . - 0 ID=Physo156344;Parent=Physo156344;rank=3 scaffold_17 . exon 118721 119310 . - . ID=Physo156344.3;Parent=Physo156344;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 119360 119973 . - 0 ID=Physo156344;Parent=Physo156344;rank=2 scaffold_17 . exon 119360 119973 . - . ID=Physo156344.2;Parent=Physo156344;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 120410 120532 . - 0 ID=Physo156344;Parent=Physo156344;rank=1 scaffold_17 . biological_region 120721 120721 0.999 + . logic_name=eponine scaffold_17 . biological_region 120970 120971 0.999 - . logic_name=eponine scaffold_17 . biological_region 121025 121025 0.999 + . logic_name=eponine scaffold_17 . biological_region 121033 121037 0.999 - . logic_name=eponine scaffold_17 . biological_region 122893 122896 0.999 - . logic_name=eponine scaffold_17 . repeat_region 124551 124593 . ? . description=trf scaffold_17 . biological_region 125541 125543 0.999 - . logic_name=eponine scaffold_17 . biological_region 128461 128461 0.999 + . logic_name=eponine scaffold_17 . biological_region 128755 128756 0.999 - . logic_name=eponine scaffold_17 . biological_region 128773 128777 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 128159 128908 . - . ID=Physo114037;biotype=protein_coding;external_name=estExt_Genewise1.C_170162;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 128159 128908 . - . ID=Physo114037;Parent=Physo114037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 128159 128803 . - 0 ID=Physo114037;Parent=Physo114037;rank=1 scaffold_17 . exon 128159 128908 . - . ID=Physo114037.1;Parent=Physo114037;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 121201 124050 . - . ID=Physo131686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170028;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 121201 124050 . - . ID=Physo131686;Parent=Physo131686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 121201 122493 . - . ID=Physo131686.2;Parent=Physo131686;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_17 . CDS 121202 122493 . - 0 ID=Physo131686;Parent=Physo131686;rank=2 scaffold_17 . CDS 122553 124050 . - 0 ID=Physo131686;Parent=Physo131686;rank=1 scaffold_17 . exon 122553 124050 . - . ID=Physo131686.1;Parent=Physo131686;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 125241 126098 . + . ID=Physo131687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170029;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 125241 126098 . + . ID=Physo131687;Parent=Physo131687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 125241 126098 . + 0 ID=Physo131687;Parent=Physo131687;rank=1 scaffold_17 . exon 125241 126098 . + . ID=Physo131687.1;Parent=Physo131687;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 126845 127894 . + . ID=Physo131688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170030;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 126845 127894 . + . ID=Physo131688;Parent=Physo131688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 126845 127141 . + 0 ID=Physo131688;Parent=Physo131688;rank=1 scaffold_17 . exon 126845 127141 . + . ID=Physo131688.1;Parent=Physo131688;constitutive=1;rank=1 scaffold_17 . CDS 127188 127892 . + 0 ID=Physo131688;Parent=Physo131688;rank=2 scaffold_17 . exon 127188 127894 . + . ID=Physo131688.2;Parent=Physo131688;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_17 . exon 120410 120532 . - . ID=Physo156344.1;Parent=Physo156344;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 129008 135651 . - . ID=Physo156345;biotype=protein_coding;external_name=C_scaffold_17000014;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 129008 135651 . - . ID=Physo156345;Parent=Physo156345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 129008 130035 . - 0 ID=Physo156345;Parent=Physo156345;rank=13 scaffold_17 . exon 129008 130035 . - . ID=Physo156345.13;Parent=Physo156345;constitutive=1;ensembl_phase=1;rank=13 scaffold_17 . CDS 130105 130733 . - 0 ID=Physo156345;Parent=Physo156345;rank=12 scaffold_17 . CDS 131016 132194 . - 0 ID=Physo156345;Parent=Physo156345;rank=11 scaffold_17 . CDS 132566 132798 . - 0 ID=Physo156345;Parent=Physo156345;rank=10 scaffold_17 . CDS 132838 133086 . - 0 ID=Physo156345;Parent=Physo156345;rank=9 scaffold_17 . CDS 133117 133356 . - 0 ID=Physo156345;Parent=Physo156345;rank=8 scaffold_17 . CDS 133399 133680 . - 0 ID=Physo156345;Parent=Physo156345;rank=7 scaffold_17 . CDS 133702 133903 . - 0 ID=Physo156345;Parent=Physo156345;rank=6 scaffold_17 . CDS 134075 134311 . - 0 ID=Physo156345;Parent=Physo156345;rank=5 scaffold_17 . CDS 134402 134662 . - 0 ID=Physo156345;Parent=Physo156345;rank=4 scaffold_17 . CDS 134924 135186 . - 0 ID=Physo156345;Parent=Physo156345;rank=3 scaffold_17 . CDS 135214 135363 . - 0 ID=Physo156345;Parent=Physo156345;rank=2 scaffold_17 . CDS 135394 135651 . - 0 ID=Physo156345;Parent=Physo156345;rank=1 scaffold_17 ensembl protein_coding_gene 136921 140274 . + . ID=Physo108579;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170003;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 136921 140274 . + . ID=Physo108579;Parent=Physo108579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 136921 140274 . + 0 ID=Physo108579;Parent=Physo108579;rank=1 scaffold_17 . exon 136921 140274 . + . ID=Physo108579.1;Parent=Physo108579;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 136149 136803 . + . ID=Physo131692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170034;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 136149 136803 . + . ID=Physo131692;Parent=Physo131692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 136149 136472 . + 0 ID=Physo131692;Parent=Physo131692;rank=1 scaffold_17 . exon 136149 136472 . + . ID=Physo131692.1;Parent=Physo131692;constitutive=1;rank=1 scaffold_17 . CDS 136510 136803 . + 0 ID=Physo131692;Parent=Physo131692;rank=2 scaffold_17 . exon 136510 136803 . + . ID=Physo131692.2;Parent=Physo131692;constitutive=1;rank=2 scaffold_17 . exon 130105 130733 . - . ID=Physo156345.12;Parent=Physo156345;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_17 . exon 131016 132194 . - . ID=Physo156345.11;Parent=Physo156345;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_17 . exon 132566 132798 . - . ID=Physo156345.10;Parent=Physo156345;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_17 . exon 132838 133086 . - . ID=Physo156345.9;Parent=Physo156345;constitutive=1;rank=9 scaffold_17 . exon 133117 133356 . - . ID=Physo156345.8;Parent=Physo156345;constitutive=1;rank=8 scaffold_17 . exon 133399 133680 . - . ID=Physo156345.7;Parent=Physo156345;constitutive=1;rank=7 scaffold_17 . exon 133702 133903 . - . ID=Physo156345.6;Parent=Physo156345;constitutive=1;ensembl_phase=2;rank=6 scaffold_17 . exon 134075 134311 . - . ID=Physo156345.5;Parent=Physo156345;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_17 . exon 134402 134662 . - . ID=Physo156345.4;Parent=Physo156345;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_17 . exon 134924 135186 . - . ID=Physo156345.3;Parent=Physo156345;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . exon 135214 135363 . - . ID=Physo156345.2;Parent=Physo156345;constitutive=1;rank=2 scaffold_17 . exon 135394 135651 . - . ID=Physo156345.1;Parent=Physo156345;constitutive=1;rank=1 scaffold_17 . biological_region 139646 139648 0.999 + . logic_name=eponine scaffold_17 . biological_region 139666 139667 0.999 + . logic_name=eponine scaffold_17 . biological_region 139961 139961 0.999 - . logic_name=eponine scaffold_17 . biological_region 146592 146594 0.999 + . logic_name=eponine scaffold_17 . biological_region 148542 148547 0.999 + . logic_name=eponine scaffold_17 . biological_region 148635 148636 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 143344 144413 . - . ID=Physo156347;biotype=protein_coding;external_name=C_scaffold_17000016;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 143344 144413 . - . ID=Physo156347;Parent=Physo156347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 143344 143825 . - 0 ID=Physo156347;Parent=Physo156347;rank=3 scaffold_17 . exon 143344 143825 . - . ID=Physo156347.3;Parent=Physo156347;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 143897 144031 . - 0 ID=Physo156347;Parent=Physo156347;rank=2 scaffold_17 . exon 143897 144031 . - . ID=Physo156347.2;Parent=Physo156347;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 144185 144413 . - 0 ID=Physo156347;Parent=Physo156347;rank=1 scaffold_17 . exon 144185 144413 . - . ID=Physo156347.1;Parent=Physo156347;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 144923 149860 . + . ID=Physo156348;biotype=protein_coding;external_name=C_scaffold_17000017;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 144923 149860 . + . ID=Physo156348;Parent=Physo156348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 144923 145044 . + 0 ID=Physo156348;Parent=Physo156348;rank=1 scaffold_17 . exon 144923 145044 . + . ID=Physo156348.1;Parent=Physo156348;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 145095 145592 . + 0 ID=Physo156348;Parent=Physo156348;rank=2 scaffold_17 . exon 145095 145592 . + . ID=Physo156348.2;Parent=Physo156348;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 145734 146297 . + 0 ID=Physo156348;Parent=Physo156348;rank=3 scaffold_17 . exon 145734 146297 . + . ID=Physo156348.3;Parent=Physo156348;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_17 . CDS 146365 147592 . + 0 ID=Physo156348;Parent=Physo156348;rank=4 scaffold_17 . exon 146365 147592 . + . ID=Physo156348.4;Parent=Physo156348;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 147734 149860 . + 0 ID=Physo156348;Parent=Physo156348;rank=5 scaffold_17 . exon 147734 149860 . + . ID=Physo156348.5;Parent=Physo156348;constitutive=1;rank=5 scaffold_17 . repeat_region 151505 151535 . ? . description=trf scaffold_17 . repeat_region 153521 153544 . ? . description=trf scaffold_17 . repeat_region 156161 156211 . ? . description=dust scaffold_17 . repeat_region 156177 156212 . ? . description=trf scaffold_17 ensembl protein_coding_gene 154155 154862 . + . ID=Physo108581;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170005;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 154155 154862 . + . ID=Physo108581;Parent=Physo108581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 154155 154174 . + 0 ID=Physo108581;Parent=Physo108581;rank=1 scaffold_17 . exon 154155 154174 . + . ID=Physo108581.1;Parent=Physo108581;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 154292 154411 . + 0 ID=Physo108581;Parent=Physo108581;rank=2 scaffold_17 . exon 154292 154411 . + . ID=Physo108581.2;Parent=Physo108581;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 154496 154862 . + 0 ID=Physo108581;Parent=Physo108581;rank=3 scaffold_17 . exon 154496 154862 . + . ID=Physo108581.3;Parent=Physo108581;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 ensembl protein_coding_gene 152975 153474 . - . ID=Physo131698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170040;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 152975 153474 . - . ID=Physo131698;Parent=Physo131698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 152975 153474 . - . ID=Physo131698.1;Parent=Physo131698;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_17 . CDS 152992 153474 . - 0 ID=Physo131698;Parent=Physo131698;rank=1 scaffold_17 ensembl protein_coding_gene 154979 156082 . - . ID=Physo131700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170042;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 154979 156082 . - . ID=Physo131700;Parent=Physo131700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 154979 156082 . - 0 ID=Physo131700;Parent=Physo131700;rank=1 scaffold_17 . exon 154979 156082 . - . ID=Physo131700.1;Parent=Physo131700;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 156659 158089 . - . ID=Physo131701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170043;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 156659 158089 . - . ID=Physo131701;Parent=Physo131701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 156659 158023 . - 0 ID=Physo131701;Parent=Physo131701;rank=2 scaffold_17 . exon 156659 158023 . - . ID=Physo131701.2;Parent=Physo131701;constitutive=1;rank=2 scaffold_17 . CDS 158066 158089 . - 0 ID=Physo131701;Parent=Physo131701;rank=1 scaffold_17 . exon 158066 158089 . - . ID=Physo131701.1;Parent=Physo131701;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 158393 159481 . + . ID=Physo131702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170044;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 158393 159481 . + . ID=Physo131702;Parent=Physo131702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 158393 159481 . + 0 ID=Physo131702;Parent=Physo131702;rank=1 scaffold_17 . exon 158393 159481 . + . ID=Physo131702.1;Parent=Physo131702;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 150009 151912 . - . ID=Physo156350;biotype=protein_coding;external_name=C_scaffold_17000019;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 150009 151912 . - . ID=Physo156350;Parent=Physo156350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 150009 150272 . - 0 ID=Physo156350;Parent=Physo156350;rank=4 scaffold_17 . exon 150009 150272 . - . ID=Physo156350.4;Parent=Physo156350;constitutive=1;rank=4 scaffold_17 . CDS 150333 150481 . - 0 ID=Physo156350;Parent=Physo156350;rank=3 scaffold_17 . exon 150333 150481 . - . ID=Physo156350.3;Parent=Physo156350;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 150620 151083 . - 0 ID=Physo156350;Parent=Physo156350;rank=2 scaffold_17 . exon 150620 151083 . - . ID=Physo156350.2;Parent=Physo156350;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 151149 151912 . - 0 ID=Physo156350;Parent=Physo156350;rank=1 scaffold_17 . exon 151149 151912 . - . ID=Physo156350.1;Parent=Physo156350;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . biological_region 161857 161865 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 159598 160305 . - . ID=Physo108582;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170006;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 159598 160305 . - . ID=Physo108582;Parent=Physo108582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 159598 159964 . - 0 ID=Physo108582;Parent=Physo108582;rank=3 scaffold_17 . exon 159598 159964 . - . ID=Physo108582.3;Parent=Physo108582;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 160049 160168 . - 0 ID=Physo108582;Parent=Physo108582;rank=2 scaffold_17 . exon 160049 160168 . - . ID=Physo108582.2;Parent=Physo108582;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 160286 160305 . - 0 ID=Physo108582;Parent=Physo108582;rank=1 scaffold_17 . exon 160286 160305 . - . ID=Physo108582.1;Parent=Physo108582;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 160986 161514 . + . ID=Physo131704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170046;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 160986 161514 . + . ID=Physo131704;Parent=Physo131704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 160986 161468 . + 0 ID=Physo131704;Parent=Physo131704;rank=1 scaffold_17 . exon 160986 161514 . + . ID=Physo131704.1;Parent=Physo131704;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 161645 164272 . - . ID=Physo131705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170047;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 161645 164272 . - . ID=Physo131705;Parent=Physo131705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 161645 164272 . - 0 ID=Physo131705;Parent=Physo131705;rank=1 scaffold_17 . exon 161645 164272 . - . ID=Physo131705.1;Parent=Physo131705;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 166501 173829 . - . ID=Physo131706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170048;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 166501 173829 . - . ID=Physo131706;Parent=Physo131706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 166501 166550 . - 0 ID=Physo131706;Parent=Physo131706;rank=13 scaffold_17 . exon 166501 166550 . - . ID=Physo131706.14;Parent=Physo131706;constitutive=1;ensembl_phase=1;rank=14 scaffold_17 . CDS 166618 168886 . - 0 ID=Physo131706;Parent=Physo131706;rank=12 scaffold_17 . exon 166618 168886 . - . ID=Physo131706.13;Parent=Physo131706;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_17 . CDS 168956 169064 . - 0 ID=Physo131706;Parent=Physo131706;rank=11 scaffold_17 . exon 168956 169064 . - . ID=Physo131706.12;Parent=Physo131706;constitutive=1;ensembl_phase=2;rank=12 scaffold_17 . CDS 169131 169326 . - 0 ID=Physo131706;Parent=Physo131706;rank=10 scaffold_17 . exon 169131 169326 . - . ID=Physo131706.11;Parent=Physo131706;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_17 . CDS 169361 169511 . - 0 ID=Physo131706;Parent=Physo131706;rank=9 scaffold_17 . exon 169361 169511 . - . ID=Physo131706.10;Parent=Physo131706;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_17 . CDS 169610 169803 . - 0 ID=Physo131706;Parent=Physo131706;rank=8 scaffold_17 . CDS 169868 170485 . - 0 ID=Physo131706;Parent=Physo131706;rank=7 scaffold_17 . CDS 170512 170575 . - 0 ID=Physo131706;Parent=Physo131706;rank=6 scaffold_17 . CDS 170659 170843 . - 0 ID=Physo131706;Parent=Physo131706;rank=5 scaffold_17 . CDS 170907 171824 . - 0 ID=Physo131706;Parent=Physo131706;rank=4 scaffold_17 . CDS 171895 172124 . - 0 ID=Physo131706;Parent=Physo131706;rank=3 scaffold_17 . CDS 172339 172634 . - 0 ID=Physo131706;Parent=Physo131706;rank=2 scaffold_17 . CDS 172664 173086 . - 0 ID=Physo131706;Parent=Physo131706;rank=1 scaffold_17 . repeat_region 170615 170634 . ? . description=dust scaffold_17 . repeat_region 174269 174300 . ? . description=trf scaffold_17 . repeat_region 174440 174447 . ? . description=dust scaffold_17 . repeat_region 175442 175501 . ? . description=trf scaffold_17 . exon 169610 169803 . - . ID=Physo131706.9;Parent=Physo131706;constitutive=1;ensembl_phase=1;rank=9 scaffold_17 . exon 169868 170485 . - . ID=Physo131706.8;Parent=Physo131706;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_17 . exon 170512 170575 . - . ID=Physo131706.7;Parent=Physo131706;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_17 . exon 170659 170843 . - . ID=Physo131706.6;Parent=Physo131706;constitutive=1;ensembl_phase=1;rank=6 scaffold_17 . exon 170907 171824 . - . ID=Physo131706.5;Parent=Physo131706;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_17 . exon 171895 172124 . - . ID=Physo131706.4;Parent=Physo131706;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_17 . exon 172339 172634 . - . ID=Physo131706.3;Parent=Physo131706;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . exon 172664 173115 . - . ID=Physo131706.2;Parent=Physo131706;constitutive=1;ensembl_phase=-1;rank=2 scaffold_17 . exon 173297 173829 . - . ID=Physo131706.1;Parent=Physo131706;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 174368 175732 . + . ID=Physo131708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170050;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 174368 175732 . + . ID=Physo131708;Parent=Physo131708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 174368 175068 . + . ID=Physo131708.1;Parent=Physo131708;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 174379 175068 . + 0 ID=Physo131708;Parent=Physo131708;rank=1 scaffold_17 . CDS 175144 175252 . + 0 ID=Physo131708;Parent=Physo131708;rank=2 scaffold_17 . exon 175144 175252 . + . ID=Physo131708.2;Parent=Physo131708;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 175320 175732 . + 0 ID=Physo131708;Parent=Physo131708;rank=3 scaffold_17 . exon 175320 175732 . + . ID=Physo131708.3;Parent=Physo131708;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 176603 178149 . - . ID=Physo131709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170051;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 176603 178149 . - . ID=Physo131709;Parent=Physo131709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 176603 176729 . - 0 ID=Physo131709;Parent=Physo131709;rank=3 scaffold_17 . exon 176603 176729 . - . ID=Physo131709.3;Parent=Physo131709;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 176759 177041 . - 0 ID=Physo131709;Parent=Physo131709;rank=2 scaffold_17 . exon 176759 177041 . - . ID=Physo131709.2;Parent=Physo131709;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_17 . CDS 177084 178149 . - 0 ID=Physo131709;Parent=Physo131709;rank=1 scaffold_17 . exon 177084 178149 . - . ID=Physo131709.1;Parent=Physo131709;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . biological_region 180198 180202 0.999 + . logic_name=eponine scaffold_17 . biological_region 180252 180255 0.999 - . logic_name=eponine scaffold_17 . biological_region 182085 182089 0.999 + . logic_name=eponine scaffold_17 . biological_region 182115 182116 0.999 - . logic_name=eponine scaffold_17 . biological_region 182950 182954 0.999 + . logic_name=eponine scaffold_17 . biological_region 184954 184958 0.999 - . logic_name=eponine scaffold_17 . biological_region 187441 187441 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 186074 188210 . - . ID=Physo114071;biotype=protein_coding;external_name=estExt_Genewise1.C_170196;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 186074 188210 . - . ID=Physo114071;Parent=Physo114071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 186074 186321 . - 0 ID=Physo114071;Parent=Physo114071;rank=4 scaffold_17 . exon 186074 186321 . - . ID=Physo114071.5;Parent=Physo114071;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 186403 186830 . - 0 ID=Physo114071;Parent=Physo114071;rank=3 scaffold_17 . exon 186403 186830 . - . ID=Physo114071.4;Parent=Physo114071;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 186987 187909 . - 0 ID=Physo114071;Parent=Physo114071;rank=2 scaffold_17 . exon 186987 187909 . - . ID=Physo114071.3;Parent=Physo114071;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 187992 188075 . - 0 ID=Physo114071;Parent=Physo114071;rank=1 scaffold_17 . exon 187992 188099 . - . ID=Physo114071.2;Parent=Physo114071;constitutive=1;ensembl_phase=-1;rank=2 scaffold_17 . exon 188178 188210 . - . ID=Physo114071.1;Parent=Physo114071;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 179393 180196 . - . ID=Physo131710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170052;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 179393 180196 . - . ID=Physo131710;Parent=Physo131710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 179393 180196 . - 0 ID=Physo131710;Parent=Physo131710;rank=1 scaffold_17 . exon 179393 180196 . - . ID=Physo131710.1;Parent=Physo131710;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 180643 181428 . - . ID=Physo131711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170053;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 180643 181428 . - . ID=Physo131711;Parent=Physo131711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 180643 181428 . - 0 ID=Physo131711;Parent=Physo131711;rank=1 scaffold_17 . exon 180643 181428 . - . ID=Physo131711.1;Parent=Physo131711;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 181870 184140 . + . ID=Physo131712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170054;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 181870 184140 . + . ID=Physo131712;Parent=Physo131712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 181870 181946 . + 0 ID=Physo131712;Parent=Physo131712;rank=1 scaffold_17 . exon 181870 181946 . + . ID=Physo131712.1;Parent=Physo131712;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 182028 182130 . + 0 ID=Physo131712;Parent=Physo131712;rank=2 scaffold_17 . exon 182028 182130 . + . ID=Physo131712.2;Parent=Physo131712;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 182255 182887 . + 0 ID=Physo131712;Parent=Physo131712;rank=3 scaffold_17 . exon 182255 182887 . + . ID=Physo131712.3;Parent=Physo131712;constitutive=1;rank=3 scaffold_17 . CDS 183028 184140 . + 0 ID=Physo131712;Parent=Physo131712;rank=4 scaffold_17 . exon 183028 184140 . + . ID=Physo131712.4;Parent=Physo131712;constitutive=1;rank=4 scaffold_17 ensembl protein_coding_gene 189154 192977 . + . ID=Physo131714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170056;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 189154 192977 . + . ID=Physo131714;Parent=Physo131714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 189154 189539 . + 0 ID=Physo131714;Parent=Physo131714;rank=1 scaffold_17 . exon 189154 189539 . + . ID=Physo131714.1;Parent=Physo131714;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 189678 190229 . + 0 ID=Physo131714;Parent=Physo131714;rank=2 scaffold_17 . CDS 190362 190404 . + 0 ID=Physo131714;Parent=Physo131714;rank=3 scaffold_17 . CDS 190485 192977 . + 0 ID=Physo131714;Parent=Physo131714;rank=4 scaffold_17 . repeat_region 198261 198375 . ? . description=dust scaffold_17 . repeat_region 198262 198414 . + . description=(TTATA)n scaffold_17 . repeat_region 198275 198374 . ? . description=trf scaffold_17 . exon 189678 190229 . + . ID=Physo131714.2;Parent=Physo131714;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . exon 190362 190404 . + . ID=Physo131714.3;Parent=Physo131714;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . exon 190485 192977 . + . ID=Physo131714.4;Parent=Physo131714;constitutive=1;rank=4 scaffold_17 ensembl protein_coding_gene 194132 194966 . - . ID=Physo131715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170057;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 194132 194966 . - . ID=Physo131715;Parent=Physo131715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 194132 194136 . - 0 ID=Physo131715;Parent=Physo131715;rank=3 scaffold_17 . exon 194132 194136 . - . ID=Physo131715.3;Parent=Physo131715;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 194189 194453 . - 0 ID=Physo131715;Parent=Physo131715;rank=2 scaffold_17 . exon 194189 194453 . - . ID=Physo131715.2;Parent=Physo131715;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 194565 194966 . - 0 ID=Physo131715;Parent=Physo131715;rank=1 scaffold_17 . exon 194565 194966 . - . ID=Physo131715.1;Parent=Physo131715;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 195912 197168 . + . ID=Physo131716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170058;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 195912 197168 . + . ID=Physo131716;Parent=Physo131716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 195912 197168 . + 0 ID=Physo131716;Parent=Physo131716;rank=1 scaffold_17 . exon 195912 197168 . + . ID=Physo131716.1;Parent=Physo131716;constitutive=1;rank=1 scaffold_17 . biological_region 199820 199821 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 202635 204071 . - . ID=Physo131717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170059;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 202635 204071 . - . ID=Physo131717;Parent=Physo131717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 202635 203178 . - 0 ID=Physo131717;Parent=Physo131717;rank=3 scaffold_17 . exon 202635 203178 . - . ID=Physo131717.3;Parent=Physo131717;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 203270 203441 . - 0 ID=Physo131717;Parent=Physo131717;rank=2 scaffold_17 . exon 203270 203441 . - . ID=Physo131717.2;Parent=Physo131717;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_17 . CDS 203658 204069 . - 0 ID=Physo131717;Parent=Physo131717;rank=1 scaffold_17 . exon 203658 204071 . - . ID=Physo131717.1;Parent=Physo131717;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 207049 207584 . - . ID=Physo131718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170060;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 207049 207584 . - . ID=Physo131718;Parent=Physo131718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 207049 207460 . - 0 ID=Physo131718;Parent=Physo131718;rank=2 scaffold_17 . exon 207049 207460 . - . ID=Physo131718.2;Parent=Physo131718;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 207508 207584 . - 0 ID=Physo131718;Parent=Physo131718;rank=1 scaffold_17 . exon 207508 207584 . - . ID=Physo131718.1;Parent=Physo131718;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . repeat_region 209960 209967 . ? . description=dust scaffold_17 . repeat_region 211295 211302 . ? . description=dust scaffold_17 . repeat_region 213032 213081 . ? . description=dust scaffold_17 . repeat_region 214036 214043 . ? . description=dust scaffold_17 . repeat_region 215371 215378 . ? . description=dust scaffold_17 . repeat_region 218026 221196 . ? . description=dust scaffold_17 . repeat_region 221203 221463 . - . description=GypsyPi-1c_I-int scaffold_17 . biological_region 222023 222024 0.999 + . logic_name=eponine scaffold_17 . biological_region 222049 222052 0.999 - . logic_name=eponine scaffold_17 . biological_region 222069 222071 0.999 - . logic_name=eponine scaffold_17 . repeat_region 224615 224665 . ? . description=trf scaffold_17 . biological_region 228131 228138 0.999 + . logic_name=eponine scaffold_17 . biological_region 228179 228184 0.999 - . logic_name=eponine scaffold_17 . repeat_region 230534 230547 . ? . description=dust scaffold_17 . repeat_region 233006 233124 . - . description=Gypsy-1-LTR_PI scaffold_17 . repeat_region 233200 234450 . - . description=Gypsy-2-I_PI-int scaffold_17 . repeat_region 234451 234500 . ? . description=dust scaffold_17 . repeat_region 234501 239104 . - . description=Gypsy-2-I_PI-int scaffold_17 . repeat_region 239106 239514 . - . description=Gypsy-1-I_PI-int scaffold_17 ensembl protein_coding_gene 233448 234444 . + . ID=Physo131719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170061;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 233448 234444 . + . ID=Physo131719;Parent=Physo131719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 233448 234388 . + 0 ID=Physo131719;Parent=Physo131719;rank=1 scaffold_17 . exon 233448 234388 . + . ID=Physo131719.1;Parent=Physo131719;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 234420 234444 . + 0 ID=Physo131719;Parent=Physo131719;rank=2 scaffold_17 . exon 234420 234444 . + . ID=Physo131719.2;Parent=Physo131719;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 ensembl protein_coding_gene 234612 239173 . - . ID=Physo131720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170062;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 234612 239173 . - . ID=Physo131720;Parent=Physo131720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 234612 237613 . - 0 ID=Physo131720;Parent=Physo131720;rank=4 scaffold_17 . exon 234612 237613 . - . ID=Physo131720.4;Parent=Physo131720;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 237644 238162 . - 0 ID=Physo131720;Parent=Physo131720;rank=3 scaffold_17 . exon 237644 238162 . - . ID=Physo131720.3;Parent=Physo131720;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 238307 238537 . - 0 ID=Physo131720;Parent=Physo131720;rank=2 scaffold_17 . exon 238307 238537 . - . ID=Physo131720.2;Parent=Physo131720;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 238666 239173 . - 0 ID=Physo131720;Parent=Physo131720;rank=1 scaffold_17 . exon 238666 239173 . - . ID=Physo131720.1;Parent=Physo131720;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . biological_region 244248 244253 0.999 + . logic_name=eponine scaffold_17 . repeat_region 244322 244353 . ? . description=trf scaffold_17 . repeat_region 245835 245866 . ? . description=trf scaffold_17 . biological_region 245936 245941 0.999 - . logic_name=eponine scaffold_17 . biological_region 248141 248144 0.999 - . logic_name=eponine scaffold_17 . biological_region 248517 248523 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 240581 242896 . - . ID=Physo131721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170063;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 240581 242896 . - . ID=Physo131721;Parent=Physo131721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 240581 241059 . - 0 ID=Physo131721;Parent=Physo131721;rank=3 scaffold_17 . exon 240581 241059 . - . ID=Physo131721.3;Parent=Physo131721;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 241104 241568 . - 0 ID=Physo131721;Parent=Physo131721;rank=2 scaffold_17 . exon 241104 241568 . - . ID=Physo131721.2;Parent=Physo131721;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 241990 242896 . - 0 ID=Physo131721;Parent=Physo131721;rank=1 scaffold_17 . exon 241990 242896 . - . ID=Physo131721.1;Parent=Physo131721;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 243123 244464 . + . ID=Physo131722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170064;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 243123 244464 . + . ID=Physo131722;Parent=Physo131722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 243123 243826 . + 0 ID=Physo131722;Parent=Physo131722;rank=1 scaffold_17 . exon 243123 243826 . + . ID=Physo131722.1;Parent=Physo131722;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 243957 244029 . + 0 ID=Physo131722;Parent=Physo131722;rank=2 scaffold_17 . exon 243957 244029 . + . ID=Physo131722.2;Parent=Physo131722;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 244129 244464 . + 0 ID=Physo131722;Parent=Physo131722;rank=3 scaffold_17 . exon 244129 244464 . + . ID=Physo131722.3;Parent=Physo131722;constitutive=1;rank=3 scaffold_17 ensembl protein_coding_gene 245724 247190 . - . ID=Physo131723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170065;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 245724 247190 . - . ID=Physo131723;Parent=Physo131723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 245724 246059 . - 0 ID=Physo131723;Parent=Physo131723;rank=3 scaffold_17 . exon 245724 246059 . - . ID=Physo131723.3;Parent=Physo131723;constitutive=1;rank=3 scaffold_17 . CDS 246159 246231 . - 0 ID=Physo131723;Parent=Physo131723;rank=2 scaffold_17 . exon 246159 246231 . - . ID=Physo131723.2;Parent=Physo131723;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 246362 247158 . - 0 ID=Physo131723;Parent=Physo131723;rank=1 scaffold_17 . exon 246362 247190 . - . ID=Physo131723.1;Parent=Physo131723;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 248435 249915 . + . ID=Physo131724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170066;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 248435 249915 . + . ID=Physo131724;Parent=Physo131724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 248435 248929 . + . ID=Physo131724.1;Parent=Physo131724;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 . exon 248959 249915 . + . ID=Physo131724.2;Parent=Physo131724;constitutive=1;ensembl_phase=-1;rank=2 scaffold_17 . CDS 249301 249915 . + 0 ID=Physo131724;Parent=Physo131724;rank=1 scaffold_17 . repeat_region 256995 257004 . ? . description=dust scaffold_17 ensembl protein_coding_gene 249963 251538 . - . ID=Physo131725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170067;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 249963 251538 . - . ID=Physo131725;Parent=Physo131725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 249963 250684 . - 0 ID=Physo131725;Parent=Physo131725;rank=3 scaffold_17 . exon 249963 250684 . - . ID=Physo131725.3;Parent=Physo131725;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 250751 250864 . - 0 ID=Physo131725;Parent=Physo131725;rank=2 scaffold_17 . exon 250751 250864 . - . ID=Physo131725.2;Parent=Physo131725;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 250932 251538 . - 0 ID=Physo131725;Parent=Physo131725;rank=1 scaffold_17 . exon 250932 251538 . - . ID=Physo131725.1;Parent=Physo131725;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 254978 256445 . - . ID=Physo131726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170068;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 254978 256445 . - . ID=Physo131726;Parent=Physo131726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 254978 255012 . - 0 ID=Physo131726;Parent=Physo131726;rank=3 scaffold_17 . exon 254978 255012 . - . ID=Physo131726.3;Parent=Physo131726;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 255201 256300 . - 0 ID=Physo131726;Parent=Physo131726;rank=2 scaffold_17 . exon 255201 256300 . - . ID=Physo131726.2;Parent=Physo131726;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 256357 256445 . - 0 ID=Physo131726;Parent=Physo131726;rank=1 scaffold_17 . exon 256357 256445 . - . ID=Physo131726.1;Parent=Physo131726;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 257344 260094 . + . ID=Physo131727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170069;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 257344 260094 . + . ID=Physo131727;Parent=Physo131727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 257344 260094 . + 0 ID=Physo131727;Parent=Physo131727;rank=1 scaffold_17 . exon 257344 260094 . + . ID=Physo131727.1;Parent=Physo131727;constitutive=1;rank=1 scaffold_17 . repeat_region 260898 260924 . ? . description=trf scaffold_17 . biological_region 261413 261416 0.999 + . logic_name=eponine scaffold_17 . biological_region 261475 261478 0.999 - . logic_name=eponine scaffold_17 . biological_region 261529 261533 0.999 + . logic_name=eponine scaffold_17 . repeat_region 265853 265991 . ? . description=trf scaffold_17 . repeat_region 267036 267055 . ? . description=trf scaffold_17 ensembl protein_coding_gene 260177 261703 . - . ID=Physo131728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170070;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 260177 261703 . - . ID=Physo131728;Parent=Physo131728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 260177 260185 . - 0 ID=Physo131728;Parent=Physo131728;rank=4 scaffold_17 . exon 260177 260185 . - . ID=Physo131728.4;Parent=Physo131728;constitutive=1;rank=4 scaffold_17 . CDS 260291 260313 . - 0 ID=Physo131728;Parent=Physo131728;rank=3 scaffold_17 . exon 260291 260313 . - . ID=Physo131728.3;Parent=Physo131728;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 260423 261245 . - 0 ID=Physo131728;Parent=Physo131728;rank=2 scaffold_17 . exon 260423 261245 . - . ID=Physo131728.2;Parent=Physo131728;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 261338 261703 . - 0 ID=Physo131728;Parent=Physo131728;rank=1 scaffold_17 . exon 261338 261703 . - . ID=Physo131728.1;Parent=Physo131728;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 262395 264970 . + . ID=Physo131729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170071;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 262395 264970 . + . ID=Physo131729;Parent=Physo131729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 262395 262592 . + 0 ID=Physo131729;Parent=Physo131729;rank=1 scaffold_17 . exon 262395 262592 . + . ID=Physo131729.1;Parent=Physo131729;constitutive=1;rank=1 scaffold_17 . CDS 262657 263152 . + 0 ID=Physo131729;Parent=Physo131729;rank=2 scaffold_17 . exon 262657 263152 . + . ID=Physo131729.2;Parent=Physo131729;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 263220 263362 . + 0 ID=Physo131729;Parent=Physo131729;rank=3 scaffold_17 . exon 263220 263362 . + . ID=Physo131729.3;Parent=Physo131729;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 263750 263778 . + 0 ID=Physo131729;Parent=Physo131729;rank=4 scaffold_17 . exon 263750 263778 . + . ID=Physo131729.4;Parent=Physo131729;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_17 . CDS 263848 264970 . + 0 ID=Physo131729;Parent=Physo131729;rank=5 scaffold_17 . exon 263848 264970 . + . ID=Physo131729.5;Parent=Physo131729;constitutive=1;ensembl_phase=2;rank=5 scaffold_17 ensembl protein_coding_gene 265074 270077 . - . ID=Physo156351;biotype=protein_coding;external_name=C_scaffold_17000020;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 265074 270077 . - . ID=Physo156351;Parent=Physo156351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 265074 265427 . - 0 ID=Physo156351;Parent=Physo156351;rank=6 scaffold_17 . exon 265074 265427 . - . ID=Physo156351.6;Parent=Physo156351;constitutive=1;rank=6 scaffold_17 . CDS 265505 265594 . - 0 ID=Physo156351;Parent=Physo156351;rank=5 scaffold_17 . exon 265505 265594 . - . ID=Physo156351.5;Parent=Physo156351;constitutive=1;rank=5 scaffold_17 . CDS 265662 265717 . - 0 ID=Physo156351;Parent=Physo156351;rank=4 scaffold_17 . exon 265662 265717 . - . ID=Physo156351.4;Parent=Physo156351;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 265739 266783 . - 0 ID=Physo156351;Parent=Physo156351;rank=3 scaffold_17 . exon 265739 266783 . - . ID=Physo156351.3;Parent=Physo156351;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_17 . CDS 266823 269381 . - 0 ID=Physo156351;Parent=Physo156351;rank=2 scaffold_17 . exon 266823 269381 . - . ID=Physo156351.2;Parent=Physo156351;constitutive=1;rank=2 scaffold_17 . CDS 269598 270077 . - 0 ID=Physo156351;Parent=Physo156351;rank=1 scaffold_17 . repeat_region 271106 271232 . ? . description=dust scaffold_17 . repeat_region 275827 275834 . ? . description=dust scaffold_17 ensembl protein_coding_gene 272946 274778 . - . ID=Physo131733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170075;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 272946 274778 . - . ID=Physo131733;Parent=Physo131733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 272946 274778 . - 0 ID=Physo131733;Parent=Physo131733;rank=1 scaffold_17 . exon 272946 274778 . - . ID=Physo131733.1;Parent=Physo131733;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 275155 276575 . - . ID=Physo131734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170076;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 275155 276575 . - . ID=Physo131734;Parent=Physo131734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 275155 275352 . - . ID=Physo131734.8;Parent=Physo131734;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_17 . CDS 275239 275352 . - 0 ID=Physo131734;Parent=Physo131734;rank=8 scaffold_17 . CDS 275437 275526 . - 0 ID=Physo131734;Parent=Physo131734;rank=7 scaffold_17 . exon 275437 275526 . - . ID=Physo131734.7;Parent=Physo131734;constitutive=1;rank=7 scaffold_17 . CDS 275598 275654 . - 0 ID=Physo131734;Parent=Physo131734;rank=6 scaffold_17 . exon 275598 275654 . - . ID=Physo131734.6;Parent=Physo131734;constitutive=1;rank=6 scaffold_17 . CDS 275735 275822 . - 0 ID=Physo131734;Parent=Physo131734;rank=5 scaffold_17 . exon 275735 275822 . - . ID=Physo131734.5;Parent=Physo131734;constitutive=1;ensembl_phase=2;rank=5 scaffold_17 . CDS 275897 276123 . - 0 ID=Physo131734;Parent=Physo131734;rank=4 scaffold_17 . exon 275897 276123 . - . ID=Physo131734.4;Parent=Physo131734;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_17 . CDS 276207 276268 . - 0 ID=Physo131734;Parent=Physo131734;rank=3 scaffold_17 . exon 276207 276268 . - . ID=Physo131734.3;Parent=Physo131734;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 276344 276377 . - 0 ID=Physo131734;Parent=Physo131734;rank=2 scaffold_17 . exon 276344 276377 . - . ID=Physo131734.2;Parent=Physo131734;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 276492 276569 . - 0 ID=Physo131734;Parent=Physo131734;rank=1 scaffold_17 . exon 276492 276575 . - . ID=Physo131734.1;Parent=Physo131734;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 276790 277675 . + . ID=Physo131735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170077;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 276790 277675 . + . ID=Physo131735;Parent=Physo131735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 276790 277453 . + 0 ID=Physo131735;Parent=Physo131735;rank=1 scaffold_17 . exon 276790 277453 . + . ID=Physo131735.1;Parent=Physo131735;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 277533 277675 . + 0 ID=Physo131735;Parent=Physo131735;rank=2 scaffold_17 . exon 277533 277675 . + . ID=Physo131735.2;Parent=Physo131735;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 ensembl protein_coding_gene 278687 279169 . + . ID=Physo131736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170078;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 278687 279169 . + . ID=Physo131736;Parent=Physo131736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 278687 279169 . + 0 ID=Physo131736;Parent=Physo131736;rank=1 scaffold_17 . exon 278687 279169 . + . ID=Physo131736.1;Parent=Physo131736;constitutive=1;rank=1 scaffold_17 . exon 269598 270077 . - . ID=Physo156351.1;Parent=Physo156351;constitutive=1;rank=1 scaffold_17 . biological_region 285163 285167 0.999 - . logic_name=eponine scaffold_17 . biological_region 285555 285557 0.999 - . logic_name=eponine scaffold_17 . biological_region 285612 285613 0.999 + . logic_name=eponine scaffold_17 . biological_region 287538 287540 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 279501 280004 . + . ID=Physo131737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170079;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 279501 280004 . + . ID=Physo131737;Parent=Physo131737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 279501 280004 . + 0 ID=Physo131737;Parent=Physo131737;rank=1 scaffold_17 . exon 279501 280004 . + . ID=Physo131737.1;Parent=Physo131737;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 280538 281443 . + . ID=Physo131738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170080;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 280538 281443 . + . ID=Physo131738;Parent=Physo131738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 280538 281443 . + 0 ID=Physo131738;Parent=Physo131738;rank=1 scaffold_17 . exon 280538 281443 . + . ID=Physo131738.1;Parent=Physo131738;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 282110 282766 . + . ID=Physo131739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170081;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 282110 282766 . + . ID=Physo131739;Parent=Physo131739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 282110 282766 . + 0 ID=Physo131739;Parent=Physo131739;rank=1 scaffold_17 . exon 282110 282766 . + . ID=Physo131739.1;Parent=Physo131739;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 287030 291460 . + . ID=Physo131741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170083;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 287030 291460 . + . ID=Physo131741;Parent=Physo131741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 287030 291460 . + 0 ID=Physo131741;Parent=Physo131741;rank=1 scaffold_17 . exon 287030 291460 . + . ID=Physo131741.1;Parent=Physo131741;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 282890 283551 . - . ID=Physo156352;biotype=protein_coding;external_name=C_scaffold_17000021;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 282890 283551 . - . ID=Physo156352;Parent=Physo156352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 282890 282893 . - 0 ID=Physo156352;Parent=Physo156352;rank=4 scaffold_17 . exon 282890 282893 . - . ID=Physo156352.4;Parent=Physo156352;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 282998 283093 . - 0 ID=Physo156352;Parent=Physo156352;rank=3 scaffold_17 . exon 282998 283093 . - . ID=Physo156352.3;Parent=Physo156352;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_17 . CDS 283163 283330 . - 0 ID=Physo156352;Parent=Physo156352;rank=2 scaffold_17 . exon 283163 283330 . - . ID=Physo156352.2;Parent=Physo156352;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 283397 283551 . - 0 ID=Physo156352;Parent=Physo156352;rank=1 scaffold_17 . exon 283397 283551 . - . ID=Physo156352.1;Parent=Physo156352;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 284231 286743 . - . ID=Physo156353;biotype=protein_coding;external_name=C_scaffold_17000022;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 284231 286743 . - . ID=Physo156353;Parent=Physo156353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 284231 284602 . - 0 ID=Physo156353;Parent=Physo156353;rank=5 scaffold_17 . exon 284231 284602 . - . ID=Physo156353.5;Parent=Physo156353;constitutive=1;rank=5 scaffold_17 . CDS 284682 284751 . - 0 ID=Physo156353;Parent=Physo156353;rank=4 scaffold_17 . exon 284682 284751 . - . ID=Physo156353.4;Parent=Physo156353;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 284846 285663 . - 0 ID=Physo156353;Parent=Physo156353;rank=3 scaffold_17 . exon 284846 285663 . - . ID=Physo156353.3;Parent=Physo156353;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 285934 286052 . - 0 ID=Physo156353;Parent=Physo156353;rank=2 scaffold_17 . exon 285934 286052 . - . ID=Physo156353.2;Parent=Physo156353;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 286326 286743 . - 0 ID=Physo156353;Parent=Physo156353;rank=1 scaffold_17 . exon 286326 286743 . - . ID=Physo156353.1;Parent=Physo156353;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . repeat_region 291697 291873 . ? . description=trf scaffold_17 . repeat_region 294069 294112 . ? . description=trf scaffold_17 . repeat_region 295141 295188 . + . description=(CATTG)n scaffold_17 . repeat_region 295142 295188 . ? . description=trf scaffold_17 . repeat_region 295719 295731 . ? . description=dust scaffold_17 ensembl protein_coding_gene 291649 292680 . - . ID=Physo131742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170084;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 291649 292680 . - . ID=Physo131742;Parent=Physo131742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 291649 292680 . - 0 ID=Physo131742;Parent=Physo131742;rank=1 scaffold_17 . exon 291649 292680 . - . ID=Physo131742.1;Parent=Physo131742;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 295922 297934 . + . ID=Physo131743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170085;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 295922 297934 . + . ID=Physo131743;Parent=Physo131743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 295922 296335 . + 0 ID=Physo131743;Parent=Physo131743;rank=1 scaffold_17 . exon 295922 296335 . + . ID=Physo131743.1;Parent=Physo131743;constitutive=1;rank=1 scaffold_17 . CDS 296777 297077 . + 0 ID=Physo131743;Parent=Physo131743;rank=2 scaffold_17 . exon 296777 297077 . + . ID=Physo131743.2;Parent=Physo131743;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 297116 297859 . + 0 ID=Physo131743;Parent=Physo131743;rank=3 scaffold_17 . exon 297116 297859 . + . ID=Physo131743.3;Parent=Physo131743;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 297924 297934 . + 0 ID=Physo131743;Parent=Physo131743;rank=4 scaffold_17 . exon 297924 297934 . + . ID=Physo131743.4;Parent=Physo131743;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 . repeat_region 303093 303140 . + . description=(CAATG)n scaffold_17 . biological_region 303147 303149 0.999 + . logic_name=eponine scaffold_17 . biological_region 303244 303246 0.999 - . logic_name=eponine scaffold_17 . biological_region 303404 303408 0.999 + . logic_name=eponine scaffold_17 . biological_region 303753 303760 0.999 - . logic_name=eponine scaffold_17 . biological_region 304290 304295 0.999 - . logic_name=eponine scaffold_17 . biological_region 304381 304386 0.999 - . logic_name=eponine scaffold_17 . biological_region 304492 304493 0.999 - . logic_name=eponine scaffold_17 . biological_region 304882 304889 0.999 + . logic_name=eponine scaffold_17 . biological_region 305394 305394 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 299419 299595 . + . ID=Physo113879;biotype=protein_coding;external_name=estExt_Genewise1.C_170004;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 299419 299595 . + . ID=Physo113879;Parent=Physo113879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 299419 299595 . + . ID=Physo113879.1;Parent=Physo113879;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 299461 299595 . + 0 ID=Physo113879;Parent=Physo113879;rank=1 scaffold_17 ensembl protein_coding_gene 301028 301729 . - . ID=Physo131744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170086;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 301028 301729 . - . ID=Physo131744;Parent=Physo131744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 301028 301729 . - 0 ID=Physo131744;Parent=Physo131744;rank=1 scaffold_17 . exon 301028 301729 . - . ID=Physo131744.1;Parent=Physo131744;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 307771 310000 . - . ID=Physo131746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170088;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 307771 310000 . - . ID=Physo131746;Parent=Physo131746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 307771 309457 . - 0 ID=Physo131746;Parent=Physo131746;rank=4 scaffold_17 . exon 307771 309457 . - . ID=Physo131746.4;Parent=Physo131746;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 309524 309707 . - 0 ID=Physo131746;Parent=Physo131746;rank=3 scaffold_17 . CDS 309787 309881 . - 0 ID=Physo131746;Parent=Physo131746;rank=2 scaffold_17 . CDS 309945 310000 . - 0 ID=Physo131746;Parent=Physo131746;rank=1 scaffold_17 ensembl protein_coding_gene 305310 307629 . + . ID=Physo156355;biotype=protein_coding;external_name=C_scaffold_17000024;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 305310 307629 . + . ID=Physo156355;Parent=Physo156355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 305310 305575 . + 0 ID=Physo156355;Parent=Physo156355;rank=1 scaffold_17 . exon 305310 305575 . + . ID=Physo156355.1;Parent=Physo156355;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 305597 305930 . + 0 ID=Physo156355;Parent=Physo156355;rank=2 scaffold_17 . exon 305597 305930 . + . ID=Physo156355.2;Parent=Physo156355;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 306088 306752 . + 0 ID=Physo156355;Parent=Physo156355;rank=3 scaffold_17 . exon 306088 306752 . + . ID=Physo156355.3;Parent=Physo156355;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 306789 307235 . + 0 ID=Physo156355;Parent=Physo156355;rank=4 scaffold_17 . exon 306789 307235 . + . ID=Physo156355.4;Parent=Physo156355;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_17 . CDS 307299 307482 . + 0 ID=Physo156355;Parent=Physo156355;rank=5 scaffold_17 . exon 307299 307482 . + . ID=Physo156355.5;Parent=Physo156355;constitutive=1;ensembl_phase=2;rank=5 scaffold_17 . CDS 307549 307629 . + 0 ID=Physo156355;Parent=Physo156355;rank=6 scaffold_17 . exon 307549 307629 . + . ID=Physo156355.6;Parent=Physo156355;constitutive=1;rank=6 scaffold_17 . repeat_region 310207 310214 . ? . description=dust scaffold_17 . repeat_region 313748 313774 . ? . description=dust scaffold_17 . repeat_region 313748 313774 . ? . description=trf scaffold_17 . repeat_region 314549 314592 . ? . description=trf scaffold_17 . repeat_region 317237 317299 . ? . description=trf scaffold_17 . repeat_region 317680 317687 . ? . description=dust scaffold_17 . repeat_region 318012 318050 . ? . description=trf scaffold_17 . repeat_region 318766 318831 . ? . description=trf scaffold_17 . exon 309524 309707 . - . ID=Physo131746.3;Parent=Physo131746;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_17 . exon 309787 309881 . - . ID=Physo131746.2;Parent=Physo131746;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . exon 309945 310000 . - . ID=Physo131746.1;Parent=Physo131746;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 310269 313600 . - . ID=Physo131747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170089;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 310269 313600 . - . ID=Physo131747;Parent=Physo131747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 310269 310846 . - 0 ID=Physo131747;Parent=Physo131747;rank=3 scaffold_17 . exon 310269 310846 . - . ID=Physo131747.3;Parent=Physo131747;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 311288 312658 . - 0 ID=Physo131747;Parent=Physo131747;rank=2 scaffold_17 . exon 311288 312658 . - . ID=Physo131747.2;Parent=Physo131747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 312739 313600 . - 0 ID=Physo131747;Parent=Physo131747;rank=1 scaffold_17 . exon 312739 313600 . - . ID=Physo131747.1;Parent=Physo131747;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 313819 316000 . + . ID=Physo131748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170090;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 313819 316000 . + . ID=Physo131748;Parent=Physo131748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 313819 314516 . + 0 ID=Physo131748;Parent=Physo131748;rank=1 scaffold_17 . exon 313819 314516 . + . ID=Physo131748.1;Parent=Physo131748;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 314629 314845 . + 0 ID=Physo131748;Parent=Physo131748;rank=2 scaffold_17 . exon 314629 314845 . + . ID=Physo131748.2;Parent=Physo131748;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 314921 315040 . + 0 ID=Physo131748;Parent=Physo131748;rank=3 scaffold_17 . exon 314921 315040 . + . ID=Physo131748.3;Parent=Physo131748;constitutive=1;rank=3 scaffold_17 . CDS 315138 315177 . + 0 ID=Physo131748;Parent=Physo131748;rank=4 scaffold_17 . exon 315138 315177 . + . ID=Physo131748.4;Parent=Physo131748;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_17 . CDS 315311 315483 . + 0 ID=Physo131748;Parent=Physo131748;rank=5 scaffold_17 . exon 315311 315483 . + . ID=Physo131748.5;Parent=Physo131748;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 315605 315675 . + 0 ID=Physo131748;Parent=Physo131748;rank=6 scaffold_17 . exon 315605 315675 . + . ID=Physo131748.6;Parent=Physo131748;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_17 . CDS 315748 316000 . + 0 ID=Physo131748;Parent=Physo131748;rank=7 scaffold_17 . exon 315748 316000 . + . ID=Physo131748.7;Parent=Physo131748;constitutive=1;ensembl_phase=2;rank=7 scaffold_17 ensembl protein_coding_gene 316803 317471 . + . ID=Physo131749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170091;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 316803 317471 . + . ID=Physo131749;Parent=Physo131749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 316803 317471 . + 0 ID=Physo131749;Parent=Physo131749;rank=1 scaffold_17 . exon 316803 317471 . + . ID=Physo131749.1;Parent=Physo131749;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 318602 319270 . - . ID=Physo131750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170092;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 318602 319270 . - . ID=Physo131750;Parent=Physo131750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 318602 319270 . - 0 ID=Physo131750;Parent=Physo131750;rank=1 scaffold_17 . exon 318602 319270 . - . ID=Physo131750.1;Parent=Physo131750;constitutive=1;rank=1 scaffold_17 . biological_region 318958 318959 0.999 + . logic_name=eponine scaffold_17 . biological_region 320676 320677 0.999 - . logic_name=eponine scaffold_17 . biological_region 321111 321113 0.999 + . logic_name=eponine scaffold_17 . biological_region 321533 321535 0.999 + . logic_name=eponine scaffold_17 . biological_region 322568 322570 0.999 + . logic_name=eponine scaffold_17 . biological_region 322771 322771 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 320572 323670 . + . ID=Physo131751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170093;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 320572 323670 . + . ID=Physo131751;Parent=Physo131751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 320572 321157 . + 0 ID=Physo131751;Parent=Physo131751;rank=1 scaffold_17 . exon 320572 321157 . + . ID=Physo131751.1;Parent=Physo131751;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 321290 321822 . + 0 ID=Physo131751;Parent=Physo131751;rank=2 scaffold_17 . exon 321290 321822 . + . ID=Physo131751.2;Parent=Physo131751;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 322066 322144 . + 0 ID=Physo131751;Parent=Physo131751;rank=3 scaffold_17 . exon 322066 322144 . + . ID=Physo131751.3;Parent=Physo131751;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_17 . CDS 322263 322310 . + 0 ID=Physo131751;Parent=Physo131751;rank=4 scaffold_17 . exon 322263 322310 . + . ID=Physo131751.4;Parent=Physo131751;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 322424 323670 . + 0 ID=Physo131751;Parent=Physo131751;rank=5 scaffold_17 . exon 322424 323670 . + . ID=Physo131751.5;Parent=Physo131751;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 ensembl protein_coding_gene 323922 325245 . - . ID=Physo131752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170094;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 323922 325245 . - . ID=Physo131752;Parent=Physo131752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 323922 324131 . - 0 ID=Physo131752;Parent=Physo131752;rank=4 scaffold_17 . exon 323922 324131 . - . ID=Physo131752.4;Parent=Physo131752;constitutive=1;rank=4 scaffold_17 . CDS 324279 324374 . - 0 ID=Physo131752;Parent=Physo131752;rank=3 scaffold_17 . exon 324279 324374 . - . ID=Physo131752.3;Parent=Physo131752;constitutive=1;rank=3 scaffold_17 . CDS 324575 324899 . - 0 ID=Physo131752;Parent=Physo131752;rank=2 scaffold_17 . exon 324575 324899 . - . ID=Physo131752.2;Parent=Physo131752;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 325091 325245 . - 0 ID=Physo131752;Parent=Physo131752;rank=1 scaffold_17 . exon 325091 325245 . - . ID=Physo131752.1;Parent=Physo131752;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 327542 329003 . + . ID=Physo131753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170095;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 327542 329003 . + . ID=Physo131753;Parent=Physo131753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 327542 327937 . + 0 ID=Physo131753;Parent=Physo131753;rank=1 scaffold_17 . exon 327542 327937 . + . ID=Physo131753.1;Parent=Physo131753;constitutive=1;rank=1 scaffold_17 . CDS 328009 328259 . + 0 ID=Physo131753;Parent=Physo131753;rank=2 scaffold_17 . exon 328009 328259 . + . ID=Physo131753.2;Parent=Physo131753;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 328378 328602 . + 0 ID=Physo131753;Parent=Physo131753;rank=3 scaffold_17 . exon 328378 328602 . + . ID=Physo131753.3;Parent=Physo131753;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_17 . CDS 328631 329003 . + 0 ID=Physo131753;Parent=Physo131753;rank=4 scaffold_17 . exon 328631 329003 . + . ID=Physo131753.4;Parent=Physo131753;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . repeat_region 328876 328901 . ? . description=trf scaffold_17 . repeat_region 328901 328953 . ? . description=trf scaffold_17 . repeat_region 328925 328990 . ? . description=trf scaffold_17 . repeat_region 330793 330801 . ? . description=dust scaffold_17 . repeat_region 331369 331571 . ? . description=trf scaffold_17 . repeat_region 331522 331572 . ? . description=trf scaffold_17 . repeat_region 331732 331854 . ? . description=trf scaffold_17 . repeat_region 331763 331818 . ? . description=trf scaffold_17 . repeat_region 331790 331902 . ? . description=trf scaffold_17 . repeat_region 332329 332343 . ? . description=dust scaffold_17 . repeat_region 333464 333518 . ? . description=trf scaffold_17 . repeat_region 333464 333621 . ? . description=trf scaffold_17 . repeat_region 333554 333685 . ? . description=trf scaffold_17 . repeat_region 333752 333884 . ? . description=trf scaffold_17 . repeat_region 336665 336689 . ? . description=trf scaffold_17 . repeat_region 336967 337006 . ? . description=trf scaffold_17 . repeat_region 338025 338034 . ? . description=dust scaffold_17 ensembl protein_coding_gene 331353 331847 . + . ID=Physo131754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170096;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 331353 331847 . + . ID=Physo131754;Parent=Physo131754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 331353 331582 . + 0 ID=Physo131754;Parent=Physo131754;rank=1 scaffold_17 . exon 331353 331582 . + . ID=Physo131754.1;Parent=Physo131754;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 331682 331847 . + 0 ID=Physo131754;Parent=Physo131754;rank=2 scaffold_17 . exon 331682 331847 . + . ID=Physo131754.2;Parent=Physo131754;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 ensembl protein_coding_gene 332960 334122 . + . ID=Physo131755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170097;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 332960 334122 . + . ID=Physo131755;Parent=Physo131755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 332960 333277 . + 0 ID=Physo131755;Parent=Physo131755;rank=1 scaffold_17 . exon 332960 333277 . + . ID=Physo131755.1;Parent=Physo131755;constitutive=1;rank=1 scaffold_17 . CDS 333499 333585 . + 0 ID=Physo131755;Parent=Physo131755;rank=2 scaffold_17 . exon 333499 333585 . + . ID=Physo131755.2;Parent=Physo131755;constitutive=1;rank=2 scaffold_17 . CDS 333679 334122 . + 0 ID=Physo131755;Parent=Physo131755;rank=3 scaffold_17 . exon 333679 334122 . + . ID=Physo131755.3;Parent=Physo131755;constitutive=1;rank=3 scaffold_17 ensembl protein_coding_gene 336169 337321 . + . ID=Physo156359;biotype=protein_coding;external_name=C_scaffold_17000028;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 336169 337321 . + . ID=Physo156359;Parent=Physo156359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 336169 336232 . + 0 ID=Physo156359;Parent=Physo156359;rank=1 scaffold_17 . exon 336169 336232 . + . ID=Physo156359.1;Parent=Physo156359;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 336324 336800 . + 0 ID=Physo156359;Parent=Physo156359;rank=2 scaffold_17 . exon 336324 336800 . + . ID=Physo156359.2;Parent=Physo156359;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 336870 337321 . + 0 ID=Physo156359;Parent=Physo156359;rank=3 scaffold_17 . exon 336870 337321 . + . ID=Physo156359.3;Parent=Physo156359;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 338091 343476 . - . ID=Physo156360;biotype=protein_coding;external_name=C_scaffold_17000029;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 338091 343476 . - . ID=Physo156360;Parent=Physo156360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 338091 339194 . - 0 ID=Physo156360;Parent=Physo156360;rank=15 scaffold_17 . exon 338091 339194 . - . ID=Physo156360.15;Parent=Physo156360;constitutive=1;rank=15 scaffold_17 . CDS 339542 339638 . - 0 ID=Physo156360;Parent=Physo156360;rank=14 scaffold_17 . CDS 339709 339858 . - 0 ID=Physo156360;Parent=Physo156360;rank=13 scaffold_17 . CDS 339926 340002 . - 0 ID=Physo156360;Parent=Physo156360;rank=12 scaffold_17 . CDS 340073 340159 . - 0 ID=Physo156360;Parent=Physo156360;rank=11 scaffold_17 . CDS 340232 340442 . - 0 ID=Physo156360;Parent=Physo156360;rank=10 scaffold_17 . CDS 340536 340645 . - 0 ID=Physo156360;Parent=Physo156360;rank=9 scaffold_17 . CDS 340723 340906 . - 0 ID=Physo156360;Parent=Physo156360;rank=8 scaffold_17 . CDS 340996 341196 . - 0 ID=Physo156360;Parent=Physo156360;rank=7 scaffold_17 . CDS 341290 341755 . - 0 ID=Physo156360;Parent=Physo156360;rank=6 scaffold_17 . CDS 341968 342157 . - 0 ID=Physo156360;Parent=Physo156360;rank=5 scaffold_17 . CDS 342227 342497 . - 0 ID=Physo156360;Parent=Physo156360;rank=4 scaffold_17 . CDS 342561 342605 . - 0 ID=Physo156360;Parent=Physo156360;rank=3 scaffold_17 . CDS 342905 342988 . - 0 ID=Physo156360;Parent=Physo156360;rank=2 scaffold_17 . CDS 343451 343476 . - 0 ID=Physo156360;Parent=Physo156360;rank=1 scaffold_17 . biological_region 339703 339703 0.999 + . logic_name=eponine scaffold_17 . biological_region 339805 339808 0.999 - . logic_name=eponine scaffold_17 . biological_region 341688 341692 0.999 - . logic_name=eponine scaffold_17 . biological_region 341720 341722 0.999 + . logic_name=eponine scaffold_17 . biological_region 341740 341744 0.999 - . logic_name=eponine scaffold_17 . biological_region 342374 342376 0.999 - . logic_name=eponine scaffold_17 . biological_region 347986 347993 0.999 - . logic_name=eponine scaffold_17 . exon 339542 339638 . - . ID=Physo156360.14;Parent=Physo156360;constitutive=1;ensembl_phase=2;rank=14 scaffold_17 . exon 339709 339858 . - . ID=Physo156360.13;Parent=Physo156360;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_17 . exon 339926 340002 . - . ID=Physo156360.12;Parent=Physo156360;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_17 . exon 340073 340159 . - . ID=Physo156360.11;Parent=Physo156360;constitutive=1;rank=11 scaffold_17 . exon 340232 340442 . - . ID=Physo156360.10;Parent=Physo156360;constitutive=1;ensembl_phase=2;rank=10 scaffold_17 . exon 340536 340645 . - . ID=Physo156360.9;Parent=Physo156360;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_17 . exon 340723 340906 . - . ID=Physo156360.8;Parent=Physo156360;constitutive=1;ensembl_phase=2;rank=8 scaffold_17 . exon 340996 341196 . - . ID=Physo156360.7;Parent=Physo156360;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_17 . exon 341290 341755 . - . ID=Physo156360.6;Parent=Physo156360;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_17 . exon 341968 342157 . - . ID=Physo156360.5;Parent=Physo156360;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_17 . exon 342227 342497 . - . ID=Physo156360.4;Parent=Physo156360;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . exon 342561 342605 . - . ID=Physo156360.3;Parent=Physo156360;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_17 . exon 342905 342988 . - . ID=Physo156360.2;Parent=Physo156360;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . exon 343451 343476 . - . ID=Physo156360.1;Parent=Physo156360;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 344551 347644 . - . ID=Physo156361;biotype=protein_coding;external_name=C_scaffold_17000030;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 344551 347644 . - . ID=Physo156361;Parent=Physo156361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 344551 344670 . - 0 ID=Physo156361;Parent=Physo156361;rank=10 scaffold_17 . exon 344551 344670 . - . ID=Physo156361.10;Parent=Physo156361;constitutive=1;rank=10 scaffold_17 . CDS 344748 344837 . - 0 ID=Physo156361;Parent=Physo156361;rank=9 scaffold_17 . exon 344748 344837 . - . ID=Physo156361.9;Parent=Physo156361;constitutive=1;rank=9 scaffold_17 . CDS 344924 344947 . - 0 ID=Physo156361;Parent=Physo156361;rank=8 scaffold_17 . exon 344924 344947 . - . ID=Physo156361.8;Parent=Physo156361;constitutive=1;rank=8 scaffold_17 . CDS 345137 345398 . - 0 ID=Physo156361;Parent=Physo156361;rank=7 scaffold_17 . exon 345137 345398 . - . ID=Physo156361.7;Parent=Physo156361;constitutive=1;ensembl_phase=2;rank=7 scaffold_17 . CDS 345467 345561 . - 0 ID=Physo156361;Parent=Physo156361;rank=6 scaffold_17 . exon 345467 345561 . - . ID=Physo156361.6;Parent=Physo156361;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_17 . CDS 345618 345741 . - 0 ID=Physo156361;Parent=Physo156361;rank=5 scaffold_17 . exon 345618 345741 . - . ID=Physo156361.5;Parent=Physo156361;constitutive=1;ensembl_phase=2;rank=5 scaffold_17 . CDS 346387 346859 . - 0 ID=Physo156361;Parent=Physo156361;rank=4 scaffold_17 . exon 346387 346859 . - . ID=Physo156361.4;Parent=Physo156361;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_17 . CDS 346929 347165 . - 0 ID=Physo156361;Parent=Physo156361;rank=3 scaffold_17 . exon 346929 347165 . - . ID=Physo156361.3;Parent=Physo156361;constitutive=1;rank=3 scaffold_17 . CDS 347235 347312 . - 0 ID=Physo156361;Parent=Physo156361;rank=2 scaffold_17 . exon 347235 347312 . - . ID=Physo156361.2;Parent=Physo156361;constitutive=1;rank=2 scaffold_17 . CDS 347378 347644 . - 0 ID=Physo156361;Parent=Physo156361;rank=1 scaffold_17 . exon 347378 347644 . - . ID=Physo156361.1;Parent=Physo156361;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 347856 351055 . + . ID=Physo156364;biotype=protein_coding;external_name=C_scaffold_17000033;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 347856 351055 . + . ID=Physo156364;Parent=Physo156364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 347856 348245 . + 0 ID=Physo156364;Parent=Physo156364;rank=1 scaffold_17 . exon 347856 348245 . + . ID=Physo156364.1;Parent=Physo156364;constitutive=1;rank=1 scaffold_17 . CDS 348308 348414 . + 0 ID=Physo156364;Parent=Physo156364;rank=2 scaffold_17 . exon 348308 348414 . + . ID=Physo156364.2;Parent=Physo156364;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 348488 348706 . + 0 ID=Physo156364;Parent=Physo156364;rank=3 scaffold_17 . exon 348488 348706 . + . ID=Physo156364.3;Parent=Physo156364;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_17 . CDS 348783 349232 . + 0 ID=Physo156364;Parent=Physo156364;rank=4 scaffold_17 . CDS 349254 349498 . + 0 ID=Physo156364;Parent=Physo156364;rank=5 scaffold_17 . CDS 349601 349783 . + 0 ID=Physo156364;Parent=Physo156364;rank=6 scaffold_17 . CDS 349895 350044 . + 0 ID=Physo156364;Parent=Physo156364;rank=7 scaffold_17 . CDS 350120 350355 . + 0 ID=Physo156364;Parent=Physo156364;rank=8 scaffold_17 . CDS 350380 350671 . + 0 ID=Physo156364;Parent=Physo156364;rank=9 scaffold_17 . CDS 350702 350907 . + 0 ID=Physo156364;Parent=Physo156364;rank=10 scaffold_17 . CDS 351020 351055 . + 0 ID=Physo156364;Parent=Physo156364;rank=11 scaffold_17 . repeat_region 355426 355433 . ? . description=dust scaffold_17 . repeat_region 355730 355770 . ? . description=trf scaffold_17 . repeat_region 355819 355843 . ? . description=trf scaffold_17 . repeat_region 358616 358632 . ? . description=dust scaffold_17 ensembl protein_coding_gene 354367 355362 . + . ID=Physo131761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170103;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 354367 355362 . + . ID=Physo131761;Parent=Physo131761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 354367 355362 . + 0 ID=Physo131761;Parent=Physo131761;rank=1 scaffold_17 . exon 354367 355362 . + . ID=Physo131761.1;Parent=Physo131761;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 356328 358229 . - . ID=Physo131762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170104;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 356328 358229 . - . ID=Physo131762;Parent=Physo131762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 356328 358229 . - 0 ID=Physo131762;Parent=Physo131762;rank=1 scaffold_17 . exon 356328 358229 . - . ID=Physo131762.1;Parent=Physo131762;constitutive=1;rank=1 scaffold_17 . exon 348783 349232 . + . ID=Physo156364.4;Parent=Physo156364;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_17 . exon 349254 349498 . + . ID=Physo156364.5;Parent=Physo156364;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_17 . exon 349601 349783 . + . ID=Physo156364.6;Parent=Physo156364;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_17 . exon 349895 350044 . + . ID=Physo156364.7;Parent=Physo156364;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_17 . exon 350120 350355 . + . ID=Physo156364.8;Parent=Physo156364;constitutive=1;ensembl_phase=1;rank=8 scaffold_17 . exon 350380 350671 . + . ID=Physo156364.9;Parent=Physo156364;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_17 . exon 350702 350907 . + . ID=Physo156364.10;Parent=Physo156364;constitutive=1;ensembl_phase=1;rank=10 scaffold_17 . exon 351020 351055 . + . ID=Physo156364.11;Parent=Physo156364;constitutive=1;rank=11 scaffold_17 . biological_region 366662 366665 0.999 - . logic_name=eponine scaffold_17 . repeat_region 373963 373990 . ? . description=dust scaffold_17 ensembl protein_coding_gene 375191 378660 . + . ID=Physo131764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170106;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 375191 378660 . + . ID=Physo131764;Parent=Physo131764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 375191 375879 . + 0 ID=Physo131764;Parent=Physo131764;rank=1 scaffold_17 . exon 375191 375879 . + . ID=Physo131764.1;Parent=Physo131764;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 375959 375962 . + 0 ID=Physo131764;Parent=Physo131764;rank=2 scaffold_17 . exon 375959 375962 . + . ID=Physo131764.2;Parent=Physo131764;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 376222 376344 . + 0 ID=Physo131764;Parent=Physo131764;rank=3 scaffold_17 . exon 376222 376344 . + . ID=Physo131764.3;Parent=Physo131764;constitutive=1;rank=3 scaffold_17 . CDS 376420 376750 . + 0 ID=Physo131764;Parent=Physo131764;rank=4 scaffold_17 . exon 376420 376750 . + . ID=Physo131764.4;Parent=Physo131764;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_17 . CDS 376817 378660 . + 0 ID=Physo131764;Parent=Physo131764;rank=5 scaffold_17 . exon 376817 378660 . + . ID=Physo131764.5;Parent=Physo131764;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 ensembl protein_coding_gene 369738 370862 . - . ID=Physo156365;biotype=protein_coding;external_name=C_scaffold_17000034;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 369738 370862 . - . ID=Physo156365;Parent=Physo156365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 369738 369936 . - 0 ID=Physo156365;Parent=Physo156365;rank=4 scaffold_17 . exon 369738 369936 . - . ID=Physo156365.4;Parent=Physo156365;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 370012 370114 . - 0 ID=Physo156365;Parent=Physo156365;rank=3 scaffold_17 . exon 370012 370114 . - . ID=Physo156365.3;Parent=Physo156365;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_17 . CDS 370192 370393 . - 0 ID=Physo156365;Parent=Physo156365;rank=2 scaffold_17 . exon 370192 370393 . - . ID=Physo156365.2;Parent=Physo156365;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 370707 370862 . - 0 ID=Physo156365;Parent=Physo156365;rank=1 scaffold_17 . exon 370707 370862 . - . ID=Physo156365.1;Parent=Physo156365;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 370984 372294 . + . ID=Physo156366;biotype=protein_coding;external_name=C_scaffold_17000035;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 370984 372294 . + . ID=Physo156366;Parent=Physo156366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 370984 371397 . + 0 ID=Physo156366;Parent=Physo156366;rank=1 scaffold_17 . exon 370984 371397 . + . ID=Physo156366.1;Parent=Physo156366;constitutive=1;rank=1 scaffold_17 . CDS 371674 371802 . + 0 ID=Physo156366;Parent=Physo156366;rank=2 scaffold_17 . exon 371674 371802 . + . ID=Physo156366.2;Parent=Physo156366;constitutive=1;rank=2 scaffold_17 . CDS 371875 372294 . + 0 ID=Physo156366;Parent=Physo156366;rank=3 scaffold_17 . exon 371875 372294 . + . ID=Physo156366.3;Parent=Physo156366;constitutive=1;rank=3 scaffold_17 . repeat_region 384374 384394 . ? . description=trf scaffold_17 . repeat_region 384394 384413 . ? . description=trf scaffold_17 . biological_region 384993 385000 0.999 - . logic_name=eponine scaffold_17 . biological_region 385017 385018 0.999 - . logic_name=eponine scaffold_17 . biological_region 385258 385265 0.999 + . logic_name=eponine scaffold_17 . repeat_region 387083 387151 . + . description=(CTG)n scaffold_17 . repeat_region 387121 387142 . ? . description=trf scaffold_17 . biological_region 387444 387449 0.999 - . logic_name=eponine scaffold_17 . biological_region 387482 387488 0.999 + . logic_name=eponine scaffold_17 . biological_region 387496 387496 0.999 - . logic_name=eponine scaffold_17 . biological_region 387517 387518 0.999 - . logic_name=eponine scaffold_17 . biological_region 387540 387543 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 384762 386946 . + . ID=Physo131765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170107;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 384762 386946 . + . ID=Physo131765;Parent=Physo131765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 384762 386035 . + 0 ID=Physo131765;Parent=Physo131765;rank=1 scaffold_17 . exon 384762 386035 . + . ID=Physo131765.1;Parent=Physo131765;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 386112 386894 . + 0 ID=Physo131765;Parent=Physo131765;rank=2 scaffold_17 . exon 386112 386894 . + . ID=Physo131765.2;Parent=Physo131765;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 386922 386946 . + 0 ID=Physo131765;Parent=Physo131765;rank=3 scaffold_17 . exon 386922 386946 . + . ID=Physo131765.3;Parent=Physo131765;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 ensembl protein_coding_gene 387034 387900 . - . ID=Physo131766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170108;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 387034 387900 . - . ID=Physo131766;Parent=Physo131766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 387034 387900 . - 0 ID=Physo131766;Parent=Physo131766;rank=1 scaffold_17 . exon 387034 387900 . - . ID=Physo131766.1;Parent=Physo131766;constitutive=1;rank=1 scaffold_17 . repeat_region 394145 394206 . ? . description=dust scaffold_17 ensembl protein_coding_gene 394033 396105 . + . ID=Physo131767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170109;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 394033 396105 . + . ID=Physo131767;Parent=Physo131767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 394033 394932 . + 0 ID=Physo131767;Parent=Physo131767;rank=1 scaffold_17 . exon 394033 394932 . + . ID=Physo131767.1;Parent=Physo131767;constitutive=1;rank=1 scaffold_17 . CDS 395050 395251 . + 0 ID=Physo131767;Parent=Physo131767;rank=2 scaffold_17 . exon 395050 395251 . + . ID=Physo131767.2;Parent=Physo131767;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 395300 396105 . + 0 ID=Physo131767;Parent=Physo131767;rank=3 scaffold_17 . exon 395300 396105 . + . ID=Physo131767.3;Parent=Physo131767;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . repeat_region 400242 400290 . ? . description=trf scaffold_17 ensembl protein_coding_gene 404163 407972 . - . ID=Physo113885;biotype=protein_coding;external_name=estExt_Genewise1.C_170010;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 404163 407972 . - . ID=Physo113885;Parent=Physo113885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 404163 405032 . - 0 ID=Physo113885;Parent=Physo113885;rank=7 scaffold_17 . exon 404163 405032 . - . ID=Physo113885.8;Parent=Physo113885;constitutive=1;rank=8 scaffold_17 . CDS 405111 405221 . - 0 ID=Physo113885;Parent=Physo113885;rank=6 scaffold_17 . exon 405111 405221 . - . ID=Physo113885.7;Parent=Physo113885;constitutive=1;rank=7 scaffold_17 . CDS 405291 405740 . - 0 ID=Physo113885;Parent=Physo113885;rank=5 scaffold_17 . exon 405291 405740 . - . ID=Physo113885.6;Parent=Physo113885;constitutive=1;rank=6 scaffold_17 . CDS 405822 405956 . - 0 ID=Physo113885;Parent=Physo113885;rank=4 scaffold_17 . exon 405822 405956 . - . ID=Physo113885.5;Parent=Physo113885;constitutive=1;rank=5 scaffold_17 . CDS 406026 407078 . - 0 ID=Physo113885;Parent=Physo113885;rank=3 scaffold_17 . exon 406026 407078 . - . ID=Physo113885.4;Parent=Physo113885;constitutive=1;rank=4 scaffold_17 . CDS 407160 407338 . - 0 ID=Physo113885;Parent=Physo113885;rank=2 scaffold_17 . exon 407160 407338 . - . ID=Physo113885.3;Parent=Physo113885;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 407409 407661 . - 0 ID=Physo113885;Parent=Physo113885;rank=1 scaffold_17 . exon 407409 407760 . - . ID=Physo113885.2;Parent=Physo113885;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_17 . exon 407841 407972 . - . ID=Physo113885.1;Parent=Physo113885;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 400366 403980 . + . ID=Physo131768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170110;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 400366 403980 . + . ID=Physo131768;Parent=Physo131768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 400366 403980 . + 0 ID=Physo131768;Parent=Physo131768;rank=1 scaffold_17 . exon 400366 403980 . + . ID=Physo131768.1;Parent=Physo131768;constitutive=1;rank=1 scaffold_17 . biological_region 408693 408696 0.999 + . logic_name=eponine scaffold_17 . biological_region 408947 408949 0.999 - . logic_name=eponine scaffold_17 . repeat_region 414857 414864 . ? . description=dust scaffold_17 . biological_region 416640 416640 0.999 - . logic_name=eponine scaffold_17 . biological_region 417791 417793 0.999 + . logic_name=eponine scaffold_17 . biological_region 417875 417876 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 413555 418238 . + . ID=Physo156369;biotype=protein_coding;external_name=C_scaffold_17000038;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 413555 418238 . + . ID=Physo156369;Parent=Physo156369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 413555 413940 . + 0 ID=Physo156369;Parent=Physo156369;rank=1 scaffold_17 . exon 413555 413940 . + . ID=Physo156369.1;Parent=Physo156369;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 414100 414591 . + 0 ID=Physo156369;Parent=Physo156369;rank=2 scaffold_17 . exon 414100 414591 . + . ID=Physo156369.2;Parent=Physo156369;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 414613 414798 . + 0 ID=Physo156369;Parent=Physo156369;rank=3 scaffold_17 . exon 414613 414798 . + . ID=Physo156369.3;Parent=Physo156369;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_17 . CDS 415055 415275 . + 0 ID=Physo156369;Parent=Physo156369;rank=4 scaffold_17 . exon 415055 415275 . + . ID=Physo156369.4;Parent=Physo156369;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 415351 415545 . + 0 ID=Physo156369;Parent=Physo156369;rank=5 scaffold_17 . exon 415351 415545 . + . ID=Physo156369.5;Parent=Physo156369;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 415630 415996 . + 0 ID=Physo156369;Parent=Physo156369;rank=6 scaffold_17 . exon 415630 415996 . + . ID=Physo156369.6;Parent=Physo156369;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_17 . CDS 416244 416931 . + 0 ID=Physo156369;Parent=Physo156369;rank=7 scaffold_17 . exon 416244 416931 . + . ID=Physo156369.7;Parent=Physo156369;constitutive=1;ensembl_phase=2;rank=7 scaffold_17 . CDS 417375 417772 . + 0 ID=Physo156369;Parent=Physo156369;rank=8 scaffold_17 . exon 417375 417772 . + . ID=Physo156369.8;Parent=Physo156369;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_17 . CDS 417857 418238 . + 0 ID=Physo156369;Parent=Physo156369;rank=9 scaffold_17 . exon 417857 418238 . + . ID=Physo156369.9;Parent=Physo156369;constitutive=1;ensembl_phase=2;rank=9 scaffold_17 . repeat_region 419058 419109 . ? . description=trf scaffold_17 . repeat_region 419121 419173 . ? . description=trf scaffold_17 . repeat_region 419139 419187 . ? . description=trf scaffold_17 . repeat_region 422002 422034 . ? . description=trf scaffold_17 ensembl protein_coding_gene 418613 419542 . - . ID=Physo131772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170114;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 418613 419542 . - . ID=Physo131772;Parent=Physo131772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 418613 419542 . - 0 ID=Physo131772;Parent=Physo131772;rank=1 scaffold_17 . exon 418613 419542 . - . ID=Physo131772.1;Parent=Physo131772;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 420728 421552 . - . ID=Physo131773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170115;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 420728 421552 . - . ID=Physo131773;Parent=Physo131773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 420728 421552 . - 0 ID=Physo131773;Parent=Physo131773;rank=1 scaffold_17 . exon 420728 421552 . - . ID=Physo131773.1;Parent=Physo131773;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 422897 423655 . - . ID=Physo131774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170116;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 422897 423655 . - . ID=Physo131774;Parent=Physo131774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 422897 423655 . - 0 ID=Physo131774;Parent=Physo131774;rank=1 scaffold_17 . exon 422897 423655 . - . ID=Physo131774.1;Parent=Physo131774;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 424834 425526 . - . ID=Physo131775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170117;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 424834 425526 . - . ID=Physo131775;Parent=Physo131775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 424834 425526 . - 0 ID=Physo131775;Parent=Physo131775;rank=1 scaffold_17 . exon 424834 425526 . - . ID=Physo131775.1;Parent=Physo131775;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 426294 430371 . + . ID=Physo131776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170118;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 426294 430371 . + . ID=Physo131776;Parent=Physo131776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 426294 426356 . + 0 ID=Physo131776;Parent=Physo131776;rank=1 scaffold_17 . exon 426294 426356 . + . ID=Physo131776.1;Parent=Physo131776;constitutive=1;rank=1 scaffold_17 . CDS 426428 426472 . + 0 ID=Physo131776;Parent=Physo131776;rank=2 scaffold_17 . exon 426428 426472 . + . ID=Physo131776.2;Parent=Physo131776;constitutive=1;rank=2 scaffold_17 . CDS 426561 428765 . + 0 ID=Physo131776;Parent=Physo131776;rank=3 scaffold_17 . exon 426561 428765 . + . ID=Physo131776.3;Parent=Physo131776;constitutive=1;rank=3 scaffold_17 . CDS 428846 428938 . + 0 ID=Physo131776;Parent=Physo131776;rank=4 scaffold_17 . CDS 429017 429457 . + 0 ID=Physo131776;Parent=Physo131776;rank=5 scaffold_17 . CDS 429550 430371 . + 0 ID=Physo131776;Parent=Physo131776;rank=6 scaffold_17 . biological_region 429348 429349 0.999 + . logic_name=eponine scaffold_17 . biological_region 429727 429730 0.999 + . logic_name=eponine scaffold_17 . biological_region 429829 429831 0.999 + . logic_name=eponine scaffold_17 . biological_region 430059 430061 0.999 - . logic_name=eponine scaffold_17 . biological_region 430696 430701 0.999 + . logic_name=eponine scaffold_17 . biological_region 430706 430707 0.999 - . logic_name=eponine scaffold_17 . biological_region 430903 430909 0.999 - . logic_name=eponine scaffold_17 . biological_region 431175 431177 0.999 + . logic_name=eponine scaffold_17 . biological_region 431597 431597 0.999 + . logic_name=eponine scaffold_17 . repeat_region 432682 432825 . + . description=(CTG)n scaffold_17 . repeat_region 434014 434021 . ? . description=dust scaffold_17 . repeat_region 438015 438022 . ? . description=dust scaffold_17 ensembl snoRNA_gene 437562 437675 . - . ID=EPrPSOG00000000243;biotype=snoRNA;description=Small nucleolar RNA SNORD14 [Source:RFAM%3BAcc:RF00016];external_name=SNORD14;logic_name=ncrna_eg scaffold_17 ensembl snoRNA 437562 437675 . - . ID=EPrPSOT00000000243;Parent=EPrPSOG00000000243;biotype=snoRNA;logic_name=ncrna_eg scaffold_17 ensembl gene 437974 438256 . + . ID=EPrPSOG00000000254;biotype=MRP_RNA;description=RNase MRP [Source:RFAM%3BAcc:RF00030];external_name=RNase_MRP;logic_name=ncrna_eg scaffold_17 ensembl transcript 437974 438256 . + . ID=EPrPSOT00000000254;Parent=EPrPSOG00000000254;biotype=MRP_RNA;logic_name=ncrna_eg scaffold_17 . exon 437562 437675 . - . ID=EPrPSOE00000000243;Parent=EPrPSOT00000000243;constitutive=1;rank=1 scaffold_17 . exon 437974 438256 . + . ID=EPrPSOE00000000254;Parent=EPrPSOT00000000254;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 430423 432026 . - . ID=Physo108585;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170009;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 430423 432026 . - . ID=Physo108585;Parent=Physo108585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 430423 432026 . - . ID=Physo108585.1;Parent=Physo108585;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_17 . CDS 430557 432026 . - 0 ID=Physo108585;Parent=Physo108585;rank=1 scaffold_17 . exon 428846 428938 . + . ID=Physo131776.4;Parent=Physo131776;constitutive=1;rank=4 scaffold_17 . exon 429017 429457 . + . ID=Physo131776.5;Parent=Physo131776;constitutive=1;rank=5 scaffold_17 . exon 429550 430371 . + . ID=Physo131776.6;Parent=Physo131776;constitutive=1;rank=6 scaffold_17 ensembl protein_coding_gene 434716 436152 . + . ID=Physo131778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170120;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 434716 436152 . + . ID=Physo131778;Parent=Physo131778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 434716 435462 . + 0 ID=Physo131778;Parent=Physo131778;rank=1 scaffold_17 . exon 434716 435462 . + . ID=Physo131778.1;Parent=Physo131778;constitutive=1;rank=1 scaffold_17 . CDS 435745 436152 . + 0 ID=Physo131778;Parent=Physo131778;rank=2 scaffold_17 . exon 435745 436152 . + . ID=Physo131778.2;Parent=Physo131778;constitutive=1;rank=2 scaffold_17 . repeat_region 439597 439630 . ? . description=trf scaffold_17 . repeat_region 446572 446596 . ? . description=trf scaffold_17 ensembl snoRNA_gene 438392 438505 . + . ID=EPrPSOG00000000124;biotype=snoRNA;description=Small nucleolar RNA SNORD14 [Source:RFAM%3BAcc:RF00016];external_name=SNORD14;logic_name=ncrna_eg scaffold_17 ensembl snoRNA 438392 438505 . + . ID=EPrPSOT00000000124;Parent=EPrPSOG00000000124;biotype=snoRNA;logic_name=ncrna_eg scaffold_17 . exon 438392 438505 . + . ID=EPrPSOE00000000124;Parent=EPrPSOT00000000124;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 438805 441532 . + . ID=Physo131779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170121;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 438805 441532 . + . ID=Physo131779;Parent=Physo131779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 438805 439273 . + 0 ID=Physo131779;Parent=Physo131779;rank=1 scaffold_17 . exon 438805 439273 . + . ID=Physo131779.1;Parent=Physo131779;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 439344 441532 . + 0 ID=Physo131779;Parent=Physo131779;rank=2 scaffold_17 . exon 439344 441532 . + . ID=Physo131779.2;Parent=Physo131779;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 ensembl protein_coding_gene 441586 444949 . - . ID=Physo131780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170122;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 441586 444949 . - . ID=Physo131780;Parent=Physo131780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 441586 444669 . - . ID=Physo131780.2;Parent=Physo131780;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_17 . CDS 441678 444669 . - 0 ID=Physo131780;Parent=Physo131780;rank=2 scaffold_17 . CDS 444777 444949 . - 0 ID=Physo131780;Parent=Physo131780;rank=1 scaffold_17 . exon 444777 444949 . - . ID=Physo131780.1;Parent=Physo131780;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 445851 446565 . + . ID=Physo131781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170123;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 445851 446565 . + . ID=Physo131781;Parent=Physo131781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 445851 446565 . + . ID=Physo131781.1;Parent=Physo131781;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 445915 446565 . + 0 ID=Physo131781;Parent=Physo131781;rank=1 scaffold_17 ensembl protein_coding_gene 447721 449772 . + . ID=Physo131782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170124;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 447721 449772 . + . ID=Physo131782;Parent=Physo131782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 447721 447848 . + . ID=Physo131782.1;Parent=Physo131782;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 447807 447848 . + 0 ID=Physo131782;Parent=Physo131782;rank=1 scaffold_17 . CDS 447943 449350 . + 0 ID=Physo131782;Parent=Physo131782;rank=2 scaffold_17 . exon 447943 449350 . + . ID=Physo131782.2;Parent=Physo131782;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 449383 449477 . + 0 ID=Physo131782;Parent=Physo131782;rank=3 scaffold_17 . biological_region 450266 450268 0.999 + . logic_name=eponine scaffold_17 . biological_region 450403 450406 0.999 - . logic_name=eponine scaffold_17 . biological_region 452241 452242 0.999 + . logic_name=eponine scaffold_17 . biological_region 452476 452480 0.999 + . logic_name=eponine scaffold_17 . biological_region 452609 452610 0.999 - . logic_name=eponine scaffold_17 . biological_region 452845 452847 0.999 + . logic_name=eponine scaffold_17 . biological_region 452984 452994 0.999 - . logic_name=eponine scaffold_17 . repeat_region 453273 453303 . ? . description=dust scaffold_17 . repeat_region 453275 453306 . + . description=(TACTG)n scaffold_17 . exon 449383 449772 . + . ID=Physo131782.3;Parent=Physo131782;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 450151 452650 . - . ID=Physo131783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170125;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 450151 452650 . - . ID=Physo131783;Parent=Physo131783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 450151 452000 . - 0 ID=Physo131783;Parent=Physo131783;rank=3 scaffold_17 . exon 450151 452000 . - . ID=Physo131783.3;Parent=Physo131783;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 452085 452415 . - 0 ID=Physo131783;Parent=Physo131783;rank=2 scaffold_17 . exon 452085 452415 . - . ID=Physo131783.2;Parent=Physo131783;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 452483 452650 . - 0 ID=Physo131783;Parent=Physo131783;rank=1 scaffold_17 . exon 452483 452650 . - . ID=Physo131783.1;Parent=Physo131783;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 452819 455698 . + . ID=Physo131784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170126;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 452819 455698 . + . ID=Physo131784;Parent=Physo131784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 452819 453199 . + . ID=Physo131784.1;Parent=Physo131784;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 452906 453199 . + 0 ID=Physo131784;Parent=Physo131784;rank=1 scaffold_17 . CDS 453305 453485 . + 0 ID=Physo131784;Parent=Physo131784;rank=2 scaffold_17 . exon 453305 453485 . + . ID=Physo131784.2;Parent=Physo131784;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 453651 453671 . + 0 ID=Physo131784;Parent=Physo131784;rank=3 scaffold_17 . exon 453651 453671 . + . ID=Physo131784.3;Parent=Physo131784;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 453761 453838 . + 0 ID=Physo131784;Parent=Physo131784;rank=4 scaffold_17 . exon 453761 453838 . + . ID=Physo131784.4;Parent=Physo131784;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 453918 454117 . + 0 ID=Physo131784;Parent=Physo131784;rank=5 scaffold_17 . exon 453918 454117 . + . ID=Physo131784.5;Parent=Physo131784;constitutive=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 454212 454247 . + 0 ID=Physo131784;Parent=Physo131784;rank=6 scaffold_17 . exon 454212 454247 . + . ID=Physo131784.6;Parent=Physo131784;constitutive=1;rank=6 scaffold_17 . CDS 454315 454440 . + 0 ID=Physo131784;Parent=Physo131784;rank=7 scaffold_17 . exon 454315 454440 . + . ID=Physo131784.7;Parent=Physo131784;constitutive=1;rank=7 scaffold_17 . CDS 454522 454718 . + 0 ID=Physo131784;Parent=Physo131784;rank=8 scaffold_17 . exon 454522 454718 . + . ID=Physo131784.8;Parent=Physo131784;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_17 . CDS 454813 454914 . + 0 ID=Physo131784;Parent=Physo131784;rank=9 scaffold_17 . exon 454813 454914 . + . ID=Physo131784.9;Parent=Physo131784;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_17 . CDS 455168 455267 . + 0 ID=Physo131784;Parent=Physo131784;rank=10 scaffold_17 . exon 455168 455267 . + . ID=Physo131784.10;Parent=Physo131784;constitutive=1;ensembl_phase=2;rank=10 scaffold_17 . CDS 455351 455698 . + 0 ID=Physo131784;Parent=Physo131784;rank=11 scaffold_17 . exon 455351 455698 . + . ID=Physo131784.11;Parent=Physo131784;constitutive=1;rank=11 scaffold_17 ensembl protein_coding_gene 457665 460366 . - . ID=Physo131785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170127;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 457665 460366 . - . ID=Physo131785;Parent=Physo131785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 457665 458015 . - 0 ID=Physo131785;Parent=Physo131785;rank=3 scaffold_17 . exon 457665 458015 . - . ID=Physo131785.3;Parent=Physo131785;constitutive=1;rank=3 scaffold_17 . CDS 458208 458221 . - 0 ID=Physo131785;Parent=Physo131785;rank=2 scaffold_17 . exon 458208 458221 . - . ID=Physo131785.2;Parent=Physo131785;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 458308 460366 . - 0 ID=Physo131785;Parent=Physo131785;rank=1 scaffold_17 . repeat_region 460014 460041 . ? . description=trf scaffold_17 . repeat_region 461443 461494 . ? . description=trf scaffold_17 . repeat_region 461443 461494 . ? . description=trf scaffold_17 . repeat_region 461653 461677 . ? . description=trf scaffold_17 . exon 458308 460366 . - . ID=Physo131785.1;Parent=Physo131785;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 461030 462163 . + . ID=Physo131786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170128;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 461030 462163 . + . ID=Physo131786;Parent=Physo131786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 461030 462163 . + 0 ID=Physo131786;Parent=Physo131786;rank=1 scaffold_17 . exon 461030 462163 . + . ID=Physo131786.1;Parent=Physo131786;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 462969 470307 . - . ID=Physo131787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170129;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 462969 470307 . - . ID=Physo131787;Parent=Physo131787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 462969 464795 . - 0 ID=Physo131787;Parent=Physo131787;rank=2 scaffold_17 . exon 462969 464795 . - . ID=Physo131787.2;Parent=Physo131787;constitutive=1;rank=2 scaffold_17 . CDS 464974 470307 . - 0 ID=Physo131787;Parent=Physo131787;rank=1 scaffold_17 . exon 464974 470307 . - . ID=Physo131787.1;Parent=Physo131787;constitutive=1;rank=1 scaffold_17 . biological_region 470072 470077 0.999 + . logic_name=eponine scaffold_17 . biological_region 470109 470114 0.999 + . logic_name=eponine scaffold_17 . biological_region 470167 470174 0.999 - . logic_name=eponine scaffold_17 . biological_region 470180 470181 0.999 + . logic_name=eponine scaffold_17 . biological_region 471438 471439 0.999 - . logic_name=eponine scaffold_17 . repeat_region 471842 471901 . ? . description=dust scaffold_17 . biological_region 474569 474571 0.999 + . logic_name=eponine scaffold_17 . biological_region 475128 475128 0.999 + . logic_name=eponine scaffold_17 . biological_region 475261 475265 0.999 + . logic_name=eponine scaffold_17 . biological_region 475284 475296 0.999 + . logic_name=eponine scaffold_17 . biological_region 475416 475421 0.999 - . logic_name=eponine scaffold_17 . biological_region 476889 476890 0.999 + . logic_name=eponine scaffold_17 . biological_region 477422 477424 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 470674 472059 . - . ID=Physo131788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170130;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 470674 472059 . - . ID=Physo131788;Parent=Physo131788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 470674 472059 . - 0 ID=Physo131788;Parent=Physo131788;rank=1 scaffold_17 . exon 470674 472059 . - . ID=Physo131788.1;Parent=Physo131788;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 472261 472737 . - . ID=Physo131789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170131;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 472261 472737 . - . ID=Physo131789;Parent=Physo131789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 472261 472737 . - 0 ID=Physo131789;Parent=Physo131789;rank=1 scaffold_17 . exon 472261 472737 . - . ID=Physo131789.1;Parent=Physo131789;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 474544 475527 . - . ID=Physo131790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170132;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 474544 475527 . - . ID=Physo131790;Parent=Physo131790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 474544 475515 . - 0 ID=Physo131790;Parent=Physo131790;rank=1 scaffold_17 . exon 474544 475527 . - . ID=Physo131790.1;Parent=Physo131790;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 479684 480475 . - . ID=Physo131791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170133;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 479684 480475 . - . ID=Physo131791;Parent=Physo131791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 479684 480475 . - 0 ID=Physo131791;Parent=Physo131791;rank=1 scaffold_17 . exon 479684 480475 . - . ID=Physo131791.1;Parent=Physo131791;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 485492 486919 . + . ID=Physo131792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170134;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 485492 486919 . + . ID=Physo131792;Parent=Physo131792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 485492 486103 . + 0 ID=Physo131792;Parent=Physo131792;rank=1 scaffold_17 . exon 485492 486103 . + . ID=Physo131792.1;Parent=Physo131792;constitutive=1;rank=1 scaffold_17 . CDS 486289 486822 . + 0 ID=Physo131792;Parent=Physo131792;rank=2 scaffold_17 . exon 486289 486822 . + . ID=Physo131792.2;Parent=Physo131792;constitutive=1;rank=2 scaffold_17 . CDS 486848 486919 . + 0 ID=Physo131792;Parent=Physo131792;rank=3 scaffold_17 . exon 486848 486919 . + . ID=Physo131792.3;Parent=Physo131792;constitutive=1;rank=3 scaffold_17 ensembl protein_coding_gene 487745 488419 . + . ID=Physo131793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170135;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 487745 488419 . + . ID=Physo131793;Parent=Physo131793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 487745 488419 . + 0 ID=Physo131793;Parent=Physo131793;rank=1 scaffold_17 . exon 487745 488419 . + . ID=Physo131793.1;Parent=Physo131793;constitutive=1;rank=1 scaffold_17 . repeat_region 488483 488490 . ? . description=dust scaffold_17 . biological_region 488802 488809 0.999 + . logic_name=eponine scaffold_17 . biological_region 488835 488837 0.999 - . logic_name=eponine scaffold_17 . biological_region 488858 488860 0.999 + . logic_name=eponine scaffold_17 . biological_region 488889 488894 0.999 + . logic_name=eponine scaffold_17 . repeat_region 489360 489390 . ? . description=dust scaffold_17 . repeat_region 489360 489447 . + . description=(CAG)n scaffold_17 . biological_region 490268 490268 0.999 + . logic_name=eponine scaffold_17 . biological_region 491311 491314 0.999 + . logic_name=eponine scaffold_17 . repeat_region 491747 491787 . ? . description=trf scaffold_17 . biological_region 493039 493047 0.999 + . logic_name=eponine scaffold_17 . biological_region 493163 493170 0.999 + . logic_name=eponine scaffold_17 . biological_region 493163 493171 0.999 - . logic_name=eponine scaffold_17 . repeat_region 493616 493673 . + . description=(CTG)n scaffold_17 . repeat_region 493620 493672 . ? . description=trf scaffold_17 . biological_region 497660 497665 0.999 + . logic_name=eponine scaffold_17 . biological_region 497677 497682 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 489834 490820 . - . ID=Physo113895;biotype=protein_coding;external_name=estExt_Genewise1.C_170020;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 489834 490820 . - . ID=Physo113895;Parent=Physo113895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 489834 490088 . - 0 ID=Physo113895;Parent=Physo113895;rank=2 scaffold_17 . exon 489834 490088 . - . ID=Physo113895.3;Parent=Physo113895;constitutive=1;rank=3 scaffold_17 . CDS 490191 490589 . - 0 ID=Physo113895;Parent=Physo113895;rank=1 scaffold_17 . exon 490191 490661 . - . ID=Physo113895.2;Parent=Physo113895;constitutive=1;ensembl_phase=-1;rank=2 scaffold_17 . exon 490746 490820 . - . ID=Physo113895.1;Parent=Physo113895;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 488599 489456 . + . ID=Physo131794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170136;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 488599 489456 . + . ID=Physo131794;Parent=Physo131794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 488599 489119 . + . ID=Physo131794.1;Parent=Physo131794;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 488622 489119 . + 0 ID=Physo131794;Parent=Physo131794;rank=1 scaffold_17 . CDS 489202 489456 . + 0 ID=Physo131794;Parent=Physo131794;rank=2 scaffold_17 . exon 489202 489456 . + . ID=Physo131794.2;Parent=Physo131794;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 493055 493870 . + . ID=Physo131797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170139;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 493055 493870 . + . ID=Physo131797;Parent=Physo131797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 493055 493843 . + 0 ID=Physo131797;Parent=Physo131797;rank=1 scaffold_17 . exon 493055 493870 . + . ID=Physo131797.1;Parent=Physo131797;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 495710 496960 . + . ID=Physo131798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170140;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 495710 496960 . + . ID=Physo131798;Parent=Physo131798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 495710 496960 . + 0 ID=Physo131798;Parent=Physo131798;rank=1 scaffold_17 . exon 495710 496960 . + . ID=Physo131798.1;Parent=Physo131798;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 491249 492715 . + . ID=Physo156374;biotype=protein_coding;external_name=C_scaffold_17000043;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 491249 492715 . + . ID=Physo156374;Parent=Physo156374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 491249 491416 . + 0 ID=Physo156374;Parent=Physo156374;rank=1 scaffold_17 . exon 491249 491416 . + . ID=Physo156374.1;Parent=Physo156374;constitutive=1;rank=1 scaffold_17 . CDS 491438 492715 . + 0 ID=Physo156374;Parent=Physo156374;rank=2 scaffold_17 . exon 491438 492715 . + . ID=Physo156374.2;Parent=Physo156374;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 497046 499476 . - . ID=Physo156378;biotype=protein_coding;external_name=C_scaffold_17000047;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 497046 499476 . - . ID=Physo156378;Parent=Physo156378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 497046 497218 . - 0 ID=Physo156378;Parent=Physo156378;rank=7 scaffold_17 . exon 497046 497218 . - . ID=Physo156378.7;Parent=Physo156378;constitutive=1;ensembl_phase=1;rank=7 scaffold_17 . CDS 497297 497370 . - 0 ID=Physo156378;Parent=Physo156378;rank=6 scaffold_17 . exon 497297 497370 . - . ID=Physo156378.6;Parent=Physo156378;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_17 . CDS 497497 498428 . - 0 ID=Physo156378;Parent=Physo156378;rank=5 scaffold_17 . exon 497497 498428 . - . ID=Physo156378.5;Parent=Physo156378;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_17 . CDS 498495 498687 . - 0 ID=Physo156378;Parent=Physo156378;rank=4 scaffold_17 . CDS 498758 498995 . - 0 ID=Physo156378;Parent=Physo156378;rank=3 scaffold_17 . CDS 499070 499142 . - 0 ID=Physo156378;Parent=Physo156378;rank=2 scaffold_17 . CDS 499222 499476 . - 0 ID=Physo156378;Parent=Physo156378;rank=1 scaffold_17 ensembl protein_coding_gene 499732 501337 . + . ID=Physo113901;biotype=protein_coding;external_name=estExt_Genewise1.C_170026;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 499732 501337 . + . ID=Physo113901;Parent=Physo113901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 499732 500568 . + . ID=Physo113901.1;Parent=Physo113901;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 499861 500568 . + 0 ID=Physo113901;Parent=Physo113901;rank=1 scaffold_17 . CDS 500623 500814 . + 0 ID=Physo113901;Parent=Physo113901;rank=2 scaffold_17 . exon 500623 500814 . + . ID=Physo113901.2;Parent=Physo113901;constitutive=1;rank=2 scaffold_17 . CDS 500891 501337 . + 0 ID=Physo113901;Parent=Physo113901;rank=3 scaffold_17 . exon 500891 501337 . + . ID=Physo113901.3;Parent=Physo113901;constitutive=1;rank=3 scaffold_17 ensembl protein_coding_gene 504544 507420 . - . ID=Physo131801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170143;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 504544 507420 . - . ID=Physo131801;Parent=Physo131801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 504544 507297 . - 0 ID=Physo131801;Parent=Physo131801;rank=1 scaffold_17 . exon 504544 507420 . - . ID=Physo131801.1;Parent=Physo131801;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 507801 509384 . + . ID=Physo131802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170144;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 507801 509384 . + . ID=Physo131802;Parent=Physo131802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 507801 509384 . + 0 ID=Physo131802;Parent=Physo131802;rank=1 scaffold_17 . exon 507801 509384 . + . ID=Physo131802.1;Parent=Physo131802;constitutive=1;rank=1 scaffold_17 . exon 498495 498687 . - . ID=Physo156378.4;Parent=Physo156378;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . exon 498758 498995 . - . ID=Physo156378.3;Parent=Physo156378;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_17 . exon 499070 499142 . - . ID=Physo156378.2;Parent=Physo156378;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . exon 499222 499476 . - . ID=Physo156378.1;Parent=Physo156378;constitutive=1;rank=1 scaffold_17 . biological_region 508112 508115 0.999 + . logic_name=eponine scaffold_17 . biological_region 508214 508216 0.999 - . logic_name=eponine scaffold_17 . biological_region 508226 508230 0.999 + . logic_name=eponine scaffold_17 . biological_region 508291 508297 0.999 - . logic_name=eponine scaffold_17 . biological_region 508309 508317 0.999 - . logic_name=eponine scaffold_17 . biological_region 510914 510916 0.999 + . logic_name=eponine scaffold_17 . repeat_region 511145 511205 . ? . description=trf scaffold_17 . biological_region 515174 515178 0.999 - . logic_name=eponine scaffold_17 . biological_region 516607 516611 0.999 - . logic_name=eponine scaffold_17 . biological_region 517036 517040 0.999 - . logic_name=eponine scaffold_17 . biological_region 517093 517096 0.999 + . logic_name=eponine scaffold_17 . biological_region 518055 518057 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 509468 511044 . - . ID=Physo131803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170145;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 509468 511044 . - . ID=Physo131803;Parent=Physo131803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 509468 509720 . - . ID=Physo131803.5;Parent=Physo131803;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_17 . CDS 509602 509720 . - 0 ID=Physo131803;Parent=Physo131803;rank=5 scaffold_17 . CDS 509792 509899 . - 0 ID=Physo131803;Parent=Physo131803;rank=4 scaffold_17 . exon 509792 509899 . - . ID=Physo131803.4;Parent=Physo131803;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 509975 510650 . - 0 ID=Physo131803;Parent=Physo131803;rank=3 scaffold_17 . exon 509975 510650 . - . ID=Physo131803.3;Parent=Physo131803;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_17 . CDS 510734 510835 . - 0 ID=Physo131803;Parent=Physo131803;rank=2 scaffold_17 . exon 510734 510835 . - . ID=Physo131803.2;Parent=Physo131803;constitutive=1;rank=2 scaffold_17 . CDS 510940 511044 . - 0 ID=Physo131803;Parent=Physo131803;rank=1 scaffold_17 . exon 510940 511044 . - . ID=Physo131803.1;Parent=Physo131803;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 515541 517467 . + . ID=Physo131804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170146;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 515541 517467 . + . ID=Physo131804;Parent=Physo131804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 515541 517467 . + . ID=Physo131804.1;Parent=Physo131804;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 515653 517374 . + 0 ID=Physo131804;Parent=Physo131804;rank=1 scaffold_17 ensembl protein_coding_gene 517809 518358 . + . ID=Physo131805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170147;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 517809 518358 . + . ID=Physo131805;Parent=Physo131805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 517809 518358 . + . ID=Physo131805.1;Parent=Physo131805;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 517815 518306 . + 0 ID=Physo131805;Parent=Physo131805;rank=1 scaffold_17 . repeat_region 522282 522289 . ? . description=dust scaffold_17 ensembl protein_coding_gene 518371 519302 . - . ID=Physo131806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170148;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 518371 519302 . - . ID=Physo131806;Parent=Physo131806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 518371 518449 . - 0 ID=Physo131806;Parent=Physo131806;rank=6 scaffold_17 . exon 518371 518449 . - . ID=Physo131806.6;Parent=Physo131806;constitutive=1;ensembl_phase=2;rank=6 scaffold_17 . CDS 518548 518735 . - 0 ID=Physo131806;Parent=Physo131806;rank=5 scaffold_17 . exon 518548 518735 . - . ID=Physo131806.5;Parent=Physo131806;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_17 . CDS 518769 518816 . - 0 ID=Physo131806;Parent=Physo131806;rank=4 scaffold_17 . exon 518769 518816 . - . ID=Physo131806.4;Parent=Physo131806;constitutive=1;rank=4 scaffold_17 . CDS 518892 518966 . - 0 ID=Physo131806;Parent=Physo131806;rank=3 scaffold_17 . exon 518892 518966 . - . ID=Physo131806.3;Parent=Physo131806;constitutive=1;rank=3 scaffold_17 . CDS 519030 519169 . - 0 ID=Physo131806;Parent=Physo131806;rank=2 scaffold_17 . exon 519030 519169 . - . ID=Physo131806.2;Parent=Physo131806;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 519248 519302 . - 0 ID=Physo131806;Parent=Physo131806;rank=1 scaffold_17 . exon 519248 519302 . - . ID=Physo131806.1;Parent=Physo131806;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 520884 522269 . - . ID=Physo131807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170149;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 520884 522269 . - . ID=Physo131807;Parent=Physo131807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 520884 521058 . - 0 ID=Physo131807;Parent=Physo131807;rank=7 scaffold_17 . exon 520884 521058 . - . ID=Physo131807.7;Parent=Physo131807;constitutive=1;ensembl_phase=2;rank=7 scaffold_17 . CDS 521131 521225 . - 0 ID=Physo131807;Parent=Physo131807;rank=6 scaffold_17 . exon 521131 521225 . - . ID=Physo131807.6;Parent=Physo131807;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_17 . CDS 521298 521360 . - 0 ID=Physo131807;Parent=Physo131807;rank=5 scaffold_17 . exon 521298 521360 . - . ID=Physo131807.5;Parent=Physo131807;constitutive=1;rank=5 scaffold_17 . CDS 521441 521717 . - 0 ID=Physo131807;Parent=Physo131807;rank=4 scaffold_17 . exon 521441 521717 . - . ID=Physo131807.4;Parent=Physo131807;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 521804 521877 . - 0 ID=Physo131807;Parent=Physo131807;rank=3 scaffold_17 . exon 521804 521877 . - . ID=Physo131807.3;Parent=Physo131807;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 521968 522120 . - 0 ID=Physo131807;Parent=Physo131807;rank=2 scaffold_17 . exon 521968 522120 . - . ID=Physo131807.2;Parent=Physo131807;constitutive=1;rank=2 scaffold_17 . CDS 522189 522269 . - 0 ID=Physo131807;Parent=Physo131807;rank=1 scaffold_17 . exon 522189 522269 . - . ID=Physo131807.1;Parent=Physo131807;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 523146 524824 . + . ID=Physo131808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170150;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 523146 524824 . + . ID=Physo131808;Parent=Physo131808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 523146 523243 . + 0 ID=Physo131808;Parent=Physo131808;rank=1 scaffold_17 . exon 523146 523243 . + . ID=Physo131808.1;Parent=Physo131808;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 523335 523860 . + 0 ID=Physo131808;Parent=Physo131808;rank=2 scaffold_17 . exon 523335 523860 . + . ID=Physo131808.2;Parent=Physo131808;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 523925 524249 . + 0 ID=Physo131808;Parent=Physo131808;rank=3 scaffold_17 . exon 523925 524249 . + . ID=Physo131808.3;Parent=Physo131808;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_17 . CDS 524730 524824 . + 0 ID=Physo131808;Parent=Physo131808;rank=4 scaffold_17 . exon 524730 524824 . + . ID=Physo131808.4;Parent=Physo131808;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 ensembl protein_coding_gene 525707 529661 . - . ID=Physo131809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170151;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 525707 529661 . - . ID=Physo131809;Parent=Physo131809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 525707 526683 . - 0 ID=Physo131809;Parent=Physo131809;rank=3 scaffold_17 . exon 525707 526683 . - . ID=Physo131809.3;Parent=Physo131809;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 526722 526723 . - 0 ID=Physo131809;Parent=Physo131809;rank=2 scaffold_17 . exon 526722 526723 . - . ID=Physo131809.2;Parent=Physo131809;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 526882 529661 . - 0 ID=Physo131809;Parent=Physo131809;rank=1 scaffold_17 . exon 526882 529661 . - . ID=Physo131809.1;Parent=Physo131809;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . repeat_region 530033 530060 . ? . description=trf scaffold_17 . biological_region 531422 531423 0.999 - . logic_name=eponine scaffold_17 . biological_region 532376 532376 0.999 + . logic_name=eponine scaffold_17 . biological_region 533358 533359 0.999 - . logic_name=eponine scaffold_17 . biological_region 534585 534592 0.999 + . logic_name=eponine scaffold_17 . biological_region 535762 535766 0.999 - . logic_name=eponine scaffold_17 . biological_region 536371 536374 0.999 + . logic_name=eponine scaffold_17 . biological_region 536654 536657 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 530813 531833 . - . ID=Physo108587;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170011;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 530813 531833 . - . ID=Physo108587;Parent=Physo108587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 530813 531582 . - . ID=Physo108587.2;Parent=Physo108587;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_17 . CDS 530863 531582 . - 0 ID=Physo108587;Parent=Physo108587;rank=2 scaffold_17 . CDS 531687 531833 . - 0 ID=Physo108587;Parent=Physo108587;rank=1 scaffold_17 . exon 531687 531833 . - . ID=Physo108587.1;Parent=Physo108587;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 532387 533436 . + . ID=Physo156385;biotype=protein_coding;external_name=C_scaffold_17000054;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 532387 533436 . + . ID=Physo156385;Parent=Physo156385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 532387 532651 . + 0 ID=Physo156385;Parent=Physo156385;rank=1 scaffold_17 . exon 532387 532651 . + . ID=Physo156385.1;Parent=Physo156385;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 532728 532802 . + 0 ID=Physo156385;Parent=Physo156385;rank=2 scaffold_17 . exon 532728 532802 . + . ID=Physo156385.2;Parent=Physo156385;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 532880 533436 . + 0 ID=Physo156385;Parent=Physo156385;rank=3 scaffold_17 . exon 532880 533436 . + . ID=Physo156385.3;Parent=Physo156385;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 533523 534249 . - . ID=Physo156386;biotype=protein_coding;external_name=C_scaffold_17000055;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 533523 534249 . - . ID=Physo156386;Parent=Physo156386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 533523 533781 . - 0 ID=Physo156386;Parent=Physo156386;rank=3 scaffold_17 . exon 533523 533781 . - . ID=Physo156386.3;Parent=Physo156386;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 533859 534091 . - 0 ID=Physo156386;Parent=Physo156386;rank=2 scaffold_17 . exon 533859 534091 . - . ID=Physo156386.2;Parent=Physo156386;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 534181 534249 . - 0 ID=Physo156386;Parent=Physo156386;rank=1 scaffold_17 . exon 534181 534249 . - . ID=Physo156386.1;Parent=Physo156386;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 534666 536528 . - . ID=Physo156387;biotype=protein_coding;external_name=C_scaffold_17000056;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 534666 536528 . - . ID=Physo156387;Parent=Physo156387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 534666 536528 . - 0 ID=Physo156387;Parent=Physo156387;rank=1 scaffold_17 . exon 534666 536528 . - . ID=Physo156387.1;Parent=Physo156387;constitutive=1;rank=1 scaffold_17 . repeat_region 541267 541285 . ? . description=dust scaffold_17 ensembl protein_coding_gene 540013 542230 . + . ID=Physo131814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170156;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 540013 542230 . + . ID=Physo131814;Parent=Physo131814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 540013 540047 . + 0 ID=Physo131814;Parent=Physo131814;rank=1 scaffold_17 . exon 540013 540047 . + . ID=Physo131814.1;Parent=Physo131814;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 540320 540410 . + 0 ID=Physo131814;Parent=Physo131814;rank=2 scaffold_17 . exon 540320 540410 . + . ID=Physo131814.2;Parent=Physo131814;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 540476 541127 . + 0 ID=Physo131814;Parent=Physo131814;rank=3 scaffold_17 . exon 540476 541127 . + . ID=Physo131814.3;Parent=Physo131814;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_17 . CDS 541302 542092 . + 0 ID=Physo131814;Parent=Physo131814;rank=4 scaffold_17 . exon 541302 542230 . + . ID=Physo131814.4;Parent=Physo131814;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_17 ensembl protein_coding_gene 542262 543204 . - . ID=Physo156389;biotype=protein_coding;external_name=C_scaffold_17000058;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 542262 543204 . - . ID=Physo156389;Parent=Physo156389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 542262 542414 . - 0 ID=Physo156389;Parent=Physo156389;rank=5 scaffold_17 . exon 542262 542414 . - . ID=Physo156389.5;Parent=Physo156389;constitutive=1;rank=5 scaffold_17 . CDS 542543 542654 . - 0 ID=Physo156389;Parent=Physo156389;rank=4 scaffold_17 . exon 542543 542654 . - . ID=Physo156389.4;Parent=Physo156389;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 542725 542876 . - 0 ID=Physo156389;Parent=Physo156389;rank=3 scaffold_17 . exon 542725 542876 . - . ID=Physo156389.3;Parent=Physo156389;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 542942 543017 . - 0 ID=Physo156389;Parent=Physo156389;rank=2 scaffold_17 . exon 542942 543017 . - . ID=Physo156389.2;Parent=Physo156389;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 543086 543204 . - 0 ID=Physo156389;Parent=Physo156389;rank=1 scaffold_17 . exon 543086 543204 . - . ID=Physo156389.1;Parent=Physo156389;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 543516 544251 . - . ID=Physo156390;biotype=protein_coding;external_name=C_scaffold_17000059;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 543516 544251 . - . ID=Physo156390;Parent=Physo156390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 543516 543665 . - 0 ID=Physo156390;Parent=Physo156390;rank=4 scaffold_17 . exon 543516 543665 . - . ID=Physo156390.4;Parent=Physo156390;constitutive=1;rank=4 scaffold_17 . CDS 543732 543906 . - 0 ID=Physo156390;Parent=Physo156390;rank=3 scaffold_17 . exon 543732 543906 . - . ID=Physo156390.3;Parent=Physo156390;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 543993 544144 . - 0 ID=Physo156390;Parent=Physo156390;rank=2 scaffold_17 . exon 543993 544144 . - . ID=Physo156390.2;Parent=Physo156390;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 544237 544251 . - 0 ID=Physo156390;Parent=Physo156390;rank=1 scaffold_17 . exon 544237 544251 . - . ID=Physo156390.1;Parent=Physo156390;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 544602 545270 . + . ID=Physo156391;biotype=protein_coding;external_name=C_scaffold_17000060;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 544602 545270 . + . ID=Physo156391;Parent=Physo156391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 544602 544650 . + 0 ID=Physo156391;Parent=Physo156391;rank=1 scaffold_17 . exon 544602 544650 . + . ID=Physo156391.1;Parent=Physo156391;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 544733 544954 . + 0 ID=Physo156391;Parent=Physo156391;rank=2 scaffold_17 . exon 544733 544954 . + . ID=Physo156391.2;Parent=Physo156391;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 545030 545130 . + 0 ID=Physo156391;Parent=Physo156391;rank=3 scaffold_17 . exon 545030 545130 . + . ID=Physo156391.3;Parent=Physo156391;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 545207 545270 . + 0 ID=Physo156391;Parent=Physo156391;rank=4 scaffold_17 . exon 545207 545270 . + . ID=Physo156391.4;Parent=Physo156391;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_17 . biological_region 549421 549423 0.999 - . logic_name=eponine scaffold_17 . biological_region 551396 551401 0.999 + . logic_name=eponine scaffold_17 . biological_region 552325 552328 0.999 + . logic_name=eponine scaffold_17 . biological_region 552590 552591 0.999 + . logic_name=eponine scaffold_17 . repeat_region 552673 552693 . ? . description=trf scaffold_17 . biological_region 553060 553062 0.999 + . logic_name=eponine scaffold_17 . repeat_region 553162 553188 . ? . description=trf scaffold_17 . biological_region 554671 554673 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 548204 550078 . + . ID=Physo113912;biotype=protein_coding;external_name=estExt_Genewise1.C_170037;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 548204 550078 . + . ID=Physo113912;Parent=Physo113912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 548204 550078 . + . ID=Physo113912.1;Parent=Physo113912;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 548210 550078 . + 0 ID=Physo113912;Parent=Physo113912;rank=1 scaffold_17 ensembl protein_coding_gene 557432 560345 . + . ID=Physo113916;biotype=protein_coding;external_name=estExt_Genewise1.C_170041;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 557432 560345 . + . ID=Physo113916;Parent=Physo113916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 557432 557658 . + . ID=Physo113916.1;Parent=Physo113916;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_17 . CDS 557549 557658 . + 0 ID=Physo113916;Parent=Physo113916;rank=1 scaffold_17 . CDS 557762 557859 . + 0 ID=Physo113916;Parent=Physo113916;rank=2 scaffold_17 . exon 557762 557859 . + . ID=Physo113916.2;Parent=Physo113916;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 557929 560345 . + 0 ID=Physo113916;Parent=Physo113916;rank=3 scaffold_17 ensembl protein_coding_gene 552649 555770 . + . ID=Physo131820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170162;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 552649 555770 . + . ID=Physo131820;Parent=Physo131820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 552649 552778 . + . ID=Physo131820.1;Parent=Physo131820;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_17 . CDS 552759 552778 . + 0 ID=Physo131820;Parent=Physo131820;rank=1 scaffold_17 . CDS 552867 553112 . + 0 ID=Physo131820;Parent=Physo131820;rank=2 scaffold_17 . exon 552867 553112 . + . ID=Physo131820.2;Parent=Physo131820;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 553150 554773 . + 0 ID=Physo131820;Parent=Physo131820;rank=3 scaffold_17 . exon 553150 554773 . + . ID=Physo131820.3;Parent=Physo131820;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 554852 554920 . + 0 ID=Physo131820;Parent=Physo131820;rank=4 scaffold_17 . exon 554852 554920 . + . ID=Physo131820.4;Parent=Physo131820;constitutive=1;rank=4 scaffold_17 . CDS 554993 555140 . + 0 ID=Physo131820;Parent=Physo131820;rank=5 scaffold_17 . exon 554993 555140 . + . ID=Physo131820.5;Parent=Physo131820;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_17 . CDS 555217 555298 . + 0 ID=Physo131820;Parent=Physo131820;rank=6 scaffold_17 . exon 555217 555298 . + . ID=Physo131820.6;Parent=Physo131820;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_17 . CDS 555370 555478 . + 0 ID=Physo131820;Parent=Physo131820;rank=7 scaffold_17 . exon 555370 555478 . + . ID=Physo131820.7;Parent=Physo131820;constitutive=1;ensembl_phase=2;rank=7 scaffold_17 . CDS 555543 555770 . + 0 ID=Physo131820;Parent=Physo131820;rank=8 scaffold_17 . exon 555543 555770 . + . ID=Physo131820.8;Parent=Physo131820;constitutive=1;rank=8 scaffold_17 ensembl protein_coding_gene 550395 552434 . - . ID=Physo156393;biotype=protein_coding;external_name=C_scaffold_17000062;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 550395 552434 . - . ID=Physo156393;Parent=Physo156393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 550395 550451 . - 0 ID=Physo156393;Parent=Physo156393;rank=8 scaffold_17 . exon 550395 550451 . - . ID=Physo156393.8;Parent=Physo156393;constitutive=1;rank=8 scaffold_17 . CDS 550539 550809 . - 0 ID=Physo156393;Parent=Physo156393;rank=7 scaffold_17 . exon 550539 550809 . - . ID=Physo156393.7;Parent=Physo156393;constitutive=1;ensembl_phase=2;rank=7 scaffold_17 . CDS 550882 551044 . - 0 ID=Physo156393;Parent=Physo156393;rank=6 scaffold_17 . exon 550882 551044 . - . ID=Physo156393.6;Parent=Physo156393;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_17 . CDS 551107 551506 . - 0 ID=Physo156393;Parent=Physo156393;rank=5 scaffold_17 . exon 551107 551506 . - . ID=Physo156393.5;Parent=Physo156393;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_17 . CDS 551584 551715 . - 0 ID=Physo156393;Parent=Physo156393;rank=4 scaffold_17 . exon 551584 551715 . - . ID=Physo156393.4;Parent=Physo156393;constitutive=1;rank=4 scaffold_17 . CDS 551807 552033 . - 0 ID=Physo156393;Parent=Physo156393;rank=3 scaffold_17 . exon 551807 552033 . - . ID=Physo156393.3;Parent=Physo156393;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 552108 552193 . - 0 ID=Physo156393;Parent=Physo156393;rank=2 scaffold_17 . exon 552108 552193 . - . ID=Physo156393.2;Parent=Physo156393;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 552307 552434 . - 0 ID=Physo156393;Parent=Physo156393;rank=1 scaffold_17 . exon 552307 552434 . - . ID=Physo156393.1;Parent=Physo156393;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . exon 557929 560345 . + . ID=Physo113916.3;Parent=Physo113916;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 563645 566332 . - . ID=Physo131822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170164;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 563645 566332 . - . ID=Physo131822;Parent=Physo131822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 563645 566332 . - 0 ID=Physo131822;Parent=Physo131822;rank=1 scaffold_17 . exon 563645 566332 . - . ID=Physo131822.1;Parent=Physo131822;constitutive=1;rank=1 scaffold_17 . biological_region 606762 606762 0.999 + . logic_name=eponine scaffold_17 . biological_region 607676 607679 0.999 + . logic_name=eponine scaffold_17 ensembl protein_coding_gene 606516 606845 . + . ID=Physo113917;biotype=protein_coding;external_name=estExt_Genewise1.C_170042;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 606516 606845 . + . ID=Physo113917;Parent=Physo113917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 606516 606845 . + . ID=Physo113917.1;Parent=Physo113917;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 606522 606845 . + 0 ID=Physo113917;Parent=Physo113917;rank=1 scaffold_17 . repeat_region 611380 611389 . ? . description=dust scaffold_17 ensembl protein_coding_gene 608846 609476 . - . ID=Physo131824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170166;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 608846 609476 . - . ID=Physo131824;Parent=Physo131824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 608846 609247 . - 0 ID=Physo131824;Parent=Physo131824;rank=2 scaffold_17 . exon 608846 609247 . - . ID=Physo131824.2;Parent=Physo131824;constitutive=1;rank=2 scaffold_17 . CDS 609330 609476 . - 0 ID=Physo131824;Parent=Physo131824;rank=1 scaffold_17 . exon 609330 609476 . - . ID=Physo131824.1;Parent=Physo131824;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 611038 612123 . + . ID=Physo131825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170167;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 611038 612123 . + . ID=Physo131825;Parent=Physo131825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 611038 611124 . + 0 ID=Physo131825;Parent=Physo131825;rank=1 scaffold_17 . exon 611038 611124 . + . ID=Physo131825.1;Parent=Physo131825;constitutive=1;rank=1 scaffold_17 . CDS 611210 611310 . + 0 ID=Physo131825;Parent=Physo131825;rank=2 scaffold_17 . exon 611210 611310 . + . ID=Physo131825.2;Parent=Physo131825;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 611428 611473 . + 0 ID=Physo131825;Parent=Physo131825;rank=3 scaffold_17 . exon 611428 611473 . + . ID=Physo131825.3;Parent=Physo131825;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 611539 611660 . + 0 ID=Physo131825;Parent=Physo131825;rank=4 scaffold_17 . exon 611539 611660 . + . ID=Physo131825.4;Parent=Physo131825;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_17 . CDS 611726 611775 . + 0 ID=Physo131825;Parent=Physo131825;rank=5 scaffold_17 . exon 611726 611775 . + . ID=Physo131825.5;Parent=Physo131825;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_17 . CDS 611816 612123 . + 0 ID=Physo131825;Parent=Physo131825;rank=6 scaffold_17 . exon 611816 612123 . + . ID=Physo131825.6;Parent=Physo131825;constitutive=1;ensembl_phase=1;rank=6 scaffold_17 ensembl protein_coding_gene 612225 613694 . - . ID=Physo131826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170168;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 612225 613694 . - . ID=Physo131826;Parent=Physo131826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 612225 612807 . - 0 ID=Physo131826;Parent=Physo131826;rank=2 scaffold_17 . exon 612225 612807 . - . ID=Physo131826.2;Parent=Physo131826;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 612892 613694 . - 0 ID=Physo131826;Parent=Physo131826;rank=1 scaffold_17 . exon 612892 613694 . - . ID=Physo131826.1;Parent=Physo131826;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 614115 615740 . + . ID=Physo156395;biotype=protein_coding;external_name=C_scaffold_17000064;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 614115 615740 . + . ID=Physo156395;Parent=Physo156395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 614115 614495 . + 0 ID=Physo156395;Parent=Physo156395;rank=1 scaffold_17 . exon 614115 614495 . + . ID=Physo156395.1;Parent=Physo156395;constitutive=1;rank=1 scaffold_17 . CDS 614571 614735 . + 0 ID=Physo156395;Parent=Physo156395;rank=2 scaffold_17 . exon 614571 614735 . + . ID=Physo156395.2;Parent=Physo156395;constitutive=1;rank=2 scaffold_17 . CDS 614809 614901 . + 0 ID=Physo156395;Parent=Physo156395;rank=3 scaffold_17 . exon 614809 614901 . + . ID=Physo156395.3;Parent=Physo156395;constitutive=1;rank=3 scaffold_17 . CDS 615108 615740 . + 0 ID=Physo156395;Parent=Physo156395;rank=4 scaffold_17 . exon 615108 615740 . + . ID=Physo156395.4;Parent=Physo156395;constitutive=1;rank=4 scaffold_17 . biological_region 618796 618800 0.999 + . logic_name=eponine scaffold_17 . biological_region 618851 618854 0.999 + . logic_name=eponine scaffold_17 . biological_region 618852 618859 0.999 - . logic_name=eponine scaffold_17 . biological_region 618870 618875 0.999 - . logic_name=eponine scaffold_17 . biological_region 618954 618956 0.999 - . logic_name=eponine scaffold_17 . biological_region 623556 623558 0.999 - . logic_name=eponine scaffold_17 . biological_region 624275 624279 0.999 + . logic_name=eponine scaffold_17 . biological_region 624281 624291 0.999 - . logic_name=eponine scaffold_17 . biological_region 624339 624343 0.999 + . logic_name=eponine scaffold_17 . biological_region 624416 624423 0.999 - . logic_name=eponine scaffold_17 . biological_region 624418 624418 0.999 + . logic_name=eponine scaffold_17 . biological_region 624825 624830 0.999 + . logic_name=eponine scaffold_17 . biological_region 624905 624906 0.999 + . logic_name=eponine scaffold_17 . biological_region 624996 624998 0.999 + . logic_name=eponine scaffold_17 . biological_region 625063 625067 0.999 - . logic_name=eponine scaffold_17 . biological_region 625095 625095 0.999 + . logic_name=eponine scaffold_17 . biological_region 625132 625134 0.999 - . logic_name=eponine scaffold_17 . biological_region 625288 625292 0.999 + . logic_name=eponine scaffold_17 . biological_region 625306 625308 0.999 + . logic_name=eponine scaffold_17 . repeat_region 625984 626065 . ? . description=trf scaffold_17 . repeat_region 625990 626157 . + . description=(CAG)n scaffold_17 . repeat_region 626021 626155 . ? . description=trf scaffold_17 . repeat_region 626036 626080 . ? . description=trf scaffold_17 . repeat_region 626077 626200 . ? . description=trf scaffold_17 . repeat_region 626108 626215 . ? . description=trf scaffold_17 . repeat_region 626669 626696 . ? . description=trf scaffold_17 . repeat_region 626903 626924 . ? . description=trf scaffold_17 ensembl protein_coding_gene 626276 628567 . + . ID=Physo108588;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170012;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 626276 628567 . + . ID=Physo108588;Parent=Physo108588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 626276 628567 . + 0 ID=Physo108588;Parent=Physo108588;rank=1 scaffold_17 . exon 626276 628567 . + . ID=Physo108588.1;Parent=Physo108588;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 618200 624043 . - . ID=Physo156396;biotype=protein_coding;external_name=C_scaffold_17000065;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 618200 624043 . - . ID=Physo156396;Parent=Physo156396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 618200 618669 . - 0 ID=Physo156396;Parent=Physo156396;rank=10 scaffold_17 . exon 618200 618669 . - . ID=Physo156396.10;Parent=Physo156396;constitutive=1;ensembl_phase=1;rank=10 scaffold_17 . CDS 618729 618963 . - 0 ID=Physo156396;Parent=Physo156396;rank=9 scaffold_17 . exon 618729 618963 . - . ID=Physo156396.9;Parent=Physo156396;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_17 . CDS 619189 619879 . - 0 ID=Physo156396;Parent=Physo156396;rank=8 scaffold_17 . exon 619189 619879 . - . ID=Physo156396.8;Parent=Physo156396;constitutive=1;ensembl_phase=2;rank=8 scaffold_17 . CDS 619959 620157 . - 0 ID=Physo156396;Parent=Physo156396;rank=7 scaffold_17 . exon 619959 620157 . - . ID=Physo156396.7;Parent=Physo156396;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_17 . CDS 620179 620810 . - 0 ID=Physo156396;Parent=Physo156396;rank=6 scaffold_17 . exon 620179 620810 . - . ID=Physo156396.6;Parent=Physo156396;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_17 . CDS 620888 621078 . - 0 ID=Physo156396;Parent=Physo156396;rank=5 scaffold_17 . exon 620888 621078 . - . ID=Physo156396.5;Parent=Physo156396;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_17 . CDS 621365 621624 . - 0 ID=Physo156396;Parent=Physo156396;rank=4 scaffold_17 . exon 621365 621624 . - . ID=Physo156396.4;Parent=Physo156396;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 622567 622650 . - 0 ID=Physo156396;Parent=Physo156396;rank=3 scaffold_17 . exon 622567 622650 . - . ID=Physo156396.3;Parent=Physo156396;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 622723 623587 . - 0 ID=Physo156396;Parent=Physo156396;rank=2 scaffold_17 . exon 622723 623587 . - . ID=Physo156396.2;Parent=Physo156396;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 623609 624043 . - 0 ID=Physo156396;Parent=Physo156396;rank=1 scaffold_17 . exon 623609 624043 . - . ID=Physo156396.1;Parent=Physo156396;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 624915 625580 . + . ID=Physo156397;biotype=protein_coding;external_name=C_scaffold_17000066;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 624915 625580 . + . ID=Physo156397;Parent=Physo156397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 624915 625292 . + 0 ID=Physo156397;Parent=Physo156397;rank=1 scaffold_17 . exon 624915 625292 . + . ID=Physo156397.1;Parent=Physo156397;constitutive=1;rank=1 scaffold_17 . CDS 625404 625580 . + 0 ID=Physo156397;Parent=Physo156397;rank=2 scaffold_17 . exon 625404 625580 . + . ID=Physo156397.2;Parent=Physo156397;constitutive=1;rank=2 scaffold_17 ensembl pseudogene 631443 634667 . + . ID=Physo131831;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_170173;logic_name=jgi_physo1_1 scaffold_17 ensembl pseudogene 631443 634667 . + . ID=Physo131831;Parent=Physo131831;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_17 . exon 631443 634667 . + . ID=Physo131831.1;Parent=Physo131831;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 . biological_region 640599 640601 0.999 - . logic_name=eponine scaffold_17 . biological_region 641101 641103 0.999 - . logic_name=eponine scaffold_17 . biological_region 641733 641738 0.999 - . logic_name=eponine scaffold_17 . biological_region 641762 641770 0.999 - . logic_name=eponine scaffold_17 . biological_region 641792 641797 0.999 - . logic_name=eponine scaffold_17 . biological_region 641820 641823 0.999 + . logic_name=eponine scaffold_17 . biological_region 646492 646494 0.999 - . logic_name=eponine scaffold_17 ensembl snRNA_gene 640265 640399 . - . ID=EPrPSOG00000000231;biotype=snRNA;description=U11 spliceosomal RNA [Source:RFAM%3BAcc:RF00548];external_name=U11;logic_name=ncrna_eg scaffold_17 ensembl snRNA 640265 640399 . - . ID=EPrPSOT00000000231;Parent=EPrPSOG00000000231;biotype=snRNA;logic_name=ncrna_eg scaffold_17 . exon 640265 640399 . - . ID=EPrPSOE00000000231;Parent=EPrPSOT00000000231;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 638302 639423 . + . ID=Physo131832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170174;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 638302 639423 . + . ID=Physo131832;Parent=Physo131832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 638302 638322 . + . ID=Physo131832.1;Parent=Physo131832;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 . exon 638464 639423 . + . ID=Physo131832.2;Parent=Physo131832;constitutive=1;ensembl_phase=-1;rank=2 scaffold_17 . CDS 638935 639423 . + 0 ID=Physo131832;Parent=Physo131832;rank=1 scaffold_17 ensembl protein_coding_gene 639621 644271 . + . ID=Physo131833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170175;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 639621 644271 . + . ID=Physo131833;Parent=Physo131833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 639621 639980 . + 0 ID=Physo131833;Parent=Physo131833;rank=1 scaffold_17 . exon 639621 639980 . + . ID=Physo131833.1;Parent=Physo131833;constitutive=1;rank=1 scaffold_17 . CDS 640061 640239 . + 0 ID=Physo131833;Parent=Physo131833;rank=2 scaffold_17 . exon 640061 640239 . + . ID=Physo131833.2;Parent=Physo131833;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 640430 640454 . + 0 ID=Physo131833;Parent=Physo131833;rank=3 scaffold_17 . exon 640430 640454 . + . ID=Physo131833.3;Parent=Physo131833;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 640814 640880 . + 0 ID=Physo131833;Parent=Physo131833;rank=4 scaffold_17 . exon 640814 640880 . + . ID=Physo131833.4;Parent=Physo131833;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_17 . CDS 640949 641035 . + 0 ID=Physo131833;Parent=Physo131833;rank=5 scaffold_17 . exon 640949 641035 . + . ID=Physo131833.5;Parent=Physo131833;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_17 . CDS 641538 641845 . + 0 ID=Physo131833;Parent=Physo131833;rank=6 scaffold_17 . exon 641538 641845 . + . ID=Physo131833.6;Parent=Physo131833;constitutive=1;ensembl_phase=1;rank=6 scaffold_17 . CDS 641928 642089 . + 0 ID=Physo131833;Parent=Physo131833;rank=7 scaffold_17 . exon 641928 642089 . + . ID=Physo131833.7;Parent=Physo131833;constitutive=1;rank=7 scaffold_17 . CDS 642190 644271 . + 0 ID=Physo131833;Parent=Physo131833;rank=8 scaffold_17 . exon 642190 644271 . + . ID=Physo131833.8;Parent=Physo131833;constitutive=1;rank=8 scaffold_17 ensembl protein_coding_gene 644716 645594 . - . ID=Physo131834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170176;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 644716 645594 . - . ID=Physo131834;Parent=Physo131834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 644716 645594 . - 0 ID=Physo131834;Parent=Physo131834;rank=1 scaffold_17 . exon 644716 645594 . - . ID=Physo131834.1;Parent=Physo131834;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 645876 653876 . + . ID=Physo131835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170177;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 645876 653876 . + . ID=Physo131835;Parent=Physo131835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 645876 653876 . + 0 ID=Physo131835;Parent=Physo131835;rank=1 scaffold_17 . exon 645876 653876 . + . ID=Physo131835.1;Parent=Physo131835;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 653933 656852 . - . ID=Physo108589;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170013;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 653933 656852 . - . ID=Physo108589;Parent=Physo108589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 653933 656852 . - . ID=Physo108589.1;Parent=Physo108589;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_17 . CDS 653991 656852 . - 0 ID=Physo108589;Parent=Physo108589;rank=1 scaffold_17 . biological_region 658001 658001 0.999 + . logic_name=eponine scaffold_17 . biological_region 658039 658046 0.999 + . logic_name=eponine scaffold_17 . biological_region 658326 658330 0.999 - . logic_name=eponine scaffold_17 . biological_region 658385 658387 0.999 + . logic_name=eponine scaffold_17 . repeat_region 659531 659538 . ? . description=dust scaffold_17 . repeat_region 661059 661473 . ? . description=dust scaffold_17 . repeat_region 667057 667106 . ? . description=dust scaffold_17 ensembl tRNA_gene 660569 660640 . - . ID=EPrPSOG00000000093;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_17 ensembl transcript 660569 660640 . - . ID=EPrPSOT00000000093;Parent=EPrPSOG00000000093;biotype=tRNA;logic_name=ncrna_eg scaffold_17 . exon 660569 660640 . - . ID=EPrPSOE00000000093;Parent=EPrPSOT00000000093;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 665625 665900 . + . ID=Physo113931;biotype=protein_coding;external_name=estExt_Genewise1.C_170056;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 665625 665900 . + . ID=Physo113931;Parent=Physo113931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 665625 665900 . + . ID=Physo113931.1;Parent=Physo113931;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 665628 665900 . + 0 ID=Physo113931;Parent=Physo113931;rank=1 scaffold_17 ensembl protein_coding_gene 658781 659215 . + . ID=Physo131837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170179;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 658781 659215 . + . ID=Physo131837;Parent=Physo131837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 658781 659215 . + 0 ID=Physo131837;Parent=Physo131837;rank=1 scaffold_17 . exon 658781 659215 . + . ID=Physo131837.1;Parent=Physo131837;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 659829 660260 . + . ID=Physo131838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170180;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 659829 660260 . + . ID=Physo131838;Parent=Physo131838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 659829 660260 . + 0 ID=Physo131838;Parent=Physo131838;rank=1 scaffold_17 . exon 659829 660260 . + . ID=Physo131838.1;Parent=Physo131838;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 662225 664142 . + . ID=Physo131839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170181;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 662225 664142 . + . ID=Physo131839;Parent=Physo131839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 662225 664025 . + 0 ID=Physo131839;Parent=Physo131839;rank=1 scaffold_17 . exon 662225 664025 . + . ID=Physo131839.1;Parent=Physo131839;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 664102 664142 . + 0 ID=Physo131839;Parent=Physo131839;rank=2 scaffold_17 . exon 664102 664142 . + . ID=Physo131839.2;Parent=Physo131839;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 ensembl protein_coding_gene 667004 668646 . - . ID=Physo131840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170182;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 667004 668646 . - . ID=Physo131840;Parent=Physo131840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 667004 667017 . - 0 ID=Physo131840;Parent=Physo131840;rank=4 scaffold_17 . exon 667004 667017 . - . ID=Physo131840.4;Parent=Physo131840;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 667143 667876 . - 0 ID=Physo131840;Parent=Physo131840;rank=3 scaffold_17 . exon 667143 667876 . - . ID=Physo131840.3;Parent=Physo131840;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 668217 668412 . - 0 ID=Physo131840;Parent=Physo131840;rank=2 scaffold_17 . CDS 668442 668646 . - 0 ID=Physo131840;Parent=Physo131840;rank=1 scaffold_17 . repeat_region 668357 668420 . ? . description=trf scaffold_17 . repeat_region 669797 669872 . ? . description=trf scaffold_17 . repeat_region 673389 673457 . ? . description=trf scaffold_17 . repeat_region 673413 673507 . ? . description=trf scaffold_17 . repeat_region 673414 673537 . ? . description=trf scaffold_17 . repeat_region 674052 674100 . ? . description=trf scaffold_17 . repeat_region 675278 675324 . ? . description=trf scaffold_17 . repeat_region 675283 675332 . ? . description=trf scaffold_17 . repeat_region 676934 676976 . ? . description=trf scaffold_17 . exon 668217 668412 . - . ID=Physo131840.2;Parent=Physo131840;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_17 . exon 668442 668646 . - . ID=Physo131840.1;Parent=Physo131840;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . repeat_region 679656 679705 . ? . description=dust scaffold_17 . biological_region 680689 680690 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 683374 684015 . + . ID=Physo131841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170183;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 683374 684015 . + . ID=Physo131841;Parent=Physo131841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 683374 683587 . + 0 ID=Physo131841;Parent=Physo131841;rank=1 scaffold_17 . exon 683374 683587 . + . ID=Physo131841.1;Parent=Physo131841;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 683720 684015 . + 0 ID=Physo131841;Parent=Physo131841;rank=2 scaffold_17 . exon 683720 684015 . + . ID=Physo131841.2;Parent=Physo131841;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . repeat_region 687537 687556 . ? . description=trf scaffold_17 . repeat_region 689274 689350 . ? . description=trf scaffold_17 . repeat_region 690681 690758 . ? . description=trf scaffold_17 . repeat_region 690885 690961 . ? . description=trf scaffold_17 . repeat_region 692224 692254 . ? . description=trf scaffold_17 ensembl protein_coding_gene 692982 693413 . + . ID=Physo131842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170184;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 692982 693413 . + . ID=Physo131842;Parent=Physo131842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 692982 693413 . + 0 ID=Physo131842;Parent=Physo131842;rank=1 scaffold_17 . exon 692982 693413 . + . ID=Physo131842.1;Parent=Physo131842;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 694614 696909 . + . ID=Physo131843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170185;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 694614 696909 . + . ID=Physo131843;Parent=Physo131843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 694614 695519 . + . ID=Physo131843.1;Parent=Physo131843;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 694634 695519 . + 0 ID=Physo131843;Parent=Physo131843;rank=1 scaffold_17 . CDS 695572 696186 . + 0 ID=Physo131843;Parent=Physo131843;rank=2 scaffold_17 . exon 695572 696186 . + . ID=Physo131843.2;Parent=Physo131843;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 696272 696909 . + 0 ID=Physo131843;Parent=Physo131843;rank=3 scaffold_17 . exon 696272 696909 . + . ID=Physo131843.3;Parent=Physo131843;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . repeat_region 706019 716535 . ? . description=dust scaffold_17 ensembl tRNA_gene 699335 699401 . - . ID=EPrPSOG00000000228;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_17 ensembl transcript 699335 699401 . - . ID=EPrPSOT00000000228;Parent=EPrPSOG00000000228;biotype=tRNA;logic_name=ncrna_eg scaffold_17 . exon 699335 699401 . - . ID=EPrPSOE00000000228;Parent=EPrPSOT00000000228;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 704446 704721 . + . ID=Physo113937;biotype=protein_coding;external_name=estExt_Genewise1.C_170062;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 704446 704721 . + . ID=Physo113937;Parent=Physo113937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 704446 704721 . + . ID=Physo113937.1;Parent=Physo113937;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 704449 704721 . + 0 ID=Physo113937;Parent=Physo113937;rank=1 scaffold_17 ensembl protein_coding_gene 697548 699026 . + . ID=Physo131844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170186;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 697548 699026 . + . ID=Physo131844;Parent=Physo131844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 697548 697922 . + 0 ID=Physo131844;Parent=Physo131844;rank=1 scaffold_17 . exon 697548 697922 . + . ID=Physo131844.1;Parent=Physo131844;constitutive=1;rank=1 scaffold_17 . CDS 698043 699026 . + 0 ID=Physo131844;Parent=Physo131844;rank=2 scaffold_17 . exon 698043 699026 . + . ID=Physo131844.2;Parent=Physo131844;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 701052 702969 . + . ID=Physo131845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170187;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 701052 702969 . + . ID=Physo131845;Parent=Physo131845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 701052 702852 . + 0 ID=Physo131845;Parent=Physo131845;rank=1 scaffold_17 . exon 701052 702852 . + . ID=Physo131845.1;Parent=Physo131845;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 702929 702969 . + 0 ID=Physo131845;Parent=Physo131845;rank=2 scaffold_17 . exon 702929 702969 . + . ID=Physo131845.2;Parent=Physo131845;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . repeat_region 716848 716890 . ? . description=trf scaffold_17 . biological_region 717002 717003 0.999 - . logic_name=eponine scaffold_17 . repeat_region 726845 726852 . ? . description=dust scaffold_17 ensembl protein_coding_gene 719690 720331 . + . ID=Physo131846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170188;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 719690 720331 . + . ID=Physo131846;Parent=Physo131846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 719690 719903 . + 0 ID=Physo131846;Parent=Physo131846;rank=1 scaffold_17 . exon 719690 719903 . + . ID=Physo131846.1;Parent=Physo131846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 720036 720331 . + 0 ID=Physo131846;Parent=Physo131846;rank=2 scaffold_17 . exon 720036 720331 . + . ID=Physo131846.2;Parent=Physo131846;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 ensembl protein_coding_gene 724175 724606 . - . ID=Physo131847;biotype=protein_coding;description=PsAvh192a1PsAvh192a2PsAvh192b2 [Source:UniProtKB/TrEMBL%3BAcc:E0W4U0];external_name=estExt_fgenesh1_pg.C_170189;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 724175 724606 . - . ID=Physo131847;Parent=Physo131847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 724175 724606 . - 0 ID=Physo131847;Parent=Physo131847;rank=1 scaffold_17 . exon 724175 724606 . - . ID=Physo131847.1;Parent=Physo131847;constitutive=1;rank=1 scaffold_17 . biological_region 728254 728258 0.999 - . logic_name=eponine scaffold_17 . biological_region 728276 728280 0.999 - . logic_name=eponine scaffold_17 . biological_region 731039 731043 0.999 - . logic_name=eponine scaffold_17 . biological_region 731098 731100 0.999 + . logic_name=eponine scaffold_17 ensembl tRNA_gene 733281 733342 . - . ID=EPrPSOG00000000279;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_17 ensembl transcript 733281 733342 . - . ID=EPrPSOT00000000279;Parent=EPrPSOG00000000279;biotype=tRNA;logic_name=ncrna_eg scaffold_17 . exon 733281 733342 . - . ID=EPrPSOE00000000279;Parent=EPrPSOT00000000279;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 728556 730851 . + . ID=Physo131848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170190;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 728556 730851 . + . ID=Physo131848;Parent=Physo131848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 728556 729461 . + . ID=Physo131848.1;Parent=Physo131848;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 728576 729461 . + 0 ID=Physo131848;Parent=Physo131848;rank=1 scaffold_17 . CDS 729514 730128 . + 0 ID=Physo131848;Parent=Physo131848;rank=2 scaffold_17 . exon 729514 730128 . + . ID=Physo131848.2;Parent=Physo131848;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 730214 730851 . + 0 ID=Physo131848;Parent=Physo131848;rank=3 scaffold_17 . exon 730214 730851 . + . ID=Physo131848.3;Parent=Physo131848;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 731494 732972 . + . ID=Physo131849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170191;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 731494 732972 . + . ID=Physo131849;Parent=Physo131849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 731494 731868 . + 0 ID=Physo131849;Parent=Physo131849;rank=1 scaffold_17 . exon 731494 731868 . + . ID=Physo131849.1;Parent=Physo131849;constitutive=1;rank=1 scaffold_17 . CDS 731989 732972 . + 0 ID=Physo131849;Parent=Physo131849;rank=2 scaffold_17 . exon 731989 732972 . + . ID=Physo131849.2;Parent=Physo131849;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 734993 736910 . + . ID=Physo131850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170192;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 734993 736910 . + . ID=Physo131850;Parent=Physo131850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 734993 736793 . + 0 ID=Physo131850;Parent=Physo131850;rank=1 scaffold_17 . exon 734993 736793 . + . ID=Physo131850.1;Parent=Physo131850;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 736870 736910 . + 0 ID=Physo131850;Parent=Physo131850;rank=2 scaffold_17 . exon 736870 736910 . + . ID=Physo131850.2;Parent=Physo131850;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . repeat_region 739884 740887 . ? . description=dust scaffold_17 . repeat_region 741991 742003 . ? . description=dust scaffold_17 . repeat_region 742262 742342 . ? . description=trf scaffold_17 . repeat_region 742263 742338 . ? . description=trf scaffold_17 . repeat_region 744837 744844 . ? . description=dust scaffold_17 . repeat_region 745725 745734 . ? . description=dust scaffold_17 . repeat_region 745853 745921 . ? . description=trf scaffold_17 . repeat_region 745877 745971 . ? . description=trf scaffold_17 . repeat_region 745877 746001 . ? . description=trf scaffold_17 ensembl protein_coding_gene 738390 738665 . + . ID=Physo113943;biotype=protein_coding;external_name=estExt_Genewise1.C_170068;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 738390 738665 . + . ID=Physo113943;Parent=Physo113943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 738390 738665 . + . ID=Physo113943.1;Parent=Physo113943;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 738393 738665 . + 0 ID=Physo113943;Parent=Physo113943;rank=1 scaffold_17 . biological_region 749423 749424 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 752110 752751 . + . ID=Physo131851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170193;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 752110 752751 . + . ID=Physo131851;Parent=Physo131851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 752110 752323 . + 0 ID=Physo131851;Parent=Physo131851;rank=1 scaffold_17 . exon 752110 752323 . + . ID=Physo131851.1;Parent=Physo131851;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 . CDS 752456 752751 . + 0 ID=Physo131851;Parent=Physo131851;rank=2 scaffold_17 . exon 752456 752751 . + . ID=Physo131851.2;Parent=Physo131851;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 ensembl protein_coding_gene 756490 757039 . - . ID=Physo131852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170194;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 756490 757039 . - . ID=Physo131852;Parent=Physo131852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 756490 756523 . - 0 ID=Physo131852;Parent=Physo131852;rank=2 scaffold_17 . exon 756490 756523 . - . ID=Physo131852.2;Parent=Physo131852;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 756675 757039 . - 0 ID=Physo131852;Parent=Physo131852;rank=1 scaffold_17 . exon 756675 757039 . - . ID=Physo131852.1;Parent=Physo131852;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . repeat_region 758105 758112 . ? . description=dust scaffold_17 . repeat_region 758818 758826 . ? . description=dust scaffold_17 . repeat_region 759864 759889 . ? . description=dust scaffold_17 . repeat_region 763575 763673 . ? . description=trf scaffold_17 . repeat_region 763587 763682 . ? . description=dust scaffold_17 . repeat_region 763954 763981 . ? . description=dust scaffold_17 . repeat_region 764707 764770 . ? . description=dust scaffold_17 . repeat_region 764708 764758 . ? . description=trf scaffold_17 ensembl protein_coding_gene 765080 765957 . - . ID=Physo131853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170195;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 765080 765957 . - . ID=Physo131853;Parent=Physo131853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 765080 765665 . - 0 ID=Physo131853;Parent=Physo131853;rank=2 scaffold_17 . exon 765080 765665 . - . ID=Physo131853.2;Parent=Physo131853;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 765737 765957 . - 0 ID=Physo131853;Parent=Physo131853;rank=1 scaffold_17 . exon 765737 765957 . - . ID=Physo131853.1;Parent=Physo131853;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 766553 769069 . + . ID=Physo131854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170196;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 766553 769069 . + . ID=Physo131854;Parent=Physo131854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 766553 769069 . + 0 ID=Physo131854;Parent=Physo131854;rank=1 scaffold_17 . exon 766553 769069 . + . ID=Physo131854.1;Parent=Physo131854;constitutive=1;rank=1 scaffold_17 . biological_region 771210 771214 0.999 - . logic_name=eponine scaffold_17 . biological_region 771358 771358 0.999 + . logic_name=eponine scaffold_17 . biological_region 771463 771467 0.999 - . logic_name=eponine scaffold_17 . biological_region 771863 771866 0.999 + . logic_name=eponine scaffold_17 . biological_region 771894 771895 0.999 - . logic_name=eponine scaffold_17 . biological_region 771918 771920 0.999 - . logic_name=eponine scaffold_17 . biological_region 772065 772065 0.999 - . logic_name=eponine scaffold_17 . biological_region 773365 773367 0.999 + . logic_name=eponine scaffold_17 . biological_region 773454 773454 0.999 + . logic_name=eponine scaffold_17 . biological_region 773457 773464 0.999 - . logic_name=eponine scaffold_17 . biological_region 776024 776027 0.999 + . logic_name=eponine scaffold_17 . biological_region 776422 776426 0.999 + . logic_name=eponine scaffold_17 . biological_region 776779 776781 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 771671 773458 . - . ID=Physo113945;biotype=protein_coding;external_name=estExt_Genewise1.C_170070;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 771671 773458 . - . ID=Physo113945;Parent=Physo113945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 771671 772168 . - 0 ID=Physo113945;Parent=Physo113945;rank=2 scaffold_17 . exon 771671 772168 . - . ID=Physo113945.2;Parent=Physo113945;constitutive=1;rank=2 scaffold_17 . CDS 772235 773365 . - 0 ID=Physo113945;Parent=Physo113945;rank=1 scaffold_17 . exon 772235 773458 . - . ID=Physo113945.1;Parent=Physo113945;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 769117 771441 . - . ID=Physo131855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170197;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 769117 771441 . - . ID=Physo131855;Parent=Physo131855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 769117 770687 . - 0 ID=Physo131855;Parent=Physo131855;rank=2 scaffold_17 . exon 769117 770687 . - . ID=Physo131855.2;Parent=Physo131855;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 770766 771441 . - 0 ID=Physo131855;Parent=Physo131855;rank=1 scaffold_17 . exon 770766 771441 . - . ID=Physo131855.1;Parent=Physo131855;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 776299 779658 . - . ID=Physo131857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170199;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 776299 779658 . - . ID=Physo131857;Parent=Physo131857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 776299 779658 . - 0 ID=Physo131857;Parent=Physo131857;rank=1 scaffold_17 . exon 776299 779658 . - . ID=Physo131857.1;Parent=Physo131857;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 783762 785927 . + . ID=Physo108590;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170014;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 783762 785927 . + . ID=Physo108590;Parent=Physo108590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 783762 785927 . + . ID=Physo108590.1;Parent=Physo108590;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 783771 785927 . + 0 ID=Physo108590;Parent=Physo108590;rank=1 scaffold_17 ensembl protein_coding_gene 781865 782665 . + . ID=Physo131858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170200;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 781865 782665 . + . ID=Physo131858;Parent=Physo131858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 781865 782665 . + 0 ID=Physo131858;Parent=Physo131858;rank=1 scaffold_17 . exon 781865 782665 . + . ID=Physo131858.1;Parent=Physo131858;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 785965 787508 . - . ID=Physo131860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170202;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 785965 787508 . - . ID=Physo131860;Parent=Physo131860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 785965 787508 . - . ID=Physo131860.1;Parent=Physo131860;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_17 . CDS 786033 787508 . - 0 ID=Physo131860;Parent=Physo131860;rank=1 scaffold_17 . biological_region 788860 788864 0.999 + . logic_name=eponine scaffold_17 . repeat_region 788897 788957 . ? . description=dust scaffold_17 . biological_region 788905 788911 0.999 - . logic_name=eponine scaffold_17 . biological_region 788967 788973 0.999 - . logic_name=eponine scaffold_17 . biological_region 789378 789378 0.999 - . logic_name=eponine scaffold_17 . biological_region 789415 789423 0.999 + . logic_name=eponine scaffold_17 . biological_region 789421 789426 0.999 - . logic_name=eponine scaffold_17 . biological_region 789494 789499 0.999 - . logic_name=eponine scaffold_17 . biological_region 789632 789632 0.999 + . logic_name=eponine scaffold_17 . repeat_region 789716 789948 . ? . description=trf scaffold_17 . repeat_region 789844 789885 . ? . description=trf scaffold_17 . repeat_region 789862 789933 . ? . description=trf scaffold_17 . repeat_region 789910 789948 . ? . description=trf scaffold_17 . biological_region 790419 790420 0.999 - . logic_name=eponine scaffold_17 . biological_region 791128 791133 0.999 - . logic_name=eponine scaffold_17 . repeat_region 792282 792318 . ? . description=trf scaffold_17 . biological_region 792749 792751 0.999 - . logic_name=eponine scaffold_17 . biological_region 793785 793788 0.999 + . logic_name=eponine scaffold_17 . biological_region 795045 795052 0.999 - . logic_name=eponine scaffold_17 . biological_region 795637 795642 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 794883 795927 . - . ID=Physo108591;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170015;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 794883 795927 . - . ID=Physo108591;Parent=Physo108591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 794883 795206 . - 0 ID=Physo108591;Parent=Physo108591;rank=5 scaffold_17 . exon 794883 795206 . - . ID=Physo108591.5;Parent=Physo108591;constitutive=1;rank=5 scaffold_17 . CDS 795280 795340 . - 0 ID=Physo108591;Parent=Physo108591;rank=4 scaffold_17 . exon 795280 795340 . - . ID=Physo108591.4;Parent=Physo108591;constitutive=1;ensembl_phase=2;rank=4 scaffold_17 . CDS 795422 795447 . - 0 ID=Physo108591;Parent=Physo108591;rank=3 scaffold_17 . exon 795422 795447 . - . ID=Physo108591.3;Parent=Physo108591;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 795534 795744 . - 0 ID=Physo108591;Parent=Physo108591;rank=2 scaffold_17 . exon 795534 795744 . - . ID=Physo108591.2;Parent=Physo108591;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 795827 795927 . - 0 ID=Physo108591;Parent=Physo108591;rank=1 scaffold_17 . exon 795827 795927 . - . ID=Physo108591.1;Parent=Physo108591;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 788849 791155 . + . ID=Physo131861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170203;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 788849 791155 . + . ID=Physo131861;Parent=Physo131861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 788849 790565 . + . ID=Physo131861.1;Parent=Physo131861;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 789014 790565 . + 0 ID=Physo131861;Parent=Physo131861;rank=1 scaffold_17 . CDS 790643 790790 . + 0 ID=Physo131861;Parent=Physo131861;rank=2 scaffold_17 . exon 790643 790790 . + . ID=Physo131861.2;Parent=Physo131861;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_17 . CDS 790870 791155 . + 0 ID=Physo131861;Parent=Physo131861;rank=3 scaffold_17 . exon 790870 791155 . + . ID=Physo131861.3;Parent=Physo131861;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 ensembl protein_coding_gene 793615 794532 . + . ID=Physo131862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170204;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 793615 794532 . + . ID=Physo131862;Parent=Physo131862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 793615 794532 . + 0 ID=Physo131862;Parent=Physo131862;rank=1 scaffold_17 . exon 793615 794532 . + . ID=Physo131862.1;Parent=Physo131862;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 796061 797594 . + . ID=Physo131864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170206;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 796061 797594 . + . ID=Physo131864;Parent=Physo131864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 796061 796119 . + 0 ID=Physo131864;Parent=Physo131864;rank=1 scaffold_17 . exon 796061 796119 . + . ID=Physo131864.1;Parent=Physo131864;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 796210 796378 . + 0 ID=Physo131864;Parent=Physo131864;rank=2 scaffold_17 . exon 796210 796378 . + . ID=Physo131864.2;Parent=Physo131864;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 796453 796544 . + 0 ID=Physo131864;Parent=Physo131864;rank=3 scaffold_17 . exon 796453 796544 . + . ID=Physo131864.3;Parent=Physo131864;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_17 . CDS 796611 797553 . + 0 ID=Physo131864;Parent=Physo131864;rank=4 scaffold_17 . exon 796611 797594 . + . ID=Physo131864.4;Parent=Physo131864;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_17 ensembl protein_coding_gene 797602 798352 . - . ID=Physo131865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170207;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 797602 798352 . - . ID=Physo131865;Parent=Physo131865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 797602 798352 . - . ID=Physo131865.1;Parent=Physo131865;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 797813 798319 . - 0 ID=Physo131865;Parent=Physo131865;rank=1 scaffold_17 ensembl protein_coding_gene 799284 800708 . + . ID=Physo131866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170208;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 799284 800708 . + . ID=Physo131866;Parent=Physo131866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 799284 800708 . + 0 ID=Physo131866;Parent=Physo131866;rank=1 scaffold_17 . exon 799284 800708 . + . ID=Physo131866.1;Parent=Physo131866;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 800940 803156 . - . ID=Physo131867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170209;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 800940 803156 . - . ID=Physo131867;Parent=Physo131867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 800940 803156 . - 0 ID=Physo131867;Parent=Physo131867;rank=1 scaffold_17 . exon 800940 803156 . - . ID=Physo131867.1;Parent=Physo131867;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 804765 806282 . + . ID=Physo131868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170210;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 804765 806282 . + . ID=Physo131868;Parent=Physo131868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 804765 805967 . + 0 ID=Physo131868;Parent=Physo131868;rank=1 scaffold_17 . exon 804765 805967 . + . ID=Physo131868.1;Parent=Physo131868;constitutive=1;rank=1 scaffold_17 . CDS 806070 806282 . + 0 ID=Physo131868;Parent=Physo131868;rank=2 scaffold_17 . exon 806070 806282 . + . ID=Physo131868.2;Parent=Physo131868;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 806429 810313 . - . ID=Physo131869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170211;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 806429 810313 . - . ID=Physo131869;Parent=Physo131869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 806429 809950 . - 0 ID=Physo131869;Parent=Physo131869;rank=2 scaffold_17 . exon 806429 809950 . - . ID=Physo131869.2;Parent=Physo131869;constitutive=1;rank=2 scaffold_17 . CDS 810062 810313 . - 0 ID=Physo131869;Parent=Physo131869;rank=1 scaffold_17 . biological_region 808297 808299 0.999 - . logic_name=eponine scaffold_17 . biological_region 809405 809409 0.999 + . logic_name=eponine scaffold_17 . biological_region 809690 809692 0.999 + . logic_name=eponine scaffold_17 . biological_region 809715 809723 0.999 + . logic_name=eponine scaffold_17 . biological_region 809759 809761 0.999 + . logic_name=eponine scaffold_17 . biological_region 809778 809780 0.999 + . logic_name=eponine scaffold_17 . biological_region 809782 809785 0.999 - . logic_name=eponine scaffold_17 . biological_region 809810 809813 0.999 - . logic_name=eponine scaffold_17 . biological_region 809829 809836 0.999 - . logic_name=eponine scaffold_17 . biological_region 809892 809900 0.999 - . logic_name=eponine scaffold_17 . biological_region 809980 809982 0.999 + . logic_name=eponine scaffold_17 . biological_region 810594 810597 0.999 - . logic_name=eponine scaffold_17 . biological_region 810651 810653 0.999 + . logic_name=eponine scaffold_17 . repeat_region 810882 810918 . ? . description=trf scaffold_17 . exon 810062 810313 . - . ID=Physo131869.1;Parent=Physo131869;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 811351 813135 . - . ID=Physo131870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170212;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 811351 813135 . - . ID=Physo131870;Parent=Physo131870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 811351 813135 . - 0 ID=Physo131870;Parent=Physo131870;rank=1 scaffold_17 . exon 811351 813135 . - . ID=Physo131870.1;Parent=Physo131870;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 819879 828244 . - . ID=Physo131871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170213;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 819879 828244 . - . ID=Physo131871;Parent=Physo131871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 819879 820226 . - 0 ID=Physo131871;Parent=Physo131871;rank=5 scaffold_17 . exon 819879 820226 . - . ID=Physo131871.5;Parent=Physo131871;constitutive=1;rank=5 scaffold_17 . CDS 820796 823819 . - 0 ID=Physo131871;Parent=Physo131871;rank=4 scaffold_17 . exon 820796 823819 . - . ID=Physo131871.4;Parent=Physo131871;constitutive=1;rank=4 scaffold_17 . CDS 823886 824041 . - 0 ID=Physo131871;Parent=Physo131871;rank=3 scaffold_17 . exon 823886 824041 . - . ID=Physo131871.3;Parent=Physo131871;constitutive=1;rank=3 scaffold_17 . CDS 824114 824314 . - 0 ID=Physo131871;Parent=Physo131871;rank=2 scaffold_17 . exon 824114 824314 . - . ID=Physo131871.2;Parent=Physo131871;constitutive=1;rank=2 scaffold_17 . CDS 824384 828244 . - 0 ID=Physo131871;Parent=Physo131871;rank=1 scaffold_17 . exon 824384 828244 . - . ID=Physo131871.1;Parent=Physo131871;constitutive=1;rank=1 scaffold_17 . biological_region 827105 827106 0.999 + . logic_name=eponine scaffold_17 . biological_region 827205 827209 0.999 - . logic_name=eponine scaffold_17 . biological_region 827590 827590 0.999 + . logic_name=eponine scaffold_17 . biological_region 827673 827675 0.999 - . logic_name=eponine scaffold_17 . biological_region 828668 828670 0.999 + . logic_name=eponine scaffold_17 . biological_region 830133 830138 0.999 + . logic_name=eponine scaffold_17 . biological_region 830335 830336 0.999 - . logic_name=eponine scaffold_17 . biological_region 831817 831820 0.999 + . logic_name=eponine scaffold_17 . biological_region 831878 831884 0.999 + . logic_name=eponine scaffold_17 . repeat_region 832212 832220 . ? . description=dust scaffold_17 . repeat_region 833116 833154 . ? . description=trf scaffold_17 . repeat_region 834323 834355 . ? . description=trf scaffold_17 . repeat_region 834530 834538 . ? . description=dust scaffold_17 . biological_region 835321 835331 0.999 + . logic_name=eponine scaffold_17 . biological_region 835586 835587 0.999 - . logic_name=eponine scaffold_17 . repeat_region 835617 835627 . ? . description=dust scaffold_17 . biological_region 836004 836006 0.999 + . logic_name=eponine scaffold_17 . biological_region 836031 836034 0.999 + . logic_name=eponine scaffold_17 . biological_region 836272 836274 0.999 - . logic_name=eponine scaffold_17 . biological_region 836327 836331 0.999 + . logic_name=eponine scaffold_17 . biological_region 836549 836550 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 828469 832281 . + . ID=Physo131872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170214;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 828469 832281 . + . ID=Physo131872;Parent=Physo131872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 828469 832203 . + 0 ID=Physo131872;Parent=Physo131872;rank=1 scaffold_17 . exon 828469 832281 . + . ID=Physo131872.1;Parent=Physo131872;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_17 ensembl protein_coding_gene 835338 837751 . + . ID=Physo131873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170215;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 835338 837751 . + . ID=Physo131873;Parent=Physo131873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 835338 835606 . + 0 ID=Physo131873;Parent=Physo131873;rank=1 scaffold_17 . exon 835338 835606 . + . ID=Physo131873.1;Parent=Physo131873;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 835690 837751 . + 0 ID=Physo131873;Parent=Physo131873;rank=2 scaffold_17 . exon 835690 837751 . + . ID=Physo131873.2;Parent=Physo131873;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 ensembl protein_coding_gene 837949 838898 . - . ID=Physo131874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170216;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 837949 838898 . - . ID=Physo131874;Parent=Physo131874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 837949 838450 . - 0 ID=Physo131874;Parent=Physo131874;rank=3 scaffold_17 . exon 837949 838450 . - . ID=Physo131874.3;Parent=Physo131874;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 838519 838679 . - 0 ID=Physo131874;Parent=Physo131874;rank=2 scaffold_17 . exon 838519 838679 . - . ID=Physo131874.2;Parent=Physo131874;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_17 . CDS 838794 838898 . - 0 ID=Physo131874;Parent=Physo131874;rank=1 scaffold_17 . exon 838794 838898 . - . ID=Physo131874.1;Parent=Physo131874;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 839097 844100 . + . ID=Physo131875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170217;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 839097 844100 . + . ID=Physo131875;Parent=Physo131875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 839097 840997 . + 0 ID=Physo131875;Parent=Physo131875;rank=1 scaffold_17 . exon 839097 840997 . + . ID=Physo131875.1;Parent=Physo131875;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 841356 842818 . + 0 ID=Physo131875;Parent=Physo131875;rank=2 scaffold_17 . exon 841356 842818 . + . ID=Physo131875.2;Parent=Physo131875;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 843085 844100 . + 0 ID=Physo131875;Parent=Physo131875;rank=3 scaffold_17 . exon 843085 844100 . + . ID=Physo131875.3;Parent=Physo131875;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 ensembl protein_coding_gene 844300 845382 . + . ID=Physo131876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170218;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 844300 845382 . + . ID=Physo131876;Parent=Physo131876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 844300 845382 . + 0 ID=Physo131876;Parent=Physo131876;rank=1 scaffold_17 . exon 844300 845382 . + . ID=Physo131876.1;Parent=Physo131876;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 845525 846949 . + . ID=Physo131877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170219;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 845525 846949 . + . ID=Physo131877;Parent=Physo131877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 845525 846949 . + 0 ID=Physo131877;Parent=Physo131877;rank=1 scaffold_17 . exon 845525 846949 . + . ID=Physo131877.1;Parent=Physo131877;constitutive=1;rank=1 scaffold_17 . repeat_region 850345 850352 . ? . description=dust scaffold_17 . repeat_region 850398 850405 . ? . description=dust scaffold_17 . biological_region 850674 850676 0.999 - . logic_name=eponine scaffold_17 . repeat_region 851874 851881 . ? . description=dust scaffold_17 . biological_region 855353 855355 0.999 + . logic_name=eponine scaffold_17 . biological_region 855599 855602 0.999 - . logic_name=eponine scaffold_17 ensembl protein_coding_gene 847028 848415 . - . ID=Physo131878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170220;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 847028 848415 . - . ID=Physo131878;Parent=Physo131878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 847028 848138 . - 0 ID=Physo131878;Parent=Physo131878;rank=2 scaffold_17 . exon 847028 848138 . - . ID=Physo131878.2;Parent=Physo131878;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 848207 848415 . - 0 ID=Physo131878;Parent=Physo131878;rank=1 scaffold_17 . exon 848207 848415 . - . ID=Physo131878.1;Parent=Physo131878;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 848872 850016 . - . ID=Physo131879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170221;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 848872 850016 . - . ID=Physo131879;Parent=Physo131879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 848872 849757 . - 0 ID=Physo131879;Parent=Physo131879;rank=2 scaffold_17 . exon 848872 849757 . - . ID=Physo131879.2;Parent=Physo131879;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 849811 850016 . - 0 ID=Physo131879;Parent=Physo131879;rank=1 scaffold_17 . exon 849811 850016 . - . ID=Physo131879.1;Parent=Physo131879;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 850564 851694 . - . ID=Physo131880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170222;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 850564 851694 . - . ID=Physo131880;Parent=Physo131880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 850564 850835 . - 0 ID=Physo131880;Parent=Physo131880;rank=4 scaffold_17 . exon 850564 850835 . - . ID=Physo131880.4;Parent=Physo131880;constitutive=1;ensembl_phase=1;rank=4 scaffold_17 . CDS 850868 851368 . - 0 ID=Physo131880;Parent=Physo131880;rank=3 scaffold_17 . exon 850868 851368 . - . ID=Physo131880.3;Parent=Physo131880;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 851407 851420 . - 0 ID=Physo131880;Parent=Physo131880;rank=2 scaffold_17 . exon 851407 851420 . - . ID=Physo131880.2;Parent=Physo131880;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 851489 851694 . - 0 ID=Physo131880;Parent=Physo131880;rank=1 scaffold_17 . exon 851489 851694 . - . ID=Physo131880.1;Parent=Physo131880;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 ensembl protein_coding_gene 852136 853746 . - . ID=Physo131881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170223;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 852136 853746 . - . ID=Physo131881;Parent=Physo131881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 852136 853746 . - 0 ID=Physo131881;Parent=Physo131881;rank=1 scaffold_17 . exon 852136 853746 . - . ID=Physo131881.1;Parent=Physo131881;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 854212 855773 . + . ID=Physo131882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170224;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 854212 855773 . + . ID=Physo131882;Parent=Physo131882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 854212 855122 . + 0 ID=Physo131882;Parent=Physo131882;rank=1 scaffold_17 . exon 854212 855122 . + . ID=Physo131882.1;Parent=Physo131882;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 855203 855266 . + 0 ID=Physo131882;Parent=Physo131882;rank=2 scaffold_17 . exon 855203 855266 . + . ID=Physo131882.2;Parent=Physo131882;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . CDS 855333 855773 . + 0 ID=Physo131882;Parent=Physo131882;rank=3 scaffold_17 . exon 855333 855773 . + . ID=Physo131882.3;Parent=Physo131882;constitutive=1;rank=3 scaffold_17 ensembl protein_coding_gene 856261 857415 . + . ID=Physo131883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170225;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 856261 857415 . + . ID=Physo131883;Parent=Physo131883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 856261 856472 . + 0 ID=Physo131883;Parent=Physo131883;rank=1 scaffold_17 . exon 856261 856472 . + . ID=Physo131883.1;Parent=Physo131883;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 856542 857415 . + 0 ID=Physo131883;Parent=Physo131883;rank=2 scaffold_17 . exon 856542 857415 . + . ID=Physo131883.2;Parent=Physo131883;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 ensembl protein_coding_gene 863543 866161 . - . ID=Physo131887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170229;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 863543 866161 . - . ID=Physo131887;Parent=Physo131887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 863543 866161 . - 0 ID=Physo131887;Parent=Physo131887;rank=1 scaffold_17 . exon 863543 866161 . - . ID=Physo131887.1;Parent=Physo131887;constitutive=1;rank=1 scaffold_17 ensembl protein_coding_gene 859019 863292 . + . ID=Physo156401;biotype=protein_coding;external_name=C_scaffold_17000070;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 859019 863292 . + . ID=Physo156401;Parent=Physo156401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 859019 859263 . + 0 ID=Physo156401;Parent=Physo156401;rank=1 scaffold_17 . exon 859019 859263 . + . ID=Physo156401.1;Parent=Physo156401;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 859553 859618 . + 0 ID=Physo156401;Parent=Physo156401;rank=2 scaffold_17 . exon 859553 859618 . + . ID=Physo156401.2;Parent=Physo156401;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_17 . CDS 859959 860451 . + 0 ID=Physo156401;Parent=Physo156401;rank=3 scaffold_17 . exon 859959 860451 . + . ID=Physo156401.3;Parent=Physo156401;constitutive=1;ensembl_phase=2;rank=3 scaffold_17 . CDS 860491 860592 . + 0 ID=Physo156401;Parent=Physo156401;rank=4 scaffold_17 . exon 860491 860592 . + . ID=Physo156401.4;Parent=Physo156401;constitutive=1;rank=4 scaffold_17 . CDS 860654 860844 . + 0 ID=Physo156401;Parent=Physo156401;rank=5 scaffold_17 . exon 860654 860844 . + . ID=Physo156401.5;Parent=Physo156401;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_17 . CDS 860913 861226 . + 0 ID=Physo156401;Parent=Physo156401;rank=6 scaffold_17 . exon 860913 861226 . + . ID=Physo156401.6;Parent=Physo156401;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_17 . CDS 861377 861605 . + 0 ID=Physo156401;Parent=Physo156401;rank=7 scaffold_17 . exon 861377 861605 . + . ID=Physo156401.7;Parent=Physo156401;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_17 . CDS 861678 861746 . + 0 ID=Physo156401;Parent=Physo156401;rank=8 scaffold_17 . exon 861678 861746 . + . ID=Physo156401.8;Parent=Physo156401;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_17 . CDS 861820 862504 . + 0 ID=Physo156401;Parent=Physo156401;rank=9 scaffold_17 . exon 861820 862504 . + . ID=Physo156401.9;Parent=Physo156401;constitutive=1;ensembl_phase=2;rank=9 scaffold_17 . CDS 862628 862628 . + 0 ID=Physo156401;Parent=Physo156401;rank=10 scaffold_17 . exon 862628 862628 . + . ID=Physo156401.10;Parent=Physo156401;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_17 . CDS 862713 862851 . + 0 ID=Physo156401;Parent=Physo156401;rank=11 scaffold_17 . exon 862713 862851 . + . ID=Physo156401.11;Parent=Physo156401;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_17 . CDS 862941 863292 . + 0 ID=Physo156401;Parent=Physo156401;rank=12 scaffold_17 . exon 862941 863292 . + . ID=Physo156401.12;Parent=Physo156401;constitutive=1;ensembl_phase=2;rank=12 scaffold_17 . repeat_region 867239 867270 . ? . description=dust scaffold_17 . repeat_region 867241 867269 . ? . description=trf scaffold_17 . biological_region 868354 868358 0.999 - . logic_name=eponine scaffold_17 . biological_region 868889 868891 0.999 + . logic_name=eponine scaffold_17 . biological_region 868935 868939 0.999 + . logic_name=eponine scaffold_17 . biological_region 868973 868974 0.999 + . logic_name=eponine scaffold_17 . biological_region 868998 869006 0.999 + . logic_name=eponine scaffold_17 . biological_region 869036 869039 0.999 - . logic_name=eponine scaffold_17 . biological_region 869070 869071 0.999 - . logic_name=eponine scaffold_17 . biological_region 869110 869115 0.999 - . logic_name=eponine scaffold_17 . biological_region 869195 869196 0.999 - . logic_name=eponine scaffold_17 . biological_region 869275 869275 0.999 + . logic_name=eponine scaffold_17 . biological_region 869290 869295 0.999 - . logic_name=eponine scaffold_17 . biological_region 869347 869351 0.999 + . logic_name=eponine scaffold_17 . repeat_region 871943 881687 . ? . description=dust scaffold_17 ensembl protein_coding_gene 867215 871692 . + . ID=Physo131888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170230;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 867215 871692 . + . ID=Physo131888;Parent=Physo131888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 867215 867398 . + . ID=Physo131888.1;Parent=Physo131888;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 867345 867398 . + 0 ID=Physo131888;Parent=Physo131888;rank=1 scaffold_17 . CDS 867493 867673 . + 0 ID=Physo131888;Parent=Physo131888;rank=2 scaffold_17 . exon 867493 867673 . + . ID=Physo131888.2;Parent=Physo131888;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_17 . CDS 867758 867957 . + 0 ID=Physo131888;Parent=Physo131888;rank=3 scaffold_17 . exon 867758 867957 . + . ID=Physo131888.3;Parent=Physo131888;constitutive=1;ensembl_phase=1;rank=3 scaffold_17 . CDS 868040 868126 . + 0 ID=Physo131888;Parent=Physo131888;rank=4 scaffold_17 . exon 868040 868126 . + . ID=Physo131888.4;Parent=Physo131888;constitutive=1;rank=4 scaffold_17 . CDS 868211 868484 . + 0 ID=Physo131888;Parent=Physo131888;rank=5 scaffold_17 . exon 868211 868484 . + . ID=Physo131888.5;Parent=Physo131888;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_17 . CDS 868629 868689 . + 0 ID=Physo131888;Parent=Physo131888;rank=6 scaffold_17 . exon 868629 868689 . + . ID=Physo131888.6;Parent=Physo131888;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_17 . CDS 868911 869102 . + 0 ID=Physo131888;Parent=Physo131888;rank=7 scaffold_17 . exon 868911 869102 . + . ID=Physo131888.7;Parent=Physo131888;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_17 . CDS 869203 871562 . + 0 ID=Physo131888;Parent=Physo131888;rank=8 scaffold_17 . exon 869203 871562 . + . ID=Physo131888.8;Parent=Physo131888;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_17 . CDS 871655 871692 . + 0 ID=Physo131888;Parent=Physo131888;rank=9 scaffold_17 . exon 871655 871692 . + . ID=Physo131888.9;Parent=Physo131888;constitutive=1;ensembl_phase=1;rank=9 scaffold_17 ensembl protein_coding_gene 885423 886468 . + . ID=Physo108593;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_170017;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 885423 886468 . + . ID=Physo108593;Parent=Physo108593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . exon 885423 886399 . + . ID=Physo108593.1;Parent=Physo108593;constitutive=1;ensembl_phase=-1;rank=1 scaffold_17 . CDS 885470 886399 . + 0 ID=Physo108593;Parent=Physo108593;rank=1 scaffold_17 . CDS 886430 886468 . + 0 ID=Physo108593;Parent=Physo108593;rank=2 scaffold_17 . exon 886430 886468 . + . ID=Physo108593.2;Parent=Physo108593;constitutive=1;rank=2 scaffold_17 ensembl protein_coding_gene 882510 883420 . - . ID=Physo131889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170231;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 882510 883420 . - . ID=Physo131889;Parent=Physo131889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 882510 883009 . - 0 ID=Physo131889;Parent=Physo131889;rank=2 scaffold_17 . exon 882510 883009 . - . ID=Physo131889.2;Parent=Physo131889;constitutive=1;ensembl_phase=1;rank=2 scaffold_17 . CDS 883081 883420 . - 0 ID=Physo131889;Parent=Physo131889;rank=1 scaffold_17 . exon 883081 883420 . - . ID=Physo131889.1;Parent=Physo131889;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_17 ensembl protein_coding_gene 884082 885175 . + . ID=Physo131890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_170232;logic_name=jgi_physo1_1 scaffold_17 ensembl transcript 884082 885175 . + . ID=Physo131890;Parent=Physo131890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_17 . CDS 884082 884971 . + 0 ID=Physo131890;Parent=Physo131890;rank=1 scaffold_17 . exon 884082 884971 . + . ID=Physo131890.1;Parent=Physo131890;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_17 . CDS 885166 885175 . + 0 ID=Physo131890;Parent=Physo131890;rank=2 scaffold_17 . exon 885166 885175 . + . ID=Physo131890.2;Parent=Physo131890;constitutive=1;ensembl_phase=2;rank=2 scaffold_17 . repeat_region 887947 887955 . ? . description=dust scaffold_17 . biological_region 888850 888852 0.999 + . logic_name=eponine scaffold_17 . biological_region 890035 890038 0.999 - . logic_name=eponine scaffold_17 . biological_region 890406 890407 0.999 + . logic_name=eponine scaffold_17 . repeat_region 890550 890558 . ? . description=dust scaffold_17 . repeat_region 892464 892489 . ? . description=trf scaffold_17 . repeat_region 894598 894613 . ? . description=dust scaffold_17 . repeat_region 895291 895309 . ? . description=dust scaffold_17 . biological_region 896157 896158 0.999 - . logic_name=eponine scaffold_17 . biological_region 896247 896248 0.999 - . logic_name=eponine scaffold_17 . repeat_region 896257 896269 . ? . description=dust scaffold_17 . repeat_region 896321 896361 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_16 1 916955 scaffold_16 . biological_region 1034 1035 0.999 - . logic_name=eponine scaffold_16 . biological_region 2233 2234 0.999 + . logic_name=eponine scaffold_16 . biological_region 6660 6660 0.999 + . logic_name=eponine scaffold_16 . repeat_region 6782 6825 . ? . description=trf scaffold_16 . biological_region 7058 7059 0.999 + . logic_name=eponine scaffold_16 . biological_region 7426 7431 0.999 + . logic_name=eponine scaffold_16 . biological_region 8121 8130 0.999 - . logic_name=eponine scaffold_16 . repeat_region 8940 8949 . ? . description=dust scaffold_16 . biological_region 9174 9176 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 18 3762 . - . ID=Physo131457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160001;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 18 3762 . - . ID=Physo131457;Parent=Physo131457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 18 1785 . - . ID=Physo131457.3;Parent=Physo131457;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_16 . CDS 20 1785 . - 0 ID=Physo131457;Parent=Physo131457;rank=3 scaffold_16 . CDS 1819 3154 . - 0 ID=Physo131457;Parent=Physo131457;rank=2 scaffold_16 . exon 1819 3154 . - . ID=Physo131457.2;Parent=Physo131457;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 3175 3762 . - 0 ID=Physo131457;Parent=Physo131457;rank=1 scaffold_16 . exon 3175 3762 . - . ID=Physo131457.1;Parent=Physo131457;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 6346 7959 . - . ID=Physo131458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160002;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 6346 7959 . - . ID=Physo131458;Parent=Physo131458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 6346 7779 . - . ID=Physo131458.2;Parent=Physo131458;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_16 . CDS 6497 7779 . - 0 ID=Physo131458;Parent=Physo131458;rank=2 scaffold_16 . CDS 7812 7959 . - 0 ID=Physo131458;Parent=Physo131458;rank=1 scaffold_16 . exon 7812 7959 . - . ID=Physo131458.1;Parent=Physo131458;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 10843 11367 . + . ID=Physo131459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160003;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 10843 11367 . + . ID=Physo131459;Parent=Physo131459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 10843 11367 . + . ID=Physo131459.1;Parent=Physo131459;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 10844 11251 . + 0 ID=Physo131459;Parent=Physo131459;rank=1 scaffold_16 . repeat_region 20080 20113 . ? . description=trf scaffold_16 . biological_region 20473 20478 0.999 - . logic_name=eponine scaffold_16 . biological_region 20516 20522 0.999 - . logic_name=eponine scaffold_16 . biological_region 20528 20533 0.999 + . logic_name=eponine scaffold_16 . biological_region 20572 20578 0.999 + . logic_name=eponine scaffold_16 . biological_region 20574 20579 0.999 - . logic_name=eponine scaffold_16 . biological_region 20745 20753 0.999 - . logic_name=eponine scaffold_16 . biological_region 20772 20773 0.999 - . logic_name=eponine scaffold_16 . biological_region 21464 21468 0.999 - . logic_name=eponine scaffold_16 . biological_region 21938 21938 0.999 + . logic_name=eponine scaffold_16 . biological_region 22059 22061 0.999 - . logic_name=eponine scaffold_16 . biological_region 23131 23132 0.999 - . logic_name=eponine scaffold_16 . biological_region 23912 23913 0.999 - . logic_name=eponine scaffold_16 . biological_region 27790 27793 0.999 + . logic_name=eponine scaffold_16 . biological_region 27791 27793 0.999 - . logic_name=eponine scaffold_16 . biological_region 29359 29363 0.999 + . logic_name=eponine scaffold_16 . biological_region 29623 29629 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 20114 21479 . + . ID=Physo131461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160005;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 20114 21479 . + . ID=Physo131461;Parent=Physo131461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 20114 20663 . + 0 ID=Physo131461;Parent=Physo131461;rank=1 scaffold_16 . exon 20114 20663 . + . ID=Physo131461.1;Parent=Physo131461;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 20743 21479 . + 0 ID=Physo131461;Parent=Physo131461;rank=2 scaffold_16 . exon 20743 21479 . + . ID=Physo131461.2;Parent=Physo131461;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 21754 31019 . - . ID=Physo131462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160006;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 21754 31019 . - . ID=Physo131462;Parent=Physo131462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 21754 21852 . - 0 ID=Physo131462;Parent=Physo131462;rank=10 scaffold_16 . exon 21754 21852 . - . ID=Physo131462.10;Parent=Physo131462;constitutive=1;rank=10 scaffold_16 . CDS 21881 21915 . - 0 ID=Physo131462;Parent=Physo131462;rank=9 scaffold_16 . exon 21881 21915 . - . ID=Physo131462.9;Parent=Physo131462;constitutive=1;ensembl_phase=1;rank=9 scaffold_16 . CDS 22022 23357 . - 0 ID=Physo131462;Parent=Physo131462;rank=8 scaffold_16 . exon 22022 23357 . - . ID=Physo131462.8;Parent=Physo131462;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_16 . CDS 23411 24652 . - 0 ID=Physo131462;Parent=Physo131462;rank=7 scaffold_16 . exon 23411 24652 . - . ID=Physo131462.7;Parent=Physo131462;constitutive=1;rank=7 scaffold_16 . CDS 24737 25251 . - 0 ID=Physo131462;Parent=Physo131462;rank=6 scaffold_16 . exon 24737 25251 . - . ID=Physo131462.6;Parent=Physo131462;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 . CDS 25283 25368 . - 0 ID=Physo131462;Parent=Physo131462;rank=5 scaffold_16 . exon 25283 25368 . - . ID=Physo131462.5;Parent=Physo131462;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 25417 27577 . - 0 ID=Physo131462;Parent=Physo131462;rank=4 scaffold_16 . exon 25417 27577 . - . ID=Physo131462.4;Parent=Physo131462;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_16 . CDS 27609 28108 . - 0 ID=Physo131462;Parent=Physo131462;rank=3 scaffold_16 . exon 27609 28108 . - . ID=Physo131462.3;Parent=Physo131462;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 28139 29508 . - 0 ID=Physo131462;Parent=Physo131462;rank=2 scaffold_16 . exon 28139 29508 . - . ID=Physo131462.2;Parent=Physo131462;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 29580 31019 . - 0 ID=Physo131462;Parent=Physo131462;rank=1 scaffold_16 . exon 29580 31019 . - . ID=Physo131462.1;Parent=Physo131462;constitutive=1;rank=1 scaffold_16 . repeat_region 34960 35014 . ? . description=dust scaffold_16 . repeat_region 36870 36879 . ? . description=dust scaffold_16 . repeat_region 38875 38883 . ? . description=dust scaffold_16 ensembl protein_coding_gene 32570 34048 . + . ID=Physo108562;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160001;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 32570 34048 . + . ID=Physo108562;Parent=Physo108562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 32570 33367 . + 0 ID=Physo108562;Parent=Physo108562;rank=1 scaffold_16 . exon 32570 33367 . + . ID=Physo108562.1;Parent=Physo108562;constitutive=1;rank=1 scaffold_16 . CDS 33416 34045 . + 0 ID=Physo108562;Parent=Physo108562;rank=2 scaffold_16 . exon 33416 34048 . + . ID=Physo108562.2;Parent=Physo108562;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_16 ensembl protein_coding_gene 39225 39803 . + . ID=Physo131464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160008;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 39225 39803 . + . ID=Physo131464;Parent=Physo131464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 39225 39241 . + 0 ID=Physo131464;Parent=Physo131464;rank=1 scaffold_16 . exon 39225 39241 . + . ID=Physo131464.1;Parent=Physo131464;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 39265 39439 . + 0 ID=Physo131464;Parent=Physo131464;rank=2 scaffold_16 . exon 39265 39439 . + . ID=Physo131464.2;Parent=Physo131464;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 39513 39803 . + 0 ID=Physo131464;Parent=Physo131464;rank=3 scaffold_16 . exon 39513 39803 . + . ID=Physo131464.3;Parent=Physo131464;constitutive=1;rank=3 scaffold_16 . repeat_region 46401 46553 . + . description=(CTA)n scaffold_16 . repeat_region 49746 49889 . + . description=(CTG)n scaffold_16 . repeat_region 49794 49839 . ? . description=trf scaffold_16 . repeat_region 49958 50263 . - . description=GypsyPi-1c_LTR scaffold_16 . repeat_region 51355 51362 . ? . description=dust scaffold_16 . biological_region 53019 53019 0.999 - . logic_name=eponine scaffold_16 . biological_region 58619 58622 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 55160 56794 . + . ID=Physo131465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160009;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 55160 56794 . + . ID=Physo131465;Parent=Physo131465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 55160 56794 . + 0 ID=Physo131465;Parent=Physo131465;rank=1 scaffold_16 . exon 55160 56794 . + . ID=Physo131465.1;Parent=Physo131465;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 57003 58520 . - . ID=Physo131466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160010;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 57003 58520 . - . ID=Physo131466;Parent=Physo131466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 57003 58520 . - 0 ID=Physo131466;Parent=Physo131466;rank=1 scaffold_16 . exon 57003 58520 . - . ID=Physo131466.1;Parent=Physo131466;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 59277 60887 . - . ID=Physo131467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160011;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 59277 60887 . - . ID=Physo131467;Parent=Physo131467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 59277 60887 . - 0 ID=Physo131467;Parent=Physo131467;rank=1 scaffold_16 . exon 59277 60887 . - . ID=Physo131467.1;Parent=Physo131467;constitutive=1;rank=1 scaffold_16 . repeat_region 67178 67197 . ? . description=trf scaffold_16 ensembl protein_coding_gene 61694 63223 . - . ID=Physo131468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160012;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 61694 63223 . - . ID=Physo131468;Parent=Physo131468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 61694 63223 . - 0 ID=Physo131468;Parent=Physo131468;rank=1 scaffold_16 . exon 61694 63223 . - . ID=Physo131468.1;Parent=Physo131468;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 63922 64997 . + . ID=Physo131469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160013;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 63922 64997 . + . ID=Physo131469;Parent=Physo131469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 63922 64143 . + 0 ID=Physo131469;Parent=Physo131469;rank=1 scaffold_16 . exon 63922 64143 . + . ID=Physo131469.1;Parent=Physo131469;constitutive=1;rank=1 scaffold_16 . CDS 64230 64373 . + 0 ID=Physo131469;Parent=Physo131469;rank=2 scaffold_16 . exon 64230 64373 . + . ID=Physo131469.2;Parent=Physo131469;constitutive=1;rank=2 scaffold_16 . CDS 64458 64570 . + 0 ID=Physo131469;Parent=Physo131469;rank=3 scaffold_16 . exon 64458 64570 . + . ID=Physo131469.3;Parent=Physo131469;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 64649 64997 . + 0 ID=Physo131469;Parent=Physo131469;rank=4 scaffold_16 . exon 64649 64997 . + . ID=Physo131469.4;Parent=Physo131469;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 ensembl protein_coding_gene 65027 65865 . - . ID=Physo131470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160014;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 65027 65865 . - . ID=Physo131470;Parent=Physo131470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 65027 65865 . - . ID=Physo131470.1;Parent=Physo131470;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 65140 65817 . - 0 ID=Physo131470;Parent=Physo131470;rank=1 scaffold_16 ensembl protein_coding_gene 67206 73930 . + . ID=Physo131471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160015;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 67206 73930 . + . ID=Physo131471;Parent=Physo131471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 67206 67920 . + 0 ID=Physo131471;Parent=Physo131471;rank=1 scaffold_16 . exon 67206 67920 . + . ID=Physo131471.1;Parent=Physo131471;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 67997 68196 . + 0 ID=Physo131471;Parent=Physo131471;rank=2 scaffold_16 . exon 67997 68196 . + . ID=Physo131471.2;Parent=Physo131471;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 68522 69448 . + 0 ID=Physo131471;Parent=Physo131471;rank=3 scaffold_16 . exon 68522 69448 . + . ID=Physo131471.3;Parent=Physo131471;constitutive=1;rank=3 scaffold_16 . CDS 69806 73930 . + 0 ID=Physo131471;Parent=Physo131471;rank=4 scaffold_16 . biological_region 75193 75195 0.999 + . logic_name=eponine scaffold_16 . biological_region 75322 75325 0.999 + . logic_name=eponine scaffold_16 . biological_region 75356 75356 0.999 + . logic_name=eponine scaffold_16 . biological_region 75367 75374 0.999 - . logic_name=eponine scaffold_16 . biological_region 78262 78264 0.999 + . logic_name=eponine scaffold_16 . biological_region 78472 78475 0.999 - . logic_name=eponine scaffold_16 . biological_region 79238 79243 0.999 + . logic_name=eponine scaffold_16 . biological_region 79304 79306 0.999 + . logic_name=eponine scaffold_16 . biological_region 79370 79373 0.999 + . logic_name=eponine scaffold_16 . biological_region 79723 79726 0.999 + . logic_name=eponine scaffold_16 . exon 69806 73930 . + . ID=Physo131471.4;Parent=Physo131471;constitutive=1;rank=4 scaffold_16 ensembl protein_coding_gene 74097 75485 . - . ID=Physo131472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160016;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 74097 75485 . - . ID=Physo131472;Parent=Physo131472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 74097 75485 . - 0 ID=Physo131472;Parent=Physo131472;rank=1 scaffold_16 . exon 74097 75485 . - . ID=Physo131472.1;Parent=Physo131472;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 75919 77520 . + . ID=Physo131473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160017;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 75919 77520 . + . ID=Physo131473;Parent=Physo131473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 75919 76640 . + . ID=Physo131473.1;Parent=Physo131473;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_16 . CDS 75967 76640 . + 0 ID=Physo131473;Parent=Physo131473;rank=1 scaffold_16 . CDS 76848 77520 . + 0 ID=Physo131473;Parent=Physo131473;rank=2 scaffold_16 . exon 76848 77520 . + . ID=Physo131473.2;Parent=Physo131473;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 ensembl protein_coding_gene 77714 80395 . - . ID=Physo131474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160018;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 77714 80395 . - . ID=Physo131474;Parent=Physo131474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 77714 80395 . - 0 ID=Physo131474;Parent=Physo131474;rank=1 scaffold_16 . exon 77714 80395 . - . ID=Physo131474.1;Parent=Physo131474;constitutive=1;rank=1 scaffold_16 . repeat_region 82387 82428 . ? . description=trf scaffold_16 . repeat_region 86948 86966 . ? . description=dust scaffold_16 ensembl protein_coding_gene 82341 84389 . + . ID=Physo113851;biotype=protein_coding;external_name=estExt_Genewise1.C_160173;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 82341 84389 . + . ID=Physo113851;Parent=Physo113851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 82341 82706 . + . ID=Physo113851.1;Parent=Physo113851;constitutive=1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 82365 82706 . + 0 ID=Physo113851;Parent=Physo113851;rank=1 scaffold_16 . CDS 82794 83590 . + 0 ID=Physo113851;Parent=Physo113851;rank=2 scaffold_16 . exon 82794 83590 . + . ID=Physo113851.2;Parent=Physo113851;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 83672 84389 . + 0 ID=Physo113851;Parent=Physo113851;rank=3 scaffold_16 . exon 83672 84389 . + . ID=Physo113851.3;Parent=Physo113851;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 ensembl protein_coding_gene 84854 86517 . - . ID=Physo131476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160020;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 84854 86517 . - . ID=Physo131476;Parent=Physo131476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 84854 86345 . - 0 ID=Physo131476;Parent=Physo131476;rank=2 scaffold_16 . exon 84854 86345 . - . ID=Physo131476.2;Parent=Physo131476;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 86426 86517 . - 0 ID=Physo131476;Parent=Physo131476;rank=1 scaffold_16 . exon 86426 86517 . - . ID=Physo131476.1;Parent=Physo131476;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . biological_region 92309 92309 0.999 + . logic_name=eponine scaffold_16 . biological_region 92816 92816 0.999 + . logic_name=eponine scaffold_16 . biological_region 92933 92937 0.999 + . logic_name=eponine scaffold_16 . biological_region 92967 92968 0.999 + . logic_name=eponine scaffold_16 . biological_region 93013 93014 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 91825 92904 . - . ID=Physo131477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160021;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 91825 92904 . - . ID=Physo131477;Parent=Physo131477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 91825 92702 . - 0 ID=Physo131477;Parent=Physo131477;rank=2 scaffold_16 . exon 91825 92702 . - . ID=Physo131477.2;Parent=Physo131477;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 92814 92904 . - 0 ID=Physo131477;Parent=Physo131477;rank=1 scaffold_16 . exon 92814 92904 . - . ID=Physo131477.1;Parent=Physo131477;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 93215 95316 . + . ID=Physo131478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160022;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 93215 95316 . + . ID=Physo131478;Parent=Physo131478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 93215 93372 . + 0 ID=Physo131478;Parent=Physo131478;rank=1 scaffold_16 . exon 93215 93372 . + . ID=Physo131478.1;Parent=Physo131478;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 93440 93546 . + 0 ID=Physo131478;Parent=Physo131478;rank=2 scaffold_16 . exon 93440 93546 . + . ID=Physo131478.2;Parent=Physo131478;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 93645 94521 . + 0 ID=Physo131478;Parent=Physo131478;rank=3 scaffold_16 . exon 93645 94521 . + . ID=Physo131478.3;Parent=Physo131478;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_16 . CDS 94594 94708 . + 0 ID=Physo131478;Parent=Physo131478;rank=4 scaffold_16 . exon 94594 94708 . + . ID=Physo131478.4;Parent=Physo131478;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 94855 95316 . + 0 ID=Physo131478;Parent=Physo131478;rank=5 scaffold_16 . exon 94855 95316 . + . ID=Physo131478.5;Parent=Physo131478;constitutive=1;rank=5 scaffold_16 . repeat_region 107196 107204 . ? . description=dust scaffold_16 . repeat_region 107288 107307 . ? . description=dust scaffold_16 . repeat_region 108129 108142 . ? . description=dust scaffold_16 . repeat_region 109148 109155 . ? . description=dust scaffold_16 . repeat_region 109275 109290 . ? . description=dust scaffold_16 ensembl protein_coding_gene 109377 110800 . - . ID=Physo131479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160023;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 109377 110800 . - . ID=Physo131479;Parent=Physo131479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 109377 109730 . - 0 ID=Physo131479;Parent=Physo131479;rank=3 scaffold_16 . exon 109377 109730 . - . ID=Physo131479.3;Parent=Physo131479;constitutive=1;rank=3 scaffold_16 . CDS 109780 109980 . - 0 ID=Physo131479;Parent=Physo131479;rank=2 scaffold_16 . CDS 110117 110800 . - 0 ID=Physo131479;Parent=Physo131479;rank=1 scaffold_16 . repeat_region 110624 110695 . ? . description=trf scaffold_16 . biological_region 113062 113069 0.999 - . logic_name=eponine scaffold_16 . repeat_region 114158 114471 . + . description=GypsyPi-1c_LTR scaffold_16 . repeat_region 114472 118320 . + . description=GypsyPi-1c_I-int scaffold_16 . biological_region 114716 114717 0.999 + . logic_name=eponine scaffold_16 . biological_region 114974 114977 0.999 + . logic_name=eponine scaffold_16 . biological_region 114992 114995 0.999 - . logic_name=eponine scaffold_16 . repeat_region 116310 116475 . ? . description=trf scaffold_16 . repeat_region 116456 116522 . ? . description=trf scaffold_16 . repeat_region 118321 121225 . + . description=GypsyPi-1c_I-int scaffold_16 . biological_region 119166 119170 0.999 - . logic_name=eponine scaffold_16 . exon 109780 109980 . - . ID=Physo131479.2;Parent=Physo131479;constitutive=1;rank=2 scaffold_16 . exon 110117 110800 . - . ID=Physo131479.1;Parent=Physo131479;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 114583 119460 . + . ID=Physo131480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160024;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 114583 119460 . + . ID=Physo131480;Parent=Physo131480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 114583 115510 . + 0 ID=Physo131480;Parent=Physo131480;rank=1 scaffold_16 . exon 114583 115510 . + . ID=Physo131480.1;Parent=Physo131480;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 115666 116207 . + 0 ID=Physo131480;Parent=Physo131480;rank=2 scaffold_16 . exon 115666 116207 . + . ID=Physo131480.2;Parent=Physo131480;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 116242 116333 . + 0 ID=Physo131480;Parent=Physo131480;rank=3 scaffold_16 . exon 116242 116333 . + . ID=Physo131480.3;Parent=Physo131480;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 116502 118350 . + 0 ID=Physo131480;Parent=Physo131480;rank=4 scaffold_16 . exon 116502 118350 . + . ID=Physo131480.4;Parent=Physo131480;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 118404 119405 . + 0 ID=Physo131480;Parent=Physo131480;rank=5 scaffold_16 . exon 118404 119405 . + . ID=Physo131480.5;Parent=Physo131480;constitutive=1;rank=5 scaffold_16 . CDS 119452 119460 . + 0 ID=Physo131480;Parent=Physo131480;rank=6 scaffold_16 . exon 119452 119460 . + . ID=Physo131480.6;Parent=Physo131480;constitutive=1;rank=6 scaffold_16 ensembl protein_coding_gene 119598 121930 . - . ID=Physo131481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160025;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 119598 121930 . - . ID=Physo131481;Parent=Physo131481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 119598 120760 . - 0 ID=Physo131481;Parent=Physo131481;rank=2 scaffold_16 . exon 119598 120760 . - . ID=Physo131481.2;Parent=Physo131481;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 120907 121930 . - 0 ID=Physo131481;Parent=Physo131481;rank=1 scaffold_16 . repeat_region 129457 129513 . ? . description=dust scaffold_16 . exon 120907 121930 . - . ID=Physo131481.1;Parent=Physo131481;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 126103 127113 . - . ID=Physo131482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160026;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 126103 127113 . - . ID=Physo131482;Parent=Physo131482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 126103 127113 . - 0 ID=Physo131482;Parent=Physo131482;rank=1 scaffold_16 . exon 126103 127113 . - . ID=Physo131482.1;Parent=Physo131482;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 127965 129990 . - . ID=Physo131483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160027;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 127965 129990 . - . ID=Physo131483;Parent=Physo131483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 127965 128220 . - 0 ID=Physo131483;Parent=Physo131483;rank=5 scaffold_16 . exon 127965 128220 . - . ID=Physo131483.5;Parent=Physo131483;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 128248 128268 . - 0 ID=Physo131483;Parent=Physo131483;rank=4 scaffold_16 . exon 128248 128268 . - . ID=Physo131483.4;Parent=Physo131483;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_16 . CDS 128318 128401 . - 0 ID=Physo131483;Parent=Physo131483;rank=3 scaffold_16 . exon 128318 128401 . - . ID=Physo131483.3;Parent=Physo131483;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_16 . CDS 128488 128819 . - 0 ID=Physo131483;Parent=Physo131483;rank=2 scaffold_16 . exon 128488 128819 . - . ID=Physo131483.2;Parent=Physo131483;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 128920 129990 . - 0 ID=Physo131483;Parent=Physo131483;rank=1 scaffold_16 . exon 128920 129990 . - . ID=Physo131483.1;Parent=Physo131483;constitutive=1;rank=1 scaffold_16 . biological_region 130197 130202 0.999 + . logic_name=eponine scaffold_16 . biological_region 130255 130258 0.999 + . logic_name=eponine scaffold_16 . biological_region 130272 130274 0.999 + . logic_name=eponine scaffold_16 . biological_region 130305 130308 0.999 - . logic_name=eponine scaffold_16 . repeat_region 134176 134215 . ? . description=trf scaffold_16 . repeat_region 134177 134214 . ? . description=trf scaffold_16 . repeat_region 135263 135289 . ? . description=trf scaffold_16 ensembl protein_coding_gene 130209 132882 . + . ID=Physo131484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160028;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 130209 132882 . + . ID=Physo131484;Parent=Physo131484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 130209 130662 . + 0 ID=Physo131484;Parent=Physo131484;rank=1 scaffold_16 . exon 130209 130662 . + . ID=Physo131484.1;Parent=Physo131484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 130772 130835 . + 0 ID=Physo131484;Parent=Physo131484;rank=2 scaffold_16 . exon 130772 130835 . + . ID=Physo131484.2;Parent=Physo131484;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 130905 132084 . + 0 ID=Physo131484;Parent=Physo131484;rank=3 scaffold_16 . exon 130905 132084 . + . ID=Physo131484.3;Parent=Physo131484;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 132181 132251 . + 0 ID=Physo131484;Parent=Physo131484;rank=4 scaffold_16 . exon 132181 132251 . + . ID=Physo131484.4;Parent=Physo131484;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 132313 132427 . + 0 ID=Physo131484;Parent=Physo131484;rank=5 scaffold_16 . exon 132313 132427 . + . ID=Physo131484.5;Parent=Physo131484;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 132532 132882 . + 0 ID=Physo131484;Parent=Physo131484;rank=6 scaffold_16 . exon 132532 132882 . + . ID=Physo131484.6;Parent=Physo131484;constitutive=1;rank=6 scaffold_16 ensembl protein_coding_gene 133742 134538 . + . ID=Physo131485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160029;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 133742 134538 . + . ID=Physo131485;Parent=Physo131485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 133742 134281 . + 0 ID=Physo131485;Parent=Physo131485;rank=1 scaffold_16 . exon 133742 134281 . + . ID=Physo131485.1;Parent=Physo131485;constitutive=1;rank=1 scaffold_16 . CDS 134521 134538 . + 0 ID=Physo131485;Parent=Physo131485;rank=2 scaffold_16 . exon 134521 134538 . + . ID=Physo131485.2;Parent=Physo131485;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 134812 135495 . - . ID=Physo131486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160030;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 134812 135495 . - . ID=Physo131486;Parent=Physo131486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 134812 135495 . - 0 ID=Physo131486;Parent=Physo131486;rank=1 scaffold_16 . exon 134812 135495 . - . ID=Physo131486.1;Parent=Physo131486;constitutive=1;rank=1 scaffold_16 . repeat_region 142872 142881 . ? . description=dust scaffold_16 . repeat_region 146181 146276 . ? . description=dust scaffold_16 . repeat_region 148761 149309 . + . description=GypsyPi-1c_I-int scaffold_16 ensembl protein_coding_gene 141053 141846 . - . ID=Physo131487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160031;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 141053 141846 . - . ID=Physo131487;Parent=Physo131487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 141053 141178 . - 0 ID=Physo131487;Parent=Physo131487;rank=2 scaffold_16 . exon 141053 141178 . - . ID=Physo131487.2;Parent=Physo131487;constitutive=1;rank=2 scaffold_16 . CDS 141217 141846 . - 0 ID=Physo131487;Parent=Physo131487;rank=1 scaffold_16 . exon 141217 141846 . - . ID=Physo131487.1;Parent=Physo131487;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 147959 152561 . + . ID=Physo131488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160032;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 147959 152561 . + . ID=Physo131488;Parent=Physo131488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 147959 148279 . + 0 ID=Physo131488;Parent=Physo131488;rank=1 scaffold_16 . exon 147959 148279 . + . ID=Physo131488.1;Parent=Physo131488;constitutive=1;rank=1 scaffold_16 . CDS 148308 148635 . + 0 ID=Physo131488;Parent=Physo131488;rank=2 scaffold_16 . exon 148308 148635 . + . ID=Physo131488.2;Parent=Physo131488;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 148911 149192 . + 0 ID=Physo131488;Parent=Physo131488;rank=3 scaffold_16 . exon 148911 149192 . + . ID=Physo131488.3;Parent=Physo131488;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 149274 149990 . + 0 ID=Physo131488;Parent=Physo131488;rank=4 scaffold_16 . exon 149274 149990 . + . ID=Physo131488.4;Parent=Physo131488;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 150150 152378 . + 0 ID=Physo131488;Parent=Physo131488;rank=5 scaffold_16 . CDS 152536 152561 . + 0 ID=Physo131488;Parent=Physo131488;rank=6 scaffold_16 . repeat_region 149436 149700 . ? . description=trf scaffold_16 . biological_region 149542 149544 0.999 - . logic_name=eponine scaffold_16 . repeat_region 153036 153078 . ? . description=trf scaffold_16 . biological_region 154502 154509 0.999 + . logic_name=eponine scaffold_16 . biological_region 154616 154619 0.999 + . logic_name=eponine scaffold_16 . biological_region 154636 154645 0.999 + . logic_name=eponine scaffold_16 . biological_region 157657 157660 0.999 - . logic_name=eponine scaffold_16 . exon 150150 152378 . + . ID=Physo131488.5;Parent=Physo131488;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_16 . exon 152536 152561 . + . ID=Physo131488.6;Parent=Physo131488;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 ensembl protein_coding_gene 153084 154718 . - . ID=Physo131489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160033;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 153084 154718 . - . ID=Physo131489;Parent=Physo131489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 153084 154718 . - 0 ID=Physo131489;Parent=Physo131489;rank=1 scaffold_16 . exon 153084 154718 . - . ID=Physo131489.1;Parent=Physo131489;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 157612 158159 . - . ID=Physo131490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160034;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 157612 158159 . - . ID=Physo131490;Parent=Physo131490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 157612 157652 . - 0 ID=Physo131490;Parent=Physo131490;rank=2 scaffold_16 . exon 157612 157652 . - . ID=Physo131490.2;Parent=Physo131490;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 157688 158159 . - 0 ID=Physo131490;Parent=Physo131490;rank=1 scaffold_16 . exon 157688 158159 . - . ID=Physo131490.1;Parent=Physo131490;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . repeat_region 160127 160171 . ? . description=dust scaffold_16 . repeat_region 162638 162645 . ? . description=dust scaffold_16 ensembl protein_coding_gene 161309 164466 . + . ID=Physo131491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160035;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 161309 164466 . + . ID=Physo131491;Parent=Physo131491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 161309 161552 . + 0 ID=Physo131491;Parent=Physo131491;rank=1 scaffold_16 . exon 161309 161552 . + . ID=Physo131491.1;Parent=Physo131491;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 161736 162457 . + 0 ID=Physo131491;Parent=Physo131491;rank=2 scaffold_16 . exon 161736 162457 . + . ID=Physo131491.2;Parent=Physo131491;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 162681 162908 . + 0 ID=Physo131491;Parent=Physo131491;rank=3 scaffold_16 . exon 162681 162908 . + . ID=Physo131491.3;Parent=Physo131491;constitutive=1;rank=3 scaffold_16 . CDS 163254 163617 . + 0 ID=Physo131491;Parent=Physo131491;rank=4 scaffold_16 . exon 163254 163617 . + . ID=Physo131491.4;Parent=Physo131491;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_16 . CDS 163889 164466 . + 0 ID=Physo131491;Parent=Physo131491;rank=5 scaffold_16 . exon 163889 164466 . + . ID=Physo131491.5;Parent=Physo131491;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 ensembl protein_coding_gene 165822 171291 . + . ID=Physo131492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160036;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 165822 171291 . + . ID=Physo131492;Parent=Physo131492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 165822 166895 . + 0 ID=Physo131492;Parent=Physo131492;rank=1 scaffold_16 . exon 165822 166895 . + . ID=Physo131492.1;Parent=Physo131492;constitutive=1;rank=1 scaffold_16 . CDS 166917 167192 . + 0 ID=Physo131492;Parent=Physo131492;rank=2 scaffold_16 . exon 166917 167192 . + . ID=Physo131492.2;Parent=Physo131492;constitutive=1;rank=2 scaffold_16 . CDS 167279 167626 . + 0 ID=Physo131492;Parent=Physo131492;rank=3 scaffold_16 . exon 167279 167626 . + . ID=Physo131492.3;Parent=Physo131492;constitutive=1;rank=3 scaffold_16 . CDS 167647 167916 . + 0 ID=Physo131492;Parent=Physo131492;rank=4 scaffold_16 . exon 167647 167916 . + . ID=Physo131492.4;Parent=Physo131492;constitutive=1;rank=4 scaffold_16 . CDS 168028 168174 . + 0 ID=Physo131492;Parent=Physo131492;rank=5 scaffold_16 . exon 168028 168174 . + . ID=Physo131492.5;Parent=Physo131492;constitutive=1;rank=5 scaffold_16 . CDS 168319 168654 . + 0 ID=Physo131492;Parent=Physo131492;rank=6 scaffold_16 . exon 168319 168654 . + . ID=Physo131492.6;Parent=Physo131492;constitutive=1;rank=6 scaffold_16 . CDS 168823 169194 . + 0 ID=Physo131492;Parent=Physo131492;rank=7 scaffold_16 . exon 168823 169194 . + . ID=Physo131492.7;Parent=Physo131492;constitutive=1;rank=7 scaffold_16 . CDS 169252 170018 . + 0 ID=Physo131492;Parent=Physo131492;rank=8 scaffold_16 . exon 169252 170018 . + . ID=Physo131492.8;Parent=Physo131492;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_16 . CDS 170213 170411 . + 0 ID=Physo131492;Parent=Physo131492;rank=9 scaffold_16 . CDS 170432 170837 . + 0 ID=Physo131492;Parent=Physo131492;rank=10 scaffold_16 . CDS 170912 171291 . + 0 ID=Physo131492;Parent=Physo131492;rank=11 scaffold_16 . repeat_region 173309 173346 . ? . description=trf scaffold_16 . repeat_region 174273 174365 . ? . description=trf scaffold_16 . repeat_region 174273 174383 . ? . description=trf scaffold_16 . repeat_region 174298 174330 . ? . description=trf scaffold_16 . biological_region 174398 174400 0.999 - . logic_name=eponine scaffold_16 . biological_region 175340 175342 0.999 - . logic_name=eponine scaffold_16 . repeat_region 176702 176750 . ? . description=trf scaffold_16 . repeat_region 176857 176898 . ? . description=trf scaffold_16 . biological_region 178466 178468 0.999 + . logic_name=eponine scaffold_16 . exon 170213 170411 . + . ID=Physo131492.9;Parent=Physo131492;constitutive=1;ensembl_phase=2;rank=9 scaffold_16 . exon 170432 170837 . + . ID=Physo131492.10;Parent=Physo131492;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_16 . exon 170912 171291 . + . ID=Physo131492.11;Parent=Physo131492;constitutive=1;ensembl_phase=1;rank=11 scaffold_16 ensembl protein_coding_gene 171674 173496 . - . ID=Physo131493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160037;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 171674 173496 . - . ID=Physo131493;Parent=Physo131493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 171674 171835 . - 0 ID=Physo131493;Parent=Physo131493;rank=4 scaffold_16 . exon 171674 171835 . - . ID=Physo131493.4;Parent=Physo131493;constitutive=1;rank=4 scaffold_16 . CDS 172108 172174 . - 0 ID=Physo131493;Parent=Physo131493;rank=3 scaffold_16 . exon 172108 172174 . - . ID=Physo131493.3;Parent=Physo131493;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 172296 173253 . - 0 ID=Physo131493;Parent=Physo131493;rank=2 scaffold_16 . exon 172296 173253 . - . ID=Physo131493.2;Parent=Physo131493;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 173364 173496 . - 0 ID=Physo131493;Parent=Physo131493;rank=1 scaffold_16 . exon 173364 173496 . - . ID=Physo131493.1;Parent=Physo131493;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 174545 175961 . - . ID=Physo131494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160038;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 174545 175961 . - . ID=Physo131494;Parent=Physo131494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 174545 175169 . - 0 ID=Physo131494;Parent=Physo131494;rank=3 scaffold_16 . exon 174545 175169 . - . ID=Physo131494.3;Parent=Physo131494;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 175304 175738 . - 0 ID=Physo131494;Parent=Physo131494;rank=2 scaffold_16 . exon 175304 175738 . - . ID=Physo131494.2;Parent=Physo131494;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 175831 175961 . - 0 ID=Physo131494;Parent=Physo131494;rank=1 scaffold_16 . exon 175831 175961 . - . ID=Physo131494.1;Parent=Physo131494;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 178212 178583 . - . ID=Physo131495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160039;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 178212 178583 . - . ID=Physo131495;Parent=Physo131495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 178212 178583 . - 0 ID=Physo131495;Parent=Physo131495;rank=1 scaffold_16 . exon 178212 178583 . - . ID=Physo131495.1;Parent=Physo131495;constitutive=1;rank=1 scaffold_16 . repeat_region 180472 180479 . ? . description=dust scaffold_16 . repeat_region 182343 182350 . ? . description=dust scaffold_16 ensembl protein_coding_gene 183116 184708 . + . ID=Physo131496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160040;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 183116 184708 . + . ID=Physo131496;Parent=Physo131496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 183116 184708 . + 0 ID=Physo131496;Parent=Physo131496;rank=1 scaffold_16 . exon 183116 184708 . + . ID=Physo131496.1;Parent=Physo131496;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 184841 186491 . - . ID=Physo131497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160041;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 184841 186491 . - . ID=Physo131497;Parent=Physo131497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 184841 185890 . - 0 ID=Physo131497;Parent=Physo131497;rank=2 scaffold_16 . exon 184841 185890 . - . ID=Physo131497.2;Parent=Physo131497;constitutive=1;rank=2 scaffold_16 . CDS 186156 186491 . - 0 ID=Physo131497;Parent=Physo131497;rank=1 scaffold_16 . exon 186156 186491 . - . ID=Physo131497.1;Parent=Physo131497;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 186822 189448 . - . ID=Physo131498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160042;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 186822 189448 . - . ID=Physo131498;Parent=Physo131498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 186822 186906 . - 0 ID=Physo131498;Parent=Physo131498;rank=7 scaffold_16 . exon 186822 186906 . - . ID=Physo131498.7;Parent=Physo131498;constitutive=1;ensembl_phase=2;rank=7 scaffold_16 . CDS 187008 187216 . - 0 ID=Physo131498;Parent=Physo131498;rank=6 scaffold_16 . exon 187008 187216 . - . ID=Physo131498.6;Parent=Physo131498;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_16 . CDS 187258 187269 . - 0 ID=Physo131498;Parent=Physo131498;rank=5 scaffold_16 . exon 187258 187269 . - . ID=Physo131498.5;Parent=Physo131498;constitutive=1;rank=5 scaffold_16 . CDS 187485 187819 . - 0 ID=Physo131498;Parent=Physo131498;rank=4 scaffold_16 . exon 187485 187819 . - . ID=Physo131498.4;Parent=Physo131498;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 187861 188117 . - 0 ID=Physo131498;Parent=Physo131498;rank=3 scaffold_16 . exon 187861 188117 . - . ID=Physo131498.3;Parent=Physo131498;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 188160 188226 . - 0 ID=Physo131498;Parent=Physo131498;rank=2 scaffold_16 . exon 188160 188226 . - . ID=Physo131498.2;Parent=Physo131498;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 188626 189448 . - 0 ID=Physo131498;Parent=Physo131498;rank=1 scaffold_16 . exon 188626 189448 . - . ID=Physo131498.1;Parent=Physo131498;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . biological_region 198829 198831 0.999 - . logic_name=eponine scaffold_16 . biological_region 198867 198870 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 189836 192183 . - . ID=Physo131499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160043;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 189836 192183 . - . ID=Physo131499;Parent=Physo131499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 189836 190415 . - 0 ID=Physo131499;Parent=Physo131499;rank=4 scaffold_16 . exon 189836 190415 . - . ID=Physo131499.4;Parent=Physo131499;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 190482 190555 . - 0 ID=Physo131499;Parent=Physo131499;rank=3 scaffold_16 . exon 190482 190555 . - . ID=Physo131499.3;Parent=Physo131499;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 190629 191228 . - 0 ID=Physo131499;Parent=Physo131499;rank=2 scaffold_16 . exon 190629 191228 . - . ID=Physo131499.2;Parent=Physo131499;constitutive=1;rank=2 scaffold_16 . CDS 191302 192183 . - 0 ID=Physo131499;Parent=Physo131499;rank=1 scaffold_16 . exon 191302 192183 . - . ID=Physo131499.1;Parent=Physo131499;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 192551 196191 . - . ID=Physo131500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160044;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 192551 196191 . - . ID=Physo131500;Parent=Physo131500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 192551 193440 . - 0 ID=Physo131500;Parent=Physo131500;rank=6 scaffold_16 . exon 192551 193440 . - . ID=Physo131500.6;Parent=Physo131500;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 . CDS 193681 193721 . - 0 ID=Physo131500;Parent=Physo131500;rank=5 scaffold_16 . exon 193681 193721 . - . ID=Physo131500.5;Parent=Physo131500;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 193881 193968 . - 0 ID=Physo131500;Parent=Physo131500;rank=4 scaffold_16 . exon 193881 193968 . - . ID=Physo131500.4;Parent=Physo131500;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_16 . CDS 194035 194969 . - 0 ID=Physo131500;Parent=Physo131500;rank=3 scaffold_16 . exon 194035 194969 . - . ID=Physo131500.3;Parent=Physo131500;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 195068 195155 . - 0 ID=Physo131500;Parent=Physo131500;rank=2 scaffold_16 . exon 195068 195155 . - . ID=Physo131500.2;Parent=Physo131500;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 195192 196191 . - 0 ID=Physo131500;Parent=Physo131500;rank=1 scaffold_16 . exon 195192 196191 . - . ID=Physo131500.1;Parent=Physo131500;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 198572 200304 . + . ID=Physo131501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160045;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 198572 200304 . + . ID=Physo131501;Parent=Physo131501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 198572 199948 . + 0 ID=Physo131501;Parent=Physo131501;rank=1 scaffold_16 . exon 198572 200304 . + . ID=Physo131501.1;Parent=Physo131501;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_16 . repeat_region 206053 206061 . ? . description=dust scaffold_16 . repeat_region 208715 208722 . ? . description=dust scaffold_16 ensembl protein_coding_gene 200301 201030 . - . ID=Physo131502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160046;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 200301 201030 . - . ID=Physo131502;Parent=Physo131502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 200301 201030 . - . ID=Physo131502.1;Parent=Physo131502;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 200334 200996 . - 0 ID=Physo131502;Parent=Physo131502;rank=1 scaffold_16 ensembl protein_coding_gene 204919 206016 . + . ID=Physo131504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160048;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 204919 206016 . + . ID=Physo131504;Parent=Physo131504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 204919 206016 . + 0 ID=Physo131504;Parent=Physo131504;rank=1 scaffold_16 . exon 204919 206016 . + . ID=Physo131504.1;Parent=Physo131504;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 207994 208750 . + . ID=Physo131505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160049;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 207994 208750 . + . ID=Physo131505;Parent=Physo131505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 207994 208750 . + . ID=Physo131505.1;Parent=Physo131505;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 208019 208642 . + 0 ID=Physo131505;Parent=Physo131505;rank=1 scaffold_16 ensembl protein_coding_gene 201453 204406 . - . ID=Physo156294;biotype=protein_coding;external_name=C_scaffold_16000010;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 201453 204406 . - . ID=Physo156294;Parent=Physo156294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 201453 201539 . - 0 ID=Physo156294;Parent=Physo156294;rank=8 scaffold_16 . exon 201453 201539 . - . ID=Physo156294.8;Parent=Physo156294;constitutive=1;rank=8 scaffold_16 . CDS 201615 202002 . - 0 ID=Physo156294;Parent=Physo156294;rank=7 scaffold_16 . exon 201615 202002 . - . ID=Physo156294.7;Parent=Physo156294;constitutive=1;ensembl_phase=2;rank=7 scaffold_16 . CDS 202071 202221 . - 0 ID=Physo156294;Parent=Physo156294;rank=6 scaffold_16 . exon 202071 202221 . - . ID=Physo156294.6;Parent=Physo156294;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_16 . CDS 202312 202476 . - 0 ID=Physo156294;Parent=Physo156294;rank=5 scaffold_16 . exon 202312 202476 . - . ID=Physo156294.5;Parent=Physo156294;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 202797 203147 . - 0 ID=Physo156294;Parent=Physo156294;rank=4 scaffold_16 . exon 202797 203147 . - . ID=Physo156294.4;Parent=Physo156294;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 203237 203387 . - 0 ID=Physo156294;Parent=Physo156294;rank=3 scaffold_16 . exon 203237 203387 . - . ID=Physo156294.3;Parent=Physo156294;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 203457 204078 . - 0 ID=Physo156294;Parent=Physo156294;rank=2 scaffold_16 . exon 203457 204078 . - . ID=Physo156294.2;Parent=Physo156294;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 204153 204406 . - 0 ID=Physo156294;Parent=Physo156294;rank=1 scaffold_16 . exon 204153 204406 . - . ID=Physo156294.1;Parent=Physo156294;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . biological_region 214044 214048 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 210811 211644 . - . ID=Physo108564;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160003;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 210811 211644 . - . ID=Physo108564;Parent=Physo108564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 210811 211035 . - 0 ID=Physo108564;Parent=Physo108564;rank=2 scaffold_16 . exon 210811 211035 . - . ID=Physo108564.2;Parent=Physo108564;constitutive=1;rank=2 scaffold_16 . CDS 211069 211644 . - 0 ID=Physo108564;Parent=Physo108564;rank=1 scaffold_16 . exon 211069 211644 . - . ID=Physo108564.1;Parent=Physo108564;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 211798 214903 . - . ID=Physo131507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160051;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 211798 214903 . - . ID=Physo131507;Parent=Physo131507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 211798 213236 . - . ID=Physo131507.4;Parent=Physo131507;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_16 . CDS 211800 213236 . - 0 ID=Physo131507;Parent=Physo131507;rank=4 scaffold_16 . CDS 213275 213597 . - 0 ID=Physo131507;Parent=Physo131507;rank=3 scaffold_16 . exon 213275 213597 . - . ID=Physo131507.3;Parent=Physo131507;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 213640 214498 . - 0 ID=Physo131507;Parent=Physo131507;rank=2 scaffold_16 . exon 213640 214498 . - . ID=Physo131507.2;Parent=Physo131507;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 214523 214903 . - 0 ID=Physo131507;Parent=Physo131507;rank=1 scaffold_16 . exon 214523 214903 . - . ID=Physo131507.1;Parent=Physo131507;constitutive=1;rank=1 scaffold_16 . repeat_region 222314 222322 . ? . description=dust scaffold_16 ensembl protein_coding_gene 225745 228161 . + . ID=Physo131508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160052;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 225745 228161 . + . ID=Physo131508;Parent=Physo131508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 225745 225856 . + 0 ID=Physo131508;Parent=Physo131508;rank=1 scaffold_16 . exon 225745 225856 . + . ID=Physo131508.1;Parent=Physo131508;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 225947 226020 . + 0 ID=Physo131508;Parent=Physo131508;rank=2 scaffold_16 . exon 225947 226020 . + . ID=Physo131508.2;Parent=Physo131508;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 226104 228161 . + 0 ID=Physo131508;Parent=Physo131508;rank=3 scaffold_16 . exon 226104 228161 . + . ID=Physo131508.3;Parent=Physo131508;constitutive=1;rank=3 scaffold_16 . biological_region 230573 230577 0.999 + . logic_name=eponine scaffold_16 . biological_region 230672 230676 0.999 + . logic_name=eponine scaffold_16 . biological_region 230702 230709 0.999 - . logic_name=eponine scaffold_16 . biological_region 230742 230743 0.999 - . logic_name=eponine scaffold_16 . biological_region 232607 232608 0.999 - . logic_name=eponine scaffold_16 . biological_region 239160 239162 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 230107 230865 . - . ID=Physo131509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160053;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 230107 230865 . - . ID=Physo131509;Parent=Physo131509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 230107 230865 . - . ID=Physo131509.1;Parent=Physo131509;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 230217 230840 . - 0 ID=Physo131509;Parent=Physo131509;rank=1 scaffold_16 ensembl protein_coding_gene 232287 232727 . - . ID=Physo131510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160054;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 232287 232727 . - . ID=Physo131510;Parent=Physo131510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 232287 232727 . - 0 ID=Physo131510;Parent=Physo131510;rank=1 scaffold_16 . exon 232287 232727 . - . ID=Physo131510.1;Parent=Physo131510;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 236372 239970 . - . ID=Physo131511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160055;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 236372 239970 . - . ID=Physo131511;Parent=Physo131511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 236372 236578 . - 0 ID=Physo131511;Parent=Physo131511;rank=3 scaffold_16 . exon 236372 236578 . - . ID=Physo131511.3;Parent=Physo131511;constitutive=1;rank=3 scaffold_16 . CDS 236653 239452 . - 0 ID=Physo131511;Parent=Physo131511;rank=2 scaffold_16 . exon 236653 239452 . - . ID=Physo131511.2;Parent=Physo131511;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 239891 239970 . - 0 ID=Physo131511;Parent=Physo131511;rank=1 scaffold_16 . repeat_region 245867 245933 . ? . description=dust scaffold_16 . repeat_region 245892 245929 . ? . description=trf scaffold_16 ensembl protein_coding_gene 246219 247359 . + . ID=Physo108565;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160004;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 246219 247359 . + . ID=Physo108565;Parent=Physo108565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 246219 246290 . + . ID=Physo108565.1;Parent=Physo108565;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 246281 246290 . + 0 ID=Physo108565;Parent=Physo108565;rank=1 scaffold_16 . CDS 246685 246844 . + 0 ID=Physo108565;Parent=Physo108565;rank=2 scaffold_16 . exon 246685 246844 . + . ID=Physo108565.2;Parent=Physo108565;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 246923 247190 . + 0 ID=Physo108565;Parent=Physo108565;rank=3 scaffold_16 . exon 246923 247359 . + . ID=Physo108565.3;Parent=Physo108565;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_16 . exon 239891 239970 . - . ID=Physo131511.1;Parent=Physo131511;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 240281 241773 . + . ID=Physo156296;biotype=protein_coding;external_name=C_scaffold_16000012;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 240281 241773 . + . ID=Physo156296;Parent=Physo156296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 240281 240329 . + 0 ID=Physo156296;Parent=Physo156296;rank=1 scaffold_16 . exon 240281 240329 . + . ID=Physo156296.1;Parent=Physo156296;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 240406 240556 . + 0 ID=Physo156296;Parent=Physo156296;rank=2 scaffold_16 . exon 240406 240556 . + . ID=Physo156296.2;Parent=Physo156296;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 240641 240719 . + 0 ID=Physo156296;Parent=Physo156296;rank=3 scaffold_16 . exon 240641 240719 . + . ID=Physo156296.3;Parent=Physo156296;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 240797 241117 . + 0 ID=Physo156296;Parent=Physo156296;rank=4 scaffold_16 . exon 240797 241117 . + . ID=Physo156296.4;Parent=Physo156296;constitutive=1;rank=4 scaffold_16 . CDS 241186 241262 . + 0 ID=Physo156296;Parent=Physo156296;rank=5 scaffold_16 . exon 241186 241262 . + . ID=Physo156296.5;Parent=Physo156296;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_16 . CDS 241416 241624 . + 0 ID=Physo156296;Parent=Physo156296;rank=6 scaffold_16 . exon 241416 241624 . + . ID=Physo156296.6;Parent=Physo156296;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_16 . CDS 241703 241773 . + 0 ID=Physo156296;Parent=Physo156296;rank=7 scaffold_16 . exon 241703 241773 . + . ID=Physo156296.7;Parent=Physo156296;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 ensembl protein_coding_gene 242910 245954 . + . ID=Physo156297;biotype=protein_coding;external_name=C_scaffold_16000013;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 242910 245954 . + . ID=Physo156297;Parent=Physo156297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 242910 243435 . + 0 ID=Physo156297;Parent=Physo156297;rank=1 scaffold_16 . exon 242910 243435 . + . ID=Physo156297.1;Parent=Physo156297;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 243697 244142 . + 0 ID=Physo156297;Parent=Physo156297;rank=2 scaffold_16 . exon 243697 244142 . + . ID=Physo156297.2;Parent=Physo156297;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 244179 244459 . + 0 ID=Physo156297;Parent=Physo156297;rank=3 scaffold_16 . exon 244179 244459 . + . ID=Physo156297.3;Parent=Physo156297;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 244538 245954 . + 0 ID=Physo156297;Parent=Physo156297;rank=4 scaffold_16 . exon 244538 245954 . + . ID=Physo156297.4;Parent=Physo156297;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 ensembl protein_coding_gene 249347 250132 . + . ID=Physo131514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160058;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 249347 250132 . + . ID=Physo131514;Parent=Physo131514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 249347 249704 . + 0 ID=Physo131514;Parent=Physo131514;rank=1 scaffold_16 . exon 249347 249704 . + . ID=Physo131514.1;Parent=Physo131514;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 249920 249931 . + 0 ID=Physo131514;Parent=Physo131514;rank=2 scaffold_16 . exon 249920 249931 . + . ID=Physo131514.2;Parent=Physo131514;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 249984 250132 . + 0 ID=Physo131514;Parent=Physo131514;rank=3 scaffold_16 . exon 249984 250132 . + . ID=Physo131514.3;Parent=Physo131514;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 ensembl protein_coding_gene 256098 256693 . + . ID=Physo131515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160059;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 256098 256693 . + . ID=Physo131515;Parent=Physo131515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 256098 256537 . + 0 ID=Physo131515;Parent=Physo131515;rank=1 scaffold_16 . exon 256098 256537 . + . ID=Physo131515.1;Parent=Physo131515;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 256651 256693 . + 0 ID=Physo131515;Parent=Physo131515;rank=2 scaffold_16 . exon 256651 256693 . + . ID=Physo131515.2;Parent=Physo131515;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 ensembl protein_coding_gene 257442 258266 . + . ID=Physo131516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160060;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 257442 258266 . + . ID=Physo131516;Parent=Physo131516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 257442 257517 . + 0 ID=Physo131516;Parent=Physo131516;rank=1 scaffold_16 . exon 257442 257517 . + . ID=Physo131516.1;Parent=Physo131516;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 257614 258266 . + 0 ID=Physo131516;Parent=Physo131516;rank=2 scaffold_16 . exon 257614 258266 . + . ID=Physo131516.2;Parent=Physo131516;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 261352 262056 . + . ID=Physo131517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160061;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 261352 262056 . + . ID=Physo131517;Parent=Physo131517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 261352 262056 . + 0 ID=Physo131517;Parent=Physo131517;rank=1 scaffold_16 . exon 261352 262056 . + . ID=Physo131517.1;Parent=Physo131517;constitutive=1;rank=1 scaffold_16 . repeat_region 273291 273299 . ? . description=dust scaffold_16 . repeat_region 276222 276231 . ? . description=dust scaffold_16 ensembl protein_coding_gene 273717 275285 . - . ID=Physo131518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160062;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 273717 275285 . - . ID=Physo131518;Parent=Physo131518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 273717 275285 . - 0 ID=Physo131518;Parent=Physo131518;rank=1 scaffold_16 . exon 273717 275285 . - . ID=Physo131518.1;Parent=Physo131518;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 275473 276705 . + . ID=Physo131519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160063;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 275473 276705 . + . ID=Physo131519;Parent=Physo131519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 275473 275965 . + 0 ID=Physo131519;Parent=Physo131519;rank=1 scaffold_16 . exon 275473 275965 . + . ID=Physo131519.1;Parent=Physo131519;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 276032 276192 . + 0 ID=Physo131519;Parent=Physo131519;rank=2 scaffold_16 . exon 276032 276192 . + . ID=Physo131519.2;Parent=Physo131519;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 276268 276379 . + 0 ID=Physo131519;Parent=Physo131519;rank=3 scaffold_16 . exon 276268 276379 . + . ID=Physo131519.3;Parent=Physo131519;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 276449 276520 . + 0 ID=Physo131519;Parent=Physo131519;rank=4 scaffold_16 . exon 276449 276520 . + . ID=Physo131519.4;Parent=Physo131519;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 276584 276705 . + 0 ID=Physo131519;Parent=Physo131519;rank=5 scaffold_16 . exon 276584 276705 . + . ID=Physo131519.5;Parent=Physo131519;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 ensembl protein_coding_gene 276881 278393 . - . ID=Physo131520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160064;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 276881 278393 . - . ID=Physo131520;Parent=Physo131520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 276881 278142 . - 0 ID=Physo131520;Parent=Physo131520;rank=2 scaffold_16 . exon 276881 278142 . - . ID=Physo131520.2;Parent=Physo131520;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 278189 278393 . - 0 ID=Physo131520;Parent=Physo131520;rank=1 scaffold_16 . exon 278189 278393 . - . ID=Physo131520.1;Parent=Physo131520;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . biological_region 279621 279623 0.999 - . logic_name=eponine scaffold_16 . biological_region 281204 281205 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 279468 282668 . + . ID=Physo131521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160065;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 279468 282668 . + . ID=Physo131521;Parent=Physo131521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 279468 282668 . + 0 ID=Physo131521;Parent=Physo131521;rank=1 scaffold_16 . exon 279468 282668 . + . ID=Physo131521.1;Parent=Physo131521;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 283098 284348 . + . ID=Physo131522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160066;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 283098 284348 . + . ID=Physo131522;Parent=Physo131522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 283098 284348 . + 0 ID=Physo131522;Parent=Physo131522;rank=1 scaffold_16 . exon 283098 284348 . + . ID=Physo131522.1;Parent=Physo131522;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 284889 293543 . + . ID=Physo131523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160067;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 284889 293543 . + . ID=Physo131523;Parent=Physo131523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 284889 289726 . + 0 ID=Physo131523;Parent=Physo131523;rank=1 scaffold_16 . exon 284889 289726 . + . ID=Physo131523.1;Parent=Physo131523;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 289871 290069 . + 0 ID=Physo131523;Parent=Physo131523;rank=2 scaffold_16 . CDS 290358 293543 . + 0 ID=Physo131523;Parent=Physo131523;rank=3 scaffold_16 . exon 289871 290069 . + . ID=Physo131523.2;Parent=Physo131523;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . exon 290358 293543 . + . ID=Physo131523.3;Parent=Physo131523;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 293609 295969 . - . ID=Physo131524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160068;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 293609 295969 . - . ID=Physo131524;Parent=Physo131524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 293609 295969 . - 0 ID=Physo131524;Parent=Physo131524;rank=1 scaffold_16 . exon 293609 295969 . - . ID=Physo131524.1;Parent=Physo131524;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 297860 302656 . + . ID=Physo156301;biotype=protein_coding;external_name=C_scaffold_16000017;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 297860 302656 . + . ID=Physo156301;Parent=Physo156301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 297860 297884 . + 0 ID=Physo156301;Parent=Physo156301;rank=1 scaffold_16 . exon 297860 297884 . + . ID=Physo156301.1;Parent=Physo156301;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 297987 298082 . + 0 ID=Physo156301;Parent=Physo156301;rank=2 scaffold_16 . exon 297987 298082 . + . ID=Physo156301.2;Parent=Physo156301;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 298168 298238 . + 0 ID=Physo156301;Parent=Physo156301;rank=3 scaffold_16 . exon 298168 298238 . + . ID=Physo156301.3;Parent=Physo156301;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 298329 298436 . + 0 ID=Physo156301;Parent=Physo156301;rank=4 scaffold_16 . exon 298329 298436 . + . ID=Physo156301.4;Parent=Physo156301;constitutive=1;rank=4 scaffold_16 . CDS 298513 298557 . + 0 ID=Physo156301;Parent=Physo156301;rank=5 scaffold_16 . exon 298513 298557 . + . ID=Physo156301.5;Parent=Physo156301;constitutive=1;rank=5 scaffold_16 . CDS 298628 298892 . + 0 ID=Physo156301;Parent=Physo156301;rank=6 scaffold_16 . exon 298628 298892 . + . ID=Physo156301.6;Parent=Physo156301;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_16 . CDS 299061 299314 . + 0 ID=Physo156301;Parent=Physo156301;rank=7 scaffold_16 . CDS 299383 300373 . + 0 ID=Physo156301;Parent=Physo156301;rank=8 scaffold_16 . CDS 300446 301123 . + 0 ID=Physo156301;Parent=Physo156301;rank=9 scaffold_16 . CDS 301291 301867 . + 0 ID=Physo156301;Parent=Physo156301;rank=10 scaffold_16 . CDS 302371 302656 . + 0 ID=Physo156301;Parent=Physo156301;rank=11 scaffold_16 . repeat_region 303416 303424 . ? . description=dust scaffold_16 . repeat_region 305547 305638 . ? . description=dust scaffold_16 . repeat_region 306326 306421 . ? . description=trf scaffold_16 . exon 299061 299314 . + . ID=Physo156301.7;Parent=Physo156301;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 . exon 299383 300373 . + . ID=Physo156301.8;Parent=Physo156301;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_16 . exon 300446 301123 . + . ID=Physo156301.9;Parent=Physo156301;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_16 . exon 301291 301867 . + . ID=Physo156301.10;Parent=Physo156301;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_16 . exon 302371 302656 . + . ID=Physo156301.11;Parent=Physo156301;constitutive=1;ensembl_phase=2;rank=11 scaffold_16 . biological_region 315910 315910 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 315811 316567 . + . ID=Physo131526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160070;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 315811 316567 . + . ID=Physo131526;Parent=Physo131526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 315811 316443 . + 0 ID=Physo131526;Parent=Physo131526;rank=1 scaffold_16 . exon 315811 316567 . + . ID=Physo131526.1;Parent=Physo131526;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_16 . repeat_region 326190 326197 . ? . description=dust scaffold_16 ensembl protein_coding_gene 319438 320690 . + . ID=Physo131527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160071;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 319438 320690 . + . ID=Physo131527;Parent=Physo131527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 319438 320235 . + 0 ID=Physo131527;Parent=Physo131527;rank=1 scaffold_16 . exon 319438 320235 . + . ID=Physo131527.1;Parent=Physo131527;constitutive=1;rank=1 scaffold_16 . CDS 320306 320396 . + 0 ID=Physo131527;Parent=Physo131527;rank=2 scaffold_16 . exon 320306 320396 . + . ID=Physo131527.2;Parent=Physo131527;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 320470 320690 . + 0 ID=Physo131527;Parent=Physo131527;rank=3 scaffold_16 . exon 320470 320690 . + . ID=Physo131527.3;Parent=Physo131527;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 ensembl protein_coding_gene 321078 324146 . + . ID=Physo131528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160072;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 321078 324146 . + . ID=Physo131528;Parent=Physo131528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 321078 324146 . + 0 ID=Physo131528;Parent=Physo131528;rank=1 scaffold_16 . exon 321078 324146 . + . ID=Physo131528.1;Parent=Physo131528;constitutive=1;rank=1 scaffold_16 . biological_region 336480 336480 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 333865 337293 . + . ID=Physo131529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160073;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 333865 337293 . + . ID=Physo131529;Parent=Physo131529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 333865 335923 . + 0 ID=Physo131529;Parent=Physo131529;rank=1 scaffold_16 . exon 333865 335923 . + . ID=Physo131529.1;Parent=Physo131529;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 336203 337293 . + 0 ID=Physo131529;Parent=Physo131529;rank=2 scaffold_16 . exon 336203 337293 . + . ID=Physo131529.2;Parent=Physo131529;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 337916 338548 . + . ID=Physo131530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160074;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 337916 338548 . + . ID=Physo131530;Parent=Physo131530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 337916 338548 . + 0 ID=Physo131530;Parent=Physo131530;rank=1 scaffold_16 . exon 337916 338548 . + . ID=Physo131530.1;Parent=Physo131530;constitutive=1;rank=1 scaffold_16 . repeat_region 340582 340666 . ? . description=dust scaffold_16 . repeat_region 340922 340991 . ? . description=dust scaffold_16 ensembl tRNA_gene 340676 340758 . - . ID=EPrPSOG00000000256;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_16 ensembl transcript 340676 340758 . - . ID=EPrPSOT00000000256;Parent=EPrPSOG00000000256;biotype=tRNA;logic_name=ncrna_eg scaffold_16 . exon 340676 340758 . - . ID=EPrPSOE00000000256;Parent=EPrPSOT00000000256;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 347245 349286 . - . ID=Physo131531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160075;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 347245 349286 . - . ID=Physo131531;Parent=Physo131531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 347245 348908 . - 0 ID=Physo131531;Parent=Physo131531;rank=2 scaffold_16 . exon 347245 348908 . - . ID=Physo131531.2;Parent=Physo131531;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 348972 349011 . - 0 ID=Physo131531;Parent=Physo131531;rank=1 scaffold_16 . biological_region 348880 348882 0.999 - . logic_name=eponine scaffold_16 . biological_region 349860 349863 0.999 + . logic_name=eponine scaffold_16 . biological_region 349866 349867 0.999 + . logic_name=eponine scaffold_16 . biological_region 354210 354212 0.999 + . logic_name=eponine scaffold_16 . biological_region 355326 355329 0.999 - . logic_name=eponine scaffold_16 . repeat_region 355534 355572 . ? . description=trf scaffold_16 . biological_region 358033 358036 0.999 + . logic_name=eponine scaffold_16 . repeat_region 358262 358288 . ? . description=trf scaffold_16 . exon 348972 349286 . - . ID=Physo131531.1;Parent=Physo131531;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_16 ensembl protein_coding_gene 350875 352725 . + . ID=Physo131532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160076;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 350875 352725 . + . ID=Physo131532;Parent=Physo131532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 350875 351918 . + 0 ID=Physo131532;Parent=Physo131532;rank=1 scaffold_16 . exon 350875 351918 . + . ID=Physo131532.1;Parent=Physo131532;constitutive=1;rank=1 scaffold_16 . CDS 352057 352240 . + 0 ID=Physo131532;Parent=Physo131532;rank=2 scaffold_16 . exon 352057 352240 . + . ID=Physo131532.2;Parent=Physo131532;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 352308 352589 . + 0 ID=Physo131532;Parent=Physo131532;rank=3 scaffold_16 . exon 352308 352589 . + . ID=Physo131532.3;Parent=Physo131532;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 352676 352725 . + 0 ID=Physo131532;Parent=Physo131532;rank=4 scaffold_16 . exon 352676 352725 . + . ID=Physo131532.4;Parent=Physo131532;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 ensembl protein_coding_gene 355115 356653 . + . ID=Physo131533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160077;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 355115 356653 . + . ID=Physo131533;Parent=Physo131533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 355115 356653 . + 0 ID=Physo131533;Parent=Physo131533;rank=1 scaffold_16 . exon 355115 356653 . + . ID=Physo131533.1;Parent=Physo131533;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 356732 358369 . - . ID=Physo131534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160078;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 356732 358369 . - . ID=Physo131534;Parent=Physo131534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 356732 358369 . - . ID=Physo131534.1;Parent=Physo131534;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 357627 358019 . - 0 ID=Physo131534;Parent=Physo131534;rank=1 scaffold_16 ensembl protein_coding_gene 358622 361330 . + . ID=Physo131535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160079;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 358622 361330 . + . ID=Physo131535;Parent=Physo131535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 358622 359457 . + 0 ID=Physo131535;Parent=Physo131535;rank=1 scaffold_16 . exon 358622 359457 . + . ID=Physo131535.1;Parent=Physo131535;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 359534 361277 . + 0 ID=Physo131535;Parent=Physo131535;rank=2 scaffold_16 . repeat_region 364362 364369 . ? . description=dust scaffold_16 . exon 359534 361330 . + . ID=Physo131535.2;Parent=Physo131535;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_16 ensembl protein_coding_gene 361488 363750 . - . ID=Physo131536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160080;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 361488 363750 . - . ID=Physo131536;Parent=Physo131536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 361488 363750 . - . ID=Physo131536.1;Parent=Physo131536;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_16 . CDS 361525 363750 . - 0 ID=Physo131536;Parent=Physo131536;rank=1 scaffold_16 ensembl protein_coding_gene 364067 365332 . + . ID=Physo131537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160081;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 364067 365332 . + . ID=Physo131537;Parent=Physo131537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 364067 364335 . + 0 ID=Physo131537;Parent=Physo131537;rank=1 scaffold_16 . exon 364067 364335 . + . ID=Physo131537.1;Parent=Physo131537;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 364416 364613 . + 0 ID=Physo131537;Parent=Physo131537;rank=2 scaffold_16 . exon 364416 364613 . + . ID=Physo131537.2;Parent=Physo131537;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 364684 364744 . + 0 ID=Physo131537;Parent=Physo131537;rank=3 scaffold_16 . exon 364684 364744 . + . ID=Physo131537.3;Parent=Physo131537;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 364824 364946 . + 0 ID=Physo131537;Parent=Physo131537;rank=4 scaffold_16 . exon 364824 364946 . + . ID=Physo131537.4;Parent=Physo131537;constitutive=1;rank=4 scaffold_16 . CDS 365028 365201 . + 0 ID=Physo131537;Parent=Physo131537;rank=5 scaffold_16 . exon 365028 365332 . + . ID=Physo131537.5;Parent=Physo131537;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_16 . biological_region 373935 373940 0.999 + . logic_name=eponine scaffold_16 . biological_region 374071 374074 0.999 - . logic_name=eponine scaffold_16 . biological_region 376133 376135 0.999 - . logic_name=eponine scaffold_16 . biological_region 377285 377287 0.999 + . logic_name=eponine scaffold_16 . biological_region 377307 377310 0.999 + . logic_name=eponine scaffold_16 . biological_region 377782 377783 0.999 + . logic_name=eponine scaffold_16 . biological_region 377851 377852 0.999 + . logic_name=eponine scaffold_16 . repeat_region 378417 379782 . + . description=GypsyPi-1c_I-int scaffold_16 . biological_region 378640 378641 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 376996 380907 . + . ID=Physo131538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160082;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 376996 380907 . + . ID=Physo131538;Parent=Physo131538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 376996 377464 . + 0 ID=Physo131538;Parent=Physo131538;rank=1 scaffold_16 . exon 376996 377464 . + . ID=Physo131538.1;Parent=Physo131538;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 377760 377980 . + 0 ID=Physo131538;Parent=Physo131538;rank=2 scaffold_16 . exon 377760 377980 . + . ID=Physo131538.2;Parent=Physo131538;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 378064 378679 . + 0 ID=Physo131538;Parent=Physo131538;rank=3 scaffold_16 . exon 378064 378679 . + . ID=Physo131538.3;Parent=Physo131538;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 378736 379124 . + 0 ID=Physo131538;Parent=Physo131538;rank=4 scaffold_16 . exon 378736 379124 . + . ID=Physo131538.4;Parent=Physo131538;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 379183 379447 . + 0 ID=Physo131538;Parent=Physo131538;rank=5 scaffold_16 . CDS 379510 380860 . + 0 ID=Physo131538;Parent=Physo131538;rank=6 scaffold_16 . CDS 380901 380907 . + 0 ID=Physo131538;Parent=Physo131538;rank=7 scaffold_16 . repeat_region 380654 380770 . ? . description=trf scaffold_16 . repeat_region 386512 386519 . ? . description=dust scaffold_16 . repeat_region 387265 387292 . ? . description=trf scaffold_16 . exon 379183 379447 . + . ID=Physo131538.5;Parent=Physo131538;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_16 . exon 379510 380860 . + . ID=Physo131538.6;Parent=Physo131538;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_16 . exon 380901 380907 . + . ID=Physo131538.7;Parent=Physo131538;constitutive=1;ensembl_phase=2;rank=7 scaffold_16 ensembl protein_coding_gene 394694 395784 . - . ID=Physo131539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160083;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 394694 395784 . - . ID=Physo131539;Parent=Physo131539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 394694 394704 . - 0 ID=Physo131539;Parent=Physo131539;rank=5 scaffold_16 . exon 394694 394704 . - . ID=Physo131539.5;Parent=Physo131539;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 394779 395180 . - 0 ID=Physo131539;Parent=Physo131539;rank=4 scaffold_16 . exon 394779 395180 . - . ID=Physo131539.4;Parent=Physo131539;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 395252 395377 . - 0 ID=Physo131539;Parent=Physo131539;rank=3 scaffold_16 . exon 395252 395377 . - . ID=Physo131539.3;Parent=Physo131539;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 395482 395695 . - 0 ID=Physo131539;Parent=Physo131539;rank=2 scaffold_16 . exon 395482 395695 . - . ID=Physo131539.2;Parent=Physo131539;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 395725 395784 . - 0 ID=Physo131539;Parent=Physo131539;rank=1 scaffold_16 . exon 395725 395784 . - . ID=Physo131539.1;Parent=Physo131539;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 396824 397793 . - . ID=Physo131540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160084;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 396824 397793 . - . ID=Physo131540;Parent=Physo131540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 396824 397017 . - 0 ID=Physo131540;Parent=Physo131540;rank=2 scaffold_16 . exon 396824 397017 . - . ID=Physo131540.2;Parent=Physo131540;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 397526 397793 . - 0 ID=Physo131540;Parent=Physo131540;rank=1 scaffold_16 . exon 397526 397793 . - . ID=Physo131540.1;Parent=Physo131540;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . repeat_region 401089 401097 . ? . description=dust scaffold_16 . repeat_region 401760 401773 . ? . description=dust scaffold_16 . repeat_region 401849 401856 . ? . description=dust scaffold_16 . repeat_region 406853 406860 . ? . description=dust scaffold_16 . repeat_region 407018 407025 . ? . description=dust scaffold_16 . biological_region 408762 408762 0.999 + . logic_name=eponine scaffold_16 . biological_region 417031 417033 0.999 + . logic_name=eponine scaffold_16 . biological_region 417123 417126 0.999 - . logic_name=eponine scaffold_16 . biological_region 417152 417158 0.999 + . logic_name=eponine scaffold_16 . biological_region 417159 417159 0.999 - . logic_name=eponine scaffold_16 . biological_region 417175 417183 0.999 - . logic_name=eponine scaffold_16 . biological_region 417179 417182 0.999 + . logic_name=eponine scaffold_16 . biological_region 417190 417198 0.999 - . logic_name=eponine scaffold_16 . biological_region 417195 417202 0.999 + . logic_name=eponine scaffold_16 . biological_region 417218 417221 0.999 - . logic_name=eponine scaffold_16 . biological_region 417226 417229 0.999 - . logic_name=eponine scaffold_16 . biological_region 417231 417235 0.999 + . logic_name=eponine scaffold_16 . biological_region 417307 417309 0.999 - . logic_name=eponine scaffold_16 . biological_region 417332 417335 0.999 - . logic_name=eponine scaffold_16 . biological_region 417363 417367 0.999 + . logic_name=eponine scaffold_16 . biological_region 417386 417395 0.999 + . logic_name=eponine scaffold_16 . biological_region 417408 417411 0.999 + . logic_name=eponine scaffold_16 . biological_region 417475 417480 0.999 - . logic_name=eponine scaffold_16 . biological_region 417484 417491 0.999 + . logic_name=eponine scaffold_16 . biological_region 417504 417504 0.999 - . logic_name=eponine scaffold_16 . biological_region 417522 417528 0.999 - . logic_name=eponine scaffold_16 . biological_region 417529 417533 0.999 + . logic_name=eponine scaffold_16 . biological_region 417543 417547 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 411133 412632 . + . ID=Physo113704;biotype=protein_coding;external_name=estExt_Genewise1.C_160026;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 411133 412632 . + . ID=Physo113704;Parent=Physo113704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 411133 411934 . + . ID=Physo113704.1;Parent=Physo113704;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 411184 411934 . + 0 ID=Physo113704;Parent=Physo113704;rank=1 scaffold_16 . CDS 412205 412632 . + 0 ID=Physo113704;Parent=Physo113704;rank=2 scaffold_16 . exon 412205 412632 . + . ID=Physo113704.2;Parent=Physo113704;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 417066 420054 . + . ID=Physo131542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160086;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 417066 420054 . + . ID=Physo131542;Parent=Physo131542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 417066 420054 . + . ID=Physo131542.1;Parent=Physo131542;constitutive=1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 417079 420054 . + 0 ID=Physo131542;Parent=Physo131542;rank=1 scaffold_16 ensembl protein_coding_gene 422044 425970 . + . ID=Physo131543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160087;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 422044 425970 . + . ID=Physo131543;Parent=Physo131543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 422044 425970 . + 0 ID=Physo131543;Parent=Physo131543;rank=1 scaffold_16 . exon 422044 425970 . + . ID=Physo131543.1;Parent=Physo131543;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 427036 428027 . - . ID=Physo131544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160088;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 427036 428027 . - . ID=Physo131544;Parent=Physo131544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 427036 427055 . - 0 ID=Physo131544;Parent=Physo131544;rank=2 scaffold_16 . exon 427036 427055 . - . ID=Physo131544.2;Parent=Physo131544;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 427208 428027 . - 0 ID=Physo131544;Parent=Physo131544;rank=1 scaffold_16 . exon 427208 428027 . - . ID=Physo131544.1;Parent=Physo131544;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . repeat_region 432088 432095 . ? . description=dust scaffold_16 . repeat_region 433852 433862 . ? . description=dust scaffold_16 . biological_region 435458 435464 0.999 + . logic_name=eponine scaffold_16 . biological_region 435516 435519 0.999 + . logic_name=eponine scaffold_16 . biological_region 435519 435521 0.999 - . logic_name=eponine scaffold_16 . biological_region 435553 435558 0.999 - . logic_name=eponine scaffold_16 . biological_region 435580 435582 0.999 + . logic_name=eponine scaffold_16 . repeat_region 435736 435749 . ? . description=dust scaffold_16 . biological_region 436107 436115 0.999 - . logic_name=eponine scaffold_16 . biological_region 438228 438228 0.999 + . logic_name=eponine scaffold_16 . biological_region 438254 438256 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 431101 431900 . - . ID=Physo131545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160089;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 431101 431900 . - . ID=Physo131545;Parent=Physo131545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 431101 431453 . - 0 ID=Physo131545;Parent=Physo131545;rank=3 scaffold_16 . exon 431101 431453 . - . ID=Physo131545.3;Parent=Physo131545;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 431529 431636 . - 0 ID=Physo131545;Parent=Physo131545;rank=2 scaffold_16 . exon 431529 431636 . - . ID=Physo131545.2;Parent=Physo131545;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 431708 431900 . - 0 ID=Physo131545;Parent=Physo131545;rank=1 scaffold_16 . exon 431708 431900 . - . ID=Physo131545.1;Parent=Physo131545;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 432371 433300 . - . ID=Physo131546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160090;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 432371 433300 . - . ID=Physo131546;Parent=Physo131546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 432371 432812 . - . ID=Physo131546.3;Parent=Physo131546;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_16 . CDS 432460 432812 . - 0 ID=Physo131546;Parent=Physo131546;rank=3 scaffold_16 . CDS 432896 433003 . - 0 ID=Physo131546;Parent=Physo131546;rank=2 scaffold_16 . exon 432896 433003 . - . ID=Physo131546.2;Parent=Physo131546;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 433072 433252 . - 0 ID=Physo131546;Parent=Physo131546;rank=1 scaffold_16 . exon 433072 433300 . - . ID=Physo131546.1;Parent=Physo131546;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_16 ensembl protein_coding_gene 438109 440325 . + . ID=Physo131550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160094;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 438109 440325 . + . ID=Physo131550;Parent=Physo131550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 438109 439151 . + 0 ID=Physo131550;Parent=Physo131550;rank=1 scaffold_16 . exon 438109 439151 . + . ID=Physo131550.1;Parent=Physo131550;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 439234 439329 . + 0 ID=Physo131550;Parent=Physo131550;rank=2 scaffold_16 . CDS 439419 440325 . + 0 ID=Physo131550;Parent=Physo131550;rank=3 scaffold_16 ensembl protein_coding_gene 434028 437925 . - . ID=Physo156303;biotype=protein_coding;external_name=C_scaffold_16000019;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 434028 437925 . - . ID=Physo156303;Parent=Physo156303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 434028 434380 . - 0 ID=Physo156303;Parent=Physo156303;rank=11 scaffold_16 . exon 434028 434380 . - . ID=Physo156303.11;Parent=Physo156303;constitutive=1;ensembl_phase=1;rank=11 scaffold_16 . CDS 434646 434758 . - 0 ID=Physo156303;Parent=Physo156303;rank=10 scaffold_16 . exon 434646 434758 . - . ID=Physo156303.10;Parent=Physo156303;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_16 . CDS 435329 435677 . - 0 ID=Physo156303;Parent=Physo156303;rank=9 scaffold_16 . exon 435329 435677 . - . ID=Physo156303.9;Parent=Physo156303;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_16 . CDS 435755 435862 . - 0 ID=Physo156303;Parent=Physo156303;rank=8 scaffold_16 . exon 435755 435862 . - . ID=Physo156303.8;Parent=Physo156303;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_16 . CDS 435937 436113 . - 0 ID=Physo156303;Parent=Physo156303;rank=7 scaffold_16 . exon 435937 436113 . - . ID=Physo156303.7;Parent=Physo156303;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_16 . CDS 436371 436620 . - 0 ID=Physo156303;Parent=Physo156303;rank=6 scaffold_16 . exon 436371 436620 . - . ID=Physo156303.6;Parent=Physo156303;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_16 . CDS 436694 437145 . - 0 ID=Physo156303;Parent=Physo156303;rank=5 scaffold_16 . exon 436694 437145 . - . ID=Physo156303.5;Parent=Physo156303;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 437209 437340 . - 0 ID=Physo156303;Parent=Physo156303;rank=4 scaffold_16 . exon 437209 437340 . - . ID=Physo156303.4;Parent=Physo156303;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 437417 437479 . - 0 ID=Physo156303;Parent=Physo156303;rank=3 scaffold_16 . exon 437417 437479 . - . ID=Physo156303.3;Parent=Physo156303;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 437542 437776 . - 0 ID=Physo156303;Parent=Physo156303;rank=2 scaffold_16 . exon 437542 437776 . - . ID=Physo156303.2;Parent=Physo156303;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 437839 437925 . - 0 ID=Physo156303;Parent=Physo156303;rank=1 scaffold_16 . exon 437839 437925 . - . ID=Physo156303.1;Parent=Physo156303;constitutive=1;rank=1 scaffold_16 . repeat_region 441408 441450 . ? . description=trf scaffold_16 . repeat_region 441416 441464 . ? . description=trf scaffold_16 . repeat_region 447912 447966 . ? . description=trf scaffold_16 . repeat_region 447926 447997 . ? . description=trf scaffold_16 . exon 439234 439329 . + . ID=Physo131550.2;Parent=Physo131550;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . exon 439419 440325 . + . ID=Physo131550.3;Parent=Physo131550;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 ensembl protein_coding_gene 441282 443675 . + . ID=Physo131551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160095;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 441282 443675 . + . ID=Physo131551;Parent=Physo131551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 441282 443675 . + 0 ID=Physo131551;Parent=Physo131551;rank=1 scaffold_16 . exon 441282 443675 . + . ID=Physo131551.1;Parent=Physo131551;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 444763 449771 . + . ID=Physo131552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160096;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 444763 449771 . + . ID=Physo131552;Parent=Physo131552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 444763 446610 . + 0 ID=Physo131552;Parent=Physo131552;rank=1 scaffold_16 . exon 444763 446610 . + . ID=Physo131552.1;Parent=Physo131552;constitutive=1;rank=1 scaffold_16 . CDS 446788 447227 . + 0 ID=Physo131552;Parent=Physo131552;rank=2 scaffold_16 . exon 446788 447227 . + . ID=Physo131552.2;Parent=Physo131552;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 447542 448290 . + 0 ID=Physo131552;Parent=Physo131552;rank=3 scaffold_16 . exon 447542 448290 . + . ID=Physo131552.3;Parent=Physo131552;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 448429 449114 . + 0 ID=Physo131552;Parent=Physo131552;rank=4 scaffold_16 . exon 448429 449114 . + . ID=Physo131552.4;Parent=Physo131552;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 449277 449771 . + 0 ID=Physo131552;Parent=Physo131552;rank=5 scaffold_16 ensembl protein_coding_gene 443919 444648 . - . ID=Physo156305;biotype=protein_coding;external_name=C_scaffold_16000021;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 443919 444648 . - . ID=Physo156305;Parent=Physo156305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 443919 444104 . - 0 ID=Physo156305;Parent=Physo156305;rank=5 scaffold_16 . exon 443919 444104 . - . ID=Physo156305.5;Parent=Physo156305;constitutive=1;rank=5 scaffold_16 . CDS 444190 444243 . - 0 ID=Physo156305;Parent=Physo156305;rank=4 scaffold_16 . exon 444190 444243 . - . ID=Physo156305.4;Parent=Physo156305;constitutive=1;rank=4 scaffold_16 . CDS 444322 444391 . - 0 ID=Physo156305;Parent=Physo156305;rank=3 scaffold_16 . exon 444322 444391 . - . ID=Physo156305.3;Parent=Physo156305;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 444471 444507 . - 0 ID=Physo156305;Parent=Physo156305;rank=2 scaffold_16 . exon 444471 444507 . - . ID=Physo156305.2;Parent=Physo156305;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 444576 444648 . - 0 ID=Physo156305;Parent=Physo156305;rank=1 scaffold_16 . exon 444576 444648 . - . ID=Physo156305.1;Parent=Physo156305;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . biological_region 449341 449345 0.999 + . logic_name=eponine scaffold_16 . exon 449277 449771 . + . ID=Physo131552.5;Parent=Physo131552;constitutive=1;rank=5 scaffold_16 ensembl protein_coding_gene 451088 451531 . + . ID=Physo131554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160098;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 451088 451531 . + . ID=Physo131554;Parent=Physo131554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 451088 451531 . + 0 ID=Physo131554;Parent=Physo131554;rank=1 scaffold_16 . exon 451088 451531 . + . ID=Physo131554.1;Parent=Physo131554;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 452180 454423 . - . ID=Physo131555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160099;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 452180 454423 . - . ID=Physo131555;Parent=Physo131555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 452180 453004 . - 0 ID=Physo131555;Parent=Physo131555;rank=4 scaffold_16 . exon 452180 453004 . - . ID=Physo131555.4;Parent=Physo131555;constitutive=1;rank=4 scaffold_16 . CDS 453093 453253 . - 0 ID=Physo131555;Parent=Physo131555;rank=3 scaffold_16 . exon 453093 453253 . - . ID=Physo131555.3;Parent=Physo131555;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 453694 454312 . - 0 ID=Physo131555;Parent=Physo131555;rank=2 scaffold_16 . exon 453694 454312 . - . ID=Physo131555.2;Parent=Physo131555;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 454343 454423 . - 0 ID=Physo131555;Parent=Physo131555;rank=1 scaffold_16 . exon 454343 454423 . - . ID=Physo131555.1;Parent=Physo131555;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 449944 450429 . - . ID=Physo156308;biotype=protein_coding;external_name=C_scaffold_16000024;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 449944 450429 . - . ID=Physo156308;Parent=Physo156308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 449944 450429 . - 0 ID=Physo156308;Parent=Physo156308;rank=1 scaffold_16 . exon 449944 450429 . - . ID=Physo156308.1;Parent=Physo156308;constitutive=1;rank=1 scaffold_16 . repeat_region 460939 461153 . + . description=GypsyPi-1c_LTR scaffold_16 . repeat_region 466123 466268 . + . description=Polinton-1_PI scaffold_16 ensembl protein_coding_gene 463384 465936 . - . ID=Physo131556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160100;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 463384 465936 . - . ID=Physo131556;Parent=Physo131556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 463384 465936 . - 0 ID=Physo131556;Parent=Physo131556;rank=1 scaffold_16 . exon 463384 465936 . - . ID=Physo131556.1;Parent=Physo131556;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 466924 470023 . - . ID=Physo131557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160101;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 466924 470023 . - . ID=Physo131557;Parent=Physo131557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 466924 469388 . - 0 ID=Physo131557;Parent=Physo131557;rank=4 scaffold_16 . exon 466924 469388 . - . ID=Physo131557.4;Parent=Physo131557;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 469460 469633 . - 0 ID=Physo131557;Parent=Physo131557;rank=3 scaffold_16 . CDS 469706 469871 . - 0 ID=Physo131557;Parent=Physo131557;rank=2 scaffold_16 . CDS 469949 470023 . - 0 ID=Physo131557;Parent=Physo131557;rank=1 scaffold_16 . biological_region 473155 473158 0.999 + . logic_name=eponine scaffold_16 . repeat_region 474152 474196 . ? . description=trf scaffold_16 . repeat_region 475574 491989 . ? . description=dust scaffold_16 . exon 469460 469633 . - . ID=Physo131557.3;Parent=Physo131557;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . exon 469706 469871 . - . ID=Physo131557.2;Parent=Physo131557;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . exon 469949 470023 . - . ID=Physo131557.1;Parent=Physo131557;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 470798 473783 . + . ID=Physo131558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160102;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 470798 473783 . + . ID=Physo131558;Parent=Physo131558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 470798 470875 . + 0 ID=Physo131558;Parent=Physo131558;rank=1 scaffold_16 . exon 470798 470875 . + . ID=Physo131558.1;Parent=Physo131558;constitutive=1;rank=1 scaffold_16 . CDS 470967 473783 . + 0 ID=Physo131558;Parent=Physo131558;rank=2 scaffold_16 . exon 470967 473783 . + . ID=Physo131558.2;Parent=Physo131558;constitutive=1;rank=2 scaffold_16 . repeat_region 475574 491989 . ? . description=dust scaffold_16 . repeat_region 492801 492815 . ? . description=dust scaffold_16 . repeat_region 493533 493568 . ? . description=trf scaffold_16 . biological_region 493823 493824 0.999 - . logic_name=eponine scaffold_16 . repeat_region 493829 493854 . ? . description=trf scaffold_16 . biological_region 493844 493850 0.999 + . logic_name=eponine scaffold_16 . biological_region 493906 493912 0.999 + . logic_name=eponine scaffold_16 . biological_region 493945 493950 0.999 - . logic_name=eponine scaffold_16 . biological_region 493966 493972 0.999 - . logic_name=eponine scaffold_16 . biological_region 494001 494003 0.999 + . logic_name=eponine scaffold_16 . biological_region 494085 494087 0.999 - . logic_name=eponine scaffold_16 . biological_region 494310 494313 0.999 - . logic_name=eponine scaffold_16 . biological_region 494364 494371 0.999 + . logic_name=eponine scaffold_16 . biological_region 494368 494373 0.999 - . logic_name=eponine scaffold_16 . biological_region 494379 494385 0.999 - . logic_name=eponine scaffold_16 . repeat_region 494612 494624 . ? . description=dust scaffold_16 . repeat_region 495565 495588 . ? . description=trf scaffold_16 . biological_region 496558 496563 0.999 - . logic_name=eponine scaffold_16 . biological_region 497462 497463 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 496159 496910 . + . ID=Physo131559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160103;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 496159 496910 . + . ID=Physo131559;Parent=Physo131559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 496159 496910 . + . ID=Physo131559.1;Parent=Physo131559;constitutive=1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 496182 496910 . + 0 ID=Physo131559;Parent=Physo131559;rank=1 scaffold_16 . repeat_region 507823 508416 . - . description=GypsyPi-1c_I-int scaffold_16 ensembl protein_coding_gene 498436 499857 . + . ID=Physo131560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160104;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 498436 499857 . + . ID=Physo131560;Parent=Physo131560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 498436 499857 . + 0 ID=Physo131560;Parent=Physo131560;rank=1 scaffold_16 . exon 498436 499857 . + . ID=Physo131560.1;Parent=Physo131560;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 500085 501209 . - . ID=Physo131561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160105;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 500085 501209 . - . ID=Physo131561;Parent=Physo131561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 500085 501209 . - 0 ID=Physo131561;Parent=Physo131561;rank=1 scaffold_16 . exon 500085 501209 . - . ID=Physo131561.1;Parent=Physo131561;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 505433 508274 . - . ID=Physo131562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160106;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 505433 508274 . - . ID=Physo131562;Parent=Physo131562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 505433 505765 . - 0 ID=Physo131562;Parent=Physo131562;rank=4 scaffold_16 . exon 505433 505765 . - . ID=Physo131562.4;Parent=Physo131562;constitutive=1;rank=4 scaffold_16 . CDS 506532 506565 . - 0 ID=Physo131562;Parent=Physo131562;rank=3 scaffold_16 . exon 506532 506565 . - . ID=Physo131562.3;Parent=Physo131562;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 506691 507497 . - 0 ID=Physo131562;Parent=Physo131562;rank=2 scaffold_16 . exon 506691 507497 . - . ID=Physo131562.2;Parent=Physo131562;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 507718 508274 . - 0 ID=Physo131562;Parent=Physo131562;rank=1 scaffold_16 . exon 507718 508274 . - . ID=Physo131562.1;Parent=Physo131562;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . biological_region 509336 509337 0.999 + . logic_name=eponine scaffold_16 . biological_region 509402 509412 0.999 - . logic_name=eponine scaffold_16 . repeat_region 513488 513563 . ? . description=trf scaffold_16 . biological_region 514047 514049 0.999 - . logic_name=eponine scaffold_16 . repeat_region 514317 514581 . ? . description=trf scaffold_16 . biological_region 514421 514421 0.999 - . logic_name=eponine scaffold_16 . biological_region 516797 516798 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 509169 509944 . + . ID=Physo131563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160107;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 509169 509944 . + . ID=Physo131563;Parent=Physo131563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 509169 509223 . + 0 ID=Physo131563;Parent=Physo131563;rank=1 scaffold_16 . exon 509169 509223 . + . ID=Physo131563.1;Parent=Physo131563;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 509310 509944 . + 0 ID=Physo131563;Parent=Physo131563;rank=2 scaffold_16 . exon 509310 509944 . + . ID=Physo131563.2;Parent=Physo131563;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 510329 520532 . - . ID=Physo131564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160108;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 510329 520532 . - . ID=Physo131564;Parent=Physo131564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 510329 510613 . - 0 ID=Physo131564;Parent=Physo131564;rank=18 scaffold_16 . exon 510329 510613 . - . ID=Physo131564.18;Parent=Physo131564;constitutive=1;rank=18 scaffold_16 . CDS 510681 510949 . - 0 ID=Physo131564;Parent=Physo131564;rank=17 scaffold_16 . exon 510681 510949 . - . ID=Physo131564.17;Parent=Physo131564;constitutive=1;ensembl_phase=1;rank=17 scaffold_16 . CDS 511405 513202 . - 0 ID=Physo131564;Parent=Physo131564;rank=16 scaffold_16 . exon 511405 513202 . - . ID=Physo131564.16;Parent=Physo131564;constitutive=1;ensembl_end_phase=1;rank=16 scaffold_16 . CDS 513353 513366 . - 0 ID=Physo131564;Parent=Physo131564;rank=15 scaffold_16 . exon 513353 513366 . - . ID=Physo131564.15;Parent=Physo131564;constitutive=1;ensembl_phase=1;rank=15 scaffold_16 . CDS 513577 513649 . - 0 ID=Physo131564;Parent=Physo131564;rank=14 scaffold_16 . exon 513577 513649 . - . ID=Physo131564.14;Parent=Physo131564;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_16 . CDS 513766 513958 . - 0 ID=Physo131564;Parent=Physo131564;rank=13 scaffold_16 . exon 513766 513958 . - . ID=Physo131564.13;Parent=Physo131564;constitutive=1;ensembl_phase=2;rank=13 scaffold_16 . CDS 513982 514204 . - 0 ID=Physo131564;Parent=Physo131564;rank=12 scaffold_16 . exon 513982 514204 . - . ID=Physo131564.12;Parent=Physo131564;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_16 . CDS 514330 514702 . - 0 ID=Physo131564;Parent=Physo131564;rank=11 scaffold_16 . exon 514330 514702 . - . ID=Physo131564.11;Parent=Physo131564;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_16 . CDS 514894 514995 . - 0 ID=Physo131564;Parent=Physo131564;rank=10 scaffold_16 . exon 514894 514995 . - . ID=Physo131564.10;Parent=Physo131564;constitutive=1;rank=10 scaffold_16 . CDS 515261 515457 . - 0 ID=Physo131564;Parent=Physo131564;rank=9 scaffold_16 . exon 515261 515457 . - . ID=Physo131564.9;Parent=Physo131564;constitutive=1;ensembl_phase=1;rank=9 scaffold_16 . CDS 515850 516232 . - 0 ID=Physo131564;Parent=Physo131564;rank=8 scaffold_16 . exon 515850 516232 . - . ID=Physo131564.8;Parent=Physo131564;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_16 . CDS 516386 516398 . - 0 ID=Physo131564;Parent=Physo131564;rank=7 scaffold_16 . exon 516386 516398 . - . ID=Physo131564.7;Parent=Physo131564;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_16 . CDS 516630 516832 . - 0 ID=Physo131564;Parent=Physo131564;rank=6 scaffold_16 . exon 516630 516832 . - . ID=Physo131564.6;Parent=Physo131564;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_16 . CDS 516857 517947 . - 0 ID=Physo131564;Parent=Physo131564;rank=5 scaffold_16 . exon 516857 517947 . - . ID=Physo131564.5;Parent=Physo131564;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_16 . CDS 517996 518930 . - 0 ID=Physo131564;Parent=Physo131564;rank=4 scaffold_16 . exon 517996 518930 . - . ID=Physo131564.4;Parent=Physo131564;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 518989 519275 . - 0 ID=Physo131564;Parent=Physo131564;rank=3 scaffold_16 . CDS 519485 519610 . - 0 ID=Physo131564;Parent=Physo131564;rank=2 scaffold_16 . CDS 519955 520532 . - 0 ID=Physo131564;Parent=Physo131564;rank=1 scaffold_16 . repeat_region 517044 518379 . - . description=GypsyPi-1c_I-int scaffold_16 . repeat_region 521087 521101 . ? . description=dust scaffold_16 . repeat_region 522292 522308 . ? . description=dust scaffold_16 . repeat_region 523943 523958 . ? . description=dust scaffold_16 . repeat_region 525080 525098 . ? . description=dust scaffold_16 . repeat_region 525989 526002 . ? . description=dust scaffold_16 . exon 518989 519275 . - . ID=Physo131564.3;Parent=Physo131564;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . exon 519485 519610 . - . ID=Physo131564.2;Parent=Physo131564;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . exon 519955 520532 . - . ID=Physo131564.1;Parent=Physo131564;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . biological_region 530192 530195 0.999 + . logic_name=eponine scaffold_16 . biological_region 531097 531101 0.999 + . logic_name=eponine scaffold_16 . biological_region 537456 537459 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 530157 531283 . + . ID=Physo131565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160109;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 530157 531283 . + . ID=Physo131565;Parent=Physo131565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 530157 530183 . + 0 ID=Physo131565;Parent=Physo131565;rank=1 scaffold_16 . exon 530157 530183 . + . ID=Physo131565.1;Parent=Physo131565;constitutive=1;rank=1 scaffold_16 . CDS 530283 530387 . + 0 ID=Physo131565;Parent=Physo131565;rank=2 scaffold_16 . exon 530283 530387 . + . ID=Physo131565.2;Parent=Physo131565;constitutive=1;rank=2 scaffold_16 . CDS 530534 530925 . + 0 ID=Physo131565;Parent=Physo131565;rank=3 scaffold_16 . exon 530534 530925 . + . ID=Physo131565.3;Parent=Physo131565;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 530982 531067 . + 0 ID=Physo131565;Parent=Physo131565;rank=4 scaffold_16 . exon 530982 531067 . + . ID=Physo131565.4;Parent=Physo131565;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 531246 531283 . + 0 ID=Physo131565;Parent=Physo131565;rank=5 scaffold_16 . exon 531246 531283 . + . ID=Physo131565.5;Parent=Physo131565;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 . repeat_region 539279 539320 . ? . description=dust scaffold_16 . repeat_region 542328 542344 . ? . description=dust scaffold_16 . repeat_region 544803 544828 . ? . description=dust scaffold_16 . repeat_region 546039 546055 . ? . description=dust scaffold_16 . repeat_region 547228 547235 . ? . description=dust scaffold_16 ensembl protein_coding_gene 547625 549231 . + . ID=Physo108567;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160006;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 547625 549231 . + . ID=Physo108567;Parent=Physo108567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 547625 547864 . + . ID=Physo108567.1;Parent=Physo108567;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_16 . CDS 547629 547864 . + 0 ID=Physo108567;Parent=Physo108567;rank=1 scaffold_16 . CDS 547933 548022 . + 0 ID=Physo108567;Parent=Physo108567;rank=2 scaffold_16 . exon 547933 548022 . + . ID=Physo108567.2;Parent=Physo108567;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 548095 549154 . + 0 ID=Physo108567;Parent=Physo108567;rank=3 scaffold_16 . exon 548095 549231 . + . ID=Physo108567.3;Parent=Physo108567;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_16 . biological_region 550338 550339 0.999 - . logic_name=eponine scaffold_16 . repeat_region 551429 551471 . ? . description=trf scaffold_16 ensembl protein_coding_gene 549341 550726 . - . ID=Physo131567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160111;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 549341 550726 . - . ID=Physo131567;Parent=Physo131567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 549341 550627 . - 0 ID=Physo131567;Parent=Physo131567;rank=2 scaffold_16 . exon 549341 550627 . - . ID=Physo131567.2;Parent=Physo131567;constitutive=1;rank=2 scaffold_16 . CDS 550706 550726 . - 0 ID=Physo131567;Parent=Physo131567;rank=1 scaffold_16 . exon 550706 550726 . - . ID=Physo131567.1;Parent=Physo131567;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 550948 551641 . + . ID=Physo131568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160112;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 550948 551641 . + . ID=Physo131568;Parent=Physo131568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 550948 551641 . + . ID=Physo131568.1;Parent=Physo131568;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 551088 551459 . + 0 ID=Physo131568;Parent=Physo131568;rank=1 scaffold_16 ensembl protein_coding_gene 557904 559232 . - . ID=Physo131569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160113;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 557904 559232 . - . ID=Physo131569;Parent=Physo131569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 557904 559232 . - 0 ID=Physo131569;Parent=Physo131569;rank=1 scaffold_16 . exon 557904 559232 . - . ID=Physo131569.1;Parent=Physo131569;constitutive=1;rank=1 scaffold_16 . repeat_region 559476 559483 . ? . description=dust scaffold_16 . repeat_region 562152 562262 . - . description=LSU-rRNA_Hca scaffold_16 . repeat_region 562519 562531 . ? . description=dust scaffold_16 . repeat_region 568013 568021 . ? . description=dust scaffold_16 ensembl protein_coding_gene 559492 560998 . + . ID=Physo131570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160114;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 559492 560998 . + . ID=Physo131570;Parent=Physo131570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 559492 560359 . + 0 ID=Physo131570;Parent=Physo131570;rank=1 scaffold_16 . exon 559492 560359 . + . ID=Physo131570.1;Parent=Physo131570;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 560657 560803 . + 0 ID=Physo131570;Parent=Physo131570;rank=2 scaffold_16 . exon 560657 560803 . + . ID=Physo131570.2;Parent=Physo131570;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 560934 560998 . + 0 ID=Physo131570;Parent=Physo131570;rank=3 scaffold_16 . exon 560934 560998 . + . ID=Physo131570.3;Parent=Physo131570;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 ensembl protein_coding_gene 562547 566795 . - . ID=Physo131571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160115;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 562547 566795 . - . ID=Physo131571;Parent=Physo131571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 562547 562564 . - 0 ID=Physo131571;Parent=Physo131571;rank=7 scaffold_16 . exon 562547 562564 . - . ID=Physo131571.7;Parent=Physo131571;constitutive=1;rank=7 scaffold_16 . CDS 563019 563042 . - 0 ID=Physo131571;Parent=Physo131571;rank=6 scaffold_16 . exon 563019 563042 . - . ID=Physo131571.6;Parent=Physo131571;constitutive=1;rank=6 scaffold_16 . CDS 563139 563148 . - 0 ID=Physo131571;Parent=Physo131571;rank=5 scaffold_16 . exon 563139 563148 . - . ID=Physo131571.5;Parent=Physo131571;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 563484 564385 . - 0 ID=Physo131571;Parent=Physo131571;rank=4 scaffold_16 . exon 563484 564385 . - . ID=Physo131571.4;Parent=Physo131571;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 564420 564578 . - 0 ID=Physo131571;Parent=Physo131571;rank=3 scaffold_16 . exon 564420 564578 . - . ID=Physo131571.3;Parent=Physo131571;constitutive=1;rank=3 scaffold_16 . CDS 564775 565921 . - 0 ID=Physo131571;Parent=Physo131571;rank=2 scaffold_16 . exon 564775 565921 . - . ID=Physo131571.2;Parent=Physo131571;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 565996 566795 . - 0 ID=Physo131571;Parent=Physo131571;rank=1 scaffold_16 . exon 565996 566795 . - . ID=Physo131571.1;Parent=Physo131571;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . biological_region 570367 570368 0.999 - . logic_name=eponine scaffold_16 . biological_region 570409 570410 0.999 - . logic_name=eponine scaffold_16 . biological_region 571467 571470 0.999 + . logic_name=eponine scaffold_16 . biological_region 571596 571605 0.999 - . logic_name=eponine scaffold_16 . biological_region 571602 571604 0.999 + . logic_name=eponine scaffold_16 . biological_region 574017 574017 0.999 - . logic_name=eponine scaffold_16 . biological_region 577111 577116 0.999 - . logic_name=eponine scaffold_16 . repeat_region 577495 577547 . ? . description=trf scaffold_16 ensembl protein_coding_gene 570833 574297 . - . ID=Physo108568;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160007;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 570833 574297 . - . ID=Physo108568;Parent=Physo108568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 570833 570895 . - 0 ID=Physo108568;Parent=Physo108568;rank=4 scaffold_16 . exon 570833 570895 . - . ID=Physo108568.4;Parent=Physo108568;constitutive=1;rank=4 scaffold_16 . CDS 571183 571183 . - 0 ID=Physo108568;Parent=Physo108568;rank=3 scaffold_16 . exon 571183 571183 . - . ID=Physo108568.3;Parent=Physo108568;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 571488 571964 . - 0 ID=Physo108568;Parent=Physo108568;rank=2 scaffold_16 . exon 571488 571964 . - . ID=Physo108568.2;Parent=Physo108568;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 571995 574297 . - 0 ID=Physo108568;Parent=Physo108568;rank=1 scaffold_16 . exon 571995 574297 . - . ID=Physo108568.1;Parent=Physo108568;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 569467 570465 . - . ID=Physo131572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160116;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 569467 570465 . - . ID=Physo131572;Parent=Physo131572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 569467 569663 . - 0 ID=Physo131572;Parent=Physo131572;rank=3 scaffold_16 . exon 569467 569663 . - . ID=Physo131572.3;Parent=Physo131572;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 569865 570147 . - 0 ID=Physo131572;Parent=Physo131572;rank=2 scaffold_16 . exon 569865 570147 . - . ID=Physo131572.2;Parent=Physo131572;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 570211 570465 . - 0 ID=Physo131572;Parent=Physo131572;rank=1 scaffold_16 . exon 570211 570465 . - . ID=Physo131572.1;Parent=Physo131572;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 579090 581316 . + . ID=Physo131574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160118;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 579090 581316 . + . ID=Physo131574;Parent=Physo131574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 579090 579114 . + 0 ID=Physo131574;Parent=Physo131574;rank=1 scaffold_16 . exon 579090 579114 . + . ID=Physo131574.1;Parent=Physo131574;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 579194 581316 . + 0 ID=Physo131574;Parent=Physo131574;rank=2 scaffold_16 . exon 579194 581316 . + . ID=Physo131574.2;Parent=Physo131574;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 581639 582712 . + . ID=Physo131575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160119;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 581639 582712 . + . ID=Physo131575;Parent=Physo131575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 581639 581830 . + . ID=Physo131575.1;Parent=Physo131575;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_16 . CDS 581652 581830 . + 0 ID=Physo131575;Parent=Physo131575;rank=1 scaffold_16 . CDS 581916 582065 . + 0 ID=Physo131575;Parent=Physo131575;rank=2 scaffold_16 . exon 581916 582065 . + . ID=Physo131575.2;Parent=Physo131575;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 582134 582521 . + 0 ID=Physo131575;Parent=Physo131575;rank=3 scaffold_16 . exon 582134 582521 . + . ID=Physo131575.3;Parent=Physo131575;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 582612 582665 . + 0 ID=Physo131575;Parent=Physo131575;rank=4 scaffold_16 . exon 582612 582712 . + . ID=Physo131575.4;Parent=Physo131575;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_16 ensembl protein_coding_gene 582850 593568 . - . ID=Physo156310;biotype=protein_coding;external_name=C_scaffold_16000026;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 582850 593568 . - . ID=Physo156310;Parent=Physo156310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 582850 587312 . - 0 ID=Physo156310;Parent=Physo156310;rank=13 scaffold_16 . exon 582850 587312 . - . ID=Physo156310.13;Parent=Physo156310;constitutive=1;ensembl_phase=1;rank=13 scaffold_16 . CDS 587610 587827 . - 0 ID=Physo156310;Parent=Physo156310;rank=12 scaffold_16 . exon 587610 587827 . - . ID=Physo156310.12;Parent=Physo156310;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_16 . CDS 587849 587972 . - 0 ID=Physo156310;Parent=Physo156310;rank=11 scaffold_16 . exon 587849 587972 . - . ID=Physo156310.11;Parent=Physo156310;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_16 . CDS 587997 588083 . - 0 ID=Physo156310;Parent=Physo156310;rank=10 scaffold_16 . exon 587997 588083 . - . ID=Physo156310.10;Parent=Physo156310;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_16 . CDS 588132 588355 . - 0 ID=Physo156310;Parent=Physo156310;rank=9 scaffold_16 . CDS 588479 590220 . - 0 ID=Physo156310;Parent=Physo156310;rank=8 scaffold_16 . CDS 590758 591011 . - 0 ID=Physo156310;Parent=Physo156310;rank=7 scaffold_16 . CDS 591045 591122 . - 0 ID=Physo156310;Parent=Physo156310;rank=6 scaffold_16 . CDS 591171 591338 . - 0 ID=Physo156310;Parent=Physo156310;rank=5 scaffold_16 . CDS 591597 592102 . - 0 ID=Physo156310;Parent=Physo156310;rank=4 scaffold_16 . CDS 592145 592855 . - 0 ID=Physo156310;Parent=Physo156310;rank=3 scaffold_16 . CDS 592892 593129 . - 0 ID=Physo156310;Parent=Physo156310;rank=2 scaffold_16 . CDS 593163 593568 . - 0 ID=Physo156310;Parent=Physo156310;rank=1 scaffold_16 . biological_region 592304 592304 0.999 - . logic_name=eponine scaffold_16 . biological_region 592783 592788 0.999 - . logic_name=eponine scaffold_16 . repeat_region 593126 593151 . ? . description=trf scaffold_16 ensembl protein_coding_gene 594915 598998 . + . ID=Physo131577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160121;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 594915 598998 . + . ID=Physo131577;Parent=Physo131577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 594915 595296 . + 0 ID=Physo131577;Parent=Physo131577;rank=1 scaffold_16 . exon 594915 595296 . + . ID=Physo131577.1;Parent=Physo131577;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 595335 596452 . + 0 ID=Physo131577;Parent=Physo131577;rank=2 scaffold_16 . exon 595335 596452 . + . ID=Physo131577.2;Parent=Physo131577;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 596478 597981 . + 0 ID=Physo131577;Parent=Physo131577;rank=3 scaffold_16 . exon 596478 597981 . + . ID=Physo131577.3;Parent=Physo131577;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_16 . CDS 598026 598349 . + 0 ID=Physo131577;Parent=Physo131577;rank=4 scaffold_16 . CDS 598472 598998 . + 0 ID=Physo131577;Parent=Physo131577;rank=5 scaffold_16 . exon 588132 588355 . - . ID=Physo156310.9;Parent=Physo156310;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_16 . exon 588479 590220 . - . ID=Physo156310.8;Parent=Physo156310;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_16 . exon 590758 591011 . - . ID=Physo156310.7;Parent=Physo156310;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 . exon 591045 591122 . - . ID=Physo156310.6;Parent=Physo156310;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_16 . exon 591171 591338 . - . ID=Physo156310.5;Parent=Physo156310;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_16 . exon 591597 592102 . - . ID=Physo156310.4;Parent=Physo156310;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_16 . exon 592145 592855 . - . ID=Physo156310.3;Parent=Physo156310;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_16 . exon 592892 593129 . - . ID=Physo156310.2;Parent=Physo156310;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . exon 593163 593568 . - . ID=Physo156310.1;Parent=Physo156310;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . repeat_region 599019 599026 . ? . description=dust scaffold_16 . exon 598026 598349 . + . ID=Physo131577.4;Parent=Physo131577;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . exon 598472 598998 . + . ID=Physo131577.5;Parent=Physo131577;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 ensembl protein_coding_gene 599110 603550 . - . ID=Physo131578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160122;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 599110 603550 . - . ID=Physo131578;Parent=Physo131578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 599110 603550 . - . ID=Physo131578.1;Parent=Physo131578;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_16 . CDS 599189 603550 . - 0 ID=Physo131578;Parent=Physo131578;rank=1 scaffold_16 ensembl protein_coding_gene 605090 609126 . - . ID=Physo156312;biotype=protein_coding;external_name=C_scaffold_16000028;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 605090 609126 . - . ID=Physo156312;Parent=Physo156312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 605090 605185 . - 0 ID=Physo156312;Parent=Physo156312;rank=5 scaffold_16 . exon 605090 605185 . - . ID=Physo156312.5;Parent=Physo156312;constitutive=1;rank=5 scaffold_16 . CDS 605293 606439 . - 0 ID=Physo156312;Parent=Physo156312;rank=4 scaffold_16 . exon 605293 606439 . - . ID=Physo156312.4;Parent=Physo156312;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 606470 606700 . - 0 ID=Physo156312;Parent=Physo156312;rank=3 scaffold_16 . exon 606470 606700 . - . ID=Physo156312.3;Parent=Physo156312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_16 . CDS 606821 607138 . - 0 ID=Physo156312;Parent=Physo156312;rank=2 scaffold_16 . exon 606821 607138 . - . ID=Physo156312.2;Parent=Physo156312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 607160 609126 . - 0 ID=Physo156312;Parent=Physo156312;rank=1 scaffold_16 . exon 607160 609126 . - . ID=Physo156312.1;Parent=Physo156312;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . biological_region 608866 608869 0.999 + . logic_name=eponine scaffold_16 . biological_region 612454 612458 0.999 - . logic_name=eponine scaffold_16 . biological_region 612476 612476 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 614709 618680 . - . ID=Physo131581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160125;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 614709 618680 . - . ID=Physo131581;Parent=Physo131581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 614709 618680 . - 0 ID=Physo131581;Parent=Physo131581;rank=1 scaffold_16 . exon 614709 618680 . - . ID=Physo131581.1;Parent=Physo131581;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 611404 614605 . + . ID=Physo156313;biotype=protein_coding;external_name=C_scaffold_16000029;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 611404 614605 . + . ID=Physo156313;Parent=Physo156313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 611404 611580 . + 0 ID=Physo156313;Parent=Physo156313;rank=1 scaffold_16 . exon 611404 611580 . + . ID=Physo156313.1;Parent=Physo156313;constitutive=1;rank=1 scaffold_16 . CDS 611611 611762 . + 0 ID=Physo156313;Parent=Physo156313;rank=2 scaffold_16 . exon 611611 611762 . + . ID=Physo156313.2;Parent=Physo156313;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 611849 611933 . + 0 ID=Physo156313;Parent=Physo156313;rank=3 scaffold_16 . exon 611849 611933 . + . ID=Physo156313.3;Parent=Physo156313;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 612098 612494 . + 0 ID=Physo156313;Parent=Physo156313;rank=4 scaffold_16 . exon 612098 612494 . + . ID=Physo156313.4;Parent=Physo156313;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_16 . CDS 612552 612987 . + 0 ID=Physo156313;Parent=Physo156313;rank=5 scaffold_16 . exon 612552 612987 . + . ID=Physo156313.5;Parent=Physo156313;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_16 . CDS 613105 613514 . + 0 ID=Physo156313;Parent=Physo156313;rank=6 scaffold_16 . exon 613105 613514 . + . ID=Physo156313.6;Parent=Physo156313;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_16 . CDS 613565 613628 . + 0 ID=Physo156313;Parent=Physo156313;rank=7 scaffold_16 . exon 613565 613628 . + . ID=Physo156313.7;Parent=Physo156313;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_16 . CDS 613756 613912 . + 0 ID=Physo156313;Parent=Physo156313;rank=8 scaffold_16 . exon 613756 613912 . + . ID=Physo156313.8;Parent=Physo156313;constitutive=1;ensembl_phase=2;rank=8 scaffold_16 . CDS 613976 614374 . + 0 ID=Physo156313;Parent=Physo156313;rank=9 scaffold_16 . exon 613976 614374 . + . ID=Physo156313.9;Parent=Physo156313;constitutive=1;rank=9 scaffold_16 . CDS 614426 614605 . + 0 ID=Physo156313;Parent=Physo156313;rank=10 scaffold_16 . exon 614426 614605 . + . ID=Physo156313.10;Parent=Physo156313;constitutive=1;rank=10 scaffold_16 . repeat_region 623414 623460 . ? . description=trf scaffold_16 ensembl protein_coding_gene 618918 619499 . - . ID=Physo131582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160126;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 618918 619499 . - . ID=Physo131582;Parent=Physo131582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 618918 619499 . - 0 ID=Physo131582;Parent=Physo131582;rank=1 scaffold_16 . exon 618918 619499 . - . ID=Physo131582.1;Parent=Physo131582;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 620103 621788 . - . ID=Physo131583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160127;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 620103 621788 . - . ID=Physo131583;Parent=Physo131583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 620103 621788 . - 0 ID=Physo131583;Parent=Physo131583;rank=1 scaffold_16 . exon 620103 621788 . - . ID=Physo131583.1;Parent=Physo131583;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 622236 625946 . - . ID=Physo131584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160128;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 622236 625946 . - . ID=Physo131584;Parent=Physo131584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 622236 623942 . - 0 ID=Physo131584;Parent=Physo131584;rank=2 scaffold_16 . exon 622236 623942 . - . ID=Physo131584.2;Parent=Physo131584;constitutive=1;rank=2 scaffold_16 . CDS 624216 625946 . - 0 ID=Physo131584;Parent=Physo131584;rank=1 scaffold_16 . exon 624216 625946 . - . ID=Physo131584.1;Parent=Physo131584;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 626925 628100 . + . ID=Physo131585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160129;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 626925 628100 . + . ID=Physo131585;Parent=Physo131585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 626925 627206 . + 0 ID=Physo131585;Parent=Physo131585;rank=1 scaffold_16 . exon 626925 627206 . + . ID=Physo131585.1;Parent=Physo131585;constitutive=1;rank=1 scaffold_16 . CDS 627277 627371 . + 0 ID=Physo131585;Parent=Physo131585;rank=2 scaffold_16 . exon 627277 627371 . + . ID=Physo131585.2;Parent=Physo131585;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . CDS 627439 627707 . + 0 ID=Physo131585;Parent=Physo131585;rank=3 scaffold_16 . exon 627439 627707 . + . ID=Physo131585.3;Parent=Physo131585;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 627782 627916 . + 0 ID=Physo131585;Parent=Physo131585;rank=4 scaffold_16 . exon 627782 627916 . + . ID=Physo131585.4;Parent=Physo131585;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 628066 628100 . + 0 ID=Physo131585;Parent=Physo131585;rank=5 scaffold_16 . biological_region 632420 632420 0.999 - . logic_name=eponine scaffold_16 . biological_region 632821 632822 0.999 + . logic_name=eponine scaffold_16 . repeat_region 633796 633848 . ? . description=dust scaffold_16 . biological_region 634499 634502 0.999 + . logic_name=eponine scaffold_16 . biological_region 635080 635085 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 633114 640397 . + . ID=Physo108569;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160008;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 633114 640397 . + . ID=Physo108569;Parent=Physo108569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 633114 633786 . + . ID=Physo108569.1;Parent=Physo108569;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_16 . CDS 633128 633786 . + 0 ID=Physo108569;Parent=Physo108569;rank=1 scaffold_16 . CDS 640346 640397 . + 0 ID=Physo108569;Parent=Physo108569;rank=2 scaffold_16 . exon 628066 628100 . + . ID=Physo131585.5;Parent=Physo131585;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 ensembl protein_coding_gene 631512 632722 . - . ID=Physo131586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160130;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 631512 632722 . - . ID=Physo131586;Parent=Physo131586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 631512 631563 . - 0 ID=Physo131586;Parent=Physo131586;rank=4 scaffold_16 . exon 631512 631563 . - . ID=Physo131586.4;Parent=Physo131586;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 631627 631748 . - 0 ID=Physo131586;Parent=Physo131586;rank=3 scaffold_16 . exon 631627 631748 . - . ID=Physo131586.3;Parent=Physo131586;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 631817 631897 . - 0 ID=Physo131586;Parent=Physo131586;rank=2 scaffold_16 . exon 631817 631897 . - . ID=Physo131586.2;Parent=Physo131586;constitutive=1;rank=2 scaffold_16 . CDS 631961 632722 . - 0 ID=Physo131586;Parent=Physo131586;rank=1 scaffold_16 . exon 631961 632722 . - . ID=Physo131586.1;Parent=Physo131586;constitutive=1;rank=1 scaffold_16 . repeat_region 638930 639004 . ? . description=trf scaffold_16 . repeat_region 640740 640774 . ? . description=trf scaffold_16 . repeat_region 643255 643385 . ? . description=trf scaffold_16 . repeat_region 643255 643406 . ? . description=trf scaffold_16 . repeat_region 643269 643406 . ? . description=trf scaffold_16 . exon 640346 640397 . + . ID=Physo108569.2;Parent=Physo108569;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 ensembl protein_coding_gene 643109 643972 . + . ID=Physo131588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160132;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 643109 643972 . + . ID=Physo131588;Parent=Physo131588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 643109 643444 . + 0 ID=Physo131588;Parent=Physo131588;rank=1 scaffold_16 . exon 643109 643444 . + . ID=Physo131588.1;Parent=Physo131588;constitutive=1;rank=1 scaffold_16 . CDS 643706 643972 . + 0 ID=Physo131588;Parent=Physo131588;rank=2 scaffold_16 . exon 643706 643972 . + . ID=Physo131588.2;Parent=Physo131588;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 647634 653058 . + . ID=Physo131589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160133;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 647634 653058 . + . ID=Physo131589;Parent=Physo131589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 647634 648320 . + 0 ID=Physo131589;Parent=Physo131589;rank=1 scaffold_16 . exon 647634 648320 . + . ID=Physo131589.1;Parent=Physo131589;constitutive=1;rank=1 scaffold_16 . CDS 648443 649422 . + 0 ID=Physo131589;Parent=Physo131589;rank=2 scaffold_16 . CDS 649575 650301 . + 0 ID=Physo131589;Parent=Physo131589;rank=3 scaffold_16 . CDS 650346 651165 . + 0 ID=Physo131589;Parent=Physo131589;rank=4 scaffold_16 . CDS 651190 651339 . + 0 ID=Physo131589;Parent=Physo131589;rank=5 scaffold_16 . CDS 651513 651910 . + 0 ID=Physo131589;Parent=Physo131589;rank=6 scaffold_16 . CDS 652274 652770 . + 0 ID=Physo131589;Parent=Physo131589;rank=7 scaffold_16 . CDS 652953 653058 . + 0 ID=Physo131589;Parent=Physo131589;rank=8 scaffold_16 . biological_region 648519 648526 0.999 + . logic_name=eponine scaffold_16 . biological_region 648576 648582 0.999 + . logic_name=eponine scaffold_16 . biological_region 648614 648617 0.999 - . logic_name=eponine scaffold_16 . biological_region 648722 648723 0.999 + . logic_name=eponine scaffold_16 . biological_region 649338 649341 0.999 + . logic_name=eponine scaffold_16 . biological_region 649980 649986 0.999 + . logic_name=eponine scaffold_16 . biological_region 650298 650300 0.999 + . logic_name=eponine scaffold_16 . repeat_region 652786 652835 . ? . description=dust scaffold_16 . biological_region 655418 655422 0.999 + . logic_name=eponine scaffold_16 . exon 648443 649422 . + . ID=Physo131589.2;Parent=Physo131589;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_16 . exon 649575 650301 . + . ID=Physo131589.3;Parent=Physo131589;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . exon 650346 651165 . + . ID=Physo131589.4;Parent=Physo131589;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_16 . exon 651190 651339 . + . ID=Physo131589.5;Parent=Physo131589;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_16 . exon 651513 651910 . + . ID=Physo131589.6;Parent=Physo131589;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 . exon 652274 652770 . + . ID=Physo131589.7;Parent=Physo131589;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_16 . exon 652953 653058 . + . ID=Physo131589.8;Parent=Physo131589;constitutive=1;ensembl_phase=2;rank=8 scaffold_16 ensembl protein_coding_gene 655178 656371 . - . ID=Physo131590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160134;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 655178 656371 . - . ID=Physo131590;Parent=Physo131590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 655178 655188 . - 0 ID=Physo131590;Parent=Physo131590;rank=5 scaffold_16 . exon 655178 655188 . - . ID=Physo131590.5;Parent=Physo131590;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 655426 655540 . - 0 ID=Physo131590;Parent=Physo131590;rank=4 scaffold_16 . exon 655426 655540 . - . ID=Physo131590.4;Parent=Physo131590;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_16 . CDS 655651 655666 . - 0 ID=Physo131590;Parent=Physo131590;rank=3 scaffold_16 . exon 655651 655666 . - . ID=Physo131590.3;Parent=Physo131590;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 655845 655967 . - 0 ID=Physo131590;Parent=Physo131590;rank=2 scaffold_16 . exon 655845 655967 . - . ID=Physo131590.2;Parent=Physo131590;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 656046 656371 . - 0 ID=Physo131590;Parent=Physo131590;rank=1 scaffold_16 . exon 656046 656371 . - . ID=Physo131590.1;Parent=Physo131590;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . repeat_region 666569 666599 . ? . description=trf scaffold_16 ensembl protein_coding_gene 661831 664716 . - . ID=Physo131593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160137;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 661831 664716 . - . ID=Physo131593;Parent=Physo131593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 661831 664716 . - 0 ID=Physo131593;Parent=Physo131593;rank=1 scaffold_16 . exon 661831 664716 . - . ID=Physo131593.1;Parent=Physo131593;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 664919 666986 . - . ID=Physo131594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160138;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 664919 666986 . - . ID=Physo131594;Parent=Physo131594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 664919 665345 . - 0 ID=Physo131594;Parent=Physo131594;rank=5 scaffold_16 . exon 664919 665345 . - . ID=Physo131594.5;Parent=Physo131594;constitutive=1;ensembl_phase=2;rank=5 scaffold_16 . CDS 665419 665519 . - 0 ID=Physo131594;Parent=Physo131594;rank=4 scaffold_16 . exon 665419 665519 . - . ID=Physo131594.4;Parent=Physo131594;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 665588 666342 . - 0 ID=Physo131594;Parent=Physo131594;rank=3 scaffold_16 . exon 665588 666342 . - . ID=Physo131594.3;Parent=Physo131594;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 666406 666533 . - 0 ID=Physo131594;Parent=Physo131594;rank=2 scaffold_16 . exon 666406 666533 . - . ID=Physo131594.2;Parent=Physo131594;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 666613 666986 . - 0 ID=Physo131594;Parent=Physo131594;rank=1 scaffold_16 . exon 666613 666986 . - . ID=Physo131594.1;Parent=Physo131594;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 658691 660506 . - . ID=Physo156316;biotype=protein_coding;external_name=C_scaffold_16000032;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 658691 660506 . - . ID=Physo156316;Parent=Physo156316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 658691 659316 . - 0 ID=Physo156316;Parent=Physo156316;rank=5 scaffold_16 . exon 658691 659316 . - . ID=Physo156316.5;Parent=Physo156316;constitutive=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 659359 659790 . - 0 ID=Physo156316;Parent=Physo156316;rank=4 scaffold_16 . exon 659359 659790 . - . ID=Physo156316.4;Parent=Physo156316;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 659872 660089 . - 0 ID=Physo156316;Parent=Physo156316;rank=3 scaffold_16 . exon 659872 660089 . - . ID=Physo156316.3;Parent=Physo156316;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 660184 660303 . - 0 ID=Physo156316;Parent=Physo156316;rank=2 scaffold_16 . exon 660184 660303 . - . ID=Physo156316.2;Parent=Physo156316;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 660331 660506 . - 0 ID=Physo156316;Parent=Physo156316;rank=1 scaffold_16 . exon 660331 660506 . - . ID=Physo156316.1;Parent=Physo156316;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 660721 661527 . + . ID=Physo156317;biotype=protein_coding;external_name=C_scaffold_16000033;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 660721 661527 . + . ID=Physo156317;Parent=Physo156317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 660721 661527 . + 0 ID=Physo156317;Parent=Physo156317;rank=1 scaffold_16 . exon 660721 661527 . + . ID=Physo156317.1;Parent=Physo156317;constitutive=1;rank=1 scaffold_16 . biological_region 673902 673905 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 672405 673096 . + . ID=Physo108571;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160010;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 672405 673096 . + . ID=Physo108571;Parent=Physo108571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 672405 672756 . + 0 ID=Physo108571;Parent=Physo108571;rank=1 scaffold_16 . exon 672405 672756 . + . ID=Physo108571.1;Parent=Physo108571;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 672795 673096 . + 0 ID=Physo108571;Parent=Physo108571;rank=2 scaffold_16 . exon 672795 673096 . + . ID=Physo108571.2;Parent=Physo108571;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 668978 670230 . + . ID=Physo131596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160140;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 668978 670230 . + . ID=Physo131596;Parent=Physo131596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 668978 669730 . + . ID=Physo131596.1;Parent=Physo131596;constitutive=1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 669065 669730 . + 0 ID=Physo131596;Parent=Physo131596;rank=1 scaffold_16 . CDS 669796 669903 . + 0 ID=Physo131596;Parent=Physo131596;rank=2 scaffold_16 . exon 669796 669903 . + . ID=Physo131596.2;Parent=Physo131596;constitutive=1;rank=2 scaffold_16 . CDS 669973 670230 . + 0 ID=Physo131596;Parent=Physo131596;rank=3 scaffold_16 . exon 669973 670230 . + . ID=Physo131596.3;Parent=Physo131596;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 673113 681138 . - . ID=Physo131598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160142;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 673113 681138 . - . ID=Physo131598;Parent=Physo131598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 673113 674075 . - . ID=Physo131598.6;Parent=Physo131598;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_16 . CDS 673173 674075 . - 0 ID=Physo131598;Parent=Physo131598;rank=6 scaffold_16 . CDS 674160 674477 . - 0 ID=Physo131598;Parent=Physo131598;rank=5 scaffold_16 . exon 674160 674477 . - . ID=Physo131598.5;Parent=Physo131598;constitutive=1;rank=5 scaffold_16 . CDS 675213 676003 . - 0 ID=Physo131598;Parent=Physo131598;rank=4 scaffold_16 . exon 675213 676003 . - . ID=Physo131598.4;Parent=Physo131598;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 676118 677392 . - 0 ID=Physo131598;Parent=Physo131598;rank=3 scaffold_16 . exon 676118 677392 . - . ID=Physo131598.3;Parent=Physo131598;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 677620 679438 . - 0 ID=Physo131598;Parent=Physo131598;rank=2 scaffold_16 . exon 677620 679438 . - . ID=Physo131598.2;Parent=Physo131598;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 679969 681138 . - 0 ID=Physo131598;Parent=Physo131598;rank=1 scaffold_16 ensembl protein_coding_gene 667996 668526 . - . ID=Physo156320;biotype=protein_coding;external_name=C_scaffold_16000036;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 667996 668526 . - . ID=Physo156320;Parent=Physo156320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 667996 668526 . - 0 ID=Physo156320;Parent=Physo156320;rank=1 scaffold_16 . exon 667996 668526 . - . ID=Physo156320.1;Parent=Physo156320;constitutive=1;rank=1 scaffold_16 . repeat_region 680473 680590 . ? . description=dust scaffold_16 . repeat_region 680481 680580 . ? . description=trf scaffold_16 . repeat_region 680481 680601 . ? . description=trf scaffold_16 . repeat_region 680483 680586 . ? . description=trf scaffold_16 . repeat_region 680555 680616 . ? . description=trf scaffold_16 . repeat_region 680724 680757 . ? . description=trf scaffold_16 . repeat_region 680724 680788 . ? . description=dust scaffold_16 . repeat_region 680726 680781 . ? . description=trf scaffold_16 . repeat_region 680726 680788 . ? . description=trf scaffold_16 . repeat_region 680729 680800 . ? . description=trf scaffold_16 . repeat_region 680741 680788 . ? . description=trf scaffold_16 . repeat_region 680953 681070 . ? . description=dust scaffold_16 . repeat_region 680981 681029 . ? . description=trf scaffold_16 . repeat_region 686362 686370 . ? . description=dust scaffold_16 . exon 679969 681138 . - . ID=Physo131598.1;Parent=Physo131598;constitutive=1;rank=1 scaffold_16 . repeat_region 690148 690495 . + . description=GypsyPi-1c_I-int scaffold_16 . biological_region 690202 690203 0.999 + . logic_name=eponine scaffold_16 . biological_region 696153 696157 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 695194 696178 . - . ID=Physo113776;biotype=protein_coding;external_name=estExt_Genewise1.C_160098;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 695194 696178 . - . ID=Physo113776;Parent=Physo113776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 695194 695932 . - . ID=Physo113776.2;Parent=Physo113776;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_16 . CDS 695196 695849 . - 0 ID=Physo113776;Parent=Physo113776;rank=1 scaffold_16 . exon 696112 696178 . - . ID=Physo113776.1;Parent=Physo113776;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 ensembl protein_coding_gene 696206 699167 . - . ID=Physo131599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160143;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 696206 699167 . - . ID=Physo131599;Parent=Physo131599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 696206 696315 . - . ID=Physo131599.6;Parent=Physo131599;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_16 . CDS 696290 696315 . - 0 ID=Physo131599;Parent=Physo131599;rank=6 scaffold_16 . CDS 696338 696439 . - 0 ID=Physo131599;Parent=Physo131599;rank=5 scaffold_16 . exon 696338 696439 . - . ID=Physo131599.5;Parent=Physo131599;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_16 . CDS 696554 696958 . - 0 ID=Physo131599;Parent=Physo131599;rank=4 scaffold_16 . exon 696554 696958 . - . ID=Physo131599.4;Parent=Physo131599;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_16 . CDS 697251 697379 . - 0 ID=Physo131599;Parent=Physo131599;rank=3 scaffold_16 . exon 697251 697379 . - . ID=Physo131599.3;Parent=Physo131599;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 697719 697974 . - 0 ID=Physo131599;Parent=Physo131599;rank=2 scaffold_16 . CDS 698682 699167 . - 0 ID=Physo131599;Parent=Physo131599;rank=1 scaffold_16 . repeat_region 699255 699293 . ? . description=trf scaffold_16 . repeat_region 699304 699313 . ? . description=dust scaffold_16 . repeat_region 702041 702236 . - . description=Polinton-1_PI scaffold_16 . repeat_region 702241 702331 . - . description=Polinton-1_PI scaffold_16 . repeat_region 702380 702648 . + . description=Polinton-1_PI scaffold_16 . repeat_region 702799 702832 . + . description=Polinton-1_PI scaffold_16 . repeat_region 703254 703424 . ? . description=dust scaffold_16 . repeat_region 703524 707898 . + . description=Polinton-1_PI scaffold_16 . exon 697719 697974 . - . ID=Physo131599.2;Parent=Physo131599;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . exon 698682 699167 . - . ID=Physo131599.1;Parent=Physo131599;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 699884 700636 . + . ID=Physo131600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160144;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 699884 700636 . + . ID=Physo131600;Parent=Physo131600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 699884 700146 . + 0 ID=Physo131600;Parent=Physo131600;rank=1 scaffold_16 . exon 699884 700146 . + . ID=Physo131600.1;Parent=Physo131600;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 700229 700238 . + 0 ID=Physo131600;Parent=Physo131600;rank=2 scaffold_16 . exon 700229 700238 . + . ID=Physo131600.2;Parent=Physo131600;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 700403 700636 . + 0 ID=Physo131600;Parent=Physo131600;rank=3 scaffold_16 . exon 700403 700636 . + . ID=Physo131600.3;Parent=Physo131600;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 702483 705945 . + . ID=Physo131601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160145;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 702483 705945 . + . ID=Physo131601;Parent=Physo131601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 702483 703030 . + . ID=Physo131601.1;Parent=Physo131601;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 702493 703030 . + 0 ID=Physo131601;Parent=Physo131601;rank=1 scaffold_16 . CDS 704043 704918 . + 0 ID=Physo131601;Parent=Physo131601;rank=2 scaffold_16 . exon 704043 704918 . + . ID=Physo131601.2;Parent=Physo131601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 705197 705945 . + 0 ID=Physo131601;Parent=Physo131601;rank=3 scaffold_16 . exon 705197 705945 . + . ID=Physo131601.3;Parent=Physo131601;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . repeat_region 714343 719680 . + . description=Polinton-1_PI scaffold_16 . repeat_region 719040 719047 . ? . description=dust scaffold_16 . biological_region 726866 726871 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 723552 724817 . + . ID=Physo131602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160146;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 723552 724817 . + . ID=Physo131602;Parent=Physo131602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 723552 724817 . + 0 ID=Physo131602;Parent=Physo131602;rank=1 scaffold_16 . exon 723552 724817 . + . ID=Physo131602.1;Parent=Physo131602;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 725486 726648 . + . ID=Physo131603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160147;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 725486 726648 . + . ID=Physo131603;Parent=Physo131603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 725486 725862 . + 0 ID=Physo131603;Parent=Physo131603;rank=1 scaffold_16 . exon 725486 725862 . + . ID=Physo131603.1;Parent=Physo131603;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 725926 726538 . + 0 ID=Physo131603;Parent=Physo131603;rank=2 scaffold_16 . exon 725926 726648 . + . ID=Physo131603.2;Parent=Physo131603;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_16 . repeat_region 729858 729971 . ? . description=trf scaffold_16 . repeat_region 729863 729984 . ? . description=trf scaffold_16 . repeat_region 729907 730006 . ? . description=trf scaffold_16 . repeat_region 730931 730980 . ? . description=trf scaffold_16 . repeat_region 732356 732486 . ? . description=trf scaffold_16 . repeat_region 732616 732834 . ? . description=trf scaffold_16 . repeat_region 733340 733392 . ? . description=trf scaffold_16 . repeat_region 733832 733884 . ? . description=trf scaffold_16 . repeat_region 734393 734445 . ? . description=trf scaffold_16 ensembl protein_coding_gene 728147 735085 . + . ID=Physo131604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160148;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 728147 735085 . + . ID=Physo131604;Parent=Physo131604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 728147 735085 . + 0 ID=Physo131604;Parent=Physo131604;rank=1 scaffold_16 . exon 728147 735085 . + . ID=Physo131604.1;Parent=Physo131604;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 736036 737897 . + . ID=Physo156324;biotype=protein_coding;external_name=C_scaffold_16000040;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 736036 737897 . + . ID=Physo156324;Parent=Physo156324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 736036 736824 . + 0 ID=Physo156324;Parent=Physo156324;rank=1 scaffold_16 . exon 736036 736824 . + . ID=Physo156324.1;Parent=Physo156324;constitutive=1;rank=1 scaffold_16 . CDS 736978 737260 . + 0 ID=Physo156324;Parent=Physo156324;rank=2 scaffold_16 . exon 736978 737260 . + . ID=Physo156324.2;Parent=Physo156324;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 737341 737520 . + 0 ID=Physo156324;Parent=Physo156324;rank=3 scaffold_16 . exon 737341 737520 . + . ID=Physo156324.3;Parent=Physo156324;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 737734 737897 . + 0 ID=Physo156324;Parent=Physo156324;rank=4 scaffold_16 . biological_region 737759 737761 0.999 + . logic_name=eponine scaffold_16 . repeat_region 738652 738661 . ? . description=dust scaffold_16 . biological_region 739499 739501 0.999 - . logic_name=eponine scaffold_16 . biological_region 739739 739743 0.999 - . logic_name=eponine scaffold_16 . biological_region 741569 741570 0.999 + . logic_name=eponine scaffold_16 . biological_region 743578 743584 0.999 + . logic_name=eponine scaffold_16 . biological_region 743653 743653 0.999 - . logic_name=eponine scaffold_16 . biological_region 746715 746718 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 740866 742133 . + . ID=Physo131606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160150;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 740866 742133 . + . ID=Physo131606;Parent=Physo131606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 740866 740916 . + 0 ID=Physo131606;Parent=Physo131606;rank=1 scaffold_16 . exon 740866 740916 . + . ID=Physo131606.1;Parent=Physo131606;constitutive=1;rank=1 scaffold_16 . CDS 741003 742133 . + 0 ID=Physo131606;Parent=Physo131606;rank=2 scaffold_16 . exon 741003 742133 . + . ID=Physo131606.2;Parent=Physo131606;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 743095 744507 . + . ID=Physo131607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160151;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 743095 744507 . + . ID=Physo131607;Parent=Physo131607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 743095 743172 . + 0 ID=Physo131607;Parent=Physo131607;rank=1 scaffold_16 . exon 743095 743172 . + . ID=Physo131607.1;Parent=Physo131607;constitutive=1;rank=1 scaffold_16 . CDS 743254 744507 . + 0 ID=Physo131607;Parent=Physo131607;rank=2 scaffold_16 . exon 743254 744507 . + . ID=Physo131607.2;Parent=Physo131607;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 746384 751731 . + . ID=Physo131608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160152;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 746384 751731 . + . ID=Physo131608;Parent=Physo131608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 746384 748098 . + 0 ID=Physo131608;Parent=Physo131608;rank=1 scaffold_16 . exon 746384 748098 . + . ID=Physo131608.1;Parent=Physo131608;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 750523 750693 . + 0 ID=Physo131608;Parent=Physo131608;rank=2 scaffold_16 . CDS 750756 750781 . + 0 ID=Physo131608;Parent=Physo131608;rank=3 scaffold_16 . CDS 750915 751137 . + 0 ID=Physo131608;Parent=Physo131608;rank=4 scaffold_16 . CDS 751167 751242 . + 0 ID=Physo131608;Parent=Physo131608;rank=5 scaffold_16 . exon 737734 737897 . + . ID=Physo156324.4;Parent=Physo156324;constitutive=1;ensembl_phase=1;rank=4 scaffold_16 . repeat_region 748433 748521 . ? . description=trf scaffold_16 . repeat_region 748460 748495 . ? . description=trf scaffold_16 . repeat_region 748461 748496 . ? . description=trf scaffold_16 . repeat_region 749282 749341 . ? . description=trf scaffold_16 . exon 750523 750693 . + . ID=Physo131608.2;Parent=Physo131608;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . exon 750756 750781 . + . ID=Physo131608.3;Parent=Physo131608;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_16 . exon 750915 751137 . + . ID=Physo131608.4;Parent=Physo131608;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_16 . exon 751167 751731 . + . ID=Physo131608.5;Parent=Physo131608;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_16 ensembl protein_coding_gene 753288 754838 . - . ID=Physo131611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160155;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 753288 754838 . - . ID=Physo131611;Parent=Physo131611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 753288 753679 . - 0 ID=Physo131611;Parent=Physo131611;rank=2 scaffold_16 . exon 753288 753679 . - . ID=Physo131611.2;Parent=Physo131611;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 753752 754838 . - 0 ID=Physo131611;Parent=Physo131611;rank=1 scaffold_16 . exon 753752 754838 . - . ID=Physo131611.1;Parent=Physo131611;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 756408 758137 . - . ID=Physo131612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160156;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 756408 758137 . - . ID=Physo131612;Parent=Physo131612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 756408 756580 . - 0 ID=Physo131612;Parent=Physo131612;rank=3 scaffold_16 . exon 756408 756580 . - . ID=Physo131612.3;Parent=Physo131612;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 756665 756857 . - 0 ID=Physo131612;Parent=Physo131612;rank=2 scaffold_16 . exon 756665 756857 . - . ID=Physo131612.2;Parent=Physo131612;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_16 . CDS 756987 757811 . - 0 ID=Physo131612;Parent=Physo131612;rank=1 scaffold_16 . exon 756987 758137 . - . ID=Physo131612.1;Parent=Physo131612;constitutive=1;ensembl_phase=-1;rank=1 scaffold_16 . biological_region 757556 757562 0.999 + . logic_name=eponine scaffold_16 . biological_region 757583 757586 0.999 + . logic_name=eponine scaffold_16 . biological_region 757657 757658 0.999 - . logic_name=eponine scaffold_16 . biological_region 757689 757696 0.999 - . logic_name=eponine scaffold_16 . repeat_region 758562 758607 . ? . description=dust scaffold_16 . repeat_region 759217 759265 . ? . description=dust scaffold_16 . biological_region 759606 759606 0.999 + . logic_name=eponine scaffold_16 . repeat_region 760379 760426 . ? . description=dust scaffold_16 . repeat_region 760439 760482 . ? . description=dust scaffold_16 . biological_region 764422 764425 0.999 - . logic_name=eponine scaffold_16 . biological_region 764478 764481 0.999 - . logic_name=eponine scaffold_16 . biological_region 765434 765439 0.999 - . logic_name=eponine scaffold_16 . biological_region 765872 765877 0.999 + . logic_name=eponine scaffold_16 . biological_region 765886 765893 0.999 + . logic_name=eponine scaffold_16 . biological_region 765908 765914 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 765347 768039 . + . ID=Physo108572;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160011;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 765347 768039 . + . ID=Physo108572;Parent=Physo108572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 765347 765522 . + 0 ID=Physo108572;Parent=Physo108572;rank=1 scaffold_16 . exon 765347 765522 . + . ID=Physo108572.1;Parent=Physo108572;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 765585 765754 . + 0 ID=Physo108572;Parent=Physo108572;rank=2 scaffold_16 . exon 765585 765754 . + . ID=Physo108572.2;Parent=Physo108572;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 765821 766443 . + 0 ID=Physo108572;Parent=Physo108572;rank=3 scaffold_16 . exon 765821 766443 . + . ID=Physo108572.3;Parent=Physo108572;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 766513 766694 . + 0 ID=Physo108572;Parent=Physo108572;rank=4 scaffold_16 . exon 766513 766694 . + . ID=Physo108572.4;Parent=Physo108572;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_16 . CDS 766781 766867 . + 0 ID=Physo108572;Parent=Physo108572;rank=5 scaffold_16 . exon 766781 766867 . + . ID=Physo108572.5;Parent=Physo108572;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_16 . CDS 766934 767169 . + 0 ID=Physo108572;Parent=Physo108572;rank=6 scaffold_16 . exon 766934 767169 . + . ID=Physo108572.6;Parent=Physo108572;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_16 . CDS 767252 767370 . + 0 ID=Physo108572;Parent=Physo108572;rank=7 scaffold_16 . exon 767252 767370 . + . ID=Physo108572.7;Parent=Physo108572;constitutive=1;ensembl_phase=1;rank=7 scaffold_16 . CDS 767440 767547 . + 0 ID=Physo108572;Parent=Physo108572;rank=8 scaffold_16 . exon 767440 767547 . + . ID=Physo108572.8;Parent=Physo108572;constitutive=1;rank=8 scaffold_16 . CDS 767619 767702 . + 0 ID=Physo108572;Parent=Physo108572;rank=9 scaffold_16 . CDS 767785 768039 . + 0 ID=Physo108572;Parent=Physo108572;rank=10 scaffold_16 ensembl protein_coding_gene 759535 760622 . - . ID=Physo113783;biotype=protein_coding;external_name=estExt_Genewise1.C_160105;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 759535 760622 . - . ID=Physo113783;Parent=Physo113783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 759535 760124 . - 0 ID=Physo113783;Parent=Physo113783;rank=3 scaffold_16 . exon 759535 760124 . - . ID=Physo113783.3;Parent=Physo113783;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 760249 760377 . - 0 ID=Physo113783;Parent=Physo113783;rank=2 scaffold_16 . exon 760249 760377 . - . ID=Physo113783.2;Parent=Physo113783;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 760514 760601 . - 0 ID=Physo113783;Parent=Physo113783;rank=1 scaffold_16 . exon 760514 760622 . - . ID=Physo113783.1;Parent=Physo113783;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_16 ensembl protein_coding_gene 760990 764582 . + . ID=Physo131614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160158;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 760990 764582 . + . ID=Physo131614;Parent=Physo131614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 760990 761740 . + 0 ID=Physo131614;Parent=Physo131614;rank=1 scaffold_16 . exon 760990 761740 . + . ID=Physo131614.1;Parent=Physo131614;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 761822 762740 . + 0 ID=Physo131614;Parent=Physo131614;rank=2 scaffold_16 . exon 761822 762740 . + . ID=Physo131614.2;Parent=Physo131614;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 762817 762967 . + 0 ID=Physo131614;Parent=Physo131614;rank=3 scaffold_16 . exon 762817 762967 . + . ID=Physo131614.3;Parent=Physo131614;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . CDS 763055 763837 . + 0 ID=Physo131614;Parent=Physo131614;rank=4 scaffold_16 . exon 763055 763837 . + . ID=Physo131614.4;Parent=Physo131614;constitutive=1;rank=4 scaffold_16 . CDS 764117 764480 . + 0 ID=Physo131614;Parent=Physo131614;rank=5 scaffold_16 . exon 764117 764480 . + . ID=Physo131614.5;Parent=Physo131614;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_16 . CDS 764557 764582 . + 0 ID=Physo131614;Parent=Physo131614;rank=6 scaffold_16 . exon 764557 764582 . + . ID=Physo131614.6;Parent=Physo131614;constitutive=1;ensembl_phase=1;rank=6 scaffold_16 . repeat_region 774663 774825 . ? . description=trf scaffold_16 . exon 767619 767702 . + . ID=Physo108572.9;Parent=Physo108572;constitutive=1;rank=9 scaffold_16 . exon 767785 768039 . + . ID=Physo108572.10;Parent=Physo108572;constitutive=1;rank=10 scaffold_16 ensembl protein_coding_gene 768324 769559 . + . ID=Physo131616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160160;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 768324 769559 . + . ID=Physo131616;Parent=Physo131616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 768324 769095 . + 0 ID=Physo131616;Parent=Physo131616;rank=1 scaffold_16 . exon 768324 769095 . + . ID=Physo131616.1;Parent=Physo131616;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 . CDS 769312 769354 . + 0 ID=Physo131616;Parent=Physo131616;rank=2 scaffold_16 . exon 769312 769354 . + . ID=Physo131616.2;Parent=Physo131616;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 769439 769559 . + 0 ID=Physo131616;Parent=Physo131616;rank=3 scaffold_16 . exon 769439 769559 . + . ID=Physo131616.3;Parent=Physo131616;constitutive=1;ensembl_phase=2;rank=3 scaffold_16 . repeat_region 780534 780549 . ? . description=dust scaffold_16 . repeat_region 781074 781083 . ? . description=dust scaffold_16 . repeat_region 781861 781868 . ? . description=dust scaffold_16 . repeat_region 786039 786047 . ? . description=dust scaffold_16 ensembl protein_coding_gene 786523 786849 . + . ID=Physo131617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160161;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 786523 786849 . + . ID=Physo131617;Parent=Physo131617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 786523 786849 . + 0 ID=Physo131617;Parent=Physo131617;rank=1 scaffold_16 . exon 786523 786849 . + . ID=Physo131617.1;Parent=Physo131617;constitutive=1;rank=1 scaffold_16 . repeat_region 787678 787742 . ? . description=trf scaffold_16 . repeat_region 788163 788219 . ? . description=trf scaffold_16 . biological_region 788446 788446 0.999 + . logic_name=eponine scaffold_16 . biological_region 790358 790361 0.999 + . logic_name=eponine scaffold_16 . biological_region 790672 790672 0.999 + . logic_name=eponine scaffold_16 . biological_region 790709 790719 0.999 - . logic_name=eponine scaffold_16 . biological_region 790734 790740 0.999 + . logic_name=eponine scaffold_16 . biological_region 790761 790766 0.999 - . logic_name=eponine scaffold_16 . biological_region 790793 790800 0.999 + . logic_name=eponine scaffold_16 . biological_region 790798 790804 0.999 - . logic_name=eponine scaffold_16 . biological_region 790811 790816 0.999 - . logic_name=eponine scaffold_16 . biological_region 790816 790820 0.999 + . logic_name=eponine scaffold_16 . biological_region 790828 790831 0.999 - . logic_name=eponine scaffold_16 . biological_region 790849 790851 0.999 - . logic_name=eponine scaffold_16 . biological_region 796682 796686 0.999 - . logic_name=eponine scaffold_16 . biological_region 796739 796741 0.999 - . logic_name=eponine scaffold_16 . biological_region 796798 796803 0.999 - . logic_name=eponine scaffold_16 . biological_region 796856 796859 0.999 + . logic_name=eponine scaffold_16 . biological_region 796957 796960 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 787508 788963 . + . ID=Physo131618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160162;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 787508 788963 . + . ID=Physo131618;Parent=Physo131618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 787508 788963 . + . ID=Physo131618.1;Parent=Physo131618;constitutive=1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 787536 788963 . + 0 ID=Physo131618;Parent=Physo131618;rank=1 scaffold_16 ensembl protein_coding_gene 788970 792576 . - . ID=Physo131619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160163;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 788970 792576 . - . ID=Physo131619;Parent=Physo131619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 788970 790139 . - . ID=Physo131619.6;Parent=Physo131619;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_16 . CDS 789080 790139 . - 0 ID=Physo131619;Parent=Physo131619;rank=6 scaffold_16 . CDS 790229 790440 . - 0 ID=Physo131619;Parent=Physo131619;rank=5 scaffold_16 . exon 790229 790440 . - . ID=Physo131619.5;Parent=Physo131619;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_16 . CDS 790508 790928 . - 0 ID=Physo131619;Parent=Physo131619;rank=4 scaffold_16 . exon 790508 790928 . - . ID=Physo131619.4;Parent=Physo131619;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 791042 792152 . - 0 ID=Physo131619;Parent=Physo131619;rank=3 scaffold_16 . exon 791042 792152 . - . ID=Physo131619.3;Parent=Physo131619;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_16 . CDS 792255 792362 . - 0 ID=Physo131619;Parent=Physo131619;rank=2 scaffold_16 . exon 792255 792362 . - . ID=Physo131619.2;Parent=Physo131619;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 792396 792576 . - 0 ID=Physo131619;Parent=Physo131619;rank=1 scaffold_16 . exon 792396 792576 . - . ID=Physo131619.1;Parent=Physo131619;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 796578 797563 . + . ID=Physo131620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160164;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 796578 797563 . + . ID=Physo131620;Parent=Physo131620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 796578 797036 . + 0 ID=Physo131620;Parent=Physo131620;rank=1 scaffold_16 . exon 796578 797036 . + . ID=Physo131620.1;Parent=Physo131620;constitutive=1;rank=1 scaffold_16 . CDS 797135 797563 . + 0 ID=Physo131620;Parent=Physo131620;rank=2 scaffold_16 . exon 797135 797563 . + . ID=Physo131620.2;Parent=Physo131620;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 803039 803305 . - . ID=Physo113802;biotype=protein_coding;external_name=estExt_Genewise1.C_160124;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 803039 803305 . - . ID=Physo113802;Parent=Physo113802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 803039 803284 . - 0 ID=Physo113802;Parent=Physo113802;rank=1 scaffold_16 . exon 803039 803305 . - . ID=Physo113802.1;Parent=Physo113802;constitutive=1;ensembl_phase=-1;rank=1 scaffold_16 ensembl protein_coding_gene 797853 800117 . - . ID=Physo131621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160165;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 797853 800117 . - . ID=Physo131621;Parent=Physo131621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 797853 797877 . - 0 ID=Physo131621;Parent=Physo131621;rank=4 scaffold_16 . exon 797853 797877 . - . ID=Physo131621.4;Parent=Physo131621;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 797952 798010 . - 0 ID=Physo131621;Parent=Physo131621;rank=3 scaffold_16 . exon 797952 798010 . - . ID=Physo131621.3;Parent=Physo131621;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_16 . CDS 798095 798166 . - 0 ID=Physo131621;Parent=Physo131621;rank=2 scaffold_16 . exon 798095 798166 . - . ID=Physo131621.2;Parent=Physo131621;constitutive=1;rank=2 scaffold_16 . CDS 798246 800117 . - 0 ID=Physo131621;Parent=Physo131621;rank=1 scaffold_16 . exon 798246 800117 . - . ID=Physo131621.1;Parent=Physo131621;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 805382 806452 . - . ID=Physo131622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160166;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 805382 806452 . - . ID=Physo131622;Parent=Physo131622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 805382 805399 . - 0 ID=Physo131622;Parent=Physo131622;rank=3 scaffold_16 . exon 805382 805399 . - . ID=Physo131622.3;Parent=Physo131622;constitutive=1;rank=3 scaffold_16 . CDS 805473 806264 . - 0 ID=Physo131622;Parent=Physo131622;rank=2 scaffold_16 . exon 805473 806264 . - . ID=Physo131622.2;Parent=Physo131622;constitutive=1;rank=2 scaffold_16 . CDS 806432 806452 . - 0 ID=Physo131622;Parent=Physo131622;rank=1 scaffold_16 . exon 806432 806452 . - . ID=Physo131622.1;Parent=Physo131622;constitutive=1;rank=1 scaffold_16 . repeat_region 807810 807817 . ? . description=dust scaffold_16 . repeat_region 808816 808906 . ? . description=dust scaffold_16 . repeat_region 811573 811609 . ? . description=trf scaffold_16 . repeat_region 812216 812303 . ? . description=trf scaffold_16 . repeat_region 816164 816177 . ? . description=dust scaffold_16 ensembl protein_coding_gene 814081 815065 . + . ID=Physo131623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160167;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 814081 815065 . + . ID=Physo131623;Parent=Physo131623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 814081 814554 . + 0 ID=Physo131623;Parent=Physo131623;rank=1 scaffold_16 . exon 814081 814554 . + . ID=Physo131623.1;Parent=Physo131623;constitutive=1;rank=1 scaffold_16 . CDS 814640 814924 . + 0 ID=Physo131623;Parent=Physo131623;rank=2 scaffold_16 . exon 814640 814924 . + . ID=Physo131623.2;Parent=Physo131623;constitutive=1;rank=2 scaffold_16 . CDS 814952 815065 . + 0 ID=Physo131623;Parent=Physo131623;rank=3 scaffold_16 . exon 814952 815065 . + . ID=Physo131623.3;Parent=Physo131623;constitutive=1;rank=3 scaffold_16 . biological_region 818123 818125 0.999 + . logic_name=eponine scaffold_16 . biological_region 818147 818151 0.999 - . logic_name=eponine scaffold_16 . biological_region 818231 818233 0.999 + . logic_name=eponine scaffold_16 . biological_region 818238 818244 0.999 - . logic_name=eponine scaffold_16 . biological_region 818343 818350 0.999 + . logic_name=eponine scaffold_16 . biological_region 818410 818414 0.999 + . logic_name=eponine scaffold_16 . biological_region 818437 818443 0.999 - . logic_name=eponine scaffold_16 . biological_region 818475 818478 0.999 + . logic_name=eponine scaffold_16 . biological_region 818624 818626 0.999 - . logic_name=eponine scaffold_16 . biological_region 820962 820966 0.999 + . logic_name=eponine scaffold_16 . biological_region 826744 826749 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 818039 819151 . + . ID=Physo108573;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160012;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 818039 819151 . + . ID=Physo108573;Parent=Physo108573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 818039 818119 . + . ID=Physo108573.1;Parent=Physo108573;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . exon 818295 819151 . + . ID=Physo108573.2;Parent=Physo108573;constitutive=1;ensembl_phase=-1;rank=2 scaffold_16 . CDS 818735 819151 . + 0 ID=Physo108573;Parent=Physo108573;rank=1 scaffold_16 ensembl protein_coding_gene 823263 823750 . - . ID=Physo113810;biotype=protein_coding;external_name=estExt_Genewise1.C_160132;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 823263 823750 . - . ID=Physo113810;Parent=Physo113810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 823263 823750 . - . ID=Physo113810.1;Parent=Physo113810;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 823345 823656 . - 0 ID=Physo113810;Parent=Physo113810;rank=1 scaffold_16 ensembl protein_coding_gene 819831 820232 . + . ID=Physo131625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160169;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 819831 820232 . + . ID=Physo131625;Parent=Physo131625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 819831 820232 . + 0 ID=Physo131625;Parent=Physo131625;rank=1 scaffold_16 . exon 819831 820232 . + . ID=Physo131625.1;Parent=Physo131625;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 820667 821326 . - . ID=Physo131626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160170;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 820667 821326 . - . ID=Physo131626;Parent=Physo131626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 820667 820800 . - 0 ID=Physo131626;Parent=Physo131626;rank=2 scaffold_16 . exon 820667 820800 . - . ID=Physo131626.2;Parent=Physo131626;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 820888 821326 . - 0 ID=Physo131626;Parent=Physo131626;rank=1 scaffold_16 . exon 820888 821326 . - . ID=Physo131626.1;Parent=Physo131626;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 824065 826089 . - . ID=Physo131627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160171;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 824065 826089 . - . ID=Physo131627;Parent=Physo131627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 824065 824098 . - 0 ID=Physo131627;Parent=Physo131627;rank=4 scaffold_16 . exon 824065 824098 . - . ID=Physo131627.4;Parent=Physo131627;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 824171 824434 . - 0 ID=Physo131627;Parent=Physo131627;rank=3 scaffold_16 . exon 824171 824434 . - . ID=Physo131627.3;Parent=Physo131627;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_16 . CDS 824579 824828 . - 0 ID=Physo131627;Parent=Physo131627;rank=2 scaffold_16 . exon 824579 824828 . - . ID=Physo131627.2;Parent=Physo131627;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_16 . CDS 825075 826089 . - 0 ID=Physo131627;Parent=Physo131627;rank=1 scaffold_16 . exon 825075 826089 . - . ID=Physo131627.1;Parent=Physo131627;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 826343 826807 . + . ID=Physo131628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160172;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 826343 826807 . + . ID=Physo131628;Parent=Physo131628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 826343 826807 . + 0 ID=Physo131628;Parent=Physo131628;rank=1 scaffold_16 . exon 826343 826807 . + . ID=Physo131628.1;Parent=Physo131628;constitutive=1;rank=1 scaffold_16 . repeat_region 828354 828377 . ? . description=dust scaffold_16 . repeat_region 828354 828377 . ? . description=trf scaffold_16 . repeat_region 834070 834097 . ? . description=trf scaffold_16 ensembl protein_coding_gene 827734 829396 . + . ID=Physo131629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160173;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 827734 829396 . + . ID=Physo131629;Parent=Physo131629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 827734 829326 . + 0 ID=Physo131629;Parent=Physo131629;rank=1 scaffold_16 . exon 827734 829396 . + . ID=Physo131629.1;Parent=Physo131629;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_16 ensembl protein_coding_gene 829594 831153 . - . ID=Physo131630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160174;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 829594 831153 . - . ID=Physo131630;Parent=Physo131630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 829594 831153 . - 0 ID=Physo131630;Parent=Physo131630;rank=1 scaffold_16 . exon 829594 831153 . - . ID=Physo131630.1;Parent=Physo131630;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 832026 833552 . - . ID=Physo131631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160175;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 832026 833552 . - . ID=Physo131631;Parent=Physo131631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 832026 833552 . - 0 ID=Physo131631;Parent=Physo131631;rank=1 scaffold_16 . exon 832026 833552 . - . ID=Physo131631.1;Parent=Physo131631;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 834299 836350 . - . ID=Physo131632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160176;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 834299 836350 . - . ID=Physo131632;Parent=Physo131632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 834299 836350 . - 0 ID=Physo131632;Parent=Physo131632;rank=1 scaffold_16 . exon 834299 836350 . - . ID=Physo131632.1;Parent=Physo131632;constitutive=1;rank=1 scaffold_16 . biological_region 837372 837376 0.999 + . logic_name=eponine scaffold_16 . biological_region 840166 840170 0.999 - . logic_name=eponine scaffold_16 . biological_region 840673 840675 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 839111 841498 . + . ID=Physo131633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160177;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 839111 841498 . + . ID=Physo131633;Parent=Physo131633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 839111 839268 . + 0 ID=Physo131633;Parent=Physo131633;rank=1 scaffold_16 . exon 839111 839268 . + . ID=Physo131633.1;Parent=Physo131633;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . CDS 839335 841498 . + 0 ID=Physo131633;Parent=Physo131633;rank=2 scaffold_16 . exon 839335 841498 . + . ID=Physo131633.2;Parent=Physo131633;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 ensembl protein_coding_gene 841945 843194 . - . ID=Physo131634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160178;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 841945 843194 . - . ID=Physo131634;Parent=Physo131634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 841945 842042 . - 0 ID=Physo131634;Parent=Physo131634;rank=3 scaffold_16 . exon 841945 842042 . - . ID=Physo131634.3;Parent=Physo131634;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 842281 842879 . - 0 ID=Physo131634;Parent=Physo131634;rank=2 scaffold_16 . exon 842281 842879 . - . ID=Physo131634.2;Parent=Physo131634;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_16 . CDS 843187 843194 . - 0 ID=Physo131634;Parent=Physo131634;rank=1 scaffold_16 . exon 843187 843194 . - . ID=Physo131634.1;Parent=Physo131634;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 . repeat_region 848643 848651 . ? . description=dust scaffold_16 . repeat_region 849577 849584 . ? . description=dust scaffold_16 . repeat_region 850054 850061 . ? . description=dust scaffold_16 . repeat_region 850634 850652 . ? . description=dust scaffold_16 . repeat_region 853546 853565 . ? . description=trf scaffold_16 . repeat_region 855163 855171 . ? . description=dust scaffold_16 . repeat_region 856507 856531 . ? . description=trf scaffold_16 ensembl protein_coding_gene 849656 850394 . - . ID=Physo131635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160179;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 849656 850394 . - . ID=Physo131635;Parent=Physo131635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 849656 849785 . - 0 ID=Physo131635;Parent=Physo131635;rank=4 scaffold_16 . exon 849656 849785 . - . ID=Physo131635.4;Parent=Physo131635;constitutive=1;ensembl_phase=2;rank=4 scaffold_16 . CDS 849862 849948 . - 0 ID=Physo131635;Parent=Physo131635;rank=3 scaffold_16 . exon 849862 849948 . - . ID=Physo131635.3;Parent=Physo131635;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_16 . CDS 850138 850278 . - 0 ID=Physo131635;Parent=Physo131635;rank=2 scaffold_16 . exon 850138 850278 . - . ID=Physo131635.2;Parent=Physo131635;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_16 . CDS 850357 850394 . - 0 ID=Physo131635;Parent=Physo131635;rank=1 scaffold_16 . exon 850357 850394 . - . ID=Physo131635.1;Parent=Physo131635;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_16 ensembl protein_coding_gene 856716 858002 . + . ID=Physo131636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160180;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 856716 858002 . + . ID=Physo131636;Parent=Physo131636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 856716 856904 . + 0 ID=Physo131636;Parent=Physo131636;rank=1 scaffold_16 . exon 856716 856904 . + . ID=Physo131636.1;Parent=Physo131636;constitutive=1;rank=1 scaffold_16 . CDS 856938 858002 . + 0 ID=Physo131636;Parent=Physo131636;rank=2 scaffold_16 . exon 856938 858002 . + . ID=Physo131636.2;Parent=Physo131636;constitutive=1;rank=2 scaffold_16 . biological_region 857241 857243 0.999 + . logic_name=eponine scaffold_16 . biological_region 859760 859763 0.999 - . logic_name=eponine scaffold_16 . biological_region 865028 865031 0.999 + . logic_name=eponine scaffold_16 ensembl protein_coding_gene 864903 865884 . + . ID=Physo131637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160181;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 864903 865884 . + . ID=Physo131637;Parent=Physo131637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 864903 864980 . + 0 ID=Physo131637;Parent=Physo131637;rank=1 scaffold_16 . exon 864903 864980 . + . ID=Physo131637.1;Parent=Physo131637;constitutive=1;rank=1 scaffold_16 . CDS 865116 865316 . + 0 ID=Physo131637;Parent=Physo131637;rank=2 scaffold_16 . exon 865116 865316 . + . ID=Physo131637.2;Parent=Physo131637;constitutive=1;rank=2 scaffold_16 . CDS 865438 865884 . + 0 ID=Physo131637;Parent=Physo131637;rank=3 scaffold_16 . exon 865438 865884 . + . ID=Physo131637.3;Parent=Physo131637;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 866762 867712 . + . ID=Physo131638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160182;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 866762 867712 . + . ID=Physo131638;Parent=Physo131638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 866762 867712 . + 0 ID=Physo131638;Parent=Physo131638;rank=1 scaffold_16 . exon 866762 867712 . + . ID=Physo131638.1;Parent=Physo131638;constitutive=1;rank=1 scaffold_16 . repeat_region 869914 869966 . ? . description=trf scaffold_16 ensembl protein_coding_gene 869253 870191 . + . ID=Physo131639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160183;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 869253 870191 . + . ID=Physo131639;Parent=Physo131639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 869253 870191 . + 0 ID=Physo131639;Parent=Physo131639;rank=1 scaffold_16 . exon 869253 870191 . + . ID=Physo131639.1;Parent=Physo131639;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 873811 875781 . + . ID=Physo131641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160185;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 873811 875781 . + . ID=Physo131641;Parent=Physo131641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 873811 875781 . + 0 ID=Physo131641;Parent=Physo131641;rank=1 scaffold_16 . exon 873811 875781 . + . ID=Physo131641.1;Parent=Physo131641;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 875943 876434 . - . ID=Physo131642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160186;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 875943 876434 . - . ID=Physo131642;Parent=Physo131642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 875943 876434 . - 0 ID=Physo131642;Parent=Physo131642;rank=1 scaffold_16 . exon 875943 876434 . - . ID=Physo131642.1;Parent=Physo131642;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 876992 877486 . + . ID=Physo131643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160187;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 876992 877486 . + . ID=Physo131643;Parent=Physo131643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 876992 877486 . + 0 ID=Physo131643;Parent=Physo131643;rank=1 scaffold_16 . exon 876992 877486 . + . ID=Physo131643.1;Parent=Physo131643;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 871890 872972 . + . ID=Physo156327;biotype=protein_coding;external_name=C_scaffold_16000043;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 871890 872972 . + . ID=Physo156327;Parent=Physo156327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 871890 871971 . + . ID=Physo156327.1;Parent=Physo156327;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_16 . CDS 871892 871971 . + 0 ID=Physo156327;Parent=Physo156327;rank=1 scaffold_16 . CDS 872018 872972 . + 0 ID=Physo156327;Parent=Physo156327;rank=2 scaffold_16 . exon 872018 872972 . + . ID=Physo156327.2;Parent=Physo156327;constitutive=1;ensembl_phase=2;rank=2 scaffold_16 . repeat_region 878806 878815 . ? . description=dust scaffold_16 . biological_region 880795 880797 0.999 + . logic_name=eponine scaffold_16 . biological_region 880841 880848 0.999 - . logic_name=eponine scaffold_16 . biological_region 881652 881657 0.999 - . logic_name=eponine scaffold_16 . biological_region 882066 882068 0.999 - . logic_name=eponine scaffold_16 . biological_region 882170 882171 0.999 - . logic_name=eponine scaffold_16 . biological_region 882432 882435 0.999 + . logic_name=eponine scaffold_16 . biological_region 882644 882649 0.999 - . logic_name=eponine scaffold_16 . biological_region 882710 882715 0.999 - . logic_name=eponine scaffold_16 . biological_region 883662 883665 0.999 + . logic_name=eponine scaffold_16 . biological_region 883895 883900 0.999 - . logic_name=eponine scaffold_16 ensembl protein_coding_gene 877882 878472 . + . ID=Physo131644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160188;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 877882 878472 . + . ID=Physo131644;Parent=Physo131644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 877882 878472 . + 0 ID=Physo131644;Parent=Physo131644;rank=1 scaffold_16 . exon 877882 878472 . + . ID=Physo131644.1;Parent=Physo131644;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 879251 879823 . + . ID=Physo131645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160189;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 879251 879823 . + . ID=Physo131645;Parent=Physo131645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 879251 879823 . + 0 ID=Physo131645;Parent=Physo131645;rank=1 scaffold_16 . exon 879251 879823 . + . ID=Physo131645.1;Parent=Physo131645;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 880422 881264 . + . ID=Physo131646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160190;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 880422 881264 . + . ID=Physo131646;Parent=Physo131646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 880422 881264 . + 0 ID=Physo131646;Parent=Physo131646;rank=1 scaffold_16 . exon 880422 881264 . + . ID=Physo131646.1;Parent=Physo131646;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 881531 883837 . - . ID=Physo131647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160191;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 881531 883837 . - . ID=Physo131647;Parent=Physo131647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 881531 883837 . - 0 ID=Physo131647;Parent=Physo131647;rank=1 scaffold_16 . exon 881531 883837 . - . ID=Physo131647.1;Parent=Physo131647;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 885919 886473 . + . ID=Physo131648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160192;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 885919 886473 . + . ID=Physo131648;Parent=Physo131648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 885919 886473 . + 0 ID=Physo131648;Parent=Physo131648;rank=1 scaffold_16 . exon 885919 886473 . + . ID=Physo131648.1;Parent=Physo131648;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 886609 887390 . - . ID=Physo131649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160193;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 886609 887390 . - . ID=Physo131649;Parent=Physo131649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 886609 886725 . - 0 ID=Physo131649;Parent=Physo131649;rank=4 scaffold_16 . exon 886609 886725 . - . ID=Physo131649.4;Parent=Physo131649;constitutive=1;rank=4 scaffold_16 . CDS 886798 886994 . - 0 ID=Physo131649;Parent=Physo131649;rank=3 scaffold_16 . exon 886798 886994 . - . ID=Physo131649.3;Parent=Physo131649;constitutive=1;ensembl_phase=1;rank=3 scaffold_16 . CDS 887067 887237 . - 0 ID=Physo131649;Parent=Physo131649;rank=2 scaffold_16 . CDS 887309 887390 . - 0 ID=Physo131649;Parent=Physo131649;rank=1 scaffold_16 . repeat_region 887345 887385 . ? . description=trf scaffold_16 ensembl protein_coding_gene 892357 893493 . + . ID=Physo108574;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160013;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 892357 893493 . + . ID=Physo108574;Parent=Physo108574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 892357 892518 . + 0 ID=Physo108574;Parent=Physo108574;rank=1 scaffold_16 . exon 892357 892518 . + . ID=Physo108574.1;Parent=Physo108574;constitutive=1;rank=1 scaffold_16 . CDS 892561 892707 . + 0 ID=Physo108574;Parent=Physo108574;rank=2 scaffold_16 . exon 892561 892707 . + . ID=Physo108574.2;Parent=Physo108574;constitutive=1;rank=2 scaffold_16 . CDS 892747 893493 . + 0 ID=Physo108574;Parent=Physo108574;rank=3 scaffold_16 . exon 892747 893493 . + . ID=Physo108574.3;Parent=Physo108574;constitutive=1;rank=3 scaffold_16 ensembl protein_coding_gene 891119 891660 . + . ID=Physo113823;biotype=protein_coding;external_name=estExt_Genewise1.C_160145;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 891119 891660 . + . ID=Physo113823;Parent=Physo113823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 891119 891245 . + . ID=Physo113823.1;Parent=Physo113823;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_16 . exon 891305 891660 . + . ID=Physo113823.2;Parent=Physo113823;constitutive=1;ensembl_phase=-1;rank=2 scaffold_16 . CDS 891397 891660 . + 0 ID=Physo113823;Parent=Physo113823;rank=1 scaffold_16 . exon 887067 887237 . - . ID=Physo131649.2;Parent=Physo131649;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_16 . exon 887309 887390 . - . ID=Physo131649.1;Parent=Physo131649;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 894223 896682 . + . ID=Physo131651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160195;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 894223 896682 . + . ID=Physo131651;Parent=Physo131651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 894223 896682 . + 0 ID=Physo131651;Parent=Physo131651;rank=1 scaffold_16 . exon 894223 896682 . + . ID=Physo131651.1;Parent=Physo131651;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 896798 903492 . - . ID=Physo131652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160196;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 896798 903492 . - . ID=Physo131652;Parent=Physo131652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 896798 902418 . - 0 ID=Physo131652;Parent=Physo131652;rank=2 scaffold_16 . exon 896798 902418 . - . ID=Physo131652.2;Parent=Physo131652;constitutive=1;ensembl_phase=1;rank=2 scaffold_16 . CDS 902556 903492 . - 0 ID=Physo131652;Parent=Physo131652;rank=1 scaffold_16 . biological_region 899292 899296 0.999 + . logic_name=eponine scaffold_16 . biological_region 901825 901830 0.999 + . logic_name=eponine scaffold_16 . biological_region 901898 901899 0.999 - . logic_name=eponine scaffold_16 . biological_region 903943 903943 0.999 + . logic_name=eponine scaffold_16 . repeat_region 905519 905526 . ? . description=dust scaffold_16 . exon 902556 903492 . - . ID=Physo131652.1;Parent=Physo131652;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_16 ensembl protein_coding_gene 903744 905185 . - . ID=Physo131653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160197;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 903744 905185 . - . ID=Physo131653;Parent=Physo131653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 903744 904829 . - 0 ID=Physo131653;Parent=Physo131653;rank=2 scaffold_16 . exon 903744 904829 . - . ID=Physo131653.2;Parent=Physo131653;constitutive=1;rank=2 scaffold_16 . CDS 904913 905185 . - 0 ID=Physo131653;Parent=Physo131653;rank=1 scaffold_16 . exon 904913 905185 . - . ID=Physo131653.1;Parent=Physo131653;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 905581 906261 . - . ID=Physo131654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160198;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 905581 906261 . - . ID=Physo131654;Parent=Physo131654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 905581 906219 . - 0 ID=Physo131654;Parent=Physo131654;rank=1 scaffold_16 . exon 905581 906261 . - . ID=Physo131654.1;Parent=Physo131654;constitutive=1;ensembl_phase=-1;rank=1 scaffold_16 . repeat_region 908974 908997 . ? . description=trf scaffold_16 ensembl protein_coding_gene 907263 908864 . + . ID=Physo108575;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160014;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 907263 908864 . + . ID=Physo108575;Parent=Physo108575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . exon 907263 907495 . + . ID=Physo108575.1;Parent=Physo108575;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_16 . CDS 907297 907495 . + 0 ID=Physo108575;Parent=Physo108575;rank=1 scaffold_16 . CDS 907632 908746 . + 0 ID=Physo108575;Parent=Physo108575;rank=2 scaffold_16 . exon 907632 908864 . + . ID=Physo108575.2;Parent=Physo108575;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_16 ensembl protein_coding_gene 909099 909726 . - . ID=Physo108576;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_160015;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 909099 909726 . - . ID=Physo108576;Parent=Physo108576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 909099 909389 . - 0 ID=Physo108576;Parent=Physo108576;rank=2 scaffold_16 . exon 909099 909389 . - . ID=Physo108576.2;Parent=Physo108576;constitutive=1;rank=2 scaffold_16 . CDS 909466 909726 . - 0 ID=Physo108576;Parent=Physo108576;rank=1 scaffold_16 . exon 909466 909726 . - . ID=Physo108576.1;Parent=Physo108576;constitutive=1;rank=1 scaffold_16 ensembl protein_coding_gene 911555 912603 . + . ID=Physo131657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160201;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 911555 912603 . + . ID=Physo131657;Parent=Physo131657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 911555 912451 . + 0 ID=Physo131657;Parent=Physo131657;rank=1 scaffold_16 . exon 911555 912451 . + . ID=Physo131657.1;Parent=Physo131657;constitutive=1;rank=1 scaffold_16 . CDS 912496 912603 . + 0 ID=Physo131657;Parent=Physo131657;rank=2 scaffold_16 . exon 912496 912603 . + . ID=Physo131657.2;Parent=Physo131657;constitutive=1;rank=2 scaffold_16 ensembl protein_coding_gene 914147 915254 . - . ID=Physo131658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_160202;logic_name=jgi_physo1_1 scaffold_16 ensembl transcript 914147 915254 . - . ID=Physo131658;Parent=Physo131658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_16 . CDS 914147 915136 . - 0 ID=Physo131658;Parent=Physo131658;rank=1 scaffold_16 . exon 914147 915254 . - . ID=Physo131658.1;Parent=Physo131658;constitutive=1;ensembl_phase=-1;rank=1 ##gff-version 3 ##sequence-region scaffold_11 1 935862 scaffold_11 . repeat_region 5 1997 . - . description=GypsyPi-1c_I-int scaffold_11 . biological_region 2530 2534 0.999 + . logic_name=eponine scaffold_11 . biological_region 2570 2572 0.999 + . logic_name=eponine scaffold_11 . biological_region 2596 2599 0.999 - . logic_name=eponine scaffold_11 . biological_region 2665 2668 0.999 - . logic_name=eponine scaffold_11 . biological_region 6943 6944 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 619 1428 . - . ID=Physo108470;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110001;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 619 1428 . - . ID=Physo108470;Parent=Physo108470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 619 1428 . - 0 ID=Physo108470;Parent=Physo108470;rank=1 scaffold_11 . exon 619 1428 . - . ID=Physo108470.1;Parent=Physo108470;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 1532 3451 . - . ID=Physo130333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110002;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 1532 3451 . - . ID=Physo130333;Parent=Physo130333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 1532 2116 . - 0 ID=Physo130333;Parent=Physo130333;rank=3 scaffold_11 . exon 1532 2116 . - . ID=Physo130333.3;Parent=Physo130333;constitutive=1;rank=3 scaffold_11 . CDS 2468 2688 . - 0 ID=Physo130333;Parent=Physo130333;rank=2 scaffold_11 . exon 2468 2688 . - . ID=Physo130333.2;Parent=Physo130333;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 2908 3451 . - 0 ID=Physo130333;Parent=Physo130333;rank=1 scaffold_11 . exon 2908 3451 . - . ID=Physo130333.1;Parent=Physo130333;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 5840 7487 . + . ID=Physo130334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110003;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 5840 7487 . + . ID=Physo130334;Parent=Physo130334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 5840 6002 . + 0 ID=Physo130334;Parent=Physo130334;rank=1 scaffold_11 . exon 5840 6002 . + . ID=Physo130334.1;Parent=Physo130334;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 6777 6844 . + 0 ID=Physo130334;Parent=Physo130334;rank=2 scaffold_11 . exon 6777 6844 . + . ID=Physo130334.2;Parent=Physo130334;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 6920 7014 . + 0 ID=Physo130334;Parent=Physo130334;rank=3 scaffold_11 . exon 6920 7014 . + . ID=Physo130334.3;Parent=Physo130334;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 7199 7487 . + 0 ID=Physo130334;Parent=Physo130334;rank=4 scaffold_11 . exon 7199 7487 . + . ID=Physo130334.4;Parent=Physo130334;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . repeat_region 19408 19424 . ? . description=dust scaffold_11 ensembl protein_coding_gene 11736 14321 . + . ID=Physo130335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110004;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 11736 14321 . + . ID=Physo130335;Parent=Physo130335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 11736 14321 . + 0 ID=Physo130335;Parent=Physo130335;rank=1 scaffold_11 . exon 11736 14321 . + . ID=Physo130335.1;Parent=Physo130335;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 14901 16862 . + . ID=Physo130336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110005;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 14901 16862 . + . ID=Physo130336;Parent=Physo130336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 14901 16862 . + 0 ID=Physo130336;Parent=Physo130336;rank=1 scaffold_11 . exon 14901 16862 . + . ID=Physo130336.1;Parent=Physo130336;constitutive=1;rank=1 scaffold_11 . repeat_region 28151 28174 . ? . description=trf scaffold_11 ensembl protein_coding_gene 26196 28247 . + . ID=Physo130337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110006;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 26196 28247 . + . ID=Physo130337;Parent=Physo130337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 26196 28247 . + 0 ID=Physo130337;Parent=Physo130337;rank=1 scaffold_11 . exon 26196 28247 . + . ID=Physo130337.1;Parent=Physo130337;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 28423 30782 . - . ID=Physo130338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110007;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 28423 30782 . - . ID=Physo130338;Parent=Physo130338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 28423 29826 . - 0 ID=Physo130338;Parent=Physo130338;rank=2 scaffold_11 . exon 28423 29826 . - . ID=Physo130338.2;Parent=Physo130338;constitutive=1;rank=2 scaffold_11 . CDS 29895 30782 . - 0 ID=Physo130338;Parent=Physo130338;rank=1 scaffold_11 . biological_region 31267 31269 0.999 + . logic_name=eponine scaffold_11 . biological_region 33103 33109 0.999 + . logic_name=eponine scaffold_11 . biological_region 33668 33669 0.999 + . logic_name=eponine scaffold_11 . biological_region 34201 34204 0.999 - . logic_name=eponine scaffold_11 . biological_region 34272 34273 0.999 - . logic_name=eponine scaffold_11 . biological_region 36096 36097 0.999 - . logic_name=eponine scaffold_11 . exon 29895 30782 . - . ID=Physo130338.1;Parent=Physo130338;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 31223 32087 . - . ID=Physo130339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110008;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 31223 32087 . - . ID=Physo130339;Parent=Physo130339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 31223 32062 . - 0 ID=Physo130339;Parent=Physo130339;rank=1 scaffold_11 . exon 31223 32087 . - . ID=Physo130339.1;Parent=Physo130339;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 ensembl protein_coding_gene 32316 33422 . - . ID=Physo130340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110009;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 32316 33422 . - . ID=Physo130340;Parent=Physo130340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 32316 33422 . - 0 ID=Physo130340;Parent=Physo130340;rank=1 scaffold_11 . exon 32316 33422 . - . ID=Physo130340.1;Parent=Physo130340;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 35374 36626 . - . ID=Physo130341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110010;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 35374 36626 . - . ID=Physo130341;Parent=Physo130341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 35374 35379 . - 0 ID=Physo130341;Parent=Physo130341;rank=2 scaffold_11 . exon 35374 35379 . - . ID=Physo130341.2;Parent=Physo130341;constitutive=1;rank=2 scaffold_11 . CDS 35655 36626 . - 0 ID=Physo130341;Parent=Physo130341;rank=1 scaffold_11 . exon 35655 36626 . - . ID=Physo130341.1;Parent=Physo130341;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 39460 47096 . + . ID=Physo156107;biotype=protein_coding;external_name=C_scaffold_11000002;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 39460 47096 . + . ID=Physo156107;Parent=Physo156107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 39460 39616 . + 0 ID=Physo156107;Parent=Physo156107;rank=1 scaffold_11 . exon 39460 39616 . + . ID=Physo156107.1;Parent=Physo156107;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 39761 40077 . + 0 ID=Physo156107;Parent=Physo156107;rank=2 scaffold_11 . exon 39761 40077 . + . ID=Physo156107.2;Parent=Physo156107;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 40268 40595 . + 0 ID=Physo156107;Parent=Physo156107;rank=3 scaffold_11 . CDS 40638 40847 . + 0 ID=Physo156107;Parent=Physo156107;rank=4 scaffold_11 . CDS 41088 41498 . + 0 ID=Physo156107;Parent=Physo156107;rank=5 scaffold_11 . CDS 41520 41613 . + 0 ID=Physo156107;Parent=Physo156107;rank=6 scaffold_11 . CDS 41688 41743 . + 0 ID=Physo156107;Parent=Physo156107;rank=7 scaffold_11 . CDS 41868 42215 . + 0 ID=Physo156107;Parent=Physo156107;rank=8 scaffold_11 . CDS 42255 42580 . + 0 ID=Physo156107;Parent=Physo156107;rank=9 scaffold_11 . CDS 42665 42925 . + 0 ID=Physo156107;Parent=Physo156107;rank=10 scaffold_11 . CDS 42947 43454 . + 0 ID=Physo156107;Parent=Physo156107;rank=11 scaffold_11 . CDS 43491 44005 . + 0 ID=Physo156107;Parent=Physo156107;rank=12 scaffold_11 . CDS 44744 45530 . + 0 ID=Physo156107;Parent=Physo156107;rank=13 scaffold_11 . CDS 45573 45658 . + 0 ID=Physo156107;Parent=Physo156107;rank=14 scaffold_11 . CDS 45716 45827 . + 0 ID=Physo156107;Parent=Physo156107;rank=15 scaffold_11 . CDS 45849 46560 . + 0 ID=Physo156107;Parent=Physo156107;rank=16 scaffold_11 . CDS 46625 46685 . + 0 ID=Physo156107;Parent=Physo156107;rank=17 scaffold_11 . CDS 46758 46886 . + 0 ID=Physo156107;Parent=Physo156107;rank=18 scaffold_11 . CDS 46917 47096 . + 0 ID=Physo156107;Parent=Physo156107;rank=19 scaffold_11 ensembl protein_coding_gene 47186 49915 . - . ID=Physo130344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110013;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 47186 49915 . - . ID=Physo130344;Parent=Physo130344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 47186 49915 . - 0 ID=Physo130344;Parent=Physo130344;rank=1 scaffold_11 . exon 47186 49915 . - . ID=Physo130344.1;Parent=Physo130344;constitutive=1;rank=1 scaffold_11 . exon 40268 40595 . + . ID=Physo156107.3;Parent=Physo156107;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . exon 40638 40847 . + . ID=Physo156107.4;Parent=Physo156107;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_11 . exon 41088 41498 . + . ID=Physo156107.5;Parent=Physo156107;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_11 . exon 41520 41613 . + . ID=Physo156107.6;Parent=Physo156107;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_11 . exon 41688 41743 . + . ID=Physo156107.7;Parent=Physo156107;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_11 . exon 41868 42215 . + . ID=Physo156107.8;Parent=Physo156107;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_11 . exon 42255 42580 . + . ID=Physo156107.9;Parent=Physo156107;constitutive=1;ensembl_phase=1;rank=9 scaffold_11 . exon 42665 42925 . + . ID=Physo156107.10;Parent=Physo156107;constitutive=1;rank=10 scaffold_11 . exon 42947 43454 . + . ID=Physo156107.11;Parent=Physo156107;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_11 . exon 43491 44005 . + . ID=Physo156107.12;Parent=Physo156107;constitutive=1;ensembl_phase=1;rank=12 scaffold_11 . exon 44744 45530 . + . ID=Physo156107.13;Parent=Physo156107;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_11 . exon 45573 45658 . + . ID=Physo156107.14;Parent=Physo156107;constitutive=1;ensembl_phase=1;rank=14 scaffold_11 . exon 45716 45827 . + . ID=Physo156107.15;Parent=Physo156107;constitutive=1;ensembl_end_phase=1;rank=15 scaffold_11 . exon 45849 46560 . + . ID=Physo156107.16;Parent=Physo156107;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=16 scaffold_11 . exon 46625 46685 . + . ID=Physo156107.17;Parent=Physo156107;constitutive=1;ensembl_phase=2;rank=17 scaffold_11 . exon 46758 46886 . + . ID=Physo156107.18;Parent=Physo156107;constitutive=1;rank=18 scaffold_11 . exon 46917 47096 . + . ID=Physo156107.19;Parent=Physo156107;constitutive=1;rank=19 scaffold_11 . repeat_region 50079 50089 . ? . description=dust scaffold_11 . biological_region 52168 52170 0.999 + . logic_name=eponine scaffold_11 . biological_region 52561 52568 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 51336 54605 . + . ID=Physo130345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110014;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 51336 54605 . + . ID=Physo130345;Parent=Physo130345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 51336 54605 . + 0 ID=Physo130345;Parent=Physo130345;rank=1 scaffold_11 . exon 51336 54605 . + . ID=Physo130345.1;Parent=Physo130345;constitutive=1;rank=1 scaffold_11 . repeat_region 63119 63148 . ? . description=trf scaffold_11 ensembl protein_coding_gene 65278 66003 . + . ID=Physo130348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110017;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 65278 66003 . + . ID=Physo130348;Parent=Physo130348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 65278 66003 . + 0 ID=Physo130348;Parent=Physo130348;rank=1 scaffold_11 . exon 65278 66003 . + . ID=Physo130348.1;Parent=Physo130348;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 66531 67283 . + . ID=Physo130349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110018;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 66531 67283 . + . ID=Physo130349;Parent=Physo130349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 66531 67283 . + 0 ID=Physo130349;Parent=Physo130349;rank=1 scaffold_11 . exon 66531 67283 . + . ID=Physo130349.1;Parent=Physo130349;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 67995 69862 . + . ID=Physo130350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110019;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 67995 69862 . + . ID=Physo130350;Parent=Physo130350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 67995 69078 . + 0 ID=Physo130350;Parent=Physo130350;rank=1 scaffold_11 . exon 67995 69078 . + . ID=Physo130350.1;Parent=Physo130350;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 69331 69662 . + 0 ID=Physo130350;Parent=Physo130350;rank=2 scaffold_11 . exon 69331 69662 . + . ID=Physo130350.2;Parent=Physo130350;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 69839 69862 . + 0 ID=Physo130350;Parent=Physo130350;rank=3 scaffold_11 ensembl protein_coding_gene 60614 63109 . + . ID=Physo156109;biotype=protein_coding;external_name=C_scaffold_11000004;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 60614 63109 . + . ID=Physo156109;Parent=Physo156109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 60614 60892 . + 0 ID=Physo156109;Parent=Physo156109;rank=1 scaffold_11 . exon 60614 60892 . + . ID=Physo156109.1;Parent=Physo156109;constitutive=1;rank=1 scaffold_11 . CDS 60938 61528 . + 0 ID=Physo156109;Parent=Physo156109;rank=2 scaffold_11 . exon 60938 61528 . + . ID=Physo156109.2;Parent=Physo156109;constitutive=1;rank=2 scaffold_11 . CDS 61967 63109 . + 0 ID=Physo156109;Parent=Physo156109;rank=3 scaffold_11 . exon 61967 63109 . + . ID=Physo156109.3;Parent=Physo156109;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 63230 64375 . - . ID=Physo156110;biotype=protein_coding;description=Calcium/calmodulin dependent protein kinase 1 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U5];external_name=C_scaffold_11000005;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 63230 64375 . - . ID=Physo156110;Parent=Physo156110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 63230 64375 . - 0 ID=Physo156110;Parent=Physo156110;rank=1 scaffold_11 . exon 63230 64375 . - . ID=Physo156110.1;Parent=Physo156110;constitutive=1;rank=1 scaffold_11 . biological_region 70938 70943 0.999 + . logic_name=eponine scaffold_11 . biological_region 71072 71075 0.999 + . logic_name=eponine scaffold_11 . biological_region 71085 71088 0.999 + . logic_name=eponine scaffold_11 . biological_region 71085 71093 0.999 - . logic_name=eponine scaffold_11 . biological_region 71096 71100 0.999 - . logic_name=eponine scaffold_11 . biological_region 71749 71751 0.999 + . logic_name=eponine scaffold_11 . repeat_region 72640 72703 . ? . description=dust scaffold_11 . repeat_region 72997 73053 . ? . description=dust scaffold_11 . repeat_region 73376 73435 . ? . description=dust scaffold_11 . repeat_region 73728 73791 . ? . description=dust scaffold_11 . repeat_region 74113 74167 . ? . description=dust scaffold_11 . repeat_region 74461 74617 . + . description=(CAG)n scaffold_11 . biological_region 76520 76523 0.999 + . logic_name=eponine scaffold_11 . biological_region 76602 76602 0.999 - . logic_name=eponine scaffold_11 . biological_region 76638 76643 0.999 - . logic_name=eponine scaffold_11 . biological_region 76686 76693 0.999 - . logic_name=eponine scaffold_11 . biological_region 76695 76696 0.999 + . logic_name=eponine scaffold_11 . biological_region 76704 76711 0.999 - . logic_name=eponine scaffold_11 . biological_region 77391 77391 0.999 - . logic_name=eponine scaffold_11 . biological_region 77655 77658 0.999 - . logic_name=eponine scaffold_11 . biological_region 78207 78209 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 77927 82218 . - . ID=Physo113019;biotype=protein_coding;external_name=estExt_Genewise1.C_110195;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 77927 82218 . - . ID=Physo113019;Parent=Physo113019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 77927 79301 . - . ID=Physo113019.4;Parent=Physo113019;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_11 . CDS 78550 79301 . - 0 ID=Physo113019;Parent=Physo113019;rank=4 scaffold_11 . CDS 80188 80269 . - 0 ID=Physo113019;Parent=Physo113019;rank=3 scaffold_11 . CDS 80350 81143 . - 0 ID=Physo113019;Parent=Physo113019;rank=2 scaffold_11 . CDS 81225 82209 . - 0 ID=Physo113019;Parent=Physo113019;rank=1 scaffold_11 . exon 69839 69862 . + . ID=Physo130350.3;Parent=Physo130350;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 70360 76883 . - . ID=Physo130351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110020;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 70360 76883 . - . ID=Physo130351;Parent=Physo130351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 70360 74574 . - 0 ID=Physo130351;Parent=Physo130351;rank=8 scaffold_11 . exon 70360 74574 . - . ID=Physo130351.8;Parent=Physo130351;constitutive=1;rank=8 scaffold_11 . CDS 74612 74785 . - 0 ID=Physo130351;Parent=Physo130351;rank=7 scaffold_11 . exon 74612 74785 . - . ID=Physo130351.7;Parent=Physo130351;constitutive=1;rank=7 scaffold_11 . CDS 74979 75292 . - 0 ID=Physo130351;Parent=Physo130351;rank=6 scaffold_11 . exon 74979 75292 . - . ID=Physo130351.6;Parent=Physo130351;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 75371 75466 . - 0 ID=Physo130351;Parent=Physo130351;rank=5 scaffold_11 . exon 75371 75466 . - . ID=Physo130351.5;Parent=Physo130351;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_11 . CDS 75533 75664 . - 0 ID=Physo130351;Parent=Physo130351;rank=4 scaffold_11 . exon 75533 75664 . - . ID=Physo130351.4;Parent=Physo130351;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 75738 75809 . - 0 ID=Physo130351;Parent=Physo130351;rank=3 scaffold_11 . exon 75738 75809 . - . ID=Physo130351.3;Parent=Physo130351;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 75904 76794 . - 0 ID=Physo130351;Parent=Physo130351;rank=2 scaffold_11 . exon 75904 76794 . - . ID=Physo130351.2;Parent=Physo130351;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 76874 76883 . - 0 ID=Physo130351;Parent=Physo130351;rank=1 scaffold_11 . exon 76874 76883 . - . ID=Physo130351.1;Parent=Physo130351;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . exon 80188 80269 . - . ID=Physo113019.3;Parent=Physo113019;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . exon 80350 81143 . - . ID=Physo113019.2;Parent=Physo113019;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . exon 81225 82218 . - . ID=Physo113019.1;Parent=Physo113019;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_11 ensembl protein_coding_gene 85505 86206 . + . ID=Physo130353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110022;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 85505 86206 . + . ID=Physo130353;Parent=Physo130353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 85505 85533 . + 0 ID=Physo130353;Parent=Physo130353;rank=1 scaffold_11 . exon 85505 85533 . + . ID=Physo130353.1;Parent=Physo130353;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 85593 85828 . + 0 ID=Physo130353;Parent=Physo130353;rank=2 scaffold_11 . exon 85593 85828 . + . ID=Physo130353.2;Parent=Physo130353;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 85858 85991 . + 0 ID=Physo130353;Parent=Physo130353;rank=3 scaffold_11 . exon 85858 85991 . + . ID=Physo130353.3;Parent=Physo130353;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 86090 86206 . + 0 ID=Physo130353;Parent=Physo130353;rank=4 scaffold_11 . exon 86090 86206 . + . ID=Physo130353.4;Parent=Physo130353;constitutive=1;rank=4 scaffold_11 . repeat_region 90422 90920 . ? . description=dust scaffold_11 . repeat_region 91673 91702 . ? . description=trf scaffold_11 . repeat_region 91916 91965 . ? . description=dust scaffold_11 . repeat_region 92312 92349 . ? . description=trf scaffold_11 . repeat_region 92796 92825 . ? . description=trf scaffold_11 . repeat_region 93503 93552 . ? . description=dust scaffold_11 . repeat_region 94642 94691 . ? . description=dust scaffold_11 . repeat_region 95210 95247 . ? . description=trf scaffold_11 . repeat_region 95694 95723 . ? . description=trf scaffold_11 . biological_region 98531 98532 0.999 + . logic_name=eponine scaffold_11 . repeat_region 99350 99435 . ? . description=trf scaffold_11 ensembl protein_coding_gene 92116 92496 . - . ID=Physo130354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110023;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 92116 92496 . - . ID=Physo130354;Parent=Physo130354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 92116 92496 . - 0 ID=Physo130354;Parent=Physo130354;rank=1 scaffold_11 . exon 92116 92496 . - . ID=Physo130354.1;Parent=Physo130354;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 95014 95394 . - . ID=Physo130355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110024;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 95014 95394 . - . ID=Physo130355;Parent=Physo130355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 95014 95394 . - 0 ID=Physo130355;Parent=Physo130355;rank=1 scaffold_11 . exon 95014 95394 . - . ID=Physo130355.1;Parent=Physo130355;constitutive=1;rank=1 scaffold_11 . repeat_region 104326 104393 . + . description=Sola3-2_PS scaffold_11 ensembl protein_coding_gene 107453 110686 . - . ID=Physo113024;biotype=protein_coding;external_name=estExt_Genewise1.C_110200;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 107453 110686 . - . ID=Physo113024;Parent=Physo113024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 107453 107764 . - 0 ID=Physo113024;Parent=Physo113024;rank=4 scaffold_11 . exon 107453 107764 . - . ID=Physo113024.4;Parent=Physo113024;constitutive=1;rank=4 scaffold_11 . CDS 107822 108208 . - 0 ID=Physo113024;Parent=Physo113024;rank=3 scaffold_11 . exon 107822 108208 . - . ID=Physo113024.3;Parent=Physo113024;constitutive=1;rank=3 scaffold_11 . CDS 108875 108969 . - 0 ID=Physo113024;Parent=Physo113024;rank=2 scaffold_11 . exon 108875 108969 . - . ID=Physo113024.2;Parent=Physo113024;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 109903 110686 . - 0 ID=Physo113024;Parent=Physo113024;rank=1 scaffold_11 . biological_region 110770 110776 0.999 + . logic_name=eponine scaffold_11 . biological_region 111852 111854 0.999 + . logic_name=eponine scaffold_11 . biological_region 112071 112073 0.999 + . logic_name=eponine scaffold_11 . repeat_region 114806 114848 . ? . description=trf scaffold_11 . biological_region 116886 116888 0.999 + . logic_name=eponine scaffold_11 . repeat_region 118930 118939 . ? . description=dust scaffold_11 . exon 109903 110686 . - . ID=Physo113024.1;Parent=Physo113024;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 116877 118136 . + . ID=Physo130357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110026;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 116877 118136 . + . ID=Physo130357;Parent=Physo130357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 116877 118136 . + 0 ID=Physo130357;Parent=Physo130357;rank=1 scaffold_11 . exon 116877 118136 . + . ID=Physo130357.1;Parent=Physo130357;constitutive=1;rank=1 scaffold_11 . repeat_region 122606 122717 . + . description=(TCG)n scaffold_11 ensembl protein_coding_gene 125003 126198 . + . ID=Physo108472;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110003;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 125003 126198 . + . ID=Physo108472;Parent=Physo108472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 125003 125234 . + . ID=Physo108472.1;Parent=Physo108472;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_11 . CDS 125020 125234 . + 0 ID=Physo108472;Parent=Physo108472;rank=1 scaffold_11 . CDS 125309 125806 . + 0 ID=Physo108472;Parent=Physo108472;rank=2 scaffold_11 . exon 125309 125806 . + . ID=Physo108472.2;Parent=Physo108472;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 125883 126198 . + 0 ID=Physo108472;Parent=Physo108472;rank=3 scaffold_11 . exon 125883 126198 . + . ID=Physo108472.3;Parent=Physo108472;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 ensembl protein_coding_gene 120165 122431 . + . ID=Physo130358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110027;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 120165 122431 . + . ID=Physo130358;Parent=Physo130358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 120165 120225 . + 0 ID=Physo130358;Parent=Physo130358;rank=1 scaffold_11 . exon 120165 120225 . + . ID=Physo130358.1;Parent=Physo130358;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 120297 120447 . + 0 ID=Physo130358;Parent=Physo130358;rank=2 scaffold_11 . exon 120297 120447 . + . ID=Physo130358.2;Parent=Physo130358;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 120521 120591 . + 0 ID=Physo130358;Parent=Physo130358;rank=3 scaffold_11 . exon 120521 120591 . + . ID=Physo130358.3;Parent=Physo130358;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 120652 120707 . + 0 ID=Physo130358;Parent=Physo130358;rank=4 scaffold_11 . exon 120652 120707 . + . ID=Physo130358.4;Parent=Physo130358;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 120779 121190 . + 0 ID=Physo130358;Parent=Physo130358;rank=5 scaffold_11 . exon 120779 121190 . + . ID=Physo130358.5;Parent=Physo130358;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 121248 122120 . + 0 ID=Physo130358;Parent=Physo130358;rank=6 scaffold_11 . exon 121248 122120 . + . ID=Physo130358.6;Parent=Physo130358;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 122184 122431 . + 0 ID=Physo130358;Parent=Physo130358;rank=7 scaffold_11 . exon 122184 122431 . + . ID=Physo130358.7;Parent=Physo130358;constitutive=1;ensembl_phase=1;rank=7 scaffold_11 ensembl protein_coding_gene 122578 124833 . - . ID=Physo130359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110028;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 122578 124833 . - . ID=Physo130359;Parent=Physo130359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 122578 124833 . - 0 ID=Physo130359;Parent=Physo130359;rank=1 scaffold_11 . exon 122578 124833 . - . ID=Physo130359.1;Parent=Physo130359;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 129300 130920 . + . ID=Physo130361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110030;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 129300 130920 . + . ID=Physo130361;Parent=Physo130361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 129300 129465 . + 0 ID=Physo130361;Parent=Physo130361;rank=1 scaffold_11 . exon 129300 129465 . + . ID=Physo130361.1;Parent=Physo130361;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 129593 130155 . + 0 ID=Physo130361;Parent=Physo130361;rank=2 scaffold_11 . CDS 130242 130401 . + 0 ID=Physo130361;Parent=Physo130361;rank=3 scaffold_11 . CDS 130481 130920 . + 0 ID=Physo130361;Parent=Physo130361;rank=4 scaffold_11 . repeat_region 131498 131513 . ? . description=dust scaffold_11 . repeat_region 132338 132368 . ? . description=dust scaffold_11 . biological_region 132594 132597 0.999 + . logic_name=eponine scaffold_11 . biological_region 132656 132658 0.999 + . logic_name=eponine scaffold_11 . biological_region 139259 139261 0.999 + . logic_name=eponine scaffold_11 . biological_region 139333 139335 0.999 + . logic_name=eponine scaffold_11 . biological_region 139358 139361 0.999 - . logic_name=eponine scaffold_11 . exon 129593 130155 . + . ID=Physo130361.2;Parent=Physo130361;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . exon 130242 130401 . + . ID=Physo130361.3;Parent=Physo130361;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . exon 130481 130920 . + . ID=Physo130361.4;Parent=Physo130361;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 ensembl protein_coding_gene 131031 132325 . - . ID=Physo130362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110031;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 131031 132325 . - . ID=Physo130362;Parent=Physo130362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 131031 131435 . - . ID=Physo130362.2;Parent=Physo130362;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_11 . CDS 131213 131435 . - 0 ID=Physo130362;Parent=Physo130362;rank=2 scaffold_11 . CDS 131526 132325 . - 0 ID=Physo130362;Parent=Physo130362;rank=1 scaffold_11 . exon 131526 132325 . - . ID=Physo130362.1;Parent=Physo130362;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 138254 139100 . - . ID=Physo130363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110032;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 138254 139100 . - . ID=Physo130363;Parent=Physo130363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 138254 138581 . - . ID=Physo130363.4;Parent=Physo130363;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_11 . CDS 138452 138581 . - 0 ID=Physo130363;Parent=Physo130363;rank=4 scaffold_11 . CDS 138668 138789 . - 0 ID=Physo130363;Parent=Physo130363;rank=3 scaffold_11 . exon 138668 138789 . - . ID=Physo130363.3;Parent=Physo130363;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 138873 138965 . - 0 ID=Physo130363;Parent=Physo130363;rank=2 scaffold_11 . exon 138873 138965 . - . ID=Physo130363.2;Parent=Physo130363;constitutive=1;rank=2 scaffold_11 . CDS 139050 139100 . - 0 ID=Physo130363;Parent=Physo130363;rank=1 scaffold_11 . exon 139050 139100 . - . ID=Physo130363.1;Parent=Physo130363;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 139534 140460 . + . ID=Physo108473;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110004;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 139534 140460 . + . ID=Physo108473;Parent=Physo108473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 139534 139598 . + 0 ID=Physo108473;Parent=Physo108473;rank=1 scaffold_11 . exon 139534 139598 . + . ID=Physo108473.1;Parent=Physo108473;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 139680 139735 . + 0 ID=Physo108473;Parent=Physo108473;rank=2 scaffold_11 . exon 139680 139735 . + . ID=Physo108473.2;Parent=Physo108473;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 139841 139975 . + 0 ID=Physo108473;Parent=Physo108473;rank=3 scaffold_11 . exon 139841 139975 . + . ID=Physo108473.3;Parent=Physo108473;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 140075 140199 . + 0 ID=Physo108473;Parent=Physo108473;rank=4 scaffold_11 . exon 140075 140199 . + . ID=Physo108473.4;Parent=Physo108473;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 140275 140460 . + 0 ID=Physo108473;Parent=Physo108473;rank=5 scaffold_11 . exon 140275 140460 . + . ID=Physo108473.5;Parent=Physo108473;constitutive=1;rank=5 scaffold_11 ensembl protein_coding_gene 142961 149119 . + . ID=Physo130365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110034;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 142961 149119 . + . ID=Physo130365;Parent=Physo130365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 142961 149119 . + 0 ID=Physo130365;Parent=Physo130365;rank=1 scaffold_11 . exon 142961 149119 . + . ID=Physo130365.1;Parent=Physo130365;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 149331 164642 . - . ID=Physo130366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110035;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 149331 164642 . - . ID=Physo130366;Parent=Physo130366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 149331 149466 . - 0 ID=Physo130366;Parent=Physo130366;rank=11 scaffold_11 . exon 149331 149466 . - . ID=Physo130366.11;Parent=Physo130366;constitutive=1;ensembl_phase=2;rank=11 scaffold_11 . CDS 149540 149901 . - 0 ID=Physo130366;Parent=Physo130366;rank=10 scaffold_11 . CDS 149979 150104 . - 0 ID=Physo130366;Parent=Physo130366;rank=9 scaffold_11 . CDS 150188 151499 . - 0 ID=Physo130366;Parent=Physo130366;rank=8 scaffold_11 . CDS 151571 151620 . - 0 ID=Physo130366;Parent=Physo130366;rank=7 scaffold_11 . CDS 151701 151727 . - 0 ID=Physo130366;Parent=Physo130366;rank=6 scaffold_11 . CDS 151835 151892 . - 0 ID=Physo130366;Parent=Physo130366;rank=5 scaffold_11 . CDS 152036 152619 . - 0 ID=Physo130366;Parent=Physo130366;rank=4 scaffold_11 . CDS 152688 153411 . - 0 ID=Physo130366;Parent=Physo130366;rank=3 scaffold_11 . CDS 153449 153471 . - 0 ID=Physo130366;Parent=Physo130366;rank=2 scaffold_11 . CDS 153564 164642 . - 0 ID=Physo130366;Parent=Physo130366;rank=1 scaffold_11 . biological_region 154704 154707 0.999 - . logic_name=eponine scaffold_11 . biological_region 154759 154761 0.999 + . logic_name=eponine scaffold_11 . exon 149540 149901 . - . ID=Physo130366.10;Parent=Physo130366;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_11 . exon 149979 150104 . - . ID=Physo130366.9;Parent=Physo130366;constitutive=1;rank=9 scaffold_11 . exon 150188 151499 . - . ID=Physo130366.8;Parent=Physo130366;constitutive=1;ensembl_phase=2;rank=8 scaffold_11 . exon 151571 151620 . - . ID=Physo130366.7;Parent=Physo130366;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_11 . exon 151701 151727 . - . ID=Physo130366.6;Parent=Physo130366;constitutive=1;rank=6 scaffold_11 . exon 151835 151892 . - . ID=Physo130366.5;Parent=Physo130366;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . exon 152036 152619 . - . ID=Physo130366.4;Parent=Physo130366;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_11 . exon 152688 153411 . - . ID=Physo130366.3;Parent=Physo130366;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . exon 153449 153471 . - . ID=Physo130366.2;Parent=Physo130366;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . exon 153564 164642 . - . ID=Physo130366.1;Parent=Physo130366;constitutive=1;rank=1 scaffold_11 . repeat_region 165385 165392 . ? . description=dust scaffold_11 ensembl protein_coding_gene 166775 167934 . + . ID=Physo108474;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110005;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 166775 167934 . + . ID=Physo108474;Parent=Physo108474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 166775 167934 . + . ID=Physo108474.1;Parent=Physo108474;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 166862 167845 . + 0 ID=Physo108474;Parent=Physo108474;rank=1 scaffold_11 ensembl protein_coding_gene 149331 164642 . - . ID=Physo130366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110035;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 149331 164642 . - . ID=Physo130366;Parent=Physo130366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 149331 149466 . - 0 ID=Physo130366;Parent=Physo130366;rank=11 scaffold_11 . CDS 149540 149901 . - 0 ID=Physo130366;Parent=Physo130366;rank=10 scaffold_11 . CDS 149979 150104 . - 0 ID=Physo130366;Parent=Physo130366;rank=9 scaffold_11 . CDS 150188 151499 . - 0 ID=Physo130366;Parent=Physo130366;rank=8 scaffold_11 . CDS 151571 151620 . - 0 ID=Physo130366;Parent=Physo130366;rank=7 scaffold_11 . CDS 151701 151727 . - 0 ID=Physo130366;Parent=Physo130366;rank=6 scaffold_11 . CDS 151835 151892 . - 0 ID=Physo130366;Parent=Physo130366;rank=5 scaffold_11 . CDS 152036 152619 . - 0 ID=Physo130366;Parent=Physo130366;rank=4 scaffold_11 . CDS 152688 153411 . - 0 ID=Physo130366;Parent=Physo130366;rank=3 scaffold_11 . CDS 153449 153471 . - 0 ID=Physo130366;Parent=Physo130366;rank=2 scaffold_11 . CDS 153564 164642 . - 0 ID=Physo130366;Parent=Physo130366;rank=1 scaffold_11 ensembl protein_coding_gene 165118 166626 . - . ID=Physo130367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110036;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 165118 166626 . - . ID=Physo130367;Parent=Physo130367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 165118 165216 . - 0 ID=Physo130367;Parent=Physo130367;rank=6 scaffold_11 . exon 165118 165216 . - . ID=Physo130367.6;Parent=Physo130367;constitutive=1;rank=6 scaffold_11 . CDS 165278 165365 . - 0 ID=Physo130367;Parent=Physo130367;rank=5 scaffold_11 . exon 165278 165365 . - . ID=Physo130367.5;Parent=Physo130367;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 165435 165574 . - 0 ID=Physo130367;Parent=Physo130367;rank=4 scaffold_11 . exon 165435 165574 . - . ID=Physo130367.4;Parent=Physo130367;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_11 . CDS 165653 165904 . - 0 ID=Physo130367;Parent=Physo130367;rank=3 scaffold_11 . exon 165653 165904 . - . ID=Physo130367.3;Parent=Physo130367;constitutive=1;rank=3 scaffold_11 . CDS 165980 166379 . - 0 ID=Physo130367;Parent=Physo130367;rank=2 scaffold_11 . exon 165980 166379 . - . ID=Physo130367.2;Parent=Physo130367;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 166451 166626 . - 0 ID=Physo130367;Parent=Physo130367;rank=1 scaffold_11 . exon 166451 166626 . - . ID=Physo130367.1;Parent=Physo130367;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . biological_region 170840 170840 0.999 + . logic_name=eponine scaffold_11 . biological_region 171127 171129 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 170519 172224 . + . ID=Physo130369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110038;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 170519 172224 . + . ID=Physo130369;Parent=Physo130369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 170519 171870 . + 0 ID=Physo130369;Parent=Physo130369;rank=1 scaffold_11 . exon 170519 171870 . + . ID=Physo130369.1;Parent=Physo130369;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 171951 172224 . + 0 ID=Physo130369;Parent=Physo130369;rank=2 scaffold_11 . exon 171951 172224 . + . ID=Physo130369.2;Parent=Physo130369;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 ensembl protein_coding_gene 172601 176665 . - . ID=Physo156116;biotype=protein_coding;external_name=C_scaffold_11000011;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 172601 176665 . - . ID=Physo156116;Parent=Physo156116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 172601 172687 . - 0 ID=Physo156116;Parent=Physo156116;rank=12 scaffold_11 . exon 172601 172687 . - . ID=Physo156116.12;Parent=Physo156116;constitutive=1;rank=12 scaffold_11 . CDS 172769 172889 . - 0 ID=Physo156116;Parent=Physo156116;rank=11 scaffold_11 . exon 172769 172889 . - . ID=Physo156116.11;Parent=Physo156116;constitutive=1;ensembl_phase=2;rank=11 scaffold_11 . CDS 172962 173119 . - 0 ID=Physo156116;Parent=Physo156116;rank=10 scaffold_11 . exon 172962 173119 . - . ID=Physo156116.10;Parent=Physo156116;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_11 . CDS 173323 173393 . - 0 ID=Physo156116;Parent=Physo156116;rank=9 scaffold_11 . exon 173323 173393 . - . ID=Physo156116.9;Parent=Physo156116;constitutive=1;ensembl_phase=1;rank=9 scaffold_11 . CDS 173459 173802 . - 0 ID=Physo156116;Parent=Physo156116;rank=8 scaffold_11 . exon 173459 173802 . - . ID=Physo156116.8;Parent=Physo156116;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_11 . CDS 173839 173952 . - 0 ID=Physo156116;Parent=Physo156116;rank=7 scaffold_11 . exon 173839 173952 . - . ID=Physo156116.7;Parent=Physo156116;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_11 . CDS 174026 174367 . - 0 ID=Physo156116;Parent=Physo156116;rank=6 scaffold_11 . exon 174026 174367 . - . ID=Physo156116.6;Parent=Physo156116;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_11 . CDS 174757 174861 . - 0 ID=Physo156116;Parent=Physo156116;rank=5 scaffold_11 . exon 174757 174861 . - . ID=Physo156116.5;Parent=Physo156116;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_11 . CDS 174943 175398 . - 0 ID=Physo156116;Parent=Physo156116;rank=4 scaffold_11 . exon 174943 175398 . - . ID=Physo156116.4;Parent=Physo156116;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_11 . CDS 175789 176237 . - 0 ID=Physo156116;Parent=Physo156116;rank=3 scaffold_11 . exon 175789 176237 . - . ID=Physo156116.3;Parent=Physo156116;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 176444 176500 . - 0 ID=Physo156116;Parent=Physo156116;rank=2 scaffold_11 . exon 176444 176500 . - . ID=Physo156116.2;Parent=Physo156116;constitutive=1;rank=2 scaffold_11 . CDS 176585 176665 . - 0 ID=Physo156116;Parent=Physo156116;rank=1 scaffold_11 . exon 176585 176665 . - . ID=Physo156116.1;Parent=Physo156116;constitutive=1;rank=1 scaffold_11 . repeat_region 180566 180574 . ? . description=dust scaffold_11 . repeat_region 183163 183181 . ? . description=dust scaffold_11 . repeat_region 184756 184791 . ? . description=dust scaffold_11 . repeat_region 184757 184791 . ? . description=trf scaffold_11 . repeat_region 184760 184791 . ? . description=trf scaffold_11 ensembl protein_coding_gene 185732 187864 . + . ID=Physo130371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110040;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 185732 187864 . + . ID=Physo130371;Parent=Physo130371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 185732 187864 . + 0 ID=Physo130371;Parent=Physo130371;rank=1 scaffold_11 . exon 185732 187864 . + . ID=Physo130371.1;Parent=Physo130371;constitutive=1;rank=1 scaffold_11 . biological_region 190437 190438 0.999 + . logic_name=eponine scaffold_11 . biological_region 190626 190626 0.999 - . logic_name=eponine scaffold_11 . biological_region 190681 190683 0.999 + . logic_name=eponine scaffold_11 . repeat_region 194996 195301 . - . description=GypsyPi-1c_LTR scaffold_11 . biological_region 195480 195482 0.999 - . logic_name=eponine scaffold_11 . biological_region 195953 195955 0.999 + . logic_name=eponine scaffold_11 . repeat_region 196819 196896 . - . description=GypsyPi-1c_I-int scaffold_11 . biological_region 197523 197523 0.999 - . logic_name=eponine scaffold_11 . repeat_region 197749 197933 . - . description=GypsyPi-1c_I-int scaffold_11 . repeat_region 197905 199995 . - . description=GypsyPi-1c_I-int scaffold_11 ensembl protein_coding_gene 189202 190174 . - . ID=Physo130372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110041;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 189202 190174 . - . ID=Physo130372;Parent=Physo130372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 189202 189341 . - 0 ID=Physo130372;Parent=Physo130372;rank=2 scaffold_11 . exon 189202 189341 . - . ID=Physo130372.2;Parent=Physo130372;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 189367 190174 . - 0 ID=Physo130372;Parent=Physo130372;rank=1 scaffold_11 . exon 189367 190174 . - . ID=Physo130372.1;Parent=Physo130372;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 190461 192750 . + . ID=Physo156118;biotype=protein_coding;external_name=C_scaffold_11000013;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 190461 192750 . + . ID=Physo156118;Parent=Physo156118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 190461 190772 . + 0 ID=Physo156118;Parent=Physo156118;rank=1 scaffold_11 . exon 190461 190772 . + . ID=Physo156118.1;Parent=Physo156118;constitutive=1;rank=1 scaffold_11 . CDS 190800 190991 . + 0 ID=Physo156118;Parent=Physo156118;rank=2 scaffold_11 . exon 190800 190991 . + . ID=Physo156118.2;Parent=Physo156118;constitutive=1;rank=2 scaffold_11 . CDS 191071 191172 . + 0 ID=Physo156118;Parent=Physo156118;rank=3 scaffold_11 . exon 191071 191172 . + . ID=Physo156118.3;Parent=Physo156118;constitutive=1;rank=3 scaffold_11 . CDS 191388 191762 . + 0 ID=Physo156118;Parent=Physo156118;rank=4 scaffold_11 . exon 191388 191762 . + . ID=Physo156118.4;Parent=Physo156118;constitutive=1;rank=4 scaffold_11 . CDS 191840 191933 . + 0 ID=Physo156118;Parent=Physo156118;rank=5 scaffold_11 . exon 191840 191933 . + . ID=Physo156118.5;Parent=Physo156118;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 192094 192186 . + 0 ID=Physo156118;Parent=Physo156118;rank=6 scaffold_11 . exon 192094 192186 . + . ID=Physo156118.6;Parent=Physo156118;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 192260 192508 . + 0 ID=Physo156118;Parent=Physo156118;rank=7 scaffold_11 . exon 192260 192508 . + . ID=Physo156118.7;Parent=Physo156118;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_11 . CDS 192578 192750 . + 0 ID=Physo156118;Parent=Physo156118;rank=8 scaffold_11 . exon 192578 192750 . + . ID=Physo156118.8;Parent=Physo156118;constitutive=1;ensembl_phase=1;rank=8 scaffold_11 . repeat_region 201465 201513 . ? . description=trf scaffold_11 . repeat_region 201620 201661 . ? . description=trf scaffold_11 . repeat_region 201974 201998 . ? . description=dust scaffold_11 . repeat_region 201974 201998 . ? . description=trf scaffold_11 . repeat_region 203459 203484 . ? . description=trf scaffold_11 . repeat_region 207660 207871 . ? . description=dust scaffold_11 . repeat_region 208635 208684 . ? . description=dust scaffold_11 ensembl protein_coding_gene 203054 206833 . + . ID=Physo130374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110043;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 203054 206833 . + . ID=Physo130374;Parent=Physo130374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 203054 203102 . + 0 ID=Physo130374;Parent=Physo130374;rank=1 scaffold_11 . exon 203054 203102 . + . ID=Physo130374.1;Parent=Physo130374;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 203130 203525 . + 0 ID=Physo130374;Parent=Physo130374;rank=2 scaffold_11 . exon 203130 203525 . + . ID=Physo130374.2;Parent=Physo130374;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 203566 204268 . + 0 ID=Physo130374;Parent=Physo130374;rank=3 scaffold_11 . exon 203566 204268 . + . ID=Physo130374.3;Parent=Physo130374;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 204616 205257 . + 0 ID=Physo130374;Parent=Physo130374;rank=4 scaffold_11 . exon 204616 205257 . + . ID=Physo130374.4;Parent=Physo130374;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_11 . CDS 205570 206298 . + 0 ID=Physo130374;Parent=Physo130374;rank=5 scaffold_11 . exon 205570 206298 . + . ID=Physo130374.5;Parent=Physo130374;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_11 . CDS 206393 206505 . + 0 ID=Physo130374;Parent=Physo130374;rank=6 scaffold_11 . exon 206393 206505 . + . ID=Physo130374.6;Parent=Physo130374;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_11 . CDS 206544 206833 . + 0 ID=Physo130374;Parent=Physo130374;rank=7 scaffold_11 . exon 206544 206833 . + . ID=Physo130374.7;Parent=Physo130374;constitutive=1;ensembl_phase=1;rank=7 scaffold_11 . biological_region 218053 218056 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 209591 217107 . + . ID=Physo130375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110044;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 209591 217107 . + . ID=Physo130375;Parent=Physo130375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 209591 210213 . + 0 ID=Physo130375;Parent=Physo130375;rank=1 scaffold_11 . exon 209591 210213 . + . ID=Physo130375.1;Parent=Physo130375;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 210526 211254 . + 0 ID=Physo130375;Parent=Physo130375;rank=2 scaffold_11 . exon 210526 211254 . + . ID=Physo130375.2;Parent=Physo130375;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 211349 211461 . + 0 ID=Physo130375;Parent=Physo130375;rank=3 scaffold_11 . exon 211349 211461 . + . ID=Physo130375.3;Parent=Physo130375;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 211500 211684 . + 0 ID=Physo130375;Parent=Physo130375;rank=4 scaffold_11 . exon 211500 211684 . + . ID=Physo130375.4;Parent=Physo130375;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 212236 215318 . + 0 ID=Physo130375;Parent=Physo130375;rank=5 scaffold_11 . exon 212236 215318 . + . ID=Physo130375.5;Parent=Physo130375;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 215338 215905 . + 0 ID=Physo130375;Parent=Physo130375;rank=6 scaffold_11 . exon 215338 215905 . + . ID=Physo130375.6;Parent=Physo130375;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 . CDS 215942 216945 . + 0 ID=Physo130375;Parent=Physo130375;rank=7 scaffold_11 . exon 215942 216945 . + . ID=Physo130375.7;Parent=Physo130375;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_11 . CDS 217044 217107 . + 0 ID=Physo130375;Parent=Physo130375;rank=8 scaffold_11 . exon 217044 217107 . + . ID=Physo130375.8;Parent=Physo130375;constitutive=1;ensembl_phase=2;rank=8 scaffold_11 . repeat_region 219005 219046 . ? . description=trf scaffold_11 . repeat_region 219359 219383 . ? . description=trf scaffold_11 . repeat_region 219359 219383 . ? . description=dust scaffold_11 . repeat_region 223306 223314 . ? . description=dust scaffold_11 . repeat_region 227374 227402 . ? . description=trf scaffold_11 . repeat_region 227374 227409 . ? . description=trf scaffold_11 ensembl protein_coding_gene 226370 228107 . - . ID=Physo130376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110045;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 226370 228107 . - . ID=Physo130376;Parent=Physo130376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 226370 226404 . - 0 ID=Physo130376;Parent=Physo130376;rank=2 scaffold_11 . exon 226370 226404 . - . ID=Physo130376.2;Parent=Physo130376;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 226436 228107 . - 0 ID=Physo130376;Parent=Physo130376;rank=1 scaffold_11 . exon 226436 228107 . - . ID=Physo130376.1;Parent=Physo130376;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 228693 230406 . + . ID=Physo130377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110046;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 228693 230406 . + . ID=Physo130377;Parent=Physo130377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 228693 228773 . + 0 ID=Physo130377;Parent=Physo130377;rank=1 scaffold_11 . exon 228693 228773 . + . ID=Physo130377.1;Parent=Physo130377;constitutive=1;rank=1 scaffold_11 . CDS 228841 229133 . + 0 ID=Physo130377;Parent=Physo130377;rank=2 scaffold_11 . exon 228841 229133 . + . ID=Physo130377.2;Parent=Physo130377;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 230020 230101 . + 0 ID=Physo130377;Parent=Physo130377;rank=3 scaffold_11 . CDS 230182 230406 . + 0 ID=Physo130377;Parent=Physo130377;rank=4 scaffold_11 . biological_region 233332 233334 0.999 - . logic_name=eponine scaffold_11 . exon 230020 230101 . + . ID=Physo130377.3;Parent=Physo130377;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . exon 230182 230406 . + . ID=Physo130377.4;Parent=Physo130377;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 230674 231033 . + . ID=Physo130378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110047;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 230674 231033 . + . ID=Physo130378;Parent=Physo130378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 230674 231033 . + 0 ID=Physo130378;Parent=Physo130378;rank=1 scaffold_11 . exon 230674 231033 . + . ID=Physo130378.1;Parent=Physo130378;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 231953 233755 . + . ID=Physo130379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110048;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 231953 233755 . + . ID=Physo130379;Parent=Physo130379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 231953 232019 . + 0 ID=Physo130379;Parent=Physo130379;rank=1 scaffold_11 . exon 231953 232019 . + . ID=Physo130379.1;Parent=Physo130379;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 232096 232180 . + 0 ID=Physo130379;Parent=Physo130379;rank=2 scaffold_11 . exon 232096 232180 . + . ID=Physo130379.2;Parent=Physo130379;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 232238 232386 . + 0 ID=Physo130379;Parent=Physo130379;rank=3 scaffold_11 . exon 232238 232386 . + . ID=Physo130379.3;Parent=Physo130379;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 232458 232537 . + 0 ID=Physo130379;Parent=Physo130379;rank=4 scaffold_11 . exon 232458 232537 . + . ID=Physo130379.4;Parent=Physo130379;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 232612 232671 . + 0 ID=Physo130379;Parent=Physo130379;rank=5 scaffold_11 . exon 232612 232671 . + . ID=Physo130379.5;Parent=Physo130379;constitutive=1;rank=5 scaffold_11 . CDS 232745 232877 . + 0 ID=Physo130379;Parent=Physo130379;rank=6 scaffold_11 . exon 232745 232877 . + . ID=Physo130379.6;Parent=Physo130379;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_11 . CDS 232974 233415 . + 0 ID=Physo130379;Parent=Physo130379;rank=7 scaffold_11 . exon 232974 233415 . + . ID=Physo130379.7;Parent=Physo130379;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_11 . CDS 233484 233556 . + 0 ID=Physo130379;Parent=Physo130379;rank=8 scaffold_11 . exon 233484 233556 . + . ID=Physo130379.8;Parent=Physo130379;constitutive=1;ensembl_phase=2;rank=8 scaffold_11 . CDS 233705 233755 . + 0 ID=Physo130379;Parent=Physo130379;rank=9 scaffold_11 . exon 233705 233755 . + . ID=Physo130379.9;Parent=Physo130379;constitutive=1;rank=9 scaffold_11 ensembl protein_coding_gene 235557 241489 . + . ID=Physo156119;biotype=protein_coding;external_name=C_scaffold_11000014;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 235557 241489 . + . ID=Physo156119;Parent=Physo156119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 235557 235850 . + 0 ID=Physo156119;Parent=Physo156119;rank=1 scaffold_11 . exon 235557 235850 . + . ID=Physo156119.1;Parent=Physo156119;constitutive=1;rank=1 scaffold_11 . CDS 236026 236451 . + 0 ID=Physo156119;Parent=Physo156119;rank=2 scaffold_11 . exon 236026 236451 . + . ID=Physo156119.2;Parent=Physo156119;constitutive=1;rank=2 scaffold_11 . CDS 236532 236949 . + 0 ID=Physo156119;Parent=Physo156119;rank=3 scaffold_11 . exon 236532 236949 . + . ID=Physo156119.3;Parent=Physo156119;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 237027 237144 . + 0 ID=Physo156119;Parent=Physo156119;rank=4 scaffold_11 . exon 237027 237144 . + . ID=Physo156119.4;Parent=Physo156119;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_11 . CDS 237249 237430 . + 0 ID=Physo156119;Parent=Physo156119;rank=5 scaffold_11 . exon 237249 237430 . + . ID=Physo156119.5;Parent=Physo156119;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 237458 238133 . + 0 ID=Physo156119;Parent=Physo156119;rank=6 scaffold_11 . exon 237458 238133 . + . ID=Physo156119.6;Parent=Physo156119;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_11 . CDS 238212 239378 . + 0 ID=Physo156119;Parent=Physo156119;rank=7 scaffold_11 . exon 238212 239378 . + . ID=Physo156119.7;Parent=Physo156119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_11 . CDS 239400 239585 . + 0 ID=Physo156119;Parent=Physo156119;rank=8 scaffold_11 . CDS 239840 240460 . + 0 ID=Physo156119;Parent=Physo156119;rank=9 scaffold_11 . CDS 240541 240690 . + 0 ID=Physo156119;Parent=Physo156119;rank=10 scaffold_11 . CDS 240766 240868 . + 0 ID=Physo156119;Parent=Physo156119;rank=11 scaffold_11 . CDS 240951 241076 . + 0 ID=Physo156119;Parent=Physo156119;rank=12 scaffold_11 . CDS 241166 241489 . + 0 ID=Physo156119;Parent=Physo156119;rank=13 scaffold_11 . repeat_region 239375 239394 . ? . description=dust scaffold_11 . repeat_region 239375 239394 . ? . description=trf scaffold_11 . repeat_region 242393 242414 . ? . description=trf scaffold_11 . repeat_region 243735 243742 . ? . description=dust scaffold_11 . repeat_region 244771 244783 . ? . description=dust scaffold_11 ensembl protein_coding_gene 245546 247187 . + . ID=Physo130382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110051;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 245546 247187 . + . ID=Physo130382;Parent=Physo130382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 245546 246967 . + 0 ID=Physo130382;Parent=Physo130382;rank=1 scaffold_11 . exon 245546 246967 . + . ID=Physo130382.1;Parent=Physo130382;constitutive=1;rank=1 scaffold_11 . CDS 247047 247187 . + 0 ID=Physo130382;Parent=Physo130382;rank=2 scaffold_11 . exon 247047 247187 . + . ID=Physo130382.2;Parent=Physo130382;constitutive=1;rank=2 scaffold_11 . exon 239400 239585 . + . ID=Physo156119.8;Parent=Physo156119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_11 . exon 239840 240460 . + . ID=Physo156119.9;Parent=Physo156119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_11 . exon 240541 240690 . + . ID=Physo156119.10;Parent=Physo156119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_11 . exon 240766 240868 . + . ID=Physo156119.11;Parent=Physo156119;constitutive=1;ensembl_phase=2;rank=11 scaffold_11 . exon 240951 241076 . + . ID=Physo156119.12;Parent=Physo156119;constitutive=1;rank=12 scaffold_11 . exon 241166 241489 . + . ID=Physo156119.13;Parent=Physo156119;constitutive=1;rank=13 scaffold_11 ensembl protein_coding_gene 241779 242255 . - . ID=Physo156120;biotype=protein_coding;external_name=C_scaffold_11000015;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 241779 242255 . - . ID=Physo156120;Parent=Physo156120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 241779 242255 . - 0 ID=Physo156120;Parent=Physo156120;rank=1 scaffold_11 . exon 241779 242255 . - . ID=Physo156120.1;Parent=Physo156120;constitutive=1;rank=1 scaffold_11 . biological_region 251165 251167 0.999 + . logic_name=eponine scaffold_11 . biological_region 251191 251195 0.999 + . logic_name=eponine scaffold_11 . biological_region 251210 251216 0.999 + . logic_name=eponine scaffold_11 . biological_region 251253 251256 0.999 + . logic_name=eponine scaffold_11 . biological_region 251258 251262 0.999 - . logic_name=eponine scaffold_11 . biological_region 251269 251272 0.999 + . logic_name=eponine scaffold_11 . biological_region 251279 251282 0.999 - . logic_name=eponine scaffold_11 . biological_region 251284 251290 0.999 + . logic_name=eponine scaffold_11 . biological_region 251316 251318 0.999 + . logic_name=eponine scaffold_11 . biological_region 252302 252309 0.999 - . logic_name=eponine scaffold_11 . biological_region 252855 252858 0.999 + . logic_name=eponine scaffold_11 . biological_region 252970 252977 0.999 - . logic_name=eponine scaffold_11 . biological_region 253021 253024 0.999 - . logic_name=eponine scaffold_11 . repeat_region 256912 257115 . + . description=Polinton-1_PI scaffold_11 . biological_region 258082 258087 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 253120 253508 . + . ID=Physo113054;biotype=protein_coding;external_name=estExt_Genewise1.C_110230;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 253120 253508 . + . ID=Physo113054;Parent=Physo113054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 253120 253352 . + 0 ID=Physo113054;Parent=Physo113054;rank=1 scaffold_11 . exon 253120 253352 . + . ID=Physo113054.1;Parent=Physo113054;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 253427 253508 . + 0 ID=Physo113054;Parent=Physo113054;rank=2 scaffold_11 . exon 253427 253508 . + . ID=Physo113054.2;Parent=Physo113054;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 ensembl protein_coding_gene 251176 252575 . + . ID=Physo130383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110052;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 251176 252575 . + . ID=Physo130383;Parent=Physo130383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 251176 251399 . + 0 ID=Physo130383;Parent=Physo130383;rank=1 scaffold_11 . exon 251176 251399 . + . ID=Physo130383.1;Parent=Physo130383;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 251467 251606 . + 0 ID=Physo130383;Parent=Physo130383;rank=2 scaffold_11 . exon 251467 251606 . + . ID=Physo130383.2;Parent=Physo130383;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 251691 251805 . + 0 ID=Physo130383;Parent=Physo130383;rank=3 scaffold_11 . exon 251691 251805 . + . ID=Physo130383.3;Parent=Physo130383;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 251881 252379 . + 0 ID=Physo130383;Parent=Physo130383;rank=4 scaffold_11 . exon 251881 252379 . + . ID=Physo130383.4;Parent=Physo130383;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 252465 252575 . + 0 ID=Physo130383;Parent=Physo130383;rank=5 scaffold_11 . exon 252465 252575 . + . ID=Physo130383.5;Parent=Physo130383;constitutive=1;rank=5 scaffold_11 ensembl protein_coding_gene 254176 256759 . - . ID=Physo130385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110054;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 254176 256759 . - . ID=Physo130385;Parent=Physo130385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 254176 254197 . - 0 ID=Physo130385;Parent=Physo130385;rank=8 scaffold_11 . exon 254176 254197 . - . ID=Physo130385.8;Parent=Physo130385;constitutive=1;ensembl_phase=2;rank=8 scaffold_11 . CDS 254311 254456 . - 0 ID=Physo130385;Parent=Physo130385;rank=7 scaffold_11 . exon 254311 254456 . - . ID=Physo130385.7;Parent=Physo130385;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_11 . CDS 254545 254693 . - 0 ID=Physo130385;Parent=Physo130385;rank=6 scaffold_11 . exon 254545 254693 . - . ID=Physo130385.6;Parent=Physo130385;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 254780 255230 . - 0 ID=Physo130385;Parent=Physo130385;rank=5 scaffold_11 . exon 254780 255230 . - . ID=Physo130385.5;Parent=Physo130385;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 255728 255762 . - 0 ID=Physo130385;Parent=Physo130385;rank=4 scaffold_11 . exon 255728 255762 . - . ID=Physo130385.4;Parent=Physo130385;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 255844 255991 . - 0 ID=Physo130385;Parent=Physo130385;rank=3 scaffold_11 . exon 255844 255991 . - . ID=Physo130385.3;Parent=Physo130385;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 256065 256112 . - 0 ID=Physo130385;Parent=Physo130385;rank=2 scaffold_11 . exon 256065 256112 . - . ID=Physo130385.2;Parent=Physo130385;constitutive=1;rank=2 scaffold_11 . CDS 256214 256759 . - 0 ID=Physo130385;Parent=Physo130385;rank=1 scaffold_11 . exon 256214 256759 . - . ID=Physo130385.1;Parent=Physo130385;constitutive=1;rank=1 scaffold_11 . repeat_region 261392 261399 . ? . description=dust scaffold_11 . repeat_region 265523 272091 . ? . description=trf scaffold_11 ensembl protein_coding_gene 261541 262023 . - . ID=Physo108475;biotype=protein_coding;description=Rbj-like protein [Source:UniProtKB/TrEMBL%3BAcc:Q6IME7];external_name=RJL;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 261541 262023 . - . ID=Physo108475;Parent=Physo108475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 261541 262023 . - 0 ID=Physo108475;Parent=Physo108475;rank=1 scaffold_11 . exon 261541 262023 . - . ID=Physo108475.1;Parent=Physo108475;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 260095 260757 . - . ID=Physo130386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110055;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 260095 260757 . - . ID=Physo130386;Parent=Physo130386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 260095 260757 . - 0 ID=Physo130386;Parent=Physo130386;rank=1 scaffold_11 . exon 260095 260757 . - . ID=Physo130386.1;Parent=Physo130386;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 262235 268863 . - . ID=Physo130388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110057;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 262235 268863 . - . ID=Physo130388;Parent=Physo130388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 262235 268863 . - . ID=Physo130388.1;Parent=Physo130388;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_11 . CDS 262303 268863 . - 0 ID=Physo130388;Parent=Physo130388;rank=1 scaffold_11 . biological_region 274093 274098 0.999 + . logic_name=eponine scaffold_11 . biological_region 274110 274115 0.999 - . logic_name=eponine scaffold_11 . biological_region 274135 274136 0.999 + . logic_name=eponine scaffold_11 . biological_region 276091 276092 0.999 + . logic_name=eponine scaffold_11 . biological_region 276114 276116 0.999 + . logic_name=eponine scaffold_11 . biological_region 276157 276160 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 269731 274386 . - . ID=Physo130389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110058;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 269731 274386 . - . ID=Physo130389;Parent=Physo130389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 269731 274386 . - 0 ID=Physo130389;Parent=Physo130389;rank=1 scaffold_11 . exon 269731 274386 . - . ID=Physo130389.1;Parent=Physo130389;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 276572 280827 . - . ID=Physo130390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110059;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 276572 280827 . - . ID=Physo130390;Parent=Physo130390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 276572 276674 . - 0 ID=Physo130390;Parent=Physo130390;rank=8 scaffold_11 . exon 276572 276674 . - . ID=Physo130390.8;Parent=Physo130390;constitutive=1;ensembl_phase=2;rank=8 scaffold_11 . CDS 276764 276834 . - 0 ID=Physo130390;Parent=Physo130390;rank=7 scaffold_11 . exon 276764 276834 . - . ID=Physo130390.7;Parent=Physo130390;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_11 . CDS 276905 278485 . - 0 ID=Physo130390;Parent=Physo130390;rank=6 scaffold_11 . exon 276905 278485 . - . ID=Physo130390.6;Parent=Physo130390;constitutive=1;rank=6 scaffold_11 . CDS 278553 278920 . - 0 ID=Physo130390;Parent=Physo130390;rank=5 scaffold_11 . exon 278553 278920 . - . ID=Physo130390.5;Parent=Physo130390;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 . CDS 278982 279411 . - 0 ID=Physo130390;Parent=Physo130390;rank=4 scaffold_11 . CDS 279497 279600 . - 0 ID=Physo130390;Parent=Physo130390;rank=3 scaffold_11 . CDS 279678 279767 . - 0 ID=Physo130390;Parent=Physo130390;rank=2 scaffold_11 . CDS 279846 280761 . - 0 ID=Physo130390;Parent=Physo130390;rank=1 scaffold_11 . repeat_region 279855 279918 . ? . description=dust scaffold_11 . repeat_region 279862 279917 . ? . description=trf scaffold_11 . repeat_region 279903 279946 . ? . description=trf scaffold_11 . repeat_region 280680 280699 . ? . description=dust scaffold_11 . exon 278982 279411 . - . ID=Physo130390.4;Parent=Physo130390;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_11 . exon 279497 279600 . - . ID=Physo130390.3;Parent=Physo130390;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . exon 279678 279767 . - . ID=Physo130390.2;Parent=Physo130390;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . exon 279846 280827 . - . ID=Physo130390.1;Parent=Physo130390;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_11 ensembl protein_coding_gene 280976 281356 . + . ID=Physo130391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110060;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 280976 281356 . + . ID=Physo130391;Parent=Physo130391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 280976 281356 . + 0 ID=Physo130391;Parent=Physo130391;rank=1 scaffold_11 . exon 280976 281356 . + . ID=Physo130391.1;Parent=Physo130391;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 285920 294912 . - . ID=Physo130393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110062;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 285920 294912 . - . ID=Physo130393;Parent=Physo130393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 285920 286942 . - 0 ID=Physo130393;Parent=Physo130393;rank=2 scaffold_11 . exon 285920 286942 . - . ID=Physo130393.2;Parent=Physo130393;constitutive=1;rank=2 scaffold_11 . CDS 287035 294912 . - 0 ID=Physo130393;Parent=Physo130393;rank=1 scaffold_11 . exon 287035 294912 . - . ID=Physo130393.1;Parent=Physo130393;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 283066 285795 . + . ID=Physo156122;biotype=protein_coding;external_name=C_scaffold_11000017;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 283066 285795 . + . ID=Physo156122;Parent=Physo156122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 283066 284317 . + 0 ID=Physo156122;Parent=Physo156122;rank=1 scaffold_11 . exon 283066 284317 . + . ID=Physo156122.1;Parent=Physo156122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 284372 285795 . + 0 ID=Physo156122;Parent=Physo156122;rank=2 scaffold_11 . exon 284372 285795 . + . ID=Physo156122.2;Parent=Physo156122;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . biological_region 289026 289027 0.999 + . logic_name=eponine scaffold_11 . biological_region 294697 294698 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 296060 297338 . + . ID=Physo130394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110063;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 296060 297338 . + . ID=Physo130394;Parent=Physo130394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 296060 296185 . + 0 ID=Physo130394;Parent=Physo130394;rank=1 scaffold_11 . exon 296060 296185 . + . ID=Physo130394.1;Parent=Physo130394;constitutive=1;rank=1 scaffold_11 . CDS 296305 296856 . + 0 ID=Physo130394;Parent=Physo130394;rank=2 scaffold_11 . exon 296305 296856 . + . ID=Physo130394.2;Parent=Physo130394;constitutive=1;rank=2 scaffold_11 . CDS 296921 297139 . + 0 ID=Physo130394;Parent=Physo130394;rank=3 scaffold_11 . exon 296921 297139 . + . ID=Physo130394.3;Parent=Physo130394;constitutive=1;rank=3 scaffold_11 . CDS 297207 297299 . + 0 ID=Physo130394;Parent=Physo130394;rank=4 scaffold_11 . exon 297207 297338 . + . ID=Physo130394.4;Parent=Physo130394;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_11 ensembl protein_coding_gene 297376 299985 . - . ID=Physo130395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110064;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 297376 299985 . - . ID=Physo130395;Parent=Physo130395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 297376 299985 . - 0 ID=Physo130395;Parent=Physo130395;rank=1 scaffold_11 . exon 297376 299985 . - . ID=Physo130395.1;Parent=Physo130395;constitutive=1;rank=1 scaffold_11 . repeat_region 307540 307657 . ? . description=trf scaffold_11 . repeat_region 307540 307657 . ? . description=trf scaffold_11 . repeat_region 307547 307657 . ? . description=trf scaffold_11 ensembl snRNA_gene 306250 306367 . + . ID=EPrPSOG00000000160;biotype=snRNA;description=U5 spliceosomal RNA [Source:RFAM%3BAcc:RF00020];external_name=U5;logic_name=ncrna_eg scaffold_11 ensembl snRNA 306250 306367 . + . ID=EPrPSOT00000000160;Parent=EPrPSOG00000000160;biotype=snRNA;logic_name=ncrna_eg scaffold_11 . exon 306250 306367 . + . ID=EPrPSOE00000000160;Parent=EPrPSOT00000000160;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 300196 302109 . - . ID=Physo130396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110065;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 300196 302109 . - . ID=Physo130396;Parent=Physo130396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 300196 300960 . - 0 ID=Physo130396;Parent=Physo130396;rank=3 scaffold_11 . exon 300196 300960 . - . ID=Physo130396.3;Parent=Physo130396;constitutive=1;rank=3 scaffold_11 . CDS 301230 301559 . - 0 ID=Physo130396;Parent=Physo130396;rank=2 scaffold_11 . exon 301230 301559 . - . ID=Physo130396.2;Parent=Physo130396;constitutive=1;rank=2 scaffold_11 . CDS 301636 302109 . - 0 ID=Physo130396;Parent=Physo130396;rank=1 scaffold_11 . exon 301636 302109 . - . ID=Physo130396.1;Parent=Physo130396;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 302678 306149 . + . ID=Physo156125;biotype=protein_coding;external_name=C_scaffold_11000020;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 302678 306149 . + . ID=Physo156125;Parent=Physo156125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 302678 302701 . + 0 ID=Physo156125;Parent=Physo156125;rank=1 scaffold_11 . exon 302678 302701 . + . ID=Physo156125.1;Parent=Physo156125;constitutive=1;rank=1 scaffold_11 . CDS 302794 303165 . + 0 ID=Physo156125;Parent=Physo156125;rank=2 scaffold_11 . exon 302794 303165 . + . ID=Physo156125.2;Parent=Physo156125;constitutive=1;rank=2 scaffold_11 . CDS 303237 303577 . + 0 ID=Physo156125;Parent=Physo156125;rank=3 scaffold_11 . exon 303237 303577 . + . ID=Physo156125.3;Parent=Physo156125;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 303646 303753 . + 0 ID=Physo156125;Parent=Physo156125;rank=4 scaffold_11 . exon 303646 303753 . + . ID=Physo156125.4;Parent=Physo156125;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_11 . CDS 303834 303861 . + 0 ID=Physo156125;Parent=Physo156125;rank=5 scaffold_11 . exon 303834 303861 . + . ID=Physo156125.5;Parent=Physo156125;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 303928 304045 . + 0 ID=Physo156125;Parent=Physo156125;rank=6 scaffold_11 . exon 303928 304045 . + . ID=Physo156125.6;Parent=Physo156125;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_11 . CDS 304120 304382 . + 0 ID=Physo156125;Parent=Physo156125;rank=7 scaffold_11 . exon 304120 304382 . + . ID=Physo156125.7;Parent=Physo156125;constitutive=1;ensembl_phase=1;rank=7 scaffold_11 . CDS 304491 305968 . + 0 ID=Physo156125;Parent=Physo156125;rank=8 scaffold_11 . exon 304491 305968 . + . ID=Physo156125.8;Parent=Physo156125;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_11 . CDS 306032 306149 . + 0 ID=Physo156125;Parent=Physo156125;rank=9 scaffold_11 . exon 306032 306149 . + . ID=Physo156125.9;Parent=Physo156125;constitutive=1;ensembl_phase=2;rank=9 scaffold_11 . repeat_region 308758 308765 . ? . description=dust scaffold_11 . biological_region 310599 310603 0.999 + . logic_name=eponine scaffold_11 . repeat_region 311474 311481 . ? . description=dust scaffold_11 . biological_region 313468 313468 0.999 + . logic_name=eponine scaffold_11 . biological_region 314104 314105 0.999 + . logic_name=eponine scaffold_11 . biological_region 314119 314122 0.999 + . logic_name=eponine scaffold_11 . biological_region 315092 315093 0.999 - . logic_name=eponine scaffold_11 . biological_region 316947 316950 0.999 + . logic_name=eponine scaffold_11 . biological_region 316975 316981 0.999 + . logic_name=eponine scaffold_11 . biological_region 317924 317929 0.999 + . logic_name=eponine scaffold_11 . biological_region 318078 318080 0.999 - . logic_name=eponine scaffold_11 . biological_region 318152 318157 0.999 - . logic_name=eponine scaffold_11 . biological_region 318553 318553 0.999 + . logic_name=eponine scaffold_11 ensembl snRNA_gene 308650 308757 . + . ID=EPrPSOG00000000193;biotype=snRNA;description=U5 spliceosomal RNA [Source:RFAM%3BAcc:RF00020];external_name=U5;logic_name=ncrna_eg scaffold_11 ensembl snRNA 308650 308757 . + . ID=EPrPSOT00000000193;Parent=EPrPSOG00000000193;biotype=snRNA;logic_name=ncrna_eg scaffold_11 . exon 308650 308757 . + . ID=EPrPSOE00000000193;Parent=EPrPSOT00000000193;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 308851 311212 . - . ID=Physo130399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110068;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 308851 311212 . - . ID=Physo130399;Parent=Physo130399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 308851 309465 . - 0 ID=Physo130399;Parent=Physo130399;rank=6 scaffold_11 . exon 308851 309465 . - . ID=Physo130399.6;Parent=Physo130399;constitutive=1;rank=6 scaffold_11 . CDS 309528 309591 . - 0 ID=Physo130399;Parent=Physo130399;rank=5 scaffold_11 . exon 309528 309591 . - . ID=Physo130399.5;Parent=Physo130399;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 309664 310296 . - 0 ID=Physo130399;Parent=Physo130399;rank=4 scaffold_11 . exon 309664 310296 . - . ID=Physo130399.4;Parent=Physo130399;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_11 . CDS 310363 310448 . - 0 ID=Physo130399;Parent=Physo130399;rank=3 scaffold_11 . exon 310363 310448 . - . ID=Physo130399.3;Parent=Physo130399;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 310541 310692 . - 0 ID=Physo130399;Parent=Physo130399;rank=2 scaffold_11 . exon 310541 310692 . - . ID=Physo130399.2;Parent=Physo130399;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 310771 311212 . - 0 ID=Physo130399;Parent=Physo130399;rank=1 scaffold_11 . exon 310771 311212 . - . ID=Physo130399.1;Parent=Physo130399;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 311297 312545 . - . ID=Physo130400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110069;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 311297 312545 . - . ID=Physo130400;Parent=Physo130400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 311297 311464 . - . ID=Physo130400.5;Parent=Physo130400;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_11 . CDS 311333 311464 . - 0 ID=Physo130400;Parent=Physo130400;rank=5 scaffold_11 . CDS 311542 311680 . - 0 ID=Physo130400;Parent=Physo130400;rank=4 scaffold_11 . exon 311542 311680 . - . ID=Physo130400.4;Parent=Physo130400;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 311760 311884 . - 0 ID=Physo130400;Parent=Physo130400;rank=3 scaffold_11 . exon 311760 311884 . - . ID=Physo130400.3;Parent=Physo130400;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 311956 312205 . - 0 ID=Physo130400;Parent=Physo130400;rank=2 scaffold_11 . exon 311956 312205 . - . ID=Physo130400.2;Parent=Physo130400;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 312286 312545 . - 0 ID=Physo130400;Parent=Physo130400;rank=1 scaffold_11 . exon 312286 312545 . - . ID=Physo130400.1;Parent=Physo130400;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 314269 315378 . + . ID=Physo130401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110070;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 314269 315378 . + . ID=Physo130401;Parent=Physo130401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 314269 315378 . + 0 ID=Physo130401;Parent=Physo130401;rank=1 scaffold_11 . exon 314269 315378 . + . ID=Physo130401.1;Parent=Physo130401;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 315891 317047 . - . ID=Physo130402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110071;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 315891 317047 . - . ID=Physo130402;Parent=Physo130402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 315891 316084 . - 0 ID=Physo130402;Parent=Physo130402;rank=4 scaffold_11 . exon 315891 316084 . - . ID=Physo130402.4;Parent=Physo130402;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 316155 316437 . - 0 ID=Physo130402;Parent=Physo130402;rank=3 scaffold_11 . exon 316155 316437 . - . ID=Physo130402.3;Parent=Physo130402;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 316517 316753 . - 0 ID=Physo130402;Parent=Physo130402;rank=2 scaffold_11 . exon 316517 316753 . - . ID=Physo130402.2;Parent=Physo130402;constitutive=1;rank=2 scaffold_11 . CDS 316847 317026 . - 0 ID=Physo130402;Parent=Physo130402;rank=1 scaffold_11 . exon 316847 317047 . - . ID=Physo130402.1;Parent=Physo130402;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 ensembl protein_coding_gene 317960 320920 . + . ID=Physo130403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110072;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 317960 320920 . + . ID=Physo130403;Parent=Physo130403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 317960 320920 . + 0 ID=Physo130403;Parent=Physo130403;rank=1 scaffold_11 . exon 317960 320920 . + . ID=Physo130403.1;Parent=Physo130403;constitutive=1;rank=1 scaffold_11 . repeat_region 318745 318772 . ? . description=trf scaffold_11 . repeat_region 326981 327033 . ? . description=trf scaffold_11 ensembl protein_coding_gene 321134 324324 . - . ID=Physo156127;biotype=protein_coding;external_name=C_scaffold_11000022;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 321134 324324 . - . ID=Physo156127;Parent=Physo156127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 321134 321138 . - 0 ID=Physo156127;Parent=Physo156127;rank=9 scaffold_11 . exon 321134 321138 . - . ID=Physo156127.9;Parent=Physo156127;constitutive=1;ensembl_phase=1;rank=9 scaffold_11 . CDS 321214 321279 . - 0 ID=Physo156127;Parent=Physo156127;rank=8 scaffold_11 . exon 321214 321279 . - . ID=Physo156127.8;Parent=Physo156127;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_11 . CDS 321428 321728 . - 0 ID=Physo156127;Parent=Physo156127;rank=7 scaffold_11 . exon 321428 321728 . - . ID=Physo156127.7;Parent=Physo156127;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_11 . CDS 322038 322685 . - 0 ID=Physo156127;Parent=Physo156127;rank=6 scaffold_11 . exon 322038 322685 . - . ID=Physo156127.6;Parent=Physo156127;constitutive=1;rank=6 scaffold_11 . CDS 322790 323125 . - 0 ID=Physo156127;Parent=Physo156127;rank=5 scaffold_11 . exon 322790 323125 . - . ID=Physo156127.5;Parent=Physo156127;constitutive=1;rank=5 scaffold_11 . CDS 323192 323553 . - 0 ID=Physo156127;Parent=Physo156127;rank=4 scaffold_11 . exon 323192 323553 . - . ID=Physo156127.4;Parent=Physo156127;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 323628 323712 . - 0 ID=Physo156127;Parent=Physo156127;rank=3 scaffold_11 . exon 323628 323712 . - . ID=Physo156127.3;Parent=Physo156127;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 323779 323953 . - 0 ID=Physo156127;Parent=Physo156127;rank=2 scaffold_11 . exon 323779 323953 . - . ID=Physo156127.2;Parent=Physo156127;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 324077 324324 . - 0 ID=Physo156127;Parent=Physo156127;rank=1 scaffold_11 . exon 324077 324324 . - . ID=Physo156127.1;Parent=Physo156127;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 324596 326284 . - . ID=Physo156128;biotype=protein_coding;external_name=C_scaffold_11000023;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 324596 326284 . - . ID=Physo156128;Parent=Physo156128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 324596 325849 . - 0 ID=Physo156128;Parent=Physo156128;rank=2 scaffold_11 . exon 324596 325849 . - . ID=Physo156128.2;Parent=Physo156128;constitutive=1;rank=2 scaffold_11 . CDS 325880 326284 . - 0 ID=Physo156128;Parent=Physo156128;rank=1 scaffold_11 . exon 325880 326284 . - . ID=Physo156128.1;Parent=Physo156128;constitutive=1;rank=1 scaffold_11 . biological_region 330252 330255 0.999 + . logic_name=eponine scaffold_11 . repeat_region 331241 331249 . ? . description=dust scaffold_11 . biological_region 331269 331276 0.999 + . logic_name=eponine scaffold_11 . repeat_region 333033 333040 . ? . description=dust scaffold_11 . repeat_region 336178 336187 . ? . description=dust scaffold_11 . repeat_region 338290 338297 . ? . description=dust scaffold_11 . repeat_region 344401 344421 . ? . description=trf scaffold_11 . repeat_region 346849 346899 . ? . description=trf scaffold_11 ensembl protein_coding_gene 340050 341009 . - . ID=Physo130406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110075;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 340050 341009 . - . ID=Physo130406;Parent=Physo130406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 340050 341009 . - 0 ID=Physo130406;Parent=Physo130406;rank=1 scaffold_11 . exon 340050 341009 . - . ID=Physo130406.1;Parent=Physo130406;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 342531 344129 . + . ID=Physo130407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110076;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 342531 344129 . + . ID=Physo130407;Parent=Physo130407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 342531 344129 . + 0 ID=Physo130407;Parent=Physo130407;rank=1 scaffold_11 . exon 342531 344129 . + . ID=Physo130407.1;Parent=Physo130407;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 345720 346685 . + . ID=Physo130408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110077;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 345720 346685 . + . ID=Physo130408;Parent=Physo130408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 345720 345847 . + 0 ID=Physo130408;Parent=Physo130408;rank=1 scaffold_11 . exon 345720 345847 . + . ID=Physo130408.1;Parent=Physo130408;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 346082 346685 . + 0 ID=Physo130408;Parent=Physo130408;rank=2 scaffold_11 . exon 346082 346685 . + . ID=Physo130408.2;Parent=Physo130408;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 ensembl protein_coding_gene 347090 347905 . - . ID=Physo130409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110078;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 347090 347905 . - . ID=Physo130409;Parent=Physo130409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 347090 347857 . - 0 ID=Physo130409;Parent=Physo130409;rank=1 scaffold_11 . exon 347090 347905 . - . ID=Physo130409.1;Parent=Physo130409;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 . biological_region 349876 349881 0.999 + . logic_name=eponine scaffold_11 . biological_region 350712 350716 0.999 + . logic_name=eponine scaffold_11 . biological_region 351871 351874 0.999 + . logic_name=eponine scaffold_11 . biological_region 351921 351923 0.999 + . logic_name=eponine scaffold_11 . biological_region 351932 351934 0.999 - . logic_name=eponine scaffold_11 . biological_region 352004 352007 0.999 - . logic_name=eponine scaffold_11 . biological_region 352635 352637 0.999 - . logic_name=eponine scaffold_11 . biological_region 356351 356354 0.999 + . logic_name=eponine scaffold_11 . repeat_region 357324 357344 . ? . description=dust scaffold_11 . biological_region 357764 357768 0.999 + . logic_name=eponine scaffold_11 . biological_region 357836 357842 0.999 + . logic_name=eponine scaffold_11 . biological_region 357869 357875 0.999 + . logic_name=eponine scaffold_11 . biological_region 357906 357913 0.999 + . logic_name=eponine scaffold_11 . biological_region 357944 357951 0.999 - . logic_name=eponine scaffold_11 . biological_region 357983 357994 0.999 - . logic_name=eponine scaffold_11 . biological_region 357999 358002 0.999 + . logic_name=eponine scaffold_11 . biological_region 358093 358098 0.999 - . logic_name=eponine scaffold_11 . biological_region 358148 358154 0.999 + . logic_name=eponine scaffold_11 . biological_region 358221 358226 0.999 - . logic_name=eponine scaffold_11 . biological_region 358232 358239 0.999 + . logic_name=eponine scaffold_11 . biological_region 358277 358280 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 349638 351289 . + . ID=Physo130410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110079;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 349638 351289 . + . ID=Physo130410;Parent=Physo130410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 349638 351289 . + . ID=Physo130410.1;Parent=Physo130410;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 349676 351289 . + 0 ID=Physo130410;Parent=Physo130410;rank=1 scaffold_11 ensembl protein_coding_gene 351760 354345 . + . ID=Physo130411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110080;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 351760 354345 . + . ID=Physo130411;Parent=Physo130411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 351760 354345 . + 0 ID=Physo130411;Parent=Physo130411;rank=1 scaffold_11 . exon 351760 354345 . + . ID=Physo130411.1;Parent=Physo130411;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 354629 357378 . - . ID=Physo156130;biotype=protein_coding;external_name=C_scaffold_11000025;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 354629 357378 . - . ID=Physo156130;Parent=Physo156130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 354629 355327 . - 0 ID=Physo156130;Parent=Physo156130;rank=6 scaffold_11 . exon 354629 355327 . - . ID=Physo156130.6;Parent=Physo156130;constitutive=1;rank=6 scaffold_11 . CDS 355389 355601 . - 0 ID=Physo156130;Parent=Physo156130;rank=5 scaffold_11 . exon 355389 355601 . - . ID=Physo156130.5;Parent=Physo156130;constitutive=1;rank=5 scaffold_11 . CDS 355950 356137 . - 0 ID=Physo156130;Parent=Physo156130;rank=4 scaffold_11 . exon 355950 356137 . - . ID=Physo156130.4;Parent=Physo156130;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 356220 357036 . - 0 ID=Physo156130;Parent=Physo156130;rank=3 scaffold_11 . exon 356220 357036 . - . ID=Physo156130.3;Parent=Physo156130;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 357120 357253 . - 0 ID=Physo156130;Parent=Physo156130;rank=2 scaffold_11 . exon 357120 357253 . - . ID=Physo156130.2;Parent=Physo156130;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 357351 357378 . - 0 ID=Physo156130;Parent=Physo156130;rank=1 scaffold_11 . exon 357351 357378 . - . ID=Physo156130.1;Parent=Physo156130;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 357750 358678 . + . ID=Physo156131;biotype=protein_coding;external_name=C_scaffold_11000026;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 357750 358678 . + . ID=Physo156131;Parent=Physo156131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 357750 358341 . + 0 ID=Physo156131;Parent=Physo156131;rank=1 scaffold_11 . exon 357750 358341 . + . ID=Physo156131.1;Parent=Physo156131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 358434 358678 . + 0 ID=Physo156131;Parent=Physo156131;rank=2 scaffold_11 . repeat_region 359141 359179 . ? . description=trf scaffold_11 ensembl protein_coding_gene 367162 369340 . - . ID=Physo130415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110084;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 367162 369340 . - . ID=Physo130415;Parent=Physo130415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 367162 367195 . - 0 ID=Physo130415;Parent=Physo130415;rank=2 scaffold_11 . exon 367162 367195 . - . ID=Physo130415.2;Parent=Physo130415;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 367260 369340 . - 0 ID=Physo130415;Parent=Physo130415;rank=1 scaffold_11 . exon 367260 369340 . - . ID=Physo130415.1;Parent=Physo130415;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . exon 358434 358678 . + . ID=Physo156131.2;Parent=Physo156131;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 ensembl protein_coding_gene 359004 364064 . + . ID=Physo156133;biotype=protein_coding;external_name=C_scaffold_11000028;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 359004 364064 . + . ID=Physo156133;Parent=Physo156133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 359004 359369 . + 0 ID=Physo156133;Parent=Physo156133;rank=1 scaffold_11 . exon 359004 359369 . + . ID=Physo156133.1;Parent=Physo156133;constitutive=1;rank=1 scaffold_11 . CDS 359490 359752 . + 0 ID=Physo156133;Parent=Physo156133;rank=2 scaffold_11 . exon 359490 359752 . + . ID=Physo156133.2;Parent=Physo156133;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 359828 359952 . + 0 ID=Physo156133;Parent=Physo156133;rank=3 scaffold_11 . exon 359828 359952 . + . ID=Physo156133.3;Parent=Physo156133;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 360040 360278 . + 0 ID=Physo156133;Parent=Physo156133;rank=4 scaffold_11 . exon 360040 360278 . + . ID=Physo156133.4;Parent=Physo156133;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 360348 360579 . + 0 ID=Physo156133;Parent=Physo156133;rank=5 scaffold_11 . exon 360348 360579 . + . ID=Physo156133.5;Parent=Physo156133;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 360637 360933 . + 0 ID=Physo156133;Parent=Physo156133;rank=6 scaffold_11 . exon 360637 360933 . + . ID=Physo156133.6;Parent=Physo156133;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 361003 362186 . + 0 ID=Physo156133;Parent=Physo156133;rank=7 scaffold_11 . exon 361003 362186 . + . ID=Physo156133.7;Parent=Physo156133;constitutive=1;ensembl_phase=1;rank=7 scaffold_11 . CDS 362400 362921 . + 0 ID=Physo156133;Parent=Physo156133;rank=8 scaffold_11 . exon 362400 362921 . + . ID=Physo156133.8;Parent=Physo156133;constitutive=1;rank=8 scaffold_11 . CDS 362987 363167 . + 0 ID=Physo156133;Parent=Physo156133;rank=9 scaffold_11 . exon 362987 363167 . + . ID=Physo156133.9;Parent=Physo156133;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_11 . CDS 363282 363387 . + 0 ID=Physo156133;Parent=Physo156133;rank=10 scaffold_11 . exon 363282 363387 . + . ID=Physo156133.10;Parent=Physo156133;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_11 . CDS 363463 363629 . + 0 ID=Physo156133;Parent=Physo156133;rank=11 scaffold_11 . exon 363463 363629 . + . ID=Physo156133.11;Parent=Physo156133;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_11 . CDS 363781 363842 . + 0 ID=Physo156133;Parent=Physo156133;rank=12 scaffold_11 . exon 363781 363842 . + . ID=Physo156133.12;Parent=Physo156133;constitutive=1;ensembl_phase=1;rank=12 scaffold_11 . CDS 363863 364064 . + 0 ID=Physo156133;Parent=Physo156133;rank=13 scaffold_11 . exon 363863 364064 . + . ID=Physo156133.13;Parent=Physo156133;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_11 . biological_region 368879 368881 0.999 + . logic_name=eponine scaffold_11 . biological_region 369140 369143 0.999 + . logic_name=eponine scaffold_11 . biological_region 369185 369188 0.999 + . logic_name=eponine scaffold_11 . biological_region 369224 369224 0.999 + . logic_name=eponine scaffold_11 . biological_region 372855 372860 0.999 + . logic_name=eponine scaffold_11 . biological_region 372932 372936 0.999 + . logic_name=eponine scaffold_11 . biological_region 373122 373126 0.999 - . logic_name=eponine scaffold_11 . biological_region 373176 373182 0.999 + . logic_name=eponine scaffold_11 . biological_region 373231 373233 0.999 + . logic_name=eponine scaffold_11 . repeat_region 373433 375913 . ? . description=dust scaffold_11 . biological_region 377847 377849 0.999 + . logic_name=eponine scaffold_11 . biological_region 377925 377927 0.999 + . logic_name=eponine scaffold_11 . biological_region 378141 378142 0.999 + . logic_name=eponine scaffold_11 . biological_region 378169 378175 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 369845 370521 . + . ID=Physo112846;biotype=protein_coding;external_name=estExt_Genewise1.C_110022;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 369845 370521 . + . ID=Physo112846;Parent=Physo112846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 369845 369930 . + . ID=Physo112846.1;Parent=Physo112846;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . exon 369999 370152 . + . ID=Physo112846.2;Parent=Physo112846;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_11 . exon 370220 370268 . + . ID=Physo112846.3;Parent=Physo112846;constitutive=1;ensembl_phase=-1;rank=3 scaffold_11 . CDS 370239 370268 . + 0 ID=Physo112846;Parent=Physo112846;rank=1 scaffold_11 . CDS 370334 370462 . + 0 ID=Physo112846;Parent=Physo112846;rank=2 scaffold_11 . exon 370334 370521 . + . ID=Physo112846.4;Parent=Physo112846;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_11 ensembl protein_coding_gene 372902 373383 . - . ID=Physo130416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110085;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 372902 373383 . - . ID=Physo130416;Parent=Physo130416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 372902 373134 . - 0 ID=Physo130416;Parent=Physo130416;rank=2 scaffold_11 . exon 372902 373134 . - . ID=Physo130416.2;Parent=Physo130416;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 373155 373383 . - 0 ID=Physo130416;Parent=Physo130416;rank=1 scaffold_11 . exon 373155 373383 . - . ID=Physo130416.1;Parent=Physo130416;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 376355 380414 . + . ID=Physo130417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110086;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 376355 380414 . + . ID=Physo130417;Parent=Physo130417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 376355 376445 . + 0 ID=Physo130417;Parent=Physo130417;rank=1 scaffold_11 . exon 376355 376445 . + . ID=Physo130417.1;Parent=Physo130417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 376707 377337 . + 0 ID=Physo130417;Parent=Physo130417;rank=2 scaffold_11 . exon 376707 377337 . + . ID=Physo130417.2;Parent=Physo130417;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 377364 378209 . + 0 ID=Physo130417;Parent=Physo130417;rank=3 scaffold_11 . exon 377364 378209 . + . ID=Physo130417.3;Parent=Physo130417;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . CDS 378269 378438 . + 0 ID=Physo130417;Parent=Physo130417;rank=4 scaffold_11 . exon 378269 378438 . + . ID=Physo130417.4;Parent=Physo130417;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 378474 378781 . + 0 ID=Physo130417;Parent=Physo130417;rank=5 scaffold_11 . CDS 378935 380074 . + 0 ID=Physo130417;Parent=Physo130417;rank=6 scaffold_11 . CDS 380166 380414 . + 0 ID=Physo130417;Parent=Physo130417;rank=7 scaffold_11 . repeat_region 377701 378771 . ? . description=trf scaffold_11 . repeat_region 378536 379212 . ? . description=trf scaffold_11 . repeat_region 379366 379485 . ? . description=trf scaffold_11 . repeat_region 387475 387494 . ? . description=trf scaffold_11 . exon 378474 378781 . + . ID=Physo130417.5;Parent=Physo130417;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 . exon 378935 380074 . + . ID=Physo130417.6;Parent=Physo130417;constitutive=1;rank=6 scaffold_11 . exon 380166 380414 . + . ID=Physo130417.7;Parent=Physo130417;constitutive=1;rank=7 scaffold_11 ensembl protein_coding_gene 380673 381884 . + . ID=Physo130418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110087;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 380673 381884 . + . ID=Physo130418;Parent=Physo130418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 380673 381884 . + 0 ID=Physo130418;Parent=Physo130418;rank=1 scaffold_11 . exon 380673 381884 . + . ID=Physo130418.1;Parent=Physo130418;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 382494 383045 . - . ID=Physo130419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110088;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 382494 383045 . - . ID=Physo130419;Parent=Physo130419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 382494 383045 . - 0 ID=Physo130419;Parent=Physo130419;rank=1 scaffold_11 . exon 382494 383045 . - . ID=Physo130419.1;Parent=Physo130419;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 383266 384228 . - . ID=Physo130420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110089;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 383266 384228 . - . ID=Physo130420;Parent=Physo130420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 383266 384228 . - 0 ID=Physo130420;Parent=Physo130420;rank=1 scaffold_11 . exon 383266 384228 . - . ID=Physo130420.1;Parent=Physo130420;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 384747 386036 . + . ID=Physo130421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110090;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 384747 386036 . + . ID=Physo130421;Parent=Physo130421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 384747 384827 . + 0 ID=Physo130421;Parent=Physo130421;rank=1 scaffold_11 . exon 384747 384827 . + . ID=Physo130421.1;Parent=Physo130421;constitutive=1;rank=1 scaffold_11 . CDS 384909 385003 . + 0 ID=Physo130421;Parent=Physo130421;rank=2 scaffold_11 . exon 384909 385003 . + . ID=Physo130421.2;Parent=Physo130421;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 385081 385296 . + 0 ID=Physo130421;Parent=Physo130421;rank=3 scaffold_11 . exon 385081 385296 . + . ID=Physo130421.3;Parent=Physo130421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . CDS 385391 385499 . + 0 ID=Physo130421;Parent=Physo130421;rank=4 scaffold_11 . exon 385391 385499 . + . ID=Physo130421.4;Parent=Physo130421;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 385596 385694 . + 0 ID=Physo130421;Parent=Physo130421;rank=5 scaffold_11 . exon 385596 385694 . + . ID=Physo130421.5;Parent=Physo130421;constitutive=1;rank=5 scaffold_11 . CDS 385778 385846 . + 0 ID=Physo130421;Parent=Physo130421;rank=6 scaffold_11 . exon 385778 385846 . + . ID=Physo130421.6;Parent=Physo130421;constitutive=1;rank=6 scaffold_11 . CDS 385917 386036 . + 0 ID=Physo130421;Parent=Physo130421;rank=7 scaffold_11 . exon 385917 386036 . + . ID=Physo130421.7;Parent=Physo130421;constitutive=1;rank=7 scaffold_11 ensembl protein_coding_gene 386563 387636 . - . ID=Physo130422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110091;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 386563 387636 . - . ID=Physo130422;Parent=Physo130422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 386563 387636 . - 0 ID=Physo130422;Parent=Physo130422;rank=1 scaffold_11 . exon 386563 387636 . - . ID=Physo130422.1;Parent=Physo130422;constitutive=1;rank=1 scaffold_11 . biological_region 388304 388307 0.999 - . logic_name=eponine scaffold_11 . biological_region 389099 389101 0.999 + . logic_name=eponine scaffold_11 . biological_region 389403 389404 0.999 + . logic_name=eponine scaffold_11 . repeat_region 393015 393076 . ? . description=dust scaffold_11 . biological_region 395522 395524 0.999 + . logic_name=eponine scaffold_11 . biological_region 395553 395556 0.999 + . logic_name=eponine scaffold_11 . biological_region 395596 395597 0.999 - . logic_name=eponine scaffold_11 . biological_region 396681 396683 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 389007 392666 . + . ID=Physo108476;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110007;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 389007 392666 . + . ID=Physo108476;Parent=Physo108476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 389007 392666 . + 0 ID=Physo108476;Parent=Physo108476;rank=1 scaffold_11 . exon 389007 392666 . + . ID=Physo108476.1;Parent=Physo108476;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 392858 398914 . + . ID=Physo130424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110093;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 392858 398914 . + . ID=Physo130424;Parent=Physo130424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 392858 392863 . + 0 ID=Physo130424;Parent=Physo130424;rank=1 scaffold_11 . exon 392858 392863 . + . ID=Physo130424.1;Parent=Physo130424;constitutive=1;rank=1 scaffold_11 . CDS 392910 393535 . + 0 ID=Physo130424;Parent=Physo130424;rank=2 scaffold_11 . exon 392910 393535 . + . ID=Physo130424.2;Parent=Physo130424;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 393590 395192 . + 0 ID=Physo130424;Parent=Physo130424;rank=3 scaffold_11 . exon 393590 395192 . + . ID=Physo130424.3;Parent=Physo130424;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 395284 395382 . + 0 ID=Physo130424;Parent=Physo130424;rank=4 scaffold_11 . exon 395284 395382 . + . ID=Physo130424.4;Parent=Physo130424;constitutive=1;rank=4 scaffold_11 . CDS 395444 395700 . + 0 ID=Physo130424;Parent=Physo130424;rank=5 scaffold_11 . exon 395444 395700 . + . ID=Physo130424.5;Parent=Physo130424;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 395830 398914 . + 0 ID=Physo130424;Parent=Physo130424;rank=6 scaffold_11 . exon 395830 398914 . + . ID=Physo130424.6;Parent=Physo130424;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 . repeat_region 402765 402789 . ? . description=trf scaffold_11 . repeat_region 404606 404660 . ? . description=trf scaffold_11 . repeat_region 406385 406427 . ? . description=trf scaffold_11 ensembl protein_coding_gene 406065 406859 . + . ID=Physo108478;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110009;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 406065 406859 . + . ID=Physo108478;Parent=Physo108478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 406065 406859 . + . ID=Physo108478.1;Parent=Physo108478;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 406067 406678 . + 0 ID=Physo108478;Parent=Physo108478;rank=1 scaffold_11 ensembl protein_coding_gene 407533 408234 . + . ID=Physo112866;biotype=protein_coding;external_name=estExt_Genewise1.C_110042;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 407533 408234 . + . ID=Physo112866;Parent=Physo112866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 407533 408234 . + . ID=Physo112866.1;Parent=Physo112866;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 407534 408169 . + 0 ID=Physo112866;Parent=Physo112866;rank=1 scaffold_11 ensembl protein_coding_gene 399325 399927 . + . ID=Physo156135;biotype=protein_coding;external_name=C_scaffold_11000030;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 399325 399927 . + . ID=Physo156135;Parent=Physo156135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 399325 399927 . + 0 ID=Physo156135;Parent=Physo156135;rank=1 scaffold_11 . exon 399325 399927 . + . ID=Physo156135.1;Parent=Physo156135;constitutive=1;rank=1 scaffold_11 . repeat_region 408341 408349 . ? . description=dust scaffold_11 . repeat_region 409191 409198 . ? . description=dust scaffold_11 . biological_region 411133 411134 0.999 + . logic_name=eponine scaffold_11 . repeat_region 412448 412457 . ? . description=dust scaffold_11 . repeat_region 415304 415315 . ? . description=dust scaffold_11 ensembl protein_coding_gene 410846 411438 . - . ID=Physo108480;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110011;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 410846 411438 . - . ID=Physo108480;Parent=Physo108480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 410846 411340 . - . ID=Physo108480.2;Parent=Physo108480;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_11 . CDS 410848 411340 . - 0 ID=Physo108480;Parent=Physo108480;rank=2 scaffold_11 . CDS 411377 411438 . - 0 ID=Physo108480;Parent=Physo108480;rank=1 scaffold_11 . exon 411377 411438 . - . ID=Physo108480.1;Parent=Physo108480;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 409305 410109 . - . ID=Physo130428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110097;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 409305 410109 . - . ID=Physo130428;Parent=Physo130428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 409305 410109 . - . ID=Physo130428.1;Parent=Physo130428;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 409370 410107 . - 0 ID=Physo130428;Parent=Physo130428;rank=1 scaffold_11 ensembl protein_coding_gene 425605 426207 . + . ID=Physo156136;biotype=protein_coding;external_name=C_scaffold_11000031;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 425605 426207 . + . ID=Physo156136;Parent=Physo156136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 425605 426207 . + 0 ID=Physo156136;Parent=Physo156136;rank=1 scaffold_11 . exon 425605 426207 . + . ID=Physo156136.1;Parent=Physo156136;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 426371 429286 . + . ID=Physo156137;biotype=protein_coding;external_name=C_scaffold_11000032;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 426371 429286 . + . ID=Physo156137;Parent=Physo156137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 426371 427485 . + 0 ID=Physo156137;Parent=Physo156137;rank=1 scaffold_11 . exon 426371 427485 . + . ID=Physo156137.1;Parent=Physo156137;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 427636 428495 . + 0 ID=Physo156137;Parent=Physo156137;rank=2 scaffold_11 . exon 427636 428495 . + . ID=Physo156137.2;Parent=Physo156137;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 428826 429076 . + 0 ID=Physo156137;Parent=Physo156137;rank=3 scaffold_11 . CDS 429116 429286 . + 0 ID=Physo156137;Parent=Physo156137;rank=4 scaffold_11 . repeat_region 431031 431077 . ? . description=trf scaffold_11 . repeat_region 431621 431695 . ? . description=trf scaffold_11 . repeat_region 431621 431696 . ? . description=trf scaffold_11 . repeat_region 431857 431942 . ? . description=trf scaffold_11 . repeat_region 435462 435469 . ? . description=dust scaffold_11 . exon 428826 429076 . + . ID=Physo156137.3;Parent=Physo156137;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . exon 429116 429286 . + . ID=Physo156137.4;Parent=Physo156137;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 435548 437252 . + . ID=Physo156138;biotype=protein_coding;external_name=C_scaffold_11000033;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 435548 437252 . + . ID=Physo156138;Parent=Physo156138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 435548 435610 . + 0 ID=Physo156138;Parent=Physo156138;rank=1 scaffold_11 . exon 435548 435610 . + . ID=Physo156138.1;Parent=Physo156138;constitutive=1;rank=1 scaffold_11 . CDS 435678 435743 . + 0 ID=Physo156138;Parent=Physo156138;rank=2 scaffold_11 . exon 435678 435743 . + . ID=Physo156138.2;Parent=Physo156138;constitutive=1;rank=2 scaffold_11 . CDS 435819 435925 . + 0 ID=Physo156138;Parent=Physo156138;rank=3 scaffold_11 . exon 435819 435925 . + . ID=Physo156138.3;Parent=Physo156138;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 436117 436258 . + 0 ID=Physo156138;Parent=Physo156138;rank=4 scaffold_11 . exon 436117 436258 . + . ID=Physo156138.4;Parent=Physo156138;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 436333 437189 . + 0 ID=Physo156138;Parent=Physo156138;rank=5 scaffold_11 . exon 436333 437189 . + . ID=Physo156138.5;Parent=Physo156138;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_11 . CDS 437243 437252 . + 0 ID=Physo156138;Parent=Physo156138;rank=6 scaffold_11 . exon 437243 437252 . + . ID=Physo156138.6;Parent=Physo156138;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 ensembl protein_coding_gene 437578 439222 . - . ID=Physo156141;biotype=protein_coding;external_name=C_scaffold_11000036;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 437578 439222 . - . ID=Physo156141;Parent=Physo156141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 437578 438230 . - 0 ID=Physo156141;Parent=Physo156141;rank=4 scaffold_11 . exon 437578 438230 . - . ID=Physo156141.4;Parent=Physo156141;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 438299 438351 . - 0 ID=Physo156141;Parent=Physo156141;rank=3 scaffold_11 . CDS 438948 439078 . - 0 ID=Physo156141;Parent=Physo156141;rank=2 scaffold_11 . CDS 439148 439222 . - 0 ID=Physo156141;Parent=Physo156141;rank=1 scaffold_11 . biological_region 439097 439098 0.999 - . logic_name=eponine scaffold_11 . biological_region 439642 439642 0.999 + . logic_name=eponine scaffold_11 . biological_region 441680 441682 0.999 + . logic_name=eponine scaffold_11 . biological_region 442304 442307 0.999 - . logic_name=eponine scaffold_11 . biological_region 443369 443370 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 439413 440547 . + . ID=Physo130435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110104;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 439413 440547 . + . ID=Physo130435;Parent=Physo130435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 439413 439532 . + 0 ID=Physo130435;Parent=Physo130435;rank=1 scaffold_11 . exon 439413 439532 . + . ID=Physo130435.1;Parent=Physo130435;constitutive=1;rank=1 scaffold_11 . CDS 439646 440240 . + 0 ID=Physo130435;Parent=Physo130435;rank=2 scaffold_11 . exon 439646 440240 . + . ID=Physo130435.2;Parent=Physo130435;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 440306 440547 . + 0 ID=Physo130435;Parent=Physo130435;rank=3 scaffold_11 . exon 440306 440547 . + . ID=Physo130435.3;Parent=Physo130435;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 ensembl protein_coding_gene 443187 444824 . + . ID=Physo130438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110107;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 443187 444824 . + . ID=Physo130438;Parent=Physo130438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 443187 443564 . + . ID=Physo130438.1;Parent=Physo130438;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_11 . CDS 443224 443564 . + 0 ID=Physo130438;Parent=Physo130438;rank=1 scaffold_11 . CDS 443651 444824 . + 0 ID=Physo130438;Parent=Physo130438;rank=2 scaffold_11 . exon 443651 444824 . + . ID=Physo130438.2;Parent=Physo130438;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . exon 438299 438351 . - . ID=Physo156141.3;Parent=Physo156141;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . exon 438948 439078 . - . ID=Physo156141.2;Parent=Physo156141;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . exon 439148 439222 . - . ID=Physo156141.1;Parent=Physo156141;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 440729 441033 . - . ID=Physo156145;biotype=protein_coding;external_name=C_scaffold_11000040;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 440729 441033 . - . ID=Physo156145;Parent=Physo156145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 440729 440829 . - 0 ID=Physo156145;Parent=Physo156145;rank=2 scaffold_11 . exon 440729 440829 . - . ID=Physo156145.2;Parent=Physo156145;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 440919 441033 . - 0 ID=Physo156145;Parent=Physo156145;rank=1 scaffold_11 . exon 440919 441033 . - . ID=Physo156145.1;Parent=Physo156145;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 441165 442021 . + . ID=Physo156146;biotype=protein_coding;external_name=C_scaffold_11000041;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 441165 442021 . + . ID=Physo156146;Parent=Physo156146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 441165 441821 . + 0 ID=Physo156146;Parent=Physo156146;rank=1 scaffold_11 . exon 441165 441821 . + . ID=Physo156146.1;Parent=Physo156146;constitutive=1;rank=1 scaffold_11 . CDS 441896 442021 . + 0 ID=Physo156146;Parent=Physo156146;rank=2 scaffold_11 . exon 441896 442021 . + . ID=Physo156146.2;Parent=Physo156146;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 442129 442647 . - . ID=Physo156147;biotype=protein_coding;external_name=C_scaffold_11000042;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 442129 442647 . - . ID=Physo156147;Parent=Physo156147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 442129 442326 . - 0 ID=Physo156147;Parent=Physo156147;rank=2 scaffold_11 . exon 442129 442326 . - . ID=Physo156147.2;Parent=Physo156147;constitutive=1;rank=2 scaffold_11 . CDS 442351 442647 . - 0 ID=Physo156147;Parent=Physo156147;rank=1 scaffold_11 . exon 442351 442647 . - . ID=Physo156147.1;Parent=Physo156147;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 445023 449521 . - . ID=Physo156149;biotype=protein_coding;external_name=C_scaffold_11000044;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 445023 449521 . - . ID=Physo156149;Parent=Physo156149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 445023 445044 . - 0 ID=Physo156149;Parent=Physo156149;rank=7 scaffold_11 . exon 445023 445044 . - . ID=Physo156149.7;Parent=Physo156149;constitutive=1;ensembl_phase=2;rank=7 scaffold_11 . CDS 445196 446046 . - 0 ID=Physo156149;Parent=Physo156149;rank=6 scaffold_11 . exon 445196 446046 . - . ID=Physo156149.6;Parent=Physo156149;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_11 . CDS 446143 446455 . - 0 ID=Physo156149;Parent=Physo156149;rank=5 scaffold_11 . exon 446143 446455 . - . ID=Physo156149.5;Parent=Physo156149;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 446519 446576 . - 0 ID=Physo156149;Parent=Physo156149;rank=4 scaffold_11 . exon 446519 446576 . - . ID=Physo156149.4;Parent=Physo156149;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_11 . CDS 447123 447507 . - 0 ID=Physo156149;Parent=Physo156149;rank=3 scaffold_11 . exon 447123 447507 . - . ID=Physo156149.3;Parent=Physo156149;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 447565 448820 . - 0 ID=Physo156149;Parent=Physo156149;rank=2 scaffold_11 . exon 447565 448820 . - . ID=Physo156149.2;Parent=Physo156149;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 449023 449521 . - 0 ID=Physo156149;Parent=Physo156149;rank=1 scaffold_11 . repeat_region 450783 450790 . ? . description=dust scaffold_11 . repeat_region 452339 452377 . ? . description=dust scaffold_11 ensembl protein_coding_gene 457906 458852 . - . ID=Physo108482;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110013;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 457906 458852 . - . ID=Physo108482;Parent=Physo108482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 457906 458852 . - . ID=Physo108482.1;Parent=Physo108482;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 457984 458847 . - 0 ID=Physo108482;Parent=Physo108482;rank=1 scaffold_11 ensembl protein_coding_gene 450003 455184 . + . ID=Physo130440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110109;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 450003 455184 . + . ID=Physo130440;Parent=Physo130440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 450003 450400 . + 0 ID=Physo130440;Parent=Physo130440;rank=1 scaffold_11 . exon 450003 450400 . + . ID=Physo130440.1;Parent=Physo130440;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 450501 450719 . + 0 ID=Physo130440;Parent=Physo130440;rank=2 scaffold_11 . exon 450501 450719 . + . ID=Physo130440.2;Parent=Physo130440;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 450802 450904 . + 0 ID=Physo130440;Parent=Physo130440;rank=3 scaffold_11 . exon 450802 450904 . + . ID=Physo130440.3;Parent=Physo130440;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 450983 452074 . + 0 ID=Physo130440;Parent=Physo130440;rank=4 scaffold_11 . exon 450983 452074 . + . ID=Physo130440.4;Parent=Physo130440;constitutive=1;rank=4 scaffold_11 . CDS 452386 455184 . + 0 ID=Physo130440;Parent=Physo130440;rank=5 scaffold_11 . exon 452386 455184 . + . ID=Physo130440.5;Parent=Physo130440;constitutive=1;rank=5 scaffold_11 ensembl protein_coding_gene 456712 457580 . + . ID=Physo130442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110111;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 456712 457580 . + . ID=Physo130442;Parent=Physo130442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 456712 457247 . + 0 ID=Physo130442;Parent=Physo130442;rank=1 scaffold_11 . exon 456712 457247 . + . ID=Physo130442.1;Parent=Physo130442;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 457356 457431 . + 0 ID=Physo130442;Parent=Physo130442;rank=2 scaffold_11 . exon 457356 457431 . + . ID=Physo130442.2;Parent=Physo130442;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 457506 457580 . + 0 ID=Physo130442;Parent=Physo130442;rank=3 scaffold_11 . exon 457506 457580 . + . ID=Physo130442.3;Parent=Physo130442;constitutive=1;rank=3 scaffold_11 . exon 449023 449521 . - . ID=Physo156149.1;Parent=Physo156149;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 455425 456353 . - . ID=Physo156153;biotype=protein_coding;external_name=C_scaffold_11000048;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 455425 456353 . - . ID=Physo156153;Parent=Physo156153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 455425 455610 . - 0 ID=Physo156153;Parent=Physo156153;rank=2 scaffold_11 . exon 455425 455610 . - . ID=Physo156153.2;Parent=Physo156153;constitutive=1;rank=2 scaffold_11 . CDS 455694 456353 . - 0 ID=Physo156153;Parent=Physo156153;rank=1 scaffold_11 . exon 455694 456353 . - . ID=Physo156153.1;Parent=Physo156153;constitutive=1;rank=1 scaffold_11 . biological_region 458430 458431 0.999 + . logic_name=eponine scaffold_11 . biological_region 459148 459150 0.999 - . logic_name=eponine scaffold_11 . biological_region 459900 459903 0.999 - . logic_name=eponine scaffold_11 . biological_region 460087 460090 0.999 + . logic_name=eponine scaffold_11 . biological_region 460524 460525 0.999 + . logic_name=eponine scaffold_11 . biological_region 462055 462058 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 459143 460125 . - . ID=Physo108483;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110014;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 459143 460125 . - . ID=Physo108483;Parent=Physo108483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 459143 459369 . - . ID=Physo108483.4;Parent=Physo108483;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_11 . CDS 459292 459369 . - 0 ID=Physo108483;Parent=Physo108483;rank=4 scaffold_11 . CDS 459459 459640 . - 0 ID=Physo108483;Parent=Physo108483;rank=3 scaffold_11 . exon 459459 459640 . - . ID=Physo108483.3;Parent=Physo108483;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 459729 459929 . - 0 ID=Physo108483;Parent=Physo108483;rank=2 scaffold_11 . exon 459729 459929 . - . ID=Physo108483.2;Parent=Physo108483;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 460058 460109 . - 0 ID=Physo108483;Parent=Physo108483;rank=1 scaffold_11 . exon 460058 460125 . - . ID=Physo108483.1;Parent=Physo108483;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_11 ensembl protein_coding_gene 460367 461727 . - . ID=Physo130445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110114;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 460367 461727 . - . ID=Physo130445;Parent=Physo130445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 460367 460844 . - 0 ID=Physo130445;Parent=Physo130445;rank=4 scaffold_11 . exon 460367 460844 . - . ID=Physo130445.4;Parent=Physo130445;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 460931 461165 . - 0 ID=Physo130445;Parent=Physo130445;rank=3 scaffold_11 . exon 460931 461165 . - . ID=Physo130445.3;Parent=Physo130445;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 461288 461566 . - 0 ID=Physo130445;Parent=Physo130445;rank=2 scaffold_11 . exon 461288 461566 . - . ID=Physo130445.2;Parent=Physo130445;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 461652 461727 . - 0 ID=Physo130445;Parent=Physo130445;rank=1 scaffold_11 . exon 461652 461727 . - . ID=Physo130445.1;Parent=Physo130445;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 463235 466546 . + . ID=Physo130446;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110115;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 463235 466546 . + . ID=Physo130446;Parent=Physo130446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 463235 463336 . + . ID=Physo130446.1;Parent=Physo130446;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 463265 463336 . + 0 ID=Physo130446;Parent=Physo130446;rank=1 scaffold_11 . CDS 463431 463571 . + 0 ID=Physo130446;Parent=Physo130446;rank=2 scaffold_11 . exon 463431 463571 . + . ID=Physo130446.2;Parent=Physo130446;constitutive=1;rank=2 scaffold_11 . CDS 463649 463765 . + 0 ID=Physo130446;Parent=Physo130446;rank=3 scaffold_11 . exon 463649 463765 . + . ID=Physo130446.3;Parent=Physo130446;constitutive=1;rank=3 scaffold_11 . CDS 463844 466546 . + 0 ID=Physo130446;Parent=Physo130446;rank=4 scaffold_11 . exon 463844 466546 . + . ID=Physo130446.4;Parent=Physo130446;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 467071 467809 . - . ID=Physo130447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110116;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 467071 467809 . - . ID=Physo130447;Parent=Physo130447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 467071 467141 . - 0 ID=Physo130447;Parent=Physo130447;rank=3 scaffold_11 . exon 467071 467141 . - . ID=Physo130447.3;Parent=Physo130447;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 467209 467502 . - 0 ID=Physo130447;Parent=Physo130447;rank=2 scaffold_11 . exon 467209 467502 . - . ID=Physo130447.2;Parent=Physo130447;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 467590 467809 . - 0 ID=Physo130447;Parent=Physo130447;rank=1 scaffold_11 . exon 467590 467809 . - . ID=Physo130447.1;Parent=Physo130447;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . repeat_region 470415 470434 . ? . description=trf scaffold_11 . repeat_region 471146 471162 . ? . description=dust scaffold_11 . repeat_region 472187 472206 . ? . description=trf scaffold_11 . repeat_region 475574 475581 . ? . description=dust scaffold_11 . repeat_region 477045 477076 . ? . description=trf scaffold_11 . repeat_region 477447 477483 . ? . description=trf scaffold_11 ensembl protein_coding_gene 468028 468710 . - . ID=Physo130448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110117;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 468028 468710 . - . ID=Physo130448;Parent=Physo130448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 468028 468192 . - 0 ID=Physo130448;Parent=Physo130448;rank=3 scaffold_11 . exon 468028 468192 . - . ID=Physo130448.3;Parent=Physo130448;constitutive=1;rank=3 scaffold_11 . CDS 468289 468543 . - 0 ID=Physo130448;Parent=Physo130448;rank=2 scaffold_11 . exon 468289 468543 . - . ID=Physo130448.2;Parent=Physo130448;constitutive=1;rank=2 scaffold_11 . CDS 468630 468710 . - 0 ID=Physo130448;Parent=Physo130448;rank=1 scaffold_11 . exon 468630 468710 . - . ID=Physo130448.1;Parent=Physo130448;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 474646 474975 . - . ID=Physo130450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110119;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 474646 474975 . - . ID=Physo130450;Parent=Physo130450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 474646 474975 . - 0 ID=Physo130450;Parent=Physo130450;rank=1 scaffold_11 . exon 474646 474975 . - . ID=Physo130450.1;Parent=Physo130450;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 475352 477524 . + . ID=Physo130451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110120;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 475352 477524 . + . ID=Physo130451;Parent=Physo130451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 475352 475623 . + 0 ID=Physo130451;Parent=Physo130451;rank=1 scaffold_11 . exon 475352 475623 . + . ID=Physo130451.1;Parent=Physo130451;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 475692 475765 . + 0 ID=Physo130451;Parent=Physo130451;rank=2 scaffold_11 . exon 475692 475765 . + . ID=Physo130451.2;Parent=Physo130451;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 475837 475951 . + 0 ID=Physo130451;Parent=Physo130451;rank=3 scaffold_11 . exon 475837 475951 . + . ID=Physo130451.3;Parent=Physo130451;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 476033 477524 . + 0 ID=Physo130451;Parent=Physo130451;rank=4 scaffold_11 . exon 476033 477524 . + . ID=Physo130451.4;Parent=Physo130451;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 ensembl protein_coding_gene 477837 478441 . + . ID=Physo130452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110121;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 477837 478441 . + . ID=Physo130452;Parent=Physo130452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 477837 478439 . + 0 ID=Physo130452;Parent=Physo130452;rank=1 scaffold_11 . exon 477837 478441 . + . ID=Physo130452.1;Parent=Physo130452;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_11 ensembl protein_coding_gene 473248 474593 . + . ID=Physo156155;biotype=protein_coding;external_name=C_scaffold_11000050;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 473248 474593 . + . ID=Physo156155;Parent=Physo156155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 473248 473385 . + 0 ID=Physo156155;Parent=Physo156155;rank=1 scaffold_11 . exon 473248 473385 . + . ID=Physo156155.1;Parent=Physo156155;constitutive=1;rank=1 scaffold_11 . CDS 473926 473991 . + 0 ID=Physo156155;Parent=Physo156155;rank=2 scaffold_11 . exon 473926 473991 . + . ID=Physo156155.2;Parent=Physo156155;constitutive=1;rank=2 scaffold_11 . CDS 474078 474332 . + 0 ID=Physo156155;Parent=Physo156155;rank=3 scaffold_11 . exon 474078 474332 . + . ID=Physo156155.3;Parent=Physo156155;constitutive=1;rank=3 scaffold_11 . CDS 474429 474593 . + 0 ID=Physo156155;Parent=Physo156155;rank=4 scaffold_11 . exon 474429 474593 . + . ID=Physo156155.4;Parent=Physo156155;constitutive=1;rank=4 scaffold_11 . biological_region 478064 478069 0.999 + . logic_name=eponine scaffold_11 . biological_region 478143 478143 0.999 - . logic_name=eponine scaffold_11 . biological_region 480980 480983 0.999 + . logic_name=eponine scaffold_11 . biological_region 481024 481028 0.999 + . logic_name=eponine scaffold_11 . biological_region 481615 481615 0.999 + . logic_name=eponine scaffold_11 . biological_region 481972 481973 0.999 + . logic_name=eponine scaffold_11 . biological_region 482258 482265 0.999 + . logic_name=eponine scaffold_11 . biological_region 482367 482375 0.999 - . logic_name=eponine scaffold_11 . biological_region 482601 482604 0.999 + . logic_name=eponine scaffold_11 . biological_region 483099 483101 0.999 - . logic_name=eponine scaffold_11 . biological_region 483155 483155 0.999 + . logic_name=eponine scaffold_11 . biological_region 483182 483182 0.999 - . logic_name=eponine scaffold_11 . biological_region 483234 483237 0.999 + . logic_name=eponine scaffold_11 . biological_region 483261 483263 0.999 + . logic_name=eponine scaffold_11 . biological_region 483293 483299 0.999 - . logic_name=eponine scaffold_11 . biological_region 483845 483849 0.999 + . logic_name=eponine scaffold_11 . biological_region 483945 483945 0.999 + . logic_name=eponine scaffold_11 . biological_region 483967 483970 0.999 - . logic_name=eponine scaffold_11 . biological_region 483977 483980 0.999 - . logic_name=eponine scaffold_11 . biological_region 484002 484012 0.999 + . logic_name=eponine scaffold_11 . biological_region 484013 484018 0.999 - . logic_name=eponine scaffold_11 . biological_region 484069 484071 0.999 + . logic_name=eponine scaffold_11 . biological_region 484072 484077 0.999 - . logic_name=eponine scaffold_11 . biological_region 484082 484084 0.999 - . logic_name=eponine scaffold_11 . biological_region 484094 484096 0.999 + . logic_name=eponine scaffold_11 . biological_region 484138 484154 0.999 - . logic_name=eponine scaffold_11 . biological_region 484180 484185 0.999 - . logic_name=eponine scaffold_11 . biological_region 484197 484197 0.999 - . logic_name=eponine scaffold_11 . biological_region 484305 484308 0.999 - . logic_name=eponine scaffold_11 . biological_region 484522 484522 0.999 - . logic_name=eponine scaffold_11 . biological_region 485494 485494 0.999 - . logic_name=eponine scaffold_11 . biological_region 485531 485533 0.999 + . logic_name=eponine scaffold_11 . biological_region 485540 485540 0.999 - . logic_name=eponine scaffold_11 . biological_region 485567 485572 0.999 - . logic_name=eponine scaffold_11 . biological_region 485708 485708 0.999 + . logic_name=eponine scaffold_11 . biological_region 485804 485806 0.999 - . logic_name=eponine scaffold_11 . biological_region 485952 485957 0.999 - . logic_name=eponine scaffold_11 . biological_region 486194 486195 0.999 + . logic_name=eponine scaffold_11 . biological_region 486362 486364 0.999 + . logic_name=eponine scaffold_11 . biological_region 487169 487172 0.999 + . logic_name=eponine scaffold_11 . biological_region 487173 487176 0.999 - . logic_name=eponine scaffold_11 . biological_region 487189 487194 0.999 - . logic_name=eponine scaffold_11 . biological_region 487204 487206 0.999 - . logic_name=eponine scaffold_11 . biological_region 487218 487221 0.999 - . logic_name=eponine scaffold_11 . biological_region 487816 487816 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 482583 484101 . - . ID=Physo130453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110122;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 482583 484101 . - . ID=Physo130453;Parent=Physo130453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 482583 483272 . - 0 ID=Physo130453;Parent=Physo130453;rank=3 scaffold_11 . exon 482583 483272 . - . ID=Physo130453.3;Parent=Physo130453;constitutive=1;rank=3 scaffold_11 . CDS 483595 483772 . - 0 ID=Physo130453;Parent=Physo130453;rank=2 scaffold_11 . exon 483595 483772 . - . ID=Physo130453.2;Parent=Physo130453;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 483875 484101 . - 0 ID=Physo130453;Parent=Physo130453;rank=1 scaffold_11 . exon 483875 484101 . - . ID=Physo130453.1;Parent=Physo130453;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 485413 488499 . - . ID=Physo130454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110123;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 485413 488499 . - . ID=Physo130454;Parent=Physo130454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 485413 486886 . - 0 ID=Physo130454;Parent=Physo130454;rank=2 scaffold_11 . exon 485413 486886 . - . ID=Physo130454.2;Parent=Physo130454;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 486932 488499 . - 0 ID=Physo130454;Parent=Physo130454;rank=1 scaffold_11 . exon 486932 488499 . - . ID=Physo130454.1;Parent=Physo130454;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . repeat_region 497260 497309 . ? . description=dust scaffold_11 ensembl protein_coding_gene 489576 491812 . + . ID=Physo130455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110124;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 489576 491812 . + . ID=Physo130455;Parent=Physo130455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 489576 489640 . + 0 ID=Physo130455;Parent=Physo130455;rank=1 scaffold_11 . exon 489576 489640 . + . ID=Physo130455.1;Parent=Physo130455;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 489673 490460 . + 0 ID=Physo130455;Parent=Physo130455;rank=2 scaffold_11 . exon 489673 490460 . + . ID=Physo130455.2;Parent=Physo130455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 490514 490565 . + 0 ID=Physo130455;Parent=Physo130455;rank=3 scaffold_11 . exon 490514 490565 . + . ID=Physo130455.3;Parent=Physo130455;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 490627 491812 . + 0 ID=Physo130455;Parent=Physo130455;rank=4 scaffold_11 . exon 490627 491812 . + . ID=Physo130455.4;Parent=Physo130455;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 ensembl protein_coding_gene 494752 497842 . - . ID=Physo130456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110125;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 494752 497842 . - . ID=Physo130456;Parent=Physo130456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 494752 495162 . - 0 ID=Physo130456;Parent=Physo130456;rank=7 scaffold_11 . exon 494752 495162 . - . ID=Physo130456.7;Parent=Physo130456;constitutive=1;rank=7 scaffold_11 . CDS 495205 496370 . - 0 ID=Physo130456;Parent=Physo130456;rank=6 scaffold_11 . exon 495205 496370 . - . ID=Physo130456.6;Parent=Physo130456;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 496489 496585 . - 0 ID=Physo130456;Parent=Physo130456;rank=5 scaffold_11 . exon 496489 496585 . - . ID=Physo130456.5;Parent=Physo130456;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 496686 497051 . - 0 ID=Physo130456;Parent=Physo130456;rank=4 scaffold_11 . exon 496686 497051 . - . ID=Physo130456.4;Parent=Physo130456;constitutive=1;rank=4 scaffold_11 . CDS 497115 497210 . - 0 ID=Physo130456;Parent=Physo130456;rank=3 scaffold_11 . exon 497115 497210 . - . ID=Physo130456.3;Parent=Physo130456;constitutive=1;rank=3 scaffold_11 . CDS 497369 497692 . - 0 ID=Physo130456;Parent=Physo130456;rank=2 scaffold_11 . exon 497369 497692 . - . ID=Physo130456.2;Parent=Physo130456;constitutive=1;rank=2 scaffold_11 . CDS 497771 497842 . - 0 ID=Physo130456;Parent=Physo130456;rank=1 scaffold_11 . exon 497771 497842 . - . ID=Physo130456.1;Parent=Physo130456;constitutive=1;rank=1 scaffold_11 . repeat_region 499879 499899 . ? . description=trf scaffold_11 . biological_region 500466 500466 0.999 - . logic_name=eponine scaffold_11 . biological_region 502591 502596 0.999 + . logic_name=eponine scaffold_11 . biological_region 502998 503000 0.999 + . logic_name=eponine scaffold_11 . biological_region 503544 503547 0.999 - . logic_name=eponine scaffold_11 . biological_region 506566 506570 0.999 + . logic_name=eponine scaffold_11 . biological_region 506594 506594 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 503207 504562 . - . ID=Physo108484;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110015;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 503207 504562 . - . ID=Physo108484;Parent=Physo108484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 503207 504256 . - 0 ID=Physo108484;Parent=Physo108484;rank=2 scaffold_11 . exon 503207 504256 . - . ID=Physo108484.2;Parent=Physo108484;constitutive=1;rank=2 scaffold_11 . CDS 504434 504562 . - 0 ID=Physo108484;Parent=Physo108484;rank=1 scaffold_11 . exon 504434 504562 . - . ID=Physo108484.1;Parent=Physo108484;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 500842 502984 . + . ID=Physo130457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110126;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 500842 502984 . + . ID=Physo130457;Parent=Physo130457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 500842 501075 . + 0 ID=Physo130457;Parent=Physo130457;rank=1 scaffold_11 . exon 500842 501075 . + . ID=Physo130457.1;Parent=Physo130457;constitutive=1;rank=1 scaffold_11 . CDS 501137 502828 . + 0 ID=Physo130457;Parent=Physo130457;rank=2 scaffold_11 . exon 501137 502828 . + . ID=Physo130457.2;Parent=Physo130457;constitutive=1;rank=2 scaffold_11 . CDS 502865 502984 . + 0 ID=Physo130457;Parent=Physo130457;rank=3 scaffold_11 . exon 502865 502984 . + . ID=Physo130457.3;Parent=Physo130457;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 504678 506090 . - . ID=Physo130459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110128;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 504678 506090 . - . ID=Physo130459;Parent=Physo130459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 504678 506090 . - 0 ID=Physo130459;Parent=Physo130459;rank=1 scaffold_11 . exon 504678 506090 . - . ID=Physo130459.1;Parent=Physo130459;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 506447 506896 . + . ID=Physo130460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110129;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 506447 506896 . + . ID=Physo130460;Parent=Physo130460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 506447 506703 . + 0 ID=Physo130460;Parent=Physo130460;rank=1 scaffold_11 . exon 506447 506703 . + . ID=Physo130460.1;Parent=Physo130460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 506791 506896 . + 0 ID=Physo130460;Parent=Physo130460;rank=2 scaffold_11 . exon 506791 506896 . + . ID=Physo130460.2;Parent=Physo130460;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 ensembl protein_coding_gene 506979 508304 . - . ID=Physo130461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110130;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 506979 508304 . - . ID=Physo130461;Parent=Physo130461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 506979 508304 . - 0 ID=Physo130461;Parent=Physo130461;rank=1 scaffold_11 . exon 506979 508304 . - . ID=Physo130461.1;Parent=Physo130461;constitutive=1;rank=1 scaffold_11 . repeat_region 510635 510670 . ? . description=dust scaffold_11 . repeat_region 514834 514883 . ? . description=dust scaffold_11 ensembl protein_coding_gene 516135 517334 . + . ID=Physo108485;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110016;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 516135 517334 . + . ID=Physo108485;Parent=Physo108485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 516135 517220 . + 0 ID=Physo108485;Parent=Physo108485;rank=1 scaffold_11 . exon 516135 517334 . + . ID=Physo108485.1;Parent=Physo108485;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_11 ensembl protein_coding_gene 511778 514325 . - . ID=Physo130464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110133;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 511778 514325 . - . ID=Physo130464;Parent=Physo130464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 511778 512489 . - . ID=Physo130464.6;Parent=Physo130464;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_11 . CDS 511948 512489 . - 0 ID=Physo130464;Parent=Physo130464;rank=6 scaffold_11 . CDS 512582 512800 . - 0 ID=Physo130464;Parent=Physo130464;rank=5 scaffold_11 . exon 512582 512800 . - . ID=Physo130464.5;Parent=Physo130464;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_11 . CDS 513193 513484 . - 0 ID=Physo130464;Parent=Physo130464;rank=4 scaffold_11 . exon 513193 513484 . - . ID=Physo130464.4;Parent=Physo130464;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_11 . CDS 513554 513664 . - 0 ID=Physo130464;Parent=Physo130464;rank=3 scaffold_11 . exon 513554 513664 . - . ID=Physo130464.3;Parent=Physo130464;constitutive=1;rank=3 scaffold_11 . CDS 513742 514115 . - 0 ID=Physo130464;Parent=Physo130464;rank=2 scaffold_11 . exon 513742 514115 . - . ID=Physo130464.2;Parent=Physo130464;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 514268 514325 . - 0 ID=Physo130464;Parent=Physo130464;rank=1 scaffold_11 . exon 514268 514325 . - . ID=Physo130464.1;Parent=Physo130464;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 517573 518850 . - . ID=Physo130466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110135;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 517573 518850 . - . ID=Physo130466;Parent=Physo130466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 517573 518850 . - 0 ID=Physo130466;Parent=Physo130466;rank=1 scaffold_11 . exon 517573 518850 . - . ID=Physo130466.1;Parent=Physo130466;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 509030 510308 . - . ID=Physo156159;biotype=protein_coding;external_name=C_scaffold_11000054;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 509030 510308 . - . ID=Physo156159;Parent=Physo156159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 509030 509875 . - 0 ID=Physo156159;Parent=Physo156159;rank=4 scaffold_11 . exon 509030 509875 . - . ID=Physo156159.4;Parent=Physo156159;constitutive=1;rank=4 scaffold_11 . CDS 509977 510050 . - 0 ID=Physo156159;Parent=Physo156159;rank=3 scaffold_11 . exon 509977 510050 . - . ID=Physo156159.3;Parent=Physo156159;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 510151 510157 . - 0 ID=Physo156159;Parent=Physo156159;rank=2 scaffold_11 . exon 510151 510157 . - . ID=Physo156159.2;Parent=Physo156159;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 510246 510308 . - 0 ID=Physo156159;Parent=Physo156159;rank=1 scaffold_11 . exon 510246 510308 . - . ID=Physo156159.1;Parent=Physo156159;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 510604 511642 . + . ID=Physo156160;biotype=protein_coding;external_name=C_scaffold_11000055;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 510604 511642 . + . ID=Physo156160;Parent=Physo156160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 510604 510980 . + 0 ID=Physo156160;Parent=Physo156160;rank=1 scaffold_11 . exon 510604 510980 . + . ID=Physo156160.1;Parent=Physo156160;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 511052 511174 . + 0 ID=Physo156160;Parent=Physo156160;rank=2 scaffold_11 . exon 511052 511174 . + . ID=Physo156160.2;Parent=Physo156160;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 511279 511375 . + 0 ID=Physo156160;Parent=Physo156160;rank=3 scaffold_11 . exon 511279 511375 . + . ID=Physo156160.3;Parent=Physo156160;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 511457 511642 . + 0 ID=Physo156160;Parent=Physo156160;rank=4 scaffold_11 . exon 511457 511642 . + . ID=Physo156160.4;Parent=Physo156160;constitutive=1;rank=4 scaffold_11 . biological_region 518130 518132 0.999 + . logic_name=eponine scaffold_11 . biological_region 518206 518210 0.999 - . logic_name=eponine scaffold_11 . biological_region 518496 518497 0.999 + . logic_name=eponine scaffold_11 . biological_region 518522 518528 0.999 + . logic_name=eponine scaffold_11 . biological_region 518550 518556 0.999 + . logic_name=eponine scaffold_11 . biological_region 518566 518574 0.999 - . logic_name=eponine scaffold_11 . biological_region 518620 518625 0.999 - . logic_name=eponine scaffold_11 . repeat_region 519065 519102 . ? . description=trf scaffold_11 . biological_region 519067 519068 0.999 + . logic_name=eponine scaffold_11 . repeat_region 521835 521947 . ? . description=trf scaffold_11 . biological_region 522594 522596 0.999 + . logic_name=eponine scaffold_11 . biological_region 527660 527663 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 522268 523792 . + . ID=Physo130467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110136;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 522268 523792 . + . ID=Physo130467;Parent=Physo130467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 522268 522417 . + 0 ID=Physo130467;Parent=Physo130467;rank=1 scaffold_11 . exon 522268 522417 . + . ID=Physo130467.1;Parent=Physo130467;constitutive=1;rank=1 scaffold_11 . CDS 522491 523126 . + 0 ID=Physo130467;Parent=Physo130467;rank=2 scaffold_11 . exon 522491 523126 . + . ID=Physo130467.2;Parent=Physo130467;constitutive=1;rank=2 scaffold_11 . CDS 523212 523410 . + 0 ID=Physo130467;Parent=Physo130467;rank=3 scaffold_11 . exon 523212 523410 . + . ID=Physo130467.3;Parent=Physo130467;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 523472 523551 . + 0 ID=Physo130467;Parent=Physo130467;rank=4 scaffold_11 . exon 523472 523551 . + . ID=Physo130467.4;Parent=Physo130467;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 523625 523792 . + 0 ID=Physo130467;Parent=Physo130467;rank=5 scaffold_11 . exon 523625 523792 . + . ID=Physo130467.5;Parent=Physo130467;constitutive=1;rank=5 scaffold_11 ensembl protein_coding_gene 523911 529649 . - . ID=Physo130468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110137;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 523911 529649 . - . ID=Physo130468;Parent=Physo130468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 523911 524728 . - 0 ID=Physo130468;Parent=Physo130468;rank=4 scaffold_11 . exon 523911 524728 . - . ID=Physo130468.4;Parent=Physo130468;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 524752 527805 . - 0 ID=Physo130468;Parent=Physo130468;rank=3 scaffold_11 . exon 524752 527805 . - . ID=Physo130468.3;Parent=Physo130468;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 527989 528385 . - 0 ID=Physo130468;Parent=Physo130468;rank=2 scaffold_11 . CDS 528444 529649 . - 0 ID=Physo130468;Parent=Physo130468;rank=1 scaffold_11 . exon 527989 528385 . - . ID=Physo130468.2;Parent=Physo130468;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . exon 528444 529649 . - . ID=Physo130468.1;Parent=Physo130468;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 529811 530755 . + . ID=Physo130469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110138;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 529811 530755 . + . ID=Physo130469;Parent=Physo130469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 529811 530755 . + 0 ID=Physo130469;Parent=Physo130469;rank=1 scaffold_11 . exon 529811 530755 . + . ID=Physo130469.1;Parent=Physo130469;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 530848 532580 . - . ID=Physo130470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110139;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 530848 532580 . - . ID=Physo130470;Parent=Physo130470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 530848 531057 . - . ID=Physo130470.2;Parent=Physo130470;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_11 . CDS 531036 531057 . - 0 ID=Physo130470;Parent=Physo130470;rank=2 scaffold_11 . CDS 531166 532580 . - 0 ID=Physo130470;Parent=Physo130470;rank=1 scaffold_11 . exon 531166 532580 . - . ID=Physo130470.1;Parent=Physo130470;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 533204 534295 . + . ID=Physo130471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110140;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 533204 534295 . + . ID=Physo130471;Parent=Physo130471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 533204 533404 . + 0 ID=Physo130471;Parent=Physo130471;rank=1 scaffold_11 . exon 533204 533404 . + . ID=Physo130471.1;Parent=Physo130471;constitutive=1;rank=1 scaffold_11 . CDS 533486 534295 . + 0 ID=Physo130471;Parent=Physo130471;rank=2 scaffold_11 . exon 533486 534295 . + . ID=Physo130471.2;Parent=Physo130471;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 534431 535459 . + . ID=Physo130472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110141;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 534431 535459 . + . ID=Physo130472;Parent=Physo130472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 534431 535459 . + 0 ID=Physo130472;Parent=Physo130472;rank=1 scaffold_11 . exon 534431 535459 . + . ID=Physo130472.1;Parent=Physo130472;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 535645 539313 . - . ID=Physo130473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110142;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 535645 539313 . - . ID=Physo130473;Parent=Physo130473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 535645 539313 . - 0 ID=Physo130473;Parent=Physo130473;rank=1 scaffold_11 . exon 535645 539313 . - . ID=Physo130473.1;Parent=Physo130473;constitutive=1;rank=1 scaffold_11 . biological_region 537765 537769 0.999 + . logic_name=eponine scaffold_11 . repeat_region 541924 541931 . ? . description=dust scaffold_11 . repeat_region 541945 541954 . ? . description=dust scaffold_11 . biological_region 542246 542250 0.999 - . logic_name=eponine scaffold_11 . biological_region 542320 542330 0.999 + . logic_name=eponine scaffold_11 . biological_region 542365 542366 0.999 - . logic_name=eponine scaffold_11 . biological_region 542446 542448 0.999 + . logic_name=eponine scaffold_11 . biological_region 542490 542494 0.999 + . logic_name=eponine scaffold_11 . biological_region 542809 542811 0.999 + . logic_name=eponine scaffold_11 . repeat_region 542810 542842 . ? . description=trf scaffold_11 . biological_region 542893 542899 0.999 - . logic_name=eponine scaffold_11 . biological_region 542948 542955 0.999 + . logic_name=eponine scaffold_11 . biological_region 543179 543181 0.999 + . logic_name=eponine scaffold_11 . biological_region 543687 543693 0.999 - . logic_name=eponine scaffold_11 . biological_region 543778 543782 0.999 - . logic_name=eponine scaffold_11 . biological_region 543894 543900 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 542337 545477 . + . ID=Physo130474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110143;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 542337 545477 . + . ID=Physo130474;Parent=Physo130474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 542337 545477 . + 0 ID=Physo130474;Parent=Physo130474;rank=1 scaffold_11 . exon 542337 545477 . + . ID=Physo130474.1;Parent=Physo130474;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 546249 548984 . + . ID=Physo130475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110144;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 546249 548984 . + . ID=Physo130475;Parent=Physo130475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 546249 548948 . + 0 ID=Physo130475;Parent=Physo130475;rank=1 scaffold_11 . exon 546249 548984 . + . ID=Physo130475.1;Parent=Physo130475;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_11 . repeat_region 549136 555548 . - . description=Sola3-2_PS scaffold_11 ensembl protein_coding_gene 549105 550327 . - . ID=Physo130476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110145;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 549105 550327 . - . ID=Physo130476;Parent=Physo130476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 549105 549350 . - 0 ID=Physo130476;Parent=Physo130476;rank=4 scaffold_11 . exon 549105 549350 . - . ID=Physo130476.4;Parent=Physo130476;constitutive=1;rank=4 scaffold_11 . CDS 549461 549527 . - 0 ID=Physo130476;Parent=Physo130476;rank=3 scaffold_11 . exon 549461 549527 . - . ID=Physo130476.3;Parent=Physo130476;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 549619 549680 . - 0 ID=Physo130476;Parent=Physo130476;rank=2 scaffold_11 . exon 549619 549680 . - . ID=Physo130476.2;Parent=Physo130476;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 549803 550327 . - 0 ID=Physo130476;Parent=Physo130476;rank=1 scaffold_11 . exon 549803 550327 . - . ID=Physo130476.1;Parent=Physo130476;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 555768 557035 . + . ID=Physo130477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110146;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 555768 557035 . + . ID=Physo130477;Parent=Physo130477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 555768 556269 . + 0 ID=Physo130477;Parent=Physo130477;rank=1 scaffold_11 . exon 555768 556269 . + . ID=Physo130477.1;Parent=Physo130477;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 556333 556947 . + 0 ID=Physo130477;Parent=Physo130477;rank=2 scaffold_11 . exon 556333 556947 . + . ID=Physo130477.2;Parent=Physo130477;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 557004 557035 . + 0 ID=Physo130477;Parent=Physo130477;rank=3 scaffold_11 . exon 557004 557035 . + . ID=Physo130477.3;Parent=Physo130477;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . biological_region 559188 559189 0.999 + . logic_name=eponine scaffold_11 . biological_region 560268 560268 0.999 + . logic_name=eponine scaffold_11 . biological_region 560895 560896 0.999 - . logic_name=eponine scaffold_11 . biological_region 560949 560951 0.999 + . logic_name=eponine scaffold_11 . biological_region 560984 560988 0.999 - . logic_name=eponine scaffold_11 . repeat_region 564683 564703 . ? . description=trf scaffold_11 . biological_region 564881 564884 0.999 - . logic_name=eponine scaffold_11 . repeat_region 566111 566134 . ? . description=dust scaffold_11 . repeat_region 566111 566134 . ? . description=trf scaffold_11 . biological_region 566112 566115 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 559146 560666 . - . ID=Physo108486;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110017;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 559146 560666 . - . ID=Physo108486;Parent=Physo108486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 559146 560666 . - . ID=Physo108486.1;Parent=Physo108486;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 559452 560630 . - 0 ID=Physo108486;Parent=Physo108486;rank=1 scaffold_11 ensembl protein_coding_gene 561759 563211 . + . ID=Physo130479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110148;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 561759 563211 . + . ID=Physo130479;Parent=Physo130479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 561759 561851 . + 0 ID=Physo130479;Parent=Physo130479;rank=1 scaffold_11 . exon 561759 561851 . + . ID=Physo130479.1;Parent=Physo130479;constitutive=1;rank=1 scaffold_11 . CDS 561875 562362 . + 0 ID=Physo130479;Parent=Physo130479;rank=2 scaffold_11 . exon 561875 562362 . + . ID=Physo130479.2;Parent=Physo130479;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 562450 562571 . + 0 ID=Physo130479;Parent=Physo130479;rank=3 scaffold_11 . exon 562450 562571 . + . ID=Physo130479.3;Parent=Physo130479;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 562646 563211 . + 0 ID=Physo130479;Parent=Physo130479;rank=4 scaffold_11 . exon 562646 563211 . + . ID=Physo130479.4;Parent=Physo130479;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 ensembl protein_coding_gene 567325 567729 . - . ID=Physo130481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110150;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 567325 567729 . - . ID=Physo130481;Parent=Physo130481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 567325 567729 . - 0 ID=Physo130481;Parent=Physo130481;rank=1 scaffold_11 . exon 567325 567729 . - . ID=Physo130481.1;Parent=Physo130481;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 563265 565273 . - . ID=Physo156163;biotype=protein_coding;external_name=C_scaffold_11000058;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 563265 565273 . - . ID=Physo156163;Parent=Physo156163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 563265 563614 . - 0 ID=Physo156163;Parent=Physo156163;rank=5 scaffold_11 . exon 563265 563614 . - . ID=Physo156163.5;Parent=Physo156163;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 . CDS 563969 564102 . - 0 ID=Physo156163;Parent=Physo156163;rank=4 scaffold_11 . exon 563969 564102 . - . ID=Physo156163.4;Parent=Physo156163;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 564301 564665 . - 0 ID=Physo156163;Parent=Physo156163;rank=3 scaffold_11 . exon 564301 564665 . - . ID=Physo156163.3;Parent=Physo156163;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 564745 564996 . - 0 ID=Physo156163;Parent=Physo156163;rank=2 scaffold_11 . exon 564745 564996 . - . ID=Physo156163.2;Parent=Physo156163;constitutive=1;rank=2 scaffold_11 . CDS 565118 565273 . - 0 ID=Physo156163;Parent=Physo156163;rank=1 scaffold_11 . exon 565118 565273 . - . ID=Physo156163.1;Parent=Physo156163;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 568495 569664 . - . ID=Physo130482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110151;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 568495 569664 . - . ID=Physo130482;Parent=Physo130482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 568495 568654 . - 0 ID=Physo130482;Parent=Physo130482;rank=4 scaffold_11 . exon 568495 568654 . - . ID=Physo130482.4;Parent=Physo130482;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 568702 568724 . - 0 ID=Physo130482;Parent=Physo130482;rank=3 scaffold_11 . exon 568702 568724 . - . ID=Physo130482.3;Parent=Physo130482;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 568877 569206 . - 0 ID=Physo130482;Parent=Physo130482;rank=2 scaffold_11 . exon 568877 569206 . - . ID=Physo130482.2;Parent=Physo130482;constitutive=1;rank=2 scaffold_11 . CDS 569419 569664 . - 0 ID=Physo130482;Parent=Physo130482;rank=1 scaffold_11 . exon 569419 569664 . - . ID=Physo130482.1;Parent=Physo130482;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 569881 573145 . - . ID=Physo130483;biotype=protein_coding;description=Calcium/calmodulin dependent protein kinase 4 [Source:UniProtKB/TrEMBL%3BAcc:B5M4U8];external_name=estExt_fgenesh1_pg.C_110152;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 569881 573145 . - . ID=Physo130483;Parent=Physo130483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 569881 570163 . - 0 ID=Physo130483;Parent=Physo130483;rank=12 scaffold_11 . exon 569881 570163 . - . ID=Physo130483.12;Parent=Physo130483;constitutive=1;ensembl_phase=2;rank=12 scaffold_11 . CDS 570233 570696 . - 0 ID=Physo130483;Parent=Physo130483;rank=11 scaffold_11 . exon 570233 570696 . - . ID=Physo130483.11;Parent=Physo130483;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_11 . CDS 570766 570879 . - 0 ID=Physo130483;Parent=Physo130483;rank=10 scaffold_11 . exon 570766 570879 . - . ID=Physo130483.10;Parent=Physo130483;constitutive=1;rank=10 scaffold_11 . CDS 570959 571234 . - 0 ID=Physo130483;Parent=Physo130483;rank=9 scaffold_11 . exon 570959 571234 . - . ID=Physo130483.9;Parent=Physo130483;constitutive=1;rank=9 scaffold_11 . CDS 571317 571352 . - 0 ID=Physo130483;Parent=Physo130483;rank=8 scaffold_11 . exon 571317 571352 . - . ID=Physo130483.8;Parent=Physo130483;constitutive=1;rank=8 scaffold_11 . CDS 571720 571938 . - 0 ID=Physo130483;Parent=Physo130483;rank=7 scaffold_11 . exon 571720 571938 . - . ID=Physo130483.7;Parent=Physo130483;constitutive=1;rank=7 scaffold_11 . CDS 572019 572099 . - 0 ID=Physo130483;Parent=Physo130483;rank=6 scaffold_11 . exon 572019 572099 . - . ID=Physo130483.6;Parent=Physo130483;constitutive=1;rank=6 scaffold_11 . CDS 572535 572557 . - 0 ID=Physo130483;Parent=Physo130483;rank=5 scaffold_11 . exon 572535 572557 . - . ID=Physo130483.5;Parent=Physo130483;constitutive=1;ensembl_phase=1;rank=5 scaffold_11 . CDS 572721 572759 . - 0 ID=Physo130483;Parent=Physo130483;rank=4 scaffold_11 . exon 572721 572759 . - . ID=Physo130483.4;Parent=Physo130483;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 572821 572856 . - 0 ID=Physo130483;Parent=Physo130483;rank=3 scaffold_11 . exon 572821 572856 . - . ID=Physo130483.3;Parent=Physo130483;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 572939 572966 . - 0 ID=Physo130483;Parent=Physo130483;rank=2 scaffold_11 . exon 572939 572966 . - . ID=Physo130483.2;Parent=Physo130483;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 573032 573145 . - 0 ID=Physo130483;Parent=Physo130483;rank=1 scaffold_11 . exon 573032 573145 . - . ID=Physo130483.1;Parent=Physo130483;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 573266 574620 . + . ID=Physo130484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110153;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 573266 574620 . + . ID=Physo130484;Parent=Physo130484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 573266 573340 . + 0 ID=Physo130484;Parent=Physo130484;rank=1 scaffold_11 . exon 573266 573340 . + . ID=Physo130484.1;Parent=Physo130484;constitutive=1;rank=1 scaffold_11 . CDS 573363 573403 . + 0 ID=Physo130484;Parent=Physo130484;rank=2 scaffold_11 . exon 573363 573403 . + . ID=Physo130484.2;Parent=Physo130484;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . CDS 573495 573576 . + 0 ID=Physo130484;Parent=Physo130484;rank=3 scaffold_11 . exon 573495 573576 . + . ID=Physo130484.3;Parent=Physo130484;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 573649 574620 . + 0 ID=Physo130484;Parent=Physo130484;rank=4 scaffold_11 . exon 573649 574620 . + . ID=Physo130484.4;Parent=Physo130484;constitutive=1;rank=4 scaffold_11 ensembl protein_coding_gene 575390 576827 . - . ID=Physo130485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110154;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 575390 576827 . - . ID=Physo130485;Parent=Physo130485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 575390 575799 . - 0 ID=Physo130485;Parent=Physo130485;rank=3 scaffold_11 . exon 575390 575799 . - . ID=Physo130485.3;Parent=Physo130485;constitutive=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 575834 576389 . - 0 ID=Physo130485;Parent=Physo130485;rank=2 scaffold_11 . exon 575834 576389 . - . ID=Physo130485.2;Parent=Physo130485;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_11 . CDS 576429 576827 . - 0 ID=Physo130485;Parent=Physo130485;rank=1 scaffold_11 . exon 576429 576827 . - . ID=Physo130485.1;Parent=Physo130485;constitutive=1;rank=1 scaffold_11 . repeat_region 580306 580373 . ? . description=dust scaffold_11 . repeat_region 580307 580371 . ? . description=trf scaffold_11 . repeat_region 585395 585425 . ? . description=trf scaffold_11 . biological_region 586023 586024 0.999 - . logic_name=eponine scaffold_11 . repeat_region 587202 589530 . - . description=GypsyPi-1c_I-int scaffold_11 . biological_region 587248 587253 0.999 + . logic_name=eponine scaffold_11 ensembl pseudogenic_tRNA 585970 586041 . + . ID=EPrPSOG00000000101;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_11 ensembl transcript 585970 586041 . + . ID=EPrPSOT00000000101;Parent=EPrPSOG00000000101;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_11 . exon 585970 586041 . + . ID=EPrPSOE00000000101;Parent=EPrPSOT00000000101;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 581891 582439 . - . ID=Physo130486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110155;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 581891 582439 . - . ID=Physo130486;Parent=Physo130486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 581891 582439 . - 0 ID=Physo130486;Parent=Physo130486;rank=1 scaffold_11 . exon 581891 582439 . - . ID=Physo130486.1;Parent=Physo130486;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 586055 593252 . - . ID=Physo130487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110156;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 586055 593252 . - . ID=Physo130487;Parent=Physo130487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 586055 587818 . - 0 ID=Physo130487;Parent=Physo130487;rank=12 scaffold_11 . exon 586055 587818 . - . ID=Physo130487.12;Parent=Physo130487;constitutive=1;rank=12 scaffold_11 . CDS 587899 588276 . - 0 ID=Physo130487;Parent=Physo130487;rank=11 scaffold_11 . CDS 588296 588466 . - 0 ID=Physo130487;Parent=Physo130487;rank=10 scaffold_11 . CDS 588491 588790 . - 0 ID=Physo130487;Parent=Physo130487;rank=9 scaffold_11 . CDS 588812 589700 . - 0 ID=Physo130487;Parent=Physo130487;rank=8 scaffold_11 . CDS 589873 590021 . - 0 ID=Physo130487;Parent=Physo130487;rank=7 scaffold_11 . CDS 590076 590436 . - 0 ID=Physo130487;Parent=Physo130487;rank=6 scaffold_11 . CDS 590602 590827 . - 0 ID=Physo130487;Parent=Physo130487;rank=5 scaffold_11 . CDS 591157 591450 . - 0 ID=Physo130487;Parent=Physo130487;rank=4 scaffold_11 . CDS 591500 591866 . - 0 ID=Physo130487;Parent=Physo130487;rank=3 scaffold_11 . CDS 591913 592050 . - 0 ID=Physo130487;Parent=Physo130487;rank=2 scaffold_11 . CDS 592443 593252 . - 0 ID=Physo130487;Parent=Physo130487;rank=1 scaffold_11 . exon 587899 588276 . - . ID=Physo130487.11;Parent=Physo130487;constitutive=1;rank=11 scaffold_11 . exon 588296 588466 . - . ID=Physo130487.10;Parent=Physo130487;constitutive=1;rank=10 scaffold_11 . exon 588491 588790 . - . ID=Physo130487.9;Parent=Physo130487;constitutive=1;rank=9 scaffold_11 . exon 588812 589700 . - . ID=Physo130487.8;Parent=Physo130487;constitutive=1;ensembl_phase=2;rank=8 scaffold_11 . exon 589873 590021 . - . ID=Physo130487.7;Parent=Physo130487;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_11 . exon 590076 590436 . - . ID=Physo130487.6;Parent=Physo130487;constitutive=1;ensembl_phase=2;rank=6 scaffold_11 . exon 590602 590827 . - . ID=Physo130487.5;Parent=Physo130487;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_11 . exon 591157 591450 . - . ID=Physo130487.4;Parent=Physo130487;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_11 . exon 591500 591866 . - . ID=Physo130487.3;Parent=Physo130487;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . exon 591913 592050 . - . ID=Physo130487.2;Parent=Physo130487;constitutive=1;rank=2 scaffold_11 . exon 592443 593252 . - . ID=Physo130487.1;Parent=Physo130487;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 595958 597648 . + . ID=Physo130488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110157;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 595958 597648 . + . ID=Physo130488;Parent=Physo130488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 595958 596498 . + 0 ID=Physo130488;Parent=Physo130488;rank=1 scaffold_11 . exon 595958 596498 . + . ID=Physo130488.1;Parent=Physo130488;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 596534 597648 . + 0 ID=Physo130488;Parent=Physo130488;rank=2 scaffold_11 . exon 596534 597648 . + . ID=Physo130488.2;Parent=Physo130488;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . repeat_region 597594 597634 . ? . description=trf scaffold_11 . repeat_region 597685 600619 . - . description=GypsyPi-1c_I-int scaffold_11 . biological_region 600668 600670 0.999 - . logic_name=eponine scaffold_11 . repeat_region 600934 601321 . ? . description=trf scaffold_11 . repeat_region 601448 601663 . - . description=GypsyPi-1c_I-int scaffold_11 . repeat_region 603588 603668 . ? . description=trf scaffold_11 . repeat_region 603900 603923 . ? . description=dust scaffold_11 . repeat_region 604029 604310 . ? . description=trf scaffold_11 . repeat_region 604252 604353 . ? . description=trf scaffold_11 . repeat_region 604763 604770 . ? . description=dust scaffold_11 . repeat_region 605369 605376 . ? . description=dust scaffold_11 . repeat_region 605914 605945 . ? . description=trf scaffold_11 . repeat_region 606457 606513 . ? . description=trf scaffold_11 . biological_region 606875 606878 0.999 + . logic_name=eponine scaffold_11 ensembl pseudogenic_tRNA 606527 606599 . + . ID=EPrPSOG00000000282;biotype=tRNA_pseudogene;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_11 ensembl transcript 606527 606599 . + . ID=EPrPSOT00000000282;Parent=EPrPSOG00000000282;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_11 . exon 606527 606599 . + . ID=EPrPSOE00000000282;Parent=EPrPSOT00000000282;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 599108 599806 . - . ID=Physo108487;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110018;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 599108 599806 . - . ID=Physo108487;Parent=Physo108487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 599108 599806 . - 0 ID=Physo108487;Parent=Physo108487;rank=1 scaffold_11 . exon 599108 599806 . - . ID=Physo108487.1;Parent=Physo108487;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 599984 602149 . - . ID=Physo130490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110159;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 599984 602149 . - . ID=Physo130490;Parent=Physo130490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 599984 600782 . - 0 ID=Physo130490;Parent=Physo130490;rank=3 scaffold_11 . exon 599984 600782 . - . ID=Physo130490.3;Parent=Physo130490;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 600802 601449 . - 0 ID=Physo130490;Parent=Physo130490;rank=2 scaffold_11 . exon 600802 601449 . - . ID=Physo130490.2;Parent=Physo130490;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 601635 602149 . - 0 ID=Physo130490;Parent=Physo130490;rank=1 scaffold_11 . exon 601635 602149 . - . ID=Physo130490.1;Parent=Physo130490;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 607314 608944 . - . ID=Physo130491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110160;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 607314 608944 . - . ID=Physo130491;Parent=Physo130491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 607314 607987 . - 0 ID=Physo130491;Parent=Physo130491;rank=2 scaffold_11 . exon 607314 607987 . - . ID=Physo130491.2;Parent=Physo130491;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 608023 608944 . - 0 ID=Physo130491;Parent=Physo130491;rank=1 scaffold_11 . exon 608023 608944 . - . ID=Physo130491.1;Parent=Physo130491;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 609416 611041 . - . ID=Physo130492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110161;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 609416 611041 . - . ID=Physo130492;Parent=Physo130492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 609416 611041 . - 0 ID=Physo130492;Parent=Physo130492;rank=1 scaffold_11 . exon 609416 611041 . - . ID=Physo130492.1;Parent=Physo130492;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 611980 613875 . + . ID=Physo130493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110162;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 611980 613875 . + . ID=Physo130493;Parent=Physo130493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 611980 613875 . + . ID=Physo130493.1;Parent=Physo130493;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 612007 613875 . + 0 ID=Physo130493;Parent=Physo130493;rank=1 scaffold_11 ensembl protein_coding_gene 614106 615890 . + . ID=Physo130494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110163;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 614106 615890 . + . ID=Physo130494;Parent=Physo130494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 614106 615890 . + 0 ID=Physo130494;Parent=Physo130494;rank=1 scaffold_11 . exon 614106 615890 . + . ID=Physo130494.1;Parent=Physo130494;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 616686 617642 . + . ID=Physo130495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110164;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 616686 617642 . + . ID=Physo130495;Parent=Physo130495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 616686 617522 . + 0 ID=Physo130495;Parent=Physo130495;rank=1 scaffold_11 . exon 616686 617642 . + . ID=Physo130495.1;Parent=Physo130495;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_11 . biological_region 618359 618361 0.999 + . logic_name=eponine scaffold_11 . biological_region 619083 619086 0.999 + . logic_name=eponine scaffold_11 . biological_region 619211 619211 0.999 + . logic_name=eponine scaffold_11 . repeat_region 624536 624596 . ? . description=dust scaffold_11 . biological_region 624813 624818 0.999 - . logic_name=eponine scaffold_11 . biological_region 624820 624820 0.999 + . logic_name=eponine scaffold_11 . repeat_region 627087 627107 . ? . description=trf scaffold_11 ensembl protein_coding_gene 618833 620449 . + . ID=Physo130496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110165;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 618833 620449 . + . ID=Physo130496;Parent=Physo130496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 618833 619574 . + 0 ID=Physo130496;Parent=Physo130496;rank=1 scaffold_11 . exon 618833 619574 . + . ID=Physo130496.1;Parent=Physo130496;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 619662 620449 . + 0 ID=Physo130496;Parent=Physo130496;rank=2 scaffold_11 . exon 619662 620449 . + . ID=Physo130496.2;Parent=Physo130496;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 ensembl protein_coding_gene 624276 625923 . - . ID=Physo130497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110166;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 624276 625923 . - . ID=Physo130497;Parent=Physo130497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 624276 624558 . - 0 ID=Physo130497;Parent=Physo130497;rank=5 scaffold_11 . exon 624276 624558 . - . ID=Physo130497.5;Parent=Physo130497;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 624578 624825 . - 0 ID=Physo130497;Parent=Physo130497;rank=4 scaffold_11 . exon 624578 624825 . - . ID=Physo130497.4;Parent=Physo130497;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_11 . CDS 624862 625011 . - 0 ID=Physo130497;Parent=Physo130497;rank=3 scaffold_11 . exon 624862 625011 . - . ID=Physo130497.3;Parent=Physo130497;constitutive=1;rank=3 scaffold_11 . CDS 625424 625609 . - 0 ID=Physo130497;Parent=Physo130497;rank=2 scaffold_11 . exon 625424 625609 . - . ID=Physo130497.2;Parent=Physo130497;constitutive=1;rank=2 scaffold_11 . CDS 625768 625923 . - 0 ID=Physo130497;Parent=Physo130497;rank=1 scaffold_11 . exon 625768 625923 . - . ID=Physo130497.1;Parent=Physo130497;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 626689 627338 . - . ID=Physo130498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110167;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 626689 627338 . - . ID=Physo130498;Parent=Physo130498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 626689 626844 . - 0 ID=Physo130498;Parent=Physo130498;rank=3 scaffold_11 . exon 626689 626844 . - . ID=Physo130498.3;Parent=Physo130498;constitutive=1;rank=3 scaffold_11 . CDS 626904 627150 . - 0 ID=Physo130498;Parent=Physo130498;rank=2 scaffold_11 . exon 626904 627150 . - . ID=Physo130498.2;Parent=Physo130498;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 627331 627338 . - 0 ID=Physo130498;Parent=Physo130498;rank=1 scaffold_11 . exon 627331 627338 . - . ID=Physo130498.1;Parent=Physo130498;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 627614 629233 . + . ID=Physo130499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110168;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 627614 629233 . + . ID=Physo130499;Parent=Physo130499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 627614 629233 . + 0 ID=Physo130499;Parent=Physo130499;rank=1 scaffold_11 . exon 627614 629233 . + . ID=Physo130499.1;Parent=Physo130499;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 629548 630733 . - . ID=Physo130500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110169;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 629548 630733 . - . ID=Physo130500;Parent=Physo130500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 629548 630312 . - 0 ID=Physo130500;Parent=Physo130500;rank=2 scaffold_11 . exon 629548 630312 . - . ID=Physo130500.2;Parent=Physo130500;constitutive=1;rank=2 scaffold_11 . CDS 630389 630733 . - 0 ID=Physo130500;Parent=Physo130500;rank=1 scaffold_11 . exon 630389 630733 . - . ID=Physo130500.1;Parent=Physo130500;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 631531 632364 . + . ID=Physo130501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110170;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 631531 632364 . + . ID=Physo130501;Parent=Physo130501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 631531 631789 . + 0 ID=Physo130501;Parent=Physo130501;rank=1 scaffold_11 . exon 631531 631789 . + . ID=Physo130501.1;Parent=Physo130501;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 632009 632364 . + 0 ID=Physo130501;Parent=Physo130501;rank=2 scaffold_11 . exon 632009 632364 . + . ID=Physo130501.2;Parent=Physo130501;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . repeat_region 637548 637590 . ? . description=trf scaffold_11 . biological_region 643004 643008 0.999 + . logic_name=eponine scaffold_11 . biological_region 643055 643060 0.999 - . logic_name=eponine scaffold_11 . repeat_region 644905 644926 . ? . description=trf scaffold_11 . repeat_region 644924 644947 . ? . description=trf scaffold_11 . biological_region 645589 645594 0.999 + . logic_name=eponine scaffold_11 . biological_region 645641 645645 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 640974 641663 . + . ID=Physo112963;biotype=protein_coding;external_name=estExt_Genewise1.C_110139;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 640974 641663 . + . ID=Physo112963;Parent=Physo112963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 640974 641663 . + . ID=Physo112963.1;Parent=Physo112963;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 641046 641663 . + 0 ID=Physo112963;Parent=Physo112963;rank=1 scaffold_11 ensembl protein_coding_gene 637242 638888 . + . ID=Physo130502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110171;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 637242 638888 . + . ID=Physo130502;Parent=Physo130502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 637242 638888 . + 0 ID=Physo130502;Parent=Physo130502;rank=1 scaffold_11 . exon 637242 638888 . + . ID=Physo130502.1;Parent=Physo130502;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 641923 643611 . - . ID=Physo130504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110173;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 641923 643611 . - . ID=Physo130504;Parent=Physo130504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 641923 643611 . - 0 ID=Physo130504;Parent=Physo130504;rank=1 scaffold_11 . exon 641923 643611 . - . ID=Physo130504.1;Parent=Physo130504;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 645262 646625 . + . ID=Physo130505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110174;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 645262 646625 . + . ID=Physo130505;Parent=Physo130505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 645262 646529 . + 0 ID=Physo130505;Parent=Physo130505;rank=1 scaffold_11 . exon 645262 646529 . + . ID=Physo130505.1;Parent=Physo130505;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 646583 646625 . + 0 ID=Physo130505;Parent=Physo130505;rank=2 scaffold_11 . exon 646583 646625 . + . ID=Physo130505.2;Parent=Physo130505;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 ensembl protein_coding_gene 646836 648308 . - . ID=Physo130506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110175;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 646836 648308 . - . ID=Physo130506;Parent=Physo130506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 646836 648308 . - 0 ID=Physo130506;Parent=Physo130506;rank=1 scaffold_11 . exon 646836 648308 . - . ID=Physo130506.1;Parent=Physo130506;constitutive=1;rank=1 scaffold_11 . repeat_region 654805 654824 . ? . description=dust scaffold_11 ensembl protein_coding_gene 649276 651202 . + . ID=Physo130507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110176;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 649276 651202 . + . ID=Physo130507;Parent=Physo130507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 649276 649894 . + 0 ID=Physo130507;Parent=Physo130507;rank=1 scaffold_11 . exon 649276 649894 . + . ID=Physo130507.1;Parent=Physo130507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 650087 650316 . + 0 ID=Physo130507;Parent=Physo130507;rank=2 scaffold_11 . exon 650087 650316 . + . ID=Physo130507.2;Parent=Physo130507;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 650390 651202 . + 0 ID=Physo130507;Parent=Physo130507;rank=3 scaffold_11 . exon 650390 651202 . + . ID=Physo130507.3;Parent=Physo130507;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 655755 656915 . + . ID=Physo130508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110177;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 655755 656915 . + . ID=Physo130508;Parent=Physo130508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 655755 656915 . + 0 ID=Physo130508;Parent=Physo130508;rank=1 scaffold_11 . exon 655755 656915 . + . ID=Physo130508.1;Parent=Physo130508;constitutive=1;rank=1 scaffold_11 . biological_region 658196 658196 0.999 + . logic_name=eponine scaffold_11 . biological_region 658250 658251 0.999 - . logic_name=eponine scaffold_11 . biological_region 658362 658365 0.999 - . logic_name=eponine scaffold_11 . biological_region 658415 658420 0.999 - . logic_name=eponine scaffold_11 . biological_region 658418 658421 0.999 + . logic_name=eponine scaffold_11 . biological_region 658771 658774 0.999 + . logic_name=eponine scaffold_11 . biological_region 658798 658805 0.999 + . logic_name=eponine scaffold_11 . biological_region 661186 661188 0.999 - . logic_name=eponine scaffold_11 . biological_region 661888 661888 0.999 + . logic_name=eponine scaffold_11 . biological_region 665335 665342 0.999 + . logic_name=eponine scaffold_11 ensembl protein_coding_gene 658902 660270 . + . ID=Physo112973;biotype=protein_coding;external_name=estExt_Genewise1.C_110149;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 658902 660270 . + . ID=Physo112973;Parent=Physo112973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 658902 658974 . + . ID=Physo112973.1;Parent=Physo112973;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 658905 658974 . + 0 ID=Physo112973;Parent=Physo112973;rank=1 scaffold_11 . CDS 659078 659299 . + 0 ID=Physo112973;Parent=Physo112973;rank=2 scaffold_11 . exon 659078 659299 . + . ID=Physo112973.2;Parent=Physo112973;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 659373 659724 . + 0 ID=Physo112973;Parent=Physo112973;rank=3 scaffold_11 . exon 659373 659724 . + . ID=Physo112973.3;Parent=Physo112973;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 659794 659872 . + 0 ID=Physo112973;Parent=Physo112973;rank=4 scaffold_11 . exon 659794 659872 . + . ID=Physo112973.4;Parent=Physo112973;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 659935 660027 . + 0 ID=Physo112973;Parent=Physo112973;rank=5 scaffold_11 . exon 659935 660027 . + . ID=Physo112973.5;Parent=Physo112973;constitutive=1;rank=5 scaffold_11 . CDS 660091 660270 . + 0 ID=Physo112973;Parent=Physo112973;rank=6 scaffold_11 . exon 660091 660270 . + . ID=Physo112973.6;Parent=Physo112973;constitutive=1;rank=6 scaffold_11 ensembl protein_coding_gene 657243 658565 . - . ID=Physo130509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110178;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 657243 658565 . - . ID=Physo130509;Parent=Physo130509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 657243 658565 . - . ID=Physo130509.1;Parent=Physo130509;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 657803 658438 . - 0 ID=Physo130509;Parent=Physo130509;rank=1 scaffold_11 ensembl protein_coding_gene 660487 661290 . - . ID=Physo156164;biotype=protein_coding;external_name=C_scaffold_11000059;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 660487 661290 . - . ID=Physo156164;Parent=Physo156164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 660487 660563 . - 0 ID=Physo156164;Parent=Physo156164;rank=2 scaffold_11 . exon 660487 660563 . - . ID=Physo156164.2;Parent=Physo156164;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 660603 661290 . - 0 ID=Physo156164;Parent=Physo156164;rank=1 scaffold_11 . exon 660603 661290 . - . ID=Physo156164.1;Parent=Physo156164;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 662279 665484 . - . ID=Physo156165;biotype=protein_coding;external_name=C_scaffold_11000060;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 662279 665484 . - . ID=Physo156165;Parent=Physo156165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 662279 662758 . - 0 ID=Physo156165;Parent=Physo156165;rank=7 scaffold_11 . exon 662279 662758 . - . ID=Physo156165.7;Parent=Physo156165;constitutive=1;rank=7 scaffold_11 . CDS 662795 663445 . - 0 ID=Physo156165;Parent=Physo156165;rank=6 scaffold_11 . exon 662795 663445 . - . ID=Physo156165.6;Parent=Physo156165;constitutive=1;rank=6 scaffold_11 . CDS 663509 663697 . - 0 ID=Physo156165;Parent=Physo156165;rank=5 scaffold_11 . exon 663509 663697 . - . ID=Physo156165.5;Parent=Physo156165;constitutive=1;rank=5 scaffold_11 . CDS 663780 664028 . - 0 ID=Physo156165;Parent=Physo156165;rank=4 scaffold_11 . exon 663780 664028 . - . ID=Physo156165.4;Parent=Physo156165;constitutive=1;rank=4 scaffold_11 . CDS 664215 664811 . - 0 ID=Physo156165;Parent=Physo156165;rank=3 scaffold_11 . exon 664215 664811 . - . ID=Physo156165.3;Parent=Physo156165;constitutive=1;rank=3 scaffold_11 . CDS 664881 665060 . - 0 ID=Physo156165;Parent=Physo156165;rank=2 scaffold_11 . exon 664881 665060 . - . ID=Physo156165.2;Parent=Physo156165;constitutive=1;rank=2 scaffold_11 . CDS 665137 665484 . - 0 ID=Physo156165;Parent=Physo156165;rank=1 scaffold_11 . exon 665137 665484 . - . ID=Physo156165.1;Parent=Physo156165;constitutive=1;rank=1 scaffold_11 . repeat_region 673466 673508 . ? . description=trf scaffold_11 ensembl protein_coding_gene 667220 668865 . + . ID=Physo130513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110182;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 667220 668865 . + . ID=Physo130513;Parent=Physo130513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 667220 668865 . + . ID=Physo130513.1;Parent=Physo130513;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 667339 668865 . + 0 ID=Physo130513;Parent=Physo130513;rank=1 scaffold_11 ensembl protein_coding_gene 669079 673139 . - . ID=Physo130514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110183;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 669079 673139 . - . ID=Physo130514;Parent=Physo130514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 669079 670706 . - . ID=Physo130514.9;Parent=Physo130514;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_11 . CDS 669195 670706 . - 0 ID=Physo130514;Parent=Physo130514;rank=9 scaffold_11 . CDS 670814 670905 . - 0 ID=Physo130514;Parent=Physo130514;rank=8 scaffold_11 . exon 670814 670905 . - . ID=Physo130514.8;Parent=Physo130514;constitutive=1;ensembl_phase=1;rank=8 scaffold_11 . CDS 670965 670969 . - 0 ID=Physo130514;Parent=Physo130514;rank=7 scaffold_11 . exon 670965 670969 . - . ID=Physo130514.7;Parent=Physo130514;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_11 . CDS 671204 671796 . - 0 ID=Physo130514;Parent=Physo130514;rank=6 scaffold_11 . exon 671204 671796 . - . ID=Physo130514.6;Parent=Physo130514;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_11 . CDS 671862 672251 . - 0 ID=Physo130514;Parent=Physo130514;rank=5 scaffold_11 . exon 671862 672251 . - . ID=Physo130514.5;Parent=Physo130514;constitutive=1;rank=5 scaffold_11 . CDS 672327 672372 . - 0 ID=Physo130514;Parent=Physo130514;rank=4 scaffold_11 . exon 672327 672372 . - . ID=Physo130514.4;Parent=Physo130514;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 672555 672685 . - 0 ID=Physo130514;Parent=Physo130514;rank=3 scaffold_11 . exon 672555 672685 . - . ID=Physo130514.3;Parent=Physo130514;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 672758 672814 . - 0 ID=Physo130514;Parent=Physo130514;rank=2 scaffold_11 . exon 672758 672814 . - . ID=Physo130514.2;Parent=Physo130514;constitutive=1;rank=2 scaffold_11 . CDS 672951 673139 . - 0 ID=Physo130514;Parent=Physo130514;rank=1 scaffold_11 . exon 672951 673139 . - . ID=Physo130514.1;Parent=Physo130514;constitutive=1;rank=1 scaffold_11 . repeat_region 681513 681522 . ? . description=dust scaffold_11 . repeat_region 682577 682605 . ? . description=dust scaffold_11 . biological_region 682833 682833 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 681818 683737 . + . ID=Physo130515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110184;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 681818 683737 . + . ID=Physo130515;Parent=Physo130515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 681818 682056 . + 0 ID=Physo130515;Parent=Physo130515;rank=1 scaffold_11 . exon 681818 682056 . + . ID=Physo130515.1;Parent=Physo130515;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 682363 682518 . + 0 ID=Physo130515;Parent=Physo130515;rank=2 scaffold_11 . exon 682363 682518 . + . ID=Physo130515.2;Parent=Physo130515;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . CDS 682613 683311 . + 0 ID=Physo130515;Parent=Physo130515;rank=3 scaffold_11 . exon 682613 683311 . + . ID=Physo130515.3;Parent=Physo130515;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . CDS 683491 683737 . + 0 ID=Physo130515;Parent=Physo130515;rank=4 scaffold_11 . exon 683491 683737 . + . ID=Physo130515.4;Parent=Physo130515;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . repeat_region 692366 692723 . ? . description=trf scaffold_11 ensembl pseudogenic_tRNA 690970 691042 . - . ID=EPrPSOG00000000241;biotype=tRNA_pseudogene;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_11 ensembl transcript 690970 691042 . - . ID=EPrPSOT00000000241;Parent=EPrPSOG00000000241;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_11 . exon 690970 691042 . - . ID=EPrPSOE00000000241;Parent=EPrPSOT00000000241;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 687767 689360 . + . ID=Physo130516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110185;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 687767 689360 . + . ID=Physo130516;Parent=Physo130516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 687767 688217 . + 0 ID=Physo130516;Parent=Physo130516;rank=1 scaffold_11 . exon 687767 688217 . + . ID=Physo130516.1;Parent=Physo130516;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 688301 688447 . + 0 ID=Physo130516;Parent=Physo130516;rank=2 scaffold_11 . exon 688301 688447 . + . ID=Physo130516.2;Parent=Physo130516;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 688755 689159 . + 0 ID=Physo130516;Parent=Physo130516;rank=3 scaffold_11 . exon 688755 689159 . + . ID=Physo130516.3;Parent=Physo130516;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_11 . CDS 689353 689360 . + 0 ID=Physo130516;Parent=Physo130516;rank=4 scaffold_11 . exon 689353 689360 . + . ID=Physo130516.4;Parent=Physo130516;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . repeat_region 700114 700129 . ? . description=dust scaffold_11 . repeat_region 701152 701626 . ? . description=dust scaffold_11 . biological_region 704227 704227 0.999 + . logic_name=eponine scaffold_11 . repeat_region 705373 705422 . ? . description=dust scaffold_11 ensembl protein_coding_gene 701679 702816 . + . ID=Physo130517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110186;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 701679 702816 . + . ID=Physo130517;Parent=Physo130517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 701679 702183 . + 0 ID=Physo130517;Parent=Physo130517;rank=1 scaffold_11 . exon 701679 702183 . + . ID=Physo130517.1;Parent=Physo130517;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 702236 702816 . + 0 ID=Physo130517;Parent=Physo130517;rank=2 scaffold_11 . exon 702236 702816 . + . ID=Physo130517.2;Parent=Physo130517;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 ensembl protein_coding_gene 704148 707994 . - . ID=Physo130518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110187;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 704148 707994 . - . ID=Physo130518;Parent=Physo130518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 704148 704598 . - 0 ID=Physo130518;Parent=Physo130518;rank=5 scaffold_11 . exon 704148 704598 . - . ID=Physo130518.5;Parent=Physo130518;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 704666 704779 . - 0 ID=Physo130518;Parent=Physo130518;rank=4 scaffold_11 . exon 704666 704779 . - . ID=Physo130518.4;Parent=Physo130518;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_11 . CDS 705056 705285 . - 0 ID=Physo130518;Parent=Physo130518;rank=3 scaffold_11 . exon 705056 705285 . - . ID=Physo130518.3;Parent=Physo130518;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 705470 707323 . - 0 ID=Physo130518;Parent=Physo130518;rank=2 scaffold_11 . exon 705470 707323 . - . ID=Physo130518.2;Parent=Physo130518;constitutive=1;rank=2 scaffold_11 . CDS 707356 707994 . - 0 ID=Physo130518;Parent=Physo130518;rank=1 scaffold_11 . repeat_region 707282 707315 . ? . description=trf scaffold_11 . repeat_region 709125 709245 . ? . description=trf scaffold_11 . repeat_region 711914 711964 . ? . description=trf scaffold_11 . exon 707356 707994 . - . ID=Physo130518.1;Parent=Physo130518;constitutive=1;rank=1 scaffold_11 . repeat_region 716973 717022 . ? . description=dust scaffold_11 . biological_region 717855 717856 0.999 - . logic_name=eponine scaffold_11 . repeat_region 721481 731150 . ? . description=dust scaffold_11 . repeat_region 736719 738918 . - . description=GypsyPi-1c_I-int scaffold_11 ensembl protein_coding_gene 736241 739287 . - . ID=Physo130519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110188;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 736241 739287 . - . ID=Physo130519;Parent=Physo130519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 736241 736377 . - 0 ID=Physo130519;Parent=Physo130519;rank=6 scaffold_11 . exon 736241 736377 . - . ID=Physo130519.6;Parent=Physo130519;constitutive=1;ensembl_phase=1;rank=6 scaffold_11 . CDS 736453 736609 . - 0 ID=Physo130519;Parent=Physo130519;rank=5 scaffold_11 . exon 736453 736609 . - . ID=Physo130519.5;Parent=Physo130519;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_11 . CDS 736725 737057 . - 0 ID=Physo130519;Parent=Physo130519;rank=4 scaffold_11 . exon 736725 737057 . - . ID=Physo130519.4;Parent=Physo130519;constitutive=1;rank=4 scaffold_11 . CDS 737127 737586 . - 0 ID=Physo130519;Parent=Physo130519;rank=3 scaffold_11 . CDS 737716 738960 . - 0 ID=Physo130519;Parent=Physo130519;rank=2 scaffold_11 . CDS 738998 739287 . - 0 ID=Physo130519;Parent=Physo130519;rank=1 scaffold_11 . biological_region 737400 737400 0.999 + . logic_name=eponine scaffold_11 . biological_region 739407 739409 0.999 - . logic_name=eponine scaffold_11 . repeat_region 739452 739501 . ? . description=dust scaffold_11 . repeat_region 744544 744551 . ? . description=dust scaffold_11 . exon 737127 737586 . - . ID=Physo130519.3;Parent=Physo130519;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . exon 737716 738960 . - . ID=Physo130519.2;Parent=Physo130519;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_11 . exon 738998 739287 . - . ID=Physo130519.1;Parent=Physo130519;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . repeat_region 751905 751927 . ? . description=trf scaffold_11 ensembl protein_coding_gene 749581 750759 . - . ID=Physo108488;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110019;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 749581 750759 . - . ID=Physo108488;Parent=Physo108488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 749581 750485 . - . ID=Physo108488.2;Parent=Physo108488;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_11 . CDS 749789 750484 . - 0 ID=Physo108488;Parent=Physo108488;rank=1 scaffold_11 . exon 750719 750759 . - . ID=Physo108488.1;Parent=Physo108488;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 ensembl protein_coding_gene 748445 749470 . + . ID=Physo130520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110189;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 748445 749470 . + . ID=Physo130520;Parent=Physo130520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 748445 748769 . + 0 ID=Physo130520;Parent=Physo130520;rank=1 scaffold_11 . exon 748445 748769 . + . ID=Physo130520.1;Parent=Physo130520;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 748885 749234 . + 0 ID=Physo130520;Parent=Physo130520;rank=2 scaffold_11 . exon 748885 749470 . + . ID=Physo130520.2;Parent=Physo130520;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_11 ensembl protein_coding_gene 751270 755809 . - . ID=Physo130522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110191;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 751270 755809 . - . ID=Physo130522;Parent=Physo130522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 751270 751555 . - 0 ID=Physo130522;Parent=Physo130522;rank=7 scaffold_11 . exon 751270 751555 . - . ID=Physo130522.7;Parent=Physo130522;constitutive=1;ensembl_phase=2;rank=7 scaffold_11 . CDS 751630 753353 . - 0 ID=Physo130522;Parent=Physo130522;rank=6 scaffold_11 . exon 751630 753353 . - . ID=Physo130522.6;Parent=Physo130522;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_11 . CDS 753450 753507 . - 0 ID=Physo130522;Parent=Physo130522;rank=5 scaffold_11 . exon 753450 753507 . - . ID=Physo130522.5;Parent=Physo130522;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 753704 755068 . - 0 ID=Physo130522;Parent=Physo130522;rank=4 scaffold_11 . exon 753704 755068 . - . ID=Physo130522.4;Parent=Physo130522;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_11 . CDS 755150 755343 . - 0 ID=Physo130522;Parent=Physo130522;rank=3 scaffold_11 . exon 755150 755343 . - . ID=Physo130522.3;Parent=Physo130522;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_11 . CDS 755614 755727 . - 0 ID=Physo130522;Parent=Physo130522;rank=2 scaffold_11 . exon 755614 755727 . - . ID=Physo130522.2;Parent=Physo130522;constitutive=1;rank=2 scaffold_11 . CDS 755798 755809 . - 0 ID=Physo130522;Parent=Physo130522;rank=1 scaffold_11 . exon 755798 755809 . - . ID=Physo130522.1;Parent=Physo130522;constitutive=1;rank=1 scaffold_11 . repeat_region 757510 757522 . ? . description=dust scaffold_11 . biological_region 758457 758461 0.999 + . logic_name=eponine scaffold_11 . biological_region 758514 758520 0.999 - . logic_name=eponine scaffold_11 . biological_region 758535 758539 0.999 - . logic_name=eponine scaffold_11 . biological_region 758571 758576 0.999 - . logic_name=eponine scaffold_11 . biological_region 758572 758575 0.999 + . logic_name=eponine scaffold_11 . biological_region 758669 758672 0.999 + . logic_name=eponine scaffold_11 . biological_region 758702 758710 0.999 + . logic_name=eponine scaffold_11 . repeat_region 758801 758865 . ? . description=dust scaffold_11 . biological_region 759239 759242 0.999 - . logic_name=eponine scaffold_11 . biological_region 759917 759925 0.999 + . logic_name=eponine scaffold_11 . biological_region 759946 759950 0.999 - . logic_name=eponine scaffold_11 . biological_region 759973 759976 0.999 - . logic_name=eponine scaffold_11 . biological_region 759992 759997 0.999 - . logic_name=eponine scaffold_11 . biological_region 762267 762268 0.999 + . logic_name=eponine scaffold_11 . biological_region 762300 762304 0.999 + . logic_name=eponine scaffold_11 . biological_region 762620 762623 0.999 + . logic_name=eponine scaffold_11 . biological_region 762690 762698 0.999 + . logic_name=eponine scaffold_11 . biological_region 763298 763304 0.999 - . logic_name=eponine scaffold_11 . biological_region 763592 763598 0.999 + . logic_name=eponine scaffold_11 . biological_region 763756 763756 0.999 - . logic_name=eponine scaffold_11 . biological_region 763834 763838 0.999 + . logic_name=eponine scaffold_11 . biological_region 764383 764386 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 759515 760176 . + . ID=Physo130523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110192;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 759515 760176 . + . ID=Physo130523;Parent=Physo130523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 759515 760176 . + . ID=Physo130523.1;Parent=Physo130523;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 759517 760176 . + 0 ID=Physo130523;Parent=Physo130523;rank=1 scaffold_11 ensembl protein_coding_gene 763394 764472 . + . ID=Physo130524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110193;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 763394 764472 . + . ID=Physo130524;Parent=Physo130524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 763394 764472 . + . ID=Physo130524.1;Parent=Physo130524;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 763487 764392 . + 0 ID=Physo130524;Parent=Physo130524;rank=1 scaffold_11 . repeat_region 769275 769300 . ? . description=trf scaffold_11 ensembl protein_coding_gene 767643 768721 . - . ID=Physo130525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110194;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 767643 768721 . - . ID=Physo130525;Parent=Physo130525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 767643 768721 . - . ID=Physo130525.1;Parent=Physo130525;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 767723 768628 . - 0 ID=Physo130525;Parent=Physo130525;rank=1 scaffold_11 ensembl protein_coding_gene 770035 770845 . - . ID=Physo130526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110195;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 770035 770845 . - . ID=Physo130526;Parent=Physo130526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 770035 770039 . - 0 ID=Physo130526;Parent=Physo130526;rank=2 scaffold_11 . exon 770035 770039 . - . ID=Physo130526.2;Parent=Physo130526;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 770383 770845 . - 0 ID=Physo130526;Parent=Physo130526;rank=1 scaffold_11 . exon 770383 770845 . - . ID=Physo130526.1;Parent=Physo130526;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . biological_region 777139 777141 0.999 + . logic_name=eponine scaffold_11 . repeat_region 781496 781503 . ? . description=dust scaffold_11 . repeat_region 783312 783320 . ? . description=dust scaffold_11 . repeat_region 784835 784842 . ? . description=dust scaffold_11 . repeat_region 785182 785193 . ? . description=dust scaffold_11 . repeat_region 786506 786513 . ? . description=dust scaffold_11 ensembl protein_coding_gene 776612 777112 . + . ID=Physo108489;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110020;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 776612 777112 . + . ID=Physo108489;Parent=Physo108489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 776612 777112 . + 0 ID=Physo108489;Parent=Physo108489;rank=1 scaffold_11 . exon 776612 777112 . + . ID=Physo108489.1;Parent=Physo108489;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 780454 781481 . + . ID=Physo130528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110197;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 780454 781481 . + . ID=Physo130528;Parent=Physo130528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 780454 781248 . + 0 ID=Physo130528;Parent=Physo130528;rank=1 scaffold_11 . exon 780454 781248 . + . ID=Physo130528.1;Parent=Physo130528;constitutive=1;rank=1 scaffold_11 . CDS 781335 781481 . + 0 ID=Physo130528;Parent=Physo130528;rank=2 scaffold_11 . exon 781335 781481 . + . ID=Physo130528.2;Parent=Physo130528;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 783361 783861 . + . ID=Physo130529;biotype=protein_coding;description=PsAvh67 [Source:UniProtKB/TrEMBL%3BAcc:E0W4R2];external_name=estExt_fgenesh1_pg.C_110198;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 783361 783861 . + . ID=Physo130529;Parent=Physo130529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 783361 783861 . + 0 ID=Physo130529;Parent=Physo130529;rank=1 scaffold_11 . exon 783361 783861 . + . ID=Physo130529.1;Parent=Physo130529;constitutive=1;rank=1 scaffold_11 . repeat_region 790429 790456 . ? . description=trf scaffold_11 ensembl protein_coding_gene 792576 794191 . - . ID=Physo108490;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_110021;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 792576 794191 . - . ID=Physo108490;Parent=Physo108490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 792576 793878 . - 0 ID=Physo108490;Parent=Physo108490;rank=2 scaffold_11 . exon 792576 793878 . - . ID=Physo108490.2;Parent=Physo108490;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 794136 794191 . - 0 ID=Physo108490;Parent=Physo108490;rank=1 scaffold_11 . exon 794136 794191 . - . ID=Physo108490.1;Parent=Physo108490;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 791488 791886 . + . ID=Physo130530;biotype=protein_coding;description=PsAvh51 [Source:UniProtKB/TrEMBL%3BAcc:E0W4R3];external_name=estExt_fgenesh1_pg.C_110199;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 791488 791886 . + . ID=Physo130530;Parent=Physo130530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 791488 791886 . + 0 ID=Physo130530;Parent=Physo130530;rank=1 scaffold_11 . exon 791488 791886 . + . ID=Physo130530.1;Parent=Physo130530;constitutive=1;rank=1 scaffold_11 . biological_region 797311 797314 0.999 - . logic_name=eponine scaffold_11 . biological_region 797371 797372 0.999 - . logic_name=eponine scaffold_11 . biological_region 797414 797416 0.999 + . logic_name=eponine scaffold_11 . biological_region 799006 799007 0.999 - . logic_name=eponine scaffold_11 . biological_region 799346 799349 0.999 - . logic_name=eponine scaffold_11 . biological_region 799402 799406 0.999 + . logic_name=eponine scaffold_11 . biological_region 801673 801676 0.999 - . logic_name=eponine scaffold_11 . repeat_region 803579 803641 . ? . description=dust scaffold_11 . repeat_region 806423 806441 . ? . description=dust scaffold_11 ensembl protein_coding_gene 796671 800171 . + . ID=Physo130532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110201;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 796671 800171 . + . ID=Physo130532;Parent=Physo130532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 796671 796689 . + 0 ID=Physo130532;Parent=Physo130532;rank=1 scaffold_11 . exon 796671 796689 . + . ID=Physo130532.1;Parent=Physo130532;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 796991 797044 . + 0 ID=Physo130532;Parent=Physo130532;rank=2 scaffold_11 . exon 796991 797044 . + . ID=Physo130532.2;Parent=Physo130532;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 797085 797727 . + 0 ID=Physo130532;Parent=Physo130532;rank=3 scaffold_11 . exon 797085 797727 . + . ID=Physo130532.3;Parent=Physo130532;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_11 . CDS 797784 798350 . + 0 ID=Physo130532;Parent=Physo130532;rank=4 scaffold_11 . exon 797784 798350 . + . ID=Physo130532.4;Parent=Physo130532;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_11 . CDS 798444 798513 . + 0 ID=Physo130532;Parent=Physo130532;rank=5 scaffold_11 . exon 798444 798513 . + . ID=Physo130532.5;Parent=Physo130532;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 798876 798970 . + 0 ID=Physo130532;Parent=Physo130532;rank=6 scaffold_11 . exon 798876 798970 . + . ID=Physo130532.6;Parent=Physo130532;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_11 . CDS 799007 799661 . + 0 ID=Physo130532;Parent=Physo130532;rank=7 scaffold_11 . exon 799007 799661 . + . ID=Physo130532.7;Parent=Physo130532;constitutive=1;ensembl_phase=2;rank=7 scaffold_11 . CDS 799841 800068 . + 0 ID=Physo130532;Parent=Physo130532;rank=8 scaffold_11 . exon 799841 800171 . + . ID=Physo130532.8;Parent=Physo130532;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_11 ensembl protein_coding_gene 800397 801816 . - . ID=Physo130533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110202;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 800397 801816 . - . ID=Physo130533;Parent=Physo130533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 800397 800675 . - 0 ID=Physo130533;Parent=Physo130533;rank=3 scaffold_11 . exon 800397 800675 . - . ID=Physo130533.3;Parent=Physo130533;constitutive=1;rank=3 scaffold_11 . CDS 801015 801375 . - 0 ID=Physo130533;Parent=Physo130533;rank=2 scaffold_11 . exon 801015 801375 . - . ID=Physo130533.2;Parent=Physo130533;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 801443 801816 . - 0 ID=Physo130533;Parent=Physo130533;rank=1 scaffold_11 . exon 801443 801816 . - . ID=Physo130533.1;Parent=Physo130533;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 803614 804951 . - . ID=Physo130534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110203;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 803614 804951 . - . ID=Physo130534;Parent=Physo130534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 803614 803998 . - . ID=Physo130534.2;Parent=Physo130534;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_11 . CDS 803846 803998 . - 0 ID=Physo130534;Parent=Physo130534;rank=2 scaffold_11 . CDS 804085 804951 . - 0 ID=Physo130534;Parent=Physo130534;rank=1 scaffold_11 . exon 804085 804951 . - . ID=Physo130534.1;Parent=Physo130534;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 805563 806601 . + . ID=Physo130535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110204;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 805563 806601 . + . ID=Physo130535;Parent=Physo130535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 805563 806360 . + 0 ID=Physo130535;Parent=Physo130535;rank=1 scaffold_11 . exon 805563 806360 . + . ID=Physo130535.1;Parent=Physo130535;constitutive=1;rank=1 scaffold_11 . CDS 806449 806601 . + 0 ID=Physo130535;Parent=Physo130535;rank=2 scaffold_11 . repeat_region 809017 809041 . ? . description=trf scaffold_11 . repeat_region 810170 810200 . ? . description=trf scaffold_11 . repeat_region 813774 813801 . ? . description=trf scaffold_11 . repeat_region 816294 816344 . ? . description=trf scaffold_11 . exon 806449 806601 . + . ID=Physo130535.2;Parent=Physo130535;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 810724 811739 . - . ID=Physo130536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110205;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 810724 811739 . - . ID=Physo130536;Parent=Physo130536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 810724 810861 . - 0 ID=Physo130536;Parent=Physo130536;rank=3 scaffold_11 . exon 810724 810861 . - . ID=Physo130536.3;Parent=Physo130536;constitutive=1;rank=3 scaffold_11 . CDS 810941 811066 . - 0 ID=Physo130536;Parent=Physo130536;rank=2 scaffold_11 . exon 810941 811066 . - . ID=Physo130536.2;Parent=Physo130536;constitutive=1;rank=2 scaffold_11 . CDS 811140 811739 . - 0 ID=Physo130536;Parent=Physo130536;rank=1 scaffold_11 . exon 811140 811739 . - . ID=Physo130536.1;Parent=Physo130536;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 812592 813607 . + . ID=Physo130537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110206;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 812592 813607 . + . ID=Physo130537;Parent=Physo130537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 812592 813191 . + 0 ID=Physo130537;Parent=Physo130537;rank=1 scaffold_11 . exon 812592 813191 . + . ID=Physo130537.1;Parent=Physo130537;constitutive=1;rank=1 scaffold_11 . CDS 813265 813390 . + 0 ID=Physo130537;Parent=Physo130537;rank=2 scaffold_11 . exon 813265 813390 . + . ID=Physo130537.2;Parent=Physo130537;constitutive=1;rank=2 scaffold_11 . CDS 813470 813607 . + 0 ID=Physo130537;Parent=Physo130537;rank=3 scaffold_11 . exon 813470 813607 . + . ID=Physo130537.3;Parent=Physo130537;constitutive=1;rank=3 scaffold_11 ensembl protein_coding_gene 814387 815235 . - . ID=Physo130538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110207;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 814387 815235 . - . ID=Physo130538;Parent=Physo130538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 814387 815235 . - 0 ID=Physo130538;Parent=Physo130538;rank=1 scaffold_11 . exon 814387 815235 . - . ID=Physo130538.1;Parent=Physo130538;constitutive=1;rank=1 scaffold_11 . biological_region 819051 819052 0.999 - . logic_name=eponine scaffold_11 . biological_region 819063 819063 0.999 + . logic_name=eponine scaffold_11 . repeat_region 821867 821926 . ? . description=dust scaffold_11 . biological_region 823387 823388 0.999 + . logic_name=eponine scaffold_11 . biological_region 824954 824957 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 819447 820416 . - . ID=Physo130539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110208;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 819447 820416 . - . ID=Physo130539;Parent=Physo130539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 819447 820141 . - 0 ID=Physo130539;Parent=Physo130539;rank=2 scaffold_11 . exon 819447 820141 . - . ID=Physo130539.2;Parent=Physo130539;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 820200 820416 . - 0 ID=Physo130539;Parent=Physo130539;rank=1 scaffold_11 . exon 820200 820416 . - . ID=Physo130539.1;Parent=Physo130539;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 822206 823483 . - . ID=Physo130540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110209;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 822206 823483 . - . ID=Physo130540;Parent=Physo130540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 822206 822441 . - 0 ID=Physo130540;Parent=Physo130540;rank=4 scaffold_11 . exon 822206 822441 . - . ID=Physo130540.4;Parent=Physo130540;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 822526 823027 . - 0 ID=Physo130540;Parent=Physo130540;rank=3 scaffold_11 . exon 822526 823027 . - . ID=Physo130540.3;Parent=Physo130540;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 823091 823102 . - 0 ID=Physo130540;Parent=Physo130540;rank=2 scaffold_11 . exon 823091 823102 . - . ID=Physo130540.2;Parent=Physo130540;constitutive=1;rank=2 scaffold_11 . CDS 823166 823483 . - 0 ID=Physo130540;Parent=Physo130540;rank=1 scaffold_11 . exon 823166 823483 . - . ID=Physo130540.1;Parent=Physo130540;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 824280 825147 . + . ID=Physo130541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110210;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 824280 825147 . + . ID=Physo130541;Parent=Physo130541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . exon 824280 825147 . + . ID=Physo130541.1;Parent=Physo130541;constitutive=1;ensembl_phase=-1;rank=1 scaffold_11 . CDS 824287 825147 . + 0 ID=Physo130541;Parent=Physo130541;rank=1 scaffold_11 ensembl protein_coding_gene 826341 827063 . + . ID=Physo130542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110211;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 826341 827063 . + . ID=Physo130542;Parent=Physo130542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 826341 827063 . + 0 ID=Physo130542;Parent=Physo130542;rank=1 scaffold_11 . exon 826341 827063 . + . ID=Physo130542.1;Parent=Physo130542;constitutive=1;rank=1 scaffold_11 . repeat_region 834352 834372 . ? . description=trf scaffold_11 . repeat_region 835419 835466 . ? . description=trf scaffold_11 ensembl protein_coding_gene 831849 832634 . + . ID=Physo130545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110214;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 831849 832634 . + . ID=Physo130545;Parent=Physo130545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 831849 832634 . + 0 ID=Physo130545;Parent=Physo130545;rank=1 scaffold_11 . exon 831849 832634 . + . ID=Physo130545.1;Parent=Physo130545;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 832974 833871 . + . ID=Physo130546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110215;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 832974 833871 . + . ID=Physo130546;Parent=Physo130546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 832974 833672 . + 0 ID=Physo130546;Parent=Physo130546;rank=1 scaffold_11 . exon 832974 833672 . + . ID=Physo130546.1;Parent=Physo130546;constitutive=1;rank=1 scaffold_11 . CDS 833695 833871 . + 0 ID=Physo130546;Parent=Physo130546;rank=2 scaffold_11 . exon 833695 833871 . + . ID=Physo130546.2;Parent=Physo130546;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 834337 835224 . + . ID=Physo130547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110216;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 834337 835224 . + . ID=Physo130547;Parent=Physo130547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 834337 835224 . + 0 ID=Physo130547;Parent=Physo130547;rank=1 scaffold_11 . exon 834337 835224 . + . ID=Physo130547.1;Parent=Physo130547;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 828243 830394 . + . ID=Physo156168;biotype=protein_coding;external_name=C_scaffold_11000063;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 828243 830394 . + . ID=Physo156168;Parent=Physo156168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 828243 828762 . + 0 ID=Physo156168;Parent=Physo156168;rank=1 scaffold_11 . exon 828243 828762 . + . ID=Physo156168.1;Parent=Physo156168;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 829943 830394 . + 0 ID=Physo156168;Parent=Physo156168;rank=2 scaffold_11 . exon 829943 830394 . + . ID=Physo156168.2;Parent=Physo156168;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . biological_region 840811 840813 0.999 + . logic_name=eponine scaffold_11 . biological_region 840887 840891 0.999 + . logic_name=eponine scaffold_11 . biological_region 840894 840899 0.999 - . logic_name=eponine scaffold_11 . biological_region 840932 840934 0.999 - . logic_name=eponine scaffold_11 . biological_region 841220 841223 0.999 + . logic_name=eponine scaffold_11 . biological_region 842383 842387 0.999 - . logic_name=eponine scaffold_11 . biological_region 843265 843268 0.999 + . logic_name=eponine scaffold_11 . repeat_region 843757 843767 . ? . description=dust scaffold_11 . biological_region 844254 844254 0.999 + . logic_name=eponine scaffold_11 . biological_region 844306 844310 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 837789 838625 . + . ID=Physo130548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110217;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 837789 838625 . + . ID=Physo130548;Parent=Physo130548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 837789 838625 . + 0 ID=Physo130548;Parent=Physo130548;rank=1 scaffold_11 . exon 837789 838625 . + . ID=Physo130548.1;Parent=Physo130548;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 843834 844604 . + . ID=Physo130551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110220;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 843834 844604 . + . ID=Physo130551;Parent=Physo130551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 843834 843872 . + 0 ID=Physo130551;Parent=Physo130551;rank=1 scaffold_11 . exon 843834 843872 . + . ID=Physo130551.1;Parent=Physo130551;constitutive=1;rank=1 scaffold_11 . CDS 843954 844604 . + 0 ID=Physo130551;Parent=Physo130551;rank=2 scaffold_11 . exon 843954 844604 . + . ID=Physo130551.2;Parent=Physo130551;constitutive=1;rank=2 scaffold_11 ensembl protein_coding_gene 844933 848332 . - . ID=Physo130552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110221;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 844933 848332 . - . ID=Physo130552;Parent=Physo130552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 844933 846021 . - 0 ID=Physo130552;Parent=Physo130552;rank=4 scaffold_11 . exon 844933 846021 . - . ID=Physo130552.4;Parent=Physo130552;constitutive=1;rank=4 scaffold_11 . CDS 846182 846296 . - 0 ID=Physo130552;Parent=Physo130552;rank=3 scaffold_11 . exon 846182 846296 . - . ID=Physo130552.3;Parent=Physo130552;constitutive=1;ensembl_phase=2;rank=3 scaffold_11 . CDS 846602 846858 . - 0 ID=Physo130552;Parent=Physo130552;rank=2 scaffold_11 . CDS 846908 848332 . - 0 ID=Physo130552;Parent=Physo130552;rank=1 scaffold_11 ensembl protein_coding_gene 840029 842678 . + . ID=Physo156171;biotype=protein_coding;external_name=C_scaffold_11000066;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 840029 842678 . + . ID=Physo156171;Parent=Physo156171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 840029 840682 . + 0 ID=Physo156171;Parent=Physo156171;rank=1 scaffold_11 . exon 840029 840682 . + . ID=Physo156171.1;Parent=Physo156171;constitutive=1;rank=1 scaffold_11 . CDS 840725 841393 . + 0 ID=Physo156171;Parent=Physo156171;rank=2 scaffold_11 . exon 840725 841393 . + . ID=Physo156171.2;Parent=Physo156171;constitutive=1;rank=2 scaffold_11 . CDS 842034 842678 . + 0 ID=Physo156171;Parent=Physo156171;rank=3 scaffold_11 . exon 842034 842678 . + . ID=Physo156171.3;Parent=Physo156171;constitutive=1;rank=3 scaffold_11 . exon 846602 846858 . - . ID=Physo130552.2;Parent=Physo130552;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_11 . exon 846908 848332 . - . ID=Physo130552.1;Parent=Physo130552;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 850797 856336 . - . ID=Physo156173;biotype=protein_coding;external_name=C_scaffold_11000068;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 850797 856336 . - . ID=Physo156173;Parent=Physo156173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 850797 851688 . - 0 ID=Physo156173;Parent=Physo156173;rank=5 scaffold_11 . exon 850797 851688 . - . ID=Physo156173.5;Parent=Physo156173;constitutive=1;ensembl_phase=2;rank=5 scaffold_11 . CDS 851818 852284 . - 0 ID=Physo156173;Parent=Physo156173;rank=4 scaffold_11 . exon 851818 852284 . - . ID=Physo156173.4;Parent=Physo156173;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_11 . CDS 852942 854396 . - 0 ID=Physo156173;Parent=Physo156173;rank=3 scaffold_11 . exon 852942 854396 . - . ID=Physo156173.3;Parent=Physo156173;constitutive=1;rank=3 scaffold_11 . CDS 854875 856299 . - 0 ID=Physo156173;Parent=Physo156173;rank=2 scaffold_11 . exon 854875 856299 . - . ID=Physo156173.2;Parent=Physo156173;constitutive=1;rank=2 scaffold_11 . CDS 856334 856336 . - 0 ID=Physo156173;Parent=Physo156173;rank=1 scaffold_11 . repeat_region 856782 856793 . ? . description=dust scaffold_11 . biological_region 857267 857267 0.999 - . logic_name=eponine scaffold_11 . repeat_region 860251 860266 . ? . description=dust scaffold_11 . repeat_region 863072 863224 . ? . description=dust scaffold_11 . repeat_region 863072 863228 . ? . description=trf scaffold_11 ensembl protein_coding_gene 856918 857952 . - . ID=Physo130556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110225;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 856918 857952 . - . ID=Physo130556;Parent=Physo130556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 856918 857397 . - 0 ID=Physo130556;Parent=Physo130556;rank=2 scaffold_11 . exon 856918 857397 . - . ID=Physo130556.2;Parent=Physo130556;constitutive=1;rank=2 scaffold_11 . CDS 857485 857952 . - 0 ID=Physo130556;Parent=Physo130556;rank=1 scaffold_11 . exon 857485 857952 . - . ID=Physo130556.1;Parent=Physo130556;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 860527 861279 . - . ID=Physo130557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110226;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 860527 861279 . - . ID=Physo130557;Parent=Physo130557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 860527 861279 . - 0 ID=Physo130557;Parent=Physo130557;rank=1 scaffold_11 . exon 860527 861279 . - . ID=Physo130557.1;Parent=Physo130557;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 863050 864726 . + . ID=Physo130558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110227;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 863050 864726 . + . ID=Physo130558;Parent=Physo130558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 863050 863215 . + 0 ID=Physo130558;Parent=Physo130558;rank=1 scaffold_11 . exon 863050 863215 . + . ID=Physo130558.1;Parent=Physo130558;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 863477 863507 . + 0 ID=Physo130558;Parent=Physo130558;rank=2 scaffold_11 . exon 863477 863507 . + . ID=Physo130558.2;Parent=Physo130558;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_11 . CDS 863731 863826 . + 0 ID=Physo130558;Parent=Physo130558;rank=3 scaffold_11 . exon 863731 863826 . + . ID=Physo130558.3;Parent=Physo130558;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_11 . CDS 864186 864528 . + 0 ID=Physo130558;Parent=Physo130558;rank=4 scaffold_11 . exon 864186 864528 . + . ID=Physo130558.4;Parent=Physo130558;constitutive=1;ensembl_phase=2;rank=4 scaffold_11 . CDS 864551 864667 . + 0 ID=Physo130558;Parent=Physo130558;rank=5 scaffold_11 . exon 864551 864667 . + . ID=Physo130558.5;Parent=Physo130558;constitutive=1;rank=5 scaffold_11 . CDS 864709 864726 . + 0 ID=Physo130558;Parent=Physo130558;rank=6 scaffold_11 . exon 864709 864726 . + . ID=Physo130558.6;Parent=Physo130558;constitutive=1;rank=6 scaffold_11 . exon 856334 856336 . - . ID=Physo156173.1;Parent=Physo156173;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 868387 872202 . + . ID=Physo130559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110228;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 868387 872202 . + . ID=Physo130559;Parent=Physo130559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 868387 868860 . + 0 ID=Physo130559;Parent=Physo130559;rank=1 scaffold_11 . exon 868387 868860 . + . ID=Physo130559.1;Parent=Physo130559;constitutive=1;rank=1 scaffold_11 . CDS 869041 869151 . + 0 ID=Physo130559;Parent=Physo130559;rank=2 scaffold_11 . exon 869041 869151 . + . ID=Physo130559.2;Parent=Physo130559;constitutive=1;rank=2 scaffold_11 . CDS 869192 870161 . + 0 ID=Physo130559;Parent=Physo130559;rank=3 scaffold_11 . exon 869192 870161 . + . ID=Physo130559.3;Parent=Physo130559;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_11 . CDS 870318 870331 . + 0 ID=Physo130559;Parent=Physo130559;rank=4 scaffold_11 . exon 870318 870331 . + . ID=Physo130559.4;Parent=Physo130559;constitutive=1;ensembl_phase=1;rank=4 scaffold_11 . CDS 870487 872202 . + 0 ID=Physo130559;Parent=Physo130559;rank=5 scaffold_11 . exon 870487 872202 . + . ID=Physo130559.5;Parent=Physo130559;constitutive=1;rank=5 scaffold_11 . biological_region 878153 878160 0.999 + . logic_name=eponine scaffold_11 . biological_region 878270 878276 0.999 - . logic_name=eponine scaffold_11 . biological_region 878827 878830 0.999 + . logic_name=eponine scaffold_11 . repeat_region 879152 879236 . ? . description=trf scaffold_11 . repeat_region 879487 879765 . - . description=GypsyPi-1c_I-int scaffold_11 . repeat_region 880039 882414 . - . description=GypsyPi-1c_I-int scaffold_11 . biological_region 882615 882619 0.999 + . logic_name=eponine scaffold_11 . biological_region 882945 882950 0.999 + . logic_name=eponine scaffold_11 . biological_region 882985 882988 0.999 + . logic_name=eponine scaffold_11 . biological_region 883011 883016 0.999 - . logic_name=eponine scaffold_11 . repeat_region 883093 883343 . ? . description=trf scaffold_11 . biological_region 883554 883559 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 879820 882527 . - . ID=Physo130560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110229;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 879820 882527 . - . ID=Physo130560;Parent=Physo130560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 879820 880092 . - 0 ID=Physo130560;Parent=Physo130560;rank=3 scaffold_11 . exon 879820 880092 . - . ID=Physo130560.3;Parent=Physo130560;constitutive=1;rank=3 scaffold_11 . CDS 880139 881714 . - 0 ID=Physo130560;Parent=Physo130560;rank=2 scaffold_11 . exon 880139 881714 . - . ID=Physo130560.2;Parent=Physo130560;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . CDS 881737 882527 . - 0 ID=Physo130560;Parent=Physo130560;rank=1 scaffold_11 . exon 881737 882527 . - . ID=Physo130560.1;Parent=Physo130560;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 ensembl protein_coding_gene 885871 886257 . - . ID=Physo130561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110230;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 885871 886257 . - . ID=Physo130561;Parent=Physo130561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 885871 886257 . - 0 ID=Physo130561;Parent=Physo130561;rank=1 scaffold_11 . exon 885871 886257 . - . ID=Physo130561.1;Parent=Physo130561;constitutive=1;rank=1 scaffold_11 . repeat_region 894125 894141 . ? . description=dust scaffold_11 ensembl protein_coding_gene 887256 888445 . + . ID=Physo130562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110231;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 887256 888445 . + . ID=Physo130562;Parent=Physo130562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 887256 888356 . + 0 ID=Physo130562;Parent=Physo130562;rank=1 scaffold_11 . exon 887256 888445 . + . ID=Physo130562.1;Parent=Physo130562;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_11 ensembl protein_coding_gene 890861 891869 . + . ID=Physo130563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110232;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 890861 891869 . + . ID=Physo130563;Parent=Physo130563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 890861 891640 . + 0 ID=Physo130563;Parent=Physo130563;rank=1 scaffold_11 . exon 890861 891640 . + . ID=Physo130563.1;Parent=Physo130563;constitutive=1;rank=1 scaffold_11 . CDS 891852 891869 . + 0 ID=Physo130563;Parent=Physo130563;rank=2 scaffold_11 . exon 891852 891869 . + . ID=Physo130563.2;Parent=Physo130563;constitutive=1;rank=2 scaffold_11 . repeat_region 898468 898511 . ? . description=trf scaffold_11 . biological_region 899970 899972 0.999 - . logic_name=eponine scaffold_11 . biological_region 900969 900971 0.999 - . logic_name=eponine scaffold_11 . biological_region 905011 905013 0.999 - . logic_name=eponine scaffold_11 . repeat_region 906753 906790 . ? . description=dust scaffold_11 ensembl protein_coding_gene 913709 913966 . - . ID=Physo113004;biotype=protein_coding;external_name=estExt_Genewise1.C_110180;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 913709 913966 . - . ID=Physo113004;Parent=Physo113004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 913709 913966 . - 0 ID=Physo113004;Parent=Physo113004;rank=1 scaffold_11 . exon 913709 913966 . - . ID=Physo113004.1;Parent=Physo113004;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 911960 912629 . + . ID=Physo130564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110233;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 911960 912629 . + . ID=Physo130564;Parent=Physo130564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 911960 912468 . + 0 ID=Physo130564;Parent=Physo130564;rank=1 scaffold_11 . exon 911960 912468 . + . ID=Physo130564.1;Parent=Physo130564;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_11 . CDS 912614 912629 . + 0 ID=Physo130564;Parent=Physo130564;rank=2 scaffold_11 . exon 912614 912629 . + . ID=Physo130564.2;Parent=Physo130564;constitutive=1;ensembl_phase=2;rank=2 scaffold_11 . repeat_region 924865 924907 . ? . description=trf scaffold_11 . repeat_region 925268 925321 . ? . description=trf scaffold_11 . biological_region 925615 925616 0.999 - . logic_name=eponine scaffold_11 ensembl protein_coding_gene 917256 917819 . - . ID=Physo130565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110234;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 917256 917819 . - . ID=Physo130565;Parent=Physo130565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 917256 917263 . - 0 ID=Physo130565;Parent=Physo130565;rank=2 scaffold_11 . exon 917256 917263 . - . ID=Physo130565.2;Parent=Physo130565;constitutive=1;ensembl_phase=1;rank=2 scaffold_11 . CDS 917288 917819 . - 0 ID=Physo130565;Parent=Physo130565;rank=1 scaffold_11 . exon 917288 917819 . - . ID=Physo130565.1;Parent=Physo130565;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 ensembl protein_coding_gene 919974 920651 . + . ID=Physo130566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110235;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 919974 920651 . + . ID=Physo130566;Parent=Physo130566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 919974 920651 . + 0 ID=Physo130566;Parent=Physo130566;rank=1 scaffold_11 . exon 919974 920651 . + . ID=Physo130566.1;Parent=Physo130566;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 920737 923292 . - . ID=Physo130567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110236;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 920737 923292 . - . ID=Physo130567;Parent=Physo130567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 920737 923292 . - 0 ID=Physo130567;Parent=Physo130567;rank=1 scaffold_11 . exon 920737 923292 . - . ID=Physo130567.1;Parent=Physo130567;constitutive=1;rank=1 scaffold_11 ensembl protein_coding_gene 925534 926583 . + . ID=Physo130568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_110237;logic_name=jgi_physo1_1 scaffold_11 ensembl transcript 925534 926583 . + . ID=Physo130568;Parent=Physo130568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_11 . CDS 925534 925975 . + 0 ID=Physo130568;Parent=Physo130568;rank=1 scaffold_11 . exon 925534 925975 . + . ID=Physo130568.1;Parent=Physo130568;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . CDS 926087 926583 . + 0 ID=Physo130568;Parent=Physo130568;rank=2 scaffold_11 . repeat_region 926936 926946 . ? . description=dust scaffold_11 . repeat_region 928319 928329 . ? . description=dust scaffold_11 . repeat_region 928777 928792 . ? . description=dust scaffold_11 . repeat_region 929444 929451 . ? . description=dust scaffold_11 . repeat_region 932946 932961 . ? . description=dust scaffold_11 . repeat_region 933077 933084 . ? . description=dust scaffold_11 ensembl pseudogenic_tRNA 935740 935821 . + . ID=EPrPSOG00000000022;biotype=tRNA_pseudogene;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_11 ensembl transcript 935740 935821 . + . ID=EPrPSOT00000000022;Parent=EPrPSOG00000000022;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_11 ensembl pseudogenic_tRNA 934993 935074 . + . ID=EPrPSOG00000000186;biotype=tRNA_pseudogene;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_11 ensembl transcript 934993 935074 . + . ID=EPrPSOT00000000186;Parent=EPrPSOG00000000186;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_11 ensembl pseudogenic_tRNA 934246 934327 . + . ID=EPrPSOG00000000217;biotype=tRNA_pseudogene;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_11 ensembl transcript 934246 934327 . + . ID=EPrPSOT00000000217;Parent=EPrPSOG00000000217;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_11 . exon 935740 935821 . + . ID=EPrPSOE00000000022;Parent=EPrPSOT00000000022;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . exon 934993 935074 . + . ID=EPrPSOE00000000186;Parent=EPrPSOT00000000186;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . exon 934246 934327 . + . ID=EPrPSOE00000000217;Parent=EPrPSOT00000000217;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_11 . exon 926087 926583 . + . ID=Physo130568.2;Parent=Physo130568;constitutive=1;ensembl_phase=1;rank=2 ##gff-version 3 ##sequence-region scaffold_13 1 940594 scaffold_13 . biological_region 1616 1622 0.999 - . logic_name=eponine scaffold_13 . repeat_region 2940 2992 . ? . description=trf scaffold_13 . repeat_region 3155 3162 . ? . description=dust scaffold_13 . biological_region 7947 7948 0.999 - . logic_name=eponine scaffold_13 . repeat_region 8756 8786 . ? . description=dust scaffold_13 . repeat_region 8988 8996 . ? . description=dust scaffold_13 . biological_region 9619 9623 0.999 - . logic_name=eponine scaffold_13 . biological_region 9645 9649 0.999 - . logic_name=eponine scaffold_13 . biological_region 9699 9706 0.999 + . logic_name=eponine scaffold_13 ensembl pseudogene 1 2339 . + . ID=Physo130810;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_130001;logic_name=jgi_physo1_1 scaffold_13 ensembl pseudogene 1 2339 . + . ID=Physo130810;Parent=Physo130810;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_13 . exon 1 2339 . + . ID=Physo130810.1;Parent=Physo130810;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 ensembl protein_coding_gene 4546 8600 . + . ID=Physo130811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130002;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 4546 8600 . + . ID=Physo130811;Parent=Physo130811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 4546 5559 . + 0 ID=Physo130811;Parent=Physo130811;rank=1 scaffold_13 . exon 4546 5559 . + . ID=Physo130811.1;Parent=Physo130811;constitutive=1;rank=1 scaffold_13 . CDS 5649 8600 . + 0 ID=Physo130811;Parent=Physo130811;rank=2 scaffold_13 . exon 5649 8600 . + . ID=Physo130811.2;Parent=Physo130811;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 9036 13132 . - . ID=Physo130812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130003;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 9036 13132 . - . ID=Physo130812;Parent=Physo130812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 9036 9294 . - . ID=Physo130812.3;Parent=Physo130812;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_13 . exon 9545 9725 . - . ID=Physo130812.2;Parent=Physo130812;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_13 . CDS 9666 9725 . - 0 ID=Physo130812;Parent=Physo130812;rank=2 scaffold_13 . CDS 9746 13132 . - 0 ID=Physo130812;Parent=Physo130812;rank=1 scaffold_13 . exon 9746 13132 . - . ID=Physo130812.1;Parent=Physo130812;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 14178 18326 . - . ID=Physo130813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130004;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 14178 18326 . - . ID=Physo130813;Parent=Physo130813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 14178 18326 . - . ID=Physo130813.1;Parent=Physo130813;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_13 . CDS 14196 18326 . - 0 ID=Physo130813;Parent=Physo130813;rank=1 scaffold_13 ensembl protein_coding_gene 19509 20634 . - . ID=Physo130814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130005;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 19509 20634 . - . ID=Physo130814;Parent=Physo130814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 19509 19712 . - . ID=Physo130814.5;Parent=Physo130814;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_13 . CDS 19635 19712 . - 0 ID=Physo130814;Parent=Physo130814;rank=5 scaffold_13 . CDS 19777 20023 . - 0 ID=Physo130814;Parent=Physo130814;rank=4 scaffold_13 . exon 19777 20023 . - . ID=Physo130814.4;Parent=Physo130814;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 20108 20178 . - 0 ID=Physo130814;Parent=Physo130814;rank=3 scaffold_13 . CDS 20261 20352 . - 0 ID=Physo130814;Parent=Physo130814;rank=2 scaffold_13 . CDS 20442 20634 . - 0 ID=Physo130814;Parent=Physo130814;rank=1 scaffold_13 . biological_region 20526 20530 0.999 + . logic_name=eponine scaffold_13 . biological_region 20548 20551 0.999 + . logic_name=eponine scaffold_13 . biological_region 20588 20591 0.999 - . logic_name=eponine scaffold_13 . biological_region 21134 21137 0.999 + . logic_name=eponine scaffold_13 . repeat_region 21403 21432 . ? . description=trf scaffold_13 . biological_region 24466 24469 0.999 + . logic_name=eponine scaffold_13 . biological_region 24525 24527 0.999 - . logic_name=eponine scaffold_13 . biological_region 24743 24751 0.999 + . logic_name=eponine scaffold_13 . biological_region 24821 24825 0.999 - . logic_name=eponine scaffold_13 . biological_region 24833 24836 0.999 + . logic_name=eponine scaffold_13 . biological_region 24874 24883 0.999 - . logic_name=eponine scaffold_13 . biological_region 24903 24903 0.999 - . logic_name=eponine scaffold_13 . biological_region 24954 24956 0.999 - . logic_name=eponine scaffold_13 . biological_region 24957 24958 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 20837 21471 . + . ID=Physo108510;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_130001;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 20837 21471 . + . ID=Physo108510;Parent=Physo108510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 20837 21451 . + 0 ID=Physo108510;Parent=Physo108510;rank=1 scaffold_13 . exon 20837 21471 . + . ID=Physo108510.1;Parent=Physo108510;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_13 ensembl protein_coding_gene 24738 25712 . + . ID=Physo108511;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_130002;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 24738 25712 . + . ID=Physo108511;Parent=Physo108511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 24738 25688 . + 0 ID=Physo108511;Parent=Physo108511;rank=1 scaffold_13 . exon 24738 25712 . + . ID=Physo108511.1;Parent=Physo108511;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_13 . exon 20108 20178 . - . ID=Physo130814.3;Parent=Physo130814;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . exon 20261 20352 . - . ID=Physo130814.2;Parent=Physo130814;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . exon 20442 20634 . - . ID=Physo130814.1;Parent=Physo130814;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 21785 23995 . - . ID=Physo130816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130007;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 21785 23995 . - . ID=Physo130816;Parent=Physo130816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 21785 23995 . - 0 ID=Physo130816;Parent=Physo130816;rank=1 scaffold_13 . exon 21785 23995 . - . ID=Physo130816.1;Parent=Physo130816;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 25712 28105 . - . ID=Physo130818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130009;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 25712 28105 . - . ID=Physo130818;Parent=Physo130818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 25712 26024 . - . ID=Physo130818.4;Parent=Physo130818;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_13 . CDS 25809 26024 . - 0 ID=Physo130818;Parent=Physo130818;rank=4 scaffold_13 . CDS 26624 26885 . - 0 ID=Physo130818;Parent=Physo130818;rank=3 scaffold_13 . exon 26624 26885 . - . ID=Physo130818.3;Parent=Physo130818;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 26918 27039 . - 0 ID=Physo130818;Parent=Physo130818;rank=2 scaffold_13 . exon 26918 27039 . - . ID=Physo130818.2;Parent=Physo130818;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 27626 28105 . - 0 ID=Physo130818;Parent=Physo130818;rank=1 scaffold_13 . exon 27626 28105 . - . ID=Physo130818.1;Parent=Physo130818;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 28443 29081 . - . ID=Physo130819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130010;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 28443 29081 . - . ID=Physo130819;Parent=Physo130819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 28443 29081 . - 0 ID=Physo130819;Parent=Physo130819;rank=1 scaffold_13 . exon 28443 29081 . - . ID=Physo130819.1;Parent=Physo130819;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 29238 30678 . + . ID=Physo130820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130011;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 29238 30678 . + . ID=Physo130820;Parent=Physo130820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 29238 29326 . + . ID=Physo130820.1;Parent=Physo130820;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 29270 29326 . + 0 ID=Physo130820;Parent=Physo130820;rank=1 scaffold_13 . CDS 29410 29517 . + 0 ID=Physo130820;Parent=Physo130820;rank=2 scaffold_13 . exon 29410 29517 . + . ID=Physo130820.2;Parent=Physo130820;constitutive=1;rank=2 scaffold_13 . CDS 29591 30091 . + 0 ID=Physo130820;Parent=Physo130820;rank=3 scaffold_13 . exon 29591 30091 . + . ID=Physo130820.3;Parent=Physo130820;constitutive=1;rank=3 scaffold_13 . CDS 30164 30202 . + 0 ID=Physo130820;Parent=Physo130820;rank=4 scaffold_13 . CDS 30301 30678 . + 0 ID=Physo130820;Parent=Physo130820;rank=5 scaffold_13 . repeat_region 36069 36111 . ? . description=dust scaffold_13 . repeat_region 38715 38722 . ? . description=dust scaffold_13 ensembl snoRNA_gene 32440 32520 . + . ID=EPrPSOG00000000184;biotype=snoRNA;description=Small nucleolar RNA snR56 [Source:RFAM%3BAcc:RF01188];external_name=snR56;logic_name=ncrna_eg scaffold_13 ensembl snoRNA 32440 32520 . + . ID=EPrPSOT00000000184;Parent=EPrPSOG00000000184;biotype=snoRNA;logic_name=ncrna_eg scaffold_13 . exon 32440 32520 . + . ID=EPrPSOE00000000184;Parent=EPrPSOT00000000184;constitutive=1;rank=1 scaffold_13 . exon 30164 30202 . + . ID=Physo130820.4;Parent=Physo130820;constitutive=1;rank=4 scaffold_13 . exon 30301 30678 . + . ID=Physo130820.5;Parent=Physo130820;constitutive=1;rank=5 scaffold_13 ensembl protein_coding_gene 32774 35413 . - . ID=Physo130821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130012;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 32774 35413 . - . ID=Physo130821;Parent=Physo130821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 32774 35413 . - 0 ID=Physo130821;Parent=Physo130821;rank=1 scaffold_13 . exon 32774 35413 . - . ID=Physo130821.1;Parent=Physo130821;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 35586 36071 . + . ID=Physo130822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130013;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 35586 36071 . + . ID=Physo130822;Parent=Physo130822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 35586 36071 . + 0 ID=Physo130822;Parent=Physo130822;rank=1 scaffold_13 . exon 35586 36071 . + . ID=Physo130822.1;Parent=Physo130822;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 36157 37120 . - . ID=Physo130823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130014;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 36157 37120 . - . ID=Physo130823;Parent=Physo130823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 36157 36291 . - 0 ID=Physo130823;Parent=Physo130823;rank=5 scaffold_13 . exon 36157 36291 . - . ID=Physo130823.5;Parent=Physo130823;constitutive=1;rank=5 scaffold_13 . CDS 36356 36409 . - 0 ID=Physo130823;Parent=Physo130823;rank=4 scaffold_13 . exon 36356 36409 . - . ID=Physo130823.4;Parent=Physo130823;constitutive=1;rank=4 scaffold_13 . CDS 36480 36568 . - 0 ID=Physo130823;Parent=Physo130823;rank=3 scaffold_13 . exon 36480 36568 . - . ID=Physo130823.3;Parent=Physo130823;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 36640 36699 . - 0 ID=Physo130823;Parent=Physo130823;rank=2 scaffold_13 . exon 36640 36699 . - . ID=Physo130823.2;Parent=Physo130823;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 36775 37120 . - 0 ID=Physo130823;Parent=Physo130823;rank=1 scaffold_13 . exon 36775 37120 . - . ID=Physo130823.1;Parent=Physo130823;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 37464 38099 . - . ID=Physo130824;biotype=protein_coding;description=PsAvh258 [Source:UniProtKB/TrEMBL%3BAcc:E0W4R9];external_name=estExt_fgenesh1_pg.C_130015;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 37464 38099 . - . ID=Physo130824;Parent=Physo130824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 37464 37478 . - 0 ID=Physo130824;Parent=Physo130824;rank=2 scaffold_13 . exon 37464 37478 . - . ID=Physo130824.2;Parent=Physo130824;constitutive=1;rank=2 scaffold_13 . CDS 37521 38099 . - 0 ID=Physo130824;Parent=Physo130824;rank=1 scaffold_13 . exon 37521 38099 . - . ID=Physo130824.1;Parent=Physo130824;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 39214 39593 . + . ID=Physo130825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130016;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 39214 39593 . + . ID=Physo130825;Parent=Physo130825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 39214 39519 . + 0 ID=Physo130825;Parent=Physo130825;rank=1 scaffold_13 . exon 39214 39593 . + . ID=Physo130825.1;Parent=Physo130825;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_13 . repeat_region 39703 40008 . - . description=GypsyPi-1c_LTR scaffold_13 . biological_region 44909 44911 0.999 + . logic_name=eponine scaffold_13 . biological_region 45505 45507 0.999 - . logic_name=eponine scaffold_13 . biological_region 46617 46617 0.999 - . logic_name=eponine scaffold_13 . biological_region 47186 47186 0.999 - . logic_name=eponine scaffold_13 . biological_region 47928 47929 0.999 + . logic_name=eponine scaffold_13 . biological_region 48033 48034 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 47964 57681 . + . ID=Physo130826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130017;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 47964 57681 . + . ID=Physo130826;Parent=Physo130826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 47964 49678 . + 0 ID=Physo130826;Parent=Physo130826;rank=1 scaffold_13 . exon 47964 49678 . + . ID=Physo130826.1;Parent=Physo130826;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 49703 50215 . + 0 ID=Physo130826;Parent=Physo130826;rank=2 scaffold_13 . CDS 50501 50946 . + 0 ID=Physo130826;Parent=Physo130826;rank=3 scaffold_13 . CDS 51506 51859 . + 0 ID=Physo130826;Parent=Physo130826;rank=4 scaffold_13 . CDS 52028 52104 . + 0 ID=Physo130826;Parent=Physo130826;rank=5 scaffold_13 . CDS 52137 53630 . + 0 ID=Physo130826;Parent=Physo130826;rank=6 scaffold_13 . CDS 53748 54047 . + 0 ID=Physo130826;Parent=Physo130826;rank=7 scaffold_13 . CDS 54331 56634 . + 0 ID=Physo130826;Parent=Physo130826;rank=8 scaffold_13 . CDS 56680 57681 . + 0 ID=Physo130826;Parent=Physo130826;rank=9 scaffold_13 . repeat_region 53298 53307 . ? . description=dust scaffold_13 . exon 49703 50215 . + . ID=Physo130826.2;Parent=Physo130826;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_13 . exon 50501 50946 . + . ID=Physo130826.3;Parent=Physo130826;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . exon 51506 51859 . + . ID=Physo130826.4;Parent=Physo130826;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_13 . exon 52028 52104 . + . ID=Physo130826.5;Parent=Physo130826;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . exon 52137 53630 . + . ID=Physo130826.6;Parent=Physo130826;constitutive=1;rank=6 scaffold_13 . exon 53748 54047 . + . ID=Physo130826.7;Parent=Physo130826;constitutive=1;rank=7 scaffold_13 . exon 54331 56634 . + . ID=Physo130826.8;Parent=Physo130826;constitutive=1;rank=8 scaffold_13 . exon 56680 57681 . + . ID=Physo130826.9;Parent=Physo130826;constitutive=1;rank=9 scaffold_13 . repeat_region 59964 59983 . ? . description=trf scaffold_13 . biological_region 65749 65752 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 62588 72425 . + . ID=Physo130827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130018;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 62588 72425 . + . ID=Physo130827;Parent=Physo130827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 62588 62606 . + 0 ID=Physo130827;Parent=Physo130827;rank=1 scaffold_13 . exon 62588 62606 . + . ID=Physo130827.1;Parent=Physo130827;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 63024 64179 . + 0 ID=Physo130827;Parent=Physo130827;rank=2 scaffold_13 . exon 63024 64179 . + . ID=Physo130827.2;Parent=Physo130827;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 64353 65295 . + 0 ID=Physo130827;Parent=Physo130827;rank=3 scaffold_13 . exon 64353 65295 . + . ID=Physo130827.3;Parent=Physo130827;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 65356 65518 . + 0 ID=Physo130827;Parent=Physo130827;rank=4 scaffold_13 . exon 65356 65518 . + . ID=Physo130827.4;Parent=Physo130827;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 65551 66885 . + 0 ID=Physo130827;Parent=Physo130827;rank=5 scaffold_13 . exon 65551 66885 . + . ID=Physo130827.5;Parent=Physo130827;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 67239 67332 . + 0 ID=Physo130827;Parent=Physo130827;rank=6 scaffold_13 . exon 67239 67332 . + . ID=Physo130827.6;Parent=Physo130827;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_13 . CDS 67507 69897 . + 0 ID=Physo130827;Parent=Physo130827;rank=7 scaffold_13 . exon 67507 69897 . + . ID=Physo130827.7;Parent=Physo130827;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_13 . CDS 69928 69982 . + 0 ID=Physo130827;Parent=Physo130827;rank=8 scaffold_13 . CDS 70404 71538 . + 0 ID=Physo130827;Parent=Physo130827;rank=9 scaffold_13 . CDS 71749 72425 . + 0 ID=Physo130827;Parent=Physo130827;rank=10 scaffold_13 . exon 69928 69982 . + . ID=Physo130827.8;Parent=Physo130827;constitutive=1;ensembl_phase=2;rank=8 scaffold_13 . exon 70404 71538 . + . ID=Physo130827.9;Parent=Physo130827;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_13 . exon 71749 72425 . + . ID=Physo130827.10;Parent=Physo130827;constitutive=1;ensembl_phase=1;rank=10 scaffold_13 ensembl protein_coding_gene 72860 76216 . - . ID=Physo130828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130019;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 72860 76216 . - . ID=Physo130828;Parent=Physo130828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 72860 73404 . - 0 ID=Physo130828;Parent=Physo130828;rank=4 scaffold_13 . exon 72860 73404 . - . ID=Physo130828.4;Parent=Physo130828;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 73437 74005 . - 0 ID=Physo130828;Parent=Physo130828;rank=3 scaffold_13 . exon 73437 74005 . - . ID=Physo130828.3;Parent=Physo130828;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 74053 75247 . - 0 ID=Physo130828;Parent=Physo130828;rank=2 scaffold_13 . exon 74053 75247 . - . ID=Physo130828.2;Parent=Physo130828;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 75418 76216 . - 0 ID=Physo130828;Parent=Physo130828;rank=1 scaffold_13 . exon 75418 76216 . - . ID=Physo130828.1;Parent=Physo130828;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . biological_region 79427 79429 0.999 + . logic_name=eponine scaffold_13 . biological_region 81692 81695 0.999 + . logic_name=eponine scaffold_13 . biological_region 81706 81710 0.999 + . logic_name=eponine scaffold_13 . biological_region 81879 81879 0.999 - . logic_name=eponine scaffold_13 . repeat_region 81998 82070 . - . description=GypsyPi-1c_I-int scaffold_13 . biological_region 82152 82159 0.999 + . logic_name=eponine scaffold_13 . repeat_region 82391 85315 . - . description=GypsyPi-1c_I-int scaffold_13 . biological_region 82932 82935 0.999 - . logic_name=eponine scaffold_13 . biological_region 85735 85738 0.999 - . logic_name=eponine scaffold_13 . biological_region 85808 85816 0.999 - . logic_name=eponine scaffold_13 . biological_region 85865 85867 0.999 + . logic_name=eponine scaffold_13 . repeat_region 85952 86487 . - . description=GypsyPi-1c_I-int scaffold_13 . biological_region 86215 86217 0.999 - . logic_name=eponine scaffold_13 . biological_region 86268 86274 0.999 + . logic_name=eponine scaffold_13 . repeat_region 87097 87258 . - . description=GypsyPi-1c_I-int scaffold_13 . biological_region 87406 87411 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 82084 87488 . - . ID=Physo130829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130020;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 82084 87488 . - . ID=Physo130829;Parent=Physo130829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 82084 82320 . - 0 ID=Physo130829;Parent=Physo130829;rank=9 scaffold_13 . exon 82084 82320 . - . ID=Physo130829.9;Parent=Physo130829;constitutive=1;rank=9 scaffold_13 . CDS 82385 82545 . - 0 ID=Physo130829;Parent=Physo130829;rank=8 scaffold_13 . exon 82385 82545 . - . ID=Physo130829.8;Parent=Physo130829;constitutive=1;ensembl_phase=1;rank=8 scaffold_13 . CDS 82780 83238 . - 0 ID=Physo130829;Parent=Physo130829;rank=7 scaffold_13 . exon 82780 83238 . - . ID=Physo130829.7;Parent=Physo130829;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_13 . CDS 83368 84069 . - 0 ID=Physo130829;Parent=Physo130829;rank=6 scaffold_13 . exon 83368 84069 . - . ID=Physo130829.6;Parent=Physo130829;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_13 . CDS 84309 84579 . - 0 ID=Physo130829;Parent=Physo130829;rank=5 scaffold_13 . exon 84309 84579 . - . ID=Physo130829.5;Parent=Physo130829;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . CDS 84702 85771 . - 0 ID=Physo130829;Parent=Physo130829;rank=4 scaffold_13 . exon 84702 85771 . - . ID=Physo130829.4;Parent=Physo130829;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 85842 85954 . - 0 ID=Physo130829;Parent=Physo130829;rank=3 scaffold_13 . exon 85842 85954 . - . ID=Physo130829.3;Parent=Physo130829;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 86087 86207 . - 0 ID=Physo130829;Parent=Physo130829;rank=2 scaffold_13 . exon 86087 86207 . - . ID=Physo130829.2;Parent=Physo130829;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 86513 87488 . - 0 ID=Physo130829;Parent=Physo130829;rank=1 scaffold_13 . exon 86513 87488 . - . ID=Physo130829.1;Parent=Physo130829;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 88390 89776 . - . ID=Physo130830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130021;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 88390 89776 . - . ID=Physo130830;Parent=Physo130830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 88390 88754 . - 0 ID=Physo130830;Parent=Physo130830;rank=4 scaffold_13 . exon 88390 88754 . - . ID=Physo130830.4;Parent=Physo130830;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 88825 88946 . - 0 ID=Physo130830;Parent=Physo130830;rank=3 scaffold_13 . exon 88825 88946 . - . ID=Physo130830.3;Parent=Physo130830;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 89219 89564 . - 0 ID=Physo130830;Parent=Physo130830;rank=2 scaffold_13 . CDS 89635 89776 . - 0 ID=Physo130830;Parent=Physo130830;rank=1 scaffold_13 . repeat_region 91594 91603 . ? . description=dust scaffold_13 . repeat_region 91931 91984 . ? . description=dust scaffold_13 . exon 89219 89564 . - . ID=Physo130830.2;Parent=Physo130830;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . exon 89635 89776 . - . ID=Physo130830.1;Parent=Physo130830;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 91926 96718 . + . ID=Physo130831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130022;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 91926 96718 . + . ID=Physo130831;Parent=Physo130831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 91926 96110 . + 0 ID=Physo130831;Parent=Physo130831;rank=1 scaffold_13 . exon 91926 96110 . + . ID=Physo130831.1;Parent=Physo130831;constitutive=1;rank=1 scaffold_13 . CDS 96186 96644 . + 0 ID=Physo130831;Parent=Physo130831;rank=2 scaffold_13 . exon 96186 96718 . + . ID=Physo130831.2;Parent=Physo130831;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_13 ensembl protein_coding_gene 98848 100060 . - . ID=Physo130832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130023;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 98848 100060 . - . ID=Physo130832;Parent=Physo130832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 98848 99648 . - . ID=Physo130832.3;Parent=Physo130832;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_13 . CDS 98881 99648 . - 0 ID=Physo130832;Parent=Physo130832;rank=3 scaffold_13 . CDS 99690 99760 . - 0 ID=Physo130832;Parent=Physo130832;rank=2 scaffold_13 . CDS 99853 100060 . - 0 ID=Physo130832;Parent=Physo130832;rank=1 scaffold_13 . biological_region 102811 102814 0.999 - . logic_name=eponine scaffold_13 . biological_region 102888 102893 0.999 + . logic_name=eponine scaffold_13 . biological_region 105963 105964 0.999 + . logic_name=eponine scaffold_13 . repeat_region 106664 106685 . ? . description=trf scaffold_13 . repeat_region 106925 106948 . ? . description=trf scaffold_13 . biological_region 107116 107117 0.999 - . logic_name=eponine scaffold_13 . biological_region 108058 108062 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 102521 103760 . + . ID=Physo108512;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_130003;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 102521 103760 . + . ID=Physo108512;Parent=Physo108512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 102521 103651 . + 0 ID=Physo108512;Parent=Physo108512;rank=1 scaffold_13 . exon 102521 103760 . + . ID=Physo108512.1;Parent=Physo108512;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_13 . exon 99690 99760 . - . ID=Physo130832.2;Parent=Physo130832;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . exon 99853 100060 . - . ID=Physo130832.1;Parent=Physo130832;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 107905 108642 . + . ID=Physo130834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130025;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 107905 108642 . + . ID=Physo130834;Parent=Physo130834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 107905 108642 . + . ID=Physo130834.1;Parent=Physo130834;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 107996 108511 . + 0 ID=Physo130834;Parent=Physo130834;rank=1 scaffold_13 . repeat_region 112391 112398 . ? . description=dust scaffold_13 . repeat_region 115703 115714 . ? . description=dust scaffold_13 ensembl protein_coding_gene 125061 125240 . + . ID=Physo113307;biotype=protein_coding;external_name=estExt_Genewise1.C_130090;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 125061 125240 . + . ID=Physo113307;Parent=Physo113307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 125061 125240 . + . ID=Physo113307.1;Parent=Physo113307;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 125100 125240 . + 0 ID=Physo113307;Parent=Physo113307;rank=1 scaffold_13 ensembl protein_coding_gene 121213 122794 . + . ID=Physo130835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130026;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 121213 122794 . + . ID=Physo130835;Parent=Physo130835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 121213 121511 . + 0 ID=Physo130835;Parent=Physo130835;rank=1 scaffold_13 . exon 121213 121511 . + . ID=Physo130835.1;Parent=Physo130835;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 121725 122701 . + 0 ID=Physo130835;Parent=Physo130835;rank=2 scaffold_13 . exon 121725 122701 . + . ID=Physo130835.2;Parent=Physo130835;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 122769 122794 . + 0 ID=Physo130835;Parent=Physo130835;rank=3 scaffold_13 . exon 122769 122794 . + . ID=Physo130835.3;Parent=Physo130835;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 ensembl protein_coding_gene 125486 126337 . + . ID=Physo130836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130027;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 125486 126337 . + . ID=Physo130836;Parent=Physo130836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 125486 126337 . + 0 ID=Physo130836;Parent=Physo130836;rank=1 scaffold_13 . exon 125486 126337 . + . ID=Physo130836.1;Parent=Physo130836;constitutive=1;rank=1 scaffold_13 . biological_region 130736 130737 0.999 + . logic_name=eponine scaffold_13 . biological_region 133455 133458 0.999 + . logic_name=eponine scaffold_13 . repeat_region 135795 135805 . ? . description=dust scaffold_13 ensembl protein_coding_gene 133016 134253 . + . ID=Physo130837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130028;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 133016 134253 . + . ID=Physo130837;Parent=Physo130837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 133016 133082 . + 0 ID=Physo130837;Parent=Physo130837;rank=1 scaffold_13 . exon 133016 133082 . + . ID=Physo130837.1;Parent=Physo130837;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 133136 134253 . + 0 ID=Physo130837;Parent=Physo130837;rank=2 scaffold_13 . exon 133136 134253 . + . ID=Physo130837.2;Parent=Physo130837;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . repeat_region 146971 162561 . ? . description=dust scaffold_13 . biological_region 165843 165845 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 164153 166129 . + . ID=Physo130838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130029;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 164153 166129 . + . ID=Physo130838;Parent=Physo130838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 164153 166129 . + 0 ID=Physo130838;Parent=Physo130838;rank=1 scaffold_13 . exon 164153 166129 . + . ID=Physo130838.1;Parent=Physo130838;constitutive=1;rank=1 scaffold_13 . repeat_region 174028 174053 . ? . description=trf scaffold_13 ensembl protein_coding_gene 175592 176840 . + . ID=Physo130839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130030;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 175592 176840 . + . ID=Physo130839;Parent=Physo130839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 175592 175836 . + 0 ID=Physo130839;Parent=Physo130839;rank=1 scaffold_13 . exon 175592 175836 . + . ID=Physo130839.1;Parent=Physo130839;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 175954 176051 . + 0 ID=Physo130839;Parent=Physo130839;rank=2 scaffold_13 . exon 175954 176051 . + . ID=Physo130839.2;Parent=Physo130839;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 176156 176235 . + 0 ID=Physo130839;Parent=Physo130839;rank=3 scaffold_13 . exon 176156 176235 . + . ID=Physo130839.3;Parent=Physo130839;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 176299 176503 . + 0 ID=Physo130839;Parent=Physo130839;rank=4 scaffold_13 . exon 176299 176503 . + . ID=Physo130839.4;Parent=Physo130839;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 176569 176840 . + 0 ID=Physo130839;Parent=Physo130839;rank=5 scaffold_13 . exon 176569 176840 . + . ID=Physo130839.5;Parent=Physo130839;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 ensembl protein_coding_gene 177261 180168 . - . ID=Physo130840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130031;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 177261 180168 . - . ID=Physo130840;Parent=Physo130840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 177261 177496 . - 0 ID=Physo130840;Parent=Physo130840;rank=6 scaffold_13 . exon 177261 177496 . - . ID=Physo130840.6;Parent=Physo130840;constitutive=1;ensembl_phase=1;rank=6 scaffold_13 . CDS 177550 177969 . - 0 ID=Physo130840;Parent=Physo130840;rank=5 scaffold_13 . exon 177550 177969 . - . ID=Physo130840.5;Parent=Physo130840;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 178015 178399 . - 0 ID=Physo130840;Parent=Physo130840;rank=4 scaffold_13 . exon 178015 178399 . - . ID=Physo130840.4;Parent=Physo130840;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 178644 178668 . - 0 ID=Physo130840;Parent=Physo130840;rank=3 scaffold_13 . CDS 178985 179278 . - 0 ID=Physo130840;Parent=Physo130840;rank=2 scaffold_13 . CDS 179543 180168 . - 0 ID=Physo130840;Parent=Physo130840;rank=1 scaffold_13 . repeat_region 178502 178513 . ? . description=dust scaffold_13 . biological_region 178619 178622 0.999 - . logic_name=eponine scaffold_13 . biological_region 178639 178642 0.999 - . logic_name=eponine scaffold_13 . biological_region 179330 179334 0.999 - . logic_name=eponine scaffold_13 . biological_region 179419 179419 0.999 - . logic_name=eponine scaffold_13 . biological_region 179594 179596 0.999 + . logic_name=eponine scaffold_13 . biological_region 179615 179617 0.999 + . logic_name=eponine scaffold_13 . biological_region 179630 179637 0.999 + . logic_name=eponine scaffold_13 . biological_region 179658 179663 0.999 + . logic_name=eponine scaffold_13 . biological_region 179686 179693 0.999 - . logic_name=eponine scaffold_13 . biological_region 179690 179693 0.999 + . logic_name=eponine scaffold_13 . biological_region 179744 179746 0.999 + . logic_name=eponine scaffold_13 . biological_region 179746 179752 0.999 - . logic_name=eponine scaffold_13 . biological_region 179790 179790 0.999 + . logic_name=eponine scaffold_13 . biological_region 183521 183523 0.999 + . logic_name=eponine scaffold_13 . repeat_region 184089 184102 . ? . description=dust scaffold_13 . repeat_region 186160 186199 . ? . description=dust scaffold_13 . exon 178644 178668 . - . ID=Physo130840.3;Parent=Physo130840;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . exon 178985 179278 . - . ID=Physo130840.2;Parent=Physo130840;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_13 . exon 179543 180168 . - . ID=Physo130840.1;Parent=Physo130840;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . repeat_region 189967 189990 . ? . description=trf scaffold_13 . repeat_region 191642 191945 . ? . description=trf scaffold_13 . repeat_region 194132 194221 . ? . description=trf scaffold_13 . repeat_region 197055 197086 . ? . description=trf scaffold_13 ensembl protein_coding_gene 191326 192251 . + . ID=Physo130841;biotype=protein_coding;description=PsAvh288 [Source:UniProtKB/TrEMBL%3BAcc:E0W4S0];external_name=estExt_fgenesh1_pg.C_130032;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 191326 192251 . + . ID=Physo130841;Parent=Physo130841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 191326 192251 . + . ID=Physo130841.1;Parent=Physo130841;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 191364 192251 . + 0 ID=Physo130841;Parent=Physo130841;rank=1 scaffold_13 ensembl protein_coding_gene 193279 196726 . + . ID=Physo130842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130033;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 193279 196726 . + . ID=Physo130842;Parent=Physo130842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 193279 193431 . + 0 ID=Physo130842;Parent=Physo130842;rank=1 scaffold_13 . exon 193279 193431 . + . ID=Physo130842.1;Parent=Physo130842;constitutive=1;rank=1 scaffold_13 . CDS 193478 193990 . + 0 ID=Physo130842;Parent=Physo130842;rank=2 scaffold_13 . exon 193478 193990 . + . ID=Physo130842.2;Parent=Physo130842;constitutive=1;rank=2 scaffold_13 . CDS 194044 194228 . + 0 ID=Physo130842;Parent=Physo130842;rank=3 scaffold_13 . exon 194044 194228 . + . ID=Physo130842.3;Parent=Physo130842;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 194271 194620 . + 0 ID=Physo130842;Parent=Physo130842;rank=4 scaffold_13 . exon 194271 194620 . + . ID=Physo130842.4;Parent=Physo130842;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 194650 194921 . + 0 ID=Physo130842;Parent=Physo130842;rank=5 scaffold_13 . exon 194650 194921 . + . ID=Physo130842.5;Parent=Physo130842;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 194944 195113 . + 0 ID=Physo130842;Parent=Physo130842;rank=6 scaffold_13 . exon 194944 195113 . + . ID=Physo130842.6;Parent=Physo130842;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_13 . CDS 195184 195450 . + 0 ID=Physo130842;Parent=Physo130842;rank=7 scaffold_13 . exon 195184 195450 . + . ID=Physo130842.7;Parent=Physo130842;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_13 . CDS 195497 195734 . + 0 ID=Physo130842;Parent=Physo130842;rank=8 scaffold_13 . exon 195497 195734 . + . ID=Physo130842.8;Parent=Physo130842;constitutive=1;ensembl_phase=2;rank=8 scaffold_13 . CDS 195772 196098 . + 0 ID=Physo130842;Parent=Physo130842;rank=9 scaffold_13 . exon 195772 196098 . + . ID=Physo130842.9;Parent=Physo130842;constitutive=1;rank=9 scaffold_13 . CDS 196121 196194 . + 0 ID=Physo130842;Parent=Physo130842;rank=10 scaffold_13 . exon 196121 196194 . + . ID=Physo130842.10;Parent=Physo130842;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_13 . CDS 196243 196726 . + 0 ID=Physo130842;Parent=Physo130842;rank=11 scaffold_13 . exon 196243 196726 . + . ID=Physo130842.11;Parent=Physo130842;constitutive=1;ensembl_phase=2;rank=11 scaffold_13 . repeat_region 198633 198640 . ? . description=dust scaffold_13 . biological_region 200455 200455 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 200402 201326 . + . ID=Physo130843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130034;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 200402 201326 . + . ID=Physo130843;Parent=Physo130843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 200402 200416 . + 0 ID=Physo130843;Parent=Physo130843;rank=1 scaffold_13 . exon 200402 200416 . + . ID=Physo130843.1;Parent=Physo130843;constitutive=1;rank=1 scaffold_13 . CDS 200466 201326 . + 0 ID=Physo130843;Parent=Physo130843;rank=2 scaffold_13 . exon 200466 201326 . + . ID=Physo130843.2;Parent=Physo130843;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 205261 206482 . + . ID=Physo130844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130035;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 205261 206482 . + . ID=Physo130844;Parent=Physo130844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 205261 205865 . + . ID=Physo130844.1;Parent=Physo130844;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 205263 205865 . + 0 ID=Physo130844;Parent=Physo130844;rank=1 scaffold_13 . CDS 205941 206390 . + 0 ID=Physo130844;Parent=Physo130844;rank=2 scaffold_13 . exon 205941 206390 . + . ID=Physo130844.2;Parent=Physo130844;constitutive=1;rank=2 scaffold_13 . CDS 206465 206482 . + 0 ID=Physo130844;Parent=Physo130844;rank=3 scaffold_13 . exon 206465 206482 . + . ID=Physo130844.3;Parent=Physo130844;constitutive=1;rank=3 scaffold_13 ensembl protein_coding_gene 207857 208773 . - . ID=Physo130845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130036;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 207857 208773 . - . ID=Physo130845;Parent=Physo130845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 207857 208305 . - 0 ID=Physo130845;Parent=Physo130845;rank=2 scaffold_13 . exon 207857 208305 . - . ID=Physo130845.2;Parent=Physo130845;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 208485 208773 . - 0 ID=Physo130845;Parent=Physo130845;rank=1 scaffold_13 ensembl protein_coding_gene 214548 215783 . + . ID=Physo108513;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_130004;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 214548 215783 . + . ID=Physo108513;Parent=Physo108513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 214548 215783 . + 0 ID=Physo108513;Parent=Physo108513;rank=1 scaffold_13 . exon 214548 215783 . + . ID=Physo108513.1;Parent=Physo108513;constitutive=1;rank=1 scaffold_13 . exon 208485 208773 . - . ID=Physo130845.1;Parent=Physo130845;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 210562 211873 . - . ID=Physo130846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130037;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 210562 211873 . - . ID=Physo130846;Parent=Physo130846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 210562 211218 . - 0 ID=Physo130846;Parent=Physo130846;rank=3 scaffold_13 . exon 210562 211218 . - . ID=Physo130846.3;Parent=Physo130846;constitutive=1;rank=3 scaffold_13 . CDS 211303 211475 . - 0 ID=Physo130846;Parent=Physo130846;rank=2 scaffold_13 . exon 211303 211475 . - . ID=Physo130846.2;Parent=Physo130846;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 211582 211873 . - 0 ID=Physo130846;Parent=Physo130846;rank=1 scaffold_13 . exon 211582 211873 . - . ID=Physo130846.1;Parent=Physo130846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 213680 214409 . + . ID=Physo130847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130038;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 213680 214409 . + . ID=Physo130847;Parent=Physo130847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 213680 213976 . + . ID=Physo130847.1;Parent=Physo130847;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_13 . CDS 213681 213976 . + 0 ID=Physo130847;Parent=Physo130847;rank=1 scaffold_13 . CDS 214090 214183 . + 0 ID=Physo130847;Parent=Physo130847;rank=2 scaffold_13 . exon 214090 214409 . + . ID=Physo130847.2;Parent=Physo130847;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_13 ensembl protein_coding_gene 216204 218354 . - . ID=Physo130849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130040;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 216204 218354 . - . ID=Physo130849;Parent=Physo130849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 216204 218354 . - 0 ID=Physo130849;Parent=Physo130849;rank=1 scaffold_13 . exon 216204 218354 . - . ID=Physo130849.1;Parent=Physo130849;constitutive=1;rank=1 scaffold_13 . repeat_region 218701 218716 . ? . description=dust scaffold_13 . biological_region 218868 218876 0.999 - . logic_name=eponine scaffold_13 . biological_region 218944 218948 0.999 - . logic_name=eponine scaffold_13 . repeat_region 220744 220751 . ? . description=dust scaffold_13 . repeat_region 220813 220821 . ? . description=dust scaffold_13 . repeat_region 221779 221787 . ? . description=dust scaffold_13 . biological_region 222712 222714 0.999 + . logic_name=eponine scaffold_13 . biological_region 222980 222982 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 222061 223111 . + . ID=Physo130850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130041;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 222061 223111 . + . ID=Physo130850;Parent=Physo130850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 222061 223063 . + 0 ID=Physo130850;Parent=Physo130850;rank=1 scaffold_13 . exon 222061 223063 . + . ID=Physo130850.1;Parent=Physo130850;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 223095 223111 . + 0 ID=Physo130850;Parent=Physo130850;rank=2 scaffold_13 . exon 223095 223111 . + . ID=Physo130850.2;Parent=Physo130850;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 224090 225724 . - . ID=Physo130851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130042;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 224090 225724 . - . ID=Physo130851;Parent=Physo130851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 224090 224225 . - . ID=Physo130851.4;Parent=Physo130851;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_13 . CDS 224129 224225 . - 0 ID=Physo130851;Parent=Physo130851;rank=4 scaffold_13 . CDS 224303 225052 . - 0 ID=Physo130851;Parent=Physo130851;rank=3 scaffold_13 . exon 224303 225052 . - . ID=Physo130851.3;Parent=Physo130851;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_13 . CDS 225171 225343 . - 0 ID=Physo130851;Parent=Physo130851;rank=2 scaffold_13 . exon 225171 225343 . - . ID=Physo130851.2;Parent=Physo130851;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 225425 225724 . - 0 ID=Physo130851;Parent=Physo130851;rank=1 scaffold_13 . exon 225425 225724 . - . ID=Physo130851.1;Parent=Physo130851;constitutive=1;rank=1 scaffold_13 . repeat_region 233396 233451 . ? . description=trf scaffold_13 ensembl protein_coding_gene 232651 234105 . - . ID=Physo130852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130043;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 232651 234105 . - . ID=Physo130852;Parent=Physo130852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 232651 233805 . - 0 ID=Physo130852;Parent=Physo130852;rank=2 scaffold_13 . exon 232651 233805 . - . ID=Physo130852.2;Parent=Physo130852;constitutive=1;rank=2 scaffold_13 . CDS 233905 234105 . - 0 ID=Physo130852;Parent=Physo130852;rank=1 scaffold_13 . exon 233905 234105 . - . ID=Physo130852.1;Parent=Physo130852;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 234520 235488 . + . ID=Physo130853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130044;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 234520 235488 . + . ID=Physo130853;Parent=Physo130853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 234520 235488 . + 0 ID=Physo130853;Parent=Physo130853;rank=1 scaffold_13 . exon 234520 235488 . + . ID=Physo130853.1;Parent=Physo130853;constitutive=1;rank=1 scaffold_13 . repeat_region 238179 238186 . ? . description=dust scaffold_13 . repeat_region 239054 239064 . ? . description=dust scaffold_13 . biological_region 241916 241918 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 241463 243632 . + . ID=Physo130854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130045;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 241463 243632 . + . ID=Physo130854;Parent=Physo130854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 241463 241516 . + 0 ID=Physo130854;Parent=Physo130854;rank=1 scaffold_13 . exon 241463 241516 . + . ID=Physo130854.1;Parent=Physo130854;constitutive=1;rank=1 scaffold_13 . CDS 241740 242309 . + 0 ID=Physo130854;Parent=Physo130854;rank=2 scaffold_13 . exon 241740 242309 . + . ID=Physo130854.2;Parent=Physo130854;constitutive=1;rank=2 scaffold_13 . CDS 242529 243632 . + 0 ID=Physo130854;Parent=Physo130854;rank=3 scaffold_13 . exon 242529 243632 . + . ID=Physo130854.3;Parent=Physo130854;constitutive=1;rank=3 scaffold_13 ensembl protein_coding_gene 243982 245795 . - . ID=Physo130855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130046;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 243982 245795 . - . ID=Physo130855;Parent=Physo130855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 243982 244944 . - 0 ID=Physo130855;Parent=Physo130855;rank=2 scaffold_13 . exon 243982 244944 . - . ID=Physo130855.2;Parent=Physo130855;constitutive=1;rank=2 scaffold_13 . CDS 245148 245795 . - 0 ID=Physo130855;Parent=Physo130855;rank=1 scaffold_13 . exon 245148 245795 . - . ID=Physo130855.1;Parent=Physo130855;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 246799 247473 . + . ID=Physo130856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130047;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 246799 247473 . + . ID=Physo130856;Parent=Physo130856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 246799 247473 . + 0 ID=Physo130856;Parent=Physo130856;rank=1 scaffold_13 . exon 246799 247473 . + . ID=Physo130856.1;Parent=Physo130856;constitutive=1;rank=1 scaffold_13 . repeat_region 254216 254323 . ? . description=trf scaffold_13 ensembl protein_coding_gene 247804 248644 . - . ID=Physo130857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130048;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 247804 248644 . - . ID=Physo130857;Parent=Physo130857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 247804 248397 . - 0 ID=Physo130857;Parent=Physo130857;rank=2 scaffold_13 . exon 247804 248397 . - . ID=Physo130857.2;Parent=Physo130857;constitutive=1;rank=2 scaffold_13 . CDS 248420 248644 . - 0 ID=Physo130857;Parent=Physo130857;rank=1 scaffold_13 . exon 248420 248644 . - . ID=Physo130857.1;Parent=Physo130857;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 250853 252940 . + . ID=Physo130858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130049;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 250853 252940 . + . ID=Physo130858;Parent=Physo130858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 250853 252940 . + . ID=Physo130858.1;Parent=Physo130858;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 251066 252940 . + 0 ID=Physo130858;Parent=Physo130858;rank=1 scaffold_13 ensembl protein_coding_gene 254014 257227 . - . ID=Physo130859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130050;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 254014 257227 . - . ID=Physo130859;Parent=Physo130859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 254014 256947 . - 0 ID=Physo130859;Parent=Physo130859;rank=3 scaffold_13 . exon 254014 256947 . - . ID=Physo130859.3;Parent=Physo130859;constitutive=1;rank=3 scaffold_13 . CDS 257026 257076 . - 0 ID=Physo130859;Parent=Physo130859;rank=2 scaffold_13 . exon 257026 257076 . - . ID=Physo130859.2;Parent=Physo130859;constitutive=1;rank=2 scaffold_13 . CDS 257177 257227 . - 0 ID=Physo130859;Parent=Physo130859;rank=1 scaffold_13 . exon 257177 257227 . - . ID=Physo130859.1;Parent=Physo130859;constitutive=1;rank=1 scaffold_13 . biological_region 259177 259181 0.999 - . logic_name=eponine scaffold_13 . biological_region 260860 260861 0.999 - . logic_name=eponine scaffold_13 . biological_region 263041 263046 0.999 - . logic_name=eponine scaffold_13 . repeat_region 264510 264520 . ? . description=dust scaffold_13 . repeat_region 264609 264629 . ? . description=dust scaffold_13 . repeat_region 265183 265199 . ? . description=dust scaffold_13 ensembl protein_coding_gene 260065 262101 . - . ID=Physo130860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130051;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 260065 262101 . - . ID=Physo130860;Parent=Physo130860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 260065 262101 . - 0 ID=Physo130860;Parent=Physo130860;rank=1 scaffold_13 . exon 260065 262101 . - . ID=Physo130860.1;Parent=Physo130860;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 264524 266048 . + . ID=Physo130861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130052;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 264524 266048 . + . ID=Physo130861;Parent=Physo130861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 264524 265151 . + 0 ID=Physo130861;Parent=Physo130861;rank=1 scaffold_13 . exon 264524 265151 . + . ID=Physo130861.1;Parent=Physo130861;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 265265 265542 . + 0 ID=Physo130861;Parent=Physo130861;rank=2 scaffold_13 . exon 265265 265542 . + . ID=Physo130861.2;Parent=Physo130861;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 265614 266048 . + 0 ID=Physo130861;Parent=Physo130861;rank=3 scaffold_13 . exon 265614 266048 . + . ID=Physo130861.3;Parent=Physo130861;constitutive=1;rank=3 scaffold_13 . repeat_region 268826 268845 . ? . description=trf scaffold_13 . repeat_region 270240 270263 . ? . description=trf scaffold_13 ensembl protein_coding_gene 269928 271805 . + . ID=Physo130862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130053;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 269928 271805 . + . ID=Physo130862;Parent=Physo130862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 269928 271805 . + 0 ID=Physo130862;Parent=Physo130862;rank=1 scaffold_13 . exon 269928 271805 . + . ID=Physo130862.1;Parent=Physo130862;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 272281 274329 . + . ID=Physo130863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130054;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 272281 274329 . + . ID=Physo130863;Parent=Physo130863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 272281 274329 . + 0 ID=Physo130863;Parent=Physo130863;rank=1 scaffold_13 . exon 272281 274329 . + . ID=Physo130863.1;Parent=Physo130863;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 274452 276070 . - . ID=Physo130864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130055;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 274452 276070 . - . ID=Physo130864;Parent=Physo130864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 274452 274889 . - . ID=Physo130864.5;Parent=Physo130864;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_13 . CDS 274466 274889 . - 0 ID=Physo130864;Parent=Physo130864;rank=5 scaffold_13 . CDS 274963 275196 . - 0 ID=Physo130864;Parent=Physo130864;rank=4 scaffold_13 . exon 274963 275196 . - . ID=Physo130864.4;Parent=Physo130864;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_13 . CDS 275273 275371 . - 0 ID=Physo130864;Parent=Physo130864;rank=3 scaffold_13 . exon 275273 275371 . - . ID=Physo130864.3;Parent=Physo130864;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_13 . CDS 275394 275415 . - 0 ID=Physo130864;Parent=Physo130864;rank=2 scaffold_13 . exon 275394 275415 . - . ID=Physo130864.2;Parent=Physo130864;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 275488 276070 . - 0 ID=Physo130864;Parent=Physo130864;rank=1 scaffold_13 . exon 275488 276070 . - . ID=Physo130864.1;Parent=Physo130864;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . repeat_region 277814 277862 . ? . description=dust scaffold_13 . repeat_region 280184 280191 . ? . description=dust scaffold_13 . repeat_region 281913 281942 . ? . description=dust scaffold_13 . biological_region 287113 287118 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 277483 281043 . + . ID=Physo130865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130056;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 277483 281043 . + . ID=Physo130865;Parent=Physo130865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 277483 278795 . + 0 ID=Physo130865;Parent=Physo130865;rank=1 scaffold_13 . exon 277483 278795 . + . ID=Physo130865.1;Parent=Physo130865;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 278860 278913 . + 0 ID=Physo130865;Parent=Physo130865;rank=2 scaffold_13 . exon 278860 278913 . + . ID=Physo130865.2;Parent=Physo130865;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_13 . CDS 279360 279791 . + 0 ID=Physo130865;Parent=Physo130865;rank=3 scaffold_13 . exon 279360 279791 . + . ID=Physo130865.3;Parent=Physo130865;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_13 . CDS 279893 279929 . + 0 ID=Physo130865;Parent=Physo130865;rank=4 scaffold_13 . exon 279893 279929 . + . ID=Physo130865.4;Parent=Physo130865;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 280341 280779 . + 0 ID=Physo130865;Parent=Physo130865;rank=5 scaffold_13 . exon 280341 280779 . + . ID=Physo130865.5;Parent=Physo130865;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . CDS 280830 280858 . + 0 ID=Physo130865;Parent=Physo130865;rank=6 scaffold_13 . exon 280830 281043 . + . ID=Physo130865.6;Parent=Physo130865;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_13 ensembl protein_coding_gene 281036 282548 . - . ID=Physo130866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130057;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 281036 282548 . - . ID=Physo130866;Parent=Physo130866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 281036 281045 . - 0 ID=Physo130866;Parent=Physo130866;rank=4 scaffold_13 . exon 281036 281045 . - . ID=Physo130866.4;Parent=Physo130866;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 281100 281470 . - 0 ID=Physo130866;Parent=Physo130866;rank=3 scaffold_13 . exon 281100 281470 . - . ID=Physo130866.3;Parent=Physo130866;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 281537 281875 . - 0 ID=Physo130866;Parent=Physo130866;rank=2 scaffold_13 . exon 281537 281875 . - . ID=Physo130866.2;Parent=Physo130866;constitutive=1;rank=2 scaffold_13 . CDS 281949 282548 . - 0 ID=Physo130866;Parent=Physo130866;rank=1 scaffold_13 . exon 281949 282548 . - . ID=Physo130866.1;Parent=Physo130866;constitutive=1;rank=1 scaffold_13 . repeat_region 292409 292448 . ? . description=trf scaffold_13 . repeat_region 295204 295254 . ? . description=trf scaffold_13 . repeat_region 295238 295298 . ? . description=trf scaffold_13 . repeat_region 295285 295339 . ? . description=trf scaffold_13 . repeat_region 295685 295711 . ? . description=trf scaffold_13 . repeat_region 296629 296657 . ? . description=trf scaffold_13 . repeat_region 296746 296783 . ? . description=trf scaffold_13 . repeat_region 296839 297026 . ? . description=trf scaffold_13 . repeat_region 296953 296990 . ? . description=trf scaffold_13 . repeat_region 296954 297132 . + . description=(CTA)n scaffold_13 . repeat_region 297000 297122 . ? . description=trf scaffold_13 . repeat_region 297008 297068 . ? . description=trf scaffold_13 ensembl protein_coding_gene 292092 292433 . - . ID=Physo130867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130058;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 292092 292433 . - . ID=Physo130867;Parent=Physo130867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 292092 292433 . - 0 ID=Physo130867;Parent=Physo130867;rank=1 scaffold_13 . exon 292092 292433 . - . ID=Physo130867.1;Parent=Physo130867;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 293295 293966 . - . ID=Physo130868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130059;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 293295 293966 . - . ID=Physo130868;Parent=Physo130868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 293295 293966 . - 0 ID=Physo130868;Parent=Physo130868;rank=1 scaffold_13 . exon 293295 293966 . - . ID=Physo130868.1;Parent=Physo130868;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 294423 295690 . + . ID=Physo130869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130060;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 294423 295690 . + . ID=Physo130869;Parent=Physo130869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 294423 294654 . + 0 ID=Physo130869;Parent=Physo130869;rank=1 scaffold_13 . exon 294423 294654 . + . ID=Physo130869.1;Parent=Physo130869;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 294753 294805 . + 0 ID=Physo130869;Parent=Physo130869;rank=2 scaffold_13 . exon 294753 294805 . + . ID=Physo130869.2;Parent=Physo130869;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 295313 295690 . + 0 ID=Physo130869;Parent=Physo130869;rank=3 scaffold_13 . exon 295313 295690 . + . ID=Physo130869.3;Parent=Physo130869;constitutive=1;rank=3 scaffold_13 ensembl protein_coding_gene 296481 297458 . + . ID=Physo130870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130061;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 296481 297458 . + . ID=Physo130870;Parent=Physo130870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 296481 297458 . + 0 ID=Physo130870;Parent=Physo130870;rank=1 scaffold_13 . exon 296481 297458 . + . ID=Physo130870.1;Parent=Physo130870;constitutive=1;rank=1 scaffold_13 . repeat_region 307147 307412 . ? . description=trf scaffold_13 . repeat_region 308106 308134 . ? . description=trf scaffold_13 . repeat_region 310314 310373 . ? . description=dust scaffold_13 . repeat_region 310724 310740 . ? . description=dust scaffold_13 . biological_region 311252 311252 0.999 + . logic_name=eponine scaffold_13 . repeat_region 311537 311544 . ? . description=dust scaffold_13 . repeat_region 314555 314611 . ? . description=dust scaffold_13 . repeat_region 314555 314611 . ? . description=trf scaffold_13 . repeat_region 318783 318868 . + . description=(CGA)n scaffold_13 ensembl protein_coding_gene 318587 318940 . + . ID=Physo130871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130062;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 318587 318940 . + . ID=Physo130871;Parent=Physo130871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 318587 318940 . + 0 ID=Physo130871;Parent=Physo130871;rank=1 scaffold_13 . exon 318587 318940 . + . ID=Physo130871.1;Parent=Physo130871;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 324526 325701 . - . ID=Physo130872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130063;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 324526 325701 . - . ID=Physo130872;Parent=Physo130872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 324526 325701 . - 0 ID=Physo130872;Parent=Physo130872;rank=1 scaffold_13 . exon 324526 325701 . - . ID=Physo130872.1;Parent=Physo130872;constitutive=1;rank=1 scaffold_13 . repeat_region 327022 327029 . ? . description=dust scaffold_13 . repeat_region 327509 327540 . ? . description=trf scaffold_13 . repeat_region 327765 327772 . ? . description=dust scaffold_13 . biological_region 329478 329481 0.999 - . logic_name=eponine scaffold_13 . biological_region 330308 330311 0.999 + . logic_name=eponine scaffold_13 . biological_region 331056 331060 0.999 + . logic_name=eponine scaffold_13 . repeat_region 331868 331882 . ? . description=dust scaffold_13 . biological_region 332922 332924 0.999 + . logic_name=eponine scaffold_13 . biological_region 332928 332934 0.999 - . logic_name=eponine scaffold_13 . biological_region 333679 333682 0.999 + . logic_name=eponine scaffold_13 . biological_region 333702 333706 0.999 + . logic_name=eponine scaffold_13 . biological_region 333748 333749 0.999 + . logic_name=eponine scaffold_13 . repeat_region 333782 333813 . ? . description=dust scaffold_13 . repeat_region 333783 333817 . ? . description=trf scaffold_13 . biological_region 333821 333822 0.999 - . logic_name=eponine scaffold_13 . biological_region 333902 333908 0.999 + . logic_name=eponine scaffold_13 . biological_region 334055 334059 0.999 - . logic_name=eponine scaffold_13 . biological_region 334572 334574 0.999 + . logic_name=eponine scaffold_13 . repeat_region 335108 335117 . ? . description=dust scaffold_13 . biological_region 336568 336570 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 328816 330592 . + . ID=Physo130873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130064;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 328816 330592 . + . ID=Physo130873;Parent=Physo130873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 328816 328919 . + 0 ID=Physo130873;Parent=Physo130873;rank=1 scaffold_13 . exon 328816 328919 . + . ID=Physo130873.1;Parent=Physo130873;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 328998 329165 . + 0 ID=Physo130873;Parent=Physo130873;rank=2 scaffold_13 . exon 328998 329165 . + . ID=Physo130873.2;Parent=Physo130873;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_13 . CDS 329241 329747 . + 0 ID=Physo130873;Parent=Physo130873;rank=3 scaffold_13 . exon 329241 329747 . + . ID=Physo130873.3;Parent=Physo130873;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_13 . CDS 329829 330121 . + 0 ID=Physo130873;Parent=Physo130873;rank=4 scaffold_13 . exon 329829 330121 . + . ID=Physo130873.4;Parent=Physo130873;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 330192 330592 . + 0 ID=Physo130873;Parent=Physo130873;rank=5 scaffold_13 . exon 330192 330592 . + . ID=Physo130873.5;Parent=Physo130873;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 ensembl protein_coding_gene 333634 336089 . + . ID=Physo130874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130065;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 333634 336089 . + . ID=Physo130874;Parent=Physo130874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 333634 335047 . + . ID=Physo130874.1;Parent=Physo130874;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 333698 335047 . + 0 ID=Physo130874;Parent=Physo130874;rank=1 scaffold_13 . CDS 335128 335534 . + 0 ID=Physo130874;Parent=Physo130874;rank=2 scaffold_13 . exon 335128 335534 . + . ID=Physo130874.2;Parent=Physo130874;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 335615 335756 . + 0 ID=Physo130874;Parent=Physo130874;rank=3 scaffold_13 . exon 335615 336089 . + . ID=Physo130874.3;Parent=Physo130874;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_13 ensembl protein_coding_gene 336332 341215 . + . ID=Physo130875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130066;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 336332 341215 . + . ID=Physo130875;Parent=Physo130875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 336332 341215 . + 0 ID=Physo130875;Parent=Physo130875;rank=1 scaffold_13 . exon 336332 341215 . + . ID=Physo130875.1;Parent=Physo130875;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 341490 342170 . + . ID=Physo130876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130067;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 341490 342170 . + . ID=Physo130876;Parent=Physo130876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 341490 342170 . + 0 ID=Physo130876;Parent=Physo130876;rank=1 scaffold_13 . exon 341490 342170 . + . ID=Physo130876.1;Parent=Physo130876;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 345744 347130 . + . ID=Physo130877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130068;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 345744 347130 . + . ID=Physo130877;Parent=Physo130877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 345744 345812 . + 0 ID=Physo130877;Parent=Physo130877;rank=1 scaffold_13 . exon 345744 345812 . + . ID=Physo130877.1;Parent=Physo130877;constitutive=1;rank=1 scaffold_13 . CDS 345933 346445 . + 0 ID=Physo130877;Parent=Physo130877;rank=2 scaffold_13 . exon 345933 346445 . + . ID=Physo130877.2;Parent=Physo130877;constitutive=1;rank=2 scaffold_13 . CDS 346490 346785 . + 0 ID=Physo130877;Parent=Physo130877;rank=3 scaffold_13 . exon 346490 346785 . + . ID=Physo130877.3;Parent=Physo130877;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 346830 347130 . + 0 ID=Physo130877;Parent=Physo130877;rank=4 scaffold_13 . repeat_region 346571 346594 . ? . description=trf scaffold_13 . biological_region 347838 347838 0.999 - . logic_name=eponine scaffold_13 . repeat_region 348651 348835 . + . description=Polinton-1_PI scaffold_13 . repeat_region 348850 349033 . + . description=Polinton-1_PI scaffold_13 . repeat_region 352207 352223 . ? . description=dust scaffold_13 . biological_region 352261 352264 0.999 + . logic_name=eponine scaffold_13 . exon 346830 347130 . + . ID=Physo130877.4;Parent=Physo130877;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 ensembl protein_coding_gene 352656 353006 . + . ID=Physo130878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130069;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 352656 353006 . + . ID=Physo130878;Parent=Physo130878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 352656 353006 . + 0 ID=Physo130878;Parent=Physo130878;rank=1 scaffold_13 . exon 352656 353006 . + . ID=Physo130878.1;Parent=Physo130878;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 353224 354986 . - . ID=Physo130879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130070;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 353224 354986 . - . ID=Physo130879;Parent=Physo130879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 353224 353236 . - 0 ID=Physo130879;Parent=Physo130879;rank=5 scaffold_13 . exon 353224 353236 . - . ID=Physo130879.5;Parent=Physo130879;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 353622 353992 . - 0 ID=Physo130879;Parent=Physo130879;rank=4 scaffold_13 . exon 353622 353992 . - . ID=Physo130879.4;Parent=Physo130879;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_13 . CDS 354039 354141 . - 0 ID=Physo130879;Parent=Physo130879;rank=3 scaffold_13 . exon 354039 354141 . - . ID=Physo130879.3;Parent=Physo130879;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 354255 354623 . - 0 ID=Physo130879;Parent=Physo130879;rank=2 scaffold_13 . exon 354255 354623 . - . ID=Physo130879.2;Parent=Physo130879;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_13 . CDS 354739 354986 . - 0 ID=Physo130879;Parent=Physo130879;rank=1 scaffold_13 . exon 354739 354986 . - . ID=Physo130879.1;Parent=Physo130879;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 357542 359504 . - . ID=Physo130880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130071;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 357542 359504 . - . ID=Physo130880;Parent=Physo130880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 357542 357718 . - 0 ID=Physo130880;Parent=Physo130880;rank=5 scaffold_13 . exon 357542 357718 . - . ID=Physo130880.5;Parent=Physo130880;constitutive=1;rank=5 scaffold_13 . CDS 357785 357998 . - 0 ID=Physo130880;Parent=Physo130880;rank=4 scaffold_13 . exon 357785 357998 . - . ID=Physo130880.4;Parent=Physo130880;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 358080 358521 . - 0 ID=Physo130880;Parent=Physo130880;rank=3 scaffold_13 . exon 358080 358521 . - . ID=Physo130880.3;Parent=Physo130880;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_13 . CDS 358630 359195 . - 0 ID=Physo130880;Parent=Physo130880;rank=2 scaffold_13 . exon 358630 359195 . - . ID=Physo130880.2;Parent=Physo130880;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 359473 359504 . - 0 ID=Physo130880;Parent=Physo130880;rank=1 scaffold_13 . exon 359473 359504 . - . ID=Physo130880.1;Parent=Physo130880;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 360313 362578 . + . ID=Physo130881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130072;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 360313 362578 . + . ID=Physo130881;Parent=Physo130881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 360313 360387 . + 0 ID=Physo130881;Parent=Physo130881;rank=1 scaffold_13 . exon 360313 360387 . + . ID=Physo130881.1;Parent=Physo130881;constitutive=1;rank=1 scaffold_13 . CDS 360445 360482 . + 0 ID=Physo130881;Parent=Physo130881;rank=2 scaffold_13 . exon 360445 360482 . + . ID=Physo130881.2;Parent=Physo130881;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 360920 361975 . + 0 ID=Physo130881;Parent=Physo130881;rank=3 scaffold_13 . exon 360920 361975 . + . ID=Physo130881.3;Parent=Physo130881;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_13 . CDS 362005 362374 . + 0 ID=Physo130881;Parent=Physo130881;rank=4 scaffold_13 . exon 362005 362374 . + . ID=Physo130881.4;Parent=Physo130881;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 362504 362578 . + 0 ID=Physo130881;Parent=Physo130881;rank=5 scaffold_13 . exon 362504 362578 . + . ID=Physo130881.5;Parent=Physo130881;constitutive=1;rank=5 scaffold_13 . repeat_region 366846 366854 . ? . description=dust scaffold_13 . repeat_region 367386 367395 . ? . description=dust scaffold_13 . repeat_region 368392 368441 . ? . description=trf scaffold_13 . repeat_region 369361 369394 . ? . description=trf scaffold_13 . biological_region 371434 371438 0.999 - . logic_name=eponine scaffold_13 . biological_region 371860 371863 0.999 - . logic_name=eponine scaffold_13 . biological_region 371869 371870 0.999 - . logic_name=eponine scaffold_13 . repeat_region 373053 373072 . ? . description=dust scaffold_13 . repeat_region 373053 373077 . ? . description=trf scaffold_13 . repeat_region 373409 373524 . + . description=Gypsy-1-LTR_PI scaffold_13 . repeat_region 373534 379400 . + . description=Gypsy-2-I_PI-int scaffold_13 ensembl protein_coding_gene 369228 371725 . - . ID=Physo130882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130073;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 369228 371725 . - . ID=Physo130882;Parent=Physo130882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 369228 369689 . - 0 ID=Physo130882;Parent=Physo130882;rank=5 scaffold_13 . exon 369228 369689 . - . ID=Physo130882.5;Parent=Physo130882;constitutive=1;rank=5 scaffold_13 . CDS 369948 370050 . - 0 ID=Physo130882;Parent=Physo130882;rank=4 scaffold_13 . exon 369948 370050 . - . ID=Physo130882.4;Parent=Physo130882;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 370215 370983 . - 0 ID=Physo130882;Parent=Physo130882;rank=3 scaffold_13 . exon 370215 370983 . - . ID=Physo130882.3;Parent=Physo130882;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_13 . CDS 371175 371572 . - 0 ID=Physo130882;Parent=Physo130882;rank=2 scaffold_13 . exon 371175 371572 . - . ID=Physo130882.2;Parent=Physo130882;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 371604 371725 . - 0 ID=Physo130882;Parent=Physo130882;rank=1 scaffold_13 . exon 371604 371725 . - . ID=Physo130882.1;Parent=Physo130882;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 372970 376547 . + . ID=Physo130883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130074;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 372970 376547 . + . ID=Physo130883;Parent=Physo130883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 372970 373056 . + 0 ID=Physo130883;Parent=Physo130883;rank=1 scaffold_13 . exon 372970 373056 . + . ID=Physo130883.1;Parent=Physo130883;constitutive=1;rank=1 scaffold_13 . CDS 373557 374385 . + 0 ID=Physo130883;Parent=Physo130883;rank=2 scaffold_13 . exon 373557 374385 . + . ID=Physo130883.2;Parent=Physo130883;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 374514 374742 . + 0 ID=Physo130883;Parent=Physo130883;rank=3 scaffold_13 . exon 374514 374742 . + . ID=Physo130883.3;Parent=Physo130883;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_13 . CDS 374843 374887 . + 0 ID=Physo130883;Parent=Physo130883;rank=4 scaffold_13 . exon 374843 374887 . + . ID=Physo130883.4;Parent=Physo130883;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_13 . CDS 374937 376545 . + 0 ID=Physo130883;Parent=Physo130883;rank=5 scaffold_13 . exon 374937 376547 . + . ID=Physo130883.5;Parent=Physo130883;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_13 ensembl protein_coding_gene 376714 377595 . + . ID=Physo108514;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_130005;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 376714 377595 . + . ID=Physo108514;Parent=Physo108514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 376714 377595 . + 0 ID=Physo108514;Parent=Physo108514;rank=1 scaffold_13 . exon 376714 377595 . + . ID=Physo108514.1;Parent=Physo108514;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 382658 383188 . - . ID=Physo108515;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_130006;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 382658 383188 . - . ID=Physo108515;Parent=Physo108515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 382658 383188 . - . ID=Physo108515.1;Parent=Physo108515;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 382659 383186 . - 0 ID=Physo108515;Parent=Physo108515;rank=1 scaffold_13 ensembl protein_coding_gene 378487 379907 . - . ID=Physo130885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130076;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 378487 379907 . - . ID=Physo130885;Parent=Physo130885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 378487 378627 . - 0 ID=Physo130885;Parent=Physo130885;rank=3 scaffold_13 . exon 378487 378627 . - . ID=Physo130885.3;Parent=Physo130885;constitutive=1;rank=3 scaffold_13 . CDS 378658 379237 . - 0 ID=Physo130885;Parent=Physo130885;rank=2 scaffold_13 . exon 378658 379237 . - . ID=Physo130885.2;Parent=Physo130885;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 379267 379907 . - 0 ID=Physo130885;Parent=Physo130885;rank=1 scaffold_13 . exon 379267 379907 . - . ID=Physo130885.1;Parent=Physo130885;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 381390 382570 . + . ID=Physo130886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130077;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 381390 382570 . + . ID=Physo130886;Parent=Physo130886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 381390 381451 . + 0 ID=Physo130886;Parent=Physo130886;rank=1 scaffold_13 . exon 381390 381451 . + . ID=Physo130886.1;Parent=Physo130886;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 381523 382570 . + 0 ID=Physo130886;Parent=Physo130886;rank=2 scaffold_13 . exon 381523 382570 . + . ID=Physo130886.2;Parent=Physo130886;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 ensembl protein_coding_gene 383500 384712 . + . ID=Physo130888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130079;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 383500 384712 . + . ID=Physo130888;Parent=Physo130888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 383500 384600 . + 0 ID=Physo130888;Parent=Physo130888;rank=1 scaffold_13 . exon 383500 384600 . + . ID=Physo130888.1;Parent=Physo130888;constitutive=1;rank=1 scaffold_13 . CDS 384647 384712 . + 0 ID=Physo130888;Parent=Physo130888;rank=2 scaffold_13 . exon 384647 384712 . + . ID=Physo130888.2;Parent=Physo130888;constitutive=1;rank=2 scaffold_13 . biological_region 390034 390035 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 390064 390825 . + . ID=Physo108516;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_130007;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 390064 390825 . + . ID=Physo108516;Parent=Physo108516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 390064 390810 . + 0 ID=Physo108516;Parent=Physo108516;rank=1 scaffold_13 . exon 390064 390825 . + . ID=Physo108516.1;Parent=Physo108516;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_13 ensembl protein_coding_gene 387184 389320 . + . ID=Physo130889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130080;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 387184 389320 . + . ID=Physo130889;Parent=Physo130889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 387184 389150 . + 0 ID=Physo130889;Parent=Physo130889;rank=1 scaffold_13 . exon 387184 389150 . + . ID=Physo130889.1;Parent=Physo130889;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 389224 389320 . + 0 ID=Physo130889;Parent=Physo130889;rank=2 scaffold_13 . exon 389224 389320 . + . ID=Physo130889.2;Parent=Physo130889;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 ensembl protein_coding_gene 393518 394038 . + . ID=Physo130891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130082;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 393518 394038 . + . ID=Physo130891;Parent=Physo130891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 393518 393741 . + 0 ID=Physo130891;Parent=Physo130891;rank=1 scaffold_13 . exon 393518 393741 . + . ID=Physo130891.1;Parent=Physo130891;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 393897 394038 . + 0 ID=Physo130891;Parent=Physo130891;rank=2 scaffold_13 . exon 393897 394038 . + . ID=Physo130891.2;Parent=Physo130891;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . repeat_region 398392 398399 . ? . description=dust scaffold_13 . repeat_region 398560 398567 . ? . description=dust scaffold_13 . repeat_region 398603 398614 . ? . description=dust scaffold_13 . repeat_region 399394 399401 . ? . description=dust scaffold_13 . repeat_region 399991 399999 . ? . description=dust scaffold_13 . repeat_region 401544 401554 . ? . description=dust scaffold_13 . repeat_region 401729 401760 . ? . description=dust scaffold_13 . repeat_region 401858 401916 . ? . description=trf scaffold_13 . repeat_region 402552 402559 . ? . description=dust scaffold_13 ensembl protein_coding_gene 402568 402972 . - . ID=Physo130892;biotype=protein_coding;description=PsAvh259 [Source:UniProtKB/TrEMBL%3BAcc:E0W4S4];external_name=estExt_fgenesh1_pg.C_130083;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 402568 402972 . - . ID=Physo130892;Parent=Physo130892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 402568 402972 . - 0 ID=Physo130892;Parent=Physo130892;rank=1 scaffold_13 . exon 402568 402972 . - . ID=Physo130892.1;Parent=Physo130892;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 403767 405224 . - . ID=Physo130893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130084;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 403767 405224 . - . ID=Physo130893;Parent=Physo130893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 403767 405224 . - 0 ID=Physo130893;Parent=Physo130893;rank=1 scaffold_13 . exon 403767 405224 . - . ID=Physo130893.1;Parent=Physo130893;constitutive=1;rank=1 scaffold_13 . biological_region 409182 409185 0.999 + . logic_name=eponine scaffold_13 . repeat_region 417655 417663 . ? . description=dust scaffold_13 . repeat_region 419413 419420 . ? . description=dust scaffold_13 . repeat_region 421453 421461 . ? . description=dust scaffold_13 ensembl protein_coding_gene 424098 425421 . - . ID=Physo130894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130085;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 424098 425421 . - . ID=Physo130894;Parent=Physo130894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 424098 424126 . - 0 ID=Physo130894;Parent=Physo130894;rank=3 scaffold_13 . exon 424098 424126 . - . ID=Physo130894.3;Parent=Physo130894;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 424162 424938 . - 0 ID=Physo130894;Parent=Physo130894;rank=2 scaffold_13 . exon 424162 424938 . - . ID=Physo130894.2;Parent=Physo130894;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 424968 425421 . - 0 ID=Physo130894;Parent=Physo130894;rank=1 scaffold_13 . exon 424968 425421 . - . ID=Physo130894.1;Parent=Physo130894;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . biological_region 430167 430174 0.999 + . logic_name=eponine scaffold_13 . biological_region 430205 430208 0.999 - . logic_name=eponine scaffold_13 . biological_region 430274 430279 0.999 - . logic_name=eponine scaffold_13 . biological_region 432193 432196 0.999 - . logic_name=eponine scaffold_13 . biological_region 434336 434340 0.999 + . logic_name=eponine scaffold_13 . biological_region 434393 434396 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 427936 429619 . + . ID=Physo130895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130086;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 427936 429619 . + . ID=Physo130895;Parent=Physo130895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 427936 428712 . + 0 ID=Physo130895;Parent=Physo130895;rank=1 scaffold_13 . exon 427936 428712 . + . ID=Physo130895.1;Parent=Physo130895;constitutive=1;rank=1 scaffold_13 . CDS 428783 429619 . + 0 ID=Physo130895;Parent=Physo130895;rank=2 scaffold_13 . exon 428783 429619 . + . ID=Physo130895.2;Parent=Physo130895;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 434569 435297 . + . ID=Physo130896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130087;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 434569 435297 . + . ID=Physo130896;Parent=Physo130896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 434569 435297 . + 0 ID=Physo130896;Parent=Physo130896;rank=1 scaffold_13 . exon 434569 435297 . + . ID=Physo130896.1;Parent=Physo130896;constitutive=1;rank=1 scaffold_13 . repeat_region 436218 436248 . ? . description=dust scaffold_13 . repeat_region 439189 439242 . ? . description=trf scaffold_13 . repeat_region 439939 439962 . ? . description=trf scaffold_13 . repeat_region 440169 440176 . ? . description=dust scaffold_13 . repeat_region 441748 441762 . ? . description=dust scaffold_13 . repeat_region 443375 443414 . ? . description=dust scaffold_13 . repeat_region 443381 443434 . + . description=(CATG)n scaffold_13 . repeat_region 443384 443418 . ? . description=trf scaffold_13 ensembl protein_coding_gene 439079 440012 . - . ID=Physo130897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130088;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 439079 440012 . - . ID=Physo130897;Parent=Physo130897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 439079 439471 . - 0 ID=Physo130897;Parent=Physo130897;rank=2 scaffold_13 . exon 439079 439471 . - . ID=Physo130897.2;Parent=Physo130897;constitutive=1;rank=2 scaffold_13 . CDS 439570 439998 . - 0 ID=Physo130897;Parent=Physo130897;rank=1 scaffold_13 . exon 439570 440012 . - . ID=Physo130897.1;Parent=Physo130897;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 ensembl protein_coding_gene 444361 446178 . + . ID=Physo130898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130089;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 444361 446178 . + . ID=Physo130898;Parent=Physo130898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 444361 446178 . + 0 ID=Physo130898;Parent=Physo130898;rank=1 scaffold_13 . exon 444361 446178 . + . ID=Physo130898.1;Parent=Physo130898;constitutive=1;rank=1 scaffold_13 . biological_region 445750 445751 0.999 + . logic_name=eponine scaffold_13 . biological_region 446304 446306 0.999 + . logic_name=eponine scaffold_13 . biological_region 452788 452789 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 450077 451363 . + . ID=Physo130899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130090;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 450077 451363 . + . ID=Physo130899;Parent=Physo130899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 450077 451363 . + 0 ID=Physo130899;Parent=Physo130899;rank=1 scaffold_13 . exon 450077 451363 . + . ID=Physo130899.1;Parent=Physo130899;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 452020 453371 . + . ID=Physo130900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130091;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 452020 453371 . + . ID=Physo130900;Parent=Physo130900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 452020 453371 . + . ID=Physo130900.1;Parent=Physo130900;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 452037 453371 . + 0 ID=Physo130900;Parent=Physo130900;rank=1 scaffold_13 . repeat_region 461103 461255 . ? . description=trf scaffold_13 . repeat_region 463129 463154 . ? . description=dust scaffold_13 . repeat_region 463129 463154 . ? . description=trf scaffold_13 . repeat_region 464783 465088 . - . description=GypsyPi-1c_LTR scaffold_13 ensembl protein_coding_gene 455944 457120 . + . ID=Physo130901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130092;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 455944 457120 . + . ID=Physo130901;Parent=Physo130901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 455944 457120 . + . ID=Physo130901.1;Parent=Physo130901;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 455949 457088 . + 0 ID=Physo130901;Parent=Physo130901;rank=1 scaffold_13 ensembl protein_coding_gene 457267 460046 . - . ID=Physo130902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130093;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 457267 460046 . - . ID=Physo130902;Parent=Physo130902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 457267 458650 . - 0 ID=Physo130902;Parent=Physo130902;rank=2 scaffold_13 . exon 457267 458650 . - . ID=Physo130902.2;Parent=Physo130902;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 458872 460046 . - 0 ID=Physo130902;Parent=Physo130902;rank=1 scaffold_13 . exon 458872 460046 . - . ID=Physo130902.1;Parent=Physo130902;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . repeat_region 466595 466672 . - . description=GypsyPi-1c_I-int scaffold_13 . biological_region 467298 467300 0.999 - . logic_name=eponine scaffold_13 . repeat_region 467535 469743 . - . description=GypsyPi-1c_I-int scaffold_13 . biological_region 469236 469238 0.999 - . logic_name=eponine scaffold_13 . biological_region 475049 475054 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 468691 469656 . - . ID=Physo130903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130094;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 468691 469656 . - . ID=Physo130903;Parent=Physo130903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 468691 469223 . - 0 ID=Physo130903;Parent=Physo130903;rank=2 scaffold_13 . exon 468691 469223 . - . ID=Physo130903.2;Parent=Physo130903;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 469392 469656 . - 0 ID=Physo130903;Parent=Physo130903;rank=1 scaffold_13 . exon 469392 469656 . - . ID=Physo130903.1;Parent=Physo130903;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 470388 471714 . - . ID=Physo130904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130095;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 470388 471714 . - . ID=Physo130904;Parent=Physo130904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 470388 470822 . - . ID=Physo130904.4;Parent=Physo130904;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_13 . CDS 470463 470822 . - 0 ID=Physo130904;Parent=Physo130904;rank=4 scaffold_13 . CDS 470854 471225 . - 0 ID=Physo130904;Parent=Physo130904;rank=3 scaffold_13 . exon 470854 471225 . - . ID=Physo130904.3;Parent=Physo130904;constitutive=1;rank=3 scaffold_13 . CDS 471320 471448 . - 0 ID=Physo130904;Parent=Physo130904;rank=2 scaffold_13 . exon 471320 471448 . - . ID=Physo130904.2;Parent=Physo130904;constitutive=1;rank=2 scaffold_13 . CDS 471476 471700 . - 0 ID=Physo130904;Parent=Physo130904;rank=1 scaffold_13 . exon 471476 471714 . - . ID=Physo130904.1;Parent=Physo130904;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . repeat_region 477774 477786 . ? . description=dust scaffold_13 . repeat_region 478505 478667 . ? . description=trf scaffold_13 . repeat_region 481034 481071 . ? . description=trf scaffold_13 . repeat_region 481034 481106 . ? . description=dust scaffold_13 . repeat_region 481070 481106 . ? . description=trf scaffold_13 ensembl protein_coding_gene 480885 481795 . + . ID=Physo130905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130096;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 480885 481795 . + . ID=Physo130905;Parent=Physo130905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 480885 481350 . + 0 ID=Physo130905;Parent=Physo130905;rank=1 scaffold_13 . exon 480885 481350 . + . ID=Physo130905.1;Parent=Physo130905;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 481506 481795 . + 0 ID=Physo130905;Parent=Physo130905;rank=2 scaffold_13 . exon 481506 481795 . + . ID=Physo130905.2;Parent=Physo130905;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 482214 483475 . - . ID=Physo130906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130097;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 482214 483475 . - . ID=Physo130906;Parent=Physo130906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 482214 482275 . - 0 ID=Physo130906;Parent=Physo130906;rank=3 scaffold_13 . exon 482214 482275 . - . ID=Physo130906.3;Parent=Physo130906;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 482441 483319 . - 0 ID=Physo130906;Parent=Physo130906;rank=2 scaffold_13 . exon 482441 483319 . - . ID=Physo130906.2;Parent=Physo130906;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 483373 483475 . - 0 ID=Physo130906;Parent=Physo130906;rank=1 scaffold_13 . exon 483373 483475 . - . ID=Physo130906.1;Parent=Physo130906;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 484858 492818 . - . ID=Physo130907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130098;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 484858 492818 . - . ID=Physo130907;Parent=Physo130907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 484858 485361 . - . ID=Physo130907.13;Parent=Physo130907;constitutive=1;ensembl_end_phase=-1;rank=13 scaffold_13 . CDS 485131 485361 . - 0 ID=Physo130907;Parent=Physo130907;rank=13 scaffold_13 . CDS 485394 485765 . - 0 ID=Physo130907;Parent=Physo130907;rank=12 scaffold_13 . CDS 485941 486136 . - 0 ID=Physo130907;Parent=Physo130907;rank=11 scaffold_13 . CDS 486302 487473 . - 0 ID=Physo130907;Parent=Physo130907;rank=10 scaffold_13 . CDS 487557 487973 . - 0 ID=Physo130907;Parent=Physo130907;rank=9 scaffold_13 . CDS 487997 488168 . - 0 ID=Physo130907;Parent=Physo130907;rank=8 scaffold_13 . CDS 488277 489052 . - 0 ID=Physo130907;Parent=Physo130907;rank=7 scaffold_13 . CDS 489160 490783 . - 0 ID=Physo130907;Parent=Physo130907;rank=6 scaffold_13 . CDS 490851 490998 . - 0 ID=Physo130907;Parent=Physo130907;rank=5 scaffold_13 . CDS 491152 491389 . - 0 ID=Physo130907;Parent=Physo130907;rank=4 scaffold_13 . CDS 491530 492222 . - 0 ID=Physo130907;Parent=Physo130907;rank=3 scaffold_13 . CDS 492287 492586 . - 0 ID=Physo130907;Parent=Physo130907;rank=2 scaffold_13 . CDS 492630 492818 . - 0 ID=Physo130907;Parent=Physo130907;rank=1 scaffold_13 . biological_region 485672 485674 0.999 - . logic_name=eponine scaffold_13 . biological_region 485818 485818 0.999 - . logic_name=eponine scaffold_13 . biological_region 486538 486540 0.999 - . logic_name=eponine scaffold_13 . biological_region 489374 489378 0.999 + . logic_name=eponine scaffold_13 . biological_region 490008 490010 0.999 + . logic_name=eponine scaffold_13 . biological_region 490122 490124 0.999 - . logic_name=eponine scaffold_13 . biological_region 490198 490203 0.999 - . logic_name=eponine scaffold_13 . biological_region 490200 490202 0.999 + . logic_name=eponine scaffold_13 . biological_region 490210 490216 0.999 - . logic_name=eponine scaffold_13 . biological_region 490813 490815 0.999 + . logic_name=eponine scaffold_13 . biological_region 490837 490842 0.999 - . logic_name=eponine scaffold_13 . biological_region 490856 490860 0.999 - . logic_name=eponine scaffold_13 . biological_region 490916 490917 0.999 - . logic_name=eponine scaffold_13 . biological_region 491763 491767 0.999 - . logic_name=eponine scaffold_13 . biological_region 491892 491892 0.999 - . logic_name=eponine scaffold_13 . biological_region 491965 491970 0.999 - . logic_name=eponine scaffold_13 . biological_region 491982 491984 0.999 - . logic_name=eponine scaffold_13 . exon 485394 485765 . - . ID=Physo130907.12;Parent=Physo130907;constitutive=1;rank=12 scaffold_13 . exon 485941 486136 . - . ID=Physo130907.11;Parent=Physo130907;constitutive=1;ensembl_phase=2;rank=11 scaffold_13 . exon 486302 487473 . - . ID=Physo130907.10;Parent=Physo130907;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_13 . exon 487557 487973 . - . ID=Physo130907.9;Parent=Physo130907;constitutive=1;rank=9 scaffold_13 . exon 487997 488168 . - . ID=Physo130907.8;Parent=Physo130907;constitutive=1;ensembl_phase=2;rank=8 scaffold_13 . exon 488277 489052 . - . ID=Physo130907.7;Parent=Physo130907;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_13 . exon 489160 490783 . - . ID=Physo130907.6;Parent=Physo130907;constitutive=1;ensembl_phase=2;rank=6 scaffold_13 . exon 490851 490998 . - . ID=Physo130907.5;Parent=Physo130907;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_13 . exon 491152 491389 . - . ID=Physo130907.4;Parent=Physo130907;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . exon 491530 492222 . - . ID=Physo130907.3;Parent=Physo130907;constitutive=1;rank=3 scaffold_13 . exon 492287 492586 . - . ID=Physo130907.2;Parent=Physo130907;constitutive=1;rank=2 scaffold_13 . exon 492630 492818 . - . ID=Physo130907.1;Parent=Physo130907;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 493902 495068 . + . ID=Physo130908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130099;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 493902 495068 . + . ID=Physo130908;Parent=Physo130908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 493902 495068 . + 0 ID=Physo130908;Parent=Physo130908;rank=1 scaffold_13 . exon 493902 495068 . + . ID=Physo130908.1;Parent=Physo130908;constitutive=1;rank=1 scaffold_13 . repeat_region 497781 497801 . ? . description=trf scaffold_13 . repeat_region 497781 497831 . ? . description=dust scaffold_13 . repeat_region 497800 497831 . ? . description=trf scaffold_13 . repeat_region 498296 499696 . + . description=Polinton-1_PI scaffold_13 . repeat_region 499699 505871 . + . description=Polinton-1_PI scaffold_13 . repeat_region 502978 502985 . ? . description=dust scaffold_13 ensembl protein_coding_gene 495332 496700 . + . ID=Physo130909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130100;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 495332 496700 . + . ID=Physo130909;Parent=Physo130909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 495332 496394 . + 0 ID=Physo130909;Parent=Physo130909;rank=1 scaffold_13 . exon 495332 496394 . + . ID=Physo130909.1;Parent=Physo130909;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 496524 496564 . + 0 ID=Physo130909;Parent=Physo130909;rank=2 scaffold_13 . exon 496524 496564 . + . ID=Physo130909.2;Parent=Physo130909;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 496626 496700 . + 0 ID=Physo130909;Parent=Physo130909;rank=3 scaffold_13 . exon 496626 496700 . + . ID=Physo130909.3;Parent=Physo130909;constitutive=1;rank=3 scaffold_13 ensembl protein_coding_gene 497963 499225 . + . ID=Physo130910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130101;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 497963 499225 . + . ID=Physo130910;Parent=Physo130910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 497963 499225 . + 0 ID=Physo130910;Parent=Physo130910;rank=1 scaffold_13 . exon 497963 499225 . + . ID=Physo130910.1;Parent=Physo130910;constitutive=1;rank=1 scaffold_13 . repeat_region 514922 514934 . ? . description=dust scaffold_13 . biological_region 516548 516551 0.999 - . logic_name=eponine scaffold_13 . repeat_region 518237 518257 . ? . description=trf scaffold_13 . biological_region 520128 520129 0.999 - . logic_name=eponine scaffold_13 . biological_region 524019 524024 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 516830 517831 . - . ID=Physo130911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130102;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 516830 517831 . - . ID=Physo130911;Parent=Physo130911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 516830 517258 . - 0 ID=Physo130911;Parent=Physo130911;rank=2 scaffold_13 . exon 516830 517258 . - . ID=Physo130911.2;Parent=Physo130911;constitutive=1;rank=2 scaffold_13 . CDS 517325 517831 . - 0 ID=Physo130911;Parent=Physo130911;rank=1 scaffold_13 . exon 517325 517831 . - . ID=Physo130911.1;Parent=Physo130911;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 518232 518931 . + . ID=Physo130912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130103;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 518232 518931 . + . ID=Physo130912;Parent=Physo130912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 518232 518931 . + . ID=Physo130912.1;Parent=Physo130912;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 518309 518728 . + 0 ID=Physo130912;Parent=Physo130912;rank=1 scaffold_13 ensembl protein_coding_gene 519510 520454 . + . ID=Physo130913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130104;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 519510 520454 . + . ID=Physo130913;Parent=Physo130913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 519510 519522 . + 0 ID=Physo130913;Parent=Physo130913;rank=1 scaffold_13 . exon 519510 519522 . + . ID=Physo130913.1;Parent=Physo130913;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 519763 520454 . + 0 ID=Physo130913;Parent=Physo130913;rank=2 scaffold_13 . exon 519763 520454 . + . ID=Physo130913.2;Parent=Physo130913;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 523159 523521 . + . ID=Physo130914;biotype=protein_coding;description=PsAvh218 [Source:UniProtKB/TrEMBL%3BAcc:E0W4S6];external_name=estExt_fgenesh1_pg.C_130105;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 523159 523521 . + . ID=Physo130914;Parent=Physo130914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 523159 523521 . + 0 ID=Physo130914;Parent=Physo130914;rank=1 scaffold_13 . exon 523159 523521 . + . ID=Physo130914.1;Parent=Physo130914;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 526716 527983 . - . ID=Physo130915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130106;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 526716 527983 . - . ID=Physo130915;Parent=Physo130915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 526716 527123 . - 0 ID=Physo130915;Parent=Physo130915;rank=4 scaffold_13 . exon 526716 527123 . - . ID=Physo130915.4;Parent=Physo130915;constitutive=1;rank=4 scaffold_13 . CDS 527191 527461 . - 0 ID=Physo130915;Parent=Physo130915;rank=3 scaffold_13 . exon 527191 527461 . - . ID=Physo130915.3;Parent=Physo130915;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 527522 527861 . - 0 ID=Physo130915;Parent=Physo130915;rank=2 scaffold_13 . exon 527522 527861 . - . ID=Physo130915.2;Parent=Physo130915;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 527917 527983 . - 0 ID=Physo130915;Parent=Physo130915;rank=1 scaffold_13 . exon 527917 527983 . - . ID=Physo130915.1;Parent=Physo130915;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . biological_region 537652 537654 0.999 + . logic_name=eponine scaffold_13 . repeat_region 542377 542384 . ? . description=dust scaffold_13 . biological_region 543702 543705 0.999 + . logic_name=eponine scaffold_13 . biological_region 543724 543726 0.999 + . logic_name=eponine scaffold_13 . biological_region 543798 543800 0.999 - . logic_name=eponine scaffold_13 . biological_region 543856 543858 0.999 + . logic_name=eponine scaffold_13 . repeat_region 544349 544618 . - . description=GypsyPi-1c_I-int scaffold_13 ensembl protein_coding_gene 536089 536628 . + . ID=Physo130916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130107;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 536089 536628 . + . ID=Physo130916;Parent=Physo130916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 536089 536628 . + 0 ID=Physo130916;Parent=Physo130916;rank=1 scaffold_13 . exon 536089 536628 . + . ID=Physo130916.1;Parent=Physo130916;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 538140 539031 . + . ID=Physo130917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130108;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 538140 539031 . + . ID=Physo130917;Parent=Physo130917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 538140 538225 . + 0 ID=Physo130917;Parent=Physo130917;rank=1 scaffold_13 . exon 538140 538225 . + . ID=Physo130917.1;Parent=Physo130917;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 538286 538556 . + 0 ID=Physo130917;Parent=Physo130917;rank=2 scaffold_13 . exon 538286 538556 . + . ID=Physo130917.2;Parent=Physo130917;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 538624 539031 . + 0 ID=Physo130917;Parent=Physo130917;rank=3 scaffold_13 . exon 538624 539031 . + . ID=Physo130917.3;Parent=Physo130917;constitutive=1;rank=3 scaffold_13 . repeat_region 544749 544780 . ? . description=trf scaffold_13 ensembl protein_coding_gene 544576 548711 . - . ID=Physo130918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130109;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 544576 548711 . - . ID=Physo130918;Parent=Physo130918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 544576 544582 . - 0 ID=Physo130918;Parent=Physo130918;rank=7 scaffold_13 . exon 544576 544582 . - . ID=Physo130918.7;Parent=Physo130918;constitutive=1;ensembl_phase=2;rank=7 scaffold_13 . CDS 544623 544882 . - 0 ID=Physo130918;Parent=Physo130918;rank=6 scaffold_13 . exon 544623 544882 . - . ID=Physo130918.6;Parent=Physo130918;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_13 . CDS 544939 545162 . - 0 ID=Physo130918;Parent=Physo130918;rank=5 scaffold_13 . exon 544939 545162 . - . ID=Physo130918.5;Parent=Physo130918;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 545278 545954 . - 0 ID=Physo130918;Parent=Physo130918;rank=4 scaffold_13 . exon 545278 545954 . - . ID=Physo130918.4;Parent=Physo130918;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 546084 546529 . - 0 ID=Physo130918;Parent=Physo130918;rank=3 scaffold_13 . exon 546084 546529 . - . ID=Physo130918.3;Parent=Physo130918;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 546551 547872 . - 0 ID=Physo130918;Parent=Physo130918;rank=2 scaffold_13 . exon 546551 547872 . - . ID=Physo130918.2;Parent=Physo130918;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 548174 548711 . - 0 ID=Physo130918;Parent=Physo130918;rank=1 scaffold_13 . exon 548174 548711 . - . ID=Physo130918.1;Parent=Physo130918;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . repeat_region 556458 556473 . ? . description=dust scaffold_13 . repeat_region 560721 560732 . ? . description=dust scaffold_13 . biological_region 563076 563076 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 554750 555836 . + . ID=Physo130919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130110;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 554750 555836 . + . ID=Physo130919;Parent=Physo130919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 554750 555836 . + . ID=Physo130919.1;Parent=Physo130919;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 554835 555836 . + 0 ID=Physo130919;Parent=Physo130919;rank=1 scaffold_13 ensembl protein_coding_gene 562897 568946 . - . ID=Physo130920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130111;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 562897 568946 . - . ID=Physo130920;Parent=Physo130920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 562897 563689 . - 0 ID=Physo130920;Parent=Physo130920;rank=4 scaffold_13 . exon 562897 563689 . - . ID=Physo130920.4;Parent=Physo130920;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 563886 567595 . - 0 ID=Physo130920;Parent=Physo130920;rank=3 scaffold_13 . exon 563886 567595 . - . ID=Physo130920.3;Parent=Physo130920;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 567658 567772 . - 0 ID=Physo130920;Parent=Physo130920;rank=2 scaffold_13 . CDS 567946 568946 . - 0 ID=Physo130920;Parent=Physo130920;rank=1 scaffold_13 . repeat_region 564465 569033 . - . description=GypsyPi-1c_I-int scaffold_13 . repeat_region 566950 567027 . ? . description=trf scaffold_13 . repeat_region 566952 567027 . ? . description=trf scaffold_13 . repeat_region 566982 567052 . ? . description=trf scaffold_13 . repeat_region 567033 567200 . ? . description=trf scaffold_13 . repeat_region 569034 569329 . - . description=GypsyPi-1c_LTR scaffold_13 . repeat_region 569448 569470 . ? . description=trf scaffold_13 . exon 567658 567772 . - . ID=Physo130920.2;Parent=Physo130920;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . exon 567946 568946 . - . ID=Physo130920.1;Parent=Physo130920;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 570390 571627 . - . ID=Physo130921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130112;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 570390 571627 . - . ID=Physo130921;Parent=Physo130921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 570390 570773 . - 0 ID=Physo130921;Parent=Physo130921;rank=3 scaffold_13 . exon 570390 570773 . - . ID=Physo130921.3;Parent=Physo130921;constitutive=1;rank=3 scaffold_13 . CDS 570884 570968 . - 0 ID=Physo130921;Parent=Physo130921;rank=2 scaffold_13 . exon 570884 570968 . - . ID=Physo130921.2;Parent=Physo130921;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 571116 571627 . - 0 ID=Physo130921;Parent=Physo130921;rank=1 scaffold_13 . exon 571116 571627 . - . ID=Physo130921.1;Parent=Physo130921;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 573387 573926 . + . ID=Physo130922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130113;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 573387 573926 . + . ID=Physo130922;Parent=Physo130922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 573387 573926 . + 0 ID=Physo130922;Parent=Physo130922;rank=1 scaffold_13 . exon 573387 573926 . + . ID=Physo130922.1;Parent=Physo130922;constitutive=1;rank=1 scaffold_13 . repeat_region 574525 574532 . ? . description=dust scaffold_13 . repeat_region 575444 575457 . ? . description=dust scaffold_13 . repeat_region 577607 577615 . ? . description=dust scaffold_13 . biological_region 577679 577682 0.999 + . logic_name=eponine scaffold_13 . biological_region 577793 577797 0.999 - . logic_name=eponine scaffold_13 . biological_region 577823 577824 0.999 - . logic_name=eponine scaffold_13 . biological_region 577831 577836 0.999 + . logic_name=eponine scaffold_13 . biological_region 577878 577880 0.999 + . logic_name=eponine scaffold_13 . repeat_region 577879 577935 . ? . description=dust scaffold_13 . biological_region 577909 577913 0.999 - . logic_name=eponine scaffold_13 . biological_region 577945 577948 0.999 - . logic_name=eponine scaffold_13 . repeat_region 578528 578545 . ? . description=dust scaffold_13 . biological_region 578699 578702 0.999 + . logic_name=eponine scaffold_13 . biological_region 578792 578793 0.999 - . logic_name=eponine scaffold_13 . repeat_region 579739 579746 . ? . description=dust scaffold_13 . biological_region 580265 580266 0.999 + . logic_name=eponine scaffold_13 . biological_region 580312 580312 0.999 + . logic_name=eponine scaffold_13 . biological_region 581102 581103 0.999 + . logic_name=eponine scaffold_13 . biological_region 581130 581132 0.999 + . logic_name=eponine scaffold_13 . repeat_region 583645 583652 . ? . description=dust scaffold_13 . repeat_region 583759 583770 . ? . description=dust scaffold_13 ensembl protein_coding_gene 578746 578955 . - . ID=Physo113233;biotype=protein_coding;external_name=estExt_Genewise1.C_130016;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 578746 578955 . - . ID=Physo113233;Parent=Physo113233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 578746 578955 . - . ID=Physo113233.1;Parent=Physo113233;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 578748 578843 . - 0 ID=Physo113233;Parent=Physo113233;rank=1 scaffold_13 ensembl protein_coding_gene 580689 583556 . - . ID=Physo113238;biotype=protein_coding;external_name=estExt_Genewise1.C_130021;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 580689 583556 . - . ID=Physo113238;Parent=Physo113238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 580689 580853 . - 0 ID=Physo113238;Parent=Physo113238;rank=3 scaffold_13 . exon 580689 580853 . - . ID=Physo113238.3;Parent=Physo113238;constitutive=1;rank=3 scaffold_13 . CDS 582580 583319 . - 0 ID=Physo113238;Parent=Physo113238;rank=2 scaffold_13 . exon 582580 583319 . - . ID=Physo113238.2;Parent=Physo113238;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 583448 583556 . - 0 ID=Physo113238;Parent=Physo113238;rank=1 scaffold_13 . exon 583448 583556 . - . ID=Physo113238.1;Parent=Physo113238;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 577654 578399 . + . ID=Physo130923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130114;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 577654 578399 . + . ID=Physo130923;Parent=Physo130923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 577654 578174 . + 0 ID=Physo130923;Parent=Physo130923;rank=1 scaffold_13 . exon 577654 578174 . + . ID=Physo130923.1;Parent=Physo130923;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 578243 578399 . + 0 ID=Physo130923;Parent=Physo130923;rank=2 scaffold_13 . exon 578243 578399 . + . ID=Physo130923.2;Parent=Physo130923;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 ensembl protein_coding_gene 585023 586774 . + . ID=Physo130926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130117;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 585023 586774 . + . ID=Physo130926;Parent=Physo130926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 585023 586774 . + 0 ID=Physo130926;Parent=Physo130926;rank=1 scaffold_13 . exon 585023 586774 . + . ID=Physo130926.1;Parent=Physo130926;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 587298 588640 . + . ID=Physo130927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130118;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 587298 588640 . + . ID=Physo130927;Parent=Physo130927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 587298 587819 . + 0 ID=Physo130927;Parent=Physo130927;rank=1 scaffold_13 . exon 587298 587819 . + . ID=Physo130927.1;Parent=Physo130927;constitutive=1;rank=1 scaffold_13 . CDS 587888 588640 . + 0 ID=Physo130927;Parent=Physo130927;rank=2 scaffold_13 . exon 587888 588640 . + . ID=Physo130927.2;Parent=Physo130927;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 589906 590334 . - . ID=Physo130928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130119;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 589906 590334 . - . ID=Physo130928;Parent=Physo130928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 589906 590334 . - 0 ID=Physo130928;Parent=Physo130928;rank=1 scaffold_13 . exon 589906 590334 . - . ID=Physo130928.1;Parent=Physo130928;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 593982 594881 . + . ID=Physo130929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130120;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 593982 594881 . + . ID=Physo130929;Parent=Physo130929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 593982 594881 . + 0 ID=Physo130929;Parent=Physo130929;rank=1 scaffold_13 . exon 593982 594881 . + . ID=Physo130929.1;Parent=Physo130929;constitutive=1;rank=1 scaffold_13 . repeat_region 594128 594155 . ? . description=trf scaffold_13 . repeat_region 594237 594414 . + . description=(CGA)n scaffold_13 . repeat_region 594367 594476 . ? . description=trf scaffold_13 . repeat_region 594367 594479 . ? . description=trf scaffold_13 . repeat_region 594376 594552 . + . description=(CTA)n scaffold_13 . repeat_region 594897 594931 . ? . description=dust scaffold_13 . repeat_region 594901 594931 . ? . description=trf scaffold_13 . biological_region 595360 595371 0.999 + . logic_name=eponine scaffold_13 . repeat_region 595361 595451 . ? . description=dust scaffold_13 . repeat_region 595384 595460 . ? . description=trf scaffold_13 . biological_region 595399 595401 0.999 + . logic_name=eponine scaffold_13 . repeat_region 595400 595468 . ? . description=trf scaffold_13 . repeat_region 595400 595487 . + . description=(TCG)n scaffold_13 . biological_region 595481 595488 0.999 - . logic_name=eponine scaffold_13 . biological_region 600183 600186 0.999 - . logic_name=eponine scaffold_13 . biological_region 601678 601681 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 595936 600177 . - . ID=Physo130930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130121;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 595936 600177 . - . ID=Physo130930;Parent=Physo130930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 595936 596403 . - 0 ID=Physo130930;Parent=Physo130930;rank=7 scaffold_13 . exon 595936 596403 . - . ID=Physo130930.7;Parent=Physo130930;constitutive=1;rank=7 scaffold_13 . CDS 596465 596759 . - 0 ID=Physo130930;Parent=Physo130930;rank=6 scaffold_13 . exon 596465 596759 . - . ID=Physo130930.6;Parent=Physo130930;constitutive=1;ensembl_phase=2;rank=6 scaffold_13 . CDS 597076 598187 . - 0 ID=Physo130930;Parent=Physo130930;rank=5 scaffold_13 . exon 597076 598187 . - . ID=Physo130930.5;Parent=Physo130930;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_13 . CDS 598322 598359 . - 0 ID=Physo130930;Parent=Physo130930;rank=4 scaffold_13 . exon 598322 598359 . - . ID=Physo130930.4;Parent=Physo130930;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 598461 598888 . - 0 ID=Physo130930;Parent=Physo130930;rank=3 scaffold_13 . exon 598461 598888 . - . ID=Physo130930.3;Parent=Physo130930;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 599232 599911 . - 0 ID=Physo130930;Parent=Physo130930;rank=2 scaffold_13 . exon 599232 599911 . - . ID=Physo130930.2;Parent=Physo130930;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 599950 600177 . - 0 ID=Physo130930;Parent=Physo130930;rank=1 scaffold_13 . exon 599950 600177 . - . ID=Physo130930.1;Parent=Physo130930;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 600910 603714 . + . ID=Physo130931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130122;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 600910 603714 . + . ID=Physo130931;Parent=Physo130931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 600910 602095 . + 0 ID=Physo130931;Parent=Physo130931;rank=1 scaffold_13 . exon 600910 602095 . + . ID=Physo130931.1;Parent=Physo130931;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 602216 602238 . + 0 ID=Physo130931;Parent=Physo130931;rank=2 scaffold_13 . exon 602216 602238 . + . ID=Physo130931.2;Parent=Physo130931;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 602374 602788 . + 0 ID=Physo130931;Parent=Physo130931;rank=3 scaffold_13 . exon 602374 602788 . + . ID=Physo130931.3;Parent=Physo130931;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . CDS 602827 603096 . + 0 ID=Physo130931;Parent=Physo130931;rank=4 scaffold_13 . exon 602827 603096 . + . ID=Physo130931.4;Parent=Physo130931;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 603353 603714 . + 0 ID=Physo130931;Parent=Physo130931;rank=5 scaffold_13 . exon 603353 603714 . + . ID=Physo130931.5;Parent=Physo130931;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 ensembl protein_coding_gene 609357 612161 . + . ID=Physo130932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130123;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 609357 612161 . + . ID=Physo130932;Parent=Physo130932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 609357 610542 . + 0 ID=Physo130932;Parent=Physo130932;rank=1 scaffold_13 . exon 609357 610542 . + . ID=Physo130932.1;Parent=Physo130932;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 610663 610685 . + 0 ID=Physo130932;Parent=Physo130932;rank=2 scaffold_13 . exon 610663 610685 . + . ID=Physo130932.2;Parent=Physo130932;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 610821 611235 . + 0 ID=Physo130932;Parent=Physo130932;rank=3 scaffold_13 . exon 610821 611235 . + . ID=Physo130932.3;Parent=Physo130932;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . CDS 611274 611543 . + 0 ID=Physo130932;Parent=Physo130932;rank=4 scaffold_13 . exon 611274 611543 . + . ID=Physo130932.4;Parent=Physo130932;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 611800 612161 . + 0 ID=Physo130932;Parent=Physo130932;rank=5 scaffold_13 . exon 611800 612161 . + . ID=Physo130932.5;Parent=Physo130932;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . repeat_region 615772 615920 . ? . description=trf scaffold_13 . repeat_region 615797 615860 . ? . description=dust scaffold_13 . repeat_region 615929 616043 . ? . description=trf scaffold_13 . repeat_region 615957 616019 . ? . description=dust scaffold_13 . biological_region 617326 617331 0.999 + . logic_name=eponine scaffold_13 . biological_region 621090 621090 0.999 + . logic_name=eponine scaffold_13 . repeat_region 622341 622364 . ? . description=trf scaffold_13 . biological_region 622943 622946 0.999 + . logic_name=eponine scaffold_13 . biological_region 623011 623015 0.999 + . logic_name=eponine scaffold_13 . biological_region 623021 623023 0.999 + . logic_name=eponine scaffold_13 . biological_region 623057 623058 0.999 + . logic_name=eponine scaffold_13 . biological_region 623082 623085 0.999 + . logic_name=eponine scaffold_13 . biological_region 623095 623102 0.999 - . logic_name=eponine scaffold_13 . repeat_region 623531 623581 . ? . description=trf scaffold_13 . biological_region 623607 623609 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 613922 615334 . + . ID=Physo130933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130124;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 613922 615334 . + . ID=Physo130933;Parent=Physo130933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 613922 614269 . + 0 ID=Physo130933;Parent=Physo130933;rank=1 scaffold_13 . exon 613922 614269 . + . ID=Physo130933.1;Parent=Physo130933;constitutive=1;rank=1 scaffold_13 . CDS 614359 614787 . + 0 ID=Physo130933;Parent=Physo130933;rank=2 scaffold_13 . exon 614359 614787 . + . ID=Physo130933.2;Parent=Physo130933;constitutive=1;rank=2 scaffold_13 . CDS 614880 615141 . + 0 ID=Physo130933;Parent=Physo130933;rank=3 scaffold_13 . exon 614880 615141 . + . ID=Physo130933.3;Parent=Physo130933;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . CDS 615192 615334 . + 0 ID=Physo130933;Parent=Physo130933;rank=4 scaffold_13 . exon 615192 615334 . + . ID=Physo130933.4;Parent=Physo130933;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 ensembl protein_coding_gene 615660 616248 . + . ID=Physo130934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130125;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 615660 616248 . + . ID=Physo130934;Parent=Physo130934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 615660 615924 . + 0 ID=Physo130934;Parent=Physo130934;rank=1 scaffold_13 . exon 615660 615924 . + . ID=Physo130934.1;Parent=Physo130934;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 616093 616187 . + 0 ID=Physo130934;Parent=Physo130934;rank=2 scaffold_13 . exon 616093 616187 . + . ID=Physo130934.2;Parent=Physo130934;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 616240 616248 . + 0 ID=Physo130934;Parent=Physo130934;rank=3 scaffold_13 . exon 616240 616248 . + . ID=Physo130934.3;Parent=Physo130934;constitutive=1;rank=3 scaffold_13 ensembl protein_coding_gene 621638 623140 . - . ID=Physo130935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130126;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 621638 623140 . - . ID=Physo130935;Parent=Physo130935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 621638 621712 . - 0 ID=Physo130935;Parent=Physo130935;rank=4 scaffold_13 . exon 621638 621712 . - . ID=Physo130935.4;Parent=Physo130935;constitutive=1;rank=4 scaffold_13 . CDS 621805 622105 . - 0 ID=Physo130935;Parent=Physo130935;rank=3 scaffold_13 . exon 621805 622105 . - . ID=Physo130935.3;Parent=Physo130935;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 622150 622895 . - 0 ID=Physo130935;Parent=Physo130935;rank=2 scaffold_13 . exon 622150 622895 . - . ID=Physo130935.2;Parent=Physo130935;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 622937 623140 . - 0 ID=Physo130935;Parent=Physo130935;rank=1 scaffold_13 . exon 622937 623140 . - . ID=Physo130935.1;Parent=Physo130935;constitutive=1;rank=1 scaffold_13 . repeat_region 625398 625541 . + . description=(CTG)n scaffold_13 ensembl protein_coding_gene 626576 628663 . + . ID=Physo130936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130127;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 626576 628663 . + . ID=Physo130936;Parent=Physo130936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 626576 628663 . + 0 ID=Physo130936;Parent=Physo130936;rank=1 scaffold_13 . exon 626576 628663 . + . ID=Physo130936.1;Parent=Physo130936;constitutive=1;rank=1 scaffold_13 . biological_region 634117 634120 0.999 + . logic_name=eponine scaffold_13 . biological_region 639376 639376 0.999 + . logic_name=eponine scaffold_13 . repeat_region 639539 639546 . ? . description=dust scaffold_13 . repeat_region 640142 640170 . ? . description=trf scaffold_13 . repeat_region 643408 643439 . ? . description=trf scaffold_13 ensembl protein_coding_gene 638550 639244 . + . ID=Physo130937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130128;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 638550 639244 . + . ID=Physo130937;Parent=Physo130937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 638550 638765 . + 0 ID=Physo130937;Parent=Physo130937;rank=1 scaffold_13 . exon 638550 638765 . + . ID=Physo130937.1;Parent=Physo130937;constitutive=1;rank=1 scaffold_13 . CDS 638844 639060 . + 0 ID=Physo130937;Parent=Physo130937;rank=2 scaffold_13 . exon 638844 639060 . + . ID=Physo130937.2;Parent=Physo130937;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 639111 639119 . + 0 ID=Physo130937;Parent=Physo130937;rank=3 scaffold_13 . exon 639111 639119 . + . ID=Physo130937.3;Parent=Physo130937;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 639213 639244 . + 0 ID=Physo130937;Parent=Physo130937;rank=4 scaffold_13 . exon 639213 639244 . + . ID=Physo130937.4;Parent=Physo130937;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 ensembl protein_coding_gene 648047 649110 . - . ID=Physo130938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130129;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 648047 649110 . - . ID=Physo130938;Parent=Physo130938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 648047 648237 . - 0 ID=Physo130938;Parent=Physo130938;rank=4 scaffold_13 . exon 648047 648237 . - . ID=Physo130938.4;Parent=Physo130938;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 648361 648437 . - 0 ID=Physo130938;Parent=Physo130938;rank=3 scaffold_13 . exon 648361 648437 . - . ID=Physo130938.3;Parent=Physo130938;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 648504 648597 . - 0 ID=Physo130938;Parent=Physo130938;rank=2 scaffold_13 . exon 648504 648597 . - . ID=Physo130938.2;Parent=Physo130938;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 648801 649110 . - 0 ID=Physo130938;Parent=Physo130938;rank=1 scaffold_13 . exon 648801 649110 . - . ID=Physo130938.1;Parent=Physo130938;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . repeat_region 653819 653867 . ? . description=trf scaffold_13 . biological_region 654050 654054 0.999 - . logic_name=eponine scaffold_13 . biological_region 654567 654577 0.999 + . logic_name=eponine scaffold_13 . repeat_region 655471 655505 . ? . description=dust scaffold_13 . repeat_region 655475 655505 . ? . description=trf scaffold_13 . repeat_region 656859 657164 . + . description=GypsyPi-1c_LTR scaffold_13 . repeat_region 657165 659270 . + . description=GypsyPi-1c_I-int scaffold_13 . repeat_region 659105 659257 . ? . description=trf scaffold_13 . repeat_region 659242 659331 . + . description=GypsyPi-1c_I-int scaffold_13 . repeat_region 660159 660236 . + . description=GypsyPi-1c_I-int scaffold_13 . repeat_region 660793 660843 . ? . description=trf scaffold_13 . repeat_region 661734 662039 . + . description=GypsyPi-1c_LTR scaffold_13 . repeat_region 665341 665509 . + . description=Polinton-1_PI scaffold_13 . repeat_region 665524 665707 . + . description=Polinton-1_PI scaffold_13 ensembl protein_coding_gene 669075 669425 . + . ID=Physo130939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130130;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 669075 669425 . + . ID=Physo130939;Parent=Physo130939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 669075 669425 . + 0 ID=Physo130939;Parent=Physo130939;rank=1 scaffold_13 . exon 669075 669425 . + . ID=Physo130939.1;Parent=Physo130939;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 669958 670772 . - . ID=Physo130940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130131;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 669958 670772 . - . ID=Physo130940;Parent=Physo130940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 669958 669966 . - 0 ID=Physo130940;Parent=Physo130940;rank=3 scaffold_13 . exon 669958 669966 . - . ID=Physo130940.3;Parent=Physo130940;constitutive=1;rank=3 scaffold_13 . CDS 670160 670424 . - 0 ID=Physo130940;Parent=Physo130940;rank=2 scaffold_13 . exon 670160 670424 . - . ID=Physo130940.2;Parent=Physo130940;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 670525 670772 . - 0 ID=Physo130940;Parent=Physo130940;rank=1 scaffold_13 . exon 670525 670772 . - . ID=Physo130940.1;Parent=Physo130940;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . repeat_region 674671 674742 . ? . description=trf scaffold_13 . repeat_region 674690 674743 . ? . description=trf scaffold_13 . repeat_region 674696 674777 . ? . description=trf scaffold_13 . repeat_region 675914 675922 . ? . description=dust scaffold_13 . biological_region 677685 677686 0.999 - . logic_name=eponine scaffold_13 . biological_region 678903 678909 0.999 - . logic_name=eponine scaffold_13 . biological_region 681238 681239 0.999 + . logic_name=eponine scaffold_13 . biological_region 681306 681308 0.999 - . logic_name=eponine scaffold_13 . biological_region 682660 682666 0.999 + . logic_name=eponine scaffold_13 . biological_region 682700 682702 0.999 + . logic_name=eponine scaffold_13 . biological_region 682759 682761 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 673317 675252 . - . ID=Physo130941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130132;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 673317 675252 . - . ID=Physo130941;Parent=Physo130941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 673317 673473 . - 0 ID=Physo130941;Parent=Physo130941;rank=5 scaffold_13 . exon 673317 673473 . - . ID=Physo130941.5;Parent=Physo130941;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 673615 673773 . - 0 ID=Physo130941;Parent=Physo130941;rank=4 scaffold_13 . exon 673615 673773 . - . ID=Physo130941.4;Parent=Physo130941;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_13 . CDS 673855 674296 . - 0 ID=Physo130941;Parent=Physo130941;rank=3 scaffold_13 . exon 673855 674296 . - . ID=Physo130941.3;Parent=Physo130941;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_13 . CDS 674405 674943 . - 0 ID=Physo130941;Parent=Physo130941;rank=2 scaffold_13 . exon 674405 674943 . - . ID=Physo130941.2;Parent=Physo130941;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 675221 675252 . - 0 ID=Physo130941;Parent=Physo130941;rank=1 scaffold_13 . exon 675221 675252 . - . ID=Physo130941.1;Parent=Physo130941;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 676272 677708 . + . ID=Physo130942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130133;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 676272 677708 . + . ID=Physo130942;Parent=Physo130942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 676272 677708 . + 0 ID=Physo130942;Parent=Physo130942;rank=1 scaffold_13 . exon 676272 677708 . + . ID=Physo130942.1;Parent=Physo130942;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 687442 689487 . + . ID=Physo130943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130134;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 687442 689487 . + . ID=Physo130943;Parent=Physo130943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 687442 687648 . + 0 ID=Physo130943;Parent=Physo130943;rank=1 scaffold_13 . exon 687442 687648 . + . ID=Physo130943.1;Parent=Physo130943;constitutive=1;rank=1 scaffold_13 . CDS 687792 688484 . + 0 ID=Physo130943;Parent=Physo130943;rank=2 scaffold_13 . exon 687792 688484 . + . ID=Physo130943.2;Parent=Physo130943;constitutive=1;rank=2 scaffold_13 . CDS 688513 689487 . + 0 ID=Physo130943;Parent=Physo130943;rank=3 scaffold_13 . exon 688513 689487 . + . ID=Physo130943.3;Parent=Physo130943;constitutive=1;rank=3 scaffold_13 ensembl protein_coding_gene 689619 698275 . - . ID=Physo130944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130135;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 689619 698275 . - . ID=Physo130944;Parent=Physo130944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 689619 690465 . - 0 ID=Physo130944;Parent=Physo130944;rank=11 scaffold_13 . exon 689619 690465 . - . ID=Physo130944.11;Parent=Physo130944;constitutive=1;ensembl_phase=2;rank=11 scaffold_13 . CDS 690643 690905 . - 0 ID=Physo130944;Parent=Physo130944;rank=10 scaffold_13 . exon 690643 690905 . - . ID=Physo130944.10;Parent=Physo130944;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_13 . CDS 691023 692545 . - 0 ID=Physo130944;Parent=Physo130944;rank=9 scaffold_13 . exon 691023 692545 . - . ID=Physo130944.9;Parent=Physo130944;constitutive=1;ensembl_phase=1;rank=9 scaffold_13 . CDS 692597 692710 . - 0 ID=Physo130944;Parent=Physo130944;rank=8 scaffold_13 . exon 692597 692710 . - . ID=Physo130944.8;Parent=Physo130944;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_13 . CDS 692734 693314 . - 0 ID=Physo130944;Parent=Physo130944;rank=7 scaffold_13 . exon 692734 693314 . - . ID=Physo130944.7;Parent=Physo130944;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_13 . CDS 693343 694228 . - 0 ID=Physo130944;Parent=Physo130944;rank=6 scaffold_13 . CDS 694312 695281 . - 0 ID=Physo130944;Parent=Physo130944;rank=5 scaffold_13 . CDS 695319 696065 . - 0 ID=Physo130944;Parent=Physo130944;rank=4 scaffold_13 . CDS 696479 697030 . - 0 ID=Physo130944;Parent=Physo130944;rank=3 scaffold_13 . CDS 697057 697304 . - 0 ID=Physo130944;Parent=Physo130944;rank=2 scaffold_13 . CDS 697345 698275 . - 0 ID=Physo130944;Parent=Physo130944;rank=1 scaffold_13 . biological_region 693929 693930 0.999 - . logic_name=eponine scaffold_13 . biological_region 694080 694084 0.999 - . logic_name=eponine scaffold_13 . biological_region 694121 694122 0.999 - . logic_name=eponine scaffold_13 . biological_region 695024 695030 0.999 + . logic_name=eponine scaffold_13 . biological_region 695187 695191 0.999 - . logic_name=eponine scaffold_13 . biological_region 695433 695435 0.999 + . logic_name=eponine scaffold_13 . biological_region 695461 695464 0.999 + . logic_name=eponine scaffold_13 . biological_region 695564 695567 0.999 - . logic_name=eponine scaffold_13 . biological_region 696533 696533 0.999 - . logic_name=eponine scaffold_13 . biological_region 697296 697301 0.999 + . logic_name=eponine scaffold_13 . biological_region 697388 697389 0.999 - . logic_name=eponine scaffold_13 . repeat_region 697832 697879 . ? . description=trf scaffold_13 . biological_region 698114 698116 0.999 - . logic_name=eponine scaffold_13 . biological_region 698177 698182 0.999 - . logic_name=eponine scaffold_13 . repeat_region 698283 698333 . ? . description=trf scaffold_13 . biological_region 701963 701965 0.999 + . logic_name=eponine scaffold_13 . exon 693343 694228 . - . ID=Physo130944.6;Parent=Physo130944;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_13 . exon 694312 695281 . - . ID=Physo130944.5;Parent=Physo130944;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . exon 695319 696065 . - . ID=Physo130944.4;Parent=Physo130944;constitutive=1;rank=4 scaffold_13 . exon 696479 697030 . - . ID=Physo130944.3;Parent=Physo130944;constitutive=1;rank=3 scaffold_13 . exon 697057 697304 . - . ID=Physo130944.2;Parent=Physo130944;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . exon 697345 698275 . - . ID=Physo130944.1;Parent=Physo130944;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 700149 701053 . - . ID=Physo130945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130136;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 700149 701053 . - . ID=Physo130945;Parent=Physo130945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 700149 700789 . - 0 ID=Physo130945;Parent=Physo130945;rank=2 scaffold_13 . exon 700149 700789 . - . ID=Physo130945.2;Parent=Physo130945;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 700918 701053 . - 0 ID=Physo130945;Parent=Physo130945;rank=1 scaffold_13 . exon 700918 701053 . - . ID=Physo130945.1;Parent=Physo130945;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 701432 702169 . + . ID=Physo130946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130137;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 701432 702169 . + . ID=Physo130946;Parent=Physo130946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 701432 702169 . + 0 ID=Physo130946;Parent=Physo130946;rank=1 scaffold_13 . exon 701432 702169 . + . ID=Physo130946.1;Parent=Physo130946;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 702283 705898 . - . ID=Physo130947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130138;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 702283 705898 . - . ID=Physo130947;Parent=Physo130947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 702283 702894 . - 0 ID=Physo130947;Parent=Physo130947;rank=3 scaffold_13 . exon 702283 702894 . - . ID=Physo130947.3;Parent=Physo130947;constitutive=1;rank=3 scaffold_13 . CDS 702976 703117 . - 0 ID=Physo130947;Parent=Physo130947;rank=2 scaffold_13 . CDS 703191 705898 . - 0 ID=Physo130947;Parent=Physo130947;rank=1 scaffold_13 . repeat_region 706054 706096 . ? . description=dust scaffold_13 . exon 702976 703117 . - . ID=Physo130947.2;Parent=Physo130947;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . exon 703191 705898 . - . ID=Physo130947.1;Parent=Physo130947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 706035 707014 . + . ID=Physo130948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130139;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 706035 707014 . + . ID=Physo130948;Parent=Physo130948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 706035 706226 . + 0 ID=Physo130948;Parent=Physo130948;rank=1 scaffold_13 . exon 706035 706226 . + . ID=Physo130948.1;Parent=Physo130948;constitutive=1;rank=1 scaffold_13 . CDS 706296 706349 . + 0 ID=Physo130948;Parent=Physo130948;rank=2 scaffold_13 . exon 706296 706349 . + . ID=Physo130948.2;Parent=Physo130948;constitutive=1;rank=2 scaffold_13 . CDS 706444 706868 . + 0 ID=Physo130948;Parent=Physo130948;rank=3 scaffold_13 . exon 706444 706868 . + . ID=Physo130948.3;Parent=Physo130948;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 706948 706990 . + 0 ID=Physo130948;Parent=Physo130948;rank=4 scaffold_13 . exon 706948 707014 . + . ID=Physo130948.4;Parent=Physo130948;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_13 ensembl protein_coding_gene 707025 707762 . - . ID=Physo130949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130140;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 707025 707762 . - . ID=Physo130949;Parent=Physo130949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 707025 707762 . - 0 ID=Physo130949;Parent=Physo130949;rank=1 scaffold_13 . exon 707025 707762 . - . ID=Physo130949.1;Parent=Physo130949;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 708141 709045 . + . ID=Physo130950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130141;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 708141 709045 . + . ID=Physo130950;Parent=Physo130950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 708141 708276 . + 0 ID=Physo130950;Parent=Physo130950;rank=1 scaffold_13 . exon 708141 708276 . + . ID=Physo130950.1;Parent=Physo130950;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 708405 709045 . + 0 ID=Physo130950;Parent=Physo130950;rank=2 scaffold_13 . exon 708405 709045 . + . ID=Physo130950.2;Parent=Physo130950;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 711302 712399 . - . ID=Physo130951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130142;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 711302 712399 . - . ID=Physo130951;Parent=Physo130951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 711302 711706 . - 0 ID=Physo130951;Parent=Physo130951;rank=2 scaffold_13 . exon 711302 711706 . - . ID=Physo130951.2;Parent=Physo130951;constitutive=1;rank=2 scaffold_13 . CDS 711773 712399 . - 0 ID=Physo130951;Parent=Physo130951;rank=1 scaffold_13 . exon 711773 712399 . - . ID=Physo130951.1;Parent=Physo130951;constitutive=1;rank=1 scaffold_13 . repeat_region 715064 715195 . ? . description=trf scaffold_13 . repeat_region 719925 719978 . ? . description=trf scaffold_13 . repeat_region 719940 719972 . ? . description=trf scaffold_13 ensembl protein_coding_gene 713959 714343 . - . ID=Physo108518;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_130009;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 713959 714343 . - . ID=Physo108518;Parent=Physo108518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 713959 713992 . - 0 ID=Physo108518;Parent=Physo108518;rank=2 scaffold_13 . exon 713959 713992 . - . ID=Physo108518.2;Parent=Physo108518;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 714033 714343 . - 0 ID=Physo108518;Parent=Physo108518;rank=1 scaffold_13 . exon 714033 714343 . - . ID=Physo108518.1;Parent=Physo108518;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 714750 717820 . - . ID=Physo130953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130144;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 714750 717820 . - . ID=Physo130953;Parent=Physo130953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 714750 714783 . - 0 ID=Physo130953;Parent=Physo130953;rank=6 scaffold_13 . exon 714750 714783 . - . ID=Physo130953.6;Parent=Physo130953;constitutive=1;ensembl_phase=2;rank=6 scaffold_13 . CDS 714820 714934 . - 0 ID=Physo130953;Parent=Physo130953;rank=5 scaffold_13 . exon 714820 714934 . - . ID=Physo130953.5;Parent=Physo130953;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_13 . CDS 715034 715092 . - 0 ID=Physo130953;Parent=Physo130953;rank=4 scaffold_13 . exon 715034 715092 . - . ID=Physo130953.4;Parent=Physo130953;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 715128 716907 . - 0 ID=Physo130953;Parent=Physo130953;rank=3 scaffold_13 . exon 715128 716907 . - . ID=Physo130953.3;Parent=Physo130953;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_13 . CDS 716931 717223 . - 0 ID=Physo130953;Parent=Physo130953;rank=2 scaffold_13 . exon 716931 717223 . - . ID=Physo130953.2;Parent=Physo130953;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 717360 717820 . - 0 ID=Physo130953;Parent=Physo130953;rank=1 scaffold_13 . exon 717360 717820 . - . ID=Physo130953.1;Parent=Physo130953;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . repeat_region 723011 723018 . ? . description=dust scaffold_13 . biological_region 724860 724862 0.999 + . logic_name=eponine scaffold_13 . biological_region 724884 724885 0.999 + . logic_name=eponine scaffold_13 . biological_region 724955 724965 0.999 + . logic_name=eponine scaffold_13 . biological_region 724977 724978 0.999 - . logic_name=eponine scaffold_13 . repeat_region 725274 725319 . ? . description=dust scaffold_13 . repeat_region 728124 728154 . ? . description=dust scaffold_13 . biological_region 728317 728318 0.999 - . logic_name=eponine scaffold_13 . biological_region 728379 728381 0.999 - . logic_name=eponine scaffold_13 . repeat_region 729022 729059 . ? . description=dust scaffold_13 ensembl protein_coding_gene 723706 725587 . - . ID=Physo130954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130145;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 723706 725587 . - . ID=Physo130954;Parent=Physo130954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 723706 725587 . - . ID=Physo130954.1;Parent=Physo130954;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 723798 725504 . - 0 ID=Physo130954;Parent=Physo130954;rank=1 scaffold_13 ensembl protein_coding_gene 727233 729015 . + . ID=Physo130955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130146;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 727233 729015 . + . ID=Physo130955;Parent=Physo130955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 727233 728065 . + 0 ID=Physo130955;Parent=Physo130955;rank=1 scaffold_13 . exon 727233 728065 . + . ID=Physo130955.1;Parent=Physo130955;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 728160 728682 . + 0 ID=Physo130955;Parent=Physo130955;rank=2 scaffold_13 . exon 728160 728682 . + . ID=Physo130955.2;Parent=Physo130955;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 728764 728858 . + 0 ID=Physo130955;Parent=Physo130955;rank=3 scaffold_13 . exon 728764 728858 . + . ID=Physo130955.3;Parent=Physo130955;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 728985 729015 . + 0 ID=Physo130955;Parent=Physo130955;rank=4 scaffold_13 . exon 728985 729015 . + . ID=Physo130955.4;Parent=Physo130955;constitutive=1;ensembl_phase=2;rank=4 scaffold_13 . repeat_region 737362 737424 . ? . description=trf scaffold_13 . repeat_region 738875 738904 . ? . description=trf scaffold_13 ensembl protein_coding_gene 733606 735293 . - . ID=Physo130956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130147;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 733606 735293 . - . ID=Physo130956;Parent=Physo130956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 733606 733684 . - 0 ID=Physo130956;Parent=Physo130956;rank=5 scaffold_13 . exon 733606 733684 . - . ID=Physo130956.5;Parent=Physo130956;constitutive=1;ensembl_phase=2;rank=5 scaffold_13 . CDS 733740 733861 . - 0 ID=Physo130956;Parent=Physo130956;rank=4 scaffold_13 . exon 733740 733861 . - . ID=Physo130956.4;Parent=Physo130956;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_13 . CDS 733909 734176 . - 0 ID=Physo130956;Parent=Physo130956;rank=3 scaffold_13 . exon 733909 734176 . - . ID=Physo130956.3;Parent=Physo130956;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 734837 735240 . - 0 ID=Physo130956;Parent=Physo130956;rank=2 scaffold_13 . exon 734837 735240 . - . ID=Physo130956.2;Parent=Physo130956;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 735276 735293 . - 0 ID=Physo130956;Parent=Physo130956;rank=1 scaffold_13 . exon 735276 735293 . - . ID=Physo130956.1;Parent=Physo130956;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 740411 741301 . + . ID=Physo130957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130148;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 740411 741301 . + . ID=Physo130957;Parent=Physo130957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 740411 741301 . + 0 ID=Physo130957;Parent=Physo130957;rank=1 scaffold_13 . exon 740411 741301 . + . ID=Physo130957.1;Parent=Physo130957;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 741465 742588 . - . ID=Physo130958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130149;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 741465 742588 . - . ID=Physo130958;Parent=Physo130958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 741465 742265 . - 0 ID=Physo130958;Parent=Physo130958;rank=1 scaffold_13 . exon 741465 742588 . - . ID=Physo130958.1;Parent=Physo130958;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . repeat_region 743474 743525 . ? . description=dust scaffold_13 . repeat_region 746224 746231 . ? . description=dust scaffold_13 . repeat_region 747999 748009 . ? . description=dust scaffold_13 ensembl protein_coding_gene 744612 745727 . - . ID=Physo130959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130150;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 744612 745727 . - . ID=Physo130959;Parent=Physo130959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 744612 745488 . - 0 ID=Physo130959;Parent=Physo130959;rank=2 scaffold_13 . exon 744612 745488 . - . ID=Physo130959.2;Parent=Physo130959;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 745603 745727 . - 0 ID=Physo130959;Parent=Physo130959;rank=1 scaffold_13 . exon 745603 745727 . - . ID=Physo130959.1;Parent=Physo130959;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 751774 753052 . - . ID=Physo130960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130151;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 751774 753052 . - . ID=Physo130960;Parent=Physo130960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 751774 751974 . - 0 ID=Physo130960;Parent=Physo130960;rank=3 scaffold_13 . exon 751774 751974 . - . ID=Physo130960.3;Parent=Physo130960;constitutive=1;rank=3 scaffold_13 . CDS 752098 752798 . - 0 ID=Physo130960;Parent=Physo130960;rank=2 scaffold_13 . exon 752098 752798 . - . ID=Physo130960.2;Parent=Physo130960;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 752854 753052 . - 0 ID=Physo130960;Parent=Physo130960;rank=1 scaffold_13 . biological_region 753834 753841 0.999 - . logic_name=eponine scaffold_13 . biological_region 754333 754339 0.999 + . logic_name=eponine scaffold_13 . biological_region 755303 755307 0.999 + . logic_name=eponine scaffold_13 . exon 752854 753052 . - . ID=Physo130960.1;Parent=Physo130960;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 754339 756280 . + . ID=Physo130961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130152;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 754339 756280 . + . ID=Physo130961;Parent=Physo130961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 754339 754371 . + 0 ID=Physo130961;Parent=Physo130961;rank=1 scaffold_13 . exon 754339 754371 . + . ID=Physo130961.1;Parent=Physo130961;constitutive=1;rank=1 scaffold_13 . CDS 754477 756119 . + 0 ID=Physo130961;Parent=Physo130961;rank=2 scaffold_13 . exon 754477 756119 . + . ID=Physo130961.2;Parent=Physo130961;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 756184 756280 . + 0 ID=Physo130961;Parent=Physo130961;rank=3 scaffold_13 . exon 756184 756280 . + . ID=Physo130961.3;Parent=Physo130961;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . repeat_region 756564 764244 . ? . description=dust scaffold_13 . repeat_region 764245 772083 . ? . description=dust scaffold_13 . biological_region 776839 776841 0.999 - . logic_name=eponine scaffold_13 . biological_region 779828 779832 0.999 + . logic_name=eponine scaffold_13 . biological_region 782045 782046 0.999 + . logic_name=eponine scaffold_13 . repeat_region 782792 782860 . ? . description=trf scaffold_13 . repeat_region 783231 783282 . ? . description=trf scaffold_13 . repeat_region 784003 784010 . ? . description=dust scaffold_13 . repeat_region 784754 784796 . ? . description=dust scaffold_13 . repeat_region 786487 786494 . ? . description=dust scaffold_13 . repeat_region 791188 791195 . ? . description=dust scaffold_13 . biological_region 792392 792394 0.999 + . logic_name=eponine scaffold_13 . biological_region 793142 793145 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 797089 798300 . - . ID=Physo130962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130153;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 797089 798300 . - . ID=Physo130962;Parent=Physo130962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 797089 798300 . - 0 ID=Physo130962;Parent=Physo130962;rank=1 scaffold_13 . exon 797089 798300 . - . ID=Physo130962.1;Parent=Physo130962;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 802775 804661 . - . ID=Physo130963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130154;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 802775 804661 . - . ID=Physo130963;Parent=Physo130963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 802775 804661 . - 0 ID=Physo130963;Parent=Physo130963;rank=1 scaffold_13 . exon 802775 804661 . - . ID=Physo130963.1;Parent=Physo130963;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 806229 806908 . + . ID=Physo130964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130155;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 806229 806908 . + . ID=Physo130964;Parent=Physo130964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 806229 806754 . + . ID=Physo130964.1;Parent=Physo130964;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_13 . CDS 806234 806754 . + 0 ID=Physo130964;Parent=Physo130964;rank=1 scaffold_13 . CDS 806808 806907 . + 0 ID=Physo130964;Parent=Physo130964;rank=2 scaffold_13 . exon 806808 806908 . + . ID=Physo130964.2;Parent=Physo130964;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_13 ensembl protein_coding_gene 808564 811149 . + . ID=Physo130965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130156;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 808564 811149 . + . ID=Physo130965;Parent=Physo130965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 808564 809564 . + 0 ID=Physo130965;Parent=Physo130965;rank=1 scaffold_13 . exon 808564 809564 . + . ID=Physo130965.1;Parent=Physo130965;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 809836 809845 . + 0 ID=Physo130965;Parent=Physo130965;rank=2 scaffold_13 . exon 809836 809845 . + . ID=Physo130965.2;Parent=Physo130965;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 809911 811149 . + 0 ID=Physo130965;Parent=Physo130965;rank=3 scaffold_13 . exon 809911 811149 . + . ID=Physo130965.3;Parent=Physo130965;constitutive=1;rank=3 scaffold_13 . biological_region 814159 814163 0.999 + . logic_name=eponine scaffold_13 . biological_region 818398 818402 0.999 + . logic_name=eponine scaffold_13 . biological_region 818457 818458 0.999 - . logic_name=eponine scaffold_13 . biological_region 818468 818469 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 812543 813724 . + . ID=Physo130966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130157;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 812543 813724 . + . ID=Physo130966;Parent=Physo130966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 812543 813724 . + 0 ID=Physo130966;Parent=Physo130966;rank=1 scaffold_13 . exon 812543 813724 . + . ID=Physo130966.1;Parent=Physo130966;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 816423 817432 . - . ID=Physo130967;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130158;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 816423 817432 . - . ID=Physo130967;Parent=Physo130967;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 816423 817432 . - . ID=Physo130967.1;Parent=Physo130967;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 816772 817203 . - 0 ID=Physo130967;Parent=Physo130967;rank=1 scaffold_13 ensembl protein_coding_gene 820736 822120 . + . ID=Physo130968;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130159;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 820736 822120 . + . ID=Physo130968;Parent=Physo130968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 820736 820974 . + 0 ID=Physo130968;Parent=Physo130968;rank=1 scaffold_13 . exon 820736 820974 . + . ID=Physo130968.1;Parent=Physo130968;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 . CDS 821242 821317 . + 0 ID=Physo130968;Parent=Physo130968;rank=2 scaffold_13 . exon 821242 821317 . + . ID=Physo130968.2;Parent=Physo130968;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 821356 821457 . + 0 ID=Physo130968;Parent=Physo130968;rank=3 scaffold_13 . exon 821356 821457 . + . ID=Physo130968.3;Parent=Physo130968;constitutive=1;rank=3 scaffold_13 . CDS 821740 822120 . + 0 ID=Physo130968;Parent=Physo130968;rank=4 scaffold_13 . exon 821740 822120 . + . ID=Physo130968.4;Parent=Physo130968;constitutive=1;rank=4 scaffold_13 . repeat_region 823665 823759 . ? . description=trf scaffold_13 . repeat_region 827661 827673 . ? . description=dust scaffold_13 . repeat_region 828120 828147 . ? . description=trf scaffold_13 . repeat_region 828717 828774 . ? . description=trf scaffold_13 . repeat_region 829377 829401 . ? . description=dust scaffold_13 . repeat_region 829647 829681 . ? . description=trf scaffold_13 . repeat_region 831395 831429 . ? . description=trf scaffold_13 . repeat_region 831577 831620 . ? . description=trf scaffold_13 ensembl protein_coding_gene 824312 824518 . + . ID=Physo113264;biotype=protein_coding;external_name=estExt_Genewise1.C_130047;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 824312 824518 . + . ID=Physo113264;Parent=Physo113264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 824312 824518 . + . ID=Physo113264.1;Parent=Physo113264;constitutive=1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 824321 824518 . + 0 ID=Physo113264;Parent=Physo113264;rank=1 scaffold_13 ensembl protein_coding_gene 829140 831846 . + . ID=Physo130969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130160;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 829140 831846 . + . ID=Physo130969;Parent=Physo130969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 829140 829535 . + 0 ID=Physo130969;Parent=Physo130969;rank=1 scaffold_13 . exon 829140 829535 . + . ID=Physo130969.1;Parent=Physo130969;constitutive=1;rank=1 scaffold_13 . CDS 829585 831846 . + 0 ID=Physo130969;Parent=Physo130969;rank=2 scaffold_13 . exon 829585 831846 . + . ID=Physo130969.2;Parent=Physo130969;constitutive=1;rank=2 scaffold_13 . biological_region 832755 832756 0.999 + . logic_name=eponine scaffold_13 . biological_region 832955 832960 0.999 + . logic_name=eponine scaffold_13 . biological_region 832975 832977 0.999 + . logic_name=eponine scaffold_13 . biological_region 833071 833077 0.999 - . logic_name=eponine scaffold_13 . biological_region 833074 833076 0.999 + . logic_name=eponine scaffold_13 . biological_region 833260 833261 0.999 - . logic_name=eponine scaffold_13 . biological_region 833621 833625 0.999 + . logic_name=eponine scaffold_13 . repeat_region 834841 837171 . - . description=GypsyPi-1c_I-int scaffold_13 . biological_region 838376 838381 0.999 - . logic_name=eponine scaffold_13 . biological_region 840048 840049 0.999 + . logic_name=eponine scaffold_13 . biological_region 840094 840098 0.999 + . logic_name=eponine scaffold_13 . biological_region 840194 840196 0.999 - . logic_name=eponine scaffold_13 . biological_region 840220 840225 0.999 - . logic_name=eponine scaffold_13 . biological_region 840250 840254 0.999 + . logic_name=eponine scaffold_13 . biological_region 840274 840280 0.999 + . logic_name=eponine scaffold_13 . biological_region 840467 840473 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 832710 833359 . + . ID=Physo130970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130161;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 832710 833359 . + . ID=Physo130970;Parent=Physo130970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 832710 833210 . + 0 ID=Physo130970;Parent=Physo130970;rank=1 scaffold_13 . exon 832710 833210 . + . ID=Physo130970.1;Parent=Physo130970;constitutive=1;rank=1 scaffold_13 . CDS 833327 833359 . + 0 ID=Physo130970;Parent=Physo130970;rank=2 scaffold_13 . exon 833327 833359 . + . ID=Physo130970.2;Parent=Physo130970;constitutive=1;rank=2 scaffold_13 ensembl protein_coding_gene 834326 836837 . - . ID=Physo130971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130162;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 834326 836837 . - . ID=Physo130971;Parent=Physo130971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 834326 834385 . - 0 ID=Physo130971;Parent=Physo130971;rank=3 scaffold_13 . exon 834326 834385 . - . ID=Physo130971.3;Parent=Physo130971;constitutive=1;rank=3 scaffold_13 . CDS 834465 834933 . - 0 ID=Physo130971;Parent=Physo130971;rank=2 scaffold_13 . exon 834465 834933 . - . ID=Physo130971.2;Parent=Physo130971;constitutive=1;ensembl_phase=2;rank=2 scaffold_13 . CDS 835159 836837 . - 0 ID=Physo130971;Parent=Physo130971;rank=1 scaffold_13 . exon 835159 836837 . - . ID=Physo130971.1;Parent=Physo130971;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_13 ensembl protein_coding_gene 837302 839612 . - . ID=Physo130972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130163;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 837302 839612 . - . ID=Physo130972;Parent=Physo130972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 837302 837808 . - 0 ID=Physo130972;Parent=Physo130972;rank=4 scaffold_13 . exon 837302 837808 . - . ID=Physo130972.4;Parent=Physo130972;constitutive=1;rank=4 scaffold_13 . CDS 838057 838450 . - 0 ID=Physo130972;Parent=Physo130972;rank=3 scaffold_13 . exon 838057 838450 . - . ID=Physo130972.3;Parent=Physo130972;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 838610 838625 . - 0 ID=Physo130972;Parent=Physo130972;rank=2 scaffold_13 . exon 838610 838625 . - . ID=Physo130972.2;Parent=Physo130972;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 839033 839612 . - 0 ID=Physo130972;Parent=Physo130972;rank=1 scaffold_13 . exon 839033 839612 . - . ID=Physo130972.1;Parent=Physo130972;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 841202 842951 . + . ID=Physo130973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130164;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 841202 842951 . + . ID=Physo130973;Parent=Physo130973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 841202 841576 . + 0 ID=Physo130973;Parent=Physo130973;rank=1 scaffold_13 . exon 841202 841576 . + . ID=Physo130973.1;Parent=Physo130973;constitutive=1;rank=1 scaffold_13 . CDS 841602 841671 . + 0 ID=Physo130973;Parent=Physo130973;rank=2 scaffold_13 . CDS 841748 842544 . + 0 ID=Physo130973;Parent=Physo130973;rank=3 scaffold_13 . CDS 842682 842951 . + 0 ID=Physo130973;Parent=Physo130973;rank=4 scaffold_13 . repeat_region 844338 845801 . ? . description=dust scaffold_13 . repeat_region 846220 846252 . ? . description=dust scaffold_13 . repeat_region 846220 846252 . ? . description=trf scaffold_13 . repeat_region 846241 846285 . ? . description=trf scaffold_13 . repeat_region 846608 846654 . ? . description=trf scaffold_13 . repeat_region 846608 846663 . ? . description=dust scaffold_13 . repeat_region 849933 849952 . ? . description=trf scaffold_13 . repeat_region 850574 850614 . ? . description=trf scaffold_13 . repeat_region 850574 850628 . ? . description=dust scaffold_13 . repeat_region 850574 850753 . + . description=(CAG)n scaffold_13 . repeat_region 850634 850665 . ? . description=trf scaffold_13 . repeat_region 850647 850718 . ? . description=trf scaffold_13 . repeat_region 850658 850754 . ? . description=trf scaffold_13 . repeat_region 850817 850836 . ? . description=dust scaffold_13 . repeat_region 850817 850836 . ? . description=trf scaffold_13 . exon 841602 841671 . + . ID=Physo130973.2;Parent=Physo130973;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . exon 841748 842544 . + . ID=Physo130973.3;Parent=Physo130973;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . exon 842682 842951 . + . ID=Physo130973.4;Parent=Physo130973;constitutive=1;rank=4 scaffold_13 ensembl protein_coding_gene 846198 846953 . - . ID=Physo130974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130165;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 846198 846953 . - . ID=Physo130974;Parent=Physo130974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 846198 846953 . - 0 ID=Physo130974;Parent=Physo130974;rank=1 scaffold_13 . exon 846198 846953 . - . ID=Physo130974.1;Parent=Physo130974;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 849963 851645 . + . ID=Physo130975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130166;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 849963 851645 . + . ID=Physo130975;Parent=Physo130975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 849963 851645 . + 0 ID=Physo130975;Parent=Physo130975;rank=1 scaffold_13 . exon 849963 851645 . + . ID=Physo130975.1;Parent=Physo130975;constitutive=1;rank=1 scaffold_13 . biological_region 851916 851916 0.999 - . logic_name=eponine scaffold_13 . biological_region 852546 852547 0.999 - . logic_name=eponine scaffold_13 . biological_region 853567 853568 0.999 + . logic_name=eponine scaffold_13 . biological_region 854343 854345 0.999 - . logic_name=eponine scaffold_13 . biological_region 857608 857609 0.999 - . logic_name=eponine scaffold_13 . biological_region 857646 857652 0.999 + . logic_name=eponine scaffold_13 . biological_region 858965 858968 0.999 + . logic_name=eponine scaffold_13 . biological_region 860096 860101 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 852411 853246 . + . ID=Physo130976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130167;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 852411 853246 . + . ID=Physo130976;Parent=Physo130976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 852411 852597 . + 0 ID=Physo130976;Parent=Physo130976;rank=1 scaffold_13 . exon 852411 852597 . + . ID=Physo130976.1;Parent=Physo130976;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 852663 853246 . + 0 ID=Physo130976;Parent=Physo130976;rank=2 scaffold_13 . exon 852663 853246 . + . ID=Physo130976.2;Parent=Physo130976;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 853571 854021 . - . ID=Physo130977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130168;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 853571 854021 . - . ID=Physo130977;Parent=Physo130977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 853571 853694 . - 0 ID=Physo130977;Parent=Physo130977;rank=3 scaffold_13 . exon 853571 853694 . - . ID=Physo130977.3;Parent=Physo130977;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . CDS 853765 853901 . - 0 ID=Physo130977;Parent=Physo130977;rank=2 scaffold_13 . exon 853765 853901 . - . ID=Physo130977.2;Parent=Physo130977;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_13 . CDS 853968 854021 . - 0 ID=Physo130977;Parent=Physo130977;rank=1 scaffold_13 . exon 853968 854021 . - . ID=Physo130977.1;Parent=Physo130977;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 854390 856013 . - . ID=Physo130978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130169;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 854390 856013 . - . ID=Physo130978;Parent=Physo130978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 854390 855339 . - . ID=Physo130978.3;Parent=Physo130978;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_13 . CDS 854719 855339 . - 0 ID=Physo130978;Parent=Physo130978;rank=3 scaffold_13 . CDS 855427 855618 . - 0 ID=Physo130978;Parent=Physo130978;rank=2 scaffold_13 . exon 855427 855618 . - . ID=Physo130978.2;Parent=Physo130978;constitutive=1;rank=2 scaffold_13 . CDS 855696 856013 . - 0 ID=Physo130978;Parent=Physo130978;rank=1 scaffold_13 . exon 855696 856013 . - . ID=Physo130978.1;Parent=Physo130978;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 857394 858665 . - . ID=Physo130979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130170;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 857394 858665 . - . ID=Physo130979;Parent=Physo130979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 857394 858665 . - 0 ID=Physo130979;Parent=Physo130979;rank=1 scaffold_13 . exon 857394 858665 . - . ID=Physo130979.1;Parent=Physo130979;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 858827 860237 . - . ID=Physo130980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130171;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 858827 860237 . - . ID=Physo130980;Parent=Physo130980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 858827 859252 . - 0 ID=Physo130980;Parent=Physo130980;rank=3 scaffold_13 . exon 858827 859252 . - . ID=Physo130980.3;Parent=Physo130980;constitutive=1;rank=3 scaffold_13 . CDS 859336 859650 . - 0 ID=Physo130980;Parent=Physo130980;rank=2 scaffold_13 . exon 859336 859650 . - . ID=Physo130980.2;Parent=Physo130980;constitutive=1;rank=2 scaffold_13 . CDS 859725 860237 . - 0 ID=Physo130980;Parent=Physo130980;rank=1 scaffold_13 . exon 859725 860237 . - . ID=Physo130980.1;Parent=Physo130980;constitutive=1;rank=1 scaffold_13 . repeat_region 869135 869173 . ? . description=trf scaffold_13 ensembl protein_coding_gene 867236 868399 . - . ID=Physo130981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130172;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 867236 868399 . - . ID=Physo130981;Parent=Physo130981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 867236 867559 . - . ID=Physo130981.3;Parent=Physo130981;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_13 . exon 867636 867941 . - . ID=Physo130981.2;Parent=Physo130981;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_13 . CDS 867705 867941 . - 0 ID=Physo130981;Parent=Physo130981;rank=2 scaffold_13 . CDS 868025 868399 . - 0 ID=Physo130981;Parent=Physo130981;rank=1 scaffold_13 . exon 868025 868399 . - . ID=Physo130981.1;Parent=Physo130981;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 869378 869996 . - . ID=Physo130982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130173;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 869378 869996 . - . ID=Physo130982;Parent=Physo130982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 869378 869996 . - . ID=Physo130982.1;Parent=Physo130982;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 869416 869979 . - 0 ID=Physo130982;Parent=Physo130982;rank=1 scaffold_13 ensembl protein_coding_gene 870579 871133 . - . ID=Physo130983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130174;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 870579 871133 . - . ID=Physo130983;Parent=Physo130983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 870579 871133 . - 0 ID=Physo130983;Parent=Physo130983;rank=1 scaffold_13 . exon 870579 871133 . - . ID=Physo130983.1;Parent=Physo130983;constitutive=1;rank=1 scaffold_13 . biological_region 877063 877064 0.999 + . logic_name=eponine scaffold_13 . biological_region 878959 878959 0.999 + . logic_name=eponine scaffold_13 . biological_region 881094 881096 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 872458 875397 . - . ID=Physo130984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130175;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 872458 875397 . - . ID=Physo130984;Parent=Physo130984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 872458 872610 . - . ID=Physo130984.8;Parent=Physo130984;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_13 . CDS 872497 872610 . - 0 ID=Physo130984;Parent=Physo130984;rank=8 scaffold_13 . CDS 872684 872818 . - 0 ID=Physo130984;Parent=Physo130984;rank=7 scaffold_13 . exon 872684 872818 . - . ID=Physo130984.7;Parent=Physo130984;constitutive=1;rank=7 scaffold_13 . CDS 872902 873078 . - 0 ID=Physo130984;Parent=Physo130984;rank=6 scaffold_13 . exon 872902 873078 . - . ID=Physo130984.6;Parent=Physo130984;constitutive=1;rank=6 scaffold_13 . CDS 873297 873967 . - 0 ID=Physo130984;Parent=Physo130984;rank=5 scaffold_13 . exon 873297 873967 . - . ID=Physo130984.5;Parent=Physo130984;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 874214 874221 . - 0 ID=Physo130984;Parent=Physo130984;rank=4 scaffold_13 . exon 874214 874221 . - . ID=Physo130984.4;Parent=Physo130984;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_13 . CDS 874334 874356 . - 0 ID=Physo130984;Parent=Physo130984;rank=3 scaffold_13 . exon 874334 874356 . - . ID=Physo130984.3;Parent=Physo130984;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_13 . CDS 874398 874766 . - 0 ID=Physo130984;Parent=Physo130984;rank=2 scaffold_13 . exon 874398 874766 . - . ID=Physo130984.2;Parent=Physo130984;constitutive=1;rank=2 scaffold_13 . CDS 874837 875397 . - 0 ID=Physo130984;Parent=Physo130984;rank=1 scaffold_13 . exon 874837 875397 . - . ID=Physo130984.1;Parent=Physo130984;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 876784 881290 . - . ID=Physo130985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130176;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 876784 881290 . - . ID=Physo130985;Parent=Physo130985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 876784 876822 . - 0 ID=Physo130985;Parent=Physo130985;rank=11 scaffold_13 . exon 876784 876822 . - . ID=Physo130985.11;Parent=Physo130985;constitutive=1;rank=11 scaffold_13 . CDS 876921 877430 . - 0 ID=Physo130985;Parent=Physo130985;rank=10 scaffold_13 . exon 876921 877430 . - . ID=Physo130985.10;Parent=Physo130985;constitutive=1;rank=10 scaffold_13 . CDS 877605 877626 . - 0 ID=Physo130985;Parent=Physo130985;rank=9 scaffold_13 . exon 877605 877626 . - . ID=Physo130985.9;Parent=Physo130985;constitutive=1;ensembl_phase=2;rank=9 scaffold_13 . CDS 877727 878160 . - 0 ID=Physo130985;Parent=Physo130985;rank=8 scaffold_13 . exon 877727 878160 . - . ID=Physo130985.8;Parent=Physo130985;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_13 . CDS 878233 878905 . - 0 ID=Physo130985;Parent=Physo130985;rank=7 scaffold_13 . exon 878233 878905 . - . ID=Physo130985.7;Parent=Physo130985;constitutive=1;ensembl_phase=2;rank=7 scaffold_13 . CDS 878967 879171 . - 0 ID=Physo130985;Parent=Physo130985;rank=6 scaffold_13 . exon 878967 879171 . - . ID=Physo130985.6;Parent=Physo130985;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_13 . CDS 879509 879526 . - 0 ID=Physo130985;Parent=Physo130985;rank=5 scaffold_13 . exon 879509 879526 . - . ID=Physo130985.5;Parent=Physo130985;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 879904 880297 . - 0 ID=Physo130985;Parent=Physo130985;rank=4 scaffold_13 . exon 879904 880297 . - . ID=Physo130985.4;Parent=Physo130985;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_13 . CDS 880364 880654 . - 0 ID=Physo130985;Parent=Physo130985;rank=3 scaffold_13 . exon 880364 880654 . - . ID=Physo130985.3;Parent=Physo130985;constitutive=1;rank=3 scaffold_13 . CDS 880716 880751 . - 0 ID=Physo130985;Parent=Physo130985;rank=2 scaffold_13 . exon 880716 880751 . - . ID=Physo130985.2;Parent=Physo130985;constitutive=1;rank=2 scaffold_13 . CDS 880814 881290 . - 0 ID=Physo130985;Parent=Physo130985;rank=1 scaffold_13 . exon 880814 881290 . - . ID=Physo130985.1;Parent=Physo130985;constitutive=1;rank=1 scaffold_13 . repeat_region 881391 881402 . ? . description=dust scaffold_13 . repeat_region 884293 884301 . ? . description=dust scaffold_13 . repeat_region 884395 884419 . ? . description=trf scaffold_13 ensembl protein_coding_gene 886263 887695 . + . ID=Physo130986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130177;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 886263 887695 . + . ID=Physo130986;Parent=Physo130986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 886263 886802 . + 0 ID=Physo130986;Parent=Physo130986;rank=1 scaffold_13 . exon 886263 886802 . + . ID=Physo130986.1;Parent=Physo130986;constitutive=1;rank=1 scaffold_13 . CDS 887004 887159 . + 0 ID=Physo130986;Parent=Physo130986;rank=2 scaffold_13 . exon 887004 887159 . + . ID=Physo130986.2;Parent=Physo130986;constitutive=1;rank=2 scaffold_13 . CDS 887234 887695 . + 0 ID=Physo130986;Parent=Physo130986;rank=3 scaffold_13 . exon 887234 887695 . + . ID=Physo130986.3;Parent=Physo130986;constitutive=1;rank=3 scaffold_13 ensembl protein_coding_gene 889738 891051 . - . ID=Physo130987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130178;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 889738 891051 . - . ID=Physo130987;Parent=Physo130987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 889738 890187 . - 0 ID=Physo130987;Parent=Physo130987;rank=2 scaffold_13 . exon 889738 890187 . - . ID=Physo130987.2;Parent=Physo130987;constitutive=1;rank=2 scaffold_13 . CDS 890254 891051 . - 0 ID=Physo130987;Parent=Physo130987;rank=1 scaffold_13 . exon 890254 891051 . - . ID=Physo130987.1;Parent=Physo130987;constitutive=1;rank=1 scaffold_13 . biological_region 896708 896712 0.999 + . logic_name=eponine scaffold_13 . biological_region 898908 898909 0.999 + . logic_name=eponine scaffold_13 . biological_region 899444 899448 0.999 + . logic_name=eponine scaffold_13 . biological_region 900875 900879 0.999 - . logic_name=eponine scaffold_13 ensembl protein_coding_gene 891561 892371 . + . ID=Physo130988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130179;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 891561 892371 . + . ID=Physo130988;Parent=Physo130988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 891561 891573 . + 0 ID=Physo130988;Parent=Physo130988;rank=1 scaffold_13 . exon 891561 891573 . + . ID=Physo130988.1;Parent=Physo130988;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 891599 891854 . + 0 ID=Physo130988;Parent=Physo130988;rank=2 scaffold_13 . exon 891599 891854 . + . ID=Physo130988.2;Parent=Physo130988;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_13 . CDS 891921 892371 . + 0 ID=Physo130988;Parent=Physo130988;rank=3 scaffold_13 . exon 891921 892371 . + . ID=Physo130988.3;Parent=Physo130988;constitutive=1;ensembl_phase=2;rank=3 scaffold_13 . repeat_region 901880 902351 . + . description=Gypsy-2-I_PI-int scaffold_13 . repeat_region 902752 902801 . ? . description=dust scaffold_13 . repeat_region 903403 903497 . ? . description=trf scaffold_13 . repeat_region 905585 905679 . ? . description=trf scaffold_13 . repeat_region 907050 907521 . + . description=Gypsy-2-I_PI-int scaffold_13 ensembl protein_coding_gene 903553 905420 . - . ID=Physo130989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130180;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 903553 905420 . - . ID=Physo130989;Parent=Physo130989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 903553 903779 . - 0 ID=Physo130989;Parent=Physo130989;rank=5 scaffold_13 . exon 903553 903779 . - . ID=Physo130989.5;Parent=Physo130989;constitutive=1;ensembl_phase=1;rank=5 scaffold_13 . CDS 903824 904477 . - 0 ID=Physo130989;Parent=Physo130989;rank=4 scaffold_13 . exon 903824 904477 . - . ID=Physo130989.4;Parent=Physo130989;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 904528 905017 . - 0 ID=Physo130989;Parent=Physo130989;rank=3 scaffold_13 . exon 904528 905017 . - . ID=Physo130989.3;Parent=Physo130989;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . CDS 905057 905320 . - 0 ID=Physo130989;Parent=Physo130989;rank=2 scaffold_13 . exon 905057 905320 . - . ID=Physo130989.2;Parent=Physo130989;constitutive=1;rank=2 scaffold_13 . CDS 905388 905420 . - 0 ID=Physo130989;Parent=Physo130989;rank=1 scaffold_13 . exon 905388 905420 . - . ID=Physo130989.1;Parent=Physo130989;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 907000 908188 . + . ID=Physo130990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130181;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 907000 908188 . + . ID=Physo130990;Parent=Physo130990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 907000 907006 . + 0 ID=Physo130990;Parent=Physo130990;rank=1 scaffold_13 . exon 907000 907006 . + . ID=Physo130990.1;Parent=Physo130990;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 . CDS 907095 908188 . + 0 ID=Physo130990;Parent=Physo130990;rank=2 scaffold_13 . exon 907095 908188 . + . ID=Physo130990.2;Parent=Physo130990;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 ensembl protein_coding_gene 909702 910298 . + . ID=Physo130991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130182;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 909702 910298 . + . ID=Physo130991;Parent=Physo130991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 909702 910298 . + 0 ID=Physo130991;Parent=Physo130991;rank=1 scaffold_13 . exon 909702 910298 . + . ID=Physo130991.1;Parent=Physo130991;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 910524 912848 . - . ID=Physo130992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130183;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 910524 912848 . - . ID=Physo130992;Parent=Physo130992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 910524 910570 . - 0 ID=Physo130992;Parent=Physo130992;rank=6 scaffold_13 . exon 910524 910570 . - . ID=Physo130992.6;Parent=Physo130992;constitutive=1;ensembl_phase=1;rank=6 scaffold_13 . CDS 910658 910841 . - 0 ID=Physo130992;Parent=Physo130992;rank=5 scaffold_13 . exon 910658 910841 . - . ID=Physo130992.5;Parent=Physo130992;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_13 . CDS 910927 911133 . - 0 ID=Physo130992;Parent=Physo130992;rank=4 scaffold_13 . CDS 911241 911404 . - 0 ID=Physo130992;Parent=Physo130992;rank=3 scaffold_13 . CDS 911433 911781 . - 0 ID=Physo130992;Parent=Physo130992;rank=2 scaffold_13 . CDS 911949 912848 . - 0 ID=Physo130992;Parent=Physo130992;rank=1 scaffold_13 . biological_region 911582 911584 0.999 + . logic_name=eponine scaffold_13 . biological_region 912457 912461 0.999 + . logic_name=eponine scaffold_13 . biological_region 912646 912648 0.999 - . logic_name=eponine scaffold_13 . biological_region 912705 912706 0.999 + . logic_name=eponine scaffold_13 . biological_region 913148 913155 0.999 + . logic_name=eponine scaffold_13 . biological_region 913283 913290 0.999 - . logic_name=eponine scaffold_13 . biological_region 913829 913831 0.999 + . logic_name=eponine scaffold_13 . biological_region 919923 919926 0.999 - . logic_name=eponine scaffold_13 . exon 910927 911133 . - . ID=Physo130992.4;Parent=Physo130992;constitutive=1;rank=4 scaffold_13 . exon 911241 911404 . - . ID=Physo130992.3;Parent=Physo130992;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . exon 911433 911781 . - . ID=Physo130992.2;Parent=Physo130992;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . exon 911949 912848 . - . ID=Physo130992.1;Parent=Physo130992;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 913074 913553 . - . ID=Physo130993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130184;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 913074 913553 . - . ID=Physo130993;Parent=Physo130993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 913074 913553 . - 0 ID=Physo130993;Parent=Physo130993;rank=1 scaffold_13 . exon 913074 913553 . - . ID=Physo130993.1;Parent=Physo130993;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 914524 915147 . - . ID=Physo130994;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130185;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 914524 915147 . - . ID=Physo130994;Parent=Physo130994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 914524 915147 . - . ID=Physo130994.1;Parent=Physo130994;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 914588 915106 . - 0 ID=Physo130994;Parent=Physo130994;rank=1 scaffold_13 ensembl protein_coding_gene 916865 917392 . - . ID=Physo130995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130186;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 916865 917392 . - . ID=Physo130995;Parent=Physo130995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 916865 917392 . - 0 ID=Physo130995;Parent=Physo130995;rank=1 scaffold_13 . exon 916865 917392 . - . ID=Physo130995.1;Parent=Physo130995;constitutive=1;rank=1 scaffold_13 ensembl protein_coding_gene 918460 920361 . + . ID=Physo130996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130187;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 918460 920361 . + . ID=Physo130996;Parent=Physo130996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 918460 918618 . + 0 ID=Physo130996;Parent=Physo130996;rank=1 scaffold_13 . exon 918460 918618 . + . ID=Physo130996.1;Parent=Physo130996;constitutive=1;rank=1 scaffold_13 . CDS 918699 918963 . + 0 ID=Physo130996;Parent=Physo130996;rank=2 scaffold_13 . exon 918699 918963 . + . ID=Physo130996.2;Parent=Physo130996;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 919034 920217 . + 0 ID=Physo130996;Parent=Physo130996;rank=3 scaffold_13 . exon 919034 920361 . + . ID=Physo130996.3;Parent=Physo130996;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_13 . repeat_region 924920 924962 . ? . description=dust scaffold_13 . repeat_region 924977 924984 . ? . description=dust scaffold_13 ensembl pseudogene 929293 930129 . - . ID=Physo108519;biotype=pseudogene;external_name=estExt_fgenesh1_pm.C_130010;logic_name=jgi_physo1_1 scaffold_13 ensembl pseudogene 929293 930129 . - . ID=Physo108519;Parent=Physo108519;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_13 . exon 929293 930129 . - . ID=Physo108519.1;Parent=Physo108519;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 ensembl protein_coding_gene 924375 925386 . - . ID=Physo130997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130188;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 924375 925386 . - . ID=Physo130997;Parent=Physo130997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 924375 924919 . - 0 ID=Physo130997;Parent=Physo130997;rank=4 scaffold_13 . exon 924375 924919 . - . ID=Physo130997.4;Parent=Physo130997;constitutive=1;ensembl_phase=1;rank=4 scaffold_13 . CDS 924994 925012 . - 0 ID=Physo130997;Parent=Physo130997;rank=3 scaffold_13 . exon 924994 925012 . - . ID=Physo130997.3;Parent=Physo130997;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_13 . CDS 925155 925246 . - 0 ID=Physo130997;Parent=Physo130997;rank=2 scaffold_13 . exon 925155 925246 . - . ID=Physo130997.2;Parent=Physo130997;constitutive=1;ensembl_phase=1;rank=2 scaffold_13 . CDS 925338 925386 . - 0 ID=Physo130997;Parent=Physo130997;rank=1 scaffold_13 . exon 925338 925386 . - . ID=Physo130997.1;Parent=Physo130997;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_13 ensembl protein_coding_gene 927798 929198 . + . ID=Physo130998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130189;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 927798 929198 . + . ID=Physo130998;Parent=Physo130998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 927798 927953 . + 0 ID=Physo130998;Parent=Physo130998;rank=1 scaffold_13 . exon 927798 927953 . + . ID=Physo130998.1;Parent=Physo130998;constitutive=1;rank=1 scaffold_13 . CDS 928022 928286 . + 0 ID=Physo130998;Parent=Physo130998;rank=2 scaffold_13 . exon 928022 928286 . + . ID=Physo130998.2;Parent=Physo130998;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_13 . CDS 928344 928453 . + 0 ID=Physo130998;Parent=Physo130998;rank=3 scaffold_13 . exon 928344 928453 . + . ID=Physo130998.3;Parent=Physo130998;constitutive=1;ensembl_phase=1;rank=3 scaffold_13 . CDS 928476 928652 . + 0 ID=Physo130998;Parent=Physo130998;rank=4 scaffold_13 . exon 928476 928652 . + . ID=Physo130998.4;Parent=Physo130998;constitutive=1;rank=4 scaffold_13 . CDS 928719 929198 . + 0 ID=Physo130998;Parent=Physo130998;rank=5 scaffold_13 . exon 928719 929198 . + . ID=Physo130998.5;Parent=Physo130998;constitutive=1;rank=5 scaffold_13 ensembl protein_coding_gene 930401 931372 . - . ID=Physo131000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130191;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 930401 931372 . - . ID=Physo131000;Parent=Physo131000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 930401 931372 . - . ID=Physo131000.1;Parent=Physo131000;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 930538 931332 . - 0 ID=Physo131000;Parent=Physo131000;rank=1 scaffold_13 . biological_region 930900 930903 0.999 - . logic_name=eponine scaffold_13 . biological_region 939902 939908 0.999 + . logic_name=eponine scaffold_13 ensembl protein_coding_gene 931550 932489 . - . ID=Physo113278;biotype=protein_coding;external_name=estExt_Genewise1.C_130061;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 931550 932489 . - . ID=Physo113278;Parent=Physo113278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . exon 931550 932489 . - . ID=Physo113278.1;Parent=Physo113278;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_13 . CDS 931716 932465 . - 0 ID=Physo113278;Parent=Physo113278;rank=1 scaffold_13 ensembl protein_coding_gene 936153 936749 . + . ID=Physo131002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_130193;logic_name=jgi_physo1_1 scaffold_13 ensembl transcript 936153 936749 . + . ID=Physo131002;Parent=Physo131002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_13 . CDS 936153 936749 . + 0 ID=Physo131002;Parent=Physo131002;rank=1 scaffold_13 . exon 936153 936749 . + . ID=Physo131002.1;Parent=Physo131002;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_15 1 951009 scaffold_15 . biological_region 32 34 0.999 + . logic_name=eponine scaffold_15 . biological_region 82 83 0.999 + . logic_name=eponine scaffold_15 . biological_region 114 115 0.999 - . logic_name=eponine scaffold_15 . repeat_region 853 907 . ? . description=trf scaffold_15 . biological_region 890 895 0.999 - . logic_name=eponine scaffold_15 . biological_region 951 956 0.999 - . logic_name=eponine scaffold_15 . biological_region 977 981 0.999 - . logic_name=eponine scaffold_15 . biological_region 1105 1106 0.999 - . logic_name=eponine scaffold_15 . biological_region 1798 1799 0.999 + . logic_name=eponine scaffold_15 . biological_region 1945 1949 0.999 + . logic_name=eponine scaffold_15 . biological_region 1978 1982 0.999 + . logic_name=eponine scaffold_15 . biological_region 2026 2029 0.999 + . logic_name=eponine scaffold_15 . biological_region 2068 2076 0.999 - . logic_name=eponine scaffold_15 . biological_region 2096 2097 0.999 + . logic_name=eponine scaffold_15 . biological_region 2111 2114 0.999 + . logic_name=eponine scaffold_15 . biological_region 2119 2121 0.999 - . logic_name=eponine scaffold_15 . biological_region 2123 2127 0.999 + . logic_name=eponine scaffold_15 . biological_region 2648 2656 0.999 - . logic_name=eponine scaffold_15 . biological_region 3269 3272 0.999 + . logic_name=eponine scaffold_15 . biological_region 3459 3462 0.999 - . logic_name=eponine scaffold_15 . biological_region 3938 3942 0.999 + . logic_name=eponine scaffold_15 . biological_region 5404 5406 0.999 + . logic_name=eponine scaffold_15 . biological_region 5438 5442 0.999 + . logic_name=eponine scaffold_15 . biological_region 6180 6184 0.999 - . logic_name=eponine scaffold_15 . biological_region 6206 6211 0.999 - . logic_name=eponine scaffold_15 . biological_region 6704 6705 0.999 + . logic_name=eponine scaffold_15 . biological_region 6852 6855 0.999 + . logic_name=eponine scaffold_15 . biological_region 6873 6878 0.999 + . logic_name=eponine scaffold_15 . biological_region 6950 6951 0.999 - . logic_name=eponine scaffold_15 . repeat_region 7272 7286 . ? . description=dust scaffold_15 . biological_region 7581 7586 0.999 + . logic_name=eponine scaffold_15 . biological_region 7656 7660 0.999 + . logic_name=eponine scaffold_15 . biological_region 7990 7992 0.999 + . logic_name=eponine scaffold_15 . biological_region 8059 8061 0.999 - . logic_name=eponine scaffold_15 . biological_region 8073 8076 0.999 + . logic_name=eponine scaffold_15 . biological_region 8094 8097 0.999 - . logic_name=eponine scaffold_15 . biological_region 8297 8302 0.999 + . logic_name=eponine scaffold_15 . biological_region 8485 8490 0.999 + . logic_name=eponine scaffold_15 . biological_region 8538 8541 0.999 + . logic_name=eponine scaffold_15 . repeat_region 8540 8595 . ? . description=trf scaffold_15 . biological_region 8556 8557 0.999 - . logic_name=eponine scaffold_15 . biological_region 8560 8565 0.999 + . logic_name=eponine scaffold_15 . biological_region 8578 8584 0.999 + . logic_name=eponine scaffold_15 . biological_region 8592 8593 0.999 - . logic_name=eponine scaffold_15 . biological_region 8597 8601 0.999 + . logic_name=eponine scaffold_15 . biological_region 8604 8616 0.999 + . logic_name=eponine scaffold_15 . biological_region 8610 8617 0.999 - . logic_name=eponine scaffold_15 . biological_region 8625 8630 0.999 + . logic_name=eponine scaffold_15 . repeat_region 8627 8703 . ? . description=trf scaffold_15 . biological_region 8645 8650 0.999 - . logic_name=eponine scaffold_15 . biological_region 8648 8654 0.999 + . logic_name=eponine scaffold_15 . biological_region 8690 8695 0.999 - . logic_name=eponine scaffold_15 . biological_region 8707 8714 0.999 - . logic_name=eponine scaffold_15 . biological_region 8747 8749 0.999 + . logic_name=eponine scaffold_15 . biological_region 8772 8778 0.999 - . logic_name=eponine scaffold_15 . biological_region 8946 8946 0.999 + . logic_name=eponine scaffold_15 . biological_region 9048 9054 0.999 - . logic_name=eponine scaffold_15 . repeat_region 9174 9186 . ? . description=dust scaffold_15 . biological_region 9223 9227 0.999 + . logic_name=eponine scaffold_15 . biological_region 9296 9299 0.999 + . logic_name=eponine scaffold_15 . biological_region 9297 9297 0.999 - . logic_name=eponine scaffold_15 . biological_region 9320 9321 0.999 + . logic_name=eponine scaffold_15 . biological_region 9346 9348 0.999 - . logic_name=eponine scaffold_15 . biological_region 9356 9364 0.999 - . logic_name=eponine scaffold_15 . biological_region 9371 9376 0.999 + . logic_name=eponine scaffold_15 . biological_region 9406 9407 0.999 - . logic_name=eponine scaffold_15 . biological_region 9560 9562 0.999 + . logic_name=eponine scaffold_15 . biological_region 9637 9638 0.999 - . logic_name=eponine scaffold_15 . biological_region 9690 9693 0.999 + . logic_name=eponine scaffold_15 . biological_region 9715 9718 0.999 - . logic_name=eponine scaffold_15 . biological_region 9745 9751 0.999 - . logic_name=eponine scaffold_15 . repeat_region 9790 9918 . ? . description=trf scaffold_15 . repeat_region 9801 9932 . ? . description=trf scaffold_15 . biological_region 9806 9809 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 118 2274 . + . ID=Physo131230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150001;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 118 2274 . + . ID=Physo131230;Parent=Physo131230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 118 2274 . + 0 ID=Physo131230;Parent=Physo131230;rank=1 scaffold_15 . exon 118 2274 . + . ID=Physo131230.1;Parent=Physo131230;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 2586 6497 . + . ID=Physo131231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150002;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 2586 6497 . + . ID=Physo131231;Parent=Physo131231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 2586 3581 . + 0 ID=Physo131231;Parent=Physo131231;rank=1 scaffold_15 . exon 2586 3581 . + . ID=Physo131231.1;Parent=Physo131231;constitutive=1;rank=1 scaffold_15 . CDS 3711 4685 . + 0 ID=Physo131231;Parent=Physo131231;rank=2 scaffold_15 . exon 3711 4685 . + . ID=Physo131231.2;Parent=Physo131231;constitutive=1;rank=2 scaffold_15 . CDS 4851 6497 . + 0 ID=Physo131231;Parent=Physo131231;rank=3 scaffold_15 . exon 4851 6497 . + . ID=Physo131231.3;Parent=Physo131231;constitutive=1;rank=3 scaffold_15 ensembl protein_coding_gene 6846 10481 . - . ID=Physo131232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150003;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 6846 10481 . - . ID=Physo131232;Parent=Physo131232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 6846 7051 . - 0 ID=Physo131232;Parent=Physo131232;rank=3 scaffold_15 . exon 6846 7051 . - . ID=Physo131232.3;Parent=Physo131232;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 7537 8716 . - 0 ID=Physo131232;Parent=Physo131232;rank=2 scaffold_15 . exon 7537 8716 . - . ID=Physo131232.2;Parent=Physo131232;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 8916 10481 . - 0 ID=Physo131232;Parent=Physo131232;rank=1 scaffold_15 . exon 8916 10481 . - . ID=Physo131232.1;Parent=Physo131232;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 13981 15318 . + . ID=Physo131233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150004;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 13981 15318 . + . ID=Physo131233;Parent=Physo131233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 13981 14629 . + 0 ID=Physo131233;Parent=Physo131233;rank=1 scaffold_15 . exon 13981 14629 . + . ID=Physo131233.1;Parent=Physo131233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 14696 15318 . + 0 ID=Physo131233;Parent=Physo131233;rank=2 scaffold_15 . exon 14696 15318 . + . ID=Physo131233.2;Parent=Physo131233;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . repeat_region 20148 20196 . ? . description=trf scaffold_15 . repeat_region 20182 20239 . ? . description=trf scaffold_15 . biological_region 20219 20222 0.999 - . logic_name=eponine scaffold_15 . biological_region 20246 20250 0.999 - . logic_name=eponine scaffold_15 . biological_region 22060 22063 0.999 - . logic_name=eponine scaffold_15 . repeat_region 22828 22877 . ? . description=dust scaffold_15 . repeat_region 23537 23560 . ? . description=trf scaffold_15 . repeat_region 25423 25473 . ? . description=trf scaffold_15 . repeat_region 26407 26467 . ? . description=trf scaffold_15 . repeat_region 26594 26651 . ? . description=dust scaffold_15 . biological_region 26644 26645 0.999 - . logic_name=eponine scaffold_15 . biological_region 27674 27680 0.999 - . logic_name=eponine scaffold_15 . biological_region 28587 28587 0.999 - . logic_name=eponine scaffold_15 . biological_region 28831 28835 0.999 + . logic_name=eponine scaffold_15 . biological_region 29182 29182 0.999 + . logic_name=eponine scaffold_15 . biological_region 29410 29413 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 23767 24424 . - . ID=Physo131234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150005;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 23767 24424 . - . ID=Physo131234;Parent=Physo131234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 23767 24374 . - 0 ID=Physo131234;Parent=Physo131234;rank=2 scaffold_15 . exon 23767 24374 . - . ID=Physo131234.2;Parent=Physo131234;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 24406 24424 . - 0 ID=Physo131234;Parent=Physo131234;rank=1 scaffold_15 . exon 24406 24424 . - . ID=Physo131234.1;Parent=Physo131234;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 25852 26772 . - . ID=Physo131235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150006;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 25852 26772 . - . ID=Physo131235;Parent=Physo131235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 25852 26251 . - 0 ID=Physo131235;Parent=Physo131235;rank=2 scaffold_15 . exon 25852 26251 . - . ID=Physo131235.2;Parent=Physo131235;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 26315 26772 . - 0 ID=Physo131235;Parent=Physo131235;rank=1 scaffold_15 . exon 26315 26772 . - . ID=Physo131235.1;Parent=Physo131235;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 27373 29911 . + . ID=Physo131236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150007;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 27373 29911 . + . ID=Physo131236;Parent=Physo131236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 27373 27409 . + 0 ID=Physo131236;Parent=Physo131236;rank=1 scaffold_15 . exon 27373 27409 . + . ID=Physo131236.1;Parent=Physo131236;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 27542 27849 . + 0 ID=Physo131236;Parent=Physo131236;rank=2 scaffold_15 . exon 27542 27849 . + . ID=Physo131236.2;Parent=Physo131236;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 27881 28211 . + 0 ID=Physo131236;Parent=Physo131236;rank=3 scaffold_15 . exon 27881 28211 . + . ID=Physo131236.3;Parent=Physo131236;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 28256 29762 . + 0 ID=Physo131236;Parent=Physo131236;rank=4 scaffold_15 . exon 28256 29762 . + . ID=Physo131236.4;Parent=Physo131236;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 29863 29911 . + 0 ID=Physo131236;Parent=Physo131236;rank=5 scaffold_15 . exon 29863 29911 . + . ID=Physo131236.5;Parent=Physo131236;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 ensembl protein_coding_gene 30563 33282 . - . ID=Physo131237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150008;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 30563 33282 . - . ID=Physo131237;Parent=Physo131237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 30563 30995 . - 0 ID=Physo131237;Parent=Physo131237;rank=5 scaffold_15 . exon 30563 30995 . - . ID=Physo131237.5;Parent=Physo131237;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 31063 32565 . - 0 ID=Physo131237;Parent=Physo131237;rank=4 scaffold_15 . exon 31063 32565 . - . ID=Physo131237.4;Parent=Physo131237;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_15 . CDS 32624 32655 . - 0 ID=Physo131237;Parent=Physo131237;rank=3 scaffold_15 . exon 32624 32655 . - . ID=Physo131237.3;Parent=Physo131237;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . CDS 32746 32852 . - 0 ID=Physo131237;Parent=Physo131237;rank=2 scaffold_15 . exon 32746 32852 . - . ID=Physo131237.2;Parent=Physo131237;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 33177 33282 . - 0 ID=Physo131237;Parent=Physo131237;rank=1 scaffold_15 . exon 33177 33282 . - . ID=Physo131237.1;Parent=Physo131237;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 35080 39838 . + . ID=Physo131238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150009;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 35080 39838 . + . ID=Physo131238;Parent=Physo131238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 35080 37231 . + 0 ID=Physo131238;Parent=Physo131238;rank=1 scaffold_15 . exon 35080 37231 . + . ID=Physo131238.1;Parent=Physo131238;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 37267 37782 . + 0 ID=Physo131238;Parent=Physo131238;rank=2 scaffold_15 . exon 37267 37782 . + . ID=Physo131238.2;Parent=Physo131238;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 38116 38439 . + 0 ID=Physo131238;Parent=Physo131238;rank=3 scaffold_15 . exon 38116 38439 . + . ID=Physo131238.3;Parent=Physo131238;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 38923 39118 . + 0 ID=Physo131238;Parent=Physo131238;rank=4 scaffold_15 . exon 38923 39118 . + . ID=Physo131238.4;Parent=Physo131238;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 39380 39524 . + 0 ID=Physo131238;Parent=Physo131238;rank=5 scaffold_15 . exon 39380 39524 . + . ID=Physo131238.5;Parent=Physo131238;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 39695 39838 . + 0 ID=Physo131238;Parent=Physo131238;rank=6 scaffold_15 . biological_region 39757 39760 0.999 + . logic_name=eponine scaffold_15 . biological_region 39784 39786 0.999 + . logic_name=eponine scaffold_15 . repeat_region 39862 39911 . ? . description=dust scaffold_15 . biological_region 40256 40259 0.999 + . logic_name=eponine scaffold_15 . repeat_region 40340 40400 . ? . description=trf scaffold_15 . biological_region 40379 40381 0.999 + . logic_name=eponine scaffold_15 . biological_region 40381 40389 0.999 - . logic_name=eponine scaffold_15 . biological_region 40410 40412 0.999 - . logic_name=eponine scaffold_15 . repeat_region 40713 40762 . ? . description=dust scaffold_15 . biological_region 40866 40867 0.999 - . logic_name=eponine scaffold_15 . biological_region 40886 40890 0.999 - . logic_name=eponine scaffold_15 . biological_region 41034 41041 0.999 - . logic_name=eponine scaffold_15 . biological_region 41257 41261 0.999 - . logic_name=eponine scaffold_15 . biological_region 41272 41274 0.999 + . logic_name=eponine scaffold_15 . biological_region 41319 41324 0.999 - . logic_name=eponine scaffold_15 . biological_region 41527 41532 0.999 + . logic_name=eponine scaffold_15 . biological_region 41554 41558 0.999 + . logic_name=eponine scaffold_15 . biological_region 42376 42381 0.999 - . logic_name=eponine scaffold_15 . biological_region 42383 42386 0.999 + . logic_name=eponine scaffold_15 . biological_region 42391 42391 0.999 - . logic_name=eponine scaffold_15 . biological_region 42428 42436 0.999 + . logic_name=eponine scaffold_15 . biological_region 42474 42482 0.999 - . logic_name=eponine scaffold_15 . biological_region 42522 42525 0.999 - . logic_name=eponine scaffold_15 . biological_region 42553 42558 0.999 - . logic_name=eponine scaffold_15 . biological_region 43154 43156 0.999 + . logic_name=eponine scaffold_15 . biological_region 43549 43553 0.999 + . logic_name=eponine scaffold_15 . repeat_region 43596 43650 . ? . description=trf scaffold_15 . biological_region 43608 43613 0.999 + . logic_name=eponine scaffold_15 . biological_region 44389 44391 0.999 + . logic_name=eponine scaffold_15 . repeat_region 44619 44688 . ? . description=trf scaffold_15 . biological_region 45165 45168 0.999 + . logic_name=eponine scaffold_15 . repeat_region 45249 45309 . ? . description=trf scaffold_15 . biological_region 45288 45290 0.999 + . logic_name=eponine scaffold_15 . biological_region 45290 45298 0.999 - . logic_name=eponine scaffold_15 . biological_region 45319 45321 0.999 - . logic_name=eponine scaffold_15 . repeat_region 45755 45762 . ? . description=dust scaffold_15 . repeat_region 47524 47532 . ? . description=dust scaffold_15 . biological_region 48001 48006 0.999 - . logic_name=eponine scaffold_15 . biological_region 48022 48023 0.999 - . logic_name=eponine scaffold_15 . biological_region 48079 48080 0.999 + . logic_name=eponine scaffold_15 . biological_region 48540 48546 0.999 + . logic_name=eponine scaffold_15 . biological_region 48597 48597 0.999 - . logic_name=eponine scaffold_15 . exon 39695 39838 . + . ID=Physo131238.6;Parent=Physo131238;constitutive=1;rank=6 scaffold_15 ensembl protein_coding_gene 40611 41932 . - . ID=Physo131239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150010;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 40611 41932 . - . ID=Physo131239;Parent=Physo131239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 40611 40633 . - 0 ID=Physo131239;Parent=Physo131239;rank=4 scaffold_15 . exon 40611 40633 . - . ID=Physo131239.4;Parent=Physo131239;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 40905 41024 . - 0 ID=Physo131239;Parent=Physo131239;rank=3 scaffold_15 . exon 40905 41024 . - . ID=Physo131239.3;Parent=Physo131239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 41108 41401 . - 0 ID=Physo131239;Parent=Physo131239;rank=2 scaffold_15 . exon 41108 41401 . - . ID=Physo131239.2;Parent=Physo131239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 41440 41932 . - 0 ID=Physo131239;Parent=Physo131239;rank=1 scaffold_15 . exon 41440 41932 . - . ID=Physo131239.1;Parent=Physo131239;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 42271 44385 . - . ID=Physo131240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150011;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 42271 44385 . - . ID=Physo131240;Parent=Physo131240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 42271 44385 . - 0 ID=Physo131240;Parent=Physo131240;rank=1 scaffold_15 . exon 42271 44385 . - . ID=Physo131240.1;Parent=Physo131240;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 47339 48878 . + . ID=Physo131241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150012;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 47339 48878 . + . ID=Physo131241;Parent=Physo131241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 47339 47396 . + 0 ID=Physo131241;Parent=Physo131241;rank=1 scaffold_15 . exon 47339 47396 . + . ID=Physo131241.1;Parent=Physo131241;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 47718 47972 . + 0 ID=Physo131241;Parent=Physo131241;rank=2 scaffold_15 . exon 47718 47972 . + . ID=Physo131241.2;Parent=Physo131241;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 48077 48436 . + 0 ID=Physo131241;Parent=Physo131241;rank=3 scaffold_15 . exon 48077 48436 . + . ID=Physo131241.3;Parent=Physo131241;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 48494 48654 . + 0 ID=Physo131241;Parent=Physo131241;rank=4 scaffold_15 . exon 48494 48654 . + . ID=Physo131241.4;Parent=Physo131241;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 48828 48878 . + 0 ID=Physo131241;Parent=Physo131241;rank=5 scaffold_15 . exon 48828 48878 . + . ID=Physo131241.5;Parent=Physo131241;constitutive=1;rank=5 scaffold_15 ensembl protein_coding_gene 52315 54615 . + . ID=Physo131242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150013;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 52315 54615 . + . ID=Physo131242;Parent=Physo131242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 52315 52843 . + 0 ID=Physo131242;Parent=Physo131242;rank=1 scaffold_15 . exon 52315 52843 . + . ID=Physo131242.1;Parent=Physo131242;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 52933 53601 . + 0 ID=Physo131242;Parent=Physo131242;rank=2 scaffold_15 . exon 52933 53601 . + . ID=Physo131242.2;Parent=Physo131242;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 54061 54104 . + 0 ID=Physo131242;Parent=Physo131242;rank=3 scaffold_15 . exon 54061 54104 . + . ID=Physo131242.3;Parent=Physo131242;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 54233 54364 . + 0 ID=Physo131242;Parent=Physo131242;rank=4 scaffold_15 . exon 54233 54364 . + . ID=Physo131242.4;Parent=Physo131242;constitutive=1;rank=4 scaffold_15 . CDS 54385 54615 . + 0 ID=Physo131242;Parent=Physo131242;rank=5 scaffold_15 . exon 54385 54615 . + . ID=Physo131242.5;Parent=Physo131242;constitutive=1;rank=5 scaffold_15 ensembl protein_coding_gene 55267 58177 . - . ID=Physo131243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150014;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 55267 58177 . - . ID=Physo131243;Parent=Physo131243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 55267 55479 . - 0 ID=Physo131243;Parent=Physo131243;rank=8 scaffold_15 . exon 55267 55479 . - . ID=Physo131243.8;Parent=Physo131243;constitutive=1;rank=8 scaffold_15 . CDS 55500 55631 . - 0 ID=Physo131243;Parent=Physo131243;rank=7 scaffold_15 . exon 55500 55631 . - . ID=Physo131243.7;Parent=Physo131243;constitutive=1;rank=7 scaffold_15 . CDS 55720 56274 . - 0 ID=Physo131243;Parent=Physo131243;rank=6 scaffold_15 . exon 55720 56274 . - . ID=Physo131243.6;Parent=Physo131243;constitutive=1;rank=6 scaffold_15 . CDS 56297 56945 . - 0 ID=Physo131243;Parent=Physo131243;rank=5 scaffold_15 . exon 56297 56945 . - . ID=Physo131243.5;Parent=Physo131243;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 57242 57274 . - 0 ID=Physo131243;Parent=Physo131243;rank=4 scaffold_15 . exon 57242 57274 . - . ID=Physo131243.4;Parent=Physo131243;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_15 . CDS 57496 57656 . - 0 ID=Physo131243;Parent=Physo131243;rank=3 scaffold_15 . exon 57496 57656 . - . ID=Physo131243.3;Parent=Physo131243;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . CDS 57796 58021 . - 0 ID=Physo131243;Parent=Physo131243;rank=2 scaffold_15 . exon 57796 58021 . - . ID=Physo131243.2;Parent=Physo131243;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 58089 58177 . - 0 ID=Physo131243;Parent=Physo131243;rank=1 scaffold_15 . exon 58089 58177 . - . ID=Physo131243.1;Parent=Physo131243;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . repeat_region 61586 61595 . ? . description=dust scaffold_15 . repeat_region 63250 63260 . ? . description=dust scaffold_15 . biological_region 65700 65700 0.999 - . logic_name=eponine scaffold_15 . repeat_region 66215 66253 . ? . description=trf scaffold_15 . repeat_region 67167 67202 . ? . description=trf scaffold_15 . biological_region 69138 69140 0.999 + . logic_name=eponine scaffold_15 . biological_region 69272 69281 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 67500 68998 . + . ID=Physo113641;biotype=protein_coding;external_name=estExt_Genewise1.C_150163;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 67500 68998 . + . ID=Physo113641;Parent=Physo113641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 67500 67604 . + 0 ID=Physo113641;Parent=Physo113641;rank=1 scaffold_15 . exon 67500 67604 . + . ID=Physo113641.1;Parent=Physo113641;constitutive=1;rank=1 scaffold_15 . CDS 67678 68001 . + 0 ID=Physo113641;Parent=Physo113641;rank=2 scaffold_15 . exon 67678 68001 . + . ID=Physo113641.2;Parent=Physo113641;constitutive=1;rank=2 scaffold_15 . CDS 68090 68397 . + 0 ID=Physo113641;Parent=Physo113641;rank=3 scaffold_15 . exon 68090 68397 . + . ID=Physo113641.3;Parent=Physo113641;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . CDS 68468 68655 . + 0 ID=Physo113641;Parent=Physo113641;rank=4 scaffold_15 . exon 68468 68655 . + . ID=Physo113641.4;Parent=Physo113641;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 68731 68837 . + 0 ID=Physo113641;Parent=Physo113641;rank=5 scaffold_15 . exon 68731 68998 . + . ID=Physo113641.5;Parent=Physo113641;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_15 ensembl protein_coding_gene 59957 61365 . + . ID=Physo131244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150015;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 59957 61365 . + . ID=Physo131244;Parent=Physo131244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 59957 60566 . + 0 ID=Physo131244;Parent=Physo131244;rank=1 scaffold_15 . exon 59957 60566 . + . ID=Physo131244.1;Parent=Physo131244;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 60621 60625 . + 0 ID=Physo131244;Parent=Physo131244;rank=2 scaffold_15 . exon 60621 60625 . + . ID=Physo131244.2;Parent=Physo131244;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 60877 61365 . + 0 ID=Physo131244;Parent=Physo131244;rank=3 scaffold_15 . exon 60877 61365 . + . ID=Physo131244.3;Parent=Physo131244;constitutive=1;rank=3 scaffold_15 . repeat_region 77912 78044 . + . description=Sola3-2_PS scaffold_15 ensembl protein_coding_gene 74870 75607 . + . ID=Physo108533;biotype=protein_coding;description=Elicitin-like protein SOL1A [Source:UniProtKB/TrEMBL%3BAcc:Q2N062];external_name=estExt_fgenesh1_pm.C_150002;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 74870 75607 . + . ID=Physo108533;Parent=Physo108533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 74870 75607 . + . ID=Physo108533.1;Parent=Physo108533;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 74901 75524 . + 0 ID=Physo108533;Parent=Physo108533;rank=1 scaffold_15 ensembl protein_coding_gene 70819 73335 . + . ID=Physo131246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150017;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 70819 73335 . + . ID=Physo131246;Parent=Physo131246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 70819 73335 . + 0 ID=Physo131246;Parent=Physo131246;rank=1 scaffold_15 . exon 70819 73335 . + . ID=Physo131246.1;Parent=Physo131246;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 76267 79795 . + . ID=Physo131248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150019;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 76267 79795 . + . ID=Physo131248;Parent=Physo131248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 76267 76330 . + 0 ID=Physo131248;Parent=Physo131248;rank=1 scaffold_15 . exon 76267 76330 . + . ID=Physo131248.1;Parent=Physo131248;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 76432 78199 . + 0 ID=Physo131248;Parent=Physo131248;rank=2 scaffold_15 . exon 76432 78199 . + . ID=Physo131248.2;Parent=Physo131248;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 78489 78692 . + 0 ID=Physo131248;Parent=Physo131248;rank=3 scaffold_15 . exon 78489 78692 . + . ID=Physo131248.3;Parent=Physo131248;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_15 . CDS 78768 78848 . + 0 ID=Physo131248;Parent=Physo131248;rank=4 scaffold_15 . exon 78768 78848 . + . ID=Physo131248.4;Parent=Physo131248;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_15 . CDS 78905 79000 . + 0 ID=Physo131248;Parent=Physo131248;rank=5 scaffold_15 . exon 78905 79000 . + . ID=Physo131248.5;Parent=Physo131248;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_15 . CDS 79035 79191 . + 0 ID=Physo131248;Parent=Physo131248;rank=6 scaffold_15 . exon 79035 79191 . + . ID=Physo131248.6;Parent=Physo131248;constitutive=1;ensembl_phase=2;rank=6 scaffold_15 . CDS 79214 79795 . + 0 ID=Physo131248;Parent=Physo131248;rank=7 scaffold_15 . exon 79214 79795 . + . ID=Physo131248.7;Parent=Physo131248;constitutive=1;rank=7 scaffold_15 . biological_region 79498 79507 0.999 - . logic_name=eponine scaffold_15 . biological_region 79531 79532 0.999 - . logic_name=eponine scaffold_15 . biological_region 79556 79560 0.999 - . logic_name=eponine scaffold_15 . biological_region 79590 79593 0.999 - . logic_name=eponine scaffold_15 . biological_region 79745 79745 0.999 - . logic_name=eponine scaffold_15 . biological_region 80908 80909 0.999 - . logic_name=eponine scaffold_15 . biological_region 81152 81154 0.999 + . logic_name=eponine scaffold_15 . repeat_region 81379 81386 . ? . description=dust scaffold_15 . biological_region 81872 81874 0.999 + . logic_name=eponine scaffold_15 . repeat_region 81914 81950 . ? . description=dust scaffold_15 . biological_region 82473 82473 0.999 + . logic_name=eponine scaffold_15 . biological_region 82789 82792 0.999 - . logic_name=eponine scaffold_15 . biological_region 82844 82846 0.999 + . logic_name=eponine scaffold_15 . biological_region 82867 82872 0.999 + . logic_name=eponine scaffold_15 . repeat_region 83002 83020 . ? . description=dust scaffold_15 . biological_region 84029 84036 0.999 + . logic_name=eponine scaffold_15 . biological_region 84194 84196 0.999 - . logic_name=eponine scaffold_15 . biological_region 84245 84247 0.999 - . logic_name=eponine scaffold_15 . biological_region 84270 84272 0.999 - . logic_name=eponine scaffold_15 . biological_region 85112 85119 0.999 + . logic_name=eponine scaffold_15 . biological_region 88196 88198 0.999 + . logic_name=eponine scaffold_15 . repeat_region 88348 88509 . + . description=GypsyPi-1c_I-int scaffold_15 ensembl protein_coding_gene 83879 85550 . - . ID=Physo108534;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150003;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 83879 85550 . - . ID=Physo108534;Parent=Physo108534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 83879 85550 . - . ID=Physo108534.1;Parent=Physo108534;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . CDS 83970 85550 . - 0 ID=Physo108534;Parent=Physo108534;rank=1 scaffold_15 ensembl protein_coding_gene 80032 83670 . - . ID=Physo131249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150020;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 80032 83670 . - . ID=Physo131249;Parent=Physo131249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 80032 81376 . - 0 ID=Physo131249;Parent=Physo131249;rank=3 scaffold_15 . exon 80032 81376 . - . ID=Physo131249.3;Parent=Physo131249;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 81733 83524 . - 0 ID=Physo131249;Parent=Physo131249;rank=2 scaffold_15 . exon 81733 83524 . - . ID=Physo131249.2;Parent=Physo131249;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 83589 83670 . - 0 ID=Physo131249;Parent=Physo131249;rank=1 scaffold_15 . exon 83589 83670 . - . ID=Physo131249.1;Parent=Physo131249;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 88118 91500 . + . ID=Physo131251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150022;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 88118 91500 . + . ID=Physo131251;Parent=Physo131251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 88118 89093 . + 0 ID=Physo131251;Parent=Physo131251;rank=1 scaffold_15 . exon 88118 89093 . + . ID=Physo131251.1;Parent=Physo131251;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 89399 89519 . + 0 ID=Physo131251;Parent=Physo131251;rank=2 scaffold_15 . CDS 89652 89815 . + 0 ID=Physo131251;Parent=Physo131251;rank=3 scaffold_15 . CDS 89845 89866 . + 0 ID=Physo131251;Parent=Physo131251;rank=4 scaffold_15 . CDS 89958 91500 . + 0 ID=Physo131251;Parent=Physo131251;rank=5 scaffold_15 . repeat_region 96996 97065 . + . description=(CTG)n scaffold_15 . repeat_region 96999 97056 . ? . description=trf scaffold_15 . repeat_region 96999 97065 . ? . description=trf scaffold_15 . repeat_region 97001 97065 . ? . description=trf scaffold_15 . repeat_region 97894 97918 . ? . description=trf scaffold_15 . exon 89399 89519 . + . ID=Physo131251.2;Parent=Physo131251;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . exon 89652 89815 . + . ID=Physo131251.3;Parent=Physo131251;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_15 . exon 89845 89866 . + . ID=Physo131251.4;Parent=Physo131251;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . exon 89958 91500 . + . ID=Physo131251.5;Parent=Physo131251;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 ensembl protein_coding_gene 91855 93402 . - . ID=Physo131252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150023;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 91855 93402 . - . ID=Physo131252;Parent=Physo131252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 91855 93402 . - 0 ID=Physo131252;Parent=Physo131252;rank=1 scaffold_15 . exon 91855 93402 . - . ID=Physo131252.1;Parent=Physo131252;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 96301 98002 . - . ID=Physo131253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150024;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 96301 98002 . - . ID=Physo131253;Parent=Physo131253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 96301 97146 . - 0 ID=Physo131253;Parent=Physo131253;rank=4 scaffold_15 . exon 96301 97146 . - . ID=Physo131253.4;Parent=Physo131253;constitutive=1;rank=4 scaffold_15 . CDS 97205 97289 . - 0 ID=Physo131253;Parent=Physo131253;rank=3 scaffold_15 . exon 97205 97289 . - . ID=Physo131253.3;Parent=Physo131253;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 97367 97437 . - 0 ID=Physo131253;Parent=Physo131253;rank=2 scaffold_15 . exon 97367 97437 . - . ID=Physo131253.2;Parent=Physo131253;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_15 . CDS 97916 98002 . - 0 ID=Physo131253;Parent=Physo131253;rank=1 scaffold_15 . exon 97916 98002 . - . ID=Physo131253.1;Parent=Physo131253;constitutive=1;rank=1 scaffold_15 . repeat_region 99060 99077 . ? . description=dust scaffold_15 . repeat_region 99540 99547 . ? . description=dust scaffold_15 . biological_region 100205 100211 0.999 + . logic_name=eponine scaffold_15 . biological_region 100270 100275 0.999 + . logic_name=eponine scaffold_15 . biological_region 100280 100289 0.999 - . logic_name=eponine scaffold_15 . biological_region 100305 100305 0.999 - . logic_name=eponine scaffold_15 . biological_region 100331 100335 0.999 - . logic_name=eponine scaffold_15 . biological_region 107066 107068 0.999 + . logic_name=eponine scaffold_15 . biological_region 107179 107180 0.999 - . logic_name=eponine scaffold_15 . biological_region 108717 108720 0.999 + . logic_name=eponine scaffold_15 . biological_region 108728 108733 0.999 - . logic_name=eponine scaffold_15 . biological_region 108734 108734 0.999 + . logic_name=eponine scaffold_15 . biological_region 108766 108768 0.999 + . logic_name=eponine scaffold_15 . biological_region 108782 108790 0.999 + . logic_name=eponine scaffold_15 . biological_region 108842 108852 0.999 - . logic_name=eponine scaffold_15 . biological_region 108957 108966 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 100044 101273 . + . ID=Physo131254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150025;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 100044 101273 . + . ID=Physo131254;Parent=Physo131254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 100044 100108 . + . ID=Physo131254.1;Parent=Physo131254;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . exon 100170 101273 . + . ID=Physo131254.2;Parent=Physo131254;constitutive=1;ensembl_phase=-1;rank=2 scaffold_15 . CDS 100182 101273 . + 0 ID=Physo131254;Parent=Physo131254;rank=1 scaffold_15 ensembl protein_coding_gene 102694 104644 . + . ID=Physo131255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150026;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 102694 104644 . + . ID=Physo131255;Parent=Physo131255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 102694 103510 . + 0 ID=Physo131255;Parent=Physo131255;rank=1 scaffold_15 . exon 102694 103510 . + . ID=Physo131255.1;Parent=Physo131255;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 103770 104644 . + 0 ID=Physo131255;Parent=Physo131255;rank=2 scaffold_15 . exon 103770 104644 . + . ID=Physo131255.2;Parent=Physo131255;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 106333 106960 . + . ID=Physo131256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150027;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 106333 106960 . + . ID=Physo131256;Parent=Physo131256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 106333 106362 . + 0 ID=Physo131256;Parent=Physo131256;rank=1 scaffold_15 . exon 106333 106362 . + . ID=Physo131256.1;Parent=Physo131256;constitutive=1;rank=1 scaffold_15 . CDS 106418 106960 . + 0 ID=Physo131256;Parent=Physo131256;rank=2 scaffold_15 . exon 106418 106960 . + . ID=Physo131256.2;Parent=Physo131256;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 111599 112669 . - . ID=Physo131258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150029;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 111599 112669 . - . ID=Physo131258;Parent=Physo131258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 111599 111602 . - 0 ID=Physo131258;Parent=Physo131258;rank=2 scaffold_15 . exon 111599 111602 . - . ID=Physo131258.2;Parent=Physo131258;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 111927 112669 . - 0 ID=Physo131258;Parent=Physo131258;rank=1 scaffold_15 . exon 111927 112669 . - . ID=Physo131258.1;Parent=Physo131258;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 112853 115102 . + . ID=Physo131259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150030;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 112853 115102 . + . ID=Physo131259;Parent=Physo131259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 112853 115102 . + 0 ID=Physo131259;Parent=Physo131259;rank=1 scaffold_15 . exon 112853 115102 . + . ID=Physo131259.1;Parent=Physo131259;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 115297 116728 . + . ID=Physo131260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150031;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 115297 116728 . + . ID=Physo131260;Parent=Physo131260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 115297 115435 . + . ID=Physo131260.1;Parent=Physo131260;constitutive=1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 115331 115435 . + 0 ID=Physo131260;Parent=Physo131260;rank=1 scaffold_15 . CDS 115516 115821 . + 0 ID=Physo131260;Parent=Physo131260;rank=2 scaffold_15 . exon 115516 115821 . + . ID=Physo131260.2;Parent=Physo131260;constitutive=1;rank=2 scaffold_15 . CDS 115933 116471 . + 0 ID=Physo131260;Parent=Physo131260;rank=3 scaffold_15 . exon 115933 116471 . + . ID=Physo131260.3;Parent=Physo131260;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . CDS 116557 116728 . + 0 ID=Physo131260;Parent=Physo131260;rank=4 scaffold_15 . exon 116557 116728 . + . ID=Physo131260.4;Parent=Physo131260;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 ensembl protein_coding_gene 116744 118536 . - . ID=Physo131261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150032;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 116744 118536 . - . ID=Physo131261;Parent=Physo131261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 116744 118536 . - . ID=Physo131261.1;Parent=Physo131261;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . CDS 116851 118536 . - 0 ID=Physo131261;Parent=Physo131261;rank=1 scaffold_15 ensembl protein_coding_gene 109382 109882 . + . ID=Physo156233;biotype=protein_coding;external_name=C_scaffold_15000003;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 109382 109882 . + . ID=Physo156233;Parent=Physo156233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 109382 109882 . + 0 ID=Physo156233;Parent=Physo156233;rank=1 scaffold_15 . exon 109382 109882 . + . ID=Physo156233.1;Parent=Physo156233;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 110324 110892 . + . ID=Physo156235;biotype=protein_coding;external_name=C_scaffold_15000005;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 110324 110892 . + . ID=Physo156235;Parent=Physo156235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 110324 110399 . + 0 ID=Physo156235;Parent=Physo156235;rank=1 scaffold_15 . exon 110324 110399 . + . ID=Physo156235.1;Parent=Physo156235;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 110458 110567 . + 0 ID=Physo156235;Parent=Physo156235;rank=2 scaffold_15 . exon 110458 110567 . + . ID=Physo156235.2;Parent=Physo156235;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 110637 110708 . + 0 ID=Physo156235;Parent=Physo156235;rank=3 scaffold_15 . exon 110637 110708 . + . ID=Physo156235.3;Parent=Physo156235;constitutive=1;rank=3 scaffold_15 . CDS 110788 110892 . + 0 ID=Physo156235;Parent=Physo156235;rank=4 scaffold_15 . exon 110788 110892 . + . ID=Physo156235.4;Parent=Physo156235;constitutive=1;rank=4 scaffold_15 . repeat_region 119098 119120 . ? . description=trf scaffold_15 . repeat_region 120520 120569 . ? . description=dust scaffold_15 . repeat_region 122727 122749 . ? . description=trf scaffold_15 . repeat_region 123239 123251 . ? . description=dust scaffold_15 . biological_region 124184 124186 0.999 - . logic_name=eponine scaffold_15 . biological_region 124466 124470 0.999 - . logic_name=eponine scaffold_15 . biological_region 124845 124848 0.999 + . logic_name=eponine scaffold_15 . biological_region 128546 128547 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 119177 120694 . + . ID=Physo131262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150033;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 119177 120694 . + . ID=Physo131262;Parent=Physo131262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 119177 120511 . + 0 ID=Physo131262;Parent=Physo131262;rank=1 scaffold_15 . exon 119177 120511 . + . ID=Physo131262.1;Parent=Physo131262;constitutive=1;rank=1 scaffold_15 . CDS 120680 120694 . + 0 ID=Physo131262;Parent=Physo131262;rank=2 scaffold_15 . exon 120680 120694 . + . ID=Physo131262.2;Parent=Physo131262;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 121009 122670 . - . ID=Physo131263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150034;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 121009 122670 . - . ID=Physo131263;Parent=Physo131263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 121009 122670 . - . ID=Physo131263.1;Parent=Physo131263;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 121678 122574 . - 0 ID=Physo131263;Parent=Physo131263;rank=1 scaffold_15 ensembl protein_coding_gene 123311 126597 . + . ID=Physo131264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150035;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 123311 126597 . + . ID=Physo131264;Parent=Physo131264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 123311 124964 . + 0 ID=Physo131264;Parent=Physo131264;rank=1 scaffold_15 . exon 123311 124964 . + . ID=Physo131264.1;Parent=Physo131264;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 125432 125775 . + 0 ID=Physo131264;Parent=Physo131264;rank=2 scaffold_15 . exon 125432 125775 . + . ID=Physo131264.2;Parent=Physo131264;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 125851 126597 . + 0 ID=Physo131264;Parent=Physo131264;rank=3 scaffold_15 . exon 125851 126597 . + . ID=Physo131264.3;Parent=Physo131264;constitutive=1;rank=3 scaffold_15 ensembl protein_coding_gene 126679 134514 . - . ID=Physo131265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150036;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 126679 134514 . - . ID=Physo131265;Parent=Physo131265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 126679 127173 . - 0 ID=Physo131265;Parent=Physo131265;rank=11 scaffold_15 . exon 126679 127173 . - . ID=Physo131265.11;Parent=Physo131265;constitutive=1;rank=11 scaffold_15 . CDS 127254 127850 . - 0 ID=Physo131265;Parent=Physo131265;rank=10 scaffold_15 . exon 127254 127850 . - . ID=Physo131265.10;Parent=Physo131265;constitutive=1;rank=10 scaffold_15 . CDS 128006 128993 . - 0 ID=Physo131265;Parent=Physo131265;rank=9 scaffold_15 . exon 128006 128993 . - . ID=Physo131265.9;Parent=Physo131265;constitutive=1;ensembl_phase=2;rank=9 scaffold_15 . CDS 129068 129535 . - 0 ID=Physo131265;Parent=Physo131265;rank=8 scaffold_15 . CDS 129796 130835 . - 0 ID=Physo131265;Parent=Physo131265;rank=7 scaffold_15 . CDS 130914 131018 . - 0 ID=Physo131265;Parent=Physo131265;rank=6 scaffold_15 . CDS 131101 131133 . - 0 ID=Physo131265;Parent=Physo131265;rank=5 scaffold_15 . CDS 131520 131523 . - 0 ID=Physo131265;Parent=Physo131265;rank=4 scaffold_15 . CDS 131722 131945 . - 0 ID=Physo131265;Parent=Physo131265;rank=3 scaffold_15 . CDS 132022 134248 . - 0 ID=Physo131265;Parent=Physo131265;rank=2 scaffold_15 . CDS 134408 134514 . - 0 ID=Physo131265;Parent=Physo131265;rank=1 scaffold_15 . exon 129068 129535 . - . ID=Physo131265.8;Parent=Physo131265;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_15 . exon 129796 130835 . - . ID=Physo131265.7;Parent=Physo131265;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_15 . exon 130914 131018 . - . ID=Physo131265.6;Parent=Physo131265;constitutive=1;rank=6 scaffold_15 . exon 131101 131133 . - . ID=Physo131265.5;Parent=Physo131265;constitutive=1;rank=5 scaffold_15 . exon 131520 131523 . - . ID=Physo131265.4;Parent=Physo131265;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . exon 131722 131945 . - . ID=Physo131265.3;Parent=Physo131265;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . exon 132022 134248 . - . ID=Physo131265.2;Parent=Physo131265;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . exon 134408 134514 . - . ID=Physo131265.1;Parent=Physo131265;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . repeat_region 140622 140648 . ? . description=trf scaffold_15 . biological_region 142159 142162 0.999 + . logic_name=eponine scaffold_15 . biological_region 142489 142490 0.999 - . logic_name=eponine scaffold_15 . biological_region 142509 142512 0.999 - . logic_name=eponine scaffold_15 . repeat_region 143319 143379 . ? . description=trf scaffold_15 . biological_region 143554 143555 0.999 + . logic_name=eponine scaffold_15 . biological_region 143618 143620 0.999 + . logic_name=eponine scaffold_15 . biological_region 143643 143644 0.999 - . logic_name=eponine scaffold_15 . biological_region 143917 143918 0.999 + . logic_name=eponine scaffold_15 . biological_region 144514 144517 0.999 - . logic_name=eponine scaffold_15 . biological_region 148519 148520 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 142016 142753 . + . ID=Physo131266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150037;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 142016 142753 . + . ID=Physo131266;Parent=Physo131266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 142016 142753 . + 0 ID=Physo131266;Parent=Physo131266;rank=1 scaffold_15 . exon 142016 142753 . + . ID=Physo131266.1;Parent=Physo131266;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 143472 145213 . + . ID=Physo131267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150038;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 143472 145213 . + . ID=Physo131267;Parent=Physo131267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 143472 143480 . + 0 ID=Physo131267;Parent=Physo131267;rank=1 scaffold_15 . exon 143472 143480 . + . ID=Physo131267.1;Parent=Physo131267;constitutive=1;rank=1 scaffold_15 . CDS 143558 145066 . + 0 ID=Physo131267;Parent=Physo131267;rank=2 scaffold_15 . exon 143558 145213 . + . ID=Physo131267.2;Parent=Physo131267;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_15 ensembl protein_coding_gene 145191 150422 . - . ID=Physo156239;biotype=protein_coding;external_name=C_scaffold_15000009;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 145191 150422 . - . ID=Physo156239;Parent=Physo156239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 145191 145341 . - 0 ID=Physo156239;Parent=Physo156239;rank=16 scaffold_15 . exon 145191 145341 . - . ID=Physo156239.16;Parent=Physo156239;constitutive=1;ensembl_phase=2;rank=16 scaffold_15 . CDS 145618 145886 . - 0 ID=Physo156239;Parent=Physo156239;rank=15 scaffold_15 . exon 145618 145886 . - . ID=Physo156239.15;Parent=Physo156239;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_15 . CDS 145959 146369 . - 0 ID=Physo156239;Parent=Physo156239;rank=14 scaffold_15 . exon 145959 146369 . - . ID=Physo156239.14;Parent=Physo156239;constitutive=1;rank=14 scaffold_15 . CDS 146514 146618 . - 0 ID=Physo156239;Parent=Physo156239;rank=13 scaffold_15 . exon 146514 146618 . - . ID=Physo156239.13;Parent=Physo156239;constitutive=1;rank=13 scaffold_15 . CDS 146679 146836 . - 0 ID=Physo156239;Parent=Physo156239;rank=12 scaffold_15 . exon 146679 146836 . - . ID=Physo156239.12;Parent=Physo156239;constitutive=1;ensembl_phase=1;rank=12 scaffold_15 . CDS 146864 147064 . - 0 ID=Physo156239;Parent=Physo156239;rank=11 scaffold_15 . exon 146864 147064 . - . ID=Physo156239.11;Parent=Physo156239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_15 . CDS 147119 147157 . - 0 ID=Physo156239;Parent=Physo156239;rank=10 scaffold_15 . exon 147119 147157 . - . ID=Physo156239.10;Parent=Physo156239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_15 . CDS 147344 147460 . - 0 ID=Physo156239;Parent=Physo156239;rank=9 scaffold_15 . exon 147344 147460 . - . ID=Physo156239.9;Parent=Physo156239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_15 . CDS 147566 147691 . - 0 ID=Physo156239;Parent=Physo156239;rank=8 scaffold_15 . exon 147566 147691 . - . ID=Physo156239.8;Parent=Physo156239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_15 . CDS 147869 148435 . - 0 ID=Physo156239;Parent=Physo156239;rank=7 scaffold_15 . exon 147869 148435 . - . ID=Physo156239.7;Parent=Physo156239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_15 . CDS 148457 148998 . - 0 ID=Physo156239;Parent=Physo156239;rank=6 scaffold_15 . exon 148457 148998 . - . ID=Physo156239.6;Parent=Physo156239;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_15 . CDS 149044 149637 . - 0 ID=Physo156239;Parent=Physo156239;rank=5 scaffold_15 . CDS 149665 149848 . - 0 ID=Physo156239;Parent=Physo156239;rank=4 scaffold_15 . CDS 149879 149945 . - 0 ID=Physo156239;Parent=Physo156239;rank=3 scaffold_15 . CDS 150000 150273 . - 0 ID=Physo156239;Parent=Physo156239;rank=2 scaffold_15 . CDS 150301 150422 . - 0 ID=Physo156239;Parent=Physo156239;rank=1 scaffold_15 . repeat_region 150055 150082 . ? . description=dust scaffold_15 . repeat_region 157578 157609 . ? . description=dust scaffold_15 ensembl protein_coding_gene 150693 152177 . + . ID=Physo131269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150040;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 150693 152177 . + . ID=Physo131269;Parent=Physo131269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 150693 150752 . + . ID=Physo131269.1;Parent=Physo131269;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 150743 150752 . + 0 ID=Physo131269;Parent=Physo131269;rank=1 scaffold_15 . CDS 151120 151168 . + 0 ID=Physo131269;Parent=Physo131269;rank=2 scaffold_15 . exon 151120 151168 . + . ID=Physo131269.2;Parent=Physo131269;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 151270 151996 . + 0 ID=Physo131269;Parent=Physo131269;rank=3 scaffold_15 . exon 151270 152177 . + . ID=Physo131269.3;Parent=Physo131269;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_15 ensembl protein_coding_gene 152433 152940 . + . ID=Physo131270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150041;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 152433 152940 . + . ID=Physo131270;Parent=Physo131270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 152433 152720 . + 0 ID=Physo131270;Parent=Physo131270;rank=1 scaffold_15 . exon 152433 152720 . + . ID=Physo131270.1;Parent=Physo131270;constitutive=1;rank=1 scaffold_15 . CDS 152872 152940 . + 0 ID=Physo131270;Parent=Physo131270;rank=2 scaffold_15 . exon 152872 152940 . + . ID=Physo131270.2;Parent=Physo131270;constitutive=1;rank=2 scaffold_15 . exon 149044 149637 . - . ID=Physo156239.5;Parent=Physo156239;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_15 . exon 149665 149848 . - . ID=Physo156239.4;Parent=Physo156239;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . exon 149879 149945 . - . ID=Physo156239.3;Parent=Physo156239;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . exon 150000 150273 . - . ID=Physo156239.2;Parent=Physo156239;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . exon 150301 150422 . - . ID=Physo156239.1;Parent=Physo156239;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 154301 159049 . + . ID=Physo156241;biotype=protein_coding;external_name=C_scaffold_15000011;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 154301 159049 . + . ID=Physo156241;Parent=Physo156241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 154301 155541 . + 0 ID=Physo156241;Parent=Physo156241;rank=1 scaffold_15 . exon 154301 155541 . + . ID=Physo156241.1;Parent=Physo156241;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 156109 159049 . + 0 ID=Physo156241;Parent=Physo156241;rank=2 scaffold_15 . exon 156109 159049 . + . ID=Physo156241.2;Parent=Physo156241;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . biological_region 158874 158881 0.999 + . logic_name=eponine scaffold_15 . biological_region 158899 158900 0.999 + . logic_name=eponine scaffold_15 . biological_region 158965 158977 0.999 - . logic_name=eponine scaffold_15 . biological_region 159112 159114 0.999 - . logic_name=eponine scaffold_15 . biological_region 159166 159171 0.999 + . logic_name=eponine scaffold_15 . biological_region 159617 159617 0.999 - . logic_name=eponine scaffold_15 . biological_region 161367 161372 0.999 - . logic_name=eponine scaffold_15 . biological_region 161599 161599 0.999 + . logic_name=eponine scaffold_15 . biological_region 161640 161640 0.999 - . logic_name=eponine scaffold_15 . biological_region 161867 161871 0.999 + . logic_name=eponine scaffold_15 . biological_region 161894 161902 0.999 + . logic_name=eponine scaffold_15 . biological_region 161919 161927 0.999 - . logic_name=eponine scaffold_15 . biological_region 161929 161936 0.999 + . logic_name=eponine scaffold_15 . biological_region 161936 161943 0.999 - . logic_name=eponine scaffold_15 . biological_region 161993 161995 0.999 + . logic_name=eponine scaffold_15 . biological_region 162063 162069 0.999 - . logic_name=eponine scaffold_15 . biological_region 162831 162835 0.999 + . logic_name=eponine scaffold_15 . biological_region 163490 163492 0.999 - . logic_name=eponine scaffold_15 . biological_region 163516 163517 0.999 + . logic_name=eponine scaffold_15 . biological_region 163704 163706 0.999 - . logic_name=eponine scaffold_15 . biological_region 163711 163716 0.999 - . logic_name=eponine scaffold_15 . biological_region 165069 165072 0.999 + . logic_name=eponine scaffold_15 . biological_region 165090 165095 0.999 + . logic_name=eponine scaffold_15 . biological_region 165111 165117 0.999 + . logic_name=eponine scaffold_15 . biological_region 165140 165144 0.999 + . logic_name=eponine scaffold_15 . biological_region 165167 165174 0.999 - . logic_name=eponine scaffold_15 . biological_region 165172 165173 0.999 + . logic_name=eponine scaffold_15 . biological_region 165192 165196 0.999 - . logic_name=eponine scaffold_15 . biological_region 165243 165246 0.999 - . logic_name=eponine scaffold_15 . biological_region 165261 165267 0.999 - . logic_name=eponine scaffold_15 . biological_region 165315 165315 0.999 - . logic_name=eponine scaffold_15 . biological_region 165404 165408 0.999 + . logic_name=eponine scaffold_15 . biological_region 165479 165483 0.999 - . logic_name=eponine scaffold_15 . biological_region 165481 165484 0.999 + . logic_name=eponine scaffold_15 . biological_region 165490 165492 0.999 - . logic_name=eponine scaffold_15 . biological_region 165598 165602 0.999 - . logic_name=eponine scaffold_15 . biological_region 165650 165658 0.999 + . logic_name=eponine scaffold_15 . biological_region 165721 165725 0.999 - . logic_name=eponine scaffold_15 . biological_region 165784 165787 0.999 + . logic_name=eponine scaffold_15 . biological_region 165987 165990 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 160834 162370 . + . ID=Physo131272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150043;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 160834 162370 . + . ID=Physo131272;Parent=Physo131272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 160834 160931 . + 0 ID=Physo131272;Parent=Physo131272;rank=1 scaffold_15 . exon 160834 160931 . + . ID=Physo131272.1;Parent=Physo131272;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 161124 162309 . + 0 ID=Physo131272;Parent=Physo131272;rank=2 scaffold_15 . exon 161124 162370 . + . ID=Physo131272.2;Parent=Physo131272;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_15 ensembl protein_coding_gene 164739 166152 . + . ID=Physo131274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150045;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 164739 166152 . + . ID=Physo131274;Parent=Physo131274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 164739 164775 . + 0 ID=Physo131274;Parent=Physo131274;rank=1 scaffold_15 . exon 164739 164775 . + . ID=Physo131274.1;Parent=Physo131274;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 164897 166152 . + 0 ID=Physo131274;Parent=Physo131274;rank=2 scaffold_15 . exon 164897 166152 . + . ID=Physo131274.2;Parent=Physo131274;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 168329 175327 . + . ID=Physo131275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150046;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 168329 175327 . + . ID=Physo131275;Parent=Physo131275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 168329 171727 . + 0 ID=Physo131275;Parent=Physo131275;rank=1 scaffold_15 . exon 168329 171727 . + . ID=Physo131275.1;Parent=Physo131275;constitutive=1;rank=1 scaffold_15 . CDS 171803 175327 . + 0 ID=Physo131275;Parent=Physo131275;rank=2 scaffold_15 ensembl protein_coding_gene 162804 163811 . - . ID=Physo156242;biotype=protein_coding;external_name=C_scaffold_15000012;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 162804 163811 . - . ID=Physo156242;Parent=Physo156242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 162804 163217 . - 0 ID=Physo156242;Parent=Physo156242;rank=2 scaffold_15 . exon 162804 163217 . - . ID=Physo156242.2;Parent=Physo156242;constitutive=1;rank=2 scaffold_15 . CDS 163281 163811 . - 0 ID=Physo156242;Parent=Physo156242;rank=1 scaffold_15 . exon 163281 163811 . - . ID=Physo156242.1;Parent=Physo156242;constitutive=1;rank=1 scaffold_15 . repeat_region 170568 170615 . ? . description=trf scaffold_15 . repeat_region 176861 176906 . ? . description=trf scaffold_15 . exon 171803 175327 . + . ID=Physo131275.2;Parent=Physo131275;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 177796 178427 . - . ID=Physo131276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150047;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 177796 178427 . - . ID=Physo131276;Parent=Physo131276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 177796 178047 . - 0 ID=Physo131276;Parent=Physo131276;rank=3 scaffold_15 . exon 177796 178047 . - . ID=Physo131276.3;Parent=Physo131276;constitutive=1;rank=3 scaffold_15 . CDS 178072 178081 . - 0 ID=Physo131276;Parent=Physo131276;rank=2 scaffold_15 . exon 178072 178081 . - . ID=Physo131276.2;Parent=Physo131276;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 178213 178427 . - 0 ID=Physo131276;Parent=Physo131276;rank=1 scaffold_15 . exon 178213 178427 . - . ID=Physo131276.1;Parent=Physo131276;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . repeat_region 179376 179385 . ? . description=dust scaffold_15 . biological_region 183618 183620 0.999 - . logic_name=eponine scaffold_15 . biological_region 183621 183622 0.999 + . logic_name=eponine scaffold_15 . biological_region 186365 186367 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 180876 184382 . + . ID=Physo131277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150048;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 180876 184382 . + . ID=Physo131277;Parent=Physo131277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 180876 182085 . + 0 ID=Physo131277;Parent=Physo131277;rank=1 scaffold_15 . exon 180876 182085 . + . ID=Physo131277.1;Parent=Physo131277;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 182182 182504 . + 0 ID=Physo131277;Parent=Physo131277;rank=2 scaffold_15 . exon 182182 182504 . + . ID=Physo131277.2;Parent=Physo131277;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 182554 182830 . + 0 ID=Physo131277;Parent=Physo131277;rank=3 scaffold_15 . exon 182554 182830 . + . ID=Physo131277.3;Parent=Physo131277;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 182864 183134 . + 0 ID=Physo131277;Parent=Physo131277;rank=4 scaffold_15 . exon 182864 183134 . + . ID=Physo131277.4;Parent=Physo131277;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 183330 183768 . + 0 ID=Physo131277;Parent=Physo131277;rank=5 scaffold_15 . exon 183330 183768 . + . ID=Physo131277.5;Parent=Physo131277;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 183852 184382 . + 0 ID=Physo131277;Parent=Physo131277;rank=6 scaffold_15 . exon 183852 184382 . + . ID=Physo131277.6;Parent=Physo131277;constitutive=1;rank=6 scaffold_15 ensembl protein_coding_gene 184659 188700 . - . ID=Physo131278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150049;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 184659 188700 . - . ID=Physo131278;Parent=Physo131278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 184659 186523 . - 0 ID=Physo131278;Parent=Physo131278;rank=2 scaffold_15 . exon 184659 186523 . - . ID=Physo131278.2;Parent=Physo131278;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 186576 188700 . - 0 ID=Physo131278;Parent=Physo131278;rank=1 scaffold_15 . exon 186576 188700 . - . ID=Physo131278.1;Parent=Physo131278;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 189337 192152 . + . ID=Physo131279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150050;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 189337 192152 . + . ID=Physo131279;Parent=Physo131279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 189337 189533 . + 0 ID=Physo131279;Parent=Physo131279;rank=1 scaffold_15 . exon 189337 189533 . + . ID=Physo131279.1;Parent=Physo131279;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 189574 189742 . + 0 ID=Physo131279;Parent=Physo131279;rank=2 scaffold_15 . exon 189574 189742 . + . ID=Physo131279.2;Parent=Physo131279;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 190520 190693 . + 0 ID=Physo131279;Parent=Physo131279;rank=3 scaffold_15 . exon 190520 190693 . + . ID=Physo131279.3;Parent=Physo131279;constitutive=1;rank=3 scaffold_15 . CDS 190732 190758 . + 0 ID=Physo131279;Parent=Physo131279;rank=4 scaffold_15 . exon 190732 190758 . + . ID=Physo131279.4;Parent=Physo131279;constitutive=1;rank=4 scaffold_15 . CDS 191066 191204 . + 0 ID=Physo131279;Parent=Physo131279;rank=5 scaffold_15 . exon 191066 191204 . + . ID=Physo131279.5;Parent=Physo131279;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_15 . CDS 191304 191432 . + 0 ID=Physo131279;Parent=Physo131279;rank=6 scaffold_15 . exon 191304 191432 . + . ID=Physo131279.6;Parent=Physo131279;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 191512 192152 . + 0 ID=Physo131279;Parent=Physo131279;rank=7 scaffold_15 . exon 191512 192152 . + . ID=Physo131279.7;Parent=Physo131279;constitutive=1;ensembl_phase=1;rank=7 scaffold_15 ensembl protein_coding_gene 192778 194884 . + . ID=Physo131280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150051;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 192778 194884 . + . ID=Physo131280;Parent=Physo131280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 192778 192987 . + 0 ID=Physo131280;Parent=Physo131280;rank=1 scaffold_15 . exon 192778 192987 . + . ID=Physo131280.1;Parent=Physo131280;constitutive=1;rank=1 scaffold_15 . CDS 193216 194649 . + 0 ID=Physo131280;Parent=Physo131280;rank=2 scaffold_15 . exon 193216 194649 . + . ID=Physo131280.2;Parent=Physo131280;constitutive=1;rank=2 scaffold_15 . CDS 194810 194884 . + 0 ID=Physo131280;Parent=Physo131280;rank=3 scaffold_15 . exon 194810 194884 . + . ID=Physo131280.3;Parent=Physo131280;constitutive=1;rank=3 scaffold_15 ensembl protein_coding_gene 197101 204164 . - . ID=Physo156244;biotype=protein_coding;external_name=C_scaffold_15000014;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 197101 204164 . - . ID=Physo156244;Parent=Physo156244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 197101 197220 . - 0 ID=Physo156244;Parent=Physo156244;rank=15 scaffold_15 . exon 197101 197220 . - . ID=Physo156244.15;Parent=Physo156244;constitutive=1;rank=15 scaffold_15 . CDS 197264 197716 . - 0 ID=Physo156244;Parent=Physo156244;rank=14 scaffold_15 . exon 197264 197716 . - . ID=Physo156244.14;Parent=Physo156244;constitutive=1;rank=14 scaffold_15 . CDS 197812 198259 . - 0 ID=Physo156244;Parent=Physo156244;rank=13 scaffold_15 . exon 197812 198259 . - . ID=Physo156244.13;Parent=Physo156244;constitutive=1;ensembl_phase=2;rank=13 scaffold_15 . CDS 198518 198579 . - 0 ID=Physo156244;Parent=Physo156244;rank=12 scaffold_15 . CDS 198710 199034 . - 0 ID=Physo156244;Parent=Physo156244;rank=11 scaffold_15 . CDS 199141 199655 . - 0 ID=Physo156244;Parent=Physo156244;rank=10 scaffold_15 . CDS 199698 199876 . - 0 ID=Physo156244;Parent=Physo156244;rank=9 scaffold_15 . CDS 199901 200335 . - 0 ID=Physo156244;Parent=Physo156244;rank=8 scaffold_15 . CDS 200396 201035 . - 0 ID=Physo156244;Parent=Physo156244;rank=7 scaffold_15 . CDS 201231 201690 . - 0 ID=Physo156244;Parent=Physo156244;rank=6 scaffold_15 . CDS 201823 201965 . - 0 ID=Physo156244;Parent=Physo156244;rank=5 scaffold_15 . CDS 202041 202366 . - 0 ID=Physo156244;Parent=Physo156244;rank=4 scaffold_15 . CDS 202532 202732 . - 0 ID=Physo156244;Parent=Physo156244;rank=3 scaffold_15 . CDS 202784 203922 . - 0 ID=Physo156244;Parent=Physo156244;rank=2 scaffold_15 . CDS 203944 204164 . - 0 ID=Physo156244;Parent=Physo156244;rank=1 scaffold_15 . biological_region 198930 198935 0.999 + . logic_name=eponine scaffold_15 . repeat_region 199026 199034 . ? . description=dust scaffold_15 . biological_region 199044 199045 0.999 - . logic_name=eponine scaffold_15 . repeat_region 199852 199907 . ? . description=trf scaffold_15 . repeat_region 204110 204163 . ? . description=dust scaffold_15 . biological_region 204269 204274 0.999 + . logic_name=eponine scaffold_15 . biological_region 204325 204329 0.999 - . logic_name=eponine scaffold_15 . biological_region 204584 204586 0.999 + . logic_name=eponine scaffold_15 . biological_region 204621 204621 0.999 + . logic_name=eponine scaffold_15 . biological_region 204650 204654 0.999 + . logic_name=eponine scaffold_15 . biological_region 204673 204677 0.999 + . logic_name=eponine scaffold_15 . biological_region 205375 205382 0.999 + . logic_name=eponine scaffold_15 . repeat_region 205813 205827 . ? . description=dust scaffold_15 . biological_region 207209 207213 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 204726 205595 . + . ID=Physo113670;biotype=protein_coding;external_name=estExt_Genewise1.C_150192;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 204726 205595 . + . ID=Physo113670;Parent=Physo113670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 204726 205595 . + . ID=Physo113670.1;Parent=Physo113670;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 204756 205469 . + 0 ID=Physo113670;Parent=Physo113670;rank=1 scaffold_15 ensembl protein_coding_gene 205935 207951 . + . ID=Physo131285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150056;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 205935 207951 . + . ID=Physo131285;Parent=Physo131285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 205935 206057 . + 0 ID=Physo131285;Parent=Physo131285;rank=1 scaffold_15 . exon 205935 206057 . + . ID=Physo131285.1;Parent=Physo131285;constitutive=1;rank=1 scaffold_15 . CDS 206131 207951 . + 0 ID=Physo131285;Parent=Physo131285;rank=2 scaffold_15 . exon 206131 207951 . + . ID=Physo131285.2;Parent=Physo131285;constitutive=1;rank=2 scaffold_15 . exon 198518 198579 . - . ID=Physo156244.12;Parent=Physo156244;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_15 . exon 198710 199034 . - . ID=Physo156244.11;Parent=Physo156244;constitutive=1;ensembl_phase=2;rank=11 scaffold_15 . exon 199141 199655 . - . ID=Physo156244.10;Parent=Physo156244;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_15 . exon 199698 199876 . - . ID=Physo156244.9;Parent=Physo156244;constitutive=1;ensembl_phase=1;rank=9 scaffold_15 . exon 199901 200335 . - . ID=Physo156244.8;Parent=Physo156244;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_15 . exon 200396 201035 . - . ID=Physo156244.7;Parent=Physo156244;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_15 . exon 201231 201690 . - . ID=Physo156244.6;Parent=Physo156244;constitutive=1;ensembl_phase=2;rank=6 scaffold_15 . exon 201823 201965 . - . ID=Physo156244.5;Parent=Physo156244;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_15 . exon 202041 202366 . - . ID=Physo156244.4;Parent=Physo156244;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . exon 202532 202732 . - . ID=Physo156244.3;Parent=Physo156244;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_15 . exon 202784 203922 . - . ID=Physo156244.2;Parent=Physo156244;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_15 . exon 203944 204164 . - . ID=Physo156244.1;Parent=Physo156244;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 209666 211262 . - . ID=Physo131286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150057;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 209666 211262 . - . ID=Physo131286;Parent=Physo131286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 209666 210613 . - 0 ID=Physo131286;Parent=Physo131286;rank=3 scaffold_15 . exon 209666 210613 . - . ID=Physo131286.3;Parent=Physo131286;constitutive=1;rank=3 scaffold_15 . CDS 210681 210999 . - 0 ID=Physo131286;Parent=Physo131286;rank=2 scaffold_15 . exon 210681 210999 . - . ID=Physo131286.2;Parent=Physo131286;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 211243 211262 . - 0 ID=Physo131286;Parent=Physo131286;rank=1 scaffold_15 . exon 211243 211262 . - . ID=Physo131286.1;Parent=Physo131286;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 211793 214131 . - . ID=Physo131287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150058;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 211793 214131 . - . ID=Physo131287;Parent=Physo131287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 211793 212135 . - 0 ID=Physo131287;Parent=Physo131287;rank=4 scaffold_15 . exon 211793 212135 . - . ID=Physo131287.4;Parent=Physo131287;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 212331 212437 . - 0 ID=Physo131287;Parent=Physo131287;rank=3 scaffold_15 . exon 212331 212437 . - . ID=Physo131287.3;Parent=Physo131287;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . CDS 212546 213556 . - 0 ID=Physo131287;Parent=Physo131287;rank=2 scaffold_15 . exon 212546 213556 . - . ID=Physo131287.2;Parent=Physo131287;constitutive=1;rank=2 scaffold_15 . CDS 213616 214131 . - 0 ID=Physo131287;Parent=Physo131287;rank=1 scaffold_15 . exon 213616 214131 . - . ID=Physo131287.1;Parent=Physo131287;constitutive=1;rank=1 scaffold_15 . repeat_region 220430 220479 . ? . description=dust scaffold_15 . biological_region 222443 222449 0.999 + . logic_name=eponine scaffold_15 . biological_region 222574 222579 0.999 + . logic_name=eponine scaffold_15 . repeat_region 222676 222725 . ? . description=dust scaffold_15 . repeat_region 225127 225159 . ? . description=trf scaffold_15 . biological_region 225263 225265 0.999 + . logic_name=eponine scaffold_15 . biological_region 227356 227362 0.999 + . logic_name=eponine scaffold_15 . biological_region 227487 227492 0.999 + . logic_name=eponine scaffold_15 . repeat_region 227820 227839 . ? . description=dust scaffold_15 . repeat_region 227820 227839 . ? . description=trf scaffold_15 ensembl protein_coding_gene 224157 225764 . + . ID=Physo131288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150059;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 224157 225764 . + . ID=Physo131288;Parent=Physo131288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 224157 224176 . + 0 ID=Physo131288;Parent=Physo131288;rank=1 scaffold_15 . exon 224157 224176 . + . ID=Physo131288.1;Parent=Physo131288;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 224431 224749 . + 0 ID=Physo131288;Parent=Physo131288;rank=2 scaffold_15 . exon 224431 224749 . + . ID=Physo131288.2;Parent=Physo131288;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 224817 225764 . + 0 ID=Physo131288;Parent=Physo131288;rank=3 scaffold_15 . exon 224817 225764 . + . ID=Physo131288.3;Parent=Physo131288;constitutive=1;rank=3 scaffold_15 . repeat_region 233968 234105 . - . description=Polinton-1_PI scaffold_15 . repeat_region 234128 234194 . - . description=Polinton-1_PI scaffold_15 . repeat_region 234248 234522 . + . description=Polinton-1_PI scaffold_15 . repeat_region 235749 237759 . + . description=Polinton-1_PI scaffold_15 . repeat_region 237761 245106 . + . description=Polinton-1_PI scaffold_15 ensembl protein_coding_gene 228728 229544 . + . ID=Physo131289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150060;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 228728 229544 . + . ID=Physo131289;Parent=Physo131289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 228728 229544 . + . ID=Physo131289.1;Parent=Physo131289;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 228777 229187 . + 0 ID=Physo131289;Parent=Physo131289;rank=1 scaffold_15 ensembl pseudogene 234342 235569 . + . ID=Physo131290;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_150061;logic_name=jgi_physo1_1 scaffold_15 ensembl pseudogene 234342 235569 . + . ID=Physo131290;Parent=Physo131290;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_15 . exon 234342 234404 . + . ID=Physo131290.1;Parent=Physo131290;constitutive=1;rank=1 scaffold_15 . exon 234483 234540 . + . ID=Physo131290.2;Parent=Physo131290;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . exon 234682 235569 . + . ID=Physo131290.3;Parent=Physo131290;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_15 ensembl protein_coding_gene 236454 237806 . + . ID=Physo131291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150062;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 236454 237806 . + . ID=Physo131291;Parent=Physo131291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 236454 237806 . + 0 ID=Physo131291;Parent=Physo131291;rank=1 scaffold_15 . exon 236454 237806 . + . ID=Physo131291.1;Parent=Physo131291;constitutive=1;rank=1 scaffold_15 . repeat_region 242211 242247 . ? . description=dust scaffold_15 . repeat_region 247233 247426 . ? . description=trf scaffold_15 . repeat_region 247704 252762 . + . description=Polinton-1_PI scaffold_15 . repeat_region 253244 253385 . + . description=Polinton-1_PI scaffold_15 . biological_region 253852 253859 0.999 + . logic_name=eponine scaffold_15 . biological_region 253881 253883 0.999 - . logic_name=eponine scaffold_15 . biological_region 253936 253939 0.999 + . logic_name=eponine scaffold_15 . biological_region 254057 254063 0.999 - . logic_name=eponine scaffold_15 . biological_region 254112 254117 0.999 + . logic_name=eponine scaffold_15 . biological_region 254430 254432 0.999 - . logic_name=eponine scaffold_15 . biological_region 254998 254999 0.999 - . logic_name=eponine scaffold_15 . biological_region 255052 255053 0.999 - . logic_name=eponine scaffold_15 . biological_region 255200 255202 0.999 - . logic_name=eponine scaffold_15 . biological_region 255685 255691 0.999 - . logic_name=eponine scaffold_15 . biological_region 255689 255696 0.999 + . logic_name=eponine scaffold_15 . biological_region 256209 256211 0.999 + . logic_name=eponine scaffold_15 . biological_region 256760 256764 0.999 + . logic_name=eponine scaffold_15 . biological_region 256870 256872 0.999 - . logic_name=eponine scaffold_15 . biological_region 257353 257359 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 253825 255397 . + . ID=Physo131292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150063;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 253825 255397 . + . ID=Physo131292;Parent=Physo131292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 253825 254249 . + 0 ID=Physo131292;Parent=Physo131292;rank=1 scaffold_15 . exon 253825 254249 . + . ID=Physo131292.1;Parent=Physo131292;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 254335 254437 . + 0 ID=Physo131292;Parent=Physo131292;rank=2 scaffold_15 . exon 254335 254437 . + . ID=Physo131292.2;Parent=Physo131292;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 254507 255397 . + 0 ID=Physo131292;Parent=Physo131292;rank=3 scaffold_15 . exon 254507 255397 . + . ID=Physo131292.3;Parent=Physo131292;constitutive=1;rank=3 scaffold_15 ensembl protein_coding_gene 256153 256969 . - . ID=Physo131293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150064;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 256153 256969 . - . ID=Physo131293;Parent=Physo131293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 256153 256969 . - . ID=Physo131293.1;Parent=Physo131293;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 256510 256920 . - 0 ID=Physo131293;Parent=Physo131293;rank=1 scaffold_15 . repeat_region 257860 257879 . ? . description=dust scaffold_15 . repeat_region 257860 257879 . ? . description=trf scaffold_15 . repeat_region 265090 265117 . ? . description=dust scaffold_15 . repeat_region 265091 265117 . ? . description=trf scaffold_15 . repeat_region 266077 266137 . ? . description=trf scaffold_15 . repeat_region 267033 267112 . ? . description=dust scaffold_15 ensembl protein_coding_gene 260991 261899 . + . ID=Physo131294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150065;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 260991 261899 . + . ID=Physo131294;Parent=Physo131294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 260991 261899 . + 0 ID=Physo131294;Parent=Physo131294;rank=1 scaffold_15 . exon 260991 261899 . + . ID=Physo131294.1;Parent=Physo131294;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 262488 265125 . - . ID=Physo156248;biotype=protein_coding;external_name=C_scaffold_15000018;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 262488 265125 . - . ID=Physo156248;Parent=Physo156248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 262488 262516 . - 0 ID=Physo156248;Parent=Physo156248;rank=7 scaffold_15 . exon 262488 262516 . - . ID=Physo156248.7;Parent=Physo156248;constitutive=1;ensembl_phase=1;rank=7 scaffold_15 . CDS 262536 262880 . - 0 ID=Physo156248;Parent=Physo156248;rank=6 scaffold_15 . exon 262536 262880 . - . ID=Physo156248.6;Parent=Physo156248;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 263060 263076 . - 0 ID=Physo156248;Parent=Physo156248;rank=5 scaffold_15 . exon 263060 263076 . - . ID=Physo156248.5;Parent=Physo156248;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 263195 263882 . - 0 ID=Physo156248;Parent=Physo156248;rank=4 scaffold_15 . exon 263195 263882 . - . ID=Physo156248.4;Parent=Physo156248;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 263925 264306 . - 0 ID=Physo156248;Parent=Physo156248;rank=3 scaffold_15 . exon 263925 264306 . - . ID=Physo156248.3;Parent=Physo156248;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 264343 264690 . - 0 ID=Physo156248;Parent=Physo156248;rank=2 scaffold_15 . exon 264343 264690 . - . ID=Physo156248.2;Parent=Physo156248;constitutive=1;rank=2 scaffold_15 . CDS 264760 265125 . - 0 ID=Physo156248;Parent=Physo156248;rank=1 scaffold_15 . exon 264760 265125 . - . ID=Physo156248.1;Parent=Physo156248;constitutive=1;rank=1 scaffold_15 . repeat_region 268199 268494 . - . description=GypsyPi-1c_LTR scaffold_15 . repeat_region 274355 274650 . - . description=GypsyPi-1c_LTR scaffold_15 . repeat_region 277888 277957 . ? . description=trf scaffold_15 . repeat_region 277888 277967 . ? . description=trf scaffold_15 . repeat_region 278537 278649 . ? . description=trf scaffold_15 . repeat_region 278729 278822 . ? . description=trf scaffold_15 . repeat_region 279681 279741 . ? . description=trf scaffold_15 . repeat_region 281694 281730 . ? . description=trf scaffold_15 . biological_region 282611 282611 0.999 - . logic_name=eponine scaffold_15 . biological_region 283179 283180 0.999 + . logic_name=eponine scaffold_15 . biological_region 283220 283227 0.999 + . logic_name=eponine scaffold_15 . repeat_region 283980 284005 . ? . description=trf scaffold_15 . biological_region 285452 285458 0.999 + . logic_name=eponine scaffold_15 . biological_region 286133 286135 0.999 + . logic_name=eponine scaffold_15 . biological_region 286175 286180 0.999 + . logic_name=eponine scaffold_15 . biological_region 286227 286232 0.999 - . logic_name=eponine scaffold_15 . biological_region 286282 286290 0.999 + . logic_name=eponine scaffold_15 . biological_region 286376 286377 0.999 - . logic_name=eponine scaffold_15 . biological_region 286400 286400 0.999 - . logic_name=eponine scaffold_15 . biological_region 286421 286422 0.999 - . logic_name=eponine scaffold_15 . biological_region 287074 287075 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 284789 289090 . - . ID=Physo108536;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150005;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 284789 289090 . - . ID=Physo108536;Parent=Physo108536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 284789 284853 . - 0 ID=Physo108536;Parent=Physo108536;rank=4 scaffold_15 . exon 284789 284853 . - . ID=Physo108536.4;Parent=Physo108536;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 287611 288289 . - 0 ID=Physo108536;Parent=Physo108536;rank=3 scaffold_15 . CDS 288353 288844 . - 0 ID=Physo108536;Parent=Physo108536;rank=2 scaffold_15 . CDS 288905 289090 . - 0 ID=Physo108536;Parent=Physo108536;rank=1 scaffold_15 ensembl protein_coding_gene 281771 284187 . - . ID=Physo131296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150067;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 281771 284187 . - . ID=Physo131296;Parent=Physo131296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 281771 283333 . - 0 ID=Physo131296;Parent=Physo131296;rank=3 scaffold_15 . exon 281771 283333 . - . ID=Physo131296.3;Parent=Physo131296;constitutive=1;rank=3 scaffold_15 . CDS 283400 283510 . - 0 ID=Physo131296;Parent=Physo131296;rank=2 scaffold_15 . exon 283400 283510 . - . ID=Physo131296.2;Parent=Physo131296;constitutive=1;rank=2 scaffold_15 . CDS 283587 284135 . - 0 ID=Physo131296;Parent=Physo131296;rank=1 scaffold_15 . exon 283587 284187 . - . ID=Physo131296.1;Parent=Physo131296;constitutive=1;ensembl_phase=-1;rank=1 scaffold_15 . repeat_region 296392 296695 . + . description=GypsyPi-1c_LTR scaffold_15 . repeat_region 296696 297200 . + . description=GypsyPi-1c_I-int scaffold_15 . repeat_region 297203 301857 . + . description=GypsyPi-1c_I-int scaffold_15 . exon 287611 288289 . - . ID=Physo108536.3;Parent=Physo108536;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . exon 288353 288844 . - . ID=Physo108536.2;Parent=Physo108536;constitutive=1;rank=2 scaffold_15 . exon 288905 289090 . - . ID=Physo108536.1;Parent=Physo108536;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 290955 292610 . + . ID=Physo131298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150069;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 290955 292610 . + . ID=Physo131298;Parent=Physo131298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 290955 292610 . + 0 ID=Physo131298;Parent=Physo131298;rank=1 scaffold_15 . exon 290955 292610 . + . ID=Physo131298.1;Parent=Physo131298;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 296783 301661 . + . ID=Physo131299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150070;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 296783 301661 . + . ID=Physo131299;Parent=Physo131299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 296783 296834 . + 0 ID=Physo131299;Parent=Physo131299;rank=1 scaffold_15 . exon 296783 296834 . + . ID=Physo131299.1;Parent=Physo131299;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 296879 297782 . + 0 ID=Physo131299;Parent=Physo131299;rank=2 scaffold_15 . exon 296879 297782 . + . ID=Physo131299.2;Parent=Physo131299;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 297828 298826 . + 0 ID=Physo131299;Parent=Physo131299;rank=3 scaffold_15 . CDS 298870 301606 . + 0 ID=Physo131299;Parent=Physo131299;rank=4 scaffold_15 . CDS 301653 301661 . + 0 ID=Physo131299;Parent=Physo131299;rank=5 scaffold_15 . repeat_region 298522 298687 . ? . description=trf scaffold_15 . repeat_region 298666 298736 . ? . description=trf scaffold_15 . biological_region 299669 299669 0.999 - . logic_name=eponine scaffold_15 . biological_region 301367 301371 0.999 - . logic_name=eponine scaffold_15 . repeat_region 301858 301907 . ? . description=dust scaffold_15 . biological_region 302340 302340 0.999 - . logic_name=eponine scaffold_15 . biological_region 302699 302704 0.999 - . logic_name=eponine scaffold_15 . repeat_region 302929 302978 . ? . description=dust scaffold_15 . biological_region 303426 303430 0.999 + . logic_name=eponine scaffold_15 . biological_region 303475 303480 0.999 + . logic_name=eponine scaffold_15 . biological_region 304900 304900 0.999 - . logic_name=eponine scaffold_15 . biological_region 305259 305264 0.999 - . logic_name=eponine scaffold_15 . biological_region 305458 305459 0.999 - . logic_name=eponine scaffold_15 . exon 297828 298826 . + . ID=Physo131299.3;Parent=Physo131299;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_15 . exon 298870 301606 . + . ID=Physo131299.4;Parent=Physo131299;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . exon 301653 301661 . + . ID=Physo131299.5;Parent=Physo131299;constitutive=1;rank=5 scaffold_15 ensembl protein_coding_gene 301799 305813 . - . ID=Physo131300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150071;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 301799 305813 . - . ID=Physo131300;Parent=Physo131300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 301799 301805 . - 0 ID=Physo131300;Parent=Physo131300;rank=5 scaffold_15 . exon 301799 301805 . - . ID=Physo131300.5;Parent=Physo131300;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 301942 302908 . - 0 ID=Physo131300;Parent=Physo131300;rank=4 scaffold_15 . exon 301942 302908 . - . ID=Physo131300.4;Parent=Physo131300;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 303330 303896 . - 0 ID=Physo131300;Parent=Physo131300;rank=3 scaffold_15 . exon 303330 303896 . - . ID=Physo131300.3;Parent=Physo131300;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 304143 305692 . - 0 ID=Physo131300;Parent=Physo131300;rank=2 scaffold_15 . exon 304143 305692 . - . ID=Physo131300.2;Parent=Physo131300;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 305785 305813 . - 0 ID=Physo131300;Parent=Physo131300;rank=1 scaffold_15 . exon 305785 305813 . - . ID=Physo131300.1;Parent=Physo131300;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 307202 313414 . + . ID=Physo131301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150072;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 307202 313414 . + . ID=Physo131301;Parent=Physo131301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 307202 313414 . + 0 ID=Physo131301;Parent=Physo131301;rank=1 scaffold_15 . exon 307202 313414 . + . ID=Physo131301.1;Parent=Physo131301;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 313591 316008 . - . ID=Physo131302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150073;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 313591 316008 . - . ID=Physo131302;Parent=Physo131302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 313591 316008 . - 0 ID=Physo131302;Parent=Physo131302;rank=1 scaffold_15 . exon 313591 316008 . - . ID=Physo131302.1;Parent=Physo131302;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 316584 316952 . - . ID=Physo131303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150074;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 316584 316952 . - . ID=Physo131303;Parent=Physo131303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 316584 316952 . - 0 ID=Physo131303;Parent=Physo131303;rank=1 scaffold_15 . exon 316584 316952 . - . ID=Physo131303.1;Parent=Physo131303;constitutive=1;rank=1 scaffold_15 . biological_region 317441 317442 0.999 - . logic_name=eponine scaffold_15 . biological_region 317522 317524 0.999 + . logic_name=eponine scaffold_15 . repeat_region 318818 318830 . ? . description=dust scaffold_15 . repeat_region 319199 319244 . ? . description=trf scaffold_15 . biological_region 319458 319459 0.999 + . logic_name=eponine scaffold_15 . biological_region 322173 322177 0.999 - . logic_name=eponine scaffold_15 . biological_region 323504 323505 0.999 - . logic_name=eponine scaffold_15 . biological_region 324160 324163 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 319434 341601 . + . ID=Physo131304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150075;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 319434 341601 . + . ID=Physo131304;Parent=Physo131304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 319434 321492 . + 0 ID=Physo131304;Parent=Physo131304;rank=1 scaffold_15 . exon 319434 321492 . + . ID=Physo131304.1;Parent=Physo131304;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 321853 322006 . + 0 ID=Physo131304;Parent=Physo131304;rank=2 scaffold_15 . exon 321853 322006 . + . ID=Physo131304.2;Parent=Physo131304;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 322076 322475 . + 0 ID=Physo131304;Parent=Physo131304;rank=3 scaffold_15 . exon 322076 322475 . + . ID=Physo131304.3;Parent=Physo131304;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 322546 341601 . + 0 ID=Physo131304;Parent=Physo131304;rank=4 scaffold_15 . exon 322546 341601 . + . ID=Physo131304.4;Parent=Physo131304;constitutive=1;rank=4 scaffold_15 . repeat_region 341676 341684 . ? . description=dust scaffold_15 . repeat_region 342366 342379 . ? . description=dust scaffold_15 . biological_region 342828 342829 0.999 + . logic_name=eponine scaffold_15 . repeat_region 343678 343715 . ? . description=trf scaffold_15 . repeat_region 343981 343988 . ? . description=dust scaffold_15 ensembl protein_coding_gene 342880 343690 . - . ID=Physo108537;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150006;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 342880 343690 . - . ID=Physo108537;Parent=Physo108537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 342880 343452 . - 0 ID=Physo108537;Parent=Physo108537;rank=2 scaffold_15 . exon 342880 343452 . - . ID=Physo108537.2;Parent=Physo108537;constitutive=1;rank=2 scaffold_15 . CDS 343556 343690 . - 0 ID=Physo108537;Parent=Physo108537;rank=1 scaffold_15 . exon 343556 343690 . - . ID=Physo108537.1;Parent=Physo108537;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 319434 341601 . + . ID=Physo131304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150075;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 319434 341601 . + . ID=Physo131304;Parent=Physo131304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 319434 321492 . + 0 ID=Physo131304;Parent=Physo131304;rank=1 scaffold_15 . CDS 321853 322006 . + 0 ID=Physo131304;Parent=Physo131304;rank=2 scaffold_15 . CDS 322076 322475 . + 0 ID=Physo131304;Parent=Physo131304;rank=3 scaffold_15 . CDS 322546 341601 . + 0 ID=Physo131304;Parent=Physo131304;rank=4 scaffold_15 . exon 322546 341601 . + . ID=Physo131304.4;Parent=Physo131304;constitutive=1;rank=4 scaffold_15 ensembl protein_coding_gene 344063 348418 . - . ID=Physo156253;biotype=protein_coding;external_name=C_scaffold_15000023;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 344063 348418 . - . ID=Physo156253;Parent=Physo156253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 344063 344416 . - 0 ID=Physo156253;Parent=Physo156253;rank=8 scaffold_15 . exon 344063 344416 . - . ID=Physo156253.8;Parent=Physo156253;constitutive=1;rank=8 scaffold_15 . CDS 344489 344834 . - 0 ID=Physo156253;Parent=Physo156253;rank=7 scaffold_15 . exon 344489 344834 . - . ID=Physo156253.7;Parent=Physo156253;constitutive=1;ensembl_phase=2;rank=7 scaffold_15 . CDS 344862 345252 . - 0 ID=Physo156253;Parent=Physo156253;rank=6 scaffold_15 . exon 344862 345252 . - . ID=Physo156253.6;Parent=Physo156253;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_15 . CDS 345370 346025 . - 0 ID=Physo156253;Parent=Physo156253;rank=5 scaffold_15 . exon 345370 346025 . - . ID=Physo156253.5;Parent=Physo156253;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 346146 346680 . - 0 ID=Physo156253;Parent=Physo156253;rank=4 scaffold_15 . exon 346146 346680 . - . ID=Physo156253.4;Parent=Physo156253;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 346777 346957 . - 0 ID=Physo156253;Parent=Physo156253;rank=3 scaffold_15 . CDS 347281 347374 . - 0 ID=Physo156253;Parent=Physo156253;rank=2 scaffold_15 . CDS 347625 348418 . - 0 ID=Physo156253;Parent=Physo156253;rank=1 scaffold_15 ensembl protein_coding_gene 350244 352544 . + . ID=Physo131307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150078;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 350244 352544 . + . ID=Physo131307;Parent=Physo131307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 350244 350699 . + 0 ID=Physo131307;Parent=Physo131307;rank=1 scaffold_15 . exon 350244 350699 . + . ID=Physo131307.1;Parent=Physo131307;constitutive=1;rank=1 scaffold_15 . CDS 350723 351412 . + 0 ID=Physo131307;Parent=Physo131307;rank=2 scaffold_15 . exon 350723 351412 . + . ID=Physo131307.2;Parent=Physo131307;constitutive=1;rank=2 scaffold_15 . CDS 351517 351618 . + 0 ID=Physo131307;Parent=Physo131307;rank=3 scaffold_15 . exon 351517 351618 . + . ID=Physo131307.3;Parent=Physo131307;constitutive=1;rank=3 scaffold_15 . CDS 351699 352544 . + 0 ID=Physo131307;Parent=Physo131307;rank=4 scaffold_15 . exon 351699 352544 . + . ID=Physo131307.4;Parent=Physo131307;constitutive=1;rank=4 scaffold_15 ensembl protein_coding_gene 353142 353950 . + . ID=Physo131308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150079;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 353142 353950 . + . ID=Physo131308;Parent=Physo131308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 353142 353273 . + 0 ID=Physo131308;Parent=Physo131308;rank=1 scaffold_15 . exon 353142 353273 . + . ID=Physo131308.1;Parent=Physo131308;constitutive=1;rank=1 scaffold_15 . CDS 353354 353950 . + 0 ID=Physo131308;Parent=Physo131308;rank=2 scaffold_15 . exon 353354 353950 . + . ID=Physo131308.2;Parent=Physo131308;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 354129 354878 . + . ID=Physo131309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150080;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 354129 354878 . + . ID=Physo131309;Parent=Physo131309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 354129 354706 . + 0 ID=Physo131309;Parent=Physo131309;rank=1 scaffold_15 . exon 354129 354706 . + . ID=Physo131309.1;Parent=Physo131309;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 354776 354878 . + 0 ID=Physo131309;Parent=Physo131309;rank=2 scaffold_15 . exon 354776 354878 . + . ID=Physo131309.2;Parent=Physo131309;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . exon 346777 346957 . - . ID=Physo156253.3;Parent=Physo156253;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . exon 347281 347374 . - . ID=Physo156253.2;Parent=Physo156253;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . exon 347625 348418 . - . ID=Physo156253.1;Parent=Physo156253;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 355820 358090 . + . ID=Physo156254;biotype=protein_coding;external_name=C_scaffold_15000024;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 355820 358090 . + . ID=Physo156254;Parent=Physo156254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 355820 355844 . + 0 ID=Physo156254;Parent=Physo156254;rank=1 scaffold_15 . exon 355820 355844 . + . ID=Physo156254.1;Parent=Physo156254;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 355912 356069 . + 0 ID=Physo156254;Parent=Physo156254;rank=2 scaffold_15 . exon 355912 356069 . + . ID=Physo156254.2;Parent=Physo156254;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 356259 356337 . + 0 ID=Physo156254;Parent=Physo156254;rank=3 scaffold_15 . exon 356259 356337 . + . ID=Physo156254.3;Parent=Physo156254;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 356440 356783 . + 0 ID=Physo156254;Parent=Physo156254;rank=4 scaffold_15 . exon 356440 356783 . + . ID=Physo156254.4;Parent=Physo156254;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 357002 357400 . + 0 ID=Physo156254;Parent=Physo156254;rank=5 scaffold_15 . CDS 357443 358090 . + 0 ID=Physo156254;Parent=Physo156254;rank=6 scaffold_15 . biological_region 356825 356827 0.999 - . logic_name=eponine scaffold_15 . repeat_region 357542 357570 . ? . description=dust scaffold_15 . repeat_region 357542 357570 . ? . description=trf scaffold_15 . biological_region 357629 357631 0.999 - . logic_name=eponine scaffold_15 . biological_region 357701 357703 0.999 - . logic_name=eponine scaffold_15 . biological_region 358098 358100 0.999 - . logic_name=eponine scaffold_15 . biological_region 358562 358566 0.999 + . logic_name=eponine scaffold_15 . biological_region 358595 358595 0.999 + . logic_name=eponine scaffold_15 . biological_region 358631 358634 0.999 + . logic_name=eponine scaffold_15 . biological_region 359281 359283 0.999 + . logic_name=eponine scaffold_15 . repeat_region 363652 363693 . ? . description=trf scaffold_15 . biological_region 365587 365591 0.999 - . logic_name=eponine scaffold_15 . biological_region 365865 365869 0.999 + . logic_name=eponine scaffold_15 . biological_region 365987 365990 0.999 + . logic_name=eponine scaffold_15 . biological_region 366028 366028 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 358517 363355 . + . ID=Physo131311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150082;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 358517 363355 . + . ID=Physo131311;Parent=Physo131311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 358517 363355 . + 0 ID=Physo131311;Parent=Physo131311;rank=1 scaffold_15 . exon 358517 363355 . + . ID=Physo131311.1;Parent=Physo131311;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 363764 364945 . - . ID=Physo131312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150083;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 363764 364945 . - . ID=Physo131312;Parent=Physo131312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 363764 364945 . - . ID=Physo131312.1;Parent=Physo131312;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 363912 364940 . - 0 ID=Physo131312;Parent=Physo131312;rank=1 scaffold_15 . exon 357002 357400 . + . ID=Physo156254.5;Parent=Physo156254;constitutive=1;rank=5 scaffold_15 . exon 357443 358090 . + . ID=Physo156254.6;Parent=Physo156254;constitutive=1;rank=6 scaffold_15 ensembl protein_coding_gene 367456 368646 . + . ID=Physo131313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150084;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 367456 368646 . + . ID=Physo131313;Parent=Physo131313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 367456 368646 . + 0 ID=Physo131313;Parent=Physo131313;rank=1 scaffold_15 . exon 367456 368646 . + . ID=Physo131313.1;Parent=Physo131313;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 369621 378360 . - . ID=Physo156256;biotype=protein_coding;external_name=C_scaffold_15000026;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 369621 378360 . - . ID=Physo156256;Parent=Physo156256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 369621 369887 . - 0 ID=Physo156256;Parent=Physo156256;rank=16 scaffold_15 . exon 369621 369887 . - . ID=Physo156256.16;Parent=Physo156256;constitutive=1;rank=16 scaffold_15 . CDS 369971 371543 . - 0 ID=Physo156256;Parent=Physo156256;rank=15 scaffold_15 . exon 369971 371543 . - . ID=Physo156256.15;Parent=Physo156256;constitutive=1;ensembl_phase=2;rank=15 scaffold_15 . CDS 371854 372759 . - 0 ID=Physo156256;Parent=Physo156256;rank=14 scaffold_15 . exon 371854 372759 . - . ID=Physo156256.14;Parent=Physo156256;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=14 scaffold_15 . CDS 372838 372924 . - 0 ID=Physo156256;Parent=Physo156256;rank=13 scaffold_15 . exon 372838 372924 . - . ID=Physo156256.13;Parent=Physo156256;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_15 . CDS 373004 373797 . - 0 ID=Physo156256;Parent=Physo156256;rank=12 scaffold_15 . exon 373004 373797 . - . ID=Physo156256.12;Parent=Physo156256;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_15 . CDS 373867 373975 . - 0 ID=Physo156256;Parent=Physo156256;rank=11 scaffold_15 . exon 373867 373975 . - . ID=Physo156256.11;Parent=Physo156256;constitutive=1;ensembl_phase=2;rank=11 scaffold_15 . CDS 374021 374387 . - 0 ID=Physo156256;Parent=Physo156256;rank=10 scaffold_15 . exon 374021 374387 . - . ID=Physo156256.10;Parent=Physo156256;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_15 . CDS 374583 374879 . - 0 ID=Physo156256;Parent=Physo156256;rank=9 scaffold_15 . exon 374583 374879 . - . ID=Physo156256.9;Parent=Physo156256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_15 . CDS 374913 375252 . - 0 ID=Physo156256;Parent=Physo156256;rank=8 scaffold_15 . exon 374913 375252 . - . ID=Physo156256.8;Parent=Physo156256;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_15 . CDS 375421 375587 . - 0 ID=Physo156256;Parent=Physo156256;rank=7 scaffold_15 . exon 375421 375587 . - . ID=Physo156256.7;Parent=Physo156256;constitutive=1;ensembl_phase=1;rank=7 scaffold_15 . CDS 375762 376172 . - 0 ID=Physo156256;Parent=Physo156256;rank=6 scaffold_15 . exon 375762 376172 . - . ID=Physo156256.6;Parent=Physo156256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 376257 376439 . - 0 ID=Physo156256;Parent=Physo156256;rank=5 scaffold_15 . exon 376257 376439 . - . ID=Physo156256.5;Parent=Physo156256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_15 . CDS 376596 376770 . - 0 ID=Physo156256;Parent=Physo156256;rank=4 scaffold_15 . CDS 376873 377207 . - 0 ID=Physo156256;Parent=Physo156256;rank=3 scaffold_15 . CDS 377229 377756 . - 0 ID=Physo156256;Parent=Physo156256;rank=2 scaffold_15 . CDS 377853 378360 . - 0 ID=Physo156256;Parent=Physo156256;rank=1 scaffold_15 . biological_region 379162 379163 0.999 + . logic_name=eponine scaffold_15 . biological_region 383910 383913 0.999 + . logic_name=eponine scaffold_15 . exon 376596 376770 . - . ID=Physo156256.4;Parent=Physo156256;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_15 . exon 376873 377207 . - . ID=Physo156256.3;Parent=Physo156256;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . exon 377229 377756 . - . ID=Physo156256.2;Parent=Physo156256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . exon 377853 378360 . - . ID=Physo156256.1;Parent=Physo156256;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 385814 388788 . - . ID=Physo156257;biotype=protein_coding;external_name=C_scaffold_15000027;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 385814 388788 . - . ID=Physo156257;Parent=Physo156257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 385814 385819 . - 0 ID=Physo156257;Parent=Physo156257;rank=9 scaffold_15 . exon 385814 385819 . - . ID=Physo156257.9;Parent=Physo156257;constitutive=1;rank=9 scaffold_15 . CDS 385879 385979 . - 0 ID=Physo156257;Parent=Physo156257;rank=8 scaffold_15 . exon 385879 385979 . - . ID=Physo156257.8;Parent=Physo156257;constitutive=1;ensembl_phase=1;rank=8 scaffold_15 . CDS 386043 386168 . - 0 ID=Physo156257;Parent=Physo156257;rank=7 scaffold_15 . exon 386043 386168 . - . ID=Physo156257.7;Parent=Physo156257;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_15 . CDS 386307 386381 . - 0 ID=Physo156257;Parent=Physo156257;rank=6 scaffold_15 . exon 386307 386381 . - . ID=Physo156257.6;Parent=Physo156257;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 386658 386912 . - 0 ID=Physo156257;Parent=Physo156257;rank=5 scaffold_15 . CDS 386982 387947 . - 0 ID=Physo156257;Parent=Physo156257;rank=4 scaffold_15 . CDS 387978 388131 . - 0 ID=Physo156257;Parent=Physo156257;rank=3 scaffold_15 . CDS 388171 388485 . - 0 ID=Physo156257;Parent=Physo156257;rank=2 scaffold_15 . CDS 388537 388788 . - 0 ID=Physo156257;Parent=Physo156257;rank=1 scaffold_15 . repeat_region 390282 390289 . ? . description=dust scaffold_15 . repeat_region 390327 390358 . ? . description=trf scaffold_15 ensembl protein_coding_gene 389126 389961 . + . ID=Physo131316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150087;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 389126 389961 . + . ID=Physo131316;Parent=Physo131316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 389126 389866 . + 0 ID=Physo131316;Parent=Physo131316;rank=1 scaffold_15 . exon 389126 389961 . + . ID=Physo131316.1;Parent=Physo131316;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . exon 386658 386912 . - . ID=Physo156257.5;Parent=Physo156257;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_15 . exon 386982 387947 . - . ID=Physo156257.4;Parent=Physo156257;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_15 . exon 387978 388131 . - . ID=Physo156257.3;Parent=Physo156257;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . exon 388171 388485 . - . ID=Physo156257.2;Parent=Physo156257;constitutive=1;rank=2 scaffold_15 . exon 388537 388788 . - . ID=Physo156257.1;Parent=Physo156257;constitutive=1;rank=1 scaffold_15 . biological_region 398380 398382 0.999 + . logic_name=eponine scaffold_15 . biological_region 398391 398393 0.999 - . logic_name=eponine scaffold_15 . biological_region 398509 398511 0.999 + . logic_name=eponine scaffold_15 . biological_region 402928 402933 0.999 + . logic_name=eponine scaffold_15 . biological_region 403346 403351 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 398102 399447 . + . ID=Physo108538;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150007;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 398102 399447 . + . ID=Physo108538;Parent=Physo108538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 398102 399364 . + 0 ID=Physo108538;Parent=Physo108538;rank=1 scaffold_15 . exon 398102 399447 . + . ID=Physo108538.1;Parent=Physo108538;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 ensembl protein_coding_gene 399722 400839 . - . ID=Physo131318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150089;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 399722 400839 . - . ID=Physo131318;Parent=Physo131318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 399722 399944 . - 0 ID=Physo131318;Parent=Physo131318;rank=5 scaffold_15 . exon 399722 399944 . - . ID=Physo131318.5;Parent=Physo131318;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 400004 400107 . - 0 ID=Physo131318;Parent=Physo131318;rank=4 scaffold_15 . exon 400004 400107 . - . ID=Physo131318.4;Parent=Physo131318;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_15 . CDS 400182 400412 . - 0 ID=Physo131318;Parent=Physo131318;rank=3 scaffold_15 . exon 400182 400412 . - . ID=Physo131318.3;Parent=Physo131318;constitutive=1;rank=3 scaffold_15 . CDS 400507 400658 . - 0 ID=Physo131318;Parent=Physo131318;rank=2 scaffold_15 . exon 400507 400658 . - . ID=Physo131318.2;Parent=Physo131318;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 400701 400839 . - 0 ID=Physo131318;Parent=Physo131318;rank=1 scaffold_15 . exon 400701 400839 . - . ID=Physo131318.1;Parent=Physo131318;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 401915 403900 . - . ID=Physo131319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150090;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 401915 403900 . - . ID=Physo131319;Parent=Physo131319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 401915 401927 . - 0 ID=Physo131319;Parent=Physo131319;rank=7 scaffold_15 . exon 401915 401927 . - . ID=Physo131319.7;Parent=Physo131319;constitutive=1;ensembl_phase=2;rank=7 scaffold_15 . CDS 402013 402115 . - 0 ID=Physo131319;Parent=Physo131319;rank=6 scaffold_15 . exon 402013 402115 . - . ID=Physo131319.6;Parent=Physo131319;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_15 . CDS 402175 402345 . - 0 ID=Physo131319;Parent=Physo131319;rank=5 scaffold_15 . exon 402175 402345 . - . ID=Physo131319.5;Parent=Physo131319;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_15 . CDS 402422 402578 . - 0 ID=Physo131319;Parent=Physo131319;rank=4 scaffold_15 . exon 402422 402578 . - . ID=Physo131319.4;Parent=Physo131319;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_15 . CDS 402655 403422 . - 0 ID=Physo131319;Parent=Physo131319;rank=3 scaffold_15 . exon 402655 403422 . - . ID=Physo131319.3;Parent=Physo131319;constitutive=1;rank=3 scaffold_15 . CDS 403575 403600 . - 0 ID=Physo131319;Parent=Physo131319;rank=2 scaffold_15 . exon 403575 403600 . - . ID=Physo131319.2;Parent=Physo131319;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 403894 403900 . - 0 ID=Physo131319;Parent=Physo131319;rank=1 scaffold_15 . exon 403894 403900 . - . ID=Physo131319.1;Parent=Physo131319;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . repeat_region 406246 406253 . ? . description=dust scaffold_15 . repeat_region 407712 407729 . ? . description=dust scaffold_15 . repeat_region 411399 411464 . ? . description=trf scaffold_15 . repeat_region 412871 412878 . ? . description=dust scaffold_15 ensembl protein_coding_gene 409253 412314 . - . ID=Physo131320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150091;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 409253 412314 . - . ID=Physo131320;Parent=Physo131320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 409253 410156 . - 0 ID=Physo131320;Parent=Physo131320;rank=5 scaffold_15 . exon 409253 410156 . - . ID=Physo131320.5;Parent=Physo131320;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 410247 411366 . - 0 ID=Physo131320;Parent=Physo131320;rank=4 scaffold_15 . exon 410247 411366 . - . ID=Physo131320.4;Parent=Physo131320;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 411489 411584 . - 0 ID=Physo131320;Parent=Physo131320;rank=3 scaffold_15 . exon 411489 411584 . - . ID=Physo131320.3;Parent=Physo131320;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 411765 412016 . - 0 ID=Physo131320;Parent=Physo131320;rank=2 scaffold_15 . exon 411765 412016 . - . ID=Physo131320.2;Parent=Physo131320;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 412083 412314 . - 0 ID=Physo131320;Parent=Physo131320;rank=1 scaffold_15 . exon 412083 412314 . - . ID=Physo131320.1;Parent=Physo131320;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 414300 415931 . + . ID=Physo131321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150092;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 414300 415931 . + . ID=Physo131321;Parent=Physo131321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 414300 415931 . + 0 ID=Physo131321;Parent=Physo131321;rank=1 scaffold_15 . exon 414300 415931 . + . ID=Physo131321.1;Parent=Physo131321;constitutive=1;rank=1 scaffold_15 . repeat_region 419996 420219 . - . description=Polinton-1_PI scaffold_15 . biological_region 423646 423651 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 425646 427308 . - . ID=Physo108539;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150008;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 425646 427308 . - . ID=Physo108539;Parent=Physo108539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 425646 425843 . - 0 ID=Physo108539;Parent=Physo108539;rank=8 scaffold_15 . exon 425646 425843 . - . ID=Physo108539.8;Parent=Physo108539;constitutive=1;rank=8 scaffold_15 . CDS 425888 426079 . - 0 ID=Physo108539;Parent=Physo108539;rank=7 scaffold_15 . exon 425888 426079 . - . ID=Physo108539.7;Parent=Physo108539;constitutive=1;rank=7 scaffold_15 . CDS 426114 426660 . - 0 ID=Physo108539;Parent=Physo108539;rank=6 scaffold_15 . CDS 426690 426780 . - 0 ID=Physo108539;Parent=Physo108539;rank=5 scaffold_15 . CDS 426815 427039 . - 0 ID=Physo108539;Parent=Physo108539;rank=4 scaffold_15 . CDS 427071 427071 . - 0 ID=Physo108539;Parent=Physo108539;rank=3 scaffold_15 . CDS 427110 427153 . - 0 ID=Physo108539;Parent=Physo108539;rank=2 scaffold_15 . CDS 427239 427308 . - 0 ID=Physo108539;Parent=Physo108539;rank=1 scaffold_15 ensembl protein_coding_gene 420628 421034 . - . ID=Physo131322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150093;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 420628 421034 . - . ID=Physo131322;Parent=Physo131322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 420628 420783 . - 0 ID=Physo131322;Parent=Physo131322;rank=2 scaffold_15 . exon 420628 420783 . - . ID=Physo131322.2;Parent=Physo131322;constitutive=1;rank=2 scaffold_15 . CDS 420861 421034 . - 0 ID=Physo131322;Parent=Physo131322;rank=1 scaffold_15 . exon 420861 421034 . - . ID=Physo131322.1;Parent=Physo131322;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 421737 422300 . + . ID=Physo131323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150094;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 421737 422300 . + . ID=Physo131323;Parent=Physo131323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 421737 421765 . + . ID=Physo131323.1;Parent=Physo131323;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . exon 421885 421958 . + . ID=Physo131323.2;Parent=Physo131323;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_15 . exon 422034 422300 . + . ID=Physo131323.3;Parent=Physo131323;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_15 . CDS 422035 422298 . + 0 ID=Physo131323;Parent=Physo131323;rank=1 scaffold_15 . repeat_region 428761 428771 . ? . description=dust scaffold_15 . repeat_region 429120 429127 . ? . description=dust scaffold_15 . repeat_region 432146 432170 . ? . description=trf scaffold_15 . repeat_region 432922 432929 . ? . description=dust scaffold_15 . exon 426114 426660 . - . ID=Physo108539.6;Parent=Physo108539;constitutive=1;ensembl_phase=2;rank=6 scaffold_15 . exon 426690 426780 . - . ID=Physo108539.5;Parent=Physo108539;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_15 . exon 426815 427039 . - . ID=Physo108539.4;Parent=Physo108539;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_15 . exon 427071 427071 . - . ID=Physo108539.3;Parent=Physo108539;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . exon 427110 427153 . - . ID=Physo108539.2;Parent=Physo108539;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . exon 427239 427308 . - . ID=Physo108539.1;Parent=Physo108539;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 430036 431288 . + . ID=Physo131325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150096;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 430036 431288 . + . ID=Physo131325;Parent=Physo131325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 430036 430248 . + . ID=Physo131325.1;Parent=Physo131325;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_15 . CDS 430187 430248 . + 0 ID=Physo131325;Parent=Physo131325;rank=1 scaffold_15 . CDS 430340 430631 . + 0 ID=Physo131325;Parent=Physo131325;rank=2 scaffold_15 . exon 430340 430631 . + . ID=Physo131325.2;Parent=Physo131325;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 430729 431094 . + 0 ID=Physo131325;Parent=Physo131325;rank=3 scaffold_15 . exon 430729 431288 . + . ID=Physo131325.3;Parent=Physo131325;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_15 ensembl protein_coding_gene 431356 431974 . - . ID=Physo131326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150097;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 431356 431974 . - . ID=Physo131326;Parent=Physo131326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 431356 431769 . - . ID=Physo131326.3;Parent=Physo131326;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_15 . CDS 431371 431769 . - 0 ID=Physo131326;Parent=Physo131326;rank=3 scaffold_15 . CDS 431831 431925 . - 0 ID=Physo131326;Parent=Physo131326;rank=2 scaffold_15 . exon 431831 431925 . - . ID=Physo131326.2;Parent=Physo131326;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 431953 431974 . - 0 ID=Physo131326;Parent=Physo131326;rank=1 scaffold_15 . exon 431953 431974 . - . ID=Physo131326.1;Parent=Physo131326;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . biological_region 439665 439667 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 437959 441480 . - . ID=Physo131327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150098;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 437959 441480 . - . ID=Physo131327;Parent=Physo131327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 437959 440566 . - 0 ID=Physo131327;Parent=Physo131327;rank=3 scaffold_15 . exon 437959 440566 . - . ID=Physo131327.3;Parent=Physo131327;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 440622 441026 . - 0 ID=Physo131327;Parent=Physo131327;rank=2 scaffold_15 . exon 440622 441026 . - . ID=Physo131327.2;Parent=Physo131327;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_15 . CDS 441056 441480 . - 0 ID=Physo131327;Parent=Physo131327;rank=1 scaffold_15 . exon 441056 441480 . - . ID=Physo131327.1;Parent=Physo131327;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . repeat_region 447105 447141 . ? . description=trf scaffold_15 . repeat_region 447463 447498 . ? . description=trf scaffold_15 . repeat_region 447503 447533 . ? . description=trf scaffold_15 . repeat_region 451909 451944 . ? . description=trf scaffold_15 . repeat_region 451949 451979 . ? . description=trf scaffold_15 . repeat_region 452019 452071 . ? . description=trf scaffold_15 . repeat_region 452019 452071 . ? . description=trf scaffold_15 . repeat_region 452422 452429 . ? . description=dust scaffold_15 . repeat_region 453796 453803 . ? . description=dust scaffold_15 ensembl protein_coding_gene 450221 451846 . + . ID=Physo108540;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150009;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 450221 451846 . + . ID=Physo108540;Parent=Physo108540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 450221 450585 . + 0 ID=Physo108540;Parent=Physo108540;rank=1 scaffold_15 . exon 450221 450585 . + . ID=Physo108540.1;Parent=Physo108540;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 450838 451846 . + 0 ID=Physo108540;Parent=Physo108540;rank=2 scaffold_15 . exon 450838 451846 . + . ID=Physo108540.2;Parent=Physo108540;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 ensembl protein_coding_gene 447772 450117 . + . ID=Physo131328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150099;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 447772 450117 . + . ID=Physo131328;Parent=Physo131328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 447772 448609 . + 0 ID=Physo131328;Parent=Physo131328;rank=1 scaffold_15 . exon 447772 448609 . + . ID=Physo131328.1;Parent=Physo131328;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 448660 450116 . + 0 ID=Physo131328;Parent=Physo131328;rank=2 scaffold_15 . exon 448660 450117 . + . ID=Physo131328.2;Parent=Physo131328;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_15 . biological_region 464249 464254 0.999 + . logic_name=eponine scaffold_15 . biological_region 464667 464672 0.999 - . logic_name=eponine scaffold_15 . biological_region 464716 464718 0.999 - . logic_name=eponine scaffold_15 . biological_region 465308 465309 0.999 + . logic_name=eponine scaffold_15 . biological_region 465455 465461 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 465513 469718 . + . ID=Physo108541;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150010;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 465513 469718 . + . ID=Physo108541;Parent=Physo108541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 465513 465561 . + 0 ID=Physo108541;Parent=Physo108541;rank=1 scaffold_15 . exon 465513 465561 . + . ID=Physo108541.1;Parent=Physo108541;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 465658 466187 . + 0 ID=Physo108541;Parent=Physo108541;rank=2 scaffold_15 . CDS 466603 466607 . + 0 ID=Physo108541;Parent=Physo108541;rank=3 scaffold_15 . CDS 469712 469718 . + 0 ID=Physo108541;Parent=Physo108541;rank=4 scaffold_15 ensembl protein_coding_gene 458735 460679 . - . ID=Physo131330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150101;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 458735 460679 . - . ID=Physo131330;Parent=Physo131330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 458735 458745 . - 0 ID=Physo131330;Parent=Physo131330;rank=3 scaffold_15 . exon 458735 458745 . - . ID=Physo131330.3;Parent=Physo131330;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 458813 459768 . - 0 ID=Physo131330;Parent=Physo131330;rank=2 scaffold_15 . exon 458813 459768 . - . ID=Physo131330.2;Parent=Physo131330;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 459928 460679 . - 0 ID=Physo131330;Parent=Physo131330;rank=1 scaffold_15 . exon 459928 460679 . - . ID=Physo131330.1;Parent=Physo131330;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 462656 465203 . - . ID=Physo131331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150102;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 462656 465203 . - . ID=Physo131331;Parent=Physo131331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 462656 463265 . - 0 ID=Physo131331;Parent=Physo131331;rank=6 scaffold_15 . exon 462656 463265 . - . ID=Physo131331.6;Parent=Physo131331;constitutive=1;ensembl_phase=2;rank=6 scaffold_15 . CDS 463334 463436 . - 0 ID=Physo131331;Parent=Physo131331;rank=5 scaffold_15 . exon 463334 463436 . - . ID=Physo131331.5;Parent=Physo131331;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_15 . CDS 463496 463666 . - 0 ID=Physo131331;Parent=Physo131331;rank=4 scaffold_15 . exon 463496 463666 . - . ID=Physo131331.4;Parent=Physo131331;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 463743 463899 . - 0 ID=Physo131331;Parent=Physo131331;rank=3 scaffold_15 . exon 463743 463899 . - . ID=Physo131331.3;Parent=Physo131331;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 463976 464743 . - 0 ID=Physo131331;Parent=Physo131331;rank=2 scaffold_15 . exon 463976 464743 . - . ID=Physo131331.2;Parent=Physo131331;constitutive=1;rank=2 scaffold_15 . CDS 464877 465203 . - 0 ID=Physo131331;Parent=Physo131331;rank=1 scaffold_15 . exon 464877 465203 . - . ID=Physo131331.1;Parent=Physo131331;constitutive=1;rank=1 scaffold_15 . repeat_region 466227 466286 . ? . description=dust scaffold_15 . repeat_region 467365 467373 . ? . description=dust scaffold_15 . exon 465658 466187 . + . ID=Physo108541.2;Parent=Physo108541;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . exon 466603 466607 . + . ID=Physo108541.3;Parent=Physo108541;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . exon 469712 469718 . + . ID=Physo108541.4;Parent=Physo108541;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 ensembl protein_coding_gene 470400 473531 . - . ID=Physo108542;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150011;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 470400 473531 . - . ID=Physo108542;Parent=Physo108542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 470400 470681 . - . ID=Physo108542.4;Parent=Physo108542;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_15 . CDS 470463 470681 . - 0 ID=Physo108542;Parent=Physo108542;rank=4 scaffold_15 . CDS 470739 471557 . - 0 ID=Physo108542;Parent=Physo108542;rank=3 scaffold_15 . exon 470739 471557 . - . ID=Physo108542.3;Parent=Physo108542;constitutive=1;rank=3 scaffold_15 . CDS 471630 472724 . - 0 ID=Physo108542;Parent=Physo108542;rank=2 scaffold_15 . exon 471630 472724 . - . ID=Physo108542.2;Parent=Physo108542;constitutive=1;rank=2 scaffold_15 . CDS 472758 473531 . - 0 ID=Physo108542;Parent=Physo108542;rank=1 scaffold_15 . exon 472758 473531 . - . ID=Physo108542.1;Parent=Physo108542;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 474279 477299 . + . ID=Physo156259;biotype=protein_coding;external_name=C_scaffold_15000029;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 474279 477299 . + . ID=Physo156259;Parent=Physo156259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 474279 474629 . + 0 ID=Physo156259;Parent=Physo156259;rank=1 scaffold_15 . exon 474279 474629 . + . ID=Physo156259.1;Parent=Physo156259;constitutive=1;rank=1 scaffold_15 . CDS 474780 474882 . + 0 ID=Physo156259;Parent=Physo156259;rank=2 scaffold_15 . exon 474780 474882 . + . ID=Physo156259.2;Parent=Physo156259;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 475288 475502 . + 0 ID=Physo156259;Parent=Physo156259;rank=3 scaffold_15 . exon 475288 475502 . + . ID=Physo156259.3;Parent=Physo156259;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 476166 476757 . + 0 ID=Physo156259;Parent=Physo156259;rank=4 scaffold_15 . CDS 476794 477299 . + 0 ID=Physo156259;Parent=Physo156259;rank=5 scaffold_15 . biological_region 477780 477782 0.999 + . logic_name=eponine scaffold_15 . repeat_region 478684 478722 . ? . description=trf scaffold_15 . repeat_region 478692 478725 . ? . description=trf scaffold_15 . biological_region 478889 478890 0.999 - . logic_name=eponine scaffold_15 . biological_region 479036 479038 0.999 + . logic_name=eponine scaffold_15 . biological_region 479350 479356 0.999 + . logic_name=eponine scaffold_15 . repeat_region 479569 479611 . ? . description=trf scaffold_15 . repeat_region 479569 479611 . ? . description=trf scaffold_15 . biological_region 479710 479711 0.999 - . logic_name=eponine scaffold_15 . biological_region 479764 479768 0.999 + . logic_name=eponine scaffold_15 . biological_region 479784 479787 0.999 + . logic_name=eponine scaffold_15 . biological_region 479789 479792 0.999 - . logic_name=eponine scaffold_15 . biological_region 480213 480218 0.999 + . logic_name=eponine scaffold_15 . biological_region 480233 480236 0.999 + . logic_name=eponine scaffold_15 . biological_region 480257 480262 0.999 - . logic_name=eponine scaffold_15 . biological_region 480278 480286 0.999 - . logic_name=eponine scaffold_15 . biological_region 480279 480283 0.999 + . logic_name=eponine scaffold_15 . biological_region 480300 480311 0.999 - . logic_name=eponine scaffold_15 . biological_region 480333 480340 0.999 - . logic_name=eponine scaffold_15 . biological_region 480334 480339 0.999 + . logic_name=eponine scaffold_15 . biological_region 480356 480366 0.999 - . logic_name=eponine scaffold_15 . biological_region 480358 480362 0.999 + . logic_name=eponine scaffold_15 . biological_region 480389 480392 0.999 + . logic_name=eponine scaffold_15 . biological_region 480399 480404 0.999 - . logic_name=eponine scaffold_15 . biological_region 480426 480433 0.999 - . logic_name=eponine scaffold_15 . biological_region 480590 480597 0.999 - . logic_name=eponine scaffold_15 . biological_region 480804 480811 0.999 - . logic_name=eponine scaffold_15 . biological_region 480805 480812 0.999 + . logic_name=eponine scaffold_15 . biological_region 480858 480868 0.999 + . logic_name=eponine scaffold_15 . biological_region 480868 480871 0.999 - . logic_name=eponine scaffold_15 . biological_region 480900 480900 0.999 + . logic_name=eponine scaffold_15 . biological_region 480921 480924 0.999 + . logic_name=eponine scaffold_15 . biological_region 480944 480948 0.999 - . logic_name=eponine scaffold_15 . biological_region 480966 480972 0.999 + . logic_name=eponine scaffold_15 . biological_region 480985 480988 0.999 + . logic_name=eponine scaffold_15 . biological_region 481016 481017 0.999 + . logic_name=eponine scaffold_15 . biological_region 481026 481027 0.999 - . logic_name=eponine scaffold_15 . biological_region 481042 481051 0.999 - . logic_name=eponine scaffold_15 . biological_region 481080 481084 0.999 - . logic_name=eponine scaffold_15 . biological_region 481100 481104 0.999 + . logic_name=eponine scaffold_15 . repeat_region 481336 481356 . ? . description=trf scaffold_15 . biological_region 481749 481752 0.999 + . logic_name=eponine scaffold_15 . biological_region 481811 481819 0.999 + . logic_name=eponine scaffold_15 . biological_region 481875 481879 0.999 + . logic_name=eponine scaffold_15 . biological_region 481883 481884 0.999 - . logic_name=eponine scaffold_15 . biological_region 482061 482061 0.999 + . logic_name=eponine scaffold_15 . biological_region 482100 482101 0.999 - . logic_name=eponine scaffold_15 . biological_region 482104 482107 0.999 + . logic_name=eponine scaffold_15 . biological_region 482130 482132 0.999 + . logic_name=eponine scaffold_15 . biological_region 482156 482156 0.999 + . logic_name=eponine scaffold_15 . biological_region 482391 482398 0.999 + . logic_name=eponine scaffold_15 . biological_region 483496 483499 0.999 + . logic_name=eponine scaffold_15 . biological_region 483588 483592 0.999 + . logic_name=eponine scaffold_15 . biological_region 483656 483656 0.999 - . logic_name=eponine scaffold_15 . biological_region 484634 484638 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 479374 480097 . - . ID=Physo131336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150107;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 479374 480097 . - . ID=Physo131336;Parent=Physo131336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 479374 480097 . - . ID=Physo131336.1;Parent=Physo131336;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . CDS 479375 480097 . - 0 ID=Physo131336;Parent=Physo131336;rank=1 scaffold_15 ensembl protein_coding_gene 483445 484236 . + . ID=Physo131337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150108;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 483445 484236 . + . ID=Physo131337;Parent=Physo131337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 483445 484236 . + 0 ID=Physo131337;Parent=Physo131337;rank=1 scaffold_15 . exon 483445 484236 . + . ID=Physo131337.1;Parent=Physo131337;constitutive=1;rank=1 scaffold_15 . exon 476166 476757 . + . ID=Physo156259.4;Parent=Physo156259;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_15 . exon 476794 477299 . + . ID=Physo156259.5;Parent=Physo156259;constitutive=1;ensembl_phase=1;rank=5 scaffold_15 ensembl protein_coding_gene 477417 477911 . - . ID=Physo156260;biotype=protein_coding;external_name=C_scaffold_15000030;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 477417 477911 . - . ID=Physo156260;Parent=Physo156260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 477417 477911 . - 0 ID=Physo156260;Parent=Physo156260;rank=1 scaffold_15 . exon 477417 477911 . - . ID=Physo156260.1;Parent=Physo156260;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 484543 485280 . + . ID=Physo156262;biotype=protein_coding;external_name=C_scaffold_15000032;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 484543 485280 . + . ID=Physo156262;Parent=Physo156262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 484543 485280 . + 0 ID=Physo156262;Parent=Physo156262;rank=1 scaffold_15 . exon 484543 485280 . + . ID=Physo156262.1;Parent=Physo156262;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 485369 486952 . - . ID=Physo156263;biotype=protein_coding;external_name=C_scaffold_15000033;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 485369 486952 . - . ID=Physo156263;Parent=Physo156263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 485369 486028 . - 0 ID=Physo156263;Parent=Physo156263;rank=3 scaffold_15 . exon 485369 486028 . - . ID=Physo156263.3;Parent=Physo156263;constitutive=1;rank=3 scaffold_15 . CDS 486065 486623 . - 0 ID=Physo156263;Parent=Physo156263;rank=2 scaffold_15 . CDS 486654 486952 . - 0 ID=Physo156263;Parent=Physo156263;rank=1 scaffold_15 . repeat_region 487163 487212 . ? . description=dust scaffold_15 . repeat_region 489948 489955 . ? . description=dust scaffold_15 . repeat_region 493832 493858 . ? . description=dust scaffold_15 ensembl protein_coding_gene 489526 491006 . - . ID=Physo131340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150111;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 489526 491006 . - . ID=Physo131340;Parent=Physo131340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 489526 490469 . - . ID=Physo131340.2;Parent=Physo131340;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_15 . CDS 489770 490469 . - 0 ID=Physo131340;Parent=Physo131340;rank=2 scaffold_15 . CDS 490636 491006 . - 0 ID=Physo131340;Parent=Physo131340;rank=1 scaffold_15 . exon 490636 491006 . - . ID=Physo131340.1;Parent=Physo131340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 491318 492625 . - . ID=Physo131341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150112;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 491318 492625 . - . ID=Physo131341;Parent=Physo131341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 491318 492625 . - . ID=Physo131341.1;Parent=Physo131341;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . CDS 491375 492625 . - 0 ID=Physo131341;Parent=Physo131341;rank=1 scaffold_15 ensembl protein_coding_gene 493874 496964 . + . ID=Physo131342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150113;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 493874 496964 . + . ID=Physo131342;Parent=Physo131342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 493874 496879 . + 0 ID=Physo131342;Parent=Physo131342;rank=1 scaffold_15 . exon 493874 496964 . + . ID=Physo131342.1;Parent=Physo131342;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . exon 486065 486623 . - . ID=Physo156263.2;Parent=Physo156263;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . exon 486654 486952 . - . ID=Physo156263.1;Parent=Physo156263;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . biological_region 496077 496080 0.999 - . logic_name=eponine scaffold_15 . repeat_region 496399 496428 . ? . description=trf scaffold_15 . repeat_region 496682 496715 . ? . description=trf scaffold_15 . biological_region 496696 496698 0.999 + . logic_name=eponine scaffold_15 . repeat_region 496804 496842 . ? . description=trf scaffold_15 . repeat_region 496811 496842 . ? . description=trf scaffold_15 . biological_region 497475 497477 0.999 - . logic_name=eponine scaffold_15 . biological_region 497689 497693 0.999 + . logic_name=eponine scaffold_15 . biological_region 497719 497722 0.999 - . logic_name=eponine scaffold_15 . biological_region 497737 497742 0.999 - . logic_name=eponine scaffold_15 . biological_region 497830 497834 0.999 - . logic_name=eponine scaffold_15 . biological_region 497846 497850 0.999 - . logic_name=eponine scaffold_15 . biological_region 498765 498767 0.999 + . logic_name=eponine scaffold_15 . biological_region 499706 499709 0.999 - . logic_name=eponine scaffold_15 . biological_region 500176 500179 0.999 - . logic_name=eponine scaffold_15 . repeat_region 500983 501028 . ? . description=trf scaffold_15 . biological_region 501321 501322 0.999 + . logic_name=eponine scaffold_15 . biological_region 501420 501423 0.999 - . logic_name=eponine scaffold_15 . repeat_region 503924 503964 . ? . description=trf scaffold_15 ensembl protein_coding_gene 497362 499422 . + . ID=Physo108544;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150013;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 497362 499422 . + . ID=Physo108544;Parent=Physo108544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 497362 497473 . + 0 ID=Physo108544;Parent=Physo108544;rank=1 scaffold_15 . exon 497362 497473 . + . ID=Physo108544.1;Parent=Physo108544;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 497564 499422 . + 0 ID=Physo108544;Parent=Physo108544;rank=2 scaffold_15 . exon 497564 499422 . + . ID=Physo108544.2;Parent=Physo108544;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 499627 501601 . + . ID=Physo131344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150115;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 499627 501601 . + . ID=Physo131344;Parent=Physo131344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 499627 499809 . + 0 ID=Physo131344;Parent=Physo131344;rank=1 scaffold_15 . exon 499627 499809 . + . ID=Physo131344.1;Parent=Physo131344;constitutive=1;rank=1 scaffold_15 . CDS 499879 500757 . + 0 ID=Physo131344;Parent=Physo131344;rank=2 scaffold_15 . exon 499879 500757 . + . ID=Physo131344.2;Parent=Physo131344;constitutive=1;rank=2 scaffold_15 . CDS 500832 501003 . + 0 ID=Physo131344;Parent=Physo131344;rank=3 scaffold_15 . exon 500832 501003 . + . ID=Physo131344.3;Parent=Physo131344;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 501051 501064 . + 0 ID=Physo131344;Parent=Physo131344;rank=4 scaffold_15 . exon 501051 501064 . + . ID=Physo131344.4;Parent=Physo131344;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 501187 501466 . + 0 ID=Physo131344;Parent=Physo131344;rank=5 scaffold_15 . exon 501187 501466 . + . ID=Physo131344.5;Parent=Physo131344;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_15 . CDS 501552 501601 . + 0 ID=Physo131344;Parent=Physo131344;rank=6 scaffold_15 . exon 501552 501601 . + . ID=Physo131344.6;Parent=Physo131344;constitutive=1;ensembl_phase=1;rank=6 scaffold_15 ensembl protein_coding_gene 502636 503823 . - . ID=Physo131345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150116;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 502636 503823 . - . ID=Physo131345;Parent=Physo131345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 502636 503823 . - 0 ID=Physo131345;Parent=Physo131345;rank=1 scaffold_15 . exon 502636 503823 . - . ID=Physo131345.1;Parent=Physo131345;constitutive=1;rank=1 scaffold_15 . repeat_region 505828 505837 . ? . description=dust scaffold_15 . repeat_region 508006 508055 . ? . description=dust scaffold_15 . repeat_region 509657 509706 . ? . description=dust scaffold_15 . repeat_region 510506 510555 . ? . description=dust scaffold_15 ensembl protein_coding_gene 507127 507806 . - . ID=Physo108545;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150014;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 507127 507806 . - . ID=Physo108545;Parent=Physo108545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 507127 507714 . - 0 ID=Physo108545;Parent=Physo108545;rank=1 scaffold_15 . exon 507127 507806 . - . ID=Physo108545.1;Parent=Physo108545;constitutive=1;ensembl_phase=-1;rank=1 scaffold_15 ensembl protein_coding_gene 507800 512418 . - . ID=Physo131347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150118;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 507800 512418 . - . ID=Physo131347;Parent=Physo131347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 507800 508003 . - 0 ID=Physo131347;Parent=Physo131347;rank=6 scaffold_15 . exon 507800 508003 . - . ID=Physo131347.6;Parent=Physo131347;constitutive=1;rank=6 scaffold_15 . CDS 508067 508763 . - 0 ID=Physo131347;Parent=Physo131347;rank=5 scaffold_15 . exon 508067 508763 . - . ID=Physo131347.5;Parent=Physo131347;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 508842 509644 . - 0 ID=Physo131347;Parent=Physo131347;rank=4 scaffold_15 . exon 508842 509644 . - . ID=Physo131347.4;Parent=Physo131347;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_15 . CDS 509716 510501 . - 0 ID=Physo131347;Parent=Physo131347;rank=3 scaffold_15 . exon 509716 510501 . - . ID=Physo131347.3;Parent=Physo131347;constitutive=1;rank=3 scaffold_15 . CDS 510620 511454 . - 0 ID=Physo131347;Parent=Physo131347;rank=2 scaffold_15 . exon 510620 511454 . - . ID=Physo131347.2;Parent=Physo131347;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 511484 512418 . - 0 ID=Physo131347;Parent=Physo131347;rank=1 scaffold_15 . exon 511484 512418 . - . ID=Physo131347.1;Parent=Physo131347;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . biological_region 520182 520183 0.999 + . logic_name=eponine scaffold_15 . repeat_region 520873 520908 . ? . description=trf scaffold_15 . repeat_region 520977 521009 . ? . description=trf scaffold_15 . biological_region 524189 524190 0.999 + . logic_name=eponine scaffold_15 . biological_region 524592 524595 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 520489 520971 . + . ID=Physo108546;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150015;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 520489 520971 . + . ID=Physo108546;Parent=Physo108546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 520489 520843 . + 0 ID=Physo108546;Parent=Physo108546;rank=1 scaffold_15 . exon 520489 520843 . + . ID=Physo108546.1;Parent=Physo108546;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 520913 520971 . + 0 ID=Physo108546;Parent=Physo108546;rank=2 scaffold_15 . exon 520913 520971 . + . ID=Physo108546.2;Parent=Physo108546;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 523609 524928 . - . ID=Physo131349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150120;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 523609 524928 . - . ID=Physo131349;Parent=Physo131349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 523609 524928 . - 0 ID=Physo131349;Parent=Physo131349;rank=1 scaffold_15 . exon 523609 524928 . - . ID=Physo131349.1;Parent=Physo131349;constitutive=1;rank=1 scaffold_15 . repeat_region 525692 525708 . ? . description=dust scaffold_15 . repeat_region 526515 526522 . ? . description=dust scaffold_15 ensembl protein_coding_gene 526103 526492 . - . ID=Physo131350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150121;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 526103 526492 . - . ID=Physo131350;Parent=Physo131350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 526103 526492 . - 0 ID=Physo131350;Parent=Physo131350;rank=1 scaffold_15 . exon 526103 526492 . - . ID=Physo131350.1;Parent=Physo131350;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 527804 528512 . - . ID=Physo131351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150122;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 527804 528512 . - . ID=Physo131351;Parent=Physo131351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 527804 528136 . - 0 ID=Physo131351;Parent=Physo131351;rank=2 scaffold_15 . exon 527804 528136 . - . ID=Physo131351.2;Parent=Physo131351;constitutive=1;rank=2 scaffold_15 . CDS 528222 528512 . - 0 ID=Physo131351;Parent=Physo131351;rank=1 scaffold_15 . exon 528222 528512 . - . ID=Physo131351.1;Parent=Physo131351;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 529847 530282 . - . ID=Physo131352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150123;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 529847 530282 . - . ID=Physo131352;Parent=Physo131352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 529847 529873 . - 0 ID=Physo131352;Parent=Physo131352;rank=2 scaffold_15 . exon 529847 529873 . - . ID=Physo131352.2;Parent=Physo131352;constitutive=1;rank=2 scaffold_15 . CDS 529953 530282 . - 0 ID=Physo131352;Parent=Physo131352;rank=1 scaffold_15 . exon 529953 530282 . - . ID=Physo131352.1;Parent=Physo131352;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 531284 532021 . - . ID=Physo131353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150124;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 531284 532021 . - . ID=Physo131353;Parent=Physo131353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 531284 532021 . - 0 ID=Physo131353;Parent=Physo131353;rank=1 scaffold_15 . exon 531284 532021 . - . ID=Physo131353.1;Parent=Physo131353;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 533209 535038 . + . ID=Physo131354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150125;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 533209 535038 . + . ID=Physo131354;Parent=Physo131354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 533209 535038 . + 0 ID=Physo131354;Parent=Physo131354;rank=1 scaffold_15 . exon 533209 535038 . + . ID=Physo131354.1;Parent=Physo131354;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 537282 537800 . - . ID=Physo131355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150126;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 537282 537800 . - . ID=Physo131355;Parent=Physo131355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 537282 537800 . - 0 ID=Physo131355;Parent=Physo131355;rank=1 scaffold_15 . exon 537282 537800 . - . ID=Physo131355.1;Parent=Physo131355;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 539606 540617 . - . ID=Physo131356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150127;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 539606 540617 . - . ID=Physo131356;Parent=Physo131356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 539606 539912 . - 0 ID=Physo131356;Parent=Physo131356;rank=5 scaffold_15 . exon 539606 539912 . - . ID=Physo131356.5;Parent=Physo131356;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 539951 540149 . - 0 ID=Physo131356;Parent=Physo131356;rank=4 scaffold_15 . exon 539951 540149 . - . ID=Physo131356.4;Parent=Physo131356;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_15 . CDS 540224 540242 . - 0 ID=Physo131356;Parent=Physo131356;rank=3 scaffold_15 . exon 540224 540242 . - . ID=Physo131356.3;Parent=Physo131356;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 540449 540477 . - 0 ID=Physo131356;Parent=Physo131356;rank=2 scaffold_15 . exon 540449 540477 . - . ID=Physo131356.2;Parent=Physo131356;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 540569 540617 . - 0 ID=Physo131356;Parent=Physo131356;rank=1 scaffold_15 . exon 540569 540617 . - . ID=Physo131356.1;Parent=Physo131356;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 542034 542669 . - . ID=Physo131357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150128;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 542034 542669 . - . ID=Physo131357;Parent=Physo131357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 542034 542657 . - 0 ID=Physo131357;Parent=Physo131357;rank=1 scaffold_15 . exon 542034 542669 . - . ID=Physo131357.1;Parent=Physo131357;constitutive=1;ensembl_phase=-1;rank=1 scaffold_15 ensembl protein_coding_gene 542892 543320 . - . ID=Physo131358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150129;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 542892 543320 . - . ID=Physo131358;Parent=Physo131358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 542892 543320 . - 0 ID=Physo131358;Parent=Physo131358;rank=1 scaffold_15 . exon 542892 543320 . - . ID=Physo131358.1;Parent=Physo131358;constitutive=1;rank=1 scaffold_15 . repeat_region 546157 546168 . ? . description=dust scaffold_15 . biological_region 546670 546671 0.999 - . logic_name=eponine scaffold_15 . biological_region 546762 546764 0.999 + . logic_name=eponine scaffold_15 . repeat_region 550126 550133 . ? . description=dust scaffold_15 . repeat_region 552336 552363 . ? . description=dust scaffold_15 . repeat_region 552346 552370 . ? . description=trf scaffold_15 . repeat_region 553694 553744 . ? . description=dust scaffold_15 . repeat_region 553704 553761 . ? . description=trf scaffold_15 . biological_region 553973 553978 0.999 + . logic_name=eponine scaffold_15 . biological_region 553992 553998 0.999 + . logic_name=eponine scaffold_15 . biological_region 554019 554024 0.999 - . logic_name=eponine scaffold_15 . biological_region 554029 554030 0.999 + . logic_name=eponine scaffold_15 . biological_region 554067 554071 0.999 - . logic_name=eponine scaffold_15 . biological_region 554130 554135 0.999 - . logic_name=eponine scaffold_15 . biological_region 554169 554176 0.999 - . logic_name=eponine scaffold_15 . biological_region 554227 554233 0.999 + . logic_name=eponine scaffold_15 . biological_region 554269 554275 0.999 - . logic_name=eponine scaffold_15 . biological_region 554321 554325 0.999 - . logic_name=eponine scaffold_15 . biological_region 554325 554328 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 548144 548935 . + . ID=Physo131360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150131;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 548144 548935 . + . ID=Physo131360;Parent=Physo131360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 548144 548935 . + 0 ID=Physo131360;Parent=Physo131360;rank=1 scaffold_15 . exon 548144 548935 . + . ID=Physo131360.1;Parent=Physo131360;constitutive=1;rank=1 scaffold_15 ensembl pseudogene 550586 552059 . - . ID=Physo131361;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_150132;logic_name=jgi_physo1_1 scaffold_15 ensembl pseudogene 550586 552059 . - . ID=Physo131361;Parent=Physo131361;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_15 . exon 550586 550649 . - . ID=Physo131361.3;Parent=Physo131361;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_15 . exon 550797 551852 . - . ID=Physo131361.2;Parent=Physo131361;constitutive=1;rank=2 scaffold_15 . exon 551964 552059 . - . ID=Physo131361.1;Parent=Physo131361;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 554737 556537 . - . ID=Physo131362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150133;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 554737 556537 . - . ID=Physo131362;Parent=Physo131362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 554737 556346 . - . ID=Physo131362.2;Parent=Physo131362;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_15 . CDS 554900 556324 . - 0 ID=Physo131362;Parent=Physo131362;rank=1 scaffold_15 ensembl protein_coding_gene 546187 546831 . + . ID=Physo156264;biotype=protein_coding;external_name=C_scaffold_15000034;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 546187 546831 . + . ID=Physo156264;Parent=Physo156264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 546187 546579 . + 0 ID=Physo156264;Parent=Physo156264;rank=1 scaffold_15 . exon 546187 546579 . + . ID=Physo156264.1;Parent=Physo156264;constitutive=1;rank=1 scaffold_15 . CDS 546604 546831 . + 0 ID=Physo156264;Parent=Physo156264;rank=2 scaffold_15 . exon 546604 546831 . + . ID=Physo156264.2;Parent=Physo156264;constitutive=1;rank=2 scaffold_15 . exon 556531 556537 . - . ID=Physo131362.1;Parent=Physo131362;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . biological_region 568069 568071 0.999 + . logic_name=eponine scaffold_15 . biological_region 574139 574140 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 566258 567403 . - . ID=Physo131363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150134;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 566258 567403 . - . ID=Physo131363;Parent=Physo131363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 566258 567403 . - 0 ID=Physo131363;Parent=Physo131363;rank=1 scaffold_15 . exon 566258 567403 . - . ID=Physo131363.1;Parent=Physo131363;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 568117 569437 . + . ID=Physo131364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150135;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 568117 569437 . + . ID=Physo131364;Parent=Physo131364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 568117 568317 . + 0 ID=Physo131364;Parent=Physo131364;rank=1 scaffold_15 . exon 568117 568317 . + . ID=Physo131364.1;Parent=Physo131364;constitutive=1;rank=1 scaffold_15 . CDS 568385 568670 . + 0 ID=Physo131364;Parent=Physo131364;rank=2 scaffold_15 . exon 568385 568670 . + . ID=Physo131364.2;Parent=Physo131364;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 568738 568913 . + 0 ID=Physo131364;Parent=Physo131364;rank=3 scaffold_15 . exon 568738 568913 . + . ID=Physo131364.3;Parent=Physo131364;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 568983 569086 . + 0 ID=Physo131364;Parent=Physo131364;rank=4 scaffold_15 . exon 568983 569086 . + . ID=Physo131364.4;Parent=Physo131364;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_15 . CDS 569152 569437 . + 0 ID=Physo131364;Parent=Physo131364;rank=5 scaffold_15 . exon 569152 569437 . + . ID=Physo131364.5;Parent=Physo131364;constitutive=1;ensembl_phase=2;rank=5 scaffold_15 ensembl protein_coding_gene 569946 571415 . + . ID=Physo131365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150136;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 569946 571415 . + . ID=Physo131365;Parent=Physo131365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 569946 570164 . + 0 ID=Physo131365;Parent=Physo131365;rank=1 scaffold_15 . exon 569946 570164 . + . ID=Physo131365.1;Parent=Physo131365;constitutive=1;rank=1 scaffold_15 . CDS 570250 570392 . + 0 ID=Physo131365;Parent=Physo131365;rank=2 scaffold_15 . exon 570250 570392 . + . ID=Physo131365.2;Parent=Physo131365;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_15 . CDS 570471 570613 . + 0 ID=Physo131365;Parent=Physo131365;rank=3 scaffold_15 . exon 570471 570613 . + . ID=Physo131365.3;Parent=Physo131365;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 570661 570866 . + 0 ID=Physo131365;Parent=Physo131365;rank=4 scaffold_15 . exon 570661 570866 . + . ID=Physo131365.4;Parent=Physo131365;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 570945 571048 . + 0 ID=Physo131365;Parent=Physo131365;rank=5 scaffold_15 . exon 570945 571048 . + . ID=Physo131365.5;Parent=Physo131365;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_15 . CDS 571130 571415 . + 0 ID=Physo131365;Parent=Physo131365;rank=6 scaffold_15 . exon 571130 571415 . + . ID=Physo131365.6;Parent=Physo131365;constitutive=1;ensembl_phase=2;rank=6 scaffold_15 ensembl protein_coding_gene 572277 573341 . - . ID=Physo131366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150137;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 572277 573341 . - . ID=Physo131366;Parent=Physo131366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 572277 573341 . - 0 ID=Physo131366;Parent=Physo131366;rank=1 scaffold_15 . exon 572277 573341 . - . ID=Physo131366.1;Parent=Physo131366;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 573745 581066 . - . ID=Physo131367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150138;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 573745 581066 . - . ID=Physo131367;Parent=Physo131367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 573745 581066 . - . ID=Physo131367.1;Parent=Physo131367;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . CDS 573864 581066 . - 0 ID=Physo131367;Parent=Physo131367;rank=1 scaffold_15 . repeat_region 584217 584231 . ? . description=dust scaffold_15 ensembl protein_coding_gene 581262 581904 . - . ID=Physo131368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150139;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 581262 581904 . - . ID=Physo131368;Parent=Physo131368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 581262 581428 . - 0 ID=Physo131368;Parent=Physo131368;rank=4 scaffold_15 . exon 581262 581428 . - . ID=Physo131368.4;Parent=Physo131368;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 581538 581670 . - 0 ID=Physo131368;Parent=Physo131368;rank=3 scaffold_15 . exon 581538 581670 . - . ID=Physo131368.3;Parent=Physo131368;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 581763 581792 . - 0 ID=Physo131368;Parent=Physo131368;rank=2 scaffold_15 . exon 581763 581792 . - . ID=Physo131368.2;Parent=Physo131368;constitutive=1;rank=2 scaffold_15 . CDS 581888 581902 . - 0 ID=Physo131368;Parent=Physo131368;rank=1 scaffold_15 . exon 581888 581904 . - . ID=Physo131368.1;Parent=Physo131368;constitutive=1;ensembl_phase=-1;rank=1 scaffold_15 . repeat_region 587553 587606 . ? . description=trf scaffold_15 . repeat_region 588315 588360 . ? . description=trf scaffold_15 . repeat_region 588315 588360 . + . description=(CTA)n scaffold_15 . biological_region 594084 594088 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 591454 594708 . - . ID=Physo131369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150140;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 591454 594708 . - . ID=Physo131369;Parent=Physo131369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 591454 591882 . - 0 ID=Physo131369;Parent=Physo131369;rank=5 scaffold_15 . exon 591454 591882 . - . ID=Physo131369.5;Parent=Physo131369;constitutive=1;rank=5 scaffold_15 . CDS 592143 592472 . - 0 ID=Physo131369;Parent=Physo131369;rank=4 scaffold_15 . exon 592143 592472 . - . ID=Physo131369.4;Parent=Physo131369;constitutive=1;rank=4 scaffold_15 . CDS 592565 592702 . - 0 ID=Physo131369;Parent=Physo131369;rank=3 scaffold_15 . exon 592565 592702 . - . ID=Physo131369.3;Parent=Physo131369;constitutive=1;rank=3 scaffold_15 . CDS 592729 593241 . - 0 ID=Physo131369;Parent=Physo131369;rank=2 scaffold_15 . exon 592729 593241 . - . ID=Physo131369.2;Parent=Physo131369;constitutive=1;rank=2 scaffold_15 . CDS 593287 594708 . - 0 ID=Physo131369;Parent=Physo131369;rank=1 scaffold_15 . exon 593287 594708 . - . ID=Physo131369.1;Parent=Physo131369;constitutive=1;rank=1 scaffold_15 . repeat_region 596332 596340 . ? . description=dust scaffold_15 ensembl protein_coding_gene 598304 599353 . - . ID=Physo131370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150141;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 598304 599353 . - . ID=Physo131370;Parent=Physo131370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 598304 599353 . - 0 ID=Physo131370;Parent=Physo131370;rank=1 scaffold_15 . exon 598304 599353 . - . ID=Physo131370.1;Parent=Physo131370;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 600795 601904 . + . ID=Physo131371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150142;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 600795 601904 . + . ID=Physo131371;Parent=Physo131371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 600795 601904 . + 0 ID=Physo131371;Parent=Physo131371;rank=1 scaffold_15 . exon 600795 601904 . + . ID=Physo131371.1;Parent=Physo131371;constitutive=1;rank=1 scaffold_15 . biological_region 607521 607521 0.999 + . logic_name=eponine scaffold_15 . biological_region 610071 610073 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 604802 605697 . + . ID=Physo131372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150143;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 604802 605697 . + . ID=Physo131372;Parent=Physo131372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 604802 604895 . + 0 ID=Physo131372;Parent=Physo131372;rank=1 scaffold_15 . exon 604802 604895 . + . ID=Physo131372.1;Parent=Physo131372;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 604925 605697 . + 0 ID=Physo131372;Parent=Physo131372;rank=2 scaffold_15 . exon 604925 605697 . + . ID=Physo131372.2;Parent=Physo131372;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 605769 609187 . - . ID=Physo131373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150144;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 605769 609187 . - . ID=Physo131373;Parent=Physo131373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 605769 606204 . - 0 ID=Physo131373;Parent=Physo131373;rank=4 scaffold_15 . exon 605769 606204 . - . ID=Physo131373.4;Parent=Physo131373;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 606252 607711 . - 0 ID=Physo131373;Parent=Physo131373;rank=3 scaffold_15 . exon 606252 607711 . - . ID=Physo131373.3;Parent=Physo131373;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . CDS 607800 608763 . - 0 ID=Physo131373;Parent=Physo131373;rank=2 scaffold_15 . exon 607800 608763 . - . ID=Physo131373.2;Parent=Physo131373;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 608811 609187 . - 0 ID=Physo131373;Parent=Physo131373;rank=1 scaffold_15 . exon 608811 609187 . - . ID=Physo131373.1;Parent=Physo131373;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 609933 611054 . + . ID=Physo131374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150145;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 609933 611054 . + . ID=Physo131374;Parent=Physo131374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 609933 611054 . + 0 ID=Physo131374;Parent=Physo131374;rank=1 scaffold_15 . exon 609933 611054 . + . ID=Physo131374.1;Parent=Physo131374;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 612094 613127 . + . ID=Physo131375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150146;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 612094 613127 . + . ID=Physo131375;Parent=Physo131375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 612094 612154 . + 0 ID=Physo131375;Parent=Physo131375;rank=1 scaffold_15 . exon 612094 612154 . + . ID=Physo131375.1;Parent=Physo131375;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 612442 613127 . + 0 ID=Physo131375;Parent=Physo131375;rank=2 scaffold_15 . exon 612442 613127 . + . ID=Physo131375.2;Parent=Physo131375;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . repeat_region 615252 615259 . ? . description=dust scaffold_15 . repeat_region 621740 621747 . ? . description=dust scaffold_15 ensembl protein_coding_gene 615796 619193 . + . ID=Physo131376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150147;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 615796 619193 . + . ID=Physo131376;Parent=Physo131376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 615796 617499 . + 0 ID=Physo131376;Parent=Physo131376;rank=1 scaffold_15 . exon 615796 617499 . + . ID=Physo131376.1;Parent=Physo131376;constitutive=1;rank=1 scaffold_15 . CDS 617571 619193 . + 0 ID=Physo131376;Parent=Physo131376;rank=2 scaffold_15 . exon 617571 619193 . + . ID=Physo131376.2;Parent=Physo131376;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 619246 620411 . - . ID=Physo131377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150148;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 619246 620411 . - . ID=Physo131377;Parent=Physo131377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 619246 620053 . - 0 ID=Physo131377;Parent=Physo131377;rank=2 scaffold_15 . exon 619246 620053 . - . ID=Physo131377.2;Parent=Physo131377;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 620098 620411 . - 0 ID=Physo131377;Parent=Physo131377;rank=1 scaffold_15 . exon 620098 620411 . - . ID=Physo131377.1;Parent=Physo131377;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 621982 624472 . + . ID=Physo131378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150149;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 621982 624472 . + . ID=Physo131378;Parent=Physo131378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 621982 624418 . + 0 ID=Physo131378;Parent=Physo131378;rank=1 scaffold_15 . exon 621982 624418 . + . ID=Physo131378.1;Parent=Physo131378;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 624459 624472 . + 0 ID=Physo131378;Parent=Physo131378;rank=2 scaffold_15 . biological_region 626926 626929 0.999 + . logic_name=eponine scaffold_15 . biological_region 627033 627035 0.999 + . logic_name=eponine scaffold_15 . biological_region 628686 628686 0.999 + . logic_name=eponine scaffold_15 . biological_region 628764 628769 0.999 + . logic_name=eponine scaffold_15 . biological_region 628793 628795 0.999 + . logic_name=eponine scaffold_15 . repeat_region 631650 631891 . ? . description=trf scaffold_15 ensembl protein_coding_gene 628575 630427 . + . ID=Physo108547;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150016;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 628575 630427 . + . ID=Physo108547;Parent=Physo108547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 628575 630419 . + 0 ID=Physo108547;Parent=Physo108547;rank=1 scaffold_15 . exon 628575 630427 . + . ID=Physo108547.1;Parent=Physo108547;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . exon 624459 624472 . + . ID=Physo131378.2;Parent=Physo131378;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 624810 627821 . - . ID=Physo131379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150150;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 624810 627821 . - . ID=Physo131379;Parent=Physo131379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 624810 624838 . - 0 ID=Physo131379;Parent=Physo131379;rank=4 scaffold_15 . exon 624810 624838 . - . ID=Physo131379.4;Parent=Physo131379;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 624885 624970 . - 0 ID=Physo131379;Parent=Physo131379;rank=3 scaffold_15 . exon 624885 624970 . - . ID=Physo131379.3;Parent=Physo131379;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 625295 625362 . - 0 ID=Physo131379;Parent=Physo131379;rank=2 scaffold_15 . exon 625295 625362 . - . ID=Physo131379.2;Parent=Physo131379;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_15 . CDS 625806 627821 . - 0 ID=Physo131379;Parent=Physo131379;rank=1 scaffold_15 . exon 625806 627821 . - . ID=Physo131379.1;Parent=Physo131379;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 631857 633620 . - . ID=Physo131381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150152;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 631857 633620 . - . ID=Physo131381;Parent=Physo131381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 631857 633325 . - 0 ID=Physo131381;Parent=Physo131381;rank=2 scaffold_15 . exon 631857 633325 . - . ID=Physo131381.2;Parent=Physo131381;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 633575 633620 . - 0 ID=Physo131381;Parent=Physo131381;rank=1 scaffold_15 . exon 633575 633620 . - . ID=Physo131381.1;Parent=Physo131381;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 635744 636625 . + . ID=Physo113539;biotype=protein_coding;external_name=estExt_Genewise1.C_150061;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 635744 636625 . + . ID=Physo113539;Parent=Physo113539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 635744 636625 . + . ID=Physo113539.1;Parent=Physo113539;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 635789 636562 . + 0 ID=Physo113539;Parent=Physo113539;rank=1 scaffold_15 ensembl protein_coding_gene 637016 637870 . + . ID=Physo131384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150155;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 637016 637870 . + . ID=Physo131384;Parent=Physo131384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 637016 637870 . + 0 ID=Physo131384;Parent=Physo131384;rank=1 scaffold_15 . exon 637016 637870 . + . ID=Physo131384.1;Parent=Physo131384;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 638072 642043 . - . ID=Physo131385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150156;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 638072 642043 . - . ID=Physo131385;Parent=Physo131385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 638072 642043 . - 0 ID=Physo131385;Parent=Physo131385;rank=1 scaffold_15 . exon 638072 642043 . - . ID=Physo131385.1;Parent=Physo131385;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 642301 645168 . - . ID=Physo156270;biotype=protein_coding;external_name=C_scaffold_15000040;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 642301 645168 . - . ID=Physo156270;Parent=Physo156270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 642301 642891 . - 0 ID=Physo156270;Parent=Physo156270;rank=5 scaffold_15 . exon 642301 642891 . - . ID=Physo156270.5;Parent=Physo156270;constitutive=1;rank=5 scaffold_15 . CDS 643021 643679 . - 0 ID=Physo156270;Parent=Physo156270;rank=4 scaffold_15 . exon 643021 643679 . - . ID=Physo156270.4;Parent=Physo156270;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 643848 644107 . - 0 ID=Physo156270;Parent=Physo156270;rank=3 scaffold_15 . exon 643848 644107 . - . ID=Physo156270.3;Parent=Physo156270;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 644162 644955 . - 0 ID=Physo156270;Parent=Physo156270;rank=2 scaffold_15 . CDS 645073 645168 . - 0 ID=Physo156270;Parent=Physo156270;rank=1 scaffold_15 . biological_region 645412 645416 0.999 - . logic_name=eponine scaffold_15 . biological_region 646317 646317 0.999 - . logic_name=eponine scaffold_15 . biological_region 646338 646341 0.999 - . logic_name=eponine scaffold_15 . biological_region 646534 646536 0.999 - . logic_name=eponine scaffold_15 . biological_region 646981 646985 0.999 - . logic_name=eponine scaffold_15 . biological_region 646997 647001 0.999 - . logic_name=eponine scaffold_15 . biological_region 647010 647014 0.999 - . logic_name=eponine scaffold_15 . biological_region 648414 648419 0.999 + . logic_name=eponine scaffold_15 . biological_region 648482 648487 0.999 - . logic_name=eponine scaffold_15 . biological_region 648848 648850 0.999 - . logic_name=eponine scaffold_15 . biological_region 649020 649021 0.999 + . logic_name=eponine scaffold_15 . repeat_region 649081 649143 . ? . description=dust scaffold_15 . repeat_region 649188 649216 . ? . description=trf scaffold_15 . repeat_region 649264 649319 . ? . description=trf scaffold_15 . biological_region 649307 649312 0.999 + . logic_name=eponine scaffold_15 . biological_region 649333 649335 0.999 + . logic_name=eponine scaffold_15 . biological_region 649431 649431 0.999 - . logic_name=eponine scaffold_15 . biological_region 649456 649460 0.999 - . logic_name=eponine scaffold_15 . biological_region 649807 649808 0.999 + . logic_name=eponine scaffold_15 . biological_region 650610 650611 0.999 + . logic_name=eponine scaffold_15 . biological_region 650637 650639 0.999 - . logic_name=eponine scaffold_15 . biological_region 650694 650697 0.999 + . logic_name=eponine scaffold_15 . biological_region 650795 650796 0.999 - . logic_name=eponine scaffold_15 . repeat_region 653158 653165 . ? . description=dust scaffold_15 ensembl protein_coding_gene 650562 652292 . + . ID=Physo113542;biotype=protein_coding;external_name=estExt_Genewise1.C_150064;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 650562 652292 . + . ID=Physo113542;Parent=Physo113542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 650562 650930 . + . ID=Physo113542.1;Parent=Physo113542;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_15 . CDS 650629 650930 . + 0 ID=Physo113542;Parent=Physo113542;rank=1 scaffold_15 . CDS 651019 651145 . + 0 ID=Physo113542;Parent=Physo113542;rank=2 scaffold_15 . exon 651019 651145 . + . ID=Physo113542.2;Parent=Physo113542;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 651223 651432 . + 0 ID=Physo113542;Parent=Physo113542;rank=3 scaffold_15 . exon 651223 651432 . + . ID=Physo113542.3;Parent=Physo113542;constitutive=1;rank=3 scaffold_15 . CDS 651552 651844 . + 0 ID=Physo113542;Parent=Physo113542;rank=4 scaffold_15 . exon 651552 651844 . + . ID=Physo113542.4;Parent=Physo113542;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_15 . CDS 651930 652106 . + 0 ID=Physo113542;Parent=Physo113542;rank=5 scaffold_15 . exon 651930 652106 . + . ID=Physo113542.5;Parent=Physo113542;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_15 . CDS 652181 652292 . + 0 ID=Physo113542;Parent=Physo113542;rank=6 scaffold_15 . exon 652181 652292 . + . ID=Physo113542.6;Parent=Physo113542;constitutive=1;ensembl_phase=2;rank=6 scaffold_15 ensembl protein_coding_gene 648939 650243 . + . ID=Physo131388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150159;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 648939 650243 . + . ID=Physo131388;Parent=Physo131388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 648939 650243 . + 0 ID=Physo131388;Parent=Physo131388;rank=1 scaffold_15 . exon 648939 650243 . + . ID=Physo131388.1;Parent=Physo131388;constitutive=1;rank=1 scaffold_15 . exon 644162 644955 . - . ID=Physo156270.2;Parent=Physo156270;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_15 . exon 645073 645168 . - . ID=Physo156270.1;Parent=Physo156270;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 645552 646120 . + . ID=Physo156271;biotype=protein_coding;external_name=C_scaffold_15000041;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 645552 646120 . + . ID=Physo156271;Parent=Physo156271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 645552 645641 . + 0 ID=Physo156271;Parent=Physo156271;rank=1 scaffold_15 . exon 645552 645641 . + . ID=Physo156271.1;Parent=Physo156271;constitutive=1;rank=1 scaffold_15 . CDS 645767 645994 . + 0 ID=Physo156271;Parent=Physo156271;rank=2 scaffold_15 . exon 645767 645994 . + . ID=Physo156271.2;Parent=Physo156271;constitutive=1;rank=2 scaffold_15 . CDS 646031 646120 . + 0 ID=Physo156271;Parent=Physo156271;rank=3 scaffold_15 . exon 646031 646120 . + . ID=Physo156271.3;Parent=Physo156271;constitutive=1;rank=3 scaffold_15 ensembl protein_coding_gene 646270 647169 . - . ID=Physo156272;biotype=protein_coding;external_name=C_scaffold_15000042;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 646270 647169 . - . ID=Physo156272;Parent=Physo156272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 646270 646538 . - 0 ID=Physo156272;Parent=Physo156272;rank=3 scaffold_15 . exon 646270 646538 . - . ID=Physo156272.3;Parent=Physo156272;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 646581 646872 . - 0 ID=Physo156272;Parent=Physo156272;rank=2 scaffold_15 . exon 646581 646872 . - . ID=Physo156272.2;Parent=Physo156272;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 646948 647169 . - 0 ID=Physo156272;Parent=Physo156272;rank=1 scaffold_15 . exon 646948 647169 . - . ID=Physo156272.1;Parent=Physo156272;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 654885 656095 . + . ID=Physo131390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150161;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 654885 656095 . + . ID=Physo131390;Parent=Physo131390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 654885 654999 . + 0 ID=Physo131390;Parent=Physo131390;rank=1 scaffold_15 . exon 654885 654999 . + . ID=Physo131390.1;Parent=Physo131390;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 655022 655215 . + 0 ID=Physo131390;Parent=Physo131390;rank=2 scaffold_15 . exon 655022 655215 . + . ID=Physo131390.2;Parent=Physo131390;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 655303 656037 . + 0 ID=Physo131390;Parent=Physo131390;rank=3 scaffold_15 . exon 655303 656095 . + . ID=Physo131390.3;Parent=Physo131390;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_15 ensembl protein_coding_gene 656362 657182 . + . ID=Physo131391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150162;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 656362 657182 . + . ID=Physo131391;Parent=Physo131391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 656362 656425 . + 0 ID=Physo131391;Parent=Physo131391;rank=1 scaffold_15 . exon 656362 656425 . + . ID=Physo131391.1;Parent=Physo131391;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 656491 656690 . + 0 ID=Physo131391;Parent=Physo131391;rank=2 scaffold_15 . exon 656491 656690 . + . ID=Physo131391.2;Parent=Physo131391;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 656788 657068 . + 0 ID=Physo131391;Parent=Physo131391;rank=3 scaffold_15 . exon 656788 657068 . + . ID=Physo131391.3;Parent=Physo131391;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . CDS 657143 657182 . + 0 ID=Physo131391;Parent=Physo131391;rank=4 scaffold_15 . exon 657143 657182 . + . ID=Physo131391.4;Parent=Physo131391;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 ensembl protein_coding_gene 657962 658930 . + . ID=Physo131392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150163;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 657962 658930 . + . ID=Physo131392;Parent=Physo131392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 657962 658121 . + 0 ID=Physo131392;Parent=Physo131392;rank=1 scaffold_15 . exon 657962 658121 . + . ID=Physo131392.1;Parent=Physo131392;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 658190 658239 . + 0 ID=Physo131392;Parent=Physo131392;rank=2 scaffold_15 . exon 658190 658239 . + . ID=Physo131392.2;Parent=Physo131392;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 658310 658399 . + 0 ID=Physo131392;Parent=Physo131392;rank=3 scaffold_15 . exon 658310 658399 . + . ID=Physo131392.3;Parent=Physo131392;constitutive=1;rank=3 scaffold_15 . CDS 658466 658606 . + 0 ID=Physo131392;Parent=Physo131392;rank=4 scaffold_15 . exon 658466 658606 . + . ID=Physo131392.4;Parent=Physo131392;constitutive=1;rank=4 scaffold_15 . CDS 658685 658930 . + 0 ID=Physo131392;Parent=Physo131392;rank=5 scaffold_15 . exon 658685 658930 . + . ID=Physo131392.5;Parent=Physo131392;constitutive=1;rank=5 scaffold_15 ensembl protein_coding_gene 659324 660252 . + . ID=Physo131393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150164;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 659324 660252 . + . ID=Physo131393;Parent=Physo131393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 659324 659961 . + 0 ID=Physo131393;Parent=Physo131393;rank=1 scaffold_15 . exon 659324 659961 . + . ID=Physo131393.1;Parent=Physo131393;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 660015 660252 . + 0 ID=Physo131393;Parent=Physo131393;rank=2 scaffold_15 . exon 660015 660252 . + . ID=Physo131393.2;Parent=Physo131393;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 ensembl protein_coding_gene 661195 661862 . + . ID=Physo131394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150165;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 661195 661862 . + . ID=Physo131394;Parent=Physo131394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 661195 661202 . + 0 ID=Physo131394;Parent=Physo131394;rank=1 scaffold_15 . exon 661195 661202 . + . ID=Physo131394.1;Parent=Physo131394;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 . CDS 661515 661626 . + 0 ID=Physo131394;Parent=Physo131394;rank=2 scaffold_15 . exon 661515 661626 . + . ID=Physo131394.2;Parent=Physo131394;constitutive=1;ensembl_phase=2;rank=2 scaffold_15 . CDS 661646 661785 . + 0 ID=Physo131394;Parent=Physo131394;rank=3 scaffold_15 . exon 661646 661785 . + . ID=Physo131394.3;Parent=Physo131394;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . CDS 661805 661862 . + 0 ID=Physo131394;Parent=Physo131394;rank=4 scaffold_15 . exon 661805 661862 . + . ID=Physo131394.4;Parent=Physo131394;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 ensembl protein_coding_gene 662849 663896 . - . ID=Physo131395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150166;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 662849 663896 . - . ID=Physo131395;Parent=Physo131395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 662849 663094 . - 0 ID=Physo131395;Parent=Physo131395;rank=5 scaffold_15 . exon 662849 663094 . - . ID=Physo131395.5;Parent=Physo131395;constitutive=1;rank=5 scaffold_15 . CDS 663173 663313 . - 0 ID=Physo131395;Parent=Physo131395;rank=4 scaffold_15 . exon 663173 663313 . - . ID=Physo131395.4;Parent=Physo131395;constitutive=1;rank=4 scaffold_15 . CDS 663379 663468 . - 0 ID=Physo131395;Parent=Physo131395;rank=3 scaffold_15 . exon 663379 663468 . - . ID=Physo131395.3;Parent=Physo131395;constitutive=1;rank=3 scaffold_15 . CDS 663540 663589 . - 0 ID=Physo131395;Parent=Physo131395;rank=2 scaffold_15 . exon 663540 663589 . - . ID=Physo131395.2;Parent=Physo131395;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 663665 663896 . - 0 ID=Physo131395;Parent=Physo131395;rank=1 scaffold_15 . exon 663665 663896 . - . ID=Physo131395.1;Parent=Physo131395;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . biological_region 664412 664419 0.999 - . logic_name=eponine scaffold_15 . biological_region 664648 664651 0.999 - . logic_name=eponine scaffold_15 . repeat_region 665677 665691 . ? . description=dust scaffold_15 . repeat_region 669243 669250 . ? . description=dust scaffold_15 . repeat_region 669580 669632 . ? . description=trf scaffold_15 . repeat_region 671050 671110 . ? . description=trf scaffold_15 . repeat_region 671302 671326 . ? . description=trf scaffold_15 . biological_region 671605 671609 0.999 + . logic_name=eponine scaffold_15 . repeat_region 671617 671647 . ? . description=trf scaffold_15 . biological_region 671628 671633 0.999 - . logic_name=eponine scaffold_15 . repeat_region 673651 673670 . ? . description=trf scaffold_15 ensembl protein_coding_gene 664220 665073 . - . ID=Physo113551;biotype=protein_coding;external_name=estExt_Genewise1.C_150073;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 664220 665073 . - . ID=Physo113551;Parent=Physo113551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 664220 664387 . - . ID=Physo113551.3;Parent=Physo113551;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_15 . CDS 664221 664387 . - 0 ID=Physo113551;Parent=Physo113551;rank=3 scaffold_15 . CDS 664462 664710 . - 0 ID=Physo113551;Parent=Physo113551;rank=2 scaffold_15 . exon 664462 664710 . - . ID=Physo113551.2;Parent=Physo113551;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 664790 665072 . - 0 ID=Physo113551;Parent=Physo113551;rank=1 scaffold_15 . exon 664790 665073 . - . ID=Physo113551.1;Parent=Physo113551;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_15 ensembl protein_coding_gene 666725 667720 . - . ID=Physo113556;biotype=protein_coding;external_name=estExt_Genewise1.C_150078;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 666725 667720 . - . ID=Physo113556;Parent=Physo113556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 666725 667720 . - 0 ID=Physo113556;Parent=Physo113556;rank=1 scaffold_15 . exon 666725 667720 . - . ID=Physo113556.1;Parent=Physo113556;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 671166 674774 . + . ID=Physo113565;biotype=protein_coding;external_name=estExt_Genewise1.C_150087;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 671166 674774 . + . ID=Physo113565;Parent=Physo113565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 671166 671237 . + . ID=Physo113565.1;Parent=Physo113565;constitutive=1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 671184 671237 . + 0 ID=Physo113565;Parent=Physo113565;rank=1 scaffold_15 . CDS 673813 674679 . + 0 ID=Physo113565;Parent=Physo113565;rank=2 scaffold_15 . exon 673813 674774 . + . ID=Physo113565.2;Parent=Physo113565;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_15 ensembl protein_coding_gene 679098 680159 . - . ID=Physo131400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150171;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 679098 680159 . - . ID=Physo131400;Parent=Physo131400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 679098 680159 . - 0 ID=Physo131400;Parent=Physo131400;rank=1 scaffold_15 . exon 679098 680159 . - . ID=Physo131400.1;Parent=Physo131400;constitutive=1;rank=1 scaffold_15 . biological_region 687424 687426 0.999 + . logic_name=eponine scaffold_15 . biological_region 687508 687511 0.999 - . logic_name=eponine scaffold_15 . biological_region 687524 687527 0.999 - . logic_name=eponine scaffold_15 . biological_region 687783 687784 0.999 - . logic_name=eponine scaffold_15 . biological_region 687913 687916 0.999 + . logic_name=eponine scaffold_15 . biological_region 687926 687933 0.999 - . logic_name=eponine scaffold_15 . biological_region 687964 687969 0.999 + . logic_name=eponine scaffold_15 . biological_region 687984 687985 0.999 + . logic_name=eponine scaffold_15 . biological_region 688009 688021 0.999 + . logic_name=eponine scaffold_15 . biological_region 688073 688080 0.999 + . logic_name=eponine scaffold_15 . biological_region 688172 688174 0.999 - . logic_name=eponine scaffold_15 . biological_region 688210 688210 0.999 - . logic_name=eponine scaffold_15 . biological_region 688252 688255 0.999 - . logic_name=eponine scaffold_15 . biological_region 688284 688287 0.999 + . logic_name=eponine scaffold_15 . biological_region 688350 688352 0.999 - . logic_name=eponine scaffold_15 . biological_region 688928 688933 0.999 + . logic_name=eponine scaffold_15 . biological_region 689012 689013 0.999 + . logic_name=eponine scaffold_15 . biological_region 690455 690457 0.999 - . logic_name=eponine scaffold_15 . repeat_region 692842 692857 . ? . description=dust scaffold_15 ensembl protein_coding_gene 687201 689757 . + . ID=Physo131401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150172;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 687201 689757 . + . ID=Physo131401;Parent=Physo131401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 687201 689678 . + 0 ID=Physo131401;Parent=Physo131401;rank=1 scaffold_15 . exon 687201 689757 . + . ID=Physo131401.1;Parent=Physo131401;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . repeat_region 694592 694626 . ? . description=trf scaffold_15 . repeat_region 695571 695590 . ? . description=trf scaffold_15 ensembl protein_coding_gene 693851 694516 . + . ID=Physo131402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150173;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 693851 694516 . + . ID=Physo131402;Parent=Physo131402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 693851 694516 . + 0 ID=Physo131402;Parent=Physo131402;rank=1 scaffold_15 . exon 693851 694516 . + . ID=Physo131402.1;Parent=Physo131402;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 702829 704569 . - . ID=Physo131403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150174;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 702829 704569 . - . ID=Physo131403;Parent=Physo131403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 702829 702870 . - 0 ID=Physo131403;Parent=Physo131403;rank=2 scaffold_15 . exon 702829 702870 . - . ID=Physo131403.2;Parent=Physo131403;constitutive=1;rank=2 scaffold_15 . CDS 703082 704569 . - 0 ID=Physo131403;Parent=Physo131403;rank=1 scaffold_15 . exon 703082 704569 . - . ID=Physo131403.1;Parent=Physo131403;constitutive=1;rank=1 scaffold_15 . biological_region 704597 704601 0.999 + . logic_name=eponine scaffold_15 . biological_region 706306 706309 0.999 - . logic_name=eponine scaffold_15 . biological_region 710244 710248 0.999 + . logic_name=eponine scaffold_15 . biological_region 711611 711613 0.999 + . logic_name=eponine scaffold_15 . biological_region 711672 711677 0.999 - . logic_name=eponine scaffold_15 . biological_region 711730 711734 0.999 - . logic_name=eponine scaffold_15 . repeat_region 712329 712336 . ? . description=dust scaffold_15 ensembl protein_coding_gene 711480 712434 . + . ID=Physo108552;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150021;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 711480 712434 . + . ID=Physo108552;Parent=Physo108552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 711480 712007 . + . ID=Physo108552.1;Parent=Physo108552;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_15 . CDS 711517 712007 . + 0 ID=Physo108552;Parent=Physo108552;rank=1 scaffold_15 . CDS 712088 712253 . + 0 ID=Physo108552;Parent=Physo108552;rank=2 scaffold_15 . exon 712088 712434 . + . ID=Physo108552.2;Parent=Physo108552;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_15 ensembl protein_coding_gene 705860 706454 . + . ID=Physo131405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150176;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 705860 706454 . + . ID=Physo131405;Parent=Physo131405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 705860 706103 . + . ID=Physo131405.1;Parent=Physo131405;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 705863 706103 . + 0 ID=Physo131405;Parent=Physo131405;rank=1 scaffold_15 . CDS 706170 706381 . + 0 ID=Physo131405;Parent=Physo131405;rank=2 scaffold_15 . exon 706170 706454 . + . ID=Physo131405.2;Parent=Physo131405;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 710033 711399 . + . ID=Physo131406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150177;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 710033 711399 . + . ID=Physo131406;Parent=Physo131406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 710033 711399 . + . ID=Physo131406.1;Parent=Physo131406;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 710035 711315 . + 0 ID=Physo131406;Parent=Physo131406;rank=1 scaffold_15 ensembl protein_coding_gene 712442 716180 . - . ID=Physo131408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150179;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 712442 716180 . - . ID=Physo131408;Parent=Physo131408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 712442 716148 . - . ID=Physo131408.2;Parent=Physo131408;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_15 . CDS 712540 716148 . - 0 ID=Physo131408;Parent=Physo131408;rank=2 scaffold_15 . CDS 716169 716180 . - 0 ID=Physo131408;Parent=Physo131408;rank=1 scaffold_15 ensembl protein_coding_gene 705124 705423 . + . ID=Physo156275;biotype=protein_coding;external_name=C_scaffold_15000045;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 705124 705423 . + . ID=Physo156275;Parent=Physo156275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 705124 705423 . + 0 ID=Physo156275;Parent=Physo156275;rank=1 scaffold_15 . exon 705124 705423 . + . ID=Physo156275.1;Parent=Physo156275;constitutive=1;rank=1 scaffold_15 . repeat_region 714962 714981 . ? . description=trf scaffold_15 . repeat_region 716083 716109 . ? . description=trf scaffold_15 . repeat_region 722998 723123 . ? . description=trf scaffold_15 . repeat_region 723076 723130 . ? . description=trf scaffold_15 . repeat_region 723123 723184 . ? . description=trf scaffold_15 . exon 716169 716180 . - . ID=Physo131408.1;Parent=Physo131408;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 717856 718344 . - . ID=Physo131409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150180;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 717856 718344 . - . ID=Physo131409;Parent=Physo131409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 717856 718344 . - 0 ID=Physo131409;Parent=Physo131409;rank=1 scaffold_15 . exon 717856 718344 . - . ID=Physo131409.1;Parent=Physo131409;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 722557 723513 . - . ID=Physo131410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150181;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 722557 723513 . - . ID=Physo131410;Parent=Physo131410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 722557 723513 . - 0 ID=Physo131410;Parent=Physo131410;rank=1 scaffold_15 . exon 722557 723513 . - . ID=Physo131410.1;Parent=Physo131410;constitutive=1;rank=1 scaffold_15 . repeat_region 724461 729320 . ? . description=dust scaffold_15 . biological_region 729466 729466 0.999 + . logic_name=eponine scaffold_15 . repeat_region 730926 731824 . ? . description=dust scaffold_15 ensembl protein_coding_gene 732013 732501 . - . ID=Physo131411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150182;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 732013 732501 . - . ID=Physo131411;Parent=Physo131411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 732013 732501 . - 0 ID=Physo131411;Parent=Physo131411;rank=1 scaffold_15 . exon 732013 732501 . - . ID=Physo131411.1;Parent=Physo131411;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 733219 733999 . + . ID=Physo108553;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150022;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 733219 733999 . + . ID=Physo108553;Parent=Physo108553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 733219 733482 . + 0 ID=Physo108553;Parent=Physo108553;rank=1 scaffold_15 . exon 733219 733482 . + . ID=Physo108553.1;Parent=Physo108553;constitutive=1;rank=1 scaffold_15 . CDS 733522 733644 . + 0 ID=Physo108553;Parent=Physo108553;rank=2 scaffold_15 . exon 733522 733644 . + . ID=Physo108553.2;Parent=Physo108553;constitutive=1;rank=2 scaffold_15 . CDS 733678 733839 . + 0 ID=Physo108553;Parent=Physo108553;rank=3 scaffold_15 . exon 733678 733839 . + . ID=Physo108553.3;Parent=Physo108553;constitutive=1;rank=3 scaffold_15 . CDS 733870 733998 . + 0 ID=Physo108553;Parent=Physo108553;rank=4 scaffold_15 . exon 733870 733999 . + . ID=Physo108553.4;Parent=Physo108553;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_15 ensembl protein_coding_gene 737537 738599 . + . ID=Physo108554;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150023;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 737537 738599 . + . ID=Physo108554;Parent=Physo108554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 737537 737800 . + 0 ID=Physo108554;Parent=Physo108554;rank=1 scaffold_15 . exon 737537 737800 . + . ID=Physo108554.1;Parent=Physo108554;constitutive=1;rank=1 scaffold_15 . CDS 737840 738598 . + 0 ID=Physo108554;Parent=Physo108554;rank=2 scaffold_15 . exon 737840 738599 . + . ID=Physo108554.2;Parent=Physo108554;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_15 ensembl protein_coding_gene 736331 736819 . - . ID=Physo131413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150184;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 736331 736819 . - . ID=Physo131413;Parent=Physo131413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 736331 736819 . - 0 ID=Physo131413;Parent=Physo131413;rank=1 scaffold_15 . exon 736331 736819 . - . ID=Physo131413.1;Parent=Physo131413;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 738914 739778 . - . ID=Physo131415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150186;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 738914 739778 . - . ID=Physo131415;Parent=Physo131415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 738914 739371 . - 0 ID=Physo131415;Parent=Physo131415;rank=2 scaffold_15 . exon 738914 739371 . - . ID=Physo131415.2;Parent=Physo131415;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 739409 739778 . - 0 ID=Physo131415;Parent=Physo131415;rank=1 scaffold_15 . exon 739409 739778 . - . ID=Physo131415.1;Parent=Physo131415;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . repeat_region 743001 753760 . ? . description=dust scaffold_15 . biological_region 753896 753897 0.999 - . logic_name=eponine scaffold_15 . biological_region 753951 753951 0.999 + . logic_name=eponine scaffold_15 . biological_region 754144 754146 0.999 + . logic_name=eponine scaffold_15 . biological_region 754315 754317 0.999 - . logic_name=eponine scaffold_15 . biological_region 756215 756215 0.999 + . logic_name=eponine scaffold_15 . repeat_region 760641 760677 . ? . description=trf scaffold_15 . biological_region 761854 761855 0.999 + . logic_name=eponine scaffold_15 . biological_region 761902 761906 0.999 + . logic_name=eponine scaffold_15 . biological_region 762120 762123 0.999 - . logic_name=eponine scaffold_15 . biological_region 762562 762567 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 756156 757704 . - . ID=Physo131416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150187;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 756156 757704 . - . ID=Physo131416;Parent=Physo131416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 756156 756406 . - 0 ID=Physo131416;Parent=Physo131416;rank=4 scaffold_15 . exon 756156 756406 . - . ID=Physo131416.4;Parent=Physo131416;constitutive=1;ensembl_phase=1;rank=4 scaffold_15 . CDS 756537 756777 . - 0 ID=Physo131416;Parent=Physo131416;rank=3 scaffold_15 . exon 756537 756777 . - . ID=Physo131416.3;Parent=Physo131416;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . CDS 756895 757538 . - 0 ID=Physo131416;Parent=Physo131416;rank=2 scaffold_15 . exon 756895 757538 . - . ID=Physo131416.2;Parent=Physo131416;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 757560 757704 . - 0 ID=Physo131416;Parent=Physo131416;rank=1 scaffold_15 . exon 757560 757704 . - . ID=Physo131416.1;Parent=Physo131416;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 760560 762104 . - . ID=Physo131417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150188;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 760560 762104 . - . ID=Physo131417;Parent=Physo131417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 760560 761136 . - 0 ID=Physo131417;Parent=Physo131417;rank=3 scaffold_15 . exon 760560 761136 . - . ID=Physo131417.3;Parent=Physo131417;constitutive=1;ensembl_phase=2;rank=3 scaffold_15 . CDS 761228 761354 . - 0 ID=Physo131417;Parent=Physo131417;rank=2 scaffold_15 . exon 761228 761354 . - . ID=Physo131417.2;Parent=Physo131417;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_15 . CDS 761405 762104 . - 0 ID=Physo131417;Parent=Physo131417;rank=1 scaffold_15 . exon 761405 762104 . - . ID=Physo131417.1;Parent=Physo131417;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . repeat_region 763442 763453 . ? . description=dust scaffold_15 ensembl protein_coding_gene 767883 768458 . + . ID=Physo108555;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150024;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 767883 768458 . + . ID=Physo108555;Parent=Physo108555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 767883 767936 . + . ID=Physo108555.1;Parent=Physo108555;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_15 . CDS 767905 767936 . + 0 ID=Physo108555;Parent=Physo108555;rank=1 scaffold_15 . CDS 768032 768326 . + 0 ID=Physo108555;Parent=Physo108555;rank=2 scaffold_15 . exon 768032 768458 . + . ID=Physo108555.2;Parent=Physo108555;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_15 ensembl protein_coding_gene 772510 773905 . - . ID=Physo108556;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150025;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 772510 773905 . - . ID=Physo108556;Parent=Physo108556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 772510 773905 . - . ID=Physo108556.1;Parent=Physo108556;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . CDS 772592 773905 . - 0 ID=Physo108556;Parent=Physo108556;rank=1 scaffold_15 ensembl protein_coding_gene 764188 765219 . - . ID=Physo131418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150189;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 764188 765219 . - . ID=Physo131418;Parent=Physo131418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 764188 765219 . - 0 ID=Physo131418;Parent=Physo131418;rank=1 scaffold_15 . exon 764188 765219 . - . ID=Physo131418.1;Parent=Physo131418;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 766458 767298 . + . ID=Physo131419;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150190;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 766458 767298 . + . ID=Physo131419;Parent=Physo131419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 766458 766472 . + 0 ID=Physo131419;Parent=Physo131419;rank=1 scaffold_15 . exon 766458 766472 . + . ID=Physo131419.1;Parent=Physo131419;constitutive=1;rank=1 scaffold_15 . CDS 766538 766981 . + 0 ID=Physo131419;Parent=Physo131419;rank=2 scaffold_15 . exon 766538 766981 . + . ID=Physo131419.2;Parent=Physo131419;constitutive=1;rank=2 scaffold_15 . CDS 767077 767298 . + 0 ID=Physo131419;Parent=Physo131419;rank=3 scaffold_15 . exon 767077 767298 . + . ID=Physo131419.3;Parent=Physo131419;constitutive=1;rank=3 scaffold_15 ensembl protein_coding_gene 768474 770076 . - . ID=Physo131421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150192;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 768474 770076 . - . ID=Physo131421;Parent=Physo131421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 768474 768788 . - 0 ID=Physo131421;Parent=Physo131421;rank=5 scaffold_15 . exon 768474 768788 . - . ID=Physo131421.5;Parent=Physo131421;constitutive=1;rank=5 scaffold_15 . CDS 768862 769555 . - 0 ID=Physo131421;Parent=Physo131421;rank=4 scaffold_15 . exon 768862 769555 . - . ID=Physo131421.4;Parent=Physo131421;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 769616 769663 . - 0 ID=Physo131421;Parent=Physo131421;rank=3 scaffold_15 . exon 769616 769663 . - . ID=Physo131421.3;Parent=Physo131421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_15 . CDS 769745 769855 . - 0 ID=Physo131421;Parent=Physo131421;rank=2 scaffold_15 . exon 769745 769855 . - . ID=Physo131421.2;Parent=Physo131421;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_15 . CDS 769934 770076 . - 0 ID=Physo131421;Parent=Physo131421;rank=1 scaffold_15 . exon 769934 770076 . - . ID=Physo131421.1;Parent=Physo131421;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_15 ensembl protein_coding_gene 770176 771096 . + . ID=Physo131422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150193;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 770176 771096 . + . ID=Physo131422;Parent=Physo131422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 770176 770725 . + 0 ID=Physo131422;Parent=Physo131422;rank=1 scaffold_15 . exon 770176 770725 . + . ID=Physo131422.1;Parent=Physo131422;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 770804 771096 . + 0 ID=Physo131422;Parent=Physo131422;rank=2 scaffold_15 . exon 770804 771096 . + . ID=Physo131422.2;Parent=Physo131422;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 ensembl protein_coding_gene 771860 772426 . + . ID=Physo131423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150194;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 771860 772426 . + . ID=Physo131423;Parent=Physo131423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 771860 772426 . + 0 ID=Physo131423;Parent=Physo131423;rank=1 scaffold_15 . exon 771860 772426 . + . ID=Physo131423.1;Parent=Physo131423;constitutive=1;rank=1 scaffold_15 . biological_region 772776 772776 0.999 + . logic_name=eponine scaffold_15 . biological_region 772858 772858 0.999 + . logic_name=eponine scaffold_15 . repeat_region 773912 773945 . ? . description=trf scaffold_15 . biological_region 774771 774773 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 780043 785317 . - . ID=Physo131426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150197;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 780043 785317 . - . ID=Physo131426;Parent=Physo131426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 780043 780743 . - 0 ID=Physo131426;Parent=Physo131426;rank=11 scaffold_15 . exon 780043 780743 . - . ID=Physo131426.11;Parent=Physo131426;constitutive=1;ensembl_phase=1;rank=11 scaffold_15 . CDS 780841 780900 . - 0 ID=Physo131426;Parent=Physo131426;rank=10 scaffold_15 . exon 780841 780900 . - . ID=Physo131426.10;Parent=Physo131426;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_15 . CDS 781053 781297 . - 0 ID=Physo131426;Parent=Physo131426;rank=9 scaffold_15 . exon 781053 781297 . - . ID=Physo131426.9;Parent=Physo131426;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_15 . CDS 781328 781682 . - 0 ID=Physo131426;Parent=Physo131426;rank=8 scaffold_15 . exon 781328 781682 . - . ID=Physo131426.8;Parent=Physo131426;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_15 . CDS 781824 781953 . - 0 ID=Physo131426;Parent=Physo131426;rank=7 scaffold_15 . exon 781824 781953 . - . ID=Physo131426.7;Parent=Physo131426;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_15 . CDS 782027 782376 . - 0 ID=Physo131426;Parent=Physo131426;rank=6 scaffold_15 . exon 782027 782376 . - . ID=Physo131426.6;Parent=Physo131426;constitutive=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 782993 783456 . - 0 ID=Physo131426;Parent=Physo131426;rank=5 scaffold_15 . CDS 783783 784475 . - 0 ID=Physo131426;Parent=Physo131426;rank=4 scaffold_15 . CDS 784536 784723 . - 0 ID=Physo131426;Parent=Physo131426;rank=3 scaffold_15 . CDS 784803 785213 . - 0 ID=Physo131426;Parent=Physo131426;rank=2 scaffold_15 . CDS 785264 785317 . - 0 ID=Physo131426;Parent=Physo131426;rank=1 scaffold_15 ensembl protein_coding_gene 774495 776826 . - . ID=Physo156281;biotype=protein_coding;external_name=C_scaffold_15000051;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 774495 776826 . - . ID=Physo156281;Parent=Physo156281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 774495 775248 . - 0 ID=Physo156281;Parent=Physo156281;rank=7 scaffold_15 . exon 774495 775248 . - . ID=Physo156281.7;Parent=Physo156281;constitutive=1;ensembl_phase=2;rank=7 scaffold_15 . CDS 775322 775390 . - 0 ID=Physo156281;Parent=Physo156281;rank=6 scaffold_15 . exon 775322 775390 . - . ID=Physo156281.6;Parent=Physo156281;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_15 . CDS 775468 775727 . - 0 ID=Physo156281;Parent=Physo156281;rank=5 scaffold_15 . exon 775468 775727 . - . ID=Physo156281.5;Parent=Physo156281;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_15 . CDS 775905 776175 . - 0 ID=Physo156281;Parent=Physo156281;rank=4 scaffold_15 . exon 775905 776175 . - . ID=Physo156281.4;Parent=Physo156281;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 776249 776400 . - 0 ID=Physo156281;Parent=Physo156281;rank=3 scaffold_15 . exon 776249 776400 . - . ID=Physo156281.3;Parent=Physo156281;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . CDS 776511 776582 . - 0 ID=Physo156281;Parent=Physo156281;rank=2 scaffold_15 . exon 776511 776582 . - . ID=Physo156281.2;Parent=Physo156281;constitutive=1;rank=2 scaffold_15 . CDS 776749 776826 . - 0 ID=Physo156281;Parent=Physo156281;rank=1 scaffold_15 . exon 776749 776826 . - . ID=Physo156281.1;Parent=Physo156281;constitutive=1;rank=1 scaffold_15 . exon 782993 783456 . - . ID=Physo131426.5;Parent=Physo131426;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_15 . exon 783783 784475 . - . ID=Physo131426.4;Parent=Physo131426;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_15 . exon 784536 784723 . - . ID=Physo131426.3;Parent=Physo131426;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_15 . exon 784803 785213 . - . ID=Physo131426.2;Parent=Physo131426;constitutive=1;rank=2 scaffold_15 . exon 785264 785317 . - . ID=Physo131426.1;Parent=Physo131426;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 791798 792787 . + . ID=Physo131427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150198;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 791798 792787 . + . ID=Physo131427;Parent=Physo131427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 791798 792787 . + . ID=Physo131427.1;Parent=Physo131427;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 791799 792755 . + 0 ID=Physo131427;Parent=Physo131427;rank=1 scaffold_15 . repeat_region 792888 792897 . ? . description=dust scaffold_15 . repeat_region 793131 793143 . ? . description=dust scaffold_15 . repeat_region 794833 794892 . ? . description=dust scaffold_15 . biological_region 795014 795018 0.999 + . logic_name=eponine scaffold_15 . biological_region 795061 795065 0.999 + . logic_name=eponine scaffold_15 . biological_region 795423 795425 0.999 - . logic_name=eponine scaffold_15 . repeat_region 796368 796376 . ? . description=dust scaffold_15 . repeat_region 798378 798430 . ? . description=dust scaffold_15 . repeat_region 798407 798430 . ? . description=trf scaffold_15 ensembl protein_coding_gene 798370 799191 . - . ID=Physo108557;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150026;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 798370 799191 . - . ID=Physo108557;Parent=Physo108557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 798370 799191 . - 0 ID=Physo108557;Parent=Physo108557;rank=1 scaffold_15 . exon 798370 799191 . - . ID=Physo108557.1;Parent=Physo108557;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 795217 796859 . - . ID=Physo131428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150199;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 795217 796859 . - . ID=Physo131428;Parent=Physo131428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 795217 795734 . - 0 ID=Physo131428;Parent=Physo131428;rank=6 scaffold_15 . exon 795217 795734 . - . ID=Physo131428.6;Parent=Physo131428;constitutive=1;ensembl_phase=1;rank=6 scaffold_15 . CDS 795814 796139 . - 0 ID=Physo131428;Parent=Physo131428;rank=5 scaffold_15 . exon 795814 796139 . - . ID=Physo131428.5;Parent=Physo131428;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_15 . CDS 796225 796316 . - 0 ID=Physo131428;Parent=Physo131428;rank=4 scaffold_15 . exon 796225 796316 . - . ID=Physo131428.4;Parent=Physo131428;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_15 . CDS 796411 796533 . - 0 ID=Physo131428;Parent=Physo131428;rank=3 scaffold_15 . exon 796411 796533 . - . ID=Physo131428.3;Parent=Physo131428;constitutive=1;rank=3 scaffold_15 . CDS 796613 796641 . - 0 ID=Physo131428;Parent=Physo131428;rank=2 scaffold_15 . exon 796613 796641 . - . ID=Physo131428.2;Parent=Physo131428;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 796709 796859 . - 0 ID=Physo131428;Parent=Physo131428;rank=1 scaffold_15 . exon 796709 796859 . - . ID=Physo131428.1;Parent=Physo131428;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 797025 798235 . - . ID=Physo131429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150200;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 797025 798235 . - . ID=Physo131429;Parent=Physo131429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 797025 797914 . - 0 ID=Physo131429;Parent=Physo131429;rank=3 scaffold_15 . exon 797025 797914 . - . ID=Physo131429.3;Parent=Physo131429;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 798062 798071 . - 0 ID=Physo131429;Parent=Physo131429;rank=2 scaffold_15 . exon 798062 798071 . - . ID=Physo131429.2;Parent=Physo131429;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_15 . CDS 798131 798235 . - 0 ID=Physo131429;Parent=Physo131429;rank=1 scaffold_15 . exon 798131 798235 . - . ID=Physo131429.1;Parent=Physo131429;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 800908 802521 . - . ID=Physo131431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150202;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 800908 802521 . - . ID=Physo131431;Parent=Physo131431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 800908 802521 . - . ID=Physo131431.1;Parent=Physo131431;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . CDS 801013 802521 . - 0 ID=Physo131431;Parent=Physo131431;rank=1 scaffold_15 ensembl protein_coding_gene 808767 810350 . + . ID=Physo108558;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150027;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 808767 810350 . + . ID=Physo108558;Parent=Physo108558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 808767 810350 . + 0 ID=Physo108558;Parent=Physo108558;rank=1 scaffold_15 . exon 808767 810350 . + . ID=Physo108558.1;Parent=Physo108558;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 803367 804911 . - . ID=Physo131432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150203;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 803367 804911 . - . ID=Physo131432;Parent=Physo131432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 803367 804911 . - 0 ID=Physo131432;Parent=Physo131432;rank=1 scaffold_15 . exon 803367 804911 . - . ID=Physo131432.1;Parent=Physo131432;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 805984 807552 . - . ID=Physo131433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150204;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 805984 807552 . - . ID=Physo131433;Parent=Physo131433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 805984 807552 . - 0 ID=Physo131433;Parent=Physo131433;rank=1 scaffold_15 . exon 805984 807552 . - . ID=Physo131433.1;Parent=Physo131433;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 810487 812837 . - . ID=Physo131435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150206;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 810487 812837 . - . ID=Physo131435;Parent=Physo131435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 810487 811098 . - 0 ID=Physo131435;Parent=Physo131435;rank=3 scaffold_15 . exon 810487 811098 . - . ID=Physo131435.3;Parent=Physo131435;constitutive=1;rank=3 scaffold_15 . CDS 811136 812532 . - 0 ID=Physo131435;Parent=Physo131435;rank=2 scaffold_15 . exon 811136 812532 . - . ID=Physo131435.2;Parent=Physo131435;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 812636 812837 . - 0 ID=Physo131435;Parent=Physo131435;rank=1 scaffold_15 . biological_region 814304 814306 0.999 - . logic_name=eponine scaffold_15 . biological_region 818118 818121 0.999 + . logic_name=eponine scaffold_15 . biological_region 819147 819151 0.999 - . logic_name=eponine scaffold_15 . biological_region 819178 819181 0.999 - . logic_name=eponine scaffold_15 . biological_region 819200 819207 0.999 + . logic_name=eponine scaffold_15 . biological_region 819588 819593 0.999 - . logic_name=eponine scaffold_15 . biological_region 820284 820290 0.999 - . logic_name=eponine scaffold_15 . biological_region 820317 820321 0.999 - . logic_name=eponine scaffold_15 . biological_region 820417 820421 0.999 + . logic_name=eponine scaffold_15 . biological_region 820434 820437 0.999 + . logic_name=eponine scaffold_15 . biological_region 820448 820451 0.999 + . logic_name=eponine scaffold_15 . biological_region 820471 820475 0.999 - . logic_name=eponine scaffold_15 . biological_region 820480 820485 0.999 + . logic_name=eponine scaffold_15 . biological_region 820518 820520 0.999 - . logic_name=eponine scaffold_15 . biological_region 820559 820565 0.999 + . logic_name=eponine scaffold_15 . repeat_region 820601 820620 . ? . description=trf scaffold_15 . biological_region 820610 820611 0.999 + . logic_name=eponine scaffold_15 . biological_region 820613 820615 0.999 - . logic_name=eponine scaffold_15 . biological_region 820872 820878 0.999 - . logic_name=eponine scaffold_15 . biological_region 820897 820902 0.999 - . logic_name=eponine scaffold_15 . biological_region 820953 820956 0.999 + . logic_name=eponine scaffold_15 . biological_region 820989 820995 0.999 + . logic_name=eponine scaffold_15 . biological_region 821023 821031 0.999 + . logic_name=eponine scaffold_15 . biological_region 821055 821056 0.999 + . logic_name=eponine scaffold_15 . repeat_region 821069 821116 . ? . description=dust scaffold_15 . biological_region 821148 821153 0.999 - . logic_name=eponine scaffold_15 . repeat_region 821855 821864 . ? . description=dust scaffold_15 . exon 812636 812837 . - . ID=Physo131435.1;Parent=Physo131435;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 817291 818496 . - . ID=Physo131437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150208;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 817291 818496 . - . ID=Physo131437;Parent=Physo131437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 817291 818292 . - 0 ID=Physo131437;Parent=Physo131437;rank=2 scaffold_15 . exon 817291 818292 . - . ID=Physo131437.2;Parent=Physo131437;constitutive=1;rank=2 scaffold_15 . CDS 818368 818496 . - 0 ID=Physo131437;Parent=Physo131437;rank=1 scaffold_15 . exon 818368 818496 . - . ID=Physo131437.1;Parent=Physo131437;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 818762 821101 . - . ID=Physo131438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150209;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 818762 821101 . - . ID=Physo131438;Parent=Physo131438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 818762 821101 . - . ID=Physo131438.1;Parent=Physo131438;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_15 . CDS 818990 821101 . - 0 ID=Physo131438;Parent=Physo131438;rank=1 scaffold_15 ensembl protein_coding_gene 814113 817170 . + . ID=Physo156283;biotype=protein_coding;external_name=C_scaffold_15000053;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 814113 817170 . + . ID=Physo156283;Parent=Physo156283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 814113 814716 . + 0 ID=Physo156283;Parent=Physo156283;rank=1 scaffold_15 . exon 814113 814716 . + . ID=Physo156283.1;Parent=Physo156283;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 814811 815635 . + 0 ID=Physo156283;Parent=Physo156283;rank=2 scaffold_15 . exon 814811 815635 . + . ID=Physo156283.2;Parent=Physo156283;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 815771 816204 . + 0 ID=Physo156283;Parent=Physo156283;rank=3 scaffold_15 . exon 815771 816204 . + . ID=Physo156283.3;Parent=Physo156283;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 816439 817170 . + 0 ID=Physo156283;Parent=Physo156283;rank=4 scaffold_15 . exon 816439 817170 . + . ID=Physo156283.4;Parent=Physo156283;constitutive=1;rank=4 scaffold_15 ensembl protein_coding_gene 824726 825514 . + . ID=Physo131439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150210;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 824726 825514 . + . ID=Physo131439;Parent=Physo131439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 824726 825514 . + 0 ID=Physo131439;Parent=Physo131439;rank=1 scaffold_15 . exon 824726 825514 . + . ID=Physo131439.1;Parent=Physo131439;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 828279 829136 . + . ID=Physo131440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150211;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 828279 829136 . + . ID=Physo131440;Parent=Physo131440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 828279 829136 . + 0 ID=Physo131440;Parent=Physo131440;rank=1 scaffold_15 . exon 828279 829136 . + . ID=Physo131440.1;Parent=Physo131440;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 830377 831792 . - . ID=Physo131441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150212;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 830377 831792 . - . ID=Physo131441;Parent=Physo131441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 830377 830397 . - 0 ID=Physo131441;Parent=Physo131441;rank=4 scaffold_15 . exon 830377 830397 . - . ID=Physo131441.4;Parent=Physo131441;constitutive=1;rank=4 scaffold_15 . CDS 830720 830749 . - 0 ID=Physo131441;Parent=Physo131441;rank=3 scaffold_15 . exon 830720 830749 . - . ID=Physo131441.3;Parent=Physo131441;constitutive=1;rank=3 scaffold_15 . CDS 830941 830955 . - 0 ID=Physo131441;Parent=Physo131441;rank=2 scaffold_15 . exon 830941 830955 . - . ID=Physo131441.2;Parent=Physo131441;constitutive=1;rank=2 scaffold_15 . CDS 831136 831792 . - 0 ID=Physo131441;Parent=Physo131441;rank=1 scaffold_15 . exon 831136 831792 . - . ID=Physo131441.1;Parent=Physo131441;constitutive=1;rank=1 scaffold_15 . biological_region 832449 832450 0.999 - . logic_name=eponine scaffold_15 . repeat_region 832820 832860 . ? . description=dust scaffold_15 . repeat_region 833029 833061 . ? . description=dust scaffold_15 . biological_region 836561 836561 0.999 - . logic_name=eponine scaffold_15 . biological_region 836738 836739 0.999 + . logic_name=eponine scaffold_15 . biological_region 838769 838770 0.999 - . logic_name=eponine scaffold_15 . repeat_region 839833 840183 . ? . description=trf scaffold_15 . repeat_region 840609 840668 . ? . description=dust scaffold_15 . biological_region 840954 840956 0.999 - . logic_name=eponine scaffold_15 . biological_region 840955 840957 0.999 + . logic_name=eponine scaffold_15 . biological_region 841287 841291 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 832381 837281 . + . ID=Physo131442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150213;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 832381 837281 . + . ID=Physo131442;Parent=Physo131442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 832381 832812 . + 0 ID=Physo131442;Parent=Physo131442;rank=1 scaffold_15 . exon 832381 832812 . + . ID=Physo131442.1;Parent=Physo131442;constitutive=1;rank=1 scaffold_15 . CDS 832917 832997 . + 0 ID=Physo131442;Parent=Physo131442;rank=2 scaffold_15 . exon 832917 832997 . + . ID=Physo131442.2;Parent=Physo131442;constitutive=1;rank=2 scaffold_15 . CDS 833066 834850 . + 0 ID=Physo131442;Parent=Physo131442;rank=3 scaffold_15 . exon 833066 834850 . + . ID=Physo131442.3;Parent=Physo131442;constitutive=1;rank=3 scaffold_15 . CDS 834934 836836 . + 0 ID=Physo131442;Parent=Physo131442;rank=4 scaffold_15 . exon 834934 836836 . + . ID=Physo131442.4;Parent=Physo131442;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_15 . CDS 836919 837159 . + 0 ID=Physo131442;Parent=Physo131442;rank=5 scaffold_15 . exon 836919 837159 . + . ID=Physo131442.5;Parent=Physo131442;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_15 . CDS 837230 837281 . + 0 ID=Physo131442;Parent=Physo131442;rank=6 scaffold_15 . exon 837230 837281 . + . ID=Physo131442.6;Parent=Physo131442;constitutive=1;ensembl_phase=2;rank=6 scaffold_15 ensembl protein_coding_gene 837457 841326 . - . ID=Physo131443;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150214;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 837457 841326 . - . ID=Physo131443;Parent=Physo131443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 837457 841326 . - 0 ID=Physo131443;Parent=Physo131443;rank=1 scaffold_15 . exon 837457 841326 . - . ID=Physo131443.1;Parent=Physo131443;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 851642 853145 . - . ID=Physo113633;biotype=protein_coding;external_name=estExt_Genewise1.C_150155;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 851642 853145 . - . ID=Physo113633;Parent=Physo113633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 851642 853145 . - . ID=Physo113633.1;Parent=Physo113633;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 851682 853100 . - 0 ID=Physo113633;Parent=Physo113633;rank=1 scaffold_15 ensembl protein_coding_gene 843966 844877 . + . ID=Physo131444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150215;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 843966 844877 . + . ID=Physo131444;Parent=Physo131444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 843966 844877 . + 0 ID=Physo131444;Parent=Physo131444;rank=1 scaffold_15 . exon 843966 844877 . + . ID=Physo131444.1;Parent=Physo131444;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 850291 851387 . + . ID=Physo131445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150216;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 850291 851387 . + . ID=Physo131445;Parent=Physo131445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 850291 851387 . + . ID=Physo131445.1;Parent=Physo131445;constitutive=1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 850452 851387 . + 0 ID=Physo131445;Parent=Physo131445;rank=1 scaffold_15 . biological_region 852290 852292 0.999 - . logic_name=eponine scaffold_15 . biological_region 852453 852453 0.999 + . logic_name=eponine scaffold_15 . biological_region 852632 852639 0.999 - . logic_name=eponine scaffold_15 . biological_region 852666 852670 0.999 - . logic_name=eponine scaffold_15 . biological_region 852982 852985 0.999 - . logic_name=eponine scaffold_15 . biological_region 853036 853042 0.999 + . logic_name=eponine scaffold_15 . biological_region 853092 853096 0.999 + . logic_name=eponine scaffold_15 . biological_region 853115 853118 0.999 + . logic_name=eponine scaffold_15 . biological_region 853227 853228 0.999 - . logic_name=eponine scaffold_15 . biological_region 853700 853704 0.999 + . logic_name=eponine scaffold_15 . biological_region 854135 854141 0.999 - . logic_name=eponine scaffold_15 . biological_region 854156 854158 0.999 + . logic_name=eponine scaffold_15 . biological_region 854450 854452 0.999 - . logic_name=eponine scaffold_15 . biological_region 854795 854801 0.999 + . logic_name=eponine scaffold_15 . biological_region 854867 854871 0.999 - . logic_name=eponine scaffold_15 . biological_region 856491 856491 0.999 + . logic_name=eponine scaffold_15 . biological_region 856539 856541 0.999 + . logic_name=eponine scaffold_15 . biological_region 856597 856600 0.999 + . logic_name=eponine scaffold_15 . biological_region 856649 856655 0.999 + . logic_name=eponine scaffold_15 . biological_region 856676 856681 0.999 - . logic_name=eponine scaffold_15 . biological_region 856711 856715 0.999 + . logic_name=eponine scaffold_15 . biological_region 856749 856757 0.999 + . logic_name=eponine scaffold_15 . biological_region 856752 856754 0.999 - . logic_name=eponine scaffold_15 . biological_region 856762 856765 0.999 + . logic_name=eponine scaffold_15 . biological_region 856779 856780 0.999 + . logic_name=eponine scaffold_15 . biological_region 856834 856834 0.999 + . logic_name=eponine scaffold_15 . biological_region 856941 856941 0.999 + . logic_name=eponine scaffold_15 . biological_region 857953 857957 0.999 + . logic_name=eponine scaffold_15 . biological_region 858864 858868 0.999 - . logic_name=eponine scaffold_15 ensembl protein_coding_gene 853687 856335 . + . ID=Physo108559;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150028;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 853687 856335 . + . ID=Physo108559;Parent=Physo108559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . exon 853687 853803 . + . ID=Physo108559.1;Parent=Physo108559;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_15 . CDS 853800 853803 . + 0 ID=Physo108559;Parent=Physo108559;rank=1 scaffold_15 . CDS 853963 854112 . + 0 ID=Physo108559;Parent=Physo108559;rank=2 scaffold_15 . exon 853963 854112 . + . ID=Physo108559.2;Parent=Physo108559;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 854191 854521 . + 0 ID=Physo108559;Parent=Physo108559;rank=3 scaffold_15 . exon 854191 854521 . + . ID=Physo108559.3;Parent=Physo108559;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_15 . CDS 854599 854971 . + 0 ID=Physo108559;Parent=Physo108559;rank=4 scaffold_15 . exon 854599 854971 . + . ID=Physo108559.4;Parent=Physo108559;constitutive=1;ensembl_phase=2;rank=4 scaffold_15 . CDS 855065 855203 . + 0 ID=Physo108559;Parent=Physo108559;rank=5 scaffold_15 . exon 855065 855203 . + . ID=Physo108559.5;Parent=Physo108559;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_15 . CDS 855272 855923 . + 0 ID=Physo108559;Parent=Physo108559;rank=6 scaffold_15 . exon 855272 855923 . + . ID=Physo108559.6;Parent=Physo108559;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_15 . CDS 855987 856071 . + 0 ID=Physo108559;Parent=Physo108559;rank=7 scaffold_15 . exon 855987 856335 . + . ID=Physo108559.7;Parent=Physo108559;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_15 ensembl protein_coding_gene 856511 857194 . - . ID=Physo108560;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150029;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 856511 857194 . - . ID=Physo108560;Parent=Physo108560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 856511 857194 . - 0 ID=Physo108560;Parent=Physo108560;rank=1 scaffold_15 . exon 856511 857194 . - . ID=Physo108560.1;Parent=Physo108560;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 858135 858701 . + . ID=Physo108561;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_150030;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 858135 858701 . + . ID=Physo108561;Parent=Physo108561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 858135 858701 . + 0 ID=Physo108561;Parent=Physo108561;rank=1 scaffold_15 . exon 858135 858701 . + . ID=Physo108561.1;Parent=Physo108561;constitutive=1;rank=1 scaffold_15 ensembl protein_coding_gene 861598 861933 . - . ID=Physo131450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150221;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 861598 861933 . - . ID=Physo131450;Parent=Physo131450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 861598 861933 . - 0 ID=Physo131450;Parent=Physo131450;rank=1 scaffold_15 . exon 861598 861933 . - . ID=Physo131450.1;Parent=Physo131450;constitutive=1;rank=1 scaffold_15 . repeat_region 865578 865585 . ? . description=dust scaffold_15 . repeat_region 870471 870496 . ? . description=trf scaffold_15 . biological_region 875433 875435 0.999 + . logic_name=eponine scaffold_15 ensembl protein_coding_gene 875430 876414 . + . ID=Physo131451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150222;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 875430 876414 . + . ID=Physo131451;Parent=Physo131451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 875430 876371 . + 0 ID=Physo131451;Parent=Physo131451;rank=1 scaffold_15 . exon 875430 876371 . + . ID=Physo131451.1;Parent=Physo131451;constitutive=1;rank=1 scaffold_15 . CDS 876406 876414 . + 0 ID=Physo131451;Parent=Physo131451;rank=2 scaffold_15 . exon 876406 876414 . + . ID=Physo131451.2;Parent=Physo131451;constitutive=1;rank=2 scaffold_15 ensembl protein_coding_gene 882559 901088 . + . ID=Physo131452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150223;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 882559 901088 . + . ID=Physo131452;Parent=Physo131452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 882559 896584 . + 0 ID=Physo131452;Parent=Physo131452;rank=1 scaffold_15 . exon 882559 896584 . + . ID=Physo131452.1;Parent=Physo131452;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 896649 896992 . + 0 ID=Physo131452;Parent=Physo131452;rank=2 scaffold_15 . CDS 897063 900461 . + 0 ID=Physo131452;Parent=Physo131452;rank=3 scaffold_15 . biological_region 892333 892334 0.999 + . logic_name=eponine scaffold_15 . biological_region 893700 893704 0.999 - . logic_name=eponine scaffold_15 . biological_region 894343 894346 0.999 + . logic_name=eponine scaffold_15 . biological_region 894402 894406 0.999 + . logic_name=eponine scaffold_15 . biological_region 894477 894480 0.999 - . logic_name=eponine scaffold_15 . biological_region 895171 895171 0.999 + . logic_name=eponine scaffold_15 . biological_region 895468 895471 0.999 - . logic_name=eponine scaffold_15 . biological_region 896419 896425 0.999 - . logic_name=eponine scaffold_15 . biological_region 897505 897507 0.999 - . logic_name=eponine scaffold_15 . biological_region 899466 899468 0.999 + . logic_name=eponine scaffold_15 . biological_region 899909 899912 0.999 - . logic_name=eponine scaffold_15 . biological_region 900800 900805 0.999 + . logic_name=eponine scaffold_15 . exon 896649 896992 . + . ID=Physo131452.2;Parent=Physo131452;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . exon 897063 901088 . + . ID=Physo131452.3;Parent=Physo131452;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_15 . repeat_region 902363 902457 . ? . description=dust scaffold_15 . repeat_region 905029 905153 . ? . description=trf scaffold_15 . repeat_region 905029 905153 . ? . description=trf scaffold_15 . repeat_region 905873 906031 . ? . description=trf scaffold_15 . repeat_region 909364 910293 . ? . description=dust scaffold_15 ensembl tRNA_gene 907092 907161 . - . ID=EPrPSOG00000000040;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_15 ensembl transcript 907092 907161 . - . ID=EPrPSOT00000000040;Parent=EPrPSOG00000000040;biotype=tRNA;logic_name=ncrna_eg scaffold_15 . exon 907092 907161 . - . ID=EPrPSOE00000000040;Parent=EPrPSOT00000000040;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 ensembl protein_coding_gene 902855 904983 . + . ID=Physo131454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150225;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 902855 904983 . + . ID=Physo131454;Parent=Physo131454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 902855 903053 . + 0 ID=Physo131454;Parent=Physo131454;rank=1 scaffold_15 . exon 902855 903053 . + . ID=Physo131454.1;Parent=Physo131454;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . CDS 903496 903683 . + 0 ID=Physo131454;Parent=Physo131454;rank=2 scaffold_15 . exon 903496 903683 . + . ID=Physo131454.2;Parent=Physo131454;constitutive=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 903922 904158 . + 0 ID=Physo131454;Parent=Physo131454;rank=3 scaffold_15 . exon 903922 904158 . + . ID=Physo131454.3;Parent=Physo131454;constitutive=1;rank=3 scaffold_15 . CDS 904195 904983 . + 0 ID=Physo131454;Parent=Physo131454;rank=4 scaffold_15 . exon 904195 904983 . + . ID=Physo131454.4;Parent=Physo131454;constitutive=1;rank=4 scaffold_15 . biological_region 913419 913423 0.999 - . logic_name=eponine scaffold_15 . biological_region 913427 913428 0.999 + . logic_name=eponine scaffold_15 . biological_region 913452 913456 0.999 - . logic_name=eponine scaffold_15 . biological_region 918094 918098 0.999 - . logic_name=eponine scaffold_15 . biological_region 918102 918103 0.999 + . logic_name=eponine scaffold_15 . biological_region 918127 918131 0.999 - . logic_name=eponine scaffold_15 . repeat_region 920621 921091 . - . description=GypsyPi-1c_I-int scaffold_15 . repeat_region 921093 921180 . - . description=GypsyPi-1c_I-int scaffold_15 . repeat_region 925222 925256 . ? . description=trf scaffold_15 . repeat_region 927392 927440 . ? . description=trf scaffold_15 . repeat_region 930443 930482 . ? . description=trf scaffold_15 ensembl protein_coding_gene 929407 933365 . + . ID=Physo131455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150226;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 929407 933365 . + . ID=Physo131455;Parent=Physo131455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 929407 930432 . + 0 ID=Physo131455;Parent=Physo131455;rank=1 scaffold_15 . exon 929407 930432 . + . ID=Physo131455.1;Parent=Physo131455;constitutive=1;rank=1 scaffold_15 . CDS 930687 931415 . + 0 ID=Physo131455;Parent=Physo131455;rank=2 scaffold_15 . exon 930687 931415 . + . ID=Physo131455.2;Parent=Physo131455;constitutive=1;rank=2 scaffold_15 . CDS 931505 931985 . + 0 ID=Physo131455;Parent=Physo131455;rank=3 scaffold_15 . CDS 932045 932365 . + 0 ID=Physo131455;Parent=Physo131455;rank=4 scaffold_15 . CDS 932609 932661 . + 0 ID=Physo131455;Parent=Physo131455;rank=5 scaffold_15 . CDS 932711 932794 . + 0 ID=Physo131455;Parent=Physo131455;rank=6 scaffold_15 . CDS 933018 933365 . + 0 ID=Physo131455;Parent=Physo131455;rank=7 scaffold_15 . repeat_region 929797 932767 . + . description=GypsyPi-1c_I-int scaffold_15 . biological_region 932198 932204 0.999 + . logic_name=eponine scaffold_15 . repeat_region 933269 933403 . + . description=GypsyPi-1c_I-int scaffold_15 . biological_region 934274 934283 0.999 + . logic_name=eponine scaffold_15 . biological_region 934387 934389 0.999 - . logic_name=eponine scaffold_15 . biological_region 934400 934406 0.999 + . logic_name=eponine scaffold_15 . repeat_region 936750 936759 . ? . description=dust scaffold_15 . biological_region 936757 936759 0.999 - . logic_name=eponine scaffold_15 . biological_region 939081 939083 0.999 - . logic_name=eponine scaffold_15 . repeat_region 939452 939459 . ? . description=dust scaffold_15 . repeat_region 939547 939557 . ? . description=dust scaffold_15 . biological_region 940231 940235 0.999 + . logic_name=eponine scaffold_15 . exon 931505 931985 . + . ID=Physo131455.3;Parent=Physo131455;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_15 . exon 932045 932365 . + . ID=Physo131455.4;Parent=Physo131455;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_15 . exon 932609 932661 . + . ID=Physo131455.5;Parent=Physo131455;constitutive=1;ensembl_phase=1;rank=5 scaffold_15 . exon 932711 932794 . + . ID=Physo131455.6;Parent=Physo131455;constitutive=1;rank=6 scaffold_15 . exon 933018 933365 . + . ID=Physo131455.7;Parent=Physo131455;constitutive=1;rank=7 scaffold_15 ensembl protein_coding_gene 933838 934807 . - . ID=Physo131456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_150227;logic_name=jgi_physo1_1 scaffold_15 ensembl transcript 933838 934807 . - . ID=Physo131456;Parent=Physo131456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_15 . CDS 933838 933920 . - 0 ID=Physo131456;Parent=Physo131456;rank=3 scaffold_15 . exon 933838 933920 . - . ID=Physo131456.3;Parent=Physo131456;constitutive=1;ensembl_phase=1;rank=3 scaffold_15 . CDS 933956 934330 . - 0 ID=Physo131456;Parent=Physo131456;rank=2 scaffold_15 . exon 933956 934330 . - . ID=Physo131456.2;Parent=Physo131456;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_15 . CDS 934381 934807 . - 0 ID=Physo131456;Parent=Physo131456;rank=1 scaffold_15 . exon 934381 934807 . - . ID=Physo131456.1;Parent=Physo131456;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_15 . repeat_region 946698 946758 . ? . description=trf ##gff-version 3 ##sequence-region scaffold_14 1 968429 scaffold_14 . biological_region 259 262 0.999 - . logic_name=eponine scaffold_14 . biological_region 583 586 0.999 + . logic_name=eponine scaffold_14 . biological_region 671 672 0.999 + . logic_name=eponine scaffold_14 . repeat_region 3916 3951 . ? . description=dust scaffold_14 . repeat_region 3970 7027 . ? . description=dust scaffold_14 . biological_region 8187 8190 0.999 + . logic_name=eponine scaffold_14 . repeat_region 8775 13199 . ? . description=dust scaffold_14 ensembl protein_coding_gene 15459 16829 . - . ID=Physo131003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140001;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 15459 16829 . - . ID=Physo131003;Parent=Physo131003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 15459 16829 . - . ID=Physo131003.1;Parent=Physo131003;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_14 . CDS 15627 16829 . - 0 ID=Physo131003;Parent=Physo131003;rank=1 scaffold_14 ensembl protein_coding_gene 18757 21888 . + . ID=Physo131004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140002;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 18757 21888 . + . ID=Physo131004;Parent=Physo131004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 18757 18898 . + 0 ID=Physo131004;Parent=Physo131004;rank=1 scaffold_14 . exon 18757 18898 . + . ID=Physo131004.1;Parent=Physo131004;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 19310 19397 . + 0 ID=Physo131004;Parent=Physo131004;rank=2 scaffold_14 . exon 19310 19397 . + . ID=Physo131004.2;Parent=Physo131004;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_14 . CDS 19417 20570 . + 0 ID=Physo131004;Parent=Physo131004;rank=3 scaffold_14 . exon 19417 20570 . + . ID=Physo131004.3;Parent=Physo131004;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 20613 21149 . + 0 ID=Physo131004;Parent=Physo131004;rank=4 scaffold_14 . CDS 21242 21888 . + 0 ID=Physo131004;Parent=Physo131004;rank=5 scaffold_14 . biological_region 19982 19986 0.999 - . logic_name=eponine scaffold_14 . biological_region 20009 20011 0.999 - . logic_name=eponine scaffold_14 . biological_region 21462 21463 0.999 + . logic_name=eponine scaffold_14 . repeat_region 21984 24387 . ? . description=dust scaffold_14 . biological_region 29472 29474 0.999 - . logic_name=eponine scaffold_14 . repeat_region 29918 29932 . ? . description=dust scaffold_14 . biological_region 29931 29932 0.999 - . logic_name=eponine scaffold_14 . exon 20613 21149 . + . ID=Physo131004.4;Parent=Physo131004;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_14 . exon 21242 21888 . + . ID=Physo131004.5;Parent=Physo131004;constitutive=1;ensembl_phase=1;rank=5 scaffold_14 ensembl protein_coding_gene 25512 29809 . - . ID=Physo131005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140003;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 25512 29809 . - . ID=Physo131005;Parent=Physo131005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 25512 26144 . - 0 ID=Physo131005;Parent=Physo131005;rank=8 scaffold_14 . exon 25512 26144 . - . ID=Physo131005.8;Parent=Physo131005;constitutive=1;rank=8 scaffold_14 . CDS 26214 26574 . - 0 ID=Physo131005;Parent=Physo131005;rank=7 scaffold_14 . exon 26214 26574 . - . ID=Physo131005.7;Parent=Physo131005;constitutive=1;ensembl_phase=2;rank=7 scaffold_14 . CDS 27355 27413 . - 0 ID=Physo131005;Parent=Physo131005;rank=6 scaffold_14 . exon 27355 27413 . - . ID=Physo131005.6;Parent=Physo131005;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_14 . CDS 27498 28286 . - 0 ID=Physo131005;Parent=Physo131005;rank=5 scaffold_14 . exon 27498 28286 . - . ID=Physo131005.5;Parent=Physo131005;constitutive=1;rank=5 scaffold_14 . CDS 28351 28472 . - 0 ID=Physo131005;Parent=Physo131005;rank=4 scaffold_14 . exon 28351 28472 . - . ID=Physo131005.4;Parent=Physo131005;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 28738 28875 . - 0 ID=Physo131005;Parent=Physo131005;rank=3 scaffold_14 . exon 28738 28875 . - . ID=Physo131005.3;Parent=Physo131005;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 29167 29315 . - 0 ID=Physo131005;Parent=Physo131005;rank=2 scaffold_14 . exon 29167 29315 . - . ID=Physo131005.2;Parent=Physo131005;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 29346 29809 . - 0 ID=Physo131005;Parent=Physo131005;rank=1 scaffold_14 . exon 29346 29809 . - . ID=Physo131005.1;Parent=Physo131005;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . repeat_region 29983 30006 . ? . description=trf scaffold_14 . repeat_region 38904 38927 . ? . description=trf scaffold_14 ensembl protein_coding_gene 34271 34906 . + . ID=Physo131006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140004;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 34271 34906 . + . ID=Physo131006;Parent=Physo131006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 34271 34906 . + 0 ID=Physo131006;Parent=Physo131006;rank=1 scaffold_14 . exon 34271 34906 . + . ID=Physo131006.1;Parent=Physo131006;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 39474 40931 . - . ID=Physo131007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140005;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 39474 40931 . - . ID=Physo131007;Parent=Physo131007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 39474 40605 . - 0 ID=Physo131007;Parent=Physo131007;rank=2 scaffold_14 . exon 39474 40605 . - . ID=Physo131007.2;Parent=Physo131007;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 40807 40931 . - 0 ID=Physo131007;Parent=Physo131007;rank=1 scaffold_14 . biological_region 39995 39995 0.999 - . logic_name=eponine scaffold_14 . biological_region 47644 47646 0.999 - . logic_name=eponine scaffold_14 . exon 40807 40931 . - . ID=Physo131007.1;Parent=Physo131007;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 44874 45398 . - . ID=Physo131008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140006;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 44874 45398 . - . ID=Physo131008;Parent=Physo131008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 44874 45398 . - 0 ID=Physo131008;Parent=Physo131008;rank=1 scaffold_14 . exon 44874 45398 . - . ID=Physo131008.1;Parent=Physo131008;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 46084 46401 . + . ID=Physo131009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140007;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 46084 46401 . + . ID=Physo131009;Parent=Physo131009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 46084 46401 . + 0 ID=Physo131009;Parent=Physo131009;rank=1 scaffold_14 . exon 46084 46401 . + . ID=Physo131009.1;Parent=Physo131009;constitutive=1;rank=1 scaffold_14 . repeat_region 51630 51637 . ? . description=dust scaffold_14 . repeat_region 53451 53500 . ? . description=dust scaffold_14 . repeat_region 56113 56125 . ? . description=dust scaffold_14 . repeat_region 59696 59731 . ? . description=trf scaffold_14 ensembl protein_coding_gene 56215 56960 . + . ID=Physo131010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140008;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 56215 56960 . + . ID=Physo131010;Parent=Physo131010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 56215 56836 . + 0 ID=Physo131010;Parent=Physo131010;rank=1 scaffold_14 . exon 56215 56836 . + . ID=Physo131010.1;Parent=Physo131010;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 56893 56960 . + 0 ID=Physo131010;Parent=Physo131010;rank=2 scaffold_14 . exon 56893 56960 . + . ID=Physo131010.2;Parent=Physo131010;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 65835 66362 . + . ID=Physo131011;biotype=protein_coding;description=PsAvh250 [Source:UniProtKB/TrEMBL%3BAcc:E0W4T0];external_name=estExt_fgenesh1_pg.C_140009;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 65835 66362 . + . ID=Physo131011;Parent=Physo131011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 65835 66362 . + 0 ID=Physo131011;Parent=Physo131011;rank=1 scaffold_14 . exon 65835 66362 . + . ID=Physo131011.1;Parent=Physo131011;constitutive=1;rank=1 scaffold_14 . biological_region 71129 71132 0.999 - . logic_name=eponine scaffold_14 . repeat_region 74427 74434 . ? . description=dust scaffold_14 . repeat_region 76811 76849 . ? . description=dust scaffold_14 . biological_region 79866 79869 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 70692 73747 . - . ID=Physo131012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140010;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 70692 73747 . - . ID=Physo131012;Parent=Physo131012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 70692 70694 . - 0 ID=Physo131012;Parent=Physo131012;rank=5 scaffold_14 . exon 70692 70694 . - . ID=Physo131012.5;Parent=Physo131012;constitutive=1;rank=5 scaffold_14 . CDS 70787 71608 . - 0 ID=Physo131012;Parent=Physo131012;rank=4 scaffold_14 . exon 70787 71608 . - . ID=Physo131012.4;Parent=Physo131012;constitutive=1;rank=4 scaffold_14 . CDS 71660 71729 . - 0 ID=Physo131012;Parent=Physo131012;rank=3 scaffold_14 . exon 71660 71729 . - . ID=Physo131012.3;Parent=Physo131012;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 72002 73364 . - 0 ID=Physo131012;Parent=Physo131012;rank=2 scaffold_14 . exon 72002 73364 . - . ID=Physo131012.2;Parent=Physo131012;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_14 . CDS 73435 73747 . - 0 ID=Physo131012;Parent=Physo131012;rank=1 scaffold_14 . exon 73435 73747 . - . ID=Physo131012.1;Parent=Physo131012;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . repeat_region 84594 84613 . ? . description=trf scaffold_14 . repeat_region 86329 86363 . ? . description=trf scaffold_14 . repeat_region 93271 93281 . ? . description=dust scaffold_14 . repeat_region 94447 94457 . ? . description=dust scaffold_14 . repeat_region 94784 94802 . ? . description=dust scaffold_14 . repeat_region 97501 97513 . ? . description=dust scaffold_14 . repeat_region 98831 98853 . ? . description=dust scaffold_14 . repeat_region 99108 99129 . ? . description=dust scaffold_14 . repeat_region 99717 99724 . ? . description=dust scaffold_14 . biological_region 100824 100827 0.999 + . logic_name=eponine scaffold_14 . repeat_region 108693 108728 . ? . description=trf scaffold_14 ensembl protein_coding_gene 107515 108099 . - . ID=Physo131013;biotype=protein_coding;description=PsAvh240 [Source:UniProtKB/TrEMBL%3BAcc:E0W4T1];external_name=estExt_fgenesh1_pg.C_140011;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 107515 108099 . - . ID=Physo131013;Parent=Physo131013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 107515 108099 . - 0 ID=Physo131013;Parent=Physo131013;rank=1 scaffold_14 . exon 107515 108099 . - . ID=Physo131013.1;Parent=Physo131013;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 116201 118717 . + . ID=Physo131014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140012;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 116201 118717 . + . ID=Physo131014;Parent=Physo131014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 116201 118717 . + 0 ID=Physo131014;Parent=Physo131014;rank=1 scaffold_14 . exon 116201 118717 . + . ID=Physo131014.1;Parent=Physo131014;constitutive=1;rank=1 scaffold_14 . repeat_region 120581 120588 . ? . description=dust scaffold_14 . repeat_region 128813 128822 . ? . description=dust scaffold_14 ensembl protein_coding_gene 129005 130401 . + . ID=Physo131015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140013;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 129005 130401 . + . ID=Physo131015;Parent=Physo131015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 129005 129232 . + 0 ID=Physo131015;Parent=Physo131015;rank=1 scaffold_14 . exon 129005 129232 . + . ID=Physo131015.1;Parent=Physo131015;constitutive=1;rank=1 scaffold_14 . CDS 129310 129396 . + 0 ID=Physo131015;Parent=Physo131015;rank=2 scaffold_14 . exon 129310 129396 . + . ID=Physo131015.2;Parent=Physo131015;constitutive=1;rank=2 scaffold_14 . CDS 129499 130401 . + 0 ID=Physo131015;Parent=Physo131015;rank=3 scaffold_14 . exon 129499 130401 . + . ID=Physo131015.3;Parent=Physo131015;constitutive=1;rank=3 scaffold_14 . biological_region 136105 136111 0.999 - . logic_name=eponine scaffold_14 . biological_region 136396 136396 0.999 - . logic_name=eponine scaffold_14 . biological_region 137903 137908 0.999 + . logic_name=eponine scaffold_14 . biological_region 138382 138383 0.999 + . logic_name=eponine scaffold_14 . biological_region 139093 139095 0.999 + . logic_name=eponine scaffold_14 . biological_region 139371 139371 0.999 + . logic_name=eponine scaffold_14 . biological_region 139438 139440 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 138308 138655 . + . ID=Physo113434;biotype=protein_coding;external_name=estExt_Genewise1.C_140102;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 138308 138655 . + . ID=Physo113434;Parent=Physo113434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 138308 138655 . + . ID=Physo113434.1;Parent=Physo113434;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 138491 138655 . + 0 ID=Physo113434;Parent=Physo113434;rank=1 scaffold_14 ensembl protein_coding_gene 135214 137217 . + . ID=Physo131016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140014;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 135214 137217 . + . ID=Physo131016;Parent=Physo131016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 135214 137217 . + 0 ID=Physo131016;Parent=Physo131016;rank=1 scaffold_14 . exon 135214 137217 . + . ID=Physo131016.1;Parent=Physo131016;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 137244 138127 . + . ID=Physo131017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140015;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 137244 138127 . + . ID=Physo131017;Parent=Physo131017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 137244 138127 . + . ID=Physo131017.1;Parent=Physo131017;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 137510 138127 . + 0 ID=Physo131017;Parent=Physo131017;rank=1 scaffold_14 ensembl protein_coding_gene 138802 140610 . - . ID=Physo131018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140016;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 138802 140610 . - . ID=Physo131018;Parent=Physo131018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 138802 140610 . - 0 ID=Physo131018;Parent=Physo131018;rank=1 scaffold_14 . exon 138802 140610 . - . ID=Physo131018.1;Parent=Physo131018;constitutive=1;rank=1 scaffold_14 . repeat_region 144275 144282 . ? . description=dust scaffold_14 . repeat_region 148309 148317 . ? . description=dust scaffold_14 ensembl protein_coding_gene 143370 143678 . - . ID=Physo113435;biotype=protein_coding;external_name=estExt_Genewise1.C_140103;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 143370 143678 . - . ID=Physo113435;Parent=Physo113435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 143370 143630 . - 0 ID=Physo113435;Parent=Physo113435;rank=1 scaffold_14 . exon 143370 143678 . - . ID=Physo113435.1;Parent=Physo113435;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 141599 143035 . + . ID=Physo131019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140017;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 141599 143035 . + . ID=Physo131019;Parent=Physo131019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 141599 143035 . + 0 ID=Physo131019;Parent=Physo131019;rank=1 scaffold_14 . exon 141599 143035 . + . ID=Physo131019.1;Parent=Physo131019;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 148369 152371 . - . ID=Physo131020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140018;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 148369 152371 . - . ID=Physo131020;Parent=Physo131020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 148369 150150 . - 0 ID=Physo131020;Parent=Physo131020;rank=5 scaffold_14 . exon 148369 150150 . - . ID=Physo131020.5;Parent=Physo131020;constitutive=1;rank=5 scaffold_14 . CDS 150538 150778 . - 0 ID=Physo131020;Parent=Physo131020;rank=4 scaffold_14 . CDS 150941 150964 . - 0 ID=Physo131020;Parent=Physo131020;rank=3 scaffold_14 . CDS 151058 151240 . - 0 ID=Physo131020;Parent=Physo131020;rank=2 scaffold_14 . CDS 151269 152371 . - 0 ID=Physo131020;Parent=Physo131020;rank=1 scaffold_14 . biological_region 150600 150600 0.999 + . logic_name=eponine scaffold_14 . biological_region 151382 151383 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 158826 159509 . - . ID=Physo108521;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140001;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 158826 159509 . - . ID=Physo108521;Parent=Physo108521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 158826 158888 . - 0 ID=Physo108521;Parent=Physo108521;rank=2 scaffold_14 . exon 158826 158888 . - . ID=Physo108521.2;Parent=Physo108521;constitutive=1;rank=2 scaffold_14 . CDS 158910 159509 . - 0 ID=Physo108521;Parent=Physo108521;rank=1 scaffold_14 . exon 158910 159509 . - . ID=Physo108521.1;Parent=Physo108521;constitutive=1;rank=1 scaffold_14 . exon 150538 150778 . - . ID=Physo131020.4;Parent=Physo131020;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 . exon 150941 150964 . - . ID=Physo131020.3;Parent=Physo131020;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_14 . exon 151058 151240 . - . ID=Physo131020.2;Parent=Physo131020;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . exon 151269 152371 . - . ID=Physo131020.1;Parent=Physo131020;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 152814 153551 . - . ID=Physo131021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140019;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 152814 153551 . - . ID=Physo131021;Parent=Physo131021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 152814 153551 . - 0 ID=Physo131021;Parent=Physo131021;rank=1 scaffold_14 . exon 152814 153551 . - . ID=Physo131021.1;Parent=Physo131021;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 156084 156842 . - . ID=Physo131022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140020;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 156084 156842 . - . ID=Physo131022;Parent=Physo131022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 156084 156565 . - 0 ID=Physo131022;Parent=Physo131022;rank=2 scaffold_14 . exon 156084 156565 . - . ID=Physo131022.2;Parent=Physo131022;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 156641 156842 . - 0 ID=Physo131022;Parent=Physo131022;rank=1 scaffold_14 . exon 156641 156842 . - . ID=Physo131022.1;Parent=Physo131022;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . repeat_region 164477 164486 . ? . description=dust scaffold_14 . repeat_region 164506 164535 . ? . description=trf scaffold_14 . repeat_region 164769 164780 . ? . description=dust scaffold_14 ensembl protein_coding_gene 162072 163694 . - . ID=Physo108522;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140002;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 162072 163694 . - . ID=Physo108522;Parent=Physo108522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 162072 163694 . - 0 ID=Physo108522;Parent=Physo108522;rank=1 scaffold_14 . exon 162072 163694 . - . ID=Physo108522.1;Parent=Physo108522;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 161003 161743 . + . ID=Physo131024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140022;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 161003 161743 . + . ID=Physo131024;Parent=Physo131024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 161003 161743 . + 0 ID=Physo131024;Parent=Physo131024;rank=1 scaffold_14 . exon 161003 161743 . + . ID=Physo131024.1;Parent=Physo131024;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 165231 167283 . + . ID=Physo131026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140024;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 165231 167283 . + . ID=Physo131026;Parent=Physo131026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 165231 165561 . + 0 ID=Physo131026;Parent=Physo131026;rank=1 scaffold_14 . exon 165231 165561 . + . ID=Physo131026.1;Parent=Physo131026;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 165713 165811 . + 0 ID=Physo131026;Parent=Physo131026;rank=2 scaffold_14 . exon 165713 165811 . + . ID=Physo131026.2;Parent=Physo131026;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 165881 166820 . + 0 ID=Physo131026;Parent=Physo131026;rank=3 scaffold_14 . exon 165881 166820 . + . ID=Physo131026.3;Parent=Physo131026;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_14 . CDS 166893 167262 . + 0 ID=Physo131026;Parent=Physo131026;rank=4 scaffold_14 . exon 166893 167283 . + . ID=Physo131026.4;Parent=Physo131026;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_14 ensembl protein_coding_gene 167386 168330 . - . ID=Physo131027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140025;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 167386 168330 . - . ID=Physo131027;Parent=Physo131027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 167386 167684 . - 0 ID=Physo131027;Parent=Physo131027;rank=2 scaffold_14 . exon 167386 167684 . - . ID=Physo131027.2;Parent=Physo131027;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 167721 168330 . - 0 ID=Physo131027;Parent=Physo131027;rank=1 scaffold_14 . exon 167721 168330 . - . ID=Physo131027.1;Parent=Physo131027;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . biological_region 179070 179072 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 171728 173011 . - . ID=Physo131028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140026;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 171728 173011 . - . ID=Physo131028;Parent=Physo131028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 171728 172126 . - 0 ID=Physo131028;Parent=Physo131028;rank=3 scaffold_14 . exon 171728 172126 . - . ID=Physo131028.3;Parent=Physo131028;constitutive=1;rank=3 scaffold_14 . CDS 172168 172752 . - 0 ID=Physo131028;Parent=Physo131028;rank=2 scaffold_14 . exon 172168 172752 . - . ID=Physo131028.2;Parent=Physo131028;constitutive=1;rank=2 scaffold_14 . CDS 172772 173011 . - 0 ID=Physo131028;Parent=Physo131028;rank=1 scaffold_14 . exon 172772 173011 . - . ID=Physo131028.1;Parent=Physo131028;constitutive=1;rank=1 scaffold_14 . repeat_region 185509 185516 . ? . description=dust scaffold_14 ensembl protein_coding_gene 187709 191578 . - . ID=Physo113454;biotype=protein_coding;external_name=estExt_Genewise1.C_140122;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 187709 191578 . - . ID=Physo113454;Parent=Physo113454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 187709 188008 . - 0 ID=Physo113454;Parent=Physo113454;rank=3 scaffold_14 . exon 187709 188008 . - . ID=Physo113454.3;Parent=Physo113454;constitutive=1;rank=3 scaffold_14 . CDS 188022 188029 . - 0 ID=Physo113454;Parent=Physo113454;rank=2 scaffold_14 . exon 188022 188029 . - . ID=Physo113454.2;Parent=Physo113454;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 191218 191578 . - 0 ID=Physo113454;Parent=Physo113454;rank=1 scaffold_14 ensembl protein_coding_gene 179751 180980 . + . ID=Physo131029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140027;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 179751 180980 . + . ID=Physo131029;Parent=Physo131029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 179751 179765 . + 0 ID=Physo131029;Parent=Physo131029;rank=1 scaffold_14 . exon 179751 179765 . + . ID=Physo131029.1;Parent=Physo131029;constitutive=1;rank=1 scaffold_14 . CDS 180195 180222 . + 0 ID=Physo131029;Parent=Physo131029;rank=2 scaffold_14 . exon 180195 180222 . + . ID=Physo131029.2;Parent=Physo131029;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 180289 180825 . + 0 ID=Physo131029;Parent=Physo131029;rank=3 scaffold_14 . exon 180289 180825 . + . ID=Physo131029.3;Parent=Physo131029;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 180964 180980 . + 0 ID=Physo131029;Parent=Physo131029;rank=4 scaffold_14 . exon 180964 180980 . + . ID=Physo131029.4;Parent=Physo131029;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 ensembl protein_coding_gene 181918 183259 . - . ID=Physo131030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140028;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 181918 183259 . - . ID=Physo131030;Parent=Physo131030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 181918 182508 . - 0 ID=Physo131030;Parent=Physo131030;rank=3 scaffold_14 . exon 181918 182508 . - . ID=Physo131030.3;Parent=Physo131030;constitutive=1;rank=3 scaffold_14 . CDS 182537 183149 . - 0 ID=Physo131030;Parent=Physo131030;rank=2 scaffold_14 . exon 182537 183149 . - . ID=Physo131030.2;Parent=Physo131030;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 183183 183259 . - 0 ID=Physo131030;Parent=Physo131030;rank=1 scaffold_14 . exon 183183 183259 . - . ID=Physo131030.1;Parent=Physo131030;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 184691 185494 . + . ID=Physo131031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140029;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 184691 185494 . + . ID=Physo131031;Parent=Physo131031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 184691 184722 . + 0 ID=Physo131031;Parent=Physo131031;rank=1 scaffold_14 . exon 184691 184722 . + . ID=Physo131031.1;Parent=Physo131031;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 184762 185494 . + 0 ID=Physo131031;Parent=Physo131031;rank=2 scaffold_14 . exon 184762 185494 . + . ID=Physo131031.2;Parent=Physo131031;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . repeat_region 191156 191201 . ? . description=trf scaffold_14 . repeat_region 192179 192293 . ? . description=trf scaffold_14 . repeat_region 194749 194866 . ? . description=trf scaffold_14 . repeat_region 195919 195979 . ? . description=trf scaffold_14 . repeat_region 196966 197078 . ? . description=trf scaffold_14 . repeat_region 199538 199565 . ? . description=trf scaffold_14 . exon 191218 191578 . - . ID=Physo113454.1;Parent=Physo113454;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 193508 194257 . + . ID=Physo131034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140032;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 193508 194257 . + . ID=Physo131034;Parent=Physo131034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 193508 194257 . + 0 ID=Physo131034;Parent=Physo131034;rank=1 scaffold_14 . exon 193508 194257 . + . ID=Physo131034.1;Parent=Physo131034;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 199610 200619 . - . ID=Physo131035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140033;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 199610 200619 . - . ID=Physo131035;Parent=Physo131035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 199610 199821 . - 0 ID=Physo131035;Parent=Physo131035;rank=4 scaffold_14 . exon 199610 199821 . - . ID=Physo131035.4;Parent=Physo131035;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 199913 200173 . - 0 ID=Physo131035;Parent=Physo131035;rank=3 scaffold_14 . CDS 200267 200402 . - 0 ID=Physo131035;Parent=Physo131035;rank=2 scaffold_14 . CDS 200470 200619 . - 0 ID=Physo131035;Parent=Physo131035;rank=1 scaffold_14 . repeat_region 202598 202605 . ? . description=dust scaffold_14 . biological_region 204501 204502 0.999 - . logic_name=eponine scaffold_14 . biological_region 209196 209198 0.999 + . logic_name=eponine scaffold_14 . exon 199913 200173 . - . ID=Physo131035.3;Parent=Physo131035;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . exon 200267 200402 . - . ID=Physo131035.2;Parent=Physo131035;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . exon 200470 200619 . - . ID=Physo131035.1;Parent=Physo131035;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 203396 203920 . - . ID=Physo131036;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140034;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 203396 203920 . - . ID=Physo131036;Parent=Physo131036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 203396 203540 . - 0 ID=Physo131036;Parent=Physo131036;rank=2 scaffold_14 . exon 203396 203540 . - . ID=Physo131036.2;Parent=Physo131036;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 203580 203920 . - 0 ID=Physo131036;Parent=Physo131036;rank=1 scaffold_14 . exon 203580 203920 . - . ID=Physo131036.1;Parent=Physo131036;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 209242 210363 . - . ID=Physo131037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140035;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 209242 210363 . - . ID=Physo131037;Parent=Physo131037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 209242 209378 . - 0 ID=Physo131037;Parent=Physo131037;rank=4 scaffold_14 . exon 209242 209378 . - . ID=Physo131037.4;Parent=Physo131037;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 209471 209605 . - 0 ID=Physo131037;Parent=Physo131037;rank=3 scaffold_14 . exon 209471 209605 . - . ID=Physo131037.3;Parent=Physo131037;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 209625 209922 . - 0 ID=Physo131037;Parent=Physo131037;rank=2 scaffold_14 . exon 209625 209922 . - . ID=Physo131037.2;Parent=Physo131037;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 210187 210363 . - 0 ID=Physo131037;Parent=Physo131037;rank=1 scaffold_14 ensembl protein_coding_gene 212738 212992 . - . ID=Physo113458;biotype=protein_coding;external_name=estExt_Genewise1.C_140126;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 212738 212992 . - . ID=Physo113458;Parent=Physo113458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 212738 212953 . - 0 ID=Physo113458;Parent=Physo113458;rank=1 scaffold_14 . exon 212738 212992 . - . ID=Physo113458.1;Parent=Physo113458;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . exon 210187 210363 . - . ID=Physo131037.1;Parent=Physo131037;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 211767 212180 . - . ID=Physo131038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140036;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 211767 212180 . - . ID=Physo131038;Parent=Physo131038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 211767 212180 . - 0 ID=Physo131038;Parent=Physo131038;rank=1 scaffold_14 . exon 211767 212180 . - . ID=Physo131038.1;Parent=Physo131038;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 213084 217425 . - . ID=Physo131040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140038;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 213084 217425 . - . ID=Physo131040;Parent=Physo131040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 213084 213873 . - . ID=Physo131040.3;Parent=Physo131040;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_14 . CDS 213086 213873 . - 0 ID=Physo131040;Parent=Physo131040;rank=3 scaffold_14 . CDS 213907 214046 . - 0 ID=Physo131040;Parent=Physo131040;rank=2 scaffold_14 . exon 213907 214046 . - . ID=Physo131040.2;Parent=Physo131040;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 214214 217425 . - 0 ID=Physo131040;Parent=Physo131040;rank=1 scaffold_14 . exon 214214 217425 . - . ID=Physo131040.1;Parent=Physo131040;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 217905 218778 . + . ID=Physo131041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140039;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 217905 218778 . + . ID=Physo131041;Parent=Physo131041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 217905 217911 . + 0 ID=Physo131041;Parent=Physo131041;rank=1 scaffold_14 . exon 217905 217911 . + . ID=Physo131041.1;Parent=Physo131041;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 218234 218778 . + 0 ID=Physo131041;Parent=Physo131041;rank=2 scaffold_14 . exon 218234 218778 . + . ID=Physo131041.2;Parent=Physo131041;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . biological_region 221200 221200 0.999 + . logic_name=eponine scaffold_14 . biological_region 224522 224524 0.999 + . logic_name=eponine scaffold_14 . repeat_region 228610 228618 . ? . description=dust scaffold_14 . biological_region 228769 228770 0.999 - . logic_name=eponine scaffold_14 . biological_region 228792 228793 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 221477 223910 . - . ID=Physo131042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140040;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 221477 223910 . - . ID=Physo131042;Parent=Physo131042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 221477 222906 . - 0 ID=Physo131042;Parent=Physo131042;rank=3 scaffold_14 . exon 221477 222906 . - . ID=Physo131042.3;Parent=Physo131042;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 223081 223304 . - 0 ID=Physo131042;Parent=Physo131042;rank=2 scaffold_14 . exon 223081 223304 . - . ID=Physo131042.2;Parent=Physo131042;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 223876 223910 . - 0 ID=Physo131042;Parent=Physo131042;rank=1 scaffold_14 . exon 223876 223910 . - . ID=Physo131042.1;Parent=Physo131042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 224919 226639 . + . ID=Physo131043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140041;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 224919 226639 . + . ID=Physo131043;Parent=Physo131043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 224919 224988 . + 0 ID=Physo131043;Parent=Physo131043;rank=1 scaffold_14 . exon 224919 224988 . + . ID=Physo131043.1;Parent=Physo131043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 225009 225704 . + 0 ID=Physo131043;Parent=Physo131043;rank=2 scaffold_14 . exon 225009 225704 . + . ID=Physo131043.2;Parent=Physo131043;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 226018 226115 . + 0 ID=Physo131043;Parent=Physo131043;rank=3 scaffold_14 . exon 226018 226115 . + . ID=Physo131043.3;Parent=Physo131043;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 226217 226639 . + 0 ID=Physo131043;Parent=Physo131043;rank=4 scaffold_14 . exon 226217 226639 . + . ID=Physo131043.4;Parent=Physo131043;constitutive=1;rank=4 scaffold_14 ensembl protein_coding_gene 227395 228290 . - . ID=Physo131044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140042;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 227395 228290 . - . ID=Physo131044;Parent=Physo131044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 227395 227493 . - 0 ID=Physo131044;Parent=Physo131044;rank=4 scaffold_14 . exon 227395 227493 . - . ID=Physo131044.4;Parent=Physo131044;constitutive=1;rank=4 scaffold_14 . CDS 227550 227789 . - 0 ID=Physo131044;Parent=Physo131044;rank=3 scaffold_14 . exon 227550 227789 . - . ID=Physo131044.3;Parent=Physo131044;constitutive=1;rank=3 scaffold_14 . CDS 227829 227942 . - 0 ID=Physo131044;Parent=Physo131044;rank=2 scaffold_14 . exon 227829 227942 . - . ID=Physo131044.2;Parent=Physo131044;constitutive=1;rank=2 scaffold_14 . CDS 227994 228290 . - 0 ID=Physo131044;Parent=Physo131044;rank=1 scaffold_14 . exon 227994 228290 . - . ID=Physo131044.1;Parent=Physo131044;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 229228 229961 . + . ID=Physo131045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140043;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 229228 229961 . + . ID=Physo131045;Parent=Physo131045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 229228 229681 . + 0 ID=Physo131045;Parent=Physo131045;rank=1 scaffold_14 . exon 229228 229681 . + . ID=Physo131045.1;Parent=Physo131045;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 229741 229961 . + 0 ID=Physo131045;Parent=Physo131045;rank=2 scaffold_14 . repeat_region 232536 232578 . ? . description=trf scaffold_14 . repeat_region 232551 232648 . ? . description=trf scaffold_14 . repeat_region 237683 237744 . ? . description=trf scaffold_14 . repeat_region 237764 237812 . ? . description=trf scaffold_14 . exon 229741 229961 . + . ID=Physo131045.2;Parent=Physo131045;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 233430 235353 . + . ID=Physo131046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140044;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 233430 235353 . + . ID=Physo131046;Parent=Physo131046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 233430 233749 . + 0 ID=Physo131046;Parent=Physo131046;rank=1 scaffold_14 . exon 233430 233749 . + . ID=Physo131046.1;Parent=Physo131046;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 233791 234125 . + 0 ID=Physo131046;Parent=Physo131046;rank=2 scaffold_14 . exon 233791 234125 . + . ID=Physo131046.2;Parent=Physo131046;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 234670 235054 . + 0 ID=Physo131046;Parent=Physo131046;rank=3 scaffold_14 . exon 234670 235054 . + . ID=Physo131046.3;Parent=Physo131046;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_14 . CDS 235080 235353 . + 0 ID=Physo131046;Parent=Physo131046;rank=4 scaffold_14 . exon 235080 235353 . + . ID=Physo131046.4;Parent=Physo131046;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 ensembl protein_coding_gene 235894 236643 . - . ID=Physo131047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140045;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 235894 236643 . - . ID=Physo131047;Parent=Physo131047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 235894 236643 . - 0 ID=Physo131047;Parent=Physo131047;rank=1 scaffold_14 . exon 235894 236643 . - . ID=Physo131047.1;Parent=Physo131047;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 237463 237907 . - . ID=Physo131048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140046;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 237463 237907 . - . ID=Physo131048;Parent=Physo131048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 237463 237582 . - 0 ID=Physo131048;Parent=Physo131048;rank=3 scaffold_14 . exon 237463 237582 . - . ID=Physo131048.3;Parent=Physo131048;constitutive=1;rank=3 scaffold_14 . CDS 237647 237718 . - 0 ID=Physo131048;Parent=Physo131048;rank=2 scaffold_14 . exon 237647 237718 . - . ID=Physo131048.2;Parent=Physo131048;constitutive=1;rank=2 scaffold_14 . CDS 237779 237907 . - 0 ID=Physo131048;Parent=Physo131048;rank=1 scaffold_14 . exon 237779 237907 . - . ID=Physo131048.1;Parent=Physo131048;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 239500 240358 . - . ID=Physo131049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140047;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 239500 240358 . - . ID=Physo131049;Parent=Physo131049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 239500 239521 . - 0 ID=Physo131049;Parent=Physo131049;rank=5 scaffold_14 . exon 239500 239521 . - . ID=Physo131049.5;Parent=Physo131049;constitutive=1;ensembl_phase=2;rank=5 scaffold_14 . CDS 239605 239924 . - 0 ID=Physo131049;Parent=Physo131049;rank=4 scaffold_14 . exon 239605 239924 . - . ID=Physo131049.4;Parent=Physo131049;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_14 . CDS 239959 240068 . - 0 ID=Physo131049;Parent=Physo131049;rank=3 scaffold_14 . CDS 240112 240265 . - 0 ID=Physo131049;Parent=Physo131049;rank=2 scaffold_14 . CDS 240335 240358 . - 0 ID=Physo131049;Parent=Physo131049;rank=1 scaffold_14 . biological_region 239699 239704 0.999 + . logic_name=eponine scaffold_14 . biological_region 239707 239712 0.999 + . logic_name=eponine scaffold_14 . biological_region 239752 239754 0.999 + . logic_name=eponine scaffold_14 . biological_region 245306 245314 0.999 + . logic_name=eponine scaffold_14 . biological_region 245330 245333 0.999 + . logic_name=eponine scaffold_14 . biological_region 245403 245407 0.999 - . logic_name=eponine scaffold_14 . repeat_region 245954 246234 . - . description=GypsyPi-1c_I-int scaffold_14 . repeat_region 246374 246381 . ? . description=dust scaffold_14 . repeat_region 246504 248884 . - . description=GypsyPi-1c_I-int scaffold_14 . biological_region 248664 248665 0.999 - . logic_name=eponine scaffold_14 . biological_region 249419 249423 0.999 + . logic_name=eponine scaffold_14 . biological_region 249459 249461 0.999 + . logic_name=eponine scaffold_14 . biological_region 249485 249488 0.999 - . logic_name=eponine scaffold_14 . biological_region 249554 249557 0.999 - . logic_name=eponine scaffold_14 . exon 239959 240068 . - . ID=Physo131049.3;Parent=Physo131049;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . exon 240112 240265 . - . ID=Physo131049.2;Parent=Physo131049;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . exon 240335 240358 . - . ID=Physo131049.1;Parent=Physo131049;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 240803 241549 . + . ID=Physo131050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140048;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 240803 241549 . + . ID=Physo131050;Parent=Physo131050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 240803 241105 . + 0 ID=Physo131050;Parent=Physo131050;rank=1 scaffold_14 . exon 240803 241105 . + . ID=Physo131050.1;Parent=Physo131050;constitutive=1;rank=1 scaffold_14 . CDS 241145 241549 . + 0 ID=Physo131050;Parent=Physo131050;rank=2 scaffold_14 . exon 241145 241549 . + . ID=Physo131050.2;Parent=Physo131050;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 246192 249600 . - . ID=Physo131051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140049;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 246192 249600 . - . ID=Physo131051;Parent=Physo131051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 246192 246198 . - 0 ID=Physo131051;Parent=Physo131051;rank=2 scaffold_14 . exon 246192 246198 . - . ID=Physo131051.2;Parent=Physo131051;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 246239 249600 . - 0 ID=Physo131051;Parent=Physo131051;rank=1 scaffold_14 . exon 246239 249600 . - . ID=Physo131051.1;Parent=Physo131051;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . repeat_region 252691 252744 . ? . description=trf scaffold_14 . repeat_region 256897 256979 . ? . description=trf scaffold_14 . repeat_region 256918 256980 . ? . description=trf scaffold_14 . repeat_region 257015 257052 . ? . description=trf scaffold_14 . repeat_region 257184 257221 . ? . description=trf scaffold_14 ensembl protein_coding_gene 249733 250227 . - . ID=Physo131052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140050;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 249733 250227 . - . ID=Physo131052;Parent=Physo131052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 249733 250227 . - 0 ID=Physo131052;Parent=Physo131052;rank=1 scaffold_14 . exon 249733 250227 . - . ID=Physo131052.1;Parent=Physo131052;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 256583 257890 . + . ID=Physo131053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140051;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 256583 257890 . + . ID=Physo131053;Parent=Physo131053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 256583 257890 . + 0 ID=Physo131053;Parent=Physo131053;rank=1 scaffold_14 . exon 256583 257890 . + . ID=Physo131053.1;Parent=Physo131053;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 258047 260180 . - . ID=Physo131054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140052;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 258047 260180 . - . ID=Physo131054;Parent=Physo131054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 258047 259166 . - 0 ID=Physo131054;Parent=Physo131054;rank=5 scaffold_14 . exon 258047 259166 . - . ID=Physo131054.5;Parent=Physo131054;constitutive=1;ensembl_phase=2;rank=5 scaffold_14 . CDS 259247 259330 . - 0 ID=Physo131054;Parent=Physo131054;rank=4 scaffold_14 . exon 259247 259330 . - . ID=Physo131054.4;Parent=Physo131054;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 259402 259541 . - 0 ID=Physo131054;Parent=Physo131054;rank=3 scaffold_14 . exon 259402 259541 . - . ID=Physo131054.3;Parent=Physo131054;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_14 . CDS 259613 259678 . - 0 ID=Physo131054;Parent=Physo131054;rank=2 scaffold_14 . CDS 259770 260180 . - 0 ID=Physo131054;Parent=Physo131054;rank=1 scaffold_14 . repeat_region 260046 260062 . ? . description=dust scaffold_14 . biological_region 260067 260073 0.999 + . logic_name=eponine scaffold_14 . biological_region 260089 260103 0.999 + . logic_name=eponine scaffold_14 . repeat_region 260094 260156 . ? . description=dust scaffold_14 . biological_region 260187 260190 0.999 - . logic_name=eponine scaffold_14 . biological_region 260234 260239 0.999 - . logic_name=eponine scaffold_14 . repeat_region 260357 260389 . ? . description=dust scaffold_14 . repeat_region 260476 260484 . ? . description=dust scaffold_14 . biological_region 267526 267527 0.999 + . logic_name=eponine scaffold_14 . biological_region 268895 268897 0.999 + . logic_name=eponine scaffold_14 . exon 259613 259678 . - . ID=Physo131054.2;Parent=Physo131054;constitutive=1;rank=2 scaffold_14 . exon 259770 260180 . - . ID=Physo131054.1;Parent=Physo131054;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 260955 262342 . + . ID=Physo131055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140053;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 260955 262342 . + . ID=Physo131055;Parent=Physo131055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 260955 261793 . + 0 ID=Physo131055;Parent=Physo131055;rank=1 scaffold_14 . exon 260955 261793 . + . ID=Physo131055.1;Parent=Physo131055;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 261835 262342 . + 0 ID=Physo131055;Parent=Physo131055;rank=2 scaffold_14 . exon 261835 262342 . + . ID=Physo131055.2;Parent=Physo131055;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 264652 265110 . - . ID=Physo131056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140054;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 264652 265110 . - . ID=Physo131056;Parent=Physo131056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 264652 265110 . - 0 ID=Physo131056;Parent=Physo131056;rank=1 scaffold_14 . exon 264652 265110 . - . ID=Physo131056.1;Parent=Physo131056;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 266646 267816 . - . ID=Physo131057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140055;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 266646 267816 . - . ID=Physo131057;Parent=Physo131057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 266646 267181 . - 0 ID=Physo131057;Parent=Physo131057;rank=3 scaffold_14 . exon 266646 267181 . - . ID=Physo131057.3;Parent=Physo131057;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 267263 267383 . - 0 ID=Physo131057;Parent=Physo131057;rank=2 scaffold_14 . exon 267263 267383 . - . ID=Physo131057.2;Parent=Physo131057;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 267511 267816 . - 0 ID=Physo131057;Parent=Physo131057;rank=1 scaffold_14 . exon 267511 267816 . - . ID=Physo131057.1;Parent=Physo131057;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 268959 270085 . + . ID=Physo131058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140056;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 268959 270085 . + . ID=Physo131058;Parent=Physo131058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 268959 269218 . + . ID=Physo131058.1;Parent=Physo131058;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 268960 269218 . + 0 ID=Physo131058;Parent=Physo131058;rank=1 scaffold_14 . CDS 269284 269373 . + 0 ID=Physo131058;Parent=Physo131058;rank=2 scaffold_14 . exon 269284 269373 . + . ID=Physo131058.2;Parent=Physo131058;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 269453 269850 . + 0 ID=Physo131058;Parent=Physo131058;rank=3 scaffold_14 . exon 269453 269850 . + . ID=Physo131058.3;Parent=Physo131058;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 269973 270050 . + 0 ID=Physo131058;Parent=Physo131058;rank=4 scaffold_14 . repeat_region 271225 271270 . ? . description=trf scaffold_14 . repeat_region 272163 272194 . ? . description=trf scaffold_14 . repeat_region 273353 273377 . ? . description=trf scaffold_14 . exon 269973 270085 . + . ID=Physo131058.4;Parent=Physo131058;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_14 ensembl protein_coding_gene 270485 271456 . - . ID=Physo131059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140057;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 270485 271456 . - . ID=Physo131059;Parent=Physo131059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 270485 271456 . - 0 ID=Physo131059;Parent=Physo131059;rank=1 scaffold_14 . exon 270485 271456 . - . ID=Physo131059.1;Parent=Physo131059;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 271722 272260 . + . ID=Physo131060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140058;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 271722 272260 . + . ID=Physo131060;Parent=Physo131060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 271722 272034 . + . ID=Physo131060.1;Parent=Physo131060;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 271723 272034 . + 0 ID=Physo131060;Parent=Physo131060;rank=1 scaffold_14 . CDS 272113 272253 . + 0 ID=Physo131060;Parent=Physo131060;rank=2 scaffold_14 . exon 272113 272260 . + . ID=Physo131060.2;Parent=Physo131060;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_14 ensembl protein_coding_gene 272551 273882 . - . ID=Physo131061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140059;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 272551 273882 . - . ID=Physo131061;Parent=Physo131061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 272551 272859 . - 0 ID=Physo131061;Parent=Physo131061;rank=2 scaffold_14 . exon 272551 272859 . - . ID=Physo131061.2;Parent=Physo131061;constitutive=1;rank=2 scaffold_14 . CDS 272944 273882 . - 0 ID=Physo131061;Parent=Physo131061;rank=1 scaffold_14 . exon 272944 273882 . - . ID=Physo131061.1;Parent=Physo131061;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 274157 275467 . + . ID=Physo131062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140060;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 274157 275467 . + . ID=Physo131062;Parent=Physo131062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 274157 274287 . + 0 ID=Physo131062;Parent=Physo131062;rank=1 scaffold_14 . exon 274157 274287 . + . ID=Physo131062.1;Parent=Physo131062;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 274387 275467 . + 0 ID=Physo131062;Parent=Physo131062;rank=2 scaffold_14 . exon 274387 275467 . + . ID=Physo131062.2;Parent=Physo131062;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 275540 277474 . - . ID=Physo131063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140061;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 275540 277474 . - . ID=Physo131063;Parent=Physo131063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 275540 277474 . - 0 ID=Physo131063;Parent=Physo131063;rank=1 scaffold_14 . exon 275540 277474 . - . ID=Physo131063.1;Parent=Physo131063;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 278861 283955 . - . ID=Physo131064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140062;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 278861 283955 . - . ID=Physo131064;Parent=Physo131064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 278861 279131 . - 0 ID=Physo131064;Parent=Physo131064;rank=10 scaffold_14 . exon 278861 279131 . - . ID=Physo131064.10;Parent=Physo131064;constitutive=1;ensembl_phase=2;rank=10 scaffold_14 . CDS 279184 279590 . - 0 ID=Physo131064;Parent=Physo131064;rank=9 scaffold_14 . exon 279184 279590 . - . ID=Physo131064.9;Parent=Physo131064;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_14 . CDS 279876 280230 . - 0 ID=Physo131064;Parent=Physo131064;rank=8 scaffold_14 . CDS 280274 280482 . - 0 ID=Physo131064;Parent=Physo131064;rank=7 scaffold_14 . CDS 280560 280816 . - 0 ID=Physo131064;Parent=Physo131064;rank=6 scaffold_14 . CDS 280838 282186 . - 0 ID=Physo131064;Parent=Physo131064;rank=5 scaffold_14 . CDS 282569 282791 . - 0 ID=Physo131064;Parent=Physo131064;rank=4 scaffold_14 . CDS 282910 283151 . - 0 ID=Physo131064;Parent=Physo131064;rank=3 scaffold_14 . CDS 283234 283740 . - 0 ID=Physo131064;Parent=Physo131064;rank=2 scaffold_14 . CDS 283816 283955 . - 0 ID=Physo131064;Parent=Physo131064;rank=1 scaffold_14 . biological_region 280042 280047 0.999 - . logic_name=eponine scaffold_14 . biological_region 281902 281906 0.999 + . logic_name=eponine scaffold_14 . biological_region 282673 282676 0.999 - . logic_name=eponine scaffold_14 . repeat_region 284575 284583 . ? . description=dust scaffold_14 . exon 279876 280230 . - . ID=Physo131064.8;Parent=Physo131064;constitutive=1;ensembl_phase=2;rank=8 scaffold_14 . exon 280274 280482 . - . ID=Physo131064.7;Parent=Physo131064;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_14 . exon 280560 280816 . - . ID=Physo131064.6;Parent=Physo131064;constitutive=1;ensembl_phase=1;rank=6 scaffold_14 . exon 280838 282186 . - . ID=Physo131064.5;Parent=Physo131064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_14 . exon 282569 282791 . - . ID=Physo131064.4;Parent=Physo131064;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_14 . exon 282910 283151 . - . ID=Physo131064.3;Parent=Physo131064;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_14 . exon 283234 283740 . - . ID=Physo131064.2;Parent=Physo131064;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_14 . exon 283816 283955 . - . ID=Physo131064.1;Parent=Physo131064;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . repeat_region 297200 297253 . + . description=(TTTAG)n scaffold_14 . repeat_region 297202 297253 . ? . description=trf scaffold_14 ensembl protein_coding_gene 290948 292447 . - . ID=Physo131065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140063;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 290948 292447 . - . ID=Physo131065;Parent=Physo131065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 290948 292447 . - 0 ID=Physo131065;Parent=Physo131065;rank=1 scaffold_14 . exon 290948 292447 . - . ID=Physo131065.1;Parent=Physo131065;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 294986 296625 . + . ID=Physo131066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140064;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 294986 296625 . + . ID=Physo131066;Parent=Physo131066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 294986 296479 . + 0 ID=Physo131066;Parent=Physo131066;rank=1 scaffold_14 . exon 294986 296556 . + . ID=Physo131066.1;Parent=Physo131066;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_14 . exon 296585 296625 . + . ID=Physo131066.2;Parent=Physo131066;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_14 . repeat_region 299536 299545 . ? . description=dust scaffold_14 . repeat_region 300426 300440 . ? . description=dust scaffold_14 . repeat_region 303112 303124 . ? . description=dust scaffold_14 . biological_region 304135 304138 0.999 - . logic_name=eponine scaffold_14 . biological_region 304173 304178 0.999 - . logic_name=eponine scaffold_14 . biological_region 305610 305615 0.999 - . logic_name=eponine scaffold_14 . biological_region 306880 306880 0.999 - . logic_name=eponine scaffold_14 . biological_region 306893 306895 0.999 + . logic_name=eponine scaffold_14 . biological_region 306920 306923 0.999 - . logic_name=eponine scaffold_14 . biological_region 306983 306985 0.999 - . logic_name=eponine scaffold_14 . biological_region 307016 307022 0.999 - . logic_name=eponine scaffold_14 . biological_region 308183 308184 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 301242 302349 . + . ID=Physo131067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140065;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 301242 302349 . + . ID=Physo131067;Parent=Physo131067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 301242 301486 . + 0 ID=Physo131067;Parent=Physo131067;rank=1 scaffold_14 . exon 301242 301486 . + . ID=Physo131067.1;Parent=Physo131067;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 301548 301908 . + 0 ID=Physo131067;Parent=Physo131067;rank=2 scaffold_14 . exon 301548 301908 . + . ID=Physo131067.2;Parent=Physo131067;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 301978 302349 . + 0 ID=Physo131067;Parent=Physo131067;rank=3 scaffold_14 . exon 301978 302349 . + . ID=Physo131067.3;Parent=Physo131067;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 307203 307640 . - . ID=Physo131068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140066;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 307203 307640 . - . ID=Physo131068;Parent=Physo131068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 307203 307640 . - 0 ID=Physo131068;Parent=Physo131068;rank=1 scaffold_14 . exon 307203 307640 . - . ID=Physo131068.1;Parent=Physo131068;constitutive=1;rank=1 scaffold_14 . repeat_region 319444 319585 . ? . description=trf scaffold_14 . repeat_region 319444 319587 . + . description=(CTAAA)n scaffold_14 ensembl protein_coding_gene 310668 311543 . - . ID=Physo131069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140067;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 310668 311543 . - . ID=Physo131069;Parent=Physo131069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 310668 311543 . - 0 ID=Physo131069;Parent=Physo131069;rank=1 scaffold_14 . exon 310668 311543 . - . ID=Physo131069.1;Parent=Physo131069;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 312768 315129 . - . ID=Physo131070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140068;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 312768 315129 . - . ID=Physo131070;Parent=Physo131070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 312768 313253 . - 0 ID=Physo131070;Parent=Physo131070;rank=6 scaffold_14 . exon 312768 313253 . - . ID=Physo131070.6;Parent=Physo131070;constitutive=1;rank=6 scaffold_14 . CDS 313362 313625 . - 0 ID=Physo131070;Parent=Physo131070;rank=5 scaffold_14 . exon 313362 313625 . - . ID=Physo131070.5;Parent=Physo131070;constitutive=1;rank=5 scaffold_14 . CDS 313725 314146 . - 0 ID=Physo131070;Parent=Physo131070;rank=4 scaffold_14 . exon 313725 314146 . - . ID=Physo131070.4;Parent=Physo131070;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 314207 314542 . - 0 ID=Physo131070;Parent=Physo131070;rank=3 scaffold_14 . exon 314207 314542 . - . ID=Physo131070.3;Parent=Physo131070;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 314585 314879 . - 0 ID=Physo131070;Parent=Physo131070;rank=2 scaffold_14 . exon 314585 314879 . - . ID=Physo131070.2;Parent=Physo131070;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 315073 315129 . - 0 ID=Physo131070;Parent=Physo131070;rank=1 scaffold_14 . exon 315073 315129 . - . ID=Physo131070.1;Parent=Physo131070;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 316049 317014 . - . ID=Physo131071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140069;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 316049 317014 . - . ID=Physo131071;Parent=Physo131071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 316049 316652 . - 0 ID=Physo131071;Parent=Physo131071;rank=3 scaffold_14 . exon 316049 316652 . - . ID=Physo131071.3;Parent=Physo131071;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 316699 316850 . - 0 ID=Physo131071;Parent=Physo131071;rank=2 scaffold_14 . exon 316699 316850 . - . ID=Physo131071.2;Parent=Physo131071;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 316883 317014 . - 0 ID=Physo131071;Parent=Physo131071;rank=1 scaffold_14 . exon 316883 317014 . - . ID=Physo131071.1;Parent=Physo131071;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 317673 318698 . - . ID=Physo131072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140070;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 317673 318698 . - . ID=Physo131072;Parent=Physo131072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 317673 318698 . - 0 ID=Physo131072;Parent=Physo131072;rank=1 scaffold_14 . exon 317673 318698 . - . ID=Physo131072.1;Parent=Physo131072;constitutive=1;rank=1 scaffold_14 . repeat_region 319444 319585 . ? . description=dust scaffold_14 . repeat_region 321180 322817 . ? . description=dust scaffold_14 . repeat_region 322818 337474 . ? . description=dust scaffold_14 . biological_region 337880 337880 0.999 + . logic_name=eponine scaffold_14 . biological_region 337990 337993 0.999 - . logic_name=eponine scaffold_14 . biological_region 338692 338696 0.999 + . logic_name=eponine scaffold_14 . biological_region 338731 338732 0.999 + . logic_name=eponine scaffold_14 . biological_region 338753 338759 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 337651 339081 . + . ID=Physo131073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140071;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 337651 339081 . + . ID=Physo131073;Parent=Physo131073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 337651 338262 . + 0 ID=Physo131073;Parent=Physo131073;rank=1 scaffold_14 . exon 337651 338262 . + . ID=Physo131073.1;Parent=Physo131073;constitutive=1;rank=1 scaffold_14 . CDS 338448 338951 . + 0 ID=Physo131073;Parent=Physo131073;rank=2 scaffold_14 . exon 338448 338951 . + . ID=Physo131073.2;Parent=Physo131073;constitutive=1;rank=2 scaffold_14 . CDS 339010 339081 . + 0 ID=Physo131073;Parent=Physo131073;rank=3 scaffold_14 . exon 339010 339081 . + . ID=Physo131073.3;Parent=Physo131073;constitutive=1;rank=3 scaffold_14 . repeat_region 339575 339591 . ? . description=dust scaffold_14 . repeat_region 340706 346452 . + . description=GypsyPi-1c_I-int scaffold_14 . repeat_region 342127 342444 . ? . description=trf scaffold_14 . repeat_region 342127 342514 . ? . description=trf scaffold_14 ensembl protein_coding_gene 340490 345463 . + . ID=Physo131074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140072;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 340490 345463 . + . ID=Physo131074;Parent=Physo131074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 340490 340793 . + 0 ID=Physo131074;Parent=Physo131074;rank=1 scaffold_14 . exon 340490 340793 . + . ID=Physo131074.1;Parent=Physo131074;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 340844 341105 . + 0 ID=Physo131074;Parent=Physo131074;rank=2 scaffold_14 . exon 340844 341105 . + . ID=Physo131074.2;Parent=Physo131074;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_14 . CDS 341141 341387 . + 0 ID=Physo131074;Parent=Physo131074;rank=3 scaffold_14 . exon 341141 341387 . + . ID=Physo131074.3;Parent=Physo131074;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 341650 341822 . + 0 ID=Physo131074;Parent=Physo131074;rank=4 scaffold_14 . exon 341650 341822 . + . ID=Physo131074.4;Parent=Physo131074;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_14 . CDS 341999 343099 . + 0 ID=Physo131074;Parent=Physo131074;rank=5 scaffold_14 . exon 341999 343099 . + . ID=Physo131074.5;Parent=Physo131074;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 343203 344342 . + 0 ID=Physo131074;Parent=Physo131074;rank=6 scaffold_14 . exon 343203 344342 . + . ID=Physo131074.6;Parent=Physo131074;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_14 . CDS 344375 345390 . + 0 ID=Physo131074;Parent=Physo131074;rank=7 scaffold_14 . exon 344375 345390 . + . ID=Physo131074.7;Parent=Physo131074;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_14 . CDS 345459 345463 . + 0 ID=Physo131074;Parent=Physo131074;rank=8 scaffold_14 . exon 345459 345463 . + . ID=Physo131074.8;Parent=Physo131074;constitutive=1;ensembl_phase=1;rank=8 scaffold_14 ensembl protein_coding_gene 345769 347850 . - . ID=Physo131075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140073;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 345769 347850 . - . ID=Physo131075;Parent=Physo131075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 345769 347850 . - 0 ID=Physo131075;Parent=Physo131075;rank=1 scaffold_14 . exon 345769 347850 . - . ID=Physo131075.1;Parent=Physo131075;constitutive=1;rank=1 scaffold_14 . biological_region 350392 350395 0.999 - . logic_name=eponine scaffold_14 . biological_region 350447 350451 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 352300 352944 . + . ID=Physo131076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140074;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 352300 352944 . + . ID=Physo131076;Parent=Physo131076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 352300 352944 . + 0 ID=Physo131076;Parent=Physo131076;rank=1 scaffold_14 . exon 352300 352944 . + . ID=Physo131076.1;Parent=Physo131076;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 354115 356565 . - . ID=Physo131077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140075;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 354115 356565 . - . ID=Physo131077;Parent=Physo131077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 354115 356565 . - 0 ID=Physo131077;Parent=Physo131077;rank=1 scaffold_14 . exon 354115 356565 . - . ID=Physo131077.1;Parent=Physo131077;constitutive=1;rank=1 scaffold_14 . repeat_region 359773 359780 . ? . description=dust scaffold_14 . repeat_region 368650 368657 . ? . description=dust scaffold_14 ensembl protein_coding_gene 359890 361496 . + . ID=Physo131078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140076;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 359890 361496 . + . ID=Physo131078;Parent=Physo131078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 359890 360172 . + 0 ID=Physo131078;Parent=Physo131078;rank=1 scaffold_14 . exon 359890 360172 . + . ID=Physo131078.1;Parent=Physo131078;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 360791 360982 . + 0 ID=Physo131078;Parent=Physo131078;rank=2 scaffold_14 . exon 360791 360982 . + . ID=Physo131078.2;Parent=Physo131078;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 361141 361496 . + 0 ID=Physo131078;Parent=Physo131078;rank=3 scaffold_14 . exon 361141 361496 . + . ID=Physo131078.3;Parent=Physo131078;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 ensembl protein_coding_gene 363167 364854 . + . ID=Physo131079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140077;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 363167 364854 . + . ID=Physo131079;Parent=Physo131079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 363167 363439 . + 0 ID=Physo131079;Parent=Physo131079;rank=1 scaffold_14 . exon 363167 363439 . + . ID=Physo131079.1;Parent=Physo131079;constitutive=1;rank=1 scaffold_14 . CDS 363469 364854 . + 0 ID=Physo131079;Parent=Physo131079;rank=2 scaffold_14 . exon 363469 364854 . + . ID=Physo131079.2;Parent=Physo131079;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 366262 368184 . - . ID=Physo131080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140078;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 366262 368184 . - . ID=Physo131080;Parent=Physo131080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 366262 368184 . - 0 ID=Physo131080;Parent=Physo131080;rank=1 scaffold_14 . exon 366262 368184 . - . ID=Physo131080.1;Parent=Physo131080;constitutive=1;rank=1 scaffold_14 . biological_region 370283 370285 0.999 - . logic_name=eponine scaffold_14 . biological_region 371047 371050 0.999 - . logic_name=eponine scaffold_14 . biological_region 371075 371076 0.999 - . logic_name=eponine scaffold_14 . biological_region 371131 371136 0.999 + . logic_name=eponine scaffold_14 . biological_region 371892 371897 0.999 + . logic_name=eponine scaffold_14 . biological_region 371909 371916 0.999 + . logic_name=eponine scaffold_14 . biological_region 371922 371924 0.999 - . logic_name=eponine scaffold_14 . biological_region 371947 371951 0.999 - . logic_name=eponine scaffold_14 . biological_region 373190 373193 0.999 + . logic_name=eponine scaffold_14 . repeat_region 374034 374053 . ? . description=trf scaffold_14 . biological_region 374124 374128 0.999 + . logic_name=eponine scaffold_14 . biological_region 374145 374147 0.999 + . logic_name=eponine scaffold_14 . biological_region 376828 376833 0.999 - . logic_name=eponine scaffold_14 . biological_region 376952 376954 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 369757 372069 . - . ID=Physo131081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140079;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 369757 372069 . - . ID=Physo131081;Parent=Physo131081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 369757 370388 . - 0 ID=Physo131081;Parent=Physo131081;rank=3 scaffold_14 . exon 369757 370388 . - . ID=Physo131081.3;Parent=Physo131081;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 370460 370505 . - 0 ID=Physo131081;Parent=Physo131081;rank=2 scaffold_14 . exon 370460 370505 . - . ID=Physo131081.2;Parent=Physo131081;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 370591 372069 . - 0 ID=Physo131081;Parent=Physo131081;rank=1 scaffold_14 . exon 370591 372069 . - . ID=Physo131081.1;Parent=Physo131081;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 373126 374246 . - . ID=Physo131082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140080;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 373126 374246 . - . ID=Physo131082;Parent=Physo131082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 373126 373337 . - 0 ID=Physo131082;Parent=Physo131082;rank=4 scaffold_14 . exon 373126 373337 . - . ID=Physo131082.4;Parent=Physo131082;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 373411 373554 . - 0 ID=Physo131082;Parent=Physo131082;rank=3 scaffold_14 . exon 373411 373554 . - . ID=Physo131082.3;Parent=Physo131082;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 373629 374025 . - 0 ID=Physo131082;Parent=Physo131082;rank=2 scaffold_14 . exon 373629 374025 . - . ID=Physo131082.2;Parent=Physo131082;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_14 . CDS 374115 374246 . - 0 ID=Physo131082;Parent=Physo131082;rank=1 scaffold_14 . exon 374115 374246 . - . ID=Physo131082.1;Parent=Physo131082;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 375279 376145 . + . ID=Physo131083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140081;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 375279 376145 . + . ID=Physo131083;Parent=Physo131083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 375279 376145 . + 0 ID=Physo131083;Parent=Physo131083;rank=1 scaffold_14 . exon 375279 376145 . + . ID=Physo131083.1;Parent=Physo131083;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 376553 377543 . + . ID=Physo131084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140082;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 376553 377543 . + . ID=Physo131084;Parent=Physo131084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 376553 377419 . + 0 ID=Physo131084;Parent=Physo131084;rank=1 scaffold_14 . exon 376553 377543 . + . ID=Physo131084.1;Parent=Physo131084;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 378006 379181 . - . ID=Physo131085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140083;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 378006 379181 . - . ID=Physo131085;Parent=Physo131085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 378006 379181 . - 0 ID=Physo131085;Parent=Physo131085;rank=1 scaffold_14 . exon 378006 379181 . - . ID=Physo131085.1;Parent=Physo131085;constitutive=1;rank=1 scaffold_14 . repeat_region 382443 382450 . ? . description=dust scaffold_14 . repeat_region 383014 383047 . ? . description=dust scaffold_14 . repeat_region 388226 388233 . ? . description=dust scaffold_14 . repeat_region 388386 388435 . ? . description=dust scaffold_14 ensembl protein_coding_gene 385833 390196 . + . ID=Physo108524;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140004;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 385833 390196 . + . ID=Physo108524;Parent=Physo108524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 385833 386316 . + . ID=Physo108524.1;Parent=Physo108524;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_14 . exon 386340 386937 . + . ID=Physo108524.2;Parent=Physo108524;constitutive=1;ensembl_phase=-1;rank=2 scaffold_14 . CDS 386431 386937 . + 0 ID=Physo108524;Parent=Physo108524;rank=1 scaffold_14 . CDS 389674 390195 . + 0 ID=Physo108524;Parent=Physo108524;rank=2 scaffold_14 ensembl protein_coding_gene 383276 385730 . + . ID=Physo131086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140084;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 383276 385730 . + . ID=Physo131086;Parent=Physo131086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 383276 383295 . + 0 ID=Physo131086;Parent=Physo131086;rank=1 scaffold_14 . exon 383276 383295 . + . ID=Physo131086.1;Parent=Physo131086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 383454 384526 . + 0 ID=Physo131086;Parent=Physo131086;rank=2 scaffold_14 . exon 383454 384526 . + . ID=Physo131086.2;Parent=Physo131086;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 384571 385536 . + 0 ID=Physo131086;Parent=Physo131086;rank=3 scaffold_14 . exon 384571 385536 . + . ID=Physo131086.3;Parent=Physo131086;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 385672 385730 . + 0 ID=Physo131086;Parent=Physo131086;rank=4 scaffold_14 . exon 385672 385730 . + . ID=Physo131086.4;Parent=Physo131086;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . repeat_region 389336 389387 . ? . description=trf scaffold_14 . biological_region 389388 389397 0.999 - . logic_name=eponine scaffold_14 . biological_region 389557 389560 0.999 + . logic_name=eponine scaffold_14 . biological_region 389614 389619 0.999 - . logic_name=eponine scaffold_14 . biological_region 389637 389644 0.999 - . logic_name=eponine scaffold_14 . biological_region 389661 389668 0.999 - . logic_name=eponine scaffold_14 . biological_region 389694 389696 0.999 + . logic_name=eponine scaffold_14 . biological_region 389721 389725 0.999 + . logic_name=eponine scaffold_14 . repeat_region 392873 393178 . - . description=GypsyPi-1c_LTR scaffold_14 . repeat_region 394311 394446 . ? . description=trf scaffold_14 . repeat_region 395111 397307 . - . description=GypsyPi-1c_I-int scaffold_14 . repeat_region 395133 395306 . ? . description=trf scaffold_14 . repeat_region 395133 395378 . ? . description=trf scaffold_14 . repeat_region 397308 397613 . - . description=GypsyPi-1c_LTR scaffold_14 . biological_region 399254 399258 0.999 + . logic_name=eponine scaffold_14 . exon 389674 390196 . + . ID=Physo108524.3;Parent=Physo108524;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_14 ensembl protein_coding_gene 392507 392817 . - . ID=Physo131089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140087;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 392507 392817 . - . ID=Physo131089;Parent=Physo131089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 392507 392815 . - 0 ID=Physo131089;Parent=Physo131089;rank=1 scaffold_14 . exon 392507 392817 . - . ID=Physo131089.1;Parent=Physo131089;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 396255 397220 . - . ID=Physo131090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140088;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 396255 397220 . - . ID=Physo131090;Parent=Physo131090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 396255 397220 . - 0 ID=Physo131090;Parent=Physo131090;rank=1 scaffold_14 . exon 396255 397220 . - . ID=Physo131090.1;Parent=Physo131090;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 397609 397947 . - . ID=Physo131091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140089;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 397609 397947 . - . ID=Physo131091;Parent=Physo131091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 397609 397947 . - 0 ID=Physo131091;Parent=Physo131091;rank=1 scaffold_14 . exon 397609 397947 . - . ID=Physo131091.1;Parent=Physo131091;constitutive=1;rank=1 scaffold_14 . repeat_region 404203 404210 . ? . description=dust scaffold_14 . repeat_region 406259 406269 . ? . description=dust scaffold_14 ensembl protein_coding_gene 401026 404423 . + . ID=Physo131092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140090;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 401026 404423 . + . ID=Physo131092;Parent=Physo131092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 401026 401287 . + 0 ID=Physo131092;Parent=Physo131092;rank=1 scaffold_14 . exon 401026 401287 . + . ID=Physo131092.1;Parent=Physo131092;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 401480 402539 . + 0 ID=Physo131092;Parent=Physo131092;rank=2 scaffold_14 . exon 401480 402539 . + . ID=Physo131092.2;Parent=Physo131092;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_14 . CDS 402624 404337 . + 0 ID=Physo131092;Parent=Physo131092;rank=3 scaffold_14 . exon 402624 404337 . + . ID=Physo131092.3;Parent=Physo131092;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 404412 404423 . + 0 ID=Physo131092;Parent=Physo131092;rank=4 scaffold_14 . exon 404412 404423 . + . ID=Physo131092.4;Parent=Physo131092;constitutive=1;rank=4 scaffold_14 ensembl protein_coding_gene 405746 406159 . - . ID=Physo131093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140091;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 405746 406159 . - . ID=Physo131093;Parent=Physo131093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 405746 406159 . - 0 ID=Physo131093;Parent=Physo131093;rank=1 scaffold_14 . exon 405746 406159 . - . ID=Physo131093.1;Parent=Physo131093;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 408009 412102 . - . ID=Physo131094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140092;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 408009 412102 . - . ID=Physo131094;Parent=Physo131094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 408009 409822 . - 0 ID=Physo131094;Parent=Physo131094;rank=2 scaffold_14 . exon 408009 409822 . - . ID=Physo131094.2;Parent=Physo131094;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 410014 412102 . - 0 ID=Physo131094;Parent=Physo131094;rank=1 scaffold_14 . biological_region 410923 410924 0.999 + . logic_name=eponine scaffold_14 . biological_region 411616 411620 0.999 - . logic_name=eponine scaffold_14 . biological_region 413683 413683 0.999 + . logic_name=eponine scaffold_14 . biological_region 415564 415566 0.999 + . logic_name=eponine scaffold_14 . biological_region 415623 415623 0.999 - . logic_name=eponine scaffold_14 . repeat_region 415680 415748 . ? . description=trf scaffold_14 . repeat_region 415774 415803 . ? . description=trf scaffold_14 . biological_region 415889 415891 0.999 - . logic_name=eponine scaffold_14 . biological_region 415910 415918 0.999 - . logic_name=eponine scaffold_14 . biological_region 415933 415936 0.999 - . logic_name=eponine scaffold_14 . biological_region 415962 415963 0.999 - . logic_name=eponine scaffold_14 . biological_region 416000 416005 0.999 - . logic_name=eponine scaffold_14 . exon 410014 412102 . - . ID=Physo131094.1;Parent=Physo131094;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 413449 414348 . + . ID=Physo131095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140093;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 413449 414348 . + . ID=Physo131095;Parent=Physo131095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 413449 414348 . + 0 ID=Physo131095;Parent=Physo131095;rank=1 scaffold_14 . exon 413449 414348 . + . ID=Physo131095.1;Parent=Physo131095;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 415603 417714 . + . ID=Physo131096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140094;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 415603 417714 . + . ID=Physo131096;Parent=Physo131096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 415603 417714 . + 0 ID=Physo131096;Parent=Physo131096;rank=1 scaffold_14 . exon 415603 417714 . + . ID=Physo131096.1;Parent=Physo131096;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 417914 420879 . - . ID=Physo131097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140095;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 417914 420879 . - . ID=Physo131097;Parent=Physo131097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 417914 418753 . - 0 ID=Physo131097;Parent=Physo131097;rank=4 scaffold_14 . exon 417914 418753 . - . ID=Physo131097.4;Parent=Physo131097;constitutive=1;rank=4 scaffold_14 . CDS 419116 419404 . - 0 ID=Physo131097;Parent=Physo131097;rank=3 scaffold_14 . exon 419116 419404 . - . ID=Physo131097.3;Parent=Physo131097;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 419620 419663 . - 0 ID=Physo131097;Parent=Physo131097;rank=2 scaffold_14 . CDS 420112 420879 . - 0 ID=Physo131097;Parent=Physo131097;rank=1 scaffold_14 . repeat_region 419506 419517 . ? . description=dust scaffold_14 . repeat_region 419945 419967 . ? . description=dust scaffold_14 . repeat_region 420001 420009 . ? . description=dust scaffold_14 . repeat_region 422572 422700 . + . description=(CTG)n scaffold_14 . repeat_region 423861 423868 . ? . description=dust scaffold_14 . exon 419620 419663 . - . ID=Physo131097.2;Parent=Physo131097;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . exon 420112 420879 . - . ID=Physo131097.1;Parent=Physo131097;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 425486 426106 . - . ID=Physo131098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140096;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 425486 426106 . - . ID=Physo131098;Parent=Physo131098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 425486 425759 . - 0 ID=Physo131098;Parent=Physo131098;rank=2 scaffold_14 . exon 425486 425759 . - . ID=Physo131098.2;Parent=Physo131098;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 425784 426106 . - 0 ID=Physo131098;Parent=Physo131098;rank=1 scaffold_14 . exon 425784 426106 . - . ID=Physo131098.1;Parent=Physo131098;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 428332 429174 . + . ID=Physo131099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140097;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 428332 429174 . + . ID=Physo131099;Parent=Physo131099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 428332 429174 . + 0 ID=Physo131099;Parent=Physo131099;rank=1 scaffold_14 . exon 428332 429174 . + . ID=Physo131099.1;Parent=Physo131099;constitutive=1;rank=1 scaffold_14 . biological_region 430194 430194 0.999 - . logic_name=eponine scaffold_14 . repeat_region 432698 432926 . + . description=Gypsy-2-I_PI-int scaffold_14 . repeat_region 433348 434660 . - . description=Gypsy-1-I_PI-int scaffold_14 . repeat_region 437405 437424 . ? . description=trf scaffold_14 . repeat_region 438955 438975 . ? . description=trf scaffold_14 ensembl protein_coding_gene 429453 430280 . + . ID=Physo131100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140098;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 429453 430280 . + . ID=Physo131100;Parent=Physo131100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 429453 430280 . + 0 ID=Physo131100;Parent=Physo131100;rank=1 scaffold_14 . exon 429453 430280 . + . ID=Physo131100.1;Parent=Physo131100;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 430813 431741 . + . ID=Physo131101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140099;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 430813 431741 . + . ID=Physo131101;Parent=Physo131101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 430813 431673 . + 0 ID=Physo131101;Parent=Physo131101;rank=1 scaffold_14 . exon 430813 431741 . + . ID=Physo131101.1;Parent=Physo131101;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_14 . repeat_region 439322 439329 . ? . description=dust scaffold_14 . repeat_region 440934 440941 . ? . description=dust scaffold_14 . repeat_region 442850 442857 . ? . description=dust scaffold_14 ensembl protein_coding_gene 439572 440297 . + . ID=Physo131102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140100;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 439572 440297 . + . ID=Physo131102;Parent=Physo131102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 439572 439988 . + 0 ID=Physo131102;Parent=Physo131102;rank=1 scaffold_14 . exon 439572 439988 . + . ID=Physo131102.1;Parent=Physo131102;constitutive=1;rank=1 scaffold_14 . CDS 440042 440163 . + 0 ID=Physo131102;Parent=Physo131102;rank=2 scaffold_14 . exon 440042 440163 . + . ID=Physo131102.2;Parent=Physo131102;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 440219 440297 . + 0 ID=Physo131102;Parent=Physo131102;rank=3 scaffold_14 . exon 440219 440297 . + . ID=Physo131102.3;Parent=Physo131102;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 ensembl protein_coding_gene 441906 442727 . - . ID=Physo131103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140101;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 441906 442727 . - . ID=Physo131103;Parent=Physo131103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 441906 442727 . - 0 ID=Physo131103;Parent=Physo131103;rank=1 scaffold_14 . exon 441906 442727 . - . ID=Physo131103.1;Parent=Physo131103;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 444505 445667 . - . ID=Physo131104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140102;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 444505 445667 . - . ID=Physo131104;Parent=Physo131104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 444505 444812 . - 0 ID=Physo131104;Parent=Physo131104;rank=3 scaffold_14 . exon 444505 444812 . - . ID=Physo131104.3;Parent=Physo131104;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 444864 445265 . - 0 ID=Physo131104;Parent=Physo131104;rank=2 scaffold_14 . exon 444864 445265 . - . ID=Physo131104.2;Parent=Physo131104;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 445634 445667 . - 0 ID=Physo131104;Parent=Physo131104;rank=1 scaffold_14 . exon 445634 445667 . - . ID=Physo131104.1;Parent=Physo131104;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 447393 450868 . + . ID=Physo131105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140103;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 447393 450868 . + . ID=Physo131105;Parent=Physo131105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 447393 447793 . + 0 ID=Physo131105;Parent=Physo131105;rank=1 scaffold_14 . exon 447393 447793 . + . ID=Physo131105.1;Parent=Physo131105;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 447923 448716 . + 0 ID=Physo131105;Parent=Physo131105;rank=2 scaffold_14 . exon 447923 448716 . + . ID=Physo131105.2;Parent=Physo131105;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 448813 448933 . + 0 ID=Physo131105;Parent=Physo131105;rank=3 scaffold_14 . exon 448813 448933 . + . ID=Physo131105.3;Parent=Physo131105;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_14 . CDS 448990 450868 . + 0 ID=Physo131105;Parent=Physo131105;rank=4 scaffold_14 . exon 448990 450868 . + . ID=Physo131105.4;Parent=Physo131105;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 . repeat_region 453517 453540 . ? . description=trf scaffold_14 . biological_region 458378 458381 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 457905 459839 . + . ID=Physo131106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140104;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 457905 459839 . + . ID=Physo131106;Parent=Physo131106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 457905 458121 . + 0 ID=Physo131106;Parent=Physo131106;rank=1 scaffold_14 . exon 457905 458121 . + . ID=Physo131106.1;Parent=Physo131106;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 458209 459839 . + 0 ID=Physo131106;Parent=Physo131106;rank=2 scaffold_14 . exon 458209 459839 . + . ID=Physo131106.2;Parent=Physo131106;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 461457 463804 . + . ID=Physo131107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140105;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 461457 463804 . + . ID=Physo131107;Parent=Physo131107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 461457 461973 . + 0 ID=Physo131107;Parent=Physo131107;rank=1 scaffold_14 . exon 461457 461973 . + . ID=Physo131107.1;Parent=Physo131107;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 462663 462896 . + 0 ID=Physo131107;Parent=Physo131107;rank=2 scaffold_14 . exon 462663 462896 . + . ID=Physo131107.2;Parent=Physo131107;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 463104 463804 . + 0 ID=Physo131107;Parent=Physo131107;rank=3 scaffold_14 . exon 463104 463804 . + . ID=Physo131107.3;Parent=Physo131107;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . repeat_region 469574 469633 . ? . description=trf scaffold_14 . repeat_region 471703 471716 . ? . description=dust scaffold_14 . repeat_region 471916 471923 . ? . description=dust scaffold_14 . repeat_region 478776 478883 . ? . description=trf scaffold_14 ensembl protein_coding_gene 470901 471131 . - . ID=Physo113349;biotype=protein_coding;external_name=estExt_Genewise1.C_140017;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 470901 471131 . - . ID=Physo113349;Parent=Physo113349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 470901 471131 . - 0 ID=Physo113349;Parent=Physo113349;rank=1 scaffold_14 . exon 470901 471131 . - . ID=Physo113349.1;Parent=Physo113349;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 473753 473986 . - . ID=Physo113350;biotype=protein_coding;external_name=estExt_Genewise1.C_140018;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 473753 473986 . - . ID=Physo113350;Parent=Physo113350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 473753 473986 . - 0 ID=Physo113350;Parent=Physo113350;rank=1 scaffold_14 . exon 473753 473986 . - . ID=Physo113350.1;Parent=Physo113350;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 476829 477342 . - . ID=Physo131108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140106;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 476829 477342 . - . ID=Physo131108;Parent=Physo131108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 476829 476865 . - 0 ID=Physo131108;Parent=Physo131108;rank=2 scaffold_14 . exon 476829 476865 . - . ID=Physo131108.2;Parent=Physo131108;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 476888 477342 . - 0 ID=Physo131108;Parent=Physo131108;rank=1 scaffold_14 . exon 476888 477342 . - . ID=Physo131108.1;Parent=Physo131108;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 477853 478780 . + . ID=Physo131109;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140107;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 477853 478780 . + . ID=Physo131109;Parent=Physo131109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 477853 478780 . + . ID=Physo131109.1;Parent=Physo131109;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 477863 478627 . + 0 ID=Physo131109;Parent=Physo131109;rank=1 scaffold_14 . biological_region 483932 483933 0.999 - . logic_name=eponine scaffold_14 . biological_region 484093 484099 0.999 + . logic_name=eponine scaffold_14 . biological_region 484207 484210 0.999 - . logic_name=eponine scaffold_14 . biological_region 484275 484276 0.999 - . logic_name=eponine scaffold_14 . biological_region 484289 484290 0.999 - . logic_name=eponine scaffold_14 . biological_region 484330 484333 0.999 - . logic_name=eponine scaffold_14 . biological_region 484377 484384 0.999 - . logic_name=eponine scaffold_14 . biological_region 485602 485605 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 489176 489436 . + . ID=Physo113354;biotype=protein_coding;external_name=estExt_Genewise1.C_140022;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 489176 489436 . + . ID=Physo113354;Parent=Physo113354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 489176 489436 . + . ID=Physo113354.1;Parent=Physo113354;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 489218 489436 . + 0 ID=Physo113354;Parent=Physo113354;rank=1 scaffold_14 ensembl protein_coding_gene 481500 482325 . + . ID=Physo131110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140108;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 481500 482325 . + . ID=Physo131110;Parent=Physo131110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 481500 481628 . + 0 ID=Physo131110;Parent=Physo131110;rank=1 scaffold_14 . exon 481500 481628 . + . ID=Physo131110.1;Parent=Physo131110;constitutive=1;rank=1 scaffold_14 . CDS 481663 482295 . + 0 ID=Physo131110;Parent=Physo131110;rank=2 scaffold_14 . exon 481663 482325 . + . ID=Physo131110.2;Parent=Physo131110;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_14 ensembl protein_coding_gene 483755 485677 . + . ID=Physo131111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140109;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 483755 485677 . + . ID=Physo131111;Parent=Physo131111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 483755 485677 . + 0 ID=Physo131111;Parent=Physo131111;rank=1 scaffold_14 . exon 483755 485677 . + . ID=Physo131111.1;Parent=Physo131111;constitutive=1;rank=1 scaffold_14 . repeat_region 493830 493986 . ? . description=trf scaffold_14 ensembl protein_coding_gene 495391 495630 . - . ID=Physo113356;biotype=protein_coding;external_name=estExt_Genewise1.C_140024;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 495391 495630 . - . ID=Physo113356;Parent=Physo113356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 495391 495630 . - 0 ID=Physo113356;Parent=Physo113356;rank=1 scaffold_14 . exon 495391 495630 . - . ID=Physo113356.1;Parent=Physo113356;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 497131 498321 . - . ID=Physo131112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140110;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 497131 498321 . - . ID=Physo131112;Parent=Physo131112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 497131 498318 . - 0 ID=Physo131112;Parent=Physo131112;rank=1 scaffold_14 . exon 497131 498321 . - . ID=Physo131112.1;Parent=Physo131112;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . repeat_region 502872 502882 . ? . description=dust scaffold_14 . biological_region 507488 507489 0.999 - . logic_name=eponine scaffold_14 . repeat_region 508436 508443 . ? . description=dust scaffold_14 ensembl protein_coding_gene 499232 500478 . + . ID=Physo131113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140111;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 499232 500478 . + . ID=Physo131113;Parent=Physo131113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 499232 500478 . + . ID=Physo131113.1;Parent=Physo131113;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 499288 500478 . + 0 ID=Physo131113;Parent=Physo131113;rank=1 scaffold_14 . repeat_region 511807 511838 . ? . description=trf scaffold_14 . repeat_region 512787 512808 . ? . description=trf scaffold_14 . repeat_region 517328 517366 . ? . description=trf scaffold_14 . repeat_region 518021 518053 . ? . description=trf scaffold_14 ensembl protein_coding_gene 512168 515606 . - . ID=Physo131114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140112;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 512168 515606 . - . ID=Physo131114;Parent=Physo131114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 512168 512651 . - 0 ID=Physo131114;Parent=Physo131114;rank=10 scaffold_14 . exon 512168 512651 . - . ID=Physo131114.10;Parent=Physo131114;constitutive=1;ensembl_phase=2;rank=10 scaffold_14 . CDS 512700 512755 . - 0 ID=Physo131114;Parent=Physo131114;rank=9 scaffold_14 . exon 512700 512755 . - . ID=Physo131114.9;Parent=Physo131114;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_14 . CDS 512781 512906 . - 0 ID=Physo131114;Parent=Physo131114;rank=8 scaffold_14 . exon 512781 512906 . - . ID=Physo131114.8;Parent=Physo131114;constitutive=1;rank=8 scaffold_14 . CDS 513002 513112 . - 0 ID=Physo131114;Parent=Physo131114;rank=7 scaffold_14 . exon 513002 513112 . - . ID=Physo131114.7;Parent=Physo131114;constitutive=1;rank=7 scaffold_14 . CDS 513142 513240 . - 0 ID=Physo131114;Parent=Physo131114;rank=6 scaffold_14 . exon 513142 513240 . - . ID=Physo131114.6;Parent=Physo131114;constitutive=1;rank=6 scaffold_14 . CDS 513262 513529 . - 0 ID=Physo131114;Parent=Physo131114;rank=5 scaffold_14 . exon 513262 513529 . - . ID=Physo131114.5;Parent=Physo131114;constitutive=1;ensembl_phase=2;rank=5 scaffold_14 . CDS 513562 513794 . - 0 ID=Physo131114;Parent=Physo131114;rank=4 scaffold_14 . exon 513562 513794 . - . ID=Physo131114.4;Parent=Physo131114;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_14 . CDS 513853 514441 . - 0 ID=Physo131114;Parent=Physo131114;rank=3 scaffold_14 . exon 513853 514441 . - . ID=Physo131114.3;Parent=Physo131114;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 514680 515383 . - 0 ID=Physo131114;Parent=Physo131114;rank=2 scaffold_14 . exon 514680 515383 . - . ID=Physo131114.2;Parent=Physo131114;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 515430 515606 . - 0 ID=Physo131114;Parent=Physo131114;rank=1 scaffold_14 . exon 515430 515606 . - . ID=Physo131114.1;Parent=Physo131114;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 518184 519748 . - . ID=Physo131115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140113;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 518184 519748 . - . ID=Physo131115;Parent=Physo131115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 518184 519260 . - 0 ID=Physo131115;Parent=Physo131115;rank=1 scaffold_14 . exon 518184 519401 . - . ID=Physo131115.3;Parent=Physo131115;constitutive=1;ensembl_phase=-1;rank=3 scaffold_14 ensembl protein_coding_gene 526862 527201 . + . ID=Physo108525;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140005;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 526862 527201 . + . ID=Physo108525;Parent=Physo108525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 526862 527136 . + 0 ID=Physo108525;Parent=Physo108525;rank=1 scaffold_14 . exon 526862 527136 . + . ID=Physo108525.1;Parent=Physo108525;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 527156 527201 . + 0 ID=Physo108525;Parent=Physo108525;rank=2 scaffold_14 . exon 527156 527201 . + . ID=Physo108525.2;Parent=Physo108525;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . exon 519460 519475 . - . ID=Physo131115.2;Parent=Physo131115;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_14 . exon 519545 519748 . - . ID=Physo131115.1;Parent=Physo131115;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 521761 522990 . + . ID=Physo131116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140114;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 521761 522990 . + . ID=Physo131116;Parent=Physo131116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 521761 522990 . + . ID=Physo131116.1;Parent=Physo131116;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 521818 522990 . + 0 ID=Physo131116;Parent=Physo131116;rank=1 scaffold_14 ensembl protein_coding_gene 523298 524273 . + . ID=Physo131117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140115;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 523298 524273 . + . ID=Physo131117;Parent=Physo131117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 523298 523758 . + 0 ID=Physo131117;Parent=Physo131117;rank=1 scaffold_14 . exon 523298 523758 . + . ID=Physo131117.1;Parent=Physo131117;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 523895 524273 . + 0 ID=Physo131117;Parent=Physo131117;rank=2 scaffold_14 . exon 523895 524273 . + . ID=Physo131117.2;Parent=Physo131117;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 528884 529594 . + . ID=Physo131119;biotype=protein_coding;description=PsAvh173 [Source:UniProtKB/TrEMBL%3BAcc:E0W4T2];external_name=estExt_fgenesh1_pg.C_140117;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 528884 529594 . + . ID=Physo131119;Parent=Physo131119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 528884 529594 . + 0 ID=Physo131119;Parent=Physo131119;rank=1 scaffold_14 . exon 528884 529594 . + . ID=Physo131119.1;Parent=Physo131119;constitutive=1;rank=1 scaffold_14 . repeat_region 529705 529713 . ? . description=dust scaffold_14 . repeat_region 530716 530743 . ? . description=trf scaffold_14 . biological_region 534462 534467 0.999 + . logic_name=eponine scaffold_14 . biological_region 534482 534484 0.999 + . logic_name=eponine scaffold_14 . repeat_region 534688 534699 . ? . description=dust scaffold_14 . repeat_region 535079 535086 . ? . description=dust scaffold_14 . repeat_region 537247 537266 . ? . description=trf scaffold_14 . repeat_region 537396 537427 . ? . description=trf scaffold_14 . biological_region 538067 538072 0.999 + . logic_name=eponine scaffold_14 . biological_region 538089 538092 0.999 + . logic_name=eponine scaffold_14 . repeat_region 538114 538123 . ? . description=dust scaffold_14 . biological_region 538211 538213 0.999 - . logic_name=eponine scaffold_14 . biological_region 538336 538339 0.999 + . logic_name=eponine scaffold_14 . biological_region 538592 538596 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 529755 530711 . - . ID=Physo131120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140118;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 529755 530711 . - . ID=Physo131120;Parent=Physo131120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 529755 530711 . - 0 ID=Physo131120;Parent=Physo131120;rank=1 scaffold_14 . exon 529755 530711 . - . ID=Physo131120.1;Parent=Physo131120;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 531090 532380 . + . ID=Physo131121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140119;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 531090 532380 . + . ID=Physo131121;Parent=Physo131121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 531090 531579 . + 0 ID=Physo131121;Parent=Physo131121;rank=1 scaffold_14 . exon 531090 531579 . + . ID=Physo131121.1;Parent=Physo131121;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 531684 532210 . + 0 ID=Physo131121;Parent=Physo131121;rank=2 scaffold_14 . exon 531684 532210 . + . ID=Physo131121.2;Parent=Physo131121;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 532279 532380 . + 0 ID=Physo131121;Parent=Physo131121;rank=3 scaffold_14 . exon 532279 532380 . + . ID=Physo131121.3;Parent=Physo131121;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 532508 534757 . - . ID=Physo131122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140120;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 532508 534757 . - . ID=Physo131122;Parent=Physo131122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 532508 534638 . - 0 ID=Physo131122;Parent=Physo131122;rank=2 scaffold_14 . exon 532508 534638 . - . ID=Physo131122.2;Parent=Physo131122;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 534717 534757 . - 0 ID=Physo131122;Parent=Physo131122;rank=1 scaffold_14 . exon 534717 534757 . - . ID=Physo131122.1;Parent=Physo131122;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 535196 535699 . + . ID=Physo131123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140121;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 535196 535699 . + . ID=Physo131123;Parent=Physo131123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 535196 535472 . + 0 ID=Physo131123;Parent=Physo131123;rank=1 scaffold_14 . exon 535196 535472 . + . ID=Physo131123.1;Parent=Physo131123;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 535578 535699 . + 0 ID=Physo131123;Parent=Physo131123;rank=2 scaffold_14 . exon 535578 535699 . + . ID=Physo131123.2;Parent=Physo131123;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 538094 539887 . + . ID=Physo131124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140122;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 538094 539887 . + . ID=Physo131124;Parent=Physo131124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 538094 539887 . + 0 ID=Physo131124;Parent=Physo131124;rank=1 scaffold_14 . exon 538094 539887 . + . ID=Physo131124.1;Parent=Physo131124;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 541214 542058 . - . ID=Physo131125;biotype=protein_coding;description=PsAvh174 [Source:UniProtKB/TrEMBL%3BAcc:E0W4T3];external_name=estExt_fgenesh1_pg.C_140123;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 541214 542058 . - . ID=Physo131125;Parent=Physo131125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 541214 541231 . - 0 ID=Physo131125;Parent=Physo131125;rank=2 scaffold_14 . exon 541214 541231 . - . ID=Physo131125.2;Parent=Physo131125;constitutive=1;rank=2 scaffold_14 . CDS 541453 542058 . - 0 ID=Physo131125;Parent=Physo131125;rank=1 scaffold_14 . exon 541453 542058 . - . ID=Physo131125.1;Parent=Physo131125;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 544542 547983 . + . ID=Physo131126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140124;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 544542 547983 . + . ID=Physo131126;Parent=Physo131126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 544542 544718 . + 0 ID=Physo131126;Parent=Physo131126;rank=1 scaffold_14 . exon 544542 544718 . + . ID=Physo131126.1;Parent=Physo131126;constitutive=1;rank=1 scaffold_14 . CDS 544765 545450 . + 0 ID=Physo131126;Parent=Physo131126;rank=2 scaffold_14 . exon 544765 545450 . + . ID=Physo131126.2;Parent=Physo131126;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 545470 546334 . + 0 ID=Physo131126;Parent=Physo131126;rank=3 scaffold_14 . exon 545470 546334 . + . ID=Physo131126.3;Parent=Physo131126;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 546357 546589 . + 0 ID=Physo131126;Parent=Physo131126;rank=4 scaffold_14 . exon 546357 546589 . + . ID=Physo131126.4;Parent=Physo131126;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_14 . CDS 546622 546889 . + 0 ID=Physo131126;Parent=Physo131126;rank=5 scaffold_14 . exon 546622 546889 . + . ID=Physo131126.5;Parent=Physo131126;constitutive=1;ensembl_phase=2;rank=5 scaffold_14 . CDS 546911 547009 . + 0 ID=Physo131126;Parent=Physo131126;rank=6 scaffold_14 . exon 546911 547009 . + . ID=Physo131126.6;Parent=Physo131126;constitutive=1;rank=6 scaffold_14 . CDS 547039 547149 . + 0 ID=Physo131126;Parent=Physo131126;rank=7 scaffold_14 . exon 547039 547149 . + . ID=Physo131126.7;Parent=Physo131126;constitutive=1;rank=7 scaffold_14 . CDS 547245 547355 . + 0 ID=Physo131126;Parent=Physo131126;rank=8 scaffold_14 . exon 547245 547355 . + . ID=Physo131126.8;Parent=Physo131126;constitutive=1;rank=8 scaffold_14 . CDS 547378 547451 . + 0 ID=Physo131126;Parent=Physo131126;rank=9 scaffold_14 . exon 547378 547451 . + . ID=Physo131126.9;Parent=Physo131126;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_14 . CDS 547500 547983 . + 0 ID=Physo131126;Parent=Physo131126;rank=10 scaffold_14 . exon 547500 547983 . + . ID=Physo131126.10;Parent=Physo131126;constitutive=1;ensembl_phase=2;rank=10 scaffold_14 . biological_region 553989 553991 0.999 - . logic_name=eponine scaffold_14 . biological_region 554044 554048 0.999 + . logic_name=eponine scaffold_14 . repeat_region 554636 554644 . ? . description=dust scaffold_14 . repeat_region 555344 555351 . ? . description=dust scaffold_14 . repeat_region 555592 555601 . ? . description=dust scaffold_14 . biological_region 557595 557597 0.999 + . logic_name=eponine scaffold_14 . biological_region 557951 557954 0.999 + . logic_name=eponine scaffold_14 . biological_region 558361 558365 0.999 - . logic_name=eponine scaffold_14 . biological_region 558384 558387 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 555966 556550 . + . ID=Physo131127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140125;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 555966 556550 . + . ID=Physo131127;Parent=Physo131127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 555966 556550 . + 0 ID=Physo131127;Parent=Physo131127;rank=1 scaffold_14 . exon 555966 556550 . + . ID=Physo131127.1;Parent=Physo131127;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 556926 558596 . - . ID=Physo131128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140126;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 556926 558596 . - . ID=Physo131128;Parent=Physo131128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 556926 558596 . - 0 ID=Physo131128;Parent=Physo131128;rank=1 scaffold_14 . exon 556926 558596 . - . ID=Physo131128.1;Parent=Physo131128;constitutive=1;rank=1 scaffold_14 . repeat_region 559370 559413 . ? . description=trf scaffold_14 . repeat_region 560888 560934 . ? . description=trf scaffold_14 ensembl protein_coding_gene 562751 562987 . - . ID=Physo113367;biotype=protein_coding;external_name=estExt_Genewise1.C_140035;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 562751 562987 . - . ID=Physo113367;Parent=Physo113367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 562751 562987 . - 0 ID=Physo113367;Parent=Physo113367;rank=1 scaffold_14 . exon 562751 562987 . - . ID=Physo113367.1;Parent=Physo113367;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 563775 564200 . - . ID=Physo131129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140127;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 563775 564200 . - . ID=Physo131129;Parent=Physo131129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 563775 564200 . - 0 ID=Physo131129;Parent=Physo131129;rank=1 scaffold_14 . exon 563775 564200 . - . ID=Physo131129.1;Parent=Physo131129;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 564388 565215 . - . ID=Physo131130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140128;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 564388 565215 . - . ID=Physo131130;Parent=Physo131130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 564388 565215 . - 0 ID=Physo131130;Parent=Physo131130;rank=1 scaffold_14 . exon 564388 565215 . - . ID=Physo131130.1;Parent=Physo131130;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 568405 569196 . - . ID=Physo131131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140129;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 568405 569196 . - . ID=Physo131131;Parent=Physo131131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 568405 569196 . - 0 ID=Physo131131;Parent=Physo131131;rank=1 scaffold_14 . exon 568405 569196 . - . ID=Physo131131.1;Parent=Physo131131;constitutive=1;rank=1 scaffold_14 . biological_region 569548 569551 0.999 - . logic_name=eponine scaffold_14 . repeat_region 570204 570212 . ? . description=dust scaffold_14 . biological_region 570606 570612 0.999 - . logic_name=eponine scaffold_14 . biological_region 570644 570646 0.999 + . logic_name=eponine scaffold_14 . biological_region 571882 571887 0.999 - . logic_name=eponine scaffold_14 . biological_region 575679 575680 0.999 + . logic_name=eponine scaffold_14 . biological_region 578754 578759 0.999 - . logic_name=eponine scaffold_14 . biological_region 578755 578756 0.999 + . logic_name=eponine scaffold_14 . biological_region 578765 578770 0.999 + . logic_name=eponine scaffold_14 . biological_region 578854 578857 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 571102 572241 . + . ID=Physo108526;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140006;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 571102 572241 . + . ID=Physo108526;Parent=Physo108526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 571102 572241 . + 0 ID=Physo108526;Parent=Physo108526;rank=1 scaffold_14 . exon 571102 572241 . + . ID=Physo108526.1;Parent=Physo108526;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 577256 579687 . + . ID=Physo131133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140131;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 577256 579687 . + . ID=Physo131133;Parent=Physo131133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 577256 577313 . + 0 ID=Physo131133;Parent=Physo131133;rank=1 scaffold_14 . exon 577256 577313 . + . ID=Physo131133.1;Parent=Physo131133;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 577578 577618 . + 0 ID=Physo131133;Parent=Physo131133;rank=2 scaffold_14 . exon 577578 577618 . + . ID=Physo131133.2;Parent=Physo131133;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 577695 578117 . + 0 ID=Physo131133;Parent=Physo131133;rank=3 scaffold_14 . exon 577695 578117 . + . ID=Physo131133.3;Parent=Physo131133;constitutive=1;rank=3 scaffold_14 . CDS 578187 578332 . + 0 ID=Physo131133;Parent=Physo131133;rank=4 scaffold_14 . exon 578187 578332 . + . ID=Physo131133.4;Parent=Physo131133;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_14 . CDS 578653 579516 . + 0 ID=Physo131133;Parent=Physo131133;rank=5 scaffold_14 . exon 578653 579516 . + . ID=Physo131133.5;Parent=Physo131133;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_14 . CDS 579669 579687 . + 0 ID=Physo131133;Parent=Physo131133;rank=6 scaffold_14 . repeat_region 586212 586252 . ? . description=trf scaffold_14 . exon 579669 579687 . + . ID=Physo131133.6;Parent=Physo131133;constitutive=1;ensembl_phase=2;rank=6 scaffold_14 ensembl protein_coding_gene 587244 588728 . + . ID=Physo131134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140132;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 587244 588728 . + . ID=Physo131134;Parent=Physo131134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 587244 587659 . + 0 ID=Physo131134;Parent=Physo131134;rank=1 scaffold_14 . exon 587244 587659 . + . ID=Physo131134.1;Parent=Physo131134;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 587726 588242 . + 0 ID=Physo131134;Parent=Physo131134;rank=2 scaffold_14 . exon 587726 588242 . + . ID=Physo131134.2;Parent=Physo131134;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 588416 588472 . + 0 ID=Physo131134;Parent=Physo131134;rank=3 scaffold_14 . exon 588416 588472 . + . ID=Physo131134.3;Parent=Physo131134;constitutive=1;rank=3 scaffold_14 . CDS 588537 588728 . + 0 ID=Physo131134;Parent=Physo131134;rank=4 scaffold_14 . exon 588537 588728 . + . ID=Physo131134.4;Parent=Physo131134;constitutive=1;rank=4 scaffold_14 ensembl protein_coding_gene 588981 594106 . - . ID=Physo131135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140133;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 588981 594106 . - . ID=Physo131135;Parent=Physo131135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 588981 588987 . - 0 ID=Physo131135;Parent=Physo131135;rank=8 scaffold_14 . exon 588981 588987 . - . ID=Physo131135.8;Parent=Physo131135;constitutive=1;ensembl_phase=2;rank=8 scaffold_14 . CDS 589028 589518 . - 0 ID=Physo131135;Parent=Physo131135;rank=7 scaffold_14 . exon 589028 589518 . - . ID=Physo131135.7;Parent=Physo131135;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_14 . CDS 589724 589822 . - 0 ID=Physo131135;Parent=Physo131135;rank=6 scaffold_14 . CDS 589915 591518 . - 0 ID=Physo131135;Parent=Physo131135;rank=5 scaffold_14 . CDS 591569 592276 . - 0 ID=Physo131135;Parent=Physo131135;rank=4 scaffold_14 . CDS 592331 592742 . - 0 ID=Physo131135;Parent=Physo131135;rank=3 scaffold_14 . CDS 592806 593020 . - 0 ID=Physo131135;Parent=Physo131135;rank=2 scaffold_14 . CDS 593611 594106 . - 0 ID=Physo131135;Parent=Physo131135;rank=1 scaffold_14 . repeat_region 589154 589176 . ? . description=dust scaffold_14 . repeat_region 589296 591690 . - . description=GypsyPi-1c_I-int scaffold_14 . biological_region 590173 590173 0.999 + . logic_name=eponine scaffold_14 . biological_region 592288 592291 0.999 - . logic_name=eponine scaffold_14 . biological_region 592715 592720 0.999 - . logic_name=eponine scaffold_14 . biological_region 597466 597468 0.999 + . logic_name=eponine scaffold_14 . exon 589724 589822 . - . ID=Physo131135.6;Parent=Physo131135;constitutive=1;rank=6 scaffold_14 . exon 589915 591518 . - . ID=Physo131135.5;Parent=Physo131135;constitutive=1;ensembl_phase=1;rank=5 scaffold_14 . exon 591569 592276 . - . ID=Physo131135.4;Parent=Physo131135;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_14 . exon 592331 592742 . - . ID=Physo131135.3;Parent=Physo131135;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_14 . exon 592806 593020 . - . ID=Physo131135.2;Parent=Physo131135;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . exon 593611 594106 . - . ID=Physo131135.1;Parent=Physo131135;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 595168 597604 . - . ID=Physo131136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140134;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 595168 597604 . - . ID=Physo131136;Parent=Physo131136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 595168 595479 . - 0 ID=Physo131136;Parent=Physo131136;rank=7 scaffold_14 . exon 595168 595479 . - . ID=Physo131136.7;Parent=Physo131136;constitutive=1;rank=7 scaffold_14 . CDS 595617 596235 . - 0 ID=Physo131136;Parent=Physo131136;rank=6 scaffold_14 . exon 595617 596235 . - . ID=Physo131136.6;Parent=Physo131136;constitutive=1;ensembl_phase=2;rank=6 scaffold_14 . CDS 596319 596449 . - 0 ID=Physo131136;Parent=Physo131136;rank=5 scaffold_14 . exon 596319 596449 . - . ID=Physo131136.5;Parent=Physo131136;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_14 . CDS 596507 596673 . - 0 ID=Physo131136;Parent=Physo131136;rank=4 scaffold_14 . exon 596507 596673 . - . ID=Physo131136.4;Parent=Physo131136;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 596930 597058 . - 0 ID=Physo131136;Parent=Physo131136;rank=3 scaffold_14 . exon 596930 597058 . - . ID=Physo131136.3;Parent=Physo131136;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 597125 597403 . - 0 ID=Physo131136;Parent=Physo131136;rank=2 scaffold_14 . exon 597125 597403 . - . ID=Physo131136.2;Parent=Physo131136;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 597433 597604 . - 0 ID=Physo131136;Parent=Physo131136;rank=1 scaffold_14 . exon 597433 597604 . - . ID=Physo131136.1;Parent=Physo131136;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 598078 599374 . + . ID=Physo131137;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140135;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 598078 599374 . + . ID=Physo131137;Parent=Physo131137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 598078 598521 . + 0 ID=Physo131137;Parent=Physo131137;rank=1 scaffold_14 . exon 598078 598521 . + . ID=Physo131137.1;Parent=Physo131137;constitutive=1;rank=1 scaffold_14 . CDS 598680 599105 . + 0 ID=Physo131137;Parent=Physo131137;rank=2 scaffold_14 . exon 598680 599105 . + . ID=Physo131137.2;Parent=Physo131137;constitutive=1;rank=2 scaffold_14 . CDS 599366 599374 . + 0 ID=Physo131137;Parent=Physo131137;rank=3 scaffold_14 . repeat_region 601922 601983 . ? . description=trf scaffold_14 . repeat_region 602278 602503 . ? . description=trf scaffold_14 . repeat_region 602627 602695 . ? . description=trf scaffold_14 . exon 599366 599374 . + . ID=Physo131137.3;Parent=Physo131137;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 601552 602145 . - . ID=Physo131138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140136;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 601552 602145 . - . ID=Physo131138;Parent=Physo131138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 601552 602145 . - 0 ID=Physo131138;Parent=Physo131138;rank=1 scaffold_14 . exon 601552 602145 . - . ID=Physo131138.1;Parent=Physo131138;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 606881 610459 . + . ID=Physo131139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140137;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 606881 610459 . + . ID=Physo131139;Parent=Physo131139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 606881 607729 . + 0 ID=Physo131139;Parent=Physo131139;rank=1 scaffold_14 . exon 606881 607729 . + . ID=Physo131139.1;Parent=Physo131139;constitutive=1;rank=1 scaffold_14 . CDS 607750 608114 . + 0 ID=Physo131139;Parent=Physo131139;rank=2 scaffold_14 . exon 607750 608114 . + . ID=Physo131139.2;Parent=Physo131139;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 608134 608177 . + 0 ID=Physo131139;Parent=Physo131139;rank=3 scaffold_14 . exon 608134 608177 . + . ID=Physo131139.3;Parent=Physo131139;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 608401 608460 . + 0 ID=Physo131139;Parent=Physo131139;rank=4 scaffold_14 . exon 608401 608460 . + . ID=Physo131139.4;Parent=Physo131139;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 608760 610327 . + 0 ID=Physo131139;Parent=Physo131139;rank=5 scaffold_14 . exon 608760 610459 . + . ID=Physo131139.5;Parent=Physo131139;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_14 . biological_region 610080 610083 0.999 + . logic_name=eponine scaffold_14 . biological_region 610823 610824 0.999 + . logic_name=eponine scaffold_14 . biological_region 611403 611406 0.999 - . logic_name=eponine scaffold_14 . repeat_region 615350 615358 . ? . description=dust scaffold_14 . biological_region 617496 617502 0.999 - . logic_name=eponine scaffold_14 . biological_region 618102 618107 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 611303 612475 . + . ID=Physo131140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140138;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 611303 612475 . + . ID=Physo131140;Parent=Physo131140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 611303 612475 . + 0 ID=Physo131140;Parent=Physo131140;rank=1 scaffold_14 . exon 611303 612475 . + . ID=Physo131140.1;Parent=Physo131140;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 613485 615221 . + . ID=Physo131141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140139;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 613485 615221 . + . ID=Physo131141;Parent=Physo131141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 613485 615221 . + 0 ID=Physo131141;Parent=Physo131141;rank=1 scaffold_14 . exon 613485 615221 . + . ID=Physo131141.1;Parent=Physo131141;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 615449 617385 . - . ID=Physo131142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140140;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 615449 617385 . - . ID=Physo131142;Parent=Physo131142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 615449 616628 . - 0 ID=Physo131142;Parent=Physo131142;rank=2 scaffold_14 . exon 615449 616628 . - . ID=Physo131142.2;Parent=Physo131142;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 616703 617385 . - 0 ID=Physo131142;Parent=Physo131142;rank=1 scaffold_14 . exon 616703 617385 . - . ID=Physo131142.1;Parent=Physo131142;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 618118 620085 . - . ID=Physo131143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140141;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 618118 620085 . - . ID=Physo131143;Parent=Physo131143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 618118 619327 . - 0 ID=Physo131143;Parent=Physo131143;rank=2 scaffold_14 . exon 618118 619327 . - . ID=Physo131143.2;Parent=Physo131143;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 619406 620085 . - 0 ID=Physo131143;Parent=Physo131143;rank=1 scaffold_14 . repeat_region 623437 623528 . ? . description=trf scaffold_14 . repeat_region 625247 625302 . ? . description=trf scaffold_14 . repeat_region 625739 625774 . ? . description=trf scaffold_14 . exon 619406 620085 . - . ID=Physo131143.1;Parent=Physo131143;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 620693 622573 . - . ID=Physo131144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140142;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 620693 622573 . - . ID=Physo131144;Parent=Physo131144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 620693 622573 . - 0 ID=Physo131144;Parent=Physo131144;rank=1 scaffold_14 . exon 620693 622573 . - . ID=Physo131144.1;Parent=Physo131144;constitutive=1;rank=1 scaffold_14 . biological_region 629234 629236 0.999 + . logic_name=eponine scaffold_14 . biological_region 629646 629653 0.999 - . logic_name=eponine scaffold_14 . biological_region 629751 629755 0.999 - . logic_name=eponine scaffold_14 . biological_region 629873 629874 0.999 + . logic_name=eponine scaffold_14 . biological_region 630032 630041 0.999 + . logic_name=eponine scaffold_14 . biological_region 630781 630786 0.999 + . logic_name=eponine scaffold_14 . biological_region 630825 630828 0.999 + . logic_name=eponine scaffold_14 . biological_region 630836 630845 0.999 - . logic_name=eponine scaffold_14 . biological_region 630855 630859 0.999 + . logic_name=eponine scaffold_14 . biological_region 630914 630918 0.999 - . logic_name=eponine scaffold_14 . biological_region 631081 631087 0.999 + . logic_name=eponine scaffold_14 . biological_region 631196 631200 0.999 - . logic_name=eponine scaffold_14 . biological_region 631270 631277 0.999 + . logic_name=eponine scaffold_14 . biological_region 632082 632084 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 631106 632317 . + . ID=Physo131145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140143;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 631106 632317 . + . ID=Physo131145;Parent=Physo131145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 631106 632317 . + 0 ID=Physo131145;Parent=Physo131145;rank=1 scaffold_14 . exon 631106 632317 . + . ID=Physo131145.1;Parent=Physo131145;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 632675 634444 . - . ID=Physo131146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140144;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 632675 634444 . - . ID=Physo131146;Parent=Physo131146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 632675 634444 . - 0 ID=Physo131146;Parent=Physo131146;rank=1 scaffold_14 . exon 632675 634444 . - . ID=Physo131146.1;Parent=Physo131146;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 635786 636971 . + . ID=Physo131147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140145;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 635786 636971 . + . ID=Physo131147;Parent=Physo131147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 635786 636057 . + 0 ID=Physo131147;Parent=Physo131147;rank=1 scaffold_14 . exon 635786 636057 . + . ID=Physo131147.1;Parent=Physo131147;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 636155 636971 . + 0 ID=Physo131147;Parent=Physo131147;rank=2 scaffold_14 . exon 636155 636971 . + . ID=Physo131147.2;Parent=Physo131147;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 637702 642285 . - . ID=Physo131148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140146;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 637702 642285 . - . ID=Physo131148;Parent=Physo131148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 637702 639461 . - 0 ID=Physo131148;Parent=Physo131148;rank=3 scaffold_14 . exon 637702 639461 . - . ID=Physo131148.3;Parent=Physo131148;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 639507 639617 . - 0 ID=Physo131148;Parent=Physo131148;rank=2 scaffold_14 . CDS 639864 642285 . - 0 ID=Physo131148;Parent=Physo131148;rank=1 scaffold_14 . repeat_region 640976 641063 . ? . description=trf scaffold_14 . repeat_region 647883 647898 . ? . description=dust scaffold_14 . exon 639507 639617 . - . ID=Physo131148.2;Parent=Physo131148;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . exon 639864 642285 . - . ID=Physo131148.1;Parent=Physo131148;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 643392 645166 . + . ID=Physo131149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140147;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 643392 645166 . + . ID=Physo131149;Parent=Physo131149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 643392 644095 . + 0 ID=Physo131149;Parent=Physo131149;rank=1 scaffold_14 . exon 643392 644095 . + . ID=Physo131149.1;Parent=Physo131149;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 644182 645166 . + 0 ID=Physo131149;Parent=Physo131149;rank=2 scaffold_14 . exon 644182 645166 . + . ID=Physo131149.2;Parent=Physo131149;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . biological_region 649812 649814 0.999 + . logic_name=eponine scaffold_14 . biological_region 650301 650305 0.999 - . logic_name=eponine scaffold_14 . biological_region 657904 657905 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 653924 655607 . - . ID=Physo131150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140148;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 653924 655607 . - . ID=Physo131150;Parent=Physo131150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 653924 654535 . - 0 ID=Physo131150;Parent=Physo131150;rank=2 scaffold_14 . exon 653924 654535 . - . ID=Physo131150.2;Parent=Physo131150;constitutive=1;rank=2 scaffold_14 . CDS 654576 655607 . - 0 ID=Physo131150;Parent=Physo131150;rank=1 scaffold_14 . exon 654576 655607 . - . ID=Physo131150.1;Parent=Physo131150;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 656258 657656 . + . ID=Physo131151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140149;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 656258 657656 . + . ID=Physo131151;Parent=Physo131151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 656258 657607 . + 0 ID=Physo131151;Parent=Physo131151;rank=1 scaffold_14 . exon 656258 657607 . + . ID=Physo131151.1;Parent=Physo131151;constitutive=1;rank=1 scaffold_14 . CDS 657639 657656 . + 0 ID=Physo131151;Parent=Physo131151;rank=2 scaffold_14 . exon 657639 657656 . + . ID=Physo131151.2;Parent=Physo131151;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 657801 660284 . - . ID=Physo131152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140150;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 657801 660284 . - . ID=Physo131152;Parent=Physo131152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 657801 660284 . - 0 ID=Physo131152;Parent=Physo131152;rank=1 scaffold_14 . exon 657801 660284 . - . ID=Physo131152.1;Parent=Physo131152;constitutive=1;rank=1 scaffold_14 . repeat_region 658897 659057 . ? . description=trf scaffold_14 . repeat_region 658987 659117 . ? . description=trf scaffold_14 . repeat_region 659079 659119 . ? . description=trf scaffold_14 . repeat_region 659336 659376 . ? . description=trf scaffold_14 . repeat_region 659486 659758 . ? . description=trf scaffold_14 . repeat_region 659550 659758 . ? . description=trf scaffold_14 . repeat_region 659740 659873 . ? . description=trf scaffold_14 . repeat_region 659743 659889 . ? . description=trf scaffold_14 . repeat_region 660126 660155 . ? . description=trf scaffold_14 . repeat_region 662247 662288 . ? . description=dust scaffold_14 . repeat_region 668023 668051 . ? . description=trf scaffold_14 ensembl protein_coding_gene 666873 668012 . - . ID=Physo108527;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140007;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 666873 668012 . - . ID=Physo108527;Parent=Physo108527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 666873 668012 . - 0 ID=Physo108527;Parent=Physo108527;rank=1 scaffold_14 . exon 666873 668012 . - . ID=Physo108527.1;Parent=Physo108527;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 661840 662568 . + . ID=Physo131153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140151;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 661840 662568 . + . ID=Physo131153;Parent=Physo131153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 661840 662568 . + 0 ID=Physo131153;Parent=Physo131153;rank=1 scaffold_14 . exon 661840 662568 . + . ID=Physo131153.1;Parent=Physo131153;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 662633 665020 . - . ID=Physo131154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140152;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 662633 665020 . - . ID=Physo131154;Parent=Physo131154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 662633 665020 . - 0 ID=Physo131154;Parent=Physo131154;rank=1 scaffold_14 . exon 662633 665020 . - . ID=Physo131154.1;Parent=Physo131154;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 665704 666457 . + . ID=Physo131155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140153;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 665704 666457 . + . ID=Physo131155;Parent=Physo131155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 665704 666457 . + . ID=Physo131155.1;Parent=Physo131155;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 665711 666457 . + 0 ID=Physo131155;Parent=Physo131155;rank=1 scaffold_14 . biological_region 678683 678686 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 670267 670991 . + . ID=Physo131157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140155;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 670267 670991 . + . ID=Physo131157;Parent=Physo131157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 670267 670938 . + 0 ID=Physo131157;Parent=Physo131157;rank=1 scaffold_14 . exon 670267 670938 . + . ID=Physo131157.1;Parent=Physo131157;constitutive=1;rank=1 scaffold_14 . CDS 670965 670991 . + 0 ID=Physo131157;Parent=Physo131157;rank=2 scaffold_14 . exon 670965 670991 . + . ID=Physo131157.2;Parent=Physo131157;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 671218 672022 . - . ID=Physo131158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140156;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 671218 672022 . - . ID=Physo131158;Parent=Physo131158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 671218 671271 . - 0 ID=Physo131158;Parent=Physo131158;rank=3 scaffold_14 . exon 671218 671271 . - . ID=Physo131158.3;Parent=Physo131158;constitutive=1;rank=3 scaffold_14 . CDS 671298 671707 . - 0 ID=Physo131158;Parent=Physo131158;rank=2 scaffold_14 . exon 671298 671707 . - . ID=Physo131158.2;Parent=Physo131158;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 671908 672022 . - 0 ID=Physo131158;Parent=Physo131158;rank=1 scaffold_14 . exon 671908 672022 . - . ID=Physo131158.1;Parent=Physo131158;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 672201 675254 . + . ID=Physo131159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140157;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 672201 675254 . + . ID=Physo131159;Parent=Physo131159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 672201 675254 . + 0 ID=Physo131159;Parent=Physo131159;rank=1 scaffold_14 . exon 672201 675254 . + . ID=Physo131159.1;Parent=Physo131159;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 675963 677099 . - . ID=Physo131160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140158;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 675963 677099 . - . ID=Physo131160;Parent=Physo131160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 675963 676367 . - 0 ID=Physo131160;Parent=Physo131160;rank=2 scaffold_14 . exon 675963 676367 . - . ID=Physo131160.2;Parent=Physo131160;constitutive=1;rank=2 scaffold_14 . CDS 676675 677058 . - 0 ID=Physo131160;Parent=Physo131160;rank=1 scaffold_14 . exon 676675 677099 . - . ID=Physo131160.1;Parent=Physo131160;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 677867 678280 . - . ID=Physo131161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140159;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 677867 678280 . - . ID=Physo131161;Parent=Physo131161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 677867 678280 . - 0 ID=Physo131161;Parent=Physo131161;rank=1 scaffold_14 . exon 677867 678280 . - . ID=Physo131161.1;Parent=Physo131161;constitutive=1;rank=1 scaffold_14 . repeat_region 683797 683850 . ? . description=trf scaffold_14 . repeat_region 683800 683839 . ? . description=trf scaffold_14 . repeat_region 686935 687854 . ? . description=trf scaffold_14 ensembl protein_coding_gene 688043 688135 . + . ID=Physo113379;biotype=protein_coding;external_name=estExt_Genewise1.C_140047;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 688043 688135 . + . ID=Physo113379;Parent=Physo113379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 688043 688135 . + 0 ID=Physo113379;Parent=Physo113379;rank=1 scaffold_14 . exon 688043 688135 . + . ID=Physo113379.1;Parent=Physo113379;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 679626 680810 . + . ID=Physo131162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140160;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 679626 680810 . + . ID=Physo131162;Parent=Physo131162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 679626 680810 . + 0 ID=Physo131162;Parent=Physo131162;rank=1 scaffold_14 . exon 679626 680810 . + . ID=Physo131162.1;Parent=Physo131162;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 681035 685300 . - . ID=Physo131163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140161;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 681035 685300 . - . ID=Physo131163;Parent=Physo131163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 681035 685300 . - 0 ID=Physo131163;Parent=Physo131163;rank=1 scaffold_14 . exon 681035 685300 . - . ID=Physo131163.1;Parent=Physo131163;constitutive=1;rank=1 scaffold_14 . repeat_region 689379 689386 . ? . description=dust scaffold_14 . biological_region 689634 689635 0.999 - . logic_name=eponine scaffold_14 . biological_region 689688 689694 0.999 + . logic_name=eponine scaffold_14 . repeat_region 691622 691629 . ? . description=dust scaffold_14 . repeat_region 692601 692608 . ? . description=dust scaffold_14 . repeat_region 694717 694724 . ? . description=dust scaffold_14 . biological_region 696142 696146 0.999 - . logic_name=eponine scaffold_14 . repeat_region 696511 696574 . ? . description=dust scaffold_14 . biological_region 696946 696950 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 689510 690318 . - . ID=Physo108528;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140008;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 689510 690318 . - . ID=Physo108528;Parent=Physo108528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 689510 689824 . - 0 ID=Physo108528;Parent=Physo108528;rank=3 scaffold_14 . exon 689510 689824 . - . ID=Physo108528.3;Parent=Physo108528;constitutive=1;rank=3 scaffold_14 . CDS 689920 689991 . - 0 ID=Physo108528;Parent=Physo108528;rank=2 scaffold_14 . exon 689920 689991 . - . ID=Physo108528.2;Parent=Physo108528;constitutive=1;rank=2 scaffold_14 . CDS 690090 690305 . - 0 ID=Physo108528;Parent=Physo108528;rank=1 scaffold_14 . exon 690090 690318 . - . ID=Physo108528.1;Parent=Physo108528;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 691725 692456 . + . ID=Physo131166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140164;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 691725 692456 . + . ID=Physo131166;Parent=Physo131166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 691725 692456 . + 0 ID=Physo131166;Parent=Physo131166;rank=1 scaffold_14 . exon 691725 692456 . + . ID=Physo131166.1;Parent=Physo131166;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 692699 693619 . + . ID=Physo131167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140165;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 692699 693619 . + . ID=Physo131167;Parent=Physo131167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 692699 692814 . + 0 ID=Physo131167;Parent=Physo131167;rank=1 scaffold_14 . exon 692699 692814 . + . ID=Physo131167.1;Parent=Physo131167;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 692905 693619 . + 0 ID=Physo131167;Parent=Physo131167;rank=2 scaffold_14 . exon 692905 693619 . + . ID=Physo131167.2;Parent=Physo131167;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 694058 694657 . + . ID=Physo131168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140166;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 694058 694657 . + . ID=Physo131168;Parent=Physo131168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 694058 694657 . + 0 ID=Physo131168;Parent=Physo131168;rank=1 scaffold_14 . exon 694058 694657 . + . ID=Physo131168.1;Parent=Physo131168;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 695206 696171 . + . ID=Physo131169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140167;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 695206 696171 . + . ID=Physo131169;Parent=Physo131169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 695206 696171 . + 0 ID=Physo131169;Parent=Physo131169;rank=1 scaffold_14 . exon 695206 696171 . + . ID=Physo131169.1;Parent=Physo131169;constitutive=1;rank=1 scaffold_14 ensembl pseudogene 696920 697885 . - . ID=Physo131170;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_140168;logic_name=jgi_physo1_1 scaffold_14 ensembl pseudogene 696920 697885 . - . ID=Physo131170;Parent=Physo131170;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_14 . exon 696920 697885 . - . ID=Physo131170.1;Parent=Physo131170;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 698769 699509 . + . ID=Physo131171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140169;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 698769 699509 . + . ID=Physo131171;Parent=Physo131171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 698769 699509 . + 0 ID=Physo131171;Parent=Physo131171;rank=1 scaffold_14 . exon 698769 699509 . + . ID=Physo131171.1;Parent=Physo131171;constitutive=1;rank=1 scaffold_14 . repeat_region 698985 699337 . ? . description=trf scaffold_14 ensembl protein_coding_gene 702946 704060 . + . ID=Physo131174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140172;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 702946 704060 . + . ID=Physo131174;Parent=Physo131174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 702946 703015 . + 0 ID=Physo131174;Parent=Physo131174;rank=1 scaffold_14 . exon 702946 703015 . + . ID=Physo131174.1;Parent=Physo131174;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 703250 703398 . + 0 ID=Physo131174;Parent=Physo131174;rank=2 scaffold_14 . exon 703250 703398 . + . ID=Physo131174.2;Parent=Physo131174;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 703500 704060 . + 0 ID=Physo131174;Parent=Physo131174;rank=3 scaffold_14 . exon 703500 704060 . + . ID=Physo131174.3;Parent=Physo131174;constitutive=1;rank=3 scaffold_14 ensembl protein_coding_gene 704384 705643 . - . ID=Physo131175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140173;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 704384 705643 . - . ID=Physo131175;Parent=Physo131175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 704384 705643 . - 0 ID=Physo131175;Parent=Physo131175;rank=1 scaffold_14 . exon 704384 705643 . - . ID=Physo131175.1;Parent=Physo131175;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 707215 708468 . - . ID=Physo131176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140174;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 707215 708468 . - . ID=Physo131176;Parent=Physo131176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 707215 708189 . - 0 ID=Physo131176;Parent=Physo131176;rank=3 scaffold_14 . exon 707215 708189 . - . ID=Physo131176.3;Parent=Physo131176;constitutive=1;rank=3 scaffold_14 . CDS 708212 708329 . - 0 ID=Physo131176;Parent=Physo131176;rank=2 scaffold_14 . exon 708212 708329 . - . ID=Physo131176.2;Parent=Physo131176;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 708464 708468 . - 0 ID=Physo131176;Parent=Physo131176;rank=1 scaffold_14 . exon 708464 708468 . - . ID=Physo131176.1;Parent=Physo131176;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 700103 700822 . + . ID=Physo156225;biotype=protein_coding;external_name=C_scaffold_14000002;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 700103 700822 . + . ID=Physo156225;Parent=Physo156225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 700103 700319 . + 0 ID=Physo156225;Parent=Physo156225;rank=1 scaffold_14 . exon 700103 700319 . + . ID=Physo156225.1;Parent=Physo156225;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 700485 700822 . + 0 ID=Physo156225;Parent=Physo156225;rank=2 scaffold_14 . exon 700485 700822 . + . ID=Physo156225.2;Parent=Physo156225;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 701462 702229 . + . ID=Physo156226;biotype=protein_coding;external_name=C_scaffold_14000003;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 701462 702229 . + . ID=Physo156226;Parent=Physo156226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 701462 702229 . + 0 ID=Physo156226;Parent=Physo156226;rank=1 scaffold_14 . exon 701462 702229 . + . ID=Physo156226.1;Parent=Physo156226;constitutive=1;rank=1 scaffold_14 . biological_region 714340 714341 0.999 + . logic_name=eponine scaffold_14 . biological_region 714446 714449 0.999 - . logic_name=eponine scaffold_14 . repeat_region 718450 718462 . ? . description=dust scaffold_14 ensembl protein_coding_gene 709009 710260 . + . ID=Physo131177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140175;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 709009 710260 . + . ID=Physo131177;Parent=Physo131177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 709009 709174 . + 0 ID=Physo131177;Parent=Physo131177;rank=1 scaffold_14 . exon 709009 709174 . + . ID=Physo131177.1;Parent=Physo131177;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 709332 710260 . + 0 ID=Physo131177;Parent=Physo131177;rank=2 scaffold_14 . exon 709332 710260 . + . ID=Physo131177.2;Parent=Physo131177;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 714041 715064 . - . ID=Physo131178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140176;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 714041 715064 . - . ID=Physo131178;Parent=Physo131178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 714041 714660 . - 0 ID=Physo131178;Parent=Physo131178;rank=3 scaffold_14 . exon 714041 714660 . - . ID=Physo131178.3;Parent=Physo131178;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 714758 714855 . - 0 ID=Physo131178;Parent=Physo131178;rank=2 scaffold_14 . exon 714758 714855 . - . ID=Physo131178.2;Parent=Physo131178;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 714944 715053 . - 0 ID=Physo131178;Parent=Physo131178;rank=1 scaffold_14 . exon 714944 715064 . - . ID=Physo131178.1;Parent=Physo131178;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 717113 717968 . + . ID=Physo131179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140177;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 717113 717968 . + . ID=Physo131179;Parent=Physo131179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 717113 717326 . + 0 ID=Physo131179;Parent=Physo131179;rank=1 scaffold_14 . exon 717113 717326 . + . ID=Physo131179.1;Parent=Physo131179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 717463 717968 . + 0 ID=Physo131179;Parent=Physo131179;rank=2 scaffold_14 . exon 717463 717968 . + . ID=Physo131179.2;Parent=Physo131179;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 ensembl protein_coding_gene 723158 724235 . + . ID=Physo108529;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140009;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 723158 724235 . + . ID=Physo108529;Parent=Physo108529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 723158 724235 . + . ID=Physo108529.1;Parent=Physo108529;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 723198 724235 . + 0 ID=Physo108529;Parent=Physo108529;rank=1 scaffold_14 ensembl protein_coding_gene 718986 720217 . - . ID=Physo131180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140178;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 718986 720217 . - . ID=Physo131180;Parent=Physo131180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 718986 719912 . - 0 ID=Physo131180;Parent=Physo131180;rank=2 scaffold_14 . exon 718986 719912 . - . ID=Physo131180.2;Parent=Physo131180;constitutive=1;rank=2 scaffold_14 . CDS 719983 720213 . - 0 ID=Physo131180;Parent=Physo131180;rank=1 scaffold_14 . exon 719983 720217 . - . ID=Physo131180.1;Parent=Physo131180;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 720566 721513 . + . ID=Physo131181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140179;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 720566 721513 . + . ID=Physo131181;Parent=Physo131181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 720566 721513 . + 0 ID=Physo131181;Parent=Physo131181;rank=1 scaffold_14 . exon 720566 721513 . + . ID=Physo131181.1;Parent=Physo131181;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 724468 725488 . + . ID=Physo131183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140181;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 724468 725488 . + . ID=Physo131183;Parent=Physo131183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 724468 725402 . + . ID=Physo131183.1;Parent=Physo131183;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_14 . CDS 724504 725402 . + 0 ID=Physo131183;Parent=Physo131183;rank=1 scaffold_14 . CDS 725464 725488 . + 0 ID=Physo131183;Parent=Physo131183;rank=2 scaffold_14 . exon 725464 725488 . + . ID=Physo131183.2;Parent=Physo131183;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 725557 729308 . - . ID=Physo156228;biotype=protein_coding;external_name=C_scaffold_14000005;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 725557 729308 . - . ID=Physo156228;Parent=Physo156228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 725557 725797 . - 0 ID=Physo156228;Parent=Physo156228;rank=6 scaffold_14 . exon 725557 725797 . - . ID=Physo156228.6;Parent=Physo156228;constitutive=1;ensembl_phase=2;rank=6 scaffold_14 . CDS 725843 725973 . - 0 ID=Physo156228;Parent=Physo156228;rank=5 scaffold_14 . exon 725843 725973 . - . ID=Physo156228.5;Parent=Physo156228;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_14 . CDS 726045 726112 . - 0 ID=Physo156228;Parent=Physo156228;rank=4 scaffold_14 . exon 726045 726112 . - . ID=Physo156228.4;Parent=Physo156228;constitutive=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 726272 726704 . - 0 ID=Physo156228;Parent=Physo156228;rank=3 scaffold_14 . exon 726272 726704 . - . ID=Physo156228.3;Parent=Physo156228;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_14 . CDS 726873 727216 . - 0 ID=Physo156228;Parent=Physo156228;rank=2 scaffold_14 . exon 726873 727216 . - . ID=Physo156228.2;Parent=Physo156228;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 727373 729308 . - 0 ID=Physo156228;Parent=Physo156228;rank=1 scaffold_14 . exon 727373 729308 . - . ID=Physo156228.1;Parent=Physo156228;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . repeat_region 730129 730164 . ? . description=trf scaffold_14 . repeat_region 732436 732631 . - . description=Polinton-1_PI scaffold_14 . repeat_region 732636 732726 . - . description=Polinton-1_PI scaffold_14 . repeat_region 732785 733083 . + . description=Polinton-1_PI scaffold_14 . repeat_region 733240 733270 . + . description=Polinton-1_PI scaffold_14 . repeat_region 733618 733675 . ? . description=dust scaffold_14 . repeat_region 733676 734475 . ? . description=dust scaffold_14 . repeat_region 734477 750500 . + . description=Polinton-1_PI scaffold_14 . repeat_region 738389 738402 . ? . description=dust scaffold_14 ensembl protein_coding_gene 732906 733617 . + . ID=Physo131185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140183;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 732906 733617 . + . ID=Physo131185;Parent=Physo131185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 732906 733031 . + . ID=Physo131185.1;Parent=Physo131185;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_14 . CDS 732922 733031 . + 0 ID=Physo131185;Parent=Physo131185;rank=1 scaffold_14 . CDS 733056 733468 . + 0 ID=Physo131185;Parent=Physo131185;rank=2 scaffold_14 . exon 733056 733468 . + . ID=Physo131185.2;Parent=Physo131185;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 733541 733617 . + 0 ID=Physo131185;Parent=Physo131185;rank=3 scaffold_14 . exon 733541 733617 . + . ID=Physo131185.3;Parent=Physo131185;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . repeat_region 734477 750500 . + . description=Polinton-1_PI scaffold_14 . repeat_region 749822 749871 . ? . description=dust scaffold_14 . repeat_region 751866 751874 . ? . description=dust scaffold_14 . repeat_region 756386 756398 . ? . description=dust scaffold_14 . repeat_region 762352 762379 . ? . description=trf scaffold_14 . repeat_region 764801 764850 . ? . description=trf scaffold_14 . biological_region 764976 764978 0.999 - . logic_name=eponine scaffold_14 . repeat_region 768007 768033 . ? . description=trf scaffold_14 ensembl protein_coding_gene 759971 760816 . - . ID=Physo113394;biotype=protein_coding;external_name=estExt_Genewise1.C_140062;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 759971 760816 . - . ID=Physo113394;Parent=Physo113394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 759971 760602 . - 0 ID=Physo113394;Parent=Physo113394;rank=2 scaffold_14 . exon 759971 760602 . - . ID=Physo113394.2;Parent=Physo113394;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 760756 760813 . - 0 ID=Physo113394;Parent=Physo113394;rank=1 scaffold_14 . exon 760756 760816 . - . ID=Physo113394.1;Parent=Physo113394;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 760936 761390 . - . ID=Physo113396;biotype=protein_coding;external_name=estExt_Genewise1.C_140064;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 760936 761390 . - . ID=Physo113396;Parent=Physo113396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 760936 761199 . - 0 ID=Physo113396;Parent=Physo113396;rank=1 scaffold_14 . exon 760936 761390 . - . ID=Physo113396.1;Parent=Physo113396;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 762425 763898 . - . ID=Physo113398;biotype=protein_coding;external_name=estExt_Genewise1.C_140066;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 762425 763898 . - . ID=Physo113398;Parent=Physo113398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 762425 763369 . - 0 ID=Physo113398;Parent=Physo113398;rank=2 scaffold_14 . exon 762425 763369 . - . ID=Physo113398.2;Parent=Physo113398;constitutive=1;rank=2 scaffold_14 . CDS 763473 763898 . - 0 ID=Physo113398;Parent=Physo113398;rank=1 scaffold_14 . exon 763473 763898 . - . ID=Physo113398.1;Parent=Physo113398;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 769270 771216 . + . ID=Physo131186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140184;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 769270 771216 . + . ID=Physo131186;Parent=Physo131186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 769270 771216 . + 0 ID=Physo131186;Parent=Physo131186;rank=1 scaffold_14 . exon 769270 771216 . + . ID=Physo131186.1;Parent=Physo131186;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 776201 777446 . - . ID=Physo131187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140185;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 776201 777446 . - . ID=Physo131187;Parent=Physo131187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 776201 777446 . - . ID=Physo131187.1;Parent=Physo131187;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_14 . CDS 776226 777446 . - 0 ID=Physo131187;Parent=Physo131187;rank=1 scaffold_14 . biological_region 780154 780159 0.999 + . logic_name=eponine scaffold_14 . biological_region 786920 786922 0.999 + . logic_name=eponine scaffold_14 . repeat_region 787138 787157 . ? . description=trf scaffold_14 . biological_region 787567 787570 0.999 + . logic_name=eponine scaffold_14 . biological_region 787646 787649 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 785856 786698 . + . ID=Physo108530;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140010;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 785856 786698 . + . ID=Physo108530;Parent=Physo108530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 785856 786698 . + 0 ID=Physo108530;Parent=Physo108530;rank=1 scaffold_14 . exon 785856 786698 . + . ID=Physo108530.1;Parent=Physo108530;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 779288 780001 . - . ID=Physo131188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140186;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 779288 780001 . - . ID=Physo131188;Parent=Physo131188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 779288 779335 . - 0 ID=Physo131188;Parent=Physo131188;rank=3 scaffold_14 . exon 779288 779335 . - . ID=Physo131188.3;Parent=Physo131188;constitutive=1;rank=3 scaffold_14 . CDS 779392 779426 . - 0 ID=Physo131188;Parent=Physo131188;rank=2 scaffold_14 . exon 779392 779426 . - . ID=Physo131188.2;Parent=Physo131188;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 779542 780001 . - 0 ID=Physo131188;Parent=Physo131188;rank=1 scaffold_14 . exon 779542 780001 . - . ID=Physo131188.1;Parent=Physo131188;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 784717 785724 . + . ID=Physo131189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140187;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 784717 785724 . + . ID=Physo131189;Parent=Physo131189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 784717 785724 . + 0 ID=Physo131189;Parent=Physo131189;rank=1 scaffold_14 . exon 784717 785724 . + . ID=Physo131189.1;Parent=Physo131189;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 788063 789211 . + . ID=Physo131191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140189;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 788063 789211 . + . ID=Physo131191;Parent=Physo131191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 788063 789211 . + 0 ID=Physo131191;Parent=Physo131191;rank=1 scaffold_14 . exon 788063 789211 . + . ID=Physo131191.1;Parent=Physo131191;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 792474 793235 . - . ID=Physo113409;biotype=protein_coding;external_name=estExt_Genewise1.C_140077;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 792474 793235 . - . ID=Physo113409;Parent=Physo113409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 792474 792830 . - 0 ID=Physo113409;Parent=Physo113409;rank=2 scaffold_14 . exon 792474 792830 . - . ID=Physo113409.2;Parent=Physo113409;constitutive=1;rank=2 scaffold_14 . CDS 793041 793211 . - 0 ID=Physo113409;Parent=Physo113409;rank=1 scaffold_14 . exon 793041 793235 . - . ID=Physo113409.1;Parent=Physo113409;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 793952 794749 . - . ID=Physo131192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140190;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 793952 794749 . - . ID=Physo131192;Parent=Physo131192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 793952 794111 . - 0 ID=Physo131192;Parent=Physo131192;rank=3 scaffold_14 . exon 793952 794111 . - . ID=Physo131192.3;Parent=Physo131192;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 794131 794453 . - 0 ID=Physo131192;Parent=Physo131192;rank=2 scaffold_14 . exon 794131 794453 . - . ID=Physo131192.2;Parent=Physo131192;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 794747 794749 . - 0 ID=Physo131192;Parent=Physo131192;rank=1 scaffold_14 . exon 794747 794749 . - . ID=Physo131192.1;Parent=Physo131192;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 795093 799202 . - . ID=Physo131193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140191;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 795093 799202 . - . ID=Physo131193;Parent=Physo131193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 795093 799202 . - 0 ID=Physo131193;Parent=Physo131193;rank=1 scaffold_14 . exon 795093 799202 . - . ID=Physo131193.1;Parent=Physo131193;constitutive=1;rank=1 scaffold_14 . repeat_region 803445 803510 . ? . description=trf scaffold_14 . repeat_region 803454 803524 . ? . description=trf scaffold_14 . biological_region 803772 803773 0.999 - . logic_name=eponine scaffold_14 . biological_region 805163 805166 0.999 + . logic_name=eponine scaffold_14 . biological_region 806327 806330 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 802901 803668 . - . ID=Physo131194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140192;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 802901 803668 . - . ID=Physo131194;Parent=Physo131194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 802901 803148 . - 0 ID=Physo131194;Parent=Physo131194;rank=2 scaffold_14 . exon 802901 803148 . - . ID=Physo131194.2;Parent=Physo131194;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 803410 803668 . - 0 ID=Physo131194;Parent=Physo131194;rank=1 scaffold_14 . exon 803410 803668 . - . ID=Physo131194.1;Parent=Physo131194;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 804276 813540 . - . ID=Physo131195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140193;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 804276 813540 . - . ID=Physo131195;Parent=Physo131195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 804276 805407 . - 0 ID=Physo131195;Parent=Physo131195;rank=7 scaffold_14 . exon 804276 805407 . - . ID=Physo131195.7;Parent=Physo131195;constitutive=1;ensembl_phase=2;rank=7 scaffold_14 . CDS 805469 806958 . - 0 ID=Physo131195;Parent=Physo131195;rank=6 scaffold_14 . exon 805469 806958 . - . ID=Physo131195.6;Parent=Physo131195;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_14 . CDS 807042 807123 . - 0 ID=Physo131195;Parent=Physo131195;rank=5 scaffold_14 . exon 807042 807123 . - . ID=Physo131195.5;Parent=Physo131195;constitutive=1;ensembl_phase=2;rank=5 scaffold_14 . CDS 807433 810621 . - 0 ID=Physo131195;Parent=Physo131195;rank=4 scaffold_14 . exon 807433 810621 . - . ID=Physo131195.4;Parent=Physo131195;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_14 . CDS 810650 811334 . - 0 ID=Physo131195;Parent=Physo131195;rank=3 scaffold_14 . CDS 811438 812808 . - 0 ID=Physo131195;Parent=Physo131195;rank=2 scaffold_14 . CDS 813021 813540 . - 0 ID=Physo131195;Parent=Physo131195;rank=1 scaffold_14 . repeat_region 817022 817029 . ? . description=dust scaffold_14 . repeat_region 818107 818117 . ? . description=dust scaffold_14 . exon 810650 811334 . - . ID=Physo131195.3;Parent=Physo131195;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_14 . exon 811438 812808 . - . ID=Physo131195.2;Parent=Physo131195;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . exon 813021 813540 . - . ID=Physo131195.1;Parent=Physo131195;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 814059 815942 . - . ID=Physo131196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140194;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 814059 815942 . - . ID=Physo131196;Parent=Physo131196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 814059 815942 . - 0 ID=Physo131196;Parent=Physo131196;rank=1 scaffold_14 . exon 814059 815942 . - . ID=Physo131196.1;Parent=Physo131196;constitutive=1;rank=1 scaffold_14 . repeat_region 819182 819208 . ? . description=trf scaffold_14 . biological_region 826660 826661 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 821690 822190 . - . ID=Physo131197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140195;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 821690 822190 . - . ID=Physo131197;Parent=Physo131197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 821690 822190 . - 0 ID=Physo131197;Parent=Physo131197;rank=1 scaffold_14 . exon 821690 822190 . - . ID=Physo131197.1;Parent=Physo131197;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 825094 827421 . + . ID=Physo131198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140196;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 825094 827421 . + . ID=Physo131198;Parent=Physo131198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 825094 827421 . + 0 ID=Physo131198;Parent=Physo131198;rank=1 scaffold_14 . exon 825094 827421 . + . ID=Physo131198.1;Parent=Physo131198;constitutive=1;rank=1 scaffold_14 . repeat_region 832099 832108 . ? . description=dust scaffold_14 ensembl protein_coding_gene 830464 831078 . - . ID=Physo131199;biotype=protein_coding;description=PsAvh128 [Source:UniProtKB/TrEMBL%3BAcc:E0W4T5];external_name=estExt_fgenesh1_pg.C_140197;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 830464 831078 . - . ID=Physo131199;Parent=Physo131199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 830464 831078 . - 0 ID=Physo131199;Parent=Physo131199;rank=1 scaffold_14 . exon 830464 831078 . - . ID=Physo131199.1;Parent=Physo131199;constitutive=1;rank=1 scaffold_14 . repeat_region 838655 838685 . ? . description=trf scaffold_14 . repeat_region 838655 838695 . ? . description=trf scaffold_14 . biological_region 839297 839301 0.999 + . logic_name=eponine scaffold_14 . biological_region 844366 844368 0.999 + . logic_name=eponine scaffold_14 . biological_region 846029 846035 0.999 + . logic_name=eponine scaffold_14 . biological_region 846235 846237 0.999 - . logic_name=eponine scaffold_14 . biological_region 846242 846244 0.999 + . logic_name=eponine scaffold_14 . biological_region 846266 846267 0.999 + . logic_name=eponine scaffold_14 . biological_region 846290 846298 0.999 - . logic_name=eponine scaffold_14 . biological_region 846322 846323 0.999 + . logic_name=eponine scaffold_14 . biological_region 846336 846340 0.999 - . logic_name=eponine scaffold_14 . biological_region 846348 846352 0.999 + . logic_name=eponine scaffold_14 . biological_region 846987 846992 0.999 - . logic_name=eponine scaffold_14 . biological_region 847955 847955 0.999 + . logic_name=eponine scaffold_14 . biological_region 848067 848068 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 840469 843375 . + . ID=Physo131200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140198;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 840469 843375 . + . ID=Physo131200;Parent=Physo131200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 840469 843375 . + 0 ID=Physo131200;Parent=Physo131200;rank=1 scaffold_14 . exon 840469 843375 . + . ID=Physo131200.1;Parent=Physo131200;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 843562 846237 . - . ID=Physo131201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140199;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 843562 846237 . - . ID=Physo131201;Parent=Physo131201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 843562 846237 . - 0 ID=Physo131201;Parent=Physo131201;rank=1 scaffold_14 . exon 843562 846237 . - . ID=Physo131201.1;Parent=Physo131201;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 847921 848376 . - . ID=Physo131202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140200;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 847921 848376 . - . ID=Physo131202;Parent=Physo131202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 847921 848376 . - 0 ID=Physo131202;Parent=Physo131202;rank=1 scaffold_14 . exon 847921 848376 . - . ID=Physo131202.1;Parent=Physo131202;constitutive=1;rank=1 scaffold_14 . repeat_region 855347 855354 . ? . description=dust scaffold_14 . repeat_region 857497 857505 . ? . description=dust scaffold_14 ensembl protein_coding_gene 852820 853668 . + . ID=Physo131203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140201;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 852820 853668 . + . ID=Physo131203;Parent=Physo131203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 852820 853473 . + 0 ID=Physo131203;Parent=Physo131203;rank=1 scaffold_14 . exon 852820 853668 . + . ID=Physo131203.1;Parent=Physo131203;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 855514 856772 . - . ID=Physo131204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140202;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 855514 856772 . - . ID=Physo131204;Parent=Physo131204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 855514 856452 . - 0 ID=Physo131204;Parent=Physo131204;rank=2 scaffold_14 . exon 855514 856452 . - . ID=Physo131204.2;Parent=Physo131204;constitutive=1;rank=2 scaffold_14 . CDS 856524 856772 . - 0 ID=Physo131204;Parent=Physo131204;rank=1 scaffold_14 . exon 856524 856772 . - . ID=Physo131204.1;Parent=Physo131204;constitutive=1;rank=1 scaffold_14 . biological_region 861164 861166 0.999 - . logic_name=eponine scaffold_14 . repeat_region 862197 862239 . ? . description=trf scaffold_14 . repeat_region 863782 863825 . ? . description=trf scaffold_14 . repeat_region 865017 865037 . ? . description=trf scaffold_14 . biological_region 865921 865922 0.999 + . logic_name=eponine scaffold_14 . biological_region 866088 866092 0.999 + . logic_name=eponine scaffold_14 . biological_region 867552 867553 0.999 + . logic_name=eponine scaffold_14 . biological_region 868515 868518 0.999 + . logic_name=eponine scaffold_14 . biological_region 868550 868551 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 860484 863370 . + . ID=Physo131205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140203;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 860484 863370 . + . ID=Physo131205;Parent=Physo131205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 860484 860488 . + 0 ID=Physo131205;Parent=Physo131205;rank=1 scaffold_14 . exon 860484 860488 . + . ID=Physo131205.1;Parent=Physo131205;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 860979 863370 . + 0 ID=Physo131205;Parent=Physo131205;rank=2 scaffold_14 . exon 860979 863370 . + . ID=Physo131205.2;Parent=Physo131205;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 863571 865211 . - . ID=Physo131206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140204;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 863571 865211 . - . ID=Physo131206;Parent=Physo131206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 863571 865211 . - 0 ID=Physo131206;Parent=Physo131206;rank=1 scaffold_14 . exon 863571 865211 . - . ID=Physo131206.1;Parent=Physo131206;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 865402 867670 . - . ID=Physo131207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140205;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 865402 867670 . - . ID=Physo131207;Parent=Physo131207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 865402 867264 . - 0 ID=Physo131207;Parent=Physo131207;rank=3 scaffold_14 . exon 865402 867264 . - . ID=Physo131207.3;Parent=Physo131207;constitutive=1;rank=3 scaffold_14 . CDS 867357 867415 . - 0 ID=Physo131207;Parent=Physo131207;rank=2 scaffold_14 . exon 867357 867415 . - . ID=Physo131207.2;Parent=Physo131207;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 867517 867670 . - 0 ID=Physo131207;Parent=Physo131207;rank=1 scaffold_14 . exon 867517 867670 . - . ID=Physo131207.1;Parent=Physo131207;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 868477 868818 . - . ID=Physo131208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140206;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 868477 868818 . - . ID=Physo131208;Parent=Physo131208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 868477 868818 . - 0 ID=Physo131208;Parent=Physo131208;rank=1 scaffold_14 . exon 868477 868818 . - . ID=Physo131208.1;Parent=Physo131208;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 875583 876341 . + . ID=Physo108531;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_140011;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 875583 876341 . + . ID=Physo108531;Parent=Physo108531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 875583 876341 . + 0 ID=Physo108531;Parent=Physo108531;rank=1 scaffold_14 . exon 875583 876341 . + . ID=Physo108531.1;Parent=Physo108531;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 869021 869957 . - . ID=Physo131209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140207;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 869021 869957 . - . ID=Physo131209;Parent=Physo131209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 869021 869473 . - . ID=Physo131209.3;Parent=Physo131209;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_14 . CDS 869122 869473 . - 0 ID=Physo131209;Parent=Physo131209;rank=3 scaffold_14 . CDS 869646 869869 . - 0 ID=Physo131209;Parent=Physo131209;rank=2 scaffold_14 . exon 869646 869869 . - . ID=Physo131209.2;Parent=Physo131209;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_14 . CDS 869898 869957 . - 0 ID=Physo131209;Parent=Physo131209;rank=1 scaffold_14 . exon 869898 869957 . - . ID=Physo131209.1;Parent=Physo131209;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 870324 871573 . - . ID=Physo131210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140208;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 870324 871573 . - . ID=Physo131210;Parent=Physo131210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 870324 870697 . - 0 ID=Physo131210;Parent=Physo131210;rank=3 scaffold_14 . exon 870324 870697 . - . ID=Physo131210.3;Parent=Physo131210;constitutive=1;ensembl_phase=1;rank=3 scaffold_14 . CDS 870791 871128 . - 0 ID=Physo131210;Parent=Physo131210;rank=2 scaffold_14 . exon 870791 871128 . - . ID=Physo131210.2;Parent=Physo131210;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 871221 871543 . - 0 ID=Physo131210;Parent=Physo131210;rank=1 scaffold_14 . exon 871221 871573 . - . ID=Physo131210.1;Parent=Physo131210;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 871771 873105 . - . ID=Physo131211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140209;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 871771 873105 . - . ID=Physo131211;Parent=Physo131211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 871771 872190 . - . ID=Physo131211.3;Parent=Physo131211;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_14 . CDS 871817 872190 . - 0 ID=Physo131211;Parent=Physo131211;rank=3 scaffold_14 . CDS 872272 872609 . - 0 ID=Physo131211;Parent=Physo131211;rank=2 scaffold_14 . exon 872272 872609 . - . ID=Physo131211.2;Parent=Physo131211;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 872689 873011 . - 0 ID=Physo131211;Parent=Physo131211;rank=1 scaffold_14 . exon 872689 873105 . - . ID=Physo131211.1;Parent=Physo131211;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_14 ensembl protein_coding_gene 873324 873815 . + . ID=Physo131212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140210;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 873324 873815 . + . ID=Physo131212;Parent=Physo131212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 873324 873815 . + 0 ID=Physo131212;Parent=Physo131212;rank=1 scaffold_14 . exon 873324 873815 . + . ID=Physo131212.1;Parent=Physo131212;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 873973 874980 . - . ID=Physo131213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140211;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 873973 874980 . - . ID=Physo131213;Parent=Physo131213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 873973 873982 . - 0 ID=Physo131213;Parent=Physo131213;rank=3 scaffold_14 . exon 873973 873982 . - . ID=Physo131213.3;Parent=Physo131213;constitutive=1;ensembl_phase=2;rank=3 scaffold_14 . CDS 874039 874699 . - 0 ID=Physo131213;Parent=Physo131213;rank=2 scaffold_14 . exon 874039 874699 . - . ID=Physo131213.2;Parent=Physo131213;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_14 . CDS 874782 874980 . - 0 ID=Physo131213;Parent=Physo131213;rank=1 scaffold_14 . exon 874782 874980 . - . ID=Physo131213.1;Parent=Physo131213;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 876580 877736 . - . ID=Physo131215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140213;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 876580 877736 . - . ID=Physo131215;Parent=Physo131215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 876580 877171 . - 0 ID=Physo131215;Parent=Physo131215;rank=2 scaffold_14 . exon 876580 877171 . - . ID=Physo131215.2;Parent=Physo131215;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 877237 877736 . - 0 ID=Physo131215;Parent=Physo131215;rank=1 scaffold_14 . exon 877237 877736 . - . ID=Physo131215.1;Parent=Physo131215;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . repeat_region 879007 879055 . ? . description=trf scaffold_14 . repeat_region 880217 880394 . - . description=GypsyPi-1c_LTR scaffold_14 . repeat_region 880516 880829 . - . description=GypsyPi-1c_I-int scaffold_14 . biological_region 880768 880771 0.999 + . logic_name=eponine scaffold_14 . biological_region 880957 880960 0.999 + . logic_name=eponine scaffold_14 . repeat_region 881398 888199 . - . description=GypsyPi-1c_I-int scaffold_14 . biological_region 882625 882626 0.999 - . logic_name=eponine scaffold_14 . biological_region 882737 882742 0.999 - . logic_name=eponine scaffold_14 . biological_region 882788 882790 0.999 - . logic_name=eponine scaffold_14 . biological_region 883471 883475 0.999 + . logic_name=eponine scaffold_14 . repeat_region 885967 885986 . ? . description=trf scaffold_14 . biological_region 886047 886050 0.999 - . logic_name=eponine scaffold_14 . repeat_region 886086 886216 . ? . description=trf scaffold_14 . repeat_region 886148 886218 . ? . description=trf scaffold_14 . repeat_region 886199 886366 . ? . description=trf scaffold_14 . biological_region 887678 887681 0.999 + . logic_name=eponine scaffold_14 . biological_region 887697 887699 0.999 - . logic_name=eponine scaffold_14 . repeat_region 888200 888405 . - . description=GypsyPi-1c_LTR scaffold_14 ensembl protein_coding_gene 878646 879110 . + . ID=Physo131216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140214;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 878646 879110 . + . ID=Physo131216;Parent=Physo131216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 878646 879110 . + 0 ID=Physo131216;Parent=Physo131216;rank=1 scaffold_14 . exon 878646 879110 . + . ID=Physo131216.1;Parent=Physo131216;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 880410 882897 . + . ID=Physo131217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140215;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 880410 882897 . + . ID=Physo131217;Parent=Physo131217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 880410 880463 . + 0 ID=Physo131217;Parent=Physo131217;rank=1 scaffold_14 . exon 880410 880463 . + . ID=Physo131217.1;Parent=Physo131217;constitutive=1;rank=1 scaffold_14 . CDS 880648 882897 . + 0 ID=Physo131217;Parent=Physo131217;rank=2 scaffold_14 . exon 880648 882897 . + . ID=Physo131217.2;Parent=Physo131217;constitutive=1;rank=2 scaffold_14 ensembl protein_coding_gene 883180 888113 . - . ID=Physo131218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140216;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 883180 888113 . - . ID=Physo131218;Parent=Physo131218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 883180 883188 . - 0 ID=Physo131218;Parent=Physo131218;rank=7 scaffold_14 . exon 883180 883188 . - . ID=Physo131218.7;Parent=Physo131218;constitutive=1;rank=7 scaffold_14 . CDS 883235 884575 . - 0 ID=Physo131218;Parent=Physo131218;rank=6 scaffold_14 . exon 883235 884575 . - . ID=Physo131218.6;Parent=Physo131218;constitutive=1;rank=6 scaffold_14 . CDS 884613 885973 . - 0 ID=Physo131218;Parent=Physo131218;rank=5 scaffold_14 . exon 884613 885973 . - . ID=Physo131218.5;Parent=Physo131218;constitutive=1;ensembl_phase=1;rank=5 scaffold_14 . CDS 886017 886110 . - 0 ID=Physo131218;Parent=Physo131218;rank=4 scaffold_14 . exon 886017 886110 . - . ID=Physo131218.4;Parent=Physo131218;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_14 . CDS 886359 886397 . - 0 ID=Physo131218;Parent=Physo131218;rank=3 scaffold_14 . exon 886359 886397 . - . ID=Physo131218.3;Parent=Physo131218;constitutive=1;rank=3 scaffold_14 . CDS 886444 887033 . - 0 ID=Physo131218;Parent=Physo131218;rank=2 scaffold_14 . exon 886444 887033 . - . ID=Physo131218.2;Parent=Physo131218;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 887162 888113 . - 0 ID=Physo131218;Parent=Physo131218;rank=1 scaffold_14 . exon 887162 888113 . - . ID=Physo131218.1;Parent=Physo131218;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . repeat_region 891729 891737 . ? . description=dust scaffold_14 . repeat_region 891782 891789 . ? . description=dust scaffold_14 . repeat_region 898016 898028 . ? . description=dust scaffold_14 ensembl snoRNA_gene 895777 895848 . - . ID=EPrPSOG00000000149;biotype=snoRNA;description=Small nucleolar RNA SNORD36 [Source:RFAM%3BAcc:RF00049];external_name=SNORD36;logic_name=ncrna_eg scaffold_14 ensembl snoRNA 895777 895848 . - . ID=EPrPSOT00000000149;Parent=EPrPSOG00000000149;biotype=snoRNA;logic_name=ncrna_eg scaffold_14 ensembl snoRNA_gene 895890 895980 . - . ID=EPrPSOG00000000232;biotype=snoRNA;description=Small nucleolar RNA snR60/Z15/Z230/Z193/J17 [Source:RFAM%3BAcc:RF00309];external_name=snosnR60_Z15;logic_name=ncrna_eg scaffold_14 ensembl snoRNA 895890 895980 . - . ID=EPrPSOT00000000232;Parent=EPrPSOG00000000232;biotype=snoRNA;logic_name=ncrna_eg scaffold_14 . exon 895777 895848 . - . ID=EPrPSOE00000000149;Parent=EPrPSOT00000000149;constitutive=1;rank=1 scaffold_14 . exon 895890 895980 . - . ID=EPrPSOE00000000232;Parent=EPrPSOT00000000232;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 ensembl protein_coding_gene 889580 890787 . + . ID=Physo131219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140217;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 889580 890787 . + . ID=Physo131219;Parent=Physo131219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 889580 890079 . + 0 ID=Physo131219;Parent=Physo131219;rank=1 scaffold_14 . exon 889580 890079 . + . ID=Physo131219.1;Parent=Physo131219;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 890145 890787 . + 0 ID=Physo131219;Parent=Physo131219;rank=2 scaffold_14 . exon 890145 890787 . + . ID=Physo131219.2;Parent=Physo131219;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 ensembl protein_coding_gene 894946 895465 . + . ID=Physo131220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140218;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 894946 895465 . + . ID=Physo131220;Parent=Physo131220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . exon 894946 895465 . + . ID=Physo131220.1;Parent=Physo131220;constitutive=1;ensembl_phase=-1;rank=1 scaffold_14 . CDS 894953 895465 . + 0 ID=Physo131220;Parent=Physo131220;rank=1 scaffold_14 ensembl protein_coding_gene 896835 897548 . - . ID=Physo131221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140219;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 896835 897548 . - . ID=Physo131221;Parent=Physo131221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 896835 897548 . - 0 ID=Physo131221;Parent=Physo131221;rank=1 scaffold_14 . exon 896835 897548 . - . ID=Physo131221.1;Parent=Physo131221;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 900978 902412 . - . ID=Physo131222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140220;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 900978 902412 . - . ID=Physo131222;Parent=Physo131222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 900978 901634 . - 0 ID=Physo131222;Parent=Physo131222;rank=3 scaffold_14 . exon 900978 901634 . - . ID=Physo131222.3;Parent=Physo131222;constitutive=1;rank=3 scaffold_14 . CDS 901671 902323 . - 0 ID=Physo131222;Parent=Physo131222;rank=2 scaffold_14 . exon 901671 902323 . - . ID=Physo131222.2;Parent=Physo131222;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 902385 902412 . - 0 ID=Physo131222;Parent=Physo131222;rank=1 scaffold_14 . exon 902385 902412 . - . ID=Physo131222.1;Parent=Physo131222;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . repeat_region 909594 909654 . ? . description=dust scaffold_14 . repeat_region 909594 909654 . ? . description=trf scaffold_14 . repeat_region 910678 910701 . ? . description=trf scaffold_14 . repeat_region 916286 916373 . ? . description=trf scaffold_14 ensembl protein_coding_gene 912743 918768 . - . ID=Physo131223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140221;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 912743 918768 . - . ID=Physo131223;Parent=Physo131223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 912743 914374 . - 0 ID=Physo131223;Parent=Physo131223;rank=9 scaffold_14 . exon 912743 914374 . - . ID=Physo131223.9;Parent=Physo131223;constitutive=1;rank=9 scaffold_14 . CDS 914705 914724 . - 0 ID=Physo131223;Parent=Physo131223;rank=8 scaffold_14 . exon 914705 914724 . - . ID=Physo131223.8;Parent=Physo131223;constitutive=1;ensembl_phase=1;rank=8 scaffold_14 . CDS 915091 915652 . - 0 ID=Physo131223;Parent=Physo131223;rank=7 scaffold_14 . exon 915091 915652 . - . ID=Physo131223.7;Parent=Physo131223;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_14 . CDS 915672 916048 . - 0 ID=Physo131223;Parent=Physo131223;rank=6 scaffold_14 . exon 915672 916048 . - . ID=Physo131223.6;Parent=Physo131223;constitutive=1;ensembl_phase=1;rank=6 scaffold_14 . CDS 916082 916312 . - 0 ID=Physo131223;Parent=Physo131223;rank=5 scaffold_14 . exon 916082 916312 . - . ID=Physo131223.5;Parent=Physo131223;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_14 . CDS 916592 916822 . - 0 ID=Physo131223;Parent=Physo131223;rank=4 scaffold_14 . exon 916592 916822 . - . ID=Physo131223.4;Parent=Physo131223;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_14 . CDS 916910 916964 . - 0 ID=Physo131223;Parent=Physo131223;rank=3 scaffold_14 . exon 916910 916964 . - . ID=Physo131223.3;Parent=Physo131223;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_14 . CDS 917021 917295 . - 0 ID=Physo131223;Parent=Physo131223;rank=2 scaffold_14 . exon 917021 917295 . - . ID=Physo131223.2;Parent=Physo131223;constitutive=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 917499 918768 . - 0 ID=Physo131223;Parent=Physo131223;rank=1 scaffold_14 . exon 917499 918768 . - . ID=Physo131223.1;Parent=Physo131223;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . biological_region 920613 920615 0.999 + . logic_name=eponine scaffold_14 . biological_region 924836 924839 0.999 - . logic_name=eponine scaffold_14 . biological_region 924942 924942 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 923535 924071 . - . ID=Physo131224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140222;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 923535 924071 . - . ID=Physo131224;Parent=Physo131224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 923535 924071 . - 0 ID=Physo131224;Parent=Physo131224;rank=1 scaffold_14 . exon 923535 924071 . - . ID=Physo131224.1;Parent=Physo131224;constitutive=1;rank=1 scaffold_14 . repeat_region 934049 934059 . ? . description=dust scaffold_14 . repeat_region 937211 937400 . ? . description=trf scaffold_14 . biological_region 945647 945651 0.999 + . logic_name=eponine scaffold_14 . biological_region 945730 945734 0.999 - . logic_name=eponine scaffold_14 . biological_region 945822 945826 0.999 - . logic_name=eponine scaffold_14 . biological_region 947816 947821 0.999 + . logic_name=eponine scaffold_14 . biological_region 947834 947839 0.999 - . logic_name=eponine scaffold_14 . biological_region 947919 947923 0.999 + . logic_name=eponine scaffold_14 . biological_region 947926 947930 0.999 - . logic_name=eponine scaffold_14 . biological_region 947956 947956 0.999 - . logic_name=eponine scaffold_14 ensembl protein_coding_gene 939964 941080 . - . ID=Physo131225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140223;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 939964 941080 . - . ID=Physo131225;Parent=Physo131225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 939964 940459 . - 0 ID=Physo131225;Parent=Physo131225;rank=2 scaffold_14 . exon 939964 940459 . - . ID=Physo131225.2;Parent=Physo131225;constitutive=1;ensembl_phase=2;rank=2 scaffold_14 . CDS 940545 941080 . - 0 ID=Physo131225;Parent=Physo131225;rank=1 scaffold_14 . exon 940545 941080 . - . ID=Physo131225.1;Parent=Physo131225;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 ensembl protein_coding_gene 943614 945965 . - . ID=Physo131226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140224;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 943614 945965 . - . ID=Physo131226;Parent=Physo131226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 943614 945965 . - 0 ID=Physo131226;Parent=Physo131226;rank=1 scaffold_14 . exon 943614 945965 . - . ID=Physo131226.1;Parent=Physo131226;constitutive=1;rank=1 scaffold_14 ensembl protein_coding_gene 946509 947294 . + . ID=Physo131227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140225;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 946509 947294 . + . ID=Physo131227;Parent=Physo131227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 946509 947294 . + 0 ID=Physo131227;Parent=Physo131227;rank=1 scaffold_14 . exon 946509 947294 . + . ID=Physo131227.1;Parent=Physo131227;constitutive=1;rank=1 scaffold_14 . repeat_region 949462 949517 . ? . description=trf scaffold_14 . repeat_region 949471 949524 . ? . description=trf scaffold_14 . repeat_region 952804 952814 . ? . description=dust scaffold_14 . repeat_region 956600 956641 . ? . description=trf scaffold_14 . repeat_region 956785 956861 . ? . description=trf scaffold_14 . repeat_region 956785 956867 . ? . description=trf scaffold_14 . repeat_region 957135 957149 . ? . description=dust scaffold_14 ensembl protein_coding_gene 948743 952492 . + . ID=Physo131228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140226;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 948743 952492 . + . ID=Physo131228;Parent=Physo131228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 948743 948809 . + 0 ID=Physo131228;Parent=Physo131228;rank=1 scaffold_14 . exon 948743 948809 . + . ID=Physo131228.1;Parent=Physo131228;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_14 . CDS 949172 950971 . + 0 ID=Physo131228;Parent=Physo131228;rank=2 scaffold_14 . exon 949172 950971 . + . ID=Physo131228.2;Parent=Physo131228;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_14 . CDS 951046 952066 . + 0 ID=Physo131228;Parent=Physo131228;rank=3 scaffold_14 . exon 951046 952066 . + . ID=Physo131228.3;Parent=Physo131228;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_14 . CDS 952135 952492 . + 0 ID=Physo131228;Parent=Physo131228;rank=4 scaffold_14 . exon 952135 952492 . + . ID=Physo131228.4;Parent=Physo131228;constitutive=1;ensembl_phase=2;rank=4 scaffold_14 . biological_region 962379 962381 0.999 + . logic_name=eponine scaffold_14 ensembl protein_coding_gene 962492 963360 . + . ID=Physo131229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_140227;logic_name=jgi_physo1_1 scaffold_14 ensembl transcript 962492 963360 . + . ID=Physo131229;Parent=Physo131229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_14 . CDS 962492 962715 . + 0 ID=Physo131229;Parent=Physo131229;rank=1 scaffold_14 . exon 962492 962715 . + . ID=Physo131229.1;Parent=Physo131229;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_14 . CDS 962946 963360 . + 0 ID=Physo131229;Parent=Physo131229;rank=2 scaffold_14 . exon 962946 963360 . + . ID=Physo131229.2;Parent=Physo131229;constitutive=1;ensembl_phase=2;rank=2 ##gff-version 3 ##sequence-region scaffold_12 1 975119 scaffold_12 . biological_region 194 201 0.999 - . logic_name=eponine scaffold_12 . repeat_region 3101 3150 . ? . description=dust scaffold_12 . repeat_region 4688 4791 . ? . description=dust scaffold_12 . repeat_region 6047 6110 . ? . description=dust scaffold_12 . biological_region 9478 9487 0.999 + . logic_name=eponine scaffold_12 . biological_region 9498 9498 0.999 + . logic_name=eponine scaffold_12 . biological_region 9517 9528 0.999 - . logic_name=eponine scaffold_12 . biological_region 9527 9531 0.999 + . logic_name=eponine scaffold_12 . biological_region 9534 9540 0.999 - . logic_name=eponine scaffold_12 . biological_region 9546 9549 0.999 - . logic_name=eponine scaffold_12 . biological_region 9555 9557 0.999 - . logic_name=eponine scaffold_12 . biological_region 9584 9595 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 6190 9728 . - . ID=Physo130569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120001;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 6190 9728 . - . ID=Physo130569;Parent=Physo130569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 6190 6751 . - 0 ID=Physo130569;Parent=Physo130569;rank=3 scaffold_12 . exon 6190 6751 . - . ID=Physo130569.3;Parent=Physo130569;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 6833 9330 . - 0 ID=Physo130569;Parent=Physo130569;rank=2 scaffold_12 . exon 6833 9330 . - . ID=Physo130569.2;Parent=Physo130569;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 9414 9728 . - 0 ID=Physo130569;Parent=Physo130569;rank=1 scaffold_12 . exon 9414 9728 . - . ID=Physo130569.1;Parent=Physo130569;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 10425 11444 . + . ID=Physo130570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120002;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 10425 11444 . + . ID=Physo130570;Parent=Physo130570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 10425 11444 . + 0 ID=Physo130570;Parent=Physo130570;rank=1 scaffold_12 . exon 10425 11444 . + . ID=Physo130570.1;Parent=Physo130570;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 12509 13575 . + . ID=Physo130571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120003;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 12509 13575 . + . ID=Physo130571;Parent=Physo130571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 12509 13192 . + . ID=Physo130571.1;Parent=Physo130571;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 12515 13192 . + 0 ID=Physo130571;Parent=Physo130571;rank=1 scaffold_12 . CDS 13541 13573 . + 0 ID=Physo130571;Parent=Physo130571;rank=2 scaffold_12 . exon 13541 13575 . + . ID=Physo130571.2;Parent=Physo130571;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_12 ensembl protein_coding_gene 16274 17080 . + . ID=Physo130573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120005;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 16274 17080 . + . ID=Physo130573;Parent=Physo130573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 16274 17080 . + . ID=Physo130573.1;Parent=Physo130573;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 16304 17080 . + 0 ID=Physo130573;Parent=Physo130573;rank=1 scaffold_12 ensembl protein_coding_gene 19271 21220 . - . ID=Physo130574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120006;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 19271 21220 . - . ID=Physo130574;Parent=Physo130574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 19271 21220 . - 0 ID=Physo130574;Parent=Physo130574;rank=1 scaffold_12 . exon 19271 21220 . - . ID=Physo130574.1;Parent=Physo130574;constitutive=1;rank=1 scaffold_12 . biological_region 20822 20827 0.999 + . logic_name=eponine scaffold_12 . biological_region 20895 20900 0.999 - . logic_name=eponine scaffold_12 . biological_region 20928 20932 0.999 + . logic_name=eponine scaffold_12 . biological_region 20950 20953 0.999 + . logic_name=eponine scaffold_12 . biological_region 20983 20987 0.999 - . logic_name=eponine scaffold_12 . biological_region 21099 21102 0.999 + . logic_name=eponine scaffold_12 . biological_region 21815 21815 0.999 - . logic_name=eponine scaffold_12 . biological_region 21904 21907 0.999 + . logic_name=eponine scaffold_12 . repeat_region 21933 21964 . ? . description=dust scaffold_12 . repeat_region 22186 22193 . ? . description=dust scaffold_12 . biological_region 24629 24631 0.999 + . logic_name=eponine scaffold_12 . biological_region 24699 24699 0.999 - . logic_name=eponine scaffold_12 . biological_region 25348 25349 0.999 + . logic_name=eponine scaffold_12 . biological_region 25713 25716 0.999 + . logic_name=eponine scaffold_12 . biological_region 27404 27404 0.999 - . logic_name=eponine scaffold_12 . biological_region 28983 28984 0.999 + . logic_name=eponine scaffold_12 . biological_region 29064 29067 0.999 + . logic_name=eponine scaffold_12 . biological_region 29126 29128 0.999 - . logic_name=eponine scaffold_12 . biological_region 29137 29140 0.999 + . logic_name=eponine scaffold_12 . biological_region 29169 29176 0.999 - . logic_name=eponine scaffold_12 . biological_region 29182 29183 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 21501 22018 . - . ID=Physo108491;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120001;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 21501 22018 . - . ID=Physo108491;Parent=Physo108491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 21501 22018 . - . ID=Physo108491.1;Parent=Physo108491;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 21631 21984 . - 0 ID=Physo108491;Parent=Physo108491;rank=1 scaffold_12 ensembl protein_coding_gene 24940 29225 . - . ID=Physo108492;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120002;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 24940 29225 . - . ID=Physo108492;Parent=Physo108492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 24940 28988 . - . ID=Physo108492.2;Parent=Physo108492;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_12 . CDS 25125 28988 . - 0 ID=Physo108492;Parent=Physo108492;rank=2 scaffold_12 . CDS 29034 29225 . - 0 ID=Physo108492;Parent=Physo108492;rank=1 scaffold_12 . exon 29034 29225 . - . ID=Physo108492.1;Parent=Physo108492;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 22381 24744 . - . ID=Physo130576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120008;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 22381 24744 . - . ID=Physo130576;Parent=Physo130576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 22381 24302 . - 0 ID=Physo130576;Parent=Physo130576;rank=2 scaffold_12 . exon 22381 24302 . - . ID=Physo130576.2;Parent=Physo130576;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 24384 24744 . - 0 ID=Physo130576;Parent=Physo130576;rank=1 scaffold_12 . exon 24384 24744 . - . ID=Physo130576.1;Parent=Physo130576;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 29911 30891 . + . ID=Physo130578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120010;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 29911 30891 . + . ID=Physo130578;Parent=Physo130578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 29911 30891 . + 0 ID=Physo130578;Parent=Physo130578;rank=1 scaffold_12 . exon 29911 30891 . + . ID=Physo130578.1;Parent=Physo130578;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 30992 32707 . - . ID=Physo130579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120011;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 30992 32707 . - . ID=Physo130579;Parent=Physo130579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 30992 32707 . - 0 ID=Physo130579;Parent=Physo130579;rank=1 scaffold_12 . exon 30992 32707 . - . ID=Physo130579.1;Parent=Physo130579;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 33195 34994 . + . ID=Physo130580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120012;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 33195 34994 . + . ID=Physo130580;Parent=Physo130580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 33195 33221 . + 0 ID=Physo130580;Parent=Physo130580;rank=1 scaffold_12 . exon 33195 33221 . + . ID=Physo130580.1;Parent=Physo130580;constitutive=1;rank=1 scaffold_12 . CDS 33304 33973 . + 0 ID=Physo130580;Parent=Physo130580;rank=2 scaffold_12 . exon 33304 33973 . + . ID=Physo130580.2;Parent=Physo130580;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 34033 34994 . + 0 ID=Physo130580;Parent=Physo130580;rank=3 scaffold_12 . exon 34033 34994 . + . ID=Physo130580.3;Parent=Physo130580;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 ensembl protein_coding_gene 38066 40020 . - . ID=Physo130582;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120014;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 38066 40020 . - . ID=Physo130582;Parent=Physo130582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 38066 39725 . - 0 ID=Physo130582;Parent=Physo130582;rank=2 scaffold_12 . exon 38066 39725 . - . ID=Physo130582.2;Parent=Physo130582;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 39803 40020 . - 0 ID=Physo130582;Parent=Physo130582;rank=1 scaffold_12 . exon 39803 40020 . - . ID=Physo130582.1;Parent=Physo130582;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 35528 37919 . + . ID=Physo156176;biotype=protein_coding;external_name=C_scaffold_12000002;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 35528 37919 . + . ID=Physo156176;Parent=Physo156176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 35528 35934 . + 0 ID=Physo156176;Parent=Physo156176;rank=1 scaffold_12 . exon 35528 35934 . + . ID=Physo156176.1;Parent=Physo156176;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 36265 36726 . + 0 ID=Physo156176;Parent=Physo156176;rank=2 scaffold_12 . exon 36265 36726 . + . ID=Physo156176.2;Parent=Physo156176;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 37244 37572 . + 0 ID=Physo156176;Parent=Physo156176;rank=3 scaffold_12 . exon 37244 37572 . + . ID=Physo156176.3;Parent=Physo156176;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 37684 37919 . + 0 ID=Physo156176;Parent=Physo156176;rank=4 scaffold_12 . exon 37684 37919 . + . ID=Physo156176.4;Parent=Physo156176;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . biological_region 40330 40331 0.999 - . logic_name=eponine scaffold_12 . biological_region 40652 40656 0.999 - . logic_name=eponine scaffold_12 . biological_region 40694 40700 0.999 - . logic_name=eponine scaffold_12 . biological_region 40705 40711 0.999 - . logic_name=eponine scaffold_12 . biological_region 41810 41811 0.999 + . logic_name=eponine scaffold_12 . biological_region 42590 42593 0.999 - . logic_name=eponine scaffold_12 . biological_region 44114 44117 0.999 + . logic_name=eponine scaffold_12 . biological_region 45761 45764 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 42020 43837 . + . ID=Physo156178;biotype=protein_coding;external_name=C_scaffold_12000004;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 42020 43837 . + . ID=Physo156178;Parent=Physo156178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 42020 42713 . + 0 ID=Physo156178;Parent=Physo156178;rank=1 scaffold_12 . exon 42020 42713 . + . ID=Physo156178.1;Parent=Physo156178;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 42867 43837 . + 0 ID=Physo156178;Parent=Physo156178;rank=2 scaffold_12 . exon 42867 43837 . + . ID=Physo156178.2;Parent=Physo156178;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 ensembl protein_coding_gene 44009 46032 . + . ID=Physo156179;biotype=protein_coding;external_name=C_scaffold_12000005;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 44009 46032 . + . ID=Physo156179;Parent=Physo156179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 44009 44039 . + 0 ID=Physo156179;Parent=Physo156179;rank=1 scaffold_12 . exon 44009 44039 . + . ID=Physo156179.1;Parent=Physo156179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 44119 44296 . + 0 ID=Physo156179;Parent=Physo156179;rank=2 scaffold_12 . exon 44119 44296 . + . ID=Physo156179.2;Parent=Physo156179;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 44373 45380 . + 0 ID=Physo156179;Parent=Physo156179;rank=3 scaffold_12 . exon 44373 45380 . + . ID=Physo156179.3;Parent=Physo156179;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 45420 46032 . + 0 ID=Physo156179;Parent=Physo156179;rank=4 scaffold_12 . exon 45420 46032 . + . ID=Physo156179.4;Parent=Physo156179;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . repeat_region 50360 50468 . ? . description=trf scaffold_12 . repeat_region 50381 50469 . ? . description=trf scaffold_12 . repeat_region 50747 50778 . ? . description=trf scaffold_12 . repeat_region 51649 51658 . ? . description=dust scaffold_12 . repeat_region 52033 52058 . ? . description=dust scaffold_12 . repeat_region 53014 53036 . ? . description=dust scaffold_12 . repeat_region 53014 53036 . ? . description=trf scaffold_12 . repeat_region 55980 56037 . ? . description=dust scaffold_12 . repeat_region 55981 56009 . ? . description=trf scaffold_12 . repeat_region 55981 56010 . ? . description=trf scaffold_12 . repeat_region 56751 56770 . ? . description=trf scaffold_12 ensembl protein_coding_gene 49965 50741 . - . ID=Physo130586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120018;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 49965 50741 . - . ID=Physo130586;Parent=Physo130586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 49965 50741 . - 0 ID=Physo130586;Parent=Physo130586;rank=1 scaffold_12 . exon 49965 50741 . - . ID=Physo130586.1;Parent=Physo130586;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 51878 53117 . - . ID=Physo130587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120019;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 51878 53117 . - . ID=Physo130587;Parent=Physo130587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 51878 52024 . - 0 ID=Physo130587;Parent=Physo130587;rank=5 scaffold_12 . exon 51878 52024 . - . ID=Physo130587.5;Parent=Physo130587;constitutive=1;rank=5 scaffold_12 . CDS 52053 52079 . - 0 ID=Physo130587;Parent=Physo130587;rank=4 scaffold_12 . exon 52053 52079 . - . ID=Physo130587.4;Parent=Physo130587;constitutive=1;rank=4 scaffold_12 . CDS 52116 52458 . - 0 ID=Physo130587;Parent=Physo130587;rank=3 scaffold_12 . exon 52116 52458 . - . ID=Physo130587.3;Parent=Physo130587;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 52520 52629 . - 0 ID=Physo130587;Parent=Physo130587;rank=2 scaffold_12 . exon 52520 52629 . - . ID=Physo130587.2;Parent=Physo130587;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 52701 53117 . - 0 ID=Physo130587;Parent=Physo130587;rank=1 scaffold_12 . exon 52701 53117 . - . ID=Physo130587.1;Parent=Physo130587;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 53276 54997 . - . ID=Physo130588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120020;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 53276 54997 . - . ID=Physo130588;Parent=Physo130588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 53276 54997 . - 0 ID=Physo130588;Parent=Physo130588;rank=1 scaffold_12 . exon 53276 54997 . - . ID=Physo130588.1;Parent=Physo130588;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 55759 56391 . - . ID=Physo130589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120021;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 55759 56391 . - . ID=Physo130589;Parent=Physo130589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 55759 56391 . - 0 ID=Physo130589;Parent=Physo130589;rank=1 scaffold_12 . exon 55759 56391 . - . ID=Physo130589.1;Parent=Physo130589;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 56570 57498 . + . ID=Physo130590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120022;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 56570 57498 . + . ID=Physo130590;Parent=Physo130590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 56570 57426 . + 0 ID=Physo130590;Parent=Physo130590;rank=1 scaffold_12 . exon 56570 57426 . + . ID=Physo130590.1;Parent=Physo130590;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 57477 57498 . + 0 ID=Physo130590;Parent=Physo130590;rank=2 scaffold_12 . exon 57477 57498 . + . ID=Physo130590.2;Parent=Physo130590;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 ensembl protein_coding_gene 57580 58511 . - . ID=Physo130591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120023;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 57580 58511 . - . ID=Physo130591;Parent=Physo130591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 57580 58157 . - . ID=Physo130591.3;Parent=Physo130591;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_12 . CDS 57636 58157 . - 0 ID=Physo130591;Parent=Physo130591;rank=3 scaffold_12 . CDS 58253 58335 . - 0 ID=Physo130591;Parent=Physo130591;rank=2 scaffold_12 . exon 58253 58335 . - . ID=Physo130591.2;Parent=Physo130591;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 58484 58511 . - 0 ID=Physo130591;Parent=Physo130591;rank=1 scaffold_12 . exon 58484 58511 . - . ID=Physo130591.1;Parent=Physo130591;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 58788 60341 . - . ID=Physo130592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120024;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 58788 60341 . - . ID=Physo130592;Parent=Physo130592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 58788 60341 . - 0 ID=Physo130592;Parent=Physo130592;rank=1 scaffold_12 . exon 58788 60341 . - . ID=Physo130592.1;Parent=Physo130592;constitutive=1;rank=1 scaffold_12 . biological_region 60090 60091 0.999 + . logic_name=eponine scaffold_12 . biological_region 60096 60105 0.999 + . logic_name=eponine scaffold_12 . biological_region 60121 60129 0.999 + . logic_name=eponine scaffold_12 . biological_region 60140 60148 0.999 + . logic_name=eponine scaffold_12 . biological_region 60169 60181 0.999 - . logic_name=eponine scaffold_12 . biological_region 60199 60207 0.999 + . logic_name=eponine scaffold_12 . biological_region 60223 60226 0.999 + . logic_name=eponine scaffold_12 . biological_region 60237 60246 0.999 - . logic_name=eponine scaffold_12 . biological_region 60261 60267 0.999 + . logic_name=eponine scaffold_12 . biological_region 60340 60351 0.999 - . logic_name=eponine scaffold_12 . biological_region 60370 60372 0.999 + . logic_name=eponine scaffold_12 . biological_region 60379 60379 0.999 + . logic_name=eponine scaffold_12 . biological_region 60407 60408 0.999 + . logic_name=eponine scaffold_12 . biological_region 60502 60505 0.999 - . logic_name=eponine scaffold_12 . biological_region 62161 62164 0.999 - . logic_name=eponine scaffold_12 . biological_region 62801 62804 0.999 - . logic_name=eponine scaffold_12 . biological_region 64997 64998 0.999 + . logic_name=eponine scaffold_12 . biological_region 65059 65063 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 61804 63861 . + . ID=Physo130593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120025;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 61804 63861 . + . ID=Physo130593;Parent=Physo130593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 61804 63861 . + 0 ID=Physo130593;Parent=Physo130593;rank=1 scaffold_12 . exon 61804 63861 . + . ID=Physo130593.1;Parent=Physo130593;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 64033 68868 . - . ID=Physo130594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120026;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 64033 68868 . - . ID=Physo130594;Parent=Physo130594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 64033 65978 . - 0 ID=Physo130594;Parent=Physo130594;rank=5 scaffold_12 . exon 64033 65978 . - . ID=Physo130594.5;Parent=Physo130594;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 66186 66581 . - 0 ID=Physo130594;Parent=Physo130594;rank=4 scaffold_12 . exon 66186 66581 . - . ID=Physo130594.4;Parent=Physo130594;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 66665 66986 . - 0 ID=Physo130594;Parent=Physo130594;rank=3 scaffold_12 . exon 66665 66986 . - . ID=Physo130594.3;Parent=Physo130594;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_12 . CDS 67821 68468 . - 0 ID=Physo130594;Parent=Physo130594;rank=2 scaffold_12 . exon 67821 68468 . - . ID=Physo130594.2;Parent=Physo130594;constitutive=1;rank=2 scaffold_12 . CDS 68542 68868 . - 0 ID=Physo130594;Parent=Physo130594;rank=1 scaffold_12 . exon 68542 68868 . - . ID=Physo130594.1;Parent=Physo130594;constitutive=1;rank=1 scaffold_12 . repeat_region 70240 70248 . ? . description=dust scaffold_12 . repeat_region 77790 77809 . ? . description=trf scaffold_12 . repeat_region 78076 78118 . ? . description=trf scaffold_12 . repeat_region 79277 79328 . ? . description=trf scaffold_12 . repeat_region 79410 79417 . ? . description=dust scaffold_12 ensembl protein_coding_gene 69938 74905 . + . ID=Physo130595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120027;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 69938 74905 . + . ID=Physo130595;Parent=Physo130595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 69938 70203 . + 0 ID=Physo130595;Parent=Physo130595;rank=1 scaffold_12 . exon 69938 70203 . + . ID=Physo130595.1;Parent=Physo130595;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 70250 70399 . + 0 ID=Physo130595;Parent=Physo130595;rank=2 scaffold_12 . exon 70250 70399 . + . ID=Physo130595.2;Parent=Physo130595;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 70475 70806 . + 0 ID=Physo130595;Parent=Physo130595;rank=3 scaffold_12 . exon 70475 70806 . + . ID=Physo130595.3;Parent=Physo130595;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 70842 71172 . + 0 ID=Physo130595;Parent=Physo130595;rank=4 scaffold_12 . exon 70842 71172 . + . ID=Physo130595.4;Parent=Physo130595;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_12 . CDS 71467 72353 . + 0 ID=Physo130595;Parent=Physo130595;rank=5 scaffold_12 . exon 71467 72353 . + . ID=Physo130595.5;Parent=Physo130595;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_12 . CDS 72445 72712 . + 0 ID=Physo130595;Parent=Physo130595;rank=6 scaffold_12 . exon 72445 72712 . + . ID=Physo130595.6;Parent=Physo130595;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_12 . CDS 72748 72806 . + 0 ID=Physo130595;Parent=Physo130595;rank=7 scaffold_12 . exon 72748 72806 . + . ID=Physo130595.7;Parent=Physo130595;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_12 . CDS 72906 73082 . + 0 ID=Physo130595;Parent=Physo130595;rank=8 scaffold_12 . exon 72906 73082 . + . ID=Physo130595.8;Parent=Physo130595;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_12 . CDS 73147 73305 . + 0 ID=Physo130595;Parent=Physo130595;rank=9 scaffold_12 . exon 73147 73305 . + . ID=Physo130595.9;Parent=Physo130595;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_12 . CDS 73416 74273 . + 0 ID=Physo130595;Parent=Physo130595;rank=10 scaffold_12 . exon 73416 74273 . + . ID=Physo130595.10;Parent=Physo130595;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_12 . CDS 74422 74675 . + 0 ID=Physo130595;Parent=Physo130595;rank=11 scaffold_12 . exon 74422 74675 . + . ID=Physo130595.11;Parent=Physo130595;constitutive=1;ensembl_phase=1;rank=11 scaffold_12 . CDS 74897 74905 . + 0 ID=Physo130595;Parent=Physo130595;rank=12 scaffold_12 . exon 74897 74905 . + . ID=Physo130595.12;Parent=Physo130595;constitutive=1;rank=12 scaffold_12 ensembl protein_coding_gene 75364 75921 . - . ID=Physo130596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120028;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 75364 75921 . - . ID=Physo130596;Parent=Physo130596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 75364 75921 . - 0 ID=Physo130596;Parent=Physo130596;rank=1 scaffold_12 . exon 75364 75921 . - . ID=Physo130596.1;Parent=Physo130596;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 76595 77564 . - . ID=Physo130597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120029;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 76595 77564 . - . ID=Physo130597;Parent=Physo130597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 76595 77564 . - . ID=Physo130597.1;Parent=Physo130597;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 . CDS 76788 77564 . - 0 ID=Physo130597;Parent=Physo130597;rank=1 scaffold_12 . biological_region 80984 80985 0.999 - . logic_name=eponine scaffold_12 . biological_region 82291 82294 0.999 - . logic_name=eponine scaffold_12 . biological_region 82565 82568 0.999 - . logic_name=eponine scaffold_12 . biological_region 83939 83944 0.999 + . logic_name=eponine scaffold_12 . biological_region 83989 83989 0.999 - . logic_name=eponine scaffold_12 . biological_region 84113 84115 0.999 - . logic_name=eponine scaffold_12 . biological_region 85689 85694 0.999 - . logic_name=eponine scaffold_12 . biological_region 85814 85817 0.999 + . logic_name=eponine scaffold_12 . biological_region 86576 86580 0.999 - . logic_name=eponine scaffold_12 . biological_region 86841 86842 0.999 - . logic_name=eponine scaffold_12 . biological_region 88527 88531 0.999 + . logic_name=eponine scaffold_12 . biological_region 88600 88601 0.999 + . logic_name=eponine scaffold_12 . biological_region 88627 88630 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 81692 82760 . + . ID=Physo113170;biotype=protein_coding;external_name=estExt_Genewise1.C_120111;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 81692 82760 . + . ID=Physo113170;Parent=Physo113170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 81692 81743 . + . ID=Physo113170.1;Parent=Physo113170;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 81704 81743 . + 0 ID=Physo113170;Parent=Physo113170;rank=1 scaffold_12 . CDS 81829 82700 . + 0 ID=Physo113170;Parent=Physo113170;rank=2 scaffold_12 . exon 81829 82760 . + . ID=Physo113170.2;Parent=Physo113170;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_12 ensembl protein_coding_gene 88511 89272 . + . ID=Physo113172;biotype=protein_coding;external_name=estExt_Genewise1.C_120113;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 88511 89272 . + . ID=Physo113172;Parent=Physo113172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 88511 88949 . + . ID=Physo113172.1;Parent=Physo113172;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 88571 88949 . + 0 ID=Physo113172;Parent=Physo113172;rank=1 scaffold_12 . CDS 89022 89272 . + 0 ID=Physo113172;Parent=Physo113172;rank=2 scaffold_12 . exon 89022 89272 . + . ID=Physo113172.2;Parent=Physo113172;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 ensembl protein_coding_gene 79851 81344 . + . ID=Physo130598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120030;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 79851 81344 . + . ID=Physo130598;Parent=Physo130598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 79851 80112 . + 0 ID=Physo130598;Parent=Physo130598;rank=1 scaffold_12 . exon 79851 80112 . + . ID=Physo130598.1;Parent=Physo130598;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 80197 80267 . + 0 ID=Physo130598;Parent=Physo130598;rank=2 scaffold_12 . exon 80197 80267 . + . ID=Physo130598.2;Parent=Physo130598;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 80352 81344 . + 0 ID=Physo130598;Parent=Physo130598;rank=3 scaffold_12 . exon 80352 81344 . + . ID=Physo130598.3;Parent=Physo130598;constitutive=1;rank=3 scaffold_12 ensembl protein_coding_gene 82781 84093 . - . ID=Physo130600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120032;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 82781 84093 . - . ID=Physo130600;Parent=Physo130600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 82781 83624 . - 0 ID=Physo130600;Parent=Physo130600;rank=3 scaffold_12 . exon 82781 83624 . - . ID=Physo130600.3;Parent=Physo130600;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 83695 83796 . - 0 ID=Physo130600;Parent=Physo130600;rank=2 scaffold_12 . exon 83695 83796 . - . ID=Physo130600.2;Parent=Physo130600;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 83876 84093 . - 0 ID=Physo130600;Parent=Physo130600;rank=1 scaffold_12 . exon 83876 84093 . - . ID=Physo130600.1;Parent=Physo130600;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 85820 86850 . + . ID=Physo130602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120034;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 85820 86850 . + . ID=Physo130602;Parent=Physo130602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 85820 86809 . + 0 ID=Physo130602;Parent=Physo130602;rank=1 scaffold_12 . exon 85820 86809 . + . ID=Physo130602.1;Parent=Physo130602;constitutive=1;rank=1 scaffold_12 . CDS 86833 86850 . + 0 ID=Physo130602;Parent=Physo130602;rank=2 scaffold_12 . exon 86833 86850 . + . ID=Physo130602.2;Parent=Physo130602;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 87275 88261 . - . ID=Physo130603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120035;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 87275 88261 . - . ID=Physo130603;Parent=Physo130603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 87275 88261 . - 0 ID=Physo130603;Parent=Physo130603;rank=1 scaffold_12 . exon 87275 88261 . - . ID=Physo130603.1;Parent=Physo130603;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 89382 90933 . - . ID=Physo130604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120036;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 89382 90933 . - . ID=Physo130604;Parent=Physo130604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 89382 89600 . - 0 ID=Physo130604;Parent=Physo130604;rank=2 scaffold_12 . exon 89382 89600 . - . ID=Physo130604.2;Parent=Physo130604;constitutive=1;rank=2 scaffold_12 . CDS 89677 90933 . - 0 ID=Physo130604;Parent=Physo130604;rank=1 scaffold_12 ensembl protein_coding_gene 84309 84946 . + . ID=Physo156183;biotype=protein_coding;external_name=C_scaffold_12000009;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 84309 84946 . + . ID=Physo156183;Parent=Physo156183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 84309 84428 . + 0 ID=Physo156183;Parent=Physo156183;rank=1 scaffold_12 . exon 84309 84428 . + . ID=Physo156183.1;Parent=Physo156183;constitutive=1;rank=1 scaffold_12 . CDS 84524 84946 . + 0 ID=Physo156183;Parent=Physo156183;rank=2 scaffold_12 . exon 84524 84946 . + . ID=Physo156183.2;Parent=Physo156183;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 85238 85584 . - . ID=Physo156184;biotype=protein_coding;external_name=C_scaffold_12000010;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 85238 85584 . - . ID=Physo156184;Parent=Physo156184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 85238 85429 . - 0 ID=Physo156184;Parent=Physo156184;rank=2 scaffold_12 . exon 85238 85429 . - . ID=Physo156184.2;Parent=Physo156184;constitutive=1;rank=2 scaffold_12 . CDS 85549 85584 . - 0 ID=Physo156184;Parent=Physo156184;rank=1 scaffold_12 . exon 85549 85584 . - . ID=Physo156184.1;Parent=Physo156184;constitutive=1;rank=1 scaffold_12 . repeat_region 95376 95383 . ? . description=dust scaffold_12 . repeat_region 95557 95565 . ? . description=dust scaffold_12 . repeat_region 98102 98412 . ? . description=trf scaffold_12 . exon 89677 90933 . - . ID=Physo130604.1;Parent=Physo130604;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 92479 94529 . + . ID=Physo130605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120037;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 92479 94529 . + . ID=Physo130605;Parent=Physo130605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 92479 92899 . + 0 ID=Physo130605;Parent=Physo130605;rank=1 scaffold_12 . exon 92479 92899 . + . ID=Physo130605.1;Parent=Physo130605;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 92935 94529 . + 0 ID=Physo130605;Parent=Physo130605;rank=2 scaffold_12 . exon 92935 94529 . + . ID=Physo130605.2;Parent=Physo130605;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . biological_region 100418 100421 0.999 - . logic_name=eponine scaffold_12 . biological_region 100818 100822 0.999 + . logic_name=eponine scaffold_12 . biological_region 100887 100892 0.999 + . logic_name=eponine scaffold_12 . biological_region 100915 100918 0.999 - . logic_name=eponine scaffold_12 . repeat_region 101488 103884 . + . description=GypsyPi-1c_I-int scaffold_12 . biological_region 101810 101812 0.999 - . logic_name=eponine scaffold_12 . biological_region 105621 105621 0.999 + . logic_name=eponine scaffold_12 . biological_region 106303 106306 0.999 + . logic_name=eponine scaffold_12 . repeat_region 108894 109355 . + . description=Polinton-1_PI scaffold_12 ensembl protein_coding_gene 100150 104069 . + . ID=Physo130606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120038;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 100150 104069 . + . ID=Physo130606;Parent=Physo130606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 100150 100374 . + 0 ID=Physo130606;Parent=Physo130606;rank=1 scaffold_12 . exon 100150 100374 . + . ID=Physo130606.1;Parent=Physo130606;constitutive=1;rank=1 scaffold_12 . CDS 100415 101915 . + 0 ID=Physo130606;Parent=Physo130606;rank=2 scaffold_12 . exon 100415 101915 . + . ID=Physo130606.2;Parent=Physo130606;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 101953 102884 . + 0 ID=Physo130606;Parent=Physo130606;rank=3 scaffold_12 . exon 101953 102884 . + . ID=Physo130606.3;Parent=Physo130606;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 102957 104069 . + 0 ID=Physo130606;Parent=Physo130606;rank=4 scaffold_12 . exon 102957 104069 . + . ID=Physo130606.4;Parent=Physo130606;constitutive=1;rank=4 scaffold_12 ensembl protein_coding_gene 105335 106373 . - . ID=Physo130607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120039;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 105335 106373 . - . ID=Physo130607;Parent=Physo130607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 105335 105367 . - 0 ID=Physo130607;Parent=Physo130607;rank=3 scaffold_12 . exon 105335 105367 . - . ID=Physo130607.3;Parent=Physo130607;constitutive=1;rank=3 scaffold_12 . CDS 105525 105878 . - 0 ID=Physo130607;Parent=Physo130607;rank=2 scaffold_12 . exon 105525 105878 . - . ID=Physo130607.2;Parent=Physo130607;constitutive=1;rank=2 scaffold_12 . CDS 106098 106373 . - 0 ID=Physo130607;Parent=Physo130607;rank=1 scaffold_12 . exon 106098 106373 . - . ID=Physo130607.1;Parent=Physo130607;constitutive=1;rank=1 scaffold_12 . repeat_region 116792 116799 . ? . description=dust scaffold_12 ensembl snRNA_gene 115414 115591 . + . ID=EPrPSOG00000000266;biotype=snRNA;description=U1 spliceosomal RNA [Source:RFAM%3BAcc:RF00003];external_name=U1;logic_name=ncrna_eg scaffold_12 ensembl snRNA 115414 115591 . + . ID=EPrPSOT00000000266;Parent=EPrPSOG00000000266;biotype=snRNA;logic_name=ncrna_eg scaffold_12 . exon 115414 115591 . + . ID=EPrPSOE00000000266;Parent=EPrPSOT00000000266;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 110397 111002 . - . ID=Physo130608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120040;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 110397 111002 . - . ID=Physo130608;Parent=Physo130608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 110397 111002 . - 0 ID=Physo130608;Parent=Physo130608;rank=1 scaffold_12 . exon 110397 111002 . - . ID=Physo130608.1;Parent=Physo130608;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 112279 116587 . + . ID=Physo130609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120041;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 112279 116587 . + . ID=Physo130609;Parent=Physo130609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 112279 114814 . + 0 ID=Physo130609;Parent=Physo130609;rank=1 scaffold_12 . exon 112279 114814 . + . ID=Physo130609.1;Parent=Physo130609;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 114874 115094 . + 0 ID=Physo130609;Parent=Physo130609;rank=2 scaffold_12 . exon 114874 115094 . + . ID=Physo130609.2;Parent=Physo130609;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 115735 116472 . + 0 ID=Physo130609;Parent=Physo130609;rank=3 scaffold_12 . exon 115735 116472 . + . ID=Physo130609.3;Parent=Physo130609;constitutive=1;rank=3 scaffold_12 . CDS 116579 116587 . + 0 ID=Physo130609;Parent=Physo130609;rank=4 scaffold_12 . exon 116579 116587 . + . ID=Physo130609.4;Parent=Physo130609;constitutive=1;rank=4 scaffold_12 . biological_region 121265 121267 0.999 + . logic_name=eponine scaffold_12 . biological_region 121701 121705 0.999 + . logic_name=eponine scaffold_12 . biological_region 121757 121762 0.999 + . logic_name=eponine scaffold_12 . biological_region 121794 121795 0.999 + . logic_name=eponine scaffold_12 . biological_region 121823 121831 0.999 + . logic_name=eponine scaffold_12 . biological_region 121824 121832 0.999 - . logic_name=eponine scaffold_12 . biological_region 121846 121853 0.999 + . logic_name=eponine scaffold_12 . biological_region 121855 121858 0.999 - . logic_name=eponine scaffold_12 . biological_region 121885 121895 0.999 - . logic_name=eponine scaffold_12 . biological_region 121922 121929 0.999 - . logic_name=eponine scaffold_12 . repeat_region 124755 124795 . ? . description=trf scaffold_12 . repeat_region 125124 125181 . + . description=(TGAG)n scaffold_12 . repeat_region 125124 125181 . ? . description=trf scaffold_12 . repeat_region 126455 126501 . ? . description=trf scaffold_12 . biological_region 128836 128841 0.999 + . logic_name=eponine scaffold_12 . biological_region 128957 128958 0.999 + . logic_name=eponine scaffold_12 . biological_region 129070 129077 0.999 - . logic_name=eponine scaffold_12 ensembl snRNA_gene 122052 122212 . - . ID=EPrPSOG00000000151;biotype=snRNA;description=U1 spliceosomal RNA [Source:RFAM%3BAcc:RF00003];external_name=U1;logic_name=ncrna_eg scaffold_12 ensembl snRNA 122052 122212 . - . ID=EPrPSOT00000000151;Parent=EPrPSOG00000000151;biotype=snRNA;logic_name=ncrna_eg scaffold_12 . exon 122052 122212 . - . ID=EPrPSOE00000000151;Parent=EPrPSOT00000000151;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 120839 122195 . - . ID=Physo130610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120042;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 120839 122195 . - . ID=Physo130610;Parent=Physo130610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 120839 120846 . - 0 ID=Physo130610;Parent=Physo130610;rank=4 scaffold_12 . exon 120839 120846 . - . ID=Physo130610.4;Parent=Physo130610;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 120921 121064 . - 0 ID=Physo130610;Parent=Physo130610;rank=3 scaffold_12 . exon 120921 121064 . - . ID=Physo130610.3;Parent=Physo130610;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 121161 122018 . - 0 ID=Physo130610;Parent=Physo130610;rank=2 scaffold_12 . exon 121161 122018 . - . ID=Physo130610.2;Parent=Physo130610;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 122133 122166 . - 0 ID=Physo130610;Parent=Physo130610;rank=1 scaffold_12 . exon 122133 122195 . - . ID=Physo130610.1;Parent=Physo130610;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 126263 128136 . + . ID=Physo130611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120043;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 126263 128136 . + . ID=Physo130611;Parent=Physo130611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 126263 126916 . + 0 ID=Physo130611;Parent=Physo130611;rank=1 scaffold_12 . exon 126263 126916 . + . ID=Physo130611.1;Parent=Physo130611;constitutive=1;rank=1 scaffold_12 . CDS 127011 127356 . + 0 ID=Physo130611;Parent=Physo130611;rank=2 scaffold_12 . exon 127011 127356 . + . ID=Physo130611.2;Parent=Physo130611;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 127443 127470 . + 0 ID=Physo130611;Parent=Physo130611;rank=3 scaffold_12 . exon 127443 127470 . + . ID=Physo130611.3;Parent=Physo130611;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_12 . CDS 127590 128136 . + 0 ID=Physo130611;Parent=Physo130611;rank=4 scaffold_12 . exon 127590 128136 . + . ID=Physo130611.4;Parent=Physo130611;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 ensembl protein_coding_gene 128710 130224 . + . ID=Physo130612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120044;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 128710 130224 . + . ID=Physo130612;Parent=Physo130612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 128710 129210 . + 0 ID=Physo130612;Parent=Physo130612;rank=1 scaffold_12 . exon 128710 129210 . + . ID=Physo130612.1;Parent=Physo130612;constitutive=1;rank=1 scaffold_12 . CDS 129711 129742 . + 0 ID=Physo130612;Parent=Physo130612;rank=2 scaffold_12 . CDS 129909 130224 . + 0 ID=Physo130612;Parent=Physo130612;rank=3 scaffold_12 . repeat_region 130650 130684 . ? . description=dust scaffold_12 . repeat_region 130831 132226 . - . description=GypsyPi-1c_I-int scaffold_12 . repeat_region 132334 133557 . ? . description=dust scaffold_12 . repeat_region 136800 136849 . ? . description=dust scaffold_12 . repeat_region 138351 138899 . ? . description=dust scaffold_12 . exon 129711 129742 . + . ID=Physo130612.2;Parent=Physo130612;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . exon 129909 130224 . + . ID=Physo130612.3;Parent=Physo130612;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 ensembl protein_coding_gene 130637 131350 . - . ID=Physo130613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120045;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 130637 131350 . - . ID=Physo130613;Parent=Physo130613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 130637 131350 . - 0 ID=Physo130613;Parent=Physo130613;rank=1 scaffold_12 . exon 130637 131350 . - . ID=Physo130613.1;Parent=Physo130613;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 135808 137566 . + . ID=Physo130614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120046;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 135808 137566 . + . ID=Physo130614;Parent=Physo130614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 135808 135835 . + 0 ID=Physo130614;Parent=Physo130614;rank=1 scaffold_12 . exon 135808 135835 . + . ID=Physo130614.1;Parent=Physo130614;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 136099 136512 . + 0 ID=Physo130614;Parent=Physo130614;rank=2 scaffold_12 . exon 136099 136512 . + . ID=Physo130614.2;Parent=Physo130614;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 136577 136797 . + 0 ID=Physo130614;Parent=Physo130614;rank=3 scaffold_12 . exon 136577 136797 . + . ID=Physo130614.3;Parent=Physo130614;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 136948 137150 . + 0 ID=Physo130614;Parent=Physo130614;rank=4 scaffold_12 . exon 136948 137150 . + . ID=Physo130614.4;Parent=Physo130614;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_12 . CDS 137266 137566 . + 0 ID=Physo130614;Parent=Physo130614;rank=5 scaffold_12 . exon 137266 137566 . + . ID=Physo130614.5;Parent=Physo130614;constitutive=1;ensembl_phase=2;rank=5 scaffold_12 . repeat_region 140039 140364 . + . description=(TCTA)n scaffold_12 . repeat_region 140039 140367 . ? . description=trf scaffold_12 . biological_region 148663 148666 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 147659 151299 . + . ID=Physo130615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120047;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 147659 151299 . + . ID=Physo130615;Parent=Physo130615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 147659 148046 . + 0 ID=Physo130615;Parent=Physo130615;rank=1 scaffold_12 . exon 147659 148046 . + . ID=Physo130615.1;Parent=Physo130615;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 148143 148262 . + 0 ID=Physo130615;Parent=Physo130615;rank=2 scaffold_12 . exon 148143 148262 . + . ID=Physo130615.2;Parent=Physo130615;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 148565 149052 . + 0 ID=Physo130615;Parent=Physo130615;rank=3 scaffold_12 . exon 148565 149052 . + . ID=Physo130615.3;Parent=Physo130615;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 149165 149225 . + 0 ID=Physo130615;Parent=Physo130615;rank=4 scaffold_12 . exon 149165 149225 . + . ID=Physo130615.4;Parent=Physo130615;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_12 . CDS 149288 150980 . + 0 ID=Physo130615;Parent=Physo130615;rank=5 scaffold_12 . CDS 151074 151299 . + 0 ID=Physo130615;Parent=Physo130615;rank=6 scaffold_12 ensembl snRNA_gene 151345 151505 . - . ID=EPrPSOG00000000163;biotype=snRNA;description=U1 spliceosomal RNA [Source:RFAM%3BAcc:RF00003];external_name=U1;logic_name=ncrna_eg scaffold_12 ensembl snRNA 151345 151505 . - . ID=EPrPSOT00000000163;Parent=EPrPSOG00000000163;biotype=snRNA;logic_name=ncrna_eg scaffold_12 . exon 151345 151505 . - . ID=EPrPSOE00000000163;Parent=EPrPSOT00000000163;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . exon 149288 150980 . + . ID=Physo130615.5;Parent=Physo130615;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_12 . exon 151074 151299 . + . ID=Physo130615.6;Parent=Physo130615;constitutive=1;ensembl_phase=2;rank=6 scaffold_12 ensembl protein_coding_gene 151763 155581 . - . ID=Physo130616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120048;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 151763 155581 . - . ID=Physo130616;Parent=Physo130616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 151763 155581 . - 0 ID=Physo130616;Parent=Physo130616;rank=1 scaffold_12 . exon 151763 155581 . - . ID=Physo130616.1;Parent=Physo130616;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 155881 157911 . - . ID=Physo130617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120049;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 155881 157911 . - . ID=Physo130617;Parent=Physo130617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 155881 157911 . - 0 ID=Physo130617;Parent=Physo130617;rank=1 scaffold_12 . exon 155881 157911 . - . ID=Physo130617.1;Parent=Physo130617;constitutive=1;rank=1 scaffold_12 . biological_region 159789 159789 0.999 - . logic_name=eponine scaffold_12 . biological_region 159814 159820 0.999 - . logic_name=eponine scaffold_12 . biological_region 159870 159876 0.999 + . logic_name=eponine scaffold_12 . biological_region 159886 159893 0.999 - . logic_name=eponine scaffold_12 . biological_region 159943 159945 0.999 + . logic_name=eponine scaffold_12 . repeat_region 160075 160130 . ? . description=dust scaffold_12 . biological_region 160316 160321 0.999 - . logic_name=eponine scaffold_12 . biological_region 160372 160372 0.999 + . logic_name=eponine scaffold_12 . biological_region 160490 160497 0.999 + . logic_name=eponine scaffold_12 . biological_region 161207 161209 0.999 + . logic_name=eponine scaffold_12 . repeat_region 162069 162087 . ? . description=dust scaffold_12 . biological_region 162303 162305 0.999 - . logic_name=eponine scaffold_12 . biological_region 162462 162467 0.999 + . logic_name=eponine scaffold_12 . biological_region 162636 162640 0.999 - . logic_name=eponine scaffold_12 . biological_region 162694 162695 0.999 + . logic_name=eponine scaffold_12 . biological_region 162760 162765 0.999 + . logic_name=eponine scaffold_12 . biological_region 162778 162778 0.999 + . logic_name=eponine scaffold_12 . biological_region 162820 162821 0.999 - . logic_name=eponine scaffold_12 . biological_region 162874 162878 0.999 + . logic_name=eponine scaffold_12 . biological_region 162971 162973 0.999 - . logic_name=eponine scaffold_12 . repeat_region 163251 163297 . ? . description=trf scaffold_12 . biological_region 166383 166388 0.999 + . logic_name=eponine scaffold_12 . biological_region 166408 166414 0.999 - . logic_name=eponine scaffold_12 . biological_region 166856 166859 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 160032 160847 . + . ID=Physo130618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120050;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 160032 160847 . + . ID=Physo130618;Parent=Physo130618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 160032 160847 . + 0 ID=Physo130618;Parent=Physo130618;rank=1 scaffold_12 . exon 160032 160847 . + . ID=Physo130618.1;Parent=Physo130618;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 162415 163119 . + . ID=Physo130619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120051;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 162415 163119 . + . ID=Physo130619;Parent=Physo130619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 162415 163119 . + 0 ID=Physo130619;Parent=Physo130619;rank=1 scaffold_12 . exon 162415 163119 . + . ID=Physo130619.1;Parent=Physo130619;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 166161 170793 . + . ID=Physo130620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120052;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 166161 170793 . + . ID=Physo130620;Parent=Physo130620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 166161 166181 . + 0 ID=Physo130620;Parent=Physo130620;rank=1 scaffold_12 . exon 166161 166181 . + . ID=Physo130620.1;Parent=Physo130620;constitutive=1;rank=1 scaffold_12 . CDS 166242 166290 . + 0 ID=Physo130620;Parent=Physo130620;rank=2 scaffold_12 . exon 166242 166290 . + . ID=Physo130620.2;Parent=Physo130620;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 166398 167579 . + 0 ID=Physo130620;Parent=Physo130620;rank=3 scaffold_12 . exon 166398 167579 . + . ID=Physo130620.3;Parent=Physo130620;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 167743 167957 . + 0 ID=Physo130620;Parent=Physo130620;rank=4 scaffold_12 . exon 167743 167957 . + . ID=Physo130620.4;Parent=Physo130620;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 168022 168810 . + 0 ID=Physo130620;Parent=Physo130620;rank=5 scaffold_12 . exon 168022 168810 . + . ID=Physo130620.5;Parent=Physo130620;constitutive=1;rank=5 scaffold_12 . CDS 169030 169661 . + 0 ID=Physo130620;Parent=Physo130620;rank=6 scaffold_12 . exon 169030 169661 . + . ID=Physo130620.6;Parent=Physo130620;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_12 . CDS 169734 170094 . + 0 ID=Physo130620;Parent=Physo130620;rank=7 scaffold_12 . CDS 170164 170219 . + 0 ID=Physo130620;Parent=Physo130620;rank=8 scaffold_12 . CDS 170481 170793 . + 0 ID=Physo130620;Parent=Physo130620;rank=9 scaffold_12 . exon 169734 170094 . + . ID=Physo130620.7;Parent=Physo130620;constitutive=1;ensembl_phase=2;rank=7 scaffold_12 . exon 170164 170219 . + . ID=Physo130620.8;Parent=Physo130620;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_12 . exon 170481 170793 . + . ID=Physo130620.9;Parent=Physo130620;constitutive=1;ensembl_phase=2;rank=9 scaffold_12 ensembl protein_coding_gene 171152 172978 . + . ID=Physo130621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120053;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 171152 172978 . + . ID=Physo130621;Parent=Physo130621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 171152 172978 . + 0 ID=Physo130621;Parent=Physo130621;rank=1 scaffold_12 . exon 171152 172978 . + . ID=Physo130621.1;Parent=Physo130621;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 173338 175116 . + . ID=Physo130622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120054;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 173338 175116 . + . ID=Physo130622;Parent=Physo130622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 173338 175116 . + 0 ID=Physo130622;Parent=Physo130622;rank=1 scaffold_12 . exon 173338 175116 . + . ID=Physo130622.1;Parent=Physo130622;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 175805 182226 . + . ID=Physo156190;biotype=protein_coding;external_name=C_scaffold_12000016;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 175805 182226 . + . ID=Physo156190;Parent=Physo156190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 175805 177098 . + 0 ID=Physo156190;Parent=Physo156190;rank=1 scaffold_12 . exon 175805 177098 . + . ID=Physo156190.1;Parent=Physo156190;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 177261 177673 . + 0 ID=Physo156190;Parent=Physo156190;rank=2 scaffold_12 . exon 177261 177673 . + . ID=Physo156190.2;Parent=Physo156190;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 177719 177954 . + 0 ID=Physo156190;Parent=Physo156190;rank=3 scaffold_12 . exon 177719 177954 . + . ID=Physo156190.3;Parent=Physo156190;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 178164 178866 . + 0 ID=Physo156190;Parent=Physo156190;rank=4 scaffold_12 . exon 178164 178866 . + . ID=Physo156190.4;Parent=Physo156190;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 178897 180014 . + 0 ID=Physo156190;Parent=Physo156190;rank=5 scaffold_12 . exon 178897 180014 . + . ID=Physo156190.5;Parent=Physo156190;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_12 . CDS 180165 180251 . + 0 ID=Physo156190;Parent=Physo156190;rank=6 scaffold_12 . CDS 180279 180803 . + 0 ID=Physo156190;Parent=Physo156190;rank=7 scaffold_12 . CDS 181008 181168 . + 0 ID=Physo156190;Parent=Physo156190;rank=8 scaffold_12 . CDS 181400 181461 . + 0 ID=Physo156190;Parent=Physo156190;rank=9 scaffold_12 . CDS 181522 181897 . + 0 ID=Physo156190;Parent=Physo156190;rank=10 scaffold_12 . CDS 181943 182226 . + 0 ID=Physo156190;Parent=Physo156190;rank=11 scaffold_12 . repeat_region 183171 183207 . ? . description=dust scaffold_12 . biological_region 185481 185486 0.999 - . logic_name=eponine scaffold_12 . biological_region 185499 185506 0.999 + . logic_name=eponine scaffold_12 . biological_region 185503 185505 0.999 - . logic_name=eponine scaffold_12 . repeat_region 186090 186097 . ? . description=dust scaffold_12 ensembl protein_coding_gene 182303 184471 . - . ID=Physo130625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120057;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 182303 184471 . - . ID=Physo130625;Parent=Physo130625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 182303 182310 . - 0 ID=Physo130625;Parent=Physo130625;rank=6 scaffold_12 . exon 182303 182310 . - . ID=Physo130625.6;Parent=Physo130625;constitutive=1;ensembl_phase=1;rank=6 scaffold_12 . CDS 182426 183164 . - 0 ID=Physo130625;Parent=Physo130625;rank=5 scaffold_12 . exon 182426 183164 . - . ID=Physo130625.5;Parent=Physo130625;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_12 . CDS 183299 183380 . - 0 ID=Physo130625;Parent=Physo130625;rank=4 scaffold_12 . exon 183299 183380 . - . ID=Physo130625.4;Parent=Physo130625;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 183622 183998 . - 0 ID=Physo130625;Parent=Physo130625;rank=3 scaffold_12 . exon 183622 183998 . - . ID=Physo130625.3;Parent=Physo130625;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 184043 184199 . - 0 ID=Physo130625;Parent=Physo130625;rank=2 scaffold_12 . exon 184043 184199 . - . ID=Physo130625.2;Parent=Physo130625;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 184245 184471 . - 0 ID=Physo130625;Parent=Physo130625;rank=1 scaffold_12 . exon 184245 184471 . - . ID=Physo130625.1;Parent=Physo130625;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 187323 188423 . + . ID=Physo130627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120059;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 187323 188423 . + . ID=Physo130627;Parent=Physo130627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 187323 188423 . + 0 ID=Physo130627;Parent=Physo130627;rank=1 scaffold_12 . exon 187323 188423 . + . ID=Physo130627.1;Parent=Physo130627;constitutive=1;rank=1 scaffold_12 . exon 180165 180251 . + . ID=Physo156190.6;Parent=Physo156190;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_12 . exon 180279 180803 . + . ID=Physo156190.7;Parent=Physo156190;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_12 . exon 181008 181168 . + . ID=Physo156190.8;Parent=Physo156190;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_12 . exon 181400 181461 . + . ID=Physo156190.9;Parent=Physo156190;constitutive=1;ensembl_phase=1;rank=9 scaffold_12 . exon 181522 181897 . + . ID=Physo156190.10;Parent=Physo156190;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_12 . exon 181943 182226 . + . ID=Physo156190.11;Parent=Physo156190;constitutive=1;ensembl_phase=1;rank=11 scaffold_12 ensembl protein_coding_gene 184755 185890 . + . ID=Physo156194;biotype=protein_coding;external_name=C_scaffold_12000020;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 184755 185890 . + . ID=Physo156194;Parent=Physo156194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 184755 185471 . + 0 ID=Physo156194;Parent=Physo156194;rank=1 scaffold_12 . exon 184755 185471 . + . ID=Physo156194.1;Parent=Physo156194;constitutive=1;rank=1 scaffold_12 . CDS 185550 185739 . + 0 ID=Physo156194;Parent=Physo156194;rank=2 scaffold_12 . exon 185550 185739 . + . ID=Physo156194.2;Parent=Physo156194;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 185886 185890 . + 0 ID=Physo156194;Parent=Physo156194;rank=3 scaffold_12 . exon 185886 185890 . + . ID=Physo156194.3;Parent=Physo156194;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 ensembl protein_coding_gene 189151 190116 . + . ID=Physo130628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120060;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 189151 190116 . + . ID=Physo130628;Parent=Physo130628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 189151 190116 . + 0 ID=Physo130628;Parent=Physo130628;rank=1 scaffold_12 . exon 189151 190116 . + . ID=Physo130628.1;Parent=Physo130628;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 190589 192062 . + . ID=Physo130629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120061;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 190589 192062 . + . ID=Physo130629;Parent=Physo130629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 190589 192062 . + . ID=Physo130629.1;Parent=Physo130629;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 190614 192062 . + 0 ID=Physo130629;Parent=Physo130629;rank=1 scaffold_12 ensembl protein_coding_gene 194120 195460 . + . ID=Physo130630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120062;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 194120 195460 . + . ID=Physo130630;Parent=Physo130630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 194120 195460 . + 0 ID=Physo130630;Parent=Physo130630;rank=1 scaffold_12 . exon 194120 195460 . + . ID=Physo130630.1;Parent=Physo130630;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 196015 197328 . + . ID=Physo130631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120063;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 196015 197328 . + . ID=Physo130631;Parent=Physo130631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 196015 197328 . + 0 ID=Physo130631;Parent=Physo130631;rank=1 scaffold_12 . exon 196015 197328 . + . ID=Physo130631.1;Parent=Physo130631;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 197627 198826 . - . ID=Physo130632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120064;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 197627 198826 . - . ID=Physo130632;Parent=Physo130632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 197627 198826 . - 0 ID=Physo130632;Parent=Physo130632;rank=1 scaffold_12 . exon 197627 198826 . - . ID=Physo130632.1;Parent=Physo130632;constitutive=1;rank=1 scaffold_12 . biological_region 201673 201675 0.999 + . logic_name=eponine scaffold_12 . repeat_region 201949 201956 . ? . description=dust scaffold_12 . repeat_region 205277 205293 . ? . description=dust scaffold_12 . biological_region 205356 205357 0.999 - . logic_name=eponine scaffold_12 . biological_region 205991 205993 0.999 - . logic_name=eponine scaffold_12 . biological_region 206355 206360 0.999 - . logic_name=eponine scaffold_12 . biological_region 206490 206491 0.999 - . logic_name=eponine scaffold_12 . biological_region 206518 206519 0.999 - . logic_name=eponine scaffold_12 . biological_region 208565 208568 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 201417 201776 . - . ID=Physo130633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120065;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 201417 201776 . - . ID=Physo130633;Parent=Physo130633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 201417 201776 . - 0 ID=Physo130633;Parent=Physo130633;rank=1 scaffold_12 . exon 201417 201776 . - . ID=Physo130633.1;Parent=Physo130633;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 203191 204429 . + . ID=Physo130634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120066;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 203191 204429 . + . ID=Physo130634;Parent=Physo130634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 203191 203641 . + . ID=Physo130634.1;Parent=Physo130634;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_12 . CDS 203475 203641 . + 0 ID=Physo130634;Parent=Physo130634;rank=1 scaffold_12 . CDS 203718 204390 . + 0 ID=Physo130634;Parent=Physo130634;rank=2 scaffold_12 . exon 203718 204429 . + . ID=Physo130634.2;Parent=Physo130634;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_12 ensembl protein_coding_gene 206621 207621 . + . ID=Physo130635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120067;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 206621 207621 . + . ID=Physo130635;Parent=Physo130635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 206621 206886 . + . ID=Physo130635.1;Parent=Physo130635;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_12 . CDS 206720 206886 . + 0 ID=Physo130635;Parent=Physo130635;rank=1 scaffold_12 . CDS 206958 207621 . + 0 ID=Physo130635;Parent=Physo130635;rank=2 scaffold_12 . exon 206958 207621 . + . ID=Physo130635.2;Parent=Physo130635;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 ensembl protein_coding_gene 208162 211143 . - . ID=Physo130636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120068;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 208162 211143 . - . ID=Physo130636;Parent=Physo130636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 208162 209662 . - 0 ID=Physo130636;Parent=Physo130636;rank=3 scaffold_12 . exon 208162 209662 . - . ID=Physo130636.3;Parent=Physo130636;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 209749 210536 . - 0 ID=Physo130636;Parent=Physo130636;rank=2 scaffold_12 . CDS 210994 211143 . - 0 ID=Physo130636;Parent=Physo130636;rank=1 scaffold_12 . repeat_region 214975 214996 . ? . description=trf scaffold_12 . repeat_region 216859 216964 . ? . description=trf scaffold_12 ensembl protein_coding_gene 217505 217771 . + . ID=Physo113186;biotype=protein_coding;external_name=estExt_Genewise1.C_120127;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 217505 217771 . + . ID=Physo113186;Parent=Physo113186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 217505 217771 . + . ID=Physo113186.1;Parent=Physo113186;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 217526 217771 . + 0 ID=Physo113186;Parent=Physo113186;rank=1 scaffold_12 . exon 209749 210536 . - . ID=Physo130636.2;Parent=Physo130636;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . exon 210994 211143 . - . ID=Physo130636.1;Parent=Physo130636;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 212299 212799 . - . ID=Physo130637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120069;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 212299 212799 . - . ID=Physo130637;Parent=Physo130637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 212299 212799 . - 0 ID=Physo130637;Parent=Physo130637;rank=1 scaffold_12 . exon 212299 212799 . - . ID=Physo130637.1;Parent=Physo130637;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 213929 215443 . + . ID=Physo130638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120070;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 213929 215443 . + . ID=Physo130638;Parent=Physo130638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 213929 214891 . + 0 ID=Physo130638;Parent=Physo130638;rank=1 scaffold_12 . exon 213929 214891 . + . ID=Physo130638.1;Parent=Physo130638;constitutive=1;rank=1 scaffold_12 . CDS 214915 215352 . + 0 ID=Physo130638;Parent=Physo130638;rank=2 scaffold_12 . exon 214915 215352 . + . ID=Physo130638.2;Parent=Physo130638;constitutive=1;rank=2 scaffold_12 . CDS 215426 215443 . + 0 ID=Physo130638;Parent=Physo130638;rank=3 scaffold_12 . exon 215426 215443 . + . ID=Physo130638.3;Parent=Physo130638;constitutive=1;rank=3 scaffold_12 . repeat_region 219685 219692 . ? . description=dust scaffold_12 . repeat_region 220418 220440 . ? . description=dust scaffold_12 . biological_region 227825 227826 0.999 - . logic_name=eponine scaffold_12 . biological_region 228639 228642 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 219710 220638 . - . ID=Physo130639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120071;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 219710 220638 . - . ID=Physo130639;Parent=Physo130639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 219710 220391 . - 0 ID=Physo130639;Parent=Physo130639;rank=2 scaffold_12 . exon 219710 220391 . - . ID=Physo130639.2;Parent=Physo130639;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 220472 220638 . - 0 ID=Physo130639;Parent=Physo130639;rank=1 scaffold_12 . exon 220472 220638 . - . ID=Physo130639.1;Parent=Physo130639;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 227539 228673 . - . ID=Physo130640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120072;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 227539 228673 . - . ID=Physo130640;Parent=Physo130640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 227539 227942 . - 0 ID=Physo130640;Parent=Physo130640;rank=3 scaffold_12 . exon 227539 227942 . - . ID=Physo130640.3;Parent=Physo130640;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 227998 228256 . - 0 ID=Physo130640;Parent=Physo130640;rank=2 scaffold_12 . exon 227998 228256 . - . ID=Physo130640.2;Parent=Physo130640;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 228410 228673 . - 0 ID=Physo130640;Parent=Physo130640;rank=1 scaffold_12 . exon 228410 228673 . - . ID=Physo130640.1;Parent=Physo130640;constitutive=1;rank=1 scaffold_12 . repeat_region 235238 235264 . ? . description=trf scaffold_12 . repeat_region 236010 236055 . + . description=(ACTCG)n scaffold_12 . repeat_region 236021 236053 . ? . description=trf scaffold_12 ensembl protein_coding_gene 232181 233215 . + . ID=Physo108494;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120004;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 232181 233215 . + . ID=Physo108494;Parent=Physo108494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 232181 233215 . + . ID=Physo108494.1;Parent=Physo108494;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 232187 233092 . + 0 ID=Physo108494;Parent=Physo108494;rank=1 scaffold_12 ensembl protein_coding_gene 231117 231870 . - . ID=Physo113192;biotype=protein_coding;external_name=estExt_Genewise1.C_120133;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 231117 231870 . - . ID=Physo113192;Parent=Physo113192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 231117 231711 . - . ID=Physo113192.2;Parent=Physo113192;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_12 . CDS 231215 231711 . - 0 ID=Physo113192;Parent=Physo113192;rank=2 scaffold_12 . CDS 231842 231869 . - 0 ID=Physo113192;Parent=Physo113192;rank=1 scaffold_12 . exon 231842 231870 . - . ID=Physo113192.1;Parent=Physo113192;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 233368 234489 . + . ID=Physo130643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120075;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 233368 234489 . + . ID=Physo130643;Parent=Physo130643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 233368 234489 . + 0 ID=Physo130643;Parent=Physo130643;rank=1 scaffold_12 . exon 233368 234489 . + . ID=Physo130643.1;Parent=Physo130643;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 234570 235624 . - . ID=Physo130644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120076;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 234570 235624 . - . ID=Physo130644;Parent=Physo130644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 234570 235624 . - . ID=Physo130644.1;Parent=Physo130644;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 . CDS 234671 235624 . - 0 ID=Physo130644;Parent=Physo130644;rank=1 scaffold_12 . biological_region 239706 239708 0.999 - . logic_name=eponine scaffold_12 . biological_region 241985 241990 0.999 + . logic_name=eponine scaffold_12 . biological_region 242083 242083 0.999 - . logic_name=eponine scaffold_12 . repeat_region 247345 247408 . ? . description=dust scaffold_12 . biological_region 247507 247510 0.999 - . logic_name=eponine scaffold_12 . repeat_region 248205 248213 . ? . description=dust scaffold_12 ensembl protein_coding_gene 240361 243349 . - . ID=Physo130645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120077;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 240361 243349 . - . ID=Physo130645;Parent=Physo130645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 240361 240819 . - 0 ID=Physo130645;Parent=Physo130645;rank=5 scaffold_12 . exon 240361 240819 . - . ID=Physo130645.5;Parent=Physo130645;constitutive=1;rank=5 scaffold_12 . CDS 240915 241730 . - 0 ID=Physo130645;Parent=Physo130645;rank=4 scaffold_12 . exon 240915 241730 . - . ID=Physo130645.4;Parent=Physo130645;constitutive=1;rank=4 scaffold_12 . CDS 241841 242210 . - 0 ID=Physo130645;Parent=Physo130645;rank=3 scaffold_12 . exon 241841 242210 . - . ID=Physo130645.3;Parent=Physo130645;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 242263 243284 . - 0 ID=Physo130645;Parent=Physo130645;rank=2 scaffold_12 . exon 242263 243284 . - . ID=Physo130645.2;Parent=Physo130645;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 243347 243349 . - 0 ID=Physo130645;Parent=Physo130645;rank=1 scaffold_12 . exon 243347 243349 . - . ID=Physo130645.1;Parent=Physo130645;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 243610 244531 . - . ID=Physo130646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120078;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 243610 244531 . - . ID=Physo130646;Parent=Physo130646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 243610 244029 . - 0 ID=Physo130646;Parent=Physo130646;rank=3 scaffold_12 . exon 243610 244029 . - . ID=Physo130646.3;Parent=Physo130646;constitutive=1;rank=3 scaffold_12 . CDS 244052 244315 . - 0 ID=Physo130646;Parent=Physo130646;rank=2 scaffold_12 . exon 244052 244315 . - . ID=Physo130646.2;Parent=Physo130646;constitutive=1;rank=2 scaffold_12 . CDS 244493 244531 . - 0 ID=Physo130646;Parent=Physo130646;rank=1 scaffold_12 . exon 244493 244531 . - . ID=Physo130646.1;Parent=Physo130646;constitutive=1;rank=1 scaffold_12 . repeat_region 253760 253837 . ? . description=trf scaffold_12 . repeat_region 255806 255826 . ? . description=trf scaffold_12 ensembl protein_coding_gene 253220 254602 . + . ID=Physo108495;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120005;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 253220 254602 . + . ID=Physo108495;Parent=Physo108495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 253220 254602 . + 0 ID=Physo108495;Parent=Physo108495;rank=1 scaffold_12 . exon 253220 254602 . + . ID=Physo108495.1;Parent=Physo108495;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 257778 258925 . + . ID=Physo108496;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120006;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 257778 258925 . + . ID=Physo108496;Parent=Physo108496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 257778 258126 . + 0 ID=Physo108496;Parent=Physo108496;rank=1 scaffold_12 . exon 257778 258126 . + . ID=Physo108496.1;Parent=Physo108496;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 258195 258925 . + 0 ID=Physo108496;Parent=Physo108496;rank=2 scaffold_12 . exon 258195 258925 . + . ID=Physo108496.2;Parent=Physo108496;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 ensembl protein_coding_gene 254761 255333 . - . ID=Physo130648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120080;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 254761 255333 . - . ID=Physo130648;Parent=Physo130648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 254761 255333 . - 0 ID=Physo130648;Parent=Physo130648;rank=1 scaffold_12 . exon 254761 255333 . - . ID=Physo130648.1;Parent=Physo130648;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 256267 257238 . + . ID=Physo130649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120081;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 256267 257238 . + . ID=Physo130649;Parent=Physo130649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 256267 256430 . + 0 ID=Physo130649;Parent=Physo130649;rank=1 scaffold_12 . exon 256267 256430 . + . ID=Physo130649.1;Parent=Physo130649;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 256502 257150 . + 0 ID=Physo130649;Parent=Physo130649;rank=2 scaffold_12 . exon 256502 257238 . + . ID=Physo130649.2;Parent=Physo130649;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_12 . biological_region 258755 258758 0.999 - . logic_name=eponine scaffold_12 . repeat_region 261621 261643 . ? . description=dust scaffold_12 . repeat_region 262202 262256 . ? . description=dust scaffold_12 . biological_region 263790 263794 0.999 + . logic_name=eponine scaffold_12 . biological_region 263997 264011 0.999 - . logic_name=eponine scaffold_12 . biological_region 264036 264040 0.999 - . logic_name=eponine scaffold_12 . biological_region 264938 264941 0.999 - . logic_name=eponine scaffold_12 . biological_region 265539 265544 0.999 + . logic_name=eponine scaffold_12 . biological_region 265607 265608 0.999 - . logic_name=eponine scaffold_12 . biological_region 266843 266848 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 263491 265891 . + . ID=Physo108497;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120007;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 263491 265891 . + . ID=Physo108497;Parent=Physo108497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 263491 263952 . + . ID=Physo108497.1;Parent=Physo108497;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 263505 263952 . + 0 ID=Physo108497;Parent=Physo108497;rank=1 scaffold_12 . CDS 263992 265756 . + 0 ID=Physo108497;Parent=Physo108497;rank=2 scaffold_12 . exon 263992 265756 . + . ID=Physo108497.2;Parent=Physo108497;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 265819 265891 . + 0 ID=Physo108497;Parent=Physo108497;rank=3 scaffold_12 . exon 265819 265891 . + . ID=Physo108497.3;Parent=Physo108497;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 ensembl protein_coding_gene 265993 267203 . - . ID=Physo108498;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120008;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 265993 267203 . - . ID=Physo108498;Parent=Physo108498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 265993 266494 . - . ID=Physo108498.3;Parent=Physo108498;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_12 . CDS 266109 266494 . - 0 ID=Physo108498;Parent=Physo108498;rank=3 scaffold_12 . CDS 266960 267107 . - 0 ID=Physo108498;Parent=Physo108498;rank=2 scaffold_12 . exon 266960 267107 . - . ID=Physo108498.2;Parent=Physo108498;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 267181 267183 . - 0 ID=Physo108498;Parent=Physo108498;rank=1 scaffold_12 . exon 267181 267203 . - . ID=Physo108498.1;Parent=Physo108498;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 259083 261550 . - . ID=Physo130651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120083;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 259083 261550 . - . ID=Physo130651;Parent=Physo130651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 259083 261550 . - . ID=Physo130651.1;Parent=Physo130651;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 . CDS 259085 261550 . - 0 ID=Physo130651;Parent=Physo130651;rank=1 scaffold_12 ensembl protein_coding_gene 262702 263205 . + . ID=Physo130652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120084;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 262702 263205 . + . ID=Physo130652;Parent=Physo130652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 262702 263205 . + 0 ID=Physo130652;Parent=Physo130652;rank=1 scaffold_12 . exon 262702 263205 . + . ID=Physo130652.1;Parent=Physo130652;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 267491 269222 . + . ID=Physo130655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120087;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 267491 269222 . + . ID=Physo130655;Parent=Physo130655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 267491 267850 . + 0 ID=Physo130655;Parent=Physo130655;rank=1 scaffold_12 . exon 267491 267850 . + . ID=Physo130655.1;Parent=Physo130655;constitutive=1;rank=1 scaffold_12 . CDS 267874 268549 . + 0 ID=Physo130655;Parent=Physo130655;rank=2 scaffold_12 . exon 267874 268549 . + . ID=Physo130655.2;Parent=Physo130655;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 268609 269222 . + 0 ID=Physo130655;Parent=Physo130655;rank=3 scaffold_12 . exon 268609 269222 . + . ID=Physo130655.3;Parent=Physo130655;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . repeat_region 270256 270296 . ? . description=trf scaffold_12 . repeat_region 275219 275284 . ? . description=trf scaffold_12 ensembl protein_coding_gene 271148 272801 . + . ID=Physo130656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120088;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 271148 272801 . + . ID=Physo130656;Parent=Physo130656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 271148 271615 . + 0 ID=Physo130656;Parent=Physo130656;rank=1 scaffold_12 . exon 271148 271615 . + . ID=Physo130656.1;Parent=Physo130656;constitutive=1;rank=1 scaffold_12 . CDS 271779 272801 . + 0 ID=Physo130656;Parent=Physo130656;rank=2 scaffold_12 . exon 271779 272801 . + . ID=Physo130656.2;Parent=Physo130656;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 274548 275482 . - . ID=Physo130657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120089;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 274548 275482 . - . ID=Physo130657;Parent=Physo130657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 274548 274588 . - 0 ID=Physo130657;Parent=Physo130657;rank=4 scaffold_12 . exon 274548 274588 . - . ID=Physo130657.4;Parent=Physo130657;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 274677 274883 . - 0 ID=Physo130657;Parent=Physo130657;rank=3 scaffold_12 . exon 274677 274883 . - . ID=Physo130657.3;Parent=Physo130657;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 274917 275012 . - 0 ID=Physo130657;Parent=Physo130657;rank=2 scaffold_12 . exon 274917 275012 . - . ID=Physo130657.2;Parent=Physo130657;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 275104 275482 . - 0 ID=Physo130657;Parent=Physo130657;rank=1 scaffold_12 . exon 275104 275482 . - . ID=Physo130657.1;Parent=Physo130657;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . repeat_region 282192 282206 . ? . description=dust scaffold_12 . biological_region 284780 284783 0.999 + . logic_name=eponine scaffold_12 . repeat_region 286334 286341 . ? . description=dust scaffold_12 . repeat_region 287268 287297 . ? . description=dust scaffold_12 . repeat_region 287436 287452 . ? . description=dust scaffold_12 . biological_region 288037 288039 0.999 + . logic_name=eponine scaffold_12 . biological_region 288067 288068 0.999 + . logic_name=eponine scaffold_12 . biological_region 288502 288506 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 282929 284321 . + . ID=Physo130658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120090;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 282929 284321 . + . ID=Physo130658;Parent=Physo130658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 282929 283055 . + 0 ID=Physo130658;Parent=Physo130658;rank=1 scaffold_12 . exon 282929 283055 . + . ID=Physo130658.1;Parent=Physo130658;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 283196 283665 . + 0 ID=Physo130658;Parent=Physo130658;rank=2 scaffold_12 . exon 283196 283665 . + . ID=Physo130658.2;Parent=Physo130658;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 283818 284321 . + 0 ID=Physo130658;Parent=Physo130658;rank=3 scaffold_12 . exon 283818 284321 . + . ID=Physo130658.3;Parent=Physo130658;constitutive=1;rank=3 scaffold_12 ensembl protein_coding_gene 287635 290903 . - . ID=Physo130659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120091;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 287635 290903 . - . ID=Physo130659;Parent=Physo130659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 287635 290903 . - . ID=Physo130659.1;Parent=Physo130659;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 . CDS 287784 290903 . - 0 ID=Physo130659;Parent=Physo130659;rank=1 scaffold_12 . repeat_region 290085 290123 . ? . description=trf scaffold_12 . repeat_region 290350 290432 . ? . description=trf scaffold_12 . repeat_region 290383 290446 . ? . description=trf scaffold_12 . repeat_region 290535 290609 . ? . description=trf scaffold_12 . repeat_region 290626 290649 . ? . description=trf scaffold_12 . repeat_region 290913 290936 . ? . description=trf scaffold_12 . repeat_region 291479 291498 . ? . description=trf scaffold_12 ensembl protein_coding_gene 292395 300207 . - . ID=Physo156197;biotype=protein_coding;external_name=C_scaffold_12000023;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 292395 300207 . - . ID=Physo156197;Parent=Physo156197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 292395 293224 . - 0 ID=Physo156197;Parent=Physo156197;rank=6 scaffold_12 . exon 292395 293224 . - . ID=Physo156197.6;Parent=Physo156197;constitutive=1;ensembl_phase=1;rank=6 scaffold_12 . CDS 293758 294184 . - 0 ID=Physo156197;Parent=Physo156197;rank=5 scaffold_12 . exon 293758 294184 . - . ID=Physo156197.5;Parent=Physo156197;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_12 . CDS 294230 295628 . - 0 ID=Physo156197;Parent=Physo156197;rank=4 scaffold_12 . exon 294230 295628 . - . ID=Physo156197.4;Parent=Physo156197;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 295752 297184 . - 0 ID=Physo156197;Parent=Physo156197;rank=3 scaffold_12 . exon 295752 297184 . - . ID=Physo156197.3;Parent=Physo156197;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 297320 299977 . - 0 ID=Physo156197;Parent=Physo156197;rank=2 scaffold_12 . exon 297320 299977 . - . ID=Physo156197.2;Parent=Physo156197;constitutive=1;rank=2 scaffold_12 . CDS 300145 300207 . - 0 ID=Physo156197;Parent=Physo156197;rank=1 scaffold_12 . biological_region 299022 299026 0.999 + . logic_name=eponine scaffold_12 . biological_region 299072 299075 0.999 + . logic_name=eponine scaffold_12 . biological_region 299133 299133 0.999 - . logic_name=eponine scaffold_12 . biological_region 301819 301821 0.999 + . logic_name=eponine scaffold_12 . biological_region 306657 306658 0.999 - . logic_name=eponine scaffold_12 . biological_region 307116 307120 0.999 - . logic_name=eponine scaffold_12 . repeat_region 307532 307539 . ? . description=dust scaffold_12 ensembl protein_coding_gene 304979 306622 . - . ID=Physo108499;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120009;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 304979 306622 . - . ID=Physo108499;Parent=Physo108499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 304979 306622 . - . ID=Physo108499.1;Parent=Physo108499;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 . CDS 305120 306622 . - 0 ID=Physo108499;Parent=Physo108499;rank=1 scaffold_12 ensembl protein_coding_gene 301680 304694 . - . ID=Physo130661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120093;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 301680 304694 . - . ID=Physo130661;Parent=Physo130661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 301680 301834 . - 0 ID=Physo130661;Parent=Physo130661;rank=4 scaffold_12 . exon 301680 301834 . - . ID=Physo130661.4;Parent=Physo130661;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 302014 302998 . - 0 ID=Physo130661;Parent=Physo130661;rank=3 scaffold_12 . exon 302014 302998 . - . ID=Physo130661.3;Parent=Physo130661;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_12 . CDS 303248 304102 . - 0 ID=Physo130661;Parent=Physo130661;rank=2 scaffold_12 . exon 303248 304102 . - . ID=Physo130661.2;Parent=Physo130661;constitutive=1;rank=2 scaffold_12 . CDS 304266 304694 . - 0 ID=Physo130661;Parent=Physo130661;rank=1 scaffold_12 . exon 304266 304694 . - . ID=Physo130661.1;Parent=Physo130661;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 307560 308699 . - . ID=Physo130663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120095;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 307560 308699 . - . ID=Physo130663;Parent=Physo130663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 307560 307845 . - . ID=Physo130663.3;Parent=Physo130663;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_12 . CDS 307720 307845 . - 0 ID=Physo130663;Parent=Physo130663;rank=3 scaffold_12 . CDS 307913 308402 . - 0 ID=Physo130663;Parent=Physo130663;rank=2 scaffold_12 . exon 307913 308402 . - . ID=Physo130663.2;Parent=Physo130663;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 308522 308679 . - 0 ID=Physo130663;Parent=Physo130663;rank=1 scaffold_12 . exon 300145 300207 . - . ID=Physo156197.1;Parent=Physo156197;constitutive=1;rank=1 scaffold_12 . exon 308522 308699 . - . ID=Physo130663.1;Parent=Physo130663;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 311807 313042 . + . ID=Physo130664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120096;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 311807 313042 . + . ID=Physo130664;Parent=Physo130664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 311807 313042 . + 0 ID=Physo130664;Parent=Physo130664;rank=1 scaffold_12 . exon 311807 313042 . + . ID=Physo130664.1;Parent=Physo130664;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 315404 316666 . + . ID=Physo130665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120097;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 315404 316666 . + . ID=Physo130665;Parent=Physo130665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 315404 316666 . + 0 ID=Physo130665;Parent=Physo130665;rank=1 scaffold_12 . exon 315404 316666 . + . ID=Physo130665.1;Parent=Physo130665;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 318248 319471 . + . ID=Physo130666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120098;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 318248 319471 . + . ID=Physo130666;Parent=Physo130666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 318248 319471 . + 0 ID=Physo130666;Parent=Physo130666;rank=1 scaffold_12 . exon 318248 319471 . + . ID=Physo130666.1;Parent=Physo130666;constitutive=1;rank=1 scaffold_12 . biological_region 318962 318963 0.999 + . logic_name=eponine scaffold_12 . biological_region 318997 319002 0.999 + . logic_name=eponine scaffold_12 . biological_region 319077 319083 0.999 + . logic_name=eponine scaffold_12 . repeat_region 320113 320167 . ? . description=trf scaffold_12 . repeat_region 320113 320190 . ? . description=trf scaffold_12 . repeat_region 322664 322673 . ? . description=dust scaffold_12 . repeat_region 328111 328120 . ? . description=dust scaffold_12 ensembl protein_coding_gene 322799 326909 . + . ID=Physo130667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120099;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 322799 326909 . + . ID=Physo130667;Parent=Physo130667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 322799 323006 . + 0 ID=Physo130667;Parent=Physo130667;rank=1 scaffold_12 . exon 322799 323006 . + . ID=Physo130667.1;Parent=Physo130667;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 323064 323272 . + 0 ID=Physo130667;Parent=Physo130667;rank=2 scaffold_12 . exon 323064 323272 . + . ID=Physo130667.2;Parent=Physo130667;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 323305 323880 . + 0 ID=Physo130667;Parent=Physo130667;rank=3 scaffold_12 . exon 323305 323880 . + . ID=Physo130667.3;Parent=Physo130667;constitutive=1;rank=3 scaffold_12 . CDS 324723 325379 . + 0 ID=Physo130667;Parent=Physo130667;rank=4 scaffold_12 . exon 324723 325379 . + . ID=Physo130667.4;Parent=Physo130667;constitutive=1;rank=4 scaffold_12 . CDS 325545 326909 . + 0 ID=Physo130667;Parent=Physo130667;rank=5 scaffold_12 . exon 325545 326909 . + . ID=Physo130667.5;Parent=Physo130667;constitutive=1;rank=5 scaffold_12 ensembl protein_coding_gene 331432 332362 . + . ID=Physo130668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120100;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 331432 332362 . + . ID=Physo130668;Parent=Physo130668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 331432 331579 . + 0 ID=Physo130668;Parent=Physo130668;rank=1 scaffold_12 . exon 331432 331579 . + . ID=Physo130668.1;Parent=Physo130668;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 331725 332362 . + 0 ID=Physo130668;Parent=Physo130668;rank=2 scaffold_12 . exon 331725 332362 . + . ID=Physo130668.2;Parent=Physo130668;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . repeat_region 338844 338851 . ? . description=dust scaffold_12 . biological_region 341267 341272 0.999 - . logic_name=eponine scaffold_12 . biological_region 341310 341311 0.999 + . logic_name=eponine scaffold_12 . repeat_region 342000 342116 . + . description=GypsyPi-1c_I-int scaffold_12 . repeat_region 342134 343871 . + . description=GypsyPi-1c_I-int scaffold_12 . biological_region 342549 342550 0.999 - . logic_name=eponine scaffold_12 . biological_region 343277 343278 0.999 + . logic_name=eponine scaffold_12 . repeat_region 344141 344421 . + . description=GypsyPi-1c_I-int scaffold_12 . biological_region 344969 344973 0.999 + . logic_name=eponine scaffold_12 . biological_region 345044 345048 0.999 - . logic_name=eponine scaffold_12 . biological_region 345063 345071 0.999 - . logic_name=eponine scaffold_12 . biological_region 347255 347260 0.999 + . logic_name=eponine scaffold_12 . biological_region 347786 347792 0.999 - . logic_name=eponine scaffold_12 . biological_region 348025 348031 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 341773 344023 . + . ID=Physo130669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120101;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 341773 344023 . + . ID=Physo130669;Parent=Physo130669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 341773 342092 . + 0 ID=Physo130669;Parent=Physo130669;rank=1 scaffold_12 . exon 341773 342092 . + . ID=Physo130669.1;Parent=Physo130669;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 342112 342789 . + 0 ID=Physo130669;Parent=Physo130669;rank=2 scaffold_12 . exon 342112 342789 . + . ID=Physo130669.2;Parent=Physo130669;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 342913 343450 . + 0 ID=Physo130669;Parent=Physo130669;rank=3 scaffold_12 . exon 342913 343450 . + . ID=Physo130669.3;Parent=Physo130669;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 343649 344023 . + 0 ID=Physo130669;Parent=Physo130669;rank=4 scaffold_12 . exon 343649 344023 . + . ID=Physo130669.4;Parent=Physo130669;constitutive=1;rank=4 scaffold_12 . repeat_region 356115 356156 . ? . description=trf scaffold_12 . repeat_region 357430 357610 . + . description=GypsyPi-1c_LTR scaffold_12 ensembl protein_coding_gene 354890 356738 . - . ID=Physo130670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120102;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 354890 356738 . - . ID=Physo130670;Parent=Physo130670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 354890 355266 . - 0 ID=Physo130670;Parent=Physo130670;rank=5 scaffold_12 . exon 354890 355266 . - . ID=Physo130670.5;Parent=Physo130670;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 355362 355568 . - 0 ID=Physo130670;Parent=Physo130670;rank=4 scaffold_12 . exon 355362 355568 . - . ID=Physo130670.4;Parent=Physo130670;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 355715 355894 . - 0 ID=Physo130670;Parent=Physo130670;rank=3 scaffold_12 . exon 355715 355894 . - . ID=Physo130670.3;Parent=Physo130670;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 356021 356297 . - 0 ID=Physo130670;Parent=Physo130670;rank=2 scaffold_12 . exon 356021 356297 . - . ID=Physo130670.2;Parent=Physo130670;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 356334 356738 . - 0 ID=Physo130670;Parent=Physo130670;rank=1 scaffold_12 . exon 356334 356738 . - . ID=Physo130670.1;Parent=Physo130670;constitutive=1;rank=1 scaffold_12 . repeat_region 359551 359559 . ? . description=dust scaffold_12 . repeat_region 359755 359773 . ? . description=dust scaffold_12 . biological_region 366076 366078 0.999 + . logic_name=eponine scaffold_12 . biological_region 366246 366250 0.999 - . logic_name=eponine scaffold_12 . biological_region 366410 366410 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 361156 363134 . - . ID=Physo130671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120103;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 361156 363134 . - . ID=Physo130671;Parent=Physo130671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 361156 361178 . - 0 ID=Physo130671;Parent=Physo130671;rank=3 scaffold_12 . exon 361156 361178 . - . ID=Physo130671.3;Parent=Physo130671;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 361286 362508 . - 0 ID=Physo130671;Parent=Physo130671;rank=2 scaffold_12 . exon 361286 362508 . - . ID=Physo130671.2;Parent=Physo130671;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 362878 363134 . - 0 ID=Physo130671;Parent=Physo130671;rank=1 scaffold_12 . exon 362878 363134 . - . ID=Physo130671.1;Parent=Physo130671;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 365903 367237 . + . ID=Physo156198;biotype=protein_coding;external_name=C_scaffold_12000024;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 365903 367237 . + . ID=Physo156198;Parent=Physo156198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 365903 366156 . + 0 ID=Physo156198;Parent=Physo156198;rank=1 scaffold_12 . exon 365903 366156 . + . ID=Physo156198.1;Parent=Physo156198;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 366235 367237 . + 0 ID=Physo156198;Parent=Physo156198;rank=2 scaffold_12 . exon 366235 367237 . + . ID=Physo156198.2;Parent=Physo156198;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . repeat_region 371826 371854 . ? . description=trf scaffold_12 ensembl protein_coding_gene 371480 372814 . + . ID=Physo130674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120106;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 371480 372814 . + . ID=Physo130674;Parent=Physo130674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 371480 372814 . + 0 ID=Physo130674;Parent=Physo130674;rank=1 scaffold_12 . exon 371480 372814 . + . ID=Physo130674.1;Parent=Physo130674;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 373182 374591 . + . ID=Physo130675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120107;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 373182 374591 . + . ID=Physo130675;Parent=Physo130675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 373182 374591 . + 0 ID=Physo130675;Parent=Physo130675;rank=1 scaffold_12 . exon 373182 374591 . + . ID=Physo130675.1;Parent=Physo130675;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 375081 376755 . - . ID=Physo130676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120108;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 375081 376755 . - . ID=Physo130676;Parent=Physo130676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 375081 375842 . - 0 ID=Physo130676;Parent=Physo130676;rank=2 scaffold_12 . exon 375081 375842 . - . ID=Physo130676.2;Parent=Physo130676;constitutive=1;rank=2 scaffold_12 . CDS 376217 376717 . - 0 ID=Physo130676;Parent=Physo130676;rank=1 scaffold_12 . exon 376217 376755 . - . ID=Physo130676.1;Parent=Physo130676;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 368304 369221 . + . ID=Physo156199;biotype=protein_coding;external_name=C_scaffold_12000025;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 368304 369221 . + . ID=Physo156199;Parent=Physo156199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 368304 368839 . + 0 ID=Physo156199;Parent=Physo156199;rank=1 scaffold_12 . exon 368304 368839 . + . ID=Physo156199.1;Parent=Physo156199;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 368990 369221 . + 0 ID=Physo156199;Parent=Physo156199;rank=2 scaffold_12 . exon 368990 369221 . + . ID=Physo156199.2;Parent=Physo156199;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 ensembl protein_coding_gene 369375 370648 . - . ID=Physo156200;biotype=protein_coding;external_name=C_scaffold_12000026;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 369375 370648 . - . ID=Physo156200;Parent=Physo156200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 369375 369917 . - 0 ID=Physo156200;Parent=Physo156200;rank=3 scaffold_12 . exon 369375 369917 . - . ID=Physo156200.3;Parent=Physo156200;constitutive=1;rank=3 scaffold_12 . CDS 369990 370145 . - 0 ID=Physo156200;Parent=Physo156200;rank=2 scaffold_12 . exon 369990 370145 . - . ID=Physo156200.2;Parent=Physo156200;constitutive=1;rank=2 scaffold_12 . CDS 370217 370648 . - 0 ID=Physo156200;Parent=Physo156200;rank=1 scaffold_12 . exon 370217 370648 . - . ID=Physo156200.1;Parent=Physo156200;constitutive=1;rank=1 scaffold_12 . biological_region 378745 378750 0.999 - . logic_name=eponine scaffold_12 . biological_region 378946 378951 0.999 + . logic_name=eponine scaffold_12 . biological_region 379047 379050 0.999 + . logic_name=eponine scaffold_12 . biological_region 379655 379657 0.999 - . logic_name=eponine scaffold_12 . biological_region 380227 380227 0.999 + . logic_name=eponine scaffold_12 . biological_region 381787 381789 0.999 + . logic_name=eponine scaffold_12 . biological_region 382067 382069 0.999 + . logic_name=eponine scaffold_12 . biological_region 382085 382086 0.999 - . logic_name=eponine scaffold_12 . biological_region 382236 382237 0.999 + . logic_name=eponine scaffold_12 . biological_region 382342 382343 0.999 - . logic_name=eponine scaffold_12 . biological_region 382553 382557 0.999 - . logic_name=eponine scaffold_12 . biological_region 382577 382581 0.999 - . logic_name=eponine scaffold_12 . biological_region 382633 382634 0.999 + . logic_name=eponine scaffold_12 . biological_region 383281 383283 0.999 - . logic_name=eponine scaffold_12 . biological_region 384645 384647 0.999 + . logic_name=eponine scaffold_12 . biological_region 385573 385577 0.999 - . logic_name=eponine scaffold_12 . biological_region 385579 385583 0.999 + . logic_name=eponine scaffold_12 . biological_region 385592 385600 0.999 - . logic_name=eponine scaffold_12 . biological_region 385650 385654 0.999 + . logic_name=eponine scaffold_12 . biological_region 387518 387520 0.999 + . logic_name=eponine scaffold_12 . biological_region 387957 387960 0.999 + . logic_name=eponine scaffold_12 . biological_region 388027 388029 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 378389 379708 . - . ID=Physo130677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120109;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 378389 379708 . - . ID=Physo130677;Parent=Physo130677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 378389 379708 . - 0 ID=Physo130677;Parent=Physo130677;rank=1 scaffold_12 . exon 378389 379708 . - . ID=Physo130677.1;Parent=Physo130677;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 381485 382804 . - . ID=Physo130678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120110;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 381485 382804 . - . ID=Physo130678;Parent=Physo130678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 381485 382804 . - 0 ID=Physo130678;Parent=Physo130678;rank=1 scaffold_12 . exon 381485 382804 . - . ID=Physo130678.1;Parent=Physo130678;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 384084 385917 . - . ID=Physo130679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120111;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 384084 385917 . - . ID=Physo130679;Parent=Physo130679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 384084 384833 . - 0 ID=Physo130679;Parent=Physo130679;rank=6 scaffold_12 . exon 384084 384833 . - . ID=Physo130679.6;Parent=Physo130679;constitutive=1;rank=6 scaffold_12 . CDS 384854 385076 . - 0 ID=Physo130679;Parent=Physo130679;rank=5 scaffold_12 . exon 384854 385076 . - . ID=Physo130679.5;Parent=Physo130679;constitutive=1;ensembl_phase=2;rank=5 scaffold_12 . CDS 385130 385192 . - 0 ID=Physo130679;Parent=Physo130679;rank=4 scaffold_12 . exon 385130 385192 . - . ID=Physo130679.4;Parent=Physo130679;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_12 . CDS 385215 385461 . - 0 ID=Physo130679;Parent=Physo130679;rank=3 scaffold_12 . exon 385215 385461 . - . ID=Physo130679.3;Parent=Physo130679;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_12 . CDS 385497 385563 . - 0 ID=Physo130679;Parent=Physo130679;rank=2 scaffold_12 . exon 385497 385563 . - . ID=Physo130679.2;Parent=Physo130679;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 385837 385917 . - 0 ID=Physo130679;Parent=Physo130679;rank=1 scaffold_12 . exon 385837 385917 . - . ID=Physo130679.1;Parent=Physo130679;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 386846 388129 . - . ID=Physo130680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120112;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 386846 388129 . - . ID=Physo130680;Parent=Physo130680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 386846 388129 . - 0 ID=Physo130680;Parent=Physo130680;rank=1 scaffold_12 . exon 386846 388129 . - . ID=Physo130680.1;Parent=Physo130680;constitutive=1;rank=1 scaffold_12 . repeat_region 393172 393191 . ? . description=trf scaffold_12 ensembl protein_coding_gene 389411 390697 . - . ID=Physo130681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120113;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 389411 390697 . - . ID=Physo130681;Parent=Physo130681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 389411 390697 . - 0 ID=Physo130681;Parent=Physo130681;rank=1 scaffold_12 . exon 389411 390697 . - . ID=Physo130681.1;Parent=Physo130681;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 391500 392764 . - . ID=Physo130682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120114;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 391500 392764 . - . ID=Physo130682;Parent=Physo130682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 391500 392157 . - 0 ID=Physo130682;Parent=Physo130682;rank=3 scaffold_12 . exon 391500 392157 . - . ID=Physo130682.3;Parent=Physo130682;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 392223 392489 . - 0 ID=Physo130682;Parent=Physo130682;rank=2 scaffold_12 . exon 392223 392489 . - . ID=Physo130682.2;Parent=Physo130682;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 392562 392764 . - 0 ID=Physo130682;Parent=Physo130682;rank=1 scaffold_12 . exon 392562 392764 . - . ID=Physo130682.1;Parent=Physo130682;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 394392 395752 . + . ID=Physo130683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120115;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 394392 395752 . + . ID=Physo130683;Parent=Physo130683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 394392 395581 . + 0 ID=Physo130683;Parent=Physo130683;rank=1 scaffold_12 . exon 394392 395581 . + . ID=Physo130683.1;Parent=Physo130683;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 395716 395752 . + 0 ID=Physo130683;Parent=Physo130683;rank=2 scaffold_12 . exon 395716 395752 . + . ID=Physo130683.2;Parent=Physo130683;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 ensembl pseudogene 397092 397874 . + . ID=Physo130684;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_120116;logic_name=jgi_physo1_1 scaffold_12 ensembl pseudogene 397092 397874 . + . ID=Physo130684;Parent=Physo130684;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_12 . exon 397092 397874 . + . ID=Physo130684.1;Parent=Physo130684;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_12 . biological_region 410165 410169 0.999 - . logic_name=eponine scaffold_12 . biological_region 412000 412002 0.999 + . logic_name=eponine scaffold_12 . repeat_region 412221 412256 . ? . description=trf scaffold_12 . repeat_region 412261 412291 . ? . description=trf scaffold_12 . repeat_region 412331 412383 . ? . description=trf scaffold_12 . repeat_region 412331 412383 . ? . description=trf scaffold_12 ensembl protein_coding_gene 408074 411852 . + . ID=Physo130685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120117;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 408074 411852 . + . ID=Physo130685;Parent=Physo130685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 408074 408862 . + 0 ID=Physo130685;Parent=Physo130685;rank=1 scaffold_12 . exon 408074 408862 . + . ID=Physo130685.1;Parent=Physo130685;constitutive=1;rank=1 scaffold_12 . CDS 408923 409108 . + 0 ID=Physo130685;Parent=Physo130685;rank=2 scaffold_12 . exon 408923 409108 . + . ID=Physo130685.2;Parent=Physo130685;constitutive=1;rank=2 scaffold_12 . CDS 409139 411120 . + 0 ID=Physo130685;Parent=Physo130685;rank=3 scaffold_12 . exon 409139 411120 . + . ID=Physo130685.3;Parent=Physo130685;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 411150 411852 . + 0 ID=Physo130685;Parent=Physo130685;rank=4 scaffold_12 . exon 411150 411852 . + . ID=Physo130685.4;Parent=Physo130685;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 ensembl protein_coding_gene 414729 416045 . + . ID=Physo130687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120119;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 414729 416045 . + . ID=Physo130687;Parent=Physo130687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 414729 416045 . + 0 ID=Physo130687;Parent=Physo130687;rank=1 scaffold_12 . exon 414729 416045 . + . ID=Physo130687.1;Parent=Physo130687;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 416321 417601 . - . ID=Physo130688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120120;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 416321 417601 . - . ID=Physo130688;Parent=Physo130688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 416321 417601 . - 0 ID=Physo130688;Parent=Physo130688;rank=1 scaffold_12 . exon 416321 417601 . - . ID=Physo130688.1;Parent=Physo130688;constitutive=1;rank=1 scaffold_12 . repeat_region 419316 419325 . ? . description=dust scaffold_12 . repeat_region 419779 419786 . ? . description=dust scaffold_12 ensembl tRNA_gene 423126 423197 . + . ID=EPrPSOG00000000274;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_12 ensembl transcript 423126 423197 . + . ID=EPrPSOT00000000274;Parent=EPrPSOG00000000274;biotype=tRNA;logic_name=ncrna_eg scaffold_12 . exon 423126 423197 . + . ID=EPrPSOE00000000274;Parent=EPrPSOT00000000274;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 421903 422675 . - . ID=Physo130689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120121;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 421903 422675 . - . ID=Physo130689;Parent=Physo130689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 421903 422213 . - 0 ID=Physo130689;Parent=Physo130689;rank=2 scaffold_12 . exon 421903 422213 . - . ID=Physo130689.2;Parent=Physo130689;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 422324 422675 . - 0 ID=Physo130689;Parent=Physo130689;rank=1 scaffold_12 . exon 422324 422675 . - . ID=Physo130689.1;Parent=Physo130689;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 423647 424991 . - . ID=Physo130690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120122;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 423647 424991 . - . ID=Physo130690;Parent=Physo130690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 423647 423883 . - 0 ID=Physo130690;Parent=Physo130690;rank=3 scaffold_12 . exon 423647 423883 . - . ID=Physo130690.3;Parent=Physo130690;constitutive=1;rank=3 scaffold_12 . CDS 424177 424554 . - 0 ID=Physo130690;Parent=Physo130690;rank=2 scaffold_12 . exon 424177 424554 . - . ID=Physo130690.2;Parent=Physo130690;constitutive=1;rank=2 scaffold_12 . CDS 424617 424991 . - 0 ID=Physo130690;Parent=Physo130690;rank=1 scaffold_12 . exon 424617 424991 . - . ID=Physo130690.1;Parent=Physo130690;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 427671 428937 . - . ID=Physo130691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120123;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 427671 428937 . - . ID=Physo130691;Parent=Physo130691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 427671 428579 . - 0 ID=Physo130691;Parent=Physo130691;rank=2 scaffold_12 . exon 427671 428579 . - . ID=Physo130691.2;Parent=Physo130691;constitutive=1;rank=2 scaffold_12 . CDS 428848 428937 . - 0 ID=Physo130691;Parent=Physo130691;rank=1 scaffold_12 . biological_region 428277 428278 0.999 + . logic_name=eponine scaffold_12 . biological_region 432167 432172 0.999 + . logic_name=eponine scaffold_12 . repeat_region 435958 436063 . ? . description=trf scaffold_12 . repeat_region 436012 436092 . ? . description=trf scaffold_12 . repeat_region 436226 436274 . ? . description=trf scaffold_12 . exon 428848 428937 . - . ID=Physo130691.1;Parent=Physo130691;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 430007 431299 . - . ID=Physo130692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120124;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 430007 431299 . - . ID=Physo130692;Parent=Physo130692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 430007 431299 . - 0 ID=Physo130692;Parent=Physo130692;rank=1 scaffold_12 . exon 430007 431299 . - . ID=Physo130692.1;Parent=Physo130692;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 435959 436427 . + . ID=Physo130693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120125;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 435959 436427 . + . ID=Physo130693;Parent=Physo130693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 435959 436427 . + . ID=Physo130693.1;Parent=Physo130693;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 436037 436345 . + 0 ID=Physo130693;Parent=Physo130693;rank=1 scaffold_12 . repeat_region 439985 439999 . ? . description=dust scaffold_12 . repeat_region 440090 440104 . ? . description=dust scaffold_12 . repeat_region 444626 444788 . ? . description=dust scaffold_12 . repeat_region 446586 446673 . ? . description=dust scaffold_12 . repeat_region 447648 447685 . ? . description=dust scaffold_12 ensembl protein_coding_gene 444825 445616 . - . ID=Physo130694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120126;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 444825 445616 . - . ID=Physo130694;Parent=Physo130694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 444825 445616 . - 0 ID=Physo130694;Parent=Physo130694;rank=1 scaffold_12 . exon 444825 445616 . - . ID=Physo130694.1;Parent=Physo130694;constitutive=1;rank=1 scaffold_12 . biological_region 449211 449215 0.999 - . logic_name=eponine scaffold_12 . repeat_region 450394 450415 . ? . description=trf scaffold_12 . biological_region 453673 453676 0.999 + . logic_name=eponine scaffold_12 . biological_region 453693 453699 0.999 + . logic_name=eponine scaffold_12 . biological_region 453765 453768 0.999 - . logic_name=eponine scaffold_12 . biological_region 453792 453795 0.999 - . logic_name=eponine scaffold_12 . biological_region 454328 454329 0.999 + . logic_name=eponine scaffold_12 . repeat_region 454960 455195 . - . description=GypsyPi-1c_I-int scaffold_12 . biological_region 455011 455013 0.999 + . logic_name=eponine scaffold_12 . repeat_region 455508 457881 . - . description=GypsyPi-1c_I-int scaffold_12 ensembl protein_coding_gene 455196 458227 . - . ID=Physo130695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120127;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 455196 458227 . - . ID=Physo130695;Parent=Physo130695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 455196 455199 . - 0 ID=Physo130695;Parent=Physo130695;rank=7 scaffold_12 . exon 455196 455199 . - . ID=Physo130695.7;Parent=Physo130695;constitutive=1;ensembl_phase=2;rank=7 scaffold_12 . CDS 455243 455487 . - 0 ID=Physo130695;Parent=Physo130695;rank=6 scaffold_12 . exon 455243 455487 . - . ID=Physo130695.6;Parent=Physo130695;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_12 . CDS 455609 456025 . - 0 ID=Physo130695;Parent=Physo130695;rank=5 scaffold_12 . exon 455609 456025 . - . ID=Physo130695.5;Parent=Physo130695;constitutive=1;rank=5 scaffold_12 . CDS 456094 457002 . - 0 ID=Physo130695;Parent=Physo130695;rank=4 scaffold_12 . exon 456094 457002 . - . ID=Physo130695.4;Parent=Physo130695;constitutive=1;rank=4 scaffold_12 . CDS 457125 457832 . - 0 ID=Physo130695;Parent=Physo130695;rank=3 scaffold_12 . exon 457125 457832 . - . ID=Physo130695.3;Parent=Physo130695;constitutive=1;rank=3 scaffold_12 . CDS 457879 458099 . - 0 ID=Physo130695;Parent=Physo130695;rank=2 scaffold_12 . CDS 458152 458227 . - 0 ID=Physo130695;Parent=Physo130695;rank=1 scaffold_12 . repeat_region 458461 458469 . ? . description=dust scaffold_12 . repeat_region 459398 459600 . ? . description=dust scaffold_12 . repeat_region 459953 459963 . ? . description=dust scaffold_12 . repeat_region 460890 461801 . ? . description=dust scaffold_12 . repeat_region 462528 463179 . ? . description=dust scaffold_12 . exon 457879 458099 . - . ID=Physo130695.2;Parent=Physo130695;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . exon 458152 458227 . - . ID=Physo130695.1;Parent=Physo130695;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 463446 465245 . + . ID=Physo130696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120128;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 463446 465245 . + . ID=Physo130696;Parent=Physo130696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 463446 464215 . + 0 ID=Physo130696;Parent=Physo130696;rank=1 scaffold_12 . exon 463446 464215 . + . ID=Physo130696.1;Parent=Physo130696;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 464369 465245 . + 0 ID=Physo130696;Parent=Physo130696;rank=2 scaffold_12 . exon 464369 465245 . + . ID=Physo130696.2;Parent=Physo130696;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 ensembl protein_coding_gene 465462 465998 . + . ID=Physo130697;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120129;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 465462 465998 . + . ID=Physo130697;Parent=Physo130697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 465462 465998 . + 0 ID=Physo130697;Parent=Physo130697;rank=1 scaffold_12 . exon 465462 465998 . + . ID=Physo130697.1;Parent=Physo130697;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 466570 475968 . - . ID=Physo130698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120130;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 466570 475968 . - . ID=Physo130698;Parent=Physo130698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 466570 466857 . - 0 ID=Physo130698;Parent=Physo130698;rank=16 scaffold_12 . exon 466570 466857 . - . ID=Physo130698.16;Parent=Physo130698;constitutive=1;rank=16 scaffold_12 . CDS 467259 468179 . - 0 ID=Physo130698;Parent=Physo130698;rank=15 scaffold_12 . exon 467259 468179 . - . ID=Physo130698.15;Parent=Physo130698;constitutive=1;rank=15 scaffold_12 . CDS 468216 468419 . - 0 ID=Physo130698;Parent=Physo130698;rank=14 scaffold_12 . CDS 468679 469332 . - 0 ID=Physo130698;Parent=Physo130698;rank=13 scaffold_12 . CDS 469731 470601 . - 0 ID=Physo130698;Parent=Physo130698;rank=12 scaffold_12 . CDS 470677 471172 . - 0 ID=Physo130698;Parent=Physo130698;rank=11 scaffold_12 . CDS 471366 471579 . - 0 ID=Physo130698;Parent=Physo130698;rank=10 scaffold_12 . CDS 471718 471766 . - 0 ID=Physo130698;Parent=Physo130698;rank=9 scaffold_12 . CDS 471821 472226 . - 0 ID=Physo130698;Parent=Physo130698;rank=8 scaffold_12 . CDS 472265 472296 . - 0 ID=Physo130698;Parent=Physo130698;rank=7 scaffold_12 . CDS 472394 473315 . - 0 ID=Physo130698;Parent=Physo130698;rank=6 scaffold_12 . CDS 473554 473683 . - 0 ID=Physo130698;Parent=Physo130698;rank=5 scaffold_12 . CDS 473990 474034 . - 0 ID=Physo130698;Parent=Physo130698;rank=4 scaffold_12 . CDS 474064 474587 . - 0 ID=Physo130698;Parent=Physo130698;rank=3 scaffold_12 . CDS 474891 475703 . - 0 ID=Physo130698;Parent=Physo130698;rank=2 scaffold_12 . CDS 475761 475968 . - 0 ID=Physo130698;Parent=Physo130698;rank=1 scaffold_12 . repeat_region 471853 471895 . ? . description=trf scaffold_12 . repeat_region 477032 477074 . ? . description=trf scaffold_12 . repeat_region 477388 477429 . ? . description=trf scaffold_12 . exon 468216 468419 . - . ID=Physo130698.14;Parent=Physo130698;constitutive=1;rank=14 scaffold_12 . exon 468679 469332 . - . ID=Physo130698.13;Parent=Physo130698;constitutive=1;rank=13 scaffold_12 . exon 469731 470601 . - . ID=Physo130698.12;Parent=Physo130698;constitutive=1;ensembl_phase=2;rank=12 scaffold_12 . exon 470677 471172 . - . ID=Physo130698.11;Parent=Physo130698;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_12 . exon 471366 471579 . - . ID=Physo130698.10;Parent=Physo130698;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_12 . exon 471718 471766 . - . ID=Physo130698.9;Parent=Physo130698;constitutive=1;ensembl_phase=2;rank=9 scaffold_12 . exon 471821 472226 . - . ID=Physo130698.8;Parent=Physo130698;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_12 . exon 472265 472296 . - . ID=Physo130698.7;Parent=Physo130698;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_12 . exon 472394 473315 . - . ID=Physo130698.6;Parent=Physo130698;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_12 . exon 473554 473683 . - . ID=Physo130698.5;Parent=Physo130698;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_12 . exon 473990 474034 . - . ID=Physo130698.4;Parent=Physo130698;constitutive=1;rank=4 scaffold_12 . exon 474064 474587 . - . ID=Physo130698.3;Parent=Physo130698;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . exon 474891 475703 . - . ID=Physo130698.2;Parent=Physo130698;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_12 . exon 475761 475968 . - . ID=Physo130698.1;Parent=Physo130698;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . repeat_region 478086 478099 . ? . description=dust scaffold_12 . repeat_region 481278 481327 . ? . description=dust scaffold_12 . repeat_region 482668 490364 . ? . description=dust scaffold_12 ensembl protein_coding_gene 478545 479639 . + . ID=Physo130699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120131;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 478545 479639 . + . ID=Physo130699;Parent=Physo130699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 478545 479639 . + 0 ID=Physo130699;Parent=Physo130699;rank=1 scaffold_12 . exon 478545 479639 . + . ID=Physo130699.1;Parent=Physo130699;constitutive=1;rank=1 scaffold_12 . repeat_region 490802 490843 . ? . description=trf scaffold_12 . repeat_region 492178 492220 . ? . description=trf scaffold_12 ensembl protein_coding_gene 493473 497315 . + . ID=Physo130700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120132;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 493473 497315 . + . ID=Physo130700;Parent=Physo130700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 493473 493844 . + 0 ID=Physo130700;Parent=Physo130700;rank=1 scaffold_12 . exon 493473 493844 . + . ID=Physo130700.1;Parent=Physo130700;constitutive=1;rank=1 scaffold_12 . CDS 494243 495670 . + 0 ID=Physo130700;Parent=Physo130700;rank=2 scaffold_12 . exon 494243 495670 . + . ID=Physo130700.2;Parent=Physo130700;constitutive=1;rank=2 scaffold_12 . CDS 495707 496626 . + 0 ID=Physo130700;Parent=Physo130700;rank=3 scaffold_12 . exon 495707 496626 . + . ID=Physo130700.3;Parent=Physo130700;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 496646 496774 . + 0 ID=Physo130700;Parent=Physo130700;rank=4 scaffold_12 . exon 496646 496774 . + . ID=Physo130700.4;Parent=Physo130700;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_12 . CDS 496814 497315 . + 0 ID=Physo130700;Parent=Physo130700;rank=5 scaffold_12 . exon 496814 497315 . + . ID=Physo130700.5;Parent=Physo130700;constitutive=1;ensembl_phase=2;rank=5 scaffold_12 . repeat_region 498842 500250 . ? . description=dust scaffold_12 . biological_region 500622 500627 0.999 - . logic_name=eponine scaffold_12 . biological_region 500716 500719 0.999 - . logic_name=eponine scaffold_12 . repeat_region 500864 500871 . ? . description=dust scaffold_12 . biological_region 500872 500875 0.999 - . logic_name=eponine scaffold_12 . repeat_region 502178 502222 . ? . description=dust scaffold_12 . repeat_region 502418 502976 . ? . description=dust scaffold_12 . repeat_region 503017 503026 . ? . description=dust scaffold_12 . biological_region 503495 503496 0.999 - . logic_name=eponine scaffold_12 . repeat_region 505400 505449 . ? . description=dust scaffold_12 ensembl protein_coding_gene 497887 498423 . - . ID=Physo130701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120133;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 497887 498423 . - . ID=Physo130701;Parent=Physo130701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 497887 498423 . - 0 ID=Physo130701;Parent=Physo130701;rank=1 scaffold_12 . exon 497887 498423 . - . ID=Physo130701.1;Parent=Physo130701;constitutive=1;rank=1 scaffold_12 . repeat_region 510073 510134 . ? . description=trf scaffold_12 ensembl protein_coding_gene 513760 514020 . + . ID=Physo113075;biotype=protein_coding;external_name=estExt_Genewise1.C_120016;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 513760 514020 . + . ID=Physo113075;Parent=Physo113075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 513760 514020 . + . ID=Physo113075.1;Parent=Physo113075;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 513802 514020 . + 0 ID=Physo113075;Parent=Physo113075;rank=1 scaffold_12 ensembl protein_coding_gene 516949 517311 . + . ID=Physo130702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120134;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 516949 517311 . + . ID=Physo130702;Parent=Physo130702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 516949 517311 . + 0 ID=Physo130702;Parent=Physo130702;rank=1 scaffold_12 . exon 516949 517311 . + . ID=Physo130702.1;Parent=Physo130702;constitutive=1;rank=1 scaffold_12 . biological_region 517473 517474 0.999 - . logic_name=eponine scaffold_12 . repeat_region 518615 518623 . ? . description=dust scaffold_12 . repeat_region 523964 523988 . ? . description=dust scaffold_12 . biological_region 525649 525651 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 518554 519929 . - . ID=Physo130703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120135;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 518554 519929 . - . ID=Physo130703;Parent=Physo130703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 518554 518592 . - 0 ID=Physo130703;Parent=Physo130703;rank=3 scaffold_12 . exon 518554 518592 . - . ID=Physo130703.3;Parent=Physo130703;constitutive=1;rank=3 scaffold_12 . CDS 518616 519674 . - 0 ID=Physo130703;Parent=Physo130703;rank=2 scaffold_12 . exon 518616 519674 . - . ID=Physo130703.2;Parent=Physo130703;constitutive=1;rank=2 scaffold_12 . CDS 519894 519929 . - 0 ID=Physo130703;Parent=Physo130703;rank=1 scaffold_12 . exon 519894 519929 . - . ID=Physo130703.1;Parent=Physo130703;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 521059 522282 . + . ID=Physo130704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120136;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 521059 522282 . + . ID=Physo130704;Parent=Physo130704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 521059 521514 . + 0 ID=Physo130704;Parent=Physo130704;rank=1 scaffold_12 . exon 521059 521514 . + . ID=Physo130704.1;Parent=Physo130704;constitutive=1;rank=1 scaffold_12 . CDS 521680 522282 . + 0 ID=Physo130704;Parent=Physo130704;rank=2 scaffold_12 . exon 521680 522282 . + . ID=Physo130704.2;Parent=Physo130704;constitutive=1;rank=2 scaffold_12 . repeat_region 527505 527583 . ? . description=trf scaffold_12 . repeat_region 533150 533246 . ? . description=trf scaffold_12 . repeat_region 537947 537954 . ? . description=dust scaffold_12 . repeat_region 538561 538571 . ? . description=dust scaffold_12 . repeat_region 541307 541315 . ? . description=dust scaffold_12 ensembl protein_coding_gene 541683 542939 . - . ID=Physo130705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120137;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 541683 542939 . - . ID=Physo130705;Parent=Physo130705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 541683 542939 . - . ID=Physo130705.1;Parent=Physo130705;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 541822 542874 . - 0 ID=Physo130705;Parent=Physo130705;rank=1 scaffold_12 ensembl protein_coding_gene 546192 547101 . - . ID=Physo156202;biotype=protein_coding;external_name=C_scaffold_12000028;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 546192 547101 . - . ID=Physo156202;Parent=Physo156202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 546192 546260 . - 0 ID=Physo156202;Parent=Physo156202;rank=5 scaffold_12 . exon 546192 546260 . - . ID=Physo156202.5;Parent=Physo156202;constitutive=1;rank=5 scaffold_12 . CDS 546344 546518 . - 0 ID=Physo156202;Parent=Physo156202;rank=4 scaffold_12 . exon 546344 546518 . - . ID=Physo156202.4;Parent=Physo156202;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 546589 546656 . - 0 ID=Physo156202;Parent=Physo156202;rank=3 scaffold_12 . exon 546589 546656 . - . ID=Physo156202.3;Parent=Physo156202;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 546728 546920 . - 0 ID=Physo156202;Parent=Physo156202;rank=2 scaffold_12 . exon 546728 546920 . - . ID=Physo156202.2;Parent=Physo156202;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 546983 547101 . - 0 ID=Physo156202;Parent=Physo156202;rank=1 scaffold_12 . exon 546983 547101 . - . ID=Physo156202.1;Parent=Physo156202;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 547245 547808 . + . ID=Physo156203;biotype=protein_coding;external_name=C_scaffold_12000029;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 547245 547808 . + . ID=Physo156203;Parent=Physo156203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 547245 547517 . + 0 ID=Physo156203;Parent=Physo156203;rank=1 scaffold_12 . exon 547245 547517 . + . ID=Physo156203.1;Parent=Physo156203;constitutive=1;rank=1 scaffold_12 . CDS 547554 547808 . + 0 ID=Physo156203;Parent=Physo156203;rank=2 scaffold_12 . repeat_region 547401 547420 . ? . description=trf scaffold_12 . biological_region 549452 549456 0.999 - . logic_name=eponine scaffold_12 . biological_region 550018 550023 0.999 + . logic_name=eponine scaffold_12 . biological_region 550044 550047 0.999 + . logic_name=eponine scaffold_12 . biological_region 550118 550120 0.999 + . logic_name=eponine scaffold_12 . biological_region 550141 550142 0.999 + . logic_name=eponine scaffold_12 . biological_region 550243 550248 0.999 - . logic_name=eponine scaffold_12 . biological_region 550336 550337 0.999 - . logic_name=eponine scaffold_12 . biological_region 553090 553090 0.999 - . logic_name=eponine scaffold_12 . biological_region 556270 556274 0.999 + . logic_name=eponine scaffold_12 . biological_region 556360 556365 0.999 - . logic_name=eponine scaffold_12 . biological_region 556548 556550 0.999 - . logic_name=eponine scaffold_12 . biological_region 556902 556903 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 549191 550378 . - . ID=Physo108501;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120011;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 549191 550378 . - . ID=Physo108501;Parent=Physo108501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 549191 550378 . - . ID=Physo108501.1;Parent=Physo108501;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 . CDS 549275 550378 . - 0 ID=Physo108501;Parent=Physo108501;rank=1 scaffold_12 ensembl protein_coding_gene 548156 549009 . - . ID=Physo130708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120140;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 548156 549009 . - . ID=Physo130708;Parent=Physo130708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 548156 548266 . - 0 ID=Physo130708;Parent=Physo130708;rank=4 scaffold_12 . exon 548156 548266 . - . ID=Physo130708.4;Parent=Physo130708;constitutive=1;rank=4 scaffold_12 . CDS 548302 548485 . - 0 ID=Physo130708;Parent=Physo130708;rank=3 scaffold_12 . exon 548302 548485 . - . ID=Physo130708.3;Parent=Physo130708;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 548563 548779 . - 0 ID=Physo130708;Parent=Physo130708;rank=2 scaffold_12 . exon 548563 548779 . - . ID=Physo130708.2;Parent=Physo130708;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 548976 549009 . - 0 ID=Physo130708;Parent=Physo130708;rank=1 scaffold_12 . exon 548976 549009 . - . ID=Physo130708.1;Parent=Physo130708;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 550694 552283 . - . ID=Physo130710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120142;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 550694 552283 . - . ID=Physo130710;Parent=Physo130710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 550694 552050 . - 0 ID=Physo130710;Parent=Physo130710;rank=2 scaffold_12 . exon 550694 552050 . - . ID=Physo130710.2;Parent=Physo130710;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 552135 552283 . - 0 ID=Physo130710;Parent=Physo130710;rank=1 scaffold_12 . exon 552135 552283 . - . ID=Physo130710.1;Parent=Physo130710;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 552488 553279 . + . ID=Physo130711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120143;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 552488 553279 . + . ID=Physo130711;Parent=Physo130711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 552488 553198 . + 0 ID=Physo130711;Parent=Physo130711;rank=1 scaffold_12 . exon 552488 553279 . + . ID=Physo130711.1;Parent=Physo130711;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 556004 556411 . + . ID=Physo130712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120144;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 556004 556411 . + . ID=Physo130712;Parent=Physo130712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 556004 556411 . + 0 ID=Physo130712;Parent=Physo130712;rank=1 scaffold_12 . exon 556004 556411 . + . ID=Physo130712.1;Parent=Physo130712;constitutive=1;rank=1 scaffold_12 . exon 547554 547808 . + . ID=Physo156203.2;Parent=Physo156203;constitutive=1;rank=2 scaffold_12 . repeat_region 558078 560410 . - . description=GypsyPi-1c_I-int scaffold_12 . repeat_region 561312 561450 . ? . description=dust scaffold_12 . repeat_region 561451 561730 . ? . description=dust scaffold_12 . repeat_region 564163 564239 . ? . description=dust scaffold_12 ensembl protein_coding_gene 557858 561086 . - . ID=Physo130713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120145;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 557858 561086 . - . ID=Physo130713;Parent=Physo130713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 557858 558018 . - 0 ID=Physo130713;Parent=Physo130713;rank=5 scaffold_12 . exon 557858 558018 . - . ID=Physo130713.5;Parent=Physo130713;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 558045 558711 . - 0 ID=Physo130713;Parent=Physo130713;rank=4 scaffold_12 . exon 558045 558711 . - . ID=Physo130713.4;Parent=Physo130713;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_12 . CDS 558850 559442 . - 0 ID=Physo130713;Parent=Physo130713;rank=3 scaffold_12 . exon 558850 559442 . - . ID=Physo130713.3;Parent=Physo130713;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 559575 560529 . - 0 ID=Physo130713;Parent=Physo130713;rank=2 scaffold_12 . exon 559575 560529 . - . ID=Physo130713.2;Parent=Physo130713;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 560880 561086 . - 0 ID=Physo130713;Parent=Physo130713;rank=1 scaffold_12 . exon 560880 561086 . - . ID=Physo130713.1;Parent=Physo130713;constitutive=1;rank=1 scaffold_12 . repeat_region 567244 567322 . ? . description=trf scaffold_12 . biological_region 567530 567532 0.999 - . logic_name=eponine scaffold_12 . repeat_region 567667 567813 . + . description=SSU-rRNA_Tps scaffold_12 . biological_region 572614 572617 0.999 - . logic_name=eponine scaffold_12 . repeat_region 573772 573824 . ? . description=trf scaffold_12 . repeat_region 574147 574324 . ? . description=trf scaffold_12 . repeat_region 574402 574471 . ? . description=trf scaffold_12 . biological_region 574876 574880 0.999 + . logic_name=eponine scaffold_12 . biological_region 575036 575037 0.999 - . logic_name=eponine scaffold_12 . biological_region 575167 575168 0.999 - . logic_name=eponine scaffold_12 . repeat_region 575893 575940 . ? . description=trf scaffold_12 . repeat_region 575903 575940 . ? . description=trf scaffold_12 . biological_region 576819 576822 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 572239 572666 . + . ID=Physo130714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120146;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 572239 572666 . + . ID=Physo130714;Parent=Physo130714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 572239 572253 . + 0 ID=Physo130714;Parent=Physo130714;rank=1 scaffold_12 . exon 572239 572253 . + . ID=Physo130714.1;Parent=Physo130714;constitutive=1;rank=1 scaffold_12 . CDS 572346 572666 . + 0 ID=Physo130714;Parent=Physo130714;rank=2 scaffold_12 . exon 572346 572666 . + . ID=Physo130714.2;Parent=Physo130714;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 574000 576168 . + . ID=Physo130715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120147;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 574000 576168 . + . ID=Physo130715;Parent=Physo130715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 574000 576168 . + 0 ID=Physo130715;Parent=Physo130715;rank=1 scaffold_12 . exon 574000 576168 . + . ID=Physo130715.1;Parent=Physo130715;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 577001 578461 . + . ID=Physo130716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120148;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 577001 578461 . + . ID=Physo130716;Parent=Physo130716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 577001 578461 . + 0 ID=Physo130716;Parent=Physo130716;rank=1 scaffold_12 . exon 577001 578461 . + . ID=Physo130716.1;Parent=Physo130716;constitutive=1;rank=1 scaffold_12 . repeat_region 578970 578978 . ? . description=dust scaffold_12 . repeat_region 583097 583151 . ? . description=dust scaffold_12 . repeat_region 583401 583442 . ? . description=dust scaffold_12 . repeat_region 584428 584459 . ? . description=dust scaffold_12 ensembl protein_coding_gene 579796 582324 . + . ID=Physo130717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120149;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 579796 582324 . + . ID=Physo130717;Parent=Physo130717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 579796 580965 . + 0 ID=Physo130717;Parent=Physo130717;rank=1 scaffold_12 . exon 579796 580965 . + . ID=Physo130717.1;Parent=Physo130717;constitutive=1;rank=1 scaffold_12 . CDS 581196 581546 . + 0 ID=Physo130717;Parent=Physo130717;rank=2 scaffold_12 . exon 581196 581546 . + . ID=Physo130717.2;Parent=Physo130717;constitutive=1;rank=2 scaffold_12 . CDS 581611 582324 . + 0 ID=Physo130717;Parent=Physo130717;rank=3 scaffold_12 . exon 581611 582324 . + . ID=Physo130717.3;Parent=Physo130717;constitutive=1;rank=3 scaffold_12 ensembl protein_coding_gene 582435 583766 . - . ID=Physo130718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120150;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 582435 583766 . - . ID=Physo130718;Parent=Physo130718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 582435 583721 . - 0 ID=Physo130718;Parent=Physo130718;rank=1 scaffold_12 . exon 582435 583766 . - . ID=Physo130718.1;Parent=Physo130718;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . biological_region 590526 590531 0.999 + . logic_name=eponine scaffold_12 . biological_region 590637 590642 0.999 - . logic_name=eponine scaffold_12 . biological_region 590657 590660 0.999 - . logic_name=eponine scaffold_12 . biological_region 591290 591295 0.999 + . logic_name=eponine scaffold_12 . biological_region 591375 591375 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 591654 592268 . + . ID=Physo130719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120151;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 591654 592268 . + . ID=Physo130719;Parent=Physo130719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 591654 592268 . + 0 ID=Physo130719;Parent=Physo130719;rank=1 scaffold_12 . exon 591654 592268 . + . ID=Physo130719.1;Parent=Physo130719;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 600514 603825 . + . ID=Physo130720;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q6X0M3];external_name=estExt_fgenesh1_pg.C_120152;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 600514 603825 . + . ID=Physo130720;Parent=Physo130720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 600514 603825 . + 0 ID=Physo130720;Parent=Physo130720;rank=1 scaffold_12 . exon 600514 603825 . + . ID=Physo130720.1;Parent=Physo130720;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 603919 604992 . - . ID=Physo130721;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q6X0M5];external_name=estExt_fgenesh1_pg.C_120153;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 603919 604992 . - . ID=Physo130721;Parent=Physo130721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 603919 604992 . - 0 ID=Physo130721;Parent=Physo130721;rank=1 scaffold_12 . exon 603919 604992 . - . ID=Physo130721.1;Parent=Physo130721;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 605766 607032 . + . ID=Physo130722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120154;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 605766 607032 . + . ID=Physo130722;Parent=Physo130722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 605766 605979 . + . ID=Physo130722.1;Parent=Physo130722;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 605923 605979 . + 0 ID=Physo130722;Parent=Physo130722;rank=1 scaffold_12 . CDS 606013 606408 . + 0 ID=Physo130722;Parent=Physo130722;rank=2 scaffold_12 . exon 606013 606408 . + . ID=Physo130722.2;Parent=Physo130722;constitutive=1;rank=2 scaffold_12 . CDS 606476 606838 . + 0 ID=Physo130722;Parent=Physo130722;rank=3 scaffold_12 . exon 606476 607032 . + . ID=Physo130722.3;Parent=Physo130722;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_12 . repeat_region 609722 609730 . ? . description=dust scaffold_12 . repeat_region 610578 610594 . ? . description=dust scaffold_12 . repeat_region 611128 611159 . ? . description=trf scaffold_12 . repeat_region 611135 611155 . ? . description=dust scaffold_12 . biological_region 613734 613735 0.999 - . logic_name=eponine scaffold_12 . repeat_region 614414 614464 . ? . description=trf scaffold_12 . repeat_region 614419 614463 . ? . description=trf scaffold_12 . repeat_region 614419 614463 . ? . description=dust scaffold_12 . biological_region 614682 614687 0.999 - . logic_name=eponine scaffold_12 . repeat_region 616424 616465 . ? . description=trf scaffold_12 ensembl protein_coding_gene 610355 611911 . + . ID=Physo130723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120155;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 610355 611911 . + . ID=Physo130723;Parent=Physo130723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 610355 610548 . + 0 ID=Physo130723;Parent=Physo130723;rank=1 scaffold_12 . exon 610355 610548 . + . ID=Physo130723.1;Parent=Physo130723;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 610838 611046 . + 0 ID=Physo130723;Parent=Physo130723;rank=2 scaffold_12 . exon 610838 611046 . + . ID=Physo130723.2;Parent=Physo130723;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 611169 611812 . + 0 ID=Physo130723;Parent=Physo130723;rank=3 scaffold_12 . exon 611169 611911 . + . ID=Physo130723.3;Parent=Physo130723;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_12 ensembl protein_coding_gene 611955 614771 . - . ID=Physo130724;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q6X0M1];external_name=estExt_fgenesh1_pg.C_120156;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 611955 614771 . - . ID=Physo130724;Parent=Physo130724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 611955 614771 . - 0 ID=Physo130724;Parent=Physo130724;rank=1 scaffold_12 . exon 611955 614771 . - . ID=Physo130724.1;Parent=Physo130724;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 621337 621781 . + . ID=Physo130725;biotype=protein_coding;description=PsAvh171 PsAvr4/6Putative effector protein Avh171 [Source:UniProtKB/TrEMBL%3BAcc:A7L812];external_name=AVR4;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 621337 621781 . + . ID=Physo130725;Parent=Physo130725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 621337 621680 . + 0 ID=Physo130725;Parent=Physo130725;rank=1 scaffold_12 . exon 621337 621680 . + . ID=Physo130725.1;Parent=Physo130725;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 621718 621781 . + 0 ID=Physo130725;Parent=Physo130725;rank=2 scaffold_12 . exon 621718 621781 . + . ID=Physo130725.2;Parent=Physo130725;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . repeat_region 630390 630439 . ? . description=dust scaffold_12 . repeat_region 631908 631957 . ? . description=dust scaffold_12 . biological_region 634993 634997 0.999 + . logic_name=eponine scaffold_12 . repeat_region 635407 635456 . ? . description=dust scaffold_12 ensembl protein_coding_gene 627021 629489 . + . ID=Physo130726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120158;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 627021 629489 . + . ID=Physo130726;Parent=Physo130726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 627021 629489 . + 0 ID=Physo130726;Parent=Physo130726;rank=1 scaffold_12 . exon 627021 629489 . + . ID=Physo130726.1;Parent=Physo130726;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 632139 633059 . + . ID=Physo130727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120159;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 632139 633059 . + . ID=Physo130727;Parent=Physo130727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 632139 633059 . + 0 ID=Physo130727;Parent=Physo130727;rank=1 scaffold_12 . exon 632139 633059 . + . ID=Physo130727.1;Parent=Physo130727;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 635645 636565 . + . ID=Physo130728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120160;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 635645 636565 . + . ID=Physo130728;Parent=Physo130728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 635645 636565 . + 0 ID=Physo130728;Parent=Physo130728;rank=1 scaffold_12 . exon 635645 636565 . + . ID=Physo130728.1;Parent=Physo130728;constitutive=1;rank=1 scaffold_12 . repeat_region 639095 639398 . - . description=GypsyPi-1c_LTR scaffold_12 . repeat_region 639399 639721 . - . description=GypsyPi-1c_I-int scaffold_12 . repeat_region 640284 647026 . - . description=GypsyPi-1c_I-int scaffold_12 . repeat_region 644942 645042 . ? . description=trf scaffold_12 ensembl protein_coding_gene 639585 641786 . + . ID=Physo130729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120161;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 639585 641786 . + . ID=Physo130729;Parent=Physo130729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 639585 640742 . + 0 ID=Physo130729;Parent=Physo130729;rank=1 scaffold_12 . exon 639585 640742 . + . ID=Physo130729.1;Parent=Physo130729;constitutive=1;rank=1 scaffold_12 . CDS 640773 641786 . + 0 ID=Physo130729;Parent=Physo130729;rank=2 scaffold_12 . exon 640773 641786 . + . ID=Physo130729.2;Parent=Physo130729;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 642231 646939 . - . ID=Physo130730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120162;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 642231 646939 . - . ID=Physo130730;Parent=Physo130730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 642231 643125 . - 0 ID=Physo130730;Parent=Physo130730;rank=4 scaffold_12 . exon 642231 643125 . - . ID=Physo130730.4;Parent=Physo130730;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 643658 644428 . - 0 ID=Physo130730;Parent=Physo130730;rank=3 scaffold_12 . exon 643658 644428 . - . ID=Physo130730.3;Parent=Physo130730;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 644500 645849 . - 0 ID=Physo130730;Parent=Physo130730;rank=2 scaffold_12 . exon 644500 645849 . - . ID=Physo130730.2;Parent=Physo130730;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 645939 646939 . - 0 ID=Physo130730;Parent=Physo130730;rank=1 scaffold_12 . exon 645939 646939 . - . ID=Physo130730.1;Parent=Physo130730;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . biological_region 647754 647757 0.999 + . logic_name=eponine scaffold_12 . biological_region 649129 649130 0.999 + . logic_name=eponine scaffold_12 . biological_region 649203 649209 0.999 + . logic_name=eponine scaffold_12 . biological_region 649407 649410 0.999 - . logic_name=eponine scaffold_12 . biological_region 649419 649420 0.999 + . logic_name=eponine scaffold_12 . biological_region 649441 649446 0.999 - . logic_name=eponine scaffold_12 . biological_region 649514 649517 0.999 - . logic_name=eponine scaffold_12 . biological_region 650284 650288 0.999 - . logic_name=eponine scaffold_12 . biological_region 651459 651462 0.999 + . logic_name=eponine scaffold_12 . biological_region 651483 651488 0.999 + . logic_name=eponine scaffold_12 . biological_region 653299 653304 0.999 + . logic_name=eponine scaffold_12 . biological_region 656049 656055 0.999 - . logic_name=eponine scaffold_12 . biological_region 656258 656262 0.999 - . logic_name=eponine scaffold_12 . biological_region 656707 656709 0.999 + . logic_name=eponine scaffold_12 . biological_region 656742 656744 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 656476 657825 . + . ID=Physo108502;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120012;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 656476 657825 . + . ID=Physo108502;Parent=Physo108502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 656476 657621 . + 0 ID=Physo108502;Parent=Physo108502;rank=1 scaffold_12 . exon 656476 657621 . + . ID=Physo108502.1;Parent=Physo108502;constitutive=1;rank=1 scaffold_12 . CDS 657667 657825 . + 0 ID=Physo108502;Parent=Physo108502;rank=2 scaffold_12 ensembl protein_coding_gene 648631 648951 . - . ID=Physo130731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120163;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 648631 648951 . - . ID=Physo130731;Parent=Physo130731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 648631 648951 . - 0 ID=Physo130731;Parent=Physo130731;rank=1 scaffold_12 . exon 648631 648951 . - . ID=Physo130731.1;Parent=Physo130731;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 649192 650471 . + . ID=Physo130732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120164;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 649192 650471 . + . ID=Physo130732;Parent=Physo130732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 649192 649887 . + 0 ID=Physo130732;Parent=Physo130732;rank=1 scaffold_12 . exon 649192 649887 . + . ID=Physo130732.1;Parent=Physo130732;constitutive=1;rank=1 scaffold_12 . CDS 649962 650297 . + 0 ID=Physo130732;Parent=Physo130732;rank=2 scaffold_12 . exon 649962 650471 . + . ID=Physo130732.2;Parent=Physo130732;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_12 ensembl protein_coding_gene 650544 656282 . - . ID=Physo130733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120165;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 650544 656282 . - . ID=Physo130733;Parent=Physo130733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 650544 650970 . - 0 ID=Physo130733;Parent=Physo130733;rank=4 scaffold_12 . exon 650544 650970 . - . ID=Physo130733.4;Parent=Physo130733;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 651067 652049 . - 0 ID=Physo130733;Parent=Physo130733;rank=3 scaffold_12 . exon 651067 652049 . - . ID=Physo130733.3;Parent=Physo130733;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 652233 654397 . - 0 ID=Physo130733;Parent=Physo130733;rank=2 scaffold_12 . exon 652233 654397 . - . ID=Physo130733.2;Parent=Physo130733;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 654422 656282 . - 0 ID=Physo130733;Parent=Physo130733;rank=1 scaffold_12 . exon 654422 656282 . - . ID=Physo130733.1;Parent=Physo130733;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . repeat_region 665379 665386 . ? . description=dust scaffold_12 . exon 657667 657825 . + . ID=Physo108502.2;Parent=Physo108502;constitutive=1;rank=2 scaffold_12 ensembl protein_coding_gene 661756 662697 . + . ID=Physo130736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120168;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 661756 662697 . + . ID=Physo130736;Parent=Physo130736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 661756 662697 . + . ID=Physo130736.1;Parent=Physo130736;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 661758 662669 . + 0 ID=Physo130736;Parent=Physo130736;rank=1 scaffold_12 ensembl protein_coding_gene 663668 664498 . + . ID=Physo130737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120169;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 663668 664498 . + . ID=Physo130737;Parent=Physo130737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 663668 664498 . + 0 ID=Physo130737;Parent=Physo130737;rank=1 scaffold_12 . exon 663668 664498 . + . ID=Physo130737.1;Parent=Physo130737;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 657978 659500 . - . ID=Physo156211;biotype=protein_coding;external_name=C_scaffold_12000037;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 657978 659500 . - . ID=Physo156211;Parent=Physo156211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 657978 657993 . - 0 ID=Physo156211;Parent=Physo156211;rank=3 scaffold_12 . exon 657978 657993 . - . ID=Physo156211.3;Parent=Physo156211;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 658013 658436 . - 0 ID=Physo156211;Parent=Physo156211;rank=2 scaffold_12 . exon 658013 658436 . - . ID=Physo156211.2;Parent=Physo156211;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 658723 659500 . - 0 ID=Physo156211;Parent=Physo156211;rank=1 scaffold_12 . exon 658723 659500 . - . ID=Physo156211.1;Parent=Physo156211;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . biological_region 669865 669867 0.999 + . logic_name=eponine scaffold_12 . biological_region 669980 669985 0.999 - . logic_name=eponine scaffold_12 . biological_region 670106 670109 0.999 - . logic_name=eponine scaffold_12 . biological_region 670162 670166 0.999 + . logic_name=eponine scaffold_12 . biological_region 670251 670257 0.999 + . logic_name=eponine scaffold_12 . biological_region 670304 670307 0.999 + . logic_name=eponine scaffold_12 . biological_region 670310 670316 0.999 - . logic_name=eponine scaffold_12 . biological_region 670451 670454 0.999 + . logic_name=eponine scaffold_12 . biological_region 670631 670631 0.999 + . logic_name=eponine scaffold_12 . biological_region 670680 670681 0.999 + . logic_name=eponine scaffold_12 . biological_region 670789 670793 0.999 + . logic_name=eponine scaffold_12 . biological_region 670803 670806 0.999 + . logic_name=eponine scaffold_12 . biological_region 670822 670826 0.999 + . logic_name=eponine scaffold_12 . biological_region 670834 670835 0.999 - . logic_name=eponine scaffold_12 . biological_region 670872 670875 0.999 + . logic_name=eponine scaffold_12 . biological_region 670895 670898 0.999 - . logic_name=eponine scaffold_12 . biological_region 673248 673248 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 667484 670744 . - . ID=Physo130738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120170;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 667484 670744 . - . ID=Physo130738;Parent=Physo130738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 667484 667494 . - 0 ID=Physo130738;Parent=Physo130738;rank=6 scaffold_12 . exon 667484 667494 . - . ID=Physo130738.6;Parent=Physo130738;constitutive=1;ensembl_phase=1;rank=6 scaffold_12 . CDS 667741 668082 . - 0 ID=Physo130738;Parent=Physo130738;rank=5 scaffold_12 . exon 667741 668082 . - . ID=Physo130738.5;Parent=Physo130738;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 668208 668222 . - 0 ID=Physo130738;Parent=Physo130738;rank=4 scaffold_12 . exon 668208 668222 . - . ID=Physo130738.4;Parent=Physo130738;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 668555 669188 . - 0 ID=Physo130738;Parent=Physo130738;rank=3 scaffold_12 . exon 668555 669188 . - . ID=Physo130738.3;Parent=Physo130738;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_12 . CDS 669267 669528 . - 0 ID=Physo130738;Parent=Physo130738;rank=2 scaffold_12 . exon 669267 669528 . - . ID=Physo130738.2;Parent=Physo130738;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 669852 670672 . - 0 ID=Physo130738;Parent=Physo130738;rank=1 scaffold_12 . exon 669852 670744 . - . ID=Physo130738.1;Parent=Physo130738;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 672823 675003 . - . ID=Physo130739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120171;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 672823 675003 . - . ID=Physo130739;Parent=Physo130739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 672823 673494 . - 0 ID=Physo130739;Parent=Physo130739;rank=3 scaffold_12 . exon 672823 673494 . - . ID=Physo130739.3;Parent=Physo130739;constitutive=1;rank=3 scaffold_12 . CDS 674179 674640 . - 0 ID=Physo130739;Parent=Physo130739;rank=2 scaffold_12 . exon 674179 674640 . - . ID=Physo130739.2;Parent=Physo130739;constitutive=1;rank=2 scaffold_12 . CDS 674839 675003 . - 0 ID=Physo130739;Parent=Physo130739;rank=1 scaffold_12 . exon 674839 675003 . - . ID=Physo130739.1;Parent=Physo130739;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 675261 676639 . + . ID=Physo130740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120172;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 675261 676639 . + . ID=Physo130740;Parent=Physo130740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 675261 676261 . + 0 ID=Physo130740;Parent=Physo130740;rank=1 scaffold_12 . exon 675261 676261 . + . ID=Physo130740.1;Parent=Physo130740;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 676378 676639 . + 0 ID=Physo130740;Parent=Physo130740;rank=2 scaffold_12 . exon 676378 676639 . + . ID=Physo130740.2;Parent=Physo130740;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . repeat_region 678968 678978 . ? . description=dust scaffold_12 . repeat_region 685754 685762 . ? . description=dust scaffold_12 ensembl protein_coding_gene 677321 677812 . + . ID=Physo130741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120173;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 677321 677812 . + . ID=Physo130741;Parent=Physo130741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 677321 677812 . + 0 ID=Physo130741;Parent=Physo130741;rank=1 scaffold_12 . exon 677321 677812 . + . ID=Physo130741.1;Parent=Physo130741;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 679095 680279 . + . ID=Physo130742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120174;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 679095 680279 . + . ID=Physo130742;Parent=Physo130742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 679095 680279 . + 0 ID=Physo130742;Parent=Physo130742;rank=1 scaffold_12 . exon 679095 680279 . + . ID=Physo130742.1;Parent=Physo130742;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 680642 681180 . - . ID=Physo130743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120175;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 680642 681180 . - . ID=Physo130743;Parent=Physo130743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 680642 680878 . - . ID=Physo130743.2;Parent=Physo130743;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_12 . CDS 680644 680878 . - 0 ID=Physo130743;Parent=Physo130743;rank=2 scaffold_12 . CDS 680945 681144 . - 0 ID=Physo130743;Parent=Physo130743;rank=1 scaffold_12 . exon 680945 681180 . - . ID=Physo130743.1;Parent=Physo130743;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 682715 684520 . + . ID=Physo130744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120176;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 682715 684520 . + . ID=Physo130744;Parent=Physo130744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 682715 684520 . + 0 ID=Physo130744;Parent=Physo130744;rank=1 scaffold_12 . exon 682715 684520 . + . ID=Physo130744.1;Parent=Physo130744;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 684879 685415 . - . ID=Physo130745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120177;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 684879 685415 . - . ID=Physo130745;Parent=Physo130745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 684879 685415 . - 0 ID=Physo130745;Parent=Physo130745;rank=1 scaffold_12 . exon 684879 685415 . - . ID=Physo130745.1;Parent=Physo130745;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 686318 687246 . + . ID=Physo130746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120178;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 686318 687246 . + . ID=Physo130746;Parent=Physo130746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 686318 686545 . + 0 ID=Physo130746;Parent=Physo130746;rank=1 scaffold_12 . exon 686318 686545 . + . ID=Physo130746.1;Parent=Physo130746;constitutive=1;rank=1 scaffold_12 . CDS 686633 687083 . + 0 ID=Physo130746;Parent=Physo130746;rank=2 scaffold_12 . CDS 687224 687246 . + 0 ID=Physo130746;Parent=Physo130746;rank=3 scaffold_12 . repeat_region 687384 687422 . ? . description=trf scaffold_12 . biological_region 687634 687635 0.999 + . logic_name=eponine scaffold_12 . biological_region 689545 689550 0.999 + . logic_name=eponine scaffold_12 . biological_region 689795 689796 0.999 - . logic_name=eponine scaffold_12 . biological_region 690141 690145 0.999 + . logic_name=eponine scaffold_12 . biological_region 690703 690706 0.999 - . logic_name=eponine scaffold_12 . biological_region 695899 695903 0.999 - . logic_name=eponine scaffold_12 . exon 686633 687083 . + . ID=Physo130746.2;Parent=Physo130746;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . exon 687224 687246 . + . ID=Physo130746.3;Parent=Physo130746;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 ensembl protein_coding_gene 687357 691395 . - . ID=Physo130747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120179;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 687357 691395 . - . ID=Physo130747;Parent=Physo130747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 687357 690041 . - 0 ID=Physo130747;Parent=Physo130747;rank=2 scaffold_12 . exon 687357 690041 . - . ID=Physo130747.2;Parent=Physo130747;constitutive=1;rank=2 scaffold_12 . CDS 690394 691395 . - 0 ID=Physo130747;Parent=Physo130747;rank=1 scaffold_12 . exon 690394 691395 . - . ID=Physo130747.1;Parent=Physo130747;constitutive=1;rank=1 scaffold_12 . repeat_region 703132 703168 . ? . description=dust scaffold_12 ensembl protein_coding_gene 701003 703210 . - . ID=Physo108503;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120013;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 701003 703210 . - . ID=Physo108503;Parent=Physo108503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 701003 703210 . - . ID=Physo108503.1;Parent=Physo108503;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 701221 703179 . - 0 ID=Physo108503;Parent=Physo108503;rank=1 scaffold_12 ensembl protein_coding_gene 697711 699909 . - . ID=Physo130748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120180;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 697711 699909 . - . ID=Physo130748;Parent=Physo130748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 697711 697956 . - 0 ID=Physo130748;Parent=Physo130748;rank=9 scaffold_12 . exon 697711 697956 . - . ID=Physo130748.9;Parent=Physo130748;constitutive=1;rank=9 scaffold_12 . CDS 698030 698161 . - 0 ID=Physo130748;Parent=Physo130748;rank=8 scaffold_12 . exon 698030 698161 . - . ID=Physo130748.8;Parent=Physo130748;constitutive=1;rank=8 scaffold_12 . CDS 698500 698562 . - 0 ID=Physo130748;Parent=Physo130748;rank=7 scaffold_12 . exon 698500 698562 . - . ID=Physo130748.7;Parent=Physo130748;constitutive=1;rank=7 scaffold_12 . CDS 698633 698725 . - 0 ID=Physo130748;Parent=Physo130748;rank=6 scaffold_12 . exon 698633 698725 . - . ID=Physo130748.6;Parent=Physo130748;constitutive=1;rank=6 scaffold_12 . CDS 698797 698874 . - 0 ID=Physo130748;Parent=Physo130748;rank=5 scaffold_12 . exon 698797 698874 . - . ID=Physo130748.5;Parent=Physo130748;constitutive=1;rank=5 scaffold_12 . CDS 698951 699011 . - 0 ID=Physo130748;Parent=Physo130748;rank=4 scaffold_12 . exon 698951 699011 . - . ID=Physo130748.4;Parent=Physo130748;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 699076 699228 . - 0 ID=Physo130748;Parent=Physo130748;rank=3 scaffold_12 . exon 699076 699228 . - . ID=Physo130748.3;Parent=Physo130748;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_12 . CDS 699298 699711 . - 0 ID=Physo130748;Parent=Physo130748;rank=2 scaffold_12 . exon 699298 699711 . - . ID=Physo130748.2;Parent=Physo130748;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_12 . CDS 699794 699909 . - 0 ID=Physo130748;Parent=Physo130748;rank=1 scaffold_12 . exon 699794 699909 . - . ID=Physo130748.1;Parent=Physo130748;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 703794 706361 . + . ID=Physo130750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120182;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 703794 706361 . + . ID=Physo130750;Parent=Physo130750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 703794 704027 . + . ID=Physo130750.1;Parent=Physo130750;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 703848 704027 . + 0 ID=Physo130750;Parent=Physo130750;rank=1 scaffold_12 . CDS 704498 705084 . + 0 ID=Physo130750;Parent=Physo130750;rank=2 scaffold_12 . exon 704498 705084 . + . ID=Physo130750.2;Parent=Physo130750;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_12 . CDS 705163 706015 . + 0 ID=Physo130750;Parent=Physo130750;rank=3 scaffold_12 . exon 705163 706015 . + . ID=Physo130750.3;Parent=Physo130750;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 706065 706148 . + 0 ID=Physo130750;Parent=Physo130750;rank=4 scaffold_12 . exon 706065 706148 . + . ID=Physo130750.4;Parent=Physo130750;constitutive=1;rank=4 scaffold_12 . CDS 706223 706360 . + 0 ID=Physo130750;Parent=Physo130750;rank=5 scaffold_12 . exon 706223 706361 . + . ID=Physo130750.5;Parent=Physo130750;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_12 . repeat_region 706599 706634 . ? . description=trf scaffold_12 . biological_region 706955 706959 0.999 - . logic_name=eponine scaffold_12 . biological_region 707127 707130 0.999 - . logic_name=eponine scaffold_12 . biological_region 707255 707256 0.999 + . logic_name=eponine scaffold_12 . biological_region 707506 707519 0.999 - . logic_name=eponine scaffold_12 . biological_region 707707 707707 0.999 + . logic_name=eponine scaffold_12 . biological_region 707727 707728 0.999 - . logic_name=eponine scaffold_12 . biological_region 707780 707782 0.999 + . logic_name=eponine scaffold_12 . biological_region 707851 707853 0.999 + . logic_name=eponine scaffold_12 . biological_region 708252 708254 0.999 - . logic_name=eponine scaffold_12 . repeat_region 709938 709962 . ? . description=trf scaffold_12 ensembl protein_coding_gene 706600 707522 . - . ID=Physo130751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120183;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 706600 707522 . - . ID=Physo130751;Parent=Physo130751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 706600 707522 . - . ID=Physo130751.1;Parent=Physo130751;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 706856 707521 . - 0 ID=Physo130751;Parent=Physo130751;rank=1 scaffold_12 ensembl protein_coding_gene 707654 709090 . + . ID=Physo130752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120184;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 707654 709090 . + . ID=Physo130752;Parent=Physo130752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 707654 707988 . + 0 ID=Physo130752;Parent=Physo130752;rank=1 scaffold_12 . exon 707654 707988 . + . ID=Physo130752.1;Parent=Physo130752;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 708067 708217 . + 0 ID=Physo130752;Parent=Physo130752;rank=2 scaffold_12 . exon 708067 708217 . + . ID=Physo130752.2;Parent=Physo130752;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 708292 708882 . + 0 ID=Physo130752;Parent=Physo130752;rank=3 scaffold_12 . exon 708292 708882 . + . ID=Physo130752.3;Parent=Physo130752;constitutive=1;rank=3 scaffold_12 . CDS 708962 709090 . + 0 ID=Physo130752;Parent=Physo130752;rank=4 scaffold_12 . exon 708962 709090 . + . ID=Physo130752.4;Parent=Physo130752;constitutive=1;rank=4 scaffold_12 ensembl protein_coding_gene 709798 711674 . + . ID=Physo130753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120185;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 709798 711674 . + . ID=Physo130753;Parent=Physo130753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 709798 710323 . + 0 ID=Physo130753;Parent=Physo130753;rank=1 scaffold_12 . exon 709798 710323 . + . ID=Physo130753.1;Parent=Physo130753;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 710434 711040 . + 0 ID=Physo130753;Parent=Physo130753;rank=2 scaffold_12 . exon 710434 711040 . + . ID=Physo130753.2;Parent=Physo130753;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 711290 711674 . + 0 ID=Physo130753;Parent=Physo130753;rank=3 scaffold_12 . exon 711290 711674 . + . ID=Physo130753.3;Parent=Physo130753;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 ensembl protein_coding_gene 717836 718012 . + . ID=Physo113109;biotype=protein_coding;external_name=estExt_Genewise1.C_120050;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 717836 718012 . + . ID=Physo113109;Parent=Physo113109;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 717836 718012 . + . ID=Physo113109.1;Parent=Physo113109;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 717881 718012 . + 0 ID=Physo113109;Parent=Physo113109;rank=1 scaffold_12 . repeat_region 727833 727946 . ? . description=dust scaffold_12 ensembl tRNA_gene 735223 735292 . - . ID=EPrPSOG00000000060;biotype=tRNA;description=tRNA-Glu for anticodon CUC [Source:TRNASCAN_SE%3BAcc:tRNA-Glu];external_name=tRNA-Glu;logic_name=ncrna_eg scaffold_12 ensembl transcript 735223 735292 . - . ID=EPrPSOT00000000060;Parent=EPrPSOG00000000060;biotype=tRNA;logic_name=ncrna_eg scaffold_12 . exon 735223 735292 . - . ID=EPrPSOE00000000060;Parent=EPrPSOT00000000060;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 727621 730546 . + . ID=Physo130754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120186;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 727621 730546 . + . ID=Physo130754;Parent=Physo130754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 727621 728168 . + 0 ID=Physo130754;Parent=Physo130754;rank=1 scaffold_12 . exon 727621 728168 . + . ID=Physo130754.1;Parent=Physo130754;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 728261 728463 . + 0 ID=Physo130754;Parent=Physo130754;rank=2 scaffold_12 . exon 728261 728463 . + . ID=Physo130754.2;Parent=Physo130754;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 728711 728909 . + 0 ID=Physo130754;Parent=Physo130754;rank=3 scaffold_12 . exon 728711 728909 . + . ID=Physo130754.3;Parent=Physo130754;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_12 . CDS 728989 729659 . + 0 ID=Physo130754;Parent=Physo130754;rank=4 scaffold_12 . exon 728989 729659 . + . ID=Physo130754.4;Parent=Physo130754;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 729715 729961 . + 0 ID=Physo130754;Parent=Physo130754;rank=5 scaffold_12 . exon 729715 729961 . + . ID=Physo130754.5;Parent=Physo130754;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_12 . CDS 730054 730291 . + 0 ID=Physo130754;Parent=Physo130754;rank=6 scaffold_12 . exon 730054 730291 . + . ID=Physo130754.6;Parent=Physo130754;constitutive=1;ensembl_phase=2;rank=6 scaffold_12 . CDS 730340 730546 . + 0 ID=Physo130754;Parent=Physo130754;rank=7 scaffold_12 . exon 730340 730546 . + . ID=Physo130754.7;Parent=Physo130754;constitutive=1;rank=7 scaffold_12 . repeat_region 736735 736761 . ? . description=trf scaffold_12 . repeat_region 738024 738600 . + . description=GypsyPi-1c_I-int scaffold_12 . biological_region 738252 738257 0.999 - . logic_name=eponine scaffold_12 . biological_region 738271 738272 0.999 + . logic_name=eponine scaffold_12 . biological_region 738722 738726 0.999 + . logic_name=eponine scaffold_12 . biological_region 738748 738751 0.999 - . logic_name=eponine scaffold_12 . biological_region 739125 739128 0.999 - . logic_name=eponine scaffold_12 . repeat_region 739238 742180 . + . description=GypsyPi-1c_I-int scaffold_12 . biological_region 742413 742419 0.999 - . logic_name=eponine scaffold_12 . repeat_region 742501 742573 . + . description=GypsyPi-1c_I-int scaffold_12 . biological_region 742808 742813 0.999 - . logic_name=eponine scaffold_12 . biological_region 742862 742866 0.999 - . logic_name=eponine scaffold_12 . biological_region 742877 742880 0.999 - . logic_name=eponine scaffold_12 . biological_region 743507 743510 0.999 + . logic_name=eponine scaffold_12 . repeat_region 745901 745923 . ? . description=trf scaffold_12 . biological_region 746300 746301 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 737841 741806 . + . ID=Physo130755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120187;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 737841 741806 . + . ID=Physo130755;Parent=Physo130755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 737841 738012 . + 0 ID=Physo130755;Parent=Physo130755;rank=1 scaffold_12 . exon 737841 738012 . + . ID=Physo130755.1;Parent=Physo130755;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 738084 738438 . + 0 ID=Physo130755;Parent=Physo130755;rank=2 scaffold_12 . exon 738084 738438 . + . ID=Physo130755.2;Parent=Physo130755;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 738571 741203 . + 0 ID=Physo130755;Parent=Physo130755;rank=3 scaffold_12 . exon 738571 741203 . + . ID=Physo130755.3;Parent=Physo130755;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 741333 741773 . + 0 ID=Physo130755;Parent=Physo130755;rank=4 scaffold_12 . exon 741333 741773 . + . ID=Physo130755.4;Parent=Physo130755;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 741796 741806 . + 0 ID=Physo130755;Parent=Physo130755;rank=5 scaffold_12 . exon 741796 741806 . + . ID=Physo130755.5;Parent=Physo130755;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 ensembl protein_coding_gene 742161 743908 . - . ID=Physo130756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120188;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 742161 743908 . - . ID=Physo130756;Parent=Physo130756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 742161 742795 . - 0 ID=Physo130756;Parent=Physo130756;rank=3 scaffold_12 . exon 742161 742795 . - . ID=Physo130756.3;Parent=Physo130756;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 742997 743089 . - 0 ID=Physo130756;Parent=Physo130756;rank=2 scaffold_12 . exon 742997 743089 . - . ID=Physo130756.2;Parent=Physo130756;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 743233 743908 . - 0 ID=Physo130756;Parent=Physo130756;rank=1 scaffold_12 . exon 743233 743908 . - . ID=Physo130756.1;Parent=Physo130756;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . repeat_region 751799 751807 . ? . description=dust scaffold_12 ensembl protein_coding_gene 748212 749639 . - . ID=Physo108504;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120014;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 748212 749639 . - . ID=Physo108504;Parent=Physo108504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 748212 749639 . - 0 ID=Physo108504;Parent=Physo108504;rank=1 scaffold_12 . exon 748212 749639 . - . ID=Physo108504.1;Parent=Physo108504;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 750154 751587 . - . ID=Physo108505;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120015;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 750154 751587 . - . ID=Physo108505;Parent=Physo108505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 750154 751587 . - 0 ID=Physo108505;Parent=Physo108505;rank=1 scaffold_12 . exon 750154 751587 . - . ID=Physo108505.1;Parent=Physo108505;constitutive=1;rank=1 scaffold_12 . biological_region 758316 758319 0.999 + . logic_name=eponine scaffold_12 . biological_region 758395 758399 0.999 - . logic_name=eponine scaffold_12 . repeat_region 758708 758824 . ? . description=trf scaffold_12 . repeat_region 758710 758821 . ? . description=trf scaffold_12 . biological_region 763696 763698 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 763081 763950 . - . ID=Physo113120;biotype=protein_coding;external_name=estExt_Genewise1.C_120061;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 763081 763950 . - . ID=Physo113120;Parent=Physo113120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 763081 763298 . - . ID=Physo113120.4;Parent=Physo113120;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_12 . CDS 763206 763298 . - 0 ID=Physo113120;Parent=Physo113120;rank=4 scaffold_12 . CDS 763383 763450 . - 0 ID=Physo113120;Parent=Physo113120;rank=3 scaffold_12 . exon 763383 763450 . - . ID=Physo113120.3;Parent=Physo113120;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 763540 763762 . - 0 ID=Physo113120;Parent=Physo113120;rank=2 scaffold_12 . exon 763540 763762 . - . ID=Physo113120.2;Parent=Physo113120;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 763840 763950 . - 0 ID=Physo113120;Parent=Physo113120;rank=1 scaffold_12 . exon 763840 763950 . - . ID=Physo113120.1;Parent=Physo113120;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 758893 760363 . - . ID=Physo130759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120191;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 758893 760363 . - . ID=Physo130759;Parent=Physo130759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 758893 759036 . - 0 ID=Physo130759;Parent=Physo130759;rank=4 scaffold_12 . exon 758893 759036 . - . ID=Physo130759.4;Parent=Physo130759;constitutive=1;rank=4 scaffold_12 . CDS 759202 759225 . - 0 ID=Physo130759;Parent=Physo130759;rank=3 scaffold_12 . exon 759202 759225 . - . ID=Physo130759.3;Parent=Physo130759;constitutive=1;rank=3 scaffold_12 . CDS 759266 759516 . - 0 ID=Physo130759;Parent=Physo130759;rank=2 scaffold_12 . exon 759266 759516 . - . ID=Physo130759.2;Parent=Physo130759;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 759601 760363 . - 0 ID=Physo130759;Parent=Physo130759;rank=1 scaffold_12 . exon 759601 760363 . - . ID=Physo130759.1;Parent=Physo130759;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 764314 767404 . + . ID=Physo130761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120193;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 764314 767404 . + . ID=Physo130761;Parent=Physo130761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 764314 766036 . + 0 ID=Physo130761;Parent=Physo130761;rank=1 scaffold_12 . exon 764314 766036 . + . ID=Physo130761.1;Parent=Physo130761;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 766209 766360 . + 0 ID=Physo130761;Parent=Physo130761;rank=2 scaffold_12 . exon 766209 766360 . + . ID=Physo130761.2;Parent=Physo130761;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 766463 766623 . + 0 ID=Physo130761;Parent=Physo130761;rank=3 scaffold_12 . CDS 766698 766758 . + 0 ID=Physo130761;Parent=Physo130761;rank=4 scaffold_12 . CDS 766827 767156 . + 0 ID=Physo130761;Parent=Physo130761;rank=5 scaffold_12 . repeat_region 773701 773712 . ? . description=dust scaffold_12 ensembl protein_coding_gene 769095 770075 . + . ID=Physo108506;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120016;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 769095 770075 . + . ID=Physo108506;Parent=Physo108506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 769095 770075 . + 0 ID=Physo108506;Parent=Physo108506;rank=1 scaffold_12 . exon 769095 770075 . + . ID=Physo108506.1;Parent=Physo108506;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 771318 772781 . - . ID=Physo108507;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120017;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 771318 772781 . - . ID=Physo108507;Parent=Physo108507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 771318 772781 . - 0 ID=Physo108507;Parent=Physo108507;rank=1 scaffold_12 . exon 771318 772781 . - . ID=Physo108507.1;Parent=Physo108507;constitutive=1;rank=1 scaffold_12 . exon 766463 766623 . + . ID=Physo130761.3;Parent=Physo130761;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . exon 766698 766758 . + . ID=Physo130761.4;Parent=Physo130761;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . exon 766827 767404 . + . ID=Physo130761.5;Parent=Physo130761;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_12 ensembl protein_coding_gene 767394 768887 . - . ID=Physo130762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120194;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 767394 768887 . - . ID=Physo130762;Parent=Physo130762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 767394 768836 . - 0 ID=Physo130762;Parent=Physo130762;rank=1 scaffold_12 . exon 767394 768887 . - . ID=Physo130762.1;Parent=Physo130762;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 770266 771150 . - . ID=Physo130764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120196;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 770266 771150 . - . ID=Physo130764;Parent=Physo130764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 770266 771150 . - 0 ID=Physo130764;Parent=Physo130764;rank=1 scaffold_12 . exon 770266 771150 . - . ID=Physo130764.1;Parent=Physo130764;constitutive=1;rank=1 scaffold_12 . biological_region 778539 778540 0.999 + . logic_name=eponine scaffold_12 . repeat_region 781135 781178 . ? . description=trf scaffold_12 . biological_region 783491 783497 0.999 - . logic_name=eponine scaffold_12 . biological_region 783710 783710 0.999 + . logic_name=eponine scaffold_12 . repeat_region 783885 783926 . ? . description=trf scaffold_12 . biological_region 783944 783945 0.999 - . logic_name=eponine scaffold_12 . biological_region 784836 784839 0.999 + . logic_name=eponine scaffold_12 . biological_region 785205 785206 0.999 - . logic_name=eponine scaffold_12 . biological_region 785226 785231 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 777606 778643 . - . ID=Physo130766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120198;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 777606 778643 . - . ID=Physo130766;Parent=Physo130766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 777606 778220 . - 0 ID=Physo130766;Parent=Physo130766;rank=1 scaffold_12 . exon 777606 778643 . - . ID=Physo130766.1;Parent=Physo130766;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 ensembl protein_coding_gene 782511 783437 . - . ID=Physo130768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120200;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 782511 783437 . - . ID=Physo130768;Parent=Physo130768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 782511 783437 . - 0 ID=Physo130768;Parent=Physo130768;rank=1 scaffold_12 . exon 782511 783437 . - . ID=Physo130768.1;Parent=Physo130768;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 783664 783966 . + . ID=Physo130769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120201;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 783664 783966 . + . ID=Physo130769;Parent=Physo130769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 783664 783966 . + 0 ID=Physo130769;Parent=Physo130769;rank=1 scaffold_12 . exon 783664 783966 . + . ID=Physo130769.1;Parent=Physo130769;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 784101 784655 . - . ID=Physo130770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120202;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 784101 784655 . - . ID=Physo130770;Parent=Physo130770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 784101 784655 . - 0 ID=Physo130770;Parent=Physo130770;rank=1 scaffold_12 . exon 784101 784655 . - . ID=Physo130770.1;Parent=Physo130770;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 785573 789751 . + . ID=Physo130771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120203;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 785573 789751 . + . ID=Physo130771;Parent=Physo130771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 785573 789751 . + 0 ID=Physo130771;Parent=Physo130771;rank=1 scaffold_12 . exon 785573 789751 . + . ID=Physo130771.1;Parent=Physo130771;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 780188 780658 . + . ID=Physo156216;biotype=protein_coding;external_name=C_scaffold_12000042;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 780188 780658 . + . ID=Physo156216;Parent=Physo156216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 780188 780472 . + 0 ID=Physo156216;Parent=Physo156216;rank=1 scaffold_12 . exon 780188 780472 . + . ID=Physo156216.1;Parent=Physo156216;constitutive=1;rank=1 scaffold_12 . CDS 780548 780658 . + 0 ID=Physo156216;Parent=Physo156216;rank=2 scaffold_12 . exon 780548 780658 . + . ID=Physo156216.2;Parent=Physo156216;constitutive=1;rank=2 scaffold_12 . repeat_region 790115 790276 . + . description=(TCG)n scaffold_12 . repeat_region 791697 791760 . ? . description=dust scaffold_12 ensembl protein_coding_gene 795216 796527 . - . ID=Physo108508;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_120018;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 795216 796527 . - . ID=Physo108508;Parent=Physo108508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 795216 796527 . - . ID=Physo108508.1;Parent=Physo108508;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 . CDS 795238 796527 . - 0 ID=Physo108508;Parent=Physo108508;rank=1 scaffold_12 ensembl protein_coding_gene 789850 792873 . - . ID=Physo130772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120204;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 789850 792873 . - . ID=Physo130772;Parent=Physo130772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 789850 792873 . - . ID=Physo130772.1;Parent=Physo130772;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 . CDS 789919 792873 . - 0 ID=Physo130772;Parent=Physo130772;rank=1 scaffold_12 ensembl protein_coding_gene 793024 793986 . + . ID=Physo130773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120205;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 793024 793986 . + . ID=Physo130773;Parent=Physo130773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 793024 793986 . + . ID=Physo130773.1;Parent=Physo130773;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 793042 793986 . + 0 ID=Physo130773;Parent=Physo130773;rank=1 scaffold_12 ensembl protein_coding_gene 794208 795082 . + . ID=Physo130774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120206;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 794208 795082 . + . ID=Physo130774;Parent=Physo130774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 794208 794496 . + 0 ID=Physo130774;Parent=Physo130774;rank=1 scaffold_12 . exon 794208 794496 . + . ID=Physo130774.1;Parent=Physo130774;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 794526 795082 . + 0 ID=Physo130774;Parent=Physo130774;rank=2 scaffold_12 . exon 794526 795082 . + . ID=Physo130774.2;Parent=Physo130774;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . biological_region 796181 796181 0.999 + . logic_name=eponine scaffold_12 . biological_region 801597 801600 0.999 - . logic_name=eponine scaffold_12 . biological_region 801610 801611 0.999 + . logic_name=eponine scaffold_12 . biological_region 801653 801662 0.999 + . logic_name=eponine scaffold_12 . biological_region 801830 801833 0.999 - . logic_name=eponine scaffold_12 . biological_region 803871 803875 0.999 + . logic_name=eponine scaffold_12 . biological_region 804109 804111 0.999 + . logic_name=eponine scaffold_12 . biological_region 804125 804131 0.999 - . logic_name=eponine scaffold_12 . biological_region 804147 804149 0.999 - . logic_name=eponine scaffold_12 . biological_region 804202 804206 0.999 + . logic_name=eponine scaffold_12 . biological_region 804241 804241 0.999 - . logic_name=eponine scaffold_12 . biological_region 804737 804742 0.999 + . logic_name=eponine scaffold_12 . biological_region 804792 804797 0.999 + . logic_name=eponine scaffold_12 . biological_region 804830 804833 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 803414 804409 . + . ID=Physo113137;biotype=protein_coding;external_name=estExt_Genewise1.C_120078;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 803414 804409 . + . ID=Physo113137;Parent=Physo113137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 803414 804409 . + . ID=Physo113137.1;Parent=Physo113137;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 803444 804409 . + 0 ID=Physo113137;Parent=Physo113137;rank=1 scaffold_12 ensembl protein_coding_gene 799354 802959 . - . ID=Physo156217;biotype=protein_coding;external_name=C_scaffold_12000043;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 799354 802959 . - . ID=Physo156217;Parent=Physo156217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 799354 799380 . - 0 ID=Physo156217;Parent=Physo156217;rank=7 scaffold_12 . exon 799354 799380 . - . ID=Physo156217.7;Parent=Physo156217;constitutive=1;rank=7 scaffold_12 . CDS 799430 799606 . - 0 ID=Physo156217;Parent=Physo156217;rank=6 scaffold_12 . exon 799430 799606 . - . ID=Physo156217.6;Parent=Physo156217;constitutive=1;rank=6 scaffold_12 . CDS 800000 800437 . - 0 ID=Physo156217;Parent=Physo156217;rank=5 scaffold_12 . exon 800000 800437 . - . ID=Physo156217.5;Parent=Physo156217;constitutive=1;rank=5 scaffold_12 . CDS 800619 800965 . - 0 ID=Physo156217;Parent=Physo156217;rank=4 scaffold_12 . exon 800619 800965 . - . ID=Physo156217.4;Parent=Physo156217;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 801020 801833 . - 0 ID=Physo156217;Parent=Physo156217;rank=3 scaffold_12 . exon 801020 801833 . - . ID=Physo156217.3;Parent=Physo156217;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_12 . CDS 802039 802468 . - 0 ID=Physo156217;Parent=Physo156217;rank=2 scaffold_12 . exon 802039 802468 . - . ID=Physo156217.2;Parent=Physo156217;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 802523 802959 . - 0 ID=Physo156217;Parent=Physo156217;rank=1 scaffold_12 . exon 802523 802959 . - . ID=Physo156217.1;Parent=Physo156217;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 804794 805474 . - . ID=Physo156219;biotype=protein_coding;external_name=C_scaffold_12000045;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 804794 805474 . - . ID=Physo156219;Parent=Physo156219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 804794 805474 . - 0 ID=Physo156219;Parent=Physo156219;rank=1 scaffold_12 . exon 804794 805474 . - . ID=Physo156219.1;Parent=Physo156219;constitutive=1;rank=1 scaffold_12 . repeat_region 809362 809397 . ? . description=trf scaffold_12 ensembl protein_coding_gene 811672 812221 . - . ID=Physo130781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120213;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 811672 812221 . - . ID=Physo130781;Parent=Physo130781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 811672 811718 . - 0 ID=Physo130781;Parent=Physo130781;rank=2 scaffold_12 . exon 811672 811718 . - . ID=Physo130781.2;Parent=Physo130781;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 811762 812221 . - 0 ID=Physo130781;Parent=Physo130781;rank=1 scaffold_12 . exon 811762 812221 . - . ID=Physo130781.1;Parent=Physo130781;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 ensembl protein_coding_gene 812437 814302 . + . ID=Physo130782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120214;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 812437 814302 . + . ID=Physo130782;Parent=Physo130782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 812437 814302 . + 0 ID=Physo130782;Parent=Physo130782;rank=1 scaffold_12 . exon 812437 814302 . + . ID=Physo130782.1;Parent=Physo130782;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 815932 817245 . + . ID=Physo130783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120215;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 815932 817245 . + . ID=Physo130783;Parent=Physo130783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 815932 817245 . + 0 ID=Physo130783;Parent=Physo130783;rank=1 scaffold_12 . exon 815932 817245 . + . ID=Physo130783.1;Parent=Physo130783;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 806714 808112 . + . ID=Physo156220;biotype=protein_coding;external_name=C_scaffold_12000046;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 806714 808112 . + . ID=Physo156220;Parent=Physo156220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 806714 806938 . + 0 ID=Physo156220;Parent=Physo156220;rank=1 scaffold_12 . exon 806714 806938 . + . ID=Physo156220.1;Parent=Physo156220;constitutive=1;rank=1 scaffold_12 . CDS 806963 807196 . + 0 ID=Physo156220;Parent=Physo156220;rank=2 scaffold_12 . exon 806963 807196 . + . ID=Physo156220.2;Parent=Physo156220;constitutive=1;rank=2 scaffold_12 . CDS 807304 807705 . + 0 ID=Physo156220;Parent=Physo156220;rank=3 scaffold_12 . exon 807304 807705 . + . ID=Physo156220.3;Parent=Physo156220;constitutive=1;rank=3 scaffold_12 . CDS 807945 808112 . + 0 ID=Physo156220;Parent=Physo156220;rank=4 scaffold_12 . exon 807945 808112 . + . ID=Physo156220.4;Parent=Physo156220;constitutive=1;rank=4 scaffold_12 ensembl protein_coding_gene 808464 809533 . - . ID=Physo156221;biotype=protein_coding;external_name=C_scaffold_12000047;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 808464 809533 . - . ID=Physo156221;Parent=Physo156221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 808464 808493 . - 0 ID=Physo156221;Parent=Physo156221;rank=3 scaffold_12 . exon 808464 808493 . - . ID=Physo156221.3;Parent=Physo156221;constitutive=1;rank=3 scaffold_12 . CDS 808730 809318 . - 0 ID=Physo156221;Parent=Physo156221;rank=2 scaffold_12 . exon 808730 809318 . - . ID=Physo156221.2;Parent=Physo156221;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 809349 809533 . - 0 ID=Physo156221;Parent=Physo156221;rank=1 scaffold_12 . exon 809349 809533 . - . ID=Physo156221.1;Parent=Physo156221;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . biological_region 817098 817099 0.999 - . logic_name=eponine scaffold_12 . biological_region 817117 817120 0.999 - . logic_name=eponine scaffold_12 . biological_region 819610 819613 0.999 - . logic_name=eponine scaffold_12 . biological_region 820781 820782 0.999 - . logic_name=eponine scaffold_12 . biological_region 824553 824559 0.999 - . logic_name=eponine scaffold_12 . biological_region 825337 825341 0.999 + . logic_name=eponine scaffold_12 . repeat_region 825486 825501 . ? . description=dust scaffold_12 . biological_region 825537 825541 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 817438 819009 . - . ID=Physo130784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120216;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 817438 819009 . - . ID=Physo130784;Parent=Physo130784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 817438 819009 . - . ID=Physo130784.1;Parent=Physo130784;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_12 . CDS 817585 819009 . - 0 ID=Physo130784;Parent=Physo130784;rank=1 scaffold_12 ensembl protein_coding_gene 819208 821088 . + . ID=Physo130785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120217;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 819208 821088 . + . ID=Physo130785;Parent=Physo130785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 819208 821088 . + 0 ID=Physo130785;Parent=Physo130785;rank=1 scaffold_12 . exon 819208 821088 . + . ID=Physo130785.1;Parent=Physo130785;constitutive=1;rank=1 scaffold_12 . repeat_region 831084 833411 . - . description=GypsyPi-1c_I-int scaffold_12 ensembl protein_coding_gene 828748 837024 . - . ID=Physo130786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120218;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 828748 837024 . - . ID=Physo130786;Parent=Physo130786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 828748 829373 . - 0 ID=Physo130786;Parent=Physo130786;rank=12 scaffold_12 . exon 828748 829373 . - . ID=Physo130786.12;Parent=Physo130786;constitutive=1;ensembl_phase=1;rank=12 scaffold_12 . CDS 829634 829775 . - 0 ID=Physo130786;Parent=Physo130786;rank=11 scaffold_12 . exon 829634 829775 . - . ID=Physo130786.11;Parent=Physo130786;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_12 . CDS 829816 829954 . - 0 ID=Physo130786;Parent=Physo130786;rank=10 scaffold_12 . exon 829816 829954 . - . ID=Physo130786.10;Parent=Physo130786;constitutive=1;ensembl_phase=2;rank=10 scaffold_12 . CDS 829975 830657 . - 0 ID=Physo130786;Parent=Physo130786;rank=9 scaffold_12 . exon 829975 830657 . - . ID=Physo130786.9;Parent=Physo130786;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_12 . CDS 830978 831202 . - 0 ID=Physo130786;Parent=Physo130786;rank=8 scaffold_12 . exon 830978 831202 . - . ID=Physo130786.8;Parent=Physo130786;constitutive=1;rank=8 scaffold_12 . CDS 831356 832466 . - 0 ID=Physo130786;Parent=Physo130786;rank=7 scaffold_12 . exon 831356 832466 . - . ID=Physo130786.7;Parent=Physo130786;constitutive=1;ensembl_phase=2;rank=7 scaffold_12 . CDS 832510 833291 . - 0 ID=Physo130786;Parent=Physo130786;rank=6 scaffold_12 . exon 832510 833291 . - . ID=Physo130786.6;Parent=Physo130786;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_12 . CDS 833319 833896 . - 0 ID=Physo130786;Parent=Physo130786;rank=5 scaffold_12 . exon 833319 833896 . - . ID=Physo130786.5;Parent=Physo130786;constitutive=1;ensembl_phase=1;rank=5 scaffold_12 . CDS 833962 834707 . - 0 ID=Physo130786;Parent=Physo130786;rank=4 scaffold_12 . exon 833962 834707 . - . ID=Physo130786.4;Parent=Physo130786;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_12 . CDS 834845 835929 . - 0 ID=Physo130786;Parent=Physo130786;rank=3 scaffold_12 . exon 834845 835929 . - . ID=Physo130786.3;Parent=Physo130786;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . CDS 836078 836669 . - 0 ID=Physo130786;Parent=Physo130786;rank=2 scaffold_12 . CDS 836933 837024 . - 0 ID=Physo130786;Parent=Physo130786;rank=1 scaffold_12 . repeat_region 843449 843457 . ? . description=dust scaffold_12 . biological_region 843678 843681 0.999 + . logic_name=eponine scaffold_12 . repeat_region 844659 844667 . ? . description=dust scaffold_12 . exon 836078 836669 . - . ID=Physo130786.2;Parent=Physo130786;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . exon 836933 837024 . - . ID=Physo130786.1;Parent=Physo130786;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 837263 839219 . + . ID=Physo130787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120219;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 837263 839219 . + . ID=Physo130787;Parent=Physo130787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 837263 837927 . + 0 ID=Physo130787;Parent=Physo130787;rank=1 scaffold_12 . exon 837263 837927 . + . ID=Physo130787.1;Parent=Physo130787;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 838146 838326 . + 0 ID=Physo130787;Parent=Physo130787;rank=2 scaffold_12 . exon 838146 838326 . + . ID=Physo130787.2;Parent=Physo130787;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 838362 839219 . + 0 ID=Physo130787;Parent=Physo130787;rank=3 scaffold_12 . exon 838362 839219 . + . ID=Physo130787.3;Parent=Physo130787;constitutive=1;rank=3 scaffold_12 ensembl protein_coding_gene 840389 841387 . + . ID=Physo130788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120220;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 840389 841387 . + . ID=Physo130788;Parent=Physo130788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 840389 841387 . + 0 ID=Physo130788;Parent=Physo130788;rank=1 scaffold_12 . exon 840389 841387 . + . ID=Physo130788.1;Parent=Physo130788;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 843693 845205 . + . ID=Physo130789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120221;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 843693 845205 . + . ID=Physo130789;Parent=Physo130789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 843693 844637 . + 0 ID=Physo130789;Parent=Physo130789;rank=1 scaffold_12 . exon 843693 844637 . + . ID=Physo130789.1;Parent=Physo130789;constitutive=1;rank=1 scaffold_12 . CDS 844708 845205 . + 0 ID=Physo130789;Parent=Physo130789;rank=2 scaffold_12 . exon 844708 845205 . + . ID=Physo130789.2;Parent=Physo130789;constitutive=1;rank=2 scaffold_12 . repeat_region 847962 848337 . ? . description=trf scaffold_12 ensembl protein_coding_gene 851560 856956 . + . ID=Physo130790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120222;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 851560 856956 . + . ID=Physo130790;Parent=Physo130790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 851560 852997 . + 0 ID=Physo130790;Parent=Physo130790;rank=1 scaffold_12 . exon 851560 852997 . + . ID=Physo130790.1;Parent=Physo130790;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 853037 853807 . + 0 ID=Physo130790;Parent=Physo130790;rank=2 scaffold_12 . exon 853037 853807 . + . ID=Physo130790.2;Parent=Physo130790;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_12 . CDS 853958 854825 . + 0 ID=Physo130790;Parent=Physo130790;rank=3 scaffold_12 . exon 853958 854825 . + . ID=Physo130790.3;Parent=Physo130790;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_12 . CDS 855066 856956 . + 0 ID=Physo130790;Parent=Physo130790;rank=4 scaffold_12 . exon 855066 856956 . + . ID=Physo130790.4;Parent=Physo130790;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . biological_region 856599 856602 0.999 + . logic_name=eponine scaffold_12 . biological_region 856615 856617 0.999 + . logic_name=eponine scaffold_12 . biological_region 856677 856680 0.999 + . logic_name=eponine scaffold_12 . biological_region 857509 857511 0.999 - . logic_name=eponine scaffold_12 . biological_region 859303 859305 0.999 + . logic_name=eponine scaffold_12 . biological_region 859382 859383 0.999 + . logic_name=eponine scaffold_12 . biological_region 859520 859522 0.999 - . logic_name=eponine scaffold_12 . repeat_region 862616 862626 . ? . description=dust scaffold_12 . repeat_region 862782 862792 . ? . description=dust scaffold_12 . biological_region 863998 864002 0.999 + . logic_name=eponine scaffold_12 . biological_region 864022 864024 0.999 + . logic_name=eponine scaffold_12 . biological_region 865002 865007 0.999 + . logic_name=eponine scaffold_12 . biological_region 865102 865104 0.999 - . logic_name=eponine scaffold_12 . biological_region 865307 865310 0.999 + . logic_name=eponine scaffold_12 . biological_region 865661 865664 0.999 + . logic_name=eponine scaffold_12 ensembl protein_coding_gene 857423 859642 . + . ID=Physo130791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120223;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 857423 859642 . + . ID=Physo130791;Parent=Physo130791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 857423 859642 . + 0 ID=Physo130791;Parent=Physo130791;rank=1 scaffold_12 . exon 857423 859642 . + . ID=Physo130791.1;Parent=Physo130791;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 859946 861886 . + . ID=Physo130792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120224;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 859946 861886 . + . ID=Physo130792;Parent=Physo130792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 859946 861886 . + 0 ID=Physo130792;Parent=Physo130792;rank=1 scaffold_12 . exon 859946 861886 . + . ID=Physo130792.1;Parent=Physo130792;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 864662 865774 . - . ID=Physo130793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120225;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 864662 865774 . - . ID=Physo130793;Parent=Physo130793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 864662 865774 . - 0 ID=Physo130793;Parent=Physo130793;rank=1 scaffold_12 . exon 864662 865774 . - . ID=Physo130793.1;Parent=Physo130793;constitutive=1;rank=1 scaffold_12 . repeat_region 865732 865751 . ? . description=trf scaffold_12 . repeat_region 869154 869195 . ? . description=trf scaffold_12 . repeat_region 870338 870383 . ? . description=trf scaffold_12 ensembl protein_coding_gene 866953 869553 . - . ID=Physo130794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120226;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 866953 869553 . - . ID=Physo130794;Parent=Physo130794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 866953 869553 . - 0 ID=Physo130794;Parent=Physo130794;rank=1 scaffold_12 . exon 866953 869553 . - . ID=Physo130794.1;Parent=Physo130794;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 870192 871475 . - . ID=Physo130795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120227;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 870192 871475 . - . ID=Physo130795;Parent=Physo130795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 870192 871475 . - 0 ID=Physo130795;Parent=Physo130795;rank=1 scaffold_12 . exon 870192 871475 . - . ID=Physo130795.1;Parent=Physo130795;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 871703 872974 . - . ID=Physo130796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120228;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 871703 872974 . - . ID=Physo130796;Parent=Physo130796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 871703 872974 . - 0 ID=Physo130796;Parent=Physo130796;rank=1 scaffold_12 . exon 871703 872974 . - . ID=Physo130796.1;Parent=Physo130796;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 873749 876872 . - . ID=Physo130797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120229;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 873749 876872 . - . ID=Physo130797;Parent=Physo130797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 873749 873777 . - 0 ID=Physo130797;Parent=Physo130797;rank=3 scaffold_12 . exon 873749 873777 . - . ID=Physo130797.3;Parent=Physo130797;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . CDS 873866 874826 . - 0 ID=Physo130797;Parent=Physo130797;rank=2 scaffold_12 . exon 873866 874826 . - . ID=Physo130797.2;Parent=Physo130797;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . CDS 875019 876872 . - 0 ID=Physo130797;Parent=Physo130797;rank=1 scaffold_12 . exon 875019 876872 . - . ID=Physo130797.1;Parent=Physo130797;constitutive=1;rank=1 scaffold_12 . biological_region 875959 875959 0.999 + . logic_name=eponine scaffold_12 . repeat_region 877478 877527 . ? . description=dust scaffold_12 . repeat_region 879238 879287 . ? . description=dust scaffold_12 . repeat_region 879869 879899 . - . description=Polinton-1_PI scaffold_12 . repeat_region 880053 880256 . - . description=Polinton-1_PI scaffold_12 . repeat_region 880565 883780 . ? . description=dust scaffold_12 . biological_region 884041 884044 0.999 - . logic_name=eponine scaffold_12 . repeat_region 885058 885066 . ? . description=dust scaffold_12 ensembl protein_coding_gene 876959 879184 . - . ID=Physo130798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120230;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 876959 879184 . - . ID=Physo130798;Parent=Physo130798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 876959 877262 . - . ID=Physo130798.5;Parent=Physo130798;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_12 . CDS 877047 877262 . - 0 ID=Physo130798;Parent=Physo130798;rank=5 scaffold_12 . CDS 877325 877425 . - 0 ID=Physo130798;Parent=Physo130798;rank=4 scaffold_12 . exon 877325 877425 . - . ID=Physo130798.4;Parent=Physo130798;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . CDS 877547 878333 . - 0 ID=Physo130798;Parent=Physo130798;rank=3 scaffold_12 . exon 877547 878333 . - . ID=Physo130798.3;Parent=Physo130798;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_12 . CDS 878526 878853 . - 0 ID=Physo130798;Parent=Physo130798;rank=2 scaffold_12 . exon 878526 878853 . - . ID=Physo130798.2;Parent=Physo130798;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 879177 879184 . - 0 ID=Physo130798;Parent=Physo130798;rank=1 scaffold_12 . exon 879177 879184 . - . ID=Physo130798.1;Parent=Physo130798;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . repeat_region 886948 886993 . ? . description=trf scaffold_12 . repeat_region 887414 887437 . ? . description=trf scaffold_12 . repeat_region 888473 888569 . ? . description=trf scaffold_12 . repeat_region 888475 888555 . ? . description=trf scaffold_12 . repeat_region 888475 888569 . ? . description=trf scaffold_12 . repeat_region 889592 889637 . ? . description=trf scaffold_12 . repeat_region 891233 891278 . ? . description=trf scaffold_12 . repeat_region 891243 891289 . ? . description=trf scaffold_12 . repeat_region 893474 893515 . ? . description=trf scaffold_12 . repeat_region 893945 894010 . ? . description=trf scaffold_12 ensembl protein_coding_gene 895442 899046 . + . ID=Physo130799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120231;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 895442 899046 . + . ID=Physo130799;Parent=Physo130799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 895442 896281 . + 0 ID=Physo130799;Parent=Physo130799;rank=1 scaffold_12 . exon 895442 896281 . + . ID=Physo130799.1;Parent=Physo130799;constitutive=1;rank=1 scaffold_12 . CDS 896301 896916 . + 0 ID=Physo130799;Parent=Physo130799;rank=2 scaffold_12 . CDS 897065 897126 . + 0 ID=Physo130799;Parent=Physo130799;rank=3 scaffold_12 . CDS 897265 899046 . + 0 ID=Physo130799;Parent=Physo130799;rank=4 scaffold_12 . biological_region 895598 895600 0.999 - . logic_name=eponine scaffold_12 . repeat_region 899274 899290 . ? . description=dust scaffold_12 . biological_region 900656 900663 0.999 + . logic_name=eponine scaffold_12 . biological_region 901011 901015 0.999 - . logic_name=eponine scaffold_12 . biological_region 901613 901613 0.999 + . logic_name=eponine scaffold_12 . biological_region 901869 901872 0.999 - . logic_name=eponine scaffold_12 . biological_region 904069 904072 0.999 + . logic_name=eponine scaffold_12 . biological_region 904528 904529 0.999 - . logic_name=eponine scaffold_12 . exon 896301 896916 . + . ID=Physo130799.2;Parent=Physo130799;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_12 . exon 897065 897126 . + . ID=Physo130799.3;Parent=Physo130799;constitutive=1;ensembl_phase=1;rank=3 scaffold_12 . exon 897265 899046 . + . ID=Physo130799.4;Parent=Physo130799;constitutive=1;rank=4 scaffold_12 ensembl protein_coding_gene 900833 902710 . + . ID=Physo130800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120232;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 900833 902710 . + . ID=Physo130800;Parent=Physo130800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . exon 900833 901347 . + . ID=Physo130800.1;Parent=Physo130800;constitutive=1;ensembl_phase=-1;rank=1 scaffold_12 . CDS 900889 901347 . + 0 ID=Physo130800;Parent=Physo130800;rank=1 scaffold_12 . CDS 901371 902639 . + 0 ID=Physo130800;Parent=Physo130800;rank=2 scaffold_12 . exon 901371 902710 . + . ID=Physo130800.2;Parent=Physo130800;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_12 ensembl protein_coding_gene 902729 904519 . - . ID=Physo130801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120233;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 902729 904519 . - . ID=Physo130801;Parent=Physo130801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 902729 904519 . - 0 ID=Physo130801;Parent=Physo130801;rank=1 scaffold_12 . exon 902729 904519 . - . ID=Physo130801.1;Parent=Physo130801;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 905140 905801 . - . ID=Physo130802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120234;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 905140 905801 . - . ID=Physo130802;Parent=Physo130802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 905140 905613 . - 0 ID=Physo130802;Parent=Physo130802;rank=2 scaffold_12 . exon 905140 905613 . - . ID=Physo130802.2;Parent=Physo130802;constitutive=1;rank=2 scaffold_12 . CDS 905703 905801 . - 0 ID=Physo130802;Parent=Physo130802;rank=1 scaffold_12 . repeat_region 909176 909209 . ? . description=trf scaffold_12 . exon 905703 905801 . - . ID=Physo130802.1;Parent=Physo130802;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 909878 911623 . + . ID=Physo130803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120235;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 909878 911623 . + . ID=Physo130803;Parent=Physo130803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 909878 911623 . + 0 ID=Physo130803;Parent=Physo130803;rank=1 scaffold_12 . exon 909878 911623 . + . ID=Physo130803.1;Parent=Physo130803;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 911675 913218 . - . ID=Physo130804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120236;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 911675 913218 . - . ID=Physo130804;Parent=Physo130804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 911675 912035 . - 0 ID=Physo130804;Parent=Physo130804;rank=2 scaffold_12 . exon 911675 912035 . - . ID=Physo130804.2;Parent=Physo130804;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 912218 913218 . - 0 ID=Physo130804;Parent=Physo130804;rank=1 scaffold_12 . exon 912218 913218 . - . ID=Physo130804.1;Parent=Physo130804;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 ensembl protein_coding_gene 915150 924100 . + . ID=Physo130805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120237;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 915150 924100 . + . ID=Physo130805;Parent=Physo130805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 915150 915351 . + 0 ID=Physo130805;Parent=Physo130805;rank=1 scaffold_12 . exon 915150 915351 . + . ID=Physo130805.1;Parent=Physo130805;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . CDS 915821 915939 . + 0 ID=Physo130805;Parent=Physo130805;rank=2 scaffold_12 . CDS 916015 916076 . + 0 ID=Physo130805;Parent=Physo130805;rank=3 scaffold_12 . CDS 916222 916381 . + 0 ID=Physo130805;Parent=Physo130805;rank=4 scaffold_12 . CDS 916402 916574 . + 0 ID=Physo130805;Parent=Physo130805;rank=5 scaffold_12 . CDS 916625 917121 . + 0 ID=Physo130805;Parent=Physo130805;rank=6 scaffold_12 . CDS 917279 917571 . + 0 ID=Physo130805;Parent=Physo130805;rank=7 scaffold_12 . CDS 917625 918349 . + 0 ID=Physo130805;Parent=Physo130805;rank=8 scaffold_12 . CDS 918398 918995 . + 0 ID=Physo130805;Parent=Physo130805;rank=9 scaffold_12 . CDS 919074 919418 . + 0 ID=Physo130805;Parent=Physo130805;rank=10 scaffold_12 . CDS 919476 919657 . + 0 ID=Physo130805;Parent=Physo130805;rank=11 scaffold_12 . CDS 919682 920238 . + 0 ID=Physo130805;Parent=Physo130805;rank=12 scaffold_12 . CDS 920438 921079 . + 0 ID=Physo130805;Parent=Physo130805;rank=13 scaffold_12 . CDS 921116 922060 . + 0 ID=Physo130805;Parent=Physo130805;rank=14 scaffold_12 . CDS 922163 922661 . + 0 ID=Physo130805;Parent=Physo130805;rank=15 scaffold_12 . CDS 923026 923632 . + 0 ID=Physo130805;Parent=Physo130805;rank=16 scaffold_12 . CDS 923750 924100 . + 0 ID=Physo130805;Parent=Physo130805;rank=17 scaffold_12 . repeat_region 915981 915991 . ? . description=dust scaffold_12 . biological_region 916316 916321 0.999 + . logic_name=eponine scaffold_12 . biological_region 916355 916357 0.999 + . logic_name=eponine scaffold_12 . biological_region 916400 916403 0.999 + . logic_name=eponine scaffold_12 . biological_region 917141 917145 0.999 + . logic_name=eponine scaffold_12 . biological_region 918983 918984 0.999 + . logic_name=eponine scaffold_12 . biological_region 919085 919088 0.999 - . logic_name=eponine scaffold_12 . biological_region 919361 919364 0.999 + . logic_name=eponine scaffold_12 . biological_region 919521 919527 0.999 - . logic_name=eponine scaffold_12 . biological_region 920406 920409 0.999 + . logic_name=eponine scaffold_12 . biological_region 920600 920600 0.999 + . logic_name=eponine scaffold_12 . biological_region 923725 923726 0.999 + . logic_name=eponine scaffold_12 . biological_region 924610 924614 0.999 - . logic_name=eponine scaffold_12 . exon 915821 915939 . + . ID=Physo130805.2;Parent=Physo130805;constitutive=1;ensembl_phase=1;rank=2 scaffold_12 . exon 916015 916076 . + . ID=Physo130805.3;Parent=Physo130805;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_12 . exon 916222 916381 . + . ID=Physo130805.4;Parent=Physo130805;constitutive=1;ensembl_phase=2;rank=4 scaffold_12 . exon 916402 916574 . + . ID=Physo130805.5;Parent=Physo130805;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_12 . exon 916625 917121 . + . ID=Physo130805.6;Parent=Physo130805;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_12 . exon 917279 917571 . + . ID=Physo130805.7;Parent=Physo130805;constitutive=1;ensembl_phase=1;rank=7 scaffold_12 . exon 917625 918349 . + . ID=Physo130805.8;Parent=Physo130805;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_12 . exon 918398 918995 . + . ID=Physo130805.9;Parent=Physo130805;constitutive=1;ensembl_phase=2;rank=9 scaffold_12 . exon 919074 919418 . + . ID=Physo130805.10;Parent=Physo130805;constitutive=1;rank=10 scaffold_12 . exon 919476 919657 . + . ID=Physo130805.11;Parent=Physo130805;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_12 . exon 919682 920238 . + . ID=Physo130805.12;Parent=Physo130805;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_12 . exon 920438 921079 . + . ID=Physo130805.13;Parent=Physo130805;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_12 . exon 921116 922060 . + . ID=Physo130805.14;Parent=Physo130805;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_12 . exon 922163 922661 . + . ID=Physo130805.15;Parent=Physo130805;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=15 scaffold_12 . exon 923026 923632 . + . ID=Physo130805.16;Parent=Physo130805;constitutive=1;ensembl_phase=2;rank=16 scaffold_12 . exon 923750 924100 . + . ID=Physo130805.17;Parent=Physo130805;constitutive=1;rank=17 scaffold_12 ensembl protein_coding_gene 924640 925023 . + . ID=Physo130806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120238;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 924640 925023 . + . ID=Physo130806;Parent=Physo130806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 924640 925023 . + 0 ID=Physo130806;Parent=Physo130806;rank=1 scaffold_12 . exon 924640 925023 . + . ID=Physo130806.1;Parent=Physo130806;constitutive=1;rank=1 scaffold_12 ensembl protein_coding_gene 925215 927099 . - . ID=Physo130807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120239;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 925215 927099 . - . ID=Physo130807;Parent=Physo130807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 925215 926438 . - 0 ID=Physo130807;Parent=Physo130807;rank=3 scaffold_12 . exon 925215 926438 . - . ID=Physo130807.3;Parent=Physo130807;constitutive=1;rank=3 scaffold_12 . CDS 926516 926854 . - 0 ID=Physo130807;Parent=Physo130807;rank=2 scaffold_12 . CDS 926998 927099 . - 0 ID=Physo130807;Parent=Physo130807;rank=1 scaffold_12 . repeat_region 925547 925566 . ? . description=trf scaffold_12 . repeat_region 926382 926441 . ? . description=trf scaffold_12 . repeat_region 928441 928498 . ? . description=trf scaffold_12 . exon 926516 926854 . - . ID=Physo130807.2;Parent=Physo130807;constitutive=1;rank=2 scaffold_12 . exon 926998 927099 . - . ID=Physo130807.1;Parent=Physo130807;constitutive=1;rank=1 scaffold_12 . biological_region 938649 938654 0.999 - . logic_name=eponine scaffold_12 . biological_region 938708 938709 0.999 + . logic_name=eponine scaffold_12 . repeat_region 939875 939890 . ? . description=dust scaffold_12 . biological_region 939921 939924 0.999 + . logic_name=eponine scaffold_12 . biological_region 939993 940002 0.999 + . logic_name=eponine scaffold_12 . biological_region 940048 940053 0.999 + . logic_name=eponine scaffold_12 . biological_region 940082 940085 0.999 + . logic_name=eponine scaffold_12 . biological_region 940083 940100 0.999 - . logic_name=eponine scaffold_12 . biological_region 940126 940127 0.999 - . logic_name=eponine scaffold_12 . biological_region 940168 940172 0.999 - . logic_name=eponine scaffold_12 . biological_region 940833 940834 0.999 + . logic_name=eponine scaffold_12 . biological_region 941718 941720 0.999 + . logic_name=eponine scaffold_12 . repeat_region 941850 941907 . ? . description=dust scaffold_12 . biological_region 944410 944412 0.999 - . logic_name=eponine scaffold_12 ensembl protein_coding_gene 939441 941850 . - . ID=Physo130808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120240;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 939441 941850 . - . ID=Physo130808;Parent=Physo130808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 939441 939851 . - 0 ID=Physo130808;Parent=Physo130808;rank=5 scaffold_12 . exon 939441 939851 . - . ID=Physo130808.5;Parent=Physo130808;constitutive=1;rank=5 scaffold_12 . CDS 940000 940533 . - 0 ID=Physo130808;Parent=Physo130808;rank=4 scaffold_12 . exon 940000 940533 . - . ID=Physo130808.4;Parent=Physo130808;constitutive=1;rank=4 scaffold_12 . CDS 940638 940644 . - 0 ID=Physo130808;Parent=Physo130808;rank=3 scaffold_12 . exon 940638 940644 . - . ID=Physo130808.3;Parent=Physo130808;constitutive=1;ensembl_phase=2;rank=3 scaffold_12 . CDS 940902 941394 . - 0 ID=Physo130808;Parent=Physo130808;rank=2 scaffold_12 . exon 940902 941394 . - . ID=Physo130808.2;Parent=Physo130808;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_12 . CDS 941505 941850 . - 0 ID=Physo130808;Parent=Physo130808;rank=1 scaffold_12 . exon 941505 941850 . - . ID=Physo130808.1;Parent=Physo130808;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_12 . repeat_region 947605 947662 . ? . description=trf scaffold_12 . repeat_region 951089 951213 . ? . description=trf scaffold_12 . repeat_region 951089 951213 . ? . description=trf scaffold_12 . repeat_region 951928 951998 . ? . description=trf scaffold_12 ensembl protein_coding_gene 947917 950752 . + . ID=Physo130809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_120241;logic_name=jgi_physo1_1 scaffold_12 ensembl transcript 947917 950752 . + . ID=Physo130809;Parent=Physo130809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_12 . CDS 947917 948293 . + 0 ID=Physo130809;Parent=Physo130809;rank=1 scaffold_12 . exon 947917 948293 . + . ID=Physo130809.1;Parent=Physo130809;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_12 . CDS 948362 948524 . + 0 ID=Physo130809;Parent=Physo130809;rank=2 scaffold_12 . exon 948362 948524 . + . ID=Physo130809.2;Parent=Physo130809;constitutive=1;ensembl_phase=2;rank=2 scaffold_12 . CDS 949468 949777 . + 0 ID=Physo130809;Parent=Physo130809;rank=3 scaffold_12 . exon 949468 949777 . + . ID=Physo130809.3;Parent=Physo130809;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_12 . CDS 949836 950752 . + 0 ID=Physo130809;Parent=Physo130809;rank=4 scaffold_12 . exon 949836 950752 . + . ID=Physo130809.4;Parent=Physo130809;constitutive=1;ensembl_phase=1;rank=4 scaffold_12 . repeat_region 955731 955739 . ? . description=dust scaffold_12 . repeat_region 956363 956370 . ? . description=dust scaffold_12 . biological_region 956540 956543 0.999 + . logic_name=eponine scaffold_12 . repeat_region 957516 973690 . ? . description=dust scaffold_12 . repeat_region 973691 974049 . + . description=GypsyPi-1c_I-int scaffold_12 . repeat_region 974385 974538 . + . description=GypsyPi-1c_I-int ##gff-version 3 ##sequence-region scaffold_10 1 1027410 scaffold_10 . repeat_region 1580 2351 . ? . description=dust scaffold_10 . repeat_region 3020 4626 . - . description=GypsyPi-1c_I-int scaffold_10 . repeat_region 4632 4681 . ? . description=dust scaffold_10 . repeat_region 4689 5058 . - . description=GypsyPi-1c_I-int scaffold_10 . biological_region 5590 5590 0.999 + . logic_name=eponine scaffold_10 . biological_region 5626 5629 0.999 + . logic_name=eponine scaffold_10 . biological_region 5652 5657 0.999 - . logic_name=eponine scaffold_10 . biological_region 6084 6086 0.999 - . logic_name=eponine scaffold_10 . repeat_region 6222 6271 . ? . description=dust scaffold_10 . biological_region 7472 7476 0.999 - . logic_name=eponine scaffold_10 . repeat_region 8419 8468 . ? . description=dust scaffold_10 ensembl protein_coding_gene 5 5731 . - . ID=Physo130043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100001;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 5 5731 . - . ID=Physo130043;Parent=Physo130043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 5 676 . - 0 ID=Physo130043;Parent=Physo130043;rank=7 scaffold_10 . exon 5 676 . - . ID=Physo130043.7;Parent=Physo130043;constitutive=1;rank=7 scaffold_10 . CDS 1087 1531 . - 0 ID=Physo130043;Parent=Physo130043;rank=6 scaffold_10 . exon 1087 1531 . - . ID=Physo130043.6;Parent=Physo130043;constitutive=1;ensembl_phase=2;rank=6 scaffold_10 . CDS 2380 2617 . - 0 ID=Physo130043;Parent=Physo130043;rank=5 scaffold_10 . exon 2380 2617 . - . ID=Physo130043.5;Parent=Physo130043;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_10 . CDS 2693 3796 . - 0 ID=Physo130043;Parent=Physo130043;rank=4 scaffold_10 . exon 2693 3796 . - . ID=Physo130043.4;Parent=Physo130043;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 3828 4581 . - 0 ID=Physo130043;Parent=Physo130043;rank=3 scaffold_10 . exon 3828 4581 . - . ID=Physo130043.3;Parent=Physo130043;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 4773 5414 . - 0 ID=Physo130043;Parent=Physo130043;rank=2 scaffold_10 . exon 4773 5414 . - . ID=Physo130043.2;Parent=Physo130043;constitutive=1;rank=2 scaffold_10 . CDS 5528 5731 . - 0 ID=Physo130043;Parent=Physo130043;rank=1 scaffold_10 . exon 5528 5731 . - . ID=Physo130043.1;Parent=Physo130043;constitutive=1;rank=1 scaffold_10 . repeat_region 13673 13714 . ? . description=trf scaffold_10 . repeat_region 13821 13869 . ? . description=trf scaffold_10 . repeat_region 16194 16261 . ? . description=trf scaffold_10 ensembl protein_coding_gene 10311 10721 . + . ID=Physo130044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100002;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 10311 10721 . + . ID=Physo130044;Parent=Physo130044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 10311 10721 . + 0 ID=Physo130044;Parent=Physo130044;rank=1 scaffold_10 . exon 10311 10721 . + . ID=Physo130044.1;Parent=Physo130044;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 12075 13427 . - . ID=Physo130045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100003;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 12075 13427 . - . ID=Physo130045;Parent=Physo130045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 12075 12141 . - 0 ID=Physo130045;Parent=Physo130045;rank=2 scaffold_10 . exon 12075 12141 . - . ID=Physo130045.2;Parent=Physo130045;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 12301 13427 . - 0 ID=Physo130045;Parent=Physo130045;rank=1 scaffold_10 . exon 12301 13427 . - . ID=Physo130045.1;Parent=Physo130045;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 16453 19227 . + . ID=Physo130046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100004;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 16453 19227 . + . ID=Physo130046;Parent=Physo130046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 16453 17239 . + 0 ID=Physo130046;Parent=Physo130046;rank=1 scaffold_10 . exon 16453 17239 . + . ID=Physo130046.1;Parent=Physo130046;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 17621 17743 . + 0 ID=Physo130046;Parent=Physo130046;rank=2 scaffold_10 . exon 17621 17743 . + . ID=Physo130046.2;Parent=Physo130046;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 17846 19227 . + 0 ID=Physo130046;Parent=Physo130046;rank=3 scaffold_10 . exon 17846 19227 . + . ID=Physo130046.3;Parent=Physo130046;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . repeat_region 20668 20675 . ? . description=dust scaffold_10 . biological_region 20983 20986 0.999 + . logic_name=eponine scaffold_10 . biological_region 21068 21070 0.999 - . logic_name=eponine scaffold_10 . biological_region 21125 21126 0.999 + . logic_name=eponine scaffold_10 . biological_region 21652 21656 0.999 - . logic_name=eponine scaffold_10 . biological_region 21659 21663 0.999 - . logic_name=eponine scaffold_10 . repeat_region 23727 23734 . ? . description=dust scaffold_10 . biological_region 24068 24071 0.999 - . logic_name=eponine scaffold_10 . biological_region 26212 26216 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 23776 24413 . + . ID=Physo130047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100005;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 23776 24413 . + . ID=Physo130047;Parent=Physo130047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 23776 24288 . + 0 ID=Physo130047;Parent=Physo130047;rank=1 scaffold_10 . exon 23776 24413 . + . ID=Physo130047.1;Parent=Physo130047;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 24465 26405 . - . ID=Physo130048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100006;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 24465 26405 . - . ID=Physo130048;Parent=Physo130048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 24465 26005 . - 0 ID=Physo130048;Parent=Physo130048;rank=2 scaffold_10 . exon 24465 26005 . - . ID=Physo130048.2;Parent=Physo130048;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 26087 26405 . - 0 ID=Physo130048;Parent=Physo130048;rank=1 scaffold_10 . exon 26087 26405 . - . ID=Physo130048.1;Parent=Physo130048;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 26565 26986 . - . ID=Physo130049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100007;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 26565 26986 . - . ID=Physo130049;Parent=Physo130049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 26565 26918 . - 0 ID=Physo130049;Parent=Physo130049;rank=2 scaffold_10 . exon 26565 26918 . - . ID=Physo130049.2;Parent=Physo130049;constitutive=1;rank=2 scaffold_10 . CDS 26984 26986 . - 0 ID=Physo130049;Parent=Physo130049;rank=1 scaffold_10 . exon 26984 26986 . - . ID=Physo130049.1;Parent=Physo130049;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 30939 32590 . - . ID=Physo108442;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100001;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 30939 32590 . - . ID=Physo108442;Parent=Physo108442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 30939 31909 . - . ID=Physo108442.3;Parent=Physo108442;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_10 . CDS 31094 31909 . - 0 ID=Physo108442;Parent=Physo108442;rank=3 scaffold_10 . CDS 32006 32542 . - 0 ID=Physo108442;Parent=Physo108442;rank=2 scaffold_10 . exon 32006 32542 . - . ID=Physo108442.2;Parent=Physo108442;constitutive=1;rank=2 scaffold_10 . CDS 32570 32590 . - 0 ID=Physo108442;Parent=Physo108442;rank=1 scaffold_10 . exon 32570 32590 . - . ID=Physo108442.1;Parent=Physo108442;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 33670 34782 . + . ID=Physo112750;biotype=protein_coding;external_name=estExt_Genewise1.C_100196;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 33670 34782 . + . ID=Physo112750;Parent=Physo112750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 33670 34782 . + . ID=Physo112750.1;Parent=Physo112750;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 33682 34782 . + 0 ID=Physo112750;Parent=Physo112750;rank=1 scaffold_10 ensembl protein_coding_gene 36460 37128 . + . ID=Physo130052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100010;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 36460 37128 . + . ID=Physo130052;Parent=Physo130052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 36460 37128 . + 0 ID=Physo130052;Parent=Physo130052;rank=1 scaffold_10 . exon 36460 37128 . + . ID=Physo130052.1;Parent=Physo130052;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 39214 41377 . + . ID=Physo130054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100012;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 39214 41377 . + . ID=Physo130054;Parent=Physo130054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 39214 41209 . + 0 ID=Physo130054;Parent=Physo130054;rank=1 scaffold_10 . exon 39214 41209 . + . ID=Physo130054.1;Parent=Physo130054;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 41289 41377 . + 0 ID=Physo130054;Parent=Physo130054;rank=2 scaffold_10 ensembl protein_coding_gene 37826 38221 . - . ID=Physo155984;biotype=protein_coding;external_name=C_scaffold_10000003;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 37826 38221 . - . ID=Physo155984;Parent=Physo155984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 37826 38221 . - 0 ID=Physo155984;Parent=Physo155984;rank=1 scaffold_10 . exon 37826 38221 . - . ID=Physo155984.1;Parent=Physo155984;constitutive=1;rank=1 scaffold_10 . biological_region 41621 41622 0.999 - . logic_name=eponine scaffold_10 . biological_region 45907 45907 0.999 + . logic_name=eponine scaffold_10 . biological_region 46037 46039 0.999 - . logic_name=eponine scaffold_10 . repeat_region 48941 48953 . ? . description=dust scaffold_10 . biological_region 49219 49221 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 43776 45435 . - . ID=Physo108443;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100002;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 43776 45435 . - . ID=Physo108443;Parent=Physo108443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 43776 43928 . - . ID=Physo108443.6;Parent=Physo108443;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_10 . CDS 43777 43928 . - 0 ID=Physo108443;Parent=Physo108443;rank=6 scaffold_10 . CDS 43987 44506 . - 0 ID=Physo108443;Parent=Physo108443;rank=5 scaffold_10 . exon 43987 44506 . - . ID=Physo108443.5;Parent=Physo108443;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 44574 44721 . - 0 ID=Physo108443;Parent=Physo108443;rank=4 scaffold_10 . exon 44574 44721 . - . ID=Physo108443.4;Parent=Physo108443;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 44820 44968 . - 0 ID=Physo108443;Parent=Physo108443;rank=3 scaffold_10 . exon 44820 44968 . - . ID=Physo108443.3;Parent=Physo108443;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 45048 45116 . - 0 ID=Physo108443;Parent=Physo108443;rank=2 scaffold_10 . exon 45048 45116 . - . ID=Physo108443.2;Parent=Physo108443;constitutive=1;rank=2 scaffold_10 . CDS 45193 45276 . - 0 ID=Physo108443;Parent=Physo108443;rank=1 scaffold_10 . exon 45193 45435 . - . ID=Physo108443.1;Parent=Physo108443;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . exon 41289 41377 . + . ID=Physo130054.2;Parent=Physo130054;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 41523 42761 . + . ID=Physo130055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100013;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 41523 42761 . + . ID=Physo130055;Parent=Physo130055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 41523 42147 . + 0 ID=Physo130055;Parent=Physo130055;rank=1 scaffold_10 . exon 41523 42147 . + . ID=Physo130055.1;Parent=Physo130055;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 42222 42313 . + 0 ID=Physo130055;Parent=Physo130055;rank=2 scaffold_10 . exon 42222 42313 . + . ID=Physo130055.2;Parent=Physo130055;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 42384 42761 . + 0 ID=Physo130055;Parent=Physo130055;rank=3 scaffold_10 . exon 42384 42761 . + . ID=Physo130055.3;Parent=Physo130055;constitutive=1;rank=3 scaffold_10 ensembl protein_coding_gene 46901 48930 . - . ID=Physo130057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100015;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 46901 48930 . - . ID=Physo130057;Parent=Physo130057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 46901 47218 . - . ID=Physo130057.6;Parent=Physo130057;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_10 . CDS 46967 47218 . - 0 ID=Physo130057;Parent=Physo130057;rank=6 scaffold_10 . CDS 47308 47363 . - 0 ID=Physo130057;Parent=Physo130057;rank=5 scaffold_10 . exon 47308 47363 . - . ID=Physo130057.5;Parent=Physo130057;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 47455 47722 . - 0 ID=Physo130057;Parent=Physo130057;rank=4 scaffold_10 . exon 47455 47722 . - . ID=Physo130057.4;Parent=Physo130057;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 47897 48418 . - 0 ID=Physo130057;Parent=Physo130057;rank=3 scaffold_10 . exon 47897 48418 . - . ID=Physo130057.3;Parent=Physo130057;constitutive=1;rank=3 scaffold_10 . CDS 48494 48667 . - 0 ID=Physo130057;Parent=Physo130057;rank=2 scaffold_10 . exon 48494 48667 . - . ID=Physo130057.2;Parent=Physo130057;constitutive=1;rank=2 scaffold_10 . CDS 48772 48930 . - 0 ID=Physo130057;Parent=Physo130057;rank=1 scaffold_10 . exon 48772 48930 . - . ID=Physo130057.1;Parent=Physo130057;constitutive=1;rank=1 scaffold_10 . repeat_region 55513 55612 . ? . description=trf scaffold_10 ensembl protein_coding_gene 54832 55636 . - . ID=Physo130058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100016;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 54832 55636 . - . ID=Physo130058;Parent=Physo130058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 54832 54847 . - 0 ID=Physo130058;Parent=Physo130058;rank=3 scaffold_10 . exon 54832 54847 . - . ID=Physo130058.3;Parent=Physo130058;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 54916 55426 . - 0 ID=Physo130058;Parent=Physo130058;rank=2 scaffold_10 . exon 54916 55426 . - . ID=Physo130058.2;Parent=Physo130058;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 55507 55636 . - 0 ID=Physo130058;Parent=Physo130058;rank=1 scaffold_10 . exon 55507 55636 . - . ID=Physo130058.1;Parent=Physo130058;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 55731 56532 . + . ID=Physo130059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100017;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 55731 56532 . + . ID=Physo130059;Parent=Physo130059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 55731 56162 . + 0 ID=Physo130059;Parent=Physo130059;rank=1 scaffold_10 . exon 55731 56162 . + . ID=Physo130059.1;Parent=Physo130059;constitutive=1;rank=1 scaffold_10 . CDS 56266 56358 . + 0 ID=Physo130059;Parent=Physo130059;rank=2 scaffold_10 . exon 56266 56358 . + . ID=Physo130059.2;Parent=Physo130059;constitutive=1;rank=2 scaffold_10 . CDS 56473 56532 . + 0 ID=Physo130059;Parent=Physo130059;rank=3 scaffold_10 . exon 56473 56532 . + . ID=Physo130059.3;Parent=Physo130059;constitutive=1;rank=3 scaffold_10 ensembl protein_coding_gene 56837 58289 . + . ID=Physo130060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100018;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 56837 58289 . + . ID=Physo130060;Parent=Physo130060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 56837 58289 . + . ID=Physo130060.1;Parent=Physo130060;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 56855 58219 . + 0 ID=Physo130060;Parent=Physo130060;rank=1 scaffold_10 ensembl protein_coding_gene 59816 65776 . + . ID=Physo130061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100019;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 59816 65776 . + . ID=Physo130061;Parent=Physo130061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 59816 60695 . + 0 ID=Physo130061;Parent=Physo130061;rank=1 scaffold_10 . exon 59816 60695 . + . ID=Physo130061.1;Parent=Physo130061;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 60916 61888 . + 0 ID=Physo130061;Parent=Physo130061;rank=2 scaffold_10 . CDS 62068 62225 . + 0 ID=Physo130061;Parent=Physo130061;rank=3 scaffold_10 . CDS 62323 62414 . + 0 ID=Physo130061;Parent=Physo130061;rank=4 scaffold_10 . CDS 62489 62569 . + 0 ID=Physo130061;Parent=Physo130061;rank=5 scaffold_10 . CDS 62647 62902 . + 0 ID=Physo130061;Parent=Physo130061;rank=6 scaffold_10 . CDS 62976 63368 . + 0 ID=Physo130061;Parent=Physo130061;rank=7 scaffold_10 . CDS 63439 63669 . + 0 ID=Physo130061;Parent=Physo130061;rank=8 scaffold_10 . CDS 63863 64725 . + 0 ID=Physo130061;Parent=Physo130061;rank=9 scaffold_10 . CDS 64886 65776 . + 0 ID=Physo130061;Parent=Physo130061;rank=10 scaffold_10 ensembl protein_coding_gene 58462 58674 . + . ID=Physo155989;biotype=protein_coding;external_name=C_scaffold_10000008;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 58462 58674 . + . ID=Physo155989;Parent=Physo155989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 58462 58674 . + 0 ID=Physo155989;Parent=Physo155989;rank=1 scaffold_10 . exon 58462 58674 . + . ID=Physo155989.1;Parent=Physo155989;constitutive=1;rank=1 scaffold_10 . biological_region 59915 59917 0.999 + . logic_name=eponine scaffold_10 . biological_region 59961 59966 0.999 + . logic_name=eponine scaffold_10 . biological_region 61048 61050 0.999 + . logic_name=eponine scaffold_10 . biological_region 61095 61095 0.999 + . logic_name=eponine scaffold_10 . biological_region 61121 61124 0.999 - . logic_name=eponine scaffold_10 . repeat_region 68016 68048 . ? . description=dust scaffold_10 . biological_region 69198 69201 0.999 + . logic_name=eponine scaffold_10 . exon 60916 61888 . + . ID=Physo130061.2;Parent=Physo130061;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . exon 62068 62225 . + . ID=Physo130061.3;Parent=Physo130061;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . exon 62323 62414 . + . ID=Physo130061.4;Parent=Physo130061;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . exon 62489 62569 . + . ID=Physo130061.5;Parent=Physo130061;constitutive=1;rank=5 scaffold_10 . exon 62647 62902 . + . ID=Physo130061.6;Parent=Physo130061;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_10 . exon 62976 63368 . + . ID=Physo130061.7;Parent=Physo130061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_10 . exon 63439 63669 . + . ID=Physo130061.8;Parent=Physo130061;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_10 . exon 63863 64725 . + . ID=Physo130061.9;Parent=Physo130061;constitutive=1;ensembl_phase=1;rank=9 scaffold_10 . exon 64886 65776 . + . ID=Physo130061.10;Parent=Physo130061;constitutive=1;rank=10 scaffold_10 ensembl protein_coding_gene 67062 69280 . - . ID=Physo130063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100021;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 67062 69280 . - . ID=Physo130063;Parent=Physo130063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 67062 68168 . - 0 ID=Physo130063;Parent=Physo130063;rank=4 scaffold_10 . exon 67062 68168 . - . ID=Physo130063.4;Parent=Physo130063;constitutive=1;rank=4 scaffold_10 . CDS 68245 68441 . - 0 ID=Physo130063;Parent=Physo130063;rank=3 scaffold_10 . exon 68245 68441 . - . ID=Physo130063.3;Parent=Physo130063;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 68512 69126 . - 0 ID=Physo130063;Parent=Physo130063;rank=2 scaffold_10 . exon 68512 69126 . - . ID=Physo130063.2;Parent=Physo130063;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 69220 69280 . - 0 ID=Physo130063;Parent=Physo130063;rank=1 scaffold_10 . exon 69220 69280 . - . ID=Physo130063.1;Parent=Physo130063;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 65910 66476 . - . ID=Physo155991;biotype=protein_coding;external_name=C_scaffold_10000010;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 65910 66476 . - . ID=Physo155991;Parent=Physo155991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 65910 66186 . - 0 ID=Physo155991;Parent=Physo155991;rank=2 scaffold_10 . exon 65910 66186 . - . ID=Physo155991.2;Parent=Physo155991;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 66277 66476 . - 0 ID=Physo155991;Parent=Physo155991;rank=1 scaffold_10 . exon 66277 66476 . - . ID=Physo155991.1;Parent=Physo155991;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . repeat_region 77874 77901 . ? . description=trf scaffold_10 ensembl protein_coding_gene 76804 78094 . + . ID=Physo108444;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100003;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 76804 78094 . + . ID=Physo108444;Parent=Physo108444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 76804 78094 . + . ID=Physo108444.1;Parent=Physo108444;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 76838 78046 . + 0 ID=Physo108444;Parent=Physo108444;rank=1 scaffold_10 ensembl protein_coding_gene 71914 73107 . + . ID=Physo112758;biotype=protein_coding;external_name=estExt_Genewise1.C_100204;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 71914 73107 . + . ID=Physo112758;Parent=Physo112758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 71914 73107 . + 0 ID=Physo112758;Parent=Physo112758;rank=1 scaffold_10 . exon 71914 73107 . + . ID=Physo112758.1;Parent=Physo112758;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 69958 70346 . + . ID=Physo130064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100022;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 69958 70346 . + . ID=Physo130064;Parent=Physo130064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 69958 70193 . + 0 ID=Physo130064;Parent=Physo130064;rank=1 scaffold_10 . exon 69958 70193 . + . ID=Physo130064.1;Parent=Physo130064;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 70274 70346 . + 0 ID=Physo130064;Parent=Physo130064;rank=2 scaffold_10 . exon 70274 70346 . + . ID=Physo130064.2;Parent=Physo130064;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 ensembl protein_coding_gene 73864 76203 . + . ID=Physo130065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100023;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 73864 76203 . + . ID=Physo130065;Parent=Physo130065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 73864 76203 . + 0 ID=Physo130065;Parent=Physo130065;rank=1 scaffold_10 . exon 73864 76203 . + . ID=Physo130065.1;Parent=Physo130065;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 78250 79219 . + . ID=Physo130067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100025;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 78250 79219 . + . ID=Physo130067;Parent=Physo130067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 78250 78658 . + 0 ID=Physo130067;Parent=Physo130067;rank=1 scaffold_10 . exon 78250 78658 . + . ID=Physo130067.1;Parent=Physo130067;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 78732 79219 . + 0 ID=Physo130067;Parent=Physo130067;rank=2 scaffold_10 . exon 78732 79219 . + . ID=Physo130067.2;Parent=Physo130067;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 79513 80551 . + . ID=Physo155994;biotype=protein_coding;external_name=C_scaffold_10000013;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 79513 80551 . + . ID=Physo155994;Parent=Physo155994;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 79513 79520 . + 0 ID=Physo155994;Parent=Physo155994;rank=1 scaffold_10 . exon 79513 79520 . + . ID=Physo155994.1;Parent=Physo155994;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 79602 79960 . + 0 ID=Physo155994;Parent=Physo155994;rank=2 scaffold_10 . exon 79602 79960 . + . ID=Physo155994.2;Parent=Physo155994;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 80036 80272 . + 0 ID=Physo155994;Parent=Physo155994;rank=3 scaffold_10 . CDS 80358 80551 . + 0 ID=Physo155994;Parent=Physo155994;rank=4 scaffold_10 . biological_region 80398 80401 0.999 + . logic_name=eponine scaffold_10 . biological_region 85623 85626 0.999 - . logic_name=eponine scaffold_10 . biological_region 85709 85711 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 82700 85339 . - . ID=Physo112767;biotype=protein_coding;external_name=estExt_Genewise1.C_100213;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 82700 85339 . - . ID=Physo112767;Parent=Physo112767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 82700 85339 . - . ID=Physo112767.1;Parent=Physo112767;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 82701 85328 . - 0 ID=Physo112767;Parent=Physo112767;rank=1 scaffold_10 . exon 80036 80272 . + . ID=Physo155994.3;Parent=Physo155994;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . exon 80358 80551 . + . ID=Physo155994.4;Parent=Physo155994;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 ensembl protein_coding_gene 81114 81681 . + . ID=Physo155995;biotype=protein_coding;external_name=C_scaffold_10000014;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 81114 81681 . + . ID=Physo155995;Parent=Physo155995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 81114 81434 . + 0 ID=Physo155995;Parent=Physo155995;rank=1 scaffold_10 . exon 81114 81434 . + . ID=Physo155995.1;Parent=Physo155995;constitutive=1;rank=1 scaffold_10 . CDS 81501 81585 . + 0 ID=Physo155995;Parent=Physo155995;rank=2 scaffold_10 . exon 81501 81585 . + . ID=Physo155995.2;Parent=Physo155995;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 81662 81681 . + 0 ID=Physo155995;Parent=Physo155995;rank=3 scaffold_10 . exon 81662 81681 . + . ID=Physo155995.3;Parent=Physo155995;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 ensembl protein_coding_gene 85540 86417 . + . ID=Physo155998;biotype=protein_coding;external_name=C_scaffold_10000017;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 85540 86417 . + . ID=Physo155998;Parent=Physo155998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 85540 86393 . + 0 ID=Physo155998;Parent=Physo155998;rank=1 scaffold_10 . exon 85540 86393 . + . ID=Physo155998.1;Parent=Physo155998;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 86414 86417 . + 0 ID=Physo155998;Parent=Physo155998;rank=2 scaffold_10 . exon 86414 86417 . + . ID=Physo155998.2;Parent=Physo155998;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . repeat_region 93870 93981 . ? . description=trf scaffold_10 . repeat_region 98592 98668 . ? . description=trf scaffold_10 . repeat_region 98594 98665 . ? . description=dust scaffold_10 . repeat_region 98625 98665 . ? . description=trf scaffold_10 . repeat_region 98625 98665 . ? . description=trf scaffold_10 ensembl protein_coding_gene 97593 99686 . + . ID=Physo130074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100032;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 97593 99686 . + . ID=Physo130074;Parent=Physo130074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 97593 99686 . + 0 ID=Physo130074;Parent=Physo130074;rank=1 scaffold_10 . exon 97593 99686 . + . ID=Physo130074.1;Parent=Physo130074;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 91773 97338 . - . ID=Physo155999;biotype=protein_coding;external_name=C_scaffold_10000018;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 91773 97338 . - . ID=Physo155999;Parent=Physo155999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 91773 91914 . - 0 ID=Physo155999;Parent=Physo155999;rank=8 scaffold_10 . exon 91773 91914 . - . ID=Physo155999.8;Parent=Physo155999;constitutive=1;ensembl_phase=2;rank=8 scaffold_10 . CDS 91939 92954 . - 0 ID=Physo155999;Parent=Physo155999;rank=7 scaffold_10 . exon 91939 92954 . - . ID=Physo155999.7;Parent=Physo155999;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_10 . CDS 93035 93112 . - 0 ID=Physo155999;Parent=Physo155999;rank=6 scaffold_10 . exon 93035 93112 . - . ID=Physo155999.6;Parent=Physo155999;constitutive=1;rank=6 scaffold_10 . CDS 93179 93276 . - 0 ID=Physo155999;Parent=Physo155999;rank=5 scaffold_10 . exon 93179 93276 . - . ID=Physo155999.5;Parent=Physo155999;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 93343 93473 . - 0 ID=Physo155999;Parent=Physo155999;rank=4 scaffold_10 . exon 93343 93473 . - . ID=Physo155999.4;Parent=Physo155999;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 93718 94370 . - 0 ID=Physo155999;Parent=Physo155999;rank=3 scaffold_10 . exon 93718 94370 . - . ID=Physo155999.3;Parent=Physo155999;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 94456 95711 . - 0 ID=Physo155999;Parent=Physo155999;rank=2 scaffold_10 . exon 94456 95711 . - . ID=Physo155999.2;Parent=Physo155999;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 95775 97338 . - 0 ID=Physo155999;Parent=Physo155999;rank=1 scaffold_10 . exon 95775 97338 . - . ID=Physo155999.1;Parent=Physo155999;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . biological_region 103604 103606 0.999 - . logic_name=eponine scaffold_10 . biological_region 104185 104186 0.999 - . logic_name=eponine scaffold_10 . biological_region 104435 104439 0.999 + . logic_name=eponine scaffold_10 . biological_region 108438 108447 0.999 + . logic_name=eponine scaffold_10 . biological_region 108560 108566 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 104010 105557 . + . ID=Physo108446;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100005;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 104010 105557 . + . ID=Physo108446;Parent=Physo108446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 104010 104106 . + . ID=Physo108446.1;Parent=Physo108446;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_10 . CDS 104018 104106 . + 0 ID=Physo108446;Parent=Physo108446;rank=1 scaffold_10 . CDS 104248 104326 . + 0 ID=Physo108446;Parent=Physo108446;rank=2 scaffold_10 . exon 104248 104326 . + . ID=Physo108446.2;Parent=Physo108446;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 104397 105413 . + 0 ID=Physo108446;Parent=Physo108446;rank=3 scaffold_10 . exon 104397 105557 . + . ID=Physo108446.3;Parent=Physo108446;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_10 ensembl protein_coding_gene 105700 106772 . + . ID=Physo130077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100035;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 105700 106772 . + . ID=Physo130077;Parent=Physo130077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 105700 106518 . + 0 ID=Physo130077;Parent=Physo130077;rank=1 scaffold_10 . exon 105700 106518 . + . ID=Physo130077.1;Parent=Physo130077;constitutive=1;rank=1 scaffold_10 . CDS 106752 106772 . + 0 ID=Physo130077;Parent=Physo130077;rank=2 scaffold_10 . exon 106752 106772 . + . ID=Physo130077.2;Parent=Physo130077;constitutive=1;rank=2 scaffold_10 ensembl protein_coding_gene 106907 109712 . - . ID=Physo130078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100036;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 106907 109712 . - . ID=Physo130078;Parent=Physo130078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 106907 108553 . - . ID=Physo130078.4;Parent=Physo130078;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_10 . CDS 106964 108553 . - 0 ID=Physo130078;Parent=Physo130078;rank=4 scaffold_10 . CDS 109090 109168 . - 0 ID=Physo130078;Parent=Physo130078;rank=3 scaffold_10 . exon 109090 109168 . - . ID=Physo130078.3;Parent=Physo130078;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 109253 109343 . - 0 ID=Physo130078;Parent=Physo130078;rank=2 scaffold_10 . exon 109253 109343 . - . ID=Physo130078.2;Parent=Physo130078;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 109415 109712 . - 0 ID=Physo130078;Parent=Physo130078;rank=1 scaffold_10 . exon 109415 109712 . - . ID=Physo130078.1;Parent=Physo130078;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 99777 103770 . - . ID=Physo156002;biotype=protein_coding;external_name=C_scaffold_10000021;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 99777 103770 . - . ID=Physo156002;Parent=Physo156002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 99777 99787 . - 0 ID=Physo156002;Parent=Physo156002;rank=11 scaffold_10 . exon 99777 99787 . - . ID=Physo156002.11;Parent=Physo156002;constitutive=1;ensembl_phase=1;rank=11 scaffold_10 . CDS 100009 100452 . - 0 ID=Physo156002;Parent=Physo156002;rank=10 scaffold_10 . exon 100009 100452 . - . ID=Physo156002.10;Parent=Physo156002;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_10 . CDS 100546 100687 . - 0 ID=Physo156002;Parent=Physo156002;rank=9 scaffold_10 . exon 100546 100687 . - . ID=Physo156002.9;Parent=Physo156002;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_10 . CDS 100943 101092 . - 0 ID=Physo156002;Parent=Physo156002;rank=8 scaffold_10 . exon 100943 101092 . - . ID=Physo156002.8;Parent=Physo156002;constitutive=1;rank=8 scaffold_10 . CDS 101159 101193 . - 0 ID=Physo156002;Parent=Physo156002;rank=7 scaffold_10 . exon 101159 101193 . - . ID=Physo156002.7;Parent=Physo156002;constitutive=1;ensembl_phase=1;rank=7 scaffold_10 . CDS 101855 101919 . - 0 ID=Physo156002;Parent=Physo156002;rank=6 scaffold_10 . exon 101855 101919 . - . ID=Physo156002.6;Parent=Physo156002;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_10 . CDS 101994 102095 . - 0 ID=Physo156002;Parent=Physo156002;rank=5 scaffold_10 . exon 101994 102095 . - . ID=Physo156002.5;Parent=Physo156002;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_10 . CDS 102185 103017 . - 0 ID=Physo156002;Parent=Physo156002;rank=4 scaffold_10 . exon 102185 103017 . - . ID=Physo156002.4;Parent=Physo156002;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 103222 103271 . - 0 ID=Physo156002;Parent=Physo156002;rank=3 scaffold_10 . exon 103222 103271 . - . ID=Physo156002.3;Parent=Physo156002;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 103348 103447 . - 0 ID=Physo156002;Parent=Physo156002;rank=2 scaffold_10 . exon 103348 103447 . - . ID=Physo156002.2;Parent=Physo156002;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 103510 103770 . - 0 ID=Physo156002;Parent=Physo156002;rank=1 scaffold_10 . exon 103510 103770 . - . ID=Physo156002.1;Parent=Physo156002;constitutive=1;rank=1 scaffold_10 . repeat_region 113658 113730 . ? . description=trf scaffold_10 . repeat_region 113929 113990 . ? . description=dust scaffold_10 . repeat_region 113950 113991 . ? . description=trf scaffold_10 . repeat_region 119186 119200 . ? . description=dust scaffold_10 ensembl protein_coding_gene 113135 113737 . + . ID=Physo130081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100039;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 113135 113737 . + . ID=Physo130081;Parent=Physo130081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 113135 113546 . + 0 ID=Physo130081;Parent=Physo130081;rank=1 scaffold_10 . exon 113135 113546 . + . ID=Physo130081.1;Parent=Physo130081;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 113634 113737 . + 0 ID=Physo130081;Parent=Physo130081;rank=2 scaffold_10 . exon 113634 113737 . + . ID=Physo130081.2;Parent=Physo130081;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 113861 115063 . - . ID=Physo130082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100040;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 113861 115063 . - . ID=Physo130082;Parent=Physo130082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 113861 115063 . - 0 ID=Physo130082;Parent=Physo130082;rank=1 scaffold_10 . exon 113861 115063 . - . ID=Physo130082.1;Parent=Physo130082;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 115186 116665 . + . ID=Physo130083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100041;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 115186 116665 . + . ID=Physo130083;Parent=Physo130083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 115186 115593 . + 0 ID=Physo130083;Parent=Physo130083;rank=1 scaffold_10 . exon 115186 115593 . + . ID=Physo130083.1;Parent=Physo130083;constitutive=1;rank=1 scaffold_10 . CDS 115662 115886 . + 0 ID=Physo130083;Parent=Physo130083;rank=2 scaffold_10 . exon 115662 115886 . + . ID=Physo130083.2;Parent=Physo130083;constitutive=1;rank=2 scaffold_10 . CDS 115967 116166 . + 0 ID=Physo130083;Parent=Physo130083;rank=3 scaffold_10 . exon 115967 116166 . + . ID=Physo130083.3;Parent=Physo130083;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 116243 116306 . + 0 ID=Physo130083;Parent=Physo130083;rank=4 scaffold_10 . exon 116243 116306 . + . ID=Physo130083.4;Parent=Physo130083;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 116390 116596 . + 0 ID=Physo130083;Parent=Physo130083;rank=5 scaffold_10 . exon 116390 116665 . + . ID=Physo130083.5;Parent=Physo130083;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_10 ensembl protein_coding_gene 116672 119341 . - . ID=Physo130084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100042;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 116672 119341 . - . ID=Physo130084;Parent=Physo130084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 116672 116926 . - 0 ID=Physo130084;Parent=Physo130084;rank=4 scaffold_10 . exon 116672 116926 . - . ID=Physo130084.4;Parent=Physo130084;constitutive=1;rank=4 scaffold_10 . CDS 117001 117680 . - 0 ID=Physo130084;Parent=Physo130084;rank=3 scaffold_10 . exon 117001 117680 . - . ID=Physo130084.3;Parent=Physo130084;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 117939 119146 . - 0 ID=Physo130084;Parent=Physo130084;rank=2 scaffold_10 . exon 117939 119146 . - . ID=Physo130084.2;Parent=Physo130084;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 119334 119341 . - 0 ID=Physo130084;Parent=Physo130084;rank=1 scaffold_10 . exon 119334 119341 . - . ID=Physo130084.1;Parent=Physo130084;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 109846 111001 . + . ID=Physo156006;biotype=protein_coding;external_name=C_scaffold_10000025;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 109846 111001 . + . ID=Physo156006;Parent=Physo156006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 109846 109854 . + 0 ID=Physo156006;Parent=Physo156006;rank=1 scaffold_10 . exon 109846 109854 . + . ID=Physo156006.1;Parent=Physo156006;constitutive=1;rank=1 scaffold_10 . CDS 109946 110008 . + 0 ID=Physo156006;Parent=Physo156006;rank=2 scaffold_10 . exon 109946 110008 . + . ID=Physo156006.2;Parent=Physo156006;constitutive=1;rank=2 scaffold_10 . CDS 110072 110146 . + 0 ID=Physo156006;Parent=Physo156006;rank=3 scaffold_10 . exon 110072 110146 . + . ID=Physo156006.3;Parent=Physo156006;constitutive=1;rank=3 scaffold_10 . CDS 110232 110481 . + 0 ID=Physo156006;Parent=Physo156006;rank=4 scaffold_10 . exon 110232 110481 . + . ID=Physo156006.4;Parent=Physo156006;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 110556 110656 . + 0 ID=Physo156006;Parent=Physo156006;rank=5 scaffold_10 . exon 110556 110656 . + . ID=Physo156006.5;Parent=Physo156006;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 110891 111001 . + 0 ID=Physo156006;Parent=Physo156006;rank=6 scaffold_10 . exon 110891 111001 . + . ID=Physo156006.6;Parent=Physo156006;constitutive=1;rank=6 scaffold_10 ensembl protein_coding_gene 111144 112924 . - . ID=Physo156007;biotype=protein_coding;external_name=C_scaffold_10000026;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 111144 112924 . - . ID=Physo156007;Parent=Physo156007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 111144 111236 . - 0 ID=Physo156007;Parent=Physo156007;rank=5 scaffold_10 . exon 111144 111236 . - . ID=Physo156007.5;Parent=Physo156007;constitutive=1;rank=5 scaffold_10 . CDS 111303 111315 . - 0 ID=Physo156007;Parent=Physo156007;rank=4 scaffold_10 . exon 111303 111315 . - . ID=Physo156007.4;Parent=Physo156007;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 111402 111581 . - 0 ID=Physo156007;Parent=Physo156007;rank=3 scaffold_10 . exon 111402 111581 . - . ID=Physo156007.3;Parent=Physo156007;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 111654 111774 . - 0 ID=Physo156007;Parent=Physo156007;rank=2 scaffold_10 . exon 111654 111774 . - . ID=Physo156007.2;Parent=Physo156007;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 111865 112924 . - 0 ID=Physo156007;Parent=Physo156007;rank=1 scaffold_10 . exon 111865 112924 . - . ID=Physo156007.1;Parent=Physo156007;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . biological_region 122382 122388 0.999 + . logic_name=eponine scaffold_10 . biological_region 122434 122438 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 121271 131965 . - . ID=Physo112792;biotype=protein_coding;external_name=estExt_Genewise1.C_100238;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 121271 131965 . - . ID=Physo112792;Parent=Physo112792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 121271 127654 . - 0 ID=Physo112792;Parent=Physo112792;rank=2 scaffold_10 . exon 121271 127654 . - . ID=Physo112792.2;Parent=Physo112792;constitutive=1;rank=2 scaffold_10 . CDS 127778 131575 . - 0 ID=Physo112792;Parent=Physo112792;rank=1 scaffold_10 . exon 127778 131965 . - . ID=Physo112792.1;Parent=Physo112792;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 119875 120891 . - . ID=Physo130085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100043;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 119875 120891 . - . ID=Physo130085;Parent=Physo130085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 119875 120891 . - 0 ID=Physo130085;Parent=Physo130085;rank=1 scaffold_10 . exon 119875 120891 . - . ID=Physo130085.1;Parent=Physo130085;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 135067 139317 . - . ID=Physo130088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100046;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 135067 139317 . - . ID=Physo130088;Parent=Physo130088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 135067 139317 . - 0 ID=Physo130088;Parent=Physo130088;rank=1 scaffold_10 . exon 135067 139317 . - . ID=Physo130088.1;Parent=Physo130088;constitutive=1;rank=1 scaffold_10 . repeat_region 141106 141113 . ? . description=dust scaffold_10 . repeat_region 144015 144022 . ? . description=dust scaffold_10 . biological_region 147445 147449 0.999 + . logic_name=eponine scaffold_10 . biological_region 147563 147564 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 141308 142231 . - . ID=Physo130089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100047;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 141308 142231 . - . ID=Physo130089;Parent=Physo130089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 141308 142231 . - 0 ID=Physo130089;Parent=Physo130089;rank=1 scaffold_10 . exon 141308 142231 . - . ID=Physo130089.1;Parent=Physo130089;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 143347 145047 . + . ID=Physo130090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100048;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 143347 145047 . + . ID=Physo130090;Parent=Physo130090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 143347 143448 . + 0 ID=Physo130090;Parent=Physo130090;rank=1 scaffold_10 . exon 143347 143448 . + . ID=Physo130090.1;Parent=Physo130090;constitutive=1;rank=1 scaffold_10 . CDS 143571 143696 . + 0 ID=Physo130090;Parent=Physo130090;rank=2 scaffold_10 . exon 143571 143696 . + . ID=Physo130090.2;Parent=Physo130090;constitutive=1;rank=2 scaffold_10 . CDS 143734 143836 . + 0 ID=Physo130090;Parent=Physo130090;rank=3 scaffold_10 . exon 143734 143836 . + . ID=Physo130090.3;Parent=Physo130090;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 143909 143964 . + 0 ID=Physo130090;Parent=Physo130090;rank=4 scaffold_10 . exon 143909 143964 . + . ID=Physo130090.4;Parent=Physo130090;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 144028 144104 . + 0 ID=Physo130090;Parent=Physo130090;rank=5 scaffold_10 . exon 144028 144104 . + . ID=Physo130090.5;Parent=Physo130090;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_10 . CDS 144172 144265 . + 0 ID=Physo130090;Parent=Physo130090;rank=6 scaffold_10 . exon 144172 144265 . + . ID=Physo130090.6;Parent=Physo130090;constitutive=1;ensembl_phase=2;rank=6 scaffold_10 . CDS 144495 144643 . + 0 ID=Physo130090;Parent=Physo130090;rank=7 scaffold_10 . exon 144495 144643 . + . ID=Physo130090.7;Parent=Physo130090;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_10 . CDS 144718 144847 . + 0 ID=Physo130090;Parent=Physo130090;rank=8 scaffold_10 . exon 144718 144847 . + . ID=Physo130090.8;Parent=Physo130090;constitutive=1;ensembl_phase=2;rank=8 scaffold_10 . CDS 144931 145047 . + 0 ID=Physo130090;Parent=Physo130090;rank=9 scaffold_10 . exon 144931 145047 . + . ID=Physo130090.9;Parent=Physo130090;constitutive=1;rank=9 scaffold_10 ensembl protein_coding_gene 145151 150438 . - . ID=Physo130091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100049;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 145151 150438 . - . ID=Physo130091;Parent=Physo130091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 145151 150438 . - . ID=Physo130091.1;Parent=Physo130091;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_10 . CDS 145195 150438 . - 0 ID=Physo130091;Parent=Physo130091;rank=1 scaffold_10 . repeat_region 159059 159127 . ? . description=trf scaffold_10 . repeat_region 159063 159118 . ? . description=trf scaffold_10 ensembl protein_coding_gene 158202 159397 . - . ID=Physo130092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100050;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 158202 159397 . - . ID=Physo130092;Parent=Physo130092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 158202 158215 . - 0 ID=Physo130092;Parent=Physo130092;rank=3 scaffold_10 . exon 158202 158215 . - . ID=Physo130092.3;Parent=Physo130092;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 158250 158702 . - 0 ID=Physo130092;Parent=Physo130092;rank=2 scaffold_10 . exon 158250 158702 . - . ID=Physo130092.2;Parent=Physo130092;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 158791 159397 . - 0 ID=Physo130092;Parent=Physo130092;rank=1 scaffold_10 . exon 158791 159397 . - . ID=Physo130092.1;Parent=Physo130092;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . biological_region 164145 164146 0.999 + . logic_name=eponine scaffold_10 . biological_region 164223 164230 0.999 - . logic_name=eponine scaffold_10 . biological_region 168425 168430 0.999 + . logic_name=eponine scaffold_10 . repeat_region 169244 169367 . ? . description=dust scaffold_10 . repeat_region 169473 169559 . ? . description=dust scaffold_10 ensembl protein_coding_gene 159759 161352 . - . ID=Physo130093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100051;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 159759 161352 . - . ID=Physo130093;Parent=Physo130093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 159759 161249 . - 0 ID=Physo130093;Parent=Physo130093;rank=2 scaffold_10 . exon 159759 161249 . - . ID=Physo130093.2;Parent=Physo130093;constitutive=1;rank=2 scaffold_10 . CDS 161314 161352 . - 0 ID=Physo130093;Parent=Physo130093;rank=1 scaffold_10 . exon 161314 161352 . - . ID=Physo130093.1;Parent=Physo130093;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 161696 162598 . + . ID=Physo130094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100052;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 161696 162598 . + . ID=Physo130094;Parent=Physo130094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 161696 162598 . + 0 ID=Physo130094;Parent=Physo130094;rank=1 scaffold_10 . exon 161696 162598 . + . ID=Physo130094.1;Parent=Physo130094;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 163579 165328 . + . ID=Physo130095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100053;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 163579 165328 . + . ID=Physo130095;Parent=Physo130095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 163579 163668 . + 0 ID=Physo130095;Parent=Physo130095;rank=1 scaffold_10 . exon 163579 163668 . + . ID=Physo130095.1;Parent=Physo130095;constitutive=1;rank=1 scaffold_10 . CDS 163741 163803 . + 0 ID=Physo130095;Parent=Physo130095;rank=2 scaffold_10 . exon 163741 163803 . + . ID=Physo130095.2;Parent=Physo130095;constitutive=1;rank=2 scaffold_10 . CDS 163871 165328 . + 0 ID=Physo130095;Parent=Physo130095;rank=3 scaffold_10 . exon 163871 165328 . + . ID=Physo130095.3;Parent=Physo130095;constitutive=1;rank=3 scaffold_10 ensembl protein_coding_gene 168444 169626 . - . ID=Physo130096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100054;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 168444 169626 . - . ID=Physo130096;Parent=Physo130096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 168444 169589 . - 0 ID=Physo130096;Parent=Physo130096;rank=1 scaffold_10 . exon 168444 169626 . - . ID=Physo130096.1;Parent=Physo130096;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . repeat_region 176702 176745 . ? . description=trf scaffold_10 . repeat_region 176845 176891 . ? . description=trf scaffold_10 ensembl protein_coding_gene 169805 174193 . - . ID=Physo130097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100055;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 169805 174193 . - . ID=Physo130097;Parent=Physo130097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 169805 174193 . - 0 ID=Physo130097;Parent=Physo130097;rank=1 scaffold_10 . exon 169805 174193 . - . ID=Physo130097.1;Parent=Physo130097;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 174935 177275 . - . ID=Physo130098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100056;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 174935 177275 . - . ID=Physo130098;Parent=Physo130098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 174935 174987 . - 0 ID=Physo130098;Parent=Physo130098;rank=7 scaffold_10 . exon 174935 174987 . - . ID=Physo130098.7;Parent=Physo130098;constitutive=1;ensembl_phase=1;rank=7 scaffold_10 . CDS 175064 175187 . - 0 ID=Physo130098;Parent=Physo130098;rank=6 scaffold_10 . exon 175064 175187 . - . ID=Physo130098.6;Parent=Physo130098;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_10 . CDS 175269 175346 . - 0 ID=Physo130098;Parent=Physo130098;rank=5 scaffold_10 . exon 175269 175346 . - . ID=Physo130098.5;Parent=Physo130098;constitutive=1;rank=5 scaffold_10 . CDS 175420 175956 . - 0 ID=Physo130098;Parent=Physo130098;rank=4 scaffold_10 . exon 175420 175956 . - . ID=Physo130098.4;Parent=Physo130098;constitutive=1;rank=4 scaffold_10 . CDS 176039 176297 . - 0 ID=Physo130098;Parent=Physo130098;rank=3 scaffold_10 . exon 176039 176297 . - . ID=Physo130098.3;Parent=Physo130098;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 176376 176500 . - 0 ID=Physo130098;Parent=Physo130098;rank=2 scaffold_10 . exon 176376 176500 . - . ID=Physo130098.2;Parent=Physo130098;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 176618 177202 . - 0 ID=Physo130098;Parent=Physo130098;rank=1 scaffold_10 . exon 176618 177275 . - . ID=Physo130098.1;Parent=Physo130098;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 178249 179960 . + . ID=Physo130099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100057;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 178249 179960 . + . ID=Physo130099;Parent=Physo130099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 178249 178551 . + 0 ID=Physo130099;Parent=Physo130099;rank=1 scaffold_10 . exon 178249 178551 . + . ID=Physo130099.1;Parent=Physo130099;constitutive=1;rank=1 scaffold_10 . CDS 178687 179877 . + 0 ID=Physo130099;Parent=Physo130099;rank=2 scaffold_10 . exon 178687 179877 . + . ID=Physo130099.2;Parent=Physo130099;constitutive=1;rank=2 scaffold_10 . CDS 179907 179960 . + 0 ID=Physo130099;Parent=Physo130099;rank=3 scaffold_10 . biological_region 182486 182492 0.999 + . logic_name=eponine scaffold_10 . biological_region 182555 182556 0.999 + . logic_name=eponine scaffold_10 . biological_region 184618 184622 0.999 - . logic_name=eponine scaffold_10 . biological_region 184935 184938 0.999 + . logic_name=eponine scaffold_10 . biological_region 184982 184983 0.999 - . logic_name=eponine scaffold_10 . biological_region 185068 185073 0.999 - . logic_name=eponine scaffold_10 . biological_region 185140 185144 0.999 - . logic_name=eponine scaffold_10 . biological_region 186344 186348 0.999 - . logic_name=eponine scaffold_10 . exon 179907 179960 . + . ID=Physo130099.3;Parent=Physo130099;constitutive=1;rank=3 scaffold_10 ensembl protein_coding_gene 180441 182959 . - . ID=Physo130100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100058;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 180441 182959 . - . ID=Physo130100;Parent=Physo130100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 180441 180633 . - 0 ID=Physo130100;Parent=Physo130100;rank=6 scaffold_10 . exon 180441 180633 . - . ID=Physo130100.6;Parent=Physo130100;constitutive=1;ensembl_phase=2;rank=6 scaffold_10 . CDS 180714 180815 . - 0 ID=Physo130100;Parent=Physo130100;rank=5 scaffold_10 . exon 180714 180815 . - . ID=Physo130100.5;Parent=Physo130100;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_10 . CDS 180891 180979 . - 0 ID=Physo130100;Parent=Physo130100;rank=4 scaffold_10 . exon 180891 180979 . - . ID=Physo130100.4;Parent=Physo130100;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 181060 181546 . - 0 ID=Physo130100;Parent=Physo130100;rank=3 scaffold_10 . exon 181060 181546 . - . ID=Physo130100.3;Parent=Physo130100;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 181621 181722 . - 0 ID=Physo130100;Parent=Physo130100;rank=2 scaffold_10 . exon 181621 181722 . - . ID=Physo130100.2;Parent=Physo130100;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . CDS 181791 182959 . - 0 ID=Physo130100;Parent=Physo130100;rank=1 scaffold_10 . exon 181791 182959 . - . ID=Physo130100.1;Parent=Physo130100;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 184531 203028 . + . ID=Physo130101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100059;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 184531 203028 . + . ID=Physo130101;Parent=Physo130101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 184531 203028 . + 0 ID=Physo130101;Parent=Physo130101;rank=1 scaffold_10 . exon 184531 203028 . + . ID=Physo130101.1;Parent=Physo130101;constitutive=1;rank=1 scaffold_10 . repeat_region 200701 200720 . ? . description=trf scaffold_10 . repeat_region 200875 201047 . + . description=(CGA)n scaffold_10 . repeat_region 201006 201041 . ? . description=trf scaffold_10 . biological_region 203319 203320 0.999 - . logic_name=eponine scaffold_10 . biological_region 204382 204383 0.999 - . logic_name=eponine scaffold_10 . repeat_region 207215 207222 . ? . description=dust scaffold_10 . repeat_region 208507 208551 . ? . description=trf scaffold_10 . biological_region 208836 208837 0.999 + . logic_name=eponine scaffold_10 . biological_region 208913 208916 0.999 - . logic_name=eponine scaffold_10 . biological_region 208915 208923 0.999 + . logic_name=eponine scaffold_10 . biological_region 208942 208946 0.999 - . logic_name=eponine scaffold_10 . biological_region 208957 208963 0.999 - . logic_name=eponine scaffold_10 . biological_region 208969 208971 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 184531 203028 . + . ID=Physo130101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100059;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 184531 203028 . + . ID=Physo130101;Parent=Physo130101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 184531 203028 . + 0 ID=Physo130101;Parent=Physo130101;rank=1 scaffold_10 . exon 184531 203028 . + . ID=Physo130101.1;Parent=Physo130101;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 206592 207457 . - . ID=Physo130102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100060;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 206592 207457 . - . ID=Physo130102;Parent=Physo130102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 206592 207167 . - 0 ID=Physo130102;Parent=Physo130102;rank=3 scaffold_10 . exon 206592 207167 . - . ID=Physo130102.3;Parent=Physo130102;constitutive=1;rank=3 scaffold_10 . CDS 207247 207309 . - 0 ID=Physo130102;Parent=Physo130102;rank=2 scaffold_10 . exon 207247 207309 . - . ID=Physo130102.2;Parent=Physo130102;constitutive=1;rank=2 scaffold_10 . CDS 207380 207457 . - 0 ID=Physo130102;Parent=Physo130102;rank=1 scaffold_10 . exon 207380 207457 . - . ID=Physo130102.1;Parent=Physo130102;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 207657 208451 . - . ID=Physo130103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100061;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 207657 208451 . - . ID=Physo130103;Parent=Physo130103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 207657 208310 . - 0 ID=Physo130103;Parent=Physo130103;rank=2 scaffold_10 . exon 207657 208310 . - . ID=Physo130103.2;Parent=Physo130103;constitutive=1;rank=2 scaffold_10 . CDS 208383 208451 . - 0 ID=Physo130103;Parent=Physo130103;rank=1 scaffold_10 . exon 208383 208451 . - . ID=Physo130103.1;Parent=Physo130103;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 208808 209635 . + . ID=Physo130104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100062;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 208808 209635 . + . ID=Physo130104;Parent=Physo130104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 208808 209635 . + 0 ID=Physo130104;Parent=Physo130104;rank=1 scaffold_10 . exon 208808 209635 . + . ID=Physo130104.1;Parent=Physo130104;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 209889 212612 . - . ID=Physo130105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100063;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 209889 212612 . - . ID=Physo130105;Parent=Physo130105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 209889 212612 . - 0 ID=Physo130105;Parent=Physo130105;rank=1 scaffold_10 . exon 209889 212612 . - . ID=Physo130105.1;Parent=Physo130105;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 215897 220240 . + . ID=Physo130106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100064;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 215897 220240 . + . ID=Physo130106;Parent=Physo130106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 215897 220240 . + 0 ID=Physo130106;Parent=Physo130106;rank=1 scaffold_10 . exon 215897 220240 . + . ID=Physo130106.1;Parent=Physo130106;constitutive=1;rank=1 scaffold_10 . biological_region 223332 223334 0.999 + . logic_name=eponine scaffold_10 . biological_region 223481 223481 0.999 - . logic_name=eponine scaffold_10 . repeat_region 226313 226365 . ? . description=trf scaffold_10 . biological_region 227745 227752 0.999 + . logic_name=eponine scaffold_10 . biological_region 227754 227758 0.999 - . logic_name=eponine scaffold_10 . biological_region 227773 227778 0.999 + . logic_name=eponine scaffold_10 . biological_region 227805 227813 0.999 + . logic_name=eponine scaffold_10 . repeat_region 228084 228138 . ? . description=dust scaffold_10 . repeat_region 228084 228138 . ? . description=trf scaffold_10 . biological_region 228419 228420 0.999 - . logic_name=eponine scaffold_10 . biological_region 228446 228446 0.999 - . logic_name=eponine scaffold_10 . biological_region 228463 228467 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 220373 221163 . - . ID=Physo108448;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100007;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 220373 221163 . - . ID=Physo108448;Parent=Physo108448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 220373 221163 . - . ID=Physo108448.1;Parent=Physo108448;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_10 . CDS 220426 221163 . - 0 ID=Physo108448;Parent=Physo108448;rank=1 scaffold_10 ensembl protein_coding_gene 222963 223552 . + . ID=Physo108449;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100008;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 222963 223552 . + . ID=Physo108449;Parent=Physo108449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 222963 223552 . + . ID=Physo108449.1;Parent=Physo108449;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 223030 223464 . + 0 ID=Physo108449;Parent=Physo108449;rank=1 scaffold_10 ensembl protein_coding_gene 221594 222788 . - . ID=Physo130108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100066;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 221594 222788 . - . ID=Physo130108;Parent=Physo130108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 221594 221808 . - 0 ID=Physo130108;Parent=Physo130108;rank=5 scaffold_10 . exon 221594 221808 . - . ID=Physo130108.5;Parent=Physo130108;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 221897 222389 . - 0 ID=Physo130108;Parent=Physo130108;rank=4 scaffold_10 . exon 221897 222389 . - . ID=Physo130108.4;Parent=Physo130108;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 222482 222547 . - 0 ID=Physo130108;Parent=Physo130108;rank=3 scaffold_10 . exon 222482 222547 . - . ID=Physo130108.3;Parent=Physo130108;constitutive=1;rank=3 scaffold_10 . CDS 222622 222752 . - 0 ID=Physo130108;Parent=Physo130108;rank=2 scaffold_10 . exon 222622 222752 . - . ID=Physo130108.2;Parent=Physo130108;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 222773 222788 . - 0 ID=Physo130108;Parent=Physo130108;rank=1 scaffold_10 . exon 222773 222788 . - . ID=Physo130108.1;Parent=Physo130108;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 227836 229926 . + . ID=Physo130110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100068;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 227836 229926 . + . ID=Physo130110;Parent=Physo130110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 227836 229926 . + 0 ID=Physo130110;Parent=Physo130110;rank=1 scaffold_10 . exon 227836 229926 . + . ID=Physo130110.1;Parent=Physo130110;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 230422 234231 . + . ID=Physo130111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100069;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 230422 234231 . + . ID=Physo130111;Parent=Physo130111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 230422 231704 . + 0 ID=Physo130111;Parent=Physo130111;rank=1 scaffold_10 . exon 230422 231704 . + . ID=Physo130111.1;Parent=Physo130111;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 231818 232064 . + 0 ID=Physo130111;Parent=Physo130111;rank=2 scaffold_10 . exon 231818 232064 . + . ID=Physo130111.2;Parent=Physo130111;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 232168 232287 . + 0 ID=Physo130111;Parent=Physo130111;rank=3 scaffold_10 . exon 232168 232287 . + . ID=Physo130111.3;Parent=Physo130111;constitutive=1;rank=3 scaffold_10 . CDS 232474 234231 . + 0 ID=Physo130111;Parent=Physo130111;rank=4 scaffold_10 . exon 232474 234231 . + . ID=Physo130111.4;Parent=Physo130111;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 234398 235559 . - . ID=Physo130112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100070;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 234398 235559 . - . ID=Physo130112;Parent=Physo130112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 234398 235498 . - 0 ID=Physo130112;Parent=Physo130112;rank=1 scaffold_10 . exon 234398 235559 . - . ID=Physo130112.1;Parent=Physo130112;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 238230 239944 . + . ID=Physo130113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100071;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 238230 239944 . + . ID=Physo130113;Parent=Physo130113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 238230 239944 . + . ID=Physo130113.1;Parent=Physo130113;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 238484 239839 . + 0 ID=Physo130113;Parent=Physo130113;rank=1 scaffold_10 . repeat_region 240250 240270 . ? . description=trf scaffold_10 . repeat_region 240747 240778 . ? . description=trf scaffold_10 . biological_region 240847 240849 0.999 + . logic_name=eponine scaffold_10 . biological_region 241648 241652 0.999 - . logic_name=eponine scaffold_10 . biological_region 247872 247875 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 241549 244440 . + . ID=Physo130114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100072;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 241549 244440 . + . ID=Physo130114;Parent=Physo130114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 241549 241838 . + 0 ID=Physo130114;Parent=Physo130114;rank=1 scaffold_10 . exon 241549 241838 . + . ID=Physo130114.1;Parent=Physo130114;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 241908 241989 . + 0 ID=Physo130114;Parent=Physo130114;rank=2 scaffold_10 . exon 241908 241989 . + . ID=Physo130114.2;Parent=Physo130114;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 242067 242536 . + 0 ID=Physo130114;Parent=Physo130114;rank=3 scaffold_10 . exon 242067 242536 . + . ID=Physo130114.3;Parent=Physo130114;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 242600 244196 . + 0 ID=Physo130114;Parent=Physo130114;rank=4 scaffold_10 . exon 242600 244196 . + . ID=Physo130114.4;Parent=Physo130114;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 244270 244440 . + 0 ID=Physo130114;Parent=Physo130114;rank=5 scaffold_10 . exon 244270 244440 . + . ID=Physo130114.5;Parent=Physo130114;constitutive=1;rank=5 scaffold_10 ensembl protein_coding_gene 244740 248945 . - . ID=Physo130115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100073;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 244740 248945 . - . ID=Physo130115;Parent=Physo130115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 244740 248945 . - 0 ID=Physo130115;Parent=Physo130115;rank=1 scaffold_10 . exon 244740 248945 . - . ID=Physo130115.1;Parent=Physo130115;constitutive=1;rank=1 scaffold_10 . repeat_region 255662 255693 . + . description=(GCATG)n scaffold_10 ensembl protein_coding_gene 249498 251036 . + . ID=Physo130116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100074;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 249498 251036 . + . ID=Physo130116;Parent=Physo130116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 249498 249939 . + 0 ID=Physo130116;Parent=Physo130116;rank=1 scaffold_10 . exon 249498 249939 . + . ID=Physo130116.1;Parent=Physo130116;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 250012 250120 . + 0 ID=Physo130116;Parent=Physo130116;rank=2 scaffold_10 . exon 250012 250120 . + . ID=Physo130116.2;Parent=Physo130116;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 250190 251036 . + 0 ID=Physo130116;Parent=Physo130116;rank=3 scaffold_10 . exon 250190 251036 . + . ID=Physo130116.3;Parent=Physo130116;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 ensembl protein_coding_gene 251351 253249 . + . ID=Physo130117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100075;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 251351 253249 . + . ID=Physo130117;Parent=Physo130117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 251351 252193 . + 0 ID=Physo130117;Parent=Physo130117;rank=1 scaffold_10 . exon 251351 252193 . + . ID=Physo130117.1;Parent=Physo130117;constitutive=1;rank=1 scaffold_10 . CDS 252266 252442 . + 0 ID=Physo130117;Parent=Physo130117;rank=2 scaffold_10 . exon 252266 252442 . + . ID=Physo130117.2;Parent=Physo130117;constitutive=1;rank=2 scaffold_10 . CDS 252522 252638 . + 0 ID=Physo130117;Parent=Physo130117;rank=3 scaffold_10 . exon 252522 252638 . + . ID=Physo130117.3;Parent=Physo130117;constitutive=1;rank=3 scaffold_10 . CDS 252720 252887 . + 0 ID=Physo130117;Parent=Physo130117;rank=4 scaffold_10 . exon 252720 252887 . + . ID=Physo130117.4;Parent=Physo130117;constitutive=1;rank=4 scaffold_10 . CDS 252963 253050 . + 0 ID=Physo130117;Parent=Physo130117;rank=5 scaffold_10 . exon 252963 253050 . + . ID=Physo130117.5;Parent=Physo130117;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 253128 253249 . + 0 ID=Physo130117;Parent=Physo130117;rank=6 scaffold_10 . exon 253128 253249 . + . ID=Physo130117.6;Parent=Physo130117;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 ensembl protein_coding_gene 253330 255065 . - . ID=Physo130118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100076;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 253330 255065 . - . ID=Physo130118;Parent=Physo130118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 253330 254085 . - . ID=Physo130118.2;Parent=Physo130118;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_10 . CDS 253621 254085 . - 0 ID=Physo130118;Parent=Physo130118;rank=2 scaffold_10 . CDS 254176 255024 . - 0 ID=Physo130118;Parent=Physo130118;rank=1 scaffold_10 . exon 254176 255065 . - . ID=Physo130118.1;Parent=Physo130118;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 256610 261405 . - . ID=Physo130119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100077;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 256610 261405 . - . ID=Physo130119;Parent=Physo130119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 256610 259414 . - 0 ID=Physo130119;Parent=Physo130119;rank=4 scaffold_10 . exon 256610 259414 . - . ID=Physo130119.4;Parent=Physo130119;constitutive=1;rank=4 scaffold_10 . CDS 260144 261107 . - 0 ID=Physo130119;Parent=Physo130119;rank=3 scaffold_10 . CDS 261186 261266 . - 0 ID=Physo130119;Parent=Physo130119;rank=2 scaffold_10 . CDS 261350 261405 . - 0 ID=Physo130119;Parent=Physo130119;rank=1 scaffold_10 . repeat_region 259813 259840 . ? . description=dust scaffold_10 . repeat_region 259813 259840 . ? . description=trf scaffold_10 . biological_region 260465 260466 0.999 - . logic_name=eponine scaffold_10 . biological_region 262593 262598 0.999 - . logic_name=eponine scaffold_10 . biological_region 264418 264419 0.999 - . logic_name=eponine scaffold_10 . repeat_region 269073 269109 . ? . description=trf scaffold_10 . exon 260144 261107 . - . ID=Physo130119.3;Parent=Physo130119;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . exon 261186 261266 . - . ID=Physo130119.2;Parent=Physo130119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . exon 261350 261405 . - . ID=Physo130119.1;Parent=Physo130119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 262021 262707 . + . ID=Physo130120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100078;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 262021 262707 . + . ID=Physo130120;Parent=Physo130120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 262021 262707 . + 0 ID=Physo130120;Parent=Physo130120;rank=1 scaffold_10 . exon 262021 262707 . + . ID=Physo130120.1;Parent=Physo130120;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 262845 263921 . - . ID=Physo130121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100079;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 262845 263921 . - . ID=Physo130121;Parent=Physo130121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 262845 263921 . - 0 ID=Physo130121;Parent=Physo130121;rank=1 scaffold_10 . exon 262845 263921 . - . ID=Physo130121.1;Parent=Physo130121;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 264079 269895 . - . ID=Physo130122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100080;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 264079 269895 . - . ID=Physo130122;Parent=Physo130122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 264079 269621 . - 0 ID=Physo130122;Parent=Physo130122;rank=2 scaffold_10 . exon 264079 269621 . - . ID=Physo130122.2;Parent=Physo130122;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 269703 269895 . - 0 ID=Physo130122;Parent=Physo130122;rank=1 scaffold_10 . exon 269703 269895 . - . ID=Physo130122.1;Parent=Physo130122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 273381 274569 . - . ID=Physo130123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100081;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 273381 274569 . - . ID=Physo130123;Parent=Physo130123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 273381 274114 . - . ID=Physo130123.2;Parent=Physo130123;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_10 . CDS 273508 274114 . - 0 ID=Physo130123;Parent=Physo130123;rank=2 scaffold_10 . CDS 274190 274569 . - 0 ID=Physo130123;Parent=Physo130123;rank=1 scaffold_10 . exon 274190 274569 . - . ID=Physo130123.1;Parent=Physo130123;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 276684 277669 . - . ID=Physo130124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100082;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 276684 277669 . - . ID=Physo130124;Parent=Physo130124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 276684 277347 . - 0 ID=Physo130124;Parent=Physo130124;rank=2 scaffold_10 . exon 276684 277347 . - . ID=Physo130124.2;Parent=Physo130124;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 277452 277669 . - 0 ID=Physo130124;Parent=Physo130124;rank=1 scaffold_10 . exon 277452 277669 . - . ID=Physo130124.1;Parent=Physo130124;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 278471 279823 . - . ID=Physo130125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100083;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 278471 279823 . - . ID=Physo130125;Parent=Physo130125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 278471 279823 . - 0 ID=Physo130125;Parent=Physo130125;rank=1 scaffold_10 . exon 278471 279823 . - . ID=Physo130125.1;Parent=Physo130125;constitutive=1;rank=1 scaffold_10 . biological_region 285191 285194 0.999 + . logic_name=eponine scaffold_10 . repeat_region 286428 286448 . ? . description=trf scaffold_10 . biological_region 288439 288439 0.999 + . logic_name=eponine scaffold_10 . biological_region 288506 288511 0.999 - . logic_name=eponine scaffold_10 . biological_region 288580 288580 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 280794 284547 . - . ID=Physo130126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100084;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 280794 284547 . - . ID=Physo130126;Parent=Physo130126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 280794 280948 . - 0 ID=Physo130126;Parent=Physo130126;rank=9 scaffold_10 . exon 280794 280948 . - . ID=Physo130126.9;Parent=Physo130126;constitutive=1;ensembl_phase=1;rank=9 scaffold_10 . CDS 281021 281148 . - 0 ID=Physo130126;Parent=Physo130126;rank=8 scaffold_10 . exon 281021 281148 . - . ID=Physo130126.8;Parent=Physo130126;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_10 . CDS 281224 281321 . - 0 ID=Physo130126;Parent=Physo130126;rank=7 scaffold_10 . exon 281224 281321 . - . ID=Physo130126.7;Parent=Physo130126;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_10 . CDS 281391 281484 . - 0 ID=Physo130126;Parent=Physo130126;rank=6 scaffold_10 . exon 281391 281484 . - . ID=Physo130126.6;Parent=Physo130126;constitutive=1;ensembl_phase=2;rank=6 scaffold_10 . CDS 281562 281725 . - 0 ID=Physo130126;Parent=Physo130126;rank=5 scaffold_10 . exon 281562 281725 . - . ID=Physo130126.5;Parent=Physo130126;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_10 . CDS 281752 281848 . - 0 ID=Physo130126;Parent=Physo130126;rank=4 scaffold_10 . exon 281752 281848 . - . ID=Physo130126.4;Parent=Physo130126;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 281884 282140 . - 0 ID=Physo130126;Parent=Physo130126;rank=3 scaffold_10 . exon 281884 282140 . - . ID=Physo130126.3;Parent=Physo130126;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 282226 284323 . - 0 ID=Physo130126;Parent=Physo130126;rank=2 scaffold_10 . exon 282226 284323 . - . ID=Physo130126.2;Parent=Physo130126;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 284354 284547 . - 0 ID=Physo130126;Parent=Physo130126;rank=1 scaffold_10 . exon 284354 284547 . - . ID=Physo130126.1;Parent=Physo130126;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 285083 285586 . - . ID=Physo130127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100085;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 285083 285586 . - . ID=Physo130127;Parent=Physo130127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 285083 285586 . - 0 ID=Physo130127;Parent=Physo130127;rank=1 scaffold_10 . exon 285083 285586 . - . ID=Physo130127.1;Parent=Physo130127;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 285804 287348 . - . ID=Physo130128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100086;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 285804 287348 . - . ID=Physo130128;Parent=Physo130128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 285804 286108 . - . ID=Physo130128.4;Parent=Physo130128;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_10 . CDS 285954 286108 . - 0 ID=Physo130128;Parent=Physo130128;rank=4 scaffold_10 . CDS 286182 286309 . - 0 ID=Physo130128;Parent=Physo130128;rank=3 scaffold_10 . exon 286182 286309 . - . ID=Physo130128.3;Parent=Physo130128;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 286739 286902 . - 0 ID=Physo130128;Parent=Physo130128;rank=2 scaffold_10 . exon 286739 286902 . - . ID=Physo130128.2;Parent=Physo130128;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 286986 287348 . - 0 ID=Physo130128;Parent=Physo130128;rank=1 scaffold_10 . exon 286986 287348 . - . ID=Physo130128.1;Parent=Physo130128;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 288387 288875 . + . ID=Physo130129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100087;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 288387 288875 . + . ID=Physo130129;Parent=Physo130129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 288387 288803 . + 0 ID=Physo130129;Parent=Physo130129;rank=1 scaffold_10 . exon 288387 288875 . + . ID=Physo130129.1;Parent=Physo130129;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 295193 296548 . - . ID=Physo108450;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100009;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 295193 296548 . - . ID=Physo108450;Parent=Physo108450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 295193 296548 . - 0 ID=Physo108450;Parent=Physo108450;rank=1 scaffold_10 . exon 295193 296548 . - . ID=Physo108450.1;Parent=Physo108450;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 290054 291028 . + . ID=Physo130130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100088;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 290054 291028 . + . ID=Physo130130;Parent=Physo130130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 290054 290071 . + 0 ID=Physo130130;Parent=Physo130130;rank=1 scaffold_10 . exon 290054 290071 . + . ID=Physo130130.1;Parent=Physo130130;constitutive=1;rank=1 scaffold_10 . CDS 290166 290278 . + 0 ID=Physo130130;Parent=Physo130130;rank=2 scaffold_10 . exon 290166 290278 . + . ID=Physo130130.2;Parent=Physo130130;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 290371 290698 . + 0 ID=Physo130130;Parent=Physo130130;rank=3 scaffold_10 . exon 290371 290698 . + . ID=Physo130130.3;Parent=Physo130130;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 290766 290859 . + 0 ID=Physo130130;Parent=Physo130130;rank=4 scaffold_10 . exon 290766 290859 . + . ID=Physo130130.4;Parent=Physo130130;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 290934 291028 . + 0 ID=Physo130130;Parent=Physo130130;rank=5 scaffold_10 . exon 290934 291028 . + . ID=Physo130130.5;Parent=Physo130130;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 ensembl protein_coding_gene 291602 292879 . - . ID=Physo130131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100089;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 291602 292879 . - . ID=Physo130131;Parent=Physo130131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 291602 292879 . - 0 ID=Physo130131;Parent=Physo130131;rank=1 scaffold_10 . exon 291602 292879 . - . ID=Physo130131.1;Parent=Physo130131;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 293342 295030 . + . ID=Physo130132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100090;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 293342 295030 . + . ID=Physo130132;Parent=Physo130132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 293342 293784 . + 0 ID=Physo130132;Parent=Physo130132;rank=1 scaffold_10 . exon 293342 293784 . + . ID=Physo130132.1;Parent=Physo130132;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 293871 293980 . + 0 ID=Physo130132;Parent=Physo130132;rank=2 scaffold_10 . exon 293871 293980 . + . ID=Physo130132.2;Parent=Physo130132;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 294057 295030 . + 0 ID=Physo130132;Parent=Physo130132;rank=3 scaffold_10 . exon 294057 295030 . + . ID=Physo130132.3;Parent=Physo130132;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 ensembl protein_coding_gene 296712 300223 . - . ID=Physo130134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100092;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 296712 300223 . - . ID=Physo130134;Parent=Physo130134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 296712 296784 . - 0 ID=Physo130134;Parent=Physo130134;rank=4 scaffold_10 . exon 296712 296784 . - . ID=Physo130134.4;Parent=Physo130134;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 296858 296998 . - 0 ID=Physo130134;Parent=Physo130134;rank=3 scaffold_10 . exon 296858 296998 . - . ID=Physo130134.3;Parent=Physo130134;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 297069 297313 . - 0 ID=Physo130134;Parent=Physo130134;rank=2 scaffold_10 . exon 297069 297313 . - . ID=Physo130134.2;Parent=Physo130134;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 297377 300223 . - 0 ID=Physo130134;Parent=Physo130134;rank=1 scaffold_10 . exon 297377 300223 . - . ID=Physo130134.1;Parent=Physo130134;constitutive=1;rank=1 scaffold_10 . repeat_region 300145 300206 . ? . description=dust scaffold_10 . biological_region 300185 300193 0.999 - . logic_name=eponine scaffold_10 . biological_region 300207 300209 0.999 - . logic_name=eponine scaffold_10 . biological_region 301368 301371 0.999 - . logic_name=eponine scaffold_10 . biological_region 304018 304022 0.999 + . logic_name=eponine scaffold_10 . biological_region 304043 304046 0.999 - . logic_name=eponine scaffold_10 . repeat_region 305279 305286 . ? . description=dust scaffold_10 . biological_region 305371 305378 0.999 + . logic_name=eponine scaffold_10 . biological_region 308940 308944 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 300768 302888 . - . ID=Physo108451;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100010;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 300768 302888 . - . ID=Physo108451;Parent=Physo108451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 300768 300923 . - 0 ID=Physo108451;Parent=Physo108451;rank=11 scaffold_10 . exon 300768 300923 . - . ID=Physo108451.11;Parent=Physo108451;constitutive=1;rank=11 scaffold_10 . CDS 300995 301066 . - 0 ID=Physo108451;Parent=Physo108451;rank=10 scaffold_10 . exon 300995 301066 . - . ID=Physo108451.10;Parent=Physo108451;constitutive=1;rank=10 scaffold_10 . CDS 301132 301413 . - 0 ID=Physo108451;Parent=Physo108451;rank=9 scaffold_10 . exon 301132 301413 . - . ID=Physo108451.9;Parent=Physo108451;constitutive=1;rank=9 scaffold_10 . CDS 301478 301570 . - 0 ID=Physo108451;Parent=Physo108451;rank=8 scaffold_10 . exon 301478 301570 . - . ID=Physo108451.8;Parent=Physo108451;constitutive=1;rank=8 scaffold_10 . CDS 301639 301812 . - 0 ID=Physo108451;Parent=Physo108451;rank=7 scaffold_10 . exon 301639 301812 . - . ID=Physo108451.7;Parent=Physo108451;constitutive=1;rank=7 scaffold_10 . CDS 301895 301981 . - 0 ID=Physo108451;Parent=Physo108451;rank=6 scaffold_10 . exon 301895 301981 . - . ID=Physo108451.6;Parent=Physo108451;constitutive=1;rank=6 scaffold_10 . CDS 302047 302118 . - 0 ID=Physo108451;Parent=Physo108451;rank=5 scaffold_10 . exon 302047 302118 . - . ID=Physo108451.5;Parent=Physo108451;constitutive=1;rank=5 scaffold_10 . CDS 302183 302244 . - 0 ID=Physo108451;Parent=Physo108451;rank=4 scaffold_10 . exon 302183 302244 . - . ID=Physo108451.4;Parent=Physo108451;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 302324 302480 . - 0 ID=Physo108451;Parent=Physo108451;rank=3 scaffold_10 . exon 302324 302480 . - . ID=Physo108451.3;Parent=Physo108451;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 302546 302687 . - 0 ID=Physo108451;Parent=Physo108451;rank=2 scaffold_10 . exon 302546 302687 . - . ID=Physo108451.2;Parent=Physo108451;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 302758 302888 . - 0 ID=Physo108451;Parent=Physo108451;rank=1 scaffold_10 . exon 302758 302888 . - . ID=Physo108451.1;Parent=Physo108451;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 303441 305968 . + . ID=Physo108452;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100011;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 303441 305968 . + . ID=Physo108452;Parent=Physo108452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 303441 303965 . + . ID=Physo108452.1;Parent=Physo108452;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_10 . CDS 303898 303965 . + 0 ID=Physo108452;Parent=Physo108452;rank=1 scaffold_10 . CDS 304008 304128 . + 0 ID=Physo108452;Parent=Physo108452;rank=2 scaffold_10 . exon 304008 304128 . + . ID=Physo108452.2;Parent=Physo108452;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 304168 304210 . + 0 ID=Physo108452;Parent=Physo108452;rank=3 scaffold_10 . exon 304168 304210 . + . ID=Physo108452.3;Parent=Physo108452;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 304234 304371 . + 0 ID=Physo108452;Parent=Physo108452;rank=4 scaffold_10 . exon 304234 304371 . + . ID=Physo108452.4;Parent=Physo108452;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 304439 304500 . + 0 ID=Physo108452;Parent=Physo108452;rank=5 scaffold_10 . exon 304439 304500 . + . ID=Physo108452.5;Parent=Physo108452;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 304591 304662 . + 0 ID=Physo108452;Parent=Physo108452;rank=6 scaffold_10 . exon 304591 304662 . + . ID=Physo108452.6;Parent=Physo108452;constitutive=1;rank=6 scaffold_10 . CDS 304740 304826 . + 0 ID=Physo108452;Parent=Physo108452;rank=7 scaffold_10 . exon 304740 304826 . + . ID=Physo108452.7;Parent=Physo108452;constitutive=1;rank=7 scaffold_10 . CDS 304905 305078 . + 0 ID=Physo108452;Parent=Physo108452;rank=8 scaffold_10 . exon 304905 305078 . + . ID=Physo108452.8;Parent=Physo108452;constitutive=1;rank=8 scaffold_10 . CDS 305152 305244 . + 0 ID=Physo108452;Parent=Physo108452;rank=9 scaffold_10 . exon 305152 305244 . + . ID=Physo108452.9;Parent=Physo108452;constitutive=1;rank=9 scaffold_10 . CDS 305314 305595 . + 0 ID=Physo108452;Parent=Physo108452;rank=10 scaffold_10 . exon 305314 305595 . + . ID=Physo108452.10;Parent=Physo108452;constitutive=1;rank=10 scaffold_10 . CDS 305663 305734 . + 0 ID=Physo108452;Parent=Physo108452;rank=11 scaffold_10 . exon 305663 305734 . + . ID=Physo108452.11;Parent=Physo108452;constitutive=1;rank=11 scaffold_10 . CDS 305813 305968 . + 0 ID=Physo108452;Parent=Physo108452;rank=12 scaffold_10 . exon 305813 305968 . + . ID=Physo108452.12;Parent=Physo108452;constitutive=1;rank=12 scaffold_10 ensembl protein_coding_gene 306260 309144 . - . ID=Physo156025;biotype=protein_coding;external_name=C_scaffold_10000044;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 306260 309144 . - . ID=Physo156025;Parent=Physo156025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 306260 306268 . - 0 ID=Physo156025;Parent=Physo156025;rank=8 scaffold_10 . exon 306260 306268 . - . ID=Physo156025.8;Parent=Physo156025;constitutive=1;rank=8 scaffold_10 . CDS 306289 306915 . - 0 ID=Physo156025;Parent=Physo156025;rank=7 scaffold_10 . exon 306289 306915 . - . ID=Physo156025.7;Parent=Physo156025;constitutive=1;rank=7 scaffold_10 . CDS 307164 307220 . - 0 ID=Physo156025;Parent=Physo156025;rank=6 scaffold_10 . exon 307164 307220 . - . ID=Physo156025.6;Parent=Physo156025;constitutive=1;rank=6 scaffold_10 . CDS 307294 307578 . - 0 ID=Physo156025;Parent=Physo156025;rank=5 scaffold_10 . exon 307294 307578 . - . ID=Physo156025.5;Parent=Physo156025;constitutive=1;rank=5 scaffold_10 . CDS 307664 307717 . - 0 ID=Physo156025;Parent=Physo156025;rank=4 scaffold_10 . exon 307664 307717 . - . ID=Physo156025.4;Parent=Physo156025;constitutive=1;rank=4 scaffold_10 . CDS 307783 308509 . - 0 ID=Physo156025;Parent=Physo156025;rank=3 scaffold_10 . exon 307783 308509 . - . ID=Physo156025.3;Parent=Physo156025;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 308587 308675 . - 0 ID=Physo156025;Parent=Physo156025;rank=2 scaffold_10 . exon 308587 308675 . - . ID=Physo156025.2;Parent=Physo156025;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 308761 309144 . - 0 ID=Physo156025;Parent=Physo156025;rank=1 scaffold_10 . exon 308761 309144 . - . ID=Physo156025.1;Parent=Physo156025;constitutive=1;rank=1 scaffold_10 . repeat_region 311189 311216 . ? . description=trf scaffold_10 . repeat_region 314326 314374 . ? . description=trf scaffold_10 ensembl protein_coding_gene 310827 312996 . + . ID=Physo108453;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100012;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 310827 312996 . + . ID=Physo108453;Parent=Physo108453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 310827 311177 . + 0 ID=Physo108453;Parent=Physo108453;rank=1 scaffold_10 . exon 310827 311177 . + . ID=Physo108453.1;Parent=Physo108453;constitutive=1;rank=1 scaffold_10 . CDS 311260 311436 . + 0 ID=Physo108453;Parent=Physo108453;rank=2 scaffold_10 . exon 311260 311436 . + . ID=Physo108453.2;Parent=Physo108453;constitutive=1;rank=2 scaffold_10 . CDS 311518 312834 . + 0 ID=Physo108453;Parent=Physo108453;rank=3 scaffold_10 . exon 311518 312996 . + . ID=Physo108453.3;Parent=Physo108453;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_10 ensembl protein_coding_gene 309438 310205 . + . ID=Physo130138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100096;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 309438 310205 . + . ID=Physo130138;Parent=Physo130138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 309438 309835 . + 0 ID=Physo130138;Parent=Physo130138;rank=1 scaffold_10 . exon 309438 309835 . + . ID=Physo130138.1;Parent=Physo130138;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 310007 310205 . + 0 ID=Physo130138;Parent=Physo130138;rank=2 scaffold_10 . exon 310007 310205 . + . ID=Physo130138.2;Parent=Physo130138;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 ensembl protein_coding_gene 313251 313891 . + . ID=Physo130140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100098;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 313251 313891 . + . ID=Physo130140;Parent=Physo130140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 313251 313342 . + 0 ID=Physo130140;Parent=Physo130140;rank=1 scaffold_10 . exon 313251 313342 . + . ID=Physo130140.1;Parent=Physo130140;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 313414 313891 . + 0 ID=Physo130140;Parent=Physo130140;rank=2 scaffold_10 . exon 313414 313891 . + . ID=Physo130140.2;Parent=Physo130140;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 ensembl protein_coding_gene 313961 317171 . - . ID=Physo156028;biotype=protein_coding;external_name=C_scaffold_10000047;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 313961 317171 . - . ID=Physo156028;Parent=Physo156028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 313961 315331 . - 0 ID=Physo156028;Parent=Physo156028;rank=5 scaffold_10 . exon 313961 315331 . - . ID=Physo156028.5;Parent=Physo156028;constitutive=1;rank=5 scaffold_10 . CDS 315406 315584 . - 0 ID=Physo156028;Parent=Physo156028;rank=4 scaffold_10 . exon 315406 315584 . - . ID=Physo156028.4;Parent=Physo156028;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 316548 316661 . - 0 ID=Physo156028;Parent=Physo156028;rank=3 scaffold_10 . exon 316548 316661 . - . ID=Physo156028.3;Parent=Physo156028;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 316840 316858 . - 0 ID=Physo156028;Parent=Physo156028;rank=2 scaffold_10 . exon 316840 316858 . - . ID=Physo156028.2;Parent=Physo156028;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 316969 317169 . - 0 ID=Physo156028;Parent=Physo156028;rank=1 scaffold_10 . exon 316969 317171 . - . ID=Physo156028.1;Parent=Physo156028;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 317420 320614 . + . ID=Physo156029;biotype=protein_coding;external_name=C_scaffold_10000048;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 317420 320614 . + . ID=Physo156029;Parent=Physo156029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 317420 317475 . + 0 ID=Physo156029;Parent=Physo156029;rank=1 scaffold_10 . exon 317420 317475 . + . ID=Physo156029.1;Parent=Physo156029;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 317565 317613 . + 0 ID=Physo156029;Parent=Physo156029;rank=2 scaffold_10 . exon 317565 317613 . + . ID=Physo156029.2;Parent=Physo156029;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 317956 318353 . + 0 ID=Physo156029;Parent=Physo156029;rank=3 scaffold_10 . exon 317956 318353 . + . ID=Physo156029.3;Parent=Physo156029;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 318636 318804 . + 0 ID=Physo156029;Parent=Physo156029;rank=4 scaffold_10 . exon 318636 318804 . + . ID=Physo156029.4;Parent=Physo156029;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 318871 319003 . + 0 ID=Physo156029;Parent=Physo156029;rank=5 scaffold_10 . exon 318871 319003 . + . ID=Physo156029.5;Parent=Physo156029;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 319073 319698 . + 0 ID=Physo156029;Parent=Physo156029;rank=6 scaffold_10 . exon 319073 319698 . + . ID=Physo156029.6;Parent=Physo156029;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 319761 319894 . + 0 ID=Physo156029;Parent=Physo156029;rank=7 scaffold_10 . CDS 319959 320072 . + 0 ID=Physo156029;Parent=Physo156029;rank=8 scaffold_10 . CDS 320140 320614 . + 0 ID=Physo156029;Parent=Physo156029;rank=9 scaffold_10 . biological_region 321147 321149 0.999 + . logic_name=eponine scaffold_10 . biological_region 321155 321156 0.999 - . logic_name=eponine scaffold_10 . biological_region 324154 324162 0.999 + . logic_name=eponine scaffold_10 . biological_region 324170 324176 0.999 + . logic_name=eponine scaffold_10 . biological_region 324185 324189 0.999 + . logic_name=eponine scaffold_10 . biological_region 324312 324317 0.999 - . logic_name=eponine scaffold_10 . biological_region 327096 327099 0.999 + . logic_name=eponine scaffold_10 . biological_region 327125 327132 0.999 - . logic_name=eponine scaffold_10 . biological_region 327184 327188 0.999 + . logic_name=eponine scaffold_10 . biological_region 327203 327203 0.999 + . logic_name=eponine scaffold_10 . biological_region 327268 327269 0.999 - . logic_name=eponine scaffold_10 . biological_region 327551 327551 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 321598 324301 . - . ID=Physo130143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100101;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 321598 324301 . - . ID=Physo130143;Parent=Physo130143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 321598 322102 . - . ID=Physo130143.10;Parent=Physo130143;constitutive=1;ensembl_end_phase=-1;rank=10 scaffold_10 . CDS 321818 322102 . - 0 ID=Physo130143;Parent=Physo130143;rank=10 scaffold_10 . CDS 322182 322364 . - 0 ID=Physo130143;Parent=Physo130143;rank=9 scaffold_10 . exon 322182 322364 . - . ID=Physo130143.9;Parent=Physo130143;constitutive=1;rank=9 scaffold_10 . CDS 322435 322537 . - 0 ID=Physo130143;Parent=Physo130143;rank=8 scaffold_10 . exon 322435 322537 . - . ID=Physo130143.8;Parent=Physo130143;constitutive=1;ensembl_phase=2;rank=8 scaffold_10 . CDS 322612 322706 . - 0 ID=Physo130143;Parent=Physo130143;rank=7 scaffold_10 . exon 322612 322706 . - . ID=Physo130143.7;Parent=Physo130143;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_10 . CDS 322777 323235 . - 0 ID=Physo130143;Parent=Physo130143;rank=6 scaffold_10 . exon 322777 323235 . - . ID=Physo130143.6;Parent=Physo130143;constitutive=1;rank=6 scaffold_10 . CDS 323318 323414 . - 0 ID=Physo130143;Parent=Physo130143;rank=5 scaffold_10 . exon 323318 323414 . - . ID=Physo130143.5;Parent=Physo130143;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 323486 323639 . - 0 ID=Physo130143;Parent=Physo130143;rank=4 scaffold_10 . exon 323486 323639 . - . ID=Physo130143.4;Parent=Physo130143;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_10 . CDS 323718 323773 . - 0 ID=Physo130143;Parent=Physo130143;rank=3 scaffold_10 . exon 323718 323773 . - . ID=Physo130143.3;Parent=Physo130143;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 323850 323996 . - 0 ID=Physo130143;Parent=Physo130143;rank=2 scaffold_10 . exon 323850 323996 . - . ID=Physo130143.2;Parent=Physo130143;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . CDS 324102 324301 . - 0 ID=Physo130143;Parent=Physo130143;rank=1 scaffold_10 . exon 324102 324301 . - . ID=Physo130143.1;Parent=Physo130143;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . exon 319761 319894 . + . ID=Physo156029.7;Parent=Physo156029;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_10 . exon 319959 320072 . + . ID=Physo156029.8;Parent=Physo156029;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_10 . exon 320140 320614 . + . ID=Physo156029.9;Parent=Physo156029;constitutive=1;ensembl_phase=2;rank=9 scaffold_10 ensembl protein_coding_gene 324647 326053 . + . ID=Physo156032;biotype=protein_coding;external_name=C_scaffold_10000051;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 324647 326053 . + . ID=Physo156032;Parent=Physo156032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 324647 324709 . + 0 ID=Physo156032;Parent=Physo156032;rank=1 scaffold_10 . exon 324647 324709 . + . ID=Physo156032.1;Parent=Physo156032;constitutive=1;rank=1 scaffold_10 . CDS 324780 324839 . + 0 ID=Physo156032;Parent=Physo156032;rank=2 scaffold_10 . exon 324780 324839 . + . ID=Physo156032.2;Parent=Physo156032;constitutive=1;rank=2 scaffold_10 . CDS 324909 325049 . + 0 ID=Physo156032;Parent=Physo156032;rank=3 scaffold_10 . exon 324909 325049 . + . ID=Physo156032.3;Parent=Physo156032;constitutive=1;rank=3 scaffold_10 . CDS 325124 325175 . + 0 ID=Physo156032;Parent=Physo156032;rank=4 scaffold_10 . exon 325124 325175 . + . ID=Physo156032.4;Parent=Physo156032;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 325252 325298 . + 0 ID=Physo156032;Parent=Physo156032;rank=5 scaffold_10 . exon 325252 325298 . + . ID=Physo156032.5;Parent=Physo156032;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 325374 325556 . + 0 ID=Physo156032;Parent=Physo156032;rank=6 scaffold_10 . exon 325374 325556 . + . ID=Physo156032.6;Parent=Physo156032;constitutive=1;rank=6 scaffold_10 . CDS 325623 325932 . + 0 ID=Physo156032;Parent=Physo156032;rank=7 scaffold_10 . exon 325623 325932 . + . ID=Physo156032.7;Parent=Physo156032;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_10 . CDS 325953 326053 . + 0 ID=Physo156032;Parent=Physo156032;rank=8 scaffold_10 . exon 325953 326053 . + . ID=Physo156032.8;Parent=Physo156032;constitutive=1;ensembl_phase=1;rank=8 scaffold_10 ensembl protein_coding_gene 326116 330043 . - . ID=Physo156035;biotype=protein_coding;external_name=C_scaffold_10000054;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 326116 330043 . - . ID=Physo156035;Parent=Physo156035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 326116 326350 . - 0 ID=Physo156035;Parent=Physo156035;rank=9 scaffold_10 . exon 326116 326350 . - . ID=Physo156035.9;Parent=Physo156035;constitutive=1;ensembl_phase=2;rank=9 scaffold_10 . CDS 326420 327632 . - 0 ID=Physo156035;Parent=Physo156035;rank=8 scaffold_10 . exon 326420 327632 . - . ID=Physo156035.8;Parent=Physo156035;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_10 . CDS 327796 328146 . - 0 ID=Physo156035;Parent=Physo156035;rank=7 scaffold_10 . exon 327796 328146 . - . ID=Physo156035.7;Parent=Physo156035;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_10 . CDS 328212 328248 . - 0 ID=Physo156035;Parent=Physo156035;rank=6 scaffold_10 . exon 328212 328248 . - . ID=Physo156035.6;Parent=Physo156035;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_10 . CDS 328329 328473 . - 0 ID=Physo156035;Parent=Physo156035;rank=5 scaffold_10 . exon 328329 328473 . - . ID=Physo156035.5;Parent=Physo156035;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 328521 328669 . - 0 ID=Physo156035;Parent=Physo156035;rank=4 scaffold_10 . exon 328521 328669 . - . ID=Physo156035.4;Parent=Physo156035;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 328785 328879 . - 0 ID=Physo156035;Parent=Physo156035;rank=3 scaffold_10 . exon 328785 328879 . - . ID=Physo156035.3;Parent=Physo156035;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 329514 329742 . - 0 ID=Physo156035;Parent=Physo156035;rank=2 scaffold_10 . CDS 329828 330043 . - 0 ID=Physo156035;Parent=Physo156035;rank=1 scaffold_10 . repeat_region 338806 338848 . ? . description=trf scaffold_10 ensembl protein_coding_gene 333074 333912 . + . ID=Physo130147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100105;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 333074 333912 . + . ID=Physo130147;Parent=Physo130147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 333074 333545 . + . ID=Physo130147.1;Parent=Physo130147;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 333150 333545 . + 0 ID=Physo130147;Parent=Physo130147;rank=1 scaffold_10 . CDS 333628 333786 . + 0 ID=Physo130147;Parent=Physo130147;rank=2 scaffold_10 . exon 333628 333912 . + . ID=Physo130147.2;Parent=Physo130147;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_10 . exon 329514 329742 . - . ID=Physo156035.2;Parent=Physo156035;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . exon 329828 330043 . - . ID=Physo156035.1;Parent=Physo156035;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 330142 330792 . + . ID=Physo156036;biotype=protein_coding;external_name=C_scaffold_10000055;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 330142 330792 . + . ID=Physo156036;Parent=Physo156036;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 330142 330792 . + 0 ID=Physo156036;Parent=Physo156036;rank=1 scaffold_10 . exon 330142 330792 . + . ID=Physo156036.1;Parent=Physo156036;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 334544 338399 . + . ID=Physo156038;biotype=protein_coding;external_name=C_scaffold_10000057;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 334544 338399 . + . ID=Physo156038;Parent=Physo156038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 334544 335111 . + 0 ID=Physo156038;Parent=Physo156038;rank=1 scaffold_10 . exon 334544 335111 . + . ID=Physo156038.1;Parent=Physo156038;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 335228 335378 . + 0 ID=Physo156038;Parent=Physo156038;rank=2 scaffold_10 . exon 335228 335378 . + . ID=Physo156038.2;Parent=Physo156038;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 335471 335577 . + 0 ID=Physo156038;Parent=Physo156038;rank=3 scaffold_10 . exon 335471 335577 . + . ID=Physo156038.3;Parent=Physo156038;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 335661 335748 . + 0 ID=Physo156038;Parent=Physo156038;rank=4 scaffold_10 . exon 335661 335748 . + . ID=Physo156038.4;Parent=Physo156038;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_10 . CDS 335770 335987 . + 0 ID=Physo156038;Parent=Physo156038;rank=5 scaffold_10 . exon 335770 335987 . + . ID=Physo156038.5;Parent=Physo156038;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 336277 336452 . + 0 ID=Physo156038;Parent=Physo156038;rank=6 scaffold_10 . exon 336277 336452 . + . ID=Physo156038.6;Parent=Physo156038;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 336504 336619 . + 0 ID=Physo156038;Parent=Physo156038;rank=7 scaffold_10 . exon 336504 336619 . + . ID=Physo156038.7;Parent=Physo156038;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_10 . CDS 336755 336845 . + 0 ID=Physo156038;Parent=Physo156038;rank=8 scaffold_10 . exon 336755 336845 . + . ID=Physo156038.8;Parent=Physo156038;constitutive=1;ensembl_phase=2;rank=8 scaffold_10 . CDS 336885 337153 . + 0 ID=Physo156038;Parent=Physo156038;rank=9 scaffold_10 . exon 336885 337153 . + . ID=Physo156038.9;Parent=Physo156038;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_10 . CDS 337178 337607 . + 0 ID=Physo156038;Parent=Physo156038;rank=10 scaffold_10 . exon 337178 337607 . + . ID=Physo156038.10;Parent=Physo156038;constitutive=1;ensembl_phase=2;rank=10 scaffold_10 . CDS 337629 338031 . + 0 ID=Physo156038;Parent=Physo156038;rank=11 scaffold_10 . exon 337629 338031 . + . ID=Physo156038.11;Parent=Physo156038;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_10 . CDS 338056 338399 . + 0 ID=Physo156038;Parent=Physo156038;rank=12 scaffold_10 . exon 338056 338399 . + . ID=Physo156038.12;Parent=Physo156038;constitutive=1;ensembl_phase=1;rank=12 scaffold_10 ensembl protein_coding_gene 339809 340515 . - . ID=Physo130149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100107;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 339809 340515 . - . ID=Physo130149;Parent=Physo130149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 339809 339866 . - 0 ID=Physo130149;Parent=Physo130149;rank=5 scaffold_10 . exon 339809 339866 . - . ID=Physo130149.5;Parent=Physo130149;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 339886 340064 . - 0 ID=Physo130149;Parent=Physo130149;rank=4 scaffold_10 . exon 339886 340064 . - . ID=Physo130149.4;Parent=Physo130149;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 340084 340195 . - 0 ID=Physo130149;Parent=Physo130149;rank=3 scaffold_10 . exon 340084 340195 . - . ID=Physo130149.3;Parent=Physo130149;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 340421 340455 . - 0 ID=Physo130149;Parent=Physo130149;rank=2 scaffold_10 . exon 340421 340455 . - . ID=Physo130149.2;Parent=Physo130149;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 340498 340515 . - 0 ID=Physo130149;Parent=Physo130149;rank=1 scaffold_10 . exon 340498 340515 . - . ID=Physo130149.1;Parent=Physo130149;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 345223 351090 . + . ID=Physo130150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100108;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 345223 351090 . + . ID=Physo130150;Parent=Physo130150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 345223 345648 . + 0 ID=Physo130150;Parent=Physo130150;rank=1 scaffold_10 . exon 345223 345648 . + . ID=Physo130150.1;Parent=Physo130150;constitutive=1;rank=1 scaffold_10 . CDS 346019 346080 . + 0 ID=Physo130150;Parent=Physo130150;rank=2 scaffold_10 . exon 346019 346080 . + . ID=Physo130150.2;Parent=Physo130150;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 346134 346833 . + 0 ID=Physo130150;Parent=Physo130150;rank=3 scaffold_10 . exon 346134 346833 . + . ID=Physo130150.3;Parent=Physo130150;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 346934 348582 . + 0 ID=Physo130150;Parent=Physo130150;rank=4 scaffold_10 . exon 346934 348582 . + . ID=Physo130150.4;Parent=Physo130150;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 348611 349104 . + 0 ID=Physo130150;Parent=Physo130150;rank=5 scaffold_10 . exon 348611 349104 . + . ID=Physo130150.5;Parent=Physo130150;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 349137 349315 . + 0 ID=Physo130150;Parent=Physo130150;rank=6 scaffold_10 . CDS 349382 349798 . + 0 ID=Physo130150;Parent=Physo130150;rank=7 scaffold_10 . CDS 349904 349959 . + 0 ID=Physo130150;Parent=Physo130150;rank=8 scaffold_10 . CDS 350054 350886 . + 0 ID=Physo130150;Parent=Physo130150;rank=9 scaffold_10 . CDS 351017 351090 . + 0 ID=Physo130150;Parent=Physo130150;rank=10 scaffold_10 . biological_region 354878 354879 0.999 - . logic_name=eponine scaffold_10 . repeat_region 355205 355284 . ? . description=dust scaffold_10 . repeat_region 355232 355284 . ? . description=trf scaffold_10 . repeat_region 355420 355764 . ? . description=dust scaffold_10 . repeat_region 357771 357895 . ? . description=dust scaffold_10 . biological_region 358475 358476 0.999 - . logic_name=eponine scaffold_10 . repeat_region 358789 358881 . ? . description=dust scaffold_10 . repeat_region 358829 358881 . ? . description=trf scaffold_10 ensembl protein_coding_gene 353017 353418 . - . ID=Physo112588;biotype=protein_coding;external_name=estExt_Genewise1.C_100034;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 353017 353418 . - . ID=Physo112588;Parent=Physo112588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 353017 353403 . - 0 ID=Physo112588;Parent=Physo112588;rank=1 scaffold_10 . exon 353017 353418 . - . ID=Physo112588.1;Parent=Physo112588;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . exon 349137 349315 . + . ID=Physo130150.6;Parent=Physo130150;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 . exon 349382 349798 . + . ID=Physo130150.7;Parent=Physo130150;constitutive=1;rank=7 scaffold_10 . exon 349904 349959 . + . ID=Physo130150.8;Parent=Physo130150;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_10 . exon 350054 350886 . + . ID=Physo130150.9;Parent=Physo130150;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_10 . exon 351017 351090 . + . ID=Physo130150.10;Parent=Physo130150;constitutive=1;ensembl_phase=1;rank=10 scaffold_10 ensembl protein_coding_gene 359830 363890 . + . ID=Physo130151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100109;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 359830 363890 . + . ID=Physo130151;Parent=Physo130151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 359830 359834 . + 0 ID=Physo130151;Parent=Physo130151;rank=1 scaffold_10 . exon 359830 359834 . + . ID=Physo130151.1;Parent=Physo130151;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 359860 360493 . + 0 ID=Physo130151;Parent=Physo130151;rank=2 scaffold_10 . exon 359860 360493 . + . ID=Physo130151.2;Parent=Physo130151;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 360562 360779 . + 0 ID=Physo130151;Parent=Physo130151;rank=3 scaffold_10 . exon 360562 360779 . + . ID=Physo130151.3;Parent=Physo130151;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 360903 361349 . + 0 ID=Physo130151;Parent=Physo130151;rank=4 scaffold_10 . exon 360903 361349 . + . ID=Physo130151.4;Parent=Physo130151;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_10 . CDS 361467 362424 . + 0 ID=Physo130151;Parent=Physo130151;rank=5 scaffold_10 . exon 361467 362424 . + . ID=Physo130151.5;Parent=Physo130151;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 362469 362487 . + 0 ID=Physo130151;Parent=Physo130151;rank=6 scaffold_10 . exon 362469 362487 . + . ID=Physo130151.6;Parent=Physo130151;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_10 . CDS 362513 362946 . + 0 ID=Physo130151;Parent=Physo130151;rank=7 scaffold_10 . exon 362513 362946 . + . ID=Physo130151.7;Parent=Physo130151;constitutive=1;ensembl_phase=1;rank=7 scaffold_10 . CDS 362998 363427 . + 0 ID=Physo130151;Parent=Physo130151;rank=8 scaffold_10 . exon 362998 363427 . + . ID=Physo130151.8;Parent=Physo130151;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_10 . CDS 363751 363890 . + 0 ID=Physo130151;Parent=Physo130151;rank=9 scaffold_10 . exon 363751 363890 . + . ID=Physo130151.9;Parent=Physo130151;constitutive=1;ensembl_phase=1;rank=9 scaffold_10 ensembl protein_coding_gene 365072 366415 . + . ID=Physo130152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100110;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 365072 366415 . + . ID=Physo130152;Parent=Physo130152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 365072 366415 . + 0 ID=Physo130152;Parent=Physo130152;rank=1 scaffold_10 . exon 365072 366415 . + . ID=Physo130152.1;Parent=Physo130152;constitutive=1;rank=1 scaffold_10 . biological_region 369237 369239 0.999 + . logic_name=eponine scaffold_10 . biological_region 369608 369608 0.999 - . logic_name=eponine scaffold_10 . biological_region 369688 369691 0.999 + . logic_name=eponine scaffold_10 . biological_region 369781 369785 0.999 + . logic_name=eponine scaffold_10 . repeat_region 371297 371341 . ? . description=trf scaffold_10 . repeat_region 374093 374142 . ? . description=dust scaffold_10 . repeat_region 374965 375397 . ? . description=dust scaffold_10 . repeat_region 376493 381615 . ? . description=dust scaffold_10 ensembl protein_coding_gene 369182 372112 . + . ID=Physo130153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100111;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 369182 372112 . + . ID=Physo130153;Parent=Physo130153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 369182 370230 . + 0 ID=Physo130153;Parent=Physo130153;rank=1 scaffold_10 . exon 369182 370230 . + . ID=Physo130153.1;Parent=Physo130153;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 370268 370677 . + 0 ID=Physo130153;Parent=Physo130153;rank=2 scaffold_10 . exon 370268 370677 . + . ID=Physo130153.2;Parent=Physo130153;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 370788 372112 . + 0 ID=Physo130153;Parent=Physo130153;rank=3 scaffold_10 . exon 370788 372112 . + . ID=Physo130153.3;Parent=Physo130153;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . repeat_region 381616 390051 . ? . description=dust scaffold_10 . biological_region 394101 394104 0.999 + . logic_name=eponine scaffold_10 . biological_region 394688 394691 0.999 - . logic_name=eponine scaffold_10 . biological_region 395437 395439 0.999 - . logic_name=eponine scaffold_10 . biological_region 395543 395544 0.999 + . logic_name=eponine scaffold_10 . biological_region 395588 395593 0.999 - . logic_name=eponine scaffold_10 . biological_region 395631 395632 0.999 - . logic_name=eponine scaffold_10 . biological_region 395695 395698 0.999 - . logic_name=eponine scaffold_10 . biological_region 395754 395756 0.999 - . logic_name=eponine scaffold_10 . biological_region 395807 395812 0.999 + . logic_name=eponine scaffold_10 . biological_region 395939 395941 0.999 - . logic_name=eponine scaffold_10 . biological_region 395963 395964 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 391345 393270 . - . ID=Physo130154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100112;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 391345 393270 . - . ID=Physo130154;Parent=Physo130154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 391345 391385 . - 0 ID=Physo130154;Parent=Physo130154;rank=3 scaffold_10 . exon 391345 391385 . - . ID=Physo130154.3;Parent=Physo130154;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 391462 392826 . - 0 ID=Physo130154;Parent=Physo130154;rank=2 scaffold_10 . exon 391462 392826 . - . ID=Physo130154.2;Parent=Physo130154;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 392904 393270 . - 0 ID=Physo130154;Parent=Physo130154;rank=1 scaffold_10 . exon 392904 393270 . - . ID=Physo130154.1;Parent=Physo130154;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 393887 395671 . - . ID=Physo130155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100113;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 393887 395671 . - . ID=Physo130155;Parent=Physo130155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 393887 395671 . - 0 ID=Physo130155;Parent=Physo130155;rank=1 scaffold_10 . exon 393887 395671 . - . ID=Physo130155.1;Parent=Physo130155;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 398236 399156 . - . ID=Physo130156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100114;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 398236 399156 . - . ID=Physo130156;Parent=Physo130156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 398236 398496 . - 0 ID=Physo130156;Parent=Physo130156;rank=2 scaffold_10 . exon 398236 398496 . - . ID=Physo130156.2;Parent=Physo130156;constitutive=1;rank=2 scaffold_10 . CDS 398869 399156 . - 0 ID=Physo130156;Parent=Physo130156;rank=1 scaffold_10 . exon 398869 399156 . - . ID=Physo130156.1;Parent=Physo130156;constitutive=1;rank=1 scaffold_10 . repeat_region 405836 405878 . ? . description=trf scaffold_10 . repeat_region 407877 407906 . ? . description=trf scaffold_10 ensembl protein_coding_gene 407044 407304 . - . ID=Physo112594;biotype=protein_coding;external_name=estExt_Genewise1.C_100040;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 407044 407304 . - . ID=Physo112594;Parent=Physo112594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 407044 407163 . - 0 ID=Physo112594;Parent=Physo112594;rank=1 scaffold_10 . exon 407044 407304 . - . ID=Physo112594.1;Parent=Physo112594;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 404894 405493 . - . ID=Physo130157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100115;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 404894 405493 . - . ID=Physo130157;Parent=Physo130157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 404894 405037 . - 0 ID=Physo130157;Parent=Physo130157;rank=2 scaffold_10 . exon 404894 405037 . - . ID=Physo130157.2;Parent=Physo130157;constitutive=1;rank=2 scaffold_10 . CDS 405077 405493 . - 0 ID=Physo130157;Parent=Physo130157;rank=1 scaffold_10 . exon 405077 405493 . - . ID=Physo130157.1;Parent=Physo130157;constitutive=1;rank=1 scaffold_10 . repeat_region 409487 409503 . ? . description=dust scaffold_10 . biological_region 410814 410816 0.999 + . logic_name=eponine scaffold_10 . biological_region 411287 411289 0.999 + . logic_name=eponine scaffold_10 . biological_region 411380 411382 0.999 + . logic_name=eponine scaffold_10 . repeat_region 412604 412653 . ? . description=dust scaffold_10 . biological_region 413859 413861 0.999 + . logic_name=eponine scaffold_10 . biological_region 414331 414334 0.999 + . logic_name=eponine scaffold_10 . biological_region 414424 414428 0.999 + . logic_name=eponine scaffold_10 . repeat_region 415787 415836 . ? . description=dust scaffold_10 . repeat_region 416681 417117 . ? . description=dust scaffold_10 ensembl protein_coding_gene 410759 412588 . + . ID=Physo130158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100116;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 410759 412588 . + . ID=Physo130158;Parent=Physo130158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 410759 410797 . + 0 ID=Physo130158;Parent=Physo130158;rank=1 scaffold_10 . exon 410759 410797 . + . ID=Physo130158.1;Parent=Physo130158;constitutive=1;rank=1 scaffold_10 . CDS 410906 412353 . + 0 ID=Physo130158;Parent=Physo130158;rank=2 scaffold_10 . exon 410906 412353 . + . ID=Physo130158.2;Parent=Physo130158;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 412410 412488 . + 0 ID=Physo130158;Parent=Physo130158;rank=3 scaffold_10 . exon 412410 412488 . + . ID=Physo130158.3;Parent=Physo130158;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 412529 412588 . + 0 ID=Physo130158;Parent=Physo130158;rank=4 scaffold_10 . exon 412529 412588 . + . ID=Physo130158.4;Parent=Physo130158;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 413804 416226 . + . ID=Physo130159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100117;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 413804 416226 . + . ID=Physo130159;Parent=Physo130159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 413804 413842 . + 0 ID=Physo130159;Parent=Physo130159;rank=1 scaffold_10 . exon 413804 413842 . + . ID=Physo130159.1;Parent=Physo130159;constitutive=1;rank=1 scaffold_10 . CDS 413951 415398 . + 0 ID=Physo130159;Parent=Physo130159;rank=2 scaffold_10 . exon 413951 415398 . + . ID=Physo130159.2;Parent=Physo130159;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 415455 415753 . + 0 ID=Physo130159;Parent=Physo130159;rank=3 scaffold_10 . exon 415455 415753 . + . ID=Physo130159.3;Parent=Physo130159;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 415964 416226 . + 0 ID=Physo130159;Parent=Physo130159;rank=4 scaffold_10 . exon 415964 416226 . + . ID=Physo130159.4;Parent=Physo130159;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 ensembl protein_coding_gene 416578 421793 . - . ID=Physo130160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100118;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 416578 421793 . - . ID=Physo130160;Parent=Physo130160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 416578 416645 . - 0 ID=Physo130160;Parent=Physo130160;rank=10 scaffold_10 . exon 416578 416645 . - . ID=Physo130160.10;Parent=Physo130160;constitutive=1;ensembl_phase=1;rank=10 scaffold_10 . CDS 417225 418083 . - 0 ID=Physo130160;Parent=Physo130160;rank=9 scaffold_10 . exon 417225 418083 . - . ID=Physo130160.9;Parent=Physo130160;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_10 . CDS 418120 419300 . - 0 ID=Physo130160;Parent=Physo130160;rank=8 scaffold_10 . exon 418120 419300 . - . ID=Physo130160.8;Parent=Physo130160;constitutive=1;ensembl_phase=1;rank=8 scaffold_10 . CDS 419417 419757 . - 0 ID=Physo130160;Parent=Physo130160;rank=7 scaffold_10 . CDS 419868 420135 . - 0 ID=Physo130160;Parent=Physo130160;rank=6 scaffold_10 . CDS 420363 420470 . - 0 ID=Physo130160;Parent=Physo130160;rank=5 scaffold_10 . CDS 420569 420701 . - 0 ID=Physo130160;Parent=Physo130160;rank=4 scaffold_10 . CDS 420726 421115 . - 0 ID=Physo130160;Parent=Physo130160;rank=3 scaffold_10 . CDS 421306 421723 . - 0 ID=Physo130160;Parent=Physo130160;rank=2 scaffold_10 . CDS 421786 421793 . - 0 ID=Physo130160;Parent=Physo130160;rank=1 scaffold_10 . repeat_region 424437 424466 . ? . description=trf scaffold_10 . repeat_region 427213 427329 . ? . description=trf scaffold_10 . exon 419417 419757 . - . ID=Physo130160.7;Parent=Physo130160;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_10 . exon 419868 420135 . - . ID=Physo130160.6;Parent=Physo130160;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_10 . exon 420363 420470 . - . ID=Physo130160.5;Parent=Physo130160;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_10 . exon 420569 420701 . - . ID=Physo130160.4;Parent=Physo130160;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . exon 420726 421115 . - . ID=Physo130160.3;Parent=Physo130160;constitutive=1;rank=3 scaffold_10 . exon 421306 421723 . - . ID=Physo130160.2;Parent=Physo130160;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . exon 421786 421793 . - . ID=Physo130160.1;Parent=Physo130160;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 422251 424181 . - . ID=Physo130161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100119;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 422251 424181 . - . ID=Physo130161;Parent=Physo130161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 422251 422499 . - 0 ID=Physo130161;Parent=Physo130161;rank=5 scaffold_10 . exon 422251 422499 . - . ID=Physo130161.5;Parent=Physo130161;constitutive=1;rank=5 scaffold_10 . CDS 422542 422666 . - 0 ID=Physo130161;Parent=Physo130161;rank=4 scaffold_10 . exon 422542 422666 . - . ID=Physo130161.4;Parent=Physo130161;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 422741 422848 . - 0 ID=Physo130161;Parent=Physo130161;rank=3 scaffold_10 . exon 422741 422848 . - . ID=Physo130161.3;Parent=Physo130161;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 422947 423079 . - 0 ID=Physo130161;Parent=Physo130161;rank=2 scaffold_10 . exon 422947 423079 . - . ID=Physo130161.2;Parent=Physo130161;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 423633 424181 . - 0 ID=Physo130161;Parent=Physo130161;rank=1 scaffold_10 . exon 423633 424181 . - . ID=Physo130161.1;Parent=Physo130161;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 425208 427647 . - . ID=Physo130162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100120;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 425208 427647 . - . ID=Physo130162;Parent=Physo130162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 425208 426185 . - 0 ID=Physo130162;Parent=Physo130162;rank=3 scaffold_10 . exon 425208 426185 . - . ID=Physo130162.3;Parent=Physo130162;constitutive=1;rank=3 scaffold_10 . CDS 426593 427091 . - 0 ID=Physo130162;Parent=Physo130162;rank=2 scaffold_10 . exon 426593 427091 . - . ID=Physo130162.2;Parent=Physo130162;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 427259 427647 . - 0 ID=Physo130162;Parent=Physo130162;rank=1 scaffold_10 . exon 427259 427647 . - . ID=Physo130162.1;Parent=Physo130162;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . repeat_region 429288 429337 . ? . description=dust scaffold_10 . biological_region 435387 435389 0.999 - . logic_name=eponine scaffold_10 . biological_region 435441 435448 0.999 + . logic_name=eponine scaffold_10 . biological_region 435943 435946 0.999 - . logic_name=eponine scaffold_10 . repeat_region 437049 437056 . ? . description=dust scaffold_10 . biological_region 438694 438696 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 429473 430543 . - . ID=Physo130163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100121;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 429473 430543 . - . ID=Physo130163;Parent=Physo130163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 429473 430543 . - 0 ID=Physo130163;Parent=Physo130163;rank=1 scaffold_10 . exon 429473 430543 . - . ID=Physo130163.1;Parent=Physo130163;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 432519 434410 . - . ID=Physo130164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100122;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 432519 434410 . - . ID=Physo130164;Parent=Physo130164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 432519 433627 . - 0 ID=Physo130164;Parent=Physo130164;rank=3 scaffold_10 . exon 432519 433627 . - . ID=Physo130164.3;Parent=Physo130164;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 433648 433990 . - 0 ID=Physo130164;Parent=Physo130164;rank=2 scaffold_10 . exon 433648 433990 . - . ID=Physo130164.2;Parent=Physo130164;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 434081 434410 . - 0 ID=Physo130164;Parent=Physo130164;rank=1 scaffold_10 . exon 434081 434410 . - . ID=Physo130164.1;Parent=Physo130164;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 434789 436036 . + . ID=Physo130165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100123;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 434789 436036 . + . ID=Physo130165;Parent=Physo130165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 434789 434873 . + 0 ID=Physo130165;Parent=Physo130165;rank=1 scaffold_10 . exon 434789 434873 . + . ID=Physo130165.1;Parent=Physo130165;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 435087 435106 . + 0 ID=Physo130165;Parent=Physo130165;rank=2 scaffold_10 . exon 435087 435106 . + . ID=Physo130165.2;Parent=Physo130165;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 435252 435516 . + 0 ID=Physo130165;Parent=Physo130165;rank=3 scaffold_10 . exon 435252 435516 . + . ID=Physo130165.3;Parent=Physo130165;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 435543 435721 . + 0 ID=Physo130165;Parent=Physo130165;rank=4 scaffold_10 . exon 435543 435721 . + . ID=Physo130165.4;Parent=Physo130165;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 435767 436036 . + 0 ID=Physo130165;Parent=Physo130165;rank=5 scaffold_10 . exon 435767 436036 . + . ID=Physo130165.5;Parent=Physo130165;constitutive=1;rank=5 scaffold_10 ensembl protein_coding_gene 439572 441185 . + . ID=Physo130166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100124;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 439572 441185 . + . ID=Physo130166;Parent=Physo130166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 439572 441185 . + 0 ID=Physo130166;Parent=Physo130166;rank=1 scaffold_10 . exon 439572 441185 . + . ID=Physo130166.1;Parent=Physo130166;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 441763 443044 . - . ID=Physo130167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100125;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 441763 443044 . - . ID=Physo130167;Parent=Physo130167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 441763 441816 . - 0 ID=Physo130167;Parent=Physo130167;rank=3 scaffold_10 . exon 441763 441816 . - . ID=Physo130167.3;Parent=Physo130167;constitutive=1;rank=3 scaffold_10 . CDS 441855 442089 . - 0 ID=Physo130167;Parent=Physo130167;rank=2 scaffold_10 . exon 441855 442089 . - . ID=Physo130167.2;Parent=Physo130167;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 442158 443044 . - 0 ID=Physo130167;Parent=Physo130167;rank=1 scaffold_10 . exon 442158 443044 . - . ID=Physo130167.1;Parent=Physo130167;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 443728 445269 . - . ID=Physo130168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100126;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 443728 445269 . - . ID=Physo130168;Parent=Physo130168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 443728 445269 . - 0 ID=Physo130168;Parent=Physo130168;rank=1 scaffold_10 . exon 443728 445269 . - . ID=Physo130168.1;Parent=Physo130168;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 447142 453496 . - . ID=Physo130169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100127;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 447142 453496 . - . ID=Physo130169;Parent=Physo130169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 447142 447221 . - 0 ID=Physo130169;Parent=Physo130169;rank=9 scaffold_10 . exon 447142 447221 . - . ID=Physo130169.9;Parent=Physo130169;constitutive=1;ensembl_phase=1;rank=9 scaffold_10 . CDS 447341 447390 . - 0 ID=Physo130169;Parent=Physo130169;rank=8 scaffold_10 . exon 447341 447390 . - . ID=Physo130169.8;Parent=Physo130169;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_10 . CDS 447546 447608 . - 0 ID=Physo130169;Parent=Physo130169;rank=7 scaffold_10 . exon 447546 447608 . - . ID=Physo130169.7;Parent=Physo130169;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_10 . CDS 447758 447806 . - 0 ID=Physo130169;Parent=Physo130169;rank=6 scaffold_10 . exon 447758 447806 . - . ID=Physo130169.6;Parent=Physo130169;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_10 . CDS 447904 447911 . - 0 ID=Physo130169;Parent=Physo130169;rank=5 scaffold_10 . exon 447904 447911 . - . ID=Physo130169.5;Parent=Physo130169;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 448019 448968 . - 0 ID=Physo130169;Parent=Physo130169;rank=4 scaffold_10 . exon 448019 448968 . - . ID=Physo130169.4;Parent=Physo130169;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 449054 449650 . - 0 ID=Physo130169;Parent=Physo130169;rank=3 scaffold_10 . CDS 449846 451108 . - 0 ID=Physo130169;Parent=Physo130169;rank=2 scaffold_10 . CDS 451748 453496 . - 0 ID=Physo130169;Parent=Physo130169;rank=1 scaffold_10 . biological_region 452744 452747 0.999 - . logic_name=eponine scaffold_10 . biological_region 453140 453144 0.999 + . logic_name=eponine scaffold_10 . biological_region 453302 453307 0.999 + . logic_name=eponine scaffold_10 . biological_region 453368 453373 0.999 + . logic_name=eponine scaffold_10 . repeat_region 454937 454970 . ? . description=trf scaffold_10 . biological_region 455019 455021 0.999 - . logic_name=eponine scaffold_10 . biological_region 456746 456751 0.999 + . logic_name=eponine scaffold_10 . biological_region 458270 458276 0.999 - . logic_name=eponine scaffold_10 . exon 449054 449650 . - . ID=Physo130169.3;Parent=Physo130169;constitutive=1;rank=3 scaffold_10 . exon 449846 451108 . - . ID=Physo130169.2;Parent=Physo130169;constitutive=1;rank=2 scaffold_10 . exon 451748 453496 . - . ID=Physo130169.1;Parent=Physo130169;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 454860 456341 . + . ID=Physo130170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100128;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 454860 456341 . + . ID=Physo130170;Parent=Physo130170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 454860 456341 . + 0 ID=Physo130170;Parent=Physo130170;rank=1 scaffold_10 . exon 454860 456341 . + . ID=Physo130170.1;Parent=Physo130170;constitutive=1;rank=1 scaffold_10 . repeat_region 461670 461677 . ? . description=dust scaffold_10 ensembl protein_coding_gene 464664 465026 . + . ID=Physo130171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100129;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 464664 465026 . + . ID=Physo130171;Parent=Physo130171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 464664 465026 . + 0 ID=Physo130171;Parent=Physo130171;rank=1 scaffold_10 . exon 464664 465026 . + . ID=Physo130171.1;Parent=Physo130171;constitutive=1;rank=1 scaffold_10 . biological_region 470155 470161 0.999 - . logic_name=eponine scaffold_10 . biological_region 470177 470177 0.999 - . logic_name=eponine scaffold_10 . biological_region 470204 470209 0.999 - . logic_name=eponine scaffold_10 . biological_region 470288 470296 0.999 - . logic_name=eponine scaffold_10 . repeat_region 472756 472887 . - . description=GypsyPi-1c_I-int scaffold_10 . biological_region 472934 472935 0.999 + . logic_name=eponine scaffold_10 . biological_region 473200 473203 0.999 + . logic_name=eponine scaffold_10 . biological_region 473211 473212 0.999 - . logic_name=eponine scaffold_10 . repeat_region 473216 473289 . ? . description=trf scaffold_10 . biological_region 473232 473234 0.999 - . logic_name=eponine scaffold_10 . repeat_region 473378 473418 . ? . description=trf scaffold_10 . repeat_region 473469 475919 . - . description=GypsyPi-1c_I-int scaffold_10 . biological_region 474467 474469 0.999 - . logic_name=eponine scaffold_10 . repeat_region 476404 476938 . - . description=GypsyPi-1c_I-int scaffold_10 ensembl protein_coding_gene 473151 475943 . - . ID=Physo130172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100130;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 473151 475943 . - . ID=Physo130172;Parent=Physo130172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 473151 473629 . - 0 ID=Physo130172;Parent=Physo130172;rank=4 scaffold_10 . exon 473151 473629 . - . ID=Physo130172.4;Parent=Physo130172;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 473987 474473 . - 0 ID=Physo130172;Parent=Physo130172;rank=3 scaffold_10 . exon 473987 474473 . - . ID=Physo130172.3;Parent=Physo130172;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 474558 475224 . - 0 ID=Physo130172;Parent=Physo130172;rank=2 scaffold_10 . exon 474558 475224 . - . ID=Physo130172.2;Parent=Physo130172;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 475528 475943 . - 0 ID=Physo130172;Parent=Physo130172;rank=1 scaffold_10 . exon 475528 475943 . - . ID=Physo130172.1;Parent=Physo130172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . repeat_region 479188 479200 . ? . description=dust scaffold_10 . repeat_region 487792 487803 . ? . description=dust scaffold_10 . biological_region 494943 494943 0.999 + . logic_name=eponine scaffold_10 . biological_region 496095 496098 0.999 + . logic_name=eponine scaffold_10 . biological_region 497293 497296 0.999 + . logic_name=eponine scaffold_10 . biological_region 497343 497346 0.999 + . logic_name=eponine scaffold_10 . biological_region 497700 497704 0.999 - . logic_name=eponine scaffold_10 . biological_region 497738 497745 0.999 + . logic_name=eponine scaffold_10 . biological_region 497863 497863 0.999 + . logic_name=eponine scaffold_10 . biological_region 497905 497910 0.999 - . logic_name=eponine scaffold_10 . biological_region 498047 498050 0.999 + . logic_name=eponine scaffold_10 . biological_region 498049 498054 0.999 - . logic_name=eponine scaffold_10 . biological_region 498077 498079 0.999 + . logic_name=eponine scaffold_10 . biological_region 498103 498107 0.999 + . logic_name=eponine scaffold_10 . biological_region 498200 498201 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 491716 493439 . - . ID=Physo130173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100131;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 491716 493439 . - . ID=Physo130173;Parent=Physo130173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 491716 492233 . - 0 ID=Physo130173;Parent=Physo130173;rank=6 scaffold_10 . exon 491716 492233 . - . ID=Physo130173.6;Parent=Physo130173;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 492353 492372 . - 0 ID=Physo130173;Parent=Physo130173;rank=5 scaffold_10 . exon 492353 492372 . - . ID=Physo130173.5;Parent=Physo130173;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 492565 492595 . - 0 ID=Physo130173;Parent=Physo130173;rank=4 scaffold_10 . exon 492565 492595 . - . ID=Physo130173.4;Parent=Physo130173;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_10 . CDS 492651 492981 . - 0 ID=Physo130173;Parent=Physo130173;rank=3 scaffold_10 . exon 492651 492981 . - . ID=Physo130173.3;Parent=Physo130173;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 493093 493155 . - 0 ID=Physo130173;Parent=Physo130173;rank=2 scaffold_10 . exon 493093 493155 . - . ID=Physo130173.2;Parent=Physo130173;constitutive=1;rank=2 scaffold_10 . CDS 493233 493439 . - 0 ID=Physo130173;Parent=Physo130173;rank=1 scaffold_10 . exon 493233 493439 . - . ID=Physo130173.1;Parent=Physo130173;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 494668 498228 . - . ID=Physo130174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100132;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 494668 498228 . - . ID=Physo130174;Parent=Physo130174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 494668 495294 . - 0 ID=Physo130174;Parent=Physo130174;rank=2 scaffold_10 . exon 494668 495294 . - . ID=Physo130174.2;Parent=Physo130174;constitutive=1;rank=2 scaffold_10 . CDS 495364 498228 . - 0 ID=Physo130174;Parent=Physo130174;rank=1 scaffold_10 . exon 495364 498228 . - . ID=Physo130174.1;Parent=Physo130174;constitutive=1;rank=1 scaffold_10 . repeat_region 499186 499198 . ? . description=dust scaffold_10 . repeat_region 501311 501334 . ? . description=trf scaffold_10 . repeat_region 505884 505941 . ? . description=dust scaffold_10 . repeat_region 506272 506294 . ? . description=trf scaffold_10 . repeat_region 508463 508491 . ? . description=trf scaffold_10 ensembl protein_coding_gene 499438 501262 . - . ID=Physo130175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100133;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 499438 501262 . - . ID=Physo130175;Parent=Physo130175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 499438 499683 . - 0 ID=Physo130175;Parent=Physo130175;rank=4 scaffold_10 . exon 499438 499683 . - . ID=Physo130175.4;Parent=Physo130175;constitutive=1;rank=4 scaffold_10 . CDS 499797 500137 . - 0 ID=Physo130175;Parent=Physo130175;rank=3 scaffold_10 . exon 499797 500137 . - . ID=Physo130175.3;Parent=Physo130175;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 500224 500279 . - 0 ID=Physo130175;Parent=Physo130175;rank=2 scaffold_10 . exon 500224 500279 . - . ID=Physo130175.2;Parent=Physo130175;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 500355 501262 . - 0 ID=Physo130175;Parent=Physo130175;rank=1 scaffold_10 . exon 500355 501262 . - . ID=Physo130175.1;Parent=Physo130175;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 502524 506276 . + . ID=Physo130176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100134;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 502524 506276 . + . ID=Physo130176;Parent=Physo130176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 502524 503256 . + 0 ID=Physo130176;Parent=Physo130176;rank=1 scaffold_10 . exon 502524 503256 . + . ID=Physo130176.1;Parent=Physo130176;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 503347 504281 . + 0 ID=Physo130176;Parent=Physo130176;rank=2 scaffold_10 . exon 503347 504281 . + . ID=Physo130176.2;Parent=Physo130176;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 504357 504852 . + 0 ID=Physo130176;Parent=Physo130176;rank=3 scaffold_10 . exon 504357 504852 . + . ID=Physo130176.3;Parent=Physo130176;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 504926 505275 . + 0 ID=Physo130176;Parent=Physo130176;rank=4 scaffold_10 . exon 504926 505275 . + . ID=Physo130176.4;Parent=Physo130176;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 505376 505459 . + 0 ID=Physo130176;Parent=Physo130176;rank=5 scaffold_10 . exon 505376 505459 . + . ID=Physo130176.5;Parent=Physo130176;constitutive=1;rank=5 scaffold_10 . CDS 505534 506202 . + 0 ID=Physo130176;Parent=Physo130176;rank=6 scaffold_10 . exon 505534 506276 . + . ID=Physo130176.6;Parent=Physo130176;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_10 ensembl protein_coding_gene 506499 510861 . + . ID=Physo130177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100135;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 506499 510861 . + . ID=Physo130177;Parent=Physo130177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 506499 506632 . + 0 ID=Physo130177;Parent=Physo130177;rank=1 scaffold_10 . exon 506499 506632 . + . ID=Physo130177.1;Parent=Physo130177;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 506708 506843 . + 0 ID=Physo130177;Parent=Physo130177;rank=2 scaffold_10 . exon 506708 506843 . + . ID=Physo130177.2;Parent=Physo130177;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 506927 507023 . + 0 ID=Physo130177;Parent=Physo130177;rank=3 scaffold_10 . exon 506927 507023 . + . ID=Physo130177.3;Parent=Physo130177;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 507100 508092 . + 0 ID=Physo130177;Parent=Physo130177;rank=4 scaffold_10 . exon 507100 508092 . + . ID=Physo130177.4;Parent=Physo130177;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 508154 508266 . + 0 ID=Physo130177;Parent=Physo130177;rank=5 scaffold_10 . exon 508154 508266 . + . ID=Physo130177.5;Parent=Physo130177;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 508453 508908 . + 0 ID=Physo130177;Parent=Physo130177;rank=6 scaffold_10 . exon 508453 508908 . + . ID=Physo130177.6;Parent=Physo130177;constitutive=1;rank=6 scaffold_10 . CDS 509153 509395 . + 0 ID=Physo130177;Parent=Physo130177;rank=7 scaffold_10 . CDS 509468 509709 . + 0 ID=Physo130177;Parent=Physo130177;rank=8 scaffold_10 . CDS 509791 509899 . + 0 ID=Physo130177;Parent=Physo130177;rank=9 scaffold_10 . CDS 510133 510294 . + 0 ID=Physo130177;Parent=Physo130177;rank=10 scaffold_10 . CDS 510378 510595 . + 0 ID=Physo130177;Parent=Physo130177;rank=11 scaffold_10 . CDS 510678 510861 . + 0 ID=Physo130177;Parent=Physo130177;rank=12 scaffold_10 . biological_region 511558 511563 0.999 - . logic_name=eponine scaffold_10 . biological_region 514326 514329 0.999 - . logic_name=eponine scaffold_10 . biological_region 514374 514376 0.999 - . logic_name=eponine scaffold_10 . biological_region 516431 516435 0.999 + . logic_name=eponine scaffold_10 . biological_region 517872 517872 0.999 - . logic_name=eponine scaffold_10 . exon 509153 509395 . + . ID=Physo130177.7;Parent=Physo130177;constitutive=1;rank=7 scaffold_10 . exon 509468 509709 . + . ID=Physo130177.8;Parent=Physo130177;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_10 . exon 509791 509899 . + . ID=Physo130177.9;Parent=Physo130177;constitutive=1;ensembl_phase=2;rank=9 scaffold_10 . exon 510133 510294 . + . ID=Physo130177.10;Parent=Physo130177;constitutive=1;rank=10 scaffold_10 . exon 510378 510595 . + . ID=Physo130177.11;Parent=Physo130177;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_10 . exon 510678 510861 . + . ID=Physo130177.12;Parent=Physo130177;constitutive=1;ensembl_phase=2;rank=12 scaffold_10 ensembl protein_coding_gene 515304 517221 . - . ID=Physo130178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100136;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 515304 517221 . - . ID=Physo130178;Parent=Physo130178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 515304 515361 . - 0 ID=Physo130178;Parent=Physo130178;rank=5 scaffold_10 . exon 515304 515361 . - . ID=Physo130178.5;Parent=Physo130178;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 515477 516130 . - 0 ID=Physo130178;Parent=Physo130178;rank=4 scaffold_10 . exon 515477 516130 . - . ID=Physo130178.4;Parent=Physo130178;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_10 . CDS 516281 516473 . - 0 ID=Physo130178;Parent=Physo130178;rank=3 scaffold_10 . exon 516281 516473 . - . ID=Physo130178.3;Parent=Physo130178;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . CDS 516718 517009 . - 0 ID=Physo130178;Parent=Physo130178;rank=2 scaffold_10 . exon 516718 517009 . - . ID=Physo130178.2;Parent=Physo130178;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 517072 517221 . - 0 ID=Physo130178;Parent=Physo130178;rank=1 scaffold_10 . exon 517072 517221 . - . ID=Physo130178.1;Parent=Physo130178;constitutive=1;rank=1 scaffold_10 . repeat_region 522836 522875 . ? . description=trf scaffold_10 . repeat_region 524726 524746 . ? . description=dust scaffold_10 . repeat_region 524726 524746 . ? . description=trf scaffold_10 ensembl protein_coding_gene 521693 524952 . - . ID=Physo130179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100137;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 521693 524952 . - . ID=Physo130179;Parent=Physo130179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 521693 523162 . - 0 ID=Physo130179;Parent=Physo130179;rank=3 scaffold_10 . exon 521693 523162 . - . ID=Physo130179.3;Parent=Physo130179;constitutive=1;rank=3 scaffold_10 . CDS 523235 523941 . - 0 ID=Physo130179;Parent=Physo130179;rank=2 scaffold_10 . exon 523235 523941 . - . ID=Physo130179.2;Parent=Physo130179;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 524014 524782 . - 0 ID=Physo130179;Parent=Physo130179;rank=1 scaffold_10 . exon 524014 524952 . - . ID=Physo130179.1;Parent=Physo130179;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 527500 528933 . - . ID=Physo130181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100139;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 527500 528933 . - . ID=Physo130181;Parent=Physo130181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 527500 527525 . - 0 ID=Physo130181;Parent=Physo130181;rank=4 scaffold_10 . exon 527500 527525 . - . ID=Physo130181.4;Parent=Physo130181;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 527564 528143 . - 0 ID=Physo130181;Parent=Physo130181;rank=3 scaffold_10 . exon 527564 528143 . - . ID=Physo130181.3;Parent=Physo130181;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 528224 528370 . - 0 ID=Physo130181;Parent=Physo130181;rank=2 scaffold_10 . exon 528224 528370 . - . ID=Physo130181.2;Parent=Physo130181;constitutive=1;rank=2 scaffold_10 . CDS 528436 528933 . - 0 ID=Physo130181;Parent=Physo130181;rank=1 scaffold_10 . exon 528436 528933 . - . ID=Physo130181.1;Parent=Physo130181;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 525743 527203 . + . ID=Physo156044;biotype=protein_coding;external_name=C_scaffold_10000063;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 525743 527203 . + . ID=Physo156044;Parent=Physo156044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 525743 525870 . + 0 ID=Physo156044;Parent=Physo156044;rank=1 scaffold_10 . exon 525743 525870 . + . ID=Physo156044.1;Parent=Physo156044;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 525944 526007 . + 0 ID=Physo156044;Parent=Physo156044;rank=2 scaffold_10 . exon 525944 526007 . + . ID=Physo156044.2;Parent=Physo156044;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 526071 526352 . + 0 ID=Physo156044;Parent=Physo156044;rank=3 scaffold_10 . exon 526071 526352 . + . ID=Physo156044.3;Parent=Physo156044;constitutive=1;rank=3 scaffold_10 . CDS 526428 526726 . + 0 ID=Physo156044;Parent=Physo156044;rank=4 scaffold_10 . exon 526428 526726 . + . ID=Physo156044.4;Parent=Physo156044;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 526913 527063 . + 0 ID=Physo156044;Parent=Physo156044;rank=5 scaffold_10 . exon 526913 527063 . + . ID=Physo156044.5;Parent=Physo156044;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 527138 527203 . + 0 ID=Physo156044;Parent=Physo156044;rank=6 scaffold_10 . exon 527138 527203 . + . ID=Physo156044.6;Parent=Physo156044;constitutive=1;rank=6 scaffold_10 . biological_region 528679 528680 0.999 - . logic_name=eponine scaffold_10 . biological_region 528795 528797 0.999 + . logic_name=eponine scaffold_10 . biological_region 528817 528823 0.999 + . logic_name=eponine scaffold_10 . biological_region 528853 528854 0.999 - . logic_name=eponine scaffold_10 . biological_region 528879 528883 0.999 - . logic_name=eponine scaffold_10 . biological_region 528903 528908 0.999 - . logic_name=eponine scaffold_10 . biological_region 533032 533036 0.999 + . logic_name=eponine scaffold_10 . biological_region 537637 537640 0.999 - . logic_name=eponine scaffold_10 . biological_region 537778 537787 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 529896 530424 . - . ID=Physo130182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100140;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 529896 530424 . - . ID=Physo130182;Parent=Physo130182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 529896 530192 . - 0 ID=Physo130182;Parent=Physo130182;rank=2 scaffold_10 . exon 529896 530192 . - . ID=Physo130182.2;Parent=Physo130182;constitutive=1;rank=2 scaffold_10 . CDS 530416 530424 . - 0 ID=Physo130182;Parent=Physo130182;rank=1 scaffold_10 . exon 530416 530424 . - . ID=Physo130182.1;Parent=Physo130182;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 532479 533582 . + . ID=Physo130183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100141;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 532479 533582 . + . ID=Physo130183;Parent=Physo130183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 532479 532487 . + 0 ID=Physo130183;Parent=Physo130183;rank=1 scaffold_10 . exon 532479 532487 . + . ID=Physo130183.1;Parent=Physo130183;constitutive=1;rank=1 scaffold_10 . CDS 532793 532840 . + 0 ID=Physo130183;Parent=Physo130183;rank=2 scaffold_10 . exon 532793 532840 . + . ID=Physo130183.2;Parent=Physo130183;constitutive=1;rank=2 scaffold_10 . CDS 532969 533097 . + 0 ID=Physo130183;Parent=Physo130183;rank=3 scaffold_10 . exon 532969 533097 . + . ID=Physo130183.3;Parent=Physo130183;constitutive=1;rank=3 scaffold_10 . CDS 533171 533276 . + 0 ID=Physo130183;Parent=Physo130183;rank=4 scaffold_10 . exon 533171 533276 . + . ID=Physo130183.4;Parent=Physo130183;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 533299 533582 . + 0 ID=Physo130183;Parent=Physo130183;rank=5 scaffold_10 . exon 533299 533582 . + . ID=Physo130183.5;Parent=Physo130183;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 ensembl protein_coding_gene 538443 542725 . + . ID=Physo130184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100142;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 538443 542725 . + . ID=Physo130184;Parent=Physo130184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 538443 542669 . + 0 ID=Physo130184;Parent=Physo130184;rank=1 scaffold_10 . exon 538443 542725 . + . ID=Physo130184.1;Parent=Physo130184;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_10 . repeat_region 542834 542841 . ? . description=dust scaffold_10 . repeat_region 547361 547368 . ? . description=dust scaffold_10 . repeat_region 548165 548223 . ? . description=trf scaffold_10 . repeat_region 548228 548235 . ? . description=dust scaffold_10 ensembl protein_coding_gene 543101 544228 . + . ID=Physo108454;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100013;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 543101 544228 . + . ID=Physo108454;Parent=Physo108454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 543101 543517 . + 0 ID=Physo108454;Parent=Physo108454;rank=1 scaffold_10 . exon 543101 543517 . + . ID=Physo108454.1;Parent=Physo108454;constitutive=1;rank=1 scaffold_10 . CDS 543545 544228 . + 0 ID=Physo108454;Parent=Physo108454;rank=2 scaffold_10 . exon 543545 544228 . + . ID=Physo108454.2;Parent=Physo108454;constitutive=1;rank=2 scaffold_10 ensembl protein_coding_gene 546933 548537 . - . ID=Physo112609;biotype=protein_coding;external_name=estExt_Genewise1.C_100055;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 546933 548537 . - . ID=Physo112609;Parent=Physo112609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 546933 547055 . - 0 ID=Physo112609;Parent=Physo112609;rank=6 scaffold_10 . exon 546933 547055 . - . ID=Physo112609.6;Parent=Physo112609;constitutive=1;rank=6 scaffold_10 . CDS 547127 547345 . - 0 ID=Physo112609;Parent=Physo112609;rank=5 scaffold_10 . exon 547127 547345 . - . ID=Physo112609.5;Parent=Physo112609;constitutive=1;rank=5 scaffold_10 . CDS 547427 547546 . - 0 ID=Physo112609;Parent=Physo112609;rank=4 scaffold_10 . exon 547427 547546 . - . ID=Physo112609.4;Parent=Physo112609;constitutive=1;rank=4 scaffold_10 . CDS 547613 547811 . - 0 ID=Physo112609;Parent=Physo112609;rank=3 scaffold_10 . exon 547613 547811 . - . ID=Physo112609.3;Parent=Physo112609;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 547903 548123 . - 0 ID=Physo112609;Parent=Physo112609;rank=2 scaffold_10 . exon 547903 548123 . - . ID=Physo112609.2;Parent=Physo112609;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 548244 548393 . - 0 ID=Physo112609;Parent=Physo112609;rank=1 scaffold_10 . exon 548244 548537 . - . ID=Physo112609.1;Parent=Physo112609;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . biological_region 548932 548933 0.999 + . logic_name=eponine scaffold_10 . biological_region 549057 549058 0.999 + . logic_name=eponine scaffold_10 . biological_region 550925 550926 0.999 + . logic_name=eponine scaffold_10 . biological_region 554515 554516 0.999 - . logic_name=eponine scaffold_10 . biological_region 554823 554828 0.999 + . logic_name=eponine scaffold_10 . biological_region 554895 554900 0.999 - . logic_name=eponine scaffold_10 . biological_region 554904 554904 0.999 + . logic_name=eponine scaffold_10 . biological_region 554948 554952 0.999 - . logic_name=eponine scaffold_10 . biological_region 555901 555904 0.999 + . logic_name=eponine scaffold_10 . biological_region 555944 555949 0.999 - . logic_name=eponine scaffold_10 . biological_region 555969 555970 0.999 - . logic_name=eponine scaffold_10 . biological_region 556862 556863 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 548742 550342 . + . ID=Physo130187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100145;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 548742 550342 . + . ID=Physo130187;Parent=Physo130187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 548742 548773 . + 0 ID=Physo130187;Parent=Physo130187;rank=1 scaffold_10 . exon 548742 548773 . + . ID=Physo130187.1;Parent=Physo130187;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 548845 549196 . + 0 ID=Physo130187;Parent=Physo130187;rank=2 scaffold_10 . exon 548845 549196 . + . ID=Physo130187.2;Parent=Physo130187;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 549273 549352 . + 0 ID=Physo130187;Parent=Physo130187;rank=3 scaffold_10 . exon 549273 549352 . + . ID=Physo130187.3;Parent=Physo130187;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 549506 549566 . + 0 ID=Physo130187;Parent=Physo130187;rank=4 scaffold_10 . exon 549506 549566 . + . ID=Physo130187.4;Parent=Physo130187;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 549645 550059 . + 0 ID=Physo130187;Parent=Physo130187;rank=5 scaffold_10 . exon 549645 550059 . + . ID=Physo130187.5;Parent=Physo130187;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 550134 550342 . + 0 ID=Physo130187;Parent=Physo130187;rank=6 scaffold_10 . exon 550134 550342 . + . ID=Physo130187.6;Parent=Physo130187;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 ensembl protein_coding_gene 550991 555056 . - . ID=Physo130188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100146;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 550991 555056 . - . ID=Physo130188;Parent=Physo130188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 550991 554624 . - 0 ID=Physo130188;Parent=Physo130188;rank=2 scaffold_10 . exon 550991 554624 . - . ID=Physo130188.2;Parent=Physo130188;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 554713 555056 . - 0 ID=Physo130188;Parent=Physo130188;rank=1 scaffold_10 . exon 554713 555056 . - . ID=Physo130188.1;Parent=Physo130188;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 556554 560612 . - . ID=Physo156046;biotype=protein_coding;external_name=C_scaffold_10000065;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 556554 560612 . - . ID=Physo156046;Parent=Physo156046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 556554 557216 . - 0 ID=Physo156046;Parent=Physo156046;rank=5 scaffold_10 . exon 556554 557216 . - . ID=Physo156046.5;Parent=Physo156046;constitutive=1;rank=5 scaffold_10 . CDS 557297 557712 . - 0 ID=Physo156046;Parent=Physo156046;rank=4 scaffold_10 . exon 557297 557712 . - . ID=Physo156046.4;Parent=Physo156046;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 557754 558189 . - 0 ID=Physo156046;Parent=Physo156046;rank=3 scaffold_10 . exon 557754 558189 . - . ID=Physo156046.3;Parent=Physo156046;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 558558 559367 . - 0 ID=Physo156046;Parent=Physo156046;rank=2 scaffold_10 . exon 558558 559367 . - . ID=Physo156046.2;Parent=Physo156046;constitutive=1;rank=2 scaffold_10 . CDS 559413 560612 . - 0 ID=Physo156046;Parent=Physo156046;rank=1 scaffold_10 . repeat_region 559179 559259 . - . description=Sola3-2_PS scaffold_10 . repeat_region 561958 562144 . - . description=Sola3-2_PS scaffold_10 . repeat_region 566046 566228 . + . description=Sola3-2_PS scaffold_10 . repeat_region 567317 567356 . ? . description=trf scaffold_10 . repeat_region 568548 568555 . ? . description=dust scaffold_10 ensembl protein_coding_gene 561335 563374 . - . ID=Physo130190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100148;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 561335 563374 . - . ID=Physo130190;Parent=Physo130190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 561335 563374 . - 0 ID=Physo130190;Parent=Physo130190;rank=1 scaffold_10 . exon 561335 563374 . - . ID=Physo130190.1;Parent=Physo130190;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 564813 566858 . + . ID=Physo130191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100149;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 564813 566858 . + . ID=Physo130191;Parent=Physo130191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 564813 566858 . + 0 ID=Physo130191;Parent=Physo130191;rank=1 scaffold_10 . exon 564813 566858 . + . ID=Physo130191.1;Parent=Physo130191;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 566976 568478 . - . ID=Physo130192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100150;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 566976 568478 . - . ID=Physo130192;Parent=Physo130192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 566976 567521 . - 0 ID=Physo130192;Parent=Physo130192;rank=4 scaffold_10 . exon 566976 567521 . - . ID=Physo130192.4;Parent=Physo130192;constitutive=1;rank=4 scaffold_10 . CDS 567592 567663 . - 0 ID=Physo130192;Parent=Physo130192;rank=3 scaffold_10 . exon 567592 567663 . - . ID=Physo130192.3;Parent=Physo130192;constitutive=1;rank=3 scaffold_10 . CDS 567729 567846 . - 0 ID=Physo130192;Parent=Physo130192;rank=2 scaffold_10 . exon 567729 567846 . - . ID=Physo130192.2;Parent=Physo130192;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 567925 568478 . - 0 ID=Physo130192;Parent=Physo130192;rank=1 scaffold_10 . exon 567925 568478 . - . ID=Physo130192.1;Parent=Physo130192;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . exon 559413 560612 . - . ID=Physo156046.1;Parent=Physo156046;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 568735 572526 . - . ID=Physo130193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100151;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 568735 572526 . - . ID=Physo130193;Parent=Physo130193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 568735 572526 . - 0 ID=Physo130193;Parent=Physo130193;rank=1 scaffold_10 . exon 568735 572526 . - . ID=Physo130193.1;Parent=Physo130193;constitutive=1;rank=1 scaffold_10 . repeat_region 579833 579887 . ? . description=dust scaffold_10 . repeat_region 584973 584983 . ? . description=dust scaffold_10 . biological_region 585328 585330 0.999 + . logic_name=eponine scaffold_10 . biological_region 585418 585420 0.999 - . logic_name=eponine scaffold_10 . biological_region 585442 585449 0.999 - . logic_name=eponine scaffold_10 . repeat_region 586613 586726 . - . description=GypsyPi-1c_I-int scaffold_10 . repeat_region 588507 588515 . ? . description=dust scaffold_10 ensembl protein_coding_gene 580501 584649 . + . ID=Physo130194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100152;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 580501 584649 . + . ID=Physo130194;Parent=Physo130194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 580501 581242 . + 0 ID=Physo130194;Parent=Physo130194;rank=1 scaffold_10 . exon 580501 581242 . + . ID=Physo130194.1;Parent=Physo130194;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 581353 581628 . + 0 ID=Physo130194;Parent=Physo130194;rank=2 scaffold_10 . exon 581353 581628 . + . ID=Physo130194.2;Parent=Physo130194;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 581752 581828 . + 0 ID=Physo130194;Parent=Physo130194;rank=3 scaffold_10 . exon 581752 581828 . + . ID=Physo130194.3;Parent=Physo130194;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 581870 582724 . + 0 ID=Physo130194;Parent=Physo130194;rank=4 scaffold_10 . exon 581870 582724 . + . ID=Physo130194.4;Parent=Physo130194;constitutive=1;rank=4 scaffold_10 . CDS 583340 583790 . + 0 ID=Physo130194;Parent=Physo130194;rank=5 scaffold_10 . exon 583340 583790 . + . ID=Physo130194.5;Parent=Physo130194;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 583849 584579 . + 0 ID=Physo130194;Parent=Physo130194;rank=6 scaffold_10 . exon 583849 584649 . + . ID=Physo130194.6;Parent=Physo130194;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_10 ensembl protein_coding_gene 585082 586551 . + . ID=Physo130195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100153;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 585082 586551 . + . ID=Physo130195;Parent=Physo130195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 585082 586551 . + 0 ID=Physo130195;Parent=Physo130195;rank=1 scaffold_10 . exon 585082 586551 . + . ID=Physo130195.1;Parent=Physo130195;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 587539 588422 . + . ID=Physo130196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100154;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 587539 588422 . + . ID=Physo130196;Parent=Physo130196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 587539 587644 . + 0 ID=Physo130196;Parent=Physo130196;rank=1 scaffold_10 . exon 587539 587644 . + . ID=Physo130196.1;Parent=Physo130196;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 587767 587850 . + 0 ID=Physo130196;Parent=Physo130196;rank=2 scaffold_10 . exon 587767 587850 . + . ID=Physo130196.2;Parent=Physo130196;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 588121 588422 . + 0 ID=Physo130196;Parent=Physo130196;rank=3 scaffold_10 . exon 588121 588422 . + . ID=Physo130196.3;Parent=Physo130196;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . repeat_region 592935 592972 . + . description=Sola3-2_PS scaffold_10 ensembl protein_coding_gene 592029 595134 . - . ID=Physo130197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100155;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 592029 595134 . - . ID=Physo130197;Parent=Physo130197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 592029 592485 . - 0 ID=Physo130197;Parent=Physo130197;rank=5 scaffold_10 . exon 592029 592485 . - . ID=Physo130197.5;Parent=Physo130197;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 592739 592827 . - 0 ID=Physo130197;Parent=Physo130197;rank=4 scaffold_10 . exon 592739 592827 . - . ID=Physo130197.4;Parent=Physo130197;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 593734 594135 . - 0 ID=Physo130197;Parent=Physo130197;rank=3 scaffold_10 . exon 593734 594135 . - . ID=Physo130197.3;Parent=Physo130197;constitutive=1;rank=3 scaffold_10 . CDS 594167 594637 . - 0 ID=Physo130197;Parent=Physo130197;rank=2 scaffold_10 . exon 594167 594637 . - . ID=Physo130197.2;Parent=Physo130197;constitutive=1;rank=2 scaffold_10 . CDS 594700 595134 . - 0 ID=Physo130197;Parent=Physo130197;rank=1 scaffold_10 . exon 594700 595134 . - . ID=Physo130197.1;Parent=Physo130197;constitutive=1;rank=1 scaffold_10 . biological_region 598521 598523 0.999 + . logic_name=eponine scaffold_10 . biological_region 598591 598592 0.999 + . logic_name=eponine scaffold_10 . repeat_region 599502 600864 . + . description=GypsyPi-1c_I-int scaffold_10 . repeat_region 601117 601566 . + . description=GypsyPi-1c_I-int scaffold_10 . biological_region 601413 601415 0.999 - . logic_name=eponine scaffold_10 . biological_region 602720 602724 0.999 - . logic_name=eponine scaffold_10 . biological_region 602739 602747 0.999 - . logic_name=eponine scaffold_10 . repeat_region 604104 604111 . ? . description=dust scaffold_10 . repeat_region 604849 604900 . ? . description=trf scaffold_10 . repeat_region 605238 605251 . ? . description=dust scaffold_10 . repeat_region 607661 607704 . ? . description=trf scaffold_10 ensembl protein_coding_gene 598988 602434 . + . ID=Physo130198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100156;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 598988 602434 . + . ID=Physo130198;Parent=Physo130198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 598988 599026 . + 0 ID=Physo130198;Parent=Physo130198;rank=1 scaffold_10 . exon 598988 599026 . + . ID=Physo130198.1;Parent=Physo130198;constitutive=1;rank=1 scaffold_10 . CDS 599146 600528 . + 0 ID=Physo130198;Parent=Physo130198;rank=2 scaffold_10 . exon 599146 600528 . + . ID=Physo130198.2;Parent=Physo130198;constitutive=1;rank=2 scaffold_10 . CDS 600591 601061 . + 0 ID=Physo130198;Parent=Physo130198;rank=3 scaffold_10 . exon 600591 601061 . + . ID=Physo130198.3;Parent=Physo130198;constitutive=1;rank=3 scaffold_10 . CDS 601093 601494 . + 0 ID=Physo130198;Parent=Physo130198;rank=4 scaffold_10 . exon 601093 601494 . + . ID=Physo130198.4;Parent=Physo130198;constitutive=1;rank=4 scaffold_10 . CDS 601561 601858 . + 0 ID=Physo130198;Parent=Physo130198;rank=5 scaffold_10 . exon 601561 601858 . + . ID=Physo130198.5;Parent=Physo130198;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 601934 601997 . + 0 ID=Physo130198;Parent=Physo130198;rank=6 scaffold_10 . exon 601934 601997 . + . ID=Physo130198.6;Parent=Physo130198;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_10 . CDS 602086 602434 . + 0 ID=Physo130198;Parent=Physo130198;rank=7 scaffold_10 . exon 602086 602434 . + . ID=Physo130198.7;Parent=Physo130198;constitutive=1;ensembl_phase=2;rank=7 scaffold_10 ensembl protein_coding_gene 603406 603918 . + . ID=Physo130199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100157;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 603406 603918 . + . ID=Physo130199;Parent=Physo130199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 603406 603503 . + 0 ID=Physo130199;Parent=Physo130199;rank=1 scaffold_10 . exon 603406 603503 . + . ID=Physo130199.1;Parent=Physo130199;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 603545 603744 . + 0 ID=Physo130199;Parent=Physo130199;rank=2 scaffold_10 . exon 603545 603744 . + . ID=Physo130199.2;Parent=Physo130199;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 603833 603918 . + 0 ID=Physo130199;Parent=Physo130199;rank=3 scaffold_10 . exon 603833 603918 . + . ID=Physo130199.3;Parent=Physo130199;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 ensembl protein_coding_gene 612477 615346 . - . ID=Physo130200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100158;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 612477 615346 . - . ID=Physo130200;Parent=Physo130200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 612477 613206 . - . ID=Physo130200.3;Parent=Physo130200;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_10 . CDS 612578 613206 . - 0 ID=Physo130200;Parent=Physo130200;rank=3 scaffold_10 . CDS 613228 614189 . - 0 ID=Physo130200;Parent=Physo130200;rank=2 scaffold_10 . exon 613228 614189 . - . ID=Physo130200.2;Parent=Physo130200;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 614265 615346 . - 0 ID=Physo130200;Parent=Physo130200;rank=1 scaffold_10 . exon 614265 615346 . - . ID=Physo130200.1;Parent=Physo130200;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 615483 617855 . - . ID=Physo130201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100159;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 615483 617855 . - . ID=Physo130201;Parent=Physo130201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 615483 617855 . - 0 ID=Physo130201;Parent=Physo130201;rank=1 scaffold_10 . exon 615483 617855 . - . ID=Physo130201.1;Parent=Physo130201;constitutive=1;rank=1 scaffold_10 . biological_region 620565 620566 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 620699 621112 . + . ID=Physo130202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100160;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 620699 621112 . + . ID=Physo130202;Parent=Physo130202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 620699 621112 . + 0 ID=Physo130202;Parent=Physo130202;rank=1 scaffold_10 . exon 620699 621112 . + . ID=Physo130202.1;Parent=Physo130202;constitutive=1;rank=1 scaffold_10 ensembl pseudogene 627394 630444 . - . ID=Physo130203;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_100161;logic_name=jgi_physo1_1 scaffold_10 ensembl pseudogene 627394 630444 . - . ID=Physo130203;Parent=Physo130203;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_10 . exon 627394 630444 . - . ID=Physo130203.1;Parent=Physo130203;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . repeat_region 635336 635373 . ? . description=dust scaffold_10 . repeat_region 635794 635841 . ? . description=trf scaffold_10 . repeat_region 636546 636587 . ? . description=trf scaffold_10 . repeat_region 638230 638260 . ? . description=trf scaffold_10 ensembl protein_coding_gene 634327 635572 . - . ID=Physo130204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100162;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 634327 635572 . - . ID=Physo130204;Parent=Physo130204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 634327 635572 . - . ID=Physo130204.1;Parent=Physo130204;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_10 . CDS 634436 635572 . - 0 ID=Physo130204;Parent=Physo130204;rank=1 scaffold_10 . biological_region 643768 643773 0.999 + . logic_name=eponine scaffold_10 . biological_region 647422 647425 0.999 + . logic_name=eponine scaffold_10 . biological_region 647438 647444 0.999 + . logic_name=eponine scaffold_10 . biological_region 647439 647447 0.999 - . logic_name=eponine scaffold_10 . biological_region 647470 647474 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 645577 646460 . - . ID=Physo130205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100163;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 645577 646460 . - . ID=Physo130205;Parent=Physo130205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 645577 645627 . - 0 ID=Physo130205;Parent=Physo130205;rank=6 scaffold_10 . exon 645577 645627 . - . ID=Physo130205.6;Parent=Physo130205;constitutive=1;rank=6 scaffold_10 . CDS 645656 645694 . - 0 ID=Physo130205;Parent=Physo130205;rank=5 scaffold_10 . exon 645656 645694 . - . ID=Physo130205.5;Parent=Physo130205;constitutive=1;rank=5 scaffold_10 . CDS 645782 645926 . - 0 ID=Physo130205;Parent=Physo130205;rank=4 scaffold_10 . exon 645782 645926 . - . ID=Physo130205.4;Parent=Physo130205;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 646012 646104 . - 0 ID=Physo130205;Parent=Physo130205;rank=3 scaffold_10 . exon 646012 646104 . - . ID=Physo130205.3;Parent=Physo130205;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 646178 646241 . - 0 ID=Physo130205;Parent=Physo130205;rank=2 scaffold_10 . exon 646178 646241 . - . ID=Physo130205.2;Parent=Physo130205;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 646316 646460 . - 0 ID=Physo130205;Parent=Physo130205;rank=1 scaffold_10 . exon 646316 646460 . - . ID=Physo130205.1;Parent=Physo130205;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 647120 649094 . + . ID=Physo130206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100164;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 647120 649094 . + . ID=Physo130206;Parent=Physo130206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 647120 649094 . + . ID=Physo130206.1;Parent=Physo130206;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 647153 648991 . + 0 ID=Physo130206;Parent=Physo130206;rank=1 scaffold_10 . repeat_region 653237 653246 . ? . description=dust scaffold_10 . repeat_region 654851 654858 . ? . description=dust scaffold_10 . repeat_region 656856 656863 . ? . description=dust scaffold_10 . biological_region 659722 659724 0.999 + . logic_name=eponine scaffold_10 . repeat_region 661422 661464 . ? . description=trf scaffold_10 . biological_region 663077 663079 0.999 - . logic_name=eponine scaffold_10 . biological_region 663134 663134 0.999 + . logic_name=eponine scaffold_10 . biological_region 663171 663171 0.999 - . logic_name=eponine scaffold_10 . biological_region 663387 663389 0.999 + . logic_name=eponine scaffold_10 . biological_region 663480 663483 0.999 - . logic_name=eponine scaffold_10 . biological_region 665547 665554 0.999 + . logic_name=eponine scaffold_10 . biological_region 665670 665671 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 660861 661322 . - . ID=Physo130207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100165;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 660861 661322 . - . ID=Physo130207;Parent=Physo130207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 660861 661322 . - 0 ID=Physo130207;Parent=Physo130207;rank=1 scaffold_10 . exon 660861 661322 . - . ID=Physo130207.1;Parent=Physo130207;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 662764 664009 . + . ID=Physo130208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100166;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 662764 664009 . + . ID=Physo130208;Parent=Physo130208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 662764 663900 . + 0 ID=Physo130208;Parent=Physo130208;rank=1 scaffold_10 . exon 662764 664009 . + . ID=Physo130208.1;Parent=Physo130208;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 664786 665258 . - . ID=Physo130209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100167;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 664786 665258 . - . ID=Physo130209;Parent=Physo130209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 664786 664882 . - 0 ID=Physo130209;Parent=Physo130209;rank=3 scaffold_10 . exon 664786 664882 . - . ID=Physo130209.3;Parent=Physo130209;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 664955 665018 . - 0 ID=Physo130209;Parent=Physo130209;rank=2 scaffold_10 . exon 664955 665018 . - . ID=Physo130209.2;Parent=Physo130209;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 665093 665258 . - 0 ID=Physo130209;Parent=Physo130209;rank=1 scaffold_10 . exon 665093 665258 . - . ID=Physo130209.1;Parent=Physo130209;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 665864 666429 . + . ID=Physo130210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100168;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 665864 666429 . + . ID=Physo130210;Parent=Physo130210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 665864 665901 . + 0 ID=Physo130210;Parent=Physo130210;rank=1 scaffold_10 . exon 665864 665901 . + . ID=Physo130210.1;Parent=Physo130210;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 665973 666298 . + 0 ID=Physo130210;Parent=Physo130210;rank=2 scaffold_10 . exon 665973 666298 . + . ID=Physo130210.2;Parent=Physo130210;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 666419 666429 . + 0 ID=Physo130210;Parent=Physo130210;rank=3 scaffold_10 . exon 666419 666429 . + . ID=Physo130210.3;Parent=Physo130210;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 ensembl protein_coding_gene 667818 668711 . + . ID=Physo130211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100169;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 667818 668711 . + . ID=Physo130211;Parent=Physo130211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 667818 668711 . + 0 ID=Physo130211;Parent=Physo130211;rank=1 scaffold_10 . exon 667818 668711 . + . ID=Physo130211.1;Parent=Physo130211;constitutive=1;rank=1 scaffold_10 . repeat_region 669408 669488 . - . description=Sola3-2_PS scaffold_10 . repeat_region 676510 676559 . ? . description=dust scaffold_10 ensembl protein_coding_gene 668778 676289 . - . ID=Physo130212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100170;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 668778 676289 . - . ID=Physo130212;Parent=Physo130212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 668778 670822 . - 0 ID=Physo130212;Parent=Physo130212;rank=5 scaffold_10 . exon 668778 670822 . - . ID=Physo130212.5;Parent=Physo130212;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 670857 671982 . - 0 ID=Physo130212;Parent=Physo130212;rank=4 scaffold_10 . exon 670857 671982 . - . ID=Physo130212.4;Parent=Physo130212;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 673076 674058 . - 0 ID=Physo130212;Parent=Physo130212;rank=3 scaffold_10 . exon 673076 674058 . - . ID=Physo130212.3;Parent=Physo130212;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 674211 675542 . - 0 ID=Physo130212;Parent=Physo130212;rank=2 scaffold_10 . exon 674211 675542 . - . ID=Physo130212.2;Parent=Physo130212;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 675575 676289 . - 0 ID=Physo130212;Parent=Physo130212;rank=1 scaffold_10 . exon 675575 676289 . - . ID=Physo130212.1;Parent=Physo130212;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . biological_region 680276 680277 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 680800 684002 . - . ID=Physo130213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100171;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 680800 684002 . - . ID=Physo130213;Parent=Physo130213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 680800 682747 . - 0 ID=Physo130213;Parent=Physo130213;rank=2 scaffold_10 . exon 680800 682747 . - . ID=Physo130213.2;Parent=Physo130213;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 682774 684002 . - 0 ID=Physo130213;Parent=Physo130213;rank=1 scaffold_10 . exon 682774 684002 . - . ID=Physo130213.1;Parent=Physo130213;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 685224 687028 . - . ID=Physo130214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100172;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 685224 687028 . - . ID=Physo130214;Parent=Physo130214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 685224 685640 . - 0 ID=Physo130214;Parent=Physo130214;rank=2 scaffold_10 . exon 685224 685640 . - . ID=Physo130214.2;Parent=Physo130214;constitutive=1;rank=2 scaffold_10 . CDS 685685 687028 . - 0 ID=Physo130214;Parent=Physo130214;rank=1 scaffold_10 . exon 685685 687028 . - . ID=Physo130214.1;Parent=Physo130214;constitutive=1;rank=1 scaffold_10 . repeat_region 690154 690228 . ? . description=trf scaffold_10 . repeat_region 691238 691309 . ? . description=trf scaffold_10 . repeat_region 692939 692991 . ? . description=dust scaffold_10 . repeat_region 694132 694162 . ? . description=trf scaffold_10 . repeat_region 694133 694163 . ? . description=dust scaffold_10 . repeat_region 694167 694240 . ? . description=trf scaffold_10 . repeat_region 694281 694424 . + . description=(CAG)n scaffold_10 . repeat_region 694298 694325 . ? . description=trf scaffold_10 . repeat_region 694388 694424 . ? . description=dust scaffold_10 . repeat_region 694388 694424 . ? . description=trf scaffold_10 ensembl protein_coding_gene 693690 695045 . + . ID=Physo156051;biotype=protein_coding;external_name=C_scaffold_10000070;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 693690 695045 . + . ID=Physo156051;Parent=Physo156051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 693690 694740 . + 0 ID=Physo156051;Parent=Physo156051;rank=1 scaffold_10 . exon 693690 694740 . + . ID=Physo156051.1;Parent=Physo156051;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 694807 695045 . + 0 ID=Physo156051;Parent=Physo156051;rank=2 scaffold_10 . exon 694807 695045 . + . ID=Physo156051.2;Parent=Physo156051;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 695619 697423 . - . ID=Physo156053;biotype=protein_coding;external_name=C_scaffold_10000072;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 695619 697423 . - . ID=Physo156053;Parent=Physo156053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 695619 695809 . - 0 ID=Physo156053;Parent=Physo156053;rank=6 scaffold_10 . exon 695619 695809 . - . ID=Physo156053.6;Parent=Physo156053;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_10 . CDS 695831 695878 . - 0 ID=Physo156053;Parent=Physo156053;rank=5 scaffold_10 . exon 695831 695878 . - . ID=Physo156053.5;Parent=Physo156053;constitutive=1;rank=5 scaffold_10 . CDS 695946 696435 . - 0 ID=Physo156053;Parent=Physo156053;rank=4 scaffold_10 . exon 695946 696435 . - . ID=Physo156053.4;Parent=Physo156053;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 696487 696664 . - 0 ID=Physo156053;Parent=Physo156053;rank=3 scaffold_10 . exon 696487 696664 . - . ID=Physo156053.3;Parent=Physo156053;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . CDS 696686 697196 . - 0 ID=Physo156053;Parent=Physo156053;rank=2 scaffold_10 . exon 696686 697196 . - . ID=Physo156053.2;Parent=Physo156053;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 697301 697423 . - 0 ID=Physo156053;Parent=Physo156053;rank=1 scaffold_10 . exon 697301 697423 . - . ID=Physo156053.1;Parent=Physo156053;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 697885 699703 . + . ID=Physo156055;biotype=protein_coding;external_name=C_scaffold_10000074;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 697885 699703 . + . ID=Physo156055;Parent=Physo156055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 697885 698239 . + . ID=Physo156055.1;Parent=Physo156055;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 697886 698239 . + 0 ID=Physo156055;Parent=Physo156055;rank=1 scaffold_10 . CDS 698264 698675 . + 0 ID=Physo156055;Parent=Physo156055;rank=2 scaffold_10 . CDS 698744 698978 . + 0 ID=Physo156055;Parent=Physo156055;rank=3 scaffold_10 . CDS 699068 699151 . + 0 ID=Physo156055;Parent=Physo156055;rank=4 scaffold_10 . CDS 699215 699409 . + 0 ID=Physo156055;Parent=Physo156055;rank=5 scaffold_10 . CDS 699474 699639 . + 0 ID=Physo156055;Parent=Physo156055;rank=6 scaffold_10 . CDS 699680 699703 . + 0 ID=Physo156055;Parent=Physo156055;rank=7 scaffold_10 . biological_region 702040 702044 0.999 + . logic_name=eponine scaffold_10 . biological_region 702212 702214 0.999 - . logic_name=eponine scaffold_10 . biological_region 703635 703638 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 704858 705766 . - . ID=Physo130220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100178;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 704858 705766 . - . ID=Physo130220;Parent=Physo130220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 704858 705766 . - 0 ID=Physo130220;Parent=Physo130220;rank=1 scaffold_10 . exon 704858 705766 . - . ID=Physo130220.1;Parent=Physo130220;constitutive=1;rank=1 scaffold_10 . exon 698264 698675 . + . ID=Physo156055.2;Parent=Physo156055;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . exon 698744 698978 . + . ID=Physo156055.3;Parent=Physo156055;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . exon 699068 699151 . + . ID=Physo156055.4;Parent=Physo156055;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_10 . exon 699215 699409 . + . ID=Physo156055.5;Parent=Physo156055;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_10 . exon 699474 699639 . + . ID=Physo156055.6;Parent=Physo156055;constitutive=1;ensembl_phase=2;rank=6 scaffold_10 . exon 699680 699703 . + . ID=Physo156055.7;Parent=Physo156055;constitutive=1;rank=7 scaffold_10 ensembl protein_coding_gene 699940 701443 . - . ID=Physo156057;biotype=protein_coding;external_name=C_scaffold_10000076;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 699940 701443 . - . ID=Physo156057;Parent=Physo156057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 699940 700071 . - 0 ID=Physo156057;Parent=Physo156057;rank=4 scaffold_10 . exon 699940 700071 . - . ID=Physo156057.4;Parent=Physo156057;constitutive=1;rank=4 scaffold_10 . CDS 700096 700788 . - 0 ID=Physo156057;Parent=Physo156057;rank=3 scaffold_10 . exon 700096 700788 . - . ID=Physo156057.3;Parent=Physo156057;constitutive=1;rank=3 scaffold_10 . CDS 700856 701032 . - 0 ID=Physo156057;Parent=Physo156057;rank=2 scaffold_10 . exon 700856 701032 . - . ID=Physo156057.2;Parent=Physo156057;constitutive=1;rank=2 scaffold_10 . CDS 701114 701443 . - 0 ID=Physo156057;Parent=Physo156057;rank=1 scaffold_10 . exon 701114 701443 . - . ID=Physo156057.1;Parent=Physo156057;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 702016 703289 . + . ID=Physo156058;biotype=protein_coding;external_name=C_scaffold_10000077;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 702016 703289 . + . ID=Physo156058;Parent=Physo156058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 702016 702282 . + 0 ID=Physo156058;Parent=Physo156058;rank=1 scaffold_10 . exon 702016 702282 . + . ID=Physo156058.1;Parent=Physo156058;constitutive=1;rank=1 scaffold_10 . CDS 702349 702769 . + 0 ID=Physo156058;Parent=Physo156058;rank=2 scaffold_10 . exon 702349 702769 . + . ID=Physo156058.2;Parent=Physo156058;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 702821 703289 . + 0 ID=Physo156058;Parent=Physo156058;rank=3 scaffold_10 . exon 702821 703289 . + . ID=Physo156058.3;Parent=Physo156058;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . repeat_region 709505 709518 . ? . description=dust scaffold_10 ensembl protein_coding_gene 713730 714713 . - . ID=Physo130221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100179;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 713730 714713 . - . ID=Physo130221;Parent=Physo130221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 713730 714713 . - 0 ID=Physo130221;Parent=Physo130221;rank=1 scaffold_10 . exon 713730 714713 . - . ID=Physo130221.1;Parent=Physo130221;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 716087 717411 . - . ID=Physo130222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100180;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 716087 717411 . - . ID=Physo130222;Parent=Physo130222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 716087 716801 . - 0 ID=Physo130222;Parent=Physo130222;rank=2 scaffold_10 . exon 716087 716801 . - . ID=Physo130222.2;Parent=Physo130222;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 716873 717411 . - 0 ID=Physo130222;Parent=Physo130222;rank=1 scaffold_10 . exon 716873 717411 . - . ID=Physo130222.1;Parent=Physo130222;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 717737 719691 . + . ID=Physo130223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100181;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 717737 719691 . + . ID=Physo130223;Parent=Physo130223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 717737 718070 . + 0 ID=Physo130223;Parent=Physo130223;rank=1 scaffold_10 . exon 717737 718070 . + . ID=Physo130223.1;Parent=Physo130223;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 718136 718364 . + 0 ID=Physo130223;Parent=Physo130223;rank=2 scaffold_10 . exon 718136 718364 . + . ID=Physo130223.2;Parent=Physo130223;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . CDS 718540 718726 . + 0 ID=Physo130223;Parent=Physo130223;rank=3 scaffold_10 . CDS 718804 719691 . + 0 ID=Physo130223;Parent=Physo130223;rank=4 scaffold_10 . repeat_region 718530 718559 . ? . description=trf scaffold_10 . biological_region 719501 719504 0.999 + . logic_name=eponine scaffold_10 . biological_region 720247 720251 0.999 + . logic_name=eponine scaffold_10 . repeat_region 720401 720421 . ? . description=trf scaffold_10 . biological_region 721381 721383 0.999 + . logic_name=eponine scaffold_10 . biological_region 721709 721713 0.999 + . logic_name=eponine scaffold_10 . biological_region 722036 722036 0.999 + . logic_name=eponine scaffold_10 . repeat_region 722457 722480 . ? . description=trf scaffold_10 . repeat_region 722517 722593 . ? . description=trf scaffold_10 . biological_region 722684 722689 0.999 - . logic_name=eponine scaffold_10 . biological_region 723135 723136 0.999 - . logic_name=eponine scaffold_10 . biological_region 723569 723569 0.999 + . logic_name=eponine scaffold_10 . biological_region 723575 723578 0.999 - . logic_name=eponine scaffold_10 . biological_region 724687 724688 0.999 + . logic_name=eponine scaffold_10 . biological_region 724693 724698 0.999 + . logic_name=eponine scaffold_10 . biological_region 724724 724724 0.999 + . logic_name=eponine scaffold_10 . biological_region 724740 724740 0.999 - . logic_name=eponine scaffold_10 . biological_region 724742 724746 0.999 + . logic_name=eponine scaffold_10 . biological_region 724766 724769 0.999 - . logic_name=eponine scaffold_10 . biological_region 724808 724813 0.999 - . logic_name=eponine scaffold_10 . biological_region 724832 724834 0.999 - . logic_name=eponine scaffold_10 . biological_region 725035 725039 0.999 - . logic_name=eponine scaffold_10 . biological_region 726631 726641 0.999 - . logic_name=eponine scaffold_10 . biological_region 726691 726694 0.999 + . logic_name=eponine scaffold_10 . biological_region 726814 726816 0.999 - . logic_name=eponine scaffold_10 . biological_region 727517 727524 0.999 + . logic_name=eponine scaffold_10 . biological_region 727526 727532 0.999 - . logic_name=eponine scaffold_10 . exon 718540 718726 . + . ID=Physo130223.3;Parent=Physo130223;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . exon 718804 719691 . + . ID=Physo130223.4;Parent=Physo130223;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 720260 723184 . - . ID=Physo130224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100182;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 720260 723184 . - . ID=Physo130224;Parent=Physo130224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 720260 723184 . - 0 ID=Physo130224;Parent=Physo130224;rank=1 scaffold_10 . exon 720260 723184 . - . ID=Physo130224.1;Parent=Physo130224;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 723447 725039 . - . ID=Physo130225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100183;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 723447 725039 . - . ID=Physo130225;Parent=Physo130225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 723447 725039 . - 0 ID=Physo130225;Parent=Physo130225;rank=1 scaffold_10 . exon 723447 725039 . - . ID=Physo130225.1;Parent=Physo130225;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 725999 726999 . + . ID=Physo130226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100184;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 725999 726999 . + . ID=Physo130226;Parent=Physo130226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 725999 726634 . + 0 ID=Physo130226;Parent=Physo130226;rank=1 scaffold_10 . exon 725999 726634 . + . ID=Physo130226.1;Parent=Physo130226;constitutive=1;rank=1 scaffold_10 . CDS 726713 726781 . + 0 ID=Physo130226;Parent=Physo130226;rank=2 scaffold_10 . exon 726713 726781 . + . ID=Physo130226.2;Parent=Physo130226;constitutive=1;rank=2 scaffold_10 . CDS 726853 726999 . + 0 ID=Physo130226;Parent=Physo130226;rank=3 scaffold_10 . exon 726853 726999 . + . ID=Physo130226.3;Parent=Physo130226;constitutive=1;rank=3 scaffold_10 ensembl protein_coding_gene 727134 727920 . - . ID=Physo130227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100185;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 727134 727920 . - . ID=Physo130227;Parent=Physo130227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 727134 727920 . - . ID=Physo130227.1;Parent=Physo130227;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_10 . CDS 727261 727920 . - 0 ID=Physo130227;Parent=Physo130227;rank=1 scaffold_10 . repeat_region 729951 729960 . ? . description=dust scaffold_10 . repeat_region 730122 730129 . ? . description=dust scaffold_10 . repeat_region 732974 733017 . ? . description=dust scaffold_10 ensembl protein_coding_gene 732614 734143 . + . ID=Physo130228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100186;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 732614 734143 . + . ID=Physo130228;Parent=Physo130228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 732614 732939 . + 0 ID=Physo130228;Parent=Physo130228;rank=1 scaffold_10 . exon 732614 732939 . + . ID=Physo130228.1;Parent=Physo130228;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 733024 733765 . + 0 ID=Physo130228;Parent=Physo130228;rank=2 scaffold_10 . exon 733024 734143 . + . ID=Physo130228.2;Parent=Physo130228;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_10 ensembl protein_coding_gene 735334 736506 . + . ID=Physo130229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100187;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 735334 736506 . + . ID=Physo130229;Parent=Physo130229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 735334 736506 . + 0 ID=Physo130229;Parent=Physo130229;rank=1 scaffold_10 . exon 735334 736506 . + . ID=Physo130229.1;Parent=Physo130229;constitutive=1;rank=1 scaffold_10 . biological_region 741899 741902 0.999 - . logic_name=eponine scaffold_10 . biological_region 741984 741986 0.999 + . logic_name=eponine scaffold_10 . biological_region 742042 742046 0.999 + . logic_name=eponine scaffold_10 . biological_region 742412 742417 0.999 - . logic_name=eponine scaffold_10 . repeat_region 743101 743201 . + . description=(CGA)n scaffold_10 . repeat_region 743136 743171 . ? . description=trf scaffold_10 . repeat_region 743140 743201 . ? . description=trf scaffold_10 . biological_region 743198 743202 0.999 - . logic_name=eponine scaffold_10 . biological_region 743933 743935 0.999 - . logic_name=eponine scaffold_10 . biological_region 744174 744175 0.999 + . logic_name=eponine scaffold_10 . biological_region 745153 745155 0.999 - . logic_name=eponine scaffold_10 . biological_region 745446 745448 0.999 - . logic_name=eponine scaffold_10 . repeat_region 745550 745575 . ? . description=trf scaffold_10 . biological_region 745826 745831 0.999 + . logic_name=eponine scaffold_10 . repeat_region 746455 746482 . ? . description=trf scaffold_10 . repeat_region 746458 746481 . ? . description=trf scaffold_10 ensembl protein_coding_gene 744788 746173 . + . ID=Physo112641;biotype=protein_coding;external_name=estExt_Genewise1.C_100087;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 744788 746173 . + . ID=Physo112641;Parent=Physo112641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 744788 745492 . + . ID=Physo112641.1;Parent=Physo112641;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 744809 745492 . + 0 ID=Physo112641;Parent=Physo112641;rank=1 scaffold_10 . CDS 745607 746173 . + 0 ID=Physo112641;Parent=Physo112641;rank=2 scaffold_10 . exon 745607 746173 . + . ID=Physo112641.2;Parent=Physo112641;constitutive=1;rank=2 scaffold_10 ensembl protein_coding_gene 742681 744372 . + . ID=Physo130230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100188;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 742681 744372 . + . ID=Physo130230;Parent=Physo130230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 742681 744372 . + 0 ID=Physo130230;Parent=Physo130230;rank=1 scaffold_10 . exon 742681 744372 . + . ID=Physo130230.1;Parent=Physo130230;constitutive=1;rank=1 scaffold_10 . repeat_region 750499 750507 . ? . description=dust scaffold_10 . repeat_region 750751 750778 . ? . description=dust scaffold_10 ensembl protein_coding_gene 751140 753452 . + . ID=Physo112647;biotype=protein_coding;external_name=estExt_Genewise1.C_100093;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 751140 753452 . + . ID=Physo112647;Parent=Physo112647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 751140 751741 . + . ID=Physo112647.1;Parent=Physo112647;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_10 . CDS 751332 751741 . + 0 ID=Physo112647;Parent=Physo112647;rank=1 scaffold_10 . CDS 751805 752075 . + 0 ID=Physo112647;Parent=Physo112647;rank=2 scaffold_10 . exon 751805 752075 . + . ID=Physo112647.2;Parent=Physo112647;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 752895 753452 . + 0 ID=Physo112647;Parent=Physo112647;rank=3 scaffold_10 . exon 752895 753452 . + . ID=Physo112647.3;Parent=Physo112647;constitutive=1;rank=3 scaffold_10 ensembl protein_coding_gene 753879 755194 . + . ID=Physo130234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100192;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 753879 755194 . + . ID=Physo130234;Parent=Physo130234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 753879 753930 . + 0 ID=Physo130234;Parent=Physo130234;rank=1 scaffold_10 . exon 753879 753930 . + . ID=Physo130234.1;Parent=Physo130234;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 754005 754100 . + 0 ID=Physo130234;Parent=Physo130234;rank=2 scaffold_10 . exon 754005 754100 . + . ID=Physo130234.2;Parent=Physo130234;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 754170 755194 . + 0 ID=Physo130234;Parent=Physo130234;rank=3 scaffold_10 . exon 754170 755194 . + . ID=Physo130234.3;Parent=Physo130234;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 ensembl protein_coding_gene 757671 758837 . - . ID=Physo130236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100194;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 757671 758837 . - . ID=Physo130236;Parent=Physo130236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 757671 757923 . - . ID=Physo130236.4;Parent=Physo130236;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_10 . CDS 757907 757923 . - 0 ID=Physo130236;Parent=Physo130236;rank=4 scaffold_10 . CDS 758001 758414 . - 0 ID=Physo130236;Parent=Physo130236;rank=3 scaffold_10 . exon 758001 758414 . - . ID=Physo130236.3;Parent=Physo130236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 758494 758611 . - 0 ID=Physo130236;Parent=Physo130236;rank=2 scaffold_10 . CDS 758712 758837 . - 0 ID=Physo130236;Parent=Physo130236;rank=1 scaffold_10 . biological_region 759098 759104 0.999 + . logic_name=eponine scaffold_10 . biological_region 759149 759154 0.999 + . logic_name=eponine scaffold_10 . repeat_region 759312 759341 . ? . description=trf scaffold_10 . biological_region 759422 759429 0.999 - . logic_name=eponine scaffold_10 . biological_region 760680 760690 0.999 + . logic_name=eponine scaffold_10 . biological_region 760802 760804 0.999 + . logic_name=eponine scaffold_10 . biological_region 760914 760915 0.999 - . logic_name=eponine scaffold_10 . biological_region 763915 763920 0.999 + . logic_name=eponine scaffold_10 . biological_region 763947 763948 0.999 - . logic_name=eponine scaffold_10 . repeat_region 765726 765788 . ? . description=trf scaffold_10 . biological_region 765947 765953 0.999 + . logic_name=eponine scaffold_10 . biological_region 765975 765975 0.999 - . logic_name=eponine scaffold_10 . biological_region 765995 765998 0.999 + . logic_name=eponine scaffold_10 . biological_region 766655 766657 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 759163 760323 . + . ID=Physo108456;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100015;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 759163 760323 . + . ID=Physo108456;Parent=Physo108456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 759163 760323 . + 0 ID=Physo108456;Parent=Physo108456;rank=1 scaffold_10 . exon 759163 760323 . + . ID=Physo108456.1;Parent=Physo108456;constitutive=1;rank=1 scaffold_10 . exon 758494 758611 . - . ID=Physo130236.2;Parent=Physo130236;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . exon 758712 758837 . - . ID=Physo130236.1;Parent=Physo130236;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 760611 761408 . + . ID=Physo130238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100196;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 760611 761408 . + . ID=Physo130238;Parent=Physo130238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 760611 761408 . + 0 ID=Physo130238;Parent=Physo130238;rank=1 scaffold_10 . exon 760611 761408 . + . ID=Physo130238.1;Parent=Physo130238;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 763604 765016 . + . ID=Physo130239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100197;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 763604 765016 . + . ID=Physo130239;Parent=Physo130239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 763604 763894 . + 0 ID=Physo130239;Parent=Physo130239;rank=1 scaffold_10 . exon 763604 763894 . + . ID=Physo130239.1;Parent=Physo130239;constitutive=1;rank=1 scaffold_10 . CDS 764038 764495 . + 0 ID=Physo130239;Parent=Physo130239;rank=2 scaffold_10 . exon 764038 764495 . + . ID=Physo130239.2;Parent=Physo130239;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 764689 765016 . + 0 ID=Physo130239;Parent=Physo130239;rank=3 scaffold_10 . exon 764689 765016 . + . ID=Physo130239.3;Parent=Physo130239;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 ensembl protein_coding_gene 765805 769317 . + . ID=Physo130240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100198;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 765805 769317 . + . ID=Physo130240;Parent=Physo130240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 765805 769317 . + 0 ID=Physo130240;Parent=Physo130240;rank=1 scaffold_10 . exon 765805 769317 . + . ID=Physo130240.1;Parent=Physo130240;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 769410 771686 . - . ID=Physo130241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100199;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 769410 771686 . - . ID=Physo130241;Parent=Physo130241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 769410 771686 . - 0 ID=Physo130241;Parent=Physo130241;rank=1 scaffold_10 . exon 769410 771686 . - . ID=Physo130241.1;Parent=Physo130241;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 773272 775892 . - . ID=Physo130242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100200;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 773272 775892 . - . ID=Physo130242;Parent=Physo130242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 773272 774117 . - 0 ID=Physo130242;Parent=Physo130242;rank=4 scaffold_10 . exon 773272 774117 . - . ID=Physo130242.4;Parent=Physo130242;constitutive=1;rank=4 scaffold_10 . CDS 774231 774286 . - 0 ID=Physo130242;Parent=Physo130242;rank=3 scaffold_10 . exon 774231 774286 . - . ID=Physo130242.3;Parent=Physo130242;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 774357 774438 . - 0 ID=Physo130242;Parent=Physo130242;rank=2 scaffold_10 . exon 774357 774438 . - . ID=Physo130242.2;Parent=Physo130242;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 774519 775892 . - 0 ID=Physo130242;Parent=Physo130242;rank=1 scaffold_10 . exon 774519 775892 . - . ID=Physo130242.1;Parent=Physo130242;constitutive=1;rank=1 scaffold_10 . repeat_region 781010 781024 . ? . description=dust scaffold_10 . biological_region 782256 782261 0.999 - . logic_name=eponine scaffold_10 . repeat_region 782779 782818 . ? . description=trf scaffold_10 . biological_region 787413 787416 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 778224 780182 . - . ID=Physo130243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100201;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 778224 780182 . - . ID=Physo130243;Parent=Physo130243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 778224 780182 . - 0 ID=Physo130243;Parent=Physo130243;rank=1 scaffold_10 . exon 778224 780182 . - . ID=Physo130243.1;Parent=Physo130243;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 782163 783683 . + . ID=Physo130244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100202;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 782163 783683 . + . ID=Physo130244;Parent=Physo130244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 782163 783683 . + 0 ID=Physo130244;Parent=Physo130244;rank=1 scaffold_10 . exon 782163 783683 . + . ID=Physo130244.1;Parent=Physo130244;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 786856 787689 . + . ID=Physo130245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100203;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 786856 787689 . + . ID=Physo130245;Parent=Physo130245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 786856 787689 . + 0 ID=Physo130245;Parent=Physo130245;rank=1 scaffold_10 . exon 786856 787689 . + . ID=Physo130245.1;Parent=Physo130245;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 788338 789075 . + . ID=Physo130246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100204;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 788338 789075 . + . ID=Physo130246;Parent=Physo130246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 788338 789075 . + 0 ID=Physo130246;Parent=Physo130246;rank=1 scaffold_10 . exon 788338 789075 . + . ID=Physo130246.1;Parent=Physo130246;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 789307 790557 . - . ID=Physo130247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100205;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 789307 790557 . - . ID=Physo130247;Parent=Physo130247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 789307 790557 . - 0 ID=Physo130247;Parent=Physo130247;rank=1 scaffold_10 . exon 789307 790557 . - . ID=Physo130247.1;Parent=Physo130247;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 792389 793782 . + . ID=Physo130248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100206;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 792389 793782 . + . ID=Physo130248;Parent=Physo130248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 792389 793345 . + 0 ID=Physo130248;Parent=Physo130248;rank=1 scaffold_10 . exon 792389 793345 . + . ID=Physo130248.1;Parent=Physo130248;constitutive=1;rank=1 scaffold_10 . CDS 793414 793421 . + 0 ID=Physo130248;Parent=Physo130248;rank=2 scaffold_10 . exon 793414 793421 . + . ID=Physo130248.2;Parent=Physo130248;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 793635 793782 . + 0 ID=Physo130248;Parent=Physo130248;rank=3 scaffold_10 . exon 793635 793782 . + . ID=Physo130248.3;Parent=Physo130248;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 ensembl protein_coding_gene 794297 794791 . + . ID=Physo130249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100207;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 794297 794791 . + . ID=Physo130249;Parent=Physo130249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 794297 794791 . + 0 ID=Physo130249;Parent=Physo130249;rank=1 scaffold_10 . exon 794297 794791 . + . ID=Physo130249.1;Parent=Physo130249;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 794988 800881 . - . ID=Physo156067;biotype=protein_coding;external_name=C_scaffold_10000086;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 794988 800881 . - . ID=Physo156067;Parent=Physo156067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 794988 795539 . - 0 ID=Physo156067;Parent=Physo156067;rank=13 scaffold_10 . exon 794988 795539 . - . ID=Physo156067.13;Parent=Physo156067;constitutive=1;rank=13 scaffold_10 . CDS 795611 795676 . - 0 ID=Physo156067;Parent=Physo156067;rank=12 scaffold_10 . exon 795611 795676 . - . ID=Physo156067.12;Parent=Physo156067;constitutive=1;rank=12 scaffold_10 . CDS 795968 796203 . - 0 ID=Physo156067;Parent=Physo156067;rank=11 scaffold_10 . exon 795968 796203 . - . ID=Physo156067.11;Parent=Physo156067;constitutive=1;ensembl_phase=1;rank=11 scaffold_10 . CDS 796303 796410 . - 0 ID=Physo156067;Parent=Physo156067;rank=10 scaffold_10 . exon 796303 796410 . - . ID=Physo156067.10;Parent=Physo156067;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_10 . CDS 796630 796898 . - 0 ID=Physo156067;Parent=Physo156067;rank=9 scaffold_10 . exon 796630 796898 . - . ID=Physo156067.9;Parent=Physo156067;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_10 . CDS 796932 797093 . - 0 ID=Physo156067;Parent=Physo156067;rank=8 scaffold_10 . exon 796932 797093 . - . ID=Physo156067.8;Parent=Physo156067;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_10 . CDS 797331 797584 . - 0 ID=Physo156067;Parent=Physo156067;rank=7 scaffold_10 . exon 797331 797584 . - . ID=Physo156067.7;Parent=Physo156067;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_10 . CDS 797704 798161 . - 0 ID=Physo156067;Parent=Physo156067;rank=6 scaffold_10 . exon 797704 798161 . - . ID=Physo156067.6;Parent=Physo156067;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 798216 798981 . - 0 ID=Physo156067;Parent=Physo156067;rank=5 scaffold_10 . CDS 799144 799544 . - 0 ID=Physo156067;Parent=Physo156067;rank=4 scaffold_10 . CDS 799622 799940 . - 0 ID=Physo156067;Parent=Physo156067;rank=3 scaffold_10 . CDS 800006 800150 . - 0 ID=Physo156067;Parent=Physo156067;rank=2 scaffold_10 . CDS 800616 800881 . - 0 ID=Physo156067;Parent=Physo156067;rank=1 scaffold_10 . biological_region 805783 805785 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 804075 805103 . + . ID=Physo130251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100209;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 804075 805103 . + . ID=Physo130251;Parent=Physo130251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 804075 805103 . + 0 ID=Physo130251;Parent=Physo130251;rank=1 scaffold_10 . exon 804075 805103 . + . ID=Physo130251.1;Parent=Physo130251;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 805201 806855 . - . ID=Physo130252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100210;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 805201 806855 . - . ID=Physo130252;Parent=Physo130252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 805201 806152 . - 0 ID=Physo130252;Parent=Physo130252;rank=3 scaffold_10 . exon 805201 806152 . - . ID=Physo130252.3;Parent=Physo130252;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 806230 806402 . - 0 ID=Physo130252;Parent=Physo130252;rank=2 scaffold_10 . exon 806230 806402 . - . ID=Physo130252.2;Parent=Physo130252;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 806490 806855 . - 0 ID=Physo130252;Parent=Physo130252;rank=1 scaffold_10 . exon 806490 806855 . - . ID=Physo130252.1;Parent=Physo130252;constitutive=1;rank=1 scaffold_10 . exon 798216 798981 . - . ID=Physo156067.5;Parent=Physo156067;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . exon 799144 799544 . - . ID=Physo156067.4;Parent=Physo156067;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . exon 799622 799940 . - . ID=Physo156067.3;Parent=Physo156067;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . exon 800006 800150 . - . ID=Physo156067.2;Parent=Physo156067;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . exon 800616 800881 . - . ID=Physo156067.1;Parent=Physo156067;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 807032 809570 . - . ID=Physo156068;biotype=protein_coding;external_name=C_scaffold_10000087;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 807032 809570 . - . ID=Physo156068;Parent=Physo156068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 807032 807277 . - 0 ID=Physo156068;Parent=Physo156068;rank=7 scaffold_10 . exon 807032 807277 . - . ID=Physo156068.7;Parent=Physo156068;constitutive=1;rank=7 scaffold_10 . CDS 807340 807474 . - 0 ID=Physo156068;Parent=Physo156068;rank=6 scaffold_10 . exon 807340 807474 . - . ID=Physo156068.6;Parent=Physo156068;constitutive=1;rank=6 scaffold_10 . CDS 807560 807946 . - 0 ID=Physo156068;Parent=Physo156068;rank=5 scaffold_10 . exon 807560 807946 . - . ID=Physo156068.5;Parent=Physo156068;constitutive=1;rank=5 scaffold_10 . CDS 808013 808194 . - 0 ID=Physo156068;Parent=Physo156068;rank=4 scaffold_10 . CDS 808675 809102 . - 0 ID=Physo156068;Parent=Physo156068;rank=3 scaffold_10 . CDS 809127 809275 . - 0 ID=Physo156068;Parent=Physo156068;rank=2 scaffold_10 . CDS 809364 809570 . - 0 ID=Physo156068;Parent=Physo156068;rank=1 scaffold_10 . repeat_region 815112 815119 . ? . description=dust scaffold_10 . repeat_region 815941 815965 . ? . description=trf scaffold_10 . repeat_region 816858 816904 . ? . description=trf scaffold_10 . repeat_region 817773 817819 . ? . description=trf scaffold_10 ensembl protein_coding_gene 814522 815769 . + . ID=Physo108458;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100017;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 814522 815769 . + . ID=Physo108458;Parent=Physo108458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 814522 814563 . + 0 ID=Physo108458;Parent=Physo108458;rank=1 scaffold_10 . exon 814522 814563 . + . ID=Physo108458.1;Parent=Physo108458;constitutive=1;rank=1 scaffold_10 . CDS 814592 814876 . + 0 ID=Physo108458;Parent=Physo108458;rank=2 scaffold_10 . exon 814592 814876 . + . ID=Physo108458.2;Parent=Physo108458;constitutive=1;rank=2 scaffold_10 . CDS 815125 815200 . + 0 ID=Physo108458;Parent=Physo108458;rank=3 scaffold_10 . exon 815125 815200 . + . ID=Physo108458.3;Parent=Physo108458;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 815284 815426 . + 0 ID=Physo108458;Parent=Physo108458;rank=4 scaffold_10 . exon 815284 815426 . + . ID=Physo108458.4;Parent=Physo108458;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 815500 815659 . + 0 ID=Physo108458;Parent=Physo108458;rank=5 scaffold_10 . exon 815500 815659 . + . ID=Physo108458.5;Parent=Physo108458;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_10 . CDS 815744 815769 . + 0 ID=Physo108458;Parent=Physo108458;rank=6 scaffold_10 . exon 815744 815769 . + . ID=Physo108458.6;Parent=Physo108458;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 ensembl protein_coding_gene 810220 812163 . + . ID=Physo130254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100212;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 810220 812163 . + . ID=Physo130254;Parent=Physo130254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 810220 810305 . + 0 ID=Physo130254;Parent=Physo130254;rank=1 scaffold_10 . exon 810220 810305 . + . ID=Physo130254.1;Parent=Physo130254;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 810441 810627 . + 0 ID=Physo130254;Parent=Physo130254;rank=2 scaffold_10 . exon 810441 810627 . + . ID=Physo130254.2;Parent=Physo130254;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 810700 811433 . + 0 ID=Physo130254;Parent=Physo130254;rank=3 scaffold_10 . exon 810700 811433 . + . ID=Physo130254.3;Parent=Physo130254;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 811506 812163 . + 0 ID=Physo130254;Parent=Physo130254;rank=4 scaffold_10 . exon 811506 812163 . + . ID=Physo130254.4;Parent=Physo130254;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 ensembl protein_coding_gene 812886 814310 . - . ID=Physo130255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100213;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 812886 814310 . - . ID=Physo130255;Parent=Physo130255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 812886 814310 . - 0 ID=Physo130255;Parent=Physo130255;rank=1 scaffold_10 . exon 812886 814310 . - . ID=Physo130255.1;Parent=Physo130255;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 817043 818297 . + . ID=Physo130257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100215;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 817043 818297 . + . ID=Physo130257;Parent=Physo130257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 817043 817484 . + 0 ID=Physo130257;Parent=Physo130257;rank=1 scaffold_10 . exon 817043 817484 . + . ID=Physo130257.1;Parent=Physo130257;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 817602 818006 . + 0 ID=Physo130257;Parent=Physo130257;rank=2 scaffold_10 . exon 817602 818006 . + . ID=Physo130257.2;Parent=Physo130257;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 818071 818297 . + 0 ID=Physo130257;Parent=Physo130257;rank=3 scaffold_10 . exon 808013 808194 . - . ID=Physo156068.4;Parent=Physo156068;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . exon 808675 809102 . - . ID=Physo156068.3;Parent=Physo156068;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . exon 809127 809275 . - . ID=Physo156068.2;Parent=Physo156068;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . exon 809364 809570 . - . ID=Physo156068.1;Parent=Physo156068;constitutive=1;rank=1 scaffold_10 . biological_region 820406 820407 0.999 - . logic_name=eponine scaffold_10 . biological_region 820434 820436 0.999 + . logic_name=eponine scaffold_10 . biological_region 823992 823994 0.999 - . logic_name=eponine scaffold_10 . biological_region 827635 827644 0.999 - . logic_name=eponine scaffold_10 . exon 818071 818297 . + . ID=Physo130257.3;Parent=Physo130257;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 ensembl protein_coding_gene 818351 820126 . - . ID=Physo130258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100216;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 818351 820126 . - . ID=Physo130258;Parent=Physo130258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 818351 820126 . - . ID=Physo130258.1;Parent=Physo130258;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 818481 820001 . - 0 ID=Physo130258;Parent=Physo130258;rank=1 scaffold_10 ensembl protein_coding_gene 822352 823824 . + . ID=Physo130259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100217;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 822352 823824 . + . ID=Physo130259;Parent=Physo130259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 822352 822667 . + . ID=Physo130259.1;Parent=Physo130259;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_10 . CDS 822534 822667 . + 0 ID=Physo130259;Parent=Physo130259;rank=1 scaffold_10 . CDS 822752 822891 . + 0 ID=Physo130259;Parent=Physo130259;rank=2 scaffold_10 . exon 822752 822891 . + . ID=Physo130259.2;Parent=Physo130259;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 823014 823118 . + 0 ID=Physo130259;Parent=Physo130259;rank=3 scaffold_10 . exon 823014 823118 . + . ID=Physo130259.3;Parent=Physo130259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 823197 823256 . + 0 ID=Physo130259;Parent=Physo130259;rank=4 scaffold_10 . exon 823197 823256 . + . ID=Physo130259.4;Parent=Physo130259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 823400 823543 . + 0 ID=Physo130259;Parent=Physo130259;rank=5 scaffold_10 . exon 823400 823543 . + . ID=Physo130259.5;Parent=Physo130259;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 823613 823824 . + 0 ID=Physo130259;Parent=Physo130259;rank=6 scaffold_10 . exon 823613 823824 . + . ID=Physo130259.6;Parent=Physo130259;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 ensembl protein_coding_gene 827120 827671 . + . ID=Physo130260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100218;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 827120 827671 . + . ID=Physo130260;Parent=Physo130260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 827120 827671 . + 0 ID=Physo130260;Parent=Physo130260;rank=1 scaffold_10 . exon 827120 827671 . + . ID=Physo130260.1;Parent=Physo130260;constitutive=1;rank=1 scaffold_10 . repeat_region 832026 832052 . ? . description=trf scaffold_10 ensembl protein_coding_gene 827935 829337 . - . ID=Physo130261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100219;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 827935 829337 . - . ID=Physo130261;Parent=Physo130261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 827935 828278 . - 0 ID=Physo130261;Parent=Physo130261;rank=3 scaffold_10 . exon 827935 828278 . - . ID=Physo130261.3;Parent=Physo130261;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 828352 828514 . - 0 ID=Physo130261;Parent=Physo130261;rank=2 scaffold_10 . exon 828352 828514 . - . ID=Physo130261.2;Parent=Physo130261;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 828591 829337 . - 0 ID=Physo130261;Parent=Physo130261;rank=1 scaffold_10 . exon 828591 829337 . - . ID=Physo130261.1;Parent=Physo130261;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 832228 832881 . - . ID=Physo130262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100220;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 832228 832881 . - . ID=Physo130262;Parent=Physo130262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 832228 832881 . - 0 ID=Physo130262;Parent=Physo130262;rank=1 scaffold_10 . exon 832228 832881 . - . ID=Physo130262.1;Parent=Physo130262;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 835105 836638 . + . ID=Physo130263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100221;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 835105 836638 . + . ID=Physo130263;Parent=Physo130263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 835105 835584 . + 0 ID=Physo130263;Parent=Physo130263;rank=1 scaffold_10 . exon 835105 835584 . + . ID=Physo130263.1;Parent=Physo130263;constitutive=1;rank=1 scaffold_10 . CDS 835655 835822 . + 0 ID=Physo130263;Parent=Physo130263;rank=2 scaffold_10 . exon 835655 835822 . + . ID=Physo130263.2;Parent=Physo130263;constitutive=1;rank=2 scaffold_10 . CDS 835892 836638 . + 0 ID=Physo130263;Parent=Physo130263;rank=3 scaffold_10 . exon 835892 836638 . + . ID=Physo130263.3;Parent=Physo130263;constitutive=1;rank=3 scaffold_10 ensembl protein_coding_gene 836842 837918 . - . ID=Physo130264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100222;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 836842 837918 . - . ID=Physo130264;Parent=Physo130264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 836842 837918 . - 0 ID=Physo130264;Parent=Physo130264;rank=1 scaffold_10 . exon 836842 837918 . - . ID=Physo130264.1;Parent=Physo130264;constitutive=1;rank=1 scaffold_10 . repeat_region 841126 841149 . ? . description=dust scaffold_10 . biological_region 841396 841408 0.999 - . logic_name=eponine scaffold_10 . biological_region 841482 841483 0.999 + . logic_name=eponine scaffold_10 . biological_region 841495 841498 0.999 + . logic_name=eponine scaffold_10 . biological_region 841571 841573 0.999 - . logic_name=eponine scaffold_10 . biological_region 841606 841612 0.999 - . logic_name=eponine scaffold_10 . biological_region 844580 844585 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 845490 846541 . + . ID=Physo108459;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100018;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 845490 846541 . + . ID=Physo108459;Parent=Physo108459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 845490 846146 . + . ID=Physo108459.1;Parent=Physo108459;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 845502 846146 . + 0 ID=Physo108459;Parent=Physo108459;rank=1 scaffold_10 . CDS 846264 846347 . + 0 ID=Physo108459;Parent=Physo108459;rank=2 scaffold_10 . exon 846264 846541 . + . ID=Physo108459.2;Parent=Physo108459;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_10 ensembl protein_coding_gene 841784 842530 . + . ID=Physo130266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100224;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 841784 842530 . + . ID=Physo130266;Parent=Physo130266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 841784 841912 . + 0 ID=Physo130266;Parent=Physo130266;rank=1 scaffold_10 . exon 841784 841912 . + . ID=Physo130266.1;Parent=Physo130266;constitutive=1;rank=1 scaffold_10 . CDS 841995 842472 . + 0 ID=Physo130266;Parent=Physo130266;rank=2 scaffold_10 . exon 841995 842472 . + . ID=Physo130266.2;Parent=Physo130266;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 842505 842530 . + 0 ID=Physo130266;Parent=Physo130266;rank=3 scaffold_10 . exon 842505 842530 . + . ID=Physo130266.3;Parent=Physo130266;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 ensembl protein_coding_gene 843714 844955 . - . ID=Physo130267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100225;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 843714 844955 . - . ID=Physo130267;Parent=Physo130267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 843714 844955 . - 0 ID=Physo130267;Parent=Physo130267;rank=1 scaffold_10 . exon 843714 844955 . - . ID=Physo130267.1;Parent=Physo130267;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 846869 849442 . - . ID=Physo130269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100227;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 846869 849442 . - . ID=Physo130269;Parent=Physo130269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 846869 849130 . - 0 ID=Physo130269;Parent=Physo130269;rank=2 scaffold_10 . exon 846869 849130 . - . ID=Physo130269.2;Parent=Physo130269;constitutive=1;rank=2 scaffold_10 . CDS 849218 849442 . - 0 ID=Physo130269;Parent=Physo130269;rank=1 scaffold_10 ensembl protein_coding_gene 840424 841586 . - . ID=Physo156070;biotype=protein_coding;external_name=C_scaffold_10000089;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 840424 841586 . - . ID=Physo156070;Parent=Physo156070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 840424 840552 . - 0 ID=Physo156070;Parent=Physo156070;rank=3 scaffold_10 . exon 840424 840552 . - . ID=Physo156070.3;Parent=Physo156070;constitutive=1;rank=3 scaffold_10 . CDS 840663 840976 . - 0 ID=Physo156070;Parent=Physo156070;rank=2 scaffold_10 . exon 840663 840976 . - . ID=Physo156070.2;Parent=Physo156070;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 841016 841586 . - 0 ID=Physo156070;Parent=Physo156070;rank=1 scaffold_10 . exon 841016 841586 . - . ID=Physo156070.1;Parent=Physo156070;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . exon 849218 849442 . - . ID=Physo130269.1;Parent=Physo130269;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 850482 851732 . + . ID=Physo130270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100228;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 850482 851732 . + . ID=Physo130270;Parent=Physo130270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 850482 851732 . + 0 ID=Physo130270;Parent=Physo130270;rank=1 scaffold_10 . exon 850482 851732 . + . ID=Physo130270.1;Parent=Physo130270;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 854287 855472 . - . ID=Physo130271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100229;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 854287 855472 . - . ID=Physo130271;Parent=Physo130271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 854287 855331 . - 0 ID=Physo130271;Parent=Physo130271;rank=2 scaffold_10 . exon 854287 855331 . - . ID=Physo130271.2;Parent=Physo130271;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 855405 855472 . - 0 ID=Physo130271;Parent=Physo130271;rank=1 scaffold_10 . exon 855405 855472 . - . ID=Physo130271.1;Parent=Physo130271;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 853799 854068 . + . ID=Physo156074;biotype=protein_coding;external_name=C_scaffold_10000093;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 853799 854068 . + . ID=Physo156074;Parent=Physo156074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 853799 854068 . + 0 ID=Physo156074;Parent=Physo156074;rank=1 scaffold_10 . exon 853799 854068 . + . ID=Physo156074.1;Parent=Physo156074;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 855770 858171 . - . ID=Physo156076;biotype=protein_coding;external_name=C_scaffold_10000095;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 855770 858171 . - . ID=Physo156076;Parent=Physo156076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 855770 856028 . - 0 ID=Physo156076;Parent=Physo156076;rank=4 scaffold_10 . exon 855770 856028 . - . ID=Physo156076.4;Parent=Physo156076;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 856118 856671 . - 0 ID=Physo156076;Parent=Physo156076;rank=3 scaffold_10 . exon 856118 856671 . - . ID=Physo156076.3;Parent=Physo156076;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 856753 857833 . - 0 ID=Physo156076;Parent=Physo156076;rank=2 scaffold_10 . exon 856753 857833 . - . ID=Physo156076.2;Parent=Physo156076;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 857912 858171 . - 0 ID=Physo156076;Parent=Physo156076;rank=1 scaffold_10 . biological_region 858083 858088 0.999 - . logic_name=eponine scaffold_10 . biological_region 858675 858676 0.999 + . logic_name=eponine scaffold_10 . biological_region 858728 858734 0.999 + . logic_name=eponine scaffold_10 . biological_region 858825 858827 0.999 + . logic_name=eponine scaffold_10 . biological_region 858837 858842 0.999 + . logic_name=eponine scaffold_10 . biological_region 858936 858945 0.999 - . logic_name=eponine scaffold_10 . biological_region 859118 859120 0.999 + . logic_name=eponine scaffold_10 . biological_region 859221 859224 0.999 - . logic_name=eponine scaffold_10 . biological_region 859228 859235 0.999 + . logic_name=eponine scaffold_10 . biological_region 859237 859241 0.999 - . logic_name=eponine scaffold_10 . biological_region 859483 859488 0.999 - . logic_name=eponine scaffold_10 . biological_region 860526 860534 0.999 - . logic_name=eponine scaffold_10 . biological_region 861623 861626 0.999 - . logic_name=eponine scaffold_10 . repeat_region 864079 864087 . ? . description=dust scaffold_10 . biological_region 865139 865143 0.999 - . logic_name=eponine scaffold_10 ensembl protein_coding_gene 867722 868914 . - . ID=Physo112685;biotype=protein_coding;external_name=estExt_Genewise1.C_100131;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 867722 868914 . - . ID=Physo112685;Parent=Physo112685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 867722 867778 . - 0 ID=Physo112685;Parent=Physo112685;rank=4 scaffold_10 . exon 867722 867778 . - . ID=Physo112685.4;Parent=Physo112685;constitutive=1;rank=4 scaffold_10 . CDS 867860 867982 . - 0 ID=Physo112685;Parent=Physo112685;rank=3 scaffold_10 . CDS 868058 868300 . - 0 ID=Physo112685;Parent=Physo112685;rank=2 scaffold_10 . CDS 868372 868911 . - 0 ID=Physo112685;Parent=Physo112685;rank=1 scaffold_10 ensembl protein_coding_gene 860307 863933 . + . ID=Physo130273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100231;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 860307 863933 . + . ID=Physo130273;Parent=Physo130273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 860307 860630 . + 0 ID=Physo130273;Parent=Physo130273;rank=1 scaffold_10 . exon 860307 860630 . + . ID=Physo130273.1;Parent=Physo130273;constitutive=1;rank=1 scaffold_10 . CDS 860654 860784 . + 0 ID=Physo130273;Parent=Physo130273;rank=2 scaffold_10 . exon 860654 860784 . + . ID=Physo130273.2;Parent=Physo130273;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 860869 861086 . + 0 ID=Physo130273;Parent=Physo130273;rank=3 scaffold_10 . exon 860869 861086 . + . ID=Physo130273.3;Parent=Physo130273;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 861445 863762 . + 0 ID=Physo130273;Parent=Physo130273;rank=4 scaffold_10 . exon 861445 863762 . + . ID=Physo130273.4;Parent=Physo130273;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 863838 863933 . + 0 ID=Physo130273;Parent=Physo130273;rank=5 scaffold_10 . exon 863838 863933 . + . ID=Physo130273.5;Parent=Physo130273;constitutive=1;rank=5 scaffold_10 ensembl protein_coding_gene 864227 865388 . + . ID=Physo130274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100232;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 864227 865388 . + . ID=Physo130274;Parent=Physo130274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 864227 864295 . + 0 ID=Physo130274;Parent=Physo130274;rank=1 scaffold_10 . exon 864227 864295 . + . ID=Physo130274.1;Parent=Physo130274;constitutive=1;rank=1 scaffold_10 . CDS 864442 864626 . + 0 ID=Physo130274;Parent=Physo130274;rank=2 scaffold_10 . exon 864442 864626 . + . ID=Physo130274.2;Parent=Physo130274;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 864707 865388 . + 0 ID=Physo130274;Parent=Physo130274;rank=3 scaffold_10 . exon 864707 865388 . + . ID=Physo130274.3;Parent=Physo130274;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 ensembl protein_coding_gene 866923 867538 . + . ID=Physo130275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100233;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 866923 867538 . + . ID=Physo130275;Parent=Physo130275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 866923 867415 . + 0 ID=Physo130275;Parent=Physo130275;rank=1 scaffold_10 . exon 866923 867415 . + . ID=Physo130275.1;Parent=Physo130275;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 867478 867536 . + 0 ID=Physo130275;Parent=Physo130275;rank=2 scaffold_10 . exon 867478 867538 . + . ID=Physo130275.2;Parent=Physo130275;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_10 . exon 857912 858171 . - . ID=Physo156076.1;Parent=Physo156076;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 858561 859580 . - . ID=Physo156077;biotype=protein_coding;external_name=C_scaffold_10000096;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 858561 859580 . - . ID=Physo156077;Parent=Physo156077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 858561 859580 . - 0 ID=Physo156077;Parent=Physo156077;rank=1 scaffold_10 . exon 858561 859580 . - . ID=Physo156077.1;Parent=Physo156077;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 869570 871249 . - . ID=Physo108461;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100020;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 869570 871249 . - . ID=Physo108461;Parent=Physo108461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 869570 871249 . - 0 ID=Physo108461;Parent=Physo108461;rank=1 scaffold_10 . exon 869570 871249 . - . ID=Physo108461.1;Parent=Physo108461;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 871625 873292 . + . ID=Physo108462;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100021;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 871625 873292 . + . ID=Physo108462;Parent=Physo108462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 871625 872026 . + 0 ID=Physo108462;Parent=Physo108462;rank=1 scaffold_10 . exon 871625 872026 . + . ID=Physo108462.1;Parent=Physo108462;constitutive=1;rank=1 scaffold_10 . CDS 872162 872411 . + 0 ID=Physo108462;Parent=Physo108462;rank=2 scaffold_10 . exon 872162 872411 . + . ID=Physo108462.2;Parent=Physo108462;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 872487 872557 . + 0 ID=Physo108462;Parent=Physo108462;rank=3 scaffold_10 . exon 872487 872557 . + . ID=Physo108462.3;Parent=Physo108462;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 872618 872964 . + 0 ID=Physo108462;Parent=Physo108462;rank=4 scaffold_10 . exon 872618 872964 . + . ID=Physo108462.4;Parent=Physo108462;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 873034 873292 . + 0 ID=Physo108462;Parent=Physo108462;rank=5 scaffold_10 . exon 873034 873292 . + . ID=Physo108462.5;Parent=Physo108462;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . exon 867860 867982 . - . ID=Physo112685.3;Parent=Physo112685;constitutive=1;rank=3 scaffold_10 . exon 868058 868300 . - . ID=Physo112685.2;Parent=Physo112685;constitutive=1;rank=2 scaffold_10 . exon 868372 868914 . - . ID=Physo112685.1;Parent=Physo112685;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 876614 877668 . - . ID=Physo130279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100237;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 876614 877668 . - . ID=Physo130279;Parent=Physo130279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 876614 876936 . - 0 ID=Physo130279;Parent=Physo130279;rank=4 scaffold_10 . exon 876614 876936 . - . ID=Physo130279.4;Parent=Physo130279;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 877017 877064 . - 0 ID=Physo130279;Parent=Physo130279;rank=3 scaffold_10 . exon 877017 877064 . - . ID=Physo130279.3;Parent=Physo130279;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 877354 877489 . - 0 ID=Physo130279;Parent=Physo130279;rank=2 scaffold_10 . exon 877354 877489 . - . ID=Physo130279.2;Parent=Physo130279;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 877555 877668 . - 0 ID=Physo130279;Parent=Physo130279;rank=1 scaffold_10 . exon 877555 877668 . - . ID=Physo130279.1;Parent=Physo130279;constitutive=1;rank=1 scaffold_10 . biological_region 877832 877835 0.999 - . logic_name=eponine scaffold_10 . biological_region 878311 878315 0.999 + . logic_name=eponine scaffold_10 . biological_region 878336 878338 0.999 + . logic_name=eponine scaffold_10 . biological_region 878361 878364 0.999 + . logic_name=eponine scaffold_10 . biological_region 879064 879067 0.999 - . logic_name=eponine scaffold_10 . biological_region 879080 879084 0.999 - . logic_name=eponine scaffold_10 . biological_region 879102 879105 0.999 - . logic_name=eponine scaffold_10 . biological_region 879127 879133 0.999 - . logic_name=eponine scaffold_10 . biological_region 879156 879160 0.999 - . logic_name=eponine scaffold_10 . biological_region 879251 879253 0.999 + . logic_name=eponine scaffold_10 . biological_region 879358 879363 0.999 + . logic_name=eponine scaffold_10 . biological_region 879374 879380 0.999 - . logic_name=eponine scaffold_10 . biological_region 880977 880981 0.999 + . logic_name=eponine scaffold_10 . biological_region 881478 881480 0.999 - . logic_name=eponine scaffold_10 . biological_region 882992 882993 0.999 - . logic_name=eponine scaffold_10 . biological_region 883184 883187 0.999 + . logic_name=eponine scaffold_10 . biological_region 883297 883304 0.999 - . logic_name=eponine scaffold_10 . repeat_region 887758 887818 . ? . description=dust scaffold_10 . repeat_region 887758 887819 . ? . description=trf scaffold_10 . repeat_region 887758 887819 . ? . description=trf scaffold_10 ensembl protein_coding_gene 878946 880139 . + . ID=Physo130280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100238;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 878946 880139 . + . ID=Physo130280;Parent=Physo130280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 878946 879801 . + 0 ID=Physo130280;Parent=Physo130280;rank=1 scaffold_10 . exon 878946 879801 . + . ID=Physo130280.1;Parent=Physo130280;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 879880 880139 . + 0 ID=Physo130280;Parent=Physo130280;rank=2 scaffold_10 . exon 879880 880139 . + . ID=Physo130280.2;Parent=Physo130280;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 ensembl protein_coding_gene 882356 883345 . - . ID=Physo130283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100241;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 882356 883345 . - . ID=Physo130283;Parent=Physo130283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 882356 883083 . - . ID=Physo130283.2;Parent=Physo130283;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_10 . CDS 882464 883083 . - 0 ID=Physo130283;Parent=Physo130283;rank=2 scaffold_10 . CDS 883178 883292 . - 0 ID=Physo130283;Parent=Physo130283;rank=1 scaffold_10 . exon 883178 883345 . - . ID=Physo130283.1;Parent=Physo130283;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 883588 886182 . - . ID=Physo130284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100242;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 883588 886182 . - . ID=Physo130284;Parent=Physo130284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 883588 884176 . - 0 ID=Physo130284;Parent=Physo130284;rank=7 scaffold_10 . exon 883588 884176 . - . ID=Physo130284.7;Parent=Physo130284;constitutive=1;ensembl_phase=2;rank=7 scaffold_10 . CDS 884219 884295 . - 0 ID=Physo130284;Parent=Physo130284;rank=6 scaffold_10 . exon 884219 884295 . - . ID=Physo130284.6;Parent=Physo130284;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_10 . CDS 884362 885463 . - 0 ID=Physo130284;Parent=Physo130284;rank=5 scaffold_10 . exon 884362 885463 . - . ID=Physo130284.5;Parent=Physo130284;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 885534 885570 . - 0 ID=Physo130284;Parent=Physo130284;rank=4 scaffold_10 . exon 885534 885570 . - . ID=Physo130284.4;Parent=Physo130284;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_10 . CDS 885637 885743 . - 0 ID=Physo130284;Parent=Physo130284;rank=3 scaffold_10 . exon 885637 885743 . - . ID=Physo130284.3;Parent=Physo130284;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 885816 885883 . - 0 ID=Physo130284;Parent=Physo130284;rank=2 scaffold_10 . exon 885816 885883 . - . ID=Physo130284.2;Parent=Physo130284;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 885979 886182 . - 0 ID=Physo130284;Parent=Physo130284;rank=1 scaffold_10 . exon 885979 886182 . - . ID=Physo130284.1;Parent=Physo130284;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 886412 887645 . - . ID=Physo130285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100243;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 886412 887645 . - . ID=Physo130285;Parent=Physo130285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 886412 886535 . - . ID=Physo130285.8;Parent=Physo130285;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_10 . CDS 886488 886535 . - 0 ID=Physo130285;Parent=Physo130285;rank=8 scaffold_10 . CDS 886615 886659 . - 0 ID=Physo130285;Parent=Physo130285;rank=7 scaffold_10 . exon 886615 886659 . - . ID=Physo130285.7;Parent=Physo130285;constitutive=1;rank=7 scaffold_10 . CDS 886742 886793 . - 0 ID=Physo130285;Parent=Physo130285;rank=6 scaffold_10 . exon 886742 886793 . - . ID=Physo130285.6;Parent=Physo130285;constitutive=1;ensembl_phase=2;rank=6 scaffold_10 . CDS 886878 886955 . - 0 ID=Physo130285;Parent=Physo130285;rank=5 scaffold_10 . exon 886878 886955 . - . ID=Physo130285.5;Parent=Physo130285;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_10 . CDS 887028 887089 . - 0 ID=Physo130285;Parent=Physo130285;rank=4 scaffold_10 . exon 887028 887089 . - . ID=Physo130285.4;Parent=Physo130285;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 887161 887246 . - 0 ID=Physo130285;Parent=Physo130285;rank=3 scaffold_10 . exon 887161 887246 . - . ID=Physo130285.3;Parent=Physo130285;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 887333 887492 . - 0 ID=Physo130285;Parent=Physo130285;rank=2 scaffold_10 . exon 887333 887492 . - . ID=Physo130285.2;Parent=Physo130285;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 887620 887628 . - 0 ID=Physo130285;Parent=Physo130285;rank=1 scaffold_10 . exon 887620 887645 . - . ID=Physo130285.1;Parent=Physo130285;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 880295 881083 . - . ID=Physo156080;biotype=protein_coding;external_name=C_scaffold_10000099;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 880295 881083 . - . ID=Physo156080;Parent=Physo156080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 880295 880413 . - 0 ID=Physo156080;Parent=Physo156080;rank=4 scaffold_10 . exon 880295 880413 . - . ID=Physo156080.4;Parent=Physo156080;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 880498 880629 . - 0 ID=Physo156080;Parent=Physo156080;rank=3 scaffold_10 . exon 880498 880629 . - . ID=Physo156080.3;Parent=Physo156080;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 880719 880850 . - 0 ID=Physo156080;Parent=Physo156080;rank=2 scaffold_10 . exon 880719 880850 . - . ID=Physo156080.2;Parent=Physo156080;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 880921 881083 . - 0 ID=Physo156080;Parent=Physo156080;rank=1 scaffold_10 . exon 880921 881083 . - . ID=Physo156080.1;Parent=Physo156080;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 881236 882131 . + . ID=Physo156081;biotype=protein_coding;external_name=C_scaffold_10000100;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 881236 882131 . + . ID=Physo156081;Parent=Physo156081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 881236 881670 . + 0 ID=Physo156081;Parent=Physo156081;rank=1 scaffold_10 . exon 881236 881670 . + . ID=Physo156081.1;Parent=Physo156081;constitutive=1;rank=1 scaffold_10 . CDS 881747 881912 . + 0 ID=Physo156081;Parent=Physo156081;rank=2 scaffold_10 . exon 881747 881912 . + . ID=Physo156081.2;Parent=Physo156081;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 881996 882102 . + 0 ID=Physo156081;Parent=Physo156081;rank=3 scaffold_10 . exon 881996 882102 . + . ID=Physo156081.3;Parent=Physo156081;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 882129 882131 . + 0 ID=Physo156081;Parent=Physo156081;rank=4 scaffold_10 . exon 882129 882131 . + . ID=Physo156081.4;Parent=Physo156081;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 892665 893678 . + . ID=Physo108463;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100022;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 892665 893678 . + . ID=Physo108463;Parent=Physo108463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 892665 893678 . + . ID=Physo108463.1;Parent=Physo108463;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 892667 893566 . + 0 ID=Physo108463;Parent=Physo108463;rank=1 scaffold_10 ensembl protein_coding_gene 887928 891196 . - . ID=Physo130286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100244;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 887928 891196 . - . ID=Physo130286;Parent=Physo130286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 887928 888240 . - 0 ID=Physo130286;Parent=Physo130286;rank=8 scaffold_10 . exon 887928 888240 . - . ID=Physo130286.8;Parent=Physo130286;constitutive=1;ensembl_phase=2;rank=8 scaffold_10 . CDS 888319 888560 . - 0 ID=Physo130286;Parent=Physo130286;rank=7 scaffold_10 . exon 888319 888560 . - . ID=Physo130286.7;Parent=Physo130286;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_10 . CDS 888626 889177 . - 0 ID=Physo130286;Parent=Physo130286;rank=6 scaffold_10 . exon 888626 889177 . - . ID=Physo130286.6;Parent=Physo130286;constitutive=1;rank=6 scaffold_10 . CDS 889251 889620 . - 0 ID=Physo130286;Parent=Physo130286;rank=5 scaffold_10 . exon 889251 889620 . - . ID=Physo130286.5;Parent=Physo130286;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 889693 889782 . - 0 ID=Physo130286;Parent=Physo130286;rank=4 scaffold_10 . exon 889693 889782 . - . ID=Physo130286.4;Parent=Physo130286;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_10 . CDS 889857 889910 . - 0 ID=Physo130286;Parent=Physo130286;rank=3 scaffold_10 . exon 889857 889910 . - . ID=Physo130286.3;Parent=Physo130286;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 889982 890259 . - 0 ID=Physo130286;Parent=Physo130286;rank=2 scaffold_10 . exon 889982 890259 . - . ID=Physo130286.2;Parent=Physo130286;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 890330 891196 . - 0 ID=Physo130286;Parent=Physo130286;rank=1 scaffold_10 . exon 890330 891196 . - . ID=Physo130286.1;Parent=Physo130286;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 893701 895959 . - . ID=Physo130288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100246;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 893701 895959 . - . ID=Physo130288;Parent=Physo130288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 893701 893831 . - 0 ID=Physo130288;Parent=Physo130288;rank=7 scaffold_10 . exon 893701 893831 . - . ID=Physo130288.7;Parent=Physo130288;constitutive=1;ensembl_phase=1;rank=7 scaffold_10 . CDS 893868 893991 . - 0 ID=Physo130288;Parent=Physo130288;rank=6 scaffold_10 . exon 893868 893991 . - . ID=Physo130288.6;Parent=Physo130288;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_10 . CDS 894069 894702 . - 0 ID=Physo130288;Parent=Physo130288;rank=5 scaffold_10 . exon 894069 894702 . - . ID=Physo130288.5;Parent=Physo130288;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 894793 894887 . - 0 ID=Physo130288;Parent=Physo130288;rank=4 scaffold_10 . exon 894793 894887 . - . ID=Physo130288.4;Parent=Physo130288;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_10 . CDS 895065 895264 . - 0 ID=Physo130288;Parent=Physo130288;rank=3 scaffold_10 . exon 895065 895264 . - . ID=Physo130288.3;Parent=Physo130288;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 895335 895843 . - 0 ID=Physo130288;Parent=Physo130288;rank=2 scaffold_10 . exon 895335 895843 . - . ID=Physo130288.2;Parent=Physo130288;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 895937 895959 . - 0 ID=Physo130288;Parent=Physo130288;rank=1 scaffold_10 . exon 895937 895959 . - . ID=Physo130288.1;Parent=Physo130288;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 896255 897407 . + . ID=Physo130289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100247;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 896255 897407 . + . ID=Physo130289;Parent=Physo130289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 896255 896555 . + 0 ID=Physo130289;Parent=Physo130289;rank=1 scaffold_10 . exon 896255 896555 . + . ID=Physo130289.1;Parent=Physo130289;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 . CDS 896691 897020 . + 0 ID=Physo130289;Parent=Physo130289;rank=2 scaffold_10 . exon 896691 897020 . + . ID=Physo130289.2;Parent=Physo130289;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 897079 897407 . + 0 ID=Physo130289;Parent=Physo130289;rank=3 scaffold_10 . exon 897079 897407 . + . ID=Physo130289.3;Parent=Physo130289;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . biological_region 901946 901947 0.999 - . logic_name=eponine scaffold_10 . biological_region 902002 902002 0.999 + . logic_name=eponine scaffold_10 . biological_region 902446 902449 0.999 + . logic_name=eponine scaffold_10 . biological_region 902520 902524 0.999 - . logic_name=eponine scaffold_10 . repeat_region 902772 902809 . ? . description=trf scaffold_10 . repeat_region 902781 902828 . ? . description=dust scaffold_10 ensembl protein_coding_gene 900367 901158 . - . ID=Physo108464;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100023;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 900367 901158 . - . ID=Physo108464;Parent=Physo108464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 900367 901152 . - 0 ID=Physo108464;Parent=Physo108464;rank=1 scaffold_10 . exon 900367 901158 . - . ID=Physo108464.1;Parent=Physo108464;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 903281 912160 . - . ID=Physo112706;biotype=protein_coding;external_name=estExt_Genewise1.C_100152;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 903281 912160 . - . ID=Physo112706;Parent=Physo112706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 903281 911740 . - 0 ID=Physo112706;Parent=Physo112706;rank=2 scaffold_10 . exon 903281 911740 . - . ID=Physo112706.2;Parent=Physo112706;constitutive=1;rank=2 scaffold_10 . CDS 912002 912142 . - 0 ID=Physo112706;Parent=Physo112706;rank=1 scaffold_10 ensembl protein_coding_gene 898885 900114 . - . ID=Physo130290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100248;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 898885 900114 . - . ID=Physo130290;Parent=Physo130290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 898885 899349 . - 0 ID=Physo130290;Parent=Physo130290;rank=2 scaffold_10 . exon 898885 899349 . - . ID=Physo130290.2;Parent=Physo130290;constitutive=1;rank=2 scaffold_10 . CDS 899425 900114 . - 0 ID=Physo130290;Parent=Physo130290;rank=1 scaffold_10 . exon 899425 900114 . - . ID=Physo130290.1;Parent=Physo130290;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 902432 903022 . + . ID=Physo130292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100250;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 902432 903022 . + . ID=Physo130292;Parent=Physo130292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 902432 903022 . + 0 ID=Physo130292;Parent=Physo130292;rank=1 scaffold_10 . exon 902432 903022 . + . ID=Physo130292.1;Parent=Physo130292;constitutive=1;rank=1 scaffold_10 . exon 912002 912160 . - . ID=Physo112706.1;Parent=Physo112706;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 916505 917605 . + . ID=Physo130298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100256;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 916505 917605 . + . ID=Physo130298;Parent=Physo130298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 916505 916641 . + 0 ID=Physo130298;Parent=Physo130298;rank=1 scaffold_10 . exon 916505 916641 . + . ID=Physo130298.1;Parent=Physo130298;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 916731 917166 . + 0 ID=Physo130298;Parent=Physo130298;rank=2 scaffold_10 . exon 916731 917166 . + . ID=Physo130298.2;Parent=Physo130298;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 917239 917313 . + 0 ID=Physo130298;Parent=Physo130298;rank=3 scaffold_10 . exon 917239 917313 . + . ID=Physo130298.3;Parent=Physo130298;constitutive=1;rank=3 scaffold_10 . CDS 917392 917437 . + 0 ID=Physo130298;Parent=Physo130298;rank=4 scaffold_10 . exon 917392 917437 . + . ID=Physo130298.4;Parent=Physo130298;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 917509 917603 . + 0 ID=Physo130298;Parent=Physo130298;rank=5 scaffold_10 . exon 917509 917605 . + . ID=Physo130298.5;Parent=Physo130298;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_10 . biological_region 920208 920210 0.999 - . logic_name=eponine scaffold_10 . biological_region 921022 921024 0.999 + . logic_name=eponine scaffold_10 . biological_region 921102 921107 0.999 - . logic_name=eponine scaffold_10 . repeat_region 921186 921212 . ? . description=trf scaffold_10 . biological_region 921618 921627 0.999 + . logic_name=eponine scaffold_10 . biological_region 921644 921644 0.999 + . logic_name=eponine scaffold_10 . biological_region 921645 921650 0.999 - . logic_name=eponine scaffold_10 . biological_region 921913 921918 0.999 + . logic_name=eponine scaffold_10 . biological_region 921995 922001 0.999 + . logic_name=eponine scaffold_10 . biological_region 922062 922068 0.999 + . logic_name=eponine scaffold_10 . biological_region 922793 922795 0.999 - . logic_name=eponine scaffold_10 . biological_region 922830 922831 0.999 + . logic_name=eponine scaffold_10 . repeat_region 923401 923441 . ? . description=trf scaffold_10 . biological_region 923597 923597 0.999 + . logic_name=eponine scaffold_10 . repeat_region 923686 923729 . ? . description=dust scaffold_10 . biological_region 923801 923801 0.999 + . logic_name=eponine scaffold_10 . biological_region 927186 927186 0.999 + . logic_name=eponine scaffold_10 . biological_region 927567 927567 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 917842 920810 . - . ID=Physo130299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100257;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 917842 920810 . - . ID=Physo130299;Parent=Physo130299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 917842 918489 . - 0 ID=Physo130299;Parent=Physo130299;rank=5 scaffold_10 . exon 917842 918489 . - . ID=Physo130299.5;Parent=Physo130299;constitutive=1;rank=5 scaffold_10 . CDS 918569 918660 . - 0 ID=Physo130299;Parent=Physo130299;rank=4 scaffold_10 . exon 918569 918660 . - . ID=Physo130299.4;Parent=Physo130299;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 918733 919710 . - 0 ID=Physo130299;Parent=Physo130299;rank=3 scaffold_10 . exon 918733 919710 . - . ID=Physo130299.3;Parent=Physo130299;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 919800 920314 . - 0 ID=Physo130299;Parent=Physo130299;rank=2 scaffold_10 . exon 919800 920314 . - . ID=Physo130299.2;Parent=Physo130299;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 920383 920810 . - 0 ID=Physo130299;Parent=Physo130299;rank=1 scaffold_10 . exon 920383 920810 . - . ID=Physo130299.1;Parent=Physo130299;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 921531 922196 . - . ID=Physo130300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100258;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 921531 922196 . - . ID=Physo130300;Parent=Physo130300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 921531 922196 . - 0 ID=Physo130300;Parent=Physo130300;rank=1 scaffold_10 . exon 921531 922196 . - . ID=Physo130300.1;Parent=Physo130300;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 925963 927360 . - . ID=Physo130302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100260;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 925963 927360 . - . ID=Physo130302;Parent=Physo130302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 925963 927032 . - 0 ID=Physo130302;Parent=Physo130302;rank=2 scaffold_10 . exon 925963 927032 . - . ID=Physo130302.2;Parent=Physo130302;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 927165 927360 . - 0 ID=Physo130302;Parent=Physo130302;rank=1 scaffold_10 . exon 927165 927360 . - . ID=Physo130302.1;Parent=Physo130302;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 923512 925870 . + . ID=Physo156084;biotype=protein_coding;external_name=C_scaffold_10000103;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 923512 925870 . + . ID=Physo156084;Parent=Physo156084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 923512 923619 . + 0 ID=Physo156084;Parent=Physo156084;rank=1 scaffold_10 . exon 923512 923619 . + . ID=Physo156084.1;Parent=Physo156084;constitutive=1;rank=1 scaffold_10 . CDS 923735 923954 . + 0 ID=Physo156084;Parent=Physo156084;rank=2 scaffold_10 . exon 923735 923954 . + . ID=Physo156084.2;Parent=Physo156084;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 924049 924125 . + 0 ID=Physo156084;Parent=Physo156084;rank=3 scaffold_10 . exon 924049 924125 . + . ID=Physo156084.3;Parent=Physo156084;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 924193 924325 . + 0 ID=Physo156084;Parent=Physo156084;rank=4 scaffold_10 . exon 924193 924325 . + . ID=Physo156084.4;Parent=Physo156084;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 924497 924723 . + 0 ID=Physo156084;Parent=Physo156084;rank=5 scaffold_10 . exon 924497 924723 . + . ID=Physo156084.5;Parent=Physo156084;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 924792 924831 . + 0 ID=Physo156084;Parent=Physo156084;rank=6 scaffold_10 . exon 924792 924831 . + . ID=Physo156084.6;Parent=Physo156084;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_10 . CDS 924893 924985 . + 0 ID=Physo156084;Parent=Physo156084;rank=7 scaffold_10 . exon 924893 924985 . + . ID=Physo156084.7;Parent=Physo156084;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_10 . CDS 925238 925383 . + 0 ID=Physo156084;Parent=Physo156084;rank=8 scaffold_10 . exon 925238 925383 . + . ID=Physo156084.8;Parent=Physo156084;constitutive=1;ensembl_phase=1;rank=8 scaffold_10 . CDS 925451 925576 . + 0 ID=Physo156084;Parent=Physo156084;rank=9 scaffold_10 . exon 925451 925576 . + . ID=Physo156084.9;Parent=Physo156084;constitutive=1;rank=9 scaffold_10 . CDS 925724 925870 . + 0 ID=Physo156084;Parent=Physo156084;rank=10 scaffold_10 . exon 925724 925870 . + . ID=Physo156084.10;Parent=Physo156084;constitutive=1;rank=10 scaffold_10 ensembl protein_coding_gene 933246 934260 . - . ID=Physo130306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100264;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 933246 934260 . - . ID=Physo130306;Parent=Physo130306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 933246 933449 . - 0 ID=Physo130306;Parent=Physo130306;rank=5 scaffold_10 . exon 933246 933449 . - . ID=Physo130306.5;Parent=Physo130306;constitutive=1;rank=5 scaffold_10 . CDS 933532 933752 . - 0 ID=Physo130306;Parent=Physo130306;rank=4 scaffold_10 . exon 933532 933752 . - . ID=Physo130306.4;Parent=Physo130306;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 933847 933895 . - 0 ID=Physo130306;Parent=Physo130306;rank=3 scaffold_10 . exon 933847 933895 . - . ID=Physo130306.3;Parent=Physo130306;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 933982 934059 . - 0 ID=Physo130306;Parent=Physo130306;rank=2 scaffold_10 . exon 933982 934059 . - . ID=Physo130306.2;Parent=Physo130306;constitutive=1;rank=2 scaffold_10 . CDS 934156 934260 . - 0 ID=Physo130306;Parent=Physo130306;rank=1 scaffold_10 . exon 934156 934260 . - . ID=Physo130306.1;Parent=Physo130306;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 935317 938963 . - . ID=Physo130307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100265;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 935317 938963 . - . ID=Physo130307;Parent=Physo130307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 935317 935496 . - 0 ID=Physo130307;Parent=Physo130307;rank=8 scaffold_10 . exon 935317 935496 . - . ID=Physo130307.8;Parent=Physo130307;constitutive=1;rank=8 scaffold_10 . CDS 935625 936009 . - 0 ID=Physo130307;Parent=Physo130307;rank=7 scaffold_10 . exon 935625 936009 . - . ID=Physo130307.7;Parent=Physo130307;constitutive=1;ensembl_phase=2;rank=7 scaffold_10 . CDS 936078 936179 . - 0 ID=Physo130307;Parent=Physo130307;rank=6 scaffold_10 . exon 936078 936179 . - . ID=Physo130307.6;Parent=Physo130307;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_10 . CDS 936344 936515 . - 0 ID=Physo130307;Parent=Physo130307;rank=5 scaffold_10 . exon 936344 936515 . - . ID=Physo130307.5;Parent=Physo130307;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_10 . CDS 936717 937189 . - 0 ID=Physo130307;Parent=Physo130307;rank=4 scaffold_10 . exon 936717 937189 . - . ID=Physo130307.4;Parent=Physo130307;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 937385 938155 . - 0 ID=Physo130307;Parent=Physo130307;rank=3 scaffold_10 . exon 937385 938155 . - . ID=Physo130307.3;Parent=Physo130307;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_10 . CDS 938470 938863 . - 0 ID=Physo130307;Parent=Physo130307;rank=2 scaffold_10 . CDS 938891 938963 . - 0 ID=Physo130307;Parent=Physo130307;rank=1 scaffold_10 ensembl protein_coding_gene 928507 931704 . + . ID=Physo156085;biotype=protein_coding;external_name=C_scaffold_10000104;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 928507 931704 . + . ID=Physo156085;Parent=Physo156085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 928507 929136 . + 0 ID=Physo156085;Parent=Physo156085;rank=1 scaffold_10 . exon 928507 929136 . + . ID=Physo156085.1;Parent=Physo156085;constitutive=1;rank=1 scaffold_10 . CDS 929275 929951 . + 0 ID=Physo156085;Parent=Physo156085;rank=2 scaffold_10 . exon 929275 929951 . + . ID=Physo156085.2;Parent=Physo156085;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 930357 930876 . + 0 ID=Physo156085;Parent=Physo156085;rank=3 scaffold_10 . exon 930357 930876 . + . ID=Physo156085.3;Parent=Physo156085;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 930982 931704 . + 0 ID=Physo156085;Parent=Physo156085;rank=4 scaffold_10 . exon 930982 931704 . + . ID=Physo156085.4;Parent=Physo156085;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 931905 932831 . - . ID=Physo156086;biotype=protein_coding;external_name=C_scaffold_10000105;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 931905 932831 . - . ID=Physo156086;Parent=Physo156086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 931905 932831 . - 0 ID=Physo156086;Parent=Physo156086;rank=1 scaffold_10 . exon 931905 932831 . - . ID=Physo156086.1;Parent=Physo156086;constitutive=1;rank=1 scaffold_10 . biological_region 937947 937951 0.999 + . logic_name=eponine scaffold_10 . biological_region 938636 938641 0.999 - . logic_name=eponine scaffold_10 . biological_region 938691 938695 0.999 + . logic_name=eponine scaffold_10 . biological_region 938699 938703 0.999 - . logic_name=eponine scaffold_10 . biological_region 938771 938773 0.999 - . logic_name=eponine scaffold_10 . biological_region 938820 938824 0.999 - . logic_name=eponine scaffold_10 . biological_region 938918 938920 0.999 - . logic_name=eponine scaffold_10 . repeat_region 939934 940066 . ? . description=trf scaffold_10 . repeat_region 939934 940068 . ? . description=trf scaffold_10 . repeat_region 939964 940071 . ? . description=trf scaffold_10 . repeat_region 940001 940063 . ? . description=dust scaffold_10 . repeat_region 940434 940441 . ? . description=dust scaffold_10 . repeat_region 940819 940841 . ? . description=dust scaffold_10 . biological_region 943476 943479 0.999 + . logic_name=eponine scaffold_10 . biological_region 943859 943863 0.999 - . logic_name=eponine scaffold_10 . biological_region 944567 944570 0.999 - . logic_name=eponine scaffold_10 . biological_region 946098 946104 0.999 - . logic_name=eponine scaffold_10 . biological_region 946186 946189 0.999 + . logic_name=eponine scaffold_10 . exon 938470 938863 . - . ID=Physo130307.2;Parent=Physo130307;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_10 . exon 938891 938963 . - . ID=Physo130307.1;Parent=Physo130307;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 939593 940536 . - . ID=Physo130308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100266;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 939593 940536 . - . ID=Physo130308;Parent=Physo130308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 939593 939874 . - 0 ID=Physo130308;Parent=Physo130308;rank=3 scaffold_10 . exon 939593 939874 . - . ID=Physo130308.3;Parent=Physo130308;constitutive=1;rank=3 scaffold_10 . CDS 939950 940221 . - 0 ID=Physo130308;Parent=Physo130308;rank=2 scaffold_10 . exon 939950 940221 . - . ID=Physo130308.2;Parent=Physo130308;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 940506 940536 . - 0 ID=Physo130308;Parent=Physo130308;rank=1 scaffold_10 . exon 940506 940536 . - . ID=Physo130308.1;Parent=Physo130308;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 943399 944512 . - . ID=Physo130309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100267;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 943399 944512 . - . ID=Physo130309;Parent=Physo130309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 943399 943699 . - 0 ID=Physo130309;Parent=Physo130309;rank=4 scaffold_10 . exon 943399 943699 . - . ID=Physo130309.4;Parent=Physo130309;constitutive=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 943771 943912 . - 0 ID=Physo130309;Parent=Physo130309;rank=3 scaffold_10 . exon 943771 943912 . - . ID=Physo130309.3;Parent=Physo130309;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_10 . CDS 944094 944280 . - 0 ID=Physo130309;Parent=Physo130309;rank=2 scaffold_10 . exon 944094 944280 . - . ID=Physo130309.2;Parent=Physo130309;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 944339 944512 . - 0 ID=Physo130309;Parent=Physo130309;rank=1 scaffold_10 . exon 944339 944512 . - . ID=Physo130309.1;Parent=Physo130309;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 951600 952697 . + . ID=Physo130310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100268;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 951600 952697 . + . ID=Physo130310;Parent=Physo130310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 951600 952697 . + 0 ID=Physo130310;Parent=Physo130310;rank=1 scaffold_10 . exon 951600 952697 . + . ID=Physo130310.1;Parent=Physo130310;constitutive=1;rank=1 scaffold_10 . repeat_region 958071 958250 . - . description=GypsyPi-1c_LTR scaffold_10 . repeat_region 958755 958762 . ? . description=dust scaffold_10 . repeat_region 964139 964194 . ? . description=dust scaffold_10 . biological_region 964832 964835 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 961558 964641 . + . ID=Physo130311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100269;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 961558 964641 . + . ID=Physo130311;Parent=Physo130311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 961558 964641 . + 0 ID=Physo130311;Parent=Physo130311;rank=1 scaffold_10 . exon 961558 964641 . + . ID=Physo130311.1;Parent=Physo130311;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 964950 967784 . + . ID=Physo130312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100270;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 964950 967784 . + . ID=Physo130312;Parent=Physo130312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 964950 965807 . + 0 ID=Physo130312;Parent=Physo130312;rank=1 scaffold_10 . exon 964950 965807 . + . ID=Physo130312.1;Parent=Physo130312;constitutive=1;rank=1 scaffold_10 . CDS 965880 965995 . + 0 ID=Physo130312;Parent=Physo130312;rank=2 scaffold_10 . exon 965880 965995 . + . ID=Physo130312.2;Parent=Physo130312;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_10 . CDS 966069 967038 . + 0 ID=Physo130312;Parent=Physo130312;rank=3 scaffold_10 . exon 966069 967038 . + . ID=Physo130312.3;Parent=Physo130312;constitutive=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 967113 967553 . + 0 ID=Physo130312;Parent=Physo130312;rank=4 scaffold_10 . exon 967113 967784 . + . ID=Physo130312.4;Parent=Physo130312;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_10 ensembl protein_coding_gene 970617 971517 . + . ID=Physo130314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100272;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 970617 971517 . + . ID=Physo130314;Parent=Physo130314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 970617 970673 . + 0 ID=Physo130314;Parent=Physo130314;rank=1 scaffold_10 . exon 970617 970673 . + . ID=Physo130314.1;Parent=Physo130314;constitutive=1;rank=1 scaffold_10 . CDS 970697 970784 . + 0 ID=Physo130314;Parent=Physo130314;rank=2 scaffold_10 . exon 970697 970784 . + . ID=Physo130314.2;Parent=Physo130314;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 970847 970917 . + 0 ID=Physo130314;Parent=Physo130314;rank=3 scaffold_10 . exon 970847 970917 . + . ID=Physo130314.3;Parent=Physo130314;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 971004 971210 . + 0 ID=Physo130314;Parent=Physo130314;rank=4 scaffold_10 . exon 971004 971210 . + . ID=Physo130314.4;Parent=Physo130314;constitutive=1;rank=4 scaffold_10 . CDS 971297 971386 . + 0 ID=Physo130314;Parent=Physo130314;rank=5 scaffold_10 . exon 971297 971517 . + . ID=Physo130314.5;Parent=Physo130314;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_10 ensembl protein_coding_gene 975492 977524 . + . ID=Physo130317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100275;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 975492 977524 . + . ID=Physo130317;Parent=Physo130317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 975492 975829 . + 0 ID=Physo130317;Parent=Physo130317;rank=1 scaffold_10 . exon 975492 975829 . + . ID=Physo130317.1;Parent=Physo130317;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 975912 976056 . + 0 ID=Physo130317;Parent=Physo130317;rank=2 scaffold_10 . exon 975912 976056 . + . ID=Physo130317.2;Parent=Physo130317;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 976286 976359 . + 0 ID=Physo130317;Parent=Physo130317;rank=3 scaffold_10 . exon 976286 976359 . + . ID=Physo130317.3;Parent=Physo130317;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 976432 976532 . + 0 ID=Physo130317;Parent=Physo130317;rank=4 scaffold_10 . exon 976432 976532 . + . ID=Physo130317.4;Parent=Physo130317;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_10 . CDS 976608 976967 . + 0 ID=Physo130317;Parent=Physo130317;rank=5 scaffold_10 . exon 976608 976967 . + . ID=Physo130317.5;Parent=Physo130317;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 977028 977161 . + 0 ID=Physo130317;Parent=Physo130317;rank=6 scaffold_10 . exon 977028 977161 . + . ID=Physo130317.6;Parent=Physo130317;constitutive=1;ensembl_phase=1;rank=6 scaffold_10 . CDS 977226 977324 . + 0 ID=Physo130317;Parent=Physo130317;rank=7 scaffold_10 . exon 977226 977324 . + . ID=Physo130317.7;Parent=Physo130317;constitutive=1;rank=7 scaffold_10 . CDS 977399 977524 . + 0 ID=Physo130317;Parent=Physo130317;rank=8 scaffold_10 . exon 977399 977524 . + . ID=Physo130317.8;Parent=Physo130317;constitutive=1;rank=8 scaffold_10 ensembl protein_coding_gene 967799 968174 . - . ID=Physo156089;biotype=protein_coding;external_name=C_scaffold_10000108;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 967799 968174 . - . ID=Physo156089;Parent=Physo156089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 967799 967876 . - 0 ID=Physo156089;Parent=Physo156089;rank=2 scaffold_10 . exon 967799 967876 . - . ID=Physo156089.2;Parent=Physo156089;constitutive=1;rank=2 scaffold_10 . CDS 967962 968174 . - 0 ID=Physo156089;Parent=Physo156089;rank=1 scaffold_10 . exon 967962 968174 . - . ID=Physo156089.1;Parent=Physo156089;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 971634 974883 . - . ID=Physo156091;biotype=protein_coding;external_name=C_scaffold_10000110;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 971634 974883 . - . ID=Physo156091;Parent=Physo156091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 971634 971722 . - 0 ID=Physo156091;Parent=Physo156091;rank=9 scaffold_10 . exon 971634 971722 . - . ID=Physo156091.9;Parent=Physo156091;constitutive=1;ensembl_phase=1;rank=9 scaffold_10 . CDS 972022 972323 . - 0 ID=Physo156091;Parent=Physo156091;rank=8 scaffold_10 . exon 972022 972323 . - . ID=Physo156091.8;Parent=Physo156091;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_10 . CDS 972357 972701 . - 0 ID=Physo156091;Parent=Physo156091;rank=7 scaffold_10 . exon 972357 972701 . - . ID=Physo156091.7;Parent=Physo156091;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_10 . CDS 972772 973269 . - 0 ID=Physo156091;Parent=Physo156091;rank=6 scaffold_10 . exon 972772 973269 . - . ID=Physo156091.6;Parent=Physo156091;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_10 . CDS 973627 973759 . - 0 ID=Physo156091;Parent=Physo156091;rank=5 scaffold_10 . exon 973627 973759 . - . ID=Physo156091.5;Parent=Physo156091;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_10 . CDS 973889 974152 . - 0 ID=Physo156091;Parent=Physo156091;rank=4 scaffold_10 . exon 973889 974152 . - . ID=Physo156091.4;Parent=Physo156091;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 974417 974498 . - 0 ID=Physo156091;Parent=Physo156091;rank=3 scaffold_10 . exon 974417 974498 . - . ID=Physo156091.3;Parent=Physo156091;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 974587 974658 . - 0 ID=Physo156091;Parent=Physo156091;rank=2 scaffold_10 . exon 974587 974658 . - . ID=Physo156091.2;Parent=Physo156091;constitutive=1;rank=2 scaffold_10 . CDS 974732 974881 . - 0 ID=Physo156091;Parent=Physo156091;rank=1 scaffold_10 . exon 974732 974883 . - . ID=Physo156091.1;Parent=Physo156091;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . biological_region 982434 982438 0.999 - . logic_name=eponine scaffold_10 . repeat_region 982753 982774 . ? . description=dust scaffold_10 . repeat_region 982753 982774 . ? . description=trf scaffold_10 . biological_region 983377 983379 0.999 + . logic_name=eponine scaffold_10 . biological_region 983872 983877 0.999 - . logic_name=eponine scaffold_10 . biological_region 984413 984416 0.999 + . logic_name=eponine scaffold_10 . biological_region 984495 984500 0.999 - . logic_name=eponine scaffold_10 . biological_region 985313 985321 0.999 + . logic_name=eponine scaffold_10 . biological_region 985637 985641 0.999 + . logic_name=eponine scaffold_10 . repeat_region 986117 986140 . ? . description=trf scaffold_10 ensembl protein_coding_gene 977956 979072 . + . ID=Physo130318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100276;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 977956 979072 . + . ID=Physo130318;Parent=Physo130318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 977956 977958 . + 0 ID=Physo130318;Parent=Physo130318;rank=1 scaffold_10 . exon 977956 977958 . + . ID=Physo130318.1;Parent=Physo130318;constitutive=1;rank=1 scaffold_10 . CDS 978132 978132 . + 0 ID=Physo130318;Parent=Physo130318;rank=2 scaffold_10 . exon 978132 978132 . + . ID=Physo130318.2;Parent=Physo130318;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 978251 978378 . + 0 ID=Physo130318;Parent=Physo130318;rank=3 scaffold_10 . exon 978251 978378 . + . ID=Physo130318.3;Parent=Physo130318;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 978586 978891 . + 0 ID=Physo130318;Parent=Physo130318;rank=4 scaffold_10 . exon 978586 979072 . + . ID=Physo130318.4;Parent=Physo130318;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_10 ensembl protein_coding_gene 983059 984367 . - . ID=Physo130320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100278;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 983059 984367 . - . ID=Physo130320;Parent=Physo130320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 983059 983929 . - 0 ID=Physo130320;Parent=Physo130320;rank=2 scaffold_10 . exon 983059 983929 . - . ID=Physo130320.2;Parent=Physo130320;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 984010 984179 . - 0 ID=Physo130320;Parent=Physo130320;rank=1 scaffold_10 . exon 984010 984367 . - . ID=Physo130320.1;Parent=Physo130320;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_10 ensembl protein_coding_gene 987206 992038 . - . ID=Physo130322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100280;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 987206 992038 . - . ID=Physo130322;Parent=Physo130322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 987206 992038 . - 0 ID=Physo130322;Parent=Physo130322;rank=1 scaffold_10 . exon 987206 992038 . - . ID=Physo130322.1;Parent=Physo130322;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 979101 981649 . - . ID=Physo156093;biotype=protein_coding;external_name=C_scaffold_10000112;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 979101 981649 . - . ID=Physo156093;Parent=Physo156093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 979101 979448 . - 0 ID=Physo156093;Parent=Physo156093;rank=6 scaffold_10 . exon 979101 979448 . - . ID=Physo156093.6;Parent=Physo156093;constitutive=1;rank=6 scaffold_10 . CDS 979523 979712 . - 0 ID=Physo156093;Parent=Physo156093;rank=5 scaffold_10 . exon 979523 979712 . - . ID=Physo156093.5;Parent=Physo156093;constitutive=1;ensembl_phase=2;rank=5 scaffold_10 . CDS 979793 979855 . - 0 ID=Physo156093;Parent=Physo156093;rank=4 scaffold_10 . exon 979793 979855 . - . ID=Physo156093.4;Parent=Physo156093;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_10 . CDS 979929 980053 . - 0 ID=Physo156093;Parent=Physo156093;rank=3 scaffold_10 . exon 979929 980053 . - . ID=Physo156093.3;Parent=Physo156093;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_10 . CDS 980150 980487 . - 0 ID=Physo156093;Parent=Physo156093;rank=2 scaffold_10 . exon 980150 980487 . - . ID=Physo156093.2;Parent=Physo156093;constitutive=1;ensembl_phase=1;rank=2 scaffold_10 . CDS 981490 981649 . - 0 ID=Physo156093;Parent=Physo156093;rank=1 scaffold_10 . exon 981490 981649 . - . ID=Physo156093.1;Parent=Physo156093;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_10 ensembl protein_coding_gene 986029 987054 . + . ID=Physo156096;biotype=protein_coding;external_name=C_scaffold_10000115;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 986029 987054 . + . ID=Physo156096;Parent=Physo156096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 986029 986265 . + 0 ID=Physo156096;Parent=Physo156096;rank=1 scaffold_10 . exon 986029 986265 . + . ID=Physo156096.1;Parent=Physo156096;constitutive=1;rank=1 scaffold_10 . CDS 986287 986382 . + 0 ID=Physo156096;Parent=Physo156096;rank=2 scaffold_10 . exon 986287 986382 . + . ID=Physo156096.2;Parent=Physo156096;constitutive=1;rank=2 scaffold_10 . CDS 986505 986609 . + 0 ID=Physo156096;Parent=Physo156096;rank=3 scaffold_10 . exon 986505 986609 . + . ID=Physo156096.3;Parent=Physo156096;constitutive=1;rank=3 scaffold_10 . CDS 986682 986738 . + 0 ID=Physo156096;Parent=Physo156096;rank=4 scaffold_10 . exon 986682 986738 . + . ID=Physo156096.4;Parent=Physo156096;constitutive=1;rank=4 scaffold_10 . CDS 987052 987054 . + 0 ID=Physo156096;Parent=Physo156096;rank=5 scaffold_10 . exon 987052 987054 . + . ID=Physo156096.5;Parent=Physo156096;constitutive=1;rank=5 scaffold_10 ensembl protein_coding_gene 995943 999290 . + . ID=Physo108468;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100027;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 995943 999290 . + . ID=Physo108468;Parent=Physo108468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 995943 996040 . + 0 ID=Physo108468;Parent=Physo108468;rank=1 scaffold_10 . exon 995943 996040 . + . ID=Physo108468.1;Parent=Physo108468;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 . CDS 996574 996967 . + 0 ID=Physo108468;Parent=Physo108468;rank=2 scaffold_10 . exon 996574 996967 . + . ID=Physo108468.2;Parent=Physo108468;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 997053 997109 . + 0 ID=Physo108468;Parent=Physo108468;rank=3 scaffold_10 . exon 997053 997109 . + . ID=Physo108468.3;Parent=Physo108468;constitutive=1;rank=3 scaffold_10 . CDS 997194 999290 . + 0 ID=Physo108468;Parent=Physo108468;rank=4 scaffold_10 . exon 997194 999290 . + . ID=Physo108468.4;Parent=Physo108468;constitutive=1;rank=4 scaffold_10 ensembl protein_coding_gene 992989 994989 . + . ID=Physo130323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100281;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 992989 994989 . + . ID=Physo130323;Parent=Physo130323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 992989 994989 . + 0 ID=Physo130323;Parent=Physo130323;rank=1 scaffold_10 . exon 992989 994989 . + . ID=Physo130323.1;Parent=Physo130323;constitutive=1;rank=1 scaffold_10 . biological_region 997907 997911 0.999 - . logic_name=eponine scaffold_10 . biological_region 999864 999866 0.999 + . logic_name=eponine scaffold_10 . repeat_region 1001243 1001257 . ? . description=dust scaffold_10 . repeat_region 1002264 1002291 . ? . description=trf scaffold_10 . biological_region 1002331 1002334 0.999 - . logic_name=eponine scaffold_10 . repeat_region 1002850 1002859 . ? . description=dust scaffold_10 . biological_region 1003182 1003187 0.999 + . logic_name=eponine scaffold_10 . biological_region 1003192 1003197 0.999 - . logic_name=eponine scaffold_10 . biological_region 1004071 1004073 0.999 - . logic_name=eponine scaffold_10 . repeat_region 1005240 1005263 . ? . description=trf scaffold_10 . biological_region 1006981 1006983 0.999 + . logic_name=eponine scaffold_10 . biological_region 1007014 1007021 0.999 - . logic_name=eponine scaffold_10 . biological_region 1007052 1007055 0.999 - . logic_name=eponine scaffold_10 . biological_region 1007072 1007075 0.999 + . logic_name=eponine scaffold_10 ensembl protein_coding_gene 1002355 1002968 . + . ID=Physo112733;biotype=protein_coding;external_name=estExt_Genewise1.C_100179;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 1002355 1002968 . + . ID=Physo112733;Parent=Physo112733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 1002355 1002462 . + . ID=Physo112733.1;Parent=Physo112733;constitutive=1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 1002397 1002462 . + 0 ID=Physo112733;Parent=Physo112733;rank=1 scaffold_10 . CDS 1002547 1002747 . + 0 ID=Physo112733;Parent=Physo112733;rank=2 scaffold_10 . exon 1002547 1002968 . + . ID=Physo112733.2;Parent=Physo112733;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_10 ensembl protein_coding_gene 999725 1001567 . - . ID=Physo130325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100283;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 999725 1001567 . - . ID=Physo130325;Parent=Physo130325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 999725 1000891 . - 0 ID=Physo130325;Parent=Physo130325;rank=2 scaffold_10 . exon 999725 1000891 . - . ID=Physo130325.2;Parent=Physo130325;constitutive=1;rank=2 scaffold_10 . CDS 1001286 1001567 . - 0 ID=Physo130325;Parent=Physo130325;rank=1 scaffold_10 . exon 1001286 1001567 . - . ID=Physo130325.1;Parent=Physo130325;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 1006650 1008228 . + . ID=Physo130327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100285;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 1006650 1008228 . + . ID=Physo130327;Parent=Physo130327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 1006650 1006706 . + 0 ID=Physo130327;Parent=Physo130327;rank=1 scaffold_10 . exon 1006650 1006706 . + . ID=Physo130327.1;Parent=Physo130327;constitutive=1;rank=1 scaffold_10 . CDS 1006852 1007167 . + 0 ID=Physo130327;Parent=Physo130327;rank=2 scaffold_10 . exon 1006852 1007167 . + . ID=Physo130327.2;Parent=Physo130327;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 1007246 1008138 . + 0 ID=Physo130327;Parent=Physo130327;rank=3 scaffold_10 . exon 1007246 1008228 . + . ID=Physo130327.3;Parent=Physo130327;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_10 ensembl protein_coding_gene 1003318 1004909 . - . ID=Physo156104;biotype=protein_coding;external_name=C_scaffold_10000123;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 1003318 1004909 . - . ID=Physo156104;Parent=Physo156104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 1003318 1003637 . - 0 ID=Physo156104;Parent=Physo156104;rank=4 scaffold_10 . exon 1003318 1003637 . - . ID=Physo156104.4;Parent=Physo156104;constitutive=1;ensembl_phase=1;rank=4 scaffold_10 . CDS 1003842 1004511 . - 0 ID=Physo156104;Parent=Physo156104;rank=3 scaffold_10 . exon 1003842 1004511 . - . ID=Physo156104.3;Parent=Physo156104;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_10 . CDS 1004629 1004703 . - 0 ID=Physo156104;Parent=Physo156104;rank=2 scaffold_10 . exon 1004629 1004703 . - . ID=Physo156104.2;Parent=Physo156104;constitutive=1;rank=2 scaffold_10 . CDS 1004778 1004909 . - 0 ID=Physo156104;Parent=Physo156104;rank=1 scaffold_10 . exon 1004778 1004909 . - . ID=Physo156104.1;Parent=Physo156104;constitutive=1;rank=1 scaffold_10 ensembl protein_coding_gene 1012649 1013726 . + . ID=Physo108469;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_100028;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 1012649 1013726 . + . ID=Physo108469;Parent=Physo108469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 1012649 1013726 . + . ID=Physo108469.1;Parent=Physo108469;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_10 . CDS 1012691 1013707 . + 0 ID=Physo108469;Parent=Physo108469;rank=1 scaffold_10 ensembl protein_coding_gene 1008679 1011626 . - . ID=Physo130328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100286;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 1008679 1011626 . - . ID=Physo130328;Parent=Physo130328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 1008679 1008688 . - 0 ID=Physo130328;Parent=Physo130328;rank=2 scaffold_10 . exon 1008679 1008688 . - . ID=Physo130328.2;Parent=Physo130328;constitutive=1;ensembl_phase=2;rank=2 scaffold_10 . CDS 1008727 1011626 . - 0 ID=Physo130328;Parent=Physo130328;rank=1 scaffold_10 . exon 1008727 1011626 . - . ID=Physo130328.1;Parent=Physo130328;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_10 ensembl protein_coding_gene 1013991 1015812 . + . ID=Physo130330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100288;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 1013991 1015812 . + . ID=Physo130330;Parent=Physo130330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . CDS 1013991 1014410 . + 0 ID=Physo130330;Parent=Physo130330;rank=1 scaffold_10 . exon 1013991 1014410 . + . ID=Physo130330.1;Parent=Physo130330;constitutive=1;rank=1 scaffold_10 . CDS 1014478 1014640 . + 0 ID=Physo130330;Parent=Physo130330;rank=2 scaffold_10 . exon 1014478 1014640 . + . ID=Physo130330.2;Parent=Physo130330;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_10 . CDS 1014723 1015234 . + 0 ID=Physo130330;Parent=Physo130330;rank=3 scaffold_10 . exon 1014723 1015234 . + . ID=Physo130330.3;Parent=Physo130330;constitutive=1;ensembl_phase=1;rank=3 scaffold_10 . CDS 1015268 1015415 . + 0 ID=Physo130330;Parent=Physo130330;rank=4 scaffold_10 . exon 1015268 1015415 . + . ID=Physo130330.4;Parent=Physo130330;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_10 . CDS 1015584 1015678 . + 0 ID=Physo130330;Parent=Physo130330;rank=5 scaffold_10 . exon 1015584 1015678 . + . ID=Physo130330.5;Parent=Physo130330;constitutive=1;ensembl_phase=1;rank=5 scaffold_10 . CDS 1015792 1015812 . + 0 ID=Physo130330;Parent=Physo130330;rank=6 scaffold_10 . exon 1015792 1015812 . + . ID=Physo130330.6;Parent=Physo130330;constitutive=1;rank=6 scaffold_10 . biological_region 1018808 1018809 0.999 + . logic_name=eponine scaffold_10 . biological_region 1018981 1018982 0.999 - . logic_name=eponine scaffold_10 . repeat_region 1021382 1021433 . ? . description=trf scaffold_10 . repeat_region 1021978 1022102 . - . description=LSU-rRNA_Hca scaffold_10 . repeat_region 1022494 1022748 . - . description=LSU-rRNA_Hca scaffold_10 . repeat_region 1024023 1024056 . ? . description=trf scaffold_10 . repeat_region 1024246 1024254 . ? . description=dust scaffold_10 . biological_region 1025028 1025033 0.999 + . logic_name=eponine scaffold_10 . repeat_region 1026668 1026675 . ? . description=dust scaffold_10 ensembl protein_coding_gene 1018582 1020279 . - . ID=Physo130331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_100289;logic_name=jgi_physo1_1 scaffold_10 ensembl transcript 1018582 1020279 . - . ID=Physo130331;Parent=Physo130331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_10 . exon 1018582 1019670 . - . ID=Physo130331.5;Parent=Physo130331;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_10 . CDS 1018683 1019670 . - 0 ID=Physo130331;Parent=Physo130331;rank=5 scaffold_10 . CDS 1019739 1019847 . - 0 ID=Physo130331;Parent=Physo130331;rank=4 scaffold_10 . exon 1019739 1019847 . - . ID=Physo130331.4;Parent=Physo130331;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_10 . CDS 1019919 1019938 . - 0 ID=Physo130331;Parent=Physo130331;rank=3 scaffold_10 . exon 1019919 1019938 . - . ID=Physo130331.3;Parent=Physo130331;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_10 . CDS 1020018 1020110 . - 0 ID=Physo130331;Parent=Physo130331;rank=2 scaffold_10 . exon 1020018 1020110 . - . ID=Physo130331.2;Parent=Physo130331;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_10 . CDS 1020188 1020279 . - 0 ID=Physo130331;Parent=Physo130331;rank=1 scaffold_10 . exon 1020188 1020279 . - . ID=Physo130331.1;Parent=Physo130331;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_9 1 1100581 scaffold_9 . repeat_region 10 140 . ? . description=dust scaffold_9 . repeat_region 26 140 . ? . description=trf scaffold_9 . repeat_region 417 573 . ? . description=dust scaffold_9 . repeat_region 469 491 . ? . description=trf scaffold_9 . repeat_region 471 568 . ? . description=trf scaffold_9 . repeat_region 497 557 . ? . description=trf scaffold_9 . repeat_region 519 573 . ? . description=trf scaffold_9 . repeat_region 1901 1908 . ? . description=dust scaffold_9 . biological_region 4649 4649 0.999 - . logic_name=eponine scaffold_9 . repeat_region 6028 6035 . ? . description=dust scaffold_9 . biological_region 6469 6471 0.999 - . logic_name=eponine scaffold_9 . biological_region 6604 6605 0.999 - . logic_name=eponine scaffold_9 . repeat_region 7171 7392 . + . description=GypsyPi-1c_I-int scaffold_9 . biological_region 7915 7917 0.999 - . logic_name=eponine scaffold_9 . biological_region 8185 8188 0.999 - . logic_name=eponine scaffold_9 . biological_region 9413 9414 0.999 + . logic_name=eponine scaffold_9 . biological_region 9708 9716 0.999 + . logic_name=eponine scaffold_9 . biological_region 9888 9893 0.999 + . logic_name=eponine scaffold_9 ensembl tRNA_gene 1373 1453 . + . ID=EPrPSOG00000000143;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_9 ensembl transcript 1373 1453 . + . ID=EPrPSOT00000000143;Parent=EPrPSOG00000000143;biotype=tRNA;logic_name=ncrna_eg scaffold_9 ensembl tRNA_gene 581 652 . + . ID=EPrPSOG00000000212;biotype=tRNA;description=tRNA-Thr for anticodon UGU [Source:TRNASCAN_SE%3BAcc:tRNA-Thr];external_name=tRNA-Thr;logic_name=ncrna_eg scaffold_9 ensembl transcript 581 652 . + . ID=EPrPSOT00000000212;Parent=EPrPSOG00000000212;biotype=tRNA;logic_name=ncrna_eg scaffold_9 . exon 1373 1453 . + . ID=EPrPSOE00000000143;Parent=EPrPSOT00000000143;constitutive=1;rank=1 scaffold_9 . exon 581 652 . + . ID=EPrPSOE00000000212;Parent=EPrPSOT00000000212;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 3666 7946 . + . ID=Physo129724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90001;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 3666 7946 . + . ID=Physo129724;Parent=Physo129724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 3666 4470 . + 0 ID=Physo129724;Parent=Physo129724;rank=1 scaffold_9 . exon 3666 4470 . + . ID=Physo129724.1;Parent=Physo129724;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 4517 4652 . + 0 ID=Physo129724;Parent=Physo129724;rank=2 scaffold_9 . exon 4517 4652 . + . ID=Physo129724.2;Parent=Physo129724;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 4691 5671 . + 0 ID=Physo129724;Parent=Physo129724;rank=3 scaffold_9 . exon 4691 5671 . + . ID=Physo129724.3;Parent=Physo129724;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . CDS 5873 5987 . + 0 ID=Physo129724;Parent=Physo129724;rank=4 scaffold_9 . exon 5873 5987 . + . ID=Physo129724.4;Parent=Physo129724;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 6103 6172 . + 0 ID=Physo129724;Parent=Physo129724;rank=5 scaffold_9 . exon 6103 6172 . + . ID=Physo129724.5;Parent=Physo129724;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_9 . CDS 6268 6422 . + 0 ID=Physo129724;Parent=Physo129724;rank=6 scaffold_9 . exon 6268 6422 . + . ID=Physo129724.6;Parent=Physo129724;constitutive=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 6488 6639 . + 0 ID=Physo129724;Parent=Physo129724;rank=7 scaffold_9 . exon 6488 6639 . + . ID=Physo129724.7;Parent=Physo129724;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_9 . CDS 7373 7946 . + 0 ID=Physo129724;Parent=Physo129724;rank=8 scaffold_9 . exon 7373 7946 . + . ID=Physo129724.8;Parent=Physo129724;constitutive=1;ensembl_phase=2;rank=8 scaffold_9 ensembl protein_coding_gene 8389 9624 . - . ID=Physo129725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90002;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 8389 9624 . - . ID=Physo129725;Parent=Physo129725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 8389 9624 . - 0 ID=Physo129725;Parent=Physo129725;rank=1 scaffold_9 . exon 8389 9624 . - . ID=Physo129725.1;Parent=Physo129725;constitutive=1;rank=1 scaffold_9 . repeat_region 13029 13088 . + . description=(TTCA)n scaffold_9 ensembl protein_coding_gene 17706 19402 . - . ID=Physo108405;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90001;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 17706 19402 . - . ID=Physo108405;Parent=Physo108405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 17706 18592 . - 0 ID=Physo108405;Parent=Physo108405;rank=3 scaffold_9 . exon 17706 18592 . - . ID=Physo108405.3;Parent=Physo108405;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 18677 18789 . - 0 ID=Physo108405;Parent=Physo108405;rank=2 scaffold_9 . exon 18677 18789 . - . ID=Physo108405.2;Parent=Physo108405;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 18879 19402 . - 0 ID=Physo108405;Parent=Physo108405;rank=1 scaffold_9 . exon 18879 19402 . - . ID=Physo108405.1;Parent=Physo108405;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 15570 17372 . + . ID=Physo129726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90003;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 15570 17372 . + . ID=Physo129726;Parent=Physo129726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 15570 17372 . + 0 ID=Physo129726;Parent=Physo129726;rank=1 scaffold_9 . exon 15570 17372 . + . ID=Physo129726.1;Parent=Physo129726;constitutive=1;rank=1 scaffold_9 . repeat_region 20418 20451 . ? . description=dust scaffold_9 . biological_region 20693 20695 0.999 - . logic_name=eponine scaffold_9 . repeat_region 21406 21426 . ? . description=trf scaffold_9 . biological_region 24566 24570 0.999 + . logic_name=eponine scaffold_9 . biological_region 25078 25082 0.999 + . logic_name=eponine scaffold_9 . biological_region 25569 25571 0.999 - . logic_name=eponine scaffold_9 . biological_region 25597 25601 0.999 + . logic_name=eponine scaffold_9 . biological_region 25624 25637 0.999 - . logic_name=eponine scaffold_9 . biological_region 25833 25839 0.999 - . logic_name=eponine scaffold_9 . biological_region 25889 25890 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 24356 25263 . - . ID=Physo108406;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90002;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 24356 25263 . - . ID=Physo108406;Parent=Physo108406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 24356 24712 . - . ID=Physo108406.3;Parent=Physo108406;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_9 . CDS 24413 24712 . - 0 ID=Physo108406;Parent=Physo108406;rank=3 scaffold_9 . CDS 24802 24993 . - 0 ID=Physo108406;Parent=Physo108406;rank=2 scaffold_9 . exon 24802 24993 . - . ID=Physo108406.2;Parent=Physo108406;constitutive=1;rank=2 scaffold_9 . CDS 25078 25263 . - 0 ID=Physo108406;Parent=Physo108406;rank=1 scaffold_9 . exon 25078 25263 . - . ID=Physo108406.1;Parent=Physo108406;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 25488 29012 . + . ID=Physo129730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90007;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 25488 29012 . + . ID=Physo129730;Parent=Physo129730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 25488 26148 . + 0 ID=Physo129730;Parent=Physo129730;rank=1 scaffold_9 . exon 25488 26148 . + . ID=Physo129730.1;Parent=Physo129730;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 26236 26391 . + 0 ID=Physo129730;Parent=Physo129730;rank=2 scaffold_9 . exon 26236 26391 . + . ID=Physo129730.2;Parent=Physo129730;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 26557 27354 . + 0 ID=Physo129730;Parent=Physo129730;rank=3 scaffold_9 . exon 26557 27354 . + . ID=Physo129730.3;Parent=Physo129730;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 27655 27834 . + 0 ID=Physo129730;Parent=Physo129730;rank=4 scaffold_9 . exon 27655 27834 . + . ID=Physo129730.4;Parent=Physo129730;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 27917 28060 . + 0 ID=Physo129730;Parent=Physo129730;rank=5 scaffold_9 . exon 27917 28060 . + . ID=Physo129730.5;Parent=Physo129730;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 28137 28412 . + 0 ID=Physo129730;Parent=Physo129730;rank=6 scaffold_9 . exon 28137 28412 . + . ID=Physo129730.6;Parent=Physo129730;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 28966 29012 . + 0 ID=Physo129730;Parent=Physo129730;rank=7 scaffold_9 . exon 28966 29012 . + . ID=Physo129730.7;Parent=Physo129730;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 ensembl protein_coding_gene 20626 23210 . + . ID=Physo155822;biotype=protein_coding;external_name=C_scaffold_9000002;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 20626 23210 . + . ID=Physo155822;Parent=Physo155822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 20626 20858 . + 0 ID=Physo155822;Parent=Physo155822;rank=1 scaffold_9 . exon 20626 20858 . + . ID=Physo155822.1;Parent=Physo155822;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 20941 21144 . + 0 ID=Physo155822;Parent=Physo155822;rank=2 scaffold_9 . exon 20941 21144 . + . ID=Physo155822.2;Parent=Physo155822;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 21214 21454 . + 0 ID=Physo155822;Parent=Physo155822;rank=3 scaffold_9 . exon 21214 21454 . + . ID=Physo155822.3;Parent=Physo155822;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 21709 21788 . + 0 ID=Physo155822;Parent=Physo155822;rank=4 scaffold_9 . exon 21709 21788 . + . ID=Physo155822.4;Parent=Physo155822;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 21854 21923 . + 0 ID=Physo155822;Parent=Physo155822;rank=5 scaffold_9 . exon 21854 21923 . + . ID=Physo155822.5;Parent=Physo155822;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 22001 22092 . + 0 ID=Physo155822;Parent=Physo155822;rank=6 scaffold_9 . exon 22001 22092 . + . ID=Physo155822.6;Parent=Physo155822;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . CDS 22312 22414 . + 0 ID=Physo155822;Parent=Physo155822;rank=7 scaffold_9 . exon 22312 22414 . + . ID=Physo155822.7;Parent=Physo155822;constitutive=1;ensembl_phase=2;rank=7 scaffold_9 . CDS 22493 22636 . + 0 ID=Physo155822;Parent=Physo155822;rank=8 scaffold_9 . exon 22493 22636 . + . ID=Physo155822.8;Parent=Physo155822;constitutive=1;rank=8 scaffold_9 . CDS 22707 22792 . + 0 ID=Physo155822;Parent=Physo155822;rank=9 scaffold_9 . exon 22707 22792 . + . ID=Physo155822.9;Parent=Physo155822;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_9 . CDS 22850 23210 . + 0 ID=Physo155822;Parent=Physo155822;rank=10 scaffold_9 . exon 22850 23210 . + . ID=Physo155822.10;Parent=Physo155822;constitutive=1;ensembl_phase=2;rank=10 scaffold_9 ensembl protein_coding_gene 36338 37164 . + . ID=Physo129732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90009;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 36338 37164 . + . ID=Physo129732;Parent=Physo129732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 36338 36729 . + . ID=Physo129732.1;Parent=Physo129732;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 36342 36729 . + 0 ID=Physo129732;Parent=Physo129732;rank=1 scaffold_9 . CDS 36811 36903 . + 0 ID=Physo129732;Parent=Physo129732;rank=2 scaffold_9 . exon 36811 36903 . + . ID=Physo129732.2;Parent=Physo129732;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 36983 37083 . + 0 ID=Physo129732;Parent=Physo129732;rank=3 scaffold_9 . exon 36983 37164 . + . ID=Physo129732.3;Parent=Physo129732;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_9 ensembl protein_coding_gene 34644 36192 . - . ID=Physo155824;biotype=protein_coding;external_name=C_scaffold_9000004;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 34644 36192 . - . ID=Physo155824;Parent=Physo155824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 34644 34691 . - 0 ID=Physo155824;Parent=Physo155824;rank=3 scaffold_9 . exon 34644 34691 . - . ID=Physo155824.3;Parent=Physo155824;constitutive=1;rank=3 scaffold_9 . CDS 34975 35648 . - 0 ID=Physo155824;Parent=Physo155824;rank=2 scaffold_9 . exon 34975 35648 . - . ID=Physo155824.2;Parent=Physo155824;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 35712 36192 . - 0 ID=Physo155824;Parent=Physo155824;rank=1 scaffold_9 . exon 35712 36192 . - . ID=Physo155824.1;Parent=Physo155824;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 37399 37638 . - . ID=Physo155826;biotype=protein_coding;external_name=C_scaffold_9000006;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 37399 37638 . - . ID=Physo155826;Parent=Physo155826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 37399 37440 . - 0 ID=Physo155826;Parent=Physo155826;rank=2 scaffold_9 . exon 37399 37440 . - . ID=Physo155826.2;Parent=Physo155826;constitutive=1;rank=2 scaffold_9 . CDS 37477 37638 . - 0 ID=Physo155826;Parent=Physo155826;rank=1 scaffold_9 . exon 37477 37638 . - . ID=Physo155826.1;Parent=Physo155826;constitutive=1;rank=1 scaffold_9 . biological_region 43213 43216 0.999 - . logic_name=eponine scaffold_9 . biological_region 44326 44327 0.999 + . logic_name=eponine scaffold_9 . biological_region 44444 44451 0.999 + . logic_name=eponine scaffold_9 . biological_region 44655 44661 0.999 + . logic_name=eponine scaffold_9 . repeat_region 45123 45194 . ? . description=trf scaffold_9 . repeat_region 45139 45194 . ? . description=dust scaffold_9 . repeat_region 46027 46066 . ? . description=trf scaffold_9 . biological_region 47611 47611 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 46685 47909 . - . ID=Physo108407;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90003;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 46685 47909 . - . ID=Physo108407;Parent=Physo108407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 46685 46955 . - . ID=Physo108407.4;Parent=Physo108407;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_9 . CDS 46788 46955 . - 0 ID=Physo108407;Parent=Physo108407;rank=4 scaffold_9 . CDS 47035 47114 . - 0 ID=Physo108407;Parent=Physo108407;rank=3 scaffold_9 . exon 47035 47114 . - . ID=Physo108407.3;Parent=Physo108407;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 47195 47690 . - 0 ID=Physo108407;Parent=Physo108407;rank=2 scaffold_9 . exon 47195 47690 . - . ID=Physo108407.2;Parent=Physo108407;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 47768 47902 . - 0 ID=Physo108407;Parent=Physo108407;rank=1 scaffold_9 . exon 47768 47909 . - . ID=Physo108407.1;Parent=Physo108407;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 40747 42207 . + . ID=Physo129733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90010;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 40747 42207 . + . ID=Physo129733;Parent=Physo129733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 40747 42207 . + 0 ID=Physo129733;Parent=Physo129733;rank=1 scaffold_9 . exon 40747 42207 . + . ID=Physo129733.1;Parent=Physo129733;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 44352 46555 . + . ID=Physo129734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90011;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 44352 46555 . + . ID=Physo129734;Parent=Physo129734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 44352 46463 . + 0 ID=Physo129734;Parent=Physo129734;rank=1 scaffold_9 . exon 44352 46555 . + . ID=Physo129734.1;Parent=Physo129734;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 48521 51798 . + . ID=Physo155828;biotype=protein_coding;external_name=C_scaffold_9000008;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 48521 51798 . + . ID=Physo155828;Parent=Physo155828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 48521 48922 . + 0 ID=Physo155828;Parent=Physo155828;rank=1 scaffold_9 . exon 48521 48922 . + . ID=Physo155828.1;Parent=Physo155828;constitutive=1;rank=1 scaffold_9 . CDS 49018 49175 . + 0 ID=Physo155828;Parent=Physo155828;rank=2 scaffold_9 . exon 49018 49175 . + . ID=Physo155828.2;Parent=Physo155828;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 49250 49617 . + 0 ID=Physo155828;Parent=Physo155828;rank=3 scaffold_9 . exon 49250 49617 . + . ID=Physo155828.3;Parent=Physo155828;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 50218 50522 . + 0 ID=Physo155828;Parent=Physo155828;rank=4 scaffold_9 . CDS 50580 50689 . + 0 ID=Physo155828;Parent=Physo155828;rank=5 scaffold_9 . CDS 50984 51086 . + 0 ID=Physo155828;Parent=Physo155828;rank=6 scaffold_9 . CDS 51141 51323 . + 0 ID=Physo155828;Parent=Physo155828;rank=7 scaffold_9 . CDS 51381 51515 . + 0 ID=Physo155828;Parent=Physo155828;rank=8 scaffold_9 . CDS 51595 51666 . + 0 ID=Physo155828;Parent=Physo155828;rank=9 scaffold_9 . CDS 51781 51798 . + 0 ID=Physo155828;Parent=Physo155828;rank=10 scaffold_9 ensembl protein_coding_gene 52912 54877 . - . ID=Physo129737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90014;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 52912 54877 . - . ID=Physo129737;Parent=Physo129737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 52912 53504 . - 0 ID=Physo129737;Parent=Physo129737;rank=3 scaffold_9 . exon 52912 53504 . - . ID=Physo129737.3;Parent=Physo129737;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 53581 54607 . - 0 ID=Physo129737;Parent=Physo129737;rank=2 scaffold_9 . exon 53581 54607 . - . ID=Physo129737.2;Parent=Physo129737;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 54686 54877 . - 0 ID=Physo129737;Parent=Physo129737;rank=1 scaffold_9 . exon 54686 54877 . - . ID=Physo129737.1;Parent=Physo129737;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 55070 63349 . + . ID=Physo129738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90015;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 55070 63349 . + . ID=Physo129738;Parent=Physo129738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 55070 63349 . + 0 ID=Physo129738;Parent=Physo129738;rank=1 scaffold_9 . exon 55070 63349 . + . ID=Physo129738.1;Parent=Physo129738;constitutive=1;rank=1 scaffold_9 . exon 50218 50522 . + . ID=Physo155828.4;Parent=Physo155828;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . exon 50580 50689 . + . ID=Physo155828.5;Parent=Physo155828;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . exon 50984 51086 . + . ID=Physo155828.6;Parent=Physo155828;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . exon 51141 51323 . + . ID=Physo155828.7;Parent=Physo155828;constitutive=1;rank=7 scaffold_9 . exon 51381 51515 . + . ID=Physo155828.8;Parent=Physo155828;constitutive=1;rank=8 scaffold_9 . exon 51595 51666 . + . ID=Physo155828.9;Parent=Physo155828;constitutive=1;rank=9 scaffold_9 . exon 51781 51798 . + . ID=Physo155828.10;Parent=Physo155828;constitutive=1;rank=10 scaffold_9 . biological_region 61568 61569 0.999 + . logic_name=eponine scaffold_9 . biological_region 69243 69247 0.999 + . logic_name=eponine scaffold_9 . biological_region 69335 69347 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 64889 69510 . - . ID=Physo129740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90017;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 64889 69510 . - . ID=Physo129740;Parent=Physo129740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 64889 65143 . - 0 ID=Physo129740;Parent=Physo129740;rank=15 scaffold_9 . exon 64889 65143 . - . ID=Physo129740.15;Parent=Physo129740;constitutive=1;rank=15 scaffold_9 . CDS 65226 65462 . - 0 ID=Physo129740;Parent=Physo129740;rank=14 scaffold_9 . exon 65226 65462 . - . ID=Physo129740.14;Parent=Physo129740;constitutive=1;rank=14 scaffold_9 . CDS 65524 65955 . - 0 ID=Physo129740;Parent=Physo129740;rank=13 scaffold_9 . exon 65524 65955 . - . ID=Physo129740.13;Parent=Physo129740;constitutive=1;rank=13 scaffold_9 . CDS 66031 66243 . - 0 ID=Physo129740;Parent=Physo129740;rank=12 scaffold_9 . exon 66031 66243 . - . ID=Physo129740.12;Parent=Physo129740;constitutive=1;rank=12 scaffold_9 . CDS 66328 66635 . - 0 ID=Physo129740;Parent=Physo129740;rank=11 scaffold_9 . exon 66328 66635 . - . ID=Physo129740.11;Parent=Physo129740;constitutive=1;ensembl_phase=1;rank=11 scaffold_9 . CDS 66709 66773 . - 0 ID=Physo129740;Parent=Physo129740;rank=10 scaffold_9 . exon 66709 66773 . - . ID=Physo129740.10;Parent=Physo129740;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_9 . CDS 66919 67012 . - 0 ID=Physo129740;Parent=Physo129740;rank=9 scaffold_9 . exon 66919 67012 . - . ID=Physo129740.9;Parent=Physo129740;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_9 . CDS 67314 67408 . - 0 ID=Physo129740;Parent=Physo129740;rank=8 scaffold_9 . exon 67314 67408 . - . ID=Physo129740.8;Parent=Physo129740;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_9 . CDS 67480 67530 . - 0 ID=Physo129740;Parent=Physo129740;rank=7 scaffold_9 . exon 67480 67530 . - . ID=Physo129740.7;Parent=Physo129740;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_9 . CDS 67603 67712 . - 0 ID=Physo129740;Parent=Physo129740;rank=6 scaffold_9 . exon 67603 67712 . - . ID=Physo129740.6;Parent=Physo129740;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . CDS 68126 68520 . - 0 ID=Physo129740;Parent=Physo129740;rank=5 scaffold_9 . exon 68126 68520 . - . ID=Physo129740.5;Parent=Physo129740;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 68593 68774 . - 0 ID=Physo129740;Parent=Physo129740;rank=4 scaffold_9 . exon 68593 68774 . - . ID=Physo129740.4;Parent=Physo129740;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 68857 69016 . - 0 ID=Physo129740;Parent=Physo129740;rank=3 scaffold_9 . exon 68857 69016 . - . ID=Physo129740.3;Parent=Physo129740;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 69106 69283 . - 0 ID=Physo129740;Parent=Physo129740;rank=2 scaffold_9 . exon 69106 69283 . - . ID=Physo129740.2;Parent=Physo129740;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 69349 69510 . - 0 ID=Physo129740;Parent=Physo129740;rank=1 scaffold_9 . exon 69349 69510 . - . ID=Physo129740.1;Parent=Physo129740;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 63552 64584 . - . ID=Physo155830;biotype=protein_coding;external_name=C_scaffold_9000010;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 63552 64584 . - . ID=Physo155830;Parent=Physo155830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 63552 63722 . - 0 ID=Physo155830;Parent=Physo155830;rank=4 scaffold_9 . exon 63552 63722 . - . ID=Physo155830.4;Parent=Physo155830;constitutive=1;rank=4 scaffold_9 . CDS 63805 63944 . - 0 ID=Physo155830;Parent=Physo155830;rank=3 scaffold_9 . exon 63805 63944 . - . ID=Physo155830.3;Parent=Physo155830;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 64033 64262 . - 0 ID=Physo155830;Parent=Physo155830;rank=2 scaffold_9 . exon 64033 64262 . - . ID=Physo155830.2;Parent=Physo155830;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 64352 64584 . - 0 ID=Physo155830;Parent=Physo155830;rank=1 scaffold_9 . exon 64352 64584 . - . ID=Physo155830.1;Parent=Physo155830;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . repeat_region 70220 70262 . ? . description=dust scaffold_9 . repeat_region 70221 70255 . ? . description=trf scaffold_9 . repeat_region 71646 71669 . ? . description=dust scaffold_9 . repeat_region 71844 71873 . ? . description=trf scaffold_9 . repeat_region 72829 72884 . ? . description=trf scaffold_9 . repeat_region 73089 73247 . ? . description=trf scaffold_9 . repeat_region 74193 74214 . ? . description=trf scaffold_9 . repeat_region 77659 77708 . ? . description=dust scaffold_9 . repeat_region 78781 78789 . ? . description=dust scaffold_9 ensembl protein_coding_gene 69977 71728 . - . ID=Physo129741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90018;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 69977 71728 . - . ID=Physo129741;Parent=Physo129741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 69977 71728 . - 0 ID=Physo129741;Parent=Physo129741;rank=1 scaffold_9 . exon 69977 71728 . - . ID=Physo129741.1;Parent=Physo129741;constitutive=1;rank=1 scaffold_9 . biological_region 79685 79690 0.999 + . logic_name=eponine scaffold_9 . biological_region 79711 79714 0.999 - . logic_name=eponine scaffold_9 . biological_region 79733 79736 0.999 - . logic_name=eponine scaffold_9 . biological_region 79759 79762 0.999 - . logic_name=eponine scaffold_9 . biological_region 79795 79798 0.999 - . logic_name=eponine scaffold_9 . biological_region 84047 84051 0.999 + . logic_name=eponine scaffold_9 . biological_region 84117 84121 0.999 - . logic_name=eponine scaffold_9 . biological_region 84133 84139 0.999 + . logic_name=eponine scaffold_9 . biological_region 86841 86841 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 83978 85408 . + . ID=Physo108408;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90004;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 83978 85408 . + . ID=Physo108408;Parent=Physo108408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 83978 85116 . + . ID=Physo108408.1;Parent=Physo108408;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 83995 85116 . + 0 ID=Physo108408;Parent=Physo108408;rank=1 scaffold_9 . CDS 85217 85261 . + 0 ID=Physo108408;Parent=Physo108408;rank=2 scaffold_9 . exon 85217 85408 . + . ID=Physo108408.2;Parent=Physo108408;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_9 ensembl protein_coding_gene 86470 87735 . + . ID=Physo108409;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90005;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 86470 87735 . + . ID=Physo108409;Parent=Physo108409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 86470 87735 . + 0 ID=Physo108409;Parent=Physo108409;rank=1 scaffold_9 . exon 86470 87735 . + . ID=Physo108409.1;Parent=Physo108409;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 79497 80562 . + . ID=Physo129742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90019;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 79497 80562 . + . ID=Physo129742;Parent=Physo129742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 79497 79526 . + 0 ID=Physo129742;Parent=Physo129742;rank=1 scaffold_9 . exon 79497 79526 . + . ID=Physo129742.1;Parent=Physo129742;constitutive=1;rank=1 scaffold_9 . CDS 79723 80562 . + 0 ID=Physo129742;Parent=Physo129742;rank=2 scaffold_9 . exon 79723 80562 . + . ID=Physo129742.2;Parent=Physo129742;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 82182 83631 . - . ID=Physo129743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90020;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 82182 83631 . - . ID=Physo129743;Parent=Physo129743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 82182 82781 . - 0 ID=Physo129743;Parent=Physo129743;rank=2 scaffold_9 . exon 82182 82781 . - . ID=Physo129743.2;Parent=Physo129743;constitutive=1;rank=2 scaffold_9 . CDS 82918 83040 . - 0 ID=Physo129743;Parent=Physo129743;rank=1 scaffold_9 . exon 82918 83631 . - . ID=Physo129743.1;Parent=Physo129743;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 88200 89031 . + . ID=Physo129746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90023;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 88200 89031 . + . ID=Physo129746;Parent=Physo129746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 88200 89031 . + . ID=Physo129746.1;Parent=Physo129746;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 88204 89031 . + 0 ID=Physo129746;Parent=Physo129746;rank=1 scaffold_9 ensembl protein_coding_gene 89160 90605 . - . ID=Physo155833;biotype=protein_coding;external_name=C_scaffold_9000013;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 89160 90605 . - . ID=Physo155833;Parent=Physo155833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 89160 89400 . - 0 ID=Physo155833;Parent=Physo155833;rank=8 scaffold_9 . exon 89160 89400 . - . ID=Physo155833.8;Parent=Physo155833;constitutive=1;ensembl_phase=2;rank=8 scaffold_9 . CDS 89467 89575 . - 0 ID=Physo155833;Parent=Physo155833;rank=7 scaffold_9 . CDS 89642 89709 . - 0 ID=Physo155833;Parent=Physo155833;rank=6 scaffold_9 . CDS 89781 89844 . - 0 ID=Physo155833;Parent=Physo155833;rank=5 scaffold_9 . CDS 89942 90032 . - 0 ID=Physo155833;Parent=Physo155833;rank=4 scaffold_9 . CDS 90108 90213 . - 0 ID=Physo155833;Parent=Physo155833;rank=3 scaffold_9 . CDS 90291 90438 . - 0 ID=Physo155833;Parent=Physo155833;rank=2 scaffold_9 . CDS 90521 90605 . - 0 ID=Physo155833;Parent=Physo155833;rank=1 scaffold_9 . repeat_region 90871 90927 . ? . description=dust scaffold_9 . repeat_region 90872 90902 . ? . description=trf scaffold_9 ensembl protein_coding_gene 90664 92715 . - . ID=Physo108410;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90006;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 90664 92715 . - . ID=Physo108410;Parent=Physo108410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 90664 92715 . - . ID=Physo108410.1;Parent=Physo108410;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 . CDS 90940 92715 . - 0 ID=Physo108410;Parent=Physo108410;rank=1 scaffold_9 ensembl protein_coding_gene 96736 98052 . - . ID=Physo129751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90028;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 96736 98052 . - . ID=Physo129751;Parent=Physo129751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 96736 98052 . - . ID=Physo129751.1;Parent=Physo129751;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 96915 97982 . - 0 ID=Physo129751;Parent=Physo129751;rank=1 scaffold_9 . exon 89467 89575 . - . ID=Physo155833.7;Parent=Physo155833;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_9 . exon 89642 89709 . - . ID=Physo155833.6;Parent=Physo155833;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_9 . exon 89781 89844 . - . ID=Physo155833.5;Parent=Physo155833;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_9 . exon 89942 90032 . - . ID=Physo155833.4;Parent=Physo155833;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . exon 90108 90213 . - . ID=Physo155833.3;Parent=Physo155833;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . exon 90291 90438 . - . ID=Physo155833.2;Parent=Physo155833;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . exon 90521 90605 . - . ID=Physo155833.1;Parent=Physo155833;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 92934 94291 . + . ID=Physo155835;biotype=protein_coding;external_name=C_scaffold_9000015;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 92934 94291 . + . ID=Physo155835;Parent=Physo155835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 92934 93061 . + 0 ID=Physo155835;Parent=Physo155835;rank=1 scaffold_9 . exon 92934 93061 . + . ID=Physo155835.1;Parent=Physo155835;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 93151 93347 . + 0 ID=Physo155835;Parent=Physo155835;rank=2 scaffold_9 . exon 93151 93347 . + . ID=Physo155835.2;Parent=Physo155835;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 93417 93470 . + 0 ID=Physo155835;Parent=Physo155835;rank=3 scaffold_9 . exon 93417 93470 . + . ID=Physo155835.3;Parent=Physo155835;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 93738 94291 . + 0 ID=Physo155835;Parent=Physo155835;rank=4 scaffold_9 . exon 93738 94291 . + . ID=Physo155835.4;Parent=Physo155835;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 94352 96595 . - . ID=Physo155838;biotype=protein_coding;external_name=C_scaffold_9000018;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 94352 96595 . - . ID=Physo155838;Parent=Physo155838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 94352 94621 . - 0 ID=Physo155838;Parent=Physo155838;rank=6 scaffold_9 . exon 94352 94621 . - . ID=Physo155838.6;Parent=Physo155838;constitutive=1;rank=6 scaffold_9 . CDS 94643 94875 . - 0 ID=Physo155838;Parent=Physo155838;rank=5 scaffold_9 . exon 94643 94875 . - . ID=Physo155838.5;Parent=Physo155838;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 95065 95235 . - 0 ID=Physo155838;Parent=Physo155838;rank=4 scaffold_9 . exon 95065 95235 . - . ID=Physo155838.4;Parent=Physo155838;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 95461 95655 . - 0 ID=Physo155838;Parent=Physo155838;rank=3 scaffold_9 . exon 95461 95655 . - . ID=Physo155838.3;Parent=Physo155838;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 95677 95784 . - 0 ID=Physo155838;Parent=Physo155838;rank=2 scaffold_9 . exon 95677 95784 . - . ID=Physo155838.2;Parent=Physo155838;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 95986 96595 . - 0 ID=Physo155838;Parent=Physo155838;rank=1 scaffold_9 . exon 95986 96595 . - . ID=Physo155838.1;Parent=Physo155838;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . biological_region 101377 101377 0.999 - . logic_name=eponine scaffold_9 . biological_region 101451 101458 0.999 + . logic_name=eponine scaffold_9 . biological_region 101983 101984 0.999 - . logic_name=eponine scaffold_9 . biological_region 102006 102014 0.999 - . logic_name=eponine scaffold_9 . biological_region 102030 102036 0.999 - . logic_name=eponine scaffold_9 . biological_region 102041 102043 0.999 - . logic_name=eponine scaffold_9 . biological_region 102068 102071 0.999 - . logic_name=eponine scaffold_9 . biological_region 102099 102105 0.999 - . logic_name=eponine scaffold_9 . biological_region 102121 102124 0.999 - . logic_name=eponine scaffold_9 . biological_region 102122 102127 0.999 + . logic_name=eponine scaffold_9 . biological_region 102337 102344 0.999 - . logic_name=eponine scaffold_9 . biological_region 102359 102363 0.999 - . logic_name=eponine scaffold_9 . biological_region 102416 102418 0.999 + . logic_name=eponine scaffold_9 . biological_region 103648 103659 0.999 - . logic_name=eponine scaffold_9 . biological_region 103680 103685 0.999 - . logic_name=eponine scaffold_9 . biological_region 106895 106897 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 100615 101534 . + . ID=Physo108411;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90007;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 100615 101534 . + . ID=Physo108411;Parent=Physo108411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 100615 100882 . + 0 ID=Physo108411;Parent=Physo108411;rank=1 scaffold_9 . exon 100615 100882 . + . ID=Physo108411.1;Parent=Physo108411;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 100948 101139 . + 0 ID=Physo108411;Parent=Physo108411;rank=2 scaffold_9 . exon 100948 101139 . + . ID=Physo108411.2;Parent=Physo108411;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 101292 101533 . + 0 ID=Physo108411;Parent=Physo108411;rank=3 scaffold_9 . exon 101292 101534 . + . ID=Physo108411.3;Parent=Physo108411;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_9 ensembl protein_coding_gene 101771 103064 . + . ID=Physo129753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90030;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 101771 103064 . + . ID=Physo129753;Parent=Physo129753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 101771 102861 . + 0 ID=Physo129753;Parent=Physo129753;rank=1 scaffold_9 . exon 101771 102861 . + . ID=Physo129753.1;Parent=Physo129753;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 102944 103064 . + 0 ID=Physo129753;Parent=Physo129753;rank=2 scaffold_9 . exon 102944 103064 . + . ID=Physo129753.2;Parent=Physo129753;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 104146 105678 . + . ID=Physo129754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90031;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 104146 105678 . + . ID=Physo129754;Parent=Physo129754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 104146 105678 . + 0 ID=Physo129754;Parent=Physo129754;rank=1 scaffold_9 . exon 104146 105678 . + . ID=Physo129754.1;Parent=Physo129754;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 107295 109071 . + . ID=Physo129756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90033;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 107295 109071 . + . ID=Physo129756;Parent=Physo129756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 107295 107656 . + 0 ID=Physo129756;Parent=Physo129756;rank=1 scaffold_9 . exon 107295 107656 . + . ID=Physo129756.1;Parent=Physo129756;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 107714 108002 . + 0 ID=Physo129756;Parent=Physo129756;rank=2 scaffold_9 . exon 107714 108002 . + . ID=Physo129756.2;Parent=Physo129756;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 108333 108591 . + 0 ID=Physo129756;Parent=Physo129756;rank=3 scaffold_9 . exon 108333 108591 . + . ID=Physo129756.3;Parent=Physo129756;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 108671 109071 . + 0 ID=Physo129756;Parent=Physo129756;rank=4 scaffold_9 . exon 108671 109071 . + . ID=Physo129756.4;Parent=Physo129756;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 105781 107035 . - . ID=Physo155840;biotype=protein_coding;external_name=C_scaffold_9000020;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 105781 107035 . - . ID=Physo155840;Parent=Physo155840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 105781 105994 . - 0 ID=Physo155840;Parent=Physo155840;rank=4 scaffold_9 . exon 105781 105994 . - . ID=Physo155840.4;Parent=Physo155840;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 106069 106207 . - 0 ID=Physo155840;Parent=Physo155840;rank=3 scaffold_9 . exon 106069 106207 . - . ID=Physo155840.3;Parent=Physo155840;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 106287 106447 . - 0 ID=Physo155840;Parent=Physo155840;rank=2 scaffold_9 . exon 106287 106447 . - . ID=Physo155840.2;Parent=Physo155840;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 106623 107035 . - 0 ID=Physo155840;Parent=Physo155840;rank=1 scaffold_9 . exon 106623 107035 . - . ID=Physo155840.1;Parent=Physo155840;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . repeat_region 114023 114047 . ? . description=trf scaffold_9 ensembl protein_coding_gene 110542 113352 . + . ID=Physo129757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90034;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 110542 113352 . + . ID=Physo129757;Parent=Physo129757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 110542 113292 . + 0 ID=Physo129757;Parent=Physo129757;rank=1 scaffold_9 . exon 110542 113352 . + . ID=Physo129757.1;Parent=Physo129757;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 113395 116121 . - . ID=Physo129758;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90035;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 113395 116121 . - . ID=Physo129758;Parent=Physo129758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 113395 116121 . - 0 ID=Physo129758;Parent=Physo129758;rank=1 scaffold_9 . exon 113395 116121 . - . ID=Physo129758.1;Parent=Physo129758;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 116852 119575 . - . ID=Physo129759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90036;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 116852 119575 . - . ID=Physo129759;Parent=Physo129759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 116852 119575 . - 0 ID=Physo129759;Parent=Physo129759;rank=1 scaffold_9 . exon 116852 119575 . - . ID=Physo129759.1;Parent=Physo129759;constitutive=1;rank=1 scaffold_9 . biological_region 119548 119550 0.999 + . logic_name=eponine scaffold_9 . biological_region 119680 119684 0.999 - . logic_name=eponine scaffold_9 . biological_region 119810 119814 0.999 + . logic_name=eponine scaffold_9 . biological_region 119887 119893 0.999 - . logic_name=eponine scaffold_9 . biological_region 120018 120021 0.999 - . logic_name=eponine scaffold_9 . biological_region 120039 120042 0.999 + . logic_name=eponine scaffold_9 . repeat_region 120160 120167 . ? . description=dust scaffold_9 . repeat_region 122799 122806 . ? . description=dust scaffold_9 . repeat_region 124135 124693 . + . description=GypsyPi-1c_I-int scaffold_9 . biological_region 124890 124893 0.999 + . logic_name=eponine scaffold_9 . repeat_region 125637 125823 . + . description=GypsyPi-1c_LTR scaffold_9 . repeat_region 125877 126150 . + . description=GypsyPi-1c_I-int scaffold_9 . repeat_region 126936 126998 . ? . description=dust scaffold_9 . biological_region 127955 127955 0.999 + . logic_name=eponine scaffold_9 . repeat_region 128505 129054 . + . description=GypsyPi-1c_I-int scaffold_9 ensembl protein_coding_gene 124430 125332 . - . ID=Physo129760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90037;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 124430 125332 . - . ID=Physo129760;Parent=Physo129760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 124430 124843 . - 0 ID=Physo129760;Parent=Physo129760;rank=3 scaffold_9 . exon 124430 124843 . - . ID=Physo129760.3;Parent=Physo129760;constitutive=1;rank=3 scaffold_9 . CDS 124897 125051 . - 0 ID=Physo129760;Parent=Physo129760;rank=2 scaffold_9 . exon 124897 125051 . - . ID=Physo129760.2;Parent=Physo129760;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 125317 125332 . - 0 ID=Physo129760;Parent=Physo129760;rank=1 scaffold_9 . exon 125317 125332 . - . ID=Physo129760.1;Parent=Physo129760;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 127522 128525 . + . ID=Physo129761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90038;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 127522 128525 . + . ID=Physo129761;Parent=Physo129761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 127522 128226 . + 0 ID=Physo129761;Parent=Physo129761;rank=1 scaffold_9 . exon 127522 128226 . + . ID=Physo129761.1;Parent=Physo129761;constitutive=1;rank=1 scaffold_9 . CDS 128298 128525 . + 0 ID=Physo129761;Parent=Physo129761;rank=2 scaffold_9 . exon 128298 128525 . + . ID=Physo129761.2;Parent=Physo129761;constitutive=1;rank=2 scaffold_9 . repeat_region 129181 131568 . ? . description=trf scaffold_9 . repeat_region 129181 131568 . ? . description=trf scaffold_9 . repeat_region 134916 134954 . ? . description=trf scaffold_9 ensembl protein_coding_gene 131571 135385 . + . ID=Physo129762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90039;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 131571 135385 . + . ID=Physo129762;Parent=Physo129762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 131571 132530 . + 0 ID=Physo129762;Parent=Physo129762;rank=1 scaffold_9 . exon 131571 132530 . + . ID=Physo129762.1;Parent=Physo129762;constitutive=1;rank=1 scaffold_9 . CDS 132764 133263 . + 0 ID=Physo129762;Parent=Physo129762;rank=2 scaffold_9 . exon 132764 133263 . + . ID=Physo129762.2;Parent=Physo129762;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 133374 133803 . + 0 ID=Physo129762;Parent=Physo129762;rank=3 scaffold_9 . exon 133374 133803 . + . ID=Physo129762.3;Parent=Physo129762;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 133945 134452 . + 0 ID=Physo129762;Parent=Physo129762;rank=4 scaffold_9 . exon 133945 134452 . + . ID=Physo129762.4;Parent=Physo129762;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . CDS 134678 134957 . + 0 ID=Physo129762;Parent=Physo129762;rank=5 scaffold_9 . exon 134678 134957 . + . ID=Physo129762.5;Parent=Physo129762;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_9 . CDS 135157 135385 . + 0 ID=Physo129762;Parent=Physo129762;rank=6 scaffold_9 . exon 135157 135385 . + . ID=Physo129762.6;Parent=Physo129762;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . biological_region 139230 139233 0.999 + . logic_name=eponine scaffold_9 . repeat_region 140290 140297 . ? . description=dust scaffold_9 . repeat_region 143391 143398 . ? . description=dust scaffold_9 . biological_region 143908 143916 0.999 + . logic_name=eponine scaffold_9 . repeat_region 145040 145047 . ? . description=dust scaffold_9 . repeat_region 147295 147302 . ? . description=dust scaffold_9 . repeat_region 151477 151539 . ? . description=trf scaffold_9 ensembl protein_coding_gene 157158 158635 . - . ID=Physo129763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90040;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 157158 158635 . - . ID=Physo129763;Parent=Physo129763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 157158 157435 . - 0 ID=Physo129763;Parent=Physo129763;rank=2 scaffold_9 . exon 157158 157435 . - . ID=Physo129763.2;Parent=Physo129763;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 157729 158635 . - 0 ID=Physo129763;Parent=Physo129763;rank=1 scaffold_9 . exon 157729 158635 . - . ID=Physo129763.1;Parent=Physo129763;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . repeat_region 159610 159624 . ? . description=dust scaffold_9 . biological_region 159952 159956 0.999 - . logic_name=eponine scaffold_9 . repeat_region 161655 166480 . ? . description=dust scaffold_9 . repeat_region 168342 168349 . ? . description=dust scaffold_9 . repeat_region 170588 170616 . ? . description=trf scaffold_9 . repeat_region 170911 170931 . ? . description=trf scaffold_9 . repeat_region 170942 171104 . ? . description=trf scaffold_9 . repeat_region 170942 171129 . ? . description=trf scaffold_9 . repeat_region 170942 171129 . ? . description=trf scaffold_9 . repeat_region 171136 171180 . ? . description=trf scaffold_9 ensembl protein_coding_gene 170404 171183 . + . ID=Physo129764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90041;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 170404 171183 . + . ID=Physo129764;Parent=Physo129764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 170404 171183 . + 0 ID=Physo129764;Parent=Physo129764;rank=1 scaffold_9 . exon 170404 171183 . + . ID=Physo129764.1;Parent=Physo129764;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 171957 173183 . + . ID=Physo129765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90042;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 171957 173183 . + . ID=Physo129765;Parent=Physo129765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 171957 173183 . + 0 ID=Physo129765;Parent=Physo129765;rank=1 scaffold_9 . exon 171957 173183 . + . ID=Physo129765.1;Parent=Physo129765;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 173604 174800 . + . ID=Physo129766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90043;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 173604 174800 . + . ID=Physo129766;Parent=Physo129766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 173604 174800 . + 0 ID=Physo129766;Parent=Physo129766;rank=1 scaffold_9 . exon 173604 174800 . + . ID=Physo129766.1;Parent=Physo129766;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 175425 177845 . + . ID=Physo129767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90044;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 175425 177845 . + . ID=Physo129767;Parent=Physo129767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 175425 177845 . + 0 ID=Physo129767;Parent=Physo129767;rank=1 scaffold_9 . exon 175425 177845 . + . ID=Physo129767.1;Parent=Physo129767;constitutive=1;rank=1 scaffold_9 . biological_region 180130 180130 0.999 + . logic_name=eponine scaffold_9 . biological_region 180918 180920 0.999 - . logic_name=eponine scaffold_9 . biological_region 186423 186423 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 179754 181136 . - . ID=Physo129768;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90045;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 179754 181136 . - . ID=Physo129768;Parent=Physo129768;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 179754 181136 . - 0 ID=Physo129768;Parent=Physo129768;rank=1 scaffold_9 . exon 179754 181136 . - . ID=Physo129768.1;Parent=Physo129768;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 183349 184035 . + . ID=Physo129769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90046;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 183349 184035 . + . ID=Physo129769;Parent=Physo129769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 183349 183582 . + 0 ID=Physo129769;Parent=Physo129769;rank=1 scaffold_9 . exon 183349 183582 . + . ID=Physo129769.1;Parent=Physo129769;constitutive=1;rank=1 scaffold_9 . CDS 183780 183950 . + 0 ID=Physo129769;Parent=Physo129769;rank=2 scaffold_9 . exon 183780 184035 . + . ID=Physo129769.2;Parent=Physo129769;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_9 ensembl protein_coding_gene 184817 194898 . - . ID=Physo155841;biotype=protein_coding;external_name=C_scaffold_9000021;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 184817 194898 . - . ID=Physo155841;Parent=Physo155841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 184817 184819 . - 0 ID=Physo155841;Parent=Physo155841;rank=13 scaffold_9 . exon 184817 184819 . - . ID=Physo155841.13;Parent=Physo155841;constitutive=1;rank=13 scaffold_9 . CDS 184867 184917 . - 0 ID=Physo155841;Parent=Physo155841;rank=12 scaffold_9 . exon 184867 184917 . - . ID=Physo155841.12;Parent=Physo155841;constitutive=1;rank=12 scaffold_9 . CDS 184992 185052 . - 0 ID=Physo155841;Parent=Physo155841;rank=11 scaffold_9 . exon 184992 185052 . - . ID=Physo155841.11;Parent=Physo155841;constitutive=1;ensembl_phase=2;rank=11 scaffold_9 . CDS 185122 185230 . - 0 ID=Physo155841;Parent=Physo155841;rank=10 scaffold_9 . exon 185122 185230 . - . ID=Physo155841.10;Parent=Physo155841;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_9 . CDS 185301 185414 . - 0 ID=Physo155841;Parent=Physo155841;rank=9 scaffold_9 . exon 185301 185414 . - . ID=Physo155841.9;Parent=Physo155841;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_9 . CDS 185616 188557 . - 0 ID=Physo155841;Parent=Physo155841;rank=8 scaffold_9 . exon 185616 188557 . - . ID=Physo155841.8;Parent=Physo155841;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_9 . CDS 188882 190924 . - 0 ID=Physo155841;Parent=Physo155841;rank=7 scaffold_9 . CDS 191042 192081 . - 0 ID=Physo155841;Parent=Physo155841;rank=6 scaffold_9 . CDS 192151 192596 . - 0 ID=Physo155841;Parent=Physo155841;rank=5 scaffold_9 . CDS 192630 192944 . - 0 ID=Physo155841;Parent=Physo155841;rank=4 scaffold_9 . CDS 192990 193791 . - 0 ID=Physo155841;Parent=Physo155841;rank=3 scaffold_9 . CDS 193906 194244 . - 0 ID=Physo155841;Parent=Physo155841;rank=2 scaffold_9 . CDS 194293 194898 . - 0 ID=Physo155841;Parent=Physo155841;rank=1 scaffold_9 ensembl protein_coding_gene 196582 197665 . + . ID=Physo129771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90048;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 196582 197665 . + . ID=Physo129771;Parent=Physo129771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 196582 196950 . + 0 ID=Physo129771;Parent=Physo129771;rank=1 scaffold_9 . exon 196582 196950 . + . ID=Physo129771.1;Parent=Physo129771;constitutive=1;rank=1 scaffold_9 . CDS 197009 197665 . + 0 ID=Physo129771;Parent=Physo129771;rank=2 scaffold_9 . exon 197009 197665 . + . ID=Physo129771.2;Parent=Physo129771;constitutive=1;rank=2 scaffold_9 . exon 188882 190924 . - . ID=Physo155841.7;Parent=Physo155841;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_9 . exon 191042 192081 . - . ID=Physo155841.6;Parent=Physo155841;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . exon 192151 192596 . - . ID=Physo155841.5;Parent=Physo155841;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . exon 192630 192944 . - . ID=Physo155841.4;Parent=Physo155841;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . exon 192990 193791 . - . ID=Physo155841.3;Parent=Physo155841;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . exon 193906 194244 . - . ID=Physo155841.2;Parent=Physo155841;constitutive=1;rank=2 scaffold_9 . exon 194293 194898 . - . ID=Physo155841.1;Parent=Physo155841;constitutive=1;rank=1 scaffold_9 . repeat_region 198323 198365 . ? . description=trf scaffold_9 . repeat_region 201920 201955 . ? . description=trf scaffold_9 . repeat_region 202055 202118 . ? . description=trf scaffold_9 . biological_region 202522 202527 0.999 - . logic_name=eponine scaffold_9 . biological_region 203824 203827 0.999 - . logic_name=eponine scaffold_9 . biological_region 208043 208046 0.999 + . logic_name=eponine scaffold_9 . biological_region 208054 208059 0.999 - . logic_name=eponine scaffold_9 . biological_region 208081 208086 0.999 + . logic_name=eponine scaffold_9 . biological_region 208132 208136 0.999 - . logic_name=eponine scaffold_9 . biological_region 208208 208208 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 198534 201797 . + . ID=Physo129772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90049;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 198534 201797 . + . ID=Physo129772;Parent=Physo129772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 198534 199619 . + 0 ID=Physo129772;Parent=Physo129772;rank=1 scaffold_9 . exon 198534 199619 . + . ID=Physo129772.1;Parent=Physo129772;constitutive=1;rank=1 scaffold_9 . CDS 199763 199822 . + 0 ID=Physo129772;Parent=Physo129772;rank=2 scaffold_9 . exon 199763 199822 . + . ID=Physo129772.2;Parent=Physo129772;constitutive=1;rank=2 scaffold_9 . CDS 199988 200111 . + 0 ID=Physo129772;Parent=Physo129772;rank=3 scaffold_9 . exon 199988 200111 . + . ID=Physo129772.3;Parent=Physo129772;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 200183 200677 . + 0 ID=Physo129772;Parent=Physo129772;rank=4 scaffold_9 . exon 200183 200677 . + . ID=Physo129772.4;Parent=Physo129772;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 200741 200861 . + 0 ID=Physo129772;Parent=Physo129772;rank=5 scaffold_9 . exon 200741 200861 . + . ID=Physo129772.5;Parent=Physo129772;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_9 . CDS 200933 201330 . + 0 ID=Physo129772;Parent=Physo129772;rank=6 scaffold_9 . exon 200933 201330 . + . ID=Physo129772.6;Parent=Physo129772;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 201396 201481 . + 0 ID=Physo129772;Parent=Physo129772;rank=7 scaffold_9 . exon 201396 201481 . + . ID=Physo129772.7;Parent=Physo129772;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 201543 201797 . + 0 ID=Physo129772;Parent=Physo129772;rank=8 scaffold_9 . exon 201543 201797 . + . ID=Physo129772.8;Parent=Physo129772;constitutive=1;rank=8 scaffold_9 ensembl protein_coding_gene 205304 208618 . - . ID=Physo129774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90051;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 205304 208618 . - . ID=Physo129774;Parent=Physo129774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 205304 208618 . - 0 ID=Physo129774;Parent=Physo129774;rank=1 scaffold_9 . exon 205304 208618 . - . ID=Physo129774.1;Parent=Physo129774;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 202190 205138 . + . ID=Physo155843;biotype=protein_coding;external_name=C_scaffold_9000023;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 202190 205138 . + . ID=Physo155843;Parent=Physo155843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 202190 203508 . + 0 ID=Physo155843;Parent=Physo155843;rank=1 scaffold_9 . exon 202190 203508 . + . ID=Physo155843.1;Parent=Physo155843;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 203530 203750 . + 0 ID=Physo155843;Parent=Physo155843;rank=2 scaffold_9 . exon 203530 203750 . + . ID=Physo155843.2;Parent=Physo155843;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 203889 204245 . + 0 ID=Physo155843;Parent=Physo155843;rank=3 scaffold_9 . exon 203889 204245 . + . ID=Physo155843.3;Parent=Physo155843;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 204438 204803 . + 0 ID=Physo155843;Parent=Physo155843;rank=4 scaffold_9 . exon 204438 204803 . + . ID=Physo155843.4;Parent=Physo155843;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 205008 205138 . + 0 ID=Physo155843;Parent=Physo155843;rank=5 scaffold_9 . exon 205008 205138 . + . ID=Physo155843.5;Parent=Physo155843;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . repeat_region 208543 208598 . ? . description=dust scaffold_9 ensembl protein_coding_gene 209854 211167 . + . ID=Physo129775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90052;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 209854 211167 . + . ID=Physo129775;Parent=Physo129775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 209854 211167 . + 0 ID=Physo129775;Parent=Physo129775;rank=1 scaffold_9 . exon 209854 211167 . + . ID=Physo129775.1;Parent=Physo129775;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 211992 214570 . + . ID=Physo129776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90053;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 211992 214570 . + . ID=Physo129776;Parent=Physo129776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 211992 214436 . + 0 ID=Physo129776;Parent=Physo129776;rank=1 scaffold_9 . exon 211992 214570 . + . ID=Physo129776.1;Parent=Physo129776;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 214536 215273 . - . ID=Physo129777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90054;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 214536 215273 . - . ID=Physo129777;Parent=Physo129777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 214536 215273 . - . ID=Physo129777.1;Parent=Physo129777;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 214555 215160 . - 0 ID=Physo129777;Parent=Physo129777;rank=1 scaffold_9 . biological_region 222311 222316 0.999 - . logic_name=eponine scaffold_9 . biological_region 227507 227509 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 225787 229228 . - . ID=Physo129778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90055;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 225787 229228 . - . ID=Physo129778;Parent=Physo129778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 225787 225796 . - 0 ID=Physo129778;Parent=Physo129778;rank=12 scaffold_9 . exon 225787 225796 . - . ID=Physo129778.12;Parent=Physo129778;constitutive=1;ensembl_phase=2;rank=12 scaffold_9 . CDS 225860 226135 . - 0 ID=Physo129778;Parent=Physo129778;rank=11 scaffold_9 . exon 225860 226135 . - . ID=Physo129778.11;Parent=Physo129778;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_9 . CDS 226212 226447 . - 0 ID=Physo129778;Parent=Physo129778;rank=10 scaffold_9 . exon 226212 226447 . - . ID=Physo129778.10;Parent=Physo129778;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_9 . CDS 226931 227040 . - 0 ID=Physo129778;Parent=Physo129778;rank=9 scaffold_9 . exon 226931 227040 . - . ID=Physo129778.9;Parent=Physo129778;constitutive=1;ensembl_phase=1;rank=9 scaffold_9 . CDS 227085 227337 . - 0 ID=Physo129778;Parent=Physo129778;rank=8 scaffold_9 . exon 227085 227337 . - . ID=Physo129778.8;Parent=Physo129778;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_9 . CDS 227413 227571 . - 0 ID=Physo129778;Parent=Physo129778;rank=7 scaffold_9 . exon 227413 227571 . - . ID=Physo129778.7;Parent=Physo129778;constitutive=1;rank=7 scaffold_9 . CDS 227627 227684 . - 0 ID=Physo129778;Parent=Physo129778;rank=6 scaffold_9 . exon 227627 227684 . - . ID=Physo129778.6;Parent=Physo129778;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 227731 227738 . - 0 ID=Physo129778;Parent=Physo129778;rank=5 scaffold_9 . exon 227731 227738 . - . ID=Physo129778.5;Parent=Physo129778;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 227881 228040 . - 0 ID=Physo129778;Parent=Physo129778;rank=4 scaffold_9 . exon 227881 228040 . - . ID=Physo129778.4;Parent=Physo129778;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 228128 228256 . - 0 ID=Physo129778;Parent=Physo129778;rank=3 scaffold_9 . CDS 228329 228450 . - 0 ID=Physo129778;Parent=Physo129778;rank=2 scaffold_9 . CDS 228531 229220 . - 0 ID=Physo129778;Parent=Physo129778;rank=1 scaffold_9 . repeat_region 228547 228590 . ? . description=trf scaffold_9 . repeat_region 229793 229812 . ? . description=trf scaffold_9 . repeat_region 235662 235686 . ? . description=trf scaffold_9 . exon 228128 228256 . - . ID=Physo129778.3;Parent=Physo129778;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . exon 228329 228450 . - . ID=Physo129778.2;Parent=Physo129778;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . exon 228531 229228 . - . ID=Physo129778.1;Parent=Physo129778;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 231154 233156 . + . ID=Physo129780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90057;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 231154 233156 . + . ID=Physo129780;Parent=Physo129780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 231154 231256 . + 0 ID=Physo129780;Parent=Physo129780;rank=1 scaffold_9 . exon 231154 231256 . + . ID=Physo129780.1;Parent=Physo129780;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 231364 231440 . + 0 ID=Physo129780;Parent=Physo129780;rank=2 scaffold_9 . exon 231364 231440 . + . ID=Physo129780.2;Parent=Physo129780;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 231502 231951 . + 0 ID=Physo129780;Parent=Physo129780;rank=3 scaffold_9 . exon 231502 231951 . + . ID=Physo129780.3;Parent=Physo129780;constitutive=1;rank=3 scaffold_9 . CDS 232014 232180 . + 0 ID=Physo129780;Parent=Physo129780;rank=4 scaffold_9 . exon 232014 232180 . + . ID=Physo129780.4;Parent=Physo129780;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 232215 232749 . + 0 ID=Physo129780;Parent=Physo129780;rank=5 scaffold_9 . exon 232215 232749 . + . ID=Physo129780.5;Parent=Physo129780;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 232814 232991 . + 0 ID=Physo129780;Parent=Physo129780;rank=6 scaffold_9 . exon 232814 232991 . + . ID=Physo129780.6;Parent=Physo129780;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_9 . CDS 233065 233156 . + 0 ID=Physo129780;Parent=Physo129780;rank=7 scaffold_9 . exon 233065 233156 . + . ID=Physo129780.7;Parent=Physo129780;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 ensembl protein_coding_gene 233370 236183 . - . ID=Physo129781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90058;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 233370 236183 . - . ID=Physo129781;Parent=Physo129781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 233370 233695 . - 0 ID=Physo129781;Parent=Physo129781;rank=3 scaffold_9 . exon 233370 233695 . - . ID=Physo129781.3;Parent=Physo129781;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 233751 235688 . - 0 ID=Physo129781;Parent=Physo129781;rank=2 scaffold_9 . exon 233751 235688 . - . ID=Physo129781.2;Parent=Physo129781;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 235805 236183 . - 0 ID=Physo129781;Parent=Physo129781;rank=1 scaffold_9 . exon 235805 236183 . - . ID=Physo129781.1;Parent=Physo129781;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 237181 239581 . - . ID=Physo129782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90059;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 237181 239581 . - . ID=Physo129782;Parent=Physo129782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 237181 237540 . - 0 ID=Physo129782;Parent=Physo129782;rank=3 scaffold_9 . exon 237181 237540 . - . ID=Physo129782.3;Parent=Physo129782;constitutive=1;rank=3 scaffold_9 . CDS 237613 239030 . - 0 ID=Physo129782;Parent=Physo129782;rank=2 scaffold_9 . exon 237613 239030 . - . ID=Physo129782.2;Parent=Physo129782;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 239104 239581 . - 0 ID=Physo129782;Parent=Physo129782;rank=1 scaffold_9 ensembl protein_coding_gene 229414 230911 . + . ID=Physo155847;biotype=protein_coding;external_name=C_scaffold_9000027;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 229414 230911 . + . ID=Physo155847;Parent=Physo155847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 229414 229578 . + 0 ID=Physo155847;Parent=Physo155847;rank=1 scaffold_9 . exon 229414 229578 . + . ID=Physo155847.1;Parent=Physo155847;constitutive=1;rank=1 scaffold_9 . CDS 229606 230410 . + 0 ID=Physo155847;Parent=Physo155847;rank=2 scaffold_9 . exon 229606 230410 . + . ID=Physo155847.2;Parent=Physo155847;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 230491 230675 . + 0 ID=Physo155847;Parent=Physo155847;rank=3 scaffold_9 . exon 230491 230675 . + . ID=Physo155847.3;Parent=Physo155847;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 230756 230911 . + 0 ID=Physo155847;Parent=Physo155847;rank=4 scaffold_9 . exon 230756 230911 . + . ID=Physo155847.4;Parent=Physo155847;constitutive=1;rank=4 scaffold_9 . biological_region 239477 239479 0.999 + . logic_name=eponine scaffold_9 . biological_region 239548 239550 0.999 - . logic_name=eponine scaffold_9 . biological_region 239575 239576 0.999 - . logic_name=eponine scaffold_9 . biological_region 240024 240028 0.999 + . logic_name=eponine scaffold_9 . biological_region 240502 240506 0.999 + . logic_name=eponine scaffold_9 . biological_region 240557 240562 0.999 + . logic_name=eponine scaffold_9 . biological_region 240623 240626 0.999 + . logic_name=eponine scaffold_9 . biological_region 240688 240692 0.999 - . logic_name=eponine scaffold_9 . biological_region 240798 240800 0.999 + . logic_name=eponine scaffold_9 . biological_region 240938 240941 0.999 - . logic_name=eponine scaffold_9 . biological_region 241065 241066 0.999 + . logic_name=eponine scaffold_9 . repeat_region 242316 242336 . ? . description=dust scaffold_9 . biological_region 242896 242902 0.999 - . logic_name=eponine scaffold_9 . biological_region 242914 242921 0.999 - . logic_name=eponine scaffold_9 . biological_region 242952 242956 0.999 + . logic_name=eponine scaffold_9 . biological_region 242978 242978 0.999 + . logic_name=eponine scaffold_9 . biological_region 244331 244337 0.999 + . logic_name=eponine scaffold_9 . biological_region 244741 244742 0.999 - . logic_name=eponine scaffold_9 . biological_region 244771 244773 0.999 + . logic_name=eponine scaffold_9 . biological_region 244778 244780 0.999 + . logic_name=eponine scaffold_9 . biological_region 244800 244803 0.999 - . logic_name=eponine scaffold_9 . biological_region 245868 245868 0.999 - . logic_name=eponine scaffold_9 . biological_region 246820 246825 0.999 + . logic_name=eponine scaffold_9 . biological_region 246847 246857 0.999 + . logic_name=eponine scaffold_9 . repeat_region 246882 246934 . ? . description=dust scaffold_9 . biological_region 246909 246913 0.999 - . logic_name=eponine scaffold_9 . biological_region 247035 247037 0.999 + . logic_name=eponine scaffold_9 . biological_region 247102 247105 0.999 + . logic_name=eponine scaffold_9 . biological_region 247108 247116 0.999 - . logic_name=eponine scaffold_9 . biological_region 247124 247130 0.999 + . logic_name=eponine scaffold_9 . exon 239104 239581 . - . ID=Physo129782.1;Parent=Physo129782;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 240401 241722 . + . ID=Physo129783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90060;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 240401 241722 . + . ID=Physo129783;Parent=Physo129783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 240401 241722 . + . ID=Physo129783.1;Parent=Physo129783;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 240436 241722 . + 0 ID=Physo129783;Parent=Physo129783;rank=1 scaffold_9 ensembl protein_coding_gene 242657 243931 . + . ID=Physo129784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90061;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 242657 243931 . + . ID=Physo129784;Parent=Physo129784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 242657 243931 . + 0 ID=Physo129784;Parent=Physo129784;rank=1 scaffold_9 . exon 242657 243931 . + . ID=Physo129784.1;Parent=Physo129784;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 244389 245086 . - . ID=Physo129785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90062;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 244389 245086 . - . ID=Physo129785;Parent=Physo129785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 244389 244943 . - 0 ID=Physo129785;Parent=Physo129785;rank=2 scaffold_9 . exon 244389 244943 . - . ID=Physo129785.2;Parent=Physo129785;constitutive=1;rank=2 scaffold_9 . CDS 245036 245086 . - 0 ID=Physo129785;Parent=Physo129785;rank=1 scaffold_9 . exon 245036 245086 . - . ID=Physo129785.1;Parent=Physo129785;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 246850 248424 . + . ID=Physo129786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90063;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 246850 248424 . + . ID=Physo129786;Parent=Physo129786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 246850 248424 . + 0 ID=Physo129786;Parent=Physo129786;rank=1 scaffold_9 . exon 246850 248424 . + . ID=Physo129786.1;Parent=Physo129786;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 249075 251337 . - . ID=Physo129787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90064;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 249075 251337 . - . ID=Physo129787;Parent=Physo129787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 249075 250018 . - 0 ID=Physo129787;Parent=Physo129787;rank=3 scaffold_9 . exon 249075 250018 . - . ID=Physo129787.3;Parent=Physo129787;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 250075 250150 . - 0 ID=Physo129787;Parent=Physo129787;rank=2 scaffold_9 . exon 250075 250150 . - . ID=Physo129787.2;Parent=Physo129787;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 250345 251337 . - 0 ID=Physo129787;Parent=Physo129787;rank=1 scaffold_9 . exon 250345 251337 . - . ID=Physo129787.1;Parent=Physo129787;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 252871 255904 . - . ID=Physo129788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90065;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 252871 255904 . - . ID=Physo129788;Parent=Physo129788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 252871 253090 . - 0 ID=Physo129788;Parent=Physo129788;rank=10 scaffold_9 . exon 252871 253090 . - . ID=Physo129788.10;Parent=Physo129788;constitutive=1;ensembl_phase=2;rank=10 scaffold_9 . CDS 253162 253388 . - 0 ID=Physo129788;Parent=Physo129788;rank=9 scaffold_9 . exon 253162 253388 . - . ID=Physo129788.9;Parent=Physo129788;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_9 . CDS 253451 253552 . - 0 ID=Physo129788;Parent=Physo129788;rank=8 scaffold_9 . exon 253451 253552 . - . ID=Physo129788.8;Parent=Physo129788;constitutive=1;rank=8 scaffold_9 . CDS 253642 253875 . - 0 ID=Physo129788;Parent=Physo129788;rank=7 scaffold_9 . exon 253642 253875 . - . ID=Physo129788.7;Parent=Physo129788;constitutive=1;rank=7 scaffold_9 . CDS 253953 254030 . - 0 ID=Physo129788;Parent=Physo129788;rank=6 scaffold_9 . exon 253953 254030 . - . ID=Physo129788.6;Parent=Physo129788;constitutive=1;rank=6 scaffold_9 . CDS 254560 254742 . - 0 ID=Physo129788;Parent=Physo129788;rank=5 scaffold_9 . exon 254560 254742 . - . ID=Physo129788.5;Parent=Physo129788;constitutive=1;rank=5 scaffold_9 . CDS 254815 255188 . - 0 ID=Physo129788;Parent=Physo129788;rank=4 scaffold_9 . exon 254815 255188 . - . ID=Physo129788.4;Parent=Physo129788;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 255273 255420 . - 0 ID=Physo129788;Parent=Physo129788;rank=3 scaffold_9 . exon 255273 255420 . - . ID=Physo129788.3;Parent=Physo129788;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 255510 255594 . - 0 ID=Physo129788;Parent=Physo129788;rank=2 scaffold_9 . exon 255510 255594 . - . ID=Physo129788.2;Parent=Physo129788;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 255687 255904 . - 0 ID=Physo129788;Parent=Physo129788;rank=1 scaffold_9 . exon 255687 255904 . - . ID=Physo129788.1;Parent=Physo129788;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 256055 257415 . + . ID=Physo129789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90066;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 256055 257415 . + . ID=Physo129789;Parent=Physo129789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 256055 257251 . + 0 ID=Physo129789;Parent=Physo129789;rank=1 scaffold_9 . exon 256055 257251 . + . ID=Physo129789.1;Parent=Physo129789;constitutive=1;rank=1 scaffold_9 . CDS 257374 257415 . + 0 ID=Physo129789;Parent=Physo129789;rank=2 scaffold_9 . exon 257374 257415 . + . ID=Physo129789.2;Parent=Physo129789;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 266638 269496 . + . ID=Physo129790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90067;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 266638 269496 . + . ID=Physo129790;Parent=Physo129790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 266638 267445 . + 0 ID=Physo129790;Parent=Physo129790;rank=1 scaffold_9 . exon 266638 267445 . + . ID=Physo129790.1;Parent=Physo129790;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 267584 267753 . + 0 ID=Physo129790;Parent=Physo129790;rank=2 scaffold_9 . exon 267584 267753 . + . ID=Physo129790.2;Parent=Physo129790;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 268447 269496 . + 0 ID=Physo129790;Parent=Physo129790;rank=3 scaffold_9 . biological_region 271164 271167 0.999 + . logic_name=eponine scaffold_9 . biological_region 271488 271489 0.999 - . logic_name=eponine scaffold_9 . biological_region 273603 273604 0.999 + . logic_name=eponine scaffold_9 . biological_region 273925 273928 0.999 - . logic_name=eponine scaffold_9 . biological_region 274425 274430 0.999 + . logic_name=eponine scaffold_9 . biological_region 274538 274542 0.999 - . logic_name=eponine scaffold_9 . biological_region 274800 274806 0.999 + . logic_name=eponine scaffold_9 . biological_region 274811 274812 0.999 - . logic_name=eponine scaffold_9 . biological_region 274864 274870 0.999 + . logic_name=eponine scaffold_9 . biological_region 275073 275075 0.999 + . logic_name=eponine scaffold_9 . biological_region 275267 275270 0.999 - . logic_name=eponine scaffold_9 . repeat_region 275425 275715 . ? . description=dust scaffold_9 . exon 268447 269496 . + . ID=Physo129790.3;Parent=Physo129790;constitutive=1;rank=3 scaffold_9 ensembl protein_coding_gene 270525 272287 . + . ID=Physo129791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90068;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 270525 272287 . + . ID=Physo129791;Parent=Physo129791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 270525 270743 . + 0 ID=Physo129791;Parent=Physo129791;rank=1 scaffold_9 . exon 270525 270743 . + . ID=Physo129791.1;Parent=Physo129791;constitutive=1;rank=1 scaffold_9 . CDS 270839 272287 . + 0 ID=Physo129791;Parent=Physo129791;rank=2 scaffold_9 . exon 270839 272287 . + . ID=Physo129791.2;Parent=Physo129791;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 272690 274731 . - . ID=Physo129792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90069;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 272690 274731 . - . ID=Physo129792;Parent=Physo129792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 272690 274252 . - . ID=Physo129792.2;Parent=Physo129792;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_9 . CDS 272894 274252 . - 0 ID=Physo129792;Parent=Physo129792;rank=2 scaffold_9 . CDS 274348 274581 . - 0 ID=Physo129792;Parent=Physo129792;rank=1 scaffold_9 . exon 274348 274731 . - . ID=Physo129792.1;Parent=Physo129792;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 276904 277813 . + . ID=Physo129793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90070;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 276904 277813 . + . ID=Physo129793;Parent=Physo129793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 276904 277311 . + 0 ID=Physo129793;Parent=Physo129793;rank=1 scaffold_9 . exon 276904 277311 . + . ID=Physo129793.1;Parent=Physo129793;constitutive=1;rank=1 scaffold_9 . CDS 277383 277505 . + 0 ID=Physo129793;Parent=Physo129793;rank=2 scaffold_9 . exon 277383 277505 . + . ID=Physo129793.2;Parent=Physo129793;constitutive=1;rank=2 scaffold_9 . CDS 277580 277813 . + 0 ID=Physo129793;Parent=Physo129793;rank=3 scaffold_9 . exon 277580 277813 . + . ID=Physo129793.3;Parent=Physo129793;constitutive=1;rank=3 scaffold_9 . repeat_region 290127 290136 . ? . description=dust scaffold_9 . repeat_region 290468 290519 . ? . description=trf scaffold_9 . repeat_region 290488 290533 . ? . description=dust scaffold_9 ensembl protein_coding_gene 290523 293862 . + . ID=Physo129795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90072;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 290523 293862 . + . ID=Physo129795;Parent=Physo129795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 290523 290582 . + . ID=Physo129795.1;Parent=Physo129795;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 290543 290582 . + 0 ID=Physo129795;Parent=Physo129795;rank=1 scaffold_9 . CDS 290668 293044 . + 0 ID=Physo129795;Parent=Physo129795;rank=2 scaffold_9 . exon 290668 293044 . + . ID=Physo129795.2;Parent=Physo129795;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 293127 293286 . + 0 ID=Physo129795;Parent=Physo129795;rank=3 scaffold_9 . exon 293127 293862 . + . ID=Physo129795.3;Parent=Physo129795;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_9 ensembl protein_coding_gene 293958 296411 . - . ID=Physo129796;biotype=protein_coding;description=STIP [Source:UniProtKB/TrEMBL%3BAcc:A1XDC3];external_name=estExt_fgenesh1_pg.C_90073;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 293958 296411 . - . ID=Physo129796;Parent=Physo129796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 293958 296411 . - 0 ID=Physo129796;Parent=Physo129796;rank=1 scaffold_9 . exon 293958 296411 . - . ID=Physo129796.1;Parent=Physo129796;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 296627 297183 . - . ID=Physo129797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90074;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 296627 297183 . - . ID=Physo129797;Parent=Physo129797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 296627 296829 . - 0 ID=Physo129797;Parent=Physo129797;rank=2 scaffold_9 . exon 296627 296829 . - . ID=Physo129797.2;Parent=Physo129797;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 296919 297183 . - 0 ID=Physo129797;Parent=Physo129797;rank=1 scaffold_9 . exon 296919 297183 . - . ID=Physo129797.1;Parent=Physo129797;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 288302 289967 . + . ID=Physo155849;biotype=protein_coding;external_name=C_scaffold_9000029;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 288302 289967 . + . ID=Physo155849;Parent=Physo155849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 288302 288500 . + 0 ID=Physo155849;Parent=Physo155849;rank=1 scaffold_9 . exon 288302 288500 . + . ID=Physo155849.1;Parent=Physo155849;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 288580 289531 . + 0 ID=Physo155849;Parent=Physo155849;rank=2 scaffold_9 . exon 288580 289531 . + . ID=Physo155849.2;Parent=Physo155849;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 289592 289967 . + 0 ID=Physo155849;Parent=Physo155849;rank=3 scaffold_9 . exon 289592 289967 . + . ID=Physo155849.3;Parent=Physo155849;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . biological_region 302824 302826 0.999 + . logic_name=eponine scaffold_9 . biological_region 305193 305194 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 302805 303507 . - . ID=Physo129798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90075;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 302805 303507 . - . ID=Physo129798;Parent=Physo129798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 302805 302957 . - 0 ID=Physo129798;Parent=Physo129798;rank=4 scaffold_9 . exon 302805 302957 . - . ID=Physo129798.4;Parent=Physo129798;constitutive=1;rank=4 scaffold_9 . CDS 303008 303124 . - 0 ID=Physo129798;Parent=Physo129798;rank=3 scaffold_9 . exon 303008 303124 . - . ID=Physo129798.3;Parent=Physo129798;constitutive=1;rank=3 scaffold_9 . CDS 303152 303354 . - 0 ID=Physo129798;Parent=Physo129798;rank=2 scaffold_9 . exon 303152 303354 . - . ID=Physo129798.2;Parent=Physo129798;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 303477 303507 . - 0 ID=Physo129798;Parent=Physo129798;rank=1 scaffold_9 . exon 303477 303507 . - . ID=Physo129798.1;Parent=Physo129798;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 304488 305384 . - . ID=Physo129799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90076;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 304488 305384 . - . ID=Physo129799;Parent=Physo129799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 304488 305384 . - 0 ID=Physo129799;Parent=Physo129799;rank=1 scaffold_9 . exon 304488 305384 . - . ID=Physo129799.1;Parent=Physo129799;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 306446 311429 . - . ID=Physo129800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90077;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 306446 311429 . - . ID=Physo129800;Parent=Physo129800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 306446 310898 . - . ID=Physo129800.3;Parent=Physo129800;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_9 . CDS 306637 310898 . - 0 ID=Physo129800;Parent=Physo129800;rank=3 scaffold_9 . CDS 311011 311191 . - 0 ID=Physo129800;Parent=Physo129800;rank=2 scaffold_9 . CDS 311274 311429 . - 0 ID=Physo129800;Parent=Physo129800;rank=1 scaffold_9 . repeat_region 311020 311153 . + . description=(TCG)n scaffold_9 . repeat_region 311084 311116 . ? . description=trf scaffold_9 . repeat_region 311196 311203 . ? . description=dust scaffold_9 . repeat_region 311312 311357 . ? . description=trf scaffold_9 . repeat_region 311313 311342 . ? . description=trf scaffold_9 . repeat_region 311313 311365 . ? . description=dust scaffold_9 . exon 311011 311191 . - . ID=Physo129800.2;Parent=Physo129800;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . exon 311274 311429 . - . ID=Physo129800.1;Parent=Physo129800;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 311977 313700 . + . ID=Physo129801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90078;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 311977 313700 . + . ID=Physo129801;Parent=Physo129801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 311977 312673 . + 0 ID=Physo129801;Parent=Physo129801;rank=1 scaffold_9 . exon 311977 312673 . + . ID=Physo129801.1;Parent=Physo129801;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 312759 313230 . + 0 ID=Physo129801;Parent=Physo129801;rank=2 scaffold_9 . exon 312759 313230 . + . ID=Physo129801.2;Parent=Physo129801;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 313444 313646 . + 0 ID=Physo129801;Parent=Physo129801;rank=3 scaffold_9 . exon 313444 313646 . + . ID=Physo129801.3;Parent=Physo129801;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 313681 313700 . + 0 ID=Physo129801;Parent=Physo129801;rank=4 scaffold_9 . exon 313681 313700 . + . ID=Physo129801.4;Parent=Physo129801;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . repeat_region 336845 336895 . ? . description=trf scaffold_9 . repeat_region 336849 336897 . ? . description=dust scaffold_9 . repeat_region 336854 336897 . ? . description=trf scaffold_9 ensembl protein_coding_gene 331695 338561 . + . ID=Physo155853;biotype=protein_coding;external_name=C_scaffold_9000033;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 331695 338561 . + . ID=Physo155853;Parent=Physo155853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 331695 332171 . + 0 ID=Physo155853;Parent=Physo155853;rank=1 scaffold_9 . exon 331695 332171 . + . ID=Physo155853.1;Parent=Physo155853;constitutive=1;rank=1 scaffold_9 . CDS 333204 333953 . + 0 ID=Physo155853;Parent=Physo155853;rank=2 scaffold_9 . exon 333204 333953 . + . ID=Physo155853.2;Parent=Physo155853;constitutive=1;rank=2 scaffold_9 . CDS 333978 334626 . + 0 ID=Physo155853;Parent=Physo155853;rank=3 scaffold_9 . exon 333978 334626 . + . ID=Physo155853.3;Parent=Physo155853;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 334795 335556 . + 0 ID=Physo155853;Parent=Physo155853;rank=4 scaffold_9 . exon 334795 335556 . + . ID=Physo155853.4;Parent=Physo155853;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 335584 336281 . + 0 ID=Physo155853;Parent=Physo155853;rank=5 scaffold_9 . exon 335584 336281 . + . ID=Physo155853.5;Parent=Physo155853;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 336312 336905 . + 0 ID=Physo155853;Parent=Physo155853;rank=6 scaffold_9 . exon 336312 336905 . + . ID=Physo155853.6;Parent=Physo155853;constitutive=1;rank=6 scaffold_9 . CDS 336969 337914 . + 0 ID=Physo155853;Parent=Physo155853;rank=7 scaffold_9 . exon 336969 337914 . + . ID=Physo155853.7;Parent=Physo155853;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_9 . CDS 338143 338561 . + 0 ID=Physo155853;Parent=Physo155853;rank=8 scaffold_9 . biological_region 339176 339178 0.999 + . logic_name=eponine scaffold_9 . biological_region 339228 339232 0.999 - . logic_name=eponine scaffold_9 . biological_region 339262 339264 0.999 + . logic_name=eponine scaffold_9 . biological_region 339285 339288 0.999 + . logic_name=eponine scaffold_9 . biological_region 339329 339332 0.999 - . logic_name=eponine scaffold_9 . biological_region 339751 339752 0.999 + . logic_name=eponine scaffold_9 . biological_region 340547 340550 0.999 - . logic_name=eponine scaffold_9 . biological_region 341048 341052 0.999 + . logic_name=eponine scaffold_9 . biological_region 341344 341348 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 338732 339844 . - . ID=Physo108412;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90008;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 338732 339844 . - . ID=Physo108412;Parent=Physo108412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 338732 339844 . - 0 ID=Physo108412;Parent=Physo108412;rank=1 scaffold_9 . exon 338732 339844 . - . ID=Physo108412.1;Parent=Physo108412;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 341008 344753 . + . ID=Physo129804;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90081;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 341008 344753 . + . ID=Physo129804;Parent=Physo129804;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 341008 344399 . + 0 ID=Physo129804;Parent=Physo129804;rank=1 scaffold_9 . exon 341008 344399 . + . ID=Physo129804.1;Parent=Physo129804;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 344468 344753 . + 0 ID=Physo129804;Parent=Physo129804;rank=2 scaffold_9 . exon 344468 344753 . + . ID=Physo129804.2;Parent=Physo129804;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 344898 345900 . - . ID=Physo129805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90082;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 344898 345900 . - . ID=Physo129805;Parent=Physo129805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 344898 345413 . - 0 ID=Physo129805;Parent=Physo129805;rank=3 scaffold_9 . exon 344898 345413 . - . ID=Physo129805.3;Parent=Physo129805;constitutive=1;rank=3 scaffold_9 . CDS 345485 345594 . - 0 ID=Physo129805;Parent=Physo129805;rank=2 scaffold_9 . exon 345485 345594 . - . ID=Physo129805.2;Parent=Physo129805;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 345678 345900 . - 0 ID=Physo129805;Parent=Physo129805;rank=1 scaffold_9 . exon 345678 345900 . - . ID=Physo129805.1;Parent=Physo129805;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 346060 348019 . - . ID=Physo129806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90083;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 346060 348019 . - . ID=Physo129806;Parent=Physo129806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 346060 346919 . - 0 ID=Physo129806;Parent=Physo129806;rank=3 scaffold_9 . exon 346060 346919 . - . ID=Physo129806.3;Parent=Physo129806;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 347000 347408 . - 0 ID=Physo129806;Parent=Physo129806;rank=2 scaffold_9 . exon 347000 347408 . - . ID=Physo129806.2;Parent=Physo129806;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 347483 348019 . - 0 ID=Physo129806;Parent=Physo129806;rank=1 scaffold_9 . exon 338143 338561 . + . ID=Physo155853.8;Parent=Physo155853;constitutive=1;ensembl_phase=1;rank=8 scaffold_9 . exon 347483 348019 . - . ID=Physo129806.1;Parent=Physo129806;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 348163 349606 . + . ID=Physo129807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90084;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 348163 349606 . + . ID=Physo129807;Parent=Physo129807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 348163 348351 . + . ID=Physo129807.1;Parent=Physo129807;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 348208 348351 . + 0 ID=Physo129807;Parent=Physo129807;rank=1 scaffold_9 . CDS 348430 348532 . + 0 ID=Physo129807;Parent=Physo129807;rank=2 scaffold_9 . exon 348430 348532 . + . ID=Physo129807.2;Parent=Physo129807;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 348612 348693 . + 0 ID=Physo129807;Parent=Physo129807;rank=3 scaffold_9 . exon 348612 348693 . + . ID=Physo129807.3;Parent=Physo129807;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 348773 349015 . + 0 ID=Physo129807;Parent=Physo129807;rank=4 scaffold_9 . exon 348773 349015 . + . ID=Physo129807.4;Parent=Physo129807;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_9 . CDS 349092 349328 . + 0 ID=Physo129807;Parent=Physo129807;rank=5 scaffold_9 . exon 349092 349328 . + . ID=Physo129807.5;Parent=Physo129807;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_9 . CDS 349408 349606 . + 0 ID=Physo129807;Parent=Physo129807;rank=6 scaffold_9 . exon 349408 349606 . + . ID=Physo129807.6;Parent=Physo129807;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 ensembl protein_coding_gene 350939 352147 . - . ID=Physo129808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90085;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 350939 352147 . - . ID=Physo129808;Parent=Physo129808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 350939 352147 . - 0 ID=Physo129808;Parent=Physo129808;rank=1 scaffold_9 . exon 350939 352147 . - . ID=Physo129808.1;Parent=Physo129808;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 354980 356364 . + . ID=Physo129809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90086;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 354980 356364 . + . ID=Physo129809;Parent=Physo129809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 354980 356071 . + 0 ID=Physo129809;Parent=Physo129809;rank=1 scaffold_9 . exon 354980 356071 . + . ID=Physo129809.1;Parent=Physo129809;constitutive=1;rank=1 scaffold_9 . CDS 356311 356364 . + 0 ID=Physo129809;Parent=Physo129809;rank=2 scaffold_9 . exon 356311 356364 . + . ID=Physo129809.2;Parent=Physo129809;constitutive=1;rank=2 scaffold_9 . biological_region 361305 361310 0.999 + . logic_name=eponine scaffold_9 . biological_region 362297 362300 0.999 + . logic_name=eponine scaffold_9 . biological_region 364557 364559 0.999 + . logic_name=eponine scaffold_9 . repeat_region 364782 364801 . ? . description=trf scaffold_9 ensembl protein_coding_gene 358802 361480 . - . ID=Physo129810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90087;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 358802 361480 . - . ID=Physo129810;Parent=Physo129810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 358802 358956 . - 0 ID=Physo129810;Parent=Physo129810;rank=4 scaffold_9 . exon 358802 358956 . - . ID=Physo129810.4;Parent=Physo129810;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 359083 359940 . - 0 ID=Physo129810;Parent=Physo129810;rank=3 scaffold_9 . exon 359083 359940 . - . ID=Physo129810.3;Parent=Physo129810;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 359973 361153 . - 0 ID=Physo129810;Parent=Physo129810;rank=2 scaffold_9 . exon 359973 361153 . - . ID=Physo129810.2;Parent=Physo129810;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 361194 361480 . - 0 ID=Physo129810;Parent=Physo129810;rank=1 scaffold_9 . exon 361194 361480 . - . ID=Physo129810.1;Parent=Physo129810;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 362271 364727 . + . ID=Physo129811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90088;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 362271 364727 . + . ID=Physo129811;Parent=Physo129811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 362271 364727 . + 0 ID=Physo129811;Parent=Physo129811;rank=1 scaffold_9 . exon 362271 364727 . + . ID=Physo129811.1;Parent=Physo129811;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 376763 378676 . + . ID=Physo108413;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90009;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 376763 378676 . + . ID=Physo108413;Parent=Physo108413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 376763 377104 . + 0 ID=Physo108413;Parent=Physo108413;rank=1 scaffold_9 . exon 376763 377104 . + . ID=Physo108413.1;Parent=Physo108413;constitutive=1;rank=1 scaffold_9 . CDS 377171 377932 . + 0 ID=Physo108413;Parent=Physo108413;rank=2 scaffold_9 . CDS 378009 378098 . + 0 ID=Physo108413;Parent=Physo108413;rank=3 scaffold_9 . CDS 378186 378530 . + 0 ID=Physo108413;Parent=Physo108413;rank=4 scaffold_9 ensembl protein_coding_gene 367754 368101 . + . ID=Physo112231;biotype=protein_coding;external_name=estExt_Genewise1.C_90009;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 367754 368101 . + . ID=Physo112231;Parent=Physo112231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 367754 368101 . + . ID=Physo112231.1;Parent=Physo112231;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 367823 368101 . + 0 ID=Physo112231;Parent=Physo112231;rank=1 scaffold_9 ensembl protein_coding_gene 371598 373245 . - . ID=Physo129812;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90089;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 371598 373245 . - . ID=Physo129812;Parent=Physo129812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 371598 371750 . - 0 ID=Physo129812;Parent=Physo129812;rank=3 scaffold_9 . exon 371598 371750 . - . ID=Physo129812.3;Parent=Physo129812;constitutive=1;rank=3 scaffold_9 . CDS 371826 371987 . - 0 ID=Physo129812;Parent=Physo129812;rank=2 scaffold_9 . exon 371826 371987 . - . ID=Physo129812.2;Parent=Physo129812;constitutive=1;rank=2 scaffold_9 . CDS 372052 373245 . - 0 ID=Physo129812;Parent=Physo129812;rank=1 scaffold_9 . exon 372052 373245 . - . ID=Physo129812.1;Parent=Physo129812;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 373387 376364 . + . ID=Physo129813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90090;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 373387 376364 . + . ID=Physo129813;Parent=Physo129813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 373387 373491 . + 0 ID=Physo129813;Parent=Physo129813;rank=1 scaffold_9 . exon 373387 373491 . + . ID=Physo129813.1;Parent=Physo129813;constitutive=1;rank=1 scaffold_9 . CDS 373600 373735 . + 0 ID=Physo129813;Parent=Physo129813;rank=2 scaffold_9 . exon 373600 373735 . + . ID=Physo129813.2;Parent=Physo129813;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 373819 373898 . + 0 ID=Physo129813;Parent=Physo129813;rank=3 scaffold_9 . exon 373819 373898 . + . ID=Physo129813.3;Parent=Physo129813;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 373974 374303 . + 0 ID=Physo129813;Parent=Physo129813;rank=4 scaffold_9 . exon 373974 374303 . + . ID=Physo129813.4;Parent=Physo129813;constitutive=1;rank=4 scaffold_9 . CDS 374376 374435 . + 0 ID=Physo129813;Parent=Physo129813;rank=5 scaffold_9 . exon 374376 374435 . + . ID=Physo129813.5;Parent=Physo129813;constitutive=1;rank=5 scaffold_9 . CDS 374498 374689 . + 0 ID=Physo129813;Parent=Physo129813;rank=6 scaffold_9 . exon 374498 374689 . + . ID=Physo129813.6;Parent=Physo129813;constitutive=1;rank=6 scaffold_9 . CDS 374755 374871 . + 0 ID=Physo129813;Parent=Physo129813;rank=7 scaffold_9 . exon 374755 374871 . + . ID=Physo129813.7;Parent=Physo129813;constitutive=1;rank=7 scaffold_9 . CDS 374943 375018 . + 0 ID=Physo129813;Parent=Physo129813;rank=8 scaffold_9 . exon 374943 375018 . + . ID=Physo129813.8;Parent=Physo129813;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_9 . CDS 375083 375819 . + 0 ID=Physo129813;Parent=Physo129813;rank=9 scaffold_9 . exon 375083 375819 . + . ID=Physo129813.9;Parent=Physo129813;constitutive=1;ensembl_phase=1;rank=9 scaffold_9 . CDS 375892 375984 . + 0 ID=Physo129813;Parent=Physo129813;rank=10 scaffold_9 . exon 375892 375984 . + . ID=Physo129813.10;Parent=Physo129813;constitutive=1;rank=10 scaffold_9 . CDS 376059 376364 . + 0 ID=Physo129813;Parent=Physo129813;rank=11 scaffold_9 . exon 376059 376364 . + . ID=Physo129813.11;Parent=Physo129813;constitutive=1;rank=11 scaffold_9 . biological_region 381816 381821 0.999 - . logic_name=eponine scaffold_9 . biological_region 382321 382326 0.999 + . logic_name=eponine scaffold_9 . biological_region 382352 382356 0.999 - . logic_name=eponine scaffold_9 . exon 377171 377932 . + . ID=Physo108413.2;Parent=Physo108413;constitutive=1;rank=2 scaffold_9 . exon 378009 378098 . + . ID=Physo108413.3;Parent=Physo108413;constitutive=1;rank=3 scaffold_9 . exon 378186 378676 . + . ID=Physo108413.4;Parent=Physo108413;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_9 ensembl protein_coding_gene 381236 382124 . + . ID=Physo108414;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90010;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 381236 382124 . + . ID=Physo108414;Parent=Physo108414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 381236 382124 . + . ID=Physo108414.1;Parent=Physo108414;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 381258 382013 . + 0 ID=Physo108414;Parent=Physo108414;rank=1 scaffold_9 ensembl protein_coding_gene 382247 383954 . + . ID=Physo112240;biotype=protein_coding;external_name=estExt_Genewise1.C_90018;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 382247 383954 . + . ID=Physo112240;Parent=Physo112240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 382247 383954 . + . ID=Physo112240.1;Parent=Physo112240;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 382263 383954 . + 0 ID=Physo112240;Parent=Physo112240;rank=1 scaffold_9 ensembl protein_coding_gene 386044 387970 . - . ID=Physo129818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90095;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 386044 387970 . - . ID=Physo129818;Parent=Physo129818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 386044 386142 . - 0 ID=Physo129818;Parent=Physo129818;rank=3 scaffold_9 . exon 386044 386142 . - . ID=Physo129818.3;Parent=Physo129818;constitutive=1;rank=3 scaffold_9 . CDS 386222 386726 . - 0 ID=Physo129818;Parent=Physo129818;rank=2 scaffold_9 . exon 386222 386726 . - . ID=Physo129818.2;Parent=Physo129818;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 386988 387970 . - 0 ID=Physo129818;Parent=Physo129818;rank=1 scaffold_9 ensembl protein_coding_gene 379035 381105 . - . ID=Physo155856;biotype=protein_coding;external_name=C_scaffold_9000036;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 379035 381105 . - . ID=Physo155856;Parent=Physo155856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 379035 379065 . - 0 ID=Physo155856;Parent=Physo155856;rank=3 scaffold_9 . exon 379035 379065 . - . ID=Physo155856.3;Parent=Physo155856;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 379100 380857 . - 0 ID=Physo155856;Parent=Physo155856;rank=2 scaffold_9 . exon 379100 380857 . - . ID=Physo155856.2;Parent=Physo155856;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 380945 381105 . - 0 ID=Physo155856;Parent=Physo155856;rank=1 scaffold_9 . exon 380945 381105 . - . ID=Physo155856.1;Parent=Physo155856;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . repeat_region 390109 390134 . ? . description=trf scaffold_9 . repeat_region 390283 390328 . ? . description=trf scaffold_9 . repeat_region 390283 390340 . ? . description=dust scaffold_9 . repeat_region 391111 391123 . ? . description=dust scaffold_9 . exon 386988 387970 . - . ID=Physo129818.1;Parent=Physo129818;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 388361 388913 . + . ID=Physo129819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90096;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 388361 388913 . + . ID=Physo129819;Parent=Physo129819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 388361 388469 . + 0 ID=Physo129819;Parent=Physo129819;rank=1 scaffold_9 . exon 388361 388469 . + . ID=Physo129819.1;Parent=Physo129819;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 388576 388913 . + 0 ID=Physo129819;Parent=Physo129819;rank=2 scaffold_9 . exon 388576 388913 . + . ID=Physo129819.2;Parent=Physo129819;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 ensembl protein_coding_gene 389701 390963 . + . ID=Physo129820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90097;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 389701 390963 . + . ID=Physo129820;Parent=Physo129820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 389701 390963 . + 0 ID=Physo129820;Parent=Physo129820;rank=1 scaffold_9 . exon 389701 390963 . + . ID=Physo129820.1;Parent=Physo129820;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 395727 397277 . + . ID=Physo129821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90098;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 395727 397277 . + . ID=Physo129821;Parent=Physo129821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 395727 395790 . + 0 ID=Physo129821;Parent=Physo129821;rank=1 scaffold_9 . exon 395727 395790 . + . ID=Physo129821.1;Parent=Physo129821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 395862 395983 . + 0 ID=Physo129821;Parent=Physo129821;rank=2 scaffold_9 . exon 395862 395983 . + . ID=Physo129821.2;Parent=Physo129821;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 396060 397039 . + 0 ID=Physo129821;Parent=Physo129821;rank=3 scaffold_9 . exon 396060 397039 . + . ID=Physo129821.3;Parent=Physo129821;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 397100 397277 . + 0 ID=Physo129821;Parent=Physo129821;rank=4 scaffold_9 . biological_region 398460 398464 0.999 + . logic_name=eponine scaffold_9 . biological_region 400341 400345 0.999 + . logic_name=eponine scaffold_9 . biological_region 401062 401062 0.999 + . logic_name=eponine scaffold_9 . biological_region 404710 404712 0.999 - . logic_name=eponine scaffold_9 . biological_region 405944 405949 0.999 - . logic_name=eponine scaffold_9 . biological_region 406025 406027 0.999 - . logic_name=eponine scaffold_9 . biological_region 406059 406062 0.999 + . logic_name=eponine scaffold_9 . biological_region 406099 406105 0.999 - . logic_name=eponine scaffold_9 . exon 397100 397277 . + . ID=Physo129821.4;Parent=Physo129821;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 ensembl protein_coding_gene 399206 400517 . + . ID=Physo129823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90100;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 399206 400517 . + . ID=Physo129823;Parent=Physo129823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 399206 399544 . + 0 ID=Physo129823;Parent=Physo129823;rank=1 scaffold_9 . exon 399206 399544 . + . ID=Physo129823.1;Parent=Physo129823;constitutive=1;rank=1 scaffold_9 . CDS 399622 400232 . + 0 ID=Physo129823;Parent=Physo129823;rank=2 scaffold_9 . exon 399622 400232 . + . ID=Physo129823.2;Parent=Physo129823;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 400322 400517 . + 0 ID=Physo129823;Parent=Physo129823;rank=3 scaffold_9 . exon 400322 400517 . + . ID=Physo129823.3;Parent=Physo129823;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 ensembl protein_coding_gene 403693 406003 . - . ID=Physo129824;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90101;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 403693 406003 . - . ID=Physo129824;Parent=Physo129824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 403693 403775 . - 0 ID=Physo129824;Parent=Physo129824;rank=2 scaffold_9 . exon 403693 403775 . - . ID=Physo129824.2;Parent=Physo129824;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 403939 406003 . - 0 ID=Physo129824;Parent=Physo129824;rank=1 scaffold_9 . exon 403939 406003 . - . ID=Physo129824.1;Parent=Physo129824;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 406319 408227 . - . ID=Physo129825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90102;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 406319 408227 . - . ID=Physo129825;Parent=Physo129825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 406319 408227 . - . ID=Physo129825.1;Parent=Physo129825;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 406373 408007 . - 0 ID=Physo129825;Parent=Physo129825;rank=1 scaffold_9 ensembl protein_coding_gene 397364 398671 . - . ID=Physo155863;biotype=protein_coding;external_name=C_scaffold_9000043;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 397364 398671 . - . ID=Physo155863;Parent=Physo155863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 397364 397689 . - 0 ID=Physo155863;Parent=Physo155863;rank=2 scaffold_9 . exon 397364 397689 . - . ID=Physo155863.2;Parent=Physo155863;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 397801 398671 . - 0 ID=Physo155863;Parent=Physo155863;rank=1 scaffold_9 . exon 397801 398671 . - . ID=Physo155863.1;Parent=Physo155863;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . repeat_region 408522 408567 . ? . description=dust scaffold_9 ensembl protein_coding_gene 408675 412537 . + . ID=Physo155865;biotype=protein_coding;external_name=C_scaffold_9000045;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 408675 412537 . + . ID=Physo155865;Parent=Physo155865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 408675 409379 . + 0 ID=Physo155865;Parent=Physo155865;rank=1 scaffold_9 . exon 408675 409379 . + . ID=Physo155865.1;Parent=Physo155865;constitutive=1;rank=1 scaffold_9 . CDS 409422 409655 . + 0 ID=Physo155865;Parent=Physo155865;rank=2 scaffold_9 . exon 409422 409655 . + . ID=Physo155865.2;Parent=Physo155865;constitutive=1;rank=2 scaffold_9 . CDS 409716 409719 . + 0 ID=Physo155865;Parent=Physo155865;rank=3 scaffold_9 . exon 409716 409719 . + . ID=Physo155865.3;Parent=Physo155865;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 409890 410135 . + 0 ID=Physo155865;Parent=Physo155865;rank=4 scaffold_9 . exon 409890 410135 . + . ID=Physo155865.4;Parent=Physo155865;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 410157 411583 . + 0 ID=Physo155865;Parent=Physo155865;rank=5 scaffold_9 . exon 410157 411583 . + . ID=Physo155865.5;Parent=Physo155865;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 411650 411952 . + 0 ID=Physo155865;Parent=Physo155865;rank=6 scaffold_9 . exon 411650 411952 . + . ID=Physo155865.6;Parent=Physo155865;constitutive=1;rank=6 scaffold_9 . CDS 412004 412537 . + 0 ID=Physo155865;Parent=Physo155865;rank=7 scaffold_9 . exon 412004 412537 . + . ID=Physo155865.7;Parent=Physo155865;constitutive=1;rank=7 scaffold_9 . biological_region 418294 418294 0.999 - . logic_name=eponine scaffold_9 . biological_region 421172 421173 0.999 + . logic_name=eponine scaffold_9 . biological_region 423901 423904 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 416496 417426 . - . ID=Physo108416;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90012;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 416496 417426 . - . ID=Physo108416;Parent=Physo108416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 416496 416903 . - 0 ID=Physo108416;Parent=Physo108416;rank=3 scaffold_9 . exon 416496 416903 . - . ID=Physo108416.3;Parent=Physo108416;constitutive=1;rank=3 scaffold_9 . CDS 416970 417257 . - 0 ID=Physo108416;Parent=Physo108416;rank=2 scaffold_9 . exon 416970 417257 . - . ID=Physo108416.2;Parent=Physo108416;constitutive=1;rank=2 scaffold_9 . CDS 417328 417426 . - 0 ID=Physo108416;Parent=Physo108416;rank=1 scaffold_9 . exon 417328 417426 . - . ID=Physo108416.1;Parent=Physo108416;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 425806 426696 . - . ID=Physo112261;biotype=protein_coding;external_name=estExt_Genewise1.C_90039;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 425806 426696 . - . ID=Physo112261;Parent=Physo112261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 425806 426696 . - 0 ID=Physo112261;Parent=Physo112261;rank=1 scaffold_9 . exon 425806 426696 . - . ID=Physo112261.1;Parent=Physo112261;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 417864 418555 . - . ID=Physo129828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90105;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 417864 418555 . - . ID=Physo129828;Parent=Physo129828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 417864 417866 . - 0 ID=Physo129828;Parent=Physo129828;rank=3 scaffold_9 . exon 417864 417866 . - . ID=Physo129828.3;Parent=Physo129828;constitutive=1;rank=3 scaffold_9 . CDS 417931 418369 . - 0 ID=Physo129828;Parent=Physo129828;rank=2 scaffold_9 . exon 417931 418369 . - . ID=Physo129828.2;Parent=Physo129828;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 418443 418555 . - 0 ID=Physo129828;Parent=Physo129828;rank=1 scaffold_9 . exon 418443 418555 . - . ID=Physo129828.1;Parent=Physo129828;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 419386 421651 . - . ID=Physo129829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90106;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 419386 421651 . - . ID=Physo129829;Parent=Physo129829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 419386 420003 . - 0 ID=Physo129829;Parent=Physo129829;rank=4 scaffold_9 . exon 419386 420003 . - . ID=Physo129829.4;Parent=Physo129829;constitutive=1;rank=4 scaffold_9 . CDS 420193 420300 . - 0 ID=Physo129829;Parent=Physo129829;rank=3 scaffold_9 . exon 420193 420300 . - . ID=Physo129829.3;Parent=Physo129829;constitutive=1;rank=3 scaffold_9 . CDS 420370 420518 . - 0 ID=Physo129829;Parent=Physo129829;rank=2 scaffold_9 . exon 420370 420518 . - . ID=Physo129829.2;Parent=Physo129829;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 420586 421636 . - 0 ID=Physo129829;Parent=Physo129829;rank=1 scaffold_9 . exon 420586 421651 . - . ID=Physo129829.1;Parent=Physo129829;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 421867 424366 . - . ID=Physo129830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90107;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 421867 424366 . - . ID=Physo129830;Parent=Physo129830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 421867 422651 . - . ID=Physo129830.5;Parent=Physo129830;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_9 . CDS 421944 422651 . - 0 ID=Physo129830;Parent=Physo129830;rank=5 scaffold_9 . CDS 422742 422807 . - 0 ID=Physo129830;Parent=Physo129830;rank=4 scaffold_9 . exon 422742 422807 . - . ID=Physo129830.4;Parent=Physo129830;constitutive=1;rank=4 scaffold_9 . CDS 422849 422890 . - 0 ID=Physo129830;Parent=Physo129830;rank=3 scaffold_9 . exon 422849 422890 . - . ID=Physo129830.3;Parent=Physo129830;constitutive=1;rank=3 scaffold_9 . CDS 423086 423234 . - 0 ID=Physo129830;Parent=Physo129830;rank=2 scaffold_9 . exon 423086 423234 . - . ID=Physo129830.2;Parent=Physo129830;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 423316 424366 . - 0 ID=Physo129830;Parent=Physo129830;rank=1 scaffold_9 . exon 423316 424366 . - . ID=Physo129830.1;Parent=Physo129830;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . repeat_region 429570 429589 . ? . description=dust scaffold_9 . repeat_region 429570 429589 . ? . description=trf scaffold_9 . repeat_region 429878 429891 . ? . description=dust scaffold_9 ensembl protein_coding_gene 429922 430455 . + . ID=Physo129832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90109;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 429922 430455 . + . ID=Physo129832;Parent=Physo129832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 429922 430143 . + 0 ID=Physo129832;Parent=Physo129832;rank=1 scaffold_9 . exon 429922 430143 . + . ID=Physo129832.1;Parent=Physo129832;constitutive=1;rank=1 scaffold_9 . CDS 430252 430356 . + 0 ID=Physo129832;Parent=Physo129832;rank=2 scaffold_9 . exon 430252 430356 . + . ID=Physo129832.2;Parent=Physo129832;constitutive=1;rank=2 scaffold_9 . CDS 430432 430455 . + 0 ID=Physo129832;Parent=Physo129832;rank=3 scaffold_9 . exon 430432 430455 . + . ID=Physo129832.3;Parent=Physo129832;constitutive=1;rank=3 scaffold_9 ensembl protein_coding_gene 430652 433447 . - . ID=Physo129833;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90110;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 430652 433447 . - . ID=Physo129833;Parent=Physo129833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 430652 433447 . - 0 ID=Physo129833;Parent=Physo129833;rank=1 scaffold_9 . exon 430652 433447 . - . ID=Physo129833.1;Parent=Physo129833;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 433713 434981 . + . ID=Physo129834;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90111;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 433713 434981 . + . ID=Physo129834;Parent=Physo129834;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 433713 433883 . + 0 ID=Physo129834;Parent=Physo129834;rank=1 scaffold_9 . exon 433713 433883 . + . ID=Physo129834.1;Parent=Physo129834;constitutive=1;rank=1 scaffold_9 . CDS 433945 434370 . + 0 ID=Physo129834;Parent=Physo129834;rank=2 scaffold_9 . exon 433945 434370 . + . ID=Physo129834.2;Parent=Physo129834;constitutive=1;rank=2 scaffold_9 . CDS 434443 434495 . + 0 ID=Physo129834;Parent=Physo129834;rank=3 scaffold_9 . exon 434443 434495 . + . ID=Physo129834.3;Parent=Physo129834;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 434569 434655 . + 0 ID=Physo129834;Parent=Physo129834;rank=4 scaffold_9 . exon 434569 434655 . + . ID=Physo129834.4;Parent=Physo129834;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_9 . CDS 434759 434981 . + 0 ID=Physo129834;Parent=Physo129834;rank=5 scaffold_9 . exon 434759 434981 . + . ID=Physo129834.5;Parent=Physo129834;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 ensembl protein_coding_gene 435362 435951 . - . ID=Physo155870;biotype=protein_coding;external_name=C_scaffold_9000050;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 435362 435951 . - . ID=Physo155870;Parent=Physo155870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 435362 435392 . - 0 ID=Physo155870;Parent=Physo155870;rank=4 scaffold_9 . exon 435362 435392 . - . ID=Physo155870.4;Parent=Physo155870;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 435445 435575 . - 0 ID=Physo155870;Parent=Physo155870;rank=3 scaffold_9 . exon 435445 435575 . - . ID=Physo155870.3;Parent=Physo155870;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 435600 435819 . - 0 ID=Physo155870;Parent=Physo155870;rank=2 scaffold_9 . exon 435600 435819 . - . ID=Physo155870.2;Parent=Physo155870;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 435890 435951 . - 0 ID=Physo155870;Parent=Physo155870;rank=1 scaffold_9 . exon 435890 435951 . - . ID=Physo155870.1;Parent=Physo155870;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . biological_region 439219 439223 0.999 - . logic_name=eponine scaffold_9 . biological_region 439588 439593 0.999 + . logic_name=eponine scaffold_9 . biological_region 445760 445761 0.999 + . logic_name=eponine scaffold_9 . biological_region 445769 445770 0.999 + . logic_name=eponine scaffold_9 . biological_region 445804 445808 0.999 - . logic_name=eponine scaffold_9 . biological_region 445825 445832 0.999 - . logic_name=eponine scaffold_9 . biological_region 445835 445840 0.999 - . logic_name=eponine scaffold_9 . biological_region 445879 445883 0.999 + . logic_name=eponine scaffold_9 . biological_region 445936 445941 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 439140 441512 . + . ID=Physo108417;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90013;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 439140 441512 . + . ID=Physo108417;Parent=Physo108417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 439140 440429 . + 0 ID=Physo108417;Parent=Physo108417;rank=1 scaffold_9 . exon 439140 440429 . + . ID=Physo108417.1;Parent=Physo108417;constitutive=1;rank=1 scaffold_9 . CDS 440517 441512 . + 0 ID=Physo108417;Parent=Physo108417;rank=2 scaffold_9 . exon 440517 441512 . + . ID=Physo108417.2;Parent=Physo108417;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 436629 437429 . + . ID=Physo129835;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90112;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 436629 437429 . + . ID=Physo129835;Parent=Physo129835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 436629 436821 . + . ID=Physo129835.1;Parent=Physo129835;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 436651 436821 . + 0 ID=Physo129835;Parent=Physo129835;rank=1 scaffold_9 . CDS 436899 437047 . + 0 ID=Physo129835;Parent=Physo129835;rank=2 scaffold_9 . exon 436899 437047 . + . ID=Physo129835.2;Parent=Physo129835;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 437121 437304 . + 0 ID=Physo129835;Parent=Physo129835;rank=3 scaffold_9 . exon 437121 437429 . + . ID=Physo129835.3;Parent=Physo129835;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_9 ensembl protein_coding_gene 441636 446001 . - . ID=Physo129837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90114;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 441636 446001 . - . ID=Physo129837;Parent=Physo129837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 441636 444462 . - 0 ID=Physo129837;Parent=Physo129837;rank=4 scaffold_9 . exon 441636 444462 . - . ID=Physo129837.4;Parent=Physo129837;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 444764 444874 . - 0 ID=Physo129837;Parent=Physo129837;rank=3 scaffold_9 . exon 444764 444874 . - . ID=Physo129837.3;Parent=Physo129837;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . CDS 444949 445253 . - 0 ID=Physo129837;Parent=Physo129837;rank=2 scaffold_9 . exon 444949 445253 . - . ID=Physo129837.2;Parent=Physo129837;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 445345 446001 . - 0 ID=Physo129837;Parent=Physo129837;rank=1 scaffold_9 . exon 445345 446001 . - . ID=Physo129837.1;Parent=Physo129837;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 437513 438374 . - . ID=Physo155872;biotype=protein_coding;external_name=C_scaffold_9000052;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 437513 438374 . - . ID=Physo155872;Parent=Physo155872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 437513 437556 . - 0 ID=Physo155872;Parent=Physo155872;rank=6 scaffold_9 . exon 437513 437556 . - . ID=Physo155872.6;Parent=Physo155872;constitutive=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 437621 437720 . - 0 ID=Physo155872;Parent=Physo155872;rank=5 scaffold_9 . exon 437621 437720 . - . ID=Physo155872.5;Parent=Physo155872;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_9 . CDS 437866 437892 . - 0 ID=Physo155872;Parent=Physo155872;rank=4 scaffold_9 . exon 437866 437892 . - . ID=Physo155872.4;Parent=Physo155872;constitutive=1;rank=4 scaffold_9 . CDS 437983 438054 . - 0 ID=Physo155872;Parent=Physo155872;rank=3 scaffold_9 . exon 437983 438054 . - . ID=Physo155872.3;Parent=Physo155872;constitutive=1;rank=3 scaffold_9 . CDS 438141 438190 . - 0 ID=Physo155872;Parent=Physo155872;rank=2 scaffold_9 . exon 438141 438190 . - . ID=Physo155872.2;Parent=Physo155872;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 438278 438374 . - 0 ID=Physo155872;Parent=Physo155872;rank=1 scaffold_9 . exon 438278 438374 . - . ID=Physo155872.1;Parent=Physo155872;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . repeat_region 447316 447340 . ? . description=trf scaffold_9 ensembl protein_coding_gene 447499 449539 . - . ID=Physo129839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90116;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 447499 449539 . - . ID=Physo129839;Parent=Physo129839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 447499 449539 . - . ID=Physo129839.1;Parent=Physo129839;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 447660 449498 . - 0 ID=Physo129839;Parent=Physo129839;rank=1 scaffold_9 ensembl protein_coding_gene 449741 451048 . + . ID=Physo129840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90117;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 449741 451048 . + . ID=Physo129840;Parent=Physo129840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 449741 449772 . + 0 ID=Physo129840;Parent=Physo129840;rank=1 scaffold_9 . exon 449741 449772 . + . ID=Physo129840.1;Parent=Physo129840;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 449846 449958 . + 0 ID=Physo129840;Parent=Physo129840;rank=2 scaffold_9 . exon 449846 449958 . + . ID=Physo129840.2;Parent=Physo129840;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 450415 450541 . + 0 ID=Physo129840;Parent=Physo129840;rank=3 scaffold_9 . exon 450415 450541 . + . ID=Physo129840.3;Parent=Physo129840;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 450614 450661 . + 0 ID=Physo129840;Parent=Physo129840;rank=4 scaffold_9 . exon 450614 450661 . + . ID=Physo129840.4;Parent=Physo129840;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_9 . CDS 450745 451048 . + 0 ID=Physo129840;Parent=Physo129840;rank=5 scaffold_9 . exon 450745 451048 . + . ID=Physo129840.5;Parent=Physo129840;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 ensembl protein_coding_gene 452858 454018 . + . ID=Physo129841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90118;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 452858 454018 . + . ID=Physo129841;Parent=Physo129841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 452858 454018 . + 0 ID=Physo129841;Parent=Physo129841;rank=1 scaffold_9 . exon 452858 454018 . + . ID=Physo129841.1;Parent=Physo129841;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 454436 457730 . - . ID=Physo129842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90119;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 454436 457730 . - . ID=Physo129842;Parent=Physo129842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 454436 455545 . - 0 ID=Physo129842;Parent=Physo129842;rank=8 scaffold_9 . exon 454436 455545 . - . ID=Physo129842.8;Parent=Physo129842;constitutive=1;rank=8 scaffold_9 . CDS 455618 456612 . - 0 ID=Physo129842;Parent=Physo129842;rank=7 scaffold_9 . exon 455618 456612 . - . ID=Physo129842.7;Parent=Physo129842;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 456882 456909 . - 0 ID=Physo129842;Parent=Physo129842;rank=6 scaffold_9 . CDS 457057 457110 . - 0 ID=Physo129842;Parent=Physo129842;rank=5 scaffold_9 . CDS 457200 457278 . - 0 ID=Physo129842;Parent=Physo129842;rank=4 scaffold_9 . CDS 457354 457442 . - 0 ID=Physo129842;Parent=Physo129842;rank=3 scaffold_9 . CDS 457527 457647 . - 0 ID=Physo129842;Parent=Physo129842;rank=2 scaffold_9 . CDS 457717 457730 . - 0 ID=Physo129842;Parent=Physo129842;rank=1 scaffold_9 ensembl protein_coding_gene 446302 447446 . + . ID=Physo155876;biotype=protein_coding;external_name=C_scaffold_9000056;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 446302 447446 . + . ID=Physo155876;Parent=Physo155876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 446302 446343 . + 0 ID=Physo155876;Parent=Physo155876;rank=1 scaffold_9 . exon 446302 446343 . + . ID=Physo155876.1;Parent=Physo155876;constitutive=1;rank=1 scaffold_9 . CDS 446484 447446 . + 0 ID=Physo155876;Parent=Physo155876;rank=2 scaffold_9 . exon 446484 447446 . + . ID=Physo155876.2;Parent=Physo155876;constitutive=1;rank=2 scaffold_9 . repeat_region 457126 457147 . ? . description=dust scaffold_9 . biological_region 457603 457603 0.999 - . logic_name=eponine scaffold_9 . repeat_region 458525 458556 . ? . description=dust scaffold_9 . biological_region 462752 462752 0.999 - . logic_name=eponine scaffold_9 . biological_region 463945 463950 0.999 + . logic_name=eponine scaffold_9 . biological_region 463979 463981 0.999 - . logic_name=eponine scaffold_9 . biological_region 463996 464001 0.999 - . logic_name=eponine scaffold_9 . biological_region 464053 464055 0.999 + . logic_name=eponine scaffold_9 . biological_region 464208 464210 0.999 - . logic_name=eponine scaffold_9 . biological_region 464263 464265 0.999 + . logic_name=eponine scaffold_9 . repeat_region 464728 464744 . ? . description=dust scaffold_9 . exon 456882 456909 . - . ID=Physo129842.6;Parent=Physo129842;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_9 . exon 457057 457110 . - . ID=Physo129842.5;Parent=Physo129842;constitutive=1;rank=5 scaffold_9 . exon 457200 457278 . - . ID=Physo129842.4;Parent=Physo129842;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . exon 457354 457442 . - . ID=Physo129842.3;Parent=Physo129842;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . exon 457527 457647 . - . ID=Physo129842.2;Parent=Physo129842;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . exon 457717 457730 . - . ID=Physo129842.1;Parent=Physo129842;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 457838 460543 . + . ID=Physo129843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90120;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 457838 460543 . + . ID=Physo129843;Parent=Physo129843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 457838 458872 . + 0 ID=Physo129843;Parent=Physo129843;rank=1 scaffold_9 . exon 457838 458872 . + . ID=Physo129843.1;Parent=Physo129843;constitutive=1;rank=1 scaffold_9 . CDS 458909 459038 . + 0 ID=Physo129843;Parent=Physo129843;rank=2 scaffold_9 . exon 458909 459038 . + . ID=Physo129843.2;Parent=Physo129843;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 459425 459439 . + 0 ID=Physo129843;Parent=Physo129843;rank=3 scaffold_9 . exon 459425 459439 . + . ID=Physo129843.3;Parent=Physo129843;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 459705 460543 . + 0 ID=Physo129843;Parent=Physo129843;rank=4 scaffold_9 . exon 459705 460543 . + . ID=Physo129843.4;Parent=Physo129843;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 460703 461145 . + . ID=Physo129844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90121;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 460703 461145 . + . ID=Physo129844;Parent=Physo129844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 460703 460868 . + 0 ID=Physo129844;Parent=Physo129844;rank=1 scaffold_9 . exon 460703 460868 . + . ID=Physo129844.1;Parent=Physo129844;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 460934 461145 . + 0 ID=Physo129844;Parent=Physo129844;rank=2 scaffold_9 . exon 460934 461145 . + . ID=Physo129844.2;Parent=Physo129844;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 ensembl protein_coding_gene 461383 463640 . - . ID=Physo129845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90122;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 461383 463640 . - . ID=Physo129845;Parent=Physo129845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 461383 461505 . - 0 ID=Physo129845;Parent=Physo129845;rank=6 scaffold_9 . exon 461383 461505 . - . ID=Physo129845.6;Parent=Physo129845;constitutive=1;rank=6 scaffold_9 . CDS 461585 461765 . - 0 ID=Physo129845;Parent=Physo129845;rank=5 scaffold_9 . exon 461585 461765 . - . ID=Physo129845.5;Parent=Physo129845;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 461846 461925 . - 0 ID=Physo129845;Parent=Physo129845;rank=4 scaffold_9 . exon 461846 461925 . - . ID=Physo129845.4;Parent=Physo129845;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 462018 462404 . - 0 ID=Physo129845;Parent=Physo129845;rank=3 scaffold_9 . exon 462018 462404 . - . ID=Physo129845.3;Parent=Physo129845;constitutive=1;rank=3 scaffold_9 . CDS 462479 462634 . - 0 ID=Physo129845;Parent=Physo129845;rank=2 scaffold_9 . exon 462479 462634 . - . ID=Physo129845.2;Parent=Physo129845;constitutive=1;rank=2 scaffold_9 . CDS 462705 463640 . - 0 ID=Physo129845;Parent=Physo129845;rank=1 scaffold_9 . exon 462705 463640 . - . ID=Physo129845.1;Parent=Physo129845;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 463842 464934 . + . ID=Physo155879;biotype=protein_coding;external_name=C_scaffold_9000059;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 463842 464934 . + . ID=Physo155879;Parent=Physo155879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 463842 464555 . + 0 ID=Physo155879;Parent=Physo155879;rank=1 scaffold_9 . exon 463842 464555 . + . ID=Physo155879.1;Parent=Physo155879;constitutive=1;rank=1 scaffold_9 . CDS 464627 464704 . + 0 ID=Physo155879;Parent=Physo155879;rank=2 scaffold_9 . exon 464627 464704 . + . ID=Physo155879.2;Parent=Physo155879;constitutive=1;rank=2 scaffold_9 . CDS 464779 464934 . + 0 ID=Physo155879;Parent=Physo155879;rank=3 scaffold_9 . exon 464779 464934 . + . ID=Physo155879.3;Parent=Physo155879;constitutive=1;rank=3 scaffold_9 . repeat_region 472641 472661 . ? . description=trf scaffold_9 . repeat_region 474393 474438 . ? . description=trf scaffold_9 . repeat_region 475794 475830 . ? . description=trf scaffold_9 ensembl protein_coding_gene 469854 470947 . - . ID=Physo129847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90124;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 469854 470947 . - . ID=Physo129847;Parent=Physo129847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 469854 469883 . - 0 ID=Physo129847;Parent=Physo129847;rank=5 scaffold_9 . exon 469854 469883 . - . ID=Physo129847.5;Parent=Physo129847;constitutive=1;rank=5 scaffold_9 . CDS 469967 470050 . - 0 ID=Physo129847;Parent=Physo129847;rank=4 scaffold_9 . exon 469967 470050 . - . ID=Physo129847.4;Parent=Physo129847;constitutive=1;rank=4 scaffold_9 . CDS 470220 470259 . - 0 ID=Physo129847;Parent=Physo129847;rank=3 scaffold_9 . exon 470220 470259 . - . ID=Physo129847.3;Parent=Physo129847;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 470333 470513 . - 0 ID=Physo129847;Parent=Physo129847;rank=2 scaffold_9 . exon 470333 470513 . - . ID=Physo129847.2;Parent=Physo129847;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 470620 470947 . - 0 ID=Physo129847;Parent=Physo129847;rank=1 scaffold_9 . exon 470620 470947 . - . ID=Physo129847.1;Parent=Physo129847;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 471215 472703 . + . ID=Physo129848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90125;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 471215 472703 . + . ID=Physo129848;Parent=Physo129848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 471215 471456 . + 0 ID=Physo129848;Parent=Physo129848;rank=1 scaffold_9 . exon 471215 471456 . + . ID=Physo129848.1;Parent=Physo129848;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 471523 471578 . + 0 ID=Physo129848;Parent=Physo129848;rank=2 scaffold_9 . exon 471523 471578 . + . ID=Physo129848.2;Parent=Physo129848;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 471668 472218 . + 0 ID=Physo129848;Parent=Physo129848;rank=3 scaffold_9 . exon 471668 472218 . + . ID=Physo129848.3;Parent=Physo129848;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 472285 472340 . + 0 ID=Physo129848;Parent=Physo129848;rank=4 scaffold_9 . exon 472285 472340 . + . ID=Physo129848.4;Parent=Physo129848;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 472410 472560 . + 0 ID=Physo129848;Parent=Physo129848;rank=5 scaffold_9 . exon 472410 472703 . + . ID=Physo129848.5;Parent=Physo129848;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_9 ensembl protein_coding_gene 472886 474451 . + . ID=Physo129849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90126;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 472886 474451 . + . ID=Physo129849;Parent=Physo129849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 472886 474451 . + 0 ID=Physo129849;Parent=Physo129849;rank=1 scaffold_9 . exon 472886 474451 . + . ID=Physo129849.1;Parent=Physo129849;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 474676 477928 . - . ID=Physo129850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90127;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 474676 477928 . - . ID=Physo129850;Parent=Physo129850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 474676 474792 . - 0 ID=Physo129850;Parent=Physo129850;rank=6 scaffold_9 . exon 474676 474792 . - . ID=Physo129850.6;Parent=Physo129850;constitutive=1;rank=6 scaffold_9 . CDS 474864 475085 . - 0 ID=Physo129850;Parent=Physo129850;rank=5 scaffold_9 . exon 474864 475085 . - . ID=Physo129850.5;Parent=Physo129850;constitutive=1;rank=5 scaffold_9 . CDS 475162 475386 . - 0 ID=Physo129850;Parent=Physo129850;rank=4 scaffold_9 . exon 475162 475386 . - . ID=Physo129850.4;Parent=Physo129850;constitutive=1;rank=4 scaffold_9 . CDS 475461 476258 . - 0 ID=Physo129850;Parent=Physo129850;rank=3 scaffold_9 . exon 475461 476258 . - . ID=Physo129850.3;Parent=Physo129850;constitutive=1;rank=3 scaffold_9 . CDS 476504 477033 . - 0 ID=Physo129850;Parent=Physo129850;rank=2 scaffold_9 . CDS 477112 477928 . - 0 ID=Physo129850;Parent=Physo129850;rank=1 scaffold_9 . biological_region 478256 478258 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 480847 485176 . - . ID=Physo112280;biotype=protein_coding;external_name=estExt_Genewise1.C_90058;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 480847 485176 . - . ID=Physo112280;Parent=Physo112280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 480847 481030 . - 0 ID=Physo112280;Parent=Physo112280;rank=4 scaffold_9 . exon 480847 481030 . - . ID=Physo112280.4;Parent=Physo112280;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 481091 481714 . - 0 ID=Physo112280;Parent=Physo112280;rank=3 scaffold_9 . exon 481091 481714 . - . ID=Physo112280.3;Parent=Physo112280;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . CDS 481797 482245 . - 0 ID=Physo112280;Parent=Physo112280;rank=2 scaffold_9 . exon 481797 482245 . - . ID=Physo112280.2;Parent=Physo112280;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 482633 485155 . - 0 ID=Physo112280;Parent=Physo112280;rank=1 scaffold_9 . exon 482633 485176 . - . ID=Physo112280.1;Parent=Physo112280;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . exon 476504 477033 . - . ID=Physo129850.2;Parent=Physo129850;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . exon 477112 477928 . - . ID=Physo129850.1;Parent=Physo129850;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 479449 480716 . + . ID=Physo129851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90128;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 479449 480716 . + . ID=Physo129851;Parent=Physo129851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 479449 480353 . + . ID=Physo129851.1;Parent=Physo129851;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 479505 480353 . + 0 ID=Physo129851;Parent=Physo129851;rank=1 scaffold_9 . CDS 480424 480624 . + 0 ID=Physo129851;Parent=Physo129851;rank=2 scaffold_9 . exon 480424 480716 . + . ID=Physo129851.2;Parent=Physo129851;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_9 . repeat_region 494059 494066 . ? . description=dust scaffold_9 ensembl protein_coding_gene 489894 492035 . + . ID=Physo108418;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90014;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 489894 492035 . + . ID=Physo108418;Parent=Physo108418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 489894 492035 . + 0 ID=Physo108418;Parent=Physo108418;rank=1 scaffold_9 . exon 489894 492035 . + . ID=Physo108418.1;Parent=Physo108418;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 494818 499442 . + . ID=Physo108419;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90015;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 494818 499442 . + . ID=Physo108419;Parent=Physo108419;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 494818 497246 . + 0 ID=Physo108419;Parent=Physo108419;rank=1 scaffold_9 . exon 494818 497246 . + . ID=Physo108419.1;Parent=Physo108419;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 497385 497512 . + 0 ID=Physo108419;Parent=Physo108419;rank=2 scaffold_9 . CDS 497552 497704 . + 0 ID=Physo108419;Parent=Physo108419;rank=3 scaffold_9 . CDS 499414 499442 . + 0 ID=Physo108419;Parent=Physo108419;rank=4 scaffold_9 ensembl protein_coding_gene 492330 494168 . - . ID=Physo112288;biotype=protein_coding;external_name=estExt_Genewise1.C_90066;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 492330 494168 . - . ID=Physo112288;Parent=Physo112288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 492330 492386 . - 0 ID=Physo112288;Parent=Physo112288;rank=12 scaffold_9 . exon 492330 492386 . - . ID=Physo112288.12;Parent=Physo112288;constitutive=1;rank=12 scaffold_9 . CDS 492454 492603 . - 0 ID=Physo112288;Parent=Physo112288;rank=11 scaffold_9 . exon 492454 492603 . - . ID=Physo112288.11;Parent=Physo112288;constitutive=1;rank=11 scaffold_9 . CDS 492675 492785 . - 0 ID=Physo112288;Parent=Physo112288;rank=10 scaffold_9 . exon 492675 492785 . - . ID=Physo112288.10;Parent=Physo112288;constitutive=1;rank=10 scaffold_9 . CDS 492858 493020 . - 0 ID=Physo112288;Parent=Physo112288;rank=9 scaffold_9 . exon 492858 493020 . - . ID=Physo112288.9;Parent=Physo112288;constitutive=1;ensembl_phase=2;rank=9 scaffold_9 . CDS 493089 493162 . - 0 ID=Physo112288;Parent=Physo112288;rank=8 scaffold_9 . exon 493089 493162 . - . ID=Physo112288.8;Parent=Physo112288;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_9 . CDS 493224 493298 . - 0 ID=Physo112288;Parent=Physo112288;rank=7 scaffold_9 . exon 493224 493298 . - . ID=Physo112288.7;Parent=Physo112288;constitutive=1;rank=7 scaffold_9 . CDS 493371 493424 . - 0 ID=Physo112288;Parent=Physo112288;rank=6 scaffold_9 . exon 493371 493424 . - . ID=Physo112288.6;Parent=Physo112288;constitutive=1;rank=6 scaffold_9 . CDS 493503 493577 . - 0 ID=Physo112288;Parent=Physo112288;rank=5 scaffold_9 . exon 493503 493577 . - . ID=Physo112288.5;Parent=Physo112288;constitutive=1;rank=5 scaffold_9 . CDS 493665 493712 . - 0 ID=Physo112288;Parent=Physo112288;rank=4 scaffold_9 . exon 493665 493712 . - . ID=Physo112288.4;Parent=Physo112288;constitutive=1;rank=4 scaffold_9 . CDS 493785 493869 . - 0 ID=Physo112288;Parent=Physo112288;rank=3 scaffold_9 . exon 493785 493869 . - . ID=Physo112288.3;Parent=Physo112288;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 493946 494047 . - 0 ID=Physo112288;Parent=Physo112288;rank=2 scaffold_9 . exon 493946 494047 . - . ID=Physo112288.2;Parent=Physo112288;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 494122 494165 . - 0 ID=Physo112288;Parent=Physo112288;rank=1 scaffold_9 . exon 494122 494168 . - . ID=Physo112288.1;Parent=Physo112288;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 486449 489010 . - . ID=Physo129854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90131;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 486449 489010 . - . ID=Physo129854;Parent=Physo129854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 486449 489010 . - 0 ID=Physo129854;Parent=Physo129854;rank=1 scaffold_9 . exon 486449 489010 . - . ID=Physo129854.1;Parent=Physo129854;constitutive=1;rank=1 scaffold_9 . repeat_region 500580 500615 . ? . description=trf scaffold_9 . exon 497385 497512 . + . ID=Physo108419.2;Parent=Physo108419;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . exon 497552 497704 . + . ID=Physo108419.3;Parent=Physo108419;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . exon 499414 499442 . + . ID=Physo108419.4;Parent=Physo108419;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 499551 501038 . - . ID=Physo129857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90134;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 499551 501038 . - . ID=Physo129857;Parent=Physo129857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 499551 501038 . - 0 ID=Physo129857;Parent=Physo129857;rank=1 scaffold_9 . exon 499551 501038 . - . ID=Physo129857.1;Parent=Physo129857;constitutive=1;rank=1 scaffold_9 . repeat_region 513895 513902 . ? . description=dust scaffold_9 ensembl protein_coding_gene 509800 510945 . - . ID=Physo112301;biotype=protein_coding;external_name=estExt_Genewise1.C_90079;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 509800 510945 . - . ID=Physo112301;Parent=Physo112301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 509800 510939 . - 0 ID=Physo112301;Parent=Physo112301;rank=1 scaffold_9 . exon 509800 510945 . - . ID=Physo112301.1;Parent=Physo112301;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 511993 514638 . - . ID=Physo129859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90136;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 511993 514638 . - . ID=Physo129859;Parent=Physo129859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 511993 514638 . - 0 ID=Physo129859;Parent=Physo129859;rank=1 scaffold_9 . exon 511993 514638 . - . ID=Physo129859.1;Parent=Physo129859;constitutive=1;rank=1 scaffold_9 . biological_region 516574 516577 0.999 - . logic_name=eponine scaffold_9 . biological_region 519057 519058 0.999 + . logic_name=eponine scaffold_9 . biological_region 519828 519834 0.999 + . logic_name=eponine scaffold_9 . biological_region 522871 522872 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 516382 518853 . + . ID=Physo129860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90137;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 516382 518853 . + . ID=Physo129860;Parent=Physo129860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 516382 516571 . + . ID=Physo129860.1;Parent=Physo129860;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 516389 516571 . + 0 ID=Physo129860;Parent=Physo129860;rank=1 scaffold_9 . CDS 516653 516730 . + 0 ID=Physo129860;Parent=Physo129860;rank=2 scaffold_9 . exon 516653 516730 . + . ID=Physo129860.2;Parent=Physo129860;constitutive=1;rank=2 scaffold_9 . CDS 516801 516920 . + 0 ID=Physo129860;Parent=Physo129860;rank=3 scaffold_9 . exon 516801 516920 . + . ID=Physo129860.3;Parent=Physo129860;constitutive=1;rank=3 scaffold_9 . CDS 516992 517081 . + 0 ID=Physo129860;Parent=Physo129860;rank=4 scaffold_9 . exon 516992 517081 . + . ID=Physo129860.4;Parent=Physo129860;constitutive=1;rank=4 scaffold_9 . CDS 517154 517224 . + 0 ID=Physo129860;Parent=Physo129860;rank=5 scaffold_9 . exon 517154 517224 . + . ID=Physo129860.5;Parent=Physo129860;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 517300 517414 . + 0 ID=Physo129860;Parent=Physo129860;rank=6 scaffold_9 . exon 517300 517414 . + . ID=Physo129860.6;Parent=Physo129860;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 517484 517575 . + 0 ID=Physo129860;Parent=Physo129860;rank=7 scaffold_9 . exon 517484 517575 . + . ID=Physo129860.7;Parent=Physo129860;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_9 . CDS 517686 517697 . + 0 ID=Physo129860;Parent=Physo129860;rank=8 scaffold_9 . exon 517686 517697 . + . ID=Physo129860.8;Parent=Physo129860;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_9 . CDS 517763 517977 . + 0 ID=Physo129860;Parent=Physo129860;rank=9 scaffold_9 . exon 517763 517977 . + . ID=Physo129860.9;Parent=Physo129860;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_9 . CDS 518053 518523 . + 0 ID=Physo129860;Parent=Physo129860;rank=10 scaffold_9 . exon 518053 518523 . + . ID=Physo129860.10;Parent=Physo129860;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_9 . CDS 518621 518715 . + 0 ID=Physo129860;Parent=Physo129860;rank=11 scaffold_9 . exon 518621 518853 . + . ID=Physo129860.11;Parent=Physo129860;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=11 scaffold_9 ensembl protein_coding_gene 519145 522161 . + . ID=Physo129861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90138;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 519145 522161 . + . ID=Physo129861;Parent=Physo129861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 519145 519209 . + 0 ID=Physo129861;Parent=Physo129861;rank=1 scaffold_9 . exon 519145 519209 . + . ID=Physo129861.1;Parent=Physo129861;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 519288 519489 . + 0 ID=Physo129861;Parent=Physo129861;rank=2 scaffold_9 . exon 519288 519489 . + . ID=Physo129861.2;Parent=Physo129861;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 519577 519655 . + 0 ID=Physo129861;Parent=Physo129861;rank=3 scaffold_9 . exon 519577 519655 . + . ID=Physo129861.3;Parent=Physo129861;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 519719 519999 . + 0 ID=Physo129861;Parent=Physo129861;rank=4 scaffold_9 . exon 519719 519999 . + . ID=Physo129861.4;Parent=Physo129861;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 520096 520133 . + 0 ID=Physo129861;Parent=Physo129861;rank=5 scaffold_9 . exon 520096 520133 . + . ID=Physo129861.5;Parent=Physo129861;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 520680 520988 . + 0 ID=Physo129861;Parent=Physo129861;rank=6 scaffold_9 . exon 520680 520988 . + . ID=Physo129861.6;Parent=Physo129861;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_9 . CDS 521051 521198 . + 0 ID=Physo129861;Parent=Physo129861;rank=7 scaffold_9 . exon 521051 521198 . + . ID=Physo129861.7;Parent=Physo129861;constitutive=1;ensembl_phase=2;rank=7 scaffold_9 . CDS 521261 521715 . + 0 ID=Physo129861;Parent=Physo129861;rank=8 scaffold_9 . exon 521261 521715 . + . ID=Physo129861.8;Parent=Physo129861;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_9 . CDS 521782 521917 . + 0 ID=Physo129861;Parent=Physo129861;rank=9 scaffold_9 . exon 521782 521917 . + . ID=Physo129861.9;Parent=Physo129861;constitutive=1;ensembl_phase=2;rank=9 scaffold_9 . CDS 521994 522125 . + 0 ID=Physo129861;Parent=Physo129861;rank=10 scaffold_9 . exon 521994 522125 . + . ID=Physo129861.10;Parent=Physo129861;constitutive=1;rank=10 scaffold_9 . CDS 522156 522161 . + 0 ID=Physo129861;Parent=Physo129861;rank=11 scaffold_9 . exon 522156 522161 . + . ID=Physo129861.11;Parent=Physo129861;constitutive=1;rank=11 scaffold_9 ensembl protein_coding_gene 522301 523986 . - . ID=Physo129862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90139;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 522301 523986 . - . ID=Physo129862;Parent=Physo129862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 522301 523175 . - 0 ID=Physo129862;Parent=Physo129862;rank=2 scaffold_9 . exon 522301 523175 . - . ID=Physo129862.2;Parent=Physo129862;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 523251 523986 . - 0 ID=Physo129862;Parent=Physo129862;rank=1 scaffold_9 . exon 523251 523986 . - . ID=Physo129862.1;Parent=Physo129862;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 524445 526140 . + . ID=Physo129863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90140;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 524445 526140 . + . ID=Physo129863;Parent=Physo129863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 524445 524447 . + 0 ID=Physo129863;Parent=Physo129863;rank=1 scaffold_9 . exon 524445 524447 . + . ID=Physo129863.1;Parent=Physo129863;constitutive=1;rank=1 scaffold_9 . CDS 524596 525647 . + 0 ID=Physo129863;Parent=Physo129863;rank=2 scaffold_9 . exon 524596 525647 . + . ID=Physo129863.2;Parent=Physo129863;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 525828 526140 . + 0 ID=Physo129863;Parent=Physo129863;rank=3 scaffold_9 . repeat_region 525702 525751 . ? . description=dust scaffold_9 . repeat_region 525904 525939 . ? . description=trf scaffold_9 . repeat_region 525906 525939 . ? . description=trf scaffold_9 . repeat_region 525969 525999 . ? . description=trf scaffold_9 . repeat_region 526009 526050 . ? . description=dust scaffold_9 . repeat_region 526018 526052 . ? . description=trf scaffold_9 . repeat_region 526093 526129 . ? . description=dust scaffold_9 . repeat_region 526102 526129 . ? . description=trf scaffold_9 . exon 525828 526140 . + . ID=Physo129863.3;Parent=Physo129863;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 ensembl protein_coding_gene 529280 531152 . - . ID=Physo129864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90141;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 529280 531152 . - . ID=Physo129864;Parent=Physo129864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 529280 529342 . - 0 ID=Physo129864;Parent=Physo129864;rank=8 scaffold_9 . exon 529280 529342 . - . ID=Physo129864.8;Parent=Physo129864;constitutive=1;rank=8 scaffold_9 . CDS 529411 530012 . - 0 ID=Physo129864;Parent=Physo129864;rank=7 scaffold_9 . exon 529411 530012 . - . ID=Physo129864.7;Parent=Physo129864;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 530091 530147 . - 0 ID=Physo129864;Parent=Physo129864;rank=6 scaffold_9 . exon 530091 530147 . - . ID=Physo129864.6;Parent=Physo129864;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 530213 530273 . - 0 ID=Physo129864;Parent=Physo129864;rank=5 scaffold_9 . exon 530213 530273 . - . ID=Physo129864.5;Parent=Physo129864;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_9 . CDS 530417 530482 . - 0 ID=Physo129864;Parent=Physo129864;rank=4 scaffold_9 . exon 530417 530482 . - . ID=Physo129864.4;Parent=Physo129864;constitutive=1;rank=4 scaffold_9 . CDS 530552 530644 . - 0 ID=Physo129864;Parent=Physo129864;rank=3 scaffold_9 . exon 530552 530644 . - . ID=Physo129864.3;Parent=Physo129864;constitutive=1;rank=3 scaffold_9 . CDS 530721 530842 . - 0 ID=Physo129864;Parent=Physo129864;rank=2 scaffold_9 . exon 530721 530842 . - . ID=Physo129864.2;Parent=Physo129864;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 530915 531152 . - 0 ID=Physo129864;Parent=Physo129864;rank=1 scaffold_9 . exon 530915 531152 . - . ID=Physo129864.1;Parent=Physo129864;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 531291 535397 . - . ID=Physo155889;biotype=protein_coding;external_name=C_scaffold_9000069;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 531291 535397 . - . ID=Physo155889;Parent=Physo155889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 531291 533705 . - 0 ID=Physo155889;Parent=Physo155889;rank=2 scaffold_9 . exon 531291 533705 . - . ID=Physo155889.2;Parent=Physo155889;constitutive=1;rank=2 scaffold_9 . CDS 533748 535397 . - 0 ID=Physo155889;Parent=Physo155889;rank=1 scaffold_9 . exon 533748 535397 . - . ID=Physo155889.1;Parent=Physo155889;constitutive=1;rank=1 scaffold_9 . biological_region 538925 538928 0.999 - . logic_name=eponine scaffold_9 . biological_region 541909 541912 0.999 - . logic_name=eponine scaffold_9 . biological_region 542455 542460 0.999 + . logic_name=eponine scaffold_9 . biological_region 545097 545098 0.999 + . logic_name=eponine scaffold_9 . biological_region 545208 545212 0.999 + . logic_name=eponine scaffold_9 . biological_region 545317 545323 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 537984 539020 . - . ID=Physo108421;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90017;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 537984 539020 . - . ID=Physo108421;Parent=Physo108421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 537984 539020 . - . ID=Physo108421.1;Parent=Physo108421;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 . CDS 538151 539020 . - 0 ID=Physo108421;Parent=Physo108421;rank=1 scaffold_9 ensembl protein_coding_gene 540268 542253 . - . ID=Physo108422;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90018;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 540268 542253 . - . ID=Physo108422;Parent=Physo108422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 540268 540456 . - 0 ID=Physo108422;Parent=Physo108422;rank=8 scaffold_9 . exon 540268 540456 . - . ID=Physo108422.8;Parent=Physo108422;constitutive=1;rank=8 scaffold_9 . CDS 540590 540593 . - 0 ID=Physo108422;Parent=Physo108422;rank=7 scaffold_9 . exon 540590 540593 . - . ID=Physo108422.7;Parent=Physo108422;constitutive=1;ensembl_phase=2;rank=7 scaffold_9 . CDS 540679 540717 . - 0 ID=Physo108422;Parent=Physo108422;rank=6 scaffold_9 . exon 540679 540717 . - . ID=Physo108422.6;Parent=Physo108422;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_9 . CDS 540784 540883 . - 0 ID=Physo108422;Parent=Physo108422;rank=5 scaffold_9 . exon 540784 540883 . - . ID=Physo108422.5;Parent=Physo108422;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_9 . CDS 540955 541082 . - 0 ID=Physo108422;Parent=Physo108422;rank=4 scaffold_9 . exon 540955 541082 . - . ID=Physo108422.4;Parent=Physo108422;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 541152 541278 . - 0 ID=Physo108422;Parent=Physo108422;rank=3 scaffold_9 . exon 541152 541278 . - . ID=Physo108422.3;Parent=Physo108422;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 541343 541634 . - 0 ID=Physo108422;Parent=Physo108422;rank=2 scaffold_9 . exon 541343 541634 . - . ID=Physo108422.2;Parent=Physo108422;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 541705 542253 . - 0 ID=Physo108422;Parent=Physo108422;rank=1 scaffold_9 . exon 541705 542253 . - . ID=Physo108422.1;Parent=Physo108422;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 542428 543538 . + . ID=Physo108423;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90019;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 542428 543538 . + . ID=Physo108423;Parent=Physo108423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 542428 542620 . + . ID=Physo108423.1;Parent=Physo108423;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 542444 542620 . + 0 ID=Physo108423;Parent=Physo108423;rank=1 scaffold_9 . CDS 542697 542905 . + 0 ID=Physo108423;Parent=Physo108423;rank=2 scaffold_9 . exon 542697 542905 . + . ID=Physo108423.2;Parent=Physo108423;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 542978 543168 . + 0 ID=Physo108423;Parent=Physo108423;rank=3 scaffold_9 . exon 542978 543168 . + . ID=Physo108423.3;Parent=Physo108423;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 543239 543432 . + 0 ID=Physo108423;Parent=Physo108423;rank=4 scaffold_9 . exon 543239 543538 . + . ID=Physo108423.4;Parent=Physo108423;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 536656 537982 . + . ID=Physo129867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90144;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 536656 537982 . + . ID=Physo129867;Parent=Physo129867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 536656 536829 . + 0 ID=Physo129867;Parent=Physo129867;rank=1 scaffold_9 . exon 536656 536829 . + . ID=Physo129867.1;Parent=Physo129867;constitutive=1;rank=1 scaffold_9 . CDS 536919 537324 . + 0 ID=Physo129867;Parent=Physo129867;rank=2 scaffold_9 . exon 536919 537324 . + . ID=Physo129867.2;Parent=Physo129867;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 537398 537564 . + 0 ID=Physo129867;Parent=Physo129867;rank=3 scaffold_9 . exon 537398 537564 . + . ID=Physo129867.3;Parent=Physo129867;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 537638 537805 . + 0 ID=Physo129867;Parent=Physo129867;rank=4 scaffold_9 . exon 537638 537805 . + . ID=Physo129867.4;Parent=Physo129867;constitutive=1;rank=4 scaffold_9 . CDS 537902 537982 . + 0 ID=Physo129867;Parent=Physo129867;rank=5 scaffold_9 . exon 537902 537982 . + . ID=Physo129867.5;Parent=Physo129867;constitutive=1;rank=5 scaffold_9 ensembl protein_coding_gene 539248 540027 . + . ID=Physo129869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90146;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 539248 540027 . + . ID=Physo129869;Parent=Physo129869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 539248 539284 . + . ID=Physo129869.1;Parent=Physo129869;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 539270 539284 . + 0 ID=Physo129869;Parent=Physo129869;rank=1 scaffold_9 . CDS 539363 539496 . + 0 ID=Physo129869;Parent=Physo129869;rank=2 scaffold_9 . exon 539363 539496 . + . ID=Physo129869.2;Parent=Physo129869;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 539560 539786 . + 0 ID=Physo129869;Parent=Physo129869;rank=3 scaffold_9 . exon 539560 539786 . + . ID=Physo129869.3;Parent=Physo129869;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 539864 540027 . + 0 ID=Physo129869;Parent=Physo129869;rank=4 scaffold_9 . exon 539864 540027 . + . ID=Physo129869.4;Parent=Physo129869;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 543585 545307 . - . ID=Physo129872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90149;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 543585 545307 . - . ID=Physo129872;Parent=Physo129872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 543585 545307 . - . ID=Physo129872.1;Parent=Physo129872;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 . CDS 543586 545307 . - 0 ID=Physo129872;Parent=Physo129872;rank=1 scaffold_9 . repeat_region 545783 545792 . ? . description=dust scaffold_9 ensembl protein_coding_gene 547108 548998 . + . ID=Physo129873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90150;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 547108 548998 . + . ID=Physo129873;Parent=Physo129873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 547108 547518 . + 0 ID=Physo129873;Parent=Physo129873;rank=1 scaffold_9 . exon 547108 547518 . + . ID=Physo129873.1;Parent=Physo129873;constitutive=1;rank=1 scaffold_9 . CDS 547616 548998 . + 0 ID=Physo129873;Parent=Physo129873;rank=2 scaffold_9 . exon 547616 548998 . + . ID=Physo129873.2;Parent=Physo129873;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 549118 550365 . - . ID=Physo129874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90151;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 549118 550365 . - . ID=Physo129874;Parent=Physo129874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 549118 550365 . - 0 ID=Physo129874;Parent=Physo129874;rank=1 scaffold_9 . exon 549118 550365 . - . ID=Physo129874.1;Parent=Physo129874;constitutive=1;rank=1 scaffold_9 . repeat_region 557779 557805 . ? . description=trf scaffold_9 . biological_region 561655 561657 0.999 - . logic_name=eponine scaffold_9 . biological_region 561710 561714 0.999 + . logic_name=eponine scaffold_9 . biological_region 561750 561754 0.999 + . logic_name=eponine scaffold_9 . biological_region 561823 561826 0.999 - . logic_name=eponine scaffold_9 . biological_region 563641 563642 0.999 + . logic_name=eponine scaffold_9 . biological_region 563680 563682 0.999 + . logic_name=eponine scaffold_9 . biological_region 564362 564362 0.999 + . logic_name=eponine scaffold_9 . biological_region 564423 564429 0.999 + . logic_name=eponine scaffold_9 . biological_region 564447 564453 0.999 - . logic_name=eponine scaffold_9 . biological_region 564467 564470 0.999 + . logic_name=eponine scaffold_9 . biological_region 564502 564508 0.999 + . logic_name=eponine scaffold_9 . biological_region 564600 564605 0.999 - . logic_name=eponine scaffold_9 . biological_region 564622 564628 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 560451 561906 . - . ID=Physo129878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90155;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 560451 561906 . - . ID=Physo129878;Parent=Physo129878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 560451 561906 . - . ID=Physo129878.1;Parent=Physo129878;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 . CDS 560629 561906 . - 0 ID=Physo129878;Parent=Physo129878;rank=1 scaffold_9 ensembl protein_coding_gene 562162 564628 . - . ID=Physo129879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90156;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 562162 564628 . - . ID=Physo129879;Parent=Physo129879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 562162 562281 . - 0 ID=Physo129879;Parent=Physo129879;rank=6 scaffold_9 . exon 562162 562281 . - . ID=Physo129879.6;Parent=Physo129879;constitutive=1;rank=6 scaffold_9 . CDS 562356 562506 . - 0 ID=Physo129879;Parent=Physo129879;rank=5 scaffold_9 . exon 562356 562506 . - . ID=Physo129879.5;Parent=Physo129879;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 562572 562636 . - 0 ID=Physo129879;Parent=Physo129879;rank=4 scaffold_9 . exon 562572 562636 . - . ID=Physo129879.4;Parent=Physo129879;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 562706 562931 . - 0 ID=Physo129879;Parent=Physo129879;rank=3 scaffold_9 . exon 562706 562931 . - . ID=Physo129879.3;Parent=Physo129879;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 563005 563264 . - 0 ID=Physo129879;Parent=Physo129879;rank=2 scaffold_9 . exon 563005 563264 . - . ID=Physo129879.2;Parent=Physo129879;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 563360 564613 . - 0 ID=Physo129879;Parent=Physo129879;rank=1 scaffold_9 . exon 563360 564628 . - . ID=Physo129879.1;Parent=Physo129879;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 556299 558006 . - . ID=Physo155893;biotype=protein_coding;external_name=C_scaffold_9000073;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 556299 558006 . - . ID=Physo155893;Parent=Physo155893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 556299 556325 . - 0 ID=Physo155893;Parent=Physo155893;rank=6 scaffold_9 . exon 556299 556325 . - . ID=Physo155893.6;Parent=Physo155893;constitutive=1;rank=6 scaffold_9 . CDS 556438 556536 . - 0 ID=Physo155893;Parent=Physo155893;rank=5 scaffold_9 . exon 556438 556536 . - . ID=Physo155893.5;Parent=Physo155893;constitutive=1;rank=5 scaffold_9 . CDS 556607 556729 . - 0 ID=Physo155893;Parent=Physo155893;rank=4 scaffold_9 . exon 556607 556729 . - . ID=Physo155893.4;Parent=Physo155893;constitutive=1;rank=4 scaffold_9 . CDS 556760 556933 . - 0 ID=Physo155893;Parent=Physo155893;rank=3 scaffold_9 . exon 556760 556933 . - . ID=Physo155893.3;Parent=Physo155893;constitutive=1;rank=3 scaffold_9 . CDS 557180 557341 . - 0 ID=Physo155893;Parent=Physo155893;rank=2 scaffold_9 . exon 557180 557341 . - . ID=Physo155893.2;Parent=Physo155893;constitutive=1;rank=2 scaffold_9 . CDS 557410 558006 . - 0 ID=Physo155893;Parent=Physo155893;rank=1 scaffold_9 . exon 557410 558006 . - . ID=Physo155893.1;Parent=Physo155893;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 558165 560409 . + . ID=Physo155894;biotype=protein_coding;external_name=C_scaffold_9000074;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 558165 560409 . + . ID=Physo155894;Parent=Physo155894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 558165 558772 . + 0 ID=Physo155894;Parent=Physo155894;rank=1 scaffold_9 . exon 558165 558772 . + . ID=Physo155894.1;Parent=Physo155894;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 558800 559714 . + 0 ID=Physo155894;Parent=Physo155894;rank=2 scaffold_9 . exon 558800 559714 . + . ID=Physo155894.2;Parent=Physo155894;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 559840 560086 . + 0 ID=Physo155894;Parent=Physo155894;rank=3 scaffold_9 . exon 559840 560086 . + . ID=Physo155894.3;Parent=Physo155894;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 560163 560409 . + 0 ID=Physo155894;Parent=Physo155894;rank=4 scaffold_9 . exon 560163 560409 . + . ID=Physo155894.4;Parent=Physo155894;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 565347 566958 . + . ID=Physo108424;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90020;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 565347 566958 . + . ID=Physo108424;Parent=Physo108424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 565347 565520 . + 0 ID=Physo108424;Parent=Physo108424;rank=1 scaffold_9 . exon 565347 565520 . + . ID=Physo108424.1;Parent=Physo108424;constitutive=1;rank=1 scaffold_9 . CDS 565605 566069 . + 0 ID=Physo108424;Parent=Physo108424;rank=2 scaffold_9 . exon 565605 566069 . + . ID=Physo108424.2;Parent=Physo108424;constitutive=1;rank=2 scaffold_9 . CDS 566114 566905 . + 0 ID=Physo108424;Parent=Physo108424;rank=3 scaffold_9 . exon 566114 566958 . + . ID=Physo108424.3;Parent=Physo108424;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_9 ensembl protein_coding_gene 567123 570177 . + . ID=Physo129881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90158;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 567123 570177 . + . ID=Physo129881;Parent=Physo129881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 567123 567305 . + 0 ID=Physo129881;Parent=Physo129881;rank=1 scaffold_9 . exon 567123 567305 . + . ID=Physo129881.1;Parent=Physo129881;constitutive=1;rank=1 scaffold_9 . CDS 567387 567638 . + 0 ID=Physo129881;Parent=Physo129881;rank=2 scaffold_9 . exon 567387 567638 . + . ID=Physo129881.2;Parent=Physo129881;constitutive=1;rank=2 scaffold_9 . CDS 567688 567851 . + 0 ID=Physo129881;Parent=Physo129881;rank=3 scaffold_9 . exon 567688 567851 . + . ID=Physo129881.3;Parent=Physo129881;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 567912 567989 . + 0 ID=Physo129881;Parent=Physo129881;rank=4 scaffold_9 . exon 567912 567989 . + . ID=Physo129881.4;Parent=Physo129881;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_9 . CDS 568068 568146 . + 0 ID=Physo129881;Parent=Physo129881;rank=5 scaffold_9 . exon 568068 568146 . + . ID=Physo129881.5;Parent=Physo129881;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 568219 568581 . + 0 ID=Physo129881;Parent=Physo129881;rank=6 scaffold_9 . exon 568219 568581 . + . ID=Physo129881.6;Parent=Physo129881;constitutive=1;rank=6 scaffold_9 . CDS 568655 568779 . + 0 ID=Physo129881;Parent=Physo129881;rank=7 scaffold_9 . exon 568655 568779 . + . ID=Physo129881.7;Parent=Physo129881;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_9 . CDS 568853 569100 . + 0 ID=Physo129881;Parent=Physo129881;rank=8 scaffold_9 . exon 568853 569100 . + . ID=Physo129881.8;Parent=Physo129881;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_9 . CDS 569307 569455 . + 0 ID=Physo129881;Parent=Physo129881;rank=9 scaffold_9 . exon 569307 569455 . + . ID=Physo129881.9;Parent=Physo129881;constitutive=1;ensembl_phase=1;rank=9 scaffold_9 . CDS 569535 569750 . + 0 ID=Physo129881;Parent=Physo129881;rank=10 scaffold_9 . exon 569535 569750 . + . ID=Physo129881.10;Parent=Physo129881;constitutive=1;rank=10 scaffold_9 . CDS 569825 569988 . + 0 ID=Physo129881;Parent=Physo129881;rank=11 scaffold_9 . exon 569825 569988 . + . ID=Physo129881.11;Parent=Physo129881;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_9 . CDS 570049 570175 . + 0 ID=Physo129881;Parent=Physo129881;rank=12 scaffold_9 . exon 570049 570177 . + . ID=Physo129881.12;Parent=Physo129881;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=12 scaffold_9 ensembl protein_coding_gene 572178 575278 . + . ID=Physo129882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90159;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 572178 575278 . + . ID=Physo129882;Parent=Physo129882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 572178 572205 . + 0 ID=Physo129882;Parent=Physo129882;rank=1 scaffold_9 . exon 572178 572205 . + . ID=Physo129882.1;Parent=Physo129882;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 572278 572341 . + 0 ID=Physo129882;Parent=Physo129882;rank=2 scaffold_9 . exon 572278 572341 . + . ID=Physo129882.2;Parent=Physo129882;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 572453 572529 . + 0 ID=Physo129882;Parent=Physo129882;rank=3 scaffold_9 . exon 572453 572529 . + . ID=Physo129882.3;Parent=Physo129882;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 572644 572778 . + 0 ID=Physo129882;Parent=Physo129882;rank=4 scaffold_9 . exon 572644 572778 . + . ID=Physo129882.4;Parent=Physo129882;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 572851 573348 . + 0 ID=Physo129882;Parent=Physo129882;rank=5 scaffold_9 . exon 572851 573348 . + . ID=Physo129882.5;Parent=Physo129882;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 573631 573640 . + 0 ID=Physo129882;Parent=Physo129882;rank=6 scaffold_9 . exon 573631 573640 . + . ID=Physo129882.6;Parent=Physo129882;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_9 . CDS 573973 574533 . + 0 ID=Physo129882;Parent=Physo129882;rank=7 scaffold_9 . exon 573973 574533 . + . ID=Physo129882.7;Parent=Physo129882;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_9 . CDS 574600 575278 . + 0 ID=Physo129882;Parent=Physo129882;rank=8 scaffold_9 . exon 574600 575278 . + . ID=Physo129882.8;Parent=Physo129882;constitutive=1;ensembl_phase=2;rank=8 scaffold_9 . repeat_region 576134 576282 . ? . description=trf scaffold_9 . repeat_region 577914 577921 . ? . description=dust scaffold_9 . repeat_region 581220 581243 . ? . description=trf scaffold_9 . biological_region 581299 581299 0.999 - . logic_name=eponine scaffold_9 . repeat_region 581708 581874 . ? . description=trf scaffold_9 . repeat_region 581822 581841 . ? . description=trf scaffold_9 . repeat_region 582281 582315 . ? . description=trf scaffold_9 . repeat_region 582405 582486 . ? . description=dust scaffold_9 . repeat_region 582519 582553 . ? . description=trf scaffold_9 . repeat_region 582950 583116 . ? . description=trf scaffold_9 . repeat_region 582983 583002 . ? . description=trf scaffold_9 . biological_region 583526 583526 0.999 + . logic_name=eponine scaffold_9 . repeat_region 583581 583604 . ? . description=trf scaffold_9 ensembl protein_coding_gene 581194 581765 . - . ID=Physo129883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90160;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 581194 581765 . - . ID=Physo129883;Parent=Physo129883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 581194 581583 . - 0 ID=Physo129883;Parent=Physo129883;rank=2 scaffold_9 . exon 581194 581583 . - . ID=Physo129883.2;Parent=Physo129883;constitutive=1;rank=2 scaffold_9 . CDS 581682 581765 . - 0 ID=Physo129883;Parent=Physo129883;rank=1 scaffold_9 . exon 581682 581765 . - . ID=Physo129883.1;Parent=Physo129883;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 583059 583630 . + . ID=Physo129884;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90161;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 583059 583630 . + . ID=Physo129884;Parent=Physo129884;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 583059 583142 . + 0 ID=Physo129884;Parent=Physo129884;rank=1 scaffold_9 . exon 583059 583142 . + . ID=Physo129884.1;Parent=Physo129884;constitutive=1;rank=1 scaffold_9 . CDS 583241 583630 . + 0 ID=Physo129884;Parent=Physo129884;rank=2 scaffold_9 . exon 583241 583630 . + . ID=Physo129884.2;Parent=Physo129884;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 585723 586611 . + . ID=Physo129885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90162;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 585723 586611 . + . ID=Physo129885;Parent=Physo129885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 585723 585899 . + 0 ID=Physo129885;Parent=Physo129885;rank=1 scaffold_9 . exon 585723 585899 . + . ID=Physo129885.1;Parent=Physo129885;constitutive=1;rank=1 scaffold_9 . CDS 586093 586611 . + 0 ID=Physo129885;Parent=Physo129885;rank=2 scaffold_9 . exon 586093 586611 . + . ID=Physo129885.2;Parent=Physo129885;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 588946 591977 . + . ID=Physo129886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90163;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 588946 591977 . + . ID=Physo129886;Parent=Physo129886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 588946 588966 . + 0 ID=Physo129886;Parent=Physo129886;rank=1 scaffold_9 . exon 588946 588966 . + . ID=Physo129886.1;Parent=Physo129886;constitutive=1;rank=1 scaffold_9 . CDS 589027 589476 . + 0 ID=Physo129886;Parent=Physo129886;rank=2 scaffold_9 . exon 589027 589476 . + . ID=Physo129886.2;Parent=Physo129886;constitutive=1;rank=2 scaffold_9 . CDS 589556 589990 . + 0 ID=Physo129886;Parent=Physo129886;rank=3 scaffold_9 . exon 589556 589990 . + . ID=Physo129886.3;Parent=Physo129886;constitutive=1;rank=3 scaffold_9 . CDS 590075 590133 . + 0 ID=Physo129886;Parent=Physo129886;rank=4 scaffold_9 . exon 590075 590133 . + . ID=Physo129886.4;Parent=Physo129886;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 590914 591026 . + 0 ID=Physo129886;Parent=Physo129886;rank=5 scaffold_9 . exon 590914 591026 . + . ID=Physo129886.5;Parent=Physo129886;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 591112 591275 . + 0 ID=Physo129886;Parent=Physo129886;rank=6 scaffold_9 . exon 591112 591275 . + . ID=Physo129886.6;Parent=Physo129886;constitutive=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 591345 591697 . + 0 ID=Physo129886;Parent=Physo129886;rank=7 scaffold_9 . exon 591345 591697 . + . ID=Physo129886.7;Parent=Physo129886;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_9 . CDS 591722 591977 . + 0 ID=Physo129886;Parent=Physo129886;rank=8 scaffold_9 . exon 591722 591977 . + . ID=Physo129886.8;Parent=Physo129886;constitutive=1;ensembl_phase=2;rank=8 scaffold_9 ensembl protein_coding_gene 592800 593915 . - . ID=Physo129887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90164;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 592800 593915 . - . ID=Physo129887;Parent=Physo129887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 592800 593915 . - 0 ID=Physo129887;Parent=Physo129887;rank=1 scaffold_9 . exon 592800 593915 . - . ID=Physo129887.1;Parent=Physo129887;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 594131 594787 . - . ID=Physo129888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90165;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 594131 594787 . - . ID=Physo129888;Parent=Physo129888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 594131 594787 . - 0 ID=Physo129888;Parent=Physo129888;rank=1 scaffold_9 . exon 594131 594787 . - . ID=Physo129888.1;Parent=Physo129888;constitutive=1;rank=1 scaffold_9 . biological_region 597871 597871 0.999 - . logic_name=eponine scaffold_9 . repeat_region 598005 598012 . ? . description=dust scaffold_9 . biological_region 603371 603374 0.999 + . logic_name=eponine scaffold_9 . biological_region 603391 603392 0.999 - . logic_name=eponine scaffold_9 . biological_region 603463 603468 0.999 - . logic_name=eponine scaffold_9 . biological_region 603510 603515 0.999 - . logic_name=eponine scaffold_9 . biological_region 604742 604745 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 598165 599784 . + . ID=Physo129889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90166;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 598165 599784 . + . ID=Physo129889;Parent=Physo129889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 598165 599784 . + 0 ID=Physo129889;Parent=Physo129889;rank=1 scaffold_9 . exon 598165 599784 . + . ID=Physo129889.1;Parent=Physo129889;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 600719 603405 . - . ID=Physo155898;biotype=protein_coding;external_name=C_scaffold_9000078;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 600719 603405 . - . ID=Physo155898;Parent=Physo155898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 600719 600748 . - 0 ID=Physo155898;Parent=Physo155898;rank=9 scaffold_9 . exon 600719 600748 . - . ID=Physo155898.9;Parent=Physo155898;constitutive=1;rank=9 scaffold_9 . CDS 600862 600935 . - 0 ID=Physo155898;Parent=Physo155898;rank=8 scaffold_9 . exon 600862 600935 . - . ID=Physo155898.8;Parent=Physo155898;constitutive=1;ensembl_phase=1;rank=8 scaffold_9 . CDS 601014 601351 . - 0 ID=Physo155898;Parent=Physo155898;rank=7 scaffold_9 . exon 601014 601351 . - . ID=Physo155898.7;Parent=Physo155898;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_9 . CDS 601400 601485 . - 0 ID=Physo155898;Parent=Physo155898;rank=6 scaffold_9 . exon 601400 601485 . - . ID=Physo155898.6;Parent=Physo155898;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . CDS 601556 601819 . - 0 ID=Physo155898;Parent=Physo155898;rank=5 scaffold_9 . exon 601556 601819 . - . ID=Physo155898.5;Parent=Physo155898;constitutive=1;rank=5 scaffold_9 . CDS 601895 602605 . - 0 ID=Physo155898;Parent=Physo155898;rank=4 scaffold_9 . exon 601895 602605 . - . ID=Physo155898.4;Parent=Physo155898;constitutive=1;rank=4 scaffold_9 . CDS 602686 602991 . - 0 ID=Physo155898;Parent=Physo155898;rank=3 scaffold_9 . exon 602686 602991 . - . ID=Physo155898.3;Parent=Physo155898;constitutive=1;rank=3 scaffold_9 . CDS 603081 603263 . - 0 ID=Physo155898;Parent=Physo155898;rank=2 scaffold_9 . exon 603081 603263 . - . ID=Physo155898.2;Parent=Physo155898;constitutive=1;rank=2 scaffold_9 . CDS 603373 603405 . - 0 ID=Physo155898;Parent=Physo155898;rank=1 scaffold_9 . exon 603373 603405 . - . ID=Physo155898.1;Parent=Physo155898;constitutive=1;rank=1 scaffold_9 . repeat_region 606132 606153 . ? . description=trf scaffold_9 ensembl protein_coding_gene 612960 614762 . + . ID=Physo129894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90171;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 612960 614762 . + . ID=Physo129894;Parent=Physo129894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 612960 613094 . + 0 ID=Physo129894;Parent=Physo129894;rank=1 scaffold_9 . exon 612960 613094 . + . ID=Physo129894.1;Parent=Physo129894;constitutive=1;rank=1 scaffold_9 . CDS 613197 614762 . + 0 ID=Physo129894;Parent=Physo129894;rank=2 scaffold_9 . exon 613197 614762 . + . ID=Physo129894.2;Parent=Physo129894;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 605949 607295 . + . ID=Physo155899;biotype=protein_coding;external_name=C_scaffold_9000079;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 605949 607295 . + . ID=Physo155899;Parent=Physo155899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 605949 606152 . + 0 ID=Physo155899;Parent=Physo155899;rank=1 scaffold_9 . exon 605949 606152 . + . ID=Physo155899.1;Parent=Physo155899;constitutive=1;rank=1 scaffold_9 . CDS 606396 607295 . + 0 ID=Physo155899;Parent=Physo155899;rank=2 scaffold_9 . exon 606396 607295 . + . ID=Physo155899.2;Parent=Physo155899;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 607538 610320 . - . ID=Physo155900;biotype=protein_coding;external_name=C_scaffold_9000080;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 607538 610320 . - . ID=Physo155900;Parent=Physo155900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 607538 608168 . - 0 ID=Physo155900;Parent=Physo155900;rank=9 scaffold_9 . exon 607538 608168 . - . ID=Physo155900.9;Parent=Physo155900;constitutive=1;ensembl_phase=2;rank=9 scaffold_9 . CDS 608190 608616 . - 0 ID=Physo155900;Parent=Physo155900;rank=8 scaffold_9 . exon 608190 608616 . - . ID=Physo155900.8;Parent=Physo155900;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_9 . CDS 608731 608901 . - 0 ID=Physo155900;Parent=Physo155900;rank=7 scaffold_9 . exon 608731 608901 . - . ID=Physo155900.7;Parent=Physo155900;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 609139 609190 . - 0 ID=Physo155900;Parent=Physo155900;rank=6 scaffold_9 . exon 609139 609190 . - . ID=Physo155900.6;Parent=Physo155900;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_9 . CDS 609212 609304 . - 0 ID=Physo155900;Parent=Physo155900;rank=5 scaffold_9 . exon 609212 609304 . - . ID=Physo155900.5;Parent=Physo155900;constitutive=1;rank=5 scaffold_9 . CDS 609675 609890 . - 0 ID=Physo155900;Parent=Physo155900;rank=4 scaffold_9 . exon 609675 609890 . - . ID=Physo155900.4;Parent=Physo155900;constitutive=1;rank=4 scaffold_9 . CDS 609945 610016 . - 0 ID=Physo155900;Parent=Physo155900;rank=3 scaffold_9 . exon 609945 610016 . - . ID=Physo155900.3;Parent=Physo155900;constitutive=1;rank=3 scaffold_9 . CDS 610099 610154 . - 0 ID=Physo155900;Parent=Physo155900;rank=2 scaffold_9 . exon 610099 610154 . - . ID=Physo155900.2;Parent=Physo155900;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 610194 610320 . - 0 ID=Physo155900;Parent=Physo155900;rank=1 scaffold_9 . exon 610194 610320 . - . ID=Physo155900.1;Parent=Physo155900;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 610763 612568 . + . ID=Physo155902;biotype=protein_coding;external_name=C_scaffold_9000082;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 610763 612568 . + . ID=Physo155902;Parent=Physo155902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 610763 610836 . + 0 ID=Physo155902;Parent=Physo155902;rank=1 scaffold_9 . exon 610763 610836 . + . ID=Physo155902.1;Parent=Physo155902;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 610956 611088 . + 0 ID=Physo155902;Parent=Physo155902;rank=2 scaffold_9 . exon 610956 611088 . + . ID=Physo155902.2;Parent=Physo155902;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 611353 611565 . + 0 ID=Physo155902;Parent=Physo155902;rank=3 scaffold_9 . exon 611353 611565 . + . ID=Physo155902.3;Parent=Physo155902;constitutive=1;rank=3 scaffold_9 . CDS 611634 611867 . + 0 ID=Physo155902;Parent=Physo155902;rank=4 scaffold_9 . exon 611634 611867 . + . ID=Physo155902.4;Parent=Physo155902;constitutive=1;rank=4 scaffold_9 . CDS 611939 612112 . + 0 ID=Physo155902;Parent=Physo155902;rank=5 scaffold_9 . exon 611939 612112 . + . ID=Physo155902.5;Parent=Physo155902;constitutive=1;rank=5 scaffold_9 . CDS 612200 612568 . + 0 ID=Physo155902;Parent=Physo155902;rank=6 scaffold_9 . exon 612200 612568 . + . ID=Physo155902.6;Parent=Physo155902;constitutive=1;rank=6 scaffold_9 . biological_region 616933 616939 0.999 + . logic_name=eponine scaffold_9 . biological_region 616960 616965 0.999 + . logic_name=eponine scaffold_9 . biological_region 617005 617011 0.999 + . logic_name=eponine scaffold_9 . biological_region 617041 617046 0.999 + . logic_name=eponine scaffold_9 . biological_region 617052 617056 0.999 - . logic_name=eponine scaffold_9 . biological_region 617064 617073 0.999 - . logic_name=eponine scaffold_9 . biological_region 617065 617071 0.999 + . logic_name=eponine scaffold_9 . biological_region 617082 617092 0.999 - . logic_name=eponine scaffold_9 . biological_region 617085 617094 0.999 + . logic_name=eponine scaffold_9 . biological_region 617143 617145 0.999 + . logic_name=eponine scaffold_9 . biological_region 617191 617197 0.999 - . logic_name=eponine scaffold_9 . biological_region 618657 618658 0.999 + . logic_name=eponine scaffold_9 . biological_region 621368 621370 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 614965 617340 . - . ID=Physo129895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90172;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 614965 617340 . - . ID=Physo129895;Parent=Physo129895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 614965 615115 . - 0 ID=Physo129895;Parent=Physo129895;rank=7 scaffold_9 . exon 614965 615115 . - . ID=Physo129895.7;Parent=Physo129895;constitutive=1;ensembl_phase=2;rank=7 scaffold_9 . CDS 615193 615611 . - 0 ID=Physo129895;Parent=Physo129895;rank=6 scaffold_9 . exon 615193 615611 . - . ID=Physo129895.6;Parent=Physo129895;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . CDS 615748 615953 . - 0 ID=Physo129895;Parent=Physo129895;rank=5 scaffold_9 . exon 615748 615953 . - . ID=Physo129895.5;Parent=Physo129895;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 616027 616171 . - 0 ID=Physo129895;Parent=Physo129895;rank=4 scaffold_9 . exon 616027 616171 . - . ID=Physo129895.4;Parent=Physo129895;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . CDS 616253 616347 . - 0 ID=Physo129895;Parent=Physo129895;rank=3 scaffold_9 . exon 616253 616347 . - . ID=Physo129895.3;Parent=Physo129895;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 616419 616587 . - 0 ID=Physo129895;Parent=Physo129895;rank=2 scaffold_9 . exon 616419 616587 . - . ID=Physo129895.2;Parent=Physo129895;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 616678 617316 . - 0 ID=Physo129895;Parent=Physo129895;rank=1 scaffold_9 . exon 616678 617340 . - . ID=Physo129895.1;Parent=Physo129895;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 618780 621114 . + . ID=Physo155903;biotype=protein_coding;external_name=C_scaffold_9000083;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 618780 621114 . + . ID=Physo155903;Parent=Physo155903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 618780 619141 . + 0 ID=Physo155903;Parent=Physo155903;rank=1 scaffold_9 . exon 618780 619141 . + . ID=Physo155903.1;Parent=Physo155903;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 619175 619615 . + 0 ID=Physo155903;Parent=Physo155903;rank=2 scaffold_9 . exon 619175 619615 . + . ID=Physo155903.2;Parent=Physo155903;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 620100 621114 . + 0 ID=Physo155903;Parent=Physo155903;rank=3 scaffold_9 . exon 620100 621114 . + . ID=Physo155903.3;Parent=Physo155903;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 ensembl protein_coding_gene 621180 623315 . - . ID=Physo155904;biotype=protein_coding;external_name=C_scaffold_9000084;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 621180 623315 . - . ID=Physo155904;Parent=Physo155904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 621180 621908 . - 0 ID=Physo155904;Parent=Physo155904;rank=5 scaffold_9 . exon 621180 621908 . - . ID=Physo155904.5;Parent=Physo155904;constitutive=1;rank=5 scaffold_9 . CDS 621993 622252 . - 0 ID=Physo155904;Parent=Physo155904;rank=4 scaffold_9 . exon 621993 622252 . - . ID=Physo155904.4;Parent=Physo155904;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 622367 622634 . - 0 ID=Physo155904;Parent=Physo155904;rank=3 scaffold_9 . exon 622367 622634 . - . ID=Physo155904.3;Parent=Physo155904;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 622696 623023 . - 0 ID=Physo155904;Parent=Physo155904;rank=2 scaffold_9 . exon 622696 623023 . - . ID=Physo155904.2;Parent=Physo155904;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 623095 623315 . - 0 ID=Physo155904;Parent=Physo155904;rank=1 scaffold_9 . exon 623095 623315 . - . ID=Physo155904.1;Parent=Physo155904;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . repeat_region 627193 627242 . ? . description=dust scaffold_9 . repeat_region 628905 634244 . ? . description=dust scaffold_9 ensembl protein_coding_gene 627599 628665 . - . ID=Physo129899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90176;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 627599 628665 . - . ID=Physo129899;Parent=Physo129899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 627599 627602 . - 0 ID=Physo129899;Parent=Physo129899;rank=2 scaffold_9 . exon 627599 627602 . - . ID=Physo129899.2;Parent=Physo129899;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 627650 628665 . - 0 ID=Physo129899;Parent=Physo129899;rank=1 scaffold_9 . exon 627650 628665 . - . ID=Physo129899.1;Parent=Physo129899;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . biological_region 636242 636247 0.999 - . logic_name=eponine scaffold_9 . biological_region 640622 640623 0.999 + . logic_name=eponine scaffold_9 . biological_region 644443 644447 0.999 + . logic_name=eponine scaffold_9 . repeat_region 644509 644785 . ? . description=trf scaffold_9 ensembl protein_coding_gene 634737 635410 . - . ID=Physo108425;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90021;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 634737 635410 . - . ID=Physo108425;Parent=Physo108425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 634737 634891 . - . ID=Physo108425.2;Parent=Physo108425;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_9 . CDS 634808 634891 . - 0 ID=Physo108425;Parent=Physo108425;rank=2 scaffold_9 . CDS 634931 635410 . - 0 ID=Physo108425;Parent=Physo108425;rank=1 scaffold_9 . exon 634931 635410 . - . ID=Physo108425.1;Parent=Physo108425;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 635576 636352 . - . ID=Physo129901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90178;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 635576 636352 . - . ID=Physo129901;Parent=Physo129901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 635576 636352 . - . ID=Physo129901.1;Parent=Physo129901;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 . CDS 635660 636352 . - 0 ID=Physo129901;Parent=Physo129901;rank=1 scaffold_9 ensembl protein_coding_gene 636922 637527 . + . ID=Physo129902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90179;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 636922 637527 . + . ID=Physo129902;Parent=Physo129902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 636922 637527 . + 0 ID=Physo129902;Parent=Physo129902;rank=1 scaffold_9 . exon 636922 637527 . + . ID=Physo129902.1;Parent=Physo129902;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 638891 640159 . - . ID=Physo129903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90180;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 638891 640159 . - . ID=Physo129903;Parent=Physo129903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 638891 638913 . - 0 ID=Physo129903;Parent=Physo129903;rank=6 scaffold_9 . exon 638891 638913 . - . ID=Physo129903.6;Parent=Physo129903;constitutive=1;ensembl_phase=1;rank=6 scaffold_9 . CDS 639016 639094 . - 0 ID=Physo129903;Parent=Physo129903;rank=5 scaffold_9 . exon 639016 639094 . - . ID=Physo129903.5;Parent=Physo129903;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_9 . CDS 639182 639427 . - 0 ID=Physo129903;Parent=Physo129903;rank=4 scaffold_9 . exon 639182 639427 . - . ID=Physo129903.4;Parent=Physo129903;constitutive=1;rank=4 scaffold_9 . CDS 639505 639585 . - 0 ID=Physo129903;Parent=Physo129903;rank=3 scaffold_9 . exon 639505 639585 . - . ID=Physo129903.3;Parent=Physo129903;constitutive=1;rank=3 scaffold_9 . CDS 639659 639992 . - 0 ID=Physo129903;Parent=Physo129903;rank=2 scaffold_9 . exon 639659 639992 . - . ID=Physo129903.2;Parent=Physo129903;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 640073 640110 . - 0 ID=Physo129903;Parent=Physo129903;rank=1 scaffold_9 . exon 640073 640159 . - . ID=Physo129903.1;Parent=Physo129903;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 640524 641522 . + . ID=Physo129904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90181;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 640524 641522 . + . ID=Physo129904;Parent=Physo129904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 640524 641124 . + 0 ID=Physo129904;Parent=Physo129904;rank=1 scaffold_9 . exon 640524 641124 . + . ID=Physo129904.1;Parent=Physo129904;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 641269 641522 . + 0 ID=Physo129904;Parent=Physo129904;rank=2 scaffold_9 . exon 641269 641522 . + . ID=Physo129904.2;Parent=Physo129904;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . repeat_region 652165 652184 . ? . description=dust scaffold_9 . repeat_region 652307 653046 . - . description=GypsyPi-1c_I-int scaffold_9 . repeat_region 653486 654412 . - . description=GypsyPi-1c_I-int scaffold_9 . repeat_region 654413 654694 . - . description=GypsyPi-1c_I-int scaffold_9 ensembl protein_coding_gene 650194 651593 . + . ID=Physo129905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90182;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 650194 651593 . + . ID=Physo129905;Parent=Physo129905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 650194 650657 . + 0 ID=Physo129905;Parent=Physo129905;rank=1 scaffold_9 . exon 650194 650657 . + . ID=Physo129905.1;Parent=Physo129905;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 650724 651123 . + 0 ID=Physo129905;Parent=Physo129905;rank=2 scaffold_9 . exon 650724 651123 . + . ID=Physo129905.2;Parent=Physo129905;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 651216 651247 . + 0 ID=Physo129905;Parent=Physo129905;rank=3 scaffold_9 . exon 651216 651247 . + . ID=Physo129905.3;Parent=Physo129905;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 651425 651593 . + 0 ID=Physo129905;Parent=Physo129905;rank=4 scaffold_9 . exon 651425 651593 . + . ID=Physo129905.4;Parent=Physo129905;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 ensembl protein_coding_gene 651992 654575 . - . ID=Physo129906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90183;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 651992 654575 . - . ID=Physo129906;Parent=Physo129906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 651992 651998 . - 0 ID=Physo129906;Parent=Physo129906;rank=6 scaffold_9 . exon 651992 651998 . - . ID=Physo129906.6;Parent=Physo129906;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 652039 652912 . - 0 ID=Physo129906;Parent=Physo129906;rank=5 scaffold_9 . exon 652039 652912 . - . ID=Physo129906.5;Parent=Physo129906;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_9 . CDS 653049 653194 . - 0 ID=Physo129906;Parent=Physo129906;rank=4 scaffold_9 . exon 653049 653194 . - . ID=Physo129906.4;Parent=Physo129906;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 653401 653735 . - 0 ID=Physo129906;Parent=Physo129906;rank=3 scaffold_9 . exon 653401 653735 . - . ID=Physo129906.3;Parent=Physo129906;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 653853 654062 . - 0 ID=Physo129906;Parent=Physo129906;rank=2 scaffold_9 . exon 653853 654062 . - . ID=Physo129906.2;Parent=Physo129906;constitutive=1;rank=2 scaffold_9 . CDS 654105 654575 . - 0 ID=Physo129906;Parent=Physo129906;rank=1 scaffold_9 . exon 654105 654575 . - . ID=Physo129906.1;Parent=Physo129906;constitutive=1;rank=1 scaffold_9 . repeat_region 655942 655981 . ? . description=trf scaffold_9 . repeat_region 658109 658166 . ? . description=trf scaffold_9 . repeat_region 661993 662032 . ? . description=trf scaffold_9 . repeat_region 661993 662053 . ? . description=trf scaffold_9 ensembl protein_coding_gene 657968 661479 . + . ID=Physo129907;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90184;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 657968 661479 . + . ID=Physo129907;Parent=Physo129907;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 657968 659964 . + 0 ID=Physo129907;Parent=Physo129907;rank=1 scaffold_9 . exon 657968 659964 . + . ID=Physo129907.1;Parent=Physo129907;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 660375 661479 . + 0 ID=Physo129907;Parent=Physo129907;rank=2 scaffold_9 . exon 660375 661479 . + . ID=Physo129907.2;Parent=Physo129907;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 662061 665238 . - . ID=Physo129908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90185;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 662061 665238 . - . ID=Physo129908;Parent=Physo129908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 662061 663890 . - 0 ID=Physo129908;Parent=Physo129908;rank=4 scaffold_9 . exon 662061 663890 . - . ID=Physo129908.4;Parent=Physo129908;constitutive=1;rank=4 scaffold_9 . CDS 663947 664004 . - 0 ID=Physo129908;Parent=Physo129908;rank=3 scaffold_9 . exon 663947 664004 . - . ID=Physo129908.3;Parent=Physo129908;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 664042 664687 . - 0 ID=Physo129908;Parent=Physo129908;rank=2 scaffold_9 . exon 664042 664687 . - . ID=Physo129908.2;Parent=Physo129908;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 664740 665238 . - 0 ID=Physo129908;Parent=Physo129908;rank=1 scaffold_9 . biological_region 665116 665118 0.999 - . logic_name=eponine scaffold_9 . biological_region 665139 665145 0.999 - . logic_name=eponine scaffold_9 . repeat_region 668845 668855 . ? . description=dust scaffold_9 . repeat_region 673361 673390 . ? . description=dust scaffold_9 . exon 664740 665238 . - . ID=Physo129908.1;Parent=Physo129908;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 674179 676632 . - . ID=Physo129909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90186;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 674179 676632 . - . ID=Physo129909;Parent=Physo129909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 674179 674355 . - 0 ID=Physo129909;Parent=Physo129909;rank=9 scaffold_9 . exon 674179 674355 . - . ID=Physo129909.9;Parent=Physo129909;constitutive=1;rank=9 scaffold_9 . CDS 674433 674562 . - 0 ID=Physo129909;Parent=Physo129909;rank=8 scaffold_9 . CDS 674646 674708 . - 0 ID=Physo129909;Parent=Physo129909;rank=7 scaffold_9 . CDS 674767 674873 . - 0 ID=Physo129909;Parent=Physo129909;rank=6 scaffold_9 . CDS 674947 675104 . - 0 ID=Physo129909;Parent=Physo129909;rank=5 scaffold_9 . CDS 675183 675282 . - 0 ID=Physo129909;Parent=Physo129909;rank=4 scaffold_9 . CDS 675348 675533 . - 0 ID=Physo129909;Parent=Physo129909;rank=3 scaffold_9 . CDS 675601 675666 . - 0 ID=Physo129909;Parent=Physo129909;rank=2 scaffold_9 . CDS 675730 676632 . - 0 ID=Physo129909;Parent=Physo129909;rank=1 scaffold_9 . repeat_region 680780 680832 . ? . description=trf scaffold_9 . exon 674433 674562 . - . ID=Physo129909.8;Parent=Physo129909;constitutive=1;ensembl_phase=2;rank=8 scaffold_9 . exon 674646 674708 . - . ID=Physo129909.7;Parent=Physo129909;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_9 . exon 674767 674873 . - . ID=Physo129909.6;Parent=Physo129909;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . exon 674947 675104 . - . ID=Physo129909.5;Parent=Physo129909;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . exon 675183 675282 . - . ID=Physo129909.4;Parent=Physo129909;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . exon 675348 675533 . - . ID=Physo129909.3;Parent=Physo129909;constitutive=1;rank=3 scaffold_9 . exon 675601 675666 . - . ID=Physo129909.2;Parent=Physo129909;constitutive=1;rank=2 scaffold_9 . exon 675730 676632 . - . ID=Physo129909.1;Parent=Physo129909;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 678796 681120 . - . ID=Physo129911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90188;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 678796 681120 . - . ID=Physo129911;Parent=Physo129911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 678796 680913 . - . ID=Physo129911.2;Parent=Physo129911;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_9 . CDS 678924 680913 . - 0 ID=Physo129911;Parent=Physo129911;rank=2 scaffold_9 . CDS 681026 681120 . - 0 ID=Physo129911;Parent=Physo129911;rank=1 scaffold_9 . exon 681026 681120 . - . ID=Physo129911.1;Parent=Physo129911;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 682407 683789 . + . ID=Physo129912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90189;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 682407 683789 . + . ID=Physo129912;Parent=Physo129912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 682407 682672 . + 0 ID=Physo129912;Parent=Physo129912;rank=1 scaffold_9 . exon 682407 682672 . + . ID=Physo129912.1;Parent=Physo129912;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 682832 682874 . + 0 ID=Physo129912;Parent=Physo129912;rank=2 scaffold_9 . exon 682832 682874 . + . ID=Physo129912.2;Parent=Physo129912;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 682961 683063 . + 0 ID=Physo129912;Parent=Physo129912;rank=3 scaffold_9 . exon 682961 683063 . + . ID=Physo129912.3;Parent=Physo129912;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 683126 683169 . + 0 ID=Physo129912;Parent=Physo129912;rank=4 scaffold_9 . exon 683126 683169 . + . ID=Physo129912.4;Parent=Physo129912;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 683242 683301 . + 0 ID=Physo129912;Parent=Physo129912;rank=5 scaffold_9 . exon 683242 683301 . + . ID=Physo129912.5;Parent=Physo129912;constitutive=1;rank=5 scaffold_9 . CDS 683369 683470 . + 0 ID=Physo129912;Parent=Physo129912;rank=6 scaffold_9 . exon 683369 683470 . + . ID=Physo129912.6;Parent=Physo129912;constitutive=1;rank=6 scaffold_9 . CDS 683537 683662 . + 0 ID=Physo129912;Parent=Physo129912;rank=7 scaffold_9 . exon 683537 683789 . + . ID=Physo129912.7;Parent=Physo129912;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_9 ensembl protein_coding_gene 683987 684916 . + . ID=Physo129913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90190;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 683987 684916 . + . ID=Physo129913;Parent=Physo129913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 683987 684916 . + 0 ID=Physo129913;Parent=Physo129913;rank=1 scaffold_9 . exon 683987 684916 . + . ID=Physo129913.1;Parent=Physo129913;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 676796 678762 . + . ID=Physo155906;biotype=protein_coding;external_name=C_scaffold_9000086;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 676796 678762 . + . ID=Physo155906;Parent=Physo155906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 676796 676965 . + . ID=Physo155906.1;Parent=Physo155906;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 676797 676965 . + 0 ID=Physo155906;Parent=Physo155906;rank=1 scaffold_9 . CDS 677069 677190 . + 0 ID=Physo155906;Parent=Physo155906;rank=2 scaffold_9 . exon 677069 677190 . + . ID=Physo155906.2;Parent=Physo155906;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 677274 677471 . + 0 ID=Physo155906;Parent=Physo155906;rank=3 scaffold_9 . exon 677274 677471 . + . ID=Physo155906.3;Parent=Physo155906;constitutive=1;rank=3 scaffold_9 . CDS 677528 677591 . + 0 ID=Physo155906;Parent=Physo155906;rank=4 scaffold_9 . exon 677528 677591 . + . ID=Physo155906.4;Parent=Physo155906;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . CDS 677847 677928 . + 0 ID=Physo155906;Parent=Physo155906;rank=5 scaffold_9 . exon 677847 677928 . + . ID=Physo155906.5;Parent=Physo155906;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_9 . CDS 678005 678243 . + 0 ID=Physo155906;Parent=Physo155906;rank=6 scaffold_9 . exon 678005 678243 . + . ID=Physo155906.6;Parent=Physo155906;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 678529 678584 . + 0 ID=Physo155906;Parent=Physo155906;rank=7 scaffold_9 . exon 678529 678584 . + . ID=Physo155906.7;Parent=Physo155906;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 678679 678762 . + 0 ID=Physo155906;Parent=Physo155906;rank=8 scaffold_9 . exon 678679 678762 . + . ID=Physo155906.8;Parent=Physo155906;constitutive=1;rank=8 scaffold_9 . biological_region 684447 684447 0.999 - . logic_name=eponine scaffold_9 . biological_region 690005 690005 0.999 - . logic_name=eponine scaffold_9 . repeat_region 691171 691179 . ? . description=dust scaffold_9 ensembl protein_coding_gene 689428 690141 . - . ID=Physo108426;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90022;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 689428 690141 . - . ID=Physo108426;Parent=Physo108426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 689428 690141 . - . ID=Physo108426.1;Parent=Physo108426;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 689470 690099 . - 0 ID=Physo108426;Parent=Physo108426;rank=1 scaffold_9 ensembl protein_coding_gene 691571 692450 . - . ID=Physo108427;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90023;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 691571 692450 . - . ID=Physo108427;Parent=Physo108427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 691571 691935 . - 0 ID=Physo108427;Parent=Physo108427;rank=4 scaffold_9 . exon 691571 691935 . - . ID=Physo108427.4;Parent=Physo108427;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 691971 691972 . - 0 ID=Physo108427;Parent=Physo108427;rank=3 scaffold_9 . exon 691971 691972 . - . ID=Physo108427.3;Parent=Physo108427;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 692020 692127 . - 0 ID=Physo108427;Parent=Physo108427;rank=2 scaffold_9 . exon 692020 692127 . - . ID=Physo108427.2;Parent=Physo108427;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 692212 692450 . - 0 ID=Physo108427;Parent=Physo108427;rank=1 scaffold_9 . exon 692212 692450 . - . ID=Physo108427.1;Parent=Physo108427;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 692724 694291 . + . ID=Physo108428;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90024;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 692724 694291 . + . ID=Physo108428;Parent=Physo108428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 692724 693063 . + 0 ID=Physo108428;Parent=Physo108428;rank=1 scaffold_9 . exon 692724 693063 . + . ID=Physo108428.1;Parent=Physo108428;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 693142 693238 . + 0 ID=Physo108428;Parent=Physo108428;rank=2 scaffold_9 . exon 693142 693238 . + . ID=Physo108428.2;Parent=Physo108428;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 693313 693435 . + 0 ID=Physo108428;Parent=Physo108428;rank=3 scaffold_9 . exon 693313 693435 . + . ID=Physo108428.3;Parent=Physo108428;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . CDS 693509 693598 . + 0 ID=Physo108428;Parent=Physo108428;rank=4 scaffold_9 . exon 693509 693598 . + . ID=Physo108428.4;Parent=Physo108428;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_9 . CDS 693687 693762 . + 0 ID=Physo108428;Parent=Physo108428;rank=5 scaffold_9 . exon 693687 693762 . + . ID=Physo108428.5;Parent=Physo108428;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 693846 693915 . + 0 ID=Physo108428;Parent=Physo108428;rank=6 scaffold_9 . exon 693846 693915 . + . ID=Physo108428.6;Parent=Physo108428;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_9 . CDS 694005 694179 . + 0 ID=Physo108428;Parent=Physo108428;rank=7 scaffold_9 . exon 694005 694179 . + . ID=Physo108428.7;Parent=Physo108428;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_9 . CDS 694249 694291 . + 0 ID=Physo108428;Parent=Physo108428;rank=8 scaffold_9 ensembl protein_coding_gene 685129 686078 . + . ID=Physo129914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90191;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 685129 686078 . + . ID=Physo129914;Parent=Physo129914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 685129 686078 . + . ID=Physo129914.1;Parent=Physo129914;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 685140 685970 . + 0 ID=Physo129914;Parent=Physo129914;rank=1 scaffold_9 ensembl protein_coding_gene 688076 689295 . + . ID=Physo129915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90192;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 688076 689295 . + . ID=Physo129915;Parent=Physo129915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 688076 688267 . + 0 ID=Physo129915;Parent=Physo129915;rank=1 scaffold_9 . exon 688076 688267 . + . ID=Physo129915.1;Parent=Physo129915;constitutive=1;rank=1 scaffold_9 . CDS 688360 688605 . + 0 ID=Physo129915;Parent=Physo129915;rank=2 scaffold_9 . exon 688360 688605 . + . ID=Physo129915.2;Parent=Physo129915;constitutive=1;rank=2 scaffold_9 . CDS 688689 688790 . + 0 ID=Physo129915;Parent=Physo129915;rank=3 scaffold_9 . exon 688689 688790 . + . ID=Physo129915.3;Parent=Physo129915;constitutive=1;rank=3 scaffold_9 . CDS 688864 689295 . + 0 ID=Physo129915;Parent=Physo129915;rank=4 scaffold_9 . exon 688864 689295 . + . ID=Physo129915.4;Parent=Physo129915;constitutive=1;rank=4 scaffold_9 ensembl protein_coding_gene 690399 691452 . + . ID=Physo129917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90194;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 690399 691452 . + . ID=Physo129917;Parent=Physo129917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 690399 690498 . + 0 ID=Physo129917;Parent=Physo129917;rank=1 scaffold_9 . exon 690399 690498 . + . ID=Physo129917.1;Parent=Physo129917;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 690574 690632 . + 0 ID=Physo129917;Parent=Physo129917;rank=2 scaffold_9 . exon 690574 690632 . + . ID=Physo129917.2;Parent=Physo129917;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 690723 690893 . + 0 ID=Physo129917;Parent=Physo129917;rank=3 scaffold_9 . exon 690723 690893 . + . ID=Physo129917.3;Parent=Physo129917;constitutive=1;rank=3 scaffold_9 . CDS 690969 691012 . + 0 ID=Physo129917;Parent=Physo129917;rank=4 scaffold_9 . exon 690969 691012 . + . ID=Physo129917.4;Parent=Physo129917;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 691091 691155 . + 0 ID=Physo129917;Parent=Physo129917;rank=5 scaffold_9 . exon 691091 691155 . + . ID=Physo129917.5;Parent=Physo129917;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 691232 691452 . + 0 ID=Physo129917;Parent=Physo129917;rank=6 scaffold_9 . exon 691232 691452 . + . ID=Physo129917.6;Parent=Physo129917;constitutive=1;ensembl_phase=1;rank=6 scaffold_9 . exon 694249 694291 . + . ID=Physo108428.8;Parent=Physo108428;constitutive=1;ensembl_phase=2;rank=8 scaffold_9 . biological_region 710100 710103 0.999 + . logic_name=eponine scaffold_9 . biological_region 710107 710111 0.999 + . logic_name=eponine scaffold_9 . biological_region 712333 712338 0.999 + . logic_name=eponine scaffold_9 . biological_region 712393 712399 0.999 - . logic_name=eponine scaffold_9 . biological_region 712504 712513 0.999 - . logic_name=eponine scaffold_9 . repeat_region 712683 712713 . ? . description=dust scaffold_9 . repeat_region 712729 712736 . ? . description=dust scaffold_9 ensembl protein_coding_gene 704343 705080 . + . ID=Physo129920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90197;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 704343 705080 . + . ID=Physo129920;Parent=Physo129920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 704343 705080 . + 0 ID=Physo129920;Parent=Physo129920;rank=1 scaffold_9 . exon 704343 705080 . + . ID=Physo129920.1;Parent=Physo129920;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 706792 707655 . - . ID=Physo129922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90199;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 706792 707655 . - . ID=Physo129922;Parent=Physo129922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 706792 707655 . - 0 ID=Physo129922;Parent=Physo129922;rank=1 scaffold_9 . exon 706792 707655 . - . ID=Physo129922.1;Parent=Physo129922;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 708096 709568 . - . ID=Physo129923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90200;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 708096 709568 . - . ID=Physo129923;Parent=Physo129923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 708096 708441 . - 0 ID=Physo129923;Parent=Physo129923;rank=2 scaffold_9 . exon 708096 708441 . - . ID=Physo129923.2;Parent=Physo129923;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 708577 709568 . - 0 ID=Physo129923;Parent=Physo129923;rank=1 scaffold_9 . exon 708577 709568 . - . ID=Physo129923.1;Parent=Physo129923;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 710466 711370 . + . ID=Physo129924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90201;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 710466 711370 . + . ID=Physo129924;Parent=Physo129924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 710466 711370 . + . ID=Physo129924.1;Parent=Physo129924;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 710510 711370 . + 0 ID=Physo129924;Parent=Physo129924;rank=1 scaffold_9 ensembl protein_coding_gene 712328 713292 . + . ID=Physo129925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90202;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 712328 713292 . + . ID=Physo129925;Parent=Physo129925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 712328 712491 . + 0 ID=Physo129925;Parent=Physo129925;rank=1 scaffold_9 . exon 712328 712491 . + . ID=Physo129925.1;Parent=Physo129925;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 712618 712644 . + 0 ID=Physo129925;Parent=Physo129925;rank=2 scaffold_9 . exon 712618 712644 . + . ID=Physo129925.2;Parent=Physo129925;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 712774 712852 . + 0 ID=Physo129925;Parent=Physo129925;rank=3 scaffold_9 . exon 712774 712852 . + . ID=Physo129925.3;Parent=Physo129925;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 712933 713244 . + 0 ID=Physo129925;Parent=Physo129925;rank=4 scaffold_9 . exon 712933 713244 . + . ID=Physo129925.4;Parent=Physo129925;constitutive=1;rank=4 scaffold_9 . CDS 713275 713292 . + 0 ID=Physo129925;Parent=Physo129925;rank=5 scaffold_9 . exon 713275 713292 . + . ID=Physo129925.5;Parent=Physo129925;constitutive=1;rank=5 scaffold_9 ensembl protein_coding_gene 705179 706613 . + . ID=Physo155908;biotype=protein_coding;external_name=C_scaffold_9000088;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 705179 706613 . + . ID=Physo155908;Parent=Physo155908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 705179 705612 . + 0 ID=Physo155908;Parent=Physo155908;rank=1 scaffold_9 . exon 705179 705612 . + . ID=Physo155908.1;Parent=Physo155908;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 705691 705838 . + 0 ID=Physo155908;Parent=Physo155908;rank=2 scaffold_9 . exon 705691 705838 . + . ID=Physo155908.2;Parent=Physo155908;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 705904 705988 . + 0 ID=Physo155908;Parent=Physo155908;rank=3 scaffold_9 . exon 705904 705988 . + . ID=Physo155908.3;Parent=Physo155908;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 706106 706305 . + 0 ID=Physo155908;Parent=Physo155908;rank=4 scaffold_9 . exon 706106 706305 . + . ID=Physo155908.4;Parent=Physo155908;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 706494 706613 . + 0 ID=Physo155908;Parent=Physo155908;rank=5 scaffold_9 . exon 706494 706613 . + . ID=Physo155908.5;Parent=Physo155908;constitutive=1;rank=5 scaffold_9 ensembl protein_coding_gene 714575 715767 . - . ID=Physo129926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90203;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 714575 715767 . - . ID=Physo129926;Parent=Physo129926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 714575 714844 . - . ID=Physo129926.3;Parent=Physo129926;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_9 . CDS 714731 714844 . - 0 ID=Physo129926;Parent=Physo129926;rank=3 scaffold_9 . CDS 714929 715001 . - 0 ID=Physo129926;Parent=Physo129926;rank=2 scaffold_9 . exon 714929 715001 . - . ID=Physo129926.2;Parent=Physo129926;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 715085 715737 . - 0 ID=Physo129926;Parent=Physo129926;rank=1 scaffold_9 . exon 715085 715767 . - . ID=Physo129926.1;Parent=Physo129926;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 716256 719440 . + . ID=Physo129927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90204;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 716256 719440 . + . ID=Physo129927;Parent=Physo129927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 716256 717421 . + 0 ID=Physo129927;Parent=Physo129927;rank=1 scaffold_9 . exon 716256 717421 . + . ID=Physo129927.1;Parent=Physo129927;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 717646 717907 . + 0 ID=Physo129927;Parent=Physo129927;rank=2 scaffold_9 . exon 717646 717907 . + . ID=Physo129927.2;Parent=Physo129927;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 717982 718085 . + 0 ID=Physo129927;Parent=Physo129927;rank=3 scaffold_9 . exon 717982 718085 . + . ID=Physo129927.3;Parent=Physo129927;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 718167 718350 . + 0 ID=Physo129927;Parent=Physo129927;rank=4 scaffold_9 . exon 718167 718350 . + . ID=Physo129927.4;Parent=Physo129927;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 718421 718488 . + 0 ID=Physo129927;Parent=Physo129927;rank=5 scaffold_9 . exon 718421 718488 . + . ID=Physo129927.5;Parent=Physo129927;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 718562 718801 . + 0 ID=Physo129927;Parent=Physo129927;rank=6 scaffold_9 . exon 718562 718801 . + . ID=Physo129927.6;Parent=Physo129927;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_9 . CDS 718873 719440 . + 0 ID=Physo129927;Parent=Physo129927;rank=7 scaffold_9 . exon 718873 719440 . + . ID=Physo129927.7;Parent=Physo129927;constitutive=1;ensembl_phase=2;rank=7 scaffold_9 . repeat_region 724847 724865 . ? . description=dust scaffold_9 . repeat_region 730986 731006 . ? . description=trf scaffold_9 ensembl protein_coding_gene 724880 728071 . - . ID=Physo129928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90205;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 724880 728071 . - . ID=Physo129928;Parent=Physo129928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 724880 728071 . - 0 ID=Physo129928;Parent=Physo129928;rank=1 scaffold_9 . exon 724880 728071 . - . ID=Physo129928.1;Parent=Physo129928;constitutive=1;rank=1 scaffold_9 . biological_region 736317 736321 0.999 + . logic_name=eponine scaffold_9 . biological_region 742859 742862 0.999 - . logic_name=eponine scaffold_9 . biological_region 742891 742898 0.999 - . logic_name=eponine scaffold_9 . biological_region 742946 742951 0.999 + . logic_name=eponine scaffold_9 . biological_region 743330 743330 0.999 - . logic_name=eponine scaffold_9 . biological_region 743383 743388 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 735126 736485 . - . ID=Physo129929;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90206;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 735126 736485 . - . ID=Physo129929;Parent=Physo129929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 735126 735801 . - 0 ID=Physo129929;Parent=Physo129929;rank=4 scaffold_9 . exon 735126 735801 . - . ID=Physo129929.4;Parent=Physo129929;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 735882 736012 . - 0 ID=Physo129929;Parent=Physo129929;rank=3 scaffold_9 . exon 735882 736012 . - . ID=Physo129929.3;Parent=Physo129929;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 736096 736198 . - 0 ID=Physo129929;Parent=Physo129929;rank=2 scaffold_9 . exon 736096 736198 . - . ID=Physo129929.2;Parent=Physo129929;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 736262 736485 . - 0 ID=Physo129929;Parent=Physo129929;rank=1 scaffold_9 . exon 736262 736485 . - . ID=Physo129929.1;Parent=Physo129929;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 738437 739467 . - . ID=Physo129931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90208;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 738437 739467 . - . ID=Physo129931;Parent=Physo129931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 738437 739420 . - 0 ID=Physo129931;Parent=Physo129931;rank=1 scaffold_9 . exon 738437 739467 . - . ID=Physo129931.1;Parent=Physo129931;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 739810 741747 . + . ID=Physo129932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90209;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 739810 741747 . + . ID=Physo129932;Parent=Physo129932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 739810 741747 . + 0 ID=Physo129932;Parent=Physo129932;rank=1 scaffold_9 . exon 739810 741747 . + . ID=Physo129932.1;Parent=Physo129932;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 737231 738370 . + . ID=Physo155912;biotype=protein_coding;external_name=C_scaffold_9000092;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 737231 738370 . + . ID=Physo155912;Parent=Physo155912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 737231 738203 . + 0 ID=Physo155912;Parent=Physo155912;rank=1 scaffold_9 . exon 737231 738203 . + . ID=Physo155912.1;Parent=Physo155912;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 738234 738370 . + 0 ID=Physo155912;Parent=Physo155912;rank=2 scaffold_9 . exon 738234 738370 . + . ID=Physo155912.2;Parent=Physo155912;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 ensembl protein_coding_gene 744112 747201 . + . ID=Physo108429;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90025;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 744112 747201 . + . ID=Physo108429;Parent=Physo108429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 744112 746298 . + 0 ID=Physo108429;Parent=Physo108429;rank=1 scaffold_9 . exon 744112 746298 . + . ID=Physo108429.1;Parent=Physo108429;constitutive=1;rank=1 scaffold_9 . CDS 747166 747201 . + 0 ID=Physo108429;Parent=Physo108429;rank=2 scaffold_9 . exon 747166 747201 . + . ID=Physo108429.2;Parent=Physo108429;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 749164 750500 . + . ID=Physo129934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90211;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 749164 750500 . + . ID=Physo129934;Parent=Physo129934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 749164 749475 . + 0 ID=Physo129934;Parent=Physo129934;rank=1 scaffold_9 . exon 749164 749475 . + . ID=Physo129934.1;Parent=Physo129934;constitutive=1;rank=1 scaffold_9 . CDS 749548 749658 . + 0 ID=Physo129934;Parent=Physo129934;rank=2 scaffold_9 . exon 749548 749658 . + . ID=Physo129934.2;Parent=Physo129934;constitutive=1;rank=2 scaffold_9 . CDS 749766 750500 . + 0 ID=Physo129934;Parent=Physo129934;rank=3 scaffold_9 . exon 749766 750500 . + . ID=Physo129934.3;Parent=Physo129934;constitutive=1;rank=3 scaffold_9 ensembl protein_coding_gene 751162 752467 . + . ID=Physo129935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90212;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 751162 752467 . + . ID=Physo129935;Parent=Physo129935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 751162 751428 . + 0 ID=Physo129935;Parent=Physo129935;rank=1 scaffold_9 . exon 751162 751428 . + . ID=Physo129935.1;Parent=Physo129935;constitutive=1;rank=1 scaffold_9 . CDS 751513 751623 . + 0 ID=Physo129935;Parent=Physo129935;rank=2 scaffold_9 . exon 751513 751623 . + . ID=Physo129935.2;Parent=Physo129935;constitutive=1;rank=2 scaffold_9 . CDS 751733 752467 . + 0 ID=Physo129935;Parent=Physo129935;rank=3 scaffold_9 . exon 751733 752467 . + . ID=Physo129935.3;Parent=Physo129935;constitutive=1;rank=3 scaffold_9 ensembl protein_coding_gene 753361 755604 . + . ID=Physo129936;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90213;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 753361 755604 . + . ID=Physo129936;Parent=Physo129936;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 753361 754764 . + 0 ID=Physo129936;Parent=Physo129936;rank=1 scaffold_9 . exon 753361 754764 . + . ID=Physo129936.1;Parent=Physo129936;constitutive=1;rank=1 scaffold_9 . CDS 754851 755013 . + 0 ID=Physo129936;Parent=Physo129936;rank=2 scaffold_9 . CDS 755079 755559 . + 0 ID=Physo129936;Parent=Physo129936;rank=3 scaffold_9 . CDS 755601 755604 . + 0 ID=Physo129936;Parent=Physo129936;rank=4 scaffold_9 . biological_region 754102 754107 0.999 + . logic_name=eponine scaffold_9 . biological_region 754214 754219 0.999 + . logic_name=eponine scaffold_9 . exon 754851 755013 . + . ID=Physo129936.2;Parent=Physo129936;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . exon 755079 755559 . + . ID=Physo129936.3;Parent=Physo129936;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . exon 755601 755604 . + . ID=Physo129936.4;Parent=Physo129936;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 ensembl protein_coding_gene 755849 757354 . - . ID=Physo129937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90214;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 755849 757354 . - . ID=Physo129937;Parent=Physo129937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 755849 756786 . - 0 ID=Physo129937;Parent=Physo129937;rank=3 scaffold_9 . exon 755849 756786 . - . ID=Physo129937.3;Parent=Physo129937;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 756858 756960 . - 0 ID=Physo129937;Parent=Physo129937;rank=2 scaffold_9 . exon 756858 756960 . - . ID=Physo129937.2;Parent=Physo129937;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 757034 757354 . - 0 ID=Physo129937;Parent=Physo129937;rank=1 scaffold_9 . exon 757034 757354 . - . ID=Physo129937.1;Parent=Physo129937;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 758206 759603 . + . ID=Physo129938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90215;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 758206 759603 . + . ID=Physo129938;Parent=Physo129938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 758206 759105 . + 0 ID=Physo129938;Parent=Physo129938;rank=1 scaffold_9 . exon 758206 759105 . + . ID=Physo129938.1;Parent=Physo129938;constitutive=1;rank=1 scaffold_9 . CDS 759292 759603 . + 0 ID=Physo129938;Parent=Physo129938;rank=2 scaffold_9 . exon 759292 759603 . + . ID=Physo129938.2;Parent=Physo129938;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 759695 761467 . - . ID=Physo129939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90216;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 759695 761467 . - . ID=Physo129939;Parent=Physo129939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 759695 759952 . - 0 ID=Physo129939;Parent=Physo129939;rank=3 scaffold_9 . exon 759695 759952 . - . ID=Physo129939.3;Parent=Physo129939;constitutive=1;rank=3 scaffold_9 . CDS 760028 761050 . - 0 ID=Physo129939;Parent=Physo129939;rank=2 scaffold_9 . exon 760028 761050 . - . ID=Physo129939.2;Parent=Physo129939;constitutive=1;rank=2 scaffold_9 . CDS 761090 761467 . - 0 ID=Physo129939;Parent=Physo129939;rank=1 scaffold_9 . exon 761090 761467 . - . ID=Physo129939.1;Parent=Physo129939;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 761717 763531 . + . ID=Physo129940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90217;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 761717 763531 . + . ID=Physo129940;Parent=Physo129940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 761717 761788 . + 0 ID=Physo129940;Parent=Physo129940;rank=1 scaffold_9 . exon 761717 761788 . + . ID=Physo129940.1;Parent=Physo129940;constitutive=1;rank=1 scaffold_9 . CDS 761859 761939 . + 0 ID=Physo129940;Parent=Physo129940;rank=2 scaffold_9 . exon 761859 761939 . + . ID=Physo129940.2;Parent=Physo129940;constitutive=1;rank=2 scaffold_9 . CDS 762007 762172 . + 0 ID=Physo129940;Parent=Physo129940;rank=3 scaffold_9 . exon 762007 762172 . + . ID=Physo129940.3;Parent=Physo129940;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 762255 762636 . + 0 ID=Physo129940;Parent=Physo129940;rank=4 scaffold_9 . exon 762255 762636 . + . ID=Physo129940.4;Parent=Physo129940;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_9 . CDS 762703 762863 . + 0 ID=Physo129940;Parent=Physo129940;rank=5 scaffold_9 . exon 762703 762863 . + . ID=Physo129940.5;Parent=Physo129940;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 762926 763440 . + 0 ID=Physo129940;Parent=Physo129940;rank=6 scaffold_9 . exon 762926 763531 . + . ID=Physo129940.6;Parent=Physo129940;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_9 . repeat_region 763602 763771 . + . description=(TCG)n scaffold_9 . repeat_region 763685 763730 . ? . description=trf scaffold_9 . repeat_region 763690 763718 . ? . description=trf scaffold_9 . repeat_region 769347 769396 . ? . description=dust scaffold_9 . repeat_region 769361 769384 . ? . description=trf scaffold_9 . repeat_region 771204 771243 . ? . description=trf scaffold_9 ensembl protein_coding_gene 771544 772731 . + . ID=Physo112381;biotype=protein_coding;external_name=estExt_Genewise1.C_90159;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 771544 772731 . + . ID=Physo112381;Parent=Physo112381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 771544 772079 . + . ID=Physo112381.1;Parent=Physo112381;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 771573 771830 . + 0 ID=Physo112381;Parent=Physo112381;rank=1 scaffold_9 . exon 772476 772731 . + . ID=Physo112381.2;Parent=Physo112381;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_9 ensembl protein_coding_gene 769398 771368 . + . ID=Physo129943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90220;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 769398 771368 . + . ID=Physo129943;Parent=Physo129943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 769398 769573 . + 0 ID=Physo129943;Parent=Physo129943;rank=1 scaffold_9 . exon 769398 769573 . + . ID=Physo129943.1;Parent=Physo129943;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 769660 769864 . + 0 ID=Physo129943;Parent=Physo129943;rank=2 scaffold_9 . exon 769660 769864 . + . ID=Physo129943.2;Parent=Physo129943;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 769943 770111 . + 0 ID=Physo129943;Parent=Physo129943;rank=3 scaffold_9 . exon 769943 770111 . + . ID=Physo129943.3;Parent=Physo129943;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 770203 771341 . + 0 ID=Physo129943;Parent=Physo129943;rank=4 scaffold_9 . exon 770203 771368 . + . ID=Physo129943.4;Parent=Physo129943;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 773427 779308 . - . ID=Physo129945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90222;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 773427 779308 . - . ID=Physo129945;Parent=Physo129945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 773427 773788 . - . ID=Physo129945.4;Parent=Physo129945;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_9 . CDS 773574 773788 . - 0 ID=Physo129945;Parent=Physo129945;rank=4 scaffold_9 . CDS 773866 775818 . - 0 ID=Physo129945;Parent=Physo129945;rank=3 scaffold_9 . CDS 775873 778720 . - 0 ID=Physo129945;Parent=Physo129945;rank=2 scaffold_9 . CDS 778799 779308 . - 0 ID=Physo129945;Parent=Physo129945;rank=1 scaffold_9 ensembl protein_coding_gene 763590 766249 . - . ID=Physo155919;biotype=protein_coding;external_name=C_scaffold_9000099;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 763590 766249 . - . ID=Physo155919;Parent=Physo155919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 763590 764025 . - 0 ID=Physo155919;Parent=Physo155919;rank=11 scaffold_9 . exon 763590 764025 . - . ID=Physo155919.11;Parent=Physo155919;constitutive=1;ensembl_phase=2;rank=11 scaffold_9 . CDS 764106 764184 . - 0 ID=Physo155919;Parent=Physo155919;rank=10 scaffold_9 . exon 764106 764184 . - . ID=Physo155919.10;Parent=Physo155919;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_9 . CDS 764364 764402 . - 0 ID=Physo155919;Parent=Physo155919;rank=9 scaffold_9 . exon 764364 764402 . - . ID=Physo155919.9;Parent=Physo155919;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_9 . CDS 764767 764867 . - 0 ID=Physo155919;Parent=Physo155919;rank=8 scaffold_9 . exon 764767 764867 . - . ID=Physo155919.8;Parent=Physo155919;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_9 . CDS 765018 765085 . - 0 ID=Physo155919;Parent=Physo155919;rank=7 scaffold_9 . exon 765018 765085 . - . ID=Physo155919.7;Parent=Physo155919;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_9 . CDS 765157 765264 . - 0 ID=Physo155919;Parent=Physo155919;rank=6 scaffold_9 . exon 765157 765264 . - . ID=Physo155919.6;Parent=Physo155919;constitutive=1;rank=6 scaffold_9 . CDS 765328 765463 . - 0 ID=Physo155919;Parent=Physo155919;rank=5 scaffold_9 . exon 765328 765463 . - . ID=Physo155919.5;Parent=Physo155919;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 765535 765629 . - 0 ID=Physo155919;Parent=Physo155919;rank=4 scaffold_9 . exon 765535 765629 . - . ID=Physo155919.4;Parent=Physo155919;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 765713 765785 . - 0 ID=Physo155919;Parent=Physo155919;rank=3 scaffold_9 . exon 765713 765785 . - . ID=Physo155919.3;Parent=Physo155919;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 765875 765945 . - 0 ID=Physo155919;Parent=Physo155919;rank=2 scaffold_9 . exon 765875 765945 . - . ID=Physo155919.2;Parent=Physo155919;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 766043 766249 . - 0 ID=Physo155919;Parent=Physo155919;rank=1 scaffold_9 . exon 766043 766249 . - . ID=Physo155919.1;Parent=Physo155919;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 767193 768014 . + . ID=Physo155920;biotype=protein_coding;external_name=C_scaffold_9000100;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 767193 768014 . + . ID=Physo155920;Parent=Physo155920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 767193 767222 . + 0 ID=Physo155920;Parent=Physo155920;rank=1 scaffold_9 . exon 767193 767222 . + . ID=Physo155920.1;Parent=Physo155920;constitutive=1;rank=1 scaffold_9 . CDS 767307 768014 . + 0 ID=Physo155920;Parent=Physo155920;rank=2 scaffold_9 . exon 767307 768014 . + . ID=Physo155920.2;Parent=Physo155920;constitutive=1;rank=2 scaffold_9 . biological_region 775816 775819 0.999 - . logic_name=eponine scaffold_9 . biological_region 775874 775877 0.999 + . logic_name=eponine scaffold_9 . biological_region 776265 776266 0.999 + . logic_name=eponine scaffold_9 . biological_region 780591 780593 0.999 - . logic_name=eponine scaffold_9 . exon 773866 775818 . - . ID=Physo129945.3;Parent=Physo129945;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . exon 775873 778720 . - . ID=Physo129945.2;Parent=Physo129945;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . exon 778799 779308 . - . ID=Physo129945.1;Parent=Physo129945;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 779846 781224 . + . ID=Physo129946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90223;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 779846 781224 . + . ID=Physo129946;Parent=Physo129946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 779846 780073 . + 0 ID=Physo129946;Parent=Physo129946;rank=1 scaffold_9 . exon 779846 780073 . + . ID=Physo129946.1;Parent=Physo129946;constitutive=1;rank=1 scaffold_9 . CDS 780154 781224 . + 0 ID=Physo129946;Parent=Physo129946;rank=2 scaffold_9 . exon 780154 781224 . + . ID=Physo129946.2;Parent=Physo129946;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 781313 783157 . - . ID=Physo155923;biotype=protein_coding;external_name=C_scaffold_9000103;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 781313 783157 . - . ID=Physo155923;Parent=Physo155923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 781313 781479 . - 0 ID=Physo155923;Parent=Physo155923;rank=8 scaffold_9 . exon 781313 781479 . - . ID=Physo155923.8;Parent=Physo155923;constitutive=1;ensembl_phase=1;rank=8 scaffold_9 . CDS 781546 781686 . - 0 ID=Physo155923;Parent=Physo155923;rank=7 scaffold_9 . exon 781546 781686 . - . ID=Physo155923.7;Parent=Physo155923;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 781759 781904 . - 0 ID=Physo155923;Parent=Physo155923;rank=6 scaffold_9 . exon 781759 781904 . - . ID=Physo155923.6;Parent=Physo155923;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 782010 782234 . - 0 ID=Physo155923;Parent=Physo155923;rank=5 scaffold_9 . exon 782010 782234 . - . ID=Physo155923.5;Parent=Physo155923;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_9 . CDS 782283 782410 . - 0 ID=Physo155923;Parent=Physo155923;rank=4 scaffold_9 . exon 782283 782410 . - . ID=Physo155923.4;Parent=Physo155923;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 782482 782565 . - 0 ID=Physo155923;Parent=Physo155923;rank=3 scaffold_9 . exon 782482 782565 . - . ID=Physo155923.3;Parent=Physo155923;constitutive=1;rank=3 scaffold_9 . CDS 782810 782931 . - 0 ID=Physo155923;Parent=Physo155923;rank=2 scaffold_9 . exon 782810 782931 . - . ID=Physo155923.2;Parent=Physo155923;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 782998 783157 . - 0 ID=Physo155923;Parent=Physo155923;rank=1 scaffold_9 . exon 782998 783157 . - . ID=Physo155923.1;Parent=Physo155923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . repeat_region 785785 785805 . ? . description=dust scaffold_9 ensembl protein_coding_gene 788703 789990 . - . ID=Physo108431;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90027;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 788703 789990 . - . ID=Physo108431;Parent=Physo108431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 788703 789990 . - . ID=Physo108431.1;Parent=Physo108431;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 788753 789988 . - 0 ID=Physo108431;Parent=Physo108431;rank=1 scaffold_9 ensembl protein_coding_gene 790883 792813 . - . ID=Physo108432;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90028;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 790883 792813 . - . ID=Physo108432;Parent=Physo108432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 790883 791303 . - . ID=Physo108432.9;Parent=Physo108432;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=9 scaffold_9 . CDS 790964 791303 . - 0 ID=Physo108432;Parent=Physo108432;rank=9 scaffold_9 . CDS 791371 791437 . - 0 ID=Physo108432;Parent=Physo108432;rank=8 scaffold_9 . exon 791371 791437 . - . ID=Physo108432.8;Parent=Physo108432;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_9 . CDS 791515 791578 . - 0 ID=Physo108432;Parent=Physo108432;rank=7 scaffold_9 . exon 791515 791578 . - . ID=Physo108432.7;Parent=Physo108432;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_9 . CDS 791648 791779 . - 0 ID=Physo108432;Parent=Physo108432;rank=6 scaffold_9 . exon 791648 791779 . - . ID=Physo108432.6;Parent=Physo108432;constitutive=1;rank=6 scaffold_9 . CDS 791853 791997 . - 0 ID=Physo108432;Parent=Physo108432;rank=5 scaffold_9 . exon 791853 791997 . - . ID=Physo108432.5;Parent=Physo108432;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 792065 792144 . - 0 ID=Physo108432;Parent=Physo108432;rank=4 scaffold_9 . exon 792065 792144 . - . ID=Physo108432.4;Parent=Physo108432;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 792218 792310 . - 0 ID=Physo108432;Parent=Physo108432;rank=3 scaffold_9 . exon 792218 792310 . - . ID=Physo108432.3;Parent=Physo108432;constitutive=1;rank=3 scaffold_9 . CDS 792381 792572 . - 0 ID=Physo108432;Parent=Physo108432;rank=2 scaffold_9 . exon 792381 792572 . - . ID=Physo108432.2;Parent=Physo108432;constitutive=1;rank=2 scaffold_9 . CDS 792646 792795 . - 0 ID=Physo108432;Parent=Physo108432;rank=1 scaffold_9 . exon 792646 792813 . - . ID=Physo108432.1;Parent=Physo108432;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 784114 784785 . - . ID=Physo129947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90224;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 784114 784785 . - . ID=Physo129947;Parent=Physo129947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 784114 784582 . - 0 ID=Physo129947;Parent=Physo129947;rank=2 scaffold_9 . exon 784114 784582 . - . ID=Physo129947.2;Parent=Physo129947;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 784676 784785 . - 0 ID=Physo129947;Parent=Physo129947;rank=1 scaffold_9 . exon 784676 784785 . - . ID=Physo129947.1;Parent=Physo129947;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 786680 788505 . - . ID=Physo129949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90226;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 786680 788505 . - . ID=Physo129949;Parent=Physo129949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 786680 787463 . - 0 ID=Physo129949;Parent=Physo129949;rank=4 scaffold_9 . exon 786680 787463 . - . ID=Physo129949.4;Parent=Physo129949;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 787533 787610 . - 0 ID=Physo129949;Parent=Physo129949;rank=3 scaffold_9 . exon 787533 787610 . - . ID=Physo129949.3;Parent=Physo129949;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . CDS 787701 787740 . - 0 ID=Physo129949;Parent=Physo129949;rank=2 scaffold_9 . exon 787701 787740 . - . ID=Physo129949.2;Parent=Physo129949;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 787821 788505 . - 0 ID=Physo129949;Parent=Physo129949;rank=1 scaffold_9 . exon 787821 788505 . - . ID=Physo129949.1;Parent=Physo129949;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 793200 794558 . - . ID=Physo129952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90229;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 793200 794558 . - . ID=Physo129952;Parent=Physo129952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 793200 793638 . - . ID=Physo129952.5;Parent=Physo129952;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_9 . CDS 793324 793638 . - 0 ID=Physo129952;Parent=Physo129952;rank=5 scaffold_9 . CDS 793709 793906 . - 0 ID=Physo129952;Parent=Physo129952;rank=4 scaffold_9 . CDS 794013 794125 . - 0 ID=Physo129952;Parent=Physo129952;rank=3 scaffold_9 . CDS 794213 794369 . - 0 ID=Physo129952;Parent=Physo129952;rank=2 scaffold_9 . CDS 794464 794520 . - 0 ID=Physo129952;Parent=Physo129952;rank=1 scaffold_9 . biological_region 793449 793451 0.999 + . logic_name=eponine scaffold_9 . biological_region 794285 794288 0.999 - . logic_name=eponine scaffold_9 . biological_region 794506 794509 0.999 + . logic_name=eponine scaffold_9 . repeat_region 799498 799533 . ? . description=trf scaffold_9 . repeat_region 799585 799620 . ? . description=trf scaffold_9 . biological_region 800736 800737 0.999 - . logic_name=eponine scaffold_9 . biological_region 800788 800793 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 796140 798101 . + . ID=Physo108433;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90029;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 796140 798101 . + . ID=Physo108433;Parent=Physo108433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 796140 796170 . + 0 ID=Physo108433;Parent=Physo108433;rank=1 scaffold_9 . exon 796140 796170 . + . ID=Physo108433.1;Parent=Physo108433;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 796320 796408 . + 0 ID=Physo108433;Parent=Physo108433;rank=2 scaffold_9 . exon 796320 796408 . + . ID=Physo108433.2;Parent=Physo108433;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 796484 796523 . + 0 ID=Physo108433;Parent=Physo108433;rank=3 scaffold_9 . exon 796484 796523 . + . ID=Physo108433.3;Parent=Physo108433;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 796612 796690 . + 0 ID=Physo108433;Parent=Physo108433;rank=4 scaffold_9 . exon 796612 796690 . + . ID=Physo108433.4;Parent=Physo108433;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_9 . CDS 796767 796863 . + 0 ID=Physo108433;Parent=Physo108433;rank=5 scaffold_9 . exon 796767 796863 . + . ID=Physo108433.5;Parent=Physo108433;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 796937 797197 . + 0 ID=Physo108433;Parent=Physo108433;rank=6 scaffold_9 . exon 796937 797197 . + . ID=Physo108433.6;Parent=Physo108433;constitutive=1;rank=6 scaffold_9 . CDS 797286 797513 . + 0 ID=Physo108433;Parent=Physo108433;rank=7 scaffold_9 . exon 797286 797513 . + . ID=Physo108433.7;Parent=Physo108433;constitutive=1;rank=7 scaffold_9 . CDS 797576 797653 . + 0 ID=Physo108433;Parent=Physo108433;rank=8 scaffold_9 . exon 797576 797653 . + . ID=Physo108433.8;Parent=Physo108433;constitutive=1;rank=8 scaffold_9 . CDS 797728 797802 . + 0 ID=Physo108433;Parent=Physo108433;rank=9 scaffold_9 . exon 797728 797802 . + . ID=Physo108433.9;Parent=Physo108433;constitutive=1;rank=9 scaffold_9 . CDS 797877 798101 . + 0 ID=Physo108433;Parent=Physo108433;rank=10 scaffold_9 . exon 797877 798101 . + . ID=Physo108433.10;Parent=Physo108433;constitutive=1;rank=10 scaffold_9 . exon 793709 793906 . - . ID=Physo129952.4;Parent=Physo129952;constitutive=1;rank=4 scaffold_9 . exon 794013 794125 . - . ID=Physo129952.3;Parent=Physo129952;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . exon 794213 794369 . - . ID=Physo129952.2;Parent=Physo129952;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . exon 794464 794558 . - . ID=Physo129952.1;Parent=Physo129952;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 798590 799825 . - . ID=Physo155925;biotype=protein_coding;external_name=C_scaffold_9000105;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 798590 799825 . - . ID=Physo155925;Parent=Physo155925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 798590 798641 . - 0 ID=Physo155925;Parent=Physo155925;rank=5 scaffold_9 . exon 798590 798641 . - . ID=Physo155925.5;Parent=Physo155925;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 798894 798959 . - 0 ID=Physo155925;Parent=Physo155925;rank=4 scaffold_9 . exon 798894 798959 . - . ID=Physo155925.4;Parent=Physo155925;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_9 . CDS 799022 799066 . - 0 ID=Physo155925;Parent=Physo155925;rank=3 scaffold_9 . exon 799022 799066 . - . ID=Physo155925.3;Parent=Physo155925;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . CDS 799153 799782 . - 0 ID=Physo155925;Parent=Physo155925;rank=2 scaffold_9 . exon 799153 799782 . - . ID=Physo155925.2;Parent=Physo155925;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 799803 799825 . - 0 ID=Physo155925;Parent=Physo155925;rank=1 scaffold_9 . exon 799803 799825 . - . ID=Physo155925.1;Parent=Physo155925;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 800190 801668 . + . ID=Physo155926;biotype=protein_coding;external_name=C_scaffold_9000106;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 800190 801668 . + . ID=Physo155926;Parent=Physo155926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 800190 800269 . + 0 ID=Physo155926;Parent=Physo155926;rank=1 scaffold_9 . exon 800190 800269 . + . ID=Physo155926.1;Parent=Physo155926;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 800363 800516 . + 0 ID=Physo155926;Parent=Physo155926;rank=2 scaffold_9 . exon 800363 800516 . + . ID=Physo155926.2;Parent=Physo155926;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 800559 801335 . + 0 ID=Physo155926;Parent=Physo155926;rank=3 scaffold_9 . exon 800559 801335 . + . ID=Physo155926.3;Parent=Physo155926;constitutive=1;rank=3 scaffold_9 . CDS 801357 801668 . + 0 ID=Physo155926;Parent=Physo155926;rank=4 scaffold_9 . exon 801357 801668 . + . ID=Physo155926.4;Parent=Physo155926;constitutive=1;rank=4 scaffold_9 ensembl protein_coding_gene 803584 804904 . - . ID=Physo129956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90233;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 803584 804904 . - . ID=Physo129956;Parent=Physo129956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 803584 803950 . - 0 ID=Physo129956;Parent=Physo129956;rank=5 scaffold_9 . exon 803584 803950 . - . ID=Physo129956.5;Parent=Physo129956;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 804087 804217 . - 0 ID=Physo129956;Parent=Physo129956;rank=4 scaffold_9 . exon 804087 804217 . - . ID=Physo129956.4;Parent=Physo129956;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 804294 804410 . - 0 ID=Physo129956;Parent=Physo129956;rank=3 scaffold_9 . exon 804294 804410 . - . ID=Physo129956.3;Parent=Physo129956;constitutive=1;rank=3 scaffold_9 . CDS 804486 804680 . - 0 ID=Physo129956;Parent=Physo129956;rank=2 scaffold_9 . exon 804486 804680 . - . ID=Physo129956.2;Parent=Physo129956;constitutive=1;rank=2 scaffold_9 . CDS 804746 804904 . - 0 ID=Physo129956;Parent=Physo129956;rank=1 scaffold_9 . exon 804746 804904 . - . ID=Physo129956.1;Parent=Physo129956;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 812187 813896 . - . ID=Physo129957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90234;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 812187 813896 . - . ID=Physo129957;Parent=Physo129957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 812187 812227 . - 0 ID=Physo129957;Parent=Physo129957;rank=7 scaffold_9 . exon 812187 812227 . - . ID=Physo129957.7;Parent=Physo129957;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 812299 812551 . - 0 ID=Physo129957;Parent=Physo129957;rank=6 scaffold_9 . exon 812299 812551 . - . ID=Physo129957.6;Parent=Physo129957;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_9 . CDS 812619 813356 . - 0 ID=Physo129957;Parent=Physo129957;rank=5 scaffold_9 . exon 812619 813356 . - . ID=Physo129957.5;Parent=Physo129957;constitutive=1;rank=5 scaffold_9 . CDS 813431 813504 . - 0 ID=Physo129957;Parent=Physo129957;rank=4 scaffold_9 . CDS 813584 813629 . - 0 ID=Physo129957;Parent=Physo129957;rank=3 scaffold_9 . CDS 813707 813752 . - 0 ID=Physo129957;Parent=Physo129957;rank=2 scaffold_9 . CDS 813832 813896 . - 0 ID=Physo129957;Parent=Physo129957;rank=1 scaffold_9 . biological_region 813821 813823 0.999 + . logic_name=eponine scaffold_9 . repeat_region 818961 818980 . ? . description=trf scaffold_9 . biological_region 821285 821288 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 817009 818426 . + . ID=Physo108434;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90030;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 817009 818426 . + . ID=Physo108434;Parent=Physo108434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 817009 817223 . + . ID=Physo108434.1;Parent=Physo108434;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 817041 817223 . + 0 ID=Physo108434;Parent=Physo108434;rank=1 scaffold_9 . CDS 817306 817465 . + 0 ID=Physo108434;Parent=Physo108434;rank=2 scaffold_9 . exon 817306 817465 . + . ID=Physo108434.2;Parent=Physo108434;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 817546 818426 . + 0 ID=Physo108434;Parent=Physo108434;rank=3 scaffold_9 . exon 817546 818426 . + . ID=Physo108434.3;Parent=Physo108434;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . exon 813431 813504 . - . ID=Physo129957.4;Parent=Physo129957;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . exon 813584 813629 . - . ID=Physo129957.3;Parent=Physo129957;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . exon 813707 813752 . - . ID=Physo129957.2;Parent=Physo129957;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . exon 813832 813896 . - . ID=Physo129957.1;Parent=Physo129957;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 814098 816876 . + . ID=Physo129958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90235;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 814098 816876 . + . ID=Physo129958;Parent=Physo129958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 814098 814388 . + 0 ID=Physo129958;Parent=Physo129958;rank=1 scaffold_9 . exon 814098 814388 . + . ID=Physo129958.1;Parent=Physo129958;constitutive=1;rank=1 scaffold_9 . CDS 814464 814834 . + 0 ID=Physo129958;Parent=Physo129958;rank=2 scaffold_9 . exon 814464 814834 . + . ID=Physo129958.2;Parent=Physo129958;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 814881 815859 . + 0 ID=Physo129958;Parent=Physo129958;rank=3 scaffold_9 . exon 814881 815859 . + . ID=Physo129958.3;Parent=Physo129958;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 815936 816025 . + 0 ID=Physo129958;Parent=Physo129958;rank=4 scaffold_9 . exon 815936 816025 . + . ID=Physo129958.4;Parent=Physo129958;constitutive=1;rank=4 scaffold_9 . CDS 816111 816205 . + 0 ID=Physo129958;Parent=Physo129958;rank=5 scaffold_9 . exon 816111 816205 . + . ID=Physo129958.5;Parent=Physo129958;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 816288 816365 . + 0 ID=Physo129958;Parent=Physo129958;rank=6 scaffold_9 . exon 816288 816365 . + . ID=Physo129958.6;Parent=Physo129958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_9 . CDS 816435 816704 . + 0 ID=Physo129958;Parent=Physo129958;rank=7 scaffold_9 . exon 816435 816704 . + . ID=Physo129958.7;Parent=Physo129958;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_9 . CDS 816792 816876 . + 0 ID=Physo129958;Parent=Physo129958;rank=8 scaffold_9 . exon 816792 816876 . + . ID=Physo129958.8;Parent=Physo129958;constitutive=1;ensembl_phase=2;rank=8 scaffold_9 ensembl protein_coding_gene 818708 819680 . + . ID=Physo129960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90237;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 818708 819680 . + . ID=Physo129960;Parent=Physo129960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 818708 818825 . + 0 ID=Physo129960;Parent=Physo129960;rank=1 scaffold_9 . exon 818708 818825 . + . ID=Physo129960.1;Parent=Physo129960;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 818905 819680 . + 0 ID=Physo129960;Parent=Physo129960;rank=2 scaffold_9 . exon 818905 819680 . + . ID=Physo129960.2;Parent=Physo129960;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 ensembl protein_coding_gene 819807 824548 . - . ID=Physo155929;biotype=protein_coding;external_name=C_scaffold_9000109;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 819807 824548 . - . ID=Physo155929;Parent=Physo155929;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 819807 819915 . - 0 ID=Physo155929;Parent=Physo155929;rank=14 scaffold_9 . exon 819807 819915 . - . ID=Physo155929.14;Parent=Physo155929;constitutive=1;ensembl_phase=2;rank=14 scaffold_9 . CDS 819991 820049 . - 0 ID=Physo155929;Parent=Physo155929;rank=13 scaffold_9 . exon 819991 820049 . - . ID=Physo155929.13;Parent=Physo155929;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_9 . CDS 820117 820203 . - 0 ID=Physo155929;Parent=Physo155929;rank=12 scaffold_9 . exon 820117 820203 . - . ID=Physo155929.12;Parent=Physo155929;constitutive=1;rank=12 scaffold_9 . CDS 820291 820545 . - 0 ID=Physo155929;Parent=Physo155929;rank=11 scaffold_9 . exon 820291 820545 . - . ID=Physo155929.11;Parent=Physo155929;constitutive=1;rank=11 scaffold_9 . CDS 820621 820731 . - 0 ID=Physo155929;Parent=Physo155929;rank=10 scaffold_9 . exon 820621 820731 . - . ID=Physo155929.10;Parent=Physo155929;constitutive=1;rank=10 scaffold_9 . CDS 820796 820879 . - 0 ID=Physo155929;Parent=Physo155929;rank=9 scaffold_9 . exon 820796 820879 . - . ID=Physo155929.9;Parent=Physo155929;constitutive=1;rank=9 scaffold_9 . CDS 820951 821358 . - 0 ID=Physo155929;Parent=Physo155929;rank=8 scaffold_9 . exon 820951 821358 . - . ID=Physo155929.8;Parent=Physo155929;constitutive=1;rank=8 scaffold_9 . CDS 821419 821504 . - 0 ID=Physo155929;Parent=Physo155929;rank=7 scaffold_9 . exon 821419 821504 . - . ID=Physo155929.7;Parent=Physo155929;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 821573 821645 . - 0 ID=Physo155929;Parent=Physo155929;rank=6 scaffold_9 . exon 821573 821645 . - . ID=Physo155929.6;Parent=Physo155929;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_9 . CDS 821721 821851 . - 0 ID=Physo155929;Parent=Physo155929;rank=5 scaffold_9 . exon 821721 821851 . - . ID=Physo155929.5;Parent=Physo155929;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 822370 823524 . - 0 ID=Physo155929;Parent=Physo155929;rank=4 scaffold_9 . exon 822370 823524 . - . ID=Physo155929.4;Parent=Physo155929;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 823573 823702 . - 0 ID=Physo155929;Parent=Physo155929;rank=3 scaffold_9 . CDS 823727 824039 . - 0 ID=Physo155929;Parent=Physo155929;rank=2 scaffold_9 . CDS 824145 824548 . - 0 ID=Physo155929;Parent=Physo155929;rank=1 scaffold_9 ensembl protein_coding_gene 827099 832093 . - . ID=Physo129963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90240;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 827099 832093 . - . ID=Physo129963;Parent=Physo129963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 827099 827562 . - . ID=Physo129963.16;Parent=Physo129963;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=16 scaffold_9 . CDS 827253 827562 . - 0 ID=Physo129963;Parent=Physo129963;rank=16 scaffold_9 . CDS 827635 827697 . - 0 ID=Physo129963;Parent=Physo129963;rank=15 scaffold_9 . exon 827635 827697 . - . ID=Physo129963.15;Parent=Physo129963;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=15 scaffold_9 . CDS 827767 827876 . - 0 ID=Physo129963;Parent=Physo129963;rank=14 scaffold_9 . exon 827767 827876 . - . ID=Physo129963.14;Parent=Physo129963;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_9 . CDS 828109 828157 . - 0 ID=Physo129963;Parent=Physo129963;rank=13 scaffold_9 . exon 828109 828157 . - . ID=Physo129963.13;Parent=Physo129963;constitutive=1;ensembl_phase=2;rank=13 scaffold_9 . CDS 828229 828872 . - 0 ID=Physo129963;Parent=Physo129963;rank=12 scaffold_9 . exon 828229 828872 . - . ID=Physo129963.12;Parent=Physo129963;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_9 . CDS 828939 829081 . - 0 ID=Physo129963;Parent=Physo129963;rank=11 scaffold_9 . exon 828939 829081 . - . ID=Physo129963.11;Parent=Physo129963;constitutive=1;ensembl_phase=1;rank=11 scaffold_9 . CDS 829160 829322 . - 0 ID=Physo129963;Parent=Physo129963;rank=10 scaffold_9 . exon 829160 829322 . - . ID=Physo129963.10;Parent=Physo129963;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_9 . CDS 829403 829484 . - 0 ID=Physo129963;Parent=Physo129963;rank=9 scaffold_9 . exon 829403 829484 . - . ID=Physo129963.9;Parent=Physo129963;constitutive=1;ensembl_phase=2;rank=9 scaffold_9 . CDS 829567 829748 . - 0 ID=Physo129963;Parent=Physo129963;rank=8 scaffold_9 . exon 829567 829748 . - . ID=Physo129963.8;Parent=Physo129963;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_9 . CDS 829964 830068 . - 0 ID=Physo129963;Parent=Physo129963;rank=7 scaffold_9 . exon 829964 830068 . - . ID=Physo129963.7;Parent=Physo129963;constitutive=1;rank=7 scaffold_9 . CDS 830392 830631 . - 0 ID=Physo129963;Parent=Physo129963;rank=6 scaffold_9 . exon 830392 830631 . - . ID=Physo129963.6;Parent=Physo129963;constitutive=1;rank=6 scaffold_9 . CDS 830712 830933 . - 0 ID=Physo129963;Parent=Physo129963;rank=5 scaffold_9 . exon 830712 830933 . - . ID=Physo129963.5;Parent=Physo129963;constitutive=1;rank=5 scaffold_9 . CDS 831238 831266 . - 0 ID=Physo129963;Parent=Physo129963;rank=4 scaffold_9 . exon 831238 831266 . - . ID=Physo129963.4;Parent=Physo129963;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 831292 831352 . - 0 ID=Physo129963;Parent=Physo129963;rank=3 scaffold_9 . exon 831292 831352 . - . ID=Physo129963.3;Parent=Physo129963;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 831400 831409 . - 0 ID=Physo129963;Parent=Physo129963;rank=2 scaffold_9 . exon 831400 831409 . - . ID=Physo129963.2;Parent=Physo129963;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 831876 832093 . - 0 ID=Physo129963;Parent=Physo129963;rank=1 scaffold_9 . exon 831876 832093 . - . ID=Physo129963.1;Parent=Physo129963;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . exon 823573 823702 . - . ID=Physo155929.3;Parent=Physo155929;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . exon 823727 824039 . - . ID=Physo155929.2;Parent=Physo155929;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . exon 824145 824548 . - . ID=Physo155929.1;Parent=Physo155929;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 832344 832725 . + . ID=Physo155931;biotype=protein_coding;external_name=C_scaffold_9000111;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 832344 832725 . + . ID=Physo155931;Parent=Physo155931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 832344 832416 . + 0 ID=Physo155931;Parent=Physo155931;rank=1 scaffold_9 . exon 832344 832416 . + . ID=Physo155931.1;Parent=Physo155931;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 832505 832539 . + 0 ID=Physo155931;Parent=Physo155931;rank=2 scaffold_9 . exon 832505 832539 . + . ID=Physo155931.2;Parent=Physo155931;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 832567 832725 . + 0 ID=Physo155931;Parent=Physo155931;rank=3 scaffold_9 . exon 832567 832725 . + . ID=Physo155931.3;Parent=Physo155931;constitutive=1;rank=3 scaffold_9 ensembl protein_coding_gene 832802 838322 . - . ID=Physo155932;biotype=protein_coding;external_name=C_scaffold_9000112;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 832802 838322 . - . ID=Physo155932;Parent=Physo155932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 832802 834663 . - 0 ID=Physo155932;Parent=Physo155932;rank=10 scaffold_9 . exon 832802 834663 . - . ID=Physo155932.10;Parent=Physo155932;constitutive=1;ensembl_phase=1;rank=10 scaffold_9 . CDS 834745 835026 . - 0 ID=Physo155932;Parent=Physo155932;rank=9 scaffold_9 . CDS 835165 835492 . - 0 ID=Physo155932;Parent=Physo155932;rank=8 scaffold_9 . CDS 835922 836071 . - 0 ID=Physo155932;Parent=Physo155932;rank=7 scaffold_9 . CDS 836123 836290 . - 0 ID=Physo155932;Parent=Physo155932;rank=6 scaffold_9 . CDS 836368 836576 . - 0 ID=Physo155932;Parent=Physo155932;rank=5 scaffold_9 . CDS 836928 836997 . - 0 ID=Physo155932;Parent=Physo155932;rank=4 scaffold_9 . CDS 837274 837532 . - 0 ID=Physo155932;Parent=Physo155932;rank=3 scaffold_9 . CDS 837752 838167 . - 0 ID=Physo155932;Parent=Physo155932;rank=2 scaffold_9 . CDS 838242 838322 . - 0 ID=Physo155932;Parent=Physo155932;rank=1 scaffold_9 . biological_region 837849 837851 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 838877 843602 . + . ID=Physo129965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90242;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 838877 843602 . + . ID=Physo129965;Parent=Physo129965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 838877 839198 . + 0 ID=Physo129965;Parent=Physo129965;rank=1 scaffold_9 . exon 838877 839198 . + . ID=Physo129965.1;Parent=Physo129965;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 839427 839923 . + 0 ID=Physo129965;Parent=Physo129965;rank=2 scaffold_9 . exon 839427 839923 . + . ID=Physo129965.2;Parent=Physo129965;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 839974 840180 . + 0 ID=Physo129965;Parent=Physo129965;rank=3 scaffold_9 . exon 839974 840180 . + . ID=Physo129965.3;Parent=Physo129965;constitutive=1;rank=3 scaffold_9 . CDS 840288 840990 . + 0 ID=Physo129965;Parent=Physo129965;rank=4 scaffold_9 . exon 840288 840990 . + . ID=Physo129965.4;Parent=Physo129965;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . CDS 841039 843602 . + 0 ID=Physo129965;Parent=Physo129965;rank=5 scaffold_9 . exon 841039 843602 . + . ID=Physo129965.5;Parent=Physo129965;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . exon 834745 835026 . - . ID=Physo155932.9;Parent=Physo155932;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_9 . exon 835165 835492 . - . ID=Physo155932.8;Parent=Physo155932;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_9 . exon 835922 836071 . - . ID=Physo155932.7;Parent=Physo155932;constitutive=1;rank=7 scaffold_9 . exon 836123 836290 . - . ID=Physo155932.6;Parent=Physo155932;constitutive=1;rank=6 scaffold_9 . exon 836368 836576 . - . ID=Physo155932.5;Parent=Physo155932;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . exon 836928 836997 . - . ID=Physo155932.4;Parent=Physo155932;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . exon 837274 837532 . - . ID=Physo155932.3;Parent=Physo155932;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . exon 837752 838167 . - . ID=Physo155932.2;Parent=Physo155932;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . exon 838242 838322 . - . ID=Physo155932.1;Parent=Physo155932;constitutive=1;rank=1 scaffold_9 . repeat_region 844959 844983 . ? . description=trf scaffold_9 . repeat_region 848829 848862 . ? . description=trf scaffold_9 . repeat_region 849774 849781 . ? . description=dust scaffold_9 . repeat_region 850041 850050 . ? . description=dust scaffold_9 ensembl protein_coding_gene 845062 845856 . + . ID=Physo129966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90243;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 845062 845856 . + . ID=Physo129966;Parent=Physo129966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 845062 845856 . + 0 ID=Physo129966;Parent=Physo129966;rank=1 scaffold_9 . exon 845062 845856 . + . ID=Physo129966.1;Parent=Physo129966;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 846177 850150 . - . ID=Physo155937;biotype=protein_coding;external_name=C_scaffold_9000117;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 846177 850150 . - . ID=Physo155937;Parent=Physo155937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 846177 846923 . - 0 ID=Physo155937;Parent=Physo155937;rank=15 scaffold_9 . exon 846177 846923 . - . ID=Physo155937.15;Parent=Physo155937;constitutive=1;rank=15 scaffold_9 . CDS 846972 847409 . - 0 ID=Physo155937;Parent=Physo155937;rank=14 scaffold_9 . exon 846972 847409 . - . ID=Physo155937.14;Parent=Physo155937;constitutive=1;rank=14 scaffold_9 . CDS 847486 848034 . - 0 ID=Physo155937;Parent=Physo155937;rank=13 scaffold_9 . exon 847486 848034 . - . ID=Physo155937.13;Parent=Physo155937;constitutive=1;rank=13 scaffold_9 . CDS 848106 848262 . - 0 ID=Physo155937;Parent=Physo155937;rank=12 scaffold_9 . exon 848106 848262 . - . ID=Physo155937.12;Parent=Physo155937;constitutive=1;ensembl_phase=2;rank=12 scaffold_9 . CDS 848341 848401 . - 0 ID=Physo155937;Parent=Physo155937;rank=11 scaffold_9 . exon 848341 848401 . - . ID=Physo155937.11;Parent=Physo155937;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_9 . CDS 848504 848754 . - 0 ID=Physo155937;Parent=Physo155937;rank=10 scaffold_9 . exon 848504 848754 . - . ID=Physo155937.10;Parent=Physo155937;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_9 . CDS 848891 848983 . - 0 ID=Physo155937;Parent=Physo155937;rank=9 scaffold_9 . exon 848891 848983 . - . ID=Physo155937.9;Parent=Physo155937;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_9 . CDS 849058 849181 . - 0 ID=Physo155937;Parent=Physo155937;rank=8 scaffold_9 . exon 849058 849181 . - . ID=Physo155937.8;Parent=Physo155937;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_9 . CDS 849250 849337 . - 0 ID=Physo155937;Parent=Physo155937;rank=7 scaffold_9 . exon 849250 849337 . - . ID=Physo155937.7;Parent=Physo155937;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_9 . CDS 849415 849492 . - 0 ID=Physo155937;Parent=Physo155937;rank=6 scaffold_9 . exon 849415 849492 . - . ID=Physo155937.6;Parent=Physo155937;constitutive=1;rank=6 scaffold_9 . CDS 849559 849600 . - 0 ID=Physo155937;Parent=Physo155937;rank=5 scaffold_9 . exon 849559 849600 . - . ID=Physo155937.5;Parent=Physo155937;constitutive=1;rank=5 scaffold_9 . CDS 849676 849738 . - 0 ID=Physo155937;Parent=Physo155937;rank=4 scaffold_9 . exon 849676 849738 . - . ID=Physo155937.4;Parent=Physo155937;constitutive=1;rank=4 scaffold_9 . CDS 849811 849862 . - 0 ID=Physo155937;Parent=Physo155937;rank=3 scaffold_9 . exon 849811 849862 . - . ID=Physo155937.3;Parent=Physo155937;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 849935 850013 . - 0 ID=Physo155937;Parent=Physo155937;rank=2 scaffold_9 . exon 849935 850013 . - . ID=Physo155937.2;Parent=Physo155937;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 850126 850150 . - 0 ID=Physo155937;Parent=Physo155937;rank=1 scaffold_9 . exon 850126 850150 . - . ID=Physo155937.1;Parent=Physo155937;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 850840 852084 . + . ID=Physo155938;biotype=protein_coding;external_name=C_scaffold_9000118;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 850840 852084 . + . ID=Physo155938;Parent=Physo155938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 850840 851210 . + 0 ID=Physo155938;Parent=Physo155938;rank=1 scaffold_9 . exon 850840 851210 . + . ID=Physo155938.1;Parent=Physo155938;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 851235 852084 . + 0 ID=Physo155938;Parent=Physo155938;rank=2 scaffold_9 . exon 851235 852084 . + . ID=Physo155938.2;Parent=Physo155938;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . biological_region 861573 861578 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 853481 855694 . + . ID=Physo129969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90246;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 853481 855694 . + . ID=Physo129969;Parent=Physo129969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 853481 855694 . + 0 ID=Physo129969;Parent=Physo129969;rank=1 scaffold_9 . exon 853481 855694 . + . ID=Physo129969.1;Parent=Physo129969;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 859260 860910 . + . ID=Physo129970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90247;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 859260 860910 . + . ID=Physo129970;Parent=Physo129970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 859260 859268 . + 0 ID=Physo129970;Parent=Physo129970;rank=1 scaffold_9 . exon 859260 859268 . + . ID=Physo129970.1;Parent=Physo129970;constitutive=1;rank=1 scaffold_9 . CDS 859699 860324 . + 0 ID=Physo129970;Parent=Physo129970;rank=2 scaffold_9 . exon 859699 860324 . + . ID=Physo129970.2;Parent=Physo129970;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 860367 860910 . + 0 ID=Physo129970;Parent=Physo129970;rank=3 scaffold_9 . exon 860367 860910 . + . ID=Physo129970.3;Parent=Physo129970;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 ensembl protein_coding_gene 861061 864618 . - . ID=Physo155940;biotype=protein_coding;external_name=C_scaffold_9000120;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 861061 864618 . - . ID=Physo155940;Parent=Physo155940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 861061 861153 . - 0 ID=Physo155940;Parent=Physo155940;rank=5 scaffold_9 . exon 861061 861153 . - . ID=Physo155940.5;Parent=Physo155940;constitutive=1;rank=5 scaffold_9 . CDS 861175 862951 . - 0 ID=Physo155940;Parent=Physo155940;rank=4 scaffold_9 . exon 861175 862951 . - . ID=Physo155940.4;Parent=Physo155940;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 863261 864035 . - 0 ID=Physo155940;Parent=Physo155940;rank=3 scaffold_9 . CDS 864249 864446 . - 0 ID=Physo155940;Parent=Physo155940;rank=2 scaffold_9 . CDS 864537 864618 . - 0 ID=Physo155940;Parent=Physo155940;rank=1 scaffold_9 ensembl protein_coding_gene 865023 865373 . + . ID=Physo108435;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90031;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 865023 865373 . + . ID=Physo108435;Parent=Physo108435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 865023 865088 . + 0 ID=Physo108435;Parent=Physo108435;rank=1 scaffold_9 . exon 865023 865088 . + . ID=Physo108435.1;Parent=Physo108435;constitutive=1;rank=1 scaffold_9 . CDS 865161 865373 . + 0 ID=Physo108435;Parent=Physo108435;rank=2 scaffold_9 . exon 865161 865373 . + . ID=Physo108435.2;Parent=Physo108435;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 871858 874667 . + . ID=Physo129974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90251;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 871858 874667 . + . ID=Physo129974;Parent=Physo129974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 871858 874638 . + 0 ID=Physo129974;Parent=Physo129974;rank=1 scaffold_9 . exon 871858 874667 . + . ID=Physo129974.1;Parent=Physo129974;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 . exon 863261 864035 . - . ID=Physo155940.3;Parent=Physo155940;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . exon 864249 864446 . - . ID=Physo155940.2;Parent=Physo155940;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . exon 864537 864618 . - . ID=Physo155940.1;Parent=Physo155940;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 865579 870835 . - . ID=Physo155944;biotype=protein_coding;external_name=C_scaffold_9000124;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 865579 870835 . - . ID=Physo155944;Parent=Physo155944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 865579 865690 . - 0 ID=Physo155944;Parent=Physo155944;rank=15 scaffold_9 . exon 865579 865690 . - . ID=Physo155944.15;Parent=Physo155944;constitutive=1;ensembl_phase=2;rank=15 scaffold_9 . CDS 865773 865981 . - 0 ID=Physo155944;Parent=Physo155944;rank=14 scaffold_9 . exon 865773 865981 . - . ID=Physo155944.14;Parent=Physo155944;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_9 . CDS 866050 866267 . - 0 ID=Physo155944;Parent=Physo155944;rank=13 scaffold_9 . exon 866050 866267 . - . ID=Physo155944.13;Parent=Physo155944;constitutive=1;ensembl_phase=1;rank=13 scaffold_9 . CDS 866389 866428 . - 0 ID=Physo155944;Parent=Physo155944;rank=12 scaffold_9 . exon 866389 866428 . - . ID=Physo155944.12;Parent=Physo155944;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_9 . CDS 866499 867373 . - 0 ID=Physo155944;Parent=Physo155944;rank=11 scaffold_9 . exon 866499 867373 . - . ID=Physo155944.11;Parent=Physo155944;constitutive=1;ensembl_phase=1;rank=11 scaffold_9 . CDS 867416 867608 . - 0 ID=Physo155944;Parent=Physo155944;rank=10 scaffold_9 . exon 867416 867608 . - . ID=Physo155944.10;Parent=Physo155944;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_9 . CDS 867846 867984 . - 0 ID=Physo155944;Parent=Physo155944;rank=9 scaffold_9 . exon 867846 867984 . - . ID=Physo155944.9;Parent=Physo155944;constitutive=1;ensembl_phase=2;rank=9 scaffold_9 . CDS 868304 868430 . - 0 ID=Physo155944;Parent=Physo155944;rank=8 scaffold_9 . exon 868304 868430 . - . ID=Physo155944.8;Parent=Physo155944;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_9 . CDS 868500 868722 . - 0 ID=Physo155944;Parent=Physo155944;rank=7 scaffold_9 . exon 868500 868722 . - . ID=Physo155944.7;Parent=Physo155944;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_9 . CDS 868765 869214 . - 0 ID=Physo155944;Parent=Physo155944;rank=6 scaffold_9 . exon 868765 869214 . - . ID=Physo155944.6;Parent=Physo155944;constitutive=1;rank=6 scaffold_9 . CDS 869515 869802 . - 0 ID=Physo155944;Parent=Physo155944;rank=5 scaffold_9 . exon 869515 869802 . - . ID=Physo155944.5;Parent=Physo155944;constitutive=1;rank=5 scaffold_9 . CDS 869868 870370 . - 0 ID=Physo155944;Parent=Physo155944;rank=4 scaffold_9 . exon 869868 870370 . - . ID=Physo155944.4;Parent=Physo155944;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 870533 870649 . - 0 ID=Physo155944;Parent=Physo155944;rank=3 scaffold_9 . exon 870533 870649 . - . ID=Physo155944.3;Parent=Physo155944;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 870711 870755 . - 0 ID=Physo155944;Parent=Physo155944;rank=2 scaffold_9 . exon 870711 870755 . - . ID=Physo155944.2;Parent=Physo155944;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 870811 870835 . - 0 ID=Physo155944;Parent=Physo155944;rank=1 scaffold_9 . exon 870811 870835 . - . ID=Physo155944.1;Parent=Physo155944;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . repeat_region 872727 872758 . ? . description=trf scaffold_9 . biological_region 873810 873812 0.999 - . logic_name=eponine scaffold_9 . biological_region 874036 874036 0.999 + . logic_name=eponine scaffold_9 . biological_region 875763 875766 0.999 - . logic_name=eponine scaffold_9 . biological_region 875839 875842 0.999 - . logic_name=eponine scaffold_9 . biological_region 876181 876181 0.999 + . logic_name=eponine scaffold_9 . biological_region 881263 881264 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 876604 877836 . + . ID=Physo129976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90253;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 876604 877836 . + . ID=Physo129976;Parent=Physo129976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 876604 876701 . + 0 ID=Physo129976;Parent=Physo129976;rank=1 scaffold_9 . exon 876604 876701 . + . ID=Physo129976.1;Parent=Physo129976;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 876801 876977 . + 0 ID=Physo129976;Parent=Physo129976;rank=2 scaffold_9 . exon 876801 876977 . + . ID=Physo129976.2;Parent=Physo129976;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 877048 877554 . + 0 ID=Physo129976;Parent=Physo129976;rank=3 scaffold_9 . exon 877048 877554 . + . ID=Physo129976.3;Parent=Physo129976;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . CDS 877767 877836 . + 0 ID=Physo129976;Parent=Physo129976;rank=4 scaffold_9 . exon 877767 877836 . + . ID=Physo129976.4;Parent=Physo129976;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 ensembl protein_coding_gene 877939 879765 . - . ID=Physo129977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90254;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 877939 879765 . - . ID=Physo129977;Parent=Physo129977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 877939 878207 . - . ID=Physo129977.4;Parent=Physo129977;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_9 . CDS 878001 878207 . - 0 ID=Physo129977;Parent=Physo129977;rank=4 scaffold_9 . CDS 878280 878432 . - 0 ID=Physo129977;Parent=Physo129977;rank=3 scaffold_9 . exon 878280 878432 . - . ID=Physo129977.3;Parent=Physo129977;constitutive=1;rank=3 scaffold_9 . CDS 878508 879467 . - 0 ID=Physo129977;Parent=Physo129977;rank=2 scaffold_9 . exon 878508 879467 . - . ID=Physo129977.2;Parent=Physo129977;constitutive=1;rank=2 scaffold_9 . CDS 879550 879765 . - 0 ID=Physo129977;Parent=Physo129977;rank=1 scaffold_9 . exon 879550 879765 . - . ID=Physo129977.1;Parent=Physo129977;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 874688 875932 . - . ID=Physo155946;biotype=protein_coding;external_name=C_scaffold_9000126;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 874688 875932 . - . ID=Physo155946;Parent=Physo155946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 874688 875079 . - 0 ID=Physo155946;Parent=Physo155946;rank=3 scaffold_9 . exon 874688 875079 . - . ID=Physo155946.3;Parent=Physo155946;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 875161 875419 . - 0 ID=Physo155946;Parent=Physo155946;rank=2 scaffold_9 . exon 875161 875419 . - . ID=Physo155946.2;Parent=Physo155946;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 875498 875932 . - 0 ID=Physo155946;Parent=Physo155946;rank=1 scaffold_9 . exon 875498 875932 . - . ID=Physo155946.1;Parent=Physo155946;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 880132 880324 . - . ID=Physo155948;biotype=protein_coding;external_name=C_scaffold_9000128;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 880132 880324 . - . ID=Physo155948;Parent=Physo155948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 880132 880191 . - 0 ID=Physo155948;Parent=Physo155948;rank=2 scaffold_9 . exon 880132 880191 . - . ID=Physo155948.2;Parent=Physo155948;constitutive=1;rank=2 scaffold_9 . CDS 880268 880324 . - 0 ID=Physo155948;Parent=Physo155948;rank=1 scaffold_9 . exon 880268 880324 . - . ID=Physo155948.1;Parent=Physo155948;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 880600 881008 . - . ID=Physo155949;biotype=protein_coding;external_name=C_scaffold_9000129;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 880600 881008 . - . ID=Physo155949;Parent=Physo155949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 880600 880659 . - 0 ID=Physo155949;Parent=Physo155949;rank=2 scaffold_9 . exon 880600 880659 . - . ID=Physo155949.2;Parent=Physo155949;constitutive=1;rank=2 scaffold_9 . CDS 880742 881008 . - 0 ID=Physo155949;Parent=Physo155949;rank=1 scaffold_9 . exon 880742 881008 . - . ID=Physo155949.1;Parent=Physo155949;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 881157 882404 . + . ID=Physo155950;biotype=protein_coding;external_name=C_scaffold_9000130;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 881157 882404 . + . ID=Physo155950;Parent=Physo155950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 881157 881456 . + 0 ID=Physo155950;Parent=Physo155950;rank=1 scaffold_9 . exon 881157 881456 . + . ID=Physo155950.1;Parent=Physo155950;constitutive=1;rank=1 scaffold_9 . CDS 881527 881847 . + 0 ID=Physo155950;Parent=Physo155950;rank=2 scaffold_9 . exon 881527 881847 . + . ID=Physo155950.2;Parent=Physo155950;constitutive=1;rank=2 scaffold_9 . CDS 881927 882007 . + 0 ID=Physo155950;Parent=Physo155950;rank=3 scaffold_9 . exon 881927 882007 . + . ID=Physo155950.3;Parent=Physo155950;constitutive=1;rank=3 scaffold_9 . CDS 882071 882282 . + 0 ID=Physo155950;Parent=Physo155950;rank=4 scaffold_9 . exon 882071 882282 . + . ID=Physo155950.4;Parent=Physo155950;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 882353 882404 . + 0 ID=Physo155950;Parent=Physo155950;rank=5 scaffold_9 . exon 882353 882404 . + . ID=Physo155950.5;Parent=Physo155950;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . repeat_region 883241 883248 . ? . description=dust scaffold_9 ensembl protein_coding_gene 883617 884088 . + . ID=Physo108437;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90033;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 883617 884088 . + . ID=Physo108437;Parent=Physo108437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 883617 884088 . + . ID=Physo108437.1;Parent=Physo108437;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 883630 883941 . + 0 ID=Physo108437;Parent=Physo108437;rank=1 scaffold_9 ensembl protein_coding_gene 886912 889892 . + . ID=Physo108438;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90034;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 886912 889892 . + . ID=Physo108438;Parent=Physo108438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 886912 886920 . + 0 ID=Physo108438;Parent=Physo108438;rank=1 scaffold_9 . exon 886912 886920 . + . ID=Physo108438.1;Parent=Physo108438;constitutive=1;rank=1 scaffold_9 . CDS 887077 887080 . + 0 ID=Physo108438;Parent=Physo108438;rank=2 scaffold_9 . exon 887077 887080 . + . ID=Physo108438.2;Parent=Physo108438;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 887948 888030 . + 0 ID=Physo108438;Parent=Physo108438;rank=3 scaffold_9 . exon 887948 888030 . + . ID=Physo108438.3;Parent=Physo108438;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 888126 889748 . + 0 ID=Physo108438;Parent=Physo108438;rank=4 scaffold_9 . exon 888126 889892 . + . ID=Physo108438.4;Parent=Physo108438;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_9 ensembl protein_coding_gene 884174 884854 . - . ID=Physo129982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90259;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 884174 884854 . - . ID=Physo129982;Parent=Physo129982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 884174 884854 . - 0 ID=Physo129982;Parent=Physo129982;rank=1 scaffold_9 . exon 884174 884854 . - . ID=Physo129982.1;Parent=Physo129982;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 889925 890317 . - . ID=Physo129985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90262;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 889925 890317 . - . ID=Physo129985;Parent=Physo129985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 889925 890143 . - 0 ID=Physo129985;Parent=Physo129985;rank=2 scaffold_9 . exon 889925 890143 . - . ID=Physo129985.2;Parent=Physo129985;constitutive=1;rank=2 scaffold_9 . CDS 890219 890317 . - 0 ID=Physo129985;Parent=Physo129985;rank=1 scaffold_9 . exon 890219 890317 . - . ID=Physo129985.1;Parent=Physo129985;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 882685 883008 . - . ID=Physo155951;biotype=protein_coding;external_name=C_scaffold_9000131;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 882685 883008 . - . ID=Physo155951;Parent=Physo155951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 882685 882724 . - 0 ID=Physo155951;Parent=Physo155951;rank=2 scaffold_9 . exon 882685 882724 . - . ID=Physo155951.2;Parent=Physo155951;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 882751 883007 . - 0 ID=Physo155951;Parent=Physo155951;rank=1 scaffold_9 . exon 882751 883008 . - . ID=Physo155951.1;Parent=Physo155951;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 884948 886740 . + . ID=Physo155952;biotype=protein_coding;external_name=C_scaffold_9000132;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 884948 886740 . + . ID=Physo155952;Parent=Physo155952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 884948 885782 . + 0 ID=Physo155952;Parent=Physo155952;rank=1 scaffold_9 . exon 884948 885782 . + . ID=Physo155952.1;Parent=Physo155952;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 885849 886111 . + 0 ID=Physo155952;Parent=Physo155952;rank=2 scaffold_9 . exon 885849 886111 . + . ID=Physo155952.2;Parent=Physo155952;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 886175 886456 . + 0 ID=Physo155952;Parent=Physo155952;rank=3 scaffold_9 . exon 886175 886456 . + . ID=Physo155952.3;Parent=Physo155952;constitutive=1;rank=3 scaffold_9 . CDS 886561 886740 . + 0 ID=Physo155952;Parent=Physo155952;rank=4 scaffold_9 . exon 886561 886740 . + . ID=Physo155952.4;Parent=Physo155952;constitutive=1;rank=4 scaffold_9 ensembl protein_coding_gene 890834 891919 . - . ID=Physo155955;biotype=protein_coding;external_name=C_scaffold_9000135;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 890834 891919 . - . ID=Physo155955;Parent=Physo155955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 890834 891052 . - 0 ID=Physo155955;Parent=Physo155955;rank=4 scaffold_9 . exon 890834 891052 . - . ID=Physo155955.4;Parent=Physo155955;constitutive=1;rank=4 scaffold_9 . CDS 891269 891500 . - 0 ID=Physo155955;Parent=Physo155955;rank=3 scaffold_9 . exon 891269 891500 . - . ID=Physo155955.3;Parent=Physo155955;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 891534 891703 . - 0 ID=Physo155955;Parent=Physo155955;rank=2 scaffold_9 . exon 891534 891703 . - . ID=Physo155955.2;Parent=Physo155955;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 891785 891919 . - 0 ID=Physo155955;Parent=Physo155955;rank=1 scaffold_9 . exon 891785 891919 . - . ID=Physo155955.1;Parent=Physo155955;constitutive=1;rank=1 scaffold_9 . biological_region 894918 894920 0.999 + . logic_name=eponine scaffold_9 . biological_region 895480 895481 0.999 - . logic_name=eponine scaffold_9 . biological_region 900876 900880 0.999 - . logic_name=eponine scaffold_9 . biological_region 900899 900900 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 894433 894675 . + . ID=Physo112455;biotype=protein_coding;external_name=estExt_Genewise1.C_90233;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 894433 894675 . + . ID=Physo112455;Parent=Physo112455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 894433 894675 . + . ID=Physo112455.1;Parent=Physo112455;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 894435 894674 . + 0 ID=Physo112455;Parent=Physo112455;rank=1 scaffold_9 ensembl protein_coding_gene 895897 896361 . + . ID=Physo112457;biotype=protein_coding;external_name=estExt_Genewise1.C_90235;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 895897 896361 . + . ID=Physo112457;Parent=Physo112457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 895897 896361 . + . ID=Physo112457.1;Parent=Physo112457;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 895945 896361 . + 0 ID=Physo112457;Parent=Physo112457;rank=1 scaffold_9 ensembl protein_coding_gene 897924 902956 . - . ID=Physo155959;biotype=protein_coding;external_name=C_scaffold_9000139;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 897924 902956 . - . ID=Physo155959;Parent=Physo155959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 897924 898349 . - 0 ID=Physo155959;Parent=Physo155959;rank=13 scaffold_9 . exon 897924 898349 . - . ID=Physo155959.13;Parent=Physo155959;constitutive=1;rank=13 scaffold_9 . CDS 898424 898702 . - 0 ID=Physo155959;Parent=Physo155959;rank=12 scaffold_9 . exon 898424 898702 . - . ID=Physo155959.12;Parent=Physo155959;constitutive=1;rank=12 scaffold_9 . CDS 898773 898859 . - 0 ID=Physo155959;Parent=Physo155959;rank=11 scaffold_9 . exon 898773 898859 . - . ID=Physo155959.11;Parent=Physo155959;constitutive=1;rank=11 scaffold_9 . CDS 898945 898983 . - 0 ID=Physo155959;Parent=Physo155959;rank=10 scaffold_9 . exon 898945 898983 . - . ID=Physo155959.10;Parent=Physo155959;constitutive=1;rank=10 scaffold_9 . CDS 899070 899106 . - 0 ID=Physo155959;Parent=Physo155959;rank=9 scaffold_9 . exon 899070 899106 . - . ID=Physo155959.9;Parent=Physo155959;constitutive=1;ensembl_phase=2;rank=9 scaffold_9 . CDS 899165 899517 . - 0 ID=Physo155959;Parent=Physo155959;rank=8 scaffold_9 . exon 899165 899517 . - . ID=Physo155959.8;Parent=Physo155959;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_9 . CDS 899586 899643 . - 0 ID=Physo155959;Parent=Physo155959;rank=7 scaffold_9 . exon 899586 899643 . - . ID=Physo155959.7;Parent=Physo155959;constitutive=1;ensembl_phase=2;rank=7 scaffold_9 . CDS 899763 900136 . - 0 ID=Physo155959;Parent=Physo155959;rank=6 scaffold_9 . exon 899763 900136 . - . ID=Physo155959.6;Parent=Physo155959;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_9 . CDS 900176 900593 . - 0 ID=Physo155959;Parent=Physo155959;rank=5 scaffold_9 . exon 900176 900593 . - . ID=Physo155959.5;Parent=Physo155959;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 . CDS 900636 901323 . - 0 ID=Physo155959;Parent=Physo155959;rank=4 scaffold_9 . exon 900636 901323 . - . ID=Physo155959.4;Parent=Physo155959;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_9 . CDS 901453 901529 . - 0 ID=Physo155959;Parent=Physo155959;rank=3 scaffold_9 . exon 901453 901529 . - . ID=Physo155959.3;Parent=Physo155959;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 901554 902469 . - 0 ID=Physo155959;Parent=Physo155959;rank=2 scaffold_9 . exon 901554 902469 . - . ID=Physo155959.2;Parent=Physo155959;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 902758 902956 . - 0 ID=Physo155959;Parent=Physo155959;rank=1 scaffold_9 . repeat_region 903814 903863 . ? . description=trf scaffold_9 . repeat_region 903892 903943 . ? . description=trf scaffold_9 . repeat_region 906245 906300 . ? . description=dust scaffold_9 . repeat_region 906382 906413 . ? . description=trf scaffold_9 . repeat_region 906401 906449 . ? . description=trf scaffold_9 . repeat_region 910461 910524 . ? . description=dust scaffold_9 . repeat_region 911086 911133 . ? . description=trf scaffold_9 ensembl protein_coding_gene 903171 906485 . - . ID=Physo129988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90265;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 903171 906485 . - . ID=Physo129988;Parent=Physo129988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 903171 906485 . - 0 ID=Physo129988;Parent=Physo129988;rank=1 scaffold_9 . exon 903171 906485 . - . ID=Physo129988.1;Parent=Physo129988;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 906830 908822 . + . ID=Physo129989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90266;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 906830 908822 . + . ID=Physo129989;Parent=Physo129989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 906830 906963 . + . ID=Physo129989.1;Parent=Physo129989;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_9 . CDS 906846 906963 . + 0 ID=Physo129989;Parent=Physo129989;rank=1 scaffold_9 . CDS 907054 907198 . + 0 ID=Physo129989;Parent=Physo129989;rank=2 scaffold_9 . exon 907054 907198 . + . ID=Physo129989.2;Parent=Physo129989;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 907287 907536 . + 0 ID=Physo129989;Parent=Physo129989;rank=3 scaffold_9 . exon 907287 907536 . + . ID=Physo129989.3;Parent=Physo129989;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 907615 908233 . + 0 ID=Physo129989;Parent=Physo129989;rank=4 scaffold_9 . exon 907615 908233 . + . ID=Physo129989.4;Parent=Physo129989;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . CDS 908284 908588 . + 0 ID=Physo129989;Parent=Physo129989;rank=5 scaffold_9 . exon 908284 908588 . + . ID=Physo129989.5;Parent=Physo129989;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 908661 908822 . + 0 ID=Physo129989;Parent=Physo129989;rank=6 scaffold_9 . exon 908661 908822 . + . ID=Physo129989.6;Parent=Physo129989;constitutive=1;rank=6 scaffold_9 ensembl protein_coding_gene 910331 911529 . + . ID=Physo129990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90267;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 910331 911529 . + . ID=Physo129990;Parent=Physo129990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 910331 911356 . + 0 ID=Physo129990;Parent=Physo129990;rank=1 scaffold_9 . exon 910331 911529 . + . ID=Physo129990.1;Parent=Physo129990;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 911703 912399 . + . ID=Physo129991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90268;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 911703 912399 . + . ID=Physo129991;Parent=Physo129991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 911703 911920 . + 0 ID=Physo129991;Parent=Physo129991;rank=1 scaffold_9 . exon 911703 911920 . + . ID=Physo129991.1;Parent=Physo129991;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 912001 912056 . + 0 ID=Physo129991;Parent=Physo129991;rank=2 scaffold_9 . exon 912001 912056 . + . ID=Physo129991.2;Parent=Physo129991;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 912135 912241 . + 0 ID=Physo129991;Parent=Physo129991;rank=3 scaffold_9 . exon 912135 912399 . + . ID=Physo129991.3;Parent=Physo129991;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_9 . exon 902758 902956 . - . ID=Physo155959.1;Parent=Physo155959;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 909419 910110 . - . ID=Physo155964;biotype=protein_coding;external_name=C_scaffold_9000144;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 909419 910110 . - . ID=Physo155964;Parent=Physo155964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 909419 909465 . - 0 ID=Physo155964;Parent=Physo155964;rank=4 scaffold_9 . exon 909419 909465 . - . ID=Physo155964.4;Parent=Physo155964;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 909550 909738 . - 0 ID=Physo155964;Parent=Physo155964;rank=3 scaffold_9 . exon 909550 909738 . - . ID=Physo155964.3;Parent=Physo155964;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 909811 909903 . - 0 ID=Physo155964;Parent=Physo155964;rank=2 scaffold_9 . exon 909811 909903 . - . ID=Physo155964.2;Parent=Physo155964;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 909975 910110 . - 0 ID=Physo155964;Parent=Physo155964;rank=1 scaffold_9 . exon 909975 910110 . - . ID=Physo155964.1;Parent=Physo155964;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . biological_region 914103 914106 0.999 - . logic_name=eponine scaffold_9 . biological_region 914180 914184 0.999 - . logic_name=eponine scaffold_9 . biological_region 914993 914997 0.999 - . logic_name=eponine scaffold_9 . biological_region 917517 917520 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 914771 918104 . + . ID=Physo108439;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90035;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 914771 918104 . + . ID=Physo108439;Parent=Physo108439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 914771 915133 . + 0 ID=Physo108439;Parent=Physo108439;rank=1 scaffold_9 . exon 914771 915133 . + . ID=Physo108439.1;Parent=Physo108439;constitutive=1;rank=1 scaffold_9 . CDS 915231 916991 . + 0 ID=Physo108439;Parent=Physo108439;rank=2 scaffold_9 . exon 915231 916991 . + . ID=Physo108439.2;Parent=Physo108439;constitutive=1;rank=2 scaffold_9 . CDS 917065 918048 . + 0 ID=Physo108439;Parent=Physo108439;rank=3 scaffold_9 . exon 917065 918104 . + . ID=Physo108439.3;Parent=Physo108439;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_9 ensembl protein_coding_gene 912489 914240 . - . ID=Physo129992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90269;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 912489 914240 . - . ID=Physo129992;Parent=Physo129992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 912489 912605 . - 0 ID=Physo129992;Parent=Physo129992;rank=8 scaffold_9 . exon 912489 912605 . - . ID=Physo129992.8;Parent=Physo129992;constitutive=1;rank=8 scaffold_9 . CDS 912699 912893 . - 0 ID=Physo129992;Parent=Physo129992;rank=7 scaffold_9 . exon 912699 912893 . - . ID=Physo129992.7;Parent=Physo129992;constitutive=1;rank=7 scaffold_9 . CDS 912968 913205 . - 0 ID=Physo129992;Parent=Physo129992;rank=6 scaffold_9 . exon 912968 913205 . - . ID=Physo129992.6;Parent=Physo129992;constitutive=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 913278 913474 . - 0 ID=Physo129992;Parent=Physo129992;rank=5 scaffold_9 . exon 913278 913474 . - . ID=Physo129992.5;Parent=Physo129992;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_9 . CDS 913539 913722 . - 0 ID=Physo129992;Parent=Physo129992;rank=4 scaffold_9 . exon 913539 913722 . - . ID=Physo129992.4;Parent=Physo129992;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 . CDS 913809 913889 . - 0 ID=Physo129992;Parent=Physo129992;rank=3 scaffold_9 . exon 913809 913889 . - . ID=Physo129992.3;Parent=Physo129992;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_9 . CDS 913978 914152 . - 0 ID=Physo129992;Parent=Physo129992;rank=2 scaffold_9 . exon 913978 914152 . - . ID=Physo129992.2;Parent=Physo129992;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 914222 914240 . - 0 ID=Physo129992;Parent=Physo129992;rank=1 scaffold_9 . exon 914222 914240 . - . ID=Physo129992.1;Parent=Physo129992;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 921054 924026 . - . ID=Physo129995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90272;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 921054 924026 . - . ID=Physo129995;Parent=Physo129995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 921054 924026 . - 0 ID=Physo129995;Parent=Physo129995;rank=1 scaffold_9 . exon 921054 924026 . - . ID=Physo129995.1;Parent=Physo129995;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 918312 920838 . + . ID=Physo155968;biotype=protein_coding;external_name=C_scaffold_9000148;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 918312 920838 . + . ID=Physo155968;Parent=Physo155968;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 918312 918393 . + 0 ID=Physo155968;Parent=Physo155968;rank=1 scaffold_9 . exon 918312 918393 . + . ID=Physo155968.1;Parent=Physo155968;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 918420 918742 . + 0 ID=Physo155968;Parent=Physo155968;rank=2 scaffold_9 . exon 918420 918742 . + . ID=Physo155968.2;Parent=Physo155968;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 918817 918880 . + 0 ID=Physo155968;Parent=Physo155968;rank=3 scaffold_9 . exon 918817 918880 . + . ID=Physo155968.3;Parent=Physo155968;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 918951 919340 . + 0 ID=Physo155968;Parent=Physo155968;rank=4 scaffold_9 . exon 918951 919340 . + . ID=Physo155968.4;Parent=Physo155968;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 919413 919474 . + 0 ID=Physo155968;Parent=Physo155968;rank=5 scaffold_9 . exon 919413 919474 . + . ID=Physo155968.5;Parent=Physo155968;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 919535 919708 . + 0 ID=Physo155968;Parent=Physo155968;rank=6 scaffold_9 . exon 919535 919708 . + . ID=Physo155968.6;Parent=Physo155968;constitutive=1;rank=6 scaffold_9 . CDS 919899 920027 . + 0 ID=Physo155968;Parent=Physo155968;rank=7 scaffold_9 . exon 919899 920027 . + . ID=Physo155968.7;Parent=Physo155968;constitutive=1;rank=7 scaffold_9 . CDS 920124 920202 . + 0 ID=Physo155968;Parent=Physo155968;rank=8 scaffold_9 . exon 920124 920202 . + . ID=Physo155968.8;Parent=Physo155968;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_9 . CDS 920274 920527 . + 0 ID=Physo155968;Parent=Physo155968;rank=9 scaffold_9 . exon 920274 920527 . + . ID=Physo155968.9;Parent=Physo155968;constitutive=1;ensembl_phase=1;rank=9 scaffold_9 . CDS 920598 920676 . + 0 ID=Physo155968;Parent=Physo155968;rank=10 scaffold_9 . exon 920598 920676 . + . ID=Physo155968.10;Parent=Physo155968;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_9 . CDS 920747 920838 . + 0 ID=Physo155968;Parent=Physo155968;rank=11 scaffold_9 . exon 920747 920838 . + . ID=Physo155968.11;Parent=Physo155968;constitutive=1;ensembl_phase=1;rank=11 scaffold_9 . repeat_region 923939 923988 . ? . description=dust scaffold_9 . repeat_region 923939 923988 . ? . description=trf scaffold_9 . repeat_region 928065 928075 . ? . description=dust scaffold_9 ensembl protein_coding_gene 929484 930050 . + . ID=Physo108440;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90036;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 929484 930050 . + . ID=Physo108440;Parent=Physo108440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 929484 929564 . + 0 ID=Physo108440;Parent=Physo108440;rank=1 scaffold_9 . exon 929484 929564 . + . ID=Physo108440.1;Parent=Physo108440;constitutive=1;rank=1 scaffold_9 . CDS 929676 930050 . + 0 ID=Physo108440;Parent=Physo108440;rank=2 scaffold_9 . exon 929676 930050 . + . ID=Physo108440.2;Parent=Physo108440;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 926818 929364 . + . ID=Physo129996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90273;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 926818 929364 . + . ID=Physo129996;Parent=Physo129996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 926818 926926 . + 0 ID=Physo129996;Parent=Physo129996;rank=1 scaffold_9 . exon 926818 926926 . + . ID=Physo129996.1;Parent=Physo129996;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 927001 928244 . + 0 ID=Physo129996;Parent=Physo129996;rank=2 scaffold_9 . exon 927001 928244 . + . ID=Physo129996.2;Parent=Physo129996;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 928290 928706 . + 0 ID=Physo129996;Parent=Physo129996;rank=3 scaffold_9 . exon 928290 928706 . + . ID=Physo129996.3;Parent=Physo129996;constitutive=1;rank=3 scaffold_9 . CDS 928788 928864 . + 0 ID=Physo129996;Parent=Physo129996;rank=4 scaffold_9 . exon 928788 928864 . + . ID=Physo129996.4;Parent=Physo129996;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_9 . CDS 929162 929363 . + 0 ID=Physo129996;Parent=Physo129996;rank=5 scaffold_9 . exon 929162 929364 . + . ID=Physo129996.5;Parent=Physo129996;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_9 ensembl protein_coding_gene 930232 931269 . - . ID=Physo129998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90275;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 930232 931269 . - . ID=Physo129998;Parent=Physo129998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 930232 931269 . - 0 ID=Physo129998;Parent=Physo129998;rank=1 scaffold_9 . exon 930232 931269 . - . ID=Physo129998.1;Parent=Physo129998;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 931692 932951 . + . ID=Physo129999;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90276;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 931692 932951 . + . ID=Physo129999;Parent=Physo129999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 931692 932951 . + 0 ID=Physo129999;Parent=Physo129999;rank=1 scaffold_9 . exon 931692 932951 . + . ID=Physo129999.1;Parent=Physo129999;constitutive=1;rank=1 scaffold_9 . biological_region 932210 932218 0.999 - . logic_name=eponine scaffold_9 . biological_region 932247 932252 0.999 + . logic_name=eponine scaffold_9 . biological_region 932414 932417 0.999 + . logic_name=eponine scaffold_9 . biological_region 932518 932523 0.999 + . logic_name=eponine scaffold_9 . biological_region 936840 936848 0.999 - . logic_name=eponine scaffold_9 . biological_region 936915 936917 0.999 + . logic_name=eponine scaffold_9 . biological_region 937719 937723 0.999 - . logic_name=eponine scaffold_9 . biological_region 941345 941349 0.999 - . logic_name=eponine scaffold_9 . biological_region 941685 941688 0.999 + . logic_name=eponine scaffold_9 ensembl protein_coding_gene 933644 934631 . + . ID=Physo130000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90277;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 933644 934631 . + . ID=Physo130000;Parent=Physo130000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 933644 933986 . + 0 ID=Physo130000;Parent=Physo130000;rank=1 scaffold_9 . exon 933644 933986 . + . ID=Physo130000.1;Parent=Physo130000;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 934073 934409 . + 0 ID=Physo130000;Parent=Physo130000;rank=2 scaffold_9 . exon 934073 934409 . + . ID=Physo130000.2;Parent=Physo130000;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 934526 934631 . + 0 ID=Physo130000;Parent=Physo130000;rank=3 scaffold_9 . exon 934526 934631 . + . ID=Physo130000.3;Parent=Physo130000;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 ensembl protein_coding_gene 941235 942296 . + . ID=Physo130002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90279;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 941235 942296 . + . ID=Physo130002;Parent=Physo130002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 941235 941283 . + . ID=Physo130002.1;Parent=Physo130002;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_9 . exon 941304 941397 . + . ID=Physo130002.2;Parent=Physo130002;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_9 . exon 941469 942296 . + . ID=Physo130002.3;Parent=Physo130002;constitutive=1;ensembl_phase=-1;rank=3 scaffold_9 . CDS 941487 942296 . + 0 ID=Physo130002;Parent=Physo130002;rank=1 scaffold_9 ensembl protein_coding_gene 936653 939087 . + . ID=Physo155970;biotype=protein_coding;external_name=C_scaffold_9000150;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 936653 939087 . + . ID=Physo155970;Parent=Physo155970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 936653 937533 . + 0 ID=Physo155970;Parent=Physo155970;rank=1 scaffold_9 . exon 936653 937533 . + . ID=Physo155970.1;Parent=Physo155970;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 937576 937832 . + 0 ID=Physo155970;Parent=Physo155970;rank=2 scaffold_9 . exon 937576 937832 . + . ID=Physo155970.2;Parent=Physo155970;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 938063 938382 . + 0 ID=Physo155970;Parent=Physo155970;rank=3 scaffold_9 . exon 938063 938382 . + . ID=Physo155970.3;Parent=Physo155970;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 938464 939087 . + 0 ID=Physo155970;Parent=Physo155970;rank=4 scaffold_9 . exon 938464 939087 . + . ID=Physo155970.4;Parent=Physo155970;constitutive=1;rank=4 scaffold_9 . repeat_region 943170 943212 . ? . description=trf scaffold_9 . repeat_region 944071 944106 . ? . description=trf scaffold_9 . repeat_region 945058 945066 . ? . description=dust scaffold_9 . repeat_region 945609 945672 . ? . description=trf scaffold_9 . repeat_region 948126 948133 . ? . description=dust scaffold_9 . repeat_region 949193 949247 . ? . description=trf scaffold_9 . repeat_region 949211 949272 . ? . description=trf scaffold_9 . repeat_region 951654 951667 . ? . description=dust scaffold_9 ensembl protein_coding_gene 950824 951547 . + . ID=Physo130003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90280;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 950824 951547 . + . ID=Physo130003;Parent=Physo130003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 950824 951181 . + 0 ID=Physo130003;Parent=Physo130003;rank=1 scaffold_9 . exon 950824 951181 . + . ID=Physo130003.1;Parent=Physo130003;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 951304 951451 . + 0 ID=Physo130003;Parent=Physo130003;rank=2 scaffold_9 . exon 951304 951451 . + . ID=Physo130003.2;Parent=Physo130003;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 951493 951547 . + 0 ID=Physo130003;Parent=Physo130003;rank=3 scaffold_9 . exon 951493 951547 . + . ID=Physo130003.3;Parent=Physo130003;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 ensembl protein_coding_gene 951740 953101 . - . ID=Physo130004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90281;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 951740 953101 . - . ID=Physo130004;Parent=Physo130004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 951740 953101 . - 0 ID=Physo130004;Parent=Physo130004;rank=1 scaffold_9 . exon 951740 953101 . - . ID=Physo130004.1;Parent=Physo130004;constitutive=1;rank=1 scaffold_9 . biological_region 952069 952069 0.999 - . logic_name=eponine scaffold_9 . biological_region 961812 961816 0.999 - . logic_name=eponine scaffold_9 ensembl protein_coding_gene 961523 963469 . + . ID=Physo130005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90282;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 961523 963469 . + . ID=Physo130005;Parent=Physo130005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 961523 963469 . + 0 ID=Physo130005;Parent=Physo130005;rank=1 scaffold_9 . exon 961523 963469 . + . ID=Physo130005.1;Parent=Physo130005;constitutive=1;rank=1 scaffold_9 . repeat_region 962969 962997 . ? . description=dust scaffold_9 . repeat_region 962969 963001 . ? . description=trf scaffold_9 . repeat_region 964406 964421 . ? . description=dust scaffold_9 . repeat_region 966303 966335 . ? . description=dust scaffold_9 . repeat_region 968010 968023 . ? . description=dust scaffold_9 ensembl protein_coding_gene 964548 966058 . + . ID=Physo130006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90283;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 964548 966058 . + . ID=Physo130006;Parent=Physo130006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 964548 966007 . + 0 ID=Physo130006;Parent=Physo130006;rank=1 scaffold_9 . exon 964548 966007 . + . ID=Physo130006.1;Parent=Physo130006;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 966040 966058 . + 0 ID=Physo130006;Parent=Physo130006;rank=2 scaffold_9 . exon 966040 966058 . + . ID=Physo130006.2;Parent=Physo130006;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 ensembl protein_coding_gene 966444 967736 . - . ID=Physo130007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90284;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 966444 967736 . - . ID=Physo130007;Parent=Physo130007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 966444 967736 . - 0 ID=Physo130007;Parent=Physo130007;rank=1 scaffold_9 . exon 966444 967736 . - . ID=Physo130007.1;Parent=Physo130007;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 969990 972303 . + . ID=Physo130008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90285;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 969990 972303 . + . ID=Physo130008;Parent=Physo130008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 969990 970574 . + 0 ID=Physo130008;Parent=Physo130008;rank=1 scaffold_9 . exon 969990 970574 . + . ID=Physo130008.1;Parent=Physo130008;constitutive=1;rank=1 scaffold_9 . CDS 970720 971045 . + 0 ID=Physo130008;Parent=Physo130008;rank=2 scaffold_9 . exon 970720 971045 . + . ID=Physo130008.2;Parent=Physo130008;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 971409 971917 . + 0 ID=Physo130008;Parent=Physo130008;rank=3 scaffold_9 . exon 971409 971917 . + . ID=Physo130008.3;Parent=Physo130008;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 972013 972192 . + 0 ID=Physo130008;Parent=Physo130008;rank=4 scaffold_9 . CDS 972251 972303 . + 0 ID=Physo130008;Parent=Physo130008;rank=5 scaffold_9 . biological_region 980475 980476 0.999 - . logic_name=eponine scaffold_9 . exon 972013 972192 . + . ID=Physo130008.4;Parent=Physo130008;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . exon 972251 972303 . + . ID=Physo130008.5;Parent=Physo130008;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 ensembl protein_coding_gene 972445 973407 . + . ID=Physo130009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90286;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 972445 973407 . + . ID=Physo130009;Parent=Physo130009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 972445 973407 . + 0 ID=Physo130009;Parent=Physo130009;rank=1 scaffold_9 . exon 972445 973407 . + . ID=Physo130009.1;Parent=Physo130009;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 974406 974834 . + . ID=Physo155973;biotype=protein_coding;external_name=C_scaffold_9000153;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 974406 974834 . + . ID=Physo155973;Parent=Physo155973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 974406 974834 . + 0 ID=Physo155973;Parent=Physo155973;rank=1 scaffold_9 . exon 974406 974834 . + . ID=Physo155973.1;Parent=Physo155973;constitutive=1;rank=1 scaffold_9 . repeat_region 983494 983502 . ? . description=dust scaffold_9 . repeat_region 984300 984340 . ? . description=trf scaffold_9 . repeat_region 984883 984891 . ? . description=dust scaffold_9 . repeat_region 985583 985633 . ? . description=trf scaffold_9 . repeat_region 985586 985661 . ? . description=trf scaffold_9 . repeat_region 985668 985742 . ? . description=trf scaffold_9 . repeat_region 985696 985736 . ? . description=trf scaffold_9 . repeat_region 991002 991085 . ? . description=trf scaffold_9 ensembl protein_coding_gene 985144 986279 . + . ID=Physo130011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90288;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 985144 986279 . + . ID=Physo130011;Parent=Physo130011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 985144 985160 . + 0 ID=Physo130011;Parent=Physo130011;rank=1 scaffold_9 . exon 985144 985160 . + . ID=Physo130011.1;Parent=Physo130011;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 985319 985464 . + 0 ID=Physo130011;Parent=Physo130011;rank=2 scaffold_9 . exon 985319 985464 . + . ID=Physo130011.2;Parent=Physo130011;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 985563 985818 . + 0 ID=Physo130011;Parent=Physo130011;rank=3 scaffold_9 . exon 985563 985818 . + . ID=Physo130011.3;Parent=Physo130011;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_9 . CDS 985868 986279 . + 0 ID=Physo130011;Parent=Physo130011;rank=4 scaffold_9 . exon 985868 986279 . + . ID=Physo130011.4;Parent=Physo130011;constitutive=1;ensembl_phase=2;rank=4 scaffold_9 ensembl protein_coding_gene 986910 994600 . - . ID=Physo130012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90289;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 986910 994600 . - . ID=Physo130012;Parent=Physo130012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 986910 987722 . - 0 ID=Physo130012;Parent=Physo130012;rank=8 scaffold_9 . exon 986910 987722 . - . ID=Physo130012.8;Parent=Physo130012;constitutive=1;rank=8 scaffold_9 . CDS 987789 990022 . - 0 ID=Physo130012;Parent=Physo130012;rank=7 scaffold_9 . exon 987789 990022 . - . ID=Physo130012.7;Parent=Physo130012;constitutive=1;ensembl_phase=1;rank=7 scaffold_9 . CDS 990222 990523 . - 0 ID=Physo130012;Parent=Physo130012;rank=6 scaffold_9 . exon 990222 990523 . - . ID=Physo130012.6;Parent=Physo130012;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_9 . CDS 990667 992200 . - 0 ID=Physo130012;Parent=Physo130012;rank=5 scaffold_9 . exon 990667 992200 . - . ID=Physo130012.5;Parent=Physo130012;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_9 . CDS 992559 992901 . - 0 ID=Physo130012;Parent=Physo130012;rank=4 scaffold_9 . CDS 992967 993206 . - 0 ID=Physo130012;Parent=Physo130012;rank=3 scaffold_9 . CDS 993345 993449 . - 0 ID=Physo130012;Parent=Physo130012;rank=2 scaffold_9 . CDS 993479 994600 . - 0 ID=Physo130012;Parent=Physo130012;rank=1 scaffold_9 . biological_region 992117 992125 0.999 + . logic_name=eponine scaffold_9 . biological_region 992633 992636 0.999 + . logic_name=eponine scaffold_9 . biological_region 992641 992642 0.999 - . logic_name=eponine scaffold_9 . biological_region 992676 992684 0.999 + . logic_name=eponine scaffold_9 . biological_region 992725 992728 0.999 - . logic_name=eponine scaffold_9 . biological_region 992772 992775 0.999 - . logic_name=eponine scaffold_9 . biological_region 993361 993365 0.999 + . logic_name=eponine scaffold_9 . biological_region 994792 994798 0.999 + . logic_name=eponine scaffold_9 . biological_region 995008 995021 0.999 + . logic_name=eponine scaffold_9 . biological_region 995045 995045 0.999 + . logic_name=eponine scaffold_9 . biological_region 995048 995050 0.999 - . logic_name=eponine scaffold_9 . exon 992559 992901 . - . ID=Physo130012.4;Parent=Physo130012;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_9 . exon 992967 993206 . - . ID=Physo130012.3;Parent=Physo130012;constitutive=1;rank=3 scaffold_9 . exon 993345 993449 . - . ID=Physo130012.2;Parent=Physo130012;constitutive=1;rank=2 scaffold_9 . exon 993479 994600 . - . ID=Physo130012.1;Parent=Physo130012;constitutive=1;rank=1 scaffold_9 . repeat_region 1004708 1004715 . ? . description=dust scaffold_9 . repeat_region 1012052 1012167 . ? . description=trf scaffold_9 . biological_region 1012278 1012285 0.999 + . logic_name=eponine scaffold_9 . biological_region 1012942 1012943 0.999 + . logic_name=eponine scaffold_9 . repeat_region 1014352 1014487 . ? . description=trf scaffold_9 . biological_region 1014464 1014467 0.999 + . logic_name=eponine scaffold_9 . biological_region 1014598 1014599 0.999 + . logic_name=eponine scaffold_9 . biological_region 1015307 1015309 0.999 - . logic_name=eponine scaffold_9 . repeat_region 1020637 1020678 . ? . description=trf scaffold_9 ensembl protein_coding_gene 1017222 1019473 . + . ID=Physo108441;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_90037;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1017222 1019473 . + . ID=Physo108441;Parent=Physo108441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1017222 1018040 . + 0 ID=Physo108441;Parent=Physo108441;rank=1 scaffold_9 . exon 1017222 1018040 . + . ID=Physo108441.1;Parent=Physo108441;constitutive=1;rank=1 scaffold_9 . CDS 1019459 1019473 . + 0 ID=Physo108441;Parent=Physo108441;rank=2 scaffold_9 . exon 1019459 1019473 . + . ID=Physo108441.2;Parent=Physo108441;constitutive=1;rank=2 scaffold_9 ensembl protein_coding_gene 1012200 1017119 . + . ID=Physo130013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90290;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1012200 1017119 . + . ID=Physo130013;Parent=Physo130013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1012200 1012868 . + 0 ID=Physo130013;Parent=Physo130013;rank=1 scaffold_9 . exon 1012200 1012868 . + . ID=Physo130013.1;Parent=Physo130013;constitutive=1;rank=1 scaffold_9 . CDS 1012897 1014051 . + 0 ID=Physo130013;Parent=Physo130013;rank=2 scaffold_9 . exon 1012897 1014051 . + . ID=Physo130013.2;Parent=Physo130013;constitutive=1;rank=2 scaffold_9 . CDS 1014425 1015695 . + 0 ID=Physo130013;Parent=Physo130013;rank=3 scaffold_9 . exon 1014425 1015695 . + . ID=Physo130013.3;Parent=Physo130013;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_9 . CDS 1015828 1015968 . + 0 ID=Physo130013;Parent=Physo130013;rank=4 scaffold_9 . exon 1015828 1015968 . + . ID=Physo130013.4;Parent=Physo130013;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_9 . CDS 1016381 1017119 . + 0 ID=Physo130013;Parent=Physo130013;rank=5 scaffold_9 . exon 1016381 1017119 . + . ID=Physo130013.5;Parent=Physo130013;constitutive=1;ensembl_phase=2;rank=5 scaffold_9 ensembl protein_coding_gene 1019577 1020305 . + . ID=Physo130015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90292;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1019577 1020305 . + . ID=Physo130015;Parent=Physo130015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1019577 1020305 . + 0 ID=Physo130015;Parent=Physo130015;rank=1 scaffold_9 . exon 1019577 1020305 . + . ID=Physo130015.1;Parent=Physo130015;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1020504 1022100 . - . ID=Physo130016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90293;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1020504 1022100 . - . ID=Physo130016;Parent=Physo130016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1020504 1021030 . - 0 ID=Physo130016;Parent=Physo130016;rank=3 scaffold_9 . exon 1020504 1021030 . - . ID=Physo130016.3;Parent=Physo130016;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . CDS 1021261 1021677 . - 0 ID=Physo130016;Parent=Physo130016;rank=2 scaffold_9 . exon 1021261 1021677 . - . ID=Physo130016.2;Parent=Physo130016;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 1021767 1022100 . - 0 ID=Physo130016;Parent=Physo130016;rank=1 scaffold_9 . repeat_region 1029298 1029341 . ? . description=dust scaffold_9 . exon 1021767 1022100 . - . ID=Physo130016.1;Parent=Physo130016;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 1022758 1023648 . + . ID=Physo130017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90294;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1022758 1023648 . + . ID=Physo130017;Parent=Physo130017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1022758 1023648 . + 0 ID=Physo130017;Parent=Physo130017;rank=1 scaffold_9 . exon 1022758 1023648 . + . ID=Physo130017.1;Parent=Physo130017;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1025701 1027687 . - . ID=Physo130018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90295;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1025701 1027687 . - . ID=Physo130018;Parent=Physo130018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1025701 1025828 . - 0 ID=Physo130018;Parent=Physo130018;rank=4 scaffold_9 . exon 1025701 1025828 . - . ID=Physo130018.4;Parent=Physo130018;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 1025874 1027129 . - 0 ID=Physo130018;Parent=Physo130018;rank=3 scaffold_9 . exon 1025874 1027129 . - . ID=Physo130018.3;Parent=Physo130018;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 1027218 1027302 . - 0 ID=Physo130018;Parent=Physo130018;rank=2 scaffold_9 . exon 1027218 1027302 . - . ID=Physo130018.2;Parent=Physo130018;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 1027381 1027633 . - 0 ID=Physo130018;Parent=Physo130018;rank=1 scaffold_9 . exon 1027381 1027687 . - . ID=Physo130018.1;Parent=Physo130018;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 1028133 1028936 . + . ID=Physo130019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90296;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1028133 1028936 . + . ID=Physo130019;Parent=Physo130019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1028133 1028936 . + 0 ID=Physo130019;Parent=Physo130019;rank=1 scaffold_9 . exon 1028133 1028936 . + . ID=Physo130019.1;Parent=Physo130019;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1028969 1029584 . - . ID=Physo130020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90297;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1028969 1029584 . - . ID=Physo130020;Parent=Physo130020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1028969 1029577 . - 0 ID=Physo130020;Parent=Physo130020;rank=1 scaffold_9 . exon 1028969 1029584 . - . ID=Physo130020.1;Parent=Physo130020;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 1029737 1031191 . + . ID=Physo130021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90298;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1029737 1031191 . + . ID=Physo130021;Parent=Physo130021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1029737 1029975 . + 0 ID=Physo130021;Parent=Physo130021;rank=1 scaffold_9 . exon 1029737 1029975 . + . ID=Physo130021.1;Parent=Physo130021;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 1030059 1030373 . + 0 ID=Physo130021;Parent=Physo130021;rank=2 scaffold_9 . exon 1030059 1030373 . + . ID=Physo130021.2;Parent=Physo130021;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_9 . CDS 1030458 1031004 . + 0 ID=Physo130021;Parent=Physo130021;rank=3 scaffold_9 . exon 1030458 1031004 . + . ID=Physo130021.3;Parent=Physo130021;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 1031105 1031191 . + 0 ID=Physo130021;Parent=Physo130021;rank=4 scaffold_9 . exon 1031105 1031191 . + . ID=Physo130021.4;Parent=Physo130021;constitutive=1;rank=4 scaffold_9 . biological_region 1035985 1035987 0.999 + . logic_name=eponine scaffold_9 . biological_region 1036963 1036966 0.999 - . logic_name=eponine scaffold_9 . biological_region 1037020 1037020 0.999 - . logic_name=eponine scaffold_9 . biological_region 1037121 1037123 0.999 - . logic_name=eponine scaffold_9 . biological_region 1037339 1037345 0.999 - . logic_name=eponine scaffold_9 . repeat_region 1040121 1040160 . ? . description=trf scaffold_9 ensembl protein_coding_gene 1033614 1034902 . - . ID=Physo130022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90299;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1033614 1034902 . - . ID=Physo130022;Parent=Physo130022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1033614 1033618 . - 0 ID=Physo130022;Parent=Physo130022;rank=4 scaffold_9 . exon 1033614 1033618 . - . ID=Physo130022.4;Parent=Physo130022;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 1033984 1034204 . - 0 ID=Physo130022;Parent=Physo130022;rank=3 scaffold_9 . exon 1033984 1034204 . - . ID=Physo130022.3;Parent=Physo130022;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 1034264 1034694 . - 0 ID=Physo130022;Parent=Physo130022;rank=2 scaffold_9 . exon 1034264 1034694 . - . ID=Physo130022.2;Parent=Physo130022;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 1034770 1034790 . - 0 ID=Physo130022;Parent=Physo130022;rank=1 scaffold_9 . exon 1034770 1034902 . - . ID=Physo130022.1;Parent=Physo130022;constitutive=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 1036148 1037371 . - . ID=Physo130023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90300;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1036148 1037371 . - . ID=Physo130023;Parent=Physo130023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 1036148 1036672 . - . ID=Physo130023.3;Parent=Physo130023;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_9 . CDS 1036339 1036672 . - 0 ID=Physo130023;Parent=Physo130023;rank=3 scaffold_9 . CDS 1036767 1036830 . - 0 ID=Physo130023;Parent=Physo130023;rank=2 scaffold_9 . exon 1036767 1036830 . - . ID=Physo130023.2;Parent=Physo130023;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_9 . CDS 1037142 1037214 . - 0 ID=Physo130023;Parent=Physo130023;rank=1 scaffold_9 . exon 1037142 1037371 . - . ID=Physo130023.1;Parent=Physo130023;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 1038224 1040257 . - . ID=Physo130024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90301;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1038224 1040257 . - . ID=Physo130024;Parent=Physo130024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1038224 1040257 . - 0 ID=Physo130024;Parent=Physo130024;rank=1 scaffold_9 . exon 1038224 1040257 . - . ID=Physo130024.1;Parent=Physo130024;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1041217 1041594 . + . ID=Physo130025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90302;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1041217 1041594 . + . ID=Physo130025;Parent=Physo130025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1041217 1041594 . + 0 ID=Physo130025;Parent=Physo130025;rank=1 scaffold_9 . exon 1041217 1041594 . + . ID=Physo130025.1;Parent=Physo130025;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1042342 1043798 . + . ID=Physo130026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90303;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1042342 1043798 . + . ID=Physo130026;Parent=Physo130026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1042342 1042590 . + 0 ID=Physo130026;Parent=Physo130026;rank=1 scaffold_9 . exon 1042342 1042590 . + . ID=Physo130026.1;Parent=Physo130026;constitutive=1;rank=1 scaffold_9 . CDS 1042658 1042711 . + 0 ID=Physo130026;Parent=Physo130026;rank=2 scaffold_9 . exon 1042658 1042711 . + . ID=Physo130026.2;Parent=Physo130026;constitutive=1;rank=2 scaffold_9 . CDS 1042798 1042848 . + 0 ID=Physo130026;Parent=Physo130026;rank=3 scaffold_9 . exon 1042798 1042848 . + . ID=Physo130026.3;Parent=Physo130026;constitutive=1;rank=3 scaffold_9 . CDS 1042932 1043798 . + 0 ID=Physo130026;Parent=Physo130026;rank=4 scaffold_9 . exon 1042932 1043798 . + . ID=Physo130026.4;Parent=Physo130026;constitutive=1;rank=4 scaffold_9 ensembl protein_coding_gene 1043892 1046736 . + . ID=Physo130027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90304;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1043892 1046736 . + . ID=Physo130027;Parent=Physo130027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1043892 1044507 . + 0 ID=Physo130027;Parent=Physo130027;rank=1 scaffold_9 . exon 1043892 1044507 . + . ID=Physo130027.1;Parent=Physo130027;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . CDS 1044590 1046736 . + 0 ID=Physo130027;Parent=Physo130027;rank=2 scaffold_9 . exon 1044590 1046736 . + . ID=Physo130027.2;Parent=Physo130027;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 ensembl protein_coding_gene 1046819 1047647 . - . ID=Physo130028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90305;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1046819 1047647 . - . ID=Physo130028;Parent=Physo130028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1046819 1046920 . - 0 ID=Physo130028;Parent=Physo130028;rank=3 scaffold_9 . exon 1046819 1046920 . - . ID=Physo130028.3;Parent=Physo130028;constitutive=1;rank=3 scaffold_9 . CDS 1046940 1047312 . - 0 ID=Physo130028;Parent=Physo130028;rank=2 scaffold_9 . exon 1046940 1047312 . - . ID=Physo130028.2;Parent=Physo130028;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 1047399 1047622 . - 0 ID=Physo130028;Parent=Physo130028;rank=1 scaffold_9 . exon 1047399 1047647 . - . ID=Physo130028.1;Parent=Physo130028;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_9 ensembl protein_coding_gene 1049376 1050829 . - . ID=Physo130029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90306;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1049376 1050829 . - . ID=Physo130029;Parent=Physo130029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1049376 1049626 . - 0 ID=Physo130029;Parent=Physo130029;rank=5 scaffold_9 . exon 1049376 1049626 . - . ID=Physo130029.5;Parent=Physo130029;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 1049726 1049953 . - 0 ID=Physo130029;Parent=Physo130029;rank=4 scaffold_9 . exon 1049726 1049953 . - . ID=Physo130029.4;Parent=Physo130029;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 1049975 1050044 . - 0 ID=Physo130029;Parent=Physo130029;rank=3 scaffold_9 . exon 1049975 1050044 . - . ID=Physo130029.3;Parent=Physo130029;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 1050125 1050357 . - 0 ID=Physo130029;Parent=Physo130029;rank=2 scaffold_9 . exon 1050125 1050357 . - . ID=Physo130029.2;Parent=Physo130029;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 1050445 1050829 . - 0 ID=Physo130029;Parent=Physo130029;rank=1 scaffold_9 . exon 1050445 1050829 . - . ID=Physo130029.1;Parent=Physo130029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 . repeat_region 1051883 1051890 . ? . description=dust scaffold_9 . biological_region 1052438 1052438 0.999 + . logic_name=eponine scaffold_9 . biological_region 1052494 1052499 0.999 - . logic_name=eponine scaffold_9 . biological_region 1052514 1052519 0.999 - . logic_name=eponine scaffold_9 . biological_region 1053693 1053700 0.999 + . logic_name=eponine scaffold_9 . biological_region 1054972 1054975 0.999 + . logic_name=eponine scaffold_9 . biological_region 1055008 1055011 0.999 + . logic_name=eponine scaffold_9 . repeat_region 1055033 1055330 . ? . description=trf scaffold_9 . repeat_region 1055033 1055330 . ? . description=trf scaffold_9 . repeat_region 1055035 1055321 . ? . description=trf scaffold_9 . repeat_region 1058662 1058669 . ? . description=dust scaffold_9 . repeat_region 1059062 1059093 . ? . description=trf scaffold_9 . repeat_region 1059868 1059942 . ? . description=trf scaffold_9 . repeat_region 1059868 1059943 . ? . description=trf scaffold_9 . repeat_region 1060090 1060262 . ? . description=trf scaffold_9 . repeat_region 1060090 1060264 . ? . description=trf scaffold_9 ensembl protein_coding_gene 1053669 1054516 . - . ID=Physo130030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90307;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1053669 1054516 . - . ID=Physo130030;Parent=Physo130030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1053669 1053725 . - 0 ID=Physo130030;Parent=Physo130030;rank=2 scaffold_9 . exon 1053669 1053725 . - . ID=Physo130030.2;Parent=Physo130030;constitutive=1;rank=2 scaffold_9 . CDS 1053746 1054516 . - 0 ID=Physo130030;Parent=Physo130030;rank=1 scaffold_9 . exon 1053746 1054516 . - . ID=Physo130030.1;Parent=Physo130030;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1054944 1055939 . - . ID=Physo130031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90308;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1054944 1055939 . - . ID=Physo130031;Parent=Physo130031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1054944 1055939 . - 0 ID=Physo130031;Parent=Physo130031;rank=1 scaffold_9 . exon 1054944 1055939 . - . ID=Physo130031.1;Parent=Physo130031;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1059661 1060293 . - . ID=Physo130032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90309;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1059661 1060293 . - . ID=Physo130032;Parent=Physo130032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . exon 1059661 1059966 . - . ID=Physo130032.3;Parent=Physo130032;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_9 . CDS 1059784 1059966 . - 0 ID=Physo130032;Parent=Physo130032;rank=3 scaffold_9 . CDS 1060034 1060151 . - 0 ID=Physo130032;Parent=Physo130032;rank=2 scaffold_9 . exon 1060034 1060151 . - . ID=Physo130032.2;Parent=Physo130032;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 1060175 1060293 . - 0 ID=Physo130032;Parent=Physo130032;rank=1 scaffold_9 . exon 1060175 1060293 . - . ID=Physo130032.1;Parent=Physo130032;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 ensembl protein_coding_gene 1062763 1063596 . - . ID=Physo130033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90310;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1062763 1063596 . - . ID=Physo130033;Parent=Physo130033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1062763 1063596 . - 0 ID=Physo130033;Parent=Physo130033;rank=1 scaffold_9 . exon 1062763 1063596 . - . ID=Physo130033.1;Parent=Physo130033;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1064438 1066061 . - . ID=Physo130034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90311;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1064438 1066061 . - . ID=Physo130034;Parent=Physo130034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1064438 1065146 . - 0 ID=Physo130034;Parent=Physo130034;rank=3 scaffold_9 . exon 1064438 1065146 . - . ID=Physo130034.3;Parent=Physo130034;constitutive=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 1065245 1065792 . - 0 ID=Physo130034;Parent=Physo130034;rank=2 scaffold_9 . exon 1065245 1065792 . - . ID=Physo130034.2;Parent=Physo130034;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 1065813 1066061 . - 0 ID=Physo130034;Parent=Physo130034;rank=1 scaffold_9 . exon 1065813 1066061 . - . ID=Physo130034.1;Parent=Physo130034;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1067075 1068037 . - . ID=Physo130035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90312;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1067075 1068037 . - . ID=Physo130035;Parent=Physo130035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1067075 1068037 . - 0 ID=Physo130035;Parent=Physo130035;rank=1 scaffold_9 . exon 1067075 1068037 . - . ID=Physo130035.1;Parent=Physo130035;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1070175 1071288 . + . ID=Physo155977;biotype=protein_coding;external_name=C_scaffold_9000157;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1070175 1071288 . + . ID=Physo155977;Parent=Physo155977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1070175 1070317 . + 0 ID=Physo155977;Parent=Physo155977;rank=1 scaffold_9 . exon 1070175 1070317 . + . ID=Physo155977.1;Parent=Physo155977;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_9 . CDS 1070429 1070651 . + 0 ID=Physo155977;Parent=Physo155977;rank=2 scaffold_9 . exon 1070429 1070651 . + . ID=Physo155977.2;Parent=Physo155977;constitutive=1;ensembl_phase=2;rank=2 scaffold_9 . CDS 1070727 1070940 . + 0 ID=Physo155977;Parent=Physo155977;rank=3 scaffold_9 . exon 1070727 1070940 . + . ID=Physo155977.3;Parent=Physo155977;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_9 . CDS 1071020 1071288 . + 0 ID=Physo155977;Parent=Physo155977;rank=4 scaffold_9 . repeat_region 1071353 1071360 . ? . description=dust scaffold_9 . biological_region 1078217 1078220 0.999 - . logic_name=eponine scaffold_9 . repeat_region 1079197 1079221 . ? . description=dust scaffold_9 . biological_region 1079287 1079288 0.999 - . logic_name=eponine scaffold_9 . biological_region 1079341 1079346 0.999 - . logic_name=eponine scaffold_9 . biological_region 1079345 1079349 0.999 + . logic_name=eponine scaffold_9 . repeat_region 1080477 1080546 . ? . description=trf scaffold_9 . repeat_region 1080504 1080546 . ? . description=trf scaffold_9 . repeat_region 1080820 1080877 . ? . description=dust scaffold_9 . repeat_region 1080824 1080873 . ? . description=trf scaffold_9 ensembl protein_coding_gene 1074908 1076398 . - . ID=Physo130038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90315;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1074908 1076398 . - . ID=Physo130038;Parent=Physo130038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1074908 1076398 . - 0 ID=Physo130038;Parent=Physo130038;rank=1 scaffold_9 . exon 1074908 1076398 . - . ID=Physo130038.1;Parent=Physo130038;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1077628 1079493 . - . ID=Physo130039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90316;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1077628 1079493 . - . ID=Physo130039;Parent=Physo130039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1077628 1078934 . - 0 ID=Physo130039;Parent=Physo130039;rank=2 scaffold_9 . exon 1077628 1078934 . - . ID=Physo130039.2;Parent=Physo130039;constitutive=1;ensembl_phase=1;rank=2 scaffold_9 . CDS 1079016 1079493 . - 0 ID=Physo130039;Parent=Physo130039;rank=1 scaffold_9 . exon 1079016 1079493 . - . ID=Physo130039.1;Parent=Physo130039;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_9 ensembl protein_coding_gene 1080419 1083370 . + . ID=Physo130040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90317;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1080419 1083370 . + . ID=Physo130040;Parent=Physo130040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1080419 1083370 . + 0 ID=Physo130040;Parent=Physo130040;rank=1 scaffold_9 . exon 1080419 1083370 . + . ID=Physo130040.1;Parent=Physo130040;constitutive=1;rank=1 scaffold_9 . exon 1071020 1071288 . + . ID=Physo155977.4;Parent=Physo155977;constitutive=1;ensembl_phase=1;rank=4 scaffold_9 ensembl protein_coding_gene 1071782 1073122 . - . ID=Physo155978;biotype=protein_coding;external_name=C_scaffold_9000158;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1071782 1073122 . - . ID=Physo155978;Parent=Physo155978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1071782 1072020 . - 0 ID=Physo155978;Parent=Physo155978;rank=5 scaffold_9 . exon 1071782 1072020 . - . ID=Physo155978.5;Parent=Physo155978;constitutive=1;ensembl_phase=1;rank=5 scaffold_9 . CDS 1072344 1072376 . - 0 ID=Physo155978;Parent=Physo155978;rank=4 scaffold_9 . exon 1072344 1072376 . - . ID=Physo155978.4;Parent=Physo155978;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_9 . CDS 1072469 1072542 . - 0 ID=Physo155978;Parent=Physo155978;rank=3 scaffold_9 . exon 1072469 1072542 . - . ID=Physo155978.3;Parent=Physo155978;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_9 . CDS 1072585 1072676 . - 0 ID=Physo155978;Parent=Physo155978;rank=2 scaffold_9 . exon 1072585 1072676 . - . ID=Physo155978.2;Parent=Physo155978;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_9 . CDS 1072751 1073122 . - 0 ID=Physo155978;Parent=Physo155978;rank=1 scaffold_9 . exon 1072751 1073122 . - . ID=Physo155978.1;Parent=Physo155978;constitutive=1;rank=1 scaffold_9 . repeat_region 1081337 1081519 . + . description=(CAG)n scaffold_9 ensembl protein_coding_gene 1083564 1084139 . - . ID=Physo130041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90318;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1083564 1084139 . - . ID=Physo130041;Parent=Physo130041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1083564 1083665 . - 0 ID=Physo130041;Parent=Physo130041;rank=3 scaffold_9 . exon 1083564 1083665 . - . ID=Physo130041.3;Parent=Physo130041;constitutive=1;rank=3 scaffold_9 . CDS 1083740 1084045 . - 0 ID=Physo130041;Parent=Physo130041;rank=2 scaffold_9 . exon 1083740 1084045 . - . ID=Physo130041.2;Parent=Physo130041;constitutive=1;rank=2 scaffold_9 . CDS 1084083 1084139 . - 0 ID=Physo130041;Parent=Physo130041;rank=1 scaffold_9 . exon 1084083 1084139 . - . ID=Physo130041.1;Parent=Physo130041;constitutive=1;rank=1 scaffold_9 ensembl protein_coding_gene 1087271 1088343 . + . ID=Physo130042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_90319;logic_name=jgi_physo1_1 scaffold_9 ensembl transcript 1087271 1088343 . + . ID=Physo130042;Parent=Physo130042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_9 . CDS 1087271 1087519 . + 0 ID=Physo130042;Parent=Physo130042;rank=1 scaffold_9 . exon 1087271 1087519 . + . ID=Physo130042.1;Parent=Physo130042;constitutive=1;rank=1 scaffold_9 . CDS 1087596 1087995 . + 0 ID=Physo130042;Parent=Physo130042;rank=2 scaffold_9 . exon 1087596 1087995 . + . ID=Physo130042.2;Parent=Physo130042;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_9 . CDS 1088108 1088343 . + 0 ID=Physo130042;Parent=Physo130042;rank=3 scaffold_9 . exon 1088108 1088343 . + . ID=Physo130042.3;Parent=Physo130042;constitutive=1;ensembl_phase=1;rank=3 scaffold_9 . repeat_region 1089408 1099283 . ? . description=dust scaffold_9 . repeat_region 1099284 1100163 . + . description=Polinton-1_PI ##gff-version 3 ##sequence-region scaffold_8 1 1111959 scaffold_8 . repeat_region 6160 6167 . ? . description=dust scaffold_8 . repeat_region 6214 6230 . ? . description=dust scaffold_8 . biological_region 8115 8122 0.999 + . logic_name=eponine scaffold_8 . biological_region 8140 8149 0.999 - . logic_name=eponine scaffold_8 . biological_region 8161 8169 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 4168 5187 . - . ID=Physo129490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80001;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 4168 5187 . - . ID=Physo129490;Parent=Physo129490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 4168 5187 . - 0 ID=Physo129490;Parent=Physo129490;rank=1 scaffold_8 . exon 4168 5187 . - . ID=Physo129490.1;Parent=Physo129490;constitutive=1;rank=1 scaffold_8 . repeat_region 19748 19787 . ? . description=trf scaffold_8 ensembl protein_coding_gene 12635 13345 . + . ID=Physo129491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80002;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 12635 13345 . + . ID=Physo129491;Parent=Physo129491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 12635 13345 . + 0 ID=Physo129491;Parent=Physo129491;rank=1 scaffold_8 . exon 12635 13345 . + . ID=Physo129491.1;Parent=Physo129491;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 18169 20271 . - . ID=Physo129492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80003;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 18169 20271 . - . ID=Physo129492;Parent=Physo129492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 18169 20271 . - . ID=Physo129492.1;Parent=Physo129492;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 . CDS 18424 20271 . - 0 ID=Physo129492;Parent=Physo129492;rank=1 scaffold_8 . biological_region 20104 20107 0.999 + . logic_name=eponine scaffold_8 . biological_region 20136 20141 0.999 + . logic_name=eponine scaffold_8 . biological_region 20182 20188 0.999 - . logic_name=eponine scaffold_8 . biological_region 20202 20203 0.999 + . logic_name=eponine scaffold_8 . biological_region 20270 20276 0.999 - . logic_name=eponine scaffold_8 . biological_region 20905 20908 0.999 - . logic_name=eponine scaffold_8 . biological_region 20954 20957 0.999 - . logic_name=eponine scaffold_8 . biological_region 20988 20993 0.999 + . logic_name=eponine scaffold_8 . biological_region 21011 21011 0.999 + . logic_name=eponine scaffold_8 . biological_region 21076 21078 0.999 - . logic_name=eponine scaffold_8 . biological_region 23104 23106 0.999 + . logic_name=eponine scaffold_8 . biological_region 23127 23130 0.999 + . logic_name=eponine scaffold_8 . biological_region 23197 23199 0.999 - . logic_name=eponine scaffold_8 . biological_region 23211 23216 0.999 + . logic_name=eponine scaffold_8 . biological_region 24347 24350 0.999 + . logic_name=eponine scaffold_8 . repeat_region 28765 28775 . ? . description=dust scaffold_8 ensembl protein_coding_gene 22171 23383 . - . ID=Physo129493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80004;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 22171 23383 . - . ID=Physo129493;Parent=Physo129493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 22171 22501 . - 0 ID=Physo129493;Parent=Physo129493;rank=4 scaffold_8 . exon 22171 22501 . - . ID=Physo129493.4;Parent=Physo129493;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 22582 22644 . - 0 ID=Physo129493;Parent=Physo129493;rank=3 scaffold_8 . exon 22582 22644 . - . ID=Physo129493.3;Parent=Physo129493;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_8 . CDS 22724 22787 . - 0 ID=Physo129493;Parent=Physo129493;rank=2 scaffold_8 . exon 22724 22787 . - . ID=Physo129493.2;Parent=Physo129493;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 22858 23383 . - 0 ID=Physo129493;Parent=Physo129493;rank=1 scaffold_8 . exon 22858 23383 . - . ID=Physo129493.1;Parent=Physo129493;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 26088 27694 . - . ID=Physo129494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80005;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 26088 27694 . - . ID=Physo129494;Parent=Physo129494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 26088 26497 . - 0 ID=Physo129494;Parent=Physo129494;rank=3 scaffold_8 . exon 26088 26497 . - . ID=Physo129494.3;Parent=Physo129494;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 26571 27499 . - 0 ID=Physo129494;Parent=Physo129494;rank=2 scaffold_8 . exon 26571 27499 . - . ID=Physo129494.2;Parent=Physo129494;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 27579 27694 . - 0 ID=Physo129494;Parent=Physo129494;rank=1 scaffold_8 . exon 27579 27694 . - . ID=Physo129494.1;Parent=Physo129494;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . repeat_region 33815 36165 . - . description=GypsyPi-1c_I-int scaffold_8 . repeat_region 36780 36955 . ? . description=trf scaffold_8 . repeat_region 36864 36926 . ? . description=trf scaffold_8 . repeat_region 37024 37045 . ? . description=trf scaffold_8 . repeat_region 39329 39350 . ? . description=trf scaffold_8 . repeat_region 39524 39544 . ? . description=trf scaffold_8 ensembl protein_coding_gene 32701 38534 . - . ID=Physo129495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80006;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 32701 38534 . - . ID=Physo129495;Parent=Physo129495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 32701 32886 . - 0 ID=Physo129495;Parent=Physo129495;rank=7 scaffold_8 . exon 32701 32886 . - . ID=Physo129495.7;Parent=Physo129495;constitutive=1;rank=7 scaffold_8 . CDS 32906 34303 . - 0 ID=Physo129495;Parent=Physo129495;rank=6 scaffold_8 . exon 32906 34303 . - . ID=Physo129495.6;Parent=Physo129495;constitutive=1;rank=6 scaffold_8 . CDS 34388 35148 . - 0 ID=Physo129495;Parent=Physo129495;rank=5 scaffold_8 . exon 34388 35148 . - . ID=Physo129495.5;Parent=Physo129495;constitutive=1;ensembl_phase=1;rank=5 scaffold_8 . CDS 35250 35562 . - 0 ID=Physo129495;Parent=Physo129495;rank=4 scaffold_8 . exon 35250 35562 . - . ID=Physo129495.4;Parent=Physo129495;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_8 . CDS 35597 37143 . - 0 ID=Physo129495;Parent=Physo129495;rank=3 scaffold_8 . exon 35597 37143 . - . ID=Physo129495.3;Parent=Physo129495;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 37179 37478 . - 0 ID=Physo129495;Parent=Physo129495;rank=2 scaffold_8 . exon 37179 37478 . - . ID=Physo129495.2;Parent=Physo129495;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 37808 38534 . - 0 ID=Physo129495;Parent=Physo129495;rank=1 scaffold_8 . exon 37808 38534 . - . ID=Physo129495.1;Parent=Physo129495;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . repeat_region 45070 45082 . ? . description=dust scaffold_8 . biological_region 46606 46609 0.999 - . logic_name=eponine scaffold_8 . biological_region 47408 47411 0.999 + . logic_name=eponine scaffold_8 . biological_region 49000 49001 0.999 + . logic_name=eponine scaffold_8 . biological_region 49197 49199 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 45676 47913 . + . ID=Physo129496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80007;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 45676 47913 . + . ID=Physo129496;Parent=Physo129496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 45676 46506 . + 0 ID=Physo129496;Parent=Physo129496;rank=1 scaffold_8 . exon 45676 46506 . + . ID=Physo129496.1;Parent=Physo129496;constitutive=1;rank=1 scaffold_8 . CDS 47047 47141 . + 0 ID=Physo129496;Parent=Physo129496;rank=2 scaffold_8 . exon 47047 47141 . + . ID=Physo129496.2;Parent=Physo129496;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 47311 47758 . + 0 ID=Physo129496;Parent=Physo129496;rank=3 scaffold_8 . exon 47311 47758 . + . ID=Physo129496.3;Parent=Physo129496;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 47827 47913 . + 0 ID=Physo129496;Parent=Physo129496;rank=4 scaffold_8 . exon 47827 47913 . + . ID=Physo129496.4;Parent=Physo129496;constitutive=1;rank=4 scaffold_8 . repeat_region 52032 52051 . ? . description=trf scaffold_8 . repeat_region 52737 52785 . ? . description=trf scaffold_8 . repeat_region 56747 56767 . ? . description=trf scaffold_8 ensembl protein_coding_gene 54114 54844 . + . ID=Physo129497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80008;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 54114 54844 . + . ID=Physo129497;Parent=Physo129497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 54114 54742 . + 0 ID=Physo129497;Parent=Physo129497;rank=1 scaffold_8 . exon 54114 54742 . + . ID=Physo129497.1;Parent=Physo129497;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 54829 54844 . + 0 ID=Physo129497;Parent=Physo129497;rank=2 scaffold_8 . exon 54829 54844 . + . ID=Physo129497.2;Parent=Physo129497;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 ensembl protein_coding_gene 57920 58234 . - . ID=Physo129498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80009;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 57920 58234 . - . ID=Physo129498;Parent=Physo129498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 57920 58234 . - 0 ID=Physo129498;Parent=Physo129498;rank=1 scaffold_8 . exon 57920 58234 . - . ID=Physo129498.1;Parent=Physo129498;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 58538 59410 . - . ID=Physo129499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80010;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 58538 59410 . - . ID=Physo129499;Parent=Physo129499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 58538 59410 . - 0 ID=Physo129499;Parent=Physo129499;rank=1 scaffold_8 . exon 58538 59410 . - . ID=Physo129499.1;Parent=Physo129499;constitutive=1;rank=1 scaffold_8 . biological_region 64242 64246 0.999 + . logic_name=eponine scaffold_8 . biological_region 64312 64315 0.999 - . logic_name=eponine scaffold_8 . repeat_region 67187 67200 . ? . description=dust scaffold_8 . biological_region 67232 67237 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 63551 64342 . - . ID=Physo129500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80011;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 63551 64342 . - . ID=Physo129500;Parent=Physo129500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 63551 63615 . - 0 ID=Physo129500;Parent=Physo129500;rank=2 scaffold_8 . exon 63551 63615 . - . ID=Physo129500.2;Parent=Physo129500;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 63718 64342 . - 0 ID=Physo129500;Parent=Physo129500;rank=1 scaffold_8 . exon 63718 64342 . - . ID=Physo129500.1;Parent=Physo129500;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . biological_region 83351 83357 0.999 - . logic_name=eponine scaffold_8 . repeat_region 88241 88306 . ? . description=trf scaffold_8 ensembl protein_coding_gene 84199 85133 . - . ID=Physo108391;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80001;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 84199 85133 . - . ID=Physo108391;Parent=Physo108391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 84199 84607 . - 0 ID=Physo108391;Parent=Physo108391;rank=3 scaffold_8 . exon 84199 84607 . - . ID=Physo108391.3;Parent=Physo108391;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 84643 84784 . - 0 ID=Physo108391;Parent=Physo108391;rank=2 scaffold_8 . exon 84643 84784 . - . ID=Physo108391.2;Parent=Physo108391;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 84827 85133 . - 0 ID=Physo108391;Parent=Physo108391;rank=1 scaffold_8 . exon 84827 85133 . - . ID=Physo108391.1;Parent=Physo108391;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 85155 85472 . - . ID=Physo108392;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80002;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 85155 85472 . - . ID=Physo108392;Parent=Physo108392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 85155 85472 . - 0 ID=Physo108392;Parent=Physo108392;rank=1 scaffold_8 . exon 85155 85472 . - . ID=Physo108392.1;Parent=Physo108392;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 79723 80707 . - . ID=Physo129501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80012;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 79723 80707 . - . ID=Physo129501;Parent=Physo129501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 79723 80333 . - 0 ID=Physo129501;Parent=Physo129501;rank=3 scaffold_8 . exon 79723 80333 . - . ID=Physo129501.3;Parent=Physo129501;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 80447 80648 . - 0 ID=Physo129501;Parent=Physo129501;rank=2 scaffold_8 . exon 80447 80648 . - . ID=Physo129501.2;Parent=Physo129501;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 80672 80707 . - 0 ID=Physo129501;Parent=Physo129501;rank=1 scaffold_8 . exon 80672 80707 . - . ID=Physo129501.1;Parent=Physo129501;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 81983 82324 . + . ID=Physo129502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80013;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 81983 82324 . + . ID=Physo129502;Parent=Physo129502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 81983 82324 . + 0 ID=Physo129502;Parent=Physo129502;rank=1 scaffold_8 . exon 81983 82324 . + . ID=Physo129502.1;Parent=Physo129502;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 88131 89844 . - . ID=Physo129505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80016;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 88131 89844 . - . ID=Physo129505;Parent=Physo129505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 88131 88409 . - 0 ID=Physo129505;Parent=Physo129505;rank=5 scaffold_8 . exon 88131 88409 . - . ID=Physo129505.5;Parent=Physo129505;constitutive=1;rank=5 scaffold_8 . CDS 88717 89005 . - 0 ID=Physo129505;Parent=Physo129505;rank=4 scaffold_8 . exon 88717 89005 . - . ID=Physo129505.4;Parent=Physo129505;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 89234 89251 . - 0 ID=Physo129505;Parent=Physo129505;rank=3 scaffold_8 . exon 89234 89251 . - . ID=Physo129505.3;Parent=Physo129505;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_8 . CDS 89373 89750 . - 0 ID=Physo129505;Parent=Physo129505;rank=2 scaffold_8 . CDS 89789 89844 . - 0 ID=Physo129505;Parent=Physo129505;rank=1 scaffold_8 . exon 89373 89750 . - . ID=Physo129505.2;Parent=Physo129505;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . exon 89789 89844 . - . ID=Physo129505.1;Parent=Physo129505;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 90128 91900 . + . ID=Physo129506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80017;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 90128 91900 . + . ID=Physo129506;Parent=Physo129506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 90128 91900 . + 0 ID=Physo129506;Parent=Physo129506;rank=1 scaffold_8 . exon 90128 91900 . + . ID=Physo129506.1;Parent=Physo129506;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 93974 94680 . + . ID=Physo129507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80018;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 93974 94680 . + . ID=Physo129507;Parent=Physo129507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 93974 94208 . + 0 ID=Physo129507;Parent=Physo129507;rank=1 scaffold_8 . exon 93974 94208 . + . ID=Physo129507.1;Parent=Physo129507;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 94305 94609 . + 0 ID=Physo129507;Parent=Physo129507;rank=2 scaffold_8 . exon 94305 94609 . + . ID=Physo129507.2;Parent=Physo129507;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 94639 94680 . + 0 ID=Physo129507;Parent=Physo129507;rank=3 scaffold_8 . exon 94639 94680 . + . ID=Physo129507.3;Parent=Physo129507;constitutive=1;rank=3 scaffold_8 . biological_region 102991 102995 0.999 - . logic_name=eponine scaffold_8 . biological_region 103268 103271 0.999 - . logic_name=eponine scaffold_8 . biological_region 103734 103738 0.999 + . logic_name=eponine scaffold_8 . repeat_region 104844 104894 . ? . description=trf scaffold_8 . biological_region 105680 105683 0.999 - . logic_name=eponine scaffold_8 . biological_region 105939 105940 0.999 + . logic_name=eponine scaffold_8 . biological_region 108811 108813 0.999 - . logic_name=eponine scaffold_8 . biological_region 108821 108823 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 102736 103985 . - . ID=Physo129508;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80019;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 102736 103985 . - . ID=Physo129508;Parent=Physo129508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 102736 103635 . - 0 ID=Physo129508;Parent=Physo129508;rank=2 scaffold_8 . exon 102736 103635 . - . ID=Physo129508.2;Parent=Physo129508;constitutive=1;rank=2 scaffold_8 . CDS 103671 103985 . - 0 ID=Physo129508;Parent=Physo129508;rank=1 scaffold_8 . exon 103671 103985 . - . ID=Physo129508.1;Parent=Physo129508;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 104376 104900 . + . ID=Physo129509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80020;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 104376 104900 . + . ID=Physo129509;Parent=Physo129509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 104376 104900 . + 0 ID=Physo129509;Parent=Physo129509;rank=1 scaffold_8 . exon 104376 104900 . + . ID=Physo129509.1;Parent=Physo129509;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 104997 106027 . - . ID=Physo129510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80021;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 104997 106027 . - . ID=Physo129510;Parent=Physo129510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 104997 105719 . - 0 ID=Physo129510;Parent=Physo129510;rank=2 scaffold_8 . exon 104997 105719 . - . ID=Physo129510.2;Parent=Physo129510;constitutive=1;rank=2 scaffold_8 . CDS 105779 106027 . - 0 ID=Physo129510;Parent=Physo129510;rank=1 scaffold_8 . exon 105779 106027 . - . ID=Physo129510.1;Parent=Physo129510;constitutive=1;rank=1 scaffold_8 . repeat_region 111190 111204 . ? . description=dust scaffold_8 . repeat_region 111955 111963 . ? . description=dust scaffold_8 . repeat_region 117711 117719 . ? . description=dust scaffold_8 . repeat_region 119097 119104 . ? . description=dust scaffold_8 ensembl protein_coding_gene 109220 110911 . + . ID=Physo129511;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80022;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 109220 110911 . + . ID=Physo129511;Parent=Physo129511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 109220 110911 . + 0 ID=Physo129511;Parent=Physo129511;rank=1 scaffold_8 . exon 109220 110911 . + . ID=Physo129511.1;Parent=Physo129511;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 112639 113694 . + . ID=Physo129512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80023;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 112639 113694 . + . ID=Physo129512;Parent=Physo129512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 112639 112952 . + 0 ID=Physo129512;Parent=Physo129512;rank=1 scaffold_8 . exon 112639 112952 . + . ID=Physo129512.1;Parent=Physo129512;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 113110 113233 . + 0 ID=Physo129512;Parent=Physo129512;rank=2 scaffold_8 . exon 113110 113233 . + . ID=Physo129512.2;Parent=Physo129512;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 113302 113694 . + 0 ID=Physo129512;Parent=Physo129512;rank=3 scaffold_8 . exon 113302 113694 . + . ID=Physo129512.3;Parent=Physo129512;constitutive=1;rank=3 scaffold_8 . biological_region 126743 126745 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 120399 120776 . - . ID=Physo129513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80024;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 120399 120776 . - . ID=Physo129513;Parent=Physo129513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 120399 120776 . - 0 ID=Physo129513;Parent=Physo129513;rank=1 scaffold_8 . exon 120399 120776 . - . ID=Physo129513.1;Parent=Physo129513;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 125477 126793 . - . ID=Physo129514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80025;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 125477 126793 . - . ID=Physo129514;Parent=Physo129514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 125477 125709 . - 0 ID=Physo129514;Parent=Physo129514;rank=2 scaffold_8 . exon 125477 125709 . - . ID=Physo129514.4;Parent=Physo129514;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 125957 126119 . - 0 ID=Physo129514;Parent=Physo129514;rank=1 scaffold_8 . exon 125957 126168 . - . ID=Physo129514.3;Parent=Physo129514;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=3 scaffold_8 . exon 126360 126412 . - . ID=Physo129514.2;Parent=Physo129514;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_8 . exon 126432 126793 . - . ID=Physo129514.1;Parent=Physo129514;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_8 . repeat_region 129477 129484 . ? . description=dust scaffold_8 . repeat_region 129560 129587 . ? . description=trf scaffold_8 . repeat_region 129918 129953 . ? . description=dust scaffold_8 . repeat_region 131354 131361 . ? . description=dust scaffold_8 . repeat_region 133746 133786 . ? . description=trf scaffold_8 ensembl protein_coding_gene 134014 137113 . + . ID=Physo129515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80026;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 134014 137113 . + . ID=Physo129515;Parent=Physo129515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 134014 134539 . + 0 ID=Physo129515;Parent=Physo129515;rank=1 scaffold_8 . exon 134014 134539 . + . ID=Physo129515.1;Parent=Physo129515;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 134587 135308 . + 0 ID=Physo129515;Parent=Physo129515;rank=2 scaffold_8 . exon 134587 135308 . + . ID=Physo129515.2;Parent=Physo129515;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 135491 135821 . + 0 ID=Physo129515;Parent=Physo129515;rank=3 scaffold_8 . exon 135491 135821 . + . ID=Physo129515.3;Parent=Physo129515;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 135914 136019 . + 0 ID=Physo129515;Parent=Physo129515;rank=4 scaffold_8 . exon 135914 136019 . + . ID=Physo129515.4;Parent=Physo129515;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 136390 137113 . + 0 ID=Physo129515;Parent=Physo129515;rank=5 scaffold_8 . exon 136390 137113 . + . ID=Physo129515.5;Parent=Physo129515;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 ensembl protein_coding_gene 137513 139570 . - . ID=Physo129516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80027;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 137513 139570 . - . ID=Physo129516;Parent=Physo129516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 137513 139570 . - 0 ID=Physo129516;Parent=Physo129516;rank=1 scaffold_8 . exon 137513 139570 . - . ID=Physo129516.1;Parent=Physo129516;constitutive=1;rank=1 scaffold_8 . biological_region 143381 143384 0.999 + . logic_name=eponine scaffold_8 . biological_region 143429 143431 0.999 - . logic_name=eponine scaffold_8 . biological_region 143433 143434 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 140246 142035 . - . ID=Physo129517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80028;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 140246 142035 . - . ID=Physo129517;Parent=Physo129517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 140246 140631 . - 0 ID=Physo129517;Parent=Physo129517;rank=4 scaffold_8 . exon 140246 140631 . - . ID=Physo129517.4;Parent=Physo129517;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 140873 141412 . - 0 ID=Physo129517;Parent=Physo129517;rank=3 scaffold_8 . exon 140873 141412 . - . ID=Physo129517.3;Parent=Physo129517;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 141466 141606 . - 0 ID=Physo129517;Parent=Physo129517;rank=2 scaffold_8 . exon 141466 141606 . - . ID=Physo129517.2;Parent=Physo129517;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 141990 142035 . - 0 ID=Physo129517;Parent=Physo129517;rank=1 scaffold_8 . exon 141990 142035 . - . ID=Physo129517.1;Parent=Physo129517;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 144618 145460 . - . ID=Physo129518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80029;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 144618 145460 . - . ID=Physo129518;Parent=Physo129518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 144618 145460 . - 0 ID=Physo129518;Parent=Physo129518;rank=1 scaffold_8 . exon 144618 145460 . - . ID=Physo129518.1;Parent=Physo129518;constitutive=1;rank=1 scaffold_8 . repeat_region 153249 153258 . ? . description=dust scaffold_8 ensembl protein_coding_gene 157797 158887 . - . ID=Physo129520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80031;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 157797 158887 . - . ID=Physo129520;Parent=Physo129520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 157797 158218 . - 0 ID=Physo129520;Parent=Physo129520;rank=2 scaffold_8 . exon 157797 158218 . - . ID=Physo129520.2;Parent=Physo129520;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 158251 158401 . - 0 ID=Physo129520;Parent=Physo129520;rank=1 scaffold_8 . exon 158251 158887 . - . ID=Physo129520.1;Parent=Physo129520;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_8 . biological_region 168054 168056 0.999 - . logic_name=eponine scaffold_8 . biological_region 168401 168406 0.999 + . logic_name=eponine scaffold_8 . biological_region 168435 168438 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 167002 168501 . - . ID=Physo129521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80032;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 167002 168501 . - . ID=Physo129521;Parent=Physo129521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 167002 168501 . - 0 ID=Physo129521;Parent=Physo129521;rank=1 scaffold_8 . exon 167002 168501 . - . ID=Physo129521.1;Parent=Physo129521;constitutive=1;rank=1 scaffold_8 . repeat_region 171164 171187 . ? . description=trf scaffold_8 . repeat_region 174116 174148 . ? . description=trf scaffold_8 . repeat_region 177001 177046 . ? . description=trf scaffold_8 ensembl protein_coding_gene 169653 170867 . + . ID=Physo129522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80033;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 169653 170867 . + . ID=Physo129522;Parent=Physo129522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 169653 170867 . + 0 ID=Physo129522;Parent=Physo129522;rank=1 scaffold_8 . exon 169653 170867 . + . ID=Physo129522.1;Parent=Physo129522;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 174341 183958 . - . ID=Physo129523;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80034;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 174341 183958 . - . ID=Physo129523;Parent=Physo129523;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 174341 174511 . - 0 ID=Physo129523;Parent=Physo129523;rank=13 scaffold_8 . exon 174341 174511 . - . ID=Physo129523.13;Parent=Physo129523;constitutive=1;rank=13 scaffold_8 . CDS 174572 174824 . - 0 ID=Physo129523;Parent=Physo129523;rank=12 scaffold_8 . exon 174572 174824 . - . ID=Physo129523.12;Parent=Physo129523;constitutive=1;ensembl_phase=2;rank=12 scaffold_8 . CDS 174937 175274 . - 0 ID=Physo129523;Parent=Physo129523;rank=11 scaffold_8 . exon 174937 175274 . - . ID=Physo129523.11;Parent=Physo129523;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_8 . CDS 175430 175712 . - 0 ID=Physo129523;Parent=Physo129523;rank=10 scaffold_8 . exon 175430 175712 . - . ID=Physo129523.10;Parent=Physo129523;constitutive=1;ensembl_phase=2;rank=10 scaffold_8 . CDS 175842 176329 . - 0 ID=Physo129523;Parent=Physo129523;rank=9 scaffold_8 . exon 175842 176329 . - . ID=Physo129523.9;Parent=Physo129523;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_8 . CDS 176371 176461 . - 0 ID=Physo129523;Parent=Physo129523;rank=8 scaffold_8 . exon 176371 176461 . - . ID=Physo129523.8;Parent=Physo129523;constitutive=1;ensembl_phase=2;rank=8 scaffold_8 . CDS 176668 177262 . - 0 ID=Physo129523;Parent=Physo129523;rank=7 scaffold_8 . exon 176668 177262 . - . ID=Physo129523.7;Parent=Physo129523;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_8 . CDS 177914 178177 . - 0 ID=Physo129523;Parent=Physo129523;rank=6 scaffold_8 . exon 177914 178177 . - . ID=Physo129523.6;Parent=Physo129523;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_8 . CDS 178378 179316 . - 0 ID=Physo129523;Parent=Physo129523;rank=5 scaffold_8 . exon 178378 179316 . - . ID=Physo129523.5;Parent=Physo129523;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_8 . CDS 180366 180855 . - 0 ID=Physo129523;Parent=Physo129523;rank=4 scaffold_8 . CDS 180910 181125 . - 0 ID=Physo129523;Parent=Physo129523;rank=3 scaffold_8 . CDS 181179 181552 . - 0 ID=Physo129523;Parent=Physo129523;rank=2 scaffold_8 . CDS 181600 183505 . - 0 ID=Physo129523;Parent=Physo129523;rank=1 scaffold_8 . biological_region 180456 180458 0.999 + . logic_name=eponine scaffold_8 . biological_region 180842 180845 0.999 - . logic_name=eponine scaffold_8 . biological_region 180986 180989 0.999 - . logic_name=eponine scaffold_8 . biological_region 181504 181506 0.999 - . logic_name=eponine scaffold_8 . biological_region 181558 181564 0.999 - . logic_name=eponine scaffold_8 . biological_region 181583 181586 0.999 - . logic_name=eponine scaffold_8 . biological_region 181806 181807 0.999 + . logic_name=eponine scaffold_8 . biological_region 181862 181864 0.999 + . logic_name=eponine scaffold_8 . biological_region 181946 181946 0.999 - . logic_name=eponine scaffold_8 . biological_region 182016 182020 0.999 - . logic_name=eponine scaffold_8 . repeat_region 182796 182905 . + . description=(TCG)n scaffold_8 . biological_region 182803 182804 0.999 + . logic_name=eponine scaffold_8 . repeat_region 182811 182905 . ? . description=dust scaffold_8 . repeat_region 182943 182951 . ? . description=dust scaffold_8 . biological_region 183277 183281 0.999 - . logic_name=eponine scaffold_8 . biological_region 183616 183616 0.999 - . logic_name=eponine scaffold_8 . biological_region 184048 184052 0.999 + . logic_name=eponine scaffold_8 . exon 180366 180855 . - . ID=Physo129523.4;Parent=Physo129523;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_8 . exon 180910 181125 . - . ID=Physo129523.3;Parent=Physo129523;constitutive=1;rank=3 scaffold_8 . exon 181179 181552 . - . ID=Physo129523.2;Parent=Physo129523;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . exon 181600 183958 . - . ID=Physo129523.1;Parent=Physo129523;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 184769 188141 . + . ID=Physo129524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80035;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 184769 188141 . + . ID=Physo129524;Parent=Physo129524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 184769 185314 . + 0 ID=Physo129524;Parent=Physo129524;rank=1 scaffold_8 . exon 184769 185314 . + . ID=Physo129524.1;Parent=Physo129524;constitutive=1;rank=1 scaffold_8 . CDS 185376 185486 . + 0 ID=Physo129524;Parent=Physo129524;rank=2 scaffold_8 . exon 185376 185486 . + . ID=Physo129524.2;Parent=Physo129524;constitutive=1;rank=2 scaffold_8 . CDS 185531 187087 . + 0 ID=Physo129524;Parent=Physo129524;rank=3 scaffold_8 . exon 185531 187087 . + . ID=Physo129524.3;Parent=Physo129524;constitutive=1;rank=3 scaffold_8 . CDS 187301 187451 . + 0 ID=Physo129524;Parent=Physo129524;rank=4 scaffold_8 . exon 187301 187451 . + . ID=Physo129524.4;Parent=Physo129524;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_8 . CDS 187521 187675 . + 0 ID=Physo129524;Parent=Physo129524;rank=5 scaffold_8 . exon 187521 187675 . + . ID=Physo129524.5;Parent=Physo129524;constitutive=1;ensembl_phase=1;rank=5 scaffold_8 . CDS 187929 188141 . + 0 ID=Physo129524;Parent=Physo129524;rank=6 scaffold_8 . exon 187929 188141 . + . ID=Physo129524.6;Parent=Physo129524;constitutive=1;rank=6 scaffold_8 ensembl protein_coding_gene 188237 190912 . - . ID=Physo155796;biotype=protein_coding;external_name=C_scaffold_8000002;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 188237 190912 . - . ID=Physo155796;Parent=Physo155796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 188237 188409 . - 0 ID=Physo155796;Parent=Physo155796;rank=8 scaffold_8 . exon 188237 188409 . - . ID=Physo155796.8;Parent=Physo155796;constitutive=1;ensembl_phase=1;rank=8 scaffold_8 . CDS 188485 188672 . - 0 ID=Physo155796;Parent=Physo155796;rank=7 scaffold_8 . exon 188485 188672 . - . ID=Physo155796.7;Parent=Physo155796;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_8 . CDS 188740 189001 . - 0 ID=Physo155796;Parent=Physo155796;rank=6 scaffold_8 . CDS 189038 189904 . - 0 ID=Physo155796;Parent=Physo155796;rank=5 scaffold_8 . CDS 189984 190128 . - 0 ID=Physo155796;Parent=Physo155796;rank=4 scaffold_8 . CDS 190210 190517 . - 0 ID=Physo155796;Parent=Physo155796;rank=3 scaffold_8 . CDS 190622 190686 . - 0 ID=Physo155796;Parent=Physo155796;rank=2 scaffold_8 . CDS 190821 190912 . - 0 ID=Physo155796;Parent=Physo155796;rank=1 scaffold_8 . repeat_region 190564 190593 . ? . description=trf scaffold_8 ensembl protein_coding_gene 191032 191832 . + . ID=Physo129526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80037;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 191032 191832 . + . ID=Physo129526;Parent=Physo129526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 191032 191832 . + 0 ID=Physo129526;Parent=Physo129526;rank=1 scaffold_8 . exon 191032 191832 . + . ID=Physo129526.1;Parent=Physo129526;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 192648 193898 . - . ID=Physo129527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80038;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 192648 193898 . - . ID=Physo129527;Parent=Physo129527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 192648 193259 . - 0 ID=Physo129527;Parent=Physo129527;rank=4 scaffold_8 . exon 192648 193259 . - . ID=Physo129527.4;Parent=Physo129527;constitutive=1;rank=4 scaffold_8 . CDS 193328 193471 . - 0 ID=Physo129527;Parent=Physo129527;rank=3 scaffold_8 . exon 193328 193471 . - . ID=Physo129527.3;Parent=Physo129527;constitutive=1;rank=3 scaffold_8 . CDS 193538 193573 . - 0 ID=Physo129527;Parent=Physo129527;rank=2 scaffold_8 . exon 193538 193573 . - . ID=Physo129527.2;Parent=Physo129527;constitutive=1;rank=2 scaffold_8 . CDS 193647 193898 . - 0 ID=Physo129527;Parent=Physo129527;rank=1 scaffold_8 . exon 193647 193898 . - . ID=Physo129527.1;Parent=Physo129527;constitutive=1;rank=1 scaffold_8 . exon 188740 189001 . - . ID=Physo155796.6;Parent=Physo155796;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_8 . exon 189038 189904 . - . ID=Physo155796.5;Parent=Physo155796;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_8 . exon 189984 190128 . - . ID=Physo155796.4;Parent=Physo155796;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_8 . exon 190210 190517 . - . ID=Physo155796.3;Parent=Physo155796;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . exon 190622 190686 . - . ID=Physo155796.2;Parent=Physo155796;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . exon 190821 190912 . - . ID=Physo155796.1;Parent=Physo155796;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . biological_region 200447 200449 0.999 + . logic_name=eponine scaffold_8 . biological_region 203241 203242 0.999 + . logic_name=eponine scaffold_8 . repeat_region 204595 204603 . ? . description=dust scaffold_8 ensembl protein_coding_gene 198857 200243 . + . ID=Physo129528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80039;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 198857 200243 . + . ID=Physo129528;Parent=Physo129528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 198857 199192 . + 0 ID=Physo129528;Parent=Physo129528;rank=1 scaffold_8 . exon 198857 199192 . + . ID=Physo129528.1;Parent=Physo129528;constitutive=1;rank=1 scaffold_8 . CDS 199281 199666 . + 0 ID=Physo129528;Parent=Physo129528;rank=2 scaffold_8 . exon 199281 199666 . + . ID=Physo129528.2;Parent=Physo129528;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 199724 200243 . + 0 ID=Physo129528;Parent=Physo129528;rank=3 scaffold_8 . exon 199724 200243 . + . ID=Physo129528.3;Parent=Physo129528;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 ensembl protein_coding_gene 202145 203555 . - . ID=Physo129529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80040;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 202145 203555 . - . ID=Physo129529;Parent=Physo129529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 202145 202349 . - 0 ID=Physo129529;Parent=Physo129529;rank=3 scaffold_8 . exon 202145 202349 . - . ID=Physo129529.3;Parent=Physo129529;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 202522 202529 . - 0 ID=Physo129529;Parent=Physo129529;rank=2 scaffold_8 . exon 202522 202529 . - . ID=Physo129529.2;Parent=Physo129529;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 202599 203555 . - 0 ID=Physo129529;Parent=Physo129529;rank=1 scaffold_8 . exon 202599 203555 . - . ID=Physo129529.1;Parent=Physo129529;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 207858 211640 . - . ID=Physo129530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80041;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 207858 211640 . - . ID=Physo129530;Parent=Physo129530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 207858 211640 . - 0 ID=Physo129530;Parent=Physo129530;rank=1 scaffold_8 . exon 207858 211640 . - . ID=Physo129530.1;Parent=Physo129530;constitutive=1;rank=1 scaffold_8 . repeat_region 218100 218156 . + . description=(CGA)n scaffold_8 ensembl protein_coding_gene 212705 213235 . + . ID=Physo129531;biotype=protein_coding;description=PsAvh263 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Q7];external_name=estExt_fgenesh1_pg.C_80042;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 212705 213235 . + . ID=Physo129531;Parent=Physo129531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 212705 213235 . + 0 ID=Physo129531;Parent=Physo129531;rank=1 scaffold_8 . exon 212705 213235 . + . ID=Physo129531.1;Parent=Physo129531;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 214412 214828 . - . ID=Physo129532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80043;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 214412 214828 . - . ID=Physo129532;Parent=Physo129532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 214412 214828 . - 0 ID=Physo129532;Parent=Physo129532;rank=1 scaffold_8 . exon 214412 214828 . - . ID=Physo129532.1;Parent=Physo129532;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 215227 216210 . + . ID=Physo129533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80044;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 215227 216210 . + . ID=Physo129533;Parent=Physo129533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 215227 215306 . + 0 ID=Physo129533;Parent=Physo129533;rank=1 scaffold_8 . exon 215227 215306 . + . ID=Physo129533.1;Parent=Physo129533;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 215383 216118 . + 0 ID=Physo129533;Parent=Physo129533;rank=2 scaffold_8 . exon 215383 216118 . + . ID=Physo129533.2;Parent=Physo129533;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 216160 216210 . + 0 ID=Physo129533;Parent=Physo129533;rank=3 scaffold_8 . exon 216160 216210 . + . ID=Physo129533.3;Parent=Physo129533;constitutive=1;rank=3 scaffold_8 . biological_region 218975 218981 0.999 + . logic_name=eponine scaffold_8 . biological_region 219912 219914 0.999 - . logic_name=eponine scaffold_8 . repeat_region 221074 221081 . ? . description=dust scaffold_8 . repeat_region 222004 222012 . ? . description=dust scaffold_8 . repeat_region 222273 222347 . ? . description=dust scaffold_8 . repeat_region 222305 222331 . ? . description=trf scaffold_8 . repeat_region 222306 222331 . ? . description=trf scaffold_8 . repeat_region 222680 222709 . ? . description=trf scaffold_8 . biological_region 223449 223449 0.999 + . logic_name=eponine scaffold_8 . biological_region 223486 223489 0.999 - . logic_name=eponine scaffold_8 . repeat_region 225706 225725 . ? . description=trf scaffold_8 . repeat_region 225805 225843 . ? . description=trf scaffold_8 ensembl protein_coding_gene 222062 223810 . + . ID=Physo129534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80045;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 222062 223810 . + . ID=Physo129534;Parent=Physo129534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 222062 223579 . + 0 ID=Physo129534;Parent=Physo129534;rank=1 scaffold_8 . exon 222062 223579 . + . ID=Physo129534.1;Parent=Physo129534;constitutive=1;rank=1 scaffold_8 . CDS 223661 223810 . + 0 ID=Physo129534;Parent=Physo129534;rank=2 scaffold_8 . exon 223661 223810 . + . ID=Physo129534.2;Parent=Physo129534;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 225622 230264 . + . ID=Physo129535;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80046;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 225622 230264 . + . ID=Physo129535;Parent=Physo129535;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 225622 226416 . + 0 ID=Physo129535;Parent=Physo129535;rank=1 scaffold_8 . exon 225622 226416 . + . ID=Physo129535.1;Parent=Physo129535;constitutive=1;rank=1 scaffold_8 . CDS 226926 226976 . + 0 ID=Physo129535;Parent=Physo129535;rank=2 scaffold_8 . exon 226926 226976 . + . ID=Physo129535.2;Parent=Physo129535;constitutive=1;rank=2 scaffold_8 . CDS 227103 227369 . + 0 ID=Physo129535;Parent=Physo129535;rank=3 scaffold_8 . exon 227103 227369 . + . ID=Physo129535.3;Parent=Physo129535;constitutive=1;rank=3 scaffold_8 . CDS 227490 227840 . + 0 ID=Physo129535;Parent=Physo129535;rank=4 scaffold_8 . exon 227490 227840 . + . ID=Physo129535.4;Parent=Physo129535;constitutive=1;rank=4 scaffold_8 . CDS 228038 228092 . + 0 ID=Physo129535;Parent=Physo129535;rank=5 scaffold_8 . exon 228038 228092 . + . ID=Physo129535.5;Parent=Physo129535;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_8 . CDS 228133 228537 . + 0 ID=Physo129535;Parent=Physo129535;rank=6 scaffold_8 . exon 228133 228537 . + . ID=Physo129535.6;Parent=Physo129535;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_8 . CDS 228683 229730 . + 0 ID=Physo129535;Parent=Physo129535;rank=7 scaffold_8 . CDS 229760 230264 . + 0 ID=Physo129535;Parent=Physo129535;rank=8 scaffold_8 . exon 228683 229730 . + . ID=Physo129535.7;Parent=Physo129535;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_8 . exon 229760 230264 . + . ID=Physo129535.8;Parent=Physo129535;constitutive=1;ensembl_phase=2;rank=8 scaffold_8 ensembl protein_coding_gene 231009 231503 . + . ID=Physo129536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80047;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 231009 231503 . + . ID=Physo129536;Parent=Physo129536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 231009 231503 . + 0 ID=Physo129536;Parent=Physo129536;rank=1 scaffold_8 . exon 231009 231503 . + . ID=Physo129536.1;Parent=Physo129536;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 232921 235404 . - . ID=Physo129537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80048;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 232921 235404 . - . ID=Physo129537;Parent=Physo129537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 232921 233099 . - 0 ID=Physo129537;Parent=Physo129537;rank=6 scaffold_8 . exon 232921 233099 . - . ID=Physo129537.6;Parent=Physo129537;constitutive=1;ensembl_phase=1;rank=6 scaffold_8 . CDS 233321 233800 . - 0 ID=Physo129537;Parent=Physo129537;rank=5 scaffold_8 . exon 233321 233800 . - . ID=Physo129537.5;Parent=Physo129537;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_8 . CDS 234049 234503 . - 0 ID=Physo129537;Parent=Physo129537;rank=4 scaffold_8 . exon 234049 234503 . - . ID=Physo129537.4;Parent=Physo129537;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 234548 234684 . - 0 ID=Physo129537;Parent=Physo129537;rank=3 scaffold_8 . exon 234548 234684 . - . ID=Physo129537.3;Parent=Physo129537;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_8 . CDS 234735 234824 . - 0 ID=Physo129537;Parent=Physo129537;rank=2 scaffold_8 . exon 234735 234824 . - . ID=Physo129537.2;Parent=Physo129537;constitutive=1;rank=2 scaffold_8 . CDS 235399 235404 . - 0 ID=Physo129537;Parent=Physo129537;rank=1 scaffold_8 . exon 235399 235404 . - . ID=Physo129537.1;Parent=Physo129537;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 235921 238071 . + . ID=Physo129538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80049;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 235921 238071 . + . ID=Physo129538;Parent=Physo129538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 235921 238071 . + 0 ID=Physo129538;Parent=Physo129538;rank=1 scaffold_8 . exon 235921 238071 . + . ID=Physo129538.1;Parent=Physo129538;constitutive=1;rank=1 scaffold_8 . repeat_region 238587 238594 . ? . description=dust scaffold_8 . repeat_region 242870 243672 . ? . description=dust scaffold_8 . repeat_region 247543 247578 . ? . description=trf scaffold_8 . biological_region 248020 248021 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 247923 248231 . - . ID=Physo129539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80050;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 247923 248231 . - . ID=Physo129539;Parent=Physo129539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 247923 248231 . - 0 ID=Physo129539;Parent=Physo129539;rank=1 scaffold_8 . exon 247923 248231 . - . ID=Physo129539.1;Parent=Physo129539;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 249308 249676 . - . ID=Physo112221;biotype=protein_coding;external_name=estExt_Genewise1.C_80180;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 249308 249676 . - . ID=Physo112221;Parent=Physo112221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 249308 249664 . - 0 ID=Physo112221;Parent=Physo112221;rank=1 scaffold_8 . exon 249308 249676 . - . ID=Physo112221.1;Parent=Physo112221;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 251465 252964 . - . ID=Physo129540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80051;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 251465 252964 . - . ID=Physo129540;Parent=Physo129540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 251465 252105 . - 0 ID=Physo129540;Parent=Physo129540;rank=6 scaffold_8 . exon 251465 252105 . - . ID=Physo129540.6;Parent=Physo129540;constitutive=1;ensembl_phase=1;rank=6 scaffold_8 . CDS 252174 252259 . - 0 ID=Physo129540;Parent=Physo129540;rank=5 scaffold_8 . exon 252174 252259 . - . ID=Physo129540.5;Parent=Physo129540;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 252291 252357 . - 0 ID=Physo129540;Parent=Physo129540;rank=4 scaffold_8 . exon 252291 252357 . - . ID=Physo129540.4;Parent=Physo129540;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 252390 252423 . - 0 ID=Physo129540;Parent=Physo129540;rank=3 scaffold_8 . exon 252390 252423 . - . ID=Physo129540.3;Parent=Physo129540;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 252453 252571 . - 0 ID=Physo129540;Parent=Physo129540;rank=2 scaffold_8 . exon 252453 252571 . - . ID=Physo129540.2;Parent=Physo129540;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 252673 252964 . - 0 ID=Physo129540;Parent=Physo129540;rank=1 scaffold_8 . exon 252673 252964 . - . ID=Physo129540.1;Parent=Physo129540;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . repeat_region 259981 260105 . ? . description=trf scaffold_8 . repeat_region 259981 260125 . ? . description=dust scaffold_8 . repeat_region 262310 262343 . ? . description=trf scaffold_8 . repeat_region 262740 262748 . ? . description=dust scaffold_8 . repeat_region 263401 263444 . ? . description=trf scaffold_8 . repeat_region 263401 263453 . ? . description=trf scaffold_8 . biological_region 264038 264040 0.999 + . logic_name=eponine scaffold_8 . repeat_region 265029 265115 . + . description=(CGA)n scaffold_8 . biological_region 265218 265223 0.999 - . logic_name=eponine scaffold_8 . repeat_region 267051 267209 . - . description=Gypsy-2-I_PI-int scaffold_8 . repeat_region 267670 268958 . - . description=Gypsy-2-I_PI-int scaffold_8 ensembl protein_coding_gene 259874 262114 . + . ID=Physo129541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80052;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 259874 262114 . + . ID=Physo129541;Parent=Physo129541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 259874 260200 . + 0 ID=Physo129541;Parent=Physo129541;rank=1 scaffold_8 . exon 259874 260200 . + . ID=Physo129541.1;Parent=Physo129541;constitutive=1;rank=1 scaffold_8 . CDS 260265 260340 . + 0 ID=Physo129541;Parent=Physo129541;rank=2 scaffold_8 . exon 260265 260340 . + . ID=Physo129541.2;Parent=Physo129541;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 260624 260766 . + 0 ID=Physo129541;Parent=Physo129541;rank=3 scaffold_8 . exon 260624 260766 . + . ID=Physo129541.3;Parent=Physo129541;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 261037 261869 . + 0 ID=Physo129541;Parent=Physo129541;rank=4 scaffold_8 . exon 261037 261869 . + . ID=Physo129541.4;Parent=Physo129541;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . CDS 261976 262114 . + 0 ID=Physo129541;Parent=Physo129541;rank=5 scaffold_8 . exon 261976 262114 . + . ID=Physo129541.5;Parent=Physo129541;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 ensembl protein_coding_gene 264489 266035 . + . ID=Physo129542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80053;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 264489 266035 . + . ID=Physo129542;Parent=Physo129542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 264489 265508 . + 0 ID=Physo129542;Parent=Physo129542;rank=1 scaffold_8 . exon 264489 265508 . + . ID=Physo129542.1;Parent=Physo129542;constitutive=1;rank=1 scaffold_8 . CDS 265634 266035 . + 0 ID=Physo129542;Parent=Physo129542;rank=2 scaffold_8 . exon 265634 266035 . + . ID=Physo129542.2;Parent=Physo129542;constitutive=1;rank=2 scaffold_8 . repeat_region 273061 273339 . - . description=GypsyPi-1c_I-int scaffold_8 . repeat_region 273688 274102 . + . description=GypsyPi-1c_I-int scaffold_8 . repeat_region 274227 274324 . - . description=SSU-rRNA_Tps scaffold_8 . repeat_region 276245 277348 . + . description=GypsyPi-1c_I-int scaffold_8 . repeat_region 277618 277896 . + . description=GypsyPi-1c_I-int scaffold_8 ensembl protein_coding_gene 268350 268775 . - . ID=Physo112222;biotype=protein_coding;external_name=estExt_Genewise1.C_80181;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 268350 268775 . - . ID=Physo112222;Parent=Physo112222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 268350 268718 . - 0 ID=Physo112222;Parent=Physo112222;rank=1 scaffold_8 . exon 268350 268775 . - . ID=Physo112222.1;Parent=Physo112222;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 271725 273044 . + . ID=Physo129543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80054;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 271725 273044 . + . ID=Physo129543;Parent=Physo129543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 271725 273044 . + 0 ID=Physo129543;Parent=Physo129543;rank=1 scaffold_8 . exon 271725 273044 . + . ID=Physo129543.1;Parent=Physo129543;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 273688 274149 . + . ID=Physo129544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80055;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 273688 274149 . + . ID=Physo129544;Parent=Physo129544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 273688 274149 . + 0 ID=Physo129544;Parent=Physo129544;rank=1 scaffold_8 . exon 273688 274149 . + . ID=Physo129544.1;Parent=Physo129544;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 276379 277660 . + . ID=Physo129545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80056;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 276379 277660 . + . ID=Physo129545;Parent=Physo129545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 276379 277161 . + 0 ID=Physo129545;Parent=Physo129545;rank=1 scaffold_8 . exon 276379 277161 . + . ID=Physo129545.1;Parent=Physo129545;constitutive=1;rank=1 scaffold_8 . CDS 277204 277613 . + 0 ID=Physo129545;Parent=Physo129545;rank=2 scaffold_8 . exon 277204 277613 . + . ID=Physo129545.2;Parent=Physo129545;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 277654 277660 . + 0 ID=Physo129545;Parent=Physo129545;rank=3 scaffold_8 . exon 277654 277660 . + . ID=Physo129545.3;Parent=Physo129545;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 ensembl protein_coding_gene 277913 279232 . - . ID=Physo129546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80057;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 277913 279232 . - . ID=Physo129546;Parent=Physo129546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 277913 279232 . - 0 ID=Physo129546;Parent=Physo129546;rank=1 scaffold_8 . exon 277913 279232 . - . ID=Physo129546.1;Parent=Physo129546;constitutive=1;rank=1 scaffold_8 . biological_region 278512 278516 0.999 - . logic_name=eponine scaffold_8 . biological_region 278875 278879 0.999 + . logic_name=eponine scaffold_8 . biological_region 279162 279163 0.999 - . logic_name=eponine scaffold_8 . biological_region 279178 279183 0.999 - . logic_name=eponine scaffold_8 . biological_region 280068 280070 0.999 + . logic_name=eponine scaffold_8 . biological_region 280137 280138 0.999 + . logic_name=eponine scaffold_8 . biological_region 280157 280162 0.999 - . logic_name=eponine scaffold_8 . biological_region 280175 280182 0.999 - . logic_name=eponine scaffold_8 . biological_region 280423 280428 0.999 + . logic_name=eponine scaffold_8 . biological_region 280446 280449 0.999 - . logic_name=eponine scaffold_8 . biological_region 280577 280577 0.999 - . logic_name=eponine scaffold_8 . biological_region 280929 280929 0.999 + . logic_name=eponine scaffold_8 . biological_region 281087 281090 0.999 - . logic_name=eponine scaffold_8 . biological_region 281223 281226 0.999 - . logic_name=eponine scaffold_8 . biological_region 281757 281761 0.999 - . logic_name=eponine scaffold_8 . biological_region 281802 281811 0.999 - . logic_name=eponine scaffold_8 . biological_region 282725 282725 0.999 + . logic_name=eponine scaffold_8 . biological_region 282736 282739 0.999 + . logic_name=eponine scaffold_8 . repeat_region 282843 282906 . ? . description=trf scaffold_8 . biological_region 282883 282886 0.999 + . logic_name=eponine scaffold_8 . biological_region 282890 282894 0.999 - . logic_name=eponine scaffold_8 . biological_region 282907 282913 0.999 + . logic_name=eponine scaffold_8 . biological_region 282916 282917 0.999 - . logic_name=eponine scaffold_8 . biological_region 282940 282941 0.999 - . logic_name=eponine scaffold_8 . biological_region 282964 282965 0.999 - . logic_name=eponine scaffold_8 . biological_region 283002 283007 0.999 - . logic_name=eponine scaffold_8 . biological_region 283170 283172 0.999 + . logic_name=eponine scaffold_8 . biological_region 283309 283315 0.999 - . logic_name=eponine scaffold_8 . repeat_region 285187 285194 . ? . description=dust scaffold_8 . repeat_region 285828 285835 . ? . description=dust scaffold_8 ensembl protein_coding_gene 279878 283294 . - . ID=Physo129547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80058;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 279878 283294 . - . ID=Physo129547;Parent=Physo129547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 279878 281185 . - . ID=Physo129547.2;Parent=Physo129547;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_8 . CDS 280010 281185 . - 0 ID=Physo129547;Parent=Physo129547;rank=2 scaffold_8 . CDS 281273 283294 . - 0 ID=Physo129547;Parent=Physo129547;rank=1 scaffold_8 . exon 281273 283294 . - . ID=Physo129547.1;Parent=Physo129547;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 288672 291088 . - . ID=Physo108393;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80003;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 288672 291088 . - . ID=Physo108393;Parent=Physo108393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 288672 291088 . - . ID=Physo108393.1;Parent=Physo108393;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 . CDS 288794 291088 . - 0 ID=Physo108393;Parent=Physo108393;rank=1 scaffold_8 ensembl protein_coding_gene 291960 292833 . + . ID=Physo129549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80060;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 291960 292833 . + . ID=Physo129549;Parent=Physo129549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 291960 292679 . + 0 ID=Physo129549;Parent=Physo129549;rank=1 scaffold_8 . exon 291960 292679 . + . ID=Physo129549.1;Parent=Physo129549;constitutive=1;rank=1 scaffold_8 . CDS 292807 292833 . + 0 ID=Physo129549;Parent=Physo129549;rank=2 scaffold_8 . exon 292807 292833 . + . ID=Physo129549.2;Parent=Physo129549;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 295588 297360 . + . ID=Physo129550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80061;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 295588 297360 . + . ID=Physo129550;Parent=Physo129550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 295588 297360 . + 0 ID=Physo129550;Parent=Physo129550;rank=1 scaffold_8 . exon 295588 297360 . + . ID=Physo129550.1;Parent=Physo129550;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 297793 298359 . - . ID=Physo129551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80062;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 297793 298359 . - . ID=Physo129551;Parent=Physo129551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 297793 298359 . - 0 ID=Physo129551;Parent=Physo129551;rank=1 scaffold_8 . exon 297793 298359 . - . ID=Physo129551.1;Parent=Physo129551;constitutive=1;rank=1 scaffold_8 . biological_region 298921 298921 0.999 + . logic_name=eponine scaffold_8 . biological_region 299059 299061 0.999 - . logic_name=eponine scaffold_8 . biological_region 299089 299089 0.999 + . logic_name=eponine scaffold_8 . biological_region 299267 299268 0.999 - . logic_name=eponine scaffold_8 . biological_region 300147 300148 0.999 - . logic_name=eponine scaffold_8 . biological_region 300186 300189 0.999 - . logic_name=eponine scaffold_8 . biological_region 300371 300375 0.999 + . logic_name=eponine scaffold_8 . biological_region 301432 301435 0.999 + . logic_name=eponine scaffold_8 . biological_region 301488 301490 0.999 - . logic_name=eponine scaffold_8 . biological_region 301764 301767 0.999 - . logic_name=eponine scaffold_8 . repeat_region 302947 302973 . ? . description=trf scaffold_8 . repeat_region 303165 303194 . ? . description=trf scaffold_8 . repeat_region 303241 303273 . ? . description=trf scaffold_8 . repeat_region 303351 303414 . ? . description=dust scaffold_8 . biological_region 303520 303527 0.999 - . logic_name=eponine scaffold_8 . biological_region 304027 304030 0.999 - . logic_name=eponine scaffold_8 . biological_region 304187 304188 0.999 + . logic_name=eponine scaffold_8 . biological_region 304240 304243 0.999 + . logic_name=eponine scaffold_8 . biological_region 307194 307195 0.999 + . logic_name=eponine scaffold_8 . biological_region 307286 307288 0.999 + . logic_name=eponine scaffold_8 . biological_region 307351 307354 0.999 - . logic_name=eponine scaffold_8 . biological_region 307404 307409 0.999 + . logic_name=eponine scaffold_8 . biological_region 307416 307423 0.999 - . logic_name=eponine scaffold_8 . biological_region 307434 307437 0.999 + . logic_name=eponine scaffold_8 . biological_region 307567 307572 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 298885 300513 . + . ID=Physo129552;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80063;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 298885 300513 . + . ID=Physo129552;Parent=Physo129552;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 298885 300453 . + 0 ID=Physo129552;Parent=Physo129552;rank=1 scaffold_8 . exon 298885 300513 . + . ID=Physo129552.1;Parent=Physo129552;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 301439 302243 . + . ID=Physo129553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80064;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 301439 302243 . + . ID=Physo129553;Parent=Physo129553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 301439 301569 . + 0 ID=Physo129553;Parent=Physo129553;rank=1 scaffold_8 . exon 301439 301569 . + . ID=Physo129553.1;Parent=Physo129553;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 301652 302243 . + 0 ID=Physo129553;Parent=Physo129553;rank=2 scaffold_8 . exon 301652 302243 . + . ID=Physo129553.2;Parent=Physo129553;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 ensembl protein_coding_gene 302597 303603 . - . ID=Physo129554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80065;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 302597 303603 . - . ID=Physo129554;Parent=Physo129554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 302597 303603 . - . ID=Physo129554.1;Parent=Physo129554;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 . CDS 302911 303603 . - 0 ID=Physo129554;Parent=Physo129554;rank=1 scaffold_8 ensembl protein_coding_gene 304039 304930 . + . ID=Physo129555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80066;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 304039 304930 . + . ID=Physo129555;Parent=Physo129555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 304039 304157 . + . ID=Physo129555.1;Parent=Physo129555;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_8 . exon 304315 304525 . + . ID=Physo129555.2;Parent=Physo129555;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_8 . CDS 304342 304525 . + 0 ID=Physo129555;Parent=Physo129555;rank=1 scaffold_8 . CDS 304608 304654 . + 0 ID=Physo129555;Parent=Physo129555;rank=2 scaffold_8 . exon 304608 304654 . + . ID=Physo129555.3;Parent=Physo129555;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 304724 304930 . + 0 ID=Physo129555;Parent=Physo129555;rank=3 scaffold_8 . exon 304724 304930 . + . ID=Physo129555.4;Parent=Physo129555;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 305249 306913 . - . ID=Physo129556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80067;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 305249 306913 . - . ID=Physo129556;Parent=Physo129556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 305249 306913 . - 0 ID=Physo129556;Parent=Physo129556;rank=1 scaffold_8 . exon 305249 306913 . - . ID=Physo129556.1;Parent=Physo129556;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 307193 312250 . + . ID=Physo155800;biotype=protein_coding;external_name=C_scaffold_8000006;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 307193 312250 . + . ID=Physo155800;Parent=Physo155800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 307193 308107 . + 0 ID=Physo155800;Parent=Physo155800;rank=1 scaffold_8 . exon 307193 308107 . + . ID=Physo155800.1;Parent=Physo155800;constitutive=1;rank=1 scaffold_8 . CDS 308204 308560 . + 0 ID=Physo155800;Parent=Physo155800;rank=2 scaffold_8 . CDS 308600 308864 . + 0 ID=Physo155800;Parent=Physo155800;rank=3 scaffold_8 . CDS 309541 309741 . + 0 ID=Physo155800;Parent=Physo155800;rank=4 scaffold_8 . CDS 309835 310416 . + 0 ID=Physo155800;Parent=Physo155800;rank=5 scaffold_8 . CDS 310444 310923 . + 0 ID=Physo155800;Parent=Physo155800;rank=6 scaffold_8 . CDS 310951 311216 . + 0 ID=Physo155800;Parent=Physo155800;rank=7 scaffold_8 . CDS 311559 311750 . + 0 ID=Physo155800;Parent=Physo155800;rank=8 scaffold_8 . CDS 312048 312250 . + 0 ID=Physo155800;Parent=Physo155800;rank=9 scaffold_8 ensembl protein_coding_gene 313720 314544 . - . ID=Physo129558;biotype=protein_coding;description=PsAvh181 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Q8];external_name=estExt_fgenesh1_pg.C_80069;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 313720 314544 . - . ID=Physo129558;Parent=Physo129558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 313720 314544 . - 0 ID=Physo129558;Parent=Physo129558;rank=1 scaffold_8 . exon 313720 314544 . - . ID=Physo129558.1;Parent=Physo129558;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 315585 319382 . + . ID=Physo129559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80070;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 315585 319382 . + . ID=Physo129559;Parent=Physo129559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 315585 317230 . + 0 ID=Physo129559;Parent=Physo129559;rank=1 scaffold_8 . exon 315585 317230 . + . ID=Physo129559.1;Parent=Physo129559;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 317559 317615 . + 0 ID=Physo129559;Parent=Physo129559;rank=2 scaffold_8 . exon 317559 317615 . + . ID=Physo129559.2;Parent=Physo129559;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 318179 318272 . + 0 ID=Physo129559;Parent=Physo129559;rank=3 scaffold_8 . CDS 318441 318486 . + 0 ID=Physo129559;Parent=Physo129559;rank=4 scaffold_8 . CDS 318580 319382 . + 0 ID=Physo129559;Parent=Physo129559;rank=5 scaffold_8 . exon 308204 308560 . + . ID=Physo155800.2;Parent=Physo155800;constitutive=1;rank=2 scaffold_8 . exon 308600 308864 . + . ID=Physo155800.3;Parent=Physo155800;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . exon 309541 309741 . + . ID=Physo155800.4;Parent=Physo155800;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_8 . exon 309835 310416 . + . ID=Physo155800.5;Parent=Physo155800;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_8 . exon 310444 310923 . + . ID=Physo155800.6;Parent=Physo155800;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_8 . exon 310951 311216 . + . ID=Physo155800.7;Parent=Physo155800;constitutive=1;ensembl_phase=1;rank=7 scaffold_8 . exon 311559 311750 . + . ID=Physo155800.8;Parent=Physo155800;constitutive=1;rank=8 scaffold_8 . exon 312048 312250 . + . ID=Physo155800.9;Parent=Physo155800;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_8 . biological_region 322702 322704 0.999 + . logic_name=eponine scaffold_8 . biological_region 324534 324537 0.999 - . logic_name=eponine scaffold_8 . biological_region 325640 325644 0.999 + . logic_name=eponine scaffold_8 . biological_region 325816 325816 0.999 - . logic_name=eponine scaffold_8 . biological_region 325869 325874 0.999 + . logic_name=eponine scaffold_8 . repeat_region 325994 326001 . ? . description=dust scaffold_8 . repeat_region 326037 326055 . ? . description=dust scaffold_8 . repeat_region 326117 326422 . + . description=GypsyPi-1c_LTR scaffold_8 . repeat_region 326423 328423 . + . description=GypsyPi-1c_I-int scaffold_8 . biological_region 326667 326668 0.999 + . logic_name=eponine scaffold_8 . biological_region 326924 326928 0.999 + . logic_name=eponine scaffold_8 . biological_region 326943 326946 0.999 - . logic_name=eponine scaffold_8 . exon 318179 318272 . + . ID=Physo129559.3;Parent=Physo129559;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . exon 318441 318486 . + . ID=Physo129559.4;Parent=Physo129559;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_8 . exon 318580 319382 . + . ID=Physo129559.5;Parent=Physo129559;constitutive=1;ensembl_phase=1;rank=5 scaffold_8 ensembl protein_coding_gene 320302 321447 . + . ID=Physo129560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80071;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 320302 321447 . + . ID=Physo129560;Parent=Physo129560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 320302 321447 . + 0 ID=Physo129560;Parent=Physo129560;rank=1 scaffold_8 . exon 320302 321447 . + . ID=Physo129560.1;Parent=Physo129560;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 321967 324076 . + . ID=Physo129561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80072;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 321967 324076 . + . ID=Physo129561;Parent=Physo129561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 321967 322015 . + 0 ID=Physo129561;Parent=Physo129561;rank=1 scaffold_8 . exon 321967 322015 . + . ID=Physo129561.1;Parent=Physo129561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 322055 322806 . + 0 ID=Physo129561;Parent=Physo129561;rank=2 scaffold_8 . exon 322055 322806 . + . ID=Physo129561.2;Parent=Physo129561;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 323474 323871 . + 0 ID=Physo129561;Parent=Physo129561;rank=3 scaffold_8 . exon 323474 323871 . + . ID=Physo129561.3;Parent=Physo129561;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_8 . CDS 323959 324076 . + 0 ID=Physo129561;Parent=Physo129561;rank=4 scaffold_8 . exon 323959 324076 . + . ID=Physo129561.4;Parent=Physo129561;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 ensembl protein_coding_gene 326510 330998 . + . ID=Physo129562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80073;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 326510 330998 . + . ID=Physo129562;Parent=Physo129562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 326510 327458 . + 0 ID=Physo129562;Parent=Physo129562;rank=1 scaffold_8 . exon 326510 327458 . + . ID=Physo129562.1;Parent=Physo129562;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 327587 327941 . + 0 ID=Physo129562;Parent=Physo129562;rank=2 scaffold_8 . exon 327587 327941 . + . ID=Physo129562.2;Parent=Physo129562;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 328044 328176 . + 0 ID=Physo129562;Parent=Physo129562;rank=3 scaffold_8 . CDS 328219 328562 . + 0 ID=Physo129562;Parent=Physo129562;rank=4 scaffold_8 . CDS 328627 329518 . + 0 ID=Physo129562;Parent=Physo129562;rank=5 scaffold_8 . CDS 329606 330767 . + 0 ID=Physo129562;Parent=Physo129562;rank=6 scaffold_8 . CDS 330979 330998 . + 0 ID=Physo129562;Parent=Physo129562;rank=7 scaffold_8 . repeat_region 328258 328423 . ? . description=trf scaffold_8 . repeat_region 332977 333023 . ? . description=trf scaffold_8 . exon 328044 328176 . + . ID=Physo129562.3;Parent=Physo129562;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . exon 328219 328562 . + . ID=Physo129562.4;Parent=Physo129562;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . exon 328627 329518 . + . ID=Physo129562.5;Parent=Physo129562;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . exon 329606 330767 . + . ID=Physo129562.6;Parent=Physo129562;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_8 . exon 330979 330998 . + . ID=Physo129562.7;Parent=Physo129562;constitutive=1;ensembl_phase=1;rank=7 scaffold_8 ensembl protein_coding_gene 331369 334487 . - . ID=Physo129563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80074;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 331369 334487 . - . ID=Physo129563;Parent=Physo129563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 331369 332788 . - 0 ID=Physo129563;Parent=Physo129563;rank=5 scaffold_8 . exon 331369 332788 . - . ID=Physo129563.5;Parent=Physo129563;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 332816 333269 . - 0 ID=Physo129563;Parent=Physo129563;rank=4 scaffold_8 . exon 332816 333269 . - . ID=Physo129563.4;Parent=Physo129563;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 333867 333954 . - 0 ID=Physo129563;Parent=Physo129563;rank=3 scaffold_8 . exon 333867 333954 . - . ID=Physo129563.3;Parent=Physo129563;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 334038 334080 . - 0 ID=Physo129563;Parent=Physo129563;rank=2 scaffold_8 . exon 334038 334080 . - . ID=Physo129563.2;Parent=Physo129563;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 334162 334487 . - 0 ID=Physo129563;Parent=Physo129563;rank=1 scaffold_8 . exon 334162 334487 . - . ID=Physo129563.1;Parent=Physo129563;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . biological_region 338456 338461 0.999 + . logic_name=eponine scaffold_8 . biological_region 338467 338468 0.999 + . logic_name=eponine scaffold_8 . biological_region 341083 341085 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 338240 340677 . + . ID=Physo129564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80075;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 338240 340677 . + . ID=Physo129564;Parent=Physo129564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 338240 338279 . + 0 ID=Physo129564;Parent=Physo129564;rank=1 scaffold_8 . exon 338240 338279 . + . ID=Physo129564.1;Parent=Physo129564;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 338324 338366 . + 0 ID=Physo129564;Parent=Physo129564;rank=2 scaffold_8 . exon 338324 338366 . + . ID=Physo129564.2;Parent=Physo129564;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 338430 339422 . + 0 ID=Physo129564;Parent=Physo129564;rank=3 scaffold_8 . exon 338430 339422 . + . ID=Physo129564.3;Parent=Physo129564;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_8 . CDS 339597 340677 . + 0 ID=Physo129564;Parent=Physo129564;rank=4 scaffold_8 . exon 339597 340677 . + . ID=Physo129564.4;Parent=Physo129564;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 ensembl protein_coding_gene 340890 341642 . + . ID=Physo129565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80076;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 340890 341642 . + . ID=Physo129565;Parent=Physo129565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 340890 341642 . + 0 ID=Physo129565;Parent=Physo129565;rank=1 scaffold_8 . exon 340890 341642 . + . ID=Physo129565.1;Parent=Physo129565;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 341871 346256 . - . ID=Physo129566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80077;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 341871 346256 . - . ID=Physo129566;Parent=Physo129566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 341871 343709 . - 0 ID=Physo129566;Parent=Physo129566;rank=5 scaffold_8 . exon 341871 343709 . - . ID=Physo129566.5;Parent=Physo129566;constitutive=1;rank=5 scaffold_8 . CDS 343876 343897 . - 0 ID=Physo129566;Parent=Physo129566;rank=4 scaffold_8 . exon 343876 343897 . - . ID=Physo129566.4;Parent=Physo129566;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 344404 344656 . - 0 ID=Physo129566;Parent=Physo129566;rank=3 scaffold_8 . exon 344404 344656 . - . ID=Physo129566.3;Parent=Physo129566;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_8 . CDS 345098 345533 . - 0 ID=Physo129566;Parent=Physo129566;rank=2 scaffold_8 . exon 345098 345533 . - . ID=Physo129566.2;Parent=Physo129566;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 345618 346256 . - 0 ID=Physo129566;Parent=Physo129566;rank=1 scaffold_8 . exon 345618 346256 . - . ID=Physo129566.1;Parent=Physo129566;constitutive=1;rank=1 scaffold_8 . repeat_region 352329 352336 . ? . description=dust scaffold_8 . repeat_region 355541 355617 . ? . description=trf scaffold_8 . repeat_region 355565 355624 . ? . description=trf scaffold_8 ensembl protein_coding_gene 348960 349799 . + . ID=Physo129567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80078;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 348960 349799 . + . ID=Physo129567;Parent=Physo129567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 348960 349799 . + 0 ID=Physo129567;Parent=Physo129567;rank=1 scaffold_8 . exon 348960 349799 . + . ID=Physo129567.1;Parent=Physo129567;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 349938 352121 . - . ID=Physo129568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80079;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 349938 352121 . - . ID=Physo129568;Parent=Physo129568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 349938 350075 . - 0 ID=Physo129568;Parent=Physo129568;rank=3 scaffold_8 . exon 349938 350075 . - . ID=Physo129568.3;Parent=Physo129568;constitutive=1;rank=3 scaffold_8 . CDS 350115 351293 . - 0 ID=Physo129568;Parent=Physo129568;rank=2 scaffold_8 . exon 350115 351293 . - . ID=Physo129568.2;Parent=Physo129568;constitutive=1;rank=2 scaffold_8 . CDS 351327 352121 . - 0 ID=Physo129568;Parent=Physo129568;rank=1 scaffold_8 . exon 351327 352121 . - . ID=Physo129568.1;Parent=Physo129568;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 352884 355738 . - . ID=Physo129569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80080;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 352884 355738 . - . ID=Physo129569;Parent=Physo129569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 352884 353077 . - 0 ID=Physo129569;Parent=Physo129569;rank=3 scaffold_8 . exon 352884 353077 . - . ID=Physo129569.3;Parent=Physo129569;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 353105 355040 . - 0 ID=Physo129569;Parent=Physo129569;rank=2 scaffold_8 . exon 353105 355040 . - . ID=Physo129569.2;Parent=Physo129569;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 355514 355738 . - 0 ID=Physo129569;Parent=Physo129569;rank=1 scaffold_8 . exon 355514 355738 . - . ID=Physo129569.1;Parent=Physo129569;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 355794 360483 . - . ID=Physo129570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80081;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 355794 360483 . - . ID=Physo129570;Parent=Physo129570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 355794 360483 . - . ID=Physo129570.1;Parent=Physo129570;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 . CDS 355849 360483 . - 0 ID=Physo129570;Parent=Physo129570;rank=1 scaffold_8 . biological_region 360458 360459 0.999 - . logic_name=eponine scaffold_8 . biological_region 360478 360481 0.999 - . logic_name=eponine scaffold_8 . biological_region 361137 361141 0.999 + . logic_name=eponine scaffold_8 . biological_region 362144 362148 0.999 + . logic_name=eponine scaffold_8 . biological_region 363218 363221 0.999 - . logic_name=eponine scaffold_8 . biological_region 363348 363351 0.999 + . logic_name=eponine scaffold_8 . biological_region 363833 363836 0.999 + . logic_name=eponine scaffold_8 . biological_region 363839 363844 0.999 - . logic_name=eponine scaffold_8 . biological_region 363855 363858 0.999 - . logic_name=eponine scaffold_8 . biological_region 364050 364056 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 362896 364335 . + . ID=Physo129572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80083;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 362896 364335 . + . ID=Physo129572;Parent=Physo129572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 362896 363527 . + . ID=Physo129572.1;Parent=Physo129572;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_8 . CDS 362926 363527 . + 0 ID=Physo129572;Parent=Physo129572;rank=1 scaffold_8 . CDS 363596 363617 . + 0 ID=Physo129572;Parent=Physo129572;rank=2 scaffold_8 . exon 363596 363617 . + . ID=Physo129572.2;Parent=Physo129572;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 363696 363916 . + 0 ID=Physo129572;Parent=Physo129572;rank=3 scaffold_8 . exon 363696 363916 . + . ID=Physo129572.3;Parent=Physo129572;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_8 . CDS 363954 364335 . + 0 ID=Physo129572;Parent=Physo129572;rank=4 scaffold_8 . exon 363954 364335 . + . ID=Physo129572.4;Parent=Physo129572;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 ensembl protein_coding_gene 364409 365683 . - . ID=Physo129573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80084;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 364409 365683 . - . ID=Physo129573;Parent=Physo129573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 364409 364639 . - . ID=Physo129573.2;Parent=Physo129573;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_8 . CDS 364575 364639 . - 0 ID=Physo129573;Parent=Physo129573;rank=2 scaffold_8 . CDS 364843 365683 . - 0 ID=Physo129573;Parent=Physo129573;rank=1 scaffold_8 . exon 364843 365683 . - . ID=Physo129573.1;Parent=Physo129573;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 367118 368452 . + . ID=Physo129574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80085;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 367118 368452 . + . ID=Physo129574;Parent=Physo129574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 367118 368452 . + . ID=Physo129574.1;Parent=Physo129574;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 367183 368343 . + 0 ID=Physo129574;Parent=Physo129574;rank=1 scaffold_8 ensembl protein_coding_gene 361885 362517 . - . ID=Physo155802;biotype=protein_coding;external_name=C_scaffold_8000008;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 361885 362517 . - . ID=Physo155802;Parent=Physo155802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 361885 362517 . - 0 ID=Physo155802;Parent=Physo155802;rank=1 scaffold_8 . exon 361885 362517 . - . ID=Physo155802.1;Parent=Physo155802;constitutive=1;rank=1 scaffold_8 . repeat_region 368679 368690 . ? . description=dust scaffold_8 . repeat_region 369482 369521 . ? . description=dust scaffold_8 . repeat_region 369484 369521 . ? . description=trf scaffold_8 . repeat_region 370217 370224 . ? . description=dust scaffold_8 ensembl protein_coding_gene 371079 372239 . + . ID=Physo129575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80086;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 371079 372239 . + . ID=Physo129575;Parent=Physo129575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 371079 372239 . + 0 ID=Physo129575;Parent=Physo129575;rank=1 scaffold_8 . exon 371079 372239 . + . ID=Physo129575.1;Parent=Physo129575;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 372714 376088 . + . ID=Physo129576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80087;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 372714 376088 . + . ID=Physo129576;Parent=Physo129576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 372714 376088 . + 0 ID=Physo129576;Parent=Physo129576;rank=1 scaffold_8 . exon 372714 376088 . + . ID=Physo129576.1;Parent=Physo129576;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 376833 380672 . + . ID=Physo129578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80089;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 376833 380672 . + . ID=Physo129578;Parent=Physo129578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 376833 378289 . + 0 ID=Physo129578;Parent=Physo129578;rank=1 scaffold_8 . exon 376833 378289 . + . ID=Physo129578.1;Parent=Physo129578;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 378382 379857 . + 0 ID=Physo129578;Parent=Physo129578;rank=2 scaffold_8 . CDS 379958 380672 . + 0 ID=Physo129578;Parent=Physo129578;rank=3 scaffold_8 . biological_region 378541 378543 0.999 + . logic_name=eponine scaffold_8 . biological_region 378580 378583 0.999 + . logic_name=eponine scaffold_8 . biological_region 378610 378615 0.999 + . logic_name=eponine scaffold_8 . biological_region 378620 378623 0.999 + . logic_name=eponine scaffold_8 . biological_region 378679 378685 0.999 - . logic_name=eponine scaffold_8 . biological_region 387027 387030 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 385963 389229 . + . ID=Physo108395;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80005;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 385963 389229 . + . ID=Physo108395;Parent=Physo108395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 385963 386010 . + 0 ID=Physo108395;Parent=Physo108395;rank=1 scaffold_8 . exon 385963 386010 . + . ID=Physo108395.1;Parent=Physo108395;constitutive=1;rank=1 scaffold_8 . CDS 386710 389229 . + 0 ID=Physo108395;Parent=Physo108395;rank=2 scaffold_8 . exon 386710 389229 . + . ID=Physo108395.2;Parent=Physo108395;constitutive=1;rank=2 scaffold_8 . exon 378382 379857 . + . ID=Physo129578.2;Parent=Physo129578;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . exon 379958 380672 . + . ID=Physo129578.3;Parent=Physo129578;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 ensembl protein_coding_gene 385288 385851 . + . ID=Physo129579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80090;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 385288 385851 . + . ID=Physo129579;Parent=Physo129579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 385288 385851 . + 0 ID=Physo129579;Parent=Physo129579;rank=1 scaffold_8 . exon 385288 385851 . + . ID=Physo129579.1;Parent=Physo129579;constitutive=1;rank=1 scaffold_8 . repeat_region 392064 392083 . ? . description=dust scaffold_8 . repeat_region 392268 392387 . ? . description=dust scaffold_8 ensembl protein_coding_gene 395004 396070 . - . ID=Physo112076;biotype=protein_coding;external_name=estExt_Genewise1.C_80035;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 395004 396070 . - . ID=Physo112076;Parent=Physo112076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 395004 395133 . - . ID=Physo112076.4;Parent=Physo112076;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_8 . exon 395227 395513 . - . ID=Physo112076.3;Parent=Physo112076;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_8 . exon 395594 395700 . - . ID=Physo112076.2;Parent=Physo112076;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_8 . CDS 395595 395700 . - 0 ID=Physo112076;Parent=Physo112076;rank=2 scaffold_8 . CDS 395791 396068 . - 0 ID=Physo112076;Parent=Physo112076;rank=1 scaffold_8 . exon 395791 396070 . - . ID=Physo112076.1;Parent=Physo112076;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 391906 394885 . + . ID=Physo129581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80092;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 391906 394885 . + . ID=Physo129581;Parent=Physo129581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 391906 394788 . + 0 ID=Physo129581;Parent=Physo129581;rank=1 scaffold_8 . exon 391906 394885 . + . ID=Physo129581.1;Parent=Physo129581;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 401983 404867 . + . ID=Physo129583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80094;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 401983 404867 . + . ID=Physo129583;Parent=Physo129583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 401983 403451 . + 0 ID=Physo129583;Parent=Physo129583;rank=1 scaffold_8 . exon 401983 403451 . + . ID=Physo129583.1;Parent=Physo129583;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 403487 403507 . + 0 ID=Physo129583;Parent=Physo129583;rank=2 scaffold_8 . exon 403487 403507 . + . ID=Physo129583.2;Parent=Physo129583;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 403748 404274 . + 0 ID=Physo129583;Parent=Physo129583;rank=3 scaffold_8 . exon 403748 404274 . + . ID=Physo129583.3;Parent=Physo129583;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 404356 404867 . + 0 ID=Physo129583;Parent=Physo129583;rank=4 scaffold_8 . exon 404356 404867 . + . ID=Physo129583.4;Parent=Physo129583;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . biological_region 410833 410838 0.999 - . logic_name=eponine scaffold_8 . repeat_region 411120 411366 . ? . description=trf scaffold_8 . biological_region 411349 411351 0.999 + . logic_name=eponine scaffold_8 . biological_region 411417 411421 0.999 + . logic_name=eponine scaffold_8 . biological_region 411445 411447 0.999 - . logic_name=eponine scaffold_8 . biological_region 411671 411673 0.999 + . logic_name=eponine scaffold_8 . repeat_region 412018 413392 . + . description=GypsyPi-1c_I-int scaffold_8 . biological_region 413525 413526 0.999 - . logic_name=eponine scaffold_8 . repeat_region 413627 413816 . + . description=GypsyPi-1c_I-int scaffold_8 . biological_region 416431 416433 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 410708 413412 . + . ID=Physo129584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80095;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 410708 413412 . + . ID=Physo129584;Parent=Physo129584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 410708 411221 . + 0 ID=Physo129584;Parent=Physo129584;rank=1 scaffold_8 . exon 410708 411221 . + . ID=Physo129584.1;Parent=Physo129584;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 411432 412030 . + 0 ID=Physo129584;Parent=Physo129584;rank=2 scaffold_8 . exon 411432 412030 . + . ID=Physo129584.2;Parent=Physo129584;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 412129 413412 . + 0 ID=Physo129584;Parent=Physo129584;rank=3 scaffold_8 . exon 412129 413412 . + . ID=Physo129584.3;Parent=Physo129584;constitutive=1;rank=3 scaffold_8 . repeat_region 431176 431183 . ? . description=dust scaffold_8 . repeat_region 432133 432191 . ? . description=trf scaffold_8 . repeat_region 432930 432959 . ? . description=dust scaffold_8 . repeat_region 432930 432959 . ? . description=trf scaffold_8 . biological_region 433094 433097 0.999 + . logic_name=eponine scaffold_8 . repeat_region 433405 433424 . ? . description=dust scaffold_8 . repeat_region 433405 433424 . ? . description=trf scaffold_8 . repeat_region 433591 433611 . ? . description=dust scaffold_8 . biological_region 433859 433863 0.999 - . logic_name=eponine scaffold_8 . repeat_region 435912 435920 . ? . description=dust scaffold_8 ensembl protein_coding_gene 433222 438432 . + . ID=Physo129585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80096;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 433222 438432 . + . ID=Physo129585;Parent=Physo129585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 433222 438432 . + 0 ID=Physo129585;Parent=Physo129585;rank=1 scaffold_8 . exon 433222 438432 . + . ID=Physo129585.1;Parent=Physo129585;constitutive=1;rank=1 scaffold_8 . repeat_region 444419 444581 . - . description=GypsyPi-1c_LTR scaffold_8 . repeat_region 446086 446164 . - . description=GypsyPi-1c_I-int scaffold_8 ensembl protein_coding_gene 438682 442305 . + . ID=Physo129586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80097;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 438682 442305 . + . ID=Physo129586;Parent=Physo129586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 438682 442305 . + 0 ID=Physo129586;Parent=Physo129586;rank=1 scaffold_8 . exon 438682 442305 . + . ID=Physo129586.1;Parent=Physo129586;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 442332 444004 . - . ID=Physo129587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80098;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 442332 444004 . - . ID=Physo129587;Parent=Physo129587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 442332 442931 . - 0 ID=Physo129587;Parent=Physo129587;rank=2 scaffold_8 . exon 442332 442931 . - . ID=Physo129587.2;Parent=Physo129587;constitutive=1;rank=2 scaffold_8 . CDS 443162 444004 . - 0 ID=Physo129587;Parent=Physo129587;rank=1 scaffold_8 . exon 443162 444004 . - . ID=Physo129587.1;Parent=Physo129587;constitutive=1;rank=1 scaffold_8 . biological_region 451537 451538 0.999 + . logic_name=eponine scaffold_8 . biological_region 452612 452615 0.999 + . logic_name=eponine scaffold_8 . biological_region 452657 452664 0.999 - . logic_name=eponine scaffold_8 . biological_region 452677 452680 0.999 + . logic_name=eponine scaffold_8 . biological_region 452711 452719 0.999 - . logic_name=eponine scaffold_8 . biological_region 452771 452777 0.999 - . logic_name=eponine scaffold_8 . biological_region 452772 452773 0.999 + . logic_name=eponine scaffold_8 . biological_region 452938 452943 0.999 - . logic_name=eponine scaffold_8 . biological_region 452993 452996 0.999 + . logic_name=eponine scaffold_8 . biological_region 453009 453015 0.999 - . logic_name=eponine scaffold_8 . biological_region 453020 453025 0.999 + . logic_name=eponine scaffold_8 . biological_region 453720 453722 0.999 - . logic_name=eponine scaffold_8 . biological_region 453739 453741 0.999 - . logic_name=eponine scaffold_8 . biological_region 454984 454988 0.999 + . logic_name=eponine scaffold_8 . biological_region 455038 455039 0.999 + . logic_name=eponine scaffold_8 . biological_region 455132 455133 0.999 - . logic_name=eponine scaffold_8 . biological_region 455380 455380 0.999 + . logic_name=eponine scaffold_8 . biological_region 455413 455415 0.999 + . logic_name=eponine scaffold_8 . biological_region 455449 455452 0.999 + . logic_name=eponine scaffold_8 . biological_region 455568 455573 0.999 - . logic_name=eponine scaffold_8 . biological_region 455668 455670 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 446958 449972 . + . ID=Physo129588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80099;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 446958 449972 . + . ID=Physo129588;Parent=Physo129588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 446958 447876 . + 0 ID=Physo129588;Parent=Physo129588;rank=1 scaffold_8 . exon 446958 447876 . + . ID=Physo129588.1;Parent=Physo129588;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 447932 448162 . + 0 ID=Physo129588;Parent=Physo129588;rank=2 scaffold_8 . exon 447932 448162 . + . ID=Physo129588.2;Parent=Physo129588;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 448451 448608 . + 0 ID=Physo129588;Parent=Physo129588;rank=3 scaffold_8 . exon 448451 448608 . + . ID=Physo129588.3;Parent=Physo129588;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 448654 449013 . + 0 ID=Physo129588;Parent=Physo129588;rank=4 scaffold_8 . exon 448654 449013 . + . ID=Physo129588.4;Parent=Physo129588;constitutive=1;rank=4 scaffold_8 . CDS 449121 449972 . + 0 ID=Physo129588;Parent=Physo129588;rank=5 scaffold_8 . exon 449121 449972 . + . ID=Physo129588.5;Parent=Physo129588;constitutive=1;rank=5 scaffold_8 ensembl protein_coding_gene 450065 451104 . - . ID=Physo129589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80100;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 450065 451104 . - . ID=Physo129589;Parent=Physo129589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 450065 450690 . - 0 ID=Physo129589;Parent=Physo129589;rank=3 scaffold_8 . exon 450065 450690 . - . ID=Physo129589.3;Parent=Physo129589;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 450735 450762 . - 0 ID=Physo129589;Parent=Physo129589;rank=2 scaffold_8 . exon 450735 450762 . - . ID=Physo129589.2;Parent=Physo129589;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 450796 451104 . - 0 ID=Physo129589;Parent=Physo129589;rank=1 scaffold_8 . exon 450796 451104 . - . ID=Physo129589.1;Parent=Physo129589;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 452533 453951 . + . ID=Physo129590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80101;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 452533 453951 . + . ID=Physo129590;Parent=Physo129590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 452533 453918 . + 0 ID=Physo129590;Parent=Physo129590;rank=1 scaffold_8 . exon 452533 453951 . + . ID=Physo129590.1;Parent=Physo129590;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 454840 455749 . - . ID=Physo129591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80102;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 454840 455749 . - . ID=Physo129591;Parent=Physo129591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 454840 455706 . - 0 ID=Physo129591;Parent=Physo129591;rank=1 scaffold_8 . exon 454840 455749 . - . ID=Physo129591.1;Parent=Physo129591;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 460431 461873 . - . ID=Physo129592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80103;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 460431 461873 . - . ID=Physo129592;Parent=Physo129592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 460431 460498 . - 0 ID=Physo129592;Parent=Physo129592;rank=4 scaffold_8 . exon 460431 460498 . - . ID=Physo129592.4;Parent=Physo129592;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 460524 461448 . - 0 ID=Physo129592;Parent=Physo129592;rank=3 scaffold_8 . exon 460524 461448 . - . ID=Physo129592.3;Parent=Physo129592;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 461527 461659 . - 0 ID=Physo129592;Parent=Physo129592;rank=2 scaffold_8 . exon 461527 461659 . - . ID=Physo129592.2;Parent=Physo129592;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 461722 461873 . - 0 ID=Physo129592;Parent=Physo129592;rank=1 scaffold_8 . exon 461722 461873 . - . ID=Physo129592.1;Parent=Physo129592;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . repeat_region 467035 467372 . + . description=Gypsy-2-I_PI-int scaffold_8 . repeat_region 468050 468204 . + . description=GypsyPi-1c_I-int scaffold_8 . biological_region 470071 470071 0.999 + . logic_name=eponine scaffold_8 . biological_region 470151 470154 0.999 - . logic_name=eponine scaffold_8 . biological_region 470207 470208 0.999 + . logic_name=eponine scaffold_8 . repeat_region 470862 470881 . ? . description=trf scaffold_8 . repeat_region 471035 471042 . ? . description=dust scaffold_8 . repeat_region 474466 474478 . ? . description=dust scaffold_8 . biological_region 474848 474850 0.999 - . logic_name=eponine scaffold_8 . repeat_region 477571 477876 . + . description=GypsyPi-1c_LTR scaffold_8 . repeat_region 482548 482853 . + . description=GypsyPi-1c_LTR scaffold_8 . biological_region 489148 489150 0.999 + . logic_name=eponine scaffold_8 . biological_region 489325 489330 0.999 + . logic_name=eponine scaffold_8 . biological_region 489347 489348 0.999 + . logic_name=eponine scaffold_8 . biological_region 489358 489361 0.999 - . logic_name=eponine scaffold_8 . biological_region 489363 489366 0.999 + . logic_name=eponine scaffold_8 . biological_region 489378 489382 0.999 - . logic_name=eponine scaffold_8 . biological_region 489388 489392 0.999 - . logic_name=eponine scaffold_8 . biological_region 489441 489448 0.999 - . logic_name=eponine scaffold_8 . biological_region 489675 489675 0.999 + . logic_name=eponine scaffold_8 . biological_region 489733 489734 0.999 - . logic_name=eponine scaffold_8 . biological_region 489748 489755 0.999 + . logic_name=eponine scaffold_8 . biological_region 489753 489754 0.999 - . logic_name=eponine scaffold_8 . biological_region 489770 489776 0.999 - . logic_name=eponine scaffold_8 . biological_region 490210 490216 0.999 - . logic_name=eponine scaffold_8 . biological_region 490267 490269 0.999 - . logic_name=eponine scaffold_8 . biological_region 490293 490298 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 489196 490539 . + . ID=Physo108397;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80007;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 489196 490539 . + . ID=Physo108397;Parent=Physo108397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 489196 489549 . + 0 ID=Physo108397;Parent=Physo108397;rank=1 scaffold_8 . exon 489196 489549 . + . ID=Physo108397.1;Parent=Physo108397;constitutive=1;rank=1 scaffold_8 . CDS 489622 490539 . + 0 ID=Physo108397;Parent=Physo108397;rank=2 scaffold_8 . exon 489622 490539 . + . ID=Physo108397.2;Parent=Physo108397;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 488142 488999 . + . ID=Physo129593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80104;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 488142 488999 . + . ID=Physo129593;Parent=Physo129593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 488142 488999 . + 0 ID=Physo129593;Parent=Physo129593;rank=1 scaffold_8 . exon 488142 488999 . + . ID=Physo129593.1;Parent=Physo129593;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 490665 492885 . - . ID=Physo129595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80106;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 490665 492885 . - . ID=Physo129595;Parent=Physo129595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 490665 491251 . - 0 ID=Physo129595;Parent=Physo129595;rank=3 scaffold_8 . exon 490665 491251 . - . ID=Physo129595.3;Parent=Physo129595;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 491487 491801 . - 0 ID=Physo129595;Parent=Physo129595;rank=2 scaffold_8 . exon 491487 491801 . - . ID=Physo129595.2;Parent=Physo129595;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 492243 492885 . - 0 ID=Physo129595;Parent=Physo129595;rank=1 scaffold_8 . exon 492243 492885 . - . ID=Physo129595.1;Parent=Physo129595;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . repeat_region 497623 497630 . ? . description=dust scaffold_8 ensembl protein_coding_gene 505678 507177 . + . ID=Physo108398;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80008;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 505678 507177 . + . ID=Physo108398;Parent=Physo108398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 505678 507177 . + 0 ID=Physo108398;Parent=Physo108398;rank=1 scaffold_8 . exon 505678 507177 . + . ID=Physo108398.1;Parent=Physo108398;constitutive=1;rank=1 scaffold_8 . biological_region 506567 506570 0.999 + . logic_name=eponine scaffold_8 . repeat_region 510279 510332 . ? . description=trf scaffold_8 . repeat_region 511182 511206 . ? . description=trf scaffold_8 . biological_region 511412 511415 0.999 - . logic_name=eponine scaffold_8 . biological_region 511754 511757 0.999 - . logic_name=eponine scaffold_8 . repeat_region 512421 512474 . ? . description=trf scaffold_8 . repeat_region 512441 512513 . ? . description=trf scaffold_8 . biological_region 513231 513235 0.999 + . logic_name=eponine scaffold_8 . biological_region 513272 513279 0.999 - . logic_name=eponine scaffold_8 . biological_region 513279 513280 0.999 + . logic_name=eponine scaffold_8 . biological_region 513355 513357 0.999 + . logic_name=eponine scaffold_8 . biological_region 513398 513399 0.999 + . logic_name=eponine scaffold_8 . biological_region 514774 514774 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 508048 510968 . + . ID=Physo129597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80108;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 508048 510968 . + . ID=Physo129597;Parent=Physo129597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 508048 510889 . + 0 ID=Physo129597;Parent=Physo129597;rank=1 scaffold_8 . exon 508048 510889 . + . ID=Physo129597.1;Parent=Physo129597;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 510958 510968 . + 0 ID=Physo129597;Parent=Physo129597;rank=2 scaffold_8 . exon 510958 510968 . + . ID=Physo129597.2;Parent=Physo129597;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 ensembl protein_coding_gene 511179 514164 . - . ID=Physo129598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80109;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 511179 514164 . - . ID=Physo129598;Parent=Physo129598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 511179 513905 . - 0 ID=Physo129598;Parent=Physo129598;rank=3 scaffold_8 . exon 511179 513905 . - . ID=Physo129598.3;Parent=Physo129598;constitutive=1;rank=3 scaffold_8 . CDS 513983 514088 . - 0 ID=Physo129598;Parent=Physo129598;rank=2 scaffold_8 . exon 513983 514088 . - . ID=Physo129598.2;Parent=Physo129598;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 514154 514164 . - 0 ID=Physo129598;Parent=Physo129598;rank=1 scaffold_8 . exon 514154 514164 . - . ID=Physo129598.1;Parent=Physo129598;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 514467 516995 . + . ID=Physo155807;biotype=protein_coding;external_name=C_scaffold_8000013;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 514467 516995 . + . ID=Physo155807;Parent=Physo155807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 514467 514622 . + 0 ID=Physo155807;Parent=Physo155807;rank=1 scaffold_8 . exon 514467 514622 . + . ID=Physo155807.1;Parent=Physo155807;constitutive=1;rank=1 scaffold_8 . CDS 514719 515319 . + 0 ID=Physo155807;Parent=Physo155807;rank=2 scaffold_8 . exon 514719 515319 . + . ID=Physo155807.2;Parent=Physo155807;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 515403 515558 . + 0 ID=Physo155807;Parent=Physo155807;rank=3 scaffold_8 . exon 515403 515558 . + . ID=Physo155807.3;Parent=Physo155807;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 515633 515992 . + 0 ID=Physo155807;Parent=Physo155807;rank=4 scaffold_8 . exon 515633 515992 . + . ID=Physo155807.4;Parent=Physo155807;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 516044 516376 . + 0 ID=Physo155807;Parent=Physo155807;rank=5 scaffold_8 . exon 516044 516376 . + . ID=Physo155807.5;Parent=Physo155807;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_8 . CDS 516533 516781 . + 0 ID=Physo155807;Parent=Physo155807;rank=6 scaffold_8 . CDS 516862 516995 . + 0 ID=Physo155807;Parent=Physo155807;rank=7 scaffold_8 . repeat_region 518883 518942 . ? . description=dust scaffold_8 . repeat_region 519330 519360 . + . description=LSU-rRNA_Hca scaffold_8 ensembl protein_coding_gene 517660 518629 . - . ID=Physo129600;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80111;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 517660 518629 . - . ID=Physo129600;Parent=Physo129600;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 517660 517770 . - 0 ID=Physo129600;Parent=Physo129600;rank=2 scaffold_8 . exon 517660 517770 . - . ID=Physo129600.2;Parent=Physo129600;constitutive=1;rank=2 scaffold_8 . CDS 517838 518629 . - 0 ID=Physo129600;Parent=Physo129600;rank=1 scaffold_8 . exon 517838 518629 . - . ID=Physo129600.1;Parent=Physo129600;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 520126 520752 . + . ID=Physo129601;biotype=protein_coding;description=PsAvh182 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Q9];external_name=estExt_fgenesh1_pg.C_80112;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 520126 520752 . + . ID=Physo129601;Parent=Physo129601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 520126 520752 . + 0 ID=Physo129601;Parent=Physo129601;rank=1 scaffold_8 . exon 520126 520752 . + . ID=Physo129601.1;Parent=Physo129601;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 525807 527510 . - . ID=Physo129602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80113;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 525807 527510 . - . ID=Physo129602;Parent=Physo129602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 525807 526132 . - 0 ID=Physo129602;Parent=Physo129602;rank=4 scaffold_8 . exon 525807 526132 . - . ID=Physo129602.4;Parent=Physo129602;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 526204 526462 . - 0 ID=Physo129602;Parent=Physo129602;rank=3 scaffold_8 . exon 526204 526462 . - . ID=Physo129602.3;Parent=Physo129602;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 526617 527085 . - 0 ID=Physo129602;Parent=Physo129602;rank=2 scaffold_8 . CDS 527161 527510 . - 0 ID=Physo129602;Parent=Physo129602;rank=1 scaffold_8 . exon 516533 516781 . + . ID=Physo155807.6;Parent=Physo155807;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_8 . exon 516862 516995 . + . ID=Physo155807.7;Parent=Physo155807;constitutive=1;ensembl_phase=1;rank=7 scaffold_8 . biological_region 526846 526849 0.999 + . logic_name=eponine scaffold_8 . repeat_region 531628 531666 . ? . description=trf scaffold_8 . repeat_region 535501 535528 . ? . description=trf scaffold_8 . exon 526617 527085 . - . ID=Physo129602.2;Parent=Physo129602;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . exon 527161 527510 . - . ID=Physo129602.1;Parent=Physo129602;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 528153 529852 . + . ID=Physo129603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80114;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 528153 529852 . + . ID=Physo129603;Parent=Physo129603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 528153 529662 . + 0 ID=Physo129603;Parent=Physo129603;rank=1 scaffold_8 . exon 528153 529662 . + . ID=Physo129603.1;Parent=Physo129603;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 529830 529852 . + 0 ID=Physo129603;Parent=Physo129603;rank=2 scaffold_8 . exon 529830 529852 . + . ID=Physo129603.2;Parent=Physo129603;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . repeat_region 542855 542863 . ? . description=dust scaffold_8 . biological_region 551534 551538 0.999 + . logic_name=eponine scaffold_8 . biological_region 552318 552318 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 548615 558550 . + . ID=Physo155811;biotype=protein_coding;external_name=C_scaffold_8000017;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 548615 558550 . + . ID=Physo155811;Parent=Physo155811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 548615 550115 . + 0 ID=Physo155811;Parent=Physo155811;rank=1 scaffold_8 . exon 548615 550115 . + . ID=Physo155811.1;Parent=Physo155811;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 550577 551636 . + 0 ID=Physo155811;Parent=Physo155811;rank=2 scaffold_8 . exon 550577 551636 . + . ID=Physo155811.2;Parent=Physo155811;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 551661 552319 . + 0 ID=Physo155811;Parent=Physo155811;rank=3 scaffold_8 . exon 551661 552319 . + . ID=Physo155811.3;Parent=Physo155811;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 552347 553622 . + 0 ID=Physo155811;Parent=Physo155811;rank=4 scaffold_8 . exon 552347 553622 . + . ID=Physo155811.4;Parent=Physo155811;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 553659 554622 . + 0 ID=Physo155811;Parent=Physo155811;rank=5 scaffold_8 . exon 553659 554622 . + . ID=Physo155811.5;Parent=Physo155811;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 554696 555191 . + 0 ID=Physo155811;Parent=Physo155811;rank=6 scaffold_8 . exon 554696 555191 . + . ID=Physo155811.6;Parent=Physo155811;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_8 . CDS 555216 555815 . + 0 ID=Physo155811;Parent=Physo155811;rank=7 scaffold_8 . exon 555216 555815 . + . ID=Physo155811.7;Parent=Physo155811;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_8 . CDS 555897 556064 . + 0 ID=Physo155811;Parent=Physo155811;rank=8 scaffold_8 . exon 555897 556064 . + . ID=Physo155811.8;Parent=Physo155811;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_8 . CDS 556155 556406 . + 0 ID=Physo155811;Parent=Physo155811;rank=9 scaffold_8 . CDS 556464 556754 . + 0 ID=Physo155811;Parent=Physo155811;rank=10 scaffold_8 . CDS 556824 557002 . + 0 ID=Physo155811;Parent=Physo155811;rank=11 scaffold_8 . CDS 557297 558550 . + 0 ID=Physo155811;Parent=Physo155811;rank=12 scaffold_8 . repeat_region 561516 561529 . ? . description=dust scaffold_8 . repeat_region 564522 564546 . ? . description=trf scaffold_8 ensembl protein_coding_gene 560341 561426 . - . ID=Physo129606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80117;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 560341 561426 . - . ID=Physo129606;Parent=Physo129606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 560341 561426 . - 0 ID=Physo129606;Parent=Physo129606;rank=1 scaffold_8 . exon 560341 561426 . - . ID=Physo129606.1;Parent=Physo129606;constitutive=1;rank=1 scaffold_8 . exon 556155 556406 . + . ID=Physo155811.9;Parent=Physo155811;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_8 . exon 556464 556754 . + . ID=Physo155811.10;Parent=Physo155811;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_8 . exon 556824 557002 . + . ID=Physo155811.11;Parent=Physo155811;constitutive=1;ensembl_phase=1;rank=11 scaffold_8 . exon 557297 558550 . + . ID=Physo155811.12;Parent=Physo155811;constitutive=1;rank=12 scaffold_8 ensembl protein_coding_gene 558846 560048 . + . ID=Physo155812;biotype=protein_coding;external_name=C_scaffold_8000018;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 558846 560048 . + . ID=Physo155812;Parent=Physo155812;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 558846 560048 . + 0 ID=Physo155812;Parent=Physo155812;rank=1 scaffold_8 . exon 558846 560048 . + . ID=Physo155812.1;Parent=Physo155812;constitutive=1;rank=1 scaffold_8 . biological_region 566523 566527 0.999 + . logic_name=eponine scaffold_8 . biological_region 566586 566590 0.999 + . logic_name=eponine scaffold_8 . biological_region 573323 573326 0.999 - . logic_name=eponine scaffold_8 . biological_region 575184 575185 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 566256 568015 . - . ID=Physo129607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80118;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 566256 568015 . - . ID=Physo129607;Parent=Physo129607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 566256 566670 . - 0 ID=Physo129607;Parent=Physo129607;rank=2 scaffold_8 . exon 566256 566670 . - . ID=Physo129607.2;Parent=Physo129607;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 567099 568015 . - 0 ID=Physo129607;Parent=Physo129607;rank=1 scaffold_8 . exon 567099 568015 . - . ID=Physo129607.1;Parent=Physo129607;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 573201 579025 . + . ID=Physo129608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80119;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 573201 579025 . + . ID=Physo129608;Parent=Physo129608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 573201 575937 . + 0 ID=Physo129608;Parent=Physo129608;rank=1 scaffold_8 . exon 573201 575937 . + . ID=Physo129608.1;Parent=Physo129608;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 575973 579025 . + 0 ID=Physo129608;Parent=Physo129608;rank=2 scaffold_8 . repeat_region 583839 583849 . ? . description=dust scaffold_8 . exon 575973 579025 . + . ID=Physo129608.2;Parent=Physo129608;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 ensembl protein_coding_gene 582951 584982 . - . ID=Physo129609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80120;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 582951 584982 . - . ID=Physo129609;Parent=Physo129609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 582951 583849 . - 0 ID=Physo129609;Parent=Physo129609;rank=2 scaffold_8 . exon 582951 583849 . - . ID=Physo129609.2;Parent=Physo129609;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 584145 584982 . - 0 ID=Physo129609;Parent=Physo129609;rank=1 scaffold_8 . exon 584145 584982 . - . ID=Physo129609.1;Parent=Physo129609;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . repeat_region 587666 587695 . ? . description=trf scaffold_8 . biological_region 589877 589882 0.999 + . logic_name=eponine scaffold_8 . biological_region 593187 593190 0.999 - . logic_name=eponine scaffold_8 . biological_region 593221 593224 0.999 + . logic_name=eponine scaffold_8 . biological_region 593225 593230 0.999 - . logic_name=eponine scaffold_8 . biological_region 593241 593249 0.999 + . logic_name=eponine scaffold_8 . biological_region 593245 593248 0.999 - . logic_name=eponine scaffold_8 . biological_region 593338 593339 0.999 + . logic_name=eponine scaffold_8 . biological_region 593489 593493 0.999 + . logic_name=eponine scaffold_8 . biological_region 593557 593565 0.999 + . logic_name=eponine scaffold_8 . biological_region 593587 593594 0.999 - . logic_name=eponine scaffold_8 . biological_region 593623 593628 0.999 + . logic_name=eponine scaffold_8 . biological_region 593625 593631 0.999 - . logic_name=eponine scaffold_8 . biological_region 593662 593664 0.999 - . logic_name=eponine scaffold_8 . biological_region 593680 593685 0.999 - . logic_name=eponine scaffold_8 . biological_region 593689 593691 0.999 - . logic_name=eponine scaffold_8 . biological_region 593705 593709 0.999 - . logic_name=eponine scaffold_8 . biological_region 593745 593749 0.999 - . logic_name=eponine scaffold_8 . biological_region 593760 593764 0.999 + . logic_name=eponine scaffold_8 . biological_region 593805 593806 0.999 - . logic_name=eponine scaffold_8 . biological_region 593833 593834 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 593395 596236 . + . ID=Physo112102;biotype=protein_coding;external_name=estExt_Genewise1.C_80061;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 593395 596236 . + . ID=Physo112102;Parent=Physo112102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 593395 596151 . + 0 ID=Physo112102;Parent=Physo112102;rank=1 scaffold_8 . exon 593395 596236 . + . ID=Physo112102.1;Parent=Physo112102;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 . repeat_region 600290 600303 . ? . description=dust scaffold_8 . repeat_region 602792 602801 . ? . description=dust scaffold_8 ensembl protein_coding_gene 600190 601828 . + . ID=Physo129611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80122;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 600190 601828 . + . ID=Physo129611;Parent=Physo129611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 600190 600264 . + 0 ID=Physo129611;Parent=Physo129611;rank=1 scaffold_8 . exon 600190 600264 . + . ID=Physo129611.1;Parent=Physo129611;constitutive=1;rank=1 scaffold_8 . CDS 600350 601828 . + 0 ID=Physo129611;Parent=Physo129611;rank=2 scaffold_8 . exon 600350 601828 . + . ID=Physo129611.2;Parent=Physo129611;constitutive=1;rank=2 scaffold_8 . biological_region 605996 605998 0.999 + . logic_name=eponine scaffold_8 . biological_region 608886 608893 0.999 + . logic_name=eponine scaffold_8 . biological_region 615386 615387 0.999 - . logic_name=eponine scaffold_8 . biological_region 615425 615426 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 615154 615929 . - . ID=Physo129612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80123;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 615154 615929 . - . ID=Physo129612;Parent=Physo129612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 615154 615576 . - 0 ID=Physo129612;Parent=Physo129612;rank=2 scaffold_8 . exon 615154 615576 . - . ID=Physo129612.2;Parent=Physo129612;constitutive=1;rank=2 scaffold_8 . CDS 615642 615929 . - 0 ID=Physo129612;Parent=Physo129612;rank=1 scaffold_8 . repeat_region 617209 617217 . ? . description=dust scaffold_8 . exon 615642 615929 . - . ID=Physo129612.1;Parent=Physo129612;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 616010 616585 . - . ID=Physo129613;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80124;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 616010 616585 . - . ID=Physo129613;Parent=Physo129613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 616010 616585 . - 0 ID=Physo129613;Parent=Physo129613;rank=1 scaffold_8 . exon 616010 616585 . - . ID=Physo129613.1;Parent=Physo129613;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 617245 619270 . - . ID=Physo129614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80125;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 617245 619270 . - . ID=Physo129614;Parent=Physo129614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 617245 617298 . - 0 ID=Physo129614;Parent=Physo129614;rank=4 scaffold_8 . exon 617245 617298 . - . ID=Physo129614.4;Parent=Physo129614;constitutive=1;rank=4 scaffold_8 . CDS 617377 617893 . - 0 ID=Physo129614;Parent=Physo129614;rank=3 scaffold_8 . exon 617377 617893 . - . ID=Physo129614.3;Parent=Physo129614;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 617916 618774 . - 0 ID=Physo129614;Parent=Physo129614;rank=2 scaffold_8 . exon 617916 618774 . - . ID=Physo129614.2;Parent=Physo129614;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 619042 619270 . - 0 ID=Physo129614;Parent=Physo129614;rank=1 scaffold_8 . exon 619042 619270 . - . ID=Physo129614.1;Parent=Physo129614;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 620995 622697 . - . ID=Physo129615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80126;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 620995 622697 . - . ID=Physo129615;Parent=Physo129615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 620995 622310 . - 0 ID=Physo129615;Parent=Physo129615;rank=2 scaffold_8 . exon 620995 622310 . - . ID=Physo129615.2;Parent=Physo129615;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 622361 622697 . - 0 ID=Physo129615;Parent=Physo129615;rank=1 scaffold_8 . exon 622361 622697 . - . ID=Physo129615.1;Parent=Physo129615;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 623255 625627 . - . ID=Physo129616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80127;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 623255 625627 . - . ID=Physo129616;Parent=Physo129616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 623255 625627 . - . ID=Physo129616.1;Parent=Physo129616;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 . CDS 623393 625627 . - 0 ID=Physo129616;Parent=Physo129616;rank=1 scaffold_8 . biological_region 625532 625534 0.999 + . logic_name=eponine scaffold_8 . biological_region 625556 625557 0.999 + . logic_name=eponine scaffold_8 . biological_region 625574 625576 0.999 - . logic_name=eponine scaffold_8 . repeat_region 625632 625661 . ? . description=trf scaffold_8 . biological_region 627418 627420 0.999 + . logic_name=eponine scaffold_8 . biological_region 627993 627995 0.999 - . logic_name=eponine scaffold_8 . biological_region 627997 628003 0.999 + . logic_name=eponine scaffold_8 . biological_region 628088 628092 0.999 - . logic_name=eponine scaffold_8 . biological_region 628335 628343 0.999 + . logic_name=eponine scaffold_8 . biological_region 628375 628376 0.999 + . logic_name=eponine scaffold_8 . biological_region 628426 628433 0.999 - . logic_name=eponine scaffold_8 . biological_region 631134 631136 0.999 - . logic_name=eponine scaffold_8 . biological_region 631413 631418 0.999 + . logic_name=eponine scaffold_8 . biological_region 631423 631425 0.999 + . logic_name=eponine scaffold_8 . biological_region 631467 631474 0.999 - . logic_name=eponine scaffold_8 . biological_region 631471 631477 0.999 + . logic_name=eponine scaffold_8 . biological_region 632860 632865 0.999 + . logic_name=eponine scaffold_8 . repeat_region 634643 634677 . ? . description=trf scaffold_8 ensembl protein_coding_gene 631380 632129 . + . ID=Physo112127;biotype=protein_coding;external_name=estExt_Genewise1.C_80086;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 631380 632129 . + . ID=Physo112127;Parent=Physo112127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 631380 632129 . + . ID=Physo112127.1;Parent=Physo112127;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 631389 632129 . + 0 ID=Physo112127;Parent=Physo112127;rank=1 scaffold_8 ensembl protein_coding_gene 626304 631239 . - . ID=Physo129617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80128;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 626304 631239 . - . ID=Physo129617;Parent=Physo129617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 626304 626566 . - 0 ID=Physo129617;Parent=Physo129617;rank=9 scaffold_8 . exon 626304 626566 . - . ID=Physo129617.9;Parent=Physo129617;constitutive=1;ensembl_phase=1;rank=9 scaffold_8 . CDS 626657 628439 . - 0 ID=Physo129617;Parent=Physo129617;rank=8 scaffold_8 . exon 626657 628439 . - . ID=Physo129617.8;Parent=Physo129617;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_8 . CDS 628644 628681 . - 0 ID=Physo129617;Parent=Physo129617;rank=7 scaffold_8 . exon 628644 628681 . - . ID=Physo129617.7;Parent=Physo129617;constitutive=1;ensembl_phase=1;rank=7 scaffold_8 . CDS 628762 629096 . - 0 ID=Physo129617;Parent=Physo129617;rank=6 scaffold_8 . exon 628762 629096 . - . ID=Physo129617.6;Parent=Physo129617;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_8 . CDS 629168 629419 . - 0 ID=Physo129617;Parent=Physo129617;rank=5 scaffold_8 . exon 629168 629419 . - . ID=Physo129617.5;Parent=Physo129617;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_8 . CDS 629906 630601 . - 0 ID=Physo129617;Parent=Physo129617;rank=4 scaffold_8 . exon 629906 630601 . - . ID=Physo129617.4;Parent=Physo129617;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_8 . CDS 630675 630754 . - 0 ID=Physo129617;Parent=Physo129617;rank=3 scaffold_8 . exon 630675 630754 . - . ID=Physo129617.3;Parent=Physo129617;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_8 . CDS 630837 630860 . - 0 ID=Physo129617;Parent=Physo129617;rank=2 scaffold_8 . exon 630837 630860 . - . ID=Physo129617.2;Parent=Physo129617;constitutive=1;rank=2 scaffold_8 . CDS 630940 631239 . - 0 ID=Physo129617;Parent=Physo129617;rank=1 scaffold_8 . exon 630940 631239 . - . ID=Physo129617.1;Parent=Physo129617;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 632768 634578 . - . ID=Physo129619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80130;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 632768 634578 . - . ID=Physo129619;Parent=Physo129619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 632768 633319 . - 0 ID=Physo129619;Parent=Physo129619;rank=4 scaffold_8 . exon 632768 633319 . - . ID=Physo129619.4;Parent=Physo129619;constitutive=1;rank=4 scaffold_8 . CDS 633349 633580 . - 0 ID=Physo129619;Parent=Physo129619;rank=3 scaffold_8 . exon 633349 633580 . - . ID=Physo129619.3;Parent=Physo129619;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 633663 634161 . - 0 ID=Physo129619;Parent=Physo129619;rank=2 scaffold_8 . exon 633663 634161 . - . ID=Physo129619.2;Parent=Physo129619;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 634272 634578 . - 0 ID=Physo129619;Parent=Physo129619;rank=1 scaffold_8 . exon 634272 634578 . - . ID=Physo129619.1;Parent=Physo129619;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 634962 635483 . - . ID=Physo129620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80131;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 634962 635483 . - . ID=Physo129620;Parent=Physo129620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 634962 635483 . - 0 ID=Physo129620;Parent=Physo129620;rank=1 scaffold_8 . exon 634962 635483 . - . ID=Physo129620.1;Parent=Physo129620;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 638238 638866 . + . ID=Physo129621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80132;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 638238 638866 . + . ID=Physo129621;Parent=Physo129621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 638238 638249 . + 0 ID=Physo129621;Parent=Physo129621;rank=1 scaffold_8 . exon 638238 638249 . + . ID=Physo129621.1;Parent=Physo129621;constitutive=1;rank=1 scaffold_8 . CDS 638417 638866 . + 0 ID=Physo129621;Parent=Physo129621;rank=2 scaffold_8 . exon 638417 638866 . + . ID=Physo129621.2;Parent=Physo129621;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 640954 642982 . - . ID=Physo129622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80133;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 640954 642982 . - . ID=Physo129622;Parent=Physo129622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 640954 641080 . - 0 ID=Physo129622;Parent=Physo129622;rank=5 scaffold_8 . exon 640954 641080 . - . ID=Physo129622.5;Parent=Physo129622;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 641537 641864 . - 0 ID=Physo129622;Parent=Physo129622;rank=4 scaffold_8 . exon 641537 641864 . - . ID=Physo129622.4;Parent=Physo129622;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 641958 642026 . - 0 ID=Physo129622;Parent=Physo129622;rank=3 scaffold_8 . exon 641958 642026 . - . ID=Physo129622.3;Parent=Physo129622;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 642078 642713 . - 0 ID=Physo129622;Parent=Physo129622;rank=2 scaffold_8 . exon 642078 642713 . - . ID=Physo129622.2;Parent=Physo129622;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 642946 642982 . - 0 ID=Physo129622;Parent=Physo129622;rank=1 scaffold_8 . exon 642946 642982 . - . ID=Physo129622.1;Parent=Physo129622;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 643369 644474 . + . ID=Physo129623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80134;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 643369 644474 . + . ID=Physo129623;Parent=Physo129623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 643369 643992 . + 0 ID=Physo129623;Parent=Physo129623;rank=1 scaffold_8 . exon 643369 643992 . + . ID=Physo129623.1;Parent=Physo129623;constitutive=1;rank=1 scaffold_8 . CDS 644076 644291 . + 0 ID=Physo129623;Parent=Physo129623;rank=2 scaffold_8 . exon 644076 644291 . + . ID=Physo129623.2;Parent=Physo129623;constitutive=1;rank=2 scaffold_8 . CDS 644370 644474 . + 0 ID=Physo129623;Parent=Physo129623;rank=3 scaffold_8 . exon 644370 644474 . + . ID=Physo129623.3;Parent=Physo129623;constitutive=1;rank=3 scaffold_8 ensembl protein_coding_gene 644597 648523 . - . ID=Physo129624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80135;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 644597 648523 . - . ID=Physo129624;Parent=Physo129624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 644597 648523 . - 0 ID=Physo129624;Parent=Physo129624;rank=1 scaffold_8 . exon 644597 648523 . - . ID=Physo129624.1;Parent=Physo129624;constitutive=1;rank=1 scaffold_8 . biological_region 647561 647562 0.999 - . logic_name=eponine scaffold_8 . biological_region 647599 647600 0.999 + . logic_name=eponine scaffold_8 . biological_region 648061 648062 0.999 - . logic_name=eponine scaffold_8 . repeat_region 648299 648359 . ? . description=dust scaffold_8 . repeat_region 648299 648365 . + . description=(CTG)n scaffold_8 . biological_region 648512 648514 0.999 - . logic_name=eponine scaffold_8 . repeat_region 648669 648679 . ? . description=dust scaffold_8 . biological_region 649441 649441 0.999 + . logic_name=eponine scaffold_8 . biological_region 649661 649665 0.999 + . logic_name=eponine scaffold_8 . repeat_region 650163 650196 . ? . description=trf scaffold_8 . biological_region 651793 651798 0.999 - . logic_name=eponine scaffold_8 . biological_region 652326 652329 0.999 + . logic_name=eponine scaffold_8 . repeat_region 652588 652648 . ? . description=trf scaffold_8 . repeat_region 652588 652648 . ? . description=trf scaffold_8 . repeat_region 652591 652648 . ? . description=dust scaffold_8 . repeat_region 652628 652657 . ? . description=trf scaffold_8 . repeat_region 653670 653702 . ? . description=trf scaffold_8 . repeat_region 653670 653704 . ? . description=dust scaffold_8 ensembl protein_coding_gene 655103 656853 . - . ID=Physo108400;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80010;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 655103 656853 . - . ID=Physo108400;Parent=Physo108400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 655103 656041 . - 0 ID=Physo108400;Parent=Physo108400;rank=3 scaffold_8 . exon 655103 656041 . - . ID=Physo108400.3;Parent=Physo108400;constitutive=1;rank=3 scaffold_8 . CDS 656112 656276 . - 0 ID=Physo108400;Parent=Physo108400;rank=2 scaffold_8 . CDS 656353 656853 . - 0 ID=Physo108400;Parent=Physo108400;rank=1 scaffold_8 ensembl protein_coding_gene 648811 650300 . - . ID=Physo129625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80136;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 648811 650300 . - . ID=Physo129625;Parent=Physo129625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 648811 648899 . - 0 ID=Physo129625;Parent=Physo129625;rank=4 scaffold_8 . exon 648811 648899 . - . ID=Physo129625.4;Parent=Physo129625;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 648985 649761 . - 0 ID=Physo129625;Parent=Physo129625;rank=3 scaffold_8 . exon 648985 649761 . - . ID=Physo129625.3;Parent=Physo129625;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 649839 650004 . - 0 ID=Physo129625;Parent=Physo129625;rank=2 scaffold_8 . exon 649839 650004 . - . ID=Physo129625.2;Parent=Physo129625;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 650077 650286 . - 0 ID=Physo129625;Parent=Physo129625;rank=1 scaffold_8 . exon 650077 650300 . - . ID=Physo129625.1;Parent=Physo129625;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 650522 651281 . + . ID=Physo129626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80137;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 650522 651281 . + . ID=Physo129626;Parent=Physo129626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 650522 650897 . + 0 ID=Physo129626;Parent=Physo129626;rank=1 scaffold_8 . exon 650522 650897 . + . ID=Physo129626.1;Parent=Physo129626;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 650998 651281 . + 0 ID=Physo129626;Parent=Physo129626;rank=2 scaffold_8 . exon 650998 651281 . + . ID=Physo129626.2;Parent=Physo129626;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 ensembl protein_coding_gene 652330 654802 . + . ID=Physo129627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80138;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 652330 654802 . + . ID=Physo129627;Parent=Physo129627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 652330 654552 . + 0 ID=Physo129627;Parent=Physo129627;rank=1 scaffold_8 . exon 652330 654552 . + . ID=Physo129627.1;Parent=Physo129627;constitutive=1;rank=1 scaffold_8 . CDS 654628 654735 . + 0 ID=Physo129627;Parent=Physo129627;rank=2 scaffold_8 . exon 654628 654802 . + . ID=Physo129627.2;Parent=Physo129627;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_8 . exon 656112 656276 . - . ID=Physo108400.2;Parent=Physo108400;constitutive=1;rank=2 scaffold_8 . exon 656353 656853 . - . ID=Physo108400.1;Parent=Physo108400;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 658580 659797 . + . ID=Physo129629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80140;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 658580 659797 . + . ID=Physo129629;Parent=Physo129629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 658580 659797 . + 0 ID=Physo129629;Parent=Physo129629;rank=1 scaffold_8 . exon 658580 659797 . + . ID=Physo129629.1;Parent=Physo129629;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 660112 660705 . - . ID=Physo129630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80141;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 660112 660705 . - . ID=Physo129630;Parent=Physo129630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 660112 660705 . - 0 ID=Physo129630;Parent=Physo129630;rank=1 scaffold_8 . exon 660112 660705 . - . ID=Physo129630.1;Parent=Physo129630;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 661464 664723 . + . ID=Physo129631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80142;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 661464 664723 . + . ID=Physo129631;Parent=Physo129631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 661464 664108 . + . ID=Physo129631.1;Parent=Physo129631;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 661516 664108 . + 0 ID=Physo129631;Parent=Physo129631;rank=1 scaffold_8 . CDS 664180 664661 . + 0 ID=Physo129631;Parent=Physo129631;rank=2 scaffold_8 . exon 664180 664723 . + . ID=Physo129631.2;Parent=Physo129631;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_8 . biological_region 667893 667896 0.999 + . logic_name=eponine scaffold_8 . biological_region 669140 669141 0.999 + . logic_name=eponine scaffold_8 . biological_region 669174 669178 0.999 - . logic_name=eponine scaffold_8 . biological_region 669332 669336 0.999 - . logic_name=eponine scaffold_8 . biological_region 669595 669598 0.999 + . logic_name=eponine scaffold_8 . repeat_region 669630 669665 . ? . description=trf scaffold_8 . repeat_region 669636 669687 . ? . description=dust scaffold_8 . repeat_region 669643 669669 . ? . description=trf scaffold_8 . repeat_region 669922 669929 . ? . description=dust scaffold_8 . biological_region 670276 670276 0.999 - . logic_name=eponine scaffold_8 . biological_region 670353 670358 0.999 + . logic_name=eponine scaffold_8 . biological_region 672451 672452 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 665735 667006 . - . ID=Physo129632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80143;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 665735 667006 . - . ID=Physo129632;Parent=Physo129632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 665735 667006 . - 0 ID=Physo129632;Parent=Physo129632;rank=1 scaffold_8 . exon 665735 667006 . - . ID=Physo129632.1;Parent=Physo129632;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 667142 668056 . - . ID=Physo129633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80144;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 667142 668056 . - . ID=Physo129633;Parent=Physo129633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 667142 668056 . - 0 ID=Physo129633;Parent=Physo129633;rank=1 scaffold_8 . exon 667142 668056 . - . ID=Physo129633.1;Parent=Physo129633;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 668599 671069 . + . ID=Physo129634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80145;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 668599 671069 . + . ID=Physo129634;Parent=Physo129634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 668599 668647 . + 0 ID=Physo129634;Parent=Physo129634;rank=1 scaffold_8 . exon 668599 668647 . + . ID=Physo129634.1;Parent=Physo129634;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 668684 669847 . + 0 ID=Physo129634;Parent=Physo129634;rank=2 scaffold_8 . exon 668684 669847 . + . ID=Physo129634.2;Parent=Physo129634;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 669997 671069 . + 0 ID=Physo129634;Parent=Physo129634;rank=3 scaffold_8 . exon 669997 671069 . + . ID=Physo129634.3;Parent=Physo129634;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 ensembl protein_coding_gene 671144 671821 . - . ID=Physo129635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80146;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 671144 671821 . - . ID=Physo129635;Parent=Physo129635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 671144 671821 . - 0 ID=Physo129635;Parent=Physo129635;rank=1 scaffold_8 . exon 671144 671821 . - . ID=Physo129635.1;Parent=Physo129635;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 671980 686041 . + . ID=Physo129636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80147;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 671980 686041 . + . ID=Physo129636;Parent=Physo129636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 671980 672250 . + 0 ID=Physo129636;Parent=Physo129636;rank=1 scaffold_8 . exon 671980 672250 . + . ID=Physo129636.1;Parent=Physo129636;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 672333 686041 . + 0 ID=Physo129636;Parent=Physo129636;rank=2 scaffold_8 . exon 672333 686041 . + . ID=Physo129636.2;Parent=Physo129636;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . biological_region 685419 685424 0.999 - . logic_name=eponine scaffold_8 . biological_region 686771 686773 0.999 - . logic_name=eponine scaffold_8 . biological_region 688205 688207 0.999 - . logic_name=eponine scaffold_8 . biological_region 688228 688228 0.999 - . logic_name=eponine scaffold_8 . biological_region 688283 688288 0.999 + . logic_name=eponine scaffold_8 . biological_region 689076 689078 0.999 - . logic_name=eponine scaffold_8 . repeat_region 689410 689435 . ? . description=trf scaffold_8 . repeat_region 689410 689452 . ? . description=dust scaffold_8 . repeat_region 689658 689721 . ? . description=dust scaffold_8 . repeat_region 689688 689723 . ? . description=trf scaffold_8 . biological_region 689944 689946 0.999 - . logic_name=eponine scaffold_8 . repeat_region 690494 690553 . ? . description=trf scaffold_8 . biological_region 691497 691500 0.999 - . logic_name=eponine scaffold_8 . biological_region 691702 691706 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 671980 686041 . + . ID=Physo129636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80147;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 671980 686041 . + . ID=Physo129636;Parent=Physo129636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 671980 672250 . + 0 ID=Physo129636;Parent=Physo129636;rank=1 scaffold_8 . CDS 672333 686041 . + 0 ID=Physo129636;Parent=Physo129636;rank=2 scaffold_8 . exon 672333 686041 . + . ID=Physo129636.2;Parent=Physo129636;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 ensembl protein_coding_gene 686350 690383 . + . ID=Physo129637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80148;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 686350 690383 . + . ID=Physo129637;Parent=Physo129637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 686350 686815 . + 0 ID=Physo129637;Parent=Physo129637;rank=1 scaffold_8 . exon 686350 686815 . + . ID=Physo129637.1;Parent=Physo129637;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 687633 688472 . + 0 ID=Physo129637;Parent=Physo129637;rank=2 scaffold_8 . exon 687633 688472 . + . ID=Physo129637.2;Parent=Physo129637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 688520 689301 . + 0 ID=Physo129637;Parent=Physo129637;rank=3 scaffold_8 . exon 688520 689301 . + . ID=Physo129637.3;Parent=Physo129637;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 689644 689952 . + 0 ID=Physo129637;Parent=Physo129637;rank=4 scaffold_8 . exon 689644 690383 . + . ID=Physo129637.4;Parent=Physo129637;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_8 ensembl protein_coding_gene 691709 695834 . + . ID=Physo129638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80149;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 691709 695834 . + . ID=Physo129638;Parent=Physo129638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 691709 692252 . + 0 ID=Physo129638;Parent=Physo129638;rank=1 scaffold_8 . exon 691709 692252 . + . ID=Physo129638.1;Parent=Physo129638;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 692279 692813 . + 0 ID=Physo129638;Parent=Physo129638;rank=2 scaffold_8 . exon 692279 692813 . + . ID=Physo129638.2;Parent=Physo129638;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 692882 693998 . + 0 ID=Physo129638;Parent=Physo129638;rank=3 scaffold_8 . exon 692882 693998 . + . ID=Physo129638.3;Parent=Physo129638;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 694328 695420 . + 0 ID=Physo129638;Parent=Physo129638;rank=4 scaffold_8 . exon 694328 695420 . + . ID=Physo129638.4;Parent=Physo129638;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_8 . CDS 695761 695834 . + 0 ID=Physo129638;Parent=Physo129638;rank=5 scaffold_8 . exon 695761 695834 . + . ID=Physo129638.5;Parent=Physo129638;constitutive=1;ensembl_phase=1;rank=5 scaffold_8 ensembl protein_coding_gene 696085 697661 . - . ID=Physo129639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80150;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 696085 697661 . - . ID=Physo129639;Parent=Physo129639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 696085 696358 . - 0 ID=Physo129639;Parent=Physo129639;rank=3 scaffold_8 . exon 696085 696358 . - . ID=Physo129639.3;Parent=Physo129639;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 696697 697437 . - 0 ID=Physo129639;Parent=Physo129639;rank=2 scaffold_8 . exon 696697 697437 . - . ID=Physo129639.2;Parent=Physo129639;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 697553 697644 . - 0 ID=Physo129639;Parent=Physo129639;rank=1 scaffold_8 . exon 697553 697661 . - . ID=Physo129639.1;Parent=Physo129639;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 698148 698516 . - . ID=Physo129640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80151;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 698148 698516 . - . ID=Physo129640;Parent=Physo129640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 698148 698516 . - 0 ID=Physo129640;Parent=Physo129640;rank=1 scaffold_8 . exon 698148 698516 . - . ID=Physo129640.1;Parent=Physo129640;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 701596 702563 . + . ID=Physo129641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80152;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 701596 702563 . + . ID=Physo129641;Parent=Physo129641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 701596 701766 . + 0 ID=Physo129641;Parent=Physo129641;rank=1 scaffold_8 . exon 701596 701766 . + . ID=Physo129641.1;Parent=Physo129641;constitutive=1;rank=1 scaffold_8 . CDS 701805 702431 . + 0 ID=Physo129641;Parent=Physo129641;rank=2 scaffold_8 . exon 701805 702431 . + . ID=Physo129641.2;Parent=Physo129641;constitutive=1;rank=2 scaffold_8 . CDS 702546 702563 . + 0 ID=Physo129641;Parent=Physo129641;rank=3 scaffold_8 . exon 702546 702563 . + . ID=Physo129641.3;Parent=Physo129641;constitutive=1;rank=3 scaffold_8 . biological_region 707274 707276 0.999 - . logic_name=eponine scaffold_8 . repeat_region 707447 707483 . ? . description=trf scaffold_8 . biological_region 707883 707887 0.999 + . logic_name=eponine scaffold_8 . repeat_region 708286 708317 . ? . description=trf scaffold_8 . repeat_region 709487 709495 . ? . description=dust scaffold_8 . biological_region 711061 711064 0.999 - . logic_name=eponine scaffold_8 . biological_region 713191 713196 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 706032 707305 . + . ID=Physo129642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80153;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 706032 707305 . + . ID=Physo129642;Parent=Physo129642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 706032 706117 . + 0 ID=Physo129642;Parent=Physo129642;rank=1 scaffold_8 . exon 706032 706117 . + . ID=Physo129642.1;Parent=Physo129642;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 706223 706346 . + 0 ID=Physo129642;Parent=Physo129642;rank=2 scaffold_8 . exon 706223 706346 . + . ID=Physo129642.2;Parent=Physo129642;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 706601 707050 . + 0 ID=Physo129642;Parent=Physo129642;rank=3 scaffold_8 . exon 706601 707050 . + . ID=Physo129642.3;Parent=Physo129642;constitutive=1;rank=3 scaffold_8 . CDS 707144 707305 . + 0 ID=Physo129642;Parent=Physo129642;rank=4 scaffold_8 . exon 707144 707305 . + . ID=Physo129642.4;Parent=Physo129642;constitutive=1;rank=4 scaffold_8 ensembl protein_coding_gene 707700 715414 . + . ID=Physo129643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80154;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 707700 715414 . + . ID=Physo129643;Parent=Physo129643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 707700 707749 . + 0 ID=Physo129643;Parent=Physo129643;rank=1 scaffold_8 . exon 707700 707749 . + . ID=Physo129643.1;Parent=Physo129643;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 707829 708108 . + 0 ID=Physo129643;Parent=Physo129643;rank=2 scaffold_8 . exon 707829 708108 . + . ID=Physo129643.2;Parent=Physo129643;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 708196 708271 . + 0 ID=Physo129643;Parent=Physo129643;rank=3 scaffold_8 . exon 708196 708271 . + . ID=Physo129643.3;Parent=Physo129643;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 708358 708422 . + 0 ID=Physo129643;Parent=Physo129643;rank=4 scaffold_8 . exon 708358 708422 . + . ID=Physo129643.4;Parent=Physo129643;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 708490 708548 . + 0 ID=Physo129643;Parent=Physo129643;rank=5 scaffold_8 . exon 708490 708548 . + . ID=Physo129643.5;Parent=Physo129643;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_8 . CDS 709032 709385 . + 0 ID=Physo129643;Parent=Physo129643;rank=6 scaffold_8 . exon 709032 709385 . + . ID=Physo129643.6;Parent=Physo129643;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_8 . CDS 709621 715414 . + 0 ID=Physo129643;Parent=Physo129643;rank=7 scaffold_8 . exon 709621 715414 . + . ID=Physo129643.7;Parent=Physo129643;constitutive=1;ensembl_phase=2;rank=7 scaffold_8 ensembl protein_coding_gene 721286 721895 . - . ID=Physo108401;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80011;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 721286 721895 . - . ID=Physo108401;Parent=Physo108401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 721286 721895 . - . ID=Physo108401.1;Parent=Physo108401;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 721432 721878 . - 0 ID=Physo108401;Parent=Physo108401;rank=1 scaffold_8 ensembl protein_coding_gene 716103 717254 . + . ID=Physo129644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80155;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 716103 717254 . + . ID=Physo129644;Parent=Physo129644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 716103 717254 . + 0 ID=Physo129644;Parent=Physo129644;rank=1 scaffold_8 . exon 716103 717254 . + . ID=Physo129644.1;Parent=Physo129644;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 718457 719314 . - . ID=Physo129645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80156;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 718457 719314 . - . ID=Physo129645;Parent=Physo129645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 718457 719314 . - 0 ID=Physo129645;Parent=Physo129645;rank=1 scaffold_8 . exon 718457 719314 . - . ID=Physo129645.1;Parent=Physo129645;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 719956 721107 . + . ID=Physo129646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80157;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 719956 721107 . + . ID=Physo129646;Parent=Physo129646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 719956 721107 . + . ID=Physo129646.1;Parent=Physo129646;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 720016 721107 . + 0 ID=Physo129646;Parent=Physo129646;rank=1 scaffold_8 ensembl protein_coding_gene 722068 722838 . - . ID=Physo129648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80159;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 722068 722838 . - . ID=Physo129648;Parent=Physo129648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 722068 722079 . - 0 ID=Physo129648;Parent=Physo129648;rank=3 scaffold_8 . exon 722068 722079 . - . ID=Physo129648.3;Parent=Physo129648;constitutive=1;rank=3 scaffold_8 . CDS 722176 722305 . - 0 ID=Physo129648;Parent=Physo129648;rank=2 scaffold_8 . exon 722176 722305 . - . ID=Physo129648.2;Parent=Physo129648;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 722369 722838 . - 0 ID=Physo129648;Parent=Physo129648;rank=1 scaffold_8 . exon 722369 722838 . - . ID=Physo129648.1;Parent=Physo129648;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 723220 738087 . + . ID=Physo129649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80160;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 723220 738087 . + . ID=Physo129649;Parent=Physo129649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 723220 734007 . + 0 ID=Physo129649;Parent=Physo129649;rank=1 scaffold_8 . exon 723220 734007 . + . ID=Physo129649.1;Parent=Physo129649;constitutive=1;rank=1 scaffold_8 . CDS 734059 734367 . + 0 ID=Physo129649;Parent=Physo129649;rank=2 scaffold_8 . CDS 734704 738087 . + 0 ID=Physo129649;Parent=Physo129649;rank=3 scaffold_8 . repeat_region 734465 734659 . ? . description=dust scaffold_8 . exon 734059 734367 . + . ID=Physo129649.2;Parent=Physo129649;constitutive=1;rank=2 scaffold_8 . exon 734704 738087 . + . ID=Physo129649.3;Parent=Physo129649;constitutive=1;rank=3 scaffold_8 . repeat_region 736075 736119 . ? . description=trf scaffold_8 . repeat_region 739269 739298 . ? . description=trf scaffold_8 . biological_region 740604 740606 0.999 + . logic_name=eponine scaffold_8 . biological_region 740625 740625 0.999 - . logic_name=eponine scaffold_8 . biological_region 740658 740664 0.999 - . logic_name=eponine scaffold_8 . biological_region 740876 740878 0.999 - . logic_name=eponine scaffold_8 . biological_region 740915 740920 0.999 + . logic_name=eponine scaffold_8 . biological_region 740947 740955 0.999 - . logic_name=eponine scaffold_8 . repeat_region 741000 741025 . ? . description=trf scaffold_8 . biological_region 741005 741012 0.999 + . logic_name=eponine scaffold_8 . biological_region 741066 741069 0.999 - . logic_name=eponine scaffold_8 . biological_region 741070 741078 0.999 + . logic_name=eponine scaffold_8 . biological_region 741086 741096 0.999 + . logic_name=eponine scaffold_8 . biological_region 741111 741114 0.999 - . logic_name=eponine scaffold_8 . biological_region 741119 741125 0.999 + . logic_name=eponine scaffold_8 . biological_region 741131 741138 0.999 - . logic_name=eponine scaffold_8 . biological_region 741142 741143 0.999 + . logic_name=eponine scaffold_8 . biological_region 741153 741166 0.999 - . logic_name=eponine scaffold_8 . repeat_region 741215 741261 . ? . description=trf scaffold_8 . biological_region 741240 741242 0.999 + . logic_name=eponine scaffold_8 . biological_region 741285 741287 0.999 + . logic_name=eponine scaffold_8 . biological_region 742868 742872 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 723220 738087 . + . ID=Physo129649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80160;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 723220 738087 . + . ID=Physo129649;Parent=Physo129649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 723220 734007 . + 0 ID=Physo129649;Parent=Physo129649;rank=1 scaffold_8 . CDS 734059 734367 . + 0 ID=Physo129649;Parent=Physo129649;rank=2 scaffold_8 . CDS 734704 738087 . + 0 ID=Physo129649;Parent=Physo129649;rank=3 scaffold_8 ensembl protein_coding_gene 739181 741337 . - . ID=Physo129650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80161;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 739181 741337 . - . ID=Physo129650;Parent=Physo129650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 739181 741337 . - 0 ID=Physo129650;Parent=Physo129650;rank=1 scaffold_8 . exon 739181 741337 . - . ID=Physo129650.1;Parent=Physo129650;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 745088 746765 . + . ID=Physo129651;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80162;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 745088 746765 . + . ID=Physo129651;Parent=Physo129651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 745088 746479 . + 0 ID=Physo129651;Parent=Physo129651;rank=1 scaffold_8 . exon 745088 746765 . + . ID=Physo129651.1;Parent=Physo129651;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 749123 750214 . + . ID=Physo129652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80163;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 749123 750214 . + . ID=Physo129652;Parent=Physo129652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 749123 750214 . + 0 ID=Physo129652;Parent=Physo129652;rank=1 scaffold_8 . exon 749123 750214 . + . ID=Physo129652.1;Parent=Physo129652;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 750413 751480 . - . ID=Physo129653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80164;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 750413 751480 . - . ID=Physo129653;Parent=Physo129653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 750413 751480 . - 0 ID=Physo129653;Parent=Physo129653;rank=1 scaffold_8 . exon 750413 751480 . - . ID=Physo129653.1;Parent=Physo129653;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 751974 753130 . - . ID=Physo129654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80165;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 751974 753130 . - . ID=Physo129654;Parent=Physo129654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 751974 752703 . - 0 ID=Physo129654;Parent=Physo129654;rank=2 scaffold_8 . exon 751974 752703 . - . ID=Physo129654.2;Parent=Physo129654;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 752736 753130 . - 0 ID=Physo129654;Parent=Physo129654;rank=1 scaffold_8 . exon 752736 753130 . - . ID=Physo129654.1;Parent=Physo129654;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . repeat_region 754623 754636 . ? . description=dust scaffold_8 . biological_region 755056 755056 0.999 + . logic_name=eponine scaffold_8 . biological_region 756268 756269 0.999 + . logic_name=eponine scaffold_8 . biological_region 756396 756396 0.999 + . logic_name=eponine scaffold_8 . biological_region 756403 756404 0.999 + . logic_name=eponine scaffold_8 . repeat_region 756477 756510 . ? . description=trf scaffold_8 . biological_region 757669 757672 0.999 + . logic_name=eponine scaffold_8 . biological_region 758047 758049 0.999 + . logic_name=eponine scaffold_8 . repeat_region 758173 758200 . ? . description=trf scaffold_8 . biological_region 758211 758211 0.999 - . logic_name=eponine scaffold_8 . biological_region 758263 758269 0.999 + . logic_name=eponine scaffold_8 . biological_region 759385 759392 0.999 + . logic_name=eponine scaffold_8 . biological_region 761680 761683 0.999 + . logic_name=eponine scaffold_8 . biological_region 761810 761814 0.999 + . logic_name=eponine scaffold_8 . biological_region 761966 761968 0.999 + . logic_name=eponine scaffold_8 . biological_region 761991 761992 0.999 - . logic_name=eponine scaffold_8 . biological_region 762043 762049 0.999 + . logic_name=eponine scaffold_8 . biological_region 762063 762069 0.999 - . logic_name=eponine scaffold_8 . biological_region 762117 762125 0.999 + . logic_name=eponine scaffold_8 . biological_region 762139 762148 0.999 + . logic_name=eponine scaffold_8 . biological_region 762191 762192 0.999 + . logic_name=eponine scaffold_8 . biological_region 762205 762205 0.999 + . logic_name=eponine scaffold_8 . biological_region 762251 762254 0.999 + . logic_name=eponine scaffold_8 . biological_region 762389 762390 0.999 - . logic_name=eponine scaffold_8 . biological_region 762400 762401 0.999 + . logic_name=eponine scaffold_8 . biological_region 762417 762421 0.999 + . logic_name=eponine scaffold_8 . biological_region 762464 762471 0.999 + . logic_name=eponine scaffold_8 . biological_region 762523 762528 0.999 + . logic_name=eponine scaffold_8 . biological_region 762611 762614 0.999 - . logic_name=eponine scaffold_8 . biological_region 762640 762645 0.999 - . logic_name=eponine scaffold_8 . biological_region 762937 762940 0.999 + . logic_name=eponine scaffold_8 . repeat_region 763879 763905 . ? . description=trf scaffold_8 ensembl protein_coding_gene 760035 760840 . + . ID=Physo112184;biotype=protein_coding;external_name=estExt_Genewise1.C_80143;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 760035 760840 . + . ID=Physo112184;Parent=Physo112184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 760035 760840 . + . ID=Physo112184.1;Parent=Physo112184;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 760047 760538 . + 0 ID=Physo112184;Parent=Physo112184;rank=1 scaffold_8 ensembl protein_coding_gene 761135 761491 . + . ID=Physo112187;biotype=protein_coding;external_name=estExt_Genewise1.C_80146;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 761135 761491 . + . ID=Physo112187;Parent=Physo112187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 761135 761491 . + . ID=Physo112187.1;Parent=Physo112187;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 761183 761491 . + 0 ID=Physo112187;Parent=Physo112187;rank=1 scaffold_8 ensembl protein_coding_gene 764884 768652 . + . ID=Physo129656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80167;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 764884 768652 . + . ID=Physo129656;Parent=Physo129656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 764884 765850 . + 0 ID=Physo129656;Parent=Physo129656;rank=1 scaffold_8 . exon 764884 765850 . + . ID=Physo129656.1;Parent=Physo129656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 765982 766835 . + 0 ID=Physo129656;Parent=Physo129656;rank=2 scaffold_8 . exon 765982 766835 . + . ID=Physo129656.2;Parent=Physo129656;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 767027 768407 . + 0 ID=Physo129656;Parent=Physo129656;rank=3 scaffold_8 . exon 767027 768407 . + . ID=Physo129656.3;Parent=Physo129656;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 768459 768652 . + 0 ID=Physo129656;Parent=Physo129656;rank=4 scaffold_8 . exon 768459 768652 . + . ID=Physo129656.4;Parent=Physo129656;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 ensembl protein_coding_gene 771524 772099 . + . ID=Physo129657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80168;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 771524 772099 . + . ID=Physo129657;Parent=Physo129657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 771524 772099 . + 0 ID=Physo129657;Parent=Physo129657;rank=1 scaffold_8 . exon 771524 772099 . + . ID=Physo129657.1;Parent=Physo129657;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 774017 775619 . + . ID=Physo129658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80169;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 774017 775619 . + . ID=Physo129658;Parent=Physo129658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 774017 774027 . + 0 ID=Physo129658;Parent=Physo129658;rank=1 scaffold_8 . exon 774017 774027 . + . ID=Physo129658.1;Parent=Physo129658;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 774134 774385 . + 0 ID=Physo129658;Parent=Physo129658;rank=2 scaffold_8 . exon 774134 774385 . + . ID=Physo129658.2;Parent=Physo129658;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 774517 774820 . + 0 ID=Physo129658;Parent=Physo129658;rank=3 scaffold_8 . CDS 774953 775281 . + 0 ID=Physo129658;Parent=Physo129658;rank=4 scaffold_8 . CDS 775361 775619 . + 0 ID=Physo129658;Parent=Physo129658;rank=5 scaffold_8 . repeat_region 778722 778730 . ? . description=dust scaffold_8 . exon 774517 774820 . + . ID=Physo129658.3;Parent=Physo129658;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . exon 774953 775281 . + . ID=Physo129658.4;Parent=Physo129658;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . exon 775361 775619 . + . ID=Physo129658.5;Parent=Physo129658;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 ensembl protein_coding_gene 776858 777994 . + . ID=Physo129659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80170;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 776858 777994 . + . ID=Physo129659;Parent=Physo129659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 776858 777994 . + 0 ID=Physo129659;Parent=Physo129659;rank=1 scaffold_8 . exon 776858 777994 . + . ID=Physo129659.1;Parent=Physo129659;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 779326 780270 . + . ID=Physo129660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80171;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 779326 780270 . + . ID=Physo129660;Parent=Physo129660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 779326 779379 . + 0 ID=Physo129660;Parent=Physo129660;rank=1 scaffold_8 . exon 779326 779379 . + . ID=Physo129660.1;Parent=Physo129660;constitutive=1;rank=1 scaffold_8 . CDS 779641 780270 . + 0 ID=Physo129660;Parent=Physo129660;rank=2 scaffold_8 . exon 779641 780270 . + . ID=Physo129660.2;Parent=Physo129660;constitutive=1;rank=2 scaffold_8 . repeat_region 785035 785077 . ? . description=trf scaffold_8 . repeat_region 786677 786782 . ? . description=trf scaffold_8 . repeat_region 786748 786790 . ? . description=trf scaffold_8 . repeat_region 790930 790974 . ? . description=trf scaffold_8 . biological_region 793055 793059 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 784734 785318 . + . ID=Physo129661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80172;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 784734 785318 . + . ID=Physo129661;Parent=Physo129661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 784734 784868 . + . ID=Physo129661.1;Parent=Physo129661;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_8 . CDS 784819 784868 . + 0 ID=Physo129661;Parent=Physo129661;rank=1 scaffold_8 . CDS 784917 785283 . + 0 ID=Physo129661;Parent=Physo129661;rank=2 scaffold_8 . exon 784917 785283 . + . ID=Physo129661.2;Parent=Physo129661;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 785304 785318 . + 0 ID=Physo129661;Parent=Physo129661;rank=3 scaffold_8 . exon 785304 785318 . + . ID=Physo129661.3;Parent=Physo129661;constitutive=1;rank=3 scaffold_8 ensembl protein_coding_gene 786394 787091 . - . ID=Physo129662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80173;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 786394 787091 . - . ID=Physo129662;Parent=Physo129662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 786394 786399 . - 0 ID=Physo129662;Parent=Physo129662;rank=3 scaffold_8 . exon 786394 786399 . - . ID=Physo129662.3;Parent=Physo129662;constitutive=1;rank=3 scaffold_8 . CDS 786542 786908 . - 0 ID=Physo129662;Parent=Physo129662;rank=2 scaffold_8 . exon 786542 786908 . - . ID=Physo129662.2;Parent=Physo129662;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 786957 787006 . - 0 ID=Physo129662;Parent=Physo129662;rank=1 scaffold_8 . exon 786957 787091 . - . ID=Physo129662.1;Parent=Physo129662;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 789436 790818 . + . ID=Physo129663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80174;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 789436 790818 . + . ID=Physo129663;Parent=Physo129663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 789436 790698 . + 0 ID=Physo129663;Parent=Physo129663;rank=1 scaffold_8 . exon 789436 790818 . + . ID=Physo129663.1;Parent=Physo129663;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 791002 794070 . - . ID=Physo129664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80175;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 791002 794070 . - . ID=Physo129664;Parent=Physo129664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 791002 791575 . - 0 ID=Physo129664;Parent=Physo129664;rank=5 scaffold_8 . exon 791002 791575 . - . ID=Physo129664.5;Parent=Physo129664;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 791675 792753 . - 0 ID=Physo129664;Parent=Physo129664;rank=4 scaffold_8 . exon 791675 792753 . - . ID=Physo129664.4;Parent=Physo129664;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . CDS 792892 793215 . - 0 ID=Physo129664;Parent=Physo129664;rank=3 scaffold_8 . exon 792892 793215 . - . ID=Physo129664.3;Parent=Physo129664;constitutive=1;rank=3 scaffold_8 . CDS 793355 793486 . - 0 ID=Physo129664;Parent=Physo129664;rank=2 scaffold_8 . exon 793355 793486 . - . ID=Physo129664.2;Parent=Physo129664;constitutive=1;rank=2 scaffold_8 . CDS 793558 794070 . - 0 ID=Physo129664;Parent=Physo129664;rank=1 scaffold_8 . exon 793558 794070 . - . ID=Physo129664.1;Parent=Physo129664;constitutive=1;rank=1 scaffold_8 . repeat_region 798046 798059 . ? . description=dust scaffold_8 . repeat_region 798076 798089 . ? . description=dust scaffold_8 . repeat_region 803900 803958 . ? . description=dust scaffold_8 ensembl protein_coding_gene 797689 802760 . + . ID=Physo155815;biotype=protein_coding;external_name=C_scaffold_8000021;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 797689 802760 . + . ID=Physo155815;Parent=Physo155815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 797689 797854 . + . ID=Physo155815.1;Parent=Physo155815;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_8 . CDS 797691 797854 . + 0 ID=Physo155815;Parent=Physo155815;rank=1 scaffold_8 . CDS 798567 799643 . + 0 ID=Physo155815;Parent=Physo155815;rank=2 scaffold_8 . exon 798567 799643 . + . ID=Physo155815.2;Parent=Physo155815;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 799976 800410 . + 0 ID=Physo155815;Parent=Physo155815;rank=3 scaffold_8 . exon 799976 800410 . + . ID=Physo155815.3;Parent=Physo155815;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_8 . CDS 800570 801262 . + 0 ID=Physo155815;Parent=Physo155815;rank=4 scaffold_8 . exon 800570 801262 . + . ID=Physo155815.4;Parent=Physo155815;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_8 . CDS 801329 801923 . + 0 ID=Physo155815;Parent=Physo155815;rank=5 scaffold_8 . exon 801329 801923 . + . ID=Physo155815.5;Parent=Physo155815;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 802053 802760 . + 0 ID=Physo155815;Parent=Physo155815;rank=6 scaffold_8 . exon 802053 802760 . + . ID=Physo155815.6;Parent=Physo155815;constitutive=1;rank=6 scaffold_8 ensembl protein_coding_gene 803022 803966 . - . ID=Physo155816;biotype=protein_coding;external_name=C_scaffold_8000022;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 803022 803966 . - . ID=Physo155816;Parent=Physo155816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 803022 803699 . - 0 ID=Physo155816;Parent=Physo155816;rank=2 scaffold_8 . exon 803022 803699 . - . ID=Physo155816.2;Parent=Physo155816;constitutive=1;rank=2 scaffold_8 . CDS 803739 803966 . - 0 ID=Physo155816;Parent=Physo155816;rank=1 scaffold_8 . exon 803739 803966 . - . ID=Physo155816.1;Parent=Physo155816;constitutive=1;rank=1 scaffold_8 . biological_region 805045 805049 0.999 - . logic_name=eponine scaffold_8 . biological_region 805722 805722 0.999 + . logic_name=eponine scaffold_8 . biological_region 807177 807180 0.999 + . logic_name=eponine scaffold_8 . repeat_region 810293 810312 . ? . description=trf scaffold_8 . biological_region 810821 810825 0.999 + . logic_name=eponine scaffold_8 . biological_region 811265 811266 0.999 + . logic_name=eponine scaffold_8 . repeat_region 813900 813925 . ? . description=trf scaffold_8 ensembl protein_coding_gene 809218 809652 . + . ID=Physo129669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80180;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 809218 809652 . + . ID=Physo129669;Parent=Physo129669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 809218 809652 . + 0 ID=Physo129669;Parent=Physo129669;rank=1 scaffold_8 . exon 809218 809652 . + . ID=Physo129669.1;Parent=Physo129669;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 810750 811625 . + . ID=Physo129670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80181;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 810750 811625 . + . ID=Physo129670;Parent=Physo129670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 810750 811625 . + 0 ID=Physo129670;Parent=Physo129670;rank=1 scaffold_8 . exon 810750 811625 . + . ID=Physo129670.1;Parent=Physo129670;constitutive=1;rank=1 scaffold_8 . repeat_region 815368 815386 . ? . description=dust scaffold_8 . repeat_region 817288 817300 . ? . description=dust scaffold_8 ensembl protein_coding_gene 822014 822828 . + . ID=Physo129671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80182;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 822014 822828 . + . ID=Physo129671;Parent=Physo129671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 822014 822828 . + . ID=Physo129671.1;Parent=Physo129671;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 822064 822828 . + 0 ID=Physo129671;Parent=Physo129671;rank=1 scaffold_8 . repeat_region 825017 825036 . ? . description=trf scaffold_8 . repeat_region 826738 826766 . ? . description=trf scaffold_8 . biological_region 828588 828591 0.999 + . logic_name=eponine scaffold_8 . biological_region 829246 829250 0.999 - . logic_name=eponine scaffold_8 . biological_region 831915 831920 0.999 - . logic_name=eponine scaffold_8 . biological_region 831931 831939 0.999 - . logic_name=eponine scaffold_8 . biological_region 832448 832449 0.999 + . logic_name=eponine scaffold_8 . biological_region 832926 832930 0.999 + . logic_name=eponine scaffold_8 . repeat_region 833068 833091 . ? . description=trf scaffold_8 ensembl protein_coding_gene 831544 833103 . - . ID=Physo108402;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80012;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 831544 833103 . - . ID=Physo108402;Parent=Physo108402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 831544 832715 . - . ID=Physo108402.2;Parent=Physo108402;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_8 . CDS 831711 832715 . - 0 ID=Physo108402;Parent=Physo108402;rank=2 scaffold_8 . CDS 832789 833067 . - 0 ID=Physo108402;Parent=Physo108402;rank=1 scaffold_8 . exon 832789 833103 . - . ID=Physo108402.1;Parent=Physo108402;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 828445 829367 . - . ID=Physo129672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80183;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 828445 829367 . - . ID=Physo129672;Parent=Physo129672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 828445 828558 . - 0 ID=Physo129672;Parent=Physo129672;rank=2 scaffold_8 . exon 828445 828558 . - . ID=Physo129672.2;Parent=Physo129672;constitutive=1;rank=2 scaffold_8 . CDS 828586 829317 . - 0 ID=Physo129672;Parent=Physo129672;rank=1 scaffold_8 . exon 828586 829367 . - . ID=Physo129672.1;Parent=Physo129672;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 . repeat_region 837793 837826 . ? . description=dust scaffold_8 . repeat_region 837926 837933 . ? . description=dust scaffold_8 . repeat_region 839135 839144 . ? . description=dust scaffold_8 ensembl protein_coding_gene 834634 837504 . + . ID=Physo129674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80185;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 834634 837504 . + . ID=Physo129674;Parent=Physo129674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 834634 837116 . + 0 ID=Physo129674;Parent=Physo129674;rank=1 scaffold_8 . exon 834634 837116 . + . ID=Physo129674.1;Parent=Physo129674;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 837195 837504 . + 0 ID=Physo129674;Parent=Physo129674;rank=2 scaffold_8 . exon 837195 837504 . + . ID=Physo129674.2;Parent=Physo129674;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 ensembl protein_coding_gene 838065 838931 . - . ID=Physo129675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80186;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 838065 838931 . - . ID=Physo129675;Parent=Physo129675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 838065 838931 . - 0 ID=Physo129675;Parent=Physo129675;rank=1 scaffold_8 . exon 838065 838931 . - . ID=Physo129675.1;Parent=Physo129675;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 840454 846792 . - . ID=Physo129677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80188;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 840454 846792 . - . ID=Physo129677;Parent=Physo129677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 840454 843021 . - 0 ID=Physo129677;Parent=Physo129677;rank=4 scaffold_8 . exon 840454 843021 . - . ID=Physo129677.4;Parent=Physo129677;constitutive=1;rank=4 scaffold_8 . CDS 843522 845712 . - 0 ID=Physo129677;Parent=Physo129677;rank=3 scaffold_8 . exon 843522 845712 . - . ID=Physo129677.3;Parent=Physo129677;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 845796 846241 . - 0 ID=Physo129677;Parent=Physo129677;rank=2 scaffold_8 . CDS 846298 846792 . - 0 ID=Physo129677;Parent=Physo129677;rank=1 scaffold_8 ensembl protein_coding_gene 839829 840317 . + . ID=Physo155817;biotype=protein_coding;external_name=C_scaffold_8000023;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 839829 840317 . + . ID=Physo155817;Parent=Physo155817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 839829 839987 . + 0 ID=Physo155817;Parent=Physo155817;rank=1 scaffold_8 . exon 839829 839987 . + . ID=Physo155817.1;Parent=Physo155817;constitutive=1;rank=1 scaffold_8 . CDS 840057 840317 . + 0 ID=Physo155817;Parent=Physo155817;rank=2 scaffold_8 . exon 840057 840317 . + . ID=Physo155817.2;Parent=Physo155817;constitutive=1;rank=2 scaffold_8 . biological_region 848481 848485 0.999 - . logic_name=eponine scaffold_8 . repeat_region 852585 852610 . ? . description=trf scaffold_8 . biological_region 852940 852944 0.999 + . logic_name=eponine scaffold_8 . biological_region 853712 853716 0.999 - . logic_name=eponine scaffold_8 . exon 845796 846241 . - . ID=Physo129677.2;Parent=Physo129677;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . exon 846298 846792 . - . ID=Physo129677.1;Parent=Physo129677;constitutive=1;rank=1 scaffold_8 . repeat_region 855783 855846 . ? . description=dust scaffold_8 . repeat_region 863199 863248 . ? . description=dust scaffold_8 ensembl protein_coding_gene 855580 856488 . + . ID=Physo108403;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80013;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 855580 856488 . + . ID=Physo108403;Parent=Physo108403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 855580 856180 . + 0 ID=Physo108403;Parent=Physo108403;rank=1 scaffold_8 . exon 855580 856180 . + . ID=Physo108403.1;Parent=Physo108403;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 856256 856488 . + 0 ID=Physo108403;Parent=Physo108403;rank=2 scaffold_8 . exon 856256 856488 . + . ID=Physo108403.2;Parent=Physo108403;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 ensembl protein_coding_gene 856773 858187 . + . ID=Physo129679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80190;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 856773 858187 . + . ID=Physo129679;Parent=Physo129679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 856773 857801 . + 0 ID=Physo129679;Parent=Physo129679;rank=1 scaffold_8 . exon 856773 857801 . + . ID=Physo129679.1;Parent=Physo129679;constitutive=1;rank=1 scaffold_8 . CDS 857876 858187 . + 0 ID=Physo129679;Parent=Physo129679;rank=2 scaffold_8 . exon 857876 858187 . + . ID=Physo129679.2;Parent=Physo129679;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 858408 862644 . + . ID=Physo129680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80191;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 858408 862644 . + . ID=Physo129680;Parent=Physo129680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 858408 858524 . + 0 ID=Physo129680;Parent=Physo129680;rank=1 scaffold_8 . exon 858408 858524 . + . ID=Physo129680.1;Parent=Physo129680;constitutive=1;rank=1 scaffold_8 . CDS 858586 858633 . + 0 ID=Physo129680;Parent=Physo129680;rank=2 scaffold_8 . exon 858586 858633 . + . ID=Physo129680.2;Parent=Physo129680;constitutive=1;rank=2 scaffold_8 . CDS 858866 859648 . + 0 ID=Physo129680;Parent=Physo129680;rank=3 scaffold_8 . exon 858866 859648 . + . ID=Physo129680.3;Parent=Physo129680;constitutive=1;rank=3 scaffold_8 . CDS 859797 859916 . + 0 ID=Physo129680;Parent=Physo129680;rank=4 scaffold_8 . exon 859797 859916 . + . ID=Physo129680.4;Parent=Physo129680;constitutive=1;rank=4 scaffold_8 . CDS 859993 860200 . + 0 ID=Physo129680;Parent=Physo129680;rank=5 scaffold_8 . exon 859993 860200 . + . ID=Physo129680.5;Parent=Physo129680;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_8 . CDS 860333 861014 . + 0 ID=Physo129680;Parent=Physo129680;rank=6 scaffold_8 . exon 860333 861014 . + . ID=Physo129680.6;Parent=Physo129680;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_8 . CDS 861460 861541 . + 0 ID=Physo129680;Parent=Physo129680;rank=7 scaffold_8 . exon 861460 861541 . + . ID=Physo129680.7;Parent=Physo129680;constitutive=1;ensembl_phase=2;rank=7 scaffold_8 . CDS 861623 861829 . + 0 ID=Physo129680;Parent=Physo129680;rank=8 scaffold_8 . exon 861623 861829 . + . ID=Physo129680.8;Parent=Physo129680;constitutive=1;rank=8 scaffold_8 . CDS 861910 862644 . + 0 ID=Physo129680;Parent=Physo129680;rank=9 scaffold_8 . exon 861910 862644 . + . ID=Physo129680.9;Parent=Physo129680;constitutive=1;rank=9 scaffold_8 . biological_region 864123 864123 0.999 + . logic_name=eponine scaffold_8 . biological_region 864165 864168 0.999 + . logic_name=eponine scaffold_8 . biological_region 864230 864232 0.999 + . logic_name=eponine scaffold_8 . biological_region 864290 864296 0.999 - . logic_name=eponine scaffold_8 . biological_region 864492 864495 0.999 - . logic_name=eponine scaffold_8 . biological_region 864545 864547 0.999 - . logic_name=eponine scaffold_8 . biological_region 864600 864602 0.999 + . logic_name=eponine scaffold_8 . biological_region 864691 864696 0.999 - . logic_name=eponine scaffold_8 . biological_region 864709 864714 0.999 + . logic_name=eponine scaffold_8 . biological_region 864746 864753 0.999 + . logic_name=eponine scaffold_8 . biological_region 864777 864778 0.999 + . logic_name=eponine scaffold_8 . biological_region 864790 864791 0.999 - . logic_name=eponine scaffold_8 . biological_region 864837 864843 0.999 - . logic_name=eponine scaffold_8 . biological_region 864858 864860 0.999 - . logic_name=eponine scaffold_8 . biological_region 864864 864868 0.999 + . logic_name=eponine scaffold_8 . biological_region 864895 864897 0.999 + . logic_name=eponine scaffold_8 . biological_region 865012 865018 0.999 - . logic_name=eponine scaffold_8 . biological_region 865027 865030 0.999 + . logic_name=eponine scaffold_8 . biological_region 865049 865051 0.999 - . logic_name=eponine scaffold_8 . biological_region 865054 865059 0.999 + . logic_name=eponine scaffold_8 . biological_region 865101 865110 0.999 - . logic_name=eponine scaffold_8 . biological_region 865126 865127 0.999 - . logic_name=eponine scaffold_8 . biological_region 865148 865152 0.999 - . logic_name=eponine scaffold_8 . biological_region 865184 865187 0.999 + . logic_name=eponine scaffold_8 . biological_region 865187 865197 0.999 - . logic_name=eponine scaffold_8 . biological_region 865247 865253 0.999 + . logic_name=eponine scaffold_8 . biological_region 865390 865394 0.999 - . logic_name=eponine scaffold_8 . biological_region 866009 866011 0.999 - . logic_name=eponine scaffold_8 . biological_region 866939 866940 0.999 + . logic_name=eponine scaffold_8 . biological_region 867119 867121 0.999 + . logic_name=eponine scaffold_8 . biological_region 867144 867147 0.999 - . logic_name=eponine scaffold_8 . biological_region 868267 868270 0.999 - . logic_name=eponine scaffold_8 . biological_region 873272 873272 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 863834 865132 . - . ID=Physo129681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80192;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 863834 865132 . - . ID=Physo129681;Parent=Physo129681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 863834 865132 . - 0 ID=Physo129681;Parent=Physo129681;rank=1 scaffold_8 . exon 863834 865132 . - . ID=Physo129681.1;Parent=Physo129681;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 866525 867494 . + . ID=Physo129682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80193;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 866525 867494 . + . ID=Physo129682;Parent=Physo129682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 866525 866736 . + 0 ID=Physo129682;Parent=Physo129682;rank=1 scaffold_8 . exon 866525 866736 . + . ID=Physo129682.1;Parent=Physo129682;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 866792 867494 . + 0 ID=Physo129682;Parent=Physo129682;rank=2 scaffold_8 . exon 866792 867494 . + . ID=Physo129682.2;Parent=Physo129682;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 ensembl protein_coding_gene 871397 873905 . - . ID=Physo129683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80194;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 871397 873905 . - . ID=Physo129683;Parent=Physo129683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 871397 871452 . - 0 ID=Physo129683;Parent=Physo129683;rank=3 scaffold_8 . exon 871397 871452 . - . ID=Physo129683.3;Parent=Physo129683;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 871520 872402 . - 0 ID=Physo129683;Parent=Physo129683;rank=2 scaffold_8 . exon 871520 872402 . - . ID=Physo129683.2;Parent=Physo129683;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 872589 873905 . - 0 ID=Physo129683;Parent=Physo129683;rank=1 scaffold_8 . exon 872589 873905 . - . ID=Physo129683.1;Parent=Physo129683;constitutive=1;rank=1 scaffold_8 . repeat_region 875161 875169 . ? . description=dust scaffold_8 . repeat_region 876268 876286 . ? . description=dust scaffold_8 . repeat_region 883667 887424 . ? . description=dust scaffold_8 ensembl protein_coding_gene 876491 877735 . - . ID=Physo129684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80195;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 876491 877735 . - . ID=Physo129684;Parent=Physo129684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 876491 877735 . - 0 ID=Physo129684;Parent=Physo129684;rank=1 scaffold_8 . exon 876491 877735 . - . ID=Physo129684.1;Parent=Physo129684;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 879622 880350 . - . ID=Physo129685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80196;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 879622 880350 . - . ID=Physo129685;Parent=Physo129685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 879622 879677 . - 0 ID=Physo129685;Parent=Physo129685;rank=2 scaffold_8 . exon 879622 879677 . - . ID=Physo129685.2;Parent=Physo129685;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 879759 880350 . - 0 ID=Physo129685;Parent=Physo129685;rank=1 scaffold_8 . exon 879759 880350 . - . ID=Physo129685.1;Parent=Physo129685;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . biological_region 889236 889237 0.999 - . logic_name=eponine scaffold_8 . biological_region 889253 889258 0.999 - . logic_name=eponine scaffold_8 . repeat_region 889385 889404 . ? . description=trf scaffold_8 . biological_region 889392 889397 0.999 + . logic_name=eponine scaffold_8 . biological_region 889419 889425 0.999 - . logic_name=eponine scaffold_8 . biological_region 889605 889606 0.999 + . logic_name=eponine scaffold_8 . biological_region 889673 889676 0.999 - . logic_name=eponine scaffold_8 . biological_region 889682 889684 0.999 - . logic_name=eponine scaffold_8 . biological_region 889705 889706 0.999 - . logic_name=eponine scaffold_8 . biological_region 889879 889885 0.999 - . logic_name=eponine scaffold_8 . biological_region 889901 889906 0.999 - . logic_name=eponine scaffold_8 . biological_region 889918 889923 0.999 - . logic_name=eponine scaffold_8 . biological_region 889939 889940 0.999 + . logic_name=eponine scaffold_8 . biological_region 889955 889964 0.999 + . logic_name=eponine scaffold_8 . biological_region 890009 890014 0.999 - . logic_name=eponine scaffold_8 . biological_region 890028 890030 0.999 + . logic_name=eponine scaffold_8 . biological_region 890055 890060 0.999 - . logic_name=eponine scaffold_8 . biological_region 890064 890067 0.999 + . logic_name=eponine scaffold_8 . biological_region 890084 890085 0.999 - . logic_name=eponine scaffold_8 . repeat_region 892374 892397 . ? . description=trf scaffold_8 ensembl protein_coding_gene 887533 887778 . + . ID=Physo112202;biotype=protein_coding;external_name=estExt_Genewise1.C_80161;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 887533 887778 . + . ID=Physo112202;Parent=Physo112202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 887533 887778 . + . ID=Physo112202.1;Parent=Physo112202;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 887536 887778 . + 0 ID=Physo112202;Parent=Physo112202;rank=1 scaffold_8 ensembl protein_coding_gene 889201 890340 . + . ID=Physo129686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80197;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 889201 890340 . + . ID=Physo129686;Parent=Physo129686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 889201 890340 . + 0 ID=Physo129686;Parent=Physo129686;rank=1 scaffold_8 . exon 889201 890340 . + . ID=Physo129686.1;Parent=Physo129686;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 892592 901406 . + . ID=Physo129687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80198;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 892592 901406 . + . ID=Physo129687;Parent=Physo129687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 892592 892602 . + 0 ID=Physo129687;Parent=Physo129687;rank=1 scaffold_8 . exon 892592 892602 . + . ID=Physo129687.1;Parent=Physo129687;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . CDS 892645 892670 . + 0 ID=Physo129687;Parent=Physo129687;rank=2 scaffold_8 . exon 892645 892670 . + . ID=Physo129687.2;Parent=Physo129687;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 892739 892790 . + 0 ID=Physo129687;Parent=Physo129687;rank=3 scaffold_8 . exon 892739 892790 . + . ID=Physo129687.3;Parent=Physo129687;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_8 . CDS 893511 893517 . + 0 ID=Physo129687;Parent=Physo129687;rank=4 scaffold_8 . exon 893511 893517 . + . ID=Physo129687.4;Parent=Physo129687;constitutive=1;ensembl_phase=2;rank=4 scaffold_8 . CDS 893552 893623 . + 0 ID=Physo129687;Parent=Physo129687;rank=5 scaffold_8 . exon 893552 893623 . + . ID=Physo129687.5;Parent=Physo129687;constitutive=1;rank=5 scaffold_8 . CDS 893748 895767 . + 0 ID=Physo129687;Parent=Physo129687;rank=6 scaffold_8 . CDS 896151 896617 . + 0 ID=Physo129687;Parent=Physo129687;rank=7 scaffold_8 . CDS 896674 897145 . + 0 ID=Physo129687;Parent=Physo129687;rank=8 scaffold_8 . CDS 897738 897897 . + 0 ID=Physo129687;Parent=Physo129687;rank=9 scaffold_8 . CDS 898257 898646 . + 0 ID=Physo129687;Parent=Physo129687;rank=10 scaffold_8 . CDS 898865 899214 . + 0 ID=Physo129687;Parent=Physo129687;rank=11 scaffold_8 . CDS 899310 899648 . + 0 ID=Physo129687;Parent=Physo129687;rank=12 scaffold_8 . CDS 899741 900174 . + 0 ID=Physo129687;Parent=Physo129687;rank=13 scaffold_8 . CDS 900282 901406 . + 0 ID=Physo129687;Parent=Physo129687;rank=14 scaffold_8 . repeat_region 897190 897678 . ? . description=dust scaffold_8 . exon 893748 895767 . + . ID=Physo129687.6;Parent=Physo129687;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_8 . exon 896151 896617 . + . ID=Physo129687.7;Parent=Physo129687;constitutive=1;ensembl_phase=1;rank=7 scaffold_8 . exon 896674 897145 . + . ID=Physo129687.8;Parent=Physo129687;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_8 . exon 897738 897897 . + . ID=Physo129687.9;Parent=Physo129687;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_8 . exon 898257 898646 . + . ID=Physo129687.10;Parent=Physo129687;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_8 . exon 898865 899214 . + . ID=Physo129687.11;Parent=Physo129687;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_8 . exon 899310 899648 . + . ID=Physo129687.12;Parent=Physo129687;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_8 . exon 899741 900174 . + . ID=Physo129687.13;Parent=Physo129687;constitutive=1;ensembl_phase=1;rank=13 scaffold_8 . exon 900282 901406 . + . ID=Physo129687.14;Parent=Physo129687;constitutive=1;rank=14 scaffold_8 ensembl protein_coding_gene 903172 903727 . - . ID=Physo129688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80199;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 903172 903727 . - . ID=Physo129688;Parent=Physo129688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 903172 903372 . - 0 ID=Physo129688;Parent=Physo129688;rank=2 scaffold_8 . exon 903172 903372 . - . ID=Physo129688.2;Parent=Physo129688;constitutive=1;rank=2 scaffold_8 . CDS 903425 903727 . - 0 ID=Physo129688;Parent=Physo129688;rank=1 scaffold_8 . exon 903425 903727 . - . ID=Physo129688.1;Parent=Physo129688;constitutive=1;rank=1 scaffold_8 . repeat_region 906521 906544 . ? . description=trf scaffold_8 . repeat_region 911744 911785 . ? . description=trf scaffold_8 ensembl protein_coding_gene 912682 913194 . + . ID=Physo129689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80200;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 912682 913194 . + . ID=Physo129689;Parent=Physo129689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 912682 913194 . + 0 ID=Physo129689;Parent=Physo129689;rank=1 scaffold_8 . exon 912682 913194 . + . ID=Physo129689.1;Parent=Physo129689;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 913401 920986 . - . ID=Physo129690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80201;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 913401 920986 . - . ID=Physo129690;Parent=Physo129690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 913401 913734 . - 0 ID=Physo129690;Parent=Physo129690;rank=13 scaffold_8 . exon 913401 913734 . - . ID=Physo129690.13;Parent=Physo129690;constitutive=1;ensembl_phase=2;rank=13 scaffold_8 . CDS 914098 915194 . - 0 ID=Physo129690;Parent=Physo129690;rank=12 scaffold_8 . CDS 915231 915477 . - 0 ID=Physo129690;Parent=Physo129690;rank=11 scaffold_8 . CDS 916082 916440 . - 0 ID=Physo129690;Parent=Physo129690;rank=10 scaffold_8 . CDS 916514 916660 . - 0 ID=Physo129690;Parent=Physo129690;rank=9 scaffold_8 . CDS 916772 917586 . - 0 ID=Physo129690;Parent=Physo129690;rank=8 scaffold_8 . CDS 917683 918420 . - 0 ID=Physo129690;Parent=Physo129690;rank=7 scaffold_8 . CDS 918676 918889 . - 0 ID=Physo129690;Parent=Physo129690;rank=6 scaffold_8 . CDS 919028 919143 . - 0 ID=Physo129690;Parent=Physo129690;rank=5 scaffold_8 . CDS 919264 920061 . - 0 ID=Physo129690;Parent=Physo129690;rank=4 scaffold_8 . CDS 920110 920257 . - 0 ID=Physo129690;Parent=Physo129690;rank=3 scaffold_8 . CDS 920442 920486 . - 0 ID=Physo129690;Parent=Physo129690;rank=2 scaffold_8 . CDS 920516 920986 . - 0 ID=Physo129690;Parent=Physo129690;rank=1 scaffold_8 . biological_region 920257 920259 0.999 - . logic_name=eponine scaffold_8 . exon 914098 915194 . - . ID=Physo129690.12;Parent=Physo129690;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_8 . exon 915231 915477 . - . ID=Physo129690.11;Parent=Physo129690;constitutive=1;ensembl_phase=2;rank=11 scaffold_8 . exon 916082 916440 . - . ID=Physo129690.10;Parent=Physo129690;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_8 . exon 916514 916660 . - . ID=Physo129690.9;Parent=Physo129690;constitutive=1;rank=9 scaffold_8 . exon 916772 917586 . - . ID=Physo129690.8;Parent=Physo129690;constitutive=1;ensembl_phase=1;rank=8 scaffold_8 . exon 917683 918420 . - . ID=Physo129690.7;Parent=Physo129690;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_8 . exon 918676 918889 . - . ID=Physo129690.6;Parent=Physo129690;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_8 . exon 919028 919143 . - . ID=Physo129690.5;Parent=Physo129690;constitutive=1;ensembl_phase=1;rank=5 scaffold_8 . exon 919264 920061 . - . ID=Physo129690.4;Parent=Physo129690;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_8 . exon 920110 920257 . - . ID=Physo129690.3;Parent=Physo129690;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . exon 920442 920486 . - . ID=Physo129690.2;Parent=Physo129690;constitutive=1;rank=2 scaffold_8 . exon 920516 920986 . - . ID=Physo129690.1;Parent=Physo129690;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 921870 922405 . - . ID=Physo129691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80202;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 921870 922405 . - . ID=Physo129691;Parent=Physo129691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 921870 921914 . - 0 ID=Physo129691;Parent=Physo129691;rank=2 scaffold_8 . exon 921870 921914 . - . ID=Physo129691.2;Parent=Physo129691;constitutive=1;rank=2 scaffold_8 . CDS 921947 922405 . - 0 ID=Physo129691;Parent=Physo129691;rank=1 scaffold_8 . exon 921947 922405 . - . ID=Physo129691.1;Parent=Physo129691;constitutive=1;rank=1 scaffold_8 . repeat_region 923462 923476 . ? . description=dust scaffold_8 . repeat_region 923790 923831 . ? . description=trf scaffold_8 . repeat_region 930938 930962 . ? . description=trf scaffold_8 . repeat_region 932301 932310 . ? . description=dust scaffold_8 . repeat_region 933083 933090 . ? . description=dust scaffold_8 ensembl protein_coding_gene 927238 928213 . - . ID=Physo129692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80203;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 927238 928213 . - . ID=Physo129692;Parent=Physo129692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 927238 927267 . - 0 ID=Physo129692;Parent=Physo129692;rank=4 scaffold_8 . exon 927238 927267 . - . ID=Physo129692.4;Parent=Physo129692;constitutive=1;rank=4 scaffold_8 . CDS 927335 927525 . - 0 ID=Physo129692;Parent=Physo129692;rank=3 scaffold_8 . exon 927335 927525 . - . ID=Physo129692.3;Parent=Physo129692;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 927574 927667 . - 0 ID=Physo129692;Parent=Physo129692;rank=2 scaffold_8 . exon 927574 927667 . - . ID=Physo129692.2;Parent=Physo129692;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 927779 928213 . - 0 ID=Physo129692;Parent=Physo129692;rank=1 scaffold_8 . exon 927779 928213 . - . ID=Physo129692.1;Parent=Physo129692;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 929954 931174 . - . ID=Physo129693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80204;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 929954 931174 . - . ID=Physo129693;Parent=Physo129693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 929954 929963 . - 0 ID=Physo129693;Parent=Physo129693;rank=3 scaffold_8 . exon 929954 929963 . - . ID=Physo129693.3;Parent=Physo129693;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 930055 930223 . - 0 ID=Physo129693;Parent=Physo129693;rank=2 scaffold_8 . exon 930055 930223 . - . ID=Physo129693.2;Parent=Physo129693;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_8 . CDS 930298 931174 . - 0 ID=Physo129693;Parent=Physo129693;rank=1 scaffold_8 . exon 930298 931174 . - . ID=Physo129693.1;Parent=Physo129693;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 933189 934692 . + . ID=Physo129694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80205;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 933189 934692 . + . ID=Physo129694;Parent=Physo129694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 933189 934221 . + 0 ID=Physo129694;Parent=Physo129694;rank=1 scaffold_8 . exon 933189 934221 . + . ID=Physo129694.1;Parent=Physo129694;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 934380 934508 . + 0 ID=Physo129694;Parent=Physo129694;rank=2 scaffold_8 . CDS 934529 934692 . + 0 ID=Physo129694;Parent=Physo129694;rank=3 scaffold_8 . biological_region 933549 933557 0.999 - . logic_name=eponine scaffold_8 . biological_region 933552 933556 0.999 + . logic_name=eponine scaffold_8 . biological_region 933738 933743 0.999 - . logic_name=eponine scaffold_8 . biological_region 934101 934104 0.999 + . logic_name=eponine scaffold_8 . repeat_region 935315 936414 . - . description=GypsyPi-1c_I-int scaffold_8 . biological_region 936084 936086 0.999 + . logic_name=eponine scaffold_8 . repeat_region 936417 937645 . - . description=GypsyPi-1c_I-int scaffold_8 . biological_region 938245 938247 0.999 - . logic_name=eponine scaffold_8 . biological_region 938314 938315 0.999 - . logic_name=eponine scaffold_8 . biological_region 938715 938715 0.999 + . logic_name=eponine scaffold_8 . biological_region 940790 940794 0.999 - . logic_name=eponine scaffold_8 . biological_region 942010 942013 0.999 - . logic_name=eponine scaffold_8 . exon 934380 934508 . + . ID=Physo129694.2;Parent=Physo129694;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . exon 934529 934692 . + . ID=Physo129694.3;Parent=Physo129694;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 ensembl protein_coding_gene 935060 938017 . - . ID=Physo129695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80206;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 935060 938017 . - . ID=Physo129695;Parent=Physo129695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 935060 935078 . - 0 ID=Physo129695;Parent=Physo129695;rank=3 scaffold_8 . exon 935060 935078 . - . ID=Physo129695.3;Parent=Physo129695;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 935117 937765 . - 0 ID=Physo129695;Parent=Physo129695;rank=2 scaffold_8 . exon 935117 937765 . - . ID=Physo129695.2;Parent=Physo129695;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 937938 938017 . - 0 ID=Physo129695;Parent=Physo129695;rank=1 scaffold_8 . exon 937938 938017 . - . ID=Physo129695.1;Parent=Physo129695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . repeat_region 944438 944445 . ? . description=dust scaffold_8 . repeat_region 945414 945491 . ? . description=trf scaffold_8 . repeat_region 945440 945506 . ? . description=trf scaffold_8 . repeat_region 945619 945679 . ? . description=trf scaffold_8 . repeat_region 946604 946642 . ? . description=trf scaffold_8 . repeat_region 949315 949377 . ? . description=trf scaffold_8 . repeat_region 949799 949862 . ? . description=trf scaffold_8 . repeat_region 949828 949924 . ? . description=trf scaffold_8 . repeat_region 949828 949930 . ? . description=trf scaffold_8 ensembl protein_coding_gene 951116 952207 . + . ID=Physo129696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80207;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 951116 952207 . + . ID=Physo129696;Parent=Physo129696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 951116 952207 . + 0 ID=Physo129696;Parent=Physo129696;rank=1 scaffold_8 . exon 951116 952207 . + . ID=Physo129696.1;Parent=Physo129696;constitutive=1;rank=1 scaffold_8 . biological_region 956092 956093 0.999 + . logic_name=eponine scaffold_8 . biological_region 959057 959059 0.999 - . logic_name=eponine scaffold_8 . biological_region 962458 962460 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 953776 954837 . + . ID=Physo129697;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80208;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 953776 954837 . + . ID=Physo129697;Parent=Physo129697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 953776 954837 . + 0 ID=Physo129697;Parent=Physo129697;rank=1 scaffold_8 . exon 953776 954837 . + . ID=Physo129697.1;Parent=Physo129697;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 955811 956113 . + . ID=Physo129698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80209;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 955811 956113 . + . ID=Physo129698;Parent=Physo129698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 955811 956113 . + 0 ID=Physo129698;Parent=Physo129698;rank=1 scaffold_8 . exon 955811 956113 . + . ID=Physo129698.1;Parent=Physo129698;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 957463 958440 . + . ID=Physo129699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80210;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 957463 958440 . + . ID=Physo129699;Parent=Physo129699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 957463 958440 . + 0 ID=Physo129699;Parent=Physo129699;rank=1 scaffold_8 . exon 957463 958440 . + . ID=Physo129699.1;Parent=Physo129699;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 959263 960303 . + . ID=Physo129700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80211;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 959263 960303 . + . ID=Physo129700;Parent=Physo129700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 959263 960303 . + 0 ID=Physo129700;Parent=Physo129700;rank=1 scaffold_8 . exon 959263 960303 . + . ID=Physo129700.1;Parent=Physo129700;constitutive=1;rank=1 scaffold_8 . repeat_region 964753 964766 . ? . description=dust scaffold_8 . repeat_region 967003 967014 . ? . description=dust scaffold_8 . repeat_region 967384 967419 . ? . description=trf scaffold_8 . repeat_region 972339 972359 . ? . description=trf scaffold_8 ensembl protein_coding_gene 969992 970965 . + . ID=Physo129701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80212;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 969992 970965 . + . ID=Physo129701;Parent=Physo129701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 969992 970600 . + 0 ID=Physo129701;Parent=Physo129701;rank=1 scaffold_8 . exon 969992 970600 . + . ID=Physo129701.1;Parent=Physo129701;constitutive=1;rank=1 scaffold_8 . CDS 970768 970965 . + 0 ID=Physo129701;Parent=Physo129701;rank=2 scaffold_8 . exon 970768 970965 . + . ID=Physo129701.2;Parent=Physo129701;constitutive=1;rank=2 scaffold_8 ensembl protein_coding_gene 972809 974452 . - . ID=Physo129702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80213;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 972809 974452 . - . ID=Physo129702;Parent=Physo129702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 972809 974196 . - 0 ID=Physo129702;Parent=Physo129702;rank=2 scaffold_8 . exon 972809 974196 . - . ID=Physo129702.2;Parent=Physo129702;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 974329 974452 . - 0 ID=Physo129702;Parent=Physo129702;rank=1 scaffold_8 . biological_region 973517 973520 0.999 - . logic_name=eponine scaffold_8 . biological_region 973882 973883 0.999 - . logic_name=eponine scaffold_8 . biological_region 975895 975898 0.999 + . logic_name=eponine scaffold_8 . biological_region 977512 977512 0.999 + . logic_name=eponine scaffold_8 . biological_region 977587 977590 0.999 - . logic_name=eponine scaffold_8 . biological_region 977618 977623 0.999 - . logic_name=eponine scaffold_8 . biological_region 978965 978965 0.999 - . logic_name=eponine scaffold_8 . biological_region 979363 979367 0.999 + . logic_name=eponine scaffold_8 . biological_region 979573 979574 0.999 - . logic_name=eponine scaffold_8 . biological_region 980293 980296 0.999 + . logic_name=eponine scaffold_8 . biological_region 981212 981214 0.999 + . logic_name=eponine scaffold_8 . biological_region 981289 981290 0.999 + . logic_name=eponine scaffold_8 . exon 974329 974452 . - . ID=Physo129702.1;Parent=Physo129702;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 976494 987661 . - . ID=Physo129703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80214;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 976494 987661 . - . ID=Physo129703;Parent=Physo129703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 976494 986984 . - 0 ID=Physo129703;Parent=Physo129703;rank=3 scaffold_8 . exon 976494 986984 . - . ID=Physo129703.3;Parent=Physo129703;constitutive=1;rank=3 scaffold_8 . CDS 987248 987445 . - 0 ID=Physo129703;Parent=Physo129703;rank=2 scaffold_8 . CDS 987614 987661 . - 0 ID=Physo129703;Parent=Physo129703;rank=1 scaffold_8 . repeat_region 987126 987134 . ? . description=dust scaffold_8 . repeat_region 988106 988114 . ? . description=dust scaffold_8 . repeat_region 990812 990866 . ? . description=trf scaffold_8 . exon 987248 987445 . - . ID=Physo129703.2;Parent=Physo129703;constitutive=1;rank=2 scaffold_8 . exon 987614 987661 . - . ID=Physo129703.1;Parent=Physo129703;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 992189 993784 . + . ID=Physo129704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80215;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 992189 993784 . + . ID=Physo129704;Parent=Physo129704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 992189 992312 . + 0 ID=Physo129704;Parent=Physo129704;rank=1 scaffold_8 . exon 992189 992312 . + . ID=Physo129704.1;Parent=Physo129704;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 992445 993784 . + 0 ID=Physo129704;Parent=Physo129704;rank=2 scaffold_8 . exon 992445 993784 . + . ID=Physo129704.2;Parent=Physo129704;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . biological_region 993123 993123 0.999 + . logic_name=eponine scaffold_8 . biological_region 1001898 1001900 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 998804 999777 . - . ID=Physo129705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80216;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 998804 999777 . - . ID=Physo129705;Parent=Physo129705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 998804 998833 . - 0 ID=Physo129705;Parent=Physo129705;rank=4 scaffold_8 . exon 998804 998833 . - . ID=Physo129705.4;Parent=Physo129705;constitutive=1;rank=4 scaffold_8 . CDS 998931 999128 . - 0 ID=Physo129705;Parent=Physo129705;rank=3 scaffold_8 . exon 998931 999128 . - . ID=Physo129705.3;Parent=Physo129705;constitutive=1;rank=3 scaffold_8 . CDS 999202 999403 . - 0 ID=Physo129705;Parent=Physo129705;rank=2 scaffold_8 . exon 999202 999403 . - . ID=Physo129705.2;Parent=Physo129705;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 999548 999777 . - 0 ID=Physo129705;Parent=Physo129705;rank=1 scaffold_8 . exon 999548 999777 . - . ID=Physo129705.1;Parent=Physo129705;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 1000178 1003689 . - . ID=Physo129706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80217;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1000178 1003689 . - . ID=Physo129706;Parent=Physo129706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1000178 1000210 . - 0 ID=Physo129706;Parent=Physo129706;rank=9 scaffold_8 . exon 1000178 1000210 . - . ID=Physo129706.9;Parent=Physo129706;constitutive=1;rank=9 scaffold_8 . CDS 1000296 1000493 . - 0 ID=Physo129706;Parent=Physo129706;rank=8 scaffold_8 . exon 1000296 1000493 . - . ID=Physo129706.8;Parent=Physo129706;constitutive=1;rank=8 scaffold_8 . CDS 1000558 1000705 . - 0 ID=Physo129706;Parent=Physo129706;rank=7 scaffold_8 . exon 1000558 1000705 . - . ID=Physo129706.7;Parent=Physo129706;constitutive=1;ensembl_phase=2;rank=7 scaffold_8 . CDS 1000906 1001459 . - 0 ID=Physo129706;Parent=Physo129706;rank=6 scaffold_8 . exon 1000906 1001459 . - . ID=Physo129706.6;Parent=Physo129706;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_8 . CDS 1001624 1001911 . - 0 ID=Physo129706;Parent=Physo129706;rank=5 scaffold_8 . exon 1001624 1001911 . - . ID=Physo129706.5;Parent=Physo129706;constitutive=1;rank=5 scaffold_8 . CDS 1002471 1002668 . - 0 ID=Physo129706;Parent=Physo129706;rank=4 scaffold_8 . exon 1002471 1002668 . - . ID=Physo129706.4;Parent=Physo129706;constitutive=1;rank=4 scaffold_8 . CDS 1002742 1003009 . - 0 ID=Physo129706;Parent=Physo129706;rank=3 scaffold_8 . exon 1002742 1003009 . - . ID=Physo129706.3;Parent=Physo129706;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 1003080 1003151 . - 0 ID=Physo129706;Parent=Physo129706;rank=2 scaffold_8 . CDS 1003310 1003689 . - 0 ID=Physo129706;Parent=Physo129706;rank=1 scaffold_8 . repeat_region 1003183 1003200 . ? . description=dust scaffold_8 . repeat_region 1007226 1007234 . ? . description=dust scaffold_8 . repeat_region 1008479 1008560 . + . description=(CTG)n scaffold_8 . repeat_region 1008512 1008537 . ? . description=dust scaffold_8 . repeat_region 1008512 1008537 . ? . description=trf scaffold_8 . repeat_region 1008512 1008537 . ? . description=trf scaffold_8 . repeat_region 1008879 1008886 . ? . description=dust scaffold_8 . repeat_region 1011247 1011551 . - . description=GypsyPi-1c_LTR scaffold_8 . repeat_region 1012679 1012814 . ? . description=trf scaffold_8 . exon 1003080 1003151 . - . ID=Physo129706.2;Parent=Physo129706;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . exon 1003310 1003689 . - . ID=Physo129706.1;Parent=Physo129706;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 1005183 1006825 . - . ID=Physo129707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80218;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1005183 1006825 . - . ID=Physo129707;Parent=Physo129707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1005183 1005304 . - 0 ID=Physo129707;Parent=Physo129707;rank=5 scaffold_8 . exon 1005183 1005304 . - . ID=Physo129707.5;Parent=Physo129707;constitutive=1;ensembl_phase=1;rank=5 scaffold_8 . CDS 1005355 1005565 . - 0 ID=Physo129707;Parent=Physo129707;rank=4 scaffold_8 . exon 1005355 1005565 . - . ID=Physo129707.4;Parent=Physo129707;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_8 . CDS 1006054 1006251 . - 0 ID=Physo129707;Parent=Physo129707;rank=3 scaffold_8 . exon 1006054 1006251 . - . ID=Physo129707.3;Parent=Physo129707;constitutive=1;rank=3 scaffold_8 . CDS 1006325 1006538 . - 0 ID=Physo129707;Parent=Physo129707;rank=2 scaffold_8 . exon 1006325 1006538 . - . ID=Physo129707.2;Parent=Physo129707;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 1006695 1006825 . - 0 ID=Physo129707;Parent=Physo129707;rank=1 scaffold_8 . exon 1006695 1006825 . - . ID=Physo129707.1;Parent=Physo129707;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 ensembl protein_coding_gene 1008213 1010509 . - . ID=Physo129708;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80219;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1008213 1010509 . - . ID=Physo129708;Parent=Physo129708;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1008213 1008737 . - 0 ID=Physo129708;Parent=Physo129708;rank=3 scaffold_8 . exon 1008213 1008737 . - . ID=Physo129708.3;Parent=Physo129708;constitutive=1;rank=3 scaffold_8 . CDS 1008902 1010382 . - 0 ID=Physo129708;Parent=Physo129708;rank=2 scaffold_8 . exon 1008902 1010382 . - . ID=Physo129708.2;Parent=Physo129708;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 1010446 1010509 . - 0 ID=Physo129708;Parent=Physo129708;rank=1 scaffold_8 . exon 1010446 1010509 . - . ID=Physo129708.1;Parent=Physo129708;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . repeat_region 1013055 1013132 . - . description=GypsyPi-1c_I-int scaffold_8 . repeat_region 1014002 1014094 . - . description=GypsyPi-1c_I-int scaffold_8 . repeat_region 1014073 1016204 . - . description=GypsyPi-1c_I-int scaffold_8 . biological_region 1019818 1019819 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 1014998 1016117 . - . ID=Physo129709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80220;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1014998 1016117 . - . ID=Physo129709;Parent=Physo129709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1014998 1015086 . - 0 ID=Physo129709;Parent=Physo129709;rank=2 scaffold_8 . exon 1014998 1015086 . - . ID=Physo129709.2;Parent=Physo129709;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 1015157 1016117 . - 0 ID=Physo129709;Parent=Physo129709;rank=1 scaffold_8 . exon 1015157 1016117 . - . ID=Physo129709.1;Parent=Physo129709;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . repeat_region 1028643 1028650 . ? . description=dust scaffold_8 ensembl protein_coding_gene 1027487 1028230 . - . ID=Physo108404;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_80014;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1027487 1028230 . - . ID=Physo108404;Parent=Physo108404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1027487 1028230 . - 0 ID=Physo108404;Parent=Physo108404;rank=1 scaffold_8 . exon 1027487 1028230 . - . ID=Physo108404.1;Parent=Physo108404;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 1030181 1031726 . + . ID=Physo129711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80222;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1030181 1031726 . + . ID=Physo129711;Parent=Physo129711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1030181 1031110 . + 0 ID=Physo129711;Parent=Physo129711;rank=1 scaffold_8 . exon 1030181 1031110 . + . ID=Physo129711.1;Parent=Physo129711;constitutive=1;rank=1 scaffold_8 . CDS 1031203 1031234 . + 0 ID=Physo129711;Parent=Physo129711;rank=2 scaffold_8 . exon 1031203 1031234 . + . ID=Physo129711.2;Parent=Physo129711;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 1031412 1031542 . + 0 ID=Physo129711;Parent=Physo129711;rank=3 scaffold_8 . exon 1031412 1031542 . + . ID=Physo129711.3;Parent=Physo129711;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 1031584 1031726 . + 0 ID=Physo129711;Parent=Physo129711;rank=4 scaffold_8 . exon 1031584 1031726 . + . ID=Physo129711.4;Parent=Physo129711;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 ensembl protein_coding_gene 1031960 1035365 . - . ID=Physo129712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80223;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1031960 1035365 . - . ID=Physo129712;Parent=Physo129712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1031960 1031972 . - 0 ID=Physo129712;Parent=Physo129712;rank=6 scaffold_8 . exon 1031960 1031972 . - . ID=Physo129712.6;Parent=Physo129712;constitutive=1;ensembl_phase=2;rank=6 scaffold_8 . CDS 1032026 1032513 . - 0 ID=Physo129712;Parent=Physo129712;rank=5 scaffold_8 . exon 1032026 1032513 . - . ID=Physo129712.5;Parent=Physo129712;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_8 . CDS 1032741 1032841 . - 0 ID=Physo129712;Parent=Physo129712;rank=4 scaffold_8 . CDS 1032995 1034084 . - 0 ID=Physo129712;Parent=Physo129712;rank=3 scaffold_8 . CDS 1034161 1034918 . - 0 ID=Physo129712;Parent=Physo129712;rank=2 scaffold_8 . CDS 1035116 1035365 . - 0 ID=Physo129712;Parent=Physo129712;rank=1 scaffold_8 . repeat_region 1032291 1034692 . - . description=GypsyPi-1c_I-int scaffold_8 . biological_region 1033139 1033141 0.999 + . logic_name=eponine scaffold_8 . biological_region 1035221 1035224 0.999 + . logic_name=eponine scaffold_8 . biological_region 1035357 1035358 0.999 - . logic_name=eponine scaffold_8 . biological_region 1038381 1038382 0.999 + . logic_name=eponine scaffold_8 . biological_region 1038515 1038518 0.999 - . logic_name=eponine scaffold_8 . repeat_region 1039046 1041418 . + . description=GypsyPi-1c_I-int scaffold_8 . biological_region 1040598 1040600 0.999 - . logic_name=eponine scaffold_8 . repeat_region 1041731 1041968 . + . description=GypsyPi-1c_I-int scaffold_8 . exon 1032741 1032841 . - . ID=Physo129712.4;Parent=Physo129712;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . exon 1032995 1034084 . - . ID=Physo129712.3;Parent=Physo129712;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . exon 1034161 1034918 . - . ID=Physo129712.2;Parent=Physo129712;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . exon 1035116 1035365 . - . ID=Physo129712.1;Parent=Physo129712;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 ensembl protein_coding_gene 1038373 1041749 . + . ID=Physo129713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80224;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1038373 1041749 . + . ID=Physo129713;Parent=Physo129713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1038373 1038622 . + 0 ID=Physo129713;Parent=Physo129713;rank=1 scaffold_8 . exon 1038373 1038622 . + . ID=Physo129713.1;Parent=Physo129713;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 1038820 1039577 . + 0 ID=Physo129713;Parent=Physo129713;rank=2 scaffold_8 . exon 1038820 1039577 . + . ID=Physo129713.2;Parent=Physo129713;constitutive=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 1039654 1040743 . + 0 ID=Physo129713;Parent=Physo129713;rank=3 scaffold_8 . exon 1039654 1040743 . + . ID=Physo129713.3;Parent=Physo129713;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 1040897 1041683 . + 0 ID=Physo129713;Parent=Physo129713;rank=4 scaffold_8 . exon 1040897 1041683 . + . ID=Physo129713.4;Parent=Physo129713;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_8 . CDS 1041737 1041749 . + 0 ID=Physo129713;Parent=Physo129713;rank=5 scaffold_8 . exon 1041737 1041749 . + . ID=Physo129713.5;Parent=Physo129713;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . repeat_region 1043562 1043570 . ? . description=dust scaffold_8 . repeat_region 1044040 1044096 . ? . description=trf scaffold_8 . repeat_region 1047153 1047191 . ? . description=trf scaffold_8 . repeat_region 1047927 1047968 . ? . description=trf scaffold_8 . repeat_region 1052369 1052391 . ? . description=dust scaffold_8 . biological_region 1056537 1056541 0.999 - . logic_name=eponine scaffold_8 . biological_region 1058343 1058343 0.999 + . logic_name=eponine scaffold_8 . biological_region 1058371 1058374 0.999 + . logic_name=eponine scaffold_8 . biological_region 1058625 1058626 0.999 + . logic_name=eponine scaffold_8 . biological_region 1061959 1061960 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 1055668 1056732 . + . ID=Physo129714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80225;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1055668 1056732 . + . ID=Physo129714;Parent=Physo129714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1055668 1056732 . + 0 ID=Physo129714;Parent=Physo129714;rank=1 scaffold_8 . exon 1055668 1056732 . + . ID=Physo129714.1;Parent=Physo129714;constitutive=1;rank=1 scaffold_8 ensembl protein_coding_gene 1060245 1061335 . + . ID=Physo129715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80226;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1060245 1061335 . + . ID=Physo129715;Parent=Physo129715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1060245 1060274 . + 0 ID=Physo129715;Parent=Physo129715;rank=1 scaffold_8 . exon 1060245 1060274 . + . ID=Physo129715.1;Parent=Physo129715;constitutive=1;rank=1 scaffold_8 . CDS 1060420 1060656 . + 0 ID=Physo129715;Parent=Physo129715;rank=2 scaffold_8 . exon 1060420 1060656 . + . ID=Physo129715.2;Parent=Physo129715;constitutive=1;rank=2 scaffold_8 . CDS 1060728 1060880 . + 0 ID=Physo129715;Parent=Physo129715;rank=3 scaffold_8 . exon 1060728 1060880 . + . ID=Physo129715.3;Parent=Physo129715;constitutive=1;rank=3 scaffold_8 . CDS 1060952 1061335 . + 0 ID=Physo129715;Parent=Physo129715;rank=4 scaffold_8 . exon 1060952 1061335 . + . ID=Physo129715.4;Parent=Physo129715;constitutive=1;rank=4 scaffold_8 . repeat_region 1064941 1064987 . ? . description=trf scaffold_8 . repeat_region 1067844 1067851 . ? . description=dust scaffold_8 . repeat_region 1068123 1068146 . ? . description=trf scaffold_8 . repeat_region 1070377 1070390 . ? . description=dust scaffold_8 . repeat_region 1070411 1070492 . ? . description=trf scaffold_8 ensembl protein_coding_gene 1065673 1068544 . - . ID=Physo129716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80227;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1065673 1068544 . - . ID=Physo129716;Parent=Physo129716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1065673 1065686 . - 0 ID=Physo129716;Parent=Physo129716;rank=5 scaffold_8 . exon 1065673 1065686 . - . ID=Physo129716.5;Parent=Physo129716;constitutive=1;ensembl_phase=1;rank=5 scaffold_8 . CDS 1065796 1066020 . - 0 ID=Physo129716;Parent=Physo129716;rank=4 scaffold_8 . exon 1065796 1066020 . - . ID=Physo129716.4;Parent=Physo129716;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 1066132 1067788 . - 0 ID=Physo129716;Parent=Physo129716;rank=3 scaffold_8 . exon 1066132 1067788 . - . ID=Physo129716.3;Parent=Physo129716;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_8 . CDS 1067868 1068287 . - 0 ID=Physo129716;Parent=Physo129716;rank=2 scaffold_8 . exon 1067868 1068287 . - . ID=Physo129716.2;Parent=Physo129716;constitutive=1;rank=2 scaffold_8 . CDS 1068356 1068403 . - 0 ID=Physo129716;Parent=Physo129716;rank=1 scaffold_8 . exon 1068356 1068544 . - . ID=Physo129716.1;Parent=Physo129716;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 . biological_region 1073540 1073546 0.999 + . logic_name=eponine scaffold_8 . biological_region 1074242 1074245 0.999 + . logic_name=eponine scaffold_8 . biological_region 1075168 1075172 0.999 - . logic_name=eponine scaffold_8 . biological_region 1075210 1075210 0.999 + . logic_name=eponine scaffold_8 . biological_region 1075349 1075349 0.999 - . logic_name=eponine scaffold_8 . biological_region 1075582 1075586 0.999 + . logic_name=eponine scaffold_8 . biological_region 1075750 1075754 0.999 + . logic_name=eponine scaffold_8 . biological_region 1076158 1076160 0.999 - . logic_name=eponine scaffold_8 . biological_region 1076534 1076536 0.999 - . logic_name=eponine scaffold_8 . biological_region 1076933 1076935 0.999 - . logic_name=eponine scaffold_8 . biological_region 1077289 1077291 0.999 + . logic_name=eponine scaffold_8 . biological_region 1079120 1079124 0.999 + . logic_name=eponine scaffold_8 ensembl protein_coding_gene 1073440 1077797 . + . ID=Physo129717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80228;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1073440 1077797 . + . ID=Physo129717;Parent=Physo129717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1073440 1073464 . + 0 ID=Physo129717;Parent=Physo129717;rank=1 scaffold_8 . exon 1073440 1073464 . + . ID=Physo129717.1;Parent=Physo129717;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . CDS 1073567 1073833 . + 0 ID=Physo129717;Parent=Physo129717;rank=2 scaffold_8 . exon 1073567 1073833 . + . ID=Physo129717.2;Parent=Physo129717;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_8 . CDS 1073884 1074101 . + 0 ID=Physo129717;Parent=Physo129717;rank=3 scaffold_8 . exon 1073884 1074101 . + . ID=Physo129717.3;Parent=Physo129717;constitutive=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 1074156 1074475 . + 0 ID=Physo129717;Parent=Physo129717;rank=4 scaffold_8 . exon 1074156 1074475 . + . ID=Physo129717.4;Parent=Physo129717;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_8 . CDS 1074598 1074760 . + 0 ID=Physo129717;Parent=Physo129717;rank=5 scaffold_8 . exon 1074598 1074760 . + . ID=Physo129717.5;Parent=Physo129717;constitutive=1;ensembl_phase=2;rank=5 scaffold_8 . CDS 1074863 1075179 . + 0 ID=Physo129717;Parent=Physo129717;rank=6 scaffold_8 . exon 1074863 1075179 . + . ID=Physo129717.6;Parent=Physo129717;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_8 . CDS 1075237 1075380 . + 0 ID=Physo129717;Parent=Physo129717;rank=7 scaffold_8 . exon 1075237 1075380 . + . ID=Physo129717.7;Parent=Physo129717;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_8 . CDS 1075452 1076729 . + 0 ID=Physo129717;Parent=Physo129717;rank=8 scaffold_8 . exon 1075452 1076729 . + . ID=Physo129717.8;Parent=Physo129717;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_8 . CDS 1076814 1077407 . + 0 ID=Physo129717;Parent=Physo129717;rank=9 scaffold_8 . exon 1076814 1077407 . + . ID=Physo129717.9;Parent=Physo129717;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_8 . CDS 1077467 1077544 . + 0 ID=Physo129717;Parent=Physo129717;rank=10 scaffold_8 . exon 1077467 1077544 . + . ID=Physo129717.10;Parent=Physo129717;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_8 . CDS 1077749 1077797 . + 0 ID=Physo129717;Parent=Physo129717;rank=11 scaffold_8 . exon 1077749 1077797 . + . ID=Physo129717.11;Parent=Physo129717;constitutive=1;ensembl_phase=2;rank=11 scaffold_8 ensembl protein_coding_gene 1078327 1081445 . - . ID=Physo129718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80229;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1078327 1081445 . - . ID=Physo129718;Parent=Physo129718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 1078327 1079368 . - . ID=Physo129718.3;Parent=Physo129718;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_8 . CDS 1078748 1079368 . - 0 ID=Physo129718;Parent=Physo129718;rank=3 scaffold_8 . CDS 1079406 1080342 . - 0 ID=Physo129718;Parent=Physo129718;rank=2 scaffold_8 . exon 1079406 1080342 . - . ID=Physo129718.2;Parent=Physo129718;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 1080436 1081445 . - 0 ID=Physo129718;Parent=Physo129718;rank=1 scaffold_8 . exon 1080436 1081445 . - . ID=Physo129718.1;Parent=Physo129718;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . repeat_region 1082911 1082967 . ? . description=trf scaffold_8 . repeat_region 1082913 1082964 . ? . description=dust scaffold_8 ensembl protein_coding_gene 1090540 1092558 . - . ID=Physo112206;biotype=protein_coding;external_name=estExt_Genewise1.C_80165;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1090540 1092558 . - . ID=Physo112206;Parent=Physo112206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1090540 1090774 . - 0 ID=Physo112206;Parent=Physo112206;rank=3 scaffold_8 . exon 1090540 1090774 . - . ID=Physo112206.3;Parent=Physo112206;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 1090835 1091518 . - 0 ID=Physo112206;Parent=Physo112206;rank=2 scaffold_8 . exon 1090835 1091518 . - . ID=Physo112206.2;Parent=Physo112206;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_8 . CDS 1091558 1092372 . - 0 ID=Physo112206;Parent=Physo112206;rank=1 scaffold_8 . exon 1091558 1092558 . - . ID=Physo112206.1;Parent=Physo112206;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 1084107 1086091 . + . ID=Physo129719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80230;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1084107 1086091 . + . ID=Physo129719;Parent=Physo129719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . exon 1084107 1085344 . + . ID=Physo129719.1;Parent=Physo129719;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 . CDS 1084121 1085344 . + 0 ID=Physo129719;Parent=Physo129719;rank=1 scaffold_8 . CDS 1085418 1085538 . + 0 ID=Physo129719;Parent=Physo129719;rank=2 scaffold_8 . exon 1085418 1085538 . + . ID=Physo129719.2;Parent=Physo129719;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_8 . CDS 1085610 1085693 . + 0 ID=Physo129719;Parent=Physo129719;rank=3 scaffold_8 . exon 1085610 1085693 . + . ID=Physo129719.3;Parent=Physo129719;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_8 . CDS 1085724 1085776 . + 0 ID=Physo129719;Parent=Physo129719;rank=4 scaffold_8 . exon 1085724 1085776 . + . ID=Physo129719.4;Parent=Physo129719;constitutive=1;ensembl_phase=1;rank=4 scaffold_8 . CDS 1085852 1085929 . + 0 ID=Physo129719;Parent=Physo129719;rank=5 scaffold_8 . exon 1085852 1086091 . + . ID=Physo129719.5;Parent=Physo129719;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_8 . biological_region 1093000 1093006 0.999 + . logic_name=eponine scaffold_8 . biological_region 1093073 1093074 0.999 - . logic_name=eponine scaffold_8 . biological_region 1093113 1093117 0.999 - . logic_name=eponine scaffold_8 . biological_region 1093825 1093826 0.999 - . logic_name=eponine scaffold_8 . biological_region 1093853 1093857 0.999 - . logic_name=eponine scaffold_8 . biological_region 1093855 1093861 0.999 + . logic_name=eponine scaffold_8 . biological_region 1093999 1094004 0.999 - . logic_name=eponine scaffold_8 . biological_region 1094481 1094482 0.999 - . logic_name=eponine scaffold_8 . biological_region 1094844 1094849 0.999 - . logic_name=eponine scaffold_8 . biological_region 1096204 1096205 0.999 - . logic_name=eponine scaffold_8 . biological_region 1096311 1096313 0.999 - . logic_name=eponine scaffold_8 . biological_region 1096364 1096367 0.999 - . logic_name=eponine scaffold_8 . biological_region 1096492 1096497 0.999 + . logic_name=eponine scaffold_8 . biological_region 1096604 1096605 0.999 - . logic_name=eponine scaffold_8 . biological_region 1098967 1098969 0.999 + . logic_name=eponine scaffold_8 . biological_region 1099079 1099086 0.999 + . logic_name=eponine scaffold_8 . biological_region 1099439 1099447 0.999 + . logic_name=eponine scaffold_8 . biological_region 1099565 1099570 0.999 + . logic_name=eponine scaffold_8 . biological_region 1099576 1099584 0.999 + . logic_name=eponine scaffold_8 . biological_region 1099700 1099702 0.999 + . logic_name=eponine scaffold_8 . biological_region 1099714 1099715 0.999 + . logic_name=eponine scaffold_8 . biological_region 1099781 1099785 0.999 - . logic_name=eponine scaffold_8 ensembl protein_coding_gene 1093397 1095664 . + . ID=Physo129721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80232;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1093397 1095664 . + . ID=Physo129721;Parent=Physo129721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1093397 1093474 . + 0 ID=Physo129721;Parent=Physo129721;rank=1 scaffold_8 . exon 1093397 1093474 . + . ID=Physo129721.1;Parent=Physo129721;constitutive=1;rank=1 scaffold_8 . CDS 1093551 1094065 . + 0 ID=Physo129721;Parent=Physo129721;rank=2 scaffold_8 . exon 1093551 1094065 . + . ID=Physo129721.2;Parent=Physo129721;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_8 . CDS 1094087 1094126 . + 0 ID=Physo129721;Parent=Physo129721;rank=3 scaffold_8 . exon 1094087 1094126 . + . ID=Physo129721.3;Parent=Physo129721;constitutive=1;ensembl_phase=2;rank=3 scaffold_8 . CDS 1094338 1094499 . + 0 ID=Physo129721;Parent=Physo129721;rank=4 scaffold_8 . exon 1094338 1094499 . + . ID=Physo129721.4;Parent=Physo129721;constitutive=1;rank=4 scaffold_8 . CDS 1094577 1094672 . + 0 ID=Physo129721;Parent=Physo129721;rank=5 scaffold_8 . exon 1094577 1094672 . + . ID=Physo129721.5;Parent=Physo129721;constitutive=1;rank=5 scaffold_8 . CDS 1094750 1095631 . + 0 ID=Physo129721;Parent=Physo129721;rank=6 scaffold_8 . exon 1094750 1095664 . + . ID=Physo129721.6;Parent=Physo129721;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_8 ensembl protein_coding_gene 1095974 1096636 . - . ID=Physo129722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80233;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1095974 1096636 . - . ID=Physo129722;Parent=Physo129722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1095974 1096627 . - 0 ID=Physo129722;Parent=Physo129722;rank=1 scaffold_8 . exon 1095974 1096636 . - . ID=Physo129722.1;Parent=Physo129722;constitutive=1;ensembl_phase=-1;rank=1 scaffold_8 ensembl protein_coding_gene 1097244 1099983 . - . ID=Physo129723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_80234;logic_name=jgi_physo1_1 scaffold_8 ensembl transcript 1097244 1099983 . - . ID=Physo129723;Parent=Physo129723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_8 . CDS 1097244 1099863 . - 0 ID=Physo129723;Parent=Physo129723;rank=2 scaffold_8 . exon 1097244 1099863 . - . ID=Physo129723.2;Parent=Physo129723;constitutive=1;ensembl_phase=2;rank=2 scaffold_8 . CDS 1099961 1099983 . - 0 ID=Physo129723;Parent=Physo129723;rank=1 scaffold_8 . exon 1099961 1099983 . - . ID=Physo129723.1;Parent=Physo129723;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_8 . repeat_region 1102695 1102712 . ? . description=dust scaffold_8 . repeat_region 1105120 1105222 . ? . description=trf scaffold_8 ensembl tRNA_gene 1111701 1111782 . - . ID=EPrPSOG00000000043;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_8 ensembl transcript 1111701 1111782 . - . ID=EPrPSOT00000000043;Parent=EPrPSOG00000000043;biotype=tRNA;logic_name=ncrna_eg scaffold_8 ensembl tRNA_gene 1110207 1110288 . - . ID=EPrPSOG00000000167;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_8 ensembl transcript 1110207 1110288 . - . ID=EPrPSOT00000000167;Parent=EPrPSOG00000000167;biotype=tRNA;logic_name=ncrna_eg scaffold_8 ensembl tRNA_gene 1110954 1111035 . - . ID=EPrPSOG00000000296;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_8 ensembl transcript 1110954 1111035 . - . ID=EPrPSOT00000000296;Parent=EPrPSOG00000000296;biotype=tRNA;logic_name=ncrna_eg scaffold_8 . exon 1111701 1111782 . - . ID=EPrPSOE00000000043;Parent=EPrPSOT00000000043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . exon 1110207 1110288 . - . ID=EPrPSOE00000000167;Parent=EPrPSOT00000000167;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_8 . exon 1110954 1111035 . - . ID=EPrPSOE00000000296;Parent=EPrPSOT00000000296;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_7 1 1126743 scaffold_7 . repeat_region 1510 1559 . ? . description=dust scaffold_7 . repeat_region 1716 3126 . - . description=Polinton-1_PI scaffold_7 . repeat_region 3280 3525 . - . description=Polinton-1_PI scaffold_7 . repeat_region 4109 5701 . ? . description=dust scaffold_7 . repeat_region 6913 6938 . ? . description=dust scaffold_7 . repeat_region 7052 8263 . ? . description=dust scaffold_7 . repeat_region 9465 21191 . ? . description=dust scaffold_7 . repeat_region 9465 21191 . ? . description=dust scaffold_7 . repeat_region 21199 22888 . - . description=Polinton-1_PI scaffold_7 . repeat_region 24163 25855 . - . description=Polinton-1_PI scaffold_7 . repeat_region 25894 25959 . ? . description=trf scaffold_7 . biological_region 26108 26113 0.999 + . logic_name=eponine scaffold_7 . biological_region 26315 26315 0.999 - . logic_name=eponine scaffold_7 . biological_region 26951 26954 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 22489 23509 . - . ID=Physo129176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70001;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 22489 23509 . - . ID=Physo129176;Parent=Physo129176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 22489 22541 . - 0 ID=Physo129176;Parent=Physo129176;rank=3 scaffold_7 . exon 22489 22541 . - . ID=Physo129176.3;Parent=Physo129176;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 22586 22823 . - 0 ID=Physo129176;Parent=Physo129176;rank=2 scaffold_7 . exon 22586 22823 . - . ID=Physo129176.2;Parent=Physo129176;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 23288 23509 . - 0 ID=Physo129176;Parent=Physo129176;rank=1 scaffold_7 . exon 23288 23509 . - . ID=Physo129176.1;Parent=Physo129176;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 26036 28285 . + . ID=Physo155672;biotype=protein_coding;external_name=C_scaffold_7000001;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 26036 28285 . + . ID=Physo155672;Parent=Physo155672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 26036 26307 . + 0 ID=Physo155672;Parent=Physo155672;rank=1 scaffold_7 . exon 26036 26307 . + . ID=Physo155672.1;Parent=Physo155672;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 26332 26575 . + 0 ID=Physo155672;Parent=Physo155672;rank=2 scaffold_7 . exon 26332 26575 . + . ID=Physo155672.2;Parent=Physo155672;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 26625 27357 . + 0 ID=Physo155672;Parent=Physo155672;rank=3 scaffold_7 . exon 26625 27357 . + . ID=Physo155672.3;Parent=Physo155672;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 27454 27545 . + 0 ID=Physo155672;Parent=Physo155672;rank=4 scaffold_7 . exon 27454 27545 . + . ID=Physo155672.4;Parent=Physo155672;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 27654 27894 . + 0 ID=Physo155672;Parent=Physo155672;rank=5 scaffold_7 . exon 27654 27894 . + . ID=Physo155672.5;Parent=Physo155672;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_7 . CDS 28018 28247 . + 0 ID=Physo155672;Parent=Physo155672;rank=6 scaffold_7 . exon 28018 28247 . + . ID=Physo155672.6;Parent=Physo155672;constitutive=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 28283 28285 . + 0 ID=Physo155672;Parent=Physo155672;rank=7 scaffold_7 . exon 28283 28285 . + . ID=Physo155672.7;Parent=Physo155672;constitutive=1;rank=7 scaffold_7 ensembl protein_coding_gene 33517 34786 . + . ID=Physo129179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70004;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 33517 34786 . + . ID=Physo129179;Parent=Physo129179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 33517 34735 . + 0 ID=Physo129179;Parent=Physo129179;rank=1 scaffold_7 . exon 33517 34735 . + . ID=Physo129179.1;Parent=Physo129179;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 34755 34786 . + 0 ID=Physo129179;Parent=Physo129179;rank=2 scaffold_7 . exon 34755 34786 . + . ID=Physo129179.2;Parent=Physo129179;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 ensembl protein_coding_gene 31726 33051 . - . ID=Physo155673;biotype=protein_coding;external_name=C_scaffold_7000002;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 31726 33051 . - . ID=Physo155673;Parent=Physo155673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 31726 31812 . - 0 ID=Physo155673;Parent=Physo155673;rank=4 scaffold_7 . exon 31726 31812 . - . ID=Physo155673.4;Parent=Physo155673;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 32291 32493 . - 0 ID=Physo155673;Parent=Physo155673;rank=3 scaffold_7 . exon 32291 32493 . - . ID=Physo155673.3;Parent=Physo155673;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 32567 32641 . - 0 ID=Physo155673;Parent=Physo155673;rank=2 scaffold_7 . exon 32567 32641 . - . ID=Physo155673.2;Parent=Physo155673;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 32705 33051 . - 0 ID=Physo155673;Parent=Physo155673;rank=1 scaffold_7 . exon 32705 33051 . - . ID=Physo155673.1;Parent=Physo155673;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . biological_region 40212 40216 0.999 - . logic_name=eponine scaffold_7 . repeat_region 43792 43843 . ? . description=trf scaffold_7 . repeat_region 44348 44357 . ? . description=dust scaffold_7 . repeat_region 45575 45607 . ? . description=trf scaffold_7 . repeat_region 46137 46145 . ? . description=dust scaffold_7 . biological_region 46965 46968 0.999 - . logic_name=eponine scaffold_7 . biological_region 49185 49189 0.999 - . logic_name=eponine scaffold_7 . biological_region 49610 49612 0.999 + . logic_name=eponine scaffold_7 . repeat_region 49686 49710 . ? . description=trf scaffold_7 ensembl protein_coding_gene 49096 50556 . + . ID=Physo129182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70007;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 49096 50556 . + . ID=Physo129182;Parent=Physo129182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 49096 49172 . + 0 ID=Physo129182;Parent=Physo129182;rank=1 scaffold_7 . exon 49096 49172 . + . ID=Physo129182.1;Parent=Physo129182;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 49259 49375 . + 0 ID=Physo129182;Parent=Physo129182;rank=2 scaffold_7 . exon 49259 49375 . + . ID=Physo129182.2;Parent=Physo129182;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 49463 49505 . + 0 ID=Physo129182;Parent=Physo129182;rank=3 scaffold_7 . exon 49463 49505 . + . ID=Physo129182.3;Parent=Physo129182;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 49588 49961 . + 0 ID=Physo129182;Parent=Physo129182;rank=4 scaffold_7 . exon 49588 49961 . + . ID=Physo129182.4;Parent=Physo129182;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . CDS 50040 50295 . + 0 ID=Physo129182;Parent=Physo129182;rank=5 scaffold_7 . CDS 50365 50556 . + 0 ID=Physo129182;Parent=Physo129182;rank=6 scaffold_7 ensembl protein_coding_gene 40018 41787 . + . ID=Physo155676;biotype=protein_coding;external_name=C_scaffold_7000005;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 40018 41787 . + . ID=Physo155676;Parent=Physo155676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 40018 40098 . + 0 ID=Physo155676;Parent=Physo155676;rank=1 scaffold_7 . exon 40018 40098 . + . ID=Physo155676.1;Parent=Physo155676;constitutive=1;rank=1 scaffold_7 . CDS 40396 41787 . + 0 ID=Physo155676;Parent=Physo155676;rank=2 scaffold_7 . exon 40396 41787 . + . ID=Physo155676.2;Parent=Physo155676;constitutive=1;rank=2 scaffold_7 ensembl protein_coding_gene 41888 43759 . - . ID=Physo155677;biotype=protein_coding;external_name=C_scaffold_7000006;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 41888 43759 . - . ID=Physo155677;Parent=Physo155677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 41888 42121 . - 0 ID=Physo155677;Parent=Physo155677;rank=3 scaffold_7 . exon 41888 42121 . - . ID=Physo155677.3;Parent=Physo155677;constitutive=1;rank=3 scaffold_7 . CDS 42188 43239 . - 0 ID=Physo155677;Parent=Physo155677;rank=2 scaffold_7 . exon 42188 43239 . - . ID=Physo155677.2;Parent=Physo155677;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 43261 43759 . - 0 ID=Physo155677;Parent=Physo155677;rank=1 scaffold_7 . exon 43261 43759 . - . ID=Physo155677.1;Parent=Physo155677;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 50697 50954 . - . ID=Physo108356;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70001;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 50697 50954 . - . ID=Physo108356;Parent=Physo108356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 50697 50954 . - 0 ID=Physo108356;Parent=Physo108356;rank=1 scaffold_7 . exon 50697 50954 . - . ID=Physo108356.1;Parent=Physo108356;constitutive=1;rank=1 scaffold_7 . exon 50040 50295 . + . ID=Physo129182.5;Parent=Physo129182;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . exon 50365 50556 . + . ID=Physo129182.6;Parent=Physo129182;constitutive=1;rank=6 scaffold_7 ensembl protein_coding_gene 51087 53834 . + . ID=Physo129184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70009;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 51087 53834 . + . ID=Physo129184;Parent=Physo129184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 51087 53834 . + 0 ID=Physo129184;Parent=Physo129184;rank=1 scaffold_7 . exon 51087 53834 . + . ID=Physo129184.1;Parent=Physo129184;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 53904 55859 . - . ID=Physo129185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70010;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 53904 55859 . - . ID=Physo129185;Parent=Physo129185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 53904 54672 . - 0 ID=Physo129185;Parent=Physo129185;rank=3 scaffold_7 . exon 53904 54672 . - . ID=Physo129185.3;Parent=Physo129185;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 54756 55627 . - 0 ID=Physo129185;Parent=Physo129185;rank=2 scaffold_7 . exon 54756 55627 . - . ID=Physo129185.2;Parent=Physo129185;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 55713 55859 . - 0 ID=Physo129185;Parent=Physo129185;rank=1 scaffold_7 . exon 55713 55859 . - . ID=Physo129185.1;Parent=Physo129185;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 56088 58781 . - . ID=Physo129186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70011;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 56088 58781 . - . ID=Physo129186;Parent=Physo129186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 56088 58781 . - 0 ID=Physo129186;Parent=Physo129186;rank=1 scaffold_7 . exon 56088 58781 . - . ID=Physo129186.1;Parent=Physo129186;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 59187 61314 . - . ID=Physo155681;biotype=protein_coding;external_name=C_scaffold_7000010;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 59187 61314 . - . ID=Physo155681;Parent=Physo155681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 59187 59297 . - 0 ID=Physo155681;Parent=Physo155681;rank=6 scaffold_7 . exon 59187 59297 . - . ID=Physo155681.6;Parent=Physo155681;constitutive=1;rank=6 scaffold_7 . CDS 59325 60050 . - 0 ID=Physo155681;Parent=Physo155681;rank=5 scaffold_7 . exon 59325 60050 . - . ID=Physo155681.5;Parent=Physo155681;constitutive=1;rank=5 scaffold_7 . CDS 60136 60273 . - 0 ID=Physo155681;Parent=Physo155681;rank=4 scaffold_7 . CDS 60391 60629 . - 0 ID=Physo155681;Parent=Physo155681;rank=3 scaffold_7 . CDS 60822 61088 . - 0 ID=Physo155681;Parent=Physo155681;rank=2 scaffold_7 . CDS 61122 61314 . - 0 ID=Physo155681;Parent=Physo155681;rank=1 scaffold_7 . biological_region 63445 63445 0.999 + . logic_name=eponine scaffold_7 . biological_region 64040 64044 0.999 - . logic_name=eponine scaffold_7 . biological_region 64246 64247 0.999 + . logic_name=eponine scaffold_7 . repeat_region 66124 66204 . ? . description=trf scaffold_7 . biological_region 66370 66370 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 66212 67051 . + . ID=Physo108357;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70002;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 66212 67051 . + . ID=Physo108357;Parent=Physo108357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 66212 66675 . + 0 ID=Physo108357;Parent=Physo108357;rank=1 scaffold_7 . exon 66212 66675 . + . ID=Physo108357.1;Parent=Physo108357;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 66748 67051 . + 0 ID=Physo108357;Parent=Physo108357;rank=2 scaffold_7 . exon 66748 67051 . + . ID=Physo108357.2;Parent=Physo108357;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 ensembl protein_coding_gene 61856 63564 . - . ID=Physo129188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70013;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 61856 63564 . - . ID=Physo129188;Parent=Physo129188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 61856 63244 . - 0 ID=Physo129188;Parent=Physo129188;rank=2 scaffold_7 . exon 61856 63244 . - . ID=Physo129188.2;Parent=Physo129188;constitutive=1;rank=2 scaffold_7 . CDS 63328 63564 . - 0 ID=Physo129188;Parent=Physo129188;rank=1 scaffold_7 . exon 63328 63564 . - . ID=Physo129188.1;Parent=Physo129188;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 63939 64588 . + . ID=Physo129189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70014;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 63939 64588 . + . ID=Physo129189;Parent=Physo129189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 63939 64588 . + . ID=Physo129189.1;Parent=Physo129189;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 63983 64471 . + 0 ID=Physo129189;Parent=Physo129189;rank=1 scaffold_7 ensembl protein_coding_gene 64619 66046 . - . ID=Physo129190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70015;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 64619 66046 . - . ID=Physo129190;Parent=Physo129190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 64619 65291 . - 0 ID=Physo129190;Parent=Physo129190;rank=4 scaffold_7 . exon 64619 65291 . - . ID=Physo129190.4;Parent=Physo129190;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 65376 65416 . - 0 ID=Physo129190;Parent=Physo129190;rank=3 scaffold_7 . exon 65376 65416 . - . ID=Physo129190.3;Parent=Physo129190;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_7 . CDS 65490 65535 . - 0 ID=Physo129190;Parent=Physo129190;rank=2 scaffold_7 . exon 65490 65535 . - . ID=Physo129190.2;Parent=Physo129190;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 65613 66046 . - 0 ID=Physo129190;Parent=Physo129190;rank=1 scaffold_7 . exon 65613 66046 . - . ID=Physo129190.1;Parent=Physo129190;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 67223 70431 . + . ID=Physo129192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70017;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 67223 70431 . + . ID=Physo129192;Parent=Physo129192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 67223 67474 . + 0 ID=Physo129192;Parent=Physo129192;rank=1 scaffold_7 . exon 67223 67474 . + . ID=Physo129192.1;Parent=Physo129192;constitutive=1;rank=1 scaffold_7 . CDS 67559 67591 . + 0 ID=Physo129192;Parent=Physo129192;rank=2 scaffold_7 . exon 67559 67591 . + . ID=Physo129192.2;Parent=Physo129192;constitutive=1;rank=2 scaffold_7 . CDS 67663 67706 . + 0 ID=Physo129192;Parent=Physo129192;rank=3 scaffold_7 . exon 67663 67706 . + . ID=Physo129192.3;Parent=Physo129192;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_7 . CDS 67787 67835 . + 0 ID=Physo129192;Parent=Physo129192;rank=4 scaffold_7 . exon 67787 67835 . + . ID=Physo129192.4;Parent=Physo129192;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 67915 68176 . + 0 ID=Physo129192;Parent=Physo129192;rank=5 scaffold_7 . exon 67915 68176 . + . ID=Physo129192.5;Parent=Physo129192;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_7 . CDS 68253 68953 . + 0 ID=Physo129192;Parent=Physo129192;rank=6 scaffold_7 . exon 68253 68953 . + . ID=Physo129192.6;Parent=Physo129192;constitutive=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 69025 69104 . + 0 ID=Physo129192;Parent=Physo129192;rank=7 scaffold_7 . exon 69025 69104 . + . ID=Physo129192.7;Parent=Physo129192;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_7 . CDS 69176 69508 . + 0 ID=Physo129192;Parent=Physo129192;rank=8 scaffold_7 . exon 69176 69508 . + . ID=Physo129192.8;Parent=Physo129192;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_7 . CDS 69565 69565 . + 0 ID=Physo129192;Parent=Physo129192;rank=9 scaffold_7 . exon 69565 69565 . + . ID=Physo129192.9;Parent=Physo129192;constitutive=1;ensembl_phase=2;rank=9 scaffold_7 . CDS 69671 70402 . + 0 ID=Physo129192;Parent=Physo129192;rank=10 scaffold_7 . exon 69671 70431 . + . ID=Physo129192.10;Parent=Physo129192;constitutive=1;ensembl_end_phase=-1;rank=10 scaffold_7 . exon 60136 60273 . - . ID=Physo155681.4;Parent=Physo155681;constitutive=1;rank=4 scaffold_7 . exon 60391 60629 . - . ID=Physo155681.3;Parent=Physo155681;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . exon 60822 61088 . - . ID=Physo155681.2;Parent=Physo155681;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . exon 61122 61314 . - . ID=Physo155681.1;Parent=Physo155681;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . repeat_region 74017 74024 . ? . description=dust scaffold_7 . repeat_region 74728 74736 . ? . description=dust scaffold_7 ensembl protein_coding_gene 70497 73775 . - . ID=Physo129193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70018;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 70497 73775 . - . ID=Physo129193;Parent=Physo129193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 70497 70669 . - . ID=Physo129193.4;Parent=Physo129193;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_7 . CDS 70592 70669 . - 0 ID=Physo129193;Parent=Physo129193;rank=4 scaffold_7 . CDS 70741 70800 . - 0 ID=Physo129193;Parent=Physo129193;rank=3 scaffold_7 . exon 70741 70800 . - . ID=Physo129193.3;Parent=Physo129193;constitutive=1;rank=3 scaffold_7 . CDS 70877 72764 . - 0 ID=Physo129193;Parent=Physo129193;rank=2 scaffold_7 . exon 70877 72764 . - . ID=Physo129193.2;Parent=Physo129193;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 72855 73651 . - 0 ID=Physo129193;Parent=Physo129193;rank=1 scaffold_7 . exon 72855 73775 . - . ID=Physo129193.1;Parent=Physo129193;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 74751 76035 . + . ID=Physo129194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70019;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 74751 76035 . + . ID=Physo129194;Parent=Physo129194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 74751 75032 . + 0 ID=Physo129194;Parent=Physo129194;rank=1 scaffold_7 . exon 74751 75032 . + . ID=Physo129194.1;Parent=Physo129194;constitutive=1;rank=1 scaffold_7 . CDS 75108 75184 . + 0 ID=Physo129194;Parent=Physo129194;rank=2 scaffold_7 . exon 75108 75184 . + . ID=Physo129194.2;Parent=Physo129194;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 75262 75867 . + 0 ID=Physo129194;Parent=Physo129194;rank=3 scaffold_7 . exon 75262 75867 . + . ID=Physo129194.3;Parent=Physo129194;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_7 . CDS 75990 76035 . + 0 ID=Physo129194;Parent=Physo129194;rank=4 scaffold_7 . exon 75990 76035 . + . ID=Physo129194.4;Parent=Physo129194;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 ensembl protein_coding_gene 76065 76532 . - . ID=Physo129195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70020;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 76065 76532 . - . ID=Physo129195;Parent=Physo129195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 76065 76532 . - 0 ID=Physo129195;Parent=Physo129195;rank=1 scaffold_7 . exon 76065 76532 . - . ID=Physo129195.1;Parent=Physo129195;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 76735 78978 . - . ID=Physo129196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70021;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 76735 78978 . - . ID=Physo129196;Parent=Physo129196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 76735 78476 . - . ID=Physo129196.3;Parent=Physo129196;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_7 . CDS 76816 78476 . - 0 ID=Physo129196;Parent=Physo129196;rank=3 scaffold_7 . CDS 78676 78795 . - 0 ID=Physo129196;Parent=Physo129196;rank=2 scaffold_7 . exon 78676 78795 . - . ID=Physo129196.2;Parent=Physo129196;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 78870 78978 . - 0 ID=Physo129196;Parent=Physo129196;rank=1 scaffold_7 . exon 78870 78978 . - . ID=Physo129196.1;Parent=Physo129196;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 80319 86094 . + . ID=Physo155682;biotype=protein_coding;external_name=C_scaffold_7000011;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 80319 86094 . + . ID=Physo155682;Parent=Physo155682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 80319 80374 . + 0 ID=Physo155682;Parent=Physo155682;rank=1 scaffold_7 . exon 80319 80374 . + . ID=Physo155682.1;Parent=Physo155682;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 80440 80718 . + 0 ID=Physo155682;Parent=Physo155682;rank=2 scaffold_7 . exon 80440 80718 . + . ID=Physo155682.2;Parent=Physo155682;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 80798 81497 . + 0 ID=Physo155682;Parent=Physo155682;rank=3 scaffold_7 . exon 80798 81497 . + . ID=Physo155682.3;Parent=Physo155682;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 81594 81913 . + 0 ID=Physo155682;Parent=Physo155682;rank=4 scaffold_7 . exon 81594 81913 . + . ID=Physo155682.4;Parent=Physo155682;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . CDS 82022 82134 . + 0 ID=Physo155682;Parent=Physo155682;rank=5 scaffold_7 . exon 82022 82134 . + . ID=Physo155682.5;Parent=Physo155682;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 82210 84335 . + 0 ID=Physo155682;Parent=Physo155682;rank=6 scaffold_7 . exon 82210 84335 . + . ID=Physo155682.6;Parent=Physo155682;constitutive=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 84636 84828 . + 0 ID=Physo155682;Parent=Physo155682;rank=7 scaffold_7 . exon 84636 84828 . + . ID=Physo155682.7;Parent=Physo155682;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_7 . CDS 84901 85138 . + 0 ID=Physo155682;Parent=Physo155682;rank=8 scaffold_7 . exon 84901 85138 . + . ID=Physo155682.8;Parent=Physo155682;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_7 . CDS 85216 85272 . + 0 ID=Physo155682;Parent=Physo155682;rank=9 scaffold_7 . exon 85216 85272 . + . ID=Physo155682.9;Parent=Physo155682;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_7 . CDS 85345 85590 . + 0 ID=Physo155682;Parent=Physo155682;rank=10 scaffold_7 . exon 85345 85590 . + . ID=Physo155682.10;Parent=Physo155682;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_7 . CDS 85668 85807 . + 0 ID=Physo155682;Parent=Physo155682;rank=11 scaffold_7 . exon 85668 85807 . + . ID=Physo155682.11;Parent=Physo155682;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_7 . CDS 85871 86094 . + 0 ID=Physo155682;Parent=Physo155682;rank=12 scaffold_7 . exon 85871 86094 . + . ID=Physo155682.12;Parent=Physo155682;constitutive=1;ensembl_phase=1;rank=12 scaffold_7 . biological_region 90755 90760 0.999 + . logic_name=eponine scaffold_7 . biological_region 90766 90771 0.999 - . logic_name=eponine scaffold_7 . biological_region 90794 90798 0.999 - . logic_name=eponine scaffold_7 . repeat_region 91071 91090 . ? . description=trf scaffold_7 . repeat_region 96733 96771 . ? . description=dust scaffold_7 . repeat_region 96733 96771 . ? . description=trf scaffold_7 ensembl protein_coding_gene 90138 91154 . - . ID=Physo129198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70023;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 90138 91154 . - . ID=Physo129198;Parent=Physo129198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 90138 91154 . - 0 ID=Physo129198;Parent=Physo129198;rank=1 scaffold_7 . exon 90138 91154 . - . ID=Physo129198.1;Parent=Physo129198;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 91765 93395 . - . ID=Physo129199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70024;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 91765 93395 . - . ID=Physo129199;Parent=Physo129199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 91765 91929 . - 0 ID=Physo129199;Parent=Physo129199;rank=5 scaffold_7 . exon 91765 91929 . - . ID=Physo129199.5;Parent=Physo129199;constitutive=1;rank=5 scaffold_7 . CDS 92086 92643 . - 0 ID=Physo129199;Parent=Physo129199;rank=4 scaffold_7 . exon 92086 92643 . - . ID=Physo129199.4;Parent=Physo129199;constitutive=1;rank=4 scaffold_7 . CDS 92727 92909 . - 0 ID=Physo129199;Parent=Physo129199;rank=3 scaffold_7 . exon 92727 92909 . - . ID=Physo129199.3;Parent=Physo129199;constitutive=1;rank=3 scaffold_7 . CDS 93083 93148 . - 0 ID=Physo129199;Parent=Physo129199;rank=2 scaffold_7 . exon 93083 93148 . - . ID=Physo129199.2;Parent=Physo129199;constitutive=1;rank=2 scaffold_7 . CDS 93219 93395 . - 0 ID=Physo129199;Parent=Physo129199;rank=1 scaffold_7 . exon 93219 93395 . - . ID=Physo129199.1;Parent=Physo129199;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 94332 96932 . + . ID=Physo129200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70025;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 94332 96932 . + . ID=Physo129200;Parent=Physo129200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 94332 94488 . + 0 ID=Physo129200;Parent=Physo129200;rank=1 scaffold_7 . exon 94332 94488 . + . ID=Physo129200.1;Parent=Physo129200;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 94537 94683 . + 0 ID=Physo129200;Parent=Physo129200;rank=2 scaffold_7 . exon 94537 94683 . + . ID=Physo129200.2;Parent=Physo129200;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 95158 95512 . + 0 ID=Physo129200;Parent=Physo129200;rank=3 scaffold_7 . exon 95158 95512 . + . ID=Physo129200.3;Parent=Physo129200;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_7 . CDS 95651 96003 . + 0 ID=Physo129200;Parent=Physo129200;rank=4 scaffold_7 . exon 95651 96003 . + . ID=Physo129200.4;Parent=Physo129200;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 96268 96932 . + 0 ID=Physo129200;Parent=Physo129200;rank=5 scaffold_7 . exon 96268 96932 . + . ID=Physo129200.5;Parent=Physo129200;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 ensembl protein_coding_gene 99307 100583 . + . ID=Physo155683;biotype=protein_coding;external_name=C_scaffold_7000012;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 99307 100583 . + . ID=Physo155683;Parent=Physo155683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 99307 99486 . + 0 ID=Physo155683;Parent=Physo155683;rank=1 scaffold_7 . exon 99307 99486 . + . ID=Physo155683.1;Parent=Physo155683;constitutive=1;rank=1 scaffold_7 . CDS 99897 100136 . + 0 ID=Physo155683;Parent=Physo155683;rank=2 scaffold_7 . CDS 100254 100583 . + 0 ID=Physo155683;Parent=Physo155683;rank=3 scaffold_7 ensembl protein_coding_gene 105352 106786 . - . ID=Physo129202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70027;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 105352 106786 . - . ID=Physo129202;Parent=Physo129202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 105352 105375 . - 0 ID=Physo129202;Parent=Physo129202;rank=2 scaffold_7 . exon 105352 105375 . - . ID=Physo129202.2;Parent=Physo129202;constitutive=1;rank=2 scaffold_7 . CDS 105461 106786 . - 0 ID=Physo129202;Parent=Physo129202;rank=1 scaffold_7 . exon 105461 106786 . - . ID=Physo129202.1;Parent=Physo129202;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 107899 108558 . + . ID=Physo129203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70028;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 107899 108558 . + . ID=Physo129203;Parent=Physo129203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 107899 108558 . + 0 ID=Physo129203;Parent=Physo129203;rank=1 scaffold_7 . exon 107899 108558 . + . ID=Physo129203.1;Parent=Physo129203;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 109089 110933 . - . ID=Physo129204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70029;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 109089 110933 . - . ID=Physo129204;Parent=Physo129204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 109089 109226 . - 0 ID=Physo129204;Parent=Physo129204;rank=4 scaffold_7 . exon 109089 109226 . - . ID=Physo129204.4;Parent=Physo129204;constitutive=1;rank=4 scaffold_7 . CDS 109342 109368 . - 0 ID=Physo129204;Parent=Physo129204;rank=3 scaffold_7 . exon 109342 109368 . - . ID=Physo129204.3;Parent=Physo129204;constitutive=1;rank=3 scaffold_7 . CDS 109498 110250 . - 0 ID=Physo129204;Parent=Physo129204;rank=2 scaffold_7 . exon 109498 110250 . - . ID=Physo129204.2;Parent=Physo129204;constitutive=1;rank=2 scaffold_7 . CDS 110325 110933 . - 0 ID=Physo129204;Parent=Physo129204;rank=1 scaffold_7 . exon 99897 100136 . + . ID=Physo155683.2;Parent=Physo155683;constitutive=1;rank=2 scaffold_7 . exon 100254 100583 . + . ID=Physo155683.3;Parent=Physo155683;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 100923 103183 . - . ID=Physo155684;biotype=protein_coding;external_name=C_scaffold_7000013;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 100923 103183 . - . ID=Physo155684;Parent=Physo155684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 100923 101219 . - 0 ID=Physo155684;Parent=Physo155684;rank=8 scaffold_7 . exon 100923 101219 . - . ID=Physo155684.8;Parent=Physo155684;constitutive=1;rank=8 scaffold_7 . CDS 101282 101352 . - 0 ID=Physo155684;Parent=Physo155684;rank=7 scaffold_7 . exon 101282 101352 . - . ID=Physo155684.7;Parent=Physo155684;constitutive=1;ensembl_phase=1;rank=7 scaffold_7 . CDS 101418 101539 . - 0 ID=Physo155684;Parent=Physo155684;rank=6 scaffold_7 . exon 101418 101539 . - . ID=Physo155684.6;Parent=Physo155684;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_7 . CDS 101637 101769 . - 0 ID=Physo155684;Parent=Physo155684;rank=5 scaffold_7 . exon 101637 101769 . - . ID=Physo155684.5;Parent=Physo155684;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_7 . CDS 101845 101917 . - 0 ID=Physo155684;Parent=Physo155684;rank=4 scaffold_7 . exon 101845 101917 . - . ID=Physo155684.4;Parent=Physo155684;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_7 . CDS 102269 102389 . - 0 ID=Physo155684;Parent=Physo155684;rank=3 scaffold_7 . exon 102269 102389 . - . ID=Physo155684.3;Parent=Physo155684;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 102461 102522 . - 0 ID=Physo155684;Parent=Physo155684;rank=2 scaffold_7 . exon 102461 102522 . - . ID=Physo155684.2;Parent=Physo155684;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 102926 103183 . - 0 ID=Physo155684;Parent=Physo155684;rank=1 scaffold_7 . exon 102926 103183 . - . ID=Physo155684.1;Parent=Physo155684;constitutive=1;rank=1 scaffold_7 . biological_region 110382 110382 0.999 + . logic_name=eponine scaffold_7 . biological_region 110736 110741 0.999 + . logic_name=eponine scaffold_7 . biological_region 110790 110792 0.999 - . logic_name=eponine scaffold_7 . biological_region 110820 110821 0.999 - . logic_name=eponine scaffold_7 . biological_region 110906 110908 0.999 - . logic_name=eponine scaffold_7 . biological_region 111584 111589 0.999 + . logic_name=eponine scaffold_7 . repeat_region 111592 111639 . ? . description=trf scaffold_7 . exon 110325 110933 . - . ID=Physo129204.1;Parent=Physo129204;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 111131 112552 . + . ID=Physo129205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70030;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 111131 112552 . + . ID=Physo129205;Parent=Physo129205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 111131 112552 . + 0 ID=Physo129205;Parent=Physo129205;rank=1 scaffold_7 . exon 111131 112552 . + . ID=Physo129205.1;Parent=Physo129205;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 114451 115598 . - . ID=Physo129206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70031;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 114451 115598 . - . ID=Physo129206;Parent=Physo129206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 114451 115015 . - 0 ID=Physo129206;Parent=Physo129206;rank=4 scaffold_7 . exon 114451 115015 . - . ID=Physo129206.4;Parent=Physo129206;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 115068 115137 . - 0 ID=Physo129206;Parent=Physo129206;rank=3 scaffold_7 . exon 115068 115137 . - . ID=Physo129206.3;Parent=Physo129206;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_7 . CDS 115216 115436 . - 0 ID=Physo129206;Parent=Physo129206;rank=2 scaffold_7 . exon 115216 115436 . - . ID=Physo129206.2;Parent=Physo129206;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 115567 115598 . - 0 ID=Physo129206;Parent=Physo129206;rank=1 scaffold_7 . exon 115567 115598 . - . ID=Physo129206.1;Parent=Physo129206;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 124674 126160 . + . ID=Physo108358;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70003;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 124674 126160 . + . ID=Physo108358;Parent=Physo108358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 124674 124711 . + . ID=Physo108358.1;Parent=Physo108358;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 . CDS 124689 124711 . + 0 ID=Physo108358;Parent=Physo108358;rank=1 scaffold_7 . CDS 125230 125383 . + 0 ID=Physo108358;Parent=Physo108358;rank=2 scaffold_7 . exon 125230 125383 . + . ID=Physo108358.2;Parent=Physo108358;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 125464 126021 . + 0 ID=Physo108358;Parent=Physo108358;rank=3 scaffold_7 . exon 125464 126160 . + . ID=Physo108358.3;Parent=Physo108358;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_7 ensembl protein_coding_gene 121147 123918 . + . ID=Physo129207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70032;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 121147 123918 . + . ID=Physo129207;Parent=Physo129207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 121147 123918 . + 0 ID=Physo129207;Parent=Physo129207;rank=1 scaffold_7 . exon 121147 123918 . + . ID=Physo129207.1;Parent=Physo129207;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 124000 124457 . - . ID=Physo129208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70033;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 124000 124457 . - . ID=Physo129208;Parent=Physo129208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 124000 124131 . - 0 ID=Physo129208;Parent=Physo129208;rank=3 scaffold_7 . exon 124000 124131 . - . ID=Physo129208.3;Parent=Physo129208;constitutive=1;rank=3 scaffold_7 . CDS 124191 124274 . - 0 ID=Physo129208;Parent=Physo129208;rank=2 scaffold_7 . exon 124191 124274 . - . ID=Physo129208.2;Parent=Physo129208;constitutive=1;rank=2 scaffold_7 . CDS 124335 124457 . - 0 ID=Physo129208;Parent=Physo129208;rank=1 scaffold_7 . exon 124335 124457 . - . ID=Physo129208.1;Parent=Physo129208;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 126209 132642 . - . ID=Physo129210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70035;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 126209 132642 . - . ID=Physo129210;Parent=Physo129210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 126209 128349 . - 0 ID=Physo129210;Parent=Physo129210;rank=6 scaffold_7 . exon 126209 128349 . - . ID=Physo129210.6;Parent=Physo129210;constitutive=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 128377 130040 . - 0 ID=Physo129210;Parent=Physo129210;rank=5 scaffold_7 . exon 128377 130040 . - . ID=Physo129210.5;Parent=Physo129210;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 130100 130818 . - 0 ID=Physo129210;Parent=Physo129210;rank=4 scaffold_7 . CDS 131449 131592 . - 0 ID=Physo129210;Parent=Physo129210;rank=3 scaffold_7 . CDS 131660 132022 . - 0 ID=Physo129210;Parent=Physo129210;rank=2 scaffold_7 . CDS 132091 132642 . - 0 ID=Physo129210;Parent=Physo129210;rank=1 scaffold_7 . biological_region 135937 135942 0.999 - . logic_name=eponine scaffold_7 . repeat_region 137076 137084 . ? . description=dust scaffold_7 . exon 130100 130818 . - . ID=Physo129210.4;Parent=Physo129210;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . exon 131449 131592 . - . ID=Physo129210.3;Parent=Physo129210;constitutive=1;rank=3 scaffold_7 . exon 131660 132022 . - . ID=Physo129210.2;Parent=Physo129210;constitutive=1;rank=2 scaffold_7 . exon 132091 132642 . - . ID=Physo129210.1;Parent=Physo129210;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 138979 145469 . - . ID=Physo129213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70038;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 138979 145469 . - . ID=Physo129213;Parent=Physo129213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 138979 143157 . - 0 ID=Physo129213;Parent=Physo129213;rank=10 scaffold_7 . exon 138979 143157 . - . ID=Physo129213.10;Parent=Physo129213;constitutive=1;rank=10 scaffold_7 . CDS 143771 143809 . - 0 ID=Physo129213;Parent=Physo129213;rank=9 scaffold_7 . CDS 143883 144005 . - 0 ID=Physo129213;Parent=Physo129213;rank=8 scaffold_7 . CDS 144099 144253 . - 0 ID=Physo129213;Parent=Physo129213;rank=7 scaffold_7 . CDS 144318 144411 . - 0 ID=Physo129213;Parent=Physo129213;rank=6 scaffold_7 . CDS 144488 144548 . - 0 ID=Physo129213;Parent=Physo129213;rank=5 scaffold_7 . CDS 144620 144675 . - 0 ID=Physo129213;Parent=Physo129213;rank=4 scaffold_7 . CDS 144752 144951 . - 0 ID=Physo129213;Parent=Physo129213;rank=3 scaffold_7 . CDS 145046 145245 . - 0 ID=Physo129213;Parent=Physo129213;rank=2 scaffold_7 . CDS 145330 145469 . - 0 ID=Physo129213;Parent=Physo129213;rank=1 scaffold_7 ensembl protein_coding_gene 133139 135404 . - . ID=Physo155691;biotype=protein_coding;external_name=C_scaffold_7000020;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 133139 135404 . - . ID=Physo155691;Parent=Physo155691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 133139 133258 . - 0 ID=Physo155691;Parent=Physo155691;rank=8 scaffold_7 . exon 133139 133258 . - . ID=Physo155691.8;Parent=Physo155691;constitutive=1;rank=8 scaffold_7 . CDS 133323 133442 . - 0 ID=Physo155691;Parent=Physo155691;rank=7 scaffold_7 . exon 133323 133442 . - . ID=Physo155691.7;Parent=Physo155691;constitutive=1;rank=7 scaffold_7 . CDS 133767 133892 . - 0 ID=Physo155691;Parent=Physo155691;rank=6 scaffold_7 . exon 133767 133892 . - . ID=Physo155691.6;Parent=Physo155691;constitutive=1;rank=6 scaffold_7 . CDS 133947 134058 . - 0 ID=Physo155691;Parent=Physo155691;rank=5 scaffold_7 . exon 133947 134058 . - . ID=Physo155691.5;Parent=Physo155691;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 134130 134478 . - 0 ID=Physo155691;Parent=Physo155691;rank=4 scaffold_7 . exon 134130 134478 . - . ID=Physo155691.4;Parent=Physo155691;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_7 . CDS 134545 134707 . - 0 ID=Physo155691;Parent=Physo155691;rank=3 scaffold_7 . exon 134545 134707 . - . ID=Physo155691.3;Parent=Physo155691;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 134772 134922 . - 0 ID=Physo155691;Parent=Physo155691;rank=2 scaffold_7 . exon 134772 134922 . - . ID=Physo155691.2;Parent=Physo155691;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 135004 135404 . - 0 ID=Physo155691;Parent=Physo155691;rank=1 scaffold_7 . exon 135004 135404 . - . ID=Physo155691.1;Parent=Physo155691;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 135840 136868 . + . ID=Physo155693;biotype=protein_coding;external_name=C_scaffold_7000022;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 135840 136868 . + . ID=Physo155693;Parent=Physo155693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 135840 135926 . + 0 ID=Physo155693;Parent=Physo155693;rank=1 scaffold_7 . exon 135840 135926 . + . ID=Physo155693.1;Parent=Physo155693;constitutive=1;rank=1 scaffold_7 . CDS 136005 136573 . + 0 ID=Physo155693;Parent=Physo155693;rank=2 scaffold_7 . exon 136005 136573 . + . ID=Physo155693.2;Parent=Physo155693;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 136652 136868 . + 0 ID=Physo155693;Parent=Physo155693;rank=3 scaffold_7 . exon 136652 136868 . + . ID=Physo155693.3;Parent=Physo155693;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . exon 143771 143809 . - . ID=Physo129213.9;Parent=Physo129213;constitutive=1;rank=9 scaffold_7 . exon 143883 144005 . - . ID=Physo129213.8;Parent=Physo129213;constitutive=1;rank=8 scaffold_7 . exon 144099 144253 . - . ID=Physo129213.7;Parent=Physo129213;constitutive=1;ensembl_phase=1;rank=7 scaffold_7 . exon 144318 144411 . - . ID=Physo129213.6;Parent=Physo129213;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_7 . exon 144488 144548 . - . ID=Physo129213.5;Parent=Physo129213;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . exon 144620 144675 . - . ID=Physo129213.4;Parent=Physo129213;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . exon 144752 144951 . - . ID=Physo129213.3;Parent=Physo129213;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . exon 145046 145245 . - . ID=Physo129213.2;Parent=Physo129213;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . exon 145330 145469 . - . ID=Physo129213.1;Parent=Physo129213;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 145695 147183 . + . ID=Physo129214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70039;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 145695 147183 . + . ID=Physo129214;Parent=Physo129214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 145695 147183 . + . ID=Physo129214.1;Parent=Physo129214;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 145753 147183 . + 0 ID=Physo129214;Parent=Physo129214;rank=1 scaffold_7 ensembl protein_coding_gene 147636 149124 . - . ID=Physo129215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70040;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 147636 149124 . - . ID=Physo129215;Parent=Physo129215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 147636 149096 . - 0 ID=Physo129215;Parent=Physo129215;rank=1 scaffold_7 . exon 147636 149124 . - . ID=Physo129215.1;Parent=Physo129215;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . biological_region 153010 153011 0.999 - . logic_name=eponine scaffold_7 . biological_region 156731 156735 0.999 - . logic_name=eponine scaffold_7 . biological_region 156920 156923 0.999 + . logic_name=eponine scaffold_7 . biological_region 156989 156992 0.999 - . logic_name=eponine scaffold_7 . biological_region 157139 157140 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 150881 152772 . + . ID=Physo129216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70041;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 150881 152772 . + . ID=Physo129216;Parent=Physo129216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 150881 151047 . + . ID=Physo129216.1;Parent=Physo129216;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 150988 151047 . + 0 ID=Physo129216;Parent=Physo129216;rank=1 scaffold_7 . CDS 151168 151275 . + 0 ID=Physo129216;Parent=Physo129216;rank=2 scaffold_7 . exon 151168 151275 . + . ID=Physo129216.2;Parent=Physo129216;constitutive=1;rank=2 scaffold_7 . CDS 151428 151985 . + 0 ID=Physo129216;Parent=Physo129216;rank=3 scaffold_7 . exon 151428 151985 . + . ID=Physo129216.3;Parent=Physo129216;constitutive=1;rank=3 scaffold_7 . CDS 152056 152135 . + 0 ID=Physo129216;Parent=Physo129216;rank=4 scaffold_7 . exon 152056 152135 . + . ID=Physo129216.4;Parent=Physo129216;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . CDS 152203 152343 . + 0 ID=Physo129216;Parent=Physo129216;rank=5 scaffold_7 . exon 152203 152343 . + . ID=Physo129216.5;Parent=Physo129216;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_7 . CDS 152413 152599 . + 0 ID=Physo129216;Parent=Physo129216;rank=6 scaffold_7 . exon 152413 152772 . + . ID=Physo129216.6;Parent=Physo129216;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_7 ensembl protein_coding_gene 157681 159394 . + . ID=Physo129218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70043;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 157681 159394 . + . ID=Physo129218;Parent=Physo129218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 157681 157802 . + 0 ID=Physo129218;Parent=Physo129218;rank=1 scaffold_7 . exon 157681 157802 . + . ID=Physo129218.1;Parent=Physo129218;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 157872 157912 . + 0 ID=Physo129218;Parent=Physo129218;rank=2 scaffold_7 . exon 157872 157912 . + . ID=Physo129218.2;Parent=Physo129218;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 158158 158867 . + 0 ID=Physo129218;Parent=Physo129218;rank=3 scaffold_7 . exon 158158 158867 . + . ID=Physo129218.3;Parent=Physo129218;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 158939 159394 . + 0 ID=Physo129218;Parent=Physo129218;rank=4 scaffold_7 . exon 158939 159394 . + . ID=Physo129218.4;Parent=Physo129218;constitutive=1;rank=4 scaffold_7 ensembl protein_coding_gene 159470 162055 . - . ID=Physo129219;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70044;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 159470 162055 . - . ID=Physo129219;Parent=Physo129219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 159470 159510 . - 0 ID=Physo129219;Parent=Physo129219;rank=6 scaffold_7 . exon 159470 159510 . - . ID=Physo129219.6;Parent=Physo129219;constitutive=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 159646 160339 . - 0 ID=Physo129219;Parent=Physo129219;rank=5 scaffold_7 . CDS 160431 160500 . - 0 ID=Physo129219;Parent=Physo129219;rank=4 scaffold_7 . CDS 160566 160614 . - 0 ID=Physo129219;Parent=Physo129219;rank=3 scaffold_7 . CDS 160813 160825 . - 0 ID=Physo129219;Parent=Physo129219;rank=2 scaffold_7 . CDS 160871 162055 . - 0 ID=Physo129219;Parent=Physo129219;rank=1 scaffold_7 ensembl protein_coding_gene 153035 156572 . - . ID=Physo155697;biotype=protein_coding;external_name=C_scaffold_7000026;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 153035 156572 . - . ID=Physo155697;Parent=Physo155697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 153035 153431 . - 0 ID=Physo155697;Parent=Physo155697;rank=10 scaffold_7 . exon 153035 153431 . - . ID=Physo155697.10;Parent=Physo155697;constitutive=1;ensembl_phase=2;rank=10 scaffold_7 . CDS 153561 153624 . - 0 ID=Physo155697;Parent=Physo155697;rank=9 scaffold_7 . exon 153561 153624 . - . ID=Physo155697.9;Parent=Physo155697;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_7 . CDS 153687 153712 . - 0 ID=Physo155697;Parent=Physo155697;rank=8 scaffold_7 . exon 153687 153712 . - . ID=Physo155697.8;Parent=Physo155697;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_7 . CDS 153831 154362 . - 0 ID=Physo155697;Parent=Physo155697;rank=7 scaffold_7 . exon 153831 154362 . - . ID=Physo155697.7;Parent=Physo155697;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_7 . CDS 154393 154900 . - 0 ID=Physo155697;Parent=Physo155697;rank=6 scaffold_7 . exon 154393 154900 . - . ID=Physo155697.6;Parent=Physo155697;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_7 . CDS 154952 155296 . - 0 ID=Physo155697;Parent=Physo155697;rank=5 scaffold_7 . exon 154952 155296 . - . ID=Physo155697.5;Parent=Physo155697;constitutive=1;rank=5 scaffold_7 . CDS 155384 155568 . - 0 ID=Physo155697;Parent=Physo155697;rank=4 scaffold_7 . exon 155384 155568 . - . ID=Physo155697.4;Parent=Physo155697;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 155617 155989 . - 0 ID=Physo155697;Parent=Physo155697;rank=3 scaffold_7 . exon 155617 155989 . - . ID=Physo155697.3;Parent=Physo155697;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 156139 156392 . - 0 ID=Physo155697;Parent=Physo155697;rank=2 scaffold_7 . exon 156139 156392 . - . ID=Physo155697.2;Parent=Physo155697;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 156476 156572 . - 0 ID=Physo155697;Parent=Physo155697;rank=1 scaffold_7 . exon 156476 156572 . - . ID=Physo155697.1;Parent=Physo155697;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . repeat_region 165432 165467 . ? . description=trf scaffold_7 ensembl protein_coding_gene 168396 169298 . + . ID=Physo108359;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70004;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 168396 169298 . + . ID=Physo108359;Parent=Physo108359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 168396 169298 . + 0 ID=Physo108359;Parent=Physo108359;rank=1 scaffold_7 . exon 168396 169298 . + . ID=Physo108359.1;Parent=Physo108359;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 169423 170641 . - . ID=Physo108360;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70005;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 169423 170641 . - . ID=Physo108360;Parent=Physo108360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 169423 170253 . - 0 ID=Physo108360;Parent=Physo108360;rank=2 scaffold_7 . exon 169423 170253 . - . ID=Physo108360.2;Parent=Physo108360;constitutive=1;rank=2 scaffold_7 . CDS 170324 170641 . - 0 ID=Physo108360;Parent=Physo108360;rank=1 scaffold_7 . exon 159646 160339 . - . ID=Physo129219.5;Parent=Physo129219;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_7 . exon 160431 160500 . - . ID=Physo129219.4;Parent=Physo129219;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . exon 160566 160614 . - . ID=Physo129219.3;Parent=Physo129219;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_7 . exon 160813 160825 . - . ID=Physo129219.2;Parent=Physo129219;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . exon 160871 162055 . - . ID=Physo129219.1;Parent=Physo129219;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 162511 163374 . + . ID=Physo129220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70045;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 162511 163374 . + . ID=Physo129220;Parent=Physo129220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 162511 163374 . + 0 ID=Physo129220;Parent=Physo129220;rank=1 scaffold_7 . exon 162511 163374 . + . ID=Physo129220.1;Parent=Physo129220;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 165562 166153 . + . ID=Physo129221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70046;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 165562 166153 . + . ID=Physo129221;Parent=Physo129221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 165562 166153 . + . ID=Physo129221.1;Parent=Physo129221;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 165590 166153 . + 0 ID=Physo129221;Parent=Physo129221;rank=1 scaffold_7 ensembl protein_coding_gene 166423 168189 . + . ID=Physo129222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70047;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 166423 168189 . + . ID=Physo129222;Parent=Physo129222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 166423 168189 . + . ID=Physo129222.1;Parent=Physo129222;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 166500 168077 . + 0 ID=Physo129222;Parent=Physo129222;rank=1 scaffold_7 . biological_region 169624 169626 0.999 + . logic_name=eponine scaffold_7 . biological_region 170508 170511 0.999 - . logic_name=eponine scaffold_7 . biological_region 170615 170616 0.999 + . logic_name=eponine scaffold_7 . biological_region 170873 170877 0.999 + . logic_name=eponine scaffold_7 . biological_region 171713 171715 0.999 + . logic_name=eponine scaffold_7 . biological_region 173965 173967 0.999 - . logic_name=eponine scaffold_7 . repeat_region 174453 174461 . ? . description=dust scaffold_7 . biological_region 174687 174691 0.999 + . logic_name=eponine scaffold_7 . biological_region 174712 174716 0.999 - . logic_name=eponine scaffold_7 . biological_region 174743 174745 0.999 - . logic_name=eponine scaffold_7 . biological_region 175967 175970 0.999 - . logic_name=eponine scaffold_7 . exon 170324 170641 . - . ID=Physo108360.1;Parent=Physo108360;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 174418 175648 . + . ID=Physo108361;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70006;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 174418 175648 . + . ID=Physo108361;Parent=Physo108361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 174418 175648 . + . ID=Physo108361.1;Parent=Physo108361;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 174487 175458 . + 0 ID=Physo108361;Parent=Physo108361;rank=1 scaffold_7 ensembl protein_coding_gene 171334 173898 . - . ID=Physo129225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70050;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 171334 173898 . - . ID=Physo129225;Parent=Physo129225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 171334 171486 . - 0 ID=Physo129225;Parent=Physo129225;rank=7 scaffold_7 . exon 171334 171486 . - . ID=Physo129225.7;Parent=Physo129225;constitutive=1;rank=7 scaffold_7 . CDS 171568 172351 . - 0 ID=Physo129225;Parent=Physo129225;rank=6 scaffold_7 . exon 171568 172351 . - . ID=Physo129225.6;Parent=Physo129225;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 . CDS 172422 172569 . - 0 ID=Physo129225;Parent=Physo129225;rank=5 scaffold_7 . exon 172422 172569 . - . ID=Physo129225.5;Parent=Physo129225;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_7 . CDS 172728 172842 . - 0 ID=Physo129225;Parent=Physo129225;rank=4 scaffold_7 . exon 172728 172842 . - . ID=Physo129225.4;Parent=Physo129225;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_7 . CDS 173102 173174 . - 0 ID=Physo129225;Parent=Physo129225;rank=3 scaffold_7 . exon 173102 173174 . - . ID=Physo129225.3;Parent=Physo129225;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 173253 173413 . - 0 ID=Physo129225;Parent=Physo129225;rank=2 scaffold_7 . exon 173253 173413 . - . ID=Physo129225.2;Parent=Physo129225;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 173482 173898 . - 0 ID=Physo129225;Parent=Physo129225;rank=1 scaffold_7 . exon 173482 173898 . - . ID=Physo129225.1;Parent=Physo129225;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 175862 176500 . + . ID=Physo129227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70052;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 175862 176500 . + . ID=Physo129227;Parent=Physo129227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 175862 176320 . + 0 ID=Physo129227;Parent=Physo129227;rank=1 scaffold_7 . exon 175862 176320 . + . ID=Physo129227.1;Parent=Physo129227;constitutive=1;rank=1 scaffold_7 . CDS 176396 176500 . + 0 ID=Physo129227;Parent=Physo129227;rank=2 scaffold_7 . exon 176396 176500 . + . ID=Physo129227.2;Parent=Physo129227;constitutive=1;rank=2 scaffold_7 . repeat_region 179889 179923 . ? . description=trf scaffold_7 . repeat_region 180334 180361 . ? . description=trf scaffold_7 ensembl protein_coding_gene 181980 182753 . + . ID=Physo129228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70053;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 181980 182753 . + . ID=Physo129228;Parent=Physo129228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 181980 182753 . + 0 ID=Physo129228;Parent=Physo129228;rank=1 scaffold_7 . exon 181980 182753 . + . ID=Physo129228.1;Parent=Physo129228;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 188212 189373 . + . ID=Physo129231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70056;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 188212 189373 . + . ID=Physo129231;Parent=Physo129231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 188212 188433 . + 0 ID=Physo129231;Parent=Physo129231;rank=1 scaffold_7 . exon 188212 188433 . + . ID=Physo129231.1;Parent=Physo129231;constitutive=1;rank=1 scaffold_7 . CDS 188543 188548 . + 0 ID=Physo129231;Parent=Physo129231;rank=2 scaffold_7 . exon 188543 188548 . + . ID=Physo129231.2;Parent=Physo129231;constitutive=1;rank=2 scaffold_7 . CDS 188698 188774 . + 0 ID=Physo129231;Parent=Physo129231;rank=3 scaffold_7 . exon 188698 188774 . + . ID=Physo129231.3;Parent=Physo129231;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_7 . CDS 188862 188956 . + 0 ID=Physo129231;Parent=Physo129231;rank=4 scaffold_7 . exon 188862 188956 . + . ID=Physo129231.4;Parent=Physo129231;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 189057 189373 . + 0 ID=Physo129231;Parent=Physo129231;rank=5 scaffold_7 . exon 189057 189373 . + . ID=Physo129231.5;Parent=Physo129231;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 ensembl protein_coding_gene 183082 187330 . - . ID=Physo155701;biotype=protein_coding;external_name=C_scaffold_7000030;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 183082 187330 . - . ID=Physo155701;Parent=Physo155701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 183082 183435 . - 0 ID=Physo155701;Parent=Physo155701;rank=6 scaffold_7 . exon 183082 183435 . - . ID=Physo155701.6;Parent=Physo155701;constitutive=1;rank=6 scaffold_7 . CDS 183511 183579 . - 0 ID=Physo155701;Parent=Physo155701;rank=5 scaffold_7 . exon 183511 183579 . - . ID=Physo155701.5;Parent=Physo155701;constitutive=1;rank=5 scaffold_7 . CDS 183656 184930 . - 0 ID=Physo155701;Parent=Physo155701;rank=4 scaffold_7 . exon 183656 184930 . - . ID=Physo155701.4;Parent=Physo155701;constitutive=1;rank=4 scaffold_7 . CDS 184976 185897 . - 0 ID=Physo155701;Parent=Physo155701;rank=3 scaffold_7 . exon 184976 185897 . - . ID=Physo155701.3;Parent=Physo155701;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 185955 186017 . - 0 ID=Physo155701;Parent=Physo155701;rank=2 scaffold_7 . exon 185955 186017 . - . ID=Physo155701.2;Parent=Physo155701;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 186114 187330 . - 0 ID=Physo155701;Parent=Physo155701;rank=1 scaffold_7 . exon 186114 187330 . - . ID=Physo155701.1;Parent=Physo155701;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . biological_region 189951 189952 0.999 + . logic_name=eponine scaffold_7 . biological_region 190846 190849 0.999 - . logic_name=eponine scaffold_7 . biological_region 191336 191336 0.999 + . logic_name=eponine scaffold_7 . biological_region 191429 191431 0.999 - . logic_name=eponine scaffold_7 . biological_region 191483 191483 0.999 + . logic_name=eponine scaffold_7 . biological_region 191810 191812 0.999 + . logic_name=eponine scaffold_7 . biological_region 191901 191901 0.999 - . logic_name=eponine scaffold_7 . biological_region 191946 191950 0.999 - . logic_name=eponine scaffold_7 . biological_region 192223 192225 0.999 + . logic_name=eponine scaffold_7 . biological_region 193065 193070 0.999 - . logic_name=eponine scaffold_7 . biological_region 193082 193082 0.999 + . logic_name=eponine scaffold_7 . biological_region 193090 193094 0.999 - . logic_name=eponine scaffold_7 . biological_region 193228 193233 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 189842 190381 . + . ID=Physo129232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70057;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 189842 190381 . + . ID=Physo129232;Parent=Physo129232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 189842 190381 . + . ID=Physo129232.1;Parent=Physo129232;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 189848 190252 . + 0 ID=Physo129232;Parent=Physo129232;rank=1 scaffold_7 ensembl protein_coding_gene 190759 192407 . + . ID=Physo129233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70058;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 190759 192407 . + . ID=Physo129233;Parent=Physo129233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 190759 190908 . + 0 ID=Physo129233;Parent=Physo129233;rank=1 scaffold_7 . exon 190759 190908 . + . ID=Physo129233.1;Parent=Physo129233;constitutive=1;rank=1 scaffold_7 . CDS 190983 192407 . + 0 ID=Physo129233;Parent=Physo129233;rank=2 scaffold_7 . exon 190983 192407 . + . ID=Physo129233.2;Parent=Physo129233;constitutive=1;rank=2 scaffold_7 ensembl protein_coding_gene 192893 197005 . + . ID=Physo129234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70059;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 192893 197005 . + . ID=Physo129234;Parent=Physo129234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 192893 196498 . + 0 ID=Physo129234;Parent=Physo129234;rank=1 scaffold_7 . exon 192893 196498 . + . ID=Physo129234.1;Parent=Physo129234;constitutive=1;rank=1 scaffold_7 . CDS 196584 196649 . + 0 ID=Physo129234;Parent=Physo129234;rank=2 scaffold_7 . exon 196584 196649 . + . ID=Physo129234.2;Parent=Physo129234;constitutive=1;rank=2 scaffold_7 . CDS 196719 196914 . + 0 ID=Physo129234;Parent=Physo129234;rank=3 scaffold_7 . exon 196719 196914 . + . ID=Physo129234.3;Parent=Physo129234;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 196995 197005 . + 0 ID=Physo129234;Parent=Physo129234;rank=4 scaffold_7 . exon 196995 197005 . + . ID=Physo129234.4;Parent=Physo129234;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . repeat_region 203241 203296 . ? . description=trf scaffold_7 . repeat_region 204296 204522 . + . description=Polinton-1_PI scaffold_7 . repeat_region 205821 205831 . ? . description=dust scaffold_7 ensembl protein_coding_gene 201446 202881 . + . ID=Physo129236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70061;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 201446 202881 . + . ID=Physo129236;Parent=Physo129236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 201446 202822 . + 0 ID=Physo129236;Parent=Physo129236;rank=1 scaffold_7 . exon 201446 202881 . + . ID=Physo129236.1;Parent=Physo129236;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 206001 206886 . - . ID=Physo129237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70062;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 206001 206886 . - . ID=Physo129237;Parent=Physo129237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 206001 206858 . - 0 ID=Physo129237;Parent=Physo129237;rank=1 scaffold_7 . exon 206001 206886 . - . ID=Physo129237.1;Parent=Physo129237;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 207107 210008 . + . ID=Physo129238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70063;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 207107 210008 . + . ID=Physo129238;Parent=Physo129238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 207107 209068 . + 0 ID=Physo129238;Parent=Physo129238;rank=1 scaffold_7 . exon 207107 209068 . + . ID=Physo129238.1;Parent=Physo129238;constitutive=1;rank=1 scaffold_7 . CDS 209138 209254 . + 0 ID=Physo129238;Parent=Physo129238;rank=2 scaffold_7 . exon 209138 209254 . + . ID=Physo129238.2;Parent=Physo129238;constitutive=1;rank=2 scaffold_7 . CDS 209322 210008 . + 0 ID=Physo129238;Parent=Physo129238;rank=3 scaffold_7 . exon 209322 210008 . + . ID=Physo129238.3;Parent=Physo129238;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 199452 200221 . - . ID=Physo155704;biotype=protein_coding;external_name=C_scaffold_7000033;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 199452 200221 . - . ID=Physo155704;Parent=Physo155704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 199452 200138 . - 0 ID=Physo155704;Parent=Physo155704;rank=2 scaffold_7 . exon 199452 200138 . - . ID=Physo155704.2;Parent=Physo155704;constitutive=1;rank=2 scaffold_7 . CDS 200160 200219 . - 0 ID=Physo155704;Parent=Physo155704;rank=1 scaffold_7 . exon 200160 200221 . - . ID=Physo155704.1;Parent=Physo155704;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . biological_region 210881 210888 0.999 + . logic_name=eponine scaffold_7 . biological_region 211560 211564 0.999 + . logic_name=eponine scaffold_7 . biological_region 211596 211599 0.999 + . logic_name=eponine scaffold_7 . biological_region 211611 211613 0.999 - . logic_name=eponine scaffold_7 . biological_region 211643 211646 0.999 - . logic_name=eponine scaffold_7 . biological_region 211734 211735 0.999 - . logic_name=eponine scaffold_7 . biological_region 211812 211814 0.999 + . logic_name=eponine scaffold_7 . biological_region 211812 211816 0.999 - . logic_name=eponine scaffold_7 . biological_region 211831 211833 0.999 - . logic_name=eponine scaffold_7 . biological_region 211940 211940 0.999 + . logic_name=eponine scaffold_7 . biological_region 211944 211950 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 210539 212142 . - . ID=Physo129239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70064;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 210539 212142 . - . ID=Physo129239;Parent=Physo129239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 210539 212134 . - 0 ID=Physo129239;Parent=Physo129239;rank=1 scaffold_7 . exon 210539 212142 . - . ID=Physo129239.1;Parent=Physo129239;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 212475 212998 . + . ID=Physo129240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70065;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 212475 212998 . + . ID=Physo129240;Parent=Physo129240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 212475 212941 . + 0 ID=Physo129240;Parent=Physo129240;rank=1 scaffold_7 . exon 212475 212941 . + . ID=Physo129240.1;Parent=Physo129240;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 212974 212998 . + 0 ID=Physo129240;Parent=Physo129240;rank=2 scaffold_7 . exon 212974 212998 . + . ID=Physo129240.2;Parent=Physo129240;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 ensembl protein_coding_gene 218059 219846 . + . ID=Physo129241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70066;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 218059 219846 . + . ID=Physo129241;Parent=Physo129241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 218059 218120 . + 0 ID=Physo129241;Parent=Physo129241;rank=1 scaffold_7 . exon 218059 218120 . + . ID=Physo129241.1;Parent=Physo129241;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 218142 218992 . + 0 ID=Physo129241;Parent=Physo129241;rank=2 scaffold_7 . exon 218142 218992 . + . ID=Physo129241.2;Parent=Physo129241;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 219209 219846 . + 0 ID=Physo129241;Parent=Physo129241;rank=3 scaffold_7 . exon 219209 219846 . + . ID=Physo129241.3;Parent=Physo129241;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . repeat_region 223853 223860 . ? . description=dust scaffold_7 . repeat_region 225040 225153 . ? . description=trf scaffold_7 ensembl protein_coding_gene 222163 223797 . - . ID=Physo129242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70067;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 222163 223797 . - . ID=Physo129242;Parent=Physo129242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 222163 223797 . - 0 ID=Physo129242;Parent=Physo129242;rank=1 scaffold_7 . exon 222163 223797 . - . ID=Physo129242.1;Parent=Physo129242;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 225310 233126 . + . ID=Physo129243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70068;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 225310 233126 . + . ID=Physo129243;Parent=Physo129243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 225310 225337 . + 0 ID=Physo129243;Parent=Physo129243;rank=1 scaffold_7 . exon 225310 225337 . + . ID=Physo129243.1;Parent=Physo129243;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 225376 225541 . + 0 ID=Physo129243;Parent=Physo129243;rank=2 scaffold_7 . exon 225376 225541 . + . ID=Physo129243.2;Parent=Physo129243;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 225584 227054 . + 0 ID=Physo129243;Parent=Physo129243;rank=3 scaffold_7 . exon 225584 227054 . + . ID=Physo129243.3;Parent=Physo129243;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 227160 227741 . + 0 ID=Physo129243;Parent=Physo129243;rank=4 scaffold_7 . exon 227160 227741 . + . ID=Physo129243.4;Parent=Physo129243;constitutive=1;rank=4 scaffold_7 . CDS 227762 228080 . + 0 ID=Physo129243;Parent=Physo129243;rank=5 scaffold_7 . exon 227762 228080 . + . ID=Physo129243.5;Parent=Physo129243;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_7 . CDS 228128 230291 . + 0 ID=Physo129243;Parent=Physo129243;rank=6 scaffold_7 . exon 228128 230291 . + . ID=Physo129243.6;Parent=Physo129243;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_7 . CDS 230339 230444 . + 0 ID=Physo129243;Parent=Physo129243;rank=7 scaffold_7 . CDS 230570 231655 . + 0 ID=Physo129243;Parent=Physo129243;rank=8 scaffold_7 . CDS 231836 232811 . + 0 ID=Physo129243;Parent=Physo129243;rank=9 scaffold_7 . CDS 232852 233126 . + 0 ID=Physo129243;Parent=Physo129243;rank=10 scaffold_7 . biological_region 233338 233344 0.999 + . logic_name=eponine scaffold_7 . biological_region 233360 233360 0.999 - . logic_name=eponine scaffold_7 . biological_region 233745 233746 0.999 + . logic_name=eponine scaffold_7 . biological_region 233991 234006 0.999 + . logic_name=eponine scaffold_7 . biological_region 234028 234031 0.999 - . logic_name=eponine scaffold_7 . biological_region 234149 234150 0.999 + . logic_name=eponine scaffold_7 . biological_region 234170 234170 0.999 + . logic_name=eponine scaffold_7 . biological_region 234177 234181 0.999 - . logic_name=eponine scaffold_7 . biological_region 234258 234259 0.999 + . logic_name=eponine scaffold_7 . biological_region 234284 234290 0.999 + . logic_name=eponine scaffold_7 . biological_region 234667 234668 0.999 + . logic_name=eponine scaffold_7 . biological_region 234713 234716 0.999 + . logic_name=eponine scaffold_7 . biological_region 234742 234748 0.999 - . logic_name=eponine scaffold_7 . biological_region 234826 234833 0.999 + . logic_name=eponine scaffold_7 . biological_region 234841 234845 0.999 - . logic_name=eponine scaffold_7 . biological_region 235462 235464 0.999 + . logic_name=eponine scaffold_7 . exon 230339 230444 . + . ID=Physo129243.7;Parent=Physo129243;constitutive=1;ensembl_phase=2;rank=7 scaffold_7 . exon 230570 231655 . + . ID=Physo129243.8;Parent=Physo129243;constitutive=1;rank=8 scaffold_7 . exon 231836 232811 . + . ID=Physo129243.9;Parent=Physo129243;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_7 . exon 232852 233126 . + . ID=Physo129243.10;Parent=Physo129243;constitutive=1;ensembl_phase=1;rank=10 scaffold_7 ensembl protein_coding_gene 233329 234930 . - . ID=Physo129244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70069;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 233329 234930 . - . ID=Physo129244;Parent=Physo129244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 233329 233694 . - 0 ID=Physo129244;Parent=Physo129244;rank=2 scaffold_7 . exon 233329 233694 . - . ID=Physo129244.2;Parent=Physo129244;constitutive=1;rank=2 scaffold_7 . CDS 233785 234930 . - 0 ID=Physo129244;Parent=Physo129244;rank=1 scaffold_7 . exon 233785 234930 . - . ID=Physo129244.1;Parent=Physo129244;constitutive=1;rank=1 scaffold_7 . repeat_region 240354 241194 . - . description=LSU-rRNA_Hca scaffold_7 . repeat_region 241436 241443 . ? . description=dust scaffold_7 . repeat_region 242969 243008 . ? . description=trf scaffold_7 . repeat_region 244276 244340 . ? . description=trf scaffold_7 . repeat_region 245158 245214 . ? . description=trf scaffold_7 . repeat_region 245164 245225 . ? . description=trf scaffold_7 ensembl protein_coding_gene 246795 249037 . - . ID=Physo108363;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70008;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 246795 249037 . - . ID=Physo108363;Parent=Physo108363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 246795 247389 . - . ID=Physo108363.2;Parent=Physo108363;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_7 . CDS 246851 247389 . - 0 ID=Physo108363;Parent=Physo108363;rank=2 scaffold_7 . CDS 247420 249037 . - 0 ID=Physo108363;Parent=Physo108363;rank=1 scaffold_7 . exon 247420 249037 . - . ID=Physo108363.1;Parent=Physo108363;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 240543 241173 . - . ID=Physo112026;biotype=protein_coding;external_name=estExt_Genewise1.C_70268;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 240543 241173 . - . ID=Physo112026;Parent=Physo112026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 240543 241173 . - . ID=Physo112026.1;Parent=Physo112026;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 240867 241052 . - 0 ID=Physo112026;Parent=Physo112026;rank=1 scaffold_7 ensembl protein_coding_gene 243018 244236 . - . ID=Physo129245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70070;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 243018 244236 . - . ID=Physo129245;Parent=Physo129245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 243018 243696 . - 0 ID=Physo129245;Parent=Physo129245;rank=3 scaffold_7 . exon 243018 243696 . - . ID=Physo129245.3;Parent=Physo129245;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 243970 244006 . - 0 ID=Physo129245;Parent=Physo129245;rank=2 scaffold_7 . exon 243970 244006 . - . ID=Physo129245.2;Parent=Physo129245;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 244143 244236 . - 0 ID=Physo129245;Parent=Physo129245;rank=1 scaffold_7 . exon 244143 244236 . - . ID=Physo129245.1;Parent=Physo129245;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 245568 246560 . + . ID=Physo129246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70071;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 245568 246560 . + . ID=Physo129246;Parent=Physo129246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 245568 245739 . + 0 ID=Physo129246;Parent=Physo129246;rank=1 scaffold_7 . exon 245568 245739 . + . ID=Physo129246.1;Parent=Physo129246;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 245826 245897 . + 0 ID=Physo129246;Parent=Physo129246;rank=2 scaffold_7 . exon 245826 245897 . + . ID=Physo129246.2;Parent=Physo129246;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 245977 246027 . + 0 ID=Physo129246;Parent=Physo129246;rank=3 scaffold_7 . exon 245977 246027 . + . ID=Physo129246.3;Parent=Physo129246;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 246166 246560 . + 0 ID=Physo129246;Parent=Physo129246;rank=4 scaffold_7 . exon 246166 246560 . + . ID=Physo129246.4;Parent=Physo129246;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . biological_region 249389 249398 0.999 + . logic_name=eponine scaffold_7 . biological_region 249484 249485 0.999 - . logic_name=eponine scaffold_7 . biological_region 249509 249512 0.999 + . logic_name=eponine scaffold_7 . biological_region 249624 249627 0.999 - . logic_name=eponine scaffold_7 . biological_region 254505 254506 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 256840 257684 . - . ID=Physo108364;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70009;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 256840 257684 . - . ID=Physo108364;Parent=Physo108364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 256840 257290 . - . ID=Physo108364.2;Parent=Physo108364;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_7 . CDS 256923 257290 . - 0 ID=Physo108364;Parent=Physo108364;rank=2 scaffold_7 . CDS 257646 257649 . - 0 ID=Physo108364;Parent=Physo108364;rank=1 scaffold_7 . exon 257646 257684 . - . ID=Physo108364.1;Parent=Physo108364;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 249317 250606 . + . ID=Physo129248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70073;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 249317 250606 . + . ID=Physo129248;Parent=Physo129248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 249317 249739 . + . ID=Physo129248.1;Parent=Physo129248;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 . CDS 249330 249739 . + 0 ID=Physo129248;Parent=Physo129248;rank=1 scaffold_7 . CDS 249831 250569 . + 0 ID=Physo129248;Parent=Physo129248;rank=2 scaffold_7 . exon 249831 250569 . + . ID=Physo129248.2;Parent=Physo129248;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 250598 250606 . + 0 ID=Physo129248;Parent=Physo129248;rank=3 scaffold_7 . exon 250598 250606 . + . ID=Physo129248.3;Parent=Physo129248;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 253158 254540 . - . ID=Physo129249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70074;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 253158 254540 . - . ID=Physo129249;Parent=Physo129249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 253158 254540 . - 0 ID=Physo129249;Parent=Physo129249;rank=1 scaffold_7 . exon 253158 254540 . - . ID=Physo129249.1;Parent=Physo129249;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 257963 259291 . - . ID=Physo129251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70076;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 257963 259291 . - . ID=Physo129251;Parent=Physo129251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 257963 259291 . - 0 ID=Physo129251;Parent=Physo129251;rank=1 scaffold_7 . exon 257963 259291 . - . ID=Physo129251.1;Parent=Physo129251;constitutive=1;rank=1 scaffold_7 . repeat_region 263404 263424 . ? . description=dust scaffold_7 . repeat_region 263404 263424 . ? . description=trf scaffold_7 ensembl protein_coding_gene 265135 271911 . - . ID=Physo129252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70077;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 265135 271911 . - . ID=Physo129252;Parent=Physo129252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 265135 271911 . - 0 ID=Physo129252;Parent=Physo129252;rank=1 scaffold_7 . exon 265135 271911 . - . ID=Physo129252.1;Parent=Physo129252;constitutive=1;rank=1 scaffold_7 . repeat_region 270965 271129 . + . description=(CTG)n scaffold_7 . biological_region 271534 271537 0.999 + . logic_name=eponine scaffold_7 . biological_region 272082 272088 0.999 + . logic_name=eponine scaffold_7 . biological_region 272172 272173 0.999 + . logic_name=eponine scaffold_7 . biological_region 272759 272762 0.999 + . logic_name=eponine scaffold_7 . biological_region 274412 274412 0.999 + . logic_name=eponine scaffold_7 . biological_region 274455 274457 0.999 - . logic_name=eponine scaffold_7 . biological_region 274481 274486 0.999 - . logic_name=eponine scaffold_7 . biological_region 274757 274758 0.999 + . logic_name=eponine scaffold_7 . biological_region 274773 274777 0.999 + . logic_name=eponine scaffold_7 . biological_region 274854 274857 0.999 - . logic_name=eponine scaffold_7 . biological_region 277999 278001 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 274109 276043 . - . ID=Physo129253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70078;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 274109 276043 . - . ID=Physo129253;Parent=Physo129253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 274109 276043 . - 0 ID=Physo129253;Parent=Physo129253;rank=1 scaffold_7 . exon 274109 276043 . - . ID=Physo129253.1;Parent=Physo129253;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 276565 279844 . - . ID=Physo155710;biotype=protein_coding;external_name=C_scaffold_7000039;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 276565 279844 . - . ID=Physo155710;Parent=Physo155710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 276565 277850 . - 0 ID=Physo155710;Parent=Physo155710;rank=5 scaffold_7 . exon 276565 277850 . - . ID=Physo155710.5;Parent=Physo155710;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 . CDS 278029 278080 . - 0 ID=Physo155710;Parent=Physo155710;rank=4 scaffold_7 . exon 278029 278080 . - . ID=Physo155710.4;Parent=Physo155710;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_7 . CDS 278183 279300 . - 0 ID=Physo155710;Parent=Physo155710;rank=3 scaffold_7 . exon 278183 279300 . - . ID=Physo155710.3;Parent=Physo155710;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 279365 279504 . - 0 ID=Physo155710;Parent=Physo155710;rank=2 scaffold_7 . CDS 279582 279844 . - 0 ID=Physo155710;Parent=Physo155710;rank=1 scaffold_7 . repeat_region 280711 280718 . ? . description=dust scaffold_7 . repeat_region 281705 281754 . ? . description=dust scaffold_7 . repeat_region 287742 287933 . ? . description=dust scaffold_7 . repeat_region 287754 287916 . ? . description=trf scaffold_7 . repeat_region 287766 287970 . ? . description=trf scaffold_7 ensembl protein_coding_gene 287723 288664 . + . ID=Physo111761;biotype=protein_coding;external_name=estExt_Genewise1.C_70003;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 287723 288664 . + . ID=Physo111761;Parent=Physo111761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 287723 288664 . + . ID=Physo111761.1;Parent=Physo111761;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 287924 288664 . + 0 ID=Physo111761;Parent=Physo111761;rank=1 scaffold_7 ensembl protein_coding_gene 280775 281503 . + . ID=Physo129255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70080;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 280775 281503 . + . ID=Physo129255;Parent=Physo129255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 280775 281392 . + 0 ID=Physo129255;Parent=Physo129255;rank=1 scaffold_7 . exon 280775 281503 . + . ID=Physo129255.1;Parent=Physo129255;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 285797 287456 . - . ID=Physo129256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70081;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 285797 287456 . - . ID=Physo129256;Parent=Physo129256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 285797 285844 . - 0 ID=Physo129256;Parent=Physo129256;rank=5 scaffold_7 . exon 285797 285844 . - . ID=Physo129256.5;Parent=Physo129256;constitutive=1;rank=5 scaffold_7 . CDS 285966 286575 . - 0 ID=Physo129256;Parent=Physo129256;rank=4 scaffold_7 . exon 285966 286575 . - . ID=Physo129256.4;Parent=Physo129256;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 286759 286879 . - 0 ID=Physo129256;Parent=Physo129256;rank=3 scaffold_7 . exon 286759 286879 . - . ID=Physo129256.3;Parent=Physo129256;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_7 . CDS 286957 287136 . - 0 ID=Physo129256;Parent=Physo129256;rank=2 scaffold_7 . exon 286957 287136 . - . ID=Physo129256.2;Parent=Physo129256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 287216 287456 . - 0 ID=Physo129256;Parent=Physo129256;rank=1 scaffold_7 . exon 287216 287456 . - . ID=Physo129256.1;Parent=Physo129256;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . exon 279365 279504 . - . ID=Physo155710.2;Parent=Physo155710;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . exon 279582 279844 . - . ID=Physo155710.1;Parent=Physo155710;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . biological_region 290390 290391 0.999 + . logic_name=eponine scaffold_7 . biological_region 298149 298150 0.999 + . logic_name=eponine scaffold_7 ensembl snRNA_gene 291147 291272 . + . ID=EPrPSOG00000000291;biotype=snRNA;description=U6atac minor spliceosomal RNA [Source:RFAM%3BAcc:RF00619];external_name=U6atac;logic_name=ncrna_eg scaffold_7 ensembl snRNA 291147 291272 . + . ID=EPrPSOT00000000291;Parent=EPrPSOG00000000291;biotype=snRNA;logic_name=ncrna_eg scaffold_7 . exon 291147 291272 . + . ID=EPrPSOE00000000291;Parent=EPrPSOT00000000291;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 293691 295101 . + . ID=Physo111765;biotype=protein_coding;external_name=estExt_Genewise1.C_70007;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 293691 295101 . + . ID=Physo111765;Parent=Physo111765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 293691 294940 . + . ID=Physo111765.1;Parent=Physo111765;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 . CDS 293706 294940 . + 0 ID=Physo111765;Parent=Physo111765;rank=1 scaffold_7 . CDS 295017 295101 . + 0 ID=Physo111765;Parent=Physo111765;rank=2 scaffold_7 . exon 295017 295101 . + . ID=Physo111765.2;Parent=Physo111765;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 ensembl protein_coding_gene 295513 296616 . - . ID=Physo111770;biotype=protein_coding;external_name=estExt_Genewise1.C_70012;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 295513 296616 . - . ID=Physo111770;Parent=Physo111770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 295513 295700 . - . ID=Physo111770.6;Parent=Physo111770;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_7 . CDS 295515 295700 . - 0 ID=Physo111770;Parent=Physo111770;rank=6 scaffold_7 . CDS 295772 295891 . - 0 ID=Physo111770;Parent=Physo111770;rank=5 scaffold_7 . exon 295772 295891 . - . ID=Physo111770.5;Parent=Physo111770;constitutive=1;rank=5 scaffold_7 . CDS 295960 296031 . - 0 ID=Physo111770;Parent=Physo111770;rank=4 scaffold_7 . exon 295960 296031 . - . ID=Physo111770.4;Parent=Physo111770;constitutive=1;rank=4 scaffold_7 . CDS 296127 296195 . - 0 ID=Physo111770;Parent=Physo111770;rank=3 scaffold_7 . exon 296127 296195 . - . ID=Physo111770.3;Parent=Physo111770;constitutive=1;rank=3 scaffold_7 . CDS 296275 296362 . - 0 ID=Physo111770;Parent=Physo111770;rank=2 scaffold_7 . exon 296275 296362 . - . ID=Physo111770.2;Parent=Physo111770;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 296457 296458 . - 0 ID=Physo111770;Parent=Physo111770;rank=1 scaffold_7 . exon 296457 296616 . - . ID=Physo111770.1;Parent=Physo111770;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 289403 292598 . + . ID=Physo129258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70083;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 289403 292598 . + . ID=Physo129258;Parent=Physo129258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 289403 289483 . + 0 ID=Physo129258;Parent=Physo129258;rank=1 scaffold_7 . exon 289403 289483 . + . ID=Physo129258.1;Parent=Physo129258;constitutive=1;rank=1 scaffold_7 . CDS 289545 289793 . + 0 ID=Physo129258;Parent=Physo129258;rank=2 scaffold_7 . exon 289545 289793 . + . ID=Physo129258.2;Parent=Physo129258;constitutive=1;rank=2 scaffold_7 . CDS 289870 290952 . + 0 ID=Physo129258;Parent=Physo129258;rank=3 scaffold_7 . exon 289870 290952 . + . ID=Physo129258.3;Parent=Physo129258;constitutive=1;rank=3 scaffold_7 . CDS 291302 291591 . + 0 ID=Physo129258;Parent=Physo129258;rank=4 scaffold_7 . exon 291302 291591 . + . ID=Physo129258.4;Parent=Physo129258;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . CDS 291677 291818 . + 0 ID=Physo129258;Parent=Physo129258;rank=5 scaffold_7 . exon 291677 291818 . + . ID=Physo129258.5;Parent=Physo129258;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 291886 292121 . + 0 ID=Physo129258;Parent=Physo129258;rank=6 scaffold_7 . exon 291886 292121 . + . ID=Physo129258.6;Parent=Physo129258;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_7 . CDS 292202 292598 . + 0 ID=Physo129258;Parent=Physo129258;rank=7 scaffold_7 . exon 292202 292598 . + . ID=Physo129258.7;Parent=Physo129258;constitutive=1;ensembl_phase=2;rank=7 scaffold_7 . repeat_region 300561 300596 . ? . description=trf scaffold_7 . repeat_region 300754 300794 . ? . description=dust scaffold_7 . repeat_region 301999 302178 . + . description=(CAG)n scaffold_7 . repeat_region 302098 302141 . ? . description=dust scaffold_7 . repeat_region 302111 302141 . ? . description=trf scaffold_7 . repeat_region 302177 302232 . ? . description=trf scaffold_7 . repeat_region 302177 302233 . ? . description=trf scaffold_7 ensembl protein_coding_gene 299944 302961 . + . ID=Physo129261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70086;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 299944 302961 . + . ID=Physo129261;Parent=Physo129261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 299944 301412 . + 0 ID=Physo129261;Parent=Physo129261;rank=1 scaffold_7 . exon 299944 301412 . + . ID=Physo129261.1;Parent=Physo129261;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 301495 302692 . + 0 ID=Physo129261;Parent=Physo129261;rank=2 scaffold_7 . exon 301495 302961 . + . ID=Physo129261.2;Parent=Physo129261;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_7 ensembl protein_coding_gene 303441 303917 . - . ID=Physo129262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70087;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 303441 303917 . - . ID=Physo129262;Parent=Physo129262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 303441 303917 . - 0 ID=Physo129262;Parent=Physo129262;rank=1 scaffold_7 . exon 303441 303917 . - . ID=Physo129262.1;Parent=Physo129262;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 304697 305698 . + . ID=Physo129263;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70088;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 304697 305698 . + . ID=Physo129263;Parent=Physo129263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 304697 305698 . + 0 ID=Physo129263;Parent=Physo129263;rank=1 scaffold_7 . exon 304697 305698 . + . ID=Physo129263.1;Parent=Physo129263;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 305855 308686 . - . ID=Physo129264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70089;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 305855 308686 . - . ID=Physo129264;Parent=Physo129264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 305855 308686 . - 0 ID=Physo129264;Parent=Physo129264;rank=1 scaffold_7 . exon 305855 308686 . - . ID=Physo129264.1;Parent=Physo129264;constitutive=1;rank=1 scaffold_7 . biological_region 310083 310088 0.999 - . logic_name=eponine scaffold_7 . biological_region 310176 310177 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 309183 310203 . - . ID=Physo108367;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70012;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 309183 310203 . - . ID=Physo108367;Parent=Physo108367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 309183 309587 . - 0 ID=Physo108367;Parent=Physo108367;rank=2 scaffold_7 . exon 309183 309587 . - . ID=Physo108367.2;Parent=Physo108367;constitutive=1;rank=2 scaffold_7 . CDS 309664 310203 . - 0 ID=Physo108367;Parent=Physo108367;rank=1 scaffold_7 . exon 309664 310203 . - . ID=Physo108367.1;Parent=Physo108367;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 310347 313596 . - . ID=Physo129266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70091;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 310347 313596 . - . ID=Physo129266;Parent=Physo129266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 310347 310517 . - 0 ID=Physo129266;Parent=Physo129266;rank=6 scaffold_7 . exon 310347 310517 . - . ID=Physo129266.6;Parent=Physo129266;constitutive=1;rank=6 scaffold_7 . CDS 310604 310688 . - 0 ID=Physo129266;Parent=Physo129266;rank=5 scaffold_7 . exon 310604 310688 . - . ID=Physo129266.5;Parent=Physo129266;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 310761 312852 . - 0 ID=Physo129266;Parent=Physo129266;rank=4 scaffold_7 . exon 310761 312852 . - . ID=Physo129266.4;Parent=Physo129266;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_7 . CDS 312994 313130 . - 0 ID=Physo129266;Parent=Physo129266;rank=3 scaffold_7 . exon 312994 313130 . - . ID=Physo129266.3;Parent=Physo129266;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 313203 313239 . - 0 ID=Physo129266;Parent=Physo129266;rank=2 scaffold_7 . exon 313203 313239 . - . ID=Physo129266.2;Parent=Physo129266;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 313305 313596 . - 0 ID=Physo129266;Parent=Physo129266;rank=1 scaffold_7 . exon 313305 313596 . - . ID=Physo129266.1;Parent=Physo129266;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 316808 317194 . + . ID=Physo129267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70092;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 316808 317194 . + . ID=Physo129267;Parent=Physo129267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 316808 317194 . + 0 ID=Physo129267;Parent=Physo129267;rank=1 scaffold_7 . exon 316808 317194 . + . ID=Physo129267.1;Parent=Physo129267;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 317372 319270 . - . ID=Physo129268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70093;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 317372 319270 . - . ID=Physo129268;Parent=Physo129268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 317372 319270 . - 0 ID=Physo129268;Parent=Physo129268;rank=1 scaffold_7 . exon 317372 319270 . - . ID=Physo129268.1;Parent=Physo129268;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 319974 322060 . - . ID=Physo129269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70094;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 319974 322060 . - . ID=Physo129269;Parent=Physo129269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 319974 321083 . - 0 ID=Physo129269;Parent=Physo129269;rank=2 scaffold_7 . exon 319974 321083 . - . ID=Physo129269.2;Parent=Physo129269;constitutive=1;rank=2 scaffold_7 . CDS 321119 322060 . - 0 ID=Physo129269;Parent=Physo129269;rank=1 scaffold_7 . exon 321119 322060 . - . ID=Physo129269.1;Parent=Physo129269;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 322119 327767 . + . ID=Physo129270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70095;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 322119 327767 . + . ID=Physo129270;Parent=Physo129270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 322119 322686 . + . ID=Physo129270.1;Parent=Physo129270;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 . CDS 322460 322686 . + 0 ID=Physo129270;Parent=Physo129270;rank=1 scaffold_7 . CDS 322764 322904 . + 0 ID=Physo129270;Parent=Physo129270;rank=2 scaffold_7 . exon 322764 322904 . + . ID=Physo129270.2;Parent=Physo129270;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 322973 324308 . + 0 ID=Physo129270;Parent=Physo129270;rank=3 scaffold_7 . exon 322973 324308 . + . ID=Physo129270.3;Parent=Physo129270;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 324386 324460 . + 0 ID=Physo129270;Parent=Physo129270;rank=4 scaffold_7 . exon 324386 324460 . + . ID=Physo129270.4;Parent=Physo129270;constitutive=1;rank=4 scaffold_7 . CDS 324540 325150 . + 0 ID=Physo129270;Parent=Physo129270;rank=5 scaffold_7 . exon 324540 325150 . + . ID=Physo129270.5;Parent=Physo129270;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_7 . CDS 325218 325455 . + 0 ID=Physo129270;Parent=Physo129270;rank=6 scaffold_7 . exon 325218 325455 . + . ID=Physo129270.6;Parent=Physo129270;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 . CDS 325542 325729 . + 0 ID=Physo129270;Parent=Physo129270;rank=7 scaffold_7 . exon 325542 325729 . + . ID=Physo129270.7;Parent=Physo129270;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_7 . CDS 325791 326808 . + 0 ID=Physo129270;Parent=Physo129270;rank=8 scaffold_7 . exon 325791 326808 . + . ID=Physo129270.8;Parent=Physo129270;constitutive=1;ensembl_phase=2;rank=8 scaffold_7 . CDS 326877 327767 . + 0 ID=Physo129270;Parent=Physo129270;rank=9 scaffold_7 . exon 326877 327767 . + . ID=Physo129270.9;Parent=Physo129270;constitutive=1;rank=9 scaffold_7 ensembl protein_coding_gene 327889 329187 . - . ID=Physo129271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70096;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 327889 329187 . - . ID=Physo129271;Parent=Physo129271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 327889 329187 . - 0 ID=Physo129271;Parent=Physo129271;rank=1 scaffold_7 . exon 327889 329187 . - . ID=Physo129271.1;Parent=Physo129271;constitutive=1;rank=1 scaffold_7 . biological_region 329198 329200 0.999 - . logic_name=eponine scaffold_7 . repeat_region 329586 329593 . ? . description=dust scaffold_7 . repeat_region 332062 332087 . ? . description=trf scaffold_7 . repeat_region 332154 332199 . ? . description=trf scaffold_7 . biological_region 332359 332359 0.999 + . logic_name=eponine scaffold_7 . repeat_region 332592 332635 . ? . description=trf scaffold_7 . biological_region 333443 333445 0.999 - . logic_name=eponine scaffold_7 . biological_region 334306 334306 0.999 + . logic_name=eponine scaffold_7 . biological_region 334770 334771 0.999 - . logic_name=eponine scaffold_7 . biological_region 337694 337694 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 333995 334927 . + . ID=Physo111776;biotype=protein_coding;external_name=estExt_Genewise1.C_70018;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 333995 334927 . + . ID=Physo111776;Parent=Physo111776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 333995 334927 . + . ID=Physo111776.1;Parent=Physo111776;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 333996 334754 . + 0 ID=Physo111776;Parent=Physo111776;rank=1 scaffold_7 ensembl protein_coding_gene 330060 331009 . + . ID=Physo129272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70097;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 330060 331009 . + . ID=Physo129272;Parent=Physo129272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 330060 330248 . + 0 ID=Physo129272;Parent=Physo129272;rank=1 scaffold_7 . exon 330060 330248 . + . ID=Physo129272.1;Parent=Physo129272;constitutive=1;rank=1 scaffold_7 . CDS 330331 330462 . + 0 ID=Physo129272;Parent=Physo129272;rank=2 scaffold_7 . exon 330331 330462 . + . ID=Physo129272.2;Parent=Physo129272;constitutive=1;rank=2 scaffold_7 . CDS 330543 330587 . + 0 ID=Physo129272;Parent=Physo129272;rank=3 scaffold_7 . exon 330543 330587 . + . ID=Physo129272.3;Parent=Physo129272;constitutive=1;rank=3 scaffold_7 . CDS 330664 330765 . + 0 ID=Physo129272;Parent=Physo129272;rank=4 scaffold_7 . exon 330664 330765 . + . ID=Physo129272.4;Parent=Physo129272;constitutive=1;rank=4 scaffold_7 . CDS 330836 330921 . + 0 ID=Physo129272;Parent=Physo129272;rank=5 scaffold_7 . exon 330836 330921 . + . ID=Physo129272.5;Parent=Physo129272;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_7 . CDS 330990 331008 . + 0 ID=Physo129272;Parent=Physo129272;rank=6 scaffold_7 . exon 330990 331009 . + . ID=Physo129272.6;Parent=Physo129272;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_7 ensembl protein_coding_gene 331998 333527 . - . ID=Physo129273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70098;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 331998 333527 . - . ID=Physo129273;Parent=Physo129273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 331998 333527 . - 0 ID=Physo129273;Parent=Physo129273;rank=1 scaffold_7 . exon 331998 333527 . - . ID=Physo129273.1;Parent=Physo129273;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 338459 339640 . + . ID=Physo129275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70100;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 338459 339640 . + . ID=Physo129275;Parent=Physo129275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 338459 339640 . + 0 ID=Physo129275;Parent=Physo129275;rank=1 scaffold_7 . exon 338459 339640 . + . ID=Physo129275.1;Parent=Physo129275;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 340103 340423 . + . ID=Physo129276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70101;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 340103 340423 . + . ID=Physo129276;Parent=Physo129276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 340103 340423 . + 0 ID=Physo129276;Parent=Physo129276;rank=1 scaffold_7 . exon 340103 340423 . + . ID=Physo129276.1;Parent=Physo129276;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 340560 341101 . - . ID=Physo129277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70102;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 340560 341101 . - . ID=Physo129277;Parent=Physo129277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 340560 340748 . - 0 ID=Physo129277;Parent=Physo129277;rank=2 scaffold_7 . exon 340560 340748 . - . ID=Physo129277.2;Parent=Physo129277;constitutive=1;rank=2 scaffold_7 . CDS 340799 341101 . - 0 ID=Physo129277;Parent=Physo129277;rank=1 scaffold_7 . exon 340799 341101 . - . ID=Physo129277.1;Parent=Physo129277;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 341476 342024 . - . ID=Physo129278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70103;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 341476 342024 . - . ID=Physo129278;Parent=Physo129278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 341476 342024 . - . ID=Physo129278.1;Parent=Physo129278;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 341484 342020 . - 0 ID=Physo129278;Parent=Physo129278;rank=1 scaffold_7 ensembl protein_coding_gene 342910 344088 . - . ID=Physo129279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70104;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 342910 344088 . - . ID=Physo129279;Parent=Physo129279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 342910 344088 . - 0 ID=Physo129279;Parent=Physo129279;rank=1 scaffold_7 . exon 342910 344088 . - . ID=Physo129279.1;Parent=Physo129279;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 345476 346756 . + . ID=Physo129280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70105;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 345476 346756 . + . ID=Physo129280;Parent=Physo129280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 345476 346756 . + 0 ID=Physo129280;Parent=Physo129280;rank=1 scaffold_7 . exon 345476 346756 . + . ID=Physo129280.1;Parent=Physo129280;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 346965 348511 . - . ID=Physo129281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70106;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 346965 348511 . - . ID=Physo129281;Parent=Physo129281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 346965 348479 . - 0 ID=Physo129281;Parent=Physo129281;rank=1 scaffold_7 . exon 346965 348511 . - . ID=Physo129281.1;Parent=Physo129281;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . repeat_region 350685 350867 . - . description=GypsyPi-1c_LTR scaffold_7 . repeat_region 350968 351290 . - . description=GypsyPi-1c_I-int scaffold_7 . biological_region 351221 351224 0.999 + . logic_name=eponine scaffold_7 . biological_region 351417 351422 0.999 + . logic_name=eponine scaffold_7 . repeat_region 351822 353681 . - . description=GypsyPi-1c_I-int scaffold_7 . biological_region 353216 353216 0.999 - . logic_name=eponine scaffold_7 . biological_region 353993 353993 0.999 - . logic_name=eponine scaffold_7 . biological_region 354098 354098 0.999 + . logic_name=eponine scaffold_7 . repeat_region 354395 354456 . ? . description=trf scaffold_7 . repeat_region 354395 354480 . ? . description=trf scaffold_7 . biological_region 354459 354464 0.999 + . logic_name=eponine scaffold_7 . biological_region 354489 354490 0.999 + . logic_name=eponine scaffold_7 . biological_region 354509 354510 0.999 + . logic_name=eponine scaffold_7 . biological_region 354538 354540 0.999 + . logic_name=eponine scaffold_7 . biological_region 354542 354548 0.999 - . logic_name=eponine scaffold_7 . repeat_region 354599 354645 . ? . description=trf scaffold_7 . biological_region 354627 354632 0.999 + . logic_name=eponine scaffold_7 . biological_region 354645 354651 0.999 - . logic_name=eponine scaffold_7 . repeat_region 354724 355277 . - . description=GypsyPi-1c_I-int scaffold_7 ensembl protein_coding_gene 349021 350307 . + . ID=Physo129282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70107;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 349021 350307 . + . ID=Physo129282;Parent=Physo129282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 349021 350307 . + 0 ID=Physo129282;Parent=Physo129282;rank=1 scaffold_7 . exon 349021 350307 . + . ID=Physo129282.1;Parent=Physo129282;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 351061 353213 . + . ID=Physo129283;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70108;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 351061 353213 . + . ID=Physo129283;Parent=Physo129283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 351061 351451 . + 0 ID=Physo129283;Parent=Physo129283;rank=1 scaffold_7 . exon 351061 351451 . + . ID=Physo129283.1;Parent=Physo129283;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 351487 353213 . + 0 ID=Physo129283;Parent=Physo129283;rank=2 scaffold_7 . exon 351487 353213 . + . ID=Physo129283.2;Parent=Physo129283;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 ensembl protein_coding_gene 357658 366842 . - . ID=Physo129284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70109;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 357658 366842 . - . ID=Physo129284;Parent=Physo129284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 357658 357713 . - 0 ID=Physo129284;Parent=Physo129284;rank=10 scaffold_7 . exon 357658 357713 . - . ID=Physo129284.10;Parent=Physo129284;constitutive=1;ensembl_phase=1;rank=10 scaffold_7 . CDS 358013 358531 . - 0 ID=Physo129284;Parent=Physo129284;rank=9 scaffold_7 . exon 358013 358531 . - . ID=Physo129284.9;Parent=Physo129284;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_7 . CDS 358812 361039 . - 0 ID=Physo129284;Parent=Physo129284;rank=8 scaffold_7 . exon 358812 361039 . - . ID=Physo129284.8;Parent=Physo129284;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_7 . CDS 361433 361995 . - 0 ID=Physo129284;Parent=Physo129284;rank=7 scaffold_7 . CDS 362406 362543 . - 0 ID=Physo129284;Parent=Physo129284;rank=6 scaffold_7 . CDS 362695 363381 . - 0 ID=Physo129284;Parent=Physo129284;rank=5 scaffold_7 . CDS 363538 364148 . - 0 ID=Physo129284;Parent=Physo129284;rank=4 scaffold_7 . CDS 364304 365619 . - 0 ID=Physo129284;Parent=Physo129284;rank=3 scaffold_7 . CDS 365862 366373 . - 0 ID=Physo129284;Parent=Physo129284;rank=2 scaffold_7 . CDS 366435 366842 . - 0 ID=Physo129284;Parent=Physo129284;rank=1 scaffold_7 . repeat_region 361905 361957 . ? . description=dust scaffold_7 . exon 361433 361995 . - . ID=Physo129284.7;Parent=Physo129284;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_7 . exon 362406 362543 . - . ID=Physo129284.6;Parent=Physo129284;constitutive=1;rank=6 scaffold_7 . exon 362695 363381 . - . ID=Physo129284.5;Parent=Physo129284;constitutive=1;rank=5 scaffold_7 . exon 363538 364148 . - . ID=Physo129284.4;Parent=Physo129284;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . exon 364304 365619 . - . ID=Physo129284.3;Parent=Physo129284;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . exon 365862 366373 . - . ID=Physo129284.2;Parent=Physo129284;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . exon 366435 366842 . - . ID=Physo129284.1;Parent=Physo129284;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 367726 368034 . + . ID=Physo129285;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70110;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 367726 368034 . + . ID=Physo129285;Parent=Physo129285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 367726 368034 . + 0 ID=Physo129285;Parent=Physo129285;rank=1 scaffold_7 . exon 367726 368034 . + . ID=Physo129285.1;Parent=Physo129285;constitutive=1;rank=1 scaffold_7 . repeat_region 372334 372377 . ? . description=trf scaffold_7 . repeat_region 372879 372928 . ? . description=trf scaffold_7 . biological_region 373119 373123 0.999 + . logic_name=eponine scaffold_7 . biological_region 375540 375545 0.999 - . logic_name=eponine scaffold_7 . biological_region 375597 375602 0.999 + . logic_name=eponine scaffold_7 . biological_region 376094 376096 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 370698 371275 . + . ID=Physo111780;biotype=protein_coding;external_name=estExt_Genewise1.C_70022;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 370698 371275 . + . ID=Physo111780;Parent=Physo111780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 370698 370788 . + . ID=Physo111780.1;Parent=Physo111780;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . exon 370842 371275 . + . ID=Physo111780.2;Parent=Physo111780;constitutive=1;ensembl_phase=-1;rank=2 scaffold_7 . CDS 371054 371275 . + 0 ID=Physo111780;Parent=Physo111780;rank=1 scaffold_7 ensembl protein_coding_gene 373590 374387 . + . ID=Physo129286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70111;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 373590 374387 . + . ID=Physo129286;Parent=Physo129286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 373590 373761 . + 0 ID=Physo129286;Parent=Physo129286;rank=1 scaffold_7 . exon 373590 373761 . + . ID=Physo129286.1;Parent=Physo129286;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 373921 373931 . + 0 ID=Physo129286;Parent=Physo129286;rank=2 scaffold_7 . exon 373921 373931 . + . ID=Physo129286.2;Parent=Physo129286;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 373992 374330 . + 0 ID=Physo129286;Parent=Physo129286;rank=3 scaffold_7 . exon 373992 374387 . + . ID=Physo129286.3;Parent=Physo129286;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_7 ensembl protein_coding_gene 375236 375908 . + . ID=Physo129287;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70112;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 375236 375908 . + . ID=Physo129287;Parent=Physo129287;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 375236 375243 . + 0 ID=Physo129287;Parent=Physo129287;rank=1 scaffold_7 . exon 375236 375243 . + . ID=Physo129287.1;Parent=Physo129287;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 375298 375732 . + 0 ID=Physo129287;Parent=Physo129287;rank=2 scaffold_7 . exon 375298 375732 . + . ID=Physo129287.2;Parent=Physo129287;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 375803 375908 . + 0 ID=Physo129287;Parent=Physo129287;rank=3 scaffold_7 . exon 375803 375908 . + . ID=Physo129287.3;Parent=Physo129287;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 ensembl protein_coding_gene 376804 378069 . - . ID=Physo129288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70113;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 376804 378069 . - . ID=Physo129288;Parent=Physo129288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 376804 377388 . - 0 ID=Physo129288;Parent=Physo129288;rank=1 scaffold_7 . exon 376804 378069 . - . ID=Physo129288.1;Parent=Physo129288;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . repeat_region 383132 383218 . + . description=(AGATG)n scaffold_7 . repeat_region 383134 383216 . ? . description=dust scaffold_7 ensembl protein_coding_gene 381032 381447 . - . ID=Physo129289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70114;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 381032 381447 . - . ID=Physo129289;Parent=Physo129289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 381032 381325 . - 0 ID=Physo129289;Parent=Physo129289;rank=2 scaffold_7 . exon 381032 381325 . - . ID=Physo129289.2;Parent=Physo129289;constitutive=1;rank=2 scaffold_7 . CDS 381409 381447 . - 0 ID=Physo129289;Parent=Physo129289;rank=1 scaffold_7 . exon 381409 381447 . - . ID=Physo129289.1;Parent=Physo129289;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 387268 388872 . + . ID=Physo129290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70115;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 387268 388872 . + . ID=Physo129290;Parent=Physo129290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 387268 388872 . + 0 ID=Physo129290;Parent=Physo129290;rank=1 scaffold_7 . exon 387268 388872 . + . ID=Physo129290.1;Parent=Physo129290;constitutive=1;rank=1 scaffold_7 . repeat_region 392308 392340 . ? . description=trf scaffold_7 . biological_region 392325 392329 0.999 - . logic_name=eponine scaffold_7 . repeat_region 392348 392406 . ? . description=trf scaffold_7 . repeat_region 392623 392679 . ? . description=trf scaffold_7 . repeat_region 392623 392708 . ? . description=trf scaffold_7 . repeat_region 392708 392790 . ? . description=trf scaffold_7 . repeat_region 393269 393307 . ? . description=trf scaffold_7 . repeat_region 393297 393383 . ? . description=trf scaffold_7 . repeat_region 393643 393696 . ? . description=trf scaffold_7 . biological_region 394439 394441 0.999 - . logic_name=eponine scaffold_7 . repeat_region 394597 394653 . ? . description=trf scaffold_7 . repeat_region 394616 394647 . ? . description=trf scaffold_7 . biological_region 395555 395556 0.999 - . logic_name=eponine scaffold_7 . biological_region 395984 395988 0.999 + . logic_name=eponine scaffold_7 . repeat_region 396227 396269 . ? . description=trf scaffold_7 . repeat_region 396227 396274 . ? . description=trf scaffold_7 ensembl protein_coding_gene 389509 393993 . + . ID=Physo129291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70116;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 389509 393993 . + . ID=Physo129291;Parent=Physo129291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 389509 391311 . + 0 ID=Physo129291;Parent=Physo129291;rank=1 scaffold_7 . exon 389509 391311 . + . ID=Physo129291.1;Parent=Physo129291;constitutive=1;rank=1 scaffold_7 . CDS 391364 391444 . + 0 ID=Physo129291;Parent=Physo129291;rank=2 scaffold_7 . exon 391364 391444 . + . ID=Physo129291.2;Parent=Physo129291;constitutive=1;rank=2 scaffold_7 . CDS 391658 391799 . + 0 ID=Physo129291;Parent=Physo129291;rank=3 scaffold_7 . exon 391658 391799 . + . ID=Physo129291.3;Parent=Physo129291;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 391964 393993 . + 0 ID=Physo129291;Parent=Physo129291;rank=4 scaffold_7 . exon 391964 393993 . + . ID=Physo129291.4;Parent=Physo129291;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 ensembl protein_coding_gene 394274 394844 . + . ID=Physo129292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70117;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 394274 394844 . + . ID=Physo129292;Parent=Physo129292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 394274 394844 . + . ID=Physo129292.1;Parent=Physo129292;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 394315 394698 . + 0 ID=Physo129292;Parent=Physo129292;rank=1 scaffold_7 ensembl protein_coding_gene 396189 396994 . + . ID=Physo129293;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70118;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 396189 396994 . + . ID=Physo129293;Parent=Physo129293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 396189 396643 . + 0 ID=Physo129293;Parent=Physo129293;rank=1 scaffold_7 . exon 396189 396643 . + . ID=Physo129293.1;Parent=Physo129293;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 396713 396821 . + 0 ID=Physo129293;Parent=Physo129293;rank=2 scaffold_7 . exon 396713 396821 . + . ID=Physo129293.2;Parent=Physo129293;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 396899 396994 . + 0 ID=Physo129293;Parent=Physo129293;rank=3 scaffold_7 . exon 396899 396994 . + . ID=Physo129293.3;Parent=Physo129293;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 398027 399246 . - . ID=Physo129294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70119;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 398027 399246 . - . ID=Physo129294;Parent=Physo129294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 398027 398069 . - 0 ID=Physo129294;Parent=Physo129294;rank=2 scaffold_7 . exon 398027 398069 . - . ID=Physo129294.2;Parent=Physo129294;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 398123 399246 . - 0 ID=Physo129294;Parent=Physo129294;rank=1 scaffold_7 . exon 398123 399246 . - . ID=Physo129294.1;Parent=Physo129294;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . repeat_region 400225 400279 . ? . description=dust scaffold_7 ensembl protein_coding_gene 402974 404176 . - . ID=Physo129295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70120;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 402974 404176 . - . ID=Physo129295;Parent=Physo129295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 402974 404176 . - 0 ID=Physo129295;Parent=Physo129295;rank=1 scaffold_7 . exon 402974 404176 . - . ID=Physo129295.1;Parent=Physo129295;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 405038 406315 . - . ID=Physo129296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70121;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 405038 406315 . - . ID=Physo129296;Parent=Physo129296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 405038 406315 . - 0 ID=Physo129296;Parent=Physo129296;rank=1 scaffold_7 . exon 405038 406315 . - . ID=Physo129296.1;Parent=Physo129296;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 406701 407986 . - . ID=Physo129297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70122;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 406701 407986 . - . ID=Physo129297;Parent=Physo129297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 406701 407547 . - 0 ID=Physo129297;Parent=Physo129297;rank=2 scaffold_7 . exon 406701 407547 . - . ID=Physo129297.2;Parent=Physo129297;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 407613 407986 . - 0 ID=Physo129297;Parent=Physo129297;rank=1 scaffold_7 . exon 407613 407986 . - . ID=Physo129297.1;Parent=Physo129297;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . biological_region 417528 417530 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 410910 413018 . - . ID=Physo129298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70123;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 410910 413018 . - . ID=Physo129298;Parent=Physo129298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 410910 413018 . - 0 ID=Physo129298;Parent=Physo129298;rank=1 scaffold_7 . exon 410910 413018 . - . ID=Physo129298.1;Parent=Physo129298;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 413378 415456 . + . ID=Physo129299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70124;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 413378 415456 . + . ID=Physo129299;Parent=Physo129299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 413378 415456 . + 0 ID=Physo129299;Parent=Physo129299;rank=1 scaffold_7 . exon 413378 415456 . + . ID=Physo129299.1;Parent=Physo129299;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 415534 417772 . - . ID=Physo129300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70125;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 415534 417772 . - . ID=Physo129300;Parent=Physo129300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 415534 417633 . - 0 ID=Physo129300;Parent=Physo129300;rank=1 scaffold_7 . exon 415534 417772 . - . ID=Physo129300.1;Parent=Physo129300;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 418073 420205 . - . ID=Physo129301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70126;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 418073 420205 . - . ID=Physo129301;Parent=Physo129301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 418073 420205 . - 0 ID=Physo129301;Parent=Physo129301;rank=1 scaffold_7 . exon 418073 420205 . - . ID=Physo129301.1;Parent=Physo129301;constitutive=1;rank=1 scaffold_7 . repeat_region 422475 422513 . ? . description=trf scaffold_7 . repeat_region 425407 425415 . ? . description=dust scaffold_7 . repeat_region 428546 428556 . ? . description=dust scaffold_7 ensembl protein_coding_gene 422944 425037 . - . ID=Physo129302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70127;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 422944 425037 . - . ID=Physo129302;Parent=Physo129302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 422944 425037 . - 0 ID=Physo129302;Parent=Physo129302;rank=1 scaffold_7 . exon 422944 425037 . - . ID=Physo129302.1;Parent=Physo129302;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 426005 428104 . - . ID=Physo129303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70128;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 426005 428104 . - . ID=Physo129303;Parent=Physo129303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 426005 428071 . - 0 ID=Physo129303;Parent=Physo129303;rank=1 scaffold_7 . exon 426005 428104 . - . ID=Physo129303.1;Parent=Physo129303;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 428686 429771 . + . ID=Physo129304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70129;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 428686 429771 . + . ID=Physo129304;Parent=Physo129304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 428686 429771 . + . ID=Physo129304.1;Parent=Physo129304;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 428781 429581 . + 0 ID=Physo129304;Parent=Physo129304;rank=1 scaffold_7 . biological_region 431504 431508 0.999 + . logic_name=eponine scaffold_7 . biological_region 431585 431589 0.999 + . logic_name=eponine scaffold_7 . biological_region 437918 437922 0.999 - . logic_name=eponine scaffold_7 . biological_region 437940 437941 0.999 - . logic_name=eponine scaffold_7 . biological_region 437962 437965 0.999 - . logic_name=eponine scaffold_7 . biological_region 437971 437974 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 430681 431748 . - . ID=Physo108369;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70014;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 430681 431748 . - . ID=Physo108369;Parent=Physo108369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 430681 431748 . - . ID=Physo108369.1;Parent=Physo108369;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 . CDS 430783 431748 . - 0 ID=Physo108369;Parent=Physo108369;rank=1 scaffold_7 ensembl protein_coding_gene 429976 430714 . + . ID=Physo129305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70130;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 429976 430714 . + . ID=Physo129305;Parent=Physo129305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 429976 430677 . + 0 ID=Physo129305;Parent=Physo129305;rank=1 scaffold_7 . exon 429976 430714 . + . ID=Physo129305.1;Parent=Physo129305;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 . repeat_region 440416 440428 . ? . description=dust scaffold_7 . repeat_region 441313 441325 . ? . description=dust scaffold_7 . repeat_region 446006 446030 . ? . description=trf scaffold_7 . repeat_region 448119 448128 . ? . description=dust scaffold_7 . biological_region 451211 451219 0.999 + . logic_name=eponine scaffold_7 . biological_region 451324 451329 0.999 + . logic_name=eponine scaffold_7 . biological_region 451336 451339 0.999 - . logic_name=eponine scaffold_7 . biological_region 451345 451355 0.999 + . logic_name=eponine scaffold_7 . repeat_region 456875 457017 . - . description=GypsyPi-1c_I-int scaffold_7 . repeat_region 457490 459454 . - . description=GypsyPi-1c_I-int scaffold_7 . biological_region 458028 458032 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 452896 453252 . + . ID=Physo111781;biotype=protein_coding;external_name=estExt_Genewise1.C_70023;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 452896 453252 . + . ID=Physo111781;Parent=Physo111781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 452896 453252 . + . ID=Physo111781.1;Parent=Physo111781;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 453161 453250 . + 0 ID=Physo111781;Parent=Physo111781;rank=1 scaffold_7 ensembl protein_coding_gene 451008 451757 . - . ID=Physo129307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70132;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 451008 451757 . - . ID=Physo129307;Parent=Physo129307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 451008 451757 . - 0 ID=Physo129307;Parent=Physo129307;rank=1 scaffold_7 . exon 451008 451757 . - . ID=Physo129307.1;Parent=Physo129307;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 456913 458486 . - . ID=Physo129308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70133;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 456913 458486 . - . ID=Physo129308;Parent=Physo129308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 456913 457260 . - 0 ID=Physo129308;Parent=Physo129308;rank=3 scaffold_7 . exon 456913 457260 . - . ID=Physo129308.3;Parent=Physo129308;constitutive=1;rank=3 scaffold_7 . CDS 457463 457644 . - 0 ID=Physo129308;Parent=Physo129308;rank=2 scaffold_7 . exon 457463 457644 . - . ID=Physo129308.2;Parent=Physo129308;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 457886 458486 . - 0 ID=Physo129308;Parent=Physo129308;rank=1 scaffold_7 . exon 457886 458486 . - . ID=Physo129308.1;Parent=Physo129308;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . repeat_region 460432 460696 . ? . description=trf scaffold_7 . repeat_region 463934 463943 . ? . description=dust scaffold_7 . repeat_region 464255 464304 . ? . description=dust scaffold_7 . repeat_region 466214 466228 . ? . description=dust scaffold_7 . repeat_region 467273 469323 . ? . description=dust scaffold_7 ensembl protein_coding_gene 460017 462341 . - . ID=Physo129309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70134;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 460017 462341 . - . ID=Physo129309;Parent=Physo129309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 460017 461095 . - 0 ID=Physo129309;Parent=Physo129309;rank=3 scaffold_7 . exon 460017 461095 . - . ID=Physo129309.3;Parent=Physo129309;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 461369 461811 . - 0 ID=Physo129309;Parent=Physo129309;rank=2 scaffold_7 . exon 461369 461811 . - . ID=Physo129309.2;Parent=Physo129309;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 461956 462341 . - 0 ID=Physo129309;Parent=Physo129309;rank=1 scaffold_7 . exon 461956 462341 . - . ID=Physo129309.1;Parent=Physo129309;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . repeat_region 474433 479357 . ? . description=dust scaffold_7 . repeat_region 482841 486469 . ? . description=dust scaffold_7 . repeat_region 487167 487450 . ? . description=dust scaffold_7 . repeat_region 488562 488611 . ? . description=dust scaffold_7 . repeat_region 491321 491625 . + . description=GypsyPi-1c_LTR scaffold_7 . repeat_region 491654 493447 . + . description=GypsyPi-1c_I-int scaffold_7 . biological_region 491911 491911 0.999 - . logic_name=eponine scaffold_7 . repeat_region 492656 492726 . ? . description=trf scaffold_7 . repeat_region 493178 493414 . ? . description=trf scaffold_7 . repeat_region 496333 496570 . + . description=GypsyPi-1c_LTR scaffold_7 . repeat_region 498867 498880 . ? . description=dust scaffold_7 . repeat_region 499228 499287 . ? . description=dust scaffold_7 . repeat_region 503286 503301 . ? . description=dust scaffold_7 . repeat_region 505461 505536 . ? . description=dust scaffold_7 ensembl tRNA_gene 499139 499211 . - . ID=EPrPSOG00000000161;biotype=tRNA;description=tRNA-Lys for anticodon CUU [Source:TRNASCAN_SE%3BAcc:tRNA-Lys];external_name=tRNA-Lys;logic_name=ncrna_eg scaffold_7 ensembl transcript 499139 499211 . - . ID=EPrPSOT00000000161;Parent=EPrPSOG00000000161;biotype=tRNA;logic_name=ncrna_eg scaffold_7 . exon 499139 499211 . - . ID=EPrPSOE00000000161;Parent=EPrPSOT00000000161;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 503851 505536 . - . ID=Physo129310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70135;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 503851 505536 . - . ID=Physo129310;Parent=Physo129310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 503851 505166 . - . ID=Physo129310.2;Parent=Physo129310;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_7 . CDS 503988 505166 . - 0 ID=Physo129310;Parent=Physo129310;rank=2 scaffold_7 . CDS 505253 505420 . - 0 ID=Physo129310;Parent=Physo129310;rank=1 scaffold_7 . exon 505253 505536 . - . ID=Physo129310.1;Parent=Physo129310;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 507214 510202 . + . ID=Physo129311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70136;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 507214 510202 . + . ID=Physo129311;Parent=Physo129311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 507214 507476 . + 0 ID=Physo129311;Parent=Physo129311;rank=1 scaffold_7 . exon 507214 507476 . + . ID=Physo129311.1;Parent=Physo129311;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 507574 510202 . + 0 ID=Physo129311;Parent=Physo129311;rank=2 scaffold_7 . exon 507574 510202 . + . ID=Physo129311.2;Parent=Physo129311;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . biological_region 516024 516025 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 518138 521078 . + . ID=Physo129312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70137;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 518138 521078 . + . ID=Physo129312;Parent=Physo129312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 518138 518200 . + 0 ID=Physo129312;Parent=Physo129312;rank=1 scaffold_7 . exon 518138 518200 . + . ID=Physo129312.1;Parent=Physo129312;constitutive=1;rank=1 scaffold_7 . CDS 518333 519345 . + 0 ID=Physo129312;Parent=Physo129312;rank=2 scaffold_7 . exon 518333 519345 . + . ID=Physo129312.2;Parent=Physo129312;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 519415 519858 . + 0 ID=Physo129312;Parent=Physo129312;rank=3 scaffold_7 . CDS 519981 520416 . + 0 ID=Physo129312;Parent=Physo129312;rank=4 scaffold_7 . CDS 520485 521078 . + 0 ID=Physo129312;Parent=Physo129312;rank=5 scaffold_7 . repeat_region 521799 521808 . ? . description=dust scaffold_7 . exon 519415 519858 . + . ID=Physo129312.3;Parent=Physo129312;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_7 . exon 519981 520416 . + . ID=Physo129312.4;Parent=Physo129312;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . exon 520485 521078 . + . ID=Physo129312.5;Parent=Physo129312;constitutive=1;rank=5 scaffold_7 ensembl protein_coding_gene 523315 524349 . - . ID=Physo129313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70138;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 523315 524349 . - . ID=Physo129313;Parent=Physo129313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 523315 523857 . - 0 ID=Physo129313;Parent=Physo129313;rank=2 scaffold_7 . exon 523315 523857 . - . ID=Physo129313.2;Parent=Physo129313;constitutive=1;rank=2 scaffold_7 . CDS 523926 524348 . - 0 ID=Physo129313;Parent=Physo129313;rank=1 scaffold_7 . exon 523926 524349 . - . ID=Physo129313.1;Parent=Physo129313;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 525704 526685 . - . ID=Physo129314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70139;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 525704 526685 . - . ID=Physo129314;Parent=Physo129314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 525704 526240 . - 0 ID=Physo129314;Parent=Physo129314;rank=2 scaffold_7 . exon 525704 526240 . - . ID=Physo129314.2;Parent=Physo129314;constitutive=1;rank=2 scaffold_7 . CDS 526323 526685 . - 0 ID=Physo129314;Parent=Physo129314;rank=1 scaffold_7 . exon 526323 526685 . - . ID=Physo129314.1;Parent=Physo129314;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 528439 529245 . + . ID=Physo129315;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70140;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 528439 529245 . + . ID=Physo129315;Parent=Physo129315;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 528439 529245 . + 0 ID=Physo129315;Parent=Physo129315;rank=1 scaffold_7 . exon 528439 529245 . + . ID=Physo129315.1;Parent=Physo129315;constitutive=1;rank=1 scaffold_7 . biological_region 530172 530175 0.999 + . logic_name=eponine scaffold_7 . biological_region 531795 531798 0.999 + . logic_name=eponine scaffold_7 . biological_region 531796 531797 0.999 - . logic_name=eponine scaffold_7 . biological_region 531855 531859 0.999 - . logic_name=eponine scaffold_7 . biological_region 531877 531884 0.999 + . logic_name=eponine scaffold_7 . biological_region 531911 531916 0.999 + . logic_name=eponine scaffold_7 . biological_region 531930 531935 0.999 + . logic_name=eponine scaffold_7 . biological_region 531986 531991 0.999 - . logic_name=eponine scaffold_7 . repeat_region 532884 532921 . ? . description=trf scaffold_7 . repeat_region 534001 534075 . ? . description=trf scaffold_7 . repeat_region 534001 534075 . ? . description=trf scaffold_7 . repeat_region 534001 534087 . ? . description=trf scaffold_7 . repeat_region 534005 534078 . ? . description=trf scaffold_7 . repeat_region 534016 534079 . ? . description=trf scaffold_7 . biological_region 535121 535125 0.999 + . logic_name=eponine scaffold_7 . biological_region 537932 537935 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 530410 532212 . + . ID=Physo108370;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70015;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 530410 532212 . + . ID=Physo108370;Parent=Physo108370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 530410 532212 . + 0 ID=Physo108370;Parent=Physo108370;rank=1 scaffold_7 . exon 530410 532212 . + . ID=Physo108370.1;Parent=Physo108370;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 532422 534127 . + . ID=Physo129317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70142;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 532422 534127 . + . ID=Physo129317;Parent=Physo129317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 532422 533156 . + 0 ID=Physo129317;Parent=Physo129317;rank=1 scaffold_7 . exon 532422 533156 . + . ID=Physo129317.1;Parent=Physo129317;constitutive=1;rank=1 scaffold_7 . CDS 533233 533360 . + 0 ID=Physo129317;Parent=Physo129317;rank=2 scaffold_7 . exon 533233 533360 . + . ID=Physo129317.2;Parent=Physo129317;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 533449 534127 . + 0 ID=Physo129317;Parent=Physo129317;rank=3 scaffold_7 . exon 533449 534127 . + . ID=Physo129317.3;Parent=Physo129317;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 ensembl protein_coding_gene 535159 536430 . + . ID=Physo129319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70144;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 535159 536430 . + . ID=Physo129319;Parent=Physo129319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 535159 535388 . + . ID=Physo129319.1;Parent=Physo129319;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 535169 535388 . + 0 ID=Physo129319;Parent=Physo129319;rank=1 scaffold_7 . CDS 535460 535575 . + 0 ID=Physo129319;Parent=Physo129319;rank=2 scaffold_7 . exon 535460 535575 . + . ID=Physo129319.2;Parent=Physo129319;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 535657 535710 . + 0 ID=Physo129319;Parent=Physo129319;rank=3 scaffold_7 . exon 535657 535710 . + . ID=Physo129319.3;Parent=Physo129319;constitutive=1;rank=3 scaffold_7 . CDS 535782 535830 . + 0 ID=Physo129319;Parent=Physo129319;rank=4 scaffold_7 . exon 535782 535830 . + . ID=Physo129319.4;Parent=Physo129319;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_7 . CDS 535910 536430 . + 0 ID=Physo129319;Parent=Physo129319;rank=5 scaffold_7 . exon 535910 536430 . + . ID=Physo129319.5;Parent=Physo129319;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 ensembl protein_coding_gene 536739 537706 . - . ID=Physo129320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70145;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 536739 537706 . - . ID=Physo129320;Parent=Physo129320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 536739 537059 . - 0 ID=Physo129320;Parent=Physo129320;rank=2 scaffold_7 . exon 536739 537059 . - . ID=Physo129320.2;Parent=Physo129320;constitutive=1;rank=2 scaffold_7 . CDS 537128 537706 . - 0 ID=Physo129320;Parent=Physo129320;rank=1 scaffold_7 . exon 537128 537706 . - . ID=Physo129320.1;Parent=Physo129320;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 538354 539337 . - . ID=Physo129321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70146;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 538354 539337 . - . ID=Physo129321;Parent=Physo129321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 538354 539337 . - 0 ID=Physo129321;Parent=Physo129321;rank=1 scaffold_7 . exon 538354 539337 . - . ID=Physo129321.1;Parent=Physo129321;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 534215 535036 . - . ID=Physo155718;biotype=protein_coding;external_name=C_scaffold_7000047;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 534215 535036 . - . ID=Physo155718;Parent=Physo155718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 534215 535036 . - 0 ID=Physo155718;Parent=Physo155718;rank=1 scaffold_7 . exon 534215 535036 . - . ID=Physo155718.1;Parent=Physo155718;constitutive=1;rank=1 scaffold_7 . repeat_region 540166 540176 . ? . description=dust scaffold_7 . repeat_region 540606 540615 . ? . description=dust scaffold_7 ensembl protein_coding_gene 543331 543915 . + . ID=Physo111793;biotype=protein_coding;external_name=estExt_Genewise1.C_70035;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 543331 543915 . + . ID=Physo111793;Parent=Physo111793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 543331 543383 . + . ID=Physo111793.1;Parent=Physo111793;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 543362 543383 . + 0 ID=Physo111793;Parent=Physo111793;rank=1 scaffold_7 . CDS 543546 543757 . + 0 ID=Physo111793;Parent=Physo111793;rank=2 scaffold_7 . exon 543546 543915 . + . ID=Physo111793.2;Parent=Physo111793;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_7 ensembl protein_coding_gene 547704 548563 . + . ID=Physo111798;biotype=protein_coding;external_name=estExt_Genewise1.C_70040;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 547704 548563 . + . ID=Physo111798;Parent=Physo111798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 547704 547819 . + . ID=Physo111798.1;Parent=Physo111798;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 . CDS 547749 547819 . + 0 ID=Physo111798;Parent=Physo111798;rank=1 scaffold_7 . CDS 548032 548180 . + 0 ID=Physo111798;Parent=Physo111798;rank=2 scaffold_7 . exon 548032 548180 . + . ID=Physo111798.2;Parent=Physo111798;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 548268 548563 . + 0 ID=Physo111798;Parent=Physo111798;rank=3 scaffold_7 . exon 548268 548563 . + . ID=Physo111798.3;Parent=Physo111798;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 ensembl protein_coding_gene 545348 546310 . + . ID=Physo129324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70149;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 545348 546310 . + . ID=Physo129324;Parent=Physo129324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 545348 545903 . + 0 ID=Physo129324;Parent=Physo129324;rank=1 scaffold_7 . exon 545348 545903 . + . ID=Physo129324.1;Parent=Physo129324;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 545984 546062 . + 0 ID=Physo129324;Parent=Physo129324;rank=2 scaffold_7 . exon 545984 546062 . + . ID=Physo129324.2;Parent=Physo129324;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 546124 546310 . + 0 ID=Physo129324;Parent=Physo129324;rank=3 scaffold_7 . exon 546124 546310 . + . ID=Physo129324.3;Parent=Physo129324;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 ensembl protein_coding_gene 546443 547426 . - . ID=Physo129325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70150;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 546443 547426 . - . ID=Physo129325;Parent=Physo129325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 546443 546694 . - 0 ID=Physo129325;Parent=Physo129325;rank=2 scaffold_7 . exon 546443 546694 . - . ID=Physo129325.2;Parent=Physo129325;constitutive=1;rank=2 scaffold_7 . CDS 546770 547426 . - 0 ID=Physo129325;Parent=Physo129325;rank=1 scaffold_7 . exon 546770 547426 . - . ID=Physo129325.1;Parent=Physo129325;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 542326 543156 . - . ID=Physo155720;biotype=protein_coding;external_name=C_scaffold_7000049;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 542326 543156 . - . ID=Physo155720;Parent=Physo155720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 542326 542367 . - 0 ID=Physo155720;Parent=Physo155720;rank=4 scaffold_7 . exon 542326 542367 . - . ID=Physo155720.4;Parent=Physo155720;constitutive=1;rank=4 scaffold_7 . CDS 542445 542568 . - 0 ID=Physo155720;Parent=Physo155720;rank=3 scaffold_7 . exon 542445 542568 . - . ID=Physo155720.3;Parent=Physo155720;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 542642 542876 . - 0 ID=Physo155720;Parent=Physo155720;rank=2 scaffold_7 . exon 542642 542876 . - . ID=Physo155720.2;Parent=Physo155720;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 542997 543156 . - 0 ID=Physo155720;Parent=Physo155720;rank=1 scaffold_7 . exon 542997 543156 . - . ID=Physo155720.1;Parent=Physo155720;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 544115 545055 . - . ID=Physo155722;biotype=protein_coding;external_name=C_scaffold_7000051;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 544115 545055 . - . ID=Physo155722;Parent=Physo155722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 544115 544796 . - 0 ID=Physo155722;Parent=Physo155722;rank=3 scaffold_7 . exon 544115 544796 . - . ID=Physo155722.3;Parent=Physo155722;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 544884 544960 . - 0 ID=Physo155722;Parent=Physo155722;rank=2 scaffold_7 . exon 544884 544960 . - . ID=Physo155722.2;Parent=Physo155722;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 545047 545055 . - 0 ID=Physo155722;Parent=Physo155722;rank=1 scaffold_7 . exon 545047 545055 . - . ID=Physo155722.1;Parent=Physo155722;constitutive=1;rank=1 scaffold_7 . biological_region 555503 555506 0.999 - . logic_name=eponine scaffold_7 . biological_region 555563 555566 0.999 + . logic_name=eponine scaffold_7 . biological_region 555923 555924 0.999 - . logic_name=eponine scaffold_7 . biological_region 555955 555957 0.999 - . logic_name=eponine scaffold_7 . biological_region 556006 556011 0.999 + . logic_name=eponine scaffold_7 . biological_region 556125 556125 0.999 - . logic_name=eponine scaffold_7 . repeat_region 556246 556283 . ? . description=trf scaffold_7 . biological_region 556346 556348 0.999 + . logic_name=eponine scaffold_7 . biological_region 556867 556870 0.999 + . logic_name=eponine scaffold_7 . biological_region 558418 558421 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 552532 553344 . - . ID=Physo129327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70152;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 552532 553344 . - . ID=Physo129327;Parent=Physo129327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 552532 552693 . - 0 ID=Physo129327;Parent=Physo129327;rank=3 scaffold_7 . exon 552532 552693 . - . ID=Physo129327.3;Parent=Physo129327;constitutive=1;rank=3 scaffold_7 . CDS 552780 553131 . - 0 ID=Physo129327;Parent=Physo129327;rank=2 scaffold_7 . exon 552780 553131 . - . ID=Physo129327.2;Parent=Physo129327;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 553277 553344 . - 0 ID=Physo129327;Parent=Physo129327;rank=1 scaffold_7 . exon 553277 553344 . - . ID=Physo129327.1;Parent=Physo129327;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 555137 556462 . - . ID=Physo129328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70153;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 555137 556462 . - . ID=Physo129328;Parent=Physo129328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 555137 556462 . - 0 ID=Physo129328;Parent=Physo129328;rank=1 scaffold_7 . exon 555137 556462 . - . ID=Physo129328.1;Parent=Physo129328;constitutive=1;rank=1 scaffold_7 . repeat_region 562419 562426 . ? . description=dust scaffold_7 . repeat_region 563757 563764 . ? . description=dust scaffold_7 ensembl protein_coding_gene 563986 564501 . + . ID=Physo129330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70155;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 563986 564501 . + . ID=Physo129330;Parent=Physo129330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 563986 564501 . + 0 ID=Physo129330;Parent=Physo129330;rank=1 scaffold_7 . exon 563986 564501 . + . ID=Physo129330.1;Parent=Physo129330;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 564669 566620 . - . ID=Physo129331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70156;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 564669 566620 . - . ID=Physo129331;Parent=Physo129331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 564669 566456 . - 0 ID=Physo129331;Parent=Physo129331;rank=2 scaffold_7 . exon 564669 566456 . - . ID=Physo129331.2;Parent=Physo129331;constitutive=1;rank=2 scaffold_7 . CDS 566542 566592 . - 0 ID=Physo129331;Parent=Physo129331;rank=1 scaffold_7 . exon 566542 566620 . - . ID=Physo129331.1;Parent=Physo129331;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 566771 570265 . - . ID=Physo129332;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70157;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 566771 570265 . - . ID=Physo129332;Parent=Physo129332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 566771 570265 . - . ID=Physo129332.1;Parent=Physo129332;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 . CDS 566825 570265 . - 0 ID=Physo129332;Parent=Physo129332;rank=1 scaffold_7 ensembl protein_coding_gene 558953 562261 . - . ID=Physo155727;biotype=protein_coding;external_name=C_scaffold_7000056;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 558953 562261 . - . ID=Physo155727;Parent=Physo155727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 558953 559479 . - 0 ID=Physo155727;Parent=Physo155727;rank=9 scaffold_7 . exon 558953 559479 . - . ID=Physo155727.9;Parent=Physo155727;constitutive=1;ensembl_phase=1;rank=9 scaffold_7 . CDS 559536 559605 . - 0 ID=Physo155727;Parent=Physo155727;rank=8 scaffold_7 . exon 559536 559605 . - . ID=Physo155727.8;Parent=Physo155727;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_7 . CDS 559630 559873 . - 0 ID=Physo155727;Parent=Physo155727;rank=7 scaffold_7 . exon 559630 559873 . - . ID=Physo155727.7;Parent=Physo155727;constitutive=1;ensembl_phase=2;rank=7 scaffold_7 . CDS 560213 560528 . - 0 ID=Physo155727;Parent=Physo155727;rank=6 scaffold_7 . exon 560213 560528 . - . ID=Physo155727.6;Parent=Physo155727;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_7 . CDS 560676 561030 . - 0 ID=Physo155727;Parent=Physo155727;rank=5 scaffold_7 . exon 560676 561030 . - . ID=Physo155727.5;Parent=Physo155727;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_7 . CDS 561145 561474 . - 0 ID=Physo155727;Parent=Physo155727;rank=4 scaffold_7 . exon 561145 561474 . - . ID=Physo155727.4;Parent=Physo155727;constitutive=1;rank=4 scaffold_7 . CDS 561542 561649 . - 0 ID=Physo155727;Parent=Physo155727;rank=3 scaffold_7 . exon 561542 561649 . - . ID=Physo155727.3;Parent=Physo155727;constitutive=1;rank=3 scaffold_7 . CDS 561712 561747 . - 0 ID=Physo155727;Parent=Physo155727;rank=2 scaffold_7 . exon 561712 561747 . - . ID=Physo155727.2;Parent=Physo155727;constitutive=1;rank=2 scaffold_7 . CDS 562130 562261 . - 0 ID=Physo155727;Parent=Physo155727;rank=1 scaffold_7 . exon 562130 562261 . - . ID=Physo155727.1;Parent=Physo155727;constitutive=1;rank=1 scaffold_7 . biological_region 569703 569704 0.999 + . logic_name=eponine scaffold_7 . biological_region 569884 569887 0.999 + . logic_name=eponine scaffold_7 . biological_region 569998 570001 0.999 + . logic_name=eponine scaffold_7 . biological_region 572279 572283 0.999 + . logic_name=eponine scaffold_7 . repeat_region 577491 577526 . ? . description=trf scaffold_7 ensembl protein_coding_gene 573767 574429 . + . ID=Physo108371;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70016;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 573767 574429 . + . ID=Physo108371;Parent=Physo108371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 573767 573791 . + . ID=Physo108371.1;Parent=Physo108371;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . exon 573874 574429 . + . ID=Physo108371.2;Parent=Physo108371;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_7 . CDS 573887 574249 . + 0 ID=Physo108371;Parent=Physo108371;rank=1 scaffold_7 ensembl protein_coding_gene 571851 573532 . - . ID=Physo129333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70158;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 571851 573532 . - . ID=Physo129333;Parent=Physo129333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 571851 572505 . - 0 ID=Physo129333;Parent=Physo129333;rank=5 scaffold_7 . exon 571851 572505 . - . ID=Physo129333.5;Parent=Physo129333;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 572585 572746 . - 0 ID=Physo129333;Parent=Physo129333;rank=4 scaffold_7 . exon 572585 572746 . - . ID=Physo129333.4;Parent=Physo129333;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_7 . CDS 572796 572915 . - 0 ID=Physo129333;Parent=Physo129333;rank=3 scaffold_7 . exon 572796 572915 . - . ID=Physo129333.3;Parent=Physo129333;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_7 . CDS 573001 573158 . - 0 ID=Physo129333;Parent=Physo129333;rank=2 scaffold_7 . exon 573001 573158 . - . ID=Physo129333.2;Parent=Physo129333;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 573236 573472 . - 0 ID=Physo129333;Parent=Physo129333;rank=1 scaffold_7 . exon 573236 573532 . - . ID=Physo129333.1;Parent=Physo129333;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 574978 577210 . + . ID=Physo129335;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70160;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 574978 577210 . + . ID=Physo129335;Parent=Physo129335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 574978 575142 . + . ID=Physo129335.1;Parent=Physo129335;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 575008 575142 . + 0 ID=Physo129335;Parent=Physo129335;rank=1 scaffold_7 . CDS 575213 576103 . + 0 ID=Physo129335;Parent=Physo129335;rank=2 scaffold_7 . exon 575213 576103 . + . ID=Physo129335.2;Parent=Physo129335;constitutive=1;rank=2 scaffold_7 . CDS 576179 576468 . + 0 ID=Physo129335;Parent=Physo129335;rank=3 scaffold_7 . exon 576179 576468 . + . ID=Physo129335.3;Parent=Physo129335;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_7 . CDS 576548 576677 . + 0 ID=Physo129335;Parent=Physo129335;rank=4 scaffold_7 . exon 576548 576677 . + . ID=Physo129335.4;Parent=Physo129335;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 576849 576955 . + 0 ID=Physo129335;Parent=Physo129335;rank=5 scaffold_7 . exon 576849 576955 . + . ID=Physo129335.5;Parent=Physo129335;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_7 . CDS 577027 577210 . + 0 ID=Physo129335;Parent=Physo129335;rank=6 scaffold_7 . exon 577027 577210 . + . ID=Physo129335.6;Parent=Physo129335;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 ensembl protein_coding_gene 577522 579636 . - . ID=Physo129336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70161;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 577522 579636 . - . ID=Physo129336;Parent=Physo129336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 577522 579636 . - 0 ID=Physo129336;Parent=Physo129336;rank=1 scaffold_7 . exon 577522 579636 . - . ID=Physo129336.1;Parent=Physo129336;constitutive=1;rank=1 scaffold_7 . repeat_region 579179 579235 . ? . description=dust scaffold_7 . repeat_region 580362 580413 . ? . description=dust scaffold_7 . repeat_region 580521 580528 . ? . description=dust scaffold_7 . repeat_region 583699 583717 . ? . description=dust scaffold_7 . biological_region 590563 590567 0.999 + . logic_name=eponine scaffold_7 . repeat_region 591318 591374 . ? . description=trf scaffold_7 . biological_region 591513 591513 0.999 - . logic_name=eponine scaffold_7 . biological_region 593461 593463 0.999 + . logic_name=eponine scaffold_7 . repeat_region 593514 593543 . ? . description=trf scaffold_7 . biological_region 593828 593829 0.999 - . logic_name=eponine scaffold_7 . repeat_region 597031 597116 . ? . description=trf scaffold_7 . biological_region 597389 597394 0.999 + . logic_name=eponine scaffold_7 . repeat_region 597559 597652 . ? . description=trf scaffold_7 ensembl protein_coding_gene 590179 590904 . - . ID=Physo129337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70162;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 590179 590904 . - . ID=Physo129337;Parent=Physo129337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 590179 590904 . - 0 ID=Physo129337;Parent=Physo129337;rank=1 scaffold_7 . exon 590179 590904 . - . ID=Physo129337.1;Parent=Physo129337;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 591831 593572 . + . ID=Physo129338;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70163;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 591831 593572 . + . ID=Physo129338;Parent=Physo129338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 591831 591861 . + 0 ID=Physo129338;Parent=Physo129338;rank=1 scaffold_7 . exon 591831 591861 . + . ID=Physo129338.1;Parent=Physo129338;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 591971 592284 . + 0 ID=Physo129338;Parent=Physo129338;rank=2 scaffold_7 . exon 591971 592284 . + . ID=Physo129338.2;Parent=Physo129338;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 592314 592460 . + 0 ID=Physo129338;Parent=Physo129338;rank=3 scaffold_7 . exon 592314 592460 . + . ID=Physo129338.3;Parent=Physo129338;constitutive=1;rank=3 scaffold_7 . CDS 592771 592848 . + 0 ID=Physo129338;Parent=Physo129338;rank=4 scaffold_7 . exon 592771 592848 . + . ID=Physo129338.4;Parent=Physo129338;constitutive=1;rank=4 scaffold_7 . CDS 592898 593044 . + 0 ID=Physo129338;Parent=Physo129338;rank=5 scaffold_7 . exon 592898 593044 . + . ID=Physo129338.5;Parent=Physo129338;constitutive=1;rank=5 scaffold_7 . CDS 593168 593246 . + 0 ID=Physo129338;Parent=Physo129338;rank=6 scaffold_7 . exon 593168 593246 . + . ID=Physo129338.6;Parent=Physo129338;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_7 . CDS 593313 593572 . + 0 ID=Physo129338;Parent=Physo129338;rank=7 scaffold_7 . exon 593313 593572 . + . ID=Physo129338.7;Parent=Physo129338;constitutive=1;ensembl_phase=1;rank=7 scaffold_7 ensembl protein_coding_gene 595379 596693 . + . ID=Physo129339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70164;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 595379 596693 . + . ID=Physo129339;Parent=Physo129339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 595379 595846 . + . ID=Physo129339.1;Parent=Physo129339;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 595391 595846 . + 0 ID=Physo129339;Parent=Physo129339;rank=1 scaffold_7 . CDS 595883 595993 . + 0 ID=Physo129339;Parent=Physo129339;rank=2 scaffold_7 . exon 595883 595993 . + . ID=Physo129339.2;Parent=Physo129339;constitutive=1;rank=2 scaffold_7 . CDS 596065 596212 . + 0 ID=Physo129339;Parent=Physo129339;rank=3 scaffold_7 . exon 596065 596212 . + . ID=Physo129339.3;Parent=Physo129339;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 596273 596392 . + 0 ID=Physo129339;Parent=Physo129339;rank=4 scaffold_7 . exon 596273 596392 . + . ID=Physo129339.4;Parent=Physo129339;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 596671 596693 . + 0 ID=Physo129339;Parent=Physo129339;rank=5 scaffold_7 . exon 596671 596693 . + . ID=Physo129339.5;Parent=Physo129339;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 . repeat_region 599138 599145 . ? . description=dust scaffold_7 . repeat_region 599812 599826 . ? . description=dust scaffold_7 . repeat_region 602249 602262 . ? . description=dust scaffold_7 . repeat_region 605209 605216 . ? . description=dust scaffold_7 . repeat_region 607957 608028 . + . description=GypsyPi-1c_I-int scaffold_7 . biological_region 608576 608576 0.999 + . logic_name=eponine scaffold_7 . biological_region 608964 608966 0.999 - . logic_name=eponine scaffold_7 . biological_region 608986 608986 0.999 - . logic_name=eponine scaffold_7 . biological_region 608999 609007 0.999 - . logic_name=eponine scaffold_7 . biological_region 609041 609043 0.999 + . logic_name=eponine scaffold_7 . biological_region 609188 609192 0.999 + . logic_name=eponine scaffold_7 . biological_region 610630 610632 0.999 - . logic_name=eponine scaffold_7 . biological_region 612866 612868 0.999 - . logic_name=eponine scaffold_7 . repeat_region 614269 614376 . ? . description=trf scaffold_7 . repeat_region 614638 614681 . ? . description=trf scaffold_7 . biological_region 615051 615054 0.999 + . logic_name=eponine scaffold_7 . repeat_region 616745 616769 . ? . description=trf scaffold_7 . biological_region 618206 618207 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 609166 612136 . + . ID=Physo129340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70165;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 609166 612136 . + . ID=Physo129340;Parent=Physo129340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 609166 609245 . + 0 ID=Physo129340;Parent=Physo129340;rank=1 scaffold_7 . exon 609166 609245 . + . ID=Physo129340.1;Parent=Physo129340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 609387 610035 . + 0 ID=Physo129340;Parent=Physo129340;rank=2 scaffold_7 . exon 609387 610035 . + . ID=Physo129340.2;Parent=Physo129340;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 610082 610185 . + 0 ID=Physo129340;Parent=Physo129340;rank=3 scaffold_7 . exon 610082 610185 . + . ID=Physo129340.3;Parent=Physo129340;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_7 . CDS 610357 610459 . + 0 ID=Physo129340;Parent=Physo129340;rank=4 scaffold_7 . exon 610357 610459 . + . ID=Physo129340.4;Parent=Physo129340;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 610552 612089 . + 0 ID=Physo129340;Parent=Physo129340;rank=5 scaffold_7 . exon 610552 612089 . + . ID=Physo129340.5;Parent=Physo129340;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_7 . CDS 612130 612136 . + 0 ID=Physo129340;Parent=Physo129340;rank=6 scaffold_7 . exon 612130 612136 . + . ID=Physo129340.6;Parent=Physo129340;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 ensembl protein_coding_gene 613518 613910 . - . ID=Physo129341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70166;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 613518 613910 . - . ID=Physo129341;Parent=Physo129341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 613518 613910 . - 0 ID=Physo129341;Parent=Physo129341;rank=1 scaffold_7 . exon 613518 613910 . - . ID=Physo129341.1;Parent=Physo129341;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 614819 615580 . + . ID=Physo129342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70167;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 614819 615580 . + . ID=Physo129342;Parent=Physo129342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 614819 614823 . + 0 ID=Physo129342;Parent=Physo129342;rank=1 scaffold_7 . exon 614819 614823 . + . ID=Physo129342.1;Parent=Physo129342;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 614884 614894 . + 0 ID=Physo129342;Parent=Physo129342;rank=2 scaffold_7 . exon 614884 614894 . + . ID=Physo129342.2;Parent=Physo129342;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 615058 615215 . + 0 ID=Physo129342;Parent=Physo129342;rank=3 scaffold_7 . exon 615058 615215 . + . ID=Physo129342.3;Parent=Physo129342;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 615293 615580 . + 0 ID=Physo129342;Parent=Physo129342;rank=4 scaffold_7 . exon 615293 615580 . + . ID=Physo129342.4;Parent=Physo129342;constitutive=1;rank=4 scaffold_7 . repeat_region 619272 619279 . ? . description=dust scaffold_7 . repeat_region 619386 619437 . ? . description=dust scaffold_7 ensembl protein_coding_gene 627308 628370 . + . ID=Physo108372;biotype=protein_coding;description=cAMP-dependent protein kinase catalytic subunit 2 [Source:UniProtKB/TrEMBL%3BAcc:B8XSP0];external_name=estExt_fgenesh1_pm.C_70017;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 627308 628370 . + . ID=Physo108372;Parent=Physo108372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 627308 628291 . + 0 ID=Physo108372;Parent=Physo108372;rank=1 scaffold_7 . exon 627308 628370 . + . ID=Physo108372.1;Parent=Physo108372;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 620156 620737 . + . ID=Physo129343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70168;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 620156 620737 . + . ID=Physo129343;Parent=Physo129343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 620156 620737 . + . ID=Physo129343.1;Parent=Physo129343;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 620158 620736 . + 0 ID=Physo129343;Parent=Physo129343;rank=1 scaffold_7 ensembl protein_coding_gene 623913 625555 . - . ID=Physo129346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70171;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 623913 625555 . - . ID=Physo129346;Parent=Physo129346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 623913 624134 . - 0 ID=Physo129346;Parent=Physo129346;rank=2 scaffold_7 . exon 623913 624134 . - . ID=Physo129346.2;Parent=Physo129346;constitutive=1;rank=2 scaffold_7 . CDS 624206 625555 . - 0 ID=Physo129346;Parent=Physo129346;rank=1 scaffold_7 . exon 624206 625555 . - . ID=Physo129346.1;Parent=Physo129346;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 625881 627167 . + . ID=Physo129347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70172;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 625881 627167 . + . ID=Physo129347;Parent=Physo129347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 625881 625956 . + 0 ID=Physo129347;Parent=Physo129347;rank=1 scaffold_7 . exon 625881 625956 . + . ID=Physo129347.1;Parent=Physo129347;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 626028 627166 . + 0 ID=Physo129347;Parent=Physo129347;rank=2 scaffold_7 . exon 626028 627167 . + . ID=Physo129347.2;Parent=Physo129347;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_7 ensembl protein_coding_gene 621043 623795 . + . ID=Physo155728;biotype=protein_coding;external_name=C_scaffold_7000057;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 621043 623795 . + . ID=Physo155728;Parent=Physo155728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 621043 621181 . + 0 ID=Physo155728;Parent=Physo155728;rank=1 scaffold_7 . exon 621043 621181 . + . ID=Physo155728.1;Parent=Physo155728;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 621250 621999 . + 0 ID=Physo155728;Parent=Physo155728;rank=2 scaffold_7 . exon 621250 621999 . + . ID=Physo155728.2;Parent=Physo155728;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 622089 622167 . + 0 ID=Physo155728;Parent=Physo155728;rank=3 scaffold_7 . exon 622089 622167 . + . ID=Physo155728.3;Parent=Physo155728;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_7 . CDS 622247 622457 . + 0 ID=Physo155728;Parent=Physo155728;rank=4 scaffold_7 . exon 622247 622457 . + . ID=Physo155728.4;Parent=Physo155728;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 622535 622590 . + 0 ID=Physo155728;Parent=Physo155728;rank=5 scaffold_7 . exon 622535 622590 . + . ID=Physo155728.5;Parent=Physo155728;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_7 . CDS 622666 622748 . + 0 ID=Physo155728;Parent=Physo155728;rank=6 scaffold_7 . exon 622666 622748 . + . ID=Physo155728.6;Parent=Physo155728;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_7 . CDS 622827 622897 . + 0 ID=Physo155728;Parent=Physo155728;rank=7 scaffold_7 . exon 622827 622897 . + . ID=Physo155728.7;Parent=Physo155728;constitutive=1;ensembl_phase=1;rank=7 scaffold_7 . CDS 622963 623069 . + 0 ID=Physo155728;Parent=Physo155728;rank=8 scaffold_7 . exon 622963 623069 . + . ID=Physo155728.8;Parent=Physo155728;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_7 . CDS 623159 623372 . + 0 ID=Physo155728;Parent=Physo155728;rank=9 scaffold_7 . exon 623159 623372 . + . ID=Physo155728.9;Parent=Physo155728;constitutive=1;ensembl_phase=2;rank=9 scaffold_7 . CDS 623410 623563 . + 0 ID=Physo155728;Parent=Physo155728;rank=10 scaffold_7 . exon 623410 623563 . + . ID=Physo155728.10;Parent=Physo155728;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_7 . CDS 623782 623795 . + 0 ID=Physo155728;Parent=Physo155728;rank=11 scaffold_7 . exon 623782 623795 . + . ID=Physo155728.11;Parent=Physo155728;constitutive=1;ensembl_phase=1;rank=11 scaffold_7 . biological_region 629843 629848 0.999 + . logic_name=eponine scaffold_7 . biological_region 633481 633482 0.999 + . logic_name=eponine scaffold_7 . biological_region 634011 634014 0.999 - . logic_name=eponine scaffold_7 . biological_region 634207 634208 0.999 + . logic_name=eponine scaffold_7 . biological_region 634234 634238 0.999 - . logic_name=eponine scaffold_7 . biological_region 637640 637642 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 634535 635040 . + . ID=Physo108373;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70018;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 634535 635040 . + . ID=Physo108373;Parent=Physo108373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 634535 634655 . + 0 ID=Physo108373;Parent=Physo108373;rank=1 scaffold_7 . exon 634535 634655 . + . ID=Physo108373.1;Parent=Physo108373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 634741 634823 . + 0 ID=Physo108373;Parent=Physo108373;rank=2 scaffold_7 . exon 634741 634823 . + . ID=Physo108373.2;Parent=Physo108373;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 634897 635040 . + 0 ID=Physo108373;Parent=Physo108373;rank=3 scaffold_7 . exon 634897 635040 . + . ID=Physo108373.3;Parent=Physo108373;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 637411 638457 . - . ID=Physo108374;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70019;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 637411 638457 . - . ID=Physo108374;Parent=Physo108374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 637411 638010 . - . ID=Physo108374.2;Parent=Physo108374;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_7 . CDS 637613 638010 . - 0 ID=Physo108374;Parent=Physo108374;rank=2 scaffold_7 . CDS 638223 638370 . - 0 ID=Physo108374;Parent=Physo108374;rank=1 scaffold_7 ensembl protein_coding_gene 635225 636227 . - . ID=Physo111835;biotype=protein_coding;external_name=estExt_Genewise1.C_70077;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 635225 636227 . - . ID=Physo111835;Parent=Physo111835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 635225 635788 . - . ID=Physo111835.2;Parent=Physo111835;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_7 . CDS 635391 635788 . - 0 ID=Physo111835;Parent=Physo111835;rank=2 scaffold_7 . CDS 636001 636148 . - 0 ID=Physo111835;Parent=Physo111835;rank=1 scaffold_7 . exon 636001 636227 . - . ID=Physo111835.1;Parent=Physo111835;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 628393 629092 . - . ID=Physo129349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70174;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 628393 629092 . - . ID=Physo129349;Parent=Physo129349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 628393 628620 . - 0 ID=Physo129349;Parent=Physo129349;rank=2 scaffold_7 . exon 628393 628620 . - . ID=Physo129349.2;Parent=Physo129349;constitutive=1;rank=2 scaffold_7 . CDS 628671 629087 . - 0 ID=Physo129349;Parent=Physo129349;rank=1 scaffold_7 . exon 628671 629092 . - . ID=Physo129349.1;Parent=Physo129349;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 633076 634351 . - . ID=Physo129351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70176;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 633076 634351 . - . ID=Physo129351;Parent=Physo129351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 633076 633582 . - 0 ID=Physo129351;Parent=Physo129351;rank=3 scaffold_7 . exon 633076 633582 . - . ID=Physo129351.3;Parent=Physo129351;constitutive=1;rank=3 scaffold_7 . CDS 633655 634105 . - 0 ID=Physo129351;Parent=Physo129351;rank=2 scaffold_7 . exon 633655 634105 . - . ID=Physo129351.2;Parent=Physo129351;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 634194 634351 . - 0 ID=Physo129351;Parent=Physo129351;rank=1 scaffold_7 . exon 634194 634351 . - . ID=Physo129351.1;Parent=Physo129351;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 629572 632914 . + . ID=Physo155731;biotype=protein_coding;external_name=C_scaffold_7000060;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 629572 632914 . + . ID=Physo155731;Parent=Physo155731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 629572 629937 . + 0 ID=Physo155731;Parent=Physo155731;rank=1 scaffold_7 . exon 629572 629937 . + . ID=Physo155731.1;Parent=Physo155731;constitutive=1;rank=1 scaffold_7 . CDS 630254 630442 . + 0 ID=Physo155731;Parent=Physo155731;rank=2 scaffold_7 . exon 630254 630442 . + . ID=Physo155731.2;Parent=Physo155731;constitutive=1;rank=2 scaffold_7 . CDS 630533 630616 . + 0 ID=Physo155731;Parent=Physo155731;rank=3 scaffold_7 . exon 630533 630616 . + . ID=Physo155731.3;Parent=Physo155731;constitutive=1;rank=3 scaffold_7 . CDS 630700 630902 . + 0 ID=Physo155731;Parent=Physo155731;rank=4 scaffold_7 . exon 630700 630902 . + . ID=Physo155731.4;Parent=Physo155731;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . CDS 631000 631087 . + 0 ID=Physo155731;Parent=Physo155731;rank=5 scaffold_7 . exon 631000 631087 . + . ID=Physo155731.5;Parent=Physo155731;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 631169 632470 . + 0 ID=Physo155731;Parent=Physo155731;rank=6 scaffold_7 . exon 631169 632470 . + . ID=Physo155731.6;Parent=Physo155731;constitutive=1;rank=6 scaffold_7 . CDS 632810 632914 . + 0 ID=Physo155731;Parent=Physo155731;rank=7 scaffold_7 . exon 632810 632914 . + . ID=Physo155731.7;Parent=Physo155731;constitutive=1;rank=7 scaffold_7 . repeat_region 639220 639262 . ? . description=trf scaffold_7 . repeat_region 643396 643445 . ? . description=dust scaffold_7 . repeat_region 643477 643498 . ? . description=dust scaffold_7 . exon 638223 638457 . - . ID=Physo108374.1;Parent=Physo108374;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 646839 648736 . + . ID=Physo108375;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70020;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 646839 648736 . + . ID=Physo108375;Parent=Physo108375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 646839 647083 . + 0 ID=Physo108375;Parent=Physo108375;rank=1 scaffold_7 . exon 646839 647083 . + . ID=Physo108375.1;Parent=Physo108375;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 647153 647236 . + 0 ID=Physo108375;Parent=Physo108375;rank=2 scaffold_7 . exon 647153 647236 . + . ID=Physo108375.2;Parent=Physo108375;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 647309 647396 . + 0 ID=Physo108375;Parent=Physo108375;rank=3 scaffold_7 . exon 647309 647396 . + . ID=Physo108375.3;Parent=Physo108375;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 647470 647747 . + 0 ID=Physo108375;Parent=Physo108375;rank=4 scaffold_7 . exon 647470 647747 . + . ID=Physo108375.4;Parent=Physo108375;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . CDS 647818 648160 . + 0 ID=Physo108375;Parent=Physo108375;rank=5 scaffold_7 . exon 647818 648160 . + . ID=Physo108375.5;Parent=Physo108375;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 648223 648440 . + 0 ID=Physo108375;Parent=Physo108375;rank=6 scaffold_7 . CDS 648499 648736 . + 0 ID=Physo108375;Parent=Physo108375;rank=7 scaffold_7 ensembl protein_coding_gene 641802 642985 . - . ID=Physo129355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70180;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 641802 642985 . - . ID=Physo129355;Parent=Physo129355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 641802 642694 . - 0 ID=Physo129355;Parent=Physo129355;rank=3 scaffold_7 . exon 641802 642694 . - . ID=Physo129355.3;Parent=Physo129355;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 642776 642842 . - 0 ID=Physo129355;Parent=Physo129355;rank=2 scaffold_7 . exon 642776 642842 . - . ID=Physo129355.2;Parent=Physo129355;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 642911 642985 . - 0 ID=Physo129355;Parent=Physo129355;rank=1 scaffold_7 . exon 642911 642985 . - . ID=Physo129355.1;Parent=Physo129355;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 644828 646729 . + . ID=Physo129356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70181;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 644828 646729 . + . ID=Physo129356;Parent=Physo129356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 644828 646729 . + 0 ID=Physo129356;Parent=Physo129356;rank=1 scaffold_7 . exon 644828 646729 . + . ID=Physo129356.1;Parent=Physo129356;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 639047 641507 . + . ID=Physo155734;biotype=protein_coding;external_name=C_scaffold_7000063;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 639047 641507 . + . ID=Physo155734;Parent=Physo155734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 639047 639139 . + 0 ID=Physo155734;Parent=Physo155734;rank=1 scaffold_7 . exon 639047 639139 . + . ID=Physo155734.1;Parent=Physo155734;constitutive=1;rank=1 scaffold_7 . CDS 639283 639516 . + 0 ID=Physo155734;Parent=Physo155734;rank=2 scaffold_7 . exon 639283 639516 . + . ID=Physo155734.2;Parent=Physo155734;constitutive=1;rank=2 scaffold_7 . CDS 639589 639649 . + 0 ID=Physo155734;Parent=Physo155734;rank=3 scaffold_7 . exon 639589 639649 . + . ID=Physo155734.3;Parent=Physo155734;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 639723 639841 . + 0 ID=Physo155734;Parent=Physo155734;rank=4 scaffold_7 . exon 639723 639841 . + . ID=Physo155734.4;Parent=Physo155734;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 639931 640294 . + 0 ID=Physo155734;Parent=Physo155734;rank=5 scaffold_7 . exon 639931 640294 . + . ID=Physo155734.5;Parent=Physo155734;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_7 . CDS 640407 640477 . + 0 ID=Physo155734;Parent=Physo155734;rank=6 scaffold_7 . exon 640407 640477 . + . ID=Physo155734.6;Parent=Physo155734;constitutive=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 640608 640718 . + 0 ID=Physo155734;Parent=Physo155734;rank=7 scaffold_7 . exon 640608 640718 . + . ID=Physo155734.7;Parent=Physo155734;constitutive=1;rank=7 scaffold_7 . CDS 640824 641248 . + 0 ID=Physo155734;Parent=Physo155734;rank=8 scaffold_7 . exon 640824 641248 . + . ID=Physo155734.8;Parent=Physo155734;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_7 . CDS 641354 641507 . + 0 ID=Physo155734;Parent=Physo155734;rank=9 scaffold_7 . exon 641354 641507 . + . ID=Physo155734.9;Parent=Physo155734;constitutive=1;ensembl_phase=2;rank=9 scaffold_7 . biological_region 648589 648590 0.999 + . logic_name=eponine scaffold_7 . biological_region 654189 654190 0.999 - . logic_name=eponine scaffold_7 . biological_region 657986 657988 0.999 - . logic_name=eponine scaffold_7 . exon 648223 648440 . + . ID=Physo108375.6;Parent=Physo108375;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_7 . exon 648499 648736 . + . ID=Physo108375.7;Parent=Physo108375;constitutive=1;ensembl_phase=2;rank=7 scaffold_7 ensembl protein_coding_gene 651848 652830 . + . ID=Physo129358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70183;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 651848 652830 . + . ID=Physo129358;Parent=Physo129358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 651848 652013 . + . ID=Physo129358.1;Parent=Physo129358;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 651855 652013 . + 0 ID=Physo129358;Parent=Physo129358;rank=1 scaffold_7 . CDS 652086 652142 . + 0 ID=Physo129358;Parent=Physo129358;rank=2 scaffold_7 . exon 652086 652142 . + . ID=Physo129358.2;Parent=Physo129358;constitutive=1;rank=2 scaffold_7 . CDS 652208 652283 . + 0 ID=Physo129358;Parent=Physo129358;rank=3 scaffold_7 . exon 652208 652283 . + . ID=Physo129358.3;Parent=Physo129358;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 652364 652779 . + 0 ID=Physo129358;Parent=Physo129358;rank=4 scaffold_7 . exon 652364 652830 . + . ID=Physo129358.4;Parent=Physo129358;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_7 ensembl protein_coding_gene 652805 654282 . - . ID=Physo129359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70184;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 652805 654282 . - . ID=Physo129359;Parent=Physo129359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 652805 654282 . - . ID=Physo129359.1;Parent=Physo129359;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 . CDS 652936 654282 . - 0 ID=Physo129359;Parent=Physo129359;rank=1 scaffold_7 ensembl protein_coding_gene 655820 658878 . + . ID=Physo129361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70186;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 655820 658878 . + . ID=Physo129361;Parent=Physo129361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 655820 655832 . + 0 ID=Physo129361;Parent=Physo129361;rank=1 scaffold_7 . exon 655820 655832 . + . ID=Physo129361.1;Parent=Physo129361;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 655917 656105 . + 0 ID=Physo129361;Parent=Physo129361;rank=2 scaffold_7 . exon 655917 656105 . + . ID=Physo129361.2;Parent=Physo129361;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 656168 656399 . + 0 ID=Physo129361;Parent=Physo129361;rank=3 scaffold_7 . exon 656168 656399 . + . ID=Physo129361.3;Parent=Physo129361;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_7 . CDS 656440 656783 . + 0 ID=Physo129361;Parent=Physo129361;rank=4 scaffold_7 . exon 656440 656783 . + . ID=Physo129361.4;Parent=Physo129361;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 657372 657672 . + 0 ID=Physo129361;Parent=Physo129361;rank=5 scaffold_7 . exon 657372 657672 . + . ID=Physo129361.5;Parent=Physo129361;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_7 . CDS 657748 658403 . + 0 ID=Physo129361;Parent=Physo129361;rank=6 scaffold_7 . exon 657748 658403 . + . ID=Physo129361.6;Parent=Physo129361;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_7 . CDS 658475 658878 . + 0 ID=Physo129361;Parent=Physo129361;rank=7 scaffold_7 ensembl protein_coding_gene 654568 655426 . + . ID=Physo155737;biotype=protein_coding;external_name=C_scaffold_7000066;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 654568 655426 . + . ID=Physo155737;Parent=Physo155737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 654568 654772 . + 0 ID=Physo155737;Parent=Physo155737;rank=1 scaffold_7 . exon 654568 654772 . + . ID=Physo155737.1;Parent=Physo155737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 654840 655426 . + 0 ID=Physo155737;Parent=Physo155737;rank=2 scaffold_7 . exon 654840 655426 . + . ID=Physo155737.2;Parent=Physo155737;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . repeat_region 660495 660518 . ? . description=trf scaffold_7 . repeat_region 663103 663184 . ? . description=dust scaffold_7 . repeat_region 665227 665258 . ? . description=dust scaffold_7 ensembl protein_coding_gene 663335 664903 . + . ID=Physo111850;biotype=protein_coding;external_name=estExt_Genewise1.C_70092;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 663335 664903 . + . ID=Physo111850;Parent=Physo111850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 663335 663475 . + . ID=Physo111850.1;Parent=Physo111850;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 663449 663475 . + 0 ID=Physo111850;Parent=Physo111850;rank=1 scaffold_7 . CDS 663579 664838 . + 0 ID=Physo111850;Parent=Physo111850;rank=2 scaffold_7 . exon 663579 664903 . + . ID=Physo111850.2;Parent=Physo111850;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_7 . exon 658475 658878 . + . ID=Physo129361.7;Parent=Physo129361;constitutive=1;ensembl_phase=1;rank=7 scaffold_7 ensembl protein_coding_gene 664948 670820 . - . ID=Physo155739;biotype=protein_coding;external_name=C_scaffold_7000068;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 664948 670820 . - . ID=Physo155739;Parent=Physo155739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 664948 665249 . - 0 ID=Physo155739;Parent=Physo155739;rank=11 scaffold_7 . exon 664948 665249 . - . ID=Physo155739.11;Parent=Physo155739;constitutive=1;ensembl_phase=1;rank=11 scaffold_7 . CDS 665406 666041 . - 0 ID=Physo155739;Parent=Physo155739;rank=10 scaffold_7 . exon 665406 666041 . - . ID=Physo155739.10;Parent=Physo155739;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=10 scaffold_7 . CDS 666342 666743 . - 0 ID=Physo155739;Parent=Physo155739;rank=9 scaffold_7 . exon 666342 666743 . - . ID=Physo155739.9;Parent=Physo155739;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_7 . CDS 666852 667106 . - 0 ID=Physo155739;Parent=Physo155739;rank=8 scaffold_7 . exon 666852 667106 . - . ID=Physo155739.8;Parent=Physo155739;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_7 . CDS 667134 667355 . - 0 ID=Physo155739;Parent=Physo155739;rank=7 scaffold_7 . exon 667134 667355 . - . ID=Physo155739.7;Parent=Physo155739;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_7 . CDS 667422 667833 . - 0 ID=Physo155739;Parent=Physo155739;rank=6 scaffold_7 . exon 667422 667833 . - . ID=Physo155739.6;Parent=Physo155739;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_7 . CDS 667879 668412 . - 0 ID=Physo155739;Parent=Physo155739;rank=5 scaffold_7 . exon 667879 668412 . - . ID=Physo155739.5;Parent=Physo155739;constitutive=1;rank=5 scaffold_7 . CDS 668440 669036 . - 0 ID=Physo155739;Parent=Physo155739;rank=4 scaffold_7 . CDS 669281 669319 . - 0 ID=Physo155739;Parent=Physo155739;rank=3 scaffold_7 . CDS 669396 669766 . - 0 ID=Physo155739;Parent=Physo155739;rank=2 scaffold_7 . CDS 670400 670820 . - 0 ID=Physo155739;Parent=Physo155739;rank=1 scaffold_7 . biological_region 668674 668677 0.999 + . logic_name=eponine scaffold_7 . biological_region 668778 668781 0.999 + . logic_name=eponine scaffold_7 . biological_region 668786 668790 0.999 - . logic_name=eponine scaffold_7 . biological_region 668795 668800 0.999 + . logic_name=eponine scaffold_7 . biological_region 668806 668809 0.999 - . logic_name=eponine scaffold_7 . biological_region 668819 668821 0.999 - . logic_name=eponine scaffold_7 . biological_region 668841 668844 0.999 + . logic_name=eponine scaffold_7 . biological_region 668884 668889 0.999 - . logic_name=eponine scaffold_7 . biological_region 672176 672177 0.999 + . logic_name=eponine scaffold_7 . biological_region 672227 672229 0.999 - . logic_name=eponine scaffold_7 . biological_region 672705 672707 0.999 + . logic_name=eponine scaffold_7 . biological_region 672990 672992 0.999 + . logic_name=eponine scaffold_7 . biological_region 673008 673011 0.999 + . logic_name=eponine scaffold_7 . biological_region 673043 673047 0.999 + . logic_name=eponine scaffold_7 . biological_region 673148 673151 0.999 - . logic_name=eponine scaffold_7 . biological_region 676397 676400 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 671076 672793 . - . ID=Physo129364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70189;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 671076 672793 . - . ID=Physo129364;Parent=Physo129364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 671076 672350 . - 0 ID=Physo129364;Parent=Physo129364;rank=2 scaffold_7 . exon 671076 672350 . - . ID=Physo129364.2;Parent=Physo129364;constitutive=1;rank=2 scaffold_7 . CDS 672440 672793 . - 0 ID=Physo129364;Parent=Physo129364;rank=1 scaffold_7 . exon 672440 672793 . - . ID=Physo129364.1;Parent=Physo129364;constitutive=1;rank=1 scaffold_7 . exon 668440 669036 . - . ID=Physo155739.4;Parent=Physo155739;constitutive=1;rank=4 scaffold_7 . exon 669281 669319 . - . ID=Physo155739.3;Parent=Physo155739;constitutive=1;rank=3 scaffold_7 . exon 669396 669766 . - . ID=Physo155739.2;Parent=Physo155739;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . exon 670400 670820 . - . ID=Physo155739.1;Parent=Physo155739;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 676038 677780 . + . ID=Physo155740;biotype=protein_coding;external_name=C_scaffold_7000069;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 676038 677780 . + . ID=Physo155740;Parent=Physo155740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 676038 676908 . + 0 ID=Physo155740;Parent=Physo155740;rank=1 scaffold_7 . exon 676038 676908 . + . ID=Physo155740.1;Parent=Physo155740;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 676936 677130 . + 0 ID=Physo155740;Parent=Physo155740;rank=2 scaffold_7 . exon 676936 677130 . + . ID=Physo155740.2;Parent=Physo155740;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 677311 677486 . + 0 ID=Physo155740;Parent=Physo155740;rank=3 scaffold_7 . exon 677311 677486 . + . ID=Physo155740.3;Parent=Physo155740;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 677549 677666 . + 0 ID=Physo155740;Parent=Physo155740;rank=4 scaffold_7 . exon 677549 677666 . + . ID=Physo155740.4;Parent=Physo155740;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_7 . CDS 677770 677780 . + 0 ID=Physo155740;Parent=Physo155740;rank=5 scaffold_7 . exon 677770 677780 . + . ID=Physo155740.5;Parent=Physo155740;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 ensembl protein_coding_gene 677933 682630 . - . ID=Physo155741;biotype=protein_coding;external_name=C_scaffold_7000070;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 677933 682630 . - . ID=Physo155741;Parent=Physo155741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 677933 681872 . - 0 ID=Physo155741;Parent=Physo155741;rank=3 scaffold_7 . exon 677933 681872 . - . ID=Physo155741.3;Parent=Physo155741;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 681933 682367 . - 0 ID=Physo155741;Parent=Physo155741;rank=2 scaffold_7 . CDS 682479 682630 . - 0 ID=Physo155741;Parent=Physo155741;rank=1 scaffold_7 . repeat_region 682429 682455 . ? . description=trf scaffold_7 . repeat_region 682541 682600 . ? . description=dust scaffold_7 ensembl protein_coding_gene 685505 687144 . + . ID=Physo129368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70193;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 685505 687144 . + . ID=Physo129368;Parent=Physo129368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 685505 685507 . + 0 ID=Physo129368;Parent=Physo129368;rank=1 scaffold_7 . exon 685505 685507 . + . ID=Physo129368.1;Parent=Physo129368;constitutive=1;rank=1 scaffold_7 . CDS 685582 687144 . + 0 ID=Physo129368;Parent=Physo129368;rank=2 scaffold_7 . exon 685582 687144 . + . ID=Physo129368.2;Parent=Physo129368;constitutive=1;rank=2 scaffold_7 ensembl protein_coding_gene 687178 688715 . - . ID=Physo129369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70194;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 687178 688715 . - . ID=Physo129369;Parent=Physo129369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 687178 688715 . - . ID=Physo129369.1;Parent=Physo129369;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 . CDS 687321 688715 . - 0 ID=Physo129369;Parent=Physo129369;rank=1 scaffold_7 . exon 681933 682367 . - . ID=Physo155741.2;Parent=Physo155741;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . exon 682479 682630 . - . ID=Physo155741.1;Parent=Physo155741;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . biological_region 688405 688406 0.999 - . logic_name=eponine scaffold_7 . biological_region 688498 688505 0.999 + . logic_name=eponine scaffold_7 . biological_region 688519 688520 0.999 - . logic_name=eponine scaffold_7 . biological_region 688572 688578 0.999 + . logic_name=eponine scaffold_7 . biological_region 688596 688600 0.999 - . logic_name=eponine scaffold_7 . biological_region 688617 688619 0.999 + . logic_name=eponine scaffold_7 . biological_region 688635 688640 0.999 + . logic_name=eponine scaffold_7 . biological_region 688644 688649 0.999 - . logic_name=eponine scaffold_7 . biological_region 688743 688752 0.999 - . logic_name=eponine scaffold_7 . biological_region 694892 694899 0.999 - . logic_name=eponine scaffold_7 . biological_region 697513 697514 0.999 - . logic_name=eponine scaffold_7 . biological_region 697570 697572 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 689347 691594 . + . ID=Physo108377;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70022;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 689347 691594 . + . ID=Physo108377;Parent=Physo108377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 689347 689428 . + 0 ID=Physo108377;Parent=Physo108377;rank=1 scaffold_7 . exon 689347 689428 . + . ID=Physo108377.1;Parent=Physo108377;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 689491 689569 . + 0 ID=Physo108377;Parent=Physo108377;rank=2 scaffold_7 . exon 689491 689569 . + . ID=Physo108377.2;Parent=Physo108377;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 689638 689689 . + 0 ID=Physo108377;Parent=Physo108377;rank=3 scaffold_7 . exon 689638 689689 . + . ID=Physo108377.3;Parent=Physo108377;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 689781 689838 . + 0 ID=Physo108377;Parent=Physo108377;rank=4 scaffold_7 . exon 689781 689838 . + . ID=Physo108377.4;Parent=Physo108377;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_7 . CDS 689909 690067 . + 0 ID=Physo108377;Parent=Physo108377;rank=5 scaffold_7 . exon 689909 690067 . + . ID=Physo108377.5;Parent=Physo108377;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_7 . CDS 690123 690235 . + 0 ID=Physo108377;Parent=Physo108377;rank=6 scaffold_7 . exon 690123 690235 . + . ID=Physo108377.6;Parent=Physo108377;constitutive=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 690303 690539 . + 0 ID=Physo108377;Parent=Physo108377;rank=7 scaffold_7 . exon 690303 690539 . + . ID=Physo108377.7;Parent=Physo108377;constitutive=1;rank=7 scaffold_7 . CDS 690609 690698 . + 0 ID=Physo108377;Parent=Physo108377;rank=8 scaffold_7 . exon 690609 690698 . + . ID=Physo108377.8;Parent=Physo108377;constitutive=1;rank=8 scaffold_7 . CDS 690786 690854 . + 0 ID=Physo108377;Parent=Physo108377;rank=9 scaffold_7 . exon 690786 690854 . + . ID=Physo108377.9;Parent=Physo108377;constitutive=1;rank=9 scaffold_7 . CDS 690913 691097 . + 0 ID=Physo108377;Parent=Physo108377;rank=10 scaffold_7 . exon 690913 691097 . + . ID=Physo108377.10;Parent=Physo108377;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_7 . CDS 691564 691594 . + 0 ID=Physo108377;Parent=Physo108377;rank=11 scaffold_7 . exon 691564 691594 . + . ID=Physo108377.11;Parent=Physo108377;constitutive=1;ensembl_phase=2;rank=11 scaffold_7 ensembl protein_coding_gene 691930 692923 . + . ID=Physo129371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70196;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 691930 692923 . + . ID=Physo129371;Parent=Physo129371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 691930 692788 . + 0 ID=Physo129371;Parent=Physo129371;rank=1 scaffold_7 . exon 691930 692788 . + . ID=Physo129371.1;Parent=Physo129371;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 692898 692923 . + 0 ID=Physo129371;Parent=Physo129371;rank=2 scaffold_7 . exon 692898 692923 . + . ID=Physo129371.2;Parent=Physo129371;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 ensembl protein_coding_gene 694221 695057 . - . ID=Physo129372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70197;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 694221 695057 . - . ID=Physo129372;Parent=Physo129372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 694221 695057 . - 0 ID=Physo129372;Parent=Physo129372;rank=1 scaffold_7 . exon 694221 695057 . - . ID=Physo129372.1;Parent=Physo129372;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 696304 700204 . - . ID=Physo129373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70198;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 696304 700204 . - . ID=Physo129373;Parent=Physo129373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 696304 696549 . - 0 ID=Physo129373;Parent=Physo129373;rank=10 scaffold_7 . exon 696304 696549 . - . ID=Physo129373.10;Parent=Physo129373;constitutive=1;rank=10 scaffold_7 . CDS 696643 696948 . - 0 ID=Physo129373;Parent=Physo129373;rank=9 scaffold_7 . exon 696643 696948 . - . ID=Physo129373.9;Parent=Physo129373;constitutive=1;rank=9 scaffold_7 . CDS 697030 697107 . - 0 ID=Physo129373;Parent=Physo129373;rank=8 scaffold_7 . exon 697030 697107 . - . ID=Physo129373.8;Parent=Physo129373;constitutive=1;rank=8 scaffold_7 . CDS 697183 697415 . - 0 ID=Physo129373;Parent=Physo129373;rank=7 scaffold_7 . exon 697183 697415 . - . ID=Physo129373.7;Parent=Physo129373;constitutive=1;ensembl_phase=1;rank=7 scaffold_7 . CDS 697480 697827 . - 0 ID=Physo129373;Parent=Physo129373;rank=6 scaffold_7 . exon 697480 697827 . - . ID=Physo129373.6;Parent=Physo129373;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 697930 698024 . - 0 ID=Physo129373;Parent=Physo129373;rank=5 scaffold_7 . exon 697930 698024 . - . ID=Physo129373.5;Parent=Physo129373;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 698121 698254 . - 0 ID=Physo129373;Parent=Physo129373;rank=4 scaffold_7 . CDS 698326 698529 . - 0 ID=Physo129373;Parent=Physo129373;rank=3 scaffold_7 . CDS 698613 699241 . - 0 ID=Physo129373;Parent=Physo129373;rank=2 scaffold_7 . CDS 699331 700204 . - 0 ID=Physo129373;Parent=Physo129373;rank=1 scaffold_7 . repeat_region 700013 700065 . ? . description=dust scaffold_7 ensembl protein_coding_gene 700659 701951 . + . ID=Physo108378;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70023;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 700659 701951 . + . ID=Physo108378;Parent=Physo108378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 700659 701951 . + 0 ID=Physo108378;Parent=Physo108378;rank=1 scaffold_7 . exon 700659 701951 . + . ID=Physo108378.1;Parent=Physo108378;constitutive=1;rank=1 scaffold_7 . exon 698121 698254 . - . ID=Physo129373.4;Parent=Physo129373;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . exon 698326 698529 . - . ID=Physo129373.3;Parent=Physo129373;constitutive=1;rank=3 scaffold_7 . exon 698613 699241 . - . ID=Physo129373.2;Parent=Physo129373;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . exon 699331 700204 . - . ID=Physo129373.1;Parent=Physo129373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 702527 703279 . - . ID=Physo129375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70200;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 702527 703279 . - . ID=Physo129375;Parent=Physo129375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 702527 703279 . - 0 ID=Physo129375;Parent=Physo129375;rank=1 scaffold_7 . exon 702527 703279 . - . ID=Physo129375.1;Parent=Physo129375;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 703952 704654 . - . ID=Physo129376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70201;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 703952 704654 . - . ID=Physo129376;Parent=Physo129376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 703952 704554 . - 0 ID=Physo129376;Parent=Physo129376;rank=1 scaffold_7 . exon 703952 704654 . - . ID=Physo129376.1;Parent=Physo129376;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 705854 709069 . + . ID=Physo129377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70202;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 705854 709069 . + . ID=Physo129377;Parent=Physo129377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 705854 707970 . + 0 ID=Physo129377;Parent=Physo129377;rank=1 scaffold_7 . exon 705854 707970 . + . ID=Physo129377.1;Parent=Physo129377;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 708252 708759 . + 0 ID=Physo129377;Parent=Physo129377;rank=2 scaffold_7 . CDS 709010 709069 . + 0 ID=Physo129377;Parent=Physo129377;rank=3 scaffold_7 . biological_region 713686 713687 0.999 + . logic_name=eponine scaffold_7 . biological_region 713802 713803 0.999 - . logic_name=eponine scaffold_7 . exon 708252 708759 . + . ID=Physo129377.2;Parent=Physo129377;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . exon 709010 709069 . + . ID=Physo129377.3;Parent=Physo129377;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 713602 714368 . + . ID=Physo129378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70203;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 713602 714368 . + . ID=Physo129378;Parent=Physo129378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 713602 714033 . + 0 ID=Physo129378;Parent=Physo129378;rank=1 scaffold_7 . exon 713602 714033 . + . ID=Physo129378.1;Parent=Physo129378;constitutive=1;rank=1 scaffold_7 . CDS 714138 714368 . + 0 ID=Physo129378;Parent=Physo129378;rank=2 scaffold_7 . exon 714138 714368 . + . ID=Physo129378.2;Parent=Physo129378;constitutive=1;rank=2 scaffold_7 . repeat_region 720163 720183 . ? . description=trf scaffold_7 . repeat_region 723300 723307 . ? . description=dust scaffold_7 . repeat_region 726905 726935 . ? . description=dust scaffold_7 . repeat_region 726908 726934 . ? . description=trf scaffold_7 ensembl protein_coding_gene 719974 721487 . - . ID=Physo129379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70204;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 719974 721487 . - . ID=Physo129379;Parent=Physo129379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 719974 720629 . - . ID=Physo129379.4;Parent=Physo129379;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_7 . CDS 720109 720629 . - 0 ID=Physo129379;Parent=Physo129379;rank=4 scaffold_7 . CDS 720700 721256 . - 0 ID=Physo129379;Parent=Physo129379;rank=3 scaffold_7 . exon 720700 721256 . - . ID=Physo129379.3;Parent=Physo129379;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 721352 721387 . - 0 ID=Physo129379;Parent=Physo129379;rank=2 scaffold_7 . exon 721352 721387 . - . ID=Physo129379.2;Parent=Physo129379;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 721465 721487 . - 0 ID=Physo129379;Parent=Physo129379;rank=1 scaffold_7 . exon 721465 721487 . - . ID=Physo129379.1;Parent=Physo129379;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 727463 733098 . + . ID=Physo129382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70207;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 727463 733098 . + . ID=Physo129382;Parent=Physo129382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 727463 727833 . + . ID=Physo129382.1;Parent=Physo129382;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 727656 727833 . + 0 ID=Physo129382;Parent=Physo129382;rank=1 scaffold_7 . CDS 727932 728377 . + 0 ID=Physo129382;Parent=Physo129382;rank=2 scaffold_7 . exon 727932 728377 . + . ID=Physo129382.2;Parent=Physo129382;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 728468 728755 . + 0 ID=Physo129382;Parent=Physo129382;rank=3 scaffold_7 . CDS 728825 728868 . + 0 ID=Physo129382;Parent=Physo129382;rank=4 scaffold_7 . CDS 729092 729773 . + 0 ID=Physo129382;Parent=Physo129382;rank=5 scaffold_7 . CDS 729888 730026 . + 0 ID=Physo129382;Parent=Physo129382;rank=6 scaffold_7 . CDS 730055 730138 . + 0 ID=Physo129382;Parent=Physo129382;rank=7 scaffold_7 . CDS 730183 733097 . + 0 ID=Physo129382;Parent=Physo129382;rank=8 scaffold_7 ensembl protein_coding_gene 721877 726072 . + . ID=Physo155743;biotype=protein_coding;external_name=C_scaffold_7000072;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 721877 726072 . + . ID=Physo155743;Parent=Physo155743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 721877 721947 . + 0 ID=Physo155743;Parent=Physo155743;rank=1 scaffold_7 . exon 721877 721947 . + . ID=Physo155743.1;Parent=Physo155743;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 721993 722279 . + 0 ID=Physo155743;Parent=Physo155743;rank=2 scaffold_7 . exon 721993 722279 . + . ID=Physo155743.2;Parent=Physo155743;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 722363 722715 . + 0 ID=Physo155743;Parent=Physo155743;rank=3 scaffold_7 . exon 722363 722715 . + . ID=Physo155743.3;Parent=Physo155743;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 722782 723069 . + 0 ID=Physo155743;Parent=Physo155743;rank=4 scaffold_7 . exon 722782 723069 . + . ID=Physo155743.4;Parent=Physo155743;constitutive=1;rank=4 scaffold_7 . CDS 723944 724265 . + 0 ID=Physo155743;Parent=Physo155743;rank=5 scaffold_7 . exon 723944 724265 . + . ID=Physo155743.5;Parent=Physo155743;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_7 . CDS 724336 724688 . + 0 ID=Physo155743;Parent=Physo155743;rank=6 scaffold_7 . exon 724336 724688 . + . ID=Physo155743.6;Parent=Physo155743;constitutive=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 724758 725045 . + 0 ID=Physo155743;Parent=Physo155743;rank=7 scaffold_7 . exon 724758 725045 . + . ID=Physo155743.7;Parent=Physo155743;constitutive=1;rank=7 scaffold_7 . CDS 725288 725291 . + 0 ID=Physo155743;Parent=Physo155743;rank=8 scaffold_7 . exon 725288 725291 . + . ID=Physo155743.8;Parent=Physo155743;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_7 . CDS 725380 725542 . + 0 ID=Physo155743;Parent=Physo155743;rank=9 scaffold_7 . exon 725380 725542 . + . ID=Physo155743.9;Parent=Physo155743;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_7 . CDS 725630 725661 . + 0 ID=Physo155743;Parent=Physo155743;rank=10 scaffold_7 . exon 725630 725661 . + . ID=Physo155743.10;Parent=Physo155743;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_7 . CDS 725744 725836 . + 0 ID=Physo155743;Parent=Physo155743;rank=11 scaffold_7 . exon 725744 725836 . + . ID=Physo155743.11;Parent=Physo155743;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=11 scaffold_7 . CDS 725897 726072 . + 0 ID=Physo155743;Parent=Physo155743;rank=12 scaffold_7 . exon 725897 726072 . + . ID=Physo155743.12;Parent=Physo155743;constitutive=1;ensembl_phase=1;rank=12 scaffold_7 . biological_region 730310 730312 0.999 - . logic_name=eponine scaffold_7 . biological_region 730329 730331 0.999 - . logic_name=eponine scaffold_7 . biological_region 730383 730388 0.999 - . logic_name=eponine scaffold_7 . biological_region 730555 730557 0.999 - . logic_name=eponine scaffold_7 . biological_region 735862 735863 0.999 - . logic_name=eponine scaffold_7 . biological_region 736365 736366 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 733235 734125 . - . ID=Physo108379;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70024;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 733235 734125 . - . ID=Physo108379;Parent=Physo108379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 733235 734125 . - 0 ID=Physo108379;Parent=Physo108379;rank=1 scaffold_7 . exon 733235 734125 . - . ID=Physo108379.1;Parent=Physo108379;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 735751 743619 . + . ID=Physo108380;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70025;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 735751 743619 . + . ID=Physo108380;Parent=Physo108380;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 735751 738106 . + 0 ID=Physo108380;Parent=Physo108380;rank=1 scaffold_7 . exon 735751 738106 . + . ID=Physo108380.1;Parent=Physo108380;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 738339 738340 . + 0 ID=Physo108380;Parent=Physo108380;rank=2 scaffold_7 . CDS 738430 740520 . + 0 ID=Physo108380;Parent=Physo108380;rank=3 scaffold_7 . CDS 740689 743246 . + 0 ID=Physo108380;Parent=Physo108380;rank=4 scaffold_7 . CDS 743304 743619 . + 0 ID=Physo108380;Parent=Physo108380;rank=5 scaffold_7 . exon 728468 728755 . + . ID=Physo129382.3;Parent=Physo129382;constitutive=1;rank=3 scaffold_7 . exon 728825 728868 . + . ID=Physo129382.4;Parent=Physo129382;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . exon 729092 729773 . + . ID=Physo129382.5;Parent=Physo129382;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . exon 729888 730026 . + . ID=Physo129382.6;Parent=Physo129382;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_7 . exon 730055 730138 . + . ID=Physo129382.7;Parent=Physo129382;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_7 . exon 730183 733098 . + . ID=Physo129382.8;Parent=Physo129382;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=8 scaffold_7 ensembl protein_coding_gene 734316 735476 . + . ID=Physo129384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70209;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 734316 735476 . + . ID=Physo129384;Parent=Physo129384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 734316 734844 . + 0 ID=Physo129384;Parent=Physo129384;rank=1 scaffold_7 . exon 734316 734844 . + . ID=Physo129384.1;Parent=Physo129384;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 734917 735416 . + 0 ID=Physo129384;Parent=Physo129384;rank=2 scaffold_7 . exon 734917 735476 . + . ID=Physo129384.2;Parent=Physo129384;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_7 . repeat_region 739066 739087 . ? . description=trf scaffold_7 . repeat_region 744336 744382 . ? . description=trf scaffold_7 . repeat_region 744342 744388 . ? . description=trf scaffold_7 . repeat_region 744342 744404 . ? . description=dust scaffold_7 . repeat_region 744357 744385 . ? . description=trf scaffold_7 . repeat_region 747674 747723 . ? . description=dust scaffold_7 . exon 738339 738340 . + . ID=Physo108380.2;Parent=Physo108380;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . exon 738430 740520 . + . ID=Physo108380.3;Parent=Physo108380;constitutive=1;rank=3 scaffold_7 . exon 740689 743246 . + . ID=Physo108380.4;Parent=Physo108380;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . exon 743304 743619 . + . ID=Physo108380.5;Parent=Physo108380;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 ensembl protein_coding_gene 743820 746393 . + . ID=Physo129386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70211;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 743820 746393 . + . ID=Physo129386;Parent=Physo129386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 743820 746393 . + 0 ID=Physo129386;Parent=Physo129386;rank=1 scaffold_7 . exon 743820 746393 . + . ID=Physo129386.1;Parent=Physo129386;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 746485 747552 . - . ID=Physo155746;biotype=protein_coding;external_name=C_scaffold_7000075;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 746485 747552 . - . ID=Physo155746;Parent=Physo155746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 746485 746570 . - 0 ID=Physo155746;Parent=Physo155746;rank=2 scaffold_7 . exon 746485 746570 . - . ID=Physo155746.2;Parent=Physo155746;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 746610 747552 . - 0 ID=Physo155746;Parent=Physo155746;rank=1 scaffold_7 . exon 746610 747552 . - . ID=Physo155746.1;Parent=Physo155746;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . biological_region 748354 748356 0.999 - . logic_name=eponine scaffold_7 . biological_region 748553 748559 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 748161 749680 . + . ID=Physo129388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70213;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 748161 749680 . + . ID=Physo129388;Parent=Physo129388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 748161 748178 . + 0 ID=Physo129388;Parent=Physo129388;rank=1 scaffold_7 . exon 748161 748178 . + . ID=Physo129388.1;Parent=Physo129388;constitutive=1;rank=1 scaffold_7 . CDS 748257 748394 . + 0 ID=Physo129388;Parent=Physo129388;rank=2 scaffold_7 . exon 748257 748394 . + . ID=Physo129388.2;Parent=Physo129388;constitutive=1;rank=2 scaffold_7 . CDS 748495 748638 . + 0 ID=Physo129388;Parent=Physo129388;rank=3 scaffold_7 . exon 748495 748638 . + . ID=Physo129388.3;Parent=Physo129388;constitutive=1;rank=3 scaffold_7 . CDS 748711 748782 . + 0 ID=Physo129388;Parent=Physo129388;rank=4 scaffold_7 . exon 748711 748782 . + . ID=Physo129388.4;Parent=Physo129388;constitutive=1;rank=4 scaffold_7 . CDS 748860 749522 . + 0 ID=Physo129388;Parent=Physo129388;rank=5 scaffold_7 . exon 748860 749522 . + . ID=Physo129388.5;Parent=Physo129388;constitutive=1;rank=5 scaffold_7 . CDS 749603 749680 . + 0 ID=Physo129388;Parent=Physo129388;rank=6 scaffold_7 . exon 749603 749680 . + . ID=Physo129388.6;Parent=Physo129388;constitutive=1;rank=6 scaffold_7 ensembl protein_coding_gene 750293 751851 . + . ID=Physo129389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70214;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 750293 751851 . + . ID=Physo129389;Parent=Physo129389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 750293 750455 . + 0 ID=Physo129389;Parent=Physo129389;rank=1 scaffold_7 . exon 750293 750455 . + . ID=Physo129389.1;Parent=Physo129389;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 751271 751851 . + 0 ID=Physo129389;Parent=Physo129389;rank=2 scaffold_7 . exon 751271 751851 . + . ID=Physo129389.2;Parent=Physo129389;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 ensembl protein_coding_gene 755223 756034 . - . ID=Physo129390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70215;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 755223 756034 . - . ID=Physo129390;Parent=Physo129390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 755223 755230 . - 0 ID=Physo129390;Parent=Physo129390;rank=5 scaffold_7 . exon 755223 755230 . - . ID=Physo129390.5;Parent=Physo129390;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 . CDS 755293 755485 . - 0 ID=Physo129390;Parent=Physo129390;rank=4 scaffold_7 . exon 755293 755485 . - . ID=Physo129390.4;Parent=Physo129390;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_7 . CDS 755555 755772 . - 0 ID=Physo129390;Parent=Physo129390;rank=3 scaffold_7 . exon 755555 755772 . - . ID=Physo129390.3;Parent=Physo129390;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 755842 755893 . - 0 ID=Physo129390;Parent=Physo129390;rank=2 scaffold_7 . exon 755842 755893 . - . ID=Physo129390.2;Parent=Physo129390;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 755960 756034 . - 0 ID=Physo129390;Parent=Physo129390;rank=1 scaffold_7 . exon 755960 756034 . - . ID=Physo129390.1;Parent=Physo129390;constitutive=1;rank=1 scaffold_7 . repeat_region 758699 758707 . ? . description=dust scaffold_7 ensembl protein_coding_gene 758861 759865 . - . ID=Physo129391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70216;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 758861 759865 . - . ID=Physo129391;Parent=Physo129391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 758861 759865 . - 0 ID=Physo129391;Parent=Physo129391;rank=1 scaffold_7 . exon 758861 759865 . - . ID=Physo129391.1;Parent=Physo129391;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 761159 761893 . - . ID=Physo129392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70217;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 761159 761893 . - . ID=Physo129392;Parent=Physo129392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 761159 761893 . - 0 ID=Physo129392;Parent=Physo129392;rank=1 scaffold_7 . exon 761159 761893 . - . ID=Physo129392.1;Parent=Physo129392;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 762248 763252 . - . ID=Physo129393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70218;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 762248 763252 . - . ID=Physo129393;Parent=Physo129393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 762248 763252 . - 0 ID=Physo129393;Parent=Physo129393;rank=1 scaffold_7 . exon 762248 763252 . - . ID=Physo129393.1;Parent=Physo129393;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 765875 766473 . + . ID=Physo129394;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70219;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 765875 766473 . + . ID=Physo129394;Parent=Physo129394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 765875 766042 . + 0 ID=Physo129394;Parent=Physo129394;rank=1 scaffold_7 . exon 765875 766042 . + . ID=Physo129394.1;Parent=Physo129394;constitutive=1;rank=1 scaffold_7 . CDS 766121 766207 . + 0 ID=Physo129394;Parent=Physo129394;rank=2 scaffold_7 . exon 766121 766207 . + . ID=Physo129394.2;Parent=Physo129394;constitutive=1;rank=2 scaffold_7 . CDS 766417 766473 . + 0 ID=Physo129394;Parent=Physo129394;rank=3 scaffold_7 . exon 766417 766473 . + . ID=Physo129394.3;Parent=Physo129394;constitutive=1;rank=3 scaffold_7 . biological_region 771878 771878 0.999 + . logic_name=eponine scaffold_7 . biological_region 772022 772025 0.999 + . logic_name=eponine scaffold_7 . biological_region 772158 772160 0.999 + . logic_name=eponine scaffold_7 . biological_region 774721 774728 0.999 + . logic_name=eponine scaffold_7 . repeat_region 774771 774790 . ? . description=trf scaffold_7 . biological_region 775382 775385 0.999 - . logic_name=eponine scaffold_7 . biological_region 775616 775618 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 771211 772382 . - . ID=Physo108381;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70026;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 771211 772382 . - . ID=Physo108381;Parent=Physo108381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 771211 772362 . - 0 ID=Physo108381;Parent=Physo108381;rank=1 scaffold_7 . exon 771211 772382 . - . ID=Physo108381.1;Parent=Physo108381;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 776714 778066 . + . ID=Physo111873;biotype=protein_coding;external_name=estExt_Genewise1.C_70115;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 776714 778066 . + . ID=Physo111873;Parent=Physo111873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 776714 777303 . + . ID=Physo111873.1;Parent=Physo111873;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 . CDS 776897 777303 . + 0 ID=Physo111873;Parent=Physo111873;rank=1 scaffold_7 . CDS 777391 777536 . + 0 ID=Physo111873;Parent=Physo111873;rank=2 scaffold_7 . exon 777391 777536 . + . ID=Physo111873.2;Parent=Physo111873;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 777619 777728 . + 0 ID=Physo111873;Parent=Physo111873;rank=3 scaffold_7 . exon 777619 777728 . + . ID=Physo111873.3;Parent=Physo111873;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 777806 778066 . + 0 ID=Physo111873;Parent=Physo111873;rank=4 scaffold_7 . exon 777806 778066 . + . ID=Physo111873.4;Parent=Physo111873;constitutive=1;rank=4 scaffold_7 ensembl protein_coding_gene 769321 770285 . - . ID=Physo129395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70220;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 769321 770285 . - . ID=Physo129395;Parent=Physo129395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 769321 769581 . - 0 ID=Physo129395;Parent=Physo129395;rank=4 scaffold_7 . exon 769321 769581 . - . ID=Physo129395.4;Parent=Physo129395;constitutive=1;rank=4 scaffold_7 . CDS 769659 769902 . - 0 ID=Physo129395;Parent=Physo129395;rank=3 scaffold_7 . exon 769659 769902 . - . ID=Physo129395.3;Parent=Physo129395;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 769982 770041 . - 0 ID=Physo129395;Parent=Physo129395;rank=2 scaffold_7 . exon 769982 770041 . - . ID=Physo129395.2;Parent=Physo129395;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 770132 770232 . - 0 ID=Physo129395;Parent=Physo129395;rank=1 scaffold_7 . exon 770132 770285 . - . ID=Physo129395.1;Parent=Physo129395;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 770411 771055 . + . ID=Physo129396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70221;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 770411 771055 . + . ID=Physo129396;Parent=Physo129396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 770411 770571 . + 0 ID=Physo129396;Parent=Physo129396;rank=1 scaffold_7 . exon 770411 770571 . + . ID=Physo129396.1;Parent=Physo129396;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 770640 770811 . + 0 ID=Physo129396;Parent=Physo129396;rank=2 scaffold_7 . exon 770640 770811 . + . ID=Physo129396.2;Parent=Physo129396;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 771047 771055 . + 0 ID=Physo129396;Parent=Physo129396;rank=3 scaffold_7 . exon 771047 771055 . + . ID=Physo129396.3;Parent=Physo129396;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 774612 775578 . + . ID=Physo129398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70223;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 774612 775578 . + . ID=Physo129398;Parent=Physo129398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 774612 774642 . + 0 ID=Physo129398;Parent=Physo129398;rank=1 scaffold_7 . exon 774612 774642 . + . ID=Physo129398.1;Parent=Physo129398;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 774662 775578 . + 0 ID=Physo129398;Parent=Physo129398;rank=2 scaffold_7 . exon 774662 775578 . + . ID=Physo129398.2;Parent=Physo129398;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . repeat_region 782961 782968 . ? . description=dust scaffold_7 ensembl protein_coding_gene 786820 788425 . + . ID=Physo111888;biotype=protein_coding;external_name=estExt_Genewise1.C_70130;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 786820 788425 . + . ID=Physo111888;Parent=Physo111888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 786820 786885 . + . ID=Physo111888.1;Parent=Physo111888;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 786823 786885 . + 0 ID=Physo111888;Parent=Physo111888;rank=1 scaffold_7 . CDS 786953 787120 . + 0 ID=Physo111888;Parent=Physo111888;rank=2 scaffold_7 . exon 786953 787120 . + . ID=Physo111888.2;Parent=Physo111888;constitutive=1;rank=2 scaffold_7 . CDS 787197 787352 . + 0 ID=Physo111888;Parent=Physo111888;rank=3 scaffold_7 . exon 787197 787352 . + . ID=Physo111888.3;Parent=Physo111888;constitutive=1;rank=3 scaffold_7 . CDS 787424 787465 . + 0 ID=Physo111888;Parent=Physo111888;rank=4 scaffold_7 . exon 787424 787465 . + . ID=Physo111888.4;Parent=Physo111888;constitutive=1;rank=4 scaffold_7 . CDS 787540 787734 . + 0 ID=Physo111888;Parent=Physo111888;rank=5 scaffold_7 . exon 787540 787734 . + . ID=Physo111888.5;Parent=Physo111888;constitutive=1;rank=5 scaffold_7 . CDS 787806 788075 . + 0 ID=Physo111888;Parent=Physo111888;rank=6 scaffold_7 . CDS 788156 788239 . + 0 ID=Physo111888;Parent=Physo111888;rank=7 scaffold_7 . CDS 788321 788425 . + 0 ID=Physo111888;Parent=Physo111888;rank=8 scaffold_7 ensembl protein_coding_gene 784164 786109 . - . ID=Physo129403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70228;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 784164 786109 . - . ID=Physo129403;Parent=Physo129403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 784164 784506 . - . ID=Physo129403.2;Parent=Physo129403;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_7 . CDS 784302 784506 . - 0 ID=Physo129403;Parent=Physo129403;rank=2 scaffold_7 . CDS 784579 785999 . - 0 ID=Physo129403;Parent=Physo129403;rank=1 scaffold_7 . exon 784579 786109 . - . ID=Physo129403.1;Parent=Physo129403;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 778086 778823 . - . ID=Physo155752;biotype=protein_coding;external_name=C_scaffold_7000081;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 778086 778823 . - . ID=Physo155752;Parent=Physo155752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 778086 778090 . - 0 ID=Physo155752;Parent=Physo155752;rank=3 scaffold_7 . exon 778086 778090 . - . ID=Physo155752.3;Parent=Physo155752;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 778285 778420 . - 0 ID=Physo155752;Parent=Physo155752;rank=2 scaffold_7 . exon 778285 778420 . - . ID=Physo155752.2;Parent=Physo155752;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 778476 778823 . - 0 ID=Physo155752;Parent=Physo155752;rank=1 scaffold_7 . exon 778476 778823 . - . ID=Physo155752.1;Parent=Physo155752;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 779094 781538 . - . ID=Physo155754;biotype=protein_coding;external_name=C_scaffold_7000083;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 779094 781538 . - . ID=Physo155754;Parent=Physo155754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 779094 779388 . - 0 ID=Physo155754;Parent=Physo155754;rank=7 scaffold_7 . exon 779094 779388 . - . ID=Physo155754.7;Parent=Physo155754;constitutive=1;ensembl_phase=2;rank=7 scaffold_7 . CDS 779466 779553 . - 0 ID=Physo155754;Parent=Physo155754;rank=6 scaffold_7 . exon 779466 779553 . - . ID=Physo155754.6;Parent=Physo155754;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_7 . CDS 779636 780210 . - 0 ID=Physo155754;Parent=Physo155754;rank=5 scaffold_7 . exon 779636 780210 . - . ID=Physo155754.5;Parent=Physo155754;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 780501 780571 . - 0 ID=Physo155754;Parent=Physo155754;rank=4 scaffold_7 . exon 780501 780571 . - . ID=Physo155754.4;Parent=Physo155754;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . CDS 780637 781146 . - 0 ID=Physo155754;Parent=Physo155754;rank=3 scaffold_7 . exon 780637 781146 . - . ID=Physo155754.3;Parent=Physo155754;constitutive=1;rank=3 scaffold_7 . CDS 781223 781288 . - 0 ID=Physo155754;Parent=Physo155754;rank=2 scaffold_7 . exon 781223 781288 . - . ID=Physo155754.2;Parent=Physo155754;constitutive=1;rank=2 scaffold_7 . CDS 781371 781538 . - 0 ID=Physo155754;Parent=Physo155754;rank=1 scaffold_7 . exon 781371 781538 . - . ID=Physo155754.1;Parent=Physo155754;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 782029 783458 . + . ID=Physo155755;biotype=protein_coding;external_name=C_scaffold_7000084;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 782029 783458 . + . ID=Physo155755;Parent=Physo155755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 782029 782274 . + 0 ID=Physo155755;Parent=Physo155755;rank=1 scaffold_7 . exon 782029 782274 . + . ID=Physo155755.1;Parent=Physo155755;constitutive=1;rank=1 scaffold_7 . CDS 782352 782705 . + 0 ID=Physo155755;Parent=Physo155755;rank=2 scaffold_7 . exon 782352 782705 . + . ID=Physo155755.2;Parent=Physo155755;constitutive=1;rank=2 scaffold_7 . CDS 782849 782937 . + 0 ID=Physo155755;Parent=Physo155755;rank=3 scaffold_7 . exon 782849 782937 . + . ID=Physo155755.3;Parent=Physo155755;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_7 . CDS 783012 783167 . + 0 ID=Physo155755;Parent=Physo155755;rank=4 scaffold_7 . exon 783012 783167 . + . ID=Physo155755.4;Parent=Physo155755;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_7 . CDS 783250 783325 . + 0 ID=Physo155755;Parent=Physo155755;rank=5 scaffold_7 . exon 783250 783325 . + . ID=Physo155755.5;Parent=Physo155755;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 783405 783458 . + 0 ID=Physo155755;Parent=Physo155755;rank=6 scaffold_7 . exon 783405 783458 . + . ID=Physo155755.6;Parent=Physo155755;constitutive=1;rank=6 scaffold_7 . biological_region 790560 790567 0.999 - . logic_name=eponine scaffold_7 . biological_region 790616 790621 0.999 + . logic_name=eponine scaffold_7 . repeat_region 791038 791079 . ? . description=trf scaffold_7 . biological_region 791079 791084 0.999 + . logic_name=eponine scaffold_7 . biological_region 791106 791106 0.999 - . logic_name=eponine scaffold_7 . biological_region 792995 792998 0.999 + . logic_name=eponine scaffold_7 . biological_region 793005 793010 0.999 + . logic_name=eponine scaffold_7 . biological_region 794437 794439 0.999 - . logic_name=eponine scaffold_7 . repeat_region 795058 795087 . ? . description=trf scaffold_7 . biological_region 795488 795490 0.999 - . logic_name=eponine scaffold_7 . biological_region 795493 795497 0.999 + . logic_name=eponine scaffold_7 . biological_region 795861 795865 0.999 - . logic_name=eponine scaffold_7 . biological_region 796265 796268 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 790973 792568 . + . ID=Physo108382;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70027;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 790973 792568 . + . ID=Physo108382;Parent=Physo108382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 790973 792063 . + . ID=Physo108382.1;Parent=Physo108382;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 790999 792063 . + 0 ID=Physo108382;Parent=Physo108382;rank=1 scaffold_7 . CDS 792141 792413 . + 0 ID=Physo108382;Parent=Physo108382;rank=2 scaffold_7 . exon 792141 792568 . + . ID=Physo108382.2;Parent=Physo108382;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_7 . exon 787806 788075 . + . ID=Physo111888.6;Parent=Physo111888;constitutive=1;rank=6 scaffold_7 . exon 788156 788239 . + . ID=Physo111888.7;Parent=Physo111888;constitutive=1;rank=7 scaffold_7 . exon 788321 788425 . + . ID=Physo111888.8;Parent=Physo111888;constitutive=1;rank=8 scaffold_7 ensembl protein_coding_gene 788899 790213 . - . ID=Physo129405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70230;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 788899 790213 . - . ID=Physo129405;Parent=Physo129405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 788899 789832 . - 0 ID=Physo129405;Parent=Physo129405;rank=2 scaffold_7 . exon 788899 789832 . - . ID=Physo129405.2;Parent=Physo129405;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 789900 790213 . - 0 ID=Physo129405;Parent=Physo129405;rank=1 scaffold_7 . exon 789900 790213 . - . ID=Physo129405.1;Parent=Physo129405;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 792656 795887 . - . ID=Physo129407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70232;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 792656 795887 . - . ID=Physo129407;Parent=Physo129407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 792656 793318 . - 0 ID=Physo129407;Parent=Physo129407;rank=7 scaffold_7 . exon 792656 793318 . - . ID=Physo129407.7;Parent=Physo129407;constitutive=1;rank=7 scaffold_7 . CDS 793404 793629 . - 0 ID=Physo129407;Parent=Physo129407;rank=6 scaffold_7 . exon 793404 793629 . - . ID=Physo129407.6;Parent=Physo129407;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 . CDS 794046 794701 . - 0 ID=Physo129407;Parent=Physo129407;rank=5 scaffold_7 . exon 794046 794701 . - . ID=Physo129407.5;Parent=Physo129407;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_7 . CDS 794772 794930 . - 0 ID=Physo129407;Parent=Physo129407;rank=4 scaffold_7 . exon 794772 794930 . - . ID=Physo129407.4;Parent=Physo129407;constitutive=1;rank=4 scaffold_7 . CDS 795021 795086 . - 0 ID=Physo129407;Parent=Physo129407;rank=3 scaffold_7 . exon 795021 795086 . - . ID=Physo129407.3;Parent=Physo129407;constitutive=1;rank=3 scaffold_7 . CDS 795158 795250 . - 0 ID=Physo129407;Parent=Physo129407;rank=2 scaffold_7 . exon 795158 795250 . - . ID=Physo129407.2;Parent=Physo129407;constitutive=1;rank=2 scaffold_7 . CDS 795354 795887 . - 0 ID=Physo129407;Parent=Physo129407;rank=1 scaffold_7 . exon 795354 795887 . - . ID=Physo129407.1;Parent=Physo129407;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 796126 797862 . - . ID=Physo129408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70233;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 796126 797862 . - . ID=Physo129408;Parent=Physo129408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 796126 797862 . - 0 ID=Physo129408;Parent=Physo129408;rank=1 scaffold_7 . exon 796126 797862 . - . ID=Physo129408.1;Parent=Physo129408;constitutive=1;rank=1 scaffold_7 . repeat_region 800707 800714 . ? . description=dust scaffold_7 . repeat_region 806021 806028 . ? . description=dust scaffold_7 . repeat_region 806825 806832 . ? . description=dust scaffold_7 ensembl protein_coding_gene 799059 801916 . + . ID=Physo129409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70234;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 799059 801916 . + . ID=Physo129409;Parent=Physo129409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 799059 800062 . + 0 ID=Physo129409;Parent=Physo129409;rank=1 scaffold_7 . exon 799059 800062 . + . ID=Physo129409.1;Parent=Physo129409;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 800444 800704 . + 0 ID=Physo129409;Parent=Physo129409;rank=2 scaffold_7 . exon 800444 800704 . + . ID=Physo129409.2;Parent=Physo129409;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 800885 800942 . + 0 ID=Physo129409;Parent=Physo129409;rank=3 scaffold_7 . exon 800885 800942 . + . ID=Physo129409.3;Parent=Physo129409;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 800986 801321 . + 0 ID=Physo129409;Parent=Physo129409;rank=4 scaffold_7 . exon 800986 801321 . + . ID=Physo129409.4;Parent=Physo129409;constitutive=1;rank=4 scaffold_7 . CDS 801382 801456 . + 0 ID=Physo129409;Parent=Physo129409;rank=5 scaffold_7 . exon 801382 801456 . + . ID=Physo129409.5;Parent=Physo129409;constitutive=1;rank=5 scaffold_7 . CDS 801535 801774 . + 0 ID=Physo129409;Parent=Physo129409;rank=6 scaffold_7 . exon 801535 801774 . + . ID=Physo129409.6;Parent=Physo129409;constitutive=1;rank=6 scaffold_7 . CDS 801797 801916 . + 0 ID=Physo129409;Parent=Physo129409;rank=7 scaffold_7 . exon 801797 801916 . + . ID=Physo129409.7;Parent=Physo129409;constitutive=1;rank=7 scaffold_7 ensembl protein_coding_gene 802672 804835 . - . ID=Physo129410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70235;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 802672 804835 . - . ID=Physo129410;Parent=Physo129410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 802672 803985 . - 0 ID=Physo129410;Parent=Physo129410;rank=4 scaffold_7 . exon 802672 803985 . - . ID=Physo129410.4;Parent=Physo129410;constitutive=1;rank=4 scaffold_7 . CDS 804077 804463 . - 0 ID=Physo129410;Parent=Physo129410;rank=3 scaffold_7 . exon 804077 804463 . - . ID=Physo129410.3;Parent=Physo129410;constitutive=1;rank=3 scaffold_7 . CDS 804639 804671 . - 0 ID=Physo129410;Parent=Physo129410;rank=2 scaffold_7 . exon 804639 804671 . - . ID=Physo129410.2;Parent=Physo129410;constitutive=1;rank=2 scaffold_7 . CDS 804815 804835 . - 0 ID=Physo129410;Parent=Physo129410;rank=1 scaffold_7 . exon 804815 804835 . - . ID=Physo129410.1;Parent=Physo129410;constitutive=1;rank=1 scaffold_7 . repeat_region 809041 809153 . ? . description=trf scaffold_7 . repeat_region 809041 809167 . ? . description=trf scaffold_7 . repeat_region 809143 809217 . ? . description=trf scaffold_7 . biological_region 810459 810461 0.999 - . logic_name=eponine scaffold_7 . biological_region 811166 811169 0.999 + . logic_name=eponine scaffold_7 . biological_region 811207 811210 0.999 - . logic_name=eponine scaffold_7 . biological_region 813318 813319 0.999 + . logic_name=eponine scaffold_7 . biological_region 816407 816411 0.999 - . logic_name=eponine scaffold_7 . biological_region 817161 817164 0.999 + . logic_name=eponine scaffold_7 . biological_region 817526 817529 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 810883 813364 . - . ID=Physo129411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70236;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 810883 813364 . - . ID=Physo129411;Parent=Physo129411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 810883 811269 . - 0 ID=Physo129411;Parent=Physo129411;rank=8 scaffold_7 . exon 810883 811269 . - . ID=Physo129411.8;Parent=Physo129411;constitutive=1;rank=8 scaffold_7 . CDS 811310 811978 . - 0 ID=Physo129411;Parent=Physo129411;rank=7 scaffold_7 . exon 811310 811978 . - . ID=Physo129411.7;Parent=Physo129411;constitutive=1;rank=7 scaffold_7 . CDS 812020 812154 . - 0 ID=Physo129411;Parent=Physo129411;rank=6 scaffold_7 . exon 812020 812154 . - . ID=Physo129411.6;Parent=Physo129411;constitutive=1;rank=6 scaffold_7 . CDS 812180 812357 . - 0 ID=Physo129411;Parent=Physo129411;rank=5 scaffold_7 . exon 812180 812357 . - . ID=Physo129411.5;Parent=Physo129411;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 812451 812702 . - 0 ID=Physo129411;Parent=Physo129411;rank=4 scaffold_7 . exon 812451 812702 . - . ID=Physo129411.4;Parent=Physo129411;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_7 . CDS 812736 812793 . - 0 ID=Physo129411;Parent=Physo129411;rank=3 scaffold_7 . exon 812736 812793 . - . ID=Physo129411.3;Parent=Physo129411;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_7 . CDS 812834 812944 . - 0 ID=Physo129411;Parent=Physo129411;rank=2 scaffold_7 . exon 812834 812944 . - . ID=Physo129411.2;Parent=Physo129411;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 813037 813364 . - 0 ID=Physo129411;Parent=Physo129411;rank=1 scaffold_7 . exon 813037 813364 . - . ID=Physo129411.1;Parent=Physo129411;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 815443 819770 . - . ID=Physo129412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70237;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 815443 819770 . - . ID=Physo129412;Parent=Physo129412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 815443 816764 . - 0 ID=Physo129412;Parent=Physo129412;rank=6 scaffold_7 . exon 815443 816764 . - . ID=Physo129412.9;Parent=Physo129412;constitutive=1;ensembl_phase=1;rank=9 scaffold_7 . CDS 816899 817324 . - 0 ID=Physo129412;Parent=Physo129412;rank=5 scaffold_7 . exon 816899 817324 . - . ID=Physo129412.8;Parent=Physo129412;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_7 . CDS 817511 817587 . - 0 ID=Physo129412;Parent=Physo129412;rank=4 scaffold_7 . exon 817511 817587 . - . ID=Physo129412.7;Parent=Physo129412;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_7 . CDS 817616 818241 . - 0 ID=Physo129412;Parent=Physo129412;rank=3 scaffold_7 . exon 817616 818241 . - . ID=Physo129412.6;Parent=Physo129412;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_7 . CDS 818285 818456 . - 0 ID=Physo129412;Parent=Physo129412;rank=2 scaffold_7 . CDS 818514 819334 . - 0 ID=Physo129412;Parent=Physo129412;rank=1 scaffold_7 . exon 818285 818456 . - . ID=Physo129412.5;Parent=Physo129412;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . exon 818514 819412 . - . ID=Physo129412.4;Parent=Physo129412;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=4 scaffold_7 . exon 819484 819502 . - . ID=Physo129412.3;Parent=Physo129412;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=3 scaffold_7 . exon 819564 819583 . - . ID=Physo129412.2;Parent=Physo129412;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_7 . exon 819678 819770 . - . ID=Physo129412.1;Parent=Physo129412;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 823714 828214 . - . ID=Physo129413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70238;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 823714 828214 . - . ID=Physo129413;Parent=Physo129413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 823714 824713 . - 0 ID=Physo129413;Parent=Physo129413;rank=5 scaffold_7 . exon 823714 824713 . - . ID=Physo129413.5;Parent=Physo129413;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 824781 825024 . - 0 ID=Physo129413;Parent=Physo129413;rank=4 scaffold_7 . exon 824781 825024 . - . ID=Physo129413.4;Parent=Physo129413;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_7 . CDS 825093 825178 . - 0 ID=Physo129413;Parent=Physo129413;rank=3 scaffold_7 . exon 825093 825178 . - . ID=Physo129413.3;Parent=Physo129413;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 825540 828151 . - 0 ID=Physo129413;Parent=Physo129413;rank=2 scaffold_7 . exon 825540 828151 . - . ID=Physo129413.2;Parent=Physo129413;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 828176 828214 . - 0 ID=Physo129413;Parent=Physo129413;rank=1 scaffold_7 . repeat_region 830038 830045 . ? . description=dust scaffold_7 . repeat_region 830417 830510 . ? . description=dust scaffold_7 . repeat_region 830430 830489 . ? . description=trf scaffold_7 . repeat_region 830431 830507 . ? . description=trf scaffold_7 . repeat_region 832096 832125 . ? . description=dust scaffold_7 . repeat_region 833083 833091 . ? . description=dust scaffold_7 . exon 828176 828214 . - . ID=Physo129413.1;Parent=Physo129413;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 830079 831768 . - . ID=Physo129414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70239;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 830079 831768 . - . ID=Physo129414;Parent=Physo129414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 830079 830353 . - 0 ID=Physo129414;Parent=Physo129414;rank=5 scaffold_7 . exon 830079 830353 . - . ID=Physo129414.5;Parent=Physo129414;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 . CDS 830410 830857 . - 0 ID=Physo129414;Parent=Physo129414;rank=4 scaffold_7 . exon 830410 830857 . - . ID=Physo129414.4;Parent=Physo129414;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_7 . CDS 830925 830961 . - 0 ID=Physo129414;Parent=Physo129414;rank=3 scaffold_7 . exon 830925 830961 . - . ID=Physo129414.3;Parent=Physo129414;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 831025 831292 . - 0 ID=Physo129414;Parent=Physo129414;rank=2 scaffold_7 . exon 831025 831292 . - . ID=Physo129414.2;Parent=Physo129414;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 831747 831768 . - 0 ID=Physo129414;Parent=Physo129414;rank=1 scaffold_7 . exon 831747 831768 . - . ID=Physo129414.1;Parent=Physo129414;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 832082 834358 . + . ID=Physo129415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70240;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 832082 834358 . + . ID=Physo129415;Parent=Physo129415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 832082 832371 . + 0 ID=Physo129415;Parent=Physo129415;rank=1 scaffold_7 . exon 832082 832371 . + . ID=Physo129415.1;Parent=Physo129415;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 832392 833013 . + 0 ID=Physo129415;Parent=Physo129415;rank=2 scaffold_7 . exon 832392 833013 . + . ID=Physo129415.2;Parent=Physo129415;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 833096 833099 . + 0 ID=Physo129415;Parent=Physo129415;rank=3 scaffold_7 . exon 833096 833099 . + . ID=Physo129415.3;Parent=Physo129415;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 833140 833200 . + 0 ID=Physo129415;Parent=Physo129415;rank=4 scaffold_7 . exon 833140 833200 . + . ID=Physo129415.4;Parent=Physo129415;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_7 . CDS 833288 833420 . + 0 ID=Physo129415;Parent=Physo129415;rank=5 scaffold_7 . exon 833288 833420 . + . ID=Physo129415.5;Parent=Physo129415;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . CDS 833463 833666 . + 0 ID=Physo129415;Parent=Physo129415;rank=6 scaffold_7 . exon 833463 833666 . + . ID=Physo129415.6;Parent=Physo129415;constitutive=1;rank=6 scaffold_7 . CDS 833762 834358 . + 0 ID=Physo129415;Parent=Physo129415;rank=7 scaffold_7 . exon 833762 834358 . + . ID=Physo129415.7;Parent=Physo129415;constitutive=1;rank=7 scaffold_7 ensembl protein_coding_gene 834936 836537 . + . ID=Physo129416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70241;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 834936 836537 . + . ID=Physo129416;Parent=Physo129416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 834936 836537 . + . ID=Physo129416.1;Parent=Physo129416;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 834948 836537 . + 0 ID=Physo129416;Parent=Physo129416;rank=1 scaffold_7 ensembl protein_coding_gene 836617 838422 . - . ID=Physo129417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70242;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 836617 838422 . - . ID=Physo129417;Parent=Physo129417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 836617 838422 . - . ID=Physo129417.1;Parent=Physo129417;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 . CDS 836635 838422 . - 0 ID=Physo129417;Parent=Physo129417;rank=1 scaffold_7 . biological_region 838299 838301 0.999 + . logic_name=eponine scaffold_7 . biological_region 838365 838369 0.999 + . logic_name=eponine scaffold_7 . biological_region 838395 838395 0.999 - . logic_name=eponine scaffold_7 . biological_region 838880 838891 0.999 - . logic_name=eponine scaffold_7 . biological_region 838914 838917 0.999 + . logic_name=eponine scaffold_7 . biological_region 839582 839582 0.999 + . logic_name=eponine scaffold_7 . biological_region 839827 839833 0.999 - . logic_name=eponine scaffold_7 . biological_region 839917 839919 0.999 - . logic_name=eponine scaffold_7 . biological_region 840094 840098 0.999 + . logic_name=eponine scaffold_7 . biological_region 840112 840116 0.999 + . logic_name=eponine scaffold_7 . biological_region 840454 840457 0.999 + . logic_name=eponine scaffold_7 . biological_region 840539 840541 0.999 - . logic_name=eponine scaffold_7 . biological_region 840586 840589 0.999 - . logic_name=eponine scaffold_7 . biological_region 840644 840646 0.999 + . logic_name=eponine scaffold_7 . biological_region 840720 840725 0.999 - . logic_name=eponine scaffold_7 . biological_region 845131 845133 0.999 - . logic_name=eponine scaffold_7 . biological_region 845614 845615 0.999 + . logic_name=eponine scaffold_7 . biological_region 847225 847228 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 840063 840563 . - . ID=Physo129418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70243;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 840063 840563 . - . ID=Physo129418;Parent=Physo129418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 840063 840563 . - . ID=Physo129418.1;Parent=Physo129418;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 840096 840479 . - 0 ID=Physo129418;Parent=Physo129418;rank=1 scaffold_7 ensembl protein_coding_gene 844776 845712 . - . ID=Physo129420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70245;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 844776 845712 . - . ID=Physo129420;Parent=Physo129420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 844776 845253 . - 0 ID=Physo129420;Parent=Physo129420;rank=2 scaffold_7 . exon 844776 845253 . - . ID=Physo129420.2;Parent=Physo129420;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 845348 845712 . - 0 ID=Physo129420;Parent=Physo129420;rank=1 scaffold_7 . exon 845348 845712 . - . ID=Physo129420.1;Parent=Physo129420;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 846045 848144 . - . ID=Physo129421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70246;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 846045 848144 . - . ID=Physo129421;Parent=Physo129421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 846045 847340 . - 0 ID=Physo129421;Parent=Physo129421;rank=4 scaffold_7 . exon 846045 847340 . - . ID=Physo129421.4;Parent=Physo129421;constitutive=1;rank=4 scaffold_7 . CDS 847405 847770 . - 0 ID=Physo129421;Parent=Physo129421;rank=3 scaffold_7 . exon 847405 847770 . - . ID=Physo129421.3;Parent=Physo129421;constitutive=1;rank=3 scaffold_7 . CDS 847849 847988 . - 0 ID=Physo129421;Parent=Physo129421;rank=2 scaffold_7 . CDS 848063 848144 . - 0 ID=Physo129421;Parent=Physo129421;rank=1 scaffold_7 ensembl protein_coding_gene 840967 844515 . + . ID=Physo155761;biotype=protein_coding;external_name=C_scaffold_7000090;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 840967 844515 . + . ID=Physo155761;Parent=Physo155761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 840967 841460 . + 0 ID=Physo155761;Parent=Physo155761;rank=1 scaffold_7 . exon 840967 841460 . + . ID=Physo155761.1;Parent=Physo155761;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 841753 842100 . + 0 ID=Physo155761;Parent=Physo155761;rank=2 scaffold_7 . exon 841753 842100 . + . ID=Physo155761.2;Parent=Physo155761;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_7 . CDS 842203 843441 . + 0 ID=Physo155761;Parent=Physo155761;rank=3 scaffold_7 . exon 842203 843441 . + . ID=Physo155761.3;Parent=Physo155761;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_7 . CDS 843517 844417 . + 0 ID=Physo155761;Parent=Physo155761;rank=4 scaffold_7 . exon 843517 844417 . + . ID=Physo155761.4;Parent=Physo155761;constitutive=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 844471 844515 . + 0 ID=Physo155761;Parent=Physo155761;rank=5 scaffold_7 . exon 844471 844515 . + . ID=Physo155761.5;Parent=Physo155761;constitutive=1;rank=5 scaffold_7 . repeat_region 849886 849893 . ? . description=dust scaffold_7 . repeat_region 850496 850541 . ? . description=dust scaffold_7 . repeat_region 851046 851199 . ? . description=trf scaffold_7 . repeat_region 851078 851126 . ? . description=trf scaffold_7 . exon 847849 847988 . - . ID=Physo129421.2;Parent=Physo129421;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . exon 848063 848144 . - . ID=Physo129421.1;Parent=Physo129421;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 850070 854788 . + . ID=Physo129422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70247;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 850070 854788 . + . ID=Physo129422;Parent=Physo129422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 850070 850144 . + 0 ID=Physo129422;Parent=Physo129422;rank=1 scaffold_7 . exon 850070 850144 . + . ID=Physo129422.1;Parent=Physo129422;constitutive=1;rank=1 scaffold_7 . CDS 850201 851773 . + 0 ID=Physo129422;Parent=Physo129422;rank=2 scaffold_7 . exon 850201 851773 . + . ID=Physo129422.2;Parent=Physo129422;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 851852 852118 . + 0 ID=Physo129422;Parent=Physo129422;rank=3 scaffold_7 . exon 851852 852118 . + . ID=Physo129422.3;Parent=Physo129422;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 852195 854046 . + 0 ID=Physo129422;Parent=Physo129422;rank=4 scaffold_7 . exon 852195 854046 . + . ID=Physo129422.4;Parent=Physo129422;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_7 . CDS 854125 854788 . + 0 ID=Physo129422;Parent=Physo129422;rank=5 scaffold_7 . exon 854125 854788 . + . ID=Physo129422.5;Parent=Physo129422;constitutive=1;ensembl_phase=2;rank=5 scaffold_7 . biological_region 860298 860304 0.999 + . logic_name=eponine scaffold_7 . biological_region 860344 860348 0.999 - . logic_name=eponine scaffold_7 . biological_region 860398 860403 0.999 + . logic_name=eponine scaffold_7 . biological_region 860406 860408 0.999 - . logic_name=eponine scaffold_7 . biological_region 860618 860624 0.999 - . logic_name=eponine scaffold_7 . biological_region 860746 860749 0.999 - . logic_name=eponine scaffold_7 . biological_region 863381 863384 0.999 + . logic_name=eponine scaffold_7 . biological_region 863416 863420 0.999 + . logic_name=eponine scaffold_7 . biological_region 863512 863520 0.999 + . logic_name=eponine scaffold_7 . biological_region 863531 863534 0.999 + . logic_name=eponine scaffold_7 . biological_region 863560 863566 0.999 - . logic_name=eponine scaffold_7 . biological_region 863588 863592 0.999 - . logic_name=eponine scaffold_7 . biological_region 863605 863608 0.999 - . logic_name=eponine scaffold_7 . biological_region 863648 863653 0.999 - . logic_name=eponine scaffold_7 . biological_region 863959 863960 0.999 - . logic_name=eponine scaffold_7 . biological_region 866593 866594 0.999 + . logic_name=eponine scaffold_7 . biological_region 866650 866655 0.999 + . logic_name=eponine scaffold_7 . biological_region 866674 866678 0.999 - . logic_name=eponine scaffold_7 . biological_region 866869 866873 0.999 + . logic_name=eponine scaffold_7 . biological_region 866891 866895 0.999 - . logic_name=eponine scaffold_7 . biological_region 866930 866933 0.999 + . logic_name=eponine scaffold_7 . biological_region 866944 866952 0.999 + . logic_name=eponine scaffold_7 . biological_region 867042 867048 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 860037 860987 . + . ID=Physo129423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70248;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 860037 860987 . + . ID=Physo129423;Parent=Physo129423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 860037 860987 . + 0 ID=Physo129423;Parent=Physo129423;rank=1 scaffold_7 . exon 860037 860987 . + . ID=Physo129423.1;Parent=Physo129423;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 861206 863632 . - . ID=Physo129424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70249;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 861206 863632 . - . ID=Physo129424;Parent=Physo129424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 861206 863632 . - 0 ID=Physo129424;Parent=Physo129424;rank=1 scaffold_7 . exon 861206 863632 . - . ID=Physo129424.1;Parent=Physo129424;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 863807 866365 . + . ID=Physo129425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70250;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 863807 866365 . + . ID=Physo129425;Parent=Physo129425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 863807 866365 . + 0 ID=Physo129425;Parent=Physo129425;rank=1 scaffold_7 . exon 863807 866365 . + . ID=Physo129425.1;Parent=Physo129425;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 866557 867197 . + . ID=Physo129426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70251;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 866557 867197 . + . ID=Physo129426;Parent=Physo129426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 866557 867197 . + . ID=Physo129426.1;Parent=Physo129426;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 866581 867111 . + 0 ID=Physo129426;Parent=Physo129426;rank=1 scaffold_7 ensembl protein_coding_gene 867340 871112 . + . ID=Physo129427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70252;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 867340 871112 . + . ID=Physo129427;Parent=Physo129427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 867340 867510 . + 0 ID=Physo129427;Parent=Physo129427;rank=1 scaffold_7 . exon 867340 867510 . + . ID=Physo129427.1;Parent=Physo129427;constitutive=1;rank=1 scaffold_7 . CDS 867583 868343 . + 0 ID=Physo129427;Parent=Physo129427;rank=2 scaffold_7 . CDS 868507 868825 . + 0 ID=Physo129427;Parent=Physo129427;rank=3 scaffold_7 . CDS 868917 871112 . + 0 ID=Physo129427;Parent=Physo129427;rank=4 scaffold_7 . repeat_region 873106 873151 . ? . description=trf scaffold_7 . repeat_region 874937 874967 . ? . description=trf scaffold_7 . repeat_region 875154 875182 . ? . description=trf scaffold_7 ensembl protein_coding_gene 871143 873415 . - . ID=Physo108383;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70028;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 871143 873415 . - . ID=Physo108383;Parent=Physo108383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 871143 873415 . - . ID=Physo108383.1;Parent=Physo108383;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 . CDS 871247 873415 . - 0 ID=Physo108383;Parent=Physo108383;rank=1 scaffold_7 . exon 867583 868343 . + . ID=Physo129427.2;Parent=Physo129427;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . exon 868507 868825 . + . ID=Physo129427.3;Parent=Physo129427;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . exon 868917 871112 . + . ID=Physo129427.4;Parent=Physo129427;constitutive=1;rank=4 scaffold_7 . biological_region 883169 883173 0.999 + . logic_name=eponine scaffold_7 . biological_region 883194 883196 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 886751 891317 . + . ID=Physo129429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70254;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 886751 891317 . + . ID=Physo129429;Parent=Physo129429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 886751 887067 . + 0 ID=Physo129429;Parent=Physo129429;rank=1 scaffold_7 . exon 886751 887067 . + . ID=Physo129429.1;Parent=Physo129429;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 887116 887587 . + 0 ID=Physo129429;Parent=Physo129429;rank=2 scaffold_7 . exon 887116 887587 . + . ID=Physo129429.2;Parent=Physo129429;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 887657 887911 . + 0 ID=Physo129429;Parent=Physo129429;rank=3 scaffold_7 . CDS 888259 888531 . + 0 ID=Physo129429;Parent=Physo129429;rank=4 scaffold_7 . CDS 888640 889809 . + 0 ID=Physo129429;Parent=Physo129429;rank=5 scaffold_7 . CDS 890290 891120 . + 0 ID=Physo129429;Parent=Physo129429;rank=6 scaffold_7 . CDS 891210 891317 . + 0 ID=Physo129429;Parent=Physo129429;rank=7 scaffold_7 . repeat_region 892735 892761 . ? . description=trf scaffold_7 . exon 887657 887911 . + . ID=Physo129429.3;Parent=Physo129429;constitutive=1;rank=3 scaffold_7 . exon 888259 888531 . + . ID=Physo129429.4;Parent=Physo129429;constitutive=1;rank=4 scaffold_7 . exon 888640 889809 . + . ID=Physo129429.5;Parent=Physo129429;constitutive=1;rank=5 scaffold_7 . exon 890290 891120 . + . ID=Physo129429.6;Parent=Physo129429;constitutive=1;rank=6 scaffold_7 . exon 891210 891317 . + . ID=Physo129429.7;Parent=Physo129429;constitutive=1;rank=7 scaffold_7 ensembl protein_coding_gene 891816 892896 . - . ID=Physo129430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70255;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 891816 892896 . - . ID=Physo129430;Parent=Physo129430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 891816 892698 . - 0 ID=Physo129430;Parent=Physo129430;rank=2 scaffold_7 . exon 891816 892698 . - . ID=Physo129430.2;Parent=Physo129430;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 892751 892896 . - 0 ID=Physo129430;Parent=Physo129430;rank=1 scaffold_7 . exon 892751 892896 . - . ID=Physo129430.1;Parent=Physo129430;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . biological_region 899299 899304 0.999 - . logic_name=eponine scaffold_7 . repeat_region 899628 899639 . ? . description=dust scaffold_7 . biological_region 900568 900569 0.999 - . logic_name=eponine scaffold_7 . biological_region 901067 901071 0.999 - . logic_name=eponine scaffold_7 . biological_region 901074 901077 0.999 + . logic_name=eponine scaffold_7 . biological_region 901121 901123 0.999 + . logic_name=eponine scaffold_7 . biological_region 901140 901143 0.999 - . logic_name=eponine scaffold_7 . biological_region 901172 901173 0.999 - . logic_name=eponine scaffold_7 . biological_region 901200 901203 0.999 - . logic_name=eponine scaffold_7 . biological_region 901218 901219 0.999 - . logic_name=eponine scaffold_7 . repeat_region 901285 901292 . ? . description=dust scaffold_7 . biological_region 901430 901434 0.999 - . logic_name=eponine scaffold_7 . biological_region 901459 901463 0.999 - . logic_name=eponine scaffold_7 . biological_region 901470 901471 0.999 + . logic_name=eponine scaffold_7 . biological_region 901484 901490 0.999 + . logic_name=eponine scaffold_7 . biological_region 901514 901517 0.999 + . logic_name=eponine scaffold_7 . biological_region 901680 901690 0.999 + . logic_name=eponine scaffold_7 . biological_region 901911 901911 0.999 + . logic_name=eponine scaffold_7 . biological_region 902561 902561 0.999 - . logic_name=eponine scaffold_7 . biological_region 903510 903512 0.999 - . logic_name=eponine scaffold_7 . repeat_region 905277 905284 . ? . description=dust scaffold_7 . biological_region 905351 905352 0.999 + . logic_name=eponine scaffold_7 . biological_region 905367 905370 0.999 + . logic_name=eponine scaffold_7 . biological_region 905426 905431 0.999 + . logic_name=eponine scaffold_7 . biological_region 905446 905448 0.999 - . logic_name=eponine scaffold_7 . biological_region 905492 905495 0.999 - . logic_name=eponine scaffold_7 . biological_region 905498 905502 0.999 + . logic_name=eponine scaffold_7 . biological_region 905707 905710 0.999 + . logic_name=eponine scaffold_7 . biological_region 905900 905903 0.999 - . logic_name=eponine scaffold_7 . biological_region 906166 906169 0.999 - . logic_name=eponine scaffold_7 . biological_region 906464 906471 0.999 + . logic_name=eponine scaffold_7 . biological_region 906589 906594 0.999 + . logic_name=eponine scaffold_7 . biological_region 907322 907326 0.999 - . logic_name=eponine scaffold_7 . biological_region 907345 907352 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 902217 903671 . + . ID=Physo129431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70256;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 902217 903671 . + . ID=Physo129431;Parent=Physo129431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 902217 903671 . + 0 ID=Physo129431;Parent=Physo129431;rank=1 scaffold_7 . exon 902217 903671 . + . ID=Physo129431.1;Parent=Physo129431;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 907191 908801 . - . ID=Physo155769;biotype=protein_coding;external_name=C_scaffold_7000098;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 907191 908801 . - . ID=Physo155769;Parent=Physo155769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 907191 907339 . - 0 ID=Physo155769;Parent=Physo155769;rank=4 scaffold_7 . exon 907191 907339 . - . ID=Physo155769.4;Parent=Physo155769;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_7 . CDS 907659 907897 . - 0 ID=Physo155769;Parent=Physo155769;rank=3 scaffold_7 . CDS 907970 908222 . - 0 ID=Physo155769;Parent=Physo155769;rank=2 scaffold_7 . CDS 908307 908801 . - 0 ID=Physo155769;Parent=Physo155769;rank=1 scaffold_7 . repeat_region 912616 912663 . ? . description=trf scaffold_7 . repeat_region 912735 912810 . ? . description=trf scaffold_7 . repeat_region 912780 912844 . ? . description=trf scaffold_7 . repeat_region 912788 912858 . ? . description=trf scaffold_7 . repeat_region 912898 912963 . ? . description=trf scaffold_7 ensembl protein_coding_gene 911538 912056 . - . ID=Physo129435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70260;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 911538 912056 . - . ID=Physo129435;Parent=Physo129435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 911538 912056 . - 0 ID=Physo129435;Parent=Physo129435;rank=1 scaffold_7 . exon 911538 912056 . - . ID=Physo129435.1;Parent=Physo129435;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 912750 914295 . - . ID=Physo129436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70261;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 912750 914295 . - . ID=Physo129436;Parent=Physo129436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 912750 912903 . - 0 ID=Physo129436;Parent=Physo129436;rank=2 scaffold_7 . exon 912750 912903 . - . ID=Physo129436.2;Parent=Physo129436;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 913202 914295 . - 0 ID=Physo129436;Parent=Physo129436;rank=1 scaffold_7 . exon 913202 914295 . - . ID=Physo129436.1;Parent=Physo129436;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 ensembl protein_coding_gene 915823 919327 . + . ID=Physo129438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70263;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 915823 919327 . + . ID=Physo129438;Parent=Physo129438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 915823 915915 . + 0 ID=Physo129438;Parent=Physo129438;rank=1 scaffold_7 . exon 915823 915915 . + . ID=Physo129438.1;Parent=Physo129438;constitutive=1;rank=1 scaffold_7 . CDS 916032 916220 . + 0 ID=Physo129438;Parent=Physo129438;rank=2 scaffold_7 . exon 916032 916220 . + . ID=Physo129438.2;Parent=Physo129438;constitutive=1;rank=2 scaffold_7 . CDS 916302 918404 . + 0 ID=Physo129438;Parent=Physo129438;rank=3 scaffold_7 . exon 916302 918404 . + . ID=Physo129438.3;Parent=Physo129438;constitutive=1;rank=3 scaffold_7 . CDS 918494 919150 . + 0 ID=Physo129438;Parent=Physo129438;rank=4 scaffold_7 . exon 907659 907897 . - . ID=Physo155769.3;Parent=Physo155769;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . exon 907970 908222 . - . ID=Physo155769.2;Parent=Physo155769;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . exon 908307 908801 . - . ID=Physo155769.1;Parent=Physo155769;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 910042 911397 . + . ID=Physo155773;biotype=protein_coding;external_name=C_scaffold_7000102;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 910042 911397 . + . ID=Physo155773;Parent=Physo155773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 910042 910053 . + 0 ID=Physo155773;Parent=Physo155773;rank=1 scaffold_7 . exon 910042 910053 . + . ID=Physo155773.1;Parent=Physo155773;constitutive=1;rank=1 scaffold_7 . CDS 910131 910710 . + 0 ID=Physo155773;Parent=Physo155773;rank=2 scaffold_7 . exon 910131 910710 . + . ID=Physo155773.2;Parent=Physo155773;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 910753 910902 . + 0 ID=Physo155773;Parent=Physo155773;rank=3 scaffold_7 . exon 910753 910902 . + . ID=Physo155773.3;Parent=Physo155773;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 910970 911262 . + 0 ID=Physo155773;Parent=Physo155773;rank=4 scaffold_7 . exon 910970 911262 . + . ID=Physo155773.4;Parent=Physo155773;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 911326 911397 . + 0 ID=Physo155773;Parent=Physo155773;rank=5 scaffold_7 . exon 911326 911397 . + . ID=Physo155773.5;Parent=Physo155773;constitutive=1;rank=5 scaffold_7 ensembl protein_coding_gene 914939 915335 . + . ID=Physo155776;biotype=protein_coding;external_name=C_scaffold_7000105;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 914939 915335 . + . ID=Physo155776;Parent=Physo155776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 914939 915040 . + 0 ID=Physo155776;Parent=Physo155776;rank=1 scaffold_7 . exon 914939 915040 . + . ID=Physo155776.1;Parent=Physo155776;constitutive=1;rank=1 scaffold_7 . CDS 915132 915335 . + 0 ID=Physo155776;Parent=Physo155776;rank=2 scaffold_7 . exon 915132 915335 . + . ID=Physo155776.2;Parent=Physo155776;constitutive=1;rank=2 scaffold_7 . repeat_region 918133 918253 . ? . description=dust scaffold_7 . repeat_region 918134 918253 . + . description=(CAG)n scaffold_7 . biological_region 918909 918910 0.999 - . logic_name=eponine scaffold_7 . repeat_region 919004 919049 . ? . description=dust scaffold_7 . biological_region 920408 920415 0.999 + . logic_name=eponine scaffold_7 . biological_region 920461 920468 0.999 + . logic_name=eponine scaffold_7 . biological_region 920515 920519 0.999 - . logic_name=eponine scaffold_7 . biological_region 920588 920594 0.999 - . logic_name=eponine scaffold_7 . biological_region 920590 920598 0.999 + . logic_name=eponine scaffold_7 . biological_region 920606 920612 0.999 - . logic_name=eponine scaffold_7 . biological_region 920627 920628 0.999 - . logic_name=eponine scaffold_7 . biological_region 920702 920704 0.999 - . logic_name=eponine scaffold_7 . biological_region 920710 920713 0.999 + . logic_name=eponine scaffold_7 . biological_region 920820 920824 0.999 - . logic_name=eponine scaffold_7 . biological_region 921185 921187 0.999 + . logic_name=eponine scaffold_7 . biological_region 922836 922839 0.999 - . logic_name=eponine scaffold_7 . biological_region 923303 923304 0.999 - . logic_name=eponine scaffold_7 . biological_region 923357 923359 0.999 + . logic_name=eponine scaffold_7 . biological_region 925546 925546 0.999 + . logic_name=eponine scaffold_7 . biological_region 925597 925600 0.999 - . logic_name=eponine scaffold_7 . biological_region 925736 925740 0.999 - . logic_name=eponine scaffold_7 . biological_region 925794 925796 0.999 + . logic_name=eponine scaffold_7 . biological_region 925835 925842 0.999 - . logic_name=eponine scaffold_7 . biological_region 925894 925895 0.999 + . logic_name=eponine scaffold_7 . biological_region 926315 926318 0.999 + . logic_name=eponine scaffold_7 . biological_region 926841 926841 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 926195 927837 . + . ID=Physo108386;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70031;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 926195 927837 . + . ID=Physo108386;Parent=Physo108386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 926195 926386 . + . ID=Physo108386.1;Parent=Physo108386;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 . CDS 926217 926386 . + 0 ID=Physo108386;Parent=Physo108386;rank=1 scaffold_7 . CDS 926463 927837 . + 0 ID=Physo108386;Parent=Physo108386;rank=2 scaffold_7 . exon 926463 927837 . + . ID=Physo108386.2;Parent=Physo108386;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . exon 918494 919327 . + . ID=Physo129438.4;Parent=Physo129438;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_7 ensembl protein_coding_gene 920493 925007 . + . ID=Physo155779;biotype=protein_coding;external_name=C_scaffold_7000108;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 920493 925007 . + . ID=Physo155779;Parent=Physo155779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 920493 920567 . + 0 ID=Physo155779;Parent=Physo155779;rank=1 scaffold_7 . exon 920493 920567 . + . ID=Physo155779.1;Parent=Physo155779;constitutive=1;rank=1 scaffold_7 . CDS 920595 921133 . + 0 ID=Physo155779;Parent=Physo155779;rank=2 scaffold_7 . exon 920595 921133 . + . ID=Physo155779.2;Parent=Physo155779;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 921185 922563 . + 0 ID=Physo155779;Parent=Physo155779;rank=3 scaffold_7 . exon 921185 922563 . + . ID=Physo155779.3;Parent=Physo155779;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 922624 923051 . + 0 ID=Physo155779;Parent=Physo155779;rank=4 scaffold_7 . exon 922624 923051 . + . ID=Physo155779.4;Parent=Physo155779;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 923122 923349 . + 0 ID=Physo155779;Parent=Physo155779;rank=5 scaffold_7 . exon 923122 923349 . + . ID=Physo155779.5;Parent=Physo155779;constitutive=1;rank=5 scaffold_7 . CDS 923406 923658 . + 0 ID=Physo155779;Parent=Physo155779;rank=6 scaffold_7 . exon 923406 923658 . + . ID=Physo155779.6;Parent=Physo155779;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_7 . CDS 923842 924420 . + 0 ID=Physo155779;Parent=Physo155779;rank=7 scaffold_7 . exon 923842 924420 . + . ID=Physo155779.7;Parent=Physo155779;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_7 . CDS 924532 925007 . + 0 ID=Physo155779;Parent=Physo155779;rank=8 scaffold_7 . exon 924532 925007 . + . ID=Physo155779.8;Parent=Physo155779;constitutive=1;ensembl_phase=1;rank=8 scaffold_7 ensembl protein_coding_gene 925118 925981 . - . ID=Physo155781;biotype=protein_coding;external_name=C_scaffold_7000110;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 925118 925981 . - . ID=Physo155781;Parent=Physo155781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 925118 925846 . - 0 ID=Physo155781;Parent=Physo155781;rank=2 scaffold_7 . exon 925118 925846 . - . ID=Physo155781.2;Parent=Physo155781;constitutive=1;rank=2 scaffold_7 . CDS 925871 925981 . - 0 ID=Physo155781;Parent=Physo155781;rank=1 scaffold_7 . exon 925871 925981 . - . ID=Physo155781.1;Parent=Physo155781;constitutive=1;rank=1 scaffold_7 . repeat_region 929471 929501 . ? . description=trf scaffold_7 ensembl protein_coding_gene 929307 930464 . + . ID=Physo155783;biotype=protein_coding;external_name=C_scaffold_7000112;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 929307 930464 . + . ID=Physo155783;Parent=Physo155783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 929307 929764 . + 0 ID=Physo155783;Parent=Physo155783;rank=1 scaffold_7 . exon 929307 929764 . + . ID=Physo155783.1;Parent=Physo155783;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 929792 930464 . + 0 ID=Physo155783;Parent=Physo155783;rank=2 scaffold_7 . exon 929792 930464 . + . ID=Physo155783.2;Parent=Physo155783;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 ensembl protein_coding_gene 931064 933222 . + . ID=Physo155784;biotype=protein_coding;external_name=C_scaffold_7000113;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 931064 933222 . + . ID=Physo155784;Parent=Physo155784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 931064 931559 . + 0 ID=Physo155784;Parent=Physo155784;rank=1 scaffold_7 . exon 931064 931559 . + . ID=Physo155784.1;Parent=Physo155784;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 931682 931785 . + 0 ID=Physo155784;Parent=Physo155784;rank=2 scaffold_7 . exon 931682 931785 . + . ID=Physo155784.2;Parent=Physo155784;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 931974 932206 . + 0 ID=Physo155784;Parent=Physo155784;rank=3 scaffold_7 . exon 931974 932206 . + . ID=Physo155784.3;Parent=Physo155784;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_7 . CDS 932252 932640 . + 0 ID=Physo155784;Parent=Physo155784;rank=4 scaffold_7 . exon 932252 932640 . + . ID=Physo155784.4;Parent=Physo155784;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_7 . CDS 932689 932777 . + 0 ID=Physo155784;Parent=Physo155784;rank=5 scaffold_7 . exon 932689 932777 . + . ID=Physo155784.5;Parent=Physo155784;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 . CDS 932844 933005 . + 0 ID=Physo155784;Parent=Physo155784;rank=6 scaffold_7 . exon 932844 933005 . + . ID=Physo155784.6;Parent=Physo155784;constitutive=1;rank=6 scaffold_7 . CDS 933074 933153 . + 0 ID=Physo155784;Parent=Physo155784;rank=7 scaffold_7 . exon 933074 933153 . + . ID=Physo155784.7;Parent=Physo155784;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_7 . CDS 933207 933222 . + 0 ID=Physo155784;Parent=Physo155784;rank=8 scaffold_7 . exon 933207 933222 . + . ID=Physo155784.8;Parent=Physo155784;constitutive=1;ensembl_phase=2;rank=8 scaffold_7 ensembl protein_coding_gene 936869 937084 . - . ID=Physo155785;biotype=protein_coding;external_name=C_scaffold_7000114;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 936869 937084 . - . ID=Physo155785;Parent=Physo155785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 936869 937084 . - 0 ID=Physo155785;Parent=Physo155785;rank=1 scaffold_7 . exon 936869 937084 . - . ID=Physo155785.1;Parent=Physo155785;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 937271 942517 . + . ID=Physo155786;biotype=protein_coding;external_name=C_scaffold_7000115;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 937271 942517 . + . ID=Physo155786;Parent=Physo155786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 937271 937685 . + 0 ID=Physo155786;Parent=Physo155786;rank=1 scaffold_7 . exon 937271 937685 . + . ID=Physo155786.1;Parent=Physo155786;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 938392 938579 . + 0 ID=Physo155786;Parent=Physo155786;rank=2 scaffold_7 . CDS 938649 938936 . + 0 ID=Physo155786;Parent=Physo155786;rank=3 scaffold_7 . CDS 939180 939899 . + 0 ID=Physo155786;Parent=Physo155786;rank=4 scaffold_7 . CDS 939979 940011 . + 0 ID=Physo155786;Parent=Physo155786;rank=5 scaffold_7 . CDS 940085 940240 . + 0 ID=Physo155786;Parent=Physo155786;rank=6 scaffold_7 . CDS 940328 940480 . + 0 ID=Physo155786;Parent=Physo155786;rank=7 scaffold_7 . CDS 940563 940601 . + 0 ID=Physo155786;Parent=Physo155786;rank=8 scaffold_7 . CDS 940719 940991 . + 0 ID=Physo155786;Parent=Physo155786;rank=9 scaffold_7 . CDS 941354 941497 . + 0 ID=Physo155786;Parent=Physo155786;rank=10 scaffold_7 . CDS 941705 942517 . + 0 ID=Physo155786;Parent=Physo155786;rank=11 scaffold_7 . biological_region 938964 938968 0.999 - . logic_name=eponine scaffold_7 . repeat_region 942808 942853 . ? . description=dust scaffold_7 . repeat_region 942999 943036 . ? . description=dust scaffold_7 ensembl protein_coding_gene 944068 945975 . + . ID=Physo129449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70274;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 944068 945975 . + . ID=Physo129449;Parent=Physo129449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 944068 944196 . + . ID=Physo129449.1;Parent=Physo129449;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 944091 944196 . + 0 ID=Physo129449;Parent=Physo129449;rank=1 scaffold_7 . CDS 944275 944333 . + 0 ID=Physo129449;Parent=Physo129449;rank=2 scaffold_7 . exon 944275 944333 . + . ID=Physo129449.2;Parent=Physo129449;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 944410 944524 . + 0 ID=Physo129449;Parent=Physo129449;rank=3 scaffold_7 . exon 944410 944524 . + . ID=Physo129449.3;Parent=Physo129449;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 944597 944691 . + 0 ID=Physo129449;Parent=Physo129449;rank=4 scaffold_7 . exon 944597 944691 . + . ID=Physo129449.4;Parent=Physo129449;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 944770 944861 . + 0 ID=Physo129449;Parent=Physo129449;rank=5 scaffold_7 . exon 944770 944861 . + . ID=Physo129449.5;Parent=Physo129449;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_7 . CDS 944931 945474 . + 0 ID=Physo129449;Parent=Physo129449;rank=6 scaffold_7 . exon 944931 945474 . + . ID=Physo129449.6;Parent=Physo129449;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 . CDS 945553 945624 . + 0 ID=Physo129449;Parent=Physo129449;rank=7 scaffold_7 . exon 945553 945624 . + . ID=Physo129449.7;Parent=Physo129449;constitutive=1;rank=7 scaffold_7 . CDS 945699 945863 . + 0 ID=Physo129449;Parent=Physo129449;rank=8 scaffold_7 . exon 945699 945975 . + . ID=Physo129449.8;Parent=Physo129449;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_7 ensembl protein_coding_gene 946051 948828 . - . ID=Physo129450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70275;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 946051 948828 . - . ID=Physo129450;Parent=Physo129450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 946051 948828 . - 0 ID=Physo129450;Parent=Physo129450;rank=1 scaffold_7 . exon 946051 948828 . - . ID=Physo129450.1;Parent=Physo129450;constitutive=1;rank=1 scaffold_7 . exon 938392 938579 . + . ID=Physo155786.2;Parent=Physo155786;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . exon 938649 938936 . + . ID=Physo155786.3;Parent=Physo155786;constitutive=1;rank=3 scaffold_7 . exon 939180 939899 . + . ID=Physo155786.4;Parent=Physo155786;constitutive=1;rank=4 scaffold_7 . exon 939979 940011 . + . ID=Physo155786.5;Parent=Physo155786;constitutive=1;rank=5 scaffold_7 . exon 940085 940240 . + . ID=Physo155786.6;Parent=Physo155786;constitutive=1;rank=6 scaffold_7 . exon 940328 940480 . + . ID=Physo155786.7;Parent=Physo155786;constitutive=1;rank=7 scaffold_7 . exon 940563 940601 . + . ID=Physo155786.8;Parent=Physo155786;constitutive=1;rank=8 scaffold_7 . exon 940719 940991 . + . ID=Physo155786.9;Parent=Physo155786;constitutive=1;rank=9 scaffold_7 . exon 941354 941497 . + . ID=Physo155786.10;Parent=Physo155786;constitutive=1;rank=10 scaffold_7 . exon 941705 942517 . + . ID=Physo155786.11;Parent=Physo155786;constitutive=1;rank=11 scaffold_7 ensembl protein_coding_gene 942623 942977 . - . ID=Physo155787;biotype=protein_coding;external_name=C_scaffold_7000116;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 942623 942977 . - . ID=Physo155787;Parent=Physo155787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 942623 942734 . - 0 ID=Physo155787;Parent=Physo155787;rank=2 scaffold_7 . exon 942623 942734 . - . ID=Physo155787.2;Parent=Physo155787;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 942762 942976 . - 0 ID=Physo155787;Parent=Physo155787;rank=1 scaffold_7 . exon 942762 942977 . - . ID=Physo155787.1;Parent=Physo155787;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 . repeat_region 953423 953447 . ? . description=trf scaffold_7 . repeat_region 953829 953986 . ? . description=trf scaffold_7 ensembl protein_coding_gene 952528 953603 . - . ID=Physo129452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70277;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 952528 953603 . - . ID=Physo129452;Parent=Physo129452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 952528 953358 . - 0 ID=Physo129452;Parent=Physo129452;rank=2 scaffold_7 . exon 952528 953358 . - . ID=Physo129452.2;Parent=Physo129452;constitutive=1;rank=2 scaffold_7 . CDS 953415 953603 . - 0 ID=Physo129452;Parent=Physo129452;rank=1 scaffold_7 . exon 953415 953603 . - . ID=Physo129452.1;Parent=Physo129452;constitutive=1;rank=1 scaffold_7 . repeat_region 957694 957804 . ? . description=dust scaffold_7 . repeat_region 958799 958970 . ? . description=dust scaffold_7 . repeat_region 960428 960709 . ? . description=dust scaffold_7 . biological_region 961793 961794 0.999 - . logic_name=eponine scaffold_7 . biological_region 961847 961851 0.999 + . logic_name=eponine scaffold_7 . biological_region 964408 964409 0.999 - . logic_name=eponine scaffold_7 . biological_region 964462 964466 0.999 + . logic_name=eponine scaffold_7 . repeat_region 965093 967284 . ? . description=dust scaffold_7 ensembl protein_coding_gene 958604 959966 . - . ID=Physo129453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70278;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 958604 959966 . - . ID=Physo129453;Parent=Physo129453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 958604 958618 . - 0 ID=Physo129453;Parent=Physo129453;rank=2 scaffold_7 . exon 958604 958618 . - . ID=Physo129453.2;Parent=Physo129453;constitutive=1;rank=2 scaffold_7 . CDS 958998 959966 . - 0 ID=Physo129453;Parent=Physo129453;rank=1 scaffold_7 . exon 958998 959966 . - . ID=Physo129453.1;Parent=Physo129453;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 960912 962000 . - . ID=Physo129454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70279;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 960912 962000 . - . ID=Physo129454;Parent=Physo129454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 960912 962000 . - 0 ID=Physo129454;Parent=Physo129454;rank=1 scaffold_7 . exon 960912 962000 . - . ID=Physo129454.1;Parent=Physo129454;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 963389 964615 . - . ID=Physo129455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70280;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 963389 964615 . - . ID=Physo129455;Parent=Physo129455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 963389 964615 . - . ID=Physo129455.1;Parent=Physo129455;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 963455 964228 . - 0 ID=Physo129455;Parent=Physo129455;rank=1 scaffold_7 ensembl protein_coding_gene 964918 969298 . - . ID=Physo129456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70281;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 964918 969298 . - . ID=Physo129456;Parent=Physo129456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 964918 964935 . - 0 ID=Physo129456;Parent=Physo129456;rank=2 scaffold_7 . exon 964918 964935 . - . ID=Physo129456.2;Parent=Physo129456;constitutive=1;rank=2 scaffold_7 . CDS 967304 969298 . - 0 ID=Physo129456;Parent=Physo129456;rank=1 scaffold_7 . repeat_region 967285 968557 . ? . description=trf scaffold_7 . repeat_region 969150 969202 . ? . description=trf scaffold_7 . repeat_region 976617 976667 . ? . description=trf scaffold_7 . repeat_region 977062 977106 . ? . description=trf scaffold_7 . exon 967304 969298 . - . ID=Physo129456.1;Parent=Physo129456;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 969946 970824 . + . ID=Physo129457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70282;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 969946 970824 . + . ID=Physo129457;Parent=Physo129457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 969946 970824 . + 0 ID=Physo129457;Parent=Physo129457;rank=1 scaffold_7 . exon 969946 970824 . + . ID=Physo129457.1;Parent=Physo129457;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 971406 972448 . - . ID=Physo129458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70283;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 971406 972448 . - . ID=Physo129458;Parent=Physo129458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 971406 972344 . - 0 ID=Physo129458;Parent=Physo129458;rank=2 scaffold_7 . exon 971406 972344 . - . ID=Physo129458.2;Parent=Physo129458;constitutive=1;rank=2 scaffold_7 . CDS 972418 972426 . - 0 ID=Physo129458;Parent=Physo129458;rank=1 scaffold_7 . exon 972418 972448 . - . ID=Physo129458.1;Parent=Physo129458;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 974175 975059 . + . ID=Physo129459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70284;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 974175 975059 . + . ID=Physo129459;Parent=Physo129459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 974175 975059 . + 0 ID=Physo129459;Parent=Physo129459;rank=1 scaffold_7 . exon 974175 975059 . + . ID=Physo129459.1;Parent=Physo129459;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 976555 978720 . + . ID=Physo129460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70285;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 976555 978720 . + . ID=Physo129460;Parent=Physo129460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 976555 976705 . + 0 ID=Physo129460;Parent=Physo129460;rank=1 scaffold_7 . exon 976555 976705 . + . ID=Physo129460.1;Parent=Physo129460;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 976776 976868 . + 0 ID=Physo129460;Parent=Physo129460;rank=2 scaffold_7 . exon 976776 976868 . + . ID=Physo129460.2;Parent=Physo129460;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 976961 977596 . + 0 ID=Physo129460;Parent=Physo129460;rank=3 scaffold_7 . exon 976961 977596 . + . ID=Physo129460.3;Parent=Physo129460;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 977648 977716 . + 0 ID=Physo129460;Parent=Physo129460;rank=4 scaffold_7 . CDS 977810 978137 . + 0 ID=Physo129460;Parent=Physo129460;rank=5 scaffold_7 . CDS 978594 978720 . + 0 ID=Physo129460;Parent=Physo129460;rank=6 scaffold_7 . biological_region 977323 977325 0.999 + . logic_name=eponine scaffold_7 . exon 977648 977716 . + . ID=Physo129460.4;Parent=Physo129460;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_7 . exon 977810 978137 . + . ID=Physo129460.5;Parent=Physo129460;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_7 . exon 978594 978720 . + . ID=Physo129460.6;Parent=Physo129460;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 ensembl protein_coding_gene 983191 983676 . - . ID=Physo129461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70286;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 983191 983676 . - . ID=Physo129461;Parent=Physo129461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 983191 983676 . - 0 ID=Physo129461;Parent=Physo129461;rank=1 scaffold_7 . exon 983191 983676 . - . ID=Physo129461.1;Parent=Physo129461;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 984700 985134 . + . ID=Physo129462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70287;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 984700 985134 . + . ID=Physo129462;Parent=Physo129462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 984700 985134 . + 0 ID=Physo129462;Parent=Physo129462;rank=1 scaffold_7 . exon 984700 985134 . + . ID=Physo129462.1;Parent=Physo129462;constitutive=1;rank=1 scaffold_7 . repeat_region 987310 987317 . ? . description=dust scaffold_7 . repeat_region 987819 987828 . ? . description=dust scaffold_7 . repeat_region 987830 987879 . ? . description=dust scaffold_7 . repeat_region 987910 987933 . ? . description=dust scaffold_7 . repeat_region 988392 988399 . ? . description=dust scaffold_7 . repeat_region 990658 990665 . ? . description=dust scaffold_7 . repeat_region 990672 990679 . ? . description=dust scaffold_7 . repeat_region 991872 991928 . ? . description=trf scaffold_7 . repeat_region 994954 994961 . ? . description=dust scaffold_7 . repeat_region 995165 995205 . ? . description=trf scaffold_7 . repeat_region 995165 995224 . ? . description=dust scaffold_7 . repeat_region 995204 995224 . ? . description=trf scaffold_7 . repeat_region 996153 996207 . ? . description=trf scaffold_7 . biological_region 1005702 1005703 0.999 - . logic_name=eponine scaffold_7 ensembl protein_coding_gene 998729 999838 . + . ID=Physo129464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70289;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 998729 999838 . + . ID=Physo129464;Parent=Physo129464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 998729 999526 . + . ID=Physo129464.1;Parent=Physo129464;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 998731 999526 . + 0 ID=Physo129464;Parent=Physo129464;rank=1 scaffold_7 . CDS 999603 999681 . + 0 ID=Physo129464;Parent=Physo129464;rank=2 scaffold_7 . exon 999603 999681 . + . ID=Physo129464.2;Parent=Physo129464;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 999745 999838 . + 0 ID=Physo129464;Parent=Physo129464;rank=3 scaffold_7 . exon 999745 999838 . + . ID=Physo129464.3;Parent=Physo129464;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 ensembl protein_coding_gene 1005615 1008127 . + . ID=Physo129465;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70290;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1005615 1008127 . + . ID=Physo129465;Parent=Physo129465;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1005615 1005683 . + 0 ID=Physo129465;Parent=Physo129465;rank=1 scaffold_7 . exon 1005615 1005683 . + . ID=Physo129465.1;Parent=Physo129465;constitutive=1;rank=1 scaffold_7 . CDS 1005758 1007021 . + 0 ID=Physo129465;Parent=Physo129465;rank=2 scaffold_7 . exon 1005758 1007021 . + . ID=Physo129465.2;Parent=Physo129465;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . CDS 1007111 1007257 . + 0 ID=Physo129465;Parent=Physo129465;rank=3 scaffold_7 . exon 1007111 1007257 . + . ID=Physo129465.3;Parent=Physo129465;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 1007371 1007511 . + 0 ID=Physo129465;Parent=Physo129465;rank=4 scaffold_7 . CDS 1007579 1007708 . + 0 ID=Physo129465;Parent=Physo129465;rank=5 scaffold_7 . CDS 1007776 1008127 . + 0 ID=Physo129465;Parent=Physo129465;rank=6 scaffold_7 ensembl protein_coding_gene 997752 998329 . + . ID=Physo155788;biotype=protein_coding;external_name=C_scaffold_7000117;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 997752 998329 . + . ID=Physo155788;Parent=Physo155788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 997752 997952 . + 0 ID=Physo155788;Parent=Physo155788;rank=1 scaffold_7 . exon 997752 997952 . + . ID=Physo155788.1;Parent=Physo155788;constitutive=1;rank=1 scaffold_7 . CDS 998034 998134 . + 0 ID=Physo155788;Parent=Physo155788;rank=2 scaffold_7 . exon 998034 998134 . + . ID=Physo155788.2;Parent=Physo155788;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 998254 998329 . + 0 ID=Physo155788;Parent=Physo155788;rank=3 scaffold_7 . exon 998254 998329 . + . ID=Physo155788.3;Parent=Physo155788;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . repeat_region 1007955 1008003 . ? . description=dust scaffold_7 . repeat_region 1015174 1015203 . ? . description=trf scaffold_7 . exon 1007371 1007511 . + . ID=Physo129465.4;Parent=Physo129465;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_7 . exon 1007579 1007708 . + . ID=Physo129465.5;Parent=Physo129465;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_7 . exon 1007776 1008127 . + . ID=Physo129465.6;Parent=Physo129465;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 ensembl protein_coding_gene 1012230 1013286 . - . ID=Physo129466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70291;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1012230 1013286 . - . ID=Physo129466;Parent=Physo129466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1012230 1012294 . - 0 ID=Physo129466;Parent=Physo129466;rank=4 scaffold_7 . exon 1012230 1012294 . - . ID=Physo129466.4;Parent=Physo129466;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 1012349 1012664 . - 0 ID=Physo129466;Parent=Physo129466;rank=3 scaffold_7 . exon 1012349 1012664 . - . ID=Physo129466.3;Parent=Physo129466;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 1012750 1012905 . - 0 ID=Physo129466;Parent=Physo129466;rank=2 scaffold_7 . exon 1012750 1012905 . - . ID=Physo129466.2;Parent=Physo129466;constitutive=1;rank=2 scaffold_7 . CDS 1012990 1013286 . - 0 ID=Physo129466;Parent=Physo129466;rank=1 scaffold_7 . exon 1012990 1013286 . - . ID=Physo129466.1;Parent=Physo129466;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 1013556 1017543 . + . ID=Physo129467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70292;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1013556 1017543 . + . ID=Physo129467;Parent=Physo129467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1013556 1016534 . + 0 ID=Physo129467;Parent=Physo129467;rank=1 scaffold_7 . exon 1013556 1016534 . + . ID=Physo129467.1;Parent=Physo129467;constitutive=1;rank=1 scaffold_7 . CDS 1016597 1016674 . + 0 ID=Physo129467;Parent=Physo129467;rank=2 scaffold_7 . exon 1016597 1016674 . + . ID=Physo129467.2;Parent=Physo129467;constitutive=1;rank=2 scaffold_7 . CDS 1016755 1017156 . + 0 ID=Physo129467;Parent=Physo129467;rank=3 scaffold_7 . exon 1016755 1017156 . + . ID=Physo129467.3;Parent=Physo129467;constitutive=1;rank=3 scaffold_7 . CDS 1017319 1017543 . + 0 ID=Physo129467;Parent=Physo129467;rank=4 scaffold_7 . biological_region 1017934 1017934 0.999 + . logic_name=eponine scaffold_7 . biological_region 1018935 1018938 0.999 + . logic_name=eponine scaffold_7 . biological_region 1021631 1021632 0.999 - . logic_name=eponine scaffold_7 . biological_region 1022411 1022415 0.999 - . logic_name=eponine scaffold_7 . biological_region 1022712 1022716 0.999 + . logic_name=eponine scaffold_7 . biological_region 1022814 1022821 0.999 + . logic_name=eponine scaffold_7 . exon 1017319 1017543 . + . ID=Physo129467.4;Parent=Physo129467;constitutive=1;rank=4 scaffold_7 ensembl protein_coding_gene 1022539 1024965 . + . ID=Physo129468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70293;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1022539 1024965 . + . ID=Physo129468;Parent=Physo129468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1022539 1024965 . + 0 ID=Physo129468;Parent=Physo129468;rank=1 scaffold_7 . exon 1022539 1024965 . + . ID=Physo129468.1;Parent=Physo129468;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 1025056 1026872 . + . ID=Physo155791;biotype=protein_coding;external_name=C_scaffold_7000120;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1025056 1026872 . + . ID=Physo155791;Parent=Physo155791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1025056 1025172 . + 0 ID=Physo155791;Parent=Physo155791;rank=1 scaffold_7 . exon 1025056 1025172 . + . ID=Physo155791.1;Parent=Physo155791;constitutive=1;rank=1 scaffold_7 . CDS 1025246 1025677 . + 0 ID=Physo155791;Parent=Physo155791;rank=2 scaffold_7 . exon 1025246 1025677 . + . ID=Physo155791.2;Parent=Physo155791;constitutive=1;rank=2 scaffold_7 . CDS 1025789 1025894 . + 0 ID=Physo155791;Parent=Physo155791;rank=3 scaffold_7 . exon 1025789 1025894 . + . ID=Physo155791.3;Parent=Physo155791;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_7 . CDS 1025943 1026371 . + 0 ID=Physo155791;Parent=Physo155791;rank=4 scaffold_7 . exon 1025943 1026371 . + . ID=Physo155791.4;Parent=Physo155791;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_7 . CDS 1026477 1026872 . + 0 ID=Physo155791;Parent=Physo155791;rank=5 scaffold_7 . exon 1026477 1026872 . + . ID=Physo155791.5;Parent=Physo155791;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_7 . repeat_region 1029533 1029612 . ? . description=trf scaffold_7 ensembl protein_coding_gene 1030085 1032116 . + . ID=Physo108387;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70032;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1030085 1032116 . + . ID=Physo108387;Parent=Physo108387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1030085 1031848 . + 0 ID=Physo108387;Parent=Physo108387;rank=1 scaffold_7 . exon 1030085 1032116 . + . ID=Physo108387.1;Parent=Physo108387;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 1035348 1036478 . - . ID=Physo108388;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70033;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1035348 1036478 . - . ID=Physo108388;Parent=Physo108388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 1035348 1035989 . - . ID=Physo108388.4;Parent=Physo108388;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_7 . CDS 1035443 1035989 . - 0 ID=Physo108388;Parent=Physo108388;rank=4 scaffold_7 . CDS 1036112 1036203 . - 0 ID=Physo108388;Parent=Physo108388;rank=3 scaffold_7 . exon 1036112 1036203 . - . ID=Physo108388.3;Parent=Physo108388;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_7 . CDS 1036285 1036366 . - 0 ID=Physo108388;Parent=Physo108388;rank=2 scaffold_7 . exon 1036285 1036366 . - . ID=Physo108388.2;Parent=Physo108388;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 1036445 1036458 . - 0 ID=Physo108388;Parent=Physo108388;rank=1 scaffold_7 . exon 1036445 1036478 . - . ID=Physo108388.1;Parent=Physo108388;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 1034176 1034931 . + . ID=Physo111950;biotype=protein_coding;external_name=estExt_Genewise1.C_70192;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1034176 1034931 . + . ID=Physo111950;Parent=Physo111950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 1034176 1034931 . + . ID=Physo111950.1;Parent=Physo111950;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 1034245 1034871 . + 0 ID=Physo111950;Parent=Physo111950;rank=1 scaffold_7 ensembl protein_coding_gene 1029064 1029871 . - . ID=Physo129469;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70294;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1029064 1029871 . - . ID=Physo129469;Parent=Physo129469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1029064 1029744 . - 0 ID=Physo129469;Parent=Physo129469;rank=2 scaffold_7 . exon 1029064 1029744 . - . ID=Physo129469.2;Parent=Physo129469;constitutive=1;rank=2 scaffold_7 . CDS 1029812 1029871 . - 0 ID=Physo129469;Parent=Physo129469;rank=1 scaffold_7 . exon 1029812 1029871 . - . ID=Physo129469.1;Parent=Physo129469;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 1032243 1034168 . + . ID=Physo129471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70296;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1032243 1034168 . + . ID=Physo129471;Parent=Physo129471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1032243 1033529 . + 0 ID=Physo129471;Parent=Physo129471;rank=1 scaffold_7 . exon 1032243 1034168 . + . ID=Physo129471.1;Parent=Physo129471;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 . repeat_region 1038381 1038394 . ? . description=dust scaffold_7 . repeat_region 1039305 1039420 . ? . description=dust scaffold_7 . repeat_region 1040765 1040772 . ? . description=dust scaffold_7 . repeat_region 1042361 1042374 . ? . description=dust scaffold_7 . biological_region 1042781 1042781 0.999 - . logic_name=eponine scaffold_7 . biological_region 1043470 1043474 0.999 + . logic_name=eponine scaffold_7 . biological_region 1043645 1043645 0.999 - . logic_name=eponine scaffold_7 . biological_region 1043698 1043702 0.999 + . logic_name=eponine scaffold_7 . biological_region 1043792 1043792 0.999 - . logic_name=eponine scaffold_7 . biological_region 1044282 1044287 0.999 - . logic_name=eponine scaffold_7 . biological_region 1044466 1044470 0.999 + . logic_name=eponine scaffold_7 . biological_region 1044562 1044566 0.999 + . logic_name=eponine scaffold_7 . repeat_region 1046829 1046839 . ? . description=dust scaffold_7 ensembl protein_coding_gene 1041332 1042494 . + . ID=Physo129474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70299;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1041332 1042494 . + . ID=Physo129474;Parent=Physo129474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1041332 1042300 . + 0 ID=Physo129474;Parent=Physo129474;rank=1 scaffold_7 . exon 1041332 1042494 . + . ID=Physo129474.1;Parent=Physo129474;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 1042529 1043713 . - . ID=Physo129475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70300;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1042529 1043713 . - . ID=Physo129475;Parent=Physo129475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1042529 1043713 . - 0 ID=Physo129475;Parent=Physo129475;rank=1 scaffold_7 . exon 1042529 1043713 . - . ID=Physo129475.1;Parent=Physo129475;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 1044595 1045255 . + . ID=Physo129476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70301;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1044595 1045255 . + . ID=Physo129476;Parent=Physo129476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1044595 1044796 . + 0 ID=Physo129476;Parent=Physo129476;rank=1 scaffold_7 . exon 1044595 1044796 . + . ID=Physo129476.1;Parent=Physo129476;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 1044820 1044959 . + 0 ID=Physo129476;Parent=Physo129476;rank=2 scaffold_7 . exon 1044820 1044959 . + . ID=Physo129476.2;Parent=Physo129476;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 1045052 1045255 . + 0 ID=Physo129476;Parent=Physo129476;rank=3 scaffold_7 . exon 1045052 1045255 . + . ID=Physo129476.3;Parent=Physo129476;constitutive=1;rank=3 scaffold_7 ensembl protein_coding_gene 1046128 1046646 . - . ID=Physo129477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70302;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1046128 1046646 . - . ID=Physo129477;Parent=Physo129477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1046128 1046646 . - 0 ID=Physo129477;Parent=Physo129477;rank=1 scaffold_7 . exon 1046128 1046646 . - . ID=Physo129477.1;Parent=Physo129477;constitutive=1;rank=1 scaffold_7 ensembl protein_coding_gene 1048031 1061478 . + . ID=Physo129478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70303;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1048031 1061478 . + . ID=Physo129478;Parent=Physo129478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 1048031 1049181 . + . ID=Physo129478.1;Parent=Physo129478;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 1048111 1049181 . + 0 ID=Physo129478;Parent=Physo129478;rank=1 scaffold_7 . CDS 1049247 1049947 . + 0 ID=Physo129478;Parent=Physo129478;rank=2 scaffold_7 . exon 1049247 1049947 . + . ID=Physo129478.2;Parent=Physo129478;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . CDS 1050019 1050208 . + 0 ID=Physo129478;Parent=Physo129478;rank=3 scaffold_7 . exon 1050019 1050208 . + . ID=Physo129478.3;Parent=Physo129478;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 1050459 1052078 . + 0 ID=Physo129478;Parent=Physo129478;rank=4 scaffold_7 . exon 1050459 1052078 . + . ID=Physo129478.4;Parent=Physo129478;constitutive=1;rank=4 scaffold_7 . CDS 1052214 1052417 . + 0 ID=Physo129478;Parent=Physo129478;rank=5 scaffold_7 . exon 1052214 1052417 . + . ID=Physo129478.5;Parent=Physo129478;constitutive=1;rank=5 scaffold_7 . CDS 1052557 1061373 . + 0 ID=Physo129478;Parent=Physo129478;rank=6 scaffold_7 . exon 1052557 1061478 . + . ID=Physo129478.6;Parent=Physo129478;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_7 . biological_region 1057360 1057361 0.999 - . logic_name=eponine scaffold_7 . repeat_region 1061990 1062009 . ? . description=dust scaffold_7 . repeat_region 1061990 1062009 . ? . description=trf scaffold_7 . biological_region 1064355 1064358 0.999 + . logic_name=eponine scaffold_7 ensembl protein_coding_gene 1065138 1071945 . - . ID=Physo129480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70305;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1065138 1071945 . - . ID=Physo129480;Parent=Physo129480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1065138 1066217 . - 0 ID=Physo129480;Parent=Physo129480;rank=15 scaffold_7 . exon 1065138 1066217 . - . ID=Physo129480.15;Parent=Physo129480;constitutive=1;rank=15 scaffold_7 . CDS 1066535 1066938 . - 0 ID=Physo129480;Parent=Physo129480;rank=14 scaffold_7 . exon 1066535 1066938 . - . ID=Physo129480.14;Parent=Physo129480;constitutive=1;ensembl_phase=1;rank=14 scaffold_7 . CDS 1067399 1067513 . - 0 ID=Physo129480;Parent=Physo129480;rank=13 scaffold_7 . CDS 1067590 1068139 . - 0 ID=Physo129480;Parent=Physo129480;rank=12 scaffold_7 . CDS 1068287 1068519 . - 0 ID=Physo129480;Parent=Physo129480;rank=11 scaffold_7 . CDS 1068595 1068666 . - 0 ID=Physo129480;Parent=Physo129480;rank=10 scaffold_7 . CDS 1068731 1068852 . - 0 ID=Physo129480;Parent=Physo129480;rank=9 scaffold_7 . CDS 1068921 1069001 . - 0 ID=Physo129480;Parent=Physo129480;rank=8 scaffold_7 . CDS 1069070 1069886 . - 0 ID=Physo129480;Parent=Physo129480;rank=7 scaffold_7 . CDS 1069960 1070062 . - 0 ID=Physo129480;Parent=Physo129480;rank=6 scaffold_7 . CDS 1070136 1070245 . - 0 ID=Physo129480;Parent=Physo129480;rank=5 scaffold_7 . CDS 1070497 1070604 . - 0 ID=Physo129480;Parent=Physo129480;rank=4 scaffold_7 . CDS 1070653 1070717 . - 0 ID=Physo129480;Parent=Physo129480;rank=3 scaffold_7 . CDS 1070892 1071156 . - 0 ID=Physo129480;Parent=Physo129480;rank=2 scaffold_7 . CDS 1071277 1071945 . - 0 ID=Physo129480;Parent=Physo129480;rank=1 scaffold_7 ensembl protein_coding_gene 1061584 1064973 . + . ID=Physo155793;biotype=protein_coding;external_name=C_scaffold_7000122;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1061584 1064973 . + . ID=Physo155793;Parent=Physo155793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1061584 1061630 . + 0 ID=Physo155793;Parent=Physo155793;rank=1 scaffold_7 . exon 1061584 1061630 . + . ID=Physo155793.1;Parent=Physo155793;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_7 . CDS 1061713 1061923 . + 0 ID=Physo155793;Parent=Physo155793;rank=2 scaffold_7 . exon 1061713 1061923 . + . ID=Physo155793.2;Parent=Physo155793;constitutive=1;ensembl_phase=2;rank=2 scaffold_7 . CDS 1062019 1062183 . + 0 ID=Physo155793;Parent=Physo155793;rank=3 scaffold_7 . exon 1062019 1062183 . + . ID=Physo155793.3;Parent=Physo155793;constitutive=1;rank=3 scaffold_7 . CDS 1062266 1062328 . + 0 ID=Physo155793;Parent=Physo155793;rank=4 scaffold_7 . exon 1062266 1062328 . + . ID=Physo155793.4;Parent=Physo155793;constitutive=1;rank=4 scaffold_7 . CDS 1062397 1062466 . + 0 ID=Physo155793;Parent=Physo155793;rank=5 scaffold_7 . exon 1062397 1062466 . + . ID=Physo155793.5;Parent=Physo155793;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_7 . CDS 1062551 1062594 . + 0 ID=Physo155793;Parent=Physo155793;rank=6 scaffold_7 . exon 1062551 1062594 . + . ID=Physo155793.6;Parent=Physo155793;constitutive=1;ensembl_phase=1;rank=6 scaffold_7 . CDS 1062679 1062750 . + 0 ID=Physo155793;Parent=Physo155793;rank=7 scaffold_7 . exon 1062679 1062750 . + . ID=Physo155793.7;Parent=Physo155793;constitutive=1;rank=7 scaffold_7 . CDS 1062822 1062914 . + 0 ID=Physo155793;Parent=Physo155793;rank=8 scaffold_7 . exon 1062822 1062914 . + . ID=Physo155793.8;Parent=Physo155793;constitutive=1;rank=8 scaffold_7 . CDS 1062988 1063163 . + 0 ID=Physo155793;Parent=Physo155793;rank=9 scaffold_7 . exon 1062988 1063163 . + . ID=Physo155793.9;Parent=Physo155793;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_7 . CDS 1063230 1063321 . + 0 ID=Physo155793;Parent=Physo155793;rank=10 scaffold_7 . exon 1063230 1063321 . + . ID=Physo155793.10;Parent=Physo155793;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_7 . CDS 1063570 1063624 . + 0 ID=Physo155793;Parent=Physo155793;rank=11 scaffold_7 . exon 1063570 1063624 . + . ID=Physo155793.11;Parent=Physo155793;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_7 . CDS 1063694 1063871 . + 0 ID=Physo155793;Parent=Physo155793;rank=12 scaffold_7 . exon 1063694 1063871 . + . ID=Physo155793.12;Parent=Physo155793;constitutive=1;ensembl_phase=2;rank=12 scaffold_7 . CDS 1063954 1064625 . + 0 ID=Physo155793;Parent=Physo155793;rank=13 scaffold_7 . exon 1063954 1064625 . + . ID=Physo155793.13;Parent=Physo155793;constitutive=1;rank=13 scaffold_7 . CDS 1064692 1064973 . + 0 ID=Physo155793;Parent=Physo155793;rank=14 scaffold_7 . exon 1064692 1064973 . + . ID=Physo155793.14;Parent=Physo155793;constitutive=1;rank=14 scaffold_7 . exon 1067399 1067513 . - . ID=Physo129480.13;Parent=Physo129480;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_7 . exon 1067590 1068139 . - . ID=Physo129480.12;Parent=Physo129480;constitutive=1;ensembl_phase=2;rank=12 scaffold_7 . exon 1068287 1068519 . - . ID=Physo129480.11;Parent=Physo129480;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_7 . exon 1068595 1068666 . - . ID=Physo129480.10;Parent=Physo129480;constitutive=1;rank=10 scaffold_7 . exon 1068731 1068852 . - . ID=Physo129480.9;Parent=Physo129480;constitutive=1;ensembl_phase=1;rank=9 scaffold_7 . exon 1068921 1069001 . - . ID=Physo129480.8;Parent=Physo129480;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_7 . exon 1069070 1069886 . - . ID=Physo129480.7;Parent=Physo129480;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_7 . exon 1069960 1070062 . - . ID=Physo129480.6;Parent=Physo129480;constitutive=1;ensembl_phase=2;rank=6 scaffold_7 . exon 1070136 1070245 . - . ID=Physo129480.5;Parent=Physo129480;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_7 . exon 1070497 1070604 . - . ID=Physo129480.4;Parent=Physo129480;constitutive=1;rank=4 scaffold_7 . exon 1070653 1070717 . - . ID=Physo129480.3;Parent=Physo129480;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . exon 1070892 1071156 . - . ID=Physo129480.2;Parent=Physo129480;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_7 . exon 1071277 1071945 . - . ID=Physo129480.1;Parent=Physo129480;constitutive=1;rank=1 scaffold_7 . repeat_region 1077172 1077187 . ? . description=dust scaffold_7 . repeat_region 1077327 1077334 . ? . description=dust scaffold_7 . repeat_region 1077502 1077509 . ? . description=dust scaffold_7 . repeat_region 1077546 1077554 . ? . description=dust scaffold_7 . repeat_region 1084877 1084886 . ? . description=dust scaffold_7 . repeat_region 1085848 1085856 . ? . description=dust scaffold_7 . repeat_region 1086233 1086240 . ? . description=dust scaffold_7 ensembl protein_coding_gene 1082524 1084879 . - . ID=Physo108389;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70034;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1082524 1084879 . - . ID=Physo108389;Parent=Physo108389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . exon 1082524 1084879 . - . ID=Physo108389.1;Parent=Physo108389;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_7 . CDS 1082610 1084835 . - 0 ID=Physo108389;Parent=Physo108389;rank=1 scaffold_7 ensembl protein_coding_gene 1081080 1082468 . + . ID=Physo129481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70306;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1081080 1082468 . + . ID=Physo129481;Parent=Physo129481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1081080 1081949 . + 0 ID=Physo129481;Parent=Physo129481;rank=1 scaffold_7 . exon 1081080 1081949 . + . ID=Physo129481.1;Parent=Physo129481;constitutive=1;rank=1 scaffold_7 . CDS 1082331 1082468 . + 0 ID=Physo129481;Parent=Physo129481;rank=2 scaffold_7 . exon 1082331 1082468 . + . ID=Physo129481.2;Parent=Physo129481;constitutive=1;rank=2 scaffold_7 . repeat_region 1087245 1087271 . ? . description=trf scaffold_7 . biological_region 1095070 1095071 0.999 + . logic_name=eponine scaffold_7 . biological_region 1095442 1095443 0.999 - . logic_name=eponine scaffold_7 . biological_region 1095495 1095502 0.999 + . logic_name=eponine scaffold_7 . biological_region 1095525 1095526 0.999 - . logic_name=eponine scaffold_7 . biological_region 1095561 1095565 0.999 - . logic_name=eponine scaffold_7 . biological_region 1095748 1095752 0.999 + . logic_name=eponine scaffold_7 . repeat_region 1096096 1097124 . + . description=GypsyPi-1c_I-int scaffold_7 ensembl protein_coding_gene 1096678 1100148 . + . ID=Physo108390;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_70035;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1096678 1100148 . + . ID=Physo108390;Parent=Physo108390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1096678 1097151 . + 0 ID=Physo108390;Parent=Physo108390;rank=1 scaffold_7 . exon 1096678 1097151 . + . ID=Physo108390.1;Parent=Physo108390;constitutive=1;rank=1 scaffold_7 . CDS 1097183 1097199 . + 0 ID=Physo108390;Parent=Physo108390;rank=2 scaffold_7 . CDS 1097230 1097579 . + 0 ID=Physo108390;Parent=Physo108390;rank=3 scaffold_7 . CDS 1097654 1097976 . + 0 ID=Physo108390;Parent=Physo108390;rank=4 scaffold_7 . CDS 1098006 1098404 . + 0 ID=Physo108390;Parent=Physo108390;rank=5 scaffold_7 . CDS 1098515 1098519 . + 0 ID=Physo108390;Parent=Physo108390;rank=6 scaffold_7 . CDS 1098705 1098751 . + 0 ID=Physo108390;Parent=Physo108390;rank=7 scaffold_7 . CDS 1098804 1098955 . + 0 ID=Physo108390;Parent=Physo108390;rank=8 scaffold_7 . CDS 1099097 1099240 . + 0 ID=Physo108390;Parent=Physo108390;rank=9 scaffold_7 . CDS 1099387 1099461 . + 0 ID=Physo108390;Parent=Physo108390;rank=10 scaffold_7 . CDS 1100116 1100148 . + 0 ID=Physo108390;Parent=Physo108390;rank=11 scaffold_7 ensembl protein_coding_gene 1088017 1089490 . + . ID=Physo129483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70308;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1088017 1089490 . + . ID=Physo129483;Parent=Physo129483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1088017 1088470 . + 0 ID=Physo129483;Parent=Physo129483;rank=1 scaffold_7 . exon 1088017 1088470 . + . ID=Physo129483.1;Parent=Physo129483;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 . CDS 1088526 1089490 . + 0 ID=Physo129483;Parent=Physo129483;rank=2 scaffold_7 . exon 1088526 1089490 . + . ID=Physo129483.2;Parent=Physo129483;constitutive=1;ensembl_phase=1;rank=2 scaffold_7 ensembl protein_coding_gene 1095400 1096574 . + . ID=Physo129484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70309;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1095400 1096574 . + . ID=Physo129484;Parent=Physo129484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1095400 1095627 . + 0 ID=Physo129484;Parent=Physo129484;rank=1 scaffold_7 . exon 1095400 1095627 . + . ID=Physo129484.1;Parent=Physo129484;constitutive=1;rank=1 scaffold_7 . CDS 1095683 1096228 . + 0 ID=Physo129484;Parent=Physo129484;rank=2 scaffold_7 . exon 1095683 1096228 . + . ID=Physo129484.2;Parent=Physo129484;constitutive=1;rank=2 scaffold_7 . CDS 1096369 1096572 . + 0 ID=Physo129484;Parent=Physo129484;rank=3 scaffold_7 . exon 1096369 1096574 . + . ID=Physo129484.3;Parent=Physo129484;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_7 . exon 1097183 1097199 . + . ID=Physo108390.2;Parent=Physo108390;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_7 . exon 1097230 1097579 . + . ID=Physo108390.3;Parent=Physo108390;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_7 . exon 1097654 1097976 . + . ID=Physo108390.4;Parent=Physo108390;constitutive=1;ensembl_phase=1;rank=4 scaffold_7 . exon 1098006 1098404 . + . ID=Physo108390.5;Parent=Physo108390;constitutive=1;rank=5 scaffold_7 . exon 1098515 1098519 . + . ID=Physo108390.6;Parent=Physo108390;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_7 . exon 1098705 1098751 . + . ID=Physo108390.7;Parent=Physo108390;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_7 . exon 1098804 1098955 . + . ID=Physo108390.8;Parent=Physo108390;constitutive=1;ensembl_phase=1;rank=8 scaffold_7 . exon 1099097 1099240 . + . ID=Physo108390.9;Parent=Physo108390;constitutive=1;rank=9 scaffold_7 . exon 1099387 1099461 . + . ID=Physo108390.10;Parent=Physo108390;constitutive=1;rank=10 scaffold_7 . exon 1100116 1100148 . + . ID=Physo108390.11;Parent=Physo108390;constitutive=1;rank=11 scaffold_7 ensembl protein_coding_gene 1105210 1105566 . - . ID=Physo111966;biotype=protein_coding;external_name=estExt_Genewise1.C_70208;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1105210 1105566 . - . ID=Physo111966;Parent=Physo111966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1105210 1105329 . - 0 ID=Physo111966;Parent=Physo111966;rank=1 scaffold_7 . exon 1105210 1105566 . - . ID=Physo111966.1;Parent=Physo111966;constitutive=1;ensembl_phase=-1;rank=1 scaffold_7 ensembl protein_coding_gene 1101897 1104718 . - . ID=Physo129486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70311;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1101897 1104718 . - . ID=Physo129486;Parent=Physo129486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1101897 1101941 . - 0 ID=Physo129486;Parent=Physo129486;rank=6 scaffold_7 . exon 1101897 1101941 . - . ID=Physo129486.6;Parent=Physo129486;constitutive=1;rank=6 scaffold_7 . CDS 1102010 1102299 . - 0 ID=Physo129486;Parent=Physo129486;rank=5 scaffold_7 . exon 1102010 1102299 . - . ID=Physo129486.5;Parent=Physo129486;constitutive=1;ensembl_phase=1;rank=5 scaffold_7 . CDS 1102371 1102629 . - 0 ID=Physo129486;Parent=Physo129486;rank=4 scaffold_7 . exon 1102371 1102629 . - . ID=Physo129486.4;Parent=Physo129486;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_7 . CDS 1102783 1103251 . - 0 ID=Physo129486;Parent=Physo129486;rank=3 scaffold_7 . exon 1102783 1103251 . - . ID=Physo129486.3;Parent=Physo129486;constitutive=1;ensembl_phase=2;rank=3 scaffold_7 . CDS 1103327 1103627 . - 0 ID=Physo129486;Parent=Physo129486;rank=2 scaffold_7 . exon 1103327 1103627 . - . ID=Physo129486.2;Parent=Physo129486;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_7 . CDS 1104082 1104718 . - 0 ID=Physo129486;Parent=Physo129486;rank=1 scaffold_7 . exon 1104082 1104718 . - . ID=Physo129486.1;Parent=Physo129486;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 1106629 1108289 . - . ID=Physo129487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70312;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1106629 1108289 . - . ID=Physo129487;Parent=Physo129487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1106629 1107218 . - 0 ID=Physo129487;Parent=Physo129487;rank=3 scaffold_7 . exon 1106629 1107218 . - . ID=Physo129487.3;Parent=Physo129487;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 1107601 1108059 . - 0 ID=Physo129487;Parent=Physo129487;rank=2 scaffold_7 . CDS 1108268 1108289 . - 0 ID=Physo129487;Parent=Physo129487;rank=1 scaffold_7 . biological_region 1107567 1107574 0.999 + . logic_name=eponine scaffold_7 . repeat_region 1107589 1107651 . ? . description=dust scaffold_7 . biological_region 1107589 1107591 0.999 - . logic_name=eponine scaffold_7 . biological_region 1107605 1107609 0.999 + . logic_name=eponine scaffold_7 . repeat_region 1107619 1107656 . ? . description=trf scaffold_7 . biological_region 1107648 1107661 0.999 - . logic_name=eponine scaffold_7 . biological_region 1107671 1107673 0.999 - . logic_name=eponine scaffold_7 . repeat_region 1112730 1112746 . ? . description=dust scaffold_7 . repeat_region 1115326 1115335 . ? . description=dust scaffold_7 . exon 1107601 1108059 . - . ID=Physo129487.2;Parent=Physo129487;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . exon 1108268 1108289 . - . ID=Physo129487.1;Parent=Physo129487;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_7 ensembl protein_coding_gene 1113053 1113694 . + . ID=Physo129488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70313;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1113053 1113694 . + . ID=Physo129488;Parent=Physo129488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1113053 1113229 . + 0 ID=Physo129488;Parent=Physo129488;rank=1 scaffold_7 . exon 1113053 1113229 . + . ID=Physo129488.1;Parent=Physo129488;constitutive=1;rank=1 scaffold_7 . CDS 1113545 1113694 . + 0 ID=Physo129488;Parent=Physo129488;rank=2 scaffold_7 . exon 1113545 1113694 . + . ID=Physo129488.2;Parent=Physo129488;constitutive=1;rank=2 scaffold_7 ensembl protein_coding_gene 1122056 1124217 . - . ID=Physo129489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_70314;logic_name=jgi_physo1_1 scaffold_7 ensembl transcript 1122056 1124217 . - . ID=Physo129489;Parent=Physo129489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_7 . CDS 1122056 1122231 . - 0 ID=Physo129489;Parent=Physo129489;rank=7 scaffold_7 . exon 1122056 1122231 . - . ID=Physo129489.7;Parent=Physo129489;constitutive=1;ensembl_phase=1;rank=7 scaffold_7 . CDS 1122274 1122628 . - 0 ID=Physo129489;Parent=Physo129489;rank=6 scaffold_7 . exon 1122274 1122628 . - . ID=Physo129489.6;Parent=Physo129489;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_7 . CDS 1122679 1122855 . - 0 ID=Physo129489;Parent=Physo129489;rank=5 scaffold_7 . exon 1122679 1122855 . - . ID=Physo129489.5;Parent=Physo129489;constitutive=1;rank=5 scaffold_7 . CDS 1122884 1122997 . - 0 ID=Physo129489;Parent=Physo129489;rank=4 scaffold_7 . exon 1122884 1122997 . - . ID=Physo129489.4;Parent=Physo129489;constitutive=1;rank=4 scaffold_7 . CDS 1123235 1123500 . - 0 ID=Physo129489;Parent=Physo129489;rank=3 scaffold_7 . exon 1123235 1123500 . - . ID=Physo129489.3;Parent=Physo129489;constitutive=1;ensembl_phase=1;rank=3 scaffold_7 . CDS 1123570 1124091 . - 0 ID=Physo129489;Parent=Physo129489;rank=2 scaffold_7 . exon 1123570 1124091 . - . ID=Physo129489.2;Parent=Physo129489;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_7 . CDS 1124130 1124217 . - 0 ID=Physo129489;Parent=Physo129489;rank=1 scaffold_7 . exon 1124130 1124217 . - . ID=Physo129489.1;Parent=Physo129489;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_6 1 1231415 scaffold_6 . biological_region 25 31 0.999 + . logic_name=eponine scaffold_6 . biological_region 586 588 0.999 + . logic_name=eponine scaffold_6 . biological_region 623 624 0.999 + . logic_name=eponine scaffold_6 . biological_region 634 636 0.999 - . logic_name=eponine scaffold_6 . biological_region 642 646 0.999 + . logic_name=eponine scaffold_6 . biological_region 672 673 0.999 - . logic_name=eponine scaffold_6 . biological_region 728 733 0.999 - . logic_name=eponine scaffold_6 . biological_region 756 759 0.999 - . logic_name=eponine scaffold_6 . biological_region 944 950 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1023 2059 . ? . description=dust scaffold_6 . repeat_region 2813 2853 . ? . description=trf scaffold_6 . repeat_region 2813 2856 . ? . description=trf scaffold_6 . biological_region 2940 2944 0.999 + . logic_name=eponine scaffold_6 . repeat_region 3721 3856 . ? . description=dust scaffold_6 . repeat_region 4683 5536 . ? . description=dust scaffold_6 ensembl protein_coding_gene 48 3340 . + . ID=Physo128844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60001;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 48 3340 . + . ID=Physo128844;Parent=Physo128844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 48 236 . + . ID=Physo128844.1;Parent=Physo128844;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 135 236 . + 0 ID=Physo128844;Parent=Physo128844;rank=1 scaffold_6 . CDS 275 655 . + 0 ID=Physo128844;Parent=Physo128844;rank=2 scaffold_6 . exon 275 655 . + . ID=Physo128844.2;Parent=Physo128844;constitutive=1;rank=2 scaffold_6 . CDS 705 1019 . + 0 ID=Physo128844;Parent=Physo128844;rank=3 scaffold_6 . exon 705 1019 . + . ID=Physo128844.3;Parent=Physo128844;constitutive=1;rank=3 scaffold_6 . CDS 2698 2790 . + 0 ID=Physo128844;Parent=Physo128844;rank=4 scaffold_6 . exon 2698 2790 . + . ID=Physo128844.4;Parent=Physo128844;constitutive=1;rank=4 scaffold_6 . CDS 2861 3340 . + 0 ID=Physo128844;Parent=Physo128844;rank=5 scaffold_6 . exon 2861 3340 . + . ID=Physo128844.5;Parent=Physo128844;constitutive=1;rank=5 scaffold_6 ensembl protein_coding_gene 9147 10828 . - . ID=Physo128845;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60002;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 9147 10828 . - . ID=Physo128845;Parent=Physo128845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 9147 9236 . - 0 ID=Physo128845;Parent=Physo128845;rank=8 scaffold_6 . exon 9147 9236 . - . ID=Physo128845.8;Parent=Physo128845;constitutive=1;rank=8 scaffold_6 . CDS 9264 9359 . - 0 ID=Physo128845;Parent=Physo128845;rank=7 scaffold_6 . exon 9264 9359 . - . ID=Physo128845.7;Parent=Physo128845;constitutive=1;rank=7 scaffold_6 . CDS 9570 9600 . - 0 ID=Physo128845;Parent=Physo128845;rank=6 scaffold_6 . exon 9570 9600 . - . ID=Physo128845.6;Parent=Physo128845;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 9665 9858 . - 0 ID=Physo128845;Parent=Physo128845;rank=5 scaffold_6 . exon 9665 9858 . - . ID=Physo128845.5;Parent=Physo128845;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 10002 10107 . - 0 ID=Physo128845;Parent=Physo128845;rank=4 scaffold_6 . CDS 10168 10419 . - 0 ID=Physo128845;Parent=Physo128845;rank=3 scaffold_6 . CDS 10500 10570 . - 0 ID=Physo128845;Parent=Physo128845;rank=2 scaffold_6 . CDS 10646 10828 . - 0 ID=Physo128845;Parent=Physo128845;rank=1 scaffold_6 . exon 10002 10107 . - . ID=Physo128845.4;Parent=Physo128845;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . exon 10168 10419 . - . ID=Physo128845.3;Parent=Physo128845;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . exon 10500 10570 . - . ID=Physo128845.2;Parent=Physo128845;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . exon 10646 10828 . - . ID=Physo128845.1;Parent=Physo128845;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 11070 12279 . + . ID=Physo128846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60003;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 11070 12279 . + . ID=Physo128846;Parent=Physo128846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 11070 11196 . + 0 ID=Physo128846;Parent=Physo128846;rank=1 scaffold_6 . exon 11070 11196 . + . ID=Physo128846.1;Parent=Physo128846;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 11267 12279 . + 0 ID=Physo128846;Parent=Physo128846;rank=2 scaffold_6 . exon 11267 12279 . + . ID=Physo128846.2;Parent=Physo128846;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 12705 26593 . - . ID=Physo128847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60004;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 12705 26593 . - . ID=Physo128847;Parent=Physo128847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 12705 12816 . - 0 ID=Physo128847;Parent=Physo128847;rank=5 scaffold_6 . exon 12705 12816 . - . ID=Physo128847.5;Parent=Physo128847;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 12837 14197 . - 0 ID=Physo128847;Parent=Physo128847;rank=4 scaffold_6 . exon 12837 14197 . - . ID=Physo128847.4;Parent=Physo128847;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 14288 14787 . - 0 ID=Physo128847;Parent=Physo128847;rank=3 scaffold_6 . exon 14288 14787 . - . ID=Physo128847.3;Parent=Physo128847;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 14875 14986 . - 0 ID=Physo128847;Parent=Physo128847;rank=2 scaffold_6 . exon 14875 14986 . - . ID=Physo128847.2;Parent=Physo128847;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 15107 26593 . - 0 ID=Physo128847;Parent=Physo128847;rank=1 scaffold_6 . exon 15107 26593 . - . ID=Physo128847.1;Parent=Physo128847;constitutive=1;rank=1 scaffold_6 . biological_region 21125 21126 0.999 + . logic_name=eponine scaffold_6 . biological_region 21160 21164 0.999 - . logic_name=eponine scaffold_6 . biological_region 24376 24377 0.999 - . logic_name=eponine scaffold_6 . biological_region 25214 25214 0.999 - . logic_name=eponine scaffold_6 . biological_region 25268 25271 0.999 + . logic_name=eponine scaffold_6 . biological_region 26257 26260 0.999 + . logic_name=eponine scaffold_6 . biological_region 26577 26580 0.999 - . logic_name=eponine scaffold_6 . repeat_region 27086 27162 . ? . description=trf scaffold_6 . repeat_region 27889 27906 . ? . description=dust scaffold_6 . biological_region 29724 29729 0.999 + . logic_name=eponine scaffold_6 . biological_region 29735 29735 0.999 - . logic_name=eponine scaffold_6 . biological_region 29750 29751 0.999 - . logic_name=eponine scaffold_6 . biological_region 29788 29793 0.999 + . logic_name=eponine scaffold_6 . biological_region 29790 29792 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 28054 28780 . + . ID=Physo128848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60005;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 28054 28780 . + . ID=Physo128848;Parent=Physo128848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 28054 28317 . + 0 ID=Physo128848;Parent=Physo128848;rank=1 scaffold_6 . exon 28054 28317 . + . ID=Physo128848.1;Parent=Physo128848;constitutive=1;rank=1 scaffold_6 . CDS 28700 28780 . + 0 ID=Physo128848;Parent=Physo128848;rank=2 scaffold_6 . exon 28700 28780 . + . ID=Physo128848.2;Parent=Physo128848;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 29372 32073 . + . ID=Physo128849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60006;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 29372 32073 . + . ID=Physo128849;Parent=Physo128849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 29372 30015 . + 0 ID=Physo128849;Parent=Physo128849;rank=1 scaffold_6 . exon 29372 30015 . + . ID=Physo128849.1;Parent=Physo128849;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 30083 30203 . + 0 ID=Physo128849;Parent=Physo128849;rank=2 scaffold_6 . CDS 30888 31059 . + 0 ID=Physo128849;Parent=Physo128849;rank=3 scaffold_6 . CDS 31082 31744 . + 0 ID=Physo128849;Parent=Physo128849;rank=4 scaffold_6 . CDS 31784 32073 . + 0 ID=Physo128849;Parent=Physo128849;rank=5 scaffold_6 . exon 30083 30203 . + . ID=Physo128849.2;Parent=Physo128849;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . exon 30888 31059 . + . ID=Physo128849.3;Parent=Physo128849;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . exon 31082 31744 . + . ID=Physo128849.4;Parent=Physo128849;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . exon 31784 32073 . + . ID=Physo128849.5;Parent=Physo128849;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 ensembl protein_coding_gene 32424 34101 . - . ID=Physo128850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60007;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 32424 34101 . - . ID=Physo128850;Parent=Physo128850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 32424 32695 . - 0 ID=Physo128850;Parent=Physo128850;rank=5 scaffold_6 . exon 32424 32695 . - . ID=Physo128850.5;Parent=Physo128850;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 32862 32973 . - 0 ID=Physo128850;Parent=Physo128850;rank=4 scaffold_6 . exon 32862 32973 . - . ID=Physo128850.4;Parent=Physo128850;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 33037 33397 . - 0 ID=Physo128850;Parent=Physo128850;rank=3 scaffold_6 . exon 33037 33397 . - . ID=Physo128850.3;Parent=Physo128850;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 33458 33661 . - 0 ID=Physo128850;Parent=Physo128850;rank=2 scaffold_6 . exon 33458 33661 . - . ID=Physo128850.2;Parent=Physo128850;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 34061 34101 . - 0 ID=Physo128850;Parent=Physo128850;rank=1 scaffold_6 . exon 34061 34101 . - . ID=Physo128850.1;Parent=Physo128850;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 37359 39576 . - . ID=Physo128851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60008;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 37359 39576 . - . ID=Physo128851;Parent=Physo128851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 37359 37554 . - 0 ID=Physo128851;Parent=Physo128851;rank=6 scaffold_6 . exon 37359 37554 . - . ID=Physo128851.6;Parent=Physo128851;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 37594 37730 . - 0 ID=Physo128851;Parent=Physo128851;rank=5 scaffold_6 . exon 37594 37730 . - . ID=Physo128851.5;Parent=Physo128851;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 37871 38164 . - 0 ID=Physo128851;Parent=Physo128851;rank=4 scaffold_6 . exon 37871 38164 . - . ID=Physo128851.4;Parent=Physo128851;constitutive=1;rank=4 scaffold_6 . CDS 38197 38298 . - 0 ID=Physo128851;Parent=Physo128851;rank=3 scaffold_6 . exon 38197 38298 . - . ID=Physo128851.3;Parent=Physo128851;constitutive=1;rank=3 scaffold_6 . CDS 38457 39068 . - 0 ID=Physo128851;Parent=Physo128851;rank=2 scaffold_6 . exon 38457 39068 . - . ID=Physo128851.2;Parent=Physo128851;constitutive=1;rank=2 scaffold_6 . CDS 39136 39576 . - 0 ID=Physo128851;Parent=Physo128851;rank=1 scaffold_6 . exon 39136 39576 . - . ID=Physo128851.1;Parent=Physo128851;constitutive=1;rank=1 scaffold_6 . repeat_region 41015 41022 . ? . description=dust scaffold_6 . biological_region 44421 44422 0.999 - . logic_name=eponine scaffold_6 . biological_region 47661 47661 0.999 + . logic_name=eponine scaffold_6 . biological_region 48386 48388 0.999 + . logic_name=eponine scaffold_6 . repeat_region 48616 48638 . ? . description=trf scaffold_6 ensembl protein_coding_gene 40420 40917 . + . ID=Physo128852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60009;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 40420 40917 . + . ID=Physo128852;Parent=Physo128852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 40420 40917 . + 0 ID=Physo128852;Parent=Physo128852;rank=1 scaffold_6 . exon 40420 40917 . + . ID=Physo128852.1;Parent=Physo128852;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 41567 42706 . + . ID=Physo128853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60010;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 41567 42706 . + . ID=Physo128853;Parent=Physo128853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 41567 41591 . + 0 ID=Physo128853;Parent=Physo128853;rank=1 scaffold_6 . exon 41567 41591 . + . ID=Physo128853.1;Parent=Physo128853;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 41649 42310 . + 0 ID=Physo128853;Parent=Physo128853;rank=2 scaffold_6 . exon 41649 42310 . + . ID=Physo128853.2;Parent=Physo128853;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 42387 42656 . + 0 ID=Physo128853;Parent=Physo128853;rank=3 scaffold_6 . exon 42387 42656 . + . ID=Physo128853.3;Parent=Physo128853;constitutive=1;rank=3 scaffold_6 . CDS 42698 42706 . + 0 ID=Physo128853;Parent=Physo128853;rank=4 scaffold_6 . exon 42698 42706 . + . ID=Physo128853.4;Parent=Physo128853;constitutive=1;rank=4 scaffold_6 ensembl protein_coding_gene 43965 48582 . - . ID=Physo128854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60011;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 43965 48582 . - . ID=Physo128854;Parent=Physo128854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 43965 44165 . - 0 ID=Physo128854;Parent=Physo128854;rank=3 scaffold_6 . exon 43965 44165 . - . ID=Physo128854.3;Parent=Physo128854;constitutive=1;rank=3 scaffold_6 . CDS 44236 46279 . - 0 ID=Physo128854;Parent=Physo128854;rank=2 scaffold_6 . exon 44236 46279 . - . ID=Physo128854.2;Parent=Physo128854;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 46703 48582 . - 0 ID=Physo128854;Parent=Physo128854;rank=1 scaffold_6 . exon 46703 48582 . - . ID=Physo128854.1;Parent=Physo128854;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 49107 50109 . + . ID=Physo128855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60012;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 49107 50109 . + . ID=Physo128855;Parent=Physo128855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 49107 50038 . + 0 ID=Physo128855;Parent=Physo128855;rank=1 scaffold_6 . exon 49107 50038 . + . ID=Physo128855.1;Parent=Physo128855;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 50085 50109 . + 0 ID=Physo128855;Parent=Physo128855;rank=2 scaffold_6 . exon 50085 50109 . + . ID=Physo128855.2;Parent=Physo128855;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 ensembl protein_coding_gene 51969 53618 . - . ID=Physo128856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60013;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 51969 53618 . - . ID=Physo128856;Parent=Physo128856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 51969 53618 . - 0 ID=Physo128856;Parent=Physo128856;rank=1 scaffold_6 . exon 51969 53618 . - . ID=Physo128856.1;Parent=Physo128856;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 56543 58336 . - . ID=Physo128857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60014;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 56543 58336 . - . ID=Physo128857;Parent=Physo128857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 56543 58336 . - 0 ID=Physo128857;Parent=Physo128857;rank=1 scaffold_6 . exon 56543 58336 . - . ID=Physo128857.1;Parent=Physo128857;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 59411 60500 . + . ID=Physo128858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60015;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 59411 60500 . + . ID=Physo128858;Parent=Physo128858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 59411 59838 . + 0 ID=Physo128858;Parent=Physo128858;rank=1 scaffold_6 . exon 59411 59838 . + . ID=Physo128858.1;Parent=Physo128858;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 59932 59976 . + 0 ID=Physo128858;Parent=Physo128858;rank=2 scaffold_6 . CDS 60029 60500 . + 0 ID=Physo128858;Parent=Physo128858;rank=3 scaffold_6 . repeat_region 59702 59752 . ? . description=dust scaffold_6 . biological_region 60386 60388 0.999 - . logic_name=eponine scaffold_6 . biological_region 66052 66056 0.999 + . logic_name=eponine scaffold_6 . repeat_region 69323 69343 . ? . description=trf scaffold_6 . biological_region 69395 69400 0.999 + . logic_name=eponine scaffold_6 . biological_region 69415 69419 0.999 + . logic_name=eponine scaffold_6 . biological_region 69427 69429 0.999 - . logic_name=eponine scaffold_6 . biological_region 69447 69450 0.999 + . logic_name=eponine scaffold_6 . biological_region 69481 69487 0.999 - . logic_name=eponine scaffold_6 . biological_region 69484 69492 0.999 + . logic_name=eponine scaffold_6 . biological_region 69492 69494 0.999 - . logic_name=eponine scaffold_6 . exon 59932 59976 . + . ID=Physo128858.2;Parent=Physo128858;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . exon 60029 60500 . + . ID=Physo128858.3;Parent=Physo128858;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 ensembl protein_coding_gene 69219 71264 . + . ID=Physo128859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60016;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 69219 71264 . + . ID=Physo128859;Parent=Physo128859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 69219 71264 . + 0 ID=Physo128859;Parent=Physo128859;rank=1 scaffold_6 . exon 69219 71264 . + . ID=Physo128859.1;Parent=Physo128859;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 73287 76495 . + . ID=Physo128860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60017;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 73287 76495 . + . ID=Physo128860;Parent=Physo128860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 73287 76016 . + 0 ID=Physo128860;Parent=Physo128860;rank=1 scaffold_6 . exon 73287 76495 . + . ID=Physo128860.1;Parent=Physo128860;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 77048 78679 . + . ID=Physo128861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60018;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 77048 78679 . + . ID=Physo128861;Parent=Physo128861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 77048 77241 . + 0 ID=Physo128861;Parent=Physo128861;rank=1 scaffold_6 . exon 77048 77241 . + . ID=Physo128861.1;Parent=Physo128861;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 77320 78679 . + 0 ID=Physo128861;Parent=Physo128861;rank=2 scaffold_6 . exon 77320 78679 . + . ID=Physo128861.2;Parent=Physo128861;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 ensembl protein_coding_gene 78749 81352 . - . ID=Physo128862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60019;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 78749 81352 . - . ID=Physo128862;Parent=Physo128862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 78749 81352 . - 0 ID=Physo128862;Parent=Physo128862;rank=1 scaffold_6 . exon 78749 81352 . - . ID=Physo128862.1;Parent=Physo128862;constitutive=1;rank=1 scaffold_6 . biological_region 79919 79922 0.999 - . logic_name=eponine scaffold_6 . biological_region 80987 80989 0.999 + . logic_name=eponine scaffold_6 . biological_region 81127 81129 0.999 + . logic_name=eponine scaffold_6 . repeat_region 82335 82360 . ? . description=dust scaffold_6 . repeat_region 82335 82360 . ? . description=trf scaffold_6 . repeat_region 82428 82455 . ? . description=dust scaffold_6 . repeat_region 82483 82500 . ? . description=dust scaffold_6 . repeat_region 82572 82595 . ? . description=dust scaffold_6 . biological_region 83028 83031 0.999 + . logic_name=eponine scaffold_6 . biological_region 83546 83551 0.999 + . logic_name=eponine scaffold_6 . biological_region 83566 83568 0.999 + . logic_name=eponine scaffold_6 . biological_region 83681 83684 0.999 - . logic_name=eponine scaffold_6 . repeat_region 84062 84108 . ? . description=dust scaffold_6 . repeat_region 84355 84382 . ? . description=trf scaffold_6 . biological_region 85049 85052 0.999 + . logic_name=eponine scaffold_6 . repeat_region 85218 85262 . ? . description=trf scaffold_6 . biological_region 85562 85564 0.999 + . logic_name=eponine scaffold_6 . biological_region 86344 86348 0.999 + . logic_name=eponine scaffold_6 . biological_region 86396 86398 0.999 + . logic_name=eponine scaffold_6 . biological_region 86433 86436 0.999 + . logic_name=eponine scaffold_6 . biological_region 86483 86485 0.999 + . logic_name=eponine scaffold_6 . biological_region 86485 86491 0.999 - . logic_name=eponine scaffold_6 . biological_region 86592 86595 0.999 - . logic_name=eponine scaffold_6 . biological_region 86729 86733 0.999 + . logic_name=eponine scaffold_6 . biological_region 88770 88770 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 84607 85470 . - . ID=Physo111735;biotype=protein_coding;external_name=estExt_Genewise1.C_60327;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 84607 85470 . - . ID=Physo111735;Parent=Physo111735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 84607 84727 . - 0 ID=Physo111735;Parent=Physo111735;rank=3 scaffold_6 . exon 84607 84727 . - . ID=Physo111735.3;Parent=Physo111735;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 84796 85133 . - 0 ID=Physo111735;Parent=Physo111735;rank=2 scaffold_6 . exon 84796 85133 . - . ID=Physo111735.2;Parent=Physo111735;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 85285 85458 . - 0 ID=Physo111735;Parent=Physo111735;rank=1 scaffold_6 . exon 85285 85470 . - . ID=Physo111735.1;Parent=Physo111735;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 86141 86917 . + . ID=Physo128864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60021;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 86141 86917 . + . ID=Physo128864;Parent=Physo128864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 86141 86917 . + 0 ID=Physo128864;Parent=Physo128864;rank=1 scaffold_6 . exon 86141 86917 . + . ID=Physo128864.1;Parent=Physo128864;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 87026 89167 . - . ID=Physo128865;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60022;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 87026 89167 . - . ID=Physo128865;Parent=Physo128865;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 87026 89167 . - 0 ID=Physo128865;Parent=Physo128865;rank=1 scaffold_6 . exon 87026 89167 . - . ID=Physo128865.1;Parent=Physo128865;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 89943 92208 . - . ID=Physo128866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60023;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 89943 92208 . - . ID=Physo128866;Parent=Physo128866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 89943 91843 . - 0 ID=Physo128866;Parent=Physo128866;rank=2 scaffold_6 . exon 89943 91843 . - . ID=Physo128866.2;Parent=Physo128866;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 91944 92208 . - 0 ID=Physo128866;Parent=Physo128866;rank=1 scaffold_6 . exon 91944 92208 . - . ID=Physo128866.1;Parent=Physo128866;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 92662 94050 . - . ID=Physo128867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60024;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 92662 94050 . - . ID=Physo128867;Parent=Physo128867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 92662 94050 . - 0 ID=Physo128867;Parent=Physo128867;rank=1 scaffold_6 . exon 92662 94050 . - . ID=Physo128867.1;Parent=Physo128867;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 95152 96688 . - . ID=Physo128868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60025;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 95152 96688 . - . ID=Physo128868;Parent=Physo128868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 95152 96590 . - 0 ID=Physo128868;Parent=Physo128868;rank=2 scaffold_6 . exon 95152 96590 . - . ID=Physo128868.2;Parent=Physo128868;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 96616 96688 . - 0 ID=Physo128868;Parent=Physo128868;rank=1 scaffold_6 . exon 96616 96688 . - . ID=Physo128868.1;Parent=Physo128868;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . repeat_region 99534 99544 . ? . description=dust scaffold_6 . repeat_region 100381 100394 . ? . description=dust scaffold_6 . repeat_region 104814 104824 . ? . description=dust scaffold_6 . repeat_region 106918 108272 . ? . description=dust scaffold_6 . biological_region 108579 108582 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 105529 106689 . - . ID=Physo128869;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60026;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 105529 106689 . - . ID=Physo128869;Parent=Physo128869;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 105529 106168 . - . ID=Physo128869.2;Parent=Physo128869;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_6 . CDS 105587 106168 . - 0 ID=Physo128869;Parent=Physo128869;rank=2 scaffold_6 . CDS 106402 106689 . - 0 ID=Physo128869;Parent=Physo128869;rank=1 scaffold_6 . exon 106402 106689 . - . ID=Physo128869.1;Parent=Physo128869;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 108741 109878 . - . ID=Physo128870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60027;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 108741 109878 . - . ID=Physo128870;Parent=Physo128870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 108741 108786 . - 0 ID=Physo128870;Parent=Physo128870;rank=4 scaffold_6 . exon 108741 108786 . - . ID=Physo128870.4;Parent=Physo128870;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 108929 108986 . - 0 ID=Physo128870;Parent=Physo128870;rank=3 scaffold_6 . exon 108929 108986 . - . ID=Physo128870.3;Parent=Physo128870;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_6 . CDS 109097 109618 . - 0 ID=Physo128870;Parent=Physo128870;rank=2 scaffold_6 . exon 109097 109618 . - . ID=Physo128870.2;Parent=Physo128870;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 109668 109878 . - 0 ID=Physo128870;Parent=Physo128870;rank=1 scaffold_6 . repeat_region 112267 114091 . + . description=SSU-rRNA_Tps scaffold_6 . repeat_region 114921 117130 . + . description=LSU-rRNA_Hca scaffold_6 . repeat_region 118223 118281 . ? . description=trf scaffold_6 . repeat_region 118442 118503 . ? . description=trf scaffold_6 . repeat_region 118442 118506 . + . description=(CAACC)n scaffold_6 . repeat_region 118832 118871 . ? . description=trf scaffold_6 ensembl rRNA_gene 112268 114094 . + . ID=EPrPSOG00000000051;biotype=rRNA;description=18s_rRNA [Source:RNAMMER%3BAcc:18s_rRNA];external_name=18s_rRNA;logic_name=ncrna_eg scaffold_6 ensembl rRNA 112268 114094 . + . ID=EPrPSOT00000000051;Parent=EPrPSOG00000000051;biotype=rRNA;logic_name=ncrna_eg scaffold_6 . exon 112268 114094 . + . ID=EPrPSOE00000000051;Parent=EPrPSOT00000000051;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 111629 114576 . - . ID=Physo111739;biotype=protein_coding;external_name=estExt_Genewise1.C_60331;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 111629 114576 . - . ID=Physo111739;Parent=Physo111739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 111629 114576 . - . ID=Physo111739.1;Parent=Physo111739;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 111662 111955 . - 0 ID=Physo111739;Parent=Physo111739;rank=1 scaffold_6 ensembl pseudogene 114937 117130 . + . ID=Physo111741;biotype=pseudogene;external_name=estExt_Genewise1.C_60333;logic_name=jgi_physo1_1 scaffold_6 ensembl pseudogene 114937 117130 . + . ID=Physo111741;Parent=Physo111741;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_6 . exon 114937 117130 . + . ID=Physo111741.1;Parent=Physo111741;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . exon 109668 109878 . - . ID=Physo128870.1;Parent=Physo128870;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . repeat_region 119338 124017 . ? . description=dust scaffold_6 . repeat_region 124672 124680 . ? . description=dust scaffold_6 . repeat_region 126115 126164 . ? . description=dust scaffold_6 . biological_region 127016 127021 0.999 - . logic_name=eponine scaffold_6 . repeat_region 127179 127186 . ? . description=dust scaffold_6 . repeat_region 128665 128673 . ? . description=dust scaffold_6 . repeat_region 133685 133737 . ? . description=trf scaffold_6 ensembl protein_coding_gene 130824 131841 . + . ID=Physo128871;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60028;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 130824 131841 . + . ID=Physo128871;Parent=Physo128871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 130824 131186 . + 0 ID=Physo128871;Parent=Physo128871;rank=1 scaffold_6 . exon 130824 131186 . + . ID=Physo128871.1;Parent=Physo128871;constitutive=1;rank=1 scaffold_6 . CDS 131212 131491 . + 0 ID=Physo128871;Parent=Physo128871;rank=2 scaffold_6 . exon 131212 131491 . + . ID=Physo128871.2;Parent=Physo128871;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 131576 131841 . + 0 ID=Physo128871;Parent=Physo128871;rank=3 scaffold_6 . exon 131576 131841 . + . ID=Physo128871.3;Parent=Physo128871;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . repeat_region 145297 145305 . ? . description=dust scaffold_6 . repeat_region 147209 147240 . ? . description=dust scaffold_6 . biological_region 147355 147355 0.999 - . logic_name=eponine scaffold_6 . repeat_region 148544 148552 . ? . description=dust scaffold_6 ensembl protein_coding_gene 140364 140815 . - . ID=Physo128872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60029;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 140364 140815 . - . ID=Physo128872;Parent=Physo128872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 140364 140435 . - 0 ID=Physo128872;Parent=Physo128872;rank=3 scaffold_6 . exon 140364 140435 . - . ID=Physo128872.3;Parent=Physo128872;constitutive=1;rank=3 scaffold_6 . CDS 140455 140648 . - 0 ID=Physo128872;Parent=Physo128872;rank=2 scaffold_6 . exon 140455 140648 . - . ID=Physo128872.2;Parent=Physo128872;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 140683 140815 . - 0 ID=Physo128872;Parent=Physo128872;rank=1 scaffold_6 . exon 140683 140815 . - . ID=Physo128872.1;Parent=Physo128872;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 141278 142126 . + . ID=Physo128873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60030;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 141278 142126 . + . ID=Physo128873;Parent=Physo128873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 141278 142126 . + 0 ID=Physo128873;Parent=Physo128873;rank=1 scaffold_6 . exon 141278 142126 . + . ID=Physo128873.1;Parent=Physo128873;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 143703 145135 . - . ID=Physo128874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60031;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 143703 145135 . - . ID=Physo128874;Parent=Physo128874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 143703 144385 . - 0 ID=Physo128874;Parent=Physo128874;rank=2 scaffold_6 . exon 143703 144385 . - . ID=Physo128874.2;Parent=Physo128874;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 144922 145135 . - 0 ID=Physo128874;Parent=Physo128874;rank=1 scaffold_6 . exon 144922 145135 . - . ID=Physo128874.1;Parent=Physo128874;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 150424 151548 . + . ID=Physo128875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60032;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 150424 151548 . + . ID=Physo128875;Parent=Physo128875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 150424 150634 . + 0 ID=Physo128875;Parent=Physo128875;rank=1 scaffold_6 . exon 150424 150634 . + . ID=Physo128875.1;Parent=Physo128875;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 150684 151205 . + 0 ID=Physo128875;Parent=Physo128875;rank=2 scaffold_6 . exon 150684 151205 . + . ID=Physo128875.2;Parent=Physo128875;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 151316 151548 . + 0 ID=Physo128875;Parent=Physo128875;rank=3 scaffold_6 . exon 151316 151548 . + . ID=Physo128875.3;Parent=Physo128875;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 ensembl protein_coding_gene 156455 157801 . - . ID=Physo128876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60033;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 156455 157801 . - . ID=Physo128876;Parent=Physo128876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 156455 157030 . - . ID=Physo128876.3;Parent=Physo128876;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_6 . CDS 156513 157030 . - 0 ID=Physo128876;Parent=Physo128876;rank=3 scaffold_6 . CDS 157105 157258 . - 0 ID=Physo128876;Parent=Physo128876;rank=2 scaffold_6 . exon 157105 157258 . - . ID=Physo128876.2;Parent=Physo128876;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 157325 157801 . - 0 ID=Physo128876;Parent=Physo128876;rank=1 scaffold_6 . exon 157325 157801 . - . ID=Physo128876.1;Parent=Physo128876;constitutive=1;rank=1 scaffold_6 . biological_region 162663 162666 0.999 - . logic_name=eponine scaffold_6 . biological_region 164271 164272 0.999 + . logic_name=eponine scaffold_6 . biological_region 168293 168295 0.999 + . logic_name=eponine scaffold_6 . repeat_region 168459 168507 . ? . description=trf scaffold_6 ensembl protein_coding_gene 167677 168698 . - . ID=Physo128877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60034;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 167677 168698 . - . ID=Physo128877;Parent=Physo128877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 167677 167721 . - 0 ID=Physo128877;Parent=Physo128877;rank=4 scaffold_6 . exon 167677 167721 . - . ID=Physo128877.4;Parent=Physo128877;constitutive=1;rank=4 scaffold_6 . CDS 167754 167768 . - 0 ID=Physo128877;Parent=Physo128877;rank=3 scaffold_6 . exon 167754 167768 . - . ID=Physo128877.3;Parent=Physo128877;constitutive=1;rank=3 scaffold_6 . CDS 168269 168625 . - 0 ID=Physo128877;Parent=Physo128877;rank=2 scaffold_6 . exon 168269 168625 . - . ID=Physo128877.2;Parent=Physo128877;constitutive=1;rank=2 scaffold_6 . CDS 168687 168698 . - 0 ID=Physo128877;Parent=Physo128877;rank=1 scaffold_6 . exon 168687 168698 . - . ID=Physo128877.1;Parent=Physo128877;constitutive=1;rank=1 scaffold_6 . repeat_region 172630 172639 . ? . description=dust scaffold_6 . repeat_region 174191 174198 . ? . description=dust scaffold_6 . repeat_region 175415 175422 . ? . description=dust scaffold_6 ensembl protein_coding_gene 175733 177796 . + . ID=Physo128878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60035;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 175733 177796 . + . ID=Physo128878;Parent=Physo128878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 175733 176142 . + 0 ID=Physo128878;Parent=Physo128878;rank=1 scaffold_6 . exon 175733 176142 . + . ID=Physo128878.1;Parent=Physo128878;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 176265 176742 . + 0 ID=Physo128878;Parent=Physo128878;rank=2 scaffold_6 . exon 176265 176742 . + . ID=Physo128878.2;Parent=Physo128878;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 176795 177796 . + 0 ID=Physo128878;Parent=Physo128878;rank=3 scaffold_6 . exon 176795 177796 . + . ID=Physo128878.3;Parent=Physo128878;constitutive=1;rank=3 scaffold_6 ensembl protein_coding_gene 178369 179834 . + . ID=Physo128879;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60036;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 178369 179834 . + . ID=Physo128879;Parent=Physo128879;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 178369 179047 . + 0 ID=Physo128879;Parent=Physo128879;rank=1 scaffold_6 . exon 178369 179047 . + . ID=Physo128879.1;Parent=Physo128879;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 179368 179834 . + 0 ID=Physo128879;Parent=Physo128879;rank=2 scaffold_6 . repeat_region 178809 178862 . ? . description=trf scaffold_6 . repeat_region 178828 178861 . ? . description=trf scaffold_6 . repeat_region 185711 185737 . ? . description=trf scaffold_6 . repeat_region 185838 185878 . ? . description=trf scaffold_6 . exon 179368 179834 . + . ID=Physo128879.2;Parent=Physo128879;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 182533 184546 . - . ID=Physo128880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60037;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 182533 184546 . - . ID=Physo128880;Parent=Physo128880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 182533 183471 . - 0 ID=Physo128880;Parent=Physo128880;rank=2 scaffold_6 . exon 182533 183471 . - . ID=Physo128880.2;Parent=Physo128880;constitutive=1;rank=2 scaffold_6 . CDS 183509 184546 . - 0 ID=Physo128880;Parent=Physo128880;rank=1 scaffold_6 . exon 183509 184546 . - . ID=Physo128880.1;Parent=Physo128880;constitutive=1;rank=1 scaffold_6 . repeat_region 188876 188906 . ? . description=dust scaffold_6 . biological_region 190097 190099 0.999 + . logic_name=eponine scaffold_6 . biological_region 194841 194844 0.999 + . logic_name=eponine scaffold_6 . repeat_region 195096 195139 . ? . description=dust scaffold_6 . biological_region 196037 196041 0.999 - . logic_name=eponine scaffold_6 . repeat_region 198063 198088 . ? . description=dust scaffold_6 ensembl protein_coding_gene 190373 196133 . + . ID=Physo128881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60038;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 190373 196133 . + . ID=Physo128881;Parent=Physo128881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 190373 190448 . + 0 ID=Physo128881;Parent=Physo128881;rank=1 scaffold_6 . exon 190373 190448 . + . ID=Physo128881.1;Parent=Physo128881;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 190524 191122 . + 0 ID=Physo128881;Parent=Physo128881;rank=2 scaffold_6 . exon 190524 191122 . + . ID=Physo128881.2;Parent=Physo128881;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 191240 191701 . + 0 ID=Physo128881;Parent=Physo128881;rank=3 scaffold_6 . exon 191240 191701 . + . ID=Physo128881.3;Parent=Physo128881;constitutive=1;rank=3 scaffold_6 . CDS 191914 191970 . + 0 ID=Physo128881;Parent=Physo128881;rank=4 scaffold_6 . exon 191914 191970 . + . ID=Physo128881.4;Parent=Physo128881;constitutive=1;rank=4 scaffold_6 . CDS 191994 192159 . + 0 ID=Physo128881;Parent=Physo128881;rank=5 scaffold_6 . exon 191994 192159 . + . ID=Physo128881.5;Parent=Physo128881;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_6 . CDS 192313 192703 . + 0 ID=Physo128881;Parent=Physo128881;rank=6 scaffold_6 . exon 192313 192703 . + . ID=Physo128881.6;Parent=Physo128881;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_6 . CDS 192759 193206 . + 0 ID=Physo128881;Parent=Physo128881;rank=7 scaffold_6 . exon 192759 193206 . + . ID=Physo128881.7;Parent=Physo128881;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 . CDS 193746 194175 . + 0 ID=Physo128881;Parent=Physo128881;rank=8 scaffold_6 . exon 193746 194175 . + . ID=Physo128881.8;Parent=Physo128881;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_6 . CDS 194328 194492 . + 0 ID=Physo128881;Parent=Physo128881;rank=9 scaffold_6 . exon 194328 194492 . + . ID=Physo128881.9;Parent=Physo128881;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_6 . CDS 194514 194701 . + 0 ID=Physo128881;Parent=Physo128881;rank=10 scaffold_6 . exon 194514 194701 . + . ID=Physo128881.10;Parent=Physo128881;constitutive=1;ensembl_phase=1;rank=10 scaffold_6 . CDS 194795 195056 . + 0 ID=Physo128881;Parent=Physo128881;rank=11 scaffold_6 . exon 194795 195056 . + . ID=Physo128881.11;Parent=Physo128881;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_6 . CDS 195090 195140 . + 0 ID=Physo128881;Parent=Physo128881;rank=12 scaffold_6 . exon 195090 195140 . + . ID=Physo128881.12;Parent=Physo128881;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=12 scaffold_6 . CDS 195254 196021 . + 0 ID=Physo128881;Parent=Physo128881;rank=13 scaffold_6 . exon 195254 196021 . + . ID=Physo128881.13;Parent=Physo128881;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=13 scaffold_6 . CDS 196063 196133 . + 0 ID=Physo128881;Parent=Physo128881;rank=14 scaffold_6 . exon 196063 196133 . + . ID=Physo128881.14;Parent=Physo128881;constitutive=1;ensembl_phase=1;rank=14 scaffold_6 ensembl protein_coding_gene 196479 197992 . + . ID=Physo128882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60039;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 196479 197992 . + . ID=Physo128882;Parent=Physo128882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 196479 197912 . + 0 ID=Physo128882;Parent=Physo128882;rank=1 scaffold_6 . exon 196479 197992 . + . ID=Physo128882.1;Parent=Physo128882;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . repeat_region 198875 198917 . ? . description=trf scaffold_6 . repeat_region 207807 207837 . ? . description=trf scaffold_6 ensembl protein_coding_gene 199673 202849 . + . ID=Physo108311;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60001;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 199673 202849 . + . ID=Physo108311;Parent=Physo108311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 199673 201013 . + 0 ID=Physo108311;Parent=Physo108311;rank=1 scaffold_6 . exon 199673 201013 . + . ID=Physo108311.1;Parent=Physo108311;constitutive=1;rank=1 scaffold_6 . CDS 201230 201456 . + 0 ID=Physo108311;Parent=Physo108311;rank=2 scaffold_6 . exon 201230 201456 . + . ID=Physo108311.2;Parent=Physo108311;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 201489 201548 . + 0 ID=Physo108311;Parent=Physo108311;rank=3 scaffold_6 . exon 201489 201548 . + . ID=Physo108311.3;Parent=Physo108311;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 201584 201647 . + 0 ID=Physo108311;Parent=Physo108311;rank=4 scaffold_6 . exon 201584 201647 . + . ID=Physo108311.4;Parent=Physo108311;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 201692 201936 . + 0 ID=Physo108311;Parent=Physo108311;rank=5 scaffold_6 . exon 201692 201936 . + . ID=Physo108311.5;Parent=Physo108311;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 201977 202023 . + 0 ID=Physo108311;Parent=Physo108311;rank=6 scaffold_6 . exon 201977 202023 . + . ID=Physo108311.6;Parent=Physo108311;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 202060 202061 . + 0 ID=Physo108311;Parent=Physo108311;rank=7 scaffold_6 . exon 202060 202061 . + . ID=Physo108311.7;Parent=Physo108311;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 202094 202320 . + 0 ID=Physo108311;Parent=Physo108311;rank=8 scaffold_6 . exon 202094 202320 . + . ID=Physo108311.8;Parent=Physo108311;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_6 . CDS 202381 202462 . + 0 ID=Physo108311;Parent=Physo108311;rank=9 scaffold_6 . exon 202381 202462 . + . ID=Physo108311.9;Parent=Physo108311;constitutive=1;ensembl_phase=2;rank=9 scaffold_6 . CDS 202493 202849 . + 0 ID=Physo108311;Parent=Physo108311;rank=10 scaffold_6 . exon 202493 202849 . + . ID=Physo108311.10;Parent=Physo108311;constitutive=1;rank=10 scaffold_6 ensembl protein_coding_gene 198929 199565 . + . ID=Physo128883;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60040;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 198929 199565 . + . ID=Physo128883;Parent=Physo128883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 198929 199320 . + 0 ID=Physo128883;Parent=Physo128883;rank=1 scaffold_6 . exon 198929 199320 . + . ID=Physo128883.1;Parent=Physo128883;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 199369 199564 . + 0 ID=Physo128883;Parent=Physo128883;rank=2 scaffold_6 . exon 199369 199565 . + . ID=Physo128883.2;Parent=Physo128883;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_6 ensembl protein_coding_gene 206699 209897 . + . ID=Physo128885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60042;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 206699 209897 . + . ID=Physo128885;Parent=Physo128885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 206699 206864 . + 0 ID=Physo128885;Parent=Physo128885;rank=1 scaffold_6 . exon 206699 206864 . + . ID=Physo128885.1;Parent=Physo128885;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 206927 207028 . + 0 ID=Physo128885;Parent=Physo128885;rank=2 scaffold_6 . exon 206927 207028 . + . ID=Physo128885.2;Parent=Physo128885;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 207085 207495 . + 0 ID=Physo128885;Parent=Physo128885;rank=3 scaffold_6 . exon 207085 207495 . + . ID=Physo128885.3;Parent=Physo128885;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 207518 207940 . + 0 ID=Physo128885;Parent=Physo128885;rank=4 scaffold_6 . exon 207518 207940 . + . ID=Physo128885.4;Parent=Physo128885;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 208151 208556 . + 0 ID=Physo128885;Parent=Physo128885;rank=5 scaffold_6 . exon 208151 208556 . + . ID=Physo128885.5;Parent=Physo128885;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . CDS 208622 208720 . + 0 ID=Physo128885;Parent=Physo128885;rank=6 scaffold_6 . CDS 208811 209897 . + 0 ID=Physo128885;Parent=Physo128885;rank=7 scaffold_6 . biological_region 213328 213333 0.999 + . logic_name=eponine scaffold_6 . repeat_region 216747 216781 . ? . description=dust scaffold_6 . repeat_region 217236 217245 . ? . description=dust scaffold_6 . biological_region 217265 217270 0.999 + . logic_name=eponine scaffold_6 . exon 208622 208720 . + . ID=Physo128885.6;Parent=Physo128885;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_6 . exon 208811 209897 . + . ID=Physo128885.7;Parent=Physo128885;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 ensembl protein_coding_gene 211043 211867 . - . ID=Physo128886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60043;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 211043 211867 . - . ID=Physo128886;Parent=Physo128886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 211043 211867 . - 0 ID=Physo128886;Parent=Physo128886;rank=1 scaffold_6 . exon 211043 211867 . - . ID=Physo128886.1;Parent=Physo128886;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 214164 214868 . - . ID=Physo128887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60044;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 214164 214868 . - . ID=Physo128887;Parent=Physo128887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 214164 214868 . - 0 ID=Physo128887;Parent=Physo128887;rank=1 scaffold_6 . exon 214164 214868 . - . ID=Physo128887.1;Parent=Physo128887;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 221425 222328 . - . ID=Physo128888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60045;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 221425 222328 . - . ID=Physo128888;Parent=Physo128888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 221425 222021 . - 0 ID=Physo128888;Parent=Physo128888;rank=2 scaffold_6 . exon 221425 222021 . - . ID=Physo128888.2;Parent=Physo128888;constitutive=1;rank=2 scaffold_6 . CDS 222071 222328 . - 0 ID=Physo128888;Parent=Physo128888;rank=1 scaffold_6 . exon 222071 222328 . - . ID=Physo128888.1;Parent=Physo128888;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 225126 227162 . + . ID=Physo128889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60046;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 225126 227162 . + . ID=Physo128889;Parent=Physo128889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 225126 227162 . + 0 ID=Physo128889;Parent=Physo128889;rank=1 scaffold_6 . exon 225126 227162 . + . ID=Physo128889.1;Parent=Physo128889;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 227271 228101 . - . ID=Physo128890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60047;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 227271 228101 . - . ID=Physo128890;Parent=Physo128890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 227271 228101 . - 0 ID=Physo128890;Parent=Physo128890;rank=1 scaffold_6 . exon 227271 228101 . - . ID=Physo128890.1;Parent=Physo128890;constitutive=1;rank=1 scaffold_6 . repeat_region 228503 228552 . ? . description=dust scaffold_6 . repeat_region 228748 228772 . ? . description=dust scaffold_6 . repeat_region 228748 228772 . ? . description=trf scaffold_6 . biological_region 229042 229045 0.999 + . logic_name=eponine scaffold_6 . repeat_region 233300 233307 . ? . description=dust scaffold_6 ensembl protein_coding_gene 228981 233850 . + . ID=Physo128891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60048;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 228981 233850 . + . ID=Physo128891;Parent=Physo128891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 228981 229140 . + 0 ID=Physo128891;Parent=Physo128891;rank=1 scaffold_6 . exon 228981 229140 . + . ID=Physo128891.1;Parent=Physo128891;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 229224 230375 . + 0 ID=Physo128891;Parent=Physo128891;rank=2 scaffold_6 . exon 229224 230375 . + . ID=Physo128891.2;Parent=Physo128891;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 230587 232798 . + 0 ID=Physo128891;Parent=Physo128891;rank=3 scaffold_6 . exon 230587 232798 . + . ID=Physo128891.3;Parent=Physo128891;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_6 . CDS 233069 233297 . + 0 ID=Physo128891;Parent=Physo128891;rank=4 scaffold_6 . exon 233069 233297 . + . ID=Physo128891.4;Parent=Physo128891;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 233326 233606 . + 0 ID=Physo128891;Parent=Physo128891;rank=5 scaffold_6 . exon 233326 233606 . + . ID=Physo128891.5;Parent=Physo128891;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 233829 233850 . + 0 ID=Physo128891;Parent=Physo128891;rank=6 scaffold_6 . exon 233829 233850 . + . ID=Physo128891.6;Parent=Physo128891;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 ensembl protein_coding_gene 236272 237200 . + . ID=Physo128892;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60049;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 236272 237200 . + . ID=Physo128892;Parent=Physo128892;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 236272 236360 . + 0 ID=Physo128892;Parent=Physo128892;rank=1 scaffold_6 . exon 236272 236360 . + . ID=Physo128892.1;Parent=Physo128892;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 236381 236502 . + 0 ID=Physo128892;Parent=Physo128892;rank=2 scaffold_6 . exon 236381 236502 . + . ID=Physo128892.2;Parent=Physo128892;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 236593 237200 . + 0 ID=Physo128892;Parent=Physo128892;rank=3 scaffold_6 . exon 236593 237200 . + . ID=Physo128892.3;Parent=Physo128892;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 ensembl protein_coding_gene 243473 247124 . - . ID=Physo128893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60050;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 243473 247124 . - . ID=Physo128893;Parent=Physo128893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 243473 243654 . - 0 ID=Physo128893;Parent=Physo128893;rank=7 scaffold_6 . exon 243473 243654 . - . ID=Physo128893.7;Parent=Physo128893;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 243736 244493 . - 0 ID=Physo128893;Parent=Physo128893;rank=6 scaffold_6 . exon 243736 244493 . - . ID=Physo128893.6;Parent=Physo128893;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 244570 244880 . - 0 ID=Physo128893;Parent=Physo128893;rank=5 scaffold_6 . exon 244570 244880 . - . ID=Physo128893.5;Parent=Physo128893;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 244947 245483 . - 0 ID=Physo128893;Parent=Physo128893;rank=4 scaffold_6 . exon 244947 245483 . - . ID=Physo128893.4;Parent=Physo128893;constitutive=1;rank=4 scaffold_6 . CDS 245516 246377 . - 0 ID=Physo128893;Parent=Physo128893;rank=3 scaffold_6 . exon 245516 246377 . - . ID=Physo128893.3;Parent=Physo128893;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 246450 246991 . - 0 ID=Physo128893;Parent=Physo128893;rank=2 scaffold_6 . exon 246450 246991 . - . ID=Physo128893.2;Parent=Physo128893;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 247071 247124 . - 0 ID=Physo128893;Parent=Physo128893;rank=1 scaffold_6 . exon 247071 247124 . - . ID=Physo128893.1;Parent=Physo128893;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 247337 251499 . + . ID=Physo128894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60051;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 247337 251499 . + . ID=Physo128894;Parent=Physo128894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 247337 247810 . + 0 ID=Physo128894;Parent=Physo128894;rank=1 scaffold_6 . exon 247337 247810 . + . ID=Physo128894.1;Parent=Physo128894;constitutive=1;rank=1 scaffold_6 . CDS 247864 248938 . + 0 ID=Physo128894;Parent=Physo128894;rank=2 scaffold_6 . exon 247864 248938 . + . ID=Physo128894.2;Parent=Physo128894;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 249113 251499 . + 0 ID=Physo128894;Parent=Physo128894;rank=3 scaffold_6 . biological_region 249259 249261 0.999 - . logic_name=eponine scaffold_6 . biological_region 250161 250163 0.999 + . logic_name=eponine scaffold_6 . repeat_region 250419 250456 . ? . description=trf scaffold_6 . repeat_region 250419 250464 . ? . description=dust scaffold_6 . repeat_region 250423 250464 . ? . description=trf scaffold_6 . biological_region 252324 252327 0.999 - . logic_name=eponine scaffold_6 . biological_region 252430 252430 0.999 + . logic_name=eponine scaffold_6 . biological_region 252597 252600 0.999 - . logic_name=eponine scaffold_6 . biological_region 253191 253200 0.999 - . logic_name=eponine scaffold_6 . biological_region 253252 253254 0.999 + . logic_name=eponine scaffold_6 . repeat_region 253370 253383 . ? . description=dust scaffold_6 . biological_region 253580 253581 0.999 - . logic_name=eponine scaffold_6 . biological_region 254134 254141 0.999 - . logic_name=eponine scaffold_6 . biological_region 254148 254149 0.999 + . logic_name=eponine scaffold_6 . biological_region 254190 254197 0.999 + . logic_name=eponine scaffold_6 . biological_region 254216 254218 0.999 + . logic_name=eponine scaffold_6 . biological_region 254254 254256 0.999 - . logic_name=eponine scaffold_6 . biological_region 254427 254430 0.999 - . logic_name=eponine scaffold_6 . biological_region 254519 254521 0.999 + . logic_name=eponine scaffold_6 . repeat_region 254734 254777 . ? . description=dust scaffold_6 . exon 249113 251499 . + . ID=Physo128894.3;Parent=Physo128894;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 ensembl protein_coding_gene 251845 252561 . - . ID=Physo128895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60052;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 251845 252561 . - . ID=Physo128895;Parent=Physo128895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 251845 252561 . - 0 ID=Physo128895;Parent=Physo128895;rank=1 scaffold_6 . exon 251845 252561 . - . ID=Physo128895.1;Parent=Physo128895;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 254010 256250 . + . ID=Physo128896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60053;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 254010 256250 . + . ID=Physo128896;Parent=Physo128896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 254010 256250 . + 0 ID=Physo128896;Parent=Physo128896;rank=1 scaffold_6 . exon 254010 256250 . + . ID=Physo128896.1;Parent=Physo128896;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 257230 259851 . + . ID=Physo128897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60054;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 257230 259851 . + . ID=Physo128897;Parent=Physo128897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 257230 259851 . + 0 ID=Physo128897;Parent=Physo128897;rank=1 scaffold_6 . exon 257230 259851 . + . ID=Physo128897.1;Parent=Physo128897;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 264936 265811 . - . ID=Physo108312;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60002;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 264936 265811 . - . ID=Physo108312;Parent=Physo108312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 264936 265051 . - 0 ID=Physo108312;Parent=Physo108312;rank=4 scaffold_6 . exon 264936 265051 . - . ID=Physo108312.4;Parent=Physo108312;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 265122 265175 . - 0 ID=Physo108312;Parent=Physo108312;rank=3 scaffold_6 . exon 265122 265175 . - . ID=Physo108312.3;Parent=Physo108312;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 265255 265642 . - 0 ID=Physo108312;Parent=Physo108312;rank=2 scaffold_6 . exon 265255 265642 . - . ID=Physo108312.2;Parent=Physo108312;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 265722 265811 . - 0 ID=Physo108312;Parent=Physo108312;rank=1 scaffold_6 . exon 265722 265811 . - . ID=Physo108312.1;Parent=Physo108312;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 267940 279219 . + . ID=Physo111756;biotype=protein_coding;external_name=estExt_Genewise1.C_60348;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 267940 279219 . + . ID=Physo111756;Parent=Physo111756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 267940 268702 . + . ID=Physo111756.1;Parent=Physo111756;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 267994 268702 . + 0 ID=Physo111756;Parent=Physo111756;rank=1 scaffold_6 . CDS 268793 269872 . + 0 ID=Physo111756;Parent=Physo111756;rank=2 scaffold_6 . CDS 269981 270279 . + 0 ID=Physo111756;Parent=Physo111756;rank=3 scaffold_6 . CDS 270535 271372 . + 0 ID=Physo111756;Parent=Physo111756;rank=4 scaffold_6 . CDS 271529 279219 . + 0 ID=Physo111756;Parent=Physo111756;rank=5 scaffold_6 ensembl protein_coding_gene 260524 262082 . - . ID=Physo128898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60055;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 260524 262082 . - . ID=Physo128898;Parent=Physo128898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 260524 262082 . - . ID=Physo128898.1;Parent=Physo128898;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . CDS 260634 262082 . - 0 ID=Physo128898;Parent=Physo128898;rank=1 scaffold_6 ensembl protein_coding_gene 263167 264790 . + . ID=Physo128899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60056;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 263167 264790 . + . ID=Physo128899;Parent=Physo128899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 263167 264081 . + 0 ID=Physo128899;Parent=Physo128899;rank=1 scaffold_6 . exon 263167 264081 . + . ID=Physo128899.1;Parent=Physo128899;constitutive=1;rank=1 scaffold_6 . CDS 264149 264425 . + 0 ID=Physo128899;Parent=Physo128899;rank=2 scaffold_6 . exon 264149 264425 . + . ID=Physo128899.2;Parent=Physo128899;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 264504 264790 . + 0 ID=Physo128899;Parent=Physo128899;rank=3 scaffold_6 . exon 264504 264790 . + . ID=Physo128899.3;Parent=Physo128899;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . biological_region 270713 270716 0.999 - . logic_name=eponine scaffold_6 . biological_region 273363 273365 0.999 - . logic_name=eponine scaffold_6 . biological_region 274968 274968 0.999 + . logic_name=eponine scaffold_6 . exon 268793 269872 . + . ID=Physo111756.2;Parent=Physo111756;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . exon 269981 270279 . + . ID=Physo111756.3;Parent=Physo111756;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . exon 270535 271372 . + . ID=Physo111756.4;Parent=Physo111756;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . exon 271529 279219 . + . ID=Physo111756.5;Parent=Physo111756;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . repeat_region 281192 281211 . ? . description=trf scaffold_6 . repeat_region 284990 284997 . ? . description=dust scaffold_6 ensembl protein_coding_gene 267940 279219 . + . ID=Physo111756;biotype=protein_coding;external_name=estExt_Genewise1.C_60348;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 267940 279219 . + . ID=Physo111756;Parent=Physo111756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 267994 268702 . + 0 ID=Physo111756;Parent=Physo111756;rank=1 scaffold_6 . CDS 268793 269872 . + 0 ID=Physo111756;Parent=Physo111756;rank=2 scaffold_6 . CDS 269981 270279 . + 0 ID=Physo111756;Parent=Physo111756;rank=3 scaffold_6 . CDS 270535 271372 . + 0 ID=Physo111756;Parent=Physo111756;rank=4 scaffold_6 . CDS 271529 279219 . + 0 ID=Physo111756;Parent=Physo111756;rank=5 scaffold_6 ensembl protein_coding_gene 279301 279735 . + . ID=Physo111758;biotype=protein_coding;external_name=estExt_Genewise1.C_60350;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 279301 279735 . + . ID=Physo111758;Parent=Physo111758;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 279301 279735 . + . ID=Physo111758.1;Parent=Physo111758;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 279364 279735 . + 0 ID=Physo111758;Parent=Physo111758;rank=1 scaffold_6 ensembl protein_coding_gene 279797 281325 . - . ID=Physo128903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60060;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 279797 281325 . - . ID=Physo128903;Parent=Physo128903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 279797 280453 . - . ID=Physo128903.4;Parent=Physo128903;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_6 . CDS 280111 280453 . - 0 ID=Physo128903;Parent=Physo128903;rank=3 scaffold_6 . CDS 280553 280657 . - 0 ID=Physo128903;Parent=Physo128903;rank=2 scaffold_6 . exon 280553 280657 . - . ID=Physo128903.3;Parent=Physo128903;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 280758 281056 . - 0 ID=Physo128903;Parent=Physo128903;rank=1 scaffold_6 . exon 280758 281083 . - . ID=Physo128903.2;Parent=Physo128903;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_6 . exon 281184 281325 . - . ID=Physo128903.1;Parent=Physo128903;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 282621 284963 . + . ID=Physo128904;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60061;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 282621 284963 . + . ID=Physo128904;Parent=Physo128904;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 282621 284963 . + 0 ID=Physo128904;Parent=Physo128904;rank=1 scaffold_6 . exon 282621 284963 . + . ID=Physo128904.1;Parent=Physo128904;constitutive=1;rank=1 scaffold_6 . biological_region 297165 297167 0.999 - . logic_name=eponine scaffold_6 . biological_region 297204 297206 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 294530 294745 . + . ID=Physo111409;biotype=protein_coding;external_name=estExt_Genewise1.C_60001;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 294530 294745 . + . ID=Physo111409;Parent=Physo111409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 294530 294745 . + 0 ID=Physo111409;Parent=Physo111409;rank=1 scaffold_6 . exon 294530 294745 . + . ID=Physo111409.1;Parent=Physo111409;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 297880 301734 . + . ID=Physo128905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60062;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 297880 301734 . + . ID=Physo128905;Parent=Physo128905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 297880 298102 . + 0 ID=Physo128905;Parent=Physo128905;rank=1 scaffold_6 . exon 297880 298102 . + . ID=Physo128905.1;Parent=Physo128905;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 298248 300697 . + 0 ID=Physo128905;Parent=Physo128905;rank=2 scaffold_6 . CDS 300766 301566 . + 0 ID=Physo128905;Parent=Physo128905;rank=3 scaffold_6 . repeat_region 298148 298208 . ? . description=trf scaffold_6 . repeat_region 305741 305801 . ? . description=trf scaffold_6 . exon 298248 300697 . + . ID=Physo128905.2;Parent=Physo128905;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . exon 300766 301734 . + . ID=Physo128905.3;Parent=Physo128905;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_6 ensembl protein_coding_gene 301975 302784 . - . ID=Physo128906;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60063;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 301975 302784 . - . ID=Physo128906;Parent=Physo128906;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 301975 302784 . - 0 ID=Physo128906;Parent=Physo128906;rank=1 scaffold_6 . exon 301975 302784 . - . ID=Physo128906.1;Parent=Physo128906;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 305433 307325 . + . ID=Physo128908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60065;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 305433 307325 . + . ID=Physo128908;Parent=Physo128908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 305433 306133 . + 0 ID=Physo128908;Parent=Physo128908;rank=1 scaffold_6 . exon 305433 306133 . + . ID=Physo128908.1;Parent=Physo128908;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 306207 306327 . + 0 ID=Physo128908;Parent=Physo128908;rank=2 scaffold_6 . exon 306207 306327 . + . ID=Physo128908.2;Parent=Physo128908;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 306417 307325 . + 0 ID=Physo128908;Parent=Physo128908;rank=3 scaffold_6 . exon 306417 307325 . + . ID=Physo128908.3;Parent=Physo128908;constitutive=1;rank=3 scaffold_6 . biological_region 309548 309555 0.999 - . logic_name=eponine scaffold_6 . biological_region 309741 309742 0.999 + . logic_name=eponine scaffold_6 . biological_region 309851 309853 0.999 - . logic_name=eponine scaffold_6 . biological_region 309905 309908 0.999 + . logic_name=eponine scaffold_6 . biological_region 310209 310213 0.999 - . logic_name=eponine scaffold_6 . biological_region 314481 314483 0.999 - . logic_name=eponine scaffold_6 . biological_region 316752 316754 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 308358 309053 . - . ID=Physo128909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60066;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 308358 309053 . - . ID=Physo128909;Parent=Physo128909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 308358 309053 . - . ID=Physo128909.1;Parent=Physo128909;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 308484 308951 . - 0 ID=Physo128909;Parent=Physo128909;rank=1 scaffold_6 ensembl protein_coding_gene 311477 312345 . - . ID=Physo128910;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60067;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 311477 312345 . - . ID=Physo128910;Parent=Physo128910;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 311477 311658 . - 0 ID=Physo128910;Parent=Physo128910;rank=4 scaffold_6 . exon 311477 311658 . - . ID=Physo128910.4;Parent=Physo128910;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 311745 311928 . - 0 ID=Physo128910;Parent=Physo128910;rank=3 scaffold_6 . exon 311745 311928 . - . ID=Physo128910.3;Parent=Physo128910;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 312010 312175 . - 0 ID=Physo128910;Parent=Physo128910;rank=2 scaffold_6 . exon 312010 312175 . - . ID=Physo128910.2;Parent=Physo128910;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 312257 312345 . - 0 ID=Physo128910;Parent=Physo128910;rank=1 scaffold_6 . exon 312257 312345 . - . ID=Physo128910.1;Parent=Physo128910;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 312473 314125 . + . ID=Physo128911;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60068;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 312473 314125 . + . ID=Physo128911;Parent=Physo128911;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 312473 313292 . + 0 ID=Physo128911;Parent=Physo128911;rank=1 scaffold_6 . exon 312473 313292 . + . ID=Physo128911.1;Parent=Physo128911;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 313605 314125 . + 0 ID=Physo128911;Parent=Physo128911;rank=2 scaffold_6 . exon 313605 314125 . + . ID=Physo128911.2;Parent=Physo128911;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 315042 316848 . - . ID=Physo128912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60069;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 315042 316848 . - . ID=Physo128912;Parent=Physo128912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 315042 315152 . - 0 ID=Physo128912;Parent=Physo128912;rank=9 scaffold_6 . exon 315042 315152 . - . ID=Physo128912.9;Parent=Physo128912;constitutive=1;rank=9 scaffold_6 . CDS 315231 315299 . - 0 ID=Physo128912;Parent=Physo128912;rank=8 scaffold_6 . exon 315231 315299 . - . ID=Physo128912.8;Parent=Physo128912;constitutive=1;rank=8 scaffold_6 . CDS 315372 315462 . - 0 ID=Physo128912;Parent=Physo128912;rank=7 scaffold_6 . exon 315372 315462 . - . ID=Physo128912.7;Parent=Physo128912;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 . CDS 315537 315697 . - 0 ID=Physo128912;Parent=Physo128912;rank=6 scaffold_6 . exon 315537 315697 . - . ID=Physo128912.6;Parent=Physo128912;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_6 . CDS 315770 315840 . - 0 ID=Physo128912;Parent=Physo128912;rank=5 scaffold_6 . exon 315770 315840 . - . ID=Physo128912.5;Parent=Physo128912;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 315922 316018 . - 0 ID=Physo128912;Parent=Physo128912;rank=4 scaffold_6 . exon 315922 316018 . - . ID=Physo128912.4;Parent=Physo128912;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 316095 316287 . - 0 ID=Physo128912;Parent=Physo128912;rank=3 scaffold_6 . exon 316095 316287 . - . ID=Physo128912.3;Parent=Physo128912;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 316364 316524 . - 0 ID=Physo128912;Parent=Physo128912;rank=2 scaffold_6 . exon 316364 316524 . - . ID=Physo128912.2;Parent=Physo128912;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 316588 316848 . - 0 ID=Physo128912;Parent=Physo128912;rank=1 scaffold_6 . exon 316588 316848 . - . ID=Physo128912.1;Parent=Physo128912;constitutive=1;rank=1 scaffold_6 . repeat_region 322541 322593 . ? . description=trf scaffold_6 . repeat_region 322549 322601 . ? . description=trf scaffold_6 . repeat_region 322549 322601 . ? . description=trf scaffold_6 . repeat_region 322561 322635 . ? . description=trf scaffold_6 . repeat_region 323050 323057 . ? . description=dust scaffold_6 ensembl protein_coding_gene 323885 324325 . - . ID=Physo108314;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60004;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 323885 324325 . - . ID=Physo108314;Parent=Physo108314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 323885 323932 . - 0 ID=Physo108314;Parent=Physo108314;rank=3 scaffold_6 . exon 323885 323932 . - . ID=Physo108314.3;Parent=Physo108314;constitutive=1;rank=3 scaffold_6 . CDS 323990 323990 . - 0 ID=Physo108314;Parent=Physo108314;rank=2 scaffold_6 . exon 323990 323990 . - . ID=Physo108314.2;Parent=Physo108314;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 324072 324325 . - 0 ID=Physo108314;Parent=Physo108314;rank=1 scaffold_6 . exon 324072 324325 . - . ID=Physo108314.1;Parent=Physo108314;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 317918 319084 . - . ID=Physo128913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60070;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 317918 319084 . - . ID=Physo128913;Parent=Physo128913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 317918 319084 . - 0 ID=Physo128913;Parent=Physo128913;rank=1 scaffold_6 . exon 317918 319084 . - . ID=Physo128913.1;Parent=Physo128913;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 319350 321778 . + . ID=Physo128914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60071;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 319350 321778 . + . ID=Physo128914;Parent=Physo128914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 319350 319410 . + 0 ID=Physo128914;Parent=Physo128914;rank=1 scaffold_6 . exon 319350 319410 . + . ID=Physo128914.1;Parent=Physo128914;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 319505 319612 . + 0 ID=Physo128914;Parent=Physo128914;rank=2 scaffold_6 . exon 319505 319612 . + . ID=Physo128914.2;Parent=Physo128914;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 319702 319796 . + 0 ID=Physo128914;Parent=Physo128914;rank=3 scaffold_6 . exon 319702 319796 . + . ID=Physo128914.3;Parent=Physo128914;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 319855 319951 . + 0 ID=Physo128914;Parent=Physo128914;rank=4 scaffold_6 . exon 319855 319951 . + . ID=Physo128914.4;Parent=Physo128914;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 320105 320266 . + 0 ID=Physo128914;Parent=Physo128914;rank=5 scaffold_6 . exon 320105 320266 . + . ID=Physo128914.5;Parent=Physo128914;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 320336 320611 . + 0 ID=Physo128914;Parent=Physo128914;rank=6 scaffold_6 . exon 320336 320611 . + . ID=Physo128914.6;Parent=Physo128914;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 320834 320918 . + 0 ID=Physo128914;Parent=Physo128914;rank=7 scaffold_6 . exon 320834 320918 . + . ID=Physo128914.7;Parent=Physo128914;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_6 . CDS 320986 321022 . + 0 ID=Physo128914;Parent=Physo128914;rank=8 scaffold_6 . exon 320986 321022 . + . ID=Physo128914.8;Parent=Physo128914;constitutive=1;ensembl_phase=2;rank=8 scaffold_6 . CDS 321157 321219 . + 0 ID=Physo128914;Parent=Physo128914;rank=9 scaffold_6 . exon 321157 321219 . + . ID=Physo128914.9;Parent=Physo128914;constitutive=1;rank=9 scaffold_6 . CDS 321284 321319 . + 0 ID=Physo128914;Parent=Physo128914;rank=10 scaffold_6 . exon 321284 321319 . + . ID=Physo128914.10;Parent=Physo128914;constitutive=1;rank=10 scaffold_6 . CDS 321377 321709 . + 0 ID=Physo128914;Parent=Physo128914;rank=11 scaffold_6 . exon 321377 321709 . + . ID=Physo128914.11;Parent=Physo128914;constitutive=1;rank=11 scaffold_6 . CDS 321755 321778 . + 0 ID=Physo128914;Parent=Physo128914;rank=12 scaffold_6 . exon 321755 321778 . + . ID=Physo128914.12;Parent=Physo128914;constitutive=1;rank=12 scaffold_6 ensembl protein_coding_gene 324637 326304 . + . ID=Physo128916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60073;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 324637 326304 . + . ID=Physo128916;Parent=Physo128916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 324637 324676 . + 0 ID=Physo128916;Parent=Physo128916;rank=1 scaffold_6 . exon 324637 324676 . + . ID=Physo128916.1;Parent=Physo128916;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 325023 325071 . + 0 ID=Physo128916;Parent=Physo128916;rank=2 scaffold_6 . exon 325023 325071 . + . ID=Physo128916.2;Parent=Physo128916;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 325295 326237 . + 0 ID=Physo128916;Parent=Physo128916;rank=3 scaffold_6 . exon 325295 326304 . + . ID=Physo128916.3;Parent=Physo128916;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_6 ensembl protein_coding_gene 326520 327358 . - . ID=Physo128917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60074;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 326520 327358 . - . ID=Physo128917;Parent=Physo128917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 326520 326525 . - 0 ID=Physo128917;Parent=Physo128917;rank=3 scaffold_6 . exon 326520 326525 . - . ID=Physo128917.3;Parent=Physo128917;constitutive=1;rank=3 scaffold_6 . CDS 326617 327165 . - 0 ID=Physo128917;Parent=Physo128917;rank=2 scaffold_6 . exon 326617 327165 . - . ID=Physo128917.2;Parent=Physo128917;constitutive=1;rank=2 scaffold_6 . CDS 327191 327358 . - 0 ID=Physo128917;Parent=Physo128917;rank=1 scaffold_6 . exon 327191 327358 . - . ID=Physo128917.1;Parent=Physo128917;constitutive=1;rank=1 scaffold_6 . biological_region 327803 327807 0.999 - . logic_name=eponine scaffold_6 . biological_region 327844 327847 0.999 + . logic_name=eponine scaffold_6 . biological_region 327879 327881 0.999 - . logic_name=eponine scaffold_6 . biological_region 327936 327941 0.999 + . logic_name=eponine scaffold_6 . biological_region 327995 328001 0.999 - . logic_name=eponine scaffold_6 . biological_region 328177 328181 0.999 + . logic_name=eponine scaffold_6 . biological_region 328281 328285 0.999 + . logic_name=eponine scaffold_6 . biological_region 329388 329388 0.999 - . logic_name=eponine scaffold_6 . biological_region 329989 329998 0.999 - . logic_name=eponine scaffold_6 . biological_region 333908 333909 0.999 - . logic_name=eponine scaffold_6 . biological_region 336986 336990 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 328927 329625 . + . ID=Physo128918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60075;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 328927 329625 . + . ID=Physo128918;Parent=Physo128918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 328927 329625 . + 0 ID=Physo128918;Parent=Physo128918;rank=1 scaffold_6 . exon 328927 329625 . + . ID=Physo128918.1;Parent=Physo128918;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 333757 334551 . + . ID=Physo128919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60076;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 333757 334551 . + . ID=Physo128919;Parent=Physo128919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 333757 334551 . + 0 ID=Physo128919;Parent=Physo128919;rank=1 scaffold_6 . exon 333757 334551 . + . ID=Physo128919.1;Parent=Physo128919;constitutive=1;rank=1 scaffold_6 . repeat_region 340393 340437 . ? . description=trf scaffold_6 ensembl protein_coding_gene 337663 338361 . - . ID=Physo128920;biotype=protein_coding;description=Putative zinc finger protein 2 [Source:UniProtKB/TrEMBL%3BAcc:B5M4V1];external_name=estExt_fgenesh1_pg.C_60077;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 337663 338361 . - . ID=Physo128920;Parent=Physo128920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 337663 338361 . - 0 ID=Physo128920;Parent=Physo128920;rank=1 scaffold_6 . exon 337663 338361 . - . ID=Physo128920.1;Parent=Physo128920;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 339390 339977 . - . ID=Physo128921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60078;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 339390 339977 . - . ID=Physo128921;Parent=Physo128921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 339390 339977 . - 0 ID=Physo128921;Parent=Physo128921;rank=1 scaffold_6 . exon 339390 339977 . - . ID=Physo128921.1;Parent=Physo128921;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 341041 344219 . + . ID=Physo128922;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60079;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 341041 344219 . + . ID=Physo128922;Parent=Physo128922;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 341041 341073 . + 0 ID=Physo128922;Parent=Physo128922;rank=1 scaffold_6 . exon 341041 341073 . + . ID=Physo128922.1;Parent=Physo128922;constitutive=1;rank=1 scaffold_6 . CDS 341150 341431 . + 0 ID=Physo128922;Parent=Physo128922;rank=2 scaffold_6 . exon 341150 341431 . + . ID=Physo128922.2;Parent=Physo128922;constitutive=1;rank=2 scaffold_6 . CDS 341499 344219 . + 0 ID=Physo128922;Parent=Physo128922;rank=3 scaffold_6 . exon 341499 344219 . + . ID=Physo128922.3;Parent=Physo128922;constitutive=1;rank=3 scaffold_6 ensembl protein_coding_gene 344359 346596 . - . ID=Physo128923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60080;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 344359 346596 . - . ID=Physo128923;Parent=Physo128923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 344359 346596 . - 0 ID=Physo128923;Parent=Physo128923;rank=1 scaffold_6 . exon 344359 346596 . - . ID=Physo128923.1;Parent=Physo128923;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 346866 350828 . + . ID=Physo128924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60081;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 346866 350828 . + . ID=Physo128924;Parent=Physo128924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 346866 350828 . + 0 ID=Physo128924;Parent=Physo128924;rank=1 scaffold_6 . exon 346866 350828 . + . ID=Physo128924.1;Parent=Physo128924;constitutive=1;rank=1 scaffold_6 . biological_region 349261 349264 0.999 + . logic_name=eponine scaffold_6 . biological_region 350079 350083 0.999 + . logic_name=eponine scaffold_6 . biological_region 354063 354065 0.999 + . logic_name=eponine scaffold_6 . biological_region 354100 354103 0.999 - . logic_name=eponine scaffold_6 . biological_region 354218 354221 0.999 - . logic_name=eponine scaffold_6 . biological_region 354416 354421 0.999 - . logic_name=eponine scaffold_6 . biological_region 354872 354872 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 356920 358602 . + . ID=Physo111443;biotype=protein_coding;external_name=estExt_Genewise1.C_60035;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 356920 358602 . + . ID=Physo111443;Parent=Physo111443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 356920 358602 . + . ID=Physo111443.1;Parent=Physo111443;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 356983 358602 . + 0 ID=Physo111443;Parent=Physo111443;rank=1 scaffold_6 ensembl protein_coding_gene 351029 352045 . + . ID=Physo128925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60082;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 351029 352045 . + . ID=Physo128925;Parent=Physo128925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 351029 351047 . + . ID=Physo128925.1;Parent=Physo128925;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . exon 351225 351275 . + . ID=Physo128925.2;Parent=Physo128925;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_6 . CDS 351245 351275 . + 0 ID=Physo128925;Parent=Physo128925;rank=1 scaffold_6 . CDS 351381 351520 . + 0 ID=Physo128925;Parent=Physo128925;rank=2 scaffold_6 . exon 351381 351520 . + . ID=Physo128925.3;Parent=Physo128925;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 351610 351876 . + 0 ID=Physo128925;Parent=Physo128925;rank=3 scaffold_6 . exon 351610 352045 . + . ID=Physo128925.4;Parent=Physo128925;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_6 ensembl protein_coding_gene 352147 353637 . - . ID=Physo128926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60083;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 352147 353637 . - . ID=Physo128926;Parent=Physo128926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 352147 353637 . - 0 ID=Physo128926;Parent=Physo128926;rank=1 scaffold_6 . exon 352147 353637 . - . ID=Physo128926.1;Parent=Physo128926;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 353912 354669 . + . ID=Physo128927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60084;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 353912 354669 . + . ID=Physo128927;Parent=Physo128927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 353912 354669 . + . ID=Physo128927.1;Parent=Physo128927;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 353926 354669 . + 0 ID=Physo128927;Parent=Physo128927;rank=1 scaffold_6 ensembl protein_coding_gene 354896 355573 . - . ID=Physo128928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60085;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 354896 355573 . - . ID=Physo128928;Parent=Physo128928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 354896 355573 . - 0 ID=Physo128928;Parent=Physo128928;rank=1 scaffold_6 . exon 354896 355573 . - . ID=Physo128928.1;Parent=Physo128928;constitutive=1;rank=1 scaffold_6 . repeat_region 361122 361143 . ? . description=trf scaffold_6 . repeat_region 364030 364037 . ? . description=dust scaffold_6 . biological_region 370894 370896 0.999 + . logic_name=eponine scaffold_6 . biological_region 375111 375115 0.999 - . logic_name=eponine scaffold_6 . biological_region 375984 375989 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 371587 373702 . + . ID=Physo111448;biotype=protein_coding;external_name=estExt_Genewise1.C_60040;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 371587 373702 . + . ID=Physo111448;Parent=Physo111448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 371587 372414 . + . ID=Physo111448.1;Parent=Physo111448;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 371596 372414 . + 0 ID=Physo111448;Parent=Physo111448;rank=1 scaffold_6 . CDS 372667 372745 . + 0 ID=Physo111448;Parent=Physo111448;rank=2 scaffold_6 . exon 372667 372745 . + . ID=Physo111448.2;Parent=Physo111448;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 372803 373494 . + 0 ID=Physo111448;Parent=Physo111448;rank=3 scaffold_6 . exon 372803 373494 . + . ID=Physo111448.3;Parent=Physo111448;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 373556 373702 . + 0 ID=Physo111448;Parent=Physo111448;rank=4 scaffold_6 . exon 373556 373702 . + . ID=Physo111448.4;Parent=Physo111448;constitutive=1;rank=4 scaffold_6 ensembl protein_coding_gene 373850 374608 . - . ID=Physo128930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60087;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 373850 374608 . - . ID=Physo128930;Parent=Physo128930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 373850 374608 . - 0 ID=Physo128930;Parent=Physo128930;rank=1 scaffold_6 . exon 373850 374608 . - . ID=Physo128930.1;Parent=Physo128930;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 375804 378542 . + . ID=Physo128931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60088;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 375804 378542 . + . ID=Physo128931;Parent=Physo128931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 375804 376052 . + . ID=Physo128931.1;Parent=Physo128931;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 375882 376052 . + 0 ID=Physo128931;Parent=Physo128931;rank=1 scaffold_6 . CDS 376131 376265 . + 0 ID=Physo128931;Parent=Physo128931;rank=2 scaffold_6 . exon 376131 376265 . + . ID=Physo128931.2;Parent=Physo128931;constitutive=1;rank=2 scaffold_6 . CDS 376339 376419 . + 0 ID=Physo128931;Parent=Physo128931;rank=3 scaffold_6 . exon 376339 376419 . + . ID=Physo128931.3;Parent=Physo128931;constitutive=1;rank=3 scaffold_6 . CDS 376468 376739 . + 0 ID=Physo128931;Parent=Physo128931;rank=4 scaffold_6 . exon 376468 376739 . + . ID=Physo128931.4;Parent=Physo128931;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 376831 376906 . + 0 ID=Physo128931;Parent=Physo128931;rank=5 scaffold_6 . exon 376831 376906 . + . ID=Physo128931.5;Parent=Physo128931;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 376982 377051 . + 0 ID=Physo128931;Parent=Physo128931;rank=6 scaffold_6 . exon 376982 377051 . + . ID=Physo128931.6;Parent=Physo128931;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_6 . CDS 377257 377325 . + 0 ID=Physo128931;Parent=Physo128931;rank=7 scaffold_6 . exon 377257 377325 . + . ID=Physo128931.7;Parent=Physo128931;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 377456 377469 . + 0 ID=Physo128931;Parent=Physo128931;rank=8 scaffold_6 . CDS 377699 377777 . + 0 ID=Physo128931;Parent=Physo128931;rank=9 scaffold_6 . CDS 377876 378012 . + 0 ID=Physo128931;Parent=Physo128931;rank=10 scaffold_6 . repeat_region 383472 383591 . ? . description=trf scaffold_6 . repeat_region 383498 383591 . ? . description=dust scaffold_6 . repeat_region 383513 383546 . ? . description=trf scaffold_6 . exon 377456 377469 . + . ID=Physo128931.8;Parent=Physo128931;constitutive=1;ensembl_phase=1;rank=8 scaffold_6 . exon 377699 377777 . + . ID=Physo128931.9;Parent=Physo128931;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_6 . exon 377876 378013 . + . ID=Physo128931.10;Parent=Physo128931;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=10 scaffold_6 . exon 378088 378270 . + . ID=Physo128931.11;Parent=Physo128931;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=11 scaffold_6 . exon 378344 378542 . + . ID=Physo128931.12;Parent=Physo128931;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=12 scaffold_6 ensembl protein_coding_gene 378639 379334 . - . ID=Physo128932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60089;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 378639 379334 . - . ID=Physo128932;Parent=Physo128932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 378639 378780 . - . ID=Physo128932.3;Parent=Physo128932;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_6 . CDS 378645 378780 . - 0 ID=Physo128932;Parent=Physo128932;rank=3 scaffold_6 . CDS 378859 378953 . - 0 ID=Physo128932;Parent=Physo128932;rank=2 scaffold_6 . exon 378859 378953 . - . ID=Physo128932.2;Parent=Physo128932;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 379030 379320 . - 0 ID=Physo128932;Parent=Physo128932;rank=1 scaffold_6 . exon 379030 379334 . - . ID=Physo128932.1;Parent=Physo128932;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 381474 382629 . - . ID=Physo128933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60090;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 381474 382629 . - . ID=Physo128933;Parent=Physo128933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 381474 381672 . - 0 ID=Physo128933;Parent=Physo128933;rank=5 scaffold_6 . exon 381474 381672 . - . ID=Physo128933.5;Parent=Physo128933;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 381746 381862 . - 0 ID=Physo128933;Parent=Physo128933;rank=4 scaffold_6 . exon 381746 381862 . - . ID=Physo128933.4;Parent=Physo128933;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_6 . CDS 381946 382101 . - 0 ID=Physo128933;Parent=Physo128933;rank=3 scaffold_6 . exon 381946 382101 . - . ID=Physo128933.3;Parent=Physo128933;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 382198 382347 . - 0 ID=Physo128933;Parent=Physo128933;rank=2 scaffold_6 . exon 382198 382347 . - . ID=Physo128933.2;Parent=Physo128933;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 382457 382524 . - 0 ID=Physo128933;Parent=Physo128933;rank=1 scaffold_6 . exon 382457 382629 . - . ID=Physo128933.1;Parent=Physo128933;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 382839 383987 . - . ID=Physo128934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60091;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 382839 383987 . - . ID=Physo128934;Parent=Physo128934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 382839 383987 . - . ID=Physo128934.1;Parent=Physo128934;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 382914 383807 . - 0 ID=Physo128934;Parent=Physo128934;rank=1 scaffold_6 ensembl protein_coding_gene 384928 389200 . + . ID=Physo128935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60092;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 384928 389200 . + . ID=Physo128935;Parent=Physo128935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 384928 386397 . + 0 ID=Physo128935;Parent=Physo128935;rank=1 scaffold_6 . exon 384928 386397 . + . ID=Physo128935.1;Parent=Physo128935;constitutive=1;rank=1 scaffold_6 . CDS 386480 389086 . + 0 ID=Physo128935;Parent=Physo128935;rank=2 scaffold_6 . exon 386480 389200 . + . ID=Physo128935.2;Parent=Physo128935;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_6 . biological_region 388525 388525 0.999 - . logic_name=eponine scaffold_6 . biological_region 388950 388953 0.999 - . logic_name=eponine scaffold_6 . biological_region 390691 390694 0.999 + . logic_name=eponine scaffold_6 . biological_region 391557 391561 0.999 - . logic_name=eponine scaffold_6 . biological_region 392110 392111 0.999 + . logic_name=eponine scaffold_6 . biological_region 392157 392161 0.999 - . logic_name=eponine scaffold_6 . biological_region 393041 393041 0.999 - . logic_name=eponine scaffold_6 . biological_region 393842 393848 0.999 + . logic_name=eponine scaffold_6 . biological_region 393889 393897 0.999 + . logic_name=eponine scaffold_6 . biological_region 393979 393984 0.999 + . logic_name=eponine scaffold_6 . biological_region 394069 394073 0.999 - . logic_name=eponine scaffold_6 . biological_region 394125 394126 0.999 - . logic_name=eponine scaffold_6 . biological_region 394152 394155 0.999 - . logic_name=eponine scaffold_6 . biological_region 394176 394182 0.999 + . logic_name=eponine scaffold_6 . biological_region 394749 394755 0.999 + . logic_name=eponine scaffold_6 . biological_region 395166 395167 0.999 + . logic_name=eponine scaffold_6 . biological_region 395417 395419 0.999 + . logic_name=eponine scaffold_6 . biological_region 395572 395573 0.999 + . logic_name=eponine scaffold_6 . biological_region 395611 395614 0.999 + . logic_name=eponine scaffold_6 . biological_region 396502 396502 0.999 - . logic_name=eponine scaffold_6 . biological_region 396570 396570 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 389276 391542 . + . ID=Physo108316;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60006;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 389276 391542 . + . ID=Physo108316;Parent=Physo108316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 389276 389752 . + 0 ID=Physo108316;Parent=Physo108316;rank=1 scaffold_6 . exon 389276 389752 . + . ID=Physo108316.1;Parent=Physo108316;constitutive=1;rank=1 scaffold_6 . CDS 391030 391542 . + 0 ID=Physo108316;Parent=Physo108316;rank=2 scaffold_6 . exon 391030 391542 . + . ID=Physo108316.2;Parent=Physo108316;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 391817 394256 . + . ID=Physo108317;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60007;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 391817 394256 . + . ID=Physo108317;Parent=Physo108317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 391817 392298 . + 0 ID=Physo108317;Parent=Physo108317;rank=1 scaffold_6 . exon 391817 392298 . + . ID=Physo108317.1;Parent=Physo108317;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 392368 392656 . + 0 ID=Physo108317;Parent=Physo108317;rank=2 scaffold_6 . exon 392368 392656 . + . ID=Physo108317.2;Parent=Physo108317;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 392759 392844 . + 0 ID=Physo108317;Parent=Physo108317;rank=3 scaffold_6 . exon 392759 392844 . + . ID=Physo108317.3;Parent=Physo108317;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 392930 393055 . + 0 ID=Physo108317;Parent=Physo108317;rank=4 scaffold_6 . exon 392930 393055 . + . ID=Physo108317.4;Parent=Physo108317;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_6 . CDS 393289 393394 . + 0 ID=Physo108317;Parent=Physo108317;rank=5 scaffold_6 . exon 393289 393394 . + . ID=Physo108317.5;Parent=Physo108317;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 393554 393642 . + 0 ID=Physo108317;Parent=Physo108317;rank=6 scaffold_6 . exon 393554 393642 . + . ID=Physo108317.6;Parent=Physo108317;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_6 . CDS 393792 393954 . + 0 ID=Physo108317;Parent=Physo108317;rank=7 scaffold_6 . exon 393792 394256 . + . ID=Physo108317.7;Parent=Physo108317;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_6 ensembl protein_coding_gene 395360 397506 . + . ID=Physo128938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60095;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 395360 397506 . + . ID=Physo128938;Parent=Physo128938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 395360 397264 . + 0 ID=Physo128938;Parent=Physo128938;rank=1 scaffold_6 . exon 395360 397506 . + . ID=Physo128938.1;Parent=Physo128938;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . repeat_region 400834 400847 . ? . description=dust scaffold_6 ensembl protein_coding_gene 397625 398836 . - . ID=Physo128939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60096;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 397625 398836 . - . ID=Physo128939;Parent=Physo128939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 397625 398190 . - . ID=Physo128939.2;Parent=Physo128939;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_6 . CDS 398166 398190 . - 0 ID=Physo128939;Parent=Physo128939;rank=2 scaffold_6 . CDS 398262 398836 . - 0 ID=Physo128939;Parent=Physo128939;rank=1 scaffold_6 . exon 398262 398836 . - . ID=Physo128939.1;Parent=Physo128939;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 399798 400353 . + . ID=Physo128940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60097;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 399798 400353 . + . ID=Physo128940;Parent=Physo128940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 399798 399947 . + 0 ID=Physo128940;Parent=Physo128940;rank=1 scaffold_6 . exon 399798 399947 . + . ID=Physo128940.1;Parent=Physo128940;constitutive=1;rank=1 scaffold_6 . CDS 400021 400353 . + 0 ID=Physo128940;Parent=Physo128940;rank=2 scaffold_6 . exon 400021 400353 . + . ID=Physo128940.2;Parent=Physo128940;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 400475 401642 . - . ID=Physo128941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60098;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 400475 401642 . - . ID=Physo128941;Parent=Physo128941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 400475 400512 . - 0 ID=Physo128941;Parent=Physo128941;rank=3 scaffold_6 . exon 400475 400512 . - . ID=Physo128941.3;Parent=Physo128941;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 400603 400801 . - 0 ID=Physo128941;Parent=Physo128941;rank=2 scaffold_6 . exon 400603 400801 . - . ID=Physo128941.2;Parent=Physo128941;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 400899 401642 . - 0 ID=Physo128941;Parent=Physo128941;rank=1 scaffold_6 . exon 400899 401642 . - . ID=Physo128941.1;Parent=Physo128941;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 401832 403421 . + . ID=Physo128942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60099;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 401832 403421 . + . ID=Physo128942;Parent=Physo128942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 401832 403421 . + 0 ID=Physo128942;Parent=Physo128942;rank=1 scaffold_6 . exon 401832 403421 . + . ID=Physo128942.1;Parent=Physo128942;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 403627 404540 . - . ID=Physo128943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60100;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 403627 404540 . - . ID=Physo128943;Parent=Physo128943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 403627 403738 . - 0 ID=Physo128943;Parent=Physo128943;rank=4 scaffold_6 . exon 403627 403738 . - . ID=Physo128943.4;Parent=Physo128943;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 403836 403896 . - 0 ID=Physo128943;Parent=Physo128943;rank=3 scaffold_6 . exon 403836 403896 . - . ID=Physo128943.3;Parent=Physo128943;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_6 . CDS 403973 404124 . - 0 ID=Physo128943;Parent=Physo128943;rank=2 scaffold_6 . exon 403973 404124 . - . ID=Physo128943.2;Parent=Physo128943;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 404215 404540 . - 0 ID=Physo128943;Parent=Physo128943;rank=1 scaffold_6 . exon 404215 404540 . - . ID=Physo128943.1;Parent=Physo128943;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 405521 406088 . + . ID=Physo128944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60101;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 405521 406088 . + . ID=Physo128944;Parent=Physo128944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 405521 405991 . + 0 ID=Physo128944;Parent=Physo128944;rank=1 scaffold_6 . exon 405521 405991 . + . ID=Physo128944.1;Parent=Physo128944;constitutive=1;rank=1 scaffold_6 . CDS 406077 406088 . + 0 ID=Physo128944;Parent=Physo128944;rank=2 scaffold_6 . exon 406077 406088 . + . ID=Physo128944.2;Parent=Physo128944;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 406866 409136 . - . ID=Physo128945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60102;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 406866 409136 . - . ID=Physo128945;Parent=Physo128945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 406866 406954 . - 0 ID=Physo128945;Parent=Physo128945;rank=6 scaffold_6 . exon 406866 406954 . - . ID=Physo128945.6;Parent=Physo128945;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 407028 407628 . - 0 ID=Physo128945;Parent=Physo128945;rank=5 scaffold_6 . exon 407028 407628 . - . ID=Physo128945.5;Parent=Physo128945;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_6 . CDS 407693 407862 . - 0 ID=Physo128945;Parent=Physo128945;rank=4 scaffold_6 . CDS 407949 408531 . - 0 ID=Physo128945;Parent=Physo128945;rank=3 scaffold_6 . CDS 408606 408973 . - 0 ID=Physo128945;Parent=Physo128945;rank=2 scaffold_6 . CDS 409037 409136 . - 0 ID=Physo128945;Parent=Physo128945;rank=1 scaffold_6 . repeat_region 416691 416868 . + . description=(TCG)n scaffold_6 . repeat_region 416825 416870 . ? . description=trf scaffold_6 . repeat_region 416828 416870 . ? . description=trf scaffold_6 . repeat_region 416893 416916 . ? . description=trf scaffold_6 . repeat_region 416967 417011 . ? . description=trf scaffold_6 ensembl protein_coding_gene 409967 411310 . + . ID=Physo108318;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60008;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 409967 411310 . + . ID=Physo108318;Parent=Physo108318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 409967 411310 . + . ID=Physo108318.1;Parent=Physo108318;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 409982 411262 . + 0 ID=Physo108318;Parent=Physo108318;rank=1 scaffold_6 . exon 407693 407862 . - . ID=Physo128945.4;Parent=Physo128945;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . exon 407949 408531 . - . ID=Physo128945.3;Parent=Physo128945;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . exon 408606 408973 . - . ID=Physo128945.2;Parent=Physo128945;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . exon 409037 409136 . - . ID=Physo128945.1;Parent=Physo128945;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 412271 414708 . - . ID=Physo128947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60104;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 412271 414708 . - . ID=Physo128947;Parent=Physo128947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 412271 412792 . - 0 ID=Physo128947;Parent=Physo128947;rank=5 scaffold_6 . exon 412271 412792 . - . ID=Physo128947.5;Parent=Physo128947;constitutive=1;rank=5 scaffold_6 . CDS 412972 413373 . - 0 ID=Physo128947;Parent=Physo128947;rank=4 scaffold_6 . exon 412972 413373 . - . ID=Physo128947.4;Parent=Physo128947;constitutive=1;rank=4 scaffold_6 . CDS 413870 414033 . - 0 ID=Physo128947;Parent=Physo128947;rank=3 scaffold_6 . exon 413870 414033 . - . ID=Physo128947.3;Parent=Physo128947;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 414080 414275 . - 0 ID=Physo128947;Parent=Physo128947;rank=2 scaffold_6 . exon 414080 414275 . - . ID=Physo128947.2;Parent=Physo128947;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 414325 414708 . - 0 ID=Physo128947;Parent=Physo128947;rank=1 scaffold_6 . exon 414325 414708 . - . ID=Physo128947.1;Parent=Physo128947;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 415253 416206 . + . ID=Physo128948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60105;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 415253 416206 . + . ID=Physo128948;Parent=Physo128948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 415253 415297 . + 0 ID=Physo128948;Parent=Physo128948;rank=1 scaffold_6 . exon 415253 415297 . + . ID=Physo128948.1;Parent=Physo128948;constitutive=1;rank=1 scaffold_6 . CDS 415373 415631 . + 0 ID=Physo128948;Parent=Physo128948;rank=2 scaffold_6 . exon 415373 415631 . + . ID=Physo128948.2;Parent=Physo128948;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 415711 415850 . + 0 ID=Physo128948;Parent=Physo128948;rank=3 scaffold_6 . exon 415711 415850 . + . ID=Physo128948.3;Parent=Physo128948;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 415923 416036 . + 0 ID=Physo128948;Parent=Physo128948;rank=4 scaffold_6 . exon 415923 416036 . + . ID=Physo128948.4;Parent=Physo128948;constitutive=1;rank=4 scaffold_6 . CDS 416096 416206 . + 0 ID=Physo128948;Parent=Physo128948;rank=5 scaffold_6 . exon 416096 416206 . + . ID=Physo128948.5;Parent=Physo128948;constitutive=1;rank=5 scaffold_6 ensembl protein_coding_gene 416427 417343 . - . ID=Physo128949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60106;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 416427 417343 . - . ID=Physo128949;Parent=Physo128949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 416427 416564 . - . ID=Physo128949.3;Parent=Physo128949;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_6 . CDS 416545 416564 . - 0 ID=Physo128949;Parent=Physo128949;rank=3 scaffold_6 . CDS 416637 417207 . - 0 ID=Physo128949;Parent=Physo128949;rank=2 scaffold_6 . exon 416637 417207 . - . ID=Physo128949.2;Parent=Physo128949;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 417338 417343 . - 0 ID=Physo128949;Parent=Physo128949;rank=1 scaffold_6 . repeat_region 417368 417375 . ? . description=dust scaffold_6 . biological_region 418556 418556 0.999 - . logic_name=eponine scaffold_6 . biological_region 418645 418649 0.999 + . logic_name=eponine scaffold_6 . biological_region 418800 418800 0.999 + . logic_name=eponine scaffold_6 . biological_region 418815 418816 0.999 - . logic_name=eponine scaffold_6 . biological_region 418831 418831 0.999 - . logic_name=eponine scaffold_6 . biological_region 419402 419403 0.999 + . logic_name=eponine scaffold_6 . biological_region 420800 420801 0.999 - . logic_name=eponine scaffold_6 . biological_region 420960 420966 0.999 - . logic_name=eponine scaffold_6 . biological_region 422691 422694 0.999 - . logic_name=eponine scaffold_6 . repeat_region 423948 423993 . ? . description=dust scaffold_6 . exon 417338 417343 . - . ID=Physo128949.1;Parent=Physo128949;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 417928 419911 . + . ID=Physo128950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60107;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 417928 419911 . + . ID=Physo128950;Parent=Physo128950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 417928 417959 . + 0 ID=Physo128950;Parent=Physo128950;rank=1 scaffold_6 . exon 417928 417959 . + . ID=Physo128950.1;Parent=Physo128950;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 418440 419279 . + 0 ID=Physo128950;Parent=Physo128950;rank=2 scaffold_6 . exon 418440 419279 . + . ID=Physo128950.2;Parent=Physo128950;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 419300 419738 . + 0 ID=Physo128950;Parent=Physo128950;rank=3 scaffold_6 . exon 419300 419738 . + . ID=Physo128950.3;Parent=Physo128950;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 419774 419911 . + 0 ID=Physo128950;Parent=Physo128950;rank=4 scaffold_6 . exon 419774 419911 . + . ID=Physo128950.4;Parent=Physo128950;constitutive=1;rank=4 scaffold_6 ensembl protein_coding_gene 420704 422212 . + . ID=Physo128951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60108;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 420704 422212 . + . ID=Physo128951;Parent=Physo128951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 420704 422212 . + 0 ID=Physo128951;Parent=Physo128951;rank=1 scaffold_6 . exon 420704 422212 . + . ID=Physo128951.1;Parent=Physo128951;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 422410 424107 . + . ID=Physo128952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60109;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 422410 424107 . + . ID=Physo128952;Parent=Physo128952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 422410 422771 . + 0 ID=Physo128952;Parent=Physo128952;rank=1 scaffold_6 . exon 422410 422771 . + . ID=Physo128952.1;Parent=Physo128952;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 422850 422961 . + 0 ID=Physo128952;Parent=Physo128952;rank=2 scaffold_6 . exon 422850 422961 . + . ID=Physo128952.2;Parent=Physo128952;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 423040 424107 . + 0 ID=Physo128952;Parent=Physo128952;rank=3 scaffold_6 . exon 423040 424107 . + . ID=Physo128952.3;Parent=Physo128952;constitutive=1;rank=3 scaffold_6 ensembl protein_coding_gene 425460 426413 . - . ID=Physo128953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60110;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 425460 426413 . - . ID=Physo128953;Parent=Physo128953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 425460 425726 . - 0 ID=Physo128953;Parent=Physo128953;rank=4 scaffold_6 . exon 425460 425726 . - . ID=Physo128953.4;Parent=Physo128953;constitutive=1;rank=4 scaffold_6 . CDS 425806 425992 . - 0 ID=Physo128953;Parent=Physo128953;rank=3 scaffold_6 . exon 425806 425992 . - . ID=Physo128953.3;Parent=Physo128953;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 426063 426258 . - 0 ID=Physo128953;Parent=Physo128953;rank=2 scaffold_6 . exon 426063 426258 . - . ID=Physo128953.2;Parent=Physo128953;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 426371 426413 . - 0 ID=Physo128953;Parent=Physo128953;rank=1 scaffold_6 . exon 426371 426413 . - . ID=Physo128953.1;Parent=Physo128953;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . repeat_region 436926 437522 . ? . description=trf scaffold_6 ensembl protein_coding_gene 435669 436130 . - . ID=Physo128954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60111;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 435669 436130 . - . ID=Physo128954;Parent=Physo128954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 435669 436130 . - 0 ID=Physo128954;Parent=Physo128954;rank=1 scaffold_6 . exon 435669 436130 . - . ID=Physo128954.1;Parent=Physo128954;constitutive=1;rank=1 scaffold_6 . biological_region 437634 437635 0.999 - . logic_name=eponine scaffold_6 . biological_region 437662 437666 0.999 - . logic_name=eponine scaffold_6 . repeat_region 438470 438477 . ? . description=dust scaffold_6 . biological_region 446680 446681 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 438632 440353 . - . ID=Physo128955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60112;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 438632 440353 . - . ID=Physo128955;Parent=Physo128955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 438632 439738 . - 0 ID=Physo128955;Parent=Physo128955;rank=3 scaffold_6 . exon 438632 439738 . - . ID=Physo128955.3;Parent=Physo128955;constitutive=1;rank=3 scaffold_6 . CDS 439809 439896 . - 0 ID=Physo128955;Parent=Physo128955;rank=2 scaffold_6 . exon 439809 439896 . - . ID=Physo128955.2;Parent=Physo128955;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 439992 440353 . - 0 ID=Physo128955;Parent=Physo128955;rank=1 scaffold_6 . exon 439992 440353 . - . ID=Physo128955.1;Parent=Physo128955;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 440549 442237 . + . ID=Physo128956;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60113;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 440549 442237 . + . ID=Physo128956;Parent=Physo128956;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 440549 442237 . + 0 ID=Physo128956;Parent=Physo128956;rank=1 scaffold_6 . exon 440549 442237 . + . ID=Physo128956.1;Parent=Physo128956;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 446238 449164 . + . ID=Physo128957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60114;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 446238 449164 . + . ID=Physo128957;Parent=Physo128957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 446238 446278 . + 0 ID=Physo128957;Parent=Physo128957;rank=1 scaffold_6 . exon 446238 446278 . + . ID=Physo128957.1;Parent=Physo128957;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 446689 449164 . + 0 ID=Physo128957;Parent=Physo128957;rank=2 scaffold_6 . exon 446689 449164 . + . ID=Physo128957.2;Parent=Physo128957;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . repeat_region 454578 454993 . ? . description=trf scaffold_6 . repeat_region 454596 454993 . ? . description=trf scaffold_6 . repeat_region 455118 455413 . ? . description=trf scaffold_6 . repeat_region 455124 455404 . ? . description=trf scaffold_6 ensembl protein_coding_gene 449361 450374 . + . ID=Physo108319;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60009;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 449361 450374 . + . ID=Physo108319;Parent=Physo108319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 449361 449558 . + . ID=Physo108319.1;Parent=Physo108319;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 449411 449558 . + 0 ID=Physo108319;Parent=Physo108319;rank=1 scaffold_6 . CDS 449664 449785 . + 0 ID=Physo108319;Parent=Physo108319;rank=2 scaffold_6 . exon 449664 449785 . + . ID=Physo108319.2;Parent=Physo108319;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 449877 450146 . + 0 ID=Physo108319;Parent=Physo108319;rank=3 scaffold_6 . exon 449877 450374 . + . ID=Physo108319.3;Parent=Physo108319;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_6 ensembl protein_coding_gene 451112 458049 . - . ID=Physo128959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60116;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 451112 458049 . - . ID=Physo128959;Parent=Physo128959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 451112 456752 . - 0 ID=Physo128959;Parent=Physo128959;rank=6 scaffold_6 . exon 451112 456752 . - . ID=Physo128959.6;Parent=Physo128959;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 456833 457025 . - 0 ID=Physo128959;Parent=Physo128959;rank=5 scaffold_6 . CDS 457100 457234 . - 0 ID=Physo128959;Parent=Physo128959;rank=4 scaffold_6 . CDS 457318 457489 . - 0 ID=Physo128959;Parent=Physo128959;rank=3 scaffold_6 . CDS 457560 457804 . - 0 ID=Physo128959;Parent=Physo128959;rank=2 scaffold_6 . CDS 457884 458049 . - 0 ID=Physo128959;Parent=Physo128959;rank=1 scaffold_6 . repeat_region 457519 457539 . ? . description=dust scaffold_6 . biological_region 457613 457614 0.999 + . logic_name=eponine scaffold_6 . repeat_region 458463 458505 . ? . description=dust scaffold_6 . biological_region 462625 462629 0.999 + . logic_name=eponine scaffold_6 . biological_region 462632 462639 0.999 + . logic_name=eponine scaffold_6 . biological_region 462634 462641 0.999 - . logic_name=eponine scaffold_6 . biological_region 462675 462679 0.999 + . logic_name=eponine scaffold_6 . biological_region 462716 462722 0.999 + . logic_name=eponine scaffold_6 . biological_region 462728 462732 0.999 - . logic_name=eponine scaffold_6 . biological_region 462748 462753 0.999 - . logic_name=eponine scaffold_6 . biological_region 462785 462794 0.999 + . logic_name=eponine scaffold_6 . biological_region 462838 462838 0.999 - . logic_name=eponine scaffold_6 . biological_region 462853 462855 0.999 - . logic_name=eponine scaffold_6 . biological_region 462874 462877 0.999 - . logic_name=eponine scaffold_6 . biological_region 463264 463266 0.999 + . logic_name=eponine scaffold_6 . repeat_region 465217 465323 . ? . description=dust scaffold_6 . repeat_region 465356 465419 . ? . description=dust scaffold_6 . biological_region 466203 466205 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 464337 465872 . - . ID=Physo108320;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60010;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 464337 465872 . - . ID=Physo108320;Parent=Physo108320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 464337 465872 . - . ID=Physo108320.1;Parent=Physo108320;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . CDS 464526 465872 . - 0 ID=Physo108320;Parent=Physo108320;rank=1 scaffold_6 ensembl protein_coding_gene 458042 459351 . + . ID=Physo111482;biotype=protein_coding;external_name=estExt_Genewise1.C_60074;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 458042 459351 . + . ID=Physo111482;Parent=Physo111482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 458042 458464 . + . ID=Physo111482.1;Parent=Physo111482;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 458402 458464 . + 0 ID=Physo111482;Parent=Physo111482;rank=1 scaffold_6 . CDS 458544 458624 . + 0 ID=Physo111482;Parent=Physo111482;rank=2 scaffold_6 . exon 458544 458624 . + . ID=Physo111482.2;Parent=Physo111482;constitutive=1;rank=2 scaffold_6 . CDS 458698 458776 . + 0 ID=Physo111482;Parent=Physo111482;rank=3 scaffold_6 . exon 458698 458776 . + . ID=Physo111482.3;Parent=Physo111482;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 458849 458928 . + 0 ID=Physo111482;Parent=Physo111482;rank=4 scaffold_6 . exon 458849 458928 . + . ID=Physo111482.4;Parent=Physo111482;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 458989 459111 . + 0 ID=Physo111482;Parent=Physo111482;rank=5 scaffold_6 . exon 458989 459111 . + . ID=Physo111482.5;Parent=Physo111482;constitutive=1;rank=5 scaffold_6 . CDS 459184 459351 . + 0 ID=Physo111482;Parent=Physo111482;rank=6 scaffold_6 . exon 459184 459351 . + . ID=Physo111482.6;Parent=Physo111482;constitutive=1;rank=6 scaffold_6 ensembl protein_coding_gene 466606 468057 . - . ID=Physo111490;biotype=protein_coding;external_name=estExt_Genewise1.C_60082;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 466606 468057 . - . ID=Physo111490;Parent=Physo111490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 466606 467877 . - 0 ID=Physo111490;Parent=Physo111490;rank=1 scaffold_6 . exon 466606 468057 . - . ID=Physo111490.1;Parent=Physo111490;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . exon 456833 457025 . - . ID=Physo128959.5;Parent=Physo128959;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . exon 457100 457234 . - . ID=Physo128959.4;Parent=Physo128959;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . exon 457318 457489 . - . ID=Physo128959.3;Parent=Physo128959;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . exon 457560 457804 . - . ID=Physo128959.2;Parent=Physo128959;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . exon 457884 458049 . - . ID=Physo128959.1;Parent=Physo128959;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 460726 462912 . - . ID=Physo128961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60118;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 460726 462912 . - . ID=Physo128961;Parent=Physo128961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 460726 462912 . - 0 ID=Physo128961;Parent=Physo128961;rank=1 scaffold_6 . exon 460726 462912 . - . ID=Physo128961.1;Parent=Physo128961;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 470080 471499 . + . ID=Physo128964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60121;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 470080 471499 . + . ID=Physo128964;Parent=Physo128964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 470080 471448 . + 0 ID=Physo128964;Parent=Physo128964;rank=1 scaffold_6 . exon 470080 471448 . + . ID=Physo128964.1;Parent=Physo128964;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 471468 471499 . + 0 ID=Physo128964;Parent=Physo128964;rank=2 scaffold_6 . exon 471468 471499 . + . ID=Physo128964.2;Parent=Physo128964;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 472666 475309 . - . ID=Physo128965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60122;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 472666 475309 . - . ID=Physo128965;Parent=Physo128965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 472666 473160 . - . ID=Physo128965.3;Parent=Physo128965;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_6 . CDS 472762 473160 . - 0 ID=Physo128965;Parent=Physo128965;rank=3 scaffold_6 . CDS 473234 475206 . - 0 ID=Physo128965;Parent=Physo128965;rank=2 scaffold_6 . exon 473234 475206 . - . ID=Physo128965.2;Parent=Physo128965;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 475261 475309 . - 0 ID=Physo128965;Parent=Physo128965;rank=1 scaffold_6 . exon 475261 475309 . - . ID=Physo128965.1;Parent=Physo128965;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . biological_region 477668 477672 0.999 + . logic_name=eponine scaffold_6 . biological_region 481114 481114 0.999 - . logic_name=eponine scaffold_6 . repeat_region 481220 481236 . ? . description=dust scaffold_6 . biological_region 482532 482535 0.999 + . logic_name=eponine scaffold_6 . repeat_region 482968 482998 . ? . description=trf scaffold_6 . biological_region 486435 486435 0.999 + . logic_name=eponine scaffold_6 . biological_region 486506 486509 0.999 - . logic_name=eponine scaffold_6 . biological_region 486516 486519 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 481430 483355 . + . ID=Physo108322;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60012;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 481430 483355 . + . ID=Physo108322;Parent=Physo108322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 481430 482665 . + 0 ID=Physo108322;Parent=Physo108322;rank=1 scaffold_6 . exon 481430 482665 . + . ID=Physo108322.1;Parent=Physo108322;constitutive=1;rank=1 scaffold_6 . CDS 482807 483355 . + 0 ID=Physo108322;Parent=Physo108322;rank=2 scaffold_6 . exon 482807 483355 . + . ID=Physo108322.2;Parent=Physo108322;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 477431 478249 . + . ID=Physo128966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60123;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 477431 478249 . + . ID=Physo128966;Parent=Physo128966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 477431 478249 . + . ID=Physo128966.1;Parent=Physo128966;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 477476 478249 . + 0 ID=Physo128966;Parent=Physo128966;rank=1 scaffold_6 ensembl protein_coding_gene 484022 486517 . - . ID=Physo128969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60126;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 484022 486517 . - . ID=Physo128969;Parent=Physo128969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 484022 484084 . - 0 ID=Physo128969;Parent=Physo128969;rank=5 scaffold_6 . exon 484022 484084 . - . ID=Physo128969.5;Parent=Physo128969;constitutive=1;rank=5 scaffold_6 . CDS 484271 484822 . - 0 ID=Physo128969;Parent=Physo128969;rank=4 scaffold_6 . exon 484271 484822 . - . ID=Physo128969.4;Parent=Physo128969;constitutive=1;rank=4 scaffold_6 . CDS 485282 485374 . - 0 ID=Physo128969;Parent=Physo128969;rank=3 scaffold_6 . exon 485282 485374 . - . ID=Physo128969.3;Parent=Physo128969;constitutive=1;rank=3 scaffold_6 . CDS 485470 485538 . - 0 ID=Physo128969;Parent=Physo128969;rank=2 scaffold_6 . exon 485470 485538 . - . ID=Physo128969.2;Parent=Physo128969;constitutive=1;rank=2 scaffold_6 . CDS 485696 486517 . - 0 ID=Physo128969;Parent=Physo128969;rank=1 scaffold_6 . exon 485696 486517 . - . ID=Physo128969.1;Parent=Physo128969;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 479770 480779 . - . ID=Physo155573;biotype=protein_coding;external_name=C_scaffold_6000004;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 479770 480779 . - . ID=Physo155573;Parent=Physo155573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 479770 479918 . - 0 ID=Physo155573;Parent=Physo155573;rank=5 scaffold_6 . exon 479770 479918 . - . ID=Physo155573.5;Parent=Physo155573;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 480105 480293 . - 0 ID=Physo155573;Parent=Physo155573;rank=4 scaffold_6 . exon 480105 480293 . - . ID=Physo155573.4;Parent=Physo155573;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 480392 480444 . - 0 ID=Physo155573;Parent=Physo155573;rank=3 scaffold_6 . exon 480392 480444 . - . ID=Physo155573.3;Parent=Physo155573;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 480540 480605 . - 0 ID=Physo155573;Parent=Physo155573;rank=2 scaffold_6 . exon 480540 480605 . - . ID=Physo155573.2;Parent=Physo155573;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 480700 480779 . - 0 ID=Physo155573;Parent=Physo155573;rank=1 scaffold_6 . exon 480700 480779 . - . ID=Physo155573.1;Parent=Physo155573;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 486787 488140 . + . ID=Physo128970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60127;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 486787 488140 . + . ID=Physo128970;Parent=Physo128970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 486787 486859 . + . ID=Physo128970.1;Parent=Physo128970;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_6 . CDS 486798 486859 . + 0 ID=Physo128970;Parent=Physo128970;rank=1 scaffold_6 . CDS 486910 487004 . + 0 ID=Physo128970;Parent=Physo128970;rank=2 scaffold_6 . exon 486910 487004 . + . ID=Physo128970.2;Parent=Physo128970;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 487105 487184 . + 0 ID=Physo128970;Parent=Physo128970;rank=3 scaffold_6 . exon 487105 487184 . + . ID=Physo128970.3;Parent=Physo128970;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 487310 487372 . + 0 ID=Physo128970;Parent=Physo128970;rank=4 scaffold_6 . exon 487310 487372 . + . ID=Physo128970.4;Parent=Physo128970;constitutive=1;rank=4 scaffold_6 . CDS 487468 487518 . + 0 ID=Physo128970;Parent=Physo128970;rank=5 scaffold_6 . exon 487468 487518 . + . ID=Physo128970.5;Parent=Physo128970;constitutive=1;rank=5 scaffold_6 . CDS 487602 487673 . + 0 ID=Physo128970;Parent=Physo128970;rank=6 scaffold_6 . exon 487602 487673 . + . ID=Physo128970.6;Parent=Physo128970;constitutive=1;rank=6 scaffold_6 . CDS 487761 487927 . + 0 ID=Physo128970;Parent=Physo128970;rank=7 scaffold_6 . exon 487761 487927 . + . ID=Physo128970.7;Parent=Physo128970;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_6 . CDS 487996 488017 . + 0 ID=Physo128970;Parent=Physo128970;rank=8 scaffold_6 . exon 487996 488140 . + . ID=Physo128970.8;Parent=Physo128970;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=8 scaffold_6 ensembl protein_coding_gene 488270 490271 . + . ID=Physo128971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60128;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 488270 490271 . + . ID=Physo128971;Parent=Physo128971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 488270 488349 . + 0 ID=Physo128971;Parent=Physo128971;rank=1 scaffold_6 . exon 488270 488349 . + . ID=Physo128971.1;Parent=Physo128971;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 488422 488505 . + 0 ID=Physo128971;Parent=Physo128971;rank=2 scaffold_6 . exon 488422 488505 . + . ID=Physo128971.2;Parent=Physo128971;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 488592 488880 . + 0 ID=Physo128971;Parent=Physo128971;rank=3 scaffold_6 . exon 488592 488880 . + . ID=Physo128971.3;Parent=Physo128971;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 488957 489136 . + 0 ID=Physo128971;Parent=Physo128971;rank=4 scaffold_6 . exon 488957 489136 . + . ID=Physo128971.4;Parent=Physo128971;constitutive=1;rank=4 scaffold_6 . CDS 489225 490271 . + 0 ID=Physo128971;Parent=Physo128971;rank=5 scaffold_6 . exon 489225 490271 . + . ID=Physo128971.5;Parent=Physo128971;constitutive=1;rank=5 scaffold_6 ensembl protein_coding_gene 490433 491684 . - . ID=Physo128972;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60129;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 490433 491684 . - . ID=Physo128972;Parent=Physo128972;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 490433 490560 . - 0 ID=Physo128972;Parent=Physo128972;rank=4 scaffold_6 . exon 490433 490560 . - . ID=Physo128972.4;Parent=Physo128972;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 490629 490751 . - 0 ID=Physo128972;Parent=Physo128972;rank=3 scaffold_6 . exon 490629 490751 . - . ID=Physo128972.3;Parent=Physo128972;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 490829 491233 . - 0 ID=Physo128972;Parent=Physo128972;rank=2 scaffold_6 . exon 490829 491233 . - . ID=Physo128972.2;Parent=Physo128972;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 491309 491684 . - 0 ID=Physo128972;Parent=Physo128972;rank=1 scaffold_6 . exon 491309 491684 . - . ID=Physo128972.1;Parent=Physo128972;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 491856 493141 . + . ID=Physo128973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60130;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 491856 493141 . + . ID=Physo128973;Parent=Physo128973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 491856 492041 . + 0 ID=Physo128973;Parent=Physo128973;rank=1 scaffold_6 . exon 491856 492041 . + . ID=Physo128973.1;Parent=Physo128973;constitutive=1;rank=1 scaffold_6 . CDS 492119 493141 . + 0 ID=Physo128973;Parent=Physo128973;rank=2 scaffold_6 . exon 492119 493141 . + . ID=Physo128973.2;Parent=Physo128973;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 493292 496689 . - . ID=Physo128974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60131;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 493292 496689 . - . ID=Physo128974;Parent=Physo128974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 493292 493414 . - 0 ID=Physo128974;Parent=Physo128974;rank=4 scaffold_6 . exon 493292 493414 . - . ID=Physo128974.4;Parent=Physo128974;constitutive=1;rank=4 scaffold_6 . CDS 493483 496057 . - 0 ID=Physo128974;Parent=Physo128974;rank=3 scaffold_6 . exon 493483 496057 . - . ID=Physo128974.3;Parent=Physo128974;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 496153 496223 . - 0 ID=Physo128974;Parent=Physo128974;rank=2 scaffold_6 . exon 496153 496223 . - . ID=Physo128974.2;Parent=Physo128974;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 496300 496689 . - 0 ID=Physo128974;Parent=Physo128974;rank=1 scaffold_6 . exon 496300 496689 . - . ID=Physo128974.1;Parent=Physo128974;constitutive=1;rank=1 scaffold_6 . repeat_region 496822 496830 . ? . description=dust scaffold_6 . repeat_region 497173 497180 . ? . description=dust scaffold_6 . biological_region 500944 500951 0.999 + . logic_name=eponine scaffold_6 . biological_region 501075 501077 0.999 - . logic_name=eponine scaffold_6 . biological_region 501121 501124 0.999 - . logic_name=eponine scaffold_6 . biological_region 502545 502551 0.999 + . logic_name=eponine scaffold_6 . biological_region 502712 502713 0.999 - . logic_name=eponine scaffold_6 . repeat_region 504628 504668 . ? . description=trf scaffold_6 ensembl protein_coding_gene 499429 500229 . + . ID=Physo128975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60132;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 499429 500229 . + . ID=Physo128975;Parent=Physo128975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 499429 500229 . + . ID=Physo128975.1;Parent=Physo128975;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 499472 500137 . + 0 ID=Physo128975;Parent=Physo128975;rank=1 scaffold_6 ensembl protein_coding_gene 500516 501103 . + . ID=Physo128976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60133;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 500516 501103 . + . ID=Physo128976;Parent=Physo128976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 500516 501103 . + 0 ID=Physo128976;Parent=Physo128976;rank=1 scaffold_6 . exon 500516 501103 . + . ID=Physo128976.1;Parent=Physo128976;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 501953 504415 . + . ID=Physo128977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60134;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 501953 504415 . + . ID=Physo128977;Parent=Physo128977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 501953 504415 . + 0 ID=Physo128977;Parent=Physo128977;rank=1 scaffold_6 . exon 501953 504415 . + . ID=Physo128977.1;Parent=Physo128977;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 504492 505276 . - . ID=Physo128978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60135;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 504492 505276 . - . ID=Physo128978;Parent=Physo128978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 504492 505276 . - . ID=Physo128978.1;Parent=Physo128978;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 504568 505233 . - 0 ID=Physo128978;Parent=Physo128978;rank=1 scaffold_6 ensembl protein_coding_gene 505945 506736 . - . ID=Physo128979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60136;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 505945 506736 . - . ID=Physo128979;Parent=Physo128979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 505945 506736 . - 0 ID=Physo128979;Parent=Physo128979;rank=1 scaffold_6 . exon 505945 506736 . - . ID=Physo128979.1;Parent=Physo128979;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 507132 508062 . + . ID=Physo108323;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60013;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 507132 508062 . + . ID=Physo108323;Parent=Physo108323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 507132 507189 . + 0 ID=Physo108323;Parent=Physo108323;rank=1 scaffold_6 . exon 507132 507189 . + . ID=Physo108323.1;Parent=Physo108323;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 507274 507299 . + 0 ID=Physo108323;Parent=Physo108323;rank=2 scaffold_6 . exon 507274 507299 . + . ID=Physo108323.2;Parent=Physo108323;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 507405 507505 . + 0 ID=Physo108323;Parent=Physo108323;rank=3 scaffold_6 . exon 507405 507505 . + . ID=Physo108323.3;Parent=Physo108323;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 507590 507640 . + 0 ID=Physo108323;Parent=Physo108323;rank=4 scaffold_6 . exon 507590 507640 . + . ID=Physo108323.4;Parent=Physo108323;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_6 . CDS 507682 507701 . + 0 ID=Physo108323;Parent=Physo108323;rank=5 scaffold_6 . exon 507682 507701 . + . ID=Physo108323.5;Parent=Physo108323;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 507820 507904 . + 0 ID=Physo108323;Parent=Physo108323;rank=6 scaffold_6 . exon 507820 507904 . + . ID=Physo108323.6;Parent=Physo108323;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_6 . CDS 507942 507966 . + 0 ID=Physo108323;Parent=Physo108323;rank=7 scaffold_6 . exon 507942 507966 . + . ID=Physo108323.7;Parent=Physo108323;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 . CDS 508024 508062 . + 0 ID=Physo108323;Parent=Physo108323;rank=8 scaffold_6 . exon 508024 508062 . + . ID=Physo108323.8;Parent=Physo108323;constitutive=1;rank=8 scaffold_6 ensembl protein_coding_gene 508843 509900 . - . ID=Physo128981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60138;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 508843 509900 . - . ID=Physo128981;Parent=Physo128981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 508843 509528 . - 0 ID=Physo128981;Parent=Physo128981;rank=2 scaffold_6 . exon 508843 509528 . - . ID=Physo128981.2;Parent=Physo128981;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 509612 509900 . - 0 ID=Physo128981;Parent=Physo128981;rank=1 scaffold_6 . exon 509612 509900 . - . ID=Physo128981.1;Parent=Physo128981;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 510006 511090 . + . ID=Physo128982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60139;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 510006 511090 . + . ID=Physo128982;Parent=Physo128982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 510006 510151 . + . ID=Physo128982.1;Parent=Physo128982;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 510008 510151 . + 0 ID=Physo128982;Parent=Physo128982;rank=1 scaffold_6 . CDS 510251 510820 . + 0 ID=Physo128982;Parent=Physo128982;rank=2 scaffold_6 . exon 510251 510820 . + . ID=Physo128982.2;Parent=Physo128982;constitutive=1;rank=2 scaffold_6 . CDS 510906 511037 . + 0 ID=Physo128982;Parent=Physo128982;rank=3 scaffold_6 . exon 510906 511090 . + . ID=Physo128982.3;Parent=Physo128982;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_6 ensembl protein_coding_gene 512248 514560 . - . ID=Physo128984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60141;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 512248 514560 . - . ID=Physo128984;Parent=Physo128984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 512248 514560 . - . ID=Physo128984.1;Parent=Physo128984;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . CDS 512335 514560 . - 0 ID=Physo128984;Parent=Physo128984;rank=1 scaffold_6 ensembl protein_coding_gene 511165 512190 . + . ID=Physo155576;biotype=protein_coding;external_name=C_scaffold_6000007;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 511165 512190 . + . ID=Physo155576;Parent=Physo155576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 511165 511285 . + 0 ID=Physo155576;Parent=Physo155576;rank=1 scaffold_6 . exon 511165 511285 . + . ID=Physo155576.1;Parent=Physo155576;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 511381 511445 . + 0 ID=Physo155576;Parent=Physo155576;rank=2 scaffold_6 . exon 511381 511445 . + . ID=Physo155576.2;Parent=Physo155576;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 511534 511692 . + 0 ID=Physo155576;Parent=Physo155576;rank=3 scaffold_6 . exon 511534 511692 . + . ID=Physo155576.3;Parent=Physo155576;constitutive=1;rank=3 scaffold_6 . CDS 511772 511931 . + 0 ID=Physo155576;Parent=Physo155576;rank=4 scaffold_6 . exon 511772 511931 . + . ID=Physo155576.4;Parent=Physo155576;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 512008 512066 . + 0 ID=Physo155576;Parent=Physo155576;rank=5 scaffold_6 . exon 512008 512066 . + . ID=Physo155576.5;Parent=Physo155576;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 512143 512190 . + 0 ID=Physo155576;Parent=Physo155576;rank=6 scaffold_6 . exon 512143 512190 . + . ID=Physo155576.6;Parent=Physo155576;constitutive=1;rank=6 scaffold_6 . biological_region 516493 516495 0.999 + . logic_name=eponine scaffold_6 . repeat_region 517495 517638 . ? . description=trf scaffold_6 . biological_region 522687 522689 0.999 - . logic_name=eponine scaffold_6 . repeat_region 523518 523546 . ? . description=trf scaffold_6 . repeat_region 523535 523574 . ? . description=trf scaffold_6 . repeat_region 523535 523574 . ? . description=trf scaffold_6 . biological_region 524233 524235 0.999 - . logic_name=eponine scaffold_6 . repeat_region 525720 525769 . ? . description=dust scaffold_6 . biological_region 525962 525969 0.999 - . logic_name=eponine scaffold_6 . repeat_region 526051 526058 . ? . description=dust scaffold_6 ensembl protein_coding_gene 521837 522484 . - . ID=Physo128985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60142;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 521837 522484 . - . ID=Physo128985;Parent=Physo128985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 521837 521935 . - 0 ID=Physo128985;Parent=Physo128985;rank=2 scaffold_6 . exon 521837 521935 . - . ID=Physo128985.2;Parent=Physo128985;constitutive=1;rank=2 scaffold_6 . CDS 521957 522484 . - 0 ID=Physo128985;Parent=Physo128985;rank=1 scaffold_6 . exon 521957 522484 . - . ID=Physo128985.1;Parent=Physo128985;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 523893 525991 . - . ID=Physo155578;biotype=protein_coding;external_name=C_scaffold_6000009;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 523893 525991 . - . ID=Physo155578;Parent=Physo155578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 523893 524912 . - 0 ID=Physo155578;Parent=Physo155578;rank=5 scaffold_6 . exon 523893 524912 . - . ID=Physo155578.5;Parent=Physo155578;constitutive=1;rank=5 scaffold_6 . CDS 524996 525088 . - 0 ID=Physo155578;Parent=Physo155578;rank=4 scaffold_6 . exon 524996 525088 . - . ID=Physo155578.4;Parent=Physo155578;constitutive=1;rank=4 scaffold_6 . CDS 525172 525501 . - 0 ID=Physo155578;Parent=Physo155578;rank=3 scaffold_6 . exon 525172 525501 . - . ID=Physo155578.3;Parent=Physo155578;constitutive=1;rank=3 scaffold_6 . CDS 525547 525666 . - 0 ID=Physo155578;Parent=Physo155578;rank=2 scaffold_6 . exon 525547 525666 . - . ID=Physo155578.2;Parent=Physo155578;constitutive=1;rank=2 scaffold_6 . CDS 525827 525991 . - 0 ID=Physo155578;Parent=Physo155578;rank=1 scaffold_6 . exon 525827 525991 . - . ID=Physo155578.1;Parent=Physo155578;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 530957 531750 . - . ID=Physo111517;biotype=protein_coding;external_name=estExt_Genewise1.C_60109;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 530957 531750 . - . ID=Physo111517;Parent=Physo111517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 530957 531303 . - . ID=Physo111517.2;Parent=Physo111517;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_6 . CDS 530989 531303 . - 0 ID=Physo111517;Parent=Physo111517;rank=2 scaffold_6 . CDS 531387 531749 . - 0 ID=Physo111517;Parent=Physo111517;rank=1 scaffold_6 . exon 531387 531750 . - . ID=Physo111517.1;Parent=Physo111517;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 526740 528035 . - . ID=Physo128987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60144;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 526740 528035 . - . ID=Physo128987;Parent=Physo128987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 526740 528035 . - . ID=Physo128987.1;Parent=Physo128987;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . CDS 526866 528035 . - 0 ID=Physo128987;Parent=Physo128987;rank=1 scaffold_6 ensembl protein_coding_gene 533387 533778 . - . ID=Physo128990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60147;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 533387 533778 . - . ID=Physo128990;Parent=Physo128990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 533387 533559 . - 0 ID=Physo128990;Parent=Physo128990;rank=2 scaffold_6 . exon 533387 533559 . - . ID=Physo128990.2;Parent=Physo128990;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 533649 533778 . - 0 ID=Physo128990;Parent=Physo128990;rank=1 scaffold_6 . exon 533649 533778 . - . ID=Physo128990.1;Parent=Physo128990;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 532183 533051 . + . ID=Physo155582;biotype=protein_coding;external_name=C_scaffold_6000013;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 532183 533051 . + . ID=Physo155582;Parent=Physo155582;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 532183 532233 . + 0 ID=Physo155582;Parent=Physo155582;rank=1 scaffold_6 . exon 532183 532233 . + . ID=Physo155582.1;Parent=Physo155582;constitutive=1;rank=1 scaffold_6 . CDS 532313 532424 . + 0 ID=Physo155582;Parent=Physo155582;rank=2 scaffold_6 . exon 532313 532424 . + . ID=Physo155582.2;Parent=Physo155582;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 532546 532601 . + 0 ID=Physo155582;Parent=Physo155582;rank=3 scaffold_6 . exon 532546 532601 . + . ID=Physo155582.3;Parent=Physo155582;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 532685 532792 . + 0 ID=Physo155582;Parent=Physo155582;rank=4 scaffold_6 . exon 532685 532792 . + . ID=Physo155582.4;Parent=Physo155582;constitutive=1;rank=4 scaffold_6 . CDS 532875 533051 . + 0 ID=Physo155582;Parent=Physo155582;rank=5 scaffold_6 . exon 532875 533051 . + . ID=Physo155582.5;Parent=Physo155582;constitutive=1;rank=5 scaffold_6 ensembl protein_coding_gene 534085 535227 . + . ID=Physo155586;biotype=protein_coding;external_name=C_scaffold_6000017;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 534085 535227 . + . ID=Physo155586;Parent=Physo155586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 534085 535227 . + 0 ID=Physo155586;Parent=Physo155586;rank=1 scaffold_6 . exon 534085 535227 . + . ID=Physo155586.1;Parent=Physo155586;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 535420 537697 . + . ID=Physo155588;biotype=protein_coding;external_name=C_scaffold_6000019;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 535420 537697 . + . ID=Physo155588;Parent=Physo155588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 535420 535679 . + 0 ID=Physo155588;Parent=Physo155588;rank=1 scaffold_6 . exon 535420 535679 . + . ID=Physo155588.1;Parent=Physo155588;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 535759 536194 . + 0 ID=Physo155588;Parent=Physo155588;rank=2 scaffold_6 . exon 535759 536194 . + . ID=Physo155588.2;Parent=Physo155588;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 536273 536362 . + 0 ID=Physo155588;Parent=Physo155588;rank=3 scaffold_6 . exon 536273 536362 . + . ID=Physo155588.3;Parent=Physo155588;constitutive=1;rank=3 scaffold_6 . CDS 536429 536550 . + 0 ID=Physo155588;Parent=Physo155588;rank=4 scaffold_6 . CDS 536615 536746 . + 0 ID=Physo155588;Parent=Physo155588;rank=5 scaffold_6 . CDS 536821 537403 . + 0 ID=Physo155588;Parent=Physo155588;rank=6 scaffold_6 . CDS 537521 537697 . + 0 ID=Physo155588;Parent=Physo155588;rank=7 scaffold_6 . repeat_region 537855 537907 . ? . description=dust scaffold_6 . repeat_region 537868 537906 . ? . description=trf scaffold_6 . repeat_region 537910 537972 . ? . description=dust scaffold_6 . repeat_region 538166 538227 . ? . description=dust scaffold_6 . repeat_region 538239 538291 . ? . description=dust scaffold_6 . repeat_region 538243 538273 . ? . description=trf scaffold_6 . biological_region 538993 538994 0.999 + . logic_name=eponine scaffold_6 . biological_region 539032 539037 0.999 - . logic_name=eponine scaffold_6 . biological_region 540034 540042 0.999 + . logic_name=eponine scaffold_6 . biological_region 540065 540070 0.999 - . logic_name=eponine scaffold_6 . repeat_region 540181 540216 . ? . description=trf scaffold_6 . biological_region 540918 540918 0.999 - . logic_name=eponine scaffold_6 . biological_region 541498 541498 0.999 + . logic_name=eponine scaffold_6 . repeat_region 545471 545500 . ? . description=trf scaffold_6 ensembl protein_coding_gene 537844 538645 . - . ID=Physo128993;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60150;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 537844 538645 . - . ID=Physo128993;Parent=Physo128993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 537844 538461 . - 0 ID=Physo128993;Parent=Physo128993;rank=2 scaffold_6 . exon 537844 538461 . - . ID=Physo128993.2;Parent=Physo128993;constitutive=1;rank=2 scaffold_6 . CDS 538580 538645 . - 0 ID=Physo128993;Parent=Physo128993;rank=1 scaffold_6 . exon 538580 538645 . - . ID=Physo128993.1;Parent=Physo128993;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 541893 544538 . - . ID=Physo128995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60152;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 541893 544538 . - . ID=Physo128995;Parent=Physo128995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 541893 543138 . - 0 ID=Physo128995;Parent=Physo128995;rank=3 scaffold_6 . exon 541893 543138 . - . ID=Physo128995.3;Parent=Physo128995;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 543441 544458 . - 0 ID=Physo128995;Parent=Physo128995;rank=2 scaffold_6 . exon 543441 544458 . - . ID=Physo128995.2;Parent=Physo128995;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 544490 544538 . - 0 ID=Physo128995;Parent=Physo128995;rank=1 scaffold_6 . exon 544490 544538 . - . ID=Physo128995.1;Parent=Physo128995;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . exon 536429 536550 . + . ID=Physo155588.4;Parent=Physo155588;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . exon 536615 536746 . + . ID=Physo155588.5;Parent=Physo155588;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_6 . exon 536821 537403 . + . ID=Physo155588.6;Parent=Physo155588;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . exon 537521 537697 . + . ID=Physo155588.7;Parent=Physo155588;constitutive=1;rank=7 scaffold_6 ensembl protein_coding_gene 539944 541092 . + . ID=Physo155590;biotype=protein_coding;external_name=C_scaffold_6000021;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 539944 541092 . + . ID=Physo155590;Parent=Physo155590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 539944 541092 . + 0 ID=Physo155590;Parent=Physo155590;rank=1 scaffold_6 . exon 539944 541092 . + . ID=Physo155590.1;Parent=Physo155590;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 550801 552281 . + . ID=Physo128996;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60153;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 550801 552281 . + . ID=Physo128996;Parent=Physo128996;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 550801 552228 . + 0 ID=Physo128996;Parent=Physo128996;rank=1 scaffold_6 . exon 550801 552281 . + . ID=Physo128996.1;Parent=Physo128996;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 553361 554524 . + . ID=Physo128997;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60154;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 553361 554524 . + . ID=Physo128997;Parent=Physo128997;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 553361 554524 . + 0 ID=Physo128997;Parent=Physo128997;rank=1 scaffold_6 . exon 553361 554524 . + . ID=Physo128997.1;Parent=Physo128997;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 554943 558215 . + . ID=Physo128998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60155;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 554943 558215 . + . ID=Physo128998;Parent=Physo128998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 554943 554984 . + 0 ID=Physo128998;Parent=Physo128998;rank=1 scaffold_6 . exon 554943 554984 . + . ID=Physo128998.1;Parent=Physo128998;constitutive=1;rank=1 scaffold_6 . CDS 555011 555182 . + 0 ID=Physo128998;Parent=Physo128998;rank=2 scaffold_6 . exon 555011 555182 . + . ID=Physo128998.2;Parent=Physo128998;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 555244 555369 . + 0 ID=Physo128998;Parent=Physo128998;rank=3 scaffold_6 . exon 555244 555369 . + . ID=Physo128998.3;Parent=Physo128998;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 555393 556491 . + 0 ID=Physo128998;Parent=Physo128998;rank=4 scaffold_6 . exon 555393 556491 . + . ID=Physo128998.4;Parent=Physo128998;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_6 . CDS 556951 557046 . + 0 ID=Physo128998;Parent=Physo128998;rank=5 scaffold_6 . CDS 557152 557695 . + 0 ID=Physo128998;Parent=Physo128998;rank=6 scaffold_6 . CDS 558030 558215 . + 0 ID=Physo128998;Parent=Physo128998;rank=7 scaffold_6 . biological_region 556656 556659 0.999 + . logic_name=eponine scaffold_6 . repeat_region 560004 560016 . ? . description=dust scaffold_6 . repeat_region 560379 560409 . ? . description=dust scaffold_6 ensembl protein_coding_gene 558943 559677 . - . ID=Physo108325;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60015;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 558943 559677 . - . ID=Physo108325;Parent=Physo108325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 558943 559677 . - 0 ID=Physo108325;Parent=Physo108325;rank=1 scaffold_6 . exon 558943 559677 . - . ID=Physo108325.1;Parent=Physo108325;constitutive=1;rank=1 scaffold_6 . exon 556951 557046 . + . ID=Physo128998.5;Parent=Physo128998;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_6 . exon 557152 557695 . + . ID=Physo128998.6;Parent=Physo128998;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . exon 558030 558215 . + . ID=Physo128998.7;Parent=Physo128998;constitutive=1;rank=7 scaffold_6 ensembl protein_coding_gene 562676 564394 . - . ID=Physo129000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60157;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 562676 564394 . - . ID=Physo129000;Parent=Physo129000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 562676 564394 . - 0 ID=Physo129000;Parent=Physo129000;rank=1 scaffold_6 . exon 562676 564394 . - . ID=Physo129000.1;Parent=Physo129000;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 565493 567196 . + . ID=Physo129001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60158;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 565493 567196 . + . ID=Physo129001;Parent=Physo129001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 565493 567196 . + 0 ID=Physo129001;Parent=Physo129001;rank=1 scaffold_6 . exon 565493 567196 . + . ID=Physo129001.1;Parent=Physo129001;constitutive=1;rank=1 scaffold_6 . repeat_region 569605 571014 . + . description=Gypsy-2-I_PI-int scaffold_6 . repeat_region 571373 571937 . + . description=Gypsy-2-I_PI-int scaffold_6 . repeat_region 572669 572713 . ? . description=trf scaffold_6 ensembl protein_coding_gene 573520 574861 . + . ID=Physo129002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60159;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 573520 574861 . + . ID=Physo129002;Parent=Physo129002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 573520 573706 . + 0 ID=Physo129002;Parent=Physo129002;rank=1 scaffold_6 . exon 573520 573706 . + . ID=Physo129002.1;Parent=Physo129002;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 573874 574264 . + 0 ID=Physo129002;Parent=Physo129002;rank=2 scaffold_6 . exon 573874 574264 . + . ID=Physo129002.2;Parent=Physo129002;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 574492 574745 . + 0 ID=Physo129002;Parent=Physo129002;rank=3 scaffold_6 . exon 574492 574745 . + . ID=Physo129002.3;Parent=Physo129002;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 574848 574861 . + 0 ID=Physo129002;Parent=Physo129002;rank=4 scaffold_6 . exon 574848 574861 . + . ID=Physo129002.4;Parent=Physo129002;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 ensembl protein_coding_gene 575632 575982 . + . ID=Physo129003;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60160;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 575632 575982 . + . ID=Physo129003;Parent=Physo129003;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 575632 575982 . + 0 ID=Physo129003;Parent=Physo129003;rank=1 scaffold_6 . exon 575632 575982 . + . ID=Physo129003.1;Parent=Physo129003;constitutive=1;rank=1 scaffold_6 . biological_region 577895 577899 0.999 + . logic_name=eponine scaffold_6 . biological_region 578674 578674 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 577523 578782 . + . ID=Physo129004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60161;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 577523 578782 . + . ID=Physo129004;Parent=Physo129004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 577523 577831 . + 0 ID=Physo129004;Parent=Physo129004;rank=1 scaffold_6 . exon 577523 577831 . + . ID=Physo129004.1;Parent=Physo129004;constitutive=1;rank=1 scaffold_6 . CDS 577863 578051 . + 0 ID=Physo129004;Parent=Physo129004;rank=2 scaffold_6 . exon 577863 578051 . + . ID=Physo129004.2;Parent=Physo129004;constitutive=1;rank=2 scaffold_6 . CDS 578105 578782 . + 0 ID=Physo129004;Parent=Physo129004;rank=3 scaffold_6 . exon 578105 578782 . + . ID=Physo129004.3;Parent=Physo129004;constitutive=1;rank=3 scaffold_6 . repeat_region 587262 587270 . ? . description=dust scaffold_6 . repeat_region 587705 587728 . ? . description=trf scaffold_6 . repeat_region 587943 587951 . ? . description=dust scaffold_6 . repeat_region 590208 590218 . ? . description=dust scaffold_6 . repeat_region 590676 590699 . ? . description=dust scaffold_6 . repeat_region 590722 590731 . ? . description=dust scaffold_6 . repeat_region 591820 591849 . ? . description=trf scaffold_6 . repeat_region 592618 592639 . ? . description=trf scaffold_6 . repeat_region 593188 593230 . ? . description=trf scaffold_6 . repeat_region 594034 594047 . ? . description=dust scaffold_6 . biological_region 603896 603900 0.999 + . logic_name=eponine scaffold_6 . biological_region 604084 604090 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 604406 605829 . + . ID=Physo108326;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60016;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 604406 605829 . + . ID=Physo108326;Parent=Physo108326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 604406 605746 . + 0 ID=Physo108326;Parent=Physo108326;rank=1 scaffold_6 . exon 604406 605829 . + . ID=Physo108326.1;Parent=Physo108326;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 598314 600023 . - . ID=Physo129005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60162;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 598314 600023 . - . ID=Physo129005;Parent=Physo129005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 598314 600023 . - 0 ID=Physo129005;Parent=Physo129005;rank=1 scaffold_6 . exon 598314 600023 . - . ID=Physo129005.1;Parent=Physo129005;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 600639 602348 . + . ID=Physo129006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60163;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 600639 602348 . + . ID=Physo129006;Parent=Physo129006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 600639 602348 . + 0 ID=Physo129006;Parent=Physo129006;rank=1 scaffold_6 . exon 600639 602348 . + . ID=Physo129006.1;Parent=Physo129006;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 602829 604094 . + . ID=Physo129007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60164;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 602829 604094 . + . ID=Physo129007;Parent=Physo129007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 602829 604094 . + 0 ID=Physo129007;Parent=Physo129007;rank=1 scaffold_6 . exon 602829 604094 . + . ID=Physo129007.1;Parent=Physo129007;constitutive=1;rank=1 scaffold_6 . repeat_region 607404 607431 . ? . description=trf scaffold_6 . repeat_region 614358 614371 . ? . description=dust scaffold_6 ensembl protein_coding_gene 605997 606871 . - . ID=Physo108327;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60017;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 605997 606871 . - . ID=Physo108327;Parent=Physo108327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 605997 606779 . - 0 ID=Physo108327;Parent=Physo108327;rank=1 scaffold_6 . exon 605997 606871 . - . ID=Physo108327.1;Parent=Physo108327;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 607051 608650 . + . ID=Physo108328;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60018;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 607051 608650 . + . ID=Physo108328;Parent=Physo108328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 607051 607445 . + 0 ID=Physo108328;Parent=Physo108328;rank=1 scaffold_6 . exon 607051 607445 . + . ID=Physo108328.1;Parent=Physo108328;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 607530 608499 . + 0 ID=Physo108328;Parent=Physo108328;rank=2 scaffold_6 . exon 607530 608499 . + . ID=Physo108328.2;Parent=Physo108328;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 608570 608650 . + 0 ID=Physo108328;Parent=Physo108328;rank=3 scaffold_6 . exon 608570 608650 . + . ID=Physo108328.3;Parent=Physo108328;constitutive=1;rank=3 scaffold_6 ensembl protein_coding_gene 609473 610119 . - . ID=Physo129011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60168;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 609473 610119 . - . ID=Physo129011;Parent=Physo129011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 609473 609496 . - 0 ID=Physo129011;Parent=Physo129011;rank=4 scaffold_6 . exon 609473 609496 . - . ID=Physo129011.4;Parent=Physo129011;constitutive=1;rank=4 scaffold_6 . CDS 609571 609657 . - 0 ID=Physo129011;Parent=Physo129011;rank=3 scaffold_6 . exon 609571 609657 . - . ID=Physo129011.3;Parent=Physo129011;constitutive=1;rank=3 scaffold_6 . CDS 609740 609815 . - 0 ID=Physo129011;Parent=Physo129011;rank=2 scaffold_6 . exon 609740 609815 . - . ID=Physo129011.2;Parent=Physo129011;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 610001 610119 . - 0 ID=Physo129011;Parent=Physo129011;rank=1 scaffold_6 . exon 610001 610119 . - . ID=Physo129011.1;Parent=Physo129011;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 611716 615895 . + . ID=Physo155595;biotype=protein_coding;external_name=C_scaffold_6000026;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 611716 615895 . + . ID=Physo155595;Parent=Physo155595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 611716 611959 . + 0 ID=Physo155595;Parent=Physo155595;rank=1 scaffold_6 . exon 611716 611959 . + . ID=Physo155595.1;Parent=Physo155595;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 612154 612255 . + 0 ID=Physo155595;Parent=Physo155595;rank=2 scaffold_6 . exon 612154 612255 . + . ID=Physo155595.2;Parent=Physo155595;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 612325 612443 . + 0 ID=Physo155595;Parent=Physo155595;rank=3 scaffold_6 . exon 612325 612443 . + . ID=Physo155595.3;Parent=Physo155595;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 612524 613173 . + 0 ID=Physo155595;Parent=Physo155595;rank=4 scaffold_6 . exon 612524 613173 . + . ID=Physo155595.4;Parent=Physo155595;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 613512 613686 . + 0 ID=Physo155595;Parent=Physo155595;rank=5 scaffold_6 . exon 613512 613686 . + . ID=Physo155595.5;Parent=Physo155595;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 613765 614293 . + 0 ID=Physo155595;Parent=Physo155595;rank=6 scaffold_6 . exon 613765 614293 . + . ID=Physo155595.6;Parent=Physo155595;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_6 . CDS 614376 614416 . + 0 ID=Physo155595;Parent=Physo155595;rank=7 scaffold_6 . exon 614376 614416 . + . ID=Physo155595.7;Parent=Physo155595;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 614438 615211 . + 0 ID=Physo155595;Parent=Physo155595;rank=8 scaffold_6 . exon 614438 615211 . + . ID=Physo155595.8;Parent=Physo155595;constitutive=1;rank=8 scaffold_6 . CDS 615299 615895 . + 0 ID=Physo155595;Parent=Physo155595;rank=9 scaffold_6 . exon 615299 615895 . + . ID=Physo155595.9;Parent=Physo155595;constitutive=1;rank=9 scaffold_6 . biological_region 621025 621026 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 616075 616716 . - . ID=Physo129014;biotype=protein_coding;description=PsAvh80 [Source:UniProtKB/TrEMBL%3BAcc:E0W4Q3];external_name=estExt_fgenesh1_pg.C_60171;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 616075 616716 . - . ID=Physo129014;Parent=Physo129014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 616075 616716 . - 0 ID=Physo129014;Parent=Physo129014;rank=1 scaffold_6 . exon 616075 616716 . - . ID=Physo129014.1;Parent=Physo129014;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 624626 625267 . + . ID=Physo129015;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60172;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 624626 625267 . + . ID=Physo129015;Parent=Physo129015;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 624626 624638 . + 0 ID=Physo129015;Parent=Physo129015;rank=1 scaffold_6 . exon 624626 624638 . + . ID=Physo129015.1;Parent=Physo129015;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 624706 624924 . + 0 ID=Physo129015;Parent=Physo129015;rank=2 scaffold_6 . exon 624706 624924 . + . ID=Physo129015.2;Parent=Physo129015;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 625077 625267 . + 0 ID=Physo129015;Parent=Physo129015;rank=3 scaffold_6 . exon 625077 625267 . + . ID=Physo129015.3;Parent=Physo129015;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 ensembl protein_coding_gene 625821 628793 . + . ID=Physo129016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60173;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 625821 628793 . + . ID=Physo129016;Parent=Physo129016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 625821 625865 . + 0 ID=Physo129016;Parent=Physo129016;rank=1 scaffold_6 . exon 625821 625865 . + . ID=Physo129016.1;Parent=Physo129016;constitutive=1;rank=1 scaffold_6 . CDS 625950 626122 . + 0 ID=Physo129016;Parent=Physo129016;rank=2 scaffold_6 . exon 625950 626122 . + . ID=Physo129016.2;Parent=Physo129016;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 626263 626685 . + 0 ID=Physo129016;Parent=Physo129016;rank=3 scaffold_6 . exon 626263 626685 . + . ID=Physo129016.3;Parent=Physo129016;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 626763 626878 . + 0 ID=Physo129016;Parent=Physo129016;rank=4 scaffold_6 . exon 626763 626878 . + . ID=Physo129016.4;Parent=Physo129016;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 627720 627988 . + 0 ID=Physo129016;Parent=Physo129016;rank=5 scaffold_6 . exon 627720 627988 . + . ID=Physo129016.5;Parent=Physo129016;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 628011 628793 . + 0 ID=Physo129016;Parent=Physo129016;rank=6 scaffold_6 . exon 628011 628793 . + . ID=Physo129016.6;Parent=Physo129016;constitutive=1;rank=6 scaffold_6 ensembl protein_coding_gene 629144 630423 . - . ID=Physo129017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60174;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 629144 630423 . - . ID=Physo129017;Parent=Physo129017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 629144 629169 . - 0 ID=Physo129017;Parent=Physo129017;rank=5 scaffold_6 . exon 629144 629169 . - . ID=Physo129017.5;Parent=Physo129017;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 629274 629694 . - 0 ID=Physo129017;Parent=Physo129017;rank=4 scaffold_6 . exon 629274 629694 . - . ID=Physo129017.4;Parent=Physo129017;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 629758 630061 . - 0 ID=Physo129017;Parent=Physo129017;rank=3 scaffold_6 . exon 629758 630061 . - . ID=Physo129017.3;Parent=Physo129017;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 630179 630267 . - 0 ID=Physo129017;Parent=Physo129017;rank=2 scaffold_6 . exon 630179 630267 . - . ID=Physo129017.2;Parent=Physo129017;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 630349 630423 . - 0 ID=Physo129017;Parent=Physo129017;rank=1 scaffold_6 . exon 630349 630423 . - . ID=Physo129017.1;Parent=Physo129017;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 635201 635674 . - . ID=Physo129018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60175;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 635201 635674 . - . ID=Physo129018;Parent=Physo129018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 635201 635341 . - 0 ID=Physo129018;Parent=Physo129018;rank=1 scaffold_6 . exon 635201 635590 . - . ID=Physo129018.2;Parent=Physo129018;constitutive=1;ensembl_phase=-1;rank=2 scaffold_6 . biological_region 640623 640626 0.999 + . logic_name=eponine scaffold_6 . repeat_region 640934 640983 . ? . description=dust scaffold_6 . repeat_region 641244 641251 . ? . description=dust scaffold_6 . repeat_region 641428 641435 . ? . description=dust scaffold_6 . repeat_region 641478 641485 . ? . description=dust scaffold_6 . repeat_region 642841 642890 . ? . description=dust scaffold_6 . biological_region 643449 643452 0.999 + . logic_name=eponine scaffold_6 . biological_region 645327 645330 0.999 + . logic_name=eponine scaffold_6 . biological_region 645351 645351 0.999 - . logic_name=eponine scaffold_6 . biological_region 645383 645385 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 645175 646513 . - . ID=Physo108330;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60020;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 645175 646513 . - . ID=Physo108330;Parent=Physo108330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 645175 646513 . - . ID=Physo108330.1;Parent=Physo108330;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . CDS 645236 646513 . - 0 ID=Physo108330;Parent=Physo108330;rank=1 scaffold_6 . exon 635642 635674 . - . ID=Physo129018.1;Parent=Physo129018;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 640357 640888 . - . ID=Physo129019;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60176;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 640357 640888 . - . ID=Physo129019;Parent=Physo129019;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 640357 640583 . - 0 ID=Physo129019;Parent=Physo129019;rank=2 scaffold_6 . exon 640357 640583 . - . ID=Physo129019.2;Parent=Physo129019;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 640666 640888 . - 0 ID=Physo129019;Parent=Physo129019;rank=1 scaffold_6 . exon 640666 640888 . - . ID=Physo129019.1;Parent=Physo129019;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 641981 643066 . + . ID=Physo129020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60177;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 641981 643066 . + . ID=Physo129020;Parent=Physo129020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 641981 642086 . + 0 ID=Physo129020;Parent=Physo129020;rank=1 scaffold_6 . exon 641981 642086 . + . ID=Physo129020.1;Parent=Physo129020;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 642188 642301 . + 0 ID=Physo129020;Parent=Physo129020;rank=2 scaffold_6 . exon 642188 642301 . + . ID=Physo129020.2;Parent=Physo129020;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 642380 642830 . + 0 ID=Physo129020;Parent=Physo129020;rank=3 scaffold_6 . exon 642380 642830 . + . ID=Physo129020.3;Parent=Physo129020;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_6 . CDS 643057 643066 . + 0 ID=Physo129020;Parent=Physo129020;rank=4 scaffold_6 . exon 643057 643066 . + . ID=Physo129020.4;Parent=Physo129020;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 ensembl protein_coding_gene 643183 644695 . - . ID=Physo129021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60178;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 643183 644695 . - . ID=Physo129021;Parent=Physo129021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 643183 643409 . - 0 ID=Physo129021;Parent=Physo129021;rank=5 scaffold_6 . exon 643183 643409 . - . ID=Physo129021.5;Parent=Physo129021;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 643492 643730 . - 0 ID=Physo129021;Parent=Physo129021;rank=4 scaffold_6 . exon 643492 643730 . - . ID=Physo129021.4;Parent=Physo129021;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 643925 643995 . - 0 ID=Physo129021;Parent=Physo129021;rank=3 scaffold_6 . exon 643925 643995 . - . ID=Physo129021.3;Parent=Physo129021;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 644133 644296 . - 0 ID=Physo129021;Parent=Physo129021;rank=2 scaffold_6 . exon 644133 644296 . - . ID=Physo129021.2;Parent=Physo129021;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 644359 644695 . - 0 ID=Physo129021;Parent=Physo129021;rank=1 scaffold_6 . exon 644359 644695 . - . ID=Physo129021.1;Parent=Physo129021;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . repeat_region 650864 651033 . - . description=Polinton-1_PI scaffold_6 . repeat_region 651062 651128 . - . description=Polinton-1_PI scaffold_6 . repeat_region 651183 651467 . + . description=Polinton-1_PI scaffold_6 . repeat_region 651510 652163 . - . description=Polinton-1_PI scaffold_6 . repeat_region 654982 655151 . - . description=Polinton-1_PI scaffold_6 . repeat_region 655180 655246 . - . description=Polinton-1_PI scaffold_6 . repeat_region 655301 655585 . + . description=Polinton-1_PI scaffold_6 ensembl protein_coding_gene 646854 648007 . + . ID=Physo108331;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60021;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 646854 648007 . + . ID=Physo108331;Parent=Physo108331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 646854 648007 . + . ID=Physo108331.1;Parent=Physo108331;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 646857 647924 . + 0 ID=Physo108331;Parent=Physo108331;rank=1 scaffold_6 ensembl protein_coding_gene 648205 650829 . - . ID=Physo129024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60181;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 648205 650829 . - . ID=Physo129024;Parent=Physo129024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 648205 648344 . - 0 ID=Physo129024;Parent=Physo129024;rank=6 scaffold_6 . exon 648205 648344 . - . ID=Physo129024.6;Parent=Physo129024;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 648364 648770 . - 0 ID=Physo129024;Parent=Physo129024;rank=5 scaffold_6 . exon 648364 648770 . - . ID=Physo129024.5;Parent=Physo129024;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 648829 649511 . - 0 ID=Physo129024;Parent=Physo129024;rank=4 scaffold_6 . exon 648829 649511 . - . ID=Physo129024.4;Parent=Physo129024;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 649608 649913 . - 0 ID=Physo129024;Parent=Physo129024;rank=3 scaffold_6 . exon 649608 649913 . - . ID=Physo129024.3;Parent=Physo129024;constitutive=1;rank=3 scaffold_6 . CDS 650210 650575 . - 0 ID=Physo129024;Parent=Physo129024;rank=2 scaffold_6 . exon 650210 650575 . - . ID=Physo129024.2;Parent=Physo129024;constitutive=1;rank=2 scaffold_6 . CDS 650821 650829 . - 0 ID=Physo129024;Parent=Physo129024;rank=1 scaffold_6 . exon 650821 650829 . - . ID=Physo129024.1;Parent=Physo129024;constitutive=1;rank=1 scaffold_6 ensembl pseudogene 651227 651739 . - . ID=Physo129025;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_60182;logic_name=jgi_physo1_1 scaffold_6 ensembl pseudogene 651227 651739 . - . ID=Physo129025;Parent=Physo129025;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_6 . exon 651227 651739 . - . ID=Physo129025.1;Parent=Physo129025;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 652828 654947 . - . ID=Physo129026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60183;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 652828 654947 . - . ID=Physo129026;Parent=Physo129026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 652828 652888 . - 0 ID=Physo129026;Parent=Physo129026;rank=5 scaffold_6 . exon 652828 652888 . - . ID=Physo129026.5;Parent=Physo129026;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 652947 653629 . - 0 ID=Physo129026;Parent=Physo129026;rank=4 scaffold_6 . exon 652947 653629 . - . ID=Physo129026.4;Parent=Physo129026;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 653726 654031 . - 0 ID=Physo129026;Parent=Physo129026;rank=3 scaffold_6 . exon 653726 654031 . - . ID=Physo129026.3;Parent=Physo129026;constitutive=1;rank=3 scaffold_6 . CDS 654328 654693 . - 0 ID=Physo129026;Parent=Physo129026;rank=2 scaffold_6 . exon 654328 654693 . - . ID=Physo129026.2;Parent=Physo129026;constitutive=1;rank=2 scaffold_6 . CDS 654939 654947 . - 0 ID=Physo129026;Parent=Physo129026;rank=1 scaffold_6 . exon 654939 654947 . - . ID=Physo129026.1;Parent=Physo129026;constitutive=1;rank=1 scaffold_6 ensembl pseudogene 655345 655857 . - . ID=Physo129027;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_60184;logic_name=jgi_physo1_1 scaffold_6 ensembl pseudogene 655345 655857 . - . ID=Physo129027;Parent=Physo129027;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_6 . exon 655345 655857 . - . ID=Physo129027.1;Parent=Physo129027;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . repeat_region 657237 657276 . ? . description=trf scaffold_6 . repeat_region 662557 662564 . ? . description=dust scaffold_6 . repeat_region 662817 662857 . ? . description=dust scaffold_6 ensembl protein_coding_gene 657265 659966 . + . ID=Physo129028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60185;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 657265 659966 . + . ID=Physo129028;Parent=Physo129028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 657265 658657 . + 0 ID=Physo129028;Parent=Physo129028;rank=1 scaffold_6 . exon 657265 658657 . + . ID=Physo129028.1;Parent=Physo129028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 658703 658835 . + 0 ID=Physo129028;Parent=Physo129028;rank=2 scaffold_6 . exon 658703 658835 . + . ID=Physo129028.2;Parent=Physo129028;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 659270 659353 . + 0 ID=Physo129028;Parent=Physo129028;rank=3 scaffold_6 . exon 659270 659353 . + . ID=Physo129028.3;Parent=Physo129028;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 659375 659966 . + 0 ID=Physo129028;Parent=Physo129028;rank=4 scaffold_6 . exon 659375 659966 . + . ID=Physo129028.4;Parent=Physo129028;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . repeat_region 657275 665713 . + . description=Polinton-1_PI scaffold_6 . repeat_region 666114 667120 . + . description=Polinton-1_PI scaffold_6 . repeat_region 669412 674360 . + . description=Polinton-1_PI scaffold_6 . repeat_region 674361 674440 . + . description=Polinton-1_PI scaffold_6 . repeat_region 674512 674642 . + . description=Polinton-1_PI scaffold_6 . repeat_region 674666 674732 . + . description=Polinton-1_PI scaffold_6 . repeat_region 674761 674930 . + . description=Polinton-1_PI scaffold_6 ensembl protein_coding_gene 675099 676953 . - . ID=Physo129029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60186;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 675099 676953 . - . ID=Physo129029;Parent=Physo129029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 675099 675152 . - 0 ID=Physo129029;Parent=Physo129029;rank=4 scaffold_6 . exon 675099 675152 . - . ID=Physo129029.4;Parent=Physo129029;constitutive=1;rank=4 scaffold_6 . CDS 675236 676099 . - 0 ID=Physo129029;Parent=Physo129029;rank=3 scaffold_6 . exon 675236 676099 . - . ID=Physo129029.3;Parent=Physo129029;constitutive=1;rank=3 scaffold_6 . CDS 676342 676385 . - 0 ID=Physo129029;Parent=Physo129029;rank=2 scaffold_6 . CDS 676716 676953 . - 0 ID=Physo129029;Parent=Physo129029;rank=1 scaffold_6 . biological_region 675581 675583 0.999 - . logic_name=eponine scaffold_6 . repeat_region 678923 687408 . ? . description=dust scaffold_6 . exon 676342 676385 . - . ID=Physo129029.2;Parent=Physo129029;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . exon 676716 676953 . - . ID=Physo129029.1;Parent=Physo129029;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 688471 690523 . - . ID=Physo129030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60187;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 688471 690523 . - . ID=Physo129030;Parent=Physo129030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 688471 688475 . - 0 ID=Physo129030;Parent=Physo129030;rank=3 scaffold_6 . exon 688471 688475 . - . ID=Physo129030.3;Parent=Physo129030;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 688613 689589 . - 0 ID=Physo129030;Parent=Physo129030;rank=2 scaffold_6 . exon 688613 689589 . - . ID=Physo129030.2;Parent=Physo129030;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 689613 690523 . - 0 ID=Physo129030;Parent=Physo129030;rank=1 scaffold_6 . exon 689613 690523 . - . ID=Physo129030.1;Parent=Physo129030;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 693626 695181 . - . ID=Physo129031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60188;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 693626 695181 . - . ID=Physo129031;Parent=Physo129031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 693626 694459 . - 0 ID=Physo129031;Parent=Physo129031;rank=3 scaffold_6 . exon 693626 694459 . - . ID=Physo129031.3;Parent=Physo129031;constitutive=1;rank=3 scaffold_6 . CDS 694538 694756 . - 0 ID=Physo129031;Parent=Physo129031;rank=2 scaffold_6 . exon 694538 694756 . - . ID=Physo129031.2;Parent=Physo129031;constitutive=1;rank=2 scaffold_6 . CDS 694828 695181 . - 0 ID=Physo129031;Parent=Physo129031;rank=1 scaffold_6 . exon 694828 695181 . - . ID=Physo129031.1;Parent=Physo129031;constitutive=1;rank=1 scaffold_6 . biological_region 697468 697470 0.999 - . logic_name=eponine scaffold_6 . biological_region 702539 702546 0.999 + . logic_name=eponine scaffold_6 . biological_region 702787 702787 0.999 + . logic_name=eponine scaffold_6 . biological_region 702796 702800 0.999 + . logic_name=eponine scaffold_6 . biological_region 704996 705000 0.999 + . logic_name=eponine scaffold_6 . biological_region 705012 705015 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 696472 697746 . + . ID=Physo108332;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60022;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 696472 697746 . + . ID=Physo108332;Parent=Physo108332;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 696472 697467 . + 0 ID=Physo108332;Parent=Physo108332;rank=1 scaffold_6 . exon 696472 697467 . + . ID=Physo108332.1;Parent=Physo108332;constitutive=1;rank=1 scaffold_6 . CDS 697531 697746 . + 0 ID=Physo108332;Parent=Physo108332;rank=2 scaffold_6 . exon 697531 697746 . + . ID=Physo108332.2;Parent=Physo108332;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 695806 696368 . + . ID=Physo129032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60189;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 695806 696368 . + . ID=Physo129032;Parent=Physo129032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 695806 696366 . + 0 ID=Physo129032;Parent=Physo129032;rank=1 scaffold_6 . exon 695806 696368 . + . ID=Physo129032.1;Parent=Physo129032;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 698002 700968 . - . ID=Physo129034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60191;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 698002 700968 . - . ID=Physo129034;Parent=Physo129034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 698002 698103 . - 0 ID=Physo129034;Parent=Physo129034;rank=2 scaffold_6 . exon 698002 698103 . - . ID=Physo129034.2;Parent=Physo129034;constitutive=1;rank=2 scaffold_6 . CDS 698176 700968 . - 0 ID=Physo129034;Parent=Physo129034;rank=1 scaffold_6 . exon 698176 700968 . - . ID=Physo129034.1;Parent=Physo129034;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 702463 707141 . + . ID=Physo129035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60192;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 702463 707141 . + . ID=Physo129035;Parent=Physo129035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 702463 706941 . + 0 ID=Physo129035;Parent=Physo129035;rank=1 scaffold_6 . exon 702463 707141 . + . ID=Physo129035.1;Parent=Physo129035;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . repeat_region 707098 707112 . ? . description=dust scaffold_6 . repeat_region 707166 707173 . ? . description=dust scaffold_6 . biological_region 722102 722103 0.999 + . logic_name=eponine scaffold_6 . biological_region 722431 722432 0.999 - . logic_name=eponine scaffold_6 . biological_region 722467 722472 0.999 + . logic_name=eponine scaffold_6 . biological_region 722513 722517 0.999 - . logic_name=eponine scaffold_6 . biological_region 722515 722516 0.999 + . logic_name=eponine scaffold_6 . biological_region 722547 722554 0.999 - . logic_name=eponine scaffold_6 . biological_region 722568 722573 0.999 - . logic_name=eponine scaffold_6 . biological_region 722604 722606 0.999 + . logic_name=eponine scaffold_6 . biological_region 722611 722617 0.999 - . logic_name=eponine scaffold_6 . biological_region 723504 723508 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 721863 722867 . + . ID=Physo108333;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60023;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 721863 722867 . + . ID=Physo108333;Parent=Physo108333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 721863 722867 . + . ID=Physo108333.1;Parent=Physo108333;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 721875 722867 . + 0 ID=Physo108333;Parent=Physo108333;rank=1 scaffold_6 ensembl protein_coding_gene 715552 720181 . - . ID=Physo111565;biotype=protein_coding;external_name=estExt_Genewise1.C_60157;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 715552 720181 . - . ID=Physo111565;Parent=Physo111565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 715552 715786 . - 0 ID=Physo111565;Parent=Physo111565;rank=2 scaffold_6 . exon 715552 715786 . - . ID=Physo111565.2;Parent=Physo111565;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 719274 720067 . - 0 ID=Physo111565;Parent=Physo111565;rank=1 scaffold_6 . exon 719274 720181 . - . ID=Physo111565.1;Parent=Physo111565;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 720784 721632 . - . ID=Physo129037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60194;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 720784 721632 . - . ID=Physo129037;Parent=Physo129037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 720784 720792 . - 0 ID=Physo129037;Parent=Physo129037;rank=5 scaffold_6 . exon 720784 720792 . - . ID=Physo129037.5;Parent=Physo129037;constitutive=1;rank=5 scaffold_6 . CDS 720879 721172 . - 0 ID=Physo129037;Parent=Physo129037;rank=4 scaffold_6 . exon 720879 721172 . - . ID=Physo129037.4;Parent=Physo129037;constitutive=1;rank=4 scaffold_6 . CDS 721263 721338 . - 0 ID=Physo129037;Parent=Physo129037;rank=3 scaffold_6 . exon 721263 721338 . - . ID=Physo129037.3;Parent=Physo129037;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 721412 721494 . - 0 ID=Physo129037;Parent=Physo129037;rank=2 scaffold_6 . exon 721412 721494 . - . ID=Physo129037.2;Parent=Physo129037;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 721561 721632 . - 0 ID=Physo129037;Parent=Physo129037;rank=1 scaffold_6 . exon 721561 721632 . - . ID=Physo129037.1;Parent=Physo129037;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 723272 726235 . + . ID=Physo155598;biotype=protein_coding;external_name=C_scaffold_6000029;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 723272 726235 . + . ID=Physo155598;Parent=Physo155598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 723272 723624 . + 0 ID=Physo155598;Parent=Physo155598;rank=1 scaffold_6 . exon 723272 723624 . + . ID=Physo155598.1;Parent=Physo155598;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 723652 723738 . + 0 ID=Physo155598;Parent=Physo155598;rank=2 scaffold_6 . exon 723652 723738 . + . ID=Physo155598.2;Parent=Physo155598;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 723808 723948 . + 0 ID=Physo155598;Parent=Physo155598;rank=3 scaffold_6 . exon 723808 723948 . + . ID=Physo155598.3;Parent=Physo155598;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 723988 724025 . + 0 ID=Physo155598;Parent=Physo155598;rank=4 scaffold_6 . exon 723988 724025 . + . ID=Physo155598.4;Parent=Physo155598;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 724099 724258 . + 0 ID=Physo155598;Parent=Physo155598;rank=5 scaffold_6 . exon 724099 724258 . + . ID=Physo155598.5;Parent=Physo155598;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . CDS 724292 724545 . + 0 ID=Physo155598;Parent=Physo155598;rank=6 scaffold_6 . exon 724292 724545 . + . ID=Physo155598.6;Parent=Physo155598;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 724761 724897 . + 0 ID=Physo155598;Parent=Physo155598;rank=7 scaffold_6 . exon 724761 724897 . + . ID=Physo155598.7;Parent=Physo155598;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 725138 725330 . + 0 ID=Physo155598;Parent=Physo155598;rank=8 scaffold_6 . CDS 725405 725467 . + 0 ID=Physo155598;Parent=Physo155598;rank=9 scaffold_6 . CDS 725547 725575 . + 0 ID=Physo155598;Parent=Physo155598;rank=10 scaffold_6 . CDS 725642 725696 . + 0 ID=Physo155598;Parent=Physo155598;rank=11 scaffold_6 . CDS 725772 725850 . + 0 ID=Physo155598;Parent=Physo155598;rank=12 scaffold_6 . CDS 725916 726002 . + 0 ID=Physo155598;Parent=Physo155598;rank=13 scaffold_6 . CDS 726079 726235 . + 0 ID=Physo155598;Parent=Physo155598;rank=14 scaffold_6 . repeat_region 728491 728522 . ? . description=trf scaffold_6 . repeat_region 729576 729641 . ? . description=trf scaffold_6 . repeat_region 731444 731463 . ? . description=trf scaffold_6 ensembl protein_coding_gene 733564 734493 . - . ID=Physo111575;biotype=protein_coding;external_name=estExt_Genewise1.C_60167;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 733564 734493 . - . ID=Physo111575;Parent=Physo111575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 733564 734478 . - 0 ID=Physo111575;Parent=Physo111575;rank=1 scaffold_6 . exon 733564 734493 . - . ID=Physo111575.1;Parent=Physo111575;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 726290 728075 . - . ID=Physo129040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60197;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 726290 728075 . - . ID=Physo129040;Parent=Physo129040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 726290 728075 . - . ID=Physo129040.1;Parent=Physo129040;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . CDS 726390 728075 . - 0 ID=Physo129040;Parent=Physo129040;rank=1 scaffold_6 ensembl protein_coding_gene 731668 733188 . + . ID=Physo129041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60198;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 731668 733188 . + . ID=Physo129041;Parent=Physo129041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 731668 733188 . + 0 ID=Physo129041;Parent=Physo129041;rank=1 scaffold_6 . exon 731668 733188 . + . ID=Physo129041.1;Parent=Physo129041;constitutive=1;rank=1 scaffold_6 . exon 725138 725330 . + . ID=Physo155598.8;Parent=Physo155598;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_6 . exon 725405 725467 . + . ID=Physo155598.9;Parent=Physo155598;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_6 . exon 725547 725575 . + . ID=Physo155598.10;Parent=Physo155598;constitutive=1;ensembl_phase=1;rank=10 scaffold_6 . exon 725642 725696 . + . ID=Physo155598.11;Parent=Physo155598;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_6 . exon 725772 725850 . + . ID=Physo155598.12;Parent=Physo155598;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_6 . exon 725916 726002 . + . ID=Physo155598.13;Parent=Physo155598;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=13 scaffold_6 . exon 726079 726235 . + . ID=Physo155598.14;Parent=Physo155598;constitutive=1;ensembl_phase=2;rank=14 scaffold_6 . repeat_region 739470 739497 . ? . description=dust scaffold_6 . biological_region 739776 739779 0.999 - . logic_name=eponine scaffold_6 . biological_region 740722 740724 0.999 - . logic_name=eponine scaffold_6 . biological_region 741598 741602 0.999 + . logic_name=eponine scaffold_6 . biological_region 742859 742859 0.999 - . logic_name=eponine scaffold_6 . biological_region 744179 744180 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 741229 741806 . - . ID=Physo108335;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60025;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 741229 741806 . - . ID=Physo108335;Parent=Physo108335;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 741229 741340 . - 0 ID=Physo108335;Parent=Physo108335;rank=3 scaffold_6 . exon 741229 741340 . - . ID=Physo108335.3;Parent=Physo108335;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 741419 741474 . - 0 ID=Physo108335;Parent=Physo108335;rank=2 scaffold_6 . exon 741419 741474 . - . ID=Physo108335.2;Parent=Physo108335;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 741546 741806 . - 0 ID=Physo108335;Parent=Physo108335;rank=1 scaffold_6 . exon 741546 741806 . - . ID=Physo108335.1;Parent=Physo108335;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 742044 743536 . + . ID=Physo111588;biotype=protein_coding;external_name=estExt_Genewise1.C_60180;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 742044 743536 . + . ID=Physo111588;Parent=Physo111588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 742044 743536 . + . ID=Physo111588.1;Parent=Physo111588;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 742073 743536 . + 0 ID=Physo111588;Parent=Physo111588;rank=1 scaffold_6 ensembl protein_coding_gene 737621 739369 . - . ID=Physo129043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60200;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 737621 739369 . - . ID=Physo129043;Parent=Physo129043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 737621 737887 . - . ID=Physo129043.3;Parent=Physo129043;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_6 . CDS 737840 737887 . - 0 ID=Physo129043;Parent=Physo129043;rank=3 scaffold_6 . CDS 737968 738941 . - 0 ID=Physo129043;Parent=Physo129043;rank=2 scaffold_6 . exon 737968 738941 . - . ID=Physo129043.2;Parent=Physo129043;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 739009 739369 . - 0 ID=Physo129043;Parent=Physo129043;rank=1 scaffold_6 . exon 739009 739369 . - . ID=Physo129043.1;Parent=Physo129043;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 739980 741105 . + . ID=Physo129044;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60201;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 739980 741105 . + . ID=Physo129044;Parent=Physo129044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 739980 739999 . + 0 ID=Physo129044;Parent=Physo129044;rank=1 scaffold_6 . exon 739980 739999 . + . ID=Physo129044.1;Parent=Physo129044;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 740082 740290 . + 0 ID=Physo129044;Parent=Physo129044;rank=2 scaffold_6 . exon 740082 740290 . + . ID=Physo129044.2;Parent=Physo129044;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 740359 740535 . + 0 ID=Physo129044;Parent=Physo129044;rank=3 scaffold_6 . exon 740359 740535 . + . ID=Physo129044.3;Parent=Physo129044;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 740615 741105 . + 0 ID=Physo129044;Parent=Physo129044;rank=4 scaffold_6 . exon 740615 741105 . + . ID=Physo129044.4;Parent=Physo129044;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . repeat_region 754579 754763 . - . description=Polinton-1_PI scaffold_6 ensembl protein_coding_gene 752006 753669 . + . ID=Physo129047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60204;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 752006 753669 . + . ID=Physo129047;Parent=Physo129047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 752006 752646 . + 0 ID=Physo129047;Parent=Physo129047;rank=1 scaffold_6 . exon 752006 752646 . + . ID=Physo129047.1;Parent=Physo129047;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 752719 753306 . + 0 ID=Physo129047;Parent=Physo129047;rank=2 scaffold_6 . exon 752719 753306 . + . ID=Physo129047.2;Parent=Physo129047;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 753387 753553 . + 0 ID=Physo129047;Parent=Physo129047;rank=3 scaffold_6 . exon 753387 753553 . + . ID=Physo129047.3;Parent=Physo129047;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 753629 753669 . + 0 ID=Physo129047;Parent=Physo129047;rank=4 scaffold_6 . exon 753629 753669 . + . ID=Physo129047.4;Parent=Physo129047;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . repeat_region 755655 755663 . ? . description=dust scaffold_6 . repeat_region 756278 756286 . ? . description=dust scaffold_6 . repeat_region 763193 763201 . ? . description=dust scaffold_6 . repeat_region 762897 772079 . - . description=Polinton-1_PI scaffold_6 . repeat_region 772690 772733 . - . description=Polinton-1_PI scaffold_6 . repeat_region 772886 773185 . - . description=Polinton-1_PI scaffold_6 . repeat_region 773235 773305 . + . description=Polinton-1_PI scaffold_6 . repeat_region 773321 773505 . + . description=Polinton-1_PI scaffold_6 . biological_region 773498 773500 0.999 + . logic_name=eponine scaffold_6 . biological_region 774309 774312 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 773440 774959 . + . ID=Physo129048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60205;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 773440 774959 . + . ID=Physo129048;Parent=Physo129048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 773440 773451 . + 0 ID=Physo129048;Parent=Physo129048;rank=1 scaffold_6 . exon 773440 773451 . + . ID=Physo129048.1;Parent=Physo129048;constitutive=1;rank=1 scaffold_6 . CDS 773590 774674 . + 0 ID=Physo129048;Parent=Physo129048;rank=2 scaffold_6 . exon 773590 774674 . + . ID=Physo129048.2;Parent=Physo129048;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 774752 774959 . + 0 ID=Physo129048;Parent=Physo129048;rank=3 scaffold_6 . repeat_region 775395 775405 . ? . description=dust scaffold_6 . repeat_region 779739 779747 . ? . description=dust scaffold_6 ensembl protein_coding_gene 775893 777046 . + . ID=Physo108337;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60027;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 775893 777046 . + . ID=Physo108337;Parent=Physo108337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 775893 777046 . + . ID=Physo108337.1;Parent=Physo108337;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 775925 777046 . + 0 ID=Physo108337;Parent=Physo108337;rank=1 scaffold_6 . exon 774752 774959 . + . ID=Physo129048.3;Parent=Physo129048;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 ensembl protein_coding_gene 777201 779210 . - . ID=Physo129050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60207;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 777201 779210 . - . ID=Physo129050;Parent=Physo129050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 777201 777394 . - 0 ID=Physo129050;Parent=Physo129050;rank=8 scaffold_6 . exon 777201 777394 . - . ID=Physo129050.8;Parent=Physo129050;constitutive=1;ensembl_phase=1;rank=8 scaffold_6 . CDS 777465 777658 . - 0 ID=Physo129050;Parent=Physo129050;rank=7 scaffold_6 . exon 777465 777658 . - . ID=Physo129050.7;Parent=Physo129050;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_6 . CDS 777725 778101 . - 0 ID=Physo129050;Parent=Physo129050;rank=6 scaffold_6 . exon 777725 778101 . - . ID=Physo129050.6;Parent=Physo129050;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_6 . CDS 778182 778579 . - 0 ID=Physo129050;Parent=Physo129050;rank=5 scaffold_6 . exon 778182 778579 . - . ID=Physo129050.5;Parent=Physo129050;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 778654 778761 . - 0 ID=Physo129050;Parent=Physo129050;rank=4 scaffold_6 . exon 778654 778761 . - . ID=Physo129050.4;Parent=Physo129050;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 778863 778875 . - 0 ID=Physo129050;Parent=Physo129050;rank=3 scaffold_6 . exon 778863 778875 . - . ID=Physo129050.3;Parent=Physo129050;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 778901 779048 . - 0 ID=Physo129050;Parent=Physo129050;rank=2 scaffold_6 . exon 778901 779048 . - . ID=Physo129050.2;Parent=Physo129050;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 779113 779210 . - 0 ID=Physo129050;Parent=Physo129050;rank=1 scaffold_6 . exon 779113 779210 . - . ID=Physo129050.1;Parent=Physo129050;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 783373 785310 . - . ID=Physo129051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60208;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 783373 785310 . - . ID=Physo129051;Parent=Physo129051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 783373 783566 . - 0 ID=Physo129051;Parent=Physo129051;rank=6 scaffold_6 . exon 783373 783566 . - . ID=Physo129051.6;Parent=Physo129051;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 783650 783843 . - 0 ID=Physo129051;Parent=Physo129051;rank=5 scaffold_6 . exon 783650 783843 . - . ID=Physo129051.5;Parent=Physo129051;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 783918 784294 . - 0 ID=Physo129051;Parent=Physo129051;rank=4 scaffold_6 . exon 783918 784294 . - . ID=Physo129051.4;Parent=Physo129051;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 784375 784880 . - 0 ID=Physo129051;Parent=Physo129051;rank=3 scaffold_6 . exon 784375 784880 . - . ID=Physo129051.3;Parent=Physo129051;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 784948 785150 . - 0 ID=Physo129051;Parent=Physo129051;rank=2 scaffold_6 . CDS 785234 785310 . - 0 ID=Physo129051;Parent=Physo129051;rank=1 scaffold_6 . biological_region 785287 785289 0.999 + . logic_name=eponine scaffold_6 . biological_region 785466 785472 0.999 - . logic_name=eponine scaffold_6 . repeat_region 787109 787150 . ? . description=trf scaffold_6 . biological_region 787249 787253 0.999 - . logic_name=eponine scaffold_6 . biological_region 788272 788275 0.999 + . logic_name=eponine scaffold_6 . biological_region 788787 788792 0.999 + . logic_name=eponine scaffold_6 . biological_region 792932 792935 0.999 + . logic_name=eponine scaffold_6 . biological_region 792992 792994 0.999 + . logic_name=eponine scaffold_6 . biological_region 793018 793022 0.999 + . logic_name=eponine scaffold_6 . biological_region 793043 793046 0.999 + . logic_name=eponine scaffold_6 . biological_region 793050 793050 0.999 + . logic_name=eponine scaffold_6 . biological_region 793064 793068 0.999 - . logic_name=eponine scaffold_6 . biological_region 793072 793073 0.999 + . logic_name=eponine scaffold_6 . biological_region 793102 793106 0.999 - . logic_name=eponine scaffold_6 . biological_region 793121 793129 0.999 - . logic_name=eponine scaffold_6 . repeat_region 793670 793689 . ? . description=trf scaffold_6 . repeat_region 794056 794092 . ? . description=trf scaffold_6 . biological_region 794065 794068 0.999 + . logic_name=eponine scaffold_6 . biological_region 794130 794137 0.999 + . logic_name=eponine scaffold_6 . biological_region 794162 794168 0.999 + . logic_name=eponine scaffold_6 . biological_region 794199 794203 0.999 - . logic_name=eponine scaffold_6 . biological_region 794217 794222 0.999 - . logic_name=eponine scaffold_6 . biological_region 794224 794225 0.999 + . logic_name=eponine scaffold_6 . biological_region 794260 794261 0.999 - . logic_name=eponine scaffold_6 . exon 784948 785150 . - . ID=Physo129051.2;Parent=Physo129051;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . exon 785234 785310 . - . ID=Physo129051.1;Parent=Physo129051;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 786977 787781 . - . ID=Physo129052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60209;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 786977 787781 . - . ID=Physo129052;Parent=Physo129052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 786977 787319 . - 0 ID=Physo129052;Parent=Physo129052;rank=3 scaffold_6 . exon 786977 787319 . - . ID=Physo129052.3;Parent=Physo129052;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 787450 787513 . - 0 ID=Physo129052;Parent=Physo129052;rank=2 scaffold_6 . exon 787450 787513 . - . ID=Physo129052.2;Parent=Physo129052;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 787718 787781 . - 0 ID=Physo129052;Parent=Physo129052;rank=1 scaffold_6 . exon 787718 787781 . - . ID=Physo129052.1;Parent=Physo129052;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 788842 791441 . + . ID=Physo129053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60210;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 788842 791441 . + . ID=Physo129053;Parent=Physo129053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 788842 789882 . + 0 ID=Physo129053;Parent=Physo129053;rank=1 scaffold_6 . exon 788842 789882 . + . ID=Physo129053.1;Parent=Physo129053;constitutive=1;rank=1 scaffold_6 . CDS 789954 791441 . + 0 ID=Physo129053;Parent=Physo129053;rank=2 scaffold_6 . exon 789954 791441 . + . ID=Physo129053.2;Parent=Physo129053;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 791636 792670 . - . ID=Physo129054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60211;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 791636 792670 . - . ID=Physo129054;Parent=Physo129054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 791636 792670 . - 0 ID=Physo129054;Parent=Physo129054;rank=1 scaffold_6 . exon 791636 792670 . - . ID=Physo129054.1;Parent=Physo129054;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 792930 793637 . + . ID=Physo129055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60212;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 792930 793637 . + . ID=Physo129055;Parent=Physo129055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 792930 793637 . + 0 ID=Physo129055;Parent=Physo129055;rank=1 scaffold_6 . exon 792930 793637 . + . ID=Physo129055.1;Parent=Physo129055;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 794039 795525 . + . ID=Physo129056;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60213;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 794039 795525 . + . ID=Physo129056;Parent=Physo129056;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 794039 795229 . + 0 ID=Physo129056;Parent=Physo129056;rank=1 scaffold_6 . exon 794039 795229 . + . ID=Physo129056.1;Parent=Physo129056;constitutive=1;rank=1 scaffold_6 . CDS 795304 795495 . + 0 ID=Physo129056;Parent=Physo129056;rank=2 scaffold_6 . repeat_region 797564 797571 . ? . description=dust scaffold_6 ensembl protein_coding_gene 800359 801728 . + . ID=Physo108338;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60028;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 800359 801728 . + . ID=Physo108338;Parent=Physo108338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 800359 801149 . + 0 ID=Physo108338;Parent=Physo108338;rank=1 scaffold_6 . exon 800359 801149 . + . ID=Physo108338.1;Parent=Physo108338;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 801710 801728 . + 0 ID=Physo108338;Parent=Physo108338;rank=2 scaffold_6 . exon 801710 801728 . + . ID=Physo108338.2;Parent=Physo108338;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 ensembl protein_coding_gene 803489 804193 . + . ID=Physo111599;biotype=protein_coding;external_name=estExt_Genewise1.C_60191;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 803489 804193 . + . ID=Physo111599;Parent=Physo111599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 803489 804193 . + 0 ID=Physo111599;Parent=Physo111599;rank=1 scaffold_6 . exon 803489 804193 . + . ID=Physo111599.1;Parent=Physo111599;constitutive=1;rank=1 scaffold_6 . exon 795304 795525 . + . ID=Physo129056.2;Parent=Physo129056;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_6 ensembl protein_coding_gene 795676 797553 . - . ID=Physo129057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60214;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 795676 797553 . - . ID=Physo129057;Parent=Physo129057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 795676 797553 . - 0 ID=Physo129057;Parent=Physo129057;rank=1 scaffold_6 . exon 795676 797553 . - . ID=Physo129057.1;Parent=Physo129057;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 798920 800095 . - . ID=Physo129059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60216;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 798920 800095 . - . ID=Physo129059;Parent=Physo129059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 798920 799046 . - . ID=Physo129059.5;Parent=Physo129059;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_6 . CDS 799012 799046 . - 0 ID=Physo129059;Parent=Physo129059;rank=5 scaffold_6 . CDS 799145 799363 . - 0 ID=Physo129059;Parent=Physo129059;rank=4 scaffold_6 . exon 799145 799363 . - . ID=Physo129059.4;Parent=Physo129059;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 799613 799745 . - 0 ID=Physo129059;Parent=Physo129059;rank=3 scaffold_6 . exon 799613 799745 . - . ID=Physo129059.3;Parent=Physo129059;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 799802 799901 . - 0 ID=Physo129059;Parent=Physo129059;rank=2 scaffold_6 . exon 799802 799901 . - . ID=Physo129059.2;Parent=Physo129059;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 800052 800095 . - 0 ID=Physo129059;Parent=Physo129059;rank=1 scaffold_6 . exon 800052 800095 . - . ID=Physo129059.1;Parent=Physo129059;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 801686 803075 . - . ID=Physo129061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60218;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 801686 803075 . - . ID=Physo129061;Parent=Physo129061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 801686 802301 . - . ID=Physo129061.3;Parent=Physo129061;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_6 . CDS 801767 802301 . - 0 ID=Physo129061;Parent=Physo129061;rank=3 scaffold_6 . CDS 802382 802460 . - 0 ID=Physo129061;Parent=Physo129061;rank=2 scaffold_6 . exon 802382 802460 . - . ID=Physo129061.2;Parent=Physo129061;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 802547 803042 . - 0 ID=Physo129061;Parent=Physo129061;rank=1 scaffold_6 . exon 802547 803075 . - . ID=Physo129061.1;Parent=Physo129061;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 797903 798642 . + . ID=Physo155601;biotype=protein_coding;external_name=C_scaffold_6000032;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 797903 798642 . + . ID=Physo155601;Parent=Physo155601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 797903 797980 . + 0 ID=Physo155601;Parent=Physo155601;rank=1 scaffold_6 . exon 797903 797980 . + . ID=Physo155601.1;Parent=Physo155601;constitutive=1;rank=1 scaffold_6 . CDS 798076 798225 . + 0 ID=Physo155601;Parent=Physo155601;rank=2 scaffold_6 . exon 798076 798225 . + . ID=Physo155601.2;Parent=Physo155601;constitutive=1;rank=2 scaffold_6 . CDS 798292 798642 . + 0 ID=Physo155601;Parent=Physo155601;rank=3 scaffold_6 . exon 798292 798642 . + . ID=Physo155601.3;Parent=Physo155601;constitutive=1;rank=3 scaffold_6 . repeat_region 807376 807400 . ? . description=trf scaffold_6 . biological_region 809405 809410 0.999 + . logic_name=eponine scaffold_6 . biological_region 810013 810014 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 813613 814386 . + . ID=Physo111602;biotype=protein_coding;external_name=estExt_Genewise1.C_60194;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 813613 814386 . + . ID=Physo111602;Parent=Physo111602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 813613 814386 . + . ID=Physo111602.1;Parent=Physo111602;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 813658 814386 . + 0 ID=Physo111602;Parent=Physo111602;rank=1 scaffold_6 ensembl protein_coding_gene 804590 807495 . - . ID=Physo129063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60220;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 804590 807495 . - . ID=Physo129063;Parent=Physo129063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 804590 804634 . - 0 ID=Physo129063;Parent=Physo129063;rank=4 scaffold_6 . exon 804590 804634 . - . ID=Physo129063.4;Parent=Physo129063;constitutive=1;rank=4 scaffold_6 . CDS 804693 806939 . - 0 ID=Physo129063;Parent=Physo129063;rank=3 scaffold_6 . exon 804693 806939 . - . ID=Physo129063.3;Parent=Physo129063;constitutive=1;rank=3 scaffold_6 . CDS 807023 807159 . - 0 ID=Physo129063;Parent=Physo129063;rank=2 scaffold_6 . exon 807023 807159 . - . ID=Physo129063.2;Parent=Physo129063;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 807201 807495 . - 0 ID=Physo129063;Parent=Physo129063;rank=1 scaffold_6 . exon 807201 807495 . - . ID=Physo129063.1;Parent=Physo129063;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 807633 808252 . - . ID=Physo129064;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60221;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 807633 808252 . - . ID=Physo129064;Parent=Physo129064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 807633 807884 . - . ID=Physo129064.2;Parent=Physo129064;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_6 . CDS 807732 807884 . - 0 ID=Physo129064;Parent=Physo129064;rank=2 scaffold_6 . CDS 808076 808252 . - 0 ID=Physo129064;Parent=Physo129064;rank=1 scaffold_6 . exon 808076 808252 . - . ID=Physo129064.1;Parent=Physo129064;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 808421 811117 . + . ID=Physo129065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60222;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 808421 811117 . + . ID=Physo129065;Parent=Physo129065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 808421 808574 . + 0 ID=Physo129065;Parent=Physo129065;rank=1 scaffold_6 . exon 808421 808574 . + . ID=Physo129065.1;Parent=Physo129065;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 808841 808963 . + 0 ID=Physo129065;Parent=Physo129065;rank=2 scaffold_6 . exon 808841 808963 . + . ID=Physo129065.2;Parent=Physo129065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 809033 809143 . + 0 ID=Physo129065;Parent=Physo129065;rank=3 scaffold_6 . exon 809033 809143 . + . ID=Physo129065.3;Parent=Physo129065;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 809220 809350 . + 0 ID=Physo129065;Parent=Physo129065;rank=4 scaffold_6 . exon 809220 809350 . + . ID=Physo129065.4;Parent=Physo129065;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 809862 810514 . + 0 ID=Physo129065;Parent=Physo129065;rank=5 scaffold_6 . exon 809862 810514 . + . ID=Physo129065.5;Parent=Physo129065;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 810588 810662 . + 0 ID=Physo129065;Parent=Physo129065;rank=6 scaffold_6 . exon 810588 810662 . + . ID=Physo129065.6;Parent=Physo129065;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_6 . CDS 810757 811117 . + 0 ID=Physo129065;Parent=Physo129065;rank=7 scaffold_6 . exon 810757 811117 . + . ID=Physo129065.7;Parent=Physo129065;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 ensembl protein_coding_gene 811446 813240 . + . ID=Physo129066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60223;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 811446 813240 . + . ID=Physo129066;Parent=Physo129066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 811446 811591 . + . ID=Physo129066.1;Parent=Physo129066;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 811486 811591 . + 0 ID=Physo129066;Parent=Physo129066;rank=1 scaffold_6 . CDS 811664 811755 . + 0 ID=Physo129066;Parent=Physo129066;rank=2 scaffold_6 . exon 811664 811755 . + . ID=Physo129066.2;Parent=Physo129066;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 811826 812015 . + 0 ID=Physo129066;Parent=Physo129066;rank=3 scaffold_6 . exon 811826 812015 . + . ID=Physo129066.3;Parent=Physo129066;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 812083 812398 . + 0 ID=Physo129066;Parent=Physo129066;rank=4 scaffold_6 . exon 812083 812398 . + . ID=Physo129066.4;Parent=Physo129066;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_6 . CDS 812480 812525 . + 0 ID=Physo129066;Parent=Physo129066;rank=5 scaffold_6 . exon 812480 812525 . + . ID=Physo129066.5;Parent=Physo129066;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 812596 813240 . + 0 ID=Physo129066;Parent=Physo129066;rank=6 scaffold_6 . exon 812596 813240 . + . ID=Physo129066.6;Parent=Physo129066;constitutive=1;rank=6 scaffold_6 ensembl protein_coding_gene 823724 830400 . + . ID=Physo129072;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60229;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 823724 830400 . + . ID=Physo129072;Parent=Physo129072;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 823724 827846 . + 0 ID=Physo129072;Parent=Physo129072;rank=1 scaffold_6 . exon 823724 827846 . + . ID=Physo129072.1;Parent=Physo129072;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 827982 830064 . + 0 ID=Physo129072;Parent=Physo129072;rank=2 scaffold_6 . CDS 830163 830400 . + 0 ID=Physo129072;Parent=Physo129072;rank=3 scaffold_6 ensembl protein_coding_gene 816861 817349 . - . ID=Physo155602;biotype=protein_coding;external_name=C_scaffold_6000033;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 816861 817349 . - . ID=Physo155602;Parent=Physo155602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 816861 817349 . - 0 ID=Physo155602;Parent=Physo155602;rank=1 scaffold_6 . exon 816861 817349 . - . ID=Physo155602.1;Parent=Physo155602;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 818053 818550 . + . ID=Physo155603;biotype=protein_coding;external_name=C_scaffold_6000034;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 818053 818550 . + . ID=Physo155603;Parent=Physo155603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 818053 818550 . + 0 ID=Physo155603;Parent=Physo155603;rank=1 scaffold_6 . exon 818053 818550 . + . ID=Physo155603.1;Parent=Physo155603;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 818666 821380 . - . ID=Physo155604;biotype=protein_coding;external_name=C_scaffold_6000035;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 818666 821380 . - . ID=Physo155604;Parent=Physo155604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 818666 819156 . - 0 ID=Physo155604;Parent=Physo155604;rank=5 scaffold_6 . exon 818666 819156 . - . ID=Physo155604.5;Parent=Physo155604;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 819253 819279 . - 0 ID=Physo155604;Parent=Physo155604;rank=4 scaffold_6 . exon 819253 819279 . - . ID=Physo155604.4;Parent=Physo155604;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 819481 819838 . - 0 ID=Physo155604;Parent=Physo155604;rank=3 scaffold_6 . exon 819481 819838 . - . ID=Physo155604.3;Parent=Physo155604;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 819920 820401 . - 0 ID=Physo155604;Parent=Physo155604;rank=2 scaffold_6 . exon 819920 820401 . - . ID=Physo155604.2;Parent=Physo155604;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 820498 821380 . - 0 ID=Physo155604;Parent=Physo155604;rank=1 scaffold_6 . exon 820498 821380 . - . ID=Physo155604.1;Parent=Physo155604;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 822306 823385 . - . ID=Physo155606;biotype=protein_coding;external_name=C_scaffold_6000037;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 822306 823385 . - . ID=Physo155606;Parent=Physo155606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 822306 822320 . - 0 ID=Physo155606;Parent=Physo155606;rank=6 scaffold_6 . exon 822306 822320 . - . ID=Physo155606.6;Parent=Physo155606;constitutive=1;rank=6 scaffold_6 . CDS 822457 822523 . - 0 ID=Physo155606;Parent=Physo155606;rank=5 scaffold_6 . exon 822457 822523 . - . ID=Physo155606.5;Parent=Physo155606;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 822593 822695 . - 0 ID=Physo155606;Parent=Physo155606;rank=4 scaffold_6 . exon 822593 822695 . - . ID=Physo155606.4;Parent=Physo155606;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_6 . CDS 822785 822871 . - 0 ID=Physo155606;Parent=Physo155606;rank=3 scaffold_6 . exon 822785 822871 . - . ID=Physo155606.3;Parent=Physo155606;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 822960 823196 . - 0 ID=Physo155606;Parent=Physo155606;rank=2 scaffold_6 . exon 822960 823196 . - . ID=Physo155606.2;Parent=Physo155606;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 823268 823385 . - 0 ID=Physo155606;Parent=Physo155606;rank=1 scaffold_6 . exon 823268 823385 . - . ID=Physo155606.1;Parent=Physo155606;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . biological_region 830906 830908 0.999 - . logic_name=eponine scaffold_6 . repeat_region 832838 832857 . ? . description=trf scaffold_6 . biological_region 833175 833179 0.999 + . logic_name=eponine scaffold_6 . biological_region 833201 833208 0.999 + . logic_name=eponine scaffold_6 . biological_region 833244 833246 0.999 + . logic_name=eponine scaffold_6 . biological_region 833247 833252 0.999 - . logic_name=eponine scaffold_6 . repeat_region 833257 833287 . ? . description=dust scaffold_6 . biological_region 833257 833263 0.999 + . logic_name=eponine scaffold_6 . biological_region 833263 833267 0.999 - . logic_name=eponine scaffold_6 . biological_region 833273 833286 0.999 + . logic_name=eponine scaffold_6 . biological_region 833284 833289 0.999 - . logic_name=eponine scaffold_6 . biological_region 833317 833323 0.999 + . logic_name=eponine scaffold_6 . biological_region 833321 833323 0.999 - . logic_name=eponine scaffold_6 . biological_region 833365 833369 0.999 - . logic_name=eponine scaffold_6 . biological_region 833371 833378 0.999 + . logic_name=eponine scaffold_6 . biological_region 833390 833396 0.999 + . logic_name=eponine scaffold_6 . biological_region 833399 833406 0.999 + . logic_name=eponine scaffold_6 . repeat_region 833409 833469 . ? . description=dust scaffold_6 . repeat_region 833419 833465 . ? . description=trf scaffold_6 . biological_region 833453 833459 0.999 - . logic_name=eponine scaffold_6 . biological_region 833464 833470 0.999 - . logic_name=eponine scaffold_6 . biological_region 833490 833495 0.999 - . logic_name=eponine scaffold_6 . biological_region 833512 833518 0.999 - . logic_name=eponine scaffold_6 . biological_region 833532 833543 0.999 - . logic_name=eponine scaffold_6 . biological_region 833546 833548 0.999 + . logic_name=eponine scaffold_6 . biological_region 833651 833653 0.999 - . logic_name=eponine scaffold_6 . biological_region 833679 833681 0.999 - . logic_name=eponine scaffold_6 . exon 827982 830064 . + . ID=Physo129072.2;Parent=Physo129072;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . exon 830163 830400 . + . ID=Physo129072.3;Parent=Physo129072;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 ensembl protein_coding_gene 831190 833554 . - . ID=Physo129073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60230;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 831190 833554 . - . ID=Physo129073;Parent=Physo129073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 831190 833481 . - 0 ID=Physo129073;Parent=Physo129073;rank=1 scaffold_6 . exon 831190 833554 . - . ID=Physo129073.1;Parent=Physo129073;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 843339 846667 . + . ID=Physo129076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60233;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 843339 846667 . + . ID=Physo129076;Parent=Physo129076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 843339 844918 . + 0 ID=Physo129076;Parent=Physo129076;rank=1 scaffold_6 . exon 843339 844918 . + . ID=Physo129076.1;Parent=Physo129076;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 845004 845183 . + 0 ID=Physo129076;Parent=Physo129076;rank=2 scaffold_6 . CDS 845350 845357 . + 0 ID=Physo129076;Parent=Physo129076;rank=3 scaffold_6 . CDS 845421 845607 . + 0 ID=Physo129076;Parent=Physo129076;rank=4 scaffold_6 . CDS 845691 845736 . + 0 ID=Physo129076;Parent=Physo129076;rank=5 scaffold_6 . CDS 845815 845895 . + 0 ID=Physo129076;Parent=Physo129076;rank=6 scaffold_6 . CDS 845978 846026 . + 0 ID=Physo129076;Parent=Physo129076;rank=7 scaffold_6 . CDS 846103 846210 . + 0 ID=Physo129076;Parent=Physo129076;rank=8 scaffold_6 . CDS 846315 846475 . + 0 ID=Physo129076;Parent=Physo129076;rank=9 scaffold_6 . CDS 846563 846667 . + 0 ID=Physo129076;Parent=Physo129076;rank=10 scaffold_6 ensembl protein_coding_gene 836714 837803 . + . ID=Physo155611;biotype=protein_coding;external_name=C_scaffold_6000042;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 836714 837803 . + . ID=Physo155611;Parent=Physo155611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 836714 837124 . + 0 ID=Physo155611;Parent=Physo155611;rank=1 scaffold_6 . exon 836714 837124 . + . ID=Physo155611.1;Parent=Physo155611;constitutive=1;rank=1 scaffold_6 . CDS 837198 837389 . + 0 ID=Physo155611;Parent=Physo155611;rank=2 scaffold_6 . exon 837198 837389 . + . ID=Physo155611.2;Parent=Physo155611;constitutive=1;rank=2 scaffold_6 . CDS 837473 837603 . + 0 ID=Physo155611;Parent=Physo155611;rank=3 scaffold_6 . exon 837473 837603 . + . ID=Physo155611.3;Parent=Physo155611;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 837686 837803 . + 0 ID=Physo155611;Parent=Physo155611;rank=4 scaffold_6 . exon 837686 837803 . + . ID=Physo155611.4;Parent=Physo155611;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 ensembl protein_coding_gene 838547 841558 . + . ID=Physo155613;biotype=protein_coding;external_name=C_scaffold_6000044;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 838547 841558 . + . ID=Physo155613;Parent=Physo155613;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 838547 838890 . + 0 ID=Physo155613;Parent=Physo155613;rank=1 scaffold_6 . exon 838547 838890 . + . ID=Physo155613.1;Parent=Physo155613;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 838945 839199 . + 0 ID=Physo155613;Parent=Physo155613;rank=2 scaffold_6 . exon 838945 839199 . + . ID=Physo155613.2;Parent=Physo155613;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 839296 839504 . + 0 ID=Physo155613;Parent=Physo155613;rank=3 scaffold_6 . exon 839296 839504 . + . ID=Physo155613.3;Parent=Physo155613;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 839538 839695 . + 0 ID=Physo155613;Parent=Physo155613;rank=4 scaffold_6 . exon 839538 839695 . + . ID=Physo155613.4;Parent=Physo155613;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 839924 839975 . + 0 ID=Physo155613;Parent=Physo155613;rank=5 scaffold_6 . exon 839924 839975 . + . ID=Physo155613.5;Parent=Physo155613;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_6 . CDS 840200 840286 . + 0 ID=Physo155613;Parent=Physo155613;rank=6 scaffold_6 . exon 840200 840286 . + . ID=Physo155613.6;Parent=Physo155613;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 840633 841268 . + 0 ID=Physo155613;Parent=Physo155613;rank=7 scaffold_6 . exon 840633 841268 . + . ID=Physo155613.7;Parent=Physo155613;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 841296 841558 . + 0 ID=Physo155613;Parent=Physo155613;rank=8 scaffold_6 . exon 841296 841558 . + . ID=Physo155613.8;Parent=Physo155613;constitutive=1;ensembl_phase=1;rank=8 scaffold_6 ensembl protein_coding_gene 841704 842052 . - . ID=Physo155615;biotype=protein_coding;external_name=C_scaffold_6000046;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 841704 842052 . - . ID=Physo155615;Parent=Physo155615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 841704 841841 . - 0 ID=Physo155615;Parent=Physo155615;rank=2 scaffold_6 . exon 841704 841841 . - . ID=Physo155615.2;Parent=Physo155615;constitutive=1;rank=2 scaffold_6 . CDS 841912 842052 . - 0 ID=Physo155615;Parent=Physo155615;rank=1 scaffold_6 . exon 841912 842052 . - . ID=Physo155615.1;Parent=Physo155615;constitutive=1;rank=1 scaffold_6 . biological_region 845492 845498 0.999 + . logic_name=eponine scaffold_6 . repeat_region 847264 847301 . - . description=Sola3-2_PS scaffold_6 . repeat_region 847367 847399 . ? . description=trf scaffold_6 . biological_region 848090 848092 0.999 - . logic_name=eponine scaffold_6 . repeat_region 851790 851798 . ? . description=dust scaffold_6 . repeat_region 852424 852447 . ? . description=dust scaffold_6 . exon 845004 845183 . + . ID=Physo129076.2;Parent=Physo129076;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . exon 845350 845357 . + . ID=Physo129076.3;Parent=Physo129076;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . exon 845421 845607 . + . ID=Physo129076.4;Parent=Physo129076;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_6 . exon 845691 845736 . + . ID=Physo129076.5;Parent=Physo129076;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . exon 845815 845895 . + . ID=Physo129076.6;Parent=Physo129076;constitutive=1;rank=6 scaffold_6 . exon 845978 846026 . + . ID=Physo129076.7;Parent=Physo129076;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_6 . exon 846103 846210 . + . ID=Physo129076.8;Parent=Physo129076;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=8 scaffold_6 . exon 846315 846475 . + . ID=Physo129076.9;Parent=Physo129076;constitutive=1;ensembl_phase=1;rank=9 scaffold_6 . exon 846563 846667 . + . ID=Physo129076.10;Parent=Physo129076;constitutive=1;rank=10 scaffold_6 ensembl protein_coding_gene 851818 852777 . - . ID=Physo129077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60234;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 851818 852777 . - . ID=Physo129077;Parent=Physo129077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 851818 851837 . - 0 ID=Physo129077;Parent=Physo129077;rank=4 scaffold_6 . exon 851818 851837 . - . ID=Physo129077.4;Parent=Physo129077;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 851896 852298 . - 0 ID=Physo129077;Parent=Physo129077;rank=3 scaffold_6 . exon 851896 852298 . - . ID=Physo129077.3;Parent=Physo129077;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 852466 852613 . - 0 ID=Physo129077;Parent=Physo129077;rank=2 scaffold_6 . exon 852466 852613 . - . ID=Physo129077.2;Parent=Physo129077;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 852668 852777 . - 0 ID=Physo129077;Parent=Physo129077;rank=1 scaffold_6 . exon 852668 852777 . - . ID=Physo129077.1;Parent=Physo129077;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 853262 854103 . + . ID=Physo129078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60235;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 853262 854103 . + . ID=Physo129078;Parent=Physo129078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 853262 853345 . + . ID=Physo129078.1;Parent=Physo129078;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 853268 853345 . + 0 ID=Physo129078;Parent=Physo129078;rank=1 scaffold_6 . CDS 853413 853565 . + 0 ID=Physo129078;Parent=Physo129078;rank=2 scaffold_6 . exon 853413 853565 . + . ID=Physo129078.2;Parent=Physo129078;constitutive=1;rank=2 scaffold_6 . CDS 853646 853875 . + 0 ID=Physo129078;Parent=Physo129078;rank=3 scaffold_6 . exon 853646 853875 . + . ID=Physo129078.3;Parent=Physo129078;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 853952 854006 . + 0 ID=Physo129078;Parent=Physo129078;rank=4 scaffold_6 . exon 853952 854103 . + . ID=Physo129078.4;Parent=Physo129078;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_6 ensembl protein_coding_gene 859988 861024 . - . ID=Physo108340;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60030;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 859988 861024 . - . ID=Physo108340;Parent=Physo108340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 859988 860489 . - . ID=Physo108340.4;Parent=Physo108340;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_6 . CDS 860005 860489 . - 0 ID=Physo108340;Parent=Physo108340;rank=4 scaffold_6 . CDS 860563 860644 . - 0 ID=Physo108340;Parent=Physo108340;rank=3 scaffold_6 . exon 860563 860644 . - . ID=Physo108340.3;Parent=Physo108340;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 860744 860838 . - 0 ID=Physo108340;Parent=Physo108340;rank=2 scaffold_6 . exon 860744 860838 . - . ID=Physo108340.2;Parent=Physo108340;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 860924 860990 . - 0 ID=Physo108340;Parent=Physo108340;rank=1 scaffold_6 . exon 860924 861024 . - . ID=Physo108340.1;Parent=Physo108340;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 861846 862802 . + . ID=Physo108341;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60031;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 861846 862802 . + . ID=Physo108341;Parent=Physo108341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 861846 862802 . + . ID=Physo108341.1;Parent=Physo108341;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 861867 862802 . + 0 ID=Physo108341;Parent=Physo108341;rank=1 scaffold_6 ensembl protein_coding_gene 862872 864969 . - . ID=Physo129083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60240;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 862872 864969 . - . ID=Physo129083;Parent=Physo129083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 862872 863155 . - . ID=Physo129083.3;Parent=Physo129083;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_6 . CDS 862991 863155 . - 0 ID=Physo129083;Parent=Physo129083;rank=3 scaffold_6 . CDS 863228 864567 . - 0 ID=Physo129083;Parent=Physo129083;rank=2 scaffold_6 . exon 863228 864567 . - . ID=Physo129083.2;Parent=Physo129083;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 864639 864843 . - 0 ID=Physo129083;Parent=Physo129083;rank=1 scaffold_6 ensembl protein_coding_gene 855243 858890 . + . ID=Physo155620;biotype=protein_coding;external_name=C_scaffold_6000051;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 855243 858890 . + . ID=Physo155620;Parent=Physo155620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 855243 856048 . + 0 ID=Physo155620;Parent=Physo155620;rank=1 scaffold_6 . exon 855243 856048 . + . ID=Physo155620.1;Parent=Physo155620;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 856088 857499 . + 0 ID=Physo155620;Parent=Physo155620;rank=2 scaffold_6 . exon 856088 857499 . + . ID=Physo155620.2;Parent=Physo155620;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 857581 857981 . + 0 ID=Physo155620;Parent=Physo155620;rank=3 scaffold_6 . exon 857581 857981 . + . ID=Physo155620.3;Parent=Physo155620;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 858156 858890 . + 0 ID=Physo155620;Parent=Physo155620;rank=4 scaffold_6 . exon 858156 858890 . + . ID=Physo155620.4;Parent=Physo155620;constitutive=1;rank=4 scaffold_6 ensembl protein_coding_gene 859288 859602 . - . ID=Physo155621;biotype=protein_coding;external_name=C_scaffold_6000052;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 859288 859602 . - . ID=Physo155621;Parent=Physo155621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 859288 859602 . - 0 ID=Physo155621;Parent=Physo155621;rank=1 scaffold_6 . exon 859288 859602 . - . ID=Physo155621.1;Parent=Physo155621;constitutive=1;rank=1 scaffold_6 . biological_region 864262 864264 0.999 - . logic_name=eponine scaffold_6 . biological_region 864290 864293 0.999 - . logic_name=eponine scaffold_6 . biological_region 864345 864350 0.999 + . logic_name=eponine scaffold_6 . biological_region 864363 864371 0.999 + . logic_name=eponine scaffold_6 . biological_region 864365 864370 0.999 - . logic_name=eponine scaffold_6 . biological_region 864425 864428 0.999 - . logic_name=eponine scaffold_6 . biological_region 864491 864492 0.999 - . logic_name=eponine scaffold_6 . biological_region 864889 864894 0.999 + . logic_name=eponine scaffold_6 . biological_region 864893 864896 0.999 - . logic_name=eponine scaffold_6 . biological_region 864909 864916 0.999 + . logic_name=eponine scaffold_6 . biological_region 864911 864911 0.999 - . logic_name=eponine scaffold_6 . biological_region 864947 864951 0.999 + . logic_name=eponine scaffold_6 . biological_region 864969 864972 0.999 + . logic_name=eponine scaffold_6 . biological_region 865000 865005 0.999 - . logic_name=eponine scaffold_6 . biological_region 865057 865063 0.999 - . logic_name=eponine scaffold_6 . biological_region 865079 865088 0.999 - . logic_name=eponine scaffold_6 . biological_region 865115 865120 0.999 + . logic_name=eponine scaffold_6 . biological_region 865801 865805 0.999 - . logic_name=eponine scaffold_6 . biological_region 865993 865996 0.999 + . logic_name=eponine scaffold_6 . biological_region 866065 866067 0.999 - . logic_name=eponine scaffold_6 . repeat_region 866237 866257 . ? . description=dust scaffold_6 . repeat_region 866237 866257 . ? . description=trf scaffold_6 . biological_region 866486 866487 0.999 - . logic_name=eponine scaffold_6 . biological_region 867667 867670 0.999 + . logic_name=eponine scaffold_6 . biological_region 867721 867731 0.999 - . logic_name=eponine scaffold_6 . biological_region 870132 870135 0.999 + . logic_name=eponine scaffold_6 . repeat_region 870562 870569 . ? . description=dust scaffold_6 . biological_region 872794 872796 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 871830 877187 . + . ID=Physo108342;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60032;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 871830 877187 . + . ID=Physo108342;Parent=Physo108342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 871830 876042 . + 0 ID=Physo108342;Parent=Physo108342;rank=1 scaffold_6 . exon 871830 876042 . + . ID=Physo108342.1;Parent=Physo108342;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 876091 876168 . + 0 ID=Physo108342;Parent=Physo108342;rank=2 scaffold_6 . CDS 876208 876404 . + 0 ID=Physo108342;Parent=Physo108342;rank=3 scaffold_6 . CDS 876594 877187 . + 0 ID=Physo108342;Parent=Physo108342;rank=4 scaffold_6 . exon 864639 864969 . - . ID=Physo129083.1;Parent=Physo129083;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 865746 867808 . + . ID=Physo129084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60241;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 865746 867808 . + . ID=Physo129084;Parent=Physo129084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 865746 867808 . + . ID=Physo129084.1;Parent=Physo129084;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 865916 867808 . + 0 ID=Physo129084;Parent=Physo129084;rank=1 scaffold_6 ensembl protein_coding_gene 868039 868907 . + . ID=Physo129085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60242;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 868039 868907 . + . ID=Physo129085;Parent=Physo129085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 868039 868278 . + 0 ID=Physo129085;Parent=Physo129085;rank=1 scaffold_6 . exon 868039 868278 . + . ID=Physo129085.1;Parent=Physo129085;constitutive=1;rank=1 scaffold_6 . CDS 868347 868907 . + 0 ID=Physo129085;Parent=Physo129085;rank=2 scaffold_6 . exon 868347 868907 . + . ID=Physo129085.2;Parent=Physo129085;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 869077 871652 . - . ID=Physo129086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60243;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 869077 871652 . - . ID=Physo129086;Parent=Physo129086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 869077 869472 . - 0 ID=Physo129086;Parent=Physo129086;rank=5 scaffold_6 . exon 869077 869472 . - . ID=Physo129086.5;Parent=Physo129086;constitutive=1;rank=5 scaffold_6 . CDS 869545 869655 . - 0 ID=Physo129086;Parent=Physo129086;rank=4 scaffold_6 . exon 869545 869655 . - . ID=Physo129086.4;Parent=Physo129086;constitutive=1;rank=4 scaffold_6 . CDS 869728 870487 . - 0 ID=Physo129086;Parent=Physo129086;rank=3 scaffold_6 . exon 869728 870487 . - . ID=Physo129086.3;Parent=Physo129086;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 870572 870965 . - 0 ID=Physo129086;Parent=Physo129086;rank=2 scaffold_6 . exon 870572 870965 . - . ID=Physo129086.2;Parent=Physo129086;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 871044 871629 . - 0 ID=Physo129086;Parent=Physo129086;rank=1 scaffold_6 . exon 871044 871652 . - . ID=Physo129086.1;Parent=Physo129086;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl snRNA_gene 879078 879242 . + . ID=EPrPSOG00000000072;biotype=snRNA;description=U12 minor spliceosomal RNA [Source:RFAM%3BAcc:RF00007];external_name=U12;logic_name=ncrna_eg scaffold_6 ensembl snRNA 879078 879242 . + . ID=EPrPSOT00000000072;Parent=EPrPSOG00000000072;biotype=snRNA;logic_name=ncrna_eg scaffold_6 . exon 879078 879242 . + . ID=EPrPSOE00000000072;Parent=EPrPSOT00000000072;constitutive=1;rank=1 scaffold_6 . exon 876091 876168 . + . ID=Physo108342.2;Parent=Physo108342;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . exon 876208 876404 . + . ID=Physo108342.3;Parent=Physo108342;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . exon 876594 877187 . + . ID=Physo108342.4;Parent=Physo108342;constitutive=1;rank=4 scaffold_6 ensembl protein_coding_gene 877973 878608 . - . ID=Physo129088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60245;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 877973 878608 . - . ID=Physo129088;Parent=Physo129088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 877973 878608 . - 0 ID=Physo129088;Parent=Physo129088;rank=1 scaffold_6 . exon 877973 878608 . - . ID=Physo129088.1;Parent=Physo129088;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 881344 882832 . + . ID=Physo129089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60246;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 881344 882832 . + . ID=Physo129089;Parent=Physo129089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 881344 881373 . + 0 ID=Physo129089;Parent=Physo129089;rank=1 scaffold_6 . exon 881344 881373 . + . ID=Physo129089.1;Parent=Physo129089;constitutive=1;rank=1 scaffold_6 . CDS 881452 881539 . + 0 ID=Physo129089;Parent=Physo129089;rank=2 scaffold_6 . exon 881452 881539 . + . ID=Physo129089.2;Parent=Physo129089;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 881640 881764 . + 0 ID=Physo129089;Parent=Physo129089;rank=3 scaffold_6 . exon 881640 881764 . + . ID=Physo129089.3;Parent=Physo129089;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 881805 881922 . + 0 ID=Physo129089;Parent=Physo129089;rank=4 scaffold_6 . exon 881805 881922 . + . ID=Physo129089.4;Parent=Physo129089;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 881993 882173 . + 0 ID=Physo129089;Parent=Physo129089;rank=5 scaffold_6 . exon 881993 882173 . + . ID=Physo129089.5;Parent=Physo129089;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . CDS 882262 882409 . + 0 ID=Physo129089;Parent=Physo129089;rank=6 scaffold_6 . exon 882262 882409 . + . ID=Physo129089.6;Parent=Physo129089;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 882532 882698 . + 0 ID=Physo129089;Parent=Physo129089;rank=7 scaffold_6 . exon 882532 882698 . + . ID=Physo129089.7;Parent=Physo129089;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_6 . CDS 882784 882832 . + 0 ID=Physo129089;Parent=Physo129089;rank=8 scaffold_6 . exon 882784 882832 . + . ID=Physo129089.8;Parent=Physo129089;constitutive=1;ensembl_phase=2;rank=8 scaffold_6 . biological_region 883895 883896 0.999 - . logic_name=eponine scaffold_6 . biological_region 883950 883951 0.999 + . logic_name=eponine scaffold_6 . biological_region 884063 884064 0.999 - . logic_name=eponine scaffold_6 . biological_region 884246 884248 0.999 - . logic_name=eponine scaffold_6 . repeat_region 884340 884347 . ? . description=dust scaffold_6 . biological_region 884423 884429 0.999 - . logic_name=eponine scaffold_6 . biological_region 884791 884793 0.999 + . logic_name=eponine scaffold_6 . biological_region 885854 885861 0.999 - . logic_name=eponine scaffold_6 . repeat_region 885880 885889 . ? . description=dust scaffold_6 . biological_region 886819 886826 0.999 - . logic_name=eponine scaffold_6 . biological_region 886840 886845 0.999 - . logic_name=eponine scaffold_6 . repeat_region 890139 890151 . ? . description=dust scaffold_6 . repeat_region 890218 890227 . ? . description=dust scaffold_6 . repeat_region 890280 890292 . ? . description=dust scaffold_6 . biological_region 891902 891905 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 888016 889745 . - . ID=Physo111627;biotype=protein_coding;external_name=estExt_Genewise1.C_60219;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 888016 889745 . - . ID=Physo111627;Parent=Physo111627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 888016 888075 . - 0 ID=Physo111627;Parent=Physo111627;rank=9 scaffold_6 . exon 888016 888075 . - . ID=Physo111627.9;Parent=Physo111627;constitutive=1;rank=9 scaffold_6 . CDS 888160 888227 . - 0 ID=Physo111627;Parent=Physo111627;rank=8 scaffold_6 . exon 888160 888227 . - . ID=Physo111627.8;Parent=Physo111627;constitutive=1;ensembl_phase=1;rank=8 scaffold_6 . CDS 888299 888434 . - 0 ID=Physo111627;Parent=Physo111627;rank=7 scaffold_6 . exon 888299 888434 . - . ID=Physo111627.7;Parent=Physo111627;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_6 . CDS 888510 888571 . - 0 ID=Physo111627;Parent=Physo111627;rank=6 scaffold_6 . exon 888510 888571 . - . ID=Physo111627.6;Parent=Physo111627;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 888657 888735 . - 0 ID=Physo111627;Parent=Physo111627;rank=5 scaffold_6 . exon 888657 888735 . - . ID=Physo111627.5;Parent=Physo111627;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_6 . CDS 888813 888953 . - 0 ID=Physo111627;Parent=Physo111627;rank=4 scaffold_6 . exon 888813 888953 . - . ID=Physo111627.4;Parent=Physo111627;constitutive=1;rank=4 scaffold_6 . CDS 889031 889119 . - 0 ID=Physo111627;Parent=Physo111627;rank=3 scaffold_6 . exon 889031 889119 . - . ID=Physo111627.3;Parent=Physo111627;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 889188 889380 . - 0 ID=Physo111627;Parent=Physo111627;rank=2 scaffold_6 . exon 889188 889380 . - . ID=Physo111627.2;Parent=Physo111627;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 889506 889688 . - 0 ID=Physo111627;Parent=Physo111627;rank=1 scaffold_6 . exon 889506 889745 . - . ID=Physo111627.1;Parent=Physo111627;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 884565 885797 . + . ID=Physo129090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60247;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 884565 885797 . + . ID=Physo129090;Parent=Physo129090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 884565 885797 . + 0 ID=Physo129090;Parent=Physo129090;rank=1 scaffold_6 . exon 884565 885797 . + . ID=Physo129090.1;Parent=Physo129090;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 886069 886965 . - . ID=Physo129091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60248;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 886069 886965 . - . ID=Physo129091;Parent=Physo129091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 886069 886965 . - 0 ID=Physo129091;Parent=Physo129091;rank=1 scaffold_6 . exon 886069 886965 . - . ID=Physo129091.1;Parent=Physo129091;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 890628 893351 . - . ID=Physo129093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60250;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 890628 893351 . - . ID=Physo129093;Parent=Physo129093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 890628 893351 . - 0 ID=Physo129093;Parent=Physo129093;rank=1 scaffold_6 . exon 890628 893351 . - . ID=Physo129093.1;Parent=Physo129093;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 893859 894596 . - . ID=Physo108343;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60033;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 893859 894596 . - . ID=Physo108343;Parent=Physo108343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 893859 893963 . - 0 ID=Physo108343;Parent=Physo108343;rank=4 scaffold_6 . exon 893859 893963 . - . ID=Physo108343.4;Parent=Physo108343;constitutive=1;rank=4 scaffold_6 . CDS 894034 894111 . - 0 ID=Physo108343;Parent=Physo108343;rank=3 scaffold_6 . exon 894034 894111 . - . ID=Physo108343.3;Parent=Physo108343;constitutive=1;rank=3 scaffold_6 . CDS 894184 894416 . - 0 ID=Physo108343;Parent=Physo108343;rank=2 scaffold_6 . exon 894184 894416 . - . ID=Physo108343.2;Parent=Physo108343;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 894494 894596 . - 0 ID=Physo108343;Parent=Physo108343;rank=1 scaffold_6 . exon 894494 894596 . - . ID=Physo108343.1;Parent=Physo108343;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 894999 898745 . - . ID=Physo155624;biotype=protein_coding;external_name=C_scaffold_6000055;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 894999 898745 . - . ID=Physo155624;Parent=Physo155624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 894999 895193 . - 0 ID=Physo155624;Parent=Physo155624;rank=8 scaffold_6 . exon 894999 895193 . - . ID=Physo155624.8;Parent=Physo155624;constitutive=1;rank=8 scaffold_6 . CDS 895221 896440 . - 0 ID=Physo155624;Parent=Physo155624;rank=7 scaffold_6 . exon 895221 896440 . - . ID=Physo155624.7;Parent=Physo155624;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 896840 897038 . - 0 ID=Physo155624;Parent=Physo155624;rank=6 scaffold_6 . exon 896840 897038 . - . ID=Physo155624.6;Parent=Physo155624;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_6 . CDS 897118 897235 . - 0 ID=Physo155624;Parent=Physo155624;rank=5 scaffold_6 . exon 897118 897235 . - . ID=Physo155624.5;Parent=Physo155624;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 897311 897504 . - 0 ID=Physo155624;Parent=Physo155624;rank=4 scaffold_6 . exon 897311 897504 . - . ID=Physo155624.4;Parent=Physo155624;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 897587 897760 . - 0 ID=Physo155624;Parent=Physo155624;rank=3 scaffold_6 . exon 897587 897760 . - . ID=Physo155624.3;Parent=Physo155624;constitutive=1;rank=3 scaffold_6 . CDS 897840 898176 . - 0 ID=Physo155624;Parent=Physo155624;rank=2 scaffold_6 . exon 897840 898176 . - . ID=Physo155624.2;Parent=Physo155624;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 898207 898745 . - 0 ID=Physo155624;Parent=Physo155624;rank=1 scaffold_6 . exon 898207 898745 . - . ID=Physo155624.1;Parent=Physo155624;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 899101 901078 . + . ID=Physo155627;biotype=protein_coding;external_name=C_scaffold_6000058;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 899101 901078 . + . ID=Physo155627;Parent=Physo155627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 899101 899291 . + 0 ID=Physo155627;Parent=Physo155627;rank=1 scaffold_6 . exon 899101 899291 . + . ID=Physo155627.1;Parent=Physo155627;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 899325 899740 . + 0 ID=Physo155627;Parent=Physo155627;rank=2 scaffold_6 . exon 899325 899740 . + . ID=Physo155627.2;Parent=Physo155627;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 900056 900182 . + 0 ID=Physo155627;Parent=Physo155627;rank=3 scaffold_6 . exon 900056 900182 . + . ID=Physo155627.3;Parent=Physo155627;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_6 . CDS 900231 900560 . + 0 ID=Physo155627;Parent=Physo155627;rank=4 scaffold_6 . exon 900231 900560 . + . ID=Physo155627.4;Parent=Physo155627;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_6 . CDS 900747 900885 . + 0 ID=Physo155627;Parent=Physo155627;rank=5 scaffold_6 . exon 900747 900885 . + . ID=Physo155627.5;Parent=Physo155627;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 900974 901078 . + 0 ID=Physo155627;Parent=Physo155627;rank=6 scaffold_6 . exon 900974 901078 . + . ID=Physo155627.6;Parent=Physo155627;constitutive=1;rank=6 scaffold_6 ensembl protein_coding_gene 911419 913248 . + . ID=Physo155628;biotype=protein_coding;external_name=C_scaffold_6000059;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 911419 913248 . + . ID=Physo155628;Parent=Physo155628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 911419 911701 . + 0 ID=Physo155628;Parent=Physo155628;rank=1 scaffold_6 . exon 911419 911701 . + . ID=Physo155628.1;Parent=Physo155628;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 911759 913248 . + 0 ID=Physo155628;Parent=Physo155628;rank=2 scaffold_6 . exon 911759 913248 . + . ID=Physo155628.2;Parent=Physo155628;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 913326 914899 . - . ID=Physo155629;biotype=protein_coding;external_name=C_scaffold_6000060;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 913326 914899 . - . ID=Physo155629;Parent=Physo155629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 913326 913389 . - 0 ID=Physo155629;Parent=Physo155629;rank=8 scaffold_6 . exon 913326 913389 . - . ID=Physo155629.8;Parent=Physo155629;constitutive=1;ensembl_phase=2;rank=8 scaffold_6 . CDS 913450 913586 . - 0 ID=Physo155629;Parent=Physo155629;rank=7 scaffold_6 . exon 913450 913586 . - . ID=Physo155629.7;Parent=Physo155629;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_6 . CDS 913666 913750 . - 0 ID=Physo155629;Parent=Physo155629;rank=6 scaffold_6 . CDS 913838 913984 . - 0 ID=Physo155629;Parent=Physo155629;rank=5 scaffold_6 . CDS 914048 914169 . - 0 ID=Physo155629;Parent=Physo155629;rank=4 scaffold_6 . CDS 914265 914350 . - 0 ID=Physo155629;Parent=Physo155629;rank=3 scaffold_6 . CDS 914428 914524 . - 0 ID=Physo155629;Parent=Physo155629;rank=2 scaffold_6 . CDS 914612 914899 . - 0 ID=Physo155629;Parent=Physo155629;rank=1 scaffold_6 . biological_region 914702 914708 0.999 + . logic_name=eponine scaffold_6 . repeat_region 915218 915263 . ? . description=trf scaffold_6 . biological_region 918971 918971 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 918385 922125 . - . ID=Physo108344;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60034;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 918385 922125 . - . ID=Physo108344;Parent=Physo108344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 918385 918970 . - 0 ID=Physo108344;Parent=Physo108344;rank=3 scaffold_6 . exon 918385 918970 . - . ID=Physo108344.3;Parent=Physo108344;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 919043 920577 . - 0 ID=Physo108344;Parent=Physo108344;rank=2 scaffold_6 . exon 919043 920577 . - . ID=Physo108344.2;Parent=Physo108344;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 922093 922125 . - 0 ID=Physo108344;Parent=Physo108344;rank=1 scaffold_6 . exon 922093 922125 . - . ID=Physo108344.1;Parent=Physo108344;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 915109 918208 . + . ID=Physo129100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60257;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 915109 918208 . + . ID=Physo129100;Parent=Physo129100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 915109 915535 . + 0 ID=Physo129100;Parent=Physo129100;rank=1 scaffold_6 . exon 915109 915535 . + . ID=Physo129100.1;Parent=Physo129100;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 915624 915727 . + 0 ID=Physo129100;Parent=Physo129100;rank=2 scaffold_6 . exon 915624 915727 . + . ID=Physo129100.2;Parent=Physo129100;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 915804 915925 . + 0 ID=Physo129100;Parent=Physo129100;rank=3 scaffold_6 . exon 915804 915925 . + . ID=Physo129100.3;Parent=Physo129100;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 915998 916073 . + 0 ID=Physo129100;Parent=Physo129100;rank=4 scaffold_6 . exon 915998 916073 . + . ID=Physo129100.4;Parent=Physo129100;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 916161 916233 . + 0 ID=Physo129100;Parent=Physo129100;rank=5 scaffold_6 . exon 916161 916233 . + . ID=Physo129100.5;Parent=Physo129100;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_6 . CDS 916308 916472 . + 0 ID=Physo129100;Parent=Physo129100;rank=6 scaffold_6 . exon 916308 916472 . + . ID=Physo129100.6;Parent=Physo129100;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 916551 916614 . + 0 ID=Physo129100;Parent=Physo129100;rank=7 scaffold_6 . exon 916551 916614 . + . ID=Physo129100.7;Parent=Physo129100;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_6 . CDS 916691 916862 . + 0 ID=Physo129100;Parent=Physo129100;rank=8 scaffold_6 . exon 916691 916862 . + . ID=Physo129100.8;Parent=Physo129100;constitutive=1;ensembl_phase=2;rank=8 scaffold_6 . CDS 917244 917444 . + 0 ID=Physo129100;Parent=Physo129100;rank=9 scaffold_6 . exon 917244 917444 . + . ID=Physo129100.9;Parent=Physo129100;constitutive=1;rank=9 scaffold_6 . CDS 917517 917615 . + 0 ID=Physo129100;Parent=Physo129100;rank=10 scaffold_6 . exon 917517 917615 . + . ID=Physo129100.10;Parent=Physo129100;constitutive=1;rank=10 scaffold_6 . CDS 917691 917925 . + 0 ID=Physo129100;Parent=Physo129100;rank=11 scaffold_6 . exon 917691 917925 . + . ID=Physo129100.11;Parent=Physo129100;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_6 . CDS 917994 918208 . + 0 ID=Physo129100;Parent=Physo129100;rank=12 scaffold_6 . exon 917994 918208 . + . ID=Physo129100.12;Parent=Physo129100;constitutive=1;ensembl_phase=1;rank=12 scaffold_6 ensembl protein_coding_gene 922314 923061 . - . ID=Physo129102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60259;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 922314 923061 . - . ID=Physo129102;Parent=Physo129102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 922314 923061 . - . ID=Physo129102.1;Parent=Physo129102;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . CDS 922315 923061 . - 0 ID=Physo129102;Parent=Physo129102;rank=1 scaffold_6 . exon 913666 913750 . - . ID=Physo155629.6;Parent=Physo155629;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . exon 913838 913984 . - . ID=Physo155629.5;Parent=Physo155629;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_6 . exon 914048 914169 . - . ID=Physo155629.4;Parent=Physo155629;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . exon 914265 914350 . - . ID=Physo155629.3;Parent=Physo155629;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . exon 914428 914524 . - . ID=Physo155629.2;Parent=Physo155629;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . exon 914612 914899 . - . ID=Physo155629.1;Parent=Physo155629;constitutive=1;rank=1 scaffold_6 . repeat_region 927842 927867 . ? . description=dust scaffold_6 . repeat_region 928518 928536 . ? . description=dust scaffold_6 . repeat_region 930317 930324 . ? . description=dust scaffold_6 ensembl protein_coding_gene 928145 929317 . + . ID=Physo108345;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60035;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 928145 929317 . + . ID=Physo108345;Parent=Physo108345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 928145 928511 . + . ID=Physo108345.1;Parent=Physo108345;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 928385 928511 . + 0 ID=Physo108345;Parent=Physo108345;rank=1 scaffold_6 . CDS 928684 928761 . + 0 ID=Physo108345;Parent=Physo108345;rank=2 scaffold_6 . exon 928684 928761 . + . ID=Physo108345.2;Parent=Physo108345;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 928858 928934 . + 0 ID=Physo108345;Parent=Physo108345;rank=3 scaffold_6 . exon 928858 928934 . + . ID=Physo108345.3;Parent=Physo108345;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 929006 929317 . + 0 ID=Physo108345;Parent=Physo108345;rank=4 scaffold_6 . exon 929006 929317 . + . ID=Physo108345.4;Parent=Physo108345;constitutive=1;rank=4 scaffold_6 ensembl protein_coding_gene 929666 930634 . - . ID=Physo129106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60263;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 929666 930634 . - . ID=Physo129106;Parent=Physo129106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 929666 930248 . - . ID=Physo129106.2;Parent=Physo129106;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_6 . CDS 929937 930248 . - 0 ID=Physo129106;Parent=Physo129106;rank=2 scaffold_6 . CDS 930374 930535 . - 0 ID=Physo129106;Parent=Physo129106;rank=1 scaffold_6 . exon 930374 930634 . - . ID=Physo129106.1;Parent=Physo129106;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 925098 925982 . - . ID=Physo155630;biotype=protein_coding;external_name=C_scaffold_6000061;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 925098 925982 . - . ID=Physo155630;Parent=Physo155630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 925098 925115 . - 0 ID=Physo155630;Parent=Physo155630;rank=6 scaffold_6 . exon 925098 925115 . - . ID=Physo155630.6;Parent=Physo155630;constitutive=1;rank=6 scaffold_6 . CDS 925207 925332 . - 0 ID=Physo155630;Parent=Physo155630;rank=5 scaffold_6 . exon 925207 925332 . - . ID=Physo155630.5;Parent=Physo155630;constitutive=1;rank=5 scaffold_6 . CDS 925410 925497 . - 0 ID=Physo155630;Parent=Physo155630;rank=4 scaffold_6 . exon 925410 925497 . - . ID=Physo155630.4;Parent=Physo155630;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 925580 925643 . - 0 ID=Physo155630;Parent=Physo155630;rank=3 scaffold_6 . exon 925580 925643 . - . ID=Physo155630.3;Parent=Physo155630;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_6 . CDS 925738 925856 . - 0 ID=Physo155630;Parent=Physo155630;rank=2 scaffold_6 . exon 925738 925856 . - . ID=Physo155630.2;Parent=Physo155630;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 925948 925982 . - 0 ID=Physo155630;Parent=Physo155630;rank=1 scaffold_6 . exon 925948 925982 . - . ID=Physo155630.1;Parent=Physo155630;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 926316 927821 . + . ID=Physo155631;biotype=protein_coding;external_name=C_scaffold_6000062;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 926316 927821 . + . ID=Physo155631;Parent=Physo155631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 926316 926514 . + 0 ID=Physo155631;Parent=Physo155631;rank=1 scaffold_6 . exon 926316 926514 . + . ID=Physo155631.1;Parent=Physo155631;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 926606 926876 . + 0 ID=Physo155631;Parent=Physo155631;rank=2 scaffold_6 . exon 926606 926876 . + . ID=Physo155631.2;Parent=Physo155631;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 926973 927132 . + 0 ID=Physo155631;Parent=Physo155631;rank=3 scaffold_6 . exon 926973 927132 . + . ID=Physo155631.3;Parent=Physo155631;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 927197 927340 . + 0 ID=Physo155631;Parent=Physo155631;rank=4 scaffold_6 . exon 927197 927340 . + . ID=Physo155631.4;Parent=Physo155631;constitutive=1;rank=4 scaffold_6 . CDS 927414 927821 . + 0 ID=Physo155631;Parent=Physo155631;rank=5 scaffold_6 . exon 927414 927821 . + . ID=Physo155631.5;Parent=Physo155631;constitutive=1;rank=5 scaffold_6 ensembl protein_coding_gene 932482 936789 . + . ID=Physo155634;biotype=protein_coding;external_name=C_scaffold_6000065;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 932482 936789 . + . ID=Physo155634;Parent=Physo155634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 932482 932834 . + 0 ID=Physo155634;Parent=Physo155634;rank=1 scaffold_6 . exon 932482 932834 . + . ID=Physo155634.1;Parent=Physo155634;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 932877 933514 . + 0 ID=Physo155634;Parent=Physo155634;rank=2 scaffold_6 . exon 932877 933514 . + . ID=Physo155634.2;Parent=Physo155634;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 933542 935188 . + 0 ID=Physo155634;Parent=Physo155634;rank=3 scaffold_6 . CDS 935429 935506 . + 0 ID=Physo155634;Parent=Physo155634;rank=4 scaffold_6 . CDS 935894 936650 . + 0 ID=Physo155634;Parent=Physo155634;rank=5 scaffold_6 . CDS 936730 936766 . + 0 ID=Physo155634;Parent=Physo155634;rank=6 scaffold_6 . CDS 936787 936789 . + 0 ID=Physo155634;Parent=Physo155634;rank=7 scaffold_6 . repeat_region 937532 937570 . ? . description=trf scaffold_6 . biological_region 939726 939728 0.999 + . logic_name=eponine scaffold_6 . biological_region 939749 939754 0.999 + . logic_name=eponine scaffold_6 . biological_region 939781 939784 0.999 + . logic_name=eponine scaffold_6 . biological_region 939797 939799 0.999 - . logic_name=eponine scaffold_6 . biological_region 939797 939800 0.999 + . logic_name=eponine scaffold_6 . biological_region 939805 939808 0.999 + . logic_name=eponine scaffold_6 . biological_region 939851 939855 0.999 + . logic_name=eponine scaffold_6 . biological_region 939890 939896 0.999 - . logic_name=eponine scaffold_6 . biological_region 939914 939919 0.999 - . logic_name=eponine scaffold_6 . biological_region 941287 941289 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 940025 943941 . - . ID=Physo108346;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60036;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 940025 943941 . - . ID=Physo108346;Parent=Physo108346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 940025 941290 . - . ID=Physo108346.2;Parent=Physo108346;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_6 . CDS 940133 941290 . - 0 ID=Physo108346;Parent=Physo108346;rank=2 scaffold_6 . CDS 941366 943867 . - 0 ID=Physo108346;Parent=Physo108346;rank=1 scaffold_6 . exon 941366 943941 . - . ID=Physo108346.1;Parent=Physo108346;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 939490 939900 . - . ID=Physo129108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60265;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 939490 939900 . - . ID=Physo129108;Parent=Physo129108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 939490 939900 . - 0 ID=Physo129108;Parent=Physo129108;rank=1 scaffold_6 . exon 939490 939900 . - . ID=Physo129108.1;Parent=Physo129108;constitutive=1;rank=1 scaffold_6 . exon 933542 935188 . + . ID=Physo155634.3;Parent=Physo155634;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . exon 935429 935506 . + . ID=Physo155634.4;Parent=Physo155634;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . exon 935894 936650 . + . ID=Physo155634.5;Parent=Physo155634;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . exon 936730 936766 . + . ID=Physo155634.6;Parent=Physo155634;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . exon 936787 936789 . + . ID=Physo155634.7;Parent=Physo155634;constitutive=1;rank=7 scaffold_6 ensembl protein_coding_gene 936873 937055 . - . ID=Physo155635;biotype=protein_coding;external_name=C_scaffold_6000066;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 936873 937055 . - . ID=Physo155635;Parent=Physo155635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 936873 937055 . - 0 ID=Physo155635;Parent=Physo155635;rank=1 scaffold_6 . exon 936873 937055 . - . ID=Physo155635.1;Parent=Physo155635;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 944339 945091 . + . ID=Physo129110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60267;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 944339 945091 . + . ID=Physo129110;Parent=Physo129110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 944339 944510 . + 0 ID=Physo129110;Parent=Physo129110;rank=1 scaffold_6 . exon 944339 944510 . + . ID=Physo129110.1;Parent=Physo129110;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 944587 944661 . + 0 ID=Physo129110;Parent=Physo129110;rank=2 scaffold_6 . exon 944587 944661 . + . ID=Physo129110.2;Parent=Physo129110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 944771 945084 . + 0 ID=Physo129110;Parent=Physo129110;rank=3 scaffold_6 . exon 944771 945091 . + . ID=Physo129110.3;Parent=Physo129110;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_6 ensembl protein_coding_gene 945227 947461 . - . ID=Physo129111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60268;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 945227 947461 . - . ID=Physo129111;Parent=Physo129111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 945227 945435 . - 0 ID=Physo129111;Parent=Physo129111;rank=4 scaffold_6 . exon 945227 945435 . - . ID=Physo129111.4;Parent=Physo129111;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 945606 945665 . - 0 ID=Physo129111;Parent=Physo129111;rank=3 scaffold_6 . exon 945606 945665 . - . ID=Physo129111.3;Parent=Physo129111;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 945851 947174 . - 0 ID=Physo129111;Parent=Physo129111;rank=2 scaffold_6 . exon 945851 947174 . - . ID=Physo129111.2;Parent=Physo129111;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 947264 947461 . - 0 ID=Physo129111;Parent=Physo129111;rank=1 scaffold_6 . exon 947264 947461 . - . ID=Physo129111.1;Parent=Physo129111;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 948058 949695 . + . ID=Physo155637;biotype=protein_coding;external_name=C_scaffold_6000068;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 948058 949695 . + . ID=Physo155637;Parent=Physo155637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 948058 948511 . + 0 ID=Physo155637;Parent=Physo155637;rank=1 scaffold_6 . exon 948058 948511 . + . ID=Physo155637.1;Parent=Physo155637;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 948563 949695 . + 0 ID=Physo155637;Parent=Physo155637;rank=2 scaffold_6 . exon 948563 949695 . + . ID=Physo155637.2;Parent=Physo155637;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 949925 951546 . + . ID=Physo155638;biotype=protein_coding;external_name=C_scaffold_6000069;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 949925 951546 . + . ID=Physo155638;Parent=Physo155638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 949925 949984 . + 0 ID=Physo155638;Parent=Physo155638;rank=1 scaffold_6 . exon 949925 949984 . + . ID=Physo155638.1;Parent=Physo155638;constitutive=1;rank=1 scaffold_6 . CDS 950039 950395 . + 0 ID=Physo155638;Parent=Physo155638;rank=2 scaffold_6 . exon 950039 950395 . + . ID=Physo155638.2;Parent=Physo155638;constitutive=1;rank=2 scaffold_6 . CDS 950472 950636 . + 0 ID=Physo155638;Parent=Physo155638;rank=3 scaffold_6 . exon 950472 950636 . + . ID=Physo155638.3;Parent=Physo155638;constitutive=1;rank=3 scaffold_6 . CDS 950708 950996 . + 0 ID=Physo155638;Parent=Physo155638;rank=4 scaffold_6 . exon 950708 950996 . + . ID=Physo155638.4;Parent=Physo155638;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 951021 951154 . + 0 ID=Physo155638;Parent=Physo155638;rank=5 scaffold_6 . exon 951021 951154 . + . ID=Physo155638.5;Parent=Physo155638;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 951341 951492 . + 0 ID=Physo155638;Parent=Physo155638;rank=6 scaffold_6 . exon 951341 951492 . + . ID=Physo155638.6;Parent=Physo155638;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_6 . CDS 951528 951546 . + 0 ID=Physo155638;Parent=Physo155638;rank=7 scaffold_6 . exon 951528 951546 . + . ID=Physo155638.7;Parent=Physo155638;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 ensembl protein_coding_gene 952132 953256 . - . ID=Physo155639;biotype=protein_coding;external_name=C_scaffold_6000070;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 952132 953256 . - . ID=Physo155639;Parent=Physo155639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 952132 952313 . - 0 ID=Physo155639;Parent=Physo155639;rank=5 scaffold_6 . exon 952132 952313 . - . ID=Physo155639.5;Parent=Physo155639;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 952388 952487 . - 0 ID=Physo155639;Parent=Physo155639;rank=4 scaffold_6 . exon 952388 952487 . - . ID=Physo155639.4;Parent=Physo155639;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 952569 952678 . - 0 ID=Physo155639;Parent=Physo155639;rank=3 scaffold_6 . exon 952569 952678 . - . ID=Physo155639.3;Parent=Physo155639;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 952756 953066 . - 0 ID=Physo155639;Parent=Physo155639;rank=2 scaffold_6 . exon 952756 953066 . - . ID=Physo155639.2;Parent=Physo155639;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 953153 953256 . - 0 ID=Physo155639;Parent=Physo155639;rank=1 scaffold_6 . exon 953153 953256 . - . ID=Physo155639.1;Parent=Physo155639;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . repeat_region 958633 958641 . ? . description=dust scaffold_6 . biological_region 959684 959685 0.999 - . logic_name=eponine scaffold_6 . repeat_region 959929 959939 . ? . description=dust scaffold_6 . biological_region 959960 959964 0.999 + . logic_name=eponine scaffold_6 . biological_region 960010 960014 0.999 + . logic_name=eponine scaffold_6 . biological_region 960074 960078 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 959997 961047 . + . ID=Physo129118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60275;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 959997 961047 . + . ID=Physo129118;Parent=Physo129118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 959997 960145 . + 0 ID=Physo129118;Parent=Physo129118;rank=1 scaffold_6 . exon 959997 960145 . + . ID=Physo129118.1;Parent=Physo129118;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 960216 960304 . + 0 ID=Physo129118;Parent=Physo129118;rank=2 scaffold_6 . exon 960216 960304 . + . ID=Physo129118.2;Parent=Physo129118;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 960383 960621 . + 0 ID=Physo129118;Parent=Physo129118;rank=3 scaffold_6 . exon 960383 960621 . + . ID=Physo129118.3;Parent=Physo129118;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 960714 960870 . + 0 ID=Physo129118;Parent=Physo129118;rank=4 scaffold_6 . exon 960714 960870 . + . ID=Physo129118.4;Parent=Physo129118;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 960938 961047 . + 0 ID=Physo129118;Parent=Physo129118;rank=5 scaffold_6 . exon 960938 961047 . + . ID=Physo129118.5;Parent=Physo129118;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 ensembl protein_coding_gene 962985 963398 . + . ID=Physo129119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60276;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 962985 963398 . + . ID=Physo129119;Parent=Physo129119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 962985 963398 . + 0 ID=Physo129119;Parent=Physo129119;rank=1 scaffold_6 . exon 962985 963398 . + . ID=Physo129119.1;Parent=Physo129119;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 954106 957044 . + . ID=Physo155640;biotype=protein_coding;external_name=C_scaffold_6000071;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 954106 957044 . + . ID=Physo155640;Parent=Physo155640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 954106 954252 . + 0 ID=Physo155640;Parent=Physo155640;rank=1 scaffold_6 . exon 954106 954252 . + . ID=Physo155640.1;Parent=Physo155640;constitutive=1;rank=1 scaffold_6 . CDS 954414 954464 . + 0 ID=Physo155640;Parent=Physo155640;rank=2 scaffold_6 . exon 954414 954464 . + . ID=Physo155640.2;Parent=Physo155640;constitutive=1;rank=2 scaffold_6 . CDS 954543 954644 . + 0 ID=Physo155640;Parent=Physo155640;rank=3 scaffold_6 . exon 954543 954644 . + . ID=Physo155640.3;Parent=Physo155640;constitutive=1;rank=3 scaffold_6 . CDS 954870 954955 . + 0 ID=Physo155640;Parent=Physo155640;rank=4 scaffold_6 . exon 954870 954955 . + . ID=Physo155640.4;Parent=Physo155640;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 955035 955152 . + 0 ID=Physo155640;Parent=Physo155640;rank=5 scaffold_6 . exon 955035 955152 . + . ID=Physo155640.5;Parent=Physo155640;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 955204 955294 . + 0 ID=Physo155640;Parent=Physo155640;rank=6 scaffold_6 . exon 955204 955294 . + . ID=Physo155640.6;Parent=Physo155640;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_6 . CDS 955410 955503 . + 0 ID=Physo155640;Parent=Physo155640;rank=7 scaffold_6 . exon 955410 955503 . + . ID=Physo155640.7;Parent=Physo155640;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_6 . CDS 955609 955929 . + 0 ID=Physo155640;Parent=Physo155640;rank=8 scaffold_6 . exon 955609 955929 . + . ID=Physo155640.8;Parent=Physo155640;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_6 . CDS 956000 956222 . + 0 ID=Physo155640;Parent=Physo155640;rank=9 scaffold_6 . exon 956000 956222 . + . ID=Physo155640.9;Parent=Physo155640;constitutive=1;ensembl_phase=2;rank=9 scaffold_6 . CDS 956300 956380 . + 0 ID=Physo155640;Parent=Physo155640;rank=10 scaffold_6 . exon 956300 956380 . + . ID=Physo155640.10;Parent=Physo155640;constitutive=1;rank=10 scaffold_6 . CDS 956454 957044 . + 0 ID=Physo155640;Parent=Physo155640;rank=11 scaffold_6 . exon 956454 957044 . + . ID=Physo155640.11;Parent=Physo155640;constitutive=1;rank=11 scaffold_6 ensembl protein_coding_gene 957107 959125 . - . ID=Physo155641;biotype=protein_coding;external_name=C_scaffold_6000072;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 957107 959125 . - . ID=Physo155641;Parent=Physo155641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 957107 957250 . - 0 ID=Physo155641;Parent=Physo155641;rank=11 scaffold_6 . exon 957107 957250 . - . ID=Physo155641.11;Parent=Physo155641;constitutive=1;rank=11 scaffold_6 . CDS 957327 957479 . - 0 ID=Physo155641;Parent=Physo155641;rank=10 scaffold_6 . exon 957327 957479 . - . ID=Physo155641.10;Parent=Physo155641;constitutive=1;rank=10 scaffold_6 . CDS 957551 957697 . - 0 ID=Physo155641;Parent=Physo155641;rank=9 scaffold_6 . exon 957551 957697 . - . ID=Physo155641.9;Parent=Physo155641;constitutive=1;rank=9 scaffold_6 . CDS 957763 957831 . - 0 ID=Physo155641;Parent=Physo155641;rank=8 scaffold_6 . exon 957763 957831 . - . ID=Physo155641.8;Parent=Physo155641;constitutive=1;rank=8 scaffold_6 . CDS 957900 957947 . - 0 ID=Physo155641;Parent=Physo155641;rank=7 scaffold_6 . exon 957900 957947 . - . ID=Physo155641.7;Parent=Physo155641;constitutive=1;rank=7 scaffold_6 . CDS 958022 958195 . - 0 ID=Physo155641;Parent=Physo155641;rank=6 scaffold_6 . exon 958022 958195 . - . ID=Physo155641.6;Parent=Physo155641;constitutive=1;rank=6 scaffold_6 . CDS 958269 958433 . - 0 ID=Physo155641;Parent=Physo155641;rank=5 scaffold_6 . exon 958269 958433 . - . ID=Physo155641.5;Parent=Physo155641;constitutive=1;rank=5 scaffold_6 . CDS 958513 958584 . - 0 ID=Physo155641;Parent=Physo155641;rank=4 scaffold_6 . exon 958513 958584 . - . ID=Physo155641.4;Parent=Physo155641;constitutive=1;rank=4 scaffold_6 . CDS 958647 958741 . - 0 ID=Physo155641;Parent=Physo155641;rank=3 scaffold_6 . exon 958647 958741 . - . ID=Physo155641.3;Parent=Physo155641;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 958815 958911 . - 0 ID=Physo155641;Parent=Physo155641;rank=2 scaffold_6 . exon 958815 958911 . - . ID=Physo155641.2;Parent=Physo155641;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 959012 959125 . - 0 ID=Physo155641;Parent=Physo155641;rank=1 scaffold_6 . exon 959012 959125 . - . ID=Physo155641.1;Parent=Physo155641;constitutive=1;rank=1 scaffold_6 . repeat_region 972069 972094 . ? . description=trf scaffold_6 ensembl protein_coding_gene 972287 973306 . - . ID=Physo111659;biotype=protein_coding;external_name=estExt_Genewise1.C_60251;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 972287 973306 . - . ID=Physo111659;Parent=Physo111659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 972287 973306 . - 0 ID=Physo111659;Parent=Physo111659;rank=1 scaffold_6 . exon 972287 973306 . - . ID=Physo111659.1;Parent=Physo111659;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 970810 971570 . - . ID=Physo129122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60279;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 970810 971570 . - . ID=Physo129122;Parent=Physo129122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 970810 970895 . - 0 ID=Physo129122;Parent=Physo129122;rank=3 scaffold_6 . exon 970810 970895 . - . ID=Physo129122.3;Parent=Physo129122;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 970969 971295 . - 0 ID=Physo129122;Parent=Physo129122;rank=2 scaffold_6 . exon 970969 971295 . - . ID=Physo129122.2;Parent=Physo129122;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 971393 971570 . - 0 ID=Physo129122;Parent=Physo129122;rank=1 scaffold_6 . exon 971393 971570 . - . ID=Physo129122.1;Parent=Physo129122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 964680 967277 . + . ID=Physo155642;biotype=protein_coding;external_name=C_scaffold_6000073;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 964680 967277 . + . ID=Physo155642;Parent=Physo155642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 964680 964684 . + 0 ID=Physo155642;Parent=Physo155642;rank=1 scaffold_6 . exon 964680 964684 . + . ID=Physo155642.1;Parent=Physo155642;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 964965 965040 . + 0 ID=Physo155642;Parent=Physo155642;rank=2 scaffold_6 . exon 964965 965040 . + . ID=Physo155642.2;Parent=Physo155642;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 965458 965573 . + 0 ID=Physo155642;Parent=Physo155642;rank=3 scaffold_6 . exon 965458 965573 . + . ID=Physo155642.3;Parent=Physo155642;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 965896 966123 . + 0 ID=Physo155642;Parent=Physo155642;rank=4 scaffold_6 . exon 965896 966123 . + . ID=Physo155642.4;Parent=Physo155642;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_6 . CDS 966191 966255 . + 0 ID=Physo155642;Parent=Physo155642;rank=5 scaffold_6 . exon 966191 966255 . + . ID=Physo155642.5;Parent=Physo155642;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 966298 966401 . + 0 ID=Physo155642;Parent=Physo155642;rank=6 scaffold_6 . exon 966298 966401 . + . ID=Physo155642.6;Parent=Physo155642;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 966475 966705 . + 0 ID=Physo155642;Parent=Physo155642;rank=7 scaffold_6 . exon 966475 966705 . + . ID=Physo155642.7;Parent=Physo155642;constitutive=1;rank=7 scaffold_6 . CDS 966778 966957 . + 0 ID=Physo155642;Parent=Physo155642;rank=8 scaffold_6 . exon 966778 966957 . + . ID=Physo155642.8;Parent=Physo155642;constitutive=1;rank=8 scaffold_6 . CDS 967032 967277 . + 0 ID=Physo155642;Parent=Physo155642;rank=9 scaffold_6 . exon 967032 967277 . + . ID=Physo155642.9;Parent=Physo155642;constitutive=1;rank=9 scaffold_6 ensembl protein_coding_gene 967477 968896 . + . ID=Physo155644;biotype=protein_coding;external_name=C_scaffold_6000075;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 967477 968896 . + . ID=Physo155644;Parent=Physo155644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 967477 967651 . + 0 ID=Physo155644;Parent=Physo155644;rank=1 scaffold_6 . exon 967477 967651 . + . ID=Physo155644.1;Parent=Physo155644;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 967726 968204 . + 0 ID=Physo155644;Parent=Physo155644;rank=2 scaffold_6 . exon 967726 968204 . + . ID=Physo155644.2;Parent=Physo155644;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 968442 968682 . + 0 ID=Physo155644;Parent=Physo155644;rank=3 scaffold_6 . exon 968442 968682 . + . ID=Physo155644.3;Parent=Physo155644;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 968752 968854 . + 0 ID=Physo155644;Parent=Physo155644;rank=4 scaffold_6 . exon 968752 968854 . + . ID=Physo155644.4;Parent=Physo155644;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_6 . CDS 968893 968896 . + 0 ID=Physo155644;Parent=Physo155644;rank=5 scaffold_6 . exon 968893 968896 . + . ID=Physo155644.5;Parent=Physo155644;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 ensembl protein_coding_gene 969626 969910 . - . ID=Physo155646;biotype=protein_coding;external_name=C_scaffold_6000077;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 969626 969910 . - . ID=Physo155646;Parent=Physo155646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 969626 969910 . - 0 ID=Physo155646;Parent=Physo155646;rank=1 scaffold_6 . exon 969626 969910 . - . ID=Physo155646.1;Parent=Physo155646;constitutive=1;rank=1 scaffold_6 . biological_region 977890 977890 0.999 + . logic_name=eponine scaffold_6 . repeat_region 982473 982520 . ? . description=dust scaffold_6 ensembl protein_coding_gene 973618 976604 . + . ID=Physo111665;biotype=protein_coding;external_name=estExt_Genewise1.C_60257;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 973618 976604 . + . ID=Physo111665;Parent=Physo111665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 973618 974494 . + . ID=Physo111665.1;Parent=Physo111665;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . exon 974578 974777 . + . ID=Physo111665.2;Parent=Physo111665;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_6 . exon 974886 975277 . + . ID=Physo111665.3;Parent=Physo111665;constitutive=1;ensembl_phase=-1;rank=3 scaffold_6 . CDS 974909 975277 . + 0 ID=Physo111665;Parent=Physo111665;rank=1 scaffold_6 . CDS 975348 975479 . + 0 ID=Physo111665;Parent=Physo111665;rank=2 scaffold_6 . exon 975348 975479 . + . ID=Physo111665.4;Parent=Physo111665;constitutive=1;rank=4 scaffold_6 . CDS 975568 975720 . + 0 ID=Physo111665;Parent=Physo111665;rank=3 scaffold_6 . exon 975568 975720 . + . ID=Physo111665.5;Parent=Physo111665;constitutive=1;rank=5 scaffold_6 . CDS 975794 976111 . + 0 ID=Physo111665;Parent=Physo111665;rank=4 scaffold_6 . exon 975794 976111 . + . ID=Physo111665.6;Parent=Physo111665;constitutive=1;rank=6 scaffold_6 . CDS 976179 976604 . + 0 ID=Physo111665;Parent=Physo111665;rank=5 scaffold_6 . exon 976179 976604 . + . ID=Physo111665.7;Parent=Physo111665;constitutive=1;rank=7 scaffold_6 ensembl protein_coding_gene 979231 980987 . + . ID=Physo129125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60282;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 979231 980987 . + . ID=Physo129125;Parent=Physo129125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 979231 979884 . + . ID=Physo129125.1;Parent=Physo129125;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 979390 979884 . + 0 ID=Physo129125;Parent=Physo129125;rank=1 scaffold_6 . CDS 979944 980472 . + 0 ID=Physo129125;Parent=Physo129125;rank=2 scaffold_6 . exon 979944 980472 . + . ID=Physo129125.2;Parent=Physo129125;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_6 . CDS 980527 980987 . + 0 ID=Physo129125;Parent=Physo129125;rank=3 scaffold_6 . exon 980527 980987 . + . ID=Physo129125.3;Parent=Physo129125;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . repeat_region 985974 986001 . ? . description=trf scaffold_6 . repeat_region 990676 990695 . ? . description=trf scaffold_6 . repeat_region 990818 993192 . - . description=GypsyPi-1c_I-int scaffold_6 ensembl protein_coding_gene 983440 986489 . - . ID=Physo129126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60283;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 983440 986489 . - . ID=Physo129126;Parent=Physo129126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 983440 984651 . - 0 ID=Physo129126;Parent=Physo129126;rank=3 scaffold_6 . exon 983440 984651 . - . ID=Physo129126.3;Parent=Physo129126;constitutive=1;rank=3 scaffold_6 . CDS 984712 985798 . - 0 ID=Physo129126;Parent=Physo129126;rank=2 scaffold_6 . exon 984712 985798 . - . ID=Physo129126.2;Parent=Physo129126;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 985978 986489 . - 0 ID=Physo129126;Parent=Physo129126;rank=1 scaffold_6 . exon 985978 986489 . - . ID=Physo129126.1;Parent=Physo129126;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 988715 989116 . + . ID=Physo129127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60284;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 988715 989116 . + . ID=Physo129127;Parent=Physo129127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 988715 989116 . + 0 ID=Physo129127;Parent=Physo129127;rank=1 scaffold_6 . exon 988715 989116 . + . ID=Physo129127.1;Parent=Physo129127;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 990503 993912 . - . ID=Physo129128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60285;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 990503 993912 . - . ID=Physo129128;Parent=Physo129128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 990503 990509 . - 0 ID=Physo129128;Parent=Physo129128;rank=6 scaffold_6 . exon 990503 990509 . - . ID=Physo129128.6;Parent=Physo129128;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 990550 991450 . - 0 ID=Physo129128;Parent=Physo129128;rank=5 scaffold_6 . exon 990550 991450 . - . ID=Physo129128.5;Parent=Physo129128;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . CDS 991493 991865 . - 0 ID=Physo129128;Parent=Physo129128;rank=4 scaffold_6 . exon 991493 991865 . - . ID=Physo129128.4;Parent=Physo129128;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 991925 992095 . - 0 ID=Physo129128;Parent=Physo129128;rank=3 scaffold_6 . exon 991925 992095 . - . ID=Physo129128.3;Parent=Physo129128;constitutive=1;rank=3 scaffold_6 . CDS 992286 993368 . - 0 ID=Physo129128;Parent=Physo129128;rank=2 scaffold_6 . exon 992286 993368 . - . ID=Physo129128.2;Parent=Physo129128;constitutive=1;rank=2 scaffold_6 . CDS 993595 993912 . - 0 ID=Physo129128;Parent=Physo129128;rank=1 scaffold_6 . biological_region 993538 993540 0.999 - . logic_name=eponine scaffold_6 . biological_region 993755 993755 0.999 + . logic_name=eponine scaffold_6 . biological_region 994226 994228 0.999 - . logic_name=eponine scaffold_6 . repeat_region 996926 996933 . ? . description=dust scaffold_6 . biological_region 999195 999198 0.999 + . logic_name=eponine scaffold_6 . biological_region 1001016 1001018 0.999 + . logic_name=eponine scaffold_6 . repeat_region 1003020 1003028 . ? . description=dust scaffold_6 . exon 993595 993912 . - . ID=Physo129128.1;Parent=Physo129128;constitutive=1;rank=1 scaffold_6 . repeat_region 1003214 1003262 . ? . description=trf scaffold_6 . repeat_region 1007630 1007682 . ? . description=trf scaffold_6 . repeat_region 1009920 1009944 . ? . description=trf scaffold_6 ensembl protein_coding_gene 1006724 1006984 . + . ID=Physo111668;biotype=protein_coding;external_name=estExt_Genewise1.C_60260;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1006724 1006984 . + . ID=Physo111668;Parent=Physo111668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 1006724 1006984 . + . ID=Physo111668.1;Parent=Physo111668;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 1006763 1006984 . + 0 ID=Physo111668;Parent=Physo111668;rank=1 scaffold_6 ensembl protein_coding_gene 1003320 1005223 . + . ID=Physo129129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60286;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1003320 1005223 . + . ID=Physo129129;Parent=Physo129129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1003320 1003505 . + 0 ID=Physo129129;Parent=Physo129129;rank=1 scaffold_6 . exon 1003320 1003505 . + . ID=Physo129129.1;Parent=Physo129129;constitutive=1;rank=1 scaffold_6 . CDS 1003539 1003676 . + 0 ID=Physo129129;Parent=Physo129129;rank=2 scaffold_6 . exon 1003539 1003676 . + . ID=Physo129129.2;Parent=Physo129129;constitutive=1;rank=2 scaffold_6 . CDS 1003701 1004159 . + 0 ID=Physo129129;Parent=Physo129129;rank=3 scaffold_6 . exon 1003701 1004159 . + . ID=Physo129129.3;Parent=Physo129129;constitutive=1;rank=3 scaffold_6 . CDS 1004200 1004406 . + 0 ID=Physo129129;Parent=Physo129129;rank=4 scaffold_6 . exon 1004200 1004406 . + . ID=Physo129129.4;Parent=Physo129129;constitutive=1;rank=4 scaffold_6 . CDS 1004493 1005147 . + 0 ID=Physo129129;Parent=Physo129129;rank=5 scaffold_6 . exon 1004493 1005147 . + . ID=Physo129129.5;Parent=Physo129129;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_6 . CDS 1005213 1005223 . + 0 ID=Physo129129;Parent=Physo129129;rank=6 scaffold_6 . exon 1005213 1005223 . + . ID=Physo129129.6;Parent=Physo129129;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . repeat_region 1014620 1014640 . ? . description=dust scaffold_6 . repeat_region 1015850 1015903 . ? . description=dust scaffold_6 . repeat_region 1016975 1016987 . ? . description=dust scaffold_6 ensembl protein_coding_gene 1019739 1020272 . - . ID=Physo108350;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60040;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1019739 1020272 . - . ID=Physo108350;Parent=Physo108350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1019739 1020272 . - 0 ID=Physo108350;Parent=Physo108350;rank=1 scaffold_6 . exon 1019739 1020272 . - . ID=Physo108350.1;Parent=Physo108350;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1015333 1016915 . + . ID=Physo129130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60287;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1015333 1016915 . + . ID=Physo129130;Parent=Physo129130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1015333 1015556 . + 0 ID=Physo129130;Parent=Physo129130;rank=1 scaffold_6 . exon 1015333 1015556 . + . ID=Physo129130.1;Parent=Physo129130;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 1015908 1015917 . + 0 ID=Physo129130;Parent=Physo129130;rank=2 scaffold_6 . exon 1015908 1015917 . + . ID=Physo129130.2;Parent=Physo129130;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 1015941 1016043 . + 0 ID=Physo129130;Parent=Physo129130;rank=3 scaffold_6 . exon 1015941 1016043 . + . ID=Physo129130.3;Parent=Physo129130;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 1016169 1016377 . + 0 ID=Physo129130;Parent=Physo129130;rank=4 scaffold_6 . exon 1016169 1016377 . + . ID=Physo129130.4;Parent=Physo129130;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 1016448 1016617 . + 0 ID=Physo129130;Parent=Physo129130;rank=5 scaffold_6 . exon 1016448 1016617 . + . ID=Physo129130.5;Parent=Physo129130;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_6 . CDS 1016684 1016915 . + 0 ID=Physo129130;Parent=Physo129130;rank=6 scaffold_6 . exon 1016684 1016915 . + . ID=Physo129130.6;Parent=Physo129130;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . biological_region 1025377 1025380 0.999 - . logic_name=eponine scaffold_6 . biological_region 1025776 1025776 0.999 + . logic_name=eponine scaffold_6 . repeat_region 1026729 1026776 . ? . description=trf scaffold_6 . repeat_region 1026729 1026776 . + . description=(TTCA)n scaffold_6 . biological_region 1031756 1031758 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 1031836 1032657 . + . ID=Physo108351;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60041;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1031836 1032657 . + . ID=Physo108351;Parent=Physo108351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1031836 1032128 . + 0 ID=Physo108351;Parent=Physo108351;rank=1 scaffold_6 . exon 1031836 1032128 . + . ID=Physo108351.1;Parent=Physo108351;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 1032165 1032657 . + 0 ID=Physo108351;Parent=Physo108351;rank=2 scaffold_6 . exon 1032165 1032657 . + . ID=Physo108351.2;Parent=Physo108351;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 ensembl protein_coding_gene 1023188 1024964 . - . ID=Physo129132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60289;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1023188 1024964 . - . ID=Physo129132;Parent=Physo129132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1023188 1023542 . - 0 ID=Physo129132;Parent=Physo129132;rank=4 scaffold_6 . exon 1023188 1023542 . - . ID=Physo129132.4;Parent=Physo129132;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 1023679 1024145 . - 0 ID=Physo129132;Parent=Physo129132;rank=3 scaffold_6 . exon 1023679 1024145 . - . ID=Physo129132.3;Parent=Physo129132;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 1024331 1024335 . - 0 ID=Physo129132;Parent=Physo129132;rank=2 scaffold_6 . exon 1024331 1024335 . - . ID=Physo129132.2;Parent=Physo129132;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1024778 1024964 . - 0 ID=Physo129132;Parent=Physo129132;rank=1 scaffold_6 . exon 1024778 1024964 . - . ID=Physo129132.1;Parent=Physo129132;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 1039074 1041248 . - . ID=Physo129135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60292;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1039074 1041248 . - . ID=Physo129135;Parent=Physo129135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1039074 1040329 . - 0 ID=Physo129135;Parent=Physo129135;rank=3 scaffold_6 . exon 1039074 1040329 . - . ID=Physo129135.3;Parent=Physo129135;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 1040633 1040959 . - 0 ID=Physo129135;Parent=Physo129135;rank=2 scaffold_6 . exon 1040633 1040959 . - . ID=Physo129135.2;Parent=Physo129135;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1041089 1041248 . - 0 ID=Physo129135;Parent=Physo129135;rank=1 scaffold_6 . exon 1041089 1041248 . - . ID=Physo129135.1;Parent=Physo129135;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 1037113 1038924 . + . ID=Physo155647;biotype=protein_coding;external_name=C_scaffold_6000078;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1037113 1038924 . + . ID=Physo155647;Parent=Physo155647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1037113 1037440 . + 0 ID=Physo155647;Parent=Physo155647;rank=1 scaffold_6 . exon 1037113 1037440 . + . ID=Physo155647.1;Parent=Physo155647;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 1037507 1038658 . + 0 ID=Physo155647;Parent=Physo155647;rank=2 scaffold_6 . exon 1037507 1038658 . + . ID=Physo155647.2;Parent=Physo155647;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1038692 1038778 . + 0 ID=Physo155647;Parent=Physo155647;rank=3 scaffold_6 . exon 1038692 1038778 . + . ID=Physo155647.3;Parent=Physo155647;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 1038806 1038924 . + 0 ID=Physo155647;Parent=Physo155647;rank=4 scaffold_6 . exon 1038806 1038924 . + . ID=Physo155647.4;Parent=Physo155647;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 ensembl protein_coding_gene 1041464 1042556 . - . ID=Physo155649;biotype=protein_coding;external_name=C_scaffold_6000080;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1041464 1042556 . - . ID=Physo155649;Parent=Physo155649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1041464 1041592 . - 0 ID=Physo155649;Parent=Physo155649;rank=4 scaffold_6 . exon 1041464 1041592 . - . ID=Physo155649.4;Parent=Physo155649;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 1041677 1041824 . - 0 ID=Physo155649;Parent=Physo155649;rank=3 scaffold_6 . exon 1041677 1041824 . - . ID=Physo155649.3;Parent=Physo155649;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 1041954 1042165 . - 0 ID=Physo155649;Parent=Physo155649;rank=2 scaffold_6 . exon 1041954 1042165 . - . ID=Physo155649.2;Parent=Physo155649;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1042298 1042556 . - 0 ID=Physo155649;Parent=Physo155649;rank=1 scaffold_6 . exon 1042298 1042556 . - . ID=Physo155649.1;Parent=Physo155649;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . biological_region 1045086 1045092 0.999 - . logic_name=eponine scaffold_6 . biological_region 1046405 1046408 0.999 - . logic_name=eponine scaffold_6 . biological_region 1046462 1046466 0.999 + . logic_name=eponine scaffold_6 . biological_region 1049451 1049451 0.999 - . logic_name=eponine scaffold_6 . biological_region 1051546 1051548 0.999 + . logic_name=eponine scaffold_6 . biological_region 1051553 1051553 0.999 + . logic_name=eponine scaffold_6 . biological_region 1051627 1051635 0.999 - . logic_name=eponine scaffold_6 . biological_region 1051661 1051662 0.999 + . logic_name=eponine scaffold_6 . biological_region 1051684 1051684 0.999 + . logic_name=eponine scaffold_6 . biological_region 1051733 1051736 0.999 - . logic_name=eponine scaffold_6 . biological_region 1052360 1052371 0.999 + . logic_name=eponine scaffold_6 . repeat_region 1052410 1052473 . ? . description=dust scaffold_6 . biological_region 1052425 1052431 0.999 + . logic_name=eponine scaffold_6 . biological_region 1052517 1052522 0.999 + . logic_name=eponine scaffold_6 . biological_region 1052537 1052539 0.999 + . logic_name=eponine scaffold_6 . biological_region 1052564 1052564 0.999 + . logic_name=eponine scaffold_6 . repeat_region 1052617 1052695 . ? . description=trf scaffold_6 . biological_region 1052619 1052625 0.999 + . logic_name=eponine scaffold_6 . repeat_region 1052624 1052691 . ? . description=trf scaffold_6 . biological_region 1052643 1052651 0.999 + . logic_name=eponine scaffold_6 . biological_region 1052664 1052670 0.999 - . logic_name=eponine scaffold_6 . biological_region 1052672 1052679 0.999 + . logic_name=eponine scaffold_6 . biological_region 1052675 1052677 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 1043445 1047020 . - . ID=Physo129136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60293;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1043445 1047020 . - . ID=Physo129136;Parent=Physo129136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1043445 1047020 . - 0 ID=Physo129136;Parent=Physo129136;rank=1 scaffold_6 . exon 1043445 1047020 . - . ID=Physo129136.1;Parent=Physo129136;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1052393 1053644 . + . ID=Physo129138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60295;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1052393 1053644 . + . ID=Physo129138;Parent=Physo129138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1052393 1052923 . + 0 ID=Physo129138;Parent=Physo129138;rank=1 scaffold_6 . exon 1052393 1052923 . + . ID=Physo129138.1;Parent=Physo129138;constitutive=1;rank=1 scaffold_6 . CDS 1053010 1053572 . + 0 ID=Physo129138;Parent=Physo129138;rank=2 scaffold_6 . CDS 1053593 1053644 . + 0 ID=Physo129138;Parent=Physo129138;rank=3 scaffold_6 ensembl protein_coding_gene 1047385 1049265 . + . ID=Physo155651;biotype=protein_coding;external_name=C_scaffold_6000082;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1047385 1049265 . + . ID=Physo155651;Parent=Physo155651;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1047385 1047496 . + 0 ID=Physo155651;Parent=Physo155651;rank=1 scaffold_6 . exon 1047385 1047496 . + . ID=Physo155651.1;Parent=Physo155651;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 1047564 1047621 . + 0 ID=Physo155651;Parent=Physo155651;rank=2 scaffold_6 . exon 1047564 1047621 . + . ID=Physo155651.2;Parent=Physo155651;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 1047684 1047808 . + 0 ID=Physo155651;Parent=Physo155651;rank=3 scaffold_6 . exon 1047684 1047808 . + . ID=Physo155651.3;Parent=Physo155651;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 1047873 1047947 . + 0 ID=Physo155651;Parent=Physo155651;rank=4 scaffold_6 . exon 1047873 1047947 . + . ID=Physo155651.4;Parent=Physo155651;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 1048559 1048756 . + 0 ID=Physo155651;Parent=Physo155651;rank=5 scaffold_6 . exon 1048559 1048756 . + . ID=Physo155651.5;Parent=Physo155651;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 1048834 1048925 . + 0 ID=Physo155651;Parent=Physo155651;rank=6 scaffold_6 . exon 1048834 1048925 . + . ID=Physo155651.6;Parent=Physo155651;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 1049050 1049265 . + 0 ID=Physo155651;Parent=Physo155651;rank=7 scaffold_6 . exon 1049050 1049265 . + . ID=Physo155651.7;Parent=Physo155651;constitutive=1;rank=7 scaffold_6 ensembl protein_coding_gene 1049353 1051749 . - . ID=Physo155652;biotype=protein_coding;external_name=C_scaffold_6000083;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1049353 1051749 . - . ID=Physo155652;Parent=Physo155652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1049353 1049478 . - 0 ID=Physo155652;Parent=Physo155652;rank=10 scaffold_6 . exon 1049353 1049478 . - . ID=Physo155652.10;Parent=Physo155652;constitutive=1;rank=10 scaffold_6 . CDS 1049576 1049673 . - 0 ID=Physo155652;Parent=Physo155652;rank=9 scaffold_6 . exon 1049576 1049673 . - . ID=Physo155652.9;Parent=Physo155652;constitutive=1;ensembl_phase=1;rank=9 scaffold_6 . CDS 1049741 1049741 . - 0 ID=Physo155652;Parent=Physo155652;rank=8 scaffold_6 . exon 1049741 1049741 . - . ID=Physo155652.8;Parent=Physo155652;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_6 . CDS 1050023 1050189 . - 0 ID=Physo155652;Parent=Physo155652;rank=7 scaffold_6 . exon 1050023 1050189 . - . ID=Physo155652.7;Parent=Physo155652;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 1050263 1050403 . - 0 ID=Physo155652;Parent=Physo155652;rank=6 scaffold_6 . exon 1050263 1050403 . - . ID=Physo155652.6;Parent=Physo155652;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 1050563 1050735 . - 0 ID=Physo155652;Parent=Physo155652;rank=5 scaffold_6 . exon 1050563 1050735 . - . ID=Physo155652.5;Parent=Physo155652;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 1050809 1051000 . - 0 ID=Physo155652;Parent=Physo155652;rank=4 scaffold_6 . exon 1050809 1051000 . - . ID=Physo155652.4;Parent=Physo155652;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_6 . CDS 1051076 1051159 . - 0 ID=Physo155652;Parent=Physo155652;rank=3 scaffold_6 . exon 1051076 1051159 . - . ID=Physo155652.3;Parent=Physo155652;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 1051229 1051355 . - 0 ID=Physo155652;Parent=Physo155652;rank=2 scaffold_6 . exon 1051229 1051355 . - . ID=Physo155652.2;Parent=Physo155652;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 1051440 1051749 . - 0 ID=Physo155652;Parent=Physo155652;rank=1 scaffold_6 . exon 1051440 1051749 . - . ID=Physo155652.1;Parent=Physo155652;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . exon 1053010 1053572 . + . ID=Physo129138.2;Parent=Physo129138;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . exon 1053593 1053644 . + . ID=Physo129138.3;Parent=Physo129138;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 ensembl protein_coding_gene 1055273 1059529 . + . ID=Physo129139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60296;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1055273 1059529 . + . ID=Physo129139;Parent=Physo129139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1055273 1057189 . + 0 ID=Physo129139;Parent=Physo129139;rank=1 scaffold_6 . exon 1055273 1057189 . + . ID=Physo129139.1;Parent=Physo129139;constitutive=1;rank=1 scaffold_6 . CDS 1057386 1057409 . + 0 ID=Physo129139;Parent=Physo129139;rank=2 scaffold_6 . exon 1057386 1057409 . + . ID=Physo129139.2;Parent=Physo129139;constitutive=1;rank=2 scaffold_6 . CDS 1057501 1059074 . + 0 ID=Physo129139;Parent=Physo129139;rank=3 scaffold_6 . exon 1057501 1059074 . + . ID=Physo129139.3;Parent=Physo129139;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_6 . CDS 1059114 1059171 . + 0 ID=Physo129139;Parent=Physo129139;rank=4 scaffold_6 . exon 1059114 1059171 . + . ID=Physo129139.4;Parent=Physo129139;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 1059248 1059529 . + 0 ID=Physo129139;Parent=Physo129139;rank=5 scaffold_6 . exon 1059248 1059529 . + . ID=Physo129139.5;Parent=Physo129139;constitutive=1;rank=5 scaffold_6 ensembl protein_coding_gene 1059783 1061427 . - . ID=Physo155655;biotype=protein_coding;external_name=C_scaffold_6000086;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1059783 1061427 . - . ID=Physo155655;Parent=Physo155655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1059783 1059997 . - 0 ID=Physo155655;Parent=Physo155655;rank=8 scaffold_6 . exon 1059783 1059997 . - . ID=Physo155655.8;Parent=Physo155655;constitutive=1;ensembl_phase=1;rank=8 scaffold_6 . CDS 1060068 1060153 . - 0 ID=Physo155655;Parent=Physo155655;rank=7 scaffold_6 . exon 1060068 1060153 . - . ID=Physo155655.7;Parent=Physo155655;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_6 . CDS 1060227 1060309 . - 0 ID=Physo155655;Parent=Physo155655;rank=6 scaffold_6 . exon 1060227 1060309 . - . ID=Physo155655.6;Parent=Physo155655;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_6 . CDS 1060374 1060494 . - 0 ID=Physo155655;Parent=Physo155655;rank=5 scaffold_6 . exon 1060374 1060494 . - . ID=Physo155655.5;Parent=Physo155655;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 1060562 1060605 . - 0 ID=Physo155655;Parent=Physo155655;rank=4 scaffold_6 . exon 1060562 1060605 . - . ID=Physo155655.4;Parent=Physo155655;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 1060671 1060889 . - 0 ID=Physo155655;Parent=Physo155655;rank=3 scaffold_6 . exon 1060671 1060889 . - . ID=Physo155655.3;Parent=Physo155655;constitutive=1;rank=3 scaffold_6 . CDS 1060965 1061004 . - 0 ID=Physo155655;Parent=Physo155655;rank=2 scaffold_6 . exon 1060965 1061004 . - . ID=Physo155655.2;Parent=Physo155655;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 1061195 1061427 . - 0 ID=Physo155655;Parent=Physo155655;rank=1 scaffold_6 . exon 1061195 1061427 . - . ID=Physo155655.1;Parent=Physo155655;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . repeat_region 1063243 1063434 . - . description=Polinton-1_PI scaffold_6 . biological_region 1065608 1065615 0.999 + . logic_name=eponine scaffold_6 . biological_region 1065667 1065669 0.999 + . logic_name=eponine scaffold_6 . biological_region 1065766 1065771 0.999 - . logic_name=eponine scaffold_6 . biological_region 1066680 1066680 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1068652 1068684 . ? . description=trf scaffold_6 . biological_region 1069319 1069325 0.999 - . logic_name=eponine scaffold_6 . biological_region 1069349 1069353 0.999 + . logic_name=eponine scaffold_6 . biological_region 1069410 1069411 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1069692 1069718 . ? . description=trf scaffold_6 . repeat_region 1072484 1072522 . ? . description=dust scaffold_6 . repeat_region 1072496 1072522 . ? . description=trf scaffold_6 ensembl protein_coding_gene 1069963 1071095 . - . ID=Physo108352;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60042;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1069963 1071095 . - . ID=Physo108352;Parent=Physo108352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 1069963 1071095 . - . ID=Physo108352.1;Parent=Physo108352;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 1070055 1071089 . - 0 ID=Physo108352;Parent=Physo108352;rank=1 scaffold_6 ensembl protein_coding_gene 1063754 1065348 . - . ID=Physo155656;biotype=protein_coding;external_name=C_scaffold_6000087;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1063754 1065348 . - . ID=Physo155656;Parent=Physo155656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1063754 1063926 . - 0 ID=Physo155656;Parent=Physo155656;rank=10 scaffold_6 . exon 1063754 1063926 . - . ID=Physo155656.10;Parent=Physo155656;constitutive=1;ensembl_phase=1;rank=10 scaffold_6 . CDS 1063999 1064081 . - 0 ID=Physo155656;Parent=Physo155656;rank=9 scaffold_6 . exon 1063999 1064081 . - . ID=Physo155656.9;Parent=Physo155656;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_6 . CDS 1064154 1064236 . - 0 ID=Physo155656;Parent=Physo155656;rank=8 scaffold_6 . exon 1064154 1064236 . - . ID=Physo155656.8;Parent=Physo155656;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_6 . CDS 1064311 1064374 . - 0 ID=Physo155656;Parent=Physo155656;rank=7 scaffold_6 . exon 1064311 1064374 . - . ID=Physo155656.7;Parent=Physo155656;constitutive=1;ensembl_phase=2;rank=7 scaffold_6 . CDS 1064445 1064494 . - 0 ID=Physo155656;Parent=Physo155656;rank=6 scaffold_6 . exon 1064445 1064494 . - . ID=Physo155656.6;Parent=Physo155656;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_6 . CDS 1064571 1064789 . - 0 ID=Physo155656;Parent=Physo155656;rank=5 scaffold_6 . exon 1064571 1064789 . - . ID=Physo155656.5;Parent=Physo155656;constitutive=1;rank=5 scaffold_6 . CDS 1064867 1064906 . - 0 ID=Physo155656;Parent=Physo155656;rank=4 scaffold_6 . exon 1064867 1064906 . - . ID=Physo155656.4;Parent=Physo155656;constitutive=1;ensembl_phase=2;rank=4 scaffold_6 . CDS 1064994 1065050 . - 0 ID=Physo155656;Parent=Physo155656;rank=3 scaffold_6 . exon 1064994 1065050 . - . ID=Physo155656.3;Parent=Physo155656;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_6 . CDS 1065134 1065233 . - 0 ID=Physo155656;Parent=Physo155656;rank=2 scaffold_6 . exon 1065134 1065233 . - . ID=Physo155656.2;Parent=Physo155656;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 1065270 1065348 . - 0 ID=Physo155656;Parent=Physo155656;rank=1 scaffold_6 . exon 1065270 1065348 . - . ID=Physo155656.1;Parent=Physo155656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 1065925 1068420 . + . ID=Physo155657;biotype=protein_coding;external_name=C_scaffold_6000088;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1065925 1068420 . + . ID=Physo155657;Parent=Physo155657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1065925 1066014 . + 0 ID=Physo155657;Parent=Physo155657;rank=1 scaffold_6 . exon 1065925 1066014 . + . ID=Physo155657.1;Parent=Physo155657;constitutive=1;rank=1 scaffold_6 . CDS 1066097 1066269 . + 0 ID=Physo155657;Parent=Physo155657;rank=2 scaffold_6 . exon 1066097 1066269 . + . ID=Physo155657.2;Parent=Physo155657;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 1066559 1067075 . + 0 ID=Physo155657;Parent=Physo155657;rank=3 scaffold_6 . exon 1066559 1067075 . + . ID=Physo155657.3;Parent=Physo155657;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 1067151 1067202 . + 0 ID=Physo155657;Parent=Physo155657;rank=4 scaffold_6 . exon 1067151 1067202 . + . ID=Physo155657.4;Parent=Physo155657;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . CDS 1067301 1067378 . + 0 ID=Physo155657;Parent=Physo155657;rank=5 scaffold_6 . exon 1067301 1067378 . + . ID=Physo155657.5;Parent=Physo155657;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 1067482 1067520 . + 0 ID=Physo155657;Parent=Physo155657;rank=6 scaffold_6 . exon 1067482 1067520 . + . ID=Physo155657.6;Parent=Physo155657;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 1067715 1067777 . + 0 ID=Physo155657;Parent=Physo155657;rank=7 scaffold_6 . exon 1067715 1067777 . + . ID=Physo155657.7;Parent=Physo155657;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_6 . CDS 1068071 1068420 . + 0 ID=Physo155657;Parent=Physo155657;rank=8 scaffold_6 . exon 1068071 1068420 . + . ID=Physo155657.8;Parent=Physo155657;constitutive=1;ensembl_phase=1;rank=8 scaffold_6 ensembl protein_coding_gene 1068911 1069647 . + . ID=Physo155659;biotype=protein_coding;external_name=C_scaffold_6000090;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1068911 1069647 . + . ID=Physo155659;Parent=Physo155659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1068911 1069019 . + 0 ID=Physo155659;Parent=Physo155659;rank=1 scaffold_6 . exon 1068911 1069019 . + . ID=Physo155659.1;Parent=Physo155659;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 1069093 1069647 . + 0 ID=Physo155659;Parent=Physo155659;rank=2 scaffold_6 . exon 1069093 1069647 . + . ID=Physo155659.2;Parent=Physo155659;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 1071710 1072660 . - . ID=Physo155663;biotype=protein_coding;external_name=C_scaffold_6000094;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1071710 1072660 . - . ID=Physo155663;Parent=Physo155663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1071710 1071892 . - 0 ID=Physo155663;Parent=Physo155663;rank=4 scaffold_6 . exon 1071710 1071892 . - . ID=Physo155663.4;Parent=Physo155663;constitutive=1;rank=4 scaffold_6 . CDS 1071968 1072045 . - 0 ID=Physo155663;Parent=Physo155663;rank=3 scaffold_6 . exon 1071968 1072045 . - . ID=Physo155663.3;Parent=Physo155663;constitutive=1;rank=3 scaffold_6 . CDS 1072136 1072319 . - 0 ID=Physo155663;Parent=Physo155663;rank=2 scaffold_6 . exon 1072136 1072319 . - . ID=Physo155663.2;Parent=Physo155663;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 1072650 1072660 . - 0 ID=Physo155663;Parent=Physo155663;rank=1 scaffold_6 . exon 1072650 1072660 . - . ID=Physo155663.1;Parent=Physo155663;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 1073592 1075228 . + . ID=Physo155664;biotype=protein_coding;external_name=C_scaffold_6000095;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1073592 1075228 . + . ID=Physo155664;Parent=Physo155664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1073592 1073928 . + 0 ID=Physo155664;Parent=Physo155664;rank=1 scaffold_6 . exon 1073592 1073928 . + . ID=Physo155664.1;Parent=Physo155664;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 1074003 1074199 . + 0 ID=Physo155664;Parent=Physo155664;rank=2 scaffold_6 . exon 1074003 1074199 . + . ID=Physo155664.2;Parent=Physo155664;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1074281 1074563 . + 0 ID=Physo155664;Parent=Physo155664;rank=3 scaffold_6 . exon 1074281 1074563 . + . ID=Physo155664.3;Parent=Physo155664;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 1074634 1074738 . + 0 ID=Physo155664;Parent=Physo155664;rank=4 scaffold_6 . exon 1074634 1074738 . + . ID=Physo155664.4;Parent=Physo155664;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 1074843 1075228 . + 0 ID=Physo155664;Parent=Physo155664;rank=5 scaffold_6 . exon 1074843 1075228 . + . ID=Physo155664.5;Parent=Physo155664;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 ensembl protein_coding_gene 1075661 1076772 . + . ID=Physo155665;biotype=protein_coding;external_name=C_scaffold_6000096;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1075661 1076772 . + . ID=Physo155665;Parent=Physo155665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1075661 1076029 . + 0 ID=Physo155665;Parent=Physo155665;rank=1 scaffold_6 . exon 1075661 1076029 . + . ID=Physo155665.1;Parent=Physo155665;constitutive=1;rank=1 scaffold_6 . CDS 1076098 1076223 . + 0 ID=Physo155665;Parent=Physo155665;rank=2 scaffold_6 . exon 1076098 1076223 . + . ID=Physo155665.2;Parent=Physo155665;constitutive=1;rank=2 scaffold_6 . CDS 1076312 1076492 . + 0 ID=Physo155665;Parent=Physo155665;rank=3 scaffold_6 . exon 1076312 1076492 . + . ID=Physo155665.3;Parent=Physo155665;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 1076558 1076772 . + 0 ID=Physo155665;Parent=Physo155665;rank=4 scaffold_6 . exon 1076558 1076772 . + . ID=Physo155665.4;Parent=Physo155665;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 . repeat_region 1083458 1083478 . ? . description=trf scaffold_6 . biological_region 1083509 1083513 0.999 - . logic_name=eponine scaffold_6 . biological_region 1084988 1084991 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1089921 1089937 . ? . description=dust scaffold_6 . biological_region 1091781 1091782 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 1083750 1084998 . - . ID=Physo129147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60304;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1083750 1084998 . - . ID=Physo129147;Parent=Physo129147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1083750 1084785 . - 0 ID=Physo129147;Parent=Physo129147;rank=2 scaffold_6 . exon 1083750 1084785 . - . ID=Physo129147.2;Parent=Physo129147;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 1084817 1084998 . - 0 ID=Physo129147;Parent=Physo129147;rank=1 scaffold_6 . exon 1084817 1084998 . - . ID=Physo129147.1;Parent=Physo129147;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 ensembl protein_coding_gene 1090639 1091946 . + . ID=Physo129148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60305;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1090639 1091946 . + . ID=Physo129148;Parent=Physo129148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1090639 1090714 . + 0 ID=Physo129148;Parent=Physo129148;rank=1 scaffold_6 . exon 1090639 1090714 . + . ID=Physo129148.1;Parent=Physo129148;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 1090791 1091469 . + 0 ID=Physo129148;Parent=Physo129148;rank=2 scaffold_6 . exon 1090791 1091469 . + . ID=Physo129148.2;Parent=Physo129148;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 1091520 1091946 . + 0 ID=Physo129148;Parent=Physo129148;rank=3 scaffold_6 . exon 1091520 1091946 . + . ID=Physo129148.3;Parent=Physo129148;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . repeat_region 1100985 1102537 . + . description=GypsyPi-1c_I-int scaffold_6 ensembl protein_coding_gene 1095535 1095807 . - . ID=Physo111682;biotype=protein_coding;external_name=estExt_Genewise1.C_60274;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1095535 1095807 . - . ID=Physo111682;Parent=Physo111682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1095535 1095759 . - 0 ID=Physo111682;Parent=Physo111682;rank=1 scaffold_6 . exon 1095535 1095807 . - . ID=Physo111682.1;Parent=Physo111682;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 1096268 1096330 . - . ID=Physo111685;biotype=protein_coding;external_name=estExt_Genewise1.C_60277;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1096268 1096330 . - . ID=Physo111685;Parent=Physo111685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1096268 1096330 . - 0 ID=Physo111685;Parent=Physo111685;rank=1 scaffold_6 . exon 1096268 1096330 . - . ID=Physo111685.1;Parent=Physo111685;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1096453 1096629 . - . ID=Physo111687;biotype=protein_coding;external_name=estExt_Genewise1.C_60279;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1096453 1096629 . - . ID=Physo111687;Parent=Physo111687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1096453 1096626 . - 0 ID=Physo111687;Parent=Physo111687;rank=1 scaffold_6 . exon 1096453 1096629 . - . ID=Physo111687.1;Parent=Physo111687;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 ensembl protein_coding_gene 1101321 1103358 . + . ID=Physo129150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60307;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1101321 1103358 . + . ID=Physo129150;Parent=Physo129150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1101321 1101959 . + 0 ID=Physo129150;Parent=Physo129150;rank=1 scaffold_6 . exon 1101321 1101959 . + . ID=Physo129150.1;Parent=Physo129150;constitutive=1;rank=1 scaffold_6 . CDS 1102018 1102434 . + 0 ID=Physo129150;Parent=Physo129150;rank=2 scaffold_6 . exon 1102018 1102434 . + . ID=Physo129150.2;Parent=Physo129150;constitutive=1;rank=2 scaffold_6 . CDS 1102561 1102813 . + 0 ID=Physo129150;Parent=Physo129150;rank=3 scaffold_6 . CDS 1102889 1103358 . + 0 ID=Physo129150;Parent=Physo129150;rank=4 scaffold_6 . biological_region 1103503 1103505 0.999 + . logic_name=eponine scaffold_6 . biological_region 1103511 1103513 0.999 - . logic_name=eponine scaffold_6 . biological_region 1103564 1103571 0.999 + . logic_name=eponine scaffold_6 . biological_region 1103618 1103624 0.999 - . logic_name=eponine scaffold_6 . biological_region 1104168 1104173 0.999 + . logic_name=eponine scaffold_6 . biological_region 1104234 1104235 0.999 - . logic_name=eponine scaffold_6 . biological_region 1104269 1104270 0.999 - . logic_name=eponine scaffold_6 . biological_region 1104286 1104290 0.999 - . logic_name=eponine scaffold_6 . biological_region 1106258 1106260 0.999 - . logic_name=eponine scaffold_6 . biological_region 1106286 1106287 0.999 - . logic_name=eponine scaffold_6 . biological_region 1106461 1106466 0.999 + . logic_name=eponine scaffold_6 . biological_region 1106528 1106531 0.999 - . logic_name=eponine scaffold_6 . biological_region 1106579 1106582 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1109308 1109360 . ? . description=dust scaffold_6 . repeat_region 1109323 1109372 . ? . description=trf scaffold_6 . biological_region 1110737 1110740 0.999 - . logic_name=eponine scaffold_6 . biological_region 1111637 1111637 0.999 - . logic_name=eponine scaffold_6 . exon 1102561 1102813 . + . ID=Physo129150.3;Parent=Physo129150;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . exon 1102889 1103358 . + . ID=Physo129150.4;Parent=Physo129150;constitutive=1;ensembl_phase=1;rank=4 scaffold_6 ensembl protein_coding_gene 1103445 1106627 . - . ID=Physo129151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60308;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1103445 1106627 . - . ID=Physo129151;Parent=Physo129151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1103445 1103459 . - 0 ID=Physo129151;Parent=Physo129151;rank=7 scaffold_6 . exon 1103445 1103459 . - . ID=Physo129151.7;Parent=Physo129151;constitutive=1;rank=7 scaffold_6 . CDS 1103509 1103802 . - 0 ID=Physo129151;Parent=Physo129151;rank=6 scaffold_6 . exon 1103509 1103802 . - . ID=Physo129151.6;Parent=Physo129151;constitutive=1;rank=6 scaffold_6 . CDS 1103893 1104550 . - 0 ID=Physo129151;Parent=Physo129151;rank=5 scaffold_6 . exon 1103893 1104550 . - . ID=Physo129151.5;Parent=Physo129151;constitutive=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 1105074 1105090 . - 0 ID=Physo129151;Parent=Physo129151;rank=4 scaffold_6 . exon 1105074 1105090 . - . ID=Physo129151.4;Parent=Physo129151;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 1105183 1105701 . - 0 ID=Physo129151;Parent=Physo129151;rank=3 scaffold_6 . exon 1105183 1105701 . - . ID=Physo129151.3;Parent=Physo129151;constitutive=1;rank=3 scaffold_6 . CDS 1105759 1106169 . - 0 ID=Physo129151;Parent=Physo129151;rank=2 scaffold_6 . exon 1105759 1106169 . - . ID=Physo129151.2;Parent=Physo129151;constitutive=1;rank=2 scaffold_6 . CDS 1106310 1106627 . - 0 ID=Physo129151;Parent=Physo129151;rank=1 scaffold_6 . exon 1106310 1106627 . - . ID=Physo129151.1;Parent=Physo129151;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1109458 1111187 . - . ID=Physo129152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60309;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1109458 1111187 . - . ID=Physo129152;Parent=Physo129152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1109458 1109655 . - 0 ID=Physo129152;Parent=Physo129152;rank=4 scaffold_6 . exon 1109458 1109655 . - . ID=Physo129152.4;Parent=Physo129152;constitutive=1;rank=4 scaffold_6 . CDS 1110317 1110709 . - 0 ID=Physo129152;Parent=Physo129152;rank=3 scaffold_6 . exon 1110317 1110709 . - . ID=Physo129152.3;Parent=Physo129152;constitutive=1;rank=3 scaffold_6 . CDS 1110796 1110981 . - 0 ID=Physo129152;Parent=Physo129152;rank=2 scaffold_6 . exon 1110796 1110981 . - . ID=Physo129152.2;Parent=Physo129152;constitutive=1;rank=2 scaffold_6 . CDS 1111080 1111187 . - 0 ID=Physo129152;Parent=Physo129152;rank=1 scaffold_6 . exon 1111080 1111187 . - . ID=Physo129152.1;Parent=Physo129152;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1116264 1117490 . - . ID=Physo129153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60310;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1116264 1117490 . - . ID=Physo129153;Parent=Physo129153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1116264 1117490 . - 0 ID=Physo129153;Parent=Physo129153;rank=1 scaffold_6 . exon 1116264 1117490 . - . ID=Physo129153.1;Parent=Physo129153;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1120735 1128138 . - . ID=Physo155666;biotype=protein_coding;external_name=C_scaffold_6000097;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1120735 1128138 . - . ID=Physo155666;Parent=Physo155666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1120735 1121369 . - 0 ID=Physo155666;Parent=Physo155666;rank=14 scaffold_6 . exon 1120735 1121369 . - . ID=Physo155666.14;Parent=Physo155666;constitutive=1;ensembl_phase=1;rank=14 scaffold_6 . CDS 1121502 1121788 . - 0 ID=Physo155666;Parent=Physo155666;rank=13 scaffold_6 . exon 1121502 1121788 . - . ID=Physo155666.13;Parent=Physo155666;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_6 . CDS 1121834 1122174 . - 0 ID=Physo155666;Parent=Physo155666;rank=12 scaffold_6 . exon 1121834 1122174 . - . ID=Physo155666.12;Parent=Physo155666;constitutive=1;ensembl_end_phase=2;rank=12 scaffold_6 . CDS 1122250 1122513 . - 0 ID=Physo155666;Parent=Physo155666;rank=11 scaffold_6 . CDS 1122550 1122920 . - 0 ID=Physo155666;Parent=Physo155666;rank=10 scaffold_6 . CDS 1122951 1123397 . - 0 ID=Physo155666;Parent=Physo155666;rank=9 scaffold_6 . CDS 1123434 1123782 . - 0 ID=Physo155666;Parent=Physo155666;rank=8 scaffold_6 . CDS 1123864 1124048 . - 0 ID=Physo155666;Parent=Physo155666;rank=7 scaffold_6 . CDS 1124277 1124605 . - 0 ID=Physo155666;Parent=Physo155666;rank=6 scaffold_6 . CDS 1124711 1124849 . - 0 ID=Physo155666;Parent=Physo155666;rank=5 scaffold_6 . CDS 1125198 1125327 . - 0 ID=Physo155666;Parent=Physo155666;rank=4 scaffold_6 . CDS 1125952 1126198 . - 0 ID=Physo155666;Parent=Physo155666;rank=3 scaffold_6 . CDS 1126238 1126470 . - 0 ID=Physo155666;Parent=Physo155666;rank=2 scaffold_6 . CDS 1126861 1128138 . - 0 ID=Physo155666;Parent=Physo155666;rank=1 scaffold_6 . biological_region 1122238 1122240 0.999 - . logic_name=eponine scaffold_6 . biological_region 1122293 1122295 0.999 + . logic_name=eponine scaffold_6 . biological_region 1122739 1122739 0.999 - . logic_name=eponine scaffold_6 . biological_region 1122767 1122772 0.999 - . logic_name=eponine scaffold_6 . biological_region 1124236 1124238 0.999 - . logic_name=eponine scaffold_6 . biological_region 1126215 1126219 0.999 - . logic_name=eponine scaffold_6 . biological_region 1127389 1127392 0.999 + . logic_name=eponine scaffold_6 . biological_region 1127732 1127735 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1129143 1129184 . ? . description=trf scaffold_6 . repeat_region 1130944 1130956 . ? . description=dust scaffold_6 ensembl protein_coding_gene 1128696 1130587 . + . ID=Physo129155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60312;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1128696 1130587 . + . ID=Physo129155;Parent=Physo129155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1128696 1129017 . + 0 ID=Physo129155;Parent=Physo129155;rank=1 scaffold_6 . exon 1128696 1129017 . + . ID=Physo129155.1;Parent=Physo129155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 1129104 1129234 . + 0 ID=Physo129155;Parent=Physo129155;rank=2 scaffold_6 . exon 1129104 1129234 . + . ID=Physo129155.2;Parent=Physo129155;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1129395 1129425 . + 0 ID=Physo129155;Parent=Physo129155;rank=3 scaffold_6 . exon 1129395 1129425 . + . ID=Physo129155.3;Parent=Physo129155;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_6 . CDS 1129507 1129587 . + 0 ID=Physo129155;Parent=Physo129155;rank=4 scaffold_6 . exon 1129507 1129587 . + . ID=Physo129155.4;Parent=Physo129155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 1129655 1129875 . + 0 ID=Physo129155;Parent=Physo129155;rank=5 scaffold_6 . exon 1129655 1129875 . + . ID=Physo129155.5;Parent=Physo129155;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 1129937 1130142 . + 0 ID=Physo129155;Parent=Physo129155;rank=6 scaffold_6 . exon 1129937 1130142 . + . ID=Physo129155.6;Parent=Physo129155;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_6 . CDS 1130210 1130257 . + 0 ID=Physo129155;Parent=Physo129155;rank=7 scaffold_6 . exon 1130210 1130257 . + . ID=Physo129155.7;Parent=Physo129155;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_6 . CDS 1130347 1130439 . + 0 ID=Physo129155;Parent=Physo129155;rank=8 scaffold_6 . exon 1130347 1130439 . + . ID=Physo129155.8;Parent=Physo129155;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_6 . CDS 1130503 1130587 . + 0 ID=Physo129155;Parent=Physo129155;rank=9 scaffold_6 . exon 1130503 1130587 . + . ID=Physo129155.9;Parent=Physo129155;constitutive=1;ensembl_phase=2;rank=9 scaffold_6 . exon 1122250 1122513 . - . ID=Physo155666.11;Parent=Physo155666;constitutive=1;rank=11 scaffold_6 . exon 1122550 1122920 . - . ID=Physo155666.10;Parent=Physo155666;constitutive=1;ensembl_phase=1;rank=10 scaffold_6 . exon 1122951 1123397 . - . ID=Physo155666.9;Parent=Physo155666;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=9 scaffold_6 . exon 1123434 1123782 . - . ID=Physo155666.8;Parent=Physo155666;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_6 . exon 1123864 1124048 . - . ID=Physo155666.7;Parent=Physo155666;constitutive=1;ensembl_phase=1;rank=7 scaffold_6 . exon 1124277 1124605 . - . ID=Physo155666.6;Parent=Physo155666;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_6 . exon 1124711 1124849 . - . ID=Physo155666.5;Parent=Physo155666;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . exon 1125198 1125327 . - . ID=Physo155666.4;Parent=Physo155666;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . exon 1125952 1126198 . - . ID=Physo155666.3;Parent=Physo155666;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . exon 1126238 1126470 . - . ID=Physo155666.2;Parent=Physo155666;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . exon 1126861 1128138 . - . ID=Physo155666.1;Parent=Physo155666;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1130812 1133993 . - . ID=Physo155668;biotype=protein_coding;external_name=C_scaffold_6000099;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1130812 1133993 . - . ID=Physo155668;Parent=Physo155668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1130812 1130939 . - 0 ID=Physo155668;Parent=Physo155668;rank=6 scaffold_6 . exon 1130812 1130939 . - . ID=Physo155668.6;Parent=Physo155668;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 1131014 1132128 . - 0 ID=Physo155668;Parent=Physo155668;rank=5 scaffold_6 . exon 1131014 1132128 . - . ID=Physo155668.5;Parent=Physo155668;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 1132231 1132369 . - 0 ID=Physo155668;Parent=Physo155668;rank=4 scaffold_6 . CDS 1132486 1132566 . - 0 ID=Physo155668;Parent=Physo155668;rank=3 scaffold_6 . CDS 1133152 1133156 . - 0 ID=Physo155668;Parent=Physo155668;rank=2 scaffold_6 . CDS 1133176 1133993 . - 0 ID=Physo155668;Parent=Physo155668;rank=1 scaffold_6 ensembl protein_coding_gene 1140861 1142630 . - . ID=Physo108354;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60044;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1140861 1142630 . - . ID=Physo108354;Parent=Physo108354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1140861 1141052 . - 0 ID=Physo108354;Parent=Physo108354;rank=5 scaffold_6 . exon 1140861 1141052 . - . ID=Physo108354.5;Parent=Physo108354;constitutive=1;rank=5 scaffold_6 . CDS 1141134 1141235 . - 0 ID=Physo108354;Parent=Physo108354;rank=4 scaffold_6 . exon 1141134 1141235 . - . ID=Physo108354.4;Parent=Physo108354;constitutive=1;rank=4 scaffold_6 . CDS 1141297 1141935 . - 0 ID=Physo108354;Parent=Physo108354;rank=3 scaffold_6 . exon 1141297 1141935 . - . ID=Physo108354.3;Parent=Physo108354;constitutive=1;rank=3 scaffold_6 . CDS 1142017 1142129 . - 0 ID=Physo108354;Parent=Physo108354;rank=2 scaffold_6 . exon 1142017 1142129 . - . ID=Physo108354.2;Parent=Physo108354;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1142204 1142630 . - 0 ID=Physo108354;Parent=Physo108354;rank=1 scaffold_6 ensembl protein_coding_gene 1135960 1137852 . - . ID=Physo129157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60314;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1135960 1137852 . - . ID=Physo129157;Parent=Physo129157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1135960 1136023 . - 0 ID=Physo129157;Parent=Physo129157;rank=10 scaffold_6 . exon 1135960 1136023 . - . ID=Physo129157.10;Parent=Physo129157;constitutive=1;ensembl_phase=2;rank=10 scaffold_6 . CDS 1136088 1136180 . - 0 ID=Physo129157;Parent=Physo129157;rank=9 scaffold_6 . exon 1136088 1136180 . - . ID=Physo129157.9;Parent=Physo129157;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_6 . CDS 1136270 1136317 . - 0 ID=Physo129157;Parent=Physo129157;rank=8 scaffold_6 . exon 1136270 1136317 . - . ID=Physo129157.8;Parent=Physo129157;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_6 . CDS 1136385 1136590 . - 0 ID=Physo129157;Parent=Physo129157;rank=7 scaffold_6 . exon 1136385 1136590 . - . ID=Physo129157.7;Parent=Physo129157;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_6 . CDS 1136661 1136881 . - 0 ID=Physo129157;Parent=Physo129157;rank=6 scaffold_6 . exon 1136661 1136881 . - . ID=Physo129157.6;Parent=Physo129157;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 1136952 1137019 . - 0 ID=Physo129157;Parent=Physo129157;rank=5 scaffold_6 . exon 1136952 1137019 . - . ID=Physo129157.5;Parent=Physo129157;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 1137107 1137123 . - 0 ID=Physo129157;Parent=Physo129157;rank=4 scaffold_6 . exon 1137107 1137123 . - . ID=Physo129157.4;Parent=Physo129157;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 1137147 1137221 . - 0 ID=Physo129157;Parent=Physo129157;rank=3 scaffold_6 . exon 1137147 1137221 . - . ID=Physo129157.3;Parent=Physo129157;constitutive=1;rank=3 scaffold_6 . CDS 1137309 1137472 . - 0 ID=Physo129157;Parent=Physo129157;rank=2 scaffold_6 . exon 1137309 1137472 . - . ID=Physo129157.2;Parent=Physo129157;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1137549 1137852 . - 0 ID=Physo129157;Parent=Physo129157;rank=1 scaffold_6 . exon 1137549 1137852 . - . ID=Physo129157.1;Parent=Physo129157;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 1138364 1140534 . + . ID=Physo129158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60315;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1138364 1140534 . + . ID=Physo129158;Parent=Physo129158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1138364 1139125 . + 0 ID=Physo129158;Parent=Physo129158;rank=1 scaffold_6 . exon 1138364 1139125 . + . ID=Physo129158.1;Parent=Physo129158;constitutive=1;rank=1 scaffold_6 . CDS 1139199 1139251 . + 0 ID=Physo129158;Parent=Physo129158;rank=2 scaffold_6 . exon 1139199 1139251 . + . ID=Physo129158.2;Parent=Physo129158;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_6 . CDS 1139340 1139527 . + 0 ID=Physo129158;Parent=Physo129158;rank=3 scaffold_6 . exon 1139340 1139527 . + . ID=Physo129158.3;Parent=Physo129158;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 1139611 1139712 . + 0 ID=Physo129158;Parent=Physo129158;rank=4 scaffold_6 . exon 1139611 1139712 . + . ID=Physo129158.4;Parent=Physo129158;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 1139967 1140034 . + 0 ID=Physo129158;Parent=Physo129158;rank=5 scaffold_6 . exon 1139967 1140034 . + . ID=Physo129158.5;Parent=Physo129158;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . CDS 1140097 1140534 . + 0 ID=Physo129158;Parent=Physo129158;rank=6 scaffold_6 . exon 1140097 1140534 . + . ID=Physo129158.6;Parent=Physo129158;constitutive=1;rank=6 scaffold_6 . exon 1132231 1132369 . - . ID=Physo155668.4;Parent=Physo155668;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_6 . exon 1132486 1132566 . - . ID=Physo155668.3;Parent=Physo155668;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_6 . exon 1133152 1133156 . - . ID=Physo155668.2;Parent=Physo155668;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_6 . exon 1133176 1133993 . - . ID=Physo155668.1;Parent=Physo155668;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . biological_region 1142335 1142340 0.999 - . logic_name=eponine scaffold_6 . biological_region 1142340 1142344 0.999 + . logic_name=eponine scaffold_6 . biological_region 1142389 1142397 0.999 + . logic_name=eponine scaffold_6 . biological_region 1142411 1142417 0.999 + . logic_name=eponine scaffold_6 . biological_region 1142429 1142433 0.999 - . logic_name=eponine scaffold_6 . biological_region 1142514 1142519 0.999 + . logic_name=eponine scaffold_6 . biological_region 1142522 1142527 0.999 - . logic_name=eponine scaffold_6 . biological_region 1142576 1142576 0.999 - . logic_name=eponine scaffold_6 . biological_region 1146179 1146183 0.999 + . logic_name=eponine scaffold_6 . biological_region 1146245 1146249 0.999 - . logic_name=eponine scaffold_6 . biological_region 1146652 1146654 0.999 + . logic_name=eponine scaffold_6 . biological_region 1149132 1149137 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1149417 1149424 . ? . description=dust scaffold_6 . biological_region 1150417 1150425 0.999 + . logic_name=eponine scaffold_6 . biological_region 1150491 1150499 0.999 + . logic_name=eponine scaffold_6 . biological_region 1150793 1150798 0.999 + . logic_name=eponine scaffold_6 . biological_region 1151599 1151599 0.999 + . logic_name=eponine scaffold_6 . exon 1142204 1142630 . - . ID=Physo108354.1;Parent=Physo108354;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 1146059 1147031 . + . ID=Physo129160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60317;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1146059 1147031 . + . ID=Physo129160;Parent=Physo129160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 1146059 1146329 . + . ID=Physo129160.1;Parent=Physo129160;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_6 . CDS 1146103 1146329 . + 0 ID=Physo129160;Parent=Physo129160;rank=1 scaffold_6 . CDS 1146517 1146583 . + 0 ID=Physo129160;Parent=Physo129160;rank=2 scaffold_6 . exon 1146517 1146583 . + . ID=Physo129160.2;Parent=Physo129160;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 . CDS 1146654 1146965 . + 0 ID=Physo129160;Parent=Physo129160;rank=3 scaffold_6 . exon 1146654 1147031 . + . ID=Physo129160.3;Parent=Physo129160;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_6 ensembl protein_coding_gene 1147893 1149298 . - . ID=Physo129161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60318;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1147893 1149298 . - . ID=Physo129161;Parent=Physo129161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1147893 1148077 . - 0 ID=Physo129161;Parent=Physo129161;rank=3 scaffold_6 . exon 1147893 1148077 . - . ID=Physo129161.3;Parent=Physo129161;constitutive=1;ensembl_phase=1;rank=3 scaffold_6 . CDS 1148190 1148354 . - 0 ID=Physo129161;Parent=Physo129161;rank=2 scaffold_6 . exon 1148190 1148354 . - . ID=Physo129161.2;Parent=Physo129161;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1148437 1149298 . - 0 ID=Physo129161;Parent=Physo129161;rank=1 scaffold_6 . exon 1148437 1149298 . - . ID=Physo129161.1;Parent=Physo129161;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 1150118 1151304 . - . ID=Physo129162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60319;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1150118 1151304 . - . ID=Physo129162;Parent=Physo129162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 1150118 1151214 . - . ID=Physo129162.2;Parent=Physo129162;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_6 . CDS 1150326 1151214 . - 0 ID=Physo129162;Parent=Physo129162;rank=2 scaffold_6 . CDS 1151291 1151304 . - 0 ID=Physo129162;Parent=Physo129162;rank=1 scaffold_6 . exon 1151291 1151304 . - . ID=Physo129162.1;Parent=Physo129162;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . repeat_region 1158254 1158394 . ? . description=trf scaffold_6 . repeat_region 1158254 1158397 . ? . description=trf scaffold_6 ensembl protein_coding_gene 1152310 1153867 . + . ID=Physo129163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60320;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1152310 1153867 . + . ID=Physo129163;Parent=Physo129163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1152310 1152505 . + 0 ID=Physo129163;Parent=Physo129163;rank=1 scaffold_6 . exon 1152310 1152505 . + . ID=Physo129163.1;Parent=Physo129163;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 . CDS 1152637 1153801 . + 0 ID=Physo129163;Parent=Physo129163;rank=2 scaffold_6 . exon 1152637 1153801 . + . ID=Physo129163.2;Parent=Physo129163;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 1153855 1153867 . + 0 ID=Physo129163;Parent=Physo129163;rank=3 scaffold_6 . exon 1153855 1153867 . + . ID=Physo129163.3;Parent=Physo129163;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 ensembl protein_coding_gene 1154215 1155426 . - . ID=Physo129164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60321;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1154215 1155426 . - . ID=Physo129164;Parent=Physo129164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1154215 1155426 . - 0 ID=Physo129164;Parent=Physo129164;rank=1 scaffold_6 . exon 1154215 1155426 . - . ID=Physo129164.1;Parent=Physo129164;constitutive=1;rank=1 scaffold_6 . repeat_region 1159333 1169317 . ? . description=dust scaffold_6 . repeat_region 1169890 1169946 . ? . description=dust scaffold_6 . biological_region 1170269 1170271 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1170393 1170442 . ? . description=dust scaffold_6 . biological_region 1170864 1170870 0.999 + . logic_name=eponine scaffold_6 . biological_region 1170880 1170886 0.999 + . logic_name=eponine scaffold_6 . biological_region 1170930 1170933 0.999 - . logic_name=eponine scaffold_6 . biological_region 1170956 1170958 0.999 + . logic_name=eponine scaffold_6 ensembl protein_coding_gene 1169845 1171163 . + . ID=Physo129165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60322;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1169845 1171163 . + . ID=Physo129165;Parent=Physo129165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 1169845 1169878 . + . ID=Physo129165.1;Parent=Physo129165;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 1169851 1169878 . + 0 ID=Physo129165;Parent=Physo129165;rank=1 scaffold_6 . CDS 1169951 1170384 . + 0 ID=Physo129165;Parent=Physo129165;rank=2 scaffold_6 . exon 1169951 1170384 . + . ID=Physo129165.2;Parent=Physo129165;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 . CDS 1170489 1171163 . + 0 ID=Physo129165;Parent=Physo129165;rank=3 scaffold_6 . exon 1170489 1171163 . + . ID=Physo129165.3;Parent=Physo129165;constitutive=1;rank=3 scaffold_6 ensembl protein_coding_gene 1171316 1179251 . + . ID=Physo129166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60323;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1171316 1179251 . + . ID=Physo129166;Parent=Physo129166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1171316 1171606 . + 0 ID=Physo129166;Parent=Physo129166;rank=1 scaffold_6 . exon 1171316 1171606 . + . ID=Physo129166.1;Parent=Physo129166;constitutive=1;rank=1 scaffold_6 . CDS 1171684 1172433 . + 0 ID=Physo129166;Parent=Physo129166;rank=2 scaffold_6 . exon 1171684 1172433 . + . ID=Physo129166.2;Parent=Physo129166;constitutive=1;rank=2 scaffold_6 . CDS 1172595 1173488 . + 0 ID=Physo129166;Parent=Physo129166;rank=3 scaffold_6 . CDS 1173630 1176420 . + 0 ID=Physo129166;Parent=Physo129166;rank=4 scaffold_6 . CDS 1176490 1176590 . + 0 ID=Physo129166;Parent=Physo129166;rank=5 scaffold_6 . CDS 1176894 1179251 . + 0 ID=Physo129166;Parent=Physo129166;rank=6 scaffold_6 . exon 1172595 1173488 . + . ID=Physo129166.3;Parent=Physo129166;constitutive=1;rank=3 scaffold_6 . exon 1173630 1176420 . + . ID=Physo129166.4;Parent=Physo129166;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_6 . exon 1176490 1176590 . + . ID=Physo129166.5;Parent=Physo129166;constitutive=1;ensembl_phase=1;rank=5 scaffold_6 . exon 1176894 1179251 . + . ID=Physo129166.6;Parent=Physo129166;constitutive=1;rank=6 scaffold_6 . repeat_region 1182496 1182504 . ? . description=dust scaffold_6 . repeat_region 1183187 1183211 . ? . description=dust scaffold_6 . repeat_region 1183753 1183761 . ? . description=dust scaffold_6 . repeat_region 1186473 1186490 . ? . description=dust scaffold_6 . biological_region 1190322 1190325 0.999 - . logic_name=eponine scaffold_6 . biological_region 1190999 1191001 0.999 - . logic_name=eponine scaffold_6 . biological_region 1191016 1191020 0.999 - . logic_name=eponine scaffold_6 . biological_region 1191036 1191039 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 1187548 1188168 . + . ID=Physo129167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60324;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1187548 1188168 . + . ID=Physo129167;Parent=Physo129167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 1187548 1187863 . + . ID=Physo129167.1;Parent=Physo129167;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 1187554 1187863 . + 0 ID=Physo129167;Parent=Physo129167;rank=1 scaffold_6 . CDS 1188110 1188168 . + 0 ID=Physo129167;Parent=Physo129167;rank=2 scaffold_6 . exon 1188110 1188168 . + . ID=Physo129167.2;Parent=Physo129167;constitutive=1;ensembl_phase=1;rank=2 scaffold_6 ensembl protein_coding_gene 1189858 1192986 . - . ID=Physo129168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60325;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1189858 1192986 . - . ID=Physo129168;Parent=Physo129168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1189858 1192986 . - 0 ID=Physo129168;Parent=Physo129168;rank=1 scaffold_6 . exon 1189858 1192986 . - . ID=Physo129168.1;Parent=Physo129168;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1197772 1200375 . + . ID=Physo111707;biotype=protein_coding;external_name=estExt_Genewise1.C_60299;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1197772 1200375 . + . ID=Physo111707;Parent=Physo111707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 1197772 1197915 . + . ID=Physo111707.1;Parent=Physo111707;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . CDS 1197796 1197915 . + 0 ID=Physo111707;Parent=Physo111707;rank=1 scaffold_6 . CDS 1197955 1200375 . + 0 ID=Physo111707;Parent=Physo111707;rank=2 scaffold_6 . exon 1197955 1200375 . + . ID=Physo111707.2;Parent=Physo111707;constitutive=1;rank=2 scaffold_6 ensembl protein_coding_gene 1193849 1195381 . - . ID=Physo129169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60326;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1193849 1195381 . - . ID=Physo129169;Parent=Physo129169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1193849 1195123 . - 0 ID=Physo129169;Parent=Physo129169;rank=2 scaffold_6 . exon 1193849 1195123 . - . ID=Physo129169.2;Parent=Physo129169;constitutive=1;rank=2 scaffold_6 . CDS 1195194 1195352 . - 0 ID=Physo129169;Parent=Physo129169;rank=1 scaffold_6 . exon 1195194 1195381 . - . ID=Physo129169.1;Parent=Physo129169;constitutive=1;ensembl_phase=-1;rank=1 scaffold_6 . biological_region 1204020 1204025 0.999 - . logic_name=eponine scaffold_6 . biological_region 1204078 1204079 0.999 + . logic_name=eponine scaffold_6 . biological_region 1204105 1204109 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1204433 1204488 . ? . description=dust scaffold_6 . biological_region 1205955 1205958 0.999 + . logic_name=eponine scaffold_6 . biological_region 1206146 1206147 0.999 - . logic_name=eponine scaffold_6 . biological_region 1206294 1206295 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1206460 1206509 . ? . description=dust scaffold_6 . repeat_region 1206562 1206569 . ? . description=dust scaffold_6 . repeat_region 1206613 1206621 . ? . description=dust scaffold_6 . biological_region 1209443 1209447 0.999 - . logic_name=eponine scaffold_6 . biological_region 1209523 1209523 0.999 + . logic_name=eponine scaffold_6 . biological_region 1210846 1210848 0.999 + . logic_name=eponine scaffold_6 . biological_region 1210969 1210971 0.999 - . logic_name=eponine scaffold_6 . biological_region 1211034 1211035 0.999 - . logic_name=eponine scaffold_6 ensembl protein_coding_gene 1202858 1204435 . - . ID=Physo108355;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_60045;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1202858 1204435 . - . ID=Physo108355;Parent=Physo108355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1202858 1204435 . - 0 ID=Physo108355;Parent=Physo108355;rank=1 scaffold_6 . exon 1202858 1204435 . - . ID=Physo108355.1;Parent=Physo108355;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1207072 1210309 . + . ID=Physo129172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60329;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1207072 1210309 . + . ID=Physo129172;Parent=Physo129172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1207072 1210118 . + 0 ID=Physo129172;Parent=Physo129172;rank=1 scaffold_6 . exon 1207072 1210118 . + . ID=Physo129172.1;Parent=Physo129172;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . CDS 1210198 1210309 . + 0 ID=Physo129172;Parent=Physo129172;rank=2 scaffold_6 . exon 1210198 1210309 . + . ID=Physo129172.2;Parent=Physo129172;constitutive=1;ensembl_phase=2;rank=2 scaffold_6 ensembl protein_coding_gene 1210341 1211076 . - . ID=Physo129173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60330;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1210341 1211076 . - . ID=Physo129173;Parent=Physo129173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . exon 1210341 1211076 . - . ID=Physo129173.1;Parent=Physo129173;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_6 . CDS 1210429 1211076 . - 0 ID=Physo129173;Parent=Physo129173;rank=1 scaffold_6 . repeat_region 1212043 1212073 . ? . description=trf scaffold_6 . repeat_region 1212045 1212073 . ? . description=trf scaffold_6 . repeat_region 1214885 1215020 . - . description=GypsyPi-1c_I-int scaffold_6 . repeat_region 1215541 1216186 . - . description=GypsyPi-1c_I-int scaffold_6 . repeat_region 1216533 1217350 . - . description=GypsyPi-1c_I-int scaffold_6 . repeat_region 1217368 1217839 . - . description=GypsyPi-1c_I-int scaffold_6 . repeat_region 1218442 1218558 . ? . description=trf scaffold_6 . repeat_region 1221427 1221514 . ? . description=trf scaffold_6 ensembl pseudogenic_tRNA 1214328 1214399 . + . ID=EPrPSOG00000000083;biotype=tRNA_pseudogene;description=tRNA-Pseudo for anticodon CCA [Source:TRNASCAN_SE%3BAcc:tRNA-Pseudo];external_name=tRNA-Pseudo;logic_name=ncrna_eg scaffold_6 ensembl transcript 1214328 1214399 . + . ID=EPrPSOT00000000083;Parent=EPrPSOG00000000083;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_6 . exon 1214328 1214399 . + . ID=EPrPSOE00000000083;Parent=EPrPSOT00000000083;constitutive=1;rank=1 scaffold_6 ensembl protein_coding_gene 1214413 1218529 . - . ID=Physo129174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60331;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1214413 1218529 . - . ID=Physo129174;Parent=Physo129174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1214413 1215047 . - 0 ID=Physo129174;Parent=Physo129174;rank=6 scaffold_6 . exon 1214413 1215047 . - . ID=Physo129174.6;Parent=Physo129174;constitutive=1;ensembl_phase=1;rank=6 scaffold_6 . CDS 1215075 1215880 . - 0 ID=Physo129174;Parent=Physo129174;rank=5 scaffold_6 . exon 1215075 1215880 . - . ID=Physo129174.5;Parent=Physo129174;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_6 . CDS 1216089 1216708 . - 0 ID=Physo129174;Parent=Physo129174;rank=4 scaffold_6 . exon 1216089 1216708 . - . ID=Physo129174.4;Parent=Physo129174;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_6 . CDS 1216741 1217311 . - 0 ID=Physo129174;Parent=Physo129174;rank=3 scaffold_6 . exon 1216741 1217311 . - . ID=Physo129174.3;Parent=Physo129174;constitutive=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 1217341 1218318 . - 0 ID=Physo129174;Parent=Physo129174;rank=2 scaffold_6 . exon 1217341 1218318 . - . ID=Physo129174.2;Parent=Physo129174;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_6 . CDS 1218339 1218529 . - 0 ID=Physo129174;Parent=Physo129174;rank=1 scaffold_6 . exon 1218339 1218529 . - . ID=Physo129174.1;Parent=Physo129174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_6 . repeat_region 1223490 1223498 . ? . description=dust scaffold_6 . repeat_region 1223725 1223737 . ? . description=dust scaffold_6 . biological_region 1224220 1224221 0.999 - . logic_name=eponine scaffold_6 . repeat_region 1227620 1227628 . ? . description=dust scaffold_6 . biological_region 1229690 1229694 0.999 + . logic_name=eponine scaffold_6 . biological_region 1229732 1229734 0.999 - . logic_name=eponine scaffold_6 . biological_region 1229806 1229809 0.999 - . logic_name=eponine scaffold_6 ensembl pseudogenic_tRNA 1230826 1230898 . + . ID=EPrPSOG00000000008;biotype=tRNA_pseudogene;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_6 ensembl transcript 1230826 1230898 . + . ID=EPrPSOT00000000008;Parent=EPrPSOG00000000008;biotype=tRNA_pseudogene;logic_name=ncrna_eg scaffold_6 . exon 1230826 1230898 . + . ID=EPrPSOE00000000008;Parent=EPrPSOT00000000008;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_6 ensembl protein_coding_gene 1226076 1229861 . - . ID=Physo129175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_60332;logic_name=jgi_physo1_1 scaffold_6 ensembl transcript 1226076 1229861 . - . ID=Physo129175;Parent=Physo129175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_6 . CDS 1226076 1226313 . - 0 ID=Physo129175;Parent=Physo129175;rank=10 scaffold_6 . exon 1226076 1226313 . - . ID=Physo129175.10;Parent=Physo129175;constitutive=1;ensembl_phase=2;rank=10 scaffold_6 . CDS 1226369 1226579 . - 0 ID=Physo129175;Parent=Physo129175;rank=9 scaffold_6 . exon 1226369 1226579 . - . ID=Physo129175.9;Parent=Physo129175;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_6 . CDS 1227012 1227063 . - 0 ID=Physo129175;Parent=Physo129175;rank=8 scaffold_6 . exon 1227012 1227063 . - . ID=Physo129175.8;Parent=Physo129175;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_6 . CDS 1227339 1227488 . - 0 ID=Physo129175;Parent=Physo129175;rank=7 scaffold_6 . exon 1227339 1227488 . - . ID=Physo129175.7;Parent=Physo129175;constitutive=1;rank=7 scaffold_6 . CDS 1227546 1227552 . - 0 ID=Physo129175;Parent=Physo129175;rank=6 scaffold_6 . exon 1227546 1227552 . - . ID=Physo129175.6;Parent=Physo129175;constitutive=1;ensembl_phase=2;rank=6 scaffold_6 . CDS 1227671 1228364 . - 0 ID=Physo129175;Parent=Physo129175;rank=5 scaffold_6 . exon 1227671 1228364 . - . ID=Physo129175.5;Parent=Physo129175;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_6 . CDS 1228436 1228516 . - 0 ID=Physo129175;Parent=Physo129175;rank=4 scaffold_6 . exon 1228436 1228516 . - . ID=Physo129175.4;Parent=Physo129175;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_6 . CDS 1228592 1228854 . - 0 ID=Physo129175;Parent=Physo129175;rank=3 scaffold_6 . exon 1228592 1228854 . - . ID=Physo129175.3;Parent=Physo129175;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_6 . CDS 1229069 1229567 . - 0 ID=Physo129175;Parent=Physo129175;rank=2 scaffold_6 . exon 1229069 1229567 . - . ID=Physo129175.2;Parent=Physo129175;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_6 . CDS 1229603 1229861 . - 0 ID=Physo129175;Parent=Physo129175;rank=1 scaffold_6 . exon 1229603 1229861 . - . ID=Physo129175.1;Parent=Physo129175;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_5 1 1233725 scaffold_5 . biological_region 276 280 0.999 + . logic_name=eponine scaffold_5 . repeat_region 319 455 . ? . description=trf scaffold_5 . repeat_region 1276 1283 . ? . description=dust scaffold_5 . repeat_region 1806 3182 . ? . description=dust scaffold_5 . repeat_region 3461 3469 . ? . description=dust scaffold_5 . repeat_region 9670 9719 . ? . description=trf scaffold_5 . biological_region 9948 9948 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 6085 7153 . - . ID=Physo128504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50001;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 6085 7153 . - . ID=Physo128504;Parent=Physo128504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 6085 6297 . - 0 ID=Physo128504;Parent=Physo128504;rank=5 scaffold_5 . exon 6085 6297 . - . ID=Physo128504.5;Parent=Physo128504;constitutive=1;rank=5 scaffold_5 . CDS 6364 6473 . - 0 ID=Physo128504;Parent=Physo128504;rank=4 scaffold_5 . exon 6364 6473 . - . ID=Physo128504.4;Parent=Physo128504;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 6567 6597 . - 0 ID=Physo128504;Parent=Physo128504;rank=3 scaffold_5 . exon 6567 6597 . - . ID=Physo128504.3;Parent=Physo128504;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 6717 6791 . - 0 ID=Physo128504;Parent=Physo128504;rank=2 scaffold_5 . exon 6717 6791 . - . ID=Physo128504.2;Parent=Physo128504;constitutive=1;rank=2 scaffold_5 . CDS 6857 7153 . - 0 ID=Physo128504;Parent=Physo128504;rank=1 scaffold_5 . exon 6857 7153 . - . ID=Physo128504.1;Parent=Physo128504;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 8474 9076 . - . ID=Physo128505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50002;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 8474 9076 . - . ID=Physo128505;Parent=Physo128505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 8474 9076 . - 0 ID=Physo128505;Parent=Physo128505;rank=1 scaffold_5 . exon 8474 9076 . - . ID=Physo128505.1;Parent=Physo128505;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 11349 12555 . - . ID=Physo128506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50003;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 11349 12555 . - . ID=Physo128506;Parent=Physo128506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 11349 12400 . - 0 ID=Physo128506;Parent=Physo128506;rank=2 scaffold_5 . exon 11349 12400 . - . ID=Physo128506.2;Parent=Physo128506;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 12531 12555 . - 0 ID=Physo128506;Parent=Physo128506;rank=1 scaffold_5 . exon 12531 12555 . - . ID=Physo128506.1;Parent=Physo128506;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 15266 24386 . - . ID=Physo155477;biotype=protein_coding;external_name=C_scaffold_5000001;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 15266 24386 . - . ID=Physo155477;Parent=Physo155477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 15266 15411 . - 0 ID=Physo155477;Parent=Physo155477;rank=17 scaffold_5 . exon 15266 15411 . - . ID=Physo155477.17;Parent=Physo155477;constitutive=1;ensembl_phase=1;rank=17 scaffold_5 . CDS 15478 15606 . - 0 ID=Physo155477;Parent=Physo155477;rank=16 scaffold_5 . exon 15478 15606 . - . ID=Physo155477.16;Parent=Physo155477;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=16 scaffold_5 . CDS 15655 15951 . - 0 ID=Physo155477;Parent=Physo155477;rank=15 scaffold_5 . exon 15655 15951 . - . ID=Physo155477.15;Parent=Physo155477;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=15 scaffold_5 . CDS 16117 16369 . - 0 ID=Physo155477;Parent=Physo155477;rank=14 scaffold_5 . exon 16117 16369 . - . ID=Physo155477.14;Parent=Physo155477;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_5 . CDS 16433 16828 . - 0 ID=Physo155477;Parent=Physo155477;rank=13 scaffold_5 . exon 16433 16828 . - . ID=Physo155477.13;Parent=Physo155477;constitutive=1;rank=13 scaffold_5 . CDS 16871 17045 . - 0 ID=Physo155477;Parent=Physo155477;rank=12 scaffold_5 . exon 16871 17045 . - . ID=Physo155477.12;Parent=Physo155477;constitutive=1;ensembl_phase=2;rank=12 scaffold_5 . CDS 17107 17855 . - 0 ID=Physo155477;Parent=Physo155477;rank=11 scaffold_5 . exon 17107 17855 . - . ID=Physo155477.11;Parent=Physo155477;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_5 . CDS 17886 18152 . - 0 ID=Physo155477;Parent=Physo155477;rank=10 scaffold_5 . exon 17886 18152 . - . ID=Physo155477.10;Parent=Physo155477;constitutive=1;rank=10 scaffold_5 . CDS 18189 18386 . - 0 ID=Physo155477;Parent=Physo155477;rank=9 scaffold_5 . exon 18189 18386 . - . ID=Physo155477.9;Parent=Physo155477;constitutive=1;rank=9 scaffold_5 . CDS 18420 18904 . - 0 ID=Physo155477;Parent=Physo155477;rank=8 scaffold_5 . exon 18420 18904 . - . ID=Physo155477.8;Parent=Physo155477;constitutive=1;ensembl_phase=1;rank=8 scaffold_5 . CDS 18965 19749 . - 0 ID=Physo155477;Parent=Physo155477;rank=7 scaffold_5 . exon 18965 19749 . - . ID=Physo155477.7;Parent=Physo155477;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_5 . CDS 19780 20123 . - 0 ID=Physo155477;Parent=Physo155477;rank=6 scaffold_5 . exon 19780 20123 . - . ID=Physo155477.6;Parent=Physo155477;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_5 . CDS 20238 20580 . - 0 ID=Physo155477;Parent=Physo155477;rank=5 scaffold_5 . CDS 21061 22742 . - 0 ID=Physo155477;Parent=Physo155477;rank=4 scaffold_5 . CDS 22785 23026 . - 0 ID=Physo155477;Parent=Physo155477;rank=3 scaffold_5 . CDS 23069 24014 . - 0 ID=Physo155477;Parent=Physo155477;rank=2 scaffold_5 . CDS 24048 24386 . - 0 ID=Physo155477;Parent=Physo155477;rank=1 scaffold_5 . biological_region 22313 22317 0.999 + . logic_name=eponine scaffold_5 . repeat_region 22809 22872 . ? . description=trf scaffold_5 . repeat_region 22809 22872 . ? . description=trf scaffold_5 . repeat_region 24155 24194 . ? . description=trf scaffold_5 . repeat_region 24196 24234 . ? . description=trf scaffold_5 . biological_region 24827 24829 0.999 - . logic_name=eponine scaffold_5 . biological_region 29345 29345 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 29748 30896 . + . ID=Physo108286;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50001;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 29748 30896 . + . ID=Physo108286;Parent=Physo108286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 29748 30896 . + 0 ID=Physo108286;Parent=Physo108286;rank=1 scaffold_5 . exon 29748 30896 . + . ID=Physo108286.1;Parent=Physo108286;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 24818 26487 . + . ID=Physo111357;biotype=protein_coding;external_name=estExt_Genewise1.C_50203;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 24818 26487 . + . ID=Physo111357;Parent=Physo111357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 24818 24837 . + . ID=Physo111357.1;Parent=Physo111357;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 24835 24837 . + 0 ID=Physo111357;Parent=Physo111357;rank=1 scaffold_5 . CDS 24928 25319 . + 0 ID=Physo111357;Parent=Physo111357;rank=2 scaffold_5 . exon 24928 25319 . + . ID=Physo111357.2;Parent=Physo111357;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 25397 25529 . + 0 ID=Physo111357;Parent=Physo111357;rank=3 scaffold_5 . exon 25397 25529 . + . ID=Physo111357.3;Parent=Physo111357;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 25612 25710 . + 0 ID=Physo111357;Parent=Physo111357;rank=4 scaffold_5 . exon 25612 25710 . + . ID=Physo111357.4;Parent=Physo111357;constitutive=1;rank=4 scaffold_5 . CDS 25787 26143 . + 0 ID=Physo111357;Parent=Physo111357;rank=5 scaffold_5 . exon 25787 26143 . + . ID=Physo111357.5;Parent=Physo111357;constitutive=1;rank=5 scaffold_5 . CDS 26217 26411 . + 0 ID=Physo111357;Parent=Physo111357;rank=6 scaffold_5 . exon 26217 26487 . + . ID=Physo111357.6;Parent=Physo111357;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_5 ensembl protein_coding_gene 27830 29567 . - . ID=Physo128510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50007;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 27830 29567 . - . ID=Physo128510;Parent=Physo128510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 27830 28818 . - 0 ID=Physo128510;Parent=Physo128510;rank=5 scaffold_5 . exon 27830 28818 . - . ID=Physo128510.5;Parent=Physo128510;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 28890 28950 . - 0 ID=Physo128510;Parent=Physo128510;rank=4 scaffold_5 . exon 28890 28950 . - . ID=Physo128510.4;Parent=Physo128510;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 29104 29368 . - 0 ID=Physo128510;Parent=Physo128510;rank=3 scaffold_5 . exon 29104 29368 . - . ID=Physo128510.3;Parent=Physo128510;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 29408 29453 . - 0 ID=Physo128510;Parent=Physo128510;rank=2 scaffold_5 . exon 29408 29453 . - . ID=Physo128510.2;Parent=Physo128510;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 29552 29567 . - 0 ID=Physo128510;Parent=Physo128510;rank=1 scaffold_5 . exon 29552 29567 . - . ID=Physo128510.1;Parent=Physo128510;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . exon 20238 20580 . - . ID=Physo155477.5;Parent=Physo155477;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 . exon 21061 22742 . - . ID=Physo155477.4;Parent=Physo155477;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . exon 22785 23026 . - . ID=Physo155477.3;Parent=Physo155477;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . exon 23069 24014 . - . ID=Physo155477.2;Parent=Physo155477;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . exon 24048 24386 . - . ID=Physo155477.1;Parent=Physo155477;constitutive=1;rank=1 scaffold_5 . repeat_region 32561 32610 . ? . description=dust scaffold_5 ensembl protein_coding_gene 31025 39381 . - . ID=Physo128512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50009;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 31025 39381 . - . ID=Physo128512;Parent=Physo128512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 31025 31473 . - . ID=Physo128512.8;Parent=Physo128512;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_5 . CDS 31027 31473 . - 0 ID=Physo128512;Parent=Physo128512;rank=8 scaffold_5 . CDS 31549 32354 . - 0 ID=Physo128512;Parent=Physo128512;rank=7 scaffold_5 . exon 31549 32354 . - . ID=Physo128512.7;Parent=Physo128512;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 . CDS 32379 32520 . - 0 ID=Physo128512;Parent=Physo128512;rank=6 scaffold_5 . exon 32379 32520 . - . ID=Physo128512.6;Parent=Physo128512;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_5 . CDS 32671 37844 . - 0 ID=Physo128512;Parent=Physo128512;rank=5 scaffold_5 . exon 32671 37844 . - . ID=Physo128512.5;Parent=Physo128512;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 38027 38198 . - 0 ID=Physo128512;Parent=Physo128512;rank=4 scaffold_5 . exon 38027 38198 . - . ID=Physo128512.4;Parent=Physo128512;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 38299 38475 . - 0 ID=Physo128512;Parent=Physo128512;rank=3 scaffold_5 . exon 38299 38475 . - . ID=Physo128512.3;Parent=Physo128512;constitutive=1;rank=3 scaffold_5 . CDS 38553 38853 . - 0 ID=Physo128512;Parent=Physo128512;rank=2 scaffold_5 . exon 38553 38853 . - . ID=Physo128512.2;Parent=Physo128512;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 38930 39381 . - 0 ID=Physo128512;Parent=Physo128512;rank=1 scaffold_5 . exon 38930 39381 . - . ID=Physo128512.1;Parent=Physo128512;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . biological_region 39885 39888 0.999 + . logic_name=eponine scaffold_5 . repeat_region 40940 40973 . ? . description=trf scaffold_5 . biological_region 41396 41397 0.999 - . logic_name=eponine scaffold_5 . biological_region 41496 41497 0.999 - . logic_name=eponine scaffold_5 . biological_region 41551 41553 0.999 + . logic_name=eponine scaffold_5 . biological_region 42163 42165 0.999 + . logic_name=eponine scaffold_5 . biological_region 42199 42201 0.999 + . logic_name=eponine scaffold_5 . biological_region 42274 42277 0.999 - . logic_name=eponine scaffold_5 . repeat_region 42336 42387 . ? . description=trf scaffold_5 . biological_region 42757 42758 0.999 + . logic_name=eponine scaffold_5 . biological_region 43486 43490 0.999 + . logic_name=eponine scaffold_5 . biological_region 43541 43545 0.999 + . logic_name=eponine scaffold_5 . biological_region 43827 43828 0.999 + . logic_name=eponine scaffold_5 . biological_region 48013 48014 0.999 - . logic_name=eponine scaffold_5 . biological_region 48480 48480 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 47527 48117 . - . ID=Physo128515;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50012;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 47527 48117 . - . ID=Physo128515;Parent=Physo128515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 47527 48117 . - 0 ID=Physo128515;Parent=Physo128515;rank=1 scaffold_5 . exon 47527 48117 . - . ID=Physo128515.1;Parent=Physo128515;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 48619 49123 . - . ID=Physo128516;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50013;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 48619 49123 . - . ID=Physo128516;Parent=Physo128516;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 48619 48998 . - 0 ID=Physo128516;Parent=Physo128516;rank=2 scaffold_5 . exon 48619 48998 . - . ID=Physo128516.2;Parent=Physo128516;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 49063 49123 . - 0 ID=Physo128516;Parent=Physo128516;rank=1 scaffold_5 . exon 49063 49123 . - . ID=Physo128516.1;Parent=Physo128516;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 41399 43320 . + . ID=Physo155480;biotype=protein_coding;external_name=C_scaffold_5000004;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 41399 43320 . + . ID=Physo155480;Parent=Physo155480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 41399 42057 . + . ID=Physo155480.1;Parent=Physo155480;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 41401 42057 . + 0 ID=Physo155480;Parent=Physo155480;rank=1 scaffold_5 . CDS 42136 42699 . + 0 ID=Physo155480;Parent=Physo155480;rank=2 scaffold_5 . exon 42136 42699 . + . ID=Physo155480.2;Parent=Physo155480;constitutive=1;rank=2 scaffold_5 . CDS 42769 43320 . + 0 ID=Physo155480;Parent=Physo155480;rank=3 scaffold_5 . exon 42769 43320 . + . ID=Physo155480.3;Parent=Physo155480;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 43399 44640 . - . ID=Physo155482;biotype=protein_coding;external_name=C_scaffold_5000006;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 43399 44640 . - . ID=Physo155482;Parent=Physo155482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 43399 43574 . - 0 ID=Physo155482;Parent=Physo155482;rank=3 scaffold_5 . exon 43399 43574 . - . ID=Physo155482.3;Parent=Physo155482;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 43689 44363 . - 0 ID=Physo155482;Parent=Physo155482;rank=2 scaffold_5 . exon 43689 44363 . - . ID=Physo155482.2;Parent=Physo155482;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 44457 44640 . - 0 ID=Physo155482;Parent=Physo155482;rank=1 scaffold_5 . exon 44457 44640 . - . ID=Physo155482.1;Parent=Physo155482;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . repeat_region 54450 54457 . ? . description=dust scaffold_5 . repeat_region 55944 55951 . ? . description=dust scaffold_5 ensembl protein_coding_gene 51386 52656 . + . ID=Physo128517;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50014;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 51386 52656 . + . ID=Physo128517;Parent=Physo128517;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 51386 52132 . + 0 ID=Physo128517;Parent=Physo128517;rank=1 scaffold_5 . exon 51386 52132 . + . ID=Physo128517.1;Parent=Physo128517;constitutive=1;rank=1 scaffold_5 . CDS 52258 52656 . + 0 ID=Physo128517;Parent=Physo128517;rank=2 scaffold_5 . exon 52258 52656 . + . ID=Physo128517.2;Parent=Physo128517;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 53168 55275 . - . ID=Physo128518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50015;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 53168 55275 . - . ID=Physo128518;Parent=Physo128518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 53168 54441 . - 0 ID=Physo128518;Parent=Physo128518;rank=2 scaffold_5 . exon 53168 54441 . - . ID=Physo128518.2;Parent=Physo128518;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 54675 55275 . - 0 ID=Physo128518;Parent=Physo128518;rank=1 scaffold_5 . exon 54675 55275 . - . ID=Physo128518.1;Parent=Physo128518;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . biological_region 60876 60879 0.999 + . logic_name=eponine scaffold_5 . repeat_region 61126 61145 . ? . description=trf scaffold_5 . biological_region 61240 61242 0.999 + . logic_name=eponine scaffold_5 . biological_region 67915 67916 0.999 - . logic_name=eponine scaffold_5 . biological_region 69626 69629 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 60733 61978 . + . ID=Physo128519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50016;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 60733 61978 . + . ID=Physo128519;Parent=Physo128519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 60733 60755 . + . ID=Physo128519.1;Parent=Physo128519;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 60744 60755 . + 0 ID=Physo128519;Parent=Physo128519;rank=1 scaffold_5 . CDS 60849 61304 . + 0 ID=Physo128519;Parent=Physo128519;rank=2 scaffold_5 . exon 60849 61304 . + . ID=Physo128519.2;Parent=Physo128519;constitutive=1;rank=2 scaffold_5 . CDS 61388 61978 . + 0 ID=Physo128519;Parent=Physo128519;rank=3 scaffold_5 . exon 61388 61978 . + . ID=Physo128519.3;Parent=Physo128519;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 62070 63438 . - . ID=Physo128520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50017;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 62070 63438 . - . ID=Physo128520;Parent=Physo128520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 62070 63353 . - 0 ID=Physo128520;Parent=Physo128520;rank=2 scaffold_5 . exon 62070 63353 . - . ID=Physo128520.2;Parent=Physo128520;constitutive=1;rank=2 scaffold_5 . CDS 63415 63438 . - 0 ID=Physo128520;Parent=Physo128520;rank=1 scaffold_5 . exon 63415 63438 . - . ID=Physo128520.1;Parent=Physo128520;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 63695 68467 . + . ID=Physo128521;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50018;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 63695 68467 . + . ID=Physo128521;Parent=Physo128521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 63695 64363 . + 0 ID=Physo128521;Parent=Physo128521;rank=1 scaffold_5 . exon 63695 64363 . + . ID=Physo128521.1;Parent=Physo128521;constitutive=1;rank=1 scaffold_5 . CDS 64678 65520 . + 0 ID=Physo128521;Parent=Physo128521;rank=2 scaffold_5 . exon 64678 65520 . + . ID=Physo128521.2;Parent=Physo128521;constitutive=1;rank=2 scaffold_5 . CDS 65748 65831 . + 0 ID=Physo128521;Parent=Physo128521;rank=3 scaffold_5 . exon 65748 65831 . + . ID=Physo128521.3;Parent=Physo128521;constitutive=1;rank=3 scaffold_5 . CDS 65895 65981 . + 0 ID=Physo128521;Parent=Physo128521;rank=4 scaffold_5 . exon 65895 65981 . + . ID=Physo128521.4;Parent=Physo128521;constitutive=1;rank=4 scaffold_5 . CDS 66057 66233 . + 0 ID=Physo128521;Parent=Physo128521;rank=5 scaffold_5 . exon 66057 66233 . + . ID=Physo128521.5;Parent=Physo128521;constitutive=1;rank=5 scaffold_5 . CDS 66313 66480 . + 0 ID=Physo128521;Parent=Physo128521;rank=6 scaffold_5 . exon 66313 66480 . + . ID=Physo128521.6;Parent=Physo128521;constitutive=1;rank=6 scaffold_5 . CDS 66565 67073 . + 0 ID=Physo128521;Parent=Physo128521;rank=7 scaffold_5 . exon 66565 67073 . + . ID=Physo128521.7;Parent=Physo128521;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_5 . CDS 67207 67501 . + 0 ID=Physo128521;Parent=Physo128521;rank=8 scaffold_5 . exon 67207 67501 . + . ID=Physo128521.8;Parent=Physo128521;constitutive=1;ensembl_phase=2;rank=8 scaffold_5 . CDS 67576 67644 . + 0 ID=Physo128521;Parent=Physo128521;rank=9 scaffold_5 . exon 67576 67644 . + . ID=Physo128521.9;Parent=Physo128521;constitutive=1;rank=9 scaffold_5 . CDS 67723 67792 . + 0 ID=Physo128521;Parent=Physo128521;rank=10 scaffold_5 . exon 67723 67792 . + . ID=Physo128521.10;Parent=Physo128521;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_5 . CDS 67865 68048 . + 0 ID=Physo128521;Parent=Physo128521;rank=11 scaffold_5 . exon 67865 68048 . + . ID=Physo128521.11;Parent=Physo128521;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_5 . CDS 68128 68467 . + 0 ID=Physo128521;Parent=Physo128521;rank=12 scaffold_5 . exon 68128 68467 . + . ID=Physo128521.12;Parent=Physo128521;constitutive=1;ensembl_phase=2;rank=12 scaffold_5 ensembl protein_coding_gene 74723 75927 . + . ID=Physo128526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50023;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 74723 75927 . + . ID=Physo128526;Parent=Physo128526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 74723 75927 . + . ID=Physo128526.1;Parent=Physo128526;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 74761 75927 . + 0 ID=Physo128526;Parent=Physo128526;rank=1 scaffold_5 ensembl protein_coding_gene 76060 77175 . - . ID=Physo128527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50024;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 76060 77175 . - . ID=Physo128527;Parent=Physo128527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 76060 76420 . - 0 ID=Physo128527;Parent=Physo128527;rank=4 scaffold_5 . exon 76060 76420 . - . ID=Physo128527.4;Parent=Physo128527;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 76494 76650 . - 0 ID=Physo128527;Parent=Physo128527;rank=3 scaffold_5 . exon 76494 76650 . - . ID=Physo128527.3;Parent=Physo128527;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_5 . CDS 76749 76887 . - 0 ID=Physo128527;Parent=Physo128527;rank=2 scaffold_5 . exon 76749 76887 . - . ID=Physo128527.2;Parent=Physo128527;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 76957 77175 . - 0 ID=Physo128527;Parent=Physo128527;rank=1 scaffold_5 . exon 76957 77175 . - . ID=Physo128527.1;Parent=Physo128527;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 77316 78046 . - . ID=Physo128528;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50025;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 77316 78046 . - . ID=Physo128528;Parent=Physo128528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 77316 77606 . - 0 ID=Physo128528;Parent=Physo128528;rank=3 scaffold_5 . exon 77316 77606 . - . ID=Physo128528.3;Parent=Physo128528;constitutive=1;rank=3 scaffold_5 . CDS 77668 77736 . - 0 ID=Physo128528;Parent=Physo128528;rank=2 scaffold_5 . exon 77668 77736 . - . ID=Physo128528.2;Parent=Physo128528;constitutive=1;rank=2 scaffold_5 . CDS 77849 78046 . - 0 ID=Physo128528;Parent=Physo128528;rank=1 scaffold_5 . exon 77849 78046 . - . ID=Physo128528.1;Parent=Physo128528;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 78563 79610 . - . ID=Physo128529;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50026;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 78563 79610 . - . ID=Physo128529;Parent=Physo128529;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 78563 78878 . - 0 ID=Physo128529;Parent=Physo128529;rank=4 scaffold_5 . exon 78563 78878 . - . ID=Physo128529.4;Parent=Physo128529;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 78964 79156 . - 0 ID=Physo128529;Parent=Physo128529;rank=3 scaffold_5 . exon 78964 79156 . - . ID=Physo128529.3;Parent=Physo128529;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_5 . CDS 79230 79299 . - 0 ID=Physo128529;Parent=Physo128529;rank=2 scaffold_5 . exon 79230 79299 . - . ID=Physo128529.2;Parent=Physo128529;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 79377 79610 . - 0 ID=Physo128529;Parent=Physo128529;rank=1 scaffold_5 . exon 79377 79610 . - . ID=Physo128529.1;Parent=Physo128529;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 70229 71098 . + . ID=Physo155483;biotype=protein_coding;external_name=C_scaffold_5000007;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 70229 71098 . + . ID=Physo155483;Parent=Physo155483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 70229 71098 . + 0 ID=Physo155483;Parent=Physo155483;rank=1 scaffold_5 . exon 70229 71098 . + . ID=Physo155483.1;Parent=Physo155483;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 71486 73758 . + . ID=Physo155484;biotype=protein_coding;external_name=C_scaffold_5000008;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 71486 73758 . + . ID=Physo155484;Parent=Physo155484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 71486 71933 . + 0 ID=Physo155484;Parent=Physo155484;rank=1 scaffold_5 . exon 71486 71933 . + . ID=Physo155484.1;Parent=Physo155484;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 72147 72310 . + 0 ID=Physo155484;Parent=Physo155484;rank=2 scaffold_5 . exon 72147 72310 . + . ID=Physo155484.2;Parent=Physo155484;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 72488 72643 . + 0 ID=Physo155484;Parent=Physo155484;rank=3 scaffold_5 . exon 72488 72643 . + . ID=Physo155484.3;Parent=Physo155484;constitutive=1;rank=3 scaffold_5 . CDS 73129 73320 . + 0 ID=Physo155484;Parent=Physo155484;rank=4 scaffold_5 . exon 73129 73320 . + . ID=Physo155484.4;Parent=Physo155484;constitutive=1;rank=4 scaffold_5 . CDS 73399 73758 . + 0 ID=Physo155484;Parent=Physo155484;rank=5 scaffold_5 . exon 73399 73758 . + . ID=Physo155484.5;Parent=Physo155484;constitutive=1;rank=5 scaffold_5 . biological_region 81400 81405 0.999 - . logic_name=eponine scaffold_5 . biological_region 81464 81471 0.999 - . logic_name=eponine scaffold_5 . biological_region 81521 81523 0.999 + . logic_name=eponine scaffold_5 . biological_region 82068 82071 0.999 - . logic_name=eponine scaffold_5 . biological_region 82075 82076 0.999 + . logic_name=eponine scaffold_5 . biological_region 82367 82368 0.999 - . logic_name=eponine scaffold_5 . biological_region 84515 84519 0.999 - . logic_name=eponine scaffold_5 . biological_region 84885 84885 0.999 + . logic_name=eponine scaffold_5 . biological_region 84918 84920 0.999 + . logic_name=eponine scaffold_5 . biological_region 84938 84943 0.999 - . logic_name=eponine scaffold_5 . biological_region 84994 84999 0.999 + . logic_name=eponine scaffold_5 . biological_region 85093 85097 0.999 - . logic_name=eponine scaffold_5 . biological_region 86130 86130 0.999 - . logic_name=eponine scaffold_5 . biological_region 87248 87250 0.999 - . logic_name=eponine scaffold_5 . biological_region 87275 87276 0.999 + . logic_name=eponine scaffold_5 . biological_region 88248 88252 0.999 + . logic_name=eponine scaffold_5 . biological_region 88269 88274 0.999 + . logic_name=eponine scaffold_5 . biological_region 88324 88325 0.999 + . logic_name=eponine scaffold_5 . biological_region 88453 88455 0.999 + . logic_name=eponine scaffold_5 . biological_region 88620 88620 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 80891 81889 . - . ID=Physo128530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50027;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 80891 81889 . - . ID=Physo128530;Parent=Physo128530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 80891 81889 . - 0 ID=Physo128530;Parent=Physo128530;rank=1 scaffold_5 . exon 80891 81889 . - . ID=Physo128530.1;Parent=Physo128530;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 83731 85103 . - . ID=Physo128531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50028;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 83731 85103 . - . ID=Physo128531;Parent=Physo128531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 83731 84678 . - 0 ID=Physo128531;Parent=Physo128531;rank=2 scaffold_5 . exon 83731 84678 . - . ID=Physo128531.2;Parent=Physo128531;constitutive=1;rank=2 scaffold_5 . CDS 84831 85103 . - 0 ID=Physo128531;Parent=Physo128531;rank=1 scaffold_5 . exon 84831 85103 . - . ID=Physo128531.1;Parent=Physo128531;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 85473 88361 . - . ID=Physo128532;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50029;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 85473 88361 . - . ID=Physo128532;Parent=Physo128532;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 85473 88361 . - 0 ID=Physo128532;Parent=Physo128532;rank=1 scaffold_5 . exon 85473 88361 . - . ID=Physo128532.1;Parent=Physo128532;constitutive=1;rank=1 scaffold_5 . repeat_region 94646 94653 . ? . description=dust scaffold_5 . repeat_region 97383 97410 . ? . description=trf scaffold_5 . repeat_region 97388 97413 . ? . description=trf scaffold_5 . repeat_region 97754 97780 . ? . description=trf scaffold_5 . repeat_region 97962 98003 . ? . description=trf scaffold_5 . repeat_region 98053 98101 . ? . description=dust scaffold_5 ensembl protein_coding_gene 99102 99872 . + . ID=Physo108288;biotype=protein_coding;description=Putative uncharacterized protein [Source:UniProtKB/TrEMBL%3BAcc:Q84XT2];external_name=estExt_fgenesh1_pm.C_50003;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 99102 99872 . + . ID=Physo108288;Parent=Physo108288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 99102 99872 . + . ID=Physo108288.1;Parent=Physo108288;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 99152 99706 . + 0 ID=Physo108288;Parent=Physo108288;rank=1 scaffold_5 ensembl protein_coding_gene 94813 96762 . + . ID=Physo128533;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50030;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 94813 96762 . + . ID=Physo128533;Parent=Physo128533;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 94813 96762 . + 0 ID=Physo128533;Parent=Physo128533;rank=1 scaffold_5 . exon 94813 96762 . + . ID=Physo128533.1;Parent=Physo128533;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 97531 98241 . + . ID=Physo128534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50031;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 97531 98241 . + . ID=Physo128534;Parent=Physo128534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 97531 98169 . + 0 ID=Physo128534;Parent=Physo128534;rank=1 scaffold_5 . exon 97531 98241 . + . ID=Physo128534.1;Parent=Physo128534;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . biological_region 99584 99588 0.999 - . logic_name=eponine scaffold_5 . biological_region 99642 99644 0.999 - . logic_name=eponine scaffold_5 . biological_region 100303 100305 0.999 - . logic_name=eponine scaffold_5 . biological_region 102136 102139 0.999 + . logic_name=eponine scaffold_5 . biological_region 102247 102249 0.999 - . logic_name=eponine scaffold_5 . biological_region 102502 102504 0.999 - . logic_name=eponine scaffold_5 . biological_region 102559 102564 0.999 - . logic_name=eponine scaffold_5 . biological_region 102635 102641 0.999 + . logic_name=eponine scaffold_5 . biological_region 102643 102652 0.999 - . logic_name=eponine scaffold_5 . biological_region 102719 102722 0.999 + . logic_name=eponine scaffold_5 . biological_region 103735 103737 0.999 - . logic_name=eponine scaffold_5 . biological_region 104948 104950 0.999 + . logic_name=eponine scaffold_5 . biological_region 105035 105037 0.999 - . logic_name=eponine scaffold_5 . biological_region 106295 106298 0.999 + . logic_name=eponine scaffold_5 . repeat_region 106617 106905 . - . description=GypsyPi-1c_LTR scaffold_5 . biological_region 109131 109133 0.999 - . logic_name=eponine scaffold_5 . repeat_region 109358 109542 . - . description=GypsyPi-1c_I-int scaffold_5 ensembl protein_coding_gene 100978 101615 . + . ID=Physo128536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50033;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 100978 101615 . + . ID=Physo128536;Parent=Physo128536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 100978 101529 . + 0 ID=Physo128536;Parent=Physo128536;rank=1 scaffold_5 . exon 100978 101615 . + . ID=Physo128536.1;Parent=Physo128536;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 101752 102984 . - . ID=Physo128537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50034;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 101752 102984 . - . ID=Physo128537;Parent=Physo128537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 101752 102984 . - 0 ID=Physo128537;Parent=Physo128537;rank=1 scaffold_5 . exon 101752 102984 . - . ID=Physo128537.1;Parent=Physo128537;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 104105 105124 . - . ID=Physo128538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50035;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 104105 105124 . - . ID=Physo128538;Parent=Physo128538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 104105 105124 . - 0 ID=Physo128538;Parent=Physo128538;rank=1 scaffold_5 . exon 104105 105124 . - . ID=Physo128538.1;Parent=Physo128538;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 105654 106880 . - . ID=Physo128539;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50036;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 105654 106880 . - . ID=Physo128539;Parent=Physo128539;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 105654 105771 . - 0 ID=Physo128539;Parent=Physo128539;rank=4 scaffold_5 . exon 105654 105771 . - . ID=Physo128539.4;Parent=Physo128539;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 106088 106597 . - 0 ID=Physo128539;Parent=Physo128539;rank=3 scaffold_5 . exon 106088 106597 . - . ID=Physo128539.3;Parent=Physo128539;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_5 . CDS 106690 106718 . - 0 ID=Physo128539;Parent=Physo128539;rank=2 scaffold_5 . exon 106690 106718 . - . ID=Physo128539.2;Parent=Physo128539;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 106845 106880 . - 0 ID=Physo128539;Parent=Physo128539;rank=1 scaffold_5 . exon 106845 106880 . - . ID=Physo128539.1;Parent=Physo128539;constitutive=1;rank=1 scaffold_5 . repeat_region 109379 109664 . ? . description=trf scaffold_5 . repeat_region 112530 112539 . ? . description=dust scaffold_5 . repeat_region 114860 114883 . ? . description=dust scaffold_5 . repeat_region 114860 114883 . ? . description=trf scaffold_5 . repeat_region 115564 115595 . ? . description=dust scaffold_5 . repeat_region 115564 115595 . ? . description=trf scaffold_5 . repeat_region 115606 115700 . ? . description=trf scaffold_5 . repeat_region 118504 118554 . + . description=(CAT)n scaffold_5 . repeat_region 118524 118554 . ? . description=dust scaffold_5 . repeat_region 118705 118736 . ? . description=trf scaffold_5 . repeat_region 118752 118797 . ? . description=dust scaffold_5 . repeat_region 118756 118799 . ? . description=trf scaffold_5 ensembl protein_coding_gene 110566 112138 . - . ID=Physo128540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50037;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 110566 112138 . - . ID=Physo128540;Parent=Physo128540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 110566 111011 . - 0 ID=Physo128540;Parent=Physo128540;rank=4 scaffold_5 . exon 110566 111011 . - . ID=Physo128540.4;Parent=Physo128540;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 111267 111492 . - 0 ID=Physo128540;Parent=Physo128540;rank=3 scaffold_5 . exon 111267 111492 . - . ID=Physo128540.3;Parent=Physo128540;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 111546 111575 . - 0 ID=Physo128540;Parent=Physo128540;rank=2 scaffold_5 . exon 111546 111575 . - . ID=Physo128540.2;Parent=Physo128540;constitutive=1;rank=2 scaffold_5 . CDS 111914 112138 . - 0 ID=Physo128540;Parent=Physo128540;rank=1 scaffold_5 . exon 111914 112138 . - . ID=Physo128540.1;Parent=Physo128540;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 118500 122287 . - . ID=Physo128543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50040;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 118500 122287 . - . ID=Physo128543;Parent=Physo128543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 118500 118971 . - 0 ID=Physo128543;Parent=Physo128543;rank=8 scaffold_5 . exon 118500 118971 . - . ID=Physo128543.8;Parent=Physo128543;constitutive=1;ensembl_phase=2;rank=8 scaffold_5 . CDS 119161 119988 . - 0 ID=Physo128543;Parent=Physo128543;rank=7 scaffold_5 . exon 119161 119988 . - . ID=Physo128543.7;Parent=Physo128543;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_5 . CDS 120273 120434 . - 0 ID=Physo128543;Parent=Physo128543;rank=6 scaffold_5 . CDS 120637 120701 . - 0 ID=Physo128543;Parent=Physo128543;rank=5 scaffold_5 . CDS 120772 121188 . - 0 ID=Physo128543;Parent=Physo128543;rank=4 scaffold_5 . CDS 121282 121374 . - 0 ID=Physo128543;Parent=Physo128543;rank=3 scaffold_5 . CDS 121631 121720 . - 0 ID=Physo128543;Parent=Physo128543;rank=2 scaffold_5 . CDS 121805 122287 . - 0 ID=Physo128543;Parent=Physo128543;rank=1 scaffold_5 ensembl protein_coding_gene 112846 113751 . - . ID=Physo155486;biotype=protein_coding;external_name=C_scaffold_5000010;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 112846 113751 . - . ID=Physo155486;Parent=Physo155486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 112846 113751 . - 0 ID=Physo155486;Parent=Physo155486;rank=1 scaffold_5 . exon 112846 113751 . - . ID=Physo155486.1;Parent=Physo155486;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 114663 117368 . + . ID=Physo155487;biotype=protein_coding;external_name=C_scaffold_5000011;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 114663 117368 . + . ID=Physo155487;Parent=Physo155487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 114663 114853 . + 0 ID=Physo155487;Parent=Physo155487;rank=1 scaffold_5 . exon 114663 114853 . + . ID=Physo155487.1;Parent=Physo155487;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 114968 115034 . + 0 ID=Physo155487;Parent=Physo155487;rank=2 scaffold_5 . exon 114968 115034 . + . ID=Physo155487.2;Parent=Physo155487;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 115110 115263 . + 0 ID=Physo155487;Parent=Physo155487;rank=3 scaffold_5 . exon 115110 115263 . + . ID=Physo155487.3;Parent=Physo155487;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 115346 115409 . + 0 ID=Physo155487;Parent=Physo155487;rank=4 scaffold_5 . exon 115346 115409 . + . ID=Physo155487.4;Parent=Physo155487;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . CDS 115763 115835 . + 0 ID=Physo155487;Parent=Physo155487;rank=5 scaffold_5 . exon 115763 115835 . + . ID=Physo155487.5;Parent=Physo155487;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 115940 116007 . + 0 ID=Physo155487;Parent=Physo155487;rank=6 scaffold_5 . exon 115940 116007 . + . ID=Physo155487.6;Parent=Physo155487;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_5 . CDS 116071 116179 . + 0 ID=Physo155487;Parent=Physo155487;rank=7 scaffold_5 . exon 116071 116179 . + . ID=Physo155487.7;Parent=Physo155487;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . CDS 116225 116759 . + 0 ID=Physo155487;Parent=Physo155487;rank=8 scaffold_5 . exon 116225 116759 . + . ID=Physo155487.8;Parent=Physo155487;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_5 . CDS 116822 117330 . + 0 ID=Physo155487;Parent=Physo155487;rank=9 scaffold_5 . exon 116822 117330 . + . ID=Physo155487.9;Parent=Physo155487;constitutive=1;ensembl_phase=1;rank=9 scaffold_5 . CDS 117366 117368 . + 0 ID=Physo155487;Parent=Physo155487;rank=10 scaffold_5 . exon 117366 117368 . + . ID=Physo155487.10;Parent=Physo155487;constitutive=1;rank=10 scaffold_5 ensembl protein_coding_gene 123286 125058 . - . ID=Physo108289;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50004;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 123286 125058 . - . ID=Physo108289;Parent=Physo108289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 123286 123645 . - 0 ID=Physo108289;Parent=Physo108289;rank=2 scaffold_5 . exon 123286 123645 . - . ID=Physo108289.2;Parent=Physo108289;constitutive=1;rank=2 scaffold_5 . CDS 123682 125058 . - 0 ID=Physo108289;Parent=Physo108289;rank=1 scaffold_5 . exon 123682 125058 . - . ID=Physo108289.1;Parent=Physo108289;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 126030 126545 . + . ID=Physo108290;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50005;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 126030 126545 . + . ID=Physo108290;Parent=Physo108290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 126030 126332 . + 0 ID=Physo108290;Parent=Physo108290;rank=1 scaffold_5 . exon 126030 126332 . + . ID=Physo108290.1;Parent=Physo108290;constitutive=1;rank=1 scaffold_5 . CDS 126408 126545 . + 0 ID=Physo108290;Parent=Physo108290;rank=2 scaffold_5 . exon 126408 126545 . + . ID=Physo108290.2;Parent=Physo108290;constitutive=1;rank=2 scaffold_5 . exon 120273 120434 . - . ID=Physo128543.6;Parent=Physo128543;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_5 . exon 120637 120701 . - . ID=Physo128543.5;Parent=Physo128543;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . exon 120772 121188 . - . ID=Physo128543.4;Parent=Physo128543;constitutive=1;rank=4 scaffold_5 . exon 121282 121374 . - . ID=Physo128543.3;Parent=Physo128543;constitutive=1;rank=3 scaffold_5 . exon 121631 121720 . - . ID=Physo128543.2;Parent=Physo128543;constitutive=1;rank=2 scaffold_5 . exon 121805 122287 . - . ID=Physo128543.1;Parent=Physo128543;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 122403 123148 . - . ID=Physo128544;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50041;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 122403 123148 . - . ID=Physo128544;Parent=Physo128544;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 122403 122471 . - 0 ID=Physo128544;Parent=Physo128544;rank=4 scaffold_5 . exon 122403 122471 . - . ID=Physo128544.4;Parent=Physo128544;constitutive=1;rank=4 scaffold_5 . CDS 122550 122666 . - 0 ID=Physo128544;Parent=Physo128544;rank=3 scaffold_5 . exon 122550 122666 . - . ID=Physo128544.3;Parent=Physo128544;constitutive=1;rank=3 scaffold_5 . CDS 122731 123006 . - 0 ID=Physo128544;Parent=Physo128544;rank=2 scaffold_5 . exon 122731 123006 . - . ID=Physo128544.2;Parent=Physo128544;constitutive=1;rank=2 scaffold_5 . CDS 123110 123148 . - 0 ID=Physo128544;Parent=Physo128544;rank=1 scaffold_5 . exon 123110 123148 . - . ID=Physo128544.1;Parent=Physo128544;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 126850 130342 . - . ID=Physo128547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50044;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 126850 130342 . - . ID=Physo128547;Parent=Physo128547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 126850 127179 . - . ID=Physo128547.5;Parent=Physo128547;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_5 . CDS 126943 127179 . - 0 ID=Physo128547;Parent=Physo128547;rank=5 scaffold_5 . CDS 127256 127917 . - 0 ID=Physo128547;Parent=Physo128547;rank=4 scaffold_5 . exon 127256 127917 . - . ID=Physo128547.4;Parent=Physo128547;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 127988 129656 . - 0 ID=Physo128547;Parent=Physo128547;rank=3 scaffold_5 . exon 127988 129656 . - . ID=Physo128547.3;Parent=Physo128547;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 129730 129793 . - 0 ID=Physo128547;Parent=Physo128547;rank=2 scaffold_5 . CDS 129861 130342 . - 0 ID=Physo128547;Parent=Physo128547;rank=1 scaffold_5 . repeat_region 130454 130464 . ? . description=dust scaffold_5 . biological_region 131299 131303 0.999 - . logic_name=eponine scaffold_5 . biological_region 131330 131332 0.999 + . logic_name=eponine scaffold_5 . biological_region 131352 131358 0.999 + . logic_name=eponine scaffold_5 . biological_region 131449 131455 0.999 - . logic_name=eponine scaffold_5 . biological_region 131484 131490 0.999 - . logic_name=eponine scaffold_5 . biological_region 131695 131697 0.999 - . logic_name=eponine scaffold_5 . biological_region 131736 131740 0.999 - . logic_name=eponine scaffold_5 . biological_region 134781 134783 0.999 + . logic_name=eponine scaffold_5 . biological_region 135015 135017 0.999 + . logic_name=eponine scaffold_5 . biological_region 135111 135114 0.999 + . logic_name=eponine scaffold_5 . biological_region 135136 135136 0.999 + . logic_name=eponine scaffold_5 . repeat_region 135142 135191 . ? . description=trf scaffold_5 . biological_region 135167 135170 0.999 - . logic_name=eponine scaffold_5 . biological_region 135256 135259 0.999 - . logic_name=eponine scaffold_5 . biological_region 139029 139034 0.999 + . logic_name=eponine scaffold_5 . exon 129730 129793 . - . ID=Physo128547.2;Parent=Physo128547;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . exon 129861 130342 . - . ID=Physo128547.1;Parent=Physo128547;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 131234 133157 . + . ID=Physo128548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50045;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 131234 133157 . + . ID=Physo128548;Parent=Physo128548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 131234 131794 . + 0 ID=Physo128548;Parent=Physo128548;rank=1 scaffold_5 . exon 131234 131794 . + . ID=Physo128548.1;Parent=Physo128548;constitutive=1;rank=1 scaffold_5 . CDS 131879 133109 . + 0 ID=Physo128548;Parent=Physo128548;rank=2 scaffold_5 . exon 131879 133109 . + . ID=Physo128548.2;Parent=Physo128548;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 133138 133157 . + 0 ID=Physo128548;Parent=Physo128548;rank=3 scaffold_5 . exon 133138 133157 . + . ID=Physo128548.3;Parent=Physo128548;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 ensembl protein_coding_gene 133866 135249 . - . ID=Physo128549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50046;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 133866 135249 . - . ID=Physo128549;Parent=Physo128549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 133866 134063 . - 0 ID=Physo128549;Parent=Physo128549;rank=2 scaffold_5 . exon 133866 134063 . - . ID=Physo128549.2;Parent=Physo128549;constitutive=1;rank=2 scaffold_5 . CDS 134140 135249 . - 0 ID=Physo128549;Parent=Physo128549;rank=1 scaffold_5 . exon 134140 135249 . - . ID=Physo128549.1;Parent=Physo128549;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 137222 138715 . - . ID=Physo128550;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50047;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 137222 138715 . - . ID=Physo128550;Parent=Physo128550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 137222 138715 . - . ID=Physo128550.1;Parent=Physo128550;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . CDS 137243 138715 . - 0 ID=Physo128550;Parent=Physo128550;rank=1 scaffold_5 ensembl protein_coding_gene 140671 142215 . + . ID=Physo128551;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50048;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 140671 142215 . + . ID=Physo128551;Parent=Physo128551;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 140671 142215 . + 0 ID=Physo128551;Parent=Physo128551;rank=1 scaffold_5 . exon 140671 142215 . + . ID=Physo128551.1;Parent=Physo128551;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 144070 146405 . + . ID=Physo128553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50050;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 144070 146405 . + . ID=Physo128553;Parent=Physo128553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 144070 145274 . + 0 ID=Physo128553;Parent=Physo128553;rank=1 scaffold_5 . exon 144070 145274 . + . ID=Physo128553.1;Parent=Physo128553;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 145369 145459 . + 0 ID=Physo128553;Parent=Physo128553;rank=2 scaffold_5 . exon 145369 145459 . + . ID=Physo128553.2;Parent=Physo128553;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 145635 146405 . + 0 ID=Physo128553;Parent=Physo128553;rank=3 scaffold_5 . exon 145635 146405 . + . ID=Physo128553.3;Parent=Physo128553;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 146735 148851 . + . ID=Physo128554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50051;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 146735 148851 . + . ID=Physo128554;Parent=Physo128554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 146735 148302 . + 0 ID=Physo128554;Parent=Physo128554;rank=1 scaffold_5 . exon 146735 148302 . + . ID=Physo128554.1;Parent=Physo128554;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 148395 148851 . + 0 ID=Physo128554;Parent=Physo128554;rank=2 scaffold_5 . exon 148395 148851 . + . ID=Physo128554.2;Parent=Physo128554;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 148916 149290 . - . ID=Physo128555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50052;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 148916 149290 . - . ID=Physo128555;Parent=Physo128555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 148916 149290 . - 0 ID=Physo128555;Parent=Physo128555;rank=1 scaffold_5 . exon 148916 149290 . - . ID=Physo128555.1;Parent=Physo128555;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 142357 143925 . - . ID=Physo155488;biotype=protein_coding;external_name=C_scaffold_5000012;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 142357 143925 . - . ID=Physo155488;Parent=Physo155488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 142357 142505 . - 0 ID=Physo155488;Parent=Physo155488;rank=5 scaffold_5 . exon 142357 142505 . - . ID=Physo155488.5;Parent=Physo155488;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 142533 143101 . - 0 ID=Physo155488;Parent=Physo155488;rank=4 scaffold_5 . exon 142533 143101 . - . ID=Physo155488.4;Parent=Physo155488;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 143170 143297 . - 0 ID=Physo155488;Parent=Physo155488;rank=3 scaffold_5 . exon 143170 143297 . - . ID=Physo155488.3;Parent=Physo155488;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 143362 143463 . - 0 ID=Physo155488;Parent=Physo155488;rank=2 scaffold_5 . exon 143362 143463 . - . ID=Physo155488.2;Parent=Physo155488;constitutive=1;rank=2 scaffold_5 . CDS 143530 143925 . - 0 ID=Physo155488;Parent=Physo155488;rank=1 scaffold_5 . exon 143530 143925 . - . ID=Physo155488.1;Parent=Physo155488;constitutive=1;rank=1 scaffold_5 . repeat_region 153682 153734 . ? . description=trf scaffold_5 . repeat_region 153682 153754 . ? . description=trf scaffold_5 . biological_region 153775 153781 0.999 - . logic_name=eponine scaffold_5 . biological_region 155252 155252 0.999 - . logic_name=eponine scaffold_5 . repeat_region 156851 156873 . ? . description=trf scaffold_5 ensembl protein_coding_gene 150826 151772 . + . ID=Physo128556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50053;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 150826 151772 . + . ID=Physo128556;Parent=Physo128556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 150826 151330 . + 0 ID=Physo128556;Parent=Physo128556;rank=1 scaffold_5 . exon 150826 151330 . + . ID=Physo128556.1;Parent=Physo128556;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 151432 151772 . + 0 ID=Physo128556;Parent=Physo128556;rank=2 scaffold_5 . exon 151432 151772 . + . ID=Physo128556.2;Parent=Physo128556;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 158955 160412 . + . ID=Physo128557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50054;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 158955 160412 . + . ID=Physo128557;Parent=Physo128557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 158955 160412 . + 0 ID=Physo128557;Parent=Physo128557;rank=1 scaffold_5 . exon 158955 160412 . + . ID=Physo128557.1;Parent=Physo128557;constitutive=1;rank=1 scaffold_5 . repeat_region 160637 160645 . ? . description=dust scaffold_5 . repeat_region 164058 164070 . ? . description=dust scaffold_5 ensembl protein_coding_gene 160967 162634 . + . ID=Physo128558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50055;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 160967 162634 . + . ID=Physo128558;Parent=Physo128558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 160967 162634 . + . ID=Physo128558.1;Parent=Physo128558;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 161051 162562 . + 0 ID=Physo128558;Parent=Physo128558;rank=1 scaffold_5 . repeat_region 170912 170958 . ? . description=trf scaffold_5 . biological_region 170921 170926 0.999 + . logic_name=eponine scaffold_5 . biological_region 171773 171775 0.999 - . logic_name=eponine scaffold_5 . biological_region 174765 174769 0.999 - . logic_name=eponine scaffold_5 . repeat_region 175546 175577 . ? . description=trf scaffold_5 . biological_region 176449 176454 0.999 + . logic_name=eponine scaffold_5 . biological_region 176520 176523 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 177163 178666 . + . ID=Physo128559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50056;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 177163 178666 . + . ID=Physo128559;Parent=Physo128559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 177163 178666 . + . ID=Physo128559.1;Parent=Physo128559;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 177164 178666 . + 0 ID=Physo128559;Parent=Physo128559;rank=1 scaffold_5 ensembl protein_coding_gene 178971 180594 . - . ID=Physo128560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50057;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 178971 180594 . - . ID=Physo128560;Parent=Physo128560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 178971 180594 . - . ID=Physo128560.1;Parent=Physo128560;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 178999 180510 . - 0 ID=Physo128560;Parent=Physo128560;rank=1 scaffold_5 . repeat_region 180934 180943 . ? . description=dust scaffold_5 . repeat_region 186842 186850 . ? . description=dust scaffold_5 ensembl protein_coding_gene 182180 189113 . - . ID=Physo128561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50058;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 182180 189113 . - . ID=Physo128561;Parent=Physo128561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 182180 186827 . - 0 ID=Physo128561;Parent=Physo128561;rank=3 scaffold_5 . exon 182180 186827 . - . ID=Physo128561.3;Parent=Physo128561;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 186965 188124 . - 0 ID=Physo128561;Parent=Physo128561;rank=2 scaffold_5 . exon 186965 188124 . - . ID=Physo128561.2;Parent=Physo128561;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 188193 189113 . - 0 ID=Physo128561;Parent=Physo128561;rank=1 scaffold_5 . exon 188193 189113 . - . ID=Physo128561.1;Parent=Physo128561;constitutive=1;rank=1 scaffold_5 . biological_region 189614 189617 0.999 + . logic_name=eponine scaffold_5 . biological_region 189769 189775 0.999 - . logic_name=eponine scaffold_5 . biological_region 190028 190031 0.999 - . logic_name=eponine scaffold_5 . biological_region 191253 191254 0.999 - . logic_name=eponine scaffold_5 . biological_region 194620 194626 0.999 - . logic_name=eponine scaffold_5 . biological_region 194642 194645 0.999 - . logic_name=eponine scaffold_5 . biological_region 195697 195699 0.999 + . logic_name=eponine scaffold_5 . biological_region 198210 198213 0.999 - . logic_name=eponine scaffold_5 . biological_region 198245 198248 0.999 + . logic_name=eponine scaffold_5 . biological_region 198340 198347 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 189535 197233 . + . ID=Physo128562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50059;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 189535 197233 . + . ID=Physo128562;Parent=Physo128562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 189535 190551 . + 0 ID=Physo128562;Parent=Physo128562;rank=1 scaffold_5 . exon 189535 190551 . + . ID=Physo128562.1;Parent=Physo128562;constitutive=1;rank=1 scaffold_5 . CDS 190627 197086 . + 0 ID=Physo128562;Parent=Physo128562;rank=2 scaffold_5 . exon 190627 197086 . + . ID=Physo128562.2;Parent=Physo128562;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 197169 197233 . + 0 ID=Physo128562;Parent=Physo128562;rank=3 scaffold_5 . exon 197169 197233 . + . ID=Physo128562.3;Parent=Physo128562;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 ensembl protein_coding_gene 197364 198715 . - . ID=Physo128563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50060;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 197364 198715 . - . ID=Physo128563;Parent=Physo128563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 197364 198575 . - 0 ID=Physo128563;Parent=Physo128563;rank=2 scaffold_5 . exon 197364 198575 . - . ID=Physo128563.2;Parent=Physo128563;constitutive=1;rank=2 scaffold_5 . CDS 198659 198715 . - 0 ID=Physo128563;Parent=Physo128563;rank=1 scaffold_5 . exon 198659 198715 . - . ID=Physo128563.1;Parent=Physo128563;constitutive=1;rank=1 scaffold_5 . repeat_region 199006 199033 . ? . description=trf scaffold_5 . repeat_region 201959 201999 . ? . description=trf scaffold_5 ensembl protein_coding_gene 199008 200202 . + . ID=Physo128564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50061;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 199008 200202 . + . ID=Physo128564;Parent=Physo128564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 199008 199112 . + 0 ID=Physo128564;Parent=Physo128564;rank=1 scaffold_5 . exon 199008 199112 . + . ID=Physo128564.1;Parent=Physo128564;constitutive=1;rank=1 scaffold_5 . CDS 199195 199397 . + 0 ID=Physo128564;Parent=Physo128564;rank=2 scaffold_5 . exon 199195 199397 . + . ID=Physo128564.2;Parent=Physo128564;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 199472 199550 . + 0 ID=Physo128564;Parent=Physo128564;rank=3 scaffold_5 . exon 199472 199550 . + . ID=Physo128564.3;Parent=Physo128564;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 199622 199848 . + 0 ID=Physo128564;Parent=Physo128564;rank=4 scaffold_5 . exon 199622 199848 . + . ID=Physo128564.4;Parent=Physo128564;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . CDS 199923 200202 . + 0 ID=Physo128564;Parent=Physo128564;rank=5 scaffold_5 . exon 199923 200202 . + . ID=Physo128564.5;Parent=Physo128564;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 ensembl protein_coding_gene 200461 202161 . - . ID=Physo128565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50062;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 200461 202161 . - . ID=Physo128565;Parent=Physo128565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 200461 201708 . - 0 ID=Physo128565;Parent=Physo128565;rank=2 scaffold_5 . exon 200461 201708 . - . ID=Physo128565.2;Parent=Physo128565;constitutive=1;rank=2 scaffold_5 . CDS 201787 202161 . - 0 ID=Physo128565;Parent=Physo128565;rank=1 scaffold_5 . exon 201787 202161 . - . ID=Physo128565.1;Parent=Physo128565;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 202592 210132 . - . ID=Physo128566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50063;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 202592 210132 . - . ID=Physo128566;Parent=Physo128566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 202592 207036 . - 0 ID=Physo128566;Parent=Physo128566;rank=4 scaffold_5 . exon 202592 207036 . - . ID=Physo128566.4;Parent=Physo128566;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 207253 208030 . - 0 ID=Physo128566;Parent=Physo128566;rank=3 scaffold_5 . exon 207253 208030 . - . ID=Physo128566.3;Parent=Physo128566;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 208473 209078 . - 0 ID=Physo128566;Parent=Physo128566;rank=2 scaffold_5 . exon 208473 209078 . - . ID=Physo128566.2;Parent=Physo128566;constitutive=1;rank=2 scaffold_5 . CDS 209116 210132 . - 0 ID=Physo128566;Parent=Physo128566;rank=1 scaffold_5 . biological_region 210270 210278 0.999 + . logic_name=eponine scaffold_5 . biological_region 210442 210447 0.999 - . logic_name=eponine scaffold_5 . biological_region 210496 210502 0.999 + . logic_name=eponine scaffold_5 . exon 209116 210132 . - . ID=Physo128566.1;Parent=Physo128566;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 210830 212110 . + . ID=Physo128567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50064;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 210830 212110 . + . ID=Physo128567;Parent=Physo128567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 210830 211892 . + 0 ID=Physo128567;Parent=Physo128567;rank=1 scaffold_5 . exon 210830 211892 . + . ID=Physo128567.1;Parent=Physo128567;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 212088 212110 . + 0 ID=Physo128567;Parent=Physo128567;rank=2 scaffold_5 . exon 212088 212110 . + . ID=Physo128567.2;Parent=Physo128567;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 212663 218512 . - . ID=Physo128568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50065;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 212663 218512 . - . ID=Physo128568;Parent=Physo128568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 212663 218512 . - 0 ID=Physo128568;Parent=Physo128568;rank=1 scaffold_5 . exon 212663 218512 . - . ID=Physo128568.1;Parent=Physo128568;constitutive=1;rank=1 scaffold_5 . repeat_region 219888 220079 . ? . description=trf scaffold_5 . repeat_region 223305 223317 . ? . description=dust scaffold_5 . repeat_region 225666 225674 . ? . description=dust scaffold_5 . repeat_region 228749 228756 . ? . description=dust scaffold_5 ensembl protein_coding_gene 219236 220518 . + . ID=Physo128569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50066;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 219236 220518 . + . ID=Physo128569;Parent=Physo128569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 219236 219259 . + 0 ID=Physo128569;Parent=Physo128569;rank=1 scaffold_5 . exon 219236 219259 . + . ID=Physo128569.1;Parent=Physo128569;constitutive=1;rank=1 scaffold_5 . CDS 219788 220090 . + 0 ID=Physo128569;Parent=Physo128569;rank=2 scaffold_5 . exon 219788 220090 . + . ID=Physo128569.2;Parent=Physo128569;constitutive=1;rank=2 scaffold_5 . CDS 220120 220518 . + 0 ID=Physo128569;Parent=Physo128569;rank=3 scaffold_5 . exon 220120 220518 . + . ID=Physo128569.3;Parent=Physo128569;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 221450 225285 . + . ID=Physo128570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50067;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 221450 225285 . + . ID=Physo128570;Parent=Physo128570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 221450 221495 . + 0 ID=Physo128570;Parent=Physo128570;rank=1 scaffold_5 . exon 221450 221495 . + . ID=Physo128570.1;Parent=Physo128570;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 221639 222407 . + 0 ID=Physo128570;Parent=Physo128570;rank=2 scaffold_5 . exon 221639 222407 . + . ID=Physo128570.2;Parent=Physo128570;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 222636 223243 . + 0 ID=Physo128570;Parent=Physo128570;rank=3 scaffold_5 . exon 222636 223243 . + . ID=Physo128570.3;Parent=Physo128570;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 223346 225285 . + 0 ID=Physo128570;Parent=Physo128570;rank=4 scaffold_5 . exon 223346 225285 . + . ID=Physo128570.4;Parent=Physo128570;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . biological_region 232982 232987 0.999 - . logic_name=eponine scaffold_5 . biological_region 233813 233815 0.999 + . logic_name=eponine scaffold_5 . biological_region 237307 237310 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 232321 234099 . + . ID=Physo128571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50068;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 232321 234099 . + . ID=Physo128571;Parent=Physo128571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 232321 232670 . + 0 ID=Physo128571;Parent=Physo128571;rank=1 scaffold_5 . exon 232321 232670 . + . ID=Physo128571.1;Parent=Physo128571;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 232755 233249 . + 0 ID=Physo128571;Parent=Physo128571;rank=2 scaffold_5 . exon 232755 233249 . + . ID=Physo128571.2;Parent=Physo128571;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 233380 233624 . + 0 ID=Physo128571;Parent=Physo128571;rank=3 scaffold_5 . exon 233380 233624 . + . ID=Physo128571.3;Parent=Physo128571;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 233696 233742 . + 0 ID=Physo128571;Parent=Physo128571;rank=4 scaffold_5 . exon 233696 233742 . + . ID=Physo128571.4;Parent=Physo128571;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 233803 234099 . + 0 ID=Physo128571;Parent=Physo128571;rank=5 scaffold_5 . exon 233803 234099 . + . ID=Physo128571.5;Parent=Physo128571;constitutive=1;rank=5 scaffold_5 ensembl protein_coding_gene 234838 240693 . - . ID=Physo128572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50069;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 234838 240693 . - . ID=Physo128572;Parent=Physo128572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 234838 240693 . - 0 ID=Physo128572;Parent=Physo128572;rank=1 scaffold_5 . exon 234838 240693 . - . ID=Physo128572.1;Parent=Physo128572;constitutive=1;rank=1 scaffold_5 . repeat_region 243670 243691 . ? . description=trf scaffold_5 . repeat_region 244605 244639 . ? . description=trf scaffold_5 . repeat_region 245401 245521 . ? . description=dust scaffold_5 . repeat_region 245532 245572 . ? . description=trf scaffold_5 . repeat_region 245630 245638 . ? . description=dust scaffold_5 ensembl protein_coding_gene 247944 248978 . - . ID=Physo128573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50070;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 247944 248978 . - . ID=Physo128573;Parent=Physo128573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 247944 248648 . - 0 ID=Physo128573;Parent=Physo128573;rank=2 scaffold_5 . exon 247944 248648 . - . ID=Physo128573.2;Parent=Physo128573;constitutive=1;rank=2 scaffold_5 . CDS 248835 248978 . - 0 ID=Physo128573;Parent=Physo128573;rank=1 scaffold_5 . biological_region 249067 249070 0.999 - . logic_name=eponine scaffold_5 . biological_region 251831 251834 0.999 - . logic_name=eponine scaffold_5 . biological_region 254707 254713 0.999 - . logic_name=eponine scaffold_5 . biological_region 254728 254731 0.999 - . logic_name=eponine scaffold_5 . biological_region 254896 254898 0.999 - . logic_name=eponine scaffold_5 . biological_region 255259 255261 0.999 + . logic_name=eponine scaffold_5 . repeat_region 255877 256155 . - . description=GypsyPi-1c_I-int scaffold_5 . repeat_region 256423 258803 . - . description=GypsyPi-1c_I-int scaffold_5 . biological_region 257016 257019 0.999 - . logic_name=eponine scaffold_5 ensembl tRNA_gene 251864 251933 . + . ID=EPrPSOG00000000222;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_5 ensembl transcript 251864 251933 . + . ID=EPrPSOT00000000222;Parent=EPrPSOG00000000222;biotype=tRNA;logic_name=ncrna_eg scaffold_5 . exon 251864 251933 . + . ID=EPrPSOE00000000222;Parent=EPrPSOT00000000222;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . exon 248835 248978 . - . ID=Physo128573.1;Parent=Physo128573;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 254325 255860 . + . ID=Physo128574;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50071;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 254325 255860 . + . ID=Physo128574;Parent=Physo128574;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 254325 255860 . + 0 ID=Physo128574;Parent=Physo128574;rank=1 scaffold_5 . exon 254325 255860 . + . ID=Physo128574.1;Parent=Physo128574;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 256094 261234 . - . ID=Physo128575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50072;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 256094 261234 . - . ID=Physo128575;Parent=Physo128575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 256094 257662 . - 0 ID=Physo128575;Parent=Physo128575;rank=5 scaffold_5 . exon 256094 257662 . - . ID=Physo128575.5;Parent=Physo128575;constitutive=1;rank=5 scaffold_5 . CDS 257795 259159 . - 0 ID=Physo128575;Parent=Physo128575;rank=4 scaffold_5 . exon 257795 259159 . - . ID=Physo128575.4;Parent=Physo128575;constitutive=1;rank=4 scaffold_5 . CDS 259273 260150 . - 0 ID=Physo128575;Parent=Physo128575;rank=3 scaffold_5 . CDS 260735 260852 . - 0 ID=Physo128575;Parent=Physo128575;rank=2 scaffold_5 . CDS 261154 261234 . - 0 ID=Physo128575;Parent=Physo128575;rank=1 scaffold_5 . repeat_region 259474 259511 . ? . description=trf scaffold_5 . exon 259273 260150 . - . ID=Physo128575.3;Parent=Physo128575;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . exon 260735 260852 . - . ID=Physo128575.2;Parent=Physo128575;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . exon 261154 261234 . - . ID=Physo128575.1;Parent=Physo128575;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 263577 269413 . + . ID=Physo128576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50073;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 263577 269413 . + . ID=Physo128576;Parent=Physo128576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 263577 264373 . + 0 ID=Physo128576;Parent=Physo128576;rank=1 scaffold_5 . exon 263577 264373 . + . ID=Physo128576.1;Parent=Physo128576;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 264429 267033 . + 0 ID=Physo128576;Parent=Physo128576;rank=2 scaffold_5 . exon 264429 267033 . + . ID=Physo128576.2;Parent=Physo128576;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 267161 269413 . + 0 ID=Physo128576;Parent=Physo128576;rank=3 scaffold_5 . exon 267161 269413 . + . ID=Physo128576.3;Parent=Physo128576;constitutive=1;rank=3 scaffold_5 . biological_region 271309 271316 0.999 + . logic_name=eponine scaffold_5 . biological_region 271508 271514 0.999 + . logic_name=eponine scaffold_5 . biological_region 271652 271659 0.999 - . logic_name=eponine scaffold_5 . biological_region 271893 271897 0.999 + . logic_name=eponine scaffold_5 . biological_region 271996 271999 0.999 - . logic_name=eponine scaffold_5 . biological_region 272083 272086 0.999 - . logic_name=eponine scaffold_5 . repeat_region 273396 273403 . ? . description=dust scaffold_5 . biological_region 276798 276801 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 271512 274343 . + . ID=Physo128577;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50074;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 271512 274343 . + . ID=Physo128577;Parent=Physo128577;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 271512 271732 . + 0 ID=Physo128577;Parent=Physo128577;rank=1 scaffold_5 . exon 271512 271732 . + . ID=Physo128577.1;Parent=Physo128577;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 271837 272114 . + 0 ID=Physo128577;Parent=Physo128577;rank=2 scaffold_5 . exon 271837 272114 . + . ID=Physo128577.2;Parent=Physo128577;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 272190 272263 . + 0 ID=Physo128577;Parent=Physo128577;rank=3 scaffold_5 . exon 272190 272263 . + . ID=Physo128577.3;Parent=Physo128577;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 272345 272809 . + 0 ID=Physo128577;Parent=Physo128577;rank=4 scaffold_5 . exon 272345 272809 . + . ID=Physo128577.4;Parent=Physo128577;constitutive=1;rank=4 scaffold_5 . CDS 272887 272979 . + 0 ID=Physo128577;Parent=Physo128577;rank=5 scaffold_5 . exon 272887 272979 . + . ID=Physo128577.5;Parent=Physo128577;constitutive=1;rank=5 scaffold_5 . CDS 273054 273149 . + 0 ID=Physo128577;Parent=Physo128577;rank=6 scaffold_5 . exon 273054 273149 . + . ID=Physo128577.6;Parent=Physo128577;constitutive=1;rank=6 scaffold_5 . CDS 273230 273336 . + 0 ID=Physo128577;Parent=Physo128577;rank=7 scaffold_5 . exon 273230 273336 . + . ID=Physo128577.7;Parent=Physo128577;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_5 . CDS 273422 273490 . + 0 ID=Physo128577;Parent=Physo128577;rank=8 scaffold_5 . exon 273422 273490 . + . ID=Physo128577.8;Parent=Physo128577;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_5 . CDS 273556 273616 . + 0 ID=Physo128577;Parent=Physo128577;rank=9 scaffold_5 . exon 273556 273616 . + . ID=Physo128577.9;Parent=Physo128577;constitutive=1;ensembl_phase=2;rank=9 scaffold_5 . CDS 273693 273758 . + 0 ID=Physo128577;Parent=Physo128577;rank=10 scaffold_5 . exon 273693 273758 . + . ID=Physo128577.10;Parent=Physo128577;constitutive=1;rank=10 scaffold_5 . CDS 273820 274080 . + 0 ID=Physo128577;Parent=Physo128577;rank=11 scaffold_5 . exon 273820 274118 . + . ID=Physo128577.11;Parent=Physo128577;constitutive=1;ensembl_end_phase=-1;rank=11 scaffold_5 . exon 274185 274229 . + . ID=Physo128577.12;Parent=Physo128577;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=12 scaffold_5 . exon 274313 274343 . + . ID=Physo128577.13;Parent=Physo128577;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=13 scaffold_5 . repeat_region 278970 279017 . ? . description=trf scaffold_5 ensembl protein_coding_gene 280440 282120 . + . ID=Physo128579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50076;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 280440 282120 . + . ID=Physo128579;Parent=Physo128579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 280440 280535 . + 0 ID=Physo128579;Parent=Physo128579;rank=1 scaffold_5 . exon 280440 280535 . + . ID=Physo128579.1;Parent=Physo128579;constitutive=1;rank=1 scaffold_5 . CDS 280603 281619 . + 0 ID=Physo128579;Parent=Physo128579;rank=2 scaffold_5 . exon 280603 281619 . + . ID=Physo128579.2;Parent=Physo128579;constitutive=1;rank=2 scaffold_5 . CDS 281707 282120 . + 0 ID=Physo128579;Parent=Physo128579;rank=3 scaffold_5 . exon 281707 282120 . + . ID=Physo128579.3;Parent=Physo128579;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 283825 285674 . - . ID=Physo128580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50077;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 283825 285674 . - . ID=Physo128580;Parent=Physo128580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 283825 284238 . - 0 ID=Physo128580;Parent=Physo128580;rank=4 scaffold_5 . exon 283825 284238 . - . ID=Physo128580.4;Parent=Physo128580;constitutive=1;rank=4 scaffold_5 . CDS 284326 285024 . - 0 ID=Physo128580;Parent=Physo128580;rank=3 scaffold_5 . exon 284326 285024 . - . ID=Physo128580.3;Parent=Physo128580;constitutive=1;rank=3 scaffold_5 . CDS 285228 285560 . - 0 ID=Physo128580;Parent=Physo128580;rank=2 scaffold_5 . exon 285228 285560 . - . ID=Physo128580.2;Parent=Physo128580;constitutive=1;rank=2 scaffold_5 . CDS 285636 285674 . - 0 ID=Physo128580;Parent=Physo128580;rank=1 scaffold_5 . exon 285636 285674 . - . ID=Physo128580.1;Parent=Physo128580;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 286935 288247 . + . ID=Physo155492;biotype=protein_coding;external_name=C_scaffold_5000016;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 286935 288247 . + . ID=Physo155492;Parent=Physo155492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 286935 287109 . + 0 ID=Physo155492;Parent=Physo155492;rank=1 scaffold_5 . exon 286935 287109 . + . ID=Physo155492.1;Parent=Physo155492;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 287201 287265 . + 0 ID=Physo155492;Parent=Physo155492;rank=2 scaffold_5 . exon 287201 287265 . + . ID=Physo155492.2;Parent=Physo155492;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 287362 287613 . + 0 ID=Physo155492;Parent=Physo155492;rank=3 scaffold_5 . exon 287362 287613 . + . ID=Physo155492.3;Parent=Physo155492;constitutive=1;rank=3 scaffold_5 . CDS 287697 287816 . + 0 ID=Physo155492;Parent=Physo155492;rank=4 scaffold_5 . exon 287697 287816 . + . ID=Physo155492.4;Parent=Physo155492;constitutive=1;rank=4 scaffold_5 . CDS 287886 288141 . + 0 ID=Physo155492;Parent=Physo155492;rank=5 scaffold_5 . exon 287886 288141 . + . ID=Physo155492.5;Parent=Physo155492;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_5 . CDS 288222 288247 . + 0 ID=Physo155492;Parent=Physo155492;rank=6 scaffold_5 . exon 288222 288247 . + . ID=Physo155492.6;Parent=Physo155492;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 ensembl protein_coding_gene 288395 289880 . - . ID=Physo155493;biotype=protein_coding;external_name=C_scaffold_5000017;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 288395 289880 . - . ID=Physo155493;Parent=Physo155493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 288395 289317 . - 0 ID=Physo155493;Parent=Physo155493;rank=4 scaffold_5 . exon 288395 289317 . - . ID=Physo155493.4;Parent=Physo155493;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 289342 289467 . - 0 ID=Physo155493;Parent=Physo155493;rank=3 scaffold_5 . CDS 289547 289675 . - 0 ID=Physo155493;Parent=Physo155493;rank=2 scaffold_5 . CDS 289751 289880 . - 0 ID=Physo155493;Parent=Physo155493;rank=1 scaffold_5 . biological_region 288769 288773 0.999 - . logic_name=eponine scaffold_5 . repeat_region 293604 293624 . ? . description=dust scaffold_5 . repeat_region 293866 293875 . ? . description=dust scaffold_5 . repeat_region 297445 297521 . + . description=(TCG)n scaffold_5 . repeat_region 297454 297473 . ? . description=dust scaffold_5 ensembl protein_coding_gene 293083 293833 . - . ID=Physo128585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50082;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 293083 293833 . - . ID=Physo128585;Parent=Physo128585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 293083 293694 . - 0 ID=Physo128585;Parent=Physo128585;rank=2 scaffold_5 . exon 293083 293694 . - . ID=Physo128585.2;Parent=Physo128585;constitutive=1;rank=2 scaffold_5 . CDS 293729 293833 . - 0 ID=Physo128585;Parent=Physo128585;rank=1 scaffold_5 . exon 293729 293833 . - . ID=Physo128585.1;Parent=Physo128585;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 294596 295357 . + . ID=Physo128586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50083;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 294596 295357 . + . ID=Physo128586;Parent=Physo128586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 294596 294681 . + 0 ID=Physo128586;Parent=Physo128586;rank=1 scaffold_5 . exon 294596 294681 . + . ID=Physo128586.1;Parent=Physo128586;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 294733 295357 . + 0 ID=Physo128586;Parent=Physo128586;rank=2 scaffold_5 . exon 294733 295357 . + . ID=Physo128586.2;Parent=Physo128586;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 295503 300915 . - . ID=Physo128587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50084;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 295503 300915 . - . ID=Physo128587;Parent=Physo128587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 295503 295762 . - . ID=Physo128587.5;Parent=Physo128587;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_5 . CDS 295658 295762 . - 0 ID=Physo128587;Parent=Physo128587;rank=5 scaffold_5 . CDS 295835 296376 . - 0 ID=Physo128587;Parent=Physo128587;rank=4 scaffold_5 . exon 295835 296376 . - . ID=Physo128587.4;Parent=Physo128587;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 296442 296518 . - 0 ID=Physo128587;Parent=Physo128587;rank=3 scaffold_5 . exon 296442 296518 . - . ID=Physo128587.3;Parent=Physo128587;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 296587 300147 . - 0 ID=Physo128587;Parent=Physo128587;rank=2 scaffold_5 . exon 296587 300147 . - . ID=Physo128587.2;Parent=Physo128587;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 300224 300915 . - 0 ID=Physo128587;Parent=Physo128587;rank=1 scaffold_5 . exon 289342 289467 . - . ID=Physo155493.3;Parent=Physo155493;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . exon 289547 289675 . - . ID=Physo155493.2;Parent=Physo155493;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . exon 289751 289880 . - . ID=Physo155493.1;Parent=Physo155493;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 290230 291080 . - . ID=Physo155494;biotype=protein_coding;external_name=C_scaffold_5000018;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 290230 291080 . - . ID=Physo155494;Parent=Physo155494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 290230 290436 . - 0 ID=Physo155494;Parent=Physo155494;rank=3 scaffold_5 . exon 290230 290436 . - . ID=Physo155494.3;Parent=Physo155494;constitutive=1;rank=3 scaffold_5 . CDS 290484 290897 . - 0 ID=Physo155494;Parent=Physo155494;rank=2 scaffold_5 . exon 290484 290897 . - . ID=Physo155494.2;Parent=Physo155494;constitutive=1;rank=2 scaffold_5 . CDS 290943 291080 . - 0 ID=Physo155494;Parent=Physo155494;rank=1 scaffold_5 . exon 290943 291080 . - . ID=Physo155494.1;Parent=Physo155494;constitutive=1;rank=1 scaffold_5 . exon 300224 300915 . - . ID=Physo128587.1;Parent=Physo128587;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 302807 306756 . + . ID=Physo128588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50085;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 302807 306756 . + . ID=Physo128588;Parent=Physo128588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 302807 302956 . + 0 ID=Physo128588;Parent=Physo128588;rank=1 scaffold_5 . exon 302807 302956 . + . ID=Physo128588.1;Parent=Physo128588;constitutive=1;rank=1 scaffold_5 . CDS 303025 303114 . + 0 ID=Physo128588;Parent=Physo128588;rank=2 scaffold_5 . exon 303025 303114 . + . ID=Physo128588.2;Parent=Physo128588;constitutive=1;rank=2 scaffold_5 . CDS 303175 303421 . + 0 ID=Physo128588;Parent=Physo128588;rank=3 scaffold_5 . exon 303175 303421 . + . ID=Physo128588.3;Parent=Physo128588;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 303497 304321 . + 0 ID=Physo128588;Parent=Physo128588;rank=4 scaffold_5 . exon 303497 304321 . + . ID=Physo128588.4;Parent=Physo128588;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 305174 306756 . + 0 ID=Physo128588;Parent=Physo128588;rank=5 scaffold_5 . exon 305174 306756 . + . ID=Physo128588.5;Parent=Physo128588;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 ensembl protein_coding_gene 307168 308067 . + . ID=Physo128589;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50086;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 307168 308067 . + . ID=Physo128589;Parent=Physo128589;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 307168 308067 . + 0 ID=Physo128589;Parent=Physo128589;rank=1 scaffold_5 . exon 307168 308067 . + . ID=Physo128589.1;Parent=Physo128589;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 308299 309669 . + . ID=Physo128590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50087;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 308299 309669 . + . ID=Physo128590;Parent=Physo128590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 308299 309669 . + 0 ID=Physo128590;Parent=Physo128590;rank=1 scaffold_5 . exon 308299 309669 . + . ID=Physo128590.1;Parent=Physo128590;constitutive=1;rank=1 scaffold_5 . biological_region 309292 309297 0.999 + . logic_name=eponine scaffold_5 . repeat_region 309892 309900 . ? . description=dust scaffold_5 . biological_region 309911 309915 0.999 + . logic_name=eponine scaffold_5 . repeat_region 315274 315288 . ? . description=dust scaffold_5 . biological_region 318358 318359 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 310135 310593 . - . ID=Physo128591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50088;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 310135 310593 . - . ID=Physo128591;Parent=Physo128591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 310135 310593 . - 0 ID=Physo128591;Parent=Physo128591;rank=1 scaffold_5 . exon 310135 310593 . - . ID=Physo128591.1;Parent=Physo128591;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 318082 318803 . - . ID=Physo128592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50089;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 318082 318803 . - . ID=Physo128592;Parent=Physo128592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 318082 318206 . - 0 ID=Physo128592;Parent=Physo128592;rank=3 scaffold_5 . exon 318082 318206 . - . ID=Physo128592.3;Parent=Physo128592;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 318314 318345 . - 0 ID=Physo128592;Parent=Physo128592;rank=2 scaffold_5 . exon 318314 318345 . - . ID=Physo128592.2;Parent=Physo128592;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 318484 318803 . - 0 ID=Physo128592;Parent=Physo128592;rank=1 scaffold_5 . repeat_region 319166 319206 . ? . description=trf scaffold_5 . repeat_region 322327 322350 . ? . description=trf scaffold_5 . repeat_region 327713 327748 . ? . description=trf scaffold_5 ensembl protein_coding_gene 319701 321112 . - . ID=Physo108292;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50007;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 319701 321112 . - . ID=Physo108292;Parent=Physo108292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 319701 321112 . - . ID=Physo108292.1;Parent=Physo108292;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . CDS 320006 321112 . - 0 ID=Physo108292;Parent=Physo108292;rank=1 scaffold_5 ensembl protein_coding_gene 327404 329266 . + . ID=Physo108293;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50008;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 327404 329266 . + . ID=Physo108293;Parent=Physo108293;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 327404 327753 . + . ID=Physo108293.1;Parent=Physo108293;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_5 . CDS 327455 327753 . + 0 ID=Physo108293;Parent=Physo108293;rank=1 scaffold_5 . CDS 327796 328519 . + 0 ID=Physo108293;Parent=Physo108293;rank=2 scaffold_5 . exon 327796 329266 . + . ID=Physo108293.2;Parent=Physo108293;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_5 . exon 318484 318803 . - . ID=Physo128592.1;Parent=Physo128592;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 319060 319669 . + . ID=Physo128593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50090;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 319060 319669 . + . ID=Physo128593;Parent=Physo128593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 319060 319669 . + . ID=Physo128593.1;Parent=Physo128593;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 319109 319537 . + 0 ID=Physo128593;Parent=Physo128593;rank=1 scaffold_5 ensembl protein_coding_gene 321322 321893 . + . ID=Physo128595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50092;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 321322 321893 . + . ID=Physo128595;Parent=Physo128595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 321322 321893 . + . ID=Physo128595.1;Parent=Physo128595;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 321337 321720 . + 0 ID=Physo128595;Parent=Physo128595;rank=1 scaffold_5 ensembl protein_coding_gene 322885 325331 . - . ID=Physo128596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50093;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 322885 325331 . - . ID=Physo128596;Parent=Physo128596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 322885 322904 . - 0 ID=Physo128596;Parent=Physo128596;rank=6 scaffold_5 . exon 322885 322904 . - . ID=Physo128596.6;Parent=Physo128596;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 . CDS 323076 323429 . - 0 ID=Physo128596;Parent=Physo128596;rank=5 scaffold_5 . exon 323076 323429 . - . ID=Physo128596.5;Parent=Physo128596;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 323511 323660 . - 0 ID=Physo128596;Parent=Physo128596;rank=4 scaffold_5 . exon 323511 323660 . - . ID=Physo128596.4;Parent=Physo128596;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 323735 324178 . - 0 ID=Physo128596;Parent=Physo128596;rank=3 scaffold_5 . exon 323735 324178 . - . ID=Physo128596.3;Parent=Physo128596;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 324200 324479 . - 0 ID=Physo128596;Parent=Physo128596;rank=2 scaffold_5 . exon 324200 324479 . - . ID=Physo128596.2;Parent=Physo128596;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 324897 325331 . - 0 ID=Physo128596;Parent=Physo128596;rank=1 scaffold_5 . exon 324897 325331 . - . ID=Physo128596.1;Parent=Physo128596;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 325707 327210 . + . ID=Physo128597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50094;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 325707 327210 . + . ID=Physo128597;Parent=Physo128597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 325707 326569 . + 0 ID=Physo128597;Parent=Physo128597;rank=1 scaffold_5 . exon 325707 326569 . + . ID=Physo128597.1;Parent=Physo128597;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 326651 326693 . + 0 ID=Physo128597;Parent=Physo128597;rank=2 scaffold_5 . exon 326651 326693 . + . ID=Physo128597.2;Parent=Physo128597;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 326777 326864 . + 0 ID=Physo128597;Parent=Physo128597;rank=3 scaffold_5 . exon 326777 326864 . + . ID=Physo128597.3;Parent=Physo128597;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 326948 327210 . + 0 ID=Physo128597;Parent=Physo128597;rank=4 scaffold_5 . exon 326948 327210 . + . ID=Physo128597.4;Parent=Physo128597;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . biological_region 329877 329879 0.999 - . logic_name=eponine scaffold_5 . repeat_region 333533 333547 . ? . description=dust scaffold_5 . biological_region 334469 334470 0.999 - . logic_name=eponine scaffold_5 . biological_region 338170 338176 0.999 - . logic_name=eponine scaffold_5 ensembl pseudogene 332433 333212 . - . ID=Physo128600;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_50097;logic_name=jgi_physo1_1 scaffold_5 ensembl pseudogene 332433 333212 . - . ID=Physo128600;Parent=Physo128600;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_5 . exon 332433 333212 . - . ID=Physo128600.1;Parent=Physo128600;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 334279 342180 . + . ID=Physo128601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50098;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 334279 342180 . + . ID=Physo128601;Parent=Physo128601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 334279 342180 . + 0 ID=Physo128601;Parent=Physo128601;rank=1 scaffold_5 . exon 334279 342180 . + . ID=Physo128601.1;Parent=Physo128601;constitutive=1;rank=1 scaffold_5 . repeat_region 339241 339663 . ? . description=trf scaffold_5 . repeat_region 344567 344602 . ? . description=trf scaffold_5 . repeat_region 345761 345813 . ? . description=trf scaffold_5 . repeat_region 345774 345802 . ? . description=trf scaffold_5 . repeat_region 345917 345968 . ? . description=trf scaffold_5 . repeat_region 345921 345976 . ? . description=trf scaffold_5 . repeat_region 346698 346735 . ? . description=trf scaffold_5 ensembl protein_coding_gene 345259 347923 . + . ID=Physo128602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50099;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 345259 347923 . + . ID=Physo128602;Parent=Physo128602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 345259 345265 . + 0 ID=Physo128602;Parent=Physo128602;rank=1 scaffold_5 . exon 345259 345265 . + . ID=Physo128602.1;Parent=Physo128602;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 345315 347923 . + 0 ID=Physo128602;Parent=Physo128602;rank=2 scaffold_5 . exon 345315 347923 . + . ID=Physo128602.2;Parent=Physo128602;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 348202 349113 . - . ID=Physo128603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50100;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 348202 349113 . - . ID=Physo128603;Parent=Physo128603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 348202 349113 . - 0 ID=Physo128603;Parent=Physo128603;rank=1 scaffold_5 . exon 348202 349113 . - . ID=Physo128603.1;Parent=Physo128603;constitutive=1;rank=1 scaffold_5 . biological_region 348812 348814 0.999 + . logic_name=eponine scaffold_5 . biological_region 348820 348822 0.999 - . logic_name=eponine scaffold_5 . biological_region 348828 348831 0.999 + . logic_name=eponine scaffold_5 . biological_region 348845 348848 0.999 - . logic_name=eponine scaffold_5 . repeat_region 349123 349157 . ? . description=dust scaffold_5 . biological_region 350709 350711 0.999 - . logic_name=eponine scaffold_5 . biological_region 354810 354813 0.999 + . logic_name=eponine scaffold_5 . biological_region 354912 354914 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 350057 350829 . - . ID=Physo128604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50101;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 350057 350829 . - . ID=Physo128604;Parent=Physo128604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 350057 350158 . - 0 ID=Physo128604;Parent=Physo128604;rank=5 scaffold_5 . exon 350057 350158 . - . ID=Physo128604.5;Parent=Physo128604;constitutive=1;rank=5 scaffold_5 . CDS 350278 350376 . - 0 ID=Physo128604;Parent=Physo128604;rank=4 scaffold_5 . exon 350278 350376 . - . ID=Physo128604.4;Parent=Physo128604;constitutive=1;rank=4 scaffold_5 . CDS 350453 350566 . - 0 ID=Physo128604;Parent=Physo128604;rank=3 scaffold_5 . exon 350453 350566 . - . ID=Physo128604.3;Parent=Physo128604;constitutive=1;rank=3 scaffold_5 . CDS 350647 350742 . - 0 ID=Physo128604;Parent=Physo128604;rank=2 scaffold_5 . exon 350647 350742 . - . ID=Physo128604.2;Parent=Physo128604;constitutive=1;rank=2 scaffold_5 . CDS 350788 350829 . - 0 ID=Physo128604;Parent=Physo128604;rank=1 scaffold_5 . exon 350788 350829 . - . ID=Physo128604.1;Parent=Physo128604;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 351044 352672 . + . ID=Physo128605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50102;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 351044 352672 . + . ID=Physo128605;Parent=Physo128605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 351044 352360 . + . ID=Physo128605.1;Parent=Physo128605;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 351119 352360 . + 0 ID=Physo128605;Parent=Physo128605;rank=1 scaffold_5 . CDS 352442 352672 . + 0 ID=Physo128605;Parent=Physo128605;rank=2 scaffold_5 . exon 352442 352672 . + . ID=Physo128605.2;Parent=Physo128605;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 353089 355018 . - . ID=Physo128606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50103;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 353089 355018 . - . ID=Physo128606;Parent=Physo128606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 353089 353434 . - 0 ID=Physo128606;Parent=Physo128606;rank=5 scaffold_5 . exon 353089 353434 . - . ID=Physo128606.5;Parent=Physo128606;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 353509 353585 . - 0 ID=Physo128606;Parent=Physo128606;rank=4 scaffold_5 . exon 353509 353585 . - . ID=Physo128606.4;Parent=Physo128606;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . CDS 353654 354559 . - 0 ID=Physo128606;Parent=Physo128606;rank=3 scaffold_5 . exon 353654 354559 . - . ID=Physo128606.3;Parent=Physo128606;constitutive=1;rank=3 scaffold_5 . CDS 354658 354748 . - 0 ID=Physo128606;Parent=Physo128606;rank=2 scaffold_5 . exon 354658 354748 . - . ID=Physo128606.2;Parent=Physo128606;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 354825 355018 . - 0 ID=Physo128606;Parent=Physo128606;rank=1 scaffold_5 . exon 354825 355018 . - . ID=Physo128606.1;Parent=Physo128606;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 355907 356632 . + . ID=Physo128607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50104;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 355907 356632 . + . ID=Physo128607;Parent=Physo128607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 355907 356632 . + 0 ID=Physo128607;Parent=Physo128607;rank=1 scaffold_5 . exon 355907 356632 . + . ID=Physo128607.1;Parent=Physo128607;constitutive=1;rank=1 scaffold_5 . repeat_region 358853 358936 . ? . description=trf scaffold_5 . repeat_region 359441 359484 . ? . description=trf scaffold_5 . repeat_region 359640 359688 . ? . description=trf scaffold_5 . repeat_region 361853 361877 . ? . description=trf scaffold_5 . repeat_region 367005 367040 . ? . description=trf scaffold_5 . repeat_region 367008 367040 . ? . description=trf scaffold_5 . repeat_region 367217 367236 . ? . description=trf scaffold_5 ensembl protein_coding_gene 365200 365973 . - . ID=Physo128608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50105;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 365200 365973 . - . ID=Physo128608;Parent=Physo128608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 365200 365973 . - 0 ID=Physo128608;Parent=Physo128608;rank=1 scaffold_5 . exon 365200 365973 . - . ID=Physo128608.1;Parent=Physo128608;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 367040 369368 . + . ID=Physo128609;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50106;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 367040 369368 . + . ID=Physo128609;Parent=Physo128609;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 367040 368224 . + 0 ID=Physo128609;Parent=Physo128609;rank=1 scaffold_5 . exon 367040 368224 . + . ID=Physo128609.1;Parent=Physo128609;constitutive=1;rank=1 scaffold_5 . CDS 368260 368928 . + 0 ID=Physo128609;Parent=Physo128609;rank=2 scaffold_5 . CDS 368979 369368 . + 0 ID=Physo128609;Parent=Physo128609;rank=3 scaffold_5 . biological_region 368732 368736 0.999 + . logic_name=eponine scaffold_5 . biological_region 368789 368791 0.999 - . logic_name=eponine scaffold_5 . biological_region 368846 368855 0.999 - . logic_name=eponine scaffold_5 . repeat_region 368948 368955 . ? . description=dust scaffold_5 . biological_region 370147 370150 0.999 - . logic_name=eponine scaffold_5 . biological_region 370179 370180 0.999 - . logic_name=eponine scaffold_5 . biological_region 370202 370206 0.999 + . logic_name=eponine scaffold_5 . biological_region 370525 370528 0.999 - . logic_name=eponine scaffold_5 . biological_region 370744 370744 0.999 + . logic_name=eponine scaffold_5 . repeat_region 373814 373863 . ? . description=dust scaffold_5 . biological_region 374080 374085 0.999 + . logic_name=eponine scaffold_5 . biological_region 375235 375236 0.999 - . logic_name=eponine scaffold_5 . repeat_region 376796 377312 . ? . description=dust scaffold_5 ensembl protein_coding_gene 374002 374784 . + . ID=Physo108294;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50009;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 374002 374784 . + . ID=Physo108294;Parent=Physo108294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 374002 374784 . + 0 ID=Physo108294;Parent=Physo108294;rank=1 scaffold_5 . exon 374002 374784 . + . ID=Physo108294.1;Parent=Physo108294;constitutive=1;rank=1 scaffold_5 . exon 368260 368928 . + . ID=Physo128609.2;Parent=Physo128609;constitutive=1;rank=2 scaffold_5 . exon 368979 369368 . + . ID=Physo128609.3;Parent=Physo128609;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 370396 371980 . - . ID=Physo128610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50107;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 370396 371980 . - . ID=Physo128610;Parent=Physo128610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 370396 371178 . - 0 ID=Physo128610;Parent=Physo128610;rank=2 scaffold_5 . exon 370396 371178 . - . ID=Physo128610.2;Parent=Physo128610;constitutive=1;rank=2 scaffold_5 . CDS 371396 371980 . - 0 ID=Physo128610;Parent=Physo128610;rank=1 scaffold_5 . exon 371396 371980 . - . ID=Physo128610.1;Parent=Physo128610;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 375125 376772 . - . ID=Physo155501;biotype=protein_coding;external_name=C_scaffold_5000025;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 375125 376772 . - . ID=Physo155501;Parent=Physo155501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 375125 375174 . - 0 ID=Physo155501;Parent=Physo155501;rank=6 scaffold_5 . exon 375125 375174 . - . ID=Physo155501.6;Parent=Physo155501;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 . CDS 375196 375593 . - 0 ID=Physo155501;Parent=Physo155501;rank=5 scaffold_5 . exon 375196 375593 . - . ID=Physo155501.5;Parent=Physo155501;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_5 . CDS 375756 375832 . - 0 ID=Physo155501;Parent=Physo155501;rank=4 scaffold_5 . exon 375756 375832 . - . ID=Physo155501.4;Parent=Physo155501;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . CDS 376066 376233 . - 0 ID=Physo155501;Parent=Physo155501;rank=3 scaffold_5 . exon 376066 376233 . - . ID=Physo155501.3;Parent=Physo155501;constitutive=1;rank=3 scaffold_5 . CDS 376357 376557 . - 0 ID=Physo155501;Parent=Physo155501;rank=2 scaffold_5 . exon 376357 376557 . - . ID=Physo155501.2;Parent=Physo155501;constitutive=1;rank=2 scaffold_5 . CDS 376626 376772 . - 0 ID=Physo155501;Parent=Physo155501;rank=1 scaffold_5 . exon 376626 376772 . - . ID=Physo155501.1;Parent=Physo155501;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 382727 396139 . - . ID=Physo155502;biotype=protein_coding;external_name=C_scaffold_5000026;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 382727 396139 . - . ID=Physo155502;Parent=Physo155502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 382727 383036 . - 0 ID=Physo155502;Parent=Physo155502;rank=26 scaffold_5 . exon 382727 383036 . - . ID=Physo155502.26;Parent=Physo155502;constitutive=1;ensembl_phase=2;rank=26 scaffold_5 . CDS 383507 384120 . - 0 ID=Physo155502;Parent=Physo155502;rank=25 scaffold_5 . exon 383507 384120 . - . ID=Physo155502.25;Parent=Physo155502;constitutive=1;ensembl_end_phase=2;rank=25 scaffold_5 . CDS 384268 384693 . - 0 ID=Physo155502;Parent=Physo155502;rank=24 scaffold_5 . exon 384268 384693 . - . ID=Physo155502.24;Parent=Physo155502;constitutive=1;rank=24 scaffold_5 . CDS 384793 384913 . - 0 ID=Physo155502;Parent=Physo155502;rank=23 scaffold_5 . exon 384793 384913 . - . ID=Physo155502.23;Parent=Physo155502;constitutive=1;ensembl_phase=2;rank=23 scaffold_5 . CDS 385211 385639 . - 0 ID=Physo155502;Parent=Physo155502;rank=22 scaffold_5 . exon 385211 385639 . - . ID=Physo155502.22;Parent=Physo155502;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=22 scaffold_5 . CDS 385823 386026 . - 0 ID=Physo155502;Parent=Physo155502;rank=21 scaffold_5 . exon 385823 386026 . - . ID=Physo155502.21;Parent=Physo155502;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=21 scaffold_5 . CDS 386327 386519 . - 0 ID=Physo155502;Parent=Physo155502;rank=20 scaffold_5 . exon 386327 386519 . - . ID=Physo155502.20;Parent=Physo155502;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=20 scaffold_5 . CDS 386550 386745 . - 0 ID=Physo155502;Parent=Physo155502;rank=19 scaffold_5 . exon 386550 386745 . - . ID=Physo155502.19;Parent=Physo155502;constitutive=1;ensembl_end_phase=1;rank=19 scaffold_5 . CDS 386818 386961 . - 0 ID=Physo155502;Parent=Physo155502;rank=18 scaffold_5 . exon 386818 386961 . - . ID=Physo155502.18;Parent=Physo155502;constitutive=1;rank=18 scaffold_5 . CDS 387045 387146 . - 0 ID=Physo155502;Parent=Physo155502;rank=17 scaffold_5 . exon 387045 387146 . - . ID=Physo155502.17;Parent=Physo155502;constitutive=1;rank=17 scaffold_5 . CDS 387279 388590 . - 0 ID=Physo155502;Parent=Physo155502;rank=16 scaffold_5 . exon 387279 388590 . - . ID=Physo155502.16;Parent=Physo155502;constitutive=1;ensembl_phase=2;rank=16 scaffold_5 . CDS 388657 388756 . - 0 ID=Physo155502;Parent=Physo155502;rank=15 scaffold_5 . CDS 388799 388911 . - 0 ID=Physo155502;Parent=Physo155502;rank=14 scaffold_5 . CDS 388985 389048 . - 0 ID=Physo155502;Parent=Physo155502;rank=13 scaffold_5 . CDS 389085 389140 . - 0 ID=Physo155502;Parent=Physo155502;rank=12 scaffold_5 . CDS 389180 389506 . - 0 ID=Physo155502;Parent=Physo155502;rank=11 scaffold_5 . CDS 389771 390348 . - 0 ID=Physo155502;Parent=Physo155502;rank=10 scaffold_5 . CDS 390409 390597 . - 0 ID=Physo155502;Parent=Physo155502;rank=9 scaffold_5 . CDS 390671 390811 . - 0 ID=Physo155502;Parent=Physo155502;rank=8 scaffold_5 . CDS 390833 391272 . - 0 ID=Physo155502;Parent=Physo155502;rank=7 scaffold_5 . CDS 391345 391811 . - 0 ID=Physo155502;Parent=Physo155502;rank=6 scaffold_5 . CDS 391983 392202 . - 0 ID=Physo155502;Parent=Physo155502;rank=5 scaffold_5 . CDS 392314 392500 . - 0 ID=Physo155502;Parent=Physo155502;rank=4 scaffold_5 . CDS 392531 393903 . - 0 ID=Physo155502;Parent=Physo155502;rank=3 scaffold_5 . CDS 393946 394120 . - 0 ID=Physo155502;Parent=Physo155502;rank=2 scaffold_5 . CDS 394265 396139 . - 0 ID=Physo155502;Parent=Physo155502;rank=1 scaffold_5 . biological_region 397150 397151 0.999 - . logic_name=eponine scaffold_5 . exon 388657 388756 . - . ID=Physo155502.15;Parent=Physo155502;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=15 scaffold_5 . exon 388799 388911 . - . ID=Physo155502.14;Parent=Physo155502;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=14 scaffold_5 . exon 388985 389048 . - . ID=Physo155502.13;Parent=Physo155502;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=13 scaffold_5 . exon 389085 389140 . - . ID=Physo155502.12;Parent=Physo155502;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=12 scaffold_5 . exon 389180 389506 . - . ID=Physo155502.11;Parent=Physo155502;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_5 . exon 389771 390348 . - . ID=Physo155502.10;Parent=Physo155502;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_5 . exon 390409 390597 . - . ID=Physo155502.9;Parent=Physo155502;constitutive=1;rank=9 scaffold_5 . exon 390671 390811 . - . ID=Physo155502.8;Parent=Physo155502;constitutive=1;rank=8 scaffold_5 . exon 390833 391272 . - . ID=Physo155502.7;Parent=Physo155502;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 . exon 391345 391811 . - . ID=Physo155502.6;Parent=Physo155502;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_5 . exon 391983 392202 . - . ID=Physo155502.5;Parent=Physo155502;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_5 . exon 392314 392500 . - . ID=Physo155502.4;Parent=Physo155502;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . exon 392531 393903 . - . ID=Physo155502.3;Parent=Physo155502;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . exon 393946 394120 . - . ID=Physo155502.2;Parent=Physo155502;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . exon 394265 396139 . - . ID=Physo155502.1;Parent=Physo155502;constitutive=1;rank=1 scaffold_5 . repeat_region 398674 398717 . ? . description=trf scaffold_5 . repeat_region 401896 401918 . ? . description=dust scaffold_5 . repeat_region 401896 401918 . ? . description=trf scaffold_5 . repeat_region 404470 404484 . ? . description=dust scaffold_5 . repeat_region 406017 406047 . ? . description=trf scaffold_5 ensembl protein_coding_gene 398604 399776 . + . ID=Physo128614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50111;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 398604 399776 . + . ID=Physo128614;Parent=Physo128614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 398604 399776 . + 0 ID=Physo128614;Parent=Physo128614;rank=1 scaffold_5 . exon 398604 399776 . + . ID=Physo128614.1;Parent=Physo128614;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 400104 401283 . + . ID=Physo128615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50112;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 400104 401283 . + . ID=Physo128615;Parent=Physo128615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 400104 400189 . + 0 ID=Physo128615;Parent=Physo128615;rank=1 scaffold_5 . exon 400104 400189 . + . ID=Physo128615.1;Parent=Physo128615;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 400254 401283 . + 0 ID=Physo128615;Parent=Physo128615;rank=2 scaffold_5 . exon 400254 401283 . + . ID=Physo128615.2;Parent=Physo128615;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 401479 403014 . - . ID=Physo128616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50113;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 401479 403014 . - . ID=Physo128616;Parent=Physo128616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 401479 403014 . - 0 ID=Physo128616;Parent=Physo128616;rank=1 scaffold_5 . exon 401479 403014 . - . ID=Physo128616.1;Parent=Physo128616;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 404963 406080 . + . ID=Physo128617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50114;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 404963 406080 . + . ID=Physo128617;Parent=Physo128617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 404963 405130 . + . ID=Physo128617.1;Parent=Physo128617;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 404989 405130 . + 0 ID=Physo128617;Parent=Physo128617;rank=1 scaffold_5 . CDS 405206 406080 . + 0 ID=Physo128617;Parent=Physo128617;rank=2 scaffold_5 . exon 405206 406080 . + . ID=Physo128617.2;Parent=Physo128617;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 406577 407473 . + . ID=Physo128618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50115;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 406577 407473 . + . ID=Physo128618;Parent=Physo128618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 406577 407473 . + 0 ID=Physo128618;Parent=Physo128618;rank=1 scaffold_5 . exon 406577 407473 . + . ID=Physo128618.1;Parent=Physo128618;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 407572 409323 . - . ID=Physo128619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50116;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 407572 409323 . - . ID=Physo128619;Parent=Physo128619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 407572 409323 . - 0 ID=Physo128619;Parent=Physo128619;rank=1 scaffold_5 . exon 407572 409323 . - . ID=Physo128619.1;Parent=Physo128619;constitutive=1;rank=1 scaffold_5 . biological_region 411316 411318 0.999 + . logic_name=eponine scaffold_5 . biological_region 411336 411342 0.999 + . logic_name=eponine scaffold_5 . biological_region 411442 411445 0.999 - . logic_name=eponine scaffold_5 . biological_region 412598 412600 0.999 + . logic_name=eponine scaffold_5 . biological_region 413022 413025 0.999 + . logic_name=eponine scaffold_5 . biological_region 414017 414020 0.999 + . logic_name=eponine scaffold_5 . biological_region 415007 415009 0.999 + . logic_name=eponine scaffold_5 . biological_region 415226 415226 0.999 + . logic_name=eponine scaffold_5 . biological_region 415354 415357 0.999 + . logic_name=eponine scaffold_5 . biological_region 415469 415471 0.999 - . logic_name=eponine scaffold_5 . biological_region 417037 417042 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 410361 411803 . + . ID=Physo128620;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50117;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 410361 411803 . + . ID=Physo128620;Parent=Physo128620;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 410361 410511 . + 0 ID=Physo128620;Parent=Physo128620;rank=1 scaffold_5 . exon 410361 410511 . + . ID=Physo128620.1;Parent=Physo128620;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 410580 410692 . + 0 ID=Physo128620;Parent=Physo128620;rank=2 scaffold_5 . exon 410580 410692 . + . ID=Physo128620.2;Parent=Physo128620;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 410766 411473 . + 0 ID=Physo128620;Parent=Physo128620;rank=3 scaffold_5 . exon 410766 411803 . + . ID=Physo128620.3;Parent=Physo128620;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_5 ensembl protein_coding_gene 412556 414121 . + . ID=Physo128621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50118;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 412556 414121 . + . ID=Physo128621;Parent=Physo128621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 412556 412694 . + 0 ID=Physo128621;Parent=Physo128621;rank=1 scaffold_5 . exon 412556 412694 . + . ID=Physo128621.1;Parent=Physo128621;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 412762 412865 . + 0 ID=Physo128621;Parent=Physo128621;rank=2 scaffold_5 . exon 412762 412865 . + . ID=Physo128621.2;Parent=Physo128621;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 412949 413872 . + 0 ID=Physo128621;Parent=Physo128621;rank=3 scaffold_5 . exon 412949 414121 . + . ID=Physo128621.3;Parent=Physo128621;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_5 ensembl protein_coding_gene 414609 415836 . + . ID=Physo128622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50119;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 414609 415836 . + . ID=Physo128622;Parent=Physo128622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 414609 414747 . + 0 ID=Physo128622;Parent=Physo128622;rank=1 scaffold_5 . exon 414609 414747 . + . ID=Physo128622.1;Parent=Physo128622;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 414830 415836 . + 0 ID=Physo128622;Parent=Physo128622;rank=2 scaffold_5 . exon 414830 415836 . + . ID=Physo128622.2;Parent=Physo128622;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 416418 417985 . - . ID=Physo128623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50120;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 416418 417985 . - . ID=Physo128623;Parent=Physo128623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 416418 416574 . - 0 ID=Physo128623;Parent=Physo128623;rank=3 scaffold_5 . exon 416418 416574 . - . ID=Physo128623.3;Parent=Physo128623;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 416660 417469 . - 0 ID=Physo128623;Parent=Physo128623;rank=2 scaffold_5 . exon 416660 417469 . - . ID=Physo128623.2;Parent=Physo128623;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 417585 417985 . - 0 ID=Physo128623;Parent=Physo128623;rank=1 scaffold_5 . exon 417585 417985 . - . ID=Physo128623.1;Parent=Physo128623;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . repeat_region 425599 425613 . ? . description=dust scaffold_5 . repeat_region 425669 425698 . ? . description=trf scaffold_5 ensembl protein_coding_gene 418852 419253 . + . ID=Physo128624;biotype=protein_coding;description=Elicitin-like protein SOL12 [Source:UniProtKB/TrEMBL%3BAcc:Q2N072];external_name=estExt_fgenesh1_pg.C_50121;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 418852 419253 . + . ID=Physo128624;Parent=Physo128624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 418852 419253 . + 0 ID=Physo128624;Parent=Physo128624;rank=1 scaffold_5 . exon 418852 419253 . + . ID=Physo128624.1;Parent=Physo128624;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 419417 420636 . + . ID=Physo128625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50122;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 419417 420636 . + . ID=Physo128625;Parent=Physo128625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 419417 419521 . + 0 ID=Physo128625;Parent=Physo128625;rank=1 scaffold_5 . exon 419417 419521 . + . ID=Physo128625.1;Parent=Physo128625;constitutive=1;rank=1 scaffold_5 . CDS 419581 420636 . + 0 ID=Physo128625;Parent=Physo128625;rank=2 scaffold_5 . exon 419581 420636 . + . ID=Physo128625.2;Parent=Physo128625;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 420755 422010 . - . ID=Physo128626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50123;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 420755 422010 . - . ID=Physo128626;Parent=Physo128626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 420755 421825 . - 0 ID=Physo128626;Parent=Physo128626;rank=2 scaffold_5 . exon 420755 421825 . - . ID=Physo128626.2;Parent=Physo128626;constitutive=1;rank=2 scaffold_5 . CDS 421903 422010 . - 0 ID=Physo128626;Parent=Physo128626;rank=1 scaffold_5 . exon 421903 422010 . - . ID=Physo128626.1;Parent=Physo128626;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 424472 425371 . + . ID=Physo128627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50124;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 424472 425371 . + . ID=Physo128627;Parent=Physo128627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 424472 425371 . + . ID=Physo128627.1;Parent=Physo128627;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 424473 425195 . + 0 ID=Physo128627;Parent=Physo128627;rank=1 scaffold_5 . biological_region 434152 434152 0.999 - . logic_name=eponine scaffold_5 . biological_region 434655 434657 0.999 - . logic_name=eponine scaffold_5 . biological_region 435062 435068 0.999 + . logic_name=eponine scaffold_5 . biological_region 435093 435095 0.999 + . logic_name=eponine scaffold_5 . biological_region 435262 435266 0.999 + . logic_name=eponine scaffold_5 . biological_region 435934 435939 0.999 + . logic_name=eponine scaffold_5 . biological_region 435993 436004 0.999 - . logic_name=eponine scaffold_5 . biological_region 436741 436745 0.999 - . logic_name=eponine scaffold_5 . biological_region 437019 437023 0.999 - . logic_name=eponine scaffold_5 . biological_region 437041 437052 0.999 - . logic_name=eponine scaffold_5 . biological_region 437055 437060 0.999 + . logic_name=eponine scaffold_5 . biological_region 437065 437070 0.999 - . logic_name=eponine scaffold_5 . biological_region 437409 437411 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 429435 431759 . + . ID=Physo128628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50125;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 429435 431759 . + . ID=Physo128628;Parent=Physo128628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 429435 429636 . + 0 ID=Physo128628;Parent=Physo128628;rank=1 scaffold_5 . exon 429435 429636 . + . ID=Physo128628.1;Parent=Physo128628;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 429965 430653 . + 0 ID=Physo128628;Parent=Physo128628;rank=2 scaffold_5 . exon 429965 430653 . + . ID=Physo128628.2;Parent=Physo128628;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 430774 431358 . + 0 ID=Physo128628;Parent=Physo128628;rank=3 scaffold_5 . exon 430774 431358 . + . ID=Physo128628.3;Parent=Physo128628;constitutive=1;rank=3 scaffold_5 . CDS 431622 431759 . + 0 ID=Physo128628;Parent=Physo128628;rank=4 scaffold_5 . exon 431622 431759 . + . ID=Physo128628.4;Parent=Physo128628;constitutive=1;rank=4 scaffold_5 ensembl protein_coding_gene 433215 434048 . - . ID=Physo128629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50126;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 433215 434048 . - . ID=Physo128629;Parent=Physo128629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 433215 433570 . - 0 ID=Physo128629;Parent=Physo128629;rank=2 scaffold_5 . exon 433215 433570 . - . ID=Physo128629.2;Parent=Physo128629;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 433790 434048 . - 0 ID=Physo128629;Parent=Physo128629;rank=1 scaffold_5 . exon 433790 434048 . - . ID=Physo128629.1;Parent=Physo128629;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 434996 436496 . + . ID=Physo128630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50127;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 434996 436496 . + . ID=Physo128630;Parent=Physo128630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 434996 435361 . + 0 ID=Physo128630;Parent=Physo128630;rank=1 scaffold_5 . exon 434996 435361 . + . ID=Physo128630.1;Parent=Physo128630;constitutive=1;rank=1 scaffold_5 . CDS 435438 436496 . + 0 ID=Physo128630;Parent=Physo128630;rank=2 scaffold_5 . exon 435438 436496 . + . ID=Physo128630.2;Parent=Physo128630;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 436962 438334 . + . ID=Physo128631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50128;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 436962 438334 . + . ID=Physo128631;Parent=Physo128631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 436962 437060 . + 0 ID=Physo128631;Parent=Physo128631;rank=1 scaffold_5 . exon 436962 437060 . + . ID=Physo128631.1;Parent=Physo128631;constitutive=1;rank=1 scaffold_5 . CDS 437191 438104 . + 0 ID=Physo128631;Parent=Physo128631;rank=2 scaffold_5 . exon 437191 438104 . + . ID=Physo128631.2;Parent=Physo128631;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 438172 438334 . + 0 ID=Physo128631;Parent=Physo128631;rank=3 scaffold_5 . repeat_region 439311 439467 . ? . description=trf scaffold_5 . repeat_region 442859 442877 . ? . description=dust scaffold_5 . repeat_region 446308 446333 . ? . description=trf scaffold_5 . repeat_region 447635 447664 . ? . description=trf scaffold_5 ensembl protein_coding_gene 445338 446913 . - . ID=Physo108295;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50010;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 445338 446913 . - . ID=Physo108295;Parent=Physo108295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 445338 446913 . - . ID=Physo108295.1;Parent=Physo108295;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 445343 446875 . - 0 ID=Physo108295;Parent=Physo108295;rank=1 scaffold_5 . exon 438172 438334 . + . ID=Physo128631.3;Parent=Physo128631;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 ensembl protein_coding_gene 440286 441287 . - . ID=Physo128632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50129;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 440286 441287 . - . ID=Physo128632;Parent=Physo128632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 440286 441287 . - 0 ID=Physo128632;Parent=Physo128632;rank=1 scaffold_5 . exon 440286 441287 . - . ID=Physo128632.1;Parent=Physo128632;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 442075 443134 . - . ID=Physo128633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50130;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 442075 443134 . - . ID=Physo128633;Parent=Physo128633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 442075 443134 . - . ID=Physo128633.1;Parent=Physo128633;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . CDS 442076 443134 . - 0 ID=Physo128633;Parent=Physo128633;rank=1 scaffold_5 ensembl protein_coding_gene 443569 445071 . + . ID=Physo128634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50131;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 443569 445071 . + . ID=Physo128634;Parent=Physo128634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 443569 445071 . + 0 ID=Physo128634;Parent=Physo128634;rank=1 scaffold_5 . exon 443569 445071 . + . ID=Physo128634.1;Parent=Physo128634;constitutive=1;rank=1 scaffold_5 . biological_region 448908 448910 0.999 + . logic_name=eponine scaffold_5 . biological_region 448923 448929 0.999 - . logic_name=eponine scaffold_5 . biological_region 448932 448933 0.999 + . logic_name=eponine scaffold_5 . biological_region 449007 449014 0.999 - . logic_name=eponine scaffold_5 . biological_region 449078 449081 0.999 - . logic_name=eponine scaffold_5 . biological_region 449095 449101 0.999 - . logic_name=eponine scaffold_5 . biological_region 450417 450425 0.999 + . logic_name=eponine scaffold_5 . biological_region 450450 450453 0.999 - . logic_name=eponine scaffold_5 . biological_region 450482 450490 0.999 + . logic_name=eponine scaffold_5 . biological_region 450505 450506 0.999 + . logic_name=eponine scaffold_5 . biological_region 450706 450707 0.999 + . logic_name=eponine scaffold_5 . biological_region 450736 450739 0.999 + . logic_name=eponine scaffold_5 . biological_region 451041 451044 0.999 - . logic_name=eponine scaffold_5 . biological_region 455942 455942 0.999 + . logic_name=eponine scaffold_5 . biological_region 456131 456135 0.999 - . logic_name=eponine scaffold_5 . biological_region 456242 456243 0.999 + . logic_name=eponine scaffold_5 . biological_region 456350 456351 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 450208 450954 . + . ID=Physo128636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50133;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 450208 450954 . + . ID=Physo128636;Parent=Physo128636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 450208 450954 . + 0 ID=Physo128636;Parent=Physo128636;rank=1 scaffold_5 . exon 450208 450954 . + . ID=Physo128636.1;Parent=Physo128636;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 451477 452238 . - . ID=Physo128637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50134;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 451477 452238 . - . ID=Physo128637;Parent=Physo128637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 451477 452238 . - 0 ID=Physo128637;Parent=Physo128637;rank=1 scaffold_5 . exon 451477 452238 . - . ID=Physo128637.1;Parent=Physo128637;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 453723 454245 . + . ID=Physo128638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50135;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 453723 454245 . + . ID=Physo128638;Parent=Physo128638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 453723 453837 . + . ID=Physo128638.1;Parent=Physo128638;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 453799 453837 . + 0 ID=Physo128638;Parent=Physo128638;rank=1 scaffold_5 . CDS 453903 454089 . + 0 ID=Physo128638;Parent=Physo128638;rank=2 scaffold_5 . exon 453903 454089 . + . ID=Physo128638.2;Parent=Physo128638;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 454118 454245 . + 0 ID=Physo128638;Parent=Physo128638;rank=3 scaffold_5 . exon 454118 454245 . + . ID=Physo128638.3;Parent=Physo128638;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 ensembl protein_coding_gene 454833 455548 . - . ID=Physo128639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50136;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 454833 455548 . - . ID=Physo128639;Parent=Physo128639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 454833 455101 . - 0 ID=Physo128639;Parent=Physo128639;rank=3 scaffold_5 . exon 454833 455101 . - . ID=Physo128639.3;Parent=Physo128639;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 455124 455334 . - 0 ID=Physo128639;Parent=Physo128639;rank=2 scaffold_5 . exon 455124 455334 . - . ID=Physo128639.2;Parent=Physo128639;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 455400 455438 . - 0 ID=Physo128639;Parent=Physo128639;rank=1 scaffold_5 . exon 455400 455548 . - . ID=Physo128639.1;Parent=Physo128639;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 455911 457584 . + . ID=Physo128640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50137;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 455911 457584 . + . ID=Physo128640;Parent=Physo128640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 455911 457584 . + 0 ID=Physo128640;Parent=Physo128640;rank=1 scaffold_5 . exon 455911 457584 . + . ID=Physo128640.1;Parent=Physo128640;constitutive=1;rank=1 scaffold_5 . repeat_region 458027 458042 . ? . description=dust scaffold_5 . repeat_region 458766 458815 . ? . description=dust scaffold_5 . repeat_region 459483 459532 . ? . description=dust scaffold_5 . repeat_region 460821 460867 . ? . description=trf scaffold_5 . repeat_region 463296 463307 . ? . description=dust scaffold_5 . repeat_region 464457 464464 . ? . description=dust scaffold_5 . repeat_region 465176 465222 . ? . description=dust scaffold_5 ensembl protein_coding_gene 459033 459482 . - . ID=Physo128641;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50138;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 459033 459482 . - . ID=Physo128641;Parent=Physo128641;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 459033 459252 . - . ID=Physo128641.2;Parent=Physo128641;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_5 . CDS 459056 459252 . - 0 ID=Physo128641;Parent=Physo128641;rank=2 scaffold_5 . CDS 459354 459441 . - 0 ID=Physo128641;Parent=Physo128641;rank=1 scaffold_5 . exon 459354 459482 . - . ID=Physo128641.1;Parent=Physo128641;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 460098 460722 . + . ID=Physo128642;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50139;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 460098 460722 . + . ID=Physo128642;Parent=Physo128642;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 460098 460394 . + . ID=Physo128642.1;Parent=Physo128642;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 460278 460394 . + 0 ID=Physo128642;Parent=Physo128642;rank=1 scaffold_5 . CDS 460478 460720 . + 0 ID=Physo128642;Parent=Physo128642;rank=2 scaffold_5 . exon 460478 460722 . + . ID=Physo128642.2;Parent=Physo128642;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_5 . biological_region 468122 468123 0.999 + . logic_name=eponine scaffold_5 . repeat_region 476350 479331 . ? . description=dust scaffold_5 . repeat_region 482078 483378 . ? . description=dust scaffold_5 . biological_region 494499 494501 0.999 + . logic_name=eponine scaffold_5 . biological_region 494560 494567 0.999 - . logic_name=eponine scaffold_5 . biological_region 494618 494619 0.999 + . logic_name=eponine scaffold_5 . biological_region 495983 495989 0.999 + . logic_name=eponine scaffold_5 . biological_region 496033 496036 0.999 - . logic_name=eponine scaffold_5 . repeat_region 496944 497040 . ? . description=trf scaffold_5 ensembl protein_coding_gene 492361 494171 . - . ID=Physo128643;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50140;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 492361 494171 . - . ID=Physo128643;Parent=Physo128643;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 492361 493685 . - 0 ID=Physo128643;Parent=Physo128643;rank=4 scaffold_5 . exon 492361 493685 . - . ID=Physo128643.4;Parent=Physo128643;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 493726 493890 . - 0 ID=Physo128643;Parent=Physo128643;rank=3 scaffold_5 . exon 493726 493890 . - . ID=Physo128643.3;Parent=Physo128643;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 493911 494080 . - 0 ID=Physo128643;Parent=Physo128643;rank=2 scaffold_5 . exon 493911 494080 . - . ID=Physo128643.2;Parent=Physo128643;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 494107 494171 . - 0 ID=Physo128643;Parent=Physo128643;rank=1 scaffold_5 . exon 494107 494171 . - . ID=Physo128643.1;Parent=Physo128643;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 495450 497803 . - . ID=Physo128644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50141;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 495450 497803 . - . ID=Physo128644;Parent=Physo128644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 495450 496987 . - 0 ID=Physo128644;Parent=Physo128644;rank=3 scaffold_5 . exon 495450 496987 . - . ID=Physo128644.3;Parent=Physo128644;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 497030 497480 . - 0 ID=Physo128644;Parent=Physo128644;rank=2 scaffold_5 . exon 497030 497480 . - . ID=Physo128644.2;Parent=Physo128644;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 497600 497803 . - 0 ID=Physo128644;Parent=Physo128644;rank=1 scaffold_5 . repeat_region 497811 497853 . ? . description=dust scaffold_5 . repeat_region 500154 500162 . ? . description=dust scaffold_5 . repeat_region 505235 505248 . ? . description=dust scaffold_5 . repeat_region 505839 505883 . ? . description=dust scaffold_5 . exon 497600 497803 . - . ID=Physo128644.1;Parent=Physo128644;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 498759 501362 . - . ID=Physo128645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50142;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 498759 501362 . - . ID=Physo128645;Parent=Physo128645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 498759 501362 . - 0 ID=Physo128645;Parent=Physo128645;rank=1 scaffold_5 . exon 498759 501362 . - . ID=Physo128645.1;Parent=Physo128645;constitutive=1;rank=1 scaffold_5 . repeat_region 508281 509450 . ? . description=trf scaffold_5 . repeat_region 508281 509780 . ? . description=trf scaffold_5 . repeat_region 508290 509564 . ? . description=trf scaffold_5 . biological_region 508413 508414 0.999 - . logic_name=eponine scaffold_5 . biological_region 508537 508541 0.999 - . logic_name=eponine scaffold_5 . repeat_region 508587 508646 . ? . description=trf scaffold_5 . repeat_region 508617 509780 . ? . description=trf scaffold_5 . biological_region 508657 508661 0.999 - . logic_name=eponine scaffold_5 . biological_region 508747 508751 0.999 - . logic_name=eponine scaffold_5 . biological_region 508873 508878 0.999 - . logic_name=eponine scaffold_5 . biological_region 508999 509003 0.999 - . logic_name=eponine scaffold_5 . biological_region 509089 509093 0.999 - . logic_name=eponine scaffold_5 . biological_region 509216 509218 0.999 - . logic_name=eponine scaffold_5 . biological_region 509306 509309 0.999 - . logic_name=eponine scaffold_5 . repeat_region 509355 509837 . ? . description=trf scaffold_5 . repeat_region 509391 509654 . ? . description=trf scaffold_5 . biological_region 509431 509435 0.999 - . logic_name=eponine scaffold_5 . biological_region 509521 509525 0.999 - . logic_name=eponine scaffold_5 . biological_region 509647 509652 0.999 - . logic_name=eponine scaffold_5 . biological_region 509773 509777 0.999 - . logic_name=eponine scaffold_5 . repeat_region 509833 510466 . ? . description=trf scaffold_5 . repeat_region 516585 516613 . ? . description=trf scaffold_5 . biological_region 516622 516624 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 508212 510713 . - . ID=Physo128646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50143;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 508212 510713 . - . ID=Physo128646;Parent=Physo128646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 508212 510713 . - 0 ID=Physo128646;Parent=Physo128646;rank=1 scaffold_5 . exon 508212 510713 . - . ID=Physo128646.1;Parent=Physo128646;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 513420 515208 . + . ID=Physo128647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50144;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 513420 515208 . + . ID=Physo128647;Parent=Physo128647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 513420 515161 . + 0 ID=Physo128647;Parent=Physo128647;rank=1 scaffold_5 . exon 513420 515161 . + . ID=Physo128647.1;Parent=Physo128647;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 515181 515208 . + 0 ID=Physo128647;Parent=Physo128647;rank=2 scaffold_5 . exon 515181 515208 . + . ID=Physo128647.2;Parent=Physo128647;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 517504 518609 . + . ID=Physo108296;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50011;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 517504 518609 . + . ID=Physo108296;Parent=Physo108296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 517504 517713 . + 0 ID=Physo108296;Parent=Physo108296;rank=1 scaffold_5 . exon 517504 517713 . + . ID=Physo108296.1;Parent=Physo108296;constitutive=1;rank=1 scaffold_5 . CDS 517785 518609 . + 0 ID=Physo108296;Parent=Physo108296;rank=2 scaffold_5 . exon 517785 518609 . + . ID=Physo108296.2;Parent=Physo108296;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 523820 524309 . - . ID=Physo111193;biotype=protein_coding;external_name=estExt_Genewise1.C_50039;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 523820 524309 . - . ID=Physo111193;Parent=Physo111193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 523820 524309 . - . ID=Physo111193.1;Parent=Physo111193;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 523821 524126 . - 0 ID=Physo111193;Parent=Physo111193;rank=1 scaffold_5 ensembl protein_coding_gene 524912 525430 . + . ID=Physo111194;biotype=protein_coding;external_name=estExt_Genewise1.C_50040;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 524912 525430 . + . ID=Physo111194;Parent=Physo111194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 524912 525430 . + . ID=Physo111194.1;Parent=Physo111194;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 525131 525430 . + 0 ID=Physo111194;Parent=Physo111194;rank=1 scaffold_5 ensembl protein_coding_gene 518780 519458 . + . ID=Physo128649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50146;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 518780 519458 . + . ID=Physo128649;Parent=Physo128649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 518780 519276 . + 0 ID=Physo128649;Parent=Physo128649;rank=1 scaffold_5 . exon 518780 519276 . + . ID=Physo128649.1;Parent=Physo128649;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 519455 519458 . + 0 ID=Physo128649;Parent=Physo128649;rank=2 scaffold_5 . exon 519455 519458 . + . ID=Physo128649.2;Parent=Physo128649;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 519779 521347 . - . ID=Physo155510;biotype=protein_coding;external_name=C_scaffold_5000034;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 519779 521347 . - . ID=Physo155510;Parent=Physo155510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 519779 520057 . - 0 ID=Physo155510;Parent=Physo155510;rank=3 scaffold_5 . exon 519779 520057 . - . ID=Physo155510.3;Parent=Physo155510;constitutive=1;rank=3 scaffold_5 . CDS 520115 520834 . - 0 ID=Physo155510;Parent=Physo155510;rank=2 scaffold_5 . exon 520115 520834 . - . ID=Physo155510.2;Parent=Physo155510;constitutive=1;rank=2 scaffold_5 . CDS 520859 521347 . - 0 ID=Physo155510;Parent=Physo155510;rank=1 scaffold_5 . exon 520859 521347 . - . ID=Physo155510.1;Parent=Physo155510;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 525716 530439 . - . ID=Physo155511;biotype=protein_coding;external_name=C_scaffold_5000035;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 525716 530439 . - . ID=Physo155511;Parent=Physo155511;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 525716 525871 . - 0 ID=Physo155511;Parent=Physo155511;rank=7 scaffold_5 . exon 525716 525871 . - . ID=Physo155511.7;Parent=Physo155511;constitutive=1;rank=7 scaffold_5 . CDS 525899 527132 . - 0 ID=Physo155511;Parent=Physo155511;rank=6 scaffold_5 . exon 525899 527132 . - . ID=Physo155511.6;Parent=Physo155511;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 527376 528665 . - 0 ID=Physo155511;Parent=Physo155511;rank=5 scaffold_5 . CDS 529119 529206 . - 0 ID=Physo155511;Parent=Physo155511;rank=4 scaffold_5 . CDS 529295 529368 . - 0 ID=Physo155511;Parent=Physo155511;rank=3 scaffold_5 . CDS 529409 529837 . - 0 ID=Physo155511;Parent=Physo155511;rank=2 scaffold_5 . CDS 529898 530439 . - 0 ID=Physo155511;Parent=Physo155511;rank=1 scaffold_5 . biological_region 527597 527598 0.999 + . logic_name=eponine scaffold_5 . biological_region 527704 527704 0.999 + . logic_name=eponine scaffold_5 . biological_region 528083 528085 0.999 - . logic_name=eponine scaffold_5 . repeat_region 528735 528748 . ? . description=dust scaffold_5 . biological_region 529399 529406 0.999 - . logic_name=eponine scaffold_5 . biological_region 529452 529459 0.999 + . logic_name=eponine scaffold_5 . biological_region 532583 532583 0.999 + . logic_name=eponine scaffold_5 . biological_region 533205 533207 0.999 + . logic_name=eponine scaffold_5 . repeat_region 533441 533498 . ? . description=dust scaffold_5 . biological_region 533680 533684 0.999 + . logic_name=eponine scaffold_5 . biological_region 533773 533773 0.999 - . logic_name=eponine scaffold_5 . biological_region 533796 533797 0.999 + . logic_name=eponine scaffold_5 . biological_region 533799 533800 0.999 - . logic_name=eponine scaffold_5 . biological_region 533993 533993 0.999 + . logic_name=eponine scaffold_5 . biological_region 534013 534020 0.999 + . logic_name=eponine scaffold_5 . biological_region 534025 534027 0.999 + . logic_name=eponine scaffold_5 . biological_region 534044 534050 0.999 - . logic_name=eponine scaffold_5 . biological_region 534796 534804 0.999 + . logic_name=eponine scaffold_5 . biological_region 534847 534855 0.999 + . logic_name=eponine scaffold_5 . biological_region 534984 534987 0.999 - . logic_name=eponine scaffold_5 . biological_region 535008 535012 0.999 + . logic_name=eponine scaffold_5 . biological_region 535291 535296 0.999 + . logic_name=eponine scaffold_5 . repeat_region 536668 536675 . ? . description=dust scaffold_5 ensembl protein_coding_gene 531450 532049 . + . ID=Physo111195;biotype=protein_coding;external_name=estExt_Genewise1.C_50041;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 531450 532049 . + . ID=Physo111195;Parent=Physo111195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 531450 532049 . + . ID=Physo111195.1;Parent=Physo111195;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 531732 532049 . + 0 ID=Physo111195;Parent=Physo111195;rank=1 scaffold_5 ensembl protein_coding_gene 534844 535545 . - . ID=Physo128653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50150;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 534844 535545 . - . ID=Physo128653;Parent=Physo128653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 534844 535545 . - 0 ID=Physo128653;Parent=Physo128653;rank=1 scaffold_5 . exon 534844 535545 . - . ID=Physo128653.1;Parent=Physo128653;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 536378 537552 . + . ID=Physo128654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50151;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 536378 537552 . + . ID=Physo128654;Parent=Physo128654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 536378 536658 . + 0 ID=Physo128654;Parent=Physo128654;rank=1 scaffold_5 . exon 536378 536658 . + . ID=Physo128654.1;Parent=Physo128654;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 536730 536768 . + 0 ID=Physo128654;Parent=Physo128654;rank=2 scaffold_5 . exon 536730 536768 . + . ID=Physo128654.2;Parent=Physo128654;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 536915 537183 . + 0 ID=Physo128654;Parent=Physo128654;rank=3 scaffold_5 . exon 536915 537183 . + . ID=Physo128654.3;Parent=Physo128654;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 537257 537301 . + 0 ID=Physo128654;Parent=Physo128654;rank=4 scaffold_5 . exon 537257 537301 . + . ID=Physo128654.4;Parent=Physo128654;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 537530 537552 . + 0 ID=Physo128654;Parent=Physo128654;rank=5 scaffold_5 . exon 527376 528665 . - . ID=Physo155511.5;Parent=Physo155511;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_5 . exon 529119 529206 . - . ID=Physo155511.4;Parent=Physo155511;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . exon 529295 529368 . - . ID=Physo155511.3;Parent=Physo155511;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . exon 529409 529837 . - . ID=Physo155511.2;Parent=Physo155511;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . exon 529898 530439 . - . ID=Physo155511.1;Parent=Physo155511;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 532122 534182 . - . ID=Physo155514;biotype=protein_coding;external_name=C_scaffold_5000038;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 532122 534182 . - . ID=Physo155514;Parent=Physo155514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 532122 533411 . - 0 ID=Physo155514;Parent=Physo155514;rank=2 scaffold_5 . exon 532122 533411 . - . ID=Physo155514.2;Parent=Physo155514;constitutive=1;rank=2 scaffold_5 . CDS 533553 534182 . - 0 ID=Physo155514;Parent=Physo155514;rank=1 scaffold_5 . exon 533553 534182 . - . ID=Physo155514.1;Parent=Physo155514;constitutive=1;rank=1 scaffold_5 . repeat_region 543312 543448 . ? . description=trf scaffold_5 . repeat_region 543312 543466 . ? . description=trf scaffold_5 . exon 537530 537552 . + . ID=Physo128654.5;Parent=Physo128654;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 ensembl protein_coding_gene 539873 543438 . - . ID=Physo128655;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50152;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 539873 543438 . - . ID=Physo128655;Parent=Physo128655;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 539873 540120 . - 0 ID=Physo128655;Parent=Physo128655;rank=4 scaffold_5 . exon 539873 540120 . - . ID=Physo128655.4;Parent=Physo128655;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 540200 542097 . - 0 ID=Physo128655;Parent=Physo128655;rank=3 scaffold_5 . exon 540200 542097 . - . ID=Physo128655.3;Parent=Physo128655;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 542458 542888 . - 0 ID=Physo128655;Parent=Physo128655;rank=2 scaffold_5 . exon 542458 542888 . - . ID=Physo128655.2;Parent=Physo128655;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 543277 543438 . - 0 ID=Physo128655;Parent=Physo128655;rank=1 scaffold_5 . exon 543277 543438 . - . ID=Physo128655.1;Parent=Physo128655;constitutive=1;rank=1 scaffold_5 . repeat_region 553810 553817 . ? . description=dust scaffold_5 . biological_region 556265 556267 0.999 + . logic_name=eponine scaffold_5 . biological_region 556292 556303 0.999 + . logic_name=eponine scaffold_5 . biological_region 556332 556335 0.999 + . logic_name=eponine scaffold_5 . biological_region 556348 556351 0.999 - . logic_name=eponine scaffold_5 . biological_region 556447 556451 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 556283 558114 . + . ID=Physo155515;biotype=protein_coding;external_name=C_scaffold_5000039;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 556283 558114 . + . ID=Physo155515;Parent=Physo155515;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 556283 557009 . + 0 ID=Physo155515;Parent=Physo155515;rank=1 scaffold_5 . exon 556283 557009 . + . ID=Physo155515.1;Parent=Physo155515;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 557255 557978 . + 0 ID=Physo155515;Parent=Physo155515;rank=2 scaffold_5 . CDS 558054 558114 . + 0 ID=Physo155515;Parent=Physo155515;rank=3 scaffold_5 . repeat_region 565939 565963 . ? . description=trf scaffold_5 ensembl protein_coding_gene 558162 559782 . - . ID=Physo128657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50154;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 558162 559782 . - . ID=Physo128657;Parent=Physo128657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 558162 558669 . - 0 ID=Physo128657;Parent=Physo128657;rank=6 scaffold_5 . exon 558162 558669 . - . ID=Physo128657.6;Parent=Physo128657;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 558743 558817 . - 0 ID=Physo128657;Parent=Physo128657;rank=5 scaffold_5 . exon 558743 558817 . - . ID=Physo128657.5;Parent=Physo128657;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_5 . CDS 558897 558972 . - 0 ID=Physo128657;Parent=Physo128657;rank=4 scaffold_5 . exon 558897 558972 . - . ID=Physo128657.4;Parent=Physo128657;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . CDS 559047 559414 . - 0 ID=Physo128657;Parent=Physo128657;rank=3 scaffold_5 . exon 559047 559414 . - . ID=Physo128657.3;Parent=Physo128657;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 559501 559571 . - 0 ID=Physo128657;Parent=Physo128657;rank=2 scaffold_5 . exon 559501 559571 . - . ID=Physo128657.2;Parent=Physo128657;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 559639 559782 . - 0 ID=Physo128657;Parent=Physo128657;rank=1 scaffold_5 . exon 559639 559782 . - . ID=Physo128657.1;Parent=Physo128657;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 560166 561234 . - . ID=Physo128658;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50155;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 560166 561234 . - . ID=Physo128658;Parent=Physo128658;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 560166 560617 . - 0 ID=Physo128658;Parent=Physo128658;rank=2 scaffold_5 . exon 560166 560617 . - . ID=Physo128658.2;Parent=Physo128658;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 560703 561234 . - 0 ID=Physo128658;Parent=Physo128658;rank=1 scaffold_5 . exon 560703 561234 . - . ID=Physo128658.1;Parent=Physo128658;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 562225 563889 . - . ID=Physo128659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50156;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 562225 563889 . - . ID=Physo128659;Parent=Physo128659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 562225 563889 . - 0 ID=Physo128659;Parent=Physo128659;rank=1 scaffold_5 . exon 562225 563889 . - . ID=Physo128659.1;Parent=Physo128659;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 564115 564988 . + . ID=Physo128660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50157;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 564115 564988 . + . ID=Physo128660;Parent=Physo128660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 564115 564190 . + . ID=Physo128660.1;Parent=Physo128660;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 564163 564190 . + 0 ID=Physo128660;Parent=Physo128660;rank=1 scaffold_5 . CDS 564273 564496 . + 0 ID=Physo128660;Parent=Physo128660;rank=2 scaffold_5 . exon 564273 564496 . + . ID=Physo128660.2;Parent=Physo128660;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 564590 564988 . + 0 ID=Physo128660;Parent=Physo128660;rank=3 scaffold_5 . exon 564590 564988 . + . ID=Physo128660.3;Parent=Physo128660;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 565768 566298 . - . ID=Physo128661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50158;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 565768 566298 . - . ID=Physo128661;Parent=Physo128661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 565768 565892 . - . ID=Physo128661.2;Parent=Physo128661;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_5 . CDS 565779 565892 . - 0 ID=Physo128661;Parent=Physo128661;rank=2 scaffold_5 . CDS 565966 566298 . - 0 ID=Physo128661;Parent=Physo128661;rank=1 scaffold_5 . exon 565966 566298 . - . ID=Physo128661.1;Parent=Physo128661;constitutive=1;rank=1 scaffold_5 . exon 557255 557978 . + . ID=Physo155515.2;Parent=Physo155515;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . exon 558054 558114 . + . ID=Physo155515.3;Parent=Physo155515;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . biological_region 569520 569521 0.999 - . logic_name=eponine scaffold_5 . biological_region 569849 569852 0.999 - . logic_name=eponine scaffold_5 . biological_region 573376 573378 0.999 - . logic_name=eponine scaffold_5 . biological_region 574302 574305 0.999 - . logic_name=eponine scaffold_5 . biological_region 576428 576434 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 572364 573349 . + . ID=Physo128664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50161;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 572364 573349 . + . ID=Physo128664;Parent=Physo128664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 572364 572859 . + 0 ID=Physo128664;Parent=Physo128664;rank=1 scaffold_5 . exon 572364 572859 . + . ID=Physo128664.1;Parent=Physo128664;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 572930 573174 . + 0 ID=Physo128664;Parent=Physo128664;rank=2 scaffold_5 . exon 572930 573174 . + . ID=Physo128664.2;Parent=Physo128664;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 573230 573349 . + 0 ID=Physo128664;Parent=Physo128664;rank=3 scaffold_5 . exon 573230 573349 . + . ID=Physo128664.3;Parent=Physo128664;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 573648 574448 . + . ID=Physo128665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50162;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 573648 574448 . + . ID=Physo128665;Parent=Physo128665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 573648 574196 . + 0 ID=Physo128665;Parent=Physo128665;rank=1 scaffold_5 . exon 573648 574196 . + . ID=Physo128665.1;Parent=Physo128665;constitutive=1;rank=1 scaffold_5 . CDS 574226 574411 . + 0 ID=Physo128665;Parent=Physo128665;rank=2 scaffold_5 . exon 574226 574448 . + . ID=Physo128665.2;Parent=Physo128665;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_5 ensembl protein_coding_gene 569405 570464 . + . ID=Physo155521;biotype=protein_coding;external_name=C_scaffold_5000045;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 569405 570464 . + . ID=Physo155521;Parent=Physo155521;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 569405 569554 . + 0 ID=Physo155521;Parent=Physo155521;rank=1 scaffold_5 . exon 569405 569554 . + . ID=Physo155521.1;Parent=Physo155521;constitutive=1;rank=1 scaffold_5 . CDS 569724 569897 . + 0 ID=Physo155521;Parent=Physo155521;rank=2 scaffold_5 . exon 569724 569897 . + . ID=Physo155521.2;Parent=Physo155521;constitutive=1;rank=2 scaffold_5 . CDS 569979 570108 . + 0 ID=Physo155521;Parent=Physo155521;rank=3 scaffold_5 . exon 569979 570108 . + . ID=Physo155521.3;Parent=Physo155521;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 570226 570464 . + 0 ID=Physo155521;Parent=Physo155521;rank=4 scaffold_5 . exon 570226 570464 . + . ID=Physo155521.4;Parent=Physo155521;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 ensembl protein_coding_gene 570687 571904 . - . ID=Physo155522;biotype=protein_coding;external_name=C_scaffold_5000046;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 570687 571904 . - . ID=Physo155522;Parent=Physo155522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 570687 571586 . - 0 ID=Physo155522;Parent=Physo155522;rank=2 scaffold_5 . exon 570687 571586 . - . ID=Physo155522.2;Parent=Physo155522;constitutive=1;rank=2 scaffold_5 . CDS 571608 571904 . - 0 ID=Physo155522;Parent=Physo155522;rank=1 scaffold_5 . exon 571608 571904 . - . ID=Physo155522.1;Parent=Physo155522;constitutive=1;rank=1 scaffold_5 . repeat_region 578731 578831 . + . description=(CGA)n scaffold_5 . repeat_region 578763 578822 . ? . description=trf scaffold_5 . repeat_region 578766 578831 . ? . description=dust scaffold_5 . repeat_region 578770 578831 . ? . description=trf scaffold_5 . repeat_region 578783 578831 . ? . description=trf scaffold_5 . repeat_region 583439 583602 . ? . description=trf scaffold_5 . repeat_region 583529 583594 . ? . description=trf scaffold_5 . repeat_region 584187 586506 . + . description=GypsyPi-1c_I-int scaffold_5 ensembl protein_coding_gene 578171 578998 . + . ID=Physo108297;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50012;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 578171 578998 . + . ID=Physo108297;Parent=Physo108297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 578171 578998 . + . ID=Physo108297.1;Parent=Physo108297;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 578172 578936 . + 0 ID=Physo108297;Parent=Physo108297;rank=1 scaffold_5 ensembl protein_coding_gene 579521 580794 . - . ID=Physo128667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50164;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 579521 580794 . - . ID=Physo128667;Parent=Physo128667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 579521 579712 . - 0 ID=Physo128667;Parent=Physo128667;rank=4 scaffold_5 . exon 579521 579712 . - . ID=Physo128667.4;Parent=Physo128667;constitutive=1;rank=4 scaffold_5 . CDS 579781 579838 . - 0 ID=Physo128667;Parent=Physo128667;rank=3 scaffold_5 . exon 579781 579838 . - . ID=Physo128667.3;Parent=Physo128667;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 579887 580627 . - 0 ID=Physo128667;Parent=Physo128667;rank=2 scaffold_5 . exon 579887 580627 . - . ID=Physo128667.2;Parent=Physo128667;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 580724 580794 . - 0 ID=Physo128667;Parent=Physo128667;rank=1 scaffold_5 . exon 580724 580794 . - . ID=Physo128667.1;Parent=Physo128667;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 581642 587686 . + . ID=Physo128668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50165;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 581642 587686 . + . ID=Physo128668;Parent=Physo128668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 581642 582411 . + 0 ID=Physo128668;Parent=Physo128668;rank=1 scaffold_5 . exon 581642 582411 . + . ID=Physo128668.1;Parent=Physo128668;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 582485 584468 . + 0 ID=Physo128668;Parent=Physo128668;rank=2 scaffold_5 . exon 582485 584468 . + . ID=Physo128668.2;Parent=Physo128668;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 584492 584964 . + 0 ID=Physo128668;Parent=Physo128668;rank=3 scaffold_5 . exon 584492 584964 . + . ID=Physo128668.3;Parent=Physo128668;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 585090 585447 . + 0 ID=Physo128668;Parent=Physo128668;rank=4 scaffold_5 . exon 585090 585447 . + . ID=Physo128668.4;Parent=Physo128668;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 585518 587686 . + 0 ID=Physo128668;Parent=Physo128668;rank=5 scaffold_5 . exon 585518 587686 . + . ID=Physo128668.5;Parent=Physo128668;constitutive=1;rank=5 scaffold_5 . repeat_region 590712 590763 . + . description=(CTG)n scaffold_5 . biological_region 592164 592166 0.999 + . logic_name=eponine scaffold_5 . biological_region 592246 592250 0.999 + . logic_name=eponine scaffold_5 . biological_region 592303 592303 0.999 + . logic_name=eponine scaffold_5 . biological_region 592332 592338 0.999 + . logic_name=eponine scaffold_5 . biological_region 592337 592341 0.999 - . logic_name=eponine scaffold_5 . biological_region 592353 592362 0.999 + . logic_name=eponine scaffold_5 . biological_region 592370 592376 0.999 - . logic_name=eponine scaffold_5 . biological_region 592372 592375 0.999 + . logic_name=eponine scaffold_5 . biological_region 592400 592404 0.999 - . logic_name=eponine scaffold_5 . biological_region 592423 592429 0.999 - . logic_name=eponine scaffold_5 . biological_region 592445 592452 0.999 - . logic_name=eponine scaffold_5 . biological_region 592578 592579 0.999 - . logic_name=eponine scaffold_5 . biological_region 592634 592636 0.999 + . logic_name=eponine scaffold_5 . biological_region 592725 592727 0.999 - . logic_name=eponine scaffold_5 . biological_region 592828 592836 0.999 - . logic_name=eponine scaffold_5 . biological_region 593997 593998 0.999 + . logic_name=eponine scaffold_5 . biological_region 594074 594078 0.999 + . logic_name=eponine scaffold_5 . biological_region 594836 594836 0.999 + . logic_name=eponine scaffold_5 . biological_region 596278 596278 0.999 + . logic_name=eponine scaffold_5 . biological_region 596949 596950 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 588317 589003 . + . ID=Physo128669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50166;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 588317 589003 . + . ID=Physo128669;Parent=Physo128669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 588317 589003 . + 0 ID=Physo128669;Parent=Physo128669;rank=1 scaffold_5 . exon 588317 589003 . + . ID=Physo128669.1;Parent=Physo128669;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 592277 594370 . + . ID=Physo128670;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50167;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 592277 594370 . + . ID=Physo128670;Parent=Physo128670;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 592277 592511 . + 0 ID=Physo128670;Parent=Physo128670;rank=1 scaffold_5 . exon 592277 592511 . + . ID=Physo128670.1;Parent=Physo128670;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 592614 594370 . + 0 ID=Physo128670;Parent=Physo128670;rank=2 scaffold_5 . exon 592614 594370 . + . ID=Physo128670.2;Parent=Physo128670;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 594538 596562 . + . ID=Physo128671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50168;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 594538 596562 . + . ID=Physo128671;Parent=Physo128671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 594538 594546 . + 0 ID=Physo128671;Parent=Physo128671;rank=1 scaffold_5 . exon 594538 594546 . + . ID=Physo128671.1;Parent=Physo128671;constitutive=1;rank=1 scaffold_5 . CDS 594676 596562 . + 0 ID=Physo128671;Parent=Physo128671;rank=2 scaffold_5 . exon 594676 596562 . + . ID=Physo128671.2;Parent=Physo128671;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 596716 598076 . - . ID=Physo128672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50169;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 596716 598076 . - . ID=Physo128672;Parent=Physo128672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 596716 597954 . - 0 ID=Physo128672;Parent=Physo128672;rank=2 scaffold_5 . exon 596716 597954 . - . ID=Physo128672.2;Parent=Physo128672;constitutive=1;rank=2 scaffold_5 . CDS 598023 598076 . - 0 ID=Physo128672;Parent=Physo128672;rank=1 scaffold_5 . repeat_region 602472 602507 . ? . description=trf scaffold_5 . exon 598023 598076 . - . ID=Physo128672.1;Parent=Physo128672;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 598241 614258 . + . ID=Physo155525;biotype=protein_coding;external_name=C_scaffold_5000049;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 598241 614258 . + . ID=Physo155525;Parent=Physo155525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 598241 599185 . + 0 ID=Physo155525;Parent=Physo155525;rank=1 scaffold_5 . exon 598241 599185 . + . ID=Physo155525.1;Parent=Physo155525;constitutive=1;rank=1 scaffold_5 . CDS 599219 599504 . + 0 ID=Physo155525;Parent=Physo155525;rank=2 scaffold_5 . exon 599219 599504 . + . ID=Physo155525.2;Parent=Physo155525;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 599591 599750 . + 0 ID=Physo155525;Parent=Physo155525;rank=3 scaffold_5 . exon 599591 599750 . + . ID=Physo155525.3;Parent=Physo155525;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_5 . CDS 600155 600216 . + 0 ID=Physo155525;Parent=Physo155525;rank=4 scaffold_5 . exon 600155 600216 . + . ID=Physo155525.4;Parent=Physo155525;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 600299 600391 . + 0 ID=Physo155525;Parent=Physo155525;rank=5 scaffold_5 . exon 600299 600391 . + . ID=Physo155525.5;Parent=Physo155525;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 600577 601032 . + 0 ID=Physo155525;Parent=Physo155525;rank=6 scaffold_5 . exon 600577 601032 . + . ID=Physo155525.6;Parent=Physo155525;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_5 . CDS 601093 601211 . + 0 ID=Physo155525;Parent=Physo155525;rank=7 scaffold_5 . exon 601093 601211 . + . ID=Physo155525.7;Parent=Physo155525;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 . CDS 601371 601556 . + 0 ID=Physo155525;Parent=Physo155525;rank=8 scaffold_5 . exon 601371 601556 . + . ID=Physo155525.8;Parent=Physo155525;constitutive=1;rank=8 scaffold_5 . CDS 601581 601747 . + 0 ID=Physo155525;Parent=Physo155525;rank=9 scaffold_5 . exon 601581 601747 . + . ID=Physo155525.9;Parent=Physo155525;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_5 . CDS 601862 602455 . + 0 ID=Physo155525;Parent=Physo155525;rank=10 scaffold_5 . exon 601862 602455 . + . ID=Physo155525.10;Parent=Physo155525;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=10 scaffold_5 . CDS 602522 602729 . + 0 ID=Physo155525;Parent=Physo155525;rank=11 scaffold_5 . exon 602522 602729 . + . ID=Physo155525.11;Parent=Physo155525;constitutive=1;ensembl_phase=2;rank=11 scaffold_5 . CDS 602958 603176 . + 0 ID=Physo155525;Parent=Physo155525;rank=12 scaffold_5 . exon 602958 603176 . + . ID=Physo155525.12;Parent=Physo155525;constitutive=1;rank=12 scaffold_5 . CDS 603234 603519 . + 0 ID=Physo155525;Parent=Physo155525;rank=13 scaffold_5 . exon 603234 603519 . + . ID=Physo155525.13;Parent=Physo155525;constitutive=1;ensembl_end_phase=1;rank=13 scaffold_5 . CDS 603568 603825 . + 0 ID=Physo155525;Parent=Physo155525;rank=14 scaffold_5 . exon 603568 603825 . + . ID=Physo155525.14;Parent=Physo155525;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=14 scaffold_5 . CDS 603847 614258 . + 0 ID=Physo155525;Parent=Physo155525;rank=15 scaffold_5 . exon 603847 614258 . + . ID=Physo155525.15;Parent=Physo155525;constitutive=1;ensembl_phase=1;rank=15 scaffold_5 . biological_region 611796 611799 0.999 + . logic_name=eponine scaffold_5 . biological_region 612846 612849 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 614599 620340 . + . ID=Physo128674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50171;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 614599 620340 . + . ID=Physo128674;Parent=Physo128674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 614599 620340 . + 0 ID=Physo128674;Parent=Physo128674;rank=1 scaffold_5 . exon 614599 620340 . + . ID=Physo128674.1;Parent=Physo128674;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 620389 626283 . - . ID=Physo128675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50172;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 620389 626283 . - . ID=Physo128675;Parent=Physo128675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 620389 626283 . - . ID=Physo128675.1;Parent=Physo128675;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . CDS 620434 626283 . - 0 ID=Physo128675;Parent=Physo128675;rank=1 scaffold_5 . repeat_region 626909 626917 . ? . description=dust scaffold_5 . repeat_region 627501 627508 . ? . description=dust scaffold_5 . biological_region 628586 628586 0.999 - . logic_name=eponine scaffold_5 . repeat_region 629010 629027 . ? . description=dust scaffold_5 . biological_region 629269 629275 0.999 + . logic_name=eponine scaffold_5 . biological_region 629313 629318 0.999 + . logic_name=eponine scaffold_5 . biological_region 629390 629394 0.999 - . logic_name=eponine scaffold_5 . biological_region 629730 629736 0.999 + . logic_name=eponine scaffold_5 . biological_region 629759 629761 0.999 + . logic_name=eponine scaffold_5 . biological_region 629849 629851 0.999 - . logic_name=eponine scaffold_5 . biological_region 630178 630183 0.999 + . logic_name=eponine scaffold_5 . biological_region 630249 630253 0.999 + . logic_name=eponine scaffold_5 . biological_region 630281 630287 0.999 - . logic_name=eponine scaffold_5 . repeat_region 630324 630340 . ? . description=dust scaffold_5 . biological_region 630452 630456 0.999 - . logic_name=eponine scaffold_5 . biological_region 630492 630496 0.999 + . logic_name=eponine scaffold_5 . biological_region 630695 630699 0.999 + . logic_name=eponine scaffold_5 . biological_region 631166 631167 0.999 - . logic_name=eponine scaffold_5 . biological_region 631439 631444 0.999 + . logic_name=eponine scaffold_5 . biological_region 633669 633670 0.999 + . logic_name=eponine scaffold_5 . repeat_region 634718 634815 . + . description=(TCG)n scaffold_5 . repeat_region 634723 634785 . ? . description=dust scaffold_5 . biological_region 636243 636243 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 635377 637074 . - . ID=Physo111217;biotype=protein_coding;external_name=estExt_Genewise1.C_50063;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 635377 637074 . - . ID=Physo111217;Parent=Physo111217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 635377 636327 . - 0 ID=Physo111217;Parent=Physo111217;rank=2 scaffold_5 . exon 635377 636327 . - . ID=Physo111217.2;Parent=Physo111217;constitutive=1;rank=2 scaffold_5 . CDS 636487 637062 . - 0 ID=Physo111217;Parent=Physo111217;rank=1 scaffold_5 . exon 636487 637074 . - . ID=Physo111217.1;Parent=Physo111217;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 629239 629835 . - . ID=Physo128676;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50173;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 629239 629835 . - . ID=Physo128676;Parent=Physo128676;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 629239 629835 . - 0 ID=Physo128676;Parent=Physo128676;rank=1 scaffold_5 . exon 629239 629835 . - . ID=Physo128676.1;Parent=Physo128676;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 631827 632651 . + . ID=Physo128677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50174;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 631827 632651 . + . ID=Physo128677;Parent=Physo128677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 631827 632651 . + 0 ID=Physo128677;Parent=Physo128677;rank=1 scaffold_5 . exon 631827 632651 . + . ID=Physo128677.1;Parent=Physo128677;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 633456 634154 . + . ID=Physo128678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50175;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 633456 634154 . + . ID=Physo128678;Parent=Physo128678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 633456 634154 . + 0 ID=Physo128678;Parent=Physo128678;rank=1 scaffold_5 . exon 633456 634154 . + . ID=Physo128678.1;Parent=Physo128678;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 639348 641241 . + . ID=Physo108298;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50013;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 639348 641241 . + . ID=Physo108298;Parent=Physo108298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 639348 639788 . + 0 ID=Physo108298;Parent=Physo108298;rank=1 scaffold_5 . exon 639348 639788 . + . ID=Physo108298.1;Parent=Physo108298;constitutive=1;rank=1 scaffold_5 . CDS 639856 640101 . + 0 ID=Physo108298;Parent=Physo108298;rank=2 scaffold_5 . exon 639856 640101 . + . ID=Physo108298.2;Parent=Physo108298;constitutive=1;rank=2 scaffold_5 . CDS 640132 640412 . + 0 ID=Physo108298;Parent=Physo108298;rank=3 scaffold_5 . exon 640132 640412 . + . ID=Physo108298.3;Parent=Physo108298;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 640499 640503 . + 0 ID=Physo108298;Parent=Physo108298;rank=4 scaffold_5 . exon 640499 640503 . + . ID=Physo108298.4;Parent=Physo108298;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 641186 641241 . + 0 ID=Physo108298;Parent=Physo108298;rank=5 scaffold_5 . exon 641186 641241 . + . ID=Physo108298.5;Parent=Physo108298;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 ensembl protein_coding_gene 637600 639003 . - . ID=Physo128680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50177;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 637600 639003 . - . ID=Physo128680;Parent=Physo128680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 637600 639003 . - . ID=Physo128680.1;Parent=Physo128680;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . CDS 637648 639003 . - 0 ID=Physo128680;Parent=Physo128680;rank=1 scaffold_5 ensembl protein_coding_gene 641449 644905 . - . ID=Physo128682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50179;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 641449 644905 . - . ID=Physo128682;Parent=Physo128682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 641449 644905 . - . ID=Physo128682.1;Parent=Physo128682;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . CDS 641450 644905 . - 0 ID=Physo128682;Parent=Physo128682;rank=1 scaffold_5 ensembl protein_coding_gene 645254 647380 . - . ID=Physo128683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50180;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 645254 647380 . - . ID=Physo128683;Parent=Physo128683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 645254 647380 . - 0 ID=Physo128683;Parent=Physo128683;rank=1 scaffold_5 . exon 645254 647380 . - . ID=Physo128683.1;Parent=Physo128683;constitutive=1;rank=1 scaffold_5 . biological_region 647940 647941 0.999 + . logic_name=eponine scaffold_5 . biological_region 648079 648080 0.999 + . logic_name=eponine scaffold_5 . biological_region 648321 648325 0.999 - . logic_name=eponine scaffold_5 . biological_region 648327 648330 0.999 + . logic_name=eponine scaffold_5 . biological_region 648374 648382 0.999 + . logic_name=eponine scaffold_5 . biological_region 649961 649964 0.999 - . logic_name=eponine scaffold_5 . biological_region 650189 650191 0.999 - . logic_name=eponine scaffold_5 . biological_region 652591 652591 0.999 - . logic_name=eponine scaffold_5 . repeat_region 652879 652923 . ? . description=trf scaffold_5 . repeat_region 652879 652924 . ? . description=trf scaffold_5 . repeat_region 652879 652924 . ? . description=dust scaffold_5 . biological_region 654187 654188 0.999 + . logic_name=eponine scaffold_5 . repeat_region 654852 654901 . ? . description=dust scaffold_5 . repeat_region 655030 655055 . ? . description=trf scaffold_5 . biological_region 655661 655661 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 652780 653164 . - . ID=Physo111225;biotype=protein_coding;external_name=estExt_Genewise1.C_50071;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 652780 653164 . - . ID=Physo111225;Parent=Physo111225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 652780 653164 . - . ID=Physo111225.1;Parent=Physo111225;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 652936 653163 . - 0 ID=Physo111225;Parent=Physo111225;rank=1 scaffold_5 ensembl protein_coding_gene 647829 652482 . - . ID=Physo128684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50181;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 647829 652482 . - . ID=Physo128684;Parent=Physo128684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 647829 651890 . - 0 ID=Physo128684;Parent=Physo128684;rank=4 scaffold_5 . exon 647829 651890 . - . ID=Physo128684.4;Parent=Physo128684;constitutive=1;rank=4 scaffold_5 . CDS 651961 652047 . - 0 ID=Physo128684;Parent=Physo128684;rank=3 scaffold_5 . exon 651961 652047 . - . ID=Physo128684.3;Parent=Physo128684;constitutive=1;rank=3 scaffold_5 . CDS 652130 652244 . - 0 ID=Physo128684;Parent=Physo128684;rank=2 scaffold_5 . exon 652130 652244 . - . ID=Physo128684.2;Parent=Physo128684;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 652322 652482 . - 0 ID=Physo128684;Parent=Physo128684;rank=1 scaffold_5 . exon 652322 652482 . - . ID=Physo128684.1;Parent=Physo128684;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 653871 654647 . + . ID=Physo128686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50183;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 653871 654647 . + . ID=Physo128686;Parent=Physo128686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 653871 654647 . + 0 ID=Physo128686;Parent=Physo128686;rank=1 scaffold_5 . exon 653871 654647 . + . ID=Physo128686.1;Parent=Physo128686;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 660880 661740 . + . ID=Physo128687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50184;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 660880 661740 . + . ID=Physo128687;Parent=Physo128687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 660880 661740 . + 0 ID=Physo128687;Parent=Physo128687;rank=1 scaffold_5 . exon 660880 661740 . + . ID=Physo128687.1;Parent=Physo128687;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 662288 663564 . - . ID=Physo128688;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50185;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 662288 663564 . - . ID=Physo128688;Parent=Physo128688;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 662288 662916 . - 0 ID=Physo128688;Parent=Physo128688;rank=3 scaffold_5 . exon 662288 662916 . - . ID=Physo128688.3;Parent=Physo128688;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 662936 663160 . - 0 ID=Physo128688;Parent=Physo128688;rank=2 scaffold_5 . exon 662936 663160 . - . ID=Physo128688.2;Parent=Physo128688;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 663219 663564 . - 0 ID=Physo128688;Parent=Physo128688;rank=1 scaffold_5 . exon 663219 663564 . - . ID=Physo128688.1;Parent=Physo128688;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 665219 665671 . + . ID=Physo128689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50186;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 665219 665671 . + . ID=Physo128689;Parent=Physo128689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 665219 665671 . + 0 ID=Physo128689;Parent=Physo128689;rank=1 scaffold_5 . exon 665219 665671 . + . ID=Physo128689.1;Parent=Physo128689;constitutive=1;rank=1 scaffold_5 . biological_region 675307 675307 0.999 + . logic_name=eponine scaffold_5 . repeat_region 675629 675667 . ? . description=trf scaffold_5 . repeat_region 679320 679329 . ? . description=dust scaffold_5 ensembl protein_coding_gene 677472 678715 . - . ID=Physo128690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50187;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 677472 678715 . - . ID=Physo128690;Parent=Physo128690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 677472 678715 . - . ID=Physo128690.1;Parent=Physo128690;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . CDS 677666 678715 . - 0 ID=Physo128690;Parent=Physo128690;rank=1 scaffold_5 ensembl protein_coding_gene 682132 682887 . - . ID=Physo128691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50188;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 682132 682887 . - . ID=Physo128691;Parent=Physo128691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 682132 682887 . - 0 ID=Physo128691;Parent=Physo128691;rank=1 scaffold_5 . exon 682132 682887 . - . ID=Physo128691.1;Parent=Physo128691;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 685293 686962 . + . ID=Physo128692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50189;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 685293 686962 . + . ID=Physo128692;Parent=Physo128692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 685293 685502 . + 0 ID=Physo128692;Parent=Physo128692;rank=1 scaffold_5 . exon 685293 685502 . + . ID=Physo128692.1;Parent=Physo128692;constitutive=1;rank=1 scaffold_5 . CDS 685610 686962 . + 0 ID=Physo128692;Parent=Physo128692;rank=2 scaffold_5 . exon 685610 686962 . + . ID=Physo128692.2;Parent=Physo128692;constitutive=1;rank=2 scaffold_5 . biological_region 687220 687224 0.999 + . logic_name=eponine scaffold_5 . biological_region 690670 690671 0.999 + . logic_name=eponine scaffold_5 . repeat_region 690898 690935 . ? . description=trf scaffold_5 . biological_region 693272 693278 0.999 + . logic_name=eponine scaffold_5 . biological_region 694528 694529 0.999 - . logic_name=eponine scaffold_5 . biological_region 694820 694821 0.999 - . logic_name=eponine scaffold_5 . biological_region 694855 694857 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 693916 695256 . + . ID=Physo108300;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50015;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 693916 695256 . + . ID=Physo108300;Parent=Physo108300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 693916 694037 . + . ID=Physo108300.1;Parent=Physo108300;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 693920 694037 . + 0 ID=Physo108300;Parent=Physo108300;rank=1 scaffold_5 . CDS 694100 694254 . + 0 ID=Physo108300;Parent=Physo108300;rank=2 scaffold_5 . exon 694100 694254 . + . ID=Physo108300.2;Parent=Physo108300;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 694330 694883 . + 0 ID=Physo108300;Parent=Physo108300;rank=3 scaffold_5 . exon 694330 694883 . + . ID=Physo108300.3;Parent=Physo108300;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 694982 695048 . + 0 ID=Physo108300;Parent=Physo108300;rank=4 scaffold_5 . exon 694982 695048 . + . ID=Physo108300.4;Parent=Physo108300;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 695110 695256 . + 0 ID=Physo108300;Parent=Physo108300;rank=5 scaffold_5 . exon 695110 695256 . + . ID=Physo108300.5;Parent=Physo108300;constitutive=1;rank=5 scaffold_5 ensembl protein_coding_gene 687172 689714 . - . ID=Physo128693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50190;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 687172 689714 . - . ID=Physo128693;Parent=Physo128693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 687172 687666 . - 0 ID=Physo128693;Parent=Physo128693;rank=6 scaffold_5 . exon 687172 687666 . - . ID=Physo128693.6;Parent=Physo128693;constitutive=1;rank=6 scaffold_5 . CDS 687746 688122 . - 0 ID=Physo128693;Parent=Physo128693;rank=5 scaffold_5 . exon 687746 688122 . - . ID=Physo128693.5;Parent=Physo128693;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 688191 688248 . - 0 ID=Physo128693;Parent=Physo128693;rank=4 scaffold_5 . exon 688191 688248 . - . ID=Physo128693.4;Parent=Physo128693;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 688308 688886 . - 0 ID=Physo128693;Parent=Physo128693;rank=3 scaffold_5 . exon 688308 688886 . - . ID=Physo128693.3;Parent=Physo128693;constitutive=1;rank=3 scaffold_5 . CDS 689013 689080 . - 0 ID=Physo128693;Parent=Physo128693;rank=2 scaffold_5 . exon 689013 689080 . - . ID=Physo128693.2;Parent=Physo128693;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 689171 689714 . - 0 ID=Physo128693;Parent=Physo128693;rank=1 scaffold_5 . exon 689171 689714 . - . ID=Physo128693.1;Parent=Physo128693;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 689854 693765 . + . ID=Physo128694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50191;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 689854 693765 . + . ID=Physo128694;Parent=Physo128694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 689854 693765 . + 0 ID=Physo128694;Parent=Physo128694;rank=1 scaffold_5 . exon 689854 693765 . + . ID=Physo128694.1;Parent=Physo128694;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 695482 702426 . - . ID=Physo128696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50193;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 695482 702426 . - . ID=Physo128696;Parent=Physo128696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 695482 695588 . - 0 ID=Physo128696;Parent=Physo128696;rank=3 scaffold_5 . exon 695482 695588 . - . ID=Physo128696.3;Parent=Physo128696;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 695679 702213 . - 0 ID=Physo128696;Parent=Physo128696;rank=2 scaffold_5 . exon 695679 702213 . - . ID=Physo128696.2;Parent=Physo128696;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 702346 702426 . - 0 ID=Physo128696;Parent=Physo128696;rank=1 scaffold_5 . exon 702346 702426 . - . ID=Physo128696.1;Parent=Physo128696;constitutive=1;rank=1 scaffold_5 . biological_region 707790 707792 0.999 + . logic_name=eponine scaffold_5 . biological_region 707820 707824 0.999 - . logic_name=eponine scaffold_5 . biological_region 707829 707833 0.999 + . logic_name=eponine scaffold_5 . biological_region 707848 707853 0.999 - . logic_name=eponine scaffold_5 . biological_region 708020 708023 0.999 + . logic_name=eponine scaffold_5 . biological_region 708143 708145 0.999 - . logic_name=eponine scaffold_5 . biological_region 709190 709194 0.999 - . logic_name=eponine scaffold_5 . biological_region 709229 709232 0.999 + . logic_name=eponine scaffold_5 . biological_region 709247 709249 0.999 + . logic_name=eponine scaffold_5 . biological_region 709398 709403 0.999 + . logic_name=eponine scaffold_5 . biological_region 709416 709419 0.999 - . logic_name=eponine scaffold_5 . biological_region 709483 709494 0.999 - . logic_name=eponine scaffold_5 . biological_region 709518 709520 0.999 - . logic_name=eponine scaffold_5 . biological_region 710338 710343 0.999 + . logic_name=eponine scaffold_5 . biological_region 710380 710380 0.999 - . logic_name=eponine scaffold_5 . biological_region 710402 710402 0.999 + . logic_name=eponine scaffold_5 . biological_region 710452 710453 0.999 - . logic_name=eponine scaffold_5 . biological_region 710505 710513 0.999 + . logic_name=eponine scaffold_5 . biological_region 710714 710715 0.999 - . logic_name=eponine scaffold_5 . repeat_region 710796 710845 . ? . description=dust scaffold_5 . biological_region 710886 710889 0.999 + . logic_name=eponine scaffold_5 . biological_region 710900 710903 0.999 - . logic_name=eponine scaffold_5 . biological_region 711042 711047 0.999 - . logic_name=eponine scaffold_5 . biological_region 712292 712295 0.999 + . logic_name=eponine scaffold_5 . biological_region 712358 712366 0.999 - . logic_name=eponine scaffold_5 . biological_region 712417 712418 0.999 + . logic_name=eponine scaffold_5 . biological_region 712560 712562 0.999 - . logic_name=eponine scaffold_5 . biological_region 712761 712763 0.999 + . logic_name=eponine scaffold_5 . biological_region 712775 712784 0.999 - . logic_name=eponine scaffold_5 . biological_region 712781 712786 0.999 + . logic_name=eponine scaffold_5 . biological_region 712806 712810 0.999 - . logic_name=eponine scaffold_5 . biological_region 712826 712832 0.999 - . logic_name=eponine scaffold_5 . biological_region 712833 712835 0.999 + . logic_name=eponine scaffold_5 . biological_region 713053 713057 0.999 + . logic_name=eponine scaffold_5 . biological_region 713157 713159 0.999 + . logic_name=eponine scaffold_5 . biological_region 713157 713162 0.999 - . logic_name=eponine scaffold_5 . biological_region 713211 713216 0.999 + . logic_name=eponine scaffold_5 . biological_region 713242 713256 0.999 + . logic_name=eponine scaffold_5 . biological_region 713266 713268 0.999 + . logic_name=eponine scaffold_5 . biological_region 713340 713342 0.999 - . logic_name=eponine scaffold_5 . biological_region 713368 713372 0.999 - . logic_name=eponine scaffold_5 . biological_region 713440 713444 0.999 - . logic_name=eponine scaffold_5 . biological_region 713701 713705 0.999 - . logic_name=eponine scaffold_5 . biological_region 713759 713759 0.999 + . logic_name=eponine scaffold_5 . biological_region 713827 713832 0.999 - . logic_name=eponine scaffold_5 . biological_region 714189 714194 0.999 + . logic_name=eponine scaffold_5 . biological_region 714231 714235 0.999 - . logic_name=eponine scaffold_5 . biological_region 714236 714236 0.999 + . logic_name=eponine scaffold_5 . repeat_region 714292 714327 . ? . description=trf scaffold_5 . biological_region 714302 714307 0.999 - . logic_name=eponine scaffold_5 . biological_region 714961 714962 0.999 + . logic_name=eponine scaffold_5 . biological_region 714976 714987 0.999 + . logic_name=eponine scaffold_5 . biological_region 715107 715111 0.999 - . logic_name=eponine scaffold_5 . biological_region 715236 715241 0.999 - . logic_name=eponine scaffold_5 . biological_region 715252 715256 0.999 - . logic_name=eponine scaffold_5 . biological_region 715390 715397 0.999 - . logic_name=eponine scaffold_5 . biological_region 715542 715543 0.999 + . logic_name=eponine scaffold_5 . biological_region 715630 715633 0.999 - . logic_name=eponine scaffold_5 . biological_region 715684 715686 0.999 + . logic_name=eponine scaffold_5 . repeat_region 716183 716190 . ? . description=dust scaffold_5 ensembl protein_coding_gene 707044 707934 . - . ID=Physo128697;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50194;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 707044 707934 . - . ID=Physo128697;Parent=Physo128697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 707044 707934 . - 0 ID=Physo128697;Parent=Physo128697;rank=1 scaffold_5 . exon 707044 707934 . - . ID=Physo128697.1;Parent=Physo128697;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 708447 709951 . + . ID=Physo128698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50195;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 708447 709951 . + . ID=Physo128698;Parent=Physo128698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 708447 709574 . + 0 ID=Physo128698;Parent=Physo128698;rank=1 scaffold_5 . exon 708447 709574 . + . ID=Physo128698.1;Parent=Physo128698;constitutive=1;rank=1 scaffold_5 . CDS 709658 709951 . + 0 ID=Physo128698;Parent=Physo128698;rank=2 scaffold_5 . exon 709658 709951 . + . ID=Physo128698.2;Parent=Physo128698;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 713601 714368 . + . ID=Physo128699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50196;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 713601 714368 . + . ID=Physo128699;Parent=Physo128699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 713601 714368 . + 0 ID=Physo128699;Parent=Physo128699;rank=1 scaffold_5 . exon 713601 714368 . + . ID=Physo128699.1;Parent=Physo128699;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 716214 716573 . - . ID=Physo128700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50197;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 716214 716573 . - . ID=Physo128700;Parent=Physo128700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 716214 716573 . - 0 ID=Physo128700;Parent=Physo128700;rank=1 scaffold_5 . exon 716214 716573 . - . ID=Physo128700.1;Parent=Physo128700;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 716871 717296 . - . ID=Physo128701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50198;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 716871 717296 . - . ID=Physo128701;Parent=Physo128701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 716871 717296 . - 0 ID=Physo128701;Parent=Physo128701;rank=1 scaffold_5 . exon 716871 717296 . - . ID=Physo128701.1;Parent=Physo128701;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 718866 721203 . - . ID=Physo128702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50199;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 718866 721203 . - . ID=Physo128702;Parent=Physo128702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 718866 720530 . - 0 ID=Physo128702;Parent=Physo128702;rank=4 scaffold_5 . exon 718866 720530 . - . ID=Physo128702.4;Parent=Physo128702;constitutive=1;rank=4 scaffold_5 . CDS 720611 720697 . - 0 ID=Physo128702;Parent=Physo128702;rank=3 scaffold_5 . exon 720611 720697 . - . ID=Physo128702.3;Parent=Physo128702;constitutive=1;rank=3 scaffold_5 . CDS 720753 721074 . - 0 ID=Physo128702;Parent=Physo128702;rank=2 scaffold_5 . exon 720753 721074 . - . ID=Physo128702.2;Parent=Physo128702;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 721151 721203 . - 0 ID=Physo128702;Parent=Physo128702;rank=1 scaffold_5 . exon 721151 721203 . - . ID=Physo128702.1;Parent=Physo128702;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 722080 723228 . + . ID=Physo128703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50200;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 722080 723228 . + . ID=Physo128703;Parent=Physo128703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 722080 723228 . + 0 ID=Physo128703;Parent=Physo128703;rank=1 scaffold_5 . exon 722080 723228 . + . ID=Physo128703.1;Parent=Physo128703;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 725096 726083 . - . ID=Physo155528;biotype=protein_coding;external_name=C_scaffold_5000052;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 725096 726083 . - . ID=Physo155528;Parent=Physo155528;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 725096 725287 . - 0 ID=Physo155528;Parent=Physo155528;rank=4 scaffold_5 . exon 725096 725287 . - . ID=Physo155528.4;Parent=Physo155528;constitutive=1;rank=4 scaffold_5 . CDS 725365 725457 . - 0 ID=Physo155528;Parent=Physo155528;rank=3 scaffold_5 . exon 725365 725457 . - . ID=Physo155528.3;Parent=Physo155528;constitutive=1;rank=3 scaffold_5 . CDS 725526 725982 . - 0 ID=Physo155528;Parent=Physo155528;rank=2 scaffold_5 . exon 725526 725982 . - . ID=Physo155528.2;Parent=Physo155528;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 726046 726083 . - 0 ID=Physo155528;Parent=Physo155528;rank=1 scaffold_5 . exon 726046 726083 . - . ID=Physo155528.1;Parent=Physo155528;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . biological_region 726419 726420 0.999 - . logic_name=eponine scaffold_5 . biological_region 727323 727327 0.999 - . logic_name=eponine scaffold_5 . repeat_region 727923 727944 . ? . description=trf scaffold_5 . repeat_region 727923 727944 . ? . description=dust scaffold_5 . biological_region 728956 728959 0.999 - . logic_name=eponine scaffold_5 . biological_region 729156 729156 0.999 - . logic_name=eponine scaffold_5 . biological_region 729886 729887 0.999 + . logic_name=eponine scaffold_5 . biological_region 730217 730223 0.999 + . logic_name=eponine scaffold_5 . biological_region 730316 730320 0.999 - . logic_name=eponine scaffold_5 . repeat_region 731449 731461 . ? . description=dust scaffold_5 . biological_region 732722 732725 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 726418 730414 . + . ID=Physo128705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50202;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 726418 730414 . + . ID=Physo128705;Parent=Physo128705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 726418 730311 . + 0 ID=Physo128705;Parent=Physo128705;rank=1 scaffold_5 . exon 726418 730414 . + . ID=Physo128705.1;Parent=Physo128705;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 731723 732445 . + . ID=Physo128706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50203;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 731723 732445 . + . ID=Physo128706;Parent=Physo128706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 731723 732445 . + 0 ID=Physo128706;Parent=Physo128706;rank=1 scaffold_5 . exon 731723 732445 . + . ID=Physo128706.1;Parent=Physo128706;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 732521 733675 . - . ID=Physo128707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50204;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 732521 733675 . - . ID=Physo128707;Parent=Physo128707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 732521 733675 . - 0 ID=Physo128707;Parent=Physo128707;rank=1 scaffold_5 . exon 732521 733675 . - . ID=Physo128707.1;Parent=Physo128707;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 735318 736351 . + . ID=Physo128709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50206;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 735318 736351 . + . ID=Physo128709;Parent=Physo128709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 735318 736202 . + 0 ID=Physo128709;Parent=Physo128709;rank=1 scaffold_5 . exon 735318 736202 . + . ID=Physo128709.1;Parent=Physo128709;constitutive=1;rank=1 scaffold_5 . CDS 736340 736351 . + 0 ID=Physo128709;Parent=Physo128709;rank=2 scaffold_5 ensembl protein_coding_gene 733934 735124 . + . ID=Physo155531;biotype=protein_coding;external_name=C_scaffold_5000055;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 733934 735124 . + . ID=Physo155531;Parent=Physo155531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 733934 735124 . + 0 ID=Physo155531;Parent=Physo155531;rank=1 scaffold_5 . exon 733934 735124 . + . ID=Physo155531.1;Parent=Physo155531;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 739607 740787 . - . ID=Physo108301;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50016;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 739607 740787 . - . ID=Physo108301;Parent=Physo108301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 739607 740355 . - 0 ID=Physo108301;Parent=Physo108301;rank=3 scaffold_5 . exon 739607 740355 . - . ID=Physo108301.3;Parent=Physo108301;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 740425 740493 . - 0 ID=Physo108301;Parent=Physo108301;rank=2 scaffold_5 . exon 740425 740493 . - . ID=Physo108301.2;Parent=Physo108301;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 740577 740787 . - 0 ID=Physo108301;Parent=Physo108301;rank=1 scaffold_5 . exon 740577 740787 . - . ID=Physo108301.1;Parent=Physo108301;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 743899 746727 . - . ID=Physo108302;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50017;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 743899 746727 . - . ID=Physo108302;Parent=Physo108302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 743899 744430 . - . ID=Physo108302.2;Parent=Physo108302;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_5 . CDS 743986 744430 . - 0 ID=Physo108302;Parent=Physo108302;rank=2 scaffold_5 . CDS 744467 746670 . - 0 ID=Physo108302;Parent=Physo108302;rank=1 scaffold_5 . exon 744467 746727 . - . ID=Physo108302.1;Parent=Physo108302;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_5 . exon 736340 736351 . + . ID=Physo128709.2;Parent=Physo128709;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 736415 738108 . - . ID=Physo128710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50207;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 736415 738108 . - . ID=Physo128710;Parent=Physo128710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 736415 737147 . - . ID=Physo128710.5;Parent=Physo128710;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_5 . CDS 736520 737147 . - 0 ID=Physo128710;Parent=Physo128710;rank=5 scaffold_5 . CDS 737276 737492 . - 0 ID=Physo128710;Parent=Physo128710;rank=4 scaffold_5 . exon 737276 737492 . - . ID=Physo128710.4;Parent=Physo128710;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . CDS 737563 737645 . - 0 ID=Physo128710;Parent=Physo128710;rank=3 scaffold_5 . exon 737563 737645 . - . ID=Physo128710.3;Parent=Physo128710;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 737739 737824 . - 0 ID=Physo128710;Parent=Physo128710;rank=2 scaffold_5 . exon 737739 737824 . - . ID=Physo128710.2;Parent=Physo128710;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 737902 738108 . - 0 ID=Physo128710;Parent=Physo128710;rank=1 scaffold_5 . exon 737902 738108 . - . ID=Physo128710.1;Parent=Physo128710;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 738281 739417 . - . ID=Physo128711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50208;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 738281 739417 . - . ID=Physo128711;Parent=Physo128711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 738281 739417 . - 0 ID=Physo128711;Parent=Physo128711;rank=1 scaffold_5 . exon 738281 739417 . - . ID=Physo128711.1;Parent=Physo128711;constitutive=1;rank=1 scaffold_5 . repeat_region 746672 746707 . ? . description=trf scaffold_5 . repeat_region 746678 746705 . ? . description=dust scaffold_5 . biological_region 747020 747027 0.999 + . logic_name=eponine scaffold_5 . biological_region 747166 747171 0.999 + . logic_name=eponine scaffold_5 . biological_region 747194 747198 0.999 + . logic_name=eponine scaffold_5 . biological_region 747205 747205 0.999 - . logic_name=eponine scaffold_5 . biological_region 747224 747232 0.999 + . logic_name=eponine scaffold_5 . biological_region 747346 747354 0.999 - . logic_name=eponine scaffold_5 . biological_region 747408 747412 0.999 + . logic_name=eponine scaffold_5 . biological_region 747684 747685 0.999 + . logic_name=eponine scaffold_5 . biological_region 749324 749326 0.999 + . logic_name=eponine scaffold_5 . biological_region 751821 751821 0.999 + . logic_name=eponine scaffold_5 . biological_region 751831 751834 0.999 - . logic_name=eponine scaffold_5 . biological_region 751889 751891 0.999 + . logic_name=eponine scaffold_5 . biological_region 751953 751959 0.999 - . logic_name=eponine scaffold_5 . biological_region 752312 752312 0.999 + . logic_name=eponine scaffold_5 . biological_region 754101 754106 0.999 + . logic_name=eponine scaffold_5 . biological_region 754121 754126 0.999 + . logic_name=eponine scaffold_5 . biological_region 754124 754132 0.999 - . logic_name=eponine scaffold_5 . biological_region 754157 754162 0.999 - . logic_name=eponine scaffold_5 . biological_region 754180 754187 0.999 + . logic_name=eponine scaffold_5 . biological_region 754186 754190 0.999 - . logic_name=eponine scaffold_5 . biological_region 754203 754205 0.999 - . logic_name=eponine scaffold_5 . biological_region 754222 754225 0.999 - . logic_name=eponine scaffold_5 . biological_region 754225 754227 0.999 + . logic_name=eponine scaffold_5 . biological_region 754236 754239 0.999 - . logic_name=eponine scaffold_5 . biological_region 754243 754249 0.999 + . logic_name=eponine scaffold_5 . biological_region 754259 754266 0.999 - . logic_name=eponine scaffold_5 . biological_region 754301 754301 0.999 - . logic_name=eponine scaffold_5 . biological_region 755367 755371 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 753960 755459 . + . ID=Physo108303;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50018;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 753960 755459 . + . ID=Physo108303;Parent=Physo108303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 753960 755459 . + 0 ID=Physo108303;Parent=Physo108303;rank=1 scaffold_5 . exon 753960 755459 . + . ID=Physo108303.1;Parent=Physo108303;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 747034 747872 . + . ID=Physo128714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50211;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 747034 747872 . + . ID=Physo128714;Parent=Physo128714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 747034 747872 . + . ID=Physo128714.1;Parent=Physo128714;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 747035 747811 . + 0 ID=Physo128714;Parent=Physo128714;rank=1 scaffold_5 ensembl protein_coding_gene 747871 749148 . - . ID=Physo128715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50212;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 747871 749148 . - . ID=Physo128715;Parent=Physo128715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 747871 748177 . - 0 ID=Physo128715;Parent=Physo128715;rank=4 scaffold_5 . exon 747871 748177 . - . ID=Physo128715.4;Parent=Physo128715;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 748260 748394 . - 0 ID=Physo128715;Parent=Physo128715;rank=3 scaffold_5 . exon 748260 748394 . - . ID=Physo128715.3;Parent=Physo128715;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_5 . CDS 748478 748770 . - 0 ID=Physo128715;Parent=Physo128715;rank=2 scaffold_5 . exon 748478 748770 . - . ID=Physo128715.2;Parent=Physo128715;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 748841 749119 . - 0 ID=Physo128715;Parent=Physo128715;rank=1 scaffold_5 . exon 748841 749148 . - . ID=Physo128715.1;Parent=Physo128715;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 749917 751981 . - . ID=Physo128716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50213;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 749917 751981 . - . ID=Physo128716;Parent=Physo128716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 749917 750060 . - 0 ID=Physo128716;Parent=Physo128716;rank=7 scaffold_5 . exon 749917 750060 . - . ID=Physo128716.7;Parent=Physo128716;constitutive=1;rank=7 scaffold_5 . CDS 750135 750201 . - 0 ID=Physo128716;Parent=Physo128716;rank=6 scaffold_5 . exon 750135 750201 . - . ID=Physo128716.6;Parent=Physo128716;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 750287 750373 . - 0 ID=Physo128716;Parent=Physo128716;rank=5 scaffold_5 . exon 750287 750373 . - . ID=Physo128716.5;Parent=Physo128716;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_5 . CDS 750443 750543 . - 0 ID=Physo128716;Parent=Physo128716;rank=4 scaffold_5 . exon 750443 750543 . - . ID=Physo128716.4;Parent=Physo128716;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . CDS 750566 750575 . - 0 ID=Physo128716;Parent=Physo128716;rank=3 scaffold_5 . exon 750566 750575 . - . ID=Physo128716.3;Parent=Physo128716;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 750741 750855 . - 0 ID=Physo128716;Parent=Physo128716;rank=2 scaffold_5 . exon 750741 750855 . - . ID=Physo128716.2;Parent=Physo128716;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 750997 751981 . - 0 ID=Physo128716;Parent=Physo128716;rank=1 scaffold_5 . exon 750997 751981 . - . ID=Physo128716.1;Parent=Physo128716;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 752334 753719 . - . ID=Physo128717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50214;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 752334 753719 . - . ID=Physo128717;Parent=Physo128717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 752334 753719 . - 0 ID=Physo128717;Parent=Physo128717;rank=1 scaffold_5 . exon 752334 753719 . - . ID=Physo128717.1;Parent=Physo128717;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 755979 760078 . + . ID=Physo128719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50216;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 755979 760078 . + . ID=Physo128719;Parent=Physo128719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 755979 756194 . + 0 ID=Physo128719;Parent=Physo128719;rank=1 scaffold_5 . exon 755979 756194 . + . ID=Physo128719.1;Parent=Physo128719;constitutive=1;rank=1 scaffold_5 . CDS 756263 760078 . + 0 ID=Physo128719;Parent=Physo128719;rank=2 scaffold_5 . exon 756263 760078 . + . ID=Physo128719.2;Parent=Physo128719;constitutive=1;rank=2 scaffold_5 . repeat_region 766195 766204 . ? . description=dust scaffold_5 . biological_region 766239 766242 0.999 + . logic_name=eponine scaffold_5 . biological_region 766274 766277 0.999 + . logic_name=eponine scaffold_5 . biological_region 766281 766284 0.999 + . logic_name=eponine scaffold_5 . biological_region 766654 766657 0.999 - . logic_name=eponine scaffold_5 . repeat_region 766677 766761 . ? . description=trf scaffold_5 . biological_region 766695 766700 0.999 - . logic_name=eponine scaffold_5 . biological_region 766853 766855 0.999 - . logic_name=eponine scaffold_5 . biological_region 771027 771029 0.999 - . logic_name=eponine scaffold_5 . biological_region 771102 771106 0.999 + . logic_name=eponine scaffold_5 . biological_region 771172 771176 0.999 + . logic_name=eponine scaffold_5 . biological_region 771235 771239 0.999 - . logic_name=eponine scaffold_5 . repeat_region 771761 773123 . + . description=GypsyPi-1c_I-int scaffold_5 . biological_region 772235 772238 0.999 + . logic_name=eponine scaffold_5 . repeat_region 773201 779909 . ? . description=dust scaffold_5 ensembl protein_coding_gene 771390 772863 . + . ID=Physo128720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50217;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 771390 772863 . + . ID=Physo128720;Parent=Physo128720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 771390 772164 . + 0 ID=Physo128720;Parent=Physo128720;rank=1 scaffold_5 . exon 771390 772164 . + . ID=Physo128720.1;Parent=Physo128720;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 772209 772787 . + 0 ID=Physo128720;Parent=Physo128720;rank=2 scaffold_5 . exon 772209 772787 . + . ID=Physo128720.2;Parent=Physo128720;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 772850 772863 . + 0 ID=Physo128720;Parent=Physo128720;rank=3 scaffold_5 . exon 772850 772863 . + . ID=Physo128720.3;Parent=Physo128720;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 ensembl protein_coding_gene 781072 781824 . - . ID=Physo128721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50218;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 781072 781824 . - . ID=Physo128721;Parent=Physo128721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 781072 781346 . - 0 ID=Physo128721;Parent=Physo128721;rank=2 scaffold_5 . exon 781072 781346 . - . ID=Physo128721.2;Parent=Physo128721;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 781566 781824 . - 0 ID=Physo128721;Parent=Physo128721;rank=1 scaffold_5 . exon 781566 781824 . - . ID=Physo128721.1;Parent=Physo128721;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . repeat_region 787066 787098 . ? . description=trf scaffold_5 . repeat_region 787207 787214 . ? . description=dust scaffold_5 . biological_region 788831 788835 0.999 + . logic_name=eponine scaffold_5 . biological_region 788913 788918 0.999 + . logic_name=eponine scaffold_5 . biological_region 788927 788930 0.999 - . logic_name=eponine scaffold_5 . biological_region 790422 790424 0.999 + . logic_name=eponine scaffold_5 . biological_region 790447 790458 0.999 + . logic_name=eponine scaffold_5 . repeat_region 790465 790977 . ? . description=trf scaffold_5 . biological_region 790477 790480 0.999 - . logic_name=eponine scaffold_5 . biological_region 790504 790514 0.999 - . logic_name=eponine scaffold_5 . biological_region 790519 790525 0.999 - . logic_name=eponine scaffold_5 . biological_region 790539 790544 0.999 - . logic_name=eponine scaffold_5 . biological_region 790568 790570 0.999 - . logic_name=eponine scaffold_5 . biological_region 790594 790601 0.999 + . logic_name=eponine scaffold_5 . biological_region 790719 790723 0.999 - . logic_name=eponine scaffold_5 . biological_region 790759 790761 0.999 - . logic_name=eponine scaffold_5 . biological_region 790798 790804 0.999 + . logic_name=eponine scaffold_5 . biological_region 791139 791151 0.999 - . logic_name=eponine scaffold_5 . biological_region 791200 791200 0.999 - . logic_name=eponine scaffold_5 . biological_region 791200 791205 0.999 + . logic_name=eponine scaffold_5 . biological_region 791420 791425 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 787401 788323 . + . ID=Physo128722;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50219;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 787401 788323 . + . ID=Physo128722;Parent=Physo128722;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 787401 788096 . + 0 ID=Physo128722;Parent=Physo128722;rank=1 scaffold_5 . exon 787401 788096 . + . ID=Physo128722.1;Parent=Physo128722;constitutive=1;rank=1 scaffold_5 . CDS 788165 788323 . + 0 ID=Physo128722;Parent=Physo128722;rank=2 scaffold_5 . exon 788165 788323 . + . ID=Physo128722.2;Parent=Physo128722;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 788467 789204 . - . ID=Physo128723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50220;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 788467 789204 . - . ID=Physo128723;Parent=Physo128723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 788467 789204 . - 0 ID=Physo128723;Parent=Physo128723;rank=1 scaffold_5 . exon 788467 789204 . - . ID=Physo128723.1;Parent=Physo128723;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 790660 800739 . + . ID=Physo155537;biotype=protein_coding;external_name=C_scaffold_5000061;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 790660 800739 . + . ID=Physo155537;Parent=Physo155537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 790660 791108 . + 0 ID=Physo155537;Parent=Physo155537;rank=1 scaffold_5 . exon 790660 791108 . + . ID=Physo155537.1;Parent=Physo155537;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 791217 794190 . + 0 ID=Physo155537;Parent=Physo155537;rank=2 scaffold_5 . exon 791217 794190 . + . ID=Physo155537.2;Parent=Physo155537;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 794233 795063 . + 0 ID=Physo155537;Parent=Physo155537;rank=3 scaffold_5 . exon 794233 795063 . + . ID=Physo155537.3;Parent=Physo155537;constitutive=1;rank=3 scaffold_5 . CDS 795121 795258 . + 0 ID=Physo155537;Parent=Physo155537;rank=4 scaffold_5 . exon 795121 795258 . + . ID=Physo155537.4;Parent=Physo155537;constitutive=1;rank=4 scaffold_5 . CDS 795304 800739 . + 0 ID=Physo155537;Parent=Physo155537;rank=5 scaffold_5 . exon 795304 800739 . + . ID=Physo155537.5;Parent=Physo155537;constitutive=1;rank=5 scaffold_5 ensembl protein_coding_gene 801001 802567 . - . ID=Physo128725;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50222;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 801001 802567 . - . ID=Physo128725;Parent=Physo128725;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 801001 801025 . - 0 ID=Physo128725;Parent=Physo128725;rank=2 scaffold_5 . exon 801001 801025 . - . ID=Physo128725.2;Parent=Physo128725;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 801054 802567 . - 0 ID=Physo128725;Parent=Physo128725;rank=1 scaffold_5 . exon 801054 802567 . - . ID=Physo128725.1;Parent=Physo128725;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 804122 805230 . + . ID=Physo128726;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50223;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 804122 805230 . + . ID=Physo128726;Parent=Physo128726;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 804122 804159 . + 0 ID=Physo128726;Parent=Physo128726;rank=1 scaffold_5 . exon 804122 804159 . + . ID=Physo128726.1;Parent=Physo128726;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 804238 805132 . + 0 ID=Physo128726;Parent=Physo128726;rank=2 scaffold_5 . exon 804238 805132 . + . ID=Physo128726.2;Parent=Physo128726;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 805222 805230 . + 0 ID=Physo128726;Parent=Physo128726;rank=3 scaffold_5 . exon 805222 805230 . + . ID=Physo128726.3;Parent=Physo128726;constitutive=1;rank=3 scaffold_5 . biological_region 812511 812512 0.999 - . logic_name=eponine scaffold_5 . biological_region 813305 813310 0.999 - . logic_name=eponine scaffold_5 . repeat_region 814548 814580 . ? . description=trf scaffold_5 . repeat_region 814699 814755 . ? . description=dust scaffold_5 . repeat_region 814702 814751 . ? . description=trf scaffold_5 . repeat_region 814705 814755 . ? . description=trf scaffold_5 ensembl protein_coding_gene 812298 816341 . + . ID=Physo108304;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50019;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 812298 816341 . + . ID=Physo108304;Parent=Physo108304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 812298 813517 . + 0 ID=Physo108304;Parent=Physo108304;rank=1 scaffold_5 . exon 812298 813517 . + . ID=Physo108304.1;Parent=Physo108304;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 813557 813679 . + 0 ID=Physo108304;Parent=Physo108304;rank=2 scaffold_5 . exon 813557 813679 . + . ID=Physo108304.2;Parent=Physo108304;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 814309 814339 . + 0 ID=Physo108304;Parent=Physo108304;rank=3 scaffold_5 . exon 814309 814339 . + . ID=Physo108304.3;Parent=Physo108304;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 815174 815176 . + 0 ID=Physo108304;Parent=Physo108304;rank=4 scaffold_5 . exon 815174 815176 . + . ID=Physo108304.4;Parent=Physo108304;constitutive=1;rank=4 scaffold_5 . CDS 815384 815474 . + 0 ID=Physo108304;Parent=Physo108304;rank=5 scaffold_5 . exon 815384 815474 . + . ID=Physo108304.5;Parent=Physo108304;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_5 . CDS 816292 816341 . + 0 ID=Physo108304;Parent=Physo108304;rank=6 scaffold_5 ensembl protein_coding_gene 806230 807930 . - . ID=Physo128727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50224;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 806230 807930 . - . ID=Physo128727;Parent=Physo128727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 806230 807930 . - 0 ID=Physo128727;Parent=Physo128727;rank=1 scaffold_5 . exon 806230 807930 . - . ID=Physo128727.1;Parent=Physo128727;constitutive=1;rank=1 scaffold_5 . exon 816292 816341 . + . ID=Physo108304.6;Parent=Physo108304;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 ensembl protein_coding_gene 819471 820509 . - . ID=Physo108305;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50020;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 819471 820509 . - . ID=Physo108305;Parent=Physo108305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 819471 820509 . - . ID=Physo108305.1;Parent=Physo108305;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 819472 820473 . - 0 ID=Physo108305;Parent=Physo108305;rank=1 scaffold_5 . repeat_region 825954 826003 . ? . description=dust scaffold_5 . biological_region 826339 826344 0.999 - . logic_name=eponine scaffold_5 . biological_region 826346 826347 0.999 + . logic_name=eponine scaffold_5 . biological_region 826394 826397 0.999 + . logic_name=eponine scaffold_5 . repeat_region 826411 826420 . ? . description=dust scaffold_5 . repeat_region 826648 826655 . ? . description=dust scaffold_5 . repeat_region 826811 826844 . ? . description=trf scaffold_5 . repeat_region 831334 831439 . - . description=Gypsy-1-LTR_PI scaffold_5 . repeat_region 831518 831747 . - . description=Gypsy-2-I_PI-int scaffold_5 . biological_region 831841 831845 0.999 - . logic_name=eponine scaffold_5 . repeat_region 832269 838124 . - . description=Gypsy-2-I_PI-int scaffold_5 ensembl protein_coding_gene 831711 833182 . + . ID=Physo128730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50227;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 831711 833182 . + . ID=Physo128730;Parent=Physo128730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 831711 832411 . + 0 ID=Physo128730;Parent=Physo128730;rank=1 scaffold_5 . exon 831711 832411 . + . ID=Physo128730.1;Parent=Physo128730;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 832432 833182 . + 0 ID=Physo128730;Parent=Physo128730;rank=2 scaffold_5 . exon 832432 833182 . + . ID=Physo128730.2;Parent=Physo128730;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 833846 838349 . - . ID=Physo128731;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50228;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 833846 838349 . - . ID=Physo128731;Parent=Physo128731;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 833846 834773 . - 0 ID=Physo128731;Parent=Physo128731;rank=7 scaffold_5 . exon 833846 834773 . - . ID=Physo128731.7;Parent=Physo128731;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . CDS 834836 835396 . - 0 ID=Physo128731;Parent=Physo128731;rank=6 scaffold_5 . exon 834836 835396 . - . ID=Physo128731.6;Parent=Physo128731;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_5 . CDS 835450 836148 . - 0 ID=Physo128731;Parent=Physo128731;rank=5 scaffold_5 . exon 835450 836148 . - . ID=Physo128731.5;Parent=Physo128731;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_5 . CDS 836175 836769 . - 0 ID=Physo128731;Parent=Physo128731;rank=4 scaffold_5 . CDS 836914 837144 . - 0 ID=Physo128731;Parent=Physo128731;rank=3 scaffold_5 . CDS 837273 838101 . - 0 ID=Physo128731;Parent=Physo128731;rank=2 scaffold_5 . CDS 838308 838349 . - 0 ID=Physo128731;Parent=Physo128731;rank=1 scaffold_5 . exon 836175 836769 . - . ID=Physo128731.4;Parent=Physo128731;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . exon 836914 837144 . - . ID=Physo128731.3;Parent=Physo128731;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . exon 837273 838101 . - . ID=Physo128731.2;Parent=Physo128731;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . exon 838308 838349 . - . ID=Physo128731.1;Parent=Physo128731;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 839827 841358 . - . ID=Physo128732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50229;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 839827 841358 . - . ID=Physo128732;Parent=Physo128732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 839827 840048 . - 0 ID=Physo128732;Parent=Physo128732;rank=4 scaffold_5 . exon 839827 840048 . - . ID=Physo128732.4;Parent=Physo128732;constitutive=1;rank=4 scaffold_5 . CDS 840123 840917 . - 0 ID=Physo128732;Parent=Physo128732;rank=3 scaffold_5 . exon 840123 840917 . - . ID=Physo128732.3;Parent=Physo128732;constitutive=1;rank=3 scaffold_5 . CDS 841000 841108 . - 0 ID=Physo128732;Parent=Physo128732;rank=2 scaffold_5 . exon 841000 841108 . - . ID=Physo128732.2;Parent=Physo128732;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 841183 841358 . - 0 ID=Physo128732;Parent=Physo128732;rank=1 scaffold_5 . exon 841183 841358 . - . ID=Physo128732.1;Parent=Physo128732;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 842307 843338 . - . ID=Physo128733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50230;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 842307 843338 . - . ID=Physo128733;Parent=Physo128733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 842307 843338 . - 0 ID=Physo128733;Parent=Physo128733;rank=1 scaffold_5 . exon 842307 843338 . - . ID=Physo128733.1;Parent=Physo128733;constitutive=1;rank=1 scaffold_5 . repeat_region 847218 847270 . ? . description=trf scaffold_5 . repeat_region 851783 851809 . ? . description=trf scaffold_5 . repeat_region 851783 851815 . ? . description=trf scaffold_5 . biological_region 852530 852531 0.999 - . logic_name=eponine scaffold_5 . biological_region 853006 853009 0.999 - . logic_name=eponine scaffold_5 . biological_region 853120 853123 0.999 - . logic_name=eponine scaffold_5 . biological_region 854416 854417 0.999 - . logic_name=eponine scaffold_5 . repeat_region 855540 855560 . ? . description=trf scaffold_5 ensembl protein_coding_gene 847578 848630 . + . ID=Physo128734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50231;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 847578 848630 . + . ID=Physo128734;Parent=Physo128734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 847578 847897 . + 0 ID=Physo128734;Parent=Physo128734;rank=1 scaffold_5 . exon 847578 847897 . + . ID=Physo128734.1;Parent=Physo128734;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 847945 848492 . + 0 ID=Physo128734;Parent=Physo128734;rank=2 scaffold_5 . exon 847945 848492 . + . ID=Physo128734.2;Parent=Physo128734;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 848560 848630 . + 0 ID=Physo128734;Parent=Physo128734;rank=3 scaffold_5 . exon 848560 848630 . + . ID=Physo128734.3;Parent=Physo128734;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 ensembl protein_coding_gene 851310 852597 . + . ID=Physo128735;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50232;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 851310 852597 . + . ID=Physo128735;Parent=Physo128735;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 851310 852597 . + . ID=Physo128735.1;Parent=Physo128735;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 851351 852559 . + 0 ID=Physo128735;Parent=Physo128735;rank=1 scaffold_5 ensembl protein_coding_gene 854253 856049 . + . ID=Physo128736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50233;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 854253 856049 . + . ID=Physo128736;Parent=Physo128736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 854253 856049 . + 0 ID=Physo128736;Parent=Physo128736;rank=1 scaffold_5 . exon 854253 856049 . + . ID=Physo128736.1;Parent=Physo128736;constitutive=1;rank=1 scaffold_5 . repeat_region 858052 858179 . ? . description=dust scaffold_5 . repeat_region 862168 862176 . ? . description=dust scaffold_5 . repeat_region 862764 862867 . ? . description=dust scaffold_5 ensembl protein_coding_gene 865343 869633 . - . ID=Physo108306;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50021;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 865343 869633 . - . ID=Physo108306;Parent=Physo108306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 865343 866736 . - 0 ID=Physo108306;Parent=Physo108306;rank=7 scaffold_5 . exon 865343 866736 . - . ID=Physo108306.7;Parent=Physo108306;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 . CDS 867299 867318 . - 0 ID=Physo108306;Parent=Physo108306;rank=6 scaffold_5 . CDS 867483 867577 . - 0 ID=Physo108306;Parent=Physo108306;rank=5 scaffold_5 . CDS 867638 867685 . - 0 ID=Physo108306;Parent=Physo108306;rank=4 scaffold_5 . CDS 867851 868612 . - 0 ID=Physo108306;Parent=Physo108306;rank=3 scaffold_5 . CDS 868700 868882 . - 0 ID=Physo108306;Parent=Physo108306;rank=2 scaffold_5 . CDS 868920 869633 . - 0 ID=Physo108306;Parent=Physo108306;rank=1 scaffold_5 ensembl protein_coding_gene 857385 858708 . + . ID=Physo128737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50234;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 857385 858708 . + . ID=Physo128737;Parent=Physo128737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 857385 858656 . + 0 ID=Physo128737;Parent=Physo128737;rank=1 scaffold_5 . exon 857385 858708 . + . ID=Physo128737.1;Parent=Physo128737;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 858973 861546 . - . ID=Physo155541;biotype=protein_coding;external_name=C_scaffold_5000065;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 858973 861546 . - . ID=Physo155541;Parent=Physo155541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 858973 859041 . - 0 ID=Physo155541;Parent=Physo155541;rank=5 scaffold_5 . exon 858973 859041 . - . ID=Physo155541.5;Parent=Physo155541;constitutive=1;rank=5 scaffold_5 . CDS 859111 859630 . - 0 ID=Physo155541;Parent=Physo155541;rank=4 scaffold_5 . exon 859111 859630 . - . ID=Physo155541.4;Parent=Physo155541;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 859706 859948 . - 0 ID=Physo155541;Parent=Physo155541;rank=3 scaffold_5 . exon 859706 859948 . - . ID=Physo155541.3;Parent=Physo155541;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_5 . CDS 860279 861062 . - 0 ID=Physo155541;Parent=Physo155541;rank=2 scaffold_5 . exon 860279 861062 . - . ID=Physo155541.2;Parent=Physo155541;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 861198 861546 . - 0 ID=Physo155541;Parent=Physo155541;rank=1 scaffold_5 . exon 861198 861546 . - . ID=Physo155541.1;Parent=Physo155541;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . biological_region 869816 869818 0.999 + . logic_name=eponine scaffold_5 . repeat_region 869864 869913 . ? . description=trf scaffold_5 . biological_region 870033 870036 0.999 + . logic_name=eponine scaffold_5 . biological_region 870090 870097 0.999 - . logic_name=eponine scaffold_5 . biological_region 870166 870169 0.999 - . logic_name=eponine scaffold_5 . biological_region 870199 870201 0.999 - . logic_name=eponine scaffold_5 . biological_region 870253 870256 0.999 + . logic_name=eponine scaffold_5 . biological_region 871697 871700 0.999 - . logic_name=eponine scaffold_5 . repeat_region 872504 872583 . ? . description=trf scaffold_5 . repeat_region 872964 873070 . ? . description=trf scaffold_5 . biological_region 873242 873246 0.999 + . logic_name=eponine scaffold_5 . exon 867299 867318 . - . ID=Physo108306.6;Parent=Physo108306;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_5 . exon 867483 867577 . - . ID=Physo108306.5;Parent=Physo108306;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . exon 867638 867685 . - . ID=Physo108306.4;Parent=Physo108306;constitutive=1;rank=4 scaffold_5 . exon 867851 868612 . - . ID=Physo108306.3;Parent=Physo108306;constitutive=1;rank=3 scaffold_5 . exon 868700 868882 . - . ID=Physo108306.2;Parent=Physo108306;constitutive=1;rank=2 scaffold_5 . exon 868920 869633 . - . ID=Physo108306.1;Parent=Physo108306;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 873678 876671 . - . ID=Physo111275;biotype=protein_coding;external_name=estExt_Genewise1.C_50121;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 873678 876671 . - . ID=Physo111275;Parent=Physo111275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 873678 873987 . - . ID=Physo111275.4;Parent=Physo111275;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_5 . CDS 873871 873987 . - 0 ID=Physo111275;Parent=Physo111275;rank=4 scaffold_5 . CDS 874052 874438 . - 0 ID=Physo111275;Parent=Physo111275;rank=3 scaffold_5 . exon 874052 874438 . - . ID=Physo111275.3;Parent=Physo111275;constitutive=1;rank=3 scaffold_5 . CDS 875105 875341 . - 0 ID=Physo111275;Parent=Physo111275;rank=2 scaffold_5 . exon 875105 875341 . - . ID=Physo111275.2;Parent=Physo111275;constitutive=1;rank=2 scaffold_5 . CDS 876282 876440 . - 0 ID=Physo111275;Parent=Physo111275;rank=1 scaffold_5 . repeat_region 877394 877457 . ? . description=dust scaffold_5 . repeat_region 880053 881250 . ? . description=dust scaffold_5 . repeat_region 881251 881603 . ? . description=dust scaffold_5 . exon 876282 876671 . - . ID=Physo111275.1;Parent=Physo111275;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 878876 879528 . - . ID=Physo111276;biotype=protein_coding;external_name=estExt_Genewise1.C_50122;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 878876 879528 . - . ID=Physo111276;Parent=Physo111276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 878876 879528 . - . ID=Physo111276.1;Parent=Physo111276;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 879136 879465 . - 0 ID=Physo111276;Parent=Physo111276;rank=1 scaffold_5 . biological_region 885955 885961 0.999 + . logic_name=eponine scaffold_5 . repeat_region 886087 886118 . ? . description=trf scaffold_5 . biological_region 886100 886104 0.999 - . logic_name=eponine scaffold_5 . biological_region 886123 886126 0.999 - . logic_name=eponine scaffold_5 . biological_region 886155 886157 0.999 - . logic_name=eponine scaffold_5 . biological_region 886298 886301 0.999 - . logic_name=eponine scaffold_5 . biological_region 886500 886508 0.999 - . logic_name=eponine scaffold_5 . biological_region 886728 886731 0.999 - . logic_name=eponine scaffold_5 . biological_region 886736 886741 0.999 + . logic_name=eponine scaffold_5 . biological_region 886797 886803 0.999 - . logic_name=eponine scaffold_5 . biological_region 886865 886870 0.999 - . logic_name=eponine scaffold_5 . biological_region 892851 892854 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 886025 888453 . + . ID=Physo128740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50237;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 886025 888453 . + . ID=Physo128740;Parent=Physo128740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 886025 886259 . + 0 ID=Physo128740;Parent=Physo128740;rank=1 scaffold_5 . exon 886025 886259 . + . ID=Physo128740.1;Parent=Physo128740;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 886348 888233 . + 0 ID=Physo128740;Parent=Physo128740;rank=2 scaffold_5 . exon 886348 888453 . + . ID=Physo128740.2;Parent=Physo128740;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 891019 892454 . + . ID=Physo128741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50238;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 891019 892454 . + . ID=Physo128741;Parent=Physo128741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 891019 891021 . + 0 ID=Physo128741;Parent=Physo128741;rank=1 scaffold_5 . exon 891019 891021 . + . ID=Physo128741.1;Parent=Physo128741;constitutive=1;rank=1 scaffold_5 . CDS 891087 891423 . + 0 ID=Physo128741;Parent=Physo128741;rank=2 scaffold_5 . exon 891087 891423 . + . ID=Physo128741.2;Parent=Physo128741;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 891571 892454 . + 0 ID=Physo128741;Parent=Physo128741;rank=3 scaffold_5 . exon 891571 892454 . + . ID=Physo128741.3;Parent=Physo128741;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 ensembl protein_coding_gene 896287 904249 . - . ID=Physo128742;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50239;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 896287 904249 . - . ID=Physo128742;Parent=Physo128742;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 896287 898727 . - 0 ID=Physo128742;Parent=Physo128742;rank=6 scaffold_5 . exon 896287 898727 . - . ID=Physo128742.6;Parent=Physo128742;constitutive=1;ensembl_phase=1;rank=6 scaffold_5 . CDS 898947 899343 . - 0 ID=Physo128742;Parent=Physo128742;rank=5 scaffold_5 . exon 898947 899343 . - . ID=Physo128742.5;Parent=Physo128742;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_5 . CDS 899638 903672 . - 0 ID=Physo128742;Parent=Physo128742;rank=4 scaffold_5 . exon 899638 903672 . - . ID=Physo128742.4;Parent=Physo128742;constitutive=1;rank=4 scaffold_5 . CDS 903736 903791 . - 0 ID=Physo128742;Parent=Physo128742;rank=3 scaffold_5 . exon 903736 903791 . - . ID=Physo128742.3;Parent=Physo128742;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 903872 904102 . - 0 ID=Physo128742;Parent=Physo128742;rank=2 scaffold_5 . exon 903872 904102 . - . ID=Physo128742.2;Parent=Physo128742;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 904168 904249 . - 0 ID=Physo128742;Parent=Physo128742;rank=1 scaffold_5 . exon 904168 904249 . - . ID=Physo128742.1;Parent=Physo128742;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . biological_region 906113 906117 0.999 - . logic_name=eponine scaffold_5 . biological_region 908776 908779 0.999 + . logic_name=eponine scaffold_5 . biological_region 908827 908829 0.999 + . logic_name=eponine scaffold_5 . biological_region 909137 909143 0.999 - . logic_name=eponine scaffold_5 . biological_region 910047 910047 0.999 - . logic_name=eponine scaffold_5 . biological_region 910136 910143 0.999 + . logic_name=eponine scaffold_5 . repeat_region 910941 910962 . ? . description=dust scaffold_5 . biological_region 911521 911523 0.999 - . logic_name=eponine scaffold_5 . biological_region 911904 911907 0.999 + . logic_name=eponine scaffold_5 . biological_region 912304 912307 0.999 - . logic_name=eponine scaffold_5 . repeat_region 914416 914426 . ? . description=dust scaffold_5 . repeat_region 914986 915058 . ? . description=dust scaffold_5 ensembl protein_coding_gene 905452 909506 . + . ID=Physo128743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50240;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 905452 909506 . + . ID=Physo128743;Parent=Physo128743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 905452 906826 . + 0 ID=Physo128743;Parent=Physo128743;rank=1 scaffold_5 . exon 905452 906826 . + . ID=Physo128743.1;Parent=Physo128743;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 906884 906947 . + 0 ID=Physo128743;Parent=Physo128743;rank=2 scaffold_5 . exon 906884 906947 . + . ID=Physo128743.2;Parent=Physo128743;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 907023 907983 . + 0 ID=Physo128743;Parent=Physo128743;rank=3 scaffold_5 . exon 907023 907983 . + . ID=Physo128743.3;Parent=Physo128743;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 908182 908200 . + 0 ID=Physo128743;Parent=Physo128743;rank=4 scaffold_5 . exon 908182 908200 . + . ID=Physo128743.4;Parent=Physo128743;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 908287 908401 . + 0 ID=Physo128743;Parent=Physo128743;rank=5 scaffold_5 . exon 908287 908401 . + . ID=Physo128743.5;Parent=Physo128743;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_5 . CDS 908471 909506 . + 0 ID=Physo128743;Parent=Physo128743;rank=6 scaffold_5 . exon 908471 909506 . + . ID=Physo128743.6;Parent=Physo128743;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 ensembl protein_coding_gene 909935 910996 . + . ID=Physo128744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50241;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 909935 910996 . + . ID=Physo128744;Parent=Physo128744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 909935 910996 . + 0 ID=Physo128744;Parent=Physo128744;rank=1 scaffold_5 . exon 909935 910996 . + . ID=Physo128744.1;Parent=Physo128744;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 911802 913471 . + . ID=Physo128745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50242;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 911802 913471 . + . ID=Physo128745;Parent=Physo128745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 911802 912890 . + 0 ID=Physo128745;Parent=Physo128745;rank=1 scaffold_5 . exon 911802 912890 . + . ID=Physo128745.1;Parent=Physo128745;constitutive=1;rank=1 scaffold_5 . CDS 913028 913099 . + 0 ID=Physo128745;Parent=Physo128745;rank=2 scaffold_5 . exon 913028 913099 . + . ID=Physo128745.2;Parent=Physo128745;constitutive=1;rank=2 scaffold_5 . CDS 913223 913471 . + 0 ID=Physo128745;Parent=Physo128745;rank=3 scaffold_5 . exon 913223 913471 . + . ID=Physo128745.3;Parent=Physo128745;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 916939 919298 . - . ID=Physo128746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50243;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 916939 919298 . - . ID=Physo128746;Parent=Physo128746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 916939 917155 . - 0 ID=Physo128746;Parent=Physo128746;rank=4 scaffold_5 . exon 916939 917155 . - . ID=Physo128746.4;Parent=Physo128746;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 917481 918281 . - 0 ID=Physo128746;Parent=Physo128746;rank=3 scaffold_5 . exon 917481 918281 . - . ID=Physo128746.3;Parent=Physo128746;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_5 . CDS 918328 918806 . - 0 ID=Physo128746;Parent=Physo128746;rank=2 scaffold_5 . exon 918328 918806 . - . ID=Physo128746.2;Parent=Physo128746;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 918894 919298 . - 0 ID=Physo128746;Parent=Physo128746;rank=1 scaffold_5 . exon 918894 919298 . - . ID=Physo128746.1;Parent=Physo128746;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 919407 920783 . - . ID=Physo128747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50244;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 919407 920783 . - . ID=Physo128747;Parent=Physo128747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 919407 920783 . - 0 ID=Physo128747;Parent=Physo128747;rank=1 scaffold_5 . exon 919407 920783 . - . ID=Physo128747.1;Parent=Physo128747;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 921925 923157 . - . ID=Physo128748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50245;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 921925 923157 . - . ID=Physo128748;Parent=Physo128748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 921925 923157 . - 0 ID=Physo128748;Parent=Physo128748;rank=1 scaffold_5 . exon 921925 923157 . - . ID=Physo128748.1;Parent=Physo128748;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 923786 925076 . - . ID=Physo128749;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50246;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 923786 925076 . - . ID=Physo128749;Parent=Physo128749;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 923786 924688 . - 0 ID=Physo128749;Parent=Physo128749;rank=2 scaffold_5 . exon 923786 924688 . - . ID=Physo128749.2;Parent=Physo128749;constitutive=1;rank=2 scaffold_5 . CDS 924720 925076 . - 0 ID=Physo128749;Parent=Physo128749;rank=1 scaffold_5 . exon 924720 925076 . - . ID=Physo128749.1;Parent=Physo128749;constitutive=1;rank=1 scaffold_5 . repeat_region 927284 927321 . ? . description=trf scaffold_5 . biological_region 928260 928264 0.999 + . logic_name=eponine scaffold_5 . biological_region 928396 928400 0.999 - . logic_name=eponine scaffold_5 . biological_region 931400 931401 0.999 + . logic_name=eponine scaffold_5 . biological_region 932798 932798 0.999 + . logic_name=eponine scaffold_5 . biological_region 932928 932931 0.999 - . logic_name=eponine scaffold_5 . biological_region 934254 934254 0.999 + . logic_name=eponine scaffold_5 . biological_region 934963 934965 0.999 - . logic_name=eponine scaffold_5 . repeat_region 935006 935068 . ? . description=trf scaffold_5 . biological_region 935080 935086 0.999 - . logic_name=eponine scaffold_5 . biological_region 935120 935127 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 925537 926739 . - . ID=Physo128750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50247;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 925537 926739 . - . ID=Physo128750;Parent=Physo128750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 925537 926739 . - 0 ID=Physo128750;Parent=Physo128750;rank=1 scaffold_5 . exon 925537 926739 . - . ID=Physo128750.1;Parent=Physo128750;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 927614 928792 . - . ID=Physo128751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50248;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 927614 928792 . - . ID=Physo128751;Parent=Physo128751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 927614 928792 . - 0 ID=Physo128751;Parent=Physo128751;rank=1 scaffold_5 . exon 927614 928792 . - . ID=Physo128751.1;Parent=Physo128751;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 929843 934639 . + . ID=Physo128752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50249;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 929843 934639 . + . ID=Physo128752;Parent=Physo128752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 929843 930469 . + 0 ID=Physo128752;Parent=Physo128752;rank=1 scaffold_5 . exon 929843 930469 . + . ID=Physo128752.1;Parent=Physo128752;constitutive=1;rank=1 scaffold_5 . CDS 930491 931092 . + 0 ID=Physo128752;Parent=Physo128752;rank=2 scaffold_5 . exon 930491 931092 . + . ID=Physo128752.2;Parent=Physo128752;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 931173 932223 . + 0 ID=Physo128752;Parent=Physo128752;rank=3 scaffold_5 . exon 931173 932223 . + . ID=Physo128752.3;Parent=Physo128752;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 932448 932535 . + 0 ID=Physo128752;Parent=Physo128752;rank=4 scaffold_5 . exon 932448 932535 . + . ID=Physo128752.4;Parent=Physo128752;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 932615 932735 . + 0 ID=Physo128752;Parent=Physo128752;rank=5 scaffold_5 . exon 932615 932735 . + . ID=Physo128752.5;Parent=Physo128752;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_5 . CDS 932872 933211 . + 0 ID=Physo128752;Parent=Physo128752;rank=6 scaffold_5 . exon 932872 933211 . + . ID=Physo128752.6;Parent=Physo128752;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 933367 933386 . + 0 ID=Physo128752;Parent=Physo128752;rank=7 scaffold_5 . exon 933367 933386 . + . ID=Physo128752.7;Parent=Physo128752;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_5 . CDS 933490 934639 . + 0 ID=Physo128752;Parent=Physo128752;rank=8 scaffold_5 . exon 933490 934639 . + . ID=Physo128752.8;Parent=Physo128752;constitutive=1;ensembl_phase=2;rank=8 scaffold_5 ensembl protein_coding_gene 937547 938919 . + . ID=Physo128754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50251;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 937547 938919 . + . ID=Physo128754;Parent=Physo128754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 937547 937804 . + . ID=Physo128754.1;Parent=Physo128754;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_5 . CDS 937572 937804 . + 0 ID=Physo128754;Parent=Physo128754;rank=1 scaffold_5 . CDS 937893 938607 . + 0 ID=Physo128754;Parent=Physo128754;rank=2 scaffold_5 . exon 937893 938607 . + . ID=Physo128754.2;Parent=Physo128754;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 938690 938767 . + 0 ID=Physo128754;Parent=Physo128754;rank=3 scaffold_5 . exon 938690 938919 . + . ID=Physo128754.3;Parent=Physo128754;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_5 ensembl protein_coding_gene 940351 943161 . + . ID=Physo128756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50253;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 940351 943161 . + . ID=Physo128756;Parent=Physo128756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 940351 940716 . + 0 ID=Physo128756;Parent=Physo128756;rank=1 scaffold_5 . exon 940351 940716 . + . ID=Physo128756.1;Parent=Physo128756;constitutive=1;rank=1 scaffold_5 . CDS 940882 943161 . + 0 ID=Physo128756;Parent=Physo128756;rank=2 scaffold_5 . exon 940882 943161 . + . ID=Physo128756.2;Parent=Physo128756;constitutive=1;rank=2 scaffold_5 ensembl protein_coding_gene 943296 944116 . - . ID=Physo128757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50254;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 943296 944116 . - . ID=Physo128757;Parent=Physo128757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 943296 944020 . - 0 ID=Physo128757;Parent=Physo128757;rank=2 scaffold_5 . exon 943296 944020 . - . ID=Physo128757.2;Parent=Physo128757;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 944107 944116 . - 0 ID=Physo128757;Parent=Physo128757;rank=1 scaffold_5 . exon 944107 944116 . - . ID=Physo128757.1;Parent=Physo128757;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 935671 937222 . + . ID=Physo155543;biotype=protein_coding;external_name=C_scaffold_5000067;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 935671 937222 . + . ID=Physo155543;Parent=Physo155543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 935671 936217 . + 0 ID=Physo155543;Parent=Physo155543;rank=1 scaffold_5 . exon 935671 936217 . + . ID=Physo155543.1;Parent=Physo155543;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 936318 937222 . + 0 ID=Physo155543;Parent=Physo155543;rank=2 scaffold_5 . exon 936318 937222 . + . ID=Physo155543.2;Parent=Physo155543;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 938962 940177 . - . ID=Physo155545;biotype=protein_coding;external_name=C_scaffold_5000069;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 938962 940177 . - . ID=Physo155545;Parent=Physo155545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 938962 939566 . - 0 ID=Physo155545;Parent=Physo155545;rank=4 scaffold_5 . exon 938962 939566 . - . ID=Physo155545.4;Parent=Physo155545;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 939591 939688 . - 0 ID=Physo155545;Parent=Physo155545;rank=3 scaffold_5 . exon 939591 939688 . - . ID=Physo155545.3;Parent=Physo155545;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 939763 939912 . - 0 ID=Physo155545;Parent=Physo155545;rank=2 scaffold_5 . exon 939763 939912 . - . ID=Physo155545.2;Parent=Physo155545;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 940008 940177 . - 0 ID=Physo155545;Parent=Physo155545;rank=1 scaffold_5 . exon 940008 940177 . - . ID=Physo155545.1;Parent=Physo155545;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . biological_region 945573 945576 0.999 - . logic_name=eponine scaffold_5 . repeat_region 947492 947499 . ? . description=dust scaffold_5 . biological_region 948317 948319 0.999 - . logic_name=eponine scaffold_5 . biological_region 949678 949680 0.999 - . logic_name=eponine scaffold_5 . repeat_region 950539 950568 . ? . description=trf scaffold_5 . repeat_region 950598 950743 . ? . description=trf scaffold_5 . biological_region 950966 950972 0.999 + . logic_name=eponine scaffold_5 . biological_region 951040 951040 0.999 - . logic_name=eponine scaffold_5 . biological_region 951042 951047 0.999 + . logic_name=eponine scaffold_5 . biological_region 951051 951052 0.999 + . logic_name=eponine scaffold_5 . biological_region 951103 951111 0.999 - . logic_name=eponine scaffold_5 . biological_region 951172 951174 0.999 - . logic_name=eponine scaffold_5 . biological_region 951219 951223 0.999 - . logic_name=eponine scaffold_5 . biological_region 951874 951879 0.999 + . logic_name=eponine scaffold_5 . biological_region 951967 951968 0.999 - . logic_name=eponine scaffold_5 . biological_region 952211 952213 0.999 + . logic_name=eponine scaffold_5 . biological_region 953572 953577 0.999 - . logic_name=eponine scaffold_5 . biological_region 953593 953596 0.999 - . logic_name=eponine scaffold_5 . biological_region 953628 953632 0.999 + . logic_name=eponine scaffold_5 . biological_region 953739 953743 0.999 - . logic_name=eponine scaffold_5 . biological_region 953795 953799 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 945448 946890 . - . ID=Physo128759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50256;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 945448 946890 . - . ID=Physo128759;Parent=Physo128759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 945448 945627 . - 0 ID=Physo128759;Parent=Physo128759;rank=6 scaffold_5 . exon 945448 945627 . - . ID=Physo128759.6;Parent=Physo128759;constitutive=1;rank=6 scaffold_5 . CDS 945696 945881 . - 0 ID=Physo128759;Parent=Physo128759;rank=5 scaffold_5 . exon 945696 945881 . - . ID=Physo128759.5;Parent=Physo128759;constitutive=1;rank=5 scaffold_5 . CDS 945958 946233 . - 0 ID=Physo128759;Parent=Physo128759;rank=4 scaffold_5 . exon 945958 946233 . - . ID=Physo128759.4;Parent=Physo128759;constitutive=1;rank=4 scaffold_5 . CDS 946302 946516 . - 0 ID=Physo128759;Parent=Physo128759;rank=3 scaffold_5 . exon 946302 946516 . - . ID=Physo128759.3;Parent=Physo128759;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 946538 946583 . - 0 ID=Physo128759;Parent=Physo128759;rank=2 scaffold_5 . exon 946538 946583 . - . ID=Physo128759.2;Parent=Physo128759;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 946654 946890 . - 0 ID=Physo128759;Parent=Physo128759;rank=1 scaffold_5 . exon 946654 946890 . - . ID=Physo128759.1;Parent=Physo128759;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 947501 948427 . - . ID=Physo128760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50257;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 947501 948427 . - . ID=Physo128760;Parent=Physo128760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 947501 948427 . - 0 ID=Physo128760;Parent=Physo128760;rank=1 scaffold_5 . exon 947501 948427 . - . ID=Physo128760.1;Parent=Physo128760;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 949381 951717 . - . ID=Physo128761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50258;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 949381 951717 . - . ID=Physo128761;Parent=Physo128761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 949381 951717 . - . ID=Physo128761.1;Parent=Physo128761;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . CDS 949492 951717 . - 0 ID=Physo128761;Parent=Physo128761;rank=1 scaffold_5 ensembl protein_coding_gene 952737 954780 . + . ID=Physo155547;biotype=protein_coding;external_name=C_scaffold_5000071;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 952737 954780 . + . ID=Physo155547;Parent=Physo155547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 952737 953689 . + 0 ID=Physo155547;Parent=Physo155547;rank=1 scaffold_5 . exon 952737 953689 . + . ID=Physo155547.1;Parent=Physo155547;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 953756 953869 . + 0 ID=Physo155547;Parent=Physo155547;rank=2 scaffold_5 . exon 953756 953869 . + . ID=Physo155547.2;Parent=Physo155547;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 954045 954175 . + 0 ID=Physo155547;Parent=Physo155547;rank=3 scaffold_5 . exon 954045 954175 . + . ID=Physo155547.3;Parent=Physo155547;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 954209 954470 . + 0 ID=Physo155547;Parent=Physo155547;rank=4 scaffold_5 . exon 954209 954470 . + . ID=Physo155547.4;Parent=Physo155547;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . CDS 954555 954780 . + 0 ID=Physo155547;Parent=Physo155547;rank=5 scaffold_5 . exon 954555 954780 . + . ID=Physo155547.5;Parent=Physo155547;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 ensembl protein_coding_gene 964441 967013 . + . ID=Physo128766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50263;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 964441 967013 . + . ID=Physo128766;Parent=Physo128766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 964441 965019 . + 0 ID=Physo128766;Parent=Physo128766;rank=1 scaffold_5 . exon 964441 965019 . + . ID=Physo128766.1;Parent=Physo128766;constitutive=1;rank=1 scaffold_5 . CDS 965072 965284 . + 0 ID=Physo128766;Parent=Physo128766;rank=2 scaffold_5 . exon 965072 965284 . + . ID=Physo128766.2;Parent=Physo128766;constitutive=1;rank=2 scaffold_5 . CDS 965394 967013 . + 0 ID=Physo128766;Parent=Physo128766;rank=3 scaffold_5 ensembl protein_coding_gene 956350 960027 . - . ID=Physo155549;biotype=protein_coding;external_name=C_scaffold_5000073;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 956350 960027 . - . ID=Physo155549;Parent=Physo155549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 956350 956352 . - 0 ID=Physo155549;Parent=Physo155549;rank=9 scaffold_5 . exon 956350 956352 . - . ID=Physo155549.9;Parent=Physo155549;constitutive=1;rank=9 scaffold_5 . CDS 956430 957089 . - 0 ID=Physo155549;Parent=Physo155549;rank=8 scaffold_5 . exon 956430 957089 . - . ID=Physo155549.8;Parent=Physo155549;constitutive=1;rank=8 scaffold_5 . CDS 957150 957271 . - 0 ID=Physo155549;Parent=Physo155549;rank=7 scaffold_5 . exon 957150 957271 . - . ID=Physo155549.7;Parent=Physo155549;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 . CDS 957815 958781 . - 0 ID=Physo155549;Parent=Physo155549;rank=6 scaffold_5 . exon 957815 958781 . - . ID=Physo155549.6;Parent=Physo155549;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_5 . CDS 958852 959034 . - 0 ID=Physo155549;Parent=Physo155549;rank=5 scaffold_5 . exon 958852 959034 . - . ID=Physo155549.5;Parent=Physo155549;constitutive=1;rank=5 scaffold_5 . CDS 959123 959191 . - 0 ID=Physo155549;Parent=Physo155549;rank=4 scaffold_5 . exon 959123 959191 . - . ID=Physo155549.4;Parent=Physo155549;constitutive=1;rank=4 scaffold_5 . CDS 959350 959733 . - 0 ID=Physo155549;Parent=Physo155549;rank=3 scaffold_5 . exon 959350 959733 . - . ID=Physo155549.3;Parent=Physo155549;constitutive=1;rank=3 scaffold_5 . CDS 959796 959848 . - 0 ID=Physo155549;Parent=Physo155549;rank=2 scaffold_5 . exon 959796 959848 . - . ID=Physo155549.2;Parent=Physo155549;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 959931 960027 . - 0 ID=Physo155549;Parent=Physo155549;rank=1 scaffold_5 . exon 959931 960027 . - . ID=Physo155549.1;Parent=Physo155549;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 960141 961990 . + . ID=Physo155550;biotype=protein_coding;external_name=C_scaffold_5000074;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 960141 961990 . + . ID=Physo155550;Parent=Physo155550;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 960141 960258 . + 0 ID=Physo155550;Parent=Physo155550;rank=1 scaffold_5 . exon 960141 960258 . + . ID=Physo155550.1;Parent=Physo155550;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 960373 961010 . + 0 ID=Physo155550;Parent=Physo155550;rank=2 scaffold_5 . exon 960373 961010 . + . ID=Physo155550.2;Parent=Physo155550;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 961173 961305 . + 0 ID=Physo155550;Parent=Physo155550;rank=3 scaffold_5 . exon 961173 961305 . + . ID=Physo155550.3;Parent=Physo155550;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 961417 961990 . + 0 ID=Physo155550;Parent=Physo155550;rank=4 scaffold_5 . exon 961417 961990 . + . ID=Physo155550.4;Parent=Physo155550;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . biological_region 966750 966753 0.999 + . logic_name=eponine scaffold_5 . repeat_region 967290 967312 . ? . description=dust scaffold_5 . biological_region 967704 967709 0.999 + . logic_name=eponine scaffold_5 . repeat_region 968271 968284 . ? . description=dust scaffold_5 . biological_region 968832 968835 0.999 + . logic_name=eponine scaffold_5 . biological_region 968853 968856 0.999 + . logic_name=eponine scaffold_5 . biological_region 968858 968860 0.999 - . logic_name=eponine scaffold_5 . repeat_region 968888 968930 . ? . description=dust scaffold_5 . repeat_region 968899 968930 . ? . description=trf scaffold_5 . biological_region 968907 968917 0.999 + . logic_name=eponine scaffold_5 . repeat_region 969408 969452 . ? . description=dust scaffold_5 . repeat_region 969408 969452 . ? . description=trf scaffold_5 . biological_region 969426 969426 0.999 + . logic_name=eponine scaffold_5 . repeat_region 970976 971025 . ? . description=trf scaffold_5 . repeat_region 970976 971028 . ? . description=dust scaffold_5 . repeat_region 970982 971028 . ? . description=trf scaffold_5 . biological_region 972427 972430 0.999 + . logic_name=eponine scaffold_5 . biological_region 972495 972495 0.999 - . logic_name=eponine scaffold_5 . biological_region 972983 972987 0.999 - . logic_name=eponine scaffold_5 . biological_region 973075 973079 0.999 + . logic_name=eponine scaffold_5 . biological_region 973167 973170 0.999 + . logic_name=eponine scaffold_5 . repeat_region 973931 973950 . ? . description=trf scaffold_5 . biological_region 974075 974076 0.999 + . logic_name=eponine scaffold_5 . biological_region 974155 974155 0.999 - . logic_name=eponine scaffold_5 . biological_region 974179 974184 0.999 - . logic_name=eponine scaffold_5 . biological_region 974413 974417 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 971058 973202 . - . ID=Physo108308;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50023;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 971058 973202 . - . ID=Physo108308;Parent=Physo108308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 971058 972056 . - . ID=Physo108308.6;Parent=Physo108308;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_5 . CDS 971178 972056 . - 0 ID=Physo108308;Parent=Physo108308;rank=6 scaffold_5 . CDS 972134 972202 . - 0 ID=Physo108308;Parent=Physo108308;rank=5 scaffold_5 . exon 972134 972202 . - . ID=Physo108308.5;Parent=Physo108308;constitutive=1;rank=5 scaffold_5 . CDS 972279 972701 . - 0 ID=Physo108308;Parent=Physo108308;rank=4 scaffold_5 . exon 972279 972701 . - . ID=Physo108308.4;Parent=Physo108308;constitutive=1;rank=4 scaffold_5 . CDS 972777 972824 . - 0 ID=Physo108308;Parent=Physo108308;rank=3 scaffold_5 . exon 972777 972824 . - . ID=Physo108308.3;Parent=Physo108308;constitutive=1;rank=3 scaffold_5 . CDS 972954 973028 . - 0 ID=Physo108308;Parent=Physo108308;rank=2 scaffold_5 . exon 972954 973028 . - . ID=Physo108308.2;Parent=Physo108308;constitutive=1;rank=2 scaffold_5 . CDS 973103 973171 . - 0 ID=Physo108308;Parent=Physo108308;rank=1 scaffold_5 . exon 973103 973202 . - . ID=Physo108308.1;Parent=Physo108308;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 967819 968527 . - . ID=Physo111303;biotype=protein_coding;external_name=estExt_Genewise1.C_50149;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 967819 968527 . - . ID=Physo111303;Parent=Physo111303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 967819 968055 . - 0 ID=Physo111303;Parent=Physo111303;rank=2 scaffold_5 . exon 967819 968055 . - . ID=Physo111303.2;Parent=Physo111303;constitutive=1;rank=2 scaffold_5 . CDS 968447 968449 . - 0 ID=Physo111303;Parent=Physo111303;rank=1 scaffold_5 . exon 968447 968527 . - . ID=Physo111303.1;Parent=Physo111303;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . exon 965394 967013 . + . ID=Physo128766.3;Parent=Physo128766;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 968756 971044 . + . ID=Physo128767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50264;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 968756 971044 . + . ID=Physo128767;Parent=Physo128767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 968756 969256 . + 0 ID=Physo128767;Parent=Physo128767;rank=1 scaffold_5 . exon 968756 969256 . + . ID=Physo128767.1;Parent=Physo128767;constitutive=1;rank=1 scaffold_5 . CDS 969340 969489 . + 0 ID=Physo128767;Parent=Physo128767;rank=2 scaffold_5 . exon 969340 969489 . + . ID=Physo128767.2;Parent=Physo128767;constitutive=1;rank=2 scaffold_5 . CDS 969570 969890 . + 0 ID=Physo128767;Parent=Physo128767;rank=3 scaffold_5 . exon 969570 969890 . + . ID=Physo128767.3;Parent=Physo128767;constitutive=1;rank=3 scaffold_5 . CDS 970116 970218 . + 0 ID=Physo128767;Parent=Physo128767;rank=4 scaffold_5 . exon 970116 970218 . + . ID=Physo128767.4;Parent=Physo128767;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 970347 971044 . + 0 ID=Physo128767;Parent=Physo128767;rank=5 scaffold_5 . exon 970347 971044 . + . ID=Physo128767.5;Parent=Physo128767;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 ensembl protein_coding_gene 973900 976167 . + . ID=Physo128769;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50266;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 973900 976167 . + . ID=Physo128769;Parent=Physo128769;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 973900 976167 . + 0 ID=Physo128769;Parent=Physo128769;rank=1 scaffold_5 . exon 973900 976167 . + . ID=Physo128769.1;Parent=Physo128769;constitutive=1;rank=1 scaffold_5 . repeat_region 976007 976153 . + . description=(ATG)n scaffold_5 ensembl protein_coding_gene 976498 978246 . - . ID=Physo128770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50267;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 976498 978246 . - . ID=Physo128770;Parent=Physo128770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 976498 978246 . - 0 ID=Physo128770;Parent=Physo128770;rank=1 scaffold_5 . exon 976498 978246 . - . ID=Physo128770.1;Parent=Physo128770;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 979327 983193 . - . ID=Physo128771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50268;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 979327 983193 . - . ID=Physo128771;Parent=Physo128771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 979327 981087 . - 0 ID=Physo128771;Parent=Physo128771;rank=2 scaffold_5 . exon 979327 981087 . - . ID=Physo128771.2;Parent=Physo128771;constitutive=1;rank=2 scaffold_5 . CDS 981691 983193 . - 0 ID=Physo128771;Parent=Physo128771;rank=1 scaffold_5 . exon 981691 983193 . - . ID=Physo128771.1;Parent=Physo128771;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 983620 987747 . + . ID=Physo128772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50269;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 983620 987747 . + . ID=Physo128772;Parent=Physo128772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 983620 987747 . + 0 ID=Physo128772;Parent=Physo128772;rank=1 scaffold_5 . exon 983620 987747 . + . ID=Physo128772.1;Parent=Physo128772;constitutive=1;rank=1 scaffold_5 . repeat_region 988886 988900 . ? . description=dust scaffold_5 . biological_region 989783 989787 0.999 + . logic_name=eponine scaffold_5 . biological_region 990229 990231 0.999 + . logic_name=eponine scaffold_5 . repeat_region 990243 990297 . ? . description=dust scaffold_5 . repeat_region 990251 990288 . ? . description=trf scaffold_5 . biological_region 990353 990356 0.999 - . logic_name=eponine scaffold_5 . biological_region 990505 990509 0.999 - . logic_name=eponine scaffold_5 . biological_region 990600 990604 0.999 - . logic_name=eponine scaffold_5 . biological_region 990871 990874 0.999 - . logic_name=eponine scaffold_5 . repeat_region 991159 991166 . ? . description=dust scaffold_5 . repeat_region 991263 991291 . ? . description=trf scaffold_5 . biological_region 993965 993967 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 987835 988512 . - . ID=Physo128773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50270;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 987835 988512 . - . ID=Physo128773;Parent=Physo128773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 987835 988512 . - 0 ID=Physo128773;Parent=Physo128773;rank=1 scaffold_5 . exon 987835 988512 . - . ID=Physo128773.1;Parent=Physo128773;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 990147 991044 . + . ID=Physo128774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50271;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 990147 991044 . + . ID=Physo128774;Parent=Physo128774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 990147 990977 . + 0 ID=Physo128774;Parent=Physo128774;rank=1 scaffold_5 . exon 990147 991044 . + . ID=Physo128774.1;Parent=Physo128774;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 991533 994357 . - . ID=Physo128775;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50272;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 991533 994357 . - . ID=Physo128775;Parent=Physo128775;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 991533 991667 . - 0 ID=Physo128775;Parent=Physo128775;rank=7 scaffold_5 . exon 991533 991667 . - . ID=Physo128775.7;Parent=Physo128775;constitutive=1;rank=7 scaffold_5 . CDS 991752 991908 . - 0 ID=Physo128775;Parent=Physo128775;rank=6 scaffold_5 . exon 991752 991908 . - . ID=Physo128775.6;Parent=Physo128775;constitutive=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 991996 992216 . - 0 ID=Physo128775;Parent=Physo128775;rank=5 scaffold_5 . exon 991996 992216 . - . ID=Physo128775.5;Parent=Physo128775;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . CDS 992532 992618 . - 0 ID=Physo128775;Parent=Physo128775;rank=4 scaffold_5 . exon 992532 992618 . - . ID=Physo128775.4;Parent=Physo128775;constitutive=1;rank=4 scaffold_5 . CDS 992688 993023 . - 0 ID=Physo128775;Parent=Physo128775;rank=3 scaffold_5 . exon 992688 993023 . - . ID=Physo128775.3;Parent=Physo128775;constitutive=1;rank=3 scaffold_5 . CDS 993096 994196 . - 0 ID=Physo128775;Parent=Physo128775;rank=2 scaffold_5 . exon 993096 994196 . - . ID=Physo128775.2;Parent=Physo128775;constitutive=1;rank=2 scaffold_5 . CDS 994307 994357 . - 0 ID=Physo128775;Parent=Physo128775;rank=1 scaffold_5 . exon 994307 994357 . - . ID=Physo128775.1;Parent=Physo128775;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 995163 996725 . - . ID=Physo128776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50273;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 995163 996725 . - . ID=Physo128776;Parent=Physo128776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 995163 996157 . - 0 ID=Physo128776;Parent=Physo128776;rank=2 scaffold_5 . exon 995163 996157 . - . ID=Physo128776.2;Parent=Physo128776;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 996323 996725 . - 0 ID=Physo128776;Parent=Physo128776;rank=1 scaffold_5 . exon 996323 996725 . - . ID=Physo128776.1;Parent=Physo128776;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 997591 998188 . + . ID=Physo128777;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50274;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 997591 998188 . + . ID=Physo128777;Parent=Physo128777;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 997591 997644 . + 0 ID=Physo128777;Parent=Physo128777;rank=1 scaffold_5 . exon 997591 997644 . + . ID=Physo128777.1;Parent=Physo128777;constitutive=1;rank=1 scaffold_5 . CDS 997664 997802 . + 0 ID=Physo128777;Parent=Physo128777;rank=2 scaffold_5 . exon 997664 997802 . + . ID=Physo128777.2;Parent=Physo128777;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 997827 998188 . + 0 ID=Physo128777;Parent=Physo128777;rank=3 scaffold_5 . exon 997827 998188 . + . ID=Physo128777.3;Parent=Physo128777;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 ensembl protein_coding_gene 1001435 1002727 . - . ID=Physo128778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50275;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1001435 1002727 . - . ID=Physo128778;Parent=Physo128778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1001435 1001740 . - 0 ID=Physo128778;Parent=Physo128778;rank=3 scaffold_5 . exon 1001435 1001740 . - . ID=Physo128778.3;Parent=Physo128778;constitutive=1;rank=3 scaffold_5 . CDS 1001815 1002308 . - 0 ID=Physo128778;Parent=Physo128778;rank=2 scaffold_5 . exon 1001815 1002308 . - . ID=Physo128778.2;Parent=Physo128778;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 1002424 1002727 . - 0 ID=Physo128778;Parent=Physo128778;rank=1 scaffold_5 . exon 1002424 1002727 . - . ID=Physo128778.1;Parent=Physo128778;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 1003235 1004472 . + . ID=Physo128779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50276;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1003235 1004472 . + . ID=Physo128779;Parent=Physo128779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1003235 1003680 . + 0 ID=Physo128779;Parent=Physo128779;rank=1 scaffold_5 . exon 1003235 1003680 . + . ID=Physo128779.1;Parent=Physo128779;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1003775 1003907 . + 0 ID=Physo128779;Parent=Physo128779;rank=2 scaffold_5 . exon 1003775 1003907 . + . ID=Physo128779.2;Parent=Physo128779;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1003972 1004472 . + 0 ID=Physo128779;Parent=Physo128779;rank=3 scaffold_5 . exon 1003972 1004472 . + . ID=Physo128779.3;Parent=Physo128779;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 1004522 1006740 . - . ID=Physo128780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50277;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1004522 1006740 . - . ID=Physo128780;Parent=Physo128780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1004522 1006740 . - . ID=Physo128780.1;Parent=Physo128780;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 1004601 1006739 . - 0 ID=Physo128780;Parent=Physo128780;rank=1 scaffold_5 . biological_region 1005997 1006000 0.999 + . logic_name=eponine scaffold_5 . biological_region 1008271 1008274 0.999 + . logic_name=eponine scaffold_5 . biological_region 1009714 1009715 0.999 - . logic_name=eponine scaffold_5 . biological_region 1010342 1010344 0.999 + . logic_name=eponine scaffold_5 . repeat_region 1012358 1012381 . ? . description=trf scaffold_5 . biological_region 1012604 1012608 0.999 + . logic_name=eponine scaffold_5 . biological_region 1012633 1012634 0.999 + . logic_name=eponine scaffold_5 . biological_region 1012873 1012879 0.999 - . logic_name=eponine scaffold_5 . biological_region 1012890 1012893 0.999 - . logic_name=eponine scaffold_5 . biological_region 1012896 1012898 0.999 + . logic_name=eponine scaffold_5 . biological_region 1012946 1012948 0.999 - . logic_name=eponine scaffold_5 . repeat_region 1013290 1013297 . ? . description=dust scaffold_5 . biological_region 1013684 1013684 0.999 + . logic_name=eponine scaffold_5 . biological_region 1013718 1013728 0.999 + . logic_name=eponine scaffold_5 . biological_region 1013801 1013802 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 1007682 1009209 . - . ID=Physo128781;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50278;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1007682 1009209 . - . ID=Physo128781;Parent=Physo128781;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1007682 1009013 . - 0 ID=Physo128781;Parent=Physo128781;rank=1 scaffold_5 . exon 1007682 1009209 . - . ID=Physo128781.1;Parent=Physo128781;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 1010080 1011256 . + . ID=Physo128782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50279;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1010080 1011256 . + . ID=Physo128782;Parent=Physo128782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1010080 1011154 . + 0 ID=Physo128782;Parent=Physo128782;rank=1 scaffold_5 . exon 1010080 1011154 . + . ID=Physo128782.1;Parent=Physo128782;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 1011229 1011254 . + 0 ID=Physo128782;Parent=Physo128782;rank=2 scaffold_5 . exon 1011229 1011256 . + . ID=Physo128782.2;Parent=Physo128782;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 1011556 1013161 . - . ID=Physo128783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50280;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1011556 1013161 . - . ID=Physo128783;Parent=Physo128783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1011556 1011889 . - 0 ID=Physo128783;Parent=Physo128783;rank=2 scaffold_5 . exon 1011556 1011889 . - . ID=Physo128783.2;Parent=Physo128783;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1011975 1013161 . - 0 ID=Physo128783;Parent=Physo128783;rank=1 scaffold_5 . exon 1011975 1013161 . - . ID=Physo128783.1;Parent=Physo128783;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 1013377 1014411 . - . ID=Physo128784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50281;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1013377 1014411 . - . ID=Physo128784;Parent=Physo128784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1013377 1014411 . - 0 ID=Physo128784;Parent=Physo128784;rank=1 scaffold_5 . exon 1013377 1014411 . - . ID=Physo128784.1;Parent=Physo128784;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1021982 1023847 . - . ID=Physo128785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50282;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1021982 1023847 . - . ID=Physo128785;Parent=Physo128785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1021982 1022199 . - 0 ID=Physo128785;Parent=Physo128785;rank=3 scaffold_5 . exon 1021982 1022199 . - . ID=Physo128785.3;Parent=Physo128785;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 1022434 1023455 . - 0 ID=Physo128785;Parent=Physo128785;rank=2 scaffold_5 . exon 1022434 1023455 . - . ID=Physo128785.2;Parent=Physo128785;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1023804 1023847 . - 0 ID=Physo128785;Parent=Physo128785;rank=1 scaffold_5 . exon 1023804 1023847 . - . ID=Physo128785.1;Parent=Physo128785;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . repeat_region 1025935 1025955 . ? . description=dust scaffold_5 . biological_region 1026936 1026940 0.999 + . logic_name=eponine scaffold_5 . biological_region 1027192 1027195 0.999 + . logic_name=eponine scaffold_5 . biological_region 1027877 1027878 0.999 + . logic_name=eponine scaffold_5 . biological_region 1028998 1028998 0.999 - . logic_name=eponine scaffold_5 . biological_region 1029151 1029155 0.999 - . logic_name=eponine scaffold_5 . biological_region 1029816 1029816 0.999 + . logic_name=eponine scaffold_5 . repeat_region 1030909 1030939 . ? . description=trf scaffold_5 . biological_region 1032806 1032811 0.999 - . logic_name=eponine scaffold_5 . repeat_region 1032822 1032877 . ? . description=trf scaffold_5 . biological_region 1032828 1032836 0.999 - . logic_name=eponine scaffold_5 . biological_region 1032854 1032855 0.999 - . logic_name=eponine scaffold_5 . biological_region 1033102 1033112 0.999 + . logic_name=eponine scaffold_5 . biological_region 1033264 1033269 0.999 + . logic_name=eponine scaffold_5 . biological_region 1033294 1033296 0.999 - . logic_name=eponine scaffold_5 . biological_region 1033320 1033324 0.999 - . logic_name=eponine scaffold_5 . biological_region 1033356 1033359 0.999 + . logic_name=eponine scaffold_5 . biological_region 1033375 1033385 0.999 + . logic_name=eponine scaffold_5 . biological_region 1033398 1033403 0.999 + . logic_name=eponine scaffold_5 . biological_region 1033439 1033440 0.999 - . logic_name=eponine scaffold_5 . biological_region 1033874 1033878 0.999 - . logic_name=eponine scaffold_5 . biological_region 1034723 1034724 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 1026289 1027401 . - . ID=Physo128786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50283;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1026289 1027401 . - . ID=Physo128786;Parent=Physo128786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1026289 1027401 . - 0 ID=Physo128786;Parent=Physo128786;rank=1 scaffold_5 . exon 1026289 1027401 . - . ID=Physo128786.1;Parent=Physo128786;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1027718 1028796 . - . ID=Physo128787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50284;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1027718 1028796 . - . ID=Physo128787;Parent=Physo128787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1027718 1028521 . - . ID=Physo128787.2;Parent=Physo128787;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_5 . CDS 1027845 1028521 . - 0 ID=Physo128787;Parent=Physo128787;rank=2 scaffold_5 . CDS 1028613 1028796 . - 0 ID=Physo128787;Parent=Physo128787;rank=1 scaffold_5 . exon 1028613 1028796 . - . ID=Physo128787.1;Parent=Physo128787;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 1029524 1030574 . - . ID=Physo128788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50285;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1029524 1030574 . - . ID=Physo128788;Parent=Physo128788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1029524 1030186 . - . ID=Physo128788.3;Parent=Physo128788;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_5 . CDS 1029533 1030186 . - 0 ID=Physo128788;Parent=Physo128788;rank=3 scaffold_5 . CDS 1030278 1030481 . - 0 ID=Physo128788;Parent=Physo128788;rank=2 scaffold_5 . exon 1030278 1030481 . - . ID=Physo128788.2;Parent=Physo128788;constitutive=1;rank=2 scaffold_5 . CDS 1030512 1030574 . - 0 ID=Physo128788;Parent=Physo128788;rank=1 scaffold_5 . exon 1030512 1030574 . - . ID=Physo128788.1;Parent=Physo128788;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1031038 1033567 . - . ID=Physo128789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50286;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1031038 1033567 . - . ID=Physo128789;Parent=Physo128789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1031038 1031132 . - 0 ID=Physo128789;Parent=Physo128789;rank=2 scaffold_5 . exon 1031038 1031132 . - . ID=Physo128789.2;Parent=Physo128789;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 1031215 1033567 . - 0 ID=Physo128789;Parent=Physo128789;rank=1 scaffold_5 . exon 1031215 1033567 . - . ID=Physo128789.1;Parent=Physo128789;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 1035293 1038423 . + . ID=Physo128790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50287;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1035293 1038423 . + . ID=Physo128790;Parent=Physo128790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1035293 1038334 . + 0 ID=Physo128790;Parent=Physo128790;rank=1 scaffold_5 . exon 1035293 1038423 . + . ID=Physo128790.1;Parent=Physo128790;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 1039509 1040168 . - . ID=Physo128791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50288;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1039509 1040168 . - . ID=Physo128791;Parent=Physo128791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1039509 1040168 . - . ID=Physo128791.1;Parent=Physo128791;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 1039557 1040045 . - 0 ID=Physo128791;Parent=Physo128791;rank=1 scaffold_5 . biological_region 1045304 1045304 0.999 - . logic_name=eponine scaffold_5 . repeat_region 1046958 1047343 . - . description=GypsyPi-1c_I-int scaffold_5 . repeat_region 1050204 1050261 . ? . description=trf scaffold_5 . repeat_region 1050206 1050261 . ? . description=dust scaffold_5 . biological_region 1050310 1050313 0.999 - . logic_name=eponine scaffold_5 . biological_region 1051113 1051113 0.999 + . logic_name=eponine scaffold_5 . biological_region 1051260 1051264 0.999 - . logic_name=eponine scaffold_5 . biological_region 1051767 1051769 0.999 + . logic_name=eponine scaffold_5 . biological_region 1051838 1051839 0.999 + . logic_name=eponine scaffold_5 . repeat_region 1051932 1051955 . ? . description=trf scaffold_5 . repeat_region 1052742 1052924 . + . description=GypsyPi-1c_LTR scaffold_5 . repeat_region 1052925 1057500 . + . description=GypsyPi-1c_I-int scaffold_5 . biological_region 1053169 1053170 0.999 + . logic_name=eponine scaffold_5 . repeat_region 1054679 1054844 . ? . description=trf scaffold_5 ensembl protein_coding_gene 1046233 1051142 . - . ID=Physo128792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50289;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1046233 1051142 . - . ID=Physo128792;Parent=Physo128792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1046233 1046805 . - 0 ID=Physo128792;Parent=Physo128792;rank=5 scaffold_5 . exon 1046233 1046805 . - . ID=Physo128792.5;Parent=Physo128792;constitutive=1;rank=5 scaffold_5 . CDS 1047092 1048050 . - 0 ID=Physo128792;Parent=Physo128792;rank=4 scaffold_5 . exon 1047092 1048050 . - . ID=Physo128792.4;Parent=Physo128792;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 1048147 1049455 . - 0 ID=Physo128792;Parent=Physo128792;rank=3 scaffold_5 . exon 1048147 1049455 . - . ID=Physo128792.3;Parent=Physo128792;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 1049491 1049552 . - 0 ID=Physo128792;Parent=Physo128792;rank=2 scaffold_5 . exon 1049491 1049552 . - . ID=Physo128792.2;Parent=Physo128792;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 1049972 1051142 . - 0 ID=Physo128792;Parent=Physo128792;rank=1 scaffold_5 . exon 1049972 1051142 . - . ID=Physo128792.1;Parent=Physo128792;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 1053012 1057850 . + . ID=Physo128793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50290;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1053012 1057850 . + . ID=Physo128793;Parent=Physo128793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1053012 1053949 . + 0 ID=Physo128793;Parent=Physo128793;rank=1 scaffold_5 . exon 1053012 1053949 . + . ID=Physo128793.1;Parent=Physo128793;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1054045 1054597 . + 0 ID=Physo128793;Parent=Physo128793;rank=2 scaffold_5 . exon 1054045 1054597 . + . ID=Physo128793.2;Parent=Physo128793;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1054640 1054910 . + 0 ID=Physo128793;Parent=Physo128793;rank=3 scaffold_5 . exon 1054640 1054910 . + . ID=Physo128793.3;Parent=Physo128793;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 1055000 1056197 . + 0 ID=Physo128793;Parent=Physo128793;rank=4 scaffold_5 . CDS 1056229 1056792 . + 0 ID=Physo128793;Parent=Physo128793;rank=5 scaffold_5 . CDS 1056952 1057133 . + 0 ID=Physo128793;Parent=Physo128793;rank=6 scaffold_5 . CDS 1057327 1057850 . + 0 ID=Physo128793;Parent=Physo128793;rank=7 scaffold_5 . exon 1055000 1056197 . + . ID=Physo128793.4;Parent=Physo128793;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_5 . exon 1056229 1056792 . + . ID=Physo128793.5;Parent=Physo128793;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_5 . exon 1056952 1057133 . + . ID=Physo128793.6;Parent=Physo128793;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_5 . exon 1057327 1057850 . + . ID=Physo128793.7;Parent=Physo128793;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 ensembl protein_coding_gene 1058103 1060192 . - . ID=Physo128794;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50291;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1058103 1060192 . - . ID=Physo128794;Parent=Physo128794;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1058103 1058837 . - 0 ID=Physo128794;Parent=Physo128794;rank=2 scaffold_5 . exon 1058103 1058837 . - . ID=Physo128794.2;Parent=Physo128794;constitutive=1;rank=2 scaffold_5 . CDS 1058903 1060192 . - 0 ID=Physo128794;Parent=Physo128794;rank=1 scaffold_5 . exon 1058903 1060192 . - . ID=Physo128794.1;Parent=Physo128794;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1062042 1062701 . + . ID=Physo128795;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50292;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1062042 1062701 . + . ID=Physo128795;Parent=Physo128795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1062042 1062701 . + . ID=Physo128795.1;Parent=Physo128795;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 1062165 1062653 . + 0 ID=Physo128795;Parent=Physo128795;rank=1 scaffold_5 ensembl protein_coding_gene 1063606 1066032 . - . ID=Physo128796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50293;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1063606 1066032 . - . ID=Physo128796;Parent=Physo128796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1063606 1066032 . - 0 ID=Physo128796;Parent=Physo128796;rank=1 scaffold_5 . exon 1063606 1066032 . - . ID=Physo128796.1;Parent=Physo128796;constitutive=1;rank=1 scaffold_5 . biological_region 1065367 1065374 0.999 - . logic_name=eponine scaffold_5 . biological_region 1065424 1065425 0.999 + . logic_name=eponine scaffold_5 . biological_region 1065791 1065802 0.999 + . logic_name=eponine scaffold_5 . biological_region 1066220 1066225 0.999 + . logic_name=eponine scaffold_5 . biological_region 1066278 1066281 0.999 - . logic_name=eponine scaffold_5 . biological_region 1066293 1066299 0.999 - . logic_name=eponine scaffold_5 . biological_region 1066550 1066551 0.999 + . logic_name=eponine scaffold_5 . biological_region 1066558 1066564 0.999 + . logic_name=eponine scaffold_5 . biological_region 1066623 1066627 0.999 - . logic_name=eponine scaffold_5 . biological_region 1066624 1066628 0.999 + . logic_name=eponine scaffold_5 . biological_region 1066678 1066679 0.999 + . logic_name=eponine scaffold_5 . biological_region 1068283 1068284 0.999 - . logic_name=eponine scaffold_5 . biological_region 1068364 1068370 0.999 - . logic_name=eponine scaffold_5 . biological_region 1068385 1068386 0.999 - . logic_name=eponine scaffold_5 . repeat_region 1068470 1068479 . ? . description=dust scaffold_5 . repeat_region 1068495 1068502 . ? . description=dust scaffold_5 . biological_region 1068510 1068516 0.999 + . logic_name=eponine scaffold_5 . biological_region 1069090 1069096 0.999 + . logic_name=eponine scaffold_5 . repeat_region 1069099 1069310 . ? . description=trf scaffold_5 . biological_region 1069303 1069304 0.999 - . logic_name=eponine scaffold_5 . repeat_region 1071597 1071711 . + . description=(TCG)n scaffold_5 . repeat_region 1071635 1071685 . ? . description=trf scaffold_5 . biological_region 1071918 1071920 0.999 + . logic_name=eponine scaffold_5 . biological_region 1072351 1072353 0.999 - . logic_name=eponine scaffold_5 . biological_region 1072404 1072410 0.999 + . logic_name=eponine scaffold_5 . biological_region 1072610 1072612 0.999 + . logic_name=eponine scaffold_5 . biological_region 1072709 1072710 0.999 + . logic_name=eponine scaffold_5 . repeat_region 1073921 1073957 . ? . description=trf scaffold_5 ensembl protein_coding_gene 1066474 1068396 . - . ID=Physo128797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50294;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1066474 1068396 . - . ID=Physo128797;Parent=Physo128797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1066474 1068396 . - 0 ID=Physo128797;Parent=Physo128797;rank=1 scaffold_5 . exon 1066474 1068396 . - . ID=Physo128797.1;Parent=Physo128797;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1069755 1070198 . - . ID=Physo128798;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50295;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1069755 1070198 . - . ID=Physo128798;Parent=Physo128798;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1069755 1070198 . - 0 ID=Physo128798;Parent=Physo128798;rank=1 scaffold_5 . exon 1069755 1070198 . - . ID=Physo128798.1;Parent=Physo128798;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1070487 1071188 . + . ID=Physo128799;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50296;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1070487 1071188 . + . ID=Physo128799;Parent=Physo128799;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1070487 1070592 . + 0 ID=Physo128799;Parent=Physo128799;rank=1 scaffold_5 . exon 1070487 1070592 . + . ID=Physo128799.1;Parent=Physo128799;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 1070663 1070910 . + 0 ID=Physo128799;Parent=Physo128799;rank=2 scaffold_5 . exon 1070663 1070910 . + . ID=Physo128799.2;Parent=Physo128799;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 1071015 1071188 . + 0 ID=Physo128799;Parent=Physo128799;rank=3 scaffold_5 . exon 1071015 1071188 . + . ID=Physo128799.3;Parent=Physo128799;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 1071377 1072810 . - . ID=Physo128800;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50297;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1071377 1072810 . - . ID=Physo128800;Parent=Physo128800;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1071377 1072810 . - 0 ID=Physo128800;Parent=Physo128800;rank=1 scaffold_5 . exon 1071377 1072810 . - . ID=Physo128800.1;Parent=Physo128800;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1074108 1075814 . - . ID=Physo128801;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50298;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1074108 1075814 . - . ID=Physo128801;Parent=Physo128801;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1074108 1074269 . - 0 ID=Physo128801;Parent=Physo128801;rank=8 scaffold_5 . exon 1074108 1074269 . - . ID=Physo128801.8;Parent=Physo128801;constitutive=1;rank=8 scaffold_5 . CDS 1074343 1074493 . - 0 ID=Physo128801;Parent=Physo128801;rank=7 scaffold_5 . exon 1074343 1074493 . - . ID=Physo128801.7;Parent=Physo128801;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . CDS 1074557 1074714 . - 0 ID=Physo128801;Parent=Physo128801;rank=6 scaffold_5 . exon 1074557 1074714 . - . ID=Physo128801.6;Parent=Physo128801;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_5 . CDS 1074785 1074865 . - 0 ID=Physo128801;Parent=Physo128801;rank=5 scaffold_5 . CDS 1074951 1075040 . - 0 ID=Physo128801;Parent=Physo128801;rank=4 scaffold_5 . CDS 1075110 1075169 . - 0 ID=Physo128801;Parent=Physo128801;rank=3 scaffold_5 . CDS 1075268 1075579 . - 0 ID=Physo128801;Parent=Physo128801;rank=2 scaffold_5 . CDS 1075722 1075814 . - 0 ID=Physo128801;Parent=Physo128801;rank=1 scaffold_5 ensembl protein_coding_gene 1080228 1084304 . + . ID=Physo111337;biotype=protein_coding;external_name=estExt_Genewise1.C_50183;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1080228 1084304 . + . ID=Physo111337;Parent=Physo111337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1080228 1080311 . + . ID=Physo111337.1;Parent=Physo111337;constitutive=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 1080279 1080311 . + 0 ID=Physo111337;Parent=Physo111337;rank=1 scaffold_5 . CDS 1080378 1082874 . + 0 ID=Physo111337;Parent=Physo111337;rank=2 scaffold_5 . exon 1080378 1082874 . + . ID=Physo111337.2;Parent=Physo111337;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 1083289 1084046 . + 0 ID=Physo111337;Parent=Physo111337;rank=3 scaffold_5 . exon 1083289 1084046 . + . ID=Physo111337.3;Parent=Physo111337;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 1084115 1084162 . + 0 ID=Physo111337;Parent=Physo111337;rank=4 scaffold_5 . exon 1084115 1084162 . + . ID=Physo111337.4;Parent=Physo111337;constitutive=1;rank=4 scaffold_5 . CDS 1084242 1084304 . + 0 ID=Physo111337;Parent=Physo111337;rank=5 scaffold_5 . exon 1084242 1084304 . + . ID=Physo111337.5;Parent=Physo111337;constitutive=1;rank=5 scaffold_5 . exon 1074785 1074865 . - . ID=Physo128801.5;Parent=Physo128801;constitutive=1;rank=5 scaffold_5 . exon 1074951 1075040 . - . ID=Physo128801.4;Parent=Physo128801;constitutive=1;rank=4 scaffold_5 . exon 1075110 1075169 . - . ID=Physo128801.3;Parent=Physo128801;constitutive=1;rank=3 scaffold_5 . exon 1075268 1075579 . - . ID=Physo128801.2;Parent=Physo128801;constitutive=1;rank=2 scaffold_5 . exon 1075722 1075814 . - . ID=Physo128801.1;Parent=Physo128801;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1076174 1077420 . + . ID=Physo128802;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50299;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1076174 1077420 . + . ID=Physo128802;Parent=Physo128802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1076174 1076180 . + 0 ID=Physo128802;Parent=Physo128802;rank=1 scaffold_5 . exon 1076174 1076180 . + . ID=Physo128802.1;Parent=Physo128802;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 1076204 1077420 . + 0 ID=Physo128802;Parent=Physo128802;rank=2 scaffold_5 . exon 1076204 1077420 . + . ID=Physo128802.2;Parent=Physo128802;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 ensembl protein_coding_gene 1077639 1079566 . - . ID=Physo128803;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50300;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1077639 1079566 . - . ID=Physo128803;Parent=Physo128803;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1077639 1077891 . - 0 ID=Physo128803;Parent=Physo128803;rank=4 scaffold_5 . exon 1077639 1077891 . - . ID=Physo128803.4;Parent=Physo128803;constitutive=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 1077964 1079072 . - 0 ID=Physo128803;Parent=Physo128803;rank=3 scaffold_5 . exon 1077964 1079072 . - . ID=Physo128803.3;Parent=Physo128803;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_5 . CDS 1079148 1079353 . - 0 ID=Physo128803;Parent=Physo128803;rank=2 scaffold_5 . exon 1079148 1079353 . - . ID=Physo128803.2;Parent=Physo128803;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 1079434 1079566 . - 0 ID=Physo128803;Parent=Physo128803;rank=1 scaffold_5 . exon 1079434 1079566 . - . ID=Physo128803.1;Parent=Physo128803;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 1084550 1087207 . - . ID=Physo128805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50302;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1084550 1087207 . - . ID=Physo128805;Parent=Physo128805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1084550 1087207 . - . ID=Physo128805.1;Parent=Physo128805;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 . CDS 1084568 1087207 . - 0 ID=Physo128805;Parent=Physo128805;rank=1 scaffold_5 . biological_region 1085868 1085871 0.999 + . logic_name=eponine scaffold_5 . biological_region 1086584 1086589 0.999 + . logic_name=eponine scaffold_5 . biological_region 1086661 1086664 0.999 - . logic_name=eponine scaffold_5 . biological_region 1086707 1086713 0.999 - . logic_name=eponine scaffold_5 . biological_region 1086712 1086716 0.999 + . logic_name=eponine scaffold_5 . biological_region 1086764 1086767 0.999 + . logic_name=eponine scaffold_5 . biological_region 1086767 1086770 0.999 - . logic_name=eponine scaffold_5 . biological_region 1087179 1087182 0.999 - . logic_name=eponine scaffold_5 . biological_region 1087198 1087203 0.999 - . logic_name=eponine scaffold_5 . biological_region 1087542 1087542 0.999 - . logic_name=eponine scaffold_5 . biological_region 1094309 1094309 0.999 + . logic_name=eponine scaffold_5 . biological_region 1094351 1094351 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 1088300 1092903 . + . ID=Physo128806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50303;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1088300 1092903 . + . ID=Physo128806;Parent=Physo128806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1088300 1088367 . + 0 ID=Physo128806;Parent=Physo128806;rank=1 scaffold_5 . exon 1088300 1088367 . + . ID=Physo128806.1;Parent=Physo128806;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1088420 1089200 . + 0 ID=Physo128806;Parent=Physo128806;rank=2 scaffold_5 . exon 1088420 1089200 . + . ID=Physo128806.2;Parent=Physo128806;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1089275 1089311 . + 0 ID=Physo128806;Parent=Physo128806;rank=3 scaffold_5 . exon 1089275 1089311 . + . ID=Physo128806.3;Parent=Physo128806;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 1089429 1090094 . + 0 ID=Physo128806;Parent=Physo128806;rank=4 scaffold_5 . exon 1089429 1090094 . + . ID=Physo128806.4;Parent=Physo128806;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 1090116 1090786 . + 0 ID=Physo128806;Parent=Physo128806;rank=5 scaffold_5 . exon 1090116 1090786 . + . ID=Physo128806.5;Parent=Physo128806;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 1091187 1091302 . + 0 ID=Physo128806;Parent=Physo128806;rank=6 scaffold_5 . exon 1091187 1091302 . + . ID=Physo128806.6;Parent=Physo128806;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_5 . CDS 1091855 1092656 . + 0 ID=Physo128806;Parent=Physo128806;rank=7 scaffold_5 . exon 1091855 1092656 . + . ID=Physo128806.7;Parent=Physo128806;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . CDS 1092901 1092903 . + 0 ID=Physo128806;Parent=Physo128806;rank=8 scaffold_5 . exon 1092901 1092903 . + . ID=Physo128806.8;Parent=Physo128806;constitutive=1;rank=8 scaffold_5 ensembl protein_coding_gene 1093306 1094430 . - . ID=Physo128807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50304;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1093306 1094430 . - . ID=Physo128807;Parent=Physo128807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1093306 1093448 . - . ID=Physo128807.4;Parent=Physo128807;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_5 . CDS 1093350 1093448 . - 0 ID=Physo128807;Parent=Physo128807;rank=4 scaffold_5 . CDS 1093523 1093666 . - 0 ID=Physo128807;Parent=Physo128807;rank=3 scaffold_5 . exon 1093523 1093666 . - . ID=Physo128807.3;Parent=Physo128807;constitutive=1;rank=3 scaffold_5 . CDS 1093752 1094183 . - 0 ID=Physo128807;Parent=Physo128807;rank=2 scaffold_5 . exon 1093752 1094183 . - . ID=Physo128807.2;Parent=Physo128807;constitutive=1;rank=2 scaffold_5 . CDS 1094254 1094430 . - 0 ID=Physo128807;Parent=Physo128807;rank=1 scaffold_5 . exon 1094254 1094430 . - . ID=Physo128807.1;Parent=Physo128807;constitutive=1;rank=1 scaffold_5 . repeat_region 1101491 1101528 . ? . description=trf scaffold_5 . repeat_region 1101497 1101528 . ? . description=trf scaffold_5 . repeat_region 1101503 1101528 . ? . description=trf scaffold_5 . repeat_region 1101794 1101834 . ? . description=trf scaffold_5 . repeat_region 1102911 1102953 . ? . description=trf scaffold_5 . repeat_region 1103533 1103545 . ? . description=dust scaffold_5 . repeat_region 1103599 1103630 . ? . description=dust scaffold_5 . repeat_region 1103599 1103636 . ? . description=trf scaffold_5 ensembl protein_coding_gene 1095429 1097794 . + . ID=Physo128808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50305;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1095429 1097794 . + . ID=Physo128808;Parent=Physo128808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1095429 1097794 . + . ID=Physo128808.1;Parent=Physo128808;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 1096740 1097552 . + 0 ID=Physo128808;Parent=Physo128808;rank=1 scaffold_5 ensembl protein_coding_gene 1097984 1098877 . + . ID=Physo128809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50306;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1097984 1098877 . + . ID=Physo128809;Parent=Physo128809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1097984 1098043 . + 0 ID=Physo128809;Parent=Physo128809;rank=1 scaffold_5 . exon 1097984 1098043 . + . ID=Physo128809.1;Parent=Physo128809;constitutive=1;rank=1 scaffold_5 . CDS 1098118 1098519 . + 0 ID=Physo128809;Parent=Physo128809;rank=2 scaffold_5 . exon 1098118 1098519 . + . ID=Physo128809.2;Parent=Physo128809;constitutive=1;rank=2 scaffold_5 . CDS 1098585 1098740 . + 0 ID=Physo128809;Parent=Physo128809;rank=3 scaffold_5 . exon 1098585 1098740 . + . ID=Physo128809.3;Parent=Physo128809;constitutive=1;rank=3 scaffold_5 . CDS 1098806 1098877 . + 0 ID=Physo128809;Parent=Physo128809;rank=4 scaffold_5 . exon 1098806 1098877 . + . ID=Physo128809.4;Parent=Physo128809;constitutive=1;rank=4 scaffold_5 ensembl protein_coding_gene 1098977 1102303 . - . ID=Physo128810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50307;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1098977 1102303 . - . ID=Physo128810;Parent=Physo128810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1098977 1102303 . - 0 ID=Physo128810;Parent=Physo128810;rank=1 scaffold_5 . exon 1098977 1102303 . - . ID=Physo128810.1;Parent=Physo128810;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1102828 1103531 . + . ID=Physo128811;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50308;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1102828 1103531 . + . ID=Physo128811;Parent=Physo128811;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1102828 1103397 . + 0 ID=Physo128811;Parent=Physo128811;rank=1 scaffold_5 . exon 1102828 1103531 . + . ID=Physo128811.1;Parent=Physo128811;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 1103586 1105157 . - . ID=Physo155554;biotype=protein_coding;external_name=C_scaffold_5000078;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1103586 1105157 . - . ID=Physo155554;Parent=Physo155554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1103586 1105157 . - 0 ID=Physo155554;Parent=Physo155554;rank=1 scaffold_5 . exon 1103586 1105157 . - . ID=Physo155554.1;Parent=Physo155554;constitutive=1;rank=1 scaffold_5 . biological_region 1105662 1105662 0.999 - . logic_name=eponine scaffold_5 . biological_region 1106335 1106338 0.999 - . logic_name=eponine scaffold_5 . biological_region 1106347 1106350 0.999 + . logic_name=eponine scaffold_5 . biological_region 1106368 1106370 0.999 - . logic_name=eponine scaffold_5 . biological_region 1106400 1106404 0.999 - . logic_name=eponine scaffold_5 . biological_region 1106418 1106425 0.999 - . logic_name=eponine scaffold_5 . biological_region 1106478 1106481 0.999 - . logic_name=eponine scaffold_5 . biological_region 1110436 1110438 0.999 + . logic_name=eponine scaffold_5 . biological_region 1110459 1110459 0.999 - . logic_name=eponine scaffold_5 . biological_region 1110688 1110692 0.999 - . logic_name=eponine scaffold_5 . biological_region 1111808 1111816 0.999 + . logic_name=eponine scaffold_5 . biological_region 1112370 1112373 0.999 + . logic_name=eponine scaffold_5 . biological_region 1112379 1112381 0.999 + . logic_name=eponine scaffold_5 . biological_region 1112776 1112780 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 1105533 1110225 . + . ID=Physo128813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50310;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1105533 1110225 . + . ID=Physo128813;Parent=Physo128813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1105533 1106563 . + 0 ID=Physo128813;Parent=Physo128813;rank=1 scaffold_5 . exon 1105533 1106563 . + . ID=Physo128813.1;Parent=Physo128813;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1106889 1110225 . + 0 ID=Physo128813;Parent=Physo128813;rank=2 scaffold_5 . exon 1106889 1110225 . + . ID=Physo128813.2;Parent=Physo128813;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 ensembl protein_coding_gene 1112715 1114009 . - . ID=Physo128815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50312;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1112715 1114009 . - . ID=Physo128815;Parent=Physo128815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1112715 1113656 . - . ID=Physo128815.2;Parent=Physo128815;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_5 . CDS 1113262 1113654 . - 0 ID=Physo128815;Parent=Physo128815;rank=1 scaffold_5 . exon 1113973 1114009 . - . ID=Physo128815.1;Parent=Physo128815;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 1114363 1118232 . - . ID=Physo128816;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50313;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1114363 1118232 . - . ID=Physo128816;Parent=Physo128816;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1114363 1117527 . - . ID=Physo128816.2;Parent=Physo128816;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1114371 1117527 . - 0 ID=Physo128816;Parent=Physo128816;rank=2 scaffold_5 . CDS 1117661 1118232 . - 0 ID=Physo128816;Parent=Physo128816;rank=1 scaffold_5 ensembl protein_coding_gene 1110322 1112613 . - . ID=Physo155557;biotype=protein_coding;external_name=C_scaffold_5000081;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1110322 1112613 . - . ID=Physo155557;Parent=Physo155557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1110322 1110368 . - 0 ID=Physo155557;Parent=Physo155557;rank=5 scaffold_5 . exon 1110322 1110368 . - . ID=Physo155557.5;Parent=Physo155557;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 1110495 1110751 . - 0 ID=Physo155557;Parent=Physo155557;rank=4 scaffold_5 . exon 1110495 1110751 . - . ID=Physo155557.4;Parent=Physo155557;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_5 . CDS 1110968 1111253 . - 0 ID=Physo155557;Parent=Physo155557;rank=3 scaffold_5 . exon 1110968 1111253 . - . ID=Physo155557.3;Parent=Physo155557;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_5 . CDS 1111386 1112431 . - 0 ID=Physo155557;Parent=Physo155557;rank=2 scaffold_5 . exon 1111386 1112431 . - . ID=Physo155557.2;Parent=Physo155557;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1112471 1112613 . - 0 ID=Physo155557;Parent=Physo155557;rank=1 scaffold_5 . exon 1112471 1112613 . - . ID=Physo155557.1;Parent=Physo155557;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . repeat_region 1117531 1117598 . ? . description=trf scaffold_5 . repeat_region 1118684 1118729 . ? . description=trf scaffold_5 . repeat_region 1121166 1122402 . ? . description=dust scaffold_5 . repeat_region 1123031 1124153 . ? . description=dust scaffold_5 . exon 1117661 1118232 . - . ID=Physo128816.1;Parent=Physo128816;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 ensembl protein_coding_gene 1118594 1120968 . + . ID=Physo155560;biotype=protein_coding;external_name=C_scaffold_5000084;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1118594 1120968 . + . ID=Physo155560;Parent=Physo155560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1118594 1118598 . + 0 ID=Physo155560;Parent=Physo155560;rank=1 scaffold_5 . exon 1118594 1118598 . + . ID=Physo155560.1;Parent=Physo155560;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1118658 1118850 . + 0 ID=Physo155560;Parent=Physo155560;rank=2 scaffold_5 . exon 1118658 1118850 . + . ID=Physo155560.2;Parent=Physo155560;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1118926 1119046 . + 0 ID=Physo155560;Parent=Physo155560;rank=3 scaffold_5 . exon 1118926 1119046 . + . ID=Physo155560.3;Parent=Physo155560;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_5 . CDS 1119182 1119381 . + 0 ID=Physo155560;Parent=Physo155560;rank=4 scaffold_5 . exon 1119182 1119381 . + . ID=Physo155560.4;Parent=Physo155560;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 1119452 1119669 . + 0 ID=Physo155560;Parent=Physo155560;rank=5 scaffold_5 . exon 1119452 1119669 . + . ID=Physo155560.5;Parent=Physo155560;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_5 . CDS 1119939 1120346 . + 0 ID=Physo155560;Parent=Physo155560;rank=6 scaffold_5 . exon 1119939 1120346 . + . ID=Physo155560.6;Parent=Physo155560;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_5 . CDS 1120617 1120968 . + 0 ID=Physo155560;Parent=Physo155560;rank=7 scaffold_5 . exon 1120617 1120968 . + . ID=Physo155560.7;Parent=Physo155560;constitutive=1;ensembl_phase=2;rank=7 scaffold_5 . biological_region 1124978 1124979 0.999 - . logic_name=eponine scaffold_5 . biological_region 1125257 1125261 0.999 - . logic_name=eponine scaffold_5 . biological_region 1125343 1125347 0.999 + . logic_name=eponine scaffold_5 . biological_region 1125814 1125818 0.999 - . logic_name=eponine scaffold_5 . biological_region 1125871 1125873 0.999 + . logic_name=eponine scaffold_5 . biological_region 1125915 1125916 0.999 + . logic_name=eponine scaffold_5 . biological_region 1130146 1130147 0.999 - . logic_name=eponine scaffold_5 . biological_region 1130425 1130429 0.999 - . logic_name=eponine scaffold_5 . biological_region 1130511 1130515 0.999 + . logic_name=eponine scaffold_5 . biological_region 1130982 1130986 0.999 - . logic_name=eponine scaffold_5 . biological_region 1131039 1131041 0.999 + . logic_name=eponine scaffold_5 . biological_region 1131083 1131084 0.999 + . logic_name=eponine scaffold_5 . biological_region 1132251 1132253 0.999 - . logic_name=eponine scaffold_5 . biological_region 1132306 1132313 0.999 + . logic_name=eponine scaffold_5 . biological_region 1132353 1132356 0.999 - . logic_name=eponine scaffold_5 . biological_region 1132382 1132388 0.999 - . logic_name=eponine scaffold_5 . biological_region 1132406 1132413 0.999 - . logic_name=eponine scaffold_5 . biological_region 1132464 1132467 0.999 + . logic_name=eponine scaffold_5 . biological_region 1132745 1132748 0.999 - . logic_name=eponine scaffold_5 . biological_region 1132775 1132778 0.999 - . logic_name=eponine scaffold_5 . biological_region 1132833 1132833 0.999 + . logic_name=eponine scaffold_5 . biological_region 1133043 1133047 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 1124439 1125642 . + . ID=Physo128818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50315;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1124439 1125642 . + . ID=Physo128818;Parent=Physo128818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1124439 1124669 . + 0 ID=Physo128818;Parent=Physo128818;rank=1 scaffold_5 . exon 1124439 1124669 . + . ID=Physo128818.1;Parent=Physo128818;constitutive=1;rank=1 scaffold_5 . CDS 1124808 1125455 . + 0 ID=Physo128818;Parent=Physo128818;rank=2 scaffold_5 . exon 1124808 1125642 . + . ID=Physo128818.2;Parent=Physo128818;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_5 ensembl protein_coding_gene 1128972 1130810 . + . ID=Physo128819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50316;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1128972 1130810 . + . ID=Physo128819;Parent=Physo128819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1128972 1129276 . + 0 ID=Physo128819;Parent=Physo128819;rank=1 scaffold_5 . exon 1128972 1129276 . + . ID=Physo128819.1;Parent=Physo128819;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1129429 1129513 . + 0 ID=Physo128819;Parent=Physo128819;rank=2 scaffold_5 . exon 1129429 1129513 . + . ID=Physo128819.2;Parent=Physo128819;constitutive=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1129589 1129837 . + 0 ID=Physo128819;Parent=Physo128819;rank=3 scaffold_5 . exon 1129589 1129837 . + . ID=Physo128819.3;Parent=Physo128819;constitutive=1;rank=3 scaffold_5 . CDS 1129976 1130623 . + 0 ID=Physo128819;Parent=Physo128819;rank=4 scaffold_5 . exon 1129976 1130810 . + . ID=Physo128819.4;Parent=Physo128819;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_5 ensembl protein_coding_gene 1132155 1133264 . + . ID=Physo128820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50317;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1132155 1133264 . + . ID=Physo128820;Parent=Physo128820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1132155 1133264 . + 0 ID=Physo128820;Parent=Physo128820;rank=1 scaffold_5 . exon 1132155 1133264 . + . ID=Physo128820.1;Parent=Physo128820;constitutive=1;rank=1 scaffold_5 ensembl protein_coding_gene 1134017 1140096 . - . ID=Physo155561;biotype=protein_coding;external_name=C_scaffold_5000085;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1134017 1140096 . - . ID=Physo155561;Parent=Physo155561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1134017 1134022 . - 0 ID=Physo155561;Parent=Physo155561;rank=22 scaffold_5 . exon 1134017 1134022 . - . ID=Physo155561.22;Parent=Physo155561;constitutive=1;rank=22 scaffold_5 . CDS 1134045 1134836 . - 0 ID=Physo155561;Parent=Physo155561;rank=21 scaffold_5 . exon 1134045 1134836 . - . ID=Physo155561.21;Parent=Physo155561;constitutive=1;rank=21 scaffold_5 . CDS 1134902 1134954 . - 0 ID=Physo155561;Parent=Physo155561;rank=20 scaffold_5 . CDS 1135045 1135484 . - 0 ID=Physo155561;Parent=Physo155561;rank=19 scaffold_5 . CDS 1135860 1136020 . - 0 ID=Physo155561;Parent=Physo155561;rank=18 scaffold_5 . CDS 1136102 1136168 . - 0 ID=Physo155561;Parent=Physo155561;rank=17 scaffold_5 . CDS 1136256 1136345 . - 0 ID=Physo155561;Parent=Physo155561;rank=16 scaffold_5 . CDS 1136428 1136609 . - 0 ID=Physo155561;Parent=Physo155561;rank=15 scaffold_5 . CDS 1136696 1136780 . - 0 ID=Physo155561;Parent=Physo155561;rank=14 scaffold_5 . CDS 1136844 1136893 . - 0 ID=Physo155561;Parent=Physo155561;rank=13 scaffold_5 . CDS 1137068 1137184 . - 0 ID=Physo155561;Parent=Physo155561;rank=12 scaffold_5 . CDS 1137283 1137348 . - 0 ID=Physo155561;Parent=Physo155561;rank=11 scaffold_5 . CDS 1137383 1137462 . - 0 ID=Physo155561;Parent=Physo155561;rank=10 scaffold_5 . CDS 1137536 1137551 . - 0 ID=Physo155561;Parent=Physo155561;rank=9 scaffold_5 . CDS 1137588 1137741 . - 0 ID=Physo155561;Parent=Physo155561;rank=8 scaffold_5 . CDS 1137810 1138168 . - 0 ID=Physo155561;Parent=Physo155561;rank=7 scaffold_5 . CDS 1138503 1138565 . - 0 ID=Physo155561;Parent=Physo155561;rank=6 scaffold_5 . CDS 1138653 1138711 . - 0 ID=Physo155561;Parent=Physo155561;rank=5 scaffold_5 . CDS 1138999 1139281 . - 0 ID=Physo155561;Parent=Physo155561;rank=4 scaffold_5 . CDS 1139355 1139536 . - 0 ID=Physo155561;Parent=Physo155561;rank=3 scaffold_5 . CDS 1139608 1139943 . - 0 ID=Physo155561;Parent=Physo155561;rank=2 scaffold_5 . CDS 1140045 1140096 . - 0 ID=Physo155561;Parent=Physo155561;rank=1 scaffold_5 . repeat_region 1135862 1135904 . ? . description=dust scaffold_5 . repeat_region 1135863 1135894 . ? . description=trf scaffold_5 . repeat_region 1135863 1135897 . ? . description=trf scaffold_5 . repeat_region 1141276 1141304 . ? . description=dust scaffold_5 . repeat_region 1141276 1141304 . ? . description=trf scaffold_5 . repeat_region 1141276 1141304 . ? . description=trf scaffold_5 . repeat_region 1141668 1141705 . ? . description=trf scaffold_5 . repeat_region 1141668 1141712 . + . description=(TCG)n scaffold_5 . repeat_region 1141680 1141705 . ? . description=dust scaffold_5 . repeat_region 1142896 1142923 . ? . description=dust scaffold_5 . repeat_region 1143648 1143816 . - . description=Polinton-1_PI scaffold_5 . repeat_region 1143832 1143902 . - . description=Polinton-1_PI scaffold_5 . repeat_region 1143938 1144242 . + . description=Polinton-1_PI scaffold_5 ensembl protein_coding_gene 1142090 1143130 . - . ID=Physo128823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50320;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1142090 1143130 . - . ID=Physo128823;Parent=Physo128823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1142090 1143130 . - 0 ID=Physo128823;Parent=Physo128823;rank=1 scaffold_5 . exon 1142090 1143130 . - . ID=Physo128823.1;Parent=Physo128823;constitutive=1;rank=1 scaffold_5 ensembl pseudogene 1144113 1147047 . + . ID=Physo128824;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_50321;logic_name=jgi_physo1_1 scaffold_5 ensembl pseudogene 1144113 1147047 . + . ID=Physo128824;Parent=Physo128824;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_5 . exon 1144113 1144189 . + . ID=Physo128824.1;Parent=Physo128824;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_5 . exon 1134902 1134954 . - . ID=Physo155561.20;Parent=Physo155561;constitutive=1;ensembl_phase=1;rank=20 scaffold_5 . exon 1135045 1135484 . - . ID=Physo155561.19;Parent=Physo155561;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=19 scaffold_5 . exon 1135860 1136020 . - . ID=Physo155561.18;Parent=Physo155561;constitutive=1;ensembl_end_phase=2;rank=18 scaffold_5 . exon 1136102 1136168 . - . ID=Physo155561.17;Parent=Physo155561;constitutive=1;ensembl_phase=2;rank=17 scaffold_5 . exon 1136256 1136345 . - . ID=Physo155561.16;Parent=Physo155561;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=16 scaffold_5 . exon 1136428 1136609 . - . ID=Physo155561.15;Parent=Physo155561;constitutive=1;ensembl_end_phase=2;rank=15 scaffold_5 . exon 1136696 1136780 . - . ID=Physo155561.14;Parent=Physo155561;constitutive=1;ensembl_phase=2;rank=14 scaffold_5 . exon 1136844 1136893 . - . ID=Physo155561.13;Parent=Physo155561;constitutive=1;ensembl_end_phase=2;rank=13 scaffold_5 . exon 1137068 1137184 . - . ID=Physo155561.12;Parent=Physo155561;constitutive=1;rank=12 scaffold_5 . exon 1137283 1137348 . - . ID=Physo155561.11;Parent=Physo155561;constitutive=1;rank=11 scaffold_5 . exon 1137383 1137462 . - . ID=Physo155561.10;Parent=Physo155561;constitutive=1;ensembl_phase=1;rank=10 scaffold_5 . exon 1137536 1137551 . - . ID=Physo155561.9;Parent=Physo155561;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_5 . exon 1137588 1137741 . - . ID=Physo155561.8;Parent=Physo155561;constitutive=1;ensembl_phase=2;rank=8 scaffold_5 . exon 1137810 1138168 . - . ID=Physo155561.7;Parent=Physo155561;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_5 . exon 1138503 1138565 . - . ID=Physo155561.6;Parent=Physo155561;constitutive=1;rank=6 scaffold_5 . exon 1138653 1138711 . - . ID=Physo155561.5;Parent=Physo155561;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . exon 1138999 1139281 . - . ID=Physo155561.4;Parent=Physo155561;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . exon 1139355 1139536 . - . ID=Physo155561.3;Parent=Physo155561;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 . exon 1139608 1139943 . - . ID=Physo155561.2;Parent=Physo155561;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_5 . exon 1140045 1140096 . - . ID=Physo155561.1;Parent=Physo155561;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 ensembl protein_coding_gene 1140281 1141134 . + . ID=Physo155562;biotype=protein_coding;external_name=C_scaffold_5000086;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1140281 1141134 . + . ID=Physo155562;Parent=Physo155562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1140281 1140463 . + 0 ID=Physo155562;Parent=Physo155562;rank=1 scaffold_5 . exon 1140281 1140463 . + . ID=Physo155562.1;Parent=Physo155562;constitutive=1;rank=1 scaffold_5 . CDS 1140539 1140582 . + 0 ID=Physo155562;Parent=Physo155562;rank=2 scaffold_5 . exon 1140539 1140582 . + . ID=Physo155562.2;Parent=Physo155562;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . CDS 1140659 1140736 . + 0 ID=Physo155562;Parent=Physo155562;rank=3 scaffold_5 . exon 1140659 1140736 . + . ID=Physo155562.3;Parent=Physo155562;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_5 . CDS 1140808 1140951 . + 0 ID=Physo155562;Parent=Physo155562;rank=4 scaffold_5 . exon 1140808 1140951 . + . ID=Physo155562.4;Parent=Physo155562;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_5 . CDS 1141023 1141134 . + 0 ID=Physo155562;Parent=Physo155562;rank=5 scaffold_5 . exon 1141023 1141134 . + . ID=Physo155562.5;Parent=Physo155562;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 . exon 1146120 1147047 . + . ID=Physo128824.2;Parent=Physo128824;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_5 ensembl protein_coding_gene 1148913 1149971 . + . ID=Physo128825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50322;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1148913 1149971 . + . ID=Physo128825;Parent=Physo128825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1148913 1149971 . + 0 ID=Physo128825;Parent=Physo128825;rank=1 scaffold_5 . exon 1148913 1149971 . + . ID=Physo128825.1;Parent=Physo128825;constitutive=1;rank=1 scaffold_5 . repeat_region 1154576 1154810 . + . description=Polinton-1_PI scaffold_5 . repeat_region 1154819 1155100 . ? . description=dust scaffold_5 . repeat_region 1155109 1158249 . + . description=Polinton-1_PI scaffold_5 . repeat_region 1155324 1155361 . ? . description=dust scaffold_5 . repeat_region 1156586 1156647 . ? . description=dust scaffold_5 . repeat_region 1157978 1157986 . ? . description=dust scaffold_5 . repeat_region 1158075 1158083 . ? . description=dust scaffold_5 . repeat_region 1160397 1160597 . ? . description=trf scaffold_5 . repeat_region 1160868 1166126 . + . description=Polinton-1_PI scaffold_5 . repeat_region 1162634 1162642 . ? . description=dust scaffold_5 . biological_region 1166118 1166119 0.999 + . logic_name=eponine scaffold_5 . biological_region 1166486 1166491 0.999 + . logic_name=eponine scaffold_5 . biological_region 1166539 1166542 0.999 + . logic_name=eponine scaffold_5 . biological_region 1166766 1166771 0.999 + . logic_name=eponine scaffold_5 . biological_region 1166822 1166827 0.999 + . logic_name=eponine scaffold_5 . biological_region 1166892 1166896 0.999 - . logic_name=eponine scaffold_5 . biological_region 1167334 1167337 0.999 - . logic_name=eponine scaffold_5 . biological_region 1169668 1169676 0.999 + . logic_name=eponine scaffold_5 . biological_region 1170589 1170593 0.999 + . logic_name=eponine scaffold_5 . biological_region 1170720 1170729 0.999 - . logic_name=eponine scaffold_5 . biological_region 1170749 1170751 0.999 - . logic_name=eponine scaffold_5 . biological_region 1170777 1170778 0.999 - . logic_name=eponine scaffold_5 . biological_region 1173933 1173936 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 1166446 1168144 . + . ID=Physo128826;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50323;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1166446 1168144 . + . ID=Physo128826;Parent=Physo128826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1166446 1168074 . + 0 ID=Physo128826;Parent=Physo128826;rank=1 scaffold_5 . exon 1166446 1168144 . + . ID=Physo128826.1;Parent=Physo128826;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 1168531 1171668 . - . ID=Physo128827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50324;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1168531 1171668 . - . ID=Physo128827;Parent=Physo128827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1168531 1168649 . - 0 ID=Physo128827;Parent=Physo128827;rank=5 scaffold_5 . exon 1168531 1168649 . - . ID=Physo128827.5;Parent=Physo128827;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . CDS 1168690 1169242 . - 0 ID=Physo128827;Parent=Physo128827;rank=4 scaffold_5 . exon 1168690 1169242 . - . ID=Physo128827.4;Parent=Physo128827;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_5 . CDS 1169314 1169482 . - 0 ID=Physo128827;Parent=Physo128827;rank=3 scaffold_5 . exon 1169314 1169482 . - . ID=Physo128827.3;Parent=Physo128827;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 1169562 1170242 . - 0 ID=Physo128827;Parent=Physo128827;rank=2 scaffold_5 . exon 1169562 1170242 . - . ID=Physo128827.2;Parent=Physo128827;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 1170565 1171649 . - 0 ID=Physo128827;Parent=Physo128827;rank=1 scaffold_5 . exon 1170565 1171668 . - . ID=Physo128827.1;Parent=Physo128827;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_5 ensembl protein_coding_gene 1173762 1177010 . + . ID=Physo155563;biotype=protein_coding;external_name=C_scaffold_5000087;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1173762 1177010 . + . ID=Physo155563;Parent=Physo155563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1173762 1174855 . + 0 ID=Physo155563;Parent=Physo155563;rank=1 scaffold_5 . exon 1173762 1174855 . + . ID=Physo155563.1;Parent=Physo155563;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1175373 1176254 . + 0 ID=Physo155563;Parent=Physo155563;rank=2 scaffold_5 . CDS 1176440 1176824 . + 0 ID=Physo155563;Parent=Physo155563;rank=3 scaffold_5 . CDS 1176909 1177010 . + 0 ID=Physo155563;Parent=Physo155563;rank=4 scaffold_5 . repeat_region 1174789 1174846 . ? . description=dust scaffold_5 . repeat_region 1175806 1175829 . ? . description=trf scaffold_5 . repeat_region 1181770 1181793 . ? . description=dust scaffold_5 . repeat_region 1181770 1181793 . ? . description=trf scaffold_5 ensembl protein_coding_gene 1177159 1180280 . - . ID=Physo128829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50326;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1177159 1180280 . - . ID=Physo128829;Parent=Physo128829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1177159 1179640 . - . ID=Physo128829.2;Parent=Physo128829;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1177237 1179640 . - 0 ID=Physo128829;Parent=Physo128829;rank=2 scaffold_5 . CDS 1179727 1180280 . - 0 ID=Physo128829;Parent=Physo128829;rank=1 scaffold_5 . exon 1179727 1180280 . - . ID=Physo128829.1;Parent=Physo128829;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . exon 1175373 1176254 . + . ID=Physo155563.2;Parent=Physo155563;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . exon 1176440 1176824 . + . ID=Physo155563.3;Parent=Physo155563;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . exon 1176909 1177010 . + . ID=Physo155563.4;Parent=Physo155563;constitutive=1;rank=4 scaffold_5 ensembl protein_coding_gene 1181554 1188028 . - . ID=Physo155565;biotype=protein_coding;external_name=C_scaffold_5000089;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1181554 1188028 . - . ID=Physo155565;Parent=Physo155565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1181554 1182000 . - 0 ID=Physo155565;Parent=Physo155565;rank=16 scaffold_5 . exon 1181554 1182000 . - . ID=Physo155565.16;Parent=Physo155565;constitutive=1;rank=16 scaffold_5 . CDS 1182253 1182328 . - 0 ID=Physo155565;Parent=Physo155565;rank=15 scaffold_5 . exon 1182253 1182328 . - . ID=Physo155565.15;Parent=Physo155565;constitutive=1;ensembl_phase=2;rank=15 scaffold_5 . CDS 1182371 1182699 . - 0 ID=Physo155565;Parent=Physo155565;rank=14 scaffold_5 . exon 1182371 1182699 . - . ID=Physo155565.14;Parent=Physo155565;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_5 . CDS 1182736 1183014 . - 0 ID=Physo155565;Parent=Physo155565;rank=13 scaffold_5 . exon 1182736 1183014 . - . ID=Physo155565.13;Parent=Physo155565;constitutive=1;rank=13 scaffold_5 . CDS 1183084 1183326 . - 0 ID=Physo155565;Parent=Physo155565;rank=12 scaffold_5 . exon 1183084 1183326 . - . ID=Physo155565.12;Parent=Physo155565;constitutive=1;rank=12 scaffold_5 . CDS 1183357 1183668 . - 0 ID=Physo155565;Parent=Physo155565;rank=11 scaffold_5 . exon 1183357 1183668 . - . ID=Physo155565.11;Parent=Physo155565;constitutive=1;rank=11 scaffold_5 . CDS 1183771 1184041 . - 0 ID=Physo155565;Parent=Physo155565;rank=10 scaffold_5 . exon 1183771 1184041 . - . ID=Physo155565.10;Parent=Physo155565;constitutive=1;ensembl_phase=2;rank=10 scaffold_5 . CDS 1184078 1185144 . - 0 ID=Physo155565;Parent=Physo155565;rank=9 scaffold_5 . CDS 1185286 1185613 . - 0 ID=Physo155565;Parent=Physo155565;rank=8 scaffold_5 . CDS 1185686 1185832 . - 0 ID=Physo155565;Parent=Physo155565;rank=7 scaffold_5 . CDS 1185941 1186059 . - 0 ID=Physo155565;Parent=Physo155565;rank=6 scaffold_5 . CDS 1186130 1186218 . - 0 ID=Physo155565;Parent=Physo155565;rank=5 scaffold_5 . CDS 1186278 1186415 . - 0 ID=Physo155565;Parent=Physo155565;rank=4 scaffold_5 . CDS 1187022 1187224 . - 0 ID=Physo155565;Parent=Physo155565;rank=3 scaffold_5 . CDS 1187343 1187662 . - 0 ID=Physo155565;Parent=Physo155565;rank=2 scaffold_5 . CDS 1187687 1188028 . - 0 ID=Physo155565;Parent=Physo155565;rank=1 scaffold_5 . biological_region 1185438 1185438 0.999 - . logic_name=eponine scaffold_5 . biological_region 1187346 1187346 0.999 + . logic_name=eponine scaffold_5 . biological_region 1187437 1187437 0.999 + . logic_name=eponine scaffold_5 . biological_region 1187457 1187463 0.999 - . logic_name=eponine scaffold_5 . biological_region 1187852 1187857 0.999 + . logic_name=eponine scaffold_5 . biological_region 1187943 1187944 0.999 - . logic_name=eponine scaffold_5 . biological_region 1189563 1189567 0.999 + . logic_name=eponine scaffold_5 ensembl protein_coding_gene 1188176 1191971 . + . ID=Physo128831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50328;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1188176 1191971 . + . ID=Physo128831;Parent=Physo128831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1188176 1188391 . + 0 ID=Physo128831;Parent=Physo128831;rank=1 scaffold_5 . exon 1188176 1188391 . + . ID=Physo128831.1;Parent=Physo128831;constitutive=1;rank=1 scaffold_5 . CDS 1188458 1188515 . + 0 ID=Physo128831;Parent=Physo128831;rank=2 scaffold_5 . exon 1188458 1188515 . + . ID=Physo128831.2;Parent=Physo128831;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_5 . CDS 1188871 1188876 . + 0 ID=Physo128831;Parent=Physo128831;rank=3 scaffold_5 . exon 1188871 1188876 . + . ID=Physo128831.3;Parent=Physo128831;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 1188949 1189074 . + 0 ID=Physo128831;Parent=Physo128831;rank=4 scaffold_5 . exon 1188949 1189074 . + . ID=Physo128831.4;Parent=Physo128831;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . CDS 1189153 1189870 . + 0 ID=Physo128831;Parent=Physo128831;rank=5 scaffold_5 . exon 1189153 1189870 . + . ID=Physo128831.5;Parent=Physo128831;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_5 . CDS 1190023 1190072 . + 0 ID=Physo128831;Parent=Physo128831;rank=6 scaffold_5 . exon 1190023 1190072 . + . ID=Physo128831.6;Parent=Physo128831;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 1190251 1191971 . + 0 ID=Physo128831;Parent=Physo128831;rank=7 scaffold_5 . exon 1190251 1191971 . + . ID=Physo128831.7;Parent=Physo128831;constitutive=1;ensembl_phase=1;rank=7 scaffold_5 ensembl protein_coding_gene 1192836 1193279 . + . ID=Physo128832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50329;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1192836 1193279 . + . ID=Physo128832;Parent=Physo128832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1192836 1193279 . + 0 ID=Physo128832;Parent=Physo128832;rank=1 scaffold_5 . exon 1192836 1193279 . + . ID=Physo128832.1;Parent=Physo128832;constitutive=1;rank=1 scaffold_5 . exon 1184078 1185144 . - . ID=Physo155565.9;Parent=Physo155565;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_5 . exon 1185286 1185613 . - . ID=Physo155565.8;Parent=Physo155565;constitutive=1;ensembl_phase=2;rank=8 scaffold_5 . exon 1185686 1185832 . - . ID=Physo155565.7;Parent=Physo155565;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_5 . exon 1185941 1186059 . - . ID=Physo155565.6;Parent=Physo155565;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_5 . exon 1186130 1186218 . - . ID=Physo155565.5;Parent=Physo155565;constitutive=1;ensembl_phase=1;rank=5 scaffold_5 . exon 1186278 1186415 . - . ID=Physo155565.4;Parent=Physo155565;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_5 . exon 1187022 1187224 . - . ID=Physo155565.3;Parent=Physo155565;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_5 . exon 1187343 1187662 . - . ID=Physo155565.2;Parent=Physo155565;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_5 . exon 1187687 1188028 . - . ID=Physo155565.1;Parent=Physo155565;constitutive=1;rank=1 scaffold_5 . repeat_region 1195336 1195360 . ? . description=trf scaffold_5 . repeat_region 1196416 1196433 . ? . description=dust scaffold_5 . repeat_region 1197346 1197366 . ? . description=dust scaffold_5 . repeat_region 1197346 1197366 . ? . description=trf scaffold_5 . repeat_region 1200185 1200234 . ? . description=dust scaffold_5 . repeat_region 1200187 1200280 . + . description=(CGA)n scaffold_5 . repeat_region 1200465 1200499 . ? . description=dust scaffold_5 . repeat_region 1200465 1200499 . ? . description=trf scaffold_5 ensembl protein_coding_gene 1201590 1203505 . + . ID=Physo128836;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50333;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1201590 1203505 . + . ID=Physo128836;Parent=Physo128836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1201590 1202213 . + 0 ID=Physo128836;Parent=Physo128836;rank=1 scaffold_5 . exon 1201590 1202213 . + . ID=Physo128836.1;Parent=Physo128836;constitutive=1;rank=1 scaffold_5 . CDS 1202286 1202528 . + 0 ID=Physo128836;Parent=Physo128836;rank=2 scaffold_5 . exon 1202286 1202528 . + . ID=Physo128836.2;Parent=Physo128836;constitutive=1;rank=2 scaffold_5 . CDS 1202849 1203064 . + 0 ID=Physo128836;Parent=Physo128836;rank=3 scaffold_5 . exon 1202849 1203064 . + . ID=Physo128836.3;Parent=Physo128836;constitutive=1;rank=3 scaffold_5 . CDS 1203146 1203505 . + 0 ID=Physo128836;Parent=Physo128836;rank=4 scaffold_5 . exon 1203146 1203505 . + . ID=Physo128836.4;Parent=Physo128836;constitutive=1;rank=4 scaffold_5 ensembl protein_coding_gene 1195103 1200334 . + . ID=Physo155567;biotype=protein_coding;external_name=C_scaffold_5000091;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1195103 1200334 . + . ID=Physo155567;Parent=Physo155567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . exon 1195103 1195317 . + . ID=Physo155567.1;Parent=Physo155567;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_5 . CDS 1195104 1195317 . + 0 ID=Physo155567;Parent=Physo155567;rank=1 scaffold_5 . CDS 1195721 1195913 . + 0 ID=Physo155567;Parent=Physo155567;rank=2 scaffold_5 . exon 1195721 1195913 . + . ID=Physo155567.2;Parent=Physo155567;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_5 . CDS 1195995 1196073 . + 0 ID=Physo155567;Parent=Physo155567;rank=3 scaffold_5 . exon 1195995 1196073 . + . ID=Physo155567.3;Parent=Physo155567;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 1196107 1196246 . + 0 ID=Physo155567;Parent=Physo155567;rank=4 scaffold_5 . exon 1196107 1196246 . + . ID=Physo155567.4;Parent=Physo155567;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_5 . CDS 1196277 1196402 . + 0 ID=Physo155567;Parent=Physo155567;rank=5 scaffold_5 . exon 1196277 1196402 . + . ID=Physo155567.5;Parent=Physo155567;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_5 . CDS 1196483 1196592 . + 0 ID=Physo155567;Parent=Physo155567;rank=6 scaffold_5 . exon 1196483 1196592 . + . ID=Physo155567.6;Parent=Physo155567;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_5 . CDS 1196659 1196674 . + 0 ID=Physo155567;Parent=Physo155567;rank=7 scaffold_5 . exon 1196659 1196674 . + . ID=Physo155567.7;Parent=Physo155567;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_5 . CDS 1196968 1197284 . + 0 ID=Physo155567;Parent=Physo155567;rank=8 scaffold_5 . exon 1196968 1197284 . + . ID=Physo155567.8;Parent=Physo155567;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_5 . CDS 1197414 1197520 . + 0 ID=Physo155567;Parent=Physo155567;rank=9 scaffold_5 . exon 1197414 1197520 . + . ID=Physo155567.9;Parent=Physo155567;constitutive=1;ensembl_phase=1;rank=9 scaffold_5 . CDS 1197743 1197982 . + 0 ID=Physo155567;Parent=Physo155567;rank=10 scaffold_5 . exon 1197743 1197982 . + . ID=Physo155567.10;Parent=Physo155567;constitutive=1;rank=10 scaffold_5 . CDS 1198127 1198370 . + 0 ID=Physo155567;Parent=Physo155567;rank=11 scaffold_5 . exon 1198127 1198370 . + . ID=Physo155567.11;Parent=Physo155567;constitutive=1;ensembl_end_phase=1;rank=11 scaffold_5 . CDS 1198419 1198678 . + 0 ID=Physo155567;Parent=Physo155567;rank=12 scaffold_5 . exon 1198419 1198678 . + . ID=Physo155567.12;Parent=Physo155567;constitutive=1;ensembl_phase=1;rank=12 scaffold_5 . CDS 1198753 1199337 . + 0 ID=Physo155567;Parent=Physo155567;rank=13 scaffold_5 . exon 1198753 1199337 . + . ID=Physo155567.13;Parent=Physo155567;constitutive=1;rank=13 scaffold_5 . CDS 1199368 1200133 . + 0 ID=Physo155567;Parent=Physo155567;rank=14 scaffold_5 . exon 1199368 1200133 . + . ID=Physo155567.14;Parent=Physo155567;constitutive=1;ensembl_end_phase=1;rank=14 scaffold_5 . CDS 1200255 1200334 . + 0 ID=Physo155567;Parent=Physo155567;rank=15 scaffold_5 . exon 1200255 1200334 . + . ID=Physo155567.15;Parent=Physo155567;constitutive=1;ensembl_phase=1;rank=15 scaffold_5 ensembl protein_coding_gene 1200652 1201397 . - . ID=Physo155568;biotype=protein_coding;external_name=C_scaffold_5000092;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1200652 1201397 . - . ID=Physo155568;Parent=Physo155568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1200652 1200805 . - 0 ID=Physo155568;Parent=Physo155568;rank=3 scaffold_5 . exon 1200652 1200805 . - . ID=Physo155568.3;Parent=Physo155568;constitutive=1;ensembl_phase=2;rank=3 scaffold_5 . CDS 1200886 1201194 . - 0 ID=Physo155568;Parent=Physo155568;rank=2 scaffold_5 . exon 1200886 1201194 . - . ID=Physo155568.2;Parent=Physo155568;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_5 . CDS 1201291 1201397 . - 0 ID=Physo155568;Parent=Physo155568;rank=1 scaffold_5 . exon 1201291 1201397 . - . ID=Physo155568.1;Parent=Physo155568;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . biological_region 1206636 1206639 0.999 - . logic_name=eponine scaffold_5 . biological_region 1209040 1209043 0.999 + . logic_name=eponine scaffold_5 . biological_region 1213749 1213753 0.999 + . logic_name=eponine scaffold_5 . biological_region 1213781 1213782 0.999 + . logic_name=eponine scaffold_5 . biological_region 1213871 1213875 0.999 + . logic_name=eponine scaffold_5 . biological_region 1213874 1213882 0.999 - . logic_name=eponine scaffold_5 ensembl protein_coding_gene 1205742 1207088 . + . ID=Physo128837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50334;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1205742 1207088 . + . ID=Physo128837;Parent=Physo128837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1205742 1205827 . + 0 ID=Physo128837;Parent=Physo128837;rank=1 scaffold_5 . exon 1205742 1205827 . + . ID=Physo128837.1;Parent=Physo128837;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1205926 1206083 . + 0 ID=Physo128837;Parent=Physo128837;rank=2 scaffold_5 . exon 1205926 1206083 . + . ID=Physo128837.2;Parent=Physo128837;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1206129 1206195 . + 0 ID=Physo128837;Parent=Physo128837;rank=3 scaffold_5 . exon 1206129 1206195 . + . ID=Physo128837.3;Parent=Physo128837;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_5 . CDS 1206295 1207041 . + 0 ID=Physo128837;Parent=Physo128837;rank=4 scaffold_5 . exon 1206295 1207041 . + . ID=Physo128837.4;Parent=Physo128837;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_5 . CDS 1207070 1207088 . + 0 ID=Physo128837;Parent=Physo128837;rank=5 scaffold_5 . exon 1207070 1207088 . + . ID=Physo128837.5;Parent=Physo128837;constitutive=1;ensembl_phase=2;rank=5 scaffold_5 ensembl protein_coding_gene 1209766 1210790 . + . ID=Physo128838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50335;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1209766 1210790 . + . ID=Physo128838;Parent=Physo128838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1209766 1210348 . + 0 ID=Physo128838;Parent=Physo128838;rank=1 scaffold_5 . exon 1209766 1210348 . + . ID=Physo128838.1;Parent=Physo128838;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_5 . CDS 1210418 1210512 . + 0 ID=Physo128838;Parent=Physo128838;rank=2 scaffold_5 . exon 1210418 1210512 . + . ID=Physo128838.2;Parent=Physo128838;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 1210575 1210790 . + 0 ID=Physo128838;Parent=Physo128838;rank=3 scaffold_5 . exon 1210575 1210790 . + . ID=Physo128838.3;Parent=Physo128838;constitutive=1;rank=3 scaffold_5 ensembl protein_coding_gene 1211069 1212166 . + . ID=Physo128839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50336;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1211069 1212166 . + . ID=Physo128839;Parent=Physo128839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1211069 1211314 . + 0 ID=Physo128839;Parent=Physo128839;rank=1 scaffold_5 . exon 1211069 1211314 . + . ID=Physo128839.1;Parent=Physo128839;constitutive=1;rank=1 scaffold_5 . CDS 1211411 1211530 . + 0 ID=Physo128839;Parent=Physo128839;rank=2 scaffold_5 . exon 1211411 1211530 . + . ID=Physo128839.2;Parent=Physo128839;constitutive=1;rank=2 scaffold_5 . CDS 1211605 1211760 . + 0 ID=Physo128839;Parent=Physo128839;rank=3 scaffold_5 . exon 1211605 1211760 . + . ID=Physo128839.3;Parent=Physo128839;constitutive=1;rank=3 scaffold_5 . CDS 1211846 1211932 . + 0 ID=Physo128839;Parent=Physo128839;rank=4 scaffold_5 . exon 1211846 1211932 . + . ID=Physo128839.4;Parent=Physo128839;constitutive=1;rank=4 scaffold_5 . CDS 1212004 1212102 . + 0 ID=Physo128839;Parent=Physo128839;rank=5 scaffold_5 . exon 1212004 1212166 . + . ID=Physo128839.5;Parent=Physo128839;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_5 . repeat_region 1214371 1214463 . ? . description=trf scaffold_5 . repeat_region 1214448 1214583 . ? . description=trf scaffold_5 . repeat_region 1216665 1216672 . ? . description=dust scaffold_5 . repeat_region 1217115 1217163 . ? . description=dust scaffold_5 . repeat_region 1221581 1221787 . ? . description=trf scaffold_5 ensembl protein_coding_gene 1217163 1220559 . + . ID=Physo128840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50337;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1217163 1220559 . + . ID=Physo128840;Parent=Physo128840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1217163 1218820 . + 0 ID=Physo128840;Parent=Physo128840;rank=1 scaffold_5 . exon 1217163 1218820 . + . ID=Physo128840.1;Parent=Physo128840;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1218949 1219178 . + 0 ID=Physo128840;Parent=Physo128840;rank=2 scaffold_5 . exon 1218949 1219178 . + . ID=Physo128840.2;Parent=Physo128840;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1219234 1219518 . + 0 ID=Physo128840;Parent=Physo128840;rank=3 scaffold_5 . exon 1219234 1219518 . + . ID=Physo128840.3;Parent=Physo128840;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_5 . CDS 1219697 1220559 . + 0 ID=Physo128840;Parent=Physo128840;rank=4 scaffold_5 . exon 1219697 1220559 . + . ID=Physo128840.4;Parent=Physo128840;constitutive=1;ensembl_phase=1;rank=4 scaffold_5 ensembl protein_coding_gene 1223191 1224679 . + . ID=Physo128841;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50338;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1223191 1224679 . + . ID=Physo128841;Parent=Physo128841;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1223191 1223207 . + 0 ID=Physo128841;Parent=Physo128841;rank=1 scaffold_5 . exon 1223191 1223207 . + . ID=Physo128841.1;Parent=Physo128841;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_5 . CDS 1223343 1223962 . + 0 ID=Physo128841;Parent=Physo128841;rank=2 scaffold_5 . exon 1223343 1223962 . + . ID=Physo128841.2;Parent=Physo128841;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_5 . CDS 1224129 1224679 . + 0 ID=Physo128841;Parent=Physo128841;rank=3 scaffold_5 . repeat_region 1224024 1224161 . - . description=GypsyPi-1c_I-int scaffold_5 . repeat_region 1224660 1227572 . - . description=GypsyPi-1c_I-int scaffold_5 . biological_region 1228068 1228071 0.999 - . logic_name=eponine scaffold_5 . repeat_region 1228329 1228888 . - . description=GypsyPi-1c_I-int scaffold_5 . repeat_region 1229169 1229656 . - . description=GypsyPi-1c_I-int scaffold_5 ensembl protein_coding_gene 1225194 1225559 . - . ID=Physo108310;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_50025;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1225194 1225559 . - . ID=Physo108310;Parent=Physo108310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1225194 1225559 . - 0 ID=Physo108310;Parent=Physo108310;rank=1 scaffold_5 . exon 1225194 1225559 . - . ID=Physo108310.1;Parent=Physo108310;constitutive=1;rank=1 scaffold_5 . exon 1224129 1224679 . + . ID=Physo128841.3;Parent=Physo128841;constitutive=1;ensembl_phase=1;rank=3 scaffold_5 ensembl protein_coding_gene 1225707 1229872 . - . ID=Physo128843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_50340;logic_name=jgi_physo1_1 scaffold_5 ensembl transcript 1225707 1229872 . - . ID=Physo128843;Parent=Physo128843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_5 . CDS 1225707 1228738 . - 0 ID=Physo128843;Parent=Physo128843;rank=2 scaffold_5 . exon 1225707 1228738 . - . ID=Physo128843.2;Parent=Physo128843;constitutive=1;ensembl_phase=1;rank=2 scaffold_5 . CDS 1228900 1229872 . - 0 ID=Physo128843;Parent=Physo128843;rank=1 scaffold_5 . exon 1228900 1229872 . - . ID=Physo128843.1;Parent=Physo128843;constitutive=1;ensembl_end_phase=1;rank=1 ##gff-version 3 ##sequence-region scaffold_4 1 1423541 scaffold_4 . biological_region 1135 1138 0.999 + . logic_name=eponine scaffold_4 . repeat_region 2195 2938 . ? . description=dust scaffold_4 . repeat_region 3299 3349 . ? . description=trf scaffold_4 . repeat_region 3299 3351 . ? . description=trf scaffold_4 . repeat_region 3391 3421 . ? . description=trf scaffold_4 . repeat_region 3426 3463 . ? . description=trf scaffold_4 . repeat_region 4050 4971 . ? . description=dust scaffold_4 . biological_region 5141 5142 0.999 + . logic_name=eponine scaffold_4 . biological_region 5325 5327 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 6170 6967 . - . ID=Physo108250;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40001;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 6170 6967 . - . ID=Physo108250;Parent=Physo108250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 6170 6360 . - 0 ID=Physo108250;Parent=Physo108250;rank=3 scaffold_4 . exon 6170 6360 . - . ID=Physo108250.3;Parent=Physo108250;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 6397 6827 . - 0 ID=Physo108250;Parent=Physo108250;rank=2 scaffold_4 . exon 6397 6827 . - . ID=Physo108250.2;Parent=Physo108250;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 6858 6967 . - 0 ID=Physo108250;Parent=Physo108250;rank=1 scaffold_4 . exon 6858 6967 . - . ID=Physo108250.1;Parent=Physo108250;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 1 3203 . - . ID=Physo128157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40001;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1 3203 . - . ID=Physo128157;Parent=Physo128157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1 291 . - . ID=Physo128157.3;Parent=Physo128157;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_4 . CDS 2 291 . - 0 ID=Physo128157;Parent=Physo128157;rank=3 scaffold_4 . CDS 315 2163 . - 0 ID=Physo128157;Parent=Physo128157;rank=2 scaffold_4 . exon 315 2163 . - . ID=Physo128157.2;Parent=Physo128157;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 2952 3203 . - 0 ID=Physo128157;Parent=Physo128157;rank=1 scaffold_4 . exon 2952 3203 . - . ID=Physo128157.1;Parent=Physo128157;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 7114 9926 . - . ID=Physo128159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40003;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 7114 9926 . - . ID=Physo128159;Parent=Physo128159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 7114 8078 . - . ID=Physo128159.7;Parent=Physo128159;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_4 . CDS 7115 8078 . - 0 ID=Physo128159;Parent=Physo128159;rank=7 scaffold_4 . CDS 8099 8325 . - 0 ID=Physo128159;Parent=Physo128159;rank=6 scaffold_4 . exon 8099 8325 . - . ID=Physo128159.6;Parent=Physo128159;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_4 . CDS 8364 8687 . - 0 ID=Physo128159;Parent=Physo128159;rank=5 scaffold_4 . exon 8364 8687 . - . ID=Physo128159.5;Parent=Physo128159;constitutive=1;rank=5 scaffold_4 . CDS 8787 8898 . - 0 ID=Physo128159;Parent=Physo128159;rank=4 scaffold_4 . exon 8787 8898 . - . ID=Physo128159.4;Parent=Physo128159;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 9014 9349 . - 0 ID=Physo128159;Parent=Physo128159;rank=3 scaffold_4 . exon 9014 9349 . - . ID=Physo128159.3;Parent=Physo128159;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 9412 9474 . - 0 ID=Physo128159;Parent=Physo128159;rank=2 scaffold_4 . exon 9412 9474 . - . ID=Physo128159.2;Parent=Physo128159;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 9496 9926 . - 0 ID=Physo128159;Parent=Physo128159;rank=1 scaffold_4 . exon 9496 9926 . - . ID=Physo128159.1;Parent=Physo128159;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 13965 15082 . + . ID=Physo128160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40004;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 13965 15082 . + . ID=Physo128160;Parent=Physo128160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 13965 14401 . + . ID=Physo128160.1;Parent=Physo128160;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 14273 14401 . + 0 ID=Physo128160;Parent=Physo128160;rank=1 scaffold_4 . CDS 14555 14747 . + 0 ID=Physo128160;Parent=Physo128160;rank=2 scaffold_4 . exon 14555 14747 . + . ID=Physo128160.2;Parent=Physo128160;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 14855 14930 . + 0 ID=Physo128160;Parent=Physo128160;rank=3 scaffold_4 . exon 14855 14930 . + . ID=Physo128160.3;Parent=Physo128160;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_4 . CDS 15051 15081 . + 0 ID=Physo128160;Parent=Physo128160;rank=4 scaffold_4 . exon 15051 15082 . + . ID=Physo128160.4;Parent=Physo128160;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_4 ensembl protein_coding_gene 15824 18025 . + . ID=Physo128161;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40005;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 15824 18025 . + . ID=Physo128161;Parent=Physo128161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 15824 18025 . + 0 ID=Physo128161;Parent=Physo128161;rank=1 scaffold_4 . exon 15824 18025 . + . ID=Physo128161.1;Parent=Physo128161;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 18758 20977 . + . ID=Physo128162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40006;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 18758 20977 . + . ID=Physo128162;Parent=Physo128162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 18758 18844 . + 0 ID=Physo128162;Parent=Physo128162;rank=1 scaffold_4 . exon 18758 18844 . + . ID=Physo128162.1;Parent=Physo128162;constitutive=1;rank=1 scaffold_4 . CDS 18895 19097 . + 0 ID=Physo128162;Parent=Physo128162;rank=2 scaffold_4 . exon 18895 19097 . + . ID=Physo128162.2;Parent=Physo128162;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 19154 20373 . + 0 ID=Physo128162;Parent=Physo128162;rank=3 scaffold_4 . exon 19154 20373 . + . ID=Physo128162.3;Parent=Physo128162;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 20430 20977 . + 0 ID=Physo128162;Parent=Physo128162;rank=4 scaffold_4 . repeat_region 21289 21316 . ? . description=trf scaffold_4 . repeat_region 24936 24980 . ? . description=dust scaffold_4 . repeat_region 25056 25112 . ? . description=dust scaffold_4 . biological_region 25237 25238 0.999 - . logic_name=eponine scaffold_4 . biological_region 26878 26886 0.999 - . logic_name=eponine scaffold_4 . biological_region 26891 26893 0.999 + . logic_name=eponine scaffold_4 . biological_region 26908 26909 0.999 - . logic_name=eponine scaffold_4 . biological_region 26936 26941 0.999 + . logic_name=eponine scaffold_4 . biological_region 26957 26958 0.999 - . logic_name=eponine scaffold_4 . biological_region 27597 27598 0.999 + . logic_name=eponine scaffold_4 . biological_region 27729 27731 0.999 - . logic_name=eponine scaffold_4 . exon 20430 20977 . + . ID=Physo128162.4;Parent=Physo128162;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 ensembl protein_coding_gene 23305 25292 . - . ID=Physo128163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40007;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 23305 25292 . - . ID=Physo128163;Parent=Physo128163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 23305 23443 . - 0 ID=Physo128163;Parent=Physo128163;rank=5 scaffold_4 . exon 23305 23443 . - . ID=Physo128163.5;Parent=Physo128163;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 . CDS 23553 23768 . - 0 ID=Physo128163;Parent=Physo128163;rank=4 scaffold_4 . exon 23553 23768 . - . ID=Physo128163.4;Parent=Physo128163;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_4 . CDS 23879 24007 . - 0 ID=Physo128163;Parent=Physo128163;rank=3 scaffold_4 . exon 23879 24007 . - . ID=Physo128163.3;Parent=Physo128163;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 24128 24241 . - 0 ID=Physo128163;Parent=Physo128163;rank=2 scaffold_4 . exon 24128 24241 . - . ID=Physo128163.2;Parent=Physo128163;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 24460 25292 . - 0 ID=Physo128163;Parent=Physo128163;rank=1 scaffold_4 . exon 24460 25292 . - . ID=Physo128163.1;Parent=Physo128163;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 26436 28802 . - . ID=Physo128164;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40008;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 26436 28802 . - . ID=Physo128164;Parent=Physo128164;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 26436 28802 . - 0 ID=Physo128164;Parent=Physo128164;rank=1 scaffold_4 . exon 26436 28802 . - . ID=Physo128164.1;Parent=Physo128164;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 29695 30685 . + . ID=Physo128165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40009;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 29695 30685 . + . ID=Physo128165;Parent=Physo128165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 29695 29840 . + 0 ID=Physo128165;Parent=Physo128165;rank=1 scaffold_4 . exon 29695 29840 . + . ID=Physo128165.1;Parent=Physo128165;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 29917 30010 . + 0 ID=Physo128165;Parent=Physo128165;rank=2 scaffold_4 . CDS 30095 30238 . + 0 ID=Physo128165;Parent=Physo128165;rank=3 scaffold_4 . CDS 30314 30685 . + 0 ID=Physo128165;Parent=Physo128165;rank=4 scaffold_4 . exon 29917 30010 . + . ID=Physo128165.2;Parent=Physo128165;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . exon 30095 30238 . + . ID=Physo128165.3;Parent=Physo128165;constitutive=1;rank=3 scaffold_4 . exon 30314 30685 . + . ID=Physo128165.4;Parent=Physo128165;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 30801 31270 . - . ID=Physo128166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40010;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 30801 31270 . - . ID=Physo128166;Parent=Physo128166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 30801 31065 . - 0 ID=Physo128166;Parent=Physo128166;rank=2 scaffold_4 . exon 30801 31065 . - . ID=Physo128166.2;Parent=Physo128166;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 31146 31270 . - 0 ID=Physo128166;Parent=Physo128166;rank=1 scaffold_4 . exon 31146 31270 . - . ID=Physo128166.1;Parent=Physo128166;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 31931 33501 . + . ID=Physo128167;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40011;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 31931 33501 . + . ID=Physo128167;Parent=Physo128167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 31931 32802 . + 0 ID=Physo128167;Parent=Physo128167;rank=1 scaffold_4 . exon 31931 32802 . + . ID=Physo128167.1;Parent=Physo128167;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 32830 32998 . + 0 ID=Physo128167;Parent=Physo128167;rank=2 scaffold_4 . exon 32830 32998 . + . ID=Physo128167.2;Parent=Physo128167;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 33061 33501 . + 0 ID=Physo128167;Parent=Physo128167;rank=3 scaffold_4 . exon 33061 33501 . + . ID=Physo128167.3;Parent=Physo128167;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 34812 35456 . - . ID=Physo128168;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40012;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 34812 35456 . - . ID=Physo128168;Parent=Physo128168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 34812 34993 . - 0 ID=Physo128168;Parent=Physo128168;rank=3 scaffold_4 . exon 34812 34993 . - . ID=Physo128168.3;Parent=Physo128168;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 35121 35266 . - 0 ID=Physo128168;Parent=Physo128168;rank=2 scaffold_4 . exon 35121 35266 . - . ID=Physo128168.2;Parent=Physo128168;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 35291 35337 . - 0 ID=Physo128168;Parent=Physo128168;rank=1 scaffold_4 . exon 35291 35456 . - . ID=Physo128168.1;Parent=Physo128168;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 37703 39238 . - . ID=Physo128169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40013;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 37703 39238 . - . ID=Physo128169;Parent=Physo128169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 37703 38937 . - 0 ID=Physo128169;Parent=Physo128169;rank=2 scaffold_4 . exon 37703 38937 . - . ID=Physo128169.2;Parent=Physo128169;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 39193 39238 . - 0 ID=Physo128169;Parent=Physo128169;rank=1 scaffold_4 . exon 39193 39238 . - . ID=Physo128169.1;Parent=Physo128169;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . biological_region 40646 40649 0.999 - . logic_name=eponine scaffold_4 . biological_region 41099 41100 0.999 - . logic_name=eponine scaffold_4 . biological_region 41182 41188 0.999 + . logic_name=eponine scaffold_4 . repeat_region 41323 41501 . ? . description=trf scaffold_4 . repeat_region 41374 41451 . ? . description=trf scaffold_4 . biological_region 41783 41785 0.999 + . logic_name=eponine scaffold_4 . biological_region 41848 41850 0.999 - . logic_name=eponine scaffold_4 . biological_region 42332 42337 0.999 - . logic_name=eponine scaffold_4 . biological_region 42436 42436 0.999 - . logic_name=eponine scaffold_4 . repeat_region 44814 45326 . - . description=Polinton-1_PI scaffold_4 . repeat_region 46465 46716 . - . description=Polinton-1_PI scaffold_4 . repeat_region 46962 47013 . - . description=Polinton-1_PI scaffold_4 . repeat_region 47003 47010 . ? . description=dust scaffold_4 . repeat_region 48813 51989 . ? . description=dust scaffold_4 ensembl protein_coding_gene 40533 43205 . - . ID=Physo128170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40014;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 40533 43205 . - . ID=Physo128170;Parent=Physo128170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 40533 43205 . - 0 ID=Physo128170;Parent=Physo128170;rank=1 scaffold_4 . exon 40533 43205 . - . ID=Physo128170.1;Parent=Physo128170;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 44384 44818 . + . ID=Physo128171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40015;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 44384 44818 . + . ID=Physo128171;Parent=Physo128171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 44384 44818 . + 0 ID=Physo128171;Parent=Physo128171;rank=1 scaffold_4 . exon 44384 44818 . + . ID=Physo128171.1;Parent=Physo128171;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 45280 46645 . - . ID=Physo128172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40016;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 45280 46645 . - . ID=Physo128172;Parent=Physo128172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 45280 46383 . - . ID=Physo128172.2;Parent=Physo128172;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_4 . CDS 45353 46383 . - 0 ID=Physo128172;Parent=Physo128172;rank=2 scaffold_4 . CDS 46419 46629 . - 0 ID=Physo128172;Parent=Physo128172;rank=1 scaffold_4 . exon 46419 46645 . - . ID=Physo128172.1;Parent=Physo128172;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 47591 54516 . - . ID=Physo128173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40017;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 47591 54516 . - . ID=Physo128173;Parent=Physo128173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 47591 47812 . - . ID=Physo128173.5;Parent=Physo128173;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_4 . CDS 47652 47812 . - 0 ID=Physo128173;Parent=Physo128173;rank=5 scaffold_4 . CDS 47935 48148 . - 0 ID=Physo128173;Parent=Physo128173;rank=4 scaffold_4 . exon 47935 48148 . - . ID=Physo128173.4;Parent=Physo128173;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_4 . CDS 48378 48761 . - 0 ID=Physo128173;Parent=Physo128173;rank=3 scaffold_4 . exon 48378 48761 . - . ID=Physo128173.3;Parent=Physo128173;constitutive=1;rank=3 scaffold_4 . CDS 51992 52943 . - 0 ID=Physo128173;Parent=Physo128173;rank=2 scaffold_4 . CDS 52994 54516 . - 0 ID=Physo128173;Parent=Physo128173;rank=1 scaffold_4 . exon 51992 52943 . - . ID=Physo128173.2;Parent=Physo128173;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . exon 52994 54516 . - . ID=Physo128173.1;Parent=Physo128173;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . repeat_region 59841 59849 . ? . description=dust scaffold_4 . biological_region 62045 62050 0.999 + . logic_name=eponine scaffold_4 . biological_region 63179 63180 0.999 - . logic_name=eponine scaffold_4 . biological_region 63363 63366 0.999 - . logic_name=eponine scaffold_4 . repeat_region 63630 63665 . ? . description=trf scaffold_4 . biological_region 65805 65808 0.999 - . logic_name=eponine scaffold_4 . biological_region 67584 67587 0.999 + . logic_name=eponine scaffold_4 . biological_region 67770 67771 0.999 + . logic_name=eponine scaffold_4 . biological_region 68900 68905 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 60923 61336 . + . ID=Physo128174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40018;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 60923 61336 . + . ID=Physo128174;Parent=Physo128174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 60923 61336 . + 0 ID=Physo128174;Parent=Physo128174;rank=1 scaffold_4 . exon 60923 61336 . + . ID=Physo128174.1;Parent=Physo128174;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 61484 63376 . - . ID=Physo128175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40019;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 61484 63376 . - . ID=Physo128175;Parent=Physo128175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 61484 61509 . - 0 ID=Physo128175;Parent=Physo128175;rank=3 scaffold_4 . exon 61484 61509 . - . ID=Physo128175.3;Parent=Physo128175;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 61587 61614 . - 0 ID=Physo128175;Parent=Physo128175;rank=2 scaffold_4 . exon 61587 61614 . - . ID=Physo128175.2;Parent=Physo128175;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 61733 63376 . - 0 ID=Physo128175;Parent=Physo128175;rank=1 scaffold_4 . exon 61733 63376 . - . ID=Physo128175.1;Parent=Physo128175;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 63819 64514 . - . ID=Physo128176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40020;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 63819 64514 . - . ID=Physo128176;Parent=Physo128176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 63819 64514 . - 0 ID=Physo128176;Parent=Physo128176;rank=1 scaffold_4 . exon 63819 64514 . - . ID=Physo128176.1;Parent=Physo128176;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 65573 67240 . + . ID=Physo128177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40021;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 65573 67240 . + . ID=Physo128177;Parent=Physo128177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 65573 67240 . + 0 ID=Physo128177;Parent=Physo128177;rank=1 scaffold_4 . exon 65573 67240 . + . ID=Physo128177.1;Parent=Physo128177;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 67573 69465 . + . ID=Physo128178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40022;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 67573 69465 . + . ID=Physo128178;Parent=Physo128178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 67573 69216 . + 0 ID=Physo128178;Parent=Physo128178;rank=1 scaffold_4 . exon 67573 69216 . + . ID=Physo128178.1;Parent=Physo128178;constitutive=1;rank=1 scaffold_4 . CDS 69335 69362 . + 0 ID=Physo128178;Parent=Physo128178;rank=2 scaffold_4 . exon 69335 69362 . + . ID=Physo128178.2;Parent=Physo128178;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 69440 69465 . + 0 ID=Physo128178;Parent=Physo128178;rank=3 scaffold_4 . exon 69440 69465 . + . ID=Physo128178.3;Parent=Physo128178;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 ensembl protein_coding_gene 69613 70026 . - . ID=Physo128179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40023;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 69613 70026 . - . ID=Physo128179;Parent=Physo128179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 69613 70026 . - 0 ID=Physo128179;Parent=Physo128179;rank=1 scaffold_4 . exon 69613 70026 . - . ID=Physo128179.1;Parent=Physo128179;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 71586 71903 . - . ID=Physo128180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40024;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 71586 71903 . - . ID=Physo128180;Parent=Physo128180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 71586 71903 . - 0 ID=Physo128180;Parent=Physo128180;rank=1 scaffold_4 . exon 71586 71903 . - . ID=Physo128180.1;Parent=Physo128180;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 72988 73914 . + . ID=Physo128181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40025;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 72988 73914 . + . ID=Physo128181;Parent=Physo128181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 72988 73914 . + 0 ID=Physo128181;Parent=Physo128181;rank=1 scaffold_4 . exon 72988 73914 . + . ID=Physo128181.1;Parent=Physo128181;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 74241 74855 . + . ID=Physo128182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40026;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 74241 74855 . + . ID=Physo128182;Parent=Physo128182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 74241 74757 . + 0 ID=Physo128182;Parent=Physo128182;rank=1 scaffold_4 . exon 74241 74757 . + . ID=Physo128182.1;Parent=Physo128182;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 74833 74855 . + 0 ID=Physo128182;Parent=Physo128182;rank=2 scaffold_4 . exon 74833 74855 . + . ID=Physo128182.2;Parent=Physo128182;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 77247 79778 . + . ID=Physo128183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40027;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 77247 79778 . + . ID=Physo128183;Parent=Physo128183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 77247 79778 . + 0 ID=Physo128183;Parent=Physo128183;rank=1 scaffold_4 . exon 77247 79778 . + . ID=Physo128183.1;Parent=Physo128183;constitutive=1;rank=1 scaffold_4 . repeat_region 83004 83011 . ? . description=dust scaffold_4 . biological_region 83916 83917 0.999 - . logic_name=eponine scaffold_4 . biological_region 84955 84956 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 79910 80704 . - . ID=Physo128184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40028;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 79910 80704 . - . ID=Physo128184;Parent=Physo128184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 79910 80704 . - 0 ID=Physo128184;Parent=Physo128184;rank=1 scaffold_4 . exon 79910 80704 . - . ID=Physo128184.1;Parent=Physo128184;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 84115 85248 . + . ID=Physo128185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40029;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 84115 85248 . + . ID=Physo128185;Parent=Physo128185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 84115 85248 . + 0 ID=Physo128185;Parent=Physo128185;rank=1 scaffold_4 . exon 84115 85248 . + . ID=Physo128185.1;Parent=Physo128185;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 91899 92779 . - . ID=Physo128186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40030;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 91899 92779 . - . ID=Physo128186;Parent=Physo128186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 91899 92393 . - 0 ID=Physo128186;Parent=Physo128186;rank=3 scaffold_4 . exon 91899 92393 . - . ID=Physo128186.3;Parent=Physo128186;constitutive=1;rank=3 scaffold_4 . CDS 92428 92726 . - 0 ID=Physo128186;Parent=Physo128186;rank=2 scaffold_4 . exon 92428 92726 . - . ID=Physo128186.2;Parent=Physo128186;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 92749 92779 . - 0 ID=Physo128186;Parent=Physo128186;rank=1 scaffold_4 . exon 92749 92779 . - . ID=Physo128186.1;Parent=Physo128186;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 92972 95074 . + . ID=Physo128187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40031;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 92972 95074 . + . ID=Physo128187;Parent=Physo128187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 92972 95074 . + 0 ID=Physo128187;Parent=Physo128187;rank=1 scaffold_4 . exon 92972 95074 . + . ID=Physo128187.1;Parent=Physo128187;constitutive=1;rank=1 scaffold_4 . biological_region 106382 106388 0.999 + . logic_name=eponine scaffold_4 ensembl snoRNA_gene 102864 103064 . - . ID=EPrPSOG00000000010;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_4 ensembl snoRNA 102864 103064 . - . ID=EPrPSOT00000000010;Parent=EPrPSOG00000000010;biotype=snoRNA;logic_name=ncrna_eg scaffold_4 ensembl snoRNA_gene 107710 107934 . + . ID=EPrPSOG00000000297;biotype=snoRNA;description=Small nucleolar RNA U3 [Source:RFAM%3BAcc:RF00012];external_name=U3;logic_name=ncrna_eg scaffold_4 ensembl snoRNA 107710 107934 . + . ID=EPrPSOT00000000297;Parent=EPrPSOG00000000297;biotype=snoRNA;logic_name=ncrna_eg scaffold_4 . exon 102864 103064 . - . ID=EPrPSOE00000000010;Parent=EPrPSOT00000000010;constitutive=1;rank=1 scaffold_4 . exon 107710 107934 . + . ID=EPrPSOE00000000297;Parent=EPrPSOT00000000297;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 101335 102204 . + . ID=Physo128188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40032;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 101335 102204 . + . ID=Physo128188;Parent=Physo128188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 101335 101348 . + 0 ID=Physo128188;Parent=Physo128188;rank=1 scaffold_4 . exon 101335 101348 . + . ID=Physo128188.1;Parent=Physo128188;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 101483 101492 . + 0 ID=Physo128188;Parent=Physo128188;rank=2 scaffold_4 . exon 101483 101492 . + . ID=Physo128188.2;Parent=Physo128188;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 101551 102204 . + 0 ID=Physo128188;Parent=Physo128188;rank=3 scaffold_4 . exon 101551 102204 . + . ID=Physo128188.3;Parent=Physo128188;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 104524 105759 . - . ID=Physo128189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40033;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 104524 105759 . - . ID=Physo128189;Parent=Physo128189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 104524 105759 . - 0 ID=Physo128189;Parent=Physo128189;rank=1 scaffold_4 . exon 104524 105759 . - . ID=Physo128189.1;Parent=Physo128189;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 108582 109784 . - . ID=Physo128190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40034;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 108582 109784 . - . ID=Physo128190;Parent=Physo128190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 108582 109784 . - 0 ID=Physo128190;Parent=Physo128190;rank=1 scaffold_4 . exon 108582 109784 . - . ID=Physo128190.1;Parent=Physo128190;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 114581 115244 . - . ID=Physo111150;biotype=protein_coding;external_name=estExt_Genewise1.C_40312;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 114581 115244 . - . ID=Physo111150;Parent=Physo111150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 114581 114733 . - . ID=Physo111150.2;Parent=Physo111150;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_4 . CDS 114582 114733 . - 0 ID=Physo111150;Parent=Physo111150;rank=2 scaffold_4 . CDS 114845 115094 . - 0 ID=Physo111150;Parent=Physo111150;rank=1 scaffold_4 . exon 114845 115244 . - . ID=Physo111150.1;Parent=Physo111150;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 110669 111826 . - . ID=Physo128191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40035;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 110669 111826 . - . ID=Physo128191;Parent=Physo128191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 110669 111826 . - 0 ID=Physo128191;Parent=Physo128191;rank=1 scaffold_4 . exon 110669 111826 . - . ID=Physo128191.1;Parent=Physo128191;constitutive=1;rank=1 scaffold_4 . biological_region 121944 121944 0.999 + . logic_name=eponine scaffold_4 . biological_region 124623 124625 0.999 + . logic_name=eponine scaffold_4 . biological_region 124825 124827 0.999 + . logic_name=eponine scaffold_4 . biological_region 124866 124871 0.999 + . logic_name=eponine scaffold_4 . repeat_region 125944 125951 . ? . description=dust scaffold_4 ensembl protein_coding_gene 120050 120499 . + . ID=Physo128192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40036;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 120050 120499 . + . ID=Physo128192;Parent=Physo128192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 120050 120097 . + . ID=Physo128192.1;Parent=Physo128192;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 120052 120097 . + 0 ID=Physo128192;Parent=Physo128192;rank=1 scaffold_4 . CDS 120237 120499 . + 0 ID=Physo128192;Parent=Physo128192;rank=2 scaffold_4 . exon 120237 120499 . + . ID=Physo128192.2;Parent=Physo128192;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 121603 122811 . + . ID=Physo128193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40037;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 121603 122811 . + . ID=Physo128193;Parent=Physo128193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 121603 122811 . + 0 ID=Physo128193;Parent=Physo128193;rank=1 scaffold_4 . exon 121603 122811 . + . ID=Physo128193.1;Parent=Physo128193;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 124578 125750 . + . ID=Physo128194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40038;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 124578 125750 . + . ID=Physo128194;Parent=Physo128194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 124578 125750 . + 0 ID=Physo128194;Parent=Physo128194;rank=1 scaffold_4 . exon 124578 125750 . + . ID=Physo128194.1;Parent=Physo128194;constitutive=1;rank=1 scaffold_4 . repeat_region 135911 135972 . ? . description=trf scaffold_4 . repeat_region 136091 136196 . ? . description=trf scaffold_4 . repeat_region 136365 136408 . ? . description=trf scaffold_4 . repeat_region 138361 138458 . ? . description=trf scaffold_4 ensembl tRNA_gene 134497 134568 . - . ID=EPrPSOG00000000133;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_4 ensembl transcript 134497 134568 . - . ID=EPrPSOT00000000133;Parent=EPrPSOG00000000133;biotype=tRNA;logic_name=ncrna_eg scaffold_4 . exon 134497 134568 . - . ID=EPrPSOE00000000133;Parent=EPrPSOT00000000133;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 130411 131711 . - . ID=Physo128195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40039;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 130411 131711 . - . ID=Physo128195;Parent=Physo128195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 130411 131046 . - 0 ID=Physo128195;Parent=Physo128195;rank=2 scaffold_4 . exon 130411 131046 . - . ID=Physo128195.2;Parent=Physo128195;constitutive=1;rank=2 scaffold_4 . CDS 131116 131706 . - 0 ID=Physo128195;Parent=Physo128195;rank=1 scaffold_4 . exon 131116 131711 . - . ID=Physo128195.1;Parent=Physo128195;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 132704 134188 . + . ID=Physo128196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40040;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 132704 134188 . + . ID=Physo128196;Parent=Physo128196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 132704 133705 . + 0 ID=Physo128196;Parent=Physo128196;rank=1 scaffold_4 . exon 132704 133705 . + . ID=Physo128196.1;Parent=Physo128196;constitutive=1;rank=1 scaffold_4 . CDS 133817 134188 . + 0 ID=Physo128196;Parent=Physo128196;rank=2 scaffold_4 . exon 133817 134188 . + . ID=Physo128196.2;Parent=Physo128196;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 135293 136624 . - . ID=Physo128197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40041;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 135293 136624 . - . ID=Physo128197;Parent=Physo128197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 135293 136624 . - . ID=Physo128197.1;Parent=Physo128197;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 135665 136339 . - 0 ID=Physo128197;Parent=Physo128197;rank=1 scaffold_4 . repeat_region 139718 148290 . ? . description=dust scaffold_4 . repeat_region 148291 153386 . ? . description=dust scaffold_4 . repeat_region 153387 154193 . + . description=Polinton-1_PI scaffold_4 . repeat_region 154253 155225 . + . description=Polinton-1_PI scaffold_4 . repeat_region 156951 157456 . + . description=Polinton-1_PI scaffold_4 . repeat_region 157550 157905 . + . description=Polinton-1_PI scaffold_4 . repeat_region 157906 160646 . ? . description=dust scaffold_4 . repeat_region 161714 161763 . ? . description=dust scaffold_4 . repeat_region 166155 166167 . ? . description=dust scaffold_4 . repeat_region 167725 168067 . ? . description=dust scaffold_4 . repeat_region 161765 173736 . + . description=Polinton-1_PI scaffold_4 . repeat_region 175728 175881 . ? . description=trf scaffold_4 . repeat_region 176981 177134 . ? . description=trf scaffold_4 . repeat_region 178602 178673 . - . description=Polinton-1_PI scaffold_4 . repeat_region 178845 178908 . + . description=Polinton-1_PI scaffold_4 ensembl protein_coding_gene 173671 174264 . + . ID=Physo128198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40042;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 173671 174264 . + . ID=Physo128198;Parent=Physo128198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 173671 173682 . + 0 ID=Physo128198;Parent=Physo128198;rank=1 scaffold_4 . exon 173671 173682 . + . ID=Physo128198.1;Parent=Physo128198;constitutive=1;rank=1 scaffold_4 . CDS 173743 174264 . + 0 ID=Physo128198;Parent=Physo128198;rank=2 scaffold_4 . exon 173743 174264 . + . ID=Physo128198.2;Parent=Physo128198;constitutive=1;rank=2 scaffold_4 . repeat_region 180282 180291 . ? . description=dust scaffold_4 . repeat_region 187381 187430 . ? . description=dust scaffold_4 . repeat_region 190037 190113 . ? . description=trf scaffold_4 . repeat_region 193487 193534 . ? . description=trf scaffold_4 . repeat_region 200913 200920 . ? . description=dust scaffold_4 . repeat_region 204423 204537 . + . description=Polinton-1_PI scaffold_4 . repeat_region 212381 212424 . ? . description=trf scaffold_4 . repeat_region 212817 212878 . ? . description=trf scaffold_4 . biological_region 214283 214286 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 212165 213496 . + . ID=Physo128199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40043;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 212165 213496 . + . ID=Physo128199;Parent=Physo128199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 212165 213496 . + 0 ID=Physo128199;Parent=Physo128199;rank=1 scaffold_4 . exon 212165 213496 . + . ID=Physo128199.1;Parent=Physo128199;constitutive=1;rank=1 scaffold_4 . repeat_region 220339 220346 . ? . description=dust scaffold_4 . repeat_region 226496 226504 . ? . description=dust scaffold_4 ensembl protein_coding_gene 221862 222635 . + . ID=Physo128200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40044;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 221862 222635 . + . ID=Physo128200;Parent=Physo128200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 221862 221986 . + 0 ID=Physo128200;Parent=Physo128200;rank=1 scaffold_4 . exon 221862 221986 . + . ID=Physo128200.1;Parent=Physo128200;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 222101 222635 . + 0 ID=Physo128200;Parent=Physo128200;rank=2 scaffold_4 . exon 222101 222635 . + . ID=Physo128200.2;Parent=Physo128200;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 224012 224554 . + . ID=Physo128201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40045;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 224012 224554 . + . ID=Physo128201;Parent=Physo128201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 224012 224554 . + 0 ID=Physo128201;Parent=Physo128201;rank=1 scaffold_4 . exon 224012 224554 . + . ID=Physo128201.1;Parent=Physo128201;constitutive=1;rank=1 scaffold_4 . repeat_region 229822 230047 . ? . description=trf scaffold_4 . repeat_region 231522 231741 . ? . description=trf scaffold_4 . repeat_region 238223 238275 . ? . description=trf scaffold_4 ensembl protein_coding_gene 234115 236391 . - . ID=Physo128202;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40046;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 234115 236391 . - . ID=Physo128202;Parent=Physo128202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 234115 234447 . - 0 ID=Physo128202;Parent=Physo128202;rank=4 scaffold_4 . exon 234115 234447 . - . ID=Physo128202.4;Parent=Physo128202;constitutive=1;rank=4 scaffold_4 . CDS 234642 234678 . - 0 ID=Physo128202;Parent=Physo128202;rank=3 scaffold_4 . exon 234642 234678 . - . ID=Physo128202.3;Parent=Physo128202;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 235340 235602 . - 0 ID=Physo128202;Parent=Physo128202;rank=2 scaffold_4 . exon 235340 235602 . - . ID=Physo128202.2;Parent=Physo128202;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 235759 236391 . - 0 ID=Physo128202;Parent=Physo128202;rank=1 scaffold_4 . exon 235759 236391 . - . ID=Physo128202.1;Parent=Physo128202;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 237852 238178 . - . ID=Physo128203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40047;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 237852 238178 . - . ID=Physo128203;Parent=Physo128203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 237852 238178 . - 0 ID=Physo128203;Parent=Physo128203;rank=1 scaffold_4 . exon 237852 238178 . - . ID=Physo128203.1;Parent=Physo128203;constitutive=1;rank=1 scaffold_4 . biological_region 242028 242030 0.999 - . logic_name=eponine scaffold_4 . repeat_region 242052 242059 . ? . description=dust scaffold_4 . repeat_region 243220 243228 . ? . description=dust scaffold_4 . repeat_region 245988 246002 . ? . description=dust scaffold_4 . biological_region 248335 248338 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 241068 241577 . - . ID=Physo128204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40048;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 241068 241577 . - . ID=Physo128204;Parent=Physo128204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 241068 241577 . - 0 ID=Physo128204;Parent=Physo128204;rank=1 scaffold_4 . exon 241068 241577 . - . ID=Physo128204.1;Parent=Physo128204;constitutive=1;rank=1 scaffold_4 . repeat_region 251699 251883 . ? . description=trf scaffold_4 . repeat_region 252891 252942 . + . description=Polinton-1_PI scaffold_4 . repeat_region 253179 253430 . + . description=Polinton-1_PI scaffold_4 . repeat_region 253608 253637 . + . description=Polinton-1_PI scaffold_4 . repeat_region 254574 260168 . + . description=Polinton-1_PI scaffold_4 ensembl protein_coding_gene 253250 254552 . + . ID=Physo108251;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40002;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 253250 254552 . + . ID=Physo108251;Parent=Physo108251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 253250 254552 . + . ID=Physo108251.1;Parent=Physo108251;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 253266 254552 . + 0 ID=Physo108251;Parent=Physo108251;rank=1 scaffold_4 ensembl protein_coding_gene 249904 252313 . + . ID=Physo128205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40049;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 249904 252313 . + . ID=Physo128205;Parent=Physo128205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 249904 251526 . + 0 ID=Physo128205;Parent=Physo128205;rank=1 scaffold_4 . exon 249904 251526 . + . ID=Physo128205.1;Parent=Physo128205;constitutive=1;rank=1 scaffold_4 . CDS 251672 251969 . + 0 ID=Physo128205;Parent=Physo128205;rank=2 scaffold_4 . exon 251672 251969 . + . ID=Physo128205.2;Parent=Physo128205;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 252092 252252 . + 0 ID=Physo128205;Parent=Physo128205;rank=3 scaffold_4 . exon 252092 252313 . + . ID=Physo128205.3;Parent=Physo128205;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_4 . repeat_region 260954 260962 . ? . description=dust scaffold_4 . repeat_region 261073 261080 . ? . description=dust scaffold_4 . repeat_region 266939 269852 . + . description=Polinton-1_PI scaffold_4 . repeat_region 270074 270390 . - . description=Polinton-1_PI scaffold_4 . repeat_region 271021 271127 . - . description=Polinton-1_PI scaffold_4 . biological_region 277240 277242 0.999 + . logic_name=eponine scaffold_4 . biological_region 277549 277551 0.999 - . logic_name=eponine scaffold_4 . biological_region 277585 277588 0.999 + . logic_name=eponine scaffold_4 . biological_region 277625 277628 0.999 + . logic_name=eponine scaffold_4 . biological_region 277743 277752 0.999 + . logic_name=eponine scaffold_4 . biological_region 277757 277759 0.999 - . logic_name=eponine scaffold_4 . biological_region 277769 277775 0.999 + . logic_name=eponine scaffold_4 . biological_region 277778 277779 0.999 - . logic_name=eponine scaffold_4 . biological_region 277791 277792 0.999 - . logic_name=eponine scaffold_4 . biological_region 277806 277811 0.999 - . logic_name=eponine scaffold_4 . biological_region 277826 277826 0.999 - . logic_name=eponine scaffold_4 . biological_region 277885 277890 0.999 - . logic_name=eponine scaffold_4 . biological_region 278314 278315 0.999 + . logic_name=eponine scaffold_4 . repeat_region 278539 278575 . ? . description=trf scaffold_4 ensembl protein_coding_gene 275629 276666 . + . ID=Physo108252;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40003;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 275629 276666 . + . ID=Physo108252;Parent=Physo108252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 275629 276666 . + 0 ID=Physo108252;Parent=Physo108252;rank=1 scaffold_4 . exon 275629 276666 . + . ID=Physo108252.1;Parent=Physo108252;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 273595 274640 . + . ID=Physo128207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40051;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 273595 274640 . + . ID=Physo128207;Parent=Physo128207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 273595 274302 . + 0 ID=Physo128207;Parent=Physo128207;rank=1 scaffold_4 . exon 273595 274302 . + . ID=Physo128207.1;Parent=Physo128207;constitutive=1;rank=1 scaffold_4 . CDS 274638 274640 . + 0 ID=Physo128207;Parent=Physo128207;rank=2 scaffold_4 . exon 274638 274640 . + . ID=Physo128207.2;Parent=Physo128207;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 276724 278050 . - . ID=Physo128209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40053;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 276724 278050 . - . ID=Physo128209;Parent=Physo128209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 276724 278050 . - . ID=Physo128209.1;Parent=Physo128209;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_4 . CDS 276824 278050 . - 0 ID=Physo128209;Parent=Physo128209;rank=1 scaffold_4 . repeat_region 279196 279206 . ? . description=dust scaffold_4 ensembl protein_coding_gene 283412 284090 . + . ID=Physo128210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40054;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 283412 284090 . + . ID=Physo128210;Parent=Physo128210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 283412 283718 . + 0 ID=Physo128210;Parent=Physo128210;rank=1 scaffold_4 . exon 283412 283718 . + . ID=Physo128210.1;Parent=Physo128210;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 283761 284006 . + 0 ID=Physo128210;Parent=Physo128210;rank=2 scaffold_4 . exon 283761 284006 . + . ID=Physo128210.2;Parent=Physo128210;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 284041 284090 . + 0 ID=Physo128210;Parent=Physo128210;rank=3 scaffold_4 . exon 284041 284090 . + . ID=Physo128210.3;Parent=Physo128210;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . repeat_region 292966 292990 . ? . description=trf scaffold_4 . repeat_region 293318 293363 . ? . description=trf scaffold_4 . repeat_region 293318 293378 . ? . description=trf scaffold_4 . repeat_region 293332 293363 . ? . description=trf scaffold_4 . biological_region 295142 295148 0.999 + . logic_name=eponine scaffold_4 . biological_region 295241 295242 0.999 + . logic_name=eponine scaffold_4 . biological_region 295267 295271 0.999 - . logic_name=eponine scaffold_4 . biological_region 295286 295291 0.999 + . logic_name=eponine scaffold_4 . biological_region 295290 295296 0.999 - . logic_name=eponine scaffold_4 . biological_region 295347 295347 0.999 + . logic_name=eponine scaffold_4 . biological_region 295735 295737 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 295638 296566 . - . ID=Physo108253;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40004;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 295638 296566 . - . ID=Physo108253;Parent=Physo108253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 295638 296495 . - 0 ID=Physo108253;Parent=Physo108253;rank=1 scaffold_4 . exon 295638 296566 . - . ID=Physo108253.1;Parent=Physo108253;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 296570 296869 . - . ID=Physo110848;biotype=protein_coding;external_name=estExt_Genewise1.C_40010;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 296570 296869 . - . ID=Physo110848;Parent=Physo110848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 296570 296869 . - . ID=Physo110848.1;Parent=Physo110848;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 296571 296867 . - 0 ID=Physo110848;Parent=Physo110848;rank=1 scaffold_4 . repeat_region 299217 299225 . ? . description=dust scaffold_4 . repeat_region 302393 302536 . ? . description=dust scaffold_4 . repeat_region 303612 303703 . ? . description=dust scaffold_4 . repeat_region 308190 308197 . ? . description=dust scaffold_4 ensembl protein_coding_gene 299876 300307 . + . ID=Physo128213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40057;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 299876 300307 . + . ID=Physo128213;Parent=Physo128213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 299876 299887 . + 0 ID=Physo128213;Parent=Physo128213;rank=1 scaffold_4 . exon 299876 299887 . + . ID=Physo128213.1;Parent=Physo128213;constitutive=1;rank=1 scaffold_4 . CDS 299929 299959 . + 0 ID=Physo128213;Parent=Physo128213;rank=2 scaffold_4 . exon 299929 299959 . + . ID=Physo128213.2;Parent=Physo128213;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 300012 300307 . + 0 ID=Physo128213;Parent=Physo128213;rank=3 scaffold_4 . exon 300012 300307 . + . ID=Physo128213.3;Parent=Physo128213;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . biological_region 312225 312227 0.999 - . logic_name=eponine scaffold_4 . biological_region 315487 315489 0.999 + . logic_name=eponine scaffold_4 . repeat_region 316124 316306 . - . description=GypsyPi-1c_LTR scaffold_4 . repeat_region 316428 316750 . - . description=GypsyPi-1c_I-int scaffold_4 . biological_region 316681 316684 0.999 + . logic_name=eponine scaffold_4 . biological_region 316877 316882 0.999 + . logic_name=eponine scaffold_4 . repeat_region 317062 319691 . - . description=GypsyPi-1c_I-int scaffold_4 . biological_region 317652 317655 0.999 - . logic_name=eponine scaffold_4 . biological_region 317702 317704 0.999 - . logic_name=eponine scaffold_4 . biological_region 318384 318388 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 311944 313718 . - . ID=Physo128214;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40058;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 311944 313718 . - . ID=Physo128214;Parent=Physo128214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 311944 312236 . - 0 ID=Physo128214;Parent=Physo128214;rank=5 scaffold_4 . exon 311944 312236 . - . ID=Physo128214.5;Parent=Physo128214;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 312415 312707 . - 0 ID=Physo128214;Parent=Physo128214;rank=4 scaffold_4 . exon 312415 312707 . - . ID=Physo128214.4;Parent=Physo128214;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 312789 313091 . - 0 ID=Physo128214;Parent=Physo128214;rank=3 scaffold_4 . exon 312789 313091 . - . ID=Physo128214.3;Parent=Physo128214;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 313124 313294 . - 0 ID=Physo128214;Parent=Physo128214;rank=2 scaffold_4 . exon 313124 313294 . - . ID=Physo128214.2;Parent=Physo128214;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 313369 313718 . - 0 ID=Physo128214;Parent=Physo128214;rank=1 scaffold_4 . exon 313369 313718 . - . ID=Physo128214.1;Parent=Physo128214;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 316614 317811 . + . ID=Physo128215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40059;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 316614 317811 . + . ID=Physo128215;Parent=Physo128215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 316614 316911 . + 0 ID=Physo128215;Parent=Physo128215;rank=1 scaffold_4 . exon 316614 316911 . + . ID=Physo128215.1;Parent=Physo128215;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 317159 317811 . + 0 ID=Physo128215;Parent=Physo128215;rank=2 scaffold_4 . exon 317159 317811 . + . ID=Physo128215.2;Parent=Physo128215;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 318094 322466 . - . ID=Physo128216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40060;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 318094 322466 . - . ID=Physo128216;Parent=Physo128216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 318094 318102 . - 0 ID=Physo128216;Parent=Physo128216;rank=6 scaffold_4 . exon 318094 318102 . - . ID=Physo128216.6;Parent=Physo128216;constitutive=1;rank=6 scaffold_4 . CDS 318363 318592 . - 0 ID=Physo128216;Parent=Physo128216;rank=5 scaffold_4 . exon 318363 318592 . - . ID=Physo128216.5;Parent=Physo128216;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 318788 319567 . - 0 ID=Physo128216;Parent=Physo128216;rank=4 scaffold_4 . CDS 319889 319974 . - 0 ID=Physo128216;Parent=Physo128216;rank=3 scaffold_4 . CDS 319994 321420 . - 0 ID=Physo128216;Parent=Physo128216;rank=2 scaffold_4 . CDS 321723 322466 . - 0 ID=Physo128216;Parent=Physo128216;rank=1 scaffold_4 . repeat_region 319716 319765 . ? . description=dust scaffold_4 . repeat_region 320433 320542 . ? . description=trf scaffold_4 . repeat_region 320501 320571 . ? . description=trf scaffold_4 . repeat_region 320552 320719 . ? . description=trf scaffold_4 . exon 318788 319567 . - . ID=Physo128216.4;Parent=Physo128216;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_4 . exon 319889 319974 . - . ID=Physo128216.3;Parent=Physo128216;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . exon 319994 321420 . - . ID=Physo128216.2;Parent=Physo128216;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . exon 321723 322466 . - . ID=Physo128216.1;Parent=Physo128216;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 325195 325814 . + . ID=Physo128217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40061;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 325195 325814 . + . ID=Physo128217;Parent=Physo128217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 325195 325510 . + 0 ID=Physo128217;Parent=Physo128217;rank=1 scaffold_4 . exon 325195 325510 . + . ID=Physo128217.1;Parent=Physo128217;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 325807 325814 . + 0 ID=Physo128217;Parent=Physo128217;rank=2 scaffold_4 . exon 325807 325814 . + . ID=Physo128217.2;Parent=Physo128217;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . biological_region 328769 328770 0.999 - . logic_name=eponine scaffold_4 . biological_region 336128 336134 0.999 + . logic_name=eponine scaffold_4 . biological_region 336166 336175 0.999 - . logic_name=eponine scaffold_4 . biological_region 336174 336189 0.999 + . logic_name=eponine scaffold_4 . biological_region 336199 336201 0.999 - . logic_name=eponine scaffold_4 . biological_region 336205 336207 0.999 + . logic_name=eponine scaffold_4 . biological_region 336223 336229 0.999 + . logic_name=eponine scaffold_4 . biological_region 336225 336231 0.999 - . logic_name=eponine scaffold_4 . biological_region 336234 336238 0.999 - . logic_name=eponine scaffold_4 . biological_region 336541 336545 0.999 + . logic_name=eponine scaffold_4 . biological_region 336689 336693 0.999 + . logic_name=eponine scaffold_4 . biological_region 336920 336923 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 333704 336325 . - . ID=Physo108254;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40005;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 333704 336325 . - . ID=Physo108254;Parent=Physo108254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 333704 334861 . - 0 ID=Physo108254;Parent=Physo108254;rank=2 scaffold_4 . exon 333704 334861 . - . ID=Physo108254.2;Parent=Physo108254;constitutive=1;rank=2 scaffold_4 . CDS 334943 336325 . - 0 ID=Physo108254;Parent=Physo108254;rank=1 scaffold_4 . exon 334943 336325 . - . ID=Physo108254.1;Parent=Physo108254;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 328679 331091 . + . ID=Physo128218;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40062;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 328679 331091 . + . ID=Physo128218;Parent=Physo128218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 328679 328687 . + 0 ID=Physo128218;Parent=Physo128218;rank=1 scaffold_4 . exon 328679 328687 . + . ID=Physo128218.1;Parent=Physo128218;constitutive=1;rank=1 scaffold_4 . CDS 328821 329837 . + 0 ID=Physo128218;Parent=Physo128218;rank=2 scaffold_4 . exon 328821 329837 . + . ID=Physo128218.2;Parent=Physo128218;constitutive=1;rank=2 scaffold_4 . CDS 329908 330013 . + 0 ID=Physo128218;Parent=Physo128218;rank=3 scaffold_4 . exon 329908 330013 . + . ID=Physo128218.3;Parent=Physo128218;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . CDS 330090 330433 . + 0 ID=Physo128218;Parent=Physo128218;rank=4 scaffold_4 . exon 330090 330433 . + . ID=Physo128218.4;Parent=Physo128218;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 330525 330575 . + 0 ID=Physo128218;Parent=Physo128218;rank=5 scaffold_4 . exon 330525 330575 . + . ID=Physo128218.5;Parent=Physo128218;constitutive=1;rank=5 scaffold_4 . CDS 330684 330821 . + 0 ID=Physo128218;Parent=Physo128218;rank=6 scaffold_4 . exon 330684 330821 . + . ID=Physo128218.6;Parent=Physo128218;constitutive=1;rank=6 scaffold_4 . CDS 330894 331091 . + 0 ID=Physo128218;Parent=Physo128218;rank=7 scaffold_4 . exon 330894 331091 . + . ID=Physo128218.7;Parent=Physo128218;constitutive=1;rank=7 scaffold_4 ensembl protein_coding_gene 336478 341260 . - . ID=Physo128220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40064;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 336478 341260 . - . ID=Physo128220;Parent=Physo128220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 336478 341260 . - . ID=Physo128220.1;Parent=Physo128220;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_4 . CDS 336533 341260 . - 0 ID=Physo128220;Parent=Physo128220;rank=1 scaffold_4 . repeat_region 345686 345704 . ? . description=dust scaffold_4 . repeat_region 348158 348168 . ? . description=dust scaffold_4 ensembl protein_coding_gene 341422 341889 . + . ID=Physo128221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40065;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 341422 341889 . + . ID=Physo128221;Parent=Physo128221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 341422 341889 . + 0 ID=Physo128221;Parent=Physo128221;rank=1 scaffold_4 . exon 341422 341889 . + . ID=Physo128221.1;Parent=Physo128221;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 348200 349999 . + . ID=Physo128222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40066;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 348200 349999 . + . ID=Physo128222;Parent=Physo128222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 348200 348879 . + 0 ID=Physo128222;Parent=Physo128222;rank=1 scaffold_4 . exon 348200 348879 . + . ID=Physo128222.1;Parent=Physo128222;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 349264 349724 . + 0 ID=Physo128222;Parent=Physo128222;rank=2 scaffold_4 . CDS 349980 349999 . + 0 ID=Physo128222;Parent=Physo128222;rank=3 scaffold_4 . repeat_region 348488 348566 . + . description=(CGA)n scaffold_4 . biological_region 348514 348517 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 356227 356781 . + . ID=Physo110854;biotype=protein_coding;external_name=estExt_Genewise1.C_40016;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 356227 356781 . + . ID=Physo110854;Parent=Physo110854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 356227 356781 . + . ID=Physo110854.1;Parent=Physo110854;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 356503 356781 . + 0 ID=Physo110854;Parent=Physo110854;rank=1 scaffold_4 . exon 349264 349724 . + . ID=Physo128222.2;Parent=Physo128222;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . exon 349980 349999 . + . ID=Physo128222.3;Parent=Physo128222;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 ensembl protein_coding_gene 350973 353929 . + . ID=Physo128223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40067;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 350973 353929 . + . ID=Physo128223;Parent=Physo128223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 350973 350985 . + 0 ID=Physo128223;Parent=Physo128223;rank=1 scaffold_4 . exon 350973 350985 . + . ID=Physo128223.1;Parent=Physo128223;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 351237 351376 . + 0 ID=Physo128223;Parent=Physo128223;rank=2 scaffold_4 . exon 351237 351376 . + . ID=Physo128223.2;Parent=Physo128223;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 351575 351786 . + 0 ID=Physo128223;Parent=Physo128223;rank=3 scaffold_4 . exon 351575 351786 . + . ID=Physo128223.3;Parent=Physo128223;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 352364 352448 . + 0 ID=Physo128223;Parent=Physo128223;rank=4 scaffold_4 . exon 352364 352448 . + . ID=Physo128223.4;Parent=Physo128223;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 352722 352878 . + 0 ID=Physo128223;Parent=Physo128223;rank=5 scaffold_4 . exon 352722 352878 . + . ID=Physo128223.5;Parent=Physo128223;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_4 . CDS 353276 353451 . + 0 ID=Physo128223;Parent=Physo128223;rank=6 scaffold_4 . exon 353276 353451 . + . ID=Physo128223.6;Parent=Physo128223;constitutive=1;ensembl_phase=1;rank=6 scaffold_4 . CDS 353608 353832 . + 0 ID=Physo128223;Parent=Physo128223;rank=7 scaffold_4 . exon 353608 353832 . + . ID=Physo128223.7;Parent=Physo128223;constitutive=1;rank=7 scaffold_4 . CDS 353918 353929 . + 0 ID=Physo128223;Parent=Physo128223;rank=8 scaffold_4 . exon 353918 353929 . + . ID=Physo128223.8;Parent=Physo128223;constitutive=1;rank=8 scaffold_4 . repeat_region 359462 359469 . ? . description=dust scaffold_4 . repeat_region 359839 359850 . ? . description=dust scaffold_4 . repeat_region 360324 360349 . ? . description=trf scaffold_4 . repeat_region 361344 361456 . ? . description=trf scaffold_4 . repeat_region 364331 364338 . ? . description=dust scaffold_4 . biological_region 369503 369503 0.999 - . logic_name=eponine scaffold_4 . biological_region 374248 374251 0.999 + . logic_name=eponine scaffold_4 . biological_region 374257 374258 0.999 - . logic_name=eponine scaffold_4 . biological_region 374301 374307 0.999 - . logic_name=eponine scaffold_4 . biological_region 375408 375412 0.999 - . logic_name=eponine scaffold_4 . biological_region 375539 375541 0.999 - . logic_name=eponine scaffold_4 . biological_region 376038 376040 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 375181 376701 . + . ID=Physo108255;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40006;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 375181 376701 . + . ID=Physo108255;Parent=Physo108255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 375181 376701 . + 0 ID=Physo108255;Parent=Physo108255;rank=1 scaffold_4 . exon 375181 376701 . + . ID=Physo108255.1;Parent=Physo108255;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 372719 374462 . - . ID=Physo128224;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40068;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 372719 374462 . - . ID=Physo128224;Parent=Physo128224;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 372719 373096 . - . ID=Physo128224.5;Parent=Physo128224;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_4 . CDS 372795 373096 . - 0 ID=Physo128224;Parent=Physo128224;rank=5 scaffold_4 . CDS 373178 373438 . - 0 ID=Physo128224;Parent=Physo128224;rank=4 scaffold_4 . exon 373178 373438 . - . ID=Physo128224.4;Parent=Physo128224;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 373506 373565 . - 0 ID=Physo128224;Parent=Physo128224;rank=3 scaffold_4 . exon 373506 373565 . - . ID=Physo128224.3;Parent=Physo128224;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 373639 373786 . - 0 ID=Physo128224;Parent=Physo128224;rank=2 scaffold_4 . exon 373639 373786 . - . ID=Physo128224.2;Parent=Physo128224;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 373860 374462 . - 0 ID=Physo128224;Parent=Physo128224;rank=1 scaffold_4 . exon 373860 374462 . - . ID=Physo128224.1;Parent=Physo128224;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 377245 381314 . + . ID=Physo155434;biotype=protein_coding;external_name=C_scaffold_4000002;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 377245 381314 . + . ID=Physo155434;Parent=Physo155434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 377245 377513 . + 0 ID=Physo155434;Parent=Physo155434;rank=1 scaffold_4 . exon 377245 377513 . + . ID=Physo155434.1;Parent=Physo155434;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 377687 377766 . + 0 ID=Physo155434;Parent=Physo155434;rank=2 scaffold_4 . exon 377687 377766 . + . ID=Physo155434.2;Parent=Physo155434;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 377838 377929 . + 0 ID=Physo155434;Parent=Physo155434;rank=3 scaffold_4 . exon 377838 377929 . + . ID=Physo155434.3;Parent=Physo155434;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 377996 378649 . + 0 ID=Physo155434;Parent=Physo155434;rank=4 scaffold_4 . exon 377996 378649 . + . ID=Physo155434.4;Parent=Physo155434;constitutive=1;rank=4 scaffold_4 . CDS 378785 378849 . + 0 ID=Physo155434;Parent=Physo155434;rank=5 scaffold_4 . CDS 378871 378931 . + 0 ID=Physo155434;Parent=Physo155434;rank=6 scaffold_4 . CDS 379011 379106 . + 0 ID=Physo155434;Parent=Physo155434;rank=7 scaffold_4 . CDS 379172 379229 . + 0 ID=Physo155434;Parent=Physo155434;rank=8 scaffold_4 . CDS 379290 379449 . + 0 ID=Physo155434;Parent=Physo155434;rank=9 scaffold_4 . CDS 379536 379617 . + 0 ID=Physo155434;Parent=Physo155434;rank=10 scaffold_4 . CDS 379683 379739 . + 0 ID=Physo155434;Parent=Physo155434;rank=11 scaffold_4 . CDS 379977 380109 . + 0 ID=Physo155434;Parent=Physo155434;rank=12 scaffold_4 . CDS 380731 381314 . + 0 ID=Physo155434;Parent=Physo155434;rank=13 scaffold_4 . repeat_region 383695 383790 . ? . description=trf scaffold_4 . repeat_region 387413 387422 . ? . description=dust scaffold_4 . repeat_region 387662 387712 . ? . description=trf scaffold_4 ensembl protein_coding_gene 381579 384566 . + . ID=Physo128227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40071;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 381579 384566 . + . ID=Physo128227;Parent=Physo128227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 381579 381690 . + 0 ID=Physo128227;Parent=Physo128227;rank=1 scaffold_4 . exon 381579 381690 . + . ID=Physo128227.1;Parent=Physo128227;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 381811 382185 . + 0 ID=Physo128227;Parent=Physo128227;rank=2 scaffold_4 . exon 381811 382185 . + . ID=Physo128227.2;Parent=Physo128227;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 382598 382669 . + 0 ID=Physo128227;Parent=Physo128227;rank=3 scaffold_4 . exon 382598 382669 . + . ID=Physo128227.3;Parent=Physo128227;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 383004 383741 . + 0 ID=Physo128227;Parent=Physo128227;rank=4 scaffold_4 . exon 383004 383741 . + . ID=Physo128227.4;Parent=Physo128227;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 383974 384181 . + 0 ID=Physo128227;Parent=Physo128227;rank=5 scaffold_4 . exon 383974 384181 . + . ID=Physo128227.5;Parent=Physo128227;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_4 . CDS 384260 384566 . + 0 ID=Physo128227;Parent=Physo128227;rank=6 scaffold_4 . exon 384260 384566 . + . ID=Physo128227.6;Parent=Physo128227;constitutive=1;ensembl_phase=2;rank=6 scaffold_4 ensembl protein_coding_gene 386077 387068 . + . ID=Physo128228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40072;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 386077 387068 . + . ID=Physo128228;Parent=Physo128228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 386077 386749 . + 0 ID=Physo128228;Parent=Physo128228;rank=1 scaffold_4 . exon 386077 386749 . + . ID=Physo128228.1;Parent=Physo128228;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 386854 386909 . + 0 ID=Physo128228;Parent=Physo128228;rank=2 scaffold_4 . exon 386854 386909 . + . ID=Physo128228.2;Parent=Physo128228;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 386952 387068 . + 0 ID=Physo128228;Parent=Physo128228;rank=3 scaffold_4 . exon 386952 387068 . + . ID=Physo128228.3;Parent=Physo128228;constitutive=1;rank=3 scaffold_4 . exon 378785 378849 . + . ID=Physo155434.5;Parent=Physo155434;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_4 . exon 378871 378931 . + . ID=Physo155434.6;Parent=Physo155434;constitutive=1;ensembl_phase=2;rank=6 scaffold_4 . exon 379011 379106 . + . ID=Physo155434.7;Parent=Physo155434;constitutive=1;rank=7 scaffold_4 . exon 379172 379229 . + . ID=Physo155434.8;Parent=Physo155434;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_4 . exon 379290 379449 . + . ID=Physo155434.9;Parent=Physo155434;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=9 scaffold_4 . exon 379536 379617 . + . ID=Physo155434.10;Parent=Physo155434;constitutive=1;ensembl_phase=2;rank=10 scaffold_4 . exon 379683 379739 . + . ID=Physo155434.11;Parent=Physo155434;constitutive=1;rank=11 scaffold_4 . exon 379977 380109 . + . ID=Physo155434.12;Parent=Physo155434;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_4 . exon 380731 381314 . + . ID=Physo155434.13;Parent=Physo155434;constitutive=1;ensembl_phase=1;rank=13 scaffold_4 . biological_region 390457 390458 0.999 + . logic_name=eponine scaffold_4 . biological_region 391316 391317 0.999 + . logic_name=eponine scaffold_4 . biological_region 391425 391428 0.999 + . logic_name=eponine scaffold_4 . biological_region 391480 391483 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 390127 391821 . - . ID=Physo128229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40073;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 390127 391821 . - . ID=Physo128229;Parent=Physo128229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 390127 391821 . - 0 ID=Physo128229;Parent=Physo128229;rank=1 scaffold_4 . exon 390127 391821 . - . ID=Physo128229.1;Parent=Physo128229;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 393228 394184 . + . ID=Physo128230;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40074;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 393228 394184 . + . ID=Physo128230;Parent=Physo128230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 393228 393578 . + 0 ID=Physo128230;Parent=Physo128230;rank=1 scaffold_4 . exon 393228 393578 . + . ID=Physo128230.1;Parent=Physo128230;constitutive=1;rank=1 scaffold_4 . CDS 393613 394044 . + 0 ID=Physo128230;Parent=Physo128230;rank=2 scaffold_4 . exon 393613 394184 . + . ID=Physo128230.2;Parent=Physo128230;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_4 . repeat_region 406473 406858 . - . description=Gypsy-2-I_PI-int scaffold_4 . repeat_region 407529 407536 . ? . description=dust scaffold_4 . repeat_region 407675 407780 . - . description=Gypsy-2-I_PI-int scaffold_4 ensembl protein_coding_gene 401922 413627 . - . ID=Physo108256;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40007;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 401922 413627 . - . ID=Physo108256;Parent=Physo108256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 401922 401994 . - 0 ID=Physo108256;Parent=Physo108256;rank=11 scaffold_4 . exon 401922 401994 . - . ID=Physo108256.11;Parent=Physo108256;constitutive=1;ensembl_phase=2;rank=11 scaffold_4 . CDS 402930 402934 . - 0 ID=Physo108256;Parent=Physo108256;rank=10 scaffold_4 . exon 402930 402934 . - . ID=Physo108256.10;Parent=Physo108256;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_4 . CDS 405791 405847 . - 0 ID=Physo108256;Parent=Physo108256;rank=9 scaffold_4 . exon 405791 405847 . - . ID=Physo108256.9;Parent=Physo108256;constitutive=1;rank=9 scaffold_4 . CDS 405923 407159 . - 0 ID=Physo108256;Parent=Physo108256;rank=8 scaffold_4 . exon 405923 407159 . - . ID=Physo108256.8;Parent=Physo108256;constitutive=1;ensembl_phase=2;rank=8 scaffold_4 . CDS 407541 407568 . - 0 ID=Physo108256;Parent=Physo108256;rank=7 scaffold_4 . exon 407541 407568 . - . ID=Physo108256.7;Parent=Physo108256;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_4 . CDS 407632 408558 . - 0 ID=Physo108256;Parent=Physo108256;rank=6 scaffold_4 . exon 407632 408558 . - . ID=Physo108256.6;Parent=Physo108256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_4 . CDS 408709 408910 . - 0 ID=Physo108256;Parent=Physo108256;rank=5 scaffold_4 . CDS 408948 408952 . - 0 ID=Physo108256;Parent=Physo108256;rank=4 scaffold_4 . CDS 409331 409378 . - 0 ID=Physo108256;Parent=Physo108256;rank=3 scaffold_4 . CDS 411052 411056 . - 0 ID=Physo108256;Parent=Physo108256;rank=2 scaffold_4 . CDS 413611 413627 . - 0 ID=Physo108256;Parent=Physo108256;rank=1 scaffold_4 . biological_region 409799 409803 0.999 - . logic_name=eponine scaffold_4 . repeat_region 412288 412319 . ? . description=trf scaffold_4 . biological_region 412427 412429 0.999 - . logic_name=eponine scaffold_4 . biological_region 416149 416154 0.999 + . logic_name=eponine scaffold_4 . exon 408709 408910 . - . ID=Physo108256.5;Parent=Physo108256;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_4 . exon 408948 408952 . - . ID=Physo108256.4;Parent=Physo108256;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . exon 409331 409378 . - . ID=Physo108256.3;Parent=Physo108256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . exon 411052 411056 . - . ID=Physo108256.2;Parent=Physo108256;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . exon 413611 413627 . - . ID=Physo108256.1;Parent=Physo108256;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 415688 417158 . - . ID=Physo128232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40076;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 415688 417158 . - . ID=Physo128232;Parent=Physo128232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 415688 416795 . - 0 ID=Physo128232;Parent=Physo128232;rank=2 scaffold_4 . exon 415688 416795 . - . ID=Physo128232.2;Parent=Physo128232;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 416872 417158 . - 0 ID=Physo128232;Parent=Physo128232;rank=1 scaffold_4 . exon 416872 417158 . - . ID=Physo128232.1;Parent=Physo128232;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 417560 418587 . + . ID=Physo155438;biotype=protein_coding;external_name=C_scaffold_4000006;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 417560 418587 . + . ID=Physo155438;Parent=Physo155438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 417560 417721 . + 0 ID=Physo155438;Parent=Physo155438;rank=1 scaffold_4 . exon 417560 417721 . + . ID=Physo155438.1;Parent=Physo155438;constitutive=1;rank=1 scaffold_4 . CDS 417793 418587 . + 0 ID=Physo155438;Parent=Physo155438;rank=2 scaffold_4 . exon 417793 418587 . + . ID=Physo155438.2;Parent=Physo155438;constitutive=1;rank=2 scaffold_4 . repeat_region 419026 419034 . ? . description=dust scaffold_4 . repeat_region 426958 426969 . ? . description=dust scaffold_4 ensembl protein_coding_gene 419471 421552 . - . ID=Physo128234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40078;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 419471 421552 . - . ID=Physo128234;Parent=Physo128234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 419471 421552 . - 0 ID=Physo128234;Parent=Physo128234;rank=1 scaffold_4 . exon 419471 421552 . - . ID=Physo128234.1;Parent=Physo128234;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 422450 423728 . - . ID=Physo128235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40079;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 422450 423728 . - . ID=Physo128235;Parent=Physo128235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 422450 422724 . - 0 ID=Physo128235;Parent=Physo128235;rank=2 scaffold_4 . exon 422450 422724 . - . ID=Physo128235.2;Parent=Physo128235;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 422825 423728 . - 0 ID=Physo128235;Parent=Physo128235;rank=1 scaffold_4 . exon 422825 423728 . - . ID=Physo128235.1;Parent=Physo128235;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 427960 429729 . - . ID=Physo128236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40080;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 427960 429729 . - . ID=Physo128236;Parent=Physo128236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 427960 428205 . - 0 ID=Physo128236;Parent=Physo128236;rank=6 scaffold_4 . exon 427960 428205 . - . ID=Physo128236.6;Parent=Physo128236;constitutive=1;rank=6 scaffold_4 . CDS 428291 428346 . - 0 ID=Physo128236;Parent=Physo128236;rank=5 scaffold_4 . CDS 428644 428994 . - 0 ID=Physo128236;Parent=Physo128236;rank=4 scaffold_4 . CDS 429042 429125 . - 0 ID=Physo128236;Parent=Physo128236;rank=3 scaffold_4 . CDS 429167 429576 . - 0 ID=Physo128236;Parent=Physo128236;rank=2 scaffold_4 . CDS 429641 429729 . - 0 ID=Physo128236;Parent=Physo128236;rank=1 scaffold_4 . exon 428291 428346 . - . ID=Physo128236.5;Parent=Physo128236;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . exon 428644 428994 . - . ID=Physo128236.4;Parent=Physo128236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_4 . exon 429042 429125 . - . ID=Physo128236.3;Parent=Physo128236;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . exon 429167 429576 . - . ID=Physo128236.2;Parent=Physo128236;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . exon 429641 429729 . - . ID=Physo128236.1;Parent=Physo128236;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 433546 435619 . - . ID=Physo128237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40081;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 433546 435619 . - . ID=Physo128237;Parent=Physo128237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 433546 433553 . - 0 ID=Physo128237;Parent=Physo128237;rank=2 scaffold_4 . exon 433546 433553 . - . ID=Physo128237.2;Parent=Physo128237;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 433588 435619 . - 0 ID=Physo128237;Parent=Physo128237;rank=1 scaffold_4 . exon 433588 435619 . - . ID=Physo128237.1;Parent=Physo128237;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 435872 437038 . + . ID=Physo128238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40082;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 435872 437038 . + . ID=Physo128238;Parent=Physo128238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 435872 437038 . + 0 ID=Physo128238;Parent=Physo128238;rank=1 scaffold_4 . exon 435872 437038 . + . ID=Physo128238.1;Parent=Physo128238;constitutive=1;rank=1 scaffold_4 . biological_region 445448 445451 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 442228 444572 . - . ID=Physo128239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40083;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 442228 444572 . - . ID=Physo128239;Parent=Physo128239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 442228 442461 . - 0 ID=Physo128239;Parent=Physo128239;rank=12 scaffold_4 . exon 442228 442461 . - . ID=Physo128239.12;Parent=Physo128239;constitutive=1;rank=12 scaffold_4 . CDS 442534 442674 . - 0 ID=Physo128239;Parent=Physo128239;rank=11 scaffold_4 . exon 442534 442674 . - . ID=Physo128239.11;Parent=Physo128239;constitutive=1;rank=11 scaffold_4 . CDS 442764 442840 . - 0 ID=Physo128239;Parent=Physo128239;rank=10 scaffold_4 . exon 442764 442840 . - . ID=Physo128239.10;Parent=Physo128239;constitutive=1;ensembl_phase=1;rank=10 scaffold_4 . CDS 442908 443059 . - 0 ID=Physo128239;Parent=Physo128239;rank=9 scaffold_4 . exon 442908 443059 . - . ID=Physo128239.9;Parent=Physo128239;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_4 . CDS 443102 443165 . - 0 ID=Physo128239;Parent=Physo128239;rank=8 scaffold_4 . exon 443102 443165 . - . ID=Physo128239.8;Parent=Physo128239;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_4 . CDS 443236 443373 . - 0 ID=Physo128239;Parent=Physo128239;rank=7 scaffold_4 . exon 443236 443373 . - . ID=Physo128239.7;Parent=Physo128239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_4 . CDS 443477 443527 . - 0 ID=Physo128239;Parent=Physo128239;rank=6 scaffold_4 . exon 443477 443527 . - . ID=Physo128239.6;Parent=Physo128239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_4 . CDS 443648 443716 . - 0 ID=Physo128239;Parent=Physo128239;rank=5 scaffold_4 . exon 443648 443716 . - . ID=Physo128239.5;Parent=Physo128239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 443766 443897 . - 0 ID=Physo128239;Parent=Physo128239;rank=4 scaffold_4 . exon 443766 443897 . - . ID=Physo128239.4;Parent=Physo128239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 443965 444045 . - 0 ID=Physo128239;Parent=Physo128239;rank=3 scaffold_4 . exon 443965 444045 . - . ID=Physo128239.3;Parent=Physo128239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 444117 444344 . - 0 ID=Physo128239;Parent=Physo128239;rank=2 scaffold_4 . exon 444117 444344 . - . ID=Physo128239.2;Parent=Physo128239;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 444443 444572 . - 0 ID=Physo128239;Parent=Physo128239;rank=1 scaffold_4 . exon 444443 444572 . - . ID=Physo128239.1;Parent=Physo128239;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 444947 446961 . + . ID=Physo128240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40084;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 444947 446961 . + . ID=Physo128240;Parent=Physo128240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 444947 446885 . + 0 ID=Physo128240;Parent=Physo128240;rank=1 scaffold_4 . exon 444947 446885 . + . ID=Physo128240.1;Parent=Physo128240;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 446951 446961 . + 0 ID=Physo128240;Parent=Physo128240;rank=2 scaffold_4 . exon 446951 446961 . + . ID=Physo128240.2;Parent=Physo128240;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . repeat_region 449342 449524 . + . description=GypsyPi-1c_LTR scaffold_4 . repeat_region 449525 449835 . + . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 449828 450801 . + . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 450668 450787 . ? . description=trf scaffold_4 . repeat_region 450780 450880 . ? . description=trf scaffold_4 . repeat_region 450830 450902 . ? . description=trf scaffold_4 . repeat_region 450907 450956 . ? . description=dust scaffold_4 . repeat_region 452645 452827 . + . description=GypsyPi-1c_LTR scaffold_4 . repeat_region 452828 453138 . + . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 453131 454103 . + . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 454082 454182 . ? . description=trf scaffold_4 . repeat_region 454132 454214 . ? . description=trf scaffold_4 . repeat_region 454325 454690 . + . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 454693 457075 . + . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 457335 458262 . + . description=GypsyPi-1c_I-int scaffold_4 ensembl protein_coding_gene 448450 448698 . + . ID=Physo110871;biotype=protein_coding;external_name=estExt_Genewise1.C_40033;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 448450 448698 . + . ID=Physo110871;Parent=Physo110871;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 448450 448698 . + . ID=Physo110871.1;Parent=Physo110871;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 448489 448698 . + 0 ID=Physo110871;Parent=Physo110871;rank=1 scaffold_4 ensembl protein_coding_gene 451750 451962 . + . ID=Physo110872;biotype=protein_coding;external_name=estExt_Genewise1.C_40034;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 451750 451962 . + . ID=Physo110872;Parent=Physo110872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 451750 451962 . + . ID=Physo110872.1;Parent=Physo110872;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 451792 451962 . + 0 ID=Physo110872;Parent=Physo110872;rank=1 scaffold_4 ensembl protein_coding_gene 449612 450579 . + . ID=Physo128241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40085;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 449612 450579 . + . ID=Physo128241;Parent=Physo128241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 449612 449849 . + 0 ID=Physo128241;Parent=Physo128241;rank=1 scaffold_4 . exon 449612 449849 . + . ID=Physo128241.1;Parent=Physo128241;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 450002 450579 . + 0 ID=Physo128241;Parent=Physo128241;rank=2 scaffold_4 . exon 450002 450579 . + . ID=Physo128241.2;Parent=Physo128241;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 452915 456711 . + . ID=Physo128242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40086;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 452915 456711 . + . ID=Physo128242;Parent=Physo128242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 452915 453152 . + 0 ID=Physo128242;Parent=Physo128242;rank=1 scaffold_4 . exon 452915 453152 . + . ID=Physo128242.1;Parent=Physo128242;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 453305 453878 . + 0 ID=Physo128242;Parent=Physo128242;rank=2 scaffold_4 . exon 453305 453878 . + . ID=Physo128242.2;Parent=Physo128242;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 453916 454614 . + 0 ID=Physo128242;Parent=Physo128242;rank=3 scaffold_4 . exon 453916 454614 . + . ID=Physo128242.3;Parent=Physo128242;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 454676 455330 . + 0 ID=Physo128242;Parent=Physo128242;rank=4 scaffold_4 . exon 454676 455330 . + . ID=Physo128242.4;Parent=Physo128242;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 455368 456009 . + 0 ID=Physo128242;Parent=Physo128242;rank=5 scaffold_4 . exon 455368 456009 . + . ID=Physo128242.5;Parent=Physo128242;constitutive=1;rank=5 scaffold_4 . CDS 456076 456711 . + 0 ID=Physo128242;Parent=Physo128242;rank=6 scaffold_4 . exon 456076 456711 . + . ID=Physo128242.6;Parent=Physo128242;constitutive=1;rank=6 scaffold_4 ensembl protein_coding_gene 457021 458967 . - . ID=Physo128243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40087;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 457021 458967 . - . ID=Physo128243;Parent=Physo128243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 457021 457413 . - 0 ID=Physo128243;Parent=Physo128243;rank=4 scaffold_4 . exon 457021 457413 . - . ID=Physo128243.4;Parent=Physo128243;constitutive=1;rank=4 scaffold_4 . CDS 457562 457774 . - 0 ID=Physo128243;Parent=Physo128243;rank=3 scaffold_4 . exon 457562 457774 . - . ID=Physo128243.3;Parent=Physo128243;constitutive=1;rank=3 scaffold_4 . CDS 457805 458134 . - 0 ID=Physo128243;Parent=Physo128243;rank=2 scaffold_4 . exon 457805 458134 . - . ID=Physo128243.2;Parent=Physo128243;constitutive=1;rank=2 scaffold_4 . CDS 458176 458967 . - 0 ID=Physo128243;Parent=Physo128243;rank=1 scaffold_4 . biological_region 458341 458342 0.999 - . logic_name=eponine scaffold_4 . biological_region 458700 458705 0.999 - . logic_name=eponine scaffold_4 . biological_region 458898 458901 0.999 - . logic_name=eponine scaffold_4 . biological_region 459622 459627 0.999 - . logic_name=eponine scaffold_4 . biological_region 459851 459856 0.999 + . logic_name=eponine scaffold_4 . biological_region 462970 462972 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 464582 465143 . - . ID=Physo110877;biotype=protein_coding;external_name=estExt_Genewise1.C_40039;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 464582 465143 . - . ID=Physo110877;Parent=Physo110877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 464582 465143 . - . ID=Physo110877.1;Parent=Physo110877;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 464584 465021 . - 0 ID=Physo110877;Parent=Physo110877;rank=1 scaffold_4 . exon 458176 458967 . - . ID=Physo128243.1;Parent=Physo128243;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 459566 462588 . + . ID=Physo128244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40088;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 459566 462588 . + . ID=Physo128244;Parent=Physo128244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 459566 460816 . + 0 ID=Physo128244;Parent=Physo128244;rank=1 scaffold_4 . exon 459566 460816 . + . ID=Physo128244.1;Parent=Physo128244;constitutive=1;rank=1 scaffold_4 . CDS 461177 462444 . + 0 ID=Physo128244;Parent=Physo128244;rank=2 scaffold_4 . exon 461177 462444 . + . ID=Physo128244.2;Parent=Physo128244;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 462486 462588 . + 0 ID=Physo128244;Parent=Physo128244;rank=3 scaffold_4 . exon 462486 462588 . + . ID=Physo128244.3;Parent=Physo128244;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 ensembl protein_coding_gene 465500 479574 . - . ID=Physo128245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40089;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 465500 479574 . - . ID=Physo128245;Parent=Physo128245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 465500 465540 . - 0 ID=Physo128245;Parent=Physo128245;rank=6 scaffold_4 . exon 465500 465540 . - . ID=Physo128245.6;Parent=Physo128245;constitutive=1;ensembl_phase=1;rank=6 scaffold_4 . CDS 465637 466056 . - 0 ID=Physo128245;Parent=Physo128245;rank=5 scaffold_4 . exon 465637 466056 . - . ID=Physo128245.5;Parent=Physo128245;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 466181 467298 . - 0 ID=Physo128245;Parent=Physo128245;rank=4 scaffold_4 . exon 466181 467298 . - . ID=Physo128245.4;Parent=Physo128245;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 467499 467836 . - 0 ID=Physo128245;Parent=Physo128245;rank=3 scaffold_4 . exon 467499 467836 . - . ID=Physo128245.3;Parent=Physo128245;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 467945 476777 . - 0 ID=Physo128245;Parent=Physo128245;rank=2 scaffold_4 . CDS 476882 479574 . - 0 ID=Physo128245;Parent=Physo128245;rank=1 scaffold_4 . exon 467945 476777 . - . ID=Physo128245.2;Parent=Physo128245;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . exon 476882 479574 . - . ID=Physo128245.1;Parent=Physo128245;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . biological_region 479269 479270 0.999 + . logic_name=eponine scaffold_4 . biological_region 479602 479604 0.999 - . logic_name=eponine scaffold_4 . repeat_region 481724 485424 . ? . description=dust scaffold_4 . repeat_region 486863 486912 . ? . description=dust scaffold_4 ensembl protein_coding_gene 465500 479574 . - . ID=Physo128245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40089;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 465500 479574 . - . ID=Physo128245;Parent=Physo128245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 465500 465540 . - 0 ID=Physo128245;Parent=Physo128245;rank=6 scaffold_4 . CDS 465637 466056 . - 0 ID=Physo128245;Parent=Physo128245;rank=5 scaffold_4 . CDS 466181 467298 . - 0 ID=Physo128245;Parent=Physo128245;rank=4 scaffold_4 . CDS 467499 467836 . - 0 ID=Physo128245;Parent=Physo128245;rank=3 scaffold_4 . CDS 467945 476777 . - 0 ID=Physo128245;Parent=Physo128245;rank=2 scaffold_4 . CDS 476882 479574 . - 0 ID=Physo128245;Parent=Physo128245;rank=1 scaffold_4 ensembl protein_coding_gene 481379 495264 . - . ID=Physo128246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40090;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 481379 495264 . - . ID=Physo128246;Parent=Physo128246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 481379 481411 . - 0 ID=Physo128246;Parent=Physo128246;rank=5 scaffold_4 . exon 481379 481411 . - . ID=Physo128246.5;Parent=Physo128246;constitutive=1;rank=5 scaffold_4 . CDS 485440 485766 . - 0 ID=Physo128246;Parent=Physo128246;rank=4 scaffold_4 . exon 485440 485766 . - . ID=Physo128246.4;Parent=Physo128246;constitutive=1;rank=4 scaffold_4 . CDS 485794 486789 . - 0 ID=Physo128246;Parent=Physo128246;rank=3 scaffold_4 . exon 485794 486789 . - . ID=Physo128246.3;Parent=Physo128246;constitutive=1;rank=3 scaffold_4 . CDS 487513 488118 . - 0 ID=Physo128246;Parent=Physo128246;rank=2 scaffold_4 . exon 487513 488118 . - . ID=Physo128246.2;Parent=Physo128246;constitutive=1;rank=2 scaffold_4 . CDS 488164 495264 . - 0 ID=Physo128246;Parent=Physo128246;rank=1 scaffold_4 . repeat_region 495273 495297 . ? . description=trf scaffold_4 . repeat_region 496798 496834 . ? . description=trf scaffold_4 . repeat_region 496803 496837 . ? . description=trf scaffold_4 ensembl protein_coding_gene 496216 496937 . - . ID=Physo110891;biotype=protein_coding;external_name=estExt_Genewise1.C_40053;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 496216 496937 . - . ID=Physo110891;Parent=Physo110891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 496216 496671 . - . ID=Physo110891.3;Parent=Physo110891;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_4 . CDS 496247 496671 . - 0 ID=Physo110891;Parent=Physo110891;rank=3 scaffold_4 . CDS 496748 496846 . - 0 ID=Physo110891;Parent=Physo110891;rank=2 scaffold_4 . exon 496748 496846 . - . ID=Physo110891.2;Parent=Physo110891;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 496923 496935 . - 0 ID=Physo110891;Parent=Physo110891;rank=1 scaffold_4 . exon 496923 496937 . - . ID=Physo110891.1;Parent=Physo110891;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 . exon 488164 495264 . - . ID=Physo128246.1;Parent=Physo128246;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 497168 498833 . + . ID=Physo128248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40092;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 497168 498833 . + . ID=Physo128248;Parent=Physo128248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 497168 497291 . + 0 ID=Physo128248;Parent=Physo128248;rank=1 scaffold_4 . exon 497168 497291 . + . ID=Physo128248.1;Parent=Physo128248;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 497442 497639 . + 0 ID=Physo128248;Parent=Physo128248;rank=2 scaffold_4 . exon 497442 497639 . + . ID=Physo128248.2;Parent=Physo128248;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 497715 497795 . + 0 ID=Physo128248;Parent=Physo128248;rank=3 scaffold_4 . exon 497715 497795 . + . ID=Physo128248.3;Parent=Physo128248;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 497880 497904 . + 0 ID=Physo128248;Parent=Physo128248;rank=4 scaffold_4 . CDS 498382 498470 . + 0 ID=Physo128248;Parent=Physo128248;rank=5 scaffold_4 . CDS 498564 498713 . + 0 ID=Physo128248;Parent=Physo128248;rank=6 scaffold_4 . CDS 498823 498833 . + 0 ID=Physo128248;Parent=Physo128248;rank=7 scaffold_4 . repeat_region 501140 501147 . ? . description=dust scaffold_4 . biological_region 501815 501817 0.999 - . logic_name=eponine scaffold_4 . biological_region 501884 501894 0.999 + . logic_name=eponine scaffold_4 . biological_region 501887 501890 0.999 - . logic_name=eponine scaffold_4 . biological_region 501928 501933 0.999 - . logic_name=eponine scaffold_4 . biological_region 501987 501991 0.999 + . logic_name=eponine scaffold_4 . repeat_region 504358 504366 . ? . description=dust scaffold_4 . repeat_region 506106 506113 . ? . description=dust scaffold_4 . exon 497880 497904 . + . ID=Physo128248.4;Parent=Physo128248;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_4 . exon 498382 498470 . + . ID=Physo128248.5;Parent=Physo128248;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_4 . exon 498564 498713 . + . ID=Physo128248.6;Parent=Physo128248;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_4 . exon 498823 498833 . + . ID=Physo128248.7;Parent=Physo128248;constitutive=1;ensembl_phase=1;rank=7 scaffold_4 ensembl protein_coding_gene 499666 501456 . - . ID=Physo128249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40093;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 499666 501456 . - . ID=Physo128249;Parent=Physo128249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 499666 499668 . - 0 ID=Physo128249;Parent=Physo128249;rank=7 scaffold_4 . exon 499666 499668 . - . ID=Physo128249.7;Parent=Physo128249;constitutive=1;rank=7 scaffold_4 . CDS 499817 500041 . - 0 ID=Physo128249;Parent=Physo128249;rank=6 scaffold_4 . exon 499817 500041 . - . ID=Physo128249.6;Parent=Physo128249;constitutive=1;rank=6 scaffold_4 . CDS 500386 500472 . - 0 ID=Physo128249;Parent=Physo128249;rank=5 scaffold_4 . exon 500386 500472 . - . ID=Physo128249.5;Parent=Physo128249;constitutive=1;rank=5 scaffold_4 . CDS 500540 500707 . - 0 ID=Physo128249;Parent=Physo128249;rank=4 scaffold_4 . exon 500540 500707 . - . ID=Physo128249.4;Parent=Physo128249;constitutive=1;rank=4 scaffold_4 . CDS 500783 501089 . - 0 ID=Physo128249;Parent=Physo128249;rank=3 scaffold_4 . exon 500783 501089 . - . ID=Physo128249.3;Parent=Physo128249;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 501186 501219 . - 0 ID=Physo128249;Parent=Physo128249;rank=2 scaffold_4 . exon 501186 501219 . - . ID=Physo128249.2;Parent=Physo128249;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 501352 501445 . - 0 ID=Physo128249;Parent=Physo128249;rank=1 scaffold_4 . exon 501352 501456 . - . ID=Physo128249.1;Parent=Physo128249;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 501645 504259 . + . ID=Physo128250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40094;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 501645 504259 . + . ID=Physo128250;Parent=Physo128250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 501645 503847 . + 0 ID=Physo128250;Parent=Physo128250;rank=1 scaffold_4 . exon 501645 503847 . + . ID=Physo128250.1;Parent=Physo128250;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 503918 504123 . + 0 ID=Physo128250;Parent=Physo128250;rank=2 scaffold_4 . exon 503918 504259 . + . ID=Physo128250.2;Parent=Physo128250;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_4 . repeat_region 508538 508565 . ? . description=trf scaffold_4 . repeat_region 516813 516837 . ? . description=trf scaffold_4 . repeat_region 516864 516985 . ? . description=trf scaffold_4 ensembl protein_coding_gene 509351 509782 . - . ID=Physo110897;biotype=protein_coding;external_name=estExt_Genewise1.C_40059;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 509351 509782 . - . ID=Physo110897;Parent=Physo110897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 509351 509776 . - 0 ID=Physo110897;Parent=Physo110897;rank=1 scaffold_4 . exon 509351 509782 . - . ID=Physo110897.1;Parent=Physo110897;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 510108 510449 . - . ID=Physo110901;biotype=protein_coding;external_name=estExt_Genewise1.C_40063;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 510108 510449 . - . ID=Physo110901;Parent=Physo110901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 510108 510431 . - 0 ID=Physo110901;Parent=Physo110901;rank=1 scaffold_4 . exon 510108 510449 . - . ID=Physo110901.1;Parent=Physo110901;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 516501 517499 . - . ID=Physo128251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40095;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 516501 517499 . - . ID=Physo128251;Parent=Physo128251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 516501 517499 . - 0 ID=Physo128251;Parent=Physo128251;rank=1 scaffold_4 . exon 516501 517499 . - . ID=Physo128251.1;Parent=Physo128251;constitutive=1;rank=1 scaffold_4 . repeat_region 519239 519280 . ? . description=dust scaffold_4 . biological_region 519624 519625 0.999 + . logic_name=eponine scaffold_4 . biological_region 519685 519686 0.999 + . logic_name=eponine scaffold_4 . repeat_region 520031 520049 . ? . description=dust scaffold_4 ensembl protein_coding_gene 526295 527137 . - . ID=Physo108257;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40008;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 526295 527137 . - . ID=Physo108257;Parent=Physo108257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 526295 526381 . - 0 ID=Physo108257;Parent=Physo108257;rank=4 scaffold_4 . exon 526295 526381 . - . ID=Physo108257.4;Parent=Physo108257;constitutive=1;rank=4 scaffold_4 . CDS 526419 526453 . - 0 ID=Physo108257;Parent=Physo108257;rank=3 scaffold_4 . exon 526419 526453 . - . ID=Physo108257.3;Parent=Physo108257;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 526491 526498 . - 0 ID=Physo108257;Parent=Physo108257;rank=2 scaffold_4 . exon 526491 526498 . - . ID=Physo108257.2;Parent=Physo108257;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 526539 527137 . - 0 ID=Physo108257;Parent=Physo108257;rank=1 scaffold_4 . exon 526539 527137 . - . ID=Physo108257.1;Parent=Physo108257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 518217 520305 . + . ID=Physo128252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40096;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 518217 520305 . + . ID=Physo128252;Parent=Physo128252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 518217 518834 . + 0 ID=Physo128252;Parent=Physo128252;rank=1 scaffold_4 . exon 518217 518834 . + . ID=Physo128252.1;Parent=Physo128252;constitutive=1;rank=1 scaffold_4 . CDS 519298 520305 . + 0 ID=Physo128252;Parent=Physo128252;rank=2 scaffold_4 . exon 519298 520305 . + . ID=Physo128252.2;Parent=Physo128252;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 524111 525928 . + . ID=Physo128253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40097;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 524111 525928 . + . ID=Physo128253;Parent=Physo128253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 524111 525052 . + 0 ID=Physo128253;Parent=Physo128253;rank=1 scaffold_4 . exon 524111 525052 . + . ID=Physo128253.1;Parent=Physo128253;constitutive=1;rank=1 scaffold_4 . CDS 525128 525572 . + 0 ID=Physo128253;Parent=Physo128253;rank=2 scaffold_4 . exon 525128 525572 . + . ID=Physo128253.2;Parent=Physo128253;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 525789 525928 . + 0 ID=Physo128253;Parent=Physo128253;rank=3 scaffold_4 . exon 525789 525928 . + . ID=Physo128253.3;Parent=Physo128253;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . repeat_region 534718 534748 . ? . description=trf scaffold_4 ensembl protein_coding_gene 532561 534497 . - . ID=Physo108258;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40009;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 532561 534497 . - . ID=Physo108258;Parent=Physo108258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 532561 533690 . - . ID=Physo108258.3;Parent=Physo108258;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_4 . CDS 532659 533690 . - 0 ID=Physo108258;Parent=Physo108258;rank=3 scaffold_4 . CDS 533780 534258 . - 0 ID=Physo108258;Parent=Physo108258;rank=2 scaffold_4 . exon 533780 534258 . - . ID=Physo108258.2;Parent=Physo108258;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 534339 534450 . - 0 ID=Physo108258;Parent=Physo108258;rank=1 scaffold_4 . exon 534339 534497 . - . ID=Physo108258.1;Parent=Physo108258;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 527656 529184 . + . ID=Physo128255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40099;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 527656 529184 . + . ID=Physo128255;Parent=Physo128255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 527656 528270 . + 0 ID=Physo128255;Parent=Physo128255;rank=1 scaffold_4 . exon 527656 528270 . + . ID=Physo128255.1;Parent=Physo128255;constitutive=1;rank=1 scaffold_4 . CDS 528732 529184 . + 0 ID=Physo128255;Parent=Physo128255;rank=2 scaffold_4 . exon 528732 529184 . + . ID=Physo128255.2;Parent=Physo128255;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 531121 531798 . - . ID=Physo128257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40101;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 531121 531798 . - . ID=Physo128257;Parent=Physo128257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 531121 531124 . - 0 ID=Physo128257;Parent=Physo128257;rank=4 scaffold_4 . exon 531121 531124 . - . ID=Physo128257.4;Parent=Physo128257;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 531195 531380 . - 0 ID=Physo128257;Parent=Physo128257;rank=3 scaffold_4 . exon 531195 531380 . - . ID=Physo128257.3;Parent=Physo128257;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 531450 531651 . - 0 ID=Physo128257;Parent=Physo128257;rank=2 scaffold_4 . exon 531450 531651 . - . ID=Physo128257.2;Parent=Physo128257;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 531744 531798 . - 0 ID=Physo128257;Parent=Physo128257;rank=1 scaffold_4 . exon 531744 531798 . - . ID=Physo128257.1;Parent=Physo128257;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 534816 535844 . - . ID=Physo128260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40104;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 534816 535844 . - . ID=Physo128260;Parent=Physo128260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 534816 535844 . - . ID=Physo128260.1;Parent=Physo128260;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 534923 535807 . - 0 ID=Physo128260;Parent=Physo128260;rank=1 scaffold_4 ensembl protein_coding_gene 536442 537861 . + . ID=Physo128261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40105;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 536442 537861 . + . ID=Physo128261;Parent=Physo128261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 536442 536512 . + 0 ID=Physo128261;Parent=Physo128261;rank=1 scaffold_4 . exon 536442 536512 . + . ID=Physo128261.1;Parent=Physo128261;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 536725 536749 . + 0 ID=Physo128261;Parent=Physo128261;rank=2 scaffold_4 . exon 536725 536749 . + . ID=Physo128261.2;Parent=Physo128261;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 536817 536975 . + 0 ID=Physo128261;Parent=Physo128261;rank=3 scaffold_4 . exon 536817 536975 . + . ID=Physo128261.3;Parent=Physo128261;constitutive=1;rank=3 scaffold_4 . CDS 537060 537328 . + 0 ID=Physo128261;Parent=Physo128261;rank=4 scaffold_4 . exon 537060 537328 . + . ID=Physo128261.4;Parent=Physo128261;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_4 . CDS 537405 537861 . + 0 ID=Physo128261;Parent=Physo128261;rank=5 scaffold_4 . exon 537405 537861 . + . ID=Physo128261.5;Parent=Physo128261;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 ensembl protein_coding_gene 529641 530516 . + . ID=Physo155441;biotype=protein_coding;external_name=C_scaffold_4000009;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 529641 530516 . + . ID=Physo155441;Parent=Physo155441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 529641 530516 . + 0 ID=Physo155441;Parent=Physo155441;rank=1 scaffold_4 . exon 529641 530516 . + . ID=Physo155441.1;Parent=Physo155441;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 531993 532500 . + . ID=Physo155443;biotype=protein_coding;external_name=C_scaffold_4000011;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 531993 532500 . + . ID=Physo155443;Parent=Physo155443;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 531993 532124 . + 0 ID=Physo155443;Parent=Physo155443;rank=1 scaffold_4 . exon 531993 532124 . + . ID=Physo155443.1;Parent=Physo155443;constitutive=1;rank=1 scaffold_4 . CDS 532210 532500 . + 0 ID=Physo155443;Parent=Physo155443;rank=2 scaffold_4 . exon 532210 532500 . + . ID=Physo155443.2;Parent=Physo155443;constitutive=1;rank=2 scaffold_4 . biological_region 539337 539342 0.999 - . logic_name=eponine scaffold_4 . biological_region 539398 539398 0.999 + . logic_name=eponine scaffold_4 . biological_region 539415 539417 0.999 - . logic_name=eponine scaffold_4 . biological_region 539448 539451 0.999 + . logic_name=eponine scaffold_4 . biological_region 539562 539565 0.999 - . logic_name=eponine scaffold_4 . biological_region 539609 539611 0.999 - . logic_name=eponine scaffold_4 . repeat_region 540408 540447 . ? . description=dust scaffold_4 . biological_region 541228 541233 0.999 + . logic_name=eponine scaffold_4 . biological_region 541276 541277 0.999 - . logic_name=eponine scaffold_4 . repeat_region 544183 544196 . ? . description=dust scaffold_4 . biological_region 545238 545244 0.999 + . logic_name=eponine scaffold_4 . biological_region 545276 545282 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 540618 541358 . + . ID=Physo110912;biotype=protein_coding;external_name=estExt_Genewise1.C_40074;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 540618 541358 . + . ID=Physo110912;Parent=Physo110912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 540618 541358 . + . ID=Physo110912.1;Parent=Physo110912;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 540625 541356 . + 0 ID=Physo110912;Parent=Physo110912;rank=1 scaffold_4 ensembl protein_coding_gene 537902 540159 . - . ID=Physo128262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40106;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 537902 540159 . - . ID=Physo128262;Parent=Physo128262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 537902 538809 . - . ID=Physo128262.5;Parent=Physo128262;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=5 scaffold_4 . CDS 537941 538809 . - 0 ID=Physo128262;Parent=Physo128262;rank=5 scaffold_4 . CDS 538912 538936 . - 0 ID=Physo128262;Parent=Physo128262;rank=4 scaffold_4 . exon 538912 538936 . - . ID=Physo128262.4;Parent=Physo128262;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_4 . CDS 539080 539634 . - 0 ID=Physo128262;Parent=Physo128262;rank=3 scaffold_4 . exon 539080 539634 . - . ID=Physo128262.3;Parent=Physo128262;constitutive=1;rank=3 scaffold_4 . CDS 539709 539766 . - 0 ID=Physo128262;Parent=Physo128262;rank=2 scaffold_4 . exon 539709 539766 . - . ID=Physo128262.2;Parent=Physo128262;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 540107 540159 . - 0 ID=Physo128262;Parent=Physo128262;rank=1 scaffold_4 . exon 540107 540159 . - . ID=Physo128262.1;Parent=Physo128262;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 542638 544057 . - . ID=Physo128264;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40108;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 542638 544057 . - . ID=Physo128264;Parent=Physo128264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 542638 543094 . - 0 ID=Physo128264;Parent=Physo128264;rank=5 scaffold_4 . exon 542638 543094 . - . ID=Physo128264.5;Parent=Physo128264;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 . CDS 543171 543439 . - 0 ID=Physo128264;Parent=Physo128264;rank=4 scaffold_4 . exon 543171 543439 . - . ID=Physo128264.4;Parent=Physo128264;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_4 . CDS 543524 543614 . - 0 ID=Physo128264;Parent=Physo128264;rank=3 scaffold_4 . exon 543524 543614 . - . ID=Physo128264.3;Parent=Physo128264;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 543785 543803 . - 0 ID=Physo128264;Parent=Physo128264;rank=2 scaffold_4 . exon 543785 543803 . - . ID=Physo128264.2;Parent=Physo128264;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 543976 544057 . - 0 ID=Physo128264;Parent=Physo128264;rank=1 scaffold_4 . exon 543976 544057 . - . ID=Physo128264.1;Parent=Physo128264;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 545148 547524 . + . ID=Physo128265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40109;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 545148 547524 . + . ID=Physo128265;Parent=Physo128265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 545148 547399 . + . ID=Physo128265.1;Parent=Physo128265;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 545279 547399 . + 0 ID=Physo128265;Parent=Physo128265;rank=1 scaffold_4 . CDS 547486 547524 . + 0 ID=Physo128265;Parent=Physo128265;rank=2 scaffold_4 . exon 547486 547524 . + . ID=Physo128265.2;Parent=Physo128265;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 551024 554796 . - . ID=Physo155446;biotype=protein_coding;external_name=C_scaffold_4000014;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 551024 554796 . - . ID=Physo155446;Parent=Physo155446;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 551024 551057 . - 0 ID=Physo155446;Parent=Physo155446;rank=10 scaffold_4 . exon 551024 551057 . - . ID=Physo155446.10;Parent=Physo155446;constitutive=1;ensembl_phase=2;rank=10 scaffold_4 . CDS 551089 551415 . - 0 ID=Physo155446;Parent=Physo155446;rank=9 scaffold_4 . exon 551089 551415 . - . ID=Physo155446.9;Parent=Physo155446;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_4 . CDS 551490 551758 . - 0 ID=Physo155446;Parent=Physo155446;rank=8 scaffold_4 . exon 551490 551758 . - . ID=Physo155446.8;Parent=Physo155446;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_4 . CDS 551831 551989 . - 0 ID=Physo155446;Parent=Physo155446;rank=7 scaffold_4 . exon 551831 551989 . - . ID=Physo155446.7;Parent=Physo155446;constitutive=1;rank=7 scaffold_4 . CDS 552038 552125 . - 0 ID=Physo155446;Parent=Physo155446;rank=6 scaffold_4 . exon 552038 552125 . - . ID=Physo155446.6;Parent=Physo155446;constitutive=1;ensembl_phase=2;rank=6 scaffold_4 . CDS 552368 552631 . - 0 ID=Physo155446;Parent=Physo155446;rank=5 scaffold_4 . exon 552368 552631 . - . ID=Physo155446.5;Parent=Physo155446;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_4 . CDS 552674 553131 . - 0 ID=Physo155446;Parent=Physo155446;rank=4 scaffold_4 . exon 552674 553131 . - . ID=Physo155446.4;Parent=Physo155446;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_4 . CDS 553159 554169 . - 0 ID=Physo155446;Parent=Physo155446;rank=3 scaffold_4 . exon 553159 554169 . - . ID=Physo155446.3;Parent=Physo155446;constitutive=1;rank=3 scaffold_4 . CDS 554407 554632 . - 0 ID=Physo155446;Parent=Physo155446;rank=2 scaffold_4 . exon 554407 554632 . - . ID=Physo155446.2;Parent=Physo155446;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 554681 554796 . - 0 ID=Physo155446;Parent=Physo155446;rank=1 scaffold_4 . exon 554681 554796 . - . ID=Physo155446.1;Parent=Physo155446;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . biological_region 561426 561430 0.999 + . logic_name=eponine scaffold_4 . biological_region 561441 561443 0.999 - . logic_name=eponine scaffold_4 . biological_region 561519 561525 0.999 - . logic_name=eponine scaffold_4 . biological_region 563270 563275 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 562354 562971 . - . ID=Physo110925;biotype=protein_coding;external_name=estExt_Genewise1.C_40087;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 562354 562971 . - . ID=Physo110925;Parent=Physo110925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 562354 562833 . - . ID=Physo110925.2;Parent=Physo110925;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_4 . CDS 562512 562833 . - 0 ID=Physo110925;Parent=Physo110925;rank=2 scaffold_4 . CDS 562948 562970 . - 0 ID=Physo110925;Parent=Physo110925;rank=1 scaffold_4 . exon 562948 562971 . - . ID=Physo110925.1;Parent=Physo110925;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 560414 561504 . - . ID=Physo128267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40111;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 560414 561504 . - . ID=Physo128267;Parent=Physo128267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 560414 560484 . - 0 ID=Physo128267;Parent=Physo128267;rank=2 scaffold_4 . exon 560414 560484 . - . ID=Physo128267.2;Parent=Physo128267;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 560538 561504 . - 0 ID=Physo128267;Parent=Physo128267;rank=1 scaffold_4 . exon 560538 561504 . - . ID=Physo128267.1;Parent=Physo128267;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 561641 562381 . + . ID=Physo128268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40112;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 561641 562381 . + . ID=Physo128268;Parent=Physo128268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 561641 561850 . + . ID=Physo128268.1;Parent=Physo128268;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 561661 561850 . + 0 ID=Physo128268;Parent=Physo128268;rank=1 scaffold_4 . CDS 561936 561997 . + 0 ID=Physo128268;Parent=Physo128268;rank=2 scaffold_4 . exon 561936 561997 . + . ID=Physo128268.2;Parent=Physo128268;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 562116 562253 . + 0 ID=Physo128268;Parent=Physo128268;rank=3 scaffold_4 . exon 562116 562381 . + . ID=Physo128268.3;Parent=Physo128268;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_4 ensembl protein_coding_gene 563179 564355 . + . ID=Physo128269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40113;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 563179 564355 . + . ID=Physo128269;Parent=Physo128269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 563179 564076 . + 0 ID=Physo128269;Parent=Physo128269;rank=1 scaffold_4 . exon 563179 564076 . + . ID=Physo128269.1;Parent=Physo128269;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 564345 564355 . + 0 ID=Physo128269;Parent=Physo128269;rank=2 scaffold_4 . exon 564345 564355 . + . ID=Physo128269.2;Parent=Physo128269;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . repeat_region 572160 572198 . ? . description=trf scaffold_4 . repeat_region 572160 572202 . ? . description=trf scaffold_4 . repeat_region 572160 572206 . ? . description=trf scaffold_4 . repeat_region 577070 577090 . ? . description=trf scaffold_4 ensembl protein_coding_gene 568377 570319 . + . ID=Physo128270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40114;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 568377 570319 . + . ID=Physo128270;Parent=Physo128270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 568377 568382 . + 0 ID=Physo128270;Parent=Physo128270;rank=1 scaffold_4 . exon 568377 568382 . + . ID=Physo128270.1;Parent=Physo128270;constitutive=1;rank=1 scaffold_4 . CDS 568435 569009 . + 0 ID=Physo128270;Parent=Physo128270;rank=2 scaffold_4 . exon 568435 569009 . + . ID=Physo128270.2;Parent=Physo128270;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 569262 570132 . + 0 ID=Physo128270;Parent=Physo128270;rank=3 scaffold_4 . exon 569262 570132 . + . ID=Physo128270.3;Parent=Physo128270;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 570194 570319 . + 0 ID=Physo128270;Parent=Physo128270;rank=4 scaffold_4 . exon 570194 570319 . + . ID=Physo128270.4;Parent=Physo128270;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 570428 571054 . - . ID=Physo128271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40115;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 570428 571054 . - . ID=Physo128271;Parent=Physo128271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 570428 571054 . - 0 ID=Physo128271;Parent=Physo128271;rank=1 scaffold_4 . exon 570428 571054 . - . ID=Physo128271.1;Parent=Physo128271;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 571773 572765 . + . ID=Physo128272;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40116;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 571773 572765 . + . ID=Physo128272;Parent=Physo128272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 571773 572765 . + 0 ID=Physo128272;Parent=Physo128272;rank=1 scaffold_4 . exon 571773 572765 . + . ID=Physo128272.1;Parent=Physo128272;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 575743 576990 . + . ID=Physo128273;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40117;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 575743 576990 . + . ID=Physo128273;Parent=Physo128273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 575743 576253 . + 0 ID=Physo128273;Parent=Physo128273;rank=1 scaffold_4 . exon 575743 576253 . + . ID=Physo128273.1;Parent=Physo128273;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 576508 576577 . + 0 ID=Physo128273;Parent=Physo128273;rank=2 scaffold_4 . exon 576508 576577 . + . ID=Physo128273.2;Parent=Physo128273;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 576651 576990 . + 0 ID=Physo128273;Parent=Physo128273;rank=3 scaffold_4 . exon 576651 576990 . + . ID=Physo128273.3;Parent=Physo128273;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 ensembl protein_coding_gene 577315 577818 . - . ID=Physo128274;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40118;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 577315 577818 . - . ID=Physo128274;Parent=Physo128274;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 577315 577818 . - 0 ID=Physo128274;Parent=Physo128274;rank=1 scaffold_4 . exon 577315 577818 . - . ID=Physo128274.1;Parent=Physo128274;constitutive=1;rank=1 scaffold_4 . repeat_region 578027 578040 . ? . description=dust scaffold_4 . repeat_region 579099 579118 . ? . description=dust scaffold_4 . biological_region 579187 579191 0.999 + . logic_name=eponine scaffold_4 . biological_region 579278 579281 0.999 - . logic_name=eponine scaffold_4 . biological_region 580008 580014 0.999 - . logic_name=eponine scaffold_4 . biological_region 580482 580485 0.999 - . logic_name=eponine scaffold_4 . biological_region 580719 580723 0.999 + . logic_name=eponine scaffold_4 . repeat_region 583827 583837 . ? . description=dust scaffold_4 . biological_region 584476 584481 0.999 - . logic_name=eponine scaffold_4 . repeat_region 584549 584556 . ? . description=dust scaffold_4 . repeat_region 584912 584924 . ? . description=dust scaffold_4 . repeat_region 586431 586438 . ? . description=dust scaffold_4 ensembl protein_coding_gene 578308 580216 . + . ID=Physo128275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40119;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 578308 580216 . + . ID=Physo128275;Parent=Physo128275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 578308 578340 . + 0 ID=Physo128275;Parent=Physo128275;rank=1 scaffold_4 . exon 578308 578340 . + . ID=Physo128275.1;Parent=Physo128275;constitutive=1;rank=1 scaffold_4 . CDS 578545 578555 . + 0 ID=Physo128275;Parent=Physo128275;rank=2 scaffold_4 . exon 578545 578555 . + . ID=Physo128275.2;Parent=Physo128275;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 578814 579658 . + 0 ID=Physo128275;Parent=Physo128275;rank=3 scaffold_4 . exon 578814 579658 . + . ID=Physo128275.3;Parent=Physo128275;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 579828 580216 . + 0 ID=Physo128275;Parent=Physo128275;rank=4 scaffold_4 . exon 579828 580216 . + . ID=Physo128275.4;Parent=Physo128275;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . repeat_region 589353 591649 . - . description=GypsyPi-1c_I-int scaffold_4 ensembl protein_coding_gene 587422 594518 . - . ID=Physo128276;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40120;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 587422 594518 . - . ID=Physo128276;Parent=Physo128276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 587422 587633 . - 0 ID=Physo128276;Parent=Physo128276;rank=8 scaffold_4 . exon 587422 587633 . - . ID=Physo128276.8;Parent=Physo128276;constitutive=1;ensembl_phase=1;rank=8 scaffold_4 . CDS 587725 587884 . - 0 ID=Physo128276;Parent=Physo128276;rank=7 scaffold_4 . exon 587725 587884 . - . ID=Physo128276.7;Parent=Physo128276;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_4 . CDS 587927 587985 . - 0 ID=Physo128276;Parent=Physo128276;rank=6 scaffold_4 . exon 587927 587985 . - . ID=Physo128276.6;Parent=Physo128276;constitutive=1;ensembl_phase=1;rank=6 scaffold_4 . CDS 588079 588214 . - 0 ID=Physo128276;Parent=Physo128276;rank=5 scaffold_4 . exon 588079 588214 . - . ID=Physo128276.5;Parent=Physo128276;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_4 . CDS 588282 588647 . - 0 ID=Physo128276;Parent=Physo128276;rank=4 scaffold_4 . exon 588282 588647 . - . ID=Physo128276.4;Parent=Physo128276;constitutive=1;rank=4 scaffold_4 . CDS 588863 592970 . - 0 ID=Physo128276;Parent=Physo128276;rank=3 scaffold_4 . exon 588863 592970 . - . ID=Physo128276.3;Parent=Physo128276;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 593084 594160 . - 0 ID=Physo128276;Parent=Physo128276;rank=2 scaffold_4 . exon 593084 594160 . - . ID=Physo128276.2;Parent=Physo128276;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 594322 594518 . - 0 ID=Physo128276;Parent=Physo128276;rank=1 scaffold_4 . exon 594322 594518 . - . ID=Physo128276.1;Parent=Physo128276;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 596442 597818 . + . ID=Physo128277;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40121;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 596442 597818 . + . ID=Physo128277;Parent=Physo128277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 596442 597287 . + 0 ID=Physo128277;Parent=Physo128277;rank=1 scaffold_4 . exon 596442 597287 . + . ID=Physo128277.1;Parent=Physo128277;constitutive=1;rank=1 scaffold_4 . CDS 597351 597818 . + 0 ID=Physo128277;Parent=Physo128277;rank=2 scaffold_4 . biological_region 599091 599097 0.999 + . logic_name=eponine scaffold_4 . biological_region 599120 599125 0.999 + . logic_name=eponine scaffold_4 . biological_region 599173 599176 0.999 - . logic_name=eponine scaffold_4 . biological_region 599189 599197 0.999 - . logic_name=eponine scaffold_4 . biological_region 599246 599250 0.999 + . logic_name=eponine scaffold_4 . biological_region 600311 600315 0.999 + . logic_name=eponine scaffold_4 . biological_region 600389 600396 0.999 + . logic_name=eponine scaffold_4 . biological_region 600412 600418 0.999 - . logic_name=eponine scaffold_4 . biological_region 600435 600441 0.999 + . logic_name=eponine scaffold_4 . biological_region 600469 600474 0.999 + . logic_name=eponine scaffold_4 . biological_region 600481 600485 0.999 - . logic_name=eponine scaffold_4 . biological_region 600908 600912 0.999 + . logic_name=eponine scaffold_4 . biological_region 601436 601436 0.999 + . logic_name=eponine scaffold_4 . repeat_region 601858 601884 . ? . description=trf scaffold_4 . biological_region 602110 602111 0.999 + . logic_name=eponine scaffold_4 . repeat_region 603938 603955 . ? . description=dust scaffold_4 . repeat_region 606318 606350 . ? . description=dust scaffold_4 . exon 597351 597818 . + . ID=Physo128277.2;Parent=Physo128277;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 597874 599290 . - . ID=Physo128278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40122;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 597874 599290 . - . ID=Physo128278;Parent=Physo128278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 597874 597906 . - 0 ID=Physo128278;Parent=Physo128278;rank=6 scaffold_4 . exon 597874 597906 . - . ID=Physo128278.6;Parent=Physo128278;constitutive=1;rank=6 scaffold_4 . CDS 598061 598268 . - 0 ID=Physo128278;Parent=Physo128278;rank=5 scaffold_4 . exon 598061 598268 . - . ID=Physo128278.5;Parent=Physo128278;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 . CDS 598338 598618 . - 0 ID=Physo128278;Parent=Physo128278;rank=4 scaffold_4 . exon 598338 598618 . - . ID=Physo128278.4;Parent=Physo128278;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_4 . CDS 598699 598824 . - 0 ID=Physo128278;Parent=Physo128278;rank=3 scaffold_4 . exon 598699 598824 . - . ID=Physo128278.3;Parent=Physo128278;constitutive=1;rank=3 scaffold_4 . CDS 598910 598996 . - 0 ID=Physo128278;Parent=Physo128278;rank=2 scaffold_4 . exon 598910 598996 . - . ID=Physo128278.2;Parent=Physo128278;constitutive=1;rank=2 scaffold_4 . CDS 599111 599290 . - 0 ID=Physo128278;Parent=Physo128278;rank=1 scaffold_4 . exon 599111 599290 . - . ID=Physo128278.1;Parent=Physo128278;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 599667 600716 . - . ID=Physo128279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40123;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 599667 600716 . - . ID=Physo128279;Parent=Physo128279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 599667 600593 . - 0 ID=Physo128279;Parent=Physo128279;rank=1 scaffold_4 . exon 599667 600716 . - . ID=Physo128279.1;Parent=Physo128279;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 603124 603626 . - . ID=Physo128280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40124;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 603124 603626 . - . ID=Physo128280;Parent=Physo128280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 603124 603415 . - 0 ID=Physo128280;Parent=Physo128280;rank=2 scaffold_4 . exon 603124 603415 . - . ID=Physo128280.2;Parent=Physo128280;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 603496 603626 . - 0 ID=Physo128280;Parent=Physo128280;rank=1 scaffold_4 . exon 603496 603626 . - . ID=Physo128280.1;Parent=Physo128280;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . repeat_region 607896 609346 . + . description=Gypsy-1-I_PI-int scaffold_4 ensembl protein_coding_gene 617099 618919 . + . ID=Physo128281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40125;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 617099 618919 . + . ID=Physo128281;Parent=Physo128281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 617099 617222 . + 0 ID=Physo128281;Parent=Physo128281;rank=1 scaffold_4 . exon 617099 617222 . + . ID=Physo128281.1;Parent=Physo128281;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 617355 618919 . + 0 ID=Physo128281;Parent=Physo128281;rank=2 scaffold_4 . biological_region 617669 617671 0.999 + . logic_name=eponine scaffold_4 . biological_region 618032 618035 0.999 + . logic_name=eponine scaffold_4 . repeat_region 619184 619204 . ? . description=trf scaffold_4 . repeat_region 620995 621039 . ? . description=trf scaffold_4 . repeat_region 623166 623186 . ? . description=trf scaffold_4 . repeat_region 626139 626177 . ? . description=trf scaffold_4 ensembl protein_coding_gene 622187 625756 . - . ID=Physo108259;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40010;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 622187 625756 . - . ID=Physo108259;Parent=Physo108259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 622187 625756 . - 0 ID=Physo108259;Parent=Physo108259;rank=1 scaffold_4 . exon 622187 625756 . - . ID=Physo108259.1;Parent=Physo108259;constitutive=1;rank=1 scaffold_4 . exon 617355 618919 . + . ID=Physo128281.2;Parent=Physo128281;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 620954 622103 . + . ID=Physo128282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40126;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 620954 622103 . + . ID=Physo128282;Parent=Physo128282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 620954 621019 . + 0 ID=Physo128282;Parent=Physo128282;rank=1 scaffold_4 . exon 620954 621019 . + . ID=Physo128282.1;Parent=Physo128282;constitutive=1;rank=1 scaffold_4 . CDS 621093 622040 . + 0 ID=Physo128282;Parent=Physo128282;rank=2 scaffold_4 . exon 621093 622103 . + . ID=Physo128282.2;Parent=Physo128282;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_4 ensembl protein_coding_gene 626045 627104 . + . ID=Physo128284;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40128;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 626045 627104 . + . ID=Physo128284;Parent=Physo128284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 626045 626398 . + . ID=Physo128284.1;Parent=Physo128284;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 . CDS 626067 626398 . + 0 ID=Physo128284;Parent=Physo128284;rank=1 scaffold_4 . CDS 626476 626565 . + 0 ID=Physo128284;Parent=Physo128284;rank=2 scaffold_4 . exon 626476 626565 . + . ID=Physo128284.2;Parent=Physo128284;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 626645 626928 . + 0 ID=Physo128284;Parent=Physo128284;rank=3 scaffold_4 . exon 626645 626928 . + . ID=Physo128284.3;Parent=Physo128284;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 627073 627104 . + 0 ID=Physo128284;Parent=Physo128284;rank=4 scaffold_4 . exon 627073 627104 . + . ID=Physo128284.4;Parent=Physo128284;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . repeat_region 633547 633557 . ? . description=dust scaffold_4 ensembl protein_coding_gene 629324 631663 . + . ID=Physo128286;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40130;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 629324 631663 . + . ID=Physo128286;Parent=Physo128286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 629324 631663 . + 0 ID=Physo128286;Parent=Physo128286;rank=1 scaffold_4 . exon 629324 631663 . + . ID=Physo128286.1;Parent=Physo128286;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 632762 633541 . + . ID=Physo128288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40132;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 632762 633541 . + . ID=Physo128288;Parent=Physo128288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 632762 633541 . + 0 ID=Physo128288;Parent=Physo128288;rank=1 scaffold_4 . exon 632762 633541 . + . ID=Physo128288.1;Parent=Physo128288;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 636840 638104 . - . ID=Physo128289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40133;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 636840 638104 . - . ID=Physo128289;Parent=Physo128289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 636840 636863 . - 0 ID=Physo128289;Parent=Physo128289;rank=3 scaffold_4 . exon 636840 636863 . - . ID=Physo128289.3;Parent=Physo128289;constitutive=1;rank=3 scaffold_4 . CDS 636951 637446 . - 0 ID=Physo128289;Parent=Physo128289;rank=2 scaffold_4 . exon 636951 637446 . - . ID=Physo128289.2;Parent=Physo128289;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 637734 638104 . - 0 ID=Physo128289;Parent=Physo128289;rank=1 scaffold_4 ensembl protein_coding_gene 627389 629107 . - . ID=Physo155447;biotype=protein_coding;external_name=C_scaffold_4000015;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 627389 629107 . - . ID=Physo155447;Parent=Physo155447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 627389 627562 . - 0 ID=Physo155447;Parent=Physo155447;rank=2 scaffold_4 . exon 627389 627562 . - . ID=Physo155447.2;Parent=Physo155447;constitutive=1;rank=2 scaffold_4 . CDS 627644 629107 . - 0 ID=Physo155447;Parent=Physo155447;rank=1 scaffold_4 . exon 627644 629107 . - . ID=Physo155447.1;Parent=Physo155447;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 631788 632610 . - . ID=Physo155449;biotype=protein_coding;external_name=C_scaffold_4000017;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 631788 632610 . - . ID=Physo155449;Parent=Physo155449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 631788 631892 . - 0 ID=Physo155449;Parent=Physo155449;rank=4 scaffold_4 . exon 631788 631892 . - . ID=Physo155449.4;Parent=Physo155449;constitutive=1;rank=4 scaffold_4 . CDS 631923 631995 . - 0 ID=Physo155449;Parent=Physo155449;rank=3 scaffold_4 . exon 631923 631995 . - . ID=Physo155449.3;Parent=Physo155449;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 632093 632415 . - 0 ID=Physo155449;Parent=Physo155449;rank=2 scaffold_4 . exon 632093 632415 . - . ID=Physo155449.2;Parent=Physo155449;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 632446 632610 . - 0 ID=Physo155449;Parent=Physo155449;rank=1 scaffold_4 . exon 632446 632610 . - . ID=Physo155449.1;Parent=Physo155449;constitutive=1;rank=1 scaffold_4 . biological_region 638080 638083 0.999 - . logic_name=eponine scaffold_4 . repeat_region 638489 638521 . ? . description=trf scaffold_4 . repeat_region 641139 641171 . ? . description=trf scaffold_4 . repeat_region 643241 643275 . ? . description=trf scaffold_4 . repeat_region 643256 643417 . ? . description=trf scaffold_4 . biological_region 643319 643319 0.999 + . logic_name=eponine scaffold_4 . biological_region 643416 643419 0.999 + . logic_name=eponine scaffold_4 . biological_region 645251 645254 0.999 - . logic_name=eponine scaffold_4 . exon 637734 638104 . - . ID=Physo128289.1;Parent=Physo128289;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 640342 641563 . + . ID=Physo128290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40134;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 640342 641563 . + . ID=Physo128290;Parent=Physo128290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 640342 640752 . + 0 ID=Physo128290;Parent=Physo128290;rank=1 scaffold_4 . exon 640342 640752 . + . ID=Physo128290.1;Parent=Physo128290;constitutive=1;rank=1 scaffold_4 . CDS 640829 640948 . + 0 ID=Physo128290;Parent=Physo128290;rank=2 scaffold_4 . exon 640829 640948 . + . ID=Physo128290.2;Parent=Physo128290;constitutive=1;rank=2 scaffold_4 . CDS 640970 641563 . + 0 ID=Physo128290;Parent=Physo128290;rank=3 scaffold_4 . exon 640970 641563 . + . ID=Physo128290.3;Parent=Physo128290;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 643731 645564 . - . ID=Physo128291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40135;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 643731 645564 . - . ID=Physo128291;Parent=Physo128291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 643731 643841 . - 0 ID=Physo128291;Parent=Physo128291;rank=4 scaffold_4 . exon 643731 643841 . - . ID=Physo128291.4;Parent=Physo128291;constitutive=1;rank=4 scaffold_4 . CDS 643920 644104 . - 0 ID=Physo128291;Parent=Physo128291;rank=3 scaffold_4 . exon 643920 644104 . - . ID=Physo128291.3;Parent=Physo128291;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 644151 644484 . - 0 ID=Physo128291;Parent=Physo128291;rank=2 scaffold_4 . exon 644151 644484 . - . ID=Physo128291.2;Parent=Physo128291;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 644578 645564 . - 0 ID=Physo128291;Parent=Physo128291;rank=1 scaffold_4 . exon 644578 645564 . - . ID=Physo128291.1;Parent=Physo128291;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 647186 647481 . + . ID=Physo128292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40136;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 647186 647481 . + . ID=Physo128292;Parent=Physo128292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 647186 647255 . + . ID=Physo128292.1;Parent=Physo128292;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 647187 647255 . + 0 ID=Physo128292;Parent=Physo128292;rank=1 scaffold_4 . CDS 647407 647481 . + 0 ID=Physo128292;Parent=Physo128292;rank=2 scaffold_4 . exon 647407 647481 . + . ID=Physo128292.2;Parent=Physo128292;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 655729 657552 . - . ID=Physo128296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40140;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 655729 657552 . - . ID=Physo128296;Parent=Physo128296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 655729 657552 . - 0 ID=Physo128296;Parent=Physo128296;rank=1 scaffold_4 . exon 655729 657552 . - . ID=Physo128296.1;Parent=Physo128296;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 647769 648371 . - . ID=Physo155451;biotype=protein_coding;external_name=C_scaffold_4000019;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 647769 648371 . - . ID=Physo155451;Parent=Physo155451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 647769 647936 . - 0 ID=Physo155451;Parent=Physo155451;rank=2 scaffold_4 . exon 647769 647936 . - . ID=Physo155451.2;Parent=Physo155451;constitutive=1;rank=2 scaffold_4 . CDS 648003 648371 . - 0 ID=Physo155451;Parent=Physo155451;rank=1 scaffold_4 . exon 648003 648371 . - . ID=Physo155451.1;Parent=Physo155451;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 648820 650751 . + . ID=Physo155453;biotype=protein_coding;external_name=C_scaffold_4000021;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 648820 650751 . + . ID=Physo155453;Parent=Physo155453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 648820 648873 . + . ID=Physo155453.1;Parent=Physo155453;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 . CDS 648821 648873 . + 0 ID=Physo155453;Parent=Physo155453;rank=1 scaffold_4 . CDS 648936 648996 . + 0 ID=Physo155453;Parent=Physo155453;rank=2 scaffold_4 . exon 648936 648996 . + . ID=Physo155453.2;Parent=Physo155453;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 649072 649142 . + 0 ID=Physo155453;Parent=Physo155453;rank=3 scaffold_4 . exon 649072 649142 . + . ID=Physo155453.3;Parent=Physo155453;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 649188 649556 . + 0 ID=Physo155453;Parent=Physo155453;rank=4 scaffold_4 . exon 649188 649556 . + . ID=Physo155453.4;Parent=Physo155453;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_4 . CDS 649734 650010 . + 0 ID=Physo155453;Parent=Physo155453;rank=5 scaffold_4 . exon 649734 650010 . + . ID=Physo155453.5;Parent=Physo155453;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 . CDS 650050 650751 . + 0 ID=Physo155453;Parent=Physo155453;rank=6 scaffold_4 . exon 650050 650751 . + . ID=Physo155453.6;Parent=Physo155453;constitutive=1;rank=6 scaffold_4 ensembl protein_coding_gene 650820 654050 . - . ID=Physo155455;biotype=protein_coding;external_name=C_scaffold_4000023;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 650820 654050 . - . ID=Physo155455;Parent=Physo155455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 650820 651386 . - 0 ID=Physo155455;Parent=Physo155455;rank=5 scaffold_4 . exon 650820 651386 . - . ID=Physo155455.5;Parent=Physo155455;constitutive=1;rank=5 scaffold_4 . CDS 651450 651694 . - 0 ID=Physo155455;Parent=Physo155455;rank=4 scaffold_4 . exon 651450 651694 . - . ID=Physo155455.4;Parent=Physo155455;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 652058 653463 . - 0 ID=Physo155455;Parent=Physo155455;rank=3 scaffold_4 . exon 652058 653463 . - . ID=Physo155455.3;Parent=Physo155455;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 653509 653737 . - 0 ID=Physo155455;Parent=Physo155455;rank=2 scaffold_4 . exon 653509 653737 . - . ID=Physo155455.2;Parent=Physo155455;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 653792 654050 . - 0 ID=Physo155455;Parent=Physo155455;rank=1 scaffold_4 . exon 653792 654050 . - . ID=Physo155455.1;Parent=Physo155455;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . repeat_region 658219 658282 . ? . description=trf scaffold_4 . biological_region 659485 659488 0.999 + . logic_name=eponine scaffold_4 . biological_region 659944 659949 0.999 + . logic_name=eponine scaffold_4 . biological_region 661155 661156 0.999 + . logic_name=eponine scaffold_4 . biological_region 661204 661208 0.999 - . logic_name=eponine scaffold_4 . biological_region 661233 661236 0.999 - . logic_name=eponine scaffold_4 . biological_region 665464 665466 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 658485 660392 . - . ID=Physo128297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40141;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 658485 660392 . - . ID=Physo128297;Parent=Physo128297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 658485 658664 . - 0 ID=Physo128297;Parent=Physo128297;rank=2 scaffold_4 . exon 658485 658664 . - . ID=Physo128297.2;Parent=Physo128297;constitutive=1;rank=2 scaffold_4 . CDS 658739 660361 . - 0 ID=Physo128297;Parent=Physo128297;rank=1 scaffold_4 . exon 658739 660392 . - . ID=Physo128297.1;Parent=Physo128297;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 660840 661909 . + . ID=Physo128298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40142;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 660840 661909 . + . ID=Physo128298;Parent=Physo128298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 660840 661354 . + 0 ID=Physo128298;Parent=Physo128298;rank=1 scaffold_4 . exon 660840 661354 . + . ID=Physo128298.1;Parent=Physo128298;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 661444 661909 . + 0 ID=Physo128298;Parent=Physo128298;rank=2 scaffold_4 . exon 661444 661909 . + . ID=Physo128298.2;Parent=Physo128298;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 662327 663623 . - . ID=Physo128299;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40143;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 662327 663623 . - . ID=Physo128299;Parent=Physo128299;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 662327 662341 . - 0 ID=Physo128299;Parent=Physo128299;rank=3 scaffold_4 . exon 662327 662341 . - . ID=Physo128299.3;Parent=Physo128299;constitutive=1;rank=3 scaffold_4 . CDS 662367 663364 . - 0 ID=Physo128299;Parent=Physo128299;rank=2 scaffold_4 . exon 662367 663364 . - . ID=Physo128299.2;Parent=Physo128299;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 663482 663623 . - 0 ID=Physo128299;Parent=Physo128299;rank=1 scaffold_4 . exon 663482 663623 . - . ID=Physo128299.1;Parent=Physo128299;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 664221 664872 . + . ID=Physo128300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40144;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 664221 664872 . + . ID=Physo128300;Parent=Physo128300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 664221 664369 . + 0 ID=Physo128300;Parent=Physo128300;rank=1 scaffold_4 . exon 664221 664369 . + . ID=Physo128300.1;Parent=Physo128300;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 664440 664521 . + 0 ID=Physo128300;Parent=Physo128300;rank=2 scaffold_4 . exon 664440 664521 . + . ID=Physo128300.2;Parent=Physo128300;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 664594 664872 . + 0 ID=Physo128300;Parent=Physo128300;rank=3 scaffold_4 . exon 664594 664872 . + . ID=Physo128300.3;Parent=Physo128300;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 673120 674316 . - . ID=Physo108261;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40012;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 673120 674316 . - . ID=Physo108261;Parent=Physo108261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 673120 674316 . - 0 ID=Physo108261;Parent=Physo108261;rank=1 scaffold_4 . exon 673120 674316 . - . ID=Physo108261.1;Parent=Physo108261;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 667337 669618 . + . ID=Physo128301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40145;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 667337 669618 . + . ID=Physo128301;Parent=Physo128301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 667337 667552 . + 0 ID=Physo128301;Parent=Physo128301;rank=1 scaffold_4 . exon 667337 667552 . + . ID=Physo128301.1;Parent=Physo128301;constitutive=1;rank=1 scaffold_4 . CDS 667632 667980 . + 0 ID=Physo128301;Parent=Physo128301;rank=2 scaffold_4 . exon 667632 667980 . + . ID=Physo128301.2;Parent=Physo128301;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 668153 669618 . + 0 ID=Physo128301;Parent=Physo128301;rank=3 scaffold_4 . exon 668153 669618 . + . ID=Physo128301.3;Parent=Physo128301;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 ensembl protein_coding_gene 669710 672415 . - . ID=Physo128302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40146;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 669710 672415 . - . ID=Physo128302;Parent=Physo128302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 669710 672415 . - 0 ID=Physo128302;Parent=Physo128302;rank=1 scaffold_4 . exon 669710 672415 . - . ID=Physo128302.1;Parent=Physo128302;constitutive=1;rank=1 scaffold_4 . biological_region 677773 677773 0.999 + . logic_name=eponine scaffold_4 . repeat_region 680913 680927 . ? . description=dust scaffold_4 . repeat_region 682274 682296 . ? . description=dust scaffold_4 . biological_region 685408 685414 0.999 - . logic_name=eponine scaffold_4 . biological_region 685420 685426 0.999 + . logic_name=eponine scaffold_4 . biological_region 685765 685766 0.999 - . logic_name=eponine scaffold_4 . biological_region 686883 686884 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 677472 678673 . - . ID=Physo128304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40148;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 677472 678673 . - . ID=Physo128304;Parent=Physo128304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 677472 677996 . - 0 ID=Physo128304;Parent=Physo128304;rank=2 scaffold_4 . exon 677472 677996 . - . ID=Physo128304.2;Parent=Physo128304;constitutive=1;rank=2 scaffold_4 . CDS 678065 678673 . - 0 ID=Physo128304;Parent=Physo128304;rank=1 scaffold_4 . exon 678065 678673 . - . ID=Physo128304.1;Parent=Physo128304;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 680688 682208 . + . ID=Physo128305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40149;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 680688 682208 . + . ID=Physo128305;Parent=Physo128305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 680688 680904 . + . ID=Physo128305.1;Parent=Physo128305;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 680712 680904 . + 0 ID=Physo128305;Parent=Physo128305;rank=1 scaffold_4 . CDS 681034 681471 . + 0 ID=Physo128305;Parent=Physo128305;rank=2 scaffold_4 . exon 681034 681471 . + . ID=Physo128305.2;Parent=Physo128305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 681549 681758 . + 0 ID=Physo128305;Parent=Physo128305;rank=3 scaffold_4 . exon 681549 681758 . + . ID=Physo128305.3;Parent=Physo128305;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 681844 682208 . + 0 ID=Physo128305;Parent=Physo128305;rank=4 scaffold_4 . exon 681844 682208 . + . ID=Physo128305.4;Parent=Physo128305;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 ensembl protein_coding_gene 682444 683889 . + . ID=Physo128306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40150;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 682444 683889 . + . ID=Physo128306;Parent=Physo128306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 682444 682639 . + 0 ID=Physo128306;Parent=Physo128306;rank=1 scaffold_4 . exon 682444 682639 . + . ID=Physo128306.1;Parent=Physo128306;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 682722 683198 . + 0 ID=Physo128306;Parent=Physo128306;rank=2 scaffold_4 . exon 682722 683198 . + . ID=Physo128306.2;Parent=Physo128306;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 683279 683488 . + 0 ID=Physo128306;Parent=Physo128306;rank=3 scaffold_4 . exon 683279 683488 . + . ID=Physo128306.3;Parent=Physo128306;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 683576 683889 . + 0 ID=Physo128306;Parent=Physo128306;rank=4 scaffold_4 . exon 683576 683889 . + . ID=Physo128306.4;Parent=Physo128306;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 ensembl protein_coding_gene 685277 687949 . + . ID=Physo128307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40151;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 685277 687949 . + . ID=Physo128307;Parent=Physo128307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 685277 686267 . + 0 ID=Physo128307;Parent=Physo128307;rank=1 scaffold_4 . exon 685277 686267 . + . ID=Physo128307.1;Parent=Physo128307;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 686343 686617 . + 0 ID=Physo128307;Parent=Physo128307;rank=2 scaffold_4 . exon 686343 686617 . + . ID=Physo128307.2;Parent=Physo128307;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 686660 687949 . + 0 ID=Physo128307;Parent=Physo128307;rank=3 scaffold_4 . exon 686660 687949 . + . ID=Physo128307.3;Parent=Physo128307;constitutive=1;rank=3 scaffold_4 . repeat_region 693280 693326 . ? . description=trf scaffold_4 ensembl protein_coding_gene 688014 693643 . - . ID=Physo128308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40152;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 688014 693643 . - . ID=Physo128308;Parent=Physo128308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 688014 690818 . - . ID=Physo128308.4;Parent=Physo128308;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_4 . CDS 688096 690818 . - 0 ID=Physo128308;Parent=Physo128308;rank=4 scaffold_4 . CDS 691061 691174 . - 0 ID=Physo128308;Parent=Physo128308;rank=3 scaffold_4 . exon 691061 691174 . - . ID=Physo128308.3;Parent=Physo128308;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 691221 693528 . - 0 ID=Physo128308;Parent=Physo128308;rank=2 scaffold_4 . exon 691221 693528 . - . ID=Physo128308.2;Parent=Physo128308;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 693620 693643 . - 0 ID=Physo128308;Parent=Physo128308;rank=1 scaffold_4 . exon 693620 693643 . - . ID=Physo128308.1;Parent=Physo128308;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 693874 695055 . - . ID=Physo128309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40153;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 693874 695055 . - . ID=Physo128309;Parent=Physo128309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 693874 695055 . - 0 ID=Physo128309;Parent=Physo128309;rank=1 scaffold_4 . exon 693874 695055 . - . ID=Physo128309.1;Parent=Physo128309;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 696073 698919 . + . ID=Physo128310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40154;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 696073 698919 . + . ID=Physo128310;Parent=Physo128310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 696073 698919 . + 0 ID=Physo128310;Parent=Physo128310;rank=1 scaffold_4 . exon 696073 698919 . + . ID=Physo128310.1;Parent=Physo128310;constitutive=1;rank=1 scaffold_4 . biological_region 696927 696933 0.999 - . logic_name=eponine scaffold_4 . biological_region 697231 697231 0.999 + . logic_name=eponine scaffold_4 . repeat_region 699960 699990 . ? . description=dust scaffold_4 . biological_region 700576 700580 0.999 + . logic_name=eponine scaffold_4 . biological_region 700671 700678 0.999 - . logic_name=eponine scaffold_4 . biological_region 704653 704656 0.999 - . logic_name=eponine scaffold_4 . biological_region 705956 705961 0.999 + . logic_name=eponine scaffold_4 . biological_region 706312 706319 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 700467 701000 . + . ID=Physo108262;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40013;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 700467 701000 . + . ID=Physo108262;Parent=Physo108262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 700467 701000 . + 0 ID=Physo108262;Parent=Physo108262;rank=1 scaffold_4 . exon 700467 701000 . + . ID=Physo108262.1;Parent=Physo108262;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 699315 700321 . - . ID=Physo128311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40155;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 699315 700321 . - . ID=Physo128311;Parent=Physo128311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 699315 699338 . - 0 ID=Physo128311;Parent=Physo128311;rank=3 scaffold_4 . exon 699315 699338 . - . ID=Physo128311.3;Parent=Physo128311;constitutive=1;rank=3 scaffold_4 . CDS 699451 699956 . - 0 ID=Physo128311;Parent=Physo128311;rank=2 scaffold_4 . exon 699451 699956 . - . ID=Physo128311.2;Parent=Physo128311;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 700039 700321 . - 0 ID=Physo128311;Parent=Physo128311;rank=1 scaffold_4 . exon 700039 700321 . - . ID=Physo128311.1;Parent=Physo128311;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 703791 705064 . - . ID=Physo128313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40157;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 703791 705064 . - . ID=Physo128313;Parent=Physo128313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 703791 703886 . - 0 ID=Physo128313;Parent=Physo128313;rank=2 scaffold_4 . exon 703791 703886 . - . ID=Physo128313.2;Parent=Physo128313;constitutive=1;rank=2 scaffold_4 . CDS 703961 705064 . - 0 ID=Physo128313;Parent=Physo128313;rank=1 scaffold_4 . exon 703961 705064 . - . ID=Physo128313.1;Parent=Physo128313;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 706057 707143 . + . ID=Physo128314;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40158;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 706057 707143 . + . ID=Physo128314;Parent=Physo128314;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 706057 706625 . + 0 ID=Physo128314;Parent=Physo128314;rank=1 scaffold_4 . exon 706057 706625 . + . ID=Physo128314.1;Parent=Physo128314;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 706712 706910 . + 0 ID=Physo128314;Parent=Physo128314;rank=2 scaffold_4 . exon 706712 707143 . + . ID=Physo128314.2;Parent=Physo128314;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 707452 707863 . + . ID=Physo108263;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40014;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 707452 707863 . + . ID=Physo108263;Parent=Physo108263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 707452 707863 . + . ID=Physo108263.1;Parent=Physo108263;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 707486 707863 . + 0 ID=Physo108263;Parent=Physo108263;rank=1 scaffold_4 ensembl protein_coding_gene 708082 709490 . - . ID=Physo128316;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40160;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 708082 709490 . - . ID=Physo128316;Parent=Physo128316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 708082 708142 . - 0 ID=Physo128316;Parent=Physo128316;rank=8 scaffold_4 . exon 708082 708142 . - . ID=Physo128316.8;Parent=Physo128316;constitutive=1;ensembl_phase=2;rank=8 scaffold_4 . CDS 708213 708337 . - 0 ID=Physo128316;Parent=Physo128316;rank=7 scaffold_4 . exon 708213 708337 . - . ID=Physo128316.7;Parent=Physo128316;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_4 . CDS 708426 708512 . - 0 ID=Physo128316;Parent=Physo128316;rank=6 scaffold_4 . exon 708426 708512 . - . ID=Physo128316.6;Parent=Physo128316;constitutive=1;rank=6 scaffold_4 . CDS 708609 708650 . - 0 ID=Physo128316;Parent=Physo128316;rank=5 scaffold_4 . exon 708609 708650 . - . ID=Physo128316.5;Parent=Physo128316;constitutive=1;rank=5 scaffold_4 . CDS 708722 708892 . - 0 ID=Physo128316;Parent=Physo128316;rank=4 scaffold_4 . exon 708722 708892 . - . ID=Physo128316.4;Parent=Physo128316;constitutive=1;rank=4 scaffold_4 . CDS 708975 709105 . - 0 ID=Physo128316;Parent=Physo128316;rank=3 scaffold_4 . exon 708975 709105 . - . ID=Physo128316.3;Parent=Physo128316;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 709229 709333 . - 0 ID=Physo128316;Parent=Physo128316;rank=2 scaffold_4 . exon 709229 709333 . - . ID=Physo128316.2;Parent=Physo128316;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 709402 709462 . - 0 ID=Physo128316;Parent=Physo128316;rank=1 scaffold_4 . exon 709402 709490 . - . ID=Physo128316.1;Parent=Physo128316;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 709653 711465 . + . ID=Physo128317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40161;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 709653 711465 . + . ID=Physo128317;Parent=Physo128317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 709653 709741 . + 0 ID=Physo128317;Parent=Physo128317;rank=1 scaffold_4 . exon 709653 709741 . + . ID=Physo128317.1;Parent=Physo128317;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 709833 709914 . + 0 ID=Physo128317;Parent=Physo128317;rank=2 scaffold_4 . exon 709833 709914 . + . ID=Physo128317.2;Parent=Physo128317;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 710002 710110 . + 0 ID=Physo128317;Parent=Physo128317;rank=3 scaffold_4 . exon 710002 710110 . + . ID=Physo128317.3;Parent=Physo128317;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . CDS 710202 710310 . + 0 ID=Physo128317;Parent=Physo128317;rank=4 scaffold_4 . exon 710202 710310 . + . ID=Physo128317.4;Parent=Physo128317;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_4 . CDS 710381 710464 . + 0 ID=Physo128317;Parent=Physo128317;rank=5 scaffold_4 . exon 710381 710464 . + . ID=Physo128317.5;Parent=Physo128317;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_4 . CDS 710535 711357 . + 0 ID=Physo128317;Parent=Physo128317;rank=6 scaffold_4 . exon 710535 711465 . + . ID=Physo128317.6;Parent=Physo128317;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_4 ensembl protein_coding_gene 711535 712629 . - . ID=Physo128318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40162;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 711535 712629 . - . ID=Physo128318;Parent=Physo128318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 711535 711591 . - 0 ID=Physo128318;Parent=Physo128318;rank=6 scaffold_4 . exon 711535 711591 . - . ID=Physo128318.6;Parent=Physo128318;constitutive=1;rank=6 scaffold_4 . CDS 711659 711706 . - 0 ID=Physo128318;Parent=Physo128318;rank=5 scaffold_4 . exon 711659 711706 . - . ID=Physo128318.5;Parent=Physo128318;constitutive=1;rank=5 scaffold_4 . CDS 711785 712171 . - 0 ID=Physo128318;Parent=Physo128318;rank=4 scaffold_4 . exon 711785 712171 . - . ID=Physo128318.4;Parent=Physo128318;constitutive=1;rank=4 scaffold_4 . CDS 712236 712301 . - 0 ID=Physo128318;Parent=Physo128318;rank=3 scaffold_4 . exon 712236 712301 . - . ID=Physo128318.3;Parent=Physo128318;constitutive=1;rank=3 scaffold_4 . CDS 712388 712451 . - 0 ID=Physo128318;Parent=Physo128318;rank=2 scaffold_4 . exon 712388 712451 . - . ID=Physo128318.2;Parent=Physo128318;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 712592 712629 . - 0 ID=Physo128318;Parent=Physo128318;rank=1 scaffold_4 . exon 712592 712629 . - . ID=Physo128318.1;Parent=Physo128318;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 713534 715231 . + . ID=Physo128319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40163;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 713534 715231 . + . ID=Physo128319;Parent=Physo128319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 713534 715231 . + 0 ID=Physo128319;Parent=Physo128319;rank=1 scaffold_4 . exon 713534 715231 . + . ID=Physo128319.1;Parent=Physo128319;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 715370 717100 . + . ID=Physo128320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40164;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 715370 717100 . + . ID=Physo128320;Parent=Physo128320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 715370 717100 . + 0 ID=Physo128320;Parent=Physo128320;rank=1 scaffold_4 . exon 715370 717100 . + . ID=Physo128320.1;Parent=Physo128320;constitutive=1;rank=1 scaffold_4 . biological_region 724498 724499 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 726433 729573 . + . ID=Physo128322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40166;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 726433 729573 . + . ID=Physo128322;Parent=Physo128322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 726433 726943 . + 0 ID=Physo128322;Parent=Physo128322;rank=1 scaffold_4 . exon 726433 726943 . + . ID=Physo128322.1;Parent=Physo128322;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 727220 727290 . + 0 ID=Physo128322;Parent=Physo128322;rank=2 scaffold_4 . CDS 727585 727624 . + 0 ID=Physo128322;Parent=Physo128322;rank=3 scaffold_4 . CDS 727882 728036 . + 0 ID=Physo128322;Parent=Physo128322;rank=4 scaffold_4 . CDS 728085 728600 . + 0 ID=Physo128322;Parent=Physo128322;rank=5 scaffold_4 . CDS 728695 728838 . + 0 ID=Physo128322;Parent=Physo128322;rank=6 scaffold_4 . CDS 728925 729168 . + 0 ID=Physo128322;Parent=Physo128322;rank=7 scaffold_4 . CDS 729332 729573 . + 0 ID=Physo128322;Parent=Physo128322;rank=8 scaffold_4 ensembl protein_coding_gene 722327 725530 . - . ID=Physo155460;biotype=protein_coding;external_name=C_scaffold_4000028;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 722327 725530 . - . ID=Physo155460;Parent=Physo155460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 722327 722352 . - 0 ID=Physo155460;Parent=Physo155460;rank=13 scaffold_4 . exon 722327 722352 . - . ID=Physo155460.13;Parent=Physo155460;constitutive=1;ensembl_phase=1;rank=13 scaffold_4 . CDS 722400 722517 . - 0 ID=Physo155460;Parent=Physo155460;rank=12 scaffold_4 . exon 722400 722517 . - . ID=Physo155460.12;Parent=Physo155460;constitutive=1;ensembl_end_phase=1;rank=12 scaffold_4 . CDS 722659 722789 . - 0 ID=Physo155460;Parent=Physo155460;rank=11 scaffold_4 . exon 722659 722789 . - . ID=Physo155460.11;Parent=Physo155460;constitutive=1;ensembl_phase=1;rank=11 scaffold_4 . CDS 722886 723018 . - 0 ID=Physo155460;Parent=Physo155460;rank=10 scaffold_4 . exon 722886 723018 . - . ID=Physo155460.10;Parent=Physo155460;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_4 . CDS 723076 723135 . - 0 ID=Physo155460;Parent=Physo155460;rank=9 scaffold_4 . exon 723076 723135 . - . ID=Physo155460.9;Parent=Physo155460;constitutive=1;rank=9 scaffold_4 . CDS 723204 723515 . - 0 ID=Physo155460;Parent=Physo155460;rank=8 scaffold_4 . exon 723204 723515 . - . ID=Physo155460.8;Parent=Physo155460;constitutive=1;rank=8 scaffold_4 . CDS 723853 723960 . - 0 ID=Physo155460;Parent=Physo155460;rank=7 scaffold_4 . exon 723853 723960 . - . ID=Physo155460.7;Parent=Physo155460;constitutive=1;rank=7 scaffold_4 . CDS 724036 724197 . - 0 ID=Physo155460;Parent=Physo155460;rank=6 scaffold_4 . exon 724036 724197 . - . ID=Physo155460.6;Parent=Physo155460;constitutive=1;rank=6 scaffold_4 . CDS 724339 724408 . - 0 ID=Physo155460;Parent=Physo155460;rank=5 scaffold_4 . exon 724339 724408 . - . ID=Physo155460.5;Parent=Physo155460;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 . CDS 724529 724641 . - 0 ID=Physo155460;Parent=Physo155460;rank=4 scaffold_4 . exon 724529 724641 . - . ID=Physo155460.4;Parent=Physo155460;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_4 . CDS 724718 724821 . - 0 ID=Physo155460;Parent=Physo155460;rank=3 scaffold_4 . exon 724718 724821 . - . ID=Physo155460.3;Parent=Physo155460;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 724888 725030 . - 0 ID=Physo155460;Parent=Physo155460;rank=2 scaffold_4 . exon 724888 725030 . - . ID=Physo155460.2;Parent=Physo155460;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 725109 725530 . - 0 ID=Physo155460;Parent=Physo155460;rank=1 scaffold_4 . exon 725109 725530 . - . ID=Physo155460.1;Parent=Physo155460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . repeat_region 727276 727316 . ? . description=trf scaffold_4 . repeat_region 733047 733062 . ? . description=dust scaffold_4 . repeat_region 734272 734280 . ? . description=dust scaffold_4 . exon 727220 727290 . + . ID=Physo128322.2;Parent=Physo128322;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . exon 727585 727624 . + . ID=Physo128322.3;Parent=Physo128322;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . exon 727882 728036 . + . ID=Physo128322.4;Parent=Physo128322;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . exon 728085 728600 . + . ID=Physo128322.5;Parent=Physo128322;constitutive=1;rank=5 scaffold_4 . exon 728695 728838 . + . ID=Physo128322.6;Parent=Physo128322;constitutive=1;rank=6 scaffold_4 . exon 728925 729168 . + . ID=Physo128322.7;Parent=Physo128322;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_4 . exon 729332 729573 . + . ID=Physo128322.8;Parent=Physo128322;constitutive=1;ensembl_phase=1;rank=8 scaffold_4 . biological_region 741576 741582 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 743985 746367 . + . ID=Physo128323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40167;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 743985 746367 . + . ID=Physo128323;Parent=Physo128323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 743985 744007 . + 0 ID=Physo128323;Parent=Physo128323;rank=1 scaffold_4 . exon 743985 744007 . + . ID=Physo128323.1;Parent=Physo128323;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 744083 744593 . + 0 ID=Physo128323;Parent=Physo128323;rank=2 scaffold_4 . exon 744083 744593 . + . ID=Physo128323.2;Parent=Physo128323;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 744667 746367 . + 0 ID=Physo128323;Parent=Physo128323;rank=3 scaffold_4 . exon 744667 746367 . + . ID=Physo128323.3;Parent=Physo128323;constitutive=1;rank=3 scaffold_4 . repeat_region 747479 747546 . ? . description=trf scaffold_4 . repeat_region 747914 748167 . ? . description=trf scaffold_4 ensembl protein_coding_gene 751125 752306 . - . ID=Physo110975;biotype=protein_coding;external_name=estExt_Genewise1.C_40137;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 751125 752306 . - . ID=Physo110975;Parent=Physo110975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 751125 752135 . - 0 ID=Physo110975;Parent=Physo110975;rank=1 scaffold_4 . exon 751125 752161 . - . ID=Physo110975.2;Parent=Physo110975;constitutive=1;ensembl_phase=-1;rank=2 scaffold_4 . exon 752237 752306 . - . ID=Physo110975.1;Parent=Physo110975;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 752799 754035 . + . ID=Physo128325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40169;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 752799 754035 . + . ID=Physo128325;Parent=Physo128325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 752799 752842 . + 0 ID=Physo128325;Parent=Physo128325;rank=1 scaffold_4 . exon 752799 752842 . + . ID=Physo128325.1;Parent=Physo128325;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 753093 754035 . + 0 ID=Physo128325;Parent=Physo128325;rank=2 scaffold_4 . exon 753093 754035 . + . ID=Physo128325.2;Parent=Physo128325;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 756056 757789 . - . ID=Physo128326;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40170;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 756056 757789 . - . ID=Physo128326;Parent=Physo128326;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 756056 757789 . - 0 ID=Physo128326;Parent=Physo128326;rank=1 scaffold_4 . exon 756056 757789 . - . ID=Physo128326.1;Parent=Physo128326;constitutive=1;rank=1 scaffold_4 . biological_region 757588 757594 0.999 + . logic_name=eponine scaffold_4 . biological_region 757598 757602 0.999 - . logic_name=eponine scaffold_4 . biological_region 757954 757954 0.999 - . logic_name=eponine scaffold_4 . biological_region 758370 758370 0.999 - . logic_name=eponine scaffold_4 . biological_region 758763 758767 0.999 + . logic_name=eponine scaffold_4 . biological_region 758878 758885 0.999 + . logic_name=eponine scaffold_4 . biological_region 760036 760038 0.999 - . logic_name=eponine scaffold_4 . biological_region 762287 762291 0.999 - . logic_name=eponine scaffold_4 . biological_region 764993 764996 0.999 + . logic_name=eponine scaffold_4 . biological_region 765068 765071 0.999 + . logic_name=eponine scaffold_4 . repeat_region 765224 765251 . ? . description=dust scaffold_4 . biological_region 765248 765249 0.999 - . logic_name=eponine scaffold_4 . repeat_region 765612 765619 . ? . description=dust scaffold_4 . biological_region 765666 765668 0.999 - . logic_name=eponine scaffold_4 . biological_region 766183 766185 0.999 + . logic_name=eponine scaffold_4 . biological_region 766349 766349 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 759074 760066 . + . ID=Physo108264;biotype=protein_coding;description=cAMP-dependent protein kinase catalytic subunit 1 [Source:UniProtKB/TrEMBL%3BAcc:B8XSN9];external_name=estExt_fgenesh1_pm.C_40015;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 759074 760066 . + . ID=Physo108264;Parent=Physo108264;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 759074 759130 . + 0 ID=Physo108264;Parent=Physo108264;rank=1 scaffold_4 . exon 759074 759130 . + . ID=Physo108264.1;Parent=Physo108264;constitutive=1;rank=1 scaffold_4 . CDS 759200 760066 . + 0 ID=Physo108264;Parent=Physo108264;rank=2 scaffold_4 . exon 759200 760066 . + . ID=Physo108264.2;Parent=Physo108264;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 760537 761384 . - . ID=Physo128328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40172;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 760537 761384 . - . ID=Physo128328;Parent=Physo128328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 760537 761328 . - 0 ID=Physo128328;Parent=Physo128328;rank=1 scaffold_4 . exon 760537 761384 . - . ID=Physo128328.1;Parent=Physo128328;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 762006 763704 . + . ID=Physo128329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40173;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 762006 763704 . + . ID=Physo128329;Parent=Physo128329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 762006 762476 . + 0 ID=Physo128329;Parent=Physo128329;rank=1 scaffold_4 . exon 762006 762476 . + . ID=Physo128329.1;Parent=Physo128329;constitutive=1;rank=1 scaffold_4 . CDS 762549 762585 . + 0 ID=Physo128329;Parent=Physo128329;rank=2 scaffold_4 . exon 762549 762585 . + . ID=Physo128329.2;Parent=Physo128329;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 762665 762756 . + 0 ID=Physo128329;Parent=Physo128329;rank=3 scaffold_4 . exon 762665 762756 . + . ID=Physo128329.3;Parent=Physo128329;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 762823 763068 . + 0 ID=Physo128329;Parent=Physo128329;rank=4 scaffold_4 . exon 762823 763068 . + . ID=Physo128329.4;Parent=Physo128329;constitutive=1;rank=4 scaffold_4 . CDS 763158 763260 . + 0 ID=Physo128329;Parent=Physo128329;rank=5 scaffold_4 . exon 763158 763260 . + . ID=Physo128329.5;Parent=Physo128329;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_4 . CDS 763345 763442 . + 0 ID=Physo128329;Parent=Physo128329;rank=6 scaffold_4 . exon 763345 763442 . + . ID=Physo128329.6;Parent=Physo128329;constitutive=1;ensembl_phase=1;rank=6 scaffold_4 . CDS 763516 763704 . + 0 ID=Physo128329;Parent=Physo128329;rank=7 scaffold_4 . exon 763516 763704 . + . ID=Physo128329.7;Parent=Physo128329;constitutive=1;rank=7 scaffold_4 ensembl protein_coding_gene 763825 765358 . - . ID=Physo128330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40174;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 763825 765358 . - . ID=Physo128330;Parent=Physo128330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 763825 765219 . - 0 ID=Physo128330;Parent=Physo128330;rank=1 scaffold_4 . exon 763825 765358 . - . ID=Physo128330.1;Parent=Physo128330;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 766457 767183 . + . ID=Physo128331;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40175;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 766457 767183 . + . ID=Physo128331;Parent=Physo128331;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 766457 766857 . + . ID=Physo128331.1;Parent=Physo128331;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 766465 766857 . + 0 ID=Physo128331;Parent=Physo128331;rank=1 scaffold_4 . CDS 766930 767181 . + 0 ID=Physo128331;Parent=Physo128331;rank=2 scaffold_4 . repeat_region 769582 769609 . ? . description=trf scaffold_4 . repeat_region 771512 771551 . ? . description=trf scaffold_4 ensembl protein_coding_gene 775704 779473 . - . ID=Physo108266;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40017;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 775704 779473 . - . ID=Physo108266;Parent=Physo108266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 775704 778026 . - . ID=Physo108266.3;Parent=Physo108266;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_4 . CDS 775768 778026 . - 0 ID=Physo108266;Parent=Physo108266;rank=3 scaffold_4 . CDS 778093 779197 . - 0 ID=Physo108266;Parent=Physo108266;rank=2 scaffold_4 . CDS 779295 779404 . - 0 ID=Physo108266;Parent=Physo108266;rank=1 scaffold_4 ensembl protein_coding_gene 768170 768992 . - . ID=Physo110985;biotype=protein_coding;external_name=estExt_Genewise1.C_40147;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 768170 768992 . - . ID=Physo110985;Parent=Physo110985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 768170 768992 . - . ID=Physo110985.1;Parent=Physo110985;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_4 . CDS 768207 768992 . - 0 ID=Physo110985;Parent=Physo110985;rank=1 scaffold_4 . exon 766930 767183 . + . ID=Physo128331.2;Parent=Physo128331;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_4 ensembl protein_coding_gene 769220 771510 . + . ID=Physo128333;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40177;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 769220 771510 . + . ID=Physo128333;Parent=Physo128333;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 769220 769530 . + . ID=Physo128333.1;Parent=Physo128333;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 769260 769530 . + 0 ID=Physo128333;Parent=Physo128333;rank=1 scaffold_4 . CDS 769623 770609 . + 0 ID=Physo128333;Parent=Physo128333;rank=2 scaffold_4 . exon 769623 770609 . + . ID=Physo128333.2;Parent=Physo128333;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 770685 770868 . + 0 ID=Physo128333;Parent=Physo128333;rank=3 scaffold_4 . exon 770685 770868 . + . ID=Physo128333.3;Parent=Physo128333;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_4 . CDS 770944 771221 . + 0 ID=Physo128333;Parent=Physo128333;rank=4 scaffold_4 . exon 770944 771221 . + . ID=Physo128333.4;Parent=Physo128333;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 771287 771510 . + 0 ID=Physo128333;Parent=Physo128333;rank=5 scaffold_4 . exon 771287 771510 . + . ID=Physo128333.5;Parent=Physo128333;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 ensembl protein_coding_gene 772171 775560 . - . ID=Physo128334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40178;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 772171 775560 . - . ID=Physo128334;Parent=Physo128334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 772171 775560 . - 0 ID=Physo128334;Parent=Physo128334;rank=1 scaffold_4 . exon 772171 775560 . - . ID=Physo128334.1;Parent=Physo128334;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 771746 772077 . + . ID=Physo155463;biotype=protein_coding;external_name=C_scaffold_4000031;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 771746 772077 . + . ID=Physo155463;Parent=Physo155463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 771746 771892 . + 0 ID=Physo155463;Parent=Physo155463;rank=1 scaffold_4 . exon 771746 771892 . + . ID=Physo155463.1;Parent=Physo155463;constitutive=1;rank=1 scaffold_4 . CDS 771961 772077 . + 0 ID=Physo155463;Parent=Physo155463;rank=2 scaffold_4 . exon 771961 772077 . + . ID=Physo155463.2;Parent=Physo155463;constitutive=1;rank=2 scaffold_4 . biological_region 778934 778936 0.999 - . logic_name=eponine scaffold_4 . biological_region 778973 778975 0.999 - . logic_name=eponine scaffold_4 . biological_region 782632 782632 0.999 - . logic_name=eponine scaffold_4 . repeat_region 782892 782899 . ? . description=dust scaffold_4 . repeat_region 783547 783556 . ? . description=dust scaffold_4 . exon 778093 779197 . - . ID=Physo108266.2;Parent=Physo108266;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . exon 779295 779473 . - . ID=Physo108266.1;Parent=Physo108266;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 . repeat_region 789488 789544 . ? . description=trf scaffold_4 . repeat_region 789488 789564 . ? . description=trf scaffold_4 . repeat_region 793998 794040 . ? . description=trf scaffold_4 . repeat_region 794500 794519 . ? . description=trf scaffold_4 . repeat_region 794549 794571 . ? . description=trf scaffold_4 ensembl protein_coding_gene 790180 792150 . + . ID=Physo128336;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40180;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 790180 792150 . + . ID=Physo128336;Parent=Physo128336;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 790180 792150 . + . ID=Physo128336.1;Parent=Physo128336;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 790390 792150 . + 0 ID=Physo128336;Parent=Physo128336;rank=1 scaffold_4 ensembl protein_coding_gene 792364 794250 . - . ID=Physo128337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40181;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 792364 794250 . - . ID=Physo128337;Parent=Physo128337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 792364 794250 . - 0 ID=Physo128337;Parent=Physo128337;rank=1 scaffold_4 . exon 792364 794250 . - . ID=Physo128337.1;Parent=Physo128337;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 794487 794822 . + . ID=Physo155469;biotype=protein_coding;external_name=C_scaffold_4000037;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 794487 794822 . + . ID=Physo155469;Parent=Physo155469;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 794487 794822 . + 0 ID=Physo155469;Parent=Physo155469;rank=1 scaffold_4 . exon 794487 794822 . + . ID=Physo155469.1;Parent=Physo155469;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 795111 797338 . - . ID=Physo155470;biotype=protein_coding;external_name=C_scaffold_4000038;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 795111 797338 . - . ID=Physo155470;Parent=Physo155470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 795111 795436 . - 0 ID=Physo155470;Parent=Physo155470;rank=5 scaffold_4 . exon 795111 795436 . - . ID=Physo155470.5;Parent=Physo155470;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 795527 795957 . - 0 ID=Physo155470;Parent=Physo155470;rank=4 scaffold_4 . exon 795527 795957 . - . ID=Physo155470.4;Parent=Physo155470;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 796000 796364 . - 0 ID=Physo155470;Parent=Physo155470;rank=3 scaffold_4 . exon 796000 796364 . - . ID=Physo155470.3;Parent=Physo155470;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 796542 796640 . - 0 ID=Physo155470;Parent=Physo155470;rank=2 scaffold_4 . CDS 796721 797338 . - 0 ID=Physo155470;Parent=Physo155470;rank=1 scaffold_4 . repeat_region 796673 796716 . ? . description=dust scaffold_4 . biological_region 797164 797168 0.999 + . logic_name=eponine scaffold_4 . biological_region 797203 797205 0.999 + . logic_name=eponine scaffold_4 . biological_region 797240 797252 0.999 + . logic_name=eponine scaffold_4 . repeat_region 797557 797564 . ? . description=dust scaffold_4 . repeat_region 803267 803274 . ? . description=dust scaffold_4 . repeat_region 803332 803341 . ? . description=dust scaffold_4 . biological_region 805677 805682 0.999 - . logic_name=eponine scaffold_4 . biological_region 805942 805942 0.999 + . logic_name=eponine scaffold_4 . biological_region 805953 805954 0.999 + . logic_name=eponine scaffold_4 . biological_region 806038 806042 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 799030 800763 . + . ID=Physo128340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40184;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 799030 800763 . + . ID=Physo128340;Parent=Physo128340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 799030 799865 . + 0 ID=Physo128340;Parent=Physo128340;rank=1 scaffold_4 . exon 799030 799865 . + . ID=Physo128340.1;Parent=Physo128340;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 800072 800428 . + 0 ID=Physo128340;Parent=Physo128340;rank=2 scaffold_4 . exon 800072 800428 . + . ID=Physo128340.2;Parent=Physo128340;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 800457 800724 . + 0 ID=Physo128340;Parent=Physo128340;rank=3 scaffold_4 . exon 800457 800724 . + . ID=Physo128340.3;Parent=Physo128340;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 800755 800763 . + 0 ID=Physo128340;Parent=Physo128340;rank=4 scaffold_4 . exon 800755 800763 . + . ID=Physo128340.4;Parent=Physo128340;constitutive=1;rank=4 scaffold_4 . exon 796542 796640 . - . ID=Physo155470.2;Parent=Physo155470;constitutive=1;rank=2 scaffold_4 . exon 796721 797338 . - . ID=Physo155470.1;Parent=Physo155470;constitutive=1;rank=1 scaffold_4 . repeat_region 806314 806523 . ? . description=trf scaffold_4 . repeat_region 812289 812314 . ? . description=trf scaffold_4 ensembl protein_coding_gene 810253 811957 . + . ID=Physo128341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40185;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 810253 811957 . + . ID=Physo128341;Parent=Physo128341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 810253 811953 . + 0 ID=Physo128341;Parent=Physo128341;rank=1 scaffold_4 . exon 810253 811957 . + . ID=Physo128341.1;Parent=Physo128341;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 812696 814038 . + . ID=Physo128342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40186;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 812696 814038 . + . ID=Physo128342;Parent=Physo128342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 812696 813640 . + 0 ID=Physo128342;Parent=Physo128342;rank=1 scaffold_4 . exon 812696 813640 . + . ID=Physo128342.1;Parent=Physo128342;constitutive=1;rank=1 scaffold_4 . CDS 813718 814038 . + 0 ID=Physo128342;Parent=Physo128342;rank=2 scaffold_4 . exon 813718 814038 . + . ID=Physo128342.2;Parent=Physo128342;constitutive=1;rank=2 scaffold_4 . biological_region 818853 818860 0.999 + . logic_name=eponine scaffold_4 . biological_region 821526 821527 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 816337 817923 . + . ID=Physo128343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40187;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 816337 817923 . + . ID=Physo128343;Parent=Physo128343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 816337 817923 . + 0 ID=Physo128343;Parent=Physo128343;rank=1 scaffold_4 . exon 816337 817923 . + . ID=Physo128343.1;Parent=Physo128343;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 817974 820782 . - . ID=Physo128344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40188;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 817974 820782 . - . ID=Physo128344;Parent=Physo128344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 817974 818670 . - . ID=Physo128344.4;Parent=Physo128344;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_4 . CDS 818060 818670 . - 0 ID=Physo128344;Parent=Physo128344;rank=4 scaffold_4 . CDS 819124 819670 . - 0 ID=Physo128344;Parent=Physo128344;rank=3 scaffold_4 . exon 819124 819670 . - . ID=Physo128344.3;Parent=Physo128344;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . CDS 819749 819874 . - 0 ID=Physo128344;Parent=Physo128344;rank=2 scaffold_4 . exon 819749 819874 . - . ID=Physo128344.2;Parent=Physo128344;constitutive=1;rank=2 scaffold_4 . CDS 819964 820782 . - 0 ID=Physo128344;Parent=Physo128344;rank=1 scaffold_4 . exon 819964 820782 . - . ID=Physo128344.1;Parent=Physo128344;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 821526 825096 . + . ID=Physo155473;biotype=protein_coding;external_name=C_scaffold_4000041;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 821526 825096 . + . ID=Physo155473;Parent=Physo155473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 821526 821659 . + 0 ID=Physo155473;Parent=Physo155473;rank=1 scaffold_4 . exon 821526 821659 . + . ID=Physo155473.1;Parent=Physo155473;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 821819 821923 . + 0 ID=Physo155473;Parent=Physo155473;rank=2 scaffold_4 . exon 821819 821923 . + . ID=Physo155473.2;Parent=Physo155473;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 821994 822267 . + 0 ID=Physo155473;Parent=Physo155473;rank=3 scaffold_4 . exon 821994 822267 . + . ID=Physo155473.3;Parent=Physo155473;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 822354 822451 . + 0 ID=Physo155473;Parent=Physo155473;rank=4 scaffold_4 . exon 822354 822451 . + . ID=Physo155473.4;Parent=Physo155473;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_4 . CDS 822525 822673 . + 0 ID=Physo155473;Parent=Physo155473;rank=5 scaffold_4 . exon 822525 822673 . + . ID=Physo155473.5;Parent=Physo155473;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_4 . CDS 822939 823000 . + 0 ID=Physo155473;Parent=Physo155473;rank=6 scaffold_4 . exon 822939 823000 . + . ID=Physo155473.6;Parent=Physo155473;constitutive=1;ensembl_phase=1;rank=6 scaffold_4 . CDS 823044 823109 . + 0 ID=Physo155473;Parent=Physo155473;rank=7 scaffold_4 . exon 823044 823109 . + . ID=Physo155473.7;Parent=Physo155473;constitutive=1;rank=7 scaffold_4 . CDS 823243 823377 . + 0 ID=Physo155473;Parent=Physo155473;rank=8 scaffold_4 . exon 823243 823377 . + . ID=Physo155473.8;Parent=Physo155473;constitutive=1;rank=8 scaffold_4 . CDS 823618 823786 . + 0 ID=Physo155473;Parent=Physo155473;rank=9 scaffold_4 . exon 823618 823786 . + . ID=Physo155473.9;Parent=Physo155473;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_4 . CDS 823838 823955 . + 0 ID=Physo155473;Parent=Physo155473;rank=10 scaffold_4 . exon 823838 823955 . + . ID=Physo155473.10;Parent=Physo155473;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_4 . CDS 824067 824335 . + 0 ID=Physo155473;Parent=Physo155473;rank=11 scaffold_4 . exon 824067 824335 . + . ID=Physo155473.11;Parent=Physo155473;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_4 . CDS 824366 824514 . + 0 ID=Physo155473;Parent=Physo155473;rank=12 scaffold_4 . exon 824366 824514 . + . ID=Physo155473.12;Parent=Physo155473;constitutive=1;ensembl_phase=1;rank=12 scaffold_4 . CDS 824560 825096 . + 0 ID=Physo155473;Parent=Physo155473;rank=13 scaffold_4 . exon 824560 825096 . + . ID=Physo155473.13;Parent=Physo155473;constitutive=1;rank=13 scaffold_4 . repeat_region 826379 826666 . + . description=Polinton-1_PI scaffold_4 . repeat_region 826839 826868 . + . description=Polinton-1_PI scaffold_4 . repeat_region 831533 831556 . ? . description=trf scaffold_4 ensembl protein_coding_gene 826487 827962 . + . ID=Physo128346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40190;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 826487 827962 . + . ID=Physo128346;Parent=Physo128346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 826487 826663 . + . ID=Physo128346.1;Parent=Physo128346;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 826502 826663 . + 0 ID=Physo128346;Parent=Physo128346;rank=1 scaffold_4 . CDS 826841 827066 . + 0 ID=Physo128346;Parent=Physo128346;rank=2 scaffold_4 . exon 826841 827066 . + . ID=Physo128346.2;Parent=Physo128346;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 827125 827606 . + 0 ID=Physo128346;Parent=Physo128346;rank=3 scaffold_4 . exon 827125 827606 . + . ID=Physo128346.3;Parent=Physo128346;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 827669 827884 . + 0 ID=Physo128346;Parent=Physo128346;rank=4 scaffold_4 . exon 827669 827962 . + . ID=Physo128346.4;Parent=Physo128346;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_4 ensembl protein_coding_gene 828444 832023 . + . ID=Physo128347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40191;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 828444 832023 . + . ID=Physo128347;Parent=Physo128347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 828444 829922 . + 0 ID=Physo128347;Parent=Physo128347;rank=1 scaffold_4 . exon 828444 829922 . + . ID=Physo128347.1;Parent=Physo128347;constitutive=1;rank=1 scaffold_4 . CDS 830115 831017 . + 0 ID=Physo128347;Parent=Physo128347;rank=2 scaffold_4 . exon 830115 831017 . + . ID=Physo128347.2;Parent=Physo128347;constitutive=1;rank=2 scaffold_4 . CDS 831044 831823 . + 0 ID=Physo128347;Parent=Physo128347;rank=3 scaffold_4 . exon 831044 831823 . + . ID=Physo128347.3;Parent=Physo128347;constitutive=1;rank=3 scaffold_4 . CDS 831883 832023 . + 0 ID=Physo128347;Parent=Physo128347;rank=4 scaffold_4 . exon 831883 832023 . + . ID=Physo128347.4;Parent=Physo128347;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 832226 833450 . - . ID=Physo128348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40192;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 832226 833450 . - . ID=Physo128348;Parent=Physo128348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 832226 832805 . - 0 ID=Physo128348;Parent=Physo128348;rank=4 scaffold_4 . exon 832226 832805 . - . ID=Physo128348.4;Parent=Physo128348;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 832902 833098 . - 0 ID=Physo128348;Parent=Physo128348;rank=3 scaffold_4 . exon 832902 833098 . - . ID=Physo128348.3;Parent=Physo128348;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 833175 833348 . - 0 ID=Physo128348;Parent=Physo128348;rank=2 scaffold_4 . exon 833175 833348 . - . ID=Physo128348.2;Parent=Physo128348;constitutive=1;rank=2 scaffold_4 . CDS 833385 833450 . - 0 ID=Physo128348;Parent=Physo128348;rank=1 scaffold_4 . exon 833385 833450 . - . ID=Physo128348.1;Parent=Physo128348;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 834161 838219 . + . ID=Physo128349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40193;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 834161 838219 . + . ID=Physo128349;Parent=Physo128349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 834161 834163 . + 0 ID=Physo128349;Parent=Physo128349;rank=1 scaffold_4 . exon 834161 834163 . + . ID=Physo128349.1;Parent=Physo128349;constitutive=1;rank=1 scaffold_4 . CDS 834639 834931 . + 0 ID=Physo128349;Parent=Physo128349;rank=2 scaffold_4 . exon 834639 834931 . + . ID=Physo128349.2;Parent=Physo128349;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 835064 835401 . + 0 ID=Physo128349;Parent=Physo128349;rank=3 scaffold_4 . exon 835064 835401 . + . ID=Physo128349.3;Parent=Physo128349;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 835611 835652 . + 0 ID=Physo128349;Parent=Physo128349;rank=4 scaffold_4 . exon 835611 835652 . + . ID=Physo128349.4;Parent=Physo128349;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 835767 835838 . + 0 ID=Physo128349;Parent=Physo128349;rank=5 scaffold_4 . exon 835767 835838 . + . ID=Physo128349.5;Parent=Physo128349;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 835890 836108 . + 0 ID=Physo128349;Parent=Physo128349;rank=6 scaffold_4 . exon 835890 836108 . + . ID=Physo128349.6;Parent=Physo128349;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_4 . CDS 836409 836564 . + 0 ID=Physo128349;Parent=Physo128349;rank=7 scaffold_4 . CDS 836628 837327 . + 0 ID=Physo128349;Parent=Physo128349;rank=8 scaffold_4 . CDS 837619 838219 . + 0 ID=Physo128349;Parent=Physo128349;rank=9 scaffold_4 . exon 836409 836564 . + . ID=Physo128349.7;Parent=Physo128349;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_4 . exon 836628 837327 . + . ID=Physo128349.8;Parent=Physo128349;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_4 . exon 837619 838219 . + . ID=Physo128349.9;Parent=Physo128349;constitutive=1;ensembl_phase=2;rank=9 scaffold_4 ensembl protein_coding_gene 844323 845677 . + . ID=Physo128350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40194;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 844323 845677 . + . ID=Physo128350;Parent=Physo128350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 844323 844930 . + 0 ID=Physo128350;Parent=Physo128350;rank=1 scaffold_4 . exon 844323 844930 . + . ID=Physo128350.1;Parent=Physo128350;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 844958 845168 . + 0 ID=Physo128350;Parent=Physo128350;rank=2 scaffold_4 . exon 844958 845168 . + . ID=Physo128350.2;Parent=Physo128350;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 845243 845677 . + 0 ID=Physo128350;Parent=Physo128350;rank=3 scaffold_4 . exon 845243 845677 . + . ID=Physo128350.3;Parent=Physo128350;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 845805 846607 . - . ID=Physo128351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40195;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 845805 846607 . - . ID=Physo128351;Parent=Physo128351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 845805 846030 . - . ID=Physo128351.2;Parent=Physo128351;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_4 . CDS 845956 846030 . - 0 ID=Physo128351;Parent=Physo128351;rank=2 scaffold_4 . CDS 846116 846607 . - 0 ID=Physo128351;Parent=Physo128351;rank=1 scaffold_4 . exon 846116 846607 . - . ID=Physo128351.1;Parent=Physo128351;constitutive=1;rank=1 scaffold_4 . repeat_region 847802 847809 . ? . description=dust scaffold_4 . biological_region 849423 849430 0.999 + . logic_name=eponine scaffold_4 . biological_region 849463 849466 0.999 + . logic_name=eponine scaffold_4 . biological_region 849464 849470 0.999 - . logic_name=eponine scaffold_4 . biological_region 849480 849484 0.999 + . logic_name=eponine scaffold_4 . biological_region 849542 849544 0.999 - . logic_name=eponine scaffold_4 . biological_region 850618 850620 0.999 - . logic_name=eponine scaffold_4 . biological_region 850651 850653 0.999 + . logic_name=eponine scaffold_4 . biological_region 850760 850767 0.999 - . logic_name=eponine scaffold_4 . biological_region 850977 850977 0.999 + . logic_name=eponine scaffold_4 . biological_region 852937 852940 0.999 + . logic_name=eponine scaffold_4 . biological_region 853003 853007 0.999 - . logic_name=eponine scaffold_4 . repeat_region 855679 855686 . ? . description=dust scaffold_4 ensembl protein_coding_gene 847892 851390 . - . ID=Physo128352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40196;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 847892 851390 . - . ID=Physo128352;Parent=Physo128352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 847892 847970 . - . ID=Physo128352.6;Parent=Physo128352;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_4 . CDS 847948 847970 . - 0 ID=Physo128352;Parent=Physo128352;rank=6 scaffold_4 . CDS 848042 848465 . - 0 ID=Physo128352;Parent=Physo128352;rank=5 scaffold_4 . exon 848042 848465 . - . ID=Physo128352.5;Parent=Physo128352;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_4 . CDS 848528 849547 . - 0 ID=Physo128352;Parent=Physo128352;rank=4 scaffold_4 . exon 848528 849547 . - . ID=Physo128352.4;Parent=Physo128352;constitutive=1;rank=4 scaffold_4 . CDS 849740 849748 . - 0 ID=Physo128352;Parent=Physo128352;rank=3 scaffold_4 . exon 849740 849748 . - . ID=Physo128352.3;Parent=Physo128352;constitutive=1;rank=3 scaffold_4 . CDS 849783 850262 . - 0 ID=Physo128352;Parent=Physo128352;rank=2 scaffold_4 . exon 849783 850262 . - . ID=Physo128352.2;Parent=Physo128352;constitutive=1;rank=2 scaffold_4 . CDS 850329 851390 . - 0 ID=Physo128352;Parent=Physo128352;rank=1 scaffold_4 . exon 850329 851390 . - . ID=Physo128352.1;Parent=Physo128352;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 852800 853748 . - . ID=Physo128353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40197;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 852800 853748 . - . ID=Physo128353;Parent=Physo128353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 852800 852822 . - . ID=Physo128353.2;Parent=Physo128353;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_4 . CDS 852801 852822 . - 0 ID=Physo128353;Parent=Physo128353;rank=2 scaffold_4 . CDS 853096 853748 . - 0 ID=Physo128353;Parent=Physo128353;rank=1 scaffold_4 . exon 853096 853748 . - . ID=Physo128353.1;Parent=Physo128353;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 854175 855509 . - . ID=Physo128354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40198;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 854175 855509 . - . ID=Physo128354;Parent=Physo128354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 854175 855509 . - . ID=Physo128354.1;Parent=Physo128354;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 854820 855398 . - 0 ID=Physo128354;Parent=Physo128354;rank=1 scaffold_4 ensembl protein_coding_gene 856435 857871 . - . ID=Physo128355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40199;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 856435 857871 . - . ID=Physo128355;Parent=Physo128355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 856435 856456 . - 0 ID=Physo128355;Parent=Physo128355;rank=2 scaffold_4 . exon 856435 856456 . - . ID=Physo128355.2;Parent=Physo128355;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 856517 857871 . - 0 ID=Physo128355;Parent=Physo128355;rank=1 scaffold_4 . exon 856517 857871 . - . ID=Physo128355.1;Parent=Physo128355;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . biological_region 866948 866952 0.999 - . logic_name=eponine scaffold_4 . biological_region 868834 868837 0.999 + . logic_name=eponine scaffold_4 . repeat_region 869723 869731 . ? . description=dust scaffold_4 . repeat_region 871554 871562 . ? . description=dust scaffold_4 . repeat_region 871612 871689 . ? . description=trf scaffold_4 . repeat_region 872848 872855 . ? . description=dust scaffold_4 . repeat_region 874424 874483 . ? . description=trf scaffold_4 . biological_region 875512 875514 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 875374 876904 . + . ID=Physo128356;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40200;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 875374 876904 . + . ID=Physo128356;Parent=Physo128356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 875374 876195 . + 0 ID=Physo128356;Parent=Physo128356;rank=1 scaffold_4 . exon 875374 876195 . + . ID=Physo128356.1;Parent=Physo128356;constitutive=1;rank=1 scaffold_4 . CDS 876224 876904 . + 0 ID=Physo128356;Parent=Physo128356;rank=2 scaffold_4 . repeat_region 883822 883897 . + . description=(CTG)n scaffold_4 . exon 876224 876904 . + . ID=Physo128356.2;Parent=Physo128356;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 877294 878435 . + . ID=Physo128357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40201;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 877294 878435 . + . ID=Physo128357;Parent=Physo128357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 877294 877404 . + 0 ID=Physo128357;Parent=Physo128357;rank=1 scaffold_4 . exon 877294 877404 . + . ID=Physo128357.1;Parent=Physo128357;constitutive=1;rank=1 scaffold_4 . CDS 877468 877503 . + 0 ID=Physo128357;Parent=Physo128357;rank=2 scaffold_4 . exon 877468 877503 . + . ID=Physo128357.2;Parent=Physo128357;constitutive=1;rank=2 scaffold_4 . CDS 877581 877724 . + 0 ID=Physo128357;Parent=Physo128357;rank=3 scaffold_4 . exon 877581 877724 . + . ID=Physo128357.3;Parent=Physo128357;constitutive=1;rank=3 scaffold_4 . CDS 877803 878435 . + 0 ID=Physo128357;Parent=Physo128357;rank=4 scaffold_4 . exon 877803 878435 . + . ID=Physo128357.4;Parent=Physo128357;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 879245 880642 . + . ID=Physo128358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40202;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 879245 880642 . + . ID=Physo128358;Parent=Physo128358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 879245 880642 . + 0 ID=Physo128358;Parent=Physo128358;rank=1 scaffold_4 . exon 879245 880642 . + . ID=Physo128358.1;Parent=Physo128358;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 880857 882308 . + . ID=Physo128359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40203;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 880857 882308 . + . ID=Physo128359;Parent=Physo128359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 880857 881402 . + 0 ID=Physo128359;Parent=Physo128359;rank=1 scaffold_4 . exon 880857 881402 . + . ID=Physo128359.1;Parent=Physo128359;constitutive=1;rank=1 scaffold_4 . CDS 881826 882308 . + 0 ID=Physo128359;Parent=Physo128359;rank=2 scaffold_4 . exon 881826 882308 . + . ID=Physo128359.2;Parent=Physo128359;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 882564 883329 . - . ID=Physo128360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40204;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 882564 883329 . - . ID=Physo128360;Parent=Physo128360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 882564 883310 . - 0 ID=Physo128360;Parent=Physo128360;rank=1 scaffold_4 . exon 882564 883329 . - . ID=Physo128360.1;Parent=Physo128360;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 883453 885417 . - . ID=Physo128361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40205;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 883453 885417 . - . ID=Physo128361;Parent=Physo128361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 883453 885417 . - 0 ID=Physo128361;Parent=Physo128361;rank=1 scaffold_4 . exon 883453 885417 . - . ID=Physo128361.1;Parent=Physo128361;constitutive=1;rank=1 scaffold_4 . repeat_region 889260 889267 . ? . description=dust scaffold_4 . repeat_region 891577 891584 . ? . description=dust scaffold_4 . repeat_region 894737 894756 . ? . description=trf scaffold_4 . repeat_region 895153 895161 . ? . description=dust scaffold_4 . biological_region 895307 895308 0.999 + . logic_name=eponine scaffold_4 . biological_region 895368 895371 0.999 + . logic_name=eponine scaffold_4 . biological_region 895517 895519 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 887105 888442 . + . ID=Physo128362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40206;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 887105 888442 . + . ID=Physo128362;Parent=Physo128362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 887105 888442 . + 0 ID=Physo128362;Parent=Physo128362;rank=1 scaffold_4 . exon 887105 888442 . + . ID=Physo128362.1;Parent=Physo128362;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 889494 891518 . + . ID=Physo128363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40207;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 889494 891518 . + . ID=Physo128363;Parent=Physo128363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 889494 889901 . + . ID=Physo128363.1;Parent=Physo128363;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 . CDS 889522 889901 . + 0 ID=Physo128363;Parent=Physo128363;rank=1 scaffold_4 . CDS 889954 890587 . + 0 ID=Physo128363;Parent=Physo128363;rank=2 scaffold_4 . exon 889954 890587 . + . ID=Physo128363.2;Parent=Physo128363;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 890636 891041 . + 0 ID=Physo128363;Parent=Physo128363;rank=3 scaffold_4 . exon 890636 891041 . + . ID=Physo128363.3;Parent=Physo128363;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . CDS 891140 891412 . + 0 ID=Physo128363;Parent=Physo128363;rank=4 scaffold_4 . exon 891140 891412 . + . ID=Physo128363.4;Parent=Physo128363;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 891484 891518 . + 0 ID=Physo128363;Parent=Physo128363;rank=5 scaffold_4 . exon 891484 891518 . + . ID=Physo128363.5;Parent=Physo128363;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 ensembl protein_coding_gene 893384 894933 . + . ID=Physo128364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40208;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 893384 894933 . + . ID=Physo128364;Parent=Physo128364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 893384 893510 . + 0 ID=Physo128364;Parent=Physo128364;rank=1 scaffold_4 . exon 893384 893510 . + . ID=Physo128364.1;Parent=Physo128364;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 893649 893696 . + 0 ID=Physo128364;Parent=Physo128364;rank=2 scaffold_4 . exon 893649 893696 . + . ID=Physo128364.2;Parent=Physo128364;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 893840 894933 . + 0 ID=Physo128364;Parent=Physo128364;rank=3 scaffold_4 . exon 893840 894933 . + . ID=Physo128364.3;Parent=Physo128364;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 ensembl protein_coding_gene 895342 898135 . + . ID=Physo128365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40209;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 895342 898135 . + . ID=Physo128365;Parent=Physo128365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 895342 895480 . + 0 ID=Physo128365;Parent=Physo128365;rank=1 scaffold_4 . exon 895342 895480 . + . ID=Physo128365.1;Parent=Physo128365;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 895560 898135 . + 0 ID=Physo128365;Parent=Physo128365;rank=2 scaffold_4 . exon 895560 898135 . + . ID=Physo128365.2;Parent=Physo128365;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 ensembl protein_coding_gene 900167 901390 . - . ID=Physo128366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40210;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 900167 901390 . - . ID=Physo128366;Parent=Physo128366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 900167 901390 . - 0 ID=Physo128366;Parent=Physo128366;rank=1 scaffold_4 . exon 900167 901390 . - . ID=Physo128366.1;Parent=Physo128366;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 902523 904145 . + . ID=Physo128367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40211;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 902523 904145 . + . ID=Physo128367;Parent=Physo128367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 902523 904145 . + 0 ID=Physo128367;Parent=Physo128367;rank=1 scaffold_4 . exon 902523 904145 . + . ID=Physo128367.1;Parent=Physo128367;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 904281 905265 . - . ID=Physo128368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40212;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 904281 905265 . - . ID=Physo128368;Parent=Physo128368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 904281 904301 . - 0 ID=Physo128368;Parent=Physo128368;rank=2 scaffold_4 . exon 904281 904301 . - . ID=Physo128368.2;Parent=Physo128368;constitutive=1;rank=2 scaffold_4 . CDS 904432 905265 . - 0 ID=Physo128368;Parent=Physo128368;rank=1 scaffold_4 . exon 904432 905265 . - . ID=Physo128368.1;Parent=Physo128368;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 905515 907228 . + . ID=Physo128369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40213;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 905515 907228 . + . ID=Physo128369;Parent=Physo128369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 905515 906352 . + . ID=Physo128369.1;Parent=Physo128369;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 905669 906352 . + 0 ID=Physo128369;Parent=Physo128369;rank=1 scaffold_4 . CDS 906425 906595 . + 0 ID=Physo128369;Parent=Physo128369;rank=2 scaffold_4 . CDS 906680 907228 . + 0 ID=Physo128369;Parent=Physo128369;rank=3 scaffold_4 . repeat_region 908206 908220 . ? . description=dust scaffold_4 . biological_region 909698 909700 0.999 - . logic_name=eponine scaffold_4 . biological_region 910542 910545 0.999 + . logic_name=eponine scaffold_4 . biological_region 910680 910682 0.999 - . logic_name=eponine scaffold_4 . biological_region 912455 912456 0.999 + . logic_name=eponine scaffold_4 . biological_region 912473 912476 0.999 + . logic_name=eponine scaffold_4 . biological_region 912489 912495 0.999 - . logic_name=eponine scaffold_4 . biological_region 912490 912491 0.999 + . logic_name=eponine scaffold_4 . biological_region 912504 912506 0.999 + . logic_name=eponine scaffold_4 . biological_region 912509 912513 0.999 - . logic_name=eponine scaffold_4 . biological_region 912523 912529 0.999 - . logic_name=eponine scaffold_4 . biological_region 912528 912531 0.999 + . logic_name=eponine scaffold_4 . biological_region 912563 912570 0.999 + . logic_name=eponine scaffold_4 . biological_region 912579 912583 0.999 + . logic_name=eponine scaffold_4 . biological_region 912585 912589 0.999 - . logic_name=eponine scaffold_4 . biological_region 912609 912617 0.999 - . logic_name=eponine scaffold_4 . biological_region 913291 913294 0.999 + . logic_name=eponine scaffold_4 . exon 906425 906595 . + . ID=Physo128369.2;Parent=Physo128369;constitutive=1;rank=2 scaffold_4 . exon 906680 907228 . + . ID=Physo128369.3;Parent=Physo128369;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 909093 912704 . - . ID=Physo128370;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40214;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 909093 912704 . - . ID=Physo128370;Parent=Physo128370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 909093 912704 . - 0 ID=Physo128370;Parent=Physo128370;rank=1 scaffold_4 . exon 909093 912704 . - . ID=Physo128370.1;Parent=Physo128370;constitutive=1;rank=1 scaffold_4 . repeat_region 922707 922740 . ? . description=trf scaffold_4 ensembl protein_coding_gene 917012 919171 . - . ID=Physo128371;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40215;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 917012 919171 . - . ID=Physo128371;Parent=Physo128371;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 917012 917028 . - 0 ID=Physo128371;Parent=Physo128371;rank=2 scaffold_4 . exon 917012 917028 . - . ID=Physo128371.2;Parent=Physo128371;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 917194 919171 . - 0 ID=Physo128371;Parent=Physo128371;rank=1 scaffold_4 . exon 917194 919171 . - . ID=Physo128371.1;Parent=Physo128371;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 919597 925116 . - . ID=Physo128372;biotype=protein_coding;description=PsRxL468 [Source:UniProtKB/TrEMBL%3BAcc:E0W4P8];external_name=estExt_fgenesh1_pg.C_40216;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 919597 925116 . - . ID=Physo128372;Parent=Physo128372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 919597 919710 . - 0 ID=Physo128372;Parent=Physo128372;rank=14 scaffold_4 . exon 919597 919710 . - . ID=Physo128372.14;Parent=Physo128372;constitutive=1;rank=14 scaffold_4 . CDS 919780 920079 . - 0 ID=Physo128372;Parent=Physo128372;rank=13 scaffold_4 . exon 919780 920079 . - . ID=Physo128372.13;Parent=Physo128372;constitutive=1;rank=13 scaffold_4 . CDS 920135 920789 . - 0 ID=Physo128372;Parent=Physo128372;rank=12 scaffold_4 . exon 920135 920789 . - . ID=Physo128372.12;Parent=Physo128372;constitutive=1;ensembl_phase=2;rank=12 scaffold_4 . CDS 921002 921586 . - 0 ID=Physo128372;Parent=Physo128372;rank=11 scaffold_4 . exon 921002 921586 . - . ID=Physo128372.11;Parent=Physo128372;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_4 . CDS 921612 921856 . - 0 ID=Physo128372;Parent=Physo128372;rank=10 scaffold_4 . exon 921612 921856 . - . ID=Physo128372.10;Parent=Physo128372;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_4 . CDS 921971 922109 . - 0 ID=Physo128372;Parent=Physo128372;rank=9 scaffold_4 . exon 921971 922109 . - . ID=Physo128372.9;Parent=Physo128372;constitutive=1;ensembl_phase=2;rank=9 scaffold_4 . CDS 922214 922247 . - 0 ID=Physo128372;Parent=Physo128372;rank=8 scaffold_4 . exon 922214 922247 . - . ID=Physo128372.8;Parent=Physo128372;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_4 . CDS 922482 922538 . - 0 ID=Physo128372;Parent=Physo128372;rank=7 scaffold_4 . exon 922482 922538 . - . ID=Physo128372.7;Parent=Physo128372;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_4 . CDS 922601 922679 . - 0 ID=Physo128372;Parent=Physo128372;rank=6 scaffold_4 . exon 922601 922679 . - . ID=Physo128372.6;Parent=Physo128372;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_4 . CDS 922708 922733 . - 0 ID=Physo128372;Parent=Physo128372;rank=5 scaffold_4 . exon 922708 922733 . - . ID=Physo128372.5;Parent=Physo128372;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 922803 923170 . - 0 ID=Physo128372;Parent=Physo128372;rank=4 scaffold_4 . exon 922803 923170 . - . ID=Physo128372.4;Parent=Physo128372;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 923335 923428 . - 0 ID=Physo128372;Parent=Physo128372;rank=3 scaffold_4 . exon 923335 923428 . - . ID=Physo128372.3;Parent=Physo128372;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_4 . CDS 923614 923624 . - 0 ID=Physo128372;Parent=Physo128372;rank=2 scaffold_4 . exon 923614 923624 . - . ID=Physo128372.2;Parent=Physo128372;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 924635 925116 . - 0 ID=Physo128372;Parent=Physo128372;rank=1 scaffold_4 . exon 924635 925116 . - . ID=Physo128372.1;Parent=Physo128372;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 925527 930454 . - . ID=Physo128373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40217;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 925527 930454 . - . ID=Physo128373;Parent=Physo128373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 925527 925853 . - 0 ID=Physo128373;Parent=Physo128373;rank=10 scaffold_4 . exon 925527 925853 . - . ID=Physo128373.10;Parent=Physo128373;constitutive=1;rank=10 scaffold_4 . CDS 926021 927469 . - 0 ID=Physo128373;Parent=Physo128373;rank=9 scaffold_4 . CDS 927497 927551 . - 0 ID=Physo128373;Parent=Physo128373;rank=8 scaffold_4 . CDS 927901 928490 . - 0 ID=Physo128373;Parent=Physo128373;rank=7 scaffold_4 . CDS 928558 928701 . - 0 ID=Physo128373;Parent=Physo128373;rank=6 scaffold_4 . CDS 928788 928823 . - 0 ID=Physo128373;Parent=Physo128373;rank=5 scaffold_4 . CDS 928912 929127 . - 0 ID=Physo128373;Parent=Physo128373;rank=4 scaffold_4 . CDS 929523 929698 . - 0 ID=Physo128373;Parent=Physo128373;rank=3 scaffold_4 . CDS 929852 930092 . - 0 ID=Physo128373;Parent=Physo128373;rank=2 scaffold_4 . CDS 930158 930454 . - 0 ID=Physo128373;Parent=Physo128373;rank=1 scaffold_4 . biological_region 926348 926350 0.999 - . logic_name=eponine scaffold_4 . repeat_region 929243 929251 . ? . description=dust scaffold_4 . biological_region 929541 929541 0.999 + . logic_name=eponine scaffold_4 . exon 926021 927469 . - . ID=Physo128373.9;Parent=Physo128373;constitutive=1;rank=9 scaffold_4 . exon 927497 927551 . - . ID=Physo128373.8;Parent=Physo128373;constitutive=1;ensembl_phase=2;rank=8 scaffold_4 . exon 927901 928490 . - . ID=Physo128373.7;Parent=Physo128373;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_4 . exon 928558 928701 . - . ID=Physo128373.6;Parent=Physo128373;constitutive=1;rank=6 scaffold_4 . exon 928788 928823 . - . ID=Physo128373.5;Parent=Physo128373;constitutive=1;rank=5 scaffold_4 . exon 928912 929127 . - . ID=Physo128373.4;Parent=Physo128373;constitutive=1;rank=4 scaffold_4 . exon 929523 929698 . - . ID=Physo128373.3;Parent=Physo128373;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . exon 929852 930092 . - . ID=Physo128373.2;Parent=Physo128373;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . exon 930158 930454 . - . ID=Physo128373.1;Parent=Physo128373;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 933096 934244 . - . ID=Physo128374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40218;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 933096 934244 . - . ID=Physo128374;Parent=Physo128374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 933096 934244 . - 0 ID=Physo128374;Parent=Physo128374;rank=1 scaffold_4 . exon 933096 934244 . - . ID=Physo128374.1;Parent=Physo128374;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 934779 936728 . + . ID=Physo128375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40219;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 934779 936728 . + . ID=Physo128375;Parent=Physo128375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 934779 934883 . + . ID=Physo128375.1;Parent=Physo128375;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 934803 934883 . + 0 ID=Physo128375;Parent=Physo128375;rank=1 scaffold_4 . CDS 934954 935720 . + 0 ID=Physo128375;Parent=Physo128375;rank=2 scaffold_4 . exon 934954 935720 . + . ID=Physo128375.2;Parent=Physo128375;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 935794 936195 . + 0 ID=Physo128375;Parent=Physo128375;rank=3 scaffold_4 . CDS 936256 936333 . + 0 ID=Physo128375;Parent=Physo128375;rank=4 scaffold_4 . CDS 936432 936564 . + 0 ID=Physo128375;Parent=Physo128375;rank=5 scaffold_4 . CDS 936633 936728 . + 0 ID=Physo128375;Parent=Physo128375;rank=6 scaffold_4 ensembl protein_coding_gene 939218 940044 . - . ID=Physo108267;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40018;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 939218 940044 . - . ID=Physo108267;Parent=Physo108267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 939218 940027 . - 0 ID=Physo108267;Parent=Physo108267;rank=1 scaffold_4 . exon 939218 940044 . - . ID=Physo108267.1;Parent=Physo108267;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 941626 945690 . - . ID=Physo108268;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40019;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 941626 945690 . - . ID=Physo108268;Parent=Physo108268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 941626 943461 . - 0 ID=Physo108268;Parent=Physo108268;rank=4 scaffold_4 . exon 941626 943461 . - . ID=Physo108268.4;Parent=Physo108268;constitutive=1;rank=4 scaffold_4 . CDS 943519 945129 . - 0 ID=Physo108268;Parent=Physo108268;rank=3 scaffold_4 . exon 943519 945129 . - . ID=Physo108268.3;Parent=Physo108268;constitutive=1;rank=3 scaffold_4 . CDS 945210 945447 . - 0 ID=Physo108268;Parent=Physo108268;rank=2 scaffold_4 . exon 945210 945447 . - . ID=Physo108268.2;Parent=Physo108268;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 945533 945690 . - 0 ID=Physo108268;Parent=Physo108268;rank=1 scaffold_4 . exon 945533 945690 . - . ID=Physo108268.1;Parent=Physo108268;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . exon 935794 936195 . + . ID=Physo128375.3;Parent=Physo128375;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . exon 936256 936333 . + . ID=Physo128375.4;Parent=Physo128375;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_4 . exon 936432 936564 . + . ID=Physo128375.5;Parent=Physo128375;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 . exon 936633 936728 . + . ID=Physo128375.6;Parent=Physo128375;constitutive=1;rank=6 scaffold_4 ensembl protein_coding_gene 936823 937854 . - . ID=Physo128376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40220;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 936823 937854 . - . ID=Physo128376;Parent=Physo128376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 936823 937854 . - 0 ID=Physo128376;Parent=Physo128376;rank=1 scaffold_4 . exon 936823 937854 . - . ID=Physo128376.1;Parent=Physo128376;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 938096 939045 . + . ID=Physo128377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40221;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 938096 939045 . + . ID=Physo128377;Parent=Physo128377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 938096 938477 . + . ID=Physo128377.1;Parent=Physo128377;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 . CDS 938128 938477 . + 0 ID=Physo128377;Parent=Physo128377;rank=1 scaffold_4 . CDS 938554 938640 . + 0 ID=Physo128377;Parent=Physo128377;rank=2 scaffold_4 . exon 938554 938640 . + . ID=Physo128377.2;Parent=Physo128377;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 938715 939045 . + 0 ID=Physo128377;Parent=Physo128377;rank=3 scaffold_4 . exon 938715 939045 . + . ID=Physo128377.3;Parent=Physo128377;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 ensembl protein_coding_gene 940427 941506 . + . ID=Physo128379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40223;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 940427 941506 . + . ID=Physo128379;Parent=Physo128379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 940427 941506 . + 0 ID=Physo128379;Parent=Physo128379;rank=1 scaffold_4 . exon 940427 941506 . + . ID=Physo128379.1;Parent=Physo128379;constitutive=1;rank=1 scaffold_4 . biological_region 948459 948460 0.999 - . logic_name=eponine scaffold_4 . biological_region 949799 949804 0.999 - . logic_name=eponine scaffold_4 . biological_region 950131 950135 0.999 - . logic_name=eponine scaffold_4 . biological_region 951251 951256 0.999 - . logic_name=eponine scaffold_4 . repeat_region 951682 951722 . ? . description=dust scaffold_4 ensembl protein_coding_gene 951002 952368 . + . ID=Physo111035;biotype=protein_coding;external_name=estExt_Genewise1.C_40197;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 951002 952368 . + . ID=Physo111035;Parent=Physo111035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 951002 951369 . + . ID=Physo111035.1;Parent=Physo111035;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 . CDS 951089 951369 . + 0 ID=Physo111035;Parent=Physo111035;rank=1 scaffold_4 . CDS 951442 951661 . + 0 ID=Physo111035;Parent=Physo111035;rank=2 scaffold_4 . exon 951442 951661 . + . ID=Physo111035.2;Parent=Physo111035;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 951734 951873 . + 0 ID=Physo111035;Parent=Physo111035;rank=3 scaffold_4 . exon 951734 951873 . + . ID=Physo111035.3;Parent=Physo111035;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 951943 952021 . + 0 ID=Physo111035;Parent=Physo111035;rank=4 scaffold_4 . exon 951943 952021 . + . ID=Physo111035.4;Parent=Physo111035;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 952096 952131 . + 0 ID=Physo111035;Parent=Physo111035;rank=5 scaffold_4 . exon 952096 952131 . + . ID=Physo111035.5;Parent=Physo111035;constitutive=1;rank=5 scaffold_4 . CDS 952207 952368 . + 0 ID=Physo111035;Parent=Physo111035;rank=6 scaffold_4 . exon 952207 952368 . + . ID=Physo111035.6;Parent=Physo111035;constitutive=1;rank=6 scaffold_4 ensembl protein_coding_gene 947349 950184 . + . ID=Physo128381;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40225;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 947349 950184 . + . ID=Physo128381;Parent=Physo128381;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 947349 948239 . + 0 ID=Physo128381;Parent=Physo128381;rank=1 scaffold_4 . exon 947349 948239 . + . ID=Physo128381.1;Parent=Physo128381;constitutive=1;rank=1 scaffold_4 . CDS 948313 950184 . + 0 ID=Physo128381;Parent=Physo128381;rank=2 scaffold_4 . exon 948313 950184 . + . ID=Physo128381.2;Parent=Physo128381;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 962982 964452 . + . ID=Physo108269;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40020;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 962982 964452 . + . ID=Physo108269;Parent=Physo108269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 962982 964093 . + . ID=Physo108269.1;Parent=Physo108269;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 962984 964093 . + 0 ID=Physo108269;Parent=Physo108269;rank=1 scaffold_4 . CDS 964167 964293 . + 0 ID=Physo108269;Parent=Physo108269;rank=2 scaffold_4 . exon 964167 964293 . + . ID=Physo108269.2;Parent=Physo108269;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 964373 964452 . + 0 ID=Physo108269;Parent=Physo108269;rank=3 scaffold_4 . exon 964373 964452 . + . ID=Physo108269.3;Parent=Physo108269;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 ensembl protein_coding_gene 956812 957564 . + . ID=Physo128383;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40227;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 956812 957564 . + . ID=Physo128383;Parent=Physo128383;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 956812 957564 . + 0 ID=Physo128383;Parent=Physo128383;rank=1 scaffold_4 . exon 956812 957564 . + . ID=Physo128383.1;Parent=Physo128383;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 961483 962430 . + . ID=Physo128384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40228;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 961483 962430 . + . ID=Physo128384;Parent=Physo128384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 961483 962190 . + 0 ID=Physo128384;Parent=Physo128384;rank=1 scaffold_4 . exon 961483 962430 . + . ID=Physo128384.1;Parent=Physo128384;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 964599 965398 . - . ID=Physo128386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40230;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 964599 965398 . - . ID=Physo128386;Parent=Physo128386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 964599 964917 . - . ID=Physo128386.2;Parent=Physo128386;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_4 . CDS 964688 964917 . - 0 ID=Physo128386;Parent=Physo128386;rank=2 scaffold_4 . CDS 965011 965398 . - 0 ID=Physo128386;Parent=Physo128386;rank=1 scaffold_4 . exon 965011 965398 . - . ID=Physo128386.1;Parent=Physo128386;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . biological_region 965958 965962 0.999 - . logic_name=eponine scaffold_4 . biological_region 968855 968858 0.999 + . logic_name=eponine scaffold_4 . biological_region 968887 968889 0.999 + . logic_name=eponine scaffold_4 . repeat_region 969156 969191 . ? . description=trf scaffold_4 . repeat_region 969258 969301 . ? . description=dust scaffold_4 . repeat_region 969267 969302 . ? . description=trf scaffold_4 . repeat_region 969477 969500 . ? . description=dust scaffold_4 . biological_region 970557 970559 0.999 - . logic_name=eponine scaffold_4 . biological_region 970663 970663 0.999 + . logic_name=eponine scaffold_4 . biological_region 971036 971040 0.999 + . logic_name=eponine scaffold_4 . repeat_region 972501 972803 . ? . description=trf scaffold_4 . repeat_region 973830 973839 . ? . description=dust scaffold_4 . biological_region 974384 974386 0.999 - . logic_name=eponine scaffold_4 . biological_region 974676 974682 0.999 + . logic_name=eponine scaffold_4 . biological_region 974780 974786 0.999 + . logic_name=eponine scaffold_4 . biological_region 974797 974800 0.999 + . logic_name=eponine scaffold_4 . biological_region 974805 974811 0.999 + . logic_name=eponine scaffold_4 . biological_region 974852 974855 0.999 - . logic_name=eponine scaffold_4 . biological_region 974871 974880 0.999 - . logic_name=eponine scaffold_4 . biological_region 974904 974910 0.999 - . logic_name=eponine scaffold_4 . biological_region 975229 975234 0.999 - . logic_name=eponine scaffold_4 . biological_region 975286 975288 0.999 + . logic_name=eponine scaffold_4 . biological_region 975303 975308 0.999 - . logic_name=eponine scaffold_4 . biological_region 975309 975313 0.999 + . logic_name=eponine scaffold_4 . biological_region 975331 975336 0.999 + . logic_name=eponine scaffold_4 . biological_region 975348 975353 0.999 + . logic_name=eponine scaffold_4 . biological_region 975356 975361 0.999 + . logic_name=eponine scaffold_4 . repeat_region 975369 975412 . ? . description=trf scaffold_4 . biological_region 975417 975421 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 965848 967392 . - . ID=Physo128387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40231;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 965848 967392 . - . ID=Physo128387;Parent=Physo128387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 965848 967392 . - . ID=Physo128387.1;Parent=Physo128387;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 965986 967377 . - 0 ID=Physo128387;Parent=Physo128387;rank=1 scaffold_4 ensembl protein_coding_gene 968715 972119 . + . ID=Physo128388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40232;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 968715 972119 . + . ID=Physo128388;Parent=Physo128388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 968715 972119 . + 0 ID=Physo128388;Parent=Physo128388;rank=1 scaffold_4 . exon 968715 972119 . + . ID=Physo128388.1;Parent=Physo128388;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 973978 975444 . - . ID=Physo128389;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40233;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 973978 975444 . - . ID=Physo128389;Parent=Physo128389;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 973978 975444 . - 0 ID=Physo128389;Parent=Physo128389;rank=1 scaffold_4 . exon 973978 975444 . - . ID=Physo128389.1;Parent=Physo128389;constitutive=1;rank=1 scaffold_4 . repeat_region 976040 976218 . - . description=GypsyPi-1c_LTR scaffold_4 . repeat_region 976343 976665 . - . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 977234 977575 . - . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 978340 978713 . - . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 978715 983136 . - . description=GypsyPi-1c_I-int scaffold_4 . repeat_region 983137 983449 . - . description=GypsyPi-1c_LTR scaffold_4 ensembl protein_coding_gene 976529 978882 . + . ID=Physo128390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40234;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 976529 978882 . + . ID=Physo128390;Parent=Physo128390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 976529 977553 . + 0 ID=Physo128390;Parent=Physo128390;rank=1 scaffold_4 . exon 976529 977553 . + . ID=Physo128390.1;Parent=Physo128390;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 978392 978746 . + 0 ID=Physo128390;Parent=Physo128390;rank=2 scaffold_4 . exon 978392 978746 . + . ID=Physo128390.2;Parent=Physo128390;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 978859 978882 . + 0 ID=Physo128390;Parent=Physo128390;rank=3 scaffold_4 . exon 978859 978882 . + . ID=Physo128390.3;Parent=Physo128390;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 979146 983049 . - . ID=Physo128391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40235;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 979146 983049 . - . ID=Physo128391;Parent=Physo128391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 979146 981680 . - 0 ID=Physo128391;Parent=Physo128391;rank=3 scaffold_4 . exon 979146 981680 . - . ID=Physo128391.3;Parent=Physo128391;constitutive=1;rank=3 scaffold_4 . CDS 981761 981857 . - 0 ID=Physo128391;Parent=Physo128391;rank=2 scaffold_4 . exon 981761 981857 . - . ID=Physo128391.2;Parent=Physo128391;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 982049 983049 . - 0 ID=Physo128391;Parent=Physo128391;rank=1 scaffold_4 . exon 982049 983049 . - . ID=Physo128391.1;Parent=Physo128391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 984527 986969 . - . ID=Physo128392;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40236;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 984527 986969 . - . ID=Physo128392;Parent=Physo128392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 984527 984966 . - 0 ID=Physo128392;Parent=Physo128392;rank=3 scaffold_4 . exon 984527 984966 . - . ID=Physo128392.3;Parent=Physo128392;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 985099 986164 . - 0 ID=Physo128392;Parent=Physo128392;rank=2 scaffold_4 . exon 985099 986164 . - . ID=Physo128392.2;Parent=Physo128392;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 986205 986969 . - 0 ID=Physo128392;Parent=Physo128392;rank=1 scaffold_4 . repeat_region 986239 986294 . ? . description=trf scaffold_4 . repeat_region 986968 987145 . ? . description=trf scaffold_4 . repeat_region 987161 987202 . ? . description=trf scaffold_4 . repeat_region 988895 988910 . ? . description=dust scaffold_4 . repeat_region 989715 989758 . ? . description=trf scaffold_4 . repeat_region 989980 989987 . ? . description=dust scaffold_4 . biological_region 991448 991451 0.999 + . logic_name=eponine scaffold_4 . biological_region 991483 991484 0.999 - . logic_name=eponine scaffold_4 . biological_region 991520 991521 0.999 - . logic_name=eponine scaffold_4 . biological_region 991534 991540 0.999 + . logic_name=eponine scaffold_4 . biological_region 991540 991543 0.999 - . logic_name=eponine scaffold_4 . biological_region 991559 991563 0.999 + . logic_name=eponine scaffold_4 . biological_region 991576 991577 0.999 + . logic_name=eponine scaffold_4 . biological_region 991680 991681 0.999 - . logic_name=eponine scaffold_4 . biological_region 991685 991686 0.999 - . logic_name=eponine scaffold_4 . repeat_region 993994 994015 . ? . description=dust scaffold_4 . repeat_region 994494 994502 . ? . description=dust scaffold_4 . repeat_region 994703 994710 . ? . description=dust scaffold_4 . repeat_region 995146 995168 . ? . description=dust scaffold_4 . exon 986205 986969 . - . ID=Physo128392.1;Parent=Physo128392;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 991353 992217 . - . ID=Physo128393;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40237;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 991353 992217 . - . ID=Physo128393;Parent=Physo128393;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 991353 991544 . - 0 ID=Physo128393;Parent=Physo128393;rank=3 scaffold_4 . exon 991353 991544 . - . ID=Physo128393.3;Parent=Physo128393;constitutive=1;rank=3 scaffold_4 . CDS 991573 991702 . - 0 ID=Physo128393;Parent=Physo128393;rank=2 scaffold_4 . exon 991573 991702 . - . ID=Physo128393.2;Parent=Physo128393;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 992183 992217 . - 0 ID=Physo128393;Parent=Physo128393;rank=1 scaffold_4 . exon 992183 992217 . - . ID=Physo128393.1;Parent=Physo128393;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 993462 993923 . + . ID=Physo128394;biotype=protein_coding;description=PsAvh81 [Source:UniProtKB/TrEMBL%3BAcc:E0W4P9];external_name=estExt_fgenesh1_pg.C_40238;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 993462 993923 . + . ID=Physo128394;Parent=Physo128394;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 993462 993923 . + 0 ID=Physo128394;Parent=Physo128394;rank=1 scaffold_4 . exon 993462 993923 . + . ID=Physo128394.1;Parent=Physo128394;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1005093 1007018 . + . ID=Physo108270;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40021;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1005093 1007018 . + . ID=Physo108270;Parent=Physo108270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1005093 1005657 . + 0 ID=Physo108270;Parent=Physo108270;rank=1 scaffold_4 . exon 1005093 1005657 . + . ID=Physo108270.1;Parent=Physo108270;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 1005689 1005957 . + 0 ID=Physo108270;Parent=Physo108270;rank=2 scaffold_4 . CDS 1005993 1007018 . + 0 ID=Physo108270;Parent=Physo108270;rank=3 scaffold_4 ensembl protein_coding_gene 997970 999511 . + . ID=Physo128395;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40239;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 997970 999511 . + . ID=Physo128395;Parent=Physo128395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 997970 997977 . + 0 ID=Physo128395;Parent=Physo128395;rank=1 scaffold_4 . exon 997970 997977 . + . ID=Physo128395.1;Parent=Physo128395;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 998551 999511 . + 0 ID=Physo128395;Parent=Physo128395;rank=2 scaffold_4 . exon 998551 999511 . + . ID=Physo128395.2;Parent=Physo128395;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 1000772 1002547 . + . ID=Physo128396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40240;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1000772 1002547 . + . ID=Physo128396;Parent=Physo128396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1000772 1002547 . + 0 ID=Physo128396;Parent=Physo128396;rank=1 scaffold_4 . exon 1000772 1002547 . + . ID=Physo128396.1;Parent=Physo128396;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1003074 1004536 . + . ID=Physo128397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40241;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1003074 1004536 . + . ID=Physo128397;Parent=Physo128397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1003074 1003491 . + 0 ID=Physo128397;Parent=Physo128397;rank=1 scaffold_4 . exon 1003074 1003491 . + . ID=Physo128397.1;Parent=Physo128397;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 1003649 1003981 . + 0 ID=Physo128397;Parent=Physo128397;rank=2 scaffold_4 . exon 1003649 1003981 . + . ID=Physo128397.2;Parent=Physo128397;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 1004307 1004536 . + 0 ID=Physo128397;Parent=Physo128397;rank=3 scaffold_4 . exon 1004307 1004536 . + . ID=Physo128397.3;Parent=Physo128397;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . biological_region 1005856 1005857 0.999 + . logic_name=eponine scaffold_4 . biological_region 1008526 1008528 0.999 + . logic_name=eponine scaffold_4 . biological_region 1008593 1008598 0.999 + . logic_name=eponine scaffold_4 . biological_region 1008602 1008603 0.999 - . logic_name=eponine scaffold_4 . biological_region 1008611 1008612 0.999 + . logic_name=eponine scaffold_4 . biological_region 1008646 1008652 0.999 - . logic_name=eponine scaffold_4 . exon 1005689 1005957 . + . ID=Physo108270.2;Parent=Physo108270;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . exon 1005993 1007018 . + . ID=Physo108270.3;Parent=Physo108270;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 1014596 1015444 . - . ID=Physo111043;biotype=protein_coding;external_name=estExt_Genewise1.C_40205;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1014596 1015444 . - . ID=Physo111043;Parent=Physo111043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1014596 1015429 . - 0 ID=Physo111043;Parent=Physo111043;rank=1 scaffold_4 . exon 1014596 1015444 . - . ID=Physo111043.1;Parent=Physo111043;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 1007494 1010593 . - . ID=Physo128399;biotype=protein_coding;description=Putative nuclear LIM interactor-interacting protein [Source:UniProtKB/TrEMBL%3BAcc:Q5S7T1];external_name=NIF6;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1007494 1010593 . - . ID=Physo128399;Parent=Physo128399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1007494 1008209 . - . ID=Physo128399.4;Parent=Physo128399;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_4 . CDS 1007613 1008209 . - 0 ID=Physo128399;Parent=Physo128399;rank=4 scaffold_4 . CDS 1008283 1008807 . - 0 ID=Physo128399;Parent=Physo128399;rank=3 scaffold_4 . exon 1008283 1008807 . - . ID=Physo128399.3;Parent=Physo128399;constitutive=1;rank=3 scaffold_4 . CDS 1009099 1009543 . - 0 ID=Physo128399;Parent=Physo128399;rank=2 scaffold_4 . exon 1009099 1009543 . - . ID=Physo128399.2;Parent=Physo128399;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 1010106 1010593 . - 0 ID=Physo128399;Parent=Physo128399;rank=1 scaffold_4 . exon 1010106 1010593 . - . ID=Physo128399.1;Parent=Physo128399;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 1011311 1011916 . - . ID=Physo128400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40244;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1011311 1011916 . - . ID=Physo128400;Parent=Physo128400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1011311 1011916 . - . ID=Physo128400.1;Parent=Physo128400;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_4 . CDS 1011413 1011916 . - 0 ID=Physo128400;Parent=Physo128400;rank=1 scaffold_4 . repeat_region 1016243 1016266 . ? . description=dust scaffold_4 . repeat_region 1017223 1017263 . ? . description=trf scaffold_4 . repeat_region 1020561 1020568 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1015966 1016850 . - . ID=Physo128401;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40245;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1015966 1016850 . - . ID=Physo128401;Parent=Physo128401;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1015966 1016005 . - 0 ID=Physo128401;Parent=Physo128401;rank=4 scaffold_4 . exon 1015966 1016005 . - . ID=Physo128401.4;Parent=Physo128401;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 1016064 1016232 . - 0 ID=Physo128401;Parent=Physo128401;rank=3 scaffold_4 . exon 1016064 1016232 . - . ID=Physo128401.3;Parent=Physo128401;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_4 . CDS 1016315 1016700 . - 0 ID=Physo128401;Parent=Physo128401;rank=2 scaffold_4 . exon 1016315 1016700 . - . ID=Physo128401.2;Parent=Physo128401;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 1016801 1016850 . - 0 ID=Physo128401;Parent=Physo128401;rank=1 scaffold_4 . exon 1016801 1016850 . - . ID=Physo128401.1;Parent=Physo128401;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 1018013 1018846 . + . ID=Physo128402;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40246;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1018013 1018846 . + . ID=Physo128402;Parent=Physo128402;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1018013 1018029 . + 0 ID=Physo128402;Parent=Physo128402;rank=1 scaffold_4 . exon 1018013 1018029 . + . ID=Physo128402.1;Parent=Physo128402;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 1018099 1018186 . + 0 ID=Physo128402;Parent=Physo128402;rank=2 scaffold_4 . exon 1018099 1018186 . + . ID=Physo128402.2;Parent=Physo128402;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 1018226 1018846 . + 0 ID=Physo128402;Parent=Physo128402;rank=3 scaffold_4 . exon 1018226 1018846 . + . ID=Physo128402.3;Parent=Physo128402;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 1019919 1020825 . + . ID=Physo128403;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40247;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1019919 1020825 . + . ID=Physo128403;Parent=Physo128403;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1019919 1020630 . + 0 ID=Physo128403;Parent=Physo128403;rank=1 scaffold_4 . exon 1019919 1020630 . + . ID=Physo128403.1;Parent=Physo128403;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 1020697 1020773 . + 0 ID=Physo128403;Parent=Physo128403;rank=2 scaffold_4 . exon 1020697 1020773 . + . ID=Physo128403.2;Parent=Physo128403;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 1020817 1020825 . + 0 ID=Physo128403;Parent=Physo128403;rank=3 scaffold_4 . exon 1020817 1020825 . + . ID=Physo128403.3;Parent=Physo128403;constitutive=1;rank=3 scaffold_4 ensembl protein_coding_gene 1025319 1027077 . + . ID=Physo128404;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40248;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1025319 1027077 . + . ID=Physo128404;Parent=Physo128404;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1025319 1025666 . + . ID=Physo128404.1;Parent=Physo128404;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1025338 1025666 . + 0 ID=Physo128404;Parent=Physo128404;rank=1 scaffold_4 . CDS 1025776 1025832 . + 0 ID=Physo128404;Parent=Physo128404;rank=2 scaffold_4 . CDS 1025916 1027077 . + 0 ID=Physo128404;Parent=Physo128404;rank=3 scaffold_4 . biological_region 1027975 1027976 0.999 + . logic_name=eponine scaffold_4 . biological_region 1028345 1028359 0.999 + . logic_name=eponine scaffold_4 . biological_region 1030590 1030590 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1032167 1032661 . + . description=GypsyPi-1c_I-int scaffold_4 . biological_region 1032414 1032415 0.999 + . logic_name=eponine scaffold_4 . biological_region 1033037 1033039 0.999 + . logic_name=eponine scaffold_4 . repeat_region 1033087 1036041 . + . description=GypsyPi-1c_I-int scaffold_4 ensembl protein_coding_gene 1030451 1030636 . + . ID=Physo111044;biotype=protein_coding;external_name=estExt_Genewise1.C_40206;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1030451 1030636 . + . ID=Physo111044;Parent=Physo111044;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1030451 1030636 . + 0 ID=Physo111044;Parent=Physo111044;rank=1 scaffold_4 . exon 1030451 1030636 . + . ID=Physo111044.1;Parent=Physo111044;constitutive=1;rank=1 scaffold_4 . exon 1025776 1025832 . + . ID=Physo128404.2;Parent=Physo128404;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . exon 1025916 1027077 . + . ID=Physo128404.3;Parent=Physo128404;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 ensembl protein_coding_gene 1028042 1029235 . + . ID=Physo128405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40249;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1028042 1029235 . + . ID=Physo128405;Parent=Physo128405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1028042 1029235 . + 0 ID=Physo128405;Parent=Physo128405;rank=1 scaffold_4 . exon 1028042 1029235 . + . ID=Physo128405.1;Parent=Physo128405;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1031183 1035717 . + . ID=Physo128406;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40250;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1031183 1035717 . + . ID=Physo128406;Parent=Physo128406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1031183 1032155 . + 0 ID=Physo128406;Parent=Physo128406;rank=1 scaffold_4 . exon 1031183 1032155 . + . ID=Physo128406.1;Parent=Physo128406;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 1032317 1032527 . + 0 ID=Physo128406;Parent=Physo128406;rank=2 scaffold_4 . exon 1032317 1032527 . + . ID=Physo128406.2;Parent=Physo128406;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 1032780 1033649 . + 0 ID=Physo128406;Parent=Physo128406;rank=3 scaffold_4 . exon 1032780 1033649 . + . ID=Physo128406.3;Parent=Physo128406;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 1033873 1034683 . + 0 ID=Physo128406;Parent=Physo128406;rank=4 scaffold_4 . exon 1033873 1034683 . + . ID=Physo128406.4;Parent=Physo128406;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 1034882 1035644 . + 0 ID=Physo128406;Parent=Physo128406;rank=5 scaffold_4 . exon 1034882 1035644 . + . ID=Physo128406.5;Parent=Physo128406;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_4 . CDS 1035713 1035717 . + 0 ID=Physo128406;Parent=Physo128406;rank=6 scaffold_4 . repeat_region 1041667 1041767 . + . description=T-rich scaffold_4 . repeat_region 1041684 1041742 . ? . description=dust scaffold_4 . repeat_region 1041691 1041743 . ? . description=trf scaffold_4 . repeat_region 1043559 1043608 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1043313 1043519 . - . ID=Physo111047;biotype=protein_coding;external_name=estExt_Genewise1.C_40209;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1043313 1043519 . - . ID=Physo111047;Parent=Physo111047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1043313 1043444 . - 0 ID=Physo111047;Parent=Physo111047;rank=1 scaffold_4 . exon 1043313 1043519 . - . ID=Physo111047.1;Parent=Physo111047;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . exon 1035713 1035717 . + . ID=Physo128406.6;Parent=Physo128406;constitutive=1;ensembl_phase=1;rank=6 scaffold_4 ensembl protein_coding_gene 1036022 1037774 . - . ID=Physo128407;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40251;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1036022 1037774 . - . ID=Physo128407;Parent=Physo128407;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1036022 1036572 . - 0 ID=Physo128407;Parent=Physo128407;rank=4 scaffold_4 . exon 1036022 1036572 . - . ID=Physo128407.4;Parent=Physo128407;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 1036832 1036895 . - 0 ID=Physo128407;Parent=Physo128407;rank=3 scaffold_4 . exon 1036832 1036895 . - . ID=Physo128407.3;Parent=Physo128407;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . CDS 1036949 1037419 . - 0 ID=Physo128407;Parent=Physo128407;rank=2 scaffold_4 . exon 1036949 1037419 . - . ID=Physo128407.2;Parent=Physo128407;constitutive=1;rank=2 scaffold_4 . CDS 1037472 1037774 . - 0 ID=Physo128407;Parent=Physo128407;rank=1 scaffold_4 . exon 1037472 1037774 . - . ID=Physo128407.1;Parent=Physo128407;constitutive=1;rank=1 scaffold_4 . biological_region 1045576 1045578 0.999 - . logic_name=eponine scaffold_4 . biological_region 1051021 1051025 0.999 + . logic_name=eponine scaffold_4 . biological_region 1051074 1051082 0.999 - . logic_name=eponine scaffold_4 . biological_region 1051134 1051137 0.999 + . logic_name=eponine scaffold_4 . biological_region 1051288 1051290 0.999 - . logic_name=eponine scaffold_4 . biological_region 1051346 1051350 0.999 + . logic_name=eponine scaffold_4 . biological_region 1051413 1051415 0.999 + . logic_name=eponine scaffold_4 . repeat_region 1051838 1054170 . + . description=GypsyPi-1c_I-int scaffold_4 . biological_region 1052019 1052021 0.999 + . logic_name=eponine scaffold_4 . repeat_region 1054378 1054656 . + . description=GypsyPi-1c_I-int scaffold_4 . biological_region 1054659 1054659 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1047860 1049180 . - . ID=Physo128408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40252;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1047860 1049180 . - . ID=Physo128408;Parent=Physo128408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1047860 1048036 . - 0 ID=Physo128408;Parent=Physo128408;rank=4 scaffold_4 . exon 1047860 1048036 . - . ID=Physo128408.4;Parent=Physo128408;constitutive=1;rank=4 scaffold_4 . CDS 1048094 1048122 . - 0 ID=Physo128408;Parent=Physo128408;rank=3 scaffold_4 . exon 1048094 1048122 . - . ID=Physo128408.3;Parent=Physo128408;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 1048265 1048937 . - 0 ID=Physo128408;Parent=Physo128408;rank=2 scaffold_4 . exon 1048265 1048937 . - . ID=Physo128408.2;Parent=Physo128408;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 1049037 1049180 . - 0 ID=Physo128408;Parent=Physo128408;rank=1 scaffold_4 . exon 1049037 1049180 . - . ID=Physo128408.1;Parent=Physo128408;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1051145 1054307 . + . ID=Physo128409;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40253;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1051145 1054307 . + . ID=Physo128409;Parent=Physo128409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1051145 1051480 . + 0 ID=Physo128409;Parent=Physo128409;rank=1 scaffold_4 . exon 1051145 1051480 . + . ID=Physo128409.1;Parent=Physo128409;constitutive=1;rank=1 scaffold_4 . CDS 1051723 1052839 . + 0 ID=Physo128409;Parent=Physo128409;rank=2 scaffold_4 . exon 1051723 1052839 . + . ID=Physo128409.2;Parent=Physo128409;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 1052926 1054307 . + 0 ID=Physo128409;Parent=Physo128409;rank=3 scaffold_4 . exon 1052926 1054307 . + . ID=Physo128409.3;Parent=Physo128409;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . repeat_region 1060116 1060124 . ? . description=dust scaffold_4 . repeat_region 1061686 1061698 . ? . description=dust scaffold_4 . repeat_region 1061782 1061791 . ? . description=dust scaffold_4 . repeat_region 1062089 1062285 . ? . description=trf scaffold_4 . repeat_region 1062455 1062520 . ? . description=trf scaffold_4 . repeat_region 1062457 1062500 . ? . description=trf scaffold_4 . repeat_region 1062458 1062511 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1062082 1063136 . + . ID=Physo128410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40254;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1062082 1063136 . + . ID=Physo128410;Parent=Physo128410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1062082 1062124 . + 0 ID=Physo128410;Parent=Physo128410;rank=1 scaffold_4 . exon 1062082 1062124 . + . ID=Physo128410.1;Parent=Physo128410;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 1062278 1062778 . + 0 ID=Physo128410;Parent=Physo128410;rank=2 scaffold_4 . exon 1062278 1062778 . + . ID=Physo128410.2;Parent=Physo128410;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 1062867 1062943 . + 0 ID=Physo128410;Parent=Physo128410;rank=3 scaffold_4 . exon 1062867 1062943 . + . ID=Physo128410.3;Parent=Physo128410;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 1062978 1063136 . + 0 ID=Physo128410;Parent=Physo128410;rank=4 scaffold_4 . exon 1062978 1063136 . + . ID=Physo128410.4;Parent=Physo128410;constitutive=1;rank=4 scaffold_4 . biological_region 1068094 1068097 0.999 + . logic_name=eponine scaffold_4 . biological_region 1068116 1068117 0.999 + . logic_name=eponine scaffold_4 . biological_region 1072745 1072745 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1073911 1074520 . - . ID=Physo111052;biotype=protein_coding;external_name=estExt_Genewise1.C_40214;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1073911 1074520 . - . ID=Physo111052;Parent=Physo111052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1073911 1074520 . - . ID=Physo111052.1;Parent=Physo111052;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1074013 1074375 . - 0 ID=Physo111052;Parent=Physo111052;rank=1 scaffold_4 ensembl protein_coding_gene 1072420 1073602 . + . ID=Physo128411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40255;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1072420 1073602 . + . ID=Physo128411;Parent=Physo128411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1072420 1073602 . + . ID=Physo128411.1;Parent=Physo128411;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1072451 1073602 . + 0 ID=Physo128411;Parent=Physo128411;rank=1 scaffold_4 . repeat_region 1081458 1081498 . ? . description=trf scaffold_4 . repeat_region 1084537 1085652 . - . description=GypsyPi-1c_I-int scaffold_4 ensembl protein_coding_gene 1076303 1077499 . + . ID=Physo128412;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40256;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1076303 1077499 . + . ID=Physo128412;Parent=Physo128412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1076303 1077499 . + 0 ID=Physo128412;Parent=Physo128412;rank=1 scaffold_4 . exon 1076303 1077499 . + . ID=Physo128412.1;Parent=Physo128412;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1079843 1080651 . + . ID=Physo128413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40257;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1079843 1080651 . + . ID=Physo128413;Parent=Physo128413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1079843 1079902 . + 0 ID=Physo128413;Parent=Physo128413;rank=1 scaffold_4 . exon 1079843 1079902 . + . ID=Physo128413.1;Parent=Physo128413;constitutive=1;rank=1 scaffold_4 . CDS 1080058 1080651 . + 0 ID=Physo128413;Parent=Physo128413;rank=2 scaffold_4 . exon 1080058 1080651 . + . ID=Physo128413.2;Parent=Physo128413;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 1084301 1085771 . - . ID=Physo128414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40258;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1084301 1085771 . - . ID=Physo128414;Parent=Physo128414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1084301 1085628 . - 0 ID=Physo128414;Parent=Physo128414;rank=2 scaffold_4 . exon 1084301 1085628 . - . ID=Physo128414.2;Parent=Physo128414;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 1085756 1085771 . - 0 ID=Physo128414;Parent=Physo128414;rank=1 scaffold_4 . repeat_region 1087114 1087163 . ? . description=dust scaffold_4 . repeat_region 1088425 1088474 . ? . description=dust scaffold_4 . biological_region 1089770 1089771 0.999 + . logic_name=eponine scaffold_4 . biological_region 1089797 1089798 0.999 - . logic_name=eponine scaffold_4 . biological_region 1089834 1089837 0.999 - . logic_name=eponine scaffold_4 . exon 1085756 1085771 . - . ID=Physo128414.1;Parent=Physo128414;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 1089656 1091716 . + . ID=Physo128415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40259;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1089656 1091716 . + . ID=Physo128415;Parent=Physo128415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1089656 1091716 . + 0 ID=Physo128415;Parent=Physo128415;rank=1 scaffold_4 . exon 1089656 1091716 . + . ID=Physo128415.1;Parent=Physo128415;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1093214 1096552 . - . ID=Physo128416;biotype=protein_coding;description=Reverse transcriptase [Source:UniProtKB/TrEMBL%3BAcc:Q0Q537];external_name=estExt_fgenesh1_pg.C_40260;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1093214 1096552 . - . ID=Physo128416;Parent=Physo128416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1093214 1096552 . - 0 ID=Physo128416;Parent=Physo128416;rank=1 scaffold_4 . exon 1093214 1096552 . - . ID=Physo128416.1;Parent=Physo128416;constitutive=1;rank=1 scaffold_4 . repeat_region 1093450 1095839 . - . description=GypsyPi-1c_I-int scaffold_4 ensembl protein_coding_gene 1103797 1104514 . + . ID=Physo128417;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40261;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1103797 1104514 . + . ID=Physo128417;Parent=Physo128417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1103797 1104514 . + . ID=Physo128417.1;Parent=Physo128417;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1103861 1104514 . + 0 ID=Physo128417;Parent=Physo128417;rank=1 scaffold_4 . biological_region 1109510 1109518 0.999 + . logic_name=eponine scaffold_4 . biological_region 1109552 1109557 0.999 + . logic_name=eponine scaffold_4 . biological_region 1109581 1109583 0.999 + . logic_name=eponine scaffold_4 . biological_region 1109586 1109592 0.999 + . logic_name=eponine scaffold_4 . biological_region 1109600 1109603 0.999 + . logic_name=eponine scaffold_4 . biological_region 1109623 1109625 0.999 + . logic_name=eponine scaffold_4 . biological_region 1109627 1109634 0.999 - . logic_name=eponine scaffold_4 . biological_region 1109653 1109658 0.999 - . logic_name=eponine scaffold_4 . biological_region 1109663 1109667 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1109464 1113261 . + . ID=Physo128418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40262;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1109464 1113261 . + . ID=Physo128418;Parent=Physo128418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1109464 1113261 . + 0 ID=Physo128418;Parent=Physo128418;rank=1 scaffold_4 . exon 1109464 1113261 . + . ID=Physo128418.1;Parent=Physo128418;constitutive=1;rank=1 scaffold_4 . repeat_region 1120607 1120653 . ? . description=trf scaffold_4 . repeat_region 1121393 1121419 . ? . description=trf scaffold_4 . repeat_region 1121393 1121423 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1115223 1116091 . + . ID=Physo108271;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40022;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1115223 1116091 . + . ID=Physo108271;Parent=Physo108271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1115223 1115513 . + . ID=Physo108271.1;Parent=Physo108271;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1115256 1115513 . + 0 ID=Physo108271;Parent=Physo108271;rank=1 scaffold_4 . CDS 1115622 1115635 . + 0 ID=Physo108271;Parent=Physo108271;rank=2 scaffold_4 . exon 1115622 1115635 . + . ID=Physo108271.2;Parent=Physo108271;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 1115739 1115759 . + 0 ID=Physo108271;Parent=Physo108271;rank=3 scaffold_4 . exon 1115739 1115759 . + . ID=Physo108271.3;Parent=Physo108271;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 1115851 1115986 . + 0 ID=Physo108271;Parent=Physo108271;rank=4 scaffold_4 . exon 1115851 1116091 . + . ID=Physo108271.4;Parent=Physo108271;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_4 ensembl protein_coding_gene 1120090 1121334 . + . ID=Physo108272;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40023;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1120090 1121334 . + . ID=Physo108272;Parent=Physo108272;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1120090 1121334 . + 0 ID=Physo108272;Parent=Physo108272;rank=1 scaffold_4 . exon 1120090 1121334 . + . ID=Physo108272.1;Parent=Physo108272;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1116271 1118549 . + . ID=Physo128420;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40264;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1116271 1118549 . + . ID=Physo128420;Parent=Physo128420;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1116271 1116669 . + 0 ID=Physo128420;Parent=Physo128420;rank=1 scaffold_4 . exon 1116271 1116669 . + . ID=Physo128420.1;Parent=Physo128420;constitutive=1;rank=1 scaffold_4 . CDS 1116752 1116871 . + 0 ID=Physo128420;Parent=Physo128420;rank=2 scaffold_4 . exon 1116752 1116871 . + . ID=Physo128420.2;Parent=Physo128420;constitutive=1;rank=2 scaffold_4 . CDS 1116948 1117350 . + 0 ID=Physo128420;Parent=Physo128420;rank=3 scaffold_4 . exon 1116948 1117350 . + . ID=Physo128420.3;Parent=Physo128420;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_4 . CDS 1117642 1118194 . + 0 ID=Physo128420;Parent=Physo128420;rank=4 scaffold_4 . exon 1117642 1118194 . + . ID=Physo128420.4;Parent=Physo128420;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_4 . CDS 1118276 1118549 . + 0 ID=Physo128420;Parent=Physo128420;rank=5 scaffold_4 . exon 1118276 1118549 . + . ID=Physo128420.5;Parent=Physo128420;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 ensembl protein_coding_gene 1123065 1124856 . - . ID=Physo128422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40266;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1123065 1124856 . - . ID=Physo128422;Parent=Physo128422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1123065 1123146 . - . ID=Physo128422.2;Parent=Physo128422;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_4 . CDS 1123115 1123146 . - 0 ID=Physo128422;Parent=Physo128422;rank=2 scaffold_4 . CDS 1123167 1124856 . - 0 ID=Physo128422;Parent=Physo128422;rank=1 scaffold_4 . exon 1123167 1124856 . - . ID=Physo128422.1;Parent=Physo128422;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . biological_region 1125044 1125047 0.999 + . logic_name=eponine scaffold_4 . biological_region 1125176 1125178 0.999 + . logic_name=eponine scaffold_4 . biological_region 1125687 1125690 0.999 + . logic_name=eponine scaffold_4 . biological_region 1129335 1129336 0.999 - . logic_name=eponine scaffold_4 . biological_region 1130901 1130903 0.999 + . logic_name=eponine scaffold_4 . biological_region 1131735 1131736 0.999 + . logic_name=eponine scaffold_4 . biological_region 1131862 1131865 0.999 + . logic_name=eponine scaffold_4 . biological_region 1131974 1131979 0.999 - . logic_name=eponine scaffold_4 . biological_region 1131993 1131996 0.999 - . logic_name=eponine scaffold_4 . biological_region 1134398 1134407 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1125064 1126282 . + . ID=Physo128423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40267;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1125064 1126282 . + . ID=Physo128423;Parent=Physo128423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1125064 1125198 . + 0 ID=Physo128423;Parent=Physo128423;rank=1 scaffold_4 . exon 1125064 1125198 . + . ID=Physo128423.1;Parent=Physo128423;constitutive=1;rank=1 scaffold_4 . CDS 1125284 1126111 . + 0 ID=Physo128423;Parent=Physo128423;rank=2 scaffold_4 . exon 1125284 1126282 . + . ID=Physo128423.2;Parent=Physo128423;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_4 ensembl protein_coding_gene 1128634 1129975 . - . ID=Physo128424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40268;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1128634 1129975 . - . ID=Physo128424;Parent=Physo128424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1128634 1129975 . - . ID=Physo128424.1;Parent=Physo128424;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1128797 1129933 . - 0 ID=Physo128424;Parent=Physo128424;rank=1 scaffold_4 ensembl protein_coding_gene 1130582 1131970 . - . ID=Physo128425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40269;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1130582 1131970 . - . ID=Physo128425;Parent=Physo128425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1130582 1131970 . - 0 ID=Physo128425;Parent=Physo128425;rank=1 scaffold_4 . exon 1130582 1131970 . - . ID=Physo128425.1;Parent=Physo128425;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1132337 1134076 . - . ID=Physo128426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40270;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1132337 1134076 . - . ID=Physo128426;Parent=Physo128426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1132337 1134076 . - 0 ID=Physo128426;Parent=Physo128426;rank=1 scaffold_4 . exon 1132337 1134076 . - . ID=Physo128426.1;Parent=Physo128426;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1134394 1136415 . - . ID=Physo128427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40271;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1134394 1136415 . - . ID=Physo128427;Parent=Physo128427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1134394 1135833 . - 0 ID=Physo128427;Parent=Physo128427;rank=4 scaffold_4 . exon 1134394 1135833 . - . ID=Physo128427.4;Parent=Physo128427;constitutive=1;rank=4 scaffold_4 . CDS 1135909 1135992 . - 0 ID=Physo128427;Parent=Physo128427;rank=3 scaffold_4 . CDS 1136072 1136152 . - 0 ID=Physo128427;Parent=Physo128427;rank=2 scaffold_4 . CDS 1136227 1136415 . - 0 ID=Physo128427;Parent=Physo128427;rank=1 scaffold_4 . repeat_region 1136864 1136884 . ? . description=dust scaffold_4 . repeat_region 1136864 1136884 . ? . description=trf scaffold_4 . repeat_region 1137139 1137157 . ? . description=dust scaffold_4 . repeat_region 1143027 1143057 . ? . description=trf scaffold_4 . exon 1135909 1135992 . - . ID=Physo128427.3;Parent=Physo128427;constitutive=1;rank=3 scaffold_4 . exon 1136072 1136152 . - . ID=Physo128427.2;Parent=Physo128427;constitutive=1;rank=2 scaffold_4 . exon 1136227 1136415 . - . ID=Physo128427.1;Parent=Physo128427;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1141378 1142251 . - . ID=Physo128428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40272;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1141378 1142251 . - . ID=Physo128428;Parent=Physo128428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1141378 1141406 . - 0 ID=Physo128428;Parent=Physo128428;rank=3 scaffold_4 . exon 1141378 1141406 . - . ID=Physo128428.3;Parent=Physo128428;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 1141432 1141953 . - 0 ID=Physo128428;Parent=Physo128428;rank=2 scaffold_4 . exon 1141432 1141953 . - . ID=Physo128428.2;Parent=Physo128428;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 1142053 1142251 . - 0 ID=Physo128428;Parent=Physo128428;rank=1 scaffold_4 . exon 1142053 1142251 . - . ID=Physo128428.1;Parent=Physo128428;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . biological_region 1150647 1150652 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1144922 1145898 . - . ID=Physo128429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40273;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1144922 1145898 . - . ID=Physo128429;Parent=Physo128429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1144922 1145329 . - 0 ID=Physo128429;Parent=Physo128429;rank=3 scaffold_4 . exon 1144922 1145329 . - . ID=Physo128429.3;Parent=Physo128429;constitutive=1;rank=3 scaffold_4 . CDS 1145390 1145690 . - 0 ID=Physo128429;Parent=Physo128429;rank=2 scaffold_4 . exon 1145390 1145690 . - . ID=Physo128429.2;Parent=Physo128429;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 1145798 1145898 . - 0 ID=Physo128429;Parent=Physo128429;rank=1 scaffold_4 . exon 1145798 1145898 . - . ID=Physo128429.1;Parent=Physo128429;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 ensembl protein_coding_gene 1154609 1158858 . + . ID=Physo128430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40274;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1154609 1158858 . + . ID=Physo128430;Parent=Physo128430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1154609 1154661 . + 0 ID=Physo128430;Parent=Physo128430;rank=1 scaffold_4 . exon 1154609 1154661 . + . ID=Physo128430.1;Parent=Physo128430;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 1154685 1154929 . + 0 ID=Physo128430;Parent=Physo128430;rank=2 scaffold_4 . exon 1154685 1154929 . + . ID=Physo128430.2;Parent=Physo128430;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 1155113 1155990 . + 0 ID=Physo128430;Parent=Physo128430;rank=3 scaffold_4 . CDS 1156055 1156603 . + 0 ID=Physo128430;Parent=Physo128430;rank=4 scaffold_4 . CDS 1156752 1156777 . + 0 ID=Physo128430;Parent=Physo128430;rank=5 scaffold_4 . CDS 1156927 1157385 . + 0 ID=Physo128430;Parent=Physo128430;rank=6 scaffold_4 . CDS 1157421 1157710 . + 0 ID=Physo128430;Parent=Physo128430;rank=7 scaffold_4 . CDS 1157876 1158858 . + 0 ID=Physo128430;Parent=Physo128430;rank=8 scaffold_4 . repeat_region 1164499 1164507 . ? . description=dust scaffold_4 . exon 1155113 1155990 . + . ID=Physo128430.3;Parent=Physo128430;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . exon 1156055 1156603 . + . ID=Physo128430.4;Parent=Physo128430;constitutive=1;rank=4 scaffold_4 . exon 1156752 1156777 . + . ID=Physo128430.5;Parent=Physo128430;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_4 . exon 1156927 1157385 . + . ID=Physo128430.6;Parent=Physo128430;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_4 . exon 1157421 1157710 . + . ID=Physo128430.7;Parent=Physo128430;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_4 . exon 1157876 1158858 . + . ID=Physo128430.8;Parent=Physo128430;constitutive=1;ensembl_phase=1;rank=8 scaffold_4 ensembl protein_coding_gene 1164175 1164837 . - . ID=Physo128431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40275;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1164175 1164837 . - . ID=Physo128431;Parent=Physo128431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1164175 1164837 . - 0 ID=Physo128431;Parent=Physo128431;rank=1 scaffold_4 . exon 1164175 1164837 . - . ID=Physo128431.1;Parent=Physo128431;constitutive=1;rank=1 scaffold_4 . biological_region 1171997 1172001 0.999 - . logic_name=eponine scaffold_4 . biological_region 1172642 1172643 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1173010 1173101 . ? . description=trf scaffold_4 . biological_region 1173086 1173091 0.999 - . logic_name=eponine scaffold_4 . biological_region 1173181 1173184 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1173416 1173468 . ? . description=trf scaffold_4 . biological_region 1173829 1173834 0.999 + . logic_name=eponine scaffold_4 . repeat_region 1174098 1174150 . ? . description=trf scaffold_4 ensembl protein_coding_gene 1166836 1167075 . - . ID=Physo111067;biotype=protein_coding;external_name=estExt_Genewise1.C_40229;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1166836 1167075 . - . ID=Physo111067;Parent=Physo111067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1166836 1167075 . - 0 ID=Physo111067;Parent=Physo111067;rank=1 scaffold_4 . exon 1166836 1167075 . - . ID=Physo111067.1;Parent=Physo111067;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1169072 1170518 . - . ID=Physo128432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40276;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1169072 1170518 . - . ID=Physo128432;Parent=Physo128432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1169072 1169089 . - 0 ID=Physo128432;Parent=Physo128432;rank=2 scaffold_4 . exon 1169072 1169089 . - . ID=Physo128432.2;Parent=Physo128432;constitutive=1;rank=2 scaffold_4 . CDS 1169163 1170518 . - 0 ID=Physo128432;Parent=Physo128432;rank=1 scaffold_4 . exon 1169163 1170518 . - . ID=Physo128432.1;Parent=Physo128432;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1170743 1171144 . + . ID=Physo128433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40277;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1170743 1171144 . + . ID=Physo128433;Parent=Physo128433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1170743 1170768 . + 0 ID=Physo128433;Parent=Physo128433;rank=1 scaffold_4 . exon 1170743 1170768 . + . ID=Physo128433.1;Parent=Physo128433;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 1170832 1171144 . + 0 ID=Physo128433;Parent=Physo128433;rank=2 scaffold_4 . exon 1170832 1171144 . + . ID=Physo128433.2;Parent=Physo128433;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . repeat_region 1175243 1175250 . ? . description=dust scaffold_4 . repeat_region 1177597 1177776 . ? . description=dust scaffold_4 . repeat_region 1177598 1177776 . + . description=(CTG)n scaffold_4 . repeat_region 1181528 1181548 . ? . description=dust scaffold_4 . repeat_region 1183331 1183375 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1179274 1180875 . + . ID=Physo108273;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40024;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1179274 1180875 . + . ID=Physo108273;Parent=Physo108273;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1179274 1180875 . + 0 ID=Physo108273;Parent=Physo108273;rank=1 scaffold_4 . exon 1179274 1180875 . + . ID=Physo108273.1;Parent=Physo108273;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1176366 1177841 . + . ID=Physo128434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40278;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1176366 1177841 . + . ID=Physo128434;Parent=Physo128434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1176366 1177209 . + . ID=Physo128434.1;Parent=Physo128434;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1176458 1177209 . + 0 ID=Physo128434;Parent=Physo128434;rank=1 scaffold_4 . CDS 1177311 1177488 . + 0 ID=Physo128434;Parent=Physo128434;rank=2 scaffold_4 . exon 1177311 1177841 . + . ID=Physo128434.2;Parent=Physo128434;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_4 ensembl protein_coding_gene 1181078 1183903 . - . ID=Physo128436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40280;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1181078 1183903 . - . ID=Physo128436;Parent=Physo128436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1181078 1182077 . - 0 ID=Physo128436;Parent=Physo128436;rank=4 scaffold_4 . exon 1181078 1182077 . - . ID=Physo128436.4;Parent=Physo128436;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 1182145 1182244 . - 0 ID=Physo128436;Parent=Physo128436;rank=3 scaffold_4 . exon 1182145 1182244 . - . ID=Physo128436.3;Parent=Physo128436;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_4 . CDS 1182319 1182641 . - 0 ID=Physo128436;Parent=Physo128436;rank=2 scaffold_4 . exon 1182319 1182641 . - . ID=Physo128436.2;Parent=Physo128436;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 1183110 1183903 . - 0 ID=Physo128436;Parent=Physo128436;rank=1 scaffold_4 . exon 1183110 1183903 . - . ID=Physo128436.1;Parent=Physo128436;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . repeat_region 1187933 1187979 . ? . description=trf scaffold_4 . repeat_region 1192770 1192794 . ? . description=trf scaffold_4 . biological_region 1193161 1193163 0.999 + . logic_name=eponine scaffold_4 . biological_region 1193173 1193176 0.999 + . logic_name=eponine scaffold_4 . biological_region 1193237 1193240 0.999 + . logic_name=eponine scaffold_4 . biological_region 1193257 1193261 0.999 - . logic_name=eponine scaffold_4 . biological_region 1193275 1193279 0.999 + . logic_name=eponine scaffold_4 . biological_region 1193278 1193286 0.999 - . logic_name=eponine scaffold_4 . biological_region 1193299 1193305 0.999 + . logic_name=eponine scaffold_4 . biological_region 1193305 1193313 0.999 - . logic_name=eponine scaffold_4 . biological_region 1193927 1193932 0.999 + . logic_name=eponine scaffold_4 . repeat_region 1194466 1194486 . ? . description=trf scaffold_4 ensembl protein_coding_gene 1184683 1185899 . - . ID=Physo128437;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40281;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1184683 1185899 . - . ID=Physo128437;Parent=Physo128437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1184683 1185531 . - 0 ID=Physo128437;Parent=Physo128437;rank=1 scaffold_4 . exon 1184683 1185588 . - . ID=Physo128437.2;Parent=Physo128437;constitutive=1;ensembl_phase=-1;rank=2 scaffold_4 . exon 1185892 1185899 . - . ID=Physo128437.1;Parent=Physo128437;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 1187291 1188415 . + . ID=Physo128438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40282;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1187291 1188415 . + . ID=Physo128438;Parent=Physo128438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1187291 1188415 . + 0 ID=Physo128438;Parent=Physo128438;rank=1 scaffold_4 . exon 1187291 1188415 . + . ID=Physo128438.1;Parent=Physo128438;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1188820 1189203 . + . ID=Physo128439;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40283;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1188820 1189203 . + . ID=Physo128439;Parent=Physo128439;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1188820 1189203 . + 0 ID=Physo128439;Parent=Physo128439;rank=1 scaffold_4 . exon 1188820 1189203 . + . ID=Physo128439.1;Parent=Physo128439;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1189332 1193570 . - . ID=Physo128440;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40284;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1189332 1193570 . - . ID=Physo128440;Parent=Physo128440;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1189332 1193105 . - 0 ID=Physo128440;Parent=Physo128440;rank=2 scaffold_4 . exon 1189332 1193105 . - . ID=Physo128440.2;Parent=Physo128440;constitutive=1;rank=2 scaffold_4 . CDS 1193175 1193570 . - 0 ID=Physo128440;Parent=Physo128440;rank=1 scaffold_4 . exon 1193175 1193570 . - . ID=Physo128440.1;Parent=Physo128440;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1193941 1195344 . + . ID=Physo128441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40285;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1193941 1195344 . + . ID=Physo128441;Parent=Physo128441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1193941 1194190 . + 0 ID=Physo128441;Parent=Physo128441;rank=1 scaffold_4 . exon 1193941 1194190 . + . ID=Physo128441.1;Parent=Physo128441;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 1194273 1194498 . + 0 ID=Physo128441;Parent=Physo128441;rank=2 scaffold_4 . exon 1194273 1194498 . + . ID=Physo128441.2;Parent=Physo128441;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 1194569 1195163 . + 0 ID=Physo128441;Parent=Physo128441;rank=3 scaffold_4 . exon 1194569 1195163 . + . ID=Physo128441.3;Parent=Physo128441;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 1195243 1195344 . + 0 ID=Physo128441;Parent=Physo128441;rank=4 scaffold_4 . repeat_region 1203253 1203260 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1202153 1202913 . - . ID=Physo108275;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40026;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1202153 1202913 . - . ID=Physo108275;Parent=Physo108275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1202153 1202352 . - 0 ID=Physo108275;Parent=Physo108275;rank=3 scaffold_4 . exon 1202153 1202352 . - . ID=Physo108275.3;Parent=Physo108275;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 1202434 1202625 . - 0 ID=Physo108275;Parent=Physo108275;rank=2 scaffold_4 . exon 1202434 1202625 . - . ID=Physo108275.2;Parent=Physo108275;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 1202658 1202913 . - 0 ID=Physo108275;Parent=Physo108275;rank=1 scaffold_4 . exon 1202658 1202913 . - . ID=Physo108275.1;Parent=Physo108275;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 1197119 1201428 . - . ID=Physo111082;biotype=protein_coding;external_name=estExt_Genewise1.C_40244;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1197119 1201428 . - . ID=Physo111082;Parent=Physo111082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1197119 1199452 . - 0 ID=Physo111082;Parent=Physo111082;rank=3 scaffold_4 . exon 1197119 1199452 . - . ID=Physo111082.3;Parent=Physo111082;constitutive=1;rank=3 scaffold_4 . CDS 1199534 1200313 . - 0 ID=Physo111082;Parent=Physo111082;rank=2 scaffold_4 . exon 1199534 1200313 . - . ID=Physo111082.2;Parent=Physo111082;constitutive=1;rank=2 scaffold_4 . CDS 1200362 1201402 . - 0 ID=Physo111082;Parent=Physo111082;rank=1 scaffold_4 . exon 1200362 1201428 . - . ID=Physo111082.1;Parent=Physo111082;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . exon 1195243 1195344 . + . ID=Physo128441.4;Parent=Physo128441;constitutive=1;rank=4 scaffold_4 ensembl protein_coding_gene 1203411 1205249 . + . ID=Physo128444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40288;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1203411 1205249 . + . ID=Physo128444;Parent=Physo128444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1203411 1203482 . + 0 ID=Physo128444;Parent=Physo128444;rank=1 scaffold_4 . exon 1203411 1203482 . + . ID=Physo128444.1;Parent=Physo128444;constitutive=1;rank=1 scaffold_4 . CDS 1203658 1203753 . + 0 ID=Physo128444;Parent=Physo128444;rank=2 scaffold_4 . exon 1203658 1203753 . + . ID=Physo128444.2;Parent=Physo128444;constitutive=1;rank=2 scaffold_4 . CDS 1203828 1204181 . + 0 ID=Physo128444;Parent=Physo128444;rank=3 scaffold_4 . exon 1203828 1204181 . + . ID=Physo128444.3;Parent=Physo128444;constitutive=1;rank=3 scaffold_4 . CDS 1204290 1204394 . + 0 ID=Physo128444;Parent=Physo128444;rank=4 scaffold_4 . exon 1204290 1204394 . + . ID=Physo128444.4;Parent=Physo128444;constitutive=1;rank=4 scaffold_4 . CDS 1204481 1204572 . + 0 ID=Physo128444;Parent=Physo128444;rank=5 scaffold_4 . exon 1204481 1204572 . + . ID=Physo128444.5;Parent=Physo128444;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_4 . CDS 1204717 1205028 . + 0 ID=Physo128444;Parent=Physo128444;rank=6 scaffold_4 . CDS 1205135 1205249 . + 0 ID=Physo128444;Parent=Physo128444;rank=7 scaffold_4 . biological_region 1206938 1206942 0.999 - . logic_name=eponine scaffold_4 . biological_region 1207506 1207512 0.999 - . logic_name=eponine scaffold_4 . biological_region 1210641 1210645 0.999 + . logic_name=eponine scaffold_4 . biological_region 1210702 1210703 0.999 + . logic_name=eponine scaffold_4 . biological_region 1210723 1210729 0.999 + . logic_name=eponine scaffold_4 . biological_region 1210748 1210751 0.999 - . logic_name=eponine scaffold_4 . biological_region 1210761 1210767 0.999 - . logic_name=eponine scaffold_4 . biological_region 1210803 1210809 0.999 - . logic_name=eponine scaffold_4 . biological_region 1210834 1210837 0.999 - . logic_name=eponine scaffold_4 . biological_region 1210865 1210871 0.999 - . logic_name=eponine scaffold_4 . biological_region 1213349 1213350 0.999 + . logic_name=eponine scaffold_4 . biological_region 1214068 1214071 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1207314 1209744 . + . ID=Physo108276;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40027;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1207314 1209744 . + . ID=Physo108276;Parent=Physo108276;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1207314 1209608 . + 0 ID=Physo108276;Parent=Physo108276;rank=1 scaffold_4 . exon 1207314 1209744 . + . ID=Physo108276.1;Parent=Physo108276;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_4 . exon 1204717 1205028 . + . ID=Physo128444.6;Parent=Physo128444;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_4 . exon 1205135 1205249 . + . ID=Physo128444.7;Parent=Physo128444;constitutive=1;ensembl_phase=2;rank=7 scaffold_4 ensembl protein_coding_gene 1205434 1207062 . - . ID=Physo128445;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40289;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1205434 1207062 . - . ID=Physo128445;Parent=Physo128445;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1205434 1205717 . - . ID=Physo128445.8;Parent=Physo128445;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=8 scaffold_4 . CDS 1205612 1205717 . - 0 ID=Physo128445;Parent=Physo128445;rank=8 scaffold_4 . CDS 1205777 1205848 . - 0 ID=Physo128445;Parent=Physo128445;rank=7 scaffold_4 . exon 1205777 1205848 . - . ID=Physo128445.7;Parent=Physo128445;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_4 . CDS 1205925 1205977 . - 0 ID=Physo128445;Parent=Physo128445;rank=6 scaffold_4 . exon 1205925 1205977 . - . ID=Physo128445.6;Parent=Physo128445;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_4 . CDS 1206046 1206098 . - 0 ID=Physo128445;Parent=Physo128445;rank=5 scaffold_4 . exon 1206046 1206098 . - . ID=Physo128445.5;Parent=Physo128445;constitutive=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 1206166 1206227 . - 0 ID=Physo128445;Parent=Physo128445;rank=4 scaffold_4 . exon 1206166 1206227 . - . ID=Physo128445.4;Parent=Physo128445;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 1206305 1206399 . - 0 ID=Physo128445;Parent=Physo128445;rank=3 scaffold_4 . exon 1206305 1206399 . - . ID=Physo128445.3;Parent=Physo128445;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_4 . CDS 1206473 1206921 . - 0 ID=Physo128445;Parent=Physo128445;rank=2 scaffold_4 . exon 1206473 1206921 . - . ID=Physo128445.2;Parent=Physo128445;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 1206987 1207059 . - 0 ID=Physo128445;Parent=Physo128445;rank=1 scaffold_4 . exon 1206987 1207062 . - . ID=Physo128445.1;Parent=Physo128445;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 1209964 1210820 . - . ID=Physo128447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40291;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1209964 1210820 . - . ID=Physo128447;Parent=Physo128447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1209964 1210026 . - . ID=Physo128447.4;Parent=Physo128447;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_4 . CDS 1210006 1210026 . - 0 ID=Physo128447;Parent=Physo128447;rank=4 scaffold_4 . CDS 1210097 1210408 . - 0 ID=Physo128447;Parent=Physo128447;rank=3 scaffold_4 . exon 1210097 1210408 . - . ID=Physo128447.3;Parent=Physo128447;constitutive=1;rank=3 scaffold_4 . CDS 1210480 1210525 . - 0 ID=Physo128447;Parent=Physo128447;rank=2 scaffold_4 . exon 1210480 1210525 . - . ID=Physo128447.2;Parent=Physo128447;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 1210607 1210788 . - 0 ID=Physo128447;Parent=Physo128447;rank=1 scaffold_4 . exon 1210607 1210820 . - . ID=Physo128447.1;Parent=Physo128447;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 1213175 1213966 . - . ID=Physo128448;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40292;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1213175 1213966 . - . ID=Physo128448;Parent=Physo128448;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1213175 1213530 . - 0 ID=Physo128448;Parent=Physo128448;rank=2 scaffold_4 . exon 1213175 1213530 . - . ID=Physo128448.2;Parent=Physo128448;constitutive=1;ensembl_phase=1;rank=2 scaffold_4 . CDS 1213750 1213966 . - 0 ID=Physo128448;Parent=Physo128448;rank=1 scaffold_4 . exon 1213750 1213966 . - . ID=Physo128448.1;Parent=Physo128448;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 ensembl protein_coding_gene 1214798 1215901 . + . ID=Physo108277;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40028;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1214798 1215901 . + . ID=Physo108277;Parent=Physo108277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1214798 1215901 . + 0 ID=Physo108277;Parent=Physo108277;rank=1 scaffold_4 . exon 1214798 1215901 . + . ID=Physo108277.1;Parent=Physo108277;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1218681 1219181 . + . ID=Physo108278;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40029;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1218681 1219181 . + . ID=Physo108278;Parent=Physo108278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1218681 1218845 . + 0 ID=Physo108278;Parent=Physo108278;rank=1 scaffold_4 . exon 1218681 1218845 . + . ID=Physo108278.1;Parent=Physo108278;constitutive=1;rank=1 scaffold_4 . CDS 1218915 1219181 . + 0 ID=Physo108278;Parent=Physo108278;rank=2 scaffold_4 . exon 1218915 1219181 . + . ID=Physo108278.2;Parent=Physo108278;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 1216210 1217447 . + . ID=Physo128450;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40294;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1216210 1217447 . + . ID=Physo128450;Parent=Physo128450;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1216210 1216281 . + 0 ID=Physo128450;Parent=Physo128450;rank=1 scaffold_4 . exon 1216210 1216281 . + . ID=Physo128450.1;Parent=Physo128450;constitutive=1;rank=1 scaffold_4 . CDS 1216355 1216443 . + 0 ID=Physo128450;Parent=Physo128450;rank=2 scaffold_4 . exon 1216355 1216443 . + . ID=Physo128450.2;Parent=Physo128450;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 1216508 1216689 . + 0 ID=Physo128450;Parent=Physo128450;rank=3 scaffold_4 . exon 1216508 1216689 . + . ID=Physo128450.3;Parent=Physo128450;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 1216764 1216836 . + 0 ID=Physo128450;Parent=Physo128450;rank=4 scaffold_4 . exon 1216764 1216836 . + . ID=Physo128450.4;Parent=Physo128450;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_4 . CDS 1216906 1217113 . + 0 ID=Physo128450;Parent=Physo128450;rank=5 scaffold_4 . exon 1216906 1217113 . + . ID=Physo128450.5;Parent=Physo128450;constitutive=1;ensembl_phase=2;rank=5 scaffold_4 . CDS 1217187 1217447 . + 0 ID=Physo128450;Parent=Physo128450;rank=6 scaffold_4 . exon 1217187 1217447 . + . ID=Physo128450.6;Parent=Physo128450;constitutive=1;rank=6 scaffold_4 ensembl protein_coding_gene 1217940 1218558 . + . ID=Physo128451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40295;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1217940 1218558 . + . ID=Physo128451;Parent=Physo128451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1217940 1217999 . + 0 ID=Physo128451;Parent=Physo128451;rank=1 scaffold_4 . exon 1217940 1217999 . + . ID=Physo128451.1;Parent=Physo128451;constitutive=1;rank=1 scaffold_4 . CDS 1218064 1218152 . + 0 ID=Physo128451;Parent=Physo128451;rank=2 scaffold_4 . exon 1218064 1218152 . + . ID=Physo128451.2;Parent=Physo128451;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 1218228 1218409 . + 0 ID=Physo128451;Parent=Physo128451;rank=3 scaffold_4 . exon 1218228 1218409 . + . ID=Physo128451.3;Parent=Physo128451;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 1218486 1218556 . + 0 ID=Physo128451;Parent=Physo128451;rank=4 scaffold_4 . exon 1218486 1218558 . + . ID=Physo128451.4;Parent=Physo128451;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_4 ensembl protein_coding_gene 1221212 1221991 . + . ID=Physo128453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40297;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1221212 1221991 . + . ID=Physo128453;Parent=Physo128453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1221212 1221991 . + 0 ID=Physo128453;Parent=Physo128453;rank=1 scaffold_4 . exon 1221212 1221991 . + . ID=Physo128453.1;Parent=Physo128453;constitutive=1;rank=1 scaffold_4 . biological_region 1224611 1224611 0.999 - . logic_name=eponine scaffold_4 . biological_region 1225433 1225435 0.999 + . logic_name=eponine scaffold_4 . repeat_region 1229938 1229946 . ? . description=dust scaffold_4 . biological_region 1230970 1230974 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1231282 1231307 . ? . description=trf scaffold_4 . repeat_region 1231286 1231325 . ? . description=dust scaffold_4 . repeat_region 1231306 1231325 . ? . description=trf scaffold_4 . biological_region 1233549 1233553 0.999 - . logic_name=eponine scaffold_4 . biological_region 1233565 1233565 0.999 - . logic_name=eponine scaffold_4 . biological_region 1233571 1233574 0.999 + . logic_name=eponine scaffold_4 . biological_region 1233982 1233987 0.999 - . logic_name=eponine scaffold_4 . biological_region 1233993 1233997 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1231339 1232903 . - . ID=Physo108279;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40030;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1231339 1232903 . - . ID=Physo108279;Parent=Physo108279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1231339 1231358 . - 0 ID=Physo108279;Parent=Physo108279;rank=3 scaffold_4 . exon 1231339 1231358 . - . ID=Physo108279.3;Parent=Physo108279;constitutive=1;ensembl_phase=1;rank=3 scaffold_4 . CDS 1231547 1231547 . - 0 ID=Physo108279;Parent=Physo108279;rank=2 scaffold_4 . exon 1231547 1231547 . - . ID=Physo108279.2;Parent=Physo108279;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_4 . CDS 1231593 1232903 . - 0 ID=Physo108279;Parent=Physo108279;rank=1 scaffold_4 . exon 1231593 1232903 . - . ID=Physo108279.1;Parent=Physo108279;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1229994 1231232 . - . ID=Physo128454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40298;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1229994 1231232 . - . ID=Physo128454;Parent=Physo128454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1229994 1230950 . - 0 ID=Physo128454;Parent=Physo128454;rank=1 scaffold_4 . exon 1229994 1231232 . - . ID=Physo128454.1;Parent=Physo128454;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 1233032 1233677 . - . ID=Physo128456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40300;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1233032 1233677 . - . ID=Physo128456;Parent=Physo128456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1233032 1233677 . - . ID=Physo128456.1;Parent=Physo128456;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_4 . CDS 1233033 1233677 . - 0 ID=Physo128456;Parent=Physo128456;rank=1 scaffold_4 ensembl protein_coding_gene 1233843 1234587 . + . ID=Physo128457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40301;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1233843 1234587 . + . ID=Physo128457;Parent=Physo128457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1233843 1234379 . + 0 ID=Physo128457;Parent=Physo128457;rank=1 scaffold_4 . exon 1233843 1234379 . + . ID=Physo128457.1;Parent=Physo128457;constitutive=1;rank=1 scaffold_4 . CDS 1234462 1234587 . + 0 ID=Physo128457;Parent=Physo128457;rank=2 scaffold_4 ensembl protein_coding_gene 1235653 1238643 . - . ID=Physo108280;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40031;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1235653 1238643 . - . ID=Physo108280;Parent=Physo108280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1235653 1236867 . - 0 ID=Physo108280;Parent=Physo108280;rank=4 scaffold_4 . exon 1235653 1236867 . - . ID=Physo108280.4;Parent=Physo108280;constitutive=1;rank=4 scaffold_4 . CDS 1236960 1236963 . - 0 ID=Physo108280;Parent=Physo108280;rank=3 scaffold_4 . exon 1236960 1236963 . - . ID=Physo108280.3;Parent=Physo108280;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 1237004 1237055 . - 0 ID=Physo108280;Parent=Physo108280;rank=2 scaffold_4 . exon 1237004 1237055 . - . ID=Physo108280.2;Parent=Physo108280;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 1237194 1238643 . - 0 ID=Physo108280;Parent=Physo108280;rank=1 scaffold_4 . exon 1237194 1238643 . - . ID=Physo108280.1;Parent=Physo108280;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . exon 1234462 1234587 . + . ID=Physo128457.2;Parent=Physo128457;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 1235032 1235467 . + . ID=Physo128458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40302;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1235032 1235467 . + . ID=Physo128458;Parent=Physo128458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1235032 1235467 . + . ID=Physo128458.1;Parent=Physo128458;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1235055 1235369 . + 0 ID=Physo128458;Parent=Physo128458;rank=1 scaffold_4 ensembl protein_coding_gene 1238854 1240440 . + . ID=Physo128460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40304;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1238854 1240440 . + . ID=Physo128460;Parent=Physo128460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1238854 1239287 . + 0 ID=Physo128460;Parent=Physo128460;rank=1 scaffold_4 . exon 1238854 1239287 . + . ID=Physo128460.1;Parent=Physo128460;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 1239360 1239470 . + 0 ID=Physo128460;Parent=Physo128460;rank=2 scaffold_4 . exon 1239360 1239470 . + . ID=Physo128460.2;Parent=Physo128460;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 1239539 1239621 . + 0 ID=Physo128460;Parent=Physo128460;rank=3 scaffold_4 . exon 1239539 1239621 . + . ID=Physo128460.3;Parent=Physo128460;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 1239987 1240039 . + 0 ID=Physo128460;Parent=Physo128460;rank=4 scaffold_4 . exon 1239987 1240039 . + . ID=Physo128460.4;Parent=Physo128460;constitutive=1;ensembl_phase=1;rank=4 scaffold_4 . CDS 1240147 1240440 . + 0 ID=Physo128460;Parent=Physo128460;rank=5 scaffold_4 . exon 1240147 1240440 . + . ID=Physo128460.5;Parent=Physo128460;constitutive=1;rank=5 scaffold_4 . biological_region 1247665 1247667 0.999 + . logic_name=eponine scaffold_4 . repeat_region 1251826 1251856 . ? . description=trf scaffold_4 ensembl protein_coding_gene 1245363 1246085 . - . ID=Physo128461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40305;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1245363 1246085 . - . ID=Physo128461;Parent=Physo128461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1245363 1246085 . - 0 ID=Physo128461;Parent=Physo128461;rank=1 scaffold_4 . exon 1245363 1246085 . - . ID=Physo128461.1;Parent=Physo128461;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1247241 1248104 . + . ID=Physo128462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40306;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1247241 1248104 . + . ID=Physo128462;Parent=Physo128462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1247241 1248104 . + 0 ID=Physo128462;Parent=Physo128462;rank=1 scaffold_4 . exon 1247241 1248104 . + . ID=Physo128462.1;Parent=Physo128462;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1251807 1253879 . + . ID=Physo128463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40307;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1251807 1253879 . + . ID=Physo128463;Parent=Physo128463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1251807 1251900 . + 0 ID=Physo128463;Parent=Physo128463;rank=1 scaffold_4 . exon 1251807 1251900 . + . ID=Physo128463.1;Parent=Physo128463;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_4 . CDS 1251993 1252146 . + 0 ID=Physo128463;Parent=Physo128463;rank=2 scaffold_4 . exon 1251993 1252146 . + . ID=Physo128463.2;Parent=Physo128463;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_4 . CDS 1252234 1252428 . + 0 ID=Physo128463;Parent=Physo128463;rank=3 scaffold_4 . exon 1252234 1252428 . + . ID=Physo128463.3;Parent=Physo128463;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 1252504 1252619 . + 0 ID=Physo128463;Parent=Physo128463;rank=4 scaffold_4 . exon 1252504 1252619 . + . ID=Physo128463.4;Parent=Physo128463;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 1252695 1252880 . + 0 ID=Physo128463;Parent=Physo128463;rank=5 scaffold_4 . exon 1252695 1252880 . + . ID=Physo128463.5;Parent=Physo128463;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_4 . CDS 1252954 1253879 . + 0 ID=Physo128463;Parent=Physo128463;rank=6 scaffold_4 . exon 1252954 1253879 . + . ID=Physo128463.6;Parent=Physo128463;constitutive=1;ensembl_phase=1;rank=6 scaffold_4 . repeat_region 1258320 1258342 . ? . description=dust scaffold_4 . repeat_region 1258912 1258929 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1256354 1256883 . - . ID=Physo128464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40308;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1256354 1256883 . - . ID=Physo128464;Parent=Physo128464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1256354 1256883 . - . ID=Physo128464.1;Parent=Physo128464;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1256355 1256882 . - 0 ID=Physo128464;Parent=Physo128464;rank=1 scaffold_4 ensembl protein_coding_gene 1259710 1262380 . - . ID=Physo128466;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40310;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1259710 1262380 . - . ID=Physo128466;Parent=Physo128466;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1259710 1262197 . - . ID=Physo128466.2;Parent=Physo128466;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_4 . CDS 1260110 1262197 . - 0 ID=Physo128466;Parent=Physo128466;rank=2 scaffold_4 . CDS 1262308 1262349 . - 0 ID=Physo128466;Parent=Physo128466;rank=1 scaffold_4 . exon 1262308 1262380 . - . ID=Physo128466.1;Parent=Physo128466;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 1262543 1263442 . + . ID=Physo128467;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40311;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1262543 1263442 . + . ID=Physo128467;Parent=Physo128467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1262543 1263442 . + 0 ID=Physo128467;Parent=Physo128467;rank=1 scaffold_4 . exon 1262543 1263442 . + . ID=Physo128467.1;Parent=Physo128467;constitutive=1;rank=1 scaffold_4 . biological_region 1264431 1264432 0.999 + . logic_name=eponine scaffold_4 . biological_region 1267602 1267604 0.999 - . logic_name=eponine scaffold_4 . biological_region 1267687 1267688 0.999 - . logic_name=eponine scaffold_4 . biological_region 1268204 1268206 0.999 + . logic_name=eponine scaffold_4 . biological_region 1268544 1268547 0.999 + . logic_name=eponine scaffold_4 . biological_region 1268562 1268567 0.999 + . logic_name=eponine scaffold_4 . biological_region 1268574 1268580 0.999 + . logic_name=eponine scaffold_4 . biological_region 1268606 1268622 0.999 - . logic_name=eponine scaffold_4 . biological_region 1268608 1268611 0.999 + . logic_name=eponine scaffold_4 . biological_region 1268636 1268641 0.999 + . logic_name=eponine scaffold_4 . biological_region 1268700 1268707 0.999 - . logic_name=eponine scaffold_4 . biological_region 1268722 1268726 0.999 - . logic_name=eponine scaffold_4 . biological_region 1268903 1268906 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1269411 1269643 . ? . description=trf scaffold_4 . repeat_region 1269413 1269511 . ? . description=trf scaffold_4 ensembl protein_coding_gene 1266076 1267628 . - . ID=Physo108281;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40032;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1266076 1267628 . - . ID=Physo108281;Parent=Physo108281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1266076 1267395 . - . ID=Physo108281.2;Parent=Physo108281;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_4 . CDS 1266244 1267395 . - 0 ID=Physo108281;Parent=Physo108281;rank=2 scaffold_4 . CDS 1267469 1267600 . - 0 ID=Physo108281;Parent=Physo108281;rank=1 scaffold_4 . exon 1267469 1267628 . - . ID=Physo108281.1;Parent=Physo108281;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 1272575 1274059 . + . ID=Physo108282;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40033;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1272575 1274059 . + . ID=Physo108282;Parent=Physo108282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1272575 1272705 . + 0 ID=Physo108282;Parent=Physo108282;rank=1 scaffold_4 . exon 1272575 1272705 . + . ID=Physo108282.1;Parent=Physo108282;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 1272783 1273076 . + 0 ID=Physo108282;Parent=Physo108282;rank=2 scaffold_4 . exon 1272783 1273076 . + . ID=Physo108282.2;Parent=Physo108282;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 1273155 1273625 . + 0 ID=Physo108282;Parent=Physo108282;rank=3 scaffold_4 . exon 1273155 1273625 . + . ID=Physo108282.3;Parent=Physo108282;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 1273712 1273955 . + 0 ID=Physo108282;Parent=Physo108282;rank=4 scaffold_4 . exon 1273712 1274059 . + . ID=Physo108282.4;Parent=Physo108282;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_4 ensembl protein_coding_gene 1264567 1265913 . + . ID=Physo128468;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40312;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1264567 1265913 . + . ID=Physo128468;Parent=Physo128468;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1264567 1265913 . + 0 ID=Physo128468;Parent=Physo128468;rank=1 scaffold_4 . exon 1264567 1265913 . + . ID=Physo128468.1;Parent=Physo128468;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1269068 1269782 . + . ID=Physo128470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40314;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1269068 1269782 . + . ID=Physo128470;Parent=Physo128470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1269068 1269782 . + . ID=Physo128470.1;Parent=Physo128470;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1269110 1269646 . + 0 ID=Physo128470;Parent=Physo128470;rank=1 scaffold_4 ensembl protein_coding_gene 1269803 1272174 . - . ID=Physo128471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40315;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1269803 1272174 . - . ID=Physo128471;Parent=Physo128471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1269803 1271191 . - 0 ID=Physo128471;Parent=Physo128471;rank=4 scaffold_4 . exon 1269803 1271191 . - . ID=Physo128471.4;Parent=Physo128471;constitutive=1;rank=4 scaffold_4 . CDS 1271256 1271435 . - 0 ID=Physo128471;Parent=Physo128471;rank=3 scaffold_4 . exon 1271256 1271435 . - . ID=Physo128471.3;Parent=Physo128471;constitutive=1;rank=3 scaffold_4 . CDS 1271499 1271963 . - 0 ID=Physo128471;Parent=Physo128471;rank=2 scaffold_4 . exon 1271499 1271963 . - . ID=Physo128471.2;Parent=Physo128471;constitutive=1;rank=2 scaffold_4 . CDS 1272151 1272174 . - 0 ID=Physo128471;Parent=Physo128471;rank=1 scaffold_4 . exon 1272151 1272174 . - . ID=Physo128471.1;Parent=Physo128471;constitutive=1;rank=1 scaffold_4 . repeat_region 1275310 1275317 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1283038 1285791 . + . ID=Physo108283;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40034;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1283038 1285791 . + . ID=Physo108283;Parent=Physo108283;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1283038 1283724 . + 0 ID=Physo108283;Parent=Physo108283;rank=1 scaffold_4 . exon 1283038 1283724 . + . ID=Physo108283.1;Parent=Physo108283;constitutive=1;rank=1 scaffold_4 . CDS 1283842 1285791 . + 0 ID=Physo108283;Parent=Physo108283;rank=2 scaffold_4 . exon 1283842 1285791 . + . ID=Physo108283.2;Parent=Physo108283;constitutive=1;rank=2 scaffold_4 ensembl protein_coding_gene 1274484 1281424 . + . ID=Physo128473;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40317;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1274484 1281424 . + . ID=Physo128473;Parent=Physo128473;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1274484 1274570 . + 0 ID=Physo128473;Parent=Physo128473;rank=1 scaffold_4 . exon 1274484 1274570 . + . ID=Physo128473.1;Parent=Physo128473;constitutive=1;rank=1 scaffold_4 . CDS 1274868 1275025 . + 0 ID=Physo128473;Parent=Physo128473;rank=2 scaffold_4 . exon 1274868 1275025 . + . ID=Physo128473.2;Parent=Physo128473;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 1275364 1277412 . + 0 ID=Physo128473;Parent=Physo128473;rank=3 scaffold_4 . exon 1275364 1277412 . + . ID=Physo128473.3;Parent=Physo128473;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . CDS 1277488 1277725 . + 0 ID=Physo128473;Parent=Physo128473;rank=4 scaffold_4 . exon 1277488 1277725 . + . ID=Physo128473.4;Parent=Physo128473;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . CDS 1277797 1278165 . + 0 ID=Physo128473;Parent=Physo128473;rank=5 scaffold_4 . exon 1277797 1278165 . + . ID=Physo128473.5;Parent=Physo128473;constitutive=1;rank=5 scaffold_4 . CDS 1278260 1278323 . + 0 ID=Physo128473;Parent=Physo128473;rank=6 scaffold_4 . exon 1278260 1278323 . + . ID=Physo128473.6;Parent=Physo128473;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_4 . CDS 1278394 1278883 . + 0 ID=Physo128473;Parent=Physo128473;rank=7 scaffold_4 . exon 1278394 1278883 . + . ID=Physo128473.7;Parent=Physo128473;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_4 . CDS 1279148 1279867 . + 0 ID=Physo128473;Parent=Physo128473;rank=8 scaffold_4 . exon 1279148 1279867 . + . ID=Physo128473.8;Parent=Physo128473;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_4 . CDS 1279935 1280006 . + 0 ID=Physo128473;Parent=Physo128473;rank=9 scaffold_4 . exon 1279935 1280006 . + . ID=Physo128473.9;Parent=Physo128473;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_4 . CDS 1280283 1280502 . + 0 ID=Physo128473;Parent=Physo128473;rank=10 scaffold_4 . exon 1280283 1280502 . + . ID=Physo128473.10;Parent=Physo128473;constitutive=1;ensembl_phase=2;rank=10 scaffold_4 . CDS 1280565 1280645 . + 0 ID=Physo128473;Parent=Physo128473;rank=11 scaffold_4 . exon 1280565 1280645 . + . ID=Physo128473.11;Parent=Physo128473;constitutive=1;rank=11 scaffold_4 . CDS 1280714 1280767 . + 0 ID=Physo128473;Parent=Physo128473;rank=12 scaffold_4 . exon 1280714 1280767 . + . ID=Physo128473.12;Parent=Physo128473;constitutive=1;rank=12 scaffold_4 . CDS 1280963 1281424 . + 0 ID=Physo128473;Parent=Physo128473;rank=13 scaffold_4 . exon 1280963 1281424 . + . ID=Physo128473.13;Parent=Physo128473;constitutive=1;rank=13 scaffold_4 ensembl protein_coding_gene 1281490 1282658 . - . ID=Physo128474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40318;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1281490 1282658 . - . ID=Physo128474;Parent=Physo128474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1281490 1281686 . - . ID=Physo128474.2;Parent=Physo128474;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_4 . CDS 1281602 1281686 . - 0 ID=Physo128474;Parent=Physo128474;rank=2 scaffold_4 . CDS 1281730 1282472 . - 0 ID=Physo128474;Parent=Physo128474;rank=1 scaffold_4 . exon 1281730 1282658 . - . ID=Physo128474.1;Parent=Physo128474;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_4 . biological_region 1286189 1286194 0.999 - . logic_name=eponine scaffold_4 . biological_region 1287309 1287314 0.999 + . logic_name=eponine scaffold_4 . repeat_region 1288085 1288150 . ? . description=trf scaffold_4 . repeat_region 1288562 1288604 . ? . description=trf scaffold_4 . repeat_region 1288580 1288617 . ? . description=trf scaffold_4 . biological_region 1288672 1288675 0.999 - . logic_name=eponine scaffold_4 . biological_region 1288685 1288689 0.999 + . logic_name=eponine scaffold_4 . biological_region 1289683 1289686 0.999 + . logic_name=eponine scaffold_4 . biological_region 1289945 1289949 0.999 - . logic_name=eponine scaffold_4 . biological_region 1289974 1289979 0.999 + . logic_name=eponine scaffold_4 . biological_region 1290078 1290081 0.999 + . logic_name=eponine scaffold_4 . biological_region 1290171 1290173 0.999 - . logic_name=eponine scaffold_4 . biological_region 1290210 1290210 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1292137 1292167 . ? . description=trf scaffold_4 . biological_region 1292600 1292600 0.999 - . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1285853 1287364 . - . ID=Physo108284;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40035;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1285853 1287364 . - . ID=Physo108284;Parent=Physo108284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1285853 1287364 . - 0 ID=Physo108284;Parent=Physo108284;rank=1 scaffold_4 . exon 1285853 1287364 . - . ID=Physo108284.1;Parent=Physo108284;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1287617 1289036 . + . ID=Physo128477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40321;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1287617 1289036 . + . ID=Physo128477;Parent=Physo128477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1287617 1289036 . + . ID=Physo128477.1;Parent=Physo128477;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1287671 1288993 . + 0 ID=Physo128477;Parent=Physo128477;rank=1 scaffold_4 ensembl protein_coding_gene 1289830 1291601 . + . ID=Physo128478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40322;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1289830 1291601 . + . ID=Physo128478;Parent=Physo128478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1289830 1291601 . + . ID=Physo128478.1;Parent=Physo128478;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1289954 1291255 . + 0 ID=Physo128478;Parent=Physo128478;rank=1 scaffold_4 ensembl protein_coding_gene 1292046 1293421 . + . ID=Physo128479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40323;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1292046 1293421 . + . ID=Physo128479;Parent=Physo128479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1292046 1293323 . + 0 ID=Physo128479;Parent=Physo128479;rank=1 scaffold_4 . exon 1292046 1293323 . + . ID=Physo128479.1;Parent=Physo128479;constitutive=1;rank=1 scaffold_4 . CDS 1293374 1293421 . + 0 ID=Physo128479;Parent=Physo128479;rank=2 scaffold_4 . exon 1293374 1293421 . + . ID=Physo128479.2;Parent=Physo128479;constitutive=1;rank=2 scaffold_4 . repeat_region 1301496 1301503 . ? . description=dust scaffold_4 . biological_region 1306817 1306819 0.999 + . logic_name=eponine scaffold_4 . biological_region 1307380 1307384 0.999 - . logic_name=eponine scaffold_4 . biological_region 1307401 1307409 0.999 + . logic_name=eponine scaffold_4 . biological_region 1307436 1307442 0.999 + . logic_name=eponine scaffold_4 . biological_region 1307455 1307461 0.999 + . logic_name=eponine scaffold_4 . biological_region 1307494 1307497 0.999 - . logic_name=eponine scaffold_4 . biological_region 1307549 1307553 0.999 - . logic_name=eponine scaffold_4 . biological_region 1307928 1307934 0.999 + . logic_name=eponine scaffold_4 . biological_region 1307950 1307957 0.999 + . logic_name=eponine scaffold_4 . biological_region 1307971 1307972 0.999 + . logic_name=eponine scaffold_4 . biological_region 1307978 1307983 0.999 - . logic_name=eponine scaffold_4 . biological_region 1307988 1307992 0.999 + . logic_name=eponine scaffold_4 . biological_region 1308018 1308023 0.999 - . logic_name=eponine scaffold_4 . biological_region 1308075 1308076 0.999 - . logic_name=eponine scaffold_4 . biological_region 1308178 1308179 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1313728 1313747 . ? . description=trf scaffold_4 ensembl protein_coding_gene 1304241 1305842 . + . ID=Physo128480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40324;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1304241 1305842 . + . ID=Physo128480;Parent=Physo128480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1304241 1305842 . + 0 ID=Physo128480;Parent=Physo128480;rank=1 scaffold_4 . exon 1304241 1305842 . + . ID=Physo128480.1;Parent=Physo128480;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1305968 1307521 . - . ID=Physo128481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40325;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1305968 1307521 . - . ID=Physo128481;Parent=Physo128481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1305968 1307521 . - 0 ID=Physo128481;Parent=Physo128481;rank=1 scaffold_4 . exon 1305968 1307521 . - . ID=Physo128481.1;Parent=Physo128481;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1307887 1313466 . + . ID=Physo128482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40326;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1307887 1313466 . + . ID=Physo128482;Parent=Physo128482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1307887 1313466 . + 0 ID=Physo128482;Parent=Physo128482;rank=1 scaffold_4 . exon 1307887 1313466 . + . ID=Physo128482.1;Parent=Physo128482;constitutive=1;rank=1 scaffold_4 . repeat_region 1315216 1315225 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1315663 1318224 . + . ID=Physo128483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40327;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1315663 1318224 . + . ID=Physo128483;Parent=Physo128483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1315663 1318224 . + 0 ID=Physo128483;Parent=Physo128483;rank=1 scaffold_4 . exon 1315663 1318224 . + . ID=Physo128483.1;Parent=Physo128483;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1318346 1319050 . - . ID=Physo128484;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40328;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1318346 1319050 . - . ID=Physo128484;Parent=Physo128484;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1318346 1318498 . - 0 ID=Physo128484;Parent=Physo128484;rank=4 scaffold_4 . exon 1318346 1318498 . - . ID=Physo128484.4;Parent=Physo128484;constitutive=1;rank=4 scaffold_4 . CDS 1318566 1318665 . - 0 ID=Physo128484;Parent=Physo128484;rank=3 scaffold_4 . exon 1318566 1318665 . - . ID=Physo128484.3;Parent=Physo128484;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 . CDS 1318744 1318895 . - 0 ID=Physo128484;Parent=Physo128484;rank=2 scaffold_4 . exon 1318744 1318895 . - . ID=Physo128484.2;Parent=Physo128484;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_4 . CDS 1318982 1319050 . - 0 ID=Physo128484;Parent=Physo128484;rank=1 scaffold_4 . exon 1318982 1319050 . - . ID=Physo128484.1;Parent=Physo128484;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1319170 1320828 . + . ID=Physo128485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40329;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1319170 1320828 . + . ID=Physo128485;Parent=Physo128485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1319170 1319372 . + 0 ID=Physo128485;Parent=Physo128485;rank=1 scaffold_4 . exon 1319170 1319372 . + . ID=Physo128485.1;Parent=Physo128485;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 1319459 1319803 . + 0 ID=Physo128485;Parent=Physo128485;rank=2 scaffold_4 . exon 1319459 1319803 . + . ID=Physo128485.2;Parent=Physo128485;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 1319871 1320828 . + 0 ID=Physo128485;Parent=Physo128485;rank=3 scaffold_4 . exon 1319871 1320828 . + . ID=Physo128485.3;Parent=Physo128485;constitutive=1;ensembl_phase=2;rank=3 scaffold_4 ensembl protein_coding_gene 1320981 1326309 . - . ID=Physo128486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40330;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1320981 1326309 . - . ID=Physo128486;Parent=Physo128486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1320981 1325597 . - 0 ID=Physo128486;Parent=Physo128486;rank=4 scaffold_4 . exon 1320981 1325597 . - . ID=Physo128486.4;Parent=Physo128486;constitutive=1;rank=4 scaffold_4 . CDS 1325675 1325743 . - 0 ID=Physo128486;Parent=Physo128486;rank=3 scaffold_4 . CDS 1325817 1325927 . - 0 ID=Physo128486;Parent=Physo128486;rank=2 scaffold_4 . CDS 1326013 1326309 . - 0 ID=Physo128486;Parent=Physo128486;rank=1 scaffold_4 . repeat_region 1325756 1325791 . ? . description=trf scaffold_4 . biological_region 1326193 1326195 0.999 + . logic_name=eponine scaffold_4 . biological_region 1326260 1326260 0.999 - . logic_name=eponine scaffold_4 . biological_region 1326683 1326687 0.999 - . logic_name=eponine scaffold_4 . biological_region 1328582 1328586 0.999 - . logic_name=eponine scaffold_4 . biological_region 1328635 1328640 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1329499 1329521 . ? . description=trf scaffold_4 . biological_region 1329670 1329675 0.999 + . logic_name=eponine scaffold_4 . biological_region 1329714 1329716 0.999 - . logic_name=eponine scaffold_4 . biological_region 1331967 1331968 0.999 + . logic_name=eponine scaffold_4 . biological_region 1332566 1332572 0.999 - . logic_name=eponine scaffold_4 . biological_region 1332684 1332685 0.999 - . logic_name=eponine scaffold_4 . biological_region 1332783 1332788 0.999 + . logic_name=eponine scaffold_4 . biological_region 1332801 1332805 0.999 - . logic_name=eponine scaffold_4 . biological_region 1332912 1332912 0.999 - . logic_name=eponine scaffold_4 . biological_region 1332950 1332953 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1333586 1333673 . + . description=(CAG)n scaffold_4 . repeat_region 1333593 1333671 . ? . description=trf scaffold_4 . exon 1325675 1325743 . - . ID=Physo128486.3;Parent=Physo128486;constitutive=1;rank=3 scaffold_4 . exon 1325817 1325927 . - . ID=Physo128486.2;Parent=Physo128486;constitutive=1;rank=2 scaffold_4 . exon 1326013 1326309 . - . ID=Physo128486.1;Parent=Physo128486;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1326586 1328709 . - . ID=Physo128487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40331;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1326586 1328709 . - . ID=Physo128487;Parent=Physo128487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1326586 1328709 . - 0 ID=Physo128487;Parent=Physo128487;rank=1 scaffold_4 . exon 1326586 1328709 . - . ID=Physo128487.1;Parent=Physo128487;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1329537 1331461 . + . ID=Physo128488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40332;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1329537 1331461 . + . ID=Physo128488;Parent=Physo128488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1329537 1331378 . + 0 ID=Physo128488;Parent=Physo128488;rank=1 scaffold_4 . exon 1329537 1331461 . + . ID=Physo128488.1;Parent=Physo128488;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 1331786 1333091 . - . ID=Physo128489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40333;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1331786 1333091 . - . ID=Physo128489;Parent=Physo128489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1331786 1333075 . - 0 ID=Physo128489;Parent=Physo128489;rank=1 scaffold_4 . exon 1331786 1333091 . - . ID=Physo128489.1;Parent=Physo128489;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 ensembl protein_coding_gene 1333479 1335273 . + . ID=Physo128490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40334;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1333479 1335273 . + . ID=Physo128490;Parent=Physo128490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1333479 1333840 . + 0 ID=Physo128490;Parent=Physo128490;rank=1 scaffold_4 . exon 1333479 1333840 . + . ID=Physo128490.1;Parent=Physo128490;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . CDS 1333906 1333974 . + 0 ID=Physo128490;Parent=Physo128490;rank=2 scaffold_4 . exon 1333906 1333974 . + . ID=Physo128490.2;Parent=Physo128490;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_4 . CDS 1334040 1334057 . + 0 ID=Physo128490;Parent=Physo128490;rank=3 scaffold_4 . CDS 1334118 1334154 . + 0 ID=Physo128490;Parent=Physo128490;rank=4 scaffold_4 . CDS 1334219 1334640 . + 0 ID=Physo128490;Parent=Physo128490;rank=5 scaffold_4 . CDS 1334706 1334777 . + 0 ID=Physo128490;Parent=Physo128490;rank=6 scaffold_4 . CDS 1334871 1335273 . + 0 ID=Physo128490;Parent=Physo128490;rank=7 scaffold_4 . repeat_region 1338702 1338709 . ? . description=dust scaffold_4 . repeat_region 1338830 1338838 . ? . description=dust scaffold_4 . exon 1334040 1334057 . + . ID=Physo128490.3;Parent=Physo128490;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_4 . exon 1334118 1334154 . + . ID=Physo128490.4;Parent=Physo128490;constitutive=1;ensembl_phase=2;rank=4 scaffold_4 . exon 1334219 1334640 . + . ID=Physo128490.5;Parent=Physo128490;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_4 . exon 1334706 1334777 . + . ID=Physo128490.6;Parent=Physo128490;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_4 . exon 1334871 1335273 . + . ID=Physo128490.7;Parent=Physo128490;constitutive=1;ensembl_phase=2;rank=7 scaffold_4 ensembl protein_coding_gene 1335528 1336763 . - . ID=Physo128491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40335;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1335528 1336763 . - . ID=Physo128491;Parent=Physo128491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1335528 1336763 . - 0 ID=Physo128491;Parent=Physo128491;rank=1 scaffold_4 . exon 1335528 1336763 . - . ID=Physo128491.1;Parent=Physo128491;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1339443 1342205 . + . ID=Physo128492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40336;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1339443 1342205 . + . ID=Physo128492;Parent=Physo128492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1339443 1342205 . + 0 ID=Physo128492;Parent=Physo128492;rank=1 scaffold_4 . exon 1339443 1342205 . + . ID=Physo128492.1;Parent=Physo128492;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1342440 1343768 . - . ID=Physo128493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40337;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1342440 1343768 . - . ID=Physo128493;Parent=Physo128493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1342440 1343768 . - 0 ID=Physo128493;Parent=Physo128493;rank=1 scaffold_4 . exon 1342440 1343768 . - . ID=Physo128493.1;Parent=Physo128493;constitutive=1;rank=1 scaffold_4 . biological_region 1345897 1345897 0.999 - . logic_name=eponine scaffold_4 . biological_region 1347252 1347253 0.999 - . logic_name=eponine scaffold_4 . repeat_region 1348192 1348313 . ? . description=trf scaffold_4 . repeat_region 1349334 1349453 . ? . description=trf scaffold_4 . repeat_region 1349353 1349455 . ? . description=trf scaffold_4 . repeat_region 1349360 1349473 . ? . description=trf scaffold_4 . repeat_region 1349396 1349476 . ? . description=trf scaffold_4 . repeat_region 1350000 1350178 . ? . description=trf scaffold_4 . repeat_region 1353349 1353654 . + . description=GypsyPi-1c_LTR scaffold_4 . repeat_region 1353655 1355352 . + . description=GypsyPi-1c_I-int scaffold_4 ensembl protein_coding_gene 1345241 1347748 . + . ID=Physo128494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40338;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1345241 1347748 . + . ID=Physo128494;Parent=Physo128494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1345241 1347748 . + 0 ID=Physo128494;Parent=Physo128494;rank=1 scaffold_4 . exon 1345241 1347748 . + . ID=Physo128494.1;Parent=Physo128494;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1353742 1354707 . + . ID=Physo128495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40339;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1353742 1354707 . + . ID=Physo128495;Parent=Physo128495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1353742 1354707 . + 0 ID=Physo128495;Parent=Physo128495;rank=1 scaffold_4 . exon 1353742 1354707 . + . ID=Physo128495.1;Parent=Physo128495;constitutive=1;rank=1 scaffold_4 . repeat_region 1355919 1355927 . ? . description=dust scaffold_4 . repeat_region 1356447 1356454 . ? . description=dust scaffold_4 . repeat_region 1357245 1357255 . ? . description=dust scaffold_4 ensembl protein_coding_gene 1357546 1358919 . + . ID=Physo128496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40340;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1357546 1358919 . + . ID=Physo128496;Parent=Physo128496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1357546 1358919 . + 0 ID=Physo128496;Parent=Physo128496;rank=1 scaffold_4 . exon 1357546 1358919 . + . ID=Physo128496.1;Parent=Physo128496;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1361970 1362447 . - . ID=Physo128497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40341;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1361970 1362447 . - . ID=Physo128497;Parent=Physo128497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1361970 1362204 . - 0 ID=Physo128497;Parent=Physo128497;rank=2 scaffold_4 . exon 1361970 1362204 . - . ID=Physo128497.2;Parent=Physo128497;constitutive=1;ensembl_phase=2;rank=2 scaffold_4 . CDS 1362311 1362447 . - 0 ID=Physo128497;Parent=Physo128497;rank=1 scaffold_4 . exon 1362311 1362447 . - . ID=Physo128497.1;Parent=Physo128497;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_4 . biological_region 1366695 1366696 0.999 + . logic_name=eponine scaffold_4 . biological_region 1373499 1373505 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1365700 1368871 . - . ID=Physo128498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40342;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1365700 1368871 . - . ID=Physo128498;Parent=Physo128498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1365700 1365750 . - 0 ID=Physo128498;Parent=Physo128498;rank=2 scaffold_4 . exon 1365700 1365750 . - . ID=Physo128498.2;Parent=Physo128498;constitutive=1;rank=2 scaffold_4 . CDS 1365875 1368871 . - 0 ID=Physo128498;Parent=Physo128498;rank=1 scaffold_4 . exon 1365875 1368871 . - . ID=Physo128498.1;Parent=Physo128498;constitutive=1;rank=1 scaffold_4 . repeat_region 1377776 1377785 . ? . description=dust scaffold_4 . repeat_region 1378047 1378056 . ? . description=dust scaffold_4 . repeat_region 1379043 1379115 . ? . description=trf scaffold_4 . repeat_region 1379258 1379265 . ? . description=dust scaffold_4 . repeat_region 1381997 1382005 . ? . description=dust scaffold_4 . repeat_region 1382797 1383032 . + . description=Polinton-1_PI scaffold_4 ensembl protein_coding_gene 1375232 1375876 . - . ID=Physo108285;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_40036;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1375232 1375876 . - . ID=Physo108285;Parent=Physo108285;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1375232 1375876 . - 0 ID=Physo108285;Parent=Physo108285;rank=1 scaffold_4 . exon 1375232 1375876 . - . ID=Physo108285.1;Parent=Physo108285;constitutive=1;rank=1 scaffold_4 . repeat_region 1394447 1394574 . - . description=Polinton-1_PI scaffold_4 . repeat_region 1394955 1394962 . ? . description=dust scaffold_4 . repeat_region 1396056 1396071 . ? . description=dust scaffold_4 . repeat_region 1396710 1396869 . ? . description=trf scaffold_4 . repeat_region 1397619 1397627 . ? . description=dust scaffold_4 . repeat_region 1400162 1400169 . ? . description=dust scaffold_4 . repeat_region 1400547 1400582 . ? . description=dust scaffold_4 . repeat_region 1400547 1400587 . ? . description=trf scaffold_4 . repeat_region 1400547 1400587 . + . description=(TATG)n scaffold_4 . repeat_region 1401618 1401630 . ? . description=dust scaffold_4 . repeat_region 1401799 1401860 . ? . description=trf scaffold_4 ensembl protein_coding_gene 1401975 1402454 . + . ID=Physo128500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40344;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1401975 1402454 . + . ID=Physo128500;Parent=Physo128500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1401975 1402454 . + 0 ID=Physo128500;Parent=Physo128500;rank=1 scaffold_4 . exon 1401975 1402454 . + . ID=Physo128500.1;Parent=Physo128500;constitutive=1;rank=1 scaffold_4 ensembl protein_coding_gene 1402772 1403590 . + . ID=Physo128501;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40345;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1402772 1403590 . + . ID=Physo128501;Parent=Physo128501;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1402772 1403590 . + 0 ID=Physo128501;Parent=Physo128501;rank=1 scaffold_4 . exon 1402772 1403590 . + . ID=Physo128501.1;Parent=Physo128501;constitutive=1;rank=1 scaffold_4 . biological_region 1403748 1403751 0.999 + . logic_name=eponine scaffold_4 . biological_region 1410039 1410041 0.999 - . logic_name=eponine scaffold_4 . biological_region 1412977 1412978 0.999 + . logic_name=eponine scaffold_4 ensembl protein_coding_gene 1410071 1411246 . + . ID=Physo128502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40346;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1410071 1411246 . + . ID=Physo128502;Parent=Physo128502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . CDS 1410071 1411246 . + 0 ID=Physo128502;Parent=Physo128502;rank=1 scaffold_4 . exon 1410071 1411246 . + . ID=Physo128502.1;Parent=Physo128502;constitutive=1;rank=1 scaffold_4 . repeat_region 1416167 1416180 . ? . description=dust scaffold_4 . repeat_region 1421442 1421796 . ? . description=trf scaffold_4 . repeat_region 1421928 1421963 . ? . description=trf scaffold_4 . repeat_region 1421980 1422149 . ? . description=trf scaffold_4 . repeat_region 1422058 1422104 . ? . description=trf scaffold_4 ensembl protein_coding_gene 1420850 1422177 . + . ID=Physo128503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_40347;logic_name=jgi_physo1_1 scaffold_4 ensembl transcript 1420850 1422177 . + . ID=Physo128503;Parent=Physo128503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_4 . exon 1420850 1422177 . + . ID=Physo128503.1;Parent=Physo128503;constitutive=1;ensembl_phase=-1;rank=1 scaffold_4 . CDS 1421239 1422177 . + 0 ID=Physo128503;Parent=Physo128503;rank=1 ##gff-version 3 ##sequence-region scaffold_3 1 1472674 scaffold_3 . biological_region 98 104 0.999 - . logic_name=eponine scaffold_3 . biological_region 7176 7181 0.999 + . logic_name=eponine scaffold_3 . repeat_region 7443 7578 . + . description=Gypsy-2-I_PI-int scaffold_3 . biological_region 8735 8738 0.999 + . logic_name=eponine scaffold_3 ensembl tRNA_gene 198 269 . + . ID=EPrPSOG00000000024;biotype=tRNA;description=tRNA-Ala for anticodon UGC [Source:TRNASCAN_SE%3BAcc:tRNA-Ala];external_name=tRNA-Ala;logic_name=ncrna_eg scaffold_3 ensembl transcript 198 269 . + . ID=EPrPSOT00000000024;Parent=EPrPSOG00000000024;biotype=tRNA;logic_name=ncrna_eg scaffold_3 ensembl tRNA_gene 3206 3274 . - . ID=EPrPSOG00000000041;biotype=tRNA;description=tRNA-Met for anticodon CAU [Source:TRNASCAN_SE%3BAcc:tRNA-Met];external_name=tRNA-Met;logic_name=ncrna_eg scaffold_3 ensembl transcript 3206 3274 . - . ID=EPrPSOT00000000041;Parent=EPrPSOG00000000041;biotype=tRNA;logic_name=ncrna_eg scaffold_3 . exon 198 269 . + . ID=EPrPSOE00000000024;Parent=EPrPSOT00000000024;constitutive=1;rank=1 scaffold_3 . exon 3206 3274 . - . ID=EPrPSOE00000000041;Parent=EPrPSOT00000000041;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1452 1997 . + . ID=Physo127792;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30001;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1452 1997 . + . ID=Physo127792;Parent=Physo127792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1452 1997 . + 0 ID=Physo127792;Parent=Physo127792;rank=1 scaffold_3 . exon 1452 1997 . + . ID=Physo127792.1;Parent=Physo127792;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 2502 2917 . + . ID=Physo127793;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30002;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 2502 2917 . + . ID=Physo127793;Parent=Physo127793;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 2502 2552 . + 0 ID=Physo127793;Parent=Physo127793;rank=1 scaffold_3 . exon 2502 2552 . + . ID=Physo127793.1;Parent=Physo127793;constitutive=1;rank=1 scaffold_3 . CDS 2609 2917 . + 0 ID=Physo127793;Parent=Physo127793;rank=2 scaffold_3 . exon 2609 2917 . + . ID=Physo127793.2;Parent=Physo127793;constitutive=1;rank=2 scaffold_3 . repeat_region 10194 10202 . ? . description=dust scaffold_3 . repeat_region 12162 12169 . ? . description=dust scaffold_3 . repeat_region 12902 12925 . ? . description=dust scaffold_3 . repeat_region 15903 15910 . ? . description=dust scaffold_3 . repeat_region 16093 16100 . ? . description=dust scaffold_3 . repeat_region 16710 16717 . ? . description=dust scaffold_3 ensembl protein_coding_gene 17696 19484 . + . ID=Physo108212;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30001;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 17696 19484 . + . ID=Physo108212;Parent=Physo108212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 17696 19255 . + 0 ID=Physo108212;Parent=Physo108212;rank=1 scaffold_3 . exon 17696 19484 . + . ID=Physo108212.1;Parent=Physo108212;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 19864 20446 . + . ID=Physo127795;biotype=protein_coding;description=Elicitin-like protein SOL13G [Source:UniProtKB/TrEMBL%3BAcc:Q2N066];external_name=estExt_fgenesh1_pg.C_30004;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 19864 20446 . + . ID=Physo127795;Parent=Physo127795;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 19864 20372 . + 0 ID=Physo127795;Parent=Physo127795;rank=1 scaffold_3 . exon 19864 20372 . + . ID=Physo127795.1;Parent=Physo127795;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 20434 20446 . + 0 ID=Physo127795;Parent=Physo127795;rank=2 scaffold_3 . repeat_region 25903 25936 . ? . description=trf scaffold_3 . biological_region 26031 26032 0.999 + . logic_name=eponine scaffold_3 . biological_region 26243 26244 0.999 + . logic_name=eponine scaffold_3 . biological_region 26297 26300 0.999 + . logic_name=eponine scaffold_3 . biological_region 27138 27140 0.999 + . logic_name=eponine scaffold_3 . biological_region 27721 27723 0.999 - . logic_name=eponine scaffold_3 . biological_region 27748 27756 0.999 + . logic_name=eponine scaffold_3 . biological_region 27777 27783 0.999 + . logic_name=eponine scaffold_3 . biological_region 27779 27786 0.999 - . logic_name=eponine scaffold_3 . biological_region 27813 27817 0.999 - . logic_name=eponine scaffold_3 . biological_region 27834 27839 0.999 + . logic_name=eponine scaffold_3 . biological_region 28211 28217 0.999 - . logic_name=eponine scaffold_3 . biological_region 28268 28272 0.999 + . logic_name=eponine scaffold_3 . biological_region 28291 28292 0.999 - . logic_name=eponine scaffold_3 . biological_region 28715 28716 0.999 - . logic_name=eponine scaffold_3 . exon 20434 20446 . + . ID=Physo127795.2;Parent=Physo127795;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 ensembl protein_coding_gene 20798 23530 . - . ID=Physo127796;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30005;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 20798 23530 . - . ID=Physo127796;Parent=Physo127796;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 20798 22002 . - . ID=Physo127796.8;Parent=Physo127796;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_3 . CDS 20854 22002 . - 0 ID=Physo127796;Parent=Physo127796;rank=8 scaffold_3 . CDS 22064 22108 . - 0 ID=Physo127796;Parent=Physo127796;rank=7 scaffold_3 . exon 22064 22108 . - . ID=Physo127796.7;Parent=Physo127796;constitutive=1;rank=7 scaffold_3 . CDS 22140 22173 . - 0 ID=Physo127796;Parent=Physo127796;rank=6 scaffold_3 . exon 22140 22173 . - . ID=Physo127796.6;Parent=Physo127796;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 . CDS 22270 22329 . - 0 ID=Physo127796;Parent=Physo127796;rank=5 scaffold_3 . exon 22270 22329 . - . ID=Physo127796.5;Parent=Physo127796;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_3 . CDS 22542 22610 . - 0 ID=Physo127796;Parent=Physo127796;rank=4 scaffold_3 . exon 22542 22610 . - . ID=Physo127796.4;Parent=Physo127796;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_3 . CDS 22678 22743 . - 0 ID=Physo127796;Parent=Physo127796;rank=3 scaffold_3 . exon 22678 22743 . - . ID=Physo127796.3;Parent=Physo127796;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 22818 23066 . - 0 ID=Physo127796;Parent=Physo127796;rank=2 scaffold_3 . exon 22818 23066 . - . ID=Physo127796.2;Parent=Physo127796;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 23142 23530 . - 0 ID=Physo127796;Parent=Physo127796;rank=1 scaffold_3 . exon 23142 23530 . - . ID=Physo127796.1;Parent=Physo127796;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 24195 25533 . + . ID=Physo127797;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30006;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 24195 25533 . + . ID=Physo127797;Parent=Physo127797;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 24195 24660 . + 0 ID=Physo127797;Parent=Physo127797;rank=1 scaffold_3 . exon 24195 24660 . + . ID=Physo127797.1;Parent=Physo127797;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 25076 25533 . + 0 ID=Physo127797;Parent=Physo127797;rank=2 scaffold_3 . exon 25076 25533 . + . ID=Physo127797.2;Parent=Physo127797;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 25915 27308 . - . ID=Physo155334;biotype=protein_coding;external_name=C_scaffold_3000004;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 25915 27308 . - . ID=Physo155334;Parent=Physo155334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 25915 25920 . - 0 ID=Physo155334;Parent=Physo155334;rank=6 scaffold_3 . exon 25915 25920 . - . ID=Physo155334.6;Parent=Physo155334;constitutive=1;rank=6 scaffold_3 . CDS 26092 26493 . - 0 ID=Physo155334;Parent=Physo155334;rank=5 scaffold_3 . exon 26092 26493 . - . ID=Physo155334.5;Parent=Physo155334;constitutive=1;rank=5 scaffold_3 . CDS 26587 26675 . - 0 ID=Physo155334;Parent=Physo155334;rank=4 scaffold_3 . exon 26587 26675 . - . ID=Physo155334.4;Parent=Physo155334;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 26759 26973 . - 0 ID=Physo155334;Parent=Physo155334;rank=3 scaffold_3 . exon 26759 26973 . - . ID=Physo155334.3;Parent=Physo155334;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 27058 27217 . - 0 ID=Physo155334;Parent=Physo155334;rank=2 scaffold_3 . exon 27058 27217 . - . ID=Physo155334.2;Parent=Physo155334;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 27284 27308 . - 0 ID=Physo155334;Parent=Physo155334;rank=1 scaffold_3 . exon 27284 27308 . - . ID=Physo155334.1;Parent=Physo155334;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 27812 33444 . + . ID=Physo155337;biotype=protein_coding;external_name=C_scaffold_3000007;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 27812 33444 . + . ID=Physo155337;Parent=Physo155337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 27812 28490 . + 0 ID=Physo155337;Parent=Physo155337;rank=1 scaffold_3 . exon 27812 28490 . + . ID=Physo155337.1;Parent=Physo155337;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 28575 30317 . + 0 ID=Physo155337;Parent=Physo155337;rank=2 scaffold_3 . exon 28575 30317 . + . ID=Physo155337.2;Parent=Physo155337;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 30360 31525 . + 0 ID=Physo155337;Parent=Physo155337;rank=3 scaffold_3 . CDS 31580 31825 . + 0 ID=Physo155337;Parent=Physo155337;rank=4 scaffold_3 . CDS 31997 32579 . + 0 ID=Physo155337;Parent=Physo155337;rank=5 scaffold_3 . CDS 32607 33348 . + 0 ID=Physo155337;Parent=Physo155337;rank=6 scaffold_3 . CDS 33405 33444 . + 0 ID=Physo155337;Parent=Physo155337;rank=7 scaffold_3 . repeat_region 33613 33668 . ? . description=dust scaffold_3 . repeat_region 33984 34014 . ? . description=dust scaffold_3 . repeat_region 36173 36182 . ? . description=dust scaffold_3 . repeat_region 39020 39033 . ? . description=dust scaffold_3 . exon 30360 31525 . + . ID=Physo155337.3;Parent=Physo155337;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . exon 31580 31825 . + . ID=Physo155337.4;Parent=Physo155337;constitutive=1;rank=4 scaffold_3 . exon 31997 32579 . + . ID=Physo155337.5;Parent=Physo155337;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_3 . exon 32607 33348 . + . ID=Physo155337.6;Parent=Physo155337;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_3 . exon 33405 33444 . + . ID=Physo155337.7;Parent=Physo155337;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 ensembl protein_coding_gene 33678 34556 . - . ID=Physo155338;biotype=protein_coding;external_name=C_scaffold_3000008;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 33678 34556 . - . ID=Physo155338;Parent=Physo155338;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 33678 34099 . - 0 ID=Physo155338;Parent=Physo155338;rank=3 scaffold_3 . exon 33678 34099 . - . ID=Physo155338.3;Parent=Physo155338;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 34181 34470 . - 0 ID=Physo155338;Parent=Physo155338;rank=2 scaffold_3 . exon 34181 34470 . - . ID=Physo155338.2;Parent=Physo155338;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 34492 34556 . - 0 ID=Physo155338;Parent=Physo155338;rank=1 scaffold_3 . exon 34492 34556 . - . ID=Physo155338.1;Parent=Physo155338;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 36210 36509 . - . ID=Physo155341;biotype=protein_coding;external_name=C_scaffold_3000011;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 36210 36509 . - . ID=Physo155341;Parent=Physo155341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 36210 36345 . - 0 ID=Physo155341;Parent=Physo155341;rank=2 scaffold_3 . exon 36210 36345 . - . ID=Physo155341.2;Parent=Physo155341;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 36442 36509 . - 0 ID=Physo155341;Parent=Physo155341;rank=1 scaffold_3 . exon 36442 36509 . - . ID=Physo155341.1;Parent=Physo155341;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 36614 37319 . + . ID=Physo155343;biotype=protein_coding;external_name=C_scaffold_3000013;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 36614 37319 . + . ID=Physo155343;Parent=Physo155343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 36614 36700 . + 0 ID=Physo155343;Parent=Physo155343;rank=1 scaffold_3 . exon 36614 36700 . + . ID=Physo155343.1;Parent=Physo155343;constitutive=1;rank=1 scaffold_3 . CDS 36800 36949 . + 0 ID=Physo155343;Parent=Physo155343;rank=2 scaffold_3 . exon 36800 36949 . + . ID=Physo155343.2;Parent=Physo155343;constitutive=1;rank=2 scaffold_3 . CDS 37056 37319 . + 0 ID=Physo155343;Parent=Physo155343;rank=3 scaffold_3 . exon 37056 37319 . + . ID=Physo155343.3;Parent=Physo155343;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 37406 38716 . - . ID=Physo155345;biotype=protein_coding;external_name=C_scaffold_3000015;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 37406 38716 . - . ID=Physo155345;Parent=Physo155345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 37406 37895 . - 0 ID=Physo155345;Parent=Physo155345;rank=6 scaffold_3 . exon 37406 37895 . - . ID=Physo155345.6;Parent=Physo155345;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 . CDS 37955 38010 . - 0 ID=Physo155345;Parent=Physo155345;rank=5 scaffold_3 . exon 37955 38010 . - . ID=Physo155345.5;Parent=Physo155345;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_3 . CDS 38142 38198 . - 0 ID=Physo155345;Parent=Physo155345;rank=4 scaffold_3 . exon 38142 38198 . - . ID=Physo155345.4;Parent=Physo155345;constitutive=1;rank=4 scaffold_3 . CDS 38273 38343 . - 0 ID=Physo155345;Parent=Physo155345;rank=3 scaffold_3 . exon 38273 38343 . - . ID=Physo155345.3;Parent=Physo155345;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 38412 38584 . - 0 ID=Physo155345;Parent=Physo155345;rank=2 scaffold_3 . exon 38412 38584 . - . ID=Physo155345.2;Parent=Physo155345;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 38655 38716 . - 0 ID=Physo155345;Parent=Physo155345;rank=1 scaffold_3 . exon 38655 38716 . - . ID=Physo155345.1;Parent=Physo155345;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . repeat_region 43006 43186 . ? . description=trf scaffold_3 . repeat_region 43006 43219 . ? . description=trf scaffold_3 . repeat_region 43010 43206 . ? . description=trf scaffold_3 . repeat_region 43097 43219 . ? . description=trf scaffold_3 . repeat_region 48656 48851 . + . description=Polinton-1_PI scaffold_3 . repeat_region 48708 48737 . ? . description=trf scaffold_3 ensembl protein_coding_gene 42656 43942 . + . ID=Physo108213;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30002;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 42656 43942 . + . ID=Physo108213;Parent=Physo108213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 42656 43091 . + 0 ID=Physo108213;Parent=Physo108213;rank=1 scaffold_3 . exon 42656 43091 . + . ID=Physo108213.1;Parent=Physo108213;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 43428 43942 . + 0 ID=Physo108213;Parent=Physo108213;rank=2 scaffold_3 . exon 43428 43942 . + . ID=Physo108213.2;Parent=Physo108213;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 45517 46873 . - . ID=Physo127805;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30014;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 45517 46873 . - . ID=Physo127805;Parent=Physo127805;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 45517 46458 . - 0 ID=Physo127805;Parent=Physo127805;rank=3 scaffold_3 . exon 45517 46458 . - . ID=Physo127805.3;Parent=Physo127805;constitutive=1;rank=3 scaffold_3 . CDS 46545 46754 . - 0 ID=Physo127805;Parent=Physo127805;rank=2 scaffold_3 . exon 46545 46754 . - . ID=Physo127805.2;Parent=Physo127805;constitutive=1;rank=2 scaffold_3 . CDS 46826 46873 . - 0 ID=Physo127805;Parent=Physo127805;rank=1 scaffold_3 . exon 46826 46873 . - . ID=Physo127805.1;Parent=Physo127805;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 46994 48503 . + . ID=Physo127806;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30015;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 46994 48503 . + . ID=Physo127806;Parent=Physo127806;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 46994 47994 . + 0 ID=Physo127806;Parent=Physo127806;rank=1 scaffold_3 . exon 46994 47994 . + . ID=Physo127806.1;Parent=Physo127806;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 48089 48177 . + 0 ID=Physo127806;Parent=Physo127806;rank=2 scaffold_3 . exon 48089 48177 . + . ID=Physo127806.2;Parent=Physo127806;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 48262 48338 . + 0 ID=Physo127806;Parent=Physo127806;rank=3 scaffold_3 . exon 48262 48338 . + . ID=Physo127806.3;Parent=Physo127806;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 48414 48503 . + 0 ID=Physo127806;Parent=Physo127806;rank=4 scaffold_3 . exon 48414 48503 . + . ID=Physo127806.4;Parent=Physo127806;constitutive=1;rank=4 scaffold_3 . biological_region 50850 50855 0.999 - . logic_name=eponine scaffold_3 . biological_region 51894 51900 0.999 - . logic_name=eponine scaffold_3 . biological_region 53600 53608 0.999 + . logic_name=eponine scaffold_3 . biological_region 53642 53646 0.999 + . logic_name=eponine scaffold_3 . biological_region 53679 53683 0.999 - . logic_name=eponine scaffold_3 . repeat_region 56310 56318 . ? . description=dust scaffold_3 . repeat_region 56754 56765 . ? . description=dust scaffold_3 . repeat_region 58034 58047 . ? . description=dust scaffold_3 ensembl protein_coding_gene 50634 51884 . - . ID=Physo127807;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30016;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 50634 51884 . - . ID=Physo127807;Parent=Physo127807;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 50634 51884 . - 0 ID=Physo127807;Parent=Physo127807;rank=1 scaffold_3 . exon 50634 51884 . - . ID=Physo127807.1;Parent=Physo127807;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 52475 53937 . - . ID=Physo127808;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30017;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 52475 53937 . - . ID=Physo127808;Parent=Physo127808;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 52475 53064 . - . ID=Physo127808.2;Parent=Physo127808;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_3 . CDS 52669 53064 . - 0 ID=Physo127808;Parent=Physo127808;rank=2 scaffold_3 . CDS 53143 53937 . - 0 ID=Physo127808;Parent=Physo127808;rank=1 scaffold_3 . exon 53143 53937 . - . ID=Physo127808.1;Parent=Physo127808;constitutive=1;rank=1 scaffold_3 . repeat_region 61229 61372 . ? . description=trf scaffold_3 . repeat_region 61229 61372 . ? . description=trf scaffold_3 . repeat_region 61232 61372 . ? . description=trf scaffold_3 . repeat_region 63318 63355 . ? . description=trf scaffold_3 ensembl protein_coding_gene 65677 66675 . + . ID=Physo127809;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30018;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 65677 66675 . + . ID=Physo127809;Parent=Physo127809;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 65677 65826 . + . ID=Physo127809.1;Parent=Physo127809;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . exon 65893 66372 . + . ID=Physo127809.2;Parent=Physo127809;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_3 . CDS 66165 66372 . + 0 ID=Physo127809;Parent=Physo127809;rank=1 scaffold_3 . CDS 66443 66675 . + 0 ID=Physo127809;Parent=Physo127809;rank=2 scaffold_3 . exon 66443 66675 . + . ID=Physo127809.3;Parent=Physo127809;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . repeat_region 71911 71918 . ? . description=dust scaffold_3 . biological_region 74046 74047 0.999 + . logic_name=eponine scaffold_3 . biological_region 74057 74059 0.999 - . logic_name=eponine scaffold_3 . biological_region 75251 75252 0.999 - . logic_name=eponine scaffold_3 . biological_region 75622 75624 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 73969 75810 . + . ID=Physo108214;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30003;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 73969 75810 . + . ID=Physo108214;Parent=Physo108214;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 73969 75810 . + 0 ID=Physo108214;Parent=Physo108214;rank=1 scaffold_3 . exon 73969 75810 . + . ID=Physo108214.1;Parent=Physo108214;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 73323 73793 . + . ID=Physo127810;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30019;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 73323 73793 . + . ID=Physo127810;Parent=Physo127810;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 73323 73793 . + 0 ID=Physo127810;Parent=Physo127810;rank=1 scaffold_3 . exon 73323 73793 . + . ID=Physo127810.1;Parent=Physo127810;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 76025 82164 . - . ID=Physo155347;biotype=protein_coding;external_name=C_scaffold_3000017;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 76025 82164 . - . ID=Physo155347;Parent=Physo155347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 76025 76191 . - 0 ID=Physo155347;Parent=Physo155347;rank=14 scaffold_3 . exon 76025 76191 . - . ID=Physo155347.14;Parent=Physo155347;constitutive=1;ensembl_phase=1;rank=14 scaffold_3 . CDS 76247 77394 . - 0 ID=Physo155347;Parent=Physo155347;rank=13 scaffold_3 . exon 76247 77394 . - . ID=Physo155347.13;Parent=Physo155347;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=13 scaffold_3 . CDS 77560 77878 . - 0 ID=Physo155347;Parent=Physo155347;rank=12 scaffold_3 . exon 77560 77878 . - . ID=Physo155347.12;Parent=Physo155347;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=12 scaffold_3 . CDS 77960 78267 . - 0 ID=Physo155347;Parent=Physo155347;rank=11 scaffold_3 . exon 77960 78267 . - . ID=Physo155347.11;Parent=Physo155347;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_3 . CDS 78355 78611 . - 0 ID=Physo155347;Parent=Physo155347;rank=10 scaffold_3 . exon 78355 78611 . - . ID=Physo155347.10;Parent=Physo155347;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_3 . CDS 78771 78863 . - 0 ID=Physo155347;Parent=Physo155347;rank=9 scaffold_3 . exon 78771 78863 . - . ID=Physo155347.9;Parent=Physo155347;constitutive=1;rank=9 scaffold_3 . CDS 79011 79108 . - 0 ID=Physo155347;Parent=Physo155347;rank=8 scaffold_3 . exon 79011 79108 . - . ID=Physo155347.8;Parent=Physo155347;constitutive=1;ensembl_phase=1;rank=8 scaffold_3 . CDS 79298 79410 . - 0 ID=Physo155347;Parent=Physo155347;rank=7 scaffold_3 . exon 79298 79410 . - . ID=Physo155347.7;Parent=Physo155347;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 79459 79651 . - 0 ID=Physo155347;Parent=Physo155347;rank=6 scaffold_3 . exon 79459 79651 . - . ID=Physo155347.6;Parent=Physo155347;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_3 . CDS 79748 79897 . - 0 ID=Physo155347;Parent=Physo155347;rank=5 scaffold_3 . CDS 80429 80735 . - 0 ID=Physo155347;Parent=Physo155347;rank=4 scaffold_3 . CDS 80797 81066 . - 0 ID=Physo155347;Parent=Physo155347;rank=3 scaffold_3 . CDS 81335 81730 . - 0 ID=Physo155347;Parent=Physo155347;rank=2 scaffold_3 . CDS 81799 82164 . - 0 ID=Physo155347;Parent=Physo155347;rank=1 scaffold_3 ensembl protein_coding_gene 83426 84431 . - . ID=Physo127813;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30022;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 83426 84431 . - . ID=Physo127813;Parent=Physo127813;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 83426 84431 . - . ID=Physo127813.1;Parent=Physo127813;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 83493 84332 . - 0 ID=Physo127813;Parent=Physo127813;rank=1 scaffold_3 ensembl protein_coding_gene 85834 87037 . - . ID=Physo127814;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30023;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 85834 87037 . - . ID=Physo127814;Parent=Physo127814;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 85834 86364 . - . ID=Physo127814.2;Parent=Physo127814;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_3 . CDS 86005 86364 . - 0 ID=Physo127814;Parent=Physo127814;rank=2 scaffold_3 . CDS 86441 87037 . - 0 ID=Physo127814;Parent=Physo127814;rank=1 scaffold_3 . exon 86441 87037 . - . ID=Physo127814.1;Parent=Physo127814;constitutive=1;rank=1 scaffold_3 . exon 79748 79897 . - . ID=Physo155347.5;Parent=Physo155347;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_3 . exon 80429 80735 . - . ID=Physo155347.4;Parent=Physo155347;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . exon 80797 81066 . - . ID=Physo155347.3;Parent=Physo155347;constitutive=1;rank=3 scaffold_3 . exon 81335 81730 . - . ID=Physo155347.2;Parent=Physo155347;constitutive=1;rank=2 scaffold_3 . exon 81799 82164 . - . ID=Physo155347.1;Parent=Physo155347;constitutive=1;rank=1 scaffold_3 . repeat_region 91054 91061 . ? . description=dust scaffold_3 . repeat_region 91919 91959 . ? . description=trf scaffold_3 . biological_region 92332 92332 0.999 - . logic_name=eponine scaffold_3 . biological_region 93258 93261 0.999 - . logic_name=eponine scaffold_3 . biological_region 93368 93373 0.999 - . logic_name=eponine scaffold_3 . biological_region 95882 95887 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 93184 94286 . + . ID=Physo108215;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30004;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 93184 94286 . + . ID=Physo108215;Parent=Physo108215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 93184 93365 . + 0 ID=Physo108215;Parent=Physo108215;rank=1 scaffold_3 . exon 93184 93365 . + . ID=Physo108215.1;Parent=Physo108215;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 93474 93739 . + 0 ID=Physo108215;Parent=Physo108215;rank=2 scaffold_3 . exon 93474 93739 . + . ID=Physo108215.2;Parent=Physo108215;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 93847 94286 . + 0 ID=Physo108215;Parent=Physo108215;rank=3 scaffold_3 . exon 93847 94286 . + . ID=Physo108215.3;Parent=Physo108215;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 ensembl protein_coding_gene 92224 92776 . + . ID=Physo127815;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30024;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 92224 92776 . + . ID=Physo127815;Parent=Physo127815;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 92224 92561 . + 0 ID=Physo127815;Parent=Physo127815;rank=1 scaffold_3 . exon 92224 92561 . + . ID=Physo127815.1;Parent=Physo127815;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 92641 92776 . + 0 ID=Physo127815;Parent=Physo127815;rank=2 scaffold_3 . exon 92641 92776 . + . ID=Physo127815.2;Parent=Physo127815;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 ensembl protein_coding_gene 94459 97206 . - . ID=Physo127817;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30026;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 94459 97206 . - . ID=Physo127817;Parent=Physo127817;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 94459 94564 . - . ID=Physo127817.4;Parent=Physo127817;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_3 . CDS 94460 94564 . - 0 ID=Physo127817;Parent=Physo127817;rank=4 scaffold_3 . CDS 94598 96441 . - 0 ID=Physo127817;Parent=Physo127817;rank=3 scaffold_3 . exon 94598 96441 . - . ID=Physo127817.3;Parent=Physo127817;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 96478 97140 . - 0 ID=Physo127817;Parent=Physo127817;rank=2 scaffold_3 . exon 96478 97140 . - . ID=Physo127817.2;Parent=Physo127817;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 97203 97206 . - 0 ID=Physo127817;Parent=Physo127817;rank=1 scaffold_3 . exon 97203 97206 . - . ID=Physo127817.1;Parent=Physo127817;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 97950 98873 . - . ID=Physo127818;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30027;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 97950 98873 . - . ID=Physo127818;Parent=Physo127818;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 97950 98873 . - 0 ID=Physo127818;Parent=Physo127818;rank=1 scaffold_3 . exon 97950 98873 . - . ID=Physo127818.1;Parent=Physo127818;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 101791 103836 . + . ID=Physo127819;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30028;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 101791 103836 . + . ID=Physo127819;Parent=Physo127819;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 101791 102288 . + 0 ID=Physo127819;Parent=Physo127819;rank=1 scaffold_3 . exon 101791 102288 . + . ID=Physo127819.1;Parent=Physo127819;constitutive=1;rank=1 scaffold_3 . CDS 102463 103836 . + 0 ID=Physo127819;Parent=Physo127819;rank=2 scaffold_3 . exon 102463 103836 . + . ID=Physo127819.2;Parent=Physo127819;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 104123 105514 . - . ID=Physo127820;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30029;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 104123 105514 . - . ID=Physo127820;Parent=Physo127820;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 104123 105514 . - 0 ID=Physo127820;Parent=Physo127820;rank=1 scaffold_3 . exon 104123 105514 . - . ID=Physo127820.1;Parent=Physo127820;constitutive=1;rank=1 scaffold_3 . biological_region 118412 118415 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 110023 113009 . - . ID=Physo127821;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30030;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 110023 113009 . - . ID=Physo127821;Parent=Physo127821;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 110023 110227 . - 0 ID=Physo127821;Parent=Physo127821;rank=5 scaffold_3 . exon 110023 110227 . - . ID=Physo127821.5;Parent=Physo127821;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 110719 111442 . - 0 ID=Physo127821;Parent=Physo127821;rank=4 scaffold_3 . exon 110719 111442 . - . ID=Physo127821.4;Parent=Physo127821;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_3 . CDS 111741 112087 . - 0 ID=Physo127821;Parent=Physo127821;rank=3 scaffold_3 . exon 111741 112087 . - . ID=Physo127821.3;Parent=Physo127821;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 112188 112380 . - 0 ID=Physo127821;Parent=Physo127821;rank=2 scaffold_3 . exon 112188 112380 . - . ID=Physo127821.2;Parent=Physo127821;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 112556 113009 . - 0 ID=Physo127821;Parent=Physo127821;rank=1 scaffold_3 . exon 112556 113009 . - . ID=Physo127821.1;Parent=Physo127821;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 117325 120916 . - . ID=Physo127822;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30031;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 117325 120916 . - . ID=Physo127822;Parent=Physo127822;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 117325 117508 . - 0 ID=Physo127822;Parent=Physo127822;rank=7 scaffold_3 . exon 117325 117508 . - . ID=Physo127822.7;Parent=Physo127822;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 117641 118320 . - 0 ID=Physo127822;Parent=Physo127822;rank=6 scaffold_3 . exon 117641 118320 . - . ID=Physo127822.6;Parent=Physo127822;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_3 . CDS 118342 118608 . - 0 ID=Physo127822;Parent=Physo127822;rank=5 scaffold_3 . exon 118342 118608 . - . ID=Physo127822.5;Parent=Physo127822;constitutive=1;rank=5 scaffold_3 . CDS 118684 118866 . - 0 ID=Physo127822;Parent=Physo127822;rank=4 scaffold_3 . exon 118684 118866 . - . ID=Physo127822.4;Parent=Physo127822;constitutive=1;rank=4 scaffold_3 . CDS 119256 119884 . - 0 ID=Physo127822;Parent=Physo127822;rank=3 scaffold_3 . exon 119256 119884 . - . ID=Physo127822.3;Parent=Physo127822;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 119955 120198 . - 0 ID=Physo127822;Parent=Physo127822;rank=2 scaffold_3 . CDS 120566 120916 . - 0 ID=Physo127822;Parent=Physo127822;rank=1 scaffold_3 . repeat_region 128635 128658 . ? . description=dust scaffold_3 . repeat_region 128635 128658 . ? . description=trf scaffold_3 . exon 119955 120198 . - . ID=Physo127822.2;Parent=Physo127822;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . exon 120566 120916 . - . ID=Physo127822.1;Parent=Physo127822;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 129119 131710 . + . ID=Physo127823;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30032;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 129119 131710 . + . ID=Physo127823;Parent=Physo127823;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 129119 129361 . + 0 ID=Physo127823;Parent=Physo127823;rank=1 scaffold_3 . exon 129119 129361 . + . ID=Physo127823.1;Parent=Physo127823;constitutive=1;rank=1 scaffold_3 . CDS 129448 130089 . + 0 ID=Physo127823;Parent=Physo127823;rank=2 scaffold_3 . CDS 130195 130460 . + 0 ID=Physo127823;Parent=Physo127823;rank=3 scaffold_3 . CDS 130481 130918 . + 0 ID=Physo127823;Parent=Physo127823;rank=4 scaffold_3 . CDS 131020 131498 . + 0 ID=Physo127823;Parent=Physo127823;rank=5 scaffold_3 . CDS 131523 131710 . + 0 ID=Physo127823;Parent=Physo127823;rank=6 scaffold_3 . repeat_region 129635 129777 . + . description=(CGA)n scaffold_3 . biological_region 129724 129726 0.999 - . logic_name=eponine scaffold_3 . biological_region 130718 130723 0.999 + . logic_name=eponine scaffold_3 . biological_region 130753 130753 0.999 - . logic_name=eponine scaffold_3 . biological_region 130901 130903 0.999 - . logic_name=eponine scaffold_3 . biological_region 136457 136457 0.999 + . logic_name=eponine scaffold_3 . exon 129448 130089 . + . ID=Physo127823.2;Parent=Physo127823;constitutive=1;rank=2 scaffold_3 . exon 130195 130460 . + . ID=Physo127823.3;Parent=Physo127823;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . exon 130481 130918 . + . ID=Physo127823.4;Parent=Physo127823;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_3 . exon 131020 131498 . + . ID=Physo127823.5;Parent=Physo127823;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_3 . exon 131523 131710 . + . ID=Physo127823.6;Parent=Physo127823;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 ensembl protein_coding_gene 132648 133040 . - . ID=Physo127824;biotype=protein_coding;description=PsAvh22 [Source:UniProtKB/TrEMBL%3BAcc:E0W4P1];external_name=estExt_fgenesh1_pg.C_30033;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 132648 133040 . - . ID=Physo127824;Parent=Physo127824;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 132648 133040 . - 0 ID=Physo127824;Parent=Physo127824;rank=1 scaffold_3 . exon 132648 133040 . - . ID=Physo127824.1;Parent=Physo127824;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 135230 135736 . - . ID=Physo127825;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30034;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 135230 135736 . - . ID=Physo127825;Parent=Physo127825;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 135230 135736 . - 0 ID=Physo127825;Parent=Physo127825;rank=1 scaffold_3 . exon 135230 135736 . - . ID=Physo127825.1;Parent=Physo127825;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 136114 136725 . + . ID=Physo127826;biotype=protein_coding;description=Elicitin-like protein SOL13F [Source:UniProtKB/TrEMBL%3BAcc:Q2N067];external_name=estExt_fgenesh1_pg.C_30035;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 136114 136725 . + . ID=Physo127826;Parent=Physo127826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 136114 136725 . + 0 ID=Physo127826;Parent=Physo127826;rank=1 scaffold_3 . exon 136114 136725 . + . ID=Physo127826.1;Parent=Physo127826;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 136818 137864 . - . ID=Physo127827;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30036;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 136818 137864 . - . ID=Physo127827;Parent=Physo127827;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 136818 136828 . - 0 ID=Physo127827;Parent=Physo127827;rank=3 scaffold_3 . exon 136818 136828 . - . ID=Physo127827.3;Parent=Physo127827;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 136886 137095 . - 0 ID=Physo127827;Parent=Physo127827;rank=2 scaffold_3 . exon 136886 137095 . - . ID=Physo127827.2;Parent=Physo127827;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 137411 137864 . - 0 ID=Physo127827;Parent=Physo127827;rank=1 scaffold_3 . exon 137411 137864 . - . ID=Physo127827.1;Parent=Physo127827;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 138068 140451 . - . ID=Physo127828;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30037;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 138068 140451 . - . ID=Physo127828;Parent=Physo127828;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 138068 139152 . - 0 ID=Physo127828;Parent=Physo127828;rank=3 scaffold_3 . exon 138068 139152 . - . ID=Physo127828.3;Parent=Physo127828;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 139744 139772 . - 0 ID=Physo127828;Parent=Physo127828;rank=2 scaffold_3 . CDS 139796 140451 . - 0 ID=Physo127828;Parent=Physo127828;rank=1 scaffold_3 . repeat_region 143515 145962 . ? . description=dust scaffold_3 . exon 139744 139772 . - . ID=Physo127828.2;Parent=Physo127828;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . exon 139796 140451 . - . ID=Physo127828.1;Parent=Physo127828;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 140862 141509 . - . ID=Physo127829;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30038;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 140862 141509 . - . ID=Physo127829;Parent=Physo127829;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 140862 141509 . - 0 ID=Physo127829;Parent=Physo127829;rank=1 scaffold_3 . exon 140862 141509 . - . ID=Physo127829.1;Parent=Physo127829;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 146313 152790 . - . ID=Physo127830;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30039;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 146313 152790 . - . ID=Physo127830;Parent=Physo127830;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 146313 146361 . - 0 ID=Physo127830;Parent=Physo127830;rank=11 scaffold_3 . exon 146313 146361 . - . ID=Physo127830.11;Parent=Physo127830;constitutive=1;ensembl_phase=2;rank=11 scaffold_3 . CDS 146390 146801 . - 0 ID=Physo127830;Parent=Physo127830;rank=10 scaffold_3 . exon 146390 146801 . - . ID=Physo127830.10;Parent=Physo127830;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_3 . CDS 146965 147406 . - 0 ID=Physo127830;Parent=Physo127830;rank=9 scaffold_3 . exon 146965 147406 . - . ID=Physo127830.9;Parent=Physo127830;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_3 . CDS 147439 148038 . - 0 ID=Physo127830;Parent=Physo127830;rank=8 scaffold_3 . exon 147439 148038 . - . ID=Physo127830.8;Parent=Physo127830;constitutive=1;rank=8 scaffold_3 . CDS 148107 148681 . - 0 ID=Physo127830;Parent=Physo127830;rank=7 scaffold_3 . exon 148107 148681 . - . ID=Physo127830.7;Parent=Physo127830;constitutive=1;ensembl_phase=1;rank=7 scaffold_3 . CDS 148781 149133 . - 0 ID=Physo127830;Parent=Physo127830;rank=6 scaffold_3 . exon 148781 149133 . - . ID=Physo127830.6;Parent=Physo127830;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_3 . CDS 149195 149399 . - 0 ID=Physo127830;Parent=Physo127830;rank=5 scaffold_3 . exon 149195 149399 . - . ID=Physo127830.5;Parent=Physo127830;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_3 . CDS 149429 149858 . - 0 ID=Physo127830;Parent=Physo127830;rank=4 scaffold_3 . CDS 149915 150638 . - 0 ID=Physo127830;Parent=Physo127830;rank=3 scaffold_3 . CDS 151128 152424 . - 0 ID=Physo127830;Parent=Physo127830;rank=2 scaffold_3 . CDS 152445 152790 . - 0 ID=Physo127830;Parent=Physo127830;rank=1 scaffold_3 . biological_region 149513 149520 0.999 + . logic_name=eponine scaffold_3 . biological_region 149676 149681 0.999 - . logic_name=eponine scaffold_3 . biological_region 149951 149956 0.999 + . logic_name=eponine scaffold_3 . biological_region 150056 150057 0.999 - . logic_name=eponine scaffold_3 . biological_region 151803 151803 0.999 + . logic_name=eponine scaffold_3 . biological_region 151903 151905 0.999 - . logic_name=eponine scaffold_3 . repeat_region 152333 152392 . ? . description=trf scaffold_3 . biological_region 152580 152584 0.999 + . logic_name=eponine scaffold_3 . biological_region 152628 152633 0.999 - . logic_name=eponine scaffold_3 . biological_region 152635 152639 0.999 + . logic_name=eponine scaffold_3 . biological_region 152643 152647 0.999 - . logic_name=eponine scaffold_3 . repeat_region 152658 152713 . ? . description=trf scaffold_3 . biological_region 152663 152666 0.999 - . logic_name=eponine scaffold_3 . biological_region 152691 152698 0.999 - . logic_name=eponine scaffold_3 . biological_region 156522 156523 0.999 + . logic_name=eponine scaffold_3 . biological_region 156529 156532 0.999 + . logic_name=eponine scaffold_3 . repeat_region 156950 156976 . ? . description=trf scaffold_3 . biological_region 156955 156960 0.999 + . logic_name=eponine scaffold_3 . repeat_region 159000 159033 . ? . description=trf scaffold_3 . exon 149429 149858 . - . ID=Physo127830.4;Parent=Physo127830;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . exon 149915 150638 . - . ID=Physo127830.3;Parent=Physo127830;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . exon 151128 152424 . - . ID=Physo127830.2;Parent=Physo127830;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . exon 152445 152790 . - . ID=Physo127830.1;Parent=Physo127830;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 156666 158258 . + . ID=Physo127831;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30040;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 156666 158258 . + . ID=Physo127831;Parent=Physo127831;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 156666 158258 . + 0 ID=Physo127831;Parent=Physo127831;rank=1 scaffold_3 . exon 156666 158258 . + . ID=Physo127831.1;Parent=Physo127831;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 158624 160125 . + . ID=Physo127832;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30041;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 158624 160125 . + . ID=Physo127832;Parent=Physo127832;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 158624 159089 . + 0 ID=Physo127832;Parent=Physo127832;rank=1 scaffold_3 . exon 158624 159089 . + . ID=Physo127832.1;Parent=Physo127832;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 159302 160125 . + 0 ID=Physo127832;Parent=Physo127832;rank=2 scaffold_3 . exon 159302 160125 . + . ID=Physo127832.2;Parent=Physo127832;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 162079 163326 . - . ID=Physo127833;biotype=protein_coding;description=Elicitin-like protein SOL13A [Source:UniProtKB/TrEMBL%3BAcc:Q2N071];external_name=estExt_fgenesh1_pg.C_30042;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 162079 163326 . - . ID=Physo127833;Parent=Physo127833;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 162079 163326 . - 0 ID=Physo127833;Parent=Physo127833;rank=1 scaffold_3 . exon 162079 163326 . - . ID=Physo127833.1;Parent=Physo127833;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 165267 165807 . - . ID=Physo127835;biotype=protein_coding;description=Elicitin-like protein SOL13E [Source:UniProtKB/TrEMBL%3BAcc:Q2N068];external_name=estExt_fgenesh1_pg.C_30044;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 165267 165807 . - . ID=Physo127835;Parent=Physo127835;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 165267 165807 . - . ID=Physo127835.1;Parent=Physo127835;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 165323 165781 . - 0 ID=Physo127835;Parent=Physo127835;rank=1 scaffold_3 ensembl protein_coding_gene 167454 168218 . - . ID=Physo127836;biotype=protein_coding;description=Elicitin-like protein SOL13D [Source:UniProtKB/TrEMBL%3BAcc:Q2N069];external_name=estExt_fgenesh1_pg.C_30045;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 167454 168218 . - . ID=Physo127836;Parent=Physo127836;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 167454 168218 . - 0 ID=Physo127836;Parent=Physo127836;rank=1 scaffold_3 . exon 167454 168218 . - . ID=Physo127836.1;Parent=Physo127836;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 168527 171271 . - . ID=Physo127837;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30046;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 168527 171271 . - . ID=Physo127837;Parent=Physo127837;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 168527 171271 . - 0 ID=Physo127837;Parent=Physo127837;rank=1 scaffold_3 . exon 168527 171271 . - . ID=Physo127837.1;Parent=Physo127837;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 164050 164715 . - . ID=Physo155353;biotype=protein_coding;external_name=C_scaffold_3000023;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 164050 164715 . - . ID=Physo155353;Parent=Physo155353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 164050 164284 . - 0 ID=Physo155353;Parent=Physo155353;rank=2 scaffold_3 . exon 164050 164284 . - . ID=Physo155353.2;Parent=Physo155353;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 164387 164715 . - 0 ID=Physo155353;Parent=Physo155353;rank=1 scaffold_3 . exon 164387 164715 . - . ID=Physo155353.1;Parent=Physo155353;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . biological_region 170154 170154 0.999 + . logic_name=eponine scaffold_3 . biological_region 170178 170183 0.999 + . logic_name=eponine scaffold_3 . biological_region 170955 170957 0.999 + . logic_name=eponine scaffold_3 . biological_region 171343 171344 0.999 + . logic_name=eponine scaffold_3 . repeat_region 171348 171401 . ? . description=dust scaffold_3 . biological_region 171412 171412 0.999 - . logic_name=eponine scaffold_3 . repeat_region 174981 174997 . ? . description=dust scaffold_3 . repeat_region 178295 178303 . ? . description=dust scaffold_3 ensembl protein_coding_gene 172400 173152 . + . ID=Physo127838;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30047;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 172400 173152 . + . ID=Physo127838;Parent=Physo127838;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 172400 172863 . + 0 ID=Physo127838;Parent=Physo127838;rank=1 scaffold_3 . exon 172400 172863 . + . ID=Physo127838.1;Parent=Physo127838;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 173065 173152 . + 0 ID=Physo127838;Parent=Physo127838;rank=2 scaffold_3 . exon 173065 173152 . + . ID=Physo127838.2;Parent=Physo127838;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 ensembl protein_coding_gene 175525 176079 . + . ID=Physo127839;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30048;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 175525 176079 . + . ID=Physo127839;Parent=Physo127839;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 175525 176079 . + 0 ID=Physo127839;Parent=Physo127839;rank=1 scaffold_3 . exon 175525 176079 . + . ID=Physo127839.1;Parent=Physo127839;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 176560 178101 . + . ID=Physo127840;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30049;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 176560 178101 . + . ID=Physo127840;Parent=Physo127840;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 176560 177481 . + 0 ID=Physo127840;Parent=Physo127840;rank=1 scaffold_3 . exon 176560 177481 . + . ID=Physo127840.1;Parent=Physo127840;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 177551 178101 . + 0 ID=Physo127840;Parent=Physo127840;rank=2 scaffold_3 . exon 177551 178101 . + . ID=Physo127840.2;Parent=Physo127840;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 181047 182667 . + . ID=Physo127842;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30051;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 181047 182667 . + . ID=Physo127842;Parent=Physo127842;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 181047 181323 . + 0 ID=Physo127842;Parent=Physo127842;rank=1 scaffold_3 . exon 181047 181323 . + . ID=Physo127842.1;Parent=Physo127842;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 181412 182068 . + 0 ID=Physo127842;Parent=Physo127842;rank=2 scaffold_3 . exon 181412 182068 . + . ID=Physo127842.2;Parent=Physo127842;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 182138 182667 . + 0 ID=Physo127842;Parent=Physo127842;rank=3 scaffold_3 . exon 182138 182667 . + . ID=Physo127842.3;Parent=Physo127842;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 ensembl protein_coding_gene 185940 187190 . + . ID=Physo127843;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30052;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 185940 187190 . + . ID=Physo127843;Parent=Physo127843;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 185940 187190 . + 0 ID=Physo127843;Parent=Physo127843;rank=1 scaffold_3 . exon 185940 187190 . + . ID=Physo127843.1;Parent=Physo127843;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 187445 188209 . - . ID=Physo127844;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30053;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 187445 188209 . - . ID=Physo127844;Parent=Physo127844;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 187445 188209 . - . ID=Physo127844.1;Parent=Physo127844;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 187446 188207 . - 0 ID=Physo127844;Parent=Physo127844;rank=1 scaffold_3 ensembl protein_coding_gene 188362 188787 . - . ID=Physo127845;biotype=protein_coding;description=Elicitin-like protein SOL13C [Source:UniProtKB/TrEMBL%3BAcc:Q2N070];external_name=estExt_fgenesh1_pg.C_30054;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 188362 188787 . - . ID=Physo127845;Parent=Physo127845;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 188362 188787 . - 0 ID=Physo127845;Parent=Physo127845;rank=1 scaffold_3 . exon 188362 188787 . - . ID=Physo127845.1;Parent=Physo127845;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 188855 190462 . - . ID=Physo127846;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30055;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 188855 190462 . - . ID=Physo127846;Parent=Physo127846;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 188855 189108 . - . ID=Physo127846.2;Parent=Physo127846;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_3 . CDS 189081 189108 . - 0 ID=Physo127846;Parent=Physo127846;rank=2 scaffold_3 . CDS 189204 190462 . - 0 ID=Physo127846;Parent=Physo127846;rank=1 scaffold_3 . biological_region 189163 189164 0.999 + . logic_name=eponine scaffold_3 . biological_region 190346 190350 0.999 + . logic_name=eponine scaffold_3 . repeat_region 191038 191087 . ? . description=dust scaffold_3 . biological_region 191892 191897 0.999 + . logic_name=eponine scaffold_3 . biological_region 191922 191925 0.999 - . logic_name=eponine scaffold_3 . biological_region 191946 191951 0.999 - . logic_name=eponine scaffold_3 . repeat_region 194122 194133 . ? . description=dust scaffold_3 . repeat_region 195804 195907 . ? . description=trf scaffold_3 . repeat_region 196342 200481 . ? . description=dust scaffold_3 . exon 189204 190462 . - . ID=Physo127846.1;Parent=Physo127846;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 191534 193262 . - . ID=Physo127847;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30056;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 191534 193262 . - . ID=Physo127847;Parent=Physo127847;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 191534 192890 . - . ID=Physo127847.2;Parent=Physo127847;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_3 . CDS 191698 192890 . - 0 ID=Physo127847;Parent=Physo127847;rank=2 scaffold_3 . CDS 192967 193213 . - 0 ID=Physo127847;Parent=Physo127847;rank=1 scaffold_3 . exon 192967 193262 . - . ID=Physo127847.1;Parent=Physo127847;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 194267 195713 . - . ID=Physo127848;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30057;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 194267 195713 . - . ID=Physo127848;Parent=Physo127848;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 194267 195713 . - . ID=Physo127848.1;Parent=Physo127848;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 . CDS 194391 195713 . - 0 ID=Physo127848;Parent=Physo127848;rank=1 scaffold_3 . repeat_region 200957 201675 . - . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 201921 203285 . - . description=GypsyPi-1c_I-int scaffold_3 ensembl protein_coding_gene 201511 205827 . - . ID=Physo127849;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30058;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 201511 205827 . - . ID=Physo127849;Parent=Physo127849;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 201511 202372 . - 0 ID=Physo127849;Parent=Physo127849;rank=8 scaffold_3 . exon 201511 202372 . - . ID=Physo127849.8;Parent=Physo127849;constitutive=1;ensembl_phase=2;rank=8 scaffold_3 . CDS 202498 202749 . - 0 ID=Physo127849;Parent=Physo127849;rank=7 scaffold_3 . exon 202498 202749 . - . ID=Physo127849.7;Parent=Physo127849;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_3 . CDS 202799 203115 . - 0 ID=Physo127849;Parent=Physo127849;rank=6 scaffold_3 . exon 202799 203115 . - . ID=Physo127849.6;Parent=Physo127849;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_3 . CDS 203145 203684 . - 0 ID=Physo127849;Parent=Physo127849;rank=5 scaffold_3 . exon 203145 203684 . - . ID=Physo127849.5;Parent=Physo127849;constitutive=1;rank=5 scaffold_3 . CDS 203711 204163 . - 0 ID=Physo127849;Parent=Physo127849;rank=4 scaffold_3 . exon 203711 204163 . - . ID=Physo127849.4;Parent=Physo127849;constitutive=1;rank=4 scaffold_3 . CDS 204328 204661 . - 0 ID=Physo127849;Parent=Physo127849;rank=3 scaffold_3 . exon 204328 204661 . - . ID=Physo127849.3;Parent=Physo127849;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 204799 205186 . - 0 ID=Physo127849;Parent=Physo127849;rank=2 scaffold_3 . exon 204799 205186 . - . ID=Physo127849.2;Parent=Physo127849;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 205206 205827 . - 0 ID=Physo127849;Parent=Physo127849;rank=1 scaffold_3 . exon 205206 205827 . - . ID=Physo127849.1;Parent=Physo127849;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 206202 207525 . + . ID=Physo127850;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30059;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 206202 207525 . + . ID=Physo127850;Parent=Physo127850;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 206202 207173 . + . ID=Physo127850.1;Parent=Physo127850;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 206588 207173 . + 0 ID=Physo127850;Parent=Physo127850;rank=1 scaffold_3 . CDS 207242 207525 . + 0 ID=Physo127850;Parent=Physo127850;rank=2 scaffold_3 . exon 207242 207525 . + . ID=Physo127850.2;Parent=Physo127850;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 207880 209587 . - . ID=Physo127851;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30060;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 207880 209587 . - . ID=Physo127851;Parent=Physo127851;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 207880 209587 . - . ID=Physo127851.1;Parent=Physo127851;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 207974 209521 . - 0 ID=Physo127851;Parent=Physo127851;rank=1 scaffold_3 . repeat_region 209869 209876 . ? . description=dust scaffold_3 . biological_region 211075 211075 0.999 + . logic_name=eponine scaffold_3 . biological_region 213063 213065 0.999 - . logic_name=eponine scaffold_3 . repeat_region 213724 213731 . ? . description=dust scaffold_3 . biological_region 214305 214307 0.999 - . logic_name=eponine scaffold_3 . biological_region 214879 214881 0.999 + . logic_name=eponine scaffold_3 . biological_region 215226 215227 0.999 - . logic_name=eponine scaffold_3 . repeat_region 216992 217055 . ? . description=trf scaffold_3 . biological_region 217280 217282 0.999 + . logic_name=eponine scaffold_3 . biological_region 217908 217911 0.999 - . logic_name=eponine scaffold_3 . repeat_region 218630 218640 . ? . description=dust scaffold_3 . repeat_region 218710 218721 . ? . description=dust scaffold_3 ensembl protein_coding_gene 210175 213239 . + . ID=Physo127852;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30061;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 210175 213239 . + . ID=Physo127852;Parent=Physo127852;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 210175 210386 . + 0 ID=Physo127852;Parent=Physo127852;rank=1 scaffold_3 . exon 210175 210386 . + . ID=Physo127852.1;Parent=Physo127852;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 210412 211299 . + 0 ID=Physo127852;Parent=Physo127852;rank=2 scaffold_3 . exon 210412 211299 . + . ID=Physo127852.2;Parent=Physo127852;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 211643 213239 . + 0 ID=Physo127852;Parent=Physo127852;rank=3 scaffold_3 . exon 211643 213239 . + . ID=Physo127852.3;Parent=Physo127852;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 ensembl protein_coding_gene 214224 218546 . + . ID=Physo127853;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30062;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 214224 218546 . + . ID=Physo127853;Parent=Physo127853;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 214224 218546 . + . ID=Physo127853.1;Parent=Physo127853;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 214245 216605 . + 0 ID=Physo127853;Parent=Physo127853;rank=1 scaffold_3 ensembl protein_coding_gene 218856 219665 . - . ID=Physo127854;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30063;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 218856 219665 . - . ID=Physo127854;Parent=Physo127854;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 218856 219665 . - 0 ID=Physo127854;Parent=Physo127854;rank=1 scaffold_3 . exon 218856 219665 . - . ID=Physo127854.1;Parent=Physo127854;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 220600 221906 . - . ID=Physo127855;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30064;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 220600 221906 . - . ID=Physo127855;Parent=Physo127855;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 220600 220910 . - 0 ID=Physo127855;Parent=Physo127855;rank=3 scaffold_3 . exon 220600 220910 . - . ID=Physo127855.3;Parent=Physo127855;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 220931 220938 . - 0 ID=Physo127855;Parent=Physo127855;rank=2 scaffold_3 . exon 220931 220938 . - . ID=Physo127855.2;Parent=Physo127855;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 221236 221906 . - 0 ID=Physo127855;Parent=Physo127855;rank=1 scaffold_3 . exon 221236 221906 . - . ID=Physo127855.1;Parent=Physo127855;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 223245 223900 . + . ID=Physo127856;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30065;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 223245 223900 . + . ID=Physo127856;Parent=Physo127856;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 223245 223583 . + 0 ID=Physo127856;Parent=Physo127856;rank=1 scaffold_3 . exon 223245 223583 . + . ID=Physo127856.1;Parent=Physo127856;constitutive=1;rank=1 scaffold_3 . CDS 223625 223900 . + 0 ID=Physo127856;Parent=Physo127856;rank=2 scaffold_3 . exon 223625 223900 . + . ID=Physo127856.2;Parent=Physo127856;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 226393 230140 . + . ID=Physo127857;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30066;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 226393 230140 . + . ID=Physo127857;Parent=Physo127857;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 226393 229313 . + 0 ID=Physo127857;Parent=Physo127857;rank=1 scaffold_3 . exon 226393 229313 . + . ID=Physo127857.1;Parent=Physo127857;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 229355 229498 . + 0 ID=Physo127857;Parent=Physo127857;rank=2 scaffold_3 . CDS 229840 230140 . + 0 ID=Physo127857;Parent=Physo127857;rank=3 scaffold_3 . biological_region 229157 229159 0.999 - . logic_name=eponine scaffold_3 . biological_region 229215 229217 0.999 + . logic_name=eponine scaffold_3 . repeat_region 230832 235018 . ? . description=dust scaffold_3 . biological_region 236483 236487 0.999 - . logic_name=eponine scaffold_3 . repeat_region 236912 236953 . ? . description=trf scaffold_3 . repeat_region 237507 237534 . ? . description=trf scaffold_3 . repeat_region 237507 237539 . ? . description=dust scaffold_3 . biological_region 238757 238759 0.999 + . logic_name=eponine scaffold_3 . exon 229355 229498 . + . ID=Physo127857.2;Parent=Physo127857;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . exon 229840 230140 . + . ID=Physo127857.3;Parent=Physo127857;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 ensembl protein_coding_gene 230302 230705 . - . ID=Physo127858;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30067;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 230302 230705 . - . ID=Physo127858;Parent=Physo127858;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 230302 230705 . - . ID=Physo127858.1;Parent=Physo127858;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 230374 230703 . - 0 ID=Physo127858;Parent=Physo127858;rank=1 scaffold_3 ensembl protein_coding_gene 239556 244218 . + . ID=Physo127859;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30068;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 239556 244218 . + . ID=Physo127859;Parent=Physo127859;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 239556 244165 . + . ID=Physo127859.1;Parent=Physo127859;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 239872 244164 . + 0 ID=Physo127859;Parent=Physo127859;rank=1 scaffold_3 . exon 244195 244218 . + . ID=Physo127859.2;Parent=Physo127859;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_3 ensembl protein_coding_gene 244690 246246 . - . ID=Physo127860;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30069;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 244690 246246 . - . ID=Physo127860;Parent=Physo127860;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 244690 246246 . - 0 ID=Physo127860;Parent=Physo127860;rank=1 scaffold_3 . exon 244690 246246 . - . ID=Physo127860.1;Parent=Physo127860;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 246445 247823 . - . ID=Physo127861;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30070;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 246445 247823 . - . ID=Physo127861;Parent=Physo127861;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 246445 246830 . - 0 ID=Physo127861;Parent=Physo127861;rank=2 scaffold_3 . exon 246445 246830 . - . ID=Physo127861.2;Parent=Physo127861;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 246902 247823 . - 0 ID=Physo127861;Parent=Physo127861;rank=1 scaffold_3 . exon 246902 247823 . - . ID=Physo127861.1;Parent=Physo127861;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 248343 252401 . + . ID=Physo127862;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30071;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 248343 252401 . + . ID=Physo127862;Parent=Physo127862;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 248343 252401 . + 0 ID=Physo127862;Parent=Physo127862;rank=1 scaffold_3 . exon 248343 252401 . + . ID=Physo127862.1;Parent=Physo127862;constitutive=1;rank=1 scaffold_3 . biological_region 253437 253439 0.999 + . logic_name=eponine scaffold_3 . biological_region 253454 253459 0.999 + . logic_name=eponine scaffold_3 . biological_region 253531 253537 0.999 - . logic_name=eponine scaffold_3 . repeat_region 253807 253862 . ? . description=dust scaffold_3 . repeat_region 254007 254014 . ? . description=dust scaffold_3 . biological_region 254050 254053 0.999 + . logic_name=eponine scaffold_3 . biological_region 254121 254129 0.999 - . logic_name=eponine scaffold_3 . repeat_region 254433 254443 . ? . description=dust scaffold_3 . repeat_region 254617 254654 . ? . description=trf scaffold_3 . repeat_region 255853 255866 . ? . description=dust scaffold_3 . repeat_region 256919 256927 . ? . description=dust scaffold_3 ensembl protein_coding_gene 252572 254102 . - . ID=Physo127863;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30072;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 252572 254102 . - . ID=Physo127863;Parent=Physo127863;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 252572 253924 . - 0 ID=Physo127863;Parent=Physo127863;rank=1 scaffold_3 . exon 252572 254102 . - . ID=Physo127863.1;Parent=Physo127863;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . repeat_region 261758 264138 . + . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 264357 264635 . + . description=GypsyPi-1c_I-int scaffold_3 ensembl protein_coding_gene 261645 264399 . + . ID=Physo127864;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30073;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 261645 264399 . + . ID=Physo127864;Parent=Physo127864;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 261645 264352 . + 0 ID=Physo127864;Parent=Physo127864;rank=1 scaffold_3 . exon 261645 264352 . + . ID=Physo127864.1;Parent=Physo127864;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 264393 264399 . + 0 ID=Physo127864;Parent=Physo127864;rank=2 scaffold_3 . exon 264393 264399 . + . ID=Physo127864.2;Parent=Physo127864;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . repeat_region 274007 274023 . ? . description=dust scaffold_3 . repeat_region 274414 274435 . ? . description=trf scaffold_3 . repeat_region 274414 274453 . ? . description=dust scaffold_3 . biological_region 274628 274631 0.999 + . logic_name=eponine scaffold_3 . biological_region 274668 274671 0.999 + . logic_name=eponine scaffold_3 . biological_region 274838 274843 0.999 - . logic_name=eponine scaffold_3 . repeat_region 274965 274988 . ? . description=trf scaffold_3 . repeat_region 275092 275131 . ? . description=trf scaffold_3 . biological_region 275292 275296 0.999 - . logic_name=eponine scaffold_3 . biological_region 276351 276357 0.999 + . logic_name=eponine scaffold_3 . repeat_region 278565 278572 . ? . description=dust scaffold_3 ensembl protein_coding_gene 276909 277427 . - . ID=Physo108216;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30005;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 276909 277427 . - . ID=Physo108216;Parent=Physo108216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 276909 277427 . - 0 ID=Physo108216;Parent=Physo108216;rank=1 scaffold_3 . exon 276909 277427 . - . ID=Physo108216.1;Parent=Physo108216;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 269524 270525 . - . ID=Physo110826;biotype=protein_coding;external_name=estExt_Genewise1.C_30356;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 269524 270525 . - . ID=Physo110826;Parent=Physo110826;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 269524 270498 . - 0 ID=Physo110826;Parent=Physo110826;rank=1 scaffold_3 . exon 269524 270525 . - . ID=Physo110826.1;Parent=Physo110826;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 270806 271219 . - . ID=Physo127866;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30075;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 270806 271219 . - . ID=Physo127866;Parent=Physo127866;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 270806 271219 . - 0 ID=Physo127866;Parent=Physo127866;rank=1 scaffold_3 . exon 270806 271219 . - . ID=Physo127866.1;Parent=Physo127866;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 272673 273819 . - . ID=Physo127867;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30076;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 272673 273819 . - . ID=Physo127867;Parent=Physo127867;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 272673 273637 . - 0 ID=Physo127867;Parent=Physo127867;rank=2 scaffold_3 . exon 272673 273637 . - . ID=Physo127867.2;Parent=Physo127867;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 273690 273819 . - 0 ID=Physo127867;Parent=Physo127867;rank=1 scaffold_3 . exon 273690 273819 . - . ID=Physo127867.1;Parent=Physo127867;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 274454 276724 . + . ID=Physo127868;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30077;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 274454 276724 . + . ID=Physo127868;Parent=Physo127868;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 274454 276724 . + 0 ID=Physo127868;Parent=Physo127868;rank=1 scaffold_3 . exon 274454 276724 . + . ID=Physo127868.1;Parent=Physo127868;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 282701 286927 . + . ID=Physo108217;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30006;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 282701 286927 . + . ID=Physo108217;Parent=Physo108217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 282701 285232 . + 0 ID=Physo108217;Parent=Physo108217;rank=1 scaffold_3 . exon 282701 285232 . + . ID=Physo108217.1;Parent=Physo108217;constitutive=1;rank=1 scaffold_3 . CDS 286883 286927 . + 0 ID=Physo108217;Parent=Physo108217;rank=2 scaffold_3 . exon 286883 286927 . + . ID=Physo108217.2;Parent=Physo108217;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 279415 281992 . + . ID=Physo127870;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30079;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 279415 281992 . + . ID=Physo127870;Parent=Physo127870;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 279415 279705 . + 0 ID=Physo127870;Parent=Physo127870;rank=1 scaffold_3 . exon 279415 279705 . + . ID=Physo127870.1;Parent=Physo127870;constitutive=1;rank=1 scaffold_3 . CDS 279802 280289 . + 0 ID=Physo127870;Parent=Physo127870;rank=2 scaffold_3 . exon 279802 280289 . + . ID=Physo127870.2;Parent=Physo127870;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 280381 281992 . + 0 ID=Physo127870;Parent=Physo127870;rank=3 scaffold_3 . exon 280381 281992 . + . ID=Physo127870.3;Parent=Physo127870;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 ensembl protein_coding_gene 287595 288046 . - . ID=Physo127872;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30081;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 287595 288046 . - . ID=Physo127872;Parent=Physo127872;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 287595 287748 . - . ID=Physo127872.3;Parent=Physo127872;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_3 . CDS 287661 287748 . - 0 ID=Physo127872;Parent=Physo127872;rank=2 scaffold_3 . CDS 287777 287820 . - 0 ID=Physo127872;Parent=Physo127872;rank=1 scaffold_3 . exon 287777 287834 . - . ID=Physo127872.2;Parent=Physo127872;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=2 scaffold_3 . exon 287916 288046 . - . ID=Physo127872.1;Parent=Physo127872;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . repeat_region 289315 289322 . ? . description=dust scaffold_3 . repeat_region 293027 293035 . ? . description=dust scaffold_3 . biological_region 293478 293481 0.999 - . logic_name=eponine scaffold_3 . repeat_region 293808 293817 . ? . description=dust scaffold_3 . repeat_region 294627 294701 . ? . description=trf scaffold_3 . repeat_region 296495 301308 . + . description=GypsyPi-1c_I-int scaffold_3 . biological_region 297504 297506 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 296345 301849 . + . ID=Physo127873;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30082;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 296345 301849 . + . ID=Physo127873;Parent=Physo127873;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 296345 296558 . + 0 ID=Physo127873;Parent=Physo127873;rank=1 scaffold_3 . exon 296345 296558 . + . ID=Physo127873.1;Parent=Physo127873;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 296641 297132 . + 0 ID=Physo127873;Parent=Physo127873;rank=2 scaffold_3 . exon 296641 297132 . + . ID=Physo127873.2;Parent=Physo127873;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 297408 297954 . + 0 ID=Physo127873;Parent=Physo127873;rank=3 scaffold_3 . exon 297408 297954 . + . ID=Physo127873.3;Parent=Physo127873;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . CDS 298114 299514 . + 0 ID=Physo127873;Parent=Physo127873;rank=4 scaffold_3 . exon 298114 299514 . + . ID=Physo127873.4;Parent=Physo127873;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_3 . CDS 299614 299766 . + 0 ID=Physo127873;Parent=Physo127873;rank=5 scaffold_3 . CDS 299862 300510 . + 0 ID=Physo127873;Parent=Physo127873;rank=6 scaffold_3 . CDS 300634 300910 . + 0 ID=Physo127873;Parent=Physo127873;rank=7 scaffold_3 . CDS 301154 301335 . + 0 ID=Physo127873;Parent=Physo127873;rank=8 scaffold_3 . CDS 301538 301849 . + 0 ID=Physo127873;Parent=Physo127873;rank=9 scaffold_3 . exon 299614 299766 . + . ID=Physo127873.5;Parent=Physo127873;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_3 . exon 299862 300510 . + . ID=Physo127873.6;Parent=Physo127873;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 . exon 300634 300910 . + . ID=Physo127873.7;Parent=Physo127873;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_3 . exon 301154 301335 . + . ID=Physo127873.8;Parent=Physo127873;constitutive=1;ensembl_phase=1;rank=8 scaffold_3 . exon 301538 301849 . + . ID=Physo127873.9;Parent=Physo127873;constitutive=1;rank=9 scaffold_3 ensembl protein_coding_gene 302661 303366 . - . ID=Physo127874;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30083;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 302661 303366 . - . ID=Physo127874;Parent=Physo127874;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 302661 303183 . - 0 ID=Physo127874;Parent=Physo127874;rank=2 scaffold_3 . exon 302661 303183 . - . ID=Physo127874.2;Parent=Physo127874;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 303356 303366 . - 0 ID=Physo127874;Parent=Physo127874;rank=1 scaffold_3 . exon 303356 303366 . - . ID=Physo127874.1;Parent=Physo127874;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . repeat_region 311831 311862 . ? . description=trf scaffold_3 . repeat_region 313160 313439 . + . description=GypsyPi-1c_LTR scaffold_3 . repeat_region 313440 317022 . + . description=GypsyPi-1c_I-int scaffold_3 . biological_region 313684 313685 0.999 + . logic_name=eponine scaffold_3 . biological_region 313942 313945 0.999 + . logic_name=eponine scaffold_3 . biological_region 313960 313963 0.999 - . logic_name=eponine scaffold_3 . repeat_region 315281 315443 . ? . description=trf scaffold_3 . repeat_region 315422 315522 . ? . description=trf scaffold_3 . repeat_region 315472 315554 . ? . description=trf scaffold_3 . biological_region 316454 316456 0.999 - . logic_name=eponine scaffold_3 . repeat_region 317024 323994 . ? . description=dust scaffold_3 ensembl protein_coding_gene 308767 311144 . + . ID=Physo127875;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30084;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 308767 311144 . + . ID=Physo127875;Parent=Physo127875;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 308767 309226 . + 0 ID=Physo127875;Parent=Physo127875;rank=1 scaffold_3 . exon 308767 309226 . + . ID=Physo127875.1;Parent=Physo127875;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 309477 309906 . + 0 ID=Physo127875;Parent=Physo127875;rank=2 scaffold_3 . exon 309477 309906 . + . ID=Physo127875.2;Parent=Physo127875;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 310220 311144 . + 0 ID=Physo127875;Parent=Physo127875;rank=3 scaffold_3 . exon 310220 311144 . + . ID=Physo127875.3;Parent=Physo127875;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 ensembl protein_coding_gene 311334 312462 . - . ID=Physo127876;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30085;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 311334 312462 . - . ID=Physo127876;Parent=Physo127876;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 311334 311402 . - 0 ID=Physo127876;Parent=Physo127876;rank=2 scaffold_3 . exon 311334 311402 . - . ID=Physo127876.2;Parent=Physo127876;constitutive=1;rank=2 scaffold_3 . CDS 311488 312462 . - 0 ID=Physo127876;Parent=Physo127876;rank=1 scaffold_3 . exon 311488 312462 . - . ID=Physo127876.1;Parent=Physo127876;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 313527 316892 . + . ID=Physo127877;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30086;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 313527 316892 . + . ID=Physo127877;Parent=Physo127877;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 313527 314478 . + 0 ID=Physo127877;Parent=Physo127877;rank=1 scaffold_3 . exon 313527 314478 . + . ID=Physo127877.1;Parent=Physo127877;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 314634 314831 . + 0 ID=Physo127877;Parent=Physo127877;rank=2 scaffold_3 . exon 314634 314831 . + . ID=Physo127877.2;Parent=Physo127877;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 314883 315200 . + 0 ID=Physo127877;Parent=Physo127877;rank=3 scaffold_3 . exon 314883 315200 . + . ID=Physo127877.3;Parent=Physo127877;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 315363 316443 . + 0 ID=Physo127877;Parent=Physo127877;rank=4 scaffold_3 . exon 315363 316443 . + . ID=Physo127877.4;Parent=Physo127877;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_3 . CDS 316580 316631 . + 0 ID=Physo127877;Parent=Physo127877;rank=5 scaffold_3 . exon 316580 316631 . + . ID=Physo127877.5;Parent=Physo127877;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 316661 316682 . + 0 ID=Physo127877;Parent=Physo127877;rank=6 scaffold_3 . exon 316661 316682 . + . ID=Physo127877.6;Parent=Physo127877;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_3 . CDS 316849 316892 . + 0 ID=Physo127877;Parent=Physo127877;rank=7 scaffold_3 . exon 316849 316892 . + . ID=Physo127877.7;Parent=Physo127877;constitutive=1;ensembl_phase=1;rank=7 scaffold_3 . repeat_region 323995 334238 . ? . description=dust scaffold_3 . repeat_region 336955 336981 . ? . description=dust scaffold_3 . repeat_region 336955 336981 . ? . description=trf scaffold_3 . repeat_region 337261 337365 . ? . description=trf scaffold_3 . repeat_region 337640 337725 . ? . description=trf scaffold_3 . biological_region 337934 337936 0.999 + . logic_name=eponine scaffold_3 . biological_region 337984 337987 0.999 + . logic_name=eponine scaffold_3 . biological_region 338019 338020 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 336907 340311 . + . ID=Physo108218;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30007;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 336907 340311 . + . ID=Physo108218;Parent=Physo108218;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 336907 337042 . + 0 ID=Physo108218;Parent=Physo108218;rank=1 scaffold_3 . exon 336907 337042 . + . ID=Physo108218.1;Parent=Physo108218;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 337100 337601 . + 0 ID=Physo108218;Parent=Physo108218;rank=2 scaffold_3 . exon 337100 337601 . + . ID=Physo108218.2;Parent=Physo108218;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 337758 340108 . + 0 ID=Physo108218;Parent=Physo108218;rank=3 scaffold_3 . exon 337758 340108 . + . ID=Physo108218.3;Parent=Physo108218;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 340232 340311 . + 0 ID=Physo108218;Parent=Physo108218;rank=4 scaffold_3 ensembl protein_coding_gene 336237 336638 . + . ID=Physo127878;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30087;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 336237 336638 . + . ID=Physo127878;Parent=Physo127878;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 336237 336638 . + 0 ID=Physo127878;Parent=Physo127878;rank=1 scaffold_3 . exon 336237 336638 . + . ID=Physo127878.1;Parent=Physo127878;constitutive=1;rank=1 scaffold_3 . repeat_region 345207 345389 . + . description=GypsyPi-1c_LTR scaffold_3 . repeat_region 345390 353043 . + . description=GypsyPi-1c_I-int scaffold_3 . exon 340232 340311 . + . ID=Physo108218.4;Parent=Physo108218;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 ensembl protein_coding_gene 342648 343614 . + . ID=Physo127880;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30089;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 342648 343614 . + . ID=Physo127880;Parent=Physo127880;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 342648 342699 . + 0 ID=Physo127880;Parent=Physo127880;rank=1 scaffold_3 . exon 342648 342699 . + . ID=Physo127880.1;Parent=Physo127880;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 342744 342751 . + 0 ID=Physo127880;Parent=Physo127880;rank=2 scaffold_3 . exon 342744 342751 . + . ID=Physo127880.2;Parent=Physo127880;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 342934 343042 . + 0 ID=Physo127880;Parent=Physo127880;rank=3 scaffold_3 . exon 342934 343042 . + . ID=Physo127880.3;Parent=Physo127880;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 343167 343492 . + 0 ID=Physo127880;Parent=Physo127880;rank=4 scaffold_3 . exon 343167 343614 . + . ID=Physo127880.4;Parent=Physo127880;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_3 ensembl protein_coding_gene 345477 350399 . + . ID=Physo127881;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30090;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 345477 350399 . + . ID=Physo127881;Parent=Physo127881;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 345477 346136 . + 0 ID=Physo127881;Parent=Physo127881;rank=1 scaffold_3 . exon 345477 346136 . + . ID=Physo127881.1;Parent=Physo127881;constitutive=1;rank=1 scaffold_3 . CDS 346230 346477 . + 0 ID=Physo127881;Parent=Physo127881;rank=2 scaffold_3 . exon 346230 346477 . + . ID=Physo127881.2;Parent=Physo127881;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 346651 346781 . + 0 ID=Physo127881;Parent=Physo127881;rank=3 scaffold_3 . exon 346651 346781 . + . ID=Physo127881.3;Parent=Physo127881;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 346833 347231 . + 0 ID=Physo127881;Parent=Physo127881;rank=4 scaffold_3 . exon 346833 347231 . + . ID=Physo127881.4;Parent=Physo127881;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 347313 348142 . + 0 ID=Physo127881;Parent=Physo127881;rank=5 scaffold_3 . exon 347313 348142 . + . ID=Physo127881.5;Parent=Physo127881;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 348259 348588 . + 0 ID=Physo127881;Parent=Physo127881;rank=6 scaffold_3 . exon 348259 348588 . + . ID=Physo127881.6;Parent=Physo127881;constitutive=1;rank=6 scaffold_3 . CDS 348639 348716 . + 0 ID=Physo127881;Parent=Physo127881;rank=7 scaffold_3 . CDS 349004 349495 . + 0 ID=Physo127881;Parent=Physo127881;rank=8 scaffold_3 . CDS 349565 350344 . + 0 ID=Physo127881;Parent=Physo127881;rank=9 scaffold_3 . CDS 350391 350399 . + 0 ID=Physo127881;Parent=Physo127881;rank=10 scaffold_3 . biological_region 348764 348766 0.999 - . logic_name=eponine scaffold_3 . biological_region 350789 350792 0.999 + . logic_name=eponine scaffold_3 . biological_region 350838 350843 0.999 + . logic_name=eponine scaffold_3 . biological_region 352252 352252 0.999 - . logic_name=eponine scaffold_3 . biological_region 352590 352595 0.999 - . logic_name=eponine scaffold_3 . repeat_region 354350 354357 . ? . description=dust scaffold_3 . biological_region 354646 354649 0.999 - . logic_name=eponine scaffold_3 . repeat_region 354680 354688 . ? . description=dust scaffold_3 . repeat_region 355017 355063 . ? . description=trf scaffold_3 . biological_region 355839 355841 0.999 - . logic_name=eponine scaffold_3 . biological_region 356536 356538 0.999 - . logic_name=eponine scaffold_3 . exon 348639 348716 . + . ID=Physo127881.7;Parent=Physo127881;constitutive=1;rank=7 scaffold_3 . exon 349004 349495 . + . ID=Physo127881.8;Parent=Physo127881;constitutive=1;rank=8 scaffold_3 . exon 349565 350344 . + . ID=Physo127881.9;Parent=Physo127881;constitutive=1;rank=9 scaffold_3 . exon 350391 350399 . + . ID=Physo127881.10;Parent=Physo127881;constitutive=1;rank=10 scaffold_3 ensembl protein_coding_gene 350682 352575 . - . ID=Physo127882;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30091;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 350682 352575 . - . ID=Physo127882;Parent=Physo127882;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 350682 351158 . - 0 ID=Physo127882;Parent=Physo127882;rank=3 scaffold_3 . exon 350682 351158 . - . ID=Physo127882.3;Parent=Physo127882;constitutive=1;rank=3 scaffold_3 . CDS 351179 351396 . - 0 ID=Physo127882;Parent=Physo127882;rank=2 scaffold_3 . exon 351179 351396 . - . ID=Physo127882.2;Parent=Physo127882;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 351585 352575 . - 0 ID=Physo127882;Parent=Physo127882;rank=1 scaffold_3 . exon 351585 352575 . - . ID=Physo127882.1;Parent=Physo127882;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 353764 354264 . + . ID=Physo127883;biotype=protein_coding;description=PsAvh45 [Source:UniProtKB/TrEMBL%3BAcc:E0W4P4];external_name=estExt_fgenesh1_pg.C_30092;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 353764 354264 . + . ID=Physo127883;Parent=Physo127883;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 353764 354264 . + 0 ID=Physo127883;Parent=Physo127883;rank=1 scaffold_3 . exon 353764 354264 . + . ID=Physo127883.1;Parent=Physo127883;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 356765 359986 . - . ID=Physo127885;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30094;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 356765 359986 . - . ID=Physo127885;Parent=Physo127885;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 356765 357025 . - . ID=Physo127885.6;Parent=Physo127885;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_3 . CDS 356766 357025 . - 0 ID=Physo127885;Parent=Physo127885;rank=6 scaffold_3 . CDS 357093 357138 . - 0 ID=Physo127885;Parent=Physo127885;rank=5 scaffold_3 . exon 357093 357138 . - . ID=Physo127885.5;Parent=Physo127885;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_3 . CDS 357248 357307 . - 0 ID=Physo127885;Parent=Physo127885;rank=4 scaffold_3 . exon 357248 357307 . - . ID=Physo127885.4;Parent=Physo127885;constitutive=1;rank=4 scaffold_3 . CDS 357500 358092 . - 0 ID=Physo127885;Parent=Physo127885;rank=3 scaffold_3 . exon 357500 358092 . - . ID=Physo127885.3;Parent=Physo127885;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 358191 358276 . - 0 ID=Physo127885;Parent=Physo127885;rank=2 scaffold_3 . exon 358191 358276 . - . ID=Physo127885.2;Parent=Physo127885;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 358437 359986 . - 0 ID=Physo127885;Parent=Physo127885;rank=1 scaffold_3 ensembl protein_coding_gene 354935 356660 . + . ID=Physo155361;biotype=protein_coding;external_name=C_scaffold_3000031;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 354935 356660 . + . ID=Physo155361;Parent=Physo155361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 354935 355528 . + 0 ID=Physo155361;Parent=Physo155361;rank=1 scaffold_3 . exon 354935 355528 . + . ID=Physo155361.1;Parent=Physo155361;constitutive=1;rank=1 scaffold_3 . CDS 355599 355698 . + 0 ID=Physo155361;Parent=Physo155361;rank=2 scaffold_3 . exon 355599 355698 . + . ID=Physo155361.2;Parent=Physo155361;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 355771 356660 . + 0 ID=Physo155361;Parent=Physo155361;rank=3 scaffold_3 . exon 355771 356660 . + . ID=Physo155361.3;Parent=Physo155361;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . exon 358437 359986 . - . ID=Physo127885.1;Parent=Physo127885;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 361979 362908 . + . ID=Physo127886;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30095;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 361979 362908 . + . ID=Physo127886;Parent=Physo127886;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 361979 362908 . + 0 ID=Physo127886;Parent=Physo127886;rank=1 scaffold_3 . exon 361979 362908 . + . ID=Physo127886.1;Parent=Physo127886;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 366771 367790 . - . ID=Physo127887;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30096;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 366771 367790 . - . ID=Physo127887;Parent=Physo127887;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 366771 367790 . - 0 ID=Physo127887;Parent=Physo127887;rank=1 scaffold_3 . exon 366771 367790 . - . ID=Physo127887.1;Parent=Physo127887;constitutive=1;rank=1 scaffold_3 . repeat_region 368988 369062 . ? . description=trf scaffold_3 . biological_region 374671 374676 0.999 + . logic_name=eponine scaffold_3 . biological_region 374724 374730 0.999 - . logic_name=eponine scaffold_3 . biological_region 374781 374784 0.999 + . logic_name=eponine scaffold_3 . biological_region 375269 375271 0.999 - . logic_name=eponine scaffold_3 . repeat_region 375291 375569 . - . description=GypsyPi-1c_I-int scaffold_3 . biological_region 375342 375345 0.999 + . logic_name=eponine scaffold_3 . repeat_region 375826 378155 . - . description=GypsyPi-1c_I-int scaffold_3 . biological_region 377216 377218 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 375711 378869 . - . ID=Physo127888;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30097;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 375711 378869 . - . ID=Physo127888;Parent=Physo127888;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 375711 375774 . - 0 ID=Physo127888;Parent=Physo127888;rank=6 scaffold_3 . exon 375711 375774 . - . ID=Physo127888.6;Parent=Physo127888;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 . CDS 375903 377104 . - 0 ID=Physo127888;Parent=Physo127888;rank=5 scaffold_3 . exon 375903 377104 . - . ID=Physo127888.5;Parent=Physo127888;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_3 . CDS 377196 377321 . - 0 ID=Physo127888;Parent=Physo127888;rank=4 scaffold_3 . exon 377196 377321 . - . ID=Physo127888.4;Parent=Physo127888;constitutive=1;rank=4 scaffold_3 . CDS 377578 377836 . - 0 ID=Physo127888;Parent=Physo127888;rank=3 scaffold_3 . exon 377578 377836 . - . ID=Physo127888.3;Parent=Physo127888;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 378149 378549 . - 0 ID=Physo127888;Parent=Physo127888;rank=2 scaffold_3 . CDS 378705 378869 . - 0 ID=Physo127888;Parent=Physo127888;rank=1 scaffold_3 . repeat_region 385015 385022 . ? . description=dust scaffold_3 . exon 378149 378549 . - . ID=Physo127888.2;Parent=Physo127888;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . exon 378705 378869 . - . ID=Physo127888.1;Parent=Physo127888;constitutive=1;rank=1 scaffold_3 . biological_region 390855 390857 0.999 + . logic_name=eponine scaffold_3 . biological_region 390984 390989 0.999 - . logic_name=eponine scaffold_3 . biological_region 393877 393880 0.999 + . logic_name=eponine scaffold_3 . biological_region 396279 396281 0.999 + . logic_name=eponine scaffold_3 . biological_region 397470 397472 0.999 - . logic_name=eponine scaffold_3 . biological_region 397526 397529 0.999 + . logic_name=eponine scaffold_3 . biological_region 397741 397747 0.999 - . logic_name=eponine scaffold_3 . biological_region 397779 397781 0.999 + . logic_name=eponine scaffold_3 . biological_region 397837 397847 0.999 + . logic_name=eponine scaffold_3 . biological_region 397851 397856 0.999 - . logic_name=eponine scaffold_3 . biological_region 397859 397865 0.999 + . logic_name=eponine scaffold_3 . biological_region 397889 397894 0.999 + . logic_name=eponine scaffold_3 . biological_region 397908 397909 0.999 + . logic_name=eponine scaffold_3 . biological_region 397913 397923 0.999 - . logic_name=eponine scaffold_3 . biological_region 397941 397951 0.999 - . logic_name=eponine scaffold_3 . biological_region 397969 397972 0.999 - . logic_name=eponine scaffold_3 . biological_region 397995 398002 0.999 + . logic_name=eponine scaffold_3 . biological_region 398016 398022 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 390788 393448 . + . ID=Physo127889;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30098;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 390788 393448 . + . ID=Physo127889;Parent=Physo127889;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 390788 393448 . + 0 ID=Physo127889;Parent=Physo127889;rank=1 scaffold_3 . exon 390788 393448 . + . ID=Physo127889.1;Parent=Physo127889;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 393494 395691 . - . ID=Physo127890;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30099;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 393494 395691 . - . ID=Physo127890;Parent=Physo127890;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 393494 394177 . - . ID=Physo127890.3;Parent=Physo127890;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_3 . CDS 393725 394177 . - 0 ID=Physo127890;Parent=Physo127890;rank=3 scaffold_3 . CDS 394258 395142 . - 0 ID=Physo127890;Parent=Physo127890;rank=2 scaffold_3 . exon 394258 395142 . - . ID=Physo127890.2;Parent=Physo127890;constitutive=1;rank=2 scaffold_3 . CDS 395562 395690 . - 0 ID=Physo127890;Parent=Physo127890;rank=1 scaffold_3 . exon 395562 395691 . - . ID=Physo127890.1;Parent=Physo127890;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 397263 399365 . + . ID=Physo127891;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30100;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 397263 399365 . + . ID=Physo127891;Parent=Physo127891;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 397263 399365 . + 0 ID=Physo127891;Parent=Physo127891;rank=1 scaffold_3 . exon 397263 399365 . + . ID=Physo127891.1;Parent=Physo127891;constitutive=1;rank=1 scaffold_3 . repeat_region 398916 398999 . ? . description=trf scaffold_3 . repeat_region 398916 399014 . ? . description=trf scaffold_3 . repeat_region 398916 399014 . ? . description=trf scaffold_3 . repeat_region 398991 399042 . ? . description=trf scaffold_3 . repeat_region 401326 401350 . ? . description=trf scaffold_3 . repeat_region 406538 406547 . ? . description=dust scaffold_3 ensembl protein_coding_gene 401444 406503 . - . ID=Physo127893;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30102;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 401444 406503 . - . ID=Physo127893;Parent=Physo127893;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 401444 404792 . - 0 ID=Physo127893;Parent=Physo127893;rank=3 scaffold_3 . exon 401444 404792 . - . ID=Physo127893.3;Parent=Physo127893;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 404970 405963 . - 0 ID=Physo127893;Parent=Physo127893;rank=2 scaffold_3 . exon 404970 405963 . - . ID=Physo127893.2;Parent=Physo127893;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 406038 406503 . - 0 ID=Physo127893;Parent=Physo127893;rank=1 scaffold_3 . exon 406038 406503 . - . ID=Physo127893.1;Parent=Physo127893;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 406763 408445 . - . ID=Physo127894;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30103;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 406763 408445 . - . ID=Physo127894;Parent=Physo127894;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 406763 408445 . - 0 ID=Physo127894;Parent=Physo127894;rank=1 scaffold_3 . exon 406763 408445 . - . ID=Physo127894.1;Parent=Physo127894;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 400096 401379 . + . ID=Physo155367;biotype=protein_coding;external_name=C_scaffold_3000037;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 400096 401379 . + . ID=Physo155367;Parent=Physo155367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 400096 401379 . + 0 ID=Physo155367;Parent=Physo155367;rank=1 scaffold_3 . exon 400096 401379 . + . ID=Physo155367.1;Parent=Physo155367;constitutive=1;rank=1 scaffold_3 . biological_region 410753 410755 0.999 - . logic_name=eponine scaffold_3 . biological_region 413463 413465 0.999 - . logic_name=eponine scaffold_3 . biological_region 413690 413695 0.999 + . logic_name=eponine scaffold_3 . biological_region 413714 413720 0.999 - . logic_name=eponine scaffold_3 . biological_region 413740 413746 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 409441 412752 . + . ID=Physo127895;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30104;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 409441 412752 . + . ID=Physo127895;Parent=Physo127895;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 409441 412752 . + 0 ID=Physo127895;Parent=Physo127895;rank=1 scaffold_3 . exon 409441 412752 . + . ID=Physo127895.1;Parent=Physo127895;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 414486 416021 . + . ID=Physo127896;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30105;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 414486 416021 . + . ID=Physo127896;Parent=Physo127896;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 414486 416021 . + 0 ID=Physo127896;Parent=Physo127896;rank=1 scaffold_3 . exon 414486 416021 . + . ID=Physo127896.1;Parent=Physo127896;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 416665 418439 . + . ID=Physo127897;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30106;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 416665 418439 . + . ID=Physo127897;Parent=Physo127897;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 416665 417014 . + 0 ID=Physo127897;Parent=Physo127897;rank=1 scaffold_3 . exon 416665 417014 . + . ID=Physo127897.1;Parent=Physo127897;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 417090 417244 . + 0 ID=Physo127897;Parent=Physo127897;rank=2 scaffold_3 . exon 417090 417244 . + . ID=Physo127897.2;Parent=Physo127897;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 417339 417594 . + 0 ID=Physo127897;Parent=Physo127897;rank=3 scaffold_3 . exon 417339 417594 . + . ID=Physo127897.3;Parent=Physo127897;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . CDS 417676 417852 . + 0 ID=Physo127897;Parent=Physo127897;rank=4 scaffold_3 . exon 417676 417852 . + . ID=Physo127897.4;Parent=Physo127897;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_3 . CDS 417878 417965 . + 0 ID=Physo127897;Parent=Physo127897;rank=5 scaffold_3 . exon 417878 417965 . + . ID=Physo127897.5;Parent=Physo127897;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 418143 418439 . + 0 ID=Physo127897;Parent=Physo127897;rank=6 scaffold_3 . repeat_region 418803 418812 . ? . description=dust scaffold_3 . repeat_region 420830 420919 . ? . description=trf scaffold_3 . repeat_region 423728 423735 . ? . description=dust scaffold_3 . repeat_region 423801 423818 . ? . description=dust scaffold_3 . exon 418143 418439 . + . ID=Physo127897.6;Parent=Physo127897;constitutive=1;rank=6 scaffold_3 ensembl protein_coding_gene 423875 425412 . + . ID=Physo127898;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30107;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 423875 425412 . + . ID=Physo127898;Parent=Physo127898;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 423875 425367 . + . ID=Physo127898.1;Parent=Physo127898;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_3 . CDS 423893 425367 . + 0 ID=Physo127898;Parent=Physo127898;rank=1 scaffold_3 . CDS 425397 425412 . + 0 ID=Physo127898;Parent=Physo127898;rank=2 scaffold_3 . exon 425397 425412 . + . ID=Physo127898.2;Parent=Physo127898;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 ensembl protein_coding_gene 425710 426766 . - . ID=Physo127899;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30108;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 425710 426766 . - . ID=Physo127899;Parent=Physo127899;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 425710 425833 . - 0 ID=Physo127899;Parent=Physo127899;rank=5 scaffold_3 . exon 425710 425833 . - . ID=Physo127899.5;Parent=Physo127899;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 425906 426111 . - 0 ID=Physo127899;Parent=Physo127899;rank=4 scaffold_3 . exon 425906 426111 . - . ID=Physo127899.4;Parent=Physo127899;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_3 . CDS 426185 426273 . - 0 ID=Physo127899;Parent=Physo127899;rank=3 scaffold_3 . exon 426185 426273 . - . ID=Physo127899.3;Parent=Physo127899;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 426350 426566 . - 0 ID=Physo127899;Parent=Physo127899;rank=2 scaffold_3 . exon 426350 426566 . - . ID=Physo127899.2;Parent=Physo127899;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 426647 426766 . - 0 ID=Physo127899;Parent=Physo127899;rank=1 scaffold_3 . exon 426647 426766 . - . ID=Physo127899.1;Parent=Physo127899;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 427118 429067 . + . ID=Physo127900;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30109;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 427118 429067 . + . ID=Physo127900;Parent=Physo127900;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 427118 428998 . + 0 ID=Physo127900;Parent=Physo127900;rank=1 scaffold_3 . exon 427118 429067 . + . ID=Physo127900.1;Parent=Physo127900;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 . biological_region 429962 429964 0.999 - . logic_name=eponine scaffold_3 . repeat_region 431839 432013 . + . description=(CTG)n scaffold_3 . repeat_region 432572 432621 . + . description=(CTG)n scaffold_3 . biological_region 432897 432897 0.999 + . logic_name=eponine scaffold_3 . biological_region 433696 433696 0.999 + . logic_name=eponine scaffold_3 . biological_region 434044 434048 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 429280 430986 . - . ID=Physo127901;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30110;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 429280 430986 . - . ID=Physo127901;Parent=Physo127901;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 429280 429432 . - 0 ID=Physo127901;Parent=Physo127901;rank=3 scaffold_3 . exon 429280 429432 . - . ID=Physo127901.3;Parent=Physo127901;constitutive=1;rank=3 scaffold_3 . CDS 429513 429652 . - 0 ID=Physo127901;Parent=Physo127901;rank=2 scaffold_3 . exon 429513 429652 . - . ID=Physo127901.2;Parent=Physo127901;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 429720 430986 . - 0 ID=Physo127901;Parent=Physo127901;rank=1 scaffold_3 . exon 429720 430986 . - . ID=Physo127901.1;Parent=Physo127901;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 431188 433254 . - . ID=Physo127902;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30111;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 431188 433254 . - . ID=Physo127902;Parent=Physo127902;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 431188 433254 . - . ID=Physo127902.1;Parent=Physo127902;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 . CDS 431332 433254 . - 0 ID=Physo127902;Parent=Physo127902;rank=1 scaffold_3 ensembl protein_coding_gene 433615 436716 . - . ID=Physo127903;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30112;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 433615 436716 . - . ID=Physo127903;Parent=Physo127903;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 433615 436716 . - 0 ID=Physo127903;Parent=Physo127903;rank=1 scaffold_3 . exon 433615 436716 . - . ID=Physo127903.1;Parent=Physo127903;constitutive=1;rank=1 scaffold_3 . repeat_region 446610 446651 . ? . description=dust scaffold_3 . repeat_region 446610 446651 . ? . description=trf scaffold_3 . repeat_region 447633 447832 . ? . description=trf scaffold_3 ensembl protein_coding_gene 447357 448991 . + . ID=Physo127905;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30114;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 447357 448991 . + . ID=Physo127905;Parent=Physo127905;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 447357 448991 . + 0 ID=Physo127905;Parent=Physo127905;rank=1 scaffold_3 . exon 447357 448991 . + . ID=Physo127905.1;Parent=Physo127905;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 442251 446592 . - . ID=Physo155370;biotype=protein_coding;external_name=C_scaffold_3000040;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 442251 446592 . - . ID=Physo155370;Parent=Physo155370;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 442251 442269 . - 0 ID=Physo155370;Parent=Physo155370;rank=3 scaffold_3 . exon 442251 442269 . - . ID=Physo155370.3;Parent=Physo155370;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 442334 442851 . - 0 ID=Physo155370;Parent=Physo155370;rank=2 scaffold_3 . exon 442334 442851 . - . ID=Physo155370.2;Parent=Physo155370;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 442948 446592 . - 0 ID=Physo155370;Parent=Physo155370;rank=1 scaffold_3 . exon 442948 446592 . - . ID=Physo155370.1;Parent=Physo155370;constitutive=1;rank=1 scaffold_3 . biological_region 448436 448438 0.999 - . logic_name=eponine scaffold_3 . biological_region 450273 450276 0.999 + . logic_name=eponine scaffold_3 . biological_region 450330 450330 0.999 + . logic_name=eponine scaffold_3 . biological_region 450377 450383 0.999 - . logic_name=eponine scaffold_3 . biological_region 450431 450432 0.999 - . logic_name=eponine scaffold_3 . biological_region 450536 450537 0.999 + . logic_name=eponine scaffold_3 . biological_region 452382 452386 0.999 + . logic_name=eponine scaffold_3 . repeat_region 453467 453546 . + . description=(CTG)n scaffold_3 . biological_region 453713 453716 0.999 + . logic_name=eponine scaffold_3 . biological_region 453731 453737 0.999 + . logic_name=eponine scaffold_3 . biological_region 453802 453805 0.999 - . logic_name=eponine scaffold_3 . biological_region 453821 453823 0.999 - . logic_name=eponine scaffold_3 . biological_region 454122 454123 0.999 + . logic_name=eponine scaffold_3 . biological_region 454164 454170 0.999 + . logic_name=eponine scaffold_3 . biological_region 454276 454279 0.999 - . logic_name=eponine scaffold_3 . biological_region 455071 455075 0.999 + . logic_name=eponine scaffold_3 . biological_region 456809 456811 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 454159 456945 . + . ID=Physo127908;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30117;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 454159 456945 . + . ID=Physo127908;Parent=Physo127908;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 454159 456945 . + 0 ID=Physo127908;Parent=Physo127908;rank=1 scaffold_3 . exon 454159 456945 . + . ID=Physo127908.1;Parent=Physo127908;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 457298 463381 . + . ID=Physo127909;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30118;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 457298 463381 . + . ID=Physo127909;Parent=Physo127909;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 457298 463381 . + . ID=Physo127909.1;Parent=Physo127909;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 457529 463381 . + 0 ID=Physo127909;Parent=Physo127909;rank=1 scaffold_3 ensembl protein_coding_gene 450249 451615 . + . ID=Physo155373;biotype=protein_coding;external_name=C_scaffold_3000043;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 450249 451615 . + . ID=Physo155373;Parent=Physo155373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 450249 450846 . + 0 ID=Physo155373;Parent=Physo155373;rank=1 scaffold_3 . exon 450249 450846 . + . ID=Physo155373.1;Parent=Physo155373;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 450990 451396 . + 0 ID=Physo155373;Parent=Physo155373;rank=2 scaffold_3 . exon 450990 451396 . + . ID=Physo155373.2;Parent=Physo155373;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 451427 451615 . + 0 ID=Physo155373;Parent=Physo155373;rank=3 scaffold_3 . exon 451427 451615 . + . ID=Physo155373.3;Parent=Physo155373;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 451728 453830 . - . ID=Physo155375;biotype=protein_coding;external_name=C_scaffold_3000045;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 451728 453830 . - . ID=Physo155375;Parent=Physo155375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 451728 451818 . - 0 ID=Physo155375;Parent=Physo155375;rank=3 scaffold_3 . exon 451728 451818 . - . ID=Physo155375.3;Parent=Physo155375;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 452497 452813 . - 0 ID=Physo155375;Parent=Physo155375;rank=2 scaffold_3 . exon 452497 452813 . - . ID=Physo155375.2;Parent=Physo155375;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 452886 453830 . - 0 ID=Physo155375;Parent=Physo155375;rank=1 scaffold_3 . exon 452886 453830 . - . ID=Physo155375.1;Parent=Physo155375;constitutive=1;rank=1 scaffold_3 . repeat_region 465397 465406 . ? . description=dust scaffold_3 ensembl protein_coding_gene 463473 464975 . - . ID=Physo108220;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30009;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 463473 464975 . - . ID=Physo108220;Parent=Physo108220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 463473 463651 . - . ID=Physo108220.2;Parent=Physo108220;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_3 . CDS 463591 463651 . - 0 ID=Physo108220;Parent=Physo108220;rank=2 scaffold_3 . CDS 463739 464946 . - 0 ID=Physo108220;Parent=Physo108220;rank=1 scaffold_3 . exon 463739 464975 . - . ID=Physo108220.1;Parent=Physo108220;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 465834 467711 . - . ID=Physo155377;biotype=protein_coding;external_name=C_scaffold_3000047;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 465834 467711 . - . ID=Physo155377;Parent=Physo155377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 465834 465860 . - 0 ID=Physo155377;Parent=Physo155377;rank=3 scaffold_3 . exon 465834 465860 . - . ID=Physo155377.3;Parent=Physo155377;constitutive=1;rank=3 scaffold_3 . CDS 466083 467279 . - 0 ID=Physo155377;Parent=Physo155377;rank=2 scaffold_3 . exon 466083 467279 . - . ID=Physo155377.2;Parent=Physo155377;constitutive=1;rank=2 scaffold_3 . CDS 467376 467711 . - 0 ID=Physo155377;Parent=Physo155377;rank=1 scaffold_3 . exon 467376 467711 . - . ID=Physo155377.1;Parent=Physo155377;constitutive=1;rank=1 scaffold_3 . repeat_region 468726 468905 . + . description=(CTG)n scaffold_3 . repeat_region 468797 468857 . ? . description=trf scaffold_3 . repeat_region 468797 468881 . ? . description=trf scaffold_3 . repeat_region 469149 469196 . ? . description=trf scaffold_3 . repeat_region 470425 470451 . ? . description=trf scaffold_3 . repeat_region 470495 470518 . ? . description=trf scaffold_3 . repeat_region 470691 470718 . ? . description=trf scaffold_3 . repeat_region 471164 471183 . ? . description=trf scaffold_3 . biological_region 471282 471286 0.999 + . logic_name=eponine scaffold_3 . biological_region 471299 471304 0.999 + . logic_name=eponine scaffold_3 . biological_region 471413 471419 0.999 - . logic_name=eponine scaffold_3 . biological_region 471495 471499 0.999 - . logic_name=eponine scaffold_3 . biological_region 471637 471637 0.999 + . logic_name=eponine scaffold_3 . biological_region 471698 471699 0.999 - . logic_name=eponine scaffold_3 . biological_region 475779 475784 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 468408 470689 . - . ID=Physo127912;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30121;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 468408 470689 . - . ID=Physo127912;Parent=Physo127912;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 468408 470241 . - 0 ID=Physo127912;Parent=Physo127912;rank=2 scaffold_3 . exon 468408 470241 . - . ID=Physo127912.2;Parent=Physo127912;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 470325 470689 . - 0 ID=Physo127912;Parent=Physo127912;rank=1 scaffold_3 . exon 470325 470689 . - . ID=Physo127912.1;Parent=Physo127912;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 471304 473779 . + . ID=Physo127913;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30122;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 471304 473779 . + . ID=Physo127913;Parent=Physo127913;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 471304 473697 . + 0 ID=Physo127913;Parent=Physo127913;rank=1 scaffold_3 . exon 471304 473779 . + . ID=Physo127913.1;Parent=Physo127913;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 473811 475281 . - . ID=Physo127914;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30123;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 473811 475281 . - . ID=Physo127914;Parent=Physo127914;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 473811 474033 . - . ID=Physo127914.2;Parent=Physo127914;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_3 . CDS 473815 474033 . - 0 ID=Physo127914;Parent=Physo127914;rank=2 scaffold_3 . CDS 474109 475281 . - 0 ID=Physo127914;Parent=Physo127914;rank=1 scaffold_3 . exon 474109 475281 . - . ID=Physo127914.1;Parent=Physo127914;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 475450 477466 . + . ID=Physo127915;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30124;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 475450 477466 . + . ID=Physo127915;Parent=Physo127915;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 475450 475730 . + 0 ID=Physo127915;Parent=Physo127915;rank=1 scaffold_3 . exon 475450 475730 . + . ID=Physo127915.1;Parent=Physo127915;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 475800 475841 . + 0 ID=Physo127915;Parent=Physo127915;rank=2 scaffold_3 . exon 475800 475841 . + . ID=Physo127915.2;Parent=Physo127915;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 475937 476373 . + 0 ID=Physo127915;Parent=Physo127915;rank=3 scaffold_3 . exon 475937 476373 . + . ID=Physo127915.3;Parent=Physo127915;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 476988 477466 . + 0 ID=Physo127915;Parent=Physo127915;rank=4 scaffold_3 . exon 476988 477466 . + . ID=Physo127915.4;Parent=Physo127915;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 ensembl protein_coding_gene 477579 478103 . - . ID=Physo127916;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30125;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 477579 478103 . - . ID=Physo127916;Parent=Physo127916;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 477579 478103 . - 0 ID=Physo127916;Parent=Physo127916;rank=1 scaffold_3 . exon 477579 478103 . - . ID=Physo127916.1;Parent=Physo127916;constitutive=1;rank=1 scaffold_3 . repeat_region 483510 483537 . ? . description=dust scaffold_3 ensembl protein_coding_gene 478527 479648 . - . ID=Physo127917;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30126;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 478527 479648 . - . ID=Physo127917;Parent=Physo127917;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 478527 479284 . - 0 ID=Physo127917;Parent=Physo127917;rank=2 scaffold_3 . exon 478527 479284 . - . ID=Physo127917.2;Parent=Physo127917;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 479363 479648 . - 0 ID=Physo127917;Parent=Physo127917;rank=1 scaffold_3 . exon 479363 479648 . - . ID=Physo127917.1;Parent=Physo127917;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 480388 481498 . + . ID=Physo127918;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30127;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 480388 481498 . + . ID=Physo127918;Parent=Physo127918;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 480388 480609 . + . ID=Physo127918.1;Parent=Physo127918;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 480427 480609 . + 0 ID=Physo127918;Parent=Physo127918;rank=1 scaffold_3 . CDS 480694 480816 . + 0 ID=Physo127918;Parent=Physo127918;rank=2 scaffold_3 . exon 480694 480816 . + . ID=Physo127918.2;Parent=Physo127918;constitutive=1;rank=2 scaffold_3 . CDS 480906 481085 . + 0 ID=Physo127918;Parent=Physo127918;rank=3 scaffold_3 . exon 480906 481085 . + . ID=Physo127918.3;Parent=Physo127918;constitutive=1;rank=3 scaffold_3 . CDS 481154 481498 . + 0 ID=Physo127918;Parent=Physo127918;rank=4 scaffold_3 . exon 481154 481498 . + . ID=Physo127918.4;Parent=Physo127918;constitutive=1;rank=4 scaffold_3 ensembl protein_coding_gene 483540 484655 . + . ID=Physo127919;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30128;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 483540 484655 . + . ID=Physo127919;Parent=Physo127919;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 483540 483722 . + 0 ID=Physo127919;Parent=Physo127919;rank=1 scaffold_3 . exon 483540 483722 . + . ID=Physo127919.1;Parent=Physo127919;constitutive=1;rank=1 scaffold_3 . CDS 483826 483948 . + 0 ID=Physo127919;Parent=Physo127919;rank=2 scaffold_3 . exon 483826 483948 . + . ID=Physo127919.2;Parent=Physo127919;constitutive=1;rank=2 scaffold_3 . CDS 484033 484212 . + 0 ID=Physo127919;Parent=Physo127919;rank=3 scaffold_3 . exon 484033 484212 . + . ID=Physo127919.3;Parent=Physo127919;constitutive=1;rank=3 scaffold_3 . CDS 484293 484655 . + 0 ID=Physo127919;Parent=Physo127919;rank=4 scaffold_3 . exon 484293 484655 . + . ID=Physo127919.4;Parent=Physo127919;constitutive=1;rank=4 scaffold_3 . biological_region 490263 490270 0.999 - . logic_name=eponine scaffold_3 . biological_region 490318 490325 0.999 + . logic_name=eponine scaffold_3 . biological_region 490451 490456 0.999 - . logic_name=eponine scaffold_3 . biological_region 490480 490486 0.999 - . logic_name=eponine scaffold_3 . biological_region 490608 490609 0.999 + . logic_name=eponine scaffold_3 . biological_region 490621 490624 0.999 + . logic_name=eponine scaffold_3 . biological_region 490849 490859 0.999 - . logic_name=eponine scaffold_3 . biological_region 491240 491245 0.999 + . logic_name=eponine scaffold_3 . biological_region 491889 491894 0.999 + . logic_name=eponine scaffold_3 . repeat_region 493896 493915 . ? . description=trf scaffold_3 . repeat_region 494262 494281 . ? . description=trf scaffold_3 ensembl protein_coding_gene 490758 494342 . + . ID=Physo127920;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30129;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 490758 494342 . + . ID=Physo127920;Parent=Physo127920;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 490758 494342 . + 0 ID=Physo127920;Parent=Physo127920;rank=1 scaffold_3 . exon 490758 494342 . + . ID=Physo127920.1;Parent=Physo127920;constitutive=1;rank=1 scaffold_3 . repeat_region 501695 501730 . ? . description=dust scaffold_3 . repeat_region 501696 501726 . + . description=(CGAGT)n scaffold_3 . repeat_region 502999 503054 . ? . description=dust scaffold_3 . repeat_region 503219 503304 . ? . description=dust scaffold_3 . repeat_region 503747 503761 . ? . description=dust scaffold_3 . repeat_region 506758 506765 . ? . description=dust scaffold_3 ensembl protein_coding_gene 501964 503851 . - . ID=Physo110502;biotype=protein_coding;external_name=estExt_Genewise1.C_30032;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 501964 503851 . - . ID=Physo110502;Parent=Physo110502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 501964 503738 . - . ID=Physo110502.2;Parent=Physo110502;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_3 . CDS 502299 503645 . - 0 ID=Physo110502;Parent=Physo110502;rank=1 scaffold_3 . exon 503840 503851 . - . ID=Physo110502.1;Parent=Physo110502;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 497573 501154 . - . ID=Physo127921;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30130;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 497573 501154 . - . ID=Physo127921;Parent=Physo127921;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 497573 501154 . - 0 ID=Physo127921;Parent=Physo127921;rank=1 scaffold_3 . exon 497573 501154 . - . ID=Physo127921.1;Parent=Physo127921;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 506789 507874 . + . ID=Physo127923;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30132;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 506789 507874 . + . ID=Physo127923;Parent=Physo127923;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 506789 506975 . + 0 ID=Physo127923;Parent=Physo127923;rank=1 scaffold_3 . exon 506789 506975 . + . ID=Physo127923.1;Parent=Physo127923;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 507233 507487 . + 0 ID=Physo127923;Parent=Physo127923;rank=2 scaffold_3 . exon 507233 507487 . + . ID=Physo127923.2;Parent=Physo127923;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 507519 507702 . + 0 ID=Physo127923;Parent=Physo127923;rank=3 scaffold_3 . CDS 507862 507874 . + 0 ID=Physo127923;Parent=Physo127923;rank=4 scaffold_3 . biological_region 509174 509175 0.999 + . logic_name=eponine scaffold_3 . biological_region 510684 510684 0.999 + . logic_name=eponine scaffold_3 . biological_region 510805 510806 0.999 + . logic_name=eponine scaffold_3 . biological_region 517057 517059 0.999 - . logic_name=eponine scaffold_3 . exon 507519 507702 . + . ID=Physo127923.3;Parent=Physo127923;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . exon 507862 507874 . + . ID=Physo127923.4;Parent=Physo127923;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . repeat_region 518691 518733 . ? . description=trf scaffold_3 . repeat_region 518691 518744 . ? . description=trf scaffold_3 . repeat_region 518694 518744 . ? . description=dust scaffold_3 . repeat_region 518694 518744 . ? . description=trf scaffold_3 . repeat_region 521222 521229 . ? . description=dust scaffold_3 . repeat_region 522530 522594 . ? . description=trf scaffold_3 . repeat_region 523184 523239 . ? . description=trf scaffold_3 . repeat_region 523223 523291 . ? . description=trf scaffold_3 . repeat_region 523270 523314 . ? . description=trf scaffold_3 . repeat_region 525446 525458 . ? . description=dust scaffold_3 . repeat_region 525810 525819 . ? . description=dust scaffold_3 ensembl protein_coding_gene 522121 523263 . - . ID=Physo127924;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30133;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 522121 523263 . - . ID=Physo127924;Parent=Physo127924;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 522121 522210 . - 0 ID=Physo127924;Parent=Physo127924;rank=3 scaffold_3 . exon 522121 522210 . - . ID=Physo127924.3;Parent=Physo127924;constitutive=1;rank=3 scaffold_3 . CDS 522471 522694 . - 0 ID=Physo127924;Parent=Physo127924;rank=2 scaffold_3 . exon 522471 522694 . - . ID=Physo127924.2;Parent=Physo127924;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 523080 523263 . - 0 ID=Physo127924;Parent=Physo127924;rank=1 scaffold_3 . exon 523080 523263 . - . ID=Physo127924.1;Parent=Physo127924;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 525857 526756 . - . ID=Physo127925;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30134;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 525857 526756 . - . ID=Physo127925;Parent=Physo127925;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 525857 526563 . - 0 ID=Physo127925;Parent=Physo127925;rank=2 scaffold_3 . exon 525857 526563 . - . ID=Physo127925.2;Parent=Physo127925;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 526696 526756 . - 0 ID=Physo127925;Parent=Physo127925;rank=1 scaffold_3 . exon 526696 526756 . - . ID=Physo127925.1;Parent=Physo127925;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . repeat_region 539381 539425 . ? . description=dust scaffold_3 . repeat_region 539719 539759 . ? . description=trf scaffold_3 . repeat_region 539720 539760 . ? . description=trf scaffold_3 . biological_region 540269 540273 0.999 - . logic_name=eponine scaffold_3 . repeat_region 541058 541112 . ? . description=dust scaffold_3 . repeat_region 541059 541112 . ? . description=trf scaffold_3 . repeat_region 541059 541119 . + . description=(TCTG)n scaffold_3 . repeat_region 543592 543599 . ? . description=dust scaffold_3 . biological_region 547288 547291 0.999 - . logic_name=eponine scaffold_3 . repeat_region 549183 551553 . - . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 552509 552587 . - . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 556458 556591 . + . description=GypsyPi-1c_I-int scaffold_3 ensembl protein_coding_gene 548382 553346 . - . ID=Physo127926;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30135;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 548382 553346 . - . ID=Physo127926;Parent=Physo127926;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 548382 548691 . - 0 ID=Physo127926;Parent=Physo127926;rank=10 scaffold_3 . exon 548382 548691 . - . ID=Physo127926.10;Parent=Physo127926;constitutive=1;ensembl_phase=2;rank=10 scaffold_3 . CDS 548821 549585 . - 0 ID=Physo127926;Parent=Physo127926;rank=9 scaffold_3 . exon 548821 549585 . - . ID=Physo127926.9;Parent=Physo127926;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_3 . CDS 549754 550108 . - 0 ID=Physo127926;Parent=Physo127926;rank=8 scaffold_3 . exon 549754 550108 . - . ID=Physo127926.8;Parent=Physo127926;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_3 . CDS 550146 550521 . - 0 ID=Physo127926;Parent=Physo127926;rank=7 scaffold_3 . exon 550146 550521 . - . ID=Physo127926.7;Parent=Physo127926;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_3 . CDS 550560 551432 . - 0 ID=Physo127926;Parent=Physo127926;rank=6 scaffold_3 . exon 550560 551432 . - . ID=Physo127926.6;Parent=Physo127926;constitutive=1;rank=6 scaffold_3 . CDS 551497 551780 . - 0 ID=Physo127926;Parent=Physo127926;rank=5 scaffold_3 . exon 551497 551780 . - . ID=Physo127926.5;Parent=Physo127926;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 552048 552270 . - 0 ID=Physo127926;Parent=Physo127926;rank=4 scaffold_3 . exon 552048 552270 . - . ID=Physo127926.4;Parent=Physo127926;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . CDS 552604 552785 . - 0 ID=Physo127926;Parent=Physo127926;rank=3 scaffold_3 . exon 552604 552785 . - . ID=Physo127926.3;Parent=Physo127926;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 552973 553039 . - 0 ID=Physo127926;Parent=Physo127926;rank=2 scaffold_3 . exon 552973 553039 . - . ID=Physo127926.2;Parent=Physo127926;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 553254 553346 . - 0 ID=Physo127926;Parent=Physo127926;rank=1 scaffold_3 . exon 553254 553346 . - . ID=Physo127926.1;Parent=Physo127926;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 555994 557327 . - . ID=Physo127927;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30136;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 555994 557327 . - . ID=Physo127927;Parent=Physo127927;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 555994 556149 . - 0 ID=Physo127927;Parent=Physo127927;rank=3 scaffold_3 . exon 555994 556149 . - . ID=Physo127927.3;Parent=Physo127927;constitutive=1;rank=3 scaffold_3 . CDS 556258 556487 . - 0 ID=Physo127927;Parent=Physo127927;rank=2 scaffold_3 . exon 556258 556487 . - . ID=Physo127927.2;Parent=Physo127927;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 556655 557327 . - 0 ID=Physo127927;Parent=Physo127927;rank=1 scaffold_3 . exon 556655 557327 . - . ID=Physo127927.1;Parent=Physo127927;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . biological_region 557300 557302 0.999 - . logic_name=eponine scaffold_3 . biological_region 557472 557477 0.999 + . logic_name=eponine scaffold_3 . biological_region 557559 557560 0.999 + . logic_name=eponine scaffold_3 . biological_region 557608 557613 0.999 + . logic_name=eponine scaffold_3 . repeat_region 557878 557900 . ? . description=trf scaffold_3 . biological_region 559083 559090 0.999 - . logic_name=eponine scaffold_3 . biological_region 562392 562395 0.999 - . logic_name=eponine scaffold_3 . repeat_region 564667 564677 . ? . description=dust scaffold_3 . biological_region 566099 566101 0.999 + . logic_name=eponine scaffold_3 . biological_region 566623 566626 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 561106 561504 . - . ID=Physo110507;biotype=protein_coding;external_name=estExt_Genewise1.C_30037;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 561106 561504 . - . ID=Physo110507;Parent=Physo110507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 561106 561432 . - 0 ID=Physo110507;Parent=Physo110507;rank=1 scaffold_3 . exon 561106 561504 . - . ID=Physo110507.1;Parent=Physo110507;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 561760 563996 . - . ID=Physo127928;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30137;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 561760 563996 . - . ID=Physo127928;Parent=Physo127928;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 561760 562202 . - 0 ID=Physo127928;Parent=Physo127928;rank=3 scaffold_3 . exon 561760 562202 . - . ID=Physo127928.3;Parent=Physo127928;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 562295 562874 . - 0 ID=Physo127928;Parent=Physo127928;rank=2 scaffold_3 . exon 562295 562874 . - . ID=Physo127928.2;Parent=Physo127928;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 563211 563996 . - 0 ID=Physo127928;Parent=Physo127928;rank=1 scaffold_3 . exon 563211 563996 . - . ID=Physo127928.1;Parent=Physo127928;constitutive=1;rank=1 scaffold_3 . repeat_region 575095 588041 . ? . description=dust scaffold_3 . biological_region 589378 589381 0.999 - . logic_name=eponine scaffold_3 . biological_region 589566 589570 0.999 + . logic_name=eponine scaffold_3 . biological_region 589624 589626 0.999 - . logic_name=eponine scaffold_3 . repeat_region 590047 590083 . ? . description=trf scaffold_3 . biological_region 593558 593559 0.999 + . logic_name=eponine scaffold_3 . biological_region 594587 594593 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 589251 589805 . + . ID=Physo110508;biotype=protein_coding;external_name=estExt_Genewise1.C_30038;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 589251 589805 . + . ID=Physo110508;Parent=Physo110508;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 589251 589805 . + . ID=Physo110508.1;Parent=Physo110508;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 589253 589804 . + 0 ID=Physo110508;Parent=Physo110508;rank=1 scaffold_3 ensembl protein_coding_gene 591913 593678 . - . ID=Physo127930;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30139;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 591913 593678 . - . ID=Physo127930;Parent=Physo127930;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 591913 593678 . - . ID=Physo127930.1;Parent=Physo127930;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 . CDS 592092 593678 . - 0 ID=Physo127930;Parent=Physo127930;rank=1 scaffold_3 ensembl protein_coding_gene 593951 595519 . - . ID=Physo127931;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30140;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 593951 595519 . - . ID=Physo127931;Parent=Physo127931;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 593951 595519 . - 0 ID=Physo127931;Parent=Physo127931;rank=1 scaffold_3 . exon 593951 595519 . - . ID=Physo127931.1;Parent=Physo127931;constitutive=1;rank=1 scaffold_3 . repeat_region 597362 597369 . ? . description=dust scaffold_3 . repeat_region 605293 605301 . ? . description=dust scaffold_3 ensembl protein_coding_gene 598178 599743 . - . ID=Physo127932;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30141;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 598178 599743 . - . ID=Physo127932;Parent=Physo127932;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 598178 599743 . - 0 ID=Physo127932;Parent=Physo127932;rank=1 scaffold_3 . exon 598178 599743 . - . ID=Physo127932.1;Parent=Physo127932;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 601621 603296 . - . ID=Physo127933;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30142;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 601621 603296 . - . ID=Physo127933;Parent=Physo127933;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 601621 602271 . - 0 ID=Physo127933;Parent=Physo127933;rank=3 scaffold_3 . exon 601621 602271 . - . ID=Physo127933.3;Parent=Physo127933;constitutive=1;rank=3 scaffold_3 . CDS 602344 602833 . - 0 ID=Physo127933;Parent=Physo127933;rank=2 scaffold_3 . exon 602344 602833 . - . ID=Physo127933.2;Parent=Physo127933;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 602905 603296 . - 0 ID=Physo127933;Parent=Physo127933;rank=1 scaffold_3 . exon 602905 603296 . - . ID=Physo127933.1;Parent=Physo127933;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . repeat_region 607382 611559 . + . description=Polinton-1_PI scaffold_3 ensembl protein_coding_gene 607994 609673 . + . ID=Physo127934;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30143;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 607994 609673 . + . ID=Physo127934;Parent=Physo127934;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 607994 609673 . + 0 ID=Physo127934;Parent=Physo127934;rank=1 scaffold_3 . exon 607994 609673 . + . ID=Physo127934.1;Parent=Physo127934;constitutive=1;rank=1 scaffold_3 . repeat_region 611562 618534 . ? . description=dust scaffold_3 . repeat_region 618535 621525 . ? . description=dust scaffold_3 . repeat_region 622182 622190 . ? . description=dust scaffold_3 . repeat_region 622940 622986 . ? . description=dust scaffold_3 . repeat_region 622943 622986 . ? . description=trf scaffold_3 . repeat_region 626255 626266 . ? . description=dust scaffold_3 . biological_region 629798 629801 0.999 + . logic_name=eponine scaffold_3 . biological_region 629870 629874 0.999 - . logic_name=eponine scaffold_3 . biological_region 630654 630656 0.999 + . logic_name=eponine scaffold_3 . biological_region 634519 634521 0.999 + . logic_name=eponine scaffold_3 . repeat_region 635348 635493 . + . description=(CGA)n scaffold_3 ensembl protein_coding_gene 627494 628354 . - . ID=Physo110514;biotype=protein_coding;external_name=estExt_Genewise1.C_30044;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 627494 628354 . - . ID=Physo110514;Parent=Physo110514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 627494 627884 . - . ID=Physo110514.2;Parent=Physo110514;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_3 . CDS 627847 627884 . - 0 ID=Physo110514;Parent=Physo110514;rank=2 scaffold_3 . CDS 627965 628142 . - 0 ID=Physo110514;Parent=Physo110514;rank=1 scaffold_3 . exon 627965 628354 . - . ID=Physo110514.1;Parent=Physo110514;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 629622 635619 . + . ID=Physo127935;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30144;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 629622 635619 . + . ID=Physo127935;Parent=Physo127935;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 629622 629672 . + 0 ID=Physo127935;Parent=Physo127935;rank=1 scaffold_3 . exon 629622 629672 . + . ID=Physo127935.1;Parent=Physo127935;constitutive=1;rank=1 scaffold_3 . CDS 629713 633987 . + 0 ID=Physo127935;Parent=Physo127935;rank=2 scaffold_3 . exon 629713 633987 . + . ID=Physo127935.2;Parent=Physo127935;constitutive=1;rank=2 scaffold_3 . CDS 634062 635543 . + 0 ID=Physo127935;Parent=Physo127935;rank=3 scaffold_3 . exon 634062 635619 . + . ID=Physo127935.3;Parent=Physo127935;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_3 . repeat_region 636978 636985 . ? . description=dust scaffold_3 . repeat_region 637571 637634 . ? . description=dust scaffold_3 . repeat_region 641221 641261 . ? . description=trf scaffold_3 . repeat_region 641395 641442 . ? . description=dust scaffold_3 . repeat_region 641955 641963 . ? . description=dust scaffold_3 . repeat_region 646486 646493 . ? . description=dust scaffold_3 ensembl protein_coding_gene 639098 640122 . - . ID=Physo127937;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30146;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 639098 640122 . - . ID=Physo127937;Parent=Physo127937;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 639098 639404 . - . ID=Physo127937.3;Parent=Physo127937;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_3 . CDS 639214 639404 . - 0 ID=Physo127937;Parent=Physo127937;rank=3 scaffold_3 . CDS 639489 639645 . - 0 ID=Physo127937;Parent=Physo127937;rank=2 scaffold_3 . exon 639489 639645 . - . ID=Physo127937.2;Parent=Physo127937;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 639712 640122 . - 0 ID=Physo127937;Parent=Physo127937;rank=1 scaffold_3 . exon 639712 640122 . - . ID=Physo127937.1;Parent=Physo127937;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 640149 641628 . - . ID=Physo127938;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30147;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 640149 641628 . - . ID=Physo127938;Parent=Physo127938;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 640149 641270 . - . ID=Physo127938.2;Parent=Physo127938;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_3 . CDS 640368 641270 . - 0 ID=Physo127938;Parent=Physo127938;rank=2 scaffold_3 . CDS 641353 641628 . - 0 ID=Physo127938;Parent=Physo127938;rank=1 scaffold_3 . exon 641353 641628 . - . ID=Physo127938.1;Parent=Physo127938;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 642012 643300 . - . ID=Physo127939;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30148;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 642012 643300 . - . ID=Physo127939;Parent=Physo127939;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 642012 642947 . - . ID=Physo127939.2;Parent=Physo127939;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_3 . CDS 642063 642947 . - 0 ID=Physo127939;Parent=Physo127939;rank=2 scaffold_3 . CDS 643028 643300 . - 0 ID=Physo127939;Parent=Physo127939;rank=1 scaffold_3 . exon 643028 643300 . - . ID=Physo127939.1;Parent=Physo127939;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 637752 639099 . + . ID=Physo155379;biotype=protein_coding;external_name=C_scaffold_3000049;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 637752 639099 . + . ID=Physo155379;Parent=Physo155379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 637752 637965 . + 0 ID=Physo155379;Parent=Physo155379;rank=1 scaffold_3 . exon 637752 637965 . + . ID=Physo155379.1;Parent=Physo155379;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 638072 638292 . + 0 ID=Physo155379;Parent=Physo155379;rank=2 scaffold_3 . exon 638072 638292 . + . ID=Physo155379.2;Parent=Physo155379;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 638317 639099 . + 0 ID=Physo155379;Parent=Physo155379;rank=3 scaffold_3 . exon 638317 639099 . + . ID=Physo155379.3;Parent=Physo155379;constitutive=1;rank=3 scaffold_3 . biological_region 648470 648473 0.999 + . logic_name=eponine scaffold_3 . biological_region 648526 648531 0.999 + . logic_name=eponine scaffold_3 . biological_region 650613 650617 0.999 + . logic_name=eponine scaffold_3 . biological_region 652530 652533 0.999 - . logic_name=eponine scaffold_3 . biological_region 654539 654541 0.999 + . logic_name=eponine scaffold_3 . biological_region 654563 654568 0.999 - . logic_name=eponine scaffold_3 . biological_region 654608 654611 0.999 - . logic_name=eponine scaffold_3 . biological_region 654632 654633 0.999 - . logic_name=eponine scaffold_3 . biological_region 654775 654777 0.999 - . logic_name=eponine scaffold_3 . biological_region 654830 654837 0.999 + . logic_name=eponine scaffold_3 . biological_region 656007 656013 0.999 + . logic_name=eponine scaffold_3 . biological_region 656060 656061 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 648659 650052 . + . ID=Physo127940;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30149;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 648659 650052 . + . ID=Physo127940;Parent=Physo127940;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 648659 649939 . + 0 ID=Physo127940;Parent=Physo127940;rank=1 scaffold_3 . exon 648659 650052 . + . ID=Physo127940.1;Parent=Physo127940;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 650360 651442 . + . ID=Physo127941;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30150;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 650360 651442 . + . ID=Physo127941;Parent=Physo127941;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 650360 651442 . + 0 ID=Physo127941;Parent=Physo127941;rank=1 scaffold_3 . exon 650360 651442 . + . ID=Physo127941.1;Parent=Physo127941;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 652979 654059 . + . ID=Physo127942;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30151;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 652979 654059 . + . ID=Physo127942;Parent=Physo127942;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 652979 653233 . + 0 ID=Physo127942;Parent=Physo127942;rank=1 scaffold_3 . exon 652979 653233 . + . ID=Physo127942.1;Parent=Physo127942;constitutive=1;rank=1 scaffold_3 . CDS 653312 653930 . + 0 ID=Physo127942;Parent=Physo127942;rank=2 scaffold_3 . exon 653312 653930 . + . ID=Physo127942.2;Parent=Physo127942;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 654010 654059 . + 0 ID=Physo127942;Parent=Physo127942;rank=3 scaffold_3 . exon 654010 654059 . + . ID=Physo127942.3;Parent=Physo127942;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 ensembl protein_coding_gene 654134 655586 . - . ID=Physo127943;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30152;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 654134 655586 . - . ID=Physo127943;Parent=Physo127943;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 654134 654317 . - 0 ID=Physo127943;Parent=Physo127943;rank=5 scaffold_3 . exon 654134 654317 . - . ID=Physo127943.5;Parent=Physo127943;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 654387 655104 . - 0 ID=Physo127943;Parent=Physo127943;rank=4 scaffold_3 . exon 654387 655104 . - . ID=Physo127943.4;Parent=Physo127943;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_3 . CDS 655194 655296 . - 0 ID=Physo127943;Parent=Physo127943;rank=3 scaffold_3 . exon 655194 655296 . - . ID=Physo127943.3;Parent=Physo127943;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 655372 655461 . - 0 ID=Physo127943;Parent=Physo127943;rank=2 scaffold_3 . exon 655372 655461 . - . ID=Physo127943.2;Parent=Physo127943;constitutive=1;rank=2 scaffold_3 . CDS 655542 655586 . - 0 ID=Physo127943;Parent=Physo127943;rank=1 scaffold_3 . exon 655542 655586 . - . ID=Physo127943.1;Parent=Physo127943;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 655979 656335 . - . ID=Physo127944;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30153;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 655979 656335 . - . ID=Physo127944;Parent=Physo127944;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 655979 656335 . - 0 ID=Physo127944;Parent=Physo127944;rank=1 scaffold_3 . exon 655979 656335 . - . ID=Physo127944.1;Parent=Physo127944;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 656780 658020 . + . ID=Physo127945;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30154;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 656780 658020 . + . ID=Physo127945;Parent=Physo127945;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 656780 657853 . + 0 ID=Physo127945;Parent=Physo127945;rank=1 scaffold_3 . exon 656780 658020 . + . ID=Physo127945.1;Parent=Physo127945;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 658339 660174 . - . ID=Physo127946;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30155;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 658339 660174 . - . ID=Physo127946;Parent=Physo127946;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 658339 660174 . - 0 ID=Physo127946;Parent=Physo127946;rank=1 scaffold_3 . exon 658339 660174 . - . ID=Physo127946.1;Parent=Physo127946;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 661109 664534 . + . ID=Physo127947;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30156;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 661109 664534 . + . ID=Physo127947;Parent=Physo127947;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 661109 664534 . + 0 ID=Physo127947;Parent=Physo127947;rank=1 scaffold_3 . exon 661109 664534 . + . ID=Physo127947.1;Parent=Physo127947;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 664682 667569 . - . ID=Physo127948;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30157;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 664682 667569 . - . ID=Physo127948;Parent=Physo127948;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 664682 665690 . - 0 ID=Physo127948;Parent=Physo127948;rank=2 scaffold_3 . exon 664682 665690 . - . ID=Physo127948.2;Parent=Physo127948;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 665789 667569 . - 0 ID=Physo127948;Parent=Physo127948;rank=1 scaffold_3 . exon 665789 667569 . - . ID=Physo127948.1;Parent=Physo127948;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . biological_region 669414 669415 0.999 - . logic_name=eponine scaffold_3 . biological_region 670004 670004 0.999 + . logic_name=eponine scaffold_3 . biological_region 671492 671497 0.999 + . logic_name=eponine scaffold_3 . biological_region 671547 671547 0.999 - . logic_name=eponine scaffold_3 . biological_region 671600 671602 0.999 + . logic_name=eponine scaffold_3 . biological_region 671606 671609 0.999 - . logic_name=eponine scaffold_3 . biological_region 671656 671661 0.999 - . logic_name=eponine scaffold_3 . biological_region 671659 671661 0.999 + . logic_name=eponine scaffold_3 . repeat_region 671705 671734 . ? . description=trf scaffold_3 . repeat_region 671705 671744 . ? . description=trf scaffold_3 . biological_region 671911 671914 0.999 - . logic_name=eponine scaffold_3 . biological_region 673227 673228 0.999 + . logic_name=eponine scaffold_3 . biological_region 674141 674145 0.999 - . logic_name=eponine scaffold_3 . biological_region 674187 674190 0.999 - . logic_name=eponine scaffold_3 . repeat_region 674333 674380 . ? . description=dust scaffold_3 . biological_region 674499 674500 0.999 + . logic_name=eponine scaffold_3 . biological_region 674897 674901 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 668343 671011 . + . ID=Physo127949;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30158;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 668343 671011 . + . ID=Physo127949;Parent=Physo127949;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 668343 670655 . + 0 ID=Physo127949;Parent=Physo127949;rank=1 scaffold_3 . exon 668343 670655 . + . ID=Physo127949.1;Parent=Physo127949;constitutive=1;rank=1 scaffold_3 . CDS 670742 671011 . + 0 ID=Physo127949;Parent=Physo127949;rank=2 scaffold_3 . exon 670742 671011 . + . ID=Physo127949.2;Parent=Physo127949;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 671397 672877 . + . ID=Physo127950;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30159;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 671397 672877 . + . ID=Physo127950;Parent=Physo127950;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 671397 672513 . + 0 ID=Physo127950;Parent=Physo127950;rank=1 scaffold_3 . exon 671397 672513 . + . ID=Physo127950.1;Parent=Physo127950;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 672591 672877 . + 0 ID=Physo127950;Parent=Physo127950;rank=2 scaffold_3 . exon 672591 672877 . + . ID=Physo127950.2;Parent=Physo127950;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 673220 674401 . - . ID=Physo127951;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30160;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 673220 674401 . - . ID=Physo127951;Parent=Physo127951;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 673220 674401 . - 0 ID=Physo127951;Parent=Physo127951;rank=1 scaffold_3 . exon 673220 674401 . - . ID=Physo127951.1;Parent=Physo127951;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 674803 679115 . + . ID=Physo127952;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30161;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 674803 679115 . + . ID=Physo127952;Parent=Physo127952;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 674803 674907 . + 0 ID=Physo127952;Parent=Physo127952;rank=1 scaffold_3 . exon 674803 674907 . + . ID=Physo127952.1;Parent=Physo127952;constitutive=1;rank=1 scaffold_3 . CDS 674992 678882 . + 0 ID=Physo127952;Parent=Physo127952;rank=2 scaffold_3 . exon 674992 678882 . + . ID=Physo127952.2;Parent=Physo127952;constitutive=1;rank=2 scaffold_3 . CDS 678948 679115 . + 0 ID=Physo127952;Parent=Physo127952;rank=3 scaffold_3 . exon 678948 679115 . + . ID=Physo127952.3;Parent=Physo127952;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 679298 680355 . - . ID=Physo127953;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30162;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 679298 680355 . - . ID=Physo127953;Parent=Physo127953;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 679298 680087 . - 0 ID=Physo127953;Parent=Physo127953;rank=2 scaffold_3 . exon 679298 680087 . - . ID=Physo127953.2;Parent=Physo127953;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 680171 680355 . - 0 ID=Physo127953;Parent=Physo127953;rank=1 scaffold_3 . exon 680171 680355 . - . ID=Physo127953.1;Parent=Physo127953;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 681141 682346 . + . ID=Physo127954;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30163;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 681141 682346 . + . ID=Physo127954;Parent=Physo127954;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 681141 682346 . + 0 ID=Physo127954;Parent=Physo127954;rank=1 scaffold_3 . exon 681141 682346 . + . ID=Physo127954.1;Parent=Physo127954;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 682550 683218 . - . ID=Physo127955;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30164;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 682550 683218 . - . ID=Physo127955;Parent=Physo127955;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 682550 683218 . - 0 ID=Physo127955;Parent=Physo127955;rank=1 scaffold_3 . exon 682550 683218 . - . ID=Physo127955.1;Parent=Physo127955;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 684202 688227 . + . ID=Physo155386;biotype=protein_coding;external_name=C_scaffold_3000056;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 684202 688227 . + . ID=Physo155386;Parent=Physo155386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 684202 685367 . + 0 ID=Physo155386;Parent=Physo155386;rank=1 scaffold_3 . exon 684202 685367 . + . ID=Physo155386.1;Parent=Physo155386;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 685509 686056 . + 0 ID=Physo155386;Parent=Physo155386;rank=2 scaffold_3 . exon 685509 686056 . + . ID=Physo155386.2;Parent=Physo155386;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 686114 686162 . + 0 ID=Physo155386;Parent=Physo155386;rank=3 scaffold_3 . exon 686114 686162 . + . ID=Physo155386.3;Parent=Physo155386;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . CDS 686226 686495 . + 0 ID=Physo155386;Parent=Physo155386;rank=4 scaffold_3 . exon 686226 686495 . + . ID=Physo155386.4;Parent=Physo155386;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_3 . CDS 686544 687032 . + 0 ID=Physo155386;Parent=Physo155386;rank=5 scaffold_3 . exon 686544 687032 . + . ID=Physo155386.5;Parent=Physo155386;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_3 . CDS 687150 687214 . + 0 ID=Physo155386;Parent=Physo155386;rank=6 scaffold_3 . CDS 687278 687484 . + 0 ID=Physo155386;Parent=Physo155386;rank=7 scaffold_3 . CDS 687518 687771 . + 0 ID=Physo155386;Parent=Physo155386;rank=8 scaffold_3 . CDS 687838 688227 . + 0 ID=Physo155386;Parent=Physo155386;rank=9 scaffold_3 . biological_region 686674 686675 0.999 + . logic_name=eponine scaffold_3 . biological_region 689092 689097 0.999 + . logic_name=eponine scaffold_3 . biological_region 689173 689177 0.999 + . logic_name=eponine scaffold_3 . biological_region 689524 689525 0.999 + . logic_name=eponine scaffold_3 . biological_region 689568 689569 0.999 + . logic_name=eponine scaffold_3 . biological_region 689599 689602 0.999 - . logic_name=eponine scaffold_3 . biological_region 689657 689658 0.999 + . logic_name=eponine scaffold_3 . biological_region 689765 689768 0.999 - . logic_name=eponine scaffold_3 . biological_region 690383 690387 0.999 + . logic_name=eponine scaffold_3 . biological_region 690399 690407 0.999 - . logic_name=eponine scaffold_3 . biological_region 692912 692914 0.999 - . logic_name=eponine scaffold_3 . biological_region 693315 693315 0.999 - . logic_name=eponine scaffold_3 . biological_region 693413 693419 0.999 - . logic_name=eponine scaffold_3 . biological_region 693416 693420 0.999 + . logic_name=eponine scaffold_3 . biological_region 694369 694372 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 688310 690538 . - . ID=Physo127957;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30166;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 688310 690538 . - . ID=Physo127957;Parent=Physo127957;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 688310 690538 . - 0 ID=Physo127957;Parent=Physo127957;rank=1 scaffold_3 . exon 688310 690538 . - . ID=Physo127957.1;Parent=Physo127957;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 691623 694503 . - . ID=Physo127958;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30167;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 691623 694503 . - . ID=Physo127958;Parent=Physo127958;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 691623 693975 . - 0 ID=Physo127958;Parent=Physo127958;rank=2 scaffold_3 . exon 691623 693975 . - . ID=Physo127958.2;Parent=Physo127958;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 694358 694503 . - 0 ID=Physo127958;Parent=Physo127958;rank=1 scaffold_3 . exon 694358 694503 . - . ID=Physo127958.1;Parent=Physo127958;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . exon 687150 687214 . + . ID=Physo155386.6;Parent=Physo155386;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_3 . exon 687278 687484 . + . ID=Physo155386.7;Parent=Physo155386;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_3 . exon 687518 687771 . + . ID=Physo155386.8;Parent=Physo155386;constitutive=1;ensembl_phase=1;rank=8 scaffold_3 . exon 687838 688227 . + . ID=Physo155386.9;Parent=Physo155386;constitutive=1;rank=9 scaffold_3 . repeat_region 697457 697523 . ? . description=trf scaffold_3 . repeat_region 698062 698111 . ? . description=trf scaffold_3 . repeat_region 698086 698148 . ? . description=trf scaffold_3 . repeat_region 698101 698160 . ? . description=trf scaffold_3 . repeat_region 698207 698366 . ? . description=trf scaffold_3 . repeat_region 698484 698560 . ? . description=trf scaffold_3 . repeat_region 698485 698536 . ? . description=trf scaffold_3 . repeat_region 700202 700250 . ? . description=trf scaffold_3 . repeat_region 700864 700900 . ? . description=trf scaffold_3 . repeat_region 702554 702589 . ? . description=trf scaffold_3 ensembl protein_coding_gene 698471 699534 . - . ID=Physo127959;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30168;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 698471 699534 . - . ID=Physo127959;Parent=Physo127959;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 698471 698824 . - 0 ID=Physo127959;Parent=Physo127959;rank=3 scaffold_3 . exon 698471 698824 . - . ID=Physo127959.3;Parent=Physo127959;constitutive=1;rank=3 scaffold_3 . CDS 698844 698860 . - 0 ID=Physo127959;Parent=Physo127959;rank=2 scaffold_3 . exon 698844 698860 . - . ID=Physo127959.2;Parent=Physo127959;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 698904 699534 . - 0 ID=Physo127959;Parent=Physo127959;rank=1 scaffold_3 . exon 698904 699534 . - . ID=Physo127959.1;Parent=Physo127959;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 701518 702940 . - . ID=Physo127960;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30169;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 701518 702940 . - . ID=Physo127960;Parent=Physo127960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 701518 702773 . - 0 ID=Physo127960;Parent=Physo127960;rank=2 scaffold_3 . exon 701518 702773 . - . ID=Physo127960.2;Parent=Physo127960;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 702796 702940 . - 0 ID=Physo127960;Parent=Physo127960;rank=1 scaffold_3 . exon 702796 702940 . - . ID=Physo127960.1;Parent=Physo127960;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 704050 705084 . - . ID=Physo127961;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30170;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 704050 705084 . - . ID=Physo127961;Parent=Physo127961;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 704050 704526 . - 0 ID=Physo127961;Parent=Physo127961;rank=3 scaffold_3 . exon 704050 704526 . - . ID=Physo127961.3;Parent=Physo127961;constitutive=1;rank=3 scaffold_3 . CDS 704589 704897 . - 0 ID=Physo127961;Parent=Physo127961;rank=2 scaffold_3 . exon 704589 704897 . - . ID=Physo127961.2;Parent=Physo127961;constitutive=1;rank=2 scaffold_3 . CDS 704968 705084 . - 0 ID=Physo127961;Parent=Physo127961;rank=1 scaffold_3 . exon 704968 705084 . - . ID=Physo127961.1;Parent=Physo127961;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 705972 707119 . + . ID=Physo127962;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30171;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 705972 707119 . + . ID=Physo127962;Parent=Physo127962;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 705972 706980 . + 0 ID=Physo127962;Parent=Physo127962;rank=1 scaffold_3 . exon 705972 706980 . + . ID=Physo127962.1;Parent=Physo127962;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 707109 707119 . + 0 ID=Physo127962;Parent=Physo127962;rank=2 scaffold_3 . biological_region 707454 707457 0.999 + . logic_name=eponine scaffold_3 . biological_region 707686 707694 0.999 - . logic_name=eponine scaffold_3 . biological_region 707708 707713 0.999 - . logic_name=eponine scaffold_3 . biological_region 707745 707749 0.999 - . logic_name=eponine scaffold_3 . biological_region 707771 707773 0.999 + . logic_name=eponine scaffold_3 . biological_region 707822 707829 0.999 - . logic_name=eponine scaffold_3 . exon 707109 707119 . + . ID=Physo127962.2;Parent=Physo127962;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 707430 708181 . + . ID=Physo127963;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30172;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 707430 708181 . + . ID=Physo127963;Parent=Physo127963;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 707430 708101 . + 0 ID=Physo127963;Parent=Physo127963;rank=1 scaffold_3 . exon 707430 708101 . + . ID=Physo127963.1;Parent=Physo127963;constitutive=1;rank=1 scaffold_3 . CDS 708173 708181 . + 0 ID=Physo127963;Parent=Physo127963;rank=2 scaffold_3 . exon 708173 708181 . + . ID=Physo127963.2;Parent=Physo127963;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 726198 729786 . + . ID=Physo127964;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30173;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 726198 729786 . + . ID=Physo127964;Parent=Physo127964;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 726198 727466 . + 0 ID=Physo127964;Parent=Physo127964;rank=1 scaffold_3 . exon 726198 727466 . + . ID=Physo127964.1;Parent=Physo127964;constitutive=1;rank=1 scaffold_3 . CDS 727953 728073 . + 0 ID=Physo127964;Parent=Physo127964;rank=2 scaffold_3 . CDS 728130 728172 . + 0 ID=Physo127964;Parent=Physo127964;rank=3 scaffold_3 . CDS 728261 728379 . + 0 ID=Physo127964;Parent=Physo127964;rank=4 scaffold_3 . CDS 728447 729786 . + 0 ID=Physo127964;Parent=Physo127964;rank=5 scaffold_3 . biological_region 729103 729107 0.999 + . logic_name=eponine scaffold_3 . biological_region 729525 729528 0.999 + . logic_name=eponine scaffold_3 . biological_region 729578 729579 0.999 + . logic_name=eponine scaffold_3 . biological_region 730581 730585 0.999 + . logic_name=eponine scaffold_3 . biological_region 730617 730620 0.999 - . logic_name=eponine scaffold_3 . biological_region 730644 730646 0.999 - . logic_name=eponine scaffold_3 . repeat_region 731077 731084 . ? . description=dust scaffold_3 . biological_region 732769 732771 0.999 + . logic_name=eponine scaffold_3 . biological_region 733136 733139 0.999 + . logic_name=eponine scaffold_3 . biological_region 733230 733233 0.999 - . logic_name=eponine scaffold_3 . biological_region 733285 733291 0.999 + . logic_name=eponine scaffold_3 . biological_region 733625 733628 0.999 - . logic_name=eponine scaffold_3 . biological_region 733751 733753 0.999 + . logic_name=eponine scaffold_3 . biological_region 733784 733788 0.999 - . logic_name=eponine scaffold_3 . repeat_region 733953 733995 . ? . description=trf scaffold_3 . repeat_region 733968 733995 . ? . description=dust scaffold_3 ensembl protein_coding_gene 735786 737066 . + . ID=Physo108222;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30011;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 735786 737066 . + . ID=Physo108222;Parent=Physo108222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 735786 737066 . + 0 ID=Physo108222;Parent=Physo108222;rank=1 scaffold_3 . exon 735786 737066 . + . ID=Physo108222.1;Parent=Physo108222;constitutive=1;rank=1 scaffold_3 . exon 727953 728073 . + . ID=Physo127964.2;Parent=Physo127964;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . exon 728130 728172 . + . ID=Physo127964.3;Parent=Physo127964;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . exon 728261 728379 . + . ID=Physo127964.4;Parent=Physo127964;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_3 . exon 728447 729786 . + . ID=Physo127964.5;Parent=Physo127964;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 ensembl protein_coding_gene 730521 731063 . - . ID=Physo127965;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30174;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 730521 731063 . - . ID=Physo127965;Parent=Physo127965;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 730521 731063 . - 0 ID=Physo127965;Parent=Physo127965;rank=1 scaffold_3 . exon 730521 731063 . - . ID=Physo127965.1;Parent=Physo127965;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 733074 734981 . + . ID=Physo127966;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30175;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 733074 734981 . + . ID=Physo127966;Parent=Physo127966;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 733074 734981 . + 0 ID=Physo127966;Parent=Physo127966;rank=1 scaffold_3 . exon 733074 734981 . + . ID=Physo127966.1;Parent=Physo127966;constitutive=1;rank=1 scaffold_3 . repeat_region 741841 742011 . + . description=(CAG)n scaffold_3 . repeat_region 742357 742541 . + . description=(CAG)n scaffold_3 ensembl protein_coding_gene 737290 737801 . - . ID=Physo108223;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30012;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 737290 737801 . - . ID=Physo108223;Parent=Physo108223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 737290 737474 . - . ID=Physo108223.2;Parent=Physo108223;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_3 . CDS 737292 737474 . - 0 ID=Physo108223;Parent=Physo108223;rank=2 scaffold_3 . CDS 737496 737801 . - 0 ID=Physo108223;Parent=Physo108223;rank=1 scaffold_3 . exon 737496 737801 . - . ID=Physo108223.1;Parent=Physo108223;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 738565 743238 . + . ID=Physo127969;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30178;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 738565 743238 . + . ID=Physo127969;Parent=Physo127969;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 738565 738659 . + . ID=Physo127969.1;Parent=Physo127969;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 738657 738659 . + 0 ID=Physo127969;Parent=Physo127969;rank=1 scaffold_3 . CDS 738742 738796 . + 0 ID=Physo127969;Parent=Physo127969;rank=2 scaffold_3 . exon 738742 738796 . + . ID=Physo127969.2;Parent=Physo127969;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 738901 739041 . + 0 ID=Physo127969;Parent=Physo127969;rank=3 scaffold_3 . exon 738901 739041 . + . ID=Physo127969.3;Parent=Physo127969;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 739140 739363 . + 0 ID=Physo127969;Parent=Physo127969;rank=4 scaffold_3 . exon 739140 739363 . + . ID=Physo127969.4;Parent=Physo127969;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 739438 740112 . + 0 ID=Physo127969;Parent=Physo127969;rank=5 scaffold_3 . exon 739438 740112 . + . ID=Physo127969.5;Parent=Physo127969;constitutive=1;rank=5 scaffold_3 . CDS 740181 743156 . + 0 ID=Physo127969;Parent=Physo127969;rank=6 scaffold_3 . exon 740181 743238 . + . ID=Physo127969.6;Parent=Physo127969;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_3 ensembl protein_coding_gene 743331 745007 . - . ID=Physo127970;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30179;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 743331 745007 . - . ID=Physo127970;Parent=Physo127970;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 743331 745007 . - . ID=Physo127970.1;Parent=Physo127970;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 . CDS 743532 745007 . - 0 ID=Physo127970;Parent=Physo127970;rank=1 scaffold_3 . biological_region 746934 746935 0.999 + . logic_name=eponine scaffold_3 . biological_region 747042 747043 0.999 - . logic_name=eponine scaffold_3 . biological_region 747094 747101 0.999 + . logic_name=eponine scaffold_3 . biological_region 747625 747633 0.999 - . logic_name=eponine scaffold_3 . biological_region 747657 747659 0.999 - . logic_name=eponine scaffold_3 . biological_region 748382 748389 0.999 + . logic_name=eponine scaffold_3 . repeat_region 748824 748864 . ? . description=dust scaffold_3 . repeat_region 748827 748865 . ? . description=trf scaffold_3 . repeat_region 748827 748865 . + . description=(CAAGC)n scaffold_3 . repeat_region 749293 749318 . ? . description=trf scaffold_3 . biological_region 749372 749380 0.999 - . logic_name=eponine scaffold_3 . biological_region 749432 749434 0.999 + . logic_name=eponine scaffold_3 . repeat_region 749465 749533 . ? . description=dust scaffold_3 . biological_region 749643 749645 0.999 - . logic_name=eponine scaffold_3 . biological_region 754105 754107 0.999 - . logic_name=eponine scaffold_3 . biological_region 754342 754344 0.999 + . logic_name=eponine scaffold_3 . biological_region 754353 754356 0.999 - . logic_name=eponine scaffold_3 . biological_region 754579 754585 0.999 - . logic_name=eponine scaffold_3 . biological_region 754768 754774 0.999 - . logic_name=eponine scaffold_3 . biological_region 754800 754807 0.999 - . logic_name=eponine scaffold_3 . biological_region 755237 755239 0.999 + . logic_name=eponine scaffold_3 . biological_region 755424 755428 0.999 + . logic_name=eponine scaffold_3 . repeat_region 755427 755474 . ? . description=dust scaffold_3 . biological_region 755427 755435 0.999 - . logic_name=eponine scaffold_3 . biological_region 755482 755492 0.999 + . logic_name=eponine scaffold_3 . biological_region 755491 755493 0.999 - . logic_name=eponine scaffold_3 . biological_region 755509 755518 0.999 + . logic_name=eponine scaffold_3 . biological_region 755570 755574 0.999 - . logic_name=eponine scaffold_3 . biological_region 755575 755580 0.999 + . logic_name=eponine scaffold_3 . biological_region 755592 755600 0.999 - . logic_name=eponine scaffold_3 . biological_region 755625 755632 0.999 - . logic_name=eponine scaffold_3 . biological_region 755647 755651 0.999 + . logic_name=eponine scaffold_3 . biological_region 755717 755719 0.999 - . logic_name=eponine scaffold_3 . biological_region 755737 755744 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 748774 749768 . + . ID=Physo110545;biotype=protein_coding;external_name=estExt_Genewise1.C_30075;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 748774 749768 . + . ID=Physo110545;Parent=Physo110545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 748774 749768 . + . ID=Physo110545.1;Parent=Physo110545;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 748866 749768 . + 0 ID=Physo110545;Parent=Physo110545;rank=1 scaffold_3 ensembl protein_coding_gene 747382 748315 . + . ID=Physo127971;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30180;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 747382 748315 . + . ID=Physo127971;Parent=Physo127971;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 747382 748116 . + 0 ID=Physo127971;Parent=Physo127971;rank=1 scaffold_3 . exon 747382 748116 . + . ID=Physo127971.1;Parent=Physo127971;constitutive=1;rank=1 scaffold_3 . CDS 748193 748315 . + 0 ID=Physo127971;Parent=Physo127971;rank=2 scaffold_3 . exon 748193 748315 . + . ID=Physo127971.2;Parent=Physo127971;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 750013 755712 . - . ID=Physo127973;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30182;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 750013 755712 . - . ID=Physo127973;Parent=Physo127973;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 750013 755712 . - 0 ID=Physo127973;Parent=Physo127973;rank=1 scaffold_3 . exon 750013 755712 . - . ID=Physo127973.1;Parent=Physo127973;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 756665 757318 . - . ID=Physo127974;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30183;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 756665 757318 . - . ID=Physo127974;Parent=Physo127974;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 756665 757318 . - 0 ID=Physo127974;Parent=Physo127974;rank=1 scaffold_3 . exon 756665 757318 . - . ID=Physo127974.1;Parent=Physo127974;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 758465 759118 . + . ID=Physo127975;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30184;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 758465 759118 . + . ID=Physo127975;Parent=Physo127975;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 758465 759118 . + 0 ID=Physo127975;Parent=Physo127975;rank=1 scaffold_3 . exon 758465 759118 . + . ID=Physo127975.1;Parent=Physo127975;constitutive=1;rank=1 scaffold_3 . repeat_region 765805 766261 . ? . description=dust scaffold_3 . biological_region 768129 768131 0.999 - . logic_name=eponine scaffold_3 . repeat_region 771172 771183 . ? . description=dust scaffold_3 . repeat_region 771524 771533 . ? . description=dust scaffold_3 . repeat_region 775506 775516 . ? . description=dust scaffold_3 ensembl protein_coding_gene 766451 767104 . - . ID=Physo127976;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30185;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 766451 767104 . - . ID=Physo127976;Parent=Physo127976;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 766451 767104 . - 0 ID=Physo127976;Parent=Physo127976;rank=1 scaffold_3 . exon 766451 767104 . - . ID=Physo127976.1;Parent=Physo127976;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 768251 768904 . + . ID=Physo127977;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30186;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 768251 768904 . + . ID=Physo127977;Parent=Physo127977;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 768251 768904 . + 0 ID=Physo127977;Parent=Physo127977;rank=1 scaffold_3 . exon 768251 768904 . + . ID=Physo127977.1;Parent=Physo127977;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 769289 769891 . - . ID=Physo127978;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30187;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 769289 769891 . - . ID=Physo127978;Parent=Physo127978;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 769289 769891 . - 0 ID=Physo127978;Parent=Physo127978;rank=1 scaffold_3 . exon 769289 769891 . - . ID=Physo127978.1;Parent=Physo127978;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 771816 772461 . - . ID=Physo127979;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30188;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 771816 772461 . - . ID=Physo127979;Parent=Physo127979;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 771816 772460 . - 0 ID=Physo127979;Parent=Physo127979;rank=1 scaffold_3 . exon 771816 772461 . - . ID=Physo127979.1;Parent=Physo127979;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 774372 775017 . + . ID=Physo127980;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30189;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 774372 775017 . + . ID=Physo127980;Parent=Physo127980;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 774372 775017 . + . ID=Physo127980.1;Parent=Physo127980;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 774373 775017 . + 0 ID=Physo127980;Parent=Physo127980;rank=1 scaffold_3 ensembl protein_coding_gene 775887 776528 . - . ID=Physo127981;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30190;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 775887 776528 . - . ID=Physo127981;Parent=Physo127981;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 775887 776528 . - 0 ID=Physo127981;Parent=Physo127981;rank=1 scaffold_3 . exon 775887 776528 . - . ID=Physo127981.1;Parent=Physo127981;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 778848 779504 . - . ID=Physo127982;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30191;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 778848 779504 . - . ID=Physo127982;Parent=Physo127982;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 778848 779504 . - 0 ID=Physo127982;Parent=Physo127982;rank=1 scaffold_3 . exon 778848 779504 . - . ID=Physo127982.1;Parent=Physo127982;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 780618 781300 . + . ID=Physo127983;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30192;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 780618 781300 . + . ID=Physo127983;Parent=Physo127983;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 780618 781300 . + . ID=Physo127983.1;Parent=Physo127983;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 780656 781300 . + 0 ID=Physo127983;Parent=Physo127983;rank=1 scaffold_3 ensembl protein_coding_gene 781415 783457 . - . ID=Physo127984;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30193;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 781415 783457 . - . ID=Physo127984;Parent=Physo127984;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 781415 781757 . - . ID=Physo127984.4;Parent=Physo127984;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_3 . CDS 781536 781757 . - 0 ID=Physo127984;Parent=Physo127984;rank=4 scaffold_3 . CDS 781834 782102 . - 0 ID=Physo127984;Parent=Physo127984;rank=3 scaffold_3 . exon 781834 782102 . - . ID=Physo127984.3;Parent=Physo127984;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 782280 783315 . - 0 ID=Physo127984;Parent=Physo127984;rank=2 scaffold_3 . exon 782280 783315 . - . ID=Physo127984.2;Parent=Physo127984;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 783389 783457 . - 0 ID=Physo127984;Parent=Physo127984;rank=1 scaffold_3 . exon 783389 783457 . - . ID=Physo127984.1;Parent=Physo127984;constitutive=1;rank=1 scaffold_3 . biological_region 786355 786358 0.999 + . logic_name=eponine scaffold_3 . biological_region 786584 786585 0.999 + . logic_name=eponine scaffold_3 . biological_region 786599 786604 0.999 + . logic_name=eponine scaffold_3 . biological_region 786723 786728 0.999 - . logic_name=eponine scaffold_3 . biological_region 787057 787064 0.999 - . logic_name=eponine scaffold_3 . biological_region 787140 787142 0.999 + . logic_name=eponine scaffold_3 . biological_region 787161 787168 0.999 - . logic_name=eponine scaffold_3 . biological_region 787196 787199 0.999 - . logic_name=eponine scaffold_3 . biological_region 787249 787251 0.999 + . logic_name=eponine scaffold_3 . biological_region 787337 787342 0.999 - . logic_name=eponine scaffold_3 . biological_region 787367 787368 0.999 + . logic_name=eponine scaffold_3 . biological_region 787522 787524 0.999 + . logic_name=eponine scaffold_3 . biological_region 787796 787798 0.999 + . logic_name=eponine scaffold_3 . biological_region 787860 787861 0.999 + . logic_name=eponine scaffold_3 . biological_region 787959 787961 0.999 - . logic_name=eponine scaffold_3 . biological_region 787993 787998 0.999 + . logic_name=eponine scaffold_3 . repeat_region 788092 788117 . ? . description=dust scaffold_3 . repeat_region 788092 788117 . ? . description=trf scaffold_3 . repeat_region 788182 788205 . ? . description=trf scaffold_3 . biological_region 788329 788331 0.999 + . logic_name=eponine scaffold_3 . biological_region 788464 788465 0.999 - . logic_name=eponine scaffold_3 . biological_region 788741 788741 0.999 - . logic_name=eponine scaffold_3 . biological_region 788756 788758 0.999 - . logic_name=eponine scaffold_3 . repeat_region 789002 789042 . ? . description=dust scaffold_3 . repeat_region 789010 789042 . ? . description=trf scaffold_3 . biological_region 790551 790552 0.999 + . logic_name=eponine scaffold_3 . biological_region 790703 790705 0.999 + . logic_name=eponine scaffold_3 . biological_region 790838 790843 0.999 + . logic_name=eponine scaffold_3 . biological_region 791745 791750 0.999 - . logic_name=eponine scaffold_3 . biological_region 792001 792002 0.999 + . logic_name=eponine scaffold_3 . repeat_region 792550 792557 . ? . description=dust scaffold_3 . repeat_region 793082 793387 . + . description=GypsyPi-1c_LTR scaffold_3 . repeat_region 793388 795011 . + . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 794728 794777 . ? . description=trf scaffold_3 . repeat_region 794734 794777 . ? . description=trf scaffold_3 . repeat_region 795270 795517 . ? . description=trf scaffold_3 . repeat_region 795275 795453 . + . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 795345 795581 . ? . description=trf scaffold_3 . repeat_region 795425 795672 . + . description=GypsyPi-1c_I-int scaffold_3 . biological_region 795826 795826 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 788170 789927 . + . ID=Physo127985;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30194;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 788170 789927 . + . ID=Physo127985;Parent=Physo127985;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 788170 789876 . + 0 ID=Physo127985;Parent=Physo127985;rank=1 scaffold_3 . exon 788170 789927 . + . ID=Physo127985.1;Parent=Physo127985;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 790281 791006 . - . ID=Physo127986;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30195;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 790281 791006 . - . ID=Physo127986;Parent=Physo127986;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 790281 791006 . - 0 ID=Physo127986;Parent=Physo127986;rank=1 scaffold_3 . exon 790281 791006 . - . ID=Physo127986.1;Parent=Physo127986;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 791574 791882 . - . ID=Physo127987;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30196;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 791574 791882 . - . ID=Physo127987;Parent=Physo127987;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 791574 791882 . - 0 ID=Physo127987;Parent=Physo127987;rank=1 scaffold_3 . exon 791574 791882 . - . ID=Physo127987.1;Parent=Physo127987;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 793475 794412 . + . ID=Physo127988;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30197;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 793475 794412 . + . ID=Physo127988;Parent=Physo127988;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 793475 793739 . + 0 ID=Physo127988;Parent=Physo127988;rank=1 scaffold_3 . exon 793475 793739 . + . ID=Physo127988.1;Parent=Physo127988;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 793919 794412 . + 0 ID=Physo127988;Parent=Physo127988;rank=2 scaffold_3 . exon 793919 794412 . + . ID=Physo127988.2;Parent=Physo127988;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . repeat_region 800005 800106 . + . description=(CGA)n scaffold_3 ensembl protein_coding_gene 798401 800206 . + . ID=Physo127989;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30198;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 798401 800206 . + . ID=Physo127989;Parent=Physo127989;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 798401 800206 . + 0 ID=Physo127989;Parent=Physo127989;rank=1 scaffold_3 . exon 798401 800206 . + . ID=Physo127989.1;Parent=Physo127989;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 804192 806725 . + . ID=Physo127990;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30199;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 804192 806725 . + . ID=Physo127990;Parent=Physo127990;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 804192 804919 . + 0 ID=Physo127990;Parent=Physo127990;rank=1 scaffold_3 . exon 804192 804919 . + . ID=Physo127990.1;Parent=Physo127990;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 805123 805326 . + 0 ID=Physo127990;Parent=Physo127990;rank=2 scaffold_3 . exon 805123 805326 . + . ID=Physo127990.2;Parent=Physo127990;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 805617 805887 . + 0 ID=Physo127990;Parent=Physo127990;rank=3 scaffold_3 . exon 805617 805887 . + . ID=Physo127990.3;Parent=Physo127990;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 806267 806725 . + 0 ID=Physo127990;Parent=Physo127990;rank=4 scaffold_3 . repeat_region 808213 808226 . ? . description=dust scaffold_3 . repeat_region 810958 810967 . ? . description=dust scaffold_3 . repeat_region 811519 811526 . ? . description=dust scaffold_3 . repeat_region 812433 812444 . ? . description=dust scaffold_3 . repeat_region 812632 812639 . ? . description=dust scaffold_3 . repeat_region 813566 813575 . ? . description=dust scaffold_3 . repeat_region 814384 814403 . ? . description=trf scaffold_3 . exon 806267 806725 . + . ID=Physo127990.4;Parent=Physo127990;constitutive=1;rank=4 scaffold_3 ensembl protein_coding_gene 821464 822351 . + . ID=Physo127991;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30200;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 821464 822351 . + . ID=Physo127991;Parent=Physo127991;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 821464 821623 . + 0 ID=Physo127991;Parent=Physo127991;rank=1 scaffold_3 . exon 821464 821623 . + . ID=Physo127991.1;Parent=Physo127991;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 821746 821919 . + 0 ID=Physo127991;Parent=Physo127991;rank=2 scaffold_3 . exon 821746 821919 . + . ID=Physo127991.2;Parent=Physo127991;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 822208 822226 . + 0 ID=Physo127991;Parent=Physo127991;rank=3 scaffold_3 . exon 822208 822226 . + . ID=Physo127991.3;Parent=Physo127991;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . CDS 822339 822351 . + 0 ID=Physo127991;Parent=Physo127991;rank=4 scaffold_3 . exon 822339 822351 . + . ID=Physo127991.4;Parent=Physo127991;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . repeat_region 826373 826386 . ? . description=dust scaffold_3 . repeat_region 826722 826734 . ? . description=dust scaffold_3 . biological_region 827819 827820 0.999 - . logic_name=eponine scaffold_3 . biological_region 828169 828172 0.999 - . logic_name=eponine scaffold_3 . repeat_region 828238 828246 . ? . description=dust scaffold_3 . repeat_region 828532 828589 . ? . description=trf scaffold_3 . repeat_region 831220 831291 . ? . description=trf scaffold_3 . biological_region 832807 832810 0.999 + . logic_name=eponine scaffold_3 . biological_region 832905 832907 0.999 + . logic_name=eponine scaffold_3 . repeat_region 834289 834296 . ? . description=dust scaffold_3 . biological_region 834525 834530 0.999 - . logic_name=eponine scaffold_3 . biological_region 834546 834546 0.999 - . logic_name=eponine scaffold_3 . biological_region 834670 834674 0.999 - . logic_name=eponine scaffold_3 . biological_region 834966 834969 0.999 - . logic_name=eponine scaffold_3 . biological_region 835044 835050 0.999 - . logic_name=eponine scaffold_3 . biological_region 835244 835244 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 827466 828024 . + . ID=Physo127992;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30201;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 827466 828024 . + . ID=Physo127992;Parent=Physo127992;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 827466 827586 . + 0 ID=Physo127992;Parent=Physo127992;rank=1 scaffold_3 . exon 827466 827586 . + . ID=Physo127992.1;Parent=Physo127992;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 827627 828024 . + 0 ID=Physo127992;Parent=Physo127992;rank=2 scaffold_3 . exon 827627 828024 . + . ID=Physo127992.2;Parent=Physo127992;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 832697 834175 . + . ID=Physo127993;biotype=protein_coding;description=C2H2 zinc finger transcription factor [Source:UniProtKB/TrEMBL%3BAcc:B5LUS2];external_name=estExt_fgenesh1_pg.C_30202;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 832697 834175 . + . ID=Physo127993;Parent=Physo127993;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 832697 834175 . + 0 ID=Physo127993;Parent=Physo127993;rank=1 scaffold_3 . exon 832697 834175 . + . ID=Physo127993.1;Parent=Physo127993;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 834883 837898 . + . ID=Physo127995;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30204;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 834883 837898 . + . ID=Physo127995;Parent=Physo127995;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 834883 835155 . + 0 ID=Physo127995;Parent=Physo127995;rank=1 scaffold_3 . exon 834883 835155 . + . ID=Physo127995.1;Parent=Physo127995;constitutive=1;rank=1 scaffold_3 . CDS 835262 837898 . + 0 ID=Physo127995;Parent=Physo127995;rank=2 scaffold_3 . exon 835262 837898 . + . ID=Physo127995.2;Parent=Physo127995;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 834328 834645 . - . ID=Physo155392;biotype=protein_coding;external_name=C_scaffold_3000062;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 834328 834645 . - . ID=Physo155392;Parent=Physo155392;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 834328 834396 . - 0 ID=Physo155392;Parent=Physo155392;rank=2 scaffold_3 . exon 834328 834396 . - . ID=Physo155392.2;Parent=Physo155392;constitutive=1;rank=2 scaffold_3 . CDS 834439 834645 . - 0 ID=Physo155392;Parent=Physo155392;rank=1 scaffold_3 . exon 834439 834645 . - . ID=Physo155392.1;Parent=Physo155392;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 838107 840017 . - . ID=Physo108225;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30014;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 838107 840017 . - . ID=Physo108225;Parent=Physo108225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 838107 839513 . - 0 ID=Physo108225;Parent=Physo108225;rank=2 scaffold_3 . exon 838107 839513 . - . ID=Physo108225.2;Parent=Physo108225;constitutive=1;rank=2 scaffold_3 . CDS 839598 840017 . - 0 ID=Physo108225;Parent=Physo108225;rank=1 scaffold_3 . exon 839598 840017 . - . ID=Physo108225.1;Parent=Physo108225;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 840357 841047 . - . ID=Physo108226;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30015;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 840357 841047 . - . ID=Physo108226;Parent=Physo108226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 840357 841047 . - . ID=Physo108226.1;Parent=Physo108226;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 840441 841013 . - 0 ID=Physo108226;Parent=Physo108226;rank=1 scaffold_3 ensembl protein_coding_gene 842488 843267 . + . ID=Physo108227;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30016;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 842488 843267 . + . ID=Physo108227;Parent=Physo108227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 842488 842759 . + . ID=Physo108227.1;Parent=Physo108227;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 842525 842759 . + 0 ID=Physo108227;Parent=Physo108227;rank=1 scaffold_3 . CDS 842977 843197 . + 0 ID=Physo108227;Parent=Physo108227;rank=2 scaffold_3 . exon 842977 843267 . + . ID=Physo108227.2;Parent=Physo108227;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 841668 842272 . - . ID=Physo127998;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30207;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 841668 842272 . - . ID=Physo127998;Parent=Physo127998;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 841668 842272 . - . ID=Physo127998.1;Parent=Physo127998;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 . CDS 841712 842272 . - 0 ID=Physo127998;Parent=Physo127998;rank=1 scaffold_3 ensembl protein_coding_gene 843355 845724 . - . ID=Physo128000;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30209;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 843355 845724 . - . ID=Physo128000;Parent=Physo128000;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 843355 845724 . - 0 ID=Physo128000;Parent=Physo128000;rank=1 scaffold_3 . exon 843355 845724 . - . ID=Physo128000.1;Parent=Physo128000;constitutive=1;rank=1 scaffold_3 . biological_region 848770 848773 0.999 - . logic_name=eponine scaffold_3 . biological_region 848773 848776 0.999 + . logic_name=eponine scaffold_3 . biological_region 848898 848902 0.999 + . logic_name=eponine scaffold_3 . biological_region 848903 848905 0.999 - . logic_name=eponine scaffold_3 . biological_region 852391 852392 0.999 - . logic_name=eponine scaffold_3 . biological_region 852444 852447 0.999 + . logic_name=eponine scaffold_3 . biological_region 852459 852465 0.999 + . logic_name=eponine scaffold_3 . biological_region 852467 852468 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 846637 847950 . - . ID=Physo128001;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30210;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 846637 847950 . - . ID=Physo128001;Parent=Physo128001;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 846637 847060 . - 0 ID=Physo128001;Parent=Physo128001;rank=6 scaffold_3 . exon 846637 847060 . - . ID=Physo128001.6;Parent=Physo128001;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 . CDS 847138 847299 . - 0 ID=Physo128001;Parent=Physo128001;rank=5 scaffold_3 . exon 847138 847299 . - . ID=Physo128001.5;Parent=Physo128001;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_3 . CDS 847324 847390 . - 0 ID=Physo128001;Parent=Physo128001;rank=4 scaffold_3 . exon 847324 847390 . - . ID=Physo128001.4;Parent=Physo128001;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_3 . CDS 847460 847571 . - 0 ID=Physo128001;Parent=Physo128001;rank=3 scaffold_3 . exon 847460 847571 . - . ID=Physo128001.3;Parent=Physo128001;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 847660 847740 . - 0 ID=Physo128001;Parent=Physo128001;rank=2 scaffold_3 . exon 847660 847740 . - . ID=Physo128001.2;Parent=Physo128001;constitutive=1;rank=2 scaffold_3 . CDS 847867 847950 . - 0 ID=Physo128001;Parent=Physo128001;rank=1 scaffold_3 . exon 847867 847950 . - . ID=Physo128001.1;Parent=Physo128001;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 848575 849143 . + . ID=Physo128002;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30211;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 848575 849143 . + . ID=Physo128002;Parent=Physo128002;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 848575 849143 . + . ID=Physo128002.1;Parent=Physo128002;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 848706 849143 . + 0 ID=Physo128002;Parent=Physo128002;rank=1 scaffold_3 ensembl protein_coding_gene 855197 856767 . - . ID=Physo128004;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30213;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 855197 856767 . - . ID=Physo128004;Parent=Physo128004;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 855197 855256 . - 0 ID=Physo128004;Parent=Physo128004;rank=6 scaffold_3 . exon 855197 855256 . - . ID=Physo128004.6;Parent=Physo128004;constitutive=1;rank=6 scaffold_3 . CDS 855464 855745 . - 0 ID=Physo128004;Parent=Physo128004;rank=5 scaffold_3 . exon 855464 855745 . - . ID=Physo128004.5;Parent=Physo128004;constitutive=1;rank=5 scaffold_3 . CDS 855818 855963 . - 0 ID=Physo128004;Parent=Physo128004;rank=4 scaffold_3 . CDS 856036 856299 . - 0 ID=Physo128004;Parent=Physo128004;rank=3 scaffold_3 . CDS 856476 856552 . - 0 ID=Physo128004;Parent=Physo128004;rank=2 scaffold_3 . CDS 856595 856767 . - 0 ID=Physo128004;Parent=Physo128004;rank=1 scaffold_3 ensembl protein_coding_gene 849222 852845 . - . ID=Physo155396;biotype=protein_coding;external_name=C_scaffold_3000066;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 849222 852845 . - . ID=Physo155396;Parent=Physo155396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 849222 849468 . - 0 ID=Physo155396;Parent=Physo155396;rank=7 scaffold_3 . exon 849222 849468 . - . ID=Physo155396.7;Parent=Physo155396;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 849544 849656 . - 0 ID=Physo155396;Parent=Physo155396;rank=6 scaffold_3 . exon 849544 849656 . - . ID=Physo155396.6;Parent=Physo155396;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_3 . CDS 849702 850185 . - 0 ID=Physo155396;Parent=Physo155396;rank=5 scaffold_3 . exon 849702 850185 . - . ID=Physo155396.5;Parent=Physo155396;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 850546 851620 . - 0 ID=Physo155396;Parent=Physo155396;rank=4 scaffold_3 . exon 850546 851620 . - . ID=Physo155396.4;Parent=Physo155396;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_3 . CDS 851693 851735 . - 0 ID=Physo155396;Parent=Physo155396;rank=3 scaffold_3 . exon 851693 851735 . - . ID=Physo155396.3;Parent=Physo155396;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 851772 852087 . - 0 ID=Physo155396;Parent=Physo155396;rank=2 scaffold_3 . exon 851772 852087 . - . ID=Physo155396.2;Parent=Physo155396;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 852139 852845 . - 0 ID=Physo155396;Parent=Physo155396;rank=1 scaffold_3 . exon 852139 852845 . - . ID=Physo155396.1;Parent=Physo155396;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . repeat_region 856166 856193 . ? . description=trf scaffold_3 . repeat_region 857185 857275 . ? . description=trf scaffold_3 . repeat_region 858332 858414 . ? . description=dust scaffold_3 . repeat_region 858340 858383 . ? . description=trf scaffold_3 . repeat_region 858340 858389 . ? . description=trf scaffold_3 . repeat_region 858340 858390 . ? . description=trf scaffold_3 . repeat_region 864130 864410 . - . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 864680 867005 . - . description=GypsyPi-1c_I-int scaffold_3 . exon 855818 855963 . - . ID=Physo128004.4;Parent=Physo128004;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . exon 856036 856299 . - . ID=Physo128004.3;Parent=Physo128004;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_3 . exon 856476 856552 . - . ID=Physo128004.2;Parent=Physo128004;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . exon 856595 856767 . - . ID=Physo128004.1;Parent=Physo128004;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 861595 863647 . - . ID=Physo128005;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30214;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 861595 863647 . - . ID=Physo128005;Parent=Physo128005;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 861595 862671 . - 0 ID=Physo128005;Parent=Physo128005;rank=3 scaffold_3 . exon 861595 862671 . - . ID=Physo128005.3;Parent=Physo128005;constitutive=1;rank=3 scaffold_3 . CDS 862845 863382 . - 0 ID=Physo128005;Parent=Physo128005;rank=2 scaffold_3 . exon 862845 863382 . - . ID=Physo128005.2;Parent=Physo128005;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 863571 863647 . - 0 ID=Physo128005;Parent=Physo128005;rank=1 scaffold_3 . exon 863571 863647 . - . ID=Physo128005.1;Parent=Physo128005;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 864426 865181 . - . ID=Physo128006;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30215;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 864426 865181 . - . ID=Physo128006;Parent=Physo128006;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 864426 865181 . - 0 ID=Physo128006;Parent=Physo128006;rank=1 scaffold_3 . exon 864426 865181 . - . ID=Physo128006.1;Parent=Physo128006;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 865345 867414 . - . ID=Physo128007;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30216;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 865345 867414 . - . ID=Physo128007;Parent=Physo128007;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 865345 867414 . - 0 ID=Physo128007;Parent=Physo128007;rank=1 scaffold_3 . exon 865345 867414 . - . ID=Physo128007.1;Parent=Physo128007;constitutive=1;rank=1 scaffold_3 . biological_region 866206 866208 0.999 + . logic_name=eponine scaffold_3 . biological_region 867360 867364 0.999 - . logic_name=eponine scaffold_3 . biological_region 867389 867391 0.999 - . logic_name=eponine scaffold_3 . biological_region 867642 867644 0.999 - . logic_name=eponine scaffold_3 . biological_region 867710 867712 0.999 - . logic_name=eponine scaffold_3 . biological_region 868070 868077 0.999 - . logic_name=eponine scaffold_3 . biological_region 873818 873821 0.999 - . logic_name=eponine scaffold_3 . biological_region 873842 873844 0.999 - . logic_name=eponine scaffold_3 . biological_region 873898 873903 0.999 + . logic_name=eponine scaffold_3 . biological_region 873931 873932 0.999 + . logic_name=eponine scaffold_3 . biological_region 873988 873989 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 870286 873377 . - . ID=Physo128008;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30217;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 870286 873377 . - . ID=Physo128008;Parent=Physo128008;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 870286 872244 . - 0 ID=Physo128008;Parent=Physo128008;rank=5 scaffold_3 . exon 870286 872244 . - . ID=Physo128008.5;Parent=Physo128008;constitutive=1;rank=5 scaffold_3 . CDS 872276 872758 . - 0 ID=Physo128008;Parent=Physo128008;rank=4 scaffold_3 . exon 872276 872758 . - . ID=Physo128008.4;Parent=Physo128008;constitutive=1;rank=4 scaffold_3 . CDS 872802 873032 . - 0 ID=Physo128008;Parent=Physo128008;rank=3 scaffold_3 . exon 872802 873032 . - . ID=Physo128008.3;Parent=Physo128008;constitutive=1;rank=3 scaffold_3 . CDS 873168 873207 . - 0 ID=Physo128008;Parent=Physo128008;rank=2 scaffold_3 . exon 873168 873207 . - . ID=Physo128008.2;Parent=Physo128008;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 873364 873377 . - 0 ID=Physo128008;Parent=Physo128008;rank=1 scaffold_3 . exon 873364 873377 . - . ID=Physo128008.1;Parent=Physo128008;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 873726 877477 . + . ID=Physo128009;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30218;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 873726 877477 . + . ID=Physo128009;Parent=Physo128009;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 873726 877412 . + 0 ID=Physo128009;Parent=Physo128009;rank=1 scaffold_3 . exon 873726 877477 . + . ID=Physo128009.1;Parent=Physo128009;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 . repeat_region 880029 880057 . ? . description=trf scaffold_3 . repeat_region 880283 880324 . ? . description=dust scaffold_3 . repeat_region 880284 880324 . ? . description=trf scaffold_3 . repeat_region 880285 880324 . ? . description=trf scaffold_3 . repeat_region 881636 881646 . ? . description=dust scaffold_3 . repeat_region 883201 883217 . ? . description=dust scaffold_3 ensembl protein_coding_gene 880181 881578 . + . ID=Physo128010;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30219;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 880181 881578 . + . ID=Physo128010;Parent=Physo128010;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 880181 881578 . + 0 ID=Physo128010;Parent=Physo128010;rank=1 scaffold_3 . exon 880181 881578 . + . ID=Physo128010.1;Parent=Physo128010;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 881749 882783 . - . ID=Physo128011;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30220;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 881749 882783 . - . ID=Physo128011;Parent=Physo128011;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 881749 882059 . - 0 ID=Physo128011;Parent=Physo128011;rank=3 scaffold_3 . exon 881749 882059 . - . ID=Physo128011.3;Parent=Physo128011;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 882147 882270 . - 0 ID=Physo128011;Parent=Physo128011;rank=2 scaffold_3 . exon 882147 882270 . - . ID=Physo128011.2;Parent=Physo128011;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 882349 882783 . - 0 ID=Physo128011;Parent=Physo128011;rank=1 scaffold_3 . exon 882349 882783 . - . ID=Physo128011.1;Parent=Physo128011;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 884132 886965 . + . ID=Physo128012;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30221;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 884132 886965 . + . ID=Physo128012;Parent=Physo128012;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 884132 884317 . + 0 ID=Physo128012;Parent=Physo128012;rank=1 scaffold_3 . exon 884132 884317 . + . ID=Physo128012.1;Parent=Physo128012;constitutive=1;rank=1 scaffold_3 . CDS 884473 886965 . + 0 ID=Physo128012;Parent=Physo128012;rank=2 scaffold_3 . exon 884473 886965 . + . ID=Physo128012.2;Parent=Physo128012;constitutive=1;rank=2 scaffold_3 . biological_region 885792 885796 0.999 - . logic_name=eponine scaffold_3 . biological_region 886408 886412 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 892981 895368 . - . ID=Physo128013;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30222;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 892981 895368 . - . ID=Physo128013;Parent=Physo128013;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 892981 895368 . - 0 ID=Physo128013;Parent=Physo128013;rank=1 scaffold_3 . exon 892981 895368 . - . ID=Physo128013.1;Parent=Physo128013;constitutive=1;rank=1 scaffold_3 . repeat_region 901610 901642 . ? . description=trf scaffold_3 . repeat_region 903152 903174 . ? . description=dust scaffold_3 . repeat_region 904225 904239 . ? . description=dust scaffold_3 . repeat_region 905003 905026 . ? . description=dust scaffold_3 . repeat_region 905003 905026 . ? . description=trf scaffold_3 . repeat_region 905004 905028 . ? . description=trf scaffold_3 ensembl protein_coding_gene 904510 906299 . + . ID=Physo108228;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30017;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 904510 906299 . + . ID=Physo108228;Parent=Physo108228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 904510 904977 . + 0 ID=Physo108228;Parent=Physo108228;rank=1 scaffold_3 . exon 904510 904977 . + . ID=Physo108228.1;Parent=Physo108228;constitutive=1;rank=1 scaffold_3 . CDS 905062 905277 . + 0 ID=Physo108228;Parent=Physo108228;rank=2 scaffold_3 . exon 905062 905277 . + . ID=Physo108228.2;Parent=Physo108228;constitutive=1;rank=2 scaffold_3 . CDS 905352 905453 . + 0 ID=Physo108228;Parent=Physo108228;rank=3 scaffold_3 . exon 905352 905453 . + . ID=Physo108228.3;Parent=Physo108228;constitutive=1;rank=3 scaffold_3 . CDS 905530 905714 . + 0 ID=Physo108228;Parent=Physo108228;rank=4 scaffold_3 . exon 905530 905714 . + . ID=Physo108228.4;Parent=Physo108228;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_3 . CDS 905789 906299 . + 0 ID=Physo108228;Parent=Physo108228;rank=5 scaffold_3 ensembl protein_coding_gene 895716 897409 . - . ID=Physo128014;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30223;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 895716 897409 . - . ID=Physo128014;Parent=Physo128014;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 895716 895877 . - 0 ID=Physo128014;Parent=Physo128014;rank=6 scaffold_3 . exon 895716 895877 . - . ID=Physo128014.6;Parent=Physo128014;constitutive=1;rank=6 scaffold_3 . CDS 895959 896126 . - 0 ID=Physo128014;Parent=Physo128014;rank=5 scaffold_3 . exon 895959 896126 . - . ID=Physo128014.5;Parent=Physo128014;constitutive=1;rank=5 scaffold_3 . CDS 896207 896618 . - 0 ID=Physo128014;Parent=Physo128014;rank=4 scaffold_3 . exon 896207 896618 . - . ID=Physo128014.4;Parent=Physo128014;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 896680 897000 . - 0 ID=Physo128014;Parent=Physo128014;rank=3 scaffold_3 . exon 896680 897000 . - . ID=Physo128014.3;Parent=Physo128014;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 897075 897172 . - 0 ID=Physo128014;Parent=Physo128014;rank=2 scaffold_3 . exon 897075 897172 . - . ID=Physo128014.2;Parent=Physo128014;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 897260 897409 . - 0 ID=Physo128014;Parent=Physo128014;rank=1 scaffold_3 . exon 897260 897409 . - . ID=Physo128014.1;Parent=Physo128014;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 898847 901227 . - . ID=Physo128016;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30225;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 898847 901227 . - . ID=Physo128016;Parent=Physo128016;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 898847 899084 . - 0 ID=Physo128016;Parent=Physo128016;rank=2 scaffold_3 . exon 898847 899084 . - . ID=Physo128016.2;Parent=Physo128016;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 899165 901227 . - 0 ID=Physo128016;Parent=Physo128016;rank=1 scaffold_3 . exon 899165 901227 . - . ID=Physo128016.1;Parent=Physo128016;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 901485 902143 . + . ID=Physo128017;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30226;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 901485 902143 . + . ID=Physo128017;Parent=Physo128017;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 901485 901545 . + 0 ID=Physo128017;Parent=Physo128017;rank=1 scaffold_3 . exon 901485 901545 . + . ID=Physo128017.1;Parent=Physo128017;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 901646 901848 . + 0 ID=Physo128017;Parent=Physo128017;rank=2 scaffold_3 . exon 901646 901848 . + . ID=Physo128017.2;Parent=Physo128017;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 901928 902143 . + 0 ID=Physo128017;Parent=Physo128017;rank=3 scaffold_3 . exon 901928 902143 . + . ID=Physo128017.3;Parent=Physo128017;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 903392 904345 . - . ID=Physo128018;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30227;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 903392 904345 . - . ID=Physo128018;Parent=Physo128018;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 903392 903409 . - 0 ID=Physo128018;Parent=Physo128018;rank=4 scaffold_3 . exon 903392 903409 . - . ID=Physo128018.4;Parent=Physo128018;constitutive=1;rank=4 scaffold_3 . CDS 903497 903918 . - 0 ID=Physo128018;Parent=Physo128018;rank=3 scaffold_3 . exon 903497 903918 . - . ID=Physo128018.3;Parent=Physo128018;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 904034 904140 . - 0 ID=Physo128018;Parent=Physo128018;rank=2 scaffold_3 . exon 904034 904140 . - . ID=Physo128018.2;Parent=Physo128018;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 904259 904341 . - 0 ID=Physo128018;Parent=Physo128018;rank=1 scaffold_3 . exon 904259 904345 . - . ID=Physo128018.1;Parent=Physo128018;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 897694 898105 . + . ID=Physo155400;biotype=protein_coding;external_name=C_scaffold_3000070;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 897694 898105 . + . ID=Physo155400;Parent=Physo155400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 897694 898044 . + 0 ID=Physo155400;Parent=Physo155400;rank=1 scaffold_3 . exon 897694 898044 . + . ID=Physo155400.1;Parent=Physo155400;constitutive=1;rank=1 scaffold_3 . CDS 898103 898105 . + 0 ID=Physo155400;Parent=Physo155400;rank=2 scaffold_3 . exon 898103 898105 . + . ID=Physo155400.2;Parent=Physo155400;constitutive=1;rank=2 scaffold_3 . biological_region 908328 908331 0.999 - . logic_name=eponine scaffold_3 . exon 905789 906299 . + . ID=Physo108228.5;Parent=Physo108228;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 ensembl protein_coding_gene 907175 908837 . - . ID=Physo128020;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30229;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 907175 908837 . - . ID=Physo128020;Parent=Physo128020;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 907175 907203 . - 0 ID=Physo128020;Parent=Physo128020;rank=3 scaffold_3 . exon 907175 907203 . - . ID=Physo128020.3;Parent=Physo128020;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 907535 907665 . - 0 ID=Physo128020;Parent=Physo128020;rank=2 scaffold_3 . exon 907535 907665 . - . ID=Physo128020.2;Parent=Physo128020;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 907693 908837 . - 0 ID=Physo128020;Parent=Physo128020;rank=1 scaffold_3 . exon 907693 908837 . - . ID=Physo128020.1;Parent=Physo128020;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 909525 911951 . - . ID=Physo128021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30230;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 909525 911951 . - . ID=Physo128021;Parent=Physo128021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 909525 911951 . - 0 ID=Physo128021;Parent=Physo128021;rank=1 scaffold_3 . exon 909525 911951 . - . ID=Physo128021.1;Parent=Physo128021;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 912142 917365 . - . ID=Physo128022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30231;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 912142 917365 . - . ID=Physo128022;Parent=Physo128022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 912142 914588 . - 0 ID=Physo128022;Parent=Physo128022;rank=3 scaffold_3 . exon 912142 914588 . - . ID=Physo128022.3;Parent=Physo128022;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 914843 916191 . - 0 ID=Physo128022;Parent=Physo128022;rank=2 scaffold_3 . exon 914843 916191 . - . ID=Physo128022.2;Parent=Physo128022;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 916251 917365 . - 0 ID=Physo128022;Parent=Physo128022;rank=1 scaffold_3 . repeat_region 920809 920817 . ? . description=dust scaffold_3 . repeat_region 924279 924286 . ? . description=dust scaffold_3 . repeat_region 924985 925028 . ? . description=trf scaffold_3 . exon 916251 917365 . - . ID=Physo128022.1;Parent=Physo128022;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 918169 920796 . + . ID=Physo128023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30232;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 918169 920796 . + . ID=Physo128023;Parent=Physo128023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 918169 920796 . + 0 ID=Physo128023;Parent=Physo128023;rank=1 scaffold_3 . exon 918169 920796 . + . ID=Physo128023.1;Parent=Physo128023;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 924337 928222 . - . ID=Physo128024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30233;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 924337 928222 . - . ID=Physo128024;Parent=Physo128024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 924337 925326 . - 0 ID=Physo128024;Parent=Physo128024;rank=9 scaffold_3 . exon 924337 925326 . - . ID=Physo128024.9;Parent=Physo128024;constitutive=1;rank=9 scaffold_3 . CDS 925426 925760 . - 0 ID=Physo128024;Parent=Physo128024;rank=8 scaffold_3 . exon 925426 925760 . - . ID=Physo128024.8;Parent=Physo128024;constitutive=1;ensembl_phase=1;rank=8 scaffold_3 . CDS 925790 925881 . - 0 ID=Physo128024;Parent=Physo128024;rank=7 scaffold_3 . CDS 925962 926025 . - 0 ID=Physo128024;Parent=Physo128024;rank=6 scaffold_3 . CDS 926292 926392 . - 0 ID=Physo128024;Parent=Physo128024;rank=5 scaffold_3 . CDS 926460 927284 . - 0 ID=Physo128024;Parent=Physo128024;rank=4 scaffold_3 . CDS 927368 927488 . - 0 ID=Physo128024;Parent=Physo128024;rank=3 scaffold_3 . CDS 927562 927679 . - 0 ID=Physo128024;Parent=Physo128024;rank=2 scaffold_3 . CDS 927764 928222 . - 0 ID=Physo128024;Parent=Physo128024;rank=1 scaffold_3 . biological_region 926002 926006 0.999 + . logic_name=eponine scaffold_3 . biological_region 926254 926258 0.999 + . logic_name=eponine scaffold_3 . biological_region 926332 926333 0.999 - . logic_name=eponine scaffold_3 . biological_region 928066 928072 0.999 - . logic_name=eponine scaffold_3 . biological_region 934577 934580 0.999 - . logic_name=eponine scaffold_3 . exon 925790 925881 . - . ID=Physo128024.7;Parent=Physo128024;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_3 . exon 925962 926025 . - . ID=Physo128024.6;Parent=Physo128024;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_3 . exon 926292 926392 . - . ID=Physo128024.5;Parent=Physo128024;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_3 . exon 926460 927284 . - . ID=Physo128024.4;Parent=Physo128024;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_3 . exon 927368 927488 . - . ID=Physo128024.3;Parent=Physo128024;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . exon 927562 927679 . - . ID=Physo128024.2;Parent=Physo128024;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . exon 927764 928222 . - . ID=Physo128024.1;Parent=Physo128024;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 933060 933895 . - . ID=Physo128025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30234;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 933060 933895 . - . ID=Physo128025;Parent=Physo128025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 933060 933415 . - 0 ID=Physo128025;Parent=Physo128025;rank=2 scaffold_3 . exon 933060 933415 . - . ID=Physo128025.2;Parent=Physo128025;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 933637 933895 . - 0 ID=Physo128025;Parent=Physo128025;rank=1 scaffold_3 . exon 933637 933895 . - . ID=Physo128025.1;Parent=Physo128025;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 934399 935127 . + . ID=Physo128026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30235;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 934399 935127 . + . ID=Physo128026;Parent=Physo128026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 934399 935127 . + 0 ID=Physo128026;Parent=Physo128026;rank=1 scaffold_3 . exon 934399 935127 . + . ID=Physo128026.1;Parent=Physo128026;constitutive=1;rank=1 scaffold_3 . repeat_region 935802 935825 . ? . description=dust scaffold_3 . repeat_region 936613 936625 . ? . description=dust scaffold_3 . repeat_region 937511 937610 . ? . description=trf scaffold_3 . repeat_region 937512 937610 . ? . description=trf scaffold_3 . repeat_region 937845 937864 . ? . description=trf scaffold_3 . repeat_region 941677 941729 . ? . description=trf scaffold_3 . repeat_region 942237 942266 . ? . description=dust scaffold_3 . repeat_region 942237 942266 . ? . description=trf scaffold_3 . repeat_region 942237 942278 . + . description=(TCG)n scaffold_3 . repeat_region 942238 942279 . ? . description=trf scaffold_3 . repeat_region 943122 943144 . ? . description=dust scaffold_3 ensembl protein_coding_gene 936467 937771 . - . ID=Physo128027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30236;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 936467 937771 . - . ID=Physo128027;Parent=Physo128027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 936467 937771 . - . ID=Physo128027.1;Parent=Physo128027;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 . CDS 936644 937771 . - 0 ID=Physo128027;Parent=Physo128027;rank=1 scaffold_3 ensembl protein_coding_gene 940218 943240 . - . ID=Physo128028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30237;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 940218 943240 . - . ID=Physo128028;Parent=Physo128028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 940218 943114 . - 0 ID=Physo128028;Parent=Physo128028;rank=2 scaffold_3 . exon 940218 943114 . - . ID=Physo128028.2;Parent=Physo128028;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 943204 943240 . - 0 ID=Physo128028;Parent=Physo128028;rank=1 scaffold_3 . exon 943204 943240 . - . ID=Physo128028.1;Parent=Physo128028;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . biological_region 946124 946129 0.999 + . logic_name=eponine scaffold_3 . biological_region 946457 946460 0.999 - . logic_name=eponine scaffold_3 . biological_region 946642 946645 0.999 - . logic_name=eponine scaffold_3 . biological_region 946697 946701 0.999 + . logic_name=eponine scaffold_3 . biological_region 946726 946727 0.999 - . logic_name=eponine scaffold_3 . biological_region 947561 947563 0.999 + . logic_name=eponine scaffold_3 . biological_region 947897 947897 0.999 - . logic_name=eponine scaffold_3 . biological_region 948713 948717 0.999 - . logic_name=eponine scaffold_3 . biological_region 948998 949002 0.999 + . logic_name=eponine scaffold_3 . biological_region 949022 949023 0.999 + . logic_name=eponine scaffold_3 . biological_region 949046 949047 0.999 - . logic_name=eponine scaffold_3 . biological_region 950101 950105 0.999 + . logic_name=eponine scaffold_3 . biological_region 950175 950182 0.999 + . logic_name=eponine scaffold_3 . biological_region 951353 951355 0.999 - . logic_name=eponine scaffold_3 . biological_region 953131 953131 0.999 - . logic_name=eponine scaffold_3 . biological_region 954840 954844 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 946375 947487 . + . ID=Physo128029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30238;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 946375 947487 . + . ID=Physo128029;Parent=Physo128029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 946375 947487 . + 0 ID=Physo128029;Parent=Physo128029;rank=1 scaffold_3 . exon 946375 947487 . + . ID=Physo128029.1;Parent=Physo128029;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 948919 949947 . + . ID=Physo128030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30239;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 948919 949947 . + . ID=Physo128030;Parent=Physo128030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 948919 949313 . + . ID=Physo128030.1;Parent=Physo128030;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 948996 949313 . + 0 ID=Physo128030;Parent=Physo128030;rank=1 scaffold_3 . CDS 949392 949452 . + 0 ID=Physo128030;Parent=Physo128030;rank=2 scaffold_3 . exon 949392 949452 . + . ID=Physo128030.2;Parent=Physo128030;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 949528 949625 . + 0 ID=Physo128030;Parent=Physo128030;rank=3 scaffold_3 . exon 949528 949625 . + . ID=Physo128030.3;Parent=Physo128030;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 949703 949795 . + 0 ID=Physo128030;Parent=Physo128030;rank=4 scaffold_3 . exon 949703 949795 . + . ID=Physo128030.4;Parent=Physo128030;constitutive=1;rank=4 scaffold_3 . CDS 949886 949945 . + 0 ID=Physo128030;Parent=Physo128030;rank=5 scaffold_3 . exon 949886 949947 . + . ID=Physo128030.5;Parent=Physo128030;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_3 ensembl protein_coding_gene 952785 953423 . - . ID=Physo128032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30241;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 952785 953423 . - . ID=Physo128032;Parent=Physo128032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 952785 953242 . - 0 ID=Physo128032;Parent=Physo128032;rank=2 scaffold_3 . exon 952785 953242 . - . ID=Physo128032.2;Parent=Physo128032;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 953372 953423 . - 0 ID=Physo128032;Parent=Physo128032;rank=1 scaffold_3 . exon 953372 953423 . - . ID=Physo128032.1;Parent=Physo128032;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 950502 951434 . - . ID=Physo155406;biotype=protein_coding;external_name=C_scaffold_3000076;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 950502 951434 . - . ID=Physo155406;Parent=Physo155406;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 950502 950771 . - 0 ID=Physo155406;Parent=Physo155406;rank=3 scaffold_3 . exon 950502 950771 . - . ID=Physo155406.3;Parent=Physo155406;constitutive=1;rank=3 scaffold_3 . CDS 950802 951116 . - 0 ID=Physo155406;Parent=Physo155406;rank=2 scaffold_3 . exon 950802 951116 . - . ID=Physo155406.2;Parent=Physo155406;constitutive=1;rank=2 scaffold_3 . CDS 951153 951434 . - 0 ID=Physo155406;Parent=Physo155406;rank=1 scaffold_3 . exon 951153 951434 . - . ID=Physo155406.1;Parent=Physo155406;constitutive=1;rank=1 scaffold_3 . repeat_region 955387 955433 . ? . description=trf scaffold_3 . repeat_region 955454 955540 . ? . description=trf scaffold_3 . repeat_region 958468 958714 . ? . description=trf scaffold_3 . repeat_region 959365 961719 . + . description=GypsyPi-1c_I-int scaffold_3 ensembl protein_coding_gene 958653 962031 . + . ID=Physo128033;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30242;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 958653 962031 . + . ID=Physo128033;Parent=Physo128033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 958653 959255 . + 0 ID=Physo128033;Parent=Physo128033;rank=1 scaffold_3 . exon 958653 959255 . + . ID=Physo128033.1;Parent=Physo128033;constitutive=1;rank=1 scaffold_3 . CDS 959294 959762 . + 0 ID=Physo128033;Parent=Physo128033;rank=2 scaffold_3 . exon 959294 959762 . + . ID=Physo128033.2;Parent=Physo128033;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 959791 960043 . + 0 ID=Physo128033;Parent=Physo128033;rank=3 scaffold_3 . exon 959791 960043 . + . ID=Physo128033.3;Parent=Physo128033;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . CDS 960118 960881 . + 0 ID=Physo128033;Parent=Physo128033;rank=4 scaffold_3 . exon 960118 960881 . + . ID=Physo128033.4;Parent=Physo128033;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 960943 961984 . + 0 ID=Physo128033;Parent=Physo128033;rank=5 scaffold_3 . exon 960943 961984 . + . ID=Physo128033.5;Parent=Physo128033;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_3 . CDS 962025 962031 . + 0 ID=Physo128033;Parent=Physo128033;rank=6 scaffold_3 . exon 962025 962031 . + . ID=Physo128033.6;Parent=Physo128033;constitutive=1;ensembl_phase=2;rank=6 scaffold_3 ensembl protein_coding_gene 962292 963806 . - . ID=Physo128034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30243;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 962292 963806 . - . ID=Physo128034;Parent=Physo128034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 962292 963806 . - 0 ID=Physo128034;Parent=Physo128034;rank=1 scaffold_3 . exon 962292 963806 . - . ID=Physo128034.1;Parent=Physo128034;constitutive=1;rank=1 scaffold_3 . biological_region 966493 966493 0.999 - . logic_name=eponine scaffold_3 . biological_region 968021 968025 0.999 - . logic_name=eponine scaffold_3 . biological_region 968283 968284 0.999 - . logic_name=eponine scaffold_3 . biological_region 970743 970745 0.999 + . logic_name=eponine scaffold_3 . biological_region 971540 971544 0.999 + . logic_name=eponine scaffold_3 . biological_region 972756 972760 0.999 + . logic_name=eponine scaffold_3 . biological_region 973842 973844 0.999 + . logic_name=eponine scaffold_3 . biological_region 974119 974123 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 971839 985353 . + . ID=Physo108230;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30019;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 971839 985353 . + . ID=Physo108230;Parent=Physo108230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 971839 974272 . + 0 ID=Physo108230;Parent=Physo108230;rank=1 scaffold_3 . exon 971839 974272 . + . ID=Physo108230.1;Parent=Physo108230;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 974321 977442 . + 0 ID=Physo108230;Parent=Physo108230;rank=2 scaffold_3 . exon 974321 977442 . + . ID=Physo108230.2;Parent=Physo108230;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 977518 985278 . + 0 ID=Physo108230;Parent=Physo108230;rank=3 scaffold_3 ensembl protein_coding_gene 967788 969177 . + . ID=Physo128035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30244;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 967788 969177 . + . ID=Physo128035;Parent=Physo128035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 967788 968674 . + 0 ID=Physo128035;Parent=Physo128035;rank=1 scaffold_3 . exon 967788 968674 . + . ID=Physo128035.1;Parent=Physo128035;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 968751 969021 . + 0 ID=Physo128035;Parent=Physo128035;rank=2 scaffold_3 . exon 968751 969177 . + . ID=Physo128035.2;Parent=Physo128035;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_3 ensembl protein_coding_gene 970172 971251 . + . ID=Physo155409;biotype=protein_coding;external_name=C_scaffold_3000079;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 970172 971251 . + . ID=Physo155409;Parent=Physo155409;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 970172 971065 . + 0 ID=Physo155409;Parent=Physo155409;rank=1 scaffold_3 . exon 970172 971065 . + . ID=Physo155409.1;Parent=Physo155409;constitutive=1;rank=1 scaffold_3 . CDS 971156 971251 . + 0 ID=Physo155409;Parent=Physo155409;rank=2 scaffold_3 . exon 971156 971251 . + . ID=Physo155409.2;Parent=Physo155409;constitutive=1;rank=2 scaffold_3 . exon 977518 985353 . + . ID=Physo108230.3;Parent=Physo108230;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_3 . repeat_region 988316 988323 . ? . description=dust scaffold_3 . biological_region 988442 988443 0.999 + . logic_name=eponine scaffold_3 . repeat_region 989604 989644 . ? . description=dust scaffold_3 . repeat_region 990697 990705 . ? . description=dust scaffold_3 . repeat_region 990920 990927 . ? . description=dust scaffold_3 . repeat_region 991213 991223 . ? . description=dust scaffold_3 ensembl protein_coding_gene 971839 985353 . + . ID=Physo108230;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30019;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 971839 985353 . + . ID=Physo108230;Parent=Physo108230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 971839 974272 . + 0 ID=Physo108230;Parent=Physo108230;rank=1 scaffold_3 . CDS 974321 977442 . + 0 ID=Physo108230;Parent=Physo108230;rank=2 scaffold_3 . CDS 977518 985278 . + 0 ID=Physo108230;Parent=Physo108230;rank=3 scaffold_3 ensembl protein_coding_gene 989036 989440 . + . ID=Physo128038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30247;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 989036 989440 . + . ID=Physo128038;Parent=Physo128038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 989036 989085 . + 0 ID=Physo128038;Parent=Physo128038;rank=1 scaffold_3 . exon 989036 989085 . + . ID=Physo128038.1;Parent=Physo128038;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 989149 989440 . + 0 ID=Physo128038;Parent=Physo128038;rank=2 scaffold_3 . exon 989149 989440 . + . ID=Physo128038.2;Parent=Physo128038;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . repeat_region 999389 999417 . ? . description=trf scaffold_3 . repeat_region 1004074 1004103 . ? . description=trf scaffold_3 ensembl protein_coding_gene 1003699 1011512 . + . ID=Physo110622;biotype=protein_coding;external_name=estExt_Genewise1.C_30152;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1003699 1011512 . + . ID=Physo110622;Parent=Physo110622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1003699 1003984 . + . ID=Physo110622.1;Parent=Physo110622;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1003813 1003984 . + 0 ID=Physo110622;Parent=Physo110622;rank=1 scaffold_3 . CDS 1004157 1004208 . + 0 ID=Physo110622;Parent=Physo110622;rank=2 scaffold_3 . exon 1004157 1004208 . + . ID=Physo110622.2;Parent=Physo110622;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 1011113 1011512 . + 0 ID=Physo110622;Parent=Physo110622;rank=3 scaffold_3 . repeat_region 1010298 1010305 . ? . description=dust scaffold_3 . biological_region 1013208 1013213 0.999 + . logic_name=eponine scaffold_3 . biological_region 1013699 1013702 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1014938 1015791 . + . ID=Physo108233;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30022;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1014938 1015791 . + . ID=Physo108233;Parent=Physo108233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1014938 1015791 . + . ID=Physo108233.1;Parent=Physo108233;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1015011 1015634 . + 0 ID=Physo108233;Parent=Physo108233;rank=1 scaffold_3 . exon 1011113 1011512 . + . ID=Physo110622.3;Parent=Physo110622;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 ensembl protein_coding_gene 1013045 1014067 . + . ID=Physo110627;biotype=protein_coding;external_name=estExt_Genewise1.C_30157;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1013045 1014067 . + . ID=Physo110627;Parent=Physo110627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1013045 1014067 . + . ID=Physo110627.1;Parent=Physo110627;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1013060 1014067 . + 0 ID=Physo110627;Parent=Physo110627;rank=1 scaffold_3 ensembl protein_coding_gene 1011611 1012040 . - . ID=Physo128043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30252;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1011611 1012040 . - . ID=Physo128043;Parent=Physo128043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1011611 1011823 . - . ID=Physo128043.2;Parent=Physo128043;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1011739 1011823 . - 0 ID=Physo128043;Parent=Physo128043;rank=2 scaffold_3 . CDS 1011905 1012038 . - 0 ID=Physo128043;Parent=Physo128043;rank=1 scaffold_3 . exon 1011905 1012040 . - . ID=Physo128043.1;Parent=Physo128043;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_3 . repeat_region 1016784 1016815 . ? . description=trf scaffold_3 . repeat_region 1023090 1023156 . ? . description=trf scaffold_3 . repeat_region 1024629 1024675 . + . description=IS1 scaffold_3 ensembl protein_coding_gene 1015866 1016579 . - . ID=Physo155412;biotype=protein_coding;external_name=C_scaffold_3000082;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1015866 1016579 . - . ID=Physo155412;Parent=Physo155412;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1015866 1016126 . - 0 ID=Physo155412;Parent=Physo155412;rank=2 scaffold_3 . exon 1015866 1016126 . - . ID=Physo155412.2;Parent=Physo155412;constitutive=1;rank=2 scaffold_3 . CDS 1016202 1016579 . - 0 ID=Physo155412;Parent=Physo155412;rank=1 scaffold_3 . exon 1016202 1016579 . - . ID=Physo155412.1;Parent=Physo155412;constitutive=1;rank=1 scaffold_3 . biological_region 1026972 1026974 0.999 + . logic_name=eponine scaffold_3 . biological_region 1027454 1027458 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1027977 1030330 . + . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 1030484 1030762 . + . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 1032044 1032103 . ? . description=dust scaffold_3 ensembl protein_coding_gene 1027864 1030385 . + . ID=Physo128047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30256;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1027864 1030385 . + . ID=Physo128047;Parent=Physo128047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1027864 1029016 . + 0 ID=Physo128047;Parent=Physo128047;rank=1 scaffold_3 . exon 1027864 1029016 . + . ID=Physo128047.1;Parent=Physo128047;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1029136 1030385 . + 0 ID=Physo128047;Parent=Physo128047;rank=2 scaffold_3 . exon 1029136 1030385 . + . ID=Physo128047.2;Parent=Physo128047;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 1031714 1034671 . + . ID=Physo128048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30257;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1031714 1034671 . + . ID=Physo128048;Parent=Physo128048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1031714 1031800 . + 0 ID=Physo128048;Parent=Physo128048;rank=1 scaffold_3 . exon 1031714 1031800 . + . ID=Physo128048.1;Parent=Physo128048;constitutive=1;rank=1 scaffold_3 . CDS 1031877 1031933 . + 0 ID=Physo128048;Parent=Physo128048;rank=2 scaffold_3 . exon 1031877 1031933 . + . ID=Physo128048.2;Parent=Physo128048;constitutive=1;rank=2 scaffold_3 . CDS 1032011 1032467 . + 0 ID=Physo128048;Parent=Physo128048;rank=3 scaffold_3 . exon 1032011 1032467 . + . ID=Physo128048.3;Parent=Physo128048;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 1032531 1034671 . + 0 ID=Physo128048;Parent=Physo128048;rank=4 scaffold_3 . exon 1032531 1034671 . + . ID=Physo128048.4;Parent=Physo128048;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 ensembl protein_coding_gene 1034742 1036260 . - . ID=Physo128049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30258;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1034742 1036260 . - . ID=Physo128049;Parent=Physo128049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1034742 1034784 . - 0 ID=Physo128049;Parent=Physo128049;rank=9 scaffold_3 . exon 1034742 1034784 . - . ID=Physo128049.9;Parent=Physo128049;constitutive=1;ensembl_phase=2;rank=9 scaffold_3 . CDS 1034872 1034930 . - 0 ID=Physo128049;Parent=Physo128049;rank=8 scaffold_3 . exon 1034872 1034930 . - . ID=Physo128049.8;Parent=Physo128049;constitutive=1;ensembl_end_phase=2;rank=8 scaffold_3 . CDS 1035003 1035077 . - 0 ID=Physo128049;Parent=Physo128049;rank=7 scaffold_3 . CDS 1035144 1035221 . - 0 ID=Physo128049;Parent=Physo128049;rank=6 scaffold_3 . CDS 1035280 1035460 . - 0 ID=Physo128049;Parent=Physo128049;rank=5 scaffold_3 . CDS 1035536 1035651 . - 0 ID=Physo128049;Parent=Physo128049;rank=4 scaffold_3 . CDS 1035729 1035830 . - 0 ID=Physo128049;Parent=Physo128049;rank=3 scaffold_3 . CDS 1035976 1036159 . - 0 ID=Physo128049;Parent=Physo128049;rank=2 scaffold_3 . CDS 1036223 1036260 . - 0 ID=Physo128049;Parent=Physo128049;rank=1 scaffold_3 . exon 1035003 1035077 . - . ID=Physo128049.7;Parent=Physo128049;constitutive=1;rank=7 scaffold_3 . exon 1035144 1035221 . - . ID=Physo128049.6;Parent=Physo128049;constitutive=1;rank=6 scaffold_3 . exon 1035280 1035460 . - . ID=Physo128049.5;Parent=Physo128049;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . exon 1035536 1035651 . - . ID=Physo128049.4;Parent=Physo128049;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_3 . exon 1035729 1035830 . - . ID=Physo128049.3;Parent=Physo128049;constitutive=1;rank=3 scaffold_3 . exon 1035976 1036159 . - . ID=Physo128049.2;Parent=Physo128049;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . exon 1036223 1036260 . - . ID=Physo128049.1;Parent=Physo128049;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 1036663 1038294 . + . ID=Physo128050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30259;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1036663 1038294 . + . ID=Physo128050;Parent=Physo128050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1036663 1038294 . + 0 ID=Physo128050;Parent=Physo128050;rank=1 scaffold_3 . exon 1036663 1038294 . + . ID=Physo128050.1;Parent=Physo128050;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1038587 1039461 . - . ID=Physo128051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30260;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1038587 1039461 . - . ID=Physo128051;Parent=Physo128051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1038587 1038606 . - 0 ID=Physo128051;Parent=Physo128051;rank=2 scaffold_3 . exon 1038587 1038606 . - . ID=Physo128051.2;Parent=Physo128051;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1038636 1039461 . - 0 ID=Physo128051;Parent=Physo128051;rank=1 scaffold_3 . exon 1038636 1039461 . - . ID=Physo128051.1;Parent=Physo128051;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 1039601 1043730 . + . ID=Physo128052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30261;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1039601 1043730 . + . ID=Physo128052;Parent=Physo128052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1039601 1040625 . + 0 ID=Physo128052;Parent=Physo128052;rank=1 scaffold_3 . exon 1039601 1040625 . + . ID=Physo128052.1;Parent=Physo128052;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1040695 1043552 . + 0 ID=Physo128052;Parent=Physo128052;rank=2 scaffold_3 . exon 1040695 1043552 . + . ID=Physo128052.2;Parent=Physo128052;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1043654 1043730 . + 0 ID=Physo128052;Parent=Physo128052;rank=3 scaffold_3 . exon 1043654 1043730 . + . ID=Physo128052.3;Parent=Physo128052;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 ensembl protein_coding_gene 1043938 1045264 . - . ID=Physo155413;biotype=protein_coding;external_name=C_scaffold_3000083;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1043938 1045264 . - . ID=Physo155413;Parent=Physo155413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1043938 1044098 . - 0 ID=Physo155413;Parent=Physo155413;rank=7 scaffold_3 . exon 1043938 1044098 . - . ID=Physo155413.7;Parent=Physo155413;constitutive=1;ensembl_phase=1;rank=7 scaffold_3 . CDS 1044169 1044345 . - 0 ID=Physo155413;Parent=Physo155413;rank=6 scaffold_3 . exon 1044169 1044345 . - . ID=Physo155413.6;Parent=Physo155413;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_3 . CDS 1044420 1044576 . - 0 ID=Physo155413;Parent=Physo155413;rank=5 scaffold_3 . exon 1044420 1044576 . - . ID=Physo155413.5;Parent=Physo155413;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_3 . CDS 1044636 1044720 . - 0 ID=Physo155413;Parent=Physo155413;rank=4 scaffold_3 . exon 1044636 1044720 . - . ID=Physo155413.4;Parent=Physo155413;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 1044788 1044882 . - 0 ID=Physo155413;Parent=Physo155413;rank=3 scaffold_3 . exon 1044788 1044882 . - . ID=Physo155413.3;Parent=Physo155413;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 1044932 1045099 . - 0 ID=Physo155413;Parent=Physo155413;rank=2 scaffold_3 . CDS 1045163 1045264 . - 0 ID=Physo155413;Parent=Physo155413;rank=1 scaffold_3 . biological_region 1045266 1045270 0.999 - . logic_name=eponine scaffold_3 . biological_region 1045401 1045401 0.999 - . logic_name=eponine scaffold_3 . biological_region 1047422 1047427 0.999 + . logic_name=eponine scaffold_3 . biological_region 1047721 1047724 0.999 - . logic_name=eponine scaffold_3 . biological_region 1048553 1048557 0.999 - . logic_name=eponine scaffold_3 . biological_region 1048870 1048870 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1050109 1050117 . ? . description=dust scaffold_3 . repeat_region 1050879 1050887 . ? . description=dust scaffold_3 . repeat_region 1051786 1051830 . ? . description=trf scaffold_3 . repeat_region 1051801 1051853 . ? . description=trf scaffold_3 . biological_region 1051885 1051889 0.999 - . logic_name=eponine scaffold_3 . biological_region 1052588 1052594 0.999 + . logic_name=eponine scaffold_3 . biological_region 1052831 1052836 0.999 - . logic_name=eponine scaffold_3 . biological_region 1053059 1053061 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1053433 1053447 . ? . description=dust scaffold_3 ensembl protein_coding_gene 1052318 1053378 . + . ID=Physo108234;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30023;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1052318 1053378 . + . ID=Physo108234;Parent=Physo108234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1052318 1053169 . + 0 ID=Physo108234;Parent=Physo108234;rank=1 scaffold_3 . exon 1052318 1053169 . + . ID=Physo108234.1;Parent=Physo108234;constitutive=1;rank=1 scaffold_3 . CDS 1053265 1053378 . + 0 ID=Physo108234;Parent=Physo108234;rank=2 scaffold_3 . exon 1053265 1053378 . + . ID=Physo108234.2;Parent=Physo108234;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 1051411 1051950 . + . ID=Physo128055;biotype=protein_coding;description=Putative elicitin protein SOJ3X [Source:UniProtKB/TrEMBL%3BAcc:Q2N081];external_name=estExt_fgenesh1_pg.C_30264;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1051411 1051950 . + . ID=Physo128055;Parent=Physo128055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1051411 1051950 . + 0 ID=Physo128055;Parent=Physo128055;rank=1 scaffold_3 . exon 1051411 1051950 . + . ID=Physo128055.1;Parent=Physo128055;constitutive=1;rank=1 scaffold_3 . exon 1044932 1045099 . - . ID=Physo155413.2;Parent=Physo155413;constitutive=1;rank=2 scaffold_3 . exon 1045163 1045264 . - . ID=Physo155413.1;Parent=Physo155413;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1045534 1049043 . - . ID=Physo155414;biotype=protein_coding;external_name=C_scaffold_3000084;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1045534 1049043 . - . ID=Physo155414;Parent=Physo155414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1045534 1046253 . - 0 ID=Physo155414;Parent=Physo155414;rank=11 scaffold_3 . exon 1045534 1046253 . - . ID=Physo155414.11;Parent=Physo155414;constitutive=1;rank=11 scaffold_3 . CDS 1046278 1046781 . - 0 ID=Physo155414;Parent=Physo155414;rank=10 scaffold_3 . exon 1046278 1046781 . - . ID=Physo155414.10;Parent=Physo155414;constitutive=1;rank=10 scaffold_3 . CDS 1046856 1047081 . - 0 ID=Physo155414;Parent=Physo155414;rank=9 scaffold_3 . exon 1046856 1047081 . - . ID=Physo155414.9;Parent=Physo155414;constitutive=1;ensembl_phase=2;rank=9 scaffold_3 . CDS 1047117 1047225 . - 0 ID=Physo155414;Parent=Physo155414;rank=8 scaffold_3 . exon 1047117 1047225 . - . ID=Physo155414.8;Parent=Physo155414;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_3 . CDS 1047273 1047708 . - 0 ID=Physo155414;Parent=Physo155414;rank=7 scaffold_3 . exon 1047273 1047708 . - . ID=Physo155414.7;Parent=Physo155414;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_3 . CDS 1047767 1047892 . - 0 ID=Physo155414;Parent=Physo155414;rank=6 scaffold_3 . exon 1047767 1047892 . - . ID=Physo155414.6;Parent=Physo155414;constitutive=1;rank=6 scaffold_3 . CDS 1047919 1048197 . - 0 ID=Physo155414;Parent=Physo155414;rank=5 scaffold_3 . exon 1047919 1048197 . - . ID=Physo155414.5;Parent=Physo155414;constitutive=1;rank=5 scaffold_3 . CDS 1048223 1048260 . - 0 ID=Physo155414;Parent=Physo155414;rank=4 scaffold_3 . exon 1048223 1048260 . - . ID=Physo155414.4;Parent=Physo155414;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 1048307 1048317 . - 0 ID=Physo155414;Parent=Physo155414;rank=3 scaffold_3 . exon 1048307 1048317 . - . ID=Physo155414.3;Parent=Physo155414;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 1048445 1048713 . - 0 ID=Physo155414;Parent=Physo155414;rank=2 scaffold_3 . exon 1048445 1048713 . - . ID=Physo155414.2;Parent=Physo155414;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 1048753 1049043 . - 0 ID=Physo155414;Parent=Physo155414;rank=1 scaffold_3 . exon 1048753 1049043 . - . ID=Physo155414.1;Parent=Physo155414;constitutive=1;rank=1 scaffold_3 . repeat_region 1055565 1055734 . + . description=GypsyPi-1c_LTR scaffold_3 . repeat_region 1055737 1060344 . + . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 1060345 1063435 . + . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 1063436 1063739 . + . description=GypsyPi-1c_LTR scaffold_3 ensembl protein_coding_gene 1055824 1060508 . + . ID=Physo128057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30266;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1055824 1060508 . + . ID=Physo128057;Parent=Physo128057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1055824 1056060 . + 0 ID=Physo128057;Parent=Physo128057;rank=1 scaffold_3 . exon 1055824 1056060 . + . ID=Physo128057.1;Parent=Physo128057;constitutive=1;rank=1 scaffold_3 . CDS 1056259 1056824 . + 0 ID=Physo128057;Parent=Physo128057;rank=2 scaffold_3 . exon 1056259 1056824 . + . ID=Physo128057.2;Parent=Physo128057;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 1056860 1059068 . + 0 ID=Physo128057;Parent=Physo128057;rank=3 scaffold_3 . exon 1056860 1059068 . + . ID=Physo128057.3;Parent=Physo128057;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 1059366 1060208 . + 0 ID=Physo128057;Parent=Physo128057;rank=4 scaffold_3 . exon 1059366 1060208 . + . ID=Physo128057.4;Parent=Physo128057;constitutive=1;rank=4 scaffold_3 . CDS 1060254 1060508 . + 0 ID=Physo128057;Parent=Physo128057;rank=5 scaffold_3 . exon 1060254 1060508 . + . ID=Physo128057.5;Parent=Physo128057;constitutive=1;rank=5 scaffold_3 ensembl protein_coding_gene 1061032 1063249 . - . ID=Physo128058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30267;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1061032 1063249 . - . ID=Physo128058;Parent=Physo128058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1061032 1061154 . - 0 ID=Physo128058;Parent=Physo128058;rank=2 scaffold_3 . exon 1061032 1061154 . - . ID=Physo128058.2;Parent=Physo128058;constitutive=1;rank=2 scaffold_3 . CDS 1061195 1063249 . - 0 ID=Physo128058;Parent=Physo128058;rank=1 scaffold_3 . exon 1061195 1063249 . - . ID=Physo128058.1;Parent=Physo128058;constitutive=1;rank=1 scaffold_3 . repeat_region 1067192 1089798 . ? . description=dust scaffold_3 . repeat_region 1067192 1089798 . ? . description=dust scaffold_3 . repeat_region 1089799 1090002 . ? . description=dust scaffold_3 . biological_region 1090377 1090379 0.999 + . logic_name=eponine scaffold_3 . biological_region 1090442 1090445 0.999 + . logic_name=eponine scaffold_3 . repeat_region 1090458 1090487 . ? . description=trf scaffold_3 . biological_region 1090549 1090549 0.999 - . logic_name=eponine scaffold_3 . biological_region 1090602 1090602 0.999 - . logic_name=eponine scaffold_3 . biological_region 1093721 1093725 0.999 - . logic_name=eponine scaffold_3 . biological_region 1093931 1093932 0.999 + . logic_name=eponine scaffold_3 . biological_region 1093968 1093971 0.999 - . logic_name=eponine scaffold_3 . biological_region 1094505 1094509 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1090260 1090969 . - . ID=Physo108235;biotype=protein_coding;description=Elicitin proteinPutative elicitin protein SOJ2B [Source:UniProtKB/TrEMBL%3BAcc:Q84UD7];external_name=SOJ2;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1090260 1090969 . - . ID=Physo108235;Parent=Physo108235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1090260 1090969 . - . ID=Physo108235.1;Parent=Physo108235;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1090350 1090934 . - 0 ID=Physo108235;Parent=Physo108235;rank=1 scaffold_3 ensembl protein_coding_gene 1093421 1094716 . - . ID=Physo108236;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30025;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1093421 1094716 . - . ID=Physo108236;Parent=Physo108236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1093421 1094551 . - 0 ID=Physo108236;Parent=Physo108236;rank=2 scaffold_3 . exon 1093421 1094551 . - . ID=Physo108236.2;Parent=Physo108236;constitutive=1;rank=2 scaffold_3 . CDS 1094606 1094716 . - 0 ID=Physo108236;Parent=Physo108236;rank=1 scaffold_3 . exon 1094606 1094716 . - . ID=Physo108236.1;Parent=Physo108236;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1091980 1093199 . + . ID=Physo128060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30269;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1091980 1093199 . + . ID=Physo128060;Parent=Physo128060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1091980 1092790 . + 0 ID=Physo128060;Parent=Physo128060;rank=1 scaffold_3 . exon 1091980 1092790 . + . ID=Physo128060.1;Parent=Physo128060;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1092844 1093199 . + 0 ID=Physo128060;Parent=Physo128060;rank=2 scaffold_3 . exon 1092844 1093199 . + . ID=Physo128060.2;Parent=Physo128060;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . repeat_region 1103106 1103409 . - . description=GypsyPi-1c_LTR scaffold_3 . repeat_region 1103410 1103656 . - . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 1104301 1111084 . - . description=GypsyPi-1c_I-int scaffold_3 ensembl protein_coding_gene 1098388 1099020 . + . ID=Physo108237;biotype=protein_coding;description=Elicitin protein [Source:UniProtKB/TrEMBL%3BAcc:Q84L72];external_name=SOJ3;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1098388 1099020 . + . ID=Physo108237;Parent=Physo108237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1098388 1099020 . + 0 ID=Physo108237;Parent=Physo108237;rank=1 scaffold_3 . exon 1098388 1099020 . + . ID=Physo108237.1;Parent=Physo108237;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1101781 1102459 . + . ID=Physo108238;biotype=protein_coding;description=Elicitin protein [Source:UniProtKB/TrEMBL%3BAcc:Q84L71];external_name=SOJ6;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1101781 1102459 . + . ID=Physo108238;Parent=Physo108238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1101781 1102459 . + . ID=Physo108238.1;Parent=Physo108238;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1101799 1102353 . + 0 ID=Physo108238;Parent=Physo108238;rank=1 scaffold_3 ensembl protein_coding_gene 1095179 1097487 . - . ID=Physo128062;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30271;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1095179 1097487 . - . ID=Physo128062;Parent=Physo128062;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1095179 1096511 . - 0 ID=Physo128062;Parent=Physo128062;rank=2 scaffold_3 . exon 1095179 1096511 . - . ID=Physo128062.2;Parent=Physo128062;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1097105 1097487 . - 0 ID=Physo128062;Parent=Physo128062;rank=1 scaffold_3 . exon 1097105 1097487 . - . ID=Physo128062.1;Parent=Physo128062;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 1099725 1100821 . - . ID=Physo128064;biotype=protein_coding;description=Putative elicitin protein SOJ3A [Source:UniProtKB/TrEMBL%3BAcc:Q2N084];external_name=estExt_fgenesh1_pg.C_30273;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1099725 1100821 . - . ID=Physo128064;Parent=Physo128064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1099725 1100821 . - . ID=Physo128064.1;Parent=Physo128064;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1099805 1100380 . - 0 ID=Physo128064;Parent=Physo128064;rank=1 scaffold_3 ensembl protein_coding_gene 1103596 1105802 . + . ID=Physo128066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30275;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1103596 1105802 . + . ID=Physo128066;Parent=Physo128066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1103596 1104542 . + 0 ID=Physo128066;Parent=Physo128066;rank=1 scaffold_3 . exon 1103596 1104542 . + . ID=Physo128066.1;Parent=Physo128066;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1104589 1105433 . + 0 ID=Physo128066;Parent=Physo128066;rank=2 scaffold_3 . CDS 1105471 1105802 . + 0 ID=Physo128066;Parent=Physo128066;rank=3 scaffold_3 . biological_region 1105642 1105646 0.999 - . logic_name=eponine scaffold_3 . biological_region 1105693 1105696 0.999 - . logic_name=eponine scaffold_3 . biological_region 1106375 1106382 0.999 + . logic_name=eponine scaffold_3 . biological_region 1108068 1108069 0.999 + . logic_name=eponine scaffold_3 . biological_region 1108138 1108140 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1108975 1109062 . ? . description=trf scaffold_3 . repeat_region 1108980 1109082 . ? . description=trf scaffold_3 . repeat_region 1109081 1109251 . ? . description=trf scaffold_3 . biological_region 1110562 1110565 0.999 + . logic_name=eponine scaffold_3 . biological_region 1110580 1110583 0.999 - . logic_name=eponine scaffold_3 . biological_region 1110840 1110841 0.999 - . logic_name=eponine scaffold_3 . biological_region 1112890 1112892 0.999 - . logic_name=eponine scaffold_3 . biological_region 1112931 1112932 0.999 + . logic_name=eponine scaffold_3 . biological_region 1112993 1112994 0.999 + . logic_name=eponine scaffold_3 . biological_region 1113342 1113344 0.999 + . logic_name=eponine scaffold_3 . biological_region 1113399 1113403 0.999 + . logic_name=eponine scaffold_3 . biological_region 1113468 1113472 0.999 + . logic_name=eponine scaffold_3 . biological_region 1113495 1113500 0.999 - . logic_name=eponine scaffold_3 . exon 1104589 1105433 . + . ID=Physo128066.2;Parent=Physo128066;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . exon 1105471 1105802 . + . ID=Physo128066.3;Parent=Physo128066;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 ensembl protein_coding_gene 1106085 1110997 . - . ID=Physo128067;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30276;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1106085 1110997 . - . ID=Physo128067;Parent=Physo128067;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1106085 1106093 . - 0 ID=Physo128067;Parent=Physo128067;rank=7 scaffold_3 . exon 1106085 1106093 . - . ID=Physo128067.7;Parent=Physo128067;constitutive=1;rank=7 scaffold_3 . CDS 1106140 1106588 . - 0 ID=Physo128067;Parent=Physo128067;rank=6 scaffold_3 . exon 1106140 1106588 . - . ID=Physo128067.6;Parent=Physo128067;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . CDS 1106636 1107476 . - 0 ID=Physo128067;Parent=Physo128067;rank=5 scaffold_3 . exon 1106636 1107476 . - . ID=Physo128067.5;Parent=Physo128067;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_3 . CDS 1107763 1109062 . - 0 ID=Physo128067;Parent=Physo128067;rank=4 scaffold_3 . exon 1107763 1109062 . - . ID=Physo128067.4;Parent=Physo128067;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 1109223 1109281 . - 0 ID=Physo128067;Parent=Physo128067;rank=3 scaffold_3 . exon 1109223 1109281 . - . ID=Physo128067.3;Parent=Physo128067;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 1109328 1109961 . - 0 ID=Physo128067;Parent=Physo128067;rank=2 scaffold_3 . exon 1109328 1109961 . - . ID=Physo128067.2;Parent=Physo128067;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1109997 1110997 . - 0 ID=Physo128067;Parent=Physo128067;rank=1 scaffold_3 . exon 1109997 1110997 . - . ID=Physo128067.1;Parent=Physo128067;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 1111565 1116364 . + . ID=Physo128068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30277;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1111565 1116364 . + . ID=Physo128068;Parent=Physo128068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1111565 1112066 . + 0 ID=Physo128068;Parent=Physo128068;rank=1 scaffold_3 . exon 1111565 1112066 . + . ID=Physo128068.1;Parent=Physo128068;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1112539 1113004 . + 0 ID=Physo128068;Parent=Physo128068;rank=2 scaffold_3 . exon 1112539 1113004 . + . ID=Physo128068.2;Parent=Physo128068;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 1113379 1114138 . + 0 ID=Physo128068;Parent=Physo128068;rank=3 scaffold_3 . exon 1113379 1114138 . + . ID=Physo128068.3;Parent=Physo128068;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 1114242 1114646 . + 0 ID=Physo128068;Parent=Physo128068;rank=4 scaffold_3 . exon 1114242 1114646 . + . ID=Physo128068.4;Parent=Physo128068;constitutive=1;rank=4 scaffold_3 . CDS 1114676 1116364 . + 0 ID=Physo128068;Parent=Physo128068;rank=5 scaffold_3 . repeat_region 1114129 1116430 . + . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 1116649 1116927 . + . description=GypsyPi-1c_I-int scaffold_3 ensembl protein_coding_gene 1121551 1121814 . - . ID=Physo110674;biotype=protein_coding;external_name=estExt_Genewise1.C_30204;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1121551 1121814 . - . ID=Physo110674;Parent=Physo110674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1121551 1121775 . - 0 ID=Physo110674;Parent=Physo110674;rank=1 scaffold_3 . exon 1121551 1121814 . - . ID=Physo110674.1;Parent=Physo110674;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . exon 1114676 1116364 . + . ID=Physo128068.5;Parent=Physo128068;constitutive=1;rank=5 scaffold_3 ensembl protein_coding_gene 1116944 1118450 . - . ID=Physo128069;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30278;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1116944 1118450 . - . ID=Physo128069;Parent=Physo128069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1116944 1117138 . - 0 ID=Physo128069;Parent=Physo128069;rank=4 scaffold_3 . exon 1116944 1117138 . - . ID=Physo128069.4;Parent=Physo128069;constitutive=1;rank=4 scaffold_3 . CDS 1117203 1117259 . - 0 ID=Physo128069;Parent=Physo128069;rank=3 scaffold_3 . exon 1117203 1117259 . - . ID=Physo128069.3;Parent=Physo128069;constitutive=1;rank=3 scaffold_3 . CDS 1117472 1117949 . - 0 ID=Physo128069;Parent=Physo128069;rank=2 scaffold_3 . exon 1117472 1117949 . - . ID=Physo128069.2;Parent=Physo128069;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1118056 1118450 . - 0 ID=Physo128069;Parent=Physo128069;rank=1 scaffold_3 . exon 1118056 1118450 . - . ID=Physo128069.1;Parent=Physo128069;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 1119233 1120473 . + . ID=Physo128070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30279;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1119233 1120473 . + . ID=Physo128070;Parent=Physo128070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1119233 1119523 . + 0 ID=Physo128070;Parent=Physo128070;rank=1 scaffold_3 . exon 1119233 1119523 . + . ID=Physo128070.1;Parent=Physo128070;constitutive=1;rank=1 scaffold_3 . CDS 1119554 1119940 . + 0 ID=Physo128070;Parent=Physo128070;rank=2 scaffold_3 . exon 1119554 1119940 . + . ID=Physo128070.2;Parent=Physo128070;constitutive=1;rank=2 scaffold_3 . CDS 1120225 1120473 . + 0 ID=Physo128070;Parent=Physo128070;rank=3 scaffold_3 . exon 1120225 1120473 . + . ID=Physo128070.3;Parent=Physo128070;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 1122395 1124394 . - . ID=Physo128071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30280;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1122395 1124394 . - . ID=Physo128071;Parent=Physo128071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1122395 1122405 . - 0 ID=Physo128071;Parent=Physo128071;rank=5 scaffold_3 . exon 1122395 1122405 . - . ID=Physo128071.5;Parent=Physo128071;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 1122471 1122630 . - 0 ID=Physo128071;Parent=Physo128071;rank=4 scaffold_3 . exon 1122471 1122630 . - . ID=Physo128071.4;Parent=Physo128071;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . CDS 1122666 1123283 . - 0 ID=Physo128071;Parent=Physo128071;rank=3 scaffold_3 . exon 1122666 1123283 . - . ID=Physo128071.3;Parent=Physo128071;constitutive=1;rank=3 scaffold_3 . CDS 1123336 1123539 . - 0 ID=Physo128071;Parent=Physo128071;rank=2 scaffold_3 . exon 1123336 1123539 . - . ID=Physo128071.2;Parent=Physo128071;constitutive=1;rank=2 scaffold_3 . CDS 1123981 1124394 . - 0 ID=Physo128071;Parent=Physo128071;rank=1 scaffold_3 . exon 1123981 1124394 . - . ID=Physo128071.1;Parent=Physo128071;constitutive=1;rank=1 scaffold_3 . repeat_region 1124577 1124586 . ? . description=dust scaffold_3 . repeat_region 1126766 1126817 . ? . description=trf scaffold_3 . repeat_region 1127503 1127526 . ? . description=dust scaffold_3 . repeat_region 1127503 1127530 . ? . description=trf scaffold_3 . repeat_region 1128521 1128530 . ? . description=dust scaffold_3 . repeat_region 1129042 1129052 . ? . description=dust scaffold_3 . repeat_region 1129098 1137895 . ? . description=dust scaffold_3 ensembl protein_coding_gene 1127170 1127550 . - . ID=Physo108239;biotype=protein_coding;description=Putative elicitin protein SOJ1F [Source:UniProtKB/TrEMBL%3BAcc:Q2N088];external_name=estExt_fgenesh1_pm.C_30028;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1127170 1127550 . - . ID=Physo108239;Parent=Physo108239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1127170 1127550 . - 0 ID=Physo108239;Parent=Physo108239;rank=1 scaffold_3 . exon 1127170 1127550 . - . ID=Physo108239.1;Parent=Physo108239;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1127982 1128542 . - . ID=Physo110682;biotype=protein_coding;external_name=estExt_Genewise1.C_30212;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1127982 1128542 . - . ID=Physo110682;Parent=Physo110682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1127982 1128542 . - . ID=Physo110682.1;Parent=Physo110682;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1128032 1128541 . - 0 ID=Physo110682;Parent=Physo110682;rank=1 scaffold_3 . biological_region 1138653 1138654 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1138442 1138804 . + . ID=Physo110691;biotype=protein_coding;description=Putative elicitin protein SOJ1E [Source:UniProtKB/TrEMBL%3BAcc:Q2N089];external_name=estExt_Genewise1.C_30221;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1138442 1138804 . + . ID=Physo110691;Parent=Physo110691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1138442 1138804 . + 0 ID=Physo110691;Parent=Physo110691;rank=1 scaffold_3 . exon 1138442 1138804 . + . ID=Physo110691.1;Parent=Physo110691;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1142002 1148331 . - . ID=Physo110698;biotype=protein_coding;external_name=estExt_Genewise1.C_30228;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1142002 1148331 . - . ID=Physo110698;Parent=Physo110698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1142002 1142181 . - 0 ID=Physo110698;Parent=Physo110698;rank=2 scaffold_3 . exon 1142002 1142181 . - . ID=Physo110698.2;Parent=Physo110698;constitutive=1;rank=2 scaffold_3 . CDS 1148008 1148331 . - 0 ID=Physo110698;Parent=Physo110698;rank=1 scaffold_3 ensembl protein_coding_gene 1140569 1141127 . + . ID=Physo128075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30284;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1140569 1141127 . + . ID=Physo128075;Parent=Physo128075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1140569 1141127 . + . ID=Physo128075.1;Parent=Physo128075;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1140570 1141073 . + 0 ID=Physo128075;Parent=Physo128075;rank=1 scaffold_3 . repeat_region 1144454 1144576 . ? . description=trf scaffold_3 . repeat_region 1150460 1150506 . ? . description=trf scaffold_3 . repeat_region 1150771 1150833 . ? . description=trf scaffold_3 . repeat_region 1151306 1151329 . ? . description=trf scaffold_3 . exon 1148008 1148331 . - . ID=Physo110698.1;Parent=Physo110698;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1150374 1157926 . + . ID=Physo128077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30286;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1150374 1157926 . + . ID=Physo128077;Parent=Physo128077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1150374 1150883 . + 0 ID=Physo128077;Parent=Physo128077;rank=1 scaffold_3 . exon 1150374 1150883 . + . ID=Physo128077.1;Parent=Physo128077;constitutive=1;rank=1 scaffold_3 . CDS 1150920 1151303 . + 0 ID=Physo128077;Parent=Physo128077;rank=2 scaffold_3 . exon 1150920 1151303 . + . ID=Physo128077.2;Parent=Physo128077;constitutive=1;rank=2 scaffold_3 . CDS 1151414 1155569 . + 0 ID=Physo128077;Parent=Physo128077;rank=3 scaffold_3 . exon 1151414 1155569 . + . ID=Physo128077.3;Parent=Physo128077;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 1155593 1155752 . + 0 ID=Physo128077;Parent=Physo128077;rank=4 scaffold_3 . CDS 1155795 1156038 . + 0 ID=Physo128077;Parent=Physo128077;rank=5 scaffold_3 . CDS 1156275 1156306 . + 0 ID=Physo128077;Parent=Physo128077;rank=6 scaffold_3 . CDS 1156538 1157765 . + 0 ID=Physo128077;Parent=Physo128077;rank=7 scaffold_3 . CDS 1157837 1157926 . + 0 ID=Physo128077;Parent=Physo128077;rank=8 scaffold_3 . biological_region 1154557 1154560 0.999 + . logic_name=eponine scaffold_3 . biological_region 1156885 1156891 0.999 + . logic_name=eponine scaffold_3 . biological_region 1156889 1156894 0.999 - . logic_name=eponine scaffold_3 . biological_region 1157372 1157373 0.999 + . logic_name=eponine scaffold_3 . biological_region 1158256 1158256 0.999 - . logic_name=eponine scaffold_3 . biological_region 1159588 1159591 0.999 - . logic_name=eponine scaffold_3 . biological_region 1160016 1160020 0.999 - . logic_name=eponine scaffold_3 . biological_region 1160019 1160020 0.999 + . logic_name=eponine scaffold_3 . biological_region 1160395 1160398 0.999 + . logic_name=eponine scaffold_3 . biological_region 1160744 1160748 0.999 + . logic_name=eponine scaffold_3 . repeat_region 1162859 1162867 . ? . description=dust scaffold_3 . repeat_region 1163749 1163798 . ? . description=dust scaffold_3 . exon 1155593 1155752 . + . ID=Physo128077.4;Parent=Physo128077;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_3 . exon 1155795 1156038 . + . ID=Physo128077.5;Parent=Physo128077;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . exon 1156275 1156306 . + . ID=Physo128077.6;Parent=Physo128077;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_3 . exon 1156538 1157765 . + . ID=Physo128077.7;Parent=Physo128077;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 . exon 1157837 1157926 . + . ID=Physo128077.8;Parent=Physo128077;constitutive=1;rank=8 scaffold_3 ensembl protein_coding_gene 1158284 1158667 . + . ID=Physo128078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30287;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1158284 1158667 . + . ID=Physo128078;Parent=Physo128078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1158284 1158667 . + 0 ID=Physo128078;Parent=Physo128078;rank=1 scaffold_3 . exon 1158284 1158667 . + . ID=Physo128078.1;Parent=Physo128078;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1158859 1160481 . - . ID=Physo128079;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30288;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1158859 1160481 . - . ID=Physo128079;Parent=Physo128079;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1158859 1159026 . - 0 ID=Physo128079;Parent=Physo128079;rank=4 scaffold_3 . exon 1158859 1159026 . - . ID=Physo128079.4;Parent=Physo128079;constitutive=1;rank=4 scaffold_3 . CDS 1159096 1159735 . - 0 ID=Physo128079;Parent=Physo128079;rank=3 scaffold_3 . exon 1159096 1159735 . - . ID=Physo128079.3;Parent=Physo128079;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 1159901 1160253 . - 0 ID=Physo128079;Parent=Physo128079;rank=2 scaffold_3 . exon 1159901 1160253 . - . ID=Physo128079.2;Parent=Physo128079;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 1160290 1160481 . - 0 ID=Physo128079;Parent=Physo128079;rank=1 scaffold_3 . exon 1160290 1160481 . - . ID=Physo128079.1;Parent=Physo128079;constitutive=1;rank=1 scaffold_3 . repeat_region 1164624 1164678 . ? . description=trf scaffold_3 . repeat_region 1168046 1168110 . ? . description=trf scaffold_3 . repeat_region 1168046 1168110 . ? . description=trf scaffold_3 . repeat_region 1168581 1168607 . ? . description=trf scaffold_3 ensembl protein_coding_gene 1166512 1166880 . + . ID=Physo110709;biotype=protein_coding;description=Putative elicitin protein SOJ1D [Source:UniProtKB/TrEMBL%3BAcc:Q2N090];external_name=estExt_Genewise1.C_30239;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1166512 1166880 . + . ID=Physo110709;Parent=Physo110709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1166512 1166880 . + 0 ID=Physo110709;Parent=Physo110709;rank=1 scaffold_3 . exon 1166512 1166880 . + . ID=Physo110709.1;Parent=Physo110709;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1165020 1165551 . + . ID=Physo110713;biotype=protein_coding;external_name=estExt_Genewise1.C_30243;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1165020 1165551 . + . ID=Physo110713;Parent=Physo110713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1165020 1165551 . + . ID=Physo110713.1;Parent=Physo110713;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1165021 1165488 . + 0 ID=Physo110713;Parent=Physo110713;rank=1 scaffold_3 ensembl protein_coding_gene 1167958 1168540 . + . ID=Physo128082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30291;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1167958 1168540 . + . ID=Physo128082;Parent=Physo128082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1167958 1168035 . + 0 ID=Physo128082;Parent=Physo128082;rank=1 scaffold_3 . exon 1167958 1168035 . + . ID=Physo128082.1;Parent=Physo128082;constitutive=1;rank=1 scaffold_3 . CDS 1168164 1168304 . + 0 ID=Physo128082;Parent=Physo128082;rank=2 scaffold_3 . exon 1168164 1168304 . + . ID=Physo128082.2;Parent=Physo128082;constitutive=1;rank=2 scaffold_3 . CDS 1168388 1168540 . + 0 ID=Physo128082;Parent=Physo128082;rank=3 scaffold_3 . exon 1168388 1168540 . + . ID=Physo128082.3;Parent=Physo128082;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 1170042 1171608 . + . ID=Physo128083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30292;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1170042 1171608 . + . ID=Physo128083;Parent=Physo128083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1170042 1171608 . + . ID=Physo128083.1;Parent=Physo128083;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1170343 1171608 . + 0 ID=Physo128083;Parent=Physo128083;rank=1 scaffold_3 ensembl protein_coding_gene 1171751 1176172 . - . ID=Physo128084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30293;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1171751 1176172 . - . ID=Physo128084;Parent=Physo128084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1171751 1176172 . - 0 ID=Physo128084;Parent=Physo128084;rank=1 scaffold_3 . exon 1171751 1176172 . - . ID=Physo128084.1;Parent=Physo128084;constitutive=1;rank=1 scaffold_3 . biological_region 1174557 1174560 0.999 + . logic_name=eponine scaffold_3 . biological_region 1175158 1175160 0.999 - . logic_name=eponine scaffold_3 . biological_region 1175464 1175468 0.999 + . logic_name=eponine scaffold_3 . biological_region 1175484 1175486 0.999 + . logic_name=eponine scaffold_3 . biological_region 1175657 1175660 0.999 + . logic_name=eponine scaffold_3 . biological_region 1175658 1175662 0.999 - . logic_name=eponine scaffold_3 . biological_region 1175792 1175794 0.999 + . logic_name=eponine scaffold_3 . biological_region 1175929 1175934 0.999 + . logic_name=eponine scaffold_3 . biological_region 1175955 1175961 0.999 + . logic_name=eponine scaffold_3 . biological_region 1175984 1175987 0.999 - . logic_name=eponine scaffold_3 . biological_region 1175990 1175994 0.999 + . logic_name=eponine scaffold_3 . biological_region 1176040 1176045 0.999 + . logic_name=eponine scaffold_3 . biological_region 1176115 1176121 0.999 - . logic_name=eponine scaffold_3 . biological_region 1176129 1176131 0.999 + . logic_name=eponine scaffold_3 . biological_region 1176169 1176175 0.999 + . logic_name=eponine scaffold_3 . biological_region 1176206 1176208 0.999 - . logic_name=eponine scaffold_3 . biological_region 1177713 1177719 0.999 + . logic_name=eponine scaffold_3 . biological_region 1178105 1178105 0.999 - . logic_name=eponine scaffold_3 . biological_region 1179810 1179812 0.999 + . logic_name=eponine scaffold_3 . biological_region 1179839 1179841 0.999 - . logic_name=eponine scaffold_3 . biological_region 1184123 1184127 0.999 + . logic_name=eponine scaffold_3 . biological_region 1184133 1184137 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1176457 1198116 . - . ID=Physo128085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30294;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1176457 1198116 . - . ID=Physo128085;Parent=Physo128085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1176457 1197414 . - 0 ID=Physo128085;Parent=Physo128085;rank=3 scaffold_3 . exon 1176457 1197414 . - . ID=Physo128085.3;Parent=Physo128085;constitutive=1;rank=3 scaffold_3 . CDS 1197502 1197720 . - 0 ID=Physo128085;Parent=Physo128085;rank=2 scaffold_3 . CDS 1197811 1198116 . - 0 ID=Physo128085;Parent=Physo128085;rank=1 scaffold_3 . biological_region 1195972 1195973 0.999 - . logic_name=eponine scaffold_3 . biological_region 1197000 1197003 0.999 + . logic_name=eponine scaffold_3 . repeat_region 1198853 1198895 . ? . description=trf scaffold_3 . repeat_region 1199764 1199771 . ? . description=dust scaffold_3 . repeat_region 1200443 1200451 . ? . description=dust scaffold_3 . repeat_region 1200642 1200649 . ? . description=dust scaffold_3 . biological_region 1201515 1201519 0.999 + . logic_name=eponine scaffold_3 . biological_region 1201535 1201536 0.999 + . logic_name=eponine scaffold_3 . biological_region 1201631 1201637 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1203178 1203282 . ? . description=trf scaffold_3 . repeat_region 1203337 1205703 . - . description=GypsyPi-1c_I-int scaffold_3 ensembl protein_coding_gene 1176457 1198116 . - . ID=Physo128085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30294;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1176457 1198116 . - . ID=Physo128085;Parent=Physo128085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1176457 1197414 . - 0 ID=Physo128085;Parent=Physo128085;rank=3 scaffold_3 . exon 1176457 1197414 . - . ID=Physo128085.3;Parent=Physo128085;constitutive=1;rank=3 scaffold_3 . CDS 1197502 1197720 . - 0 ID=Physo128085;Parent=Physo128085;rank=2 scaffold_3 . exon 1197502 1197720 . - . ID=Physo128085.2;Parent=Physo128085;constitutive=1;rank=2 scaffold_3 . CDS 1197811 1198116 . - 0 ID=Physo128085;Parent=Physo128085;rank=1 scaffold_3 . exon 1197811 1198116 . - . ID=Physo128085.1;Parent=Physo128085;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1201252 1202781 . + . ID=Physo128086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30295;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1201252 1202781 . + . ID=Physo128086;Parent=Physo128086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1201252 1201712 . + 0 ID=Physo128086;Parent=Physo128086;rank=1 scaffold_3 . exon 1201252 1201712 . + . ID=Physo128086.1;Parent=Physo128086;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1201779 1201911 . + 0 ID=Physo128086;Parent=Physo128086;rank=2 scaffold_3 . exon 1201779 1201911 . + . ID=Physo128086.2;Parent=Physo128086;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1201972 1202292 . + 0 ID=Physo128086;Parent=Physo128086;rank=3 scaffold_3 . exon 1201972 1202292 . + . ID=Physo128086.3;Parent=Physo128086;constitutive=1;rank=3 scaffold_3 . CDS 1202466 1202522 . + 0 ID=Physo128086;Parent=Physo128086;rank=4 scaffold_3 . exon 1202466 1202522 . + . ID=Physo128086.4;Parent=Physo128086;constitutive=1;rank=4 scaffold_3 . CDS 1202593 1202781 . + 0 ID=Physo128086;Parent=Physo128086;rank=5 scaffold_3 . exon 1202593 1202781 . + . ID=Physo128086.5;Parent=Physo128086;constitutive=1;rank=5 scaffold_3 ensembl protein_coding_gene 1203036 1204110 . - . ID=Physo128087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30296;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1203036 1204110 . - . ID=Physo128087;Parent=Physo128087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1203036 1203102 . - 0 ID=Physo128087;Parent=Physo128087;rank=2 scaffold_3 . exon 1203036 1203102 . - . ID=Physo128087.2;Parent=Physo128087;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1203195 1204051 . - 0 ID=Physo128087;Parent=Physo128087;rank=1 scaffold_3 . exon 1203195 1204110 . - . ID=Physo128087.1;Parent=Physo128087;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 1204329 1205096 . - . ID=Physo108243;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30032;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1204329 1205096 . - . ID=Physo108243;Parent=Physo108243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1204329 1205096 . - 0 ID=Physo108243;Parent=Physo108243;rank=1 scaffold_3 . exon 1204329 1205096 . - . ID=Physo108243.1;Parent=Physo108243;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1205200 1206914 . - . ID=Physo128089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30298;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1205200 1206914 . - . ID=Physo128089;Parent=Physo128089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1205200 1206289 . - . ID=Physo128089.2;Parent=Physo128089;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1205202 1206289 . - 0 ID=Physo128089;Parent=Physo128089;rank=2 scaffold_3 . CDS 1206614 1206914 . - 0 ID=Physo128089;Parent=Physo128089;rank=1 scaffold_3 . exon 1206614 1206914 . - . ID=Physo128089.1;Parent=Physo128089;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 1213323 1214577 . - . ID=Physo128090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30299;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1213323 1214577 . - . ID=Physo128090;Parent=Physo128090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1213323 1214141 . - 0 ID=Physo128090;Parent=Physo128090;rank=2 scaffold_3 . exon 1213323 1214141 . - . ID=Physo128090.2;Parent=Physo128090;constitutive=1;rank=2 scaffold_3 . CDS 1214272 1214577 . - 0 ID=Physo128090;Parent=Physo128090;rank=1 scaffold_3 . biological_region 1216641 1216644 0.999 + . logic_name=eponine scaffold_3 . repeat_region 1217804 1218542 . ? . description=trf scaffold_3 . repeat_region 1217836 1217996 . ? . description=trf scaffold_3 . repeat_region 1217854 1217978 . ? . description=trf scaffold_3 . repeat_region 1217872 1217962 . ? . description=trf scaffold_3 . repeat_region 1217907 1217927 . ? . description=trf scaffold_3 . repeat_region 1218079 1218371 . ? . description=trf scaffold_3 . repeat_region 1218115 1218239 . ? . description=trf scaffold_3 . repeat_region 1218133 1218221 . ? . description=trf scaffold_3 . repeat_region 1218168 1218188 . ? . description=trf scaffold_3 . repeat_region 1218214 1218338 . ? . description=trf scaffold_3 . repeat_region 1218232 1218322 . ? . description=trf scaffold_3 . repeat_region 1218267 1218287 . ? . description=trf scaffold_3 . repeat_region 1218698 1218985 . ? . description=trf scaffold_3 . repeat_region 1220337 1220382 . ? . description=trf scaffold_3 . biological_region 1222409 1222415 0.999 + . logic_name=eponine scaffold_3 . biological_region 1222565 1222567 0.999 - . logic_name=eponine scaffold_3 . biological_region 1222600 1222606 0.999 - . logic_name=eponine scaffold_3 . biological_region 1222640 1222640 0.999 - . logic_name=eponine scaffold_3 . biological_region 1222667 1222667 0.999 - . logic_name=eponine scaffold_3 . biological_region 1223183 1223183 0.999 - . logic_name=eponine scaffold_3 . exon 1214272 1214577 . - . ID=Physo128090.1;Parent=Physo128090;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1215357 1216928 . + . ID=Physo128091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30300;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1215357 1216928 . + . ID=Physo128091;Parent=Physo128091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1215357 1215496 . + 0 ID=Physo128091;Parent=Physo128091;rank=1 scaffold_3 . exon 1215357 1215496 . + . ID=Physo128091.1;Parent=Physo128091;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1215572 1216078 . + 0 ID=Physo128091;Parent=Physo128091;rank=2 scaffold_3 . exon 1215572 1216078 . + . ID=Physo128091.2;Parent=Physo128091;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 1216161 1216453 . + 0 ID=Physo128091;Parent=Physo128091;rank=3 scaffold_3 . exon 1216161 1216453 . + . ID=Physo128091.3;Parent=Physo128091;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 1216525 1216928 . + 0 ID=Physo128091;Parent=Physo128091;rank=4 scaffold_3 . exon 1216525 1216928 . + . ID=Physo128091.4;Parent=Physo128091;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 ensembl protein_coding_gene 1222251 1224627 . + . ID=Physo128092;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30301;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1222251 1224627 . + . ID=Physo128092;Parent=Physo128092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1222251 1222897 . + 0 ID=Physo128092;Parent=Physo128092;rank=1 scaffold_3 . exon 1222251 1222897 . + . ID=Physo128092.1;Parent=Physo128092;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1222924 1223116 . + 0 ID=Physo128092;Parent=Physo128092;rank=2 scaffold_3 . exon 1222924 1223116 . + . ID=Physo128092.2;Parent=Physo128092;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1223224 1223444 . + 0 ID=Physo128092;Parent=Physo128092;rank=3 scaffold_3 . exon 1223224 1223444 . + . ID=Physo128092.3;Parent=Physo128092;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 1223769 1223889 . + 0 ID=Physo128092;Parent=Physo128092;rank=4 scaffold_3 . exon 1223769 1223889 . + . ID=Physo128092.4;Parent=Physo128092;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 1223961 1224119 . + 0 ID=Physo128092;Parent=Physo128092;rank=5 scaffold_3 . exon 1223961 1224119 . + . ID=Physo128092.5;Parent=Physo128092;constitutive=1;rank=5 scaffold_3 . CDS 1224151 1224627 . + 0 ID=Physo128092;Parent=Physo128092;rank=6 scaffold_3 . repeat_region 1227525 1227556 . ? . description=dust scaffold_3 . repeat_region 1227734 1227742 . ? . description=dust scaffold_3 . repeat_region 1229944 1229951 . ? . description=dust scaffold_3 . exon 1224151 1224627 . + . ID=Physo128092.6;Parent=Physo128092;constitutive=1;rank=6 scaffold_3 ensembl protein_coding_gene 1224899 1226223 . - . ID=Physo128093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30302;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1224899 1226223 . - . ID=Physo128093;Parent=Physo128093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1224899 1225477 . - 0 ID=Physo128093;Parent=Physo128093;rank=3 scaffold_3 . exon 1224899 1225477 . - . ID=Physo128093.3;Parent=Physo128093;constitutive=1;rank=3 scaffold_3 . CDS 1225540 1225915 . - 0 ID=Physo128093;Parent=Physo128093;rank=2 scaffold_3 . exon 1225540 1225915 . - . ID=Physo128093.2;Parent=Physo128093;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1225982 1226223 . - 0 ID=Physo128093;Parent=Physo128093;rank=1 scaffold_3 . exon 1225982 1226223 . - . ID=Physo128093.1;Parent=Physo128093;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 1231752 1233481 . - . ID=Physo128094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30303;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1231752 1233481 . - . ID=Physo128094;Parent=Physo128094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1231752 1232102 . - 0 ID=Physo128094;Parent=Physo128094;rank=5 scaffold_3 . exon 1231752 1232102 . - . ID=Physo128094.5;Parent=Physo128094;constitutive=1;rank=5 scaffold_3 . CDS 1232149 1232431 . - 0 ID=Physo128094;Parent=Physo128094;rank=4 scaffold_3 . exon 1232149 1232431 . - . ID=Physo128094.4;Parent=Physo128094;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 1232522 1233046 . - 0 ID=Physo128094;Parent=Physo128094;rank=3 scaffold_3 . exon 1232522 1233046 . - . ID=Physo128094.3;Parent=Physo128094;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 1233136 1233314 . - 0 ID=Physo128094;Parent=Physo128094;rank=2 scaffold_3 . exon 1233136 1233314 . - . ID=Physo128094.2;Parent=Physo128094;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 1233359 1233481 . - 0 ID=Physo128094;Parent=Physo128094;rank=1 scaffold_3 . exon 1233359 1233481 . - . ID=Physo128094.1;Parent=Physo128094;constitutive=1;rank=1 scaffold_3 . repeat_region 1234210 1234229 . ? . description=trf scaffold_3 . repeat_region 1234324 1234348 . ? . description=trf scaffold_3 . repeat_region 1238491 1238555 . ? . description=trf scaffold_3 . repeat_region 1240238 1240290 . ? . description=trf scaffold_3 . biological_region 1240354 1240354 0.999 + . logic_name=eponine scaffold_3 . biological_region 1240428 1240433 0.999 + . logic_name=eponine scaffold_3 . biological_region 1240448 1240453 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1239070 1240815 . - . ID=Physo128095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30304;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1239070 1240815 . - . ID=Physo128095;Parent=Physo128095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1239070 1240227 . - . ID=Physo128095.3;Parent=Physo128095;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_3 . CDS 1239161 1240227 . - 0 ID=Physo128095;Parent=Physo128095;rank=3 scaffold_3 . CDS 1240311 1240554 . - 0 ID=Physo128095;Parent=Physo128095;rank=2 scaffold_3 . exon 1240311 1240554 . - . ID=Physo128095.2;Parent=Physo128095;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 1240786 1240815 . - 0 ID=Physo128095;Parent=Physo128095;rank=1 scaffold_3 . exon 1240786 1240815 . - . ID=Physo128095.1;Parent=Physo128095;constitutive=1;rank=1 scaffold_3 . repeat_region 1250883 1250890 . ? . description=dust scaffold_3 . repeat_region 1251384 1251408 . ? . description=dust scaffold_3 . repeat_region 1251978 1251985 . ? . description=dust scaffold_3 . repeat_region 1252086 1252098 . ? . description=dust scaffold_3 . repeat_region 1253590 1253597 . ? . description=dust scaffold_3 ensembl protein_coding_gene 1244871 1245696 . + . ID=Physo128096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30305;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1244871 1245696 . + . ID=Physo128096;Parent=Physo128096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1244871 1245044 . + 0 ID=Physo128096;Parent=Physo128096;rank=1 scaffold_3 . exon 1244871 1245044 . + . ID=Physo128096.1;Parent=Physo128096;constitutive=1;rank=1 scaffold_3 . CDS 1245104 1245310 . + 0 ID=Physo128096;Parent=Physo128096;rank=2 scaffold_3 . exon 1245104 1245310 . + . ID=Physo128096.2;Parent=Physo128096;constitutive=1;rank=2 scaffold_3 . CDS 1245346 1245696 . + 0 ID=Physo128096;Parent=Physo128096;rank=3 scaffold_3 . exon 1245346 1245696 . + . ID=Physo128096.3;Parent=Physo128096;constitutive=1;rank=3 scaffold_3 . biological_region 1256094 1256097 0.999 + . logic_name=eponine scaffold_3 . biological_region 1256212 1256215 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1256323 1256359 . ? . description=trf scaffold_3 . biological_region 1256478 1256479 0.999 + . logic_name=eponine scaffold_3 . repeat_region 1259926 1259945 . ? . description=trf scaffold_3 . biological_region 1260928 1260932 0.999 - . logic_name=eponine scaffold_3 . biological_region 1261875 1261875 0.999 - . logic_name=eponine scaffold_3 . biological_region 1262094 1262100 0.999 + . logic_name=eponine scaffold_3 . biological_region 1262106 1262106 0.999 - . logic_name=eponine scaffold_3 . biological_region 1262158 1262161 0.999 + . logic_name=eponine scaffold_3 . biological_region 1262166 1262169 0.999 - . logic_name=eponine scaffold_3 . biological_region 1262756 1262756 0.999 + . logic_name=eponine scaffold_3 ensembl tRNA_gene 1256250 1256319 . + . ID=EPrPSOG00000000265;biotype=tRNA;description=tRNA-Ile for anticodon UAU [Source:TRNASCAN_SE%3BAcc:tRNA-Ile];external_name=tRNA-Ile;logic_name=ncrna_eg scaffold_3 ensembl transcript 1256250 1256319 . + . ID=EPrPSOT00000000265;Parent=EPrPSOG00000000265;biotype=tRNA;logic_name=ncrna_eg scaffold_3 . exon 1256250 1256319 . + . ID=EPrPSOE00000000265;Parent=EPrPSOT00000000265;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 1259555 1261463 . + . ID=Physo128097;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30306;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1259555 1261463 . + . ID=Physo128097;Parent=Physo128097;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1259555 1259933 . + 0 ID=Physo128097;Parent=Physo128097;rank=1 scaffold_3 . exon 1259555 1259933 . + . ID=Physo128097.1;Parent=Physo128097;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1260043 1261463 . + 0 ID=Physo128097;Parent=Physo128097;rank=2 scaffold_3 . exon 1260043 1261463 . + . ID=Physo128097.2;Parent=Physo128097;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 1261773 1263152 . + . ID=Physo128098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30307;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1261773 1263152 . + . ID=Physo128098;Parent=Physo128098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1261773 1262311 . + 0 ID=Physo128098;Parent=Physo128098;rank=1 scaffold_3 . exon 1261773 1262311 . + . ID=Physo128098.1;Parent=Physo128098;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1262384 1263152 . + 0 ID=Physo128098;Parent=Physo128098;rank=2 scaffold_3 . exon 1262384 1263152 . + . ID=Physo128098.2;Parent=Physo128098;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . repeat_region 1265909 1265919 . ? . description=dust scaffold_3 ensembl protein_coding_gene 1264081 1265680 . + . ID=Physo128099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30308;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1264081 1265680 . + . ID=Physo128099;Parent=Physo128099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1264081 1264180 . + 0 ID=Physo128099;Parent=Physo128099;rank=1 scaffold_3 . exon 1264081 1264180 . + . ID=Physo128099.1;Parent=Physo128099;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1264269 1265680 . + 0 ID=Physo128099;Parent=Physo128099;rank=2 scaffold_3 . exon 1264269 1265680 . + . ID=Physo128099.2;Parent=Physo128099;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 ensembl protein_coding_gene 1267214 1268996 . + . ID=Physo128100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30309;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1267214 1268996 . + . ID=Physo128100;Parent=Physo128100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1267214 1267519 . + 0 ID=Physo128100;Parent=Physo128100;rank=1 scaffold_3 . exon 1267214 1267519 . + . ID=Physo128100.1;Parent=Physo128100;constitutive=1;rank=1 scaffold_3 . CDS 1267599 1268033 . + 0 ID=Physo128100;Parent=Physo128100;rank=2 scaffold_3 . exon 1267599 1268033 . + . ID=Physo128100.2;Parent=Physo128100;constitutive=1;rank=2 scaffold_3 . CDS 1268145 1268996 . + 0 ID=Physo128100;Parent=Physo128100;rank=3 scaffold_3 . exon 1268145 1268996 . + . ID=Physo128100.3;Parent=Physo128100;constitutive=1;rank=3 scaffold_3 ensembl protein_coding_gene 1269506 1270342 . - . ID=Physo128101;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30310;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1269506 1270342 . - . ID=Physo128101;Parent=Physo128101;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1269506 1270342 . - 0 ID=Physo128101;Parent=Physo128101;rank=1 scaffold_3 . exon 1269506 1270342 . - . ID=Physo128101.1;Parent=Physo128101;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1270812 1273641 . + . ID=Physo128102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30311;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1270812 1273641 . + . ID=Physo128102;Parent=Physo128102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1270812 1271580 . + 0 ID=Physo128102;Parent=Physo128102;rank=1 scaffold_3 . exon 1270812 1271580 . + . ID=Physo128102.1;Parent=Physo128102;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1272137 1272153 . + 0 ID=Physo128102;Parent=Physo128102;rank=2 scaffold_3 . exon 1272137 1272153 . + . ID=Physo128102.2;Parent=Physo128102;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1272298 1272747 . + 0 ID=Physo128102;Parent=Physo128102;rank=3 scaffold_3 . exon 1272298 1272747 . + . ID=Physo128102.3;Parent=Physo128102;constitutive=1;rank=3 scaffold_3 . CDS 1273175 1273481 . + 0 ID=Physo128102;Parent=Physo128102;rank=4 scaffold_3 . exon 1273175 1273481 . + . ID=Physo128102.4;Parent=Physo128102;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . CDS 1273601 1273641 . + 0 ID=Physo128102;Parent=Physo128102;rank=5 scaffold_3 . exon 1273601 1273641 . + . ID=Physo128102.5;Parent=Physo128102;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . repeat_region 1278803 1278829 . ? . description=trf scaffold_3 . repeat_region 1279398 1279453 . ? . description=trf scaffold_3 . biological_region 1279867 1279868 0.999 - . logic_name=eponine scaffold_3 . biological_region 1280163 1280163 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1279453 1280043 . + . ID=Physo128103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30312;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1279453 1280043 . + . ID=Physo128103;Parent=Physo128103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1279453 1280043 . + 0 ID=Physo128103;Parent=Physo128103;rank=1 scaffold_3 . exon 1279453 1280043 . + . ID=Physo128103.1;Parent=Physo128103;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1280981 1282336 . + . ID=Physo128104;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30313;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1280981 1282336 . + . ID=Physo128104;Parent=Physo128104;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1280981 1281169 . + 0 ID=Physo128104;Parent=Physo128104;rank=1 scaffold_3 . exon 1280981 1281169 . + . ID=Physo128104.1;Parent=Physo128104;constitutive=1;rank=1 scaffold_3 . CDS 1281668 1281938 . + 0 ID=Physo128104;Parent=Physo128104;rank=2 scaffold_3 . exon 1281668 1281938 . + . ID=Physo128104.2;Parent=Physo128104;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 1282023 1282336 . + 0 ID=Physo128104;Parent=Physo128104;rank=3 scaffold_3 . exon 1282023 1282336 . + . ID=Physo128104.3;Parent=Physo128104;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . repeat_region 1285672 1285733 . ? . description=dust scaffold_3 . repeat_region 1286265 1286277 . ? . description=dust scaffold_3 . repeat_region 1291848 1291855 . ? . description=dust scaffold_3 ensembl protein_coding_gene 1285897 1288215 . + . ID=Physo128107;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30316;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1285897 1288215 . + . ID=Physo128107;Parent=Physo128107;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1285897 1286075 . + . ID=Physo128107.1;Parent=Physo128107;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 . CDS 1285956 1286075 . + 0 ID=Physo128107;Parent=Physo128107;rank=1 scaffold_3 . CDS 1286176 1286247 . + 0 ID=Physo128107;Parent=Physo128107;rank=2 scaffold_3 . exon 1286176 1286247 . + . ID=Physo128107.2;Parent=Physo128107;constitutive=1;rank=2 scaffold_3 . CDS 1286323 1286625 . + 0 ID=Physo128107;Parent=Physo128107;rank=3 scaffold_3 . exon 1286323 1286625 . + . ID=Physo128107.3;Parent=Physo128107;constitutive=1;rank=3 scaffold_3 . CDS 1286700 1287349 . + 0 ID=Physo128107;Parent=Physo128107;rank=4 scaffold_3 . exon 1286700 1287349 . + . ID=Physo128107.4;Parent=Physo128107;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_3 . CDS 1287587 1287650 . + 0 ID=Physo128107;Parent=Physo128107;rank=5 scaffold_3 . exon 1287587 1287650 . + . ID=Physo128107.5;Parent=Physo128107;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 1287718 1288215 . + 0 ID=Physo128107;Parent=Physo128107;rank=6 scaffold_3 . exon 1287718 1288215 . + . ID=Physo128107.6;Parent=Physo128107;constitutive=1;rank=6 scaffold_3 ensembl protein_coding_gene 1291943 1294407 . - . ID=Physo128108;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30317;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1291943 1294407 . - . ID=Physo128108;Parent=Physo128108;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1291943 1292543 . - 0 ID=Physo128108;Parent=Physo128108;rank=2 scaffold_3 . exon 1291943 1292543 . - . ID=Physo128108.2;Parent=Physo128108;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1292822 1294407 . - 0 ID=Physo128108;Parent=Physo128108;rank=1 scaffold_3 . exon 1292822 1294407 . - . ID=Physo128108.1;Parent=Physo128108;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 1283740 1284051 . + . ID=Physo155417;biotype=protein_coding;external_name=C_scaffold_3000087;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1283740 1284051 . + . ID=Physo155417;Parent=Physo155417;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1283740 1284051 . + 0 ID=Physo155417;Parent=Physo155417;rank=1 scaffold_3 . exon 1283740 1284051 . + . ID=Physo155417.1;Parent=Physo155417;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1285067 1285759 . - . ID=Physo155418;biotype=protein_coding;external_name=C_scaffold_3000088;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1285067 1285759 . - . ID=Physo155418;Parent=Physo155418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1285067 1285225 . - 0 ID=Physo155418;Parent=Physo155418;rank=3 scaffold_3 . exon 1285067 1285225 . - . ID=Physo155418.3;Parent=Physo155418;constitutive=1;rank=3 scaffold_3 . CDS 1285298 1285363 . - 0 ID=Physo155418;Parent=Physo155418;rank=2 scaffold_3 . exon 1285298 1285363 . - . ID=Physo155418.2;Parent=Physo155418;constitutive=1;rank=2 scaffold_3 . CDS 1285439 1285759 . - 0 ID=Physo155418;Parent=Physo155418;rank=1 scaffold_3 . exon 1285439 1285759 . - . ID=Physo155418.1;Parent=Physo155418;constitutive=1;rank=1 scaffold_3 . biological_region 1294244 1294248 0.999 + . logic_name=eponine scaffold_3 . biological_region 1294270 1294271 0.999 + . logic_name=eponine scaffold_3 . biological_region 1294304 1294307 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1294612 1294631 . ? . description=trf scaffold_3 . repeat_region 1294809 1294849 . ? . description=trf scaffold_3 . repeat_region 1294879 1294902 . ? . description=trf scaffold_3 . biological_region 1294967 1294974 0.999 + . logic_name=eponine scaffold_3 . biological_region 1295160 1295163 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1296034 1296062 . ? . description=trf scaffold_3 . biological_region 1300385 1300387 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1294537 1296256 . - . ID=Physo108244;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30033;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1294537 1296256 . - . ID=Physo108244;Parent=Physo108244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1294537 1296028 . - . ID=Physo108244.2;Parent=Physo108244;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1294798 1296028 . - 0 ID=Physo108244;Parent=Physo108244;rank=2 scaffold_3 . CDS 1296105 1296187 . - 0 ID=Physo108244;Parent=Physo108244;rank=1 scaffold_3 . exon 1296105 1296256 . - . ID=Physo108244.1;Parent=Physo108244;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 1298391 1300649 . - . ID=Physo108245;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30034;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1298391 1300649 . - . ID=Physo108245;Parent=Physo108245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1298391 1299534 . - 0 ID=Physo108245;Parent=Physo108245;rank=5 scaffold_3 . exon 1298391 1299534 . - . ID=Physo108245.5;Parent=Physo108245;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 1299583 1299875 . - 0 ID=Physo108245;Parent=Physo108245;rank=4 scaffold_3 . exon 1299583 1299875 . - . ID=Physo108245.4;Parent=Physo108245;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_3 . CDS 1299969 1300220 . - 0 ID=Physo108245;Parent=Physo108245;rank=3 scaffold_3 . exon 1299969 1300220 . - . ID=Physo108245.3;Parent=Physo108245;constitutive=1;rank=3 scaffold_3 . CDS 1300288 1300449 . - 0 ID=Physo108245;Parent=Physo108245;rank=2 scaffold_3 . exon 1300288 1300449 . - . ID=Physo108245.2;Parent=Physo108245;constitutive=1;rank=2 scaffold_3 . CDS 1300533 1300649 . - 0 ID=Physo108245;Parent=Physo108245;rank=1 scaffold_3 . exon 1300533 1300649 . - . ID=Physo108245.1;Parent=Physo108245;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1296483 1298255 . - . ID=Physo128110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30319;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1296483 1298255 . - . ID=Physo128110;Parent=Physo128110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1296483 1296535 . - 0 ID=Physo128110;Parent=Physo128110;rank=5 scaffold_3 . exon 1296483 1296535 . - . ID=Physo128110.5;Parent=Physo128110;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 1296591 1296872 . - 0 ID=Physo128110;Parent=Physo128110;rank=4 scaffold_3 . exon 1296591 1296872 . - . ID=Physo128110.4;Parent=Physo128110;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_3 . CDS 1296910 1296943 . - 0 ID=Physo128110;Parent=Physo128110;rank=3 scaffold_3 . exon 1296910 1296943 . - . ID=Physo128110.3;Parent=Physo128110;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 1296973 1297647 . - 0 ID=Physo128110;Parent=Physo128110;rank=2 scaffold_3 . exon 1296973 1297647 . - . ID=Physo128110.2;Parent=Physo128110;constitutive=1;rank=2 scaffold_3 . CDS 1297899 1298255 . - 0 ID=Physo128110;Parent=Physo128110;rank=1 scaffold_3 . exon 1297899 1298255 . - . ID=Physo128110.1;Parent=Physo128110;constitutive=1;rank=1 scaffold_3 . repeat_region 1304778 1304836 . ? . description=dust scaffold_3 . repeat_region 1306949 1306965 . ? . description=dust scaffold_3 . repeat_region 1310614 1310621 . ? . description=dust scaffold_3 . repeat_region 1312835 1312842 . ? . description=dust scaffold_3 ensembl protein_coding_gene 1306375 1307494 . - . ID=Physo128112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30321;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1306375 1307494 . - . ID=Physo128112;Parent=Physo128112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1306375 1306666 . - 0 ID=Physo128112;Parent=Physo128112;rank=3 scaffold_3 . exon 1306375 1306666 . - . ID=Physo128112.3;Parent=Physo128112;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 1306790 1306929 . - 0 ID=Physo128112;Parent=Physo128112;rank=2 scaffold_3 . exon 1306790 1306929 . - . ID=Physo128112.2;Parent=Physo128112;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 1307009 1307494 . - 0 ID=Physo128112;Parent=Physo128112;rank=1 scaffold_3 . exon 1307009 1307494 . - . ID=Physo128112.1;Parent=Physo128112;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1309219 1309855 . + . ID=Physo128113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30322;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1309219 1309855 . + . ID=Physo128113;Parent=Physo128113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1309219 1309236 . + 0 ID=Physo128113;Parent=Physo128113;rank=1 scaffold_3 . exon 1309219 1309236 . + . ID=Physo128113.1;Parent=Physo128113;constitutive=1;rank=1 scaffold_3 . CDS 1309317 1309647 . + 0 ID=Physo128113;Parent=Physo128113;rank=2 scaffold_3 . exon 1309317 1309647 . + . ID=Physo128113.2;Parent=Physo128113;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 1309695 1309855 . + 0 ID=Physo128113;Parent=Physo128113;rank=3 scaffold_3 . exon 1309695 1309855 . + . ID=Physo128113.3;Parent=Physo128113;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 ensembl protein_coding_gene 1311525 1312311 . - . ID=Physo128114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30323;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1311525 1312311 . - . ID=Physo128114;Parent=Physo128114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1311525 1312087 . - 0 ID=Physo128114;Parent=Physo128114;rank=2 scaffold_3 . exon 1311525 1312087 . - . ID=Physo128114.2;Parent=Physo128114;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1312113 1312311 . - 0 ID=Physo128114;Parent=Physo128114;rank=1 scaffold_3 . exon 1312113 1312311 . - . ID=Physo128114.1;Parent=Physo128114;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . biological_region 1313701 1313702 0.999 - . logic_name=eponine scaffold_3 . biological_region 1313717 1313723 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1314206 1314238 . ? . description=trf scaffold_3 . biological_region 1315239 1315239 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1316235 1316770 . - . ID=Physo128115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30324;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1316235 1316770 . - . ID=Physo128115;Parent=Physo128115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1316235 1316555 . - 0 ID=Physo128115;Parent=Physo128115;rank=2 scaffold_3 . exon 1316235 1316555 . - . ID=Physo128115.2;Parent=Physo128115;constitutive=1;rank=2 scaffold_3 . CDS 1316633 1316770 . - 0 ID=Physo128115;Parent=Physo128115;rank=1 scaffold_3 . exon 1316633 1316770 . - . ID=Physo128115.1;Parent=Physo128115;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1318207 1321941 . - . ID=Physo128116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30325;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1318207 1321941 . - . ID=Physo128116;Parent=Physo128116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1318207 1318592 . - 0 ID=Physo128116;Parent=Physo128116;rank=5 scaffold_3 . exon 1318207 1318592 . - . ID=Physo128116.5;Parent=Physo128116;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 1318686 1320912 . - 0 ID=Physo128116;Parent=Physo128116;rank=4 scaffold_3 . exon 1318686 1320912 . - . ID=Physo128116.4;Parent=Physo128116;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . CDS 1321057 1321265 . - 0 ID=Physo128116;Parent=Physo128116;rank=3 scaffold_3 . exon 1321057 1321265 . - . ID=Physo128116.3;Parent=Physo128116;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 1321350 1321791 . - 0 ID=Physo128116;Parent=Physo128116;rank=2 scaffold_3 . exon 1321350 1321791 . - . ID=Physo128116.2;Parent=Physo128116;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 1321852 1321941 . - 0 ID=Physo128116;Parent=Physo128116;rank=1 scaffold_3 . exon 1321852 1321941 . - . ID=Physo128116.1;Parent=Physo128116;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1322170 1323714 . + . ID=Physo128117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30326;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1322170 1323714 . + . ID=Physo128117;Parent=Physo128117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1322170 1322619 . + 0 ID=Physo128117;Parent=Physo128117;rank=1 scaffold_3 . exon 1322170 1322619 . + . ID=Physo128117.1;Parent=Physo128117;constitutive=1;rank=1 scaffold_3 . CDS 1323102 1323332 . + 0 ID=Physo128117;Parent=Physo128117;rank=2 scaffold_3 . exon 1323102 1323332 . + . ID=Physo128117.2;Parent=Physo128117;constitutive=1;rank=2 scaffold_3 . CDS 1323370 1323382 . + 0 ID=Physo128117;Parent=Physo128117;rank=3 scaffold_3 . exon 1323370 1323382 . + . ID=Physo128117.3;Parent=Physo128117;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 1323542 1323714 . + 0 ID=Physo128117;Parent=Physo128117;rank=4 scaffold_3 . repeat_region 1324434 1324999 . + . description=Gypsy-1-I_PI-int scaffold_3 . repeat_region 1326256 1326264 . ? . description=dust scaffold_3 . repeat_region 1332409 1332521 . + . description=Sola3-2_PS scaffold_3 ensembl protein_coding_gene 1331701 1333664 . + . ID=Physo108246;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30035;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1331701 1333664 . + . ID=Physo108246;Parent=Physo108246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1331701 1332312 . + 0 ID=Physo108246;Parent=Physo108246;rank=1 scaffold_3 . exon 1331701 1332312 . + . ID=Physo108246.1;Parent=Physo108246;constitutive=1;rank=1 scaffold_3 . CDS 1332376 1332720 . + 0 ID=Physo108246;Parent=Physo108246;rank=2 scaffold_3 . exon 1332376 1332720 . + . ID=Physo108246.2;Parent=Physo108246;constitutive=1;rank=2 scaffold_3 . CDS 1332787 1333017 . + 0 ID=Physo108246;Parent=Physo108246;rank=3 scaffold_3 . exon 1332787 1333017 . + . ID=Physo108246.3;Parent=Physo108246;constitutive=1;rank=3 scaffold_3 . CDS 1333098 1333664 . + 0 ID=Physo108246;Parent=Physo108246;rank=4 scaffold_3 . exon 1333098 1333664 . + . ID=Physo108246.4;Parent=Physo108246;constitutive=1;rank=4 scaffold_3 . exon 1323542 1323714 . + . ID=Physo128117.4;Parent=Physo128117;constitutive=1;ensembl_phase=1;rank=4 scaffold_3 ensembl protein_coding_gene 1324963 1325661 . + . ID=Physo128118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30327;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1324963 1325661 . + . ID=Physo128118;Parent=Physo128118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1324963 1325661 . + 0 ID=Physo128118;Parent=Physo128118;rank=1 scaffold_3 . exon 1324963 1325661 . + . ID=Physo128118.1;Parent=Physo128118;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1326435 1331048 . + . ID=Physo128119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30328;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1326435 1331048 . + . ID=Physo128119;Parent=Physo128119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1326435 1326865 . + 0 ID=Physo128119;Parent=Physo128119;rank=1 scaffold_3 . exon 1326435 1326865 . + . ID=Physo128119.1;Parent=Physo128119;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1326953 1327525 . + 0 ID=Physo128119;Parent=Physo128119;rank=2 scaffold_3 . exon 1326953 1327525 . + . ID=Physo128119.2;Parent=Physo128119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 1327582 1327917 . + 0 ID=Physo128119;Parent=Physo128119;rank=3 scaffold_3 . exon 1327582 1327917 . + . ID=Physo128119.3;Parent=Physo128119;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_3 . CDS 1327959 1328679 . + 0 ID=Physo128119;Parent=Physo128119;rank=4 scaffold_3 . exon 1327959 1328679 . + . ID=Physo128119.4;Parent=Physo128119;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 1328785 1330404 . + 0 ID=Physo128119;Parent=Physo128119;rank=5 scaffold_3 . exon 1328785 1330404 . + . ID=Physo128119.5;Parent=Physo128119;constitutive=1;rank=5 scaffold_3 . CDS 1330629 1331048 . + 0 ID=Physo128119;Parent=Physo128119;rank=6 scaffold_3 . exon 1330629 1331048 . + . ID=Physo128119.6;Parent=Physo128119;constitutive=1;rank=6 scaffold_3 . biological_region 1333529 1333530 0.999 - . logic_name=eponine scaffold_3 . biological_region 1334764 1334765 0.999 - . logic_name=eponine scaffold_3 . biological_region 1334804 1334805 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1335785 1335809 . ? . description=trf scaffold_3 . biological_region 1337621 1337626 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1338016 1338056 . ? . description=trf scaffold_3 . repeat_region 1338535 1338588 . ? . description=trf scaffold_3 . repeat_region 1339150 1339192 . ? . description=trf scaffold_3 . repeat_region 1339663 1339698 . ? . description=trf scaffold_3 . repeat_region 1339668 1339708 . ? . description=trf scaffold_3 . biological_region 1340412 1340416 0.999 - . logic_name=eponine scaffold_3 . biological_region 1340721 1340728 0.999 + . logic_name=eponine scaffold_3 . biological_region 1340757 1340761 0.999 - . logic_name=eponine scaffold_3 . biological_region 1340944 1340950 0.999 + . logic_name=eponine scaffold_3 . biological_region 1341072 1341079 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1334729 1335325 . + . ID=Physo128121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30330;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1334729 1335325 . + . ID=Physo128121;Parent=Physo128121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1334729 1335325 . + 0 ID=Physo128121;Parent=Physo128121;rank=1 scaffold_3 . exon 1334729 1335325 . + . ID=Physo128121.1;Parent=Physo128121;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1337790 1338092 . - . ID=Physo128122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30331;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1337790 1338092 . - . ID=Physo128122;Parent=Physo128122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1337790 1338092 . - 0 ID=Physo128122;Parent=Physo128122;rank=1 scaffold_3 . exon 1337790 1338092 . - . ID=Physo128122.1;Parent=Physo128122;constitutive=1;rank=1 scaffold_3 . repeat_region 1347597 1347660 . ? . description=dust scaffold_3 . repeat_region 1347597 1347764 . + . description=(CAG)n scaffold_3 ensembl protein_coding_gene 1346027 1348683 . + . ID=Physo128123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30332;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1346027 1348683 . + . ID=Physo128123;Parent=Physo128123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1346027 1346035 . + 0 ID=Physo128123;Parent=Physo128123;rank=1 scaffold_3 . exon 1346027 1346035 . + . ID=Physo128123.1;Parent=Physo128123;constitutive=1;rank=1 scaffold_3 . CDS 1346143 1346243 . + 0 ID=Physo128123;Parent=Physo128123;rank=2 scaffold_3 . exon 1346143 1346243 . + . ID=Physo128123.2;Parent=Physo128123;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 1346339 1348361 . + 0 ID=Physo128123;Parent=Physo128123;rank=3 scaffold_3 . exon 1346339 1348361 . + . ID=Physo128123.3;Parent=Physo128123;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 1348452 1348679 . + 0 ID=Physo128123;Parent=Physo128123;rank=4 scaffold_3 . exon 1348452 1348683 . + . ID=Physo128123.4;Parent=Physo128123;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_3 ensembl protein_coding_gene 1348967 1349425 . - . ID=Physo128124;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30333;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1348967 1349425 . - . ID=Physo128124;Parent=Physo128124;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1348967 1349425 . - 0 ID=Physo128124;Parent=Physo128124;rank=1 scaffold_3 . exon 1348967 1349425 . - . ID=Physo128124.1;Parent=Physo128124;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1349640 1350274 . + . ID=Physo128125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30334;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1349640 1350274 . + . ID=Physo128125;Parent=Physo128125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1349640 1349770 . + 0 ID=Physo128125;Parent=Physo128125;rank=1 scaffold_3 . exon 1349640 1349770 . + . ID=Physo128125.1;Parent=Physo128125;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1349856 1350236 . + 0 ID=Physo128125;Parent=Physo128125;rank=2 scaffold_3 . exon 1349856 1350236 . + . ID=Physo128125.2;Parent=Physo128125;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . CDS 1350259 1350274 . + 0 ID=Physo128125;Parent=Physo128125;rank=3 scaffold_3 . exon 1350259 1350274 . + . ID=Physo128125.3;Parent=Physo128125;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 ensembl protein_coding_gene 1350505 1352210 . - . ID=Physo128126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30335;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1350505 1352210 . - . ID=Physo128126;Parent=Physo128126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1350505 1350616 . - 0 ID=Physo128126;Parent=Physo128126;rank=7 scaffold_3 . exon 1350505 1350616 . - . ID=Physo128126.7;Parent=Physo128126;constitutive=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 1350714 1350784 . - 0 ID=Physo128126;Parent=Physo128126;rank=6 scaffold_3 . exon 1350714 1350784 . - . ID=Physo128126.6;Parent=Physo128126;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_3 . CDS 1350863 1350939 . - 0 ID=Physo128126;Parent=Physo128126;rank=5 scaffold_3 . exon 1350863 1350939 . - . ID=Physo128126.5;Parent=Physo128126;constitutive=1;ensembl_phase=1;rank=5 scaffold_3 . CDS 1351007 1351547 . - 0 ID=Physo128126;Parent=Physo128126;rank=4 scaffold_3 . exon 1351007 1351547 . - . ID=Physo128126.4;Parent=Physo128126;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_3 . CDS 1351625 1351688 . - 0 ID=Physo128126;Parent=Physo128126;rank=3 scaffold_3 . exon 1351625 1351688 . - . ID=Physo128126.3;Parent=Physo128126;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 1351811 1351899 . - 0 ID=Physo128126;Parent=Physo128126;rank=2 scaffold_3 . exon 1351811 1351899 . - . ID=Physo128126.2;Parent=Physo128126;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . CDS 1352070 1352210 . - 0 ID=Physo128126;Parent=Physo128126;rank=1 scaffold_3 . exon 1352070 1352210 . - . ID=Physo128126.1;Parent=Physo128126;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1352597 1354291 . - . ID=Physo128127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30336;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1352597 1354291 . - . ID=Physo128127;Parent=Physo128127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1352597 1354291 . - . ID=Physo128127.1;Parent=Physo128127;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 . CDS 1352723 1354291 . - 0 ID=Physo128127;Parent=Physo128127;rank=1 scaffold_3 . repeat_region 1353384 1353430 . ? . description=trf scaffold_3 . repeat_region 1353393 1353443 . ? . description=trf scaffold_3 . repeat_region 1353632 1353705 . ? . description=trf scaffold_3 . repeat_region 1353661 1353707 . ? . description=trf scaffold_3 . biological_region 1353843 1353846 0.999 + . logic_name=eponine scaffold_3 . biological_region 1353866 1353868 0.999 - . logic_name=eponine scaffold_3 . biological_region 1353921 1353921 0.999 - . logic_name=eponine scaffold_3 . biological_region 1354221 1354227 0.999 - . logic_name=eponine scaffold_3 . biological_region 1354224 1354226 0.999 + . logic_name=eponine scaffold_3 . biological_region 1354867 1354868 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1357422 1357441 . ? . description=trf scaffold_3 . biological_region 1358425 1358430 0.999 + . logic_name=eponine scaffold_3 . biological_region 1358572 1358580 0.999 + . logic_name=eponine scaffold_3 . biological_region 1359034 1359038 0.999 - . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1356441 1357061 . - . ID=Physo128128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30337;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1356441 1357061 . - . ID=Physo128128;Parent=Physo128128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1356441 1357061 . - 0 ID=Physo128128;Parent=Physo128128;rank=1 scaffold_3 . exon 1356441 1357061 . - . ID=Physo128128.1;Parent=Physo128128;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1358375 1361842 . + . ID=Physo128129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30338;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1358375 1361842 . + . ID=Physo128129;Parent=Physo128129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1358375 1361797 . + 0 ID=Physo128129;Parent=Physo128129;rank=1 scaffold_3 . exon 1358375 1361842 . + . ID=Physo128129.1;Parent=Physo128129;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 1362566 1364703 . + . ID=Physo128130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30339;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1362566 1364703 . + . ID=Physo128130;Parent=Physo128130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1362566 1363399 . + 0 ID=Physo128130;Parent=Physo128130;rank=1 scaffold_3 . exon 1362566 1363399 . + . ID=Physo128130.1;Parent=Physo128130;constitutive=1;rank=1 scaffold_3 . CDS 1363432 1364703 . + 0 ID=Physo128130;Parent=Physo128130;rank=2 scaffold_3 . repeat_region 1365644 1365653 . ? . description=dust scaffold_3 . repeat_region 1366047 1366055 . ? . description=dust scaffold_3 . repeat_region 1368975 1369278 . - . description=GypsyPi-1c_LTR scaffold_3 . repeat_region 1369279 1369527 . - . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 1370146 1374712 . - . description=GypsyPi-1c_I-int scaffold_3 . exon 1363432 1364703 . + . ID=Physo128130.2;Parent=Physo128130;constitutive=1;rank=2 scaffold_3 ensembl protein_coding_gene 1369465 1371431 . + . ID=Physo128131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30340;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1369465 1371431 . + . ID=Physo128131;Parent=Physo128131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1369465 1369690 . + 0 ID=Physo128131;Parent=Physo128131;rank=1 scaffold_3 . exon 1369465 1369690 . + . ID=Physo128131.1;Parent=Physo128131;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1369766 1369983 . + 0 ID=Physo128131;Parent=Physo128131;rank=2 scaffold_3 . exon 1369766 1369983 . + . ID=Physo128131.2;Parent=Physo128131;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1370173 1370387 . + 0 ID=Physo128131;Parent=Physo128131;rank=3 scaffold_3 . exon 1370173 1370387 . + . ID=Physo128131.3;Parent=Physo128131;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 1370460 1370466 . + 0 ID=Physo128131;Parent=Physo128131;rank=4 scaffold_3 . exon 1370460 1370466 . + . ID=Physo128131.4;Parent=Physo128131;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 1370492 1370722 . + 0 ID=Physo128131;Parent=Physo128131;rank=5 scaffold_3 . exon 1370492 1370722 . + . ID=Physo128131.5;Parent=Physo128131;constitutive=1;rank=5 scaffold_3 . CDS 1370745 1371431 . + 0 ID=Physo128131;Parent=Physo128131;rank=6 scaffold_3 . exon 1370745 1371431 . + . ID=Physo128131.6;Parent=Physo128131;constitutive=1;rank=6 scaffold_3 ensembl protein_coding_gene 1371934 1374598 . - . ID=Physo128132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30341;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1371934 1374598 . - . ID=Physo128132;Parent=Physo128132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1371934 1371942 . - 0 ID=Physo128132;Parent=Physo128132;rank=6 scaffold_3 . exon 1371934 1371942 . - . ID=Physo128132.6;Parent=Physo128132;constitutive=1;rank=6 scaffold_3 . CDS 1371989 1373072 . - 0 ID=Physo128132;Parent=Physo128132;rank=5 scaffold_3 . exon 1371989 1373072 . - . ID=Physo128132.5;Parent=Physo128132;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 1373239 1373525 . - 0 ID=Physo128132;Parent=Physo128132;rank=4 scaffold_3 . CDS 1373639 1373822 . - 0 ID=Physo128132;Parent=Physo128132;rank=3 scaffold_3 . CDS 1373904 1374041 . - 0 ID=Physo128132;Parent=Physo128132;rank=2 scaffold_3 . CDS 1374078 1374598 . - 0 ID=Physo128132;Parent=Physo128132;rank=1 scaffold_3 . repeat_region 1374872 1374977 . ? . description=trf scaffold_3 . repeat_region 1374958 1375126 . ? . description=trf scaffold_3 . repeat_region 1375129 1375158 . ? . description=trf scaffold_3 . biological_region 1377407 1377409 0.999 - . logic_name=eponine scaffold_3 . biological_region 1377665 1377668 0.999 - . logic_name=eponine scaffold_3 . biological_region 1379654 1379655 0.999 + . logic_name=eponine scaffold_3 . biological_region 1380178 1380181 0.999 + . logic_name=eponine scaffold_3 . biological_region 1380502 1380506 0.999 - . logic_name=eponine scaffold_3 . biological_region 1380522 1380524 0.999 - . logic_name=eponine scaffold_3 . biological_region 1380840 1380840 0.999 + . logic_name=eponine scaffold_3 . biological_region 1380862 1380866 0.999 + . logic_name=eponine scaffold_3 . biological_region 1380962 1380964 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1381049 1381071 . ? . description=trf scaffold_3 . repeat_region 1381975 1382006 . ? . description=trf scaffold_3 . biological_region 1382256 1382257 0.999 - . logic_name=eponine scaffold_3 . exon 1373239 1373525 . - . ID=Physo128132.4;Parent=Physo128132;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_3 . exon 1373639 1373822 . - . ID=Physo128132.3;Parent=Physo128132;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . exon 1373904 1374041 . - . ID=Physo128132.2;Parent=Physo128132;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_3 . exon 1374078 1374598 . - . ID=Physo128132.1;Parent=Physo128132;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 ensembl protein_coding_gene 1380640 1381266 . + . ID=Physo128133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30342;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1380640 1381266 . + . ID=Physo128133;Parent=Physo128133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1380640 1381266 . + 0 ID=Physo128133;Parent=Physo128133;rank=1 scaffold_3 . exon 1380640 1381266 . + . ID=Physo128133.1;Parent=Physo128133;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1382058 1385053 . + . ID=Physo128134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30343;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1382058 1385053 . + . ID=Physo128134;Parent=Physo128134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1382058 1382259 . + 0 ID=Physo128134;Parent=Physo128134;rank=1 scaffold_3 . exon 1382058 1382259 . + . ID=Physo128134.1;Parent=Physo128134;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1382333 1382456 . + 0 ID=Physo128134;Parent=Physo128134;rank=2 scaffold_3 . exon 1382333 1382456 . + . ID=Physo128134.2;Parent=Physo128134;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_3 . CDS 1382537 1384481 . + 0 ID=Physo128134;Parent=Physo128134;rank=3 scaffold_3 . exon 1382537 1384481 . + . ID=Physo128134.3;Parent=Physo128134;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . CDS 1384569 1384691 . + 0 ID=Physo128134;Parent=Physo128134;rank=4 scaffold_3 . CDS 1384758 1384970 . + 0 ID=Physo128134;Parent=Physo128134;rank=5 scaffold_3 . repeat_region 1391647 1391740 . ? . description=dust scaffold_3 ensembl protein_coding_gene 1391432 1392910 . + . ID=Physo108247;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30036;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1391432 1392910 . + . ID=Physo108247;Parent=Physo108247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1391432 1391644 . + 0 ID=Physo108247;Parent=Physo108247;rank=1 scaffold_3 . exon 1391432 1391644 . + . ID=Physo108247.1;Parent=Physo108247;constitutive=1;rank=1 scaffold_3 . CDS 1391717 1392910 . + 0 ID=Physo108247;Parent=Physo108247;rank=2 scaffold_3 . exon 1391717 1392910 . + . ID=Physo108247.2;Parent=Physo108247;constitutive=1;rank=2 scaffold_3 . exon 1384569 1384691 . + . ID=Physo128134.4;Parent=Physo128134;constitutive=1;rank=4 scaffold_3 . exon 1384758 1385053 . + . ID=Physo128134.5;Parent=Physo128134;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_3 ensembl protein_coding_gene 1385490 1386392 . - . ID=Physo128135;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30344;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1385490 1386392 . - . ID=Physo128135;Parent=Physo128135;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1385490 1386392 . - 0 ID=Physo128135;Parent=Physo128135;rank=1 scaffold_3 . exon 1385490 1386392 . - . ID=Physo128135.1;Parent=Physo128135;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1388598 1391275 . - . ID=Physo128138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30347;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1388598 1391275 . - . ID=Physo128138;Parent=Physo128138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1388598 1390698 . - . ID=Physo128138.2;Parent=Physo128138;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1388696 1390698 . - 0 ID=Physo128138;Parent=Physo128138;rank=2 scaffold_3 . CDS 1390786 1391275 . - 0 ID=Physo128138;Parent=Physo128138;rank=1 scaffold_3 . exon 1390786 1391275 . - . ID=Physo128138.1;Parent=Physo128138;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 1386775 1387206 . - . ID=Physo155427;biotype=protein_coding;external_name=C_scaffold_3000097;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1386775 1387206 . - . ID=Physo155427;Parent=Physo155427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1386775 1386990 . - 0 ID=Physo155427;Parent=Physo155427;rank=2 scaffold_3 . exon 1386775 1386990 . - . ID=Physo155427.2;Parent=Physo155427;constitutive=1;rank=2 scaffold_3 . CDS 1387066 1387206 . - 0 ID=Physo155427;Parent=Physo155427;rank=1 scaffold_3 . exon 1387066 1387206 . - . ID=Physo155427.1;Parent=Physo155427;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1387707 1388463 . + . ID=Physo155428;biotype=protein_coding;external_name=C_scaffold_3000098;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1387707 1388463 . + . ID=Physo155428;Parent=Physo155428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1387707 1388004 . + 0 ID=Physo155428;Parent=Physo155428;rank=1 scaffold_3 . exon 1387707 1388004 . + . ID=Physo155428.1;Parent=Physo155428;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1388083 1388238 . + 0 ID=Physo155428;Parent=Physo155428;rank=2 scaffold_3 . exon 1388083 1388238 . + . ID=Physo155428.2;Parent=Physo155428;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1388306 1388463 . + 0 ID=Physo155428;Parent=Physo155428;rank=3 scaffold_3 . exon 1388306 1388463 . + . ID=Physo155428.3;Parent=Physo155428;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . biological_region 1395461 1395466 0.999 + . logic_name=eponine scaffold_3 . biological_region 1395521 1395525 0.999 + . logic_name=eponine scaffold_3 . biological_region 1395558 1395566 0.999 + . logic_name=eponine scaffold_3 . biological_region 1395594 1395604 0.999 - . logic_name=eponine scaffold_3 . biological_region 1395625 1395630 0.999 - . logic_name=eponine scaffold_3 . biological_region 1395650 1395657 0.999 + . logic_name=eponine scaffold_3 . biological_region 1395657 1395660 0.999 - . logic_name=eponine scaffold_3 . biological_region 1395706 1395707 0.999 - . logic_name=eponine scaffold_3 . biological_region 1396639 1396642 0.999 + . logic_name=eponine scaffold_3 . biological_region 1398717 1398719 0.999 - . logic_name=eponine scaffold_3 . biological_region 1401107 1401113 0.999 + . logic_name=eponine scaffold_3 . biological_region 1401154 1401159 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1401601 1401620 . ? . description=trf scaffold_3 . biological_region 1401761 1401766 0.999 - . logic_name=eponine scaffold_3 . biological_region 1402017 1402018 0.999 - . logic_name=eponine scaffold_3 . biological_region 1402811 1402814 0.999 + . logic_name=eponine scaffold_3 . biological_region 1402920 1402924 0.999 + . logic_name=eponine scaffold_3 . biological_region 1402938 1402938 0.999 - . logic_name=eponine scaffold_3 . biological_region 1402943 1402948 0.999 - . logic_name=eponine scaffold_3 . biological_region 1403000 1403008 0.999 - . logic_name=eponine scaffold_3 . biological_region 1403019 1403032 0.999 - . logic_name=eponine scaffold_3 . biological_region 1403020 1403029 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1393199 1395696 . - . ID=Physo128140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30349;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1393199 1395696 . - . ID=Physo128140;Parent=Physo128140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1393199 1393693 . - 0 ID=Physo128140;Parent=Physo128140;rank=4 scaffold_3 . exon 1393199 1393693 . - . ID=Physo128140.4;Parent=Physo128140;constitutive=1;rank=4 scaffold_3 . CDS 1393809 1394252 . - 0 ID=Physo128140;Parent=Physo128140;rank=3 scaffold_3 . exon 1393809 1394252 . - . ID=Physo128140.3;Parent=Physo128140;constitutive=1;rank=3 scaffold_3 . CDS 1394324 1395070 . - 0 ID=Physo128140;Parent=Physo128140;rank=2 scaffold_3 . exon 1394324 1395070 . - . ID=Physo128140.2;Parent=Physo128140;constitutive=1;rank=2 scaffold_3 . CDS 1395183 1395662 . - 0 ID=Physo128140;Parent=Physo128140;rank=1 scaffold_3 . exon 1395183 1395696 . - . ID=Physo128140.1;Parent=Physo128140;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 1400540 1401277 . - . ID=Physo128143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30352;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1400540 1401277 . - . ID=Physo128143;Parent=Physo128143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1400540 1401277 . - 0 ID=Physo128143;Parent=Physo128143;rank=1 scaffold_3 . exon 1400540 1401277 . - . ID=Physo128143.1;Parent=Physo128143;constitutive=1;rank=1 scaffold_3 ensembl protein_coding_gene 1402788 1406356 . + . ID=Physo128144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30353;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1402788 1406356 . + . ID=Physo128144;Parent=Physo128144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1402788 1405235 . + 0 ID=Physo128144;Parent=Physo128144;rank=1 scaffold_3 . exon 1402788 1405235 . + . ID=Physo128144.1;Parent=Physo128144;constitutive=1;rank=1 scaffold_3 . CDS 1405404 1405780 . + 0 ID=Physo128144;Parent=Physo128144;rank=2 scaffold_3 . CDS 1405855 1406002 . + 0 ID=Physo128144;Parent=Physo128144;rank=3 scaffold_3 . CDS 1406081 1406356 . + 0 ID=Physo128144;Parent=Physo128144;rank=4 scaffold_3 ensembl protein_coding_gene 1396435 1400343 . + . ID=Physo155429;biotype=protein_coding;external_name=C_scaffold_3000099;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1396435 1400343 . + . ID=Physo155429;Parent=Physo155429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1396435 1396788 . + 0 ID=Physo155429;Parent=Physo155429;rank=1 scaffold_3 . exon 1396435 1396788 . + . ID=Physo155429.1;Parent=Physo155429;constitutive=1;rank=1 scaffold_3 . CDS 1396919 1397260 . + 0 ID=Physo155429;Parent=Physo155429;rank=2 scaffold_3 . exon 1396919 1397260 . + . ID=Physo155429.2;Parent=Physo155429;constitutive=1;rank=2 scaffold_3 . CDS 1397614 1398869 . + 0 ID=Physo155429;Parent=Physo155429;rank=3 scaffold_3 . exon 1397614 1398869 . + . ID=Physo155429.3;Parent=Physo155429;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 1398930 1400343 . + 0 ID=Physo155429;Parent=Physo155429;rank=4 scaffold_3 . exon 1398930 1400343 . + . ID=Physo155429.4;Parent=Physo155429;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 ensembl protein_coding_gene 1407614 1408880 . + . ID=Physo108249;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_30038;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1407614 1408880 . + . ID=Physo108249;Parent=Physo108249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1407614 1407763 . + 0 ID=Physo108249;Parent=Physo108249;rank=1 scaffold_3 . exon 1407614 1407763 . + . ID=Physo108249.1;Parent=Physo108249;constitutive=1;rank=1 scaffold_3 . CDS 1407854 1408397 . + 0 ID=Physo108249;Parent=Physo108249;rank=2 scaffold_3 . exon 1407854 1408397 . + . ID=Physo108249.2;Parent=Physo108249;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_3 . CDS 1408476 1408696 . + 0 ID=Physo108249;Parent=Physo108249;rank=3 scaffold_3 . exon 1408476 1408880 . + . ID=Physo108249.3;Parent=Physo108249;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_3 . exon 1405404 1405780 . + . ID=Physo128144.2;Parent=Physo128144;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_3 . exon 1405855 1406002 . + . ID=Physo128144.3;Parent=Physo128144;constitutive=1;ensembl_phase=2;rank=3 scaffold_3 . exon 1406081 1406356 . + . ID=Physo128144.4;Parent=Physo128144;constitutive=1;rank=4 scaffold_3 ensembl protein_coding_gene 1408918 1411917 . - . ID=Physo128146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30355;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1408918 1411917 . - . ID=Physo128146;Parent=Physo128146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . exon 1408918 1410367 . - . ID=Physo128146.5;Parent=Physo128146;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_3 . CDS 1408967 1410367 . - 0 ID=Physo128146;Parent=Physo128146;rank=5 scaffold_3 . CDS 1410450 1410482 . - 0 ID=Physo128146;Parent=Physo128146;rank=4 scaffold_3 . exon 1410450 1410482 . - . ID=Physo128146.4;Parent=Physo128146;constitutive=1;rank=4 scaffold_3 . CDS 1410729 1411069 . - 0 ID=Physo128146;Parent=Physo128146;rank=3 scaffold_3 . exon 1410729 1411069 . - . ID=Physo128146.3;Parent=Physo128146;constitutive=1;ensembl_phase=1;rank=3 scaffold_3 . CDS 1411183 1411638 . - 0 ID=Physo128146;Parent=Physo128146;rank=2 scaffold_3 . exon 1411183 1411638 . - . ID=Physo128146.2;Parent=Physo128146;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1411707 1411917 . - 0 ID=Physo128146;Parent=Physo128146;rank=1 scaffold_3 . exon 1411707 1411917 . - . ID=Physo128146.1;Parent=Physo128146;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 ensembl protein_coding_gene 1412128 1414529 . + . ID=Physo128147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30356;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1412128 1414529 . + . ID=Physo128147;Parent=Physo128147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1412128 1412162 . + 0 ID=Physo128147;Parent=Physo128147;rank=1 scaffold_3 . exon 1412128 1412162 . + . ID=Physo128147.1;Parent=Physo128147;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1412298 1413004 . + 0 ID=Physo128147;Parent=Physo128147;rank=2 scaffold_3 . exon 1412298 1413004 . + . ID=Physo128147.2;Parent=Physo128147;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1413086 1413326 . + 0 ID=Physo128147;Parent=Physo128147;rank=3 scaffold_3 . CDS 1413673 1413777 . + 0 ID=Physo128147;Parent=Physo128147;rank=4 scaffold_3 . CDS 1413869 1413969 . + 0 ID=Physo128147;Parent=Physo128147;rank=5 scaffold_3 . CDS 1414067 1414152 . + 0 ID=Physo128147;Parent=Physo128147;rank=6 scaffold_3 . CDS 1414226 1414282 . + 0 ID=Physo128147;Parent=Physo128147;rank=7 scaffold_3 . CDS 1414347 1414421 . + 0 ID=Physo128147;Parent=Physo128147;rank=8 scaffold_3 . repeat_region 1414570 1414583 . ? . description=dust scaffold_3 . biological_region 1415382 1415383 0.999 + . logic_name=eponine scaffold_3 . repeat_region 1415993 1416011 . ? . description=dust scaffold_3 . repeat_region 1416444 1416458 . ? . description=dust scaffold_3 . biological_region 1416742 1416743 0.999 - . logic_name=eponine scaffold_3 . biological_region 1416764 1416765 0.999 - . logic_name=eponine scaffold_3 . biological_region 1418029 1418033 0.999 + . logic_name=eponine scaffold_3 . biological_region 1418099 1418100 0.999 - . logic_name=eponine scaffold_3 . biological_region 1418396 1418400 0.999 + . logic_name=eponine scaffold_3 . biological_region 1418496 1418501 0.999 + . logic_name=eponine scaffold_3 . biological_region 1418527 1418529 0.999 - . logic_name=eponine scaffold_3 . biological_region 1418707 1418711 0.999 + . logic_name=eponine scaffold_3 . biological_region 1419453 1419457 0.999 + . logic_name=eponine scaffold_3 . biological_region 1421468 1421471 0.999 - . logic_name=eponine scaffold_3 . biological_region 1421524 1421527 0.999 + . logic_name=eponine scaffold_3 . biological_region 1421935 1421936 0.999 - . logic_name=eponine scaffold_3 . biological_region 1421998 1422002 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1422991 1423173 . + . description=GypsyPi-1c_LTR scaffold_3 . exon 1413086 1413326 . + . ID=Physo128147.3;Parent=Physo128147;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_3 . exon 1413673 1413777 . + . ID=Physo128147.4;Parent=Physo128147;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_3 . exon 1413869 1413969 . + . ID=Physo128147.5;Parent=Physo128147;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_3 . exon 1414067 1414152 . + . ID=Physo128147.6;Parent=Physo128147;constitutive=1;ensembl_phase=1;rank=6 scaffold_3 . exon 1414226 1414282 . + . ID=Physo128147.7;Parent=Physo128147;constitutive=1;rank=7 scaffold_3 . exon 1414347 1414529 . + . ID=Physo128147.8;Parent=Physo128147;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_3 ensembl protein_coding_gene 1414630 1416509 . - . ID=Physo128148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30357;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1414630 1416509 . - . ID=Physo128148;Parent=Physo128148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1414630 1414722 . - 0 ID=Physo128148;Parent=Physo128148;rank=5 scaffold_3 . exon 1414630 1414722 . - . ID=Physo128148.5;Parent=Physo128148;constitutive=1;rank=5 scaffold_3 . CDS 1414806 1415741 . - 0 ID=Physo128148;Parent=Physo128148;rank=4 scaffold_3 . exon 1414806 1415741 . - . ID=Physo128148.4;Parent=Physo128148;constitutive=1;rank=4 scaffold_3 . CDS 1415813 1415974 . - 0 ID=Physo128148;Parent=Physo128148;rank=3 scaffold_3 . exon 1415813 1415974 . - . ID=Physo128148.3;Parent=Physo128148;constitutive=1;rank=3 scaffold_3 . CDS 1416098 1416223 . - 0 ID=Physo128148;Parent=Physo128148;rank=2 scaffold_3 . exon 1416098 1416223 . - . ID=Physo128148.2;Parent=Physo128148;constitutive=1;rank=2 scaffold_3 . CDS 1416391 1416435 . - 0 ID=Physo128148;Parent=Physo128148;rank=1 scaffold_3 . exon 1416391 1416509 . - . ID=Physo128148.1;Parent=Physo128148;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 1416627 1418243 . + . ID=Physo128149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30358;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1416627 1418243 . + . ID=Physo128149;Parent=Physo128149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1416627 1416840 . + 0 ID=Physo128149;Parent=Physo128149;rank=1 scaffold_3 . exon 1416627 1416840 . + . ID=Physo128149.1;Parent=Physo128149;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1416914 1416996 . + 0 ID=Physo128149;Parent=Physo128149;rank=2 scaffold_3 . exon 1416914 1416996 . + . ID=Physo128149.2;Parent=Physo128149;constitutive=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1417085 1417234 . + 0 ID=Physo128149;Parent=Physo128149;rank=3 scaffold_3 . exon 1417085 1417234 . + . ID=Physo128149.3;Parent=Physo128149;constitutive=1;rank=3 scaffold_3 . CDS 1417335 1417370 . + 0 ID=Physo128149;Parent=Physo128149;rank=4 scaffold_3 . exon 1417335 1417370 . + . ID=Physo128149.4;Parent=Physo128149;constitutive=1;rank=4 scaffold_3 . CDS 1417457 1417720 . + 0 ID=Physo128149;Parent=Physo128149;rank=5 scaffold_3 . exon 1417457 1417720 . + . ID=Physo128149.5;Parent=Physo128149;constitutive=1;rank=5 scaffold_3 . CDS 1417794 1417892 . + 0 ID=Physo128149;Parent=Physo128149;rank=6 scaffold_3 . exon 1417794 1417892 . + . ID=Physo128149.6;Parent=Physo128149;constitutive=1;rank=6 scaffold_3 . CDS 1417978 1418205 . + 0 ID=Physo128149;Parent=Physo128149;rank=7 scaffold_3 . exon 1417978 1418243 . + . ID=Physo128149.7;Parent=Physo128149;constitutive=1;ensembl_end_phase=-1;rank=7 scaffold_3 ensembl protein_coding_gene 1419146 1422051 . + . ID=Physo155432;biotype=protein_coding;external_name=C_scaffold_3000102;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1419146 1422051 . + . ID=Physo155432;Parent=Physo155432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1419146 1419441 . + 0 ID=Physo155432;Parent=Physo155432;rank=1 scaffold_3 . exon 1419146 1419441 . + . ID=Physo155432.1;Parent=Physo155432;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . CDS 1419511 1419994 . + 0 ID=Physo155432;Parent=Physo155432;rank=2 scaffold_3 . exon 1419511 1419994 . + . ID=Physo155432.2;Parent=Physo155432;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1420279 1421621 . + 0 ID=Physo155432;Parent=Physo155432;rank=3 scaffold_3 . exon 1420279 1421621 . + . ID=Physo155432.3;Parent=Physo155432;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 1421697 1422051 . + 0 ID=Physo155432;Parent=Physo155432;rank=4 scaffold_3 . exon 1421697 1422051 . + . ID=Physo155432.4;Parent=Physo155432;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . repeat_region 1423174 1429783 . + . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 1424876 1425041 . ? . description=trf scaffold_3 . repeat_region 1425022 1425125 . ? . description=trf scaffold_3 . repeat_region 1430355 1430674 . + . description=GypsyPi-1c_I-int scaffold_3 ensembl protein_coding_gene 1423261 1428087 . + . ID=Physo128151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30360;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1423261 1428087 . + . ID=Physo128151;Parent=Physo128151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1423261 1423470 . + 0 ID=Physo128151;Parent=Physo128151;rank=1 scaffold_3 . exon 1423261 1423470 . + . ID=Physo128151.1;Parent=Physo128151;constitutive=1;rank=1 scaffold_3 . CDS 1423552 1423815 . + 0 ID=Physo128151;Parent=Physo128151;rank=2 scaffold_3 . exon 1423552 1423815 . + . ID=Physo128151.2;Parent=Physo128151;constitutive=1;rank=2 scaffold_3 . CDS 1423840 1424152 . + 0 ID=Physo128151;Parent=Physo128151;rank=3 scaffold_3 . exon 1423840 1424152 . + . ID=Physo128151.3;Parent=Physo128151;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_3 . CDS 1424211 1425180 . + 0 ID=Physo128151;Parent=Physo128151;rank=4 scaffold_3 . exon 1424211 1425180 . + . ID=Physo128151.4;Parent=Physo128151;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_3 . CDS 1425224 1426337 . + 0 ID=Physo128151;Parent=Physo128151;rank=5 scaffold_3 . exon 1425224 1426337 . + . ID=Physo128151.5;Parent=Physo128151;constitutive=1;ensembl_phase=2;rank=5 scaffold_3 . CDS 1426436 1427106 . + 0 ID=Physo128151;Parent=Physo128151;rank=6 scaffold_3 . exon 1426436 1427106 . + . ID=Physo128151.6;Parent=Physo128151;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_3 . CDS 1427134 1427576 . + 0 ID=Physo128151;Parent=Physo128151;rank=7 scaffold_3 . exon 1427134 1427576 . + . ID=Physo128151.7;Parent=Physo128151;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_3 . CDS 1427636 1428087 . + 0 ID=Physo128151;Parent=Physo128151;rank=8 scaffold_3 . exon 1427636 1428087 . + . ID=Physo128151.8;Parent=Physo128151;constitutive=1;ensembl_phase=1;rank=8 scaffold_3 ensembl protein_coding_gene 1428283 1430488 . - . ID=Physo128152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30361;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1428283 1430488 . - . ID=Physo128152;Parent=Physo128152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1428283 1428883 . - 0 ID=Physo128152;Parent=Physo128152;rank=4 scaffold_3 . exon 1428283 1428883 . - . ID=Physo128152.4;Parent=Physo128152;constitutive=1;ensembl_phase=2;rank=4 scaffold_3 . CDS 1429155 1429438 . - 0 ID=Physo128152;Parent=Physo128152;rank=3 scaffold_3 . exon 1429155 1429438 . - . ID=Physo128152.3;Parent=Physo128152;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_3 . CDS 1429464 1429470 . - 0 ID=Physo128152;Parent=Physo128152;rank=2 scaffold_3 . exon 1429464 1429470 . - . ID=Physo128152.2;Parent=Physo128152;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1429542 1430488 . - 0 ID=Physo128152;Parent=Physo128152;rank=1 scaffold_3 . exon 1429542 1430488 . - . ID=Physo128152.1;Parent=Physo128152;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . repeat_region 1434419 1434426 . ? . description=dust scaffold_3 . biological_region 1436595 1436599 0.999 + . logic_name=eponine scaffold_3 . biological_region 1437912 1437916 0.999 + . logic_name=eponine scaffold_3 ensembl protein_coding_gene 1437877 1439232 . - . ID=Physo110748;biotype=protein_coding;external_name=estExt_Genewise1.C_30278;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1437877 1439232 . - . ID=Physo110748;Parent=Physo110748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1437877 1439214 . - 0 ID=Physo110748;Parent=Physo110748;rank=1 scaffold_3 . exon 1437877 1439232 . - . ID=Physo110748.1;Parent=Physo110748;constitutive=1;ensembl_phase=-1;rank=1 scaffold_3 ensembl protein_coding_gene 1434517 1436265 . + . ID=Physo128153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30362;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1434517 1436265 . + . ID=Physo128153;Parent=Physo128153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1434517 1434556 . + 0 ID=Physo128153;Parent=Physo128153;rank=1 scaffold_3 . exon 1434517 1434556 . + . ID=Physo128153.1;Parent=Physo128153;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_3 . CDS 1434636 1434887 . + 0 ID=Physo128153;Parent=Physo128153;rank=2 scaffold_3 . exon 1434636 1434887 . + . ID=Physo128153.2;Parent=Physo128153;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_3 . CDS 1434966 1436173 . + 0 ID=Physo128153;Parent=Physo128153;rank=3 scaffold_3 . exon 1434966 1436265 . + . ID=Physo128153.3;Parent=Physo128153;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_3 . repeat_region 1448954 1449008 . ? . description=trf scaffold_3 . repeat_region 1451945 1452094 . + . description=(CGAGT)n scaffold_3 . repeat_region 1451958 1452073 . ? . description=trf scaffold_3 ensembl protein_coding_gene 1445822 1447451 . - . ID=Physo128155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30364;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1445822 1447451 . - . ID=Physo128155;Parent=Physo128155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1445822 1445920 . - 0 ID=Physo128155;Parent=Physo128155;rank=3 scaffold_3 . exon 1445822 1445920 . - . ID=Physo128155.3;Parent=Physo128155;constitutive=1;rank=3 scaffold_3 . CDS 1446002 1446524 . - 0 ID=Physo128155;Parent=Physo128155;rank=2 scaffold_3 . exon 1446002 1446524 . - . ID=Physo128155.2;Parent=Physo128155;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1446619 1447451 . - 0 ID=Physo128155;Parent=Physo128155;rank=1 scaffold_3 . exon 1446619 1447451 . - . ID=Physo128155.1;Parent=Physo128155;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . biological_region 1454290 1454291 0.999 + . logic_name=eponine scaffold_3 . biological_region 1454375 1454382 0.999 - . logic_name=eponine scaffold_3 . biological_region 1454453 1454454 0.999 - . logic_name=eponine scaffold_3 . repeat_region 1455819 1455826 . ? . description=dust scaffold_3 . repeat_region 1456631 1456638 . ? . description=dust scaffold_3 . repeat_region 1459997 1460332 . - . description=GypsyPi-1c_I-int scaffold_3 . repeat_region 1462145 1462155 . ? . description=dust scaffold_3 ensembl protein_coding_gene 1453768 1454305 . - . ID=Physo128156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_30365;logic_name=jgi_physo1_1 scaffold_3 ensembl transcript 1453768 1454305 . - . ID=Physo128156;Parent=Physo128156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_3 . CDS 1453768 1453867 . - 0 ID=Physo128156;Parent=Physo128156;rank=2 scaffold_3 . exon 1453768 1453867 . - . ID=Physo128156.2;Parent=Physo128156;constitutive=1;ensembl_phase=2;rank=2 scaffold_3 . CDS 1454040 1454305 . - 0 ID=Physo128156;Parent=Physo128156;rank=1 scaffold_3 . exon 1454040 1454305 . - . ID=Physo128156.1;Parent=Physo128156;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . repeat_region 1463280 1463314 . ? . description=trf scaffold_3 ensembl tRNA_gene 1472418 1472521 . - . ID=EPrPSOG00000000125;biotype=tRNA;description=tRNA-Tyr for anticodon GUA [Source:TRNASCAN_SE%3BAcc:tRNA-Tyr];external_name=tRNA-Tyr;logic_name=ncrna_eg scaffold_3 ensembl transcript 1472418 1472521 . - . ID=EPrPSOT00000000125;Parent=EPrPSOG00000000125;biotype=tRNA;logic_name=ncrna_eg scaffold_3 ensembl tRNA_gene 1471638 1471741 . - . ID=EPrPSOG00000000127;biotype=tRNA;description=tRNA-Tyr for anticodon GUA [Source:TRNASCAN_SE%3BAcc:tRNA-Tyr];external_name=tRNA-Tyr;logic_name=ncrna_eg scaffold_3 ensembl transcript 1471638 1471741 . - . ID=EPrPSOT00000000127;Parent=EPrPSOG00000000127;biotype=tRNA;logic_name=ncrna_eg scaffold_3 ensembl snRNA_gene 1468923 1469035 . - . ID=EPrPSOG00000000201;biotype=snRNA;description=U5 spliceosomal RNA [Source:RFAM%3BAcc:RF00020];external_name=U5;logic_name=ncrna_eg scaffold_3 ensembl snRNA 1468923 1469035 . - . ID=EPrPSOT00000000201;Parent=EPrPSOG00000000201;biotype=snRNA;logic_name=ncrna_eg scaffold_3 ensembl tRNA_gene 1471050 1471160 . + . ID=EPrPSOG00000000270;biotype=tRNA;description=tRNA-Tyr for anticodon GUA [Source:TRNASCAN_SE%3BAcc:tRNA-Tyr];external_name=tRNA-Tyr;logic_name=ncrna_eg scaffold_3 ensembl transcript 1471050 1471160 . + . ID=EPrPSOT00000000270;Parent=EPrPSOG00000000270;biotype=tRNA;logic_name=ncrna_eg scaffold_3 . exon 1472418 1472521 . - . ID=EPrPSOE00000000125;Parent=EPrPSOT00000000125;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . exon 1471638 1471741 . - . ID=EPrPSOE00000000127;Parent=EPrPSOT00000000127;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . exon 1468923 1469035 . - . ID=EPrPSOE00000000201;Parent=EPrPSOT00000000201;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_3 . exon 1471050 1471160 . + . ID=EPrPSOE00000000270;Parent=EPrPSOT00000000270;constitutive=1;rank=1 ##gff-version 3 ##sequence-region scaffold_2 1 1543540 scaffold_2 . repeat_region 799 5295 . ? . description=dust scaffold_2 . repeat_region 5510 5560 . ? . description=trf scaffold_2 . repeat_region 5510 5562 . ? . description=trf scaffold_2 . repeat_region 5602 5635 . ? . description=trf scaffold_2 . repeat_region 5637 5674 . ? . description=trf scaffold_2 . repeat_region 8283 12205 . ? . description=dust scaffold_2 . biological_region 14682 14684 0.999 - . logic_name=eponine scaffold_2 . biological_region 19284 19286 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 14684 14827 . - . ID=Physo110395;biotype=protein_coding;external_name=estExt_Genewise1.C_20241;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 14684 14827 . - . ID=Physo110395;Parent=Physo110395;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 14684 14827 . - 0 ID=Physo110395;Parent=Physo110395;rank=1 scaffold_2 . exon 14684 14827 . - . ID=Physo110395.1;Parent=Physo110395;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 19217 21448 . - . ID=Physo127425;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20001;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 19217 21448 . - . ID=Physo127425;Parent=Physo127425;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 19217 21448 . - 0 ID=Physo127425;Parent=Physo127425;rank=1 scaffold_2 . exon 19217 21448 . - . ID=Physo127425.1;Parent=Physo127425;constitutive=1;rank=1 scaffold_2 . repeat_region 23711 24026 . ? . description=dust scaffold_2 . repeat_region 25336 25385 . ? . description=dust scaffold_2 . repeat_region 27318 27330 . ? . description=dust scaffold_2 ensembl protein_coding_gene 22557 26430 . + . ID=Physo127426;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20002;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 22557 26430 . + . ID=Physo127426;Parent=Physo127426;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 22557 23691 . + 0 ID=Physo127426;Parent=Physo127426;rank=1 scaffold_2 . exon 22557 23691 . + . ID=Physo127426.1;Parent=Physo127426;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 24034 25076 . + 0 ID=Physo127426;Parent=Physo127426;rank=2 scaffold_2 . exon 24034 25076 . + . ID=Physo127426.2;Parent=Physo127426;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 25435 26430 . + 0 ID=Physo127426;Parent=Physo127426;rank=3 scaffold_2 . exon 25435 26430 . + . ID=Physo127426.3;Parent=Physo127426;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 27466 27912 . - . ID=Physo127427;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20003;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 27466 27912 . - . ID=Physo127427;Parent=Physo127427;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 27466 27912 . - 0 ID=Physo127427;Parent=Physo127427;rank=1 scaffold_2 . exon 27466 27912 . - . ID=Physo127427.1;Parent=Physo127427;constitutive=1;rank=1 scaffold_2 . repeat_region 30343 30580 . - . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 30754 30773 . ? . description=trf scaffold_2 . repeat_region 31275 32650 . - . description=GypsyPi-1c_I-int scaffold_2 . biological_region 33182 33188 0.999 + . logic_name=eponine scaffold_2 . biological_region 33238 33241 0.999 - . logic_name=eponine scaffold_2 . biological_region 33308 33310 0.999 - . logic_name=eponine scaffold_2 . biological_region 33781 33784 0.999 - . logic_name=eponine scaffold_2 . biological_region 37677 37677 0.999 + . logic_name=eponine scaffold_2 . biological_region 37771 37775 0.999 - . logic_name=eponine scaffold_2 . biological_region 38270 38274 0.999 - . logic_name=eponine scaffold_2 . biological_region 39579 39579 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 30581 33021 . - . ID=Physo127428;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20004;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 30581 33021 . - . ID=Physo127428;Parent=Physo127428;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 30581 30587 . - 0 ID=Physo127428;Parent=Physo127428;rank=3 scaffold_2 . exon 30581 30587 . - . ID=Physo127428.3;Parent=Physo127428;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 30628 30841 . - 0 ID=Physo127428;Parent=Physo127428;rank=2 scaffold_2 . exon 30628 30841 . - . ID=Physo127428.2;Parent=Physo127428;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 30918 33021 . - 0 ID=Physo127428;Parent=Physo127428;rank=1 scaffold_2 . exon 30918 33021 . - . ID=Physo127428.1;Parent=Physo127428;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 36226 38531 . - . ID=Physo127429;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20005;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 36226 38531 . - . ID=Physo127429;Parent=Physo127429;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 36226 36275 . - 0 ID=Physo127429;Parent=Physo127429;rank=5 scaffold_2 . exon 36226 36275 . - . ID=Physo127429.5;Parent=Physo127429;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 36393 37092 . - 0 ID=Physo127429;Parent=Physo127429;rank=4 scaffold_2 . exon 36393 37092 . - . ID=Physo127429.4;Parent=Physo127429;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 37197 37479 . - 0 ID=Physo127429;Parent=Physo127429;rank=3 scaffold_2 . exon 37197 37479 . - . ID=Physo127429.3;Parent=Physo127429;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 37578 38435 . - 0 ID=Physo127429;Parent=Physo127429;rank=2 scaffold_2 . exon 37578 38435 . - . ID=Physo127429.2;Parent=Physo127429;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 38521 38531 . - 0 ID=Physo127429;Parent=Physo127429;rank=1 scaffold_2 . exon 38521 38531 . - . ID=Physo127429.1;Parent=Physo127429;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 39815 42782 . - . ID=Physo127430;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20006;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 39815 42782 . - . ID=Physo127430;Parent=Physo127430;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 39815 40244 . - 0 ID=Physo127430;Parent=Physo127430;rank=8 scaffold_2 . exon 39815 40244 . - . ID=Physo127430.8;Parent=Physo127430;constitutive=1;ensembl_phase=2;rank=8 scaffold_2 . CDS 40348 40551 . - 0 ID=Physo127430;Parent=Physo127430;rank=7 scaffold_2 . CDS 40748 40856 . - 0 ID=Physo127430;Parent=Physo127430;rank=6 scaffold_2 . CDS 40981 40994 . - 0 ID=Physo127430;Parent=Physo127430;rank=5 scaffold_2 . CDS 41110 41821 . - 0 ID=Physo127430;Parent=Physo127430;rank=4 scaffold_2 . CDS 41881 42406 . - 0 ID=Physo127430;Parent=Physo127430;rank=3 scaffold_2 . CDS 42442 42559 . - 0 ID=Physo127430;Parent=Physo127430;rank=2 scaffold_2 . CDS 42658 42782 . - 0 ID=Physo127430;Parent=Physo127430;rank=1 scaffold_2 . repeat_region 44043 44057 . ? . description=dust scaffold_2 . repeat_region 44949 44957 . ? . description=dust scaffold_2 . exon 40348 40551 . - . ID=Physo127430.7;Parent=Physo127430;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_2 . exon 40748 40856 . - . ID=Physo127430.6;Parent=Physo127430;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_2 . exon 40981 40994 . - . ID=Physo127430.5;Parent=Physo127430;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . exon 41110 41821 . - . ID=Physo127430.4;Parent=Physo127430;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . exon 41881 42406 . - . ID=Physo127430.3;Parent=Physo127430;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . exon 42442 42559 . - . ID=Physo127430.2;Parent=Physo127430;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . exon 42658 42782 . - . ID=Physo127430.1;Parent=Physo127430;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . repeat_region 51379 51406 . ? . description=trf scaffold_2 . biological_region 52169 52170 0.999 + . logic_name=eponine scaffold_2 . repeat_region 52194 52213 . ? . description=trf scaffold_2 . biological_region 52260 52263 0.999 - . logic_name=eponine scaffold_2 . biological_region 52995 53003 0.999 + . logic_name=eponine scaffold_2 . biological_region 53003 53007 0.999 - . logic_name=eponine scaffold_2 . repeat_region 54015 54039 . ? . description=trf scaffold_2 . biological_region 55145 55148 0.999 - . logic_name=eponine scaffold_2 . biological_region 55799 55803 0.999 - . logic_name=eponine scaffold_2 . biological_region 56353 56354 0.999 + . logic_name=eponine scaffold_2 . repeat_region 57495 57519 . ? . description=trf scaffold_2 ensembl protein_coding_gene 51709 54015 . - . ID=Physo127431;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20007;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 51709 54015 . - . ID=Physo127431;Parent=Physo127431;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 51709 51950 . - 0 ID=Physo127431;Parent=Physo127431;rank=4 scaffold_2 . exon 51709 51950 . - . ID=Physo127431.4;Parent=Physo127431;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 52400 53183 . - 0 ID=Physo127431;Parent=Physo127431;rank=3 scaffold_2 . exon 52400 53183 . - . ID=Physo127431.3;Parent=Physo127431;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 53399 53573 . - 0 ID=Physo127431;Parent=Physo127431;rank=2 scaffold_2 . exon 53399 53573 . - . ID=Physo127431.2;Parent=Physo127431;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 53627 54015 . - 0 ID=Physo127431;Parent=Physo127431;rank=1 scaffold_2 . exon 53627 54015 . - . ID=Physo127431.1;Parent=Physo127431;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 55874 56779 . + . ID=Physo127432;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20008;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 55874 56779 . + . ID=Physo127432;Parent=Physo127432;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 55874 56047 . + 0 ID=Physo127432;Parent=Physo127432;rank=1 scaffold_2 . exon 55874 56047 . + . ID=Physo127432.1;Parent=Physo127432;constitutive=1;rank=1 scaffold_2 . CDS 56193 56292 . + 0 ID=Physo127432;Parent=Physo127432;rank=2 scaffold_2 . exon 56193 56292 . + . ID=Physo127432.2;Parent=Physo127432;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 56328 56779 . + 0 ID=Physo127432;Parent=Physo127432;rank=3 scaffold_2 . exon 56328 56779 . + . ID=Physo127432.3;Parent=Physo127432;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . repeat_region 59369 65648 . ? . description=dust scaffold_2 ensembl protein_coding_gene 68621 69541 . + . ID=Physo127433;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20009;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 68621 69541 . + . ID=Physo127433;Parent=Physo127433;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 68621 69541 . + 0 ID=Physo127433;Parent=Physo127433;rank=1 scaffold_2 . exon 68621 69541 . + . ID=Physo127433.1;Parent=Physo127433;constitutive=1;rank=1 scaffold_2 . biological_region 70057 70060 0.999 + . logic_name=eponine scaffold_2 . biological_region 70070 70073 0.999 - . logic_name=eponine scaffold_2 . biological_region 70134 70138 0.999 - . logic_name=eponine scaffold_2 . biological_region 70574 70574 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 72885 74372 . - . ID=Physo127434;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20010;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 72885 74372 . - . ID=Physo127434;Parent=Physo127434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 72885 73393 . - 0 ID=Physo127434;Parent=Physo127434;rank=3 scaffold_2 . exon 72885 73393 . - . ID=Physo127434.3;Parent=Physo127434;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 73542 73725 . - 0 ID=Physo127434;Parent=Physo127434;rank=2 scaffold_2 . exon 73542 73725 . - . ID=Physo127434.2;Parent=Physo127434;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 74028 74372 . - 0 ID=Physo127434;Parent=Physo127434;rank=1 scaffold_2 . exon 74028 74372 . - . ID=Physo127434.1;Parent=Physo127434;constitutive=1;rank=1 scaffold_2 . repeat_region 81214 83597 . + . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 83867 84147 . + . description=GypsyPi-1c_I-int scaffold_2 ensembl protein_coding_gene 87977 89682 . + . ID=Physo110399;biotype=protein_coding;external_name=estExt_Genewise1.C_20245;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 87977 89682 . + . ID=Physo110399;Parent=Physo110399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 87977 88739 . + 0 ID=Physo110399;Parent=Physo110399;rank=1 scaffold_2 . exon 87977 88739 . + . ID=Physo110399.1;Parent=Physo110399;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 88816 89060 . + 0 ID=Physo110399;Parent=Physo110399;rank=2 scaffold_2 . exon 88816 89060 . + . ID=Physo110399.2;Parent=Physo110399;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 89133 89255 . + 0 ID=Physo110399;Parent=Physo110399;rank=3 scaffold_2 . exon 89133 89255 . + . ID=Physo110399.3;Parent=Physo110399;constitutive=1;rank=3 scaffold_2 . CDS 89331 89449 . + 0 ID=Physo110399;Parent=Physo110399;rank=4 scaffold_2 . exon 89331 89449 . + . ID=Physo110399.4;Parent=Physo110399;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 89520 89682 . + 0 ID=Physo110399;Parent=Physo110399;rank=5 scaffold_2 . exon 89520 89682 . + . ID=Physo110399.5;Parent=Physo110399;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 ensembl protein_coding_gene 79874 83909 . + . ID=Physo127435;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20011;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 79874 83909 . + . ID=Physo127435;Parent=Physo127435;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 79874 81970 . + 0 ID=Physo127435;Parent=Physo127435;rank=1 scaffold_2 . exon 79874 81970 . + . ID=Physo127435.1;Parent=Physo127435;constitutive=1;rank=1 scaffold_2 . CDS 82017 82516 . + 0 ID=Physo127435;Parent=Physo127435;rank=2 scaffold_2 . exon 82017 82516 . + . ID=Physo127435.2;Parent=Physo127435;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 82640 82800 . + 0 ID=Physo127435;Parent=Physo127435;rank=3 scaffold_2 . exon 82640 82800 . + . ID=Physo127435.3;Parent=Physo127435;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 82821 83862 . + 0 ID=Physo127435;Parent=Physo127435;rank=4 scaffold_2 . exon 82821 83862 . + . ID=Physo127435.4;Parent=Physo127435;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 83903 83909 . + 0 ID=Physo127435;Parent=Physo127435;rank=5 scaffold_2 . exon 83903 83909 . + . ID=Physo127435.5;Parent=Physo127435;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 ensembl protein_coding_gene 84121 85691 . - . ID=Physo127436;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20012;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 84121 85691 . - . ID=Physo127436;Parent=Physo127436;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 84121 85575 . - 0 ID=Physo127436;Parent=Physo127436;rank=2 scaffold_2 . exon 84121 85575 . - . ID=Physo127436.2;Parent=Physo127436;constitutive=1;rank=2 scaffold_2 . CDS 85611 85691 . - 0 ID=Physo127436;Parent=Physo127436;rank=1 scaffold_2 . exon 85611 85691 . - . ID=Physo127436.1;Parent=Physo127436;constitutive=1;rank=1 scaffold_2 . biological_region 92887 92889 0.999 + . logic_name=eponine scaffold_2 . repeat_region 93085 93148 . ? . description=dust scaffold_2 . repeat_region 93114 93137 . ? . description=trf scaffold_2 . repeat_region 94475 94500 . ? . description=trf scaffold_2 . biological_region 95920 95920 0.999 - . logic_name=eponine scaffold_2 . repeat_region 97823 97857 . ? . description=dust scaffold_2 ensembl protein_coding_gene 95858 96265 . + . ID=Physo108169;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20001;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 95858 96265 . + . ID=Physo108169;Parent=Physo108169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 95858 96265 . + 0 ID=Physo108169;Parent=Physo108169;rank=1 scaffold_2 . exon 95858 96265 . + . ID=Physo108169.1;Parent=Physo108169;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 96447 97412 . - . ID=Physo108170;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20002;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 96447 97412 . - . ID=Physo108170;Parent=Physo108170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 96447 96569 . - 0 ID=Physo108170;Parent=Physo108170;rank=5 scaffold_2 . exon 96447 96569 . - . ID=Physo108170.5;Parent=Physo108170;constitutive=1;rank=5 scaffold_2 . CDS 96630 96788 . - 0 ID=Physo108170;Parent=Physo108170;rank=4 scaffold_2 . exon 96630 96788 . - . ID=Physo108170.4;Parent=Physo108170;constitutive=1;rank=4 scaffold_2 . CDS 96873 96920 . - 0 ID=Physo108170;Parent=Physo108170;rank=3 scaffold_2 . exon 96873 96920 . - . ID=Physo108170.3;Parent=Physo108170;constitutive=1;rank=3 scaffold_2 . CDS 96988 97197 . - 0 ID=Physo108170;Parent=Physo108170;rank=2 scaffold_2 . exon 96988 97197 . - . ID=Physo108170.2;Parent=Physo108170;constitutive=1;rank=2 scaffold_2 . CDS 97281 97412 . - 0 ID=Physo108170;Parent=Physo108170;rank=1 scaffold_2 . exon 97281 97412 . - . ID=Physo108170.1;Parent=Physo108170;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 89886 93809 . - . ID=Physo127438;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20014;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 89886 93809 . - . ID=Physo127438;Parent=Physo127438;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 89886 93809 . - 0 ID=Physo127438;Parent=Physo127438;rank=1 scaffold_2 . exon 89886 93809 . - . ID=Physo127438.1;Parent=Physo127438;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 97562 99774 . + . ID=Physo127441;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20017;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 97562 99774 . + . ID=Physo127441;Parent=Physo127441;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 97562 97828 . + 0 ID=Physo127441;Parent=Physo127441;rank=1 scaffold_2 . exon 97562 97828 . + . ID=Physo127441.1;Parent=Physo127441;constitutive=1;rank=1 scaffold_2 . CDS 97889 98211 . + 0 ID=Physo127441;Parent=Physo127441;rank=2 scaffold_2 . exon 97889 98211 . + . ID=Physo127441.2;Parent=Physo127441;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 98301 98394 . + 0 ID=Physo127441;Parent=Physo127441;rank=3 scaffold_2 . exon 98301 98394 . + . ID=Physo127441.3;Parent=Physo127441;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 98479 99774 . + 0 ID=Physo127441;Parent=Physo127441;rank=4 scaffold_2 . exon 98479 99774 . + . ID=Physo127441.4;Parent=Physo127441;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 104729 105601 . - . ID=Physo108171;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20003;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 104729 105601 . - . ID=Physo108171;Parent=Physo108171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 104729 104950 . - 0 ID=Physo108171;Parent=Physo108171;rank=5 scaffold_2 . exon 104729 104950 . - . ID=Physo108171.5;Parent=Physo108171;constitutive=1;rank=5 scaffold_2 . CDS 105030 105119 . - 0 ID=Physo108171;Parent=Physo108171;rank=4 scaffold_2 . exon 105030 105119 . - . ID=Physo108171.4;Parent=Physo108171;constitutive=1;rank=4 scaffold_2 . CDS 105186 105258 . - 0 ID=Physo108171;Parent=Physo108171;rank=3 scaffold_2 . exon 105186 105258 . - . ID=Physo108171.3;Parent=Physo108171;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 105333 105443 . - 0 ID=Physo108171;Parent=Physo108171;rank=2 scaffold_2 . exon 105333 105443 . - . ID=Physo108171.2;Parent=Physo108171;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 105537 105601 . - 0 ID=Physo108171;Parent=Physo108171;rank=1 scaffold_2 . exon 105537 105601 . - . ID=Physo108171.1;Parent=Physo108171;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 107205 108225 . + . ID=Physo108172;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20004;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 107205 108225 . + . ID=Physo108172;Parent=Physo108172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 107205 107306 . + 0 ID=Physo108172;Parent=Physo108172;rank=1 scaffold_2 . exon 107205 107306 . + . ID=Physo108172.1;Parent=Physo108172;constitutive=1;rank=1 scaffold_2 . CDS 107374 107541 . + 0 ID=Physo108172;Parent=Physo108172;rank=2 scaffold_2 . exon 107374 107541 . + . ID=Physo108172.2;Parent=Physo108172;constitutive=1;rank=2 scaffold_2 . CDS 107618 107731 . + 0 ID=Physo108172;Parent=Physo108172;rank=3 scaffold_2 . exon 107618 107731 . + . ID=Physo108172.3;Parent=Physo108172;constitutive=1;rank=3 scaffold_2 . CDS 107818 107891 . + 0 ID=Physo108172;Parent=Physo108172;rank=4 scaffold_2 . exon 107818 107891 . + . ID=Physo108172.4;Parent=Physo108172;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 107997 108225 . + 0 ID=Physo108172;Parent=Physo108172;rank=5 scaffold_2 . exon 107997 108225 . + . ID=Physo108172.5;Parent=Physo108172;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 ensembl protein_coding_gene 108592 110490 . + . ID=Physo108173;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20005;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 108592 110490 . + . ID=Physo108173;Parent=Physo108173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 108592 110490 . + . ID=Physo108173.1;Parent=Physo108173;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 108646 110490 . + 0 ID=Physo108173;Parent=Physo108173;rank=1 scaffold_2 ensembl protein_coding_gene 102789 104428 . - . ID=Physo127442;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20018;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 102789 104428 . - . ID=Physo127442;Parent=Physo127442;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 102789 102791 . - 0 ID=Physo127442;Parent=Physo127442;rank=3 scaffold_2 . exon 102789 102791 . - . ID=Physo127442.3;Parent=Physo127442;constitutive=1;rank=3 scaffold_2 . CDS 102817 103028 . - 0 ID=Physo127442;Parent=Physo127442;rank=2 scaffold_2 . exon 102817 103028 . - . ID=Physo127442.2;Parent=Physo127442;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 103180 104428 . - 0 ID=Physo127442;Parent=Physo127442;rank=1 scaffold_2 . exon 103180 104428 . - . ID=Physo127442.1;Parent=Physo127442;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 105744 106929 . + . ID=Physo127444;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20020;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 105744 106929 . + . ID=Physo127444;Parent=Physo127444;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 105744 106070 . + 0 ID=Physo127444;Parent=Physo127444;rank=1 scaffold_2 . exon 105744 106070 . + . ID=Physo127444.1;Parent=Physo127444;constitutive=1;rank=1 scaffold_2 . CDS 106718 106754 . + 0 ID=Physo127444;Parent=Physo127444;rank=2 scaffold_2 . exon 106718 106754 . + . ID=Physo127444.2;Parent=Physo127444;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 106833 106861 . + 0 ID=Physo127444;Parent=Physo127444;rank=3 scaffold_2 . exon 106833 106861 . + . ID=Physo127444.3;Parent=Physo127444;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 106894 106929 . + 0 ID=Physo127444;Parent=Physo127444;rank=4 scaffold_2 . exon 106894 106929 . + . ID=Physo127444.4;Parent=Physo127444;constitutive=1;rank=4 scaffold_2 . repeat_region 117509 117556 . ? . description=dust scaffold_2 . repeat_region 117510 117541 . ? . description=trf scaffold_2 . biological_region 117819 117823 0.999 + . logic_name=eponine scaffold_2 . biological_region 118037 118039 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 110699 111919 . - . ID=Physo127447;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20023;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 110699 111919 . - . ID=Physo127447;Parent=Physo127447;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 110699 111919 . - 0 ID=Physo127447;Parent=Physo127447;rank=1 scaffold_2 . exon 110699 111919 . - . ID=Physo127447.1;Parent=Physo127447;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 113665 117585 . - . ID=Physo127449;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20025;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 113665 117585 . - . ID=Physo127449;Parent=Physo127449;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 113665 115529 . - 0 ID=Physo127449;Parent=Physo127449;rank=4 scaffold_2 . exon 113665 115529 . - . ID=Physo127449.4;Parent=Physo127449;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 115597 117257 . - 0 ID=Physo127449;Parent=Physo127449;rank=3 scaffold_2 . exon 115597 117257 . - . ID=Physo127449.3;Parent=Physo127449;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 117363 117460 . - 0 ID=Physo127449;Parent=Physo127449;rank=2 scaffold_2 . exon 117363 117460 . - . ID=Physo127449.2;Parent=Physo127449;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 117544 117585 . - 0 ID=Physo127449;Parent=Physo127449;rank=1 scaffold_2 . exon 117544 117585 . - . ID=Physo127449.1;Parent=Physo127449;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 112780 113549 . + . ID=Physo155292;biotype=protein_coding;external_name=C_scaffold_2000001;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 112780 113549 . + . ID=Physo155292;Parent=Physo155292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 112780 112958 . + 0 ID=Physo155292;Parent=Physo155292;rank=1 scaffold_2 . exon 112780 112958 . + . ID=Physo155292.1;Parent=Physo155292;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 113034 113136 . + 0 ID=Physo155292;Parent=Physo155292;rank=2 scaffold_2 . exon 113034 113136 . + . ID=Physo155292.2;Parent=Physo155292;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 113200 113330 . + 0 ID=Physo155292;Parent=Physo155292;rank=3 scaffold_2 . exon 113200 113330 . + . ID=Physo155292.3;Parent=Physo155292;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 113379 113425 . + 0 ID=Physo155292;Parent=Physo155292;rank=4 scaffold_2 . exon 113379 113425 . + . ID=Physo155292.4;Parent=Physo155292;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 113530 113549 . + 0 ID=Physo155292;Parent=Physo155292;rank=5 scaffold_2 . exon 113530 113549 . + . ID=Physo155292.5;Parent=Physo155292;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 ensembl protein_coding_gene 117798 118689 . + . ID=Physo155294;biotype=protein_coding;external_name=C_scaffold_2000003;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 117798 118689 . + . ID=Physo155294;Parent=Physo155294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 117798 117812 . + 0 ID=Physo155294;Parent=Physo155294;rank=1 scaffold_2 . exon 117798 117812 . + . ID=Physo155294.1;Parent=Physo155294;constitutive=1;rank=1 scaffold_2 . CDS 117847 118136 . + 0 ID=Physo155294;Parent=Physo155294;rank=2 scaffold_2 . exon 117847 118136 . + . ID=Physo155294.2;Parent=Physo155294;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 118215 118321 . + 0 ID=Physo155294;Parent=Physo155294;rank=3 scaffold_2 . exon 118215 118321 . + . ID=Physo155294.3;Parent=Physo155294;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 118401 118498 . + 0 ID=Physo155294;Parent=Physo155294;rank=4 scaffold_2 . exon 118401 118498 . + . ID=Physo155294.4;Parent=Physo155294;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 118639 118689 . + 0 ID=Physo155294;Parent=Physo155294;rank=5 scaffold_2 . exon 118639 118689 . + . ID=Physo155294.5;Parent=Physo155294;constitutive=1;rank=5 scaffold_2 ensembl protein_coding_gene 121890 123800 . + . ID=Physo127451;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20027;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 121890 123800 . + . ID=Physo127451;Parent=Physo127451;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 121890 122309 . + 0 ID=Physo127451;Parent=Physo127451;rank=1 scaffold_2 . exon 121890 122309 . + . ID=Physo127451.1;Parent=Physo127451;constitutive=1;rank=1 scaffold_2 . CDS 122713 122784 . + 0 ID=Physo127451;Parent=Physo127451;rank=2 scaffold_2 . exon 122713 122784 . + . ID=Physo127451.2;Parent=Physo127451;constitutive=1;rank=2 scaffold_2 . CDS 122833 123309 . + 0 ID=Physo127451;Parent=Physo127451;rank=3 scaffold_2 . exon 122833 123309 . + . ID=Physo127451.3;Parent=Physo127451;constitutive=1;rank=3 scaffold_2 . CDS 123375 123800 . + 0 ID=Physo127451;Parent=Physo127451;rank=4 scaffold_2 . exon 123375 123800 . + . ID=Physo127451.4;Parent=Physo127451;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 123955 124524 . - . ID=Physo127452;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20028;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 123955 124524 . - . ID=Physo127452;Parent=Physo127452;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 123955 124524 . - 0 ID=Physo127452;Parent=Physo127452;rank=1 scaffold_2 . exon 123955 124524 . - . ID=Physo127452.1;Parent=Physo127452;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 124988 126109 . + . ID=Physo127453;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20029;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 124988 126109 . + . ID=Physo127453;Parent=Physo127453;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 124988 126109 . + 0 ID=Physo127453;Parent=Physo127453;rank=1 scaffold_2 . exon 124988 126109 . + . ID=Physo127453.1;Parent=Physo127453;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 126560 128149 . - . ID=Physo127454;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20030;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 126560 128149 . - . ID=Physo127454;Parent=Physo127454;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 126560 128149 . - 0 ID=Physo127454;Parent=Physo127454;rank=1 scaffold_2 . exon 126560 128149 . - . ID=Physo127454.1;Parent=Physo127454;constitutive=1;rank=1 scaffold_2 . repeat_region 130538 130593 . ? . description=trf scaffold_2 . repeat_region 130573 130627 . ? . description=trf scaffold_2 . repeat_region 130593 130695 . ? . description=trf scaffold_2 . biological_region 131706 131707 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 134840 136222 . + . ID=Physo127455;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20031;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 134840 136222 . + . ID=Physo127455;Parent=Physo127455;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 134840 136222 . + 0 ID=Physo127455;Parent=Physo127455;rank=1 scaffold_2 . exon 134840 136222 . + . ID=Physo127455.1;Parent=Physo127455;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 137070 139046 . + . ID=Physo127456;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20032;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 137070 139046 . + . ID=Physo127456;Parent=Physo127456;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 137070 137082 . + 0 ID=Physo127456;Parent=Physo127456;rank=1 scaffold_2 . exon 137070 137082 . + . ID=Physo127456.1;Parent=Physo127456;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 137572 139046 . + 0 ID=Physo127456;Parent=Physo127456;rank=2 scaffold_2 . exon 137572 139046 . + . ID=Physo127456.2;Parent=Physo127456;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . repeat_region 141180 141886 . ? . description=dust scaffold_2 . repeat_region 143121 148420 . ? . description=dust scaffold_2 . repeat_region 148421 148533 . ? . description=dust scaffold_2 . repeat_region 149237 149421 . ? . description=dust scaffold_2 ensembl protein_coding_gene 139813 142800 . + . ID=Physo127457;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20033;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 139813 142800 . + . ID=Physo127457;Parent=Physo127457;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 139813 139858 . + 0 ID=Physo127457;Parent=Physo127457;rank=1 scaffold_2 . exon 139813 139858 . + . ID=Physo127457.1;Parent=Physo127457;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 139918 140459 . + 0 ID=Physo127457;Parent=Physo127457;rank=2 scaffold_2 . exon 139918 140459 . + . ID=Physo127457.2;Parent=Physo127457;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 140614 141149 . + 0 ID=Physo127457;Parent=Physo127457;rank=3 scaffold_2 . exon 140614 141149 . + . ID=Physo127457.3;Parent=Physo127457;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 141942 142093 . + 0 ID=Physo127457;Parent=Physo127457;rank=4 scaffold_2 . exon 141942 142093 . + . ID=Physo127457.4;Parent=Physo127457;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 142165 142729 . + 0 ID=Physo127457;Parent=Physo127457;rank=5 scaffold_2 . exon 142165 142729 . + . ID=Physo127457.5;Parent=Physo127457;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_2 . CDS 142758 142800 . + 0 ID=Physo127457;Parent=Physo127457;rank=6 scaffold_2 . exon 142758 142800 . + . ID=Physo127457.6;Parent=Physo127457;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . repeat_region 155489 155528 . ? . description=trf scaffold_2 . biological_region 156854 156856 0.999 + . logic_name=eponine scaffold_2 . biological_region 156919 156920 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 149667 150821 . - . ID=Physo127458;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20034;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 149667 150821 . - . ID=Physo127458;Parent=Physo127458;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 149667 150821 . - 0 ID=Physo127458;Parent=Physo127458;rank=1 scaffold_2 . exon 149667 150821 . - . ID=Physo127458.1;Parent=Physo127458;constitutive=1;rank=1 scaffold_2 . repeat_region 160559 160598 . ? . description=dust scaffold_2 . repeat_region 164128 164137 . ? . description=dust scaffold_2 . repeat_region 165511 165524 . ? . description=dust scaffold_2 . repeat_region 166226 166246 . ? . description=dust scaffold_2 . repeat_region 166887 166901 . ? . description=dust scaffold_2 ensembl protein_coding_gene 159953 160559 . - . ID=Physo127459;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20035;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 159953 160559 . - . ID=Physo127459;Parent=Physo127459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 159953 160018 . - 0 ID=Physo127459;Parent=Physo127459;rank=2 scaffold_2 . exon 159953 160018 . - . ID=Physo127459.2;Parent=Physo127459;constitutive=1;rank=2 scaffold_2 . CDS 160041 160559 . - 0 ID=Physo127459;Parent=Physo127459;rank=1 scaffold_2 . exon 160041 160559 . - . ID=Physo127459.1;Parent=Physo127459;constitutive=1;rank=1 scaffold_2 . biological_region 170448 170450 0.999 - . logic_name=eponine scaffold_2 . biological_region 170465 170467 0.999 + . logic_name=eponine scaffold_2 . biological_region 170468 170471 0.999 - . logic_name=eponine scaffold_2 . repeat_region 171730 171777 . ? . description=trf scaffold_2 . repeat_region 172145 172207 . ? . description=trf scaffold_2 . biological_region 175436 175437 0.999 + . logic_name=eponine scaffold_2 . repeat_region 178480 178783 . - . description=GypsyPi-1c_LTR scaffold_2 . repeat_region 178784 179105 . - . description=GypsyPi-1c_I-int scaffold_2 . biological_region 179038 179039 0.999 + . logic_name=eponine scaffold_2 . biological_region 179232 179237 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 172040 174295 . + . ID=Physo127460;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20036;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 172040 174295 . + . ID=Physo127460;Parent=Physo127460;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 172040 172130 . + 0 ID=Physo127460;Parent=Physo127460;rank=1 scaffold_2 . exon 172040 172130 . + . ID=Physo127460.1;Parent=Physo127460;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 172177 172944 . + 0 ID=Physo127460;Parent=Physo127460;rank=2 scaffold_2 . exon 172177 172944 . + . ID=Physo127460.2;Parent=Physo127460;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 173051 173512 . + 0 ID=Physo127460;Parent=Physo127460;rank=3 scaffold_2 . exon 173051 173512 . + . ID=Physo127460.3;Parent=Physo127460;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 173950 174137 . + 0 ID=Physo127460;Parent=Physo127460;rank=4 scaffold_2 . exon 173950 174295 . + . ID=Physo127460.4;Parent=Physo127460;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 178678 181171 . + . ID=Physo127461;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20037;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 178678 181171 . + . ID=Physo127461;Parent=Physo127461;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 178678 178731 . + 0 ID=Physo127461;Parent=Physo127461;rank=1 scaffold_2 . exon 178678 178731 . + . ID=Physo127461.1;Parent=Physo127461;constitutive=1;rank=1 scaffold_2 . CDS 178861 179694 . + 0 ID=Physo127461;Parent=Physo127461;rank=2 scaffold_2 . exon 178861 179694 . + . ID=Physo127461.2;Parent=Physo127461;constitutive=1;rank=2 scaffold_2 . CDS 179781 180370 . + 0 ID=Physo127461;Parent=Physo127461;rank=3 scaffold_2 . CDS 180571 181171 . + 0 ID=Physo127461;Parent=Physo127461;rank=4 scaffold_2 . repeat_region 182445 183365 . ? . description=dust scaffold_2 . repeat_region 185176 185773 . ? . description=dust scaffold_2 . repeat_region 187126 188183 . ? . description=dust scaffold_2 ensembl protein_coding_gene 181678 182073 . - . ID=Physo110434;biotype=protein_coding;external_name=estExt_Genewise1.C_20280;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 181678 182073 . - . ID=Physo110434;Parent=Physo110434;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 181678 182067 . - 0 ID=Physo110434;Parent=Physo110434;rank=1 scaffold_2 . exon 181678 182073 . - . ID=Physo110434.1;Parent=Physo110434;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . exon 179781 180370 . + . ID=Physo127461.3;Parent=Physo127461;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . exon 180571 181171 . + . ID=Physo127461.4;Parent=Physo127461;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 ensembl protein_coding_gene 183624 184082 . - . ID=Physo127462;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20038;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 183624 184082 . - . ID=Physo127462;Parent=Physo127462;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 183624 184082 . - 0 ID=Physo127462;Parent=Physo127462;rank=1 scaffold_2 . exon 183624 184082 . - . ID=Physo127462.1;Parent=Physo127462;constitutive=1;rank=1 scaffold_2 . repeat_region 191646 191750 . - . description=GypsyPi-1c_I-int scaffold_2 . biological_region 191655 191661 0.999 + . logic_name=eponine scaffold_2 . repeat_region 191843 191954 . ? . description=trf scaffold_2 . repeat_region 191843 191973 . ? . description=trf scaffold_2 . repeat_region 191903 191975 . ? . description=trf scaffold_2 . repeat_region 191954 193871 . - . description=GypsyPi-1c_I-int scaffold_2 . biological_region 193350 193350 0.999 + . logic_name=eponine scaffold_2 . biological_region 193368 193370 0.999 - . logic_name=eponine scaffold_2 . biological_region 193627 193627 0.999 - . logic_name=eponine scaffold_2 . repeat_region 193872 194175 . - . description=GypsyPi-1c_LTR scaffold_2 . repeat_region 197025 197067 . ? . description=trf scaffold_2 ensembl protein_coding_gene 192234 193784 . - . ID=Physo127463;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20039;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 192234 193784 . - . ID=Physo127463;Parent=Physo127463;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 192234 192577 . - 0 ID=Physo127463;Parent=Physo127463;rank=3 scaffold_2 . exon 192234 192577 . - . ID=Physo127463.3;Parent=Physo127463;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 192795 193113 . - 0 ID=Physo127463;Parent=Physo127463;rank=2 scaffold_2 . exon 192795 193113 . - . ID=Physo127463.2;Parent=Physo127463;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 193137 193784 . - 0 ID=Physo127463;Parent=Physo127463;rank=1 scaffold_2 . exon 193137 193784 . - . ID=Physo127463.1;Parent=Physo127463;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 195691 197172 . - . ID=Physo127464;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20040;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 195691 197172 . - . ID=Physo127464;Parent=Physo127464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 195691 196181 . - 0 ID=Physo127464;Parent=Physo127464;rank=3 scaffold_2 . exon 195691 196181 . - . ID=Physo127464.3;Parent=Physo127464;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 196288 197055 . - 0 ID=Physo127464;Parent=Physo127464;rank=2 scaffold_2 . exon 196288 197055 . - . ID=Physo127464.2;Parent=Physo127464;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 197082 197172 . - 0 ID=Physo127464;Parent=Physo127464;rank=1 scaffold_2 . exon 197082 197172 . - . ID=Physo127464.1;Parent=Physo127464;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 198552 200267 . ? . description=dust scaffold_2 ensembl protein_coding_gene 208844 210466 . - . ID=Physo110437;biotype=protein_coding;external_name=estExt_Genewise1.C_20283;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 208844 210466 . - . ID=Physo110437;Parent=Physo110437;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 208844 210427 . - 0 ID=Physo110437;Parent=Physo110437;rank=1 scaffold_2 . exon 208844 210466 . - . ID=Physo110437.1;Parent=Physo110437;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . biological_region 210252 210258 0.999 + . logic_name=eponine scaffold_2 . biological_region 210917 210920 0.999 - . logic_name=eponine scaffold_2 . biological_region 211005 211006 0.999 + . logic_name=eponine scaffold_2 . biological_region 213390 213392 0.999 + . logic_name=eponine scaffold_2 . biological_region 218111 218113 0.999 - . logic_name=eponine scaffold_2 . repeat_region 218546 218591 . ? . description=trf scaffold_2 ensembl protein_coding_gene 218314 220334 . + . ID=Physo108174;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20006;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 218314 220334 . + . ID=Physo108174;Parent=Physo108174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 218314 218446 . + 0 ID=Physo108174;Parent=Physo108174;rank=1 scaffold_2 . exon 218314 218446 . + . ID=Physo108174.1;Parent=Physo108174;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 218524 218645 . + 0 ID=Physo108174;Parent=Physo108174;rank=2 scaffold_2 . exon 218524 218645 . + . ID=Physo108174.2;Parent=Physo108174;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 218696 218786 . + 0 ID=Physo108174;Parent=Physo108174;rank=3 scaffold_2 . exon 218696 218786 . + . ID=Physo108174.3;Parent=Physo108174;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 218870 219027 . + 0 ID=Physo108174;Parent=Physo108174;rank=4 scaffold_2 . exon 218870 219027 . + . ID=Physo108174.4;Parent=Physo108174;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 219095 219210 . + 0 ID=Physo108174;Parent=Physo108174;rank=5 scaffold_2 . exon 219095 219210 . + . ID=Physo108174.5;Parent=Physo108174;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 219281 219511 . + 0 ID=Physo108174;Parent=Physo108174;rank=6 scaffold_2 . CDS 219585 219716 . + 0 ID=Physo108174;Parent=Physo108174;rank=7 scaffold_2 . CDS 219783 219870 . + 0 ID=Physo108174;Parent=Physo108174;rank=8 scaffold_2 . CDS 220061 220159 . + 0 ID=Physo108174;Parent=Physo108174;rank=9 scaffold_2 . CDS 220233 220334 . + 0 ID=Physo108174;Parent=Physo108174;rank=10 scaffold_2 ensembl protein_coding_gene 217388 218156 . - . ID=Physo155300;biotype=protein_coding;external_name=C_scaffold_2000009;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 217388 218156 . - . ID=Physo155300;Parent=Physo155300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 217388 217506 . - 0 ID=Physo155300;Parent=Physo155300;rank=3 scaffold_2 . exon 217388 217506 . - . ID=Physo155300.3;Parent=Physo155300;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 217586 217735 . - 0 ID=Physo155300;Parent=Physo155300;rank=2 scaffold_2 . exon 217586 217735 . - . ID=Physo155300.2;Parent=Physo155300;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 217817 218156 . - 0 ID=Physo155300;Parent=Physo155300;rank=1 scaffold_2 . exon 217817 218156 . - . ID=Physo155300.1;Parent=Physo155300;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 225500 225508 . ? . description=dust scaffold_2 . repeat_region 228038 228046 . ? . description=dust scaffold_2 . exon 219281 219511 . + . ID=Physo108174.6;Parent=Physo108174;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_2 . exon 219585 219716 . + . ID=Physo108174.7;Parent=Physo108174;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_2 . exon 219783 219870 . + . ID=Physo108174.8;Parent=Physo108174;constitutive=1;ensembl_phase=2;rank=8 scaffold_2 . exon 220061 220159 . + . ID=Physo108174.9;Parent=Physo108174;constitutive=1;rank=9 scaffold_2 . exon 220233 220334 . + . ID=Physo108174.10;Parent=Physo108174;constitutive=1;rank=10 scaffold_2 ensembl protein_coding_gene 223088 225532 . + . ID=Physo108175;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20007;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 223088 225532 . + . ID=Physo108175;Parent=Physo108175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 223088 223293 . + . ID=Physo108175.1;Parent=Physo108175;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 223144 223293 . + 0 ID=Physo108175;Parent=Physo108175;rank=1 scaffold_2 . CDS 223462 223536 . + 0 ID=Physo108175;Parent=Physo108175;rank=2 scaffold_2 . exon 223462 223536 . + . ID=Physo108175.2;Parent=Physo108175;constitutive=1;rank=2 scaffold_2 . CDS 223622 223718 . + 0 ID=Physo108175;Parent=Physo108175;rank=3 scaffold_2 . exon 223622 223718 . + . ID=Physo108175.3;Parent=Physo108175;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 223799 224722 . + 0 ID=Physo108175;Parent=Physo108175;rank=4 scaffold_2 . exon 223799 224722 . + . ID=Physo108175.4;Parent=Physo108175;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 224796 224990 . + 0 ID=Physo108175;Parent=Physo108175;rank=5 scaffold_2 . exon 224796 224990 . + . ID=Physo108175.5;Parent=Physo108175;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 225068 225225 . + 0 ID=Physo108175;Parent=Physo108175;rank=6 scaffold_2 . exon 225068 225532 . + . ID=Physo108175.6;Parent=Physo108175;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_2 ensembl protein_coding_gene 228529 229873 . - . ID=Physo127470;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20046;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 228529 229873 . - . ID=Physo127470;Parent=Physo127470;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 228529 228600 . - 0 ID=Physo127470;Parent=Physo127470;rank=3 scaffold_2 . exon 228529 228600 . - . ID=Physo127470.3;Parent=Physo127470;constitutive=1;rank=3 scaffold_2 . CDS 228629 229162 . - 0 ID=Physo127470;Parent=Physo127470;rank=2 scaffold_2 . exon 228629 229162 . - . ID=Physo127470.2;Parent=Physo127470;constitutive=1;rank=2 scaffold_2 . CDS 229367 229873 . - 0 ID=Physo127470;Parent=Physo127470;rank=1 scaffold_2 ensembl protein_coding_gene 220419 222802 . - . ID=Physo155303;biotype=protein_coding;external_name=C_scaffold_2000012;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 220419 222802 . - . ID=Physo155303;Parent=Physo155303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 220419 221030 . - 0 ID=Physo155303;Parent=Physo155303;rank=5 scaffold_2 . exon 220419 221030 . - . ID=Physo155303.5;Parent=Physo155303;constitutive=1;rank=5 scaffold_2 . CDS 221113 221388 . - 0 ID=Physo155303;Parent=Physo155303;rank=4 scaffold_2 . exon 221113 221388 . - . ID=Physo155303.4;Parent=Physo155303;constitutive=1;rank=4 scaffold_2 . CDS 221483 221786 . - 0 ID=Physo155303;Parent=Physo155303;rank=3 scaffold_2 . exon 221483 221786 . - . ID=Physo155303.3;Parent=Physo155303;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 221844 222529 . - 0 ID=Physo155303;Parent=Physo155303;rank=2 scaffold_2 . exon 221844 222529 . - . ID=Physo155303.2;Parent=Physo155303;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 222569 222802 . - 0 ID=Physo155303;Parent=Physo155303;rank=1 scaffold_2 . exon 222569 222802 . - . ID=Physo155303.1;Parent=Physo155303;constitutive=1;rank=1 scaffold_2 . biological_region 229533 229534 0.999 + . logic_name=eponine scaffold_2 . biological_region 232647 232648 0.999 - . logic_name=eponine scaffold_2 . repeat_region 235307 235459 . ? . description=trf scaffold_2 . repeat_region 237504 237656 . ? . description=trf scaffold_2 . exon 229367 229873 . - . ID=Physo127470.1;Parent=Physo127470;constitutive=1;rank=1 scaffold_2 . repeat_region 240193 240206 . ? . description=dust scaffold_2 . repeat_region 240341 240349 . ? . description=dust scaffold_2 . repeat_region 246851 246864 . ? . description=dust scaffold_2 ensembl protein_coding_gene 244278 245799 . + . ID=Physo110459;biotype=protein_coding;external_name=estExt_Genewise1.C_20305;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 244278 245799 . + . ID=Physo110459;Parent=Physo110459;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 244278 244326 . + . ID=Physo110459.1;Parent=Physo110459;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 244315 244326 . + 0 ID=Physo110459;Parent=Physo110459;rank=1 scaffold_2 . CDS 244415 244484 . + 0 ID=Physo110459;Parent=Physo110459;rank=2 scaffold_2 . exon 244415 244484 . + . ID=Physo110459.2;Parent=Physo110459;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 244565 244594 . + 0 ID=Physo110459;Parent=Physo110459;rank=3 scaffold_2 . exon 244565 244594 . + . ID=Physo110459.3;Parent=Physo110459;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 244688 244754 . + 0 ID=Physo110459;Parent=Physo110459;rank=4 scaffold_2 . exon 244688 244754 . + . ID=Physo110459.4;Parent=Physo110459;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 244841 244946 . + 0 ID=Physo110459;Parent=Physo110459;rank=5 scaffold_2 . exon 244841 244946 . + . ID=Physo110459.5;Parent=Physo110459;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 245035 245151 . + 0 ID=Physo110459;Parent=Physo110459;rank=6 scaffold_2 . exon 245035 245151 . + . ID=Physo110459.6;Parent=Physo110459;constitutive=1;rank=6 scaffold_2 . CDS 245232 245658 . + 0 ID=Physo110459;Parent=Physo110459;rank=7 scaffold_2 . exon 245232 245658 . + . ID=Physo110459.7;Parent=Physo110459;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_2 . CDS 245744 245799 . + 0 ID=Physo110459;Parent=Physo110459;rank=8 scaffold_2 . exon 245744 245799 . + . ID=Physo110459.8;Parent=Physo110459;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 ensembl protein_coding_gene 247811 249304 . + . ID=Physo110464;biotype=protein_coding;external_name=estExt_Genewise1.C_20310;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 247811 249304 . + . ID=Physo110464;Parent=Physo110464;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 247811 247936 . + . ID=Physo110464.1;Parent=Physo110464;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 247832 247936 . + 0 ID=Physo110464;Parent=Physo110464;rank=1 scaffold_2 . CDS 248005 248152 . + 0 ID=Physo110464;Parent=Physo110464;rank=2 scaffold_2 . exon 248005 248152 . + . ID=Physo110464.2;Parent=Physo110464;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 248219 248255 . + 0 ID=Physo110464;Parent=Physo110464;rank=3 scaffold_2 . exon 248219 248255 . + . ID=Physo110464.3;Parent=Physo110464;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 248322 248481 . + 0 ID=Physo110464;Parent=Physo110464;rank=4 scaffold_2 . exon 248322 248481 . + . ID=Physo110464.4;Parent=Physo110464;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 248556 248996 . + 0 ID=Physo110464;Parent=Physo110464;rank=5 scaffold_2 . exon 248556 248996 . + . ID=Physo110464.5;Parent=Physo110464;constitutive=1;rank=5 scaffold_2 . CDS 249076 249219 . + 0 ID=Physo110464;Parent=Physo110464;rank=6 scaffold_2 ensembl protein_coding_gene 240277 241310 . + . ID=Physo127471;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20047;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 240277 241310 . + . ID=Physo127471;Parent=Physo127471;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 240277 240302 . + 0 ID=Physo127471;Parent=Physo127471;rank=1 scaffold_2 . exon 240277 240302 . + . ID=Physo127471.1;Parent=Physo127471;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 240383 240487 . + 0 ID=Physo127471;Parent=Physo127471;rank=2 scaffold_2 . exon 240383 240487 . + . ID=Physo127471.2;Parent=Physo127471;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 240574 240646 . + 0 ID=Physo127471;Parent=Physo127471;rank=3 scaffold_2 . exon 240574 240646 . + . ID=Physo127471.3;Parent=Physo127471;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 240702 240767 . + 0 ID=Physo127471;Parent=Physo127471;rank=4 scaffold_2 . exon 240702 240767 . + . ID=Physo127471.4;Parent=Physo127471;constitutive=1;rank=4 scaffold_2 . CDS 240847 241164 . + 0 ID=Physo127471;Parent=Physo127471;rank=5 scaffold_2 . exon 240847 241164 . + . ID=Physo127471.5;Parent=Physo127471;constitutive=1;rank=5 scaffold_2 . CDS 241239 241310 . + 0 ID=Physo127471;Parent=Physo127471;rank=6 scaffold_2 . exon 241239 241310 . + . ID=Physo127471.6;Parent=Physo127471;constitutive=1;rank=6 scaffold_2 ensembl protein_coding_gene 243031 244163 . - . ID=Physo127472;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20048;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 243031 244163 . - . ID=Physo127472;Parent=Physo127472;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 243031 243075 . - 0 ID=Physo127472;Parent=Physo127472;rank=3 scaffold_2 . exon 243031 243075 . - . ID=Physo127472.3;Parent=Physo127472;constitutive=1;rank=3 scaffold_2 . CDS 243161 243285 . - 0 ID=Physo127472;Parent=Physo127472;rank=2 scaffold_2 . exon 243161 243285 . - . ID=Physo127472.2;Parent=Physo127472;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 243362 244163 . - 0 ID=Physo127472;Parent=Physo127472;rank=1 scaffold_2 . exon 243362 244163 . - . ID=Physo127472.1;Parent=Physo127472;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . biological_region 252284 252287 0.999 + . logic_name=eponine scaffold_2 . biological_region 253394 253398 0.999 - . logic_name=eponine scaffold_2 . biological_region 253422 253428 0.999 - . logic_name=eponine scaffold_2 . biological_region 253448 253455 0.999 + . logic_name=eponine scaffold_2 . biological_region 253477 253482 0.999 + . logic_name=eponine scaffold_2 . biological_region 254231 254232 0.999 + . logic_name=eponine scaffold_2 . biological_region 254291 254296 0.999 + . logic_name=eponine scaffold_2 . biological_region 254309 254316 0.999 - . logic_name=eponine scaffold_2 . biological_region 255082 255083 0.999 + . logic_name=eponine scaffold_2 . biological_region 255281 255285 0.999 - . logic_name=eponine scaffold_2 . biological_region 255297 255302 0.999 + . logic_name=eponine scaffold_2 . biological_region 255446 255447 0.999 - . logic_name=eponine scaffold_2 . repeat_region 256231 257412 . - . description=GypsyPi-1c_I-int scaffold_2 . biological_region 256396 256399 0.999 - . logic_name=eponine scaffold_2 . repeat_region 258295 261791 . - . description=Polinton-1_PI scaffold_2 . exon 249076 249304 . + . ID=Physo110464.6;Parent=Physo110464;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_2 ensembl protein_coding_gene 253155 254786 . - . ID=Physo110467;biotype=protein_coding;external_name=estExt_Genewise1.C_20313;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 253155 254786 . - . ID=Physo110467;Parent=Physo110467;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 253155 253583 . - . ID=Physo110467.5;Parent=Physo110467;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_2 . CDS 253221 253583 . - 0 ID=Physo110467;Parent=Physo110467;rank=4 scaffold_2 . CDS 253651 253820 . - 0 ID=Physo110467;Parent=Physo110467;rank=3 scaffold_2 . exon 253651 253820 . - . ID=Physo110467.4;Parent=Physo110467;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 253895 254059 . - 0 ID=Physo110467;Parent=Physo110467;rank=2 scaffold_2 . exon 253895 254059 . - . ID=Physo110467.3;Parent=Physo110467;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 254142 254601 . - 0 ID=Physo110467;Parent=Physo110467;rank=1 scaffold_2 . exon 254142 254604 . - . ID=Physo110467.2;Parent=Physo110467;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=2 scaffold_2 . exon 254679 254786 . - . ID=Physo110467.1;Parent=Physo110467;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . repeat_region 259383 259392 . ? . description=dust scaffold_2 . repeat_region 261975 262144 . ? . description=trf scaffold_2 . repeat_region 263927 263934 . ? . description=dust scaffold_2 . repeat_region 266579 266667 . ? . description=trf scaffold_2 . repeat_region 266583 266669 . ? . description=trf scaffold_2 . repeat_region 266785 266866 . ? . description=trf scaffold_2 . repeat_region 266800 266926 . ? . description=trf scaffold_2 . repeat_region 269751 270264 . - . description=Polinton-1_PI scaffold_2 . biological_region 272053 272055 0.999 + . logic_name=eponine scaffold_2 . biological_region 272973 272974 0.999 - . logic_name=eponine scaffold_2 . biological_region 273412 273416 0.999 - . logic_name=eponine scaffold_2 . biological_region 275523 275525 0.999 + . logic_name=eponine scaffold_2 . biological_region 275530 275533 0.999 - . logic_name=eponine scaffold_2 . biological_region 275585 275590 0.999 + . logic_name=eponine scaffold_2 . biological_region 275621 275625 0.999 - . logic_name=eponine scaffold_2 . biological_region 275644 275649 0.999 - . logic_name=eponine scaffold_2 . biological_region 275652 275656 0.999 - . logic_name=eponine scaffold_2 . biological_region 275718 275722 0.999 - . logic_name=eponine scaffold_2 . biological_region 276160 276163 0.999 + . logic_name=eponine scaffold_2 . biological_region 276673 276674 0.999 + . logic_name=eponine scaffold_2 . biological_region 277437 277438 0.999 - . logic_name=eponine scaffold_2 . biological_region 277986 277986 0.999 + . logic_name=eponine scaffold_2 . biological_region 278036 278039 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 275134 276333 . + . ID=Physo127474;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20050;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 275134 276333 . + . ID=Physo127474;Parent=Physo127474;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 275134 275276 . + 0 ID=Physo127474;Parent=Physo127474;rank=1 scaffold_2 . exon 275134 275276 . + . ID=Physo127474.1;Parent=Physo127474;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 275336 275663 . + 0 ID=Physo127474;Parent=Physo127474;rank=2 scaffold_2 . exon 275336 275663 . + . ID=Physo127474.2;Parent=Physo127474;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 275692 276333 . + 0 ID=Physo127474;Parent=Physo127474;rank=3 scaffold_2 . exon 275692 276333 . + . ID=Physo127474.3;Parent=Physo127474;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 276921 278127 . + . ID=Physo127475;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20051;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 276921 278127 . + . ID=Physo127475;Parent=Physo127475;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 276921 277554 . + 0 ID=Physo127475;Parent=Physo127475;rank=1 scaffold_2 . exon 276921 277554 . + . ID=Physo127475.1;Parent=Physo127475;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 277611 277720 . + 0 ID=Physo127475;Parent=Physo127475;rank=2 scaffold_2 . exon 277611 277720 . + . ID=Physo127475.2;Parent=Physo127475;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 277855 278127 . + 0 ID=Physo127475;Parent=Physo127475;rank=3 scaffold_2 . exon 277855 278127 . + . ID=Physo127475.3;Parent=Physo127475;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 278647 279744 . - . ID=Physo127476;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20052;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 278647 279744 . - . ID=Physo127476;Parent=Physo127476;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 278647 278988 . - 0 ID=Physo127476;Parent=Physo127476;rank=4 scaffold_2 . exon 278647 278988 . - . ID=Physo127476.4;Parent=Physo127476;constitutive=1;rank=4 scaffold_2 . CDS 279023 279043 . - 0 ID=Physo127476;Parent=Physo127476;rank=3 scaffold_2 . CDS 279082 279385 . - 0 ID=Physo127476;Parent=Physo127476;rank=2 scaffold_2 . CDS 279500 279744 . - 0 ID=Physo127476;Parent=Physo127476;rank=1 scaffold_2 . repeat_region 282258 282300 . ? . description=trf scaffold_2 . exon 279023 279043 . - . ID=Physo127476.3;Parent=Physo127476;constitutive=1;rank=3 scaffold_2 . exon 279082 279385 . - . ID=Physo127476.2;Parent=Physo127476;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . exon 279500 279744 . - . ID=Physo127476.1;Parent=Physo127476;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 281328 285221 . - . ID=Physo127477;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20053;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 281328 285221 . - . ID=Physo127477;Parent=Physo127477;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 281328 281333 . - 0 ID=Physo127477;Parent=Physo127477;rank=5 scaffold_2 . exon 281328 281333 . - . ID=Physo127477.5;Parent=Physo127477;constitutive=1;rank=5 scaffold_2 . CDS 281381 281601 . - 0 ID=Physo127477;Parent=Physo127477;rank=4 scaffold_2 . exon 281381 281601 . - . ID=Physo127477.4;Parent=Physo127477;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 281801 283873 . - 0 ID=Physo127477;Parent=Physo127477;rank=3 scaffold_2 . exon 281801 283873 . - . ID=Physo127477.3;Parent=Physo127477;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 284159 284184 . - 0 ID=Physo127477;Parent=Physo127477;rank=2 scaffold_2 . exon 284159 284184 . - . ID=Physo127477.2;Parent=Physo127477;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 284728 285221 . - 0 ID=Physo127477;Parent=Physo127477;rank=1 scaffold_2 . exon 284728 285221 . - . ID=Physo127477.1;Parent=Physo127477;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . repeat_region 296342 296712 . ? . description=dust scaffold_2 . biological_region 299338 299340 0.999 + . logic_name=eponine scaffold_2 . repeat_region 299707 299808 . ? . description=trf scaffold_2 . repeat_region 299783 299813 . ? . description=trf scaffold_2 . biological_region 300437 300442 0.999 - . logic_name=eponine scaffold_2 . biological_region 302182 302183 0.999 + . logic_name=eponine scaffold_2 . repeat_region 302764 302837 . ? . description=trf scaffold_2 . repeat_region 302781 302844 . ? . description=trf scaffold_2 . repeat_region 302842 302865 . ? . description=trf scaffold_2 ensembl protein_coding_gene 299987 303979 . + . ID=Physo127478;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20054;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 299987 303979 . + . ID=Physo127478;Parent=Physo127478;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 299987 300019 . + 0 ID=Physo127478;Parent=Physo127478;rank=1 scaffold_2 . exon 299987 300019 . + . ID=Physo127478.1;Parent=Physo127478;constitutive=1;rank=1 scaffold_2 . CDS 300087 300347 . + 0 ID=Physo127478;Parent=Physo127478;rank=2 scaffold_2 . exon 300087 300347 . + . ID=Physo127478.2;Parent=Physo127478;constitutive=1;rank=2 scaffold_2 . CDS 300387 300917 . + 0 ID=Physo127478;Parent=Physo127478;rank=3 scaffold_2 . exon 300387 300917 . + . ID=Physo127478.3;Parent=Physo127478;constitutive=1;rank=3 scaffold_2 . CDS 301032 301284 . + 0 ID=Physo127478;Parent=Physo127478;rank=4 scaffold_2 . exon 301032 301284 . + . ID=Physo127478.4;Parent=Physo127478;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 301532 303888 . + 0 ID=Physo127478;Parent=Physo127478;rank=5 scaffold_2 . exon 301532 303888 . + . ID=Physo127478.5;Parent=Physo127478;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 303947 303979 . + 0 ID=Physo127478;Parent=Physo127478;rank=6 scaffold_2 . exon 303947 303979 . + . ID=Physo127478.6;Parent=Physo127478;constitutive=1;rank=6 scaffold_2 ensembl protein_coding_gene 304677 308264 . - . ID=Physo127479;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20055;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 304677 308264 . - . ID=Physo127479;Parent=Physo127479;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 304677 305908 . - 0 ID=Physo127479;Parent=Physo127479;rank=4 scaffold_2 . exon 304677 305908 . - . ID=Physo127479.4;Parent=Physo127479;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 306047 307259 . - 0 ID=Physo127479;Parent=Physo127479;rank=3 scaffold_2 . exon 306047 307259 . - . ID=Physo127479.3;Parent=Physo127479;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 307281 308090 . - 0 ID=Physo127479;Parent=Physo127479;rank=2 scaffold_2 . exon 307281 308090 . - . ID=Physo127479.2;Parent=Physo127479;constitutive=1;rank=2 scaffold_2 . CDS 308145 308264 . - 0 ID=Physo127479;Parent=Physo127479;rank=1 scaffold_2 . exon 308145 308264 . - . ID=Physo127479.1;Parent=Physo127479;constitutive=1;rank=1 scaffold_2 . repeat_region 311589 311619 . ? . description=dust scaffold_2 . repeat_region 311798 311847 . ? . description=dust scaffold_2 . repeat_region 313733 313782 . ? . description=dust scaffold_2 . repeat_region 315286 315294 . ? . description=dust scaffold_2 . repeat_region 317845 318879 . ? . description=dust scaffold_2 ensembl protein_coding_gene 309280 311589 . - . ID=Physo127480;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20056;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 309280 311589 . - . ID=Physo127480;Parent=Physo127480;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 309280 309991 . - 0 ID=Physo127480;Parent=Physo127480;rank=3 scaffold_2 . exon 309280 309991 . - . ID=Physo127480.3;Parent=Physo127480;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 310182 310471 . - 0 ID=Physo127480;Parent=Physo127480;rank=2 scaffold_2 . exon 310182 310471 . - . ID=Physo127480.2;Parent=Physo127480;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 310552 311589 . - 0 ID=Physo127480;Parent=Physo127480;rank=1 scaffold_2 . exon 310552 311589 . - . ID=Physo127480.1;Parent=Physo127480;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 315725 316774 . + . ID=Physo127481;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20057;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 315725 316774 . + . ID=Physo127481;Parent=Physo127481;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 315725 316774 . + 0 ID=Physo127481;Parent=Physo127481;rank=1 scaffold_2 . exon 315725 316774 . + . ID=Physo127481.1;Parent=Physo127481;constitutive=1;rank=1 scaffold_2 . biological_region 319061 319066 0.999 - . logic_name=eponine scaffold_2 . repeat_region 321275 321327 . ? . description=trf scaffold_2 . repeat_region 321539 321621 . ? . description=trf scaffold_2 . biological_region 322857 322864 0.999 + . logic_name=eponine scaffold_2 . repeat_region 323463 323522 . ? . description=trf scaffold_2 . biological_region 326788 326792 0.999 + . logic_name=eponine scaffold_2 . repeat_region 327102 327134 . ? . description=trf scaffold_2 ensembl protein_coding_gene 319216 320045 . + . ID=Physo127482;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20058;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 319216 320045 . + . ID=Physo127482;Parent=Physo127482;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 319216 319299 . + 0 ID=Physo127482;Parent=Physo127482;rank=1 scaffold_2 . exon 319216 319299 . + . ID=Physo127482.1;Parent=Physo127482;constitutive=1;rank=1 scaffold_2 . CDS 319428 320045 . + 0 ID=Physo127482;Parent=Physo127482;rank=2 scaffold_2 . exon 319428 320045 . + . ID=Physo127482.2;Parent=Physo127482;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 322294 323043 . - . ID=Physo127483;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20059;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 322294 323043 . - . ID=Physo127483;Parent=Physo127483;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 322294 323043 . - 0 ID=Physo127483;Parent=Physo127483;rank=1 scaffold_2 . exon 322294 323043 . - . ID=Physo127483.1;Parent=Physo127483;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 326133 329495 . + . ID=Physo155305;biotype=protein_coding;external_name=C_scaffold_2000014;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 326133 329495 . + . ID=Physo155305;Parent=Physo155305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 326133 326401 . + 0 ID=Physo155305;Parent=Physo155305;rank=1 scaffold_2 . exon 326133 326401 . + . ID=Physo155305.1;Parent=Physo155305;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 326631 326956 . + 0 ID=Physo155305;Parent=Physo155305;rank=2 scaffold_2 . exon 326631 326956 . + . ID=Physo155305.2;Parent=Physo155305;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 327037 327158 . + 0 ID=Physo155305;Parent=Physo155305;rank=3 scaffold_2 . exon 327037 327158 . + . ID=Physo155305.3;Parent=Physo155305;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 327236 327317 . + 0 ID=Physo155305;Parent=Physo155305;rank=4 scaffold_2 . exon 327236 327317 . + . ID=Physo155305.4;Parent=Physo155305;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 327382 327470 . + 0 ID=Physo155305;Parent=Physo155305;rank=5 scaffold_2 . exon 327382 327470 . + . ID=Physo155305.5;Parent=Physo155305;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 327544 327584 . + 0 ID=Physo155305;Parent=Physo155305;rank=6 scaffold_2 . exon 327544 327584 . + . ID=Physo155305.6;Parent=Physo155305;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_2 . CDS 327665 327766 . + 0 ID=Physo155305;Parent=Physo155305;rank=7 scaffold_2 . exon 327665 327766 . + . ID=Physo155305.7;Parent=Physo155305;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_2 . CDS 327832 328292 . + 0 ID=Physo155305;Parent=Physo155305;rank=8 scaffold_2 . exon 327832 328292 . + . ID=Physo155305.8;Parent=Physo155305;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_2 . CDS 328573 328832 . + 0 ID=Physo155305;Parent=Physo155305;rank=9 scaffold_2 . exon 328573 328832 . + . ID=Physo155305.9;Parent=Physo155305;constitutive=1;ensembl_phase=1;rank=9 scaffold_2 . CDS 328902 329066 . + 0 ID=Physo155305;Parent=Physo155305;rank=10 scaffold_2 . CDS 329137 329241 . + 0 ID=Physo155305;Parent=Physo155305;rank=11 scaffold_2 . CDS 329328 329495 . + 0 ID=Physo155305;Parent=Physo155305;rank=12 scaffold_2 . repeat_region 334111 334170 . ? . description=dust scaffold_2 ensembl protein_coding_gene 329800 330471 . + . ID=Physo110157;biotype=protein_coding;external_name=estExt_Genewise1.C_20003;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 329800 330471 . + . ID=Physo110157;Parent=Physo110157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 329800 329846 . + . ID=Physo110157.1;Parent=Physo110157;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . exon 329907 330471 . + . ID=Physo110157.2;Parent=Physo110157;constitutive=1;ensembl_phase=-1;rank=2 scaffold_2 . CDS 329908 330471 . + 0 ID=Physo110157;Parent=Physo110157;rank=1 scaffold_2 ensembl protein_coding_gene 330613 334510 . - . ID=Physo127485;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20061;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 330613 334510 . - . ID=Physo127485;Parent=Physo127485;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 330613 330750 . - 0 ID=Physo127485;Parent=Physo127485;rank=3 scaffold_2 . exon 330613 330750 . - . ID=Physo127485.3;Parent=Physo127485;constitutive=1;rank=3 scaffold_2 . CDS 330793 332681 . - 0 ID=Physo127485;Parent=Physo127485;rank=2 scaffold_2 . exon 330793 332681 . - . ID=Physo127485.2;Parent=Physo127485;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 333043 334510 . - 0 ID=Physo127485;Parent=Physo127485;rank=1 scaffold_2 . exon 333043 334510 . - . ID=Physo127485.1;Parent=Physo127485;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 334801 337473 . - . ID=Physo127486;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20062;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 334801 337473 . - . ID=Physo127486;Parent=Physo127486;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 334801 337473 . - 0 ID=Physo127486;Parent=Physo127486;rank=1 scaffold_2 . exon 334801 337473 . - . ID=Physo127486.1;Parent=Physo127486;constitutive=1;rank=1 scaffold_2 . exon 328902 329066 . + . ID=Physo155305.10;Parent=Physo155305;constitutive=1;rank=10 scaffold_2 . exon 329137 329241 . + . ID=Physo155305.11;Parent=Physo155305;constitutive=1;rank=11 scaffold_2 . exon 329328 329495 . + . ID=Physo155305.12;Parent=Physo155305;constitutive=1;rank=12 scaffold_2 . biological_region 339760 339764 0.999 - . logic_name=eponine scaffold_2 . biological_region 340253 340258 0.999 + . logic_name=eponine scaffold_2 . repeat_region 343114 343150 . ? . description=trf scaffold_2 . repeat_region 343115 343154 . ? . description=trf scaffold_2 . biological_region 343309 343309 0.999 + . logic_name=eponine scaffold_2 . biological_region 343347 343347 0.999 + . logic_name=eponine scaffold_2 . biological_region 343375 343379 0.999 - . logic_name=eponine scaffold_2 . biological_region 343431 343436 0.999 + . logic_name=eponine scaffold_2 . biological_region 343440 343447 0.999 - . logic_name=eponine scaffold_2 . biological_region 343486 343488 0.999 + . logic_name=eponine scaffold_2 . biological_region 343496 343502 0.999 + . logic_name=eponine scaffold_2 . biological_region 343547 343554 0.999 + . logic_name=eponine scaffold_2 . biological_region 343553 343563 0.999 - . logic_name=eponine scaffold_2 . repeat_region 344019 344046 . ? . description=trf scaffold_2 . biological_region 348356 348357 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 339109 340969 . - . ID=Physo127487;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20063;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 339109 340969 . - . ID=Physo127487;Parent=Physo127487;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 339109 339234 . - . ID=Physo127487.7;Parent=Physo127487;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=7 scaffold_2 . CDS 339176 339234 . - 0 ID=Physo127487;Parent=Physo127487;rank=7 scaffold_2 . CDS 339317 339340 . - 0 ID=Physo127487;Parent=Physo127487;rank=6 scaffold_2 . exon 339317 339340 . - . ID=Physo127487.6;Parent=Physo127487;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 339543 339757 . - 0 ID=Physo127487;Parent=Physo127487;rank=5 scaffold_2 . exon 339543 339757 . - . ID=Physo127487.5;Parent=Physo127487;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 339827 340054 . - 0 ID=Physo127487;Parent=Physo127487;rank=4 scaffold_2 . exon 339827 340054 . - . ID=Physo127487.4;Parent=Physo127487;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_2 . CDS 340085 340224 . - 0 ID=Physo127487;Parent=Physo127487;rank=3 scaffold_2 . exon 340085 340224 . - . ID=Physo127487.3;Parent=Physo127487;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 340269 340387 . - 0 ID=Physo127487;Parent=Physo127487;rank=2 scaffold_2 . exon 340269 340387 . - . ID=Physo127487.2;Parent=Physo127487;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 340966 340969 . - 0 ID=Physo127487;Parent=Physo127487;rank=1 scaffold_2 . exon 340966 340969 . - . ID=Physo127487.1;Parent=Physo127487;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 343258 344611 . + . ID=Physo127488;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20064;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 343258 344611 . + . ID=Physo127488;Parent=Physo127488;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 343258 343701 . + 0 ID=Physo127488;Parent=Physo127488;rank=1 scaffold_2 . exon 343258 343701 . + . ID=Physo127488.1;Parent=Physo127488;constitutive=1;rank=1 scaffold_2 . CDS 343763 344611 . + 0 ID=Physo127488;Parent=Physo127488;rank=2 scaffold_2 . exon 343763 344611 . + . ID=Physo127488.2;Parent=Physo127488;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 346962 347840 . - . ID=Physo127489;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20065;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 346962 347840 . - . ID=Physo127489;Parent=Physo127489;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 346962 347111 . - 0 ID=Physo127489;Parent=Physo127489;rank=4 scaffold_2 . exon 346962 347111 . - . ID=Physo127489.4;Parent=Physo127489;constitutive=1;rank=4 scaffold_2 . CDS 347176 347310 . - 0 ID=Physo127489;Parent=Physo127489;rank=3 scaffold_2 . exon 347176 347310 . - . ID=Physo127489.3;Parent=Physo127489;constitutive=1;rank=3 scaffold_2 . CDS 347381 347452 . - 0 ID=Physo127489;Parent=Physo127489;rank=2 scaffold_2 . exon 347381 347452 . - . ID=Physo127489.2;Parent=Physo127489;constitutive=1;rank=2 scaffold_2 . CDS 347526 347840 . - 0 ID=Physo127489;Parent=Physo127489;rank=1 scaffold_2 . exon 347526 347840 . - . ID=Physo127489.1;Parent=Physo127489;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 348005 350311 . + . ID=Physo127490;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20066;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 348005 350311 . + . ID=Physo127490;Parent=Physo127490;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 348005 350311 . + 0 ID=Physo127490;Parent=Physo127490;rank=1 scaffold_2 . exon 348005 350311 . + . ID=Physo127490.1;Parent=Physo127490;constitutive=1;rank=1 scaffold_2 . repeat_region 353774 353902 . + . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 354502 356148 . + . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 357300 357848 . + . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 358448 360093 . + . description=GypsyPi-1c_I-int scaffold_2 ensembl protein_coding_gene 350435 352460 . - . ID=Physo127491;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20067;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 350435 352460 . - . ID=Physo127491;Parent=Physo127491;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 350435 350842 . - 0 ID=Physo127491;Parent=Physo127491;rank=4 scaffold_2 . exon 350435 350842 . - . ID=Physo127491.4;Parent=Physo127491;constitutive=1;rank=4 scaffold_2 . CDS 350924 351633 . - 0 ID=Physo127491;Parent=Physo127491;rank=3 scaffold_2 . exon 350924 351633 . - . ID=Physo127491.3;Parent=Physo127491;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 351706 351937 . - 0 ID=Physo127491;Parent=Physo127491;rank=2 scaffold_2 . exon 351706 351937 . - . ID=Physo127491.2;Parent=Physo127491;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 352023 352460 . - 0 ID=Physo127491;Parent=Physo127491;rank=1 scaffold_2 . exon 352023 352460 . - . ID=Physo127491.1;Parent=Physo127491;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 353788 360141 . + . ID=Physo127492;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20068;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 353788 360141 . + . ID=Physo127492;Parent=Physo127492;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 353788 356100 . + 0 ID=Physo127492;Parent=Physo127492;rank=1 scaffold_2 . exon 353788 356100 . + . ID=Physo127492.1;Parent=Physo127492;constitutive=1;rank=1 scaffold_2 . CDS 356298 357174 . + 0 ID=Physo127492;Parent=Physo127492;rank=2 scaffold_2 . exon 356298 357174 . + . ID=Physo127492.2;Parent=Physo127492;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 357450 359037 . + 0 ID=Physo127492;Parent=Physo127492;rank=3 scaffold_2 . exon 357450 359037 . + . ID=Physo127492.3;Parent=Physo127492;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 359058 360141 . + 0 ID=Physo127492;Parent=Physo127492;rank=4 scaffold_2 . repeat_region 360794 361209 . + . description=Polinton-1_PI scaffold_2 . repeat_region 361395 361446 . + . description=Polinton-1_PI scaffold_2 . repeat_region 361447 361593 . - . description=Polinton-1_PI scaffold_2 . repeat_region 361814 361821 . ? . description=dust scaffold_2 . repeat_region 362888 362896 . ? . description=dust scaffold_2 . biological_region 363414 363423 0.999 - . logic_name=eponine scaffold_2 . biological_region 363431 363431 0.999 + . logic_name=eponine scaffold_2 . biological_region 363442 363443 0.999 - . logic_name=eponine scaffold_2 . biological_region 363462 363468 0.999 - . logic_name=eponine scaffold_2 . biological_region 363546 363547 0.999 - . logic_name=eponine scaffold_2 . biological_region 363550 363558 0.999 - . logic_name=eponine scaffold_2 . biological_region 364170 364176 0.999 - . logic_name=eponine scaffold_2 . biological_region 365455 365457 0.999 + . logic_name=eponine scaffold_2 . biological_region 367974 367977 0.999 - . logic_name=eponine scaffold_2 . exon 359058 360141 . + . ID=Physo127492.4;Parent=Physo127492;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 ensembl protein_coding_gene 363259 364944 . + . ID=Physo127493;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20069;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 363259 364944 . + . ID=Physo127493;Parent=Physo127493;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 363259 363648 . + 0 ID=Physo127493;Parent=Physo127493;rank=1 scaffold_2 . exon 363259 363648 . + . ID=Physo127493.1;Parent=Physo127493;constitutive=1;rank=1 scaffold_2 . CDS 363679 364944 . + 0 ID=Physo127493;Parent=Physo127493;rank=2 scaffold_2 . exon 363679 364944 . + . ID=Physo127493.2;Parent=Physo127493;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 365406 370057 . - . ID=Physo127494;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20070;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 365406 370057 . - . ID=Physo127494;Parent=Physo127494;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 365406 365668 . - 0 ID=Physo127494;Parent=Physo127494;rank=4 scaffold_2 . exon 365406 365668 . - . ID=Physo127494.4;Parent=Physo127494;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 365747 366128 . - 0 ID=Physo127494;Parent=Physo127494;rank=3 scaffold_2 . exon 365747 366128 . - . ID=Physo127494.3;Parent=Physo127494;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 366327 368923 . - 0 ID=Physo127494;Parent=Physo127494;rank=2 scaffold_2 . exon 366327 368923 . - . ID=Physo127494.2;Parent=Physo127494;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 369085 370057 . - 0 ID=Physo127494;Parent=Physo127494;rank=1 scaffold_2 . repeat_region 368525 369073 . - . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 373763 376139 . - . description=GypsyPi-1c_I-int scaffold_2 . exon 369085 370057 . - . ID=Physo127494.1;Parent=Physo127494;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 371686 373210 . + . ID=Physo127495;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20071;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 371686 373210 . + . ID=Physo127495;Parent=Physo127495;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 371686 372149 . + 0 ID=Physo127495;Parent=Physo127495;rank=1 scaffold_2 . exon 371686 372149 . + . ID=Physo127495.1;Parent=Physo127495;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 372216 372339 . + 0 ID=Physo127495;Parent=Physo127495;rank=2 scaffold_2 . exon 372216 372339 . + . ID=Physo127495.2;Parent=Physo127495;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 372697 372728 . + 0 ID=Physo127495;Parent=Physo127495;rank=3 scaffold_2 . exon 372697 372728 . + . ID=Physo127495.3;Parent=Physo127495;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 372895 373210 . + 0 ID=Physo127495;Parent=Physo127495;rank=4 scaffold_2 . exon 372895 373210 . + . ID=Physo127495.4;Parent=Physo127495;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 ensembl protein_coding_gene 373623 376837 . - . ID=Physo127496;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20072;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 373623 376837 . - . ID=Physo127496;Parent=Physo127496;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 373623 374291 . - 0 ID=Physo127496;Parent=Physo127496;rank=6 scaffold_2 . exon 373623 374291 . - . ID=Physo127496.6;Parent=Physo127496;constitutive=1;rank=6 scaffold_2 . CDS 374361 374548 . - 0 ID=Physo127496;Parent=Physo127496;rank=5 scaffold_2 . exon 374361 374548 . - . ID=Physo127496.5;Parent=Physo127496;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 374569 375040 . - 0 ID=Physo127496;Parent=Physo127496;rank=4 scaffold_2 . exon 374569 375040 . - . ID=Physo127496.4;Parent=Physo127496;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 375134 376368 . - 0 ID=Physo127496;Parent=Physo127496;rank=3 scaffold_2 . exon 375134 376368 . - . ID=Physo127496.3;Parent=Physo127496;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 376553 376745 . - 0 ID=Physo127496;Parent=Physo127496;rank=2 scaffold_2 . exon 376553 376745 . - . ID=Physo127496.2;Parent=Physo127496;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 376802 376837 . - 0 ID=Physo127496;Parent=Physo127496;rank=1 scaffold_2 . exon 376802 376837 . - . ID=Physo127496.1;Parent=Physo127496;constitutive=1;rank=1 scaffold_2 . biological_region 384435 384436 0.999 + . logic_name=eponine scaffold_2 . repeat_region 386168 386175 . ? . description=dust scaffold_2 . biological_region 386344 386345 0.999 + . logic_name=eponine scaffold_2 . biological_region 386441 386444 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 385721 386158 . + . ID=Physo127497;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20073;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 385721 386158 . + . ID=Physo127497;Parent=Physo127497;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 385721 386158 . + 0 ID=Physo127497;Parent=Physo127497;rank=1 scaffold_2 . exon 385721 386158 . + . ID=Physo127497.1;Parent=Physo127497;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 386917 387420 . - . ID=Physo127498;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20074;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 386917 387420 . - . ID=Physo127498;Parent=Physo127498;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 386917 387129 . - 0 ID=Physo127498;Parent=Physo127498;rank=2 scaffold_2 . exon 386917 387129 . - . ID=Physo127498.2;Parent=Physo127498;constitutive=1;rank=2 scaffold_2 . CDS 387157 387420 . - 0 ID=Physo127498;Parent=Physo127498;rank=1 scaffold_2 . exon 387157 387420 . - . ID=Physo127498.1;Parent=Physo127498;constitutive=1;rank=1 scaffold_2 . repeat_region 392853 392896 . ? . description=trf scaffold_2 . repeat_region 397288 397326 . ? . description=trf scaffold_2 . repeat_region 397348 397367 . ? . description=trf scaffold_2 . repeat_region 398227 398272 . ? . description=trf scaffold_2 . repeat_region 398228 398291 . ? . description=trf scaffold_2 . repeat_region 398228 398439 . + . description=(CTG)n scaffold_2 ensembl protein_coding_gene 395593 396316 . - . ID=Physo110169;biotype=protein_coding;external_name=estExt_Genewise1.C_20015;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 395593 396316 . - . ID=Physo110169;Parent=Physo110169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 395593 395893 . - . ID=Physo110169.3;Parent=Physo110169;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_2 . CDS 395734 395893 . - 0 ID=Physo110169;Parent=Physo110169;rank=3 scaffold_2 . CDS 395977 396096 . - 0 ID=Physo110169;Parent=Physo110169;rank=2 scaffold_2 . exon 395977 396096 . - . ID=Physo110169.2;Parent=Physo110169;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 396181 396314 . - 0 ID=Physo110169;Parent=Physo110169;rank=1 scaffold_2 . exon 396181 396316 . - . ID=Physo110169.1;Parent=Physo110169;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 392886 393775 . - . ID=Physo127499;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20075;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 392886 393775 . - . ID=Physo127499;Parent=Physo127499;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 392886 393118 . - 0 ID=Physo127499;Parent=Physo127499;rank=3 scaffold_2 . exon 392886 393118 . - . ID=Physo127499.3;Parent=Physo127499;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 393476 393583 . - 0 ID=Physo127499;Parent=Physo127499;rank=2 scaffold_2 . exon 393476 393583 . - . ID=Physo127499.2;Parent=Physo127499;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 393763 393775 . - 0 ID=Physo127499;Parent=Physo127499;rank=1 scaffold_2 . exon 393763 393775 . - . ID=Physo127499.1;Parent=Physo127499;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 394111 395175 . + . ID=Physo127500;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20076;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 394111 395175 . + . ID=Physo127500;Parent=Physo127500;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 394111 395175 . + 0 ID=Physo127500;Parent=Physo127500;rank=1 scaffold_2 . exon 394111 395175 . + . ID=Physo127500.1;Parent=Physo127500;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 396544 400050 . - . ID=Physo127502;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20078;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 396544 400050 . - . ID=Physo127502;Parent=Physo127502;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 396544 399015 . - 0 ID=Physo127502;Parent=Physo127502;rank=3 scaffold_2 . exon 396544 399015 . - . ID=Physo127502.3;Parent=Physo127502;constitutive=1;rank=3 scaffold_2 . CDS 399119 399208 . - 0 ID=Physo127502;Parent=Physo127502;rank=2 scaffold_2 . CDS 399274 400050 . - 0 ID=Physo127502;Parent=Physo127502;rank=1 scaffold_2 . repeat_region 398368 398468 . + . description=(TTG)n scaffold_2 . repeat_region 398369 398430 . ? . description=dust scaffold_2 . biological_region 399570 399571 0.999 + . logic_name=eponine scaffold_2 . biological_region 399669 399672 0.999 + . logic_name=eponine scaffold_2 . biological_region 399714 399722 0.999 - . logic_name=eponine scaffold_2 . biological_region 399768 399776 0.999 + . logic_name=eponine scaffold_2 . biological_region 399777 399777 0.999 - . logic_name=eponine scaffold_2 . biological_region 399831 399835 0.999 - . logic_name=eponine scaffold_2 . repeat_region 399894 399913 . ? . description=dust scaffold_2 . biological_region 399918 399921 0.999 - . logic_name=eponine scaffold_2 . repeat_region 399965 399987 . ? . description=dust scaffold_2 . biological_region 401082 401085 0.999 - . logic_name=eponine scaffold_2 . biological_region 401661 401663 0.999 + . logic_name=eponine scaffold_2 . biological_region 403275 403284 0.999 - . logic_name=eponine scaffold_2 . repeat_region 403542 403726 . - . description=Polinton-1_PI scaffold_2 . repeat_region 403742 403812 . - . description=Polinton-1_PI scaffold_2 . repeat_region 403862 404159 . + . description=Polinton-1_PI scaffold_2 . repeat_region 404310 404343 . + . description=Polinton-1_PI scaffold_2 . repeat_region 405435 405735 . + . description=Polinton-1_PI scaffold_2 . repeat_region 405692 405699 . ? . description=dust scaffold_2 . repeat_region 405718 408924 . + . description=Polinton-1_PI scaffold_2 . exon 399119 399208 . - . ID=Physo127502.2;Parent=Physo127502;constitutive=1;rank=2 scaffold_2 . exon 399274 400050 . - . ID=Physo127502.1;Parent=Physo127502;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 400256 403500 . + . ID=Physo127503;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20079;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 400256 403500 . + . ID=Physo127503;Parent=Physo127503;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 400256 400287 . + 0 ID=Physo127503;Parent=Physo127503;rank=1 scaffold_2 . exon 400256 400287 . + . ID=Physo127503.1;Parent=Physo127503;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 400389 400800 . + 0 ID=Physo127503;Parent=Physo127503;rank=2 scaffold_2 . exon 400389 400800 . + . ID=Physo127503.2;Parent=Physo127503;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 400893 401069 . + 0 ID=Physo127503;Parent=Physo127503;rank=3 scaffold_2 . exon 400893 401069 . + . ID=Physo127503.3;Parent=Physo127503;constitutive=1;rank=3 scaffold_2 . CDS 401095 401150 . + 0 ID=Physo127503;Parent=Physo127503;rank=4 scaffold_2 . exon 401095 401150 . + . ID=Physo127503.4;Parent=Physo127503;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 401279 401358 . + 0 ID=Physo127503;Parent=Physo127503;rank=5 scaffold_2 . exon 401279 401358 . + . ID=Physo127503.5;Parent=Physo127503;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 401442 402106 . + 0 ID=Physo127503;Parent=Physo127503;rank=6 scaffold_2 . exon 401442 402106 . + . ID=Physo127503.6;Parent=Physo127503;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 402364 402378 . + 0 ID=Physo127503;Parent=Physo127503;rank=7 scaffold_2 . exon 402364 402378 . + . ID=Physo127503.7;Parent=Physo127503;constitutive=1;rank=7 scaffold_2 . CDS 402796 402915 . + 0 ID=Physo127503;Parent=Physo127503;rank=8 scaffold_2 . exon 402796 402915 . + . ID=Physo127503.8;Parent=Physo127503;constitutive=1;rank=8 scaffold_2 . CDS 403003 403272 . + 0 ID=Physo127503;Parent=Physo127503;rank=9 scaffold_2 . exon 403003 403272 . + . ID=Physo127503.9;Parent=Physo127503;constitutive=1;rank=9 scaffold_2 . CDS 403348 403500 . + 0 ID=Physo127503;Parent=Physo127503;rank=10 scaffold_2 . exon 403348 403500 . + . ID=Physo127503.10;Parent=Physo127503;constitutive=1;rank=10 scaffold_2 ensembl protein_coding_gene 403979 407822 . + . ID=Physo127504;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20080;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 403979 407822 . + . ID=Physo127504;Parent=Physo127504;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 403979 404042 . + . ID=Physo127504.1;Parent=Physo127504;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 403995 404042 . + 0 ID=Physo127504;Parent=Physo127504;rank=1 scaffold_2 . CDS 404139 404541 . + 0 ID=Physo127504;Parent=Physo127504;rank=2 scaffold_2 . exon 404139 404541 . + . ID=Physo127504.2;Parent=Physo127504;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 404614 405104 . + 0 ID=Physo127504;Parent=Physo127504;rank=3 scaffold_2 . exon 404614 405104 . + . ID=Physo127504.3;Parent=Physo127504;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 405161 405296 . + 0 ID=Physo127504;Parent=Physo127504;rank=4 scaffold_2 . exon 405161 405296 . + . ID=Physo127504.4;Parent=Physo127504;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 405954 406546 . + 0 ID=Physo127504;Parent=Physo127504;rank=5 scaffold_2 . exon 405954 406546 . + . ID=Physo127504.5;Parent=Physo127504;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 406573 407118 . + 0 ID=Physo127504;Parent=Physo127504;rank=6 scaffold_2 . exon 406573 407118 . + . ID=Physo127504.6;Parent=Physo127504;constitutive=1;rank=6 scaffold_2 . CDS 407139 407822 . + 0 ID=Physo127504;Parent=Physo127504;rank=7 scaffold_2 . exon 407139 407822 . + . ID=Physo127504.7;Parent=Physo127504;constitutive=1;rank=7 scaffold_2 . repeat_region 416801 417001 . ? . description=trf scaffold_2 . repeat_region 417272 419810 . + . description=Polinton-1_PI scaffold_2 . repeat_region 420342 423075 . + . description=Polinton-1_PI scaffold_2 . repeat_region 420376 420383 . ? . description=dust scaffold_2 . repeat_region 422473 422481 . ? . description=dust scaffold_2 . repeat_region 423533 423555 . ? . description=dust scaffold_2 . biological_region 424186 424189 0.999 - . logic_name=eponine scaffold_2 . biological_region 424586 424587 0.999 + . logic_name=eponine scaffold_2 . biological_region 424593 424595 0.999 - . logic_name=eponine scaffold_2 . biological_region 425421 425426 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 423047 423825 . - . ID=Physo127505;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20081;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 423047 423825 . - . ID=Physo127505;Parent=Physo127505;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 423047 423452 . - . ID=Physo127505.3;Parent=Physo127505;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_2 . CDS 423138 423452 . - 0 ID=Physo127505;Parent=Physo127505;rank=3 scaffold_2 . CDS 423556 423694 . - 0 ID=Physo127505;Parent=Physo127505;rank=2 scaffold_2 . exon 423556 423694 . - . ID=Physo127505.2;Parent=Physo127505;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 423782 423825 . - 0 ID=Physo127505;Parent=Physo127505;rank=1 scaffold_2 . exon 423782 423825 . - . ID=Physo127505.1;Parent=Physo127505;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 424308 424925 . + . ID=Physo127506;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20082;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 424308 424925 . + . ID=Physo127506;Parent=Physo127506;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 424308 424925 . + 0 ID=Physo127506;Parent=Physo127506;rank=1 scaffold_2 . exon 424308 424925 . + . ID=Physo127506.1;Parent=Physo127506;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 425105 429126 . - . ID=Physo127507;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20083;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 425105 429126 . - . ID=Physo127507;Parent=Physo127507;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 425105 429126 . - . ID=Physo127507.1;Parent=Physo127507;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_2 . CDS 425215 429126 . - 0 ID=Physo127507;Parent=Physo127507;rank=1 scaffold_2 . repeat_region 429616 429665 . ? . description=trf scaffold_2 . repeat_region 432424 432520 . ? . description=trf scaffold_2 . repeat_region 432425 432521 . ? . description=trf scaffold_2 ensembl protein_coding_gene 433426 434792 . + . ID=Physo108178;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20010;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 433426 434792 . + . ID=Physo108178;Parent=Physo108178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 433426 434760 . + 0 ID=Physo108178;Parent=Physo108178;rank=1 scaffold_2 . exon 433426 434792 . + . ID=Physo108178.1;Parent=Physo108178;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_2 . biological_region 444182 444188 0.999 + . logic_name=eponine scaffold_2 . biological_region 444297 444298 0.999 - . logic_name=eponine scaffold_2 . biological_region 446301 446301 0.999 - . logic_name=eponine scaffold_2 . biological_region 446517 446519 0.999 + . logic_name=eponine scaffold_2 . biological_region 446583 446587 0.999 - . logic_name=eponine scaffold_2 . biological_region 446639 446645 0.999 - . logic_name=eponine scaffold_2 . biological_region 446696 446698 0.999 + . logic_name=eponine scaffold_2 . biological_region 446961 446971 0.999 + . logic_name=eponine scaffold_2 . biological_region 447126 447131 0.999 - . logic_name=eponine scaffold_2 . biological_region 447998 447998 0.999 + . logic_name=eponine scaffold_2 . biological_region 448077 448081 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 445820 447355 . - . ID=Physo108179;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20011;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 445820 447355 . - . ID=Physo108179;Parent=Physo108179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 445820 447355 . - 0 ID=Physo108179;Parent=Physo108179;rank=1 scaffold_2 . exon 445820 447355 . - . ID=Physo108179.1;Parent=Physo108179;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 439919 440466 . + . ID=Physo127509;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20085;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 439919 440466 . + . ID=Physo127509;Parent=Physo127509;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 439919 439978 . + 0 ID=Physo127509;Parent=Physo127509;rank=1 scaffold_2 . exon 439919 439978 . + . ID=Physo127509.1;Parent=Physo127509;constitutive=1;rank=1 scaffold_2 . CDS 440053 440295 . + 0 ID=Physo127509;Parent=Physo127509;rank=2 scaffold_2 . exon 440053 440295 . + . ID=Physo127509.2;Parent=Physo127509;constitutive=1;rank=2 scaffold_2 . CDS 440368 440466 . + 0 ID=Physo127509;Parent=Physo127509;rank=3 scaffold_2 . exon 440368 440466 . + . ID=Physo127509.3;Parent=Physo127509;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 440610 445664 . + . ID=Physo127510;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20086;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 440610 445664 . + . ID=Physo127510;Parent=Physo127510;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 440610 440767 . + . ID=Physo127510.1;Parent=Physo127510;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 440621 440767 . + 0 ID=Physo127510;Parent=Physo127510;rank=1 scaffold_2 . CDS 440859 441038 . + 0 ID=Physo127510;Parent=Physo127510;rank=2 scaffold_2 . exon 440859 441038 . + . ID=Physo127510.2;Parent=Physo127510;constitutive=1;rank=2 scaffold_2 . CDS 441334 445582 . + 0 ID=Physo127510;Parent=Physo127510;rank=3 scaffold_2 . exon 441334 445582 . + . ID=Physo127510.3;Parent=Physo127510;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 445639 445664 . + 0 ID=Physo127510;Parent=Physo127510;rank=4 scaffold_2 . exon 445639 445664 . + . ID=Physo127510.4;Parent=Physo127510;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 447986 449012 . - . ID=Physo127512;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20088;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 447986 449012 . - . ID=Physo127512;Parent=Physo127512;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 447986 448726 . - 0 ID=Physo127512;Parent=Physo127512;rank=2 scaffold_2 . exon 447986 448726 . - . ID=Physo127512.2;Parent=Physo127512;constitutive=1;rank=2 scaffold_2 . CDS 448791 449012 . - 0 ID=Physo127512;Parent=Physo127512;rank=1 scaffold_2 . repeat_region 451722 451729 . ? . description=dust scaffold_2 . repeat_region 454180 454190 . ? . description=dust scaffold_2 . repeat_region 454238 454269 . ? . description=trf scaffold_2 ensembl protein_coding_gene 451932 454223 . + . ID=Physo108180;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20012;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 451932 454223 . + . ID=Physo108180;Parent=Physo108180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 451932 452975 . + . ID=Physo108180.1;Parent=Physo108180;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 451947 452975 . + 0 ID=Physo108180;Parent=Physo108180;rank=1 scaffold_2 . CDS 453047 453250 . + 0 ID=Physo108180;Parent=Physo108180;rank=2 scaffold_2 . exon 453047 453250 . + . ID=Physo108180.2;Parent=Physo108180;constitutive=1;rank=2 scaffold_2 . CDS 453332 453634 . + 0 ID=Physo108180;Parent=Physo108180;rank=3 scaffold_2 . exon 453332 453634 . + . ID=Physo108180.3;Parent=Physo108180;constitutive=1;rank=3 scaffold_2 . CDS 453706 453789 . + 0 ID=Physo108180;Parent=Physo108180;rank=4 scaffold_2 . exon 453706 453789 . + . ID=Physo108180.4;Parent=Physo108180;constitutive=1;rank=4 scaffold_2 . CDS 453865 454104 . + 0 ID=Physo108180;Parent=Physo108180;rank=5 scaffold_2 . exon 453865 454223 . + . ID=Physo108180.5;Parent=Physo108180;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_2 . exon 448791 449012 . - . ID=Physo127512.1;Parent=Physo127512;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 449232 449738 . + . ID=Physo127513;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20089;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 449232 449738 . + . ID=Physo127513;Parent=Physo127513;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 449232 449738 . + 0 ID=Physo127513;Parent=Physo127513;rank=1 scaffold_2 . exon 449232 449738 . + . ID=Physo127513.1;Parent=Physo127513;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 449988 451709 . - . ID=Physo127514;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20090;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 449988 451709 . - . ID=Physo127514;Parent=Physo127514;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 449988 450605 . - 0 ID=Physo127514;Parent=Physo127514;rank=2 scaffold_2 . exon 449988 450605 . - . ID=Physo127514.2;Parent=Physo127514;constitutive=1;rank=2 scaffold_2 . CDS 450792 451709 . - 0 ID=Physo127514;Parent=Physo127514;rank=1 scaffold_2 . exon 450792 451709 . - . ID=Physo127514.1;Parent=Physo127514;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 454419 455578 . + . ID=Physo155311;biotype=protein_coding;external_name=C_scaffold_2000020;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 454419 455578 . + . ID=Physo155311;Parent=Physo155311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 454419 454648 . + 0 ID=Physo155311;Parent=Physo155311;rank=1 scaffold_2 . exon 454419 454648 . + . ID=Physo155311.1;Parent=Physo155311;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 454714 454814 . + 0 ID=Physo155311;Parent=Physo155311;rank=2 scaffold_2 . exon 454714 454814 . + . ID=Physo155311.2;Parent=Physo155311;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 454884 454897 . + 0 ID=Physo155311;Parent=Physo155311;rank=3 scaffold_2 . exon 454884 454897 . + . ID=Physo155311.3;Parent=Physo155311;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 454949 455080 . + 0 ID=Physo155311;Parent=Physo155311;rank=4 scaffold_2 . exon 454949 455080 . + . ID=Physo155311.4;Parent=Physo155311;constitutive=1;rank=4 scaffold_2 . CDS 455145 455373 . + 0 ID=Physo155311;Parent=Physo155311;rank=5 scaffold_2 . exon 455145 455373 . + . ID=Physo155311.5;Parent=Physo155311;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_2 . CDS 455451 455578 . + 0 ID=Physo155311;Parent=Physo155311;rank=6 scaffold_2 . exon 455451 455578 . + . ID=Physo155311.6;Parent=Physo155311;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 ensembl protein_coding_gene 456325 458657 . - . ID=Physo155312;biotype=protein_coding;external_name=C_scaffold_2000021;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 456325 458657 . - . ID=Physo155312;Parent=Physo155312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 456325 457542 . - 0 ID=Physo155312;Parent=Physo155312;rank=3 scaffold_2 . exon 456325 457542 . - . ID=Physo155312.3;Parent=Physo155312;constitutive=1;rank=3 scaffold_2 . CDS 457663 458362 . - 0 ID=Physo155312;Parent=Physo155312;rank=2 scaffold_2 . exon 457663 458362 . - . ID=Physo155312.2;Parent=Physo155312;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 458455 458657 . - 0 ID=Physo155312;Parent=Physo155312;rank=1 scaffold_2 . biological_region 459059 459060 0.999 + . logic_name=eponine scaffold_2 . biological_region 459141 459142 0.999 - . logic_name=eponine scaffold_2 . biological_region 459208 459208 0.999 - . logic_name=eponine scaffold_2 . biological_region 463482 463485 0.999 + . logic_name=eponine scaffold_2 . biological_region 463485 463486 0.999 - . logic_name=eponine scaffold_2 . biological_region 463501 463508 0.999 + . logic_name=eponine scaffold_2 . biological_region 463968 463975 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 458880 459671 . - . ID=Physo127518;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20094;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 458880 459671 . - . ID=Physo127518;Parent=Physo127518;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 458880 459671 . - . ID=Physo127518.1;Parent=Physo127518;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_2 . CDS 458913 459671 . - 0 ID=Physo127518;Parent=Physo127518;rank=1 scaffold_2 ensembl protein_coding_gene 461818 463875 . - . ID=Physo127519;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20095;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 461818 463875 . - . ID=Physo127519;Parent=Physo127519;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 461818 463875 . - 0 ID=Physo127519;Parent=Physo127519;rank=1 scaffold_2 . exon 461818 463875 . - . ID=Physo127519.1;Parent=Physo127519;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 464968 467036 . - . ID=Physo127520;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20096;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 464968 467036 . - . ID=Physo127520;Parent=Physo127520;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 464968 465758 . - 0 ID=Physo127520;Parent=Physo127520;rank=3 scaffold_2 . exon 464968 465758 . - . ID=Physo127520.3;Parent=Physo127520;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 465906 466441 . - 0 ID=Physo127520;Parent=Physo127520;rank=2 scaffold_2 . exon 465906 466441 . - . ID=Physo127520.2;Parent=Physo127520;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 466849 467036 . - 0 ID=Physo127520;Parent=Physo127520;rank=1 scaffold_2 . exon 466849 467036 . - . ID=Physo127520.1;Parent=Physo127520;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . exon 458455 458657 . - . ID=Physo155312.1;Parent=Physo155312;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 467200 468871 . + . ID=Physo155313;biotype=protein_coding;external_name=C_scaffold_2000022;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 467200 468871 . + . ID=Physo155313;Parent=Physo155313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 467200 467313 . + 0 ID=Physo155313;Parent=Physo155313;rank=1 scaffold_2 . exon 467200 467313 . + . ID=Physo155313.1;Parent=Physo155313;constitutive=1;rank=1 scaffold_2 . CDS 467386 467468 . + 0 ID=Physo155313;Parent=Physo155313;rank=2 scaffold_2 . exon 467386 467468 . + . ID=Physo155313.2;Parent=Physo155313;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 467544 467652 . + 0 ID=Physo155313;Parent=Physo155313;rank=3 scaffold_2 . exon 467544 467652 . + . ID=Physo155313.3;Parent=Physo155313;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 467716 467860 . + 0 ID=Physo155313;Parent=Physo155313;rank=4 scaffold_2 . exon 467716 467860 . + . ID=Physo155313.4;Parent=Physo155313;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 467933 468087 . + 0 ID=Physo155313;Parent=Physo155313;rank=5 scaffold_2 . exon 467933 468087 . + . ID=Physo155313.5;Parent=Physo155313;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 468295 468340 . + 0 ID=Physo155313;Parent=Physo155313;rank=6 scaffold_2 . CDS 468412 468540 . + 0 ID=Physo155313;Parent=Physo155313;rank=7 scaffold_2 . CDS 468615 468871 . + 0 ID=Physo155313;Parent=Physo155313;rank=8 scaffold_2 . repeat_region 473340 473379 . ? . description=trf scaffold_2 ensembl protein_coding_gene 469059 472789 . - . ID=Physo127522;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20098;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 469059 472789 . - . ID=Physo127522;Parent=Physo127522;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 469059 469595 . - 0 ID=Physo127522;Parent=Physo127522;rank=9 scaffold_2 . exon 469059 469595 . - . ID=Physo127522.9;Parent=Physo127522;constitutive=1;rank=9 scaffold_2 . CDS 469674 469916 . - 0 ID=Physo127522;Parent=Physo127522;rank=8 scaffold_2 . exon 469674 469916 . - . ID=Physo127522.8;Parent=Physo127522;constitutive=1;rank=8 scaffold_2 . CDS 469985 471074 . - 0 ID=Physo127522;Parent=Physo127522;rank=7 scaffold_2 . exon 469985 471074 . - . ID=Physo127522.7;Parent=Physo127522;constitutive=1;ensembl_phase=2;rank=7 scaffold_2 . CDS 471284 471733 . - 0 ID=Physo127522;Parent=Physo127522;rank=6 scaffold_2 . exon 471284 471733 . - . ID=Physo127522.6;Parent=Physo127522;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=6 scaffold_2 . CDS 471810 471994 . - 0 ID=Physo127522;Parent=Physo127522;rank=5 scaffold_2 . exon 471810 471994 . - . ID=Physo127522.5;Parent=Physo127522;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 472080 472224 . - 0 ID=Physo127522;Parent=Physo127522;rank=4 scaffold_2 . exon 472080 472224 . - . ID=Physo127522.4;Parent=Physo127522;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 472291 472388 . - 0 ID=Physo127522;Parent=Physo127522;rank=3 scaffold_2 . exon 472291 472388 . - . ID=Physo127522.3;Parent=Physo127522;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 472469 472695 . - 0 ID=Physo127522;Parent=Physo127522;rank=2 scaffold_2 . exon 472469 472695 . - . ID=Physo127522.2;Parent=Physo127522;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 472768 472789 . - 0 ID=Physo127522;Parent=Physo127522;rank=1 scaffold_2 . exon 472768 472789 . - . ID=Physo127522.1;Parent=Physo127522;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 475926 478680 . - . ID=Physo127524;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20100;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 475926 478680 . - . ID=Physo127524;Parent=Physo127524;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 475926 476143 . - 0 ID=Physo127524;Parent=Physo127524;rank=6 scaffold_2 . exon 475926 476143 . - . ID=Physo127524.6;Parent=Physo127524;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 476223 476343 . - 0 ID=Physo127524;Parent=Physo127524;rank=5 scaffold_2 . exon 476223 476343 . - . ID=Physo127524.5;Parent=Physo127524;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_2 . CDS 476420 476532 . - 0 ID=Physo127524;Parent=Physo127524;rank=4 scaffold_2 . exon 476420 476532 . - . ID=Physo127524.4;Parent=Physo127524;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 476687 476767 . - 0 ID=Physo127524;Parent=Physo127524;rank=3 scaffold_2 . exon 476687 476767 . - . ID=Physo127524.3;Parent=Physo127524;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 476878 478266 . - 0 ID=Physo127524;Parent=Physo127524;rank=2 scaffold_2 . exon 476878 478266 . - . ID=Physo127524.2;Parent=Physo127524;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 478452 478680 . - 0 ID=Physo127524;Parent=Physo127524;rank=1 scaffold_2 . exon 468295 468340 . + . ID=Physo155313.6;Parent=Physo155313;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_2 . exon 468412 468540 . + . ID=Physo155313.7;Parent=Physo155313;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_2 . exon 468615 468871 . + . ID=Physo155313.8;Parent=Physo155313;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 ensembl protein_coding_gene 474047 475726 . + . ID=Physo155316;biotype=protein_coding;external_name=C_scaffold_2000025;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 474047 475726 . + . ID=Physo155316;Parent=Physo155316;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 474047 474292 . + 0 ID=Physo155316;Parent=Physo155316;rank=1 scaffold_2 . exon 474047 474292 . + . ID=Physo155316.1;Parent=Physo155316;constitutive=1;rank=1 scaffold_2 . CDS 474332 475726 . + 0 ID=Physo155316;Parent=Physo155316;rank=2 scaffold_2 . exon 474332 475726 . + . ID=Physo155316.2;Parent=Physo155316;constitutive=1;rank=2 scaffold_2 . repeat_region 481879 481887 . ? . description=dust scaffold_2 . biological_region 482039 482041 0.999 + . logic_name=eponine scaffold_2 . biological_region 482294 482295 0.999 - . logic_name=eponine scaffold_2 . biological_region 482308 482308 0.999 + . logic_name=eponine scaffold_2 . biological_region 483071 483072 0.999 - . logic_name=eponine scaffold_2 . biological_region 483796 483799 0.999 - . logic_name=eponine scaffold_2 . biological_region 484117 484121 0.999 + . logic_name=eponine scaffold_2 . biological_region 484163 484163 0.999 - . logic_name=eponine scaffold_2 . biological_region 484200 484202 0.999 - . logic_name=eponine scaffold_2 . biological_region 484221 484221 0.999 - . logic_name=eponine scaffold_2 . biological_region 484741 484741 0.999 + . logic_name=eponine scaffold_2 . biological_region 484801 484808 0.999 + . logic_name=eponine scaffold_2 . biological_region 484820 484825 0.999 + . logic_name=eponine scaffold_2 . biological_region 484882 484887 0.999 + . logic_name=eponine scaffold_2 . biological_region 484931 484935 0.999 - . logic_name=eponine scaffold_2 . biological_region 485430 485431 0.999 + . logic_name=eponine scaffold_2 . biological_region 485806 485812 0.999 + . logic_name=eponine scaffold_2 . biological_region 485841 485842 0.999 + . logic_name=eponine scaffold_2 . biological_region 486103 486106 0.999 + . logic_name=eponine scaffold_2 . biological_region 486157 486159 0.999 + . logic_name=eponine scaffold_2 . biological_region 486204 486204 0.999 + . logic_name=eponine scaffold_2 . biological_region 486230 486233 0.999 + . logic_name=eponine scaffold_2 . biological_region 486323 486328 0.999 - . logic_name=eponine scaffold_2 . biological_region 486534 486538 0.999 + . logic_name=eponine scaffold_2 . biological_region 487052 487056 0.999 - . logic_name=eponine scaffold_2 . biological_region 487106 487112 0.999 + . logic_name=eponine scaffold_2 . biological_region 487195 487197 0.999 + . logic_name=eponine scaffold_2 . biological_region 487210 487213 0.999 + . logic_name=eponine scaffold_2 . biological_region 487233 487241 0.999 + . logic_name=eponine scaffold_2 . biological_region 487240 487245 0.999 - . logic_name=eponine scaffold_2 . biological_region 487333 487334 0.999 - . logic_name=eponine scaffold_2 . biological_region 487362 487366 0.999 - . logic_name=eponine scaffold_2 . biological_region 487386 487390 0.999 + . logic_name=eponine scaffold_2 . repeat_region 487726 487735 . ? . description=dust scaffold_2 . biological_region 487887 487889 0.999 + . logic_name=eponine scaffold_2 . exon 478452 478680 . - . ID=Physo127524.1;Parent=Physo127524;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 482343 483905 . + . ID=Physo127525;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20101;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 482343 483905 . + . ID=Physo127525;Parent=Physo127525;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 482343 483905 . + 0 ID=Physo127525;Parent=Physo127525;rank=1 scaffold_2 . exon 482343 483905 . + . ID=Physo127525.1;Parent=Physo127525;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 495057 495524 . + . ID=Physo110189;biotype=protein_coding;external_name=estExt_Genewise1.C_20035;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 495057 495524 . + . ID=Physo110189;Parent=Physo110189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 495057 495183 . + . ID=Physo110189.1;Parent=Physo110189;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . exon 495273 495378 . + . ID=Physo110189.2;Parent=Physo110189;constitutive=1;ensembl_phase=-1;rank=2 scaffold_2 . CDS 495274 495378 . + 0 ID=Physo110189;Parent=Physo110189;rank=1 scaffold_2 . CDS 495446 495523 . + 0 ID=Physo110189;Parent=Physo110189;rank=2 scaffold_2 . exon 495446 495524 . + . ID=Physo110189.3;Parent=Physo110189;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_2 ensembl protein_coding_gene 489579 490148 . + . ID=Physo127526;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20102;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 489579 490148 . + . ID=Physo127526;Parent=Physo127526;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 489579 490148 . + 0 ID=Physo127526;Parent=Physo127526;rank=1 scaffold_2 . exon 489579 490148 . + . ID=Physo127526.1;Parent=Physo127526;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 490312 492962 . - . ID=Physo127527;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20103;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 490312 492962 . - . ID=Physo127527;Parent=Physo127527;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 490312 491028 . - 0 ID=Physo127527;Parent=Physo127527;rank=10 scaffold_2 . exon 490312 491028 . - . ID=Physo127527.10;Parent=Physo127527;constitutive=1;rank=10 scaffold_2 . CDS 491110 491217 . - 0 ID=Physo127527;Parent=Physo127527;rank=9 scaffold_2 . exon 491110 491217 . - . ID=Physo127527.9;Parent=Physo127527;constitutive=1;rank=9 scaffold_2 . CDS 491254 491294 . - 0 ID=Physo127527;Parent=Physo127527;rank=8 scaffold_2 . exon 491254 491294 . - . ID=Physo127527.8;Parent=Physo127527;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 491390 491542 . - 0 ID=Physo127527;Parent=Physo127527;rank=7 scaffold_2 . exon 491390 491542 . - . ID=Physo127527.7;Parent=Physo127527;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 491616 491862 . - 0 ID=Physo127527;Parent=Physo127527;rank=6 scaffold_2 . exon 491616 491862 . - . ID=Physo127527.6;Parent=Physo127527;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_2 . CDS 491940 492113 . - 0 ID=Physo127527;Parent=Physo127527;rank=5 scaffold_2 . exon 491940 492113 . - . ID=Physo127527.5;Parent=Physo127527;constitutive=1;rank=5 scaffold_2 . CDS 492422 492527 . - 0 ID=Physo127527;Parent=Physo127527;rank=4 scaffold_2 . exon 492422 492527 . - . ID=Physo127527.4;Parent=Physo127527;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 492590 492639 . - 0 ID=Physo127527;Parent=Physo127527;rank=3 scaffold_2 . exon 492590 492639 . - . ID=Physo127527.3;Parent=Physo127527;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 492730 492782 . - 0 ID=Physo127527;Parent=Physo127527;rank=2 scaffold_2 . exon 492730 492782 . - . ID=Physo127527.2;Parent=Physo127527;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 492857 492962 . - 0 ID=Physo127527;Parent=Physo127527;rank=1 scaffold_2 . exon 492857 492962 . - . ID=Physo127527.1;Parent=Physo127527;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 494509 495012 . + . ID=Physo155318;biotype=protein_coding;external_name=C_scaffold_2000027;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 494509 495012 . + . ID=Physo155318;Parent=Physo155318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 494509 494756 . + 0 ID=Physo155318;Parent=Physo155318;rank=1 scaffold_2 . exon 494509 494756 . + . ID=Physo155318.1;Parent=Physo155318;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 494834 494893 . + 0 ID=Physo155318;Parent=Physo155318;rank=2 scaffold_2 . exon 494834 494893 . + . ID=Physo155318.2;Parent=Physo155318;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 494961 495012 . + 0 ID=Physo155318;Parent=Physo155318;rank=3 scaffold_2 . exon 494961 495012 . + . ID=Physo155318.3;Parent=Physo155318;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 495659 499149 . - . ID=Physo155319;biotype=protein_coding;external_name=C_scaffold_2000028;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 495659 499149 . - . ID=Physo155319;Parent=Physo155319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 495659 497278 . - 0 ID=Physo155319;Parent=Physo155319;rank=5 scaffold_2 . exon 495659 497278 . - . ID=Physo155319.5;Parent=Physo155319;constitutive=1;rank=5 scaffold_2 . CDS 497352 497516 . - 0 ID=Physo155319;Parent=Physo155319;rank=4 scaffold_2 . exon 497352 497516 . - . ID=Physo155319.4;Parent=Physo155319;constitutive=1;rank=4 scaffold_2 . CDS 497593 497886 . - 0 ID=Physo155319;Parent=Physo155319;rank=3 scaffold_2 . exon 497593 497886 . - . ID=Physo155319.3;Parent=Physo155319;constitutive=1;rank=3 scaffold_2 . CDS 497975 498427 . - 0 ID=Physo155319;Parent=Physo155319;rank=2 scaffold_2 . CDS 498496 499149 . - 0 ID=Physo155319;Parent=Physo155319;rank=1 scaffold_2 . biological_region 498625 498627 0.999 + . logic_name=eponine scaffold_2 . biological_region 498660 498665 0.999 - . logic_name=eponine scaffold_2 . repeat_region 498861 498978 . + . description=(TCG)n scaffold_2 . repeat_region 498952 498978 . ? . description=dust scaffold_2 . repeat_region 498952 498978 . ? . description=trf scaffold_2 . biological_region 499065 499067 0.999 - . logic_name=eponine scaffold_2 . biological_region 499180 499182 0.999 - . logic_name=eponine scaffold_2 . repeat_region 500233 500241 . ? . description=dust scaffold_2 . repeat_region 505663 505712 . ? . description=dust scaffold_2 ensembl protein_coding_gene 500757 501778 . + . ID=Physo127530;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20106;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 500757 501778 . + . ID=Physo127530;Parent=Physo127530;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 500757 500844 . + . ID=Physo127530.1;Parent=Physo127530;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 500769 500844 . + 0 ID=Physo127530;Parent=Physo127530;rank=1 scaffold_2 . CDS 500909 501008 . + 0 ID=Physo127530;Parent=Physo127530;rank=2 scaffold_2 . exon 500909 501008 . + . ID=Physo127530.2;Parent=Physo127530;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 501076 501316 . + 0 ID=Physo127530;Parent=Physo127530;rank=3 scaffold_2 . exon 501076 501316 . + . ID=Physo127530.3;Parent=Physo127530;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 501377 501778 . + 0 ID=Physo127530;Parent=Physo127530;rank=4 scaffold_2 . exon 501377 501778 . + . ID=Physo127530.4;Parent=Physo127530;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 506076 507162 . + . ID=Physo127531;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20107;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 506076 507162 . + . ID=Physo127531;Parent=Physo127531;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 506076 506104 . + . ID=Physo127531.1;Parent=Physo127531;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 506102 506104 . + 0 ID=Physo127531;Parent=Physo127531;rank=1 scaffold_2 . CDS 506180 506265 . + 0 ID=Physo127531;Parent=Physo127531;rank=2 scaffold_2 . exon 506180 506265 . + . ID=Physo127531.2;Parent=Physo127531;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 506341 506471 . + 0 ID=Physo127531;Parent=Physo127531;rank=3 scaffold_2 . exon 506341 506471 . + . ID=Physo127531.3;Parent=Physo127531;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 506548 506665 . + 0 ID=Physo127531;Parent=Physo127531;rank=4 scaffold_2 . exon 506548 506665 . + . ID=Physo127531.4;Parent=Physo127531;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 506735 506966 . + 0 ID=Physo127531;Parent=Physo127531;rank=5 scaffold_2 . exon 506735 506966 . + . ID=Physo127531.5;Parent=Physo127531;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 507049 507102 . + 0 ID=Physo127531;Parent=Physo127531;rank=6 scaffold_2 . exon 507049 507162 . + . ID=Physo127531.6;Parent=Physo127531;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_2 . exon 497975 498427 . - . ID=Physo155319.2;Parent=Physo155319;constitutive=1;rank=2 scaffold_2 . exon 498496 499149 . - . ID=Physo155319.1;Parent=Physo155319;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 499344 499704 . + . ID=Physo155320;biotype=protein_coding;external_name=C_scaffold_2000029;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 499344 499704 . + . ID=Physo155320;Parent=Physo155320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 499344 499526 . + 0 ID=Physo155320;Parent=Physo155320;rank=1 scaffold_2 . exon 499344 499526 . + . ID=Physo155320.1;Parent=Physo155320;constitutive=1;rank=1 scaffold_2 . CDS 499618 499704 . + 0 ID=Physo155320;Parent=Physo155320;rank=2 scaffold_2 . exon 499618 499704 . + . ID=Physo155320.2;Parent=Physo155320;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 507152 507996 . - . ID=Physo155322;biotype=protein_coding;external_name=C_scaffold_2000031;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 507152 507996 . - . ID=Physo155322;Parent=Physo155322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 507152 507373 . - 0 ID=Physo155322;Parent=Physo155322;rank=4 scaffold_2 . exon 507152 507373 . - . ID=Physo155322.4;Parent=Physo155322;constitutive=1;rank=4 scaffold_2 . CDS 507449 507527 . - 0 ID=Physo155322;Parent=Physo155322;rank=3 scaffold_2 . exon 507449 507527 . - . ID=Physo155322.3;Parent=Physo155322;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 507605 507824 . - 0 ID=Physo155322;Parent=Physo155322;rank=2 scaffold_2 . exon 507605 507824 . - . ID=Physo155322.2;Parent=Physo155322;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 507924 507996 . - 0 ID=Physo155322;Parent=Physo155322;rank=1 scaffold_2 ensembl protein_coding_gene 514442 514990 . + . ID=Physo110197;biotype=protein_coding;external_name=estExt_Genewise1.C_20043;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 514442 514990 . + . ID=Physo110197;Parent=Physo110197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 514442 514587 . + . ID=Physo110197.1;Parent=Physo110197;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 514488 514587 . + 0 ID=Physo110197;Parent=Physo110197;rank=1 scaffold_2 . CDS 514673 514989 . + 0 ID=Physo110197;Parent=Physo110197;rank=2 scaffold_2 . exon 514673 514990 . + . ID=Physo110197.2;Parent=Physo110197;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 517269 518888 . - . ID=Physo110199;biotype=protein_coding;external_name=estExt_Genewise1.C_20045;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 517269 518888 . - . ID=Physo110199;Parent=Physo110199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 517269 517857 . - . ID=Physo110199.4;Parent=Physo110199;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_2 . CDS 517435 517857 . - 0 ID=Physo110199;Parent=Physo110199;rank=2 scaffold_2 . CDS 517930 518154 . - 0 ID=Physo110199;Parent=Physo110199;rank=1 scaffold_2 ensembl protein_coding_gene 513017 513697 . - . ID=Physo127534;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20110;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 513017 513697 . - . ID=Physo127534;Parent=Physo127534;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 513017 513271 . - 0 ID=Physo127534;Parent=Physo127534;rank=3 scaffold_2 . exon 513017 513271 . - . ID=Physo127534.3;Parent=Physo127534;constitutive=1;rank=3 scaffold_2 . CDS 513340 513505 . - 0 ID=Physo127534;Parent=Physo127534;rank=2 scaffold_2 . exon 513340 513505 . - . ID=Physo127534.2;Parent=Physo127534;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 513621 513697 . - 0 ID=Physo127534;Parent=Physo127534;rank=1 scaffold_2 . exon 513621 513697 . - . ID=Physo127534.1;Parent=Physo127534;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . exon 507924 507996 . - . ID=Physo155322.1;Parent=Physo155322;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 508236 509741 . + . ID=Physo155323;biotype=protein_coding;external_name=C_scaffold_2000032;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 508236 509741 . + . ID=Physo155323;Parent=Physo155323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 508236 508377 . + 0 ID=Physo155323;Parent=Physo155323;rank=1 scaffold_2 . exon 508236 508377 . + . ID=Physo155323.1;Parent=Physo155323;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 508546 508637 . + 0 ID=Physo155323;Parent=Physo155323;rank=2 scaffold_2 . exon 508546 508637 . + . ID=Physo155323.2;Parent=Physo155323;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 508728 508810 . + 0 ID=Physo155323;Parent=Physo155323;rank=3 scaffold_2 . exon 508728 508810 . + . ID=Physo155323.3;Parent=Physo155323;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 508898 509238 . + 0 ID=Physo155323;Parent=Physo155323;rank=4 scaffold_2 . exon 508898 509238 . + . ID=Physo155323.4;Parent=Physo155323;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 509317 509444 . + 0 ID=Physo155323;Parent=Physo155323;rank=5 scaffold_2 . exon 509317 509444 . + . ID=Physo155323.5;Parent=Physo155323;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 509526 509573 . + 0 ID=Physo155323;Parent=Physo155323;rank=6 scaffold_2 . exon 509526 509573 . + . ID=Physo155323.6;Parent=Physo155323;constitutive=1;rank=6 scaffold_2 . CDS 509670 509741 . + 0 ID=Physo155323;Parent=Physo155323;rank=7 scaffold_2 . exon 509670 509741 . + . ID=Physo155323.7;Parent=Physo155323;constitutive=1;rank=7 scaffold_2 ensembl protein_coding_gene 510018 511166 . - . ID=Physo155324;biotype=protein_coding;external_name=C_scaffold_2000033;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 510018 511166 . - . ID=Physo155324;Parent=Physo155324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 510018 510203 . - 0 ID=Physo155324;Parent=Physo155324;rank=6 scaffold_2 . exon 510018 510203 . - . ID=Physo155324.6;Parent=Physo155324;constitutive=1;rank=6 scaffold_2 . CDS 510263 510376 . - 0 ID=Physo155324;Parent=Physo155324;rank=5 scaffold_2 . exon 510263 510376 . - . ID=Physo155324.5;Parent=Physo155324;constitutive=1;rank=5 scaffold_2 . CDS 510447 510503 . - 0 ID=Physo155324;Parent=Physo155324;rank=4 scaffold_2 . exon 510447 510503 . - . ID=Physo155324.4;Parent=Physo155324;constitutive=1;rank=4 scaffold_2 . CDS 510580 510711 . - 0 ID=Physo155324;Parent=Physo155324;rank=3 scaffold_2 . exon 510580 510711 . - . ID=Physo155324.3;Parent=Physo155324;constitutive=1;rank=3 scaffold_2 . CDS 510919 511023 . - 0 ID=Physo155324;Parent=Physo155324;rank=2 scaffold_2 . exon 510919 511023 . - . ID=Physo155324.2;Parent=Physo155324;constitutive=1;rank=2 scaffold_2 . CDS 511098 511166 . - 0 ID=Physo155324;Parent=Physo155324;rank=1 scaffold_2 . exon 511098 511166 . - . ID=Physo155324.1;Parent=Physo155324;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 515803 516807 . - . ID=Physo155327;biotype=protein_coding;external_name=C_scaffold_2000036;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 515803 516807 . - . ID=Physo155327;Parent=Physo155327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 515803 516159 . - 0 ID=Physo155327;Parent=Physo155327;rank=4 scaffold_2 . exon 515803 516159 . - . ID=Physo155327.4;Parent=Physo155327;constitutive=1;rank=4 scaffold_2 . CDS 516246 516358 . - 0 ID=Physo155327;Parent=Physo155327;rank=3 scaffold_2 . exon 516246 516358 . - . ID=Physo155327.3;Parent=Physo155327;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 516424 516586 . - 0 ID=Physo155327;Parent=Physo155327;rank=2 scaffold_2 . exon 516424 516586 . - . ID=Physo155327.2;Parent=Physo155327;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 516619 516807 . - 0 ID=Physo155327;Parent=Physo155327;rank=1 scaffold_2 . exon 516619 516807 . - . ID=Physo155327.1;Parent=Physo155327;constitutive=1;rank=1 scaffold_2 . biological_region 518578 518579 0.999 + . logic_name=eponine scaffold_2 . biological_region 518914 518918 0.999 + . logic_name=eponine scaffold_2 . biological_region 519091 519093 0.999 + . logic_name=eponine scaffold_2 . biological_region 519134 519136 0.999 + . logic_name=eponine scaffold_2 . biological_region 519136 519138 0.999 - . logic_name=eponine scaffold_2 . repeat_region 520184 520191 . ? . description=dust scaffold_2 . repeat_region 524548 524567 . ? . description=trf scaffold_2 . biological_region 526423 526427 0.999 + . logic_name=eponine scaffold_2 . repeat_region 526587 526617 . ? . description=trf scaffold_2 . biological_region 526602 526607 0.999 + . logic_name=eponine scaffold_2 . biological_region 526626 526630 0.999 - . logic_name=eponine scaffold_2 . repeat_region 526906 526931 . ? . description=trf scaffold_2 . exon 517930 518441 . - . ID=Physo110199.3;Parent=Physo110199;constitutive=1;ensembl_phase=-1;rank=3 scaffold_2 . exon 518547 518721 . - . ID=Physo110199.2;Parent=Physo110199;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_2 . exon 518743 518888 . - . ID=Physo110199.1;Parent=Physo110199;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 524532 525426 . - . ID=Physo127536;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20112;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 524532 525426 . - . ID=Physo127536;Parent=Physo127536;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 524532 524732 . - . ID=Physo127536.2;Parent=Physo127536;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_2 . CDS 524732 524732 . - 0 ID=Physo127536;Parent=Physo127536;rank=2 scaffold_2 . CDS 524851 525425 . - 0 ID=Physo127536;Parent=Physo127536;rank=1 scaffold_2 . exon 524851 525426 . - . ID=Physo127536.1;Parent=Physo127536;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 529886 530929 . + . ID=Physo127537;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20113;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 529886 530929 . + . ID=Physo127537;Parent=Physo127537;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 529886 530929 . + 0 ID=Physo127537;Parent=Physo127537;rank=1 scaffold_2 . exon 529886 530929 . + . ID=Physo127537.1;Parent=Physo127537;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 531141 534299 . + . ID=Physo127538;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20114;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 531141 534299 . + . ID=Physo127538;Parent=Physo127538;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 531141 534299 . + 0 ID=Physo127538;Parent=Physo127538;rank=1 scaffold_2 . exon 531141 534299 . + . ID=Physo127538.1;Parent=Physo127538;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 535960 537170 . - . ID=Physo127540;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20116;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 535960 537170 . - . ID=Physo127540;Parent=Physo127540;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 535960 536787 . - 0 ID=Physo127540;Parent=Physo127540;rank=3 scaffold_2 . exon 535960 536787 . - . ID=Physo127540.3;Parent=Physo127540;constitutive=1;rank=3 scaffold_2 . CDS 536870 537003 . - 0 ID=Physo127540;Parent=Physo127540;rank=2 scaffold_2 . exon 536870 537003 . - . ID=Physo127540.2;Parent=Physo127540;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 537074 537170 . - 0 ID=Physo127540;Parent=Physo127540;rank=1 scaffold_2 . exon 537074 537170 . - . ID=Physo127540.1;Parent=Physo127540;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 537530 541990 . - . ID=Physo127541;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20117;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 537530 541990 . - . ID=Physo127541;Parent=Physo127541;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 537530 541990 . - 0 ID=Physo127541;Parent=Physo127541;rank=1 scaffold_2 . exon 537530 541990 . - . ID=Physo127541.1;Parent=Physo127541;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 534634 535819 . - . ID=Physo155330;biotype=protein_coding;external_name=C_scaffold_2000039;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 534634 535819 . - . ID=Physo155330;Parent=Physo155330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 534634 534650 . - 0 ID=Physo155330;Parent=Physo155330;rank=3 scaffold_2 . exon 534634 534650 . - . ID=Physo155330.3;Parent=Physo155330;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 534670 534841 . - 0 ID=Physo155330;Parent=Physo155330;rank=2 scaffold_2 . exon 534670 534841 . - . ID=Physo155330.2;Parent=Physo155330;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 534872 535819 . - 0 ID=Physo155330;Parent=Physo155330;rank=1 scaffold_2 . exon 534872 535819 . - . ID=Physo155330.1;Parent=Physo155330;constitutive=1;rank=1 scaffold_2 . repeat_region 537909 537982 . ? . description=trf scaffold_2 . biological_region 538189 538190 0.999 + . logic_name=eponine scaffold_2 . repeat_region 538611 538630 . ? . description=trf scaffold_2 . repeat_region 538646 538704 . ? . description=trf scaffold_2 . biological_region 540262 540270 0.999 + . logic_name=eponine scaffold_2 . biological_region 540718 540722 0.999 + . logic_name=eponine scaffold_2 . biological_region 541251 541253 0.999 + . logic_name=eponine scaffold_2 . biological_region 541292 541294 0.999 + . logic_name=eponine scaffold_2 . repeat_region 541723 541747 . ? . description=dust scaffold_2 . biological_region 541803 541811 0.999 + . logic_name=eponine scaffold_2 . biological_region 541820 541835 0.999 + . logic_name=eponine scaffold_2 . biological_region 541830 541837 0.999 - . logic_name=eponine scaffold_2 . biological_region 541847 541854 0.999 + . logic_name=eponine scaffold_2 . biological_region 541857 541862 0.999 - . logic_name=eponine scaffold_2 . biological_region 541859 541871 0.999 + . logic_name=eponine scaffold_2 . repeat_region 541899 541943 . ? . description=dust scaffold_2 . biological_region 541904 541909 0.999 - . logic_name=eponine scaffold_2 . biological_region 541913 541917 0.999 + . logic_name=eponine scaffold_2 . biological_region 541918 541930 0.999 - . logic_name=eponine scaffold_2 . biological_region 541938 541944 0.999 - . logic_name=eponine scaffold_2 . repeat_region 543396 543404 . ? . description=dust scaffold_2 ensembl protein_coding_gene 544974 545594 . - . ID=Physo127542;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20118;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 544974 545594 . - . ID=Physo127542;Parent=Physo127542;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 544974 545594 . - 0 ID=Physo127542;Parent=Physo127542;rank=1 scaffold_2 . exon 544974 545594 . - . ID=Physo127542.1;Parent=Physo127542;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 547570 548584 . + . ID=Physo127543;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20119;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 547570 548584 . + . ID=Physo127543;Parent=Physo127543;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 547570 547585 . + 0 ID=Physo127543;Parent=Physo127543;rank=1 scaffold_2 . exon 547570 547585 . + . ID=Physo127543.1;Parent=Physo127543;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 547658 548511 . + 0 ID=Physo127543;Parent=Physo127543;rank=2 scaffold_2 . exon 547658 548511 . + . ID=Physo127543.2;Parent=Physo127543;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 548582 548584 . + 0 ID=Physo127543;Parent=Physo127543;rank=3 scaffold_2 . repeat_region 555208 555263 . + . description=(CTG)n scaffold_2 ensembl protein_coding_gene 550005 552194 . - . ID=Physo108182;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20014;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 550005 552194 . - . ID=Physo108182;Parent=Physo108182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 550005 550025 . - 0 ID=Physo108182;Parent=Physo108182;rank=4 scaffold_2 . exon 550005 550025 . - . ID=Physo108182.4;Parent=Physo108182;constitutive=1;rank=4 scaffold_2 . CDS 550431 550431 . - 0 ID=Physo108182;Parent=Physo108182;rank=3 scaffold_2 . exon 550431 550431 . - . ID=Physo108182.3;Parent=Physo108182;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 550550 550553 . - 0 ID=Physo108182;Parent=Physo108182;rank=2 scaffold_2 . exon 550550 550553 . - . ID=Physo108182.2;Parent=Physo108182;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 550957 552142 . - 0 ID=Physo108182;Parent=Physo108182;rank=1 scaffold_2 . exon 550957 552194 . - . ID=Physo108182.1;Parent=Physo108182;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2 . exon 548582 548584 . + . ID=Physo127543.3;Parent=Physo127543;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 553546 554717 . + . ID=Physo127545;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20121;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 553546 554717 . + . ID=Physo127545;Parent=Physo127545;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 553546 553630 . + 0 ID=Physo127545;Parent=Physo127545;rank=1 scaffold_2 . exon 553546 553630 . + . ID=Physo127545.1;Parent=Physo127545;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 553704 553770 . + 0 ID=Physo127545;Parent=Physo127545;rank=2 scaffold_2 . exon 553704 553770 . + . ID=Physo127545.2;Parent=Physo127545;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 553902 553974 . + 0 ID=Physo127545;Parent=Physo127545;rank=3 scaffold_2 . exon 553902 553974 . + . ID=Physo127545.3;Parent=Physo127545;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 554058 554250 . + 0 ID=Physo127545;Parent=Physo127545;rank=4 scaffold_2 . exon 554058 554250 . + . ID=Physo127545.4;Parent=Physo127545;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 554340 554512 . + 0 ID=Physo127545;Parent=Physo127545;rank=5 scaffold_2 . exon 554340 554512 . + . ID=Physo127545.5;Parent=Physo127545;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 554613 554717 . + 0 ID=Physo127545;Parent=Physo127545;rank=6 scaffold_2 . exon 554613 554717 . + . ID=Physo127545.6;Parent=Physo127545;constitutive=1;rank=6 scaffold_2 ensembl protein_coding_gene 556705 558399 . - . ID=Physo127546;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20122;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 556705 558399 . - . ID=Physo127546;Parent=Physo127546;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 556705 558399 . - 0 ID=Physo127546;Parent=Physo127546;rank=1 scaffold_2 . exon 556705 558399 . - . ID=Physo127546.1;Parent=Physo127546;constitutive=1;rank=1 scaffold_2 . biological_region 558094 558095 0.999 - . logic_name=eponine scaffold_2 . biological_region 558334 558337 0.999 + . logic_name=eponine scaffold_2 . biological_region 559716 559719 0.999 + . logic_name=eponine scaffold_2 . biological_region 562948 562950 0.999 - . logic_name=eponine scaffold_2 . repeat_region 565194 565232 . ? . description=dust scaffold_2 . repeat_region 565194 565232 . ? . description=trf scaffold_2 . repeat_region 565194 565232 . + . description=(CTA)n scaffold_2 . biological_region 565341 565350 0.999 + . logic_name=eponine scaffold_2 . biological_region 565421 565424 0.999 - . logic_name=eponine scaffold_2 . biological_region 565444 565447 0.999 - . logic_name=eponine scaffold_2 . biological_region 565478 565484 0.999 - . logic_name=eponine scaffold_2 . repeat_region 567321 567369 . ? . description=trf scaffold_2 ensembl protein_coding_gene 559755 561579 . - . ID=Physo127547;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20123;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 559755 561579 . - . ID=Physo127547;Parent=Physo127547;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 559755 559795 . - 0 ID=Physo127547;Parent=Physo127547;rank=3 scaffold_2 . exon 559755 559795 . - . ID=Physo127547.3;Parent=Physo127547;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 559845 560529 . - 0 ID=Physo127547;Parent=Physo127547;rank=2 scaffold_2 . exon 559845 560529 . - . ID=Physo127547.2;Parent=Physo127547;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 560953 561579 . - 0 ID=Physo127547;Parent=Physo127547;rank=1 scaffold_2 . exon 560953 561579 . - . ID=Physo127547.1;Parent=Physo127547;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 564524 565506 . - . ID=Physo127548;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20124;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 564524 565506 . - . ID=Physo127548;Parent=Physo127548;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 564524 564642 . - 0 ID=Physo127548;Parent=Physo127548;rank=4 scaffold_2 . exon 564524 564642 . - . ID=Physo127548.4;Parent=Physo127548;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 564768 564854 . - 0 ID=Physo127548;Parent=Physo127548;rank=3 scaffold_2 . exon 564768 564854 . - . ID=Physo127548.3;Parent=Physo127548;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 564960 565154 . - 0 ID=Physo127548;Parent=Physo127548;rank=2 scaffold_2 . exon 564960 565154 . - . ID=Physo127548.2;Parent=Physo127548;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 565266 565506 . - 0 ID=Physo127548;Parent=Physo127548;rank=1 scaffold_2 . exon 565266 565506 . - . ID=Physo127548.1;Parent=Physo127548;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 571945 573485 . + . ID=Physo108183;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20015;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 571945 573485 . + . ID=Physo108183;Parent=Physo108183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 571945 572199 . + . ID=Physo108183.1;Parent=Physo108183;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 571962 572199 . + 0 ID=Physo108183;Parent=Physo108183;rank=1 scaffold_2 . CDS 572320 573485 . + 0 ID=Physo108183;Parent=Physo108183;rank=2 scaffold_2 . exon 572320 573485 . + . ID=Physo108183.2;Parent=Physo108183;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 570494 571481 . - . ID=Physo127549;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20125;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 570494 571481 . - . ID=Physo127549;Parent=Physo127549;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 570494 570849 . - 0 ID=Physo127549;Parent=Physo127549;rank=3 scaffold_2 . exon 570494 570849 . - . ID=Physo127549.3;Parent=Physo127549;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 571068 571364 . - 0 ID=Physo127549;Parent=Physo127549;rank=2 scaffold_2 . exon 571068 571364 . - . ID=Physo127549.2;Parent=Physo127549;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 571451 571481 . - 0 ID=Physo127549;Parent=Physo127549;rank=1 scaffold_2 . exon 571451 571481 . - . ID=Physo127549.1;Parent=Physo127549;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . biological_region 577723 577726 0.999 + . logic_name=eponine scaffold_2 . biological_region 578048 578054 0.999 + . logic_name=eponine scaffold_2 . biological_region 578107 578109 0.999 + . logic_name=eponine scaffold_2 . biological_region 578124 578125 0.999 - . logic_name=eponine scaffold_2 . biological_region 579455 579457 0.999 - . logic_name=eponine scaffold_2 . biological_region 580049 580051 0.999 - . logic_name=eponine scaffold_2 . biological_region 580397 580398 0.999 + . logic_name=eponine scaffold_2 . repeat_region 580778 580802 . ? . description=trf scaffold_2 . repeat_region 580958 580982 . ? . description=trf scaffold_2 . repeat_region 581710 581821 . ? . description=trf scaffold_2 . repeat_region 581820 581863 . ? . description=trf scaffold_2 . repeat_region 581829 581873 . ? . description=trf scaffold_2 . repeat_region 584147 584173 . ? . description=dust scaffold_2 . repeat_region 584147 584173 . ? . description=trf scaffold_2 ensembl protein_coding_gene 577625 578913 . + . ID=Physo108184;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20016;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 577625 578913 . + . ID=Physo108184;Parent=Physo108184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 577625 578365 . + 0 ID=Physo108184;Parent=Physo108184;rank=1 scaffold_2 . exon 577625 578365 . + . ID=Physo108184.1;Parent=Physo108184;constitutive=1;rank=1 scaffold_2 . CDS 578533 578913 . + 0 ID=Physo108184;Parent=Physo108184;rank=2 scaffold_2 . exon 578533 578913 . + . ID=Physo108184.2;Parent=Physo108184;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 579252 581000 . - . ID=Physo127553;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20129;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 579252 581000 . - . ID=Physo127553;Parent=Physo127553;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 579252 581000 . - 0 ID=Physo127553;Parent=Physo127553;rank=1 scaffold_2 . exon 579252 581000 . - . ID=Physo127553.1;Parent=Physo127553;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 586351 586809 . - . ID=Physo127554;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20130;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 586351 586809 . - . ID=Physo127554;Parent=Physo127554;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 586351 586809 . - 0 ID=Physo127554;Parent=Physo127554;rank=1 scaffold_2 . exon 586351 586809 . - . ID=Physo127554.1;Parent=Physo127554;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 587689 588246 . + . ID=Physo127555;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20131;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 587689 588246 . + . ID=Physo127555;Parent=Physo127555;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 587689 588246 . + 0 ID=Physo127555;Parent=Physo127555;rank=1 scaffold_2 . exon 587689 588246 . + . ID=Physo127555.1;Parent=Physo127555;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 588590 595108 . - . ID=Physo127556;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20132;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 588590 595108 . - . ID=Physo127556;Parent=Physo127556;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 588590 595108 . - 0 ID=Physo127556;Parent=Physo127556;rank=1 scaffold_2 . exon 588590 595108 . - . ID=Physo127556.1;Parent=Physo127556;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 596578 597096 . - . ID=Physo127557;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20133;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 596578 597096 . - . ID=Physo127557;Parent=Physo127557;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 596578 597096 . - 0 ID=Physo127557;Parent=Physo127557;rank=1 scaffold_2 . exon 596578 597096 . - . ID=Physo127557.1;Parent=Physo127557;constitutive=1;rank=1 scaffold_2 . repeat_region 597615 597625 . ? . description=dust scaffold_2 . biological_region 598839 598841 0.999 - . logic_name=eponine scaffold_2 . repeat_region 598925 598932 . ? . description=dust scaffold_2 . repeat_region 600764 600771 . ? . description=dust scaffold_2 . repeat_region 601646 601669 . ? . description=dust scaffold_2 . repeat_region 601692 601699 . ? . description=dust scaffold_2 . repeat_region 602714 602827 . ? . description=trf scaffold_2 . repeat_region 604295 604414 . + . description=(CAG)n scaffold_2 . biological_region 604996 604997 0.999 - . logic_name=eponine scaffold_2 . repeat_region 605426 605433 . ? . description=dust scaffold_2 ensembl protein_coding_gene 607112 611770 . + . ID=Physo127558;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20134;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 607112 611770 . + . ID=Physo127558;Parent=Physo127558;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 607112 607624 . + 0 ID=Physo127558;Parent=Physo127558;rank=1 scaffold_2 . exon 607112 607624 . + . ID=Physo127558.1;Parent=Physo127558;constitutive=1;rank=1 scaffold_2 . CDS 607923 609362 . + 0 ID=Physo127558;Parent=Physo127558;rank=2 scaffold_2 . CDS 609434 611770 . + 0 ID=Physo127558;Parent=Physo127558;rank=3 scaffold_2 . exon 607923 609362 . + . ID=Physo127558.2;Parent=Physo127558;constitutive=1;rank=2 scaffold_2 . exon 609434 611770 . + . ID=Physo127558.3;Parent=Physo127558;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 614020 615436 . + . ID=Physo127559;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20135;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 614020 615436 . + . ID=Physo127559;Parent=Physo127559;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 614020 614645 . + 0 ID=Physo127559;Parent=Physo127559;rank=1 scaffold_2 . exon 614020 614645 . + . ID=Physo127559.1;Parent=Physo127559;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 614710 615336 . + 0 ID=Physo127559;Parent=Physo127559;rank=2 scaffold_2 . exon 614710 615336 . + . ID=Physo127559.2;Parent=Physo127559;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 615418 615436 . + 0 ID=Physo127559;Parent=Physo127559;rank=3 scaffold_2 . exon 615418 615436 . + . ID=Physo127559.3;Parent=Physo127559;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . biological_region 618491 618498 0.999 + . logic_name=eponine scaffold_2 . repeat_region 621605 621706 . ? . description=trf scaffold_2 . repeat_region 622159 622208 . ? . description=dust scaffold_2 . biological_region 622701 622708 0.999 + . logic_name=eponine scaffold_2 . repeat_region 625814 625915 . ? . description=trf scaffold_2 . repeat_region 626540 626624 . ? . description=trf scaffold_2 ensembl protein_coding_gene 617893 618614 . + . ID=Physo127560;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20136;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 617893 618614 . + . ID=Physo127560;Parent=Physo127560;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 617893 618162 . + 0 ID=Physo127560;Parent=Physo127560;rank=1 scaffold_2 . exon 617893 618162 . + . ID=Physo127560.1;Parent=Physo127560;constitutive=1;rank=1 scaffold_2 . CDS 618265 618375 . + 0 ID=Physo127560;Parent=Physo127560;rank=2 scaffold_2 . exon 618265 618375 . + . ID=Physo127560.2;Parent=Physo127560;constitutive=1;rank=2 scaffold_2 . CDS 618486 618614 . + 0 ID=Physo127560;Parent=Physo127560;rank=3 scaffold_2 . exon 618486 618614 . + . ID=Physo127560.3;Parent=Physo127560;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 621848 622824 . + . ID=Physo127561;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20137;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 621848 622824 . + . ID=Physo127561;Parent=Physo127561;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 621848 622105 . + 0 ID=Physo127561;Parent=Physo127561;rank=1 scaffold_2 . exon 621848 622105 . + . ID=Physo127561.1;Parent=Physo127561;constitutive=1;rank=1 scaffold_2 . CDS 622475 622585 . + 0 ID=Physo127561;Parent=Physo127561;rank=2 scaffold_2 . exon 622475 622585 . + . ID=Physo127561.2;Parent=Physo127561;constitutive=1;rank=2 scaffold_2 . CDS 622696 622824 . + 0 ID=Physo127561;Parent=Physo127561;rank=3 scaffold_2 . exon 622696 622824 . + . ID=Physo127561.3;Parent=Physo127561;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 631558 633406 . - . ID=Physo127562;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20138;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 631558 633406 . - . ID=Physo127562;Parent=Physo127562;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 631558 631567 . - 0 ID=Physo127562;Parent=Physo127562;rank=2 scaffold_2 . exon 631558 631567 . - . ID=Physo127562.2;Parent=Physo127562;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 631668 633406 . - 0 ID=Physo127562;Parent=Physo127562;rank=1 scaffold_2 . exon 631668 633406 . - . ID=Physo127562.1;Parent=Physo127562;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 637125 638266 . - . ID=Physo127563;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20139;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 637125 638266 . - . ID=Physo127563;Parent=Physo127563;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 637125 637136 . - 0 ID=Physo127563;Parent=Physo127563;rank=5 scaffold_2 . exon 637125 637136 . - . ID=Physo127563.5;Parent=Physo127563;constitutive=1;rank=5 scaffold_2 . CDS 637201 637258 . - 0 ID=Physo127563;Parent=Physo127563;rank=4 scaffold_2 . exon 637201 637258 . - . ID=Physo127563.4;Parent=Physo127563;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 637499 637644 . - 0 ID=Physo127563;Parent=Physo127563;rank=3 scaffold_2 . CDS 637713 637910 . - 0 ID=Physo127563;Parent=Physo127563;rank=2 scaffold_2 . CDS 638000 638266 . - 0 ID=Physo127563;Parent=Physo127563;rank=1 scaffold_2 . biological_region 638199 638205 0.999 - . logic_name=eponine scaffold_2 . repeat_region 640968 640984 . ? . description=dust scaffold_2 . repeat_region 643280 643294 . ? . description=dust scaffold_2 . biological_region 644430 644431 0.999 + . logic_name=eponine scaffold_2 . biological_region 647086 647092 0.999 + . logic_name=eponine scaffold_2 . biological_region 647186 647186 0.999 - . logic_name=eponine scaffold_2 . biological_region 647255 647255 0.999 - . logic_name=eponine scaffold_2 . exon 637499 637644 . - . ID=Physo127563.3;Parent=Physo127563;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . exon 637713 637910 . - . ID=Physo127563.2;Parent=Physo127563;constitutive=1;rank=2 scaffold_2 . exon 638000 638266 . - . ID=Physo127563.1;Parent=Physo127563;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 646941 647744 . + . ID=Physo127564;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20140;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 646941 647744 . + . ID=Physo127564;Parent=Physo127564;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 646941 647744 . + 0 ID=Physo127564;Parent=Physo127564;rank=1 scaffold_2 . exon 646941 647744 . + . ID=Physo127564.1;Parent=Physo127564;constitutive=1;rank=1 scaffold_2 . repeat_region 656631 656659 . ? . description=trf scaffold_2 ensembl protein_coding_gene 648191 650256 . + . ID=Physo127565;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20141;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 648191 650256 . + . ID=Physo127565;Parent=Physo127565;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 648191 648210 . + 0 ID=Physo127565;Parent=Physo127565;rank=1 scaffold_2 . exon 648191 648210 . + . ID=Physo127565.1;Parent=Physo127565;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 648305 648581 . + 0 ID=Physo127565;Parent=Physo127565;rank=2 scaffold_2 . exon 648305 648581 . + . ID=Physo127565.2;Parent=Physo127565;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 648657 648725 . + 0 ID=Physo127565;Parent=Physo127565;rank=3 scaffold_2 . exon 648657 648725 . + . ID=Physo127565.3;Parent=Physo127565;constitutive=1;rank=3 scaffold_2 . CDS 648805 648848 . + 0 ID=Physo127565;Parent=Physo127565;rank=4 scaffold_2 . exon 648805 648848 . + . ID=Physo127565.4;Parent=Physo127565;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 648923 649362 . + 0 ID=Physo127565;Parent=Physo127565;rank=5 scaffold_2 . exon 648923 649362 . + . ID=Physo127565.5;Parent=Physo127565;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 649955 650256 . + 0 ID=Physo127565;Parent=Physo127565;rank=6 scaffold_2 . exon 649955 650256 . + . ID=Physo127565.6;Parent=Physo127565;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 ensembl protein_coding_gene 652728 654327 . - . ID=Physo127566;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20142;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 652728 654327 . - . ID=Physo127566;Parent=Physo127566;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 652728 653558 . - 0 ID=Physo127566;Parent=Physo127566;rank=4 scaffold_2 . exon 652728 653558 . - . ID=Physo127566.4;Parent=Physo127566;constitutive=1;rank=4 scaffold_2 . CDS 653656 653727 . - 0 ID=Physo127566;Parent=Physo127566;rank=3 scaffold_2 . exon 653656 653727 . - . ID=Physo127566.3;Parent=Physo127566;constitutive=1;rank=3 scaffold_2 . CDS 653820 654000 . - 0 ID=Physo127566;Parent=Physo127566;rank=2 scaffold_2 . exon 653820 654000 . - . ID=Physo127566.2;Parent=Physo127566;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 654083 654327 . - 0 ID=Physo127566;Parent=Physo127566;rank=1 scaffold_2 . exon 654083 654327 . - . ID=Physo127566.1;Parent=Physo127566;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 655958 657536 . + . ID=Physo127567;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20143;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 655958 657536 . + . ID=Physo127567;Parent=Physo127567;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 655958 655980 . + 0 ID=Physo127567;Parent=Physo127567;rank=1 scaffold_2 . exon 655958 655980 . + . ID=Physo127567.1;Parent=Physo127567;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 656044 656146 . + 0 ID=Physo127567;Parent=Physo127567;rank=2 scaffold_2 . exon 656044 656146 . + . ID=Physo127567.2;Parent=Physo127567;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 656221 656273 . + 0 ID=Physo127567;Parent=Physo127567;rank=3 scaffold_2 . exon 656221 656273 . + . ID=Physo127567.3;Parent=Physo127567;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 656364 656489 . + 0 ID=Physo127567;Parent=Physo127567;rank=4 scaffold_2 . exon 656364 656489 . + . ID=Physo127567.4;Parent=Physo127567;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_2 . CDS 656558 656608 . + 0 ID=Physo127567;Parent=Physo127567;rank=5 scaffold_2 . exon 656558 656608 . + . ID=Physo127567.5;Parent=Physo127567;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_2 . CDS 656716 656869 . + 0 ID=Physo127567;Parent=Physo127567;rank=6 scaffold_2 . exon 656716 656869 . + . ID=Physo127567.6;Parent=Physo127567;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 656941 657084 . + 0 ID=Physo127567;Parent=Physo127567;rank=7 scaffold_2 . exon 656941 657084 . + . ID=Physo127567.7;Parent=Physo127567;constitutive=1;rank=7 scaffold_2 . CDS 657153 657536 . + 0 ID=Physo127567;Parent=Physo127567;rank=8 scaffold_2 . exon 657153 657536 . + . ID=Physo127567.8;Parent=Physo127567;constitutive=1;rank=8 scaffold_2 . biological_region 659095 659095 0.999 + . logic_name=eponine scaffold_2 . biological_region 659118 659119 0.999 - . logic_name=eponine scaffold_2 . biological_region 659666 659669 0.999 + . logic_name=eponine scaffold_2 . biological_region 660256 660257 0.999 + . logic_name=eponine scaffold_2 . biological_region 660289 660293 0.999 - . logic_name=eponine scaffold_2 . biological_region 660309 660314 0.999 + . logic_name=eponine scaffold_2 . biological_region 660328 660332 0.999 + . logic_name=eponine scaffold_2 . biological_region 660409 660409 0.999 - . logic_name=eponine scaffold_2 . biological_region 664577 664582 0.999 + . logic_name=eponine scaffold_2 . repeat_region 664959 664982 . ? . description=dust scaffold_2 ensembl protein_coding_gene 657662 660601 . - . ID=Physo127568;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20144;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 657662 660601 . - . ID=Physo127568;Parent=Physo127568;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 657662 660601 . - 0 ID=Physo127568;Parent=Physo127568;rank=1 scaffold_2 . exon 657662 660601 . - . ID=Physo127568.1;Parent=Physo127568;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 661967 666482 . + . ID=Physo127569;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20145;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 661967 666482 . + . ID=Physo127569;Parent=Physo127569;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 661967 662499 . + 0 ID=Physo127569;Parent=Physo127569;rank=1 scaffold_2 . exon 661967 662499 . + . ID=Physo127569.1;Parent=Physo127569;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 662597 662718 . + 0 ID=Physo127569;Parent=Physo127569;rank=2 scaffold_2 . exon 662597 662718 . + . ID=Physo127569.2;Parent=Physo127569;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 662795 663507 . + 0 ID=Physo127569;Parent=Physo127569;rank=3 scaffold_2 . exon 662795 663507 . + . ID=Physo127569.3;Parent=Physo127569;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 663585 663831 . + 0 ID=Physo127569;Parent=Physo127569;rank=4 scaffold_2 . exon 663585 663831 . + . ID=Physo127569.4;Parent=Physo127569;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 663901 664043 . + 0 ID=Physo127569;Parent=Physo127569;rank=5 scaffold_2 . exon 663901 664043 . + . ID=Physo127569.5;Parent=Physo127569;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 664325 664891 . + 0 ID=Physo127569;Parent=Physo127569;rank=6 scaffold_2 . exon 664325 664891 . + . ID=Physo127569.6;Parent=Physo127569;constitutive=1;rank=6 scaffold_2 . CDS 664990 665094 . + 0 ID=Physo127569;Parent=Physo127569;rank=7 scaffold_2 . exon 664990 665094 . + . ID=Physo127569.7;Parent=Physo127569;constitutive=1;rank=7 scaffold_2 . CDS 665166 665615 . + 0 ID=Physo127569;Parent=Physo127569;rank=8 scaffold_2 . exon 665166 665615 . + . ID=Physo127569.8;Parent=Physo127569;constitutive=1;rank=8 scaffold_2 . CDS 665690 665791 . + 0 ID=Physo127569;Parent=Physo127569;rank=9 scaffold_2 . exon 665690 665791 . + . ID=Physo127569.9;Parent=Physo127569;constitutive=1;rank=9 scaffold_2 . CDS 665862 666341 . + 0 ID=Physo127569;Parent=Physo127569;rank=10 scaffold_2 . exon 665862 666341 . + . ID=Physo127569.10;Parent=Physo127569;constitutive=1;rank=10 scaffold_2 . CDS 666411 666482 . + 0 ID=Physo127569;Parent=Physo127569;rank=11 scaffold_2 . exon 666411 666482 . + . ID=Physo127569.11;Parent=Physo127569;constitutive=1;rank=11 scaffold_2 ensembl protein_coding_gene 666614 669884 . - . ID=Physo127570;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20146;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 666614 669884 . - . ID=Physo127570;Parent=Physo127570;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 666614 666663 . - 0 ID=Physo127570;Parent=Physo127570;rank=2 scaffold_2 . exon 666614 666663 . - . ID=Physo127570.2;Parent=Physo127570;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 666698 669884 . - 0 ID=Physo127570;Parent=Physo127570;rank=1 scaffold_2 . exon 666698 669884 . - . ID=Physo127570.1;Parent=Physo127570;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 670199 673044 . - . ID=Physo110216;biotype=protein_coding;external_name=estExt_Genewise1.C_20062;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 670199 673044 . - . ID=Physo110216;Parent=Physo110216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 670199 670328 . - 0 ID=Physo110216;Parent=Physo110216;rank=2 scaffold_2 . exon 670199 670328 . - . ID=Physo110216.4;Parent=Physo110216;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 670377 671326 . - 0 ID=Physo110216;Parent=Physo110216;rank=1 scaffold_2 . exon 670377 671652 . - . ID=Physo110216.3;Parent=Physo110216;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=3 scaffold_2 . exon 671690 672852 . - . ID=Physo110216.2;Parent=Physo110216;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_2 . exon 672925 673044 . - . ID=Physo110216.1;Parent=Physo110216;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 673279 676593 . + . ID=Physo127571;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20147;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 673279 676593 . + . ID=Physo127571;Parent=Physo127571;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 673279 676593 . + 0 ID=Physo127571;Parent=Physo127571;rank=1 scaffold_2 . exon 673279 676593 . + . ID=Physo127571.1;Parent=Physo127571;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 676635 679709 . - . ID=Physo127572;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20148;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 676635 679709 . - . ID=Physo127572;Parent=Physo127572;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 676635 677649 . - . ID=Physo127572.7;Parent=Physo127572;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=7 scaffold_2 . CDS 676698 677649 . - 0 ID=Physo127572;Parent=Physo127572;rank=7 scaffold_2 . CDS 677691 677770 . - 0 ID=Physo127572;Parent=Physo127572;rank=6 scaffold_2 . CDS 677968 678001 . - 0 ID=Physo127572;Parent=Physo127572;rank=5 scaffold_2 . CDS 678305 678342 . - 0 ID=Physo127572;Parent=Physo127572;rank=4 scaffold_2 . CDS 678423 678810 . - 0 ID=Physo127572;Parent=Physo127572;rank=3 scaffold_2 . CDS 678931 679613 . - 0 ID=Physo127572;Parent=Physo127572;rank=2 scaffold_2 . CDS 679653 679709 . - 0 ID=Physo127572;Parent=Physo127572;rank=1 scaffold_2 . repeat_region 679031 679082 . ? . description=trf scaffold_2 . repeat_region 679031 679103 . ? . description=trf scaffold_2 . repeat_region 679033 679079 . ? . description=trf scaffold_2 . repeat_region 679036 679099 . ? . description=dust scaffold_2 . repeat_region 679039 679106 . ? . description=trf scaffold_2 . repeat_region 681538 681546 . ? . description=dust scaffold_2 . biological_region 682163 682169 0.999 + . logic_name=eponine scaffold_2 . biological_region 682666 682667 0.999 - . logic_name=eponine scaffold_2 . biological_region 682678 682681 0.999 - . logic_name=eponine scaffold_2 . biological_region 683502 683503 0.999 - . logic_name=eponine scaffold_2 . biological_region 683671 683674 0.999 - . logic_name=eponine scaffold_2 . repeat_region 684023 684042 . ? . description=trf scaffold_2 . repeat_region 684115 684122 . ? . description=dust scaffold_2 ensembl protein_coding_gene 681896 683750 . + . ID=Physo108185;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20017;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 681896 683750 . + . ID=Physo108185;Parent=Physo108185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 681896 683010 . + . ID=Physo108185.1;Parent=Physo108185;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 681942 683010 . + 0 ID=Physo108185;Parent=Physo108185;rank=1 scaffold_2 . CDS 683125 683750 . + 0 ID=Physo108185;Parent=Physo108185;rank=2 scaffold_2 . exon 683125 683750 . + . ID=Physo108185.2;Parent=Physo108185;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . exon 677691 677770 . - . ID=Physo127572.6;Parent=Physo127572;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_2 . exon 677968 678001 . - . ID=Physo127572.5;Parent=Physo127572;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . exon 678305 678342 . - . ID=Physo127572.4;Parent=Physo127572;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . exon 678423 678810 . - . ID=Physo127572.3;Parent=Physo127572;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . exon 678931 679613 . - . ID=Physo127572.2;Parent=Physo127572;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . exon 679653 679709 . - . ID=Physo127572.1;Parent=Physo127572;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 680244 681084 . + . ID=Physo127573;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20149;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 680244 681084 . + . ID=Physo127573;Parent=Physo127573;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 680244 680527 . + 0 ID=Physo127573;Parent=Physo127573;rank=1 scaffold_2 . exon 680244 680527 . + . ID=Physo127573.1;Parent=Physo127573;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 680617 680700 . + 0 ID=Physo127573;Parent=Physo127573;rank=2 scaffold_2 . exon 680617 680700 . + . ID=Physo127573.2;Parent=Physo127573;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 680781 680959 . + 0 ID=Physo127573;Parent=Physo127573;rank=3 scaffold_2 . exon 680781 680959 . + . ID=Physo127573.3;Parent=Physo127573;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 681039 681055 . + 0 ID=Physo127573;Parent=Physo127573;rank=4 scaffold_2 . exon 681039 681084 . + . ID=Physo127573.4;Parent=Physo127573;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 684145 687174 . + . ID=Physo127575;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20151;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 684145 687174 . + . ID=Physo127575;Parent=Physo127575;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 684145 687174 . + 0 ID=Physo127575;Parent=Physo127575;rank=1 scaffold_2 . exon 684145 687174 . + . ID=Physo127575.1;Parent=Physo127575;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 693118 695521 . + . ID=Physo108186;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20018;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 693118 695521 . + . ID=Physo108186;Parent=Physo108186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 693118 694729 . + 0 ID=Physo108186;Parent=Physo108186;rank=1 scaffold_2 . exon 693118 694729 . + . ID=Physo108186.1;Parent=Physo108186;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 694769 695316 . + 0 ID=Physo108186;Parent=Physo108186;rank=2 scaffold_2 . exon 694769 695316 . + . ID=Physo108186.2;Parent=Physo108186;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 695348 695521 . + 0 ID=Physo108186;Parent=Physo108186;rank=3 scaffold_2 . exon 695348 695521 . + . ID=Physo108186.3;Parent=Physo108186;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 689651 692594 . - . ID=Physo127576;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20152;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 689651 692594 . - . ID=Physo127576;Parent=Physo127576;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 689651 692475 . - 0 ID=Physo127576;Parent=Physo127576;rank=2 scaffold_2 . exon 689651 692475 . - . ID=Physo127576.2;Parent=Physo127576;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 692561 692594 . - 0 ID=Physo127576;Parent=Physo127576;rank=1 scaffold_2 . exon 692561 692594 . - . ID=Physo127576.1;Parent=Physo127576;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 695653 697042 . + . ID=Physo127578;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20154;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 695653 697042 . + . ID=Physo127578;Parent=Physo127578;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 695653 696054 . + 0 ID=Physo127578;Parent=Physo127578;rank=1 scaffold_2 . exon 695653 696054 . + . ID=Physo127578.1;Parent=Physo127578;constitutive=1;rank=1 scaffold_2 . CDS 696124 696818 . + 0 ID=Physo127578;Parent=Physo127578;rank=2 scaffold_2 . exon 696124 696818 . + . ID=Physo127578.2;Parent=Physo127578;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 696890 696930 . + 0 ID=Physo127578;Parent=Physo127578;rank=3 scaffold_2 . exon 696890 696930 . + . ID=Physo127578.3;Parent=Physo127578;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 697011 697042 . + 0 ID=Physo127578;Parent=Physo127578;rank=4 scaffold_2 . exon 697011 697042 . + . ID=Physo127578.4;Parent=Physo127578;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . biological_region 701044 701049 0.999 + . logic_name=eponine scaffold_2 . biological_region 701053 701056 0.999 - . logic_name=eponine scaffold_2 . biological_region 701637 701639 0.999 - . logic_name=eponine scaffold_2 . repeat_region 702243 702300 . ? . description=dust scaffold_2 . biological_region 707069 707074 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 700786 701838 . - . ID=Physo127579;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20155;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 700786 701838 . - . ID=Physo127579;Parent=Physo127579;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 700786 701358 . - 0 ID=Physo127579;Parent=Physo127579;rank=2 scaffold_2 . exon 700786 701358 . - . ID=Physo127579.2;Parent=Physo127579;constitutive=1;rank=2 scaffold_2 . CDS 701432 701833 . - 0 ID=Physo127579;Parent=Physo127579;rank=1 scaffold_2 . exon 701432 701838 . - . ID=Physo127579.1;Parent=Physo127579;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 702787 706822 . - . ID=Physo127580;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20156;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 702787 706822 . - . ID=Physo127580;Parent=Physo127580;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 702787 704409 . - 0 ID=Physo127580;Parent=Physo127580;rank=3 scaffold_2 . exon 702787 704409 . - . ID=Physo127580.3;Parent=Physo127580;constitutive=1;rank=3 scaffold_2 . CDS 704598 706147 . - 0 ID=Physo127580;Parent=Physo127580;rank=2 scaffold_2 . exon 704598 706147 . - . ID=Physo127580.2;Parent=Physo127580;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 706297 706822 . - 0 ID=Physo127580;Parent=Physo127580;rank=1 scaffold_2 . exon 706297 706822 . - . ID=Physo127580.1;Parent=Physo127580;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 709171 709195 . ? . description=trf scaffold_2 . repeat_region 716708 716949 . ? . description=trf scaffold_2 ensembl protein_coding_gene 709670 710388 . + . ID=Physo108187;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20019;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 709670 710388 . + . ID=Physo108187;Parent=Physo108187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 709670 709738 . + 0 ID=Physo108187;Parent=Physo108187;rank=1 scaffold_2 . exon 709670 709738 . + . ID=Physo108187.1;Parent=Physo108187;constitutive=1;rank=1 scaffold_2 . CDS 709814 709902 . + 0 ID=Physo108187;Parent=Physo108187;rank=2 scaffold_2 . exon 709814 709902 . + . ID=Physo108187.2;Parent=Physo108187;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 709982 710097 . + 0 ID=Physo108187;Parent=Physo108187;rank=3 scaffold_2 . exon 709982 710097 . + . ID=Physo108187.3;Parent=Physo108187;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 710174 710388 . + 0 ID=Physo108187;Parent=Physo108187;rank=4 scaffold_2 . exon 710174 710388 . + . ID=Physo108187.4;Parent=Physo108187;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 708133 709539 . - . ID=Physo127581;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20157;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 708133 709539 . - . ID=Physo127581;Parent=Physo127581;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 708133 709539 . - 0 ID=Physo127581;Parent=Physo127581;rank=1 scaffold_2 . exon 708133 709539 . - . ID=Physo127581.1;Parent=Physo127581;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 710511 711097 . - . ID=Physo127583;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20159;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 710511 711097 . - . ID=Physo127583;Parent=Physo127583;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 710511 710922 . - . ID=Physo127583.2;Parent=Physo127583;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_2 . CDS 710573 710922 . - 0 ID=Physo127583;Parent=Physo127583;rank=2 scaffold_2 . CDS 710998 711052 . - 0 ID=Physo127583;Parent=Physo127583;rank=1 scaffold_2 . exon 710998 711097 . - . ID=Physo127583.1;Parent=Physo127583;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 711588 713542 . + . ID=Physo127584;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20160;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 711588 713542 . + . ID=Physo127584;Parent=Physo127584;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 711588 713329 . + 0 ID=Physo127584;Parent=Physo127584;rank=1 scaffold_2 . exon 711588 713329 . + . ID=Physo127584.1;Parent=Physo127584;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 713401 713467 . + 0 ID=Physo127584;Parent=Physo127584;rank=2 scaffold_2 . exon 713401 713542 . + . ID=Physo127584.2;Parent=Physo127584;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_2 . biological_region 717841 717843 0.999 + . logic_name=eponine scaffold_2 . biological_region 720240 720246 0.999 - . logic_name=eponine scaffold_2 . biological_region 720262 720267 0.999 - . logic_name=eponine scaffold_2 . biological_region 720293 720297 0.999 - . logic_name=eponine scaffold_2 . biological_region 726022 726022 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 724833 726732 . + . ID=Physo108188;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20020;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 724833 726732 . + . ID=Physo108188;Parent=Physo108188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 724833 724941 . + . ID=Physo108188.1;Parent=Physo108188;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 724902 724941 . + 0 ID=Physo108188;Parent=Physo108188;rank=1 scaffold_2 . CDS 725028 725159 . + 0 ID=Physo108188;Parent=Physo108188;rank=2 scaffold_2 . exon 725028 725159 . + . ID=Physo108188.2;Parent=Physo108188;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 725237 726501 . + 0 ID=Physo108188;Parent=Physo108188;rank=3 scaffold_2 . exon 725237 726732 . + . ID=Physo108188.3;Parent=Physo108188;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_2 ensembl protein_coding_gene 717092 718102 . - . ID=Physo127585;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20161;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 717092 718102 . - . ID=Physo127585;Parent=Physo127585;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 717092 718102 . - 0 ID=Physo127585;Parent=Physo127585;rank=1 scaffold_2 . exon 717092 718102 . - . ID=Physo127585.1;Parent=Physo127585;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 718477 720258 . - . ID=Physo127586;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20162;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 718477 720258 . - . ID=Physo127586;Parent=Physo127586;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 718477 718601 . - . ID=Physo127586.8;Parent=Physo127586;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_2 . CDS 718515 718601 . - 0 ID=Physo127586;Parent=Physo127586;rank=8 scaffold_2 . CDS 718669 718716 . - 0 ID=Physo127586;Parent=Physo127586;rank=7 scaffold_2 . exon 718669 718716 . - . ID=Physo127586.7;Parent=Physo127586;constitutive=1;rank=7 scaffold_2 . CDS 718779 718856 . - 0 ID=Physo127586;Parent=Physo127586;rank=6 scaffold_2 . exon 718779 718856 . - . ID=Physo127586.6;Parent=Physo127586;constitutive=1;rank=6 scaffold_2 . CDS 718928 719060 . - 0 ID=Physo127586;Parent=Physo127586;rank=5 scaffold_2 . exon 718928 719060 . - . ID=Physo127586.5;Parent=Physo127586;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 719131 719366 . - 0 ID=Physo127586;Parent=Physo127586;rank=4 scaffold_2 . exon 719131 719366 . - . ID=Physo127586.4;Parent=Physo127586;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 719439 719609 . - 0 ID=Physo127586;Parent=Physo127586;rank=3 scaffold_2 . exon 719439 719609 . - . ID=Physo127586.3;Parent=Physo127586;constitutive=1;rank=3 scaffold_2 . CDS 719676 719981 . - 0 ID=Physo127586;Parent=Physo127586;rank=2 scaffold_2 . exon 719676 719981 . - . ID=Physo127586.2;Parent=Physo127586;constitutive=1;rank=2 scaffold_2 . CDS 720102 720248 . - 0 ID=Physo127586;Parent=Physo127586;rank=1 scaffold_2 . exon 720102 720258 . - . ID=Physo127586.1;Parent=Physo127586;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 720419 721786 . - . ID=Physo127587;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20163;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 720419 721786 . - . ID=Physo127587;Parent=Physo127587;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 720419 720549 . - 0 ID=Physo127587;Parent=Physo127587;rank=8 scaffold_2 . exon 720419 720549 . - . ID=Physo127587.8;Parent=Physo127587;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 720656 720766 . - 0 ID=Physo127587;Parent=Physo127587;rank=7 scaffold_2 . exon 720656 720766 . - . ID=Physo127587.7;Parent=Physo127587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 720878 720917 . - 0 ID=Physo127587;Parent=Physo127587;rank=6 scaffold_2 . exon 720878 720917 . - . ID=Physo127587.6;Parent=Physo127587;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_2 . CDS 720984 721070 . - 0 ID=Physo127587;Parent=Physo127587;rank=5 scaffold_2 . exon 720984 721070 . - . ID=Physo127587.5;Parent=Physo127587;constitutive=1;rank=5 scaffold_2 . CDS 721159 721317 . - 0 ID=Physo127587;Parent=Physo127587;rank=4 scaffold_2 . exon 721159 721317 . - . ID=Physo127587.4;Parent=Physo127587;constitutive=1;rank=4 scaffold_2 . CDS 721429 721484 . - 0 ID=Physo127587;Parent=Physo127587;rank=3 scaffold_2 . exon 721429 721484 . - . ID=Physo127587.3;Parent=Physo127587;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 721597 721665 . - 0 ID=Physo127587;Parent=Physo127587;rank=2 scaffold_2 . exon 721597 721665 . - . ID=Physo127587.2;Parent=Physo127587;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 721741 721786 . - 0 ID=Physo127587;Parent=Physo127587;rank=1 scaffold_2 . exon 721741 721786 . - . ID=Physo127587.1;Parent=Physo127587;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 722067 724265 . + . ID=Physo127588;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20164;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 722067 724265 . + . ID=Physo127588;Parent=Physo127588;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 722067 722165 . + 0 ID=Physo127588;Parent=Physo127588;rank=1 scaffold_2 . exon 722067 722165 . + . ID=Physo127588.1;Parent=Physo127588;constitutive=1;rank=1 scaffold_2 . CDS 722269 722346 . + 0 ID=Physo127588;Parent=Physo127588;rank=2 scaffold_2 . exon 722269 722346 . + . ID=Physo127588.2;Parent=Physo127588;constitutive=1;rank=2 scaffold_2 . CDS 722425 722675 . + 0 ID=Physo127588;Parent=Physo127588;rank=3 scaffold_2 . exon 722425 722675 . + . ID=Physo127588.3;Parent=Physo127588;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 722752 722830 . + 0 ID=Physo127588;Parent=Physo127588;rank=4 scaffold_2 . exon 722752 722830 . + . ID=Physo127588.4;Parent=Physo127588;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 722900 723115 . + 0 ID=Physo127588;Parent=Physo127588;rank=5 scaffold_2 . exon 722900 723115 . + . ID=Physo127588.5;Parent=Physo127588;constitutive=1;rank=5 scaffold_2 . CDS 723182 723314 . + 0 ID=Physo127588;Parent=Physo127588;rank=6 scaffold_2 . exon 723182 723314 . + . ID=Physo127588.6;Parent=Physo127588;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_2 . CDS 723387 723491 . + 0 ID=Physo127588;Parent=Physo127588;rank=7 scaffold_2 . exon 723387 723491 . + . ID=Physo127588.7;Parent=Physo127588;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 723573 723777 . + 0 ID=Physo127588;Parent=Physo127588;rank=8 scaffold_2 . exon 723573 723777 . + . ID=Physo127588.8;Parent=Physo127588;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_2 . CDS 723928 724042 . + 0 ID=Physo127588;Parent=Physo127588;rank=9 scaffold_2 . exon 723928 724042 . + . ID=Physo127588.9;Parent=Physo127588;constitutive=1;ensembl_phase=2;rank=9 scaffold_2 . CDS 724116 724265 . + 0 ID=Physo127588;Parent=Physo127588;rank=10 scaffold_2 . exon 724116 724265 . + . ID=Physo127588.10;Parent=Physo127588;constitutive=1;rank=10 scaffold_2 . repeat_region 728855 728879 . ? . description=dust scaffold_2 . repeat_region 728855 728879 . ? . description=trf scaffold_2 . repeat_region 729042 729138 . ? . description=trf scaffold_2 . repeat_region 729043 729157 . ? . description=trf scaffold_2 . repeat_region 729177 729271 . ? . description=trf scaffold_2 . repeat_region 730814 730986 . ? . description=trf scaffold_2 ensembl protein_coding_gene 728085 729377 . + . ID=Physo127590;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20166;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 728085 729377 . + . ID=Physo127590;Parent=Physo127590;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 728085 729377 . + 0 ID=Physo127590;Parent=Physo127590;rank=1 scaffold_2 . exon 728085 729377 . + . ID=Physo127590.1;Parent=Physo127590;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 730067 731515 . + . ID=Physo127591;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20167;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 730067 731515 . + . ID=Physo127591;Parent=Physo127591;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 730067 731515 . + 0 ID=Physo127591;Parent=Physo127591;rank=1 scaffold_2 . exon 730067 731515 . + . ID=Physo127591.1;Parent=Physo127591;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 732030 733814 . + . ID=Physo127592;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20168;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 732030 733814 . + . ID=Physo127592;Parent=Physo127592;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 732030 733814 . + 0 ID=Physo127592;Parent=Physo127592;rank=1 scaffold_2 . exon 732030 733814 . + . ID=Physo127592.1;Parent=Physo127592;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 734437 737378 . - . ID=Physo127593;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20169;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 734437 737378 . - . ID=Physo127593;Parent=Physo127593;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 734437 734460 . - 0 ID=Physo127593;Parent=Physo127593;rank=7 scaffold_2 . exon 734437 734460 . - . ID=Physo127593.7;Parent=Physo127593;constitutive=1;rank=7 scaffold_2 . CDS 734510 735734 . - 0 ID=Physo127593;Parent=Physo127593;rank=6 scaffold_2 . exon 734510 735734 . - . ID=Physo127593.6;Parent=Physo127593;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 735808 735962 . - 0 ID=Physo127593;Parent=Physo127593;rank=5 scaffold_2 . exon 735808 735962 . - . ID=Physo127593.5;Parent=Physo127593;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 736106 736657 . - 0 ID=Physo127593;Parent=Physo127593;rank=4 scaffold_2 . exon 736106 736657 . - . ID=Physo127593.4;Parent=Physo127593;constitutive=1;rank=4 scaffold_2 . CDS 736730 736918 . - 0 ID=Physo127593;Parent=Physo127593;rank=3 scaffold_2 . exon 736730 736918 . - . ID=Physo127593.3;Parent=Physo127593;constitutive=1;rank=3 scaffold_2 . CDS 737002 737077 . - 0 ID=Physo127593;Parent=Physo127593;rank=2 scaffold_2 . CDS 737179 737378 . - 0 ID=Physo127593;Parent=Physo127593;rank=1 scaffold_2 . biological_region 738347 738351 0.999 + . logic_name=eponine scaffold_2 . biological_region 738595 738596 0.999 - . logic_name=eponine scaffold_2 . biological_region 741343 741346 0.999 - . logic_name=eponine scaffold_2 . biological_region 741554 741560 0.999 - . logic_name=eponine scaffold_2 . biological_region 741592 741598 0.999 - . logic_name=eponine scaffold_2 . biological_region 741880 741881 0.999 - . logic_name=eponine scaffold_2 . exon 737002 737077 . - . ID=Physo127593.2;Parent=Physo127593;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . exon 737179 737378 . - . ID=Physo127593.1;Parent=Physo127593;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 737501 738658 . + . ID=Physo127594;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20170;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 737501 738658 . + . ID=Physo127594;Parent=Physo127594;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 737501 738658 . + 0 ID=Physo127594;Parent=Physo127594;rank=1 scaffold_2 . exon 737501 738658 . + . ID=Physo127594.1;Parent=Physo127594;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 739082 740013 . - . ID=Physo127595;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20171;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 739082 740013 . - . ID=Physo127595;Parent=Physo127595;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 739082 739119 . - 0 ID=Physo127595;Parent=Physo127595;rank=2 scaffold_2 . exon 739082 739119 . - . ID=Physo127595.2;Parent=Physo127595;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 739203 740013 . - 0 ID=Physo127595;Parent=Physo127595;rank=1 scaffold_2 . exon 739203 740013 . - . ID=Physo127595.1;Parent=Physo127595;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 740476 742087 . + . ID=Physo127596;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20172;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 740476 742087 . + . ID=Physo127596;Parent=Physo127596;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 740476 740700 . + 0 ID=Physo127596;Parent=Physo127596;rank=1 scaffold_2 . exon 740476 740700 . + . ID=Physo127596.1;Parent=Physo127596;constitutive=1;rank=1 scaffold_2 . CDS 740832 740966 . + 0 ID=Physo127596;Parent=Physo127596;rank=2 scaffold_2 . exon 740832 740966 . + . ID=Physo127596.2;Parent=Physo127596;constitutive=1;rank=2 scaffold_2 . CDS 741048 741587 . + 0 ID=Physo127596;Parent=Physo127596;rank=3 scaffold_2 . exon 741048 741587 . + . ID=Physo127596.3;Parent=Physo127596;constitutive=1;rank=3 scaffold_2 . CDS 741659 741973 . + 0 ID=Physo127596;Parent=Physo127596;rank=4 scaffold_2 . exon 741659 742087 . + . ID=Physo127596.4;Parent=Physo127596;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_2 ensembl protein_coding_gene 742358 752653 . + . ID=Physo127597;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20173;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 742358 752653 . + . ID=Physo127597;Parent=Physo127597;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 742358 745504 . + 0 ID=Physo127597;Parent=Physo127597;rank=1 scaffold_2 . exon 742358 745504 . + . ID=Physo127597.1;Parent=Physo127597;constitutive=1;rank=1 scaffold_2 . CDS 745835 746458 . + 0 ID=Physo127597;Parent=Physo127597;rank=2 scaffold_2 . exon 745835 746458 . + . ID=Physo127597.2;Parent=Physo127597;constitutive=1;rank=2 scaffold_2 . CDS 746516 748199 . + 0 ID=Physo127597;Parent=Physo127597;rank=3 scaffold_2 . exon 746516 748199 . + . ID=Physo127597.3;Parent=Physo127597;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 748262 748317 . + 0 ID=Physo127597;Parent=Physo127597;rank=4 scaffold_2 . CDS 748389 750010 . + 0 ID=Physo127597;Parent=Physo127597;rank=5 scaffold_2 . CDS 750091 752653 . + 0 ID=Physo127597;Parent=Physo127597;rank=6 scaffold_2 . repeat_region 753422 753469 . - . description=IS1 scaffold_2 . exon 748262 748317 . + . ID=Physo127597.4;Parent=Physo127597;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . exon 748389 750010 . + . ID=Physo127597.5;Parent=Physo127597;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . exon 750091 752653 . + . ID=Physo127597.6;Parent=Physo127597;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 ensembl protein_coding_gene 754084 756371 . + . ID=Physo127598;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20174;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 754084 756371 . + . ID=Physo127598;Parent=Physo127598;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 754084 754660 . + 0 ID=Physo127598;Parent=Physo127598;rank=1 scaffold_2 . exon 754084 754660 . + . ID=Physo127598.1;Parent=Physo127598;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 754847 755127 . + 0 ID=Physo127598;Parent=Physo127598;rank=2 scaffold_2 . exon 754847 755127 . + . ID=Physo127598.2;Parent=Physo127598;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 755155 755231 . + 0 ID=Physo127598;Parent=Physo127598;rank=3 scaffold_2 . exon 755155 755231 . + . ID=Physo127598.3;Parent=Physo127598;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 755316 755368 . + 0 ID=Physo127598;Parent=Physo127598;rank=4 scaffold_2 . exon 755316 755368 . + . ID=Physo127598.4;Parent=Physo127598;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 755468 755962 . + 0 ID=Physo127598;Parent=Physo127598;rank=5 scaffold_2 . exon 755468 755962 . + . ID=Physo127598.5;Parent=Physo127598;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 756010 756371 . + 0 ID=Physo127598;Parent=Physo127598;rank=6 scaffold_2 . exon 756010 756371 . + . ID=Physo127598.6;Parent=Physo127598;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . biological_region 757903 757907 0.999 + . logic_name=eponine scaffold_2 . biological_region 762803 762804 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 758839 759719 . + . ID=Physo108189;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20021;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 758839 759719 . + . ID=Physo108189;Parent=Physo108189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 758839 759000 . + 0 ID=Physo108189;Parent=Physo108189;rank=1 scaffold_2 . exon 758839 759000 . + . ID=Physo108189.1;Parent=Physo108189;constitutive=1;rank=1 scaffold_2 . CDS 759048 759051 . + 0 ID=Physo108189;Parent=Physo108189;rank=2 scaffold_2 . exon 759048 759051 . + . ID=Physo108189.2;Parent=Physo108189;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 759151 759214 . + 0 ID=Physo108189;Parent=Physo108189;rank=3 scaffold_2 . exon 759151 759214 . + . ID=Physo108189.3;Parent=Physo108189;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 759245 759595 . + 0 ID=Physo108189;Parent=Physo108189;rank=4 scaffold_2 . exon 759245 759595 . + . ID=Physo108189.4;Parent=Physo108189;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_2 . CDS 759626 759719 . + 0 ID=Physo108189;Parent=Physo108189;rank=5 scaffold_2 . exon 759626 759719 . + . ID=Physo108189.5;Parent=Physo108189;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 ensembl protein_coding_gene 757793 758149 . + . ID=Physo127599;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20175;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 757793 758149 . + . ID=Physo127599;Parent=Physo127599;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 757793 758149 . + 0 ID=Physo127599;Parent=Physo127599;rank=1 scaffold_2 . exon 757793 758149 . + . ID=Physo127599.1;Parent=Physo127599;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 763948 766847 . - . ID=Physo127601;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20177;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 763948 766847 . - . ID=Physo127601;Parent=Physo127601;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 763948 765095 . - 0 ID=Physo127601;Parent=Physo127601;rank=4 scaffold_2 . exon 763948 765095 . - . ID=Physo127601.4;Parent=Physo127601;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 765209 765715 . - 0 ID=Physo127601;Parent=Physo127601;rank=3 scaffold_2 . exon 765209 765715 . - . ID=Physo127601.3;Parent=Physo127601;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 765788 766035 . - 0 ID=Physo127601;Parent=Physo127601;rank=2 scaffold_2 . exon 765788 766035 . - . ID=Physo127601.2;Parent=Physo127601;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 766099 766847 . - 0 ID=Physo127601;Parent=Physo127601;rank=1 scaffold_2 . exon 766099 766847 . - . ID=Physo127601.1;Parent=Physo127601;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . repeat_region 767296 767345 . ? . description=dust scaffold_2 . repeat_region 767391 767448 . ? . description=dust scaffold_2 . repeat_region 768592 768608 . ? . description=dust scaffold_2 . repeat_region 769827 769835 . ? . description=dust scaffold_2 . repeat_region 770718 770725 . ? . description=dust scaffold_2 . repeat_region 774090 774098 . ? . description=dust scaffold_2 . repeat_region 776100 776141 . ? . description=trf scaffold_2 ensembl protein_coding_gene 772201 773802 . - . ID=Physo127602;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20178;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 772201 773802 . - . ID=Physo127602;Parent=Physo127602;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 772201 773802 . - 0 ID=Physo127602;Parent=Physo127602;rank=1 scaffold_2 . exon 772201 773802 . - . ID=Physo127602.1;Parent=Physo127602;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 774361 775299 . - . ID=Physo127603;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20179;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 774361 775299 . - . ID=Physo127603;Parent=Physo127603;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 774361 775299 . - 0 ID=Physo127603;Parent=Physo127603;rank=1 scaffold_2 . exon 774361 775299 . - . ID=Physo127603.1;Parent=Physo127603;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 775610 775933 . - . ID=Physo127604;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20180;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 775610 775933 . - . ID=Physo127604;Parent=Physo127604;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 775610 775933 . - 0 ID=Physo127604;Parent=Physo127604;rank=1 scaffold_2 . exon 775610 775933 . - . ID=Physo127604.1;Parent=Physo127604;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 776509 777153 . + . ID=Physo127605;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20181;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 776509 777153 . + . ID=Physo127605;Parent=Physo127605;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 776509 777153 . + 0 ID=Physo127605;Parent=Physo127605;rank=1 scaffold_2 . exon 776509 777153 . + . ID=Physo127605.1;Parent=Physo127605;constitutive=1;rank=1 scaffold_2 . biological_region 776822 776828 0.999 - . logic_name=eponine scaffold_2 . biological_region 776824 776827 0.999 + . logic_name=eponine scaffold_2 . biological_region 779122 779126 0.999 + . logic_name=eponine scaffold_2 . biological_region 781371 781374 0.999 - . logic_name=eponine scaffold_2 . biological_region 781714 781715 0.999 - . logic_name=eponine scaffold_2 . biological_region 786356 786357 0.999 + . logic_name=eponine scaffold_2 . biological_region 786463 786465 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 786256 786675 . - . ID=Physo110243;biotype=protein_coding;external_name=estExt_Genewise1.C_20089;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 786256 786675 . - . ID=Physo110243;Parent=Physo110243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 786256 786288 . - . ID=Physo110243.2;Parent=Physo110243;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_2 . CDS 786258 786288 . - 0 ID=Physo110243;Parent=Physo110243;rank=2 scaffold_2 . CDS 786338 786648 . - 0 ID=Physo110243;Parent=Physo110243;rank=1 scaffold_2 . exon 786338 786675 . - . ID=Physo110243.1;Parent=Physo110243;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 777322 777939 . + . ID=Physo127606;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20182;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 777322 777939 . + . ID=Physo127606;Parent=Physo127606;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 777322 777939 . + 0 ID=Physo127606;Parent=Physo127606;rank=1 scaffold_2 . exon 777322 777939 . + . ID=Physo127606.1;Parent=Physo127606;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 778003 778680 . - . ID=Physo127607;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20183;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 778003 778680 . - . ID=Physo127607;Parent=Physo127607;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 778003 778680 . - 0 ID=Physo127607;Parent=Physo127607;rank=1 scaffold_2 . exon 778003 778680 . - . ID=Physo127607.1;Parent=Physo127607;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 783964 785358 . + . ID=Physo127608;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20184;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 783964 785358 . + . ID=Physo127608;Parent=Physo127608;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 783964 784920 . + 0 ID=Physo127608;Parent=Physo127608;rank=1 scaffold_2 . exon 783964 784920 . + . ID=Physo127608.1;Parent=Physo127608;constitutive=1;rank=1 scaffold_2 . CDS 784990 784997 . + 0 ID=Physo127608;Parent=Physo127608;rank=2 scaffold_2 . exon 784990 784997 . + . ID=Physo127608.2;Parent=Physo127608;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 785211 785358 . + 0 ID=Physo127608;Parent=Physo127608;rank=3 scaffold_2 . exon 785211 785358 . + . ID=Physo127608.3;Parent=Physo127608;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . repeat_region 786842 786852 . ? . description=dust scaffold_2 . repeat_region 791571 791594 . ? . description=dust scaffold_2 . repeat_region 795123 795130 . ? . description=dust scaffold_2 ensembl protein_coding_gene 789893 790609 . + . ID=Physo108190;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20022;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 789893 790609 . + . ID=Physo108190;Parent=Physo108190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 789893 790609 . + 0 ID=Physo108190;Parent=Physo108190;rank=1 scaffold_2 . exon 789893 790609 . + . ID=Physo108190.1;Parent=Physo108190;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 787113 787508 . - . ID=Physo127610;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20186;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 787113 787508 . - . ID=Physo127610;Parent=Physo127610;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 787113 787508 . - 0 ID=Physo127610;Parent=Physo127610;rank=1 scaffold_2 . exon 787113 787508 . - . ID=Physo127610.1;Parent=Physo127610;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 788002 788667 . + . ID=Physo127611;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20187;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 788002 788667 . + . ID=Physo127611;Parent=Physo127611;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 788002 788667 . + 0 ID=Physo127611;Parent=Physo127611;rank=1 scaffold_2 . exon 788002 788667 . + . ID=Physo127611.1;Parent=Physo127611;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 788848 789495 . + . ID=Physo127612;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20188;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 788848 789495 . + . ID=Physo127612;Parent=Physo127612;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 788848 789495 . + 0 ID=Physo127612;Parent=Physo127612;rank=1 scaffold_2 . exon 788848 789495 . + . ID=Physo127612.1;Parent=Physo127612;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 792595 794436 . + . ID=Physo127614;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20190;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 792595 794436 . + . ID=Physo127614;Parent=Physo127614;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 792595 794415 . + 0 ID=Physo127614;Parent=Physo127614;rank=1 scaffold_2 . exon 792595 794436 . + . ID=Physo127614.1;Parent=Physo127614;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 795241 802285 . - . ID=Physo127615;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20191;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 795241 802285 . - . ID=Physo127615;Parent=Physo127615;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 795241 796684 . - 0 ID=Physo127615;Parent=Physo127615;rank=7 scaffold_2 . exon 795241 796684 . - . ID=Physo127615.7;Parent=Physo127615;constitutive=1;ensembl_phase=2;rank=7 scaffold_2 . CDS 796870 797068 . - 0 ID=Physo127615;Parent=Physo127615;rank=6 scaffold_2 . CDS 797309 797711 . - 0 ID=Physo127615;Parent=Physo127615;rank=5 scaffold_2 . CDS 797790 799994 . - 0 ID=Physo127615;Parent=Physo127615;rank=4 scaffold_2 . CDS 800102 800614 . - 0 ID=Physo127615;Parent=Physo127615;rank=3 scaffold_2 . CDS 800752 801963 . - 0 ID=Physo127615;Parent=Physo127615;rank=2 scaffold_2 . CDS 802049 802285 . - 0 ID=Physo127615;Parent=Physo127615;rank=1 scaffold_2 . biological_region 801789 801793 0.999 - . logic_name=eponine scaffold_2 . biological_region 802183 802183 0.999 + . logic_name=eponine scaffold_2 . repeat_region 803285 803499 . ? . description=trf scaffold_2 . biological_region 805558 805558 0.999 + . logic_name=eponine scaffold_2 . exon 796870 797068 . - . ID=Physo127615.6;Parent=Physo127615;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_2 . exon 797309 797711 . - . ID=Physo127615.5;Parent=Physo127615;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_2 . exon 797790 799994 . - . ID=Physo127615.4;Parent=Physo127615;constitutive=1;rank=4 scaffold_2 . exon 800102 800614 . - . ID=Physo127615.3;Parent=Physo127615;constitutive=1;rank=3 scaffold_2 . exon 800752 801963 . - . ID=Physo127615.2;Parent=Physo127615;constitutive=1;rank=2 scaffold_2 . exon 802049 802285 . - . ID=Physo127615.1;Parent=Physo127615;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 802775 807486 . + . ID=Physo127616;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20192;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 802775 807486 . + . ID=Physo127616;Parent=Physo127616;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 802775 806644 . + 0 ID=Physo127616;Parent=Physo127616;rank=1 scaffold_2 . exon 802775 806644 . + . ID=Physo127616.1;Parent=Physo127616;constitutive=1;rank=1 scaffold_2 . CDS 806762 807369 . + 0 ID=Physo127616;Parent=Physo127616;rank=2 scaffold_2 . CDS 807456 807486 . + 0 ID=Physo127616;Parent=Physo127616;rank=3 scaffold_2 . exon 806762 807369 . + . ID=Physo127616.2;Parent=Physo127616;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . exon 807456 807486 . + . ID=Physo127616.3;Parent=Physo127616;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 811748 813643 . - . ID=Physo127617;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20193;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 811748 813643 . - . ID=Physo127617;Parent=Physo127617;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 811748 813643 . - . ID=Physo127617.1;Parent=Physo127617;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 812021 812635 . - 0 ID=Physo127617;Parent=Physo127617;rank=1 scaffold_2 ensembl protein_coding_gene 816527 816886 . + . ID=Physo127618;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20194;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 816527 816886 . + . ID=Physo127618;Parent=Physo127618;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 816527 816886 . + 0 ID=Physo127618;Parent=Physo127618;rank=1 scaffold_2 . exon 816527 816886 . + . ID=Physo127618.1;Parent=Physo127618;constitutive=1;rank=1 scaffold_2 . repeat_region 816656 816674 . ? . description=dust scaffold_2 . repeat_region 818028 818077 . ? . description=dust scaffold_2 . repeat_region 820170 820212 . ? . description=dust scaffold_2 . repeat_region 823923 823972 . ? . description=dust scaffold_2 . repeat_region 824000 824030 . ? . description=trf scaffold_2 . repeat_region 824035 824072 . ? . description=trf scaffold_2 . repeat_region 824439 824465 . ? . description=trf scaffold_2 . repeat_region 825930 825979 . ? . description=dust scaffold_2 . biological_region 826270 826272 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 824133 825734 . - . ID=Physo108191;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20023;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 824133 825734 . - . ID=Physo108191;Parent=Physo108191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 824133 825734 . - 0 ID=Physo108191;Parent=Physo108191;rank=1 scaffold_2 . exon 824133 825734 . - . ID=Physo108191.1;Parent=Physo108191;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 820065 820424 . + . ID=Physo127619;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20195;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 820065 820424 . + . ID=Physo127619;Parent=Physo127619;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 820065 820424 . + 0 ID=Physo127619;Parent=Physo127619;rank=1 scaffold_2 . exon 820065 820424 . + . ID=Physo127619.1;Parent=Physo127619;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 826054 827208 . - . ID=Physo127621;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20197;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 826054 827208 . - . ID=Physo127621;Parent=Physo127621;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 826054 826291 . - 0 ID=Physo127621;Parent=Physo127621;rank=4 scaffold_2 . exon 826054 826291 . - . ID=Physo127621.4;Parent=Physo127621;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 826680 826691 . - 0 ID=Physo127621;Parent=Physo127621;rank=3 scaffold_2 . CDS 826780 826890 . - 0 ID=Physo127621;Parent=Physo127621;rank=2 scaffold_2 . CDS 827171 827208 . - 0 ID=Physo127621;Parent=Physo127621;rank=1 scaffold_2 . exon 826680 826691 . - . ID=Physo127621.3;Parent=Physo127621;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2 . exon 826780 826890 . - . ID=Physo127621.2;Parent=Physo127621;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . exon 827171 827208 . - . ID=Physo127621.1;Parent=Physo127621;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 828549 829107 . + . ID=Physo127622;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20198;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 828549 829107 . + . ID=Physo127622;Parent=Physo127622;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 828549 828974 . + 0 ID=Physo127622;Parent=Physo127622;rank=1 scaffold_2 . exon 828549 829107 . + . ID=Physo127622.1;Parent=Physo127622;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 831386 833692 . - . ID=Physo127623;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20199;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 831386 833692 . - . ID=Physo127623;Parent=Physo127623;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 831386 831394 . - 0 ID=Physo127623;Parent=Physo127623;rank=3 scaffold_2 . exon 831386 831394 . - . ID=Physo127623.3;Parent=Physo127623;constitutive=1;rank=3 scaffold_2 . CDS 831583 833476 . - 0 ID=Physo127623;Parent=Physo127623;rank=2 scaffold_2 . exon 831583 833476 . - . ID=Physo127623.2;Parent=Physo127623;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 833526 833692 . - 0 ID=Physo127623;Parent=Physo127623;rank=1 scaffold_2 . exon 833526 833692 . - . ID=Physo127623.1;Parent=Physo127623;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 834634 835754 . + . ID=Physo127624;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20200;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 834634 835754 . + . ID=Physo127624;Parent=Physo127624;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 834634 834674 . + 0 ID=Physo127624;Parent=Physo127624;rank=1 scaffold_2 . exon 834634 834674 . + . ID=Physo127624.1;Parent=Physo127624;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 834731 834759 . + 0 ID=Physo127624;Parent=Physo127624;rank=2 scaffold_2 . exon 834731 834759 . + . ID=Physo127624.2;Parent=Physo127624;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 835093 835754 . + 0 ID=Physo127624;Parent=Physo127624;rank=3 scaffold_2 . exon 835093 835754 . + . ID=Physo127624.3;Parent=Physo127624;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . repeat_region 836579 836614 . ? . description=trf scaffold_2 . biological_region 837396 837400 0.999 + . logic_name=eponine scaffold_2 . repeat_region 838980 839003 . ? . description=dust scaffold_2 . biological_region 841842 841844 0.999 - . logic_name=eponine scaffold_2 . biological_region 842180 842185 0.999 + . logic_name=eponine scaffold_2 . repeat_region 844211 844218 . ? . description=dust scaffold_2 ensembl protein_coding_gene 844768 844920 . + . ID=Physo110260;biotype=protein_coding;external_name=estExt_Genewise1.C_20106;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 844768 844920 . + . ID=Physo110260;Parent=Physo110260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 844768 844920 . + . ID=Physo110260.1;Parent=Physo110260;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 844769 844900 . + 0 ID=Physo110260;Parent=Physo110260;rank=1 scaffold_2 ensembl protein_coding_gene 837666 838091 . + . ID=Physo127625;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20201;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 837666 838091 . + . ID=Physo127625;Parent=Physo127625;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 837666 838091 . + 0 ID=Physo127625;Parent=Physo127625;rank=1 scaffold_2 . exon 837666 838091 . + . ID=Physo127625.1;Parent=Physo127625;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 839910 842019 . + . ID=Physo127626;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20202;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 839910 842019 . + . ID=Physo127626;Parent=Physo127626;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 839910 840056 . + 0 ID=Physo127626;Parent=Physo127626;rank=1 scaffold_2 . exon 839910 840056 . + . ID=Physo127626.1;Parent=Physo127626;constitutive=1;rank=1 scaffold_2 . CDS 840373 840894 . + 0 ID=Physo127626;Parent=Physo127626;rank=2 scaffold_2 . exon 840373 840894 . + . ID=Physo127626.2;Parent=Physo127626;constitutive=1;rank=2 scaffold_2 . CDS 841135 841140 . + 0 ID=Physo127626;Parent=Physo127626;rank=3 scaffold_2 . exon 841135 841140 . + . ID=Physo127626.3;Parent=Physo127626;constitutive=1;rank=3 scaffold_2 . CDS 841410 841510 . + 0 ID=Physo127626;Parent=Physo127626;rank=4 scaffold_2 . exon 841410 841510 . + . ID=Physo127626.4;Parent=Physo127626;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 841604 841684 . + 0 ID=Physo127626;Parent=Physo127626;rank=5 scaffold_2 . exon 841604 841684 . + . ID=Physo127626.5;Parent=Physo127626;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_2 . CDS 841804 841870 . + 0 ID=Physo127626;Parent=Physo127626;rank=6 scaffold_2 . exon 841804 841870 . + . ID=Physo127626.6;Parent=Physo127626;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 841966 842019 . + 0 ID=Physo127626;Parent=Physo127626;rank=7 scaffold_2 . exon 841966 842019 . + . ID=Physo127626.7;Parent=Physo127626;constitutive=1;rank=7 scaffold_2 ensembl protein_coding_gene 845368 845949 . + . ID=Physo127627;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20203;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 845368 845949 . + . ID=Physo127627;Parent=Physo127627;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 845368 845456 . + 0 ID=Physo127627;Parent=Physo127627;rank=1 scaffold_2 . exon 845368 845456 . + . ID=Physo127627.1;Parent=Physo127627;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 845493 845749 . + 0 ID=Physo127627;Parent=Physo127627;rank=2 scaffold_2 . exon 845493 845749 . + . ID=Physo127627.2;Parent=Physo127627;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 845819 845949 . + 0 ID=Physo127627;Parent=Physo127627;rank=3 scaffold_2 . exon 845819 845949 . + . ID=Physo127627.3;Parent=Physo127627;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 ensembl protein_coding_gene 850367 851187 . + . ID=Physo127628;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20204;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 850367 851187 . + . ID=Physo127628;Parent=Physo127628;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 850367 850606 . + 0 ID=Physo127628;Parent=Physo127628;rank=1 scaffold_2 . exon 850367 850606 . + . ID=Physo127628.1;Parent=Physo127628;constitutive=1;rank=1 scaffold_2 . CDS 850664 850817 . + 0 ID=Physo127628;Parent=Physo127628;rank=2 scaffold_2 . exon 850664 850817 . + . ID=Physo127628.2;Parent=Physo127628;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 850841 851187 . + 0 ID=Physo127628;Parent=Physo127628;rank=3 scaffold_2 . exon 850841 851187 . + . ID=Physo127628.3;Parent=Physo127628;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 ensembl protein_coding_gene 851886 852577 . - . ID=Physo127629;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20205;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 851886 852577 . - . ID=Physo127629;Parent=Physo127629;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 851886 851936 . - 0 ID=Physo127629;Parent=Physo127629;rank=3 scaffold_2 . exon 851886 851936 . - . ID=Physo127629.3;Parent=Physo127629;constitutive=1;rank=3 scaffold_2 . CDS 851959 852045 . - 0 ID=Physo127629;Parent=Physo127629;rank=2 scaffold_2 . exon 851959 852045 . - . ID=Physo127629.2;Parent=Physo127629;constitutive=1;rank=2 scaffold_2 . CDS 852119 852577 . - 0 ID=Physo127629;Parent=Physo127629;rank=1 scaffold_2 . exon 852119 852577 . - . ID=Physo127629.1;Parent=Physo127629;constitutive=1;rank=1 scaffold_2 . repeat_region 859077 859084 . ? . description=dust scaffold_2 . repeat_region 860740 860750 . ? . description=dust scaffold_2 . biological_region 863194 863195 0.999 + . logic_name=eponine scaffold_2 . repeat_region 863328 863337 . ? . description=dust scaffold_2 . repeat_region 863930 864164 . ? . description=trf scaffold_2 . biological_region 864036 864039 0.999 + . logic_name=eponine scaffold_2 . repeat_region 864100 864236 . ? . description=trf scaffold_2 . biological_region 864100 864103 0.999 + . logic_name=eponine scaffold_2 . repeat_region 864127 864275 . ? . description=trf scaffold_2 . biological_region 864285 864288 0.999 - . logic_name=eponine scaffold_2 . biological_region 864509 864511 0.999 + . logic_name=eponine scaffold_2 . repeat_region 865075 865084 . ? . description=dust scaffold_2 . repeat_region 865434 865441 . ? . description=dust scaffold_2 . biological_region 866005 866008 0.999 - . logic_name=eponine scaffold_2 . biological_region 866065 866065 0.999 - . logic_name=eponine scaffold_2 . biological_region 866229 866231 0.999 + . logic_name=eponine scaffold_2 . repeat_region 866281 866378 . ? . description=trf scaffold_2 ensembl protein_coding_gene 872139 875425 . + . ID=Physo127630;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20206;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 872139 875425 . + . ID=Physo127630;Parent=Physo127630;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 872139 872370 . + 0 ID=Physo127630;Parent=Physo127630;rank=1 scaffold_2 . exon 872139 872370 . + . ID=Physo127630.1;Parent=Physo127630;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 872437 872688 . + 0 ID=Physo127630;Parent=Physo127630;rank=2 scaffold_2 . exon 872437 872688 . + . ID=Physo127630.2;Parent=Physo127630;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 873088 873774 . + 0 ID=Physo127630;Parent=Physo127630;rank=3 scaffold_2 . exon 873088 873774 . + . ID=Physo127630.3;Parent=Physo127630;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 873824 874196 . + 0 ID=Physo127630;Parent=Physo127630;rank=4 scaffold_2 . exon 873824 874196 . + . ID=Physo127630.4;Parent=Physo127630;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 874279 874623 . + 0 ID=Physo127630;Parent=Physo127630;rank=5 scaffold_2 . exon 874279 874623 . + . ID=Physo127630.5;Parent=Physo127630;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_2 . CDS 874698 875139 . + 0 ID=Physo127630;Parent=Physo127630;rank=6 scaffold_2 . exon 874698 875139 . + . ID=Physo127630.6;Parent=Physo127630;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 875170 875250 . + 0 ID=Physo127630;Parent=Physo127630;rank=7 scaffold_2 . exon 875170 875250 . + . ID=Physo127630.7;Parent=Physo127630;constitutive=1;rank=7 scaffold_2 . CDS 875411 875425 . + 0 ID=Physo127630;Parent=Physo127630;rank=8 scaffold_2 . exon 875411 875425 . + . ID=Physo127630.8;Parent=Physo127630;constitutive=1;rank=8 scaffold_2 ensembl protein_coding_gene 876023 877993 . + . ID=Physo127631;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20207;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 876023 877993 . + . ID=Physo127631;Parent=Physo127631;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 876023 876933 . + 0 ID=Physo127631;Parent=Physo127631;rank=1 scaffold_2 . exon 876023 876933 . + . ID=Physo127631.1;Parent=Physo127631;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 877005 877194 . + 0 ID=Physo127631;Parent=Physo127631;rank=2 scaffold_2 . CDS 877257 877520 . + 0 ID=Physo127631;Parent=Physo127631;rank=3 scaffold_2 . CDS 877646 877993 . + 0 ID=Physo127631;Parent=Physo127631;rank=4 scaffold_2 . biological_region 877467 877467 0.999 - . logic_name=eponine scaffold_2 . repeat_region 880135 880142 . ? . description=dust scaffold_2 . repeat_region 881196 881266 . - . description=Polinton-1_PI scaffold_2 . repeat_region 881347 881354 . ? . description=dust scaffold_2 . repeat_region 885401 885456 . ? . description=trf scaffold_2 . repeat_region 885442 885533 . ? . description=trf scaffold_2 . exon 877005 877194 . + . ID=Physo127631.2;Parent=Physo127631;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . exon 877257 877520 . + . ID=Physo127631.3;Parent=Physo127631;constitutive=1;rank=3 scaffold_2 . exon 877646 877993 . + . ID=Physo127631.4;Parent=Physo127631;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 878117 879682 . - . ID=Physo127632;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20208;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 878117 879682 . - . ID=Physo127632;Parent=Physo127632;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 878117 879682 . - 0 ID=Physo127632;Parent=Physo127632;rank=1 scaffold_2 . exon 878117 879682 . - . ID=Physo127632.1;Parent=Physo127632;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 880494 881015 . - . ID=Physo127633;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20209;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 880494 881015 . - . ID=Physo127633;Parent=Physo127633;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 880494 881015 . - 0 ID=Physo127633;Parent=Physo127633;rank=1 scaffold_2 . exon 880494 881015 . - . ID=Physo127633.1;Parent=Physo127633;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 885278 886748 . + . ID=Physo127634;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20210;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 885278 886748 . + . ID=Physo127634;Parent=Physo127634;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 885278 885997 . + 0 ID=Physo127634;Parent=Physo127634;rank=1 scaffold_2 . exon 885278 885997 . + . ID=Physo127634.1;Parent=Physo127634;constitutive=1;rank=1 scaffold_2 . CDS 886134 886433 . + 0 ID=Physo127634;Parent=Physo127634;rank=2 scaffold_2 . exon 886134 886433 . + . ID=Physo127634.2;Parent=Physo127634;constitutive=1;rank=2 scaffold_2 . CDS 886461 886748 . + 0 ID=Physo127634;Parent=Physo127634;rank=3 scaffold_2 . exon 886461 886748 . + . ID=Physo127634.3;Parent=Physo127634;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 889392 892739 . + . ID=Physo127635;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20211;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 889392 892739 . + . ID=Physo127635;Parent=Physo127635;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 889392 892739 . + 0 ID=Physo127635;Parent=Physo127635;rank=1 scaffold_2 . exon 889392 892739 . + . ID=Physo127635.1;Parent=Physo127635;constitutive=1;rank=1 scaffold_2 . biological_region 899181 899183 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 898997 900790 . - . ID=Physo127636;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20212;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 898997 900790 . - . ID=Physo127636;Parent=Physo127636;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 898997 900790 . - 0 ID=Physo127636;Parent=Physo127636;rank=1 scaffold_2 . exon 898997 900790 . - . ID=Physo127636.1;Parent=Physo127636;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 903534 907664 . - . ID=Physo127637;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20213;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 903534 907664 . - . ID=Physo127637;Parent=Physo127637;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 903534 904375 . - 0 ID=Physo127637;Parent=Physo127637;rank=4 scaffold_2 . exon 903534 904375 . - . ID=Physo127637.4;Parent=Physo127637;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 904457 904570 . - 0 ID=Physo127637;Parent=Physo127637;rank=3 scaffold_2 . exon 904457 904570 . - . ID=Physo127637.3;Parent=Physo127637;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 904645 905695 . - 0 ID=Physo127637;Parent=Physo127637;rank=2 scaffold_2 . exon 904645 905695 . - . ID=Physo127637.2;Parent=Physo127637;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 906762 907664 . - 0 ID=Physo127637;Parent=Physo127637;rank=1 scaffold_2 ensembl protein_coding_gene 907804 908485 . + . ID=Physo110262;biotype=protein_coding;external_name=estExt_Genewise1.C_20108;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 907804 908485 . + . ID=Physo110262;Parent=Physo110262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 907804 908154 . + . ID=Physo110262.1;Parent=Physo110262;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 907837 908154 . + 0 ID=Physo110262;Parent=Physo110262;rank=1 scaffold_2 . CDS 908238 908342 . + 0 ID=Physo110262;Parent=Physo110262;rank=2 scaffold_2 . exon 908238 908342 . + . ID=Physo110262.2;Parent=Physo110262;constitutive=1;rank=2 scaffold_2 . CDS 908410 908484 . + 0 ID=Physo110262;Parent=Physo110262;rank=3 scaffold_2 . exon 908410 908485 . + . ID=Physo110262.3;Parent=Physo110262;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_2 . exon 906762 907664 . - . ID=Physo127637.1;Parent=Physo127637;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 908618 910784 . + . ID=Physo127638;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20214;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 908618 910784 . + . ID=Physo127638;Parent=Physo127638;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 908618 908673 . + . ID=Physo127638.1;Parent=Physo127638;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . exon 908748 908861 . + . ID=Physo127638.2;Parent=Physo127638;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_2 . exon 908944 909041 . + . ID=Physo127638.3;Parent=Physo127638;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=3 scaffold_2 . CDS 908983 909041 . + 0 ID=Physo127638;Parent=Physo127638;rank=1 scaffold_2 . CDS 909113 909348 . + 0 ID=Physo127638;Parent=Physo127638;rank=2 scaffold_2 . exon 909113 909348 . + . ID=Physo127638.4;Parent=Physo127638;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 909434 909498 . + 0 ID=Physo127638;Parent=Physo127638;rank=3 scaffold_2 . exon 909434 909498 . + . ID=Physo127638.5;Parent=Physo127638;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 909569 909618 . + 0 ID=Physo127638;Parent=Physo127638;rank=4 scaffold_2 . exon 909569 909618 . + . ID=Physo127638.6;Parent=Physo127638;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_2 . CDS 909856 909896 . + 0 ID=Physo127638;Parent=Physo127638;rank=5 scaffold_2 . exon 909856 909896 . + . ID=Physo127638.7;Parent=Physo127638;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_2 . CDS 909952 910004 . + 0 ID=Physo127638;Parent=Physo127638;rank=6 scaffold_2 . exon 909952 910004 . + . ID=Physo127638.8;Parent=Physo127638;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 910381 910779 . + 0 ID=Physo127638;Parent=Physo127638;rank=7 scaffold_2 . exon 910381 910784 . + . ID=Physo127638.9;Parent=Physo127638;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_2 ensembl protein_coding_gene 910870 912138 . - . ID=Physo127639;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20215;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 910870 912138 . - . ID=Physo127639;Parent=Physo127639;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 910870 911142 . - . ID=Physo127639.5;Parent=Physo127639;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_2 . CDS 911064 911142 . - 0 ID=Physo127639;Parent=Physo127639;rank=5 scaffold_2 . CDS 911166 911178 . - 0 ID=Physo127639;Parent=Physo127639;rank=4 scaffold_2 . exon 911166 911178 . - . ID=Physo127639.4;Parent=Physo127639;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 911208 911442 . - 0 ID=Physo127639;Parent=Physo127639;rank=3 scaffold_2 . exon 911208 911442 . - . ID=Physo127639.3;Parent=Physo127639;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 911510 911871 . - 0 ID=Physo127639;Parent=Physo127639;rank=2 scaffold_2 . exon 911510 911871 . - . ID=Physo127639.2;Parent=Physo127639;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 911959 912073 . - 0 ID=Physo127639;Parent=Physo127639;rank=1 scaffold_2 . exon 911959 912138 . - . ID=Physo127639.1;Parent=Physo127639;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 915307 916209 . + . ID=Physo127640;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20216;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 915307 916209 . + . ID=Physo127640;Parent=Physo127640;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 915307 915403 . + . ID=Physo127640.1;Parent=Physo127640;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 . CDS 915309 915403 . + 0 ID=Physo127640;Parent=Physo127640;rank=1 scaffold_2 . CDS 915496 915638 . + 0 ID=Physo127640;Parent=Physo127640;rank=2 scaffold_2 . exon 915496 915638 . + . ID=Physo127640.2;Parent=Physo127640;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 915732 915852 . + 0 ID=Physo127640;Parent=Physo127640;rank=3 scaffold_2 . exon 915732 915852 . + . ID=Physo127640.3;Parent=Physo127640;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 915945 916110 . + 0 ID=Physo127640;Parent=Physo127640;rank=4 scaffold_2 . exon 915945 916209 . + . ID=Physo127640.4;Parent=Physo127640;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_2 . biological_region 917227 917228 0.999 - . logic_name=eponine scaffold_2 . biological_region 917322 917328 0.999 - . logic_name=eponine scaffold_2 . biological_region 918838 918841 0.999 - . logic_name=eponine scaffold_2 . biological_region 919472 919475 0.999 - . logic_name=eponine scaffold_2 . repeat_region 922018 922037 . ? . description=dust scaffold_2 . biological_region 924080 924085 0.999 - . logic_name=eponine scaffold_2 . biological_region 924375 924376 0.999 + . logic_name=eponine scaffold_2 . biological_region 924505 924507 0.999 - . logic_name=eponine scaffold_2 . biological_region 924540 924543 0.999 - . logic_name=eponine scaffold_2 . biological_region 924563 924570 0.999 - . logic_name=eponine scaffold_2 . repeat_region 925462 925480 . ? . description=dust scaffold_2 ensembl protein_coding_gene 917002 918746 . - . ID=Physo108192;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20024;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 917002 918746 . - . ID=Physo108192;Parent=Physo108192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 917002 918746 . - . ID=Physo108192.1;Parent=Physo108192;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 917130 918683 . - 0 ID=Physo108192;Parent=Physo108192;rank=1 scaffold_2 ensembl protein_coding_gene 921746 922293 . + . ID=Physo108193;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20025;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 921746 922293 . + . ID=Physo108193;Parent=Physo108193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 921746 921864 . + 0 ID=Physo108193;Parent=Physo108193;rank=1 scaffold_2 . exon 921746 921864 . + . ID=Physo108193.1;Parent=Physo108193;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 921944 921994 . + 0 ID=Physo108193;Parent=Physo108193;rank=2 scaffold_2 . exon 921944 921994 . + . ID=Physo108193.2;Parent=Physo108193;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 922079 922139 . + 0 ID=Physo108193;Parent=Physo108193;rank=3 scaffold_2 . exon 922079 922293 . + . ID=Physo108193.3;Parent=Physo108193;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 922452 924523 . - . ID=Physo108194;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20026;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 922452 924523 . - . ID=Physo108194;Parent=Physo108194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 922452 922573 . - 0 ID=Physo108194;Parent=Physo108194;rank=7 scaffold_2 . exon 922452 922573 . - . ID=Physo108194.7;Parent=Physo108194;constitutive=1;ensembl_phase=1;rank=7 scaffold_2 . CDS 922604 922624 . - 0 ID=Physo108194;Parent=Physo108194;rank=6 scaffold_2 . exon 922604 922624 . - . ID=Physo108194.6;Parent=Physo108194;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 922700 922900 . - 0 ID=Physo108194;Parent=Physo108194;rank=5 scaffold_2 . exon 922700 922900 . - . ID=Physo108194.5;Parent=Physo108194;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 922978 923904 . - 0 ID=Physo108194;Parent=Physo108194;rank=4 scaffold_2 . exon 922978 923904 . - . ID=Physo108194.4;Parent=Physo108194;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 923976 924072 . - 0 ID=Physo108194;Parent=Physo108194;rank=3 scaffold_2 . exon 923976 924072 . - . ID=Physo108194.3;Parent=Physo108194;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 924168 924263 . - 0 ID=Physo108194;Parent=Physo108194;rank=2 scaffold_2 . exon 924168 924263 . - . ID=Physo108194.2;Parent=Physo108194;constitutive=1;rank=2 scaffold_2 . CDS 924353 924523 . - 0 ID=Physo108194;Parent=Physo108194;rank=1 scaffold_2 . exon 924353 924523 . - . ID=Physo108194.1;Parent=Physo108194;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 925482 926189 . + . ID=Physo127644;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20220;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 925482 926189 . + . ID=Physo127644;Parent=Physo127644;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 925482 926189 . + 0 ID=Physo127644;Parent=Physo127644;rank=1 scaffold_2 . exon 925482 926189 . + . ID=Physo127644.1;Parent=Physo127644;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 926711 927277 . + . ID=Physo127645;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20221;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 926711 927277 . + . ID=Physo127645;Parent=Physo127645;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 926711 927277 . + 0 ID=Physo127645;Parent=Physo127645;rank=1 scaffold_2 . exon 926711 927277 . + . ID=Physo127645.1;Parent=Physo127645;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 929611 930990 . + . ID=Physo127646;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20222;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 929611 930990 . + . ID=Physo127646;Parent=Physo127646;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 929611 930990 . + 0 ID=Physo127646;Parent=Physo127646;rank=1 scaffold_2 . exon 929611 930990 . + . ID=Physo127646.1;Parent=Physo127646;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 932370 933462 . - . ID=Physo127647;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20223;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 932370 933462 . - . ID=Physo127647;Parent=Physo127647;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 932370 932394 . - 0 ID=Physo127647;Parent=Physo127647;rank=3 scaffold_2 . exon 932370 932394 . - . ID=Physo127647.3;Parent=Physo127647;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 932537 932597 . - 0 ID=Physo127647;Parent=Physo127647;rank=2 scaffold_2 . exon 932537 932597 . - . ID=Physo127647.2;Parent=Physo127647;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 932721 933462 . - 0 ID=Physo127647;Parent=Physo127647;rank=1 scaffold_2 . exon 932721 933462 . - . ID=Physo127647.1;Parent=Physo127647;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 934190 935221 . - . ID=Physo127648;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20224;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 934190 935221 . - . ID=Physo127648;Parent=Physo127648;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 934190 935221 . - 0 ID=Physo127648;Parent=Physo127648;rank=1 scaffold_2 . exon 934190 935221 . - . ID=Physo127648.1;Parent=Physo127648;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 935606 936941 . - . ID=Physo127649;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20225;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 935606 936941 . - . ID=Physo127649;Parent=Physo127649;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 935606 936869 . - 0 ID=Physo127649;Parent=Physo127649;rank=2 scaffold_2 . exon 935606 936869 . - . ID=Physo127649.2;Parent=Physo127649;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 936931 936941 . - 0 ID=Physo127649;Parent=Physo127649;rank=1 scaffold_2 . biological_region 936384 936386 0.999 - . logic_name=eponine scaffold_2 . biological_region 936481 936485 0.999 - . logic_name=eponine scaffold_2 . repeat_region 937817 937871 . ? . description=trf scaffold_2 . repeat_region 941122 941130 . ? . description=dust scaffold_2 . repeat_region 941356 941418 . ? . description=trf scaffold_2 . repeat_region 942276 942300 . ? . description=dust scaffold_2 . biological_region 944320 944325 0.999 + . logic_name=eponine scaffold_2 . biological_region 944364 944369 0.999 + . logic_name=eponine scaffold_2 . biological_region 944366 944372 0.999 - . logic_name=eponine scaffold_2 . biological_region 944819 944821 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 944218 944938 . + . ID=Physo108195;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20027;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 944218 944938 . + . ID=Physo108195;Parent=Physo108195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 944218 944938 . + . ID=Physo108195.1;Parent=Physo108195;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 944243 944854 . + 0 ID=Physo108195;Parent=Physo108195;rank=1 scaffold_2 . exon 936931 936941 . - . ID=Physo127649.1;Parent=Physo127649;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 942651 943797 . + . ID=Physo127650;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20226;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 942651 943797 . + . ID=Physo127650;Parent=Physo127650;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 942651 942684 . + . ID=Physo127650.1;Parent=Physo127650;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 . CDS 942653 942684 . + 0 ID=Physo127650;Parent=Physo127650;rank=1 scaffold_2 . CDS 942771 943797 . + 0 ID=Physo127650;Parent=Physo127650;rank=2 scaffold_2 . exon 942771 943797 . + . ID=Physo127650.2;Parent=Physo127650;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . repeat_region 952906 952975 . + . description=Sola3-2_PS scaffold_2 ensembl protein_coding_gene 951672 953171 . + . ID=Physo127652;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20228;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 951672 953171 . + . ID=Physo127652;Parent=Physo127652;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 951672 952043 . + 0 ID=Physo127652;Parent=Physo127652;rank=1 scaffold_2 . exon 951672 952043 . + . ID=Physo127652.1;Parent=Physo127652;constitutive=1;rank=1 scaffold_2 . CDS 952399 952541 . + 0 ID=Physo127652;Parent=Physo127652;rank=2 scaffold_2 . exon 952399 952541 . + . ID=Physo127652.2;Parent=Physo127652;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 952778 953090 . + 0 ID=Physo127652;Parent=Physo127652;rank=3 scaffold_2 . exon 952778 953090 . + . ID=Physo127652.3;Parent=Physo127652;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 953151 953171 . + 0 ID=Physo127652;Parent=Physo127652;rank=4 scaffold_2 . exon 953151 953171 . + . ID=Physo127652.4;Parent=Physo127652;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 955622 958057 . - . ID=Physo127653;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20229;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 955622 958057 . - . ID=Physo127653;Parent=Physo127653;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 955622 956382 . - 0 ID=Physo127653;Parent=Physo127653;rank=3 scaffold_2 . exon 955622 956382 . - . ID=Physo127653.3;Parent=Physo127653;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 956453 956574 . - 0 ID=Physo127653;Parent=Physo127653;rank=2 scaffold_2 . CDS 956643 958057 . - 0 ID=Physo127653;Parent=Physo127653;rank=1 scaffold_2 . repeat_region 956154 956212 . ? . description=trf scaffold_2 . repeat_region 956170 956206 . ? . description=trf scaffold_2 . biological_region 957820 957822 0.999 + . logic_name=eponine scaffold_2 . biological_region 957844 957846 0.999 + . logic_name=eponine scaffold_2 . biological_region 957873 957874 0.999 + . logic_name=eponine scaffold_2 . biological_region 957975 957976 0.999 - . logic_name=eponine scaffold_2 . biological_region 958042 958047 0.999 - . logic_name=eponine scaffold_2 . biological_region 958353 958356 0.999 + . logic_name=eponine scaffold_2 . biological_region 958378 958379 0.999 + . logic_name=eponine scaffold_2 . biological_region 958429 958432 0.999 - . logic_name=eponine scaffold_2 . biological_region 958456 958461 0.999 - . logic_name=eponine scaffold_2 . biological_region 960293 960296 0.999 + . logic_name=eponine scaffold_2 . biological_region 960316 960317 0.999 + . logic_name=eponine scaffold_2 . biological_region 960361 960364 0.999 - . logic_name=eponine scaffold_2 . biological_region 960380 960387 0.999 - . logic_name=eponine scaffold_2 . biological_region 960403 960406 0.999 - . logic_name=eponine scaffold_2 . repeat_region 960920 960942 . ? . description=dust scaffold_2 . repeat_region 960920 960942 . ? . description=trf scaffold_2 . biological_region 961271 961273 0.999 + . logic_name=eponine scaffold_2 . biological_region 961413 961417 0.999 - . logic_name=eponine scaffold_2 . biological_region 961514 961517 0.999 + . logic_name=eponine scaffold_2 . biological_region 961973 961977 0.999 + . logic_name=eponine scaffold_2 . biological_region 962030 962033 0.999 + . logic_name=eponine scaffold_2 . biological_region 962376 962380 0.999 - . logic_name=eponine scaffold_2 . biological_region 962417 962419 0.999 + . logic_name=eponine scaffold_2 . biological_region 964703 964706 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 959929 961054 . - . ID=Physo108196;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20028;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 959929 961054 . - . ID=Physo108196;Parent=Physo108196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 959929 960529 . - 0 ID=Physo108196;Parent=Physo108196;rank=3 scaffold_2 . exon 959929 960529 . - . ID=Physo108196.3;Parent=Physo108196;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 960607 960748 . - 0 ID=Physo108196;Parent=Physo108196;rank=2 scaffold_2 . exon 960607 960748 . - . ID=Physo108196.2;Parent=Physo108196;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 960837 961041 . - 0 ID=Physo108196;Parent=Physo108196;rank=1 scaffold_2 . exon 960837 961054 . - . ID=Physo108196.1;Parent=Physo108196;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_2 . exon 956453 956574 . - . ID=Physo127653.2;Parent=Physo127653;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . exon 956643 958057 . - . ID=Physo127653.1;Parent=Physo127653;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 958272 959756 . + . ID=Physo127654;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20230;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 958272 959756 . + . ID=Physo127654;Parent=Physo127654;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 958272 959756 . + 0 ID=Physo127654;Parent=Physo127654;rank=1 scaffold_2 . exon 958272 959756 . + . ID=Physo127654.1;Parent=Physo127654;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 961218 965051 . + . ID=Physo127656;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20232;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 961218 965051 . + . ID=Physo127656;Parent=Physo127656;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 961218 961620 . + 0 ID=Physo127656;Parent=Physo127656;rank=1 scaffold_2 . exon 961218 961620 . + . ID=Physo127656.1;Parent=Physo127656;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 961699 964818 . + 0 ID=Physo127656;Parent=Physo127656;rank=2 scaffold_2 . exon 961699 964818 . + . ID=Physo127656.2;Parent=Physo127656;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 964921 965051 . + 0 ID=Physo127656;Parent=Physo127656;rank=3 scaffold_2 . exon 964921 965051 . + . ID=Physo127656.3;Parent=Physo127656;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 ensembl protein_coding_gene 965326 966151 . + . ID=Physo127657;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20233;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 965326 966151 . + . ID=Physo127657;Parent=Physo127657;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 965326 965598 . + . ID=Physo127657.1;Parent=Physo127657;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 . CDS 965453 965598 . + 0 ID=Physo127657;Parent=Physo127657;rank=1 scaffold_2 . CDS 965686 965768 . + 0 ID=Physo127657;Parent=Physo127657;rank=2 scaffold_2 . exon 965686 965768 . + . ID=Physo127657.2;Parent=Physo127657;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 965840 965925 . + 0 ID=Physo127657;Parent=Physo127657;rank=3 scaffold_2 . exon 965840 965925 . + . ID=Physo127657.3;Parent=Physo127657;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 966002 966151 . + 0 ID=Physo127657;Parent=Physo127657;rank=4 scaffold_2 . exon 966002 966151 . + . ID=Physo127657.4;Parent=Physo127657;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 966532 967285 . - . ID=Physo108197;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20029;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 966532 967285 . - . ID=Physo108197;Parent=Physo108197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 966532 967242 . - 0 ID=Physo108197;Parent=Physo108197;rank=1 scaffold_2 . exon 966532 967285 . - . ID=Physo108197.1;Parent=Physo108197;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 967515 968862 . - . ID=Physo127659;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20235;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 967515 968862 . - . ID=Physo127659;Parent=Physo127659;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 967515 967611 . - 0 ID=Physo127659;Parent=Physo127659;rank=3 scaffold_2 . exon 967515 967611 . - . ID=Physo127659.3;Parent=Physo127659;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 967672 967859 . - 0 ID=Physo127659;Parent=Physo127659;rank=2 scaffold_2 . exon 967672 967859 . - . ID=Physo127659.2;Parent=Physo127659;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 967930 968862 . - 0 ID=Physo127659;Parent=Physo127659;rank=1 scaffold_2 . exon 967930 968862 . - . ID=Physo127659.1;Parent=Physo127659;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 969001 970796 . + . ID=Physo127660;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20236;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 969001 970796 . + . ID=Physo127660;Parent=Physo127660;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 969001 969324 . + 0 ID=Physo127660;Parent=Physo127660;rank=1 scaffold_2 . exon 969001 969324 . + . ID=Physo127660.1;Parent=Physo127660;constitutive=1;rank=1 scaffold_2 . CDS 969399 970796 . + 0 ID=Physo127660;Parent=Physo127660;rank=2 scaffold_2 . exon 969399 970796 . + . ID=Physo127660.2;Parent=Physo127660;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 970853 972491 . - . ID=Physo127661;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20237;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 970853 972491 . - . ID=Physo127661;Parent=Physo127661;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 970853 971865 . - . ID=Physo127661.2;Parent=Physo127661;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_2 . CDS 970954 971865 . - 0 ID=Physo127661;Parent=Physo127661;rank=2 scaffold_2 . CDS 971966 972259 . - 0 ID=Physo127661;Parent=Physo127661;rank=1 scaffold_2 . exon 971966 972491 . - . ID=Physo127661.1;Parent=Physo127661;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . biological_region 978928 978929 0.999 - . logic_name=eponine scaffold_2 . repeat_region 982941 983041 . ? . description=trf scaffold_2 . repeat_region 983056 983063 . ? . description=dust scaffold_2 . repeat_region 983491 984539 . ? . description=trf scaffold_2 . repeat_region 983491 984539 . ? . description=trf scaffold_2 . repeat_region 984540 996561 . ? . description=dust scaffold_2 ensembl protein_coding_gene 982756 997258 . - . ID=Physo127662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20238;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 982756 997258 . - . ID=Physo127662;Parent=Physo127662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 982756 984520 . - 0 ID=Physo127662;Parent=Physo127662;rank=2 scaffold_2 . exon 982756 984520 . - . ID=Physo127662.2;Parent=Physo127662;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 997236 997258 . - 0 ID=Physo127662;Parent=Physo127662;rank=1 scaffold_2 . repeat_region 984540 996561 . ? . description=dust scaffold_2 . repeat_region 998058 998302 . ? . description=trf scaffold_2 . biological_region 998166 998168 0.999 - . logic_name=eponine scaffold_2 . repeat_region 998353 998389 . ? . description=trf scaffold_2 . biological_region 998524 998525 0.999 - . logic_name=eponine scaffold_2 . biological_region 998532 998534 0.999 - . logic_name=eponine scaffold_2 . biological_region 998604 998604 0.999 + . logic_name=eponine scaffold_2 . repeat_region 998847 998943 . ? . description=trf scaffold_2 . repeat_region 1001681 1001700 . ? . description=dust scaffold_2 . repeat_region 1001681 1001700 . ? . description=trf scaffold_2 . biological_region 1001846 1001848 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1002113 1002309 . ? . description=trf scaffold_2 . repeat_region 1002137 1002193 . ? . description=dust scaffold_2 . repeat_region 1002137 1002895 . ? . description=trf scaffold_2 . repeat_region 1003295 1003346 . ? . description=trf scaffold_2 . biological_region 1003444 1003445 0.999 + . logic_name=eponine scaffold_2 . biological_region 1004821 1004823 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1005098 1005215 . ? . description=trf scaffold_2 . biological_region 1005145 1005147 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1005364 1007215 . ? . description=trf scaffold_2 . repeat_region 1005497 1005559 . ? . description=dust scaffold_2 . biological_region 1005857 1005861 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 982756 997258 . - . ID=Physo127662;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20238;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 982756 997258 . - . ID=Physo127662;Parent=Physo127662;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 982756 984520 . - 0 ID=Physo127662;Parent=Physo127662;rank=2 scaffold_2 . CDS 997236 997258 . - 0 ID=Physo127662;Parent=Physo127662;rank=1 scaffold_2 . exon 997236 997258 . - . ID=Physo127662.1;Parent=Physo127662;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 997544 999072 . + . ID=Physo127663;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20239;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 997544 999072 . + . ID=Physo127663;Parent=Physo127663;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 997544 997605 . + 0 ID=Physo127663;Parent=Physo127663;rank=1 scaffold_2 . exon 997544 997605 . + . ID=Physo127663.1;Parent=Physo127663;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 997679 998011 . + 0 ID=Physo127663;Parent=Physo127663;rank=2 scaffold_2 . exon 997679 998011 . + . ID=Physo127663.2;Parent=Physo127663;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 998105 998180 . + 0 ID=Physo127663;Parent=Physo127663;rank=3 scaffold_2 . exon 998105 998180 . + . ID=Physo127663.3;Parent=Physo127663;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 998211 998401 . + 0 ID=Physo127663;Parent=Physo127663;rank=4 scaffold_2 . exon 998211 998401 . + . ID=Physo127663.4;Parent=Physo127663;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 998443 998585 . + 0 ID=Physo127663;Parent=Physo127663;rank=5 scaffold_2 . exon 998443 998585 . + . ID=Physo127663.5;Parent=Physo127663;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 998879 999072 . + 0 ID=Physo127663;Parent=Physo127663;rank=6 scaffold_2 . exon 998879 999072 . + . ID=Physo127663.6;Parent=Physo127663;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 ensembl protein_coding_gene 1001783 1003459 . + . ID=Physo127664;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20240;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1001783 1003459 . + . ID=Physo127664;Parent=Physo127664;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1001783 1003459 . + 0 ID=Physo127664;Parent=Physo127664;rank=1 scaffold_2 . exon 1001783 1003459 . + . ID=Physo127664.1;Parent=Physo127664;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1004758 1008059 . + . ID=Physo127665;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20241;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1004758 1008059 . + . ID=Physo127665;Parent=Physo127665;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1004758 1006102 . + 0 ID=Physo127665;Parent=Physo127665;rank=1 scaffold_2 . exon 1004758 1006102 . + . ID=Physo127665.1;Parent=Physo127665;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 1006158 1006767 . + 0 ID=Physo127665;Parent=Physo127665;rank=2 scaffold_2 . CDS 1006787 1008059 . + 0 ID=Physo127665;Parent=Physo127665;rank=3 scaffold_2 . exon 1006158 1006767 . + . ID=Physo127665.2;Parent=Physo127665;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . exon 1006787 1008059 . + . ID=Physo127665.3;Parent=Physo127665;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 1009590 1012629 . + . ID=Physo127666;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20242;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1009590 1012629 . + . ID=Physo127666;Parent=Physo127666;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1009590 1010207 . + 0 ID=Physo127666;Parent=Physo127666;rank=1 scaffold_2 . exon 1009590 1010207 . + . ID=Physo127666.1;Parent=Physo127666;constitutive=1;rank=1 scaffold_2 . CDS 1010473 1012629 . + 0 ID=Physo127666;Parent=Physo127666;rank=2 scaffold_2 . exon 1010473 1012629 . + . ID=Physo127666.2;Parent=Physo127666;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 1012772 1014115 . - . ID=Physo127667;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20243;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1012772 1014115 . - . ID=Physo127667;Parent=Physo127667;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1012772 1014115 . - 0 ID=Physo127667;Parent=Physo127667;rank=1 scaffold_2 . exon 1012772 1014115 . - . ID=Physo127667.1;Parent=Physo127667;constitutive=1;rank=1 scaffold_2 . biological_region 1016271 1016274 0.999 + . logic_name=eponine scaffold_2 . biological_region 1016603 1016603 0.999 - . logic_name=eponine scaffold_2 . biological_region 1016677 1016679 0.999 - . logic_name=eponine scaffold_2 . biological_region 1016699 1016700 0.999 - . logic_name=eponine scaffold_2 . biological_region 1018433 1018436 0.999 + . logic_name=eponine scaffold_2 . biological_region 1018690 1018692 0.999 + . logic_name=eponine scaffold_2 . biological_region 1019906 1019910 0.999 - . logic_name=eponine scaffold_2 . biological_region 1021003 1021007 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1021361 1023202 . - . ID=Physo108198;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20030;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1021361 1023202 . - . ID=Physo108198;Parent=Physo108198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1021361 1022484 . - . ID=Physo108198.2;Parent=Physo108198;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1021478 1022484 . - 0 ID=Physo108198;Parent=Physo108198;rank=2 scaffold_2 . CDS 1022659 1023202 . - 0 ID=Physo108198;Parent=Physo108198;rank=1 scaffold_2 . exon 1022659 1023202 . - . ID=Physo108198.1;Parent=Physo108198;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1015823 1018333 . + . ID=Physo127668;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20244;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1015823 1018333 . + . ID=Physo127668;Parent=Physo127668;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1015823 1016716 . + 0 ID=Physo127668;Parent=Physo127668;rank=1 scaffold_2 . exon 1015823 1016716 . + . ID=Physo127668.1;Parent=Physo127668;constitutive=1;rank=1 scaffold_2 . CDS 1016791 1016889 . + 0 ID=Physo127668;Parent=Physo127668;rank=2 scaffold_2 . exon 1016791 1016889 . + . ID=Physo127668.2;Parent=Physo127668;constitutive=1;rank=2 scaffold_2 . CDS 1016977 1017094 . + 0 ID=Physo127668;Parent=Physo127668;rank=3 scaffold_2 . exon 1016977 1017094 . + . ID=Physo127668.3;Parent=Physo127668;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 1017332 1017486 . + 0 ID=Physo127668;Parent=Physo127668;rank=4 scaffold_2 . exon 1017332 1017486 . + . ID=Physo127668.4;Parent=Physo127668;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 1017551 1018333 . + 0 ID=Physo127668;Parent=Physo127668;rank=5 scaffold_2 . exon 1017551 1018333 . + . ID=Physo127668.5;Parent=Physo127668;constitutive=1;rank=5 scaffold_2 ensembl protein_coding_gene 1018506 1021271 . + . ID=Physo127669;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20245;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1018506 1021271 . + . ID=Physo127669;Parent=Physo127669;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1018506 1021271 . + 0 ID=Physo127669;Parent=Physo127669;rank=1 scaffold_2 . exon 1018506 1021271 . + . ID=Physo127669.1;Parent=Physo127669;constitutive=1;rank=1 scaffold_2 . repeat_region 1026225 1026377 . ? . description=trf scaffold_2 . repeat_region 1028886 1028901 . ? . description=dust scaffold_2 . repeat_region 1031724 1031748 . ? . description=dust scaffold_2 . repeat_region 1031724 1031748 . ? . description=trf scaffold_2 . repeat_region 1032423 1032458 . ? . description=trf scaffold_2 . repeat_region 1033003 1033034 . ? . description=dust scaffold_2 . repeat_region 1033003 1033034 . ? . description=trf scaffold_2 ensembl protein_coding_gene 1029345 1030367 . + . ID=Physo127671;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20247;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1029345 1030367 . + . ID=Physo127671;Parent=Physo127671;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1029345 1030367 . + 0 ID=Physo127671;Parent=Physo127671;rank=1 scaffold_2 . exon 1029345 1030367 . + . ID=Physo127671.1;Parent=Physo127671;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1030522 1032072 . - . ID=Physo127672;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20248;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1030522 1032072 . - . ID=Physo127672;Parent=Physo127672;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1030522 1030638 . - 0 ID=Physo127672;Parent=Physo127672;rank=7 scaffold_2 . exon 1030522 1030638 . - . ID=Physo127672.7;Parent=Physo127672;constitutive=1;rank=7 scaffold_2 . CDS 1030791 1030866 . - 0 ID=Physo127672;Parent=Physo127672;rank=6 scaffold_2 . exon 1030791 1030866 . - . ID=Physo127672.6;Parent=Physo127672;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 1030936 1031012 . - 0 ID=Physo127672;Parent=Physo127672;rank=5 scaffold_2 . exon 1030936 1031012 . - . ID=Physo127672.5;Parent=Physo127672;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . CDS 1031100 1031168 . - 0 ID=Physo127672;Parent=Physo127672;rank=4 scaffold_2 . exon 1031100 1031168 . - . ID=Physo127672.4;Parent=Physo127672;constitutive=1;rank=4 scaffold_2 . CDS 1031260 1031718 . - 0 ID=Physo127672;Parent=Physo127672;rank=3 scaffold_2 . exon 1031260 1031718 . - . ID=Physo127672.3;Parent=Physo127672;constitutive=1;rank=3 scaffold_2 . CDS 1031815 1031929 . - 0 ID=Physo127672;Parent=Physo127672;rank=2 scaffold_2 . exon 1031815 1031929 . - . ID=Physo127672.2;Parent=Physo127672;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1031999 1032063 . - 0 ID=Physo127672;Parent=Physo127672;rank=1 scaffold_2 . exon 1031999 1032072 . - . ID=Physo127672.1;Parent=Physo127672;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 1032186 1033076 . + . ID=Physo127673;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20249;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1032186 1033076 . + . ID=Physo127673;Parent=Physo127673;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1032186 1033076 . + . ID=Physo127673.1;Parent=Physo127673;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1032336 1033076 . + 0 ID=Physo127673;Parent=Physo127673;rank=1 scaffold_2 ensembl protein_coding_gene 1037448 1039157 . - . ID=Physo127674;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20250;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1037448 1039157 . - . ID=Physo127674;Parent=Physo127674;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1037448 1039157 . - 0 ID=Physo127674;Parent=Physo127674;rank=1 scaffold_2 . exon 1037448 1039157 . - . ID=Physo127674.1;Parent=Physo127674;constitutive=1;rank=1 scaffold_2 . repeat_region 1048410 1048422 . ? . description=dust scaffold_2 . biological_region 1050715 1050717 0.999 - . logic_name=eponine scaffold_2 . biological_region 1051934 1051934 0.999 - . logic_name=eponine scaffold_2 . biological_region 1055047 1055052 0.999 + . logic_name=eponine scaffold_2 . biological_region 1055122 1055122 0.999 + . logic_name=eponine scaffold_2 . biological_region 1055307 1055307 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1051768 1055211 . - . ID=Physo108199;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20031;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1051768 1055211 . - . ID=Physo108199;Parent=Physo108199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1051768 1052190 . - 0 ID=Physo108199;Parent=Physo108199;rank=2 scaffold_2 . exon 1051768 1052190 . - . ID=Physo108199.2;Parent=Physo108199;constitutive=1;rank=2 scaffold_2 . CDS 1052221 1055211 . - 0 ID=Physo108199;Parent=Physo108199;rank=1 scaffold_2 . exon 1052221 1055211 . - . ID=Physo108199.1;Parent=Physo108199;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1048434 1051590 . - . ID=Physo127675;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20251;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1048434 1051590 . - . ID=Physo127675;Parent=Physo127675;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1048434 1050228 . - 0 ID=Physo127675;Parent=Physo127675;rank=4 scaffold_2 . exon 1048434 1050228 . - . ID=Physo127675.4;Parent=Physo127675;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 1050527 1051151 . - 0 ID=Physo127675;Parent=Physo127675;rank=3 scaffold_2 . exon 1050527 1051151 . - . ID=Physo127675.3;Parent=Physo127675;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_2 . CDS 1051302 1051323 . - 0 ID=Physo127675;Parent=Physo127675;rank=2 scaffold_2 . exon 1051302 1051323 . - . ID=Physo127675.2;Parent=Physo127675;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 1051537 1051590 . - 0 ID=Physo127675;Parent=Physo127675;rank=1 scaffold_2 . exon 1051537 1051590 . - . ID=Physo127675.1;Parent=Physo127675;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1055556 1057058 . - . ID=Physo127677;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20253;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1055556 1057058 . - . ID=Physo127677;Parent=Physo127677;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1055556 1055721 . - 0 ID=Physo127677;Parent=Physo127677;rank=6 scaffold_2 . exon 1055556 1055721 . - . ID=Physo127677.6;Parent=Physo127677;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 1055805 1055956 . - 0 ID=Physo127677;Parent=Physo127677;rank=5 scaffold_2 . CDS 1056039 1056065 . - 0 ID=Physo127677;Parent=Physo127677;rank=4 scaffold_2 . CDS 1056166 1056228 . - 0 ID=Physo127677;Parent=Physo127677;rank=3 scaffold_2 . CDS 1056310 1056671 . - 0 ID=Physo127677;Parent=Physo127677;rank=2 scaffold_2 . CDS 1056746 1057058 . - 0 ID=Physo127677;Parent=Physo127677;rank=1 scaffold_2 . exon 1055805 1055956 . - . ID=Physo127677.5;Parent=Physo127677;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_2 . exon 1056039 1056065 . - . ID=Physo127677.4;Parent=Physo127677;constitutive=1;rank=4 scaffold_2 . exon 1056166 1056228 . - . ID=Physo127677.3;Parent=Physo127677;constitutive=1;rank=3 scaffold_2 . exon 1056310 1056671 . - . ID=Physo127677.2;Parent=Physo127677;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . exon 1056746 1057058 . - . ID=Physo127677.1;Parent=Physo127677;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1057725 1060205 . + . ID=Physo127678;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20254;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1057725 1060205 . + . ID=Physo127678;Parent=Physo127678;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1057725 1057910 . + 0 ID=Physo127678;Parent=Physo127678;rank=1 scaffold_2 . exon 1057725 1057910 . + . ID=Physo127678.1;Parent=Physo127678;constitutive=1;rank=1 scaffold_2 . CDS 1058046 1058821 . + 0 ID=Physo127678;Parent=Physo127678;rank=2 scaffold_2 . exon 1058046 1058821 . + . ID=Physo127678.2;Parent=Physo127678;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 1058954 1060205 . + 0 ID=Physo127678;Parent=Physo127678;rank=3 scaffold_2 . exon 1058954 1060205 . + . ID=Physo127678.3;Parent=Physo127678;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 1062000 1062494 . + . ID=Physo127679;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20255;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1062000 1062494 . + . ID=Physo127679;Parent=Physo127679;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1062000 1062494 . + 0 ID=Physo127679;Parent=Physo127679;rank=1 scaffold_2 . exon 1062000 1062494 . + . ID=Physo127679.1;Parent=Physo127679;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1064080 1064639 . + . ID=Physo127680;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20256;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1064080 1064639 . + . ID=Physo127680;Parent=Physo127680;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1064080 1064301 . + 0 ID=Physo127680;Parent=Physo127680;rank=1 scaffold_2 . exon 1064080 1064301 . + . ID=Physo127680.1;Parent=Physo127680;constitutive=1;rank=1 scaffold_2 . CDS 1064448 1064639 . + 0 ID=Physo127680;Parent=Physo127680;rank=2 scaffold_2 . exon 1064448 1064639 . + . ID=Physo127680.2;Parent=Physo127680;constitutive=1;rank=2 scaffold_2 . repeat_region 1067112 1067164 . ? . description=trf scaffold_2 . repeat_region 1067145 1067207 . ? . description=trf scaffold_2 . repeat_region 1067188 1067245 . ? . description=dust scaffold_2 . biological_region 1067268 1067272 0.999 + . logic_name=eponine scaffold_2 . biological_region 1067294 1067296 0.999 + . logic_name=eponine scaffold_2 . biological_region 1067312 1067315 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1068891 1068918 . ? . description=dust scaffold_2 . biological_region 1069053 1069058 0.999 - . logic_name=eponine scaffold_2 . biological_region 1069784 1069787 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1070983 1071042 . ? . description=trf scaffold_2 . repeat_region 1072489 1072580 . ? . description=trf scaffold_2 . repeat_region 1073081 1073112 . ? . description=dust scaffold_2 . repeat_region 1073083 1073112 . ? . description=trf scaffold_2 . repeat_region 1073417 1073464 . ? . description=trf scaffold_2 . repeat_region 1074391 1074411 . ? . description=trf scaffold_2 ensembl protein_coding_gene 1067139 1071589 . + . ID=Physo127681;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20257;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1067139 1071589 . + . ID=Physo127681;Parent=Physo127681;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1067139 1069261 . + 0 ID=Physo127681;Parent=Physo127681;rank=1 scaffold_2 . exon 1067139 1069261 . + . ID=Physo127681.1;Parent=Physo127681;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1069439 1069484 . + 0 ID=Physo127681;Parent=Physo127681;rank=2 scaffold_2 . exon 1069439 1069484 . + . ID=Physo127681.2;Parent=Physo127681;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1069688 1071589 . + 0 ID=Physo127681;Parent=Physo127681;rank=3 scaffold_2 . exon 1069688 1071589 . + . ID=Physo127681.3;Parent=Physo127681;constitutive=1;rank=3 scaffold_2 ensembl protein_coding_gene 1072003 1073835 . + . ID=Physo127682;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20258;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1072003 1073835 . + . ID=Physo127682;Parent=Physo127682;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1072003 1073835 . + 0 ID=Physo127682;Parent=Physo127682;rank=1 scaffold_2 . exon 1072003 1073835 . + . ID=Physo127682.1;Parent=Physo127682;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1077511 1078191 . - . ID=Physo127683;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20259;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1077511 1078191 . - . ID=Physo127683;Parent=Physo127683;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1077511 1078191 . - 0 ID=Physo127683;Parent=Physo127683;rank=1 scaffold_2 . exon 1077511 1078191 . - . ID=Physo127683.1;Parent=Physo127683;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1078820 1080319 . + . ID=Physo127684;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20260;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1078820 1080319 . + . ID=Physo127684;Parent=Physo127684;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1078820 1079065 . + 0 ID=Physo127684;Parent=Physo127684;rank=1 scaffold_2 . exon 1078820 1079065 . + . ID=Physo127684.1;Parent=Physo127684;constitutive=1;rank=1 scaffold_2 . CDS 1079165 1079239 . + 0 ID=Physo127684;Parent=Physo127684;rank=2 scaffold_2 . exon 1079165 1079239 . + . ID=Physo127684.2;Parent=Physo127684;constitutive=1;rank=2 scaffold_2 . CDS 1079319 1079882 . + 0 ID=Physo127684;Parent=Physo127684;rank=3 scaffold_2 . exon 1079319 1079882 . + . ID=Physo127684.3;Parent=Physo127684;constitutive=1;rank=3 scaffold_2 . CDS 1079993 1080319 . + 0 ID=Physo127684;Parent=Physo127684;rank=4 scaffold_2 . exon 1079993 1080319 . + . ID=Physo127684.4;Parent=Physo127684;constitutive=1;rank=4 scaffold_2 . repeat_region 1087606 1087687 . ? . description=dust scaffold_2 . repeat_region 1087622 1087680 . ? . description=trf scaffold_2 . repeat_region 1087631 1087668 . ? . description=trf scaffold_2 . repeat_region 1087633 1087680 . ? . description=trf scaffold_2 . repeat_region 1087702 1087896 . ? . description=trf scaffold_2 . repeat_region 1087709 1087794 . ? . description=dust scaffold_2 . repeat_region 1087710 1087902 . ? . description=trf scaffold_2 . repeat_region 1087844 1087904 . ? . description=trf scaffold_2 . repeat_region 1090655 1090662 . ? . description=dust scaffold_2 . biological_region 1094634 1094635 0.999 + . logic_name=eponine scaffold_2 . biological_region 1094733 1094735 0.999 + . logic_name=eponine scaffold_2 . biological_region 1094747 1094749 0.999 - . logic_name=eponine scaffold_2 . biological_region 1094766 1094769 0.999 + . logic_name=eponine scaffold_2 . biological_region 1094770 1094774 0.999 - . logic_name=eponine scaffold_2 . biological_region 1094788 1094789 0.999 + . logic_name=eponine scaffold_2 . biological_region 1094825 1094827 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1086208 1088237 . - . ID=Physo127685;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20261;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1086208 1088237 . - . ID=Physo127685;Parent=Physo127685;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1086208 1086215 . - 0 ID=Physo127685;Parent=Physo127685;rank=6 scaffold_2 . exon 1086208 1086215 . - . ID=Physo127685.6;Parent=Physo127685;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 1086274 1086408 . - 0 ID=Physo127685;Parent=Physo127685;rank=5 scaffold_2 . exon 1086274 1086408 . - . ID=Physo127685.5;Parent=Physo127685;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 1086790 1087257 . - 0 ID=Physo127685;Parent=Physo127685;rank=4 scaffold_2 . exon 1086790 1087257 . - . ID=Physo127685.4;Parent=Physo127685;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 1087334 1087964 . - 0 ID=Physo127685;Parent=Physo127685;rank=3 scaffold_2 . exon 1087334 1087964 . - . ID=Physo127685.3;Parent=Physo127685;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 1088018 1088041 . - 0 ID=Physo127685;Parent=Physo127685;rank=2 scaffold_2 . exon 1088018 1088041 . - . ID=Physo127685.2;Parent=Physo127685;constitutive=1;rank=2 scaffold_2 . CDS 1088166 1088237 . - 0 ID=Physo127685;Parent=Physo127685;rank=1 scaffold_2 . exon 1088166 1088237 . - . ID=Physo127685.1;Parent=Physo127685;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1089855 1090278 . - . ID=Physo127686;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20262;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1089855 1090278 . - . ID=Physo127686;Parent=Physo127686;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1089855 1089858 . - . ID=Physo127686.2;Parent=Physo127686;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_2 . exon 1089924 1090278 . - . ID=Physo127686.1;Parent=Physo127686;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1089927 1090277 . - 0 ID=Physo127686;Parent=Physo127686;rank=1 scaffold_2 ensembl protein_coding_gene 1100853 1101966 . + . ID=Physo110301;biotype=protein_coding;external_name=estExt_Genewise1.C_20147;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1100853 1101966 . + . ID=Physo110301;Parent=Physo110301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1100853 1101034 . + . ID=Physo110301.1;Parent=Physo110301;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1100880 1101034 . + 0 ID=Physo110301;Parent=Physo110301;rank=1 scaffold_2 . CDS 1101101 1101224 . + 0 ID=Physo110301;Parent=Physo110301;rank=2 scaffold_2 . exon 1101101 1101224 . + . ID=Physo110301.2;Parent=Physo110301;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1101323 1101403 . + 0 ID=Physo110301;Parent=Physo110301;rank=3 scaffold_2 . exon 1101323 1101403 . + . ID=Physo110301.3;Parent=Physo110301;constitutive=1;rank=3 scaffold_2 . CDS 1101468 1101555 . + 0 ID=Physo110301;Parent=Physo110301;rank=4 scaffold_2 . exon 1101468 1101555 . + . ID=Physo110301.4;Parent=Physo110301;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 1101651 1101688 . + 0 ID=Physo110301;Parent=Physo110301;rank=5 scaffold_2 . exon 1101651 1101688 . + . ID=Physo110301.5;Parent=Physo110301;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 1101763 1101822 . + 0 ID=Physo110301;Parent=Physo110301;rank=6 scaffold_2 . exon 1101763 1101966 . + . ID=Physo110301.6;Parent=Physo110301;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_2 ensembl protein_coding_gene 1099781 1100636 . - . ID=Physo127687;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20263;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1099781 1100636 . - . ID=Physo127687;Parent=Physo127687;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1099781 1100091 . - 0 ID=Physo127687;Parent=Physo127687;rank=2 scaffold_2 . exon 1099781 1100091 . - . ID=Physo127687.2;Parent=Physo127687;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1100165 1100636 . - 0 ID=Physo127687;Parent=Physo127687;rank=1 scaffold_2 . exon 1100165 1100636 . - . ID=Physo127687.1;Parent=Physo127687;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . biological_region 1106812 1106813 0.999 + . logic_name=eponine scaffold_2 . biological_region 1108693 1108695 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1109634 1109642 . ? . description=dust scaffold_2 . repeat_region 1112498 1112548 . ? . description=trf scaffold_2 . biological_region 1112916 1112917 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1113007 1113048 . ? . description=trf scaffold_2 . repeat_region 1113130 1113163 . ? . description=dust scaffold_2 . repeat_region 1113130 1113163 . ? . description=trf scaffold_2 . repeat_region 1113444 1113498 . ? . description=dust scaffold_2 . repeat_region 1113463 1113571 . ? . description=trf scaffold_2 . repeat_region 1113539 1113679 . ? . description=trf scaffold_2 . biological_region 1114160 1114166 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1112612 1114387 . + . ID=Physo127689;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20265;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1112612 1114387 . + . ID=Physo127689;Parent=Physo127689;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1112612 1114387 . + 0 ID=Physo127689;Parent=Physo127689;rank=1 scaffold_2 . exon 1112612 1114387 . + . ID=Physo127689.1;Parent=Physo127689;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1114509 1116908 . - . ID=Physo127690;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20266;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1114509 1116908 . - . ID=Physo127690;Parent=Physo127690;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1114509 1116725 . - 0 ID=Physo127690;Parent=Physo127690;rank=2 scaffold_2 . exon 1114509 1116725 . - . ID=Physo127690.2;Parent=Physo127690;constitutive=1;rank=2 scaffold_2 . CDS 1116804 1116908 . - 0 ID=Physo127690;Parent=Physo127690;rank=1 scaffold_2 . exon 1116804 1116908 . - . ID=Physo127690.1;Parent=Physo127690;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1117040 1117740 . + . ID=Physo127691;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20267;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1117040 1117740 . + . ID=Physo127691;Parent=Physo127691;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1117040 1117093 . + 0 ID=Physo127691;Parent=Physo127691;rank=1 scaffold_2 . exon 1117040 1117093 . + . ID=Physo127691.1;Parent=Physo127691;constitutive=1;rank=1 scaffold_2 . CDS 1117176 1117278 . + 0 ID=Physo127691;Parent=Physo127691;rank=2 scaffold_2 . exon 1117176 1117278 . + . ID=Physo127691.2;Parent=Physo127691;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_2 . CDS 1117348 1117739 . + 0 ID=Physo127691;Parent=Physo127691;rank=3 scaffold_2 . exon 1117348 1117740 . + . ID=Physo127691.3;Parent=Physo127691;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_2 ensembl protein_coding_gene 1117848 1119870 . - . ID=Physo127692;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20268;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1117848 1119870 . - . ID=Physo127692;Parent=Physo127692;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1117848 1118987 . - 0 ID=Physo127692;Parent=Physo127692;rank=4 scaffold_2 . exon 1117848 1118987 . - . ID=Physo127692.4;Parent=Physo127692;constitutive=1;rank=4 scaffold_2 . CDS 1119146 1119505 . - 0 ID=Physo127692;Parent=Physo127692;rank=3 scaffold_2 . exon 1119146 1119505 . - . ID=Physo127692.3;Parent=Physo127692;constitutive=1;rank=3 scaffold_2 . CDS 1119717 1119793 . - 0 ID=Physo127692;Parent=Physo127692;rank=2 scaffold_2 . exon 1119717 1119793 . - . ID=Physo127692.2;Parent=Physo127692;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1119828 1119870 . - 0 ID=Physo127692;Parent=Physo127692;rank=1 scaffold_2 . exon 1119828 1119870 . - . ID=Physo127692.1;Parent=Physo127692;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1121161 1122527 . - . ID=Physo127693;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20269;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1121161 1122527 . - . ID=Physo127693;Parent=Physo127693;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1121161 1121625 . - 0 ID=Physo127693;Parent=Physo127693;rank=3 scaffold_2 . exon 1121161 1121625 . - . ID=Physo127693.3;Parent=Physo127693;constitutive=1;rank=3 scaffold_2 . CDS 1121837 1122012 . - 0 ID=Physo127693;Parent=Physo127693;rank=2 scaffold_2 . exon 1121837 1122012 . - . ID=Physo127693.2;Parent=Physo127693;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1122116 1122527 . - 0 ID=Physo127693;Parent=Physo127693;rank=1 scaffold_2 . exon 1122116 1122527 . - . ID=Physo127693.1;Parent=Physo127693;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . biological_region 1125847 1125851 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1127584 1127632 . ? . description=trf scaffold_2 . repeat_region 1129543 1129554 . ? . description=dust scaffold_2 . repeat_region 1129988 1130204 . ? . description=trf scaffold_2 . repeat_region 1130007 1130204 . ? . description=trf scaffold_2 . biological_region 1130527 1130527 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1133798 1133806 . ? . description=dust scaffold_2 . repeat_region 1134098 1134148 . ? . description=dust scaffold_2 . biological_region 1134782 1134783 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1134232 1135896 . + . ID=Physo127694;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20270;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1134232 1135896 . + . ID=Physo127694;Parent=Physo127694;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1134232 1135896 . + 0 ID=Physo127694;Parent=Physo127694;rank=1 scaffold_2 . exon 1134232 1135896 . + . ID=Physo127694.1;Parent=Physo127694;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1137354 1139176 . + . ID=Physo127695;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20271;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1137354 1139176 . + . ID=Physo127695;Parent=Physo127695;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1137354 1137382 . + 0 ID=Physo127695;Parent=Physo127695;rank=1 scaffold_2 . exon 1137354 1137382 . + . ID=Physo127695.1;Parent=Physo127695;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1137481 1137606 . + 0 ID=Physo127695;Parent=Physo127695;rank=2 scaffold_2 . exon 1137481 1137606 . + . ID=Physo127695.2;Parent=Physo127695;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 1137680 1137750 . + 0 ID=Physo127695;Parent=Physo127695;rank=3 scaffold_2 . exon 1137680 1137750 . + . ID=Physo127695.3;Parent=Physo127695;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 1137834 1137866 . + 0 ID=Physo127695;Parent=Physo127695;rank=4 scaffold_2 . exon 1137834 1137866 . + . ID=Physo127695.4;Parent=Physo127695;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 1137947 1138080 . + 0 ID=Physo127695;Parent=Physo127695;rank=5 scaffold_2 . exon 1137947 1138080 . + . ID=Physo127695.5;Parent=Physo127695;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 1138158 1138337 . + 0 ID=Physo127695;Parent=Physo127695;rank=6 scaffold_2 . exon 1138158 1138337 . + . ID=Physo127695.6;Parent=Physo127695;constitutive=1;rank=6 scaffold_2 . CDS 1138423 1138686 . + 0 ID=Physo127695;Parent=Physo127695;rank=7 scaffold_2 . exon 1138423 1138686 . + . ID=Physo127695.7;Parent=Physo127695;constitutive=1;rank=7 scaffold_2 . CDS 1138768 1138998 . + 0 ID=Physo127695;Parent=Physo127695;rank=8 scaffold_2 . exon 1138768 1139176 . + . ID=Physo127695.8;Parent=Physo127695;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_2 ensembl protein_coding_gene 1140238 1140719 . - . ID=Physo127696;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20272;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1140238 1140719 . - . ID=Physo127696;Parent=Physo127696;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1140238 1140417 . - 0 ID=Physo127696;Parent=Physo127696;rank=3 scaffold_2 . exon 1140238 1140417 . - . ID=Physo127696.3;Parent=Physo127696;constitutive=1;rank=3 scaffold_2 . CDS 1140503 1140589 . - 0 ID=Physo127696;Parent=Physo127696;rank=2 scaffold_2 . exon 1140503 1140589 . - . ID=Physo127696.2;Parent=Physo127696;constitutive=1;rank=2 scaffold_2 . CDS 1140639 1140719 . - 0 ID=Physo127696;Parent=Physo127696;rank=1 scaffold_2 . exon 1140639 1140719 . - . ID=Physo127696.1;Parent=Physo127696;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1141102 1143278 . + . ID=Physo127697;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20273;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1141102 1143278 . + . ID=Physo127697;Parent=Physo127697;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1141102 1141241 . + 0 ID=Physo127697;Parent=Physo127697;rank=1 scaffold_2 . exon 1141102 1141241 . + . ID=Physo127697.1;Parent=Physo127697;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1141336 1143127 . + 0 ID=Physo127697;Parent=Physo127697;rank=2 scaffold_2 . exon 1141336 1143278 . + . ID=Physo127697.2;Parent=Physo127697;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_2 ensembl protein_coding_gene 1143638 1145689 . + . ID=Physo127698;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20274;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1143638 1145689 . + . ID=Physo127698;Parent=Physo127698;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1143638 1143804 . + 0 ID=Physo127698;Parent=Physo127698;rank=1 scaffold_2 . exon 1143638 1143804 . + . ID=Physo127698.1;Parent=Physo127698;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1143876 1143914 . + 0 ID=Physo127698;Parent=Physo127698;rank=2 scaffold_2 . exon 1143876 1143914 . + . ID=Physo127698.2;Parent=Physo127698;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 1144003 1145689 . + 0 ID=Physo127698;Parent=Physo127698;rank=3 scaffold_2 . exon 1144003 1145689 . + . ID=Physo127698.3;Parent=Physo127698;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . repeat_region 1152733 1152745 . ? . description=dust scaffold_2 . repeat_region 1152956 1152967 . ? . description=dust scaffold_2 ensembl protein_coding_gene 1154850 1155538 . + . ID=Physo127699;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20275;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1154850 1155538 . + . ID=Physo127699;Parent=Physo127699;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1154850 1154956 . + 0 ID=Physo127699;Parent=Physo127699;rank=1 scaffold_2 . exon 1154850 1154956 . + . ID=Physo127699.1;Parent=Physo127699;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1155040 1155538 . + 0 ID=Physo127699;Parent=Physo127699;rank=2 scaffold_2 . exon 1155040 1155538 . + . ID=Physo127699.2;Parent=Physo127699;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . biological_region 1156269 1156269 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1159035 1159062 . ? . description=trf scaffold_2 . repeat_region 1159817 1159840 . ? . description=trf scaffold_2 . repeat_region 1159934 1160048 . ? . description=trf scaffold_2 . repeat_region 1160569 1160621 . ? . description=trf scaffold_2 . repeat_region 1160569 1160621 . ? . description=trf scaffold_2 . repeat_region 1160643 1160663 . ? . description=trf scaffold_2 . repeat_region 1161296 1161320 . ? . description=trf scaffold_2 . biological_region 1161446 1161446 0.999 - . logic_name=eponine scaffold_2 . biological_region 1161923 1161924 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1162733 1162969 . ? . description=trf scaffold_2 ensembl protein_coding_gene 1157606 1159157 . - . ID=Physo127700;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20276;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1157606 1159157 . - . ID=Physo127700;Parent=Physo127700;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1157606 1158004 . - 0 ID=Physo127700;Parent=Physo127700;rank=3 scaffold_2 . exon 1157606 1158004 . - . ID=Physo127700.3;Parent=Physo127700;constitutive=1;rank=3 scaffold_2 . CDS 1158033 1158207 . - 0 ID=Physo127700;Parent=Physo127700;rank=2 scaffold_2 . exon 1158033 1158207 . - . ID=Physo127700.2;Parent=Physo127700;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1158340 1159157 . - 0 ID=Physo127700;Parent=Physo127700;rank=1 scaffold_2 . exon 1158340 1159157 . - . ID=Physo127700.1;Parent=Physo127700;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 1159632 1161122 . - . ID=Physo127701;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20277;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1159632 1161122 . - . ID=Physo127701;Parent=Physo127701;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1159632 1161122 . - 0 ID=Physo127701;Parent=Physo127701;rank=1 scaffold_2 . exon 1159632 1161122 . - . ID=Physo127701.1;Parent=Physo127701;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1161326 1162024 . + . ID=Physo127702;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20278;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1161326 1162024 . + . ID=Physo127702;Parent=Physo127702;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1161326 1162024 . + 0 ID=Physo127702;Parent=Physo127702;rank=1 scaffold_2 . exon 1161326 1162024 . + . ID=Physo127702.1;Parent=Physo127702;constitutive=1;rank=1 scaffold_2 . repeat_region 1170318 1170325 . ? . description=dust scaffold_2 ensembl protein_coding_gene 1167680 1168543 . - . ID=Physo127703;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20279;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1167680 1168543 . - . ID=Physo127703;Parent=Physo127703;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1167680 1168543 . - 0 ID=Physo127703;Parent=Physo127703;rank=1 scaffold_2 . exon 1167680 1168543 . - . ID=Physo127703.1;Parent=Physo127703;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1171689 1172759 . - . ID=Physo127704;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20280;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1171689 1172759 . - . ID=Physo127704;Parent=Physo127704;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1171689 1172759 . - 0 ID=Physo127704;Parent=Physo127704;rank=1 scaffold_2 . exon 1171689 1172759 . - . ID=Physo127704.1;Parent=Physo127704;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1173830 1176695 . - . ID=Physo127705;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20281;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1173830 1176695 . - . ID=Physo127705;Parent=Physo127705;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1173830 1174432 . - 0 ID=Physo127705;Parent=Physo127705;rank=3 scaffold_2 . exon 1173830 1174432 . - . ID=Physo127705.4;Parent=Physo127705;constitutive=1;rank=4 scaffold_2 . CDS 1174512 1174757 . - 0 ID=Physo127705;Parent=Physo127705;rank=2 scaffold_2 . exon 1174512 1174757 . - . ID=Physo127705.3;Parent=Physo127705;constitutive=1;rank=3 scaffold_2 . CDS 1174834 1174836 . - 0 ID=Physo127705;Parent=Physo127705;rank=1 scaffold_2 . exon 1174834 1174899 . - . ID=Physo127705.2;Parent=Physo127705;constitutive=1;ensembl_phase=-1;rank=2 scaffold_2 . biological_region 1176468 1176475 0.999 - . logic_name=eponine scaffold_2 . biological_region 1176525 1176533 0.999 + . logic_name=eponine scaffold_2 . biological_region 1176627 1176629 0.999 - . logic_name=eponine scaffold_2 . biological_region 1182467 1182472 0.999 + . logic_name=eponine scaffold_2 . biological_region 1183122 1183129 0.999 + . logic_name=eponine scaffold_2 . biological_region 1183198 1183201 0.999 + . logic_name=eponine scaffold_2 . biological_region 1183259 1183260 0.999 - . logic_name=eponine scaffold_2 . biological_region 1183784 1183784 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1182906 1185144 . - . ID=Physo108201;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20033;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1182906 1185144 . - . ID=Physo108201;Parent=Physo108201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1182906 1185144 . - . ID=Physo108201.1;Parent=Physo108201;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_2 . CDS 1183054 1185144 . - 0 ID=Physo108201;Parent=Physo108201;rank=1 scaffold_2 . exon 1176356 1176695 . - . ID=Physo127705.1;Parent=Physo127705;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 1176920 1177782 . + . ID=Physo127706;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20282;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1176920 1177782 . + . ID=Physo127706;Parent=Physo127706;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1176920 1177010 . + . ID=Physo127706.1;Parent=Physo127706;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1176933 1177010 . + 0 ID=Physo127706;Parent=Physo127706;rank=1 scaffold_2 . CDS 1177095 1177189 . + 0 ID=Physo127706;Parent=Physo127706;rank=2 scaffold_2 . exon 1177095 1177189 . + . ID=Physo127706.2;Parent=Physo127706;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 1177270 1177393 . + 0 ID=Physo127706;Parent=Physo127706;rank=3 scaffold_2 . exon 1177270 1177393 . + . ID=Physo127706.3;Parent=Physo127706;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 1177478 1177729 . + 0 ID=Physo127706;Parent=Physo127706;rank=4 scaffold_2 . exon 1177478 1177782 . + . ID=Physo127706.4;Parent=Physo127706;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_2 ensembl protein_coding_gene 1177798 1182779 . - . ID=Physo127707;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20283;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1177798 1182779 . - . ID=Physo127707;Parent=Physo127707;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1177798 1178052 . - 0 ID=Physo127707;Parent=Physo127707;rank=7 scaffold_2 . exon 1177798 1178052 . - . ID=Physo127707.7;Parent=Physo127707;constitutive=1;rank=7 scaffold_2 . CDS 1178129 1178212 . - 0 ID=Physo127707;Parent=Physo127707;rank=6 scaffold_2 . exon 1178129 1178212 . - . ID=Physo127707.6;Parent=Physo127707;constitutive=1;rank=6 scaffold_2 . CDS 1178280 1178360 . - 0 ID=Physo127707;Parent=Physo127707;rank=5 scaffold_2 . exon 1178280 1178360 . - . ID=Physo127707.5;Parent=Physo127707;constitutive=1;rank=5 scaffold_2 . CDS 1178431 1178913 . - 0 ID=Physo127707;Parent=Physo127707;rank=4 scaffold_2 . exon 1178431 1178913 . - . ID=Physo127707.4;Parent=Physo127707;constitutive=1;rank=4 scaffold_2 . CDS 1178946 1178981 . - 0 ID=Physo127707;Parent=Physo127707;rank=3 scaffold_2 . exon 1178946 1178981 . - . ID=Physo127707.3;Parent=Physo127707;constitutive=1;rank=3 scaffold_2 . CDS 1179115 1181922 . - 0 ID=Physo127707;Parent=Physo127707;rank=2 scaffold_2 . exon 1179115 1181922 . - . ID=Physo127707.2;Parent=Physo127707;constitutive=1;rank=2 scaffold_2 . CDS 1182015 1182779 . - 0 ID=Physo127707;Parent=Physo127707;rank=1 scaffold_2 . exon 1182015 1182779 . - . ID=Physo127707.1;Parent=Physo127707;constitutive=1;rank=1 scaffold_2 . repeat_region 1185162 1185174 . ? . description=dust scaffold_2 . repeat_region 1186893 1186912 . ? . description=trf scaffold_2 . repeat_region 1189724 1189744 . ? . description=trf scaffold_2 . repeat_region 1190779 1190840 . + . description=Polinton-1_PI scaffold_2 ensembl protein_coding_gene 1186297 1186812 . + . ID=Physo127709;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20285;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1186297 1186812 . + . ID=Physo127709;Parent=Physo127709;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1186297 1186812 . + . ID=Physo127709.1;Parent=Physo127709;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1186324 1186812 . + 0 ID=Physo127709;Parent=Physo127709;rank=1 scaffold_2 ensembl protein_coding_gene 1187431 1188333 . - . ID=Physo127710;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20286;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1187431 1188333 . - . ID=Physo127710;Parent=Physo127710;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1187431 1188333 . - 0 ID=Physo127710;Parent=Physo127710;rank=1 scaffold_2 . exon 1187431 1188333 . - . ID=Physo127710.1;Parent=Physo127710;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1188619 1189479 . + . ID=Physo127711;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20287;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1188619 1189479 . + . ID=Physo127711;Parent=Physo127711;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1188619 1189479 . + 0 ID=Physo127711;Parent=Physo127711;rank=1 scaffold_2 . exon 1188619 1189479 . + . ID=Physo127711.1;Parent=Physo127711;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1189741 1190676 . - . ID=Physo127712;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20288;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1189741 1190676 . - . ID=Physo127712;Parent=Physo127712;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1189741 1190676 . - 0 ID=Physo127712;Parent=Physo127712;rank=1 scaffold_2 . exon 1189741 1190676 . - . ID=Physo127712.1;Parent=Physo127712;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1190944 1194196 . + . ID=Physo127713;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20289;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1190944 1194196 . + . ID=Physo127713;Parent=Physo127713;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1190944 1194196 . + . ID=Physo127713.1;Parent=Physo127713;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1191092 1194196 . + 0 ID=Physo127713;Parent=Physo127713;rank=1 scaffold_2 ensembl protein_coding_gene 1194283 1194822 . - . ID=Physo127714;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20290;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1194283 1194822 . - . ID=Physo127714;Parent=Physo127714;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1194283 1194618 . - 0 ID=Physo127714;Parent=Physo127714;rank=2 scaffold_2 . exon 1194283 1194618 . - . ID=Physo127714.2;Parent=Physo127714;constitutive=1;rank=2 scaffold_2 . CDS 1194688 1194822 . - 0 ID=Physo127714;Parent=Physo127714;rank=1 scaffold_2 . exon 1194688 1194822 . - . ID=Physo127714.1;Parent=Physo127714;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1195126 1196090 . + . ID=Physo127715;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20291;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1195126 1196090 . + . ID=Physo127715;Parent=Physo127715;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1195126 1196056 . + 0 ID=Physo127715;Parent=Physo127715;rank=1 scaffold_2 . exon 1195126 1196056 . + . ID=Physo127715.1;Parent=Physo127715;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 1196086 1196090 . + 0 ID=Physo127715;Parent=Physo127715;rank=2 scaffold_2 . exon 1196086 1196090 . + . ID=Physo127715.2;Parent=Physo127715;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 1199568 1200291 . - . ID=Physo127716;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20292;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1199568 1200291 . - . ID=Physo127716;Parent=Physo127716;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1199568 1199839 . - 0 ID=Physo127716;Parent=Physo127716;rank=2 scaffold_2 . exon 1199568 1199839 . - . ID=Physo127716.2;Parent=Physo127716;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1199985 1200291 . - 0 ID=Physo127716;Parent=Physo127716;rank=1 scaffold_2 . exon 1199985 1200291 . - . ID=Physo127716.1;Parent=Physo127716;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . biological_region 1207084 1207085 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1210640 1210802 . ? . description=trf scaffold_2 ensembl protein_coding_gene 1206831 1207505 . + . ID=Physo127717;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20293;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1206831 1207505 . + . ID=Physo127717;Parent=Physo127717;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1206831 1207505 . + 0 ID=Physo127717;Parent=Physo127717;rank=1 scaffold_2 . exon 1206831 1207505 . + . ID=Physo127717.1;Parent=Physo127717;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1209183 1209638 . + . ID=Physo127718;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20294;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1209183 1209638 . + . ID=Physo127718;Parent=Physo127718;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1209183 1209638 . + 0 ID=Physo127718;Parent=Physo127718;rank=1 scaffold_2 . exon 1209183 1209638 . + . ID=Physo127718.1;Parent=Physo127718;constitutive=1;rank=1 scaffold_2 . repeat_region 1216667 1216675 . ? . description=dust scaffold_2 . repeat_region 1221391 1221398 . ? . description=dust scaffold_2 ensembl protein_coding_gene 1216474 1220753 . - . ID=Physo127719;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20295;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1216474 1220753 . - . ID=Physo127719;Parent=Physo127719;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1216474 1216596 . - 0 ID=Physo127719;Parent=Physo127719;rank=6 scaffold_2 . exon 1216474 1216596 . - . ID=Physo127719.6;Parent=Physo127719;constitutive=1;rank=6 scaffold_2 . CDS 1216683 1217207 . - 0 ID=Physo127719;Parent=Physo127719;rank=5 scaffold_2 . exon 1216683 1217207 . - . ID=Physo127719.5;Parent=Physo127719;constitutive=1;rank=5 scaffold_2 . CDS 1217519 1217748 . - 0 ID=Physo127719;Parent=Physo127719;rank=4 scaffold_2 . exon 1217519 1217748 . - . ID=Physo127719.4;Parent=Physo127719;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 1217818 1218457 . - 0 ID=Physo127719;Parent=Physo127719;rank=3 scaffold_2 . exon 1217818 1218457 . - . ID=Physo127719.3;Parent=Physo127719;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 1219118 1219819 . - 0 ID=Physo127719;Parent=Physo127719;rank=2 scaffold_2 . exon 1219118 1219819 . - . ID=Physo127719.2;Parent=Physo127719;constitutive=1;rank=2 scaffold_2 . CDS 1220097 1220753 . - 0 ID=Physo127719;Parent=Physo127719;rank=1 scaffold_2 . exon 1220097 1220753 . - . ID=Physo127719.1;Parent=Physo127719;constitutive=1;rank=1 scaffold_2 . repeat_region 1225015 1225063 . ? . description=trf scaffold_2 . repeat_region 1226045 1226244 . ? . description=trf scaffold_2 . repeat_region 1226046 1226244 . ? . description=trf scaffold_2 . repeat_region 1226589 1226672 . ? . description=trf scaffold_2 . biological_region 1226930 1226932 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1229757 1229807 . ? . description=trf scaffold_2 . repeat_region 1229757 1229809 . ? . description=trf scaffold_2 . repeat_region 1229870 1229907 . ? . description=trf scaffold_2 . biological_region 1230124 1230126 0.999 - . logic_name=eponine scaffold_2 . biological_region 1231974 1231978 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1234215 1234265 . ? . description=trf scaffold_2 . repeat_region 1234215 1234267 . ? . description=trf scaffold_2 . repeat_region 1234328 1234365 . ? . description=trf scaffold_2 ensembl protein_coding_gene 1229967 1234068 . - . ID=Physo127720;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20296;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1229967 1234068 . - . ID=Physo127720;Parent=Physo127720;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1229967 1231427 . - 0 ID=Physo127720;Parent=Physo127720;rank=3 scaffold_2 . exon 1229967 1231427 . - . ID=Physo127720.3;Parent=Physo127720;constitutive=1;rank=3 scaffold_2 . CDS 1231492 1231564 . - 0 ID=Physo127720;Parent=Physo127720;rank=2 scaffold_2 . exon 1231492 1231564 . - . ID=Physo127720.2;Parent=Physo127720;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1231625 1234068 . - 0 ID=Physo127720;Parent=Physo127720;rank=1 scaffold_2 . exon 1231625 1234068 . - . ID=Physo127720.1;Parent=Physo127720;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 1239453 1241089 . + . ID=Physo110323;biotype=protein_coding;external_name=estExt_Genewise1.C_20169;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1239453 1241089 . + . ID=Physo110323;Parent=Physo110323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1239453 1240907 . + 0 ID=Physo110323;Parent=Physo110323;rank=1 scaffold_2 . exon 1239453 1240907 . + . ID=Physo110323.1;Parent=Physo110323;constitutive=1;rank=1 scaffold_2 . CDS 1240979 1241089 . + 0 ID=Physo110323;Parent=Physo110323;rank=2 scaffold_2 . exon 1240979 1241089 . + . ID=Physo110323.2;Parent=Physo110323;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 1237466 1239048 . + . ID=Physo127721;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20297;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1237466 1239048 . + . ID=Physo127721;Parent=Physo127721;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1237466 1237505 . + 0 ID=Physo127721;Parent=Physo127721;rank=1 scaffold_2 . exon 1237466 1237505 . + . ID=Physo127721.1;Parent=Physo127721;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 1238077 1238327 . + 0 ID=Physo127721;Parent=Physo127721;rank=2 scaffold_2 . exon 1238077 1238327 . + . ID=Physo127721.2;Parent=Physo127721;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1238353 1238583 . + 0 ID=Physo127721;Parent=Physo127721;rank=3 scaffold_2 . exon 1238353 1238583 . + . ID=Physo127721.3;Parent=Physo127721;constitutive=1;rank=3 scaffold_2 . CDS 1238707 1238797 . + 0 ID=Physo127721;Parent=Physo127721;rank=4 scaffold_2 . exon 1238707 1238797 . + . ID=Physo127721.4;Parent=Physo127721;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 1238858 1239048 . + 0 ID=Physo127721;Parent=Physo127721;rank=5 scaffold_2 . exon 1238858 1239048 . + . ID=Physo127721.5;Parent=Physo127721;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 ensembl protein_coding_gene 1241554 1243898 . - . ID=Physo127723;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20299;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1241554 1243898 . - . ID=Physo127723;Parent=Physo127723;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1241554 1241744 . - 0 ID=Physo127723;Parent=Physo127723;rank=2 scaffold_2 . exon 1241554 1241744 . - . ID=Physo127723.2;Parent=Physo127723;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1241822 1243898 . - 0 ID=Physo127723;Parent=Physo127723;rank=1 scaffold_2 . exon 1241822 1243898 . - . ID=Physo127723.1;Parent=Physo127723;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . biological_region 1245800 1245803 0.999 + . logic_name=eponine scaffold_2 . biological_region 1246190 1246193 0.999 + . logic_name=eponine scaffold_2 . biological_region 1246238 1246238 0.999 - . logic_name=eponine scaffold_2 . biological_region 1246302 1246304 0.999 - . logic_name=eponine scaffold_2 . biological_region 1246333 1246337 0.999 - . logic_name=eponine scaffold_2 . biological_region 1246957 1246959 0.999 + . logic_name=eponine scaffold_2 . biological_region 1247328 1247332 0.999 + . logic_name=eponine scaffold_2 . biological_region 1247380 1247384 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1247422 1247518 . ? . description=trf scaffold_2 . biological_region 1248813 1248817 0.999 - . logic_name=eponine scaffold_2 . biological_region 1248814 1248819 0.999 + . logic_name=eponine scaffold_2 . biological_region 1248841 1248848 0.999 - . logic_name=eponine scaffold_2 . biological_region 1249511 1249516 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1250346 1266451 . ? . description=dust scaffold_2 ensembl protein_coding_gene 1245484 1250134 . + . ID=Physo127724;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20300;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1245484 1250134 . + . ID=Physo127724;Parent=Physo127724;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1245484 1246390 . + 0 ID=Physo127724;Parent=Physo127724;rank=1 scaffold_2 . exon 1245484 1246390 . + . ID=Physo127724.1;Parent=Physo127724;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 1246483 1246501 . + 0 ID=Physo127724;Parent=Physo127724;rank=2 scaffold_2 . exon 1246483 1246501 . + . ID=Physo127724.2;Parent=Physo127724;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 1246533 1247278 . + 0 ID=Physo127724;Parent=Physo127724;rank=3 scaffold_2 . exon 1246533 1247278 . + . ID=Physo127724.3;Parent=Physo127724;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 1247410 1247642 . + 0 ID=Physo127724;Parent=Physo127724;rank=4 scaffold_2 . exon 1247410 1247642 . + . ID=Physo127724.4;Parent=Physo127724;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . CDS 1247712 1248083 . + 0 ID=Physo127724;Parent=Physo127724;rank=5 scaffold_2 . exon 1247712 1248083 . + . ID=Physo127724.5;Parent=Physo127724;constitutive=1;rank=5 scaffold_2 . CDS 1248128 1249228 . + 0 ID=Physo127724;Parent=Physo127724;rank=6 scaffold_2 . exon 1248128 1249228 . + . ID=Physo127724.6;Parent=Physo127724;constitutive=1;rank=6 scaffold_2 . CDS 1249257 1250102 . + 0 ID=Physo127724;Parent=Physo127724;rank=7 scaffold_2 . exon 1249257 1250102 . + . ID=Physo127724.7;Parent=Physo127724;constitutive=1;rank=7 scaffold_2 . CDS 1250126 1250134 . + 0 ID=Physo127724;Parent=Physo127724;rank=8 scaffold_2 . exon 1250126 1250134 . + . ID=Physo127724.8;Parent=Physo127724;constitutive=1;rank=8 scaffold_2 . repeat_region 1250346 1266451 . ? . description=dust scaffold_2 . biological_region 1266700 1266704 0.999 - . logic_name=eponine scaffold_2 . biological_region 1266707 1266711 0.999 - . logic_name=eponine scaffold_2 . biological_region 1267183 1267185 0.999 - . logic_name=eponine scaffold_2 . biological_region 1268126 1268129 0.999 + . logic_name=eponine scaffold_2 . biological_region 1270282 1270283 0.999 - . logic_name=eponine scaffold_2 . biological_region 1270888 1270890 0.999 - . logic_name=eponine scaffold_2 . biological_region 1270919 1270919 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1271626 1271633 . ? . description=dust scaffold_2 . biological_region 1271817 1271818 0.999 + . logic_name=eponine scaffold_2 . biological_region 1273405 1273405 0.999 - . logic_name=eponine scaffold_2 . biological_region 1273427 1273429 0.999 - . logic_name=eponine scaffold_2 . biological_region 1273479 1273484 0.999 + . logic_name=eponine scaffold_2 . biological_region 1273615 1273618 0.999 + . logic_name=eponine scaffold_2 . biological_region 1273659 1273664 0.999 + . logic_name=eponine scaffold_2 . biological_region 1273733 1273738 0.999 - . logic_name=eponine scaffold_2 . biological_region 1274037 1274040 0.999 - . logic_name=eponine scaffold_2 ensembl tRNA_gene 1269411 1269483 . - . ID=EPrPSOG00000000137;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_2 ensembl transcript 1269411 1269483 . - . ID=EPrPSOT00000000137;Parent=EPrPSOG00000000137;biotype=tRNA;logic_name=ncrna_eg scaffold_2 ensembl tRNA_gene 1268702 1268774 . - . ID=EPrPSOG00000000255;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_2 ensembl transcript 1268702 1268774 . - . ID=EPrPSOT00000000255;Parent=EPrPSOG00000000255;biotype=tRNA;logic_name=ncrna_eg scaffold_2 . exon 1269411 1269483 . - . ID=EPrPSOE00000000137;Parent=EPrPSOT00000000137;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . exon 1268702 1268774 . - . ID=EPrPSOE00000000255;Parent=EPrPSOT00000000255;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1267298 1268422 . - . ID=Physo108202;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20034;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1267298 1268422 . - . ID=Physo108202;Parent=Physo108202;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1267298 1268422 . - 0 ID=Physo108202;Parent=Physo108202;rank=1 scaffold_2 . exon 1267298 1268422 . - . ID=Physo108202.1;Parent=Physo108202;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1269786 1271114 . + . ID=Physo110337;biotype=protein_coding;external_name=estExt_Genewise1.C_20183;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1269786 1271114 . + . ID=Physo110337;Parent=Physo110337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1269786 1270484 . + 0 ID=Physo110337;Parent=Physo110337;rank=1 scaffold_2 . exon 1269786 1270484 . + . ID=Physo110337.1;Parent=Physo110337;constitutive=1;rank=1 scaffold_2 . CDS 1270527 1271114 . + 0 ID=Physo110337;Parent=Physo110337;rank=2 scaffold_2 . exon 1270527 1271114 . + . ID=Physo110337.2;Parent=Physo110337;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 1271787 1273735 . - . ID=Physo127727;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20303;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1271787 1273735 . - . ID=Physo127727;Parent=Physo127727;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1271787 1271964 . - 0 ID=Physo127727;Parent=Physo127727;rank=2 scaffold_2 . exon 1271787 1271964 . - . ID=Physo127727.2;Parent=Physo127727;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1272036 1273735 . - 0 ID=Physo127727;Parent=Physo127727;rank=1 scaffold_2 . exon 1272036 1273735 . - . ID=Physo127727.1;Parent=Physo127727;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 1273926 1274659 . + . ID=Physo127728;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20304;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1273926 1274659 . + . ID=Physo127728;Parent=Physo127728;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1273926 1274337 . + . ID=Physo127728.1;Parent=Physo127728;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1273937 1274337 . + 0 ID=Physo127728;Parent=Physo127728;rank=1 scaffold_2 . CDS 1274428 1274551 . + 0 ID=Physo127728;Parent=Physo127728;rank=2 scaffold_2 . exon 1274428 1274659 . + . ID=Physo127728.2;Parent=Physo127728;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_2 ensembl protein_coding_gene 1281540 1282688 . + . ID=Physo108204;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20036;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1281540 1282688 . + . ID=Physo108204;Parent=Physo108204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1281540 1281655 . + . ID=Physo108204.1;Parent=Physo108204;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1281545 1281655 . + 0 ID=Physo108204;Parent=Physo108204;rank=1 scaffold_2 . CDS 1281750 1281850 . + 0 ID=Physo108204;Parent=Physo108204;rank=2 scaffold_2 . exon 1281750 1281850 . + . ID=Physo108204.2;Parent=Physo108204;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 1281937 1282618 . + 0 ID=Physo108204;Parent=Physo108204;rank=3 scaffold_2 . exon 1281937 1282688 . + . ID=Physo108204.3;Parent=Physo108204;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 1276028 1278580 . + . ID=Physo127729;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20305;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1276028 1278580 . + . ID=Physo127729;Parent=Physo127729;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1276028 1278580 . + 0 ID=Physo127729;Parent=Physo127729;rank=1 scaffold_2 . exon 1276028 1278580 . + . ID=Physo127729.1;Parent=Physo127729;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1278708 1281320 . + . ID=Physo127730;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20306;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1278708 1281320 . + . ID=Physo127730;Parent=Physo127730;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1278708 1281320 . + 0 ID=Physo127730;Parent=Physo127730;rank=1 scaffold_2 . exon 1278708 1281320 . + . ID=Physo127730.1;Parent=Physo127730;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1283581 1284927 . - . ID=Physo127732;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20308;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1283581 1284927 . - . ID=Physo127732;Parent=Physo127732;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1283581 1284399 . - 0 ID=Physo127732;Parent=Physo127732;rank=2 scaffold_2 . exon 1283581 1284399 . - . ID=Physo127732.2;Parent=Physo127732;constitutive=1;rank=2 scaffold_2 . CDS 1284475 1284927 . - 0 ID=Physo127732;Parent=Physo127732;rank=1 scaffold_2 . exon 1284475 1284927 . - . ID=Physo127732.1;Parent=Physo127732;constitutive=1;rank=1 scaffold_2 . biological_region 1284713 1284717 0.999 - . logic_name=eponine scaffold_2 . biological_region 1284751 1284757 0.999 + . logic_name=eponine scaffold_2 . biological_region 1284768 1284770 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1285764 1285823 . ? . description=dust scaffold_2 . repeat_region 1287102 1287109 . ? . description=dust scaffold_2 . repeat_region 1288559 1306096 . ? . description=dust scaffold_2 . repeat_region 1288559 1306096 . ? . description=dust scaffold_2 . repeat_region 1306097 1306311 . ? . description=dust scaffold_2 . biological_region 1306969 1306969 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1307464 1307512 . ? . description=dust scaffold_2 . repeat_region 1307464 1307512 . ? . description=trf scaffold_2 . biological_region 1309815 1309816 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1310450 1310481 . ? . description=dust scaffold_2 . repeat_region 1310527 1310549 . ? . description=trf scaffold_2 . biological_region 1311081 1311083 0.999 + . logic_name=eponine scaffold_2 . biological_region 1311715 1311716 0.999 + . logic_name=eponine scaffold_2 . biological_region 1314456 1314457 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1309714 1310006 . - . ID=Physo110348;biotype=protein_coding;external_name=estExt_Genewise1.C_20194;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1309714 1310006 . - . ID=Physo110348;Parent=Physo110348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1309714 1309830 . - 0 ID=Physo110348;Parent=Physo110348;rank=1 scaffold_2 . exon 1309714 1309883 . - . ID=Physo110348.2;Parent=Physo110348;constitutive=1;ensembl_phase=-1;rank=2 scaffold_2 . exon 1309967 1310006 . - . ID=Physo110348.1;Parent=Physo110348;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 1311532 1313471 . + . ID=Physo110356;biotype=protein_coding;external_name=estExt_Genewise1.C_20202;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1311532 1313471 . + . ID=Physo110356;Parent=Physo110356;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1311532 1311877 . + . ID=Physo110356.1;Parent=Physo110356;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1311566 1311877 . + 0 ID=Physo110356;Parent=Physo110356;rank=1 scaffold_2 . CDS 1311944 1312239 . + 0 ID=Physo110356;Parent=Physo110356;rank=2 scaffold_2 . exon 1311944 1312239 . + . ID=Physo110356.2;Parent=Physo110356;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 1312308 1312832 . + 0 ID=Physo110356;Parent=Physo110356;rank=3 scaffold_2 . exon 1312308 1312832 . + . ID=Physo110356.3;Parent=Physo110356;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2 . CDS 1312901 1313450 . + 0 ID=Physo110356;Parent=Physo110356;rank=4 scaffold_2 . exon 1312901 1313471 . + . ID=Physo110356.4;Parent=Physo110356;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_2 ensembl protein_coding_gene 1306507 1307175 . - . ID=Physo127733;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20309;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1306507 1307175 . - . ID=Physo127733;Parent=Physo127733;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1306507 1306605 . - 0 ID=Physo127733;Parent=Physo127733;rank=2 scaffold_2 . exon 1306507 1306605 . - . ID=Physo127733.2;Parent=Physo127733;constitutive=1;rank=2 scaffold_2 . CDS 1306681 1307175 . - 0 ID=Physo127733;Parent=Physo127733;rank=1 scaffold_2 . exon 1306681 1307175 . - . ID=Physo127733.1;Parent=Physo127733;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1307792 1309368 . - . ID=Physo127734;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20310;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1307792 1309368 . - . ID=Physo127734;Parent=Physo127734;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1307792 1309368 . - . ID=Physo127734.1;Parent=Physo127734;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_2 . CDS 1307872 1309368 . - 0 ID=Physo127734;Parent=Physo127734;rank=1 scaffold_2 . repeat_region 1315947 1316047 . + . description=(CAG)n scaffold_2 ensembl protein_coding_gene 1315030 1316900 . + . ID=Physo127736;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20312;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1315030 1316900 . + . ID=Physo127736;Parent=Physo127736;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1315030 1316667 . + 0 ID=Physo127736;Parent=Physo127736;rank=1 scaffold_2 . exon 1315030 1316667 . + . ID=Physo127736.1;Parent=Physo127736;constitutive=1;rank=1 scaffold_2 . CDS 1316745 1316900 . + 0 ID=Physo127736;Parent=Physo127736;rank=2 scaffold_2 . exon 1316745 1316900 . + . ID=Physo127736.2;Parent=Physo127736;constitutive=1;rank=2 scaffold_2 ensembl protein_coding_gene 1316995 1319397 . - . ID=Physo127737;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20313;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1316995 1319397 . - . ID=Physo127737;Parent=Physo127737;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1316995 1317012 . - 0 ID=Physo127737;Parent=Physo127737;rank=3 scaffold_2 . exon 1316995 1317012 . - . ID=Physo127737.3;Parent=Physo127737;constitutive=1;rank=3 scaffold_2 . CDS 1317175 1317398 . - 0 ID=Physo127737;Parent=Physo127737;rank=2 scaffold_2 . exon 1317175 1317398 . - . ID=Physo127737.2;Parent=Physo127737;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1317432 1319397 . - 0 ID=Physo127737;Parent=Physo127737;rank=1 scaffold_2 . exon 1317432 1319397 . - . ID=Physo127737.1;Parent=Physo127737;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1319553 1323904 . - . ID=Physo127738;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20314;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1319553 1323904 . - . ID=Physo127738;Parent=Physo127738;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1319553 1320205 . - 0 ID=Physo127738;Parent=Physo127738;rank=5 scaffold_2 . exon 1319553 1320205 . - . ID=Physo127738.5;Parent=Physo127738;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 1320226 1320443 . - 0 ID=Physo127738;Parent=Physo127738;rank=4 scaffold_2 . exon 1320226 1320443 . - . ID=Physo127738.4;Parent=Physo127738;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 1320510 1320982 . - 0 ID=Physo127738;Parent=Physo127738;rank=3 scaffold_2 . exon 1320510 1320982 . - . ID=Physo127738.3;Parent=Physo127738;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 1321062 1321165 . - 0 ID=Physo127738;Parent=Physo127738;rank=2 scaffold_2 . exon 1321062 1321165 . - . ID=Physo127738.2;Parent=Physo127738;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1321354 1323904 . - 0 ID=Physo127738;Parent=Physo127738;rank=1 scaffold_2 . exon 1321354 1323904 . - . ID=Physo127738.1;Parent=Physo127738;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1324061 1326019 . + . ID=Physo127739;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20315;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1324061 1326019 . + . ID=Physo127739;Parent=Physo127739;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1324061 1326019 . + 0 ID=Physo127739;Parent=Physo127739;rank=1 scaffold_2 . exon 1324061 1326019 . + . ID=Physo127739.1;Parent=Physo127739;constitutive=1;rank=1 scaffold_2 . biological_region 1324552 1324557 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1325265 1325296 . ? . description=trf scaffold_2 . repeat_region 1325442 1325532 . ? . description=trf scaffold_2 . biological_region 1327889 1327889 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1331669 1331716 . ? . description=trf scaffold_2 . biological_region 1332194 1332198 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1332228 1332277 . ? . description=dust scaffold_2 . biological_region 1332274 1332277 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1332462 1332469 . ? . description=dust scaffold_2 . biological_region 1333835 1333838 0.999 + . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1331023 1332180 . - . ID=Physo108205;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20037;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1331023 1332180 . - . ID=Physo108205;Parent=Physo108205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1331023 1331864 . - 0 ID=Physo108205;Parent=Physo108205;rank=2 scaffold_2 . exon 1331023 1331864 . - . ID=Physo108205.2;Parent=Physo108205;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1331940 1332180 . - 0 ID=Physo108205;Parent=Physo108205;rank=1 scaffold_2 . exon 1331940 1332180 . - . ID=Physo108205.1;Parent=Physo108205;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1326751 1327808 . + . ID=Physo127740;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20316;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1326751 1327808 . + . ID=Physo127740;Parent=Physo127740;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1326751 1327595 . + 0 ID=Physo127740;Parent=Physo127740;rank=1 scaffold_2 . exon 1326751 1327595 . + . ID=Physo127740.1;Parent=Physo127740;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1327736 1327808 . + 0 ID=Physo127740;Parent=Physo127740;rank=2 scaffold_2 . exon 1327736 1327808 . + . ID=Physo127740.2;Parent=Physo127740;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 ensembl protein_coding_gene 1329693 1330881 . + . ID=Physo127741;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20317;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1329693 1330881 . + . ID=Physo127741;Parent=Physo127741;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1329693 1329718 . + 0 ID=Physo127741;Parent=Physo127741;rank=1 scaffold_2 . exon 1329693 1329718 . + . ID=Physo127741.1;Parent=Physo127741;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1329781 1329826 . + 0 ID=Physo127741;Parent=Physo127741;rank=2 scaffold_2 . exon 1329781 1329826 . + . ID=Physo127741.2;Parent=Physo127741;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1329898 1330362 . + 0 ID=Physo127741;Parent=Physo127741;rank=3 scaffold_2 . exon 1329898 1330362 . + . ID=Physo127741.3;Parent=Physo127741;constitutive=1;rank=3 scaffold_2 . CDS 1330435 1330881 . + 0 ID=Physo127741;Parent=Physo127741;rank=4 scaffold_2 . exon 1330435 1330881 . + . ID=Physo127741.4;Parent=Physo127741;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 1332858 1334962 . + . ID=Physo127743;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20319;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1332858 1334962 . + . ID=Physo127743;Parent=Physo127743;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1332858 1333059 . + 0 ID=Physo127743;Parent=Physo127743;rank=1 scaffold_2 . exon 1332858 1333059 . + . ID=Physo127743.1;Parent=Physo127743;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 1333500 1333633 . + 0 ID=Physo127743;Parent=Physo127743;rank=2 scaffold_2 . exon 1333500 1333633 . + . ID=Physo127743.2;Parent=Physo127743;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1333655 1334027 . + 0 ID=Physo127743;Parent=Physo127743;rank=3 scaffold_2 . exon 1333655 1334027 . + . ID=Physo127743.3;Parent=Physo127743;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 1334139 1334962 . + 0 ID=Physo127743;Parent=Physo127743;rank=4 scaffold_2 . exon 1334139 1334962 . + . ID=Physo127743.4;Parent=Physo127743;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl tRNA_gene 1337048 1337117 . - . ID=EPrPSOG00000000144;biotype=tRNA;description=tRNA-Undet for anticodon ??? [Source:TRNASCAN_SE%3BAcc:tRNA-Undet];external_name=tRNA-Undet;logic_name=ncrna_eg scaffold_2 ensembl transcript 1337048 1337117 . - . ID=EPrPSOT00000000144;Parent=EPrPSOG00000000144;biotype=tRNA;logic_name=ncrna_eg scaffold_2 . exon 1337048 1337117 . - . ID=EPrPSOE00000000144;Parent=EPrPSOT00000000144;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . repeat_region 1344190 1345585 . ? . description=dust scaffold_2 . repeat_region 1346718 1346797 . ? . description=trf scaffold_2 . repeat_region 1348182 1348286 . ? . description=trf scaffold_2 . repeat_region 1349517 1349596 . ? . description=trf scaffold_2 . repeat_region 1350495 1352832 . ? . description=dust scaffold_2 . repeat_region 1353787 1353869 . ? . description=trf scaffold_2 ensembl protein_coding_gene 1355694 1356312 . + . ID=Physo127744;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20320;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1355694 1356312 . + . ID=Physo127744;Parent=Physo127744;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1355694 1355845 . + 0 ID=Physo127744;Parent=Physo127744;rank=1 scaffold_2 . exon 1355694 1355845 . + . ID=Physo127744.1;Parent=Physo127744;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1355988 1356312 . + 0 ID=Physo127744;Parent=Physo127744;rank=2 scaffold_2 . exon 1355988 1356312 . + . ID=Physo127744.2;Parent=Physo127744;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . repeat_region 1364682 1364786 . ? . description=trf scaffold_2 . repeat_region 1366198 1366210 . ? . description=dust scaffold_2 . repeat_region 1366512 1366543 . ? . description=trf scaffold_2 . repeat_region 1366512 1366543 . ? . description=trf scaffold_2 . repeat_region 1368267 1368371 . ? . description=trf scaffold_2 . repeat_region 1368271 1368371 . ? . description=trf scaffold_2 . biological_region 1369494 1369501 0.999 - . logic_name=eponine scaffold_2 . biological_region 1370718 1370718 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1370839 1370870 . ? . description=trf scaffold_2 . repeat_region 1370968 1370982 . ? . description=dust scaffold_2 . repeat_region 1377124 1378294 . + . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 1378621 1378898 . + . description=GypsyPi-1c_I-int scaffold_2 ensembl protein_coding_gene 1377285 1378663 . + . ID=Physo127745;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20321;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1377285 1378663 . + . ID=Physo127745;Parent=Physo127745;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1377285 1377749 . + 0 ID=Physo127745;Parent=Physo127745;rank=1 scaffold_2 . exon 1377285 1377749 . + . ID=Physo127745.1;Parent=Physo127745;constitutive=1;rank=1 scaffold_2 . CDS 1377847 1378616 . + 0 ID=Physo127745;Parent=Physo127745;rank=2 scaffold_2 . exon 1377847 1378616 . + . ID=Physo127745.2;Parent=Physo127745;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 1378657 1378663 . + 0 ID=Physo127745;Parent=Physo127745;rank=3 scaffold_2 . exon 1378657 1378663 . + . ID=Physo127745.3;Parent=Physo127745;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 ensembl protein_coding_gene 1381874 1383198 . - . ID=Physo127746;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20322;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1381874 1383198 . - . ID=Physo127746;Parent=Physo127746;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1381874 1382789 . - 0 ID=Physo127746;Parent=Physo127746;rank=2 scaffold_2 . exon 1381874 1382789 . - . ID=Physo127746.2;Parent=Physo127746;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1382840 1383198 . - 0 ID=Physo127746;Parent=Physo127746;rank=1 scaffold_2 . exon 1382840 1383198 . - . ID=Physo127746.1;Parent=Physo127746;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 1383625 1385796 . + . ID=Physo127747;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20323;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1383625 1385796 . + . ID=Physo127747;Parent=Physo127747;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1383625 1384165 . + 0 ID=Physo127747;Parent=Physo127747;rank=1 scaffold_2 . exon 1383625 1384165 . + . ID=Physo127747.1;Parent=Physo127747;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 1384495 1384764 . + 0 ID=Physo127747;Parent=Physo127747;rank=2 scaffold_2 . CDS 1385158 1385292 . + 0 ID=Physo127747;Parent=Physo127747;rank=3 scaffold_2 . CDS 1385372 1385775 . + 0 ID=Physo127747;Parent=Physo127747;rank=4 scaffold_2 . repeat_region 1384857 1384880 . ? . description=dust scaffold_2 . biological_region 1385313 1385315 0.999 + . logic_name=eponine scaffold_2 . biological_region 1385371 1385376 0.999 - . logic_name=eponine scaffold_2 . biological_region 1385478 1385481 0.999 - . logic_name=eponine scaffold_2 . biological_region 1387633 1387636 0.999 - . logic_name=eponine scaffold_2 . biological_region 1387666 1387669 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1388761 1388791 . ? . description=dust scaffold_2 . repeat_region 1388761 1388791 . ? . description=trf scaffold_2 . repeat_region 1389496 1389523 . ? . description=trf scaffold_2 . biological_region 1389882 1389883 0.999 + . logic_name=eponine scaffold_2 . biological_region 1389924 1389928 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1390619 1390626 . ? . description=dust scaffold_2 . biological_region 1390649 1390649 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1391994 1392033 . ? . description=trf scaffold_2 . repeat_region 1393347 1393355 . ? . description=dust scaffold_2 . repeat_region 1393698 1393759 . ? . description=trf scaffold_2 ensembl protein_coding_gene 1389338 1390106 . - . ID=Physo108206;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20038;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1389338 1390106 . - . ID=Physo108206;Parent=Physo108206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1389338 1390106 . - . ID=Physo108206.1;Parent=Physo108206;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1389436 1390059 . - 0 ID=Physo108206;Parent=Physo108206;rank=1 scaffold_2 . exon 1384495 1384764 . + . ID=Physo127747.2;Parent=Physo127747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . exon 1385158 1385292 . + . ID=Physo127747.3;Parent=Physo127747;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . exon 1385372 1385796 . + . ID=Physo127747.4;Parent=Physo127747;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 1386521 1389206 . + . ID=Physo127748;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20324;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1386521 1389206 . + . ID=Physo127748;Parent=Physo127748;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1386521 1387392 . + 0 ID=Physo127748;Parent=Physo127748;rank=1 scaffold_2 . exon 1386521 1387392 . + . ID=Physo127748.1;Parent=Physo127748;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1387509 1387869 . + 0 ID=Physo127748;Parent=Physo127748;rank=2 scaffold_2 . exon 1387509 1387869 . + . ID=Physo127748.2;Parent=Physo127748;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1387952 1388185 . + 0 ID=Physo127748;Parent=Physo127748;rank=3 scaffold_2 . exon 1387952 1388185 . + . ID=Physo127748.3;Parent=Physo127748;constitutive=1;rank=3 scaffold_2 . CDS 1388262 1389206 . + 0 ID=Physo127748;Parent=Physo127748;rank=4 scaffold_2 . exon 1388262 1389206 . + . ID=Physo127748.4;Parent=Physo127748;constitutive=1;rank=4 scaffold_2 . repeat_region 1396959 1397097 . - . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 1397584 1400506 . - . description=GypsyPi-1c_I-int scaffold_2 . repeat_region 1401084 1401632 . - . description=GypsyPi-1c_I-int scaffold_2 ensembl protein_coding_gene 1394883 1397603 . + . ID=Physo127750;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20326;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1394883 1397603 . + . ID=Physo127750;Parent=Physo127750;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1394883 1395159 . + . ID=Physo127750.1;Parent=Physo127750;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1394948 1395159 . + 0 ID=Physo127750;Parent=Physo127750;rank=1 scaffold_2 . CDS 1395652 1396491 . + 0 ID=Physo127750;Parent=Physo127750;rank=2 scaffold_2 . exon 1395652 1396491 . + . ID=Physo127750.2;Parent=Physo127750;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 1396530 1396801 . + 0 ID=Physo127750;Parent=Physo127750;rank=3 scaffold_2 . exon 1396530 1396801 . + . ID=Physo127750.3;Parent=Physo127750;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 1397068 1397603 . + 0 ID=Physo127750;Parent=Physo127750;rank=4 scaffold_2 . exon 1397068 1397603 . + . ID=Physo127750.4;Parent=Physo127750;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 1397909 1402562 . - . ID=Physo127751;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20327;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1397909 1402562 . - . ID=Physo127751;Parent=Physo127751;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1397909 1397913 . - 0 ID=Physo127751;Parent=Physo127751;rank=12 scaffold_2 . exon 1397909 1397913 . - . ID=Physo127751.12;Parent=Physo127751;constitutive=1;ensembl_phase=1;rank=12 scaffold_2 . CDS 1397982 1398478 . - 0 ID=Physo127751;Parent=Physo127751;rank=11 scaffold_2 . exon 1397982 1398478 . - . ID=Physo127751.11;Parent=Physo127751;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=11 scaffold_2 . CDS 1398557 1398603 . - 0 ID=Physo127751;Parent=Physo127751;rank=10 scaffold_2 . exon 1398557 1398603 . - . ID=Physo127751.10;Parent=Physo127751;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_2 . CDS 1398651 1398887 . - 0 ID=Physo127751;Parent=Physo127751;rank=9 scaffold_2 . exon 1398651 1398887 . - . ID=Physo127751.9;Parent=Physo127751;constitutive=1;rank=9 scaffold_2 . CDS 1398941 1399710 . - 0 ID=Physo127751;Parent=Physo127751;rank=8 scaffold_2 . exon 1398941 1399710 . - . ID=Physo127751.8;Parent=Physo127751;constitutive=1;ensembl_phase=1;rank=8 scaffold_2 . CDS 1399731 1400139 . - 0 ID=Physo127751;Parent=Physo127751;rank=7 scaffold_2 . exon 1399731 1400139 . - . ID=Physo127751.7;Parent=Physo127751;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_2 . CDS 1400174 1401085 . - 0 ID=Physo127751;Parent=Physo127751;rank=6 scaffold_2 . exon 1400174 1401085 . - . ID=Physo127751.6;Parent=Physo127751;constitutive=1;rank=6 scaffold_2 . CDS 1401238 1401378 . - 0 ID=Physo127751;Parent=Physo127751;rank=5 scaffold_2 . exon 1401238 1401378 . - . ID=Physo127751.5;Parent=Physo127751;constitutive=1;rank=5 scaffold_2 . CDS 1401689 1401787 . - 0 ID=Physo127751;Parent=Physo127751;rank=4 scaffold_2 . exon 1401689 1401787 . - . ID=Physo127751.4;Parent=Physo127751;constitutive=1;rank=4 scaffold_2 . CDS 1401912 1402091 . - 0 ID=Physo127751;Parent=Physo127751;rank=3 scaffold_2 . exon 1401912 1402091 . - . ID=Physo127751.3;Parent=Physo127751;constitutive=1;rank=3 scaffold_2 . CDS 1402118 1402290 . - 0 ID=Physo127751;Parent=Physo127751;rank=2 scaffold_2 . exon 1402118 1402290 . - . ID=Physo127751.2;Parent=Physo127751;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1402334 1402562 . - 0 ID=Physo127751;Parent=Physo127751;rank=1 scaffold_2 . exon 1402334 1402562 . - . ID=Physo127751.1;Parent=Physo127751;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1403568 1404480 . + . ID=Physo127752;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20328;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1403568 1404480 . + . ID=Physo127752;Parent=Physo127752;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1403568 1404047 . + 0 ID=Physo127752;Parent=Physo127752;rank=1 scaffold_2 . exon 1403568 1404047 . + . ID=Physo127752.1;Parent=Physo127752;constitutive=1;rank=1 scaffold_2 . CDS 1404102 1404112 . + 0 ID=Physo127752;Parent=Physo127752;rank=2 scaffold_2 . exon 1404102 1404112 . + . ID=Physo127752.2;Parent=Physo127752;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 1404266 1404418 . + 0 ID=Physo127752;Parent=Physo127752;rank=3 scaffold_2 . CDS 1404438 1404480 . + 0 ID=Physo127752;Parent=Physo127752;rank=4 scaffold_2 . biological_region 1406161 1406167 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1406474 1406650 . ? . description=trf scaffold_2 . repeat_region 1406649 1406690 . ? . description=trf scaffold_2 . biological_region 1407137 1407141 0.999 - . logic_name=eponine scaffold_2 . biological_region 1409186 1409190 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1410522 1410536 . ? . description=dust scaffold_2 . repeat_region 1410810 1410818 . ? . description=dust scaffold_2 . biological_region 1411264 1411266 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1412816 1412969 . ? . description=trf scaffold_2 . repeat_region 1412816 1412969 . ? . description=trf scaffold_2 . repeat_region 1412839 1412969 . ? . description=trf scaffold_2 . repeat_region 1412858 1412969 . ? . description=trf scaffold_2 . exon 1404266 1404418 . + . ID=Physo127752.3;Parent=Physo127752;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2 . exon 1404438 1404480 . + . ID=Physo127752.4;Parent=Physo127752;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 ensembl protein_coding_gene 1411445 1412827 . + . ID=Physo127753;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20329;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1411445 1412827 . + . ID=Physo127753;Parent=Physo127753;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1411445 1412827 . + 0 ID=Physo127753;Parent=Physo127753;rank=1 scaffold_2 . exon 1411445 1412827 . + . ID=Physo127753.1;Parent=Physo127753;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1413059 1413409 . - . ID=Physo127754;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20330;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1413059 1413409 . - . ID=Physo127754;Parent=Physo127754;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1413059 1413409 . - 0 ID=Physo127754;Parent=Physo127754;rank=1 scaffold_2 . exon 1413059 1413409 . - . ID=Physo127754.1;Parent=Physo127754;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1424020 1425638 . - . ID=Physo108207;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20039;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1424020 1425638 . - . ID=Physo108207;Parent=Physo108207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1424020 1424145 . - 0 ID=Physo108207;Parent=Physo108207;rank=5 scaffold_2 . exon 1424020 1424145 . - . ID=Physo108207.5;Parent=Physo108207;constitutive=1;rank=5 scaffold_2 . CDS 1424214 1424275 . - 0 ID=Physo108207;Parent=Physo108207;rank=4 scaffold_2 . CDS 1424357 1424438 . - 0 ID=Physo108207;Parent=Physo108207;rank=3 scaffold_2 . CDS 1424523 1424714 . - 0 ID=Physo108207;Parent=Physo108207;rank=2 scaffold_2 . CDS 1424797 1425636 . - 0 ID=Physo108207;Parent=Physo108207;rank=1 scaffold_2 ensembl protein_coding_gene 1418447 1419266 . - . ID=Physo127755;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20331;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1418447 1419266 . - . ID=Physo127755;Parent=Physo127755;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1418447 1418972 . - 0 ID=Physo127755;Parent=Physo127755;rank=2 scaffold_2 . exon 1418447 1418972 . - . ID=Physo127755.2;Parent=Physo127755;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1418992 1419266 . - 0 ID=Physo127755;Parent=Physo127755;rank=1 scaffold_2 . exon 1418992 1419266 . - . ID=Physo127755.1;Parent=Physo127755;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 ensembl protein_coding_gene 1419616 1420633 . + . ID=Physo127756;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20332;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1419616 1420633 . + . ID=Physo127756;Parent=Physo127756;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1419616 1419935 . + 0 ID=Physo127756;Parent=Physo127756;rank=1 scaffold_2 . exon 1419616 1419935 . + . ID=Physo127756.1;Parent=Physo127756;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1420032 1420263 . + 0 ID=Physo127756;Parent=Physo127756;rank=2 scaffold_2 . exon 1420032 1420263 . + . ID=Physo127756.2;Parent=Physo127756;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1420345 1420441 . + 0 ID=Physo127756;Parent=Physo127756;rank=3 scaffold_2 . exon 1420345 1420441 . + . ID=Physo127756.3;Parent=Physo127756;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . CDS 1420611 1420633 . + 0 ID=Physo127756;Parent=Physo127756;rank=4 scaffold_2 . exon 1420611 1420633 . + . ID=Physo127756.4;Parent=Physo127756;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 1421203 1423704 . - . ID=Physo127757;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20333;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1421203 1423704 . - . ID=Physo127757;Parent=Physo127757;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1421203 1421216 . - 0 ID=Physo127757;Parent=Physo127757;rank=6 scaffold_2 . exon 1421203 1421216 . - . ID=Physo127757.6;Parent=Physo127757;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 1421393 1421840 . - 0 ID=Physo127757;Parent=Physo127757;rank=5 scaffold_2 . exon 1421393 1421840 . - . ID=Physo127757.5;Parent=Physo127757;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_2 . CDS 1421908 1422016 . - 0 ID=Physo127757;Parent=Physo127757;rank=4 scaffold_2 . exon 1421908 1422016 . - . ID=Physo127757.4;Parent=Physo127757;constitutive=1;ensembl_phase=2;rank=4 scaffold_2 . CDS 1422085 1422533 . - 0 ID=Physo127757;Parent=Physo127757;rank=3 scaffold_2 . exon 1422085 1422533 . - . ID=Physo127757.3;Parent=Physo127757;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . CDS 1422773 1423360 . - 0 ID=Physo127757;Parent=Physo127757;rank=2 scaffold_2 . exon 1422773 1423360 . - . ID=Physo127757.2;Parent=Physo127757;constitutive=1;rank=2 scaffold_2 . CDS 1423585 1423704 . - 0 ID=Physo127757;Parent=Physo127757;rank=1 scaffold_2 . exon 1423585 1423704 . - . ID=Physo127757.1;Parent=Physo127757;constitutive=1;rank=1 scaffold_2 . biological_region 1425305 1425309 0.999 + . logic_name=eponine scaffold_2 . biological_region 1425329 1425334 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1427045 1427052 . ? . description=dust scaffold_2 . repeat_region 1427734 1427796 . ? . description=dust scaffold_2 . biological_region 1428428 1428433 0.999 + . logic_name=eponine scaffold_2 . biological_region 1428544 1428547 0.999 - . logic_name=eponine scaffold_2 . biological_region 1429032 1429038 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1429912 1429931 . ? . description=trf scaffold_2 . biological_region 1430007 1430010 0.999 - . logic_name=eponine scaffold_2 . biological_region 1430017 1430023 0.999 - . logic_name=eponine scaffold_2 . biological_region 1430018 1430022 0.999 + . logic_name=eponine scaffold_2 . biological_region 1430862 1430866 0.999 + . logic_name=eponine scaffold_2 . exon 1424214 1424275 . - . ID=Physo108207.4;Parent=Physo108207;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 . exon 1424357 1424438 . - . ID=Physo108207.3;Parent=Physo108207;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_2 . exon 1424523 1424714 . - . ID=Physo108207.2;Parent=Physo108207;constitutive=1;rank=2 scaffold_2 . exon 1424797 1425638 . - . ID=Physo108207.1;Parent=Physo108207;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 1425813 1427822 . - . ID=Physo127759;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20335;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1425813 1427822 . - . ID=Physo127759;Parent=Physo127759;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1425813 1426268 . - . ID=Physo127759.9;Parent=Physo127759;constitutive=1;ensembl_end_phase=-1;rank=9 scaffold_2 . CDS 1425876 1426268 . - 0 ID=Physo127759;Parent=Physo127759;rank=9 scaffold_2 . CDS 1426341 1426454 . - 0 ID=Physo127759;Parent=Physo127759;rank=8 scaffold_2 . exon 1426341 1426454 . - . ID=Physo127759.8;Parent=Physo127759;constitutive=1;rank=8 scaffold_2 . CDS 1426538 1426702 . - 0 ID=Physo127759;Parent=Physo127759;rank=7 scaffold_2 . exon 1426538 1426702 . - . ID=Physo127759.7;Parent=Physo127759;constitutive=1;rank=7 scaffold_2 . CDS 1426774 1426853 . - 0 ID=Physo127759;Parent=Physo127759;rank=6 scaffold_2 . exon 1426774 1426853 . - . ID=Physo127759.6;Parent=Physo127759;constitutive=1;ensembl_phase=1;rank=6 scaffold_2 . CDS 1426925 1427010 . - 0 ID=Physo127759;Parent=Physo127759;rank=5 scaffold_2 . exon 1426925 1427010 . - . ID=Physo127759.5;Parent=Physo127759;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 1427076 1427141 . - 0 ID=Physo127759;Parent=Physo127759;rank=4 scaffold_2 . exon 1427076 1427141 . - . ID=Physo127759.4;Parent=Physo127759;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_2 . CDS 1427234 1427398 . - 0 ID=Physo127759;Parent=Physo127759;rank=3 scaffold_2 . exon 1427234 1427398 . - . ID=Physo127759.3;Parent=Physo127759;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_2 . CDS 1427471 1427591 . - 0 ID=Physo127759;Parent=Physo127759;rank=2 scaffold_2 . exon 1427471 1427591 . - . ID=Physo127759.2;Parent=Physo127759;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_2 . CDS 1427672 1427822 . - 0 ID=Physo127759;Parent=Physo127759;rank=1 scaffold_2 . exon 1427672 1427822 . - . ID=Physo127759.1;Parent=Physo127759;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1428014 1428730 . + . ID=Physo127760;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20336;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1428014 1428730 . + . ID=Physo127760;Parent=Physo127760;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1428014 1428219 . + 0 ID=Physo127760;Parent=Physo127760;rank=1 scaffold_2 . exon 1428014 1428219 . + . ID=Physo127760.1;Parent=Physo127760;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1428295 1428356 . + 0 ID=Physo127760;Parent=Physo127760;rank=2 scaffold_2 . exon 1428295 1428356 . + . ID=Physo127760.2;Parent=Physo127760;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1428437 1428523 . + 0 ID=Physo127760;Parent=Physo127760;rank=3 scaffold_2 . exon 1428437 1428523 . + . ID=Physo127760.3;Parent=Physo127760;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 1428591 1428730 . + 0 ID=Physo127760;Parent=Physo127760;rank=4 scaffold_2 . exon 1428591 1428730 . + . ID=Physo127760.4;Parent=Physo127760;constitutive=1;ensembl_phase=1;rank=4 scaffold_2 ensembl protein_coding_gene 1428899 1430269 . - . ID=Physo127761;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20337;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1428899 1430269 . - . ID=Physo127761;Parent=Physo127761;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1428899 1430269 . - 0 ID=Physo127761;Parent=Physo127761;rank=1 scaffold_2 . exon 1428899 1430269 . - . ID=Physo127761.1;Parent=Physo127761;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1430692 1433328 . - . ID=Physo127762;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20338;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1430692 1433328 . - . ID=Physo127762;Parent=Physo127762;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1430692 1433328 . - 0 ID=Physo127762;Parent=Physo127762;rank=1 scaffold_2 . exon 1430692 1433328 . - . ID=Physo127762.1;Parent=Physo127762;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1433813 1436626 . - . ID=Physo127763;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20339;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1433813 1436626 . - . ID=Physo127763;Parent=Physo127763;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1433813 1436626 . - 0 ID=Physo127763;Parent=Physo127763;rank=1 scaffold_2 . exon 1433813 1436626 . - . ID=Physo127763.1;Parent=Physo127763;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1439303 1440730 . - . ID=Physo127764;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20340;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1439303 1440730 . - . ID=Physo127764;Parent=Physo127764;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1439303 1439654 . - 0 ID=Physo127764;Parent=Physo127764;rank=2 scaffold_2 . exon 1439303 1439654 . - . ID=Physo127764.2;Parent=Physo127764;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1439997 1440730 . - 0 ID=Physo127764;Parent=Physo127764;rank=1 scaffold_2 . exon 1439997 1440730 . - . ID=Physo127764.1;Parent=Physo127764;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . repeat_region 1446082 1446117 . ? . description=trf scaffold_2 . repeat_region 1446195 1446238 . ? . description=trf scaffold_2 . repeat_region 1446789 1446838 . ? . description=dust scaffold_2 . biological_region 1449940 1449944 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1447193 1449799 . - . ID=Physo127765;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20341;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1447193 1449799 . - . ID=Physo127765;Parent=Physo127765;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1447193 1449799 . - 0 ID=Physo127765;Parent=Physo127765;rank=1 scaffold_2 . exon 1447193 1449799 . - . ID=Physo127765.1;Parent=Physo127765;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1450467 1453235 . - . ID=Physo127766;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20342;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1450467 1453235 . - . ID=Physo127766;Parent=Physo127766;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1450467 1453235 . - 0 ID=Physo127766;Parent=Physo127766;rank=1 scaffold_2 . exon 1450467 1453235 . - . ID=Physo127766.1;Parent=Physo127766;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1453753 1456840 . - . ID=Physo127767;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20343;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1453753 1456840 . - . ID=Physo127767;Parent=Physo127767;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1453753 1456614 . - 0 ID=Physo127767;Parent=Physo127767;rank=2 scaffold_2 . exon 1453753 1456614 . - . ID=Physo127767.2;Parent=Physo127767;constitutive=1;rank=2 scaffold_2 . CDS 1456682 1456840 . - 0 ID=Physo127767;Parent=Physo127767;rank=1 scaffold_2 ensembl protein_coding_gene 1458430 1462667 . + . ID=Physo108208;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20040;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1458430 1462667 . + . ID=Physo108208;Parent=Physo108208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1458430 1462667 . + . ID=Physo108208.1;Parent=Physo108208;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1458478 1462338 . + 0 ID=Physo108208;Parent=Physo108208;rank=1 scaffold_2 ensembl protein_coding_gene 1463037 1465315 . + . ID=Physo108209;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20041;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1463037 1465315 . + . ID=Physo108209;Parent=Physo108209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1463037 1464899 . + 0 ID=Physo108209;Parent=Physo108209;rank=1 scaffold_2 . exon 1463037 1464899 . + . ID=Physo108209.1;Parent=Physo108209;constitutive=1;rank=1 scaffold_2 . CDS 1464973 1465272 . + 0 ID=Physo108209;Parent=Physo108209;rank=2 scaffold_2 . exon 1456682 1456840 . - . ID=Physo127767.1;Parent=Physo127767;constitutive=1;rank=1 scaffold_2 . repeat_region 1465558 1465568 . ? . description=dust scaffold_2 . repeat_region 1467565 1467613 . ? . description=trf scaffold_2 . repeat_region 1467642 1467729 . ? . description=trf scaffold_2 . repeat_region 1467920 1468156 . + . description=Polinton-1_PI scaffold_2 . biological_region 1471769 1471770 0.999 - . logic_name=eponine scaffold_2 . biological_region 1471826 1471826 0.999 + . logic_name=eponine scaffold_2 . biological_region 1471840 1471842 0.999 + . logic_name=eponine scaffold_2 . biological_region 1472421 1472423 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1472475 1472495 . ? . description=trf scaffold_2 . biological_region 1472803 1472807 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1472805 1472836 . ? . description=trf scaffold_2 . biological_region 1473197 1473200 0.999 + . logic_name=eponine scaffold_2 . biological_region 1473281 1473285 0.999 - . logic_name=eponine scaffold_2 . biological_region 1473306 1473309 0.999 - . logic_name=eponine scaffold_2 . biological_region 1473326 1473329 0.999 - . logic_name=eponine scaffold_2 . exon 1464973 1465315 . + . ID=Physo108209.2;Parent=Physo108209;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_2 ensembl protein_coding_gene 1467089 1468802 . + . ID=Physo127770;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20346;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1467089 1468802 . + . ID=Physo127770;Parent=Physo127770;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1467089 1467158 . + 0 ID=Physo127770;Parent=Physo127770;rank=1 scaffold_2 . exon 1467089 1467158 . + . ID=Physo127770.1;Parent=Physo127770;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 1467256 1467341 . + 0 ID=Physo127770;Parent=Physo127770;rank=2 scaffold_2 . exon 1467256 1467341 . + . ID=Physo127770.2;Parent=Physo127770;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1467464 1467577 . + 0 ID=Physo127770;Parent=Physo127770;rank=3 scaffold_2 . exon 1467464 1467577 . + . ID=Physo127770.3;Parent=Physo127770;constitutive=1;rank=3 scaffold_2 . CDS 1467659 1467790 . + 0 ID=Physo127770;Parent=Physo127770;rank=4 scaffold_2 . exon 1467659 1467790 . + . ID=Physo127770.4;Parent=Physo127770;constitutive=1;rank=4 scaffold_2 . CDS 1467971 1468549 . + 0 ID=Physo127770;Parent=Physo127770;rank=5 scaffold_2 . exon 1467971 1468549 . + . ID=Physo127770.5;Parent=Physo127770;constitutive=1;rank=5 scaffold_2 . CDS 1468785 1468802 . + 0 ID=Physo127770;Parent=Physo127770;rank=6 scaffold_2 . exon 1468785 1468802 . + . ID=Physo127770.6;Parent=Physo127770;constitutive=1;rank=6 scaffold_2 ensembl protein_coding_gene 1471027 1472412 . - . ID=Physo127771;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20347;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1471027 1472412 . - . ID=Physo127771;Parent=Physo127771;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1471027 1472412 . - 0 ID=Physo127771;Parent=Physo127771;rank=1 scaffold_2 . exon 1471027 1472412 . - . ID=Physo127771.1;Parent=Physo127771;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1473116 1474390 . + . ID=Physo127772;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20348;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1473116 1474390 . + . ID=Physo127772;Parent=Physo127772;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1473116 1474390 . + 0 ID=Physo127772;Parent=Physo127772;rank=1 scaffold_2 . exon 1473116 1474390 . + . ID=Physo127772.1;Parent=Physo127772;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1477916 1479145 . + . ID=Physo108210;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_20042;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1477916 1479145 . + . ID=Physo108210;Parent=Physo108210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1477916 1478058 . + . ID=Physo108210.1;Parent=Physo108210;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1477934 1478058 . + 0 ID=Physo108210;Parent=Physo108210;rank=1 scaffold_2 . CDS 1478148 1478204 . + 0 ID=Physo108210;Parent=Physo108210;rank=2 scaffold_2 . exon 1478148 1478204 . + . ID=Physo108210.2;Parent=Physo108210;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_2 . CDS 1478250 1478326 . + 0 ID=Physo108210;Parent=Physo108210;rank=3 scaffold_2 . exon 1478250 1478326 . + . ID=Physo108210.3;Parent=Physo108210;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_2 . CDS 1478408 1478663 . + 0 ID=Physo108210;Parent=Physo108210;rank=4 scaffold_2 . exon 1478408 1478663 . + . ID=Physo108210.4;Parent=Physo108210;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_2 . CDS 1478731 1478875 . + 0 ID=Physo108210;Parent=Physo108210;rank=5 scaffold_2 . exon 1478731 1478875 . + . ID=Physo108210.5;Parent=Physo108210;constitutive=1;ensembl_phase=2;rank=5 scaffold_2 . CDS 1478950 1479090 . + 0 ID=Physo108210;Parent=Physo108210;rank=6 scaffold_2 . exon 1478950 1479145 . + . ID=Physo108210.6;Parent=Physo108210;constitutive=1;ensembl_end_phase=-1;rank=6 scaffold_2 ensembl protein_coding_gene 1475835 1476988 . + . ID=Physo127773;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20349;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1475835 1476988 . + . ID=Physo127773;Parent=Physo127773;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1475835 1475949 . + 0 ID=Physo127773;Parent=Physo127773;rank=1 scaffold_2 . exon 1475835 1475949 . + . ID=Physo127773.1;Parent=Physo127773;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 1476030 1476988 . + 0 ID=Physo127773;Parent=Physo127773;rank=2 scaffold_2 . exon 1476030 1476988 . + . ID=Physo127773.2;Parent=Physo127773;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 1477137 1477742 . - . ID=Physo127774;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20350;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1477137 1477742 . - . ID=Physo127774;Parent=Physo127774;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1477137 1477742 . - 0 ID=Physo127774;Parent=Physo127774;rank=1 scaffold_2 . exon 1477137 1477742 . - . ID=Physo127774.1;Parent=Physo127774;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1479311 1489394 . - . ID=Physo127776;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20352;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1479311 1489394 . - . ID=Physo127776;Parent=Physo127776;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1479311 1479876 . - 0 ID=Physo127776;Parent=Physo127776;rank=5 scaffold_2 . exon 1479311 1479876 . - . ID=Physo127776.5;Parent=Physo127776;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . CDS 1479957 1486521 . - 0 ID=Physo127776;Parent=Physo127776;rank=4 scaffold_2 . exon 1479957 1486521 . - . ID=Physo127776.4;Parent=Physo127776;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_2 . CDS 1486573 1486697 . - 0 ID=Physo127776;Parent=Physo127776;rank=3 scaffold_2 . CDS 1486740 1489262 . - 0 ID=Physo127776;Parent=Physo127776;rank=2 scaffold_2 . CDS 1489343 1489394 . - 0 ID=Physo127776;Parent=Physo127776;rank=1 scaffold_2 . biological_region 1488403 1488406 0.999 + . logic_name=eponine scaffold_2 . biological_region 1488740 1488743 0.999 + . logic_name=eponine scaffold_2 . biological_region 1488779 1488780 0.999 + . logic_name=eponine scaffold_2 . biological_region 1488807 1488811 0.999 + . logic_name=eponine scaffold_2 . biological_region 1489058 1489061 0.999 + . logic_name=eponine scaffold_2 . biological_region 1489219 1489222 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1489686 1489736 . ? . description=dust scaffold_2 . repeat_region 1489686 1489736 . ? . description=trf scaffold_2 . biological_region 1492009 1492009 0.999 + . logic_name=eponine scaffold_2 . biological_region 1492608 1492611 0.999 - . logic_name=eponine scaffold_2 . biological_region 1493501 1493508 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1489749 1490390 . - . ID=Physo110390;biotype=protein_coding;external_name=estExt_Genewise1.C_20236;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1489749 1490390 . - . ID=Physo110390;Parent=Physo110390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1489749 1490327 . - 0 ID=Physo110390;Parent=Physo110390;rank=1 scaffold_2 . exon 1489749 1490390 . - . ID=Physo110390.1;Parent=Physo110390;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . exon 1486573 1486697 . - . ID=Physo127776.3;Parent=Physo127776;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . exon 1486740 1489262 . - . ID=Physo127776.2;Parent=Physo127776;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_2 . exon 1489343 1489394 . - . ID=Physo127776.1;Parent=Physo127776;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1490433 1491740 . - . ID=Physo127778;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20354;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1490433 1491740 . - . ID=Physo127778;Parent=Physo127778;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1490433 1490756 . - 0 ID=Physo127778;Parent=Physo127778;rank=5 scaffold_2 . exon 1490433 1490756 . - . ID=Physo127778.5;Parent=Physo127778;constitutive=1;rank=5 scaffold_2 . CDS 1490837 1490959 . - 0 ID=Physo127778;Parent=Physo127778;rank=4 scaffold_2 . exon 1490837 1490959 . - . ID=Physo127778.4;Parent=Physo127778;constitutive=1;rank=4 scaffold_2 . CDS 1491036 1491143 . - 0 ID=Physo127778;Parent=Physo127778;rank=3 scaffold_2 . exon 1491036 1491143 . - . ID=Physo127778.3;Parent=Physo127778;constitutive=1;rank=3 scaffold_2 . CDS 1491214 1491332 . - 0 ID=Physo127778;Parent=Physo127778;rank=2 scaffold_2 . exon 1491214 1491332 . - . ID=Physo127778.2;Parent=Physo127778;constitutive=1;ensembl_phase=1;rank=2 scaffold_2 . CDS 1491611 1491740 . - 0 ID=Physo127778;Parent=Physo127778;rank=1 scaffold_2 . exon 1491611 1491740 . - . ID=Physo127778.1;Parent=Physo127778;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 ensembl protein_coding_gene 1492188 1493238 . + . ID=Physo127779;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20355;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1492188 1493238 . + . ID=Physo127779;Parent=Physo127779;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1492188 1493013 . + 0 ID=Physo127779;Parent=Physo127779;rank=1 scaffold_2 . exon 1492188 1493013 . + . ID=Physo127779.1;Parent=Physo127779;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . CDS 1493092 1493237 . + 0 ID=Physo127779;Parent=Physo127779;rank=2 scaffold_2 . exon 1493092 1493238 . + . ID=Physo127779.2;Parent=Physo127779;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_2 ensembl protein_coding_gene 1493946 1496800 . + . ID=Physo127780;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20356;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1493946 1496800 . + . ID=Physo127780;Parent=Physo127780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1493946 1494100 . + 0 ID=Physo127780;Parent=Physo127780;rank=1 scaffold_2 . exon 1493946 1494100 . + . ID=Physo127780.1;Parent=Physo127780;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_2 . CDS 1494189 1494726 . + 0 ID=Physo127780;Parent=Physo127780;rank=2 scaffold_2 . exon 1494189 1494726 . + . ID=Physo127780.2;Parent=Physo127780;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1494801 1495007 . + 0 ID=Physo127780;Parent=Physo127780;rank=3 scaffold_2 . exon 1494801 1495007 . + . ID=Physo127780.3;Parent=Physo127780;constitutive=1;rank=3 scaffold_2 . CDS 1495119 1495447 . + 0 ID=Physo127780;Parent=Physo127780;rank=4 scaffold_2 . exon 1495119 1495447 . + . ID=Physo127780.4;Parent=Physo127780;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_2 . CDS 1495526 1495825 . + 0 ID=Physo127780;Parent=Physo127780;rank=5 scaffold_2 . exon 1495526 1495825 . + . ID=Physo127780.5;Parent=Physo127780;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_2 . CDS 1495910 1495991 . + 0 ID=Physo127780;Parent=Physo127780;rank=6 scaffold_2 . exon 1495910 1495991 . + . ID=Physo127780.6;Parent=Physo127780;constitutive=1;ensembl_phase=2;rank=6 scaffold_2 . CDS 1496080 1496175 . + 0 ID=Physo127780;Parent=Physo127780;rank=7 scaffold_2 . exon 1496080 1496175 . + . ID=Physo127780.7;Parent=Physo127780;constitutive=1;rank=7 scaffold_2 . CDS 1496270 1496416 . + 0 ID=Physo127780;Parent=Physo127780;rank=8 scaffold_2 . exon 1496270 1496800 . + . ID=Physo127780.8;Parent=Physo127780;constitutive=1;ensembl_end_phase=-1;rank=8 scaffold_2 ensembl pseudogene 1497075 1498051 . - . ID=Physo127781;biotype=pseudogene;external_name=estExt_fgenesh1_pg.C_20357;logic_name=jgi_physo1_1 scaffold_2 ensembl pseudogene 1497075 1498051 . - . ID=Physo127781;Parent=Physo127781;biotype=pseudogene;logic_name=jgi_physo1_1 scaffold_2 . exon 1497075 1498051 . - . ID=Physo127781.1;Parent=Physo127781;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 1502234 1503601 . + . ID=Physo127782;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20358;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1502234 1503601 . + . ID=Physo127782;Parent=Physo127782;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1502234 1502445 . + . ID=Physo127782.1;Parent=Physo127782;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1502237 1502445 . + 0 ID=Physo127782;Parent=Physo127782;rank=1 scaffold_2 . CDS 1502511 1503295 . + 0 ID=Physo127782;Parent=Physo127782;rank=2 scaffold_2 . exon 1502511 1503295 . + . ID=Physo127782.2;Parent=Physo127782;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_2 . CDS 1503366 1503427 . + 0 ID=Physo127782;Parent=Physo127782;rank=3 scaffold_2 . exon 1503366 1503427 . + . ID=Physo127782.3;Parent=Physo127782;constitutive=1;ensembl_phase=1;rank=3 scaffold_2 . CDS 1503497 1503601 . + 0 ID=Physo127782;Parent=Physo127782;rank=4 scaffold_2 . exon 1503497 1503601 . + . ID=Physo127782.4;Parent=Physo127782;constitutive=1;rank=4 scaffold_2 ensembl protein_coding_gene 1503775 1504650 . - . ID=Physo127783;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20359;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1503775 1504650 . - . ID=Physo127783;Parent=Physo127783;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1503775 1504650 . - 0 ID=Physo127783;Parent=Physo127783;rank=1 scaffold_2 . exon 1503775 1504650 . - . ID=Physo127783.1;Parent=Physo127783;constitutive=1;rank=1 scaffold_2 . repeat_region 1504095 1504140 . ? . description=trf scaffold_2 . biological_region 1504366 1504368 0.999 + . logic_name=eponine scaffold_2 . biological_region 1506003 1506010 0.999 + . logic_name=eponine scaffold_2 . biological_region 1506063 1506065 0.999 - . logic_name=eponine scaffold_2 . biological_region 1506086 1506089 0.999 - . logic_name=eponine scaffold_2 . biological_region 1506125 1506130 0.999 - . logic_name=eponine scaffold_2 . biological_region 1506139 1506147 0.999 + . logic_name=eponine scaffold_2 . biological_region 1506162 1506164 0.999 - . logic_name=eponine scaffold_2 . biological_region 1506200 1506200 0.999 - . logic_name=eponine scaffold_2 . biological_region 1506279 1506282 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1506676 1506739 . ? . description=dust scaffold_2 . biological_region 1510327 1510330 0.999 - . logic_name=eponine scaffold_2 . biological_region 1510409 1510409 0.999 + . logic_name=eponine scaffold_2 . biological_region 1510445 1510447 0.999 + . logic_name=eponine scaffold_2 . biological_region 1510462 1510470 0.999 - . logic_name=eponine scaffold_2 . biological_region 1510479 1510484 0.999 + . logic_name=eponine scaffold_2 . biological_region 1510520 1510523 0.999 + . logic_name=eponine scaffold_2 . biological_region 1510544 1510546 0.999 + . logic_name=eponine scaffold_2 . biological_region 1510599 1510606 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1511677 1511728 . ? . description=dust scaffold_2 . repeat_region 1512739 1512771 . ? . description=trf scaffold_2 ensembl tRNA_gene 1510993 1511070 . + . ID=EPrPSOG00000000059;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_2 ensembl transcript 1510993 1511070 . + . ID=EPrPSOT00000000059;Parent=EPrPSOG00000000059;biotype=tRNA;logic_name=ncrna_eg scaffold_2 ensembl tRNA_gene 1505538 1505615 . - . ID=EPrPSOG00000000230;biotype=tRNA;description=tRNA-Leu for anticodon CAG [Source:TRNASCAN_SE%3BAcc:tRNA-Leu];external_name=tRNA-Leu;logic_name=ncrna_eg scaffold_2 ensembl transcript 1505538 1505615 . - . ID=EPrPSOT00000000230;Parent=EPrPSOG00000000230;biotype=tRNA;logic_name=ncrna_eg scaffold_2 . exon 1510993 1511070 . + . ID=EPrPSOE00000000059;Parent=EPrPSOT00000000059;constitutive=1;rank=1 scaffold_2 . exon 1505538 1505615 . - . ID=EPrPSOE00000000230;Parent=EPrPSOT00000000230;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1506029 1507151 . + . ID=Physo127784;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20360;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1506029 1507151 . + . ID=Physo127784;Parent=Physo127784;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . exon 1506029 1507151 . + . ID=Physo127784.1;Parent=Physo127784;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 . CDS 1506033 1507151 . + 0 ID=Physo127784;Parent=Physo127784;rank=1 scaffold_2 ensembl protein_coding_gene 1509448 1510579 . - . ID=Physo127785;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20361;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1509448 1510579 . - . ID=Physo127785;Parent=Physo127785;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1509448 1510575 . - 0 ID=Physo127785;Parent=Physo127785;rank=1 scaffold_2 . exon 1509448 1510579 . - . ID=Physo127785.1;Parent=Physo127785;constitutive=1;ensembl_phase=-1;rank=1 scaffold_2 ensembl protein_coding_gene 1518300 1518668 . + . ID=Physo127786;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20362;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1518300 1518668 . + . ID=Physo127786;Parent=Physo127786;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1518300 1518668 . + 0 ID=Physo127786;Parent=Physo127786;rank=1 scaffold_2 . exon 1518300 1518668 . + . ID=Physo127786.1;Parent=Physo127786;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1518975 1519807 . + . ID=Physo127787;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20363;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1518975 1519807 . + . ID=Physo127787;Parent=Physo127787;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1518975 1519118 . + 0 ID=Physo127787;Parent=Physo127787;rank=1 scaffold_2 . exon 1518975 1519118 . + . ID=Physo127787.1;Parent=Physo127787;constitutive=1;rank=1 scaffold_2 . CDS 1519350 1519459 . + 0 ID=Physo127787;Parent=Physo127787;rank=2 scaffold_2 . exon 1519350 1519459 . + . ID=Physo127787.2;Parent=Physo127787;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_2 . CDS 1519522 1519807 . + 0 ID=Physo127787;Parent=Physo127787;rank=3 scaffold_2 . exon 1519522 1519807 . + . ID=Physo127787.3;Parent=Physo127787;constitutive=1;ensembl_phase=2;rank=3 scaffold_2 . biological_region 1524857 1524858 0.999 + . logic_name=eponine scaffold_2 . repeat_region 1525336 1525375 . ? . description=dust scaffold_2 . repeat_region 1525374 1525487 . ? . description=trf scaffold_2 . biological_region 1526368 1526369 0.999 - . logic_name=eponine scaffold_2 . repeat_region 1527262 1527491 . + . description=Sola3-2_PS scaffold_2 . repeat_region 1528308 1528527 . + . description=Sola3-2_PS scaffold_2 . biological_region 1533000 1533003 0.999 - . logic_name=eponine scaffold_2 . biological_region 1533014 1533015 0.999 + . logic_name=eponine scaffold_2 . biological_region 1533028 1533029 0.999 - . logic_name=eponine scaffold_2 ensembl protein_coding_gene 1524309 1525268 . + . ID=Physo127788;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20364;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1524309 1525268 . + . ID=Physo127788;Parent=Physo127788;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1524309 1525268 . + 0 ID=Physo127788;Parent=Physo127788;rank=1 scaffold_2 . exon 1524309 1525268 . + . ID=Physo127788.1;Parent=Physo127788;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1525495 1526287 . - . ID=Physo127789;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20365;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1525495 1526287 . - . ID=Physo127789;Parent=Physo127789;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1525495 1525785 . - 0 ID=Physo127789;Parent=Physo127789;rank=3 scaffold_2 . exon 1525495 1525785 . - . ID=Physo127789.3;Parent=Physo127789;constitutive=1;rank=3 scaffold_2 . CDS 1525984 1526163 . - 0 ID=Physo127789;Parent=Physo127789;rank=2 scaffold_2 . exon 1525984 1526163 . - . ID=Physo127789.2;Parent=Physo127789;constitutive=1;rank=2 scaffold_2 . CDS 1526228 1526287 . - 0 ID=Physo127789;Parent=Physo127789;rank=1 scaffold_2 . exon 1526228 1526287 . - . ID=Physo127789.1;Parent=Physo127789;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1527692 1528081 . - . ID=Physo127790;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20366;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1527692 1528081 . - . ID=Physo127790;Parent=Physo127790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1527692 1528081 . - 0 ID=Physo127790;Parent=Physo127790;rank=1 scaffold_2 . exon 1527692 1528081 . - . ID=Physo127790.1;Parent=Physo127790;constitutive=1;rank=1 scaffold_2 ensembl protein_coding_gene 1531690 1536048 . - . ID=Physo127791;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_20367;logic_name=jgi_physo1_1 scaffold_2 ensembl transcript 1531690 1536048 . - . ID=Physo127791;Parent=Physo127791;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_2 . CDS 1531690 1532130 . - 0 ID=Physo127791;Parent=Physo127791;rank=13 scaffold_2 . exon 1531690 1532130 . - . ID=Physo127791.13;Parent=Physo127791;constitutive=1;rank=13 scaffold_2 . CDS 1532176 1532298 . - 0 ID=Physo127791;Parent=Physo127791;rank=12 scaffold_2 . exon 1532176 1532298 . - . ID=Physo127791.12;Parent=Physo127791;constitutive=1;rank=12 scaffold_2 . CDS 1532667 1533304 . - 0 ID=Physo127791;Parent=Physo127791;rank=11 scaffold_2 . exon 1532667 1533304 . - . ID=Physo127791.11;Parent=Physo127791;constitutive=1;ensembl_phase=1;rank=11 scaffold_2 . CDS 1533437 1533455 . - 0 ID=Physo127791;Parent=Physo127791;rank=10 scaffold_2 . exon 1533437 1533455 . - . ID=Physo127791.10;Parent=Physo127791;constitutive=1;ensembl_end_phase=1;rank=10 scaffold_2 . CDS 1533534 1533652 . - 0 ID=Physo127791;Parent=Physo127791;rank=9 scaffold_2 . exon 1533534 1533652 . - . ID=Physo127791.9;Parent=Physo127791;constitutive=1;ensembl_phase=1;rank=9 scaffold_2 . CDS 1533705 1533747 . - 0 ID=Physo127791;Parent=Physo127791;rank=8 scaffold_2 . CDS 1533787 1534073 . - 0 ID=Physo127791;Parent=Physo127791;rank=7 scaffold_2 . CDS 1534117 1534396 . - 0 ID=Physo127791;Parent=Physo127791;rank=6 scaffold_2 . CDS 1534458 1534459 . - 0 ID=Physo127791;Parent=Physo127791;rank=5 scaffold_2 . CDS 1534732 1535006 . - 0 ID=Physo127791;Parent=Physo127791;rank=4 scaffold_2 . CDS 1535051 1535346 . - 0 ID=Physo127791;Parent=Physo127791;rank=3 scaffold_2 . CDS 1535402 1535510 . - 0 ID=Physo127791;Parent=Physo127791;rank=2 scaffold_2 . CDS 1535741 1536048 . - 0 ID=Physo127791;Parent=Physo127791;rank=1 scaffold_2 ensembl tRNA_gene 1543361 1543432 . + . ID=EPrPSOG00000000052;biotype=tRNA;description=tRNA-Pro for anticodon UGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_2 ensembl transcript 1543361 1543432 . + . ID=EPrPSOT00000000052;Parent=EPrPSOG00000000052;biotype=tRNA;logic_name=ncrna_eg scaffold_2 ensembl tRNA_gene 1542964 1543035 . + . ID=EPrPSOG00000000156;biotype=tRNA;description=tRNA-Pro for anticodon UGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_2 ensembl transcript 1542964 1543035 . + . ID=EPrPSOT00000000156;Parent=EPrPSOG00000000156;biotype=tRNA;logic_name=ncrna_eg scaffold_2 ensembl tRNA_gene 1542577 1542648 . + . ID=EPrPSOG00000000178;biotype=tRNA;description=tRNA-Pro for anticodon UGG [Source:TRNASCAN_SE%3BAcc:tRNA-Pro];external_name=tRNA-Pro;logic_name=ncrna_eg scaffold_2 ensembl transcript 1542577 1542648 . + . ID=EPrPSOT00000000178;Parent=EPrPSOG00000000178;biotype=tRNA;logic_name=ncrna_eg scaffold_2 ensembl tRNA_gene 1542102 1542174 . + . ID=EPrPSOG00000000236;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_2 ensembl transcript 1542102 1542174 . + . ID=EPrPSOT00000000236;Parent=EPrPSOG00000000236;biotype=tRNA;logic_name=ncrna_eg scaffold_2 . exon 1543361 1543432 . + . ID=EPrPSOE00000000052;Parent=EPrPSOT00000000052;constitutive=1;rank=1 scaffold_2 . exon 1542964 1543035 . + . ID=EPrPSOE00000000156;Parent=EPrPSOT00000000156;constitutive=1;rank=1 scaffold_2 . exon 1542577 1542648 . + . ID=EPrPSOE00000000178;Parent=EPrPSOT00000000178;constitutive=1;rank=1 scaffold_2 . exon 1542102 1542174 . + . ID=EPrPSOE00000000236;Parent=EPrPSOT00000000236;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_2 . exon 1533705 1533747 . - . ID=Physo127791.8;Parent=Physo127791;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_2 . exon 1533787 1534073 . - . ID=Physo127791.7;Parent=Physo127791;constitutive=1;ensembl_phase=1;rank=7 scaffold_2 . exon 1534117 1534396 . - . ID=Physo127791.6;Parent=Physo127791;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_2 . exon 1534458 1534459 . - . ID=Physo127791.5;Parent=Physo127791;constitutive=1;ensembl_phase=1;rank=5 scaffold_2 . exon 1534732 1535006 . - . ID=Physo127791.4;Parent=Physo127791;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_2 . exon 1535051 1535346 . - . ID=Physo127791.3;Parent=Physo127791;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_2 . exon 1535402 1535510 . - . ID=Physo127791.2;Parent=Physo127791;constitutive=1;ensembl_phase=2;rank=2 scaffold_2 . exon 1535741 1536048 . - . ID=Physo127791.1;Parent=Physo127791;constitutive=1;ensembl_end_phase=2;rank=1 ##gff-version 3 ##sequence-region scaffold_1 1 1667745 scaffold_1 . repeat_region 1378 2718 . ? . description=dust scaffold_1 . repeat_region 3548 3739 . ? . description=trf scaffold_1 . repeat_region 4538 7084 . ? . description=dust scaffold_1 . repeat_region 7423 7474 . ? . description=dust scaffold_1 . biological_region 7951 7955 0.999 - . logic_name=eponine scaffold_1 . repeat_region 8093 9076 . ? . description=dust scaffold_1 ensembl protein_coding_gene 15493 16195 . + . ID=Physo127021;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10001;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 15493 16195 . + . ID=Physo127021;Parent=Physo127021;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 15493 15521 . + 0 ID=Physo127021;Parent=Physo127021;rank=1 scaffold_1 . exon 15493 15521 . + . ID=Physo127021.1;Parent=Physo127021;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 15582 15813 . + 0 ID=Physo127021;Parent=Physo127021;rank=2 scaffold_1 . exon 15582 15813 . + . ID=Physo127021.2;Parent=Physo127021;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 15876 15937 . + 0 ID=Physo127021;Parent=Physo127021;rank=3 scaffold_1 . exon 15876 15937 . + . ID=Physo127021.3;Parent=Physo127021;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 15979 16195 . + 0 ID=Physo127021;Parent=Physo127021;rank=4 scaffold_1 . exon 15979 16195 . + . ID=Physo127021.4;Parent=Physo127021;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 ensembl protein_coding_gene 18474 20658 . + . ID=Physo127022;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10002;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 18474 20658 . + . ID=Physo127022;Parent=Physo127022;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 18474 18483 . + 0 ID=Physo127022;Parent=Physo127022;rank=1 scaffold_1 . exon 18474 18483 . + . ID=Physo127022.1;Parent=Physo127022;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 18662 18894 . + 0 ID=Physo127022;Parent=Physo127022;rank=2 scaffold_1 . exon 18662 18894 . + . ID=Physo127022.2;Parent=Physo127022;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 19231 20658 . + 0 ID=Physo127022;Parent=Physo127022;rank=3 scaffold_1 . exon 19231 20658 . + . ID=Physo127022.3;Parent=Physo127022;constitutive=1;rank=3 scaffold_1 . repeat_region 20011 20178 . - . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 20416 23574 . - . description=GypsyPi-1c_I-int scaffold_1 . biological_region 23623 23625 0.999 - . logic_name=eponine scaffold_1 . biological_region 23735 23740 0.999 - . logic_name=eponine scaffold_1 . repeat_region 23972 24290 . ? . description=trf scaffold_1 . repeat_region 24389 25733 . - . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 25986 26012 . ? . description=trf scaffold_1 . repeat_region 28844 28851 . ? . description=dust scaffold_1 ensembl protein_coding_gene 21084 25772 . - . ID=Physo127023;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10003;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 21084 25772 . - . ID=Physo127023;Parent=Physo127023;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 21084 21379 . - 0 ID=Physo127023;Parent=Physo127023;rank=5 scaffold_1 . exon 21084 21379 . - . ID=Physo127023.5;Parent=Physo127023;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 21407 21475 . - 0 ID=Physo127023;Parent=Physo127023;rank=4 scaffold_1 . exon 21407 21475 . - . ID=Physo127023.4;Parent=Physo127023;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 21507 23483 . - 0 ID=Physo127023;Parent=Physo127023;rank=3 scaffold_1 . exon 21507 23483 . - . ID=Physo127023.3;Parent=Physo127023;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 23613 24815 . - 0 ID=Physo127023;Parent=Physo127023;rank=2 scaffold_1 . exon 23613 24815 . - . ID=Physo127023.2;Parent=Physo127023;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 24977 25772 . - 0 ID=Physo127023;Parent=Physo127023;rank=1 scaffold_1 . exon 24977 25772 . - . ID=Physo127023.1;Parent=Physo127023;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . biological_region 40106 40108 0.999 + . logic_name=eponine scaffold_1 . repeat_region 46210 46224 . ? . description=dust scaffold_1 . biological_region 47020 47025 0.999 + . logic_name=eponine scaffold_1 . biological_region 47052 47055 0.999 + . logic_name=eponine scaffold_1 . biological_region 47157 47161 0.999 + . logic_name=eponine scaffold_1 . biological_region 47273 47275 0.999 + . logic_name=eponine scaffold_1 . biological_region 47422 47427 0.999 - . logic_name=eponine scaffold_1 . biological_region 47445 47448 0.999 - . logic_name=eponine scaffold_1 . biological_region 47468 47476 0.999 - . logic_name=eponine scaffold_1 . biological_region 47478 47484 0.999 + . logic_name=eponine scaffold_1 . biological_region 47487 47496 0.999 - . logic_name=eponine scaffold_1 . biological_region 47512 47514 0.999 - . logic_name=eponine scaffold_1 . biological_region 47525 47529 0.999 + . logic_name=eponine scaffold_1 . biological_region 47757 47762 0.999 - . logic_name=eponine scaffold_1 . repeat_region 49650 49658 . ? . description=dust scaffold_1 ensembl protein_coding_gene 42454 42639 . + . ID=Physo110118;biotype=protein_coding;external_name=estExt_Genewise1.C_10356;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 42454 42639 . + . ID=Physo110118;Parent=Physo110118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 42454 42639 . + 0 ID=Physo110118;Parent=Physo110118;rank=1 scaffold_1 . exon 42454 42639 . + . ID=Physo110118.1;Parent=Physo110118;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 46312 47991 . - . ID=Physo127024;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10004;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 46312 47991 . - . ID=Physo127024;Parent=Physo127024;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 46312 47991 . - . ID=Physo127024.1;Parent=Physo127024;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 46349 47944 . - 0 ID=Physo127024;Parent=Physo127024;rank=1 scaffold_1 ensembl protein_coding_gene 55948 56790 . - . ID=Physo127025;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10005;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 55948 56790 . - . ID=Physo127025;Parent=Physo127025;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 55948 56790 . - 0 ID=Physo127025;Parent=Physo127025;rank=1 scaffold_1 . exon 55948 56790 . - . ID=Physo127025.1;Parent=Physo127025;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 57493 59175 . + . ID=Physo127026;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10006;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 57493 59175 . + . ID=Physo127026;Parent=Physo127026;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 57493 59175 . + 0 ID=Physo127026;Parent=Physo127026;rank=1 scaffold_1 . exon 57493 59175 . + . ID=Physo127026.1;Parent=Physo127026;constitutive=1;rank=1 scaffold_1 . repeat_region 61126 61134 . ? . description=dust scaffold_1 . biological_region 63629 63632 0.999 + . logic_name=eponine scaffold_1 . repeat_region 63975 63986 . ? . description=dust scaffold_1 . repeat_region 63990 63997 . ? . description=dust scaffold_1 . repeat_region 69375 69552 . ? . description=trf scaffold_1 . biological_region 69532 69534 0.999 - . logic_name=eponine scaffold_1 . repeat_region 70785 70825 . - . description=GypsyPi-1c_I-int scaffold_1 ensembl protein_coding_gene 72018 72383 . - . ID=Physo127027;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10007;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 72018 72383 . - . ID=Physo127027;Parent=Physo127027;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 72018 72383 . - 0 ID=Physo127027;Parent=Physo127027;rank=1 scaffold_1 . exon 72018 72383 . - . ID=Physo127027.1;Parent=Physo127027;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 73357 74229 . - . ID=Physo127028;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10008;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 73357 74229 . - . ID=Physo127028;Parent=Physo127028;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 73357 74229 . - 0 ID=Physo127028;Parent=Physo127028;rank=1 scaffold_1 . exon 73357 74229 . - . ID=Physo127028.1;Parent=Physo127028;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 74437 75276 . - . ID=Physo127029;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10009;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 74437 75276 . - . ID=Physo127029;Parent=Physo127029;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 74437 75276 . - 0 ID=Physo127029;Parent=Physo127029;rank=1 scaffold_1 . exon 74437 75276 . - . ID=Physo127029.1;Parent=Physo127029;constitutive=1;rank=1 scaffold_1 . repeat_region 80263 80270 . ? . description=dust scaffold_1 . repeat_region 80563 80572 . ? . description=dust scaffold_1 . repeat_region 80641 80660 . ? . description=trf scaffold_1 . biological_region 82834 82837 0.999 - . logic_name=eponine scaffold_1 . repeat_region 87244 87284 . ? . description=dust scaffold_1 . repeat_region 87244 87284 . ? . description=trf scaffold_1 . repeat_region 87856 87945 . ? . description=trf scaffold_1 . repeat_region 87887 87946 . ? . description=dust scaffold_1 . repeat_region 87890 87946 . ? . description=trf scaffold_1 . repeat_region 88667 88749 . ? . description=trf scaffold_1 . repeat_region 88672 88740 . ? . description=trf scaffold_1 . repeat_region 88683 88745 . ? . description=trf scaffold_1 . repeat_region 88769 88788 . ? . description=trf scaffold_1 . biological_region 88989 88992 0.999 + . logic_name=eponine scaffold_1 . biological_region 89604 89609 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 86025 86872 . + . ID=Physo127030;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10010;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 86025 86872 . + . ID=Physo127030;Parent=Physo127030;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 86025 86553 . + 0 ID=Physo127030;Parent=Physo127030;rank=1 scaffold_1 . exon 86025 86553 . + . ID=Physo127030.1;Parent=Physo127030;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 86628 86872 . + 0 ID=Physo127030;Parent=Physo127030;rank=2 scaffold_1 . exon 86628 86872 . + . ID=Physo127030.2;Parent=Physo127030;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 87462 88356 . + . ID=Physo127031;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10011;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 87462 88356 . + . ID=Physo127031;Parent=Physo127031;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 87462 87575 . + 0 ID=Physo127031;Parent=Physo127031;rank=1 scaffold_1 . exon 87462 87575 . + . ID=Physo127031.1;Parent=Physo127031;constitutive=1;rank=1 scaffold_1 . CDS 87674 88267 . + 0 ID=Physo127031;Parent=Physo127031;rank=2 scaffold_1 . exon 87674 88356 . + . ID=Physo127031.2;Parent=Physo127031;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1 ensembl protein_coding_gene 88349 89894 . - . ID=Physo127032;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10012;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 88349 89894 . - . ID=Physo127032;Parent=Physo127032;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 88349 89411 . - . ID=Physo127032.3;Parent=Physo127032;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_1 . CDS 88405 89411 . - 0 ID=Physo127032;Parent=Physo127032;rank=3 scaffold_1 . CDS 89494 89669 . - 0 ID=Physo127032;Parent=Physo127032;rank=2 scaffold_1 . exon 89494 89669 . - . ID=Physo127032.2;Parent=Physo127032;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 89782 89894 . - 0 ID=Physo127032;Parent=Physo127032;rank=1 scaffold_1 . exon 89782 89894 . - . ID=Physo127032.1;Parent=Physo127032;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 97229 98839 . - . ID=Physo127034;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10014;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 97229 98839 . - . ID=Physo127034;Parent=Physo127034;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 97229 98839 . - 0 ID=Physo127034;Parent=Physo127034;rank=1 scaffold_1 . exon 97229 98839 . - . ID=Physo127034.1;Parent=Physo127034;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 99195 100205 . - . ID=Physo127035;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10015;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 99195 100205 . - . ID=Physo127035;Parent=Physo127035;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 99195 100205 . - 0 ID=Physo127035;Parent=Physo127035;rank=1 scaffold_1 . exon 99195 100205 . - . ID=Physo127035.1;Parent=Physo127035;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 90557 92908 . + . ID=Physo155201;biotype=protein_coding;external_name=C_scaffold_1000005;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 90557 92908 . + . ID=Physo155201;Parent=Physo155201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 90557 91039 . + 0 ID=Physo155201;Parent=Physo155201;rank=1 scaffold_1 . exon 90557 91039 . + . ID=Physo155201.1;Parent=Physo155201;constitutive=1;rank=1 scaffold_1 . CDS 91152 91362 . + 0 ID=Physo155201;Parent=Physo155201;rank=2 scaffold_1 . exon 91152 91362 . + . ID=Physo155201.2;Parent=Physo155201;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 91425 91514 . + 0 ID=Physo155201;Parent=Physo155201;rank=3 scaffold_1 . exon 91425 91514 . + . ID=Physo155201.3;Parent=Physo155201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 91584 91677 . + 0 ID=Physo155201;Parent=Physo155201;rank=4 scaffold_1 . exon 91584 91677 . + . ID=Physo155201.4;Parent=Physo155201;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 91729 92141 . + 0 ID=Physo155201;Parent=Physo155201;rank=5 scaffold_1 . exon 91729 92141 . + . ID=Physo155201.5;Parent=Physo155201;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 92238 92456 . + 0 ID=Physo155201;Parent=Physo155201;rank=6 scaffold_1 . exon 92238 92456 . + . ID=Physo155201.6;Parent=Physo155201;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 92646 92908 . + 0 ID=Physo155201;Parent=Physo155201;rank=7 scaffold_1 . exon 92646 92908 . + . ID=Physo155201.7;Parent=Physo155201;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . biological_region 100015 100018 0.999 + . logic_name=eponine scaffold_1 . biological_region 100053 100059 0.999 + . logic_name=eponine scaffold_1 . biological_region 100078 100083 0.999 + . logic_name=eponine scaffold_1 . biological_region 100087 100092 0.999 - . logic_name=eponine scaffold_1 . biological_region 100115 100118 0.999 + . logic_name=eponine scaffold_1 . biological_region 100168 100170 0.999 - . logic_name=eponine scaffold_1 . biological_region 100187 100189 0.999 - . logic_name=eponine scaffold_1 . biological_region 100774 100777 0.999 + . logic_name=eponine scaffold_1 . biological_region 102803 102806 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 103090 108951 . - . ID=Physo127037;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10017;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 103090 108951 . - . ID=Physo127037;Parent=Physo127037;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 103090 107664 . - . ID=Physo127037.5;Parent=Physo127037;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=5 scaffold_1 . CDS 103281 107664 . - 0 ID=Physo127037;Parent=Physo127037;rank=5 scaffold_1 . CDS 107751 108160 . - 0 ID=Physo127037;Parent=Physo127037;rank=4 scaffold_1 . exon 107751 108160 . - . ID=Physo127037.4;Parent=Physo127037;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 108260 108624 . - 0 ID=Physo127037;Parent=Physo127037;rank=3 scaffold_1 . exon 108260 108624 . - . ID=Physo127037.3;Parent=Physo127037;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 108704 108767 . - 0 ID=Physo127037;Parent=Physo127037;rank=2 scaffold_1 . exon 108704 108767 . - . ID=Physo127037.2;Parent=Physo127037;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 108841 108951 . - 0 ID=Physo127037;Parent=Physo127037;rank=1 scaffold_1 . exon 108841 108951 . - . ID=Physo127037.1;Parent=Physo127037;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 109143 111604 . + . ID=Physo127038;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10018;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 109143 111604 . + . ID=Physo127038;Parent=Physo127038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 109143 109537 . + 0 ID=Physo127038;Parent=Physo127038;rank=1 scaffold_1 . exon 109143 109537 . + . ID=Physo127038.1;Parent=Physo127038;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 109622 109805 . + 0 ID=Physo127038;Parent=Physo127038;rank=2 scaffold_1 . exon 109622 109805 . + . ID=Physo127038.2;Parent=Physo127038;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 109893 109984 . + 0 ID=Physo127038;Parent=Physo127038;rank=3 scaffold_1 . CDS 110059 111604 . + 0 ID=Physo127038;Parent=Physo127038;rank=4 scaffold_1 . repeat_region 113300 113331 . ? . description=trf scaffold_1 . exon 109893 109984 . + . ID=Physo127038.3;Parent=Physo127038;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . exon 110059 111604 . + . ID=Physo127038.4;Parent=Physo127038;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 ensembl protein_coding_gene 111767 113467 . - . ID=Physo127039;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10019;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 111767 113467 . - . ID=Physo127039;Parent=Physo127039;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 111767 113467 . - 0 ID=Physo127039;Parent=Physo127039;rank=1 scaffold_1 . exon 111767 113467 . - . ID=Physo127039.1;Parent=Physo127039;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 114085 114720 . + . ID=Physo127040;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10020;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 114085 114720 . + . ID=Physo127040;Parent=Physo127040;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 114085 114720 . + . ID=Physo127040.1;Parent=Physo127040;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 114097 114579 . + 0 ID=Physo127040;Parent=Physo127040;rank=1 scaffold_1 ensembl protein_coding_gene 115102 116729 . - . ID=Physo127041;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10021;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 115102 116729 . - . ID=Physo127041;Parent=Physo127041;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 115102 115434 . - 0 ID=Physo127041;Parent=Physo127041;rank=4 scaffold_1 . exon 115102 115434 . - . ID=Physo127041.4;Parent=Physo127041;constitutive=1;rank=4 scaffold_1 . CDS 115499 115859 . - 0 ID=Physo127041;Parent=Physo127041;rank=3 scaffold_1 . exon 115499 115859 . - . ID=Physo127041.3;Parent=Physo127041;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 115933 116099 . - 0 ID=Physo127041;Parent=Physo127041;rank=2 scaffold_1 . exon 115933 116099 . - . ID=Physo127041.2;Parent=Physo127041;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 116163 116729 . - 0 ID=Physo127041;Parent=Physo127041;rank=1 scaffold_1 . exon 116163 116729 . - . ID=Physo127041.1;Parent=Physo127041;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 119546 120547 . + . ID=Physo127042;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10022;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 119546 120547 . + . ID=Physo127042;Parent=Physo127042;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 119546 119592 . + 0 ID=Physo127042;Parent=Physo127042;rank=1 scaffold_1 . exon 119546 119592 . + . ID=Physo127042.1;Parent=Physo127042;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 119707 119958 . + 0 ID=Physo127042;Parent=Physo127042;rank=2 scaffold_1 . exon 119707 119958 . + . ID=Physo127042.2;Parent=Physo127042;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 120015 120155 . + 0 ID=Physo127042;Parent=Physo127042;rank=3 scaffold_1 . CDS 120214 120547 . + 0 ID=Physo127042;Parent=Physo127042;rank=4 scaffold_1 . repeat_region 121012 121021 . ? . description=dust scaffold_1 . repeat_region 124126 124135 . ? . description=dust scaffold_1 . biological_region 126697 126701 0.999 + . logic_name=eponine scaffold_1 . biological_region 126783 126790 0.999 - . logic_name=eponine scaffold_1 . repeat_region 127817 127827 . ? . description=dust scaffold_1 . biological_region 128188 128189 0.999 + . logic_name=eponine scaffold_1 . exon 120015 120155 . + . ID=Physo127042.3;Parent=Physo127042;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . exon 120214 120547 . + . ID=Physo127042.4;Parent=Physo127042;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 ensembl protein_coding_gene 123720 126062 . + . ID=Physo127043;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10023;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 123720 126062 . + . ID=Physo127043;Parent=Physo127043;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 123720 123764 . + 0 ID=Physo127043;Parent=Physo127043;rank=1 scaffold_1 . exon 123720 123764 . + . ID=Physo127043.1;Parent=Physo127043;constitutive=1;rank=1 scaffold_1 . CDS 123846 124044 . + 0 ID=Physo127043;Parent=Physo127043;rank=2 scaffold_1 . exon 123846 124044 . + . ID=Physo127043.2;Parent=Physo127043;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 124139 124206 . + 0 ID=Physo127043;Parent=Physo127043;rank=3 scaffold_1 . exon 124139 124206 . + . ID=Physo127043.3;Parent=Physo127043;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 124287 124349 . + 0 ID=Physo127043;Parent=Physo127043;rank=4 scaffold_1 . exon 124287 124349 . + . ID=Physo127043.4;Parent=Physo127043;constitutive=1;rank=4 scaffold_1 . CDS 124413 124496 . + 0 ID=Physo127043;Parent=Physo127043;rank=5 scaffold_1 . exon 124413 124496 . + . ID=Physo127043.5;Parent=Physo127043;constitutive=1;rank=5 scaffold_1 . CDS 124571 124750 . + 0 ID=Physo127043;Parent=Physo127043;rank=6 scaffold_1 . exon 124571 124750 . + . ID=Physo127043.6;Parent=Physo127043;constitutive=1;rank=6 scaffold_1 . CDS 124825 125067 . + 0 ID=Physo127043;Parent=Physo127043;rank=7 scaffold_1 . exon 124825 125067 . + . ID=Physo127043.7;Parent=Physo127043;constitutive=1;rank=7 scaffold_1 . CDS 125098 125254 . + 0 ID=Physo127043;Parent=Physo127043;rank=8 scaffold_1 . exon 125098 125254 . + . ID=Physo127043.8;Parent=Physo127043;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_1 . CDS 125320 125345 . + 0 ID=Physo127043;Parent=Physo127043;rank=9 scaffold_1 . exon 125320 125345 . + . ID=Physo127043.9;Parent=Physo127043;constitutive=1;ensembl_phase=1;rank=9 scaffold_1 . CDS 125415 126062 . + 0 ID=Physo127043;Parent=Physo127043;rank=10 scaffold_1 . exon 125415 126062 . + . ID=Physo127043.10;Parent=Physo127043;constitutive=1;rank=10 scaffold_1 . repeat_region 132926 133027 . ? . description=trf scaffold_1 ensembl protein_coding_gene 130271 131316 . - . ID=Physo108136;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10001;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 130271 131316 . - . ID=Physo108136;Parent=Physo108136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 130271 130526 . - . ID=Physo108136.3;Parent=Physo108136;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1 . CDS 130452 130526 . - 0 ID=Physo108136;Parent=Physo108136;rank=3 scaffold_1 . CDS 130609 131070 . - 0 ID=Physo108136;Parent=Physo108136;rank=2 scaffold_1 . exon 130609 131070 . - . ID=Physo108136.2;Parent=Physo108136;constitutive=1;rank=2 scaffold_1 . CDS 131149 131316 . - 0 ID=Physo108136;Parent=Physo108136;rank=1 scaffold_1 . exon 131149 131316 . - . ID=Physo108136.1;Parent=Physo108136;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 131460 133041 . + . ID=Physo127045;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10025;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 131460 133041 . + . ID=Physo127045;Parent=Physo127045;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 131460 131525 . + 0 ID=Physo127045;Parent=Physo127045;rank=1 scaffold_1 . exon 131460 131525 . + . ID=Physo127045.1;Parent=Physo127045;constitutive=1;rank=1 scaffold_1 . CDS 131599 132160 . + 0 ID=Physo127045;Parent=Physo127045;rank=2 scaffold_1 . exon 131599 132160 . + . ID=Physo127045.2;Parent=Physo127045;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 132262 132331 . + 0 ID=Physo127045;Parent=Physo127045;rank=3 scaffold_1 . exon 132262 132331 . + . ID=Physo127045.3;Parent=Physo127045;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 132566 132590 . + 0 ID=Physo127045;Parent=Physo127045;rank=4 scaffold_1 . exon 132566 132590 . + . ID=Physo127045.4;Parent=Physo127045;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 132653 132783 . + 0 ID=Physo127045;Parent=Physo127045;rank=5 scaffold_1 . exon 132653 132783 . + . ID=Physo127045.5;Parent=Physo127045;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 132816 133041 . + 0 ID=Physo127045;Parent=Physo127045;rank=6 scaffold_1 . exon 132816 133041 . + . ID=Physo127045.6;Parent=Physo127045;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 ensembl protein_coding_gene 135020 136162 . + . ID=Physo127046;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10026;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 135020 136162 . + . ID=Physo127046;Parent=Physo127046;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 135020 136162 . + 0 ID=Physo127046;Parent=Physo127046;rank=1 scaffold_1 . exon 135020 136162 . + . ID=Physo127046.1;Parent=Physo127046;constitutive=1;rank=1 scaffold_1 . repeat_region 141489 141498 . ? . description=dust scaffold_1 . repeat_region 143069 143079 . ? . description=dust scaffold_1 . biological_region 143609 143611 0.999 + . logic_name=eponine scaffold_1 . biological_region 144050 144052 0.999 + . logic_name=eponine scaffold_1 . biological_region 147570 147570 0.999 - . logic_name=eponine scaffold_1 . biological_region 147778 147780 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 141760 142514 . - . ID=Physo127047;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10027;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 141760 142514 . - . ID=Physo127047;Parent=Physo127047;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 141760 141837 . - 0 ID=Physo127047;Parent=Physo127047;rank=4 scaffold_1 . exon 141760 141837 . - . ID=Physo127047.4;Parent=Physo127047;constitutive=1;rank=4 scaffold_1 . CDS 141991 142007 . - 0 ID=Physo127047;Parent=Physo127047;rank=3 scaffold_1 . exon 141991 142007 . - . ID=Physo127047.3;Parent=Physo127047;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 142162 142384 . - 0 ID=Physo127047;Parent=Physo127047;rank=2 scaffold_1 . exon 142162 142384 . - . ID=Physo127047.2;Parent=Physo127047;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 142407 142514 . - 0 ID=Physo127047;Parent=Physo127047;rank=1 scaffold_1 . exon 142407 142514 . - . ID=Physo127047.1;Parent=Physo127047;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 143152 144789 . + . ID=Physo127048;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10028;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 143152 144789 . + . ID=Physo127048;Parent=Physo127048;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 143152 144789 . + 0 ID=Physo127048;Parent=Physo127048;rank=1 scaffold_1 . exon 143152 144789 . + . ID=Physo127048.1;Parent=Physo127048;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 147451 149452 . + . ID=Physo127049;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10029;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 147451 149452 . + . ID=Physo127049;Parent=Physo127049;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 147451 147810 . + 0 ID=Physo127049;Parent=Physo127049;rank=1 scaffold_1 . exon 147451 147810 . + . ID=Physo127049.1;Parent=Physo127049;constitutive=1;rank=1 scaffold_1 . CDS 147836 147946 . + 0 ID=Physo127049;Parent=Physo127049;rank=2 scaffold_1 . exon 147836 147946 . + . ID=Physo127049.2;Parent=Physo127049;constitutive=1;rank=2 scaffold_1 . CDS 147976 148949 . + 0 ID=Physo127049;Parent=Physo127049;rank=3 scaffold_1 . exon 147976 148949 . + . ID=Physo127049.3;Parent=Physo127049;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 149074 149452 . + 0 ID=Physo127049;Parent=Physo127049;rank=4 scaffold_1 . exon 149074 149452 . + . ID=Physo127049.4;Parent=Physo127049;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 ensembl protein_coding_gene 149673 151451 . - . ID=Physo127050;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10030;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 149673 151451 . - . ID=Physo127050;Parent=Physo127050;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 149673 151451 . - . ID=Physo127050.1;Parent=Physo127050;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 149811 151451 . - 0 ID=Physo127050;Parent=Physo127050;rank=1 scaffold_1 . repeat_region 157855 158127 . - . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 158403 159736 . - . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 159297 159335 . ? . description=trf scaffold_1 ensembl protein_coding_gene 156304 157838 . + . ID=Physo127051;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10031;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 156304 157838 . + . ID=Physo127051;Parent=Physo127051;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 156304 156820 . + 0 ID=Physo127051;Parent=Physo127051;rank=1 scaffold_1 . exon 156304 156820 . + . ID=Physo127051.1;Parent=Physo127051;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 157115 157182 . + 0 ID=Physo127051;Parent=Physo127051;rank=2 scaffold_1 . exon 157115 157182 . + . ID=Physo127051.2;Parent=Physo127051;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 157325 157356 . + 0 ID=Physo127051;Parent=Physo127051;rank=3 scaffold_1 . exon 157325 157356 . + . ID=Physo127051.3;Parent=Physo127051;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 157523 157838 . + 0 ID=Physo127051;Parent=Physo127051;rank=4 scaffold_1 . exon 157523 157838 . + . ID=Physo127051.4;Parent=Physo127051;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 ensembl protein_coding_gene 158091 159992 . - . ID=Physo127052;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10032;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 158091 159992 . - . ID=Physo127052;Parent=Physo127052;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 158091 158097 . - 0 ID=Physo127052;Parent=Physo127052;rank=5 scaffold_1 . exon 158091 158097 . - . ID=Physo127052.5;Parent=Physo127052;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 158138 158871 . - 0 ID=Physo127052;Parent=Physo127052;rank=4 scaffold_1 . exon 158138 158871 . - . ID=Physo127052.4;Parent=Physo127052;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 158991 159641 . - 0 ID=Physo127052;Parent=Physo127052;rank=3 scaffold_1 . exon 158991 159641 . - . ID=Physo127052.3;Parent=Physo127052;constitutive=1;rank=3 scaffold_1 . CDS 159686 159728 . - 0 ID=Physo127052;Parent=Physo127052;rank=2 scaffold_1 . exon 159686 159728 . - . ID=Physo127052.2;Parent=Physo127052;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 159949 159992 . - 0 ID=Physo127052;Parent=Physo127052;rank=1 scaffold_1 . repeat_region 160325 160374 . ? . description=dust scaffold_1 . repeat_region 162664 162671 . ? . description=dust scaffold_1 . repeat_region 165003 165013 . ? . description=dust scaffold_1 . repeat_region 165420 165666 . + . description=Sola3-2_PS scaffold_1 . repeat_region 165930 166172 . + . description=Sola3-2_PS scaffold_1 . repeat_region 166112 166120 . ? . description=dust scaffold_1 . repeat_region 167493 167501 . ? . description=dust scaffold_1 . repeat_region 169497 169509 . ? . description=dust scaffold_1 . exon 159949 159992 . - . ID=Physo127052.1;Parent=Physo127052;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . biological_region 179372 179375 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 171173 171824 . + . ID=Physo127053;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10033;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 171173 171824 . + . ID=Physo127053;Parent=Physo127053;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 171173 171335 . + 0 ID=Physo127053;Parent=Physo127053;rank=1 scaffold_1 . exon 171173 171335 . + . ID=Physo127053.1;Parent=Physo127053;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 171412 171824 . + 0 ID=Physo127053;Parent=Physo127053;rank=2 scaffold_1 . exon 171412 171824 . + . ID=Physo127053.2;Parent=Physo127053;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . repeat_region 184212 184259 . ? . description=trf scaffold_1 . repeat_region 184717 184742 . ? . description=dust scaffold_1 ensembl protein_coding_gene 180487 180806 . - . ID=Physo110141;biotype=protein_coding;external_name=estExt_Genewise1.C_10379;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 180487 180806 . - . ID=Physo110141;Parent=Physo110141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 180487 180806 . - . ID=Physo110141.1;Parent=Physo110141;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 180501 180806 . - 0 ID=Physo110141;Parent=Physo110141;rank=1 scaffold_1 ensembl protein_coding_gene 188936 189649 . + . ID=Physo127054;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10034;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 188936 189649 . + . ID=Physo127054;Parent=Physo127054;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 188936 189649 . + 0 ID=Physo127054;Parent=Physo127054;rank=1 scaffold_1 . exon 188936 189649 . + . ID=Physo127054.1;Parent=Physo127054;constitutive=1;rank=1 scaffold_1 . biological_region 191620 191623 0.999 - . logic_name=eponine scaffold_1 . biological_region 194556 194559 0.999 - . logic_name=eponine scaffold_1 . biological_region 194568 194570 0.999 - . logic_name=eponine scaffold_1 . biological_region 194609 194614 0.999 + . logic_name=eponine scaffold_1 . biological_region 194621 194622 0.999 - . logic_name=eponine scaffold_1 . biological_region 194708 194713 0.999 - . logic_name=eponine scaffold_1 . biological_region 194764 194769 0.999 + . logic_name=eponine scaffold_1 . biological_region 196747 196747 0.999 + . logic_name=eponine scaffold_1 . biological_region 196876 196879 0.999 - . logic_name=eponine scaffold_1 . biological_region 197361 197364 0.999 + . logic_name=eponine scaffold_1 . biological_region 197383 197386 0.999 - . logic_name=eponine scaffold_1 . biological_region 197436 197443 0.999 + . logic_name=eponine scaffold_1 . biological_region 197439 197444 0.999 - . logic_name=eponine scaffold_1 . biological_region 197459 197461 0.999 - . logic_name=eponine scaffold_1 . biological_region 197483 197486 0.999 - . logic_name=eponine scaffold_1 . biological_region 197511 197519 0.999 + . logic_name=eponine scaffold_1 . biological_region 197533 197538 0.999 - . logic_name=eponine scaffold_1 . biological_region 197564 197570 0.999 - . logic_name=eponine scaffold_1 . biological_region 197626 197628 0.999 - . logic_name=eponine scaffold_1 . biological_region 197992 197992 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 190088 191646 . - . ID=Physo127055;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10035;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 190088 191646 . - . ID=Physo127055;Parent=Physo127055;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 190088 190181 . - 0 ID=Physo127055;Parent=Physo127055;rank=6 scaffold_1 . exon 190088 190181 . - . ID=Physo127055.6;Parent=Physo127055;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 190266 190447 . - 0 ID=Physo127055;Parent=Physo127055;rank=5 scaffold_1 . exon 190266 190447 . - . ID=Physo127055.5;Parent=Physo127055;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 190509 190685 . - 0 ID=Physo127055;Parent=Physo127055;rank=4 scaffold_1 . exon 190509 190685 . - . ID=Physo127055.4;Parent=Physo127055;constitutive=1;rank=4 scaffold_1 . CDS 190763 190833 . - 0 ID=Physo127055;Parent=Physo127055;rank=3 scaffold_1 . exon 190763 190833 . - . ID=Physo127055.3;Parent=Physo127055;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 190886 191426 . - 0 ID=Physo127055;Parent=Physo127055;rank=2 scaffold_1 . exon 190886 191426 . - . ID=Physo127055.2;Parent=Physo127055;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 191488 191646 . - 0 ID=Physo127055;Parent=Physo127055;rank=1 scaffold_1 . exon 191488 191646 . - . ID=Physo127055.1;Parent=Physo127055;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 196400 196993 . - . ID=Physo127057;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10037;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 196400 196993 . - . ID=Physo127057;Parent=Physo127057;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 196400 196867 . - 0 ID=Physo127057;Parent=Physo127057;rank=2 scaffold_1 . exon 196400 196867 . - . ID=Physo127057.2;Parent=Physo127057;constitutive=1;rank=2 scaffold_1 . CDS 196934 196993 . - 0 ID=Physo127057;Parent=Physo127057;rank=1 scaffold_1 . exon 196934 196993 . - . ID=Physo127057.1;Parent=Physo127057;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 197144 198020 . + . ID=Physo127058;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10038;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 197144 198020 . + . ID=Physo127058;Parent=Physo127058;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 197144 197790 . + . ID=Physo127058.1;Parent=Physo127058;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 197187 197790 . + 0 ID=Physo127058;Parent=Physo127058;rank=1 scaffold_1 . CDS 197857 198020 . + 0 ID=Physo127058;Parent=Physo127058;rank=2 scaffold_1 . exon 197857 198020 . + . ID=Physo127058.2;Parent=Physo127058;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 192407 194203 . + . ID=Physo155207;biotype=protein_coding;external_name=C_scaffold_1000011;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 192407 194203 . + . ID=Physo155207;Parent=Physo155207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 192407 194203 . + 0 ID=Physo155207;Parent=Physo155207;rank=1 scaffold_1 . exon 192407 194203 . + . ID=Physo155207.1;Parent=Physo155207;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 194539 196230 . + . ID=Physo155208;biotype=protein_coding;external_name=C_scaffold_1000012;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 194539 196230 . + . ID=Physo155208;Parent=Physo155208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 194539 196230 . + 0 ID=Physo155208;Parent=Physo155208;rank=1 scaffold_1 . exon 194539 196230 . + . ID=Physo155208.1;Parent=Physo155208;constitutive=1;rank=1 scaffold_1 . repeat_region 209686 209973 . ? . description=dust scaffold_1 ensembl protein_coding_gene 200272 201187 . - . ID=Physo127059;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10039;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 200272 201187 . - . ID=Physo127059;Parent=Physo127059;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 200272 200558 . - . ID=Physo127059.3;Parent=Physo127059;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1 . CDS 200454 200558 . - 0 ID=Physo127059;Parent=Physo127059;rank=3 scaffold_1 . CDS 200649 200880 . - 0 ID=Physo127059;Parent=Physo127059;rank=2 scaffold_1 . exon 200649 200880 . - . ID=Physo127059.2;Parent=Physo127059;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 200952 201187 . - 0 ID=Physo127059;Parent=Physo127059;rank=1 scaffold_1 . exon 200952 201187 . - . ID=Physo127059.1;Parent=Physo127059;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 202468 203535 . + . ID=Physo127060;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10040;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 202468 203535 . + . ID=Physo127060;Parent=Physo127060;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 202468 203535 . + 0 ID=Physo127060;Parent=Physo127060;rank=1 scaffold_1 . exon 202468 203535 . + . ID=Physo127060.1;Parent=Physo127060;constitutive=1;rank=1 scaffold_1 . repeat_region 216781 216814 . ? . description=trf scaffold_1 . biological_region 217848 217850 0.999 - . logic_name=eponine scaffold_1 . repeat_region 218157 218182 . ? . description=trf scaffold_1 . biological_region 218397 218401 0.999 + . logic_name=eponine scaffold_1 . biological_region 218409 218411 0.999 - . logic_name=eponine scaffold_1 . biological_region 218430 218430 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 216879 217928 . + . ID=Physo108137;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10002;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 216879 217928 . + . ID=Physo108137;Parent=Physo108137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 216879 217520 . + 0 ID=Physo108137;Parent=Physo108137;rank=1 scaffold_1 . exon 216879 217520 . + . ID=Physo108137.1;Parent=Physo108137;constitutive=1;rank=1 scaffold_1 . CDS 217556 217647 . + 0 ID=Physo108137;Parent=Physo108137;rank=2 scaffold_1 . exon 217556 217647 . + . ID=Physo108137.2;Parent=Physo108137;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 217682 217928 . + 0 ID=Physo108137;Parent=Physo108137;rank=3 scaffold_1 . exon 217682 217928 . + . ID=Physo108137.3;Parent=Physo108137;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 ensembl protein_coding_gene 214456 215471 . - . ID=Physo127061;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10041;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 214456 215471 . - . ID=Physo127061;Parent=Physo127061;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 214456 214931 . - 0 ID=Physo127061;Parent=Physo127061;rank=4 scaffold_1 . exon 214456 214931 . - . ID=Physo127061.4;Parent=Physo127061;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 215075 215093 . - 0 ID=Physo127061;Parent=Physo127061;rank=3 scaffold_1 . exon 215075 215093 . - . ID=Physo127061.3;Parent=Physo127061;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 215238 215329 . - 0 ID=Physo127061;Parent=Physo127061;rank=2 scaffold_1 . exon 215238 215329 . - . ID=Physo127061.2;Parent=Physo127061;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 215423 215471 . - 0 ID=Physo127061;Parent=Physo127061;rank=1 scaffold_1 . exon 215423 215471 . - . ID=Physo127061.1;Parent=Physo127061;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 218048 222022 . + . ID=Physo127063;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10043;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 218048 222022 . + . ID=Physo127063;Parent=Physo127063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 218048 222022 . + 0 ID=Physo127063;Parent=Physo127063;rank=1 scaffold_1 . exon 218048 222022 . + . ID=Physo127063.1;Parent=Physo127063;constitutive=1;rank=1 scaffold_1 . repeat_region 221939 221946 . ? . description=dust scaffold_1 . repeat_region 227434 227488 . ? . description=dust scaffold_1 ensembl protein_coding_gene 226478 227683 . - . ID=Physo127065;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10045;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 226478 227683 . - . ID=Physo127065;Parent=Physo127065;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 226478 226591 . - 0 ID=Physo127065;Parent=Physo127065;rank=2 scaffold_1 . exon 226478 226591 . - . ID=Physo127065.2;Parent=Physo127065;constitutive=1;rank=2 scaffold_1 . CDS 226682 227683 . - 0 ID=Physo127065;Parent=Physo127065;rank=1 scaffold_1 . exon 226682 227683 . - . ID=Physo127065.1;Parent=Physo127065;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 228415 230213 . + . ID=Physo127066;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10046;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 228415 230213 . + . ID=Physo127066;Parent=Physo127066;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 228415 228437 . + 0 ID=Physo127066;Parent=Physo127066;rank=1 scaffold_1 . exon 228415 228437 . + . ID=Physo127066.1;Parent=Physo127066;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 228468 228628 . + 0 ID=Physo127066;Parent=Physo127066;rank=2 scaffold_1 . exon 228468 228628 . + . ID=Physo127066.2;Parent=Physo127066;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 228707 228812 . + 0 ID=Physo127066;Parent=Physo127066;rank=3 scaffold_1 . exon 228707 228812 . + . ID=Physo127066.3;Parent=Physo127066;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 228876 229191 . + 0 ID=Physo127066;Parent=Physo127066;rank=4 scaffold_1 . exon 228876 229191 . + . ID=Physo127066.4;Parent=Physo127066;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 229266 229409 . + 0 ID=Physo127066;Parent=Physo127066;rank=5 scaffold_1 . exon 229266 229409 . + . ID=Physo127066.5;Parent=Physo127066;constitutive=1;rank=5 scaffold_1 . CDS 229483 229549 . + 0 ID=Physo127066;Parent=Physo127066;rank=6 scaffold_1 . exon 229483 229549 . + . ID=Physo127066.6;Parent=Physo127066;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_1 . CDS 229624 229693 . + 0 ID=Physo127066;Parent=Physo127066;rank=7 scaffold_1 . exon 229624 229693 . + . ID=Physo127066.7;Parent=Physo127066;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_1 . CDS 229772 229864 . + 0 ID=Physo127066;Parent=Physo127066;rank=8 scaffold_1 . CDS 229936 229997 . + 0 ID=Physo127066;Parent=Physo127066;rank=9 scaffold_1 . CDS 230068 230213 . + 0 ID=Physo127066;Parent=Physo127066;rank=10 scaffold_1 ensembl protein_coding_gene 222120 223267 . - . ID=Physo155215;biotype=protein_coding;external_name=C_scaffold_1000019;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 222120 223267 . - . ID=Physo155215;Parent=Physo155215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 222120 222710 . - 0 ID=Physo155215;Parent=Physo155215;rank=3 scaffold_1 . exon 222120 222710 . - . ID=Physo155215.3;Parent=Physo155215;constitutive=1;rank=3 scaffold_1 . CDS 222771 222902 . - 0 ID=Physo155215;Parent=Physo155215;rank=2 scaffold_1 . exon 222771 222902 . - . ID=Physo155215.2;Parent=Physo155215;constitutive=1;rank=2 scaffold_1 . CDS 223172 223267 . - 0 ID=Physo155215;Parent=Physo155215;rank=1 scaffold_1 . exon 223172 223267 . - . ID=Physo155215.1;Parent=Physo155215;constitutive=1;rank=1 scaffold_1 . repeat_region 230780 230815 . ? . description=trf scaffold_1 . repeat_region 230798 230827 . ? . description=trf scaffold_1 . biological_region 230975 230976 0.999 - . logic_name=eponine scaffold_1 . biological_region 235875 235879 0.999 - . logic_name=eponine scaffold_1 . biological_region 235962 235966 0.999 + . logic_name=eponine scaffold_1 . biological_region 235974 235976 0.999 - . logic_name=eponine scaffold_1 . biological_region 236025 236038 0.999 + . logic_name=eponine scaffold_1 . biological_region 236063 236068 0.999 - . logic_name=eponine scaffold_1 . biological_region 236077 236082 0.999 - . logic_name=eponine scaffold_1 . biological_region 236088 236090 0.999 - . logic_name=eponine scaffold_1 . biological_region 236108 236113 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 236350 237490 . - . ID=Physo110151;biotype=protein_coding;external_name=estExt_Genewise1.C_10389;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 236350 237490 . - . ID=Physo110151;Parent=Physo110151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 236350 236485 . - . ID=Physo110151.6;Parent=Physo110151;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=6 scaffold_1 . CDS 236359 236485 . - 0 ID=Physo110151;Parent=Physo110151;rank=6 scaffold_1 . CDS 236616 236764 . - 0 ID=Physo110151;Parent=Physo110151;rank=5 scaffold_1 . exon 236616 236764 . - . ID=Physo110151.5;Parent=Physo110151;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 236855 236974 . - 0 ID=Physo110151;Parent=Physo110151;rank=4 scaffold_1 . exon 236855 236974 . - . ID=Physo110151.4;Parent=Physo110151;constitutive=1;rank=4 scaffold_1 . CDS 237060 237102 . - 0 ID=Physo110151;Parent=Physo110151;rank=3 scaffold_1 . exon 237060 237102 . - . ID=Physo110151.3;Parent=Physo110151;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 237184 237274 . - 0 ID=Physo110151;Parent=Physo110151;rank=2 scaffold_1 . exon 237184 237274 . - . ID=Physo110151.2;Parent=Physo110151;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 237364 237490 . - 0 ID=Physo110151;Parent=Physo110151;rank=1 scaffold_1 . exon 237364 237490 . - . ID=Physo110151.1;Parent=Physo110151;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . exon 229772 229864 . + . ID=Physo127066.8;Parent=Physo127066;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_1 . exon 229936 229997 . + . ID=Physo127066.9;Parent=Physo127066;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_1 . exon 230068 230213 . + . ID=Physo127066.10;Parent=Physo127066;constitutive=1;ensembl_phase=1;rank=10 scaffold_1 ensembl protein_coding_gene 231416 236176 . - . ID=Physo127068;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10048;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 231416 236176 . - . ID=Physo127068;Parent=Physo127068;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 231416 236176 . - . ID=Physo127068.1;Parent=Physo127068;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 231467 236176 . - 0 ID=Physo127068;Parent=Physo127068;rank=1 scaffold_1 ensembl protein_coding_gene 237674 238643 . - . ID=Physo127070;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10050;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 237674 238643 . - . ID=Physo127070;Parent=Physo127070;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 237674 238004 . - 0 ID=Physo127070;Parent=Physo127070;rank=3 scaffold_1 . exon 237674 238004 . - . ID=Physo127070.3;Parent=Physo127070;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 238070 238234 . - 0 ID=Physo127070;Parent=Physo127070;rank=2 scaffold_1 . exon 238070 238234 . - . ID=Physo127070.2;Parent=Physo127070;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 238303 238643 . - 0 ID=Physo127070;Parent=Physo127070;rank=1 scaffold_1 . exon 238303 238643 . - . ID=Physo127070.1;Parent=Physo127070;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 230669 231349 . + . ID=Physo155217;biotype=protein_coding;external_name=C_scaffold_1000021;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 230669 231349 . + . ID=Physo155217;Parent=Physo155217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 230669 231349 . + 0 ID=Physo155217;Parent=Physo155217;rank=1 scaffold_1 . exon 230669 231349 . + . ID=Physo155217.1;Parent=Physo155217;constitutive=1;rank=1 scaffold_1 . repeat_region 242335 242535 . + . description=Polinton-1_PI scaffold_1 . repeat_region 246287 246294 . ? . description=dust scaffold_1 ensembl protein_coding_gene 240155 242167 . + . ID=Physo127071;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10051;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 240155 242167 . + . ID=Physo127071;Parent=Physo127071;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 240155 242167 . + 0 ID=Physo127071;Parent=Physo127071;rank=1 scaffold_1 . exon 240155 242167 . + . ID=Physo127071.1;Parent=Physo127071;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 247458 248431 . + . ID=Physo127073;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10053;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 247458 248431 . + . ID=Physo127073;Parent=Physo127073;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 247458 247798 . + 0 ID=Physo127073;Parent=Physo127073;rank=1 scaffold_1 . exon 247458 247798 . + . ID=Physo127073.1;Parent=Physo127073;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 247871 248032 . + 0 ID=Physo127073;Parent=Physo127073;rank=2 scaffold_1 . exon 247871 248032 . + . ID=Physo127073.2;Parent=Physo127073;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 248102 248202 . + 0 ID=Physo127073;Parent=Physo127073;rank=3 scaffold_1 . exon 248102 248202 . + . ID=Physo127073.3;Parent=Physo127073;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 248238 248431 . + 0 ID=Physo127073;Parent=Physo127073;rank=4 scaffold_1 . exon 248238 248431 . + . ID=Physo127073.4;Parent=Physo127073;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 248544 251457 . + . ID=Physo127074;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10054;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 248544 251457 . + . ID=Physo127074;Parent=Physo127074;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 248544 249848 . + 0 ID=Physo127074;Parent=Physo127074;rank=1 scaffold_1 . exon 248544 249848 . + . ID=Physo127074.1;Parent=Physo127074;constitutive=1;rank=1 scaffold_1 . CDS 249939 250175 . + 0 ID=Physo127074;Parent=Physo127074;rank=2 scaffold_1 . CDS 250443 250889 . + 0 ID=Physo127074;Parent=Physo127074;rank=3 scaffold_1 . CDS 250974 251363 . + 0 ID=Physo127074;Parent=Physo127074;rank=4 scaffold_1 ensembl protein_coding_gene 245024 246400 . + . ID=Physo155219;biotype=protein_coding;external_name=C_scaffold_1000023;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 245024 246400 . + . ID=Physo155219;Parent=Physo155219;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 245024 245084 . + 0 ID=Physo155219;Parent=Physo155219;rank=1 scaffold_1 . exon 245024 245084 . + . ID=Physo155219.1;Parent=Physo155219;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 245183 245204 . + 0 ID=Physo155219;Parent=Physo155219;rank=2 scaffold_1 . exon 245183 245204 . + . ID=Physo155219.2;Parent=Physo155219;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 245306 245342 . + 0 ID=Physo155219;Parent=Physo155219;rank=3 scaffold_1 . exon 245306 245342 . + . ID=Physo155219.3;Parent=Physo155219;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 245437 245460 . + 0 ID=Physo155219;Parent=Physo155219;rank=4 scaffold_1 . exon 245437 245460 . + . ID=Physo155219.4;Parent=Physo155219;constitutive=1;rank=4 scaffold_1 . CDS 245535 245612 . + 0 ID=Physo155219;Parent=Physo155219;rank=5 scaffold_1 . exon 245535 245612 . + . ID=Physo155219.5;Parent=Physo155219;constitutive=1;rank=5 scaffold_1 . CDS 245681 246026 . + 0 ID=Physo155219;Parent=Physo155219;rank=6 scaffold_1 . exon 245681 246026 . + . ID=Physo155219.6;Parent=Physo155219;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_1 . CDS 246095 246271 . + 0 ID=Physo155219;Parent=Physo155219;rank=7 scaffold_1 . exon 246095 246271 . + . ID=Physo155219.7;Parent=Physo155219;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 246357 246400 . + 0 ID=Physo155219;Parent=Physo155219;rank=8 scaffold_1 . exon 246357 246400 . + . ID=Physo155219.8;Parent=Physo155219;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 ensembl protein_coding_gene 246821 247122 . + . ID=Physo155220;biotype=protein_coding;external_name=C_scaffold_1000024;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 246821 247122 . + . ID=Physo155220;Parent=Physo155220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 246821 246924 . + 0 ID=Physo155220;Parent=Physo155220;rank=1 scaffold_1 . exon 246821 246924 . + . ID=Physo155220.1;Parent=Physo155220;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 246963 247122 . + 0 ID=Physo155220;Parent=Physo155220;rank=2 scaffold_1 . exon 246963 247122 . + . ID=Physo155220.2;Parent=Physo155220;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . biological_region 250414 250419 0.999 - . logic_name=eponine scaffold_1 . biological_region 251540 251545 0.999 + . logic_name=eponine scaffold_1 . biological_region 251563 251569 0.999 + . logic_name=eponine scaffold_1 . biological_region 251724 251727 0.999 - . logic_name=eponine scaffold_1 . biological_region 251778 251786 0.999 + . logic_name=eponine scaffold_1 . biological_region 251873 251878 0.999 - . logic_name=eponine scaffold_1 . biological_region 251891 251900 0.999 - . logic_name=eponine scaffold_1 . biological_region 251926 251930 0.999 - . logic_name=eponine scaffold_1 . biological_region 251948 251949 0.999 - . logic_name=eponine scaffold_1 . biological_region 251949 251953 0.999 + . logic_name=eponine scaffold_1 . biological_region 252771 252772 0.999 - . logic_name=eponine scaffold_1 . biological_region 253007 253008 0.999 + . logic_name=eponine scaffold_1 . biological_region 255145 255145 0.999 - . logic_name=eponine scaffold_1 . biological_region 255280 255284 0.999 - . logic_name=eponine scaffold_1 . biological_region 255323 255324 0.999 - . logic_name=eponine scaffold_1 . biological_region 255335 255342 0.999 + . logic_name=eponine scaffold_1 . biological_region 255358 255360 0.999 - . logic_name=eponine scaffold_1 . biological_region 255381 255383 0.999 - . logic_name=eponine scaffold_1 . biological_region 255389 255398 0.999 - . logic_name=eponine scaffold_1 . biological_region 255446 255451 0.999 - . logic_name=eponine scaffold_1 . biological_region 255466 255469 0.999 - . logic_name=eponine scaffold_1 . biological_region 255474 255475 0.999 + . logic_name=eponine scaffold_1 . biological_region 255538 255539 0.999 + . logic_name=eponine scaffold_1 . biological_region 255546 255551 0.999 - . logic_name=eponine scaffold_1 . biological_region 255590 255591 0.999 + . logic_name=eponine scaffold_1 . biological_region 255630 255645 0.999 + . logic_name=eponine scaffold_1 . biological_region 255634 255642 0.999 - . logic_name=eponine scaffold_1 . biological_region 255662 255673 0.999 - . logic_name=eponine scaffold_1 . biological_region 255683 255693 0.999 - . logic_name=eponine scaffold_1 . biological_region 255691 255695 0.999 + . logic_name=eponine scaffold_1 . biological_region 255711 255720 0.999 - . logic_name=eponine scaffold_1 . biological_region 255725 255728 0.999 - . logic_name=eponine scaffold_1 . biological_region 255741 255749 0.999 - . logic_name=eponine scaffold_1 . biological_region 255764 255769 0.999 - . logic_name=eponine scaffold_1 . repeat_region 258987 259071 . ? . description=trf scaffold_1 . exon 249939 250175 . + . ID=Physo127074.2;Parent=Physo127074;constitutive=1;rank=2 scaffold_1 . exon 250443 250889 . + . ID=Physo127074.3;Parent=Physo127074;constitutive=1;rank=3 scaffold_1 . exon 250974 251457 . + . ID=Physo127074.4;Parent=Physo127074;constitutive=1;ensembl_end_phase=-1;rank=4 scaffold_1 ensembl protein_coding_gene 251558 252784 . + . ID=Physo127075;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10055;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 251558 252784 . + . ID=Physo127075;Parent=Physo127075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 251558 252784 . + 0 ID=Physo127075;Parent=Physo127075;rank=1 scaffold_1 . exon 251558 252784 . + . ID=Physo127075.1;Parent=Physo127075;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 252979 255774 . - . ID=Physo127076;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10056;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 252979 255774 . - . ID=Physo127076;Parent=Physo127076;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 252979 254556 . - 0 ID=Physo127076;Parent=Physo127076;rank=2 scaffold_1 . exon 252979 254556 . - . ID=Physo127076.2;Parent=Physo127076;constitutive=1;rank=2 scaffold_1 . CDS 254626 255774 . - 0 ID=Physo127076;Parent=Physo127076;rank=1 scaffold_1 . exon 254626 255774 . - . ID=Physo127076.1;Parent=Physo127076;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 255935 257842 . + . ID=Physo127077;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10057;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 255935 257842 . + . ID=Physo127077;Parent=Physo127077;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 255935 257842 . + 0 ID=Physo127077;Parent=Physo127077;rank=1 scaffold_1 . exon 255935 257842 . + . ID=Physo127077.1;Parent=Physo127077;constitutive=1;rank=1 scaffold_1 . repeat_region 262413 262420 . ? . description=dust scaffold_1 . repeat_region 263894 263907 . ? . description=dust scaffold_1 . repeat_region 264870 264879 . ? . description=dust scaffold_1 ensembl protein_coding_gene 263336 267820 . + . ID=Physo127078;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10058;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 263336 267820 . + . ID=Physo127078;Parent=Physo127078;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 263336 263886 . + 0 ID=Physo127078;Parent=Physo127078;rank=1 scaffold_1 . exon 263336 263886 . + . ID=Physo127078.1;Parent=Physo127078;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 263982 264038 . + 0 ID=Physo127078;Parent=Physo127078;rank=2 scaffold_1 . exon 263982 264038 . + . ID=Physo127078.2;Parent=Physo127078;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 264119 264538 . + 0 ID=Physo127078;Parent=Physo127078;rank=3 scaffold_1 . exon 264119 264538 . + . ID=Physo127078.3;Parent=Physo127078;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 264624 264815 . + 0 ID=Physo127078;Parent=Physo127078;rank=4 scaffold_1 . exon 264624 264815 . + . ID=Physo127078.4;Parent=Physo127078;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=4 scaffold_1 . CDS 264891 267358 . + 0 ID=Physo127078;Parent=Physo127078;rank=5 scaffold_1 . exon 264891 267358 . + . ID=Physo127078.5;Parent=Physo127078;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 267404 267666 . + 0 ID=Physo127078;Parent=Physo127078;rank=6 scaffold_1 . exon 267404 267666 . + . ID=Physo127078.6;Parent=Physo127078;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 267746 267820 . + 0 ID=Physo127078;Parent=Physo127078;rank=7 scaffold_1 . exon 267746 267820 . + . ID=Physo127078.7;Parent=Physo127078;constitutive=1;rank=7 scaffold_1 ensembl protein_coding_gene 267906 272063 . - . ID=Physo155230;biotype=protein_coding;external_name=C_scaffold_1000034;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 267906 272063 . - . ID=Physo155230;Parent=Physo155230;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 267906 268081 . - 0 ID=Physo155230;Parent=Physo155230;rank=7 scaffold_1 . exon 267906 268081 . - . ID=Physo155230.7;Parent=Physo155230;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 268136 269821 . - 0 ID=Physo155230;Parent=Physo155230;rank=6 scaffold_1 . exon 268136 269821 . - . ID=Physo155230.6;Parent=Physo155230;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 269873 269924 . - 0 ID=Physo155230;Parent=Physo155230;rank=5 scaffold_1 . CDS 269994 270163 . - 0 ID=Physo155230;Parent=Physo155230;rank=4 scaffold_1 . CDS 270335 270488 . - 0 ID=Physo155230;Parent=Physo155230;rank=3 scaffold_1 . CDS 270528 271787 . - 0 ID=Physo155230;Parent=Physo155230;rank=2 scaffold_1 . CDS 271824 272063 . - 0 ID=Physo155230;Parent=Physo155230;rank=1 scaffold_1 . biological_region 271888 271893 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 273094 273495 . + . ID=Physo127080;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10060;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 273094 273495 . + . ID=Physo127080;Parent=Physo127080;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 273094 273495 . + 0 ID=Physo127080;Parent=Physo127080;rank=1 scaffold_1 . exon 273094 273495 . + . ID=Physo127080.1;Parent=Physo127080;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 277353 277781 . - . ID=Physo127081;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10061;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 277353 277781 . - . ID=Physo127081;Parent=Physo127081;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 277353 277781 . - 0 ID=Physo127081;Parent=Physo127081;rank=1 scaffold_1 . exon 277353 277781 . - . ID=Physo127081.1;Parent=Physo127081;constitutive=1;rank=1 scaffold_1 . exon 269873 269924 . - . ID=Physo155230.5;Parent=Physo155230;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . exon 269994 270163 . - . ID=Physo155230.4;Parent=Physo155230;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . exon 270335 270488 . - . ID=Physo155230.3;Parent=Physo155230;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . exon 270528 271787 . - . ID=Physo155230.2;Parent=Physo155230;constitutive=1;rank=2 scaffold_1 . exon 271824 272063 . - . ID=Physo155230.1;Parent=Physo155230;constitutive=1;rank=1 scaffold_1 . repeat_region 283594 283872 . - . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 284055 286408 . - . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 288259 288407 . - . description=GypsyPi-1c_I-int scaffold_1 ensembl protein_coding_gene 281663 282287 . - . ID=Physo127082;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10062;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 281663 282287 . - . ID=Physo127082;Parent=Physo127082;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 281663 281871 . - 0 ID=Physo127082;Parent=Physo127082;rank=3 scaffold_1 . exon 281663 281871 . - . ID=Physo127082.3;Parent=Physo127082;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 281913 281992 . - 0 ID=Physo127082;Parent=Physo127082;rank=2 scaffold_1 . exon 281913 281992 . - . ID=Physo127082.2;Parent=Physo127082;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 282058 282287 . - 0 ID=Physo127082;Parent=Physo127082;rank=1 scaffold_1 . exon 282058 282287 . - . ID=Physo127082.1;Parent=Physo127082;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 283830 287605 . - . ID=Physo127083;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10063;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 283830 287605 . - . ID=Physo127083;Parent=Physo127083;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 283830 283836 . - 0 ID=Physo127083;Parent=Physo127083;rank=5 scaffold_1 . exon 283830 283836 . - . ID=Physo127083.5;Parent=Physo127083;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 283877 284034 . - 0 ID=Physo127083;Parent=Physo127083;rank=4 scaffold_1 . exon 283877 284034 . - . ID=Physo127083.4;Parent=Physo127083;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 284118 284558 . - 0 ID=Physo127083;Parent=Physo127083;rank=3 scaffold_1 . exon 284118 284558 . - . ID=Physo127083.3;Parent=Physo127083;constitutive=1;rank=3 scaffold_1 . CDS 284635 285937 . - 0 ID=Physo127083;Parent=Physo127083;rank=2 scaffold_1 . exon 284635 285937 . - . ID=Physo127083.2;Parent=Physo127083;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 285957 287605 . - 0 ID=Physo127083;Parent=Physo127083;rank=1 scaffold_1 . exon 285957 287605 . - . ID=Physo127083.1;Parent=Physo127083;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . biological_region 289810 289815 0.999 - . logic_name=eponine scaffold_1 . biological_region 290584 290586 0.999 + . logic_name=eponine scaffold_1 . repeat_region 291285 291322 . ? . description=dust scaffold_1 . repeat_region 291380 291426 . ? . description=trf scaffold_1 . biological_region 292495 292498 0.999 + . logic_name=eponine scaffold_1 . repeat_region 292717 292754 . ? . description=trf scaffold_1 . biological_region 293431 293435 0.999 + . logic_name=eponine scaffold_1 . repeat_region 293542 293550 . ? . description=dust scaffold_1 . biological_region 293565 293565 0.999 - . logic_name=eponine scaffold_1 . biological_region 293953 293954 0.999 - . logic_name=eponine scaffold_1 . biological_region 293970 293977 0.999 - . logic_name=eponine scaffold_1 . repeat_region 294106 294151 . ? . description=trf scaffold_1 . repeat_region 294949 294966 . ? . description=dust scaffold_1 . biological_region 297265 297267 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 290118 290690 . - . ID=Physo127084;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10064;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 290118 290690 . - . ID=Physo127084;Parent=Physo127084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 290118 290177 . - 0 ID=Physo127084;Parent=Physo127084;rank=3 scaffold_1 . exon 290118 290177 . - . ID=Physo127084.3;Parent=Physo127084;constitutive=1;rank=3 scaffold_1 . CDS 290337 290477 . - 0 ID=Physo127084;Parent=Physo127084;rank=2 scaffold_1 . exon 290337 290477 . - . ID=Physo127084.2;Parent=Physo127084;constitutive=1;rank=2 scaffold_1 . CDS 290520 290690 . - 0 ID=Physo127084;Parent=Physo127084;rank=1 scaffold_1 . exon 290520 290690 . - . ID=Physo127084.1;Parent=Physo127084;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 291416 292341 . - . ID=Physo127085;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10065;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 291416 292341 . - . ID=Physo127085;Parent=Physo127085;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 291416 291610 . - 0 ID=Physo127085;Parent=Physo127085;rank=4 scaffold_1 . exon 291416 291610 . - . ID=Physo127085.4;Parent=Physo127085;constitutive=1;rank=4 scaffold_1 . CDS 291745 291788 . - 0 ID=Physo127085;Parent=Physo127085;rank=3 scaffold_1 . exon 291745 291788 . - . ID=Physo127085.3;Parent=Physo127085;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 291825 292143 . - 0 ID=Physo127085;Parent=Physo127085;rank=2 scaffold_1 . exon 291825 292143 . - . ID=Physo127085.2;Parent=Physo127085;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 292249 292341 . - 0 ID=Physo127085;Parent=Physo127085;rank=1 scaffold_1 . exon 292249 292341 . - . ID=Physo127085.1;Parent=Physo127085;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 293361 294064 . + . ID=Physo127086;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10066;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 293361 294064 . + . ID=Physo127086;Parent=Physo127086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 293361 293370 . + 0 ID=Physo127086;Parent=Physo127086;rank=1 scaffold_1 . exon 293361 293370 . + . ID=Physo127086.1;Parent=Physo127086;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 293409 293566 . + 0 ID=Physo127086;Parent=Physo127086;rank=2 scaffold_1 . exon 293409 293566 . + . ID=Physo127086.2;Parent=Physo127086;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 293631 293720 . + 0 ID=Physo127086;Parent=Physo127086;rank=3 scaffold_1 . exon 293631 293720 . + . ID=Physo127086.3;Parent=Physo127086;constitutive=1;rank=3 scaffold_1 . CDS 293816 294064 . + 0 ID=Physo127086;Parent=Physo127086;rank=4 scaffold_1 . exon 293816 294064 . + . ID=Physo127086.4;Parent=Physo127086;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 295596 298471 . + . ID=Physo127087;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10067;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 295596 298471 . + . ID=Physo127087;Parent=Physo127087;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 295596 296207 . + 0 ID=Physo127087;Parent=Physo127087;rank=1 scaffold_1 . exon 295596 296207 . + . ID=Physo127087.1;Parent=Physo127087;constitutive=1;rank=1 scaffold_1 . CDS 296799 296911 . + 0 ID=Physo127087;Parent=Physo127087;rank=2 scaffold_1 . exon 296799 296911 . + . ID=Physo127087.2;Parent=Physo127087;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 296962 297233 . + 0 ID=Physo127087;Parent=Physo127087;rank=3 scaffold_1 . exon 296962 297233 . + . ID=Physo127087.3;Parent=Physo127087;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 297284 298030 . + 0 ID=Physo127087;Parent=Physo127087;rank=4 scaffold_1 . exon 297284 298030 . + . ID=Physo127087.4;Parent=Physo127087;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 298173 298471 . + 0 ID=Physo127087;Parent=Physo127087;rank=5 scaffold_1 . exon 298173 298471 . + . ID=Physo127087.5;Parent=Physo127087;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 299554 303207 . + . ID=Physo127088;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10068;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 299554 303207 . + . ID=Physo127088;Parent=Physo127088;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 299554 299873 . + 0 ID=Physo127088;Parent=Physo127088;rank=1 scaffold_1 . exon 299554 299873 . + . ID=Physo127088.1;Parent=Physo127088;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 299893 300409 . + 0 ID=Physo127088;Parent=Physo127088;rank=2 scaffold_1 . CDS 300432 302147 . + 0 ID=Physo127088;Parent=Physo127088;rank=3 scaffold_1 . CDS 302171 302756 . + 0 ID=Physo127088;Parent=Physo127088;rank=4 scaffold_1 . CDS 302891 303207 . + 0 ID=Physo127088;Parent=Physo127088;rank=5 scaffold_1 . exon 299893 300409 . + . ID=Physo127088.2;Parent=Physo127088;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . exon 300432 302147 . + . ID=Physo127088.3;Parent=Physo127088;constitutive=1;rank=3 scaffold_1 . exon 302171 302756 . + . ID=Physo127088.4;Parent=Physo127088;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . exon 302891 303207 . + . ID=Physo127088.5;Parent=Physo127088;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 308978 311620 . - . ID=Physo127089;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10069;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 308978 311620 . - . ID=Physo127089;Parent=Physo127089;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 308978 309163 . - 0 ID=Physo127089;Parent=Physo127089;rank=6 scaffold_1 . exon 308978 309163 . - . ID=Physo127089.6;Parent=Physo127089;constitutive=1;rank=6 scaffold_1 . CDS 309235 309333 . - 0 ID=Physo127089;Parent=Physo127089;rank=5 scaffold_1 . exon 309235 309333 . - . ID=Physo127089.5;Parent=Physo127089;constitutive=1;rank=5 scaffold_1 . CDS 309353 309680 . - 0 ID=Physo127089;Parent=Physo127089;rank=4 scaffold_1 . exon 309353 309680 . - . ID=Physo127089.4;Parent=Physo127089;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 309917 310838 . - 0 ID=Physo127089;Parent=Physo127089;rank=3 scaffold_1 . CDS 310859 311183 . - 0 ID=Physo127089;Parent=Physo127089;rank=2 scaffold_1 . CDS 311237 311620 . - 0 ID=Physo127089;Parent=Physo127089;rank=1 scaffold_1 . biological_region 309800 309806 0.999 + . logic_name=eponine scaffold_1 . repeat_region 309869 309912 . ? . description=trf scaffold_1 . biological_region 309975 309976 0.999 - . logic_name=eponine scaffold_1 . repeat_region 311573 311626 . ? . description=dust scaffold_1 . repeat_region 311574 311618 . ? . description=trf scaffold_1 . repeat_region 312710 312885 . + . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 313478 314026 . + . description=GypsyPi-1c_I-int scaffold_1 . biological_region 314700 314701 0.999 + . logic_name=eponine scaffold_1 . repeat_region 314750 317675 . + . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 318167 318301 . + . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 318540 318568 . ? . description=trf scaffold_1 . exon 309917 310838 . - . ID=Physo127089.3;Parent=Physo127089;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . exon 310859 311183 . - . ID=Physo127089.2;Parent=Physo127089;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . exon 311237 311620 . - . ID=Physo127089.1;Parent=Physo127089;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 312671 318263 . + . ID=Physo127090;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10070;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 312671 318263 . + . ID=Physo127090;Parent=Physo127090;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 312671 313466 . + 0 ID=Physo127090;Parent=Physo127090;rank=1 scaffold_1 . exon 312671 313466 . + . ID=Physo127090.1;Parent=Physo127090;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 313754 314180 . + 0 ID=Physo127090;Parent=Physo127090;rank=2 scaffold_1 . exon 313754 314180 . + . ID=Physo127090.2;Parent=Physo127090;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 314443 315962 . + 0 ID=Physo127090;Parent=Physo127090;rank=3 scaffold_1 . exon 314443 315962 . + . ID=Physo127090.3;Parent=Physo127090;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 316007 316457 . + 0 ID=Physo127090;Parent=Physo127090;rank=4 scaffold_1 . exon 316007 316457 . + . ID=Physo127090.4;Parent=Physo127090;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 316627 317279 . + 0 ID=Physo127090;Parent=Physo127090;rank=5 scaffold_1 . exon 316627 317279 . + . ID=Physo127090.5;Parent=Physo127090;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 317521 318263 . + 0 ID=Physo127090;Parent=Physo127090;rank=6 scaffold_1 . exon 317521 318263 . + . ID=Physo127090.6;Parent=Physo127090;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 ensembl protein_coding_gene 324222 324676 . - . ID=Physo127091;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10071;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 324222 324676 . - . ID=Physo127091;Parent=Physo127091;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 324222 324470 . - 0 ID=Physo127091;Parent=Physo127091;rank=2 scaffold_1 . exon 324222 324470 . - . ID=Physo127091.2;Parent=Physo127091;constitutive=1;rank=2 scaffold_1 . CDS 324602 324676 . - 0 ID=Physo127091;Parent=Physo127091;rank=1 scaffold_1 . exon 324602 324676 . - . ID=Physo127091.1;Parent=Physo127091;constitutive=1;rank=1 scaffold_1 . repeat_region 330948 330977 . ? . description=trf scaffold_1 . biological_region 333228 333233 0.999 + . logic_name=eponine scaffold_1 . biological_region 333607 333610 0.999 + . logic_name=eponine scaffold_1 . biological_region 333979 333983 0.999 - . logic_name=eponine scaffold_1 . biological_region 334097 334100 0.999 - . logic_name=eponine scaffold_1 . repeat_region 337211 337248 . ? . description=trf scaffold_1 . repeat_region 337601 337608 . ? . description=dust scaffold_1 . repeat_region 339452 339808 . ? . description=trf scaffold_1 ensembl protein_coding_gene 335998 336549 . - . ID=Physo127092;biotype=protein_coding;description=PsAvh111 [Source:UniProtKB/TrEMBL%3BAcc:E0W4N1];external_name=estExt_fgenesh1_pg.C_10072;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 335998 336549 . - . ID=Physo127092;Parent=Physo127092;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 335998 336549 . - 0 ID=Physo127092;Parent=Physo127092;rank=1 scaffold_1 . exon 335998 336549 . - . ID=Physo127092.1;Parent=Physo127092;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 340450 341324 . + . ID=Physo127093;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10073;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 340450 341324 . + . ID=Physo127093;Parent=Physo127093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 340450 340558 . + 0 ID=Physo127093;Parent=Physo127093;rank=1 scaffold_1 . exon 340450 340558 . + . ID=Physo127093.1;Parent=Physo127093;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 340636 340687 . + 0 ID=Physo127093;Parent=Physo127093;rank=2 scaffold_1 . exon 340636 340687 . + . ID=Physo127093.2;Parent=Physo127093;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 340762 340961 . + 0 ID=Physo127093;Parent=Physo127093;rank=3 scaffold_1 . exon 340762 340961 . + . ID=Physo127093.3;Parent=Physo127093;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 341032 341324 . + 0 ID=Physo127093;Parent=Physo127093;rank=4 scaffold_1 . exon 341032 341324 . + . ID=Physo127093.4;Parent=Physo127093;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 341532 342401 . - . ID=Physo127094;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10074;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 341532 342401 . - . ID=Physo127094;Parent=Physo127094;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 341532 341827 . - 0 ID=Physo127094;Parent=Physo127094;rank=4 scaffold_1 . exon 341532 341827 . - . ID=Physo127094.4;Parent=Physo127094;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 341901 342091 . - 0 ID=Physo127094;Parent=Physo127094;rank=3 scaffold_1 . exon 341901 342091 . - . ID=Physo127094.3;Parent=Physo127094;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 342161 342227 . - 0 ID=Physo127094;Parent=Physo127094;rank=2 scaffold_1 . exon 342161 342227 . - . ID=Physo127094.2;Parent=Physo127094;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 342293 342401 . - 0 ID=Physo127094;Parent=Physo127094;rank=1 scaffold_1 . exon 342293 342401 . - . ID=Physo127094.1;Parent=Physo127094;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 342729 343882 . + . ID=Physo127095;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10075;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 342729 343882 . + . ID=Physo127095;Parent=Physo127095;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 342729 342885 . + . ID=Physo127095.1;Parent=Physo127095;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1 . CDS 342791 342885 . + 0 ID=Physo127095;Parent=Physo127095;rank=1 scaffold_1 . CDS 342960 343677 . + 0 ID=Physo127095;Parent=Physo127095;rank=2 scaffold_1 . exon 342960 343882 . + . ID=Physo127095.2;Parent=Physo127095;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 344934 346076 . - . ID=Physo127096;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10076;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 344934 346076 . - . ID=Physo127096;Parent=Physo127096;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 344934 345669 . - 0 ID=Physo127096;Parent=Physo127096;rank=2 scaffold_1 . exon 344934 345669 . - . ID=Physo127096.2;Parent=Physo127096;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 345767 345978 . - 0 ID=Physo127096;Parent=Physo127096;rank=1 scaffold_1 . exon 345767 346076 . - . ID=Physo127096.1;Parent=Physo127096;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 348617 350627 . + . ID=Physo127098;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10078;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 348617 350627 . + . ID=Physo127098;Parent=Physo127098;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 348617 348993 . + 0 ID=Physo127098;Parent=Physo127098;rank=1 scaffold_1 . exon 348617 348993 . + . ID=Physo127098.1;Parent=Physo127098;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 349086 349221 . + 0 ID=Physo127098;Parent=Physo127098;rank=2 scaffold_1 . exon 349086 349221 . + . ID=Physo127098.2;Parent=Physo127098;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 349296 349472 . + 0 ID=Physo127098;Parent=Physo127098;rank=3 scaffold_1 . exon 349296 349472 . + . ID=Physo127098.3;Parent=Physo127098;constitutive=1;rank=3 scaffold_1 . CDS 349584 349638 . + 0 ID=Physo127098;Parent=Physo127098;rank=4 scaffold_1 . CDS 349706 350515 . + 0 ID=Physo127098;Parent=Physo127098;rank=5 scaffold_1 . CDS 350611 350627 . + 0 ID=Physo127098;Parent=Physo127098;rank=6 scaffold_1 ensembl protein_coding_gene 346304 348013 . - . ID=Physo155236;biotype=protein_coding;external_name=C_scaffold_1000040;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 346304 348013 . - . ID=Physo155236;Parent=Physo155236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 346304 348013 . - 0 ID=Physo155236;Parent=Physo155236;rank=1 scaffold_1 . exon 346304 348013 . - . ID=Physo155236.1;Parent=Physo155236;constitutive=1;rank=1 scaffold_1 . biological_region 352281 352287 0.999 + . logic_name=eponine scaffold_1 . biological_region 352387 352392 0.999 - . logic_name=eponine scaffold_1 . biological_region 352565 352566 0.999 - . logic_name=eponine scaffold_1 . repeat_region 353826 353833 . ? . description=dust scaffold_1 . repeat_region 353957 353965 . ? . description=dust scaffold_1 . repeat_region 356010 356017 . ? . description=dust scaffold_1 . biological_region 358332 358334 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 354324 355948 . + . ID=Physo108138;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10003;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 354324 355948 . + . ID=Physo108138;Parent=Physo108138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 354324 355655 . + . ID=Physo108138.1;Parent=Physo108138;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 354350 355655 . + 0 ID=Physo108138;Parent=Physo108138;rank=1 scaffold_1 . CDS 355793 355794 . + 0 ID=Physo108138;Parent=Physo108138;rank=2 scaffold_1 . exon 355793 355794 . + . ID=Physo108138.2;Parent=Physo108138;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 355925 355948 . + 0 ID=Physo108138;Parent=Physo108138;rank=3 scaffold_1 . exon 355925 355948 . + . ID=Physo108138.3;Parent=Physo108138;constitutive=1;rank=3 scaffold_1 . exon 349584 349638 . + . ID=Physo127098.4;Parent=Physo127098;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . exon 349706 350515 . + . ID=Physo127098.5;Parent=Physo127098;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . exon 350611 350627 . + . ID=Physo127098.6;Parent=Physo127098;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 ensembl protein_coding_gene 350986 351888 . - . ID=Physo127099;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10079;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 350986 351888 . - . ID=Physo127099;Parent=Physo127099;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 350986 351888 . - 0 ID=Physo127099;Parent=Physo127099;rank=1 scaffold_1 . exon 350986 351888 . - . ID=Physo127099.1;Parent=Physo127099;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 352315 353736 . + . ID=Physo127100;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10080;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 352315 353736 . + . ID=Physo127100;Parent=Physo127100;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 352315 353736 . + 0 ID=Physo127100;Parent=Physo127100;rank=1 scaffold_1 . exon 352315 353736 . + . ID=Physo127100.1;Parent=Physo127100;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 358758 360212 . + . ID=Physo127102;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10082;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 358758 360212 . + . ID=Physo127102;Parent=Physo127102;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 358758 360212 . + 0 ID=Physo127102;Parent=Physo127102;rank=1 scaffold_1 . exon 358758 360212 . + . ID=Physo127102.1;Parent=Physo127102;constitutive=1;rank=1 scaffold_1 . repeat_region 368876 368927 . ? . description=trf scaffold_1 ensembl protein_coding_gene 363663 364981 . - . ID=Physo109780;biotype=protein_coding;external_name=estExt_Genewise1.C_10018;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 363663 364981 . - . ID=Physo109780;Parent=Physo109780;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 363663 364955 . - 0 ID=Physo109780;Parent=Physo109780;rank=1 scaffold_1 . exon 363663 364981 . - . ID=Physo109780.1;Parent=Physo109780;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 361792 363223 . + . ID=Physo127103;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10083;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 361792 363223 . + . ID=Physo127103;Parent=Physo127103;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 361792 362292 . + 0 ID=Physo127103;Parent=Physo127103;rank=1 scaffold_1 . exon 361792 362292 . + . ID=Physo127103.1;Parent=Physo127103;constitutive=1;rank=1 scaffold_1 . CDS 362452 362706 . + 0 ID=Physo127103;Parent=Physo127103;rank=2 scaffold_1 . exon 362452 362706 . + . ID=Physo127103.2;Parent=Physo127103;constitutive=1;rank=2 scaffold_1 . CDS 362753 363223 . + 0 ID=Physo127103;Parent=Physo127103;rank=3 scaffold_1 . exon 362753 363223 . + . ID=Physo127103.3;Parent=Physo127103;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 365666 367072 . - . ID=Physo127105;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10085;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 365666 367072 . - . ID=Physo127105;Parent=Physo127105;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 365666 367072 . - 0 ID=Physo127105;Parent=Physo127105;rank=1 scaffold_1 . exon 365666 367072 . - . ID=Physo127105.1;Parent=Physo127105;constitutive=1;rank=1 scaffold_1 . repeat_region 374389 374419 . ? . description=dust scaffold_1 . biological_region 374605 374608 0.999 + . logic_name=eponine scaffold_1 . biological_region 375197 375198 0.999 + . logic_name=eponine scaffold_1 . biological_region 375345 375349 0.999 - . logic_name=eponine scaffold_1 . biological_region 375378 375382 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 370738 372066 . + . ID=Physo127106;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10086;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 370738 372066 . + . ID=Physo127106;Parent=Physo127106;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 370738 370959 . + . ID=Physo127106.1;Parent=Physo127106;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 370750 370959 . + 0 ID=Physo127106;Parent=Physo127106;rank=1 scaffold_1 . CDS 371044 371925 . + 0 ID=Physo127106;Parent=Physo127106;rank=2 scaffold_1 . exon 371044 372066 . + . ID=Physo127106.2;Parent=Physo127106;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1 ensembl protein_coding_gene 372157 374889 . - . ID=Physo155238;biotype=protein_coding;external_name=C_scaffold_1000042;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 372157 374889 . - . ID=Physo155238;Parent=Physo155238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 372157 372362 . - 0 ID=Physo155238;Parent=Physo155238;rank=9 scaffold_1 . exon 372157 372362 . - . ID=Physo155238.9;Parent=Physo155238;constitutive=1;ensembl_phase=1;rank=9 scaffold_1 . CDS 372460 372583 . - 0 ID=Physo155238;Parent=Physo155238;rank=8 scaffold_1 . exon 372460 372583 . - . ID=Physo155238.8;Parent=Physo155238;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_1 . CDS 372866 372993 . - 0 ID=Physo155238;Parent=Physo155238;rank=7 scaffold_1 . exon 372866 372993 . - . ID=Physo155238.7;Parent=Physo155238;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 373057 373204 . - 0 ID=Physo155238;Parent=Physo155238;rank=6 scaffold_1 . exon 373057 373204 . - . ID=Physo155238.6;Parent=Physo155238;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_1 . CDS 373326 373388 . - 0 ID=Physo155238;Parent=Physo155238;rank=5 scaffold_1 . exon 373326 373388 . - . ID=Physo155238.5;Parent=Physo155238;constitutive=1;rank=5 scaffold_1 . CDS 373455 373568 . - 0 ID=Physo155238;Parent=Physo155238;rank=4 scaffold_1 . exon 373455 373568 . - . ID=Physo155238.4;Parent=Physo155238;constitutive=1;rank=4 scaffold_1 . CDS 373632 373729 . - 0 ID=Physo155238;Parent=Physo155238;rank=3 scaffold_1 . exon 373632 373729 . - . ID=Physo155238.3;Parent=Physo155238;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 373891 374213 . - 0 ID=Physo155238;Parent=Physo155238;rank=2 scaffold_1 . exon 373891 374213 . - . ID=Physo155238.2;Parent=Physo155238;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 374582 374889 . - 0 ID=Physo155238;Parent=Physo155238;rank=1 scaffold_1 . exon 374582 374889 . - . ID=Physo155238.1;Parent=Physo155238;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 380389 384813 . + . ID=Physo109790;biotype=protein_coding;external_name=estExt_Genewise1.C_10028;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 380389 384813 . + . ID=Physo109790;Parent=Physo109790;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 380389 381090 . + . ID=Physo109790.1;Parent=Physo109790;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 380410 381090 . + 0 ID=Physo109790;Parent=Physo109790;rank=1 scaffold_1 . CDS 381160 381309 . + 0 ID=Physo109790;Parent=Physo109790;rank=2 scaffold_1 . exon 381160 381309 . + . ID=Physo109790.2;Parent=Physo109790;constitutive=1;rank=2 scaffold_1 . CDS 381385 381698 . + 0 ID=Physo109790;Parent=Physo109790;rank=3 scaffold_1 . exon 381385 381698 . + . ID=Physo109790.3;Parent=Physo109790;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 381768 382233 . + 0 ID=Physo109790;Parent=Physo109790;rank=4 scaffold_1 . exon 381768 382233 . + . ID=Physo109790.4;Parent=Physo109790;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 382414 383549 . + 0 ID=Physo109790;Parent=Physo109790;rank=5 scaffold_1 . exon 382414 383549 . + . ID=Physo109790.5;Parent=Physo109790;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 383601 384232 . + 0 ID=Physo109790;Parent=Physo109790;rank=6 scaffold_1 . exon 383601 384232 . + . ID=Physo109790.6;Parent=Physo109790;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 384344 384526 . + 0 ID=Physo109790;Parent=Physo109790;rank=7 scaffold_1 . exon 384344 384526 . + . ID=Physo109790.7;Parent=Physo109790;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 384572 384813 . + 0 ID=Physo109790;Parent=Physo109790;rank=8 scaffold_1 . exon 384572 384813 . + . ID=Physo109790.8;Parent=Physo109790;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . biological_region 390226 390231 0.999 + . logic_name=eponine scaffold_1 . repeat_region 392606 392618 . ? . description=dust scaffold_1 . biological_region 396352 396356 0.999 + . logic_name=eponine scaffold_1 . biological_region 397999 398001 0.999 + . logic_name=eponine scaffold_1 . repeat_region 398435 398481 . ? . description=trf scaffold_1 . repeat_region 398436 398499 . ? . description=trf scaffold_1 ensembl protein_coding_gene 390437 391024 . + . ID=Physo127110;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10090;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 390437 391024 . + . ID=Physo127110;Parent=Physo127110;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 390437 391024 . + 0 ID=Physo127110;Parent=Physo127110;rank=1 scaffold_1 . exon 390437 391024 . + . ID=Physo127110.1;Parent=Physo127110;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 394936 399246 . + . ID=Physo127111;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10091;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 394936 399246 . + . ID=Physo127111;Parent=Physo127111;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 394936 395062 . + 0 ID=Physo127111;Parent=Physo127111;rank=1 scaffold_1 . exon 394936 395062 . + . ID=Physo127111.1;Parent=Physo127111;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 395102 397231 . + 0 ID=Physo127111;Parent=Physo127111;rank=2 scaffold_1 . exon 395102 397231 . + . ID=Physo127111.2;Parent=Physo127111;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 397794 399121 . + 0 ID=Physo127111;Parent=Physo127111;rank=3 scaffold_1 . exon 397794 399246 . + . ID=Physo127111.3;Parent=Physo127111;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_1 ensembl protein_coding_gene 399745 402087 . + . ID=Physo127112;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10092;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 399745 402087 . + . ID=Physo127112;Parent=Physo127112;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 399745 402087 . + 0 ID=Physo127112;Parent=Physo127112;rank=1 scaffold_1 . exon 399745 402087 . + . ID=Physo127112.1;Parent=Physo127112;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 403358 404500 . + . ID=Physo127113;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10093;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 403358 404500 . + . ID=Physo127113;Parent=Physo127113;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 403358 404419 . + 0 ID=Physo127113;Parent=Physo127113;rank=1 scaffold_1 . exon 403358 404500 . + . ID=Physo127113.1;Parent=Physo127113;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 404943 406644 . + . ID=Physo127114;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10094;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 404943 406644 . + . ID=Physo127114;Parent=Physo127114;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 404943 406206 . + 0 ID=Physo127114;Parent=Physo127114;rank=1 scaffold_1 . exon 404943 406206 . + . ID=Physo127114.1;Parent=Physo127114;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 406568 406644 . + 0 ID=Physo127114;Parent=Physo127114;rank=2 scaffold_1 . exon 406568 406644 . + . ID=Physo127114.2;Parent=Physo127114;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 408006 409784 . + . ID=Physo127115;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10095;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 408006 409784 . + . ID=Physo127115;Parent=Physo127115;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 408006 409784 . + 0 ID=Physo127115;Parent=Physo127115;rank=1 scaffold_1 . exon 408006 409784 . + . ID=Physo127115.1;Parent=Physo127115;constitutive=1;rank=1 scaffold_1 . biological_region 411969 411969 0.999 + . logic_name=eponine scaffold_1 . biological_region 412970 412973 0.999 + . logic_name=eponine scaffold_1 . biological_region 413085 413089 0.999 - . logic_name=eponine scaffold_1 . biological_region 414276 414279 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 410101 410342 . - . ID=Physo109792;biotype=protein_coding;external_name=estExt_Genewise1.C_10030;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 410101 410342 . - . ID=Physo109792;Parent=Physo109792;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 410101 410342 . - . ID=Physo109792.1;Parent=Physo109792;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 410103 410243 . - 0 ID=Physo109792;Parent=Physo109792;rank=1 scaffold_1 ensembl protein_coding_gene 411958 413079 . + . ID=Physo127116;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10096;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 411958 413079 . + . ID=Physo127116;Parent=Physo127116;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 411958 413079 . + 0 ID=Physo127116;Parent=Physo127116;rank=1 scaffold_1 . exon 411958 413079 . + . ID=Physo127116.1;Parent=Physo127116;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 418471 421720 . + . ID=Physo127117;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10097;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 418471 421720 . + . ID=Physo127117;Parent=Physo127117;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 418471 418492 . + 0 ID=Physo127117;Parent=Physo127117;rank=1 scaffold_1 . exon 418471 418492 . + . ID=Physo127117.1;Parent=Physo127117;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 418634 419473 . + 0 ID=Physo127117;Parent=Physo127117;rank=2 scaffold_1 . exon 418634 419473 . + . ID=Physo127117.2;Parent=Physo127117;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 419902 420501 . + 0 ID=Physo127117;Parent=Physo127117;rank=3 scaffold_1 . CDS 420612 420690 . + 0 ID=Physo127117;Parent=Physo127117;rank=4 scaffold_1 . CDS 420712 421720 . + 0 ID=Physo127117;Parent=Physo127117;rank=5 scaffold_1 . repeat_region 422231 422239 . ? . description=dust scaffold_1 . repeat_region 425112 425130 . ? . description=dust scaffold_1 . repeat_region 428888 429065 . ? . description=trf scaffold_1 . repeat_region 428909 428993 . ? . description=trf scaffold_1 . repeat_region 428958 429010 . ? . description=trf scaffold_1 . repeat_region 428983 429064 . ? . description=trf scaffold_1 . exon 419902 420501 . + . ID=Physo127117.3;Parent=Physo127117;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . exon 420612 420690 . + . ID=Physo127117.4;Parent=Physo127117;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . exon 420712 421720 . + . ID=Physo127117.5;Parent=Physo127117;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 ensembl protein_coding_gene 422547 426336 . + . ID=Physo127118;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10098;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 422547 426336 . + . ID=Physo127118;Parent=Physo127118;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 422547 424242 . + 0 ID=Physo127118;Parent=Physo127118;rank=1 scaffold_1 . exon 422547 424242 . + . ID=Physo127118.1;Parent=Physo127118;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 424421 425299 . + 0 ID=Physo127118;Parent=Physo127118;rank=2 scaffold_1 . exon 424421 425299 . + . ID=Physo127118.2;Parent=Physo127118;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 425615 426336 . + 0 ID=Physo127118;Parent=Physo127118;rank=3 scaffold_1 . exon 425615 426336 . + . ID=Physo127118.3;Parent=Physo127118;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . biological_region 429768 429772 0.999 - . logic_name=eponine scaffold_1 . biological_region 434725 434726 0.999 - . logic_name=eponine scaffold_1 . biological_region 435138 435142 0.999 - . logic_name=eponine scaffold_1 . biological_region 435931 435935 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 438178 438829 . + . ID=Physo127119;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10099;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 438178 438829 . + . ID=Physo127119;Parent=Physo127119;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 438178 438504 . + . ID=Physo127119.1;Parent=Physo127119;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1 . CDS 438239 438504 . + 0 ID=Physo127119;Parent=Physo127119;rank=1 scaffold_1 . CDS 438682 438829 . + 0 ID=Physo127119;Parent=Physo127119;rank=2 scaffold_1 . exon 438682 438829 . + . ID=Physo127119.2;Parent=Physo127119;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 439276 440982 . - . ID=Physo127120;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10100;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 439276 440982 . - . ID=Physo127120;Parent=Physo127120;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 439276 440982 . - 0 ID=Physo127120;Parent=Physo127120;rank=1 scaffold_1 . exon 439276 440982 . - . ID=Physo127120.1;Parent=Physo127120;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 441962 447266 . + . ID=Physo127121;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10101;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 441962 447266 . + . ID=Physo127121;Parent=Physo127121;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 441962 445226 . + 0 ID=Physo127121;Parent=Physo127121;rank=1 scaffold_1 . exon 441962 445226 . + . ID=Physo127121.1;Parent=Physo127121;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 445528 447266 . + 0 ID=Physo127121;Parent=Physo127121;rank=2 scaffold_1 . exon 445528 447266 . + . ID=Physo127121.2;Parent=Physo127121;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 447776 449426 . + . ID=Physo127122;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10102;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 447776 449426 . + . ID=Physo127122;Parent=Physo127122;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 447776 449285 . + 0 ID=Physo127122;Parent=Physo127122;rank=1 scaffold_1 . exon 447776 449285 . + . ID=Physo127122.1;Parent=Physo127122;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 449380 449426 . + 0 ID=Physo127122;Parent=Physo127122;rank=2 scaffold_1 . exon 449380 449426 . + . ID=Physo127122.2;Parent=Physo127122;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . repeat_region 452002 452138 . ? . description=dust scaffold_1 . biological_region 453281 453285 0.999 + . logic_name=eponine scaffold_1 . biological_region 453578 453582 0.999 - . logic_name=eponine scaffold_1 . repeat_region 453959 453966 . ? . description=dust scaffold_1 . repeat_region 454301 454328 . ? . description=dust scaffold_1 . repeat_region 454301 454328 . ? . description=trf scaffold_1 . repeat_region 454358 454382 . ? . description=dust scaffold_1 ensembl protein_coding_gene 451264 453428 . - . ID=Physo127123;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10103;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 451264 453428 . - . ID=Physo127123;Parent=Physo127123;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 451264 451963 . - 0 ID=Physo127123;Parent=Physo127123;rank=2 scaffold_1 . exon 451264 451963 . - . ID=Physo127123.2;Parent=Physo127123;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 452374 453428 . - 0 ID=Physo127123;Parent=Physo127123;rank=1 scaffold_1 . exon 452374 453428 . - . ID=Physo127123.1;Parent=Physo127123;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 458115 459117 . - . ID=Physo127125;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10105;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 458115 459117 . - . ID=Physo127125;Parent=Physo127125;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 458115 458129 . - 0 ID=Physo127125;Parent=Physo127125;rank=2 scaffold_1 . exon 458115 458129 . - . ID=Physo127125.2;Parent=Physo127125;constitutive=1;rank=2 scaffold_1 . CDS 458224 459117 . - 0 ID=Physo127125;Parent=Physo127125;rank=1 scaffold_1 . exon 458224 459117 . - . ID=Physo127125.1;Parent=Physo127125;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 453976 455243 . + . ID=Physo155243;biotype=protein_coding;external_name=C_scaffold_1000047;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 453976 455243 . + . ID=Physo155243;Parent=Physo155243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 453976 454091 . + 0 ID=Physo155243;Parent=Physo155243;rank=1 scaffold_1 . exon 453976 454091 . + . ID=Physo155243.1;Parent=Physo155243;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 454537 455243 . + 0 ID=Physo155243;Parent=Physo155243;rank=2 scaffold_1 . exon 454537 455243 . + . ID=Physo155243.2;Parent=Physo155243;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 459527 460150 . - . ID=Physo127126;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10106;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 459527 460150 . - . ID=Physo127126;Parent=Physo127126;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 459527 460150 . - 0 ID=Physo127126;Parent=Physo127126;rank=1 scaffold_1 . exon 459527 460150 . - . ID=Physo127126.1;Parent=Physo127126;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 462076 464728 . - . ID=Physo127127;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10107;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 462076 464728 . - . ID=Physo127127;Parent=Physo127127;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 462076 462095 . - 0 ID=Physo127127;Parent=Physo127127;rank=6 scaffold_1 . exon 462076 462095 . - . ID=Physo127127.6;Parent=Physo127127;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 462211 462217 . - 0 ID=Physo127127;Parent=Physo127127;rank=5 scaffold_1 . exon 462211 462217 . - . ID=Physo127127.5;Parent=Physo127127;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 462469 462849 . - 0 ID=Physo127127;Parent=Physo127127;rank=4 scaffold_1 . exon 462469 462849 . - . ID=Physo127127.4;Parent=Physo127127;constitutive=1;rank=4 scaffold_1 . CDS 462891 463150 . - 0 ID=Physo127127;Parent=Physo127127;rank=3 scaffold_1 . exon 462891 463150 . - . ID=Physo127127.3;Parent=Physo127127;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 463463 464174 . - 0 ID=Physo127127;Parent=Physo127127;rank=2 scaffold_1 . exon 463463 464174 . - . ID=Physo127127.2;Parent=Physo127127;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 464210 464728 . - 0 ID=Physo127127;Parent=Physo127127;rank=1 scaffold_1 . exon 464210 464728 . - . ID=Physo127127.1;Parent=Physo127127;constitutive=1;rank=1 scaffold_1 . repeat_region 470596 470603 . ? . description=dust scaffold_1 . repeat_region 471137 471147 . ? . description=dust scaffold_1 . biological_region 471145 471151 0.999 - . logic_name=eponine scaffold_1 . repeat_region 474715 474722 . ? . description=dust scaffold_1 ensembl protein_coding_gene 471975 472121 . - . ID=Physo109802;biotype=protein_coding;external_name=estExt_Genewise1.C_10040;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 471975 472121 . - . ID=Physo109802;Parent=Physo109802;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 471975 472109 . - 0 ID=Physo109802;Parent=Physo109802;rank=1 scaffold_1 . exon 471975 472121 . - . ID=Physo109802.1;Parent=Physo109802;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 474763 477184 . + . ID=Physo127128;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10108;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 474763 477184 . + . ID=Physo127128;Parent=Physo127128;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 474763 475037 . + 0 ID=Physo127128;Parent=Physo127128;rank=1 scaffold_1 . exon 474763 475037 . + . ID=Physo127128.1;Parent=Physo127128;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 475057 475392 . + 0 ID=Physo127128;Parent=Physo127128;rank=2 scaffold_1 . exon 475057 475392 . + . ID=Physo127128.2;Parent=Physo127128;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 475450 476330 . + 0 ID=Physo127128;Parent=Physo127128;rank=3 scaffold_1 . exon 475450 476330 . + . ID=Physo127128.3;Parent=Physo127128;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 476517 477184 . + 0 ID=Physo127128;Parent=Physo127128;rank=4 scaffold_1 . exon 476517 477184 . + . ID=Physo127128.4;Parent=Physo127128;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 477928 478740 . + . ID=Physo127129;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10109;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 477928 478740 . + . ID=Physo127129;Parent=Physo127129;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 477928 478740 . + 0 ID=Physo127129;Parent=Physo127129;rank=1 scaffold_1 . exon 477928 478740 . + . ID=Physo127129.1;Parent=Physo127129;constitutive=1;rank=1 scaffold_1 . repeat_region 479957 480056 . ? . description=trf scaffold_1 . repeat_region 479974 480013 . ? . description=trf scaffold_1 . repeat_region 479992 480047 . ? . description=trf scaffold_1 . repeat_region 479992 480055 . ? . description=trf scaffold_1 . repeat_region 481122 481158 . ? . description=trf scaffold_1 . repeat_region 482237 482290 . ? . description=trf scaffold_1 . repeat_region 485769 485821 . ? . description=trf scaffold_1 ensembl protein_coding_gene 480688 483151 . + . ID=Physo127130;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10110;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 480688 483151 . + . ID=Physo127130;Parent=Physo127130;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 480688 480897 . + 0 ID=Physo127130;Parent=Physo127130;rank=1 scaffold_1 . exon 480688 480897 . + . ID=Physo127130.1;Parent=Physo127130;constitutive=1;rank=1 scaffold_1 . CDS 480926 481223 . + 0 ID=Physo127130;Parent=Physo127130;rank=2 scaffold_1 . exon 480926 481223 . + . ID=Physo127130.2;Parent=Physo127130;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 481261 481353 . + 0 ID=Physo127130;Parent=Physo127130;rank=3 scaffold_1 . exon 481261 481353 . + . ID=Physo127130.3;Parent=Physo127130;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 481420 482013 . + 0 ID=Physo127130;Parent=Physo127130;rank=4 scaffold_1 . exon 481420 482013 . + . ID=Physo127130.4;Parent=Physo127130;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 482043 483151 . + 0 ID=Physo127130;Parent=Physo127130;rank=5 scaffold_1 . exon 482043 483151 . + . ID=Physo127130.5;Parent=Physo127130;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 487294 489095 . - . ID=Physo127131;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10111;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 487294 489095 . - . ID=Physo127131;Parent=Physo127131;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 487294 488305 . - 0 ID=Physo127131;Parent=Physo127131;rank=2 scaffold_1 . exon 487294 488305 . - . ID=Physo127131.2;Parent=Physo127131;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 488518 489095 . - 0 ID=Physo127131;Parent=Physo127131;rank=1 scaffold_1 . exon 488518 489095 . - . ID=Physo127131.1;Parent=Physo127131;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . repeat_region 489537 489586 . ? . description=dust scaffold_1 . repeat_region 491938 494862 . ? . description=dust scaffold_1 . biological_region 497494 497497 0.999 + . logic_name=eponine scaffold_1 . repeat_region 498265 498279 . ? . description=dust scaffold_1 . repeat_region 498829 498836 . ? . description=dust scaffold_1 ensembl protein_coding_gene 489997 491501 . - . ID=Physo127132;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10112;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 489997 491501 . - . ID=Physo127132;Parent=Physo127132;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 489997 491195 . - 0 ID=Physo127132;Parent=Physo127132;rank=2 scaffold_1 . exon 489997 491195 . - . ID=Physo127132.2;Parent=Physo127132;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 491459 491501 . - 0 ID=Physo127132;Parent=Physo127132;rank=1 scaffold_1 . exon 491459 491501 . - . ID=Physo127132.1;Parent=Physo127132;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 495923 497168 . + . ID=Physo127133;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10113;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 495923 497168 . + . ID=Physo127133;Parent=Physo127133;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 495923 496064 . + 0 ID=Physo127133;Parent=Physo127133;rank=1 scaffold_1 . exon 495923 496064 . + . ID=Physo127133.1;Parent=Physo127133;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 496292 496310 . + 0 ID=Physo127133;Parent=Physo127133;rank=2 scaffold_1 . exon 496292 496310 . + . ID=Physo127133.2;Parent=Physo127133;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 496409 496446 . + 0 ID=Physo127133;Parent=Physo127133;rank=3 scaffold_1 . exon 496409 496446 . + . ID=Physo127133.3;Parent=Physo127133;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 496849 497168 . + 0 ID=Physo127133;Parent=Physo127133;rank=4 scaffold_1 . exon 496849 497168 . + . ID=Physo127133.4;Parent=Physo127133;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . repeat_region 504137 504160 . ? . description=trf scaffold_1 ensembl protein_coding_gene 499608 500302 . + . ID=Physo127134;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10114;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 499608 500302 . + . ID=Physo127134;Parent=Physo127134;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 499608 499706 . + 0 ID=Physo127134;Parent=Physo127134;rank=1 scaffold_1 . exon 499608 499706 . + . ID=Physo127134.1;Parent=Physo127134;constitutive=1;rank=1 scaffold_1 . CDS 499874 500302 . + 0 ID=Physo127134;Parent=Physo127134;rank=2 scaffold_1 . exon 499874 500302 . + . ID=Physo127134.2;Parent=Physo127134;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 506800 507983 . - . ID=Physo127136;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10116;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 506800 507983 . - . ID=Physo127136;Parent=Physo127136;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 506800 507355 . - 0 ID=Physo127136;Parent=Physo127136;rank=2 scaffold_1 . exon 506800 507355 . - . ID=Physo127136.2;Parent=Physo127136;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 507388 507983 . - 0 ID=Physo127136;Parent=Physo127136;rank=1 scaffold_1 . exon 507388 507983 . - . ID=Physo127136.1;Parent=Physo127136;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 500434 504102 . - . ID=Physo155244;biotype=protein_coding;external_name=C_scaffold_1000048;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 500434 504102 . - . ID=Physo155244;Parent=Physo155244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 500434 501197 . - 0 ID=Physo155244;Parent=Physo155244;rank=6 scaffold_1 . exon 500434 501197 . - . ID=Physo155244.6;Parent=Physo155244;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 501233 501337 . - 0 ID=Physo155244;Parent=Physo155244;rank=5 scaffold_1 . exon 501233 501337 . - . ID=Physo155244.5;Parent=Physo155244;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 501511 501811 . - 0 ID=Physo155244;Parent=Physo155244;rank=4 scaffold_1 . exon 501511 501811 . - . ID=Physo155244.4;Parent=Physo155244;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 501907 502074 . - 0 ID=Physo155244;Parent=Physo155244;rank=3 scaffold_1 . exon 501907 502074 . - . ID=Physo155244.3;Parent=Physo155244;constitutive=1;rank=3 scaffold_1 . CDS 502520 503499 . - 0 ID=Physo155244;Parent=Physo155244;rank=2 scaffold_1 . exon 502520 503499 . - . ID=Physo155244.2;Parent=Physo155244;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 503775 504102 . - 0 ID=Physo155244;Parent=Physo155244;rank=1 scaffold_1 . exon 503775 504102 . - . ID=Physo155244.1;Parent=Physo155244;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . repeat_region 514806 514814 . ? . description=dust scaffold_1 . biological_region 515772 515774 0.999 - . logic_name=eponine scaffold_1 . biological_region 518031 518031 0.999 - . logic_name=eponine scaffold_1 . biological_region 518068 518073 0.999 + . logic_name=eponine scaffold_1 . biological_region 518075 518077 0.999 - . logic_name=eponine scaffold_1 . biological_region 518127 518131 0.999 - . logic_name=eponine scaffold_1 . biological_region 518129 518134 0.999 + . logic_name=eponine scaffold_1 . biological_region 518158 518162 0.999 - . logic_name=eponine scaffold_1 . repeat_region 519304 519315 . ? . description=dust scaffold_1 ensembl protein_coding_gene 517652 518839 . + . ID=Physo127137;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10117;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 517652 518839 . + . ID=Physo127137;Parent=Physo127137;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 517652 518839 . + 0 ID=Physo127137;Parent=Physo127137;rank=1 scaffold_1 . exon 517652 518839 . + . ID=Physo127137.1;Parent=Physo127137;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 519472 519921 . + . ID=Physo127138;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10118;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 519472 519921 . + . ID=Physo127138;Parent=Physo127138;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 519472 519921 . + 0 ID=Physo127138;Parent=Physo127138;rank=1 scaffold_1 . exon 519472 519921 . + . ID=Physo127138.1;Parent=Physo127138;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 520657 521936 . - . ID=Physo127139;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10119;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 520657 521936 . - . ID=Physo127139;Parent=Physo127139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 520657 520979 . - 0 ID=Physo127139;Parent=Physo127139;rank=4 scaffold_1 . exon 520657 520979 . - . ID=Physo127139.4;Parent=Physo127139;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 521096 521207 . - 0 ID=Physo127139;Parent=Physo127139;rank=3 scaffold_1 . exon 521096 521207 . - . ID=Physo127139.3;Parent=Physo127139;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 521271 521631 . - 0 ID=Physo127139;Parent=Physo127139;rank=2 scaffold_1 . exon 521271 521631 . - . ID=Physo127139.2;Parent=Physo127139;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 521692 521936 . - 0 ID=Physo127139;Parent=Physo127139;rank=1 scaffold_1 . exon 521692 521936 . - . ID=Physo127139.1;Parent=Physo127139;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 523623 524378 . - . ID=Physo127140;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10120;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 523623 524378 . - . ID=Physo127140;Parent=Physo127140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 523623 524378 . - 0 ID=Physo127140;Parent=Physo127140;rank=1 scaffold_1 . exon 523623 524378 . - . ID=Physo127140.1;Parent=Physo127140;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 527251 528733 . + . ID=Physo127141;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10121;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 527251 528733 . + . ID=Physo127141;Parent=Physo127141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 527251 527292 . + 0 ID=Physo127141;Parent=Physo127141;rank=1 scaffold_1 . exon 527251 527292 . + . ID=Physo127141.1;Parent=Physo127141;constitutive=1;rank=1 scaffold_1 . CDS 527602 528585 . + 0 ID=Physo127141;Parent=Physo127141;rank=2 scaffold_1 . exon 527602 528585 . + . ID=Physo127141.2;Parent=Physo127141;constitutive=1;rank=2 scaffold_1 . CDS 528707 528733 . + 0 ID=Physo127141;Parent=Physo127141;rank=3 scaffold_1 . exon 528707 528733 . + . ID=Physo127141.3;Parent=Physo127141;constitutive=1;rank=3 scaffold_1 . repeat_region 531826 531871 . ? . description=trf scaffold_1 . biological_region 534261 534262 0.999 - . logic_name=eponine scaffold_1 . repeat_region 534607 534647 . ? . description=trf scaffold_1 . repeat_region 535026 535175 . ? . description=trf scaffold_1 . repeat_region 535027 535133 . ? . description=trf scaffold_1 . repeat_region 535121 535158 . ? . description=trf scaffold_1 . repeat_region 535430 535479 . ? . description=dust scaffold_1 . repeat_region 535621 535666 . ? . description=trf scaffold_1 . biological_region 538056 538057 0.999 - . logic_name=eponine scaffold_1 . repeat_region 538402 538442 . ? . description=trf scaffold_1 . repeat_region 538821 538970 . ? . description=trf scaffold_1 . repeat_region 538822 538928 . ? . description=trf scaffold_1 . repeat_region 538916 538953 . ? . description=trf scaffold_1 ensembl protein_coding_gene 529554 530738 . - . ID=Physo127142;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10122;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 529554 530738 . - . ID=Physo127142;Parent=Physo127142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 529554 530738 . - 0 ID=Physo127142;Parent=Physo127142;rank=1 scaffold_1 . exon 529554 530738 . - . ID=Physo127142.1;Parent=Physo127142;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 541938 547421 . - . ID=Physo127143;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10123;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 541938 547421 . - . ID=Physo127143;Parent=Physo127143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 541938 542450 . - 0 ID=Physo127143;Parent=Physo127143;rank=10 scaffold_1 . exon 541938 542450 . - . ID=Physo127143.10;Parent=Physo127143;constitutive=1;rank=10 scaffold_1 . CDS 542526 542953 . - 0 ID=Physo127143;Parent=Physo127143;rank=9 scaffold_1 . exon 542526 542953 . - . ID=Physo127143.9;Parent=Physo127143;constitutive=1;ensembl_phase=1;rank=9 scaffold_1 . CDS 543017 543066 . - 0 ID=Physo127143;Parent=Physo127143;rank=8 scaffold_1 . exon 543017 543066 . - . ID=Physo127143.8;Parent=Physo127143;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=8 scaffold_1 . CDS 543330 543640 . - 0 ID=Physo127143;Parent=Physo127143;rank=7 scaffold_1 . exon 543330 543640 . - . ID=Physo127143.7;Parent=Physo127143;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_1 . CDS 543697 544355 . - 0 ID=Physo127143;Parent=Physo127143;rank=6 scaffold_1 . exon 543697 544355 . - . ID=Physo127143.6;Parent=Physo127143;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 544376 545025 . - 0 ID=Physo127143;Parent=Physo127143;rank=5 scaffold_1 . exon 544376 545025 . - . ID=Physo127143.5;Parent=Physo127143;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 545132 545138 . - 0 ID=Physo127143;Parent=Physo127143;rank=4 scaffold_1 . exon 545132 545138 . - . ID=Physo127143.4;Parent=Physo127143;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 545785 546388 . - 0 ID=Physo127143;Parent=Physo127143;rank=3 scaffold_1 . exon 545785 546388 . - . ID=Physo127143.3;Parent=Physo127143;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 546766 547193 . - 0 ID=Physo127143;Parent=Physo127143;rank=2 scaffold_1 . exon 546766 547193 . - . ID=Physo127143.2;Parent=Physo127143;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 547229 547421 . - 0 ID=Physo127143;Parent=Physo127143;rank=1 scaffold_1 . exon 547229 547421 . - . ID=Physo127143.1;Parent=Physo127143;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . repeat_region 548381 555466 . ? . description=dust scaffold_1 . biological_region 557845 557847 0.999 - . logic_name=eponine scaffold_1 . repeat_region 558222 558282 . ? . description=trf scaffold_1 . repeat_region 558474 558483 . ? . description=dust scaffold_1 . repeat_region 566223 566416 . - . description=Polinton-1_PI scaffold_1 . repeat_region 567149 567206 . - . description=Polinton-1_PI scaffold_1 ensembl protein_coding_gene 562307 566403 . - . ID=Physo127144;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10124;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 562307 566403 . - . ID=Physo127144;Parent=Physo127144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 562307 563653 . - 0 ID=Physo127144;Parent=Physo127144;rank=4 scaffold_1 . exon 562307 563653 . - . ID=Physo127144.4;Parent=Physo127144;constitutive=1;rank=4 scaffold_1 . CDS 563764 563954 . - 0 ID=Physo127144;Parent=Physo127144;rank=3 scaffold_1 . exon 563764 563954 . - . ID=Physo127144.3;Parent=Physo127144;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 564485 565152 . - 0 ID=Physo127144;Parent=Physo127144;rank=2 scaffold_1 . exon 564485 565152 . - . ID=Physo127144.2;Parent=Physo127144;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 565594 566387 . - 0 ID=Physo127144;Parent=Physo127144;rank=1 scaffold_1 . exon 565594 566403 . - . ID=Physo127144.1;Parent=Physo127144;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 568305 570327 . - . ID=Physo127145;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10125;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 568305 570327 . - . ID=Physo127145;Parent=Physo127145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 568305 568682 . - 0 ID=Physo127145;Parent=Physo127145;rank=3 scaffold_1 . exon 568305 568682 . - . ID=Physo127145.3;Parent=Physo127145;constitutive=1;rank=3 scaffold_1 . CDS 568753 569119 . - 0 ID=Physo127145;Parent=Physo127145;rank=2 scaffold_1 . exon 568753 569119 . - . ID=Physo127145.2;Parent=Physo127145;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 569249 570327 . - 0 ID=Physo127145;Parent=Physo127145;rank=1 scaffold_1 . exon 569249 570327 . - . ID=Physo127145.1;Parent=Physo127145;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . biological_region 569370 569372 0.999 - . logic_name=eponine scaffold_1 . biological_region 569426 569428 0.999 + . logic_name=eponine scaffold_1 . biological_region 569518 569524 0.999 - . logic_name=eponine scaffold_1 . biological_region 571519 571526 0.999 + . logic_name=eponine scaffold_1 . biological_region 571540 571543 0.999 + . logic_name=eponine scaffold_1 . biological_region 571583 571587 0.999 + . logic_name=eponine scaffold_1 . repeat_region 571683 571715 . ? . description=trf scaffold_1 . repeat_region 571683 571763 . ? . description=dust scaffold_1 . biological_region 571920 571921 0.999 + . logic_name=eponine scaffold_1 . repeat_region 572624 572662 . ? . description=trf scaffold_1 . repeat_region 573124 573156 . ? . description=trf scaffold_1 . repeat_region 573481 573528 . ? . description=trf scaffold_1 . biological_region 574848 574851 0.999 - . logic_name=eponine scaffold_1 . biological_region 574902 574906 0.999 + . logic_name=eponine scaffold_1 . biological_region 574908 574910 0.999 - . logic_name=eponine scaffold_1 . biological_region 574930 574932 0.999 - . logic_name=eponine scaffold_1 . biological_region 574952 574958 0.999 - . logic_name=eponine scaffold_1 . biological_region 574974 574977 0.999 - . logic_name=eponine scaffold_1 . biological_region 576855 576858 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 571357 574296 . + . ID=Physo127146;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10126;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 571357 574296 . + . ID=Physo127146;Parent=Physo127146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 571357 574296 . + 0 ID=Physo127146;Parent=Physo127146;rank=1 scaffold_1 . exon 571357 574296 . + . ID=Physo127146.1;Parent=Physo127146;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 574404 575348 . - . ID=Physo127147;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10127;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 574404 575348 . - . ID=Physo127147;Parent=Physo127147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 574404 575348 . - 0 ID=Physo127147;Parent=Physo127147;rank=1 scaffold_1 . exon 574404 575348 . - . ID=Physo127147.1;Parent=Physo127147;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 576005 576958 . - . ID=Physo127148;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10128;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 576005 576958 . - . ID=Physo127148;Parent=Physo127148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 576005 576958 . - 0 ID=Physo127148;Parent=Physo127148;rank=1 scaffold_1 . exon 576005 576958 . - . ID=Physo127148.1;Parent=Physo127148;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 577476 579797 . - . ID=Physo127149;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10129;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 577476 579797 . - . ID=Physo127149;Parent=Physo127149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 577476 578332 . - 0 ID=Physo127149;Parent=Physo127149;rank=2 scaffold_1 . exon 577476 578332 . - . ID=Physo127149.2;Parent=Physo127149;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 578870 579797 . - 0 ID=Physo127149;Parent=Physo127149;rank=1 scaffold_1 . exon 578870 579797 . - . ID=Physo127149.1;Parent=Physo127149;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 580539 581365 . + . ID=Physo127150;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10130;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 580539 581365 . + . ID=Physo127150;Parent=Physo127150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 580539 581150 . + 0 ID=Physo127150;Parent=Physo127150;rank=1 scaffold_1 . exon 580539 581150 . + . ID=Physo127150.1;Parent=Physo127150;constitutive=1;rank=1 scaffold_1 . CDS 581279 581365 . + 0 ID=Physo127150;Parent=Physo127150;rank=2 scaffold_1 . exon 581279 581365 . + . ID=Physo127150.2;Parent=Physo127150;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 583186 584628 . + . ID=Physo127151;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10131;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 583186 584628 . + . ID=Physo127151;Parent=Physo127151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 583186 584628 . + 0 ID=Physo127151;Parent=Physo127151;rank=1 scaffold_1 . exon 583186 584628 . + . ID=Physo127151.1;Parent=Physo127151;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 586410 590183 . - . ID=Physo127152;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10132;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 586410 590183 . - . ID=Physo127152;Parent=Physo127152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 586410 586601 . - 0 ID=Physo127152;Parent=Physo127152;rank=5 scaffold_1 . exon 586410 586601 . - . ID=Physo127152.5;Parent=Physo127152;constitutive=1;rank=5 scaffold_1 . CDS 586871 588206 . - 0 ID=Physo127152;Parent=Physo127152;rank=4 scaffold_1 . exon 586871 588206 . - . ID=Physo127152.4;Parent=Physo127152;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 588512 589154 . - 0 ID=Physo127152;Parent=Physo127152;rank=3 scaffold_1 . exon 588512 589154 . - . ID=Physo127152.3;Parent=Physo127152;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 589311 589453 . - 0 ID=Physo127152;Parent=Physo127152;rank=2 scaffold_1 . CDS 589567 590183 . - 0 ID=Physo127152;Parent=Physo127152;rank=1 scaffold_1 . biological_region 592590 592591 0.999 - . logic_name=eponine scaffold_1 . biological_region 592610 592613 0.999 - . logic_name=eponine scaffold_1 . biological_region 592681 592681 0.999 - . logic_name=eponine scaffold_1 . repeat_region 593020 593074 . ? . description=dust scaffold_1 . repeat_region 593020 593074 . ? . description=trf scaffold_1 . biological_region 593450 593454 0.999 - . logic_name=eponine scaffold_1 . repeat_region 594006 595640 . ? . description=dust scaffold_1 . repeat_region 595641 598464 . ? . description=dust scaffold_1 . exon 589311 589453 . - . ID=Physo127152.2;Parent=Physo127152;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . exon 589567 590183 . - . ID=Physo127152.1;Parent=Physo127152;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 593032 593598 . + . ID=Physo127153;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10133;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 593032 593598 . + . ID=Physo127153;Parent=Physo127153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 593032 593598 . + 0 ID=Physo127153;Parent=Physo127153;rank=1 scaffold_1 . exon 593032 593598 . + . ID=Physo127153.1;Parent=Physo127153;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 598553 599989 . - . ID=Physo127154;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10134;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 598553 599989 . - . ID=Physo127154;Parent=Physo127154;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 598553 598573 . - 0 ID=Physo127154;Parent=Physo127154;rank=4 scaffold_1 . exon 598553 598573 . - . ID=Physo127154.4;Parent=Physo127154;constitutive=1;rank=4 scaffold_1 . CDS 598603 598673 . - 0 ID=Physo127154;Parent=Physo127154;rank=3 scaffold_1 . exon 598603 598673 . - . ID=Physo127154.3;Parent=Physo127154;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 598707 599373 . - 0 ID=Physo127154;Parent=Physo127154;rank=2 scaffold_1 . exon 598707 599373 . - . ID=Physo127154.2;Parent=Physo127154;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 599609 599989 . - 0 ID=Physo127154;Parent=Physo127154;rank=1 scaffold_1 . exon 599609 599989 . - . ID=Physo127154.1;Parent=Physo127154;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 601210 610427 . + . ID=Physo127155;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10135;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 601210 610427 . + . ID=Physo127155;Parent=Physo127155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 601210 602419 . + 0 ID=Physo127155;Parent=Physo127155;rank=1 scaffold_1 . exon 601210 602419 . + . ID=Physo127155.1;Parent=Physo127155;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 602584 602769 . + 0 ID=Physo127155;Parent=Physo127155;rank=2 scaffold_1 . exon 602584 602769 . + . ID=Physo127155.2;Parent=Physo127155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 602803 603904 . + 0 ID=Physo127155;Parent=Physo127155;rank=3 scaffold_1 . exon 602803 603904 . + . ID=Physo127155.3;Parent=Physo127155;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 604214 604242 . + 0 ID=Physo127155;Parent=Physo127155;rank=4 scaffold_1 . exon 604214 604242 . + . ID=Physo127155.4;Parent=Physo127155;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 604566 605831 . + 0 ID=Physo127155;Parent=Physo127155;rank=5 scaffold_1 . exon 604566 605831 . + . ID=Physo127155.5;Parent=Physo127155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 605928 606575 . + 0 ID=Physo127155;Parent=Physo127155;rank=6 scaffold_1 . exon 605928 606575 . + . ID=Physo127155.6;Parent=Physo127155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 606609 608015 . + 0 ID=Physo127155;Parent=Physo127155;rank=7 scaffold_1 . exon 606609 608015 . + . ID=Physo127155.7;Parent=Physo127155;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 608147 608465 . + 0 ID=Physo127155;Parent=Physo127155;rank=8 scaffold_1 . exon 608147 608465 . + . ID=Physo127155.8;Parent=Physo127155;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_1 . CDS 608525 608703 . + 0 ID=Physo127155;Parent=Physo127155;rank=9 scaffold_1 . exon 608525 608703 . + . ID=Physo127155.9;Parent=Physo127155;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_1 . CDS 609182 609432 . + 0 ID=Physo127155;Parent=Physo127155;rank=10 scaffold_1 . exon 609182 609432 . + . ID=Physo127155.10;Parent=Physo127155;constitutive=1;ensembl_phase=1;rank=10 scaffold_1 . CDS 609478 610271 . + 0 ID=Physo127155;Parent=Physo127155;rank=11 scaffold_1 . CDS 610418 610427 . + 0 ID=Physo127155;Parent=Physo127155;rank=12 scaffold_1 . biological_region 613127 613127 0.999 - . logic_name=eponine scaffold_1 . repeat_region 614601 614616 . ? . description=dust scaffold_1 . biological_region 615680 615686 0.999 - . logic_name=eponine scaffold_1 . repeat_region 616225 616234 . ? . description=dust scaffold_1 . biological_region 616252 616262 0.999 + . logic_name=eponine scaffold_1 . biological_region 618501 618503 0.999 + . logic_name=eponine scaffold_1 . exon 609478 610271 . + . ID=Physo127155.11;Parent=Physo127155;constitutive=1;ensembl_end_phase=2;rank=11 scaffold_1 . exon 610418 610427 . + . ID=Physo127155.12;Parent=Physo127155;constitutive=1;ensembl_phase=2;rank=12 scaffold_1 ensembl protein_coding_gene 619282 620381 . - . ID=Physo127156;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10136;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 619282 620381 . - . ID=Physo127156;Parent=Physo127156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 619282 619758 . - 0 ID=Physo127156;Parent=Physo127156;rank=2 scaffold_1 . exon 619282 619758 . - . ID=Physo127156.2;Parent=Physo127156;constitutive=1;rank=2 scaffold_1 . CDS 619860 620381 . - 0 ID=Physo127156;Parent=Physo127156;rank=1 scaffold_1 . exon 619860 620381 . - . ID=Physo127156.1;Parent=Physo127156;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 623289 624338 . - . ID=Physo127157;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10137;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 623289 624338 . - . ID=Physo127157;Parent=Physo127157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 623289 624338 . - 0 ID=Physo127157;Parent=Physo127157;rank=1 scaffold_1 . exon 623289 624338 . - . ID=Physo127157.1;Parent=Physo127157;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 626774 629055 . - . ID=Physo127158;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10138;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 626774 629055 . - . ID=Physo127158;Parent=Physo127158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 626774 627160 . - 0 ID=Physo127158;Parent=Physo127158;rank=3 scaffold_1 . exon 626774 627160 . - . ID=Physo127158.3;Parent=Physo127158;constitutive=1;rank=3 scaffold_1 . CDS 627253 627559 . - 0 ID=Physo127158;Parent=Physo127158;rank=2 scaffold_1 . exon 627253 627559 . - . ID=Physo127158.2;Parent=Physo127158;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 627860 629055 . - 0 ID=Physo127158;Parent=Physo127158;rank=1 scaffold_1 . exon 627860 629055 . - . ID=Physo127158.1;Parent=Physo127158;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . repeat_region 634954 635088 . ? . description=trf scaffold_1 . repeat_region 635069 635167 . ? . description=trf scaffold_1 . biological_region 635359 635367 0.999 + . logic_name=eponine scaffold_1 . biological_region 636916 636924 0.999 - . logic_name=eponine scaffold_1 . biological_region 636937 636938 0.999 + . logic_name=eponine scaffold_1 . biological_region 636974 636980 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 631171 631983 . + . ID=Physo127159;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10139;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 631171 631983 . + . ID=Physo127159;Parent=Physo127159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 631171 631222 . + 0 ID=Physo127159;Parent=Physo127159;rank=1 scaffold_1 . exon 631171 631222 . + . ID=Physo127159.1;Parent=Physo127159;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 631268 631410 . + 0 ID=Physo127159;Parent=Physo127159;rank=2 scaffold_1 . exon 631268 631410 . + . ID=Physo127159.2;Parent=Physo127159;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 631464 631715 . + 0 ID=Physo127159;Parent=Physo127159;rank=3 scaffold_1 . exon 631464 631734 . + . ID=Physo127159.3;Parent=Physo127159;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1 . exon 631820 631865 . + . ID=Physo127159.4;Parent=Physo127159;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=4 scaffold_1 . exon 631963 631983 . + . ID=Physo127159.5;Parent=Physo127159;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=5 scaffold_1 ensembl protein_coding_gene 633480 634430 . + . ID=Physo127160;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10140;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 633480 634430 . + . ID=Physo127160;Parent=Physo127160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 633480 634430 . + 0 ID=Physo127160;Parent=Physo127160;rank=1 scaffold_1 . exon 633480 634430 . + . ID=Physo127160.1;Parent=Physo127160;constitutive=1;rank=1 scaffold_1 . repeat_region 641433 641440 . ? . description=dust scaffold_1 . repeat_region 641821 641833 . ? . description=dust scaffold_1 . repeat_region 644467 644474 . ? . description=dust scaffold_1 . repeat_region 647518 647526 . ? . description=dust scaffold_1 . repeat_region 648397 648591 . + . description=Polinton-1_PI scaffold_1 ensembl protein_coding_gene 644797 645816 . + . ID=Physo108139;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10004;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 644797 645816 . + . ID=Physo108139;Parent=Physo108139;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 644797 645816 . + 0 ID=Physo108139;Parent=Physo108139;rank=1 scaffold_1 . exon 644797 645816 . + . ID=Physo108139.1;Parent=Physo108139;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 646404 647138 . - . ID=Physo127162;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10142;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 646404 647138 . - . ID=Physo127162;Parent=Physo127162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 646404 647138 . - 0 ID=Physo127162;Parent=Physo127162;rank=1 scaffold_1 . exon 646404 647138 . - . ID=Physo127162.1;Parent=Physo127162;constitutive=1;rank=1 scaffold_1 . repeat_region 651208 651275 . ? . description=trf scaffold_1 . repeat_region 652271 652331 . ? . description=trf scaffold_1 . repeat_region 652277 652331 . ? . description=trf scaffold_1 . repeat_region 652669 652710 . ? . description=trf scaffold_1 . repeat_region 652669 652716 . + . description=(CTG)n scaffold_1 . repeat_region 652670 652710 . ? . description=trf scaffold_1 . repeat_region 652670 652710 . ? . description=trf scaffold_1 . biological_region 653480 653483 0.999 + . logic_name=eponine scaffold_1 . biological_region 653998 653999 0.999 - . logic_name=eponine scaffold_1 . repeat_region 654838 654857 . ? . description=trf scaffold_1 . biological_region 654943 654950 0.999 - . logic_name=eponine scaffold_1 . biological_region 654963 654971 0.999 - . logic_name=eponine scaffold_1 . biological_region 655217 655226 0.999 + . logic_name=eponine scaffold_1 . biological_region 655398 655400 0.999 - . logic_name=eponine scaffold_1 . biological_region 658491 658496 0.999 - . logic_name=eponine scaffold_1 . biological_region 658566 658570 0.999 - . logic_name=eponine scaffold_1 . biological_region 658712 658714 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 650039 651007 . + . ID=Physo108140;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10005;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 650039 651007 . + . ID=Physo108140;Parent=Physo108140;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 650039 650123 . + . ID=Physo108140.1;Parent=Physo108140;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 650100 650123 . + 0 ID=Physo108140;Parent=Physo108140;rank=1 scaffold_1 . CDS 650265 651005 . + 0 ID=Physo108140;Parent=Physo108140;rank=2 scaffold_1 . exon 650265 651007 . + . ID=Physo108140.2;Parent=Physo108140;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1 ensembl protein_coding_gene 658338 659478 . + . ID=Physo108141;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10006;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 658338 659478 . + . ID=Physo108141;Parent=Physo108141;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 658338 658898 . + 0 ID=Physo108141;Parent=Physo108141;rank=1 scaffold_1 . exon 658338 658898 . + . ID=Physo108141.1;Parent=Physo108141;constitutive=1;rank=1 scaffold_1 . CDS 658976 659069 . + 0 ID=Physo108141;Parent=Physo108141;rank=2 scaffold_1 . exon 658976 659069 . + . ID=Physo108141.2;Parent=Physo108141;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 659150 659418 . + 0 ID=Physo108141;Parent=Physo108141;rank=3 scaffold_1 ensembl protein_coding_gene 649322 649947 . + . ID=Physo127163;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10143;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 649322 649947 . + . ID=Physo127163;Parent=Physo127163;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 649322 649624 . + 0 ID=Physo127163;Parent=Physo127163;rank=1 scaffold_1 . exon 649322 649624 . + . ID=Physo127163.1;Parent=Physo127163;constitutive=1;rank=1 scaffold_1 . CDS 649828 649947 . + 0 ID=Physo127163;Parent=Physo127163;rank=2 scaffold_1 . exon 649828 649947 . + . ID=Physo127163.2;Parent=Physo127163;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 651931 654168 . - . ID=Physo127165;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10145;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 651931 654168 . - . ID=Physo127165;Parent=Physo127165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 651931 653955 . - 0 ID=Physo127165;Parent=Physo127165;rank=2 scaffold_1 . exon 651931 653955 . - . ID=Physo127165.2;Parent=Physo127165;constitutive=1;rank=2 scaffold_1 . CDS 654077 654109 . - 0 ID=Physo127165;Parent=Physo127165;rank=1 scaffold_1 . exon 654077 654168 . - . ID=Physo127165.1;Parent=Physo127165;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 655877 658156 . + . ID=Physo127166;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10146;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 655877 658156 . + . ID=Physo127166;Parent=Physo127166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 655877 656173 . + 0 ID=Physo127166;Parent=Physo127166;rank=1 scaffold_1 . exon 655877 656173 . + . ID=Physo127166.1;Parent=Physo127166;constitutive=1;rank=1 scaffold_1 . CDS 656284 656422 . + 0 ID=Physo127166;Parent=Physo127166;rank=2 scaffold_1 . exon 656284 656422 . + . ID=Physo127166.2;Parent=Physo127166;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 656516 656674 . + 0 ID=Physo127166;Parent=Physo127166;rank=3 scaffold_1 . exon 656516 656674 . + . ID=Physo127166.3;Parent=Physo127166;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 656756 656977 . + 0 ID=Physo127166;Parent=Physo127166;rank=4 scaffold_1 . exon 656756 656977 . + . ID=Physo127166.4;Parent=Physo127166;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 657055 657115 . + 0 ID=Physo127166;Parent=Physo127166;rank=5 scaffold_1 . exon 657055 657115 . + . ID=Physo127166.5;Parent=Physo127166;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1 . CDS 657181 657241 . + 0 ID=Physo127166;Parent=Physo127166;rank=6 scaffold_1 . exon 657181 657241 . + . ID=Physo127166.6;Parent=Physo127166;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 657588 657669 . + 0 ID=Physo127166;Parent=Physo127166;rank=7 scaffold_1 . exon 657588 657669 . + . ID=Physo127166.7;Parent=Physo127166;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . CDS 657742 657988 . + 0 ID=Physo127166;Parent=Physo127166;rank=8 scaffold_1 . exon 657742 657988 . + . ID=Physo127166.8;Parent=Physo127166;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_1 . CDS 658069 658156 . + 0 ID=Physo127166;Parent=Physo127166;rank=9 scaffold_1 . exon 658069 658156 . + . ID=Physo127166.9;Parent=Physo127166;constitutive=1;ensembl_phase=2;rank=9 scaffold_1 . repeat_region 660836 660894 . ? . description=dust scaffold_1 . exon 659150 659478 . + . ID=Physo108141.3;Parent=Physo108141;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_1 ensembl protein_coding_gene 659684 661505 . - . ID=Physo108142;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10007;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 659684 661505 . - . ID=Physo108142;Parent=Physo108142;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 659684 660229 . - 0 ID=Physo108142;Parent=Physo108142;rank=5 scaffold_1 . exon 659684 660229 . - . ID=Physo108142.5;Parent=Physo108142;constitutive=1;rank=5 scaffold_1 . CDS 660317 660417 . - 0 ID=Physo108142;Parent=Physo108142;rank=4 scaffold_1 . exon 660317 660417 . - . ID=Physo108142.4;Parent=Physo108142;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 660494 660609 . - 0 ID=Physo108142;Parent=Physo108142;rank=3 scaffold_1 . exon 660494 660609 . - . ID=Physo108142.3;Parent=Physo108142;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 660676 660804 . - 0 ID=Physo108142;Parent=Physo108142;rank=2 scaffold_1 . exon 660676 660804 . - . ID=Physo108142.2;Parent=Physo108142;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 660889 661505 . - 0 ID=Physo108142;Parent=Physo108142;rank=1 scaffold_1 . exon 660889 661505 . - . ID=Physo108142.1;Parent=Physo108142;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 661767 664299 . + . ID=Physo127169;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10149;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 661767 664299 . + . ID=Physo127169;Parent=Physo127169;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 661767 662649 . + 0 ID=Physo127169;Parent=Physo127169;rank=1 scaffold_1 . exon 661767 662649 . + . ID=Physo127169.1;Parent=Physo127169;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 662726 664299 . + 0 ID=Physo127169;Parent=Physo127169;rank=2 scaffold_1 . exon 662726 664299 . + . ID=Physo127169.2;Parent=Physo127169;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 666015 667575 . - . ID=Physo127170;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10150;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 666015 667575 . - . ID=Physo127170;Parent=Physo127170;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 666015 666294 . - . ID=Physo127170.3;Parent=Physo127170;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=3 scaffold_1 . CDS 666072 666294 . - 0 ID=Physo127170;Parent=Physo127170;rank=3 scaffold_1 . CDS 666604 667333 . - 0 ID=Physo127170;Parent=Physo127170;rank=2 scaffold_1 . exon 666604 667333 . - . ID=Physo127170.2;Parent=Physo127170;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 667365 667575 . - 0 ID=Physo127170;Parent=Physo127170;rank=1 scaffold_1 . exon 667365 667575 . - . ID=Physo127170.1;Parent=Physo127170;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 673948 675462 . + . ID=Physo127171;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10151;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 673948 675462 . + . ID=Physo127171;Parent=Physo127171;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 673948 675462 . + 0 ID=Physo127171;Parent=Physo127171;rank=1 scaffold_1 . exon 673948 675462 . + . ID=Physo127171.1;Parent=Physo127171;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 678782 679180 . + . ID=Physo127172;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10152;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 678782 679180 . + . ID=Physo127172;Parent=Physo127172;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 678782 679180 . + 0 ID=Physo127172;Parent=Physo127172;rank=1 scaffold_1 . exon 678782 679180 . + . ID=Physo127172.1;Parent=Physo127172;constitutive=1;rank=1 scaffold_1 . repeat_region 680504 680784 . ? . description=trf scaffold_1 . repeat_region 680506 680861 . ? . description=trf scaffold_1 . repeat_region 683875 683882 . ? . description=dust scaffold_1 . repeat_region 685829 685887 . ? . description=trf scaffold_1 . repeat_region 689098 689105 . ? . description=dust scaffold_1 ensembl protein_coding_gene 681283 682027 . + . ID=Physo127173;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10153;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 681283 682027 . + . ID=Physo127173;Parent=Physo127173;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 681283 681330 . + 0 ID=Physo127173;Parent=Physo127173;rank=1 scaffold_1 . exon 681283 681330 . + . ID=Physo127173.1;Parent=Physo127173;constitutive=1;rank=1 scaffold_1 . CDS 681452 682027 . + 0 ID=Physo127173;Parent=Physo127173;rank=2 scaffold_1 . exon 681452 682027 . + . ID=Physo127173.2;Parent=Physo127173;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 684861 687274 . + . ID=Physo127174;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10154;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 684861 687274 . + . ID=Physo127174;Parent=Physo127174;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 684861 686179 . + 0 ID=Physo127174;Parent=Physo127174;rank=1 scaffold_1 . exon 684861 686179 . + . ID=Physo127174.1;Parent=Physo127174;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 686425 686525 . + 0 ID=Physo127174;Parent=Physo127174;rank=2 scaffold_1 . exon 686425 686525 . + . ID=Physo127174.2;Parent=Physo127174;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 686632 686706 . + 0 ID=Physo127174;Parent=Physo127174;rank=3 scaffold_1 . exon 686632 686706 . + . ID=Physo127174.3;Parent=Physo127174;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 686784 687274 . + 0 ID=Physo127174;Parent=Physo127174;rank=4 scaffold_1 . exon 686784 687274 . + . ID=Physo127174.4;Parent=Physo127174;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . biological_region 695929 695931 0.999 - . logic_name=eponine scaffold_1 . biological_region 698410 698414 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 690872 693285 . - . ID=Physo127175;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10155;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 690872 693285 . - . ID=Physo127175;Parent=Physo127175;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 690872 691362 . - 0 ID=Physo127175;Parent=Physo127175;rank=4 scaffold_1 . exon 690872 691362 . - . ID=Physo127175.4;Parent=Physo127175;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 691440 691514 . - 0 ID=Physo127175;Parent=Physo127175;rank=3 scaffold_1 . exon 691440 691514 . - . ID=Physo127175.3;Parent=Physo127175;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 691621 691721 . - 0 ID=Physo127175;Parent=Physo127175;rank=2 scaffold_1 . exon 691621 691721 . - . ID=Physo127175.2;Parent=Physo127175;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 691967 693285 . - 0 ID=Physo127175;Parent=Physo127175;rank=1 scaffold_1 . exon 691967 693285 . - . ID=Physo127175.1;Parent=Physo127175;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 693693 695054 . - . ID=Physo127176;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10156;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 693693 695054 . - . ID=Physo127176;Parent=Physo127176;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 693693 695054 . - 0 ID=Physo127176;Parent=Physo127176;rank=1 scaffold_1 . exon 693693 695054 . - . ID=Physo127176.1;Parent=Physo127176;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 696534 697493 . + . ID=Physo127177;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10157;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 696534 697493 . + . ID=Physo127177;Parent=Physo127177;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 696534 696584 . + 0 ID=Physo127177;Parent=Physo127177;rank=1 scaffold_1 . exon 696534 696584 . + . ID=Physo127177.1;Parent=Physo127177;constitutive=1;rank=1 scaffold_1 . CDS 696665 696794 . + 0 ID=Physo127177;Parent=Physo127177;rank=2 scaffold_1 . exon 696665 696794 . + . ID=Physo127177.2;Parent=Physo127177;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 696865 696953 . + 0 ID=Physo127177;Parent=Physo127177;rank=3 scaffold_1 . exon 696865 696953 . + . ID=Physo127177.3;Parent=Physo127177;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 697016 697142 . + 0 ID=Physo127177;Parent=Physo127177;rank=4 scaffold_1 . exon 697016 697142 . + . ID=Physo127177.4;Parent=Physo127177;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 697210 697493 . + 0 ID=Physo127177;Parent=Physo127177;rank=5 scaffold_1 . exon 697210 697493 . + . ID=Physo127177.5;Parent=Physo127177;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 697739 698115 . - . ID=Physo127178;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10158;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 697739 698115 . - . ID=Physo127178;Parent=Physo127178;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 697739 698115 . - . ID=Physo127178.1;Parent=Physo127178;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 697741 698115 . - 0 ID=Physo127178;Parent=Physo127178;rank=1 scaffold_1 ensembl protein_coding_gene 698471 699280 . + . ID=Physo127179;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10159;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 698471 699280 . + . ID=Physo127179;Parent=Physo127179;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 698471 698506 . + . ID=Physo127179.1;Parent=Physo127179;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 698495 698506 . + 0 ID=Physo127179;Parent=Physo127179;rank=1 scaffold_1 . CDS 698803 699168 . + 0 ID=Physo127179;Parent=Physo127179;rank=2 scaffold_1 . exon 698803 699280 . + . ID=Physo127179.2;Parent=Physo127179;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1 . repeat_region 701001 701009 . ? . description=dust scaffold_1 . repeat_region 701202 701222 . ? . description=dust scaffold_1 . repeat_region 703210 703229 . ? . description=trf scaffold_1 ensembl protein_coding_gene 699624 701716 . - . ID=Physo127180;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10160;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 699624 701716 . - . ID=Physo127180;Parent=Physo127180;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 699624 699636 . - . ID=Physo127180.9;Parent=Physo127180;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=9 scaffold_1 . exon 699720 699847 . - . ID=Physo127180.8;Parent=Physo127180;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=8 scaffold_1 . CDS 699844 699847 . - 0 ID=Physo127180;Parent=Physo127180;rank=8 scaffold_1 . CDS 699903 700094 . - 0 ID=Physo127180;Parent=Physo127180;rank=7 scaffold_1 . exon 699903 700094 . - . ID=Physo127180.7;Parent=Physo127180;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=7 scaffold_1 . CDS 700189 700277 . - 0 ID=Physo127180;Parent=Physo127180;rank=6 scaffold_1 . exon 700189 700277 . - . ID=Physo127180.6;Parent=Physo127180;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1 . CDS 700355 700988 . - 0 ID=Physo127180;Parent=Physo127180;rank=5 scaffold_1 . exon 700355 700988 . - . ID=Physo127180.5;Parent=Physo127180;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 701107 701171 . - 0 ID=Physo127180;Parent=Physo127180;rank=4 scaffold_1 . exon 701107 701171 . - . ID=Physo127180.4;Parent=Physo127180;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 701277 701441 . - 0 ID=Physo127180;Parent=Physo127180;rank=3 scaffold_1 . exon 701277 701441 . - . ID=Physo127180.3;Parent=Physo127180;constitutive=1;rank=3 scaffold_1 . CDS 701526 701629 . - 0 ID=Physo127180;Parent=Physo127180;rank=2 scaffold_1 . exon 701526 701629 . - . ID=Physo127180.2;Parent=Physo127180;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 701695 701716 . - 0 ID=Physo127180;Parent=Physo127180;rank=1 scaffold_1 . exon 701695 701716 . - . ID=Physo127180.1;Parent=Physo127180;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 704509 708689 . + . ID=Physo127181;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10161;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 704509 708689 . + . ID=Physo127181;Parent=Physo127181;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 704509 708329 . + 0 ID=Physo127181;Parent=Physo127181;rank=1 scaffold_1 . exon 704509 708329 . + . ID=Physo127181.1;Parent=Physo127181;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 708413 708556 . + 0 ID=Physo127181;Parent=Physo127181;rank=2 scaffold_1 . exon 708413 708556 . + . ID=Physo127181.2;Parent=Physo127181;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 708632 708689 . + 0 ID=Physo127181;Parent=Physo127181;rank=3 scaffold_1 . exon 708632 708689 . + . ID=Physo127181.3;Parent=Physo127181;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 ensembl protein_coding_gene 708863 711166 . - . ID=Physo127182;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10162;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 708863 711166 . - . ID=Physo127182;Parent=Physo127182;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 708863 711166 . - 0 ID=Physo127182;Parent=Physo127182;rank=1 scaffold_1 . exon 708863 711166 . - . ID=Physo127182.1;Parent=Physo127182;constitutive=1;rank=1 scaffold_1 . biological_region 709687 709688 0.999 + . logic_name=eponine scaffold_1 . biological_region 709837 709840 0.999 - . logic_name=eponine scaffold_1 . biological_region 710301 710307 0.999 + . logic_name=eponine scaffold_1 . biological_region 710451 710454 0.999 - . logic_name=eponine scaffold_1 . biological_region 710486 710487 0.999 - . logic_name=eponine scaffold_1 . biological_region 710486 710488 0.999 + . logic_name=eponine scaffold_1 . biological_region 710808 710814 0.999 + . logic_name=eponine scaffold_1 . biological_region 710855 710856 0.999 + . logic_name=eponine scaffold_1 . biological_region 711009 711011 0.999 - . logic_name=eponine scaffold_1 . biological_region 711010 711013 0.999 + . logic_name=eponine scaffold_1 . biological_region 711040 711042 0.999 - . logic_name=eponine scaffold_1 . biological_region 711062 711069 0.999 + . logic_name=eponine scaffold_1 . biological_region 711078 711079 0.999 - . logic_name=eponine scaffold_1 . biological_region 711080 711084 0.999 + . logic_name=eponine scaffold_1 . biological_region 711092 711096 0.999 + . logic_name=eponine scaffold_1 . biological_region 711109 711120 0.999 - . logic_name=eponine scaffold_1 . biological_region 711257 711259 0.999 - . logic_name=eponine scaffold_1 . biological_region 711458 711458 0.999 + . logic_name=eponine scaffold_1 . biological_region 713254 713256 0.999 + . logic_name=eponine scaffold_1 . biological_region 713959 713962 0.999 + . logic_name=eponine scaffold_1 . biological_region 714258 714261 0.999 - . logic_name=eponine scaffold_1 . biological_region 714301 714305 0.999 - . logic_name=eponine scaffold_1 . biological_region 715271 715275 0.999 - . logic_name=eponine scaffold_1 . biological_region 715348 715350 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 711498 712676 . + . ID=Physo127183;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10163;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 711498 712676 . + . ID=Physo127183;Parent=Physo127183;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 711498 712676 . + . ID=Physo127183.1;Parent=Physo127183;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 711511 712617 . + 0 ID=Physo127183;Parent=Physo127183;rank=1 scaffold_1 ensembl protein_coding_gene 712656 714496 . - . ID=Physo127184;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10164;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 712656 714496 . - . ID=Physo127184;Parent=Physo127184;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 712656 714496 . - . ID=Physo127184.1;Parent=Physo127184;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 712814 714496 . - 0 ID=Physo127184;Parent=Physo127184;rank=1 scaffold_1 . repeat_region 719777 719831 . ? . description=trf scaffold_1 . repeat_region 721567 721616 . ? . description=dust scaffold_1 . repeat_region 722149 722261 . ? . description=trf scaffold_1 . repeat_region 723896 723904 . ? . description=dust scaffold_1 . repeat_region 727689 727748 . ? . description=trf scaffold_1 . repeat_region 727930 727953 . ? . description=dust scaffold_1 . repeat_region 728259 728283 . ? . description=trf scaffold_1 . repeat_region 728259 728283 . ? . description=dust scaffold_1 ensembl protein_coding_gene 720902 721467 . - . ID=Physo127185;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10165;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 720902 721467 . - . ID=Physo127185;Parent=Physo127185;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 720902 720988 . - 0 ID=Physo127185;Parent=Physo127185;rank=2 scaffold_1 . exon 720902 720988 . - . ID=Physo127185.2;Parent=Physo127185;constitutive=1;rank=2 scaffold_1 . CDS 721057 721467 . - 0 ID=Physo127185;Parent=Physo127185;rank=1 scaffold_1 . exon 721057 721467 . - . ID=Physo127185.1;Parent=Physo127185;constitutive=1;rank=1 scaffold_1 . biological_region 730695 730697 0.999 + . logic_name=eponine scaffold_1 . biological_region 734234 734237 0.999 - . logic_name=eponine scaffold_1 . biological_region 737772 737776 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 731136 734532 . + . ID=Physo127186;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10166;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 731136 734532 . + . ID=Physo127186;Parent=Physo127186;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 731136 731998 . + 0 ID=Physo127186;Parent=Physo127186;rank=1 scaffold_1 . exon 731136 731998 . + . ID=Physo127186.1;Parent=Physo127186;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 732152 732579 . + 0 ID=Physo127186;Parent=Physo127186;rank=2 scaffold_1 . exon 732152 732579 . + . ID=Physo127186.2;Parent=Physo127186;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 733438 734301 . + 0 ID=Physo127186;Parent=Physo127186;rank=3 scaffold_1 . exon 733438 734301 . + . ID=Physo127186.3;Parent=Physo127186;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 734396 734532 . + 0 ID=Physo127186;Parent=Physo127186;rank=4 scaffold_1 . exon 734396 734532 . + . ID=Physo127186.4;Parent=Physo127186;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . repeat_region 740302 740316 . ? . description=dust scaffold_1 . repeat_region 744875 744918 . ? . description=trf scaffold_1 . biological_region 753818 753821 0.999 + . logic_name=eponine scaffold_1 . biological_region 755525 755529 0.999 - . logic_name=eponine scaffold_1 . repeat_region 758827 758971 . + . description=(CAGT)n scaffold_1 ensembl protein_coding_gene 755007 755900 . - . ID=Physo127187;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10167;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 755007 755900 . - . ID=Physo127187;Parent=Physo127187;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 755007 755783 . - 0 ID=Physo127187;Parent=Physo127187;rank=2 scaffold_1 . exon 755007 755783 . - . ID=Physo127187.2;Parent=Physo127187;constitutive=1;rank=2 scaffold_1 . CDS 755826 755900 . - 0 ID=Physo127187;Parent=Physo127187;rank=1 scaffold_1 . exon 755826 755900 . - . ID=Physo127187.1;Parent=Physo127187;constitutive=1;rank=1 scaffold_1 . repeat_region 760486 760493 . ? . description=dust scaffold_1 . repeat_region 765560 765567 . ? . description=dust scaffold_1 ensembl protein_coding_gene 759137 760310 . - . ID=Physo127188;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10168;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 759137 760310 . - . ID=Physo127188;Parent=Physo127188;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 759137 759141 . - 0 ID=Physo127188;Parent=Physo127188;rank=5 scaffold_1 . exon 759137 759141 . - . ID=Physo127188.5;Parent=Physo127188;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 759168 759225 . - 0 ID=Physo127188;Parent=Physo127188;rank=4 scaffold_1 . exon 759168 759225 . - . ID=Physo127188.4;Parent=Physo127188;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 759250 759744 . - 0 ID=Physo127188;Parent=Physo127188;rank=3 scaffold_1 . exon 759250 759744 . - . ID=Physo127188.3;Parent=Physo127188;constitutive=1;rank=3 scaffold_1 . CDS 759793 759946 . - 0 ID=Physo127188;Parent=Physo127188;rank=2 scaffold_1 . exon 759793 759946 . - . ID=Physo127188.2;Parent=Physo127188;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 759977 760293 . - 0 ID=Physo127188;Parent=Physo127188;rank=1 scaffold_1 . exon 759977 760310 . - . ID=Physo127188.1;Parent=Physo127188;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 761171 762370 . + . ID=Physo127189;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10169;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 761171 762370 . + . ID=Physo127189;Parent=Physo127189;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 761171 762370 . + 0 ID=Physo127189;Parent=Physo127189;rank=1 scaffold_1 . exon 761171 762370 . + . ID=Physo127189.1;Parent=Physo127189;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 762674 763892 . - . ID=Physo127190;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10170;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 762674 763892 . - . ID=Physo127190;Parent=Physo127190;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 762674 763412 . - . ID=Physo127190.2;Parent=Physo127190;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_1 . CDS 762728 763412 . - 0 ID=Physo127190;Parent=Physo127190;rank=2 scaffold_1 . CDS 763495 763892 . - 0 ID=Physo127190;Parent=Physo127190;rank=1 scaffold_1 . exon 763495 763892 . - . ID=Physo127190.1;Parent=Physo127190;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 765955 767835 . + . ID=Physo127191;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10171;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 765955 767835 . + . ID=Physo127191;Parent=Physo127191;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 765955 767835 . + . ID=Physo127191.1;Parent=Physo127191;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 766095 767765 . + 0 ID=Physo127191;Parent=Physo127191;rank=1 scaffold_1 ensembl protein_coding_gene 768125 769985 . - . ID=Physo127192;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10172;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 768125 769985 . - . ID=Physo127192;Parent=Physo127192;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 768125 768421 . - 0 ID=Physo127192;Parent=Physo127192;rank=7 scaffold_1 . exon 768125 768421 . - . ID=Physo127192.7;Parent=Physo127192;constitutive=1;rank=7 scaffold_1 . CDS 768505 768816 . - 0 ID=Physo127192;Parent=Physo127192;rank=6 scaffold_1 . exon 768505 768816 . - . ID=Physo127192.6;Parent=Physo127192;constitutive=1;rank=6 scaffold_1 . CDS 768887 768948 . - 0 ID=Physo127192;Parent=Physo127192;rank=5 scaffold_1 . exon 768887 768948 . - . ID=Physo127192.5;Parent=Physo127192;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 769013 769504 . - 0 ID=Physo127192;Parent=Physo127192;rank=4 scaffold_1 . CDS 769577 769650 . - 0 ID=Physo127192;Parent=Physo127192;rank=3 scaffold_1 . CDS 769721 769780 . - 0 ID=Physo127192;Parent=Physo127192;rank=2 scaffold_1 . CDS 769858 769985 . - 0 ID=Physo127192;Parent=Physo127192;rank=1 scaffold_1 . repeat_region 772462 772599 . ? . description=trf scaffold_1 . biological_region 772485 772485 0.999 + . logic_name=eponine scaffold_1 . exon 769013 769504 . - . ID=Physo127192.4;Parent=Physo127192;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . exon 769577 769650 . - . ID=Physo127192.3;Parent=Physo127192;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . exon 769721 769780 . - . ID=Physo127192.2;Parent=Physo127192;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . exon 769858 769985 . - . ID=Physo127192.1;Parent=Physo127192;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 774085 774781 . + . ID=Physo127193;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10173;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 774085 774781 . + . ID=Physo127193;Parent=Physo127193;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 774085 774255 . + 0 ID=Physo127193;Parent=Physo127193;rank=1 scaffold_1 . exon 774085 774255 . + . ID=Physo127193.1;Parent=Physo127193;constitutive=1;rank=1 scaffold_1 . CDS 774347 774781 . + 0 ID=Physo127193;Parent=Physo127193;rank=2 scaffold_1 . exon 774347 774781 . + . ID=Physo127193.2;Parent=Physo127193;constitutive=1;rank=2 scaffold_1 . repeat_region 781329 781340 . ? . description=dust scaffold_1 . repeat_region 783331 783340 . ? . description=dust scaffold_1 . repeat_region 785907 785958 . ? . description=dust scaffold_1 ensembl protein_coding_gene 786692 787896 . + . ID=Physo127194;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10174;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 786692 787896 . + . ID=Physo127194;Parent=Physo127194;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 786692 786832 . + 0 ID=Physo127194;Parent=Physo127194;rank=1 scaffold_1 . exon 786692 786832 . + . ID=Physo127194.1;Parent=Physo127194;constitutive=1;rank=1 scaffold_1 . CDS 786961 787113 . + 0 ID=Physo127194;Parent=Physo127194;rank=2 scaffold_1 . exon 786961 787113 . + . ID=Physo127194.2;Parent=Physo127194;constitutive=1;rank=2 scaffold_1 . CDS 787263 787750 . + 0 ID=Physo127194;Parent=Physo127194;rank=3 scaffold_1 . exon 787263 787750 . + . ID=Physo127194.3;Parent=Physo127194;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 787851 787896 . + 0 ID=Physo127194;Parent=Physo127194;rank=4 scaffold_1 . exon 787851 787896 . + . ID=Physo127194.4;Parent=Physo127194;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . biological_region 795360 795360 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 793064 795427 . + . ID=Physo127195;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10175;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 793064 795427 . + . ID=Physo127195;Parent=Physo127195;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 793064 793607 . + 0 ID=Physo127195;Parent=Physo127195;rank=1 scaffold_1 . exon 793064 793607 . + . ID=Physo127195.1;Parent=Physo127195;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 793650 795427 . + 0 ID=Physo127195;Parent=Physo127195;rank=2 scaffold_1 . exon 793650 795427 . + . ID=Physo127195.2;Parent=Physo127195;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 795940 800981 . + . ID=Physo127196;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10176;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 795940 800981 . + . ID=Physo127196;Parent=Physo127196;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 795940 798362 . + 0 ID=Physo127196;Parent=Physo127196;rank=1 scaffold_1 . exon 795940 798362 . + . ID=Physo127196.1;Parent=Physo127196;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 798390 798431 . + 0 ID=Physo127196;Parent=Physo127196;rank=2 scaffold_1 . exon 798390 798431 . + . ID=Physo127196.2;Parent=Physo127196;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 798654 799263 . + 0 ID=Physo127196;Parent=Physo127196;rank=3 scaffold_1 . exon 798654 799263 . + . ID=Physo127196.3;Parent=Physo127196;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 799318 799557 . + 0 ID=Physo127196;Parent=Physo127196;rank=4 scaffold_1 . CDS 799794 800248 . + 0 ID=Physo127196;Parent=Physo127196;rank=5 scaffold_1 . CDS 800534 800981 . + 0 ID=Physo127196;Parent=Physo127196;rank=6 scaffold_1 . repeat_region 805183 805197 . ? . description=dust scaffold_1 . exon 799318 799557 . + . ID=Physo127196.4;Parent=Physo127196;constitutive=1;rank=4 scaffold_1 . exon 799794 800248 . + . ID=Physo127196.5;Parent=Physo127196;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . exon 800534 800981 . + . ID=Physo127196.6;Parent=Physo127196;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 ensembl protein_coding_gene 801797 804279 . - . ID=Physo127197;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10177;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 801797 804279 . - . ID=Physo127197;Parent=Physo127197;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 801797 802407 . - 0 ID=Physo127197;Parent=Physo127197;rank=4 scaffold_1 . exon 801797 802407 . - . ID=Physo127197.4;Parent=Physo127197;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 802602 803033 . - 0 ID=Physo127197;Parent=Physo127197;rank=3 scaffold_1 . exon 802602 803033 . - . ID=Physo127197.3;Parent=Physo127197;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 803102 803290 . - 0 ID=Physo127197;Parent=Physo127197;rank=2 scaffold_1 . exon 803102 803290 . - . ID=Physo127197.2;Parent=Physo127197;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 803352 804279 . - 0 ID=Physo127197;Parent=Physo127197;rank=1 scaffold_1 . exon 803352 804279 . - . ID=Physo127197.1;Parent=Physo127197;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 805372 805924 . + . ID=Physo127198;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10178;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 805372 805924 . + . ID=Physo127198;Parent=Physo127198;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 805372 805552 . + 0 ID=Physo127198;Parent=Physo127198;rank=1 scaffold_1 . exon 805372 805552 . + . ID=Physo127198.1;Parent=Physo127198;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 805644 805924 . + 0 ID=Physo127198;Parent=Physo127198;rank=2 scaffold_1 . exon 805644 805924 . + . ID=Physo127198.2;Parent=Physo127198;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 808220 816206 . - . ID=Physo127199;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10179;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 808220 816206 . - . ID=Physo127199;Parent=Physo127199;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 808220 808242 . - 0 ID=Physo127199;Parent=Physo127199;rank=9 scaffold_1 . exon 808220 808242 . - . ID=Physo127199.9;Parent=Physo127199;constitutive=1;ensembl_phase=1;rank=9 scaffold_1 . CDS 808559 810413 . - 0 ID=Physo127199;Parent=Physo127199;rank=8 scaffold_1 . exon 808559 810413 . - . ID=Physo127199.8;Parent=Physo127199;constitutive=1;ensembl_end_phase=1;rank=8 scaffold_1 . CDS 810527 810754 . - 0 ID=Physo127199;Parent=Physo127199;rank=7 scaffold_1 . CDS 810983 811604 . - 0 ID=Physo127199;Parent=Physo127199;rank=6 scaffold_1 . CDS 811859 813904 . - 0 ID=Physo127199;Parent=Physo127199;rank=5 scaffold_1 . CDS 813928 814133 . - 0 ID=Physo127199;Parent=Physo127199;rank=4 scaffold_1 . CDS 814183 814257 . - 0 ID=Physo127199;Parent=Physo127199;rank=3 scaffold_1 . CDS 814703 816115 . - 0 ID=Physo127199;Parent=Physo127199;rank=2 scaffold_1 . CDS 816153 816206 . - 0 ID=Physo127199;Parent=Physo127199;rank=1 scaffold_1 . biological_region 809454 809455 0.999 + . logic_name=eponine scaffold_1 . exon 810527 810754 . - . ID=Physo127199.7;Parent=Physo127199;constitutive=1;rank=7 scaffold_1 . exon 810983 811604 . - . ID=Physo127199.6;Parent=Physo127199;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . exon 811859 813904 . - . ID=Physo127199.5;Parent=Physo127199;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_1 . exon 813928 814133 . - . ID=Physo127199.4;Parent=Physo127199;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . exon 814183 814257 . - . ID=Physo127199.3;Parent=Physo127199;constitutive=1;rank=3 scaffold_1 . exon 814703 816115 . - . ID=Physo127199.2;Parent=Physo127199;constitutive=1;rank=2 scaffold_1 . exon 816153 816206 . - . ID=Physo127199.1;Parent=Physo127199;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 818218 821668 . - . ID=Physo127200;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10180;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 818218 821668 . - . ID=Physo127200;Parent=Physo127200;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 818218 818704 . - 0 ID=Physo127200;Parent=Physo127200;rank=7 scaffold_1 . exon 818218 818704 . - . ID=Physo127200.7;Parent=Physo127200;constitutive=1;ensembl_phase=2;rank=7 scaffold_1 . CDS 819251 819374 . - 0 ID=Physo127200;Parent=Physo127200;rank=6 scaffold_1 . CDS 819684 820023 . - 0 ID=Physo127200;Parent=Physo127200;rank=5 scaffold_1 . CDS 820068 820171 . - 0 ID=Physo127200;Parent=Physo127200;rank=4 scaffold_1 . CDS 820626 820763 . - 0 ID=Physo127200;Parent=Physo127200;rank=3 scaffold_1 . CDS 820810 820875 . - 0 ID=Physo127200;Parent=Physo127200;rank=2 scaffold_1 . CDS 821383 821668 . - 0 ID=Physo127200;Parent=Physo127200;rank=1 scaffold_1 . repeat_region 822286 822294 . ? . description=dust scaffold_1 . repeat_region 825126 825233 . ? . description=trf scaffold_1 . repeat_region 825148 825235 . ? . description=dust scaffold_1 . repeat_region 825191 825240 . ? . description=trf scaffold_1 . repeat_region 826169 826179 . ? . description=dust scaffold_1 ensembl protein_coding_gene 827879 829552 . + . ID=Physo108143;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10008;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 827879 829552 . + . ID=Physo108143;Parent=Physo108143;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 827879 829084 . + 0 ID=Physo108143;Parent=Physo108143;rank=1 scaffold_1 . exon 827879 829084 . + . ID=Physo108143.1;Parent=Physo108143;constitutive=1;rank=1 scaffold_1 . CDS 829280 829552 . + 0 ID=Physo108143;Parent=Physo108143;rank=2 scaffold_1 . exon 819251 819374 . - . ID=Physo127200.6;Parent=Physo127200;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=6 scaffold_1 . exon 819684 820023 . - . ID=Physo127200.5;Parent=Physo127200;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . exon 820068 820171 . - . ID=Physo127200.4;Parent=Physo127200;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . exon 820626 820763 . - . ID=Physo127200.3;Parent=Physo127200;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . exon 820810 820875 . - . ID=Physo127200.2;Parent=Physo127200;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . exon 821383 821668 . - . ID=Physo127200.1;Parent=Physo127200;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 823450 824595 . - . ID=Physo127201;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10181;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 823450 824595 . - . ID=Physo127201;Parent=Physo127201;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 823450 824289 . - 0 ID=Physo127201;Parent=Physo127201;rank=2 scaffold_1 . exon 823450 824289 . - . ID=Physo127201.2;Parent=Physo127201;constitutive=1;rank=2 scaffold_1 . CDS 824563 824595 . - 0 ID=Physo127201;Parent=Physo127201;rank=1 scaffold_1 . exon 824563 824595 . - . ID=Physo127201.1;Parent=Physo127201;constitutive=1;rank=1 scaffold_1 . biological_region 831193 831200 0.999 + . logic_name=eponine scaffold_1 . biological_region 832632 832633 0.999 + . logic_name=eponine scaffold_1 . biological_region 832661 832665 0.999 - . logic_name=eponine scaffold_1 . exon 829280 829552 . + . ID=Physo108143.2;Parent=Physo108143;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 831686 833436 . + . ID=Physo127203;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10183;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 831686 833436 . + . ID=Physo127203;Parent=Physo127203;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 831686 833365 . + 0 ID=Physo127203;Parent=Physo127203;rank=1 scaffold_1 . exon 831686 833436 . + . ID=Physo127203.1;Parent=Physo127203;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 835688 836431 . - . ID=Physo127204;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10184;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 835688 836431 . - . ID=Physo127204;Parent=Physo127204;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 835688 836431 . - 0 ID=Physo127204;Parent=Physo127204;rank=1 scaffold_1 . exon 835688 836431 . - . ID=Physo127204.1;Parent=Physo127204;constitutive=1;rank=1 scaffold_1 . repeat_region 838866 838957 . ? . description=dust scaffold_1 . repeat_region 838871 838924 . ? . description=trf scaffold_1 . repeat_region 838972 839025 . ? . description=dust scaffold_1 . repeat_region 839349 839371 . ? . description=dust scaffold_1 . repeat_region 839830 839850 . ? . description=trf scaffold_1 . repeat_region 843816 843839 . ? . description=trf scaffold_1 . repeat_region 848443 848485 . ? . description=trf scaffold_1 ensembl protein_coding_gene 839379 842087 . + . ID=Physo127205;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10185;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 839379 842087 . + . ID=Physo127205;Parent=Physo127205;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 839379 839613 . + 0 ID=Physo127205;Parent=Physo127205;rank=1 scaffold_1 . exon 839379 839613 . + . ID=Physo127205.1;Parent=Physo127205;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 840444 841986 . + 0 ID=Physo127205;Parent=Physo127205;rank=2 scaffold_1 . exon 840444 841986 . + . ID=Physo127205.2;Parent=Physo127205;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 842078 842087 . + 0 ID=Physo127205;Parent=Physo127205;rank=3 scaffold_1 . exon 842078 842087 . + . ID=Physo127205.3;Parent=Physo127205;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 ensembl protein_coding_gene 845384 848627 . + . ID=Physo127206;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10186;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 845384 848627 . + . ID=Physo127206;Parent=Physo127206;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 845384 845666 . + 0 ID=Physo127206;Parent=Physo127206;rank=1 scaffold_1 . exon 845384 845666 . + . ID=Physo127206.1;Parent=Physo127206;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 845708 845722 . + 0 ID=Physo127206;Parent=Physo127206;rank=2 scaffold_1 . exon 845708 845722 . + . ID=Physo127206.2;Parent=Physo127206;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 845789 845857 . + 0 ID=Physo127206;Parent=Physo127206;rank=3 scaffold_1 . exon 845789 845857 . + . ID=Physo127206.3;Parent=Physo127206;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 846068 846996 . + 0 ID=Physo127206;Parent=Physo127206;rank=4 scaffold_1 . exon 846068 846996 . + . ID=Physo127206.4;Parent=Physo127206;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 847066 847276 . + 0 ID=Physo127206;Parent=Physo127206;rank=5 scaffold_1 . exon 847066 847276 . + . ID=Physo127206.5;Parent=Physo127206;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 847374 848191 . + 0 ID=Physo127206;Parent=Physo127206;rank=6 scaffold_1 . exon 847374 848191 . + . ID=Physo127206.6;Parent=Physo127206;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 848215 848553 . + 0 ID=Physo127206;Parent=Physo127206;rank=7 scaffold_1 . exon 848215 848553 . + . ID=Physo127206.7;Parent=Physo127206;constitutive=1;rank=7 scaffold_1 . CDS 848604 848627 . + 0 ID=Physo127206;Parent=Physo127206;rank=8 scaffold_1 . exon 848604 848627 . + . ID=Physo127206.8;Parent=Physo127206;constitutive=1;rank=8 scaffold_1 . biological_region 856039 856042 0.999 + . logic_name=eponine scaffold_1 . biological_region 856062 856065 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 849048 852907 . - . ID=Physo127207;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10187;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 849048 852907 . - . ID=Physo127207;Parent=Physo127207;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 849048 849953 . - 0 ID=Physo127207;Parent=Physo127207;rank=6 scaffold_1 . exon 849048 849953 . - . ID=Physo127207.6;Parent=Physo127207;constitutive=1;rank=6 scaffold_1 . CDS 850020 850153 . - 0 ID=Physo127207;Parent=Physo127207;rank=5 scaffold_1 . exon 850020 850153 . - . ID=Physo127207.5;Parent=Physo127207;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 850414 850582 . - 0 ID=Physo127207;Parent=Physo127207;rank=4 scaffold_1 . exon 850414 850582 . - . ID=Physo127207.4;Parent=Physo127207;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 850994 851059 . - 0 ID=Physo127207;Parent=Physo127207;rank=3 scaffold_1 . exon 850994 851059 . - . ID=Physo127207.3;Parent=Physo127207;constitutive=1;rank=3 scaffold_1 . CDS 851240 851319 . - 0 ID=Physo127207;Parent=Physo127207;rank=2 scaffold_1 . exon 851240 851319 . - . ID=Physo127207.2;Parent=Physo127207;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 851458 852907 . - 0 ID=Physo127207;Parent=Physo127207;rank=1 scaffold_1 . exon 851458 852907 . - . ID=Physo127207.1;Parent=Physo127207;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 854257 856278 . - . ID=Physo127208;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10188;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 854257 856278 . - . ID=Physo127208;Parent=Physo127208;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 854257 854383 . - 0 ID=Physo127208;Parent=Physo127208;rank=5 scaffold_1 . exon 854257 854383 . - . ID=Physo127208.5;Parent=Physo127208;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 854517 854800 . - 0 ID=Physo127208;Parent=Physo127208;rank=4 scaffold_1 . exon 854517 854800 . - . ID=Physo127208.4;Parent=Physo127208;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 854960 855047 . - 0 ID=Physo127208;Parent=Physo127208;rank=3 scaffold_1 . exon 854960 855047 . - . ID=Physo127208.3;Parent=Physo127208;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 855075 855640 . - 0 ID=Physo127208;Parent=Physo127208;rank=2 scaffold_1 . exon 855075 855640 . - . ID=Physo127208.2;Parent=Physo127208;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 855793 856278 . - 0 ID=Physo127208;Parent=Physo127208;rank=1 scaffold_1 . exon 855793 856278 . - . ID=Physo127208.1;Parent=Physo127208;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 858787 861531 . + . ID=Physo127209;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10189;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 858787 861531 . + . ID=Physo127209;Parent=Physo127209;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 858787 859659 . + 0 ID=Physo127209;Parent=Physo127209;rank=1 scaffold_1 . exon 858787 859659 . + . ID=Physo127209.1;Parent=Physo127209;constitutive=1;rank=1 scaffold_1 . CDS 859825 861531 . + 0 ID=Physo127209;Parent=Physo127209;rank=2 scaffold_1 . repeat_region 861624 862162 . ? . description=trf scaffold_1 . repeat_region 861624 862562 . ? . description=trf scaffold_1 . repeat_region 862138 862174 . ? . description=trf scaffold_1 . repeat_region 862477 862513 . ? . description=trf scaffold_1 . repeat_region 865815 865838 . ? . description=trf scaffold_1 . repeat_region 865855 865914 . ? . description=dust scaffold_1 . repeat_region 865858 865909 . ? . description=trf scaffold_1 . repeat_region 865865 865911 . ? . description=trf scaffold_1 . repeat_region 865874 865914 . ? . description=trf scaffold_1 . exon 859825 861531 . + . ID=Physo127209.2;Parent=Physo127209;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 863156 864979 . - . ID=Physo127210;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10190;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 863156 864979 . - . ID=Physo127210;Parent=Physo127210;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 863156 863292 . - 0 ID=Physo127210;Parent=Physo127210;rank=7 scaffold_1 . exon 863156 863292 . - . ID=Physo127210.7;Parent=Physo127210;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 863353 863529 . - 0 ID=Physo127210;Parent=Physo127210;rank=6 scaffold_1 . exon 863353 863529 . - . ID=Physo127210.6;Parent=Physo127210;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 863843 863998 . - 0 ID=Physo127210;Parent=Physo127210;rank=5 scaffold_1 . exon 863843 863998 . - . ID=Physo127210.5;Parent=Physo127210;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 864080 864214 . - 0 ID=Physo127210;Parent=Physo127210;rank=4 scaffold_1 . exon 864080 864214 . - . ID=Physo127210.4;Parent=Physo127210;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 864294 864425 . - 0 ID=Physo127210;Parent=Physo127210;rank=3 scaffold_1 . exon 864294 864425 . - . ID=Physo127210.3;Parent=Physo127210;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 864489 864665 . - 0 ID=Physo127210;Parent=Physo127210;rank=2 scaffold_1 . exon 864489 864665 . - . ID=Physo127210.2;Parent=Physo127210;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 864715 864979 . - 0 ID=Physo127210;Parent=Physo127210;rank=1 scaffold_1 . exon 864715 864979 . - . ID=Physo127210.1;Parent=Physo127210;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 865921 867656 . + . ID=Physo127211;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10191;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 865921 867656 . + . ID=Physo127211;Parent=Physo127211;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 865921 866255 . + 0 ID=Physo127211;Parent=Physo127211;rank=1 scaffold_1 . exon 865921 866255 . + . ID=Physo127211.1;Parent=Physo127211;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 866378 867035 . + 0 ID=Physo127211;Parent=Physo127211;rank=2 scaffold_1 . exon 866378 867035 . + . ID=Physo127211.2;Parent=Physo127211;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 867128 867301 . + 0 ID=Physo127211;Parent=Physo127211;rank=3 scaffold_1 . exon 867128 867301 . + . ID=Physo127211.3;Parent=Physo127211;constitutive=1;rank=3 scaffold_1 . CDS 867390 867656 . + 0 ID=Physo127211;Parent=Physo127211;rank=4 scaffold_1 . exon 867390 867656 . + . ID=Physo127211.4;Parent=Physo127211;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 868083 877115 . - . ID=Physo127212;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10192;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 868083 877115 . - . ID=Physo127212;Parent=Physo127212;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 868083 877115 . - 0 ID=Physo127212;Parent=Physo127212;rank=1 scaffold_1 . exon 868083 877115 . - . ID=Physo127212.1;Parent=Physo127212;constitutive=1;rank=1 scaffold_1 . biological_region 868999 869002 0.999 - . logic_name=eponine scaffold_1 . biological_region 876310 876310 0.999 - . logic_name=eponine scaffold_1 . biological_region 877114 877117 0.999 - . logic_name=eponine scaffold_1 . biological_region 877137 877139 0.999 - . logic_name=eponine scaffold_1 . biological_region 877657 877660 0.999 - . logic_name=eponine scaffold_1 . biological_region 877723 877729 0.999 - . logic_name=eponine scaffold_1 . biological_region 878107 878110 0.999 - . logic_name=eponine scaffold_1 . biological_region 878246 878250 0.999 - . logic_name=eponine scaffold_1 . biological_region 878308 878310 0.999 - . logic_name=eponine scaffold_1 . biological_region 878421 878423 0.999 + . logic_name=eponine scaffold_1 . biological_region 878468 878472 0.999 + . logic_name=eponine scaffold_1 . biological_region 878528 878529 0.999 - . logic_name=eponine scaffold_1 . biological_region 878546 878550 0.999 - . logic_name=eponine scaffold_1 . biological_region 878600 878605 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 877444 878868 . + . ID=Physo127213;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10193;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 877444 878868 . + . ID=Physo127213;Parent=Physo127213;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 877444 878868 . + 0 ID=Physo127213;Parent=Physo127213;rank=1 scaffold_1 . exon 877444 878868 . + . ID=Physo127213.1;Parent=Physo127213;constitutive=1;rank=1 scaffold_1 . repeat_region 879926 879952 . ? . description=trf scaffold_1 . repeat_region 883670 883724 . ? . description=trf scaffold_1 ensembl protein_coding_gene 880038 881201 . + . ID=Physo108144;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10009;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 880038 881201 . + . ID=Physo108144;Parent=Physo108144;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 880038 881201 . + 0 ID=Physo108144;Parent=Physo108144;rank=1 scaffold_1 . exon 880038 881201 . + . ID=Physo108144.1;Parent=Physo108144;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 881488 882687 . - . ID=Physo127215;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10195;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 881488 882687 . - . ID=Physo127215;Parent=Physo127215;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 881488 882687 . - 0 ID=Physo127215;Parent=Physo127215;rank=1 scaffold_1 . exon 881488 882687 . - . ID=Physo127215.1;Parent=Physo127215;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 886472 887453 . - . ID=Physo127216;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10196;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 886472 887453 . - . ID=Physo127216;Parent=Physo127216;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 886472 887453 . - . ID=Physo127216.1;Parent=Physo127216;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 886691 887422 . - 0 ID=Physo127216;Parent=Physo127216;rank=1 scaffold_1 ensembl protein_coding_gene 887710 889670 . - . ID=Physo127217;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10197;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 887710 889670 . - . ID=Physo127217;Parent=Physo127217;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 887710 889653 . - 0 ID=Physo127217;Parent=Physo127217;rank=1 scaffold_1 . exon 887710 889670 . - . ID=Physo127217.1;Parent=Physo127217;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . biological_region 888854 888855 0.999 + . logic_name=eponine scaffold_1 . biological_region 889249 889255 0.999 + . logic_name=eponine scaffold_1 . biological_region 889267 889279 0.999 + . logic_name=eponine scaffold_1 . biological_region 889298 889312 0.999 + . logic_name=eponine scaffold_1 . biological_region 889339 889344 0.999 - . logic_name=eponine scaffold_1 . biological_region 889351 889357 0.999 - . logic_name=eponine scaffold_1 . biological_region 889382 889383 0.999 - . logic_name=eponine scaffold_1 . biological_region 889447 889449 0.999 - . logic_name=eponine scaffold_1 . biological_region 889943 889944 0.999 + . logic_name=eponine scaffold_1 . biological_region 890463 890464 0.999 + . logic_name=eponine scaffold_1 . biological_region 890742 890742 0.999 + . logic_name=eponine scaffold_1 . biological_region 896120 896121 0.999 - . logic_name=eponine scaffold_1 . biological_region 896188 896191 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 889694 891551 . + . ID=Physo108145;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10010;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 889694 891551 . + . ID=Physo108145;Parent=Physo108145;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 889694 889763 . + 0 ID=Physo108145;Parent=Physo108145;rank=1 scaffold_1 . exon 889694 889763 . + . ID=Physo108145.1;Parent=Physo108145;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 889934 890128 . + 0 ID=Physo108145;Parent=Physo108145;rank=2 scaffold_1 . exon 889934 890128 . + . ID=Physo108145.2;Parent=Physo108145;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 890201 890277 . + 0 ID=Physo108145;Parent=Physo108145;rank=3 scaffold_1 . exon 890201 890277 . + . ID=Physo108145.3;Parent=Physo108145;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 890363 890421 . + 0 ID=Physo108145;Parent=Physo108145;rank=4 scaffold_1 . exon 890363 890421 . + . ID=Physo108145.4;Parent=Physo108145;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 890559 890609 . + 0 ID=Physo108145;Parent=Physo108145;rank=5 scaffold_1 . exon 890559 890609 . + . ID=Physo108145.5;Parent=Physo108145;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_1 . CDS 890701 890830 . + 0 ID=Physo108145;Parent=Physo108145;rank=6 scaffold_1 . exon 890701 890830 . + . ID=Physo108145.6;Parent=Physo108145;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 890899 891060 . + 0 ID=Physo108145;Parent=Physo108145;rank=7 scaffold_1 . exon 890899 891060 . + . ID=Physo108145.7;Parent=Physo108145;constitutive=1;rank=7 scaffold_1 . CDS 891126 891551 . + 0 ID=Physo108145;Parent=Physo108145;rank=8 scaffold_1 . exon 891126 891551 . + . ID=Physo108145.8;Parent=Physo108145;constitutive=1;rank=8 scaffold_1 ensembl protein_coding_gene 891899 894075 . + . ID=Physo108146;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10011;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 891899 894075 . + . ID=Physo108146;Parent=Physo108146;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 891899 892490 . + 0 ID=Physo108146;Parent=Physo108146;rank=1 scaffold_1 . exon 891899 892490 . + . ID=Physo108146.1;Parent=Physo108146;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 892599 893998 . + 0 ID=Physo108146;Parent=Physo108146;rank=2 scaffold_1 . exon 892599 894075 . + . ID=Physo108146.2;Parent=Physo108146;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 895942 897082 . + . ID=Physo127220;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10200;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 895942 897082 . + . ID=Physo127220;Parent=Physo127220;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 895942 896307 . + 0 ID=Physo127220;Parent=Physo127220;rank=1 scaffold_1 . exon 895942 896307 . + . ID=Physo127220.1;Parent=Physo127220;constitutive=1;rank=1 scaffold_1 . CDS 896445 896528 . + 0 ID=Physo127220;Parent=Physo127220;rank=2 scaffold_1 . exon 896445 896528 . + . ID=Physo127220.2;Parent=Physo127220;constitutive=1;rank=2 scaffold_1 . CDS 896601 896697 . + 0 ID=Physo127220;Parent=Physo127220;rank=3 scaffold_1 . exon 896601 896697 . + . ID=Physo127220.3;Parent=Physo127220;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 896781 897082 . + 0 ID=Physo127220;Parent=Physo127220;rank=4 scaffold_1 . exon 896781 897082 . + . ID=Physo127220.4;Parent=Physo127220;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 897604 898126 . + . ID=Physo127221;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10201;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 897604 898126 . + . ID=Physo127221;Parent=Physo127221;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 897604 898059 . + 0 ID=Physo127221;Parent=Physo127221;rank=1 scaffold_1 . exon 897604 898059 . + . ID=Physo127221.1;Parent=Physo127221;constitutive=1;rank=1 scaffold_1 . CDS 898085 898126 . + 0 ID=Physo127221;Parent=Physo127221;rank=2 scaffold_1 . exon 898085 898126 . + . ID=Physo127221.2;Parent=Physo127221;constitutive=1;rank=2 scaffold_1 . biological_region 909561 909563 0.999 + . logic_name=eponine scaffold_1 . biological_region 909675 909678 0.999 - . logic_name=eponine scaffold_1 . biological_region 910433 910436 0.999 - . logic_name=eponine scaffold_1 . biological_region 910451 910455 0.999 + . logic_name=eponine scaffold_1 . biological_region 910465 910472 0.999 - . logic_name=eponine scaffold_1 . biological_region 910485 910489 0.999 + . logic_name=eponine scaffold_1 . biological_region 910519 910524 0.999 + . logic_name=eponine scaffold_1 . biological_region 910541 910549 0.999 + . logic_name=eponine scaffold_1 . biological_region 910556 910561 0.999 - . logic_name=eponine scaffold_1 . biological_region 910641 910644 0.999 - . logic_name=eponine scaffold_1 . biological_region 915300 915306 0.999 + . logic_name=eponine scaffold_1 . biological_region 916057 916057 0.999 - . logic_name=eponine scaffold_1 . biological_region 918281 918283 0.999 + . logic_name=eponine scaffold_1 . biological_region 918287 918291 0.999 - . logic_name=eponine scaffold_1 . biological_region 918366 918368 0.999 + . logic_name=eponine scaffold_1 . biological_region 918427 918427 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 915560 916281 . - . ID=Physo108147;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10012;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 915560 916281 . - . ID=Physo108147;Parent=Physo108147;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 915560 915919 . - . ID=Physo108147.2;Parent=Physo108147;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1 . CDS 915611 915919 . - 0 ID=Physo108147;Parent=Physo108147;rank=2 scaffold_1 . CDS 916244 916264 . - 0 ID=Physo108147;Parent=Physo108147;rank=1 scaffold_1 . exon 916244 916281 . - . ID=Physo108147.1;Parent=Physo108147;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 909314 910689 . - . ID=Physo127222;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10202;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 909314 910689 . - . ID=Physo127222;Parent=Physo127222;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 909314 909753 . - . ID=Physo127222.4;Parent=Physo127222;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=4 scaffold_1 . CDS 909429 909753 . - 0 ID=Physo127222;Parent=Physo127222;rank=4 scaffold_1 . CDS 909834 909908 . - 0 ID=Physo127222;Parent=Physo127222;rank=3 scaffold_1 . exon 909834 909908 . - . ID=Physo127222.3;Parent=Physo127222;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 909988 910040 . - 0 ID=Physo127222;Parent=Physo127222;rank=2 scaffold_1 . exon 909988 910040 . - . ID=Physo127222.2;Parent=Physo127222;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 910114 910689 . - 0 ID=Physo127222;Parent=Physo127222;rank=1 scaffold_1 . exon 910114 910689 . - . ID=Physo127222.1;Parent=Physo127222;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 914458 915453 . + . ID=Physo127223;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10203;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 914458 915453 . + . ID=Physo127223;Parent=Physo127223;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 914458 914764 . + 0 ID=Physo127223;Parent=Physo127223;rank=1 scaffold_1 . exon 914458 914764 . + . ID=Physo127223.1;Parent=Physo127223;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 914834 914933 . + 0 ID=Physo127223;Parent=Physo127223;rank=2 scaffold_1 . exon 914834 914933 . + . ID=Physo127223.2;Parent=Physo127223;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 915003 915453 . + 0 ID=Physo127223;Parent=Physo127223;rank=3 scaffold_1 . exon 915003 915453 . + . ID=Physo127223.3;Parent=Physo127223;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 ensembl protein_coding_gene 918231 920692 . + . ID=Physo127225;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10205;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 918231 920692 . + . ID=Physo127225;Parent=Physo127225;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 918231 919533 . + 0 ID=Physo127225;Parent=Physo127225;rank=1 scaffold_1 . exon 918231 919533 . + . ID=Physo127225.1;Parent=Physo127225;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 919567 919771 . + 0 ID=Physo127225;Parent=Physo127225;rank=2 scaffold_1 . CDS 919880 920002 . + 0 ID=Physo127225;Parent=Physo127225;rank=3 scaffold_1 . CDS 920070 920266 . + 0 ID=Physo127225;Parent=Physo127225;rank=4 scaffold_1 . CDS 920349 920692 . + 0 ID=Physo127225;Parent=Physo127225;rank=5 scaffold_1 . exon 919567 919771 . + . ID=Physo127225.2;Parent=Physo127225;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . exon 919880 920002 . + . ID=Physo127225.3;Parent=Physo127225;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . exon 920070 920266 . + . ID=Physo127225.4;Parent=Physo127225;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . exon 920349 920692 . + . ID=Physo127225.5;Parent=Physo127225;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 921305 922681 . - . ID=Physo127226;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10206;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 921305 922681 . - . ID=Physo127226;Parent=Physo127226;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 921305 922681 . - 0 ID=Physo127226;Parent=Physo127226;rank=1 scaffold_1 . exon 921305 922681 . - . ID=Physo127226.1;Parent=Physo127226;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 923169 924707 . - . ID=Physo127227;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10207;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 923169 924707 . - . ID=Physo127227;Parent=Physo127227;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 923169 924707 . - 0 ID=Physo127227;Parent=Physo127227;rank=1 scaffold_1 . exon 923169 924707 . - . ID=Physo127227.1;Parent=Physo127227;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 926127 929373 . - . ID=Physo127228;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10208;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 926127 929373 . - . ID=Physo127228;Parent=Physo127228;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 926127 928405 . - 0 ID=Physo127228;Parent=Physo127228;rank=4 scaffold_1 . exon 926127 928405 . - . ID=Physo127228.4;Parent=Physo127228;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 928465 928493 . - 0 ID=Physo127228;Parent=Physo127228;rank=3 scaffold_1 . exon 928465 928493 . - . ID=Physo127228.3;Parent=Physo127228;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 928539 929240 . - 0 ID=Physo127228;Parent=Physo127228;rank=2 scaffold_1 . exon 928539 929240 . - . ID=Physo127228.2;Parent=Physo127228;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 929312 929373 . - 0 ID=Physo127228;Parent=Physo127228;rank=1 scaffold_1 . repeat_region 929616 929636 . ? . description=trf scaffold_1 . biological_region 930504 930510 0.999 - . logic_name=eponine scaffold_1 . biological_region 930583 930585 0.999 - . logic_name=eponine scaffold_1 . biological_region 931135 931139 0.999 + . logic_name=eponine scaffold_1 . biological_region 931267 931270 0.999 + . logic_name=eponine scaffold_1 . biological_region 931471 931475 0.999 - . logic_name=eponine scaffold_1 . biological_region 931685 931686 0.999 - . logic_name=eponine scaffold_1 . biological_region 931911 931914 0.999 - . logic_name=eponine scaffold_1 . biological_region 932431 932432 0.999 + . logic_name=eponine scaffold_1 . biological_region 933069 933071 0.999 + . logic_name=eponine scaffold_1 . biological_region 934587 934590 0.999 - . logic_name=eponine scaffold_1 . biological_region 934914 934918 0.999 - . logic_name=eponine scaffold_1 . repeat_region 935252 935274 . ? . description=trf scaffold_1 . biological_region 935341 935349 0.999 - . logic_name=eponine scaffold_1 . biological_region 935610 935610 0.999 - . logic_name=eponine scaffold_1 . biological_region 936553 936559 0.999 + . logic_name=eponine scaffold_1 . biological_region 938544 938548 0.999 - . logic_name=eponine scaffold_1 . repeat_region 938652 938751 . ? . description=trf scaffold_1 . repeat_region 938652 938751 . ? . description=trf scaffold_1 . repeat_region 938652 938751 . ? . description=trf scaffold_1 . repeat_region 938652 938775 . ? . description=dust scaffold_1 . repeat_region 938652 938778 . ? . description=trf scaffold_1 . repeat_region 938723 938792 . ? . description=trf scaffold_1 ensembl tRNA_gene 938578 938647 . + . ID=EPrPSOG00000000129;biotype=tRNA;description=tRNA-Val for anticodon CAC [Source:TRNASCAN_SE%3BAcc:tRNA-Val];external_name=tRNA-Val;logic_name=ncrna_eg scaffold_1 ensembl transcript 938578 938647 . + . ID=EPrPSOT00000000129;Parent=EPrPSOG00000000129;biotype=tRNA;logic_name=ncrna_eg scaffold_1 . exon 938578 938647 . + . ID=EPrPSOE00000000129;Parent=EPrPSOT00000000129;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 933259 935562 . + . ID=Physo108148;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10013;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 933259 935562 . + . ID=Physo108148;Parent=Physo108148;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 933259 935562 . + 0 ID=Physo108148;Parent=Physo108148;rank=1 scaffold_1 . exon 933259 935562 . + . ID=Physo108148.1;Parent=Physo108148;constitutive=1;rank=1 scaffold_1 . exon 929312 929373 . - . ID=Physo127228.1;Parent=Physo127228;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 930303 931925 . + . ID=Physo127229;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10209;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 930303 931925 . + . ID=Physo127229;Parent=Physo127229;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 930303 931925 . + 0 ID=Physo127229;Parent=Physo127229;rank=1 scaffold_1 . exon 930303 931925 . + . ID=Physo127229.1;Parent=Physo127229;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 936036 936923 . - . ID=Physo127231;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10211;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 936036 936923 . - . ID=Physo127231;Parent=Physo127231;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 936036 936923 . - 0 ID=Physo127231;Parent=Physo127231;rank=1 scaffold_1 . exon 936036 936923 . - . ID=Physo127231.1;Parent=Physo127231;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 944527 945846 . - . ID=Physo127232;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10212;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 944527 945846 . - . ID=Physo127232;Parent=Physo127232;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 944527 945846 . - 0 ID=Physo127232;Parent=Physo127232;rank=1 scaffold_1 . exon 944527 945846 . - . ID=Physo127232.1;Parent=Physo127232;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 948147 949580 . + . ID=Physo127233;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10213;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 948147 949580 . + . ID=Physo127233;Parent=Physo127233;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 948147 949077 . + 0 ID=Physo127233;Parent=Physo127233;rank=1 scaffold_1 . exon 948147 949077 . + . ID=Physo127233.1;Parent=Physo127233;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 949269 949363 . + 0 ID=Physo127233;Parent=Physo127233;rank=2 scaffold_1 . CDS 949425 949580 . + 0 ID=Physo127233;Parent=Physo127233;rank=3 scaffold_1 . biological_region 949195 949198 0.999 + . logic_name=eponine scaffold_1 . biological_region 949209 949213 0.999 + . logic_name=eponine scaffold_1 . biological_region 949262 949267 0.999 + . logic_name=eponine scaffold_1 . repeat_region 949498 949563 . - . description=GypsyPi-1c_I-int scaffold_1 . biological_region 949605 949607 0.999 + . logic_name=eponine scaffold_1 . biological_region 949645 949652 0.999 + . logic_name=eponine scaffold_1 . repeat_region 949884 952792 . - . description=GypsyPi-1c_I-int scaffold_1 . biological_region 952938 952939 0.999 + . logic_name=eponine scaffold_1 . biological_region 953264 953267 0.999 - . logic_name=eponine scaffold_1 . biological_region 953336 953344 0.999 - . logic_name=eponine scaffold_1 . biological_region 953393 953396 0.999 + . logic_name=eponine scaffold_1 . repeat_region 953490 954025 . - . description=GypsyPi-1c_I-int scaffold_1 . biological_region 953792 953793 0.999 - . logic_name=eponine scaffold_1 . biological_region 953807 953812 0.999 + . logic_name=eponine scaffold_1 . biological_region 954313 954313 0.999 + . logic_name=eponine scaffold_1 . repeat_region 954635 954794 . - . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 955850 955858 . ? . description=dust scaffold_1 . biological_region 957347 957351 0.999 - . logic_name=eponine scaffold_1 . exon 949269 949363 . + . ID=Physo127233.2;Parent=Physo127233;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . exon 949425 949580 . + . ID=Physo127233.3;Parent=Physo127233;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 949836 954843 . - . ID=Physo127234;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10214;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 949836 954843 . - . ID=Physo127234;Parent=Physo127234;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 949836 950038 . - 0 ID=Physo127234;Parent=Physo127234;rank=7 scaffold_1 . exon 949836 950038 . - . ID=Physo127234.7;Parent=Physo127234;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 950273 950731 . - 0 ID=Physo127234;Parent=Physo127234;rank=6 scaffold_1 . exon 950273 950731 . - . ID=Physo127234.6;Parent=Physo127234;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 950861 952784 . - 0 ID=Physo127234;Parent=Physo127234;rank=5 scaffold_1 . exon 950861 952784 . - . ID=Physo127234.5;Parent=Physo127234;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 952845 953300 . - 0 ID=Physo127234;Parent=Physo127234;rank=4 scaffold_1 . exon 952845 953300 . - . ID=Physo127234.4;Parent=Physo127234;constitutive=1;rank=4 scaffold_1 . CDS 953333 953492 . - 0 ID=Physo127234;Parent=Physo127234;rank=3 scaffold_1 . exon 953333 953492 . - . ID=Physo127234.3;Parent=Physo127234;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 953625 953745 . - 0 ID=Physo127234;Parent=Physo127234;rank=2 scaffold_1 . exon 953625 953745 . - . ID=Physo127234.2;Parent=Physo127234;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 954162 954843 . - 0 ID=Physo127234;Parent=Physo127234;rank=1 scaffold_1 . exon 954162 954843 . - . ID=Physo127234.1;Parent=Physo127234;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 956856 958202 . + . ID=Physo127235;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10215;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 956856 958202 . + . ID=Physo127235;Parent=Physo127235;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 956856 957718 . + . ID=Physo127235.1;Parent=Physo127235;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 956860 957718 . + 0 ID=Physo127235;Parent=Physo127235;rank=1 scaffold_1 . CDS 957807 957976 . + 0 ID=Physo127235;Parent=Physo127235;rank=2 scaffold_1 . exon 957807 958202 . + . ID=Physo127235.2;Parent=Physo127235;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 958211 960432 . - . ID=Physo127236;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10216;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 958211 960432 . - . ID=Physo127236;Parent=Physo127236;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 958211 960304 . - 0 ID=Physo127236;Parent=Physo127236;rank=2 scaffold_1 . exon 958211 960304 . - . ID=Physo127236.2;Parent=Physo127236;constitutive=1;rank=2 scaffold_1 . CDS 960394 960432 . - 0 ID=Physo127236;Parent=Physo127236;rank=1 scaffold_1 . repeat_region 965077 965253 . + . description=(CAG)n scaffold_1 . exon 960394 960432 . - . ID=Physo127236.1;Parent=Physo127236;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 960492 965764 . - . ID=Physo127237;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10217;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 960492 965764 . - . ID=Physo127237;Parent=Physo127237;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 960492 962124 . - . ID=Physo127237.3;Parent=Physo127237;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1 . CDS 960631 962124 . - 0 ID=Physo127237;Parent=Physo127237;rank=3 scaffold_1 . CDS 962204 964187 . - 0 ID=Physo127237;Parent=Physo127237;rank=2 scaffold_1 . exon 962204 964187 . - . ID=Physo127237.2;Parent=Physo127237;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 964326 965764 . - 0 ID=Physo127237;Parent=Physo127237;rank=1 scaffold_1 . exon 964326 965764 . - . ID=Physo127237.1;Parent=Physo127237;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 966499 966849 . - . ID=Physo127238;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10218;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 966499 966849 . - . ID=Physo127238;Parent=Physo127238;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 966499 966849 . - 0 ID=Physo127238;Parent=Physo127238;rank=1 scaffold_1 . exon 966499 966849 . - . ID=Physo127238.1;Parent=Physo127238;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 967469 968376 . + . ID=Physo127239;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10219;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 967469 968376 . + . ID=Physo127239;Parent=Physo127239;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 967469 968376 . + . ID=Physo127239.1;Parent=Physo127239;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 967514 968131 . + 0 ID=Physo127239;Parent=Physo127239;rank=1 scaffold_1 ensembl protein_coding_gene 968462 969819 . - . ID=Physo127240;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10220;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 968462 969819 . - . ID=Physo127240;Parent=Physo127240;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 968462 968710 . - 0 ID=Physo127240;Parent=Physo127240;rank=5 scaffold_1 . exon 968462 968710 . - . ID=Physo127240.5;Parent=Physo127240;constitutive=1;rank=5 scaffold_1 . CDS 968780 968849 . - 0 ID=Physo127240;Parent=Physo127240;rank=4 scaffold_1 . CDS 968939 969033 . - 0 ID=Physo127240;Parent=Physo127240;rank=3 scaffold_1 . CDS 969100 969579 . - 0 ID=Physo127240;Parent=Physo127240;rank=2 scaffold_1 . CDS 969679 969819 . - 0 ID=Physo127240;Parent=Physo127240;rank=1 scaffold_1 . repeat_region 968894 968906 . ? . description=dust scaffold_1 . biological_region 970021 970026 0.999 - . logic_name=eponine scaffold_1 . biological_region 971301 971302 0.999 - . logic_name=eponine scaffold_1 . biological_region 972870 972873 0.999 - . logic_name=eponine scaffold_1 . biological_region 975223 975225 0.999 + . logic_name=eponine scaffold_1 . repeat_region 976596 976646 . ? . description=trf scaffold_1 . repeat_region 976915 976962 . ? . description=trf scaffold_1 . exon 968780 968849 . - . ID=Physo127240.4;Parent=Physo127240;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . exon 968939 969033 . - . ID=Physo127240.3;Parent=Physo127240;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . exon 969100 969579 . - . ID=Physo127240.2;Parent=Physo127240;constitutive=1;rank=2 scaffold_1 . exon 969679 969819 . - . ID=Physo127240.1;Parent=Physo127240;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 970165 970599 . + . ID=Physo127241;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10221;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 970165 970599 . + . ID=Physo127241;Parent=Physo127241;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 970165 970599 . + 0 ID=Physo127241;Parent=Physo127241;rank=1 scaffold_1 . exon 970165 970599 . + . ID=Physo127241.1;Parent=Physo127241;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 971707 972901 . + . ID=Physo127242;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10222;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 971707 972901 . + . ID=Physo127242;Parent=Physo127242;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 971707 972427 . + 0 ID=Physo127242;Parent=Physo127242;rank=1 scaffold_1 . exon 971707 972427 . + . ID=Physo127242.1;Parent=Physo127242;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 972507 972901 . + 0 ID=Physo127242;Parent=Physo127242;rank=2 scaffold_1 . exon 972507 972901 . + . ID=Physo127242.2;Parent=Physo127242;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 973111 974031 . + . ID=Physo127243;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10223;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 973111 974031 . + . ID=Physo127243;Parent=Physo127243;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 973111 974031 . + 0 ID=Physo127243;Parent=Physo127243;rank=1 scaffold_1 . exon 973111 974031 . + . ID=Physo127243.1;Parent=Physo127243;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 975609 977344 . + . ID=Physo127244;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10224;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 975609 977344 . + . ID=Physo127244;Parent=Physo127244;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 975609 975719 . + 0 ID=Physo127244;Parent=Physo127244;rank=1 scaffold_1 . exon 975609 975719 . + . ID=Physo127244.1;Parent=Physo127244;constitutive=1;rank=1 scaffold_1 . CDS 975746 976606 . + 0 ID=Physo127244;Parent=Physo127244;rank=2 scaffold_1 . exon 975746 976606 . + . ID=Physo127244.2;Parent=Physo127244;constitutive=1;rank=2 scaffold_1 . CDS 976774 976810 . + 0 ID=Physo127244;Parent=Physo127244;rank=3 scaffold_1 . exon 976774 976810 . + . ID=Physo127244.3;Parent=Physo127244;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 976974 977344 . + 0 ID=Physo127244;Parent=Physo127244;rank=4 scaffold_1 . exon 976974 977344 . + . ID=Physo127244.4;Parent=Physo127244;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 979211 980105 . - . ID=Physo127245;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10225;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 979211 980105 . - . ID=Physo127245;Parent=Physo127245;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 979211 979234 . - 0 ID=Physo127245;Parent=Physo127245;rank=4 scaffold_1 . exon 979211 979234 . - . ID=Physo127245.4;Parent=Physo127245;constitutive=1;rank=4 scaffold_1 . CDS 979389 979532 . - 0 ID=Physo127245;Parent=Physo127245;rank=3 scaffold_1 . exon 979389 979532 . - . ID=Physo127245.3;Parent=Physo127245;constitutive=1;rank=3 scaffold_1 . CDS 979592 979987 . - 0 ID=Physo127245;Parent=Physo127245;rank=2 scaffold_1 . exon 979592 979987 . - . ID=Physo127245.2;Parent=Physo127245;constitutive=1;rank=2 scaffold_1 . CDS 980025 980105 . - 0 ID=Physo127245;Parent=Physo127245;rank=1 scaffold_1 . exon 980025 980105 . - . ID=Physo127245.1;Parent=Physo127245;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 980861 982944 . + . ID=Physo127246;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10226;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 980861 982944 . + . ID=Physo127246;Parent=Physo127246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 980861 980950 . + 0 ID=Physo127246;Parent=Physo127246;rank=1 scaffold_1 . exon 980861 980950 . + . ID=Physo127246.1;Parent=Physo127246;constitutive=1;rank=1 scaffold_1 . CDS 981037 982944 . + 0 ID=Physo127246;Parent=Physo127246;rank=2 scaffold_1 . exon 981037 982944 . + . ID=Physo127246.2;Parent=Physo127246;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 983344 999288 . + . ID=Physo127247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10227;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 983344 999288 . + . ID=Physo127247;Parent=Physo127247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 983344 986273 . + 0 ID=Physo127247;Parent=Physo127247;rank=1 scaffold_1 . exon 983344 986273 . + . ID=Physo127247.1;Parent=Physo127247;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 986398 986449 . + 0 ID=Physo127247;Parent=Physo127247;rank=2 scaffold_1 . exon 986398 986449 . + . ID=Physo127247.2;Parent=Physo127247;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 986521 999288 . + 0 ID=Physo127247;Parent=Physo127247;rank=3 scaffold_1 . exon 986521 999288 . + . ID=Physo127247.3;Parent=Physo127247;constitutive=1;rank=3 scaffold_1 . biological_region 990775 990781 0.999 - . logic_name=eponine scaffold_1 . biological_region 990832 990837 0.999 + . logic_name=eponine scaffold_1 . biological_region 997350 997353 0.999 - . logic_name=eponine scaffold_1 . biological_region 998097 998099 0.999 - . logic_name=eponine scaffold_1 . repeat_region 1002635 1002660 . ? . description=trf scaffold_1 . repeat_region 1004196 1004203 . ? . description=dust scaffold_1 . repeat_region 1005706 1005713 . ? . description=dust scaffold_1 . repeat_region 1006391 1006424 . ? . description=trf scaffold_1 ensembl protein_coding_gene 983344 999288 . + . ID=Physo127247;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10227;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 983344 999288 . + . ID=Physo127247;Parent=Physo127247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 983344 986273 . + 0 ID=Physo127247;Parent=Physo127247;rank=1 scaffold_1 . CDS 986398 986449 . + 0 ID=Physo127247;Parent=Physo127247;rank=2 scaffold_1 . CDS 986521 999288 . + 0 ID=Physo127247;Parent=Physo127247;rank=3 scaffold_1 . exon 986521 999288 . + . ID=Physo127247.3;Parent=Physo127247;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 999337 1001373 . - . ID=Physo127248;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10228;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 999337 1001373 . - . ID=Physo127248;Parent=Physo127248;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 999337 1001373 . - 0 ID=Physo127248;Parent=Physo127248;rank=1 scaffold_1 . exon 999337 1001373 . - . ID=Physo127248.1;Parent=Physo127248;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1001570 1002248 . + . ID=Physo127249;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10229;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1001570 1002248 . + . ID=Physo127249;Parent=Physo127249;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1001570 1001924 . + 0 ID=Physo127249;Parent=Physo127249;rank=1 scaffold_1 . exon 1001570 1001924 . + . ID=Physo127249.1;Parent=Physo127249;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1001986 1002144 . + 0 ID=Physo127249;Parent=Physo127249;rank=2 scaffold_1 . exon 1001986 1002144 . + . ID=Physo127249.2;Parent=Physo127249;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1002238 1002248 . + 0 ID=Physo127249;Parent=Physo127249;rank=3 scaffold_1 . exon 1002238 1002248 . + . ID=Physo127249.3;Parent=Physo127249;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 ensembl protein_coding_gene 1002979 1004162 . + . ID=Physo127250;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10230;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1002979 1004162 . + . ID=Physo127250;Parent=Physo127250;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1002979 1003046 . + 0 ID=Physo127250;Parent=Physo127250;rank=1 scaffold_1 . exon 1002979 1003046 . + . ID=Physo127250.1;Parent=Physo127250;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1003124 1004162 . + 0 ID=Physo127250;Parent=Physo127250;rank=2 scaffold_1 . exon 1003124 1004162 . + . ID=Physo127250.2;Parent=Physo127250;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 1004326 1004787 . - . ID=Physo127251;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10231;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1004326 1004787 . - . ID=Physo127251;Parent=Physo127251;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1004326 1004787 . - 0 ID=Physo127251;Parent=Physo127251;rank=1 scaffold_1 . exon 1004326 1004787 . - . ID=Physo127251.1;Parent=Physo127251;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1006598 1008325 . + . ID=Physo127252;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10232;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1006598 1008325 . + . ID=Physo127252;Parent=Physo127252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1006598 1008325 . + 0 ID=Physo127252;Parent=Physo127252;rank=1 scaffold_1 . exon 1006598 1008325 . + . ID=Physo127252.1;Parent=Physo127252;constitutive=1;rank=1 scaffold_1 . biological_region 1009802 1009803 0.999 - . logic_name=eponine scaffold_1 . biological_region 1018369 1018371 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1016589 1017756 . - . ID=Physo127253;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10233;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1016589 1017756 . - . ID=Physo127253;Parent=Physo127253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1016589 1017160 . - 0 ID=Physo127253;Parent=Physo127253;rank=3 scaffold_1 . exon 1016589 1017160 . - . ID=Physo127253.3;Parent=Physo127253;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1017397 1017601 . - 0 ID=Physo127253;Parent=Physo127253;rank=2 scaffold_1 . exon 1017397 1017601 . - . ID=Physo127253.2;Parent=Physo127253;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1017688 1017756 . - 0 ID=Physo127253;Parent=Physo127253;rank=1 scaffold_1 . exon 1017688 1017756 . - . ID=Physo127253.1;Parent=Physo127253;constitutive=1;rank=1 scaffold_1 . repeat_region 1018733 1018827 . ? . description=trf scaffold_1 . repeat_region 1019966 1020015 . ? . description=dust scaffold_1 . repeat_region 1022972 1022994 . ? . description=dust scaffold_1 . repeat_region 1023588 1023682 . ? . description=trf scaffold_1 . repeat_region 1026666 1026705 . ? . description=trf scaffold_1 . repeat_region 1026666 1026705 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1019007 1020163 . + . ID=Physo127254;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10234;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1019007 1020163 . + . ID=Physo127254;Parent=Physo127254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1019007 1019039 . + 0 ID=Physo127254;Parent=Physo127254;rank=1 scaffold_1 . exon 1019007 1019039 . + . ID=Physo127254.1;Parent=Physo127254;constitutive=1;rank=1 scaffold_1 . CDS 1019107 1019367 . + 0 ID=Physo127254;Parent=Physo127254;rank=2 scaffold_1 . exon 1019107 1019367 . + . ID=Physo127254.2;Parent=Physo127254;constitutive=1;rank=2 scaffold_1 . CDS 1019407 1019930 . + 0 ID=Physo127254;Parent=Physo127254;rank=3 scaffold_1 . exon 1019407 1019930 . + . ID=Physo127254.3;Parent=Physo127254;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 1020087 1020105 . + 0 ID=Physo127254;Parent=Physo127254;rank=4 scaffold_1 . exon 1020087 1020105 . + . ID=Physo127254.4;Parent=Physo127254;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1020149 1020163 . + 0 ID=Physo127254;Parent=Physo127254;rank=5 scaffold_1 . exon 1020149 1020163 . + . ID=Physo127254.5;Parent=Physo127254;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 1020939 1022764 . - . ID=Physo127255;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10235;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1020939 1022764 . - . ID=Physo127255;Parent=Physo127255;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1020939 1021629 . - 0 ID=Physo127255;Parent=Physo127255;rank=3 scaffold_1 . exon 1020939 1021629 . - . ID=Physo127255.3;Parent=Physo127255;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1021713 1022418 . - 0 ID=Physo127255;Parent=Physo127255;rank=2 scaffold_1 . exon 1021713 1022418 . - . ID=Physo127255.2;Parent=Physo127255;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 1022494 1022764 . - 0 ID=Physo127255;Parent=Physo127255;rank=1 scaffold_1 . exon 1022494 1022764 . - . ID=Physo127255.1;Parent=Physo127255;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1023862 1028369 . + . ID=Physo127256;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10236;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1023862 1028369 . + . ID=Physo127256;Parent=Physo127256;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1023862 1023894 . + 0 ID=Physo127256;Parent=Physo127256;rank=1 scaffold_1 . exon 1023862 1023894 . + . ID=Physo127256.1;Parent=Physo127256;constitutive=1;rank=1 scaffold_1 . CDS 1023962 1026113 . + 0 ID=Physo127256;Parent=Physo127256;rank=2 scaffold_1 . exon 1023962 1026113 . + . ID=Physo127256.2;Parent=Physo127256;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1026302 1026619 . + 0 ID=Physo127256;Parent=Physo127256;rank=3 scaffold_1 . exon 1026302 1026619 . + . ID=Physo127256.3;Parent=Physo127256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1026725 1027189 . + 0 ID=Physo127256;Parent=Physo127256;rank=4 scaffold_1 . exon 1026725 1027189 . + . ID=Physo127256.4;Parent=Physo127256;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1027309 1028369 . + 0 ID=Physo127256;Parent=Physo127256;rank=5 scaffold_1 . exon 1027309 1028369 . + . ID=Physo127256.5;Parent=Physo127256;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 1028563 1033743 . - . ID=Physo127257;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10237;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1028563 1033743 . - . ID=Physo127257;Parent=Physo127257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1028563 1029278 . - 0 ID=Physo127257;Parent=Physo127257;rank=5 scaffold_1 . exon 1028563 1029278 . - . ID=Physo127257.5;Parent=Physo127257;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 1029370 1029735 . - 0 ID=Physo127257;Parent=Physo127257;rank=4 scaffold_1 . CDS 1029874 1031230 . - 0 ID=Physo127257;Parent=Physo127257;rank=3 scaffold_1 . CDS 1031368 1033237 . - 0 ID=Physo127257;Parent=Physo127257;rank=2 scaffold_1 . CDS 1033733 1033743 . - 0 ID=Physo127257;Parent=Physo127257;rank=1 scaffold_1 . biological_region 1035230 1035234 0.999 - . logic_name=eponine scaffold_1 . biological_region 1035248 1035256 0.999 - . logic_name=eponine scaffold_1 . exon 1029370 1029735 . - . ID=Physo127257.4;Parent=Physo127257;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . exon 1029874 1031230 . - . ID=Physo127257.3;Parent=Physo127257;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . exon 1031368 1033237 . - . ID=Physo127257.2;Parent=Physo127257;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . exon 1033733 1033743 . - . ID=Physo127257.1;Parent=Physo127257;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1034548 1036401 . - . ID=Physo127258;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10238;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1034548 1036401 . - . ID=Physo127258;Parent=Physo127258;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1034548 1035549 . - 0 ID=Physo127258;Parent=Physo127258;rank=2 scaffold_1 . exon 1034548 1035549 . - . ID=Physo127258.2;Parent=Physo127258;constitutive=1;rank=2 scaffold_1 . CDS 1035805 1036401 . - 0 ID=Physo127258;Parent=Physo127258;rank=1 scaffold_1 . exon 1035805 1036401 . - . ID=Physo127258.1;Parent=Physo127258;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1037950 1039597 . - . ID=Physo127259;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10239;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1037950 1039597 . - . ID=Physo127259;Parent=Physo127259;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1037950 1038726 . - 0 ID=Physo127259;Parent=Physo127259;rank=3 scaffold_1 . exon 1037950 1038726 . - . ID=Physo127259.3;Parent=Physo127259;constitutive=1;rank=3 scaffold_1 . CDS 1039019 1039235 . - 0 ID=Physo127259;Parent=Physo127259;rank=2 scaffold_1 . CDS 1039533 1039597 . - 0 ID=Physo127259;Parent=Physo127259;rank=1 scaffold_1 . repeat_region 1047573 1048806 . + . description=Gypsy-2-I_PI-int scaffold_1 . exon 1039019 1039235 . - . ID=Physo127259.2;Parent=Physo127259;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . exon 1039533 1039597 . - . ID=Physo127259.1;Parent=Physo127259;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1043954 1044367 . - . ID=Physo127260;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10240;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1043954 1044367 . - . ID=Physo127260;Parent=Physo127260;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1043954 1044250 . - 0 ID=Physo127260;Parent=Physo127260;rank=2 scaffold_1 . exon 1043954 1044250 . - . ID=Physo127260.2;Parent=Physo127260;constitutive=1;rank=2 scaffold_1 . CDS 1044278 1044367 . - 0 ID=Physo127260;Parent=Physo127260;rank=1 scaffold_1 . exon 1044278 1044367 . - . ID=Physo127260.1;Parent=Physo127260;constitutive=1;rank=1 scaffold_1 . repeat_region 1049833 1049975 . ? . description=dust scaffold_1 . repeat_region 1049985 1050202 . + . description=Gypsy-1-I_PI-int scaffold_1 . repeat_region 1050385 1051163 . + . description=Gypsy-1-I_PI-int scaffold_1 . repeat_region 1051189 1051495 . ? . description=dust scaffold_1 . biological_region 1052190 1052194 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1053405 1053457 . ? . description=dust scaffold_1 . repeat_region 1053406 1053455 . ? . description=trf scaffold_1 . repeat_region 1054442 1054457 . ? . description=dust scaffold_1 . biological_region 1057899 1057901 0.999 + . logic_name=eponine scaffold_1 . biological_region 1057946 1057951 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1057065 1058839 . - . ID=Physo108149;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10014;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1057065 1058839 . - . ID=Physo108149;Parent=Physo108149;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1057065 1057154 . - 0 ID=Physo108149;Parent=Physo108149;rank=6 scaffold_1 . exon 1057065 1057154 . - . ID=Physo108149.6;Parent=Physo108149;constitutive=1;rank=6 scaffold_1 . CDS 1057240 1057330 . - 0 ID=Physo108149;Parent=Physo108149;rank=5 scaffold_1 . exon 1057240 1057330 . - . ID=Physo108149.5;Parent=Physo108149;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 1057408 1057564 . - 0 ID=Physo108149;Parent=Physo108149;rank=4 scaffold_1 . exon 1057408 1057564 . - . ID=Physo108149.4;Parent=Physo108149;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 1057635 1058315 . - 0 ID=Physo108149;Parent=Physo108149;rank=3 scaffold_1 . exon 1057635 1058315 . - . ID=Physo108149.3;Parent=Physo108149;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1058415 1058582 . - 0 ID=Physo108149;Parent=Physo108149;rank=2 scaffold_1 . exon 1058415 1058582 . - . ID=Physo108149.2;Parent=Physo108149;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1058657 1058807 . - 0 ID=Physo108149;Parent=Physo108149;rank=1 scaffold_1 ensembl protein_coding_gene 1052242 1053525 . - . ID=Physo127261;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10241;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1052242 1053525 . - . ID=Physo127261;Parent=Physo127261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1052242 1052982 . - 0 ID=Physo127261;Parent=Physo127261;rank=2 scaffold_1 . exon 1052242 1052982 . - . ID=Physo127261.2;Parent=Physo127261;constitutive=1;rank=2 scaffold_1 . CDS 1053049 1053525 . - 0 ID=Physo127261;Parent=Physo127261;rank=1 scaffold_1 . exon 1053049 1053525 . - . ID=Physo127261.1;Parent=Physo127261;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1054746 1056832 . + . ID=Physo127262;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10242;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1054746 1056832 . + . ID=Physo127262;Parent=Physo127262;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1054746 1054820 . + 0 ID=Physo127262;Parent=Physo127262;rank=1 scaffold_1 . exon 1054746 1054820 . + . ID=Physo127262.1;Parent=Physo127262;constitutive=1;rank=1 scaffold_1 . CDS 1054890 1054976 . + 0 ID=Physo127262;Parent=Physo127262;rank=2 scaffold_1 . exon 1054890 1054976 . + . ID=Physo127262.2;Parent=Physo127262;constitutive=1;rank=2 scaffold_1 . CDS 1055056 1055766 . + 0 ID=Physo127262;Parent=Physo127262;rank=3 scaffold_1 . exon 1055056 1055766 . + . ID=Physo127262.3;Parent=Physo127262;constitutive=1;rank=3 scaffold_1 . CDS 1055840 1055943 . + 0 ID=Physo127262;Parent=Physo127262;rank=4 scaffold_1 . exon 1055840 1055943 . + . ID=Physo127262.4;Parent=Physo127262;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 1056027 1056246 . + 0 ID=Physo127262;Parent=Physo127262;rank=5 scaffold_1 . exon 1056027 1056246 . + . ID=Physo127262.5;Parent=Physo127262;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 1056317 1056613 . + 0 ID=Physo127262;Parent=Physo127262;rank=6 scaffold_1 . exon 1056317 1056613 . + . ID=Physo127262.6;Parent=Physo127262;constitutive=1;rank=6 scaffold_1 . CDS 1056692 1056832 . + 0 ID=Physo127262;Parent=Physo127262;rank=7 scaffold_1 . exon 1056692 1056832 . + . ID=Physo127262.7;Parent=Physo127262;constitutive=1;rank=7 scaffold_1 . exon 1058657 1058839 . - . ID=Physo108149.1;Parent=Physo108149;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1059031 1060053 . + . ID=Physo127265;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10245;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1059031 1060053 . + . ID=Physo127265;Parent=Physo127265;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1059031 1060053 . + 0 ID=Physo127265;Parent=Physo127265;rank=1 scaffold_1 . exon 1059031 1060053 . + . ID=Physo127265.1;Parent=Physo127265;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1060258 1064425 . - . ID=Physo127266;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10246;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1060258 1064425 . - . ID=Physo127266;Parent=Physo127266;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1060258 1061444 . - 0 ID=Physo127266;Parent=Physo127266;rank=6 scaffold_1 . exon 1060258 1061444 . - . ID=Physo127266.6;Parent=Physo127266;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 1061465 1062057 . - 0 ID=Physo127266;Parent=Physo127266;rank=5 scaffold_1 . exon 1061465 1062057 . - . ID=Physo127266.5;Parent=Physo127266;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 1062144 1062816 . - 0 ID=Physo127266;Parent=Physo127266;rank=4 scaffold_1 . exon 1062144 1062816 . - . ID=Physo127266.4;Parent=Physo127266;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=4 scaffold_1 . CDS 1062942 1063788 . - 0 ID=Physo127266;Parent=Physo127266;rank=3 scaffold_1 . exon 1062942 1063788 . - . ID=Physo127266.3;Parent=Physo127266;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 1063815 1064127 . - 0 ID=Physo127266;Parent=Physo127266;rank=2 scaffold_1 . exon 1063815 1064127 . - . ID=Physo127266.2;Parent=Physo127266;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1064169 1064425 . - 0 ID=Physo127266;Parent=Physo127266;rank=1 scaffold_1 . exon 1064169 1064425 . - . ID=Physo127266.1;Parent=Physo127266;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1067294 1067939 . - . ID=Physo127267;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10247;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1067294 1067939 . - . ID=Physo127267;Parent=Physo127267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1067294 1067562 . - 0 ID=Physo127267;Parent=Physo127267;rank=3 scaffold_1 . exon 1067294 1067562 . - . ID=Physo127267.3;Parent=Physo127267;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1067585 1067841 . - 0 ID=Physo127267;Parent=Physo127267;rank=2 scaffold_1 . exon 1067585 1067841 . - . ID=Physo127267.2;Parent=Physo127267;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1067890 1067939 . - 0 ID=Physo127267;Parent=Physo127267;rank=1 scaffold_1 . exon 1067890 1067939 . - . ID=Physo127267.1;Parent=Physo127267;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . biological_region 1069204 1069205 0.999 - . logic_name=eponine scaffold_1 . biological_region 1069939 1069942 0.999 - . logic_name=eponine scaffold_1 . biological_region 1069980 1069982 0.999 - . logic_name=eponine scaffold_1 . biological_region 1070725 1070726 0.999 + . logic_name=eponine scaffold_1 . biological_region 1072783 1072788 0.999 + . logic_name=eponine scaffold_1 . biological_region 1072810 1072814 0.999 + . logic_name=eponine scaffold_1 . biological_region 1074119 1074121 0.999 - . logic_name=eponine scaffold_1 . biological_region 1074288 1074293 0.999 + . logic_name=eponine scaffold_1 . biological_region 1074346 1074347 0.999 - . logic_name=eponine scaffold_1 . biological_region 1074750 1074752 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1069121 1073450 . + . ID=Physo127268;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10248;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1069121 1073450 . + . ID=Physo127268;Parent=Physo127268;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1069121 1071507 . + 0 ID=Physo127268;Parent=Physo127268;rank=1 scaffold_1 . exon 1069121 1071507 . + . ID=Physo127268.1;Parent=Physo127268;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1071571 1072196 . + 0 ID=Physo127268;Parent=Physo127268;rank=2 scaffold_1 . exon 1071571 1072196 . + . ID=Physo127268.2;Parent=Physo127268;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1072217 1073403 . + 0 ID=Physo127268;Parent=Physo127268;rank=3 scaffold_1 . exon 1072217 1073450 . + . ID=Physo127268.3;Parent=Physo127268;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=3 scaffold_1 ensembl protein_coding_gene 1074017 1082922 . + . ID=Physo127269;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10249;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1074017 1082922 . + . ID=Physo127269;Parent=Physo127269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1074017 1075852 . + 0 ID=Physo127269;Parent=Physo127269;rank=1 scaffold_1 . exon 1074017 1075852 . + . ID=Physo127269.1;Parent=Physo127269;constitutive=1;rank=1 scaffold_1 . CDS 1076144 1080001 . + 0 ID=Physo127269;Parent=Physo127269;rank=2 scaffold_1 . exon 1076144 1080001 . + . ID=Physo127269.2;Parent=Physo127269;constitutive=1;rank=2 scaffold_1 . CDS 1080079 1080180 . + 0 ID=Physo127269;Parent=Physo127269;rank=3 scaffold_1 . CDS 1080253 1082922 . + 0 ID=Physo127269;Parent=Physo127269;rank=4 scaffold_1 . repeat_region 1080994 1081013 . ? . description=trf scaffold_1 . exon 1080079 1080180 . + . ID=Physo127269.3;Parent=Physo127269;constitutive=1;rank=3 scaffold_1 . exon 1080253 1082922 . + . ID=Physo127269.4;Parent=Physo127269;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 1083700 1087900 . + . ID=Physo127270;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10250;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1083700 1087900 . + . ID=Physo127270;Parent=Physo127270;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1083700 1087295 . + 0 ID=Physo127270;Parent=Physo127270;rank=1 scaffold_1 . exon 1083700 1087295 . + . ID=Physo127270.1;Parent=Physo127270;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1087318 1087900 . + 0 ID=Physo127270;Parent=Physo127270;rank=2 scaffold_1 . exon 1087318 1087900 . + . ID=Physo127270.2;Parent=Physo127270;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . biological_region 1089049 1089051 0.999 - . logic_name=eponine scaffold_1 . biological_region 1090841 1090847 0.999 + . logic_name=eponine scaffold_1 . biological_region 1092283 1092285 0.999 + . logic_name=eponine scaffold_1 . biological_region 1092316 1092318 0.999 + . logic_name=eponine scaffold_1 . biological_region 1092581 1092583 0.999 + . logic_name=eponine scaffold_1 . biological_region 1092628 1092634 0.999 + . logic_name=eponine scaffold_1 . biological_region 1095778 1095784 0.999 - . logic_name=eponine scaffold_1 . biological_region 1095829 1095832 0.999 - . logic_name=eponine scaffold_1 . biological_region 1096094 1096096 0.999 - . logic_name=eponine scaffold_1 . biological_region 1096127 1096129 0.999 - . logic_name=eponine scaffold_1 . biological_region 1097245 1097246 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1089698 1091436 . - . ID=Physo108150;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10015;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1089698 1091436 . - . ID=Physo108150;Parent=Physo108150;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1089698 1091068 . - 0 ID=Physo108150;Parent=Physo108150;rank=2 scaffold_1 . exon 1089698 1091068 . - . ID=Physo108150.2;Parent=Physo108150;constitutive=1;rank=2 scaffold_1 . CDS 1091185 1091436 . - 0 ID=Physo108150;Parent=Physo108150;rank=1 scaffold_1 . exon 1091185 1091436 . - . ID=Physo108150.1;Parent=Physo108150;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1092081 1093362 . - . ID=Physo108151;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10016;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1092081 1093362 . - . ID=Physo108151;Parent=Physo108151;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1092081 1093310 . - 0 ID=Physo108151;Parent=Physo108151;rank=1 scaffold_1 . exon 1092081 1093362 . - . ID=Physo108151.1;Parent=Physo108151;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1095050 1096330 . + . ID=Physo108152;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10017;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1095050 1096330 . + . ID=Physo108152;Parent=Physo108152;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1095050 1095685 . + . ID=Physo108152.1;Parent=Physo108152;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1095102 1095685 . + 0 ID=Physo108152;Parent=Physo108152;rank=1 scaffold_1 . CDS 1095718 1096330 . + 0 ID=Physo108152;Parent=Physo108152;rank=2 scaffold_1 . exon 1095718 1096330 . + . ID=Physo108152.2;Parent=Physo108152;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 1088706 1089621 . + . ID=Physo127271;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10251;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1088706 1089621 . + . ID=Physo127271;Parent=Physo127271;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1088706 1089039 . + 0 ID=Physo127271;Parent=Physo127271;rank=1 scaffold_1 . exon 1088706 1089039 . + . ID=Physo127271.1;Parent=Physo127271;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1089087 1089619 . + 0 ID=Physo127271;Parent=Physo127271;rank=2 scaffold_1 . exon 1089087 1089621 . + . ID=Physo127271.2;Parent=Physo127271;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 1096665 1098899 . + . ID=Physo127275;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10255;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1096665 1098899 . + . ID=Physo127275;Parent=Physo127275;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1096665 1096750 . + 0 ID=Physo127275;Parent=Physo127275;rank=1 scaffold_1 . exon 1096665 1096750 . + . ID=Physo127275.1;Parent=Physo127275;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1096837 1097522 . + 0 ID=Physo127275;Parent=Physo127275;rank=2 scaffold_1 . exon 1096837 1097522 . + . ID=Physo127275.2;Parent=Physo127275;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1097836 1098899 . + 0 ID=Physo127275;Parent=Physo127275;rank=3 scaffold_1 . exon 1097836 1098899 . + . ID=Physo127275.3;Parent=Physo127275;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . repeat_region 1100933 1100982 . ? . description=dust scaffold_1 . repeat_region 1106626 1106649 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1107805 1108605 . - . ID=Physo109960;biotype=protein_coding;external_name=estExt_Genewise1.C_10198;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1107805 1108605 . - . ID=Physo109960;Parent=Physo109960;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1107805 1108596 . - 0 ID=Physo109960;Parent=Physo109960;rank=1 scaffold_1 . exon 1107805 1108605 . - . ID=Physo109960.1;Parent=Physo109960;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . biological_region 1109382 1109384 0.999 - . logic_name=eponine scaffold_1 . biological_region 1110923 1110926 0.999 + . logic_name=eponine scaffold_1 . biological_region 1111076 1111082 0.999 + . logic_name=eponine scaffold_1 . biological_region 1111098 1111103 0.999 + . logic_name=eponine scaffold_1 . biological_region 1111911 1111912 0.999 + . logic_name=eponine scaffold_1 . biological_region 1116629 1116631 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1111757 1112596 . - . ID=Physo108153;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10018;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1111757 1112596 . - . ID=Physo108153;Parent=Physo108153;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1111757 1112515 . - 0 ID=Physo108153;Parent=Physo108153;rank=1 scaffold_1 . exon 1111757 1112596 . - . ID=Physo108153.1;Parent=Physo108153;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1113426 1114775 . - . ID=Physo127278;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10258;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1113426 1114775 . - . ID=Physo127278;Parent=Physo127278;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1113426 1113506 . - 0 ID=Physo127278;Parent=Physo127278;rank=7 scaffold_1 . exon 1113426 1113506 . - . ID=Physo127278.7;Parent=Physo127278;constitutive=1;rank=7 scaffold_1 . CDS 1113592 1113804 . - 0 ID=Physo127278;Parent=Physo127278;rank=6 scaffold_1 . exon 1113592 1113804 . - . ID=Physo127278.6;Parent=Physo127278;constitutive=1;rank=6 scaffold_1 . CDS 1113873 1113939 . - 0 ID=Physo127278;Parent=Physo127278;rank=5 scaffold_1 . exon 1113873 1113939 . - . ID=Physo127278.5;Parent=Physo127278;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 1114033 1114154 . - 0 ID=Physo127278;Parent=Physo127278;rank=4 scaffold_1 . exon 1114033 1114154 . - . ID=Physo127278.4;Parent=Physo127278;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 1114238 1114354 . - 0 ID=Physo127278;Parent=Physo127278;rank=3 scaffold_1 . exon 1114238 1114354 . - . ID=Physo127278.3;Parent=Physo127278;constitutive=1;rank=3 scaffold_1 . CDS 1114445 1114486 . - 0 ID=Physo127278;Parent=Physo127278;rank=2 scaffold_1 . exon 1114445 1114486 . - . ID=Physo127278.2;Parent=Physo127278;constitutive=1;rank=2 scaffold_1 . CDS 1114563 1114775 . - 0 ID=Physo127278;Parent=Physo127278;rank=1 scaffold_1 . exon 1114563 1114775 . - . ID=Physo127278.1;Parent=Physo127278;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1114986 1115810 . + . ID=Physo127279;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10259;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1114986 1115810 . + . ID=Physo127279;Parent=Physo127279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1114986 1115184 . + 0 ID=Physo127279;Parent=Physo127279;rank=1 scaffold_1 . exon 1114986 1115184 . + . ID=Physo127279.1;Parent=Physo127279;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1115267 1115601 . + 0 ID=Physo127279;Parent=Physo127279;rank=2 scaffold_1 . exon 1115267 1115601 . + . ID=Physo127279.2;Parent=Physo127279;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1115688 1115810 . + 0 ID=Physo127279;Parent=Physo127279;rank=3 scaffold_1 . exon 1115688 1115810 . + . ID=Physo127279.3;Parent=Physo127279;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 1115911 1116794 . - . ID=Physo127280;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10260;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1115911 1116794 . - . ID=Physo127280;Parent=Physo127280;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1115911 1116165 . - 0 ID=Physo127280;Parent=Physo127280;rank=2 scaffold_1 . exon 1115911 1116165 . - . ID=Physo127280.2;Parent=Physo127280;constitutive=1;rank=2 scaffold_1 . CDS 1116237 1116794 . - 0 ID=Physo127280;Parent=Physo127280;rank=1 scaffold_1 . exon 1116237 1116794 . - . ID=Physo127280.1;Parent=Physo127280;constitutive=1;rank=1 scaffold_1 . repeat_region 1123661 1123668 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1119979 1121771 . - . ID=Physo127281;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10261;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1119979 1121771 . - . ID=Physo127281;Parent=Physo127281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1119979 1120015 . - 0 ID=Physo127281;Parent=Physo127281;rank=2 scaffold_1 . exon 1119979 1120015 . - . ID=Physo127281.2;Parent=Physo127281;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1120057 1121771 . - 0 ID=Physo127281;Parent=Physo127281;rank=1 scaffold_1 . exon 1120057 1121771 . - . ID=Physo127281.1;Parent=Physo127281;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1123101 1123613 . + . ID=Physo127282;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10262;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1123101 1123613 . + . ID=Physo127282;Parent=Physo127282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1123101 1123613 . + 0 ID=Physo127282;Parent=Physo127282;rank=1 scaffold_1 . exon 1123101 1123613 . + . ID=Physo127282.1;Parent=Physo127282;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1126677 1131591 . - . ID=Physo155246;biotype=protein_coding;external_name=C_scaffold_1000050;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1126677 1131591 . - . ID=Physo155246;Parent=Physo155246;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1126677 1126750 . - 0 ID=Physo155246;Parent=Physo155246;rank=10 scaffold_1 . exon 1126677 1126750 . - . ID=Physo155246.10;Parent=Physo155246;constitutive=1;ensembl_end_phase=2;rank=10 scaffold_1 . CDS 1126893 1127105 . - 0 ID=Physo155246;Parent=Physo155246;rank=9 scaffold_1 . exon 1126893 1127105 . - . ID=Physo155246.9;Parent=Physo155246;constitutive=1;rank=9 scaffold_1 . CDS 1127174 1127314 . - 0 ID=Physo155246;Parent=Physo155246;rank=8 scaffold_1 . exon 1127174 1127314 . - . ID=Physo155246.8;Parent=Physo155246;constitutive=1;rank=8 scaffold_1 . CDS 1127380 1127484 . - 0 ID=Physo155246;Parent=Physo155246;rank=7 scaffold_1 . exon 1127380 1127484 . - . ID=Physo155246.7;Parent=Physo155246;constitutive=1;rank=7 scaffold_1 . CDS 1127561 1127989 . - 0 ID=Physo155246;Parent=Physo155246;rank=6 scaffold_1 . exon 1127561 1127989 . - . ID=Physo155246.6;Parent=Physo155246;constitutive=1;rank=6 scaffold_1 . CDS 1128060 1128140 . - 0 ID=Physo155246;Parent=Physo155246;rank=5 scaffold_1 . exon 1128060 1128140 . - . ID=Physo155246.5;Parent=Physo155246;constitutive=1;rank=5 scaffold_1 . CDS 1128214 1128284 . - 0 ID=Physo155246;Parent=Physo155246;rank=4 scaffold_1 . exon 1128214 1128284 . - . ID=Physo155246.4;Parent=Physo155246;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1128373 1128478 . - 0 ID=Physo155246;Parent=Physo155246;rank=3 scaffold_1 . exon 1128373 1128478 . - . ID=Physo155246.3;Parent=Physo155246;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 1128680 1129267 . - 0 ID=Physo155246;Parent=Physo155246;rank=2 scaffold_1 . CDS 1129345 1131591 . - 0 ID=Physo155246;Parent=Physo155246;rank=1 scaffold_1 . biological_region 1129823 1129825 0.999 + . logic_name=eponine scaffold_1 . biological_region 1132313 1132318 0.999 + . logic_name=eponine scaffold_1 . biological_region 1132339 1132345 0.999 - . logic_name=eponine scaffold_1 . biological_region 1132443 1132445 0.999 - . logic_name=eponine scaffold_1 . biological_region 1132496 1132507 0.999 + . logic_name=eponine scaffold_1 . biological_region 1132803 1132807 0.999 + . logic_name=eponine scaffold_1 . biological_region 1132841 1132846 0.999 + . logic_name=eponine scaffold_1 . biological_region 1132843 1132844 0.999 - . logic_name=eponine scaffold_1 . biological_region 1132875 1132881 0.999 - . logic_name=eponine scaffold_1 . biological_region 1132936 1132937 0.999 - . logic_name=eponine scaffold_1 . biological_region 1133581 1133582 0.999 + . logic_name=eponine scaffold_1 . biological_region 1133723 1133726 0.999 + . logic_name=eponine scaffold_1 . biological_region 1133758 1133760 0.999 - . logic_name=eponine scaffold_1 . biological_region 1133772 1133772 0.999 - . logic_name=eponine scaffold_1 . biological_region 1134065 1134068 0.999 - . logic_name=eponine scaffold_1 . biological_region 1134089 1134092 0.999 + . logic_name=eponine scaffold_1 . biological_region 1134144 1134145 0.999 - . logic_name=eponine scaffold_1 . biological_region 1134184 1134187 0.999 + . logic_name=eponine scaffold_1 . biological_region 1134222 1134226 0.999 + . logic_name=eponine scaffold_1 . biological_region 1134250 1134250 0.999 - . logic_name=eponine scaffold_1 . biological_region 1134318 1134323 0.999 - . logic_name=eponine scaffold_1 . biological_region 1134577 1134579 0.999 + . logic_name=eponine scaffold_1 . biological_region 1135181 1135187 0.999 - . logic_name=eponine scaffold_1 . biological_region 1136083 1136084 0.999 - . logic_name=eponine scaffold_1 . biological_region 1137352 1137354 0.999 - . logic_name=eponine scaffold_1 . biological_region 1137389 1137391 0.999 - . logic_name=eponine scaffold_1 . biological_region 1138222 1138223 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1133552 1134700 . - . ID=Physo108155;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10020;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1133552 1134700 . - . ID=Physo108155;Parent=Physo108155;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1133552 1134700 . - 0 ID=Physo108155;Parent=Physo108155;rank=1 scaffold_1 . exon 1133552 1134700 . - . ID=Physo108155.1;Parent=Physo108155;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1135352 1136230 . + . ID=Physo127288;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10268;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1135352 1136230 . + . ID=Physo127288;Parent=Physo127288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1135352 1135390 . + 0 ID=Physo127288;Parent=Physo127288;rank=1 scaffold_1 . exon 1135352 1135390 . + . ID=Physo127288.1;Parent=Physo127288;constitutive=1;rank=1 scaffold_1 . CDS 1135423 1135664 . + 0 ID=Physo127288;Parent=Physo127288;rank=2 scaffold_1 . exon 1135423 1135664 . + . ID=Physo127288.2;Parent=Physo127288;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 1135744 1135816 . + 0 ID=Physo127288;Parent=Physo127288;rank=3 scaffold_1 . exon 1135744 1135816 . + . ID=Physo127288.3;Parent=Physo127288;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1135881 1136082 . + 0 ID=Physo127288;Parent=Physo127288;rank=4 scaffold_1 . exon 1135881 1136082 . + . ID=Physo127288.4;Parent=Physo127288;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 1136148 1136230 . + 0 ID=Physo127288;Parent=Physo127288;rank=5 scaffold_1 . exon 1136148 1136230 . + . ID=Physo127288.5;Parent=Physo127288;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 1136470 1138528 . - . ID=Physo127289;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10269;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1136470 1138528 . - . ID=Physo127289;Parent=Physo127289;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1136470 1136512 . - 0 ID=Physo127289;Parent=Physo127289;rank=3 scaffold_1 . exon 1136470 1136512 . - . ID=Physo127289.3;Parent=Physo127289;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1136551 1137609 . - 0 ID=Physo127289;Parent=Physo127289;rank=2 scaffold_1 . exon 1136551 1137609 . - . ID=Physo127289.2;Parent=Physo127289;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 1137687 1138528 . - 0 ID=Physo127289;Parent=Physo127289;rank=1 scaffold_1 . exon 1137687 1138528 . - . ID=Physo127289.1;Parent=Physo127289;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . exon 1128680 1129267 . - . ID=Physo155246.2;Parent=Physo155246;constitutive=1;rank=2 scaffold_1 . exon 1129345 1131591 . - . ID=Physo155246.1;Parent=Physo155246;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1132171 1133316 . - . ID=Physo155247;biotype=protein_coding;external_name=C_scaffold_1000051;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1132171 1133316 . - . ID=Physo155247;Parent=Physo155247;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1132171 1133316 . - 0 ID=Physo155247;Parent=Physo155247;rank=1 scaffold_1 . exon 1132171 1133316 . - . ID=Physo155247.1;Parent=Physo155247;constitutive=1;rank=1 scaffold_1 . repeat_region 1139782 1139813 . ? . description=trf scaffold_1 . repeat_region 1141255 1141272 . ? . description=dust scaffold_1 . repeat_region 1141950 1142001 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1139496 1140801 . + . ID=Physo127290;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10270;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1139496 1140801 . + . ID=Physo127290;Parent=Physo127290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1139496 1139549 . + . ID=Physo127290.1;Parent=Physo127290;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1139514 1139549 . + 0 ID=Physo127290;Parent=Physo127290;rank=1 scaffold_1 . CDS 1139630 1139690 . + 0 ID=Physo127290;Parent=Physo127290;rank=2 scaffold_1 . exon 1139630 1139690 . + . ID=Physo127290.2;Parent=Physo127290;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1139771 1139969 . + 0 ID=Physo127290;Parent=Physo127290;rank=3 scaffold_1 . exon 1139771 1139969 . + . ID=Physo127290.3;Parent=Physo127290;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 1140034 1140230 . + 0 ID=Physo127290;Parent=Physo127290;rank=4 scaffold_1 . exon 1140034 1140230 . + . ID=Physo127290.4;Parent=Physo127290;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1140302 1140801 . + 0 ID=Physo127290;Parent=Physo127290;rank=5 scaffold_1 . exon 1140302 1140801 . + . ID=Physo127290.5;Parent=Physo127290;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 1141879 1146935 . + . ID=Physo127291;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10271;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1141879 1146935 . + . ID=Physo127291;Parent=Physo127291;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1141879 1144244 . + 0 ID=Physo127291;Parent=Physo127291;rank=1 scaffold_1 . exon 1141879 1144244 . + . ID=Physo127291.1;Parent=Physo127291;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1144445 1144553 . + 0 ID=Physo127291;Parent=Physo127291;rank=2 scaffold_1 . exon 1144445 1144553 . + . ID=Physo127291.2;Parent=Physo127291;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1144618 1144916 . + 0 ID=Physo127291;Parent=Physo127291;rank=3 scaffold_1 . exon 1144618 1144916 . + . ID=Physo127291.3;Parent=Physo127291;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 1144994 1145087 . + 0 ID=Physo127291;Parent=Physo127291;rank=4 scaffold_1 . exon 1144994 1145087 . + . ID=Physo127291.4;Parent=Physo127291;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1145173 1146210 . + 0 ID=Physo127291;Parent=Physo127291;rank=5 scaffold_1 . exon 1145173 1146210 . + . ID=Physo127291.5;Parent=Physo127291;constitutive=1;rank=5 scaffold_1 . CDS 1146290 1146469 . + 0 ID=Physo127291;Parent=Physo127291;rank=6 scaffold_1 . exon 1146290 1146469 . + . ID=Physo127291.6;Parent=Physo127291;constitutive=1;rank=6 scaffold_1 . CDS 1146555 1146935 . + 0 ID=Physo127291;Parent=Physo127291;rank=7 scaffold_1 . exon 1146555 1146935 . + . ID=Physo127291.7;Parent=Physo127291;constitutive=1;rank=7 scaffold_1 ensembl protein_coding_gene 1147028 1148475 . - . ID=Physo127292;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10272;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1147028 1148475 . - . ID=Physo127292;Parent=Physo127292;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1147028 1147057 . - 0 ID=Physo127292;Parent=Physo127292;rank=3 scaffold_1 . exon 1147028 1147057 . - . ID=Physo127292.3;Parent=Physo127292;constitutive=1;rank=3 scaffold_1 . CDS 1147143 1148361 . - 0 ID=Physo127292;Parent=Physo127292;rank=2 scaffold_1 . exon 1147143 1148361 . - . ID=Physo127292.2;Parent=Physo127292;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1148450 1148475 . - 0 ID=Physo127292;Parent=Physo127292;rank=1 scaffold_1 . exon 1148450 1148475 . - . ID=Physo127292.1;Parent=Physo127292;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . biological_region 1151456 1151460 0.999 + . logic_name=eponine scaffold_1 . biological_region 1151540 1151542 0.999 - . logic_name=eponine scaffold_1 . biological_region 1151596 1151596 0.999 + . logic_name=eponine scaffold_1 . biological_region 1151606 1151611 0.999 - . logic_name=eponine scaffold_1 . biological_region 1151650 1151651 0.999 + . logic_name=eponine scaffold_1 . biological_region 1151660 1151663 0.999 + . logic_name=eponine scaffold_1 . biological_region 1151729 1151732 0.999 + . logic_name=eponine scaffold_1 . biological_region 1151785 1151785 0.999 - . logic_name=eponine scaffold_1 . biological_region 1152222 1152224 0.999 - . logic_name=eponine scaffold_1 . biological_region 1156486 1156491 0.999 + . logic_name=eponine scaffold_1 . biological_region 1156498 1156502 0.999 - . logic_name=eponine scaffold_1 . biological_region 1156553 1156553 0.999 + . logic_name=eponine scaffold_1 . biological_region 1156629 1156635 0.999 - . logic_name=eponine scaffold_1 . biological_region 1157424 1157426 0.999 + . logic_name=eponine scaffold_1 . biological_region 1157560 1157565 0.999 - . logic_name=eponine scaffold_1 . biological_region 1157611 1157615 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1149428 1151807 . - . ID=Physo108156;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10021;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1149428 1151807 . - . ID=Physo108156;Parent=Physo108156;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1149428 1149463 . - 0 ID=Physo108156;Parent=Physo108156;rank=5 scaffold_1 . exon 1149428 1149463 . - . ID=Physo108156.5;Parent=Physo108156;constitutive=1;rank=5 scaffold_1 . CDS 1149617 1149620 . - 0 ID=Physo108156;Parent=Physo108156;rank=4 scaffold_1 . exon 1149617 1149620 . - . ID=Physo108156.4;Parent=Physo108156;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1150075 1150830 . - 0 ID=Physo108156;Parent=Physo108156;rank=3 scaffold_1 . exon 1150075 1150830 . - . ID=Physo108156.3;Parent=Physo108156;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . CDS 1150909 1151009 . - 0 ID=Physo108156;Parent=Physo108156;rank=2 scaffold_1 . exon 1150909 1151009 . - . ID=Physo108156.2;Parent=Physo108156;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 1151100 1151807 . - 0 ID=Physo108156;Parent=Physo108156;rank=1 scaffold_1 . exon 1151100 1151807 . - . ID=Physo108156.1;Parent=Physo108156;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1151965 1152558 . + . ID=Physo127294;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10274;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1151965 1152558 . + . ID=Physo127294;Parent=Physo127294;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1151965 1152558 . + 0 ID=Physo127294;Parent=Physo127294;rank=1 scaffold_1 . exon 1151965 1152558 . + . ID=Physo127294.1;Parent=Physo127294;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1152695 1153592 . - . ID=Physo127295;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10275;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1152695 1153592 . - . ID=Physo127295;Parent=Physo127295;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1152695 1152726 . - 0 ID=Physo127295;Parent=Physo127295;rank=6 scaffold_1 . exon 1152695 1152726 . - . ID=Physo127295.6;Parent=Physo127295;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 1152795 1152872 . - 0 ID=Physo127295;Parent=Physo127295;rank=5 scaffold_1 . exon 1152795 1152872 . - . ID=Physo127295.5;Parent=Physo127295;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 1152937 1152970 . - 0 ID=Physo127295;Parent=Physo127295;rank=4 scaffold_1 . exon 1152937 1152970 . - . ID=Physo127295.4;Parent=Physo127295;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 1153038 1153085 . - 0 ID=Physo127295;Parent=Physo127295;rank=3 scaffold_1 . exon 1153038 1153085 . - . ID=Physo127295.3;Parent=Physo127295;constitutive=1;rank=3 scaffold_1 . CDS 1153157 1153267 . - 0 ID=Physo127295;Parent=Physo127295;rank=2 scaffold_1 . exon 1153157 1153267 . - . ID=Physo127295.2;Parent=Physo127295;constitutive=1;rank=2 scaffold_1 . CDS 1153344 1153592 . - 0 ID=Physo127295;Parent=Physo127295;rank=1 scaffold_1 . exon 1153344 1153592 . - . ID=Physo127295.1;Parent=Physo127295;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1153929 1155584 . + . ID=Physo127296;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10276;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1153929 1155584 . + . ID=Physo127296;Parent=Physo127296;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1153929 1155086 . + 0 ID=Physo127296;Parent=Physo127296;rank=1 scaffold_1 . exon 1153929 1155086 . + . ID=Physo127296.1;Parent=Physo127296;constitutive=1;rank=1 scaffold_1 . CDS 1155215 1155261 . + 0 ID=Physo127296;Parent=Physo127296;rank=2 scaffold_1 . exon 1155215 1155261 . + . ID=Physo127296.2;Parent=Physo127296;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 1155356 1155401 . + 0 ID=Physo127296;Parent=Physo127296;rank=3 scaffold_1 . exon 1155356 1155401 . + . ID=Physo127296.3;Parent=Physo127296;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1155468 1155584 . + 0 ID=Physo127296;Parent=Physo127296;rank=4 scaffold_1 . exon 1155468 1155584 . + . ID=Physo127296.4;Parent=Physo127296;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 1157345 1159851 . + . ID=Physo127297;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10277;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1157345 1159851 . + . ID=Physo127297;Parent=Physo127297;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1157345 1159714 . + 0 ID=Physo127297;Parent=Physo127297;rank=1 scaffold_1 . exon 1157345 1159851 . + . ID=Physo127297.1;Parent=Physo127297;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . repeat_region 1165393 1165401 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1160265 1162555 . - . ID=Physo127298;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10278;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1160265 1162555 . - . ID=Physo127298;Parent=Physo127298;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1160265 1160267 . - 0 ID=Physo127298;Parent=Physo127298;rank=5 scaffold_1 . exon 1160265 1160267 . - . ID=Physo127298.5;Parent=Physo127298;constitutive=1;rank=5 scaffold_1 . CDS 1160329 1162033 . - 0 ID=Physo127298;Parent=Physo127298;rank=4 scaffold_1 . exon 1160329 1162033 . - . ID=Physo127298.4;Parent=Physo127298;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1162098 1162165 . - 0 ID=Physo127298;Parent=Physo127298;rank=3 scaffold_1 . exon 1162098 1162165 . - . ID=Physo127298.3;Parent=Physo127298;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 1162263 1162319 . - 0 ID=Physo127298;Parent=Physo127298;rank=2 scaffold_1 . exon 1162263 1162319 . - . ID=Physo127298.2;Parent=Physo127298;constitutive=1;rank=2 scaffold_1 . CDS 1162499 1162555 . - 0 ID=Physo127298;Parent=Physo127298;rank=1 scaffold_1 . exon 1162499 1162555 . - . ID=Physo127298.1;Parent=Physo127298;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1165419 1165799 . + . ID=Physo127300;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10280;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1165419 1165799 . + . ID=Physo127300;Parent=Physo127300;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1165419 1165799 . + 0 ID=Physo127300;Parent=Physo127300;rank=1 scaffold_1 . exon 1165419 1165799 . + . ID=Physo127300.1;Parent=Physo127300;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1166684 1167064 . + . ID=Physo127301;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10281;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1166684 1167064 . + . ID=Physo127301;Parent=Physo127301;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1166684 1167064 . + 0 ID=Physo127301;Parent=Physo127301;rank=1 scaffold_1 . exon 1166684 1167064 . + . ID=Physo127301.1;Parent=Physo127301;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1168023 1168892 . + . ID=Physo127302;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10282;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1168023 1168892 . + . ID=Physo127302;Parent=Physo127302;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1168023 1168892 . + 0 ID=Physo127302;Parent=Physo127302;rank=1 scaffold_1 . exon 1168023 1168892 . + . ID=Physo127302.1;Parent=Physo127302;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1162740 1165166 . + . ID=Physo155252;biotype=protein_coding;external_name=C_scaffold_1000056;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1162740 1165166 . + . ID=Physo155252;Parent=Physo155252;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1162740 1163043 . + 0 ID=Physo155252;Parent=Physo155252;rank=1 scaffold_1 . exon 1162740 1163043 . + . ID=Physo155252.1;Parent=Physo155252;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1163120 1163257 . + 0 ID=Physo155252;Parent=Physo155252;rank=2 scaffold_1 . exon 1163120 1163257 . + . ID=Physo155252.2;Parent=Physo155252;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1163357 1163623 . + 0 ID=Physo155252;Parent=Physo155252;rank=3 scaffold_1 . exon 1163357 1163623 . + . ID=Physo155252.3;Parent=Physo155252;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1163804 1164442 . + 0 ID=Physo155252;Parent=Physo155252;rank=4 scaffold_1 . exon 1163804 1164442 . + . ID=Physo155252.4;Parent=Physo155252;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1164482 1164586 . + 0 ID=Physo155252;Parent=Physo155252;rank=5 scaffold_1 . exon 1164482 1164586 . + . ID=Physo155252.5;Parent=Physo155252;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 1164820 1165166 . + 0 ID=Physo155252;Parent=Physo155252;rank=6 scaffold_1 . exon 1164820 1165166 . + . ID=Physo155252.6;Parent=Physo155252;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . biological_region 1169956 1169958 0.999 + . logic_name=eponine scaffold_1 . biological_region 1170018 1170021 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1170318 1170348 . ? . description=trf scaffold_1 . biological_region 1172763 1172771 0.999 + . logic_name=eponine scaffold_1 . biological_region 1172785 1172789 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1172828 1172886 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1171176 1172927 . + . ID=Physo127303;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10283;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1171176 1172927 . + . ID=Physo127303;Parent=Physo127303;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1171176 1172927 . + 0 ID=Physo127303;Parent=Physo127303;rank=1 scaffold_1 . exon 1171176 1172927 . + . ID=Physo127303.1;Parent=Physo127303;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1174826 1179610 . + . ID=Physo127304;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10284;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1174826 1179610 . + . ID=Physo127304;Parent=Physo127304;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1174826 1175402 . + 0 ID=Physo127304;Parent=Physo127304;rank=1 scaffold_1 . exon 1174826 1175402 . + . ID=Physo127304.1;Parent=Physo127304;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1175456 1178245 . + 0 ID=Physo127304;Parent=Physo127304;rank=2 scaffold_1 . exon 1175456 1178245 . + . ID=Physo127304.2;Parent=Physo127304;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1178384 1179094 . + 0 ID=Physo127304;Parent=Physo127304;rank=3 scaffold_1 . exon 1178384 1179094 . + . ID=Physo127304.3;Parent=Physo127304;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1179270 1179610 . + 0 ID=Physo127304;Parent=Physo127304;rank=4 scaffold_1 . repeat_region 1181437 1181500 . ? . description=dust scaffold_1 . repeat_region 1186551 1186558 . ? . description=dust scaffold_1 . exon 1179270 1179610 . + . ID=Physo127304.4;Parent=Physo127304;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 1180744 1184305 . - . ID=Physo127305;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10285;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1180744 1184305 . - . ID=Physo127305;Parent=Physo127305;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1180744 1184181 . - 0 ID=Physo127305;Parent=Physo127305;rank=2 scaffold_1 . exon 1180744 1184181 . - . ID=Physo127305.2;Parent=Physo127305;constitutive=1;rank=2 scaffold_1 . CDS 1184273 1184305 . - 0 ID=Physo127305;Parent=Physo127305;rank=1 scaffold_1 . exon 1184273 1184305 . - . ID=Physo127305.1;Parent=Physo127305;constitutive=1;rank=1 scaffold_1 . biological_region 1188613 1188613 0.999 + . logic_name=eponine scaffold_1 . biological_region 1189312 1189316 0.999 - . logic_name=eponine scaffold_1 . repeat_region 1189596 1189731 . ? . description=trf scaffold_1 ensembl tRNA_gene 1194083 1194155 . + . ID=EPrPSOG00000000032;biotype=tRNA;description=tRNA-Arg for anticodon UCG [Source:TRNASCAN_SE%3BAcc:tRNA-Arg];external_name=tRNA-Arg;logic_name=ncrna_eg scaffold_1 ensembl transcript 1194083 1194155 . + . ID=EPrPSOT00000000032;Parent=EPrPSOG00000000032;biotype=tRNA;logic_name=ncrna_eg scaffold_1 . exon 1194083 1194155 . + . ID=EPrPSOE00000000032;Parent=EPrPSOT00000000032;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1192472 1193482 . + . ID=Physo127306;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10286;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1192472 1193482 . + . ID=Physo127306;Parent=Physo127306;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1192472 1193482 . + 0 ID=Physo127306;Parent=Physo127306;rank=1 scaffold_1 . exon 1192472 1193482 . + . ID=Physo127306.1;Parent=Physo127306;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1194860 1195705 . + . ID=Physo127307;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10287;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1194860 1195705 . + . ID=Physo127307;Parent=Physo127307;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1194860 1195705 . + 0 ID=Physo127307;Parent=Physo127307;rank=1 scaffold_1 . exon 1194860 1195705 . + . ID=Physo127307.1;Parent=Physo127307;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1196339 1197204 . + . ID=Physo127308;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10288;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1196339 1197204 . + . ID=Physo127308;Parent=Physo127308;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1196339 1196432 . + 0 ID=Physo127308;Parent=Physo127308;rank=1 scaffold_1 . exon 1196339 1196432 . + . ID=Physo127308.1;Parent=Physo127308;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1196471 1197204 . + 0 ID=Physo127308;Parent=Physo127308;rank=2 scaffold_1 . exon 1196471 1197204 . + . ID=Physo127308.2;Parent=Physo127308;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 1198181 1199021 . + . ID=Physo127309;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10289;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1198181 1199021 . + . ID=Physo127309;Parent=Physo127309;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1198181 1198480 . + 0 ID=Physo127309;Parent=Physo127309;rank=1 scaffold_1 . exon 1198181 1198480 . + . ID=Physo127309.1;Parent=Physo127309;constitutive=1;rank=1 scaffold_1 . CDS 1198505 1198720 . + 0 ID=Physo127309;Parent=Physo127309;rank=2 scaffold_1 . CDS 1198746 1199021 . + 0 ID=Physo127309;Parent=Physo127309;rank=3 scaffold_1 . repeat_region 1199659 1199666 . ? . description=dust scaffold_1 . repeat_region 1199971 1199979 . ? . description=dust scaffold_1 . repeat_region 1200404 1200428 . ? . description=dust scaffold_1 . repeat_region 1200971 1200978 . ? . description=dust scaffold_1 . repeat_region 1201945 1201953 . ? . description=dust scaffold_1 . exon 1198505 1198720 . + . ID=Physo127309.2;Parent=Physo127309;constitutive=1;rank=2 scaffold_1 . exon 1198746 1199021 . + . ID=Physo127309.3;Parent=Physo127309;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 1202574 1203671 . + . ID=Physo127310;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10290;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1202574 1203671 . + . ID=Physo127310;Parent=Physo127310;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1202574 1203671 . + 0 ID=Physo127310;Parent=Physo127310;rank=1 scaffold_1 . exon 1202574 1203671 . + . ID=Physo127310.1;Parent=Physo127310;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1203806 1214148 . - . ID=Physo127311;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10291;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1203806 1214148 . - . ID=Physo127311;Parent=Physo127311;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1203806 1204930 . - 0 ID=Physo127311;Parent=Physo127311;rank=8 scaffold_1 . exon 1203806 1204930 . - . ID=Physo127311.8;Parent=Physo127311;constitutive=1;rank=8 scaffold_1 . CDS 1205131 1205727 . - 0 ID=Physo127311;Parent=Physo127311;rank=7 scaffold_1 . exon 1205131 1205727 . - . ID=Physo127311.7;Parent=Physo127311;constitutive=1;rank=7 scaffold_1 . CDS 1205785 1211848 . - 0 ID=Physo127311;Parent=Physo127311;rank=6 scaffold_1 . exon 1205785 1211848 . - . ID=Physo127311.6;Parent=Physo127311;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 1211955 1212033 . - 0 ID=Physo127311;Parent=Physo127311;rank=5 scaffold_1 . CDS 1212240 1212545 . - 0 ID=Physo127311;Parent=Physo127311;rank=4 scaffold_1 . CDS 1212921 1213286 . - 0 ID=Physo127311;Parent=Physo127311;rank=3 scaffold_1 . CDS 1213307 1213764 . - 0 ID=Physo127311;Parent=Physo127311;rank=2 scaffold_1 . CDS 1213880 1214148 . - 0 ID=Physo127311;Parent=Physo127311;rank=1 scaffold_1 . biological_region 1209762 1209764 0.999 - . logic_name=eponine scaffold_1 . biological_region 1209816 1209820 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1212879 1213654 . ? . description=trf scaffold_1 . biological_region 1214222 1214223 0.999 + . logic_name=eponine scaffold_1 . biological_region 1217904 1217907 0.999 + . logic_name=eponine scaffold_1 . exon 1211955 1212033 . - . ID=Physo127311.5;Parent=Physo127311;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1 . exon 1212240 1212545 . - . ID=Physo127311.4;Parent=Physo127311;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . exon 1212921 1213286 . - . ID=Physo127311.3;Parent=Physo127311;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . exon 1213307 1213764 . - . ID=Physo127311.2;Parent=Physo127311;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . exon 1213880 1214148 . - . ID=Physo127311.1;Parent=Physo127311;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1217132 1218299 . - . ID=Physo127312;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10292;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1217132 1218299 . - . ID=Physo127312;Parent=Physo127312;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1217132 1218190 . - 0 ID=Physo127312;Parent=Physo127312;rank=1 scaffold_1 . exon 1217132 1218299 . - . ID=Physo127312.1;Parent=Physo127312;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1218389 1221930 . + . ID=Physo127313;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10293;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1218389 1221930 . + . ID=Physo127313;Parent=Physo127313;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1218389 1220917 . + 0 ID=Physo127313;Parent=Physo127313;rank=1 scaffold_1 . exon 1218389 1220917 . + . ID=Physo127313.1;Parent=Physo127313;constitutive=1;rank=1 scaffold_1 . CDS 1220991 1221110 . + 0 ID=Physo127313;Parent=Physo127313;rank=2 scaffold_1 . CDS 1221186 1221415 . + 0 ID=Physo127313;Parent=Physo127313;rank=3 scaffold_1 . CDS 1221492 1221621 . + 0 ID=Physo127313;Parent=Physo127313;rank=4 scaffold_1 . CDS 1221697 1221930 . + 0 ID=Physo127313;Parent=Physo127313;rank=5 scaffold_1 . repeat_region 1221436 1221451 . ? . description=dust scaffold_1 . exon 1220991 1221110 . + . ID=Physo127313.2;Parent=Physo127313;constitutive=1;rank=2 scaffold_1 . exon 1221186 1221415 . + . ID=Physo127313.3;Parent=Physo127313;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . exon 1221492 1221621 . + . ID=Physo127313.4;Parent=Physo127313;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . exon 1221697 1221930 . + . ID=Physo127313.5;Parent=Physo127313;constitutive=1;rank=5 scaffold_1 ensembl protein_coding_gene 1226443 1231053 . + . ID=Physo155253;biotype=protein_coding;external_name=C_scaffold_1000057;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1226443 1231053 . + . ID=Physo155253;Parent=Physo155253;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1226443 1226637 . + 0 ID=Physo155253;Parent=Physo155253;rank=1 scaffold_1 . exon 1226443 1226637 . + . ID=Physo155253.1;Parent=Physo155253;constitutive=1;rank=1 scaffold_1 . CDS 1226680 1227057 . + 0 ID=Physo155253;Parent=Physo155253;rank=2 scaffold_1 . exon 1226680 1227057 . + . ID=Physo155253.2;Parent=Physo155253;constitutive=1;rank=2 scaffold_1 . CDS 1227082 1228195 . + 0 ID=Physo155253;Parent=Physo155253;rank=3 scaffold_1 . exon 1227082 1228195 . + . ID=Physo155253.3;Parent=Physo155253;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 1228344 1228739 . + 0 ID=Physo155253;Parent=Physo155253;rank=4 scaffold_1 . exon 1228344 1228739 . + . ID=Physo155253.4;Parent=Physo155253;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1228833 1229229 . + 0 ID=Physo155253;Parent=Physo155253;rank=5 scaffold_1 . CDS 1229302 1229548 . + 0 ID=Physo155253;Parent=Physo155253;rank=6 scaffold_1 . CDS 1229932 1230040 . + 0 ID=Physo155253;Parent=Physo155253;rank=7 scaffold_1 . CDS 1230062 1230285 . + 0 ID=Physo155253;Parent=Physo155253;rank=8 scaffold_1 . CDS 1230433 1230637 . + 0 ID=Physo155253;Parent=Physo155253;rank=9 scaffold_1 . CDS 1230698 1231053 . + 0 ID=Physo155253;Parent=Physo155253;rank=10 scaffold_1 . biological_region 1228425 1228427 0.999 + . logic_name=eponine scaffold_1 . biological_region 1228440 1228441 0.999 - . logic_name=eponine scaffold_1 . biological_region 1228527 1228530 0.999 + . logic_name=eponine scaffold_1 . biological_region 1228586 1228592 0.999 - . logic_name=eponine scaffold_1 . biological_region 1228628 1228632 0.999 - . logic_name=eponine scaffold_1 . biological_region 1228645 1228646 0.999 + . logic_name=eponine scaffold_1 . biological_region 1230812 1230818 0.999 + . logic_name=eponine scaffold_1 . biological_region 1231945 1231946 0.999 + . logic_name=eponine scaffold_1 . biological_region 1233490 1233494 0.999 - . logic_name=eponine scaffold_1 . biological_region 1233612 1233615 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1234036 1234065 . ? . description=trf scaffold_1 . biological_region 1234167 1234168 0.999 - . logic_name=eponine scaffold_1 . biological_region 1234172 1234179 0.999 - . logic_name=eponine scaffold_1 . biological_region 1234527 1234529 0.999 - . logic_name=eponine scaffold_1 . biological_region 1236551 1236553 0.999 - . logic_name=eponine scaffold_1 . biological_region 1236582 1236587 0.999 - . logic_name=eponine scaffold_1 . biological_region 1236612 1236615 0.999 - . logic_name=eponine scaffold_1 . repeat_region 1236946 1236971 . ? . description=trf scaffold_1 . biological_region 1236949 1236952 0.999 + . logic_name=eponine scaffold_1 . biological_region 1236967 1236970 0.999 + . logic_name=eponine scaffold_1 . biological_region 1237099 1237101 0.999 + . logic_name=eponine scaffold_1 . biological_region 1237768 1237773 0.999 + . logic_name=eponine scaffold_1 . biological_region 1237801 1237807 0.999 + . logic_name=eponine scaffold_1 . biological_region 1237820 1237823 0.999 - . logic_name=eponine scaffold_1 . biological_region 1237823 1237827 0.999 + . logic_name=eponine scaffold_1 . biological_region 1237876 1237877 0.999 - . logic_name=eponine scaffold_1 . biological_region 1237925 1237928 0.999 - . logic_name=eponine scaffold_1 . biological_region 1238117 1238118 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1234037 1235386 . + . ID=Physo127317;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10297;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1234037 1235386 . + . ID=Physo127317;Parent=Physo127317;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1234037 1234653 . + . ID=Physo127317.1;Parent=Physo127317;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1234065 1234653 . + 0 ID=Physo127317;Parent=Physo127317;rank=1 scaffold_1 . CDS 1234729 1234955 . + 0 ID=Physo127317;Parent=Physo127317;rank=2 scaffold_1 . exon 1234729 1234955 . + . ID=Physo127317.2;Parent=Physo127317;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1235027 1235386 . + 0 ID=Physo127317;Parent=Physo127317;rank=3 scaffold_1 . exon 1235027 1235386 . + . ID=Physo127317.3;Parent=Physo127317;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 1236971 1238352 . + . ID=Physo127318;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10298;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1236971 1238352 . + . ID=Physo127318;Parent=Physo127318;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1236971 1238089 . + 0 ID=Physo127318;Parent=Physo127318;rank=1 scaffold_1 . exon 1236971 1238352 . + . ID=Physo127318.1;Parent=Physo127318;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . exon 1228833 1229229 . + . ID=Physo155253.5;Parent=Physo155253;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=5 scaffold_1 . exon 1229302 1229548 . + . ID=Physo155253.6;Parent=Physo155253;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . exon 1229932 1230040 . + . ID=Physo155253.7;Parent=Physo155253;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . exon 1230062 1230285 . + . ID=Physo155253.8;Parent=Physo155253;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . exon 1230433 1230637 . + . ID=Physo155253.9;Parent=Physo155253;constitutive=1;ensembl_end_phase=1;rank=9 scaffold_1 . exon 1230698 1231053 . + . ID=Physo155253.10;Parent=Physo155253;constitutive=1;ensembl_phase=1;rank=10 scaffold_1 ensembl protein_coding_gene 1231869 1232818 . + . ID=Physo155254;biotype=protein_coding;external_name=C_scaffold_1000058;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1231869 1232818 . + . ID=Physo155254;Parent=Physo155254;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1231869 1232364 . + 0 ID=Physo155254;Parent=Physo155254;rank=1 scaffold_1 . exon 1231869 1232364 . + . ID=Physo155254.1;Parent=Physo155254;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1232438 1232548 . + 0 ID=Physo155254;Parent=Physo155254;rank=2 scaffold_1 . exon 1232438 1232548 . + . ID=Physo155254.2;Parent=Physo155254;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1232637 1232818 . + 0 ID=Physo155254;Parent=Physo155254;rank=3 scaffold_1 . exon 1232637 1232818 . + . ID=Physo155254.3;Parent=Physo155254;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . repeat_region 1241314 1241321 . ? . description=dust scaffold_1 . repeat_region 1244135 1245712 . ? . description=dust scaffold_1 . repeat_region 1247241 1247290 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1238481 1239473 . + . ID=Physo127319;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10299;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1238481 1239473 . + . ID=Physo127319;Parent=Physo127319;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1238481 1238599 . + 0 ID=Physo127319;Parent=Physo127319;rank=1 scaffold_1 . exon 1238481 1238599 . + . ID=Physo127319.1;Parent=Physo127319;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1238792 1238848 . + 0 ID=Physo127319;Parent=Physo127319;rank=2 scaffold_1 . exon 1238792 1238848 . + . ID=Physo127319.2;Parent=Physo127319;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 1238940 1239009 . + 0 ID=Physo127319;Parent=Physo127319;rank=3 scaffold_1 . exon 1238940 1239009 . + . ID=Physo127319.3;Parent=Physo127319;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1239103 1239206 . + 0 ID=Physo127319;Parent=Physo127319;rank=4 scaffold_1 . exon 1239103 1239206 . + . ID=Physo127319.4;Parent=Physo127319;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 1239329 1239473 . + 0 ID=Physo127319;Parent=Physo127319;rank=5 scaffold_1 . exon 1239329 1239473 . + . ID=Physo127319.5;Parent=Physo127319;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 ensembl protein_coding_gene 1247618 1248518 . - . ID=Physo127320;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10300;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1247618 1248518 . - . ID=Physo127320;Parent=Physo127320;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1247618 1248203 . - 0 ID=Physo127320;Parent=Physo127320;rank=2 scaffold_1 . exon 1247618 1248203 . - . ID=Physo127320.2;Parent=Physo127320;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1248259 1248518 . - 0 ID=Physo127320;Parent=Physo127320;rank=1 scaffold_1 . exon 1248259 1248518 . - . ID=Physo127320.1;Parent=Physo127320;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . biological_region 1251549 1251554 0.999 + . logic_name=eponine scaffold_1 . biological_region 1252224 1252228 0.999 + . logic_name=eponine scaffold_1 . biological_region 1252255 1252256 0.999 - . logic_name=eponine scaffold_1 . biological_region 1252256 1252257 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1253534 1253594 . ? . description=trf scaffold_1 . biological_region 1253634 1253637 0.999 - . logic_name=eponine scaffold_1 . biological_region 1253685 1253689 0.999 - . logic_name=eponine scaffold_1 . biological_region 1253867 1253871 0.999 + . logic_name=eponine scaffold_1 . biological_region 1254761 1254763 0.999 - . logic_name=eponine scaffold_1 . biological_region 1254825 1254826 0.999 - . logic_name=eponine scaffold_1 . biological_region 1255214 1255217 0.999 - . logic_name=eponine scaffold_1 . biological_region 1257308 1257312 0.999 + . logic_name=eponine scaffold_1 . biological_region 1257715 1257718 0.999 - . logic_name=eponine scaffold_1 . biological_region 1257732 1257735 0.999 - . logic_name=eponine scaffold_1 . biological_region 1258239 1258240 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1251816 1255418 . - . ID=Physo127321;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10301;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1251816 1255418 . - . ID=Physo127321;Parent=Physo127321;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1251816 1253620 . - 0 ID=Physo127321;Parent=Physo127321;rank=3 scaffold_1 . exon 1251816 1253620 . - . ID=Physo127321.3;Parent=Physo127321;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1253741 1254035 . - 0 ID=Physo127321;Parent=Physo127321;rank=2 scaffold_1 . exon 1253741 1254035 . - . ID=Physo127321.2;Parent=Physo127321;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1254228 1255418 . - 0 ID=Physo127321;Parent=Physo127321;rank=1 scaffold_1 . exon 1254228 1255418 . - . ID=Physo127321.1;Parent=Physo127321;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1258004 1259385 . - . ID=Physo127322;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10302;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1258004 1259385 . - . ID=Physo127322;Parent=Physo127322;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1258004 1259385 . - . ID=Physo127322.1;Parent=Physo127322;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 1258267 1259385 . - 0 ID=Physo127322;Parent=Physo127322;rank=1 scaffold_1 . repeat_region 1262483 1262737 . ? . description=dust scaffold_1 . repeat_region 1265139 1265188 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1266484 1267446 . + . ID=Physo127323;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10303;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1266484 1267446 . + . ID=Physo127323;Parent=Physo127323;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1266484 1267446 . + 0 ID=Physo127323;Parent=Physo127323;rank=1 scaffold_1 . exon 1266484 1267446 . + . ID=Physo127323.1;Parent=Physo127323;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1269155 1269742 . + . ID=Physo109999;biotype=protein_coding;external_name=estExt_Genewise1.C_10237;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1269155 1269742 . + . ID=Physo109999;Parent=Physo109999;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1269155 1269742 . + . ID=Physo109999.1;Parent=Physo109999;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1269326 1269742 . + 0 ID=Physo109999;Parent=Physo109999;rank=1 scaffold_1 ensembl protein_coding_gene 1270022 1270348 . + . ID=Physo127324;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10304;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1270022 1270348 . + . ID=Physo127324;Parent=Physo127324;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1270022 1270348 . + 0 ID=Physo127324;Parent=Physo127324;rank=1 scaffold_1 . exon 1270022 1270348 . + . ID=Physo127324.1;Parent=Physo127324;constitutive=1;rank=1 scaffold_1 . biological_region 1279227 1279233 0.999 + . logic_name=eponine scaffold_1 . biological_region 1279255 1279260 0.999 + . logic_name=eponine scaffold_1 . biological_region 1279296 1279300 0.999 + . logic_name=eponine scaffold_1 . biological_region 1279362 1279364 0.999 + . logic_name=eponine scaffold_1 . biological_region 1279368 1279369 0.999 - . logic_name=eponine scaffold_1 . biological_region 1279379 1279382 0.999 + . logic_name=eponine scaffold_1 . biological_region 1279476 1279483 0.999 + . logic_name=eponine scaffold_1 . biological_region 1279602 1279604 0.999 + . logic_name=eponine scaffold_1 . biological_region 1279645 1279646 0.999 - . logic_name=eponine scaffold_1 . biological_region 1279980 1279984 0.999 - . logic_name=eponine scaffold_1 . biological_region 1281613 1281616 0.999 + . logic_name=eponine scaffold_1 . biological_region 1281625 1281625 0.999 - . logic_name=eponine scaffold_1 . biological_region 1281766 1281768 0.999 - . logic_name=eponine scaffold_1 . biological_region 1282054 1282057 0.999 + . logic_name=eponine scaffold_1 . biological_region 1282356 1282357 0.999 + . logic_name=eponine scaffold_1 . biological_region 1284166 1284168 0.999 - . logic_name=eponine scaffold_1 . biological_region 1284685 1284687 0.999 + . logic_name=eponine scaffold_1 . biological_region 1285910 1285910 0.999 + . logic_name=eponine scaffold_1 ensembl tRNA_gene 1278768 1278848 . + . ID=EPrPSOG00000000238;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_1 ensembl transcript 1278768 1278848 . + . ID=EPrPSOT00000000238;Parent=EPrPSOG00000000238;biotype=tRNA;logic_name=ncrna_eg scaffold_1 . exon 1278768 1278848 . + . ID=EPrPSOE00000000238;Parent=EPrPSOT00000000238;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1279109 1281484 . - . ID=Physo127325;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10305;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1279109 1281484 . - . ID=Physo127325;Parent=Physo127325;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1279109 1281484 . - . ID=Physo127325.1;Parent=Physo127325;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 1279229 1281484 . - 0 ID=Physo127325;Parent=Physo127325;rank=1 scaffold_1 ensembl protein_coding_gene 1283027 1288726 . - . ID=Physo155257;biotype=protein_coding;external_name=C_scaffold_1000061;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1283027 1288726 . - . ID=Physo155257;Parent=Physo155257;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1283027 1283180 . - 0 ID=Physo155257;Parent=Physo155257;rank=12 scaffold_1 . exon 1283027 1283180 . - . ID=Physo155257.12;Parent=Physo155257;constitutive=1;ensembl_phase=2;rank=12 scaffold_1 . CDS 1283213 1283365 . - 0 ID=Physo155257;Parent=Physo155257;rank=11 scaffold_1 . exon 1283213 1283365 . - . ID=Physo155257.11;Parent=Physo155257;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=11 scaffold_1 . CDS 1283718 1284825 . - 0 ID=Physo155257;Parent=Physo155257;rank=10 scaffold_1 . exon 1283718 1284825 . - . ID=Physo155257.10;Parent=Physo155257;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=10 scaffold_1 . CDS 1284853 1285325 . - 0 ID=Physo155257;Parent=Physo155257;rank=9 scaffold_1 . exon 1284853 1285325 . - . ID=Physo155257.9;Parent=Physo155257;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=9 scaffold_1 . CDS 1285365 1285878 . - 0 ID=Physo155257;Parent=Physo155257;rank=8 scaffold_1 . exon 1285365 1285878 . - . ID=Physo155257.8;Parent=Physo155257;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=8 scaffold_1 . CDS 1286026 1286483 . - 0 ID=Physo155257;Parent=Physo155257;rank=7 scaffold_1 . exon 1286026 1286483 . - . ID=Physo155257.7;Parent=Physo155257;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=7 scaffold_1 . CDS 1286552 1286610 . - 0 ID=Physo155257;Parent=Physo155257;rank=6 scaffold_1 . exon 1286552 1286610 . - . ID=Physo155257.6;Parent=Physo155257;constitutive=1;ensembl_end_phase=2;rank=6 scaffold_1 . CDS 1286669 1287113 . - 0 ID=Physo155257;Parent=Physo155257;rank=5 scaffold_1 . exon 1286669 1287113 . - . ID=Physo155257.5;Parent=Physo155257;constitutive=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 1287180 1287514 . - 0 ID=Physo155257;Parent=Physo155257;rank=4 scaffold_1 . exon 1287180 1287514 . - . ID=Physo155257.4;Parent=Physo155257;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 1287593 1287662 . - 0 ID=Physo155257;Parent=Physo155257;rank=3 scaffold_1 . exon 1287593 1287662 . - . ID=Physo155257.3;Parent=Physo155257;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1287684 1288047 . - 0 ID=Physo155257;Parent=Physo155257;rank=2 scaffold_1 . exon 1287684 1288047 . - . ID=Physo155257.2;Parent=Physo155257;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 1288237 1288726 . - 0 ID=Physo155257;Parent=Physo155257;rank=1 scaffold_1 . exon 1288237 1288726 . - . ID=Physo155257.1;Parent=Physo155257;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . repeat_region 1295660 1295684 . ? . description=trf scaffold_1 . repeat_region 1298124 1298152 . ? . description=dust scaffold_1 . repeat_region 1298124 1298152 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1290052 1298859 . - . ID=Physo127327;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10307;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1290052 1298859 . - . ID=Physo127327;Parent=Physo127327;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1290052 1290072 . - 0 ID=Physo127327;Parent=Physo127327;rank=5 scaffold_1 . exon 1290052 1290072 . - . ID=Physo127327.5;Parent=Physo127327;constitutive=1;rank=5 scaffold_1 . CDS 1290101 1292217 . - 0 ID=Physo127327;Parent=Physo127327;rank=4 scaffold_1 . exon 1290101 1292217 . - . ID=Physo127327.4;Parent=Physo127327;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1292695 1295050 . - 0 ID=Physo127327;Parent=Physo127327;rank=3 scaffold_1 . exon 1292695 1295050 . - . ID=Physo127327.3;Parent=Physo127327;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 1295365 1296672 . - 0 ID=Physo127327;Parent=Physo127327;rank=2 scaffold_1 . exon 1295365 1296672 . - . ID=Physo127327.2;Parent=Physo127327;constitutive=1;rank=2 scaffold_1 . CDS 1296721 1298859 . - 0 ID=Physo127327;Parent=Physo127327;rank=1 scaffold_1 . exon 1296721 1298859 . - . ID=Physo127327.1;Parent=Physo127327;constitutive=1;rank=1 scaffold_1 . biological_region 1298376 1298381 0.999 + . logic_name=eponine scaffold_1 . biological_region 1298569 1298570 0.999 + . logic_name=eponine scaffold_1 . biological_region 1298649 1298652 0.999 + . logic_name=eponine scaffold_1 . biological_region 1298722 1298723 0.999 + . logic_name=eponine scaffold_1 . biological_region 1298744 1298750 0.999 - . logic_name=eponine scaffold_1 . biological_region 1298769 1298776 0.999 - . logic_name=eponine scaffold_1 . biological_region 1298800 1298806 0.999 + . logic_name=eponine scaffold_1 . biological_region 1298824 1298833 0.999 + . logic_name=eponine scaffold_1 . biological_region 1298831 1298835 0.999 - . logic_name=eponine scaffold_1 . biological_region 1299020 1299024 0.999 + . logic_name=eponine scaffold_1 . biological_region 1299097 1299101 0.999 + . logic_name=eponine scaffold_1 . biological_region 1299221 1299227 0.999 + . logic_name=eponine scaffold_1 . biological_region 1301893 1301898 0.999 - . logic_name=eponine scaffold_1 . biological_region 1301948 1301953 0.999 + . logic_name=eponine scaffold_1 . biological_region 1301976 1301982 0.999 - . logic_name=eponine scaffold_1 . biological_region 1302031 1302038 0.999 + . logic_name=eponine scaffold_1 . biological_region 1302213 1302214 0.999 - . logic_name=eponine scaffold_1 . biological_region 1302254 1302259 0.999 - . logic_name=eponine scaffold_1 . biological_region 1302848 1302851 0.999 + . logic_name=eponine scaffold_1 . biological_region 1303383 1303384 0.999 + . logic_name=eponine scaffold_1 . biological_region 1304807 1304810 0.999 + . logic_name=eponine scaffold_1 . biological_region 1305407 1305414 0.999 - . logic_name=eponine scaffold_1 . biological_region 1305462 1305467 0.999 - . logic_name=eponine scaffold_1 . biological_region 1305463 1305469 0.999 + . logic_name=eponine scaffold_1 . biological_region 1305889 1305892 0.999 - . logic_name=eponine scaffold_1 . biological_region 1306177 1306178 0.999 - . logic_name=eponine scaffold_1 . biological_region 1306797 1306797 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1299296 1300761 . + . ID=Physo127328;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10308;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1299296 1300761 . + . ID=Physo127328;Parent=Physo127328;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1299296 1299375 . + 0 ID=Physo127328;Parent=Physo127328;rank=1 scaffold_1 . exon 1299296 1299375 . + . ID=Physo127328.1;Parent=Physo127328;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1299460 1299529 . + 0 ID=Physo127328;Parent=Physo127328;rank=2 scaffold_1 . exon 1299460 1299529 . + . ID=Physo127328.2;Parent=Physo127328;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1299607 1299773 . + 0 ID=Physo127328;Parent=Physo127328;rank=3 scaffold_1 . exon 1299607 1299773 . + . ID=Physo127328.3;Parent=Physo127328;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 1299846 1299954 . + 0 ID=Physo127328;Parent=Physo127328;rank=4 scaffold_1 . exon 1299846 1299954 . + . ID=Physo127328.4;Parent=Physo127328;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1300033 1300262 . + 0 ID=Physo127328;Parent=Physo127328;rank=5 scaffold_1 . exon 1300033 1300262 . + . ID=Physo127328.5;Parent=Physo127328;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . CDS 1300342 1300447 . + 0 ID=Physo127328;Parent=Physo127328;rank=6 scaffold_1 . exon 1300342 1300447 . + . ID=Physo127328.6;Parent=Physo127328;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 1300532 1300566 . + 0 ID=Physo127328;Parent=Physo127328;rank=7 scaffold_1 . exon 1300532 1300566 . + . ID=Physo127328.7;Parent=Physo127328;constitutive=1;ensembl_end_phase=2;rank=7 scaffold_1 . CDS 1300650 1300761 . + 0 ID=Physo127328;Parent=Physo127328;rank=8 scaffold_1 . exon 1300650 1300761 . + . ID=Physo127328.8;Parent=Physo127328;constitutive=1;ensembl_phase=2;rank=8 scaffold_1 ensembl protein_coding_gene 1302475 1304200 . + . ID=Physo127329;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10309;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1302475 1304200 . + . ID=Physo127329;Parent=Physo127329;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1302475 1302625 . + 0 ID=Physo127329;Parent=Physo127329;rank=1 scaffold_1 . exon 1302475 1302625 . + . ID=Physo127329.1;Parent=Physo127329;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1302714 1304200 . + 0 ID=Physo127329;Parent=Physo127329;rank=2 scaffold_1 . exon 1302714 1304200 . + . ID=Physo127329.2;Parent=Physo127329;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 1304368 1304774 . - . ID=Physo127330;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10310;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1304368 1304774 . - . ID=Physo127330;Parent=Physo127330;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1304368 1304675 . - 0 ID=Physo127330;Parent=Physo127330;rank=2 scaffold_1 . exon 1304368 1304675 . - . ID=Physo127330.2;Parent=Physo127330;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1304735 1304774 . - 0 ID=Physo127330;Parent=Physo127330;rank=1 scaffold_1 . exon 1304735 1304774 . - . ID=Physo127330.1;Parent=Physo127330;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1305072 1308962 . + . ID=Physo155261;biotype=protein_coding;external_name=C_scaffold_1000065;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1305072 1308962 . + . ID=Physo155261;Parent=Physo155261;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1305072 1305182 . + 0 ID=Physo155261;Parent=Physo155261;rank=1 scaffold_1 . exon 1305072 1305182 . + . ID=Physo155261.1;Parent=Physo155261;constitutive=1;rank=1 scaffold_1 . CDS 1305234 1305326 . + 0 ID=Physo155261;Parent=Physo155261;rank=2 scaffold_1 . exon 1305234 1305326 . + . ID=Physo155261.2;Parent=Physo155261;constitutive=1;rank=2 scaffold_1 . CDS 1305698 1306326 . + 0 ID=Physo155261;Parent=Physo155261;rank=3 scaffold_1 . exon 1305698 1306326 . + . ID=Physo155261.3;Parent=Physo155261;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 1306386 1306479 . + 0 ID=Physo155261;Parent=Physo155261;rank=4 scaffold_1 . exon 1306386 1306479 . + . ID=Physo155261.4;Parent=Physo155261;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1306556 1307393 . + 0 ID=Physo155261;Parent=Physo155261;rank=5 scaffold_1 . exon 1306556 1307393 . + . ID=Physo155261.5;Parent=Physo155261;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 1307430 1307690 . + 0 ID=Physo155261;Parent=Physo155261;rank=6 scaffold_1 . exon 1307430 1307690 . + . ID=Physo155261.6;Parent=Physo155261;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 1307780 1307831 . + 0 ID=Physo155261;Parent=Physo155261;rank=7 scaffold_1 . exon 1307780 1307831 . + . ID=Physo155261.7;Parent=Physo155261;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=7 scaffold_1 . CDS 1308040 1308162 . + 0 ID=Physo155261;Parent=Physo155261;rank=8 scaffold_1 . exon 1308040 1308162 . + . ID=Physo155261.8;Parent=Physo155261;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=8 scaffold_1 . CDS 1308247 1308858 . + 0 ID=Physo155261;Parent=Physo155261;rank=9 scaffold_1 . exon 1308247 1308858 . + . ID=Physo155261.9;Parent=Physo155261;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=9 scaffold_1 . CDS 1308932 1308962 . + 0 ID=Physo155261;Parent=Physo155261;rank=10 scaffold_1 . repeat_region 1318081 1318113 . ? . description=dust scaffold_1 . repeat_region 1318081 1318113 . ? . description=trf scaffold_1 ensembl tRNA_gene 1311597 1311677 . + . ID=EPrPSOG00000000170;biotype=tRNA;description=tRNA-Ser for anticodon CGA [Source:TRNASCAN_SE%3BAcc:tRNA-Ser];external_name=tRNA-Ser;logic_name=ncrna_eg scaffold_1 ensembl transcript 1311597 1311677 . + . ID=EPrPSOT00000000170;Parent=EPrPSOG00000000170;biotype=tRNA;logic_name=ncrna_eg scaffold_1 . exon 1311597 1311677 . + . ID=EPrPSOE00000000170;Parent=EPrPSOT00000000170;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1309598 1310735 . - . ID=Physo108157;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10022;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1309598 1310735 . - . ID=Physo108157;Parent=Physo108157;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1309598 1310735 . - . ID=Physo108157.1;Parent=Physo108157;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 1309599 1310735 . - 0 ID=Physo108157;Parent=Physo108157;rank=1 scaffold_1 ensembl protein_coding_gene 1311903 1312687 . + . ID=Physo108158;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10023;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1311903 1312687 . + . ID=Physo108158;Parent=Physo108158;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1311903 1311962 . + 0 ID=Physo108158;Parent=Physo108158;rank=1 scaffold_1 . exon 1311903 1311962 . + . ID=Physo108158.1;Parent=Physo108158;constitutive=1;rank=1 scaffold_1 . CDS 1312038 1312553 . + 0 ID=Physo108158;Parent=Physo108158;rank=2 scaffold_1 . exon 1312038 1312687 . + . ID=Physo108158.2;Parent=Physo108158;constitutive=1;ensembl_end_phase=-1;rank=2 scaffold_1 ensembl protein_coding_gene 1317537 1318273 . - . ID=Physo108159;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10024;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1317537 1318273 . - . ID=Physo108159;Parent=Physo108159;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1317537 1318028 . - 0 ID=Physo108159;Parent=Physo108159;rank=2 scaffold_1 . exon 1317537 1318028 . - . ID=Physo108159.2;Parent=Physo108159;constitutive=1;rank=2 scaffold_1 . CDS 1318133 1318273 . - 0 ID=Physo108159;Parent=Physo108159;rank=1 scaffold_1 . exon 1318133 1318273 . - . ID=Physo108159.1;Parent=Physo108159;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1312939 1314792 . - . ID=Physo127334;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10314;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1312939 1314792 . - . ID=Physo127334;Parent=Physo127334;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1312939 1313300 . - . ID=Physo127334.5;Parent=Physo127334;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_1 . CDS 1313235 1313300 . - 0 ID=Physo127334;Parent=Physo127334;rank=5 scaffold_1 . CDS 1313373 1313471 . - 0 ID=Physo127334;Parent=Physo127334;rank=4 scaffold_1 . exon 1313373 1313471 . - . ID=Physo127334.4;Parent=Physo127334;constitutive=1;rank=4 scaffold_1 . CDS 1313544 1313768 . - 0 ID=Physo127334;Parent=Physo127334;rank=3 scaffold_1 . exon 1313544 1313768 . - . ID=Physo127334.3;Parent=Physo127334;constitutive=1;rank=3 scaffold_1 . CDS 1313845 1313948 . - 0 ID=Physo127334;Parent=Physo127334;rank=2 scaffold_1 . exon 1313845 1313948 . - . ID=Physo127334.2;Parent=Physo127334;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1314021 1314792 . - 0 ID=Physo127334;Parent=Physo127334;rank=1 scaffold_1 . exon 1314021 1314792 . - . ID=Physo127334.1;Parent=Physo127334;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . exon 1308932 1308962 . + . ID=Physo155261.10;Parent=Physo155261;constitutive=1;ensembl_phase=2;rank=10 scaffold_1 ensembl protein_coding_gene 1314986 1317070 . + . ID=Physo155263;biotype=protein_coding;external_name=C_scaffold_1000067;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1314986 1317070 . + . ID=Physo155263;Parent=Physo155263;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1314986 1315098 . + 0 ID=Physo155263;Parent=Physo155263;rank=1 scaffold_1 . exon 1314986 1315098 . + . ID=Physo155263.1;Parent=Physo155263;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1315160 1315304 . + 0 ID=Physo155263;Parent=Physo155263;rank=2 scaffold_1 . exon 1315160 1315304 . + . ID=Physo155263.2;Parent=Physo155263;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1315368 1315505 . + 0 ID=Physo155263;Parent=Physo155263;rank=3 scaffold_1 . exon 1315368 1315505 . + . ID=Physo155263.3;Parent=Physo155263;constitutive=1;rank=3 scaffold_1 . CDS 1315579 1315677 . + 0 ID=Physo155263;Parent=Physo155263;rank=4 scaffold_1 . exon 1315579 1315677 . + . ID=Physo155263.4;Parent=Physo155263;constitutive=1;rank=4 scaffold_1 . CDS 1315753 1315884 . + 0 ID=Physo155263;Parent=Physo155263;rank=5 scaffold_1 . exon 1315753 1315884 . + . ID=Physo155263.5;Parent=Physo155263;constitutive=1;rank=5 scaffold_1 . CDS 1315961 1316006 . + 0 ID=Physo155263;Parent=Physo155263;rank=6 scaffold_1 . exon 1315961 1316006 . + . ID=Physo155263.6;Parent=Physo155263;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_1 . CDS 1316088 1316215 . + 0 ID=Physo155263;Parent=Physo155263;rank=7 scaffold_1 . exon 1316088 1316215 . + . ID=Physo155263.7;Parent=Physo155263;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 . CDS 1316289 1316684 . + 0 ID=Physo155263;Parent=Physo155263;rank=8 scaffold_1 . exon 1316289 1316684 . + . ID=Physo155263.8;Parent=Physo155263;constitutive=1;rank=8 scaffold_1 . CDS 1316990 1317070 . + 0 ID=Physo155263;Parent=Physo155263;rank=9 scaffold_1 . exon 1316990 1317070 . + . ID=Physo155263.9;Parent=Physo155263;constitutive=1;rank=9 scaffold_1 . biological_region 1323507 1323510 0.999 + . logic_name=eponine scaffold_1 . biological_region 1323569 1323576 0.999 - . logic_name=eponine scaffold_1 . biological_region 1323626 1323629 0.999 + . logic_name=eponine scaffold_1 . biological_region 1325381 1325384 0.999 - . logic_name=eponine scaffold_1 . biological_region 1325864 1325865 0.999 + . logic_name=eponine scaffold_1 . biological_region 1327551 1327556 0.999 - . logic_name=eponine scaffold_1 . biological_region 1328245 1328245 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1327175 1328745 . + . ID=Physo108160;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10025;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1327175 1328745 . + . ID=Physo108160;Parent=Physo108160;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1327175 1327236 . + . ID=Physo108160.1;Parent=Physo108160;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1327205 1327236 . + 0 ID=Physo108160;Parent=Physo108160;rank=1 scaffold_1 . CDS 1327317 1328163 . + 0 ID=Physo108160;Parent=Physo108160;rank=2 scaffold_1 . exon 1327317 1328163 . + . ID=Physo108160.2;Parent=Physo108160;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1328272 1328535 . + 0 ID=Physo108160;Parent=Physo108160;rank=3 scaffold_1 . CDS 1328614 1328745 . + 0 ID=Physo108160;Parent=Physo108160;rank=4 scaffold_1 ensembl protein_coding_gene 1324615 1325558 . - . ID=Physo127337;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10317;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1324615 1325558 . - . ID=Physo127337;Parent=Physo127337;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1324615 1325517 . - 0 ID=Physo127337;Parent=Physo127337;rank=1 scaffold_1 . exon 1324615 1325558 . - . ID=Physo127337.1;Parent=Physo127337;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . repeat_region 1335567 1335586 . ? . description=dust scaffold_1 . repeat_region 1335567 1335586 . ? . description=trf scaffold_1 . repeat_region 1335892 1335914 . ? . description=dust scaffold_1 . exon 1328272 1328535 . + . ID=Physo108160.3;Parent=Physo108160;constitutive=1;rank=3 scaffold_1 . exon 1328614 1328745 . + . ID=Physo108160.4;Parent=Physo108160;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 1329247 1332043 . - . ID=Physo127339;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10319;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1329247 1332043 . - . ID=Physo127339;Parent=Physo127339;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1329247 1329766 . - . ID=Physo127339.5;Parent=Physo127339;constitutive=1;ensembl_end_phase=-1;rank=5 scaffold_1 . CDS 1329566 1329766 . - 0 ID=Physo127339;Parent=Physo127339;rank=5 scaffold_1 . CDS 1330062 1330107 . - 0 ID=Physo127339;Parent=Physo127339;rank=4 scaffold_1 . exon 1330062 1330107 . - . ID=Physo127339.4;Parent=Physo127339;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1330309 1331696 . - 0 ID=Physo127339;Parent=Physo127339;rank=3 scaffold_1 . exon 1330309 1331696 . - . ID=Physo127339.3;Parent=Physo127339;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 1331763 1331930 . - 0 ID=Physo127339;Parent=Physo127339;rank=2 scaffold_1 . exon 1331763 1331930 . - . ID=Physo127339.2;Parent=Physo127339;constitutive=1;rank=2 scaffold_1 . CDS 1331996 1332043 . - 0 ID=Physo127339;Parent=Physo127339;rank=1 scaffold_1 . exon 1331996 1332043 . - . ID=Physo127339.1;Parent=Physo127339;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1335089 1335930 . - . ID=Physo127340;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10320;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1335089 1335930 . - . ID=Physo127340;Parent=Physo127340;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1335089 1335549 . - . ID=Physo127340.2;Parent=Physo127340;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1335129 1335549 . - 0 ID=Physo127340;Parent=Physo127340;rank=2 scaffold_1 . CDS 1335652 1335872 . - 0 ID=Physo127340;Parent=Physo127340;rank=1 scaffold_1 . exon 1335652 1335930 . - . ID=Physo127340.1;Parent=Physo127340;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1336967 1338789 . + . ID=Physo127341;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10321;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1336967 1338789 . + . ID=Physo127341;Parent=Physo127341;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1336967 1338628 . + 0 ID=Physo127341;Parent=Physo127341;rank=1 scaffold_1 . exon 1336967 1338789 . + . ID=Physo127341.1;Parent=Physo127341;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . biological_region 1338390 1338391 0.999 - . logic_name=eponine scaffold_1 . biological_region 1340378 1340382 0.999 - . logic_name=eponine scaffold_1 . biological_region 1340631 1340633 0.999 - . logic_name=eponine scaffold_1 . biological_region 1341515 1341520 0.999 - . logic_name=eponine scaffold_1 . biological_region 1341745 1341748 0.999 + . logic_name=eponine scaffold_1 . biological_region 1343272 1343273 0.999 + . logic_name=eponine scaffold_1 . biological_region 1343425 1343428 0.999 - . logic_name=eponine scaffold_1 . biological_region 1343653 1343658 0.999 + . logic_name=eponine scaffold_1 . biological_region 1344540 1344542 0.999 + . logic_name=eponine scaffold_1 . biological_region 1345621 1345626 0.999 + . logic_name=eponine scaffold_1 . biological_region 1345642 1345646 0.999 + . logic_name=eponine scaffold_1 . biological_region 1346229 1346231 0.999 - . logic_name=eponine scaffold_1 . biological_region 1346300 1346303 0.999 - . logic_name=eponine scaffold_1 . biological_region 1347071 1347072 0.999 + . logic_name=eponine scaffold_1 . biological_region 1348127 1348130 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1339536 1339823 . - . ID=Physo110033;biotype=protein_coding;external_name=estExt_Genewise1.C_10271;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1339536 1339823 . - . ID=Physo110033;Parent=Physo110033;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1339536 1339823 . - . ID=Physo110033.1;Parent=Physo110033;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1339537 1339821 . - 0 ID=Physo110033;Parent=Physo110033;rank=1 scaffold_1 ensembl protein_coding_gene 1338903 1339319 . + . ID=Physo127342;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10322;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1338903 1339319 . + . ID=Physo127342;Parent=Physo127342;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1338903 1339319 . + 0 ID=Physo127342;Parent=Physo127342;rank=1 scaffold_1 . exon 1338903 1339319 . + . ID=Physo127342.1;Parent=Physo127342;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1340774 1341580 . + . ID=Physo127343;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10323;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1340774 1341580 . + . ID=Physo127343;Parent=Physo127343;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1340774 1341580 . + 0 ID=Physo127343;Parent=Physo127343;rank=1 scaffold_1 . exon 1340774 1341580 . + . ID=Physo127343.1;Parent=Physo127343;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1342377 1342964 . - . ID=Physo127344;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10324;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1342377 1342964 . - . ID=Physo127344;Parent=Physo127344;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1342377 1342964 . - 0 ID=Physo127344;Parent=Physo127344;rank=1 scaffold_1 . exon 1342377 1342964 . - . ID=Physo127344.1;Parent=Physo127344;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1343592 1344398 . - . ID=Physo127345;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10325;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1343592 1344398 . - . ID=Physo127345;Parent=Physo127345;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1343592 1344398 . - 0 ID=Physo127345;Parent=Physo127345;rank=1 scaffold_1 . exon 1343592 1344398 . - . ID=Physo127345.1;Parent=Physo127345;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1344981 1346510 . - . ID=Physo127346;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10326;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1344981 1346510 . - . ID=Physo127346;Parent=Physo127346;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1344981 1345270 . - 0 ID=Physo127346;Parent=Physo127346;rank=5 scaffold_1 . exon 1344981 1345270 . - . ID=Physo127346.5;Parent=Physo127346;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 1345364 1345538 . - 0 ID=Physo127346;Parent=Physo127346;rank=4 scaffold_1 . exon 1345364 1345538 . - . ID=Physo127346.4;Parent=Physo127346;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 1345667 1345851 . - 0 ID=Physo127346;Parent=Physo127346;rank=3 scaffold_1 . exon 1345667 1345851 . - . ID=Physo127346.3;Parent=Physo127346;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1345923 1346136 . - 0 ID=Physo127346;Parent=Physo127346;rank=2 scaffold_1 . exon 1345923 1346136 . - . ID=Physo127346.2;Parent=Physo127346;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1346232 1346510 . - 0 ID=Physo127346;Parent=Physo127346;rank=1 scaffold_1 . exon 1346232 1346510 . - . ID=Physo127346.1;Parent=Physo127346;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1346936 1353204 . + . ID=Physo127347;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10327;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1346936 1353204 . + . ID=Physo127347;Parent=Physo127347;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1346936 1347294 . + 0 ID=Physo127347;Parent=Physo127347;rank=1 scaffold_1 . exon 1346936 1347294 . + . ID=Physo127347.1;Parent=Physo127347;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1347377 1347507 . + 0 ID=Physo127347;Parent=Physo127347;rank=2 scaffold_1 . exon 1347377 1347507 . + . ID=Physo127347.2;Parent=Physo127347;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1347598 1347743 . + 0 ID=Physo127347;Parent=Physo127347;rank=3 scaffold_1 . exon 1347598 1347743 . + . ID=Physo127347.3;Parent=Physo127347;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1347976 1353204 . + 0 ID=Physo127347;Parent=Physo127347;rank=4 scaffold_1 . exon 1347976 1353204 . + . ID=Physo127347.4;Parent=Physo127347;constitutive=1;rank=4 scaffold_1 . repeat_region 1356403 1356411 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1356474 1358835 . + . ID=Physo127348;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10328;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1356474 1358835 . + . ID=Physo127348;Parent=Physo127348;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1356474 1356530 . + 0 ID=Physo127348;Parent=Physo127348;rank=1 scaffold_1 . exon 1356474 1356530 . + . ID=Physo127348.1;Parent=Physo127348;constitutive=1;rank=1 scaffold_1 . CDS 1356610 1357015 . + 0 ID=Physo127348;Parent=Physo127348;rank=2 scaffold_1 . exon 1356610 1357015 . + . ID=Physo127348.2;Parent=Physo127348;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1357058 1358835 . + 0 ID=Physo127348;Parent=Physo127348;rank=3 scaffold_1 . exon 1357058 1358835 . + . ID=Physo127348.3;Parent=Physo127348;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . biological_region 1364498 1364503 0.999 + . logic_name=eponine scaffold_1 . biological_region 1364534 1364537 0.999 + . logic_name=eponine scaffold_1 . biological_region 1364606 1364611 0.999 + . logic_name=eponine scaffold_1 . biological_region 1364641 1364644 0.999 - . logic_name=eponine scaffold_1 . biological_region 1367485 1367490 0.999 + . logic_name=eponine scaffold_1 . biological_region 1367527 1367529 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1360692 1361017 . + . ID=Physo110038;biotype=protein_coding;external_name=estExt_Genewise1.C_10276;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1360692 1361017 . + . ID=Physo110038;Parent=Physo110038;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1360692 1361017 . + . ID=Physo110038.1;Parent=Physo110038;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1360833 1361006 . + 0 ID=Physo110038;Parent=Physo110038;rank=1 scaffold_1 ensembl protein_coding_gene 1363879 1364316 . + . ID=Physo127349;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10329;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1363879 1364316 . + . ID=Physo127349;Parent=Physo127349;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1363879 1364316 . + 0 ID=Physo127349;Parent=Physo127349;rank=1 scaffold_1 . exon 1363879 1364316 . + . ID=Physo127349.1;Parent=Physo127349;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1365083 1367625 . - . ID=Physo127350;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10330;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1365083 1367625 . - . ID=Physo127350;Parent=Physo127350;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1365083 1365627 . - 0 ID=Physo127350;Parent=Physo127350;rank=4 scaffold_1 . exon 1365083 1365627 . - . ID=Physo127350.4;Parent=Physo127350;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1365948 1366379 . - 0 ID=Physo127350;Parent=Physo127350;rank=3 scaffold_1 . exon 1365948 1366379 . - . ID=Physo127350.3;Parent=Physo127350;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1366448 1366615 . - 0 ID=Physo127350;Parent=Physo127350;rank=2 scaffold_1 . exon 1366448 1366615 . - . ID=Physo127350.2;Parent=Physo127350;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1366698 1367625 . - 0 ID=Physo127350;Parent=Physo127350;rank=1 scaffold_1 . exon 1366698 1367625 . - . ID=Physo127350.1;Parent=Physo127350;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . repeat_region 1371643 1371688 . ? . description=trf scaffold_1 . repeat_region 1379991 1380001 . ? . description=dust scaffold_1 . biological_region 1382052 1382054 0.999 - . logic_name=eponine scaffold_1 . biological_region 1382077 1382078 0.999 - . logic_name=eponine scaffold_1 . repeat_region 1382182 1382202 . ? . description=dust scaffold_1 . repeat_region 1382302 1382383 . ? . description=dust scaffold_1 . repeat_region 1382386 1382435 . ? . description=dust scaffold_1 . biological_region 1386489 1386490 0.999 - . logic_name=eponine scaffold_1 . biological_region 1387348 1387349 0.999 + . logic_name=eponine scaffold_1 . biological_region 1387398 1387400 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1384490 1385071 . + . ID=Physo127351;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10331;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1384490 1385071 . + . ID=Physo127351;Parent=Physo127351;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1384490 1385071 . + 0 ID=Physo127351;Parent=Physo127351;rank=1 scaffold_1 . exon 1384490 1385071 . + . ID=Physo127351.1;Parent=Physo127351;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1387091 1387489 . + . ID=Physo127352;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10332;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1387091 1387489 . + . ID=Physo127352;Parent=Physo127352;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1387091 1387489 . + 0 ID=Physo127352;Parent=Physo127352;rank=1 scaffold_1 . exon 1387091 1387489 . + . ID=Physo127352.1;Parent=Physo127352;constitutive=1;rank=1 scaffold_1 . repeat_region 1389862 1389957 . ? . description=trf scaffold_1 . repeat_region 1392991 1393014 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1389857 1390354 . - . ID=Physo127353;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10333;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1389857 1390354 . - . ID=Physo127353;Parent=Physo127353;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1389857 1390354 . - 0 ID=Physo127353;Parent=Physo127353;rank=1 scaffold_1 . exon 1389857 1390354 . - . ID=Physo127353.1;Parent=Physo127353;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1393456 1397023 . + . ID=Physo127354;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10334;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1393456 1397023 . + . ID=Physo127354;Parent=Physo127354;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1393456 1397023 . + . ID=Physo127354.1;Parent=Physo127354;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1393573 1396779 . + 0 ID=Physo127354;Parent=Physo127354;rank=1 scaffold_1 ensembl protein_coding_gene 1397141 1400827 . + . ID=Physo127355;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10335;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1397141 1400827 . + . ID=Physo127355;Parent=Physo127355;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1397141 1397644 . + 0 ID=Physo127355;Parent=Physo127355;rank=1 scaffold_1 . exon 1397141 1397644 . + . ID=Physo127355.1;Parent=Physo127355;constitutive=1;rank=1 scaffold_1 . CDS 1397971 1399583 . + 0 ID=Physo127355;Parent=Physo127355;rank=2 scaffold_1 . exon 1397971 1399583 . + . ID=Physo127355.2;Parent=Physo127355;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 1399671 1399829 . + 0 ID=Physo127355;Parent=Physo127355;rank=3 scaffold_1 . CDS 1399931 1400018 . + 0 ID=Physo127355;Parent=Physo127355;rank=4 scaffold_1 . CDS 1400132 1400302 . + 0 ID=Physo127355;Parent=Physo127355;rank=5 scaffold_1 . CDS 1400366 1400693 . + 0 ID=Physo127355;Parent=Physo127355;rank=6 scaffold_1 . CDS 1400769 1400827 . + 0 ID=Physo127355;Parent=Physo127355;rank=7 scaffold_1 . biological_region 1398216 1398216 0.999 + . logic_name=eponine scaffold_1 . biological_region 1399234 1399235 0.999 + . logic_name=eponine scaffold_1 . biological_region 1401328 1401332 0.999 - . logic_name=eponine scaffold_1 . biological_region 1401426 1401431 0.999 - . logic_name=eponine scaffold_1 . biological_region 1401514 1401515 0.999 + . logic_name=eponine scaffold_1 . biological_region 1401557 1401562 0.999 - . logic_name=eponine scaffold_1 . biological_region 1404415 1404415 0.999 + . logic_name=eponine scaffold_1 . biological_region 1405187 1405188 0.999 - . logic_name=eponine scaffold_1 . biological_region 1405266 1405268 0.999 - . logic_name=eponine scaffold_1 . biological_region 1406980 1406986 0.999 + . logic_name=eponine scaffold_1 . biological_region 1407152 1407155 0.999 - . logic_name=eponine scaffold_1 . biological_region 1407211 1407212 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1401148 1402081 . + . ID=Physo108161;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10026;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1401148 1402081 . + . ID=Physo108161;Parent=Physo108161;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1401148 1401199 . + 0 ID=Physo108161;Parent=Physo108161;rank=1 scaffold_1 . exon 1401148 1401199 . + . ID=Physo108161.1;Parent=Physo108161;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1401275 1401703 . + 0 ID=Physo108161;Parent=Physo108161;rank=2 scaffold_1 . exon 1401275 1401703 . + . ID=Physo108161.2;Parent=Physo108161;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1401786 1402081 . + 0 ID=Physo108161;Parent=Physo108161;rank=3 scaffold_1 . exon 1401786 1402081 . + . ID=Physo108161.3;Parent=Physo108161;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . exon 1399671 1399829 . + . ID=Physo127355.3;Parent=Physo127355;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=3 scaffold_1 . exon 1399931 1400018 . + . ID=Physo127355.4;Parent=Physo127355;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . exon 1400132 1400302 . + . ID=Physo127355.5;Parent=Physo127355;constitutive=1;rank=5 scaffold_1 . exon 1400366 1400693 . + . ID=Physo127355.6;Parent=Physo127355;constitutive=1;ensembl_end_phase=1;rank=6 scaffold_1 . exon 1400769 1400827 . + . ID=Physo127355.7;Parent=Physo127355;constitutive=1;ensembl_phase=1;rank=7 scaffold_1 ensembl protein_coding_gene 1402212 1404355 . + . ID=Physo127357;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10337;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1402212 1404355 . + . ID=Physo127357;Parent=Physo127357;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1402212 1402327 . + 0 ID=Physo127357;Parent=Physo127357;rank=1 scaffold_1 . exon 1402212 1402327 . + . ID=Physo127357.1;Parent=Physo127357;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1402402 1404007 . + 0 ID=Physo127357;Parent=Physo127357;rank=2 scaffold_1 . exon 1402402 1404007 . + . ID=Physo127357.2;Parent=Physo127357;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1404278 1404355 . + 0 ID=Physo127357;Parent=Physo127357;rank=3 scaffold_1 . exon 1404278 1404355 . + . ID=Physo127357.3;Parent=Physo127357;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 1404422 1407589 . - . ID=Physo127358;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10338;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1404422 1407589 . - . ID=Physo127358;Parent=Physo127358;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1404422 1407589 . - 0 ID=Physo127358;Parent=Physo127358;rank=1 scaffold_1 . exon 1404422 1407589 . - . ID=Physo127358.1;Parent=Physo127358;constitutive=1;rank=1 scaffold_1 . repeat_region 1414679 1414686 . ? . description=dust scaffold_1 . repeat_region 1415120 1415167 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1408277 1410361 . + . ID=Physo127359;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10339;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1408277 1410361 . + . ID=Physo127359;Parent=Physo127359;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1408277 1410361 . + 0 ID=Physo127359;Parent=Physo127359;rank=1 scaffold_1 . exon 1408277 1410361 . + . ID=Physo127359.1;Parent=Physo127359;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1410995 1414614 . + . ID=Physo127360;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10340;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1410995 1414614 . + . ID=Physo127360;Parent=Physo127360;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1410995 1414022 . + 0 ID=Physo127360;Parent=Physo127360;rank=1 scaffold_1 . exon 1410995 1414022 . + . ID=Physo127360.1;Parent=Physo127360;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1414100 1414614 . + 0 ID=Physo127360;Parent=Physo127360;rank=2 scaffold_1 . exon 1414100 1414614 . + . ID=Physo127360.2;Parent=Physo127360;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 ensembl protein_coding_gene 1414782 1423584 . + . ID=Physo127361;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10341;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1414782 1423584 . + . ID=Physo127361;Parent=Physo127361;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1414782 1422763 . + 0 ID=Physo127361;Parent=Physo127361;rank=1 scaffold_1 . exon 1414782 1422763 . + . ID=Physo127361.1;Parent=Physo127361;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1422865 1423275 . + 0 ID=Physo127361;Parent=Physo127361;rank=2 scaffold_1 . CDS 1423335 1423584 . + 0 ID=Physo127361;Parent=Physo127361;rank=3 scaffold_1 . biological_region 1419429 1419431 0.999 - . logic_name=eponine scaffold_1 . biological_region 1421961 1421964 0.999 - . logic_name=eponine scaffold_1 . biological_region 1422877 1422883 0.999 + . logic_name=eponine scaffold_1 . biological_region 1423180 1423182 0.999 + . logic_name=eponine scaffold_1 . biological_region 1423202 1423206 0.999 + . logic_name=eponine scaffold_1 . biological_region 1423307 1423311 0.999 - . logic_name=eponine scaffold_1 . biological_region 1423327 1423333 0.999 - . logic_name=eponine scaffold_1 . biological_region 1423346 1423350 0.999 - . logic_name=eponine scaffold_1 . biological_region 1423363 1423368 0.999 + . logic_name=eponine scaffold_1 . biological_region 1423400 1423413 0.999 + . logic_name=eponine scaffold_1 . biological_region 1423402 1423406 0.999 - . logic_name=eponine scaffold_1 . biological_region 1423461 1423467 0.999 - . logic_name=eponine scaffold_1 . exon 1422865 1423275 . + . ID=Physo127361.2;Parent=Physo127361;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . exon 1423335 1423584 . + . ID=Physo127361.3;Parent=Physo127361;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . repeat_region 1433831 1433845 . ? . description=dust scaffold_1 . repeat_region 1436336 1436347 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1432151 1435155 . + . ID=Physo127362;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10342;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1432151 1435155 . + . ID=Physo127362;Parent=Physo127362;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1432151 1432565 . + 0 ID=Physo127362;Parent=Physo127362;rank=1 scaffold_1 . exon 1432151 1432565 . + . ID=Physo127362.1;Parent=Physo127362;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1432946 1433298 . + 0 ID=Physo127362;Parent=Physo127362;rank=2 scaffold_1 . exon 1432946 1433298 . + . ID=Physo127362.2;Parent=Physo127362;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1433962 1435155 . + 0 ID=Physo127362;Parent=Physo127362;rank=3 scaffold_1 . exon 1433962 1435155 . + . ID=Physo127362.3;Parent=Physo127362;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 1437020 1438397 . + . ID=Physo127363;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10343;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1437020 1438397 . + . ID=Physo127363;Parent=Physo127363;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1437020 1437088 . + 0 ID=Physo127363;Parent=Physo127363;rank=1 scaffold_1 . exon 1437020 1437088 . + . ID=Physo127363.1;Parent=Physo127363;constitutive=1;rank=1 scaffold_1 . CDS 1437175 1437804 . + 0 ID=Physo127363;Parent=Physo127363;rank=2 scaffold_1 . exon 1437175 1437804 . + . ID=Physo127363.2;Parent=Physo127363;constitutive=1;rank=2 scaffold_1 . CDS 1437830 1437971 . + 0 ID=Physo127363;Parent=Physo127363;rank=3 scaffold_1 . exon 1437830 1437971 . + . ID=Physo127363.3;Parent=Physo127363;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 1438306 1438397 . + 0 ID=Physo127363;Parent=Physo127363;rank=4 scaffold_1 . biological_region 1446483 1446484 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1447191 1447217 . ? . description=trf scaffold_1 . biological_region 1448008 1448010 0.999 + . logic_name=eponine scaffold_1 . biological_region 1448055 1448058 0.999 - . logic_name=eponine scaffold_1 . exon 1438306 1438397 . + . ID=Physo127363.4;Parent=Physo127363;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 ensembl protein_coding_gene 1438917 1439870 . - . ID=Physo127364;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10344;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1438917 1439870 . - . ID=Physo127364;Parent=Physo127364;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1438917 1439870 . - 0 ID=Physo127364;Parent=Physo127364;rank=1 scaffold_1 . exon 1438917 1439870 . - . ID=Physo127364.1;Parent=Physo127364;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1447683 1449797 . - . ID=Physo127365;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10345;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1447683 1449797 . - . ID=Physo127365;Parent=Physo127365;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1447683 1449191 . - 0 ID=Physo127365;Parent=Physo127365;rank=2 scaffold_1 . exon 1447683 1449191 . - . ID=Physo127365.2;Parent=Physo127365;constitutive=1;rank=2 scaffold_1 . CDS 1449306 1449797 . - 0 ID=Physo127365;Parent=Physo127365;rank=1 scaffold_1 . repeat_region 1449797 1449845 . ? . description=dust scaffold_1 . repeat_region 1456400 1456881 . + . description=Polinton-1_PI scaffold_1 . exon 1449306 1449797 . - . ID=Physo127365.1;Parent=Physo127365;constitutive=1;rank=1 scaffold_1 . biological_region 1465102 1465102 0.999 + . logic_name=eponine scaffold_1 . biological_region 1465571 1465576 0.999 - . logic_name=eponine scaffold_1 . biological_region 1465666 1465671 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1460833 1462020 . - . ID=Physo127366;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10346;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1460833 1462020 . - . ID=Physo127366;Parent=Physo127366;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1460833 1462020 . - 0 ID=Physo127366;Parent=Physo127366;rank=1 scaffold_1 . exon 1460833 1462020 . - . ID=Physo127366.1;Parent=Physo127366;constitutive=1;rank=1 scaffold_1 . repeat_region 1468505 1468546 . ? . description=trf scaffold_1 . repeat_region 1469106 1469118 . ? . description=dust scaffold_1 . repeat_region 1469843 1469862 . ? . description=trf scaffold_1 . repeat_region 1470444 1470748 . + . description=Polinton-1_PI scaffold_1 . repeat_region 1470772 1473220 . - . description=Polinton-1_PI scaffold_1 . repeat_region 1473983 1473992 . ? . description=dust scaffold_1 . repeat_region 1476103 1477476 . - . description=Polinton-1_PI scaffold_1 . repeat_region 1476199 1476218 . ? . description=trf scaffold_1 . repeat_region 1476443 1476461 . ? . description=dust scaffold_1 . biological_region 1486737 1486742 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1479960 1480544 . - . ID=Physo110063;biotype=protein_coding;external_name=estExt_Genewise1.C_10301;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1479960 1480544 . - . ID=Physo110063;Parent=Physo110063;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1479960 1480268 . - 0 ID=Physo110063;Parent=Physo110063;rank=1 scaffold_1 . exon 1479960 1480544 . - . ID=Physo110063.1;Parent=Physo110063;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1486047 1487053 . + . ID=Physo110064;biotype=protein_coding;external_name=estExt_Genewise1.C_10302;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1486047 1487053 . + . ID=Physo110064;Parent=Physo110064;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1486047 1487053 . + . ID=Physo110064.1;Parent=Physo110064;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1486088 1486636 . + 0 ID=Physo110064;Parent=Physo110064;rank=1 scaffold_1 ensembl protein_coding_gene 1482180 1483397 . - . ID=Physo127367;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10347;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1482180 1483397 . - . ID=Physo127367;Parent=Physo127367;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1482180 1482191 . - 0 ID=Physo127367;Parent=Physo127367;rank=3 scaffold_1 . exon 1482180 1482191 . - . ID=Physo127367.3;Parent=Physo127367;constitutive=1;rank=3 scaffold_1 . CDS 1482277 1482866 . - 0 ID=Physo127367;Parent=Physo127367;rank=2 scaffold_1 . exon 1482277 1482866 . - . ID=Physo127367.2;Parent=Physo127367;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1483040 1483397 . - 0 ID=Physo127367;Parent=Physo127367;rank=1 scaffold_1 . exon 1483040 1483397 . - . ID=Physo127367.1;Parent=Physo127367;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . repeat_region 1489491 1489533 . ? . description=dust scaffold_1 . repeat_region 1490565 1490659 . ? . description=trf scaffold_1 . repeat_region 1490846 1490888 . ? . description=trf scaffold_1 . repeat_region 1491576 1491589 . ? . description=dust scaffold_1 . repeat_region 1492020 1492051 . ? . description=dust scaffold_1 . repeat_region 1492020 1492052 . ? . description=trf scaffold_1 . repeat_region 1493546 1493562 . ? . description=dust scaffold_1 . repeat_region 1495386 1495418 . ? . description=trf scaffold_1 . repeat_region 1495393 1495504 . ? . description=trf scaffold_1 . repeat_region 1501846 1503992 . - . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 1503993 1504298 . - . description=GypsyPi-1c_LTR scaffold_1 . biological_region 1504699 1504705 0.999 + . logic_name=eponine scaffold_1 . biological_region 1504753 1504766 0.999 - . logic_name=eponine scaffold_1 . biological_region 1504760 1504764 0.999 + . logic_name=eponine scaffold_1 . biological_region 1504798 1504803 0.999 - . logic_name=eponine scaffold_1 . biological_region 1504816 1504820 0.999 + . logic_name=eponine scaffold_1 . biological_region 1504833 1504839 0.999 + . logic_name=eponine scaffold_1 . biological_region 1504855 1504859 0.999 + . logic_name=eponine scaffold_1 . biological_region 1504960 1504964 0.999 - . logic_name=eponine scaffold_1 . biological_region 1504984 1504986 0.999 - . logic_name=eponine scaffold_1 . biological_region 1505359 1505362 0.999 + . logic_name=eponine scaffold_1 . biological_region 1506495 1506497 0.999 - . logic_name=eponine scaffold_1 . biological_region 1506533 1506535 0.999 - . logic_name=eponine scaffold_1 . biological_region 1506539 1506540 0.999 - . logic_name=eponine scaffold_1 . biological_region 1506549 1506552 0.999 + . logic_name=eponine scaffold_1 . biological_region 1506634 1506635 0.999 - . logic_name=eponine scaffold_1 . biological_region 1506997 1507000 0.999 + . logic_name=eponine scaffold_1 . biological_region 1507048 1507051 0.999 + . logic_name=eponine scaffold_1 . biological_region 1507236 1507238 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1506327 1507391 . + . ID=Physo108162;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10027;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1506327 1507391 . + . ID=Physo108162;Parent=Physo108162;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1506327 1507391 . + . ID=Physo108162.1;Parent=Physo108162;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1506345 1507391 . + 0 ID=Physo108162;Parent=Physo108162;rank=1 scaffold_1 ensembl protein_coding_gene 1507580 1508558 . - . ID=Physo110069;biotype=protein_coding;external_name=estExt_Genewise1.C_10307;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1507580 1508558 . - . ID=Physo110069;Parent=Physo110069;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1507580 1507891 . - 0 ID=Physo110069;Parent=Physo110069;rank=2 scaffold_1 . exon 1507580 1507891 . - . ID=Physo110069.2;Parent=Physo110069;constitutive=1;rank=2 scaffold_1 . CDS 1507971 1508546 . - 0 ID=Physo110069;Parent=Physo110069;rank=1 scaffold_1 . exon 1507971 1508558 . - . ID=Physo110069.1;Parent=Physo110069;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1502794 1503905 . - . ID=Physo127368;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10348;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1502794 1503905 . - . ID=Physo127368;Parent=Physo127368;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1502794 1502882 . - 0 ID=Physo127368;Parent=Physo127368;rank=4 scaffold_1 . exon 1502794 1502882 . - . ID=Physo127368.4;Parent=Physo127368;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1502953 1503065 . - 0 ID=Physo127368;Parent=Physo127368;rank=3 scaffold_1 . exon 1502953 1503065 . - . ID=Physo127368.3;Parent=Physo127368;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1503101 1503711 . - 0 ID=Physo127368;Parent=Physo127368;rank=2 scaffold_1 . exon 1503101 1503711 . - . ID=Physo127368.2;Parent=Physo127368;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 1503777 1503905 . - 0 ID=Physo127368;Parent=Physo127368;rank=1 scaffold_1 . exon 1503777 1503905 . - . ID=Physo127368.1;Parent=Physo127368;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1504626 1505582 . + . ID=Physo127369;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10349;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1504626 1505582 . + . ID=Physo127369;Parent=Physo127369;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1504626 1505582 . + 0 ID=Physo127369;Parent=Physo127369;rank=1 scaffold_1 . exon 1504626 1505582 . + . ID=Physo127369.1;Parent=Physo127369;constitutive=1;rank=1 scaffold_1 . repeat_region 1508626 1508666 . ? . description=trf scaffold_1 . repeat_region 1516600 1516737 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1510565 1515343 . + . ID=Physo127372;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10352;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1510565 1515343 . + . ID=Physo127372;Parent=Physo127372;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1510565 1515343 . + 0 ID=Physo127372;Parent=Physo127372;rank=1 scaffold_1 . exon 1510565 1515343 . + . ID=Physo127372.1;Parent=Physo127372;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1515468 1517024 . - . ID=Physo127373;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10353;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1515468 1517024 . - . ID=Physo127373;Parent=Physo127373;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1515468 1517024 . - 0 ID=Physo127373;Parent=Physo127373;rank=1 scaffold_1 . exon 1515468 1517024 . - . ID=Physo127373.1;Parent=Physo127373;constitutive=1;rank=1 scaffold_1 . biological_region 1518282 1518286 0.999 - . logic_name=eponine scaffold_1 . biological_region 1518400 1518405 0.999 - . logic_name=eponine scaffold_1 . biological_region 1520148 1520150 0.999 - . logic_name=eponine scaffold_1 . biological_region 1520265 1520269 0.999 - . logic_name=eponine scaffold_1 . biological_region 1527547 1527550 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1518211 1518793 . + . ID=Physo127374;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10354;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1518211 1518793 . + . ID=Physo127374;Parent=Physo127374;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1518211 1518452 . + 0 ID=Physo127374;Parent=Physo127374;rank=1 scaffold_1 . exon 1518211 1518452 . + . ID=Physo127374.1;Parent=Physo127374;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1518523 1518793 . + 0 ID=Physo127374;Parent=Physo127374;rank=2 scaffold_1 . exon 1518523 1518793 . + . ID=Physo127374.2;Parent=Physo127374;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 1518944 1523892 . - . ID=Physo127375;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10355;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1518944 1523892 . - . ID=Physo127375;Parent=Physo127375;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1518944 1519055 . - 0 ID=Physo127375;Parent=Physo127375;rank=6 scaffold_1 . exon 1518944 1519055 . - . ID=Physo127375.6;Parent=Physo127375;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 1519139 1519855 . - 0 ID=Physo127375;Parent=Physo127375;rank=5 scaffold_1 . exon 1519139 1519855 . - . ID=Physo127375.5;Parent=Physo127375;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=5 scaffold_1 . CDS 1519961 1522719 . - 0 ID=Physo127375;Parent=Physo127375;rank=4 scaffold_1 . exon 1519961 1522719 . - . ID=Physo127375.4;Parent=Physo127375;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 1523050 1523173 . - 0 ID=Physo127375;Parent=Physo127375;rank=3 scaffold_1 . exon 1523050 1523173 . - . ID=Physo127375.3;Parent=Physo127375;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1523199 1523207 . - 0 ID=Physo127375;Parent=Physo127375;rank=2 scaffold_1 . exon 1523199 1523207 . - . ID=Physo127375.2;Parent=Physo127375;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=2 scaffold_1 . CDS 1523342 1523892 . - 0 ID=Physo127375;Parent=Physo127375;rank=1 scaffold_1 . exon 1523342 1523892 . - . ID=Physo127375.1;Parent=Physo127375;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1525711 1526493 . + . ID=Physo127376;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10356;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1525711 1526493 . + . ID=Physo127376;Parent=Physo127376;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1525711 1526493 . + 0 ID=Physo127376;Parent=Physo127376;rank=1 scaffold_1 . exon 1525711 1526493 . + . ID=Physo127376.1;Parent=Physo127376;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1527016 1527624 . + . ID=Physo127377;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10357;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1527016 1527624 . + . ID=Physo127377;Parent=Physo127377;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1527016 1527624 . + 0 ID=Physo127377;Parent=Physo127377;rank=1 scaffold_1 . exon 1527016 1527624 . + . ID=Physo127377.1;Parent=Physo127377;constitutive=1;rank=1 scaffold_1 . repeat_region 1529538 1529574 . ? . description=trf scaffold_1 . repeat_region 1533609 1533616 . ? . description=dust scaffold_1 . repeat_region 1535696 1535703 . ? . description=dust scaffold_1 . repeat_region 1535757 1535839 . ? . description=trf scaffold_1 . repeat_region 1536451 1536486 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1531544 1533016 . - . ID=Physo110075;biotype=protein_coding;external_name=estExt_Genewise1.C_10313;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1531544 1533016 . - . ID=Physo110075;Parent=Physo110075;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1531544 1532836 . - 0 ID=Physo110075;Parent=Physo110075;rank=1 scaffold_1 . exon 1531544 1533016 . - . ID=Physo110075.1;Parent=Physo110075;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1533925 1534671 . - . ID=Physo110084;biotype=protein_coding;external_name=estExt_Genewise1.C_10322;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1533925 1534671 . - . ID=Physo110084;Parent=Physo110084;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1533925 1534671 . - 0 ID=Physo110084;Parent=Physo110084;rank=1 scaffold_1 . exon 1533925 1534671 . - . ID=Physo110084.1;Parent=Physo110084;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1528023 1528720 . - . ID=Physo127378;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10358;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1528023 1528720 . - . ID=Physo127378;Parent=Physo127378;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1528023 1528720 . - . ID=Physo127378.1;Parent=Physo127378;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 1528046 1528720 . - 0 ID=Physo127378;Parent=Physo127378;rank=1 scaffold_1 ensembl protein_coding_gene 1530252 1530905 . - . ID=Physo127379;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10359;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1530252 1530905 . - . ID=Physo127379;Parent=Physo127379;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1530252 1530905 . - . ID=Physo127379.1;Parent=Physo127379;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 . CDS 1530324 1530905 . - 0 ID=Physo127379;Parent=Physo127379;rank=1 scaffold_1 ensembl protein_coding_gene 1536502 1537548 . - . ID=Physo127382;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10362;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1536502 1537548 . - . ID=Physo127382;Parent=Physo127382;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1536502 1537548 . - 0 ID=Physo127382;Parent=Physo127382;rank=1 scaffold_1 . exon 1536502 1537548 . - . ID=Physo127382.1;Parent=Physo127382;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1535869 1536363 . + . ID=Physo155267;biotype=protein_coding;external_name=C_scaffold_1000071;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1535869 1536363 . + . ID=Physo155267;Parent=Physo155267;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1535869 1536014 . + 0 ID=Physo155267;Parent=Physo155267;rank=1 scaffold_1 . exon 1535869 1536014 . + . ID=Physo155267.1;Parent=Physo155267;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1536099 1536150 . + 0 ID=Physo155267;Parent=Physo155267;rank=2 scaffold_1 . exon 1536099 1536150 . + . ID=Physo155267.2;Parent=Physo155267;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1536187 1536363 . + 0 ID=Physo155267;Parent=Physo155267;rank=3 scaffold_1 . exon 1536187 1536363 . + . ID=Physo155267.3;Parent=Physo155267;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 1537776 1541440 . + . ID=Physo155269;biotype=protein_coding;external_name=C_scaffold_1000073;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1537776 1541440 . + . ID=Physo155269;Parent=Physo155269;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1537776 1538186 . + 0 ID=Physo155269;Parent=Physo155269;rank=1 scaffold_1 . exon 1537776 1538186 . + . ID=Physo155269.1;Parent=Physo155269;constitutive=1;rank=1 scaffold_1 . CDS 1538241 1538550 . + 0 ID=Physo155269;Parent=Physo155269;rank=2 scaffold_1 . CDS 1538578 1538733 . + 0 ID=Physo155269;Parent=Physo155269;rank=3 scaffold_1 . CDS 1538908 1540502 . + 0 ID=Physo155269;Parent=Physo155269;rank=4 scaffold_1 . CDS 1540560 1540646 . + 0 ID=Physo155269;Parent=Physo155269;rank=5 scaffold_1 . CDS 1540715 1540960 . + 0 ID=Physo155269;Parent=Physo155269;rank=6 scaffold_1 . CDS 1541015 1541440 . + 0 ID=Physo155269;Parent=Physo155269;rank=7 scaffold_1 . biological_region 1538439 1538439 0.999 - . logic_name=eponine scaffold_1 . biological_region 1538611 1538614 0.999 - . logic_name=eponine scaffold_1 . biological_region 1538631 1538636 0.999 - . logic_name=eponine scaffold_1 . biological_region 1539369 1539374 0.999 - . logic_name=eponine scaffold_1 . biological_region 1539820 1539821 0.999 + . logic_name=eponine scaffold_1 . biological_region 1541333 1541336 0.999 + . logic_name=eponine scaffold_1 . biological_region 1541767 1541769 0.999 + . logic_name=eponine scaffold_1 . biological_region 1541851 1541852 0.999 - . logic_name=eponine scaffold_1 . biological_region 1542054 1542054 0.999 - . logic_name=eponine scaffold_1 . biological_region 1542878 1542883 0.999 + . logic_name=eponine scaffold_1 . biological_region 1542936 1542937 0.999 + . logic_name=eponine scaffold_1 . biological_region 1542953 1542954 0.999 - . logic_name=eponine scaffold_1 . biological_region 1543446 1543448 0.999 + . logic_name=eponine scaffold_1 . biological_region 1543616 1543620 0.999 + . logic_name=eponine scaffold_1 . biological_region 1543629 1543632 0.999 + . logic_name=eponine scaffold_1 . biological_region 1543707 1543713 0.999 - . logic_name=eponine scaffold_1 . biological_region 1546325 1546326 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1541461 1544152 . - . ID=Physo127384;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10364;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1541461 1544152 . - . ID=Physo127384;Parent=Physo127384;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1541461 1543899 . - . ID=Physo127384.2;Parent=Physo127384;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_1 . CDS 1541502 1543802 . - 0 ID=Physo127384;Parent=Physo127384;rank=1 scaffold_1 . exon 1544148 1544152 . - . ID=Physo127384.1;Parent=Physo127384;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1544628 1546290 . - . ID=Physo127385;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10365;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1544628 1546290 . - . ID=Physo127385;Parent=Physo127385;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1544628 1544732 . - 0 ID=Physo127385;Parent=Physo127385;rank=7 scaffold_1 . exon 1544628 1544732 . - . ID=Physo127385.7;Parent=Physo127385;constitutive=1;rank=7 scaffold_1 . CDS 1544903 1544970 . - 0 ID=Physo127385;Parent=Physo127385;rank=6 scaffold_1 . exon 1544903 1544970 . - . ID=Physo127385.6;Parent=Physo127385;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 1545081 1545123 . - 0 ID=Physo127385;Parent=Physo127385;rank=5 scaffold_1 . exon 1545081 1545123 . - . ID=Physo127385.5;Parent=Physo127385;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 1545208 1545492 . - 0 ID=Physo127385;Parent=Physo127385;rank=4 scaffold_1 . exon 1545208 1545492 . - . ID=Physo127385.4;Parent=Physo127385;constitutive=1;rank=4 scaffold_1 . CDS 1545583 1545660 . - 0 ID=Physo127385;Parent=Physo127385;rank=3 scaffold_1 . exon 1545583 1545660 . - . ID=Physo127385.3;Parent=Physo127385;constitutive=1;rank=3 scaffold_1 . CDS 1545796 1546015 . - 0 ID=Physo127385;Parent=Physo127385;rank=2 scaffold_1 . exon 1545796 1546015 . - . ID=Physo127385.2;Parent=Physo127385;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1546133 1546290 . - 0 ID=Physo127385;Parent=Physo127385;rank=1 scaffold_1 . exon 1546133 1546290 . - . ID=Physo127385.1;Parent=Physo127385;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1546575 1548620 . - . ID=Physo127386;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10366;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1546575 1548620 . - . ID=Physo127386;Parent=Physo127386;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1546575 1546801 . - 0 ID=Physo127386;Parent=Physo127386;rank=6 scaffold_1 . exon 1546575 1546801 . - . ID=Physo127386.6;Parent=Physo127386;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . CDS 1546883 1546986 . - 0 ID=Physo127386;Parent=Physo127386;rank=5 scaffold_1 . exon 1546883 1546986 . - . ID=Physo127386.5;Parent=Physo127386;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=5 scaffold_1 . CDS 1547061 1547170 . - 0 ID=Physo127386;Parent=Physo127386;rank=4 scaffold_1 . exon 1547061 1547170 . - . ID=Physo127386.4;Parent=Physo127386;constitutive=1;ensembl_end_phase=2;rank=4 scaffold_1 . CDS 1547245 1547745 . - 0 ID=Physo127386;Parent=Physo127386;rank=3 scaffold_1 . exon 1547245 1547745 . - . ID=Physo127386.3;Parent=Physo127386;constitutive=1;rank=3 scaffold_1 . CDS 1547773 1548414 . - 0 ID=Physo127386;Parent=Physo127386;rank=2 scaffold_1 . exon 1547773 1548414 . - . ID=Physo127386.2;Parent=Physo127386;constitutive=1;rank=2 scaffold_1 . CDS 1548594 1548620 . - 0 ID=Physo127386;Parent=Physo127386;rank=1 scaffold_1 . exon 1538241 1538550 . + . ID=Physo155269.2;Parent=Physo155269;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . exon 1538578 1538733 . + . ID=Physo155269.3;Parent=Physo155269;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=3 scaffold_1 . exon 1538908 1540502 . + . ID=Physo155269.4;Parent=Physo155269;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . exon 1540560 1540646 . + . ID=Physo155269.5;Parent=Physo155269;constitutive=1;rank=5 scaffold_1 . exon 1540715 1540960 . + . ID=Physo155269.6;Parent=Physo155269;constitutive=1;rank=6 scaffold_1 . exon 1541015 1541440 . + . ID=Physo155269.7;Parent=Physo155269;constitutive=1;rank=7 scaffold_1 . repeat_region 1549420 1549450 . ? . description=trf scaffold_1 . repeat_region 1552099 1552385 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1557175 1558906 . - . ID=Physo110086;biotype=protein_coding;external_name=estExt_Genewise1.C_10324;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1557175 1558906 . - . ID=Physo110086;Parent=Physo110086;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1557175 1557231 . - 0 ID=Physo110086;Parent=Physo110086;rank=10 scaffold_1 . exon 1557175 1557231 . - . ID=Physo110086.11;Parent=Physo110086;constitutive=1;rank=11 scaffold_1 . CDS 1557297 1557353 . - 0 ID=Physo110086;Parent=Physo110086;rank=9 scaffold_1 . exon 1557297 1557353 . - . ID=Physo110086.10;Parent=Physo110086;constitutive=1;rank=10 scaffold_1 . CDS 1557447 1557509 . - 0 ID=Physo110086;Parent=Physo110086;rank=8 scaffold_1 . exon 1557447 1557509 . - . ID=Physo110086.9;Parent=Physo110086;constitutive=1;rank=9 scaffold_1 . CDS 1557578 1557649 . - 0 ID=Physo110086;Parent=Physo110086;rank=7 scaffold_1 . exon 1557578 1557649 . - . ID=Physo110086.8;Parent=Physo110086;constitutive=1;rank=8 scaffold_1 . CDS 1557714 1557845 . - 0 ID=Physo110086;Parent=Physo110086;rank=6 scaffold_1 . exon 1557714 1557845 . - . ID=Physo110086.7;Parent=Physo110086;constitutive=1;rank=7 scaffold_1 . CDS 1557920 1557962 . - 0 ID=Physo110086;Parent=Physo110086;rank=5 scaffold_1 . exon 1557920 1557962 . - . ID=Physo110086.6;Parent=Physo110086;constitutive=1;ensembl_phase=2;rank=6 scaffold_1 . CDS 1558033 1558076 . - 0 ID=Physo110086;Parent=Physo110086;rank=4 scaffold_1 . CDS 1558143 1558257 . - 0 ID=Physo110086;Parent=Physo110086;rank=3 scaffold_1 . CDS 1558350 1558414 . - 0 ID=Physo110086;Parent=Physo110086;rank=2 scaffold_1 . CDS 1558567 1558716 . - 0 ID=Physo110086;Parent=Physo110086;rank=1 scaffold_1 . exon 1548594 1548620 . - . ID=Physo127386.1;Parent=Physo127386;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1549051 1550008 . + . ID=Physo127387;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10367;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1549051 1550008 . + . ID=Physo127387;Parent=Physo127387;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1549051 1549923 . + 0 ID=Physo127387;Parent=Physo127387;rank=1 scaffold_1 . exon 1549051 1550008 . + . ID=Physo127387.1;Parent=Physo127387;constitutive=1;ensembl_end_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1555432 1556271 . - . ID=Physo127388;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10368;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1555432 1556271 . - . ID=Physo127388;Parent=Physo127388;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1555432 1555551 . - 0 ID=Physo127388;Parent=Physo127388;rank=4 scaffold_1 . exon 1555432 1555551 . - . ID=Physo127388.4;Parent=Physo127388;constitutive=1;rank=4 scaffold_1 . CDS 1555771 1555912 . - 0 ID=Physo127388;Parent=Physo127388;rank=3 scaffold_1 . exon 1555771 1555912 . - . ID=Physo127388.3;Parent=Physo127388;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1555990 1556072 . - 0 ID=Physo127388;Parent=Physo127388;rank=2 scaffold_1 . exon 1555990 1556072 . - . ID=Physo127388.2;Parent=Physo127388;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . CDS 1556146 1556271 . - 0 ID=Physo127388;Parent=Physo127388;rank=1 scaffold_1 . exon 1556146 1556271 . - . ID=Physo127388.1;Parent=Physo127388;constitutive=1;rank=1 scaffold_1 . repeat_region 1559118 1559128 . ? . description=dust scaffold_1 . biological_region 1560978 1560981 0.999 + . logic_name=eponine scaffold_1 . biological_region 1561014 1561023 0.999 - . logic_name=eponine scaffold_1 . biological_region 1561151 1561155 0.999 - . logic_name=eponine scaffold_1 . biological_region 1561443 1561446 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1565288 1565337 . ? . description=dust scaffold_1 . biological_region 1567285 1567293 0.999 + . logic_name=eponine scaffold_1 . biological_region 1567355 1567363 0.999 - . logic_name=eponine scaffold_1 . repeat_region 1567422 1567477 . ? . description=dust scaffold_1 . biological_region 1567827 1567834 0.999 - . logic_name=eponine scaffold_1 . biological_region 1567887 1567887 0.999 + . logic_name=eponine scaffold_1 . exon 1558033 1558076 . - . ID=Physo110086.5;Parent=Physo110086;constitutive=1;ensembl_end_phase=2;rank=5 scaffold_1 . exon 1558143 1558257 . - . ID=Physo110086.4;Parent=Physo110086;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . exon 1558350 1558414 . - . ID=Physo110086.3;Parent=Physo110086;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . exon 1558567 1558731 . - . ID=Physo110086.2;Parent=Physo110086;constitutive=1;ensembl_phase=-1;rank=2 scaffold_1 . exon 1558862 1558906 . - . ID=Physo110086.1;Parent=Physo110086;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1559165 1565994 . + . ID=Physo127390;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10370;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1559165 1565994 . + . ID=Physo127390;Parent=Physo127390;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1559165 1559335 . + 0 ID=Physo127390;Parent=Physo127390;rank=1 scaffold_1 . exon 1559165 1559335 . + . ID=Physo127390.1;Parent=Physo127390;constitutive=1;rank=1 scaffold_1 . CDS 1559368 1559538 . + 0 ID=Physo127390;Parent=Physo127390;rank=2 scaffold_1 . exon 1559368 1559538 . + . ID=Physo127390.2;Parent=Physo127390;constitutive=1;rank=2 scaffold_1 . CDS 1559633 1565224 . + 0 ID=Physo127390;Parent=Physo127390;rank=3 scaffold_1 . exon 1559633 1565224 . + . ID=Physo127390.3;Parent=Physo127390;constitutive=1;rank=3 scaffold_1 . CDS 1565377 1565994 . + 0 ID=Physo127390;Parent=Physo127390;rank=4 scaffold_1 . exon 1565377 1565994 . + . ID=Physo127390.4;Parent=Physo127390;constitutive=1;rank=4 scaffold_1 ensembl protein_coding_gene 1566155 1567126 . - . ID=Physo127391;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10371;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1566155 1567126 . - . ID=Physo127391;Parent=Physo127391;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1566155 1566501 . - . ID=Physo127391.3;Parent=Physo127391;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1 . CDS 1566199 1566501 . - 0 ID=Physo127391;Parent=Physo127391;rank=3 scaffold_1 . CDS 1566565 1566682 . - 0 ID=Physo127391;Parent=Physo127391;rank=2 scaffold_1 . exon 1566565 1566682 . - . ID=Physo127391.2;Parent=Physo127391;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1567029 1567126 . - 0 ID=Physo127391;Parent=Physo127391;rank=1 scaffold_1 . exon 1567029 1567126 . - . ID=Physo127391.1;Parent=Physo127391;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1567356 1568950 . + . ID=Physo155277;biotype=protein_coding;external_name=C_scaffold_1000081;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1567356 1568950 . + . ID=Physo155277;Parent=Physo155277;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1567356 1567680 . + 0 ID=Physo155277;Parent=Physo155277;rank=1 scaffold_1 . exon 1567356 1567680 . + . ID=Physo155277.1;Parent=Physo155277;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1567744 1568510 . + 0 ID=Physo155277;Parent=Physo155277;rank=2 scaffold_1 . exon 1567744 1568510 . + . ID=Physo155277.2;Parent=Physo155277;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1568600 1568950 . + 0 ID=Physo155277;Parent=Physo155277;rank=3 scaffold_1 . repeat_region 1574858 1575040 . + . description=GypsyPi-1c_LTR scaffold_1 . repeat_region 1575041 1577039 . + . description=GypsyPi-1c_I-int scaffold_1 . repeat_region 1576874 1577039 . ? . description=trf scaffold_1 . repeat_region 1577018 1577178 . ? . description=trf scaffold_1 . repeat_region 1577068 1577200 . ? . description=trf scaffold_1 . repeat_region 1577321 1578444 . + . description=GypsyPi-1c_I-int scaffold_1 ensembl protein_coding_gene 1575128 1576129 . + . ID=Physo127396;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10376;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1575128 1576129 . + . ID=Physo127396;Parent=Physo127396;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1575128 1576129 . + 0 ID=Physo127396;Parent=Physo127396;rank=1 scaffold_1 . exon 1575128 1576129 . + . ID=Physo127396.1;Parent=Physo127396;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1576457 1580068 . + . ID=Physo127397;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10377;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1576457 1580068 . + . ID=Physo127397;Parent=Physo127397;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1576457 1578880 . + 0 ID=Physo127397;Parent=Physo127397;rank=1 scaffold_1 . exon 1576457 1578880 . + . ID=Physo127397.1;Parent=Physo127397;constitutive=1;rank=1 scaffold_1 . CDS 1578953 1580068 . + 0 ID=Physo127397;Parent=Physo127397;rank=2 scaffold_1 . exon 1568600 1568950 . + . ID=Physo155277.3;Parent=Physo155277;constitutive=1;rank=3 scaffold_1 ensembl protein_coding_gene 1569156 1569894 . - . ID=Physo155279;biotype=protein_coding;external_name=C_scaffold_1000083;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1569156 1569894 . - . ID=Physo155279;Parent=Physo155279;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1569156 1569590 . - 0 ID=Physo155279;Parent=Physo155279;rank=2 scaffold_1 . exon 1569156 1569590 . - . ID=Physo155279.2;Parent=Physo155279;constitutive=1;rank=2 scaffold_1 . CDS 1569691 1569894 . - 0 ID=Physo155279;Parent=Physo155279;rank=1 scaffold_1 . exon 1569691 1569894 . - . ID=Physo155279.1;Parent=Physo155279;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1570630 1572138 . + . ID=Physo155281;biotype=protein_coding;external_name=C_scaffold_1000085;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1570630 1572138 . + . ID=Physo155281;Parent=Physo155281;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1570630 1570726 . + 0 ID=Physo155281;Parent=Physo155281;rank=1 scaffold_1 . exon 1570630 1570726 . + . ID=Physo155281.1;Parent=Physo155281;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1570793 1571192 . + 0 ID=Physo155281;Parent=Physo155281;rank=2 scaffold_1 . exon 1570793 1571192 . + . ID=Physo155281.2;Parent=Physo155281;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 1571261 1571457 . + 0 ID=Physo155281;Parent=Physo155281;rank=3 scaffold_1 . exon 1571261 1571457 . + . ID=Physo155281.3;Parent=Physo155281;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1571535 1571741 . + 0 ID=Physo155281;Parent=Physo155281;rank=4 scaffold_1 . exon 1571535 1571741 . + . ID=Physo155281.4;Parent=Physo155281;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1571819 1572138 . + 0 ID=Physo155281;Parent=Physo155281;rank=5 scaffold_1 . exon 1571819 1572138 . + . ID=Physo155281.5;Parent=Physo155281;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 ensembl protein_coding_gene 1572546 1573628 . + . ID=Physo155282;biotype=protein_coding;external_name=C_scaffold_1000086;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1572546 1573628 . + . ID=Physo155282;Parent=Physo155282;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1572546 1573628 . + 0 ID=Physo155282;Parent=Physo155282;rank=1 scaffold_1 . exon 1572546 1573628 . + . ID=Physo155282.1;Parent=Physo155282;constitutive=1;rank=1 scaffold_1 . biological_region 1579826 1579830 0.999 - . logic_name=eponine scaffold_1 . biological_region 1580510 1580511 0.999 + . logic_name=eponine scaffold_1 . biological_region 1580535 1580538 0.999 - . logic_name=eponine scaffold_1 . biological_region 1582339 1582344 0.999 - . logic_name=eponine scaffold_1 . biological_region 1582537 1582540 0.999 - . logic_name=eponine scaffold_1 . repeat_region 1586896 1586973 . ? . description=dust scaffold_1 . repeat_region 1586995 1587080 . ? . description=dust scaffold_1 . repeat_region 1587119 1587182 . ? . description=dust scaffold_1 . exon 1578953 1580068 . + . ID=Physo127397.2;Parent=Physo127397;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 1580388 1582606 . - . ID=Physo127398;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10378;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1580388 1582606 . - . ID=Physo127398;Parent=Physo127398;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1580388 1581445 . - 0 ID=Physo127398;Parent=Physo127398;rank=2 scaffold_1 . exon 1580388 1581445 . - . ID=Physo127398.2;Parent=Physo127398;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1581583 1582606 . - 0 ID=Physo127398;Parent=Physo127398;rank=1 scaffold_1 . exon 1581583 1582606 . - . ID=Physo127398.1;Parent=Physo127398;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1586221 1587426 . - . ID=Physo127399;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10379;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1586221 1587426 . - . ID=Physo127399;Parent=Physo127399;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1586221 1586531 . - 0 ID=Physo127399;Parent=Physo127399;rank=3 scaffold_1 . exon 1586221 1586531 . - . ID=Physo127399.3;Parent=Physo127399;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1586620 1587327 . - 0 ID=Physo127399;Parent=Physo127399;rank=2 scaffold_1 . exon 1586620 1587327 . - . ID=Physo127399.2;Parent=Physo127399;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1587384 1587426 . - 0 ID=Physo127399;Parent=Physo127399;rank=1 scaffold_1 . exon 1587384 1587426 . - . ID=Physo127399.1;Parent=Physo127399;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . repeat_region 1589735 1589762 . ? . description=trf scaffold_1 ensembl protein_coding_gene 1590100 1593006 . - . ID=Physo110093;biotype=protein_coding;external_name=estExt_Genewise1.C_10331;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1590100 1593006 . - . ID=Physo110093;Parent=Physo110093;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1590100 1590456 . - 0 ID=Physo110093;Parent=Physo110093;rank=3 scaffold_1 . exon 1590100 1590456 . - . ID=Physo110093.5;Parent=Physo110093;constitutive=1;rank=5 scaffold_1 . CDS 1590520 1591930 . - 0 ID=Physo110093;Parent=Physo110093;rank=2 scaffold_1 . exon 1590520 1591930 . - . ID=Physo110093.4;Parent=Physo110093;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1592012 1592637 . - 0 ID=Physo110093;Parent=Physo110093;rank=1 scaffold_1 . exon 1592012 1592670 . - . ID=Physo110093.3;Parent=Physo110093;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;rank=3 scaffold_1 . exon 1592738 1592848 . - . ID=Physo110093.2;Parent=Physo110093;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=2 scaffold_1 . exon 1592926 1593006 . - . ID=Physo110093.1;Parent=Physo110093;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1588249 1589499 . + . ID=Physo127400;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10380;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1588249 1589499 . + . ID=Physo127400;Parent=Physo127400;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1588249 1589499 . + 0 ID=Physo127400;Parent=Physo127400;rank=1 scaffold_1 . exon 1588249 1589499 . + . ID=Physo127400.1;Parent=Physo127400;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1597338 1598767 . - . ID=Physo127405;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10385;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1597338 1598767 . - . ID=Physo127405;Parent=Physo127405;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1597338 1597697 . - 0 ID=Physo127405;Parent=Physo127405;rank=4 scaffold_1 . exon 1597338 1597697 . - . ID=Physo127405.4;Parent=Physo127405;constitutive=1;rank=4 scaffold_1 . CDS 1597786 1598072 . - 0 ID=Physo127405;Parent=Physo127405;rank=3 scaffold_1 . exon 1597786 1598072 . - . ID=Physo127405.3;Parent=Physo127405;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1598103 1598511 . - 0 ID=Physo127405;Parent=Physo127405;rank=2 scaffold_1 . CDS 1598584 1598709 . - 0 ID=Physo127405;Parent=Physo127405;rank=1 scaffold_1 ensembl protein_coding_gene 1593715 1597245 . + . ID=Physo155284;biotype=protein_coding;external_name=C_scaffold_1000088;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1593715 1597245 . + . ID=Physo155284;Parent=Physo155284;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1593715 1594384 . + 0 ID=Physo155284;Parent=Physo155284;rank=1 scaffold_1 . exon 1593715 1594384 . + . ID=Physo155284.1;Parent=Physo155284;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1594508 1594635 . + 0 ID=Physo155284;Parent=Physo155284;rank=2 scaffold_1 . exon 1594508 1594635 . + . ID=Physo155284.2;Parent=Physo155284;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1594717 1595053 . + 0 ID=Physo155284;Parent=Physo155284;rank=3 scaffold_1 . exon 1594717 1595053 . + . ID=Physo155284.3;Parent=Physo155284;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . CDS 1595093 1596051 . + 0 ID=Physo155284;Parent=Physo155284;rank=4 scaffold_1 . exon 1595093 1596051 . + . ID=Physo155284.4;Parent=Physo155284;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1596127 1596301 . + 0 ID=Physo155284;Parent=Physo155284;rank=5 scaffold_1 . exon 1596127 1596301 . + . ID=Physo155284.5;Parent=Physo155284;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 1596635 1597245 . + 0 ID=Physo155284;Parent=Physo155284;rank=6 scaffold_1 . exon 1596635 1597245 . + . ID=Physo155284.6;Parent=Physo155284;constitutive=1;ensembl_phase=1;rank=6 scaffold_1 . biological_region 1602158 1602160 0.999 + . logic_name=eponine scaffold_1 . biological_region 1602172 1602180 0.999 - . logic_name=eponine scaffold_1 . biological_region 1603035 1603036 0.999 - . logic_name=eponine scaffold_1 . biological_region 1605048 1605050 0.999 - . logic_name=eponine scaffold_1 . biological_region 1606251 1606253 0.999 - . logic_name=eponine scaffold_1 . biological_region 1606569 1606569 0.999 - . logic_name=eponine scaffold_1 . biological_region 1607054 1607061 0.999 + . logic_name=eponine scaffold_1 . biological_region 1607090 1607092 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1599100 1599972 . + . ID=Physo108165;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10030;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1599100 1599972 . + . ID=Physo108165;Parent=Physo108165;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1599100 1599249 . + . ID=Physo108165.1;Parent=Physo108165;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1599159 1599249 . + 0 ID=Physo108165;Parent=Physo108165;rank=1 scaffold_1 . CDS 1599323 1599848 . + 0 ID=Physo108165;Parent=Physo108165;rank=2 scaffold_1 . exon 1599323 1599848 . + . ID=Physo108165.2;Parent=Physo108165;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=2 scaffold_1 . CDS 1599936 1599972 . + 0 ID=Physo108165;Parent=Physo108165;rank=3 scaffold_1 . exon 1599936 1599972 . + . ID=Physo108165.3;Parent=Physo108165;constitutive=1;ensembl_phase=2;rank=3 scaffold_1 . exon 1598103 1598511 . - . ID=Physo127405.2;Parent=Physo127405;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . exon 1598584 1598767 . - . ID=Physo127405.1;Parent=Physo127405;constitutive=1;ensembl_phase=-1;rank=1 scaffold_1 ensembl protein_coding_gene 1602055 1605887 . + . ID=Physo127408;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10388;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1602055 1605887 . + . ID=Physo127408;Parent=Physo127408;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1602055 1602778 . + 0 ID=Physo127408;Parent=Physo127408;rank=1 scaffold_1 . exon 1602055 1602778 . + . ID=Physo127408.1;Parent=Physo127408;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 . CDS 1602853 1603109 . + 0 ID=Physo127408;Parent=Physo127408;rank=2 scaffold_1 . exon 1602853 1603109 . + . ID=Physo127408.2;Parent=Physo127408;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1603183 1603796 . + 0 ID=Physo127408;Parent=Physo127408;rank=3 scaffold_1 . exon 1603183 1603796 . + . ID=Physo127408.3;Parent=Physo127408;constitutive=1;ensembl_end_phase=2;rank=3 scaffold_1 . CDS 1603879 1604143 . + 0 ID=Physo127408;Parent=Physo127408;rank=4 scaffold_1 . exon 1603879 1604143 . + . ID=Physo127408.4;Parent=Physo127408;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 . CDS 1604205 1604448 . + 0 ID=Physo127408;Parent=Physo127408;rank=5 scaffold_1 . exon 1604205 1604448 . + . ID=Physo127408.5;Parent=Physo127408;constitutive=1;ensembl_end_phase=1;rank=5 scaffold_1 . CDS 1604984 1605771 . + 0 ID=Physo127408;Parent=Physo127408;rank=6 scaffold_1 . exon 1604984 1605887 . + . ID=Physo127408.6;Parent=Physo127408;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;rank=6 scaffold_1 ensembl protein_coding_gene 1607028 1608576 . - . ID=Physo127410;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10390;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1607028 1608576 . - . ID=Physo127410;Parent=Physo127410;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1607028 1607575 . - 0 ID=Physo127410;Parent=Physo127410;rank=4 scaffold_1 . exon 1607028 1607575 . - . ID=Physo127410.4;Parent=Physo127410;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . CDS 1607646 1607905 . - 0 ID=Physo127410;Parent=Physo127410;rank=3 scaffold_1 . exon 1607646 1607905 . - . ID=Physo127410.3;Parent=Physo127410;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=3 scaffold_1 . CDS 1607975 1608024 . - 0 ID=Physo127410;Parent=Physo127410;rank=2 scaffold_1 . CDS 1608121 1608576 . - 0 ID=Physo127410;Parent=Physo127410;rank=1 scaffold_1 ensembl protein_coding_gene 1600259 1601754 . - . ID=Physo155286;biotype=protein_coding;external_name=C_scaffold_1000090;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1600259 1601754 . - . ID=Physo155286;Parent=Physo155286;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1600259 1600567 . - 0 ID=Physo155286;Parent=Physo155286;rank=6 scaffold_1 . exon 1600259 1600567 . - . ID=Physo155286.6;Parent=Physo155286;constitutive=1;rank=6 scaffold_1 . CDS 1600641 1600744 . - 0 ID=Physo155286;Parent=Physo155286;rank=5 scaffold_1 . exon 1600641 1600744 . - . ID=Physo155286.5;Parent=Physo155286;constitutive=1;ensembl_phase=1;rank=5 scaffold_1 . CDS 1600822 1600948 . - 0 ID=Physo155286;Parent=Physo155286;rank=4 scaffold_1 . exon 1600822 1600948 . - . ID=Physo155286.4;Parent=Physo155286;constitutive=1;ensembl_end_phase=1;rank=4 scaffold_1 . CDS 1601020 1601177 . - 0 ID=Physo155286;Parent=Physo155286;rank=3 scaffold_1 . exon 1601020 1601177 . - . ID=Physo155286.3;Parent=Physo155286;constitutive=1;ensembl_phase=1;rank=3 scaffold_1 . CDS 1601256 1601499 . - 0 ID=Physo155286;Parent=Physo155286;rank=2 scaffold_1 . exon 1601256 1601499 . - . ID=Physo155286.2;Parent=Physo155286;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1601578 1601754 . - 0 ID=Physo155286;Parent=Physo155286;rank=1 scaffold_1 . exon 1601578 1601754 . - . ID=Physo155286.1;Parent=Physo155286;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1606205 1606879 . + . ID=Physo155288;biotype=protein_coding;external_name=C_scaffold_1000092;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1606205 1606879 . + . ID=Physo155288;Parent=Physo155288;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1606205 1606879 . + 0 ID=Physo155288;Parent=Physo155288;rank=1 scaffold_1 . exon 1606205 1606879 . + . ID=Physo155288.1;Parent=Physo155288;constitutive=1;rank=1 scaffold_1 . repeat_region 1610533 1610596 . ? . description=dust scaffold_1 . repeat_region 1613757 1613788 . ? . description=trf scaffold_1 . repeat_region 1613995 1614018 . ? . description=trf scaffold_1 . repeat_region 1613999 1614018 . ? . description=dust scaffold_1 ensembl protein_coding_gene 1612284 1612891 . + . ID=Physo108166;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10031;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1612284 1612891 . + . ID=Physo108166;Parent=Physo108166;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1612284 1612891 . + . ID=Physo108166.1;Parent=Physo108166;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1612322 1612708 . + 0 ID=Physo108166;Parent=Physo108166;rank=1 scaffold_1 . exon 1607975 1608024 . - . ID=Physo127410.2;Parent=Physo127410;constitutive=1;ensembl_end_phase=2;rank=2 scaffold_1 . exon 1608121 1608576 . - . ID=Physo127410.1;Parent=Physo127410;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1608938 1610725 . - . ID=Physo127411;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10391;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1608938 1610725 . - . ID=Physo127411;Parent=Physo127411;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1608938 1610725 . - 0 ID=Physo127411;Parent=Physo127411;rank=1 scaffold_1 . exon 1608938 1610725 . - . ID=Physo127411.1;Parent=Physo127411;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1612958 1613583 . - . ID=Physo127413;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10393;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1612958 1613583 . - . ID=Physo127413;Parent=Physo127413;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1612958 1613271 . - 0 ID=Physo127413;Parent=Physo127413;rank=2 scaffold_1 . exon 1612958 1613271 . - . ID=Physo127413.2;Parent=Physo127413;constitutive=1;ensembl_phase=1;rank=2 scaffold_1 . CDS 1613352 1613583 . - 0 ID=Physo127413;Parent=Physo127413;rank=1 scaffold_1 . exon 1613352 1613583 . - . ID=Physo127413.1;Parent=Physo127413;constitutive=1;ensembl_end_phase=1;rank=1 scaffold_1 ensembl protein_coding_gene 1613968 1615833 . + . ID=Physo127414;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10394;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1613968 1615833 . + . ID=Physo127414;Parent=Physo127414;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1613968 1614662 . + 0 ID=Physo127414;Parent=Physo127414;rank=1 scaffold_1 . exon 1613968 1614662 . + . ID=Physo127414.1;Parent=Physo127414;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1614765 1615833 . + 0 ID=Physo127414;Parent=Physo127414;rank=2 scaffold_1 . exon 1614765 1615833 . + . ID=Physo127414.2;Parent=Physo127414;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 1615924 1617956 . + . ID=Physo127415;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10395;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1615924 1617956 . + . ID=Physo127415;Parent=Physo127415;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1615924 1617729 . + 0 ID=Physo127415;Parent=Physo127415;rank=1 scaffold_1 . exon 1615924 1617729 . + . ID=Physo127415.1;Parent=Physo127415;constitutive=1;rank=1 scaffold_1 . CDS 1617810 1617956 . + 0 ID=Physo127415;Parent=Physo127415;rank=2 scaffold_1 . exon 1617810 1617956 . + . ID=Physo127415.2;Parent=Physo127415;constitutive=1;rank=2 scaffold_1 . biological_region 1619609 1619614 0.999 + . logic_name=eponine scaffold_1 . biological_region 1619644 1619646 0.999 + . logic_name=eponine scaffold_1 . biological_region 1619653 1619657 0.999 - . logic_name=eponine scaffold_1 . biological_region 1626475 1626477 0.999 - . logic_name=eponine scaffold_1 . biological_region 1626717 1626720 0.999 + . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1619423 1620411 . + . ID=Physo127416;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10396;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1619423 1620411 . + . ID=Physo127416;Parent=Physo127416;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1619423 1619455 . + 0 ID=Physo127416;Parent=Physo127416;rank=1 scaffold_1 . exon 1619423 1619455 . + . ID=Physo127416.1;Parent=Physo127416;constitutive=1;rank=1 scaffold_1 . CDS 1619534 1619705 . + 0 ID=Physo127416;Parent=Physo127416;rank=2 scaffold_1 . exon 1619534 1619705 . + . ID=Physo127416.2;Parent=Physo127416;constitutive=1;ensembl_end_phase=1;rank=2 scaffold_1 . CDS 1619777 1619918 . + 0 ID=Physo127416;Parent=Physo127416;rank=3 scaffold_1 . exon 1619777 1619918 . + . ID=Physo127416.3;Parent=Physo127416;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=3 scaffold_1 . CDS 1619994 1620411 . + 0 ID=Physo127416;Parent=Physo127416;rank=4 scaffold_1 . exon 1619994 1620411 . + . ID=Physo127416.4;Parent=Physo127416;constitutive=1;ensembl_phase=2;rank=4 scaffold_1 ensembl protein_coding_gene 1620908 1635434 . - . ID=Physo155290;biotype=protein_coding;external_name=C_scaffold_1000094;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1620908 1635434 . - . ID=Physo155290;Parent=Physo155290;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1620908 1624048 . - 0 ID=Physo155290;Parent=Physo155290;rank=21 scaffold_1 . exon 1620908 1624048 . - . ID=Physo155290.21;Parent=Physo155290;constitutive=1;rank=21 scaffold_1 . CDS 1624082 1624268 . - 0 ID=Physo155290;Parent=Physo155290;rank=20 scaffold_1 . exon 1624082 1624268 . - . ID=Physo155290.20;Parent=Physo155290;constitutive=1;ensembl_phase=2;rank=20 scaffold_1 . CDS 1624317 1624668 . - 0 ID=Physo155290;Parent=Physo155290;rank=19 scaffold_1 . exon 1624317 1624668 . - . ID=Physo155290.19;Parent=Physo155290;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=19 scaffold_1 . CDS 1625038 1625336 . - 0 ID=Physo155290;Parent=Physo155290;rank=18 scaffold_1 . exon 1625038 1625336 . - . ID=Physo155290.18;Parent=Physo155290;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=18 scaffold_1 . CDS 1625370 1625974 . - 0 ID=Physo155290;Parent=Physo155290;rank=17 scaffold_1 . exon 1625370 1625974 . - . ID=Physo155290.17;Parent=Physo155290;constitutive=1;ensembl_end_phase=2;rank=17 scaffold_1 . CDS 1626029 1626518 . - 0 ID=Physo155290;Parent=Physo155290;rank=16 scaffold_1 . exon 1626029 1626518 . - . ID=Physo155290.16;Parent=Physo155290;constitutive=1;ensembl_phase=2;rank=16 scaffold_1 . CDS 1626612 1627136 . - 0 ID=Physo155290;Parent=Physo155290;rank=15 scaffold_1 . exon 1626612 1627136 . - . ID=Physo155290.15;Parent=Physo155290;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=15 scaffold_1 . CDS 1627476 1627786 . - 0 ID=Physo155290;Parent=Physo155290;rank=14 scaffold_1 . exon 1627476 1627786 . - . ID=Physo155290.14;Parent=Physo155290;constitutive=1;ensembl_end_phase=2;rank=14 scaffold_1 . CDS 1627832 1628102 . - 0 ID=Physo155290;Parent=Physo155290;rank=13 scaffold_1 . exon 1627832 1628102 . - . ID=Physo155290.13;Parent=Physo155290;constitutive=1;ensembl_phase=2;rank=13 scaffold_1 . CDS 1628217 1628366 . - 0 ID=Physo155290;Parent=Physo155290;rank=12 scaffold_1 . CDS 1628499 1628652 . - 0 ID=Physo155290;Parent=Physo155290;rank=11 scaffold_1 . CDS 1628728 1628936 . - 0 ID=Physo155290;Parent=Physo155290;rank=10 scaffold_1 . CDS 1629210 1629349 . - 0 ID=Physo155290;Parent=Physo155290;rank=9 scaffold_1 . CDS 1629545 1629813 . - 0 ID=Physo155290;Parent=Physo155290;rank=8 scaffold_1 . CDS 1629883 1630138 . - 0 ID=Physo155290;Parent=Physo155290;rank=7 scaffold_1 . CDS 1630223 1630342 . - 0 ID=Physo155290;Parent=Physo155290;rank=6 scaffold_1 . CDS 1630373 1630771 . - 0 ID=Physo155290;Parent=Physo155290;rank=5 scaffold_1 . CDS 1631147 1632459 . - 0 ID=Physo155290;Parent=Physo155290;rank=4 scaffold_1 . CDS 1632508 1634977 . - 0 ID=Physo155290;Parent=Physo155290;rank=3 scaffold_1 . CDS 1635047 1635325 . - 0 ID=Physo155290;Parent=Physo155290;rank=2 scaffold_1 . CDS 1635411 1635434 . - 0 ID=Physo155290;Parent=Physo155290;rank=1 scaffold_1 ensembl protein_coding_gene 1636364 1637315 . + . ID=Physo108167;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10032;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1636364 1637315 . + . ID=Physo108167;Parent=Physo108167;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1636364 1637128 . + 0 ID=Physo108167;Parent=Physo108167;rank=1 scaffold_1 . exon 1636364 1637128 . + . ID=Physo108167.1;Parent=Physo108167;constitutive=1;rank=1 scaffold_1 . CDS 1637205 1637315 . + 0 ID=Physo108167;Parent=Physo108167;rank=2 scaffold_1 . exon 1637205 1637315 . + . ID=Physo108167.2;Parent=Physo108167;constitutive=1;rank=2 scaffold_1 ensembl protein_coding_gene 1637514 1638647 . - . ID=Physo108168;biotype=protein_coding;external_name=estExt_fgenesh1_pm.C_10033;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1637514 1638647 . - . ID=Physo108168;Parent=Physo108168;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1637514 1638647 . - 0 ID=Physo108168;Parent=Physo108168;rank=1 scaffold_1 . exon 1637514 1638647 . - . ID=Physo108168.1;Parent=Physo108168;constitutive=1;rank=1 scaffold_1 ensembl protein_coding_gene 1635774 1636305 . + . ID=Physo127418;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10398;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1635774 1636305 . + . ID=Physo127418;Parent=Physo127418;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1635774 1636305 . + . ID=Physo127418.1;Parent=Physo127418;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;rank=1 scaffold_1 . CDS 1635775 1636272 . + 0 ID=Physo127418;Parent=Physo127418;rank=1 scaffold_1 . exon 1628217 1628366 . - . ID=Physo155290.12;Parent=Physo155290;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;rank=12 scaffold_1 . exon 1628499 1628652 . - . ID=Physo155290.11;Parent=Physo155290;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;rank=11 scaffold_1 . exon 1628728 1628936 . - . ID=Physo155290.10;Parent=Physo155290;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;rank=10 scaffold_1 . exon 1629210 1629349 . - . ID=Physo155290.9;Parent=Physo155290;constitutive=1;ensembl_end_phase=2;rank=9 scaffold_1 . exon 1629545 1629813 . - . ID=Physo155290.8;Parent=Physo155290;constitutive=1;ensembl_phase=1;rank=8 scaffold_1 . exon 1629883 1630138 . - . ID=Physo155290.7;Parent=Physo155290;constitutive=1;ensembl_end_phase=1;rank=7 scaffold_1 . exon 1630223 1630342 . - . ID=Physo155290.6;Parent=Physo155290;constitutive=1;rank=6 scaffold_1 . exon 1630373 1630771 . - . ID=Physo155290.5;Parent=Physo155290;constitutive=1;rank=5 scaffold_1 . exon 1631147 1632459 . - . ID=Physo155290.4;Parent=Physo155290;constitutive=1;ensembl_phase=1;rank=4 scaffold_1 . exon 1632508 1634977 . - . ID=Physo155290.3;Parent=Physo155290;constitutive=1;ensembl_end_phase=1;rank=3 scaffold_1 . exon 1635047 1635325 . - . ID=Physo155290.2;Parent=Physo155290;constitutive=1;rank=2 scaffold_1 . exon 1635411 1635434 . - . ID=Physo155290.1;Parent=Physo155290;constitutive=1;rank=1 scaffold_1 . biological_region 1638888 1638892 0.999 + . logic_name=eponine scaffold_1 . biological_region 1639048 1639048 0.999 - . logic_name=eponine scaffold_1 . repeat_region 1639536 1639558 . ? . description=dust scaffold_1 . repeat_region 1639539 1639566 . ? . description=trf scaffold_1 . repeat_region 1643406 1643682 . + . description=GypsyPi-1c_I-int scaffold_1 . biological_region 1644321 1644327 0.999 + . logic_name=eponine scaffold_1 . biological_region 1644379 1644383 0.999 + . logic_name=eponine scaffold_1 . biological_region 1645026 1645027 0.999 + . logic_name=eponine scaffold_1 . repeat_region 1646188 1646248 . ? . description=dust scaffold_1 . repeat_region 1646188 1646248 . ? . description=trf scaffold_1 . biological_region 1647441 1647443 0.999 + . logic_name=eponine scaffold_1 . biological_region 1647461 1647466 0.999 - . logic_name=eponine scaffold_1 . biological_region 1647839 1647842 0.999 - . logic_name=eponine scaffold_1 ensembl protein_coding_gene 1638845 1639532 . + . ID=Physo127421;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10401;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1638845 1639532 . + . ID=Physo127421;Parent=Physo127421;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1638845 1639099 . + 0 ID=Physo127421;Parent=Physo127421;rank=1 scaffold_1 . exon 1638845 1639099 . + . ID=Physo127421.1;Parent=Physo127421;constitutive=1;rank=1 scaffold_1 . CDS 1639196 1639327 . + 0 ID=Physo127421;Parent=Physo127421;rank=2 scaffold_1 . exon 1639196 1639327 . + . ID=Physo127421.2;Parent=Physo127421;constitutive=1;rank=2 scaffold_1 . CDS 1639408 1639530 . + 0 ID=Physo127421;Parent=Physo127421;rank=3 scaffold_1 . exon 1639408 1639532 . + . ID=Physo127421.3;Parent=Physo127421;constitutive=1;ensembl_end_phase=-1;rank=3 scaffold_1 ensembl protein_coding_gene 1644005 1646188 . - . ID=Physo127422;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10402;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1644005 1646188 . - . ID=Physo127422;Parent=Physo127422;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . exon 1644005 1645056 . - . ID=Physo127422.2;Parent=Physo127422;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;rank=2 scaffold_1 . CDS 1644075 1645056 . - 0 ID=Physo127422;Parent=Physo127422;rank=2 scaffold_1 . CDS 1645089 1646188 . - 0 ID=Physo127422;Parent=Physo127422;rank=1 scaffold_1 . exon 1645089 1646188 . - . ID=Physo127422.1;Parent=Physo127422;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 ensembl protein_coding_gene 1648946 1649771 . + . ID=Physo127423;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10403;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1648946 1649771 . + . ID=Physo127423;Parent=Physo127423;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1648946 1649724 . + 0 ID=Physo127423;Parent=Physo127423;rank=1 scaffold_1 . exon 1648946 1649724 . + . ID=Physo127423.1;Parent=Physo127423;constitutive=1;ensembl_end_phase=2;rank=1 scaffold_1 . CDS 1649765 1649771 . + 0 ID=Physo127423;Parent=Physo127423;rank=2 scaffold_1 . exon 1649765 1649771 . + . ID=Physo127423.2;Parent=Physo127423;constitutive=1;ensembl_phase=2;rank=2 scaffold_1 ensembl protein_coding_gene 1650024 1651526 . - . ID=Physo127424;biotype=protein_coding;external_name=estExt_fgenesh1_pg.C_10404;logic_name=jgi_physo1_1 scaffold_1 ensembl transcript 1650024 1651526 . - . ID=Physo127424;Parent=Physo127424;biotype=protein_coding;logic_name=jgi_physo1_1 scaffold_1 . CDS 1650024 1650143 . - 0 ID=Physo127424;Parent=Physo127424;rank=4 scaffold_1 . exon 1650024 1650143 . - . ID=Physo127424.4;Parent=Physo127424;constitutive=1;rank=4 scaffold_1 . CDS 1650283 1650339 . - 0 ID=Physo127424;Parent=Physo127424;rank=3 scaffold_1 . exon 1650283 1650339 . - . ID=Physo127424.3;Parent=Physo127424;constitutive=1;rank=3 scaffold_1 . CDS 1650551 1650847 . - 0 ID=Physo127424;Parent=Physo127424;rank=2 scaffold_1 . exon 1650551 1650847 . - . ID=Physo127424.2;Parent=Physo127424;constitutive=1;rank=2 scaffold_1 . CDS 1651041 1651526 . - 0 ID=Physo127424;Parent=Physo127424;rank=1 scaffold_1 . exon 1651041 1651526 . - . ID=Physo127424.1;Parent=Physo127424;constitutive=1;rank=1 scaffold_1 . repeat_region 1653569 1666419 . ? . description=dust